Prediction of potential genes in microbial genomes Time: Sun Jul 10 16:41:20 2011 Seq name: gi|197325098|gb|DS990368.1| Helicobacter canadensis MIT 98-5491 supercont2.1 genomic scaffold, whole genome shotgun sequence Length of sequence - 889772 bp Number of predicted genes - 874, with homology - 871 Number of transcription units - 281, operones - 180 average op.length - 4.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . - CDS 760 - 1002 357 ## WS1777 hypothetical protein - Prom 1058 - 1117 6.6 + Prom 1022 - 1081 8.0 3 2 Op 1 7/0.000 + CDS 1138 - 2127 1069 ## COG1086 Predicted nucleoside-diphosphate sugar epimerases 4 2 Op 2 . + CDS 2129 - 3289 1234 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 5 2 Op 3 . + CDS 3280 - 3960 830 ## COG1083 CMP-N-acetylneuraminic acid synthetase + Term 3965 - 4006 -0.3 - Term 3713 - 3752 -0.3 6 3 Tu 1 . - CDS 3941 - 5356 1295 ## COG3400 Uncharacterized protein conserved in bacteria - Prom 5402 - 5461 6.0 + Prom 5323 - 5382 6.9 7 4 Op 1 . + CDS 5405 - 6538 1192 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase 8 4 Op 2 . + CDS 6620 - 7288 616 ## COG2703 Hemerythrin 9 4 Op 3 . + CDS 7300 - 9036 1679 ## JJD26997_0059 hypothetical protein - Term 9105 - 9163 -0.1 10 5 Op 1 12/0.000 - CDS 9165 - 10928 1980 ## COG2831 Hemolysin activation/secretion protein 11 5 Op 2 . - CDS 11003 - 14227 3447 ## COG3210 Large exoproteins involved in heme utilization or adhesion 12 6 Tu 1 . - CDS 14772 - 16850 2464 ## COG4771 Outer membrane receptor for ferrienterochelin and colicins - Prom 16914 - 16973 16.4 + Prom 16856 - 16915 15.1 13 7 Op 1 . + CDS 17062 - 17646 285 ## PROTEIN SUPPORTED gi|145634802|ref|ZP_01790510.1| 50S ribosomal protein L14 14 7 Op 2 . + CDS 17656 - 17799 143 ## gi|224417648|ref|ZP_03655654.1| hypothetical protein HcanM9_00075 + Prom 17822 - 17881 2.8 15 8 Op 1 . + CDS 17915 - 18166 299 ## gi|313141195|ref|ZP_07803388.1| predicted protein 16 8 Op 2 . + CDS 18153 - 18584 479 ## gi|313141196|ref|ZP_07803389.1| predicted protein + Term 18797 - 18840 0.1 - TRNA 19109 - 19183 82.8 # Asn GTT 0 0 17 9 Op 1 . - CDS 19266 - 20105 665 ## HH0827 hypothetical protein 18 9 Op 2 3/0.031 - CDS 20114 - 21199 1139 ## COG0860 N-acetylmuramoyl-L-alanine amidase 19 9 Op 3 3/0.031 - CDS 21193 - 22290 1195 ## COG2070 Dioxygenases related to 2-nitropropane dioxygenase 20 9 Op 4 3/0.031 - CDS 22302 - 23516 317 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 21 9 Op 5 1/0.173 - CDS 23526 - 24644 1167 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 22 10 Op 1 18/0.000 - CDS 25013 - 26032 1075 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 23 10 Op 2 3/0.031 - CDS 26070 - 26288 382 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 24 10 Op 3 . - CDS 26302 - 27015 1191 ## COG0528 Uridylate kinase - Prom 27036 - 27095 1.8 25 10 Op 4 . - CDS 27097 - 27528 273 ## gi|224417659|ref|ZP_03655665.1| hypothetical protein HcanM9_00132 - Prom 27576 - 27635 6.9 + Prom 27488 - 27547 5.9 26 11 Op 1 . + CDS 27622 - 29058 425 ## PROTEIN SUPPORTED gi|225093729|ref|YP_002662469.1| ribosomal protein S15 27 11 Op 2 . + CDS 29086 - 29865 1208 ## COG2022 Uncharacterized enzyme of thiazole biosynthesis 28 11 Op 3 . + CDS 29875 - 30486 447 ## HP0951 putative recombination protein RecO 29 11 Op 4 . + CDS 30499 - 30912 457 ## COG3787 Uncharacterized protein conserved in bacteria - TRNA 30914 - 30990 77.5 # Arg GCG 0 0 - TRNA 30997 - 31072 78.8 # Ala GGC 0 0 30 12 Op 1 2/0.102 - CDS 31102 - 31704 444 ## COG0237 Dephospho-CoA kinase 31 12 Op 2 . - CDS 31701 - 32504 683 ## COG0421 Spermidine synthase 32 12 Op 3 . - CDS 32563 - 33012 556 ## gi|224417666|ref|ZP_03655672.1| hypothetical protein HcanM9_00167 33 12 Op 4 . - CDS 33023 - 33871 924 ## COG0760 Parvulin-like peptidyl-prolyl isomerase 34 12 Op 5 . - CDS 33925 - 35229 1093 ## COG2195 Di- and tripeptidases 35 12 Op 6 . - CDS 35239 - 35880 338 ## COG2231 Uncharacterized protein related to Endonuclease III 36 12 Op 7 . - CDS 35864 - 35980 118 ## 37 12 Op 8 31/0.000 - CDS 35991 - 37115 1076 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 38 12 Op 9 . - CDS 37125 - 38666 1602 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 39 12 Op 10 . - CDS 38676 - 38885 173 ## gi|242309391|ref|ZP_04808546.1| predicted protein - Prom 38930 - 38989 8.2 + Prom 38962 - 39021 5.8 40 13 Op 1 3/0.031 + CDS 39044 - 40081 1455 ## COG0468 RecA/RadA recombinase 41 13 Op 2 . + CDS 40092 - 41366 1823 ## COG0148 Enolase 42 13 Op 3 . + CDS 41369 - 41620 284 ## WS1495 hypothetical protein 43 13 Op 4 . + CDS 41617 - 42324 700 ## WS1496 hypothetical protein 44 13 Op 5 . + CDS 42311 - 42811 392 ## COG0703 Shikimate kinase 45 13 Op 6 . + CDS 42857 - 43873 828 ## COG0859 ADP-heptose:LPS heptosyltransferase 46 13 Op 7 . + CDS 43916 - 44776 995 ## COG2107 Predicted periplasmic solute-binding protein - Term 44533 - 44574 1.7 47 14 Op 1 . - CDS 44770 - 45585 839 ## COG0810 Periplasmic protein TonB, links inner and outer membranes 48 14 Op 2 . - CDS 45586 - 46026 165 ## gi|224417682|ref|ZP_03655688.1| hypothetical protein HcanM9_00247 49 14 Op 3 . - CDS 46023 - 46382 608 ## COG1886 Flagellar motor switch/type III secretory pathway protein 50 14 Op 4 . - CDS 46401 - 46817 551 ## WS1059 hypothetical protein - Prom 46837 - 46896 9.3 51 15 Op 1 . - CDS 46898 - 47674 708 ## COG0642 Signal transduction histidine kinase 52 15 Op 2 . - CDS 47723 - 48211 347 ## gi|253827035|ref|ZP_04869920.1| sensor histidine kinase 53 15 Op 3 . - CDS 48208 - 48876 710 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 54 15 Op 4 . - CDS 48916 - 49362 536 ## WS0076 hypothetical protein 55 15 Op 5 17/0.000 - CDS 49425 - 50708 1194 ## COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 56 15 Op 6 3/0.031 - CDS 50705 - 51427 268 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 57 15 Op 7 2/0.102 - CDS 51420 - 51827 417 ## COG0802 Predicted ATPase or kinase 58 15 Op 8 . - CDS 51828 - 53588 1697 ## COG2812 DNA polymerase III, gamma/tau subunits 59 15 Op 9 40/0.000 - CDS 53652 - 54323 945 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 60 15 Op 10 1/0.173 - CDS 54332 - 55936 1248 ## COG0642 Signal transduction histidine kinase - Prom 55966 - 56025 4.5 61 16 Op 1 3/0.031 - CDS 56031 - 57800 1883 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 62 16 Op 2 16/0.000 - CDS 57800 - 58117 474 ## COG1677 Flagellar hook-basal body protein 63 16 Op 3 24/0.000 - CDS 58128 - 58628 441 ## COG1558 Flagellar basal body rod protein 64 16 Op 4 . - CDS 58640 - 59074 641 ## COG1815 Flagellar basal body protein - Prom 59127 - 59186 4.6 65 17 Op 1 8/0.000 - CDS 59342 - 60133 1183 ## COG4786 Flagellar basal body rod protein 66 17 Op 2 . - CDS 60145 - 60978 1096 ## COG4786 Flagellar basal body rod protein 67 17 Op 3 . - CDS 61056 - 61439 595 ## WS0215 hypothetical protein 68 17 Op 4 . - CDS 61453 - 62526 1011 ## WS0216 hypothetical protein - Prom 62674 - 62733 80.4 69 18 Op 1 . - CDS 62769 - 64604 1736 ## COG0143 Methionyl-tRNA synthetase 70 18 Op 2 . - CDS 64582 - 64758 160 ## NIS_0795 hypothetical protein - Prom 64831 - 64890 80.3 71 19 Tu 1 . - CDS 64952 - 65812 922 ## COG0158 Fructose-1,6-bisphosphatase - Prom 65874 - 65933 6.6 + Prom 65863 - 65922 5.7 72 20 Tu 1 . + CDS 65942 - 66577 817 ## COG0036 Pentose-5-phosphate-3-epimerase - Term 66567 - 66593 0.3 73 21 Op 1 22/0.000 - CDS 66607 - 67419 1030 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 74 21 Op 2 32/0.000 - CDS 67446 - 68096 775 ## COG2011 ABC-type metal ion transport system, permease component 75 21 Op 3 . - CDS 68102 - 69061 1111 ## COG1135 ABC-type metal ion transport system, ATPase component 76 21 Op 4 . - CDS 69115 - 69717 780 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 77 21 Op 5 . - CDS 69719 - 70111 452 ## COG0739 Membrane proteins related to metalloendopeptidases 78 21 Op 6 . - CDS 70176 - 70520 332 ## gi|224417713|ref|ZP_03655719.1| hypothetical protein HcanM9_00406 - Prom 70717 - 70776 9.6 + Prom 70745 - 70804 10.7 79 22 Op 1 29/0.000 + CDS 70917 - 71459 653 ## COG0576 Molecular chaperone GrpE (heat shock protein) 80 22 Op 2 . + CDS 71482 - 73359 2827 ## COG0443 Molecular chaperone + Term 73385 - 73422 2.6 + Prom 73493 - 73552 4.8 81 23 Op 1 13/0.000 + CDS 73627 - 74856 1250 ## COG1538 Outer membrane protein 82 23 Op 2 27/0.000 + CDS 74853 - 75590 725 ## COG0845 Membrane-fusion protein 83 23 Op 3 . + CDS 75590 - 78643 3231 ## COG0841 Cation/multidrug efflux pump 84 23 Op 4 . + CDS 78713 - 78937 458 ## gi|224417720|ref|ZP_03655726.1| hypothetical protein HcanM9_00441 + Prom 78939 - 78998 7.5 85 24 Op 1 1/0.173 + CDS 79021 - 80877 2440 ## COG1166 Arginine decarboxylase (spermidine biosynthesis) 86 24 Op 2 . + CDS 80874 - 81575 825 ## COG1045 Serine acetyltransferase - Term 81474 - 81515 4.8 87 25 Op 1 3/0.031 - CDS 81581 - 82048 493 ## COG0666 FOG: Ankyrin repeat - Prom 82069 - 82128 2.2 88 25 Op 2 . - CDS 82135 - 83559 1283 ## COG0753 Catalase - Prom 83594 - 83653 7.7 + Prom 83567 - 83626 10.8 89 26 Op 1 . + CDS 83785 - 84369 714 ## COG2703 Hemerythrin 90 26 Op 2 2/0.102 + CDS 84379 - 86298 2317 ## COG0021 Transketolase 91 26 Op 3 . + CDS 86301 - 88532 1883 ## COG3893 Inactivated superfamily I helicase + Term 88635 - 88667 -1.0 92 27 Tu 1 . - CDS 88507 - 89004 524 ## HH1706 hypothetical protein - Prom 89041 - 89100 10.6 + Prom 89020 - 89079 9.7 93 28 Tu 1 . + CDS 89197 - 89364 200 ## gi|315452741|ref|YP_004073011.1| hypothetical protein HFELIS_03370 - TRNA 89207 - 89283 95.1 # Asp GTC 0 0 - TRNA 89295 - 89370 95.5 # Val TAC 0 0 - TRNA 89402 - 89476 63.3 # Glu TTC 0 0 - TRNA 89489 - 89564 86.5 # Lys TTT 0 0 - Term 89391 - 89438 1.3 94 29 Tu 1 . - CDS 89601 - 90635 256 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase - Prom 90764 - 90823 7.1 + Prom 90605 - 90664 8.8 95 30 Tu 1 . + CDS 90719 - 91591 1085 ## COG2326 Uncharacterized conserved protein + Term 91624 - 91676 9.6 + Prom 91701 - 91760 10.9 96 31 Tu 1 . + CDS 91870 - 93990 2925 ## COG0840 Methyl-accepting chemotaxis protein + Prom 93992 - 94051 7.5 97 32 Op 1 . + CDS 94098 - 95018 214 ## PROTEIN SUPPORTED gi|163756109|ref|ZP_02163225.1| 30S ribosomal protein S1 98 32 Op 2 . + CDS 95023 - 96417 1542 ## WS0208 hypothetical protein + Term 96614 - 96662 -0.9 99 33 Op 1 3/0.031 - CDS 96400 - 96801 435 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 100 33 Op 2 . - CDS 96801 - 97562 727 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 101 33 Op 3 . - CDS 97565 - 99694 2287 ## WS1882 hypothetical protein 102 33 Op 4 . - CDS 99746 - 100849 1489 ## COG2861 Uncharacterized protein conserved in bacteria 103 33 Op 5 22/0.000 - CDS 100856 - 101092 420 ## COG0851 Septum formation topological specificity factor 104 33 Op 6 . - CDS 101089 - 101745 886 ## COG2894 Septum formation inhibitor-activating ATPase - Prom 101836 - 101895 80.4 - Term 102067 - 102118 -0.9 105 34 Op 1 . - CDS 102139 - 102753 430 ## COG0164 Ribonuclease HII 106 34 Op 2 3/0.031 - CDS 102740 - 105157 2957 ## COG0466 ATP-dependent Lon protease, bacterial type 107 34 Op 3 . - CDS 105167 - 105604 590 ## COG4105 DNA uptake lipoprotein - Prom 105669 - 105728 39.1 + Prom 105982 - 106041 13.4 108 35 Op 1 1/0.173 + CDS 106142 - 106579 521 ## COG1699 Uncharacterized protein conserved in bacteria 109 35 Op 2 . + CDS 106576 - 107316 876 ## COG0345 Pyrroline-5-carboxylate reductase 110 35 Op 3 . + CDS 107313 - 108209 748 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase + Term 108255 - 108308 4.1 + Prom 108221 - 108280 8.3 111 36 Op 1 7/0.000 + CDS 108331 - 109686 1346 ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] 112 36 Op 2 . + CDS 109676 - 111493 1848 ## COG3276 Selenocysteine-specific translation elongation factor 113 36 Op 3 . + CDS 111487 - 112482 1045 ## WS0836 NifS protein 114 36 Op 4 . + CDS 112485 - 113711 1420 ## COG0303 Molybdopterin biosynthesis enzyme + Term 113792 - 113838 7.2 115 37 Op 1 1/0.173 - CDS 113708 - 114391 722 ## COG0284 Orotidine-5'-phosphate decarboxylase 116 37 Op 2 17/0.000 - CDS 114388 - 114942 607 ## COG0781 Transcription termination factor 117 37 Op 3 3/0.031 - CDS 114943 - 115413 681 ## COG0054 Riboflavin synthase beta-chain 118 37 Op 4 2/0.102 - CDS 115413 - 116219 931 ## COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase 119 37 Op 5 . - CDS 116222 - 116857 640 ## COG0288 Carbonic anhydrase 120 37 Op 6 . - CDS 116867 - 117637 855 ## COG1360 Flagellar motor protein - Prom 117670 - 117729 10.0 + Prom 117650 - 117709 15.5 121 38 Tu 1 . + CDS 117735 - 118328 574 ## PROTEIN SUPPORTED gi|154175107|ref|YP_001408238.1| ribosomal protein L22 122 39 Tu 1 . - CDS 118348 - 120096 1855 ## COG1283 Na+/phosphate symporter - Prom 120183 - 120242 10.4 + Prom 120139 - 120198 9.4 123 40 Tu 1 . + CDS 120268 - 121482 1481 ## COG1252 NADH dehydrogenase, FAD-containing subunit + Term 121572 - 121606 -0.1 124 41 Op 1 3/0.031 - CDS 121655 - 122476 677 ## COG0812 UDP-N-acetylmuramate dehydrogenase 125 41 Op 2 . - CDS 122476 - 122727 310 ## COG1987 Flagellar biosynthesis pathway, component FliQ 126 41 Op 3 3/0.031 - CDS 122758 - 123579 1249 ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) 127 41 Op 4 . - CDS 123589 - 124293 722 ## COG0149 Triosephosphate isomerase - Prom 124446 - 124505 8.2 + Prom 124262 - 124321 9.9 128 42 Tu 1 . + CDS 124448 - 125530 1210 ## COG1289 Predicted membrane protein 129 43 Tu 1 . - CDS 126780 - 128123 1556 ## ICDCCJ_1296 vacuolating cytotoxin precursor, putative - Prom 128149 - 128208 7.6 130 44 Tu 1 . - CDS 128327 - 128890 602 ## COG0717 Deoxycytidine deaminase - Prom 128996 - 129055 8.5 + Prom 128883 - 128942 6.3 131 45 Op 1 27/0.000 + CDS 128999 - 129472 518 ## COG0511 Biotin carboxyl carrier protein 132 45 Op 2 . + CDS 129472 - 130839 1381 ## COG0439 Biotin carboxylase 133 45 Op 3 . + CDS 130888 - 131640 1077 ## COG1344 Flagellin and related hook-associated proteins + Term 131686 - 131723 3.3 134 46 Op 1 . - CDS 132040 - 132225 196 ## gi|224417771|ref|ZP_03655777.1| hypothetical protein HcanM9_00704 135 46 Op 2 . - CDS 132225 - 133415 1699 ## COG4992 Ornithine/acetylornithine aminotransferase - Prom 133437 - 133496 11.1 + Prom 133453 - 133512 11.9 136 47 Tu 1 . + CDS 133613 - 136219 2191 ## COG2352 Phosphoenolpyruvate carboxylase + Term 136229 - 136270 6.1 - Term 136214 - 136258 8.3 137 48 Op 1 . - CDS 136263 - 137177 675 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit 138 48 Op 2 . - CDS 137126 - 137389 106 ## gi|224417775|ref|ZP_03655781.1| hypothetical protein HcanM9_00724 139 48 Op 3 . - CDS 137382 - 137759 285 ## COG1359 Uncharacterized conserved protein 140 48 Op 4 . - CDS 137767 - 138960 982 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Prom 139085 - 139144 9.8 141 49 Op 1 . - CDS 139216 - 139650 649 ## COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain - Prom 139742 - 139801 7.7 142 49 Op 2 . - CDS 139815 - 141044 1279 ## COG0477 Permeases of the major facilitator superfamily - Prom 141232 - 141291 17.0 143 50 Tu 1 . + CDS 141260 - 142612 1450 ## COG1322 Uncharacterized protein conserved in bacteria 144 51 Op 1 1/0.173 - CDS 142593 - 143363 797 ## COG1684 Flagellar biosynthesis pathway, component FliR 145 51 Op 2 1/0.173 - CDS 143371 - 144012 241 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 146 51 Op 3 38/0.000 - CDS 144022 - 145089 427 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts 147 51 Op 4 . - CDS 145093 - 145893 1363 ## PROTEIN SUPPORTED gi|224417784|ref|ZP_03655790.1| 30S ribosomal protein S2 - Prom 146011 - 146070 9.1 - Term 146079 - 146114 4.4 148 52 Op 1 2/0.102 - CDS 146120 - 146986 1006 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component 149 52 Op 2 . - CDS 146990 - 148123 1236 ## COG1960 Acyl-CoA dehydrogenases 150 52 Op 3 . - CDS 148138 - 149325 1154 ## HH1512 hypothetical protein - Prom 149347 - 149406 2.5 151 52 Op 4 . - CDS 149454 - 150299 794 ## COG0414 Panthothenate synthetase - Prom 150433 - 150492 12.3 + Prom 150428 - 150487 9.1 152 53 Op 1 . + CDS 150567 - 151589 780 ## Pat9b_2519 type VI secretion-associated protein 153 53 Op 2 6/0.000 + CDS 151617 - 152120 465 ## COG3516 Uncharacterized protein conserved in bacteria 154 53 Op 3 4/0.000 + CDS 152123 - 153607 1444 ## COG3517 Uncharacterized protein conserved in bacteria 155 53 Op 4 . + CDS 153626 - 154120 702 ## COG3157 Hemolysin-coregulated protein (uncharacterized) 156 53 Op 5 . + CDS 154148 - 154624 426 ## gi|313141336|ref|ZP_07803529.1| predicted protein 157 53 Op 6 9/0.000 + CDS 154634 - 156448 1056 ## COG3519 Uncharacterized protein conserved in bacteria 158 53 Op 7 . + CDS 156427 - 157032 299 ## COG3520 Uncharacterized protein conserved in bacteria 159 53 Op 8 . + CDS 156995 - 157465 524 ## gi|253827137|ref|ZP_04870022.1| conserved hypothetical protein 160 53 Op 9 . + CDS 157462 - 160092 1194 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 161 53 Op 10 . + CDS 160095 - 160385 427 ## gi|224417798|ref|ZP_03655804.1| hypothetical protein HcanM9_00839 162 53 Op 11 . + CDS 160394 - 163276 2738 ## gi|224417799|ref|ZP_03655805.1| hypothetical protein HcanM9_00844 163 53 Op 12 . + CDS 163304 - 163690 295 ## gi|224417800|ref|ZP_03655806.1| hypothetical protein HcanM9_00849 164 53 Op 13 . + CDS 163699 - 164847 824 ## gi|224417801|ref|ZP_03655807.1| hypothetical protein HcanM9_00854 165 53 Op 14 . + CDS 164840 - 165337 398 ## gi|313141344|ref|ZP_07803537.1| predicted protein 166 53 Op 15 . + CDS 165359 - 166717 1164 ## COG3522 Uncharacterized protein conserved in bacteria 167 53 Op 16 . + CDS 166718 - 167446 686 ## gi|224417804|ref|ZP_03655810.1| hypothetical protein HcanM9_00869 168 53 Op 17 . + CDS 167451 - 171677 2382 ## COG3523 Uncharacterized protein conserved in bacteria 169 53 Op 18 . + CDS 171690 - 172736 767 ## COG0687 Spermidine/putrescine-binding periplasmic protein + Prom 172818 - 172877 7.8 170 54 Tu 1 . + CDS 172904 - 176158 2989 ## Spro_3913 outer membrane autotransporter + Term 176171 - 176215 3.1 + Prom 176707 - 176766 5.4 171 55 Tu 1 . + CDS 176815 - 177015 62 ## + Term 177222 - 177254 -0.8 - TRNA 176816 - 176892 91.6 # Arg TCT 0 0 - TRNA 176896 - 176973 80.6 # Met CAT 0 0 172 56 Tu 1 . - CDS 177165 - 177773 675 ## gi|224417808|ref|ZP_03655814.1| hypothetical protein HcanM9_00889 - Prom 177804 - 177863 5.8 + Prom 177739 - 177798 9.8 173 57 Op 1 . + CDS 177972 - 179084 465 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 174 57 Op 2 3/0.031 + CDS 179160 - 180629 1665 ## COG0760 Parvulin-like peptidyl-prolyl isomerase 175 57 Op 3 . + CDS 180638 - 181297 876 ## COG0849 Actin-like ATPase involved in cell division + Prom 181299 - 181358 80.3 176 58 Op 1 35/0.000 + CDS 181548 - 182315 933 ## COG0849 Actin-like ATPase involved in cell division 177 58 Op 2 . + CDS 182338 - 183498 1742 ## COG0206 Cell division GTPase - Term 183284 - 183322 -0.3 178 59 Op 1 . - CDS 183518 - 185308 1918 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains - Prom 185331 - 185390 6.3 179 59 Op 2 23/0.000 - CDS 185400 - 186344 1064 ## COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit 180 59 Op 3 14/0.000 - CDS 186355 - 187572 1633 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit 181 59 Op 4 14/0.000 - CDS 187575 - 187973 575 ## COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit 182 59 Op 5 1/0.173 - CDS 187984 - 188544 773 ## COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit - Prom 188568 - 188627 6.5 - Term 188663 - 188694 -0.2 183 60 Tu 1 . - CDS 188704 - 189351 674 ## COG0546 Predicted phosphatases - Prom 189388 - 189447 6.9 + Prom 189318 - 189377 8.2 184 61 Op 1 . + CDS 189470 - 190213 514 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 185 61 Op 2 . + CDS 190229 - 191440 1438 ## COG0019 Diaminopimelate decarboxylase + Term 191559 - 191596 1.2 + Prom 191475 - 191534 12.0 186 62 Op 1 27/0.000 + CDS 191612 - 192724 1071 ## COG0845 Membrane-fusion protein 187 62 Op 2 9/0.000 + CDS 192738 - 195863 3561 ## COG0841 Cation/multidrug efflux pump 188 62 Op 3 . + CDS 195856 - 197256 695 ## PROTEIN SUPPORTED gi|157165073|ref|YP_001466086.1| 30S ribosomal protein S12 + Term 197339 - 197385 -0.9 189 63 Op 1 . - CDS 197282 - 198004 805 ## WS1329 putative periplasmic protein - Term 198039 - 198068 -0.2 190 63 Op 2 46/0.000 - CDS 198076 - 198429 592 ## PROTEIN SUPPORTED gi|224417826|ref|ZP_03655832.1| 50S ribosomal protein L20 191 63 Op 3 36/0.000 - CDS 198522 - 198716 325 ## PROTEIN SUPPORTED gi|224417827|ref|ZP_03655833.1| 50S ribosomal protein L35 192 63 Op 4 16/0.000 - CDS 198742 - 199257 339 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 193 63 Op 5 . - CDS 199254 - 201071 2517 ## COG0441 Threonyl-tRNA synthetase - Prom 201096 - 201155 9.8 194 64 Op 1 2/0.102 - CDS 201176 - 203968 2613 ## COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component 195 64 Op 2 2/0.102 - CDS 204032 - 204628 723 ## COG2143 Thioredoxin-related protein - Prom 204658 - 204717 2.5 196 65 Op 1 . - CDS 204728 - 205693 917 ## COG0276 Protoheme ferro-lyase (ferrochelatase) 197 65 Op 2 . - CDS 205693 - 207000 1271 ## WS0783 putative periplasmic protein 198 65 Op 3 . - CDS 207017 - 208024 1007 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase - Prom 208051 - 208110 10.3 + Prom 208065 - 208124 14.8 199 66 Op 1 . + CDS 208153 - 208860 963 ## COG0670 Integral membrane protein, interacts with FtsH 200 66 Op 2 . + CDS 208866 - 209276 306 ## COG0352 Thiamine monophosphate synthase - Term 209186 - 209229 -0.8 201 67 Tu 1 . - CDS 209266 - 210162 905 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 210206 - 210265 4.9 + Prom 210130 - 210189 8.5 202 68 Tu 1 . + CDS 210271 - 211671 1792 ## COG1160 Predicted GTPases + Term 211722 - 211763 6.0 + Prom 211855 - 211914 11.4 203 69 Op 1 11/0.000 + CDS 212067 - 215072 1865 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 204 69 Op 2 . + CDS 215065 - 216312 484 ## COG0732 Restriction endonuclease S subunits 205 69 Op 3 . + CDS 216309 - 217616 743 ## Dtox_2620 hypothetical protein 206 69 Op 4 . + CDS 217616 - 219406 1274 ## COG0286 Type I restriction-modification system methyltransferase subunit + Term 219415 - 219469 4.9 + Prom 219768 - 219827 1.6 207 70 Tu 1 . + CDS 219859 - 220335 416 ## gi|253827183|ref|ZP_04870068.1| hypothetical protein HCAN_0531 + Prom 220467 - 220526 4.7 208 71 Tu 1 . + CDS 220586 - 220879 314 ## gi|224417844|ref|ZP_03655850.1| hypothetical protein HcanM9_01073 - TRNA 221188 - 221263 86.9 # Val GAC 0 0 - Term 221177 - 221221 2.5 209 72 Op 1 3/0.031 - CDS 221320 - 221766 274 ## COG0597 Lipoprotein signal peptidase 210 72 Op 2 . - CDS 221766 - 223103 1967 ## COG1109 Phosphomannomutase - Prom 223157 - 223216 8.2 + Prom 223117 - 223176 10.4 211 73 Op 1 3/0.031 + CDS 223211 - 223486 443 ## PROTEIN SUPPORTED gi|224417847|ref|ZP_03655853.1| 30S ribosomal protein S20 212 73 Op 2 . + CDS 223513 - 224583 1538 ## COG0216 Protein chain release factor A + Term 224676 - 224742 30.0 + TRNA 224642 - 224732 66.4 # Ser GCT 0 0 + Prom 224659 - 224718 80.4 213 74 Op 1 1/0.173 + CDS 224964 - 225395 486 ## COG1832 Predicted CoA-binding protein 214 74 Op 2 . + CDS 225392 - 226600 1467 ## COG1171 Threonine dehydratase 215 74 Op 3 . + CDS 226608 - 227786 681 ## WS0133 putative integral membrane protein 216 74 Op 4 . + CDS 227752 - 228450 339 ## WS0134 hypothetical protein + Prom 228800 - 228859 4.1 217 75 Op 1 3/0.031 + CDS 228913 - 229299 413 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 218 75 Op 2 . + CDS 229313 - 231292 2554 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 219 75 Op 3 . + CDS 231334 - 232074 811 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance 220 75 Op 4 . + CDS 232078 - 234768 3128 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains 221 76 Op 1 . - CDS 234777 - 235319 514 ## WS0571 hypothetical protein 222 76 Op 2 11/0.000 - CDS 235316 - 236869 725 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 223 76 Op 3 11/0.000 - CDS 236850 - 237875 1139 ## COG4239 ABC-type uncharacterized transport system, permease component 224 76 Op 4 11/0.000 - CDS 237877 - 238914 769 ## COG4174 ABC-type uncharacterized transport system, permease component 225 76 Op 5 . - CDS 238925 - 240736 1738 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 240815 - 240874 8.2 + Prom 240774 - 240833 12.0 226 77 Tu 1 . + CDS 240863 - 241411 676 ## JJD26997_0342 hypothetical protein + Term 241412 - 241457 6.5 227 78 Tu 1 . - CDS 241451 - 242569 1505 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain - Prom 242700 - 242759 7.1 + Prom 242586 - 242645 6.7 228 79 Op 1 . + CDS 242753 - 243325 573 ## COG0353 Recombinational DNA repair protein (RecF pathway) 229 79 Op 2 . + CDS 243337 - 244536 1613 ## COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain + Term 244555 - 244598 1.1 + Prom 244540 - 244599 2.6 230 80 Op 1 . + CDS 244619 - 245260 813 ## gi|224417866|ref|ZP_03655872.1| possible outer membrane protein 231 80 Op 2 . + CDS 245270 - 246043 378 ## WS0258 hypothetical protein 232 81 Op 1 . - CDS 246040 - 247869 2208 ## COG1256 Flagellar hook-associated protein 233 81 Op 2 . - CDS 247880 - 248335 670 ## WS0260 hypothetical protein 234 81 Op 3 . - CDS 248365 - 248604 346 ## gi|224417870|ref|ZP_03655876.1| hypothetical protein HcanM9_01203 235 81 Op 4 . - CDS 248664 - 248858 359 ## WS0262 hypothetical protein - Prom 248955 - 249014 6.3 + Prom 248760 - 248819 6.3 236 82 Op 1 2/0.102 + CDS 249004 - 250233 1326 ## COG0739 Membrane proteins related to metalloendopeptidases 237 82 Op 2 . + CDS 250208 - 250822 650 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 238 82 Op 3 . + CDS 250812 - 251429 631 ## gi|224417874|ref|ZP_03655880.1| hypothetical protein HcanM9_01223 239 82 Op 4 3/0.031 + CDS 251451 - 252578 666 ## COG0763 Lipid A disaccharide synthetase 240 82 Op 5 2/0.102 + CDS 252650 - 253120 628 ## COG0782 Transcription elongation factor 241 82 Op 6 . + CDS 253131 - 253565 549 ## COG0756 dUTPase 242 82 Op 7 . + CDS 253581 - 254126 534 ## WS0801 hypothetical protein + Term 254210 - 254277 31.8 + Prom 254128 - 254187 80.3 243 83 Op 1 . + CDS 254289 - 255302 1276 ## WS0802 hypothetical protein 244 83 Op 2 . + CDS 255304 - 255942 671 ## COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor 245 83 Op 3 . + CDS 255939 - 256556 710 ## COG0040 ATP phosphoribosyltransferase 246 83 Op 4 . + CDS 256559 - 257824 1769 ## COG0065 3-isopropylmalate dehydratase large subunit + Term 257900 - 257946 1.1 247 84 Tu 1 . - CDS 257857 - 258915 1050 ## COG1373 Predicted ATPase (AAA+ superfamily) - Prom 258941 - 259000 8.9 + Prom 258937 - 258996 8.7 248 85 Op 1 40/0.000 + CDS 259089 - 259400 516 ## PROTEIN SUPPORTED gi|224417884|ref|ZP_03655890.1| 30S ribosomal protein S10 249 85 Op 2 58/0.000 + CDS 259410 - 259988 995 ## PROTEIN SUPPORTED gi|224417885|ref|ZP_03655891.1| 50S ribosomal protein L3 250 85 Op 3 61/0.000 + CDS 259985 - 260599 1033 ## PROTEIN SUPPORTED gi|224417886|ref|ZP_03655892.1| 50S ribosomal protein L4 251 85 Op 4 61/0.000 + CDS 260602 - 260883 454 ## PROTEIN SUPPORTED gi|224417887|ref|ZP_03655893.1| 50S ribosomal protein L23 252 85 Op 5 60/0.000 + CDS 260894 - 261721 1433 ## PROTEIN SUPPORTED gi|224417888|ref|ZP_03655894.1| 50S ribosomal protein L2 253 85 Op 6 59/0.000 + CDS 261731 - 262012 491 ## PROTEIN SUPPORTED gi|224417889|ref|ZP_03655895.1| 30S ribosomal protein S19 254 85 Op 7 61/0.000 + CDS 262023 - 262352 532 ## PROTEIN SUPPORTED gi|224417890|ref|ZP_03655896.1| 50S ribosomal protein L22 255 85 Op 8 50/0.000 + CDS 262352 - 263059 1188 ## PROTEIN SUPPORTED gi|224417891|ref|ZP_03655897.1| 30S ribosomal protein S3 256 85 Op 9 . + CDS 263062 - 263487 720 ## PROTEIN SUPPORTED gi|224417892|ref|ZP_03655898.1| 50S ribosomal protein L16 257 85 Op 10 . + CDS 263474 - 263668 308 ## PROTEIN SUPPORTED gi|224417893|ref|ZP_03655899.1| 50S ribosomal protein L29 258 85 Op 11 50/0.000 + CDS 263668 - 263934 440 ## PROTEIN SUPPORTED gi|224417894|ref|ZP_03655900.1| 30S ribosomal protein S17 259 85 Op 12 57/0.000 + CDS 263931 - 264299 601 ## PROTEIN SUPPORTED gi|224417895|ref|ZP_03655901.1| 50S ribosomal protein L14 260 85 Op 13 48/0.000 + CDS 264299 - 264529 385 ## PROTEIN SUPPORTED gi|224417896|ref|ZP_03655902.1| 50S ribosomal protein L24 261 85 Op 14 50/0.000 + CDS 264533 - 265087 928 ## PROTEIN SUPPORTED gi|224417897|ref|ZP_03655903.1| 50S ribosomal protein L5 262 85 Op 15 50/0.000 + CDS 265080 - 265265 331 ## PROTEIN SUPPORTED gi|224417898|ref|ZP_03655904.1| 30S ribosomal protein S14 263 85 Op 16 55/0.000 + CDS 265275 - 265670 659 ## PROTEIN SUPPORTED gi|224417899|ref|ZP_03655905.1| 30S ribosomal protein S8 264 85 Op 17 46/0.000 + CDS 265680 - 266216 897 ## PROTEIN SUPPORTED gi|224417900|ref|ZP_03655906.1| 50S ribosomal protein L6 265 85 Op 18 56/0.000 + CDS 266227 - 266583 582 ## PROTEIN SUPPORTED gi|224417901|ref|ZP_03655907.1| 50S ribosomal protein L18 266 85 Op 19 10/0.000 + CDS 266592 - 267032 721 ## PROTEIN SUPPORTED gi|224417902|ref|ZP_03655908.1| 30S ribosomal protein S5 267 85 Op 20 53/0.000 + CDS 267042 - 267443 661 ## PROTEIN SUPPORTED gi|224417903|ref|ZP_03655909.1| 50S ribosomal protein L15 268 85 Op 21 2/0.102 + CDS 267443 - 268702 920 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 269 85 Op 22 9/0.000 + CDS 268703 - 269461 888 ## COG0024 Methionine aminopeptidase 270 85 Op 23 . + CDS 269471 - 269689 242 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 + Prom 269794 - 269853 6.0 271 86 Op 1 . + CDS 269926 - 270039 199 ## PROTEIN SUPPORTED gi|224417907|ref|ZP_03655913.1| 50S ribosomal protein L36 272 86 Op 2 48/0.000 + CDS 270052 - 270420 613 ## PROTEIN SUPPORTED gi|224417908|ref|ZP_03655914.1| 30S ribosomal protein S13 273 86 Op 3 36/0.000 + CDS 270431 - 270823 670 ## PROTEIN SUPPORTED gi|224417909|ref|ZP_03655915.1| 30S ribosomal protein S11 274 86 Op 4 26/0.000 + CDS 270833 - 271459 1054 ## PROTEIN SUPPORTED gi|224417910|ref|ZP_03655916.1| 30S ribosomal protein S4 275 86 Op 5 50/0.000 + CDS 271477 - 272466 1310 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 276 86 Op 6 . + CDS 272484 - 272834 583 ## PROTEIN SUPPORTED gi|224417912|ref|ZP_03655918.1| 50S ribosomal protein L17 + Term 272838 - 272882 6.8 + Prom 272843 - 272902 10.7 277 87 Op 1 28/0.000 + CDS 273018 - 273521 808 ## COG0723 Rieske Fe-S protein 278 87 Op 2 16/0.000 + CDS 273531 - 274760 1345 ## COG1290 Cytochrome b subunit of the bc complex 279 87 Op 3 . + CDS 274770 - 275612 1051 ## COG2857 Cytochrome c1 + Term 275624 - 275665 4.0 280 88 Tu 1 . - CDS 275636 - 277948 2105 ## COG0068 Hydrogenase maturation factor - Prom 277986 - 278045 2.7 + Prom 277931 - 277990 6.1 281 89 Op 1 . + CDS 278035 - 278652 683 ## COG0352 Thiamine monophosphate synthase 282 89 Op 2 . + CDS 278696 - 278992 361 ## COG2350 Uncharacterized protein conserved in bacteria + Term 279114 - 279160 -0.9 283 90 Tu 1 . - CDS 278989 - 279288 283 ## gi|224417919|ref|ZP_03655925.1| hypothetical protein HcanM9_01452 - Prom 279355 - 279414 11.5 + Prom 279312 - 279371 7.3 284 91 Op 1 28/0.000 + CDS 279409 - 279852 568 ## COG1826 Sec-independent protein secretion pathway components 285 91 Op 2 3/0.031 + CDS 279879 - 280613 779 ## COG0805 Sec-independent protein secretion pathway component TatC 286 91 Op 3 2/0.102 + CDS 280606 - 281646 1306 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) 287 91 Op 4 . + CDS 281643 - 282215 430 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 288 91 Op 5 . + CDS 282209 - 282427 288 ## gi|224417924|ref|ZP_03655930.1| hypothetical protein HcanM9_01477 289 91 Op 6 . + CDS 282428 - 282796 437 ## Nitsa_1915 hypothetical protein 290 91 Op 7 . + CDS 282784 - 283434 596 ## WS1181 hypothetical protein 291 91 Op 8 . + CDS 283431 - 284798 1262 ## WS1180 hypothetical protein 292 92 Tu 1 . - CDS 284810 - 285190 595 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - Prom 285215 - 285274 8.4 + Prom 285231 - 285290 8.3 293 93 Op 1 40/0.000 + CDS 285328 - 286323 724 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit 294 93 Op 2 3/0.031 + CDS 286320 - 288695 2223 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 295 93 Op 3 3/0.031 + CDS 288692 - 290002 1414 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase 296 93 Op 4 4/0.000 + CDS 289993 - 290817 555 ## PROTEIN SUPPORTED gi|227423810|ref|ZP_03906912.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SSU ribosomal protein S1P 297 93 Op 5 . + CDS 290886 - 292238 2279 ## PROTEIN SUPPORTED gi|224417933|ref|ZP_03655939.1| 30S ribosomal protein S1 + Term 292240 - 292290 8.1 298 94 Op 1 . + CDS 292297 - 292587 272 ## PROTEIN SUPPORTED gi|152992146|ref|YP_001357867.1| 30S ribosomal protein S1 299 94 Op 2 . + CDS 292599 - 293087 557 ## WS1312 hypothetical protein 300 94 Op 3 . + CDS 293100 - 294683 1711 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Term 294684 - 294724 -1.0 + TRNA 294755 - 294841 75.0 # Leu CAA 0 0 301 95 Tu 1 . + CDS 295116 - 297230 2653 ## COG1966 Carbon starvation protein, predicted membrane protein 302 96 Tu 1 . - CDS 297489 - 297746 194 ## CFF8240_0305 XRE family transcriptional regulator - Prom 297797 - 297856 9.3 + Prom 297747 - 297806 15.9 303 97 Tu 1 . + CDS 297864 - 298079 169 ## gi|224417939|ref|ZP_03655945.1| hypothetical protein HcanM9_01552 + Term 298084 - 298117 2.2 304 98 Op 1 4/0.000 - CDS 298107 - 300035 1802 ## COG2604 Uncharacterized protein conserved in bacteria 305 98 Op 2 . - CDS 300090 - 301640 2160 ## COG1344 Flagellin and related hook-associated proteins - Prom 301812 - 301871 80.3 + Prom 301781 - 301840 80.3 306 99 Op 1 . + CDS 301872 - 304205 1871 ## WS2197 hypothetical protein 307 99 Op 2 . + CDS 304192 - 305130 589 ## CFF8240_1585 radical SAM domain-containing protein 308 99 Op 3 5/0.000 + CDS 305127 - 306221 758 ## COG0535 Predicted Fe-S oxidoreductases 309 99 Op 4 . + CDS 306232 - 306738 381 ## COG0535 Predicted Fe-S oxidoreductases 310 99 Op 5 . + CDS 306731 - 307303 411 ## CFF8240_1586 radical SAM family protein 311 99 Op 6 12/0.000 + CDS 307369 - 308148 706 ## COG3959 Transketolase, N-terminal subunit 312 99 Op 7 . + CDS 308145 - 309020 868 ## COG3958 Transketolase, C-terminal subunit 313 99 Op 8 . + CDS 309020 - 309682 466 ## Geob_0665 methyltransferase type 11 314 99 Op 9 . + CDS 309691 - 310755 908 ## COG0535 Predicted Fe-S oxidoreductases 315 99 Op 10 . + CDS 310766 - 311932 874 ## CFF8240_1594 hypothetical protein + Prom 312306 - 312365 12.9 316 100 Op 1 . + CDS 312390 - 313115 499 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 317 100 Op 2 . + CDS 313115 - 314044 657 ## amb0072 Fe-S oxidoreductase 318 100 Op 3 3/0.031 + CDS 313953 - 315647 1345 ## COG0500 SAM-dependent methyltransferases 319 100 Op 4 . + CDS 315640 - 316449 498 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 320 100 Op 5 . + CDS 316489 - 317565 1160 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 321 100 Op 6 . + CDS 317565 - 318518 668 ## COG0223 Methionyl-tRNA formyltransferase 322 100 Op 7 . + CDS 318520 - 319098 535 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 323 101 Tu 1 . + CDS 319660 - 320553 898 ## Geob_0668 glycosyl transferase family 9 + Prom 320558 - 320617 2.3 324 102 Op 1 . + CDS 320652 - 321833 813 ## CFF8240_1608 hypothetical protein 325 102 Op 2 . + CDS 321846 - 322715 683 ## CFF8240_1609 3-demethylubiquinone-9 3-methyltransferase 326 102 Op 3 . + CDS 322738 - 324171 882 ## WS2196 hypothetical protein 327 102 Op 4 . + CDS 324174 - 325616 784 ## WS2196 hypothetical protein 328 102 Op 5 . + CDS 325642 - 325842 181 ## gi|224417963|ref|ZP_03655969.1| hypothetical protein HcanM9_01684 329 102 Op 6 . + CDS 325811 - 327193 1097 ## DVU0182 radical SAM domain-containing protein 330 102 Op 7 . + CDS 327190 - 328617 1010 ## gi|224417965|ref|ZP_03655971.1| hypothetical protein HcanM9_01694 + Prom 328626 - 328685 8.5 331 103 Tu 1 . + CDS 328775 - 329917 922 ## WS2196 hypothetical protein + Prom 329922 - 329981 9.1 332 104 Op 1 . + CDS 330138 - 331940 1317 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) 333 104 Op 2 . + CDS 331928 - 333502 1133 ## CFF8240_1620 hypothetical protein + Term 333508 - 333549 2.2 334 105 Tu 1 1/0.173 + CDS 333559 - 334665 771 ## COG0438 Glycosyltransferase + Prom 334667 - 334726 2.5 335 106 Op 1 . + CDS 334746 - 336491 1238 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) 336 106 Op 2 . + CDS 336495 - 337604 781 ## gi|224417971|ref|ZP_03655977.1| hypothetical protein HcanM9_01724 337 106 Op 3 . + CDS 337597 - 338610 897 ## CHU_3215 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase 338 106 Op 4 . + CDS 338607 - 339755 788 ## gi|224417973|ref|ZP_03655979.1| hypothetical protein HcanM9_01734 339 106 Op 5 . + CDS 339779 - 340027 220 ## gi|224417974|ref|ZP_03655980.1| hypothetical protein HcanM9_01739 340 106 Op 6 . + CDS 340046 - 341737 1408 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) 341 106 Op 7 . + CDS 341734 - 342813 1087 ## COG1817 Uncharacterized protein conserved in archaea 342 106 Op 8 . + CDS 342807 - 343871 1279 ## COG0673 Predicted dehydrogenases and related proteins 343 106 Op 9 . + CDS 343868 - 344503 304 ## COG0223 Methionyl-tRNA formyltransferase 344 106 Op 10 . + CDS 344500 - 345024 500 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 345 106 Op 11 . + CDS 345025 - 345693 609 ## COG4122 Predicted O-methyltransferase 346 106 Op 12 . + CDS 345684 - 346784 1237 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 347 106 Op 13 . + CDS 346768 - 347292 529 ## COG0529 Adenylylsulfate kinase and related kinases 348 106 Op 14 . + CDS 347373 - 348587 409 ## gi|224417983|ref|ZP_03655989.1| hypothetical protein HcanM9_01784 + Prom 348623 - 348682 6.4 349 107 Op 1 17/0.000 + CDS 348706 - 349485 801 ## COG0500 SAM-dependent methyltransferases 350 107 Op 2 . + CDS 349530 - 350303 594 ## COG0500 SAM-dependent methyltransferases 351 107 Op 3 . + CDS 350287 - 351801 1107 ## CFF8240_1621 hypothetical protein + Term 351847 - 351916 24.5 + Prom 351822 - 351881 80.4 352 108 Op 1 1/0.173 + CDS 351941 - 354262 1981 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase 353 108 Op 2 . + CDS 354253 - 354873 490 ## COG2071 Predicted glutamine amidotransferases 354 108 Op 3 . + CDS 354849 - 355352 275 ## gi|313141533|ref|ZP_07803726.1| predicted protein 355 108 Op 4 . + CDS 355349 - 356455 992 ## Arnit_2936 CDP-glycerol:poly(glycerophosphate)glycerophosph otransferase 356 108 Op 5 . + CDS 356494 - 357210 649 ## COG1213 Predicted sugar nucleotidyltransferases 357 108 Op 6 . + CDS 357211 - 358056 961 ## COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase 358 108 Op 7 . + CDS 358117 - 360345 1989 ## COG0550 Topoisomerase IA 359 108 Op 8 . + CDS 360347 - 360751 394 ## COG5015 Uncharacterized conserved protein 360 108 Op 9 2/0.102 + CDS 360767 - 361606 813 ## COG0502 Biotin synthase and related enzymes 361 108 Op 10 . + CDS 361612 - 362454 759 ## COG1295 Predicted membrane protein 362 108 Op 11 . + CDS 362509 - 363834 1804 ## COG1253 Hemolysins and related proteins containing CBS domains 363 108 Op 12 . + CDS 363835 - 364020 164 ## gi|224417999|ref|ZP_03656005.1| hypothetical protein HcanM9_01864 364 108 Op 13 . + CDS 364032 - 364526 775 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 365 108 Op 14 . + CDS 364537 - 365022 588 ## WS2120 hypothetical protein 366 108 Op 15 . + CDS 365063 - 365965 795 ## COG1578 Uncharacterized conserved protein 367 108 Op 16 . + CDS 365959 - 367260 1738 ## COG2056 Predicted permease 368 108 Op 17 . + CDS 367277 - 368218 1176 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation + Prom 368250 - 368309 9.8 369 109 Op 1 12/0.000 + CDS 368359 - 369825 1190 ## COG3278 Cbb3-type cytochrome oxidase, subunit 1 370 109 Op 2 9/0.000 + CDS 369837 - 370520 952 ## COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit 371 109 Op 3 . + CDS 370523 - 370741 91 ## COG4736 Cbb3-type cytochrome oxidase, subunit 3 372 109 Op 4 . + CDS 370742 - 370912 190 ## WS0181 CB-type cytochrome c oxidase subunit III (EC:1.9.3.1) 373 109 Op 5 . + CDS 370888 - 371622 868 ## COG2010 Cytochrome c, mono- and diheme variants 374 109 Op 6 . + CDS 371632 - 371835 343 ## HH1260 hypothetical protein 375 109 Op 7 . + CDS 371839 - 371949 97 ## 376 109 Op 8 . + CDS 371951 - 372532 604 ## WS0184 hypothetical protein 377 109 Op 9 . + CDS 372532 - 373017 723 ## WS0185 hypothetical protein 378 109 Op 10 . + CDS 373060 - 373590 489 ## Bmur_0241 hypothetical protein 379 109 Op 11 . + CDS 373625 - 374620 922 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases 380 109 Op 12 . + CDS 374683 - 376122 1289 ## COG1748 Saccharopine dehydrogenase and related proteins 381 109 Op 13 . + CDS 376202 - 378781 2595 ## COG2189 Adenine specific DNA methylase Mod 382 109 Op 14 . + CDS 378783 - 380306 858 ## C8J_0266 hypothetical protein 383 109 Op 15 . + CDS 380313 - 381308 960 ## COG3943 Virulence protein 384 109 Op 16 . + CDS 381308 - 383785 2112 ## C8J_0265 hypothetical protein + Prom 384339 - 384398 6.4 385 110 Op 1 . + CDS 384422 - 385075 727 ## COG3545 Predicted esterase of the alpha/beta hydrolase fold + Prom 385085 - 385144 2.8 386 110 Op 2 31/0.000 + CDS 385165 - 385896 770 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 387 110 Op 3 34/0.000 + CDS 385912 - 386589 884 ## COG0765 ABC-type amino acid transport system, permease component 388 110 Op 4 . + CDS 386582 - 387310 579 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 387341 - 387379 -0.2 - Term 387210 - 387246 -1.0 389 111 Op 1 . - CDS 387368 - 389320 1623 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 390 111 Op 2 . - CDS 389317 - 389799 645 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis 391 111 Op 3 . - CDS 389861 - 390862 417 ## PROTEIN SUPPORTED gi|46129221|ref|ZP_00155777.2| COG1194: A/G-specific DNA glycosylase 392 111 Op 4 . - CDS 390866 - 391864 960 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - Prom 391888 - 391947 8.3 - Term 391943 - 391987 7.4 393 112 Tu 1 . - CDS 391995 - 393092 1459 ## COG1064 Zn-dependent alcohol dehydrogenases 394 113 Tu 1 . - CDS 394674 - 396314 1908 ## gi|253827363|ref|ZP_04870248.1| vacuolating cytotoxin precursor - Prom 396416 - 396475 10.0 395 114 Op 1 . - CDS 396620 - 397840 1149 ## COG0303 Molybdopterin biosynthesis enzyme 396 114 Op 2 . - CDS 397850 - 398437 670 ## COG0807 GTP cyclohydrolase II - Prom 398477 - 398536 8.3 + Prom 398396 - 398455 8.4 397 115 Op 1 8/0.000 + CDS 398572 - 399261 589 ## COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase 398 115 Op 2 . + CDS 399239 - 399505 522 ## COG0298 Hydrogenase maturation factor 399 116 Tu 1 . - CDS 399530 - 400921 1709 ## COG0114 Fumarase - Prom 401038 - 401097 9.4 + Prom 401017 - 401076 8.2 400 117 Tu 1 . + CDS 401150 - 402244 1377 ## COG0840 Methyl-accepting chemotaxis protein + Term 402485 - 402513 -0.0 - Term 402243 - 402288 7.2 401 118 Op 1 . - CDS 402289 - 403341 1245 ## COG0451 Nucleoside-diphosphate-sugar epimerases 402 118 Op 2 . - CDS 403345 - 404463 1367 ## COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase - Prom 404568 - 404627 9.6 + Prom 404622 - 404681 8.9 403 119 Op 1 20/0.000 + CDS 404724 - 405827 1574 ## COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component 404 119 Op 2 24/0.000 + CDS 405837 - 406736 971 ## COG0559 Branched-chain amino acid ABC-type transport system, permease components 405 119 Op 3 19/0.000 + CDS 406753 - 407952 1277 ## COG4177 ABC-type branched-chain amino acid transport system, permease component 406 119 Op 4 18/0.000 + CDS 407952 - 408725 266 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 407 119 Op 5 . + CDS 408712 - 409407 250 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Prom 409425 - 409484 13.6 408 120 Op 1 59/0.000 + CDS 409518 - 409937 733 ## PROTEIN SUPPORTED gi|224418046|ref|ZP_03656052.1| 50S ribosomal protein L13 409 120 Op 2 . + CDS 409947 - 410336 650 ## PROTEIN SUPPORTED gi|224418047|ref|ZP_03656053.1| 30S ribosomal protein S9 410 120 Op 3 . + CDS 410212 - 412392 1255 ## COG1287 Uncharacterized membrane protein, required for N-linked glycosylation 411 120 Op 4 . + CDS 412394 - 414217 1571 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) + Term 414239 - 414278 1.3 + Prom 414257 - 414316 8.3 412 121 Tu 1 . + CDS 414369 - 414785 534 ## WS0834 hypothetical protein + Term 414812 - 414846 4.6 + Prom 414853 - 414912 10.5 413 122 Op 1 10/0.000 + CDS 415079 - 415420 279 ## COG3162 Predicted membrane protein 414 122 Op 2 . + CDS 415423 - 417072 2177 ## COG4147 Predicted symporter + Prom 417094 - 417153 7.6 415 123 Tu 1 . + CDS 417242 - 418273 707 ## COG1275 Tellurite resistance protein and related permeases + Term 418502 - 418552 -0.3 - Term 418259 - 418296 -0.5 416 124 Tu 1 . - CDS 418297 - 420081 1785 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase 417 125 Op 1 . - CDS 420154 - 420381 165 ## gi|224418055|ref|ZP_03656061.1| hypothetical protein HcanM9_02144 418 125 Op 2 . - CDS 420381 - 420614 471 ## gi|224418056|ref|ZP_03656062.1| hypothetical protein HcanM9_02149 - Prom 420642 - 420701 7.6 419 126 Tu 1 . - CDS 420770 - 421522 798 ## CCC13826_0803 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3) - Prom 421551 - 421610 9.9 + Prom 421522 - 421581 9.4 420 127 Op 1 . + CDS 421700 - 423676 1990 ## COG0556 Helicase subunit of the DNA excision repair complex 421 127 Op 2 32/0.000 + CDS 423724 - 424818 955 ## COG1135 ABC-type metal ion transport system, ATPase component 422 127 Op 3 22/0.000 + CDS 424815 - 425528 1014 ## COG2011 ABC-type metal ion transport system, permease component 423 127 Op 4 . + CDS 425538 - 426356 976 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 424 127 Op 5 . + CDS 426392 - 427987 184 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 425 128 Tu 1 . - CDS 428125 - 428622 604 ## WS0892 hypothetical protein - Prom 428655 - 428714 8.1 + Prom 428891 - 428950 6.0 426 129 Tu 1 . + CDS 428993 - 429319 501 ## COG0151 Phosphoribosylamine-glycine ligase 427 130 Op 1 3/0.031 + CDS 429636 - 430397 821 ## COG0151 Phosphoribosylamine-glycine ligase 428 130 Op 2 3/0.031 + CDS 430397 - 430852 432 ## COG1714 Predicted membrane protein/domain 429 130 Op 3 1/0.173 + CDS 430865 - 432181 1405 ## COG1452 Organic solvent tolerance protein OstA + Term 432407 - 432475 30.4 430 131 Op 1 2/0.102 + CDS 432525 - 433289 684 ## COG1452 Organic solvent tolerance protein OstA 431 131 Op 2 2/0.102 + CDS 433307 - 433984 515 ## COG1926 Predicted phosphoribosyltransferases 432 131 Op 3 . + CDS 434001 - 436148 186 ## PROTEIN SUPPORTED gi|118443587|ref|YP_877456.1| 30S ribosomal protein S1 433 132 Op 1 34/0.000 - CDS 436171 - 436923 596 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 434 132 Op 2 31/0.000 - CDS 436920 - 437636 560 ## COG0765 ABC-type amino acid transport system, permease component 435 132 Op 3 . - CDS 437638 - 438411 873 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 436 132 Op 4 . - CDS 438421 - 439581 1416 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases - Prom 439716 - 439775 9.3 437 133 Op 1 . - CDS 439848 - 443816 2204 ## COG0286 Type I restriction-modification system methyltransferase subunit 438 133 Op 2 . - CDS 443856 - 444104 385 ## WS1260 hypothetical protein 439 133 Op 3 . - CDS 444113 - 444526 435 ## COG0824 Predicted thioesterase - Prom 444563 - 444622 6.5 - TRNA 444663 - 444747 77.2 # Leu TAG 0 0 440 134 Tu 1 . - CDS 444806 - 445864 880 ## COG2957 Peptidylarginine deiminase and related enzymes - Prom 445892 - 445951 7.3 + Prom 445629 - 445688 6.0 441 135 Op 1 . + CDS 445932 - 446549 877 ## WS1599 hypothetical protein 442 135 Op 2 . + CDS 446527 - 447582 562 ## PROTEIN SUPPORTED gi|229879751|ref|ZP_04499249.1| (SSU ribosomal protein S18P)-alanine acetyltransferase 443 136 Tu 1 . - CDS 447613 - 448914 1502 ## COG0124 Histidyl-tRNA synthetase - Prom 448966 - 449025 15.5 + Prom 448971 - 449030 12.0 444 137 Op 1 3/0.031 + CDS 449074 - 449277 358 ## PROTEIN SUPPORTED gi|224418082|ref|ZP_03656088.1| 50S ribosomal protein L31 445 137 Op 2 3/0.031 + CDS 449288 - 450106 951 ## COG0313 Predicted methyltransferases 446 137 Op 3 . + CDS 450142 - 450828 211 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 447 137 Op 4 . + CDS 450815 - 451738 1254 ## CCV52592_0831 hypothetical protein 448 137 Op 5 . + CDS 451732 - 451944 84 ## gi|253827415|ref|ZP_04870300.1| conserved hypothetical protein 449 137 Op 6 . + CDS 451994 - 452572 492 ## WS0448 hypothetical protein 450 137 Op 7 . + CDS 452583 - 453794 1199 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 451 137 Op 8 . + CDS 453802 - 456204 2242 ## COG2217 Cation transport ATPase + Prom 456206 - 456265 7.1 452 138 Op 1 . + CDS 456286 - 456666 513 ## gi|224418090|ref|ZP_03656096.1| hypothetical protein HcanM9_02321 453 138 Op 2 . + CDS 456663 - 458333 2032 ## COG0277 FAD/FMN-containing dehydrogenases 454 138 Op 3 . + CDS 458330 - 458767 493 ## ebA299 p-cresol methylhydroxylase subunit + Term 458776 - 458819 8.3 - Term 458598 - 458637 -0.6 455 139 Tu 1 . - CDS 458781 - 461459 2534 ## COG0474 Cation transport ATPase - Prom 461631 - 461690 8.5 456 140 Op 1 . - CDS 461727 - 462353 413 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent 457 140 Op 2 . - CDS 462430 - 462750 592 ## gi|224418095|ref|ZP_03656101.1| hypothetical protein HcanM9_02346 458 140 Op 3 . - CDS 462761 - 463174 413 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP - Prom 463235 - 463294 80.3 459 141 Op 1 2/0.102 - CDS 463596 - 464471 780 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP 460 141 Op 2 17/0.000 - CDS 464481 - 466031 1539 ## COG0497 ATPase involved in DNA repair 461 141 Op 3 . - CDS 466031 - 466879 817 ## COG0061 Predicted sugar kinase 462 141 Op 4 . - CDS 466876 - 467556 761 ## WS1624 hypothetical protein 463 141 Op 5 1/0.173 - CDS 467558 - 468373 713 ## COG2214 DnaJ-class molecular chaperone 464 141 Op 6 6/0.000 - CDS 468373 - 470418 1362 ## COG0699 Predicted GTPases (dynamin-related) 465 141 Op 7 . - CDS 470411 - 472687 2079 ## COG0699 Predicted GTPases (dynamin-related) 466 141 Op 8 . - CDS 472692 - 473837 1028 ## COG0477 Permeases of the major facilitator superfamily - Prom 473906 - 473965 10.8 + Prom 473919 - 473978 15.4 467 142 Op 1 3/0.031 + CDS 474030 - 474476 729 ## PROTEIN SUPPORTED gi|224418105|ref|ZP_03656111.1| 50S ribosomal protein L9 468 142 Op 2 24/0.000 + CDS 474476 - 475012 744 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 469 142 Op 3 3/0.031 + CDS 475036 - 476376 1073 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 470 142 Op 4 2/0.102 + CDS 476385 - 477269 902 ## COG1159 GTPase 471 142 Op 5 . + CDS 477282 - 478277 1168 ## COG3034 Uncharacterized protein conserved in bacteria + Term 478315 - 478345 -0.4 472 143 Tu 1 . - CDS 478263 - 478880 262 ## PROTEIN SUPPORTED gi|162456259|ref|YP_001618626.1| putative ribosomal protein - Prom 478926 - 478985 7.6 + Prom 478862 - 478921 7.7 473 144 Op 1 2/0.102 + CDS 478956 - 480317 1330 ## COG0477 Permeases of the major facilitator superfamily 474 144 Op 2 . + CDS 480326 - 481099 750 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control + Term 481103 - 481141 -0.6 475 145 Op 1 21/0.000 - CDS 481131 - 482336 1265 ## COG0282 Acetate kinase 476 145 Op 2 . - CDS 482346 - 483347 1214 ## COG0280 Phosphotransacetylase - Prom 483373 - 483432 7.4 477 146 Op 1 . - CDS 483438 - 484706 886 ## COG0166 Glucose-6-phosphate isomerase 478 146 Op 2 . - CDS 484703 - 485698 1072 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase - Prom 485757 - 485816 7.9 + Prom 485665 - 485724 9.1 479 147 Op 1 . + CDS 485932 - 486222 481 ## COG0776 Bacterial nucleoid DNA-binding protein + Term 486237 - 486265 -1.0 + TRNA 486272 - 486348 75.6 # Arg CCT 0 0 + Prom 486274 - 486333 79.2 480 147 Op 2 . + CDS 486383 - 487087 984 ## COG2859 Uncharacterized protein conserved in bacteria + Term 487207 - 487258 -0.7 481 148 Op 1 2/0.102 - CDS 487084 - 487656 326 ## COG1040 Predicted amidophosphoribosyltransferases 482 148 Op 2 3/0.031 - CDS 487644 - 488228 583 ## COG0125 Thymidylate kinase 483 148 Op 3 . - CDS 488212 - 488712 324 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 484 148 Op 4 . - CDS 488713 - 489717 975 ## COG0418 Dihydroorotase 485 148 Op 5 . - CDS 489717 - 491084 1646 ## COG1109 Phosphomannomutase 486 148 Op 6 . - CDS 491093 - 492316 993 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 487 148 Op 7 . - CDS 492316 - 492528 230 ## WS1478 hypothetical protein - Prom 492639 - 492698 80.4 488 149 Op 1 . - CDS 493930 - 494385 596 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 489 149 Op 2 3/0.031 - CDS 494453 - 495529 859 ## COG0859 ADP-heptose:LPS heptosyltransferase 490 149 Op 3 3/0.031 - CDS 495526 - 496434 906 ## COG1560 Lauroyl/myristoyl acyltransferase 491 149 Op 4 2/0.102 - CDS 496431 - 497432 705 ## COG0859 ADP-heptose:LPS heptosyltransferase 492 149 Op 5 3/0.031 - CDS 497426 - 498883 1282 ## COG0248 Exopolyphosphatase 493 149 Op 6 . - CDS 498883 - 499134 428 ## COG1145 Ferredoxin - Prom 499171 - 499230 3.2 494 150 Tu 1 . - CDS 499393 - 501435 2219 ## COG0751 Glycyl-tRNA synthetase, beta subunit - Prom 501458 - 501517 10.9 + Prom 501490 - 501549 10.1 495 151 Tu 1 . + CDS 501573 - 502886 795 ## COG0642 Signal transduction histidine kinase + Prom 502922 - 502981 6.5 496 152 Tu 1 . + CDS 503002 - 504621 1945 ## COG0840 Methyl-accepting chemotaxis protein + Term 504862 - 504904 -1.0 - Term 504570 - 504608 0.6 497 153 Tu 1 . - CDS 504618 - 505571 408 ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase - Prom 505697 - 505756 12.2 498 154 Tu 1 . + CDS 505736 - 506071 544 ## gi|224418137|ref|ZP_03656143.1| hypothetical protein HcanM9_02558 + Term 506080 - 506126 11.2 499 155 Op 1 . - CDS 506073 - 506399 327 ## gi|224418138|ref|ZP_03656144.1| hypothetical protein HcanM9_02563 500 155 Op 2 3/0.031 - CDS 506386 - 508053 2019 ## COG0465 ATP-dependent Zn proteases 501 155 Op 3 3/0.031 - CDS 508040 - 509311 261 ## PROTEIN SUPPORTED gi|229216491|ref|ZP_04342811.1| SSU ribosomal protein S12P methylthiotransferase 502 155 Op 4 3/0.031 - CDS 509321 - 510982 1555 ## COG0668 Small-conductance mechanosensitive channel 503 155 Op 5 . - CDS 510979 - 512001 799 ## COG0337 3-dehydroquinate synthetase - Prom 512024 - 512083 12.0 + Prom 511983 - 512042 11.1 504 156 Op 1 12/0.000 + CDS 512197 - 512550 428 ## COG2076 Membrane transporters of cations and cationic drugs 505 156 Op 2 . + CDS 512550 - 512873 313 ## COG2076 Membrane transporters of cations and cationic drugs + Term 512914 - 512953 0.9 506 157 Tu 1 . - CDS 513002 - 514168 1554 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 514395 - 514454 12.2 + Prom 514357 - 514416 11.8 507 158 Op 1 41/0.000 + CDS 514456 - 514716 458 ## COG0234 Co-chaperonin GroES (HSP10) 508 158 Op 2 . + CDS 514746 - 516386 1771 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 + Term 516413 - 516454 4.5 509 159 Op 1 . - CDS 516585 - 517700 1384 ## COG0409 Hydrogenase maturation factor 510 159 Op 2 . - CDS 517763 - 518215 320 ## gi|224418149|ref|ZP_03656155.1| hypothetical protein HcanM9_02618 - Prom 518434 - 518493 5.7 + Prom 518137 - 518196 9.3 511 160 Op 1 1/0.173 + CDS 518284 - 519120 671 ## COG0130 Pseudouridine synthase 512 160 Op 2 3/0.031 + CDS 519114 - 519344 306 ## COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing) 513 160 Op 3 3/0.031 + CDS 519345 - 520100 752 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase 514 160 Op 4 2/0.102 + CDS 520103 - 520561 363 ## COG0691 tmRNA-binding protein 515 160 Op 5 30/0.000 + CDS 520572 - 521045 427 ## COG0811 Biopolymer transport proteins 516 160 Op 6 . + CDS 521055 - 521444 511 ## COG0848 Biopolymer transport protein 517 160 Op 7 . + CDS 521444 - 521626 228 ## gi|224418156|ref|ZP_03656162.1| hypothetical protein HcanM9_02653 518 160 Op 8 . + CDS 521627 - 524248 2840 ## WS0888 hypothetical protein 519 160 Op 9 . + CDS 524248 - 525039 855 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 520 161 Op 1 2/0.102 - CDS 525046 - 525738 593 ## COG0692 Uracil DNA glycosylase 521 161 Op 2 . - CDS 525738 - 526031 399 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 522 161 Op 3 . - CDS 526028 - 526675 686 ## COG1309 Transcriptional regulator - Prom 526800 - 526859 7.6 + Prom 526691 - 526750 6.2 523 162 Op 1 3/0.031 + CDS 526840 - 527313 541 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 524 162 Op 2 . + CDS 527313 - 528518 1725 ## COG0527 Aspartokinases 525 162 Op 3 . + CDS 528518 - 529063 708 ## WS1730 hypothetical protein 526 162 Op 4 3/0.031 + CDS 529065 - 529700 647 ## COG0470 ATPase involved in DNA replication 527 162 Op 5 . + CDS 529725 - 530855 996 ## COG0294 Dihydropteroate synthase and related enzymes 528 162 Op 6 . + CDS 530855 - 531835 1007 ## HH0622 hypothetical protein + Prom 531855 - 531914 9.4 529 163 Op 1 . + CDS 532014 - 532955 816 ## COG1408 Predicted phosphohydrolases 530 163 Op 2 . + CDS 533020 - 535413 2271 ## WS0490 flagellar functional protein 531 163 Op 3 . + CDS 535403 - 535627 355 ## gi|224418170|ref|ZP_03656176.1| hypothetical protein HcanM9_02723 532 163 Op 4 . + CDS 535624 - 536400 718 ## COG0388 Predicted amidohydrolase + Prom 536402 - 536461 3.5 533 164 Op 1 . + CDS 536485 - 538335 2372 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 534 164 Op 2 . + CDS 538410 - 541925 3842 ## COG0587 DNA polymerase III, alpha subunit 535 164 Op 3 . + CDS 541913 - 542284 286 ## WS1982 hypothetical protein 536 164 Op 4 . + CDS 542289 - 543041 788 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Term 543154 - 543201 2.3 - Term 542955 - 543000 1.4 537 165 Op 1 . - CDS 543038 - 543568 473 ## PROTEIN SUPPORTED gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 538 165 Op 2 4/0.000 - CDS 543565 - 544050 386 ## COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein 539 165 Op 3 21/0.000 - CDS 544047 - 544487 532 ## COG0314 Molybdopterin converting factor, large subunit 540 165 Op 4 . - CDS 544502 - 544723 436 ## COG1977 Molybdopterin converting factor, small subunit 541 165 Op 5 . - CDS 544735 - 545058 282 ## gi|224418180|ref|ZP_03656186.1| hypothetical protein HcanM9_02773 - Prom 545090 - 545149 4.9 + Prom 545054 - 545113 10.3 542 166 Op 1 . + CDS 545139 - 545513 590 ## COG0251 Putative translation initiation inhibitor, yjgF family + Prom 545518 - 545577 8.7 543 166 Op 2 32/0.000 + CDS 545608 - 545919 516 ## PROTEIN SUPPORTED gi|224418182|ref|ZP_03656188.1| 50S ribosomal protein L21 544 166 Op 3 14/0.000 + CDS 545941 - 546198 441 ## PROTEIN SUPPORTED gi|224418183|ref|ZP_03656189.1| 50S ribosomal protein L27 + Term 546209 - 546242 -0.8 545 166 Op 4 7/0.000 + CDS 546252 - 547352 1305 ## COG0536 Predicted GTPase 546 166 Op 5 1/0.173 + CDS 547339 - 548115 925 ## COG0263 Glutamate 5-kinase 547 166 Op 6 3/0.031 + CDS 548137 - 549039 836 ## COG0223 Methionyl-tRNA formyltransferase 548 166 Op 7 3/0.031 + CDS 549039 - 549671 540 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase 549 166 Op 8 25/0.000 + CDS 549690 - 550475 947 ## COG1192 ATPases involved in chromosome partitioning 550 166 Op 9 3/0.031 + CDS 550475 - 551368 851 ## COG1475 Predicted transcriptional regulators 551 166 Op 10 14/0.000 + CDS 551433 - 551858 463 ## COG0711 F0F1-type ATP synthase, subunit b 552 166 Op 11 38/0.000 + CDS 551867 - 552382 520 ## COG0711 F0F1-type ATP synthase, subunit b 553 166 Op 12 41/0.000 + CDS 552384 - 552920 459 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 554 166 Op 13 42/0.000 + CDS 552941 - 554455 2098 ## COG0056 F0F1-type ATP synthase, alpha subunit 555 166 Op 14 42/0.000 + CDS 554469 - 555353 1031 ## COG0224 F0F1-type ATP synthase, gamma subunit 556 166 Op 15 42/0.000 + CDS 555366 - 556781 1517 ## COG0055 F0F1-type ATP synthase, beta subunit 557 166 Op 16 3/0.031 + CDS 556791 - 557183 457 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) 558 166 Op 17 30/0.000 + CDS 557180 - 557746 625 ## COG0811 Biopolymer transport proteins 559 166 Op 18 . + CDS 557816 - 558151 422 ## COG0848 Biopolymer transport protein 560 166 Op 19 . + CDS 558144 - 558896 657 ## WS0520 hypothetical protein 561 166 Op 20 20/0.000 + CDS 558897 - 560177 1215 ## COG0823 Periplasmic component of the Tol biopolymer transport system 562 166 Op 21 . + CDS 560254 - 560778 763 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 563 166 Op 22 . + CDS 560794 - 561678 672 ## WS0523 hypothetical protein 564 166 Op 23 . + CDS 561694 - 562209 933 ## COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 565 166 Op 24 . + CDS 562242 - 562889 464 ## COG0585 Uncharacterized conserved protein 566 166 Op 25 2/0.102 + CDS 562927 - 563376 262 ## COG0585 Uncharacterized conserved protein 567 166 Op 26 2/0.102 + CDS 563376 - 564299 1250 ## COG0501 Zn-dependent protease with chaperone function 568 166 Op 27 . + CDS 564309 - 564851 640 ## COG0302 GTP cyclohydrolase I 569 167 Op 1 . - CDS 564867 - 565766 1004 ## COG4866 Uncharacterized conserved protein 570 167 Op 2 . - CDS 565809 - 566060 423 ## gi|224418209|ref|ZP_03656215.1| hypothetical protein HcanM9_02918 571 167 Op 3 15/0.000 - CDS 566047 - 566427 548 ## COG1516 Flagellin-specific chaperone FliS 572 167 Op 4 9/0.000 - CDS 566448 - 568517 2926 ## COG1345 Flagellar capping protein 573 167 Op 5 2/0.102 - CDS 568530 - 568898 567 ## COG1334 Uncharacterized flagellar protein FlaG 574 167 Op 6 . - CDS 568973 - 570202 1514 ## COG0739 Membrane proteins related to metalloendopeptidases 575 167 Op 7 . - CDS 570204 - 571010 845 ## WS0147 hypothetical protein 576 167 Op 8 3/0.031 - CDS 570997 - 571665 624 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 577 167 Op 9 3/0.031 - CDS 571668 - 572897 1029 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 578 167 Op 10 3/0.031 - CDS 572897 - 574162 1303 ## COG3401 Fibronectin type 3 domain-containing protein - Prom 574186 - 574245 6.8 579 167 Op 11 . - CDS 574256 - 575215 658 ## COG0564 Pseudouridylate synthases, 23S RNA-specific - Prom 575296 - 575355 11.0 + Prom 575435 - 575494 4.9 580 168 Tu 1 . + CDS 575552 - 576487 986 ## COG0772 Bacterial cell division membrane protein + Term 576497 - 576564 30.2 + TRNA 576475 - 576551 91.7 # Met CAT 0 0 + Prom 576489 - 576548 68.4 581 169 Op 1 . + CDS 576583 - 576804 391 ## gi|242310706|ref|ZP_04809861.1| predicted protein 582 169 Op 2 . + CDS 576820 - 577647 1056 ## COG1076 DnaJ-domain-containing proteins 1 583 169 Op 3 . + CDS 577637 - 577894 246 ## gi|253827548|ref|ZP_04870433.1| conserved hypothetical protein + Prom 577938 - 577997 80.4 584 170 Tu 1 . + CDS 578029 - 579681 1777 ## WS1211 CiaB protein + Term 579760 - 579830 12.2 + Prom 579730 - 579789 80.4 585 171 Op 1 13/0.000 + CDS 579911 - 580582 515 ## COG1352 Methylase of chemotaxis methyl-accepting proteins 586 171 Op 2 . + CDS 580584 - 581237 865 ## COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain 587 171 Op 3 . + CDS 581237 - 581824 494 ## COG1739 Uncharacterized conserved protein 588 171 Op 4 . + CDS 581824 - 582555 627 ## gi|224418227|ref|ZP_03656233.1| hypothetical protein HcanM9_03010 + Prom 583015 - 583074 6.8 589 172 Op 1 2/0.102 + CDS 583097 - 583903 1060 ## COG0413 Ketopantoate hydroxymethyltransferase 590 172 Op 2 . + CDS 583940 - 584914 1259 ## COG2255 Holliday junction resolvasome, helicase subunit + Term 584942 - 584974 -0.9 - Term 584926 - 584964 2.1 591 173 Tu 1 . - CDS 584990 - 587614 3615 ## COG1344 Flagellin and related hook-associated proteins - Prom 587687 - 587746 5.5 + Prom 587713 - 587772 7.3 592 174 Op 1 3/0.031 + CDS 587804 - 589555 2019 ## COG0173 Aspartyl-tRNA synthetase 593 174 Op 2 2/0.102 + CDS 589565 - 590137 746 ## COG0563 Adenylate kinase and related kinases 594 174 Op 3 . + CDS 590148 - 590669 698 ## COG0221 Inorganic pyrophosphatase + Term 590774 - 590818 4.5 + Prom 590729 - 590788 7.4 595 175 Op 1 . + CDS 590832 - 591851 361 ## PROTEIN SUPPORTED gi|239995924|ref|ZP_04716448.1| ribosomal protein L22 596 175 Op 2 . + CDS 591881 - 592483 477 ## HH1869 hypothetical protein 597 175 Op 3 . + CDS 592493 - 593770 775 ## PROTEIN SUPPORTED gi|90020581|ref|YP_526408.1| ribosomal protein L16 598 175 Op 4 . + CDS 593793 - 594542 707 ## COG0785 Cytochrome c biogenesis protein 599 175 Op 5 . + CDS 594543 - 595010 234 ## PROTEIN SUPPORTED gi|229531703|ref|ZP_04421088.1| acetyltransferase, ribosomal protein N-acetylase 600 175 Op 6 . + CDS 595053 - 595685 626 ## COG0223 Methionyl-tRNA formyltransferase + Prom 595725 - 595784 7.6 601 176 Op 1 3/0.031 + CDS 595806 - 597446 1737 ## COG0504 CTP synthase (UTP-ammonia lyase) 602 176 Op 2 . + CDS 597436 - 599016 1344 ## COG0608 Single-stranded DNA-specific exonuclease 603 177 Op 1 1/0.173 - CDS 599001 - 601421 2232 ## COG1033 Predicted exporters of the RND superfamily 604 177 Op 2 5/0.000 - CDS 601421 - 601996 623 ## COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component 605 177 Op 3 . - CDS 602000 - 602698 801 ## COG2853 Surface lipoprotein 606 177 Op 4 3/0.031 - CDS 602691 - 604568 2215 ## COG1154 Deoxyxylulose-5-phosphate synthase 607 177 Op 5 15/0.000 - CDS 604568 - 605353 1146 ## COG1317 Flagellar biosynthesis/type III secretory pathway protein 608 177 Op 6 19/0.000 - CDS 605430 - 606464 1303 ## COG1536 Flagellar motor switch protein 609 177 Op 7 1/0.173 - CDS 606467 - 608197 2078 ## COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein 610 177 Op 8 . - CDS 608205 - 609305 1230 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase 611 177 Op 9 . - CDS 609382 - 610809 1511 ## WS1918 hypothetical protein - Prom 610846 - 610905 4.2 612 178 Op 1 9/0.000 - CDS 610910 - 612169 1300 ## COG1538 Outer membrane protein 613 178 Op 2 27/0.000 - CDS 612159 - 615278 3995 ## COG0841 Cation/multidrug efflux pump 614 178 Op 3 . - CDS 615288 - 616316 1154 ## COG0845 Membrane-fusion protein - Prom 616382 - 616441 11.1 + Prom 616143 - 616202 4.6 615 179 Op 1 . + CDS 616429 - 618420 1437 ## COG1287 Uncharacterized membrane protein, required for N-linked glycosylation 616 179 Op 2 . + CDS 618431 - 618904 653 ## COG0315 Molybdenum cofactor biosynthesis enzyme + Prom 618913 - 618972 5.3 617 179 Op 3 . + CDS 618996 - 620138 1648 ## COG0840 Methyl-accepting chemotaxis protein + Term 620256 - 620295 3.4 + Prom 620193 - 620252 6.4 618 180 Tu 1 . + CDS 620310 - 620783 748 ## COG3193 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol + Term 620941 - 620988 0.0 619 181 Tu 1 . - CDS 620959 - 622728 595 ## COG0270 Site-specific DNA methylase - Prom 622942 - 623001 7.3 + Prom 622747 - 622806 11.1 620 182 Op 1 . + CDS 622828 - 624060 857 ## HPP12_0046 restriction endonuclease 621 182 Op 2 . + CDS 624083 - 624685 316 ## gi|224418260|ref|ZP_03656266.1| hypothetical protein HcanM9_03175 622 183 Op 1 . - CDS 624694 - 624858 203 ## gi|224418261|ref|ZP_03656267.1| hypothetical protein HcanM9_03180 623 183 Op 2 . - CDS 624872 - 626680 483 ## Cj0033 putative integral membrane protein 624 183 Op 3 . - CDS 626715 - 628376 693 ## Cla_0838 KAP family 625 183 Op 4 . - CDS 628376 - 632284 1890 ## COG1002 Type II restriction enzyme, methylase subunits - Prom 632309 - 632368 2.0 626 184 Op 1 3/0.031 - CDS 632385 - 632750 558 ## COG0789 Predicted transcriptional regulators 627 184 Op 2 . - CDS 632760 - 633641 1172 ## COG2214 DnaJ-class molecular chaperone - Prom 633679 - 633738 6.1 + Prom 633696 - 633755 8.2 628 185 Tu 1 . + CDS 633775 - 635040 1012 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) + Term 635266 - 635332 30.0 + Prom 635374 - 635433 2.9 629 186 Op 1 2/0.102 + CDS 635455 - 636822 1103 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 630 186 Op 2 2/0.102 + CDS 636823 - 638148 1684 ## COG3004 Na+/H+ antiporter + Prom 638176 - 638235 7.5 631 187 Op 1 25/0.000 + CDS 638320 - 638589 414 ## COG1862 Preprotein translocase subunit YajC 632 187 Op 2 31/0.000 + CDS 638595 - 640172 1990 ## COG0342 Preprotein translocase subunit SecD 633 187 Op 3 . + CDS 640172 - 641143 1206 ## COG0341 Preprotein translocase subunit SecF 634 187 Op 4 . + CDS 641153 - 641494 490 ## Suden_1573 hypothetical protein 635 187 Op 5 . + CDS 641504 - 643942 2869 ## COG0495 Leucyl-tRNA synthetase 636 187 Op 6 . + CDS 643944 - 644444 381 ## WS1244 hypothetical protein 637 187 Op 7 . + CDS 644444 - 645619 1153 ## WS1243 hypothetical protein 638 187 Op 8 3/0.031 + CDS 645612 - 646751 1200 ## COG0285 Folylpolyglutamate synthase 639 187 Op 9 7/0.000 + CDS 646742 - 647677 1063 ## COG0739 Membrane proteins related to metalloendopeptidases 640 187 Op 10 3/0.031 + CDS 647596 - 648036 574 ## COG1664 Integral membrane protein CcmA involved in cell shape determination + Prom 648048 - 648107 3.7 641 188 Op 1 . + CDS 648134 - 651037 3192 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 642 188 Op 2 . + CDS 651054 - 651869 1036 ## COG1692 Uncharacterized protein conserved in bacteria 643 188 Op 3 . + CDS 651896 - 653752 1868 ## COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases + Term 653768 - 653827 -0.8 - Term 653764 - 653806 -0.9 644 189 Tu 1 . - CDS 653819 - 654361 604 ## gi|224418283|ref|ZP_03656289.1| hypothetical protein HcanM9_03290 - Prom 654523 - 654582 6.8 + Prom 654384 - 654443 8.0 645 190 Tu 1 . + CDS 654468 - 655100 383 ## WS1936 hypothetical protein 646 191 Op 1 1/0.173 - CDS 655090 - 655623 539 ## COG1267 Phosphatidylglycerophosphatase A and related proteins 647 191 Op 2 1/0.173 - CDS 655633 - 656817 1090 ## COG2046 ATP sulfurylase (sulfate adenylyltransferase) 648 191 Op 3 3/0.031 - CDS 656795 - 657685 873 ## COG0784 FOG: CheY-like receiver 649 191 Op 4 1/0.173 - CDS 657695 - 658843 1144 ## COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase - Prom 658866 - 658925 3.9 - Term 658871 - 658912 3.4 650 192 Op 1 . - CDS 658929 - 660572 2169 ## COG0840 Methyl-accepting chemotaxis protein 651 192 Op 2 3/0.031 - CDS 660627 - 661916 1204 ## COG0247 Fe-S oxidoreductase 652 192 Op 3 . - CDS 661925 - 663295 1278 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 653 192 Op 4 . - CDS 663307 - 663735 418 ## CCC13826_0886 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1) 654 192 Op 5 . - CDS 663714 - 663953 128 ## COG0078 Ornithine carbamoyltransferase - Prom 664014 - 664073 25.3 - Term 664029 - 664073 10.8 655 193 Tu 1 . - CDS 664075 - 664665 847 ## COG0078 Ornithine carbamoyltransferase - Prom 664700 - 664759 9.9 + Prom 664685 - 664744 8.9 656 194 Tu 1 . + CDS 664769 - 665113 354 ## COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) 657 195 Op 1 . - CDS 665091 - 665582 509 ## COG0219 Predicted rRNA methylase (SpoU class) 658 195 Op 2 . - CDS 665587 - 665883 294 ## gi|224418297|ref|ZP_03656303.1| hypothetical protein HcanM9_03360 659 195 Op 3 . - CDS 665917 - 666393 716 ## COG1607 Acyl-CoA hydrolase - Prom 666490 - 666549 8.8 + Prom 666490 - 666549 9.5 660 196 Tu 1 . + CDS 666569 - 667651 856 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase + Term 667688 - 667722 -0.8 - Term 667915 - 667951 -0.8 661 197 Op 1 20/0.000 - CDS 667952 - 668443 716 ## COG0835 Chemotaxis signal transduction protein 662 197 Op 2 20/0.000 - CDS 668443 - 670839 3032 ## COG0643 Chemotaxis protein histidine kinase and related kinases 663 197 Op 3 . - CDS 670871 - 671836 1005 ## COG0835 Chemotaxis signal transduction protein 664 197 Op 4 . - CDS 671836 - 672252 138 ## WS2085 hypothetical protein - Prom 672471 - 672530 80.3 - Term 672339 - 672406 30.2 665 198 Op 1 . - CDS 672532 - 672741 157 ## gi|253827626|ref|ZP_04870511.1| conserved hypothetical protein 666 198 Op 2 . - CDS 672742 - 673752 1251 ## COG0002 Acetylglutamate semialdehyde dehydrogenase 667 198 Op 3 . - CDS 673823 - 674020 399 ## gi|224418306|ref|ZP_03656312.1| thiamine biosynthesis protein ThiS 668 198 Op 4 . - CDS 674065 - 675372 1280 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) - Prom 675399 - 675458 9.8 + Prom 675343 - 675402 13.7 669 199 Op 1 19/0.000 + CDS 675494 - 676258 1050 ## COG1291 Flagellar motor component 670 199 Op 2 . + CDS 676277 - 677107 926 ## COG1360 Flagellar motor protein 671 199 Op 3 . + CDS 677117 - 677869 883 ## COG1338 Flagellar biosynthesis pathway, component FliP 672 199 Op 4 . + CDS 677869 - 678312 295 ## SUN_1832 tRNA (uracil-5-)-methyltransferase (EC:2.1.1.35) 673 200 Tu 1 . + CDS 678680 - 679189 719 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 674 201 Op 1 . - CDS 679190 - 679846 545 ## COG0177 Predicted EndoIII-related endonuclease 675 201 Op 2 . - CDS 679858 - 680778 1003 ## WS1062 hypothetical protein - Prom 680866 - 680925 2.1 - Term 681040 - 681107 13.3 676 202 Tu 1 . - CDS 681253 - 682626 935 ## WS1062 hypothetical protein - Prom 682659 - 682718 4.0 + Prom 682406 - 682465 4.7 677 203 Tu 1 . + CDS 682559 - 683509 708 ## COG1559 Predicted periplasmic solute-binding protein + Prom 683563 - 683622 7.9 678 204 Op 1 . + CDS 683654 - 684601 1246 ## COG0039 Malate/lactate dehydrogenases 679 204 Op 2 8/0.000 + CDS 684674 - 684985 479 ## COG1146 Ferredoxin 680 204 Op 3 23/0.000 + CDS 684930 - 686123 1392 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit 681 204 Op 4 22/0.000 + CDS 686125 - 686958 1016 ## COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit 682 204 Op 5 . + CDS 686955 - 687518 784 ## COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit + Term 687528 - 687577 4.0 + Prom 687613 - 687672 9.3 683 205 Op 1 . + CDS 687777 - 689315 1202 ## COG1145 Ferredoxin 684 205 Op 2 . + CDS 689325 - 689927 678 ## WS1144 hypothetical protein + Prom 689930 - 689989 5.7 685 206 Op 1 . + CDS 690010 - 690204 272 ## WS0732 hypothetical protein 686 206 Op 2 5/0.000 + CDS 690218 - 690772 903 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 687 206 Op 3 16/0.000 + CDS 690821 - 693043 2379 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 688 206 Op 4 12/0.000 + CDS 693053 - 693682 671 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 689 206 Op 5 1/0.173 + CDS 693692 - 694639 1198 ## COG2864 Cytochrome b subunit of formate dehydrogenase 690 206 Op 6 . + CDS 694641 - 695423 796 ## COG1526 Uncharacterized protein required for formate dehydrogenase activity + Prom 695466 - 695525 9.2 691 207 Op 1 . + CDS 695557 - 696192 471 ## gi|253827649|ref|ZP_04870534.1| hypothetical protein HCAN_1001 692 207 Op 2 . + CDS 696192 - 697031 248 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains + Prom 697073 - 697132 11.0 693 208 Tu 1 . + CDS 697168 - 698277 1354 ## HH1023 hypothetical protein + Term 698314 - 698362 12.4 694 209 Tu 1 . - CDS 698352 - 699269 748 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 - Prom 699293 - 699352 14.5 + Prom 699409 - 699468 15.2 695 210 Tu 1 . + CDS 699495 - 702044 2975 ## COG1049 Aconitase B + Term 702054 - 702095 3.5 + Prom 702255 - 702314 12.6 696 211 Tu 1 . + CDS 702355 - 703386 1379 ## COG1858 Cytochrome c peroxidase + Term 703395 - 703431 4.2 - Term 703312 - 703371 2.1 697 212 Tu 1 . - CDS 703413 - 703892 593 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - Prom 703912 - 703971 7.6 + Prom 703890 - 703949 6.6 698 213 Op 1 . + CDS 703986 - 704669 654 ## gi|253827656|ref|ZP_04870541.1| hypothetical protein HCAN_1008 + Prom 704671 - 704730 4.2 699 213 Op 2 . + CDS 704752 - 707247 3189 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 700 213 Op 3 . + CDS 707247 - 707657 395 ## WS0366 hypothetical protein 701 213 Op 4 1/0.173 + CDS 707657 - 708955 1467 ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 702 213 Op 5 . + CDS 708966 - 709991 1376 ## COG0136 Aspartate-semialdehyde dehydrogenase 703 213 Op 6 . + CDS 710005 - 710463 600 ## COG0394 Protein-tyrosine-phosphatase 704 214 Tu 1 . - CDS 710467 - 710793 456 ## HMU00530 thiosulfate sulfurtransferase GlpE - Prom 710836 - 710895 9.1 + Prom 710737 - 710796 5.2 705 215 Op 1 1/0.173 + CDS 710830 - 711525 748 ## COG1587 Uroporphyrinogen-III synthase 706 215 Op 2 . + CDS 711518 - 712870 1455 ## COG0534 Na+-driven multidrug efflux pump + Prom 712918 - 712977 8.3 707 216 Op 1 4/0.000 + CDS 713006 - 714412 2056 ## COG1027 Aspartate ammonia-lyase 708 216 Op 2 . + CDS 714422 - 715768 1922 ## COG2704 Anaerobic C4-dicarboxylate transporter + Term 715773 - 715810 3.2 709 217 Op 1 . - CDS 715812 - 716552 725 ## COG0501 Zn-dependent protease with chaperone function 710 217 Op 2 . - CDS 716573 - 718375 2092 ## COG0481 Membrane GTPase LepA - Prom 718548 - 718607 8.4 + Prom 718423 - 718482 9.4 711 218 Op 1 2/0.102 + CDS 718548 - 719381 903 ## COG0616 Periplasmic serine proteases (ClpP class) 712 218 Op 2 . + CDS 719381 - 720214 881 ## COG0788 Formyltetrahydrofolate hydrolase 713 218 Op 3 . + CDS 720277 - 721122 733 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 714 219 Tu 1 . - CDS 721137 - 721595 473 ## COG3019 Predicted metal-binding protein - Prom 721692 - 721751 7.8 + Prom 721676 - 721735 6.2 715 220 Tu 1 . + CDS 721876 - 722937 1442 ## COG0582 Integrase - Term 722905 - 722944 1.0 716 221 Op 1 . - CDS 722967 - 724091 970 ## Ctha_0023 KWG repeat protein 717 221 Op 2 . - CDS 724091 - 724708 460 ## COG1076 DnaJ-domain-containing proteins 1 - Prom 724953 - 725012 7.7 718 221 Op 3 . - CDS 725059 - 727185 2537 ## COG1749 Flagellar hook protein FlgE - Prom 727295 - 727354 80.3 - Term 727225 - 727295 10.6 719 222 Op 1 . - CDS 727356 - 727475 120 ## gi|253827676|ref|ZP_04870561.1| flagellar hook protein 720 222 Op 2 . - CDS 727486 - 728556 1716 ## COG1843 Flagellar hook capping protein 721 222 Op 3 . - CDS 728569 - 730488 1761 ## HH0185 hypothetical protein - Prom 730552 - 730611 6.5 + Prom 730546 - 730605 7.2 722 223 Op 1 . + CDS 730658 - 732457 2676 ## COG1217 Predicted membrane GTPase involved in stress response 723 223 Op 2 . + CDS 732483 - 734855 2598 ## COG0209 Ribonucleotide reductase, alpha subunit + Term 735090 - 735156 30.0 + Prom 735071 - 735130 80.4 724 224 Tu 1 . + CDS 735226 - 736365 987 ## COG1875 Predicted ATPase related to phosphate starvation-inducible protein PhoH 725 225 Op 1 . - CDS 736358 - 737608 1275 ## COG1570 Exonuclease VII, large subunit 726 225 Op 2 . - CDS 737608 - 739398 1955 ## COG5016 Pyruvate/oxaloacetate carboxyltransferase - Prom 739489 - 739548 6.4 - Term 739471 - 739524 8.6 727 226 Op 1 . - CDS 739553 - 740233 1087 ## Sulku_1189 hypothetical protein 728 226 Op 2 . - CDS 740254 - 742815 3401 ## COG0013 Alanyl-tRNA synthetase 729 226 Op 3 . - CDS 742893 - 745730 510 ## PROTEIN SUPPORTED gi|167010850|ref|ZP_02275781.1| ribosomal protein L36, putative 730 226 Op 4 2/0.102 - CDS 745733 - 746851 1036 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 731 226 Op 5 1/0.173 - CDS 746907 - 747611 761 ## COG0500 SAM-dependent methyltransferases 732 226 Op 6 3/0.031 - CDS 747604 - 748524 985 ## COG0196 FAD synthase 733 226 Op 7 . - CDS 748448 - 749176 605 ## COG1189 Predicted rRNA methylase 734 226 Op 8 . - CDS 749179 - 749676 450 ## WS0584 hypothetical protein 735 226 Op 9 . - CDS 749670 - 751001 1406 ## COG1004 Predicted UDP-glucose 6-dehydrogenase - Prom 751035 - 751094 7.8 736 227 Op 1 . + CDS 751155 - 752066 1137 ## COG0540 Aspartate carbamoyltransferase, catalytic chain 737 227 Op 2 . + CDS 752084 - 752686 684 ## COG1280 Putative threonine efflux protein + Prom 752691 - 752750 6.3 738 228 Op 1 2/0.102 + CDS 752882 - 754198 1955 ## COG1158 Transcription termination factor 739 228 Op 2 . + CDS 754200 - 754979 762 ## COG0796 Glutamate racemase - Term 754854 - 754913 1.9 740 229 Op 1 . - CDS 755001 - 755738 788 ## WS0211 hypothetical protein 741 229 Op 2 40/0.000 - CDS 755766 - 757067 1004 ## COG0642 Signal transduction histidine kinase 742 229 Op 3 . - CDS 757046 - 757717 851 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 757756 - 757815 12.0 - Term 757928 - 757975 -0.7 743 230 Op 1 . - CDS 758026 - 759378 1450 ## COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase - Prom 759398 - 759457 4.4 744 230 Op 2 . - CDS 759460 - 760743 1724 ## COG0372 Citrate synthase - Prom 760811 - 760870 10.8 745 231 Op 1 . - CDS 760874 - 761395 630 ## COG2834 Outer membrane lipoprotein-sorting protein 746 231 Op 2 . - CDS 761397 - 761879 609 ## COG2862 Predicted membrane protein - Prom 761934 - 761993 8.3 747 232 Tu 1 . - CDS 761995 - 763011 1307 ## COG0407 Uroporphyrinogen-III decarboxylase - Prom 763160 - 763219 14.1 + Prom 763032 - 763091 8.7 748 233 Op 1 3/0.031 + CDS 763138 - 765696 3100 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) 749 233 Op 2 . + CDS 765693 - 766913 977 ## COG4591 ABC-type transport system, involved in lipoprotein release, permease component + Prom 766915 - 766974 4.5 750 233 Op 3 . + CDS 767003 - 767782 499 ## CJJ81176_1605 hypothetical protein 751 234 Op 1 . - CDS 767763 - 769295 1813 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) 752 234 Op 2 3/0.031 - CDS 769310 - 770377 792 ## COG0795 Predicted permeases 753 234 Op 3 22/0.000 - CDS 770378 - 770950 517 ## COG0193 Peptidyl-tRNA hydrolase 754 234 Op 4 2/0.102 - CDS 770954 - 771490 889 ## PROTEIN SUPPORTED gi|224418392|ref|ZP_03656398.1| 50S ribosomal protein L25/general stress protein Ctc 755 234 Op 5 1/0.173 - CDS 771557 - 772561 1122 ## COG0176 Transaldolase 756 234 Op 6 . - CDS 772573 - 773157 672 ## COG0560 Phosphoserine phosphatase 757 235 Tu 1 . - CDS 773623 - 776046 2806 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase - Prom 776072 - 776131 10.6 + Prom 776134 - 776193 7.4 758 236 Op 1 . + CDS 776234 - 778444 2748 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 759 236 Op 2 . + CDS 778359 - 778841 286 ## WS0828 hypothetical protein 760 237 Tu 1 . - CDS 778847 - 780064 725 ## Cla_0642 glycosyltransferase - Prom 780104 - 780163 9.2 + Prom 780119 - 780178 10.2 761 238 Op 1 . + CDS 780241 - 780894 787 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) 762 238 Op 2 . + CDS 780878 - 781207 260 ## WS1319 hypothetical protein 763 238 Op 3 . + CDS 781207 - 781548 518 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family 764 238 Op 4 . + CDS 781542 - 782867 1029 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 765 238 Op 5 . + CDS 782857 - 783594 861 ## COG1121 ABC-type Mn/Zn transport systems, ATPase component 766 238 Op 6 . + CDS 783606 - 784961 1695 ## COG0579 Predicted dehydrogenase + Prom 784980 - 785039 4.2 767 239 Op 1 . + CDS 785059 - 785781 691 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 768 239 Op 2 . + CDS 785781 - 785993 247 ## gi|224418406|ref|ZP_03656412.1| hypothetical protein HcanM9_03915 769 239 Op 3 . + CDS 786049 - 786195 206 ## gi|253827725|ref|ZP_04870610.1| conserved hypothetical protein 770 240 Op 1 . - CDS 787616 - 787753 68 ## gi|253827726|ref|ZP_04870611.1| conserved hypothetical protein 771 240 Op 2 . - CDS 787804 - 788418 695 ## COG0778 Nitroreductase 772 240 Op 3 2/0.102 - CDS 788435 - 789412 1171 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 773 240 Op 4 . - CDS 789390 - 791063 1272 ## COG0358 DNA primase (bacterial type) - Prom 791087 - 791146 5.5 774 241 Op 1 . + CDS 791285 - 792229 933 ## HH0697 hypothetical protein 775 241 Op 2 3/0.031 + CDS 792204 - 792635 456 ## COG0328 Ribonuclease HI 776 241 Op 3 3/0.031 + CDS 792638 - 793312 686 ## COG0571 dsRNA-specific ribonuclease 777 241 Op 4 . + CDS 793309 - 794379 1142 ## COG0082 Chorismate synthase 778 241 Op 5 . + CDS 794379 - 795293 717 ## COG3980 Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase 779 241 Op 6 . + CDS 795360 - 796730 1490 ## COG0733 Na+-dependent transporters of the SNF family - Term 796588 - 796633 -0.5 780 242 Tu 1 . - CDS 796872 - 797699 826 ## HH1598 hypothetical protein - Prom 797946 - 798005 6.9 - Term 798002 - 798043 -1.0 781 243 Op 1 . - CDS 798140 - 798547 438 ## NIS_1802 periplasmic nitrate reductase component NapD (EC:1.7.99.4) 782 243 Op 2 . - CDS 798557 - 799510 902 ## WS1171 putative periplasmic protein 783 243 Op 3 . - CDS 799504 - 800022 188 ## COG1145 Ferredoxin 784 243 Op 4 4/0.000 - CDS 800019 - 800543 753 ## COG3043 Nitrate reductase cytochrome c-type subunit 785 243 Op 5 7/0.000 - CDS 800545 - 801342 699 ## COG0348 Polyferredoxin 786 243 Op 6 10/0.000 - CDS 801342 - 802121 994 ## COG1145 Ferredoxin 787 243 Op 7 . - CDS 802127 - 804913 3101 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Prom 804948 - 805007 8.6 788 244 Op 1 . - CDS 805055 - 806014 1255 ## COG0835 Chemotaxis signal transduction protein 789 244 Op 2 . - CDS 806070 - 807773 254 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 790 244 Op 3 . - CDS 807773 - 809707 2016 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 809741 - 809800 5.0 791 245 Op 1 . - CDS 809817 - 810509 639 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 792 245 Op 2 . - CDS 810589 - 810888 234 ## COG4378 Uncharacterized protein conserved in bacteria - Prom 810951 - 811010 18.5 + Prom 810986 - 811045 15.2 793 246 Tu 1 . + CDS 811077 - 811526 629 ## COG0735 Fe2+/Zn2+ uptake regulation proteins 794 247 Op 1 . - CDS 811548 - 812006 538 ## COG2236 Predicted phosphoribosyltransferases 795 247 Op 2 . - CDS 812016 - 813071 1034 ## COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes - Prom 813110 - 813169 12.2 + Prom 813110 - 813169 8.3 796 248 Op 1 6/0.000 + CDS 813326 - 813844 528 ## COG2202 FOG: PAS/PAC domain 797 248 Op 2 13/0.000 + CDS 813841 - 814437 561 ## COG0840 Methyl-accepting chemotaxis protein + Prom 814439 - 814498 38.9 798 248 Op 3 . + CDS 814532 - 815263 588 ## COG0840 Methyl-accepting chemotaxis protein 799 249 Op 1 . - CDS 815266 - 817290 1808 ## COG0210 Superfamily I DNA and RNA helicases 800 249 Op 2 . - CDS 817297 - 817689 534 ## COG1699 Uncharacterized protein conserved in bacteria - Prom 817818 - 817877 7.1 + Prom 817659 - 817718 11.4 801 250 Tu 1 . + CDS 817852 - 820491 2542 ## COG0525 Valyl-tRNA synthetase - Term 820437 - 820485 5.1 802 251 Op 1 . - CDS 820488 - 821552 1003 ## COG0628 Predicted permease 803 251 Op 2 . - CDS 821552 - 822934 1194 ## COG0348 Polyferredoxin - Prom 823078 - 823137 7.3 + Prom 823019 - 823078 7.5 804 252 Tu 1 . + CDS 823111 - 823323 352 ## PROTEIN SUPPORTED gi|224418443|ref|ZP_03656449.1| 30S ribosomal protein S21 + Term 823332 - 823372 7.7 + Prom 823408 - 823467 7.3 805 253 Tu 1 . + CDS 823492 - 823974 622 ## gi|224418444|ref|ZP_03656450.1| hypothetical protein HcanM9_04105 806 254 Op 1 3/0.031 - CDS 824009 - 825112 1609 ## COG0012 Predicted GTPase, probable translation factor 807 254 Op 2 3/0.031 - CDS 825122 - 826447 1234 ## COG0260 Leucyl aminopeptidase - Prom 826623 - 826682 80.3 - Term 826462 - 826530 13.5 808 255 Op 1 . - CDS 826737 - 827327 836 ## COG0586 Uncharacterized membrane-associated protein 809 255 Op 2 . - CDS 827407 - 827763 502 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase 810 255 Op 3 1/0.173 - CDS 827773 - 829269 1458 ## COG1410 Methionine synthase I, cobalamin-binding domain 811 255 Op 4 . - CDS 829275 - 831212 2131 ## COG1410 Methionine synthase I, cobalamin-binding domain 812 255 Op 5 5/0.000 - CDS 831222 - 831782 601 ## COG0586 Uncharacterized membrane-associated protein - Prom 831806 - 831865 9.5 813 255 Op 6 3/0.031 - CDS 831870 - 832592 704 ## COG0101 Pseudouridylate synthase 814 255 Op 7 1/0.173 - CDS 832593 - 833618 859 ## COG0795 Predicted permeases 815 255 Op 8 . - CDS 833695 - 834417 427 ## COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases - Prom 834437 - 834496 7.1 + Prom 834389 - 834448 7.7 816 256 Op 1 14/0.000 + CDS 834469 - 835071 375 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 817 256 Op 2 . + CDS 835023 - 835364 345 ## COG0799 Uncharacterized homolog of plant Iojap protein - Term 835206 - 835250 4.3 818 257 Op 1 1/0.173 - CDS 835432 - 836184 834 ## COG4221 Short-chain alcohol dehydrogenase of unknown specificity 819 257 Op 2 4/0.000 - CDS 836201 - 837499 1269 ## COG0457 FOG: TPR repeat 820 257 Op 3 1/0.173 - CDS 837483 - 837860 378 ## COG0727 Predicted Fe-S-cluster oxidoreductase 821 257 Op 4 . - CDS 837854 - 838546 595 ## COG4123 Predicted O-methyltransferase 822 257 Op 5 . - CDS 838547 - 839047 294 ## WS1755 hypothetical protein 823 257 Op 6 1/0.173 - CDS 839014 - 839139 72 ## COG3018 Uncharacterized protein conserved in bacteria - Prom 839281 - 839340 80.3 824 258 Op 1 . - CDS 839342 - 839758 611 ## COG3018 Uncharacterized protein conserved in bacteria - Term 839775 - 839812 -0.9 825 258 Op 2 . - CDS 839820 - 841736 1798 ## COG2604 Uncharacterized protein conserved in bacteria - Prom 841834 - 841893 8.6 + Prom 841764 - 841823 9.2 826 259 Op 1 . + CDS 841870 - 842424 613 ## COG3963 Phospholipid N-methyltransferase 827 259 Op 2 . + CDS 842493 - 843422 1040 ## COG0462 Phosphoribosylpyrophosphate synthetase 828 259 Op 3 . + CDS 843394 - 843963 707 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family + Term 843973 - 844017 -0.8 - Term 843953 - 844013 8.5 829 260 Tu 1 . - CDS 844083 - 845402 1628 ## WS1237 hypothetical protein - Prom 845453 - 845512 7.4 + Prom 845471 - 845530 12.3 830 261 Op 1 . + CDS 845555 - 846205 353 ## COG1573 Uracil-DNA glycosylase 831 261 Op 2 . + CDS 846189 - 847418 1214 ## COG5659 FOG: Transposase 832 261 Op 3 . + CDS 847405 - 848076 310 ## WS1298 hypothetical protein 833 262 Tu 1 . - CDS 848073 - 849011 906 ## COG0583 Transcriptional regulator - Prom 849042 - 849101 9.2 + Prom 849056 - 849115 10.0 834 263 Tu 1 . + CDS 849136 - 851244 1884 ## COG0210 Superfamily I DNA and RNA helicases 835 264 Tu 1 . - CDS 851246 - 852061 782 ## COG1968 Uncharacterized bacitracin resistance protein - Prom 852257 - 852316 14.1 + Prom 852233 - 852292 12.7 836 265 Tu 1 . + CDS 852357 - 854453 2252 ## COG4771 Outer membrane receptor for ferrienterochelin and colicins + Prom 854611 - 854670 7.8 837 266 Op 1 . + CDS 854746 - 856167 1953 ## COG0439 Biotin carboxylase 838 266 Op 2 . + CDS 856245 - 856379 231 ## PROTEIN SUPPORTED gi|224418476|ref|ZP_03656482.1| 50S ribosomal protein L34 839 266 Op 3 16/0.000 + CDS 856401 - 856727 122 ## COG0594 RNase P protein component 840 266 Op 4 18/0.000 + CDS 856736 - 856945 194 ## COG0759 Uncharacterized conserved protein + Term 857091 - 857157 30.0 841 267 Op 1 . + CDS 857296 - 858906 1529 ## COG0706 Preprotein translocase subunit YidC 842 267 Op 2 . + CDS 858903 - 859598 686 ## NIS_0882 hypothetical protein 843 267 Op 3 . + CDS 859582 - 860967 1368 ## COG0486 Predicted GTPase 844 268 Op 1 . - CDS 860993 - 861556 522 ## gi|313142013|ref|ZP_07804206.1| predicted protein 845 268 Op 2 . - CDS 861519 - 861815 415 ## Abu_1008 hypothetical protein 846 268 Op 3 . - CDS 861805 - 863124 1803 ## COG0001 Glutamate-1-semialdehyde aminotransferase 847 268 Op 4 . - CDS 863135 - 864307 1379 ## COG0754 Glutathionylspermidine synthase 848 268 Op 5 . - CDS 864310 - 864942 682 ## WS0575 hypothetical protein - Prom 864964 - 865023 8.3 + Prom 864896 - 864955 8.7 849 269 Tu 1 . + CDS 865192 - 866595 1477 ## WS1780 hypothetical protein + Term 866596 - 866637 5.7 + Prom 866678 - 866737 15.0 850 270 Op 1 . + CDS 866802 - 868133 1712 ## COG0422 Thiamine biosynthesis protein ThiC 851 270 Op 2 . + CDS 868148 - 869263 1449 ## COG0489 ATPases involved in chromosome partitioning + Term 869269 - 869311 5.2 852 271 Op 1 . - CDS 869316 - 870176 715 ## COG0611 Thiamine monophosphate kinase 853 271 Op 2 9/0.000 - CDS 870195 - 871022 391 ## PROTEIN SUPPORTED gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 854 271 Op 3 2/0.102 - CDS 871032 - 872027 1029 ## COG0379 Quinolinate synthase 855 271 Op 4 . - CDS 872030 - 872812 435 ## COG0688 Phosphatidylserine decarboxylase 856 271 Op 5 . - CDS 872815 - 873528 674 ## COG2935 Putative arginyl-tRNA:protein arginylyltransferase 857 271 Op 6 . - CDS 873528 - 874775 1558 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 858 271 Op 7 . - CDS 874820 - 875371 685 ## COG0693 Putative intracellular protease/amidase 859 271 Op 8 2/0.102 - CDS 875381 - 875944 792 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) 860 271 Op 9 3/0.031 - CDS 875961 - 876884 1261 ## COG0191 Fructose/tagatose bisphosphate aldolase 861 271 Op 10 . - CDS 876893 - 877708 1146 ## COG0760 Parvulin-like peptidyl-prolyl isomerase - Prom 877776 - 877835 11.1 - Term 877842 - 877889 12.6 862 272 Tu 1 . - CDS 877895 - 879370 1692 ## COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit - Term 879414 - 879472 8.3 863 273 Op 1 1/0.173 - CDS 879688 - 880005 560 ## COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit 864 273 Op 2 . - CDS 880025 - 880498 534 ## COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit - Prom 880552 - 880611 5.0 865 274 Op 1 . - CDS 880660 - 881289 874 ## COG2860 Predicted membrane protein 866 274 Op 2 . - CDS 881291 - 881413 61 ## gi|253827817|ref|ZP_04870702.1| conserved hypothetical protein - Prom 881499 - 881558 50.8 - Term 881467 - 881500 -0.5 867 275 Tu 1 . - CDS 881560 - 882549 1215 ## COG4940 Competence protein ComGF - Prom 882759 - 882818 8.4 + Prom 883016 - 883075 2.9 868 276 Tu 1 . + CDS 883194 - 884216 1163 ## COG0309 Hydrogenase maturation factor + Term 884253 - 884300 6.5 - Term 884129 - 884179 3.0 869 277 Tu 1 . - CDS 884294 - 885217 1039 ## COG2931 RTX toxins and related Ca2+-binding proteins - Prom 885343 - 885402 80.3 - Term 885259 - 885326 18.5 870 278 Tu 1 . - CDS 885404 - 885913 539 ## gi|253827820|ref|ZP_04870705.1| hypothetical protein HCAN_1174 - Prom 886084 - 886143 12.8 + Prom 886075 - 886134 12.7 871 279 Tu 1 . + CDS 886188 - 887543 1732 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase + Term 887574 - 887604 1.0 + Prom 887551 - 887610 5.6 872 280 Op 1 . + CDS 887657 - 888379 514 ## COG1793 ATP-dependent DNA ligase 873 280 Op 2 . + CDS 888427 - 889065 907 ## COG2095 Multiple antibiotic transporter 874 281 Tu 1 . + CDS 889516 - 889771 200 ## COG2833 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|197325098|gb|DS990368.1| GENE 1 1 - 738 274 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227372256|ref|ZP_03855738.1| SSU ribosomal protein S12P methylthiotransferase [Veillonella parvula DSM 2008] # 1 244 1 248 449 110 28 2e-22 MNKKLYIETLGCAMNERDSEHIIAELEEKENYTLTEDPKEADLILINTCSVREKPEKKLF SEIGQYAKIKKEDAKIGVCGCTASHLGNEILKKSKAVNFVLGARNVSKISQILHKDRVAW VDIDYDDSTYVFSSKHNSTLKGMINISIGCDKQCTYCIVPHTRGNEISIPADLILKEAKK LVDNGTKEILLLGQNVNNYGRRFSNDHRKINFTQLLNEISQINGLERIRFTSPHPLHMDD EFINEF >gi|197325098|gb|DS990368.1| GENE 2 760 - 1002 357 80 aa, chain - ## HITS:1 COG:no KEGG:WS1777 NR:ns ## KEGG: WS1777 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 80 1 80 80 93 66.0 3e-18 MDIKLVREHINEKPQKVTIKKLEEMLETKKMDIFYCDKENSHKDMMALMDYFEKKGKHVY FREVKYGLDEGDYMYEFHIL >gi|197325098|gb|DS990368.1| GENE 3 1138 - 2127 1069 329 aa, chain + ## HITS:1 COG:Cj1293 KEGG:ns NR:ns ## COG: Cj1293 COG1086 # Protein_GI_number: 15792616 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate sugar epimerases # Organism: Campylobacter jejuni # 1 327 1 328 334 480 69.0 1e-135 MFNGKNILITGGTGSFGKQYTKTLLERYKPQKIVIFSRDELKQYEMAQVYNDSCMRYFLG DVRDEARLKEATNGIDFIIHAAALKQVPAAEYNPTECIKTNIYGAQNVISAALANGVEKV IALSTDKAANPINLYGATKLASDKLFVAANNMTGSRKTRFSVVRYGNVIGSRGSVVPFFQ KLIAQGAKELPITDTEMTRFMITLQQGVDFVLKNFERMKGGETFVPKIPSMKITEVAKAL APNLPHKIIGIRPGEKIHETMCPSDDSHITYEFSDHFVIAPTIQFNFITDFSTNALGEVG KLVKRGFEYNSGSNTQWLNTEAFLKLLGD >gi|197325098|gb|DS990368.1| GENE 4 2129 - 3289 1234 386 aa, chain + ## HITS:1 COG:MJ1066 KEGG:ns NR:ns ## COG: MJ1066 COG0399 # Protein_GI_number: 15669255 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Methanococcus jannaschii # 2 381 7 380 386 283 38.0 6e-76 MIPYGKQEIIQEDIQSVLEVLQSPFITQGPKVTEFESQIAAKVGAKYAVGVNSATSALHC AILALGLREGDWLWTTPISFVASSNCALYCGAKVDFVDIDKKTYNLDVNLLEEKLKKTKK SKLPKVLVAVHFAGQSCEMERIWQLSQKYGFKIVEDASHALGGKYRTYPIGNCRFSDIVV FSFHPVKIITSAEGGMAVTNNLKYAEKMQKLRSHGITKEKEEFENKKNVVPWYYEQQILG YNYRLSDLHASLGISQLKRLDTYVQKRNELAKFYNERLADLEITLPFVESHNYSAFHLYV ILLNKNSGIKRRELYMRLLELGIAPQVHYIPIHLQPFYARFGFKKGDFKNAEKYYKNTLT LPLYPTLTFEEQEKVIEALRRWIVCK >gi|197325098|gb|DS990368.1| GENE 5 3280 - 3960 830 226 aa, chain + ## HITS:1 COG:Cj1311 KEGG:ns NR:ns ## COG: Cj1311 COG1083 # Protein_GI_number: 15792634 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: CMP-N-acetylneuraminic acid synthetase # Organism: Campylobacter jejuni # 6 220 4 226 232 195 48.0 6e-50 MQVECICIIPARGGSKRIPRKNIKNFLGKPILAYSIENAKDSGIFSKIYVSSEDGEILEC AKQFGALPLERAEALSGDFIGTREVIIEGIQKLKLQDEWVCCLYATAPLLNAKRLQEAFL CRDDSCYLLSAVEYDYSPFRAFRIEENKNKMLFVQHFTKRSQDLEKIYHDAGQFYFARAK VWQNRENIFEDSKSFLLSRREVQDIDTLEDWEEAEIKYQILKQREE >gi|197325098|gb|DS990368.1| GENE 6 3941 - 5356 1295 471 aa, chain - ## HITS:1 COG:jhp0267 KEGG:ns NR:ns ## COG: jhp0267 COG3400 # Protein_GI_number: 15611337 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori J99 # 1 470 1 477 478 281 34.0 1e-75 MRKVLLILDGIVAKEFATTIMNKYFDENYYIFVSIDKNLLPKNQTEYHESYQFDPCSSRK LREILSPQITDCYIVTEQKEDREIIYNTLRAYSKNIQITILGELTLTEESKEDKQLNLIN KSSVLSAKLFEKFPNVPRTAKYIGLGQGEIMQISVPFGSPYAYRSVGVIKQKKWKIAVIY RNNEVILPKYSTTIFPNDSLLLVGDPTTLWDIYHRIKEEIGQFPTPFGRDVVLYFDLLNP ENLEICLDQTLWLFSKFKNKRLHLCFYNPSSLQDLEIIKNHPNLNQDNISWHIEFYETSL KNIILRDKNNKNIGLILIDKHIFESHKNFLFDLGIPLLKFGNSPLNSLTHSAVIIPKKTE EAEKISSVVFDFSTQIGLKILLYDFDPDKNYHEQAIDYYYHIEKVFDKKIELIKSDTLNP IIWLNRQKQTLQILPLKKETLQKPLWFSLAEIENLSTHLPSVPQLFIPLSV >gi|197325098|gb|DS990368.1| GENE 7 5405 - 6538 1192 377 aa, chain + ## HITS:1 COG:jhp0266 KEGG:ns NR:ns ## COG: jhp0266 COG0343 # Protein_GI_number: 15611336 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Helicobacter pylori J99 # 1 371 1 362 371 473 61.0 1e-133 MEFNLQKIDGKARAGVLKLAHGEIQTPIFMPVGTQACVKALDFNDLLALNAPIILGNTYH LYLRPGSEIVKQLGGLHHFSRFPRNFLTDSGGFQAFSLSDHVKVSDEGILFKSHIDGSKH FFTPQKVLEIQYDLNSDIMMILDDLVGLPASKERILKSINRTSKWANEAITFHNAQKIQA REQGREFTNHIFAINQGGTDREFREISAKDLTSMADFDGYAIGGLAVGEPNELMYETLEF TTPLLPKDKPRYLMGVGTPQDIVEAIARGVDMFDCVMPTRNARNGTIFTHFGKLSIKSPR FKLDTMPLDSKCHCYTCQNFSRAYLHHLFRAGEMTYFRLASIHNLAYYLDLVREAREAIL KGEFQDFYQKFYSNLEN >gi|197325098|gb|DS990368.1| GENE 8 6620 - 7288 616 222 aa, chain + ## HITS:1 COG:Cj0045c KEGG:ns NR:ns ## COG: Cj0045c COG2703 # Protein_GI_number: 15791444 # Func_class: P Inorganic ion transport and metabolism # Function: Hemerythrin # Organism: Campylobacter jejuni # 2 204 3 205 240 108 31.0 1e-23 MLEWSEEFSIKNLLLDDEHKYLFQCLAIANRLANSPIENKEKLLLALINRFLEYTITHFK DEENHMQRVYFPFAEQHKRSHNGLVNILQNFKIDSKDTQKSCEKFYVFSKNWLINHILKE DKRLEAYHSCLVDAGEIPYSLEQQTKIMALSQNIHKIEEQKHHNYICLCPTKVFEVCDSL HEMMQTKQTFLRCKACKQPLVLIDERLQEEQYYETLTKKYFQ >gi|197325098|gb|DS990368.1| GENE 9 7300 - 9036 1679 578 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0059 NR:ns ## KEGG: JJD26997_0059 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 9 511 6 556 622 130 27.0 2e-28 MLFASRGYKIFEKIGDVKSFLKEQSQIHQEEMDFYLLDFITLCSRQGEDNFKSISTLNLF DKDTNYIAKVDIKQLYKIEVCKKKERENLPFKIELMPQVDTILMATLIPMVRIERYERLK SDIYQELYRAMMLEGYLIGIREFNELNLQIDAFIENLKAHSIAPKITFKVASGVASCEGE SEKLEIYHKMQDESAACDLRTKFIPKICLKAVHKGDLLLDYTKAIKGHIGRDLKGEILSI KPIKSHQIRNDSSIVALEDSTHIKFCARKDGFLKEIAPLYFIIDDELNAKKQETANSLKI LKINGLTHTDSRIEAKIAYIKSHKGNIKADMVVINVLEKGIVEAKVAYVESMLGGKIIAD YVYVKNIRSYNEIYFRHSLVVDNILGEHNLFEYNPTKFAFSKKDRAEYLVLKNKLQVSLK HLRKRMDEVYTFLLAMQSKVHKIVYDFQDKTIPKSLQNILDQYDKSLKNYQDLLEEYRDI VNINYHNERLLENIDKAILGAKVVICGEIGEAETIIRFKFYNNEEEVLLRALLSKENPAR FFEVIEDNNRLKIQALEDYDDKQRDWIAEFFPRENLVN >gi|197325098|gb|DS990368.1| GENE 10 9165 - 10928 1980 587 aa, chain - ## HITS:1 COG:Cj0975 KEGG:ns NR:ns ## COG: Cj0975 COG2831 # Protein_GI_number: 15792302 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Hemolysin activation/secretion protein # Organism: Campylobacter jejuni # 34 587 1 574 574 370 42.0 1e-102 MEKLILKNIVLASCLLTGVFGEQNKENAEALEQMIEISPYKNVPQNKNIQNTLKNKQSPL DIKMNKQDSLQKDSKETPNKEGLVAPSNEEFRFKYKFIVDTKEDGKTLTLEDLGINELQL KKAIDSQKKSKLNVETLQEIANIVSYYFQYNGYPSATAYIPQQEITDSIQINILIGKLGE YQVKNYSKHLKKSAISSKLSQSLKGKVLRTKELEDVIYKINEMSGIKASGSLIAGSKYET TDVIITIEDSNKANAMLFFDNYGSKGSGVYRAGVSGALNNLLGYGDSLNYFAQLSDEIQK SYGVTYNAFLGNLKISPRVLRSNYELGGEYENLDAYGNSLDLGVDLSYPLFINTTNSLYL TGGYVYRKLEDIYGSFEVNFNKESNAFYLGTEGTFGLIPNNILSYNTKITYGEVKPRSSF LESSPAMGDFWKFNASLNNSYYFNDSLTQILNLNLQKTLGNYQLDSSETASLGGPYGVRA YPNGFGEADSMILATFGLRANLLNPNFYLTPFYEFAYGWNENYQNNSINMLGRGDKNDVF VDAAGLELLYLMDNRFYVKMDLAKAVHKYVADGKRRDRLYISTGFYF >gi|197325098|gb|DS990368.1| GENE 11 11003 - 14227 3447 1074 aa, chain - ## HITS:1 COG:Cj0737 KEGG:ns NR:ns ## COG: Cj0737 COG3210 # Protein_GI_number: 15792086 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Large exoproteins involved in heme utilization or adhesion # Organism: Campylobacter jejuni # 1 332 46 349 358 144 35.0 1e-33 MNIAGNKTHNVIAWGGGFNIGKDASVNFTTEQKNYLNLDYTNKASQILGKLNGGTNNIYL VNPSGVLIGKDASINANKFGVSTSPMDMTAINNFSTNGSFSPVFKANKGDVVNMGAIKAN EVSLIAKEVGHGGVINADKITLKGNVIANVGNFSDENSNKQFLVGSFNGIDGNNIQSLNL EGDTIKFQIDNTIDKVNTISINASTLAEISQSTTDIKNNGYKLNDSKLSSISAVKLDKFA SIKDTTDWSNFASIINTGNANNIDTFKLINDIDFNNTLIDPVGDDANQFSGNFYGNNHTL SNLLINAEGKFYVGLFGYINNGNVQDLTINGLNFQYNNSNPLYTGGFAGRIDNGAFSNIV LNHIGDISGGSYTGGFGGLIEIGDFSNIILNNIGDISSSGGYAGGFGGDIENGTFSNIVL NNIGDITGNYAGGFAGRIDNGAFSNIVLNHIGDISGNVAGGFGGWIRRGSFSNIVLNDIR NISSSNSSYAGGFAGRIGSASFSDIYFYGALTSGANQNNITQHDSTALDLANGGLTTIQD HMQTDSTLKNLEYVVGTNGNSYLHMVSNGKIGDNDSNIVFNKDDNTYNLEVSNNPTSPTL PSISNGDTLSSVTLDKNDFAVEILQSIIEDILSQDFMFDLNNSSSLETILSGMDLNNLTT ENIQTILEALLDNVNEADKKEVLESMKQSLEFYAEFNQGEKDGLKSLFKSWYQDTKDTYN TSMNKYTYLITKLQEIPSVIEEFKKIQGSIDDYNNKIDSSKKELQEAINAYETLLKDYKE LLASYDSDDSEFKNNFNALYNTFQDNLKAFNTQLADYDAMLKDYNNGSATYNDTLNAYEA LTEKYEALMDSHNSVKKAALAYQDKNNIAKGEYAVLENKINALNEAFNVISNKNYDFTET HTELTTQGDEVKNKYSLGNKTNYEGMSKGGFTFNGTLANLLDSTSNIDIPSQDDKPLLGD IEMPNDLDLAGFDPNSNLSVKLPETPEFKPEPEIPENLPSSDDGAGEVHIDITKLVNVSK ESMPSLGSPVFTLPAQEEIKEEVITQANEIKEGSCIVSGNIKTSNPCSQARDNE >gi|197325098|gb|DS990368.1| GENE 12 14772 - 16850 2464 692 aa, chain - ## HITS:1 COG:Cj0755 KEGG:ns NR:ns ## COG: Cj0755 COG4771 # Protein_GI_number: 15792094 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferrienterochelin and colicins # Organism: Campylobacter jejuni # 22 692 15 696 696 355 35.0 1e-97 MICKKSLGYTSITLSLILSTTNANAAEQYLLDTSVVSASGFSQDIKDAPASISVITKEDL ENRPVQDIADAISDIPGVNITRGKTGTYDFTIRGFGTGYTLVLVDGKRQNTVNGFHENGF SGVDNSYLPPISMIERIEVIKGPASTLYGGDAIGGVVNIITKKNPDKFTGSVSIETQAQQ HYNLYGNSRGVTGYMAFPLIKDELSLALRGKYFGKDPSNLKWPDRSLTNQYASHSPGEYK IGNVGARLNWTINDQNNLYLDAEHYYQYSDTMNTSGRQVRSISSYNRDGVVLNHDGYYTW GTTNTYLQYQYTDQTSKSSTPVANESTVYVAESKATMPFDFNSFGSVMLTTGAQYQWEGF RNDSGTPQTNIYIGQTLEQNIIAPYAEAEYSITENLILTGGLRYTYSDLFEGEFIPRGYL VYHLTNWVTLKGGVAKGYKTPQAKQLGDGVYRVDNGDIHGNSKLSPETSTNYEIGAIFDV WDYGNLSVTAFQTDFKNSIDQDPYANGELMPNGQICAGGTDGCQLIVNRGKDRARGVEVG MDTATWNGFSANLSYTYMEKYDRSGDYKNPWGGSRYTNLPRHIAVVKLNYTQGKFSSFLK ATGRYDTLAQSKGGGASAIPGLMKYEDFYILDLGISYKMTKNSTINFVINNLLDKDFFEP YRYESSRGISYANRYQDYTEGRNFWVNYKLDF >gi|197325098|gb|DS990368.1| GENE 13 17062 - 17646 285 194 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145634802|ref|ZP_01790510.1| 50S ribosomal protein L14 [Haemophilus influenzae PittAA] # 48 191 115 254 261 114 40 9e-24 MRENAKQALLEALAEYDNSKEYEHYRDQEEVIVDIFSQYPSNNDKKSVLLKVCVLDSFYS TNLKIYGIHEVVEQILNLNIDKALKVGDTGVIEKIANFTNSKGKQAFLYSFASKYCFHHN KDKYVIFDSFVQKSLIHFNNKDKFCSFKLSQNSLKNYENLLKAIKEIRTFYGLEEFNNRQ MDHMLWVYGKENLK >gi|197325098|gb|DS990368.1| GENE 14 17656 - 17799 143 47 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417648|ref|ZP_03655654.1| ## NR: gi|224417648|ref|ZP_03655654.1| hypothetical protein HcanM9_00075 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0347 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0347 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 47 1 47 47 79 100.0 6e-14 MKKINFKMALGALSLVVFLGGCGEKPILEIKGNQLELTISDKEAIID >gi|197325098|gb|DS990368.1| GENE 15 17915 - 18166 299 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313141195|ref|ZP_07803388.1| ## NR: gi|313141195|ref|ZP_07803388.1| predicted protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 83 7 89 89 130 100.0 4e-29 MSKQAIAKEAGLGKEFPEFFYNQKDFEAESEKIQSFYDAVFPKTIHQNQKVRFMTNCKEI KQVELITNDDNFSYNLKEKNEKN >gi|197325098|gb|DS990368.1| GENE 16 18153 - 18584 479 143 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313141196|ref|ZP_07803389.1| ## NR: gi|313141196|ref|ZP_07803389.1| predicted protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 143 13 155 155 276 100.0 4e-73 MKKINFKIALGALALVTFLSGCGEKNPDEYLALELTYESYENISQPTLKIQAKNDIVINS VSVNRGNCKIALTGEMSMLLGYGNMLGIALVDSLLPKFTLEKDLPKEMAFSEEIKLPIGC SMDSVLETTINTNQGVWTWTWSK >gi|197325098|gb|DS990368.1| GENE 17 19266 - 20105 665 279 aa, chain - ## HITS:1 COG:no KEGG:HH0827 NR:ns ## KEGG: HH0827 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 270 1 275 284 86 26.0 1e-15 MRKITLQNTLFSSLFFILTIFTLLTLLLSGIVWDFRQMFRLVTQPYGVYYCVGITFLACG IIISLFHIARIYSSHLPKFYSATILIALCLFVWLLYYEFFELKRFTYDIFSLEDSLKFTK EDIFKKNSYQLYLDYGIYCFFIIFPFVVYFFQLNFDKSTKIGRILQLTQPNLNTIIIALF GFTVTPFFKNGVLGYIDLVLMLAGLAMVMFLCWKRKYLVGSYEFFNLLLLWIVCLIMLFI SHTFVDGESYFEVRKAFYFLMLFGWCNNWMTKLTTKIPA >gi|197325098|gb|DS990368.1| GENE 18 20114 - 21199 1139 361 aa, chain - ## HITS:1 COG:Cj1269c_2 KEGG:ns NR:ns ## COG: Cj1269c_2 COG0860 # Protein_GI_number: 15792593 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Campylobacter jejuni # 54 360 14 328 329 278 51.0 9e-75 MLKIIILFFCFFHFVWGNNLEIHSIKQTANGITLGFNQTIEKKDFKSFVLESKEGLRYVY DIPAVLMGKAKLLKFEGEISLRIAQNSPTKVRLVIQSPKKLTISLNTSQKQAHFSFLKTI SISSLFENNTQQETLQKNNKIIVIDPGHGGKDCGAIGVNKTCEKIIVLNIGKYLRDVLQA RGYKVYMTRSSDKFIKLRERTSFANDKEADLFISIHANAIVDNKNSLEGVESYFLSTARS EKAKNVAALENKDDIESMNYFSKQSVLNTLNTQRIIASNRLAIDIQYGMLQSLRKNYKIV DGGVREGPFWVLVGALMPSVLLEVGYITHPTEGKRLAQTAFQKNIAKGIADGIDNYFIKN P >gi|197325098|gb|DS990368.1| GENE 19 21193 - 22290 1195 365 aa, chain - ## HITS:1 COG:HP0773 KEGG:ns NR:ns ## COG: HP0773 COG2070 # Protein_GI_number: 15645392 # Func_class: R General function prediction only # Function: Dioxygenases related to 2-nitropropane dioxygenase # Organism: Helicobacter pylori 26695 # 7 364 5 362 363 568 74.0 1e-162 MLSKLQLKPLKIGKYTIPFPIIQGGMGVGISWDNLAGNVSKYGALGVISCVGSGYYKKSA FVQKVIKHRPFDTINFYSKESLFEIFKNARKICGNNPLGANVLYAINEYGRVVRDACEAG ANMIITGAGLPTNMPEFTSNFPNVALIPIVSSAKALKILCKRWEGRYKKIPDAVIVEGPL SGGHQGVSYEDCFKPEYQLESIVPEVLEESKKWGEIPIIAAGGIWDRNDIDKIMALGASG VQMGTRFLGSEECDALYYRELMPKIKKEDIELIKSPVGYPARAIVTGVIKGLREGRKPKI ACISNCVSPCNRGQEAKKVGYCIADGLGDGYLGDPINGLYFTGANGYRIEKIQSVKEILD ELTQC >gi|197325098|gb|DS990368.1| GENE 20 22302 - 23516 317 404 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 46 401 42 414 418 126 29 2e-27 MSVESQVKTALAEIQRGTQEIIGLEYIEKLIRDYFENGKTFKVKAGFDPTAPDLHLGHTV LLQKLATFQKYGGIVCFLIGDFTGMIGDPTGKSETRKPLNKEQVLANAKTYEEQVYKVLD SSKMEIAFNSKWLDNLGTRGMIELAAKFSVARMLERDDFEKRFKNQNPISIVEFFYPLLQ GYDSVALECDIECGGTDQKFNLLMGRHLQRAYGIPKEQSVVMVPLLEGLDGVHKMSKSLG NYVGITQEPKEMFGRLLSISDTLMWRYYELLSSKSLAEIQEIKESVEKGNLHPKTAKENL ALEIITRYYDAQKAKEAKEEFDKVFSKDEMPSQMPTFEKNSGIWIAQLMSECGLCVSNSE ALRLIKQGGVKVNGQKLEDSKLNLQIGEYVIQAGKRKFARVIIK >gi|197325098|gb|DS990368.1| GENE 21 23526 - 24644 1167 372 aa, chain - ## HITS:1 COG:Cj1272c KEGG:ns NR:ns ## COG: Cj1272c COG0317 # Protein_GI_number: 15792596 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Campylobacter jejuni # 1 370 354 728 731 293 42.0 4e-79 MHRSAEYGIAAHWIYKTGGNSGPSLDWLNKLQFQNNSVEEFYELVKNDLYREDIVVFSPD GDNYSLPIGAVALDFAYAVHTDIGNRAKEAYVNNQKTSLLTALKSGDIVKIITAKETILR CSWMDAVKTSRAKNQIRINCASRIKEIEKKSAINIIATIFDKSAEEIEGFVKESGLDESI HKATTDIAFLKDIKNRIKNYYTQKAGFLTQIKIRILKLRELHFDNLVIQTNHTLNQAVFD YCCHPKFGDGIIAFKNGSKAFVHHKLCDRAYLEIQKGVKMLYVNWLGDRLQTYKLIVALE NQKGVLANFLQFLAKCDINVLGVELGSQKSTYATHCEVRFESHIADVKELKTLFGNHYKI IDVYALKDAYAN >gi|197325098|gb|DS990368.1| GENE 22 25013 - 26032 1075 339 aa, chain - ## HITS:1 COG:HP0775 KEGG:ns NR:ns ## COG: HP0775 COG0317 # Protein_GI_number: 15645394 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Helicobacter pylori 26695 # 1 337 13 350 775 429 61.0 1e-120 MEFLKKVTTITTPQKAIELLYGMLEVTPSIERAIAFATEAHKNQKRRSGEPYIVHPLLVS CIVAHFGGDEVMVCAALLHDVVEDTDYTLEDVKKNYGEDVASLVDGLTKIVAIRAEELPA SHSNEKLVVAALSFRKMLITSVKDVRVLVVKLCDRLHNMLTLGALPPNKQRRISEETLVV YAPIAHRLGISTLKNELEDRSFYYIFPEEYRKIQDYFLNHKQAIQLKLNAFMQKVKKSLI QSGVPEGDFILQSRVKRHYSIYLKMQRKGISIEEVLDLLAIRVIVKNELDCYKVLGILHL KFKPIMSRFKDYIALPKENGYQTIHSTLFDDSAIFEVPS >gi|197325098|gb|DS990368.1| GENE 23 26070 - 26288 382 72 aa, chain - ## HITS:1 COG:jhp0713 KEGG:ns NR:ns ## COG: jhp0713 COG1758 # Protein_GI_number: 15611780 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Helicobacter pylori J99 # 2 69 5 72 74 65 51.0 3e-11 MRIEQIASKALEKVNFDRYLLSNIIFARIDELSRGAKPLVNKNPKVDKLSDIALLEIAEG KIGLERVEEAQK >gi|197325098|gb|DS990368.1| GENE 24 26302 - 27015 1191 237 aa, chain - ## HITS:1 COG:HP0777 KEGG:ns NR:ns ## COG: HP0777 COG0528 # Protein_GI_number: 15645396 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Helicobacter pylori 26695 # 3 228 8 233 240 293 73.0 2e-79 MAKRVLVKFSGEALAGESGFGIESGILDYIAMELKTLVNSGIQVGIVIGGGNFIRGVSAS QGGIIRRTSGDHMGMLATIINGVAMQEALEYHGINVRVQSALEIKEVCETYINRRAMRHL EKGRVVIFVAGTGNPFFTTDTAATLRAVEIEAEVIIKATKVDGVYDKDPAKYADATMLKH ISYEQALKDNIKVMDDTAIALAKDNALPIVVCNMFKKGNLLAILKQEENAIYSKVSN >gi|197325098|gb|DS990368.1| GENE 25 27097 - 27528 273 143 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224417659|ref|ZP_03655665.1| ## NR: gi|224417659|ref|ZP_03655665.1| hypothetical protein HcanM9_00132 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 143 1 143 143 211 100.0 2e-53 MGFKLKMRHWIIALSLILFCGCDKGDSKKDNPSENNSPKVTPKKLEDSTDKEDDNHTKNP IKGKLKKHLEELNLQLQQKSLNNLQFNQGTKEHIRHFESLYNRQDLPKQRDSTQQNPNEI LEKAYEIQNQQLKKLQQKNDEIW >gi|197325098|gb|DS990368.1| GENE 26 27622 - 29058 425 478 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225093729|ref|YP_002662469.1| ribosomal protein S15 [gamma proteobacterium HTCC5015] # 2 478 6 494 497 168 28 5e-40 MRHLYFDTRELDNRAREEFFLSSEVLMENAARGMAEFLAQKFPLGSKILMVCGSGDNGGD CLALARMLVGKYNLKIFLPLGVKSTLSQIQLKRLEACDSLVFLSNLEGVDLSSFDVIVDG LFGIGFRGEFSLQMQNLITQLNETRAIKIACDIPSGIDLYGNPRFLGAIPFAFRADFTLT MGALKNALFSDYAKDFVGEVYCLELGISESVFVPNSNFKLLESSDFKAPKRDLQNCNKGS FGHLSVLGGEKSGASLLSALAGLRIGVGLVSLVSRAAPSNLPYEIMYANFIPKNTTAIAL GMGFGRENTFSLESLNNFLDLPILLDADIFYHKVFKDLIQNFSKVILTPHPKEFSVILEV LENKEMAVDEIQKNRIALAQEFSSKYPNTTLILKGANSLIAKNGEVYINPLGSNALAKGG SGDVLAGIVAGLLAQNYSSLEACIQGVLAHSLCAQKFTQKNADFSLSPLDLITQIRYL >gi|197325098|gb|DS990368.1| GENE 27 29086 - 29865 1208 259 aa, chain + ## HITS:1 COG:aq_2178 KEGG:ns NR:ns ## COG: aq_2178 COG2022 # Protein_GI_number: 15607113 # Func_class: H Coenzyme transport and metabolism # Function: Uncharacterized enzyme of thiazole biosynthesis # Organism: Aquifex aeolicus # 2 256 10 263 267 298 61.0 1e-80 MNDSLIIGNKTFESRLIVGSGKYKDFKTTYEATLASKAEMITVAVRRVNITNPNEENLLD YFKDSSVQFLPNSAGCVNANEAITLFRLTKAATGIDFIKLEIIGDTQKTLYPDVLETLKA CEVLAKEGFVVLAYSNDDPVMAKHLENAGASAVMPLAAPIGSGLGIQNRYNIAFIKSAIK IPVIVDAGVGCASDAAIAMELGADGVLTNTAIAQAKNPILMAEAMCEAVKAGRKSYLAGR IPKKPYATASSPTEGLLEF >gi|197325098|gb|DS990368.1| GENE 28 29875 - 30486 447 203 aa, chain + ## HITS:1 COG:no KEGG:HP0951 NR:ns ## KEGG: HP0951 # Name: not_defined # Def: putative recombination protein RecO # Organism: H.pylori # Pathway: not_defined # 1 203 2 205 205 184 46.0 2e-45 MQGFILHTQRVRDEDLIVRILSCTHLYTLYRFYGARHSIIHLGNKIDFVIEQDLREIGKL REPIHLAFQWECESNKRYYWQQYLKLLNQHLRDVNRLDSFYFDHLQKGAKYLQKEEPKRC ILNLYARLLDFEGRKNPLSSCLVCERELEEEIVLGRGVVCGHKGCLQGEVFNKVHIKQWL DSRGEFLEDEEVEKLWNLLKLGL >gi|197325098|gb|DS990368.1| GENE 29 30499 - 30912 457 137 aa, chain + ## HITS:1 COG:Cj1449c KEGG:ns NR:ns ## COG: Cj1449c COG3787 # Protein_GI_number: 15792766 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 1 136 1 135 135 114 48.0 3e-26 MDQKILNFIAKNHLLTFSVRDEDEGVYIANCYYALDEKDYCLLIKSALDSKHIKLATQNP HIGISITKDSKKLILIKGVQIKALFKQATNEQKSLYYSQFPFAKLASGEIFALELLWIKY TDNGLLLSEKLIYQKEK >gi|197325098|gb|DS990368.1| GENE 30 31102 - 31704 444 200 aa, chain - ## HITS:1 COG:jhp0770 KEGG:ns NR:ns ## COG: jhp0770 COG0237 # Protein_GI_number: 15611837 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Helicobacter pylori J99 # 1 193 1 196 196 160 44.0 2e-39 MSFKYAIVLTGGIGSGKSTIASFLKLYGYEVVCADSIAHTILDQSTKEVVEIFGKEILEN NRINRKRLGEIVFNDKKKKEILEKILHPKIKEEILKQAKALETKKIPYFLDIPLFYETKN YPFKEVLLVFVPREIQIQRIQKRDHLELQAIQARISSQIPLEEKKQLASYVIDNSGDLEN LQKEVEKYLQDYLPKVLEEN >gi|197325098|gb|DS990368.1| GENE 31 31701 - 32504 683 267 aa, chain - ## HITS:1 COG:jhp0771 KEGG:ns NR:ns ## COG: jhp0771 COG0421 # Protein_GI_number: 15611838 # Func_class: E Amino acid transport and metabolism # Function: Spermidine synthase # Organism: Helicobacter pylori J99 # 1 267 1 262 262 157 34.0 2e-38 MWITKNYNEKFQQEYKIESKLLEASGIKHHLEIFNSQAFENIALIDDKILLKTMLPLQSE LLAHISACSHKNPKKILIAGSFNLEIAFEFLRHSDLKVDFLQFDLKILESLISFFPHYQS VMQDKRFTLIPQQKEEFLQQNQTKTNFYDIIILENKTDFKAYESLLGEDGILVTKSPHLI LETTEVKKQLELLDESFRVKMPFYIPMSLDIQDFYLFASKRFHPTADIMLQRADMLENLE YYHANLHLAAFVIPKEMRNTLFGAIRN >gi|197325098|gb|DS990368.1| GENE 32 32563 - 33012 556 149 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224417666|ref|ZP_03655672.1| ## NR: gi|224417666|ref|ZP_03655672.1| hypothetical protein HcanM9_00167 [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 149 1 149 149 283 100.0 3e-75 MKQIILGTILGIAMLLAGCSSKNPNTKEMAQDSIHQTLQSKQEWKIHSFKLNNATEILTF EKEYPFFIGFKEKGVFGTFGCNNFFGSYDLNNDKLKISNTGMTRKMCEPRIMELESKLTE NALNNENRVEVLNDGKILIFRNDFYLLIQ >gi|197325098|gb|DS990368.1| GENE 33 33023 - 33871 924 282 aa, chain - ## HITS:1 COG:HP0659 KEGG:ns NR:ns ## COG: HP0659 COG0760 # Protein_GI_number: 15645283 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Helicobacter pylori 26695 # 24 280 158 413 414 133 31.0 3e-31 MKKYLLTSLLSFVVISHAFGAPSLVNGIAFFVNGNPVTLLDVYKVQQRDKVEQNLAVDIL INEKLHEEEIKKHKIVATELELNDEISAIARQNQTTPEQLESYIRTNGGNWENYKEEIKK RILKRKLYQIISQESLKMVDENQLRSYYDTHKEEFSIPQSIDVTKFFSKEGAALETLIKS GGKDIPKGIGQENEVLQTTALNPQIVSAFTQGKIGSFTPIYPIGEDFVTFLIKAKNNPTL APFENVRDIVLQKIMSQKEDYLIYEYFEKLRSNAKVSIIRLN >gi|197325098|gb|DS990368.1| GENE 34 33925 - 35229 1093 434 aa, chain - ## HITS:1 COG:Cj0980 KEGG:ns NR:ns ## COG: Cj0980 COG2195 # Protein_GI_number: 15792307 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Campylobacter jejuni # 8 431 5 421 422 270 38.0 3e-72 MKENFEPLELFLEICKIPHPSKNCSKLKEWIITKAKENGATTKEDKAGNLLCTKGNPRIC LQGHYDMVYVGESKDFKVQPKFLDSKWLSALDSSLGADNGAALACMILALRDFDNIECLF TSDEEVGMIGANHLELEIHSPYIVNCDSEDIDEVIYSCAGGYDLEAKKGFEILAIPQDYK CFEIKTQNFKGGHSGIEIHKNIPNAILELAKIARDLEGIIIEFWGGEKRNSIPVNATLKI ALKDSQAIQLKSLSENFIITPLKQAKYGYACKDLLTAILGLKNGVIKAKDDSLLLSSNLG ILKQNNENFTFYAMGRGNQEELMQENIALNQTFLKSLNFEVNILDYYAPWLEEGGKLLKL VWEIYQKHNKNAKLKSIHAGLECGILKSKFPKVEFVSIGPTILHPHSLNEKLDLESFKKF WIILQEILQKNHNF >gi|197325098|gb|DS990368.1| GENE 35 35239 - 35880 338 213 aa, chain - ## HITS:1 COG:HP0602 KEGG:ns NR:ns ## COG: HP0602 COG2231 # Protein_GI_number: 15645227 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein related to Endonuclease III # Organism: Helicobacter pylori 26695 # 5 209 3 212 218 179 43.0 3e-45 MQIQNSFDLFCLLKNLGYLKNPPHNLWWPNAGRFEVIIGAILVQNTRWESAFNAINRLRT KDLLSLESLANIPLTTLQNLINDVGFFRQKSQRILWLCQNILVEFGDFESFCENVSREWL LSQKGIGNETCDAILCYGALREEMVADQYTYKLLKSYGYELENYDDIKEWLVSGIIENYE KICKLYGYPIPLNVLYARFHGKIVEYCKENKFK >gi|197325098|gb|DS990368.1| GENE 36 35864 - 35980 118 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTEFLLIMWPVVIYIAYKFVWLNISHIEKSKESSANPK >gi|197325098|gb|DS990368.1| GENE 37 35991 - 37115 1076 374 aa, chain - ## HITS:1 COG:Cj0082 KEGG:ns NR:ns ## COG: Cj0082 COG1294 # Protein_GI_number: 15791472 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Campylobacter jejuni # 1 374 1 374 374 444 70.0 1e-124 MFFGLELLGLQIYWWGILSLLGGLLVFMFFVQGGQGMLFELTKNEEEKALIINSLGRKWE LGFTTLVLFGGASFAAFPLFYSTSFGGAYWVWLIILFCFIIQAVSYEYRKKEGNLLGSKT YEVFLFINGILGVFLIGVALSTFFSGANFSLDSSNFVTWQNPAKGLEALLNPWNFLLGFA LVFLSRILACGYFLNNIDDETLKPRFQKKILPNSVAFLVFFLAFLFWIFTKEGFALLPNG DIGLQKYLYLQNFLDFPFLIGILLVGVVFVLFGMLMTYKGCKKGIFALGIGSVLAVFAIL LSIGIGKSAFYPSLVDLQSSLTIQNASSSYYTLSVMGYVSLLVPFVLAYIIYVWNLMDKV KITKEELRKDSHQY >gi|197325098|gb|DS990368.1| GENE 38 37125 - 38666 1602 513 aa, chain - ## HITS:1 COG:Cj0081 KEGG:ns NR:ns ## COG: Cj0081 COG1271 # Protein_GI_number: 15791471 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Campylobacter jejuni # 6 511 1 505 520 745 74.0 0 MEQELLQRAASVDWSRAQFALTALYHFLFVPLTLGLSFILAIMESIYVKTKNEEWKKITQ FWLGIFAVNFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAIEGIMAFFLEATFFAV MFFGWNKVSPKFHLLSTWLVAIGSNLSAFWILVANGWMQYPIGTTFNLESARNEMTNFFE VALSPVAISKFLHTISSGYVISALLVMGISAWFLLKGRDVIAAKKSLIVGASFGLITSIF LFVSGDESAYQVTQKQPMKLAAMEGIYEGEHRAGLVAFGILNPNKQIGDDQNTFLFNITI PYALSILGNRSRNSFVPGINDLVYGNAEKNIMSIEEKIQKGHLALEAFREYKKGRESGIA ANDLGQYSQIVKENMPYFGYGYLKDAKEAVPPIALTFYTFHLMVALGSWFFVLFIVVLYL AMANEITKFRKILWIALWTIPLGYIAAECGWIVAEVGRQPWAIQDLMPVGVAATHLSSVN VQISFFIFLVLFTALLIAEIGIILRQIKKGFAH >gi|197325098|gb|DS990368.1| GENE 39 38676 - 38885 173 69 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309391|ref|ZP_04808546.1| ## NR: gi|242309391|ref|ZP_04808546.1| predicted protein [Helicobacter pullorum MIT 98-5489] predicted protein [Helicobacter pullorum MIT 98-5489] # 1 69 1 69 69 85 75.0 2e-15 MQFLSRIFYLYYDGFRNMTLGRSLWLVIILKLLIIFGFLKIFIYDKSLKTNFQTQEEKSK FVSKNLTEF >gi|197325098|gb|DS990368.1| GENE 40 39044 - 40081 1455 345 aa, chain + ## HITS:1 COG:HP0153 KEGG:ns NR:ns ## COG: HP0153 COG0468 # Protein_GI_number: 15644782 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Helicobacter pylori 26695 # 1 345 1 345 347 543 82.0 1e-154 MALDENKQKAIELAIKQIDKAFGKGALIRLGDKPVEKIDAISTGSLGLDIALGIGGIPKG RIIEIYGPESSGKTTLALQVVAECQKKGGICAFIDAEHALDVTYAKRLGVDVENLLVSQP DFGEQALEILETLTRSGGVDLIIIDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKVT GVIHKMNTTVIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRIDVRRIATLKQGEQNI GNRVKAKVVKNKVAPPFRGAEFDIMFGEGISKEGELIDYGVKLDIVDKSGAWFSYEDKKL GQGKENAKIFLKENPEIAQEIEEKIKASISVTDDLSADDDENLEE >gi|197325098|gb|DS990368.1| GENE 41 40092 - 41366 1823 424 aa, chain + ## HITS:1 COG:HP0154 KEGG:ns NR:ns ## COG: HP0154 COG0148 # Protein_GI_number: 15644783 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Helicobacter pylori 26695 # 1 423 1 424 426 590 69.0 1e-168 MVYIDEIQAQEVLDSRGNPTIQASVLLSDGSVGSAIVPSGASTGKREALELRDGDERFLG KGVLKACENVQTSIADTLCGMSPFDQSDIDKTLIELDGTENFSKLGANATLGVSMAVARA AAKSLNIPLYRYLGGANALVLPVPMLNIINGGSHADNTVDFQEYMIMPVGFDTFGEAMRA SAEIYQYLKKILKDSKHITSIGDEGGFAPNLKTNEEPIQVILEAVKKAGYKEGDQIAIAL DVASSEFVNEKGIYCLKGEGRELSSEELIEYYEKLIAKYPIVSIEDGLSEDDWSGWEKLT QKLGNKIQLVGDDLFVTNAKILAQGIKQNVANAVLIKPNQIGTVSQTMETVRLAQRNNYR CIMSHRSGESEDSFIADFAVALNTGEIKTGSTARSERMAKYNRLLAIENELAYPEYLGKS LFRK >gi|197325098|gb|DS990368.1| GENE 42 41369 - 41620 284 83 aa, chain + ## HITS:1 COG:no KEGG:WS1495 NR:ns ## KEGG: WS1495 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 9 82 14 87 87 77 56.0 1e-13 MDEEDFGYQKGGFYKLLPFLSLLLVICIAGVYFGNLLFGNNSLKVLLELREKERQMSQEV KHLMDENAKFQKEFFELKGLEPQ >gi|197325098|gb|DS990368.1| GENE 43 41617 - 42324 700 235 aa, chain + ## HITS:1 COG:no KEGG:WS1496 NR:ns ## KEGG: WS1496 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 52 232 16 205 208 164 47.0 3e-39 MKILSVLFIFVLSVFANEPKALPKIPELNIQAPIEVQKVQSVSENNSTKVTRNPFESVMT PKESGQISNPPKLDLFTQTALNLPSTARKIKKITLSYQNLDGSISVIEKELDGDIDWHFP LVLSQEVQANATLPTMSDFNFHKLFDFHIKDKKITLKTPLQLIRDFTLASPTRLILDFKN NSKQSLKDSMTTHLPVVNKVELQTHLDFYRITLNLDGQYKYSLQNTKEGLEIAFY >gi|197325098|gb|DS990368.1| GENE 44 42311 - 42811 392 166 aa, chain + ## HITS:1 COG:Cj0387 KEGG:ns NR:ns ## COG: Cj0387 COG0703 # Protein_GI_number: 15791754 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Campylobacter jejuni # 1 159 2 160 165 108 40.0 3e-24 MHSTNLVLIGFMGSGKSSVAKALYQHTRSLILDSDLMIENNENMTIPEIFSQKGEQYFRD LERAFCLFVSQNIRHCIISTGGGMPMFCDVKQMGKVFFLDLSFEDILLRLSKEERLKRPL FKNQKAALELYQKRYQVYKDSAHFCINANRSIPEITQEILDCLPMK >gi|197325098|gb|DS990368.1| GENE 45 42857 - 43873 828 338 aa, chain + ## HITS:1 COG:HP1191 KEGG:ns NR:ns ## COG: HP1191 COG0859 # Protein_GI_number: 15645805 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Helicobacter pylori 26695 # 1 337 9 346 349 242 40.0 6e-64 MNILVRLPNWLGDAVMATFALEILYRTYPNAHFYFVGSKVSCALFSHYSNITTIIDNSKQ AKFRILALYRLAKAIPPCEIALTFQNNFFSALFLFFNRAKKRIGYANELRSLLLNIALKK PKKLHESLRFAKLVEAIIPNHCVEPKLYLKPPKISITLPMHFNHLKIAGINAGAAFGSAK RWEEQYFAAVIEDLLKHDFCVILFGVESENPINEKILSYLKQSNKILNLSGKTNLQELMA YFSKLHILITNDSGPMHIAAALNIPTIALFGPTNQEETCPFNAEHSYILSLQTFHKALSC QPCKKRSCPISQDSATYHACMRELKPQWVIEKIHSLIS >gi|197325098|gb|DS990368.1| GENE 46 43916 - 44776 995 286 aa, chain + ## HITS:1 COG:Cj1674 KEGG:ns NR:ns ## COG: Cj1674 COG2107 # Protein_GI_number: 15792978 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Campylobacter jejuni # 1 285 1 285 286 379 64.0 1e-105 MRTIQIGHSPDADDLFMYYAIAFGWVGNTIAFENQALDIQTLNEMALGGVLDISAISFGV YPFLAQEQALLRTGVSFGEGYGPKLIKKKGKTLKKNFKVALSGKHTTNAMIFKIAYPQAR IYYKNFLEIEKAVLEDEVDAGVLIHESILQYDSNLEVECEIWDIWNDLNRQNLPLPLGGM CIRRSLPLSVAIECEEILTQAVRVALKNKSLLSKMLLERNLVRVDSKKLEHYLNLYANED SVSLSDKQLKAINMLFKLGFDYKLCPQILDVNDCLIPREYKDFRNQ >gi|197325098|gb|DS990368.1| GENE 47 44770 - 45585 839 271 aa, chain - ## HITS:1 COG:jhp0529 KEGG:ns NR:ns ## COG: jhp0529 COG0810 # Protein_GI_number: 15611596 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein TonB, links inner and outer membranes # Organism: Helicobacter pylori J99 # 157 268 201 312 317 129 58.0 7e-30 MKNNLIAFFLSLLIHFIILLLIFIKLPQDDAYKPPKHGSKEGERISIKNFKFSPPTQNFT QNPPNPMQTQESSASVAKEEPKITKNDKPTPKLETQNKESKPKTTKDSKTKQPTPKPTPQ KEAQKTSKSTPNPLASSLKSNPTSKLSSPSIYDYGKNMANQEIKELYGEDLYSLNYEERK FIEDNLSSIGKITQQYLKYPQIAGQMGQQGDNIVEFYLHPNGDISDLKLLTPSGFRLLDD NSLHTIEIAYKDYPYPAVKTKIRIRVMYRIY >gi|197325098|gb|DS990368.1| GENE 48 45586 - 46026 165 146 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224417682|ref|ZP_03655688.1| ## NR: gi|224417682|ref|ZP_03655688.1| hypothetical protein HcanM9_00247 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0379 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0379 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 146 1 146 146 242 100.0 5e-63 MKILFWILFCVAISIAQDKIESTKILEESSKAFPFEMAKSPLESINLFQYSGVILILVGL LVLLWYVRKRVYYKDSNNNFLDFFKKNPKDFPITILSNTPLSLNTKLVVFELYKMRYIVI LNQNGATLVDKYPLEDFGELLKQEKH >gi|197325098|gb|DS990368.1| GENE 49 46023 - 46382 608 119 aa, chain - ## HITS:1 COG:HP0584 KEGG:ns NR:ns ## COG: HP0584 COG1886 # Protein_GI_number: 15645209 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar motor switch/type III secretory pathway protein # Organism: Helicobacter pylori 26695 # 15 115 23 123 123 139 66.0 2e-33 MPADEFTLAKIQAPKQEDLARYLEGIMNNYGGLLDMKVAFHAELGSAKIPLLEILRFEKG SIIDLQKPAGESVEIYINGRIVGKGEVMVYEKNLAIRVNEILDSNAIIYYLTRESISAV >gi|197325098|gb|DS990368.1| GENE 50 46401 - 46817 551 138 aa, chain - ## HITS:1 COG:no KEGG:WS1059 NR:ns ## KEGG: WS1059 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 4 136 3 134 139 87 37.0 1e-16 MLDKIIKNAFKQAIEDTLGKTPQVLDEKILEGFLSGIDIVYNDGDKNTITFISTREFLEK FGNGLLGEEDFDELALKDLSQELANLTIGLAKVLAVTEGVRFNISTPKVYGFGEFKDSSS KSLNFALEGARCSLFIHI >gi|197325098|gb|DS990368.1| GENE 51 46898 - 47674 708 258 aa, chain - ## HITS:1 COG:Cj1222c KEGG:ns NR:ns ## COG: Cj1222c COG0642 # Protein_GI_number: 15792546 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Campylobacter jejuni # 24 258 164 396 396 237 51.0 1e-62 MIIQDNGILNEIHTLWLFIGGSFLLALFGMSVIAYFLVRLSLKPLEEKIEILNRFIKDST HEINTPLSIILMSIERIKKENLKEQDLQKLQRIKMAANTLEQIYQDLVFYNFSHIQENTL EEISMENLLKERISYFEPFYKKKNITITLKSNPSQLKANKNRIIRVIDNLLDNALKYTYN GGKVEVIVDKNTLTIKDNGCGIPKTHLKRIFERYYRYNKDQGGFGIGLALVKKICDSYGI EIQCQSLEKKGTTFILKW >gi|197325098|gb|DS990368.1| GENE 52 47723 - 48211 347 162 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253827035|ref|ZP_04869920.1| ## NR: gi|253827035|ref|ZP_04869920.1| sensor histidine kinase [Helicobacter canadensis MIT 98-5491] sensor histidine kinase [Helicobacter canadensis MIT 98-5491] # 1 162 1 162 429 285 99.0 6e-76 MNESRKIALKISLLYTITSFIFLIFVFYGWYQKEKQSLIEERILQLRESAHNLAIYLQEK LQTSPDNLFELLQKSAKELDITFSLNKENGEVIFNALKESIQIKDFQNILKRKGIPISFK KNHKHIDKIVIIEDNVYLVTQRVGGRFWRLVNLELRKKNLLS >gi|197325098|gb|DS990368.1| GENE 53 48208 - 48876 710 222 aa, chain - ## HITS:1 COG:Cj1223c KEGG:ns NR:ns ## COG: Cj1223c COG0745 # Protein_GI_number: 15792547 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Campylobacter jejuni # 1 217 1 220 221 194 55.0 1e-49 MKAKILLLEDDMALQEIIAECLIEEGYEVVCCNDGVEASYKAYEENFDCLLLDVMVPNMN GFETLKNIRESGKQTPAIFITALNSIKDLEVGFKSGCDDYLRKPFELSELLLRLEALLKR SNRVNLYDFENGYSFDCKEGILYLEGKPYRLSNKERELLKILLINENHFVPLEEIFNTLW SYGEEPSELSLRVYIKNLRQIVGKDNILTRRGEGYCYRKSIE >gi|197325098|gb|DS990368.1| GENE 54 48916 - 49362 536 148 aa, chain - ## HITS:1 COG:no KEGG:WS0076 NR:ns ## KEGG: WS0076 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 4 116 2 114 158 90 42.0 2e-17 MKAKTIISFLVGTALSASVALAADFSKKSNDELINLSGKVTPKDYPDYKMEIHKRTQGMT LQEARNFREQLRDKRQSVYDQMTLKEYREYRDAIAKETAKRIDSMSEKEAYESGLLRKHH KNKNKGYRGQNRGDCPNKGKDCPVGPRP >gi|197325098|gb|DS990368.1| GENE 55 49425 - 50708 1194 427 aa, chain - ## HITS:1 COG:HP0714 KEGG:ns NR:ns ## COG: HP0714 COG1508 # Protein_GI_number: 15645336 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog # Organism: Helicobacter pylori 26695 # 12 425 11 412 414 369 50.0 1e-102 MKLRTQTSATLKTKLSSTLKSWLPILQSSTLELEETLGEFAKENPYVEVKSGMTTDFSSE RKKRKEGPRGLRSAENDGIEKFCIQEESLEEVLKSQIVPPLFPTKTSQAIAEKIIENLNE EGYFDGDKEKIAKECQSNSLEVEKIRKRFAYLDPAGIAAENLIESFYFQLENMDIADSVY SVCLKLIGDLENHTKYKEDKNYTQAMRVISSFKNPPALDFYQKEAAIIPDILVIQESNNI QVQINEKYYPSIEIETQKKDSKEKIKDEFIKNKIKDARDLVDALEMRKATLYKIGLMIVE YQYDFFMGGEIKPMKLKDLAEEFGHAPSTISRAISNKFLECARGIFPLRNFFATALDEDT ANTTIKEFVSELIKNENKQKPLSDNRILELIEQKFNLKIVRRTITKYRAQLNIASSSERK KLYKMSL >gi|197325098|gb|DS990368.1| GENE 56 50705 - 51427 268 240 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 19 217 25 221 309 107 34 9e-22 MHKLEAKNLVKIIKKNKIISDISIEVRSGEVVGLLGPNGAGKTTSFYIICGLLLPSSGKV FFDNKDITALSLHKRSQLGIGYLPQESSVFKDLSVEENLMIAAEICLDNEEERYKRTEEL LEEFNIEPIRNRKGVNLSGGERRRVEIARALVKKPKFILLDEPFAGVDPIAVLDIQNIIK KLLKFGIGVLITDHNVRETLSVCHRAYVINKGMLLASGNSNEIYENELVRRHYLGDHFRV >gi|197325098|gb|DS990368.1| GENE 57 51420 - 51827 417 135 aa, chain - ## HITS:1 COG:jhp0654 KEGG:ns NR:ns ## COG: jhp0654 COG0802 # Protein_GI_number: 15611721 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Helicobacter pylori J99 # 6 133 5 130 133 104 46.0 4e-23 MKSLMLDENSLHQLCEALDLKNQRGIYLLKGDLASGKTTLVKAMVQYLGNSSVVSSPTFL LAQDYGEGIYHYDIYQKNLEELLEIGFLEELEKEGWHFVEWGDEKLAKILKQIGMDFKKI EILSKQHLREYRIDA >gi|197325098|gb|DS990368.1| GENE 58 51828 - 53588 1697 586 aa, chain - ## HITS:1 COG:Cj1157 KEGG:ns NR:ns ## COG: Cj1157 COG2812 # Protein_GI_number: 15792481 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Campylobacter jejuni # 5 530 3 480 509 412 45.0 1e-114 MEHNEALALKYRPMDFDELVGQESVSRTLSLALESKRLSHAYLFSGLRGSGKTSSARIFA RALQCEKGPKAKPCGVCANCIAANPHKMRHIDIIELDGASSRKIDDIRDLIEQTKYHPNM GRYKIFIIDEVHMLTKEAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHFRFKR ISEKNIFEHLKNILHKENITYQDEALNMLIRSGSGSLRDTLTLLDQVIIYSNYNITADSC ANMLGLINPQSLNMLFEEIFKKDKESLLKHIEGFSEYECEMLLDEMAIFLKEKLLRGEDT RYSATIIDRFFRIITQAKELLSLGSDDSFVLTLSIFKMLEALKIQEIDKAIETLEKGLTL PSKENQTKESKQTFENTPTNPTNTIKENPIKPLEETHTNHFTPTPNGADLFALLVQKIYE RNFELGEIFEKNIHFVSYENGILVWETTAQDSDKERLKNSYTNIIKGFVLEIFGMQTQIK PIAKEPKISQTPLTNTQESIQKQEIQKASDSINTPNTKPQNTNSTESLELNTTLSTPKTT TQSAETQPTHKSIQDEVNEALGLPILQDVRQLLEIKQIKVRPKSEE >gi|197325098|gb|DS990368.1| GENE 59 53652 - 54323 945 223 aa, chain - ## HITS:1 COG:Cj1491c KEGG:ns NR:ns ## COG: Cj1491c COG0745 # Protein_GI_number: 15792806 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Campylobacter jejuni # 11 138 6 132 226 77 37.0 2e-14 MLSKNDEAVMKKIKVLYVEDEEDILKFASIVLEDYVDKLFIAHNGKEALEILKQEDIDLI ITDILMPKLNGIDLIREIKKNPLWDIAVIVATAHTETQYLLDCIELKVDGYILKPIDVEE LLKTILKAVLPKFQANELRAKNVLLNAISVFVGGKKIEIIKYLIENSDSENIFYGSYEDI VQELGVSKPTVVKTFRQLIDTGLLIRLKNKIYKIQPDISHYKE >gi|197325098|gb|DS990368.1| GENE 60 54332 - 55936 1248 534 aa, chain - ## HITS:1 COG:Cj1492c_2 KEGG:ns NR:ns ## COG: Cj1492c_2 COG0642 # Protein_GI_number: 15792807 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Campylobacter jejuni # 269 496 1 210 226 117 36.0 6e-26 MKKKIFGTSLEAKTRILVFNIACGLLSLAVVSYIFFYSLKYDYNTLFAEHHQSLVELEEL RQILNNTENHSNDTALSQTQISKLQDEIKKYWDSYKANETKNSQRSNLILLALKVYDFFD KHDTILKEKEKLLNKQKDFNKLDSSIQTFLKNLNTLKENPFEFKNQIAILNQDISNIILS SLNLVEIKKDRNSALHNLLHILVLVIMCLIMMITILLSHLVLSNIKHLHNTLETKIKEKT KELQDLNNSLQETIKKEVLESRKKDQIMYQQARLASMGEMIGNIAHQWRQPLNALMLLIQ AFKVKSQNGKLTQEFINTQVEDGLKIAKKMSQTIEDFRNFFHSSSHKEPFNLKENIKDSV SLVEIFLKQNEIELNIECPEDIVVYGYKSSFSQVLLNLIKNSEDILKERQITPAKIRIAA SIKETKIAPKDTKQEEYVQILFMDNGGGIRLKDIQKIFEPYFTTKHKSVGTGIGLYMSKQ IIEKQMQGSIEVKNAKWNLDAKLSPTIECLQDCPTENNQCGALFIITIPLKGEE >gi|197325098|gb|DS990368.1| GENE 61 56031 - 57800 1883 589 aa, chain - ## HITS:1 COG:HP1556 KEGG:ns NR:ns ## COG: HP1556 COG0768 # Protein_GI_number: 15646163 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Helicobacter pylori 26695 # 35 583 47 597 615 456 45.0 1e-128 MNDADSKKAGKILLIFLMIISGFCIFLGTIFYHIFAERKLPNLQAKRIENAIRGSIYSND GFVLASSKKVYKAVVNTYNIDPQKKDLFVNLFSIYSQIPKNEIIHKLQEKGNVVLSYEID SKTASYLKQLNIKLNALDVFRAYENENGYVFKYGLSVVESGESRDYLYNDTMEPILGYIN KQNEGDFTLVNGVKGIEKSFNEELEPLNDLLMIGERDISFNVILNKNSTFQERKDGYNVV SSIPLKLQKKVEQIIDENQQQLNAKEIIVGIMESKSGKILSLASSARFNPNAITKEDYPY LNASAIEYSYEPGSIIKPIIYSILLDKNLINPNEKIFLENGRYKLRNFYITDTRRLGEAN LEDILLYSSNIGMAKISQRLTPEEYYSNLKAFGFGEKSGIDLPYEKIGTIPEIRRLRSEV YKATVAYGYGLRTTFIQMLKAYNIIVNQGVAYTPYLVEYLYDSKGNRYKLKHEDPLRVIN NNTAKKVKETLIKVVTQGGGRGAQVSGVIVGGKTGTAHIAQGGQYVRKYNSSFFGFAGDK DGREYTIGISVFEPNEEKAYFAATTAIPLFRQIVELLIKENYLYAEKAK >gi|197325098|gb|DS990368.1| GENE 62 57800 - 58117 474 105 aa, chain - ## HITS:1 COG:HP1557 KEGG:ns NR:ns ## COG: HP1557 COG1677 # Protein_GI_number: 15646164 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar hook-basal body protein # Organism: Helicobacter pylori 26695 # 36 105 40 109 109 87 72.0 6e-18 MEINKYGIDAEKINSQLKDVPNLSPNHNLNPPNKSFENMLKDAFEEVNEHQKTTEQAMAD MATGQIKDIHQAAIAIGKAENSMKLMLEVRNKAISAYKELIRTQI >gi|197325098|gb|DS990368.1| GENE 63 58128 - 58628 441 166 aa, chain - ## HITS:1 COG:HP1558 KEGG:ns NR:ns ## COG: HP1558 COG1558 # Protein_GI_number: 15646165 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Helicobacter pylori 26695 # 1 165 1 160 161 222 73.0 3e-58 MFLSSFDISGYGLSAQRQRVNLISSNIANANTTRTDEGGPYRRRELILKAFDFDKVLNQK YQKSNNLLKYEDPLDEMDSFNEQREPKPALMSVYVDKIVRDDSQPKMKYEPNHPDANSEG YVAYPNINAVVEMADLIEATKAYQANVAAFQSAKNMANNAISMFQA >gi|197325098|gb|DS990368.1| GENE 64 58640 - 59074 641 144 aa, chain - ## HITS:1 COG:HP1559 KEGG:ns NR:ns ## COG: HP1559 COG1815 # Protein_GI_number: 15646166 # Func_class: N Cell motility # Function: Flagellar basal body protein # Organism: Helicobacter pylori 26695 # 5 144 2 140 140 147 59.0 8e-36 MSIFNFSQARGLAQEALDYRSLRRDMIAGNIANVSTPMYRPKDINFEQMMANKADEIFNR NRKMELDLALTNSNHLLPLEDLDKNRSTFFYRDGHLARNDGNSVDLDIETSEMAKNDIMY QALVGALRKQGGIFSNAIDSTKNI >gi|197325098|gb|DS990368.1| GENE 65 59342 - 60133 1183 263 aa, chain - ## HITS:1 COG:jhp1492 KEGG:ns NR:ns ## COG: jhp1492 COG4786 # Protein_GI_number: 15612557 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Helicobacter pylori J99 # 1 262 1 262 262 345 69.0 6e-95 MMRALYTATTGMLGQQLQIDVTSNNISNVNTFGYRKERAEFADLFHQVLQYAGSSTSETT LSPTGIEVGLGVRPTSVQKIFSQGNFKETENNLDIAITGNGFFQIELPDGTIAYTRDGSF KLDDEGNVVNSQGYLLVPNITIPDDATQINIGTDGTVSVVQGNETEVNELGQIETVNFIN PAGLHALGDNLYLNTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLIVGQRAY EANSKSIQTADSMLQIVNQLKRN >gi|197325098|gb|DS990368.1| GENE 66 60145 - 60978 1096 277 aa, chain - ## HITS:1 COG:HP1092 KEGG:ns NR:ns ## COG: HP1092 COG4786 # Protein_GI_number: 15645706 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Helicobacter pylori 26695 # 1 277 1 269 269 259 51.0 3e-69 MQGGYYSSVGGMVTQINRLDVIANNIANANTTGFKRDDVVIGDFMRLYEQHKEFLPIKDQ TKDAAKFYNRSLNRVPQIVEEFTDRSVGGITQTDNTFDFALSRENAYFMIETPEGIRFTR DGSFVLNQEGRLVNKEGYAVLPREYIESPQYIEIIDGFQIEVDKDGNLYNRSLNNEELNE TILTANIAVVSFENPKFLQKIGDNLYKYPNERMNEMEVLERSGAVRQGYLEKSNINVVYE MTGLIETNRLVEAYSKVLKTHMDDLNTEAITRIAAKA >gi|197325098|gb|DS990368.1| GENE 67 61056 - 61439 595 127 aa, chain - ## HITS:1 COG:no KEGG:WS0215 NR:ns ## KEGG: WS0215 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 125 1 126 128 134 53.0 1e-30 MKIAIPVYDEDLKIFGNTGHTPFFAVFEQKGNGMFKHFDLLDLRKNPRGNIQASEGCSHK DEEMSQEEQIAHKLEHNVLGEIIKDCQAVLVKKACKNTAKVFQEYGIKICKVELDCQNAK DSFKYLK >gi|197325098|gb|DS990368.1| GENE 68 61453 - 62526 1011 357 aa, chain - ## HITS:1 COG:no KEGG:WS0216 NR:ns ## KEGG: WS0216 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: Porphyrin and chlorophyll metabolism [PATH:wsu00860]; Metabolic pathways [PATH:wsu01100]; Biosynthesis of secondary metabolites [PATH:wsu01110] # 8 349 1 330 330 219 36.0 1e-55 MKKKGVQISVNEIVEVAFGTLLNQPSISFFNQICDDVEKIKKGDLFVVKDPKDIQKAINL GAFGILFSGEIAMEDSEVAWISVENLEESLLRILRHYLIINNKILYSLNNEEYELSHQIL IPKKNFAYCEGSLVELIAFVLENGEFAYILYHNQDKIKFEKLPQFQQEIKALDTQKIPDE SLPFATNSFSLFGIKIFYQSTDYSLPLPKLFIQPLARVIKFAEEHFLNVDLEKLEGISSF KPLYLDERGFISKPGATNKVVLTCVEIHLYEQFLAYFSMYAKWAKLMLFIPKIYQELFTP YAEVKTYETKEELFSLVLMQKYNFALVFGVNLEEFEERFSAKEKEQNLFDLLDETKN >gi|197325098|gb|DS990368.1| GENE 69 62769 - 64604 1736 611 aa, chain - ## HITS:1 COG:Cj0838c_1 KEGG:ns NR:ns ## COG: Cj0838c_1 COG0143 # Protein_GI_number: 15792176 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Campylobacter jejuni # 10 518 3 504 525 617 59.0 1e-176 MEEILNSKFYITTPIYYVNDVPHIGHAYTTIIADTLARYHRIQNEEVWFLTGTDEHGQKI QQSAEKNNKNPKEYVDEISAKFKNLWDSFGISYDAFIRTTDSYHKESVRNVFSKMFKKGD IYKGEYEGNYCISCESFFAKSQLINHKNCPDCGKETNLLKEESYFFKLSAYEDRLLQWIE SNPDCILPRMRRNEVINFIKEGLEDLSITRTSFDWGIKLPSEIESNDSKFVMYVWLDALV NYLSALGYENSKENKMEFWPANYHLVGKDILRFHAVYWPAFLMSLELPLPKHIAAHGWWT KEGAKMSKSIGNVVNPKEVVDLYGIDCFRYFVLREVPFGQDGDFSQKALIERFNADLGND LGNLLNRLLGMGAKYFNNSLQVDLKSYKQSFEAESTTIKTILGSLKNFMNEVQIHRYLEE LWKIFSLGNGIIAKKEPWKLIKEQKEQEVAELLVFIANLLIKGALCLYPCMPDSAKKILS VFGLEASAQNYLNFILDDKILSQVSLNPIPALFPKIEETPIETKETNLKTNNKQTSKETL KALTIENPISKEDFAKIEIKIGTIIEAEALPKSEKLLKLKVDLGESRTRQILAGIKAYYA PQDLIGKQVCV >gi|197325098|gb|DS990368.1| GENE 70 64582 - 64758 160 58 aa, chain - ## HITS:1 COG:no KEGG:NIS_0795 NR:ns ## KEGG: NIS_0795 # Name: not_defined # Def: hypothetical protein # Organism: Nitratiruptor_SB155-2 # Pathway: not_defined # 4 58 11 65 65 67 60.0 2e-10 MVILNLQENTKILQECQREQNFSSCLLCQKVLNCAIRNRYVNAVYLSMNKGNGGNFEF >gi|197325098|gb|DS990368.1| GENE 71 64952 - 65812 922 286 aa, chain - ## HITS:1 COG:Cj0840c KEGG:ns NR:ns ## COG: Cj0840c COG0158 # Protein_GI_number: 15792178 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphatase # Organism: Campylobacter jejuni # 9 280 1 271 280 243 47.0 4e-64 MQKQLQQDLESIFAIIKNASLKVYEVLKESMGEYTQTTNKTGDLQLQADVLADKIFQDSL KDLKIIKQICSEEQEEAVKFHDEGIYSIAYDPLDGSSLMGANLSVGSIVGIYKGDFLPQN LIAAAYVVYGMVVGIGFASALKEGVDYYIFNGKDFELQKILKLKEKGKLNATGGTQKYWS KEHKAKIESLFNQGYRLRYSGGMVPDLHHILIKGGGLFSYPSTQDSPKGKLRMLFEVFPF AFIFKSAGGEAIDGKNDLLTLTPKHLHDTTPCFLGSKEEIDFVRSY >gi|197325098|gb|DS990368.1| GENE 72 65942 - 66577 817 211 aa, chain + ## HITS:1 COG:Cj0451 KEGG:ns NR:ns ## COG: Cj0451 COG0036 # Protein_GI_number: 15791815 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Campylobacter jejuni # 1 211 1 212 215 257 62.0 1e-68 MLVAPSILSADFGKLNEEIKAICEAGCDLIHIDVMDGHFVPNLTMGPMIVSSVAKIATKP LDIHLMVQNNSFFVDLFAPLKPKYLSFHIEEEKHANRLVQKIRDYGISPAIVLNPHTTLE SIDYLLEYVDMVLLMSVNPGFGGQKFIPNILEKIKYLKDKIELRNPRCLIEVDGGVSDKN IMELKESGVDIVVAGSYVFNGNYKERINSLK >gi|197325098|gb|DS990368.1| GENE 73 66607 - 67419 1030 270 aa, chain - ## HITS:1 COG:Cj0772c KEGG:ns NR:ns ## COG: Cj0772c COG1464 # Protein_GI_number: 15792110 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Campylobacter jejuni # 36 270 24 257 257 254 54.0 2e-67 MFKKVLSIFGLVGILAFSGCGDSKEKTATQTTETKLIVGATPEPHAVILQEVAPMLKNEG VILEIKEFTDYVTPNLSLNDGSLDANFFQHKPYLDSFNKERGTNLVSIANIHLEPMGVYS NKIKSLDELKEGDLVSLPNDPSNGARALRVLEANGVIKLKEGVELVSVQDIVENPKKLNF KEMDAPQLARALNDVTISVINTNFALLAGLNPLDNAIALESKESPFANIVVVKAGREKDA AIQKLVQALQSQEIRDFILEKYKGAILPSF >gi|197325098|gb|DS990368.1| GENE 74 67446 - 68096 775 216 aa, chain - ## HITS:1 COG:CAC0985 KEGG:ns NR:ns ## COG: CAC0985 COG2011 # Protein_GI_number: 15894272 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Clostridium acetobutylicum # 5 212 7 214 218 182 60.0 6e-46 MDIKLLKLLLEATLDTLYMSIIATTIATALAVIPAILLVLCSPNGLKPNVIIYRFLDTIT NTLRSFPFLILMVVLFPFTQWILGKSIGATAAIVPLSIGAAPFIVRIIEGALKEVDKDVI EAAQSFGASHFQIIFRIMLIEALPSIVSGITLALILVIGFSAMAGAVGGGGLGDIAIKYG YYRFQSDIMVYTVVILILLVQIIQSFGDFLYKKLKH >gi|197325098|gb|DS990368.1| GENE 75 68102 - 69061 1111 319 aa, chain - ## HITS:1 COG:Cj0774c KEGG:ns NR:ns ## COG: Cj0774c COG1135 # Protein_GI_number: 15792112 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Campylobacter jejuni # 4 317 2 334 336 346 55.0 3e-95 MDFIKVRELYKNYGKLEVLKNIHLDIKKGSIFGLVGHSGAGKSTLLRTFNGLESINHGSI KIGEVEINHLDSKKLRHFRKKVGMIFQNFSLMTRKNVYENIILPLECWGEHINKNRVEKL VELVGLQDKMKFYPSQLSGGQKQRVAIARALVMNPDLLLSDEATSALDPSTTNSILELLS QINQEIKVTIVLVTHEMEVVKKICQEAAFMENGEIIKSGPIESLFLEPDKKMREFLGENE ILPQNGINIRIYFPKEVAQNPIITQMARELQVDFNIVWGNLESFGGIALGVLVINIKQEF LEQVCAFLTQSGTRWEIVE >gi|197325098|gb|DS990368.1| GENE 76 69115 - 69717 780 200 aa, chain - ## HITS:1 COG:jhp0104 KEGG:ns NR:ns ## COG: jhp0104 COG0235 # Protein_GI_number: 15611174 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Helicobacter pylori J99 # 4 189 15 201 212 196 47.0 4e-50 MEKIFQDLKTISLAMFRKNFFGIFHGSISTKLEEGHFLINKKDAIFDDLNEESLITLYHK QDYRWQEASMDAFIHSLLYQNIPNAKYIAYGMPPFTIAYTLSNNKITPKDYFGYKILGTL EVYDPKDYDNWYERADVEINRYFKENDKKIMVIKGYGVYVYHRDLQYLSKLMAILENSCK VLHFHSILEGNKPSYELLDF >gi|197325098|gb|DS990368.1| GENE 77 69719 - 70111 452 130 aa, chain - ## HITS:1 COG:Cj1235 KEGG:ns NR:ns ## COG: Cj1235 COG0739 # Protein_GI_number: 15792559 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Campylobacter jejuni # 1 125 146 270 273 184 70.0 3e-47 MKSKITSEFGNARVFNQEVKSYHSGTDFRAAIGTPIYASNSGKVVIAKDRFLAGKSVVID HGEGIFSMYYHCSEIKVKEGTRVKQGELIALSGNTGRVSGPHLHFGILVRGAQVDPIDFI AKINASLEEN >gi|197325098|gb|DS990368.1| GENE 78 70176 - 70520 332 114 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224417713|ref|ZP_03655719.1| ## NR: gi|224417713|ref|ZP_03655719.1| hypothetical protein HcanM9_00406 [Helicobacter canadensis MIT 98-5491] peptidase [Helicobacter canadensis MIT 98-5491] peptidase [Helicobacter canadensis MIT 98-5491] # 1 114 1 114 114 209 100.0 5e-53 MKKIIILLLCVLGGFTGFAKEFTIENGKTLILESKSPNPKSIILDKREYLWIPHPKDDSK KILFLAVPYYTKEQTIKLGSDNVLQIIKGDYKSEQISVDSAKAKPNPKNQARKR >gi|197325098|gb|DS990368.1| GENE 79 70917 - 71459 653 180 aa, chain + ## HITS:1 COG:HP0110 KEGG:ns NR:ns ## COG: HP0110 COG0576 # Protein_GI_number: 15644740 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Helicobacter pylori 26695 # 2 180 14 187 189 126 50.0 2e-29 MQDENEKIDSSGNENQEQELQENAEQDSKESLQNKIKELEDQYLRTYADFENTKKRLVRE KDQALEYAYEKIAKDLLPSIDTLEIALKTIKDSKENSDQAEILGKIEEGIALTLDNLLKT LAKHGIEPIDANGEFDPNFHDAIMQVQSDSHNVGEIVAEMQKGYKYKERVLRPSMVSIAK >gi|197325098|gb|DS990368.1| GENE 80 71482 - 73359 2827 625 aa, chain + ## HITS:1 COG:jhp0101 KEGG:ns NR:ns ## COG: jhp0101 COG0443 # Protein_GI_number: 15611171 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Helicobacter pylori J99 # 1 625 1 620 620 882 82.0 0 MGKVLGIDLGTTNSAMAVFEGNESKIIANKEGKNTTPSVVAFTDKGEILVGDPAKRQAIT NPEKTIYSIKRIMGLMFNEDKAQEAKKRLPYKVVDRNGACAIEIAGKVYTPQEISAKILM KLKADAESYLGEEVTEAVITVPAYFNDAQRKATKEAGTIAGLNVLRIINEPTSAALAYGL DKKQAEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNAIIDWAAKEFED ENGINLKNDVMALQRLKEAAENAKKELSSAQETEINLPFITADASGPKHLVKKISRAKFE SLIESYINQTINKIGDVIKDADLSKSDIAEVVMVGGSTRIPKVQERVKEFIGKELNKSVN PDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKIIDRGTTIPVKKNQVF STAEDNQPAVTIQVLQGERELARDNKVLGNFELSGIPAAPRGVPQIEVTFDIDANGILTV SAKDKATGKAQEIKITGSSGLSDSEIEKMVKDAELNKEEDKKKKEAIEVRNQADSLVYQT QKSLDEMKEKIDSSEAEKIQNAINDLQTTLKNENASKEEIEQKVKALTEVSHKLAEAMYQ KDQNAQGGATQQNKKDDDVIDAEVE >gi|197325098|gb|DS990368.1| GENE 81 73627 - 74856 1250 409 aa, chain + ## HITS:1 COG:jhp0552 KEGG:ns NR:ns ## COG: jhp0552 COG1538 # Protein_GI_number: 15611619 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Helicobacter pylori J99 # 9 409 81 476 477 110 21.0 5e-24 MVFCLFCMDISANPLKSLIISANNNPLLESKNYQTQALKEEKKALYSGYLPKVEVGYAYQ NTNNPDIFYPKSINGPFVEASWLLFDGLKREGKFAIQNHKIKASEFSALSTKQQIFLKII QEYFQALALKSKRKALLSQQNELEQSIIKYQTFFESGLASQDTLEAIKSQFSQNSYQLEN INLALEARKEQISLLSGVENFLLDDLVNIKEISTQTPQKQRADLQAQFHYVKSLENASTQ YTYLPTIALSNRYTNYQYHNRNIPALPFPVSIDDPKYQNVFGVSVSFVLFDSFATLKAKE SAHLQALAANSEYAYQKDSQKRERIIAQNALETAKEKIQWASSALTSASIAYTYAKEKFN SQLIDYTQYLKALSNLFNAQSFYDEARFDYEIKKAEFLYSNGENLEEFL >gi|197325098|gb|DS990368.1| GENE 82 74853 - 75590 725 245 aa, chain + ## HITS:1 COG:HP0606 KEGG:ns NR:ns ## COG: HP0606 COG0845 # Protein_GI_number: 15645231 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Helicobacter pylori 26695 # 1 242 2 231 234 156 39.0 3e-38 MRQILISILCFLPLFGEGIYATFNIQATQSATLSLASNGVIEEIFVEVGDFVEKGEKLLT LKAKDLQENVKIAKATLDSAKIEYNFLESQYKRYQSSKNVIDKNTFERIQSQYQSSLYAF KKAQANYNLQKELLDKTILYAPFSGVISNKFVEVGDGVGAISSKLFVLESKQKKAMIEFD SQYFSQVKVGDKFQYKLQNIEQKDPLILTKIYPSIDMKTKKAKAEALLKRDLPSGIFGDG LILGQ >gi|197325098|gb|DS990368.1| GENE 83 75590 - 78643 3231 1017 aa, chain + ## HITS:1 COG:HP0607 KEGG:ns NR:ns ## COG: HP0607 COG0841 # Protein_GI_number: 15645232 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Helicobacter pylori 26695 # 1 1017 1 1022 1028 907 49.0 0 MSRIAIERPIATLMFVMALIFFGADALKRLSVSLYPNVDIPVITITTLYPGANPEIVESK VTEKIEEAISGIESLKKITSNSSDSVSVVVAEFELEKPLEIAANDVRDKVLSVSFGSEVK SPVVEKFNVGGAPIISLFVSPKTPITNEKELLEINTHTNWNIKPLLQRIKGVGKVNLVGF LEREIRIIPNPTLLNQYNLTYLDLARAIGAQNVEIDGGRIITKDKEWKILTQADSKNLEE LGNILVGDNIKLSDIAKIEDSTEEQRSFANLLSKDLQGNGILLEIQKISGANEIEITDAI REILPSLQESSPKYNLTLLRDTTTYIKDTIWSVELDLILGAFLAVFVVFFFLRNASMTWI ASLSIPASIMGTFAFMYYWGMTLNLTTLIAITLAIGIIIDDAIVVIENIYKKIEAGIPRK EAALIGVKEIIFALIAISAMLLSVFVPIANMGGITGRFFVSFGISLGACIIISFFVVITF IPMLSSRVANHTQSAFYLQTEKYFKALEAMYVRILKWVLAHKAFVILSIVSIFVVSLLLI TRLGVEFLPSEDKAEFDINLTAKPGISLEAMQKQALAIQERLSQEEEVEYSILKIGYTAE KKVYEAKIYVRLVPYNKRERDLQEVMQFLRGVYADYAKQFDLEITLIEIPQISLGEDDSP LQLALYSLDNVALQTSVERITNFMEQSGKYKDIHTNIKPQTPQLEITINRALASQYGFSA QEIAWVINSAFSGTQEISYYRENGKEYDIVLLAPKRNQIEDLKTLTLRNAKGENVFLEGM VKIKEVGGVTTIRHYDRQKSVMVYANLAENVSLGEATNFLEENKDSWLESSVHYKIEGYA KYMQESNEAFTIAMTMAFILIYFILAALYESLIQPLIIMITLPLSFTGAFLGLFISGESL SLFSIMGLMLLMGLVGKNATLIIDVANEKHREGMELESAIIKAGESRLRPILMTTIAMIF GMLPLALAGGAGSGIKSPMGIAVIGGLLVSMILSLLVVPALYRLLSPLDEKLRKYYR >gi|197325098|gb|DS990368.1| GENE 84 78713 - 78937 458 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417720|ref|ZP_03655726.1| ## NR: gi|224417720|ref|ZP_03655726.1| hypothetical protein HcanM9_00441 [Helicobacter canadensis MIT 98-5491] flagellar protein flgE [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] flagellar protein flgE [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 74 1 74 74 79 100.0 1e-13 MDPISMNSYSGYNAFSNAQSGINANVQNATLETSNTDLTQSTANTITAQNGVEANVASMQ TADSMYQSLLDITA >gi|197325098|gb|DS990368.1| GENE 85 79021 - 80877 2440 618 aa, chain + ## HITS:1 COG:HP0422 KEGG:ns NR:ns ## COG: HP0422 COG1166 # Protein_GI_number: 15645050 # Func_class: E Amino acid transport and metabolism # Function: Arginine decarboxylase (spermidine biosynthesis) # Organism: Helicobacter pylori 26695 # 3 610 6 614 615 875 71.0 0 MVDYGIHYWANDDFIIEDGKVKVNFGNKPALIDIVKQMREEGYRGPLLIRFPHLMKKQVE KIFSHFENSIKEYHYKGKFKAVFPIKVNHFPNFILPLMEQTQNRCYGLEAGSKSELIIAM AYTNENAPITVNGFKDKEMISLGFIAAKMGHDITLTIEGLNELETIIEVAKAMGKPYPKI GLRIRLHSTGVGIWAKSGGINSKFGLTATELVEAIYLLQKNKLLEQFTMIHFHIGSQISD IAPLKKALREAGNIYAELRKMGAKNLNNVNIGGGLAVEYTQYEAYQNRNYTLGEFSGNVI FTLKEIAKNKKEPEPDIFIESGRYVSASHAVLISPVLELFSQEYDEKALHLKDKNPPLVE ELLDLYNTINERSAIEYLHDSLEHMESLLTLFDLGYIDLQDRSNTEVLVHLIIKKVIKIL KHKNHSDIIRIQEQVQERYLLNCSFFQSLPDYWGLKQNFPVIPLDRLNKRPTRSASLWDI TCDSDGEIAFDKNYPLYLHDIDVNSEEYFLGFFLVGAYQEVLGMRHNLFTHPTEFSVVFD EEEGKYEIENLLEAQTILDVLDDLDFDTKEIERRLKQKLDESTEIPQDEKKEVLGQLYVM LSENGYLRTVFKSQGELN >gi|197325098|gb|DS990368.1| GENE 86 80874 - 81575 825 233 aa, chain + ## HITS:1 COG:BH0110 KEGG:ns NR:ns ## COG: BH0110 COG1045 # Protein_GI_number: 15612673 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Bacillus halodurans # 7 207 4 209 229 208 51.0 7e-54 MKYATSLFGTIKEDFCVILEKDPAINSKIELFFNYPGLIALVHYRLAHKLHLKGFKILAR ILMGFTQWITNIDIHPACKIGHRVFIDHGIGVVIGETAEVGNEVTIYQGVSLGGVSLEKT KRHPTIEDNVIIGAGAKVLGNITIGANSKIGANSVVIASVPPNSTAVGIPAKVVVKGKSN DLNKIPDIQFQLFNYLQKRLELLESQLPHSKELQESIEKLNAMYYEFLKSKKE >gi|197325098|gb|DS990368.1| GENE 87 81581 - 82048 493 155 aa, chain - ## HITS:1 COG:Cj1386 KEGG:ns NR:ns ## COG: Cj1386 COG0666 # Protein_GI_number: 15792709 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Campylobacter jejuni # 1 155 1 155 156 220 79.0 8e-58 MNEISLEEEKRFGELCNMAFNFARNNEFENLKIMIEAGLNVNLKTHKGDTLLMLAAYNNS LETAKMLLEKGAKVDEKNDRGQTPLAGVCFKGYLDMAKLLVSNGANIDENNGLGMTPFSF AIMFRRKDVARYLMMHSKQSLFKKTSFLILNLLKK >gi|197325098|gb|DS990368.1| GENE 88 82135 - 83559 1283 474 aa, chain - ## HITS:1 COG:Cj1385 KEGG:ns NR:ns ## COG: Cj1385 COG0753 # Protein_GI_number: 15792708 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Campylobacter jejuni # 1 472 1 472 474 823 86.0 0 MKKLTNDFGNKVADNQNSLSAGPKGPLLLQDYILLEKLAHQNRERIPERVVHAKGSAAYG ELKITADISQFTKAKVLQKGEVTPLFLRFSTVAGESGAADAERDVRGFAIKFYTKEGNWD LVGNNTPTFFIRDPYKFPDFIHTQKRDPRTHLRNANAAWDFWTLCPESLHQVTILMSDRG IPASYRHMHGFGSHTYSLLNDKGERFWVKFHFKTQQGIKNLTNKEAEEIIAKDRESHQRD LYNSIEKGDFPKWTFQVQILPENEVDKLGFNPFDLTKVWSHSVVPLMDIGEIILNKNPQN YFNEVEQAAFSPSNIVPGIGFSPDKMLQGRIFSYPDAHRYRIGTNYHLLPVNRARSEVNT YNVAGAMNFDEYKNKSAYYEPNSYDDSPKEDKNYLEPDLNLEGAAQRYAPLDNDFYTQPK ALFDIMNASQKEQLFKNIASSMEGVEQKIINKALMHFEKISKEYAEGVKKALGQ >gi|197325098|gb|DS990368.1| GENE 89 83785 - 84369 714 194 aa, chain + ## HITS:1 COG:Cj1224 KEGG:ns NR:ns ## COG: Cj1224 COG2703 # Protein_GI_number: 15792548 # Func_class: P Inorganic ion transport and metabolism # Function: Hemerythrin # Organism: Campylobacter jejuni # 1 191 1 194 199 162 44.0 3e-40 MLPSWSKELSVHNDAIDEQHKQLFDIAGRAYALVNKKATKEEIVIILKELLNYTQEHFRD EEIYMESIHYPRLEQHRERHREIIRDMTNSVMQIRNVDDLKEKLAVIAKKWLLEHIIRED MQIEKFRRSVCQINPSMPKKETSEVEYEESKFKYTCQCKGKIHLVPLALHNKIQKEKALF NCKICKASIQLLET >gi|197325098|gb|DS990368.1| GENE 90 84379 - 86298 2317 639 aa, chain + ## HITS:1 COG:Cj1645 KEGG:ns NR:ns ## COG: Cj1645 COG0021 # Protein_GI_number: 15792950 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Campylobacter jejuni # 7 632 3 626 632 803 63.0 0 MLDQNEIKEYQLMADSLRFLCADMVQIANSGHPGAPMGLADIAVVLGYHLHLNPKNPQWI NRDRLVFSGGHASALVYSLLHLWGFDVSLEDLKAFRSFGSKTPGHPEYKHTPGIEITTGP LGQGIANAVGFAMAGKLAQNMLGDLISHKVYCLCGDGDLEEGISYESCSLAGHHSLDNLI VIYDSNNITIEGDCGVAFSENIKMRFEAQGWEVLEIDGHNFMQIDLALSKAKVSNKPVLI IAKTTIAKGSIHLSGSHKSHGSPLGESEIEESKKALGFDSKLKFFVPDSARIRFKNTQEL GELANKEWEKILVKSDKKSLLEAMLNPDFSKIEYPNFDETKSVATRASNGEILNAIAKAL PGFIGGSADLAPSNNTELKGMGDFPKGRNFHFGIREHAMGAISNAFANYGLFLPFCATFF VFSDYLSPSVRVASLMKSKVFYVWTHDSIGVGEDGATHQPIEQISHFRAMPNLSVFRPSD ANENIACWQVALEIEGPCAFVLSRQNLPIFGKVTKEQVKKGAYVKQESSKEPQITLLATG SEVELALRSAKELESQGLATQVVSVPSYDLLMQQEKTYRDSLLKGKVIAIEASRGLEWYA LADIVIGMQGFGASGKGEILFEHFGFSVENIVKIAKENL >gi|197325098|gb|DS990368.1| GENE 91 86301 - 88532 1883 743 aa, chain + ## HITS:1 COG:jhp0336_1 KEGG:ns NR:ns ## COG: jhp0336_1 COG3893 # Protein_GI_number: 15611404 # Func_class: L Replication, recombination and repair # Function: Inactivated superfamily I helicase # Organism: Helicobacter pylori J99 # 2 469 11 492 520 195 29.0 3e-49 MAKLYLFSNTRAIKAFFERDYLASFLPDAQSIGEFLEFVLRVEGKSKIPSFLRHIYLYQS IQESNSKEFGEFAKNFSQFLNNSDFFFKFYEELCAGCVRLEMLEKLDIYAFYDDYLRVLK RIFELYSKKLAENHFFDQYFLEDYKITFEILGIYESIEVYLEGFLSHFEMRIFQEISLQK PILLKIFINPFNIEYYQKLFGLSLENGKFTLKLENKRLEILSFESKIEIPNNLKLLEFDS KISEVGGIFTQIDLWLESGISPEEICIILPNEEFAKYLQLFDKARNFNFAMGKKLQETSF FKRLQSLAESAQSFEEFWQFIEEMQENTWEDKEVKKIILQRLEYFSFGLKFLDSLQTRDK IYAFFMMLKKETIDDIGGGRISVIGILETRGIAFSYVILPEFNQNNVPKVSQKDIFLNSI IRQKVGLPTRKDRENLQKYYYAKLFAHSKEACVMFVSNEEEEPSRFLLEEKIFKNASFAK ASRKYGEYFLNGELLSYKEKEIIAPLDFGVMSATKLECLLTCKRKYYYRYVLGYKEQMDF NVGTQIHKALQKAYVNFAIHRDFEKLQQEAYENLQVYENKREYFELEIAKRYLQKFFYAE RKHLEDGWIPIEFEKEFSLQVCEIPFRGRIDRIDKKGESVLVLDYKYKKNLKVSTQRSID TSKDFQLVLYALALQESYSEVEAGFYDIYEASIKKEEILQEKKQKLLEKLEELKEFKKEF SFELCKERAPCNFCEFIYLCKRY >gi|197325098|gb|DS990368.1| GENE 92 88507 - 89004 524 165 aa, chain - ## HITS:1 COG:no KEGG:HH1706 NR:ns ## KEGG: HH1706 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 155 1 158 170 98 43.0 7e-20 MSKTKFYSLFSALYLLFIALSIGLILASAFSASVVFRGASLAEGLEITLFQSGILMTQIF VKVNFLLNILALLILIYELIALQTTRQKFTPLLGFINAILILLFTLYYTPYIIEAQTIGE TAIETLEFNQMHQQSELVFKTLLVTLILLFFARFFGILNSVCKGK >gi|197325098|gb|DS990368.1| GENE 93 89197 - 89364 200 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315452741|ref|YP_004073011.1| ## NR: gi|315452741|ref|YP_004073011.1| hypothetical protein HFELIS_03370 [Helicobacter felis ATCC 49179] putative uncharacterized protein [Helicobacter felis ATCC 49179] # 1 55 12 63 63 85 83.0 1e-15 MNVMAERTGLEPATPCVTGRYSNQLNYRSKAESGGRYKTRTCDIHLVRVALYQLS >gi|197325098|gb|DS990368.1| GENE 94 89601 - 90635 256 344 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 184 330 750 894 904 103 38 2e-20 MNTLFCIGKNYSFKPLQDYSIRYAQSLFEEIHCTWFLDSTNNIDLFKNLNHAIEISQNLL ILTNDSILNEILNDFKKHSLPMPTLEKNHYTLTFKNCNITLQNSPQIPQSTDTNNTFLYL LGFDCQSALTLLNPLAKAHQIQLQTLQNTCGIEILQAKALSHKTLSTFLKEMSQIFQNKI FSSSNLAQSIIQLLANSKQKITTAESCTGGLVAYYLTKESGASEVFDGGIISYANAIKES WLKVSNSNLIAYGAVSEAVVREMLDGALSLSGADFAIATSGVAGPNGGNASKPVGTIFIG VKSKNGEEIINRVLFSGDRNYIQEQSCLYAYLIFLKLFFKTIDF >gi|197325098|gb|DS990368.1| GENE 95 90719 - 91591 1085 290 aa, chain + ## HITS:1 COG:PA0141 KEGG:ns NR:ns ## COG: PA0141 COG2326 # Protein_GI_number: 15595339 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pseudomonas aeruginosa # 18 268 25 274 298 279 56.0 4e-75 MSKTLVVRPEDERPGEVYNKKGKLNKAFYEEEIKKLQIELIKLQNWVKKYQKKVIVILEG RDAAGKGGTIKALREHLNPRGARVVALQKPSDVEKTQWYFQRYIDELPNGGEIVFFDRSW YNRAGVERVMNFCSNEQYKEFIIQVSHLEQMLIESGYILFKFFLDVGQEEQKKRIEARKD EPLKRWKLSPIDELSLNLWDEYTEAFEKMFSRTHTPFAPWLIVDSNDKKRARINLARILL SKIDYEDKDAENVCLLADPGIVSYYSSVRMFSKEQEEGLQKKKKKKKDKK >gi|197325098|gb|DS990368.1| GENE 96 91870 - 93990 2925 706 aa, chain + ## HITS:1 COG:Cj1506c KEGG:ns NR:ns ## COG: Cj1506c COG0840 # Protein_GI_number: 15792820 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Campylobacter jejuni # 4 706 2 700 700 633 51.0 0 MNPFKNLSIGTKLVASIGIIMVIGLAILSIIIATRVSDSMSKSAEAIIMEASKGYANTVE ASVNEMIALNNAATNSIESIFTSTPRQNISMNQIEETIVNVLDSGSYTDYAFVYLKNPLG FNANGRFTKMDDGNYMALWQDKDVRFAGGITSLRVGSDLQLNSVKMALAASSADDGKVFF GIPRKFSLGGKEFVGIGMAMTLYDENHSVIGAVGFIFNFESLAEVLAEVLLDPSNKLFDG SIIGLLNEDGTILVHENESLIFKKMQDINKDPKAAEGVRAMVEGKAGVYDYVATDKAPSY ASVMPFSSVGGAINWRLLVTAPKSSVLASLYTLEYIIAGTSVVFLIIVMSFVYFYIRKNV SKRLTVILDTLDKVFKYINHESKDIQTIKIHANDELGSMGQIINSNIERTRSSLLVDEEA IKEAVETAKEIEAGNLTARISKNPINPQLVELKEVLNKMLEVLQGKIGSDTNEIARVFDS YVRLDFTTEVKNANGRVEVVTNTLGEEIKTMLHTSAKFAKELAARSLELKESMQKLTDGS QNQASSLEQSAAAVEEISASMQNVSDKTMEATRQAEDIKEIVGVIKDIADQTNLLALNAA IEAARAGEHGRGFAVVADEVRKLAERTAKSLGEIEANVNVLVQSVNEMSESIKEQTEGIG QINEAIAQLESATQDNVGVANATNEITRSVDEIAKNILEDVNKKKF >gi|197325098|gb|DS990368.1| GENE 97 94098 - 95018 214 306 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163756109|ref|ZP_02163225.1| 30S ribosomal protein S1 [Kordia algicida OT-1] # 178 299 225 343 347 87 36 2e-15 MKKFLSLSLVLSGMLFAANNQFEITPQIGGSWHVNNKRMADDIDLSYGLKAGARVAPEVL LELGYDWITHAKQSIPDAKTSFNRYYMNVVKEFEVWQSVSPYILGGVGYEDVSNNSQSLD SAPFGQYGVGLRWEAFEYLHLKTELRHLVSFDGRSDVIAMLGFSIPFGTFAPEQVVVVEE EVVIEETQAPALSHIHTFNVEFPTDSAVVDPVYYPEIQDFAKYMDQNPDKTAVINGHTDS TGSAAYNQKLSEKRAQSVKNEIVKQGISSERLEAKGYGEEKPIASNKTREGRQKNRRVEA EVYNAN >gi|197325098|gb|DS990368.1| GENE 98 95023 - 96417 1542 464 aa, chain + ## HITS:1 COG:no KEGG:WS0208 NR:ns ## KEGG: WS0208 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 464 8 470 470 457 50.0 1e-127 MRPIIKHDIAIYAPNIHLEMKEAKEICEVFISNSATIRSLSIKAIYFSFENINWIDEGAT ILVAKALLAIQDKVSIPVAFIGYSNSQFVKLKALFPNRSIPLFKNDSIASFLLGFQMPPI QQKIVYYDNDGMVQTLISHELQVKGYEVICVNNAQAFLEKRKQFLDEAFYIYDIYFDVTG NFIPTTIQNGMVIYTLYKKADKNIALYFNLQAHNSRLREGYKVFVFDVSQIQDFNFGALD FIMSLALNNVRYEACIAICGLQLNLAKEKRELCKRSGIYFFANLEECKQDPQIKEAIKKH QVFDQKRKGLTKHLVAQLPVFINAAIETLSSLTGGEAKRKDYKVTTYNKTGQSDIMGAMI SFEGDVSGIVALCFSRSIVKEASVMLLGEESQSDEELLDVIKEFTNIIAGRSKAILSEHN LSIGISLPKACKSEEEIAQMLVGKQGVQVDLLLNNKPLVLFLAH >gi|197325098|gb|DS990368.1| GENE 99 96400 - 96801 435 133 aa, chain - ## HITS:1 COG:Cj0635 KEGG:ns NR:ns ## COG: Cj0635 COG0816 # Protein_GI_number: 15791995 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Campylobacter jejuni # 5 129 4 125 127 106 52.0 1e-23 MQSILALDIGLKRIGIAKSIHNIPIPLPPILRKNRNQAAKEVSQVICDSKIQTLIVGIPK ESETAAEMERRIKHFVALLEIPDNIKIHFVDESFSSFEALQRMQGSKKSKKKDGTLDSLA AMIILERFLMSQK >gi|197325098|gb|DS990368.1| GENE 100 96801 - 97562 727 253 aa, chain - ## HITS:1 COG:jhp0316 KEGG:ns NR:ns ## COG: jhp0316 COG0758 # Protein_GI_number: 15611384 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Helicobacter pylori J99 # 3 247 9 260 266 217 48.0 1e-56 MQTLDTIPLELQHLKNLKKLYYCGNLELLQNCKVAIIGSRNPNPYAQNFTKEIAKKISSY ATIISGGALGIDILAHSAALPNTIMVSPSSLDIIYPKTNQKTIQEIYQKGLILSQFSPPY IPKHYSFLERNKIIISLAKYIIIPQADLESGSMQSAKYGLNLGKQIYVPPHHLGQSEGTQ RLAKEGKAEVIWEIDSFLANLFGDIKPKNTDEILEFCKTNPFFEEAFAKFGEILFTYELE GKIQRNNGRIEVI >gi|197325098|gb|DS990368.1| GENE 101 97565 - 99694 2287 709 aa, chain - ## HITS:1 COG:no KEGG:WS1882 NR:ns ## KEGG: WS1882 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 9 709 9 709 709 674 48.0 0 MATPKVTHQLQGSILSIAPCKDLTFCVDNTFYITEIDKNLKNAANFQIIKNIEPPHRYSH AFGISPDAYFCISLVGEKKTLIIKLDNSNIKHIATLDDHDGDIESCGFSNNGKYFATGGQ DGRVFLYEDNNFLPTASLLARSDYISTIRFSKNNEFIAISGFDKFTMIFDILRHKIAFNF VTSDVVEDSCFFDNDEKLLLVLRNNSSIIFSLKEGKILSQEYLFAFWPTCIALDEEENYA LIGTRSDILYIISLKDNSKVMEIKTEHAGIASIAFCNDFLYIGCIDGALLIFDYNEGKED LKEALAIKDYKKAREAIEKNVFLSINPLTKIFDEVWPDILNQAIALLNQDEIDKAIEITA PFVVSQSKKNEFDFYLSQKDGVKTFLELIDKKDYTKAYEMLKTTKFLTKTQAYEKLENIW NKAFFNAKKLLIENAKLNQKLAEQYLAPFENTPKKELIIQLLRNSDVFAKADNLIKNQNF KEYFSLTFQFSFLRETDLYKKVLLLGEKMLTNLIDLEKNFQYQEAKKIAETLLVFPNLKR SANEKIVLMQQKENFLEAIQQKDIKKVYAMVDDIEILRSMRQFKDFTKDFLKLYEEAKPY AYVGNAQHIRVIFGEYMEISYWIDKIASLMKIAYLKQINNALNEIQVNWLITIKRYYERF GKSAEIIKLLQNHPSKAILDEFEGEGESDGYRYHSFVDNIVIYLVQKES >gi|197325098|gb|DS990368.1| GENE 102 99746 - 100849 1489 367 aa, chain - ## HITS:1 COG:Cj0633 KEGG:ns NR:ns ## COG: Cj0633 COG2861 # Protein_GI_number: 15791993 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 77 364 86 357 360 148 38.0 2e-35 MNKLNPITIGIIALLLVLLVFNFIPNEEPKPTQNKTPKAVETKPNAQDTKDTKDTKDTKD TKDTKDTKDTKDTKDTKDTKEINNVLIQKNLDFLKENLSTPKQQDSQPKIKSSPTIPQTT PIQPKEQETNTAKTTPICQKTKPQLAIIIDDVSNYEQYRRLQEIPYKITPSFFPKTIASK NTPKIAATAPFYMVHLPLEALNFYQKEHLWLFSDDSKQTIQDRIQAIKKDFPNLTYINNH TGSKFTQNLQAMQNLLTILNENNITFVDSRTTPKTKTALYYKNNPTKSLNPCQNTPFLER NVFLDNELDISKITQNLIKAIETAKIKGYAIAIGHPHKETILALKNASEYLQKSGIEAVY INELIIP >gi|197325098|gb|DS990368.1| GENE 103 100856 - 101092 420 78 aa, chain - ## HITS:1 COG:HP0332 KEGG:ns NR:ns ## COG: HP0332 COG0851 # Protein_GI_number: 15644960 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation topological specificity factor # Organism: Helicobacter pylori 26695 # 1 78 1 77 77 68 59.0 3e-12 MSLFEKFFGNKTSSAQEAKNRLTLMLAHERTINVPYMEAMKKEILEVIKKYTKAQKIDIK TDSNQNFNTLEVEILLEK >gi|197325098|gb|DS990368.1| GENE 104 101089 - 101745 886 218 aa, chain - ## HITS:1 COG:jhp0314 KEGG:ns NR:ns ## COG: jhp0314 COG2894 # Protein_GI_number: 15611382 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation inhibitor-activating ATPase # Organism: Helicobacter pylori J99 # 1 216 48 263 268 294 70.0 9e-80 MILGLENRIVYDIVNVMEGECNLSQALINDKRAKNLYFLPASQSKDKTILDKEKVAKLIE KLKEEFEYILLDSPAGIEGGFEHSIFLADEALIVSTPEVSSVRDADRVIGIIDAKSKKAQ MGQEVKKHIIINRLKPEMAEKGEMLSVDDVLKILSLPLIGVIPEDEKIVSSTNTGEPVIY GNSLSSQAYRNITRRILGEEVPYLELKAKKGFFGRLFS >gi|197325098|gb|DS990368.1| GENE 105 102139 - 102753 430 204 aa, chain - ## HITS:1 COG:jhp1243 KEGG:ns NR:ns ## COG: jhp1243 COG0164 # Protein_GI_number: 15612308 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Helicobacter pylori J99 # 19 194 9 193 209 146 47.0 3e-35 MKPNSLFTLPLHNPLEICGIDEAGRGCIGGSLFVCGVILGKSFPQSLLSQLQDSKKLSPK VRDTLAPQIKQYAQFHLVKKTAQEIDLKGLSLCLKEALQEILTYLKSAHYLFDGNCNFKI QSLQTLIKGDSKVYAISAASILAKNAKDKESMELDLIYPQYGFKSHKGYGTKAHIEAISK FGYCKEHRKSYHLKKLPQTTITLF >gi|197325098|gb|DS990368.1| GENE 106 102740 - 105157 2957 805 aa, chain - ## HITS:1 COG:Cj1073c KEGG:ns NR:ns ## COG: Cj1073c COG0466 # Protein_GI_number: 15792398 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent Lon protease, bacterial type # Organism: Campylobacter jejuni # 1 800 1 788 791 876 59.0 0 MQLERYGTFPKNLPIILEEDIFLYPFMIAPLFINDEESLKAIDLAMQSEDKLIFITAIKS KDEEEGEESFYDVGVIGTIMRRVALPDGRIKILFQGLSRGSIEKLISKSPLIGEIQPIIS KSFDASRIEAILSVLKEKLRTLYNISQNFSQDLLRSINETMDPNRAADLIASATRLKKDQ VYKIFKEDDPEERLLSLIDIILEEIKAQQIQKEIKNKVNFQMEKINKEYFLKEQLKQIQK ELGGENKDTELQEYKQKLEKLKNAMSKNAYKEISKQINKLSRMHQDSADANLLQNYIELV LDIPFGAYSKKSLKIEEVQKQLDKDHYGLKKPKERIAEYFAVRELLALRGKSNNENKGTI LCFYGPPGVGKTSLANSIATALKRKLIRIALGGLEDVNELRGHRRTYIGAMPGRIVQGLI DAKEMNPVIVLDEIDKMHHSFRGDPSSVLLEILDPEQNKEFRDYYTNFDLDLSQVIFIAT ANDISLIPAPLRDRMEFININSYTPYQKEQIAKKYLIPQEIKKHGLQNNEISFNTQAIKN LVEKYTREAGVRNLRRKIAEILRKVAKEILQNPQQKITITSKNLPQYLDKIVFEYENANA KNEVGLVNGLAWTSVGGDVLKIEALKIKGKGGLHLTGNLGDVMKESAKIAYSYIKSLIDN QKLKINPSLIPLSPKEKAEKISVDASEIYNRFDVHLHVPEGATPKDGPSAGIAIASAIAS VFSNRPILSSIAMTGELTLRGKVLAIGGLQEKLTAALKSGVKIALIPKKNFERDLDEIPE EVKEGLEIHPVENFQEVLKYIFEAK >gi|197325098|gb|DS990368.1| GENE 107 105167 - 105604 590 145 aa, chain - ## HITS:1 COG:jhp1292 KEGG:ns NR:ns ## COG: jhp1292 COG4105 # Protein_GI_number: 15612357 # Func_class: R General function prediction only # Function: DNA uptake lipoprotein # Organism: Helicobacter pylori J99 # 1 145 77 220 220 124 44.0 5e-29 MLILGRAHMQEEEYLLAIFYFDEYTKRFGDGQNIDFINFLKLQANYFAFAKQFRDQQLLE KSIKDAQDFGQKYPYSRYRPIVDTMLLKLELANLSLNKEIIKLYDKKDKPQAAEYYQQKI NENAWVKDIFYQEAGSPWYQKIFEW >gi|197325098|gb|DS990368.1| GENE 108 106142 - 106579 521 145 aa, chain + ## HITS:1 COG:HP1377 KEGG:ns NR:ns ## COG: HP1377 COG1699 # Protein_GI_number: 15645987 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori 26695 # 1 133 18 140 146 112 48.0 3e-25 MEFAVKSPILGFEHIQKMKLEKISKDDDTFMQLKSCENDGISFTLVNPYSMRSDYEFEIP SPIKALLELKGKTNIDPQNSKLVTLNIVCIREPIEESSVNFLAPVLFNFENLTMAQVVLE NFKYENFGLSEPISKFFDFSKTNQE >gi|197325098|gb|DS990368.1| GENE 109 106576 - 107316 876 246 aa, chain + ## HITS:1 COG:Cj1076 KEGG:ns NR:ns ## COG: Cj1076 COG0345 # Protein_GI_number: 15792401 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Campylobacter jejuni # 4 242 2 240 243 142 36.0 4e-34 MKSLILLGYGKMARALALGLKDKVHLQVAGRNPQKIREFCNDLQLTPLLQKDNLIEVQDQ EILLCVKPYALQSFQFVGKAKCVYSILNATTLEILRSKIQSEGFIRAMPNVAASVGKSIT SLCGDEAYKQRAFEIFNAIGKSVWIEEKTMAVAAALGGCAPAFLAIVAESLMDAGVTNGL TRNESKEIVEGLFEGFGALLQTTHPTLLKESVMSPGGSTAQGVASLEKNALRNAFFEAVM ASKNFA >gi|197325098|gb|DS990368.1| GENE 110 107313 - 108209 748 298 aa, chain + ## HITS:1 COG:Cj0166 KEGG:ns NR:ns ## COG: Cj0166 COG0324 # Protein_GI_number: 15791553 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Campylobacter jejuni # 5 276 6 265 289 207 42.0 2e-53 MKIFAILGGSGSGKTALSLEVAQKKQCAILSLDSLSVYQEIDLISAKPTKKERAGIPHFG IDILSPTQSHNVQIFIQEYQKAKEFCQNNQQNLLIVGGSSFYLKMLLEGLSDFALEEKQR SEILEKINTLGDLEKQYSFLESIDKQWAIRIKPTDYYRIQRALEIYFATSKIPSLYFKEN PPIPIIENCEIYEIVWQRDFLRQRIKQRTRQMLENGAIDEVCGLLKKYGKTYQWAKSIGI KEIVEFLEGKFSQETLEELISTHTAQLAKRQRTFNKTQFKEHFCGEVREVLMQIQKNL >gi|197325098|gb|DS990368.1| GENE 111 108331 - 109686 1346 451 aa, chain + ## HITS:1 COG:aq_1031 KEGG:ns NR:ns ## COG: aq_1031 COG1921 # Protein_GI_number: 15606324 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Aquifex aeolicus # 1 445 1 449 452 308 40.0 2e-83 MENILRHIPKTDKLLKAKALEECNGVLLKKIIIEFLDIYRNNLLEGGARMEFEECVECIK EIYRKRTKKSLKSLVNATGIIVHTNLGRSVFSNEILEEIKPLLCAYNNLEYDLKEGVRSE RYIHLKNLFAMLLGVEDVLVVNNNAAAVFLIFNTFAKNKEVIVSRGELIEIGGSFRIPRV MEDSGAILKEVGTTNKTYLKDYQEAINPNTAMLFKAHKSNYEIAGFSKEVSYQELIALAQ ERGLLDYYDLGSGYFGLKGLDILKKYEMPLEEIASLNPSLVSFSGDKLLGGAQAGIIFGK KCYIDQLKQNQLLRMLRVDKFTLAVLEATLMAYLQEKYEKIPTYKMLLQTKEILKKKAEK LLGLVQESFKPVILETKGYSGGGAMPNKALESFGIALSFKDEKQLEQLLREKGVIARIEN GKVILDVMALLEGDERIIQKALLEIEESYAR >gi|197325098|gb|DS990368.1| GENE 112 109676 - 111493 1848 605 aa, chain + ## HITS:1 COG:Cj1379 KEGG:ns NR:ns ## COG: Cj1379 COG3276 # Protein_GI_number: 15792702 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Selenocysteine-specific translation elongation factor # Organism: Campylobacter jejuni # 4 602 3 598 601 424 40.0 1e-118 MQDNLILGVMGHIDHGKTSLVRALNGFWGDERKDEKERGITLDLSFSNLSNGERNIAFID VPGHEKLVKNMIAGAFGLDYGMLVIAANDGIMPQTLEHLRIASLLGISDFVVAISKVDLA DKAEVVVLKEQIQNLFSQFNTLKYQIFEVSFYDEASVENLKQALFELPKKIHRDLGFFRY YIDRIFVIKGSGCVVSGTLLDGNLTCDQKVWCCNLDRLIGIKNIQCHGEFVNEAKSGQRV ALNLSGVSHHELKRGDLLTKKGYLRGFDRIEVALEMFVEIPHNAEVNFFIGALKMPCRVL FLDKNYATLKLKNPVYSIFNERFILRDDKQTLGGGRVLSPIVDPMKKSQKLEFLKMLDEG NLKGAFEILLQAHKKGFGLISASQRFGISQIEALKIAKEIPQCFVSEKNLVVYPKKAEEL LREIILVILQKNPNALLSSALLCQKQSWVANDFAQSLLDKLLKEGVLQKNDSFYVSPKAK IGKIEDYLYRTIYALLQNQGFEPMAPYNLYDSLDIDRKSGDEVFKKLTREKKIVRLNHKL FICTQSLTQLLGAMREIIKNEGYLDLNNFKVHFNLSRKYLIAYLDYLDSFGDILNTNGKR TLKSC >gi|197325098|gb|DS990368.1| GENE 113 111487 - 112482 1045 331 aa, chain + ## HITS:1 COG:no KEGG:WS0836 NR:ns ## KEGG: WS0836 # Name: nifS # Def: NifS protein # Organism: W.succinogenes # Pathway: not_defined # 2 326 4 342 346 157 39.0 8e-37 MLDYLQNPPICAPLMQKLIAQDRPNYLAITPSAGQKISQENKELSHFLGCEMARPFSFNL ESFYFLLSKLSQKYKVALVLSSHQMLYSAYLALPNKEAIIPIIPDKKSGQIDVKNALEKG ADCFLIPYLNEDILTLNLPLDETLKDVFTLWDISYALALGLPLPKNANLLIANGENLGLM RPFGIMAGKDILDLGLYLEIENLYGVFLEAIKLQGTPKENQAQLFFEILKKELQEDCYCF FETPSNTLPLGLKGIKARNLIQSLIFDDISLINGQECLFGFAKPSFVLQLMGYSENQARE LLSLSFKEKIEIDILAQKIIQKYRQIKSLQG >gi|197325098|gb|DS990368.1| GENE 114 112485 - 113711 1420 408 aa, chain + ## HITS:1 COG:Cj0857c KEGG:ns NR:ns ## COG: Cj0857c COG0303 # Protein_GI_number: 15792195 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Campylobacter jejuni # 8 393 6 384 386 226 36.0 9e-59 MQAVSLQEAIKILQKAGSSFAKNKEFLALLESQGRFLAQDIVSQKALPSFDNAAMDGYAI RAEDMGKTAKIKASIFAGDCKEIKLECGECAKIMTGAKLPKNANIVVPFEAIEGGLNNQE SITIPQGLKVGDNIRQVGEEIPLGKQIFEVGDEIDENVLALLASQGISYVSAFRELRIGV FSGGNELKEPWELAENYQIYNSNTTMILGILKSFGFKASYGGISKDNKEDLLQVLNMPFD IIFTTGGASKGEADFMQEVLVQAGAEILISGVQIKPGKPIMVARLERKFIVALPGNPLAG AVLLRFLIVPFLRNLAGANAHFPQALMVKNIESFRLKKRMDAMLGSLSVEGFLLTQKGKY TSGQILPLCQSNAIALLNEECTQIEAGEWIKVLPYSMIWGKVECDYIN >gi|197325098|gb|DS990368.1| GENE 115 113708 - 114391 722 227 aa, chain - ## HITS:1 COG:Cj0381c KEGG:ns NR:ns ## COG: Cj0381c COG0284 # Protein_GI_number: 15791748 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Campylobacter jejuni # 1 227 1 226 279 263 55.0 2e-70 MKLCIALDMPNKKDNLTLLSNLKTSQEIWVKVGLRSFIRDGKEFLEQIKTINPFKIFLDL KLYDIPNTMGDSIDEIAKLGVDMITIHASSGREAMCEVTKRLQKVQNPPLVMAVTVLTSF QQESFFEIYHSNLETQVLEFAKMAYESGINGVVCSCLESRVIKEKINSHFLTLTPAIRPF GEDNGDQKRTATLQDAKAAMSDFIVVGRPIYKASNPQEVIDKILQAL >gi|197325098|gb|DS990368.1| GENE 116 114388 - 114942 607 184 aa, chain - ## HITS:1 COG:jhp0001 KEGG:ns NR:ns ## COG: jhp0001 COG0781 # Protein_GI_number: 15611072 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Helicobacter pylori J99 # 1 132 1 132 138 122 49.0 4e-28 MATRSHVREVVVQLLYAYGSGNDAIFKFADEIFGEHKIKNKQKDFANLLFNGVIENLESL DLRIAHQLESWDFTKIGDMEKAILRLGVYEIAFNNLDKAIAINEALELAKTFGNEASAKF INGVLDNIAKNLQIPIHTIQESMQNIKQTTNNTAKSTNLESKTPKAKNQTNSTKKQNTPK KGKV >gi|197325098|gb|DS990368.1| GENE 117 114943 - 115413 681 156 aa, chain - ## HITS:1 COG:Cj0383c KEGG:ns NR:ns ## COG: Cj0383c COG0054 # Protein_GI_number: 15791750 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Campylobacter jejuni # 1 154 1 154 154 223 68.0 9e-59 MQIIEGDLSLLGDEKIAIISSRFNHLITDRLIEGAKDCFLRHGGIDENLTHILVPGAFEI PFALEKVLAQGNYDGVCCLGAIIRGSTPHFDYVSAEATKGIANVTIRYGAAVTFGVLTTD TIEQAIERAGTKAGNKGFEAMSSLIELINLYRKIGA >gi|197325098|gb|DS990368.1| GENE 118 115413 - 116219 931 268 aa, chain - ## HITS:1 COG:jhp0003 KEGG:ns NR:ns ## COG: jhp0003 COG2877 # Protein_GI_number: 15611074 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase # Organism: Helicobacter pylori J99 # 2 263 12 275 276 374 70.0 1e-103 MIFIAGPCVIENDEILEEIAESLKPLATNPDIDFYFKASFDKANRTSLDSYRGPGLEKGL ESLARIKKKFGYKLLTDIHETHQVKLAARVVDILQIPAFLCRQTDLIVEVAKSKAIVNIK KGQFMNPADMRYSVLKAIKTRGGEEATYQESQKHQILLTERGSSFGYGNLVVDMRSLVIM REFAPVIFDATHAVQMPGAADGKSGGDSRFAPILARAASAVGIDGLFAEVHTNPKIALSD GPNMLTPQELLKLSNQLLEINHLIKKDL >gi|197325098|gb|DS990368.1| GENE 119 116222 - 116857 640 211 aa, chain - ## HITS:1 COG:Cj0237 KEGG:ns NR:ns ## COG: Cj0237 COG0288 # Protein_GI_number: 15791609 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Campylobacter jejuni # 6 210 1 206 211 257 56.0 1e-68 MAQSSIETLFEGAIKFKEENFLAYKELFENLKEGQNPHTLFVGCADSRVVPNLITNTLPG ELFVVRNIANIVPPYRKAEEYLATTSAIEYALEELQVENIIICGHSHCGGCAALYEEDHF TKMPNVQNWLKLIEPVKKQVLALNPQNKAMRAYLTEQINIEKQIMNLFTYPNVKEKYLAR TLHIYGWHYIIESGEVYSYDFKKHEFNLLKG >gi|197325098|gb|DS990368.1| GENE 120 116867 - 117637 855 256 aa, chain - ## HITS:1 COG:aq_1002 KEGG:ns NR:ns ## COG: aq_1002 COG1360 # Protein_GI_number: 15606305 # Func_class: N Cell motility # Function: Flagellar motor protein # Organism: Aquifex aeolicus # 10 238 8 231 235 89 30.0 4e-18 MAKEKCPPCECPQGVPLWLGTYGDMVTLILTFFILLLSMATFTTEKIDEAIGSLEGTFAV LENGVKTQINPPAPILATPIEAQQEMEDATNIFASLITEYNEINKLANGPAVEFEEAEEG VIIRIPESLLFESGSATLTNSSGLAFLKRLTLEFDKLPETALIKAIGHTDNVPMRENPIF ADNLELSIARGVNVAELIITEGISKERVLGGGEGEFSPIASNKIPELRAKNRRVDLYIYS IGEDFSNPTKNPTKSN >gi|197325098|gb|DS990368.1| GENE 121 117735 - 118328 574 197 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|154175107|ref|YP_001408238.1| ribosomal protein L22 [Campylobacter curvus 525.92] # 1 197 1 195 199 225 57 3e-57 MQTIIDFVVNFVGDLGYFGIFFMMFLESSFIPFPSEVVMIPAGYLAYQGEMNFFVAIFFG ILGSLAGALLNYYLALFFGREILIKYGKYVFFDEKTMKKMEDFFAKHGHISTFSGRLIPV VRQYISLPAGLGKMNLAVFCFYTSLGAGIWSFILVALGYFLGQNEDLLKEYLHWITLALV IGVALGIAIYVAYQKKK >gi|197325098|gb|DS990368.1| GENE 122 118348 - 120096 1855 582 aa, chain - ## HITS:1 COG:Cj0522 KEGG:ns NR:ns ## COG: Cj0522 COG1283 # Protein_GI_number: 15791883 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/phosphate symporter # Organism: Campylobacter jejuni # 33 199 1 167 167 206 70.0 9e-53 MQNLRRYALILLIIALIYFLIVFPEVAKILAGVAILLVGMTNLSNGFKTFSGGLLEKILK KSTDTRFKSITFGVITTILMQSSTLVSIISISFLSAGLITLAQGIGIVFGANLGNSAGSW LIVGLTSINISILAIPLIVCGTLLGFQKDSLLKGIGLIFMGIGFFFLGVDYIKNGFEAYK EVMDLSRFNFEGFKGVLIFVGLGAITTGIVQSSHATLAIIIAALLSGQIGFENALAATLG TSVGGVVTAVVASFSANIEGKKLAMANCIFNFTIALIVIALFPYFVDLVNLIANYLGIPQ DNLALKTALFHTLFNLVAVLFISLFIKQIVFILDKIIKAPKDRDMDAPLFLNQNIVSYPD TAIEALQKESVHLYNNAYAMIAHTIGFNRSDIRGNESFDSIIQTKKWFSGNVDLDYLYKR KIKVLFDAIMEFSTKAQTYVTEEEKLAKIFAFKIASRNIAEATKNLKIIQTNMKVYSSSS NKALAEQYNTMRKDLGELLRSVEELKLMDDSNAYLILSQLKNAKNLLKEKDYHTLHNVET LITQEKISVTNGTSILNDSAFIAQIANQLIEAVEIIFAKETA >gi|197325098|gb|DS990368.1| GENE 123 120268 - 121482 1481 404 aa, chain + ## HITS:1 COG:BS_yumB KEGG:ns NR:ns ## COG: BS_yumB COG1252 # Protein_GI_number: 16080263 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Bacillus subtilis # 1 400 1 405 406 296 39.0 5e-80 MEQNTKKILIIGGGYGGLKVALGLQRKLKIKADVTLISKHDYHYQTTLLHKVAIGTLSAR KARIYYRKILNPQKVNFIKDKIIQLCPKENKVIGNGGEYFYDYLVIGLGFKPDSFGIKGV EEYTYKLSSLNRALKLAKNIENKFKDFIHTKNPKDLCVIVCGSGFTGIEFAAELATQLDE LCLICGIDRKIPKIICIGRSPHILPVFNPKLVNIAEEKLKKLGVEIVNGGNIKEIQKNKV LVEKEGKMIEFEGNTIIWSAGVRGSDIVEKSEIPNKKGRIKVNSQLQCEEFPNIYVVGDC AIAANKDAIHAPTAQLSAQMGDYLAELLCAKLEGREFKKPFKFNHRGTVCSIGHTDGVGI VYHKNVNGELAAFMKNTIENKWLFSIGGFEMVFKKGQFRYRTSN >gi|197325098|gb|DS990368.1| GENE 124 121655 - 122476 677 273 aa, chain - ## HITS:1 COG:jhp1313 KEGG:ns NR:ns ## COG: jhp1313 COG0812 # Protein_GI_number: 15612378 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Helicobacter pylori J99 # 1 273 1 259 259 239 47.0 3e-63 MIHKTIDFSIYSSIKIGPTLQVSLIQNPQDYYEILQHTITPKIIGAANNLLVSPNAKNLI MLDKNFSYIKDCGDFLEVGALTPSGKLFSYAKKHNLAGFEILSGLPGSIGGIIKMNAGLK EYEIKSSLLGILSLKNSQSLEFIPTHSLNLSYRSSTIKTLIFAGIFKKQSGFNPKLTDLF AKMRSNQPKEPSFGSCFKNPPNDFAGRLIESVGLKGVAFGSNKSLMFSPKHANFLVNLGK ASFEESLELIELARNAVFEQHKITLQNEVQILK >gi|197325098|gb|DS990368.1| GENE 125 122476 - 122727 310 83 aa, chain - ## HITS:1 COG:HP1419 KEGG:ns NR:ns ## COG: HP1419 COG1987 # Protein_GI_number: 15646028 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliQ # Organism: Helicobacter pylori 26695 # 1 82 6 87 88 64 73.0 4e-11 MNLAIETYKITLILSLPMLLVGLVVGLLISIFQATTQINEMTLTFVPKILAVIVVIIFTM PWMLNMLIDFTARIFNMMPNFIF >gi|197325098|gb|DS990368.1| GENE 126 122758 - 123579 1249 273 aa, chain - ## HITS:1 COG:jhp0181 KEGG:ns NR:ns ## COG: jhp0181 COG0623 # Protein_GI_number: 15611251 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Helicobacter pylori J99 # 3 270 4 270 275 380 71.0 1e-105 MIMNGKKGLIVGVANNKSIAYGITKACKAQGATIGLTYMNEAIQKRVLPIAEEIGDSQYV YELDVSKKEHFANLREQIKKDFGKLDFLVHSVAFAPKEALDGSFLETSKEAFNVAMEVSV YSLIELCRELEPILAPDASILTLSYLGSVKHVAHYNVMGVAKAALESSVRYLAHDLGKKG IRVNAISAGPIRTLAASGIGDFKFILKWNEANAPLGKNVTIEEVGNSAMYLLSPLSSAVT GEIHYVDCGYNIMGMCAVEEIDGKASLVWDRVK >gi|197325098|gb|DS990368.1| GENE 127 123589 - 124293 722 234 aa, chain - ## HITS:1 COG:HP0194 KEGG:ns NR:ns ## COG: HP0194 COG0149 # Protein_GI_number: 15644823 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Helicobacter pylori 26695 # 2 230 3 231 234 223 52.0 3e-58 MKIIASNFKTNHTRKSTQVFCENLKNFLQTQNFPHKIVIFPPATALLEDSFTHFRIGAQN AYFTENGSFTGEIGLEQLNEFKIQTLLIGHSERREILGESQAMCAKKFSFFKERKFEIFY CIGETLDIKKQGLQSTLDFLDSQLEGIDLNYPNLIFAYEPIWAIGTGVSASLEEITTIHT HLKQKLGKISLLYGGSVKPNNVKEILQIDSVDGVLVGSSSWEISSFLEILKNSL >gi|197325098|gb|DS990368.1| GENE 128 124448 - 125530 1210 360 aa, chain + ## HITS:1 COG:Cj0557c KEGG:ns NR:ns ## COG: Cj0557c COG1289 # Protein_GI_number: 15791918 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 12 352 12 354 361 295 48.0 1e-79 MSFFKKITDEAKLIFTWNKSDRLWQMPFFAGLGVAIILFVAAYFKRPDLGLVAIIGANIF LYVPDTPIYHKMILSMSCAFGITTAFTLGLVGQIFPSFIPLIVFVVTMVSAQVVRYFSIG APGFFFFTFATLLGAFIPFKLEDYFMAIGLVAIGAMVANVMVLLYSLSVIYLFKHTPKPI PKVGDFGFGVIVVDPIIIAFFVALAMVLQNVLELERGYWVGVSCAAVLTAITFKQIWIKQ TQRILGTILGVSFAYILLHFEFSPIEFALLMMSLMFFSELIVVRNYALAMVFLTPYSTYL AEVGSFMNYNPDIIIQARVLDIILGSIIGLIGGAVMHWGALRNVLERITHKIVYKWVGNE >gi|197325098|gb|DS990368.1| GENE 129 126780 - 128123 1556 447 aa, chain - ## HITS:1 COG:no KEGG:ICDCCJ_1296 NR:ns ## KEGG: ICDCCJ_1296 # Name: not_defined # Def: vacuolating cytotoxin precursor, putative # Organism: C.jejuni_ICDCCJ07001 # Pathway: not_defined # 46 383 28 356 555 86 27.0 2e-15 MKLSLIASRAIFGLGVLGSVSICAQELTTQTQEINAGQVSQNNSPITIYDESQLKDYFDI EIDSSRDAANLVFKEGYKDTNLQINSALYEFVPKGVNRENTFVTIDLGNGVLDLTNTRNI VGGDKTSYLINADITASQINMTDMNLQYFRQESTLSGNVKLTGTQLPTDSDGFGSSVTIA SSGLGDGDYNGGLTIWGNLEANKTRFEGVGNGSLNFDIKGNVNIKESNFSVISTSFNNLF LDRFVFASANSFNSDVTTSNTAGASIINSIYDIVSDENLANQFIEIERSAYLTPMDVGDF VNYKLSVEKNNGKEYLIISGGVNSTKINSAKEILTFEKEHLEKIIQIEDLENSQDPVKKS ILEDLQAQIAKKEEILNKINSSGEESLTTEDKMNAMGIEITNTTKHIFEKVSNLKGSQAD NYKLLLTTGIMGGATNTAKTADSMQAS >gi|197325098|gb|DS990368.1| GENE 130 128327 - 128890 602 187 aa, chain - ## HITS:1 COG:Cj1292 KEGG:ns NR:ns ## COG: Cj1292 COG0717 # Protein_GI_number: 15792615 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidine deaminase # Organism: Campylobacter jejuni # 1 186 1 186 186 331 84.0 4e-91 MGLKEDAWIRKMAIDHKMIEPFCENQVGKGVVSYGLSSYGYDIRVSNEFKIFTNINAMVV DPKNFDSANVVDFVGDVCIVPPNSFALARTIEYFRIPRNTLAICLGKSTYARCGIIVNVT PFEPEFEGHITIEISNTTPLPAKIYANEGIAQVLFLEGDAPCEISYKDKKGKYQSQTGIT LPRILKN >gi|197325098|gb|DS990368.1| GENE 131 128999 - 129472 518 157 aa, chain + ## HITS:1 COG:Cj1291c KEGG:ns NR:ns ## COG: Cj1291c COG0511 # Protein_GI_number: 15792614 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Campylobacter jejuni # 1 157 1 151 151 107 45.0 6e-24 MDFKEIKELIKIFDSSSLSALSITQENSKIKLEKGVKSTQIVESQNTQILSPIQIPQNAP QVEVAAPASSAQNTKAIQGETINSPMVGTFYRCPSPDAPAYVNVGDKVKKGQTLGIIEAM KIMNEIEAEFDCMIKEIIPNDAQPVEYNSPLFVVEKI >gi|197325098|gb|DS990368.1| GENE 132 129472 - 130839 1381 455 aa, chain + ## HITS:1 COG:HP0370 KEGG:ns NR:ns ## COG: HP0370 COG0439 # Protein_GI_number: 15644998 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Helicobacter pylori 26695 # 7 446 16 456 458 634 74.0 0 MPLTKEINTILIANRGEIALRAIRTIKEMGKKAIAVYSTADKDAHYLDLADAKICIGGDK SSESYLNIPAIISAAELFNADAIFPGYGFLSENQNFVEICNYHNIEFIGPNPEVMALMSD KSKAKEVMKNAGVPVIPGSDGAVKSKEEALELAKEIGYPVILKAAAGGGGRGMRIVQNEE NMFNAYLAAESEAISAFGDGTIYMEKFIDKPKHIEVQILADKYGNVLHVGERDCSLQRRH QKLIEESPAPTLEAETRKKLLETAITATKAIKYVGAGTYEFLLDNNQNFYFMEMNTRLQV EHPVSELVSGLDIIELMIQIAEGKKLPKQEEVDFKGCAIECRITAEDPVKFYPSAGKITK WIAPGGNNVRIDTHAYAGYVVPMFYDSMIGKLIVWGKTRDEAIARMSRALDEFCVEGIKT TIDFHKKMMKNDDFRRGVVHTKYLEQKMENGTENA >gi|197325098|gb|DS990368.1| GENE 133 130888 - 131640 1077 250 aa, chain + ## HITS:1 COG:Cj0720c KEGG:ns NR:ns ## COG: Cj0720c COG1344 # Protein_GI_number: 15792069 # Func_class: N Cell motility # Function: Flagellin and related hook-associated proteins # Organism: Campylobacter jejuni # 1 249 1 248 249 148 43.0 1e-35 MKIGNTQANESLINLNKAKEDEEKALKKIASPRPIEATDGASLAIANALLAQANSMSQGI RNANDAIGMMQIADGTLSTLSDSAIRMNELSVAMGNPALNSSQRSMIESEAAALTQSMND AVSQATFNGKNVFGGQMDFMTGNGLESINLQSPNTANLSVNNQQSILDFIEDLGMKRADI GAAMNGIQSGIDSNMQTVVNLKAAEGNLLDDDLAENYNELNNAKLRANAALYASSFNAQY LQNRLDALLG >gi|197325098|gb|DS990368.1| GENE 134 132040 - 132225 196 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224417771|ref|ZP_03655777.1| ## NR: gi|224417771|ref|ZP_03655777.1| hypothetical protein HcanM9_00704 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0462 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0462 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 61 1 61 61 110 100.0 5e-23 MIFCQTQMELLSNPNEICVRELKEKSRIIVSISELCGSGKSTLEKCIRKQGFDNFKPHQI A >gi|197325098|gb|DS990368.1| GENE 135 132225 - 133415 1699 396 aa, chain - ## HITS:1 COG:TM1785 KEGG:ns NR:ns ## COG: TM1785 COG4992 # Protein_GI_number: 15644529 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Thermotoga maritima # 13 394 2 383 385 295 43.0 7e-80 MTTHDLKQMDLDYTLHTYARNYTHFVRGKGARLFDNEGKDYIDFGAGIAVCSVGHGNERL ANAICQQAKELIHTSNLYLIEPQAKLAKELIKQSGYDMRVFFANSGAEANEGAIKIARKF GEVNGETKRYQVITLDSSFHGRTISTLKATAQDKMHHYFGPFPDGFVYAKDILDIPNKIS PVTCAVLLELVQGEGGITPFDKAEIQKLAKFLKEKNILLMIDEVQTGIYRSGELFASNYY EITPDVITTAKGLAGGVPIGAVMTSLKDIFSPGDHGSTFGGNFLSTRAALEVLEILKEEK QSGRLEKTISYFTQKLQNLQKSYPEIFIQEVGLGLMRGLRLKDTESFNLFLQKTCENRVL VLKSGKNTARFLPTLTISKEEIDEGFERINHSLKDF >gi|197325098|gb|DS990368.1| GENE 136 133613 - 136219 2191 868 aa, chain + ## HITS:1 COG:RSc2358 KEGG:ns NR:ns ## COG: RSc2358 COG2352 # Protein_GI_number: 17547077 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxylase # Organism: Ralstonia solanacearum # 7 868 83 985 985 392 30.0 1e-108 MGELLEEVAPEIREIFIALKEDKTANYIAKKEVLKKLESKDISKLIKAFTLYYLLLNIVD ERHLLSFNSKKHIGSMIDELKAQKYDEEDIKSVLKKIKFYPVFTAHPTESLRRTFLESYH EMYDDLNLWFGSGDNAAKEHLKYRLNLLWHSHIVRSEKIEVLFELDNLLYFMESSILQSG TNILEEVQNALQEPLKKSPIRLGSWIGGDRDGNPYVTNGVMLEVMKRQHQTIIEHYLKQI DKLSRELSIAQEYANPTQELLESLEEEKEHLDEMAKKLFLQEPFRAKLTCMRQKLQNRIM ALNLPQSALYESKPYIYESPKEFIKDIDMMLESLDKRSGIYLKKLKNLVLLAGFHLMQLD FRQHRDVFWRALAEIFSLLGYVQGDLLLLPKKEQEEILNNALTAPLLDLNALYGKLSKES QELLMAFMNFRWAKDRISDNIIDSCIISMCQGANDLLCVLWFAKQSGLWRKGKKTRIGIA PLFETIGDLENAPVILRELCANPHYAEYLQSCKNNQEIMIGYSDSSKDGGIFTSNYSLRK AINNLIVLEEELRIKFRLFHGRGGSVSRGGGALEDALLSAPDNSVAGFLKTTEQGEVISE KYLNPKKAEFSFASALANLLKKSVYDKYGTNKQVCNRDFESIMQKISEESFKTYRNLVYE TEGFIEYFKSATPIEFIQQLNIGSRPSKRKNTQNVEDLRAIPWVFAWTQNRAIIPAWYGL GSGLELASARFDKEILRNCYKEDLFFKTTIDNISQAFLKVDLEIAKHYNEFVENDDLRKE IWQKIKSEYHLTLKWLLYVRGEETLLETQKHIQKSILLRKSFLTSLNFFQLYLMEQYKNA TYIEQKQRIAKQIITTIVGIAQGIRNTG >gi|197325098|gb|DS990368.1| GENE 137 136263 - 137177 675 304 aa, chain - ## HITS:1 COG:MA0409 KEGG:ns NR:ns ## COG: MA0409 COG0599 # Protein_GI_number: 20089302 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Methanosarcina acetivorans str.C2A # 60 302 3 247 250 248 49.0 1e-65 MPNQTKQDNKESRRDFLKTSSKILLGATALSSLGTHLFSTEIEERNYSLNLSKGENMNTL TPQAKENLQKLFGTSALPKEDLEFFTNYANFAFDEVWQKSNLKENERLLLILASLIALSA KEEFEIMLKAALKSKINPIAIKEIIYQATPYVGIAKVADALVITNKIFKQQEVKLPLESQ STTNQQNRREKGFEIQKNIFGAAIEKSYDSTPAHKKHINEFLSANCFGDYYTRKGLDLAF RELITFVYLISMGGIESQVKAHIQGNLNMGNDKTKLIAVVTALVPYIGYPKSLNALNTID EIAK >gi|197325098|gb|DS990368.1| GENE 138 137126 - 137389 106 87 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224417775|ref|ZP_03655781.1| ## NR: gi|224417775|ref|ZP_03655781.1| hypothetical protein HcanM9_00724 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 87 1 87 87 149 100.0 6e-35 MSKIEIPLVYAEFFNGFQSEIVIALLYSLIKFSFYQDIIRKPSSTKNIKARELRKHCLIG FLETITIRKQRCQIKQNKTTKNRVETF >gi|197325098|gb|DS990368.1| GENE 139 137382 - 137759 285 125 aa, chain - ## HITS:1 COG:SMa0558 KEGG:ns NR:ns ## COG: SMa0558 COG1359 # Protein_GI_number: 16262744 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Sinorhizobium meliloti # 17 108 67 158 170 62 33.0 2e-10 MKKILSIILGVCTLALSKEPLVKISEILIDCQYLKEYKDILQTESKQSVKLENGVLMLYA MQHENNPCQFSIIEAYKDQQSYENHITSPHFQLYKQSILHMIRDLKFIPMKALNPQMALE KNIDE >gi|197325098|gb|DS990368.1| GENE 140 137767 - 138960 982 397 aa, chain - ## HITS:1 COG:YPO2806 KEGG:ns NR:ns ## COG: YPO2806 COG0667 # Protein_GI_number: 16123004 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Yersinia pestis # 60 386 1 320 329 308 48.0 2e-83 MPNQTKQDNKESRRDFLKTSSKILLGATALSSLGTNLFSTEIEERNYSLNLSKGENMNKL PNRILGKGNAALEVSALGLGCMGMSANHGIPPQEKDMIKLLHEAYELGVRYFDTAEIYGP HTNEILLGKAFRDRRDKVIIGTKFGLYYPFGKQQQDSSKKSILRAIDESLKRLNTDYVDL YTQHRVDTDVPIEEVADTMNELIKMGKIRHYGLSEAGANTIRRANKVCAITSIQSHYSMM MREVEDNDVLKTCEELGIGFTAYSPLERGFLGGLMNENTTFHPTLDMRSSFPRFTPEALK ANQSFINYVRELAKNKKIDGKEATTAQIALAWLLAQKPFIMPIPETTKIAHLKQNLDSLK IKFSKEELMQIDSKIKTIKIVGERYPIGSDQAKSVGL >gi|197325098|gb|DS990368.1| GENE 141 139216 - 139650 649 144 aa, chain - ## HITS:1 COG:AGl997 KEGG:ns NR:ns ## COG: AGl997 COG1917 # Protein_GI_number: 15890615 # Func_class: S Function unknown # Function: Uncharacterized conserved protein, contains double-stranded beta-helix domain # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 133 20 149 151 90 38.0 7e-19 MADSQAIIKSGELESFEGNSTIFSGKVKVSMLFNSETWREFGGALVEFEKSSRSAWHTHP AGQTLIVTDGEILTKVPRQKASIAKKGDVISCPPNVRHFHGATDSSKGAHIALTQEKNGK NVTWENLVSDVEYQEALNEARSKQ >gi|197325098|gb|DS990368.1| GENE 142 139815 - 141044 1279 409 aa, chain - ## HITS:1 COG:Cj0035c KEGG:ns NR:ns ## COG: Cj0035c COG0477 # Protein_GI_number: 15791434 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Campylobacter jejuni # 1 400 1 400 400 386 58.0 1e-107 MQKQTSLSGFKKINLIVILAFMSSLAPLSTDMYLPALGEVQKSFATNSFYTQLSLASFFI AFALGQLLYGPLSDIYGRKKPLYIGILLFILSSLACISFDSIYAFIFFRFLEALGGCAGV VIARAIVNDNFELKEAASVFAFMMVISSLAPMLSPGLGSILLDYFSWKSIFAVLFGLGIL LLLYIFLGLNGIKENTTSLKFDSKEILNNYVKIFKDRRFKIYVFSSSFAMATMFAYITGS SYIFIDYYGLSEKSYGILFGINAASFMIFANINARIVRRYSPYYVLPFSFATMFGIALLL AIAGFFDLGFLVFEVLLFFMIGMLGFIIPNTTTLAMARFKQNSGSASAMLGAIQFALAGG ISFIVSFLEANSPLPLALIIAVCLIIACGIYLLLNAKRIKKYKRQRGLK >gi|197325098|gb|DS990368.1| GENE 143 141260 - 142612 1450 450 aa, chain + ## HITS:1 COG:VC0082 KEGG:ns NR:ns ## COG: VC0082 COG1322 # Protein_GI_number: 15640114 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 28 446 56 488 513 117 24.0 3e-26 MEYIILFLFIVVLIVLVWVVSQNRSLRKEIRNLTAHLEILQNLEGEQKQKLEAITQDYYE SLQKNTKLQGQLERLESLQKTNIEQKEKIEEMTILYQNALTKRAEAQTQLESQTKLLNSL EQKYTQSLAALKAEFEQSIQNQSQRMLEQNKLHLMEDSKKILDSIFSPVRESMKEYKESL AANEIKLETNIKNMFAYSQEIGQNADKLAQILKGDKKIRGNFAEIQLKNVLEHSGLIEGE QYKLEAHFMHEGSGYRPDAVVYLDKQKSIIIDSKFPLPNGFSFESLDRSVCQQIAQNLKN RIDELAKKPYANFETYTYEFVLLFIPYQNILDLALSVDNGIYQYAYSKKVYLTTPHTLFM ALKTIEISWVYLESDEKVMKALGDIKNFYHKFEGIVEDFEKLKMLIGKIEKQSDEIETKL TSGRGSLASRFQKLGEVEKKISKKFIGIES >gi|197325098|gb|DS990368.1| GENE 144 142593 - 143363 797 256 aa, chain - ## HITS:1 COG:HP0173 KEGG:ns NR:ns ## COG: HP0173 COG1684 # Protein_GI_number: 15644802 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliR # Organism: Helicobacter pylori 26695 # 1 255 2 255 255 189 49.0 6e-48 MEFLAYLTEGNVTNFLLLLLRFAGIIAFFPFFENQLINTQIKGIFIFWLTILFLPLVTTM PPSNLTILEFIIAGITEIMLGFLASFALQIVFGMISFGGEVISFAMGLTIANAYDPVTGA QKPIVGQLLTLLALMIVLALDYHHLFLYFVGESIKEIPLGGFLYSHNYIIYTIKAFSNLF LIGLTMSFPIIALILLSDIIFGMIMKAHPQFNLLAIGFPVKIAVAFAVLIVIIPAIMIHF KREFLSAIDALTILFQ >gi|197325098|gb|DS990368.1| GENE 145 143371 - 144012 241 213 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 2 206 4 216 223 97 31 1e-18 MLLEAKNLSFGYEKPIIENLNFQAKEGEIISIMGVSGSGKSTLLHLLSSFLKPQKGEVSL FNLDIYSLPQKELLALRRKKIGIIFQSHYLFLGFSAYENLQVASLLSGEKIDKSLLELFG IEQVLDHNIGTLSGGQQQRLSIARILTKKPQIIFADEPTGNLDRETAMNVMEALFSYVRS NHSLLIFVTHDPLLAHKASRAYKLENTTLKTLE >gi|197325098|gb|DS990368.1| GENE 146 144022 - 145089 427 355 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 355 1 280 283 169 34 3e-40 MAEISAQLVKQLREMTDAGMMDCKKALVETNGDLEKAVEYLREKGLSKAAKKADRVAAEG SISVQVSPDFKKASMVEINSETDFVAKNDGFKELSAKTIAMVQDSNVSSAEELHTLNLDG TKFEEYLKTQIAKIGENIVVRRIAKVEAKGSGIVNAYVHSNGRIGVIIALKCQKEENAAK LADLTKNLCMHAAAMKPQVISYHSFDMDFIKSEKTALIAELEKENEELKRLGKPLHKIPQ YISQLELTDEIIAKQEEALKADLKAQGKPEAIWDKILPGQIERFKADSTLLDQRLTLLGQ FFVMDDKKTIAQVLAEKGKELGDSIEVVEYVRFELGEGIEKQECNFADEVAAQLG >gi|197325098|gb|DS990368.1| GENE 147 145093 - 145893 1363 266 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|224417784|ref|ZP_03655790.1| 30S ribosomal protein S2 [Helicobacter canadensis MIT 98-5491] # 1 266 1 266 266 529 100 1e-149 MVTMKDLLECGVHFGHQTRRWNPKMKKFIFGVRKNIHIIDLQKTLRYFRYTYNIVRDAAA EGKTIMFVGTKKQASETLKQYAESVNAPYVNYRWLGGMLTNFSTIRKSIRKLEIIEEMES SGQIDLLTKKEKLMIQRKKEKLTQYLGGVRQLKKAPDMIFVIDAAKEKIAVAEARRLGIP VVAPLDTNCDPDMVDYPIPGNDDAIRSIQLFCKEIAEAITEGRAIAGGEIPENNEVSEPA SEKEKQEVIEEAMKEEDFTENTENKE >gi|197325098|gb|DS990368.1| GENE 148 146120 - 146986 1006 288 aa, chain - ## HITS:1 COG:MT1720 KEGG:ns NR:ns ## COG: MT1720 COG3221 # Protein_GI_number: 15841137 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Mycobacterium tuberculosis CDC1551 # 4 285 6 270 274 214 40.0 1e-55 MKNILVGAVAYAPQIVPIWDTIRDYANDYFGGKIRLDYVLFSNYERQVEWLINKKIDIAW NTNVAYIRSKFATKDNVEAILMRDTDIGFKSIFVSQEKISNLHSLKGKKFGLGSLDSAQA AIMPLFYLQKAGLKIQESLAQNLSTLQTSNEAVSVIRYNSDVGKHGDTGRSEFDVLEAIK AGILDAGAIGSTTWARILQEGTYPEISSFYASEDYCHCNFTTLKGFDEDLKNTFVSMMLS QNTLKNDPQISQMMKLEGLNQWVVCDQQILSGYDHIIQAMQEQNLINL >gi|197325098|gb|DS990368.1| GENE 149 146990 - 148123 1236 377 aa, chain - ## HITS:1 COG:MT1719 KEGG:ns NR:ns ## COG: MT1719 COG1960 # Protein_GI_number: 15841136 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Mycobacterium tuberculosis CDC1551 # 22 374 17 368 373 166 33.0 1e-40 MPTLENLEEKIQKLGEQFILPYTKEIDQEARFPKEAYEALKQQGFMGLLVPKEYGGLQGN NLDHAEVCYNLARFNASTALCYMMHNVATACVSHYGTAHQKSLYLPKIAKGEATFALAYS ESGSGTHFVNPDITESQKGEKRILEGRKSFVTSAQQANYYLTYTNSCKLQGKKNNWIVPS DHPSLTHEEGVWNGFGMRGNVSKPVQYNQVELEVADCLLGSEGDGENQINLVAMYFVTGL GAVYSGVGMAAYECALQHCLTRKYSDGKDLADNELVRIHLAELYTKTQSQIALVREAARA FDSGASDAPMKIFACRINTTHLVMEICELAMRLGGGKAYSKHLPLEQYLRDAMASQVMAP SLDVLKIWLGNAITNKG >gi|197325098|gb|DS990368.1| GENE 150 148138 - 149325 1154 395 aa, chain - ## HITS:1 COG:no KEGG:HH1512 NR:ns ## KEGG: HH1512 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 4 395 16 410 410 541 70.0 1e-152 MQQKSCIFMGEIQTGPLFFMRLENAFLLSQNGDIIEIISQYDNLENDLIAWCRFKGELFL KKIPLHNENNSSFAYIMQKESPTRFATFDPNSMLSPPHQGLAPSGVSIELASPQYHFPLN NKNEIYAGNMEQLYEEAKKAQWNATTDIQWSEIPTFEPKLEFAIAQIMTYLTENEFSALY IPSRFLAQISPFFTAAPLVLSSIIGDEGRHIESFIKRANATGLGVQYSTLTTQQSLYSLW EEKDYFKSSFLLHIMGEGTFIDLLKFLENCFENLGDLQSAKLLNLARRDEIRHVAYGMNH IKNAIAQNPTKIEILKEAVFRRKNYLDNQSDESSLLLESLAILYAKEEKKISHGFEAVVN LKQKMEKNRTKRLIECGIDEELARELSRSHTPNFM >gi|197325098|gb|DS990368.1| GENE 151 149454 - 150299 794 281 aa, chain - ## HITS:1 COG:jhp0006 KEGG:ns NR:ns ## COG: jhp0006 COG0414 # Protein_GI_number: 15611077 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate synthetase # Organism: Helicobacter pylori J99 # 14 281 10 276 276 259 50.0 3e-69 MEIFTTTKELHDFIRHYKQQNPHHTLGLVPTMGALHNGHLSLIKTSQESCDCTLVSIFVN PTQFGANEDFDKYPRKKEADLSICQKAKVDVVFMPEIEEIYPLDKNFQTTFNAPSAMANT LEGKTRPNHFNGVLQVVHKLFNLTQANKAFFGKKDAQQLLIIQKMVEDLFLPIEIIPCPI VRTQEGLALSSRNAYLSEEGKKKALKISHSLNMATKMIMLGETESTKIKQAALEILQDLE VEYFVIINKNLQEIPRIQKDSTLILVVAKVEGVRLLDNLWL >gi|197325098|gb|DS990368.1| GENE 152 150567 - 151589 780 340 aa, chain + ## HITS:1 COG:no KEGG:Pat9b_2519 NR:ns ## KEGG: Pat9b_2519 # Name: not_defined # Def: type VI secretion-associated protein # Organism: Pantoea_At-9b # Pathway: not_defined # 1 336 3 333 336 118 23.0 5e-25 MELDFLTVFVSDENKAGKDEEYSVLYMDMENLINETSQVENIGNKPLDYKKLENICLELW KTTRDLRVAVYLTFAQSQLNGLRGLYEGVSLVEWLIVNLWEEMYPALDPEDDKDPTERLN ILQILSPNMMQSQGISLFLIALRDIKLFKELSYTLRDLLFVQGEIESVSHDINTSVFYNE TRMASKNEIEENISLLNMILSVLEHIDSVIYEKTYQNYSFSFDALKRDLTILLKFYNSLQ SNEVTFNSEEFVDENNQKESKIALGNCLDINTYIPQNRQESLLLVQRSIEYFRKYEPTNP APFLLERALRIAEMNFIDLLKDIEPSYVDRIKDVLGVSKE >gi|197325098|gb|DS990368.1| GENE 153 151617 - 152120 465 167 aa, chain + ## HITS:1 COG:STM0273 KEGG:ns NR:ns ## COG: STM0273 COG3516 # Protein_GI_number: 16763655 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 2 156 5 160 180 200 67.0 8e-52 MSSGQKFIGKNRAPRVQVEYDVELYGAEKKVNLPFVMGVLSDLSGKSEVVTKVDEKKFIG IDVDNFNEVMKNIKPRVAFMVPNQITGEGQIAIDMTFTNMDDFSPAVIAEKVDGLNQLLV ARKQLANLLSYMDGKAGAEELLNKILSDPELLNALGAKKDDDKKYKE >gi|197325098|gb|DS990368.1| GENE 154 152123 - 153607 1444 494 aa, chain + ## HITS:1 COG:PA0084 KEGG:ns NR:ns ## COG: PA0084 COG3517 # Protein_GI_number: 15595282 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 1 494 1 497 498 673 64.0 0 MVESNSEKSLDAKTFELNDFEKLLNQEFQPKSEEANEAVHSAVKTLIAEALQNANLIKGG VINTIEGIIAELDKKLSMQINEIIHHDDFQSMESAWRGLYFLVNNTASSESLKIKVLNIS KNELGKTLKKYKGTAWDQSPLFKKIYEEEYGTAGGEPFGALIGDYYFNQTAPDVDLLRSM AQIAAASHAPFISSVDPSMMNLNSWQELANPRDISKIFSTPEYAVWRSFRESDDSRYVAL TLPRMLSRLPYGVNTNPVEEFAFEEDTGSGDSAKYSWMNAAYGMGVNINRSFAEYGWCAR IRGVESGGIVESLPMHTFPSDEGGIMAKCPTEIAITDRREAELSKNGFLPLCYWKNTDYA VFLGGQTVNKPQEYDNKDATANANLSARLPYIFAVSRFAHYLKCIVRDKLGSFKERQDMQ NWLSNWISNYVTSDPNAPEEVKAKYPLAEAKVEVDTIEGQPGYYSAKFYMRPHYQLEGLT SSLRLVSKLPSGQK >gi|197325098|gb|DS990368.1| GENE 155 153626 - 154120 702 164 aa, chain + ## HITS:1 COG:STM3131 KEGG:ns NR:ns ## COG: STM3131 COG3157 # Protein_GI_number: 16766431 # Func_class: S Function unknown # Function: Hemolysin-coregulated protein (uncharacterized) # Organism: Salmonella typhimurium LT2 # 6 163 5 157 161 68 28.0 6e-12 MVTDFFIKIDGIDGESTEQNHQKWIEVIDFGHGATQNVALGKTYEISGRGHLTPFYFTHM VDKATPKLQHYCMTGQKINKVEFQVCRSIGNSQVSVYEVTLESVKIAKAEINTVSRVIDA ETAYQAVERVEFIAGKITWKVTPIKSDNTKDGAVEASFDQTINS >gi|197325098|gb|DS990368.1| GENE 156 154148 - 154624 426 158 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313141336|ref|ZP_07803529.1| ## NR: gi|313141336|ref|ZP_07803529.1| predicted protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 158 2 159 159 267 100.0 2e-70 MIGNDVKKNTTNGSGFLPYTLSKIINDSSLLLSKTINVELLEQDIINNLKMIFSSKSHLD VKDELISTSVLCMGLKDFSGEQVTDDIIKAFKDRLLEQISFFEPRIKVDDISIKNLNDNK HIYQIEIDALYNLPLLDGGLNLKVNFDFETGSSVFENI >gi|197325098|gb|DS990368.1| GENE 157 154634 - 156448 1056 604 aa, chain + ## HITS:1 COG:PA0088 KEGG:ns NR:ns ## COG: PA0088 COG3519 # Protein_GI_number: 15595286 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 1 599 1 609 619 209 25.0 1e-53 MSKQFLDFYLKNLNYIKSSAAEFAKEFPKIASKLDISQFESEDPFIERLLEGTAFLAARV DEKISSGFPRMLESLLYSLSSKSLFPIPSYAIVELIPNYSNMTHDVSYIDKEEIFKFDSS LQGESCRYTPVWESPIYPFNIVDSIYTDRDIENLGISEELSAILILKLEMIAPLYFSDLK LLNIDFFLNMNEVDASTLISHLFSNIVEIYVKNSDTGEIIKKESCKFSLTALESGIRNFN SYTNEISGLLGFEEYFSYIDLFKFCRLTDKDQLFLDMQSKNVELIFGFNKKNNDLKNIIS KDAIKLNYIPLINIFKMRSSRMIVEQQVEYHIVPDVTNALNYEVYDIERVDFYNASNEKI FSAKPFYHVDNDLLPGQKYDYFSLYRKDKQIGLNSYRSNYLGQEVFISIAGENWHNNYEN IQQLSAELLCTNRDLPIFLKEGIKANVQNNQIQAASLVYTPSKPKKSLISNKEENWEKLL YVMLNLSSILWRNGDIPLHIIRNIIQCYSALSLDETERIANAIVAIKTKLKNFRFVCNHS VFYEQGWQIDVEFSEQKVQDVGYFLFACVLWNFFKQFSPLNSHIEMNLYTQEQGFIVRWT TLEN >gi|197325098|gb|DS990368.1| GENE 158 156427 - 157032 299 201 aa, chain + ## HITS:1 COG:PA0089 KEGG:ns NR:ns ## COG: PA0089 COG3520 # Protein_GI_number: 15595287 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 23 199 26 204 348 101 30.0 8e-22 MDNIGKLSRNFAKKSANREKVPDFFTIVRYIENNNLSKSKVGKAPNIQSEIVRFSQLPHL KFPENEIANISVINGVPLVTVYFFGLLGPNAPMPLEFTDFVLKRTLSYYDLSLQRFLDII HNRMLALYYRAWALSNQAVSEDRENQIYTKIISAFSGNSEFIYKNPKNSIPRDTQMAYVH FLSKRTRGRDGLEKIPLSYSF >gi|197325098|gb|DS990368.1| GENE 159 156995 - 157465 524 156 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|253827137|ref|ZP_04870022.1| ## NR: gi|253827137|ref|ZP_04870022.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] # 8 156 200 348 348 298 100.0 9e-80 MVWKKFPFHIPFKVIPYVNTRHMIPKEFLYQLGSDKKSILGVNIQIGSHYFSNTKKIILE VGEISLDECKKMLPGSVGFKRLRQLVNLYVNKPLRYGIRFIIKKNSDFRGYLTGKNALGI NMWLVSKNCKTPESVIVVNAFNWSKKIHNDSYEEFK >gi|197325098|gb|DS990368.1| GENE 160 157462 - 160092 1194 876 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 189 866 175 806 815 464 39 1e-129 MSKIKRIHLFSKLSKISYQALESATILCKNRGNSYVELAHWINQLMLEENTDCSYIVDFF ELDKNKITKDLISYLDKLPKGSSSIEDFSNDIELAIKEAWMISSIVFDFDKIRSGSLLLA LKQNSNLISKLHDMSHEFIKINADVLQDKFKEITKGSVEVNESYSNVSNATKSDPNLNNN DVLSLYTIDLTQKAKEGKIDEIVGRDKEIRQAIDILIRRRQNNPILTGEAGVGKTAIAEG LAVRLAKNEVPSILKGYVLRSLDIGLLQAGASMKGEFEERLKKVIEAVQNSSTPIILFID EAHTLIGAGGTAGQNDAANLLKPALARGELRCLAATTWQEYIKYFEKDPALSRRFQNISV EEPDDEKCIQMMRSIAKSLEKFHHVTITNEAIIASVKLSRRYLPSRKLPDKSTSILDTAS ARVALSQSSMPESLEILIKKIESKQLEKEILLREEREGIDHSESLKLIDMELVKLEQEKQ SLEAKFDKEKEAIQEYKELRTKLLNEQDENELEKFKEKLNDSRGKIAQIQGENPMILPVV DAQAIAAIISEWTGIPLGRMIKDEAKSILALEEELAKNIIGQNHSLSLIAKSIITAKANL ADPQKPQAIFMLAGPSGVGKTETALSIAQMVYGSRDNIITINMSEFQEAHTVSTLKGAPP GYVGYGEGGVLTEAVRKKPYSVILLDEIEKAHHDIHEIFFQVFDKGRMEDGAGRLVDFRN TIIILTTNVGDSEIFDLCEDGNYPKPEILERAIRPVMQKVFPAALLGRLVVVPYYPLNKE ALHKIIDLKLQKIIQRIQEYYKAEFAYDVSLKDEIMTRCNNIASGARMIDAIINNEILPN ISIKFLQNNLETKKISKVFLEVKNGEISYQFEYKKD >gi|197325098|gb|DS990368.1| GENE 161 160095 - 160385 427 96 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417798|ref|ZP_03655804.1| ## NR: gi|224417798|ref|ZP_03655804.1| hypothetical protein HcanM9_00839 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0487 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0487 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 96 1 96 96 132 100.0 6e-30 MPNPIATLTSTSATSDLVVSPGFVKYLCKGMPVSLVGDSISGANCVGVISNTTAIKYTYG GKPRAVVTSMITGSNPVTGVPISVPVAFSNVVNILS >gi|197325098|gb|DS990368.1| GENE 162 160394 - 163276 2738 960 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417799|ref|ZP_03655805.1| ## NR: gi|224417799|ref|ZP_03655805.1| hypothetical protein HcanM9_00844 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0488 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0488 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 960 1 960 960 1734 100.0 0 MIKNYINNIEVSSPDSSIPSGLLKNLVVYKIYSQESISNEFEHRIFILIKGEIEKQSKTK VLDLGEKKLKITIDYGKNKSKRIITGIVADIINSGYIEYGGNVNYNYELVLVPPTIIYED MEFKNKTYKEEKFEGLLDKIFNKSVISVNFKKNAEIFEEKFGDQINYNQINETNLHFFKK TMKLFGLNYYYEYSKGSYTCNVQENLAFGKEFKESSSIQLLENIILNKNLLQKKIRGYEL DTSNDRWQEFVDKNINNLNAPKKVIKANCSDLSVDLSTIIKFPQKQFGQELKARIYKYNL VINKQIHSENIKGIENFDNVSMAFESIVEEQNVEYGYVGEMSILPIQTTNYSSSSSVATQ DLALAKNSALNAEFRLDNIQRDSNKQKIPSTQTSIKDQLVIKKACVVENTDKNEKFNTFQ AKVFEHVKGNFQLSEDTLTVNLTMPIGIDASFYRMPIENDIVLIVNIDGVWYLHSCLMEK IENNFKITTPKNMFIESTNEESNLKDMGDQCLWAYDYQITEGEQKNTYKRKGSSLSLGKV KDLQKYSLDYWKKRNLQDRKLKQYQTINSLFKELEKTDNFESSSKDENSKDENSKDENSK DEYIVNIDTEGLVNIDADENIFAQSGKDMYLTGENIYMSSIEGNVELRAEKSIVLKVGRS SLIITEEGISLNVIDTVSPSRNAVVSLSNMEGVMISGTEFSARGHFGAKLAALGGSVGVE GCIASIAAHKVYLSAPSAVSLAADGAVNMLNMLFDNIEGCSEEGNSFSDADQLEQIRMIA LKIDHMKHLLHQQASRSKAAGVFEALVLLNHMMYLVEKLAFFMVKAEIIKKENEEHKENE EHKESEDLEKLEAKLKRLELAIYSSMHINYITETVTLMLESFGEAPLGTWVPSSLSLYPH KIETASYRCDLQVSSENEVNCVQLPGPSFFQKARLASNFFSAADHIFYFSQRVEKNKTTK >gi|197325098|gb|DS990368.1| GENE 163 163304 - 163690 295 128 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417800|ref|ZP_03655806.1| ## NR: gi|224417800|ref|ZP_03655806.1| hypothetical protein HcanM9_00849 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0489 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0489 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 128 1 128 128 206 100.0 6e-52 MLAPKKNNILSNQKEAAEKAYKYAITMTVFNSLAFGGATVGGFICYFRKSDHSGEQITGL NNTQTYINQETRIQSLDNTVLSLATAIAALNVRIQELDQEVATSNSKILSQQEEIQNLII RSALTQQT >gi|197325098|gb|DS990368.1| GENE 164 163699 - 164847 824 382 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417801|ref|ZP_03655807.1| ## NR: gi|224417801|ref|ZP_03655807.1| hypothetical protein HcanM9_00854 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0490 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0490 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 382 1 382 382 605 100.0 1e-171 MSDKLEWMEKHIILFKQESLRKLIEQEGYEVSEELEHLIQNDNALDFFNALIENKLYKNA CDFLAYNLHKRAAIWWAYCCELELLEEIKIKQEKEVEKNKKQEKKQEKEMPEWLQDALKK AGESQEEAQKKFQELLEQMDKIKIKQAELEKTIDPKLFARFKQKTENIYKEIEKETGIYL PKFREEILQKAQNYTPVDHYENSDLKKEMDNLNQKLNTMKEEIKENTELYFPKKDINKQK EKTTNALNAIYAWIISPDEENSKRAFKASVGLEDKAEGLLALSAFWAFGDLNLGGDIIVK APNAMVSNGIKSVLIKLAFMEGETKPKQRYEKFFEIGMEIAYGKNNWEESLSKNHAPHEY KFNLNSGKFETKNKRFNGEVDG >gi|197325098|gb|DS990368.1| GENE 165 164840 - 165337 398 165 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313141344|ref|ZP_07803537.1| ## NR: gi|313141344|ref|ZP_07803537.1| predicted protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 165 5 169 169 286 100.0 4e-76 MDKILFKSFFVFLFLFFFSACTSSYNMSVYLSPELKDYYGYYPSLEVDIVGLNENEKNWM SSYNMNKYFEANNPMRKSLMPHTLKFSQSNGAAEQDFNDNAKEWNLWKKKGAVELLVAVN LPGVDDSVKKVTKDIKSYIGKRKHIYIEIRPVGITFLDSKPTYNQ >gi|197325098|gb|DS990368.1| GENE 166 165359 - 166717 1164 452 aa, chain + ## HITS:1 COG:ECs0225 KEGG:ns NR:ns ## COG: ECs0225 COG3522 # Protein_GI_number: 15829479 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 4 422 5 417 443 110 24.0 8e-24 MIFKESVHWSDGLFLQPHHMQQMQNLIFDINRTLWKLNVYYPYGLIECEINEELLDDLRI GLRKICAIMPDGTEISMPGNASIPMLNLDIDKCLDNENFLIYLALPVYNENEANLNSSTE TNRLYKTKEYAIKDENTGNNEISLLKRIFNIKLSTDKNDDNYVYLPICRLNWISKNINAP KLTFDRDYCPPFFIMSHDCVIKEYVLELMYLIRKKRDQISEQIAQSGYNTNDISGENLFH ILQLSVLNSFEPVISAVVNTNKAQPFEIYLKLASFLGELSALFPLLKKHEIMEYDHNNLM SVFKDLIRKIRSVLAIGGYLDYIQYDFTLHNGYYECKLKSNDIHNSNEFYLAINTSGSID KIKTSVEQGDNFRLLAKSNLEKRTRGVKLKELRYPPRYLPAIHNALWFEVVLGDNDKAWM DICEENVAVIDLFHDVFTDFRASLFLVENKGE >gi|197325098|gb|DS990368.1| GENE 167 166718 - 167446 686 242 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417804|ref|ZP_03655810.1| ## NR: gi|224417804|ref|ZP_03655810.1| hypothetical protein HcanM9_00869 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0493 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0493 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 242 1 242 242 445 100.0 1e-123 MYKNIIEDLCRPLILYMCEIWSFKVRKIEPNEDKIINDINLMLNKIKEQCYSNPMLAQEF SYIEKTLIFFIDYTIKEGNFSFSKNWKNLSRKYGEFSGDDKFFDILALNLDDPMGSERVD LLYQFMGLGFSGSYKNNIEVIENKMKQCLAKMPSSFDINNVRITPISQSQDQDIEFKQNK KTKIFIIFYLAMFCIMICSLGFNYYIFDKKVDAISISINSAINEAAKSYKNLVTDMNTAI KE >gi|197325098|gb|DS990368.1| GENE 168 167451 - 171677 2382 1408 aa, chain + ## HITS:1 COG:mlr2349 KEGG:ns NR:ns ## COG: mlr2349 COG3523 # Protein_GI_number: 13472148 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mesorhizobium loti # 99 411 126 429 1180 101 24.0 1e-20 MLSVENIFLIIAIIVVCFIVFIFLLPRLMKLRMLFAKAKETKNIRNDLMVWKRIAFLARG GKDSDKIKKQMSVDEIGLIVKAFETCKQNLKANFRKSSDLPWFIMLGEPSSGKSSLIDRS NQDMFATENDYVSKNGSRQAAPIRFWINNNAVVADVSGRIFFDSWFEGSNAQWRAIINNL RNKHKNFPLSGIVITVPVDSLIADDEALIKKKAYLIRNEVNRLLNGLGMSLPCYFVVTKI DVISGFREYFSNVDEEIKDAELGWKNSNHIYNEAEFDEFWKEFISKLRLGRNNLMLSSNN FKQEEDRFDKTSKIYMFPENINETSNNLELYLKIIFDQKKMYSFNSNLMLEGVYFTSAKD EGYSLSKHFAKLHNKSIDDAPMAESLMERQGFFISNLFKYQIFHCFKLAHFTQREIFKRS IPHFMVLGFMVIVSVMWLMAVVFNRDAINENIKTSQQYYSEIGALFGSKNIDNAYLIGMD ENKNTEYYGKESMPNDPLLSREGFYVTALRDAQADWDAPFGFKTSSFLRFGTLNMLHDER LVLFDNIRDRMMTIPLIKSLENHLVIYKDESFTKEKRAALVSLLNFAKVAEENFYYANEN YQHLENILRFLLPDLRPEIISILASKETHSSTQNNNLIDTVVLSPLYTNSIKIGVDSMFN AWVSGNIYPDSFFNKLRDMAYSGAKIDSIINELNAFSPLDFNQSNFQEMITYWNNLYYRE KENYNTLESSFAVVKDNLAKIDKFKQDNKINMNKSNYILLSNIAYEDFLKIHKDDFNLLE FYDNLKPENGKQDIVGDLINDVYLEQNKKDSLLKIEDNYSALREFNFGKLISIFKNVELD KNKDILPLYALLNELFDLAYNPSKINEKNNNSILAFQNYQQDAIKRLEKLKEYEQKYKND QLISKIISVLTLMYQQTFKDAQVNFAQTIFSSYPKTQLEIMNRVAQDNVDQKVFESSSYL NLVYKAEYSPLAVENYIKPFWNVSNQIFQKNNNKEIDSLRKILNLNNNFHNTYKAMEDYT LAFIKYWEDYADLLSPSFKDYTEFKNFIKDLKPYAVNNDLHNVYYTVYKIIDSLPNDTLS KYVLDKKNQALKAIENKINIINPSFSESCGVVLNTWISLPSNAIEASKIFNSFDANKIKD SFFGVNGLIPWWSKLFKQGQFLMKKESWESAMEDFKQHKDEFLKFPLCADADISNAINHE NIMQLQQILLNFVNNNLEQKALEANSTFLSQGDKEIMQWAKSNLNIIDAIYEPIPLEWNL FILDNQTQINLAKNSPYDSAAARFRYVEFQAENSMAENTRFSTISPKDEPIKIGKGSAYL GNFRFLFYIYSNSVEPDSTVEILDKWAILNLYLKKGIIPDQKNDKIFYIPLKITDRLGSD YIYYIGVEFNKEIVEKNKWLNQYDLPNF >gi|197325098|gb|DS990368.1| GENE 169 171690 - 172736 767 348 aa, chain + ## HITS:1 COG:VC1425 KEGG:ns NR:ns ## COG: VC1425 COG0687 # Protein_GI_number: 15641436 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Vibrio cholerae # 18 344 47 363 366 218 34.0 1e-56 MLFRIFLFLFLPLFGLNAKGENLNIYSWSEYFSQEILEEFEKETGIKVHLDTYTNNQEMY ANVRLIYEHNYDLIMPSTYFILPLREKGLIQKIDKTKIPNFKNISQNFLGQFYDVYNQYS IPFLFRIMGLAYNEKTLNGIHIHSWRDLWRDEFKGKVAIIKDYQKMLQVSLVSLGYSRNT KEEEKITKAFEELLILAKNANFIDFSKINNEDLISFFDGNNAIATMWINDVKAIQKYNKN IHFIIPKEGGMIWMDSFALTANAKNIENAYKFINFTLRPDISVKIANNIKFNTTLKYDLI KQNLNLDNYQNIVFMSDDELNHFEFEVDIGQNLLIYIKYWDELKRIFN >gi|197325098|gb|DS990368.1| GENE 170 172904 - 176158 2989 1084 aa, chain + ## HITS:1 COG:no KEGG:Spro_3913 NR:ns ## KEGG: Spro_3913 # Name: not_defined # Def: outer membrane autotransporter # Organism: S.proteamaculans # Pathway: not_defined # 9 1068 9 1073 1091 369 29.0 1e-100 MRFYKMLPVLALSAGLASAYDTTIVYNGNKPIFQLDFYNKGESVAFFGETSTSPFTLSEA QRNEIIRATQFWANIIGTNAVNFSPIPISVSTMDEENAYASSYDLFPDPIFNRVLQGENI DAIRQELLDGGFSKEDVEYIGHISMGTLDWYIAPHPTTLPKNGDQFETFSTFTHELFHAL GVASLTYSDEETSGTFFDSLNSFSSHLYDINGVKAQEGMRIVKTQEEVEEAEKKGEIVFL VKDVSDKKGSLSNASGHAYFKGENVAEVIKNAKLGFDGVNGIPINGWEADNLDMSHIELD NSLMSHQNWRNYLFYMEAELALLQDLGYEFDRKLYYGDSIYESNLNWQSDHGYYARQDSK WLVGEYNPTEYGVGLHIYGKNNIATQNHDILSSGIAASGIRIDGASNTLTIANGTKVHTL GDYSNALLVAYGKNHIINHNGELKATGKGGIAINIDFGDNMLGNTTEYRGSYMHKILGKD QNDISSYNLDGALVKTLNLNSNSSTTGSLASIYIADNAYVENINIAQGAKIEGDIISNWN PNNDKLSNAHKGIYYTNLNFGSTSLSRAAFNASDNAWNVKANILGYDSFKMNVNENVNLQ GSAFVYDLTNKAHFALLSKDNVNPSVLYIKNNFTQNQNATLTAGVNANGQSLVNVGGTAT LGGAFRFYMSKDFYQDKVVLNSNLINANQISGEFNSIVYDESLNFSPTLKFTYDQNTKEL TVTRNYTPYAKNSGDVSLAYALNSLAQNGKDEDVALLFEELDFARDTQTIIQGLNNLNAK VYLDSAKISLDFQEELNKEILSDIRKEYANEWQSLIAPFGSYQSSRANGDFNAYKGYGSG VKVKAVKEFDRSIVGFNLVLNNNDIDIDDTLANTKTTGVYAGVFSKYDLEHFYLLGSFRM GYERTELNRNVNIGAFNSSYDSKFNSYLTSEMVGIGKSFNYQGISYGPLAYIEHSFLHHA TIDEENQSSTALNVNSKNFNALNSFIGFDVNYEKNISNKAVMNFSFLGGWNHYFLDSLKN NANFKGASSNRFYAKSKLDNQDSLYLQGGTDFTYNQFFFTRLMLSSDIKDNIDFNAQLEV GVKF >gi|197325098|gb|DS990368.1| GENE 171 176815 - 177015 62 66 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVRPRGFEPLTYGLEGRCSIQLSYERIWYQRGDSNPRPPAYETSALNQLSYLGTPNLKKS CNYILY >gi|197325098|gb|DS990368.1| GENE 172 177165 - 177773 675 202 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224417808|ref|ZP_03655814.1| ## NR: gi|224417808|ref|ZP_03655814.1| hypothetical protein HcanM9_00889 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0497 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0497 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 202 1 202 202 291 100.0 2e-77 MTINQGLGNLGNLGGIINEANRLLGNSNPTNAIQKTQSIENDIQNDNEDLLQKERITYGM ISLELMSDEQYLAFERVTAGMSPNEKISVAQTLTRAGNLSASVERVEQREKNLQNSQESN PKATNQNQWFLGITQEGWGEIAQEFQNNLNHLDGIYTKSYNKNLSSNYNDIMQKNQDAKT QRILREFSHAIHLGNLQIDTMS >gi|197325098|gb|DS990368.1| GENE 173 177972 - 179084 465 370 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 3 361 9 362 537 183 33 1e-44 MEKILDIIEGISYEKGLPIESVMEVVKESVIKVAQQTLDSKILYDAEIDKKNKTLHLYQV ISVCSDDYEAKEDKEHFIPLSEARKHDSEIKVGDELRYELSLENMNRSAVNTLFRELEFR IQRLIETQLFDKYKAQIGKIVSGSVVRIDDLGNTFVEIDEIRAILPKKNRIKGEEFKVGQ VIGAVLKYVGIDKQNGISIELSRTTPKMLEELLRLEVPEIKDGEVEIVACARIPGERAKV ALKTDSMKVDPVGATVGVKGVRINAVSKELKNESIDCIEFSNQPEIYIARALSPALIVSV VVEDKKAVVSISSEQKPKAIGKNGINVRLASMLTGYEIELKEIDNGTLGDRQTKEPEKSN LDILSSLFKE >gi|197325098|gb|DS990368.1| GENE 174 179160 - 180629 1665 489 aa, chain + ## HITS:1 COG:jhp0911 KEGG:ns NR:ns ## COG: jhp0911 COG0760 # Protein_GI_number: 15611978 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Helicobacter pylori J99 # 1 489 1 486 487 265 34.0 2e-70 MISFMQKHKKYLMITIWVSTIAFVGAGFVGWGSYDFSSTSNAVAVVGKTKVSINEMQREY SRLYGIYNQLVGGTLDEEQAKKMGIEEQALNNLIIKALMLNYAYDLGLRASKEEIIQAIT STESFQNNGQFDEQIYKRILQENQLKPKDFEESIKENLILQKLDALLDMPLTPLEIETLS AAYSMEDLVHIQIIDKKTINVNPTNEEVKRYWEENKDIYQTERGYEISSVFIPLDSIEIQ EASLESYYEDFKNQFLDSEGQVIPYEKAKEQVSEKYRDAQAQKEALKEYIALRKNENPKA ENLIIYEGNEDYGVEFINLLSQAKEQETLKPIKIAKDKKSGYITAKVIKIIPSEPKTYEA AQGNAKEDFVNSEKVRLLKEKATQALENFKGVDVGYVGYGETKTLKGLTKEESQEFAQEL MSKGEEKGYILLENKAILYKIFDQRVKNSAIISQNLDFLMQNGTQIKARIVEKEFLDYLS KTYKIVRKI >gi|197325098|gb|DS990368.1| GENE 175 180638 - 181297 876 219 aa, chain + ## HITS:1 COG:Cj0695 KEGG:ns NR:ns ## COG: Cj0695 COG0849 # Protein_GI_number: 15792044 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Campylobacter jejuni # 14 218 5 209 462 224 56.0 1e-58 MEINYKGSELEQIILGIDIGSTKICAVIANCKEGIPHIIGTGFHKSQGLKKGTITNIEQA SRAIKEAVNDAKRVAGTTNNKAIVSISGAYTKSTDNSGVVNIPNNEIGIKEINRAIQTAL YNATIPSEYEVIHILPYNFKLDDQDFIDDPMGMTGSRLEVSVRIITAQKSSLGNLKKAIK AAGIEIQNIVLASYASSIAVLSEDEKNLGVACIDMGGST >gi|197325098|gb|DS990368.1| GENE 176 181548 - 182315 933 255 aa, chain + ## HITS:1 COG:Cj0695 KEGG:ns NR:ns ## COG: Cj0695 COG0849 # Protein_GI_number: 15792044 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Campylobacter jejuni # 1 255 214 462 462 158 38.0 8e-39 MIHVGNSLRYNDFLGVGSNHITNDLAMALHTPQTIAERVKIEYGGLLKAEEESGNLIEIP SIGGDDNSKHQVSLSTVYNVVYARVEETLMILEKSLEKSNLKDQLGSGVVLTGGMVQLEG LRELASALFGMPTRIAKPVEIDGLFTDLRGPECSTAIGLILYASGKYTNYEIDSEKRIRY RNEKLEEGMGQFHEGINLMNPLRDKAPTHNSPVNSIPKSAADIKQDLSGITEIRKITAKN NNIFVQIWQKLTQMF >gi|197325098|gb|DS990368.1| GENE 177 182338 - 183498 1742 386 aa, chain + ## HITS:1 COG:Cj0696 KEGG:ns NR:ns ## COG: Cj0696 COG0206 # Protein_GI_number: 15792045 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Campylobacter jejuni # 4 386 6 370 370 318 53.0 1e-86 MVDVQEVKHDFSANIKVIGVGGGGSNMIGHLIATGTYDGIDLAVANTDAQAISTSLAPVR IQLGAKLTKGLGAGMKPQVGEDAALESYEELKSFLEGTDIVFISAGLGGGTGTGAAPVIA KAAREVGALTVSIVTKPFRWEGRKRSELAEEGYRKLRAESDSIVVIPNDKLLSIIDKNLG LKDSFRIVDDVLVRAVNGVSGVILSHSAGDINVDFADVRTVMNHKGLALMGIGEASGADA AKEAVKIAIESPLFDNMSISGAKGVLVLFYLNPDYPMAEISNAMEVVYDNTDPEAEVIFG TTTDAALERDKVRITIVATGFEKEASQTQTTASDDGATLKLVNPKDLSQKINQQTSLMNA KKKVSGDDFTNEEYLDVPAFLRRQMD >gi|197325098|gb|DS990368.1| GENE 178 183518 - 185308 1918 596 aa, chain - ## HITS:1 COG:Cj1366c KEGG:ns NR:ns ## COG: Cj1366c COG0449 # Protein_GI_number: 15792689 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Campylobacter jejuni # 1 596 1 598 598 755 62.0 0 MCGIVGYIGNNEKKSLLLNGLKELEYRGYDSAGISVLSQGILHTFKAVGKIINLERKCEN FTSIGFGVGIGHTRWATHGKPTEANAHPHFGKFSNVVHNGIIENYQSIKEKLQKEGHHFI SQTDTEVIVHLFESYLEKNENPLEAFKQTIADLKGAYAILLITKKAPDKIFYAKNGSPLI IGKGEKDEIFFASSDAPLIGLAKEVSYLEDNTLGVMDIHSFSTLHNIKKLTGDKLSAQKD GFTFFMEKEIYEQHKVLLETMMGRVSEEGFNLEELNQFDFNNISSITLCACGTSYHAAIV GSYLLERIAKIKTKVEIASEFRYKNPILCKNELFIVISQSGETADTLEALKLAKNNHLKT LSICNVDNSSMVRESDACLLTRAGIEKGVASTKAFATQVMVLWILSCYLAQSKKLLSQAE CKQQAQIMLNATRLTEVNKKMHERIKRLARRYLHGHGFFFIGRDIFYPLALEGALKLKEI SYLHAEGYPSGEMKHGPIALADTGLFCVALMPKNLLYDKIKSNIEELSARDAMICALSTE YYEGCDDWIRISESQHYMEEFFEMMVALQIFALEIAVRLGNDVDMPRNLAKSVTVE >gi|197325098|gb|DS990368.1| GENE 179 185400 - 186344 1064 314 aa, chain - ## HITS:1 COG:jhp1038 KEGG:ns NR:ns ## COG: jhp1038 COG1013 # Protein_GI_number: 15612103 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit # Organism: Helicobacter pylori J99 # 1 314 2 314 314 526 74.0 1e-149 MSEIKNLKQFSKAAERFEGANLLCPGCAHGIIVREVLNATNYPLLVATSTGCLEVSTAVY PYTSWDVPWIHIGFENSSTAIAGAEAMYKALKRKNRLYSDKEPKFVAFGGDGSTYDIGFQ FISGCFERGHDFTYVCLDNEVYANTGGQRSGSTPLGASTTTTPAGRVSYGKKDKKKDLLS IMAAHGSPYVAQVAPNKWKDMSKKIKTAIETEGPTFINAMSACTTEWRFPSNQTIEMSDL ATDSLVFPLYEIINGRKLRITYRPKNIIPVRDYLGAQARFKHLFKPENEHIIEQWQKEVN AHWEYLQRREEAKI >gi|197325098|gb|DS990368.1| GENE 180 186355 - 187572 1633 405 aa, chain - ## HITS:1 COG:jhp1037 KEGG:ns NR:ns ## COG: jhp1037 COG0674 # Protein_GI_number: 15612102 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Helicobacter pylori J99 # 1 404 1 406 407 571 67.0 1e-163 MAAVYELQAIEVWDGNMAASHAMRQAQIDVVSAYPITPSTPIVQNYANFLANGYIDGEFV MVESEHAAMSGCVGAAAAGGRVATATSSQGFALMVEVLYQASGMRLPIVLNVVNRALASP LNVNGDHSDMYLGRDAGWINLCTYNPQEAYDFNLMAFKIAEDYEVRLPVMVHQDGFICSH TAQSVRPLKDEEAYRFIGDYKPKNAMLDFSKPATYGAQTEEDWHFEHKAQLHNAIMNSMP IIERTFKEFEALTGRKYNVVEQYQTDDAEVIIVALGTTVESARIAAQRAREKGIKAGVVS IRVLRPFPYEELGKALKNCKAVAFLDRSLPAGAMGMLFNEGVAALYAMDNKPIVSNYIYG LGGRDLTQNHLEEIFKELDSDAKAGKLTHKTQQFIGLRGPKLGYN >gi|197325098|gb|DS990368.1| GENE 181 187575 - 187973 575 132 aa, chain - ## HITS:1 COG:HP1109 KEGG:ns NR:ns ## COG: HP1109 COG1144 # Protein_GI_number: 15645723 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit # Organism: Helicobacter pylori 26695 # 4 131 2 129 130 150 62.0 6e-37 MEYKGWNEFEIGSVLFPFEKKGDEVVQEHADKRNYRPDSSYKASVAHWRVEKPVYNNEHC INCYFCWVYCPDSSILVRDEKMTGVDYVHCKGCGVCVDVCPTNPKSLLMFNDYETNESAL AKWPKKEEKKKD >gi|197325098|gb|DS990368.1| GENE 182 187984 - 188544 773 186 aa, chain - ## HITS:1 COG:jhp1035 KEGG:ns NR:ns ## COG: jhp1035 COG1014 # Protein_GI_number: 15612100 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit # Organism: Helicobacter pylori J99 # 1 186 1 186 186 262 66.0 3e-70 MLEIRWHSRAGQGAVTGAKGLADVVAGTGKEVQAFAFYGSAKRGAAMTAYNRIDDQPILN HEKFMNPDYILVIDPGLVYITDICANEKAETKYIITTHLSKEEFLKTKPELNGKEVYTLD CIGLSLEAFGKSIPNAPMLGAFLKISKTLELEFFLESFKKVLGKKLPQKIIDANMEVIKK AYNEVK >gi|197325098|gb|DS990368.1| GENE 183 188704 - 189351 674 215 aa, chain - ## HITS:1 COG:Cj1477c KEGG:ns NR:ns ## COG: Cj1477c COG0546 # Protein_GI_number: 15792792 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Campylobacter jejuni # 3 212 2 209 213 143 44.0 2e-34 MKNKIVLFDLDGTLIDSTQAICESFYKAFKTFKKDIPNEESIKKLIGYTLEDIFIALGIE EKECPQYVMAYKEHYRQICNEKTILLKNAKESILKAYEFAYLGIVTTKTGLYSKDLLQHF NVLQYFHCVIGRENVTKPKPDKEPILKALEILPKDIPNSHIFMIGDTPLDILAAKEAHIQ SFGVLSGYATLEMLQRYTDKIARDSLEAISIIQSI >gi|197325098|gb|DS990368.1| GENE 184 189470 - 190213 514 247 aa, chain + ## HITS:1 COG:Cj0452 KEGG:ns NR:ns ## COG: Cj0452 COG0847 # Protein_GI_number: 15791816 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Campylobacter jejuni # 39 247 39 246 253 157 47.0 2e-38 MPHRYDKIIAKLIKRPLSQNEFLLLLDEVGGLFSERESELEIIKTSGIPLIFAHDKVYLK TTLTPIFEERFCIVDIETNGHNPFVHQPIEIGAIVYQGGKICESFHSFVFCEEIPEYITK LTGITSPMLEKAPKIHQVLESFKLFLSDCVFVAHNVNFDYQFLSNALYHYGFGYLYNPRL CTIKLAQKTFTSPRYSLEFLNEFLGIRHSPLHRALEDSKVASEVFKKSLMGLDKKIYTSH DLIKFAE >gi|197325098|gb|DS990368.1| GENE 185 190229 - 191440 1438 403 aa, chain + ## HITS:1 COG:jhp0018 KEGG:ns NR:ns ## COG: jhp0018 COG0019 # Protein_GI_number: 15611089 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Helicobacter pylori J99 # 8 402 2 405 405 489 57.0 1e-138 MLTQNYPKNFEAIPSPCYVLEEEKFIKNLEILDSIQKESGAKILLALKGYALWRSFDIAK KYLSGITASGLYEARLGYETFGGEITTFSPAYKYEEMQELVKISDHIIFNSFLQWQTFKP LIDEANQWRKNKIQVGLRVNPQYSEVTPAIYNPCVEGSRLGITPKEFKKGVKKYGLKGIS GLHFHTHCEQNSDALKRTLKYFIQHFGKYIPQMQWINFGGGHHITRKDYNRELLVKIIKK FKKRFDVQVYLEPGEAVGWQCGFLMGSVIDIVHNGVDIAILDVSATAHMPDCLEMPYRPM VRNSYLAKATSKNGHLKLKGEQKYTYRFGGPTCLAGDIIGDYSFKEPLKLGDRIIFEDMV HYTIVKNNTFNGVPLPSIGMIDKEGRFKLFKSYSYESYKERNS >gi|197325098|gb|DS990368.1| GENE 186 191612 - 192724 1071 370 aa, chain + ## HITS:1 COG:Cj0367c KEGG:ns NR:ns ## COG: Cj0367c COG0845 # Protein_GI_number: 15791734 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Campylobacter jejuni # 1 368 1 367 367 210 36.0 3e-54 MKGYHKILLGTFCSLVIFSGCFGEKDSKAQQQTMVIPVSTYTVEIKDTPVSFEYPTQLTS PQKVEVYARVEGTLLEQNFVEGNVVKEGQKLFKIDPSKYQANVNIAKAQLLSAQATFKEA SRDWERSKKLFEQKALSPKERDQSLSTYENAQAGVANAKANLDNAMIDLGYTDVVATATG KTSLTNYDLGNLVGSASSSNALVTVTQLDPINAEFSIPSKDYYFFRTLNRDNLKVFYILP SGNTYSKEGKLDFIDSVVDASTATIKARAIVENQDFLLIPGEFSRIRLEGLIAKNTITIP QIALLQDAQGSYVYKVVDGKAVQTRVVLGQSVGNSFLIQSGLQEGDRIITDQLVKLRPGA PVNIINTQAQ >gi|197325098|gb|DS990368.1| GENE 187 192738 - 195863 3561 1041 aa, chain + ## HITS:1 COG:BMEI1629 KEGG:ns NR:ns ## COG: BMEI1629 COG0841 # Protein_GI_number: 17987912 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Brucella melitensis # 3 1028 2 1027 1051 1169 58.0 0 MFSKFFINRPVLAMVMSIIIVIAGGLSIMSLAVEEYPQVTPPQVVVQATYPGASAEVISS SVASVLENSINGVEGMIYMQSSSTSSGSLNINIYFTNETDPDQATINVNNRVQAVMSSLP QEVQRQGVTVDKRSSTILAVYSLFSDSPAHDTTFIANYAAINILEELKRVPGVGDAALFS RQEYSMRIWLSPDKLTKYNLTPAEVIALVQEQNSQFAAGFFGQEPVRKDLDFTYTVTTQG RFTTPEEFGNILVRTNPDGSSLLLKDLARIELGAEDYSVNAFYNGRPSVAFGLFLQPGAN ALSVAEGVAKRLEELSQSFPEGLQYAIPYDTTSFVNVSIKEVIKTFIEAIVLVIIVIYFF LQNFRATIIPVLAIPVSIIGTFAGMYLLGFSINLLTLFGLILAIGIVVDDAIIVIENVER LISEENLSVKDATIKAMEEIASPVVAIVLVLSAVFIPIAFIGGFSGEIYKQFAITIVISV VISGFVALTLTPALCVSILKKTEPKPFWIVKKFNDFFAWLTHQFTDKVAHAIRRGVFYVI LFAGLIAVTYGLFTRVPTGLVPAEDKGMLIVSMKLPPATALSKTTDTASFMESTIRNNPN VEAVMALAGYDMLSSAVRTFGGTAFVKLKDWDLRKDESQKSQVLAQSLTGQLMQNPNAVI FALNPPPIMGLSLTDGFEMYIQNRTGGSIQDLQKYTQMVLQEAQKRPELSGVRTTLSVDI PQYNVKLDRQKAKSLGVNIDDVFSTLQATFGSYYVNDFNLYGRTFKVSMQSESAFRESPD NLGDVFVRSSNGDLIPISSLVTFERVIGADVLERFNLFPAAKLMGDAAQGYSSGDALKAI EEVASQVLPQGYSVAFSGSSYQEKNAGGTGVIAFIFGLVFVFLILAAQYERWLMPLAVLT AVPFAVFGAILATWLRGLNNDIYFQIGLVMLIALSAKNAILIIEFAMEAREKHGKNIYDS AVEAARLRFRPIVMTSLAFTIGVLPLAISSGAGAASRHAIGTGVIGGMLAATFIATFFIP LFYTYFARFGEFLGSLRKKHE >gi|197325098|gb|DS990368.1| GENE 188 195856 - 197256 695 466 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157165073|ref|YP_001466086.1| 30S ribosomal protein S12 [Campylobacter concisus 13826] # 15 461 14 460 460 272 34 3e-71 MNKIILVWIGLGLLIGGCSLSPKYEQPKANLPKDFGVEYSKETISQTWWKDFGDEYLNGI VEEALKNNYDLAVAMERVSQARSSWSYARSDRYPSLSAQGEATRNKKNPRQGEFDNYNNF SLSGILSFELDLWGRARDADRSAYATLLASKANRDTIRLSLIASVVESYFGILTLNNQVQ ISQNTLVSREESYQYRKKEFEAGKISEIDMQQARSEMASVRAQLQSLLMERNAAQTALMI LLGRDPQGIFNIALPVESQMLPKAPKVPVGLPSTLLENRPDIEAAEQNLKAANFSIGVAR AAYFPTISLTGLIGYASPELNELFNNSSSTWNYGGNFVGNVIDFGRTSANVELTKSQYRE MLLNYGQTLRQAFGEVRDSLYNYSMSFERLSSLNEQVEALRRTLVLAELRYREGYTNYLE VLTTQSNLFAAELTQQSANLENLSSVINIYKAFGGGWDKSKYAEEE >gi|197325098|gb|DS990368.1| GENE 189 197282 - 198004 805 240 aa, chain - ## HITS:1 COG:no KEGG:WS1329 NR:ns ## KEGG: WS1329 # Name: not_defined # Def: putative periplasmic protein # Organism: W.succinogenes # Pathway: not_defined # 22 240 28 246 246 87 25.0 4e-16 MYKKALLLILANISLVASEMLIKQDLTIHTQIFPTTYSSTIQIIGSQKLHNEKNLSLEDK NKIIKTYNSINTFLKNSSICKGGSFDITPLYEYQNNTREQKGFESNYSLNCDFKDEMAKD FNKILDFIQKQIIANDFLLLPIPKITKIIKKDDLEKIDEKLNQALLNKANEIAQNYSKNL KKQCTIKEISLGLTSRMENTPLNSTATLAKSDSNSLEDIKMPTGKEIEKTAKGKVVFSCK >gi|197325098|gb|DS990368.1| GENE 190 198076 - 198429 592 117 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|224417826|ref|ZP_03655832.1| 50S ribosomal protein L20 [Helicobacter canadensis MIT 98-5491] # 1 117 1 117 117 232 100 2e-59 MARVKTGVVRRRRHKKVLKLARGFYSARHKHFRKAKEQLERSLCYAFRDRKQKKRDFRKL WIVRINAACRINAISYSRFMFGLKKAGITLDRKILADIAMNEPQSFTKIVESAKKAL >gi|197325098|gb|DS990368.1| GENE 191 198522 - 198716 325 64 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|224417827|ref|ZP_03655833.1| 50S ribosomal protein L35 [Helicobacter canadensis MIT 98-5491] # 1 64 1 64 64 129 100 2e-28 MPKMKTNRGAAKRFKLKKNLIKRGSAFKSHILTKKRPRKIANLNAPKYVHSANSESVKKM LCMA >gi|197325098|gb|DS990368.1| GENE 192 198742 - 199257 339 171 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 10 171 3 165 166 135 41 5e-30 MSKNIDVVLNEEIDFPEIRCVGDDGEQYGLISSDEALKIAESKGLDLVLIAPDAKPPVCK IMDYGKFRYQQEKRQKEAKKKQKQIEIKEIKLSVKIAINDINYKVKHAKEFLKENKHVRF RVFLRGREVSEPQVGFEVLNKVAAMLEDVANIDRDYKIEGRYVNMLVTPKK >gi|197325098|gb|DS990368.1| GENE 193 199254 - 201071 2517 605 aa, chain - ## HITS:1 COG:HP0123 KEGG:ns NR:ns ## COG: HP0123 COG0441 # Protein_GI_number: 15644753 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Helicobacter pylori 26695 # 2 605 3 612 612 836 66.0 0 MSQIIGFKTSDTIYDTQTASELKIEGEPIYFDNSPDSLAIMRHTCAHLMAEAIKSLYPEA QFFVGPVVEEGFYYDFRVNHKIGEEDLAKIESKMKEIAKKGEQITKYHLPRQEAIEKFKN DDLKQAVISRIPQGDGTLSIYSQGDFEDLCRGPHLPTLKLLNAFKLTKIAGAYLGGDEKA EMLVRIYGIAFADKESLNQYLRQMEEAKKRDHRKVGTEMELFTFDEEIGAGLPIWLPKGA RLRRNIERLLTKALIQRGYEPVRGPEILKSAVWKTSGHYSNYGENMYFTTIDGVEYGIKP MNCVGHIKVYQSALRSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCRPS QIATEVENIIDFTKKIMDSFDFSYEMEISTRPEKSIGSDEVWEEATQALKNALEICNIPY KIDEGGGAFYGPKIDIKITDAIGRKWQCGTIQIDMNLPERFKLEYTDENNSSKQPVMIHR AILGSFERFIAILTEHFGGEFPFFIAPTQIIIIPLGEAQESYAKELRNQLLNVNVYAEID NKNETLNKRIRNAEKQRVPMIVVLGAKEEQEKIVAIRDRREKQQSTMGFDEFIKFSKEKM REVSF >gi|197325098|gb|DS990368.1| GENE 194 201176 - 203968 2613 930 aa, chain - ## HITS:1 COG:jhp1003_2 KEGG:ns NR:ns ## COG: jhp1003_2 COG0755 # Protein_GI_number: 15612068 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, permease component # Organism: Helicobacter pylori J99 # 645 928 3 284 285 385 67.0 1e-106 MNQIKTLLNNIIHGFCNFWVTFILLLGYGSSCAVATFIENDYGTPSARALVYDTQWFDLL HLLLVLNLIGLIILSRAWQRKKYASFLFHSSLVVIFIGAAITRYYGFEGVMHIREGEKSN TIQSQEEFLIILAKMDDKFYRAFFPTTITPLVQQKFDHKLPFGNDNLEVKFLEYIPAKDK TTLDILKVEMSYQGCKEIIEVTKNIMGQTPIPFSLSSAKFALEWGTRPITLPFSIELKDF QLDRYAGSMSPSSYASEVAIIDEANKTEIPYRIFMNNVLDYGGFRFFQSSYDQDELGTIL SVNRDPGKIPTYIGYAMLTLGLLWSFFAKNGRFYKLSRYLKAQNLAFIACLALGAFSLQT PLYAEETNTTQQQNLPPITQESILDLIATLKQNSNQHSKIFGKLLVQDFGGRVKPMDTLA MEYIHKMTKTDNFLGLSNMQLFLGMMMYPNEFKKVKMIAIKTPKLKKLIGVDENQNYIAF EDVFFKDQYKLLNLLEEANRKKPAMRDQFDKDIIEVDERINVAYLIYTAQSLRIIPDFNQ ETSTWYAPTEAMAGFNETDREQIHKLFRAYFASFHQGLVENNWENANLAIEALSQMQHKF GADLLPNPSKIDLEIFLNHYNIFDNLTPLYIVAGIILFIIVLIQIFRNKNSDVLATKILH WFITLLVLCHTIGLGVRWYVGGHAPWSNAYESMIYIAWAAGVAGVFFFKRSYLALATSSF LAGISLFVAHLGFMNPQIGNLVPVLKSYWLNIHVSIITASYGFLGLCFMLGAITLGLFIF RNKKYPQLDKTILTLHTINEMAMILGLALLTVGNFLGGVWANESWGRYWGWDPKETWALI SIVVYIIVLHARFLPKGDNPYIFASLSVVAFYSILMTYFGVNFYLSGLHSYAAGDPIPVP VFLYYFVAATFLLIILAARKSDLDSPKLNF >gi|197325098|gb|DS990368.1| GENE 195 204032 - 204628 723 198 aa, chain - ## HITS:1 COG:jhp1004 KEGG:ns NR:ns ## COG: jhp1004 COG2143 # Protein_GI_number: 15612069 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin-related protein # Organism: Helicobacter pylori J99 # 4 190 10 208 223 123 38.0 3e-28 MKIKNLLYVLILAFLIVGCEEKLDSNIISSGAKSTQEQLDALQNVDKNSYKEVADVFLDT QKISTKDNKPYFLVFSANGCIYCDKLKALIRDDNEIKKILKNDYSPYYINLSYSKSHSVD FLKDIQETSELGRLYNIKPTPTLVFVSSHGKTLFVYPGYMPKERFLATLEFLKTPNLETK DEKEIAKELQELFQAQNI >gi|197325098|gb|DS990368.1| GENE 196 204728 - 205693 917 321 aa, chain - ## HITS:1 COG:HP0376 KEGG:ns NR:ns ## COG: HP0376 COG0276 # Protein_GI_number: 15645004 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Helicobacter pylori 26695 # 8 317 22 332 334 306 49.0 5e-83 MQNTKNTAIVLLNMGGPNSLDEVEVFLKNMFNDPYILPIKSNFFRSMIASFITYKRLEES KNNYRKIGGKSPLVEHTFKLCQKLENLDDNYFYTYAMRYTPPFANLVAKELQSKNIQEVV LFSLYPHFSYTTTQSSYDDFLKALKNLNYQPKVHFIKHYFDNQSYNKAILSRIKETLGNE DSKEFHLIFSAHSLPQKNIDKGDPYQKEILANVDTLKEMLPKAGLEFASIEVAYQSKLGP VKWLEPSLGDCLKNYKGKKLIIYPIAFSLDNSETDFELSIQYKQEAEKIGILDYRVSKCL NDSEDFARFILEQTREILKTN >gi|197325098|gb|DS990368.1| GENE 197 205693 - 207000 1271 435 aa, chain - ## HITS:1 COG:no KEGG:WS0783 NR:ns ## KEGG: WS0783 # Name: not_defined # Def: putative periplasmic protein # Organism: W.succinogenes # Pathway: not_defined # 26 429 21 423 429 452 54.0 1e-125 MKLLFFKIFILCFLSLQFINAKNTPFNFYELKGDNDGATLLVIGGIHGDEPGGYFAPSIL ANSYHILKGNVLVVPNLNPDSILAFKRGIYKDMNRKFAHIAPNDPDFDNVARIKEIIINP KVNFVINLHDGHGFYREKWENSIFNPKAWGQTYVIDQKTLDNIPFGNLDEIAKEIENKLN KELHYDFHTFGVRNTETRFKDEEQQNSLTYYAITHLKPALAIETSKNIQELPLKTLYQLN SIEALMQILGIEYTRDFTLDLKGVENKLKDYKTLNINNNITLELSEIKNTLNFIPLLKKG NQFTFTHPLGRIKETKNGYEVYIGHQKIALLKPDYFPMQCSIEDMEIQIDKNITKKVKFG KTLEFQEGFLIKKNPKARVNVIGYSKKGVVSEEEIFLTATDIDKNFSLDKKGKVYRIEIY EGKNFCGMINVKKVD >gi|197325098|gb|DS990368.1| GENE 198 207017 - 208024 1007 335 aa, chain - ## HITS:1 COG:HP0921 KEGG:ns NR:ns ## COG: HP0921 COG0057 # Protein_GI_number: 15645537 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Helicobacter pylori 26695 # 4 333 1 329 332 320 51.0 3e-87 MEKIKVFINGFGRIGRCIARVALCEMQDKIEIVGINDSADSQMLAYLFAHDSIHQTHKIT LESYNPQTNHFTFNGVEIPFSNAKTPQEIDICGADIVIEASGLFLESELVECHLKKGAKR VIFSAPAKDSTKTFVLGVNHQDYKGEKIISNASCTTNALAPVIKLLDENFGVKNGILTTI HSYTNDQNLIDSVHRKGDFRRSRAAGINIIPTTTGAAKALHLVLPQMKNKLHGHSVRVPV ADVSMVDLNINLLQNTTQESINTLFKQASISHLKGILGVDESYGVSQDFVNCPLSGVVAL DLTFVLEDMAKIMVWYDNEWGYSHRILEMACFILK >gi|197325098|gb|DS990368.1| GENE 199 208153 - 208860 963 235 aa, chain + ## HITS:1 COG:HP0920 KEGG:ns NR:ns ## COG: HP0920 COG0670 # Protein_GI_number: 15645536 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Helicobacter pylori 26695 # 1 234 1 229 230 215 61.0 4e-56 MSLYDRKPMNNYGQYAENSFVQSDMALVSFVKQTYQLFAGSLLAATIGAYIGISALGGVV AQYYIGFVILEFALLFGLFFTKAKPGINLLMLFAFTFVSGLTLTPILSRVLGMPGGASIV AQAFLLTTAIFGVMSIFALRTTKDLASMGKILFIALIVVVIGSLINLFLGSPLLQVAIAG VSAILFSIFIAYDTQNIVRGLYDSPVTAAVSLYLDFLNLFVSLLQLLGIFGSREE >gi|197325098|gb|DS990368.1| GENE 200 208866 - 209276 306 136 aa, chain + ## HITS:1 COG:alr1343 KEGG:ns NR:ns ## COG: alr1343 COG0352 # Protein_GI_number: 17228838 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Nostoc sp. PCC 7120 # 3 129 38 165 379 82 38.0 2e-16 MNQLSDSELRILDANLNRLREGIRVIEDILRYSFNEKALVLKLKNLRHSCKLKNLHSLLN SRDSQNDVLKTSIPQEQIRKGLKDIVVANFKRTQESARVLEEILKLQKIEESEQFKNIRY TLYVLEKEIFNTFFMN >gi|197325098|gb|DS990368.1| GENE 201 209266 - 210162 905 298 aa, chain - ## HITS:1 COG:Cj0385c KEGG:ns NR:ns ## COG: Cj0385c COG0697 # Protein_GI_number: 15791752 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Campylobacter jejuni # 7 273 10 289 310 146 36.0 5e-35 MYQNKQAIIAMLIAALLFTFMGMFVKILTPNLPAIEVAFARNFFGLIWILIALLIKPPKT PQGGRPFILLFRGFAGGSAMMAYFYNMSVMPLGIAFAFSYTSPIFLALFSVFFIRQKVSF KVWIAIFLGFSGILLISNPQNLHLSLWGLTIGIYSGIGAALAYLSVAELAKNYDPRIIIG SLMFFGSILPLFTQLVPYENYPISLFMPFVMPTSKEWILILGLGVVSTYAQIYLTKAYGL GNPPLIGAISYVTIFMATLAGIILGDQIPHGFIIVGMVLIACGGILAALSSKRKKSNS >gi|197325098|gb|DS990368.1| GENE 202 210271 - 211671 1792 466 aa, chain + ## HITS:1 COG:jhp0773 KEGG:ns NR:ns ## COG: jhp0773 COG1160 # Protein_GI_number: 15611840 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Helicobacter pylori J99 # 7 458 10 461 462 474 54.0 1e-133 MDKFYGTIAIMGRPNAGKSSLFNRFCKSRIAITSEIAGTTRDVKKANVSLKDTPFLLLDT GGLDESDSLFVQVTKHSHNAGESADLILYVVDGKMPPNPLDKKIFYTLQKKNPNIFLVVN KIDNDKEQSNAWEFSEFGACHLFFISVSHNRGIGKLEESIVRLLKKDSLTQLFNAVDEEE SLEEFLETSAIQEKEEVINIGIIGRVNVGKSSLLNALLGQERSVVSSKAGTTIDPVDEMG EIEGRKVNFVDTAGIRRRGKIEGLEKFALNRTREILKRSDIAVLVLDASSPFVELDEKIA GLIDEFKLGVIVVLNKWDIAHKDYKGIMEDFRLRFKFLDYAPVLTISAKNGRHIQKLEQE ILKVYEHFSYRIPTAKINEIIKEATMRHPIPSDRGKIVKVYYATQFETKPPQIALIMNRP NSLHFSYKRYLVNFLQERFDFSGTRIIFIARGKNAFEETKQKNFEE >gi|197325098|gb|DS990368.1| GENE 203 212067 - 215072 1865 1001 aa, chain + ## HITS:1 COG:SA0189 KEGG:ns NR:ns ## COG: SA0189 COG0610 # Protein_GI_number: 15925899 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Staphylococcus aureus N315 # 2 976 4 917 929 450 33.0 1e-126 MKSEKTIEQSFIKKLKELKYIYREDIKDKASLEENFRKHFQELNRVRLSDSEFVRLKESI ITPDVFSAAKILREINTFKRDDDTPLQYTLVNTNDWCKNEYEVINQLRINTENSHHRYDV IILINGIPVVQVELKSLQITPKRAMEQIVDYKNDPGNGYTNSLLCFMQLFIVSNESNTYY FANNNKEHFAFEADEHFLPIYQFADKDNKKINHLHDFSQAVLRKCALGELISKYMVLVAS EQKMMIMRPYQIYAVKAIMDCIEQNRGNGYIWHTTGSGKTLTSFKASTLLKDNRNIAKCL FVVDRKDLDRQTREEFNKFQEGCVEENTNTDTLVKRLTSKDYRDKVIVTTIQKLGLALDN DNKQSKEKKKKGELTYKERLAPLKDSRIAIIFDECHRSQFGENHKAIKNFFPKAQLFGFT GTPIFEENATYKQIDGTIGSYTTTNDVFEKELHAYTITHAIDDRNVLRFHIDYFKPKNDR EASRINEEQQKKAIVQTILSKHDAITNNRRYNAILATSSINDAIEYYNLLKEAKENCINA DDSKFKPLNIACIFSPPAEGNKDVQQIQEDLPQEKEDNQKEPDKKKKALMEIIKDYNKQY GTSHDIGNFDVYYQDIQQRIKDQKYTNADYPHKNKIDITIVVDMLLTGFDSKYLNTLYVD KNLKYHGLIQAFSRTNRVLNDTKPYGNILDFRSQSDEVDKAIALFSGENNSNRAKEIWLV DPAPKVVENLDKAVSELEKFMESQGLECKPEEVNNLKGDAAKCEFINKFKEIQRLKTQLD QYTEIEEKDAKRIEELLPEDTLRAFRGAYIDVAQRLKAEQGKENEDKNSEVEQLDFEFVL FSSAIIDYDYIMALIAKYTQTEPEKQKMNKEQLINMLSATSNLLDERKDIIEYINSLQVG MALDEKGIKAGYQKFREQKNNQEINTIAEKYKIEIQSLKVFIQEIVDRMIFDGEKLGDLL APLDLSWRERTQKELDLMDDLIPLLKKLADGREIIGLNAYE >gi|197325098|gb|DS990368.1| GENE 204 215065 - 216312 484 415 aa, chain + ## HITS:1 COG:SA0392 KEGG:ns NR:ns ## COG: SA0392 COG0732 # Protein_GI_number: 15926110 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Staphylococcus aureus N315 # 2 407 3 402 403 123 29.0 6e-28 MNKKKEIVPKLRFSEFSKSYWGITQLNMLAGKITERNKDDSIKRVFTNSATEGVIDQEEY FDRNIANKNNLTDYFVVEKGDYVYNPRISTTALVGPISKNKLGIGVMSPLYTIFRFKNKG NDFYEHFFLTNLWHAYIKNLSNTGARHDRITISVDNFMKMPLPYASPEEQQKIADCLSSI DELIDTESRKLKALEKYKKGLMQKLFPTEGKTLPEWRFPEFQGCGEWKYEEIGNIGEVIT GKTPSTSDAALWDGDIQFVTPTDITENKYQHHTQRTVVKTPKMKVLPKYTIMYTCIASIG KMALSLYPCITNQQINSIVPKSFYNNEFIYYSLLQKTFLIKAGFANSTLPIINKTDFSKI QVPVILDKKEQEKIAGCLSEIDTMITEQLKKIERLETHKKGLMQGLFPSLEEADV >gi|197325098|gb|DS990368.1| GENE 205 216309 - 217616 743 435 aa, chain + ## HITS:1 COG:no KEGG:Dtox_2620 NR:ns ## KEGG: Dtox_2620 # Name: not_defined # Def: hypothetical protein # Organism: D.acetoxidans # Pathway: not_defined # 1 433 1 436 439 577 69.0 1e-163 MSINVPEKLSKQEYNDLLNDLKKYDLTKYTDLIKENYKKPKGETEYFLKGGITEPIRINL DYVLKRISDKQVFDNLQEIVQYLRMLLEDKKYVLLFAYNGTGKTRLSAEFKTLGQTLNEE TGEKTADTLYYNAFTEDLFYWDNDLENNTKRFLKLNSNSRFFSGLRDLEMESRIRPFLHR YADFDFTIDYNEYRISFYRNVVTDEVSQRVDNIKVSRGEENIFVWCFFLAIMQLVVDKVE SYNWVKYIYIDDPISSLDDNNAIAVASHLATLVSGSDIKVVVSTHHALFYNVLCNEIANP ERLFFQKLSGTRYILKDTSKTPFFHHVALLKELKKAADSGELYTYHFNILRNILEKTASF HGYKDFSSCLRKEDEDSVVYRRIINLLSHGNYSIFDPKEMVKENKEYFQKILNDFLEDYK FNQNIFDTDQTQEEN >gi|197325098|gb|DS990368.1| GENE 206 217616 - 219406 1274 596 aa, chain + ## HITS:1 COG:alr0499 KEGG:ns NR:ns ## COG: alr0499 COG0286 # Protein_GI_number: 17227995 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Nostoc sp. PCC 7120 # 5 593 8 534 537 380 40.0 1e-105 MNDIQQKKLGSTLWAIADKLRGAMNADDFRDYMLSFLFLRYLSDNYEEAVKKELGSDYHK SELEIQKNGANQDAYIDELKNIIIKHSNSLSPKELGLQEDEKDQEKIKKARQDFIDYNNK MLYSHNVIPLAVWYIRNLDQVDMLEKQMRRKIHYVIKPAYLWSNIYELARTQNSQLLKTL QRGFKYIENESFESRFRGLFSEVNLDSDKLGKNYSERNILLCQVITEIAQGLSKFPNETD LLGDAYEYLIGQFAAGSGKKAGEFYTPQQVSTILSRIVSLDSQDPSTGKKSKLKNILDFA CGSGSLLINVRKQFGANSIGQIYGQEKNITTYNLARMNMLLHGVKDSEFQIHHGDSLLND WNILNEMNPAKKMQFEVVVANPPFSYRWQPKEEMAEDFRFKNYGLAPKSAADFAFLLHGF HFLSDDGTMAIILPHGVLFRGGVEEKIRTKLLEDGNIDAIIGLPANLFFSTGIPVCVLVL KKCKKYDDVLIINASEYFEKGKRQNILLPEHIDKIIETYQYRKEDDKKYSRRVSMKEIKK NGYNLNISRYVSTAPEEEIVDIEEVWDELEKIENEIKKAKAKHNEFLKELGLKLIP >gi|197325098|gb|DS990368.1| GENE 207 219859 - 220335 416 158 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|253827183|ref|ZP_04870068.1| ## NR: gi|253827183|ref|ZP_04870068.1| hypothetical protein HCAN_0531 [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0531 [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] # 1 158 1 158 158 239 100.0 7e-62 MSNRIENYPNIEKLQTILNELVFHQIHQAWIDKKIPQYSLIILERWAEIYPNTIKNLGMS DLMTLALPQAQMELEILESVEADKKREQGLTDREILAEEQINLNQYIAIEPQIYSPLFQE MMMKDKEQIQEETINDQYWKLQQEMMDMKEEVSNLDKN >gi|197325098|gb|DS990368.1| GENE 208 220586 - 220879 314 97 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417844|ref|ZP_03655850.1| ## NR: gi|224417844|ref|ZP_03655850.1| hypothetical protein HcanM9_01073 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 97 1 97 97 197 100.0 2e-49 MKDKRKWAGVVIPTIPYLMTSIFANPLMTLYCKKTNIAKEIWGEGHRLLTAHSKTERGER GQLRQEFNDRDFLNSARNIIPQQNKYVNDFKAKWLIL >gi|197325098|gb|DS990368.1| GENE 209 221320 - 221766 274 148 aa, chain - ## HITS:1 COG:HP0074 KEGG:ns NR:ns ## COG: HP0074 COG0597 # Protein_GI_number: 15644704 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Helicobacter pylori 26695 # 3 148 6 150 157 116 52.0 2e-26 MPKQSLVSFFLALFLVLLIDQAIKWWFVQSNFEYQGSVISLVLVYNQGVAFSLFDFLKEW LKYLQILLLIGIFIYLWKHKEIFKTYSLPIGIIFGGGISNILDRFLHIGVVDYIYWHYKF EFAIFNFADMMINLGVFLIILQTLFKKK >gi|197325098|gb|DS990368.1| GENE 210 221766 - 223103 1967 445 aa, chain - ## HITS:1 COG:HP0075 KEGG:ns NR:ns ## COG: HP0075 COG1109 # Protein_GI_number: 15644705 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Helicobacter pylori 26695 # 1 444 1 444 445 583 65.0 1e-166 MKLFGTDGVRGEAGVKLNAFCALKLGIAAGIYYREHSKTNRILVGKDTRRSGYMLENALV SGLTAVGYEVIQIGPMPTPAIAYLTEDMRCDGGIMVSASHNPFMDNGIKFFGKSGYKIDE KDEEMIEKIYHNESLLESAQKSGKEIGSSKRIDDVVGRYIVHIKNSFPKDLSLHGIRVVL DCANGAAYKVAPTIFSELGAEVFVINDSPNGFNINENCGATQPLMLQEEVRKVRADIGFA LDGDADRLVVVDEKGEVVHGDKLIGVLALAAKQNNTLKNNTAVATIMSNYALEEFLKENG IKLIRSNVGDKYVLENMLANNLNFGGEQSGHIIFSDFAKTGDGLVSALQTMAYILQSKKT ASKALDCFKLYPQILKNINVQSKPNLDTLENYQTLLKEIESKKIRHLIRYSGTENKLRIL LEGKDTKTLEKVLQECETFFKGKLY >gi|197325098|gb|DS990368.1| GENE 211 223211 - 223486 443 91 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417847|ref|ZP_03655853.1| 30S ribosomal protein S20 [Helicobacter canadensis MIT 98-5491] # 1 91 1 91 91 175 100 4e-42 MANHKSAEKRIRQTKKRTERNRYYKTRIKNMTRSLKEAIEAKDLSKSQEVMKQINQAFHS YVSKGILTKNTAARKVSRLNSSVKKLALANA >gi|197325098|gb|DS990368.1| GENE 212 223513 - 224583 1538 356 aa, chain + ## HITS:1 COG:HP0077 KEGG:ns NR:ns ## COG: HP0077 COG0216 # Protein_GI_number: 15644707 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Helicobacter pylori 26695 # 1 348 3 350 352 490 76.0 1e-138 MLASKLKPFIDRYDEISNLLIQTEILSDIKRMTELSKEQSDLEKLVQKSKQYLKNLESIE ENKGLLDDKELGDLAKEEIKEAELENQNLESEIKILLLPKDPNDEKNIYLELRAGTGGDE AGIFVGDLFKAYIRYAESKGWKVEIISSSENNVGGYKEVIALIKGKGAYSRLKFEGGTHR VQRVPETESQGRIHTSAITVAIMPEVDDVEVVINPNDLRIEVFRAGGHGGQCVNTTDSAV RITHIPTGISVSMQDEKSQHKNKDKALKILKARIYEAELEAQMEQNAEARKSQVGSGDRS ERIRTYNYPQNRLSDHRIGLTLYSLEEIMLNGDLDQVIEPIIAYFQAEALQNSGIA >gi|197325098|gb|DS990368.1| GENE 213 224964 - 225395 486 143 aa, chain + ## HITS:1 COG:BH2141 KEGG:ns NR:ns ## COG: BH2141 COG1832 # Protein_GI_number: 15614704 # Func_class: R General function prediction only # Function: Predicted CoA-binding protein # Organism: Bacillus halodurans # 5 141 7 135 137 99 38.0 2e-21 MLKQDLQIKQILQEAKTIAILGLSPDESKPSNKVAKYLLEQGYRVIPIYPKGGEILGITA YRTLQEAFSSEAQRGGIDILDIFRKSEAILGIAKEVLSLEVKPKCVWVQLGLFSQESKEI LENQGITYFENLCIKIEHQRLFE >gi|197325098|gb|DS990368.1| GENE 214 225392 - 226600 1467 402 aa, chain + ## HITS:1 COG:Cj0828c KEGG:ns NR:ns ## COG: Cj0828c COG1171 # Protein_GI_number: 15792166 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Campylobacter jejuni # 1 401 1 401 403 447 60.0 1e-125 MISLAKIMDASRRLKGVVEHTKLAFAPKLSQLSGAKIYVKQENLQNTGSFKLRGAFNKIA SLTTEERKKGVIASSAGNHAQGVAYSAKHYGIKAVIVMPESTPLLKVMGVKELGAEAILY GNNYDEAYAYALEYAQKNNLHFIHPFADDEVIAGQGTIALEMIEDQNALTTIVVPIGGGG LISGIAAAYKQMLPSVRVIGVVAQGAPGMYHSFYKKSIQTTKSVRTIADGIAVRDVNEKN FNYILECVDEIVMVDDEEIANAILYLLEKQKLVVEGAGASVVAALLHQKFKINRNESVGL VLSGGNIDVTMLGVIIEKGLVRSHRKMRFSVVLVDKPGSLQSLSNLLSKLGANIVKIDFD RTSTSLGYGDANVVVMLETKGKDHQDEIRKELRKNGYEFIEM >gi|197325098|gb|DS990368.1| GENE 215 226608 - 227786 681 392 aa, chain + ## HITS:1 COG:no KEGG:WS0133 NR:ns ## KEGG: WS0133 # Name: not_defined # Def: putative integral membrane protein # Organism: W.succinogenes # Pathway: not_defined # 10 392 10 395 397 243 40.0 1e-62 MAENKKAYLSLFLILLIDFFLLLWVGKNLSISFYETQSFFNPHDFAGYYAKLSVFLFGQS DIGLRSGFLILHLCNGILMFLLAKTFLKRPSDAVFCALLFLLLPGVNAGAILISNSGIVI FFSLLLCLWYQKTQKFPYWLLLIMVFVDKSFSLVFLALIFYGIVHKNTFLVFASLIFFAV NMYLFDLGIGGHPESHFISVIGHLLLIFSPLVFLYFLYMIYRFANSKTKPLMWYIVVVAL SFIFIFSLRQRVDIESFAALLMVGIPLMVSLYYSGLRVRLPKFKGRYKIPFKVTLIILLC MTGLLIFSKPLFVVLSNKENHFAYRHYIAQELAKELKKRKIKAVRTEVRMQERLLFYGIE EGGRKLSQIYKKDSIKIPIIYYGKEVTAFYVQ >gi|197325098|gb|DS990368.1| GENE 216 227752 - 228450 339 232 aa, chain + ## HITS:1 COG:no KEGG:WS0134 NR:ns ## KEGG: WS0134 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 22 232 1 212 214 74 27.0 4e-12 MAKKLPHFMFNKAFSLFEILLVLGILGILSGVGYLFYPKSALNLAQEQIVNHLNYTRFLA LNASKDITQSLFCQSDFCQDERSRFEESYWRLQFSNLKNIEWAYSIFSDSARSSKTKNFD DRPMDSFEVARDPMSGKYLSVYTYNNTKFANTLREGDLSISKRYGVSKVQMYGGCGNQSG GRAIFDNRGFLRCKKTGEKVSFPTKEVVLELSDHFGNSLRVCIFENGLVKKC >gi|197325098|gb|DS990368.1| GENE 217 228913 - 229299 413 128 aa, chain + ## HITS:1 COG:Cj1711c KEGG:ns NR:ns ## COG: Cj1711c COG0030 # Protein_GI_number: 15793014 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Campylobacter jejuni # 1 116 129 243 266 88 46.0 3e-18 MTQKEVALKFCAIQNQSDFSALSVLAQSVGEAKMLFEVPPSAFVPQPKVTSAVFLIEKNH IPSSDFLVKLEELLKIAFSAPRKTLFNNLSKVYSKEKIMETLETLGIVSNKRPHEIDTTD YHRLLKLL >gi|197325098|gb|DS990368.1| GENE 218 229313 - 231292 2554 659 aa, chain + ## HITS:1 COG:Cj1710c KEGG:ns NR:ns ## COG: Cj1710c COG0595 # Protein_GI_number: 15793013 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Campylobacter jejuni # 11 656 10 661 664 772 60.0 0 MEEKETQNTQNISSQEITETQKEPNKRRFRPRNNQQGEEKQSQNGQHRHNQRFSKKSQNT AQGDQKFRNKNMGSKESSHIDLKKAVEANARVHQNSLTTYSKAHFNPNARVRITPIGGLG EIGGNMTIIETQNSAIIIDAGMSFPDSDMHGVDILVPDFSYLEVIKDKIAGIVITHAHED HIGAMPYLFKKYQFPIYGTALPLGLIGSKFDEHGLKKFRSLFRPVEKRKPIRIGEFEIEW IHITHSIVDSSALAIKTEAGVIFHTGDFKIDHTPIDGYPTDLNRIAYYGEQGVLLLLSDS TNSHKSGYTPSEASVGPAFDMLFSRAKGRVIMSTFSSNIHRVYQAIQHGLKYGRKVSVIG RSMEKNLEIARVLGYIDLPQNIFIEAHEVAKYADEEVLIVTTGSQGETMSALYRMATDEH RHIKIKPSDIVILSAKAIPGNEGSVSNILNFINKAGAKVYYQDFSEIHTSGHAAQEEQKL MLRLVKPKFFLPVHGEYNHILKHKETAISCGVDEKNIYLMEDGDQVEVAHNYLRKVRSVK TGKTYIDNQVNATIANEVVLDRQNLAENGIVSVMVQIDKAKNALIGKPRVQTMGIIANKD IISFNKEIEEFFILFVKNCKKELYNNQKAMENEVRNALRKLMFKKTKRYPIIFPNIIFN >gi|197325098|gb|DS990368.1| GENE 219 231334 - 232074 811 246 aa, chain + ## HITS:1 COG:PA5469 KEGG:ns NR:ns ## COG: PA5469 COG0861 # Protein_GI_number: 15600662 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Pseudomonas aeruginosa # 3 244 2 240 254 237 57.0 1e-62 MFEWILSAEMWVALITLIGLEIVLGIDNIIFIAILVGRLPKEQRQRARIFGLGLAMLTRL MLLLSLFWIMKLTTPLFSVFSQEISGRDIILILGGLFLIAKSTLEIHHDIDNAGEKSDEN LLKEGAKRGFFSVLIQIAILDIVFSLDSVITAVGMVNNIEIMMIAVIIAVLVMMLASKSI SEFVDENPTIKILALAFLILVGVTLVAEGLEFHISKGYIYFAMAFSLGVESINIYIKKKH ASQRKS >gi|197325098|gb|DS990368.1| GENE 220 232078 - 234768 3128 896 aa, chain + ## HITS:1 COG:Cj0338c_2 KEGG:ns NR:ns ## COG: Cj0338c_2 COG0749 # Protein_GI_number: 15791706 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Campylobacter jejuni # 314 896 1 580 580 530 50.0 1e-150 MATKTLTIIDTFGFLFRSYFALPPLKNHEGFPTGLLTGFAKLIMQLHKDYPKDYLVFALD SKGENFRKQIDPLYKANRPEVPQDLKLQLEVAIRWVEDMGFKNISIEGFEADDVIASINK QVNKLDVNVRIISHDKDLYQLIDKDTFLFNPSKKEEIREEECKEKYGVYPSQFVDYQSIV GDSADNVPGVKGIGAKGAVNLLNNFGSLDSIYQHLDEIPQKRTRELLSAAKDDAYRSREL VKLRDDLLEDFDLSECEMPQDSPLLRILDSLREYDLNSVLKKLHKNPITKKKISQIESQE NEQEKKFIYKTHLIDNDSKLKEFFSTLPKESIFSFDTETTSLDVRKAKIVGFSFSVNGVD CYYIPIAHNYLGVESQVSLECARECIEQIFQSQYVIGHNLKYDLEILKTNFDFVLEDFSK VRDSMLLAWLLQSDTLCNLDFLMKKYFNHEMIHYKDIVGKNENFSNILIQHACEYASEDA AACYQLYFKLRGLMDESLLEIAQKVEFPFIQSLMNMELSGIKIDLEYFLGLNAETREKLH QISEEIFVLANKRFNLNSPQQLASILFDDLKLEASKKTKSGYSTSELVLNSLYDSHPIIP KILEYRESFKLYSTYIEPLIEHAKSDLEHRIYTSFMQTGTSTGRLSSKNPNLQNIPVKTL EGRRIRKGFIAKENCLLISLDYSQIELRLLAHFSQDKAMIDAFLQDADIHLETAKKIFGE EMAQEKRAVAKSINFGLIYGMGPKKLSETLKINFQEAKTYIQNYFTSFPMIKNFLKEQEE FILENGYSKTLLGRMRKFDFEGVQEYQKAAFLREGINAIFQGSAADIIKMAMNKIMHSSL ESKLLLQVHDELIFEAPKEIASKEAKKIALIMENIATLRVPLKCSISIGENWGELK >gi|197325098|gb|DS990368.1| GENE 221 234777 - 235319 514 180 aa, chain - ## HITS:1 COG:no KEGG:WS0571 NR:ns ## KEGG: WS0571 # Name: purH # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 25 167 21 165 173 135 46.0 6e-31 MKFFKFALLALFLLALPLFSLVFTPVALQAILKSIYAPALFGVYSKDFGKLYCQLYGVAT PSKNFQSEICEIDPKTLKAMRHFAMNYTQNKIFSEQQYFLSYQNGWCFLQNGGNLFNEQI IKDGYGVVQYFDLTQGEVIANLETLENVARNERKGLWKEWAKEMECIKSTLRGIAQENLE >gi|197325098|gb|DS990368.1| GENE 222 235316 - 236869 725 517 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 3 513 8 522 563 283 33 9e-75 MKLLEIKDLCLKLGNFNLKNISFELEEGSILGIVGESGSGKSMLGNAILQLLPNLQYQKG EISFLGQNLLQYSPIKMQNIRGKEISYIFQEPLSALNPLHKIKKQLAETLLIHNPNLSKT DLQSKLIELLENVHLPQKVLESYPYKLSGGQRQRICIAIALANSPKLLIADEPTTALDST TQEQILLLLQSLQKKLHLSILFISHDLLVISKLCKTILVLKQGEIIERGPTQDIFKNPQN PYTKLLVQSLHFSYNTHLDFGKPLLRVQNLQVSYPTKKSFFGKTLESFEALKPLSFELRE GESLGIIGESGSGKTSLANAICRLVESKGKVDLLHQDFFSLQGEKLRDFRKNIQMIFQDP FSSLNPKMTIAQILAEGLIAHHIKDHQARIKQALLDTNLDESFLERYPNELSGGQRQRVS IARSLILKPKVLLLDEPTSALDKNTQKQILNLLLRLAQQYRLSYLCISHDLSVIATLCQN VIVLKNGEALECGKTQEVFKNPKNPYVQNLLKASGIQ >gi|197325098|gb|DS990368.1| GENE 223 236850 - 237875 1139 341 aa, chain - ## HITS:1 COG:PA1808 KEGG:ns NR:ns ## COG: PA1808 COG4239 # Protein_GI_number: 15597005 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Pseudomonas aeruginosa # 7 330 9 333 339 390 60.0 1e-108 MGFFTLRHYHTFKANKKAFYSLWIFLAIFIISLNAEFIANDKPLYIRYDNQNYFPIFKNY PETTFGGDFESEANYNDPYLRDLINQKGFLIMPLIPYSYDTIIYTLPSPAPTPPSLLNPL GTDDLGRDVVARLLYGLKTSILFAFILTFFSSIIGLVVGAICGYFGGKIDLFGQRLIEIW SGMPILFILIILASLLQPTFWTILFAVLLFSWITLVPFVRAEFLKVRNLDYIKAAKMLGV GHYRIIFYHILPNALVALLTYLPFILCGSITTLASLDFLGLGLPPPNASLGEILAQGKNN LNAPWLGLSGFFTLSILLCLLVFIGEGLRDCLKGNNETFRN >gi|197325098|gb|DS990368.1| GENE 224 237877 - 238914 769 345 aa, chain - ## HITS:1 COG:HP1251 KEGG:ns NR:ns ## COG: HP1251 COG4174 # Protein_GI_number: 15645865 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Helicobacter pylori 26695 # 1 344 1 347 348 411 63.0 1e-115 MGIYILKRLLLIIPTLLGIITLNFFIIQAAPGGPVEQMIAKLESHNLQGEVASGGIYKNQ GLDSEMINKINALYGFDKPLLERYFLMLKNYVFLDFGESFYKNASVLDLLVEKLPVSISL GLWSTLLIYLISIPLGIKKAIHNGTPFDHFTSTLIIIGNAIPTFLFALILIIFFAGGTYF SWFPLRGIIGDNFESLSLIGKIKDYFWHITLPVIALSIGGFATLTLLSKNSFLEEIHKQY VKLAFAKGLNQNQVLYRHIFRNAMLLILSSIPQALLGILLTGSLLVEIIFSLDGLGLLGY ESIITRDYPVIFGTLYLFTLFGLIITLISDLLYVLIDPRIHFQKV >gi|197325098|gb|DS990368.1| GENE 225 238925 - 240736 1738 603 aa, chain - ## HITS:1 COG:HP1252 KEGG:ns NR:ns ## COG: HP1252 COG4166 # Protein_GI_number: 15645866 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Helicobacter pylori 26695 # 30 591 27 593 594 596 54.0 1e-170 MRYLFFLFFFALYLFSADTYSNNAFAINGEVKYKNFKHFDYVNPDAPKGGHIKEYAIGTF DSFYDFLLKGTSAQGLHLIYDTLMVRSLDEPSSQYGLIAKQIQRAKDNTFVIFHLDPNAR FNDGKEITAFDVEFSFNLIAHGENPSMNRYYADIKEAIVVDKHTIRFNFKDSKNRELALI LGDLPILPKHYYETTTPKANPLRIPLGSGPYKIESFEAGRSITYKRVENYWAKDHPTRIG YFNFDRITFDYYKDDSVALEAFKAGRYDYRQEMSAKNWALGYNGKALKNGEIIKQEILHS LSSGMQGFVFNLRKNIFQDIKVREALGLAFDFEWSNKNLFFNQYARTTSFFDNSEFASVG IPLGEELKLLESFKDNLPQELFTQSFKLPTTQGNGNNRDNLKKAQKLLKEAGFVTKNGKL YDKNNQPFVFELLLVSPAMERVAIPFAKNLQILGIEMKIRLVDISQYINQLRTFDYDMIV GVFPQSLSPGNEQSFFWGSSAADAEGSYNYAGIKNPVIDSLIQKVINAEDYQDLLTATRA LDRVLLWNYYVIPHYHTKTFRIAFWNFLEHPKITPIYDVGFETWWVNENKLLKIQENYPS FRR >gi|197325098|gb|DS990368.1| GENE 226 240863 - 241411 676 182 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0342 NR:ns ## KEGG: JJD26997_0342 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 3 181 6 184 184 169 51.0 6e-41 MTKQFRNIHIYLSLFFLPVALMYALTGILYISGFDQDSGATKNTYTLNAEIPKGGEAEAM LNYLQNNNIPLPSKTEPKVNKSGALSVGGTHYSASIAKSGENVWTITTLKRSFIGDLIML HKAKAKWYFNILAIGFGITLVLLYLSGLMITLFNSKKNRGIQYGTIMAGIVVSVVLGVLS LS >gi|197325098|gb|DS990368.1| GENE 227 241451 - 242569 1505 372 aa, chain - ## HITS:1 COG:Cj1260c KEGG:ns NR:ns ## COG: Cj1260c COG0484 # Protein_GI_number: 15792584 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Campylobacter jejuni # 3 372 2 372 373 345 52.0 8e-95 MEEFDYYEVLEVQRNASGDEIKKAYRKMALKYHPDRNPDDKEAEEMFKKVNEAYQILSDK EKRQIYDTYGKKGLESSGFGFGDMGESIFDIFNSVFGGNFGGFGGFSQRSKKNEKYPRDL GIALELTFQEAVFGCKKEIEILYKKSCDSCQGSGAKDGKVETCKVCKGSGRETFSQGFMT FAQTCSKCNGSGQMISEKCEKCHGKGYKEEKEKFEVNIPEGVDSHNQIRVTQRGNLMPDG TRGDLYIEIQALEDEHFIRHHNDIYLEVPVFFTLVMLGGTIKIPALTKELELKIPIGVKD KQQFVFHGEGVKSVNGNKKGNFIAVVNITYPTKLDEKQKSLLNELHQSFGYEEAKPINCL EGLVDKIKNWFK >gi|197325098|gb|DS990368.1| GENE 228 242753 - 243325 573 190 aa, chain + ## HITS:1 COG:HP0925 KEGG:ns NR:ns ## COG: HP0925 COG0353 # Protein_GI_number: 15645541 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Helicobacter pylori 26695 # 8 189 11 192 193 194 48.0 1e-49 MKSLPESFVKLVESLEKLPSIGKKSAMRLAYFLAFEDKFSALQIAHNIEHCMQELRICEE CFGISKEPVCEICSNAMRNNGELCILTSPKDIFLLEESGEFHGKYFVITSLEALNLKLLE NKIIKDKVTEVIFALSPSLKSDSLMLYLEDKLSHLDLQFTKIAQGVPTGVSLENIDQLSI IRALQSRVKI >gi|197325098|gb|DS990368.1| GENE 229 243337 - 244536 1613 399 aa, chain + ## HITS:1 COG:BH4038 KEGG:ns NR:ns ## COG: BH4038 COG3263 # Protein_GI_number: 15616600 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain # Organism: Bacillus halodurans # 12 394 9 392 490 263 42.0 3e-70 MAEIVANLNLYIVIIGVILFISVYASKISEKIGIPLLLVFLGIGMLLGSEGIGGIEFDNA LLTQAIGTIALIFILYSGGLDTFWEEVKPVAINGILLATFGVLITALVMACFIYLILDFT FLESMLLGSIVSSTDAAAVFMILRSQKIRLKNNIRPLLELESGSNDPMAIFLTIIVLQIL TMPQANVVSEWFFYFVIQFAIGGVLGLVCGYLFPKICQFINISQAGLYPLISVAWLFMIF GLSSLLGGNGFLSIYIAGIMTNKFAFPNKAHIIAFHDVIAWMMQIVVFLVLGLLVFPSEL PEVAIQALILSLVLIFIARPMSVFISLMKSKYSTKEKAYISWVGLRGAVPIILATYPYAY KLENSHMIFNVVFFMVLVSVLLQGITIGFMAKRLGIIEE >gi|197325098|gb|DS990368.1| GENE 230 244619 - 245260 813 213 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417866|ref|ZP_03655872.1| ## NR: gi|224417866|ref|ZP_03655872.1| possible outer membrane protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0553 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0553 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 213 10 222 222 402 100.0 1e-111 MVEFLVSYEVYQGIAPQSTYHPLYETRKNRLLGVYGTYNKVESDANLGITGFDSQKHDLN EKPFGFGIKAGYLLSPNHRILLGFENTLKKNGFSYRTLTFGYSFTPRIPNTQSWRLLLGV EAGLAFGKFDSGSFVINDSAMGKLDYTGLTYGVRAGAIYEMQFGELEFGIQSKRLDFGEE SSSVLINDTPTGASLDLSDTSSTGIYFGYNFLF >gi|197325098|gb|DS990368.1| GENE 231 245270 - 246043 378 257 aa, chain + ## HITS:1 COG:no KEGG:WS0258 NR:ns ## KEGG: WS0258 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 16 253 9 244 251 209 47.0 1e-52 MIKIPKNPSKKFVYHLLEEQYEAFNHYHSITTDLPDPLGVARQFMSDKVALFCALFAYGN ARAIVRFLESCNLYFLDQASYKSHHNLHLNEIPYCTNKPYRFQNQDEIQDFFESLLMSGD LYEIFYRAYKKDSLLKGIEALQNYLYSNLKKTTKSLEFLIGKSQSNSPLKRWNMFLRWMV RKDCVDLGLWEGIKRSDLILPLDTHTFRVSQRLGILKRKSYDLKAALEVSEFLKKLDLND PIKYDFALYRIGQLGLI >gi|197325098|gb|DS990368.1| GENE 232 246040 - 247869 2208 609 aa, chain - ## HITS:1 COG:jhp1047 KEGG:ns NR:ns ## COG: jhp1047 COG1256 # Protein_GI_number: 15612112 # Func_class: N Cell motility # Function: Flagellar hook-associated protein # Organism: Helicobacter pylori J99 # 1 608 1 605 606 518 47.0 1e-146 MGGLLSSLNTPYTGLTGHQVMVDTVSNNIANANNEFYSRQVVRSSAQTPLQTSSNYVIGQ GLNIISVERVHDEYTFSRYKKASMEKTYYEKSFEGLKEASSYYPEVDGVGIYNDLQNYFN AWKDLSTKSGDSAQKIALAEQASTLANNISSTRDRLVNLQQSLNNELKVAVDEVNRLGEQ IAQLNKKIAEYEYQELNQKANDLRDLRDQYEFEINNLIGCDVFKQGVKGSACVDENIADF DDGYTLTIGGKAIVDGTSFHPLTLDNSQNPSGIYTIKYLRSDHKEYNLTNAINEGKVGAI LDLIRTEDVLDCNGTLGKLQVYINDLDTFANGLIEATNNIYAQSSQLSAKSDTLNINSQD ALVTSDYNINSGSFKVVMYNKQGQEIGSRSVNIDNLTSMQDVLDQLNANIDDNGNMNASD DFDDRFVATFNNDSKTFTITSKNPSEEIYISIQDDGTNFAGALGINRFFAGNSADNIELA EPYKSDATLIRAYREPVDGNFEVANLMQQLQYDKITFTSQDGTQQEETISGYFRYIAGKV SSQTESTQITLETKEAVYISIKQEYKAISEVSVDDELINLIKYQSGYSANAKMVSTIDEM LNTLLGIKG >gi|197325098|gb|DS990368.1| GENE 233 247880 - 248335 670 151 aa, chain - ## HITS:1 COG:no KEGG:WS0260 NR:ns ## KEGG: WS0260 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 150 1 141 142 94 44.0 1e-18 MSLQFLKDALEDIKALIAITEQDISDIKEAKNEPIFARIAQKEELTNSFIRKKEAYAKSI ESKLKKDYPNATLADLTYEEKQKLLGEGASEFTAQLHDKLEELKKLNYRFGKMSLAVSEF YNSLLRNIVPVEQQGYNKSTLSNSSFLKTEV >gi|197325098|gb|DS990368.1| GENE 234 248365 - 248604 346 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224417870|ref|ZP_03655876.1| ## NR: gi|224417870|ref|ZP_03655876.1| hypothetical protein HcanM9_01203 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0557 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0557 [Helicobacter canadensis MIT 98-5491] # 1 79 1 79 79 82 100.0 1e-14 MISQLMSNSAFSSAINQANNKNTSQINHAKNEQIEDKQKVSSQKTSSSRVEEIKNAIKNG SYQIDLKGSAEKLAQELLR >gi|197325098|gb|DS990368.1| GENE 235 248664 - 248858 359 64 aa, chain - ## HITS:1 COG:no KEGG:WS0262 NR:ns ## KEGG: WS0262 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 2 62 4 65 65 66 50.0 4e-10 MKDWFIPSIGFGLFIYFMLFVILYTIKIGGANVPLYDMDNYIAPPKTETEKFLQDISKNI RKKL >gi|197325098|gb|DS990368.1| GENE 236 249004 - 250233 1326 409 aa, chain + ## HITS:1 COG:Cj1215 KEGG:ns NR:ns ## COG: Cj1215 COG0739 # Protein_GI_number: 15792539 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Campylobacter jejuni # 10 394 3 386 386 312 41.0 7e-85 MQQIQILVFRFLCVFGCLLSSLVAANIQESQWENGQTLLTFFEKNSIPLKVYYDLPREDK ELADEIVSGNTFYTLYDEEGKLLQALIPINENSQLHIYKQDSTYGMRAIPIVYLQKEHNI ALSVESLLYNDIVKYTGDTFLASDFIQAYKGSVNFKRQIKRGDKLAIIYERKYRLGKVFG SPNIKASILQTSDEEKYVVRYDGNFYDLQGNNLNKYLFMIPLQYKRISSHFSMGRKHPIL GYKRPHLGTDYAAPRHTPIKAAAQGKVIFAGTKGGYGKTVIIQHENGYRTLYGHMHKINK GIRTGVYVSQGKQIGTVGSTGLSTGPHLHFGLYKNGSAINPQKHLRIATIKLKGKEKEEF SILAKSFQDKLGVILANNLENEPFKKMQNSYIVYLSEEIGNNEDTKRNN >gi|197325098|gb|DS990368.1| GENE 237 250208 - 250822 650 204 aa, chain + ## HITS:1 COG:HP0507 KEGG:ns NR:ns ## COG: HP0507 COG0494 # Protein_GI_number: 15645134 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Helicobacter pylori 26695 # 15 199 24 208 212 186 49.0 3e-47 MKTPKEITNIRFCACESSLYIKPKRMLFCENGKERSWDIIEAHDSVAALLYHKQKDSFVV VKQFRPAVFLKEQARENKKLKCEIGYTYELCAGITDKPNKTLKEIMQEEILEECGYRIPL EKIEKITEFYSSVGFAGSKQTLFFAQIDEEFRVHKGGGIDDENIEVIFIPRKEAYSFILD ETYPKTSGVMFAFLWFFKEKINEM >gi|197325098|gb|DS990368.1| GENE 238 250812 - 251429 631 205 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417874|ref|ZP_03655880.1| ## NR: gi|224417874|ref|ZP_03655880.1| hypothetical protein HcanM9_01223 [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 205 1 205 205 294 100.0 2e-78 MKCDFALQEITKKLDEIKEVWQIYEIFEKAKKDFNEEYESLSKDRDSLIQSFNETSAKNA LLLSQNQELETQNKVLEQTLAKKQKALEELDSKVALEGIYFDFSNLESLCEDLKAHLEKI DTALPAKPNALQKLEVSYQQHQKLVAKPANSYVTLAQAQELYERIEVFLKHFKSLDLEIA KILLEVRDLKNQCQEKYEDSSKESL >gi|197325098|gb|DS990368.1| GENE 239 251451 - 252578 666 375 aa, chain + ## HITS:1 COG:jhp0801 KEGG:ns NR:ns ## COG: jhp0801 COG0763 # Protein_GI_number: 15611868 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipid A disaccharide synthetase # Organism: Helicobacter pylori J99 # 6 373 4 359 360 277 44.0 3e-74 MKKIKIFVSALEYSANIHLFYLLNALQKKQLEFEICGIFDSEILKRDSSFSPNEFRVMGF VEVLRLIPKFFKIKKALIALAKECDFALFMDSSSFNIPLLKSLHQAKNKPYLAYYILPQV WAWKPYRAKIFSVYCDALWGILPFEGFYYPKTSNFSYVGHPLLDEIPFSYTKANSTNFIA FMPGSRISEIKALFPVFKELVKHFKTMNKKALLIIPRHFKNRDLSKIYGDLRDFEISFET YEGLKQCEFAFVCSGTATLESTLLGIPTILVYKARWLDYWIAKRLVKLNYIGLANIFLEF LAYGSPKNNHNPQNFPIHAEFLQDQVKVETLLKAFYKFDNEKFFAQKEKLIQYLKNGSAE NCARKIENFVKNLQN >gi|197325098|gb|DS990368.1| GENE 240 252650 - 253120 628 156 aa, chain + ## HITS:1 COG:HP0866 KEGG:ns NR:ns ## COG: HP0866 COG0782 # Protein_GI_number: 15645485 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Helicobacter pylori 26695 # 1 156 6 161 164 199 64.0 1e-51 MTEYGYNKLINELKNLKEVERPNNIKEIDTAREHGDLKENAEYHAARERQLFLDARINEL TQLVAEARVIDPSTITHDKVSFGSTITLEDLDSEEQFCYTIVGATESNPDKGLISYHSPL AKQLLGKVVGDEVTIQLPKGKVDYEILEICYKEIQF >gi|197325098|gb|DS990368.1| GENE 241 253131 - 253565 549 144 aa, chain + ## HITS:1 COG:jhp0799 KEGG:ns NR:ns ## COG: jhp0799 COG0756 # Protein_GI_number: 15611866 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Helicobacter pylori J99 # 4 144 3 143 145 158 55.0 3e-39 MAVLKIKKLLPEAILPKYQTQGSAGFDLCAVQSATIPAGKWALIPTGLAFSFKEGYEIQV RPRSGLALQYGITLLNTPGTIDSDYRGEIKVIMMNLGEEDFVINKGDRIAQAVLCKIKQA KIEEVEVLDETKRGKGGFGSTGKS >gi|197325098|gb|DS990368.1| GENE 242 253581 - 254126 534 181 aa, chain + ## HITS:1 COG:no KEGG:WS0801 NR:ns ## KEGG: WS0801 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 181 1 189 202 108 41.0 1e-22 MSLKQNVDYIKEEINNDEKMLEGLIRFEGWFKRYKIPLVIIVAFLVILGVGYNINQYYQE QLKEKNASLYQKALLGDEVAIADLKDSKSLLYDLYLYQKALKENNATILKELESSKDPMI AKLSKQQNMSLNQDLKELNSKDSNEVGYLEAAFLEIKKGNTKEAKAILAKIPSDSAIKEI A >gi|197325098|gb|DS990368.1| GENE 243 254289 - 255302 1276 337 aa, chain + ## HITS:1 COG:no KEGG:WS0802 NR:ns ## KEGG: WS0802 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 11 336 10 331 333 277 42.0 6e-73 MPNNALKVLVGIVLLAFLSGCGSKYYFEPKEGEIVDDISYGDSLPSDIIGITRDGATLEN GQFITKYSQISKVKLPKNARYLNESEKFYIATTNNKEMLLIDKETLNENIIALEGNPISV TIEGNLAAIIFDNNSFVLYDLNLGRAVYKQENTPAPTNNTLIASPYFLSDIAVIPTLDGK LVIVDKNTHQMIRSIVVNGGEKYFNNVIFLEAINDRMVAATPKRVISVSPSIINTFDANL QDILFFGDQIVLFTTEGEVILTDKDLNEIRRQKFPFAHFSAANHGDRIVVLETQGYMISL SEDLQEWQIFALPNKIKEPTFSATGKIFVGDEILEVK >gi|197325098|gb|DS990368.1| GENE 244 255304 - 255942 671 212 aa, chain + ## HITS:1 COG:Cj0394c KEGG:ns NR:ns ## COG: Cj0394c COG1521 # Protein_GI_number: 15791761 # Func_class: K Transcription # Function: Putative transcriptional regulator, homolog of Bvg accessory factor # Organism: Campylobacter jejuni # 1 201 1 201 209 182 49.0 5e-46 MILCDIGNTFLHFYYRGRVWKEKRNNLSQKDSSEVVIYISVNQESTRSLLLSHPYCFDLT PYMNLDTNYKGLGIDRIAACNAISDGVIIDAGSAITLDIMHDGLHLGGCILPGIAQIQKG FKSISVLDCGINLSVPLDTLPQNTKDAVSYGILKPIILLIENFSKNKKIYFTGGDGKFLS RFFENAIYDDLLIFKGMQNIITAKITSKGIYL >gi|197325098|gb|DS990368.1| GENE 245 255939 - 256556 710 205 aa, chain + ## HITS:1 COG:aq_1613 KEGG:ns NR:ns ## COG: aq_1613 COG0040 # Protein_GI_number: 15606728 # Func_class: E Amino acid transport and metabolism # Function: ATP phosphoribosyltransferase # Organism: Aquifex aeolicus # 1 193 1 195 214 157 43.0 1e-38 MIKIALPKGRIAQEALKIFEGYLQSPLDFEDRKLILKKQDFEFMLVRSQDVPVYVERGAA DIGIVGLDVLEEKQSRLVRLLDLEFGKCRVAIGSPKNVILDFSKPNLKIATKMENITKAY FSKKAISVDIIKLYGSIELAPLVGMADAIVDLVETGNTLEQNNLKIDAVIMEVSAYLVAN SNSFYVQKKEILEIQKYFKNFIKKD >gi|197325098|gb|DS990368.1| GENE 246 256559 - 257824 1769 421 aa, chain + ## HITS:1 COG:aq_940 KEGG:ns NR:ns ## COG: aq_940 COG0065 # Protein_GI_number: 15606262 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase large subunit # Organism: Aquifex aeolicus # 1 421 1 422 432 472 54.0 1e-133 MGQTITEKIFSEHVGKEVYAGEIVDCPIDMVIGNDITTPLSIKAFEQSGAESLANPDGFC IVMDHFIPAKDIASANQAKISRDFAKKHNLKHFFDEKDMGIEHALLPEKGLVVSGDVIIG ADSHTCTHGALGAFSTGMGSTDLAYAMITGKNWFKIPSAIKVEFIGKPAKHIYGKDLILE VIRQIGVDGALYQTLEFCGDGIQYLSMDDRFSLCNMAIEAGAKNGIIASDEITREFLASR KELRAKPKEFYSDKDANYTRVLKIDISTLEPVIAYPFLPSNGKSISQALKDDLKIDQVFI GSCTNGRLADLKIASEILKGKKVHKDVRLIVTPGTQQIYKEAYQLGYIDILLESGALISN PTCGACLGGYMGILGDNERCVSTTNRNFVGRMGARSSEVYLANSAVAAMSAIKGQIADPR E >gi|197325098|gb|DS990368.1| GENE 247 257857 - 258915 1050 352 aa, chain - ## HITS:1 COG:Cj1533c KEGG:ns NR:ns ## COG: Cj1533c COG1373 # Protein_GI_number: 15792841 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Campylobacter jejuni # 2 348 3 342 345 87 26.0 3e-17 MLLETLFENYPKNFSKIHRKLTLNLKPHHLIYGSKNIGKTDFILQYYQQESFKNLKKLYI NLSDCRINSYQDLNNLEAFCHKEKIEILILDSYIPQFPIPNLPYITLISQFPYEIPHFQI QEIPPITFKEYLQIHKQTPYDSFNYYLKYGNLFEAETLNEYKKGELLKSLANDKTNFWIL KNFIQNLGLKVSLHQIYTKLKKEGKISKDRFYEYANTLKESKTLFWVEKFEHDLAPKKLY FYDFTLKNAVSYERNFSALFENMVFLELLYNFKEVVFFTDKLDFYLPNSTLGILCLPFIQ SQILEQKLNKIIREREYCEKFLIITLNQKAQGENLGTPYMILPFSEFATFSL >gi|197325098|gb|DS990368.1| GENE 248 259089 - 259400 516 103 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417884|ref|ZP_03655890.1| 30S ribosomal protein S10 [Helicobacter canadensis MIT 98-5491] # 1 103 1 103 103 203 100 2e-50 MEKIRLKLKAYDHRVLDRSVVSIVEAVKRTGAEIRGPIPLPTKKRRYTVLKSPHINKDSR EQFEIRVHCRVIDIVSATPETVDSLTKLDMAPEVDVEVRLMDK >gi|197325098|gb|DS990368.1| GENE 249 259410 - 259988 995 192 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417885|ref|ZP_03655891.1| 50S ribosomal protein L3 [Helicobacter canadensis MIT 98-5491] # 1 192 1 192 192 387 100 1e-106 MEFLVEKIGMSRTVAKPSIPVTLLKVKTAKVCEVLDGGKALVAYHQGKTLNKAIAGQQKK YNLDKEFNKFATIEVGNAEVGDLDLAILESAKRAKVSFNTKGRGFSGVMKRWNFQGGPGA HGSRFHRAPGSIGNREWPGRVQPGKKMAGHYGNEKVTVQNEIISFDKENNVLVLKGSVPG FNGAFGKLKVVK >gi|197325098|gb|DS990368.1| GENE 250 259985 - 260599 1033 204 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417886|ref|ZP_03655892.1| 50S ribosomal protein L4 [Helicobacter canadensis MIT 98-5491] # 1 204 1 204 204 402 100 1e-110 MSKAIILDNGLKKSGELQLPESYKAINSHNLYLYIKSFLASMRANNAMAKTRGRVSGGGK KPWIQKGGGRARAGSITSPVFVGGGVSHGPSNNRNYNLKVNKKQKKLALQYALQEKADNG SLFVVDKIQIPSGKTKDANAMFKTLNQRNVLLVSEMFDEKTYLAFRNLKNCYLIDGAELN AYLAATFRSVVIEKALFEAITKEG >gi|197325098|gb|DS990368.1| GENE 251 260602 - 260883 454 93 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417887|ref|ZP_03655893.1| 50S ribosomal protein L23 [Helicobacter canadensis MIT 98-5491] # 1 93 1 93 93 179 100 2e-43 MASITDIKAIMYTEKSLQLQEQNVLVVQTSPKLSKTQLKEVFKEYFGVTPLAINSLRQEG KVKRFRGVIGKRSDFKKFFVKLPEGAKIESLAV >gi|197325098|gb|DS990368.1| GENE 252 260894 - 261721 1433 275 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417888|ref|ZP_03655894.1| 50S ribosomal protein L2 [Helicobacter canadensis MIT 98-5491] # 1 275 1 275 275 556 100 1e-157 MAIKTYKPYTPSRRFMSNLSSENITAKASVRKLLVKLPVHAGRNNNGRITSRHKEGGAKK LYRIIDFKRNKFNIEGKVSTIEYDPYRNCRIALVTYKDGDKRYIIQPSGLKVGDTIISAE GGLDIRLGYAMKLKNIPIGTVVHNIEMYPGRGGQLARSAGASAQLMGREGKYSIVRMPSG EMRYILGECMATIGVVGNEDFANINIGKAGRSRHLGIRPQTRGSAMNPVDHPHGGGEGKT GSSGHPVSPWGMPAKGYKTRRKKASDKLIISRRKK >gi|197325098|gb|DS990368.1| GENE 253 261731 - 262012 491 93 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417889|ref|ZP_03655895.1| 30S ribosomal protein S19 [Helicobacter canadensis MIT 98-5491] # 1 93 1 93 93 193 100 1e-47 MARSIKKGPFVDEHLMKKVLKAKEAKDNKPIKTWSRRSTIIPEMIGFTFNVHNGRAFVPV YVTENHVGYKLGEFAPTRTFKGHKGSVQKKIGK >gi|197325098|gb|DS990368.1| GENE 254 262023 - 262352 532 109 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417890|ref|ZP_03655896.1| 50S ribosomal protein L22 [Helicobacter canadensis MIT 98-5491] # 1 109 1 109 109 209 100 2e-52 MSKALLRYIRLSPTKARLIAREVQGMNAELAIASLEFMPNKAAKIISKVIASAVANGGYE AENVVVSSCRVDAGPVLRRFTPRARGRATPVRKPTSHIFVEVAQKSKDK >gi|197325098|gb|DS990368.1| GENE 255 262352 - 263059 1188 235 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417891|ref|ZP_03655897.1| 30S ribosomal protein S3 [Helicobacter canadensis MIT 98-5491] # 1 235 1 235 235 462 100 1e-128 MGQKVNPIGLRLGINRNWESRWFPSFATAPQNVAEDYKIRKFLKKELYYAGVSDILIERT ARKVRVTVVAARPGIIIGKKGADVEKLKESLNKIVNKDIFLNIKEVKKPQSNAQLAAESV ATQLERRVAFRRAMKKVMQGAMKSGAKGIKVKVSGRLAGAEMARTEWYMEGRIPLHTLRA KIDYGFAEALTTYGNIGVKVWIFKGEVLQKGIQAEKPQEEGEAKATRPTRKRRGQ >gi|197325098|gb|DS990368.1| GENE 256 263062 - 263487 720 141 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417892|ref|ZP_03655898.1| 50S ribosomal protein L16 [Helicobacter canadensis MIT 98-5491] # 1 141 1 141 141 281 100 3e-74 MLMPKKTKYRKQMKGRNRGKAFRGTSLAFGEFGIKAIEHGRIDSRQIEAARIAMTRATKR TGMVWIRVFPDKPLTAKPLETRMGKGKGAVDKWVMNIKPGRIIYEMGSVDETLARSALAL AQSKLPFKTKIVTREGENEIY >gi|197325098|gb|DS990368.1| GENE 257 263474 - 263668 308 64 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417893|ref|ZP_03655899.1| 50S ribosomal protein L29 [Helicobacter canadensis MIT 98-5491] # 1 64 1 64 64 123 100 2e-26 MKYTEINEKSIQELQELLKEKETSLFELNLKLRTMQQTNTSELKATRKDIARIKTAMNAK RRAE >gi|197325098|gb|DS990368.1| GENE 258 263668 - 263934 440 88 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417894|ref|ZP_03655900.1| 30S ribosomal protein S17 [Helicobacter canadensis MIT 98-5491] # 1 88 1 88 88 174 100 1e-41 MSSVQPHKRIISGKVVTKAGDKSATILVERRVIHPKYRKIVKRFKRYIVHDENNSVKVGD VIEAIECKPISKRKAFTLHKVVSVGVEL >gi|197325098|gb|DS990368.1| GENE 259 263931 - 264299 601 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417895|ref|ZP_03655901.1| 50S ribosomal protein L14 [Helicobacter canadensis MIT 98-5491] # 1 122 1 122 122 236 100 2e-60 MIQSFTRLNVADNSGAKEIMCIKVLGGSKRRYATVGDVIVASVKKALPSGKVKKGQVVKA VVVRTKKEIHREDGALIRFDDNAAVILDSKREPIGTRIFGPVGREIRYANFMKIVSLAPE VL >gi|197325098|gb|DS990368.1| GENE 260 264299 - 264529 385 76 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417896|ref|ZP_03655902.1| 50S ribosomal protein L24 [Helicobacter canadensis MIT 98-5491] # 1 76 1 76 76 152 100 2e-35 MAKFKIKKGDMVEIITGDDKGKKAKILRVIPKSSQVVVEGCKLAKKAVKPTDKNPKGGFI EKEMPIHISNVKKAED >gi|197325098|gb|DS990368.1| GENE 261 264533 - 265087 928 184 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417897|ref|ZP_03655903.1| 50S ribosomal protein L5 [Helicobacter canadensis MIT 98-5491] # 1 184 1 184 184 362 100 3e-98 MYQLKTAYKNEIKSKLAEELGIKNPMLLPKLEKIVISVGAGMHAKDTKIMQNIADTISLI AGQKAVITSAKKSVAGFKMREGMPMGAKVTLRGNQMYNFLEKLIVIALPRVKDFRGIPRN GFDGRGNYSFGVNEQLIFPEVVYDDIMVSHGMNITFVTSAKNDKDALKLLELFGLPFAKG RING >gi|197325098|gb|DS990368.1| GENE 262 265080 - 265265 331 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417898|ref|ZP_03655904.1| 30S ribosomal protein S14 [Helicobacter canadensis MIT 98-5491] # 1 61 1 61 61 132 100 4e-29 MAKKSMIAKANRKPKFKVRAYTRCSICGRPHSVYRDFGICRVCLRKMGNEGLIPGLRKAS W >gi|197325098|gb|DS990368.1| GENE 263 265275 - 265670 659 131 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417899|ref|ZP_03655905.1| 30S ribosomal protein S8 [Helicobacter canadensis MIT 98-5491] # 1 131 1 131 131 258 100 4e-67 MVNDIIADSLTRIRNASMRRLDTTTLYYAKIVVSILEVFQAKGFIEGYKVIEKDKKQSIN VVLKYDEKGHSVINEITRISKPGRRVYKARNELKRFKNGYGTIVVSTSKGVIANDDAYKS NVGGEALCSIW >gi|197325098|gb|DS990368.1| GENE 264 265680 - 266216 897 178 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417900|ref|ZP_03655906.1| 50S ribosomal protein L6 [Helicobacter canadensis MIT 98-5491] # 1 178 1 178 178 350 100 1e-94 MSRVGKKPISIPSSVQVSIEGSKIVFKGGKITKELETYGRVGIEFKDNELSFSLAGSDAQ SRAYWGTYRALANNIVVGLTEGFTKQLEINGVGYKAAVKGKVLELALGFSHPINYDIPEG IEISVDKNLVIIKGADKQQVGQIAAEIREFRPPEPYKGKGVKYVDERIIRKAGKTSKK >gi|197325098|gb|DS990368.1| GENE 265 266227 - 266583 582 118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417901|ref|ZP_03655907.1| 50S ribosomal protein L18 [Helicobacter canadensis MIT 98-5491] # 1 118 1 118 118 228 100 3e-58 MTDKIIRKKRSLRIKRKLRIRARIFGDSTTPRLSIFRSNRYFYAQVIDDVKGVTLASVDG KKMGLKNNKEDVKKIASNLAESLKKANISQVIFDRNGYLYHGVVASFADSLRENGISL >gi|197325098|gb|DS990368.1| GENE 266 266592 - 267032 721 146 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417902|ref|ZP_03655908.1| 30S ribosomal protein S5 [Helicobacter canadensis MIT 98-5491] # 1 146 1 146 146 282 100 3e-74 MEINREDFKEVVVNIGRVTKVVKGGRRFRFNALVVVGNKEGLVGFGLGKAKEVPDAVKKA IDDAFKNIVKVNIKGTTIAHDVQQKYNSSIILLKPASEGTGVIAGGSVRPVLEMAGIKDI LTKSLGSNNPYNVVRATIDALSKVKA >gi|197325098|gb|DS990368.1| GENE 267 267042 - 267443 661 133 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417903|ref|ZP_03655909.1| 50S ribosomal protein L15 [Helicobacter canadensis MIT 98-5491] # 1 133 1 133 133 259 100 2e-67 MALENLAPAKGSVKKIKRVGRGQGSGMGKTSTRGGKGQTARTGSKQKRGFEGGQQPLQRR LPKVGFTSRVIKPYVINVELIKAIATLEEITFESIKSIHKFPTYTTKIKLIGASARNLAA KIKDERITTSGQK >gi|197325098|gb|DS990368.1| GENE 268 267443 - 268702 920 419 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 8 414 26 436 447 358 44 2e-97 MSKTIVNKILITLGFLLAYRVLAYVPVPGVDTSVIKTFFDNNASNALGLFNMFSGNAVER LSIISLGIMPYITASIIMELLAATFPNLGKMKKERDGMQKYMQIIRYTTVVITLIQAIGV SIGLKSLGTGANGAIMIDMNVFIAISAFSMLCGTMLLMWIGEQITQRGIGNGISLIIFSG IVSGIPSAIAGTFNLVNTNQISWLVLLFIMAIIIITVGCIIFVELGERRIPISYSRKVVM QNQDKRIMNYIPIKMNLSGVIPPIFASAILMFPSTILQSSSNTIIMQIADYLNPNGYLYN VLMFLFVIFFAYFYASIVFNPKDISENLKRQGGFIPGIRPGEGTANFLTEVANRLTLWGA LYLALIATLPWVLVKASGVPFYFGGTAVLIVVQVAVDTMRKIEAQIYMNKYKTLSAVGL >gi|197325098|gb|DS990368.1| GENE 269 268703 - 269461 888 252 aa, chain + ## HITS:1 COG:HP1299 KEGG:ns NR:ns ## COG: HP1299 COG0024 # Protein_GI_number: 15645912 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Helicobacter pylori 26695 # 1 251 1 252 253 349 64.0 2e-96 MSIAIRKPSEIESLRKANKIVAKTLNYLKANVKPGITLKELDTMGEDFIRSNGGIPAFKG LYGFSGSVCISVNEVIIHGIPTDYALKEGDIVGLDLGVNLDGWYGDSAITCGVGNISQEN QRLIACAKDALYFAIDQIKVGMHFKELSHLIEQFILDYGYVPLRGFCGHGIGKKPHEEPE IPNYLEGNNPKQGYKIKEGMVFCIEPMICQKSGEPKILKDDWSVVSTDGLNGSHYEHTIA IIKGKAEILSKE >gi|197325098|gb|DS990368.1| GENE 270 269471 - 269689 242 72 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 72 1 72 72 97 59 9e-19 MAKDDVIEIDGIVKEALPNATFRVELENGHVILCHIAGRMRMNYIKILQGDKVKIELTPY SLDKGRITFRYK >gi|197325098|gb|DS990368.1| GENE 271 269926 - 270039 199 37 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417907|ref|ZP_03655913.1| 50S ribosomal protein L36 [Helicobacter canadensis MIT 98-5491] # 1 37 1 37 37 81 100 9e-14 MKVRPSVKKMCDKCKVIKRKGVIRVICENPKHKQRQG >gi|197325098|gb|DS990368.1| GENE 272 270052 - 270420 613 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417908|ref|ZP_03655914.1| 30S ribosomal protein S13 [Helicobacter canadensis MIT 98-5491] # 1 122 1 122 122 240 100 9e-62 MARIAGVDLPKKKRIEYALTYIYGIGLKASRDILNAVNISYDKRVQDLGEDEVSAIAKEI QAHHIVEGDLRKKVTMDIKALMDLGNYRGLRHRKGLPVRGQTTKNNARTRKGKRKTVGSA SK >gi|197325098|gb|DS990368.1| GENE 273 270431 - 270823 670 130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417909|ref|ZP_03655915.1| 30S ribosomal protein S11 [Helicobacter canadensis MIT 98-5491] # 1 130 1 130 130 262 100 2e-68 MAKRNVTKKRVVKKNIARGIIHISAAFNNTSVTITDEMGNVICWSTAGALGFKGSKKSTP YAAQQAVEDAVSKAKEHGIKELGVKIQGPGSGRETAVKSLGSIEGIKVLWFKDVTPLPHN GCRPPKRRRV >gi|197325098|gb|DS990368.1| GENE 274 270833 - 271459 1054 208 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417910|ref|ZP_03655916.1| 30S ribosomal protein S4 [Helicobacter canadensis MIT 98-5491] # 1 208 1 208 208 410 100 1e-113 MARYRGPVEKIERRFGVSLALKGERRLAGKSALDKRPYGPGQHGQRRGKISEYGIQLREK QKARLMYGVSEKQFRSIFVEANRLEGNTGENLIKLIERRLDNVVYRMGFATTRRFARQLV VHGHILVDGKRLNIPSAFVSAGQKIEICEKTKKNPQIQRAIELTKQTGIVPWVDVDQEKV FGIFTRLPEREEVVIPIEERLIVELYSK >gi|197325098|gb|DS990368.1| GENE 275 271477 - 272466 1310 329 aa, chain + ## HITS:1 COG:jhp1213 KEGG:ns NR:ns ## COG: jhp1213 COG0202 # Protein_GI_number: 15612278 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Helicobacter pylori J99 # 1 327 1 334 344 362 56.0 1e-100 MKSIKTSPHIPTKIEVKEVGVNKVQITAYPFENGYAITLAHPLRRLLLGSSVGFAPVALH IAGVAHEFDSVRGVTEDVSQFIVNLKTIRFKIKDDSDSVSVDYTFNGPKVITGADLSNDL VEVVTPDVHLATINKDATLSFSIVIYKGIGYVPSEEIRANVPEGFMPLDAYFTPVTSATY ATENMLLEDDPNYEKVIFEIQTDGQVDPLTAFKNALSVMHKQMSIFNSELNIEIPEVAIS EEERPELKVLSQTIDSLNFSARCFNCLDRSGIKYLGELVLLNEEQIKNIKNLGKKSLDEI TAKLDELGYPVNREISEDLMQILKKKFSN >gi|197325098|gb|DS990368.1| GENE 276 272484 - 272834 583 116 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417912|ref|ZP_03655918.1| 50S ribosomal protein L17 [Helicobacter canadensis MIT 98-5491] # 1 116 1 116 116 229 100 3e-58 MRHKHGYRKLGRTSSHRKALLKNLSIALIASGKIETTLPKAKELQSYFEKLLTKARTNDS MAHRLVFSHLQHKESVKKLVKEIAPKYVGKNGGYTRIIKTRVRTGDAAPMAFIELV >gi|197325098|gb|DS990368.1| GENE 277 273018 - 273521 808 167 aa, chain + ## HITS:1 COG:Cj1186c KEGG:ns NR:ns ## COG: Cj1186c COG0723 # Protein_GI_number: 15792510 # Func_class: C Energy production and conversion # Function: Rieske Fe-S protein # Organism: Campylobacter jejuni # 1 167 1 167 167 202 60.0 3e-52 MAENVNRRDFLGMTLGAIAVVGAGASLVAMKSSWDPLPSVVSAGFTTIDLSTMQEGEYRQ VEYRGTPVYVIKKTAEMKKCEERDVVVGNADYSLGIQICTHLGCIPSYDSATTEFHCACH GGRFDACGRNIFGPPPTPMAIPPFKIDGQKLVLGEEGPEYLKLVGKA >gi|197325098|gb|DS990368.1| GENE 278 273531 - 274760 1345 409 aa, chain + ## HITS:1 COG:HP1539 KEGG:ns NR:ns ## COG: HP1539 COG1290 # Protein_GI_number: 15646146 # Func_class: C Energy production and conversion # Function: Cytochrome b subunit of the bc complex # Organism: Helicobacter pylori 26695 # 1 407 1 407 412 593 75.0 1e-169 MAQIEKANGIVDWLDKRLAIKPLMKVLMTEYWIPKNINFLWAMGIVLVVLFTLLVISGLF LLMYYKPDTKLAFDSVNYTIMQEVKYGWLWRHLHAVSASVCFLIIYIHMFVAIYYGSYKR GREMIWITGMVLFGLFSAEAFSGYMLPWGQMSYWAAAVITNLFGGIPVIGPDLVVWIRGN FIVADATLTRFFMLHVVLLPVVIMIVIAIHFYALRIPHVNNAYGEEIDFEKEAEKFKAGN KKESKVIPFWPMFLSKDFFVASFFLAILFYLTCYHYSFALDPINFDPADHLKTPPHIYPE WYFLWSYEILRGFFFSADLGLIAFGIANVIFMLLPWLDRSNVVAPAHKRPAFMVWFWLLV IDMIILTIYGKLPPTGINAYIGFAVTIAFFALLFVVLPIITKLENKKNS >gi|197325098|gb|DS990368.1| GENE 279 274770 - 275612 1051 280 aa, chain + ## HITS:1 COG:jhp1461 KEGG:ns NR:ns ## COG: jhp1461 COG2857 # Protein_GI_number: 15612526 # Func_class: C Energy production and conversion # Function: Cytochrome c1 # Organism: Helicobacter pylori J99 # 1 280 1 285 285 281 48.0 1e-75 MKEFLALIVVVIVTGVIYWGVEPFAHGQMYPKVAPADYTFSDLKPLEAQEGNAANGKEIV VANCVACHSIKAEGMEMPFSPEDALAAYGVVPPDLSSAGLIYDKNFLGNAIKNIATATKQ THKFSGNHPMPAYDWMSDQEIADVVAYLQSIAPKEMTNKEVFIDACGRCHDMKYDKWSAN GGLKTYLETKVPDLSMMIRSRNLEYLHTFVNDPQKRLAGTAMPRVGLTEQAENQVIAYME SVGDSKKAERESLGWKLVVFMVFMGIVAYLWKRKIWRDAH >gi|197325098|gb|DS990368.1| GENE 280 275636 - 277948 2105 770 aa, chain - ## HITS:1 COG:aq_672 KEGG:ns NR:ns ## COG: aq_672 COG0068 # Protein_GI_number: 15606085 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Aquifex aeolicus # 7 761 8 741 746 528 39.0 1e-149 MEKTYILNLTGIVQGVGFRPFVYKIATQNHLKGYVLNNNQGVEILVQGNEKKLEKFFNDL KNPPKAAKIISISKKLIQTKKTFSTFLIQESQAHSIKTATIPADIALCESCKQEFLDPKN HRFLYPFISCTDCGGRYSLISVLPYDRKNTAMHSFVMCESCQKEYNDKTSRRFHSEINCC PTCGPQLFFTDELNYQGNFLPDSQIHSHLAKQDSPIKSALKALKEGKILALKGIGGYALI CDATNANSIKALRERKNRPKKPFALMCKNIQMAKNYAYLNSQAIAMLNSSISPIVLSYSK TKANLPLSLIAPNLSTLGIILPYSGLHHLLFHSIDFPLVFTSANISGEPIIKDCYSVIQK LQNVCDGILSYNRDILNPIDDSLVRILGKKTQVLRRARGYLSDIPLQTPHHTKDFIALGA QQKSTFCLNLHNKLFLSPHLGDLDNLESINNFKQNLSLFSQQYQAKIHTFCGDLHPNYTQ REFLNGSDSHFIQHHFAHLLSNVAENKIKQEVLGVIFDGTGYGLDGNIWGGEFLFYDHKK PLNFKRKAFFAPFKLLGGEMAIKDTRRLGIEALFIAFGNDYKNLNLPLLNSLKKDYGENI INFFYKQHQNAQSYTCNSVGRIFDMVASLCNLIEKTSYEGEGGMVLESLAYKALKHKKQA KIYPFRISKNIIFWESIIQEIYQDLQNHIPLENIALNFHQTLANIISIIAQKYSTILLSG GCFQNAILTKLTLKALKGKKVFLNGEIPCNDGGISFGQTYYMRLKTSQKH >gi|197325098|gb|DS990368.1| GENE 281 278035 - 278652 683 205 aa, chain + ## HITS:1 COG:Ta1277 KEGG:ns NR:ns ## COG: Ta1277 COG0352 # Protein_GI_number: 16082276 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Thermoplasma acidophilum # 2 187 8 189 213 104 32.0 1e-22 MLQGIYAISDEILTPYQEIFAMLQKAIEGGISIFQFRDKSHQDNQIESLVAELMDYCEQE QILFVLNDRIELAMKLQTKGLHIGKKQEVHPYSLEELYMIRKSYGGILGISCYGDLQLAQ NAKEIGADYIAFGSCFASPTKTQAKVISLDLFQKIQGIKKCAIGGINQQNIHQLQNVDMV ACISSIWKGDIIKNIDNLKRNWKNL >gi|197325098|gb|DS990368.1| GENE 282 278696 - 278992 361 98 aa, chain + ## HITS:1 COG:CAP0038 KEGG:ns NR:ns ## COG: CAP0038 COG2350 # Protein_GI_number: 15004742 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 4 97 1 94 96 74 36.0 4e-14 MKNLFIILVTYTKELAEIEKILASHREYLKTGYASGNLLASGPQNPRKGGIIVGQFDNKE AAINFTKQDPFYLQNVAKYEILEFEPVLHQDFLKDFLV >gi|197325098|gb|DS990368.1| GENE 283 278989 - 279288 283 99 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224417919|ref|ZP_03655925.1| ## NR: gi|224417919|ref|ZP_03655925.1| hypothetical protein HcanM9_01452 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0606 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0606 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 99 1 99 99 174 100.0 2e-42 MKKFLVVIMLGVGFLLNGCISPKTDAFLVGAGLGAGVTYYFLNGGKIDGISKNSLSNSLQ NSSKQNIADTSIPSELEWYYFDRDLYEQTLLNQKQSPVR >gi|197325098|gb|DS990368.1| GENE 284 279409 - 279852 568 147 aa, chain + ## HITS:1 COG:jhp0365 KEGG:ns NR:ns ## COG: jhp0365 COG1826 # Protein_GI_number: 15611433 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway components # Organism: Helicobacter pylori J99 # 1 115 1 116 160 83 47.0 1e-16 MFGMGFFEILVIAAVAIIFLGPEKLPKALVDVAKFIKAVKKTMDDAKESLDREVNLNKIK EEALAYKNSLTQGVENFTKEMDLKELSSLDFEEEQKPQTSETKESPLAPNVNTLPTSNFK EGIKPSQTKQTLSFKEDVKSEEKVING >gi|197325098|gb|DS990368.1| GENE 285 279879 - 280613 779 244 aa, chain + ## HITS:1 COG:jhp0364 KEGG:ns NR:ns ## COG: jhp0364 COG0805 # Protein_GI_number: 15611432 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway component TatC # Organism: Helicobacter pylori J99 # 1 243 1 236 249 221 50.0 7e-58 MFEDLKPHIQDLRKCLIVITLALLTTFLISFYFWEIILDWMVAPLSAALPKGRESVIFTQ VGEAFFTAIKVAFFSGFIFALPVIFWQIWAFVAPGLYDNEKKLVVPFVIFGTFFFLCGCA FAYYVAFPIGFHYLINFGSQLFTALPSIGDYVGFFAKLMVGFGISFEFPVITFFLAKIGL VTDKTLKDYFKYAIIFIFILAAILTPPDILSQFLMAIPLVFLYGLSIVIAKLVNPYKNEQ DENE >gi|197325098|gb|DS990368.1| GENE 286 280606 - 281646 1306 346 aa, chain + ## HITS:1 COG:Cj0577c KEGG:ns NR:ns ## COG: Cj0577c COG0809 # Protein_GI_number: 15791937 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Campylobacter jejuni # 3 346 4 342 342 339 51.0 4e-93 MNELLLESYDYDLPKELIALNPIMPQENARLLVYDRKDHSITHTTFRDFAKFLPKETLLV FNDTKVIPARIYGKKLQKEALGGGKIEALFHKEIMENLYLMQLKGRLKIGNIVEFVGVFA KILKDCGMGFKEVSFFRDEKCLLPLSRQEFFDFLEQFGHIPLPPYIKREDNQEDRVNYNS VFAKNVGAIAAPTASLHFNQEAFKALQRDFESAFVTLHVGAGTFIGVSTENILEHKMHQE TFVIPKESVEKIKKVSHITAIGTTATRVVEYFARTKQTQGECDLFLHPQNKPIITNALLT NFHLPKTTLLMLVASFVGLEETKRIYKQAIEEKYRFYSYGDGMLVL >gi|197325098|gb|DS990368.1| GENE 287 281643 - 282215 430 190 aa, chain + ## HITS:1 COG:jhp0362 KEGG:ns NR:ns ## COG: jhp0362 COG0357 # Protein_GI_number: 15611430 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Helicobacter pylori J99 # 10 190 2 178 178 111 38.0 7e-25 MSFILTTQANQALETYAKLLLEWNGIHSLSGARDLQSVYKNIQDSLYPLEFLGEVLRNKT KLFDVGSGNGFPAVALGIALGIEVVLCEPNAKKAAFLQNLKSQLGLKNFMILRQRVEEVK LDKKPDLITSRATFSVEDFLKKTKSIIGRESLILLYKGSLVENEIPQGLEYERFQKDFRN YLVIKGEAIC >gi|197325098|gb|DS990368.1| GENE 288 282209 - 282427 288 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417924|ref|ZP_03655930.1| ## NR: gi|224417924|ref|ZP_03655930.1| hypothetical protein HcanM9_01477 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0611 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0611 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 72 1 72 72 108 100.0 1e-22 MLKFLLIILLIVGVYFFVRKIGSKSTQETHSKKTNHEEIMLECKKCGTYISSKEAIISNG EYYCSKECLERS >gi|197325098|gb|DS990368.1| GENE 289 282428 - 282796 437 122 aa, chain + ## HITS:1 COG:no KEGG:Nitsa_1915 NR:ns ## KEGG: Nitsa_1915 # Name: not_defined # Def: hypothetical protein # Organism: N.salsuginis # Pathway: not_defined # 1 119 1 121 128 77 36.0 2e-13 MLILNHKLVNPLKIVCVDSIEAVKKTLPNEFLVINGNLELAKFCYENAVEYASVVKNLTE VLLLVNLGVKFLICENLENAREIQKLAENYLFDSKVLLCISLDYEIEHAAKAGIDGVIFW KI >gi|197325098|gb|DS990368.1| GENE 290 282784 - 283434 596 216 aa, chain + ## HITS:1 COG:no KEGG:WS1181 NR:ns ## KEGG: WS1181 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 25 212 37 225 225 166 48.0 6e-40 MENLGEFEPFCELDLESQEALSKIAILKNYKKKEIIFYEEDEVREIYFLIKGSVKIYKVD RFDNEVFFGISTKGLLNDYDDTKDLVSFMNVECMEDSLVACFDIEGLRVVFDSHPQILKM FFKEALKRIKVFENVVLKELIFDSTAKVAYSLYYDLEEFNTHKKQENAAFLNIQPETLSR ILKKMHRDNVIETNQAGKIEILDQHKLQMIFKQDTR >gi|197325098|gb|DS990368.1| GENE 291 283431 - 284798 1262 455 aa, chain + ## HITS:1 COG:no KEGG:WS1180 NR:ns ## KEGG: WS1180 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 443 1 449 460 344 44.0 4e-93 MTKIVTRLIVIGIITTICVGIMIGSVILINQRSLQDGYLINIAGKQRMLTQKITKEVFMI NSQNKQGFDELNQSIKEFESNLDILQYGSQEKNIHASTNLTIIKQLNSIESQWLVFKKEV EDFQKKALNIYTDRNFLEDNNLAILRLSDHIVQAMVKAKMPQNVIDEAAKQRMLIQRMAY LLIHYTNQWDSISYRELKEVCELYDSVISNFYYNKNYQKYPNIYKAIKANYEFWSVYYQH LQSAMVTQEEMVGNLKNIAVQNTDLLKQINWMVNYYSDISTHSRSYLEKFQYVAAFIMVL LALYSMRNLFNIHIHLKKFVKKTQMLAQGDFKGNLAEAIKLEGESELSLASKNLSKFLNK FHMAKETSNRAKELSDDISREILEISEEIREKLEMAQISQNKRKSIENAINLGEDIAIQS SEQLIVVARLLEKLHAILQDIEQSCKEKENNKILK >gi|197325098|gb|DS990368.1| GENE 292 284810 - 285190 595 126 aa, chain - ## HITS:1 COG:Cj0898 KEGG:ns NR:ns ## COG: Cj0898 COG0537 # Protein_GI_number: 15792228 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Campylobacter jejuni # 2 104 5 107 121 145 66.0 3e-35 MTIFEKIIKGEAPCNKVLENEDFLAFHDIAPKAPIHVLIIPKKFAKDFQQVSPKEMAGMT EFIQECAKTLGLDKNGYRIISNVGIDGGQEIPYLHFHLLGGAKLRWDNLAQNISEQQRLE EAKKGM >gi|197325098|gb|DS990368.1| GENE 293 285328 - 286323 724 331 aa, chain + ## HITS:1 COG:Cj0897c KEGG:ns NR:ns ## COG: Cj0897c COG0016 # Protein_GI_number: 15792227 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Campylobacter jejuni # 1 331 1 330 330 442 64.0 1e-124 MEEIFSKINQAKNTTELEEIRISVMGKKGSLTAKFAALKNCDEAQKKTLAKELNLLKMEF EKALANKKEELSFKELQEKLQAQKIDVSLFSSCSFKGSNHPIMLMLDRIVEYFLSMNFMI KTGPLVEDDFHNFEALNLPKYHPARDMQDTFYFKDGKLLRTHTSPVQIRTMESQKPPIRM ICPGNVFRCDYDLTHTPMFHQVEGLVVENGKDSVSFANLKFILEDFLKYMFGDVKVRFRS SYFPFTEPSAEVDMSCIFCKGEGCRVCSHTGWLEVLGCGCVSENVFKAVGYENVSGYAFG LGVERFAMLAYSVPDLRAFFESDLRILEQFQ >gi|197325098|gb|DS990368.1| GENE 294 286320 - 288695 2223 791 aa, chain + ## HITS:1 COG:HP0402_2 KEGG:ns NR:ns ## COG: HP0402_2 COG0072 # Protein_GI_number: 15645030 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Helicobacter pylori 26695 # 147 782 2 615 625 405 38.0 1e-112 MKFTRSILGNFLPLENISSEVMYKTLNKIGLEVESLQNICAPKKVVVGKILECQKHPDAT KLNICQVAVSGSEGNYETRQIVCGAPNARAGIFVAVALEGAVLPQITIKKAVLRGVESCG MLCSTTELGFPAINDGIVELDASIGVLEIGKELLEYSHFNDEVYEISVTPNRGDCMSLLG IARDLSVALNLERKPLESLKSTENAPGIGRVLQITAEKGHESSLLYRAIETEPITIPLCV SLFLAYNDSLANHWLLNALNFSTLVSGVILNAYPQTFCQLGKASGENKVILNLQNDELGF ESIYHNGKKLSVIGIHSCLSEESLKDFKEGREFVILEASYIPPKIIAQKVLETKSKSKVD PKVFQRTARGSNPNLQMGFDVLGKLLCCEDVVLYSDSQELIIAQNNDSITIDISLIAKII GITLERTKVVQILQALEFQIEIPMDENLLVVTPPPFRHDISSYQDVAEEVIRFIGIDEIP SQPLVFIQSNQNNAESNLYCFKRKLAKKAIGANFNESVHFVFQDKQKLQQYGFEVLKDEL ELLNPITNELNTLRTTLLLGLLEAAQLNKNNGFNGISLMEVGEVYDSNRNQSTKIAFLQS GLAMEERYPNAKGMKGNYFAFANRISRVIGEFLLQETKSKIALFHPGQCAKIIYNHQEIG ILSALHPQIAEEFGLEDTYLCEVDLEKLSSKNPQVKMYSKFQKITRDLSVVVDKSIPYYC LKETISHLNIPIIVSFYPLDIYRDDNLKESISLTIRFELQSHHKTLEEKDIASAMEQVLE ALVQNHKVILR >gi|197325098|gb|DS990368.1| GENE 295 288692 - 290002 1414 436 aa, chain + ## HITS:1 COG:Cj0895c KEGG:ns NR:ns ## COG: Cj0895c COG0128 # Protein_GI_number: 15792225 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Campylobacter jejuni # 15 427 14 422 428 409 53.0 1e-114 MILRVLSASSFDLEIREIAADKSISHRCAIFSLLSDKPSLIRNYLKGEDTLDSLNIAKRL GLEVREEGNEMVLTPPPSIQEPKSILECGNAGTAIRLYLGLLSAQKGLFVLSGDCYLNKR PMKRVVLPLRSIGAVILGREDGNLAPLVVVGNGNLQSFDYTSQIPSAQVKSALLLSGLFA KGDSRYREPELSRDHTERMLSGMGVELESKMNGMGEVEIRLSPLKQKLKPLIMEIPADPS SAFFFALAAAIMPNSHLVLKNILLNPTRIEAFRILEKMGVKIIYKETSNTYESIGDIEIF SPQSLQSVEVSEKISWLIDEIPALAIAMACAKGISRVKNAKELRVKETDRIKAVVENLKL CGIEANELEDGFEIKGGEIQRAEVSSYGDHRIAMSFAIAGLKNGMEITQAEYINISFPNF LEILSKITQVEKKECK >gi|197325098|gb|DS990368.1| GENE 296 289993 - 290817 555 274 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227423810|ref|ZP_03906912.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SSU ribosomal protein S1P [Denitrovibrio acetiphilus DSM 12809] # 1 273 6 281 848 218 40 1e-112 MQVKLAKSYGFCFGVRRAIKLAENKPNGITLGPLIHNAKEINRLKDKFNVVVNENIQEIP KDAEVIIRTHGITKEDLQKLKEKTKNITDATCPFVTKPQEICEKMSNEGYGIIIFGDEKH PEVKGVMSYCKTIPLVVESLEALKKAKIPDKVALISQTTKNIELFLEIADFLIRHCSECR VFNTICNATFDNQESARNLAKEVDIMVIVGGKNSSNTKQLYNISKEYCEDCYLIEDFQEL HREWFKGKKLCGVSAGASTPNWIINEVVETIQKY >gi|197325098|gb|DS990368.1| GENE 297 290886 - 292238 2279 451 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417933|ref|ZP_03655939.1| 30S ribosomal protein S1 [Helicobacter canadensis MIT 98-5491] # 1 451 1 451 451 882 100 0.0 MAVVGINIQELDEIIVDEDFASMLEQYEKRESEKISQGEIVSIENGQAIIAVPGEKKEGM ISVIEIQDAQGNLLFKVGDLLPIVIMGKRNEQPLLSYKKAIRREKIREYIKNLGEDYKDK VVEGVVIKKNKGGYIVEGEGIEFFMPKFAAAFKEGSKNEGRRIKACIINVKPEEDSVVIS RKRLFEIENSVKKDVIENLLKQEGPLEGTIKKITSFGMFVDVEGVEGLVHYTEISHKGPV NPSKLYKEGDKVSVKILSYDKDKKRLALSIKDTIEDPWKEVENELEVGDAIKVIVSNIEP YGVFVDLGNDIEGFLHISEISWNKNIQNPEEFLKTGQEIDVEVIEIDTKERRLRVSLKKL LDKPFTQFVKKHKEGDILKGSVATLTDFGAFIKLDGIDGLLHNEDAYWNKNEKCKDLMKI GDEIEVKIAKIDREKERISLTRKGIIASPVE >gi|197325098|gb|DS990368.1| GENE 298 292297 - 292587 272 96 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|152992146|ref|YP_001357867.1| 30S ribosomal protein S1 [Sulfurovum sp. NBC37-1] # 1 89 456 544 552 109 58 1e-144 MQGVVRDIKDFGVFIKLDEDMDALIRNEDLFPIKKEEIKIGDSIKGVISLIDKQNNKIRV SIRRLEKQKEKANLKNFNSNADDKMTLGDILKNQIS >gi|197325098|gb|DS990368.1| GENE 299 292599 - 293087 557 162 aa, chain + ## HITS:1 COG:no KEGG:WS1312 NR:ns ## KEGG: WS1312 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 57 162 55 159 159 110 54.0 3e-23 MQTRVLIGIFSFFTCVILYVLIRNYSQAIHSYSTPNVEPYQLGKAESNATIEIPNEISWL NQLSAKDGVSYLYPASELRVKLLFENNLKKDETEIFRVSVGIIDDYQFFCINQVLSANNI DYSYYKVGESIWLVVATDNEKYLRSVLEELKHYEIQYSLSKS >gi|197325098|gb|DS990368.1| GENE 300 293100 - 294683 1711 527 aa, chain + ## HITS:1 COG:HP0397 KEGG:ns NR:ns ## COG: HP0397 COG0111 # Protein_GI_number: 15645025 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Helicobacter pylori 26695 # 4 527 2 524 524 628 59.0 1e-179 MSKFTIMVCDHIHQSGLDLLEKAADVEVLNLASLPKEELEKELHKADVAITRSSTDVDES FLSLATKLRAVVRAGVGVDNVDIEASSKRGVVVMNVPTANTIAAVELTCAHILSAIRNFP GANAQLKVERVWKREDWYGTELKGKKLGIIGFGNIGSRVGKRMKAFEVEVITYDPYINPT KATDLGIAYTRDFDEILACDIITIHTPKNKETINIIDKEQIAKMKNGVILINCARGGLYN EDALFEALESGKVRWAGIDVFTKEPATSNKLLDLPNIYVTPHIGANTLESQEKIAIEAAE AALESARGSSFPNALNLPIKETELPDFMKAYLELVQKMAFFAIQVNKNEIRSIKLEAQGE VSEYLSSLSTFALVGILNATIGDKVNYVNAPYVAKERGVEIALEVKTLQDVYKNQIRLTL LTQDGEFSVSGTVFNENTPKIVEINHFELDIAPKGRMILFRNNDTPGVIGFVGTTLAKHN INIADFRLGRYGKEALAVILVDDEVSNEVIKELAGIEACLSIKYVVL >gi|197325098|gb|DS990368.1| GENE 301 295116 - 297230 2653 704 aa, chain + ## HITS:1 COG:Cj0917c KEGG:ns NR:ns ## COG: Cj0917c COG1966 # Protein_GI_number: 15792246 # Func_class: T Signal transduction mechanisms # Function: Carbon starvation protein, predicted membrane protein # Organism: Campylobacter jejuni # 1 698 1 701 703 794 64.0 0 MNKVLSLLLWAIIAFIGAWGFGVLALHRGEQISAVWIVVAAVCIYAIGYRFYSKYIALKV LGLDDNRATPALTMNDGRDFVPTNKIVLFGHHFAAIAGAGPLVGPILAAQMGYLPSMIWI VVGVVLAGAVHDFTVLFISTRRNGKSLGEMIKLELGKGVGSIAMIGILGIMMLIIAILAL VVVNALAESPWGLFTIAMTIPIAIYMGIHMRFLRPGRIGEASIIGFILLILALYYGSVVA ENEFLSSIFTLSPVTLTYIMIAYGFVAAILPVWFLLAPRDYLSTFLKIGVIVLMGLGILI VRPDVQFPSITKFIDGSGPVFSGQLFPFLFITIACGAISGFHALISSGTTPKMLEKESHA RMVGYGSMIMESAVAVMALIAACILTPGLYFAINVAPAGLGTTGISDVAQAASIAAQTIS NFGFVITPQEILGMAESIGENSVLSRTGGAPTFAIGLAMIVSEIPLFNQGSIAFWYHFAI LFEALFILTAVDAGTRAGRFMVQDILGNVYKPIGNIHSIFWGVVATLICVVAWGYILYQG VTDPQGGIKSLWTLFGVSNQMLAGMALLLVIAVLFKMGRGKQAWVAIIPAVWVLVSTLYA GILKLLPANGEKIHDSVSHIALWQINSAKAASETNIELAEKFATIATNNLINAGLCAFFM IVTCLVLLQTIRICWKCTKGENDIPLAESPYLKASDYEGKVIAH >gi|197325098|gb|DS990368.1| GENE 302 297489 - 297746 194 85 aa, chain - ## HITS:1 COG:no KEGG:CFF8240_0305 NR:ns ## KEGG: CFF8240_0305 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: C.fetus # Pathway: not_defined # 1 84 1 84 86 98 60.0 9e-20 MDNHFVNTTEEEILNFYQNISKIVRNVRQKKGISQLDLALEIGIKSVAFYSNCESCRYGK HFNLEHLYKISKALDIDICSFFKYT >gi|197325098|gb|DS990368.1| GENE 303 297864 - 298079 169 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417939|ref|ZP_03655945.1| ## NR: gi|224417939|ref|ZP_03655945.1| hypothetical protein HcanM9_01552 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0626 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0626 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 71 1 71 71 108 100.0 2e-22 MVLFALFANFCFAADDELTNDITNKAIDIGFGAISGFLSGKSGEEIAKEAKEKTIEATKE TANKKLDEVKK >gi|197325098|gb|DS990368.1| GENE 304 298107 - 300035 1802 642 aa, chain - ## HITS:1 COG:jhp0106 KEGG:ns NR:ns ## COG: jhp0106 COG2604 # Protein_GI_number: 15611176 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori J99 # 10 633 5 627 627 603 50.0 1e-172 MSDTLNPRLEKNLKALYQKNPLLAAQLKILEPNKKYEVYIGNDPLNINIYDKENKVALFS KEPLAEITQKIKEFEPYNLYPFFYFFGMGNGIFYKYLSSNPSLKKLFIFEPELELIYIAL NFVDFEQEILEEKILIFWTKTINFGQLDQYLVKEGQWIYSKIYNLHIYNSYYGKYTEECL DLNAIITRSLEHHVIAVGNDSTDALIGLEHHLLNLPELITTPSFKELISNAKTTDTAVIV STGPSLYKQIPLLKEYAPYITIISVDASFPILTKHGIKPDIVATLERVEPTADFFIKTPK EAQKGVIFALTSIVHKATTNAITQGIKSFSMRPFGYTRFFDLQDYGYAGIGMSAANMAYE IIVHSHFKRCIFIGQDLAFSEDGKTHSKDAIFGETESQYKRKENATEKLVVPAYGGVGVV ETTSVWKMFLNFFEKDIAETPYEMEVINSTEGGARIVGTKEIPFLEALQSLPKTKKKAIK LTPPSKEQIKANQKHIQSKVKEFLDYGYKKKKVVEKTFLKVVKMTEELEHLNKANKLEKI NFKKMDKLLEEIDDIKLFFQEDIFIKVFSDAVQSYIVHQELEFAKIAVRPVKTLIEKQVK QIDWLYAHKFWLFSLAGGMDATLEIAKRATKQWMKLTAKYNQ >gi|197325098|gb|DS990368.1| GENE 305 300090 - 301640 2160 516 aa, chain - ## HITS:1 COG:HP0115 KEGG:ns NR:ns ## COG: HP0115 COG1344 # Protein_GI_number: 15644745 # Func_class: N Cell motility # Function: Flagellin and related hook-associated proteins # Organism: Helicobacter pylori 26695 # 1 516 1 514 514 534 72.0 1e-151 MSYRIYTNVNALNAHTSGLVNNRNMSESLEKLSSGLRINKAADDASGMAIADSLRSQAAA LGQATRNANDAIGMIQTADKAMDEQIKILDTIKTKATQAAQDGQTTTTRNALQSDILRLM EELDNIANTTSFNGQQMLSGAFTNKEFQIGAYSNITVKASIQPTNSHKIGHVRYETGAEM SVSAGSSNLNEVTLRFLNTDGTNNYAIESIKISTSAGTGIGALAEAINKNSDTLGVRATY NVMGQGAGAIASGTVRGLVINGIAIGDVNDVQKNDYDGRLINAINAQKERTGVQASLSIS GALQLTSTDGRAISVQVASGSSVLGGGSFAGVSGTTHAIVGRLTLIRLNARDILVSGTNF SQVGLHSGATNIQNGSGIAQYTVNLRSVNGEFDANIASAIGANANTAVAAVNSNGIGAGV TSLEGAMAVMDMAQSAQEHLDKIRADLGSVQQQLVSTINNITVTQVNVKSAESQIRDTDF AEESANFSKTNILAQSGSFAMAQANQVQQNILQLLQ >gi|197325098|gb|DS990368.1| GENE 306 301872 - 304205 1871 777 aa, chain + ## HITS:1 COG:no KEGG:WS2197 NR:ns ## KEGG: WS2197 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 2 627 8 635 692 518 43.0 1e-145 MQIQTQEILNRLKEAKTKENINECMLLIRAFGQEWQKQLEDSYREEIIALLKEKILEIIV SKGDILDKSILWAYGLFKCKEETQKDERFFKYFEFCSPYVEDANASYYERLLFIEFASAA LLLSGDKEGAVKFFFSKVIYLSLRENYMVELDPFAREFLYYYEIPVEWILEIQREALKWE NFSKLDDFTKKTIFLWNMHCFWNVKHYFNHLKWRENFPVWLDCLKGLLEQGNLDMAMYVE FYIYHKFGNSAQTQEDWQEYNDKVVKLVEPYYVEYGKNLPKCKASIGGKSGEKIKIALIK DRIVENSPYKVEYSLCKALMQNEEFASQYELVVYSMNYIQKSEDGIEAMQSFVQVGVPVV CPAYQLTRQHGYYYSHLQKALSIRQSLLSEGVDIIIITGTIDCADFLFATRSAPKQIYWS HGNGRYDIVGIDERISHFSPSNTPYVFKSFSVPMDIERFYNPPRDPKLIEAERAKYPITK DTVVLGVIGRLVKVDSDEYLECIAEVMKKHSNTIFIAAGSGNMPVIREKVEKLGISDRFF MPGFVDPHIYGHIIDIFCNTFPMGQGESLSEFIHKKGTFLTRVDNRLDIEDDKMYKLKMS DKVLIYFENLEALTPKVEGYSEFIKGDIIFIYNKKDCSLDTEVQKRALYCEFTHKEMLQI GDYSCKVKMNNKVEYITGNFIREKQNIWQVYYAENLKYYLDIVNTLSCYLDDSGRYVGWL CGGFGFKGYYKNLAEMIENNEIRSKLDALFKLHNKLTYNNQVRICNQSFVGAVNAEN >gi|197325098|gb|DS990368.1| GENE 307 304192 - 305130 589 312 aa, chain + ## HITS:1 COG:no KEGG:CFF8240_1585 NR:ns ## KEGG: CFF8240_1585 # Name: not_defined # Def: radical SAM domain-containing protein # Organism: C.fetus # Pathway: not_defined # 1 310 1 304 310 448 69.0 1e-124 MQRINIPSHYNYIALFLTLSCNLSCSYCINLNERGSSRSSVSKKQIKPSEWVDFINRICL LDEKGNPREDIPLTLQGGEPTMYKGFYEVVNGVDSRFKLDLLTNFMFDVDEFIQRVPVEK FTRDAKYAAIRVSYHPGQNKIDDLIIKHHKMRDAGFYVGIYSVATPQNMEHINEIKEKCK KEGIDFRVKEYLGFDGKRWHGTYKYQDAISQKTEKYCECKTTELIVGPNGKIYRCHSDLY ENRTPIGNILDSDFKIEDIYRPCYVYGHCNPCDIKVKTNRFQEFGHTSVDIKNIRDLTSD ERVALNGGYFGI >gi|197325098|gb|DS990368.1| GENE 308 305127 - 306221 758 364 aa, chain + ## HITS:1 COG:PH1017 KEGG:ns NR:ns ## COG: PH1017 COG0535 # Protein_GI_number: 14590857 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductases # Organism: Pyrococcus horikoshii # 30 328 13 312 373 78 25.0 2e-14 MSDIFRIDSHKLIFHPTRVSQWLESYGNWEKEKEIYPIYVEVSPYGACNHRCTFCGVDYM GYKNIKIDFEIYKQIVREMGDLGVKSVMFAGEGEPMLHRDLDLMIEATKKAGIDVAITTN FVPIKLDKMPKILKNTTWIKASINAGNAKVYSQIHRTREDDFYRVLKNLEESIKIRQKIE SSCTIGVQMLLLPQNYQTAIEFAITLRDIGVDYLVIKPYSQHLFSRTREYEGLDYSQYLF LEKSLNELSSEEFSIIFRSDTMKKLTGNRNFYEKCYSTPYFWGYISANGEVYGCSCYLGD DRFSYGNINQNSFKQIWQSIKRQENIRFIQNDLDIKKCRVNCRMDSINRYLWELKHSNSH VNFI >gi|197325098|gb|DS990368.1| GENE 309 306232 - 306738 381 168 aa, chain + ## HITS:1 COG:PAB0648 KEGG:ns NR:ns ## COG: PAB0648 COG0535 # Protein_GI_number: 14521167 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductases # Organism: Pyrococcus abyssi # 30 125 21 115 373 60 35.0 1e-09 MKEFVLDSHKLHYHFERVAEFQKNGDCYPIYMEVSPVGLCNHRCIFCAYDYIDYPNRHLD KERFLSFLDEVASLGLKSILYAGEGEPLIHKNIADFVKKTKEVGIDCGMFSNGELLSERL AEQLLPYLTFLRFSFNGGDAQTYAKVHKPSRNVGSNIGSGGGGISINE >gi|197325098|gb|DS990368.1| GENE 310 306731 - 307303 411 190 aa, chain + ## HITS:1 COG:no KEGG:CFF8240_1586 NR:ns ## KEGG: CFF8240_1586 # Name: not_defined # Def: radical SAM family protein # Organism: C.fetus # Pathway: not_defined # 3 188 157 340 356 218 59.0 1e-55 MSKVLHNIEYAVNFKNKNQLNVDLGSQFVLLPENKDTLLSAISHLKNAGVDFISVKPFVF QNEQQKYSERQGFIFFDEIKDLAKEAKSYEDDNFKVIFRENAFLNKQNGRSYSHCYGCNF ITTLNSAGDLATCLPYWNKEEFVYGNIYQNSFYEIWNGEKRKKIKSFLERDLNCQKCPTN CRPNAINEPK >gi|197325098|gb|DS990368.1| GENE 311 307369 - 308148 706 259 aa, chain + ## HITS:1 COG:TM0954 KEGG:ns NR:ns ## COG: TM0954 COG3959 # Protein_GI_number: 15644626 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase, N-terminal subunit # Organism: Thermotoga maritima # 1 259 12 274 286 220 43.0 3e-57 MTQTAKEIRKTILQIANRAKSPHIGSALGCVDILSALYFKVLNLQNYETRDIFILSKAHA AMALYATLYHRDLMNKQTLLGYYQNGGTLPAHTDRNSHAYIEISAGSLGHGLPIGIGMAM AFKKSKEDRKRNVYILMGDGEIQEGSIWEAAMLGSKLKLDNIVVFIDRNDLQGYGRASEL VEFEPLEDKWKAFGWDCIRVDGHCEEKIVEAATNRRNRPLCIICDTIKGKGVEFMEDKLE WHYYLVTDEIYSKALEVLK >gi|197325098|gb|DS990368.1| GENE 312 308145 - 309020 868 291 aa, chain + ## HITS:1 COG:TVN0667 KEGG:ns NR:ns ## COG: TVN0667 COG3958 # Protein_GI_number: 13541498 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase, C-terminal subunit # Organism: Thermoplasma volcanium # 1 290 6 308 316 130 28.0 4e-30 MRNAIANCIIEVAKKDSNVFLISGDAGLGVWDTFKEEYKEQYINPGINEALCVSMAAGLA LCGRKVVYYNIAPFVMMRPYEQVRNDICYQELPVILVGTGSGFTYMPSGMTHYALEDIGL ALSLPNLNIFSPCDPLEAKACFQYAYHSKKPSYIRIPKAGEPNLHKREIEDVAQLQFLLK NKSEILLLSHSSIVQEVLKAGEILGCDVASKPFINSMDFNLESYKIIFVIEEHFSYGGLG TFLRSHTNANIEILGVPNKYVHLIGNCDYGRTFFGIDCKGIVESVQKRMEL >gi|197325098|gb|DS990368.1| GENE 313 309020 - 309682 466 220 aa, chain + ## HITS:1 COG:no KEGG:Geob_0665 NR:ns ## KEGG: Geob_0665 # Name: not_defined # Def: methyltransferase type 11 # Organism: Geobacter_FRC-32 # Pathway: not_defined # 1 220 1 220 220 298 60.0 1e-79 MGVLRNIFTKLHQKTKRDYFTRMADSKVECMGIAKKYEKDFWDGDRRYGYGGYKYDGRWE AVARDLIEIYQLNNKSKILDVGCGKAFLLYEIKKILPNIQVVGFDISEYAIKNAKEEVAE NLFVYDARSPFPFGDEEFDLVISLGTLHNLALFDLKIAFSEIERVGKQKYIMAESYRNNQ ELFNLQCWALTCESFLNPSEWIWIAREFGYKGDYEFIYFE >gi|197325098|gb|DS990368.1| GENE 314 309691 - 310755 908 354 aa, chain + ## HITS:1 COG:AF2009_2 KEGG:ns NR:ns ## COG: AF2009_2 COG0535 # Protein_GI_number: 11499591 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductases # Organism: Archaeoglobus fulgidus # 29 207 11 178 366 72 28.0 2e-12 MGLLYTKYKMFHYKDKLDSLPKDKAIMPPIHIRIKPTNVCNHDCWYCAYKVSHLQLGKDM VERDFIPEQKMLEIIDDCELMGVKAITFSGGGEPLIYKYMPQTLKRLIETNIAFATLTNG AKLDGEVAELFAKYGTWVRVSMDGYDNESYQKFRGVGKKEFDKIISNMEKFKKIGGQCYL GVSYIVGQDNWHKIYEISKILSEIGVDSLKISPAIVSNEGGKTNIYHQAFYKQAKEEIEK AQNDFGKTLEIYDSYHYQLNSFEKDYSWCPYSQMLMVIGADLNVYPCQDKAYNLDEALLG SIKNISFREWWYQNKESFFRVNPSCVCNHHCVAHEKNKMILEYLNADEKHLGFV >gi|197325098|gb|DS990368.1| GENE 315 310766 - 311932 874 388 aa, chain + ## HITS:1 COG:no KEGG:CFF8240_1594 NR:ns ## KEGG: CFF8240_1594 # Name: not_defined # Def: hypothetical protein # Organism: C.fetus # Pathway: not_defined # 2 233 3 227 248 236 53.0 1e-60 MNEFVRFYEENGISPVSQDISDLELHIKRRERLYRLLGIDSRLFKDADILEVGAGSGYNT LVFLLLGAKVDIVEPNPVGRKEMQKLFDNYSIDPKRYRIYDCVIEKYESSKKYDFVIAEG FLPAFGDSEREKILQALLKQVSHNTYLILTTICEFSYFFEYLRIVLGLCLVREVSNFSNK VQKLCVAFKSHLDSLGFASRPIEDWVKDSILNPTNDHFSYSLKKSAEDIRKFSIYNKEVG RFDVIGISPNFILNLSWYKDMGYSYIDAVIEQFDCKKYLLLSTEFKEMNLNQKTIGWLSD NVVQLRLLVHKLRKNVDFSIIEAIVELLQQMSNNCFQLGEFFVESLRECIELLKNPLELT EYKISAMPNFSRAWGRGQQYMSIKAIIE >gi|197325098|gb|DS990368.1| GENE 316 312390 - 313115 499 241 aa, chain + ## HITS:1 COG:TM1724 KEGG:ns NR:ns ## COG: TM1724 COG1028 # Protein_GI_number: 15644471 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Thermotoga maritima # 5 240 9 243 246 92 27.0 6e-19 MLKVLITGASSGVGLEVARRFHNENFYILLVARSADKLLAIKNELKNNIEVYPFDLMDRN SLHNFLLSLQSDNILPDIVIHNVGGRLEADEQPLTYEALQQSVHLNLGIAVSINSFLLPF YVKRKKGYILHISSDSATNGEGAPGYVASKAALNAYIKSTARFYAKDNICINGVMPGIIE FEGSSWARKRQIAPKIYYQALSRQPLQRFATLQEISQFILLLVKAQNMQTTGQIYILNGG K >gi|197325098|gb|DS990368.1| GENE 317 313115 - 314044 657 309 aa, chain + ## HITS:1 COG:no KEGG:amb0072 NR:ns ## KEGG: amb0072 # Name: not_defined # Def: Fe-S oxidoreductase # Organism: M.magneticum # Pathway: not_defined # 21 307 8 298 325 215 39.0 2e-54 MLETKEDIAQRLGILDYDACLLFPRYFEIETINACNARCIMCTINEWNASVKKIISDTLW QKFVKNVANYVNVIEKITLTRDGEPLLDKKLSQRIQELKCIGIKKVVIVTNAQILDKNKA QEILESGIDEVMFSIDGYSKEVYEKIRIGLNRERVYSNVLNFIKLRNESFPKVCIKVRFI EQELNKMESKIWLDFWKSKIKSTDVAYIMPLHSWGNQLVSEKQEKIELFSSFACISPFGS MAIHYDGRVGLCGVDYGGKCLMGDFSRETIEKIWRGNKFNEVRDLHLSKQRNVIELCRGC DLWDRTYKY >gi|197325098|gb|DS990368.1| GENE 318 313953 - 315647 1345 564 aa, chain + ## HITS:1 COG:SMb21418 KEGG:ns NR:ns ## COG: SMb21418 COG0500 # Protein_GI_number: 16264993 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Sinorhizobium meliloti # 43 317 3 279 410 174 35.0 3e-43 MRLEIYIYQNREMLLSYVGVVIYGIELINISLGVRMDRVFKIQSCRLCGCNDLKKVLELS KNPIGDRFFKNKELALSCELHDVVVMMCNVCGQMQLSEVVEPKEIYEQDYLYTSGTSVGL VEHFRQGAKDLIKRFKIPKDSLVIEIGSNEGAMLEVFKNEGMRVLGIDPASIAVEIAKKR GVETICGFFTQNLAREIKLQKGKANIVIANNVIANIPLLADVVKGIELLLDDNGVFVFET SYAQSVLKKHLIDTIYHEHISYFSAKPLAKFFNHCGLELFDAEEIWTKGGSLRGYVSKPL RFIKTQRLMEIIQNEDAFVFASHIVANSVNLERLFNEIKETLKEGGEFIFESFYAKAVLE KNLVDMIFLEHINYLYLLPLCEFLEKKNLNLYDAKIIESKGGSIQIKITQDMSKSKTKEL LSLIEAEKDFFKQSDIFINFTKGLEDFREKVRKLALEIKERQGSVGVYGASVGGVMMVYH LGLSDVIDYFLDDNIVKIGKYAPNLGVLVNDSKILEEDPNIKEIINVAWRFIDSIAQKHK EFLKRGGIFYNLELPQLEIKECRE >gi|197325098|gb|DS990368.1| GENE 319 315640 - 316449 498 269 aa, chain + ## HITS:1 COG:TM1724 KEGG:ns NR:ns ## COG: TM1724 COG1028 # Protein_GI_number: 15644471 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Thermotoga maritima # 1 227 3 244 246 85 30.0 7e-17 MNKKNLFVFGGSKGIGSVFTRELSKKGKYNVTLFARTNPNSIAVEFYSVDFCHQDSFLKV LEEVAKIKGKIDHMVFFLKFRGNKFMDSWEGEIRVELDTIKNVMEILDVYLSDDSSIVFV SSLCGSLISLNQSIGYHMAKAGLEQMARYYAVKLGFRGIRVNVVAPTLTLKPENEEFYNQ ETELTALYSRISPLGRIAKSEDVCEVINFLLDVKFMTGQILRVDGGISLQEYESLFRDVV EEYLNRNLQKKQCGALNYSVSGGGGRIKP >gi|197325098|gb|DS990368.1| GENE 320 316489 - 317565 1160 358 aa, chain + ## HITS:1 COG:MK0156 KEGG:ns NR:ns ## COG: MK0156 COG0399 # Protein_GI_number: 20093596 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Methanopyrus kandleri AV19 # 11 342 24 376 394 169 33.0 8e-42 MGKINWWNIELGEEEQEAIRKALATRHIAQGEITEEFESRVADFLNVPYVVAVPNGTQAL SLAYMASGLKEGDEVIVSNRTFIATAHAAMILGAKVRVVDVKENQTIDEELIEDRITNKT KLVVPVHMNGVASNMDRILEIAKKYNLQVIEDACQAFGSRDIKGRYLGTIGRFGCFSLGL AKILTTGQGGLVVAHNREDYDLLRRIRNQGVFDVRLENIYNIQAYNFKFNDMQASIGIVQ LSKMKQKIERVKTIYKRYQELLSNNLQILEVNANEIPMRSIIIADQVRDIKDFLEKMGIG SAYESPSLNHCSHLKIQTVFPKSDIFHNRMLILPSGPDLKIEYVDEVCLNIKRWFGGN >gi|197325098|gb|DS990368.1| GENE 321 317565 - 318518 668 317 aa, chain + ## HITS:1 COG:SMb21235 KEGG:ns NR:ns ## COG: SMb21235 COG0223 # Protein_GI_number: 16264487 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Sinorhizobium meliloti # 1 242 1 250 312 80 26.0 5e-15 MRCVVIGTTECARSLAKGILKSGHTLAAVISLKKELLPNNSISLELFAREHGALYFEVSD INQEELLLKNLKMDILVCVWPKILRENIFKIPEITICAHPTELPNNRGRHALHWSKVLGL KQSALTFFEVDSGIDTGKIILQKFFELDESDTINTLNDKINILAEAGIQEILNNCELITN RKSQRQGGNYWRKRNLHDVLLDMRMSKEMIINIVKSFCSPYPCAKLIVDDRVIDIQEAYE VQGLECPINIEHGKVFNLSSCEIVAKCENGLIGLKSKNDKDFEFLMNAFDERGGGYIFIL QVIIWSNTKLSFSVSGG >gi|197325098|gb|DS990368.1| GENE 322 318520 - 319098 535 192 aa, chain + ## HITS:1 COG:VC0252 KEGG:ns NR:ns ## COG: VC0252 COG0110 # Protein_GI_number: 15640282 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Vibrio cholerae # 2 181 6 187 188 142 41.0 5e-34 MFYPRKELKKMGFKSLGENVYIDTRTTIDNPRSISIGNNVKIGSFVILSGDIIMGNYIHI ASFSGLYGGGGIKIEDFVSISNYVRLITESDDYSGESMSAPFVPDKFKFKAQKDAICIKK HCIVGSGSLILPGVVLEEGVAVGAMSMVSKNTEAWGIYVGIPARRIKDRSKKILQLEKQF LNENNKNSNLLI >gi|197325098|gb|DS990368.1| GENE 323 319660 - 320553 898 297 aa, chain + ## HITS:1 COG:no KEGG:Geob_0668 NR:ns ## KEGG: Geob_0668 # Name: not_defined # Def: glycosyl transferase family 9 # Organism: Geobacter_FRC-32 # Pathway: Lipopolysaccharide biosynthesis [PATH:geo00540]; Metabolic pathways [PATH:geo01100] # 1 289 20 303 326 301 47.0 2e-80 MGKVVSLGDVVRCTVVLEALKQKYPNSCITWLVAPEAFPLIVDNPYLERVLVWDEFIPFA LMREQFDMVVNLEKIHGICGLADMIQAWEKVGFRFDVVSGNYSAYERSLGATNYIQDKAS GKKSHEIWQKVIVEMVGCEWREQEYSLGYKPKPKEKFQVGLNYQVGSKWPTKAMKKEKWE ELAVLLEKDQISFSWQQGMNNLYDYMDWIAGCDVLVTHDSLGVHLALAMKKSVIVLFGAT SGEEIYYYGRGVSVYPKSLGLSGYECIPCYNPTCNKDIHCMDFIELNDIVGYINRYL >gi|197325098|gb|DS990368.1| GENE 324 320652 - 321833 813 393 aa, chain + ## HITS:1 COG:no KEGG:CFF8240_1608 NR:ns ## KEGG: CFF8240_1608 # Name: not_defined # Def: hypothetical protein # Organism: C.fetus # Pathway: not_defined # 47 376 3 325 335 113 27.0 2e-23 MDYEVLILDDCSTDNTIEIVQEYLKDKRYQYIKMPKKMGFGDKVYKFAQDSKLYKGDWVL LLSDDEFLYNENHLENIYIHIQNNPQVNFISVDAGYGYGEIVIFEQQSNVVLPETFLYQN LNDKQKEILQTKIKVVYKKDFLIQQDPFNNVTDNHRADITAEVDYLKLYKAASMGYVGGI AHIFGVTPNARAKYLDFYNWITSSGMCCVNMDSQEKFYLILKQYYSEVSMCLNAFFDWGG NELAGALSYFYDDENYPIFLRRFAQIYKDKFQDKLYCYYEDFNKNLMTEIERDIAIENSK NIVIYGENSWRVQLEDFLVKRGKHILFVADDKKEGYKTYEDIVREKENIDLVFISSGSPK IIYQMMQKLQFKKNRINVATLILRDENWKYNLN >gi|197325098|gb|DS990368.1| GENE 325 321846 - 322715 683 289 aa, chain + ## HITS:1 COG:no KEGG:CFF8240_1609 NR:ns ## KEGG: CFF8240_1609 # Name: not_defined # Def: 3-demethylubiquinone-9 3-methyltransferase # Organism: C.fetus # Pathway: Ubiquinone and other terpenoid-quinone biosynthesis [PATH:cff00130]; Metabolic pathways [PATH:cff01100]; Biosynthesis of secondary metabolites [PATH:cff01110] # 3 150 4 149 156 155 51.0 1e-36 MITFSFGRNWKRFIEYVANEQILNRAINSLRKYFGEDFDFSDKVFLDIGCGSGLFSVAAL QLGCKRVISLDVDINSIEATKMAGEKFKPQNKENWQIFEGSILDSWLVDKLKKELDNQNV ILYSWGVLHHTGNLKLAMQNAMNILSSGGGGDKYAYIALYNKTEASSWWLNKKMYYNQTN IVMKIFMVCFYTLFLTFEDIRKGRGWNMYDKDRGMYKITDVIDWLGGLPYEPIANDEVIE IWEKDGFLCLKNTSTRYYKPIYPKSKIYRLFVYLKVVGLGCNEFLFKKK >gi|197325098|gb|DS990368.1| GENE 326 322738 - 324171 882 477 aa, chain + ## HITS:1 COG:no KEGG:WS2196 NR:ns ## KEGG: WS2196 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 2 466 4 448 452 113 27.0 2e-23 MKYYIYPNGGNAKYLANAISILDGGGGEISFIDDSLKTHSLEVVIPKIRNELSNGEAKIL LSSQKYMHQCLQKLQEKGIQVAYNGIKYLGERLNLMLKEKYKGQKICGIFCDTGGNPLHK YLGNIREILNNNGIKLIYFLYYESEYYKEFLEYHTKNNDEIVMANYEFLSQFDFVPFVIT HYNVLHFHPNVVTLRIHSSFDEVSNYVWLVDLYQDRGIERADTIANYLSTYLNIHSQTHY RYFEKNQQIGGVDPNPIPRFLKGGYPSIDRETKESQGIDFSMKRDTVIFISALINFYYED YYSDILEVVLKEGYRVVFKSNPSHISFKEREDSFALKFKHYSNFIYQCNDEPQLSLENKN RSITIVGACSSLMYSYPALTKRPAILLYPEKNTIPKDLLDEDCFYNPKLHIRLFKEEAKE GIIKYLKKLSKDLEYQKQWQKQIEDYCKNDLYNFGDASRYIANFILEWYQARSILKE >gi|197325098|gb|DS990368.1| GENE 327 324174 - 325616 784 480 aa, chain + ## HITS:1 COG:no KEGG:WS2196 NR:ns ## KEGG: WS2196 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 4 471 6 452 452 102 24.0 5e-20 MHYYIYPNGGNAKYIAWIIDFMNGVFKERKDNDTYFFIDDNSPEQSLERLSAAVKEEIFQ SKAKLLLSSPKNYDKLLDNCLKYGICECYDGVKISANWLNSYYREKFDCSNIIAVQLSGF SSFQKHLGSICQRLQEGGLQIVYVVSLGHYWFSEIKNDLDKRGEKYLCADAEILENLNFF PFIIEQTNIARFYTGVYSLKIVTSMEQISNRICSTKELLEVLNISFLLSSYVNIHSKSIY KEIFKLQSFNGILPSPEPRLIRGGYPSIEKEVDEFGDTIDYTIKRDTVIFISTFLNFNQP QKLSRYILKALDFGFRVIFKSCPPLEQTHKSREDDFAEAFKSYPNFIYWQNETPRLSKEE LQRSITAIEIYSSMMYSYPVITKRPAILLYPNRNDTNQEILENDCFYQENLHIRIFEEDE SSFIEVFVKLSEDLSYQREWEKKILDYCQNDLFNFKNASIYLSNWILKWYKKRRLLKNSL >gi|197325098|gb|DS990368.1| GENE 328 325642 - 325842 181 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417963|ref|ZP_03655969.1| ## NR: gi|224417963|ref|ZP_03655969.1| hypothetical protein HcanM9_01684 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0650 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0650 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 54 1 54 66 94 100.0 4e-18 MQIFILNFWRTRVDNVIKTLGLENFDKTNILQERKIQDFFDDELYKLSKEVEFINNNGGG GNNNCF >gi|197325098|gb|DS990368.1| GENE 329 325811 - 327193 1097 460 aa, chain + ## HITS:1 COG:no KEGG:DVU0182 NR:ns ## KEGG: DVU0182 # Name: not_defined # Def: radical SAM domain-containing protein # Organism: D.vulgaris # Pathway: not_defined # 142 438 31 306 307 90 25.0 2e-16 MGGGAIIIAFNYPLLEEKDRNFATIFFKTAIKLEENLYYYPKPNHYMEIDDFALFALKNK LTPENLKVESLYRKNLIQRDLRGKLHGILRREKHIEEKYINKKFFYESRKLFNLSWQWQE YRVAKEQLEYDLIERMQEWYPYPLGFNISIHNVCNLTCVMCPFFSEEFKVNHQTDFFKTK TFLEDKFVYEAIDYCAEASVSNPQLTVGFTAAGEATLDQRLPDFIHYARNKGIPWTYIVT NGTLLHKIGKELLDSGLNRMTISIDGATPETYRKIRGADLNKVEKGVRECVEYARELNAK GHKIEFDLNCVLTDTFCEAQEKELYLSKWEDCRDIIVRIFFTRLVIYDKQGNDINKDKTF SQRDMVCSFPWSNYAIDCYGNVTVCCTMDASSMYQPISIGNVKELGVRGVWNSEMAKKLR KEQLQQQFKRFSLCAGCAEKFKSCFDEDNCVTTKHNLDIK >gi|197325098|gb|DS990368.1| GENE 330 327190 - 328617 1010 475 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417965|ref|ZP_03655971.1| ## NR: gi|224417965|ref|ZP_03655971.1| hypothetical protein HcanM9_01694 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0652 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0652 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 475 1 475 475 928 100.0 0 MKKVLIYGFGWAGKSCLLLCEHLNVDVNIVDDNEEFSEFDMRFKRIEAVSAEDYSIVFIA VIDNQKALKIKSRLLELGFLEEKIKHFYEMRYSRNMFYLLQERYQNQDQLLMECLGDDYE MPILHRFLKNLILKHYNNKKNDKIKLKLRKEIDAKYPLYNVFAKMHEVSMNWWEISTINY PGFNVWSSIYRKEDKNFYFIDKIDFKQIKNRENKKLIVVFGNSALRVEYLVGQSITDFLR KDYDLREYIVINAGVSGYTIYEQLLLFNALFYCLKPDVVLSFFGGTDLMLGFSACDKLLK DHKMIYYPNMWESGYKTKSGSVLPIYNELKGLVNGDVFGTINGKVALQDICEAIHVRLVQ FMQIATLEKAKFYAFIQPLLPCKLKWSDKEVEMRLKEKKRLSQVDPYQNELIEKIPIFID ALKMELSSENFVYDLNEKIKEQKGTFFESNWIHCNAKGNKFCASEVLKILKTNGL >gi|197325098|gb|DS990368.1| GENE 331 328775 - 329917 922 380 aa, chain + ## HITS:1 COG:no KEGG:WS2196 NR:ns ## KEGG: WS2196 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 2 375 3 400 452 65 22.0 5e-09 MSKVYIYPKGVTGEQLGWCMEYVDGVCPEYIDDDIKGRNFNDLKERIALEKGIIYIALSR LSPKYKLNLETIVEKIKREKIDYILGGMEEYAQKAIYKLGNECARKGWNAICALILPDFV KDKHFGFLEEELKKRRVKVLLFCSQRGSYERALERLDEENQCLLYLSYEFLPLLDFPKVI CVTGTYQYHKNVKVIYVGHGIVDWNVNGRIQAVLGNDVCVVGREFMPKKADSITRFLPIG YLGYDKIAKDFSSTKMLVKESVLFTPYDLGELERMIPSIKEVLERFSVILRYRYEWEDSH LQYLEQFLDHQKFTIDNSNPMSLESYQKSFCLVCSKTTSKFSFPLVTLCPSVVVEHNQEG YDQDIGELGVNVSLIGGGGF >gi|197325098|gb|DS990368.1| GENE 332 330138 - 331940 1317 600 aa, chain + ## HITS:1 COG:mlr6755 KEGG:ns NR:ns ## COG: mlr6755 COG0367 # Protein_GI_number: 13475635 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Mesorhizobium loti # 5 597 33 645 665 291 33.0 2e-78 MINGGPDDCGIIIKDEIVLAHRRLSIIDLSCYSHQPFCDDRYILVFNGEIYNYKEVAKTL QNKGVNCVARSDTEVLLSSFRHWGATCVEYFEGMFAFVIYDSLERKLYLFRDRFGVKPLY YYYDSHCFLFASELKALMAYPKLQKKIDEVALSYFLELGYIPAPFSILKNAYKLEQGHYL QIDLENIKKQGLEKAIKKVRYYDVKSYYRINNCFDSVCFQEKLHRSVSLRMVSDVNVGVC LSGGVDSSLVCAVLKESGYDFETFSISFMESSFNEGNYAKKIANILGVKNHQFLCSLEEA QNIIPSLPWIYDEPFGDSSAIPTLLLVQNIKKTHKVALSADGGDELGLGYDRYFWAFYRY RKYQKYKNLSFLLKILNPEIMVKLLQQCGLKVGIDKFLRIKGQLDSKSFLEHYLVEITHL RREGLRANGLPILNKWQIFDSDGLDYFKQMSYFDLQNYLSEDILTKTDRASMNVGLEMRE PLLGKELVEFMVSLNPLENLIKQEDGQVISGKRIFKKYLERFLPRELIYRPKMGFGIPLE QWMRGNLRHLLDEILPYAHGYLDGRFLEKLIGDFDRGERVDFAKIWYIYIFCAWRKEWNI >gi|197325098|gb|DS990368.1| GENE 333 331928 - 333502 1133 524 aa, chain + ## HITS:1 COG:no KEGG:CFF8240_1620 NR:ns ## KEGG: CFF8240_1620 # Name: not_defined # Def: hypothetical protein # Organism: C.fetus # Pathway: not_defined # 307 524 257 459 462 71 29.0 1e-10 MEYLSKYEKIQLQEYCYIYPNGGCAERLLKILREIYREVQFVGIDDKEEASSLERYAKEI RQSEKYVLLMGGDVYEELEEKCRKAGIQRLIDGREFVAYLLCKNILELSVGGGAKFELLD NRILHIYEDEWIKHYYYFYDLFTYYCSKIALEELRQCVLQYCQVTQNNLEKSGYSLELQK GIMFDFAPHTFEITSFILDDVKVAWYFGSMEYYSKYKDKVAKQSVLIAPWVIADYFINYE VTLRLSGGMPSLNQARRKVVGIGHSLAEAFALAPRNIKEKNLRQYVYYYFSPFSHYCAMD RESYNAFMKIFKENSLEIEVCKSGSPRLDHKIQLQSPPRSLVKQFLFIPRLMKAEELKEA ILFLLNNNKKVMFRPHPALRNYVEYMESGDPYKILDEFKEYSNFSFDLSENLSYELLMES IVIADNSSVSYSTPLSVCKPVILYALPKKEFDLRIENFGVSFTNPKLHRVALDLETFKKV ALQLELDLKTKGKQILEELKQYQKEEVYHLGESSKWIASFLENL >gi|197325098|gb|DS990368.1| GENE 334 333559 - 334665 771 368 aa, chain + ## HITS:1 COG:Cj1127c KEGG:ns NR:ns ## COG: Cj1127c COG0438 # Protein_GI_number: 15792452 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Campylobacter jejuni # 14 347 14 350 365 110 28.0 6e-24 MNVVFVIDVMRQGGGAQKVLSILLPILQKNQFEVELIVLKKTDQLLEIPEVKTHYLLEQE TQGLMVNAFLILDRISQIAEKADIICSFMDFITSYFVAMSAKILNKPYCIFVRCEPSFVA KTFPQSKINEKLYSLCMQNAVRVICNSKSSSQDIIENFGVAKQKIGILYNPIDFKGIEAM ASVGEKFKRENNEIICVSIGRLHQQKNYQILLEACKVLQERKINIRFFVFGEGELREELE AKKQKYKLKNIEFLGYQTNMYGFLKTADIFVHLSITEGFPNAVLEAASVSKPLVLSNIKP HKEIFKKNALFFDTNDVNGLCDCIEILQDEQKRKDFARLARACVENFSYEHFELQLLKEF QQIKTCCL >gi|197325098|gb|DS990368.1| GENE 335 334746 - 336491 1238 581 aa, chain + ## HITS:1 COG:BS_asnB KEGG:ns NR:ns ## COG: BS_asnB COG0367 # Protein_GI_number: 16080106 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Bacillus subtilis # 1 573 1 607 632 229 28.0 1e-59 MCAIVGIYGESNIASLESILSLMQKRGPDGSYLFFEENFVAGMNRLSINDLYFGEQPFVN IDSSIVVLFNGEIYNYRELKKGLEQKGYIFKGHCDGEILPFMYEEYGVECFSFLDGMFGI MVYDKRRGKIILTRDGVGEKPLYYAKCGRKFAFSTLIKPLKEYFGSFSLNPQALWDFFTF GFIPEPQSIYNEVKALKKGHYLVFDCQSLEYNEFEFWQKTLQRFSPIRQDQNVDLVGITK EIVTKSIQGRLMSDVPIGAFLSGGLDSSIVATLAQQSLGNLTTFNIAFLDNYDPYCGFAD ESEFAMLVAKNINSQHFTLKVNAKNYQNFLKSFIQDIDQPFGAISGIGVKMIARKARELG IKVLLSGDGADEYFGGYTWYPKLAFNDPKFITKEKPKGWHYYAFESEKKEFLNLDFFGDL DSRGYFPRGDSSPIAFIDFDREFYLPNEMMTKLDRMCMSESIEGRAIFVSPSIASFTQQL DYETLLRNGEKWLLKEAFKSILPQEILQREKHGFNVPIDYWIKNDWFNLLREILSKDSAL FHYGIIREDSCEKFIKILYSNERRVGNVGFYLIVLGMWLEI >gi|197325098|gb|DS990368.1| GENE 336 336495 - 337604 781 369 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417971|ref|ZP_03655977.1| ## NR: gi|224417971|ref|ZP_03655977.1| hypothetical protein HcanM9_01724 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0658 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0658 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 369 1 369 369 689 100.0 0 MKKVRENILILADLSSPLMKPRIMMLKDLPYDKYILHNANNIRLDEATLSDYTGFNVLQH PRIISLRMRYLYSFFYTLFLLLRLKPKLIVVHWASRLYQNLLLALWGKRVIVHTMGGDIN KEEDCYGKKKFFTGILLKNARIITGKTYVMKEISMSSFPFLNQDKIKILSWGVEDRFFEK LDSSQKKSEKMRLLGKNYQNVFFSIRTFKRIHFQKEIIKVFLENYKNDNDTCLIVSLLAQ EKKYYDECDREINFKENSNIIFVEINHKDMHKYLQISNAIISLKLFDGISQSIMEALCAE VFVIASDIKNHAMILSHQKNAYLINDFSELREAFLYCLMHKFKKIESPMLNANSQKQYYL QILKENFDV >gi|197325098|gb|DS990368.1| GENE 337 337597 - 338610 897 337 aa, chain + ## HITS:1 COG:no KEGG:CHU_3215 NR:ns ## KEGG: CHU_3215 # Name: not_defined # Def: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase # Organism: C.hutchinsonii # Pathway: not_defined # 44 320 29 302 320 212 41.0 2e-53 MYKGHLEFLVCPKCKGQLEVENAKGNEEFIYEGKLLCRKCGGGYEIIQGIPRFVPQNNYA DSFGFEWNKHKKTQYDSQSGVESSKKRFYEETRWVVNKNGEHCVILEAGCGSGRFTPYAL EIAQKDGVVISFDYSSAVEANALSNPPSKNLLLIQANIFELPIKEGIVDKCFCFGVLQHT PSAKNAIKSLVEVLKQGGEFVCDHYPFNKNTWFNTKYYFRPIAKRLPHKMLYNFGKKYID FMWPVFKFNRRMFSPKRANRLNWRLLIPDYTSQGLSEEKLKEWAYLDFFDMLSPWYDRPI RMKTLHRYLQEAGLSEVETNSGYNGWEGRGKKIRNKQ >gi|197325098|gb|DS990368.1| GENE 338 338607 - 339755 788 382 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417973|ref|ZP_03655979.1| ## NR: gi|224417973|ref|ZP_03655979.1| hypothetical protein HcanM9_01734 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 382 1 382 382 767 100.0 0 MMKKILIYGYGWVGESALEFFLSFDFYVRVYDDKLDFSRKSIFDENFISGELDLLEFDLV IIAVFENHKACRLKDKLLRVGVREDKIKNFRSQNYTKNMKYLNFEYFGSATELFLFIQKD NFVLDNFHQKLQNLIHKHYANKVNRGVLETRIAFDALEERSVYAKMYETAPKIWDSTYLN YPGFYIANSKSHDGDQDFYFVKKIDFEALASRDRKIKLVACMGNSALRVDYLSYEDTITG ILQKELGREFIVVNFGVTGSTLYEQFLLYNALVYPLKPDIVLTFFGGTEMRCAVSSCDVL IKRHKMVYVPQAWEESCKMAIQSKLPLYSEMAKISNAINHKVCVSDVVEAVNERLRQFER AVVSGGGGANFMPLFNPYCLAS >gi|197325098|gb|DS990368.1| GENE 339 339779 - 340027 220 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417974|ref|ZP_03655980.1| ## NR: gi|224417974|ref|ZP_03655980.1| hypothetical protein HcanM9_01739 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0661 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0661 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 82 1 82 82 136 100.0 5e-31 MRHKEEKLFNEIFSYYNKIIEQTPEFLTKLKKKAIDCAYLFDLNEVIKENSESLFTNFWI HCNKRGNEIVAQEVFKILSNKE >gi|197325098|gb|DS990368.1| GENE 340 340046 - 341737 1408 563 aa, chain + ## HITS:1 COG:PAB1605 KEGG:ns NR:ns ## COG: PAB1605 COG0367 # Protein_GI_number: 14521361 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Pyrococcus abyssi # 1 530 1 543 611 256 33.0 6e-68 MCSICGGNYPLELVKKASEAMKHRGPDFSGEFSDGIISLAHNRLSIIDLDSEANQPFTSP FCPHLVLVFNGEIYNYKELRQELKKQGIPFFTQSDTEVLLHAYVFLGEECIQRLNGDFAF CILDKRDDSLFLARDRMGNKPLFYALNQGKFFFASEIKAILEIGKFSFDLEEVSKWILFG NGSENKTIYQGIFSFPPASFGRFSNGELKIKKYWECVPCVDSTLGQKEALDRLEEILSDA VKIRLRSDVPMALCISGGVDSSILAHLAKRIGVECLYFGINFKETKQNEIQHMKQLQKDL GIDVSYITPNLECVKEDFRNLVQNQDEIFRSFSIYSQYLLFKNIAPFCKVVLGGQGADEL FGGYYHHVGRYIFAHYKEFENRIRIYGNEALREYGFGLKCSLDDSLKLKLFREDNQEGMR ILQENELPLPSMENLLGRFLLDFTQGLWLDTFQYNLPNLLRYEDRNAMRFGIENRTPFTD YRLVEFAFSLESSLKFAKGYSKYLLRLLLERLGSKELAWRADKVGFSAPEFVLAQTLGYN VSSLFGIRLAFFEVLKMRLKGEI >gi|197325098|gb|DS990368.1| GENE 341 341734 - 342813 1087 359 aa, chain + ## HITS:1 COG:MJ0665 KEGG:ns NR:ns ## COG: MJ0665 COG1817 # Protein_GI_number: 15668846 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in archaea # Organism: Methanococcus jannaschii # 2 353 6 336 341 106 27.0 9e-23 MIWIDVATPKYAMFFAGMIRELEKRGFEVLVTTRYAPNYTEAKEILELHQIPHIVLGEYG GATLLEKFEARIFRQKEILDLFKARGVPKVLICGAVVDSVQVAYGIGIPVVNIYDTPAFT KPKDSECPKELTAVARLTLPFSKIFFYPFIFPKELMLRFALDENQIQSYPFIDVALWINA IQKDSKNDFRTRYGLDTQKPTILIREEEYKAHYVKEQIPTIYEVIPLLKKEMDVNLVIMP RYEKERLKKDFGEIATILEEKLKPEEFYPFIDLFIGGGGTMNLESVCYGIPTISTRSIWL VHDQYLIKNKLMFWSQDCNEIVQIAKSMLGKRIDSQSYFVRGECSFDSMIERITKEILC >gi|197325098|gb|DS990368.1| GENE 342 342807 - 343871 1279 354 aa, chain + ## HITS:1 COG:TM0585 KEGG:ns NR:ns ## COG: TM0585 COG0673 # Protein_GI_number: 15643351 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Thermotoga maritima # 2 340 3 343 360 249 39.0 5e-66 MLGVALLGCGRIALRHAELLSRGEIEGAKLVCVCDIDESRSKQFGEKYQVPYFTSLDSMM ESCKKEINIVSILTPSGLHAKNTLEVAPYKKHIIVEKPMALTLEDADKMIEACDRNGIRL FVVKQNRYNLPVQKLREALEAGRFGKLVMGSVRVRWCRDNAYYRQDSWRGTWAMDGGVFT NQASHHIDLLEWMMGDVESVFAKSITALSEIETEDTGVAVLKFKNGALGVIEATTATRPK DLEGSISILGEFGSVEIGGFAVNEIKTWNFVESLESDKEVREKYSTNPPNVYGFGHKEYY LHVIDSIVHNKKALVDGLEGRKSLELIIAMYESIETGKEVFLRFQPKQCKLGHL >gi|197325098|gb|DS990368.1| GENE 343 343868 - 344503 304 211 aa, chain + ## HITS:1 COG:STM2299_1 KEGG:ns NR:ns ## COG: STM2299_1 COG0223 # Protein_GI_number: 16765626 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Salmonella typhimurium LT2 # 58 182 68 192 307 73 35.0 3e-13 MKKIVFLGAKKIGFECLAQLFARQKELDYEIIAVGTSHRGVEIKEFCKAHNIKEIQNLDD LLKLDFDLLFSVQYHLILQQEHINCAREIAFNLHLAPLPEYRGCNQFSFAILNEDSEFGV TLHKMDCGIDSGDIIFERRFAIPKDCFVGELVELANQEGLQLFCEKLPYLINGEYEFTPQ SDCVVLKREFHYRREIEALKCVDLYGGGGVN >gi|197325098|gb|DS990368.1| GENE 344 344500 - 345024 500 174 aa, chain + ## HITS:1 COG:TM0759 KEGG:ns NR:ns ## COG: TM0759 COG0110 # Protein_GI_number: 15643522 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Thermotoga maritima # 29 174 73 237 254 68 30.0 8e-12 MKKSLEQLQCRDLSHPIASLEGGSFALYQSQIREVKMGVNVKIVEPCNLYECELCDEVFV GPFVEIQRGVKVGAKSRIQSHSFICELVSIGESCFIGHGVMFINDLFQKGGPACDSALWR ETKIGNNVSIGSNATILPVDICDGVVIGAGSVVTKNITKKGIYAGNPARLIREI >gi|197325098|gb|DS990368.1| GENE 345 345025 - 345693 609 222 aa, chain + ## HITS:1 COG:SP0980 KEGG:ns NR:ns ## COG: SP0980 COG4122 # Protein_GI_number: 15900857 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 71 185 63 173 237 63 36.0 2e-10 MLEKAVLEIEKRREVLRGENSLIEVVDFGAGASHDKRSKEQMEAGVCVKIPLSNLAKIGV KKEKAECIYKIFSNLFPKTILELGTCCGFSSSYMSFFAPDSKIYTIEGSPNIATIARDNH QFFGLKNIFVFEGRFEVVLPKLLNEISPIDFAFIDGHHDKEATLRYFRQILPFMSKGGVM LFDDIAWSDGMKEAWREIVVSKQYMKFEELGEENWKMGVLWL >gi|197325098|gb|DS990368.1| GENE 346 345684 - 346784 1237 366 aa, chain + ## HITS:1 COG:slr1666 KEGG:ns NR:ns ## COG: slr1666 COG0399 # Protein_GI_number: 16332246 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Synechocystis # 1 365 1 382 385 261 37.0 2e-69 MVVKFLDLHKQYLGIKEEVDKAIFEVIEKSAFIGGDAVESFEEEFSEFIGGGVKTLGVGN GSDALEIAIEALNLPKDSEVLVPANTFAASAEAVVRNGLKIVFVDCGADYTLDIEDLESK ITPKTSAIMAVHLYGQSARMKEILELAKKHSLRVIEDCAQAHGARYNGQCVGSLGDIAAF SFYPGKNLGAYGDGGAIVSRDEALIKKCKCIARHGGLRKYEHEIVGRNSRLDGIQAAILR VKLKHLDSWNGRRREIAKLYMDGLSGIVGLPEVKKECECVWHLFVIRTQKRNELSQKLNQ MGIETGLHYPICLPNTQAFSNKPYVVESKTPKAKAWESEILSLPMGEHLSDVEVGSVIKA INEAIG >gi|197325098|gb|DS990368.1| GENE 347 346768 - 347292 529 174 aa, chain + ## HITS:1 COG:Cj1415c KEGG:ns NR:ns ## COG: Cj1415c COG0529 # Protein_GI_number: 15792733 # Func_class: P Inorganic ion transport and metabolism # Function: Adenylylsulfate kinase and related kinases # Organism: Campylobacter jejuni # 12 173 7 168 170 212 64.0 3e-55 MKLLVKDGKGLVIWLCGLAGSGKSTIGFGVYEELKKKNPNIVYLDGDELRVLLGHYDYDR NGRIEVALKRSKFAHFLSEQGLIVVVTTISMFKEIYDYNRKTLENYLEVYIQCDLEELKK RDQKGLYSAALKGQIKNVVGVDLSFDEPNAELVIENGVRNNLQQKIKKIVEFLN >gi|197325098|gb|DS990368.1| GENE 348 347373 - 348587 409 404 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417983|ref|ZP_03655989.1| ## NR: gi|224417983|ref|ZP_03655989.1| hypothetical protein HcanM9_01784 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0670 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0670 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 404 1 404 404 813 100.0 0 MIVRLFTLMIGGGGITLEDYKDDILQGGFVVNLANNKANGGNKKTIDILKKKLEKYGISY NEEAFCEYTLKMVSKITNDMKQFTGDIVGIELCGIASDKHIGYLDDYLLEHSRVNLLYIC ATKNSLENVLRKFKKSSFRNRVYAICFPLEHTEKLSFLKVLCKTSILNSKNNNVPTIYLG HALSDWSKVDMEKFYGDKIDYLSIGLKEFAPSNLKHIKIVESGYLGFDLVFKEINFDCQK DSILFAPYDEEEFFKFLPFMKQSLKKYRVIYRHRGFFEGKHLWCKTSEILKELRKNPNFS IDDSWSINPWSYSRSFAFVGGITTAVNTFPVLALCPSVSDNRQLNLNLGVRANFDKDDFF EIIEKIFCNQQQWRKRLLEYRELHFYHFGYASKIMGDFIISKFL >gi|197325098|gb|DS990368.1| GENE 349 348706 - 349485 801 259 aa, chain + ## HITS:1 COG:Cj1420c KEGG:ns NR:ns ## COG: Cj1420c COG0500 # Protein_GI_number: 15792738 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Campylobacter jejuni # 1 259 1 257 257 395 74.0 1e-110 MKQGDFTEVAKHYHNRPAYSEMLLEKLIRCINDENKKMQDLRVVEVGAGTGKLTKMLDDF GMQVLAVEPNDNMREEGIKYTQNTRIKWQKGSGEATGVESNFADWVIMASSFHWTDPSKS LPEFARILKNSAGGGGYFTAIWNPRNIIEGSVFDEIEKEIKHIIPELTRVSSGSQNAKKW EEVLISTGHFKDCFFMECDYVEIMDKSRYIGAWKSVNDIQAQAGEKRWKQILSMIESKIE SLEKIEIPYKIRAWSVKRA >gi|197325098|gb|DS990368.1| GENE 350 349530 - 350303 594 257 aa, chain + ## HITS:1 COG:Cj1419c KEGG:ns NR:ns ## COG: Cj1419c COG0500 # Protein_GI_number: 15792737 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Campylobacter jejuni # 1 257 1 253 253 429 79.0 1e-120 MKKIVEQVWDYTKHAKFYEYRPNYAPATIDMLVALMQKNQKKEIIKVADIGAGTGNLSIM LLERGCEVVSVEPNDAMREIGVQRTKDQKIEWVRATGIDSTLQSGVFDWVAFGSSFNVMD RVEALKESYRLLKPKSYFSCMWNHRDLNDPIQKIAEESIIEFVPNYTRGVRREDQRPIIE SHKELFDNIIYIEEDFYFHQSLENYINAWRSVKNPYWDLETKEGEELFGRIAQVLEQRLP KEFDIKYTTRCWSAKKV >gi|197325098|gb|DS990368.1| GENE 351 350287 - 351801 1107 504 aa, chain + ## HITS:1 COG:no KEGG:CFF8240_1621 NR:ns ## KEGG: CFF8240_1621 # Name: not_defined # Def: hypothetical protein # Organism: C.fetus # Pathway: not_defined # 8 502 4 468 481 133 29.0 2e-29 MQRKFKNIYFYPNGEDTQAALVILKNLQKKLGLEQNFLILDDAKVESSLVKNKEKILQNG VLWIIHQDKNIYEILEKKAKILPREFVFNGIEEIDRILFECFKKVEFSEIKKNTTNETFL FLSLTSYFVLQFYLTLKEKSFLLQELEVLSKKISAYFRDLFKIPSKCIGVAVTTFANNKH LGDIAKKLEEKGAKVIYVYYDQESYGKIPQSQKHKCILLPLQMSYMGNFFTIFEVFITCL MPLTSPSWGNKIIYVPHAFIDPIAALIQRKRPLDDFWFQKKMGINGYRIVPSLSNYRIYQ NKFKEYGFEEELVCGGYPSLDANIFEYDKLKEQSGMSILIAINHYASLKMIKDFLLEYQS FHNQQKVYFRPYPGNILRKESDEIAKEYAKFPWFIYDTTSKLEAQIMRECCCMIGDYSSL VYTFPLTTLKPAILLCQDKSILENNYLGIKFYNSILHKSAFSGKECLKKVQEILTEDKEV RANQIREYREKEVFNLGNSSELAS >gi|197325098|gb|DS990368.1| GENE 352 351941 - 354262 1981 773 aa, chain + ## HITS:1 COG:Cj1418c KEGG:ns NR:ns ## COG: Cj1418c COG0574 # Protein_GI_number: 15792736 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Campylobacter jejuni # 2 773 4 779 779 959 63.0 0 MLQFVSKAQNLKLLQGKLKTAKILPMVILTLEDFQRNKKEILGQILRLDSPKIIVRSSSK KEDSKENSNAGAFLSLANVSKDEKEIIEAIYKVADSMPDINDEILIQPMLENVRLCGVAT SADKDTLAPYYCIEYDESGATDTITDGSAKEKVSFFSHRDAPLLQDTTLQSIINLLKELE LLFGYDFLDVEFAVDKQGELYCLQVRPLVIQNKINFSHSLPIEALKRLQKRFLSLQRTIA NVYGKKAIFGVMPDWNPAEMIGLKPKRLALSLYKEIITDGIWAYQRDNYGYLNLRSHPLM HSFLGIPYIDVRLSFNSFIPKTLDSAIASKLVDFYLDTLKNKPYLHDKIEFDIVYSCYDL NTPKKLKKLLNNGFNDNETKRIEFSLLELTNKIINPKKGLYLKDLKKIKKLKKIYQNLEK ADLSIIDKIYWLIESCKRYGTLPFAGIARAGFVAMQMLNSLVEIGFFTQEEREAFLNSLK TISKQLSHKVTNLTLANKEEFLKDFGHLRAGTYSILSPRYDEAFEMYFEIQNTNSLSKSY DSTFELSEVRMQELNKLLCEHGLKINAKDFLSFLKCAIEGREYAKFEFTRLLSQALVLIG QLGDYYEITREDMAYLDIKSILNLYASLYSKKPRDRFLDEIRYHKEEYELTLALKLPPLI SESTEISSFFGARVMPNFITQKEVNAQIATQEDAEVEGKIILIKSADPGYDYLFAKKIAG LITCYGGANSHMAIRASELGLPAAIGVGEDAFNQYLRAKRIKLDCQSEQIICL >gi|197325098|gb|DS990368.1| GENE 353 354253 - 354873 490 206 aa, chain + ## HITS:1 COG:Cj1417c KEGG:ns NR:ns ## COG: Cj1417c COG2071 # Protein_GI_number: 15792735 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Campylobacter jejuni # 5 206 2 200 200 201 51.0 5e-52 MSLGFIGISQRIVENTDYFEIREALSLEWGEFFKQKLQNYIPLPLSYAISFQEYAQKLGG HLKGVILSGGNDLSCFNNDKISQIRDDYEGKIIDYCLRESLPLLGICRGAQRIASYFGAT LKLCNGHIGVHLVESGDKSYKVNSFHNYCIESLGDYLIKLAISKDFSIEAFKHIEQNIFG IMWHIERKEGMIDSSIFKEWKKSLKE >gi|197325098|gb|DS990368.1| GENE 354 354849 - 355352 275 167 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313141533|ref|ZP_07803726.1| ## NR: gi|313141533|ref|ZP_07803726.1| predicted protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 167 1 167 167 323 100.0 3e-87 MEKKSKGVMVKVLYAPSKREFSDDLHNNVACSFDVMVLETLLENNDLEVFYLPHAQSSKK VLEAIKSIFGDSIRWVKKLPKNIDVLVSDTSNRVFEHALSTHNPSILCLFGFNGIQYPPN DKYYSMVENFSYGVSSVRELREVFLKYDAIKQAKKEKIQEFFNGVLL >gi|197325098|gb|DS990368.1| GENE 355 355349 - 356455 992 368 aa, chain + ## HITS:1 COG:no KEGG:Arnit_2936 NR:ns ## KEGG: Arnit_2936 # Name: not_defined # Def: CDP-glycerol:poly(glycerophosphate)glycerophosph otransferase # Organism: A.nitrofigilis # Pathway: not_defined # 115 364 308 586 605 70 27.0 1e-10 MIEETIKQFIQTTKRTIESYLSKDRKNICVVSYYPTYRKQYGDLIACLKEKYNVITIVER ILNDEFESSGHHNVLFPWRIIENGQTYYLNVDIEGIDLVLTADQVGYENGKIDRTFLSTS AKRIYFPHSLVEATGVSEVVDYILVPSKIAMESFRKSFKKTKVKLLESGYPKLDKAIQTY TYQDTNTITYAPSLRYVGGDYASLNLFAGVENNLIETLLDSSDYNISYRAHPMNFQNNHS FYNLIKSKWNSEPRVSFDEKLGNDFGNISDFLVTDFSTTAFTFSLSTLRSSLFFAPLQLT THLADFIPAISVEGQIRSLKELREKIANKKGTEDSQRIKEFRDENVYNIGSSVDAILEQI DEILQGKL >gi|197325098|gb|DS990368.1| GENE 356 356494 - 357210 649 238 aa, chain + ## HITS:1 COG:Cj1416c KEGG:ns NR:ns ## COG: Cj1416c COG1213 # Protein_GI_number: 15792734 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar nucleotidyltransferases # Organism: Campylobacter jejuni # 1 238 15 251 253 290 61.0 2e-78 MPLTAHNPKCMVEYQGKKIIDYEIQALRQAGIIEIAVVGGYLQEVLRDYLSKTYALKEFF KNPNFDSTNMVATLFCARQWIESCIQHKEDLLISYADIIYSKEIVEKLKNTDVPFGIIVD KNWRELWEKRFDNPLEDVETLKIKENRVVELGKKPKDYSEIEGQYIGLFKFSYDFLPKVL EFYDELDRNLLYDGKDFANMYMTSFLQGLIDKYQNAVTIEIFGGWCEIDFKRDLEIKI >gi|197325098|gb|DS990368.1| GENE 357 357211 - 358056 961 281 aa, chain + ## HITS:1 COG:aq_337 KEGG:ns NR:ns ## COG: aq_337 COG1218 # Protein_GI_number: 15605852 # Func_class: P Inorganic ion transport and metabolism # Function: 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase # Organism: Aquifex aeolicus # 14 265 11 252 268 147 35.0 2e-35 MKNLLFQVALIAIEAGKIALRYYGKEEFFLKEDSSPITQADLESNAYITQALQKISPYAV CSEEAVLEYAKRKDLEYYWLIDPLDGTKDFLAKNGGWTINIALIHKNHPILGVVYAPCFD GLYMGLEGFGSYTIESQKLKNAIESHCVDEVFLDLNKIRLNGERNIADKELVACDSNFHS TESTQPPLKKYHLKVQKYGSSLKVCALAKGEADLYPRFNGTSEWDMAACDIVLREAGGVI LDCITKKPLLYNKESFRNNHFIAFSKSQIGGQIYRDLLEQE >gi|197325098|gb|DS990368.1| GENE 358 358117 - 360345 1989 742 aa, chain + ## HITS:1 COG:Cj1686c_1 KEGG:ns NR:ns ## COG: Cj1686c_1 COG0550 # Protein_GI_number: 15792989 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Campylobacter jejuni # 4 565 3 564 567 718 64.0 0 MSLKDLIIVESPTKAKTIKNFVGSNYEVIASKGHIRDLPKHSFGIKIDNQEFIPEYKIDE SHKNIVSELKKLAKDSKTIYIATDEDREGEAIGFHIATAIGKDPQKLPRIVFHEITKKAI LDSLKNPRHIDMDKVNAQQARRLLDRIVGYRLSPLIASKIQRGLSAGRVQSSALKIIVDR EKEILNFKPITYYSIDIAFKEQLESELLEFKGKKIQKLSLQDKAEALEMIQQLKQESFKV KEIENKKRKTATPPPFMTSTLQQSASSILGFSPSRTMQTAQKLYEGVMTHKGSMGVITYM RTDSLNIAKIAQDEAREFITKTYGKEYAPSKPKNYATKAKGAQEAHEAIRPTLVDFTPQI AAQYLKGDELKLYTLIYNRFLASQMSDAEFELQNIFIDSNSSLLKISGRKLIFDGFYRIL GNEDKDKLLPHLKVGEVLKLEKCDLSEHQTEPPARFSEASLIKTLESLGIGRPSTYAPTI SLLNSREYISIEKKQIKPQEIAFKVVELLEKHFLEIVDSKFTANLEEKLDEIAENKQDWQ KLLWEFYEPFIQKVNEGKTSIQSQKIALPTGENCPLCGKELIKRSGRFGEFVGCSGYPKC KYIKKEVEENAQEESYGVCEKCGKPMVKKRSRSGEFLACSGYPECKNTKSLNNSAPSAKK AVEGVKCPKCSGEILERMSRRGKFYGCANYPKCDFISTYEPTNVHCPKCNSLMAKRTYRK KAVLECIACKERIEEIQTTIKE >gi|197325098|gb|DS990368.1| GENE 359 360347 - 360751 394 134 aa, chain + ## HITS:1 COG:Cj0436 KEGG:ns NR:ns ## COG: Cj0436 COG5015 # Protein_GI_number: 15791803 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Campylobacter jejuni # 3 126 5 129 136 131 48.0 3e-31 MTQEILDFLDKNVTFLATKGTCGNPRVRPIKSALYKDEKLYFCTSNKKGMYKHMQNFSGV ELSAFDGENMWIRIRGEVKFDSNLAIKEAMFEKYPSLERIYQTPQNPDFVVFYLEKVSIK IQDFKGRDEVLTLA >gi|197325098|gb|DS990368.1| GENE 360 360767 - 361606 813 279 aa, chain + ## HITS:1 COG:jhp1298 KEGG:ns NR:ns ## COG: jhp1298 COG0502 # Protein_GI_number: 15612363 # Func_class: H Coenzyme transport and metabolism # Function: Biotin synthase and related enzymes # Organism: Helicobacter pylori J99 # 1 278 1 281 282 366 62.0 1e-101 MKEIFLCTISNVSSGSCAEDCAYCTQSAKYNADIDRYKFKSIEQIVFEAKEAAKNGALGF CLVTSGRNLDDKRVEYISRAARAIVNEGLHLHLIGCSGIADKDSLKELKEAGIASYNHNL ETSKNFFPQICTTHSFQERYETCENALEVGLGLCSGGIFGMGESWQDRLDLLHALQTLKP HSTPINFFIPNKALPLKQEVLSQEEALECVRLAREYLPDVRLMIAGGRERVFGENQKELF ECGINAVVLGDYLTTKGNTPKEEVLRIKSYGYGIATSCE >gi|197325098|gb|DS990368.1| GENE 361 361612 - 362454 759 280 aa, chain + ## HITS:1 COG:Cj1212c KEGG:ns NR:ns ## COG: Cj1212c COG1295 # Protein_GI_number: 15792536 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 19 267 7 251 268 139 39.0 8e-33 MYLKLLSRIKVESIPSLKILYGFLKGDLLYFAASLSFYTIFALLPMLLIVFSLVAALPDF KDYLESFKNLVITNFLPTYSDVFLDYMDSFLANSAKLGGMGLLYAFVTSILFFKNYQFIA GKIFHTKPRGFWDSLAVYWTCMTLFPVGILFSIYLSAKAYAYLDVLGYKDFMLWLFRLSP YLITWAIFFIFFKISANTQIDFKNTLISSLITALLWSFCKWGFVYYVFYNKAYLTLYGSL SILLFLFIWVYLSWAILLFGMKLSYVIGEVFCGERQKEVK >gi|197325098|gb|DS990368.1| GENE 362 362509 - 363834 1804 441 aa, chain + ## HITS:1 COG:jhp1383 KEGG:ns NR:ns ## COG: jhp1383 COG1253 # Protein_GI_number: 15612448 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Helicobacter pylori J99 # 4 434 5 434 441 509 62.0 1e-144 MEVDSILLSILALFLVLLNGFFVLSEFAIVKIRRSRLEELVKREVSGAKLALKITGKLDS YLSATQLGITLSSLGLGWIGEPAVARLLEVPFKYFIGDNPVLLHSVSFVIAFSFITLLHV VVGEIVPKSIAIAKAEKSVLLVARPLHIFWVVFYPVIKIFDFIAAVILHAIKIKPASEGE ESAHSEEELKIIVGESLKGGYLDTIENEIIQNAVSFSDTMAKEIMTPRKDMICLYDDNSY EENMQIVTTTKHTRYPYCKEGKDNIIGMVHLRDLLETMLSDNPSKELEKLVREMIIVPES ASISNILIQMNRRQIHTALVVDEYGGTAGLLTMEDILEEVIGDISDEHDKKSEDYHKIDE DTYSFDGMLDLERVADVLGITFEEDTEQVTIGGYVFNLLERMPVVGDVISDEFCEYEVLA TQGARIVRLKAKKKPFEMQEE >gi|197325098|gb|DS990368.1| GENE 363 363835 - 364020 164 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417999|ref|ZP_03656005.1| ## NR: gi|224417999|ref|ZP_03656005.1| hypothetical protein HcanM9_01864 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0685 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0685 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 61 1 61 61 68 100.0 2e-10 MIDFFFVGLQLLFIGLKLAGKIEWSWWLVLLPAILYLFFYLFLMVLIGGFLIGLGAALST I >gi|197325098|gb|DS990368.1| GENE 364 364032 - 364526 775 164 aa, chain + ## HITS:1 COG:Cj0702 KEGG:ns NR:ns ## COG: Cj0702 COG0041 # Protein_GI_number: 15792051 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Campylobacter jejuni # 1 164 1 164 164 173 64.0 1e-43 MEFIAILMGSKSDYEVMNECILVLKKFDVPYEVIISSAHRSPNRTKDYVKQAEQKGAKVF IAAAGMAAHLAGAVASMTTKPVIGVPLKGGALDGLDSLLSTVQMPSGMPVATVALGKTGA VNSAYLAMQILALNNAELEGKLREDRVMKAKNVELDSQDIEVIL >gi|197325098|gb|DS990368.1| GENE 365 364537 - 365022 588 161 aa, chain + ## HITS:1 COG:no KEGG:WS2120 NR:ns ## KEGG: WS2120 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 156 1 155 162 158 58.0 7e-38 METWVKIDEFASLANLTRERVLEMVASGELKSKQENGVFLIDAGSGTKAVVHTGSNAVMI DNSNVGVDNEFVEKTIGTILSLHEKVISAKEETITSVKSENQFLKDALFNTQEVYEDDKK TIAILREQLKAAQEEIEFLKRKYKMMWGKVINTKPKEGMDD >gi|197325098|gb|DS990368.1| GENE 366 365063 - 365965 795 300 aa, chain + ## HITS:1 COG:MK0812 KEGG:ns NR:ns ## COG: MK0812 COG1578 # Protein_GI_number: 20094248 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanopyrus kandleri AV19 # 14 289 15 287 304 115 29.0 1e-25 MRTAEVINFFQKEAINQIEQEILVNYQESVLGFFEKKGIILEKNREIPPTLLAVVLYDRI SKLTKNPTPYWRIKQQSIQKARLLKESLKEKLKTISKENQLEFGIYCAVLGNVIDYGAEY AFNLEEECQKIFDTRFAYFHINALKQQLQKAKKIIYIGDNAGENELDEILIQIFKAHYPQ LQIFYFVRGAEIINDITLDDLHQSDSELFKICEVRDSGVPSPGFIYELANIESQRLFREA DLVFAKGMGNFESLEKQAQDDSRIFFLFKIKCNVVADYLNQKLGEFVLLHSHSLKKGLVC >gi|197325098|gb|DS990368.1| GENE 367 365959 - 367260 1738 433 aa, chain + ## HITS:1 COG:jhp0695 KEGG:ns NR:ns ## COG: jhp0695 COG2056 # Protein_GI_number: 15611762 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Helicobacter pylori J99 # 3 433 9 436 437 437 55.0 1e-122 MLTNPVVVSIFVMSVLCLARLNVLLAILVSALVAGIVAGIGFEESIKILISGMAGNLEIA LSYILLGALASAIARTNLTPIFVYYIANFIQNRRLMFCLFIAFFACFSQNLIPVHIAFIP ILIPPLLPLMNRLKIDRRAVACALTFGLKAPYVSFSVGYGLLFHTILQKQLEQNGINVTL EQISSVMWIGGASMLVGLLLAIFVFYRKPREYQNTFLEENVLKHLENPKMSRQDFGVLLG AIVAFVVQILEGSLPLGGIAGLFVMIVFGAIKWDNIDNVIEDGFKMMAFIAFVMLIAAGY GNILKETGAIESLIETASSLSGGQLGGAMMMLLVGLLVTMGIGTSFGTLPIIATIYCPLA LKLGFSYEAIILLVGIAGALGDAGSPASDSTLGPTSGLNADGQHNHIWDTCVPTFLVYNI PLMVGGVIGAMLL >gi|197325098|gb|DS990368.1| GENE 368 367277 - 368218 1176 313 aa, chain + ## HITS:1 COG:Cj1443c_1 KEGG:ns NR:ns ## COG: Cj1443c_1 COG0794 # Protein_GI_number: 15792761 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Campylobacter jejuni # 6 206 5 205 205 286 70.0 4e-77 MQDFTQVAKEVFDIESEAILGLKEHLNQDFNGVIECILKLKGHCVITGMGKSGHIAAKIA ATLASTGTPSFFLHPGEALHGDLGMLTKEDAVIAISNSGESEEVLRIIPLIKKRAIPLIV MSGNPQSTLAKEGQYFLNIAVKREACPLQLAPTSSTTANLAMGDAIAVALMKARGFKPEN FAMFHPGGSLGRKLLTQVKDIMVTQDLPIVSPQTSFKDLIAEMTSKRLGVCLVLENHRLQ GIITDGDLRRTLMENKFEVCAEEIMTKQPKVIQSNAMATQAEAIMMESKIKELVVMDGNE VVGIVQLYEVGRI >gi|197325098|gb|DS990368.1| GENE 369 368359 - 369825 1190 488 aa, chain + ## HITS:1 COG:HP0144 KEGG:ns NR:ns ## COG: HP0144 COG3278 # Protein_GI_number: 15644773 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cbb3-type cytochrome oxidase, subunit 1 # Organism: Helicobacter pylori 26695 # 1 487 1 487 488 721 77.0 0 MQSNSALEYDYSIAKLFLFATIVFGIVGLLLGVIVAFQMAFPNLNYLAGEFGTFGRLRPL HTNGIIYGFTLSGIWAAWYYLGQRVLKISYNEHPFLKFIGHLHFWLYILLMVLAVVSLFA GLTQSKEYAELVWPLDLLVVVVWVLWGVSLFGSMGVRREQTIYISLWYFIATFVAISALY IFNNLSVPTYLISGVGSFWNSISLYAGTNDAMVQWWFGHNAVAFVFTSGIIGVIYYFLPK ESGQPIFSYKLTLFSFWGLMFVYIWAGSHHLIYSTVPDWMQTMGSIFSIVLILPSWGTAV NMLLTMKGQWHQLKESPLIKFLILASTFYMLSTLEGPIQSIKSVNALAHFTDWIIGHVHD GVLGWVGFTLIAACYHMTPRLFKREIYSKKLMDIQFWIQTIAIILYFSSMWIAGITQGMM WRATDEFGNLAYSFIDTVTVLFPYYTIRAIGGAMYLIGFIIFAYNIIMTIVASKELEKEP NYATPMAA >gi|197325098|gb|DS990368.1| GENE 370 369837 - 370520 952 227 aa, chain + ## HITS:1 COG:jhp0133 KEGG:ns NR:ns ## COG: jhp0133 COG2993 # Protein_GI_number: 15611203 # Func_class: C Energy production and conversion # Function: Cbb3-type cytochrome oxidase, cytochrome c subunit # Organism: Helicobacter pylori J99 # 1 224 1 224 232 347 73.0 9e-96 MFHWLEKNPFFFTVVFLLVFSIAGLVEILPDFAKASRPTENLKPYTLLETAGRQIYIAEG CNVCHSQLIRPFKAETDRYGAYSLSGEYAYDRPFLWGSKRTGPDLHRVGDYRTTDWHEEH MLNPPSIVPGSIMPAYPHLYQKNVDIDTAYAEAYTQKVVFAVPYDTEGNPKLGDLESARA EILAEAKILAEDMKDPEVKAALERGEIKQIVALIAYLNSLGQKRRAN >gi|197325098|gb|DS990368.1| GENE 371 370523 - 370741 91 72 aa, chain + ## HITS:1 COG:HP0146 KEGG:ns NR:ns ## COG: HP0146 COG4736 # Protein_GI_number: 15644775 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cbb3-type cytochrome oxidase, subunit 3 # Organism: Helicobacter pylori 26695 # 1 66 2 64 73 58 46.0 3e-09 MDYETIKIIQGYAYWFITLLLVVLLYGYIYHLYKSQRSGKIDYEKYARLALDDGLNDKLI EERSNKDKKKES >gi|197325098|gb|DS990368.1| GENE 372 370742 - 370912 190 56 aa, chain + ## HITS:1 COG:no KEGG:WS0181 NR:ns ## KEGG: WS0181 # Name: ccoP # Def: CB-type cytochrome c oxidase subunit III (EC:1.9.3.1) # Organism: W.succinogenes # Pathway: Oxidative phosphorylation [PATH:wsu00190]; Metabolic pathways [PATH:wsu01100] # 1 53 1 53 285 83 79.0 2e-15 MEWLNLGDSVNQLALLGAIVILALTIFVVGSYIKKMKSSKAEGELSSEEWDGIPPP >gi|197325098|gb|DS990368.1| GENE 373 370888 - 371622 868 244 aa, chain + ## HITS:1 COG:HP0147 KEGG:ns NR:ns ## COG: HP0147 COG2010 # Protein_GI_number: 15644776 # Func_class: C Energy production and conversion # Function: Cytochrome c, mono- and diheme variants # Organism: Helicobacter pylori 26695 # 9 235 58 280 286 270 54.0 1e-72 MGWNPPPVNDIPIGWGVTYLVLIIWALWYWFIGYPLNSYSQIGQYNEEVKAYNAKFEEQW QNIDEATLVKMGQNLFLVQCSQCHGITTEGMNGTAANLAEWGREEGIITTIKQGSKGLGY LLGDMLPISEVAPGVLDTEEAQKAVAAYVMAEISEAKKTKYPELIAKGKELYTAATCNAC HGDDGKGMGGMAPDLSKYGTTTFVAEVLDKGKKGHIGIMPSFKTQMLTDIQKEALGHFIY SDKN >gi|197325098|gb|DS990368.1| GENE 374 371632 - 371835 343 67 aa, chain + ## HITS:1 COG:no KEGG:HH1260 NR:ns ## KEGG: HH1260 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 66 1 66 66 68 54.0 1e-10 MNGLFGINGLGGYIVAVALLLAIVFGLGYAAVVTQKAEANNPYVIENPNSIQMKSVENAE HFQNAEE >gi|197325098|gb|DS990368.1| GENE 375 371839 - 371949 97 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVKYSSLEKILFIAHIVIIIVSIAVVFIPDMLLFVG >gi|197325098|gb|DS990368.1| GENE 376 371951 - 372532 604 193 aa, chain + ## HITS:1 COG:no KEGG:WS0184 NR:ns ## KEGG: WS0184 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 18 193 30 205 205 174 49.0 2e-42 MLQVFKIGVLSLFCFVFSFAKPFVLENENQLVEKTIGFIEILSSEVYEKTGVRMYIVALE DLGEMNLQEKESFYIDNLQNPYVLLFFSKKDQKIDIITSQEVKKMFDKNDVYWDYIVPLI PNSTKELTSERISAFLLNGFVDMADRIAEFHNVKLEHSFPTQNKGIQIAVRTALYGMLFV LLVLFVFVYLRRK >gi|197325098|gb|DS990368.1| GENE 377 372532 - 373017 723 161 aa, chain + ## HITS:1 COG:no KEGG:WS0185 NR:ns ## KEGG: WS0185 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 3 149 5 151 163 107 40.0 1e-22 MNKNYWPIGIFLLVMVVIGLIVLTIKTALNNPVEMKAMCGMDSQYVDENINEITQKRQAF LKQYAVRFEGPKEQSLKDFKMAFIKIKDLKSQKLPTNAKISFFLTRPNTIQEDKALGEGE FVEGIYQSPFFAVDKQGRWQVEAYVEIGEDSICLMQEYLVK >gi|197325098|gb|DS990368.1| GENE 378 373060 - 373590 489 176 aa, chain + ## HITS:1 COG:no KEGG:Bmur_0241 NR:ns ## KEGG: Bmur_0241 # Name: not_defined # Def: hypothetical protein # Organism: B.murdochii # Pathway: not_defined # 1 176 1 176 176 64 27.0 1e-09 MKNFSYAVWLLFSVVMIVSGVFGCFMPLETFMGLAVLLPVFLLVGGLSNVIYYFYARRVS GAEFILIDGLLNLLFAWIFFYNGIDFTSQVIVIFVAFMILFKGILGIGYALKLKKLGLEW LIVFIFAFLNIIVAMIFIVNPTIGSVTIGFMIALMVLFFGIISFWFGLSSKKLFDL >gi|197325098|gb|DS990368.1| GENE 379 373625 - 374620 922 331 aa, chain + ## HITS:1 COG:SAP008 KEGG:ns NR:ns ## COG: SAP008 COG0604 # Protein_GI_number: 16119208 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Staphylococcus aureus N315 # 3 328 2 323 323 288 45.0 8e-78 MKFKAICVDMQGENLIHAIKDITIDDLSDGDVIIKVKYSSINYKDMLAFKKNGGVIRKYP MIPGIDLCGEIVESKNPSYSIGQKVLATGFGMGVSHTGGYAQYARLQSSWIMPLPNGLSL KDSMIVGTAGFTAALSIQSLQQAGMHKDTQPTIAVTGATGGVGTMAIALLKAKGYDNIIA ITSKNDQSPMLKSLGASEIVSPKDIIKDDNKPLQSQCFHYVIDCVGGALAASLLTQISYG GAMSVCGNASGIALNTNILPFILRGIQLVGIDSVAYPSQKRSKIWYEISQAMAFIRKIPI TEVTLETLAHKLDSIQHATNIGRNIVSINNQ >gi|197325098|gb|DS990368.1| GENE 380 374683 - 376122 1289 479 aa, chain + ## HITS:1 COG:jhp1400 KEGG:ns NR:ns ## COG: jhp1400 COG1748 # Protein_GI_number: 15612465 # Func_class: E Amino acid transport and metabolism # Function: Saccharopine dehydrogenase and related proteins # Organism: Helicobacter pylori J99 # 1 464 1 398 399 553 57.0 1e-157 MACVLQIGAGGVGGVVAHKMAMNREVFSRIILASRTLDKCKVIADSIKQKGLGEIEIDCV DADSVESMVALIEKYKPKLVVNVALPYQDLSIMEACLRTKTHYLDTANYEHPDSAHFEYK EQWAYDTRYKEAGIFGLLGSGFDPGVTNVFCAYAQKHYFDEIHSIDILDCNAGDHGYAFA TNFNPEINLREVSSKARFWSKDNDLSKNTDLKKDTIYRKFEREEKHFSLEANTQDLKNED YFGGQWQDIAPLDLMKEWEYPEVGVKNSYLLYHEELESLVRNIKGLKRIRFFMTFGESYL THMKCLENVGLLRVDEIEHNGQKIVPIQALKTLLPDPVSLAPRTKGQTHIGCYIKGIKDG KERTIYIYNICDHEACYKEVNAQGVSYTTGVPAMIGAKLILEGKWGIGAAKIPNNADNSD MPKGGEYQGVDSNNGSGVWNMEQNDPDPFMAELNKQGLPYVVCEIDSKGERKVLEDGRK >gi|197325098|gb|DS990368.1| GENE 381 376202 - 378781 2595 859 aa, chain + ## HITS:1 COG:HP1369m KEGG:ns NR:ns ## COG: HP1369m COG2189 # Protein_GI_number: 15646208 # Func_class: L Replication, recombination and repair # Function: Adenine specific DNA methylase Mod # Organism: Helicobacter pylori 26695 # 7 836 8 794 809 459 39.0 1e-128 MDYKQAFFSQLESMYLGVQIENTQNLFNTDKIQKSGFINLLKIKSQYFKTIKEKLEKEEV KYPIYNKLYNFFGSYLNETGTPFFYDTPLHKNIYARVYTNSKDTSLFYKTQNLYYVKSDV IYHNAEIKSEDSNYTFIFDTSYFTPNSDNAKNKAIFKFKIDEEIRIYVLNNKEELQDLPN VFKQNSSDLSDEFIKALKDKQIRLQEEEIKKILYAYKKQNEIDFFIHKNARAFLQEQFNL WMFKYVVDDITDWSKEKIDELNQLKKIAFRIIDLIADFEDELKAIWCKPKFAKNVHYVFS LDIISNHARDSEQILESIFQDTGFKQQIKEWQELKLIDEHFEIKNINDEQYKFLPLDTKY LSEENYYKLLGAFDNLDEILSGELIKSDNFQALNSLMPKYQDKIDLIYIDPPYNTGGDGF VYTDKFNHSSWLTMMNNRLDLAKEFLKNSGSIFISIDDNEQARLKILCDEMFGEENFVAN IVWKRKRGRDNSAKYFSKTHEYCIVYGKDTCNLNFNLLEIDNKTKKQYKNPDSDKRGEYR LLACWARGTQGGVEYDFVSKCGKYFSKRLWLFSKDNLIKMDNDDKLVIKGDNIYRKLFLS EHSGQVLETIWDDVSNAANAADEMKSLFNSIVFDTPKPEPYLKRILEIASNASFCYSERS VAIEEFKNIDSKIDVSLTLNTISNGNIVLDFFAGSGTTLATAHKLGRKWLGVEMGEHFYQ VVIPRMKKVIGGFASGISKEVEFKGGGAFRYYELESYEESLEQCEYVLDKDSLIDYRKSR KLIKGLKKGEKICLDMSKYNKSFDIFTTMSNLLGLKIKNIFLDENGIQSCKFENDDIVNL ETIDLIKYPKLRNLIWWGE >gi|197325098|gb|DS990368.1| GENE 382 378783 - 380306 858 507 aa, chain + ## HITS:1 COG:no KEGG:C8J_0266 NR:ns ## KEGG: C8J_0266 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_81116 # Pathway: not_defined # 1 507 1 495 495 661 78.0 0 MKNIAILVGNSEYQNLGKLDFCKKDINSIQKILDLNKKFEIHIFENYQSEQLKSELSKII RELEKSKINELLFYYTGHGVFKEQFYYLPINFTDKQFETTSLSNNELDDMLKSLDTEMVI KIIDACQSGQQYIKESDQMSVKKSLTQHSFKKCYFFFSSMNNQSSMGDDRGSYFTNAIIE SILTHKTDSIRYTDVQSYIVDYFSSRSESQTPFFVNQSNATEIFLDKLRSIQSFFENNNP IINDDEGVNQEIENDKIDIIEKLKALSKKYISKDMAQENIEYIFDENKLNDIFNDDIRLI YDIKIDKCNDYNIISNINELYNEIEKNKKNLFINLGYKQESYTTTEWVPKKKKPQNAYEA MFGQLRMSELSGHISLFKKEEYEEKEVEKYRDIVNSINVTDDILPIGVAISLNPKEDIRN INKYVITIINFHNDLDIIFYSNITKYYKNNWCNWEKINVEDWIKSKVSFCDKDKILEKIQ IIVENYNQKISDDILNILKQDDLRIRE >gi|197325098|gb|DS990368.1| GENE 383 380313 - 381308 960 331 aa, chain + ## HITS:1 COG:STM3755 KEGG:ns NR:ns ## COG: STM3755 COG3943 # Protein_GI_number: 16767039 # Func_class: R General function prediction only # Function: Virulence protein # Organism: Salmonella typhimurium LT2 # 6 321 15 333 345 241 40.0 2e-63 MQNNIILYTTQDKKIKVELYELGDSVYLNQESLAKLFDTSKSSISEHITNILKDGELQED SVVRIFRITASDNKQYNVKFYSLEMILAIGFRVRSKRGVQFRIWANEHLKNYLQKGFLID SDRLKNPNGRTDYFDELLEQIRDIRASEKRFYQKLKDLFALCVDYDSSDKATQMFFANTQ NKLLYAVTKQTAAEIIAKRADSSKPNMGLTSWKGSVVRKEDILIAKNYLSKDELDSLNRL VNVFLESAELRVKDNKTLTMDFWRENVDALLSFQGKEILKDNGSIAKKAMQKIVYKQYEI FNEKRKEEARIKADLEDEKNLEETYKALKER >gi|197325098|gb|DS990368.1| GENE 384 381308 - 383785 2112 825 aa, chain + ## HITS:1 COG:no KEGG:C8J_0265 NR:ns ## KEGG: C8J_0265 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_81116 # Pathway: not_defined # 1 822 1 814 947 747 54.0 0 MAKAKQTADIKQHLLLSEICNDKRMQHKGIYERYDLQSFSADMSLQEYQIASVQNAMIAL DCYMCYKDSEYRQNRGAKLYRIYQEKYKDFRLKESEINRASFWMATGSGKTIVMIKLLSL LGKAMRDKIISNKPIMLLAPNDTILKQFKHNITKYNNYNGDSLSVRELKEYESVGNTSLL EETIVFIARSDLLDCKENVGKDKNAKRLDYKNYCNDCGWYILLDEAHKGDSKDSIRKSYI NELACGDKQKDYEGFSKGFIFNFSATFSDEIDFLTCAFNYNLEKFNRDGYGKNIALLDSN LKSFGNENDENERITRIIEGFILFSAMKQSKEKLLEKAKSLGVADIKYHNPLIIAVSDKV NTQDAGIKLYFEAILQILKEDRDIQEIANNLYEKLQYQELYFAKNALSDEFKECVKNVDS KSVRKYIFYASEPSSLECLRANDKELAFKSKNANEPFMLLNIGETKKWEKEHLLELGVES FKDLQKSYFKDINSTDSSINIMLGSKVFSEGWDSNRVNLIYFINIGSKNANKYVLQTIGR GVRIEPFAHVRKRMQYNQLEYATKEALSSLSCGIETLFVLASDTEAIKFILGKIESFITQ YPIKGFKKTNILSPLPTPKYKEIQSKDKNYRIDKTEAKNLRAYIESFDEDVLVLSKCVIH KECSYETLQEIQKFLHNNSTRIQSSNGDMQKFDKNTTISRIDRILHATNRELQEFVDLSD EINHYQKFQTTLGQDFANEISEIIKNILNAKSEEELKADFESGKINIDEFAKNLKSNAKK CNIKDYAISAELKEHYCNPLIFSNKDDRNTEINFAISQKSERLAS >gi|197325098|gb|DS990368.1| GENE 385 384422 - 385075 727 217 aa, chain + ## HITS:1 COG:BS_ydeN KEGG:ns NR:ns ## COG: BS_ydeN COG3545 # Protein_GI_number: 16077593 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha/beta hydrolase fold # Organism: Bacillus subtilis # 26 211 3 184 190 142 39.0 3e-34 MLRVISKQFSIVLVFLIALSVNVFGKDVYIIHGYKSTSNYGWFNAVAQKLSKEGYKVNIL NLPNADKPVLKEWLGAMQKEIQKIDRDTYFITHSLGGIATLHFLSETLKSQDKGFQVGGV VLVSPFDEELKKLPIFGSFTDKKPNYQILKNVIKNRVVISAKDDAIVPTDLSYKLAKSLD ADFIQTQKGGHFMESEGYTDLPLVIEVFQNFPAESKK >gi|197325098|gb|DS990368.1| GENE 386 385165 - 385896 770 243 aa, chain + ## HITS:1 COG:FN0800 KEGG:ns NR:ns ## COG: FN0800 COG0834 # Protein_GI_number: 19704135 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Fusobacterium nucleatum # 29 242 16 229 230 211 53.0 1e-54 MKNFLKIFSIILALIAFFGCEKKEEKSKVYVGMNADFAPFEYREGKNIVGFDVDLMREIA KISGIEVEFMDIQFDGLLPALELGKIDMIISGMTVTENRKKFVNFSDSYFNSTQVILVNS ENQNIGNFSDLSGKVVGVALGFTGDLVVSKLPNVSVQKFNTASDLILALKSHKVEAVVLD YETAKNYAAHNQDLKLIQSDAANEEYAIAMRKDEVELLQKVNEALKKIKENGTYDALIAK YFD >gi|197325098|gb|DS990368.1| GENE 387 385912 - 386589 884 225 aa, chain + ## HITS:1 COG:FN0802 KEGG:ns NR:ns ## COG: FN0802 COG0765 # Protein_GI_number: 19704137 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Fusobacterium nucleatum # 2 225 1 236 236 254 66.0 1e-67 MLEYLEILKEVFINENRYWYLVEGLGFSIATTALSALIGIALGILIALMQLSTWKVLSKL AFAYVYIIRGTPVVVQLMIWANIVFVGALRDMPILLIAAIAFGINSGAYVAEIIRAGIAG LDKGQMEAARALGMGYALSMKEIIIPQAIKRILPPLVSEFIALLKETSIVGFIGGVDLLR AANIITSQTYRAIEPLLAVGIIYLILTSIFAMLMRKVEKRLKESD >gi|197325098|gb|DS990368.1| GENE 388 386582 - 387310 579 242 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 227 46 7e-58 MIKXXXXHKKFGEIEVLKGINVEVSKGEVIAIIGPSGSGKSTFLRCINRMEDPSCGQIII DGQNIMDKSVDINLVRQKLGMVFQHFNLFPHKKVIENITLAPMKLKKIPKEMAYKKAIDL LNKVGLVSKKDVYPNKLSGGQKQRIAIARALAMEPEIMLFDEPTSSLDPEMIKEVLDVMK DLAKEGMTMMIVTHEMGFAKNVASRILFMSEGKIIEDESPNKFFTNPKNQRVKDFLHKVL DK >gi|197325098|gb|DS990368.1| GENE 389 387368 - 389320 1623 650 aa, chain - ## HITS:1 COG:Cj0586 KEGG:ns NR:ns ## COG: Cj0586 COG0272 # Protein_GI_number: 15791946 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Campylobacter jejuni # 1 647 1 647 647 678 53.0 0 MSYDSYLEAIKTLNLWAKHYYILDDPIASDEEYDALYHQIKEFEANNPTQISKDSPTQRV GDRILESFNKSEHIERMWSLDDIFNTQELQDWINRVSKDENLNFTIDPKFDGASLNLLYE NGILQKATTRGDGFIGEEVTQNAKTIPSIPLSIPYTDKIEIRGECVIAKDDFEAINQERL ENGEALFANPRNAAAGSLRQLDSKITSKRKLQFIPWGVGFCQINEESFFALMEKIRSFGF IASPFSKLCSNLQAIEDSYQNLISKRDSYPITLDGMVIRVDNIPLQKSLGFTIKAPRFAC AYKFPAIEKKAKILDIVLQVGRTGVITPVAILEPVMIEGAKVSRATLHNFDEIKKKDILI NDSVILIRSGDVIPKIIKSLPTLRDGTQKQCKMPTHCPICNSELLIEEKLIKCQNLNCKA RVKNSLIHFISKKALNIDGLGKRIIDLLFELGKITKIEDIFSLQYEDLEGLEGFKDKKIH NLLNAIKQAKGIDLWRFINALGIEHIGEGASKKLANTFGNDFYHKSFEDFVVLDGFGEEM ANSLVEFCHVNQERINHLLAILQPKCNQSTTNANLSNQTFVITGTLSQKREVYQEILESL GAKVSSSVSKKTNFLLCGEEAGSKLTKAQELGVKVISEEDFWNLIQETKK >gi|197325098|gb|DS990368.1| GENE 390 389317 - 389799 645 160 aa, chain - ## HITS:1 COG:Cj1198 KEGG:ns NR:ns ## COG: Cj1198 COG1854 # Protein_GI_number: 15792522 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Campylobacter jejuni # 1 158 1 161 164 235 70.0 3e-62 MPLLDSFKVDHKKMPAPAVRLGKVMHTPKGDEICVFDLRFCKPNVEILSQEGIHTLEHLF AGFMREHLNSDKVEIIDISPMGCRTGFYMSLIGKPSPEAVKNAWEASMKDILEVNEIPEA NELQCGTYKMHSLDAAKEIARDTLNKGIGIMDNESLKLNL >gi|197325098|gb|DS990368.1| GENE 391 389861 - 390862 417 333 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|46129221|ref|ZP_00155777.2| COG1194: A/G-specific DNA glycosylase [Haemophilus influenzae R2846] # 1 305 6 324 378 165 32 5e-39 TMNLPLLHSSILLWYEKKGRKSLPWRDKTSKNRAYRVLVSEIMLQQTQVKTILERFYFPF LEKFPTLETLSKAKEEEVLLQWRGLGYYTRARNLLKCAKICCESHKGILPKDIESLQKLP GIGRYTAGAIACFGYDRAVSFVDSNIKRILTRFFALQSPSPKLLESKAKTILNTQEPFNH NQALLDIGATLCTPKNPKCTQCPLQPFCQGKENPTFYTPTKKTALLKQTLEIGIFIQDSK FALTKSQTKLYYNLYNFPLISPPKSHQTNKLGILKHAYTKYNLTLHLYSLQSQELLQQTQ QKIEFFTQEELKNLPISSMTLKILDFLKKSTIN >gi|197325098|gb|DS990368.1| GENE 392 390866 - 391864 960 332 aa, chain - ## HITS:1 COG:alr2526 KEGG:ns NR:ns ## COG: alr2526 COG2141 # Protein_GI_number: 17230018 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Nostoc sp. PCC 7120 # 1 328 1 329 333 165 30.0 9e-41 MRSGIFTLMENWHNNEAEAILNSLEIIKYCDSLGLDEAWIGEHHFNNFTLCSATTTLISA ALAQTQNIKIGSAAILLPHYHPIQIAEKIATLDLLSKGRFLFGFARGAFPIFNIDRGNNP ENNREIMLENAQIVHQLLFKEQVNFSGNFFEINNVSIRPHPRGLIPFYVASDNDETLQKV ATLGYNFLGSLTLKENRAQQIHQIFKNNHPKKYEFTLTRAFYVDDNREVAEEKAQMGVDI FTQCMLRANESNPTFESIIKTSDYEEFRAEFFNKDKILETMIVGTPSDCIEQILEIKKQY MPDSLALKLLSPSLEDSKNILKTYKETILPNL >gi|197325098|gb|DS990368.1| GENE 393 391995 - 393092 1459 365 aa, chain - ## HITS:1 COG:Cj1548c KEGG:ns NR:ns ## COG: Cj1548c COG1064 # Protein_GI_number: 15792856 # Func_class: R General function prediction only # Function: Zn-dependent alcohol dehydrogenases # Organism: Campylobacter jejuni # 9 359 4 355 358 509 70.0 1e-144 MLLDSNLNEIKEGKRITAKGYAVQHKDDTFKPFEFSRHALGESDILIEILYAGICHSDIH SARSEWHKGIYPMVPGHEIAGRVVAVGSKVSKFKVGDYAGVGCMVNSCGECEACKASNEQ YCERGMVATYDCKDYCHNDEPTYGGYSNNIVVSEKFAVTVPQDAPLEKVAPLLCAGITTY APLKFSKVKAGDKVAVAGFGGLGMMALKYAKQMGAEVFIFARNKNKEQDALKLGATKLYD TTDPKVVTERFDLIISTIPTPYDITAYLKLLKLGGEMGIVGLPPSEVDPKIGAQGLIFNA HKKVYGSLIGGMKETQEMLDFSLKHKIYPETEIIAANQINEAYENLTTGKAKFRYVIDMK TLEDN >gi|197325098|gb|DS990368.1| GENE 394 394674 - 396314 1908 546 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253827363|ref|ZP_04870248.1| ## NR: gi|253827363|ref|ZP_04870248.1| vacuolating cytotoxin precursor [Helicobacter canadensis MIT 98-5491] vacuolating cytotoxin precursor [Helicobacter canadensis MIT 98-5491] # 1 546 1 546 921 929 100.0 0 MKISIAASRVLTSLGVVAALSSSAMAASGNQNNTGSSIQTITTASVIDSTTFKNNFKENV KGNWQFNNVNADLTLGFDATQIRSETNTLQNLDITANKVTITEPIGGYYPDEISNAVPDI GGISPSGQAFSFNINAKQVIFDGSLVGIYKDSNIVGDATFQNNALLSVIGHDLNIKGNAN FLGNDSDVHLLQLGKVNVEKNLTMANSHFQFNAGAQTATQNGTLPSVDSNQPDYYNSILS TWNFTDWGIYVNQEANITNSKFGFFSADLPLGQMNIIHADKFNNDVLTSNEIGTIYYFKY ISSLLTKPTILKPYTFVVEITNTNSLDGVTYTLNLSEDGKTLYINGQLSEDFAKDDLTSL KNITTSLIKTEQGYITKAKEQLNTIQWNLETKKGMLDSQKVGLENTIKVAEEQVKKLNDQ LVAATDVAKKEEIQKQIDTENDKIATNRKLLNEATNELNATTTELKAIADAMTDLTYRYT NLTENAGKINTATETNIKDLMLQTLAPKINQGDYSLADEILKITKIRTDNILFGGILFDM NNKLTS >gi|197325098|gb|DS990368.1| GENE 395 396620 - 397840 1149 406 aa, chain - ## HITS:1 COG:aq_030 KEGG:ns NR:ns ## COG: aq_030 COG0303 # Protein_GI_number: 15605633 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Aquifex aeolicus # 16 406 15 402 402 233 34.0 6e-61 MQEKISYTQAKEILNLQNIFPKGIERVFLHESLNRILSQDIFAPSDMPALNLSNMDGYAI YSVMAKNANESFEILQENPAGNKEILELPTNKPCAIKTFTGAAIPKNADMLVPIEWVEVK DNRLIIKQIPKIGEFIRKKGDNYKKGEKLLSKGTKINSHHIGLLASLNQVFVEVYERPKV GILVNGNEIVELGENSDLPNSIYNTNGHLLYAKILENGGIPKLYPILKDNKEQIQSCLQT ALSECDLILSTGGASVGDYDFIRQISQQQEEQVVFRGVRIKPGQHILYAHFGGKQFFGLP GFPNSTLVTFELFAKIILVKLCGSKPHQESIQVTLDEDLQKNDSRLEFRVCNVRNQAGIF SIDFLGKKDFQSAILNNFCPLDDSRVGLAILENQTKKGESIEVLLL >gi|197325098|gb|DS990368.1| GENE 396 397850 - 398437 670 195 aa, chain - ## HITS:1 COG:jhp0738 KEGG:ns NR:ns ## COG: jhp0738 COG0807 # Protein_GI_number: 15611805 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase II # Organism: Helicobacter pylori J99 # 3 195 4 192 192 248 65.0 6e-66 MNIQISNEANLPTRFGNFKIRSFRETKTISNETYLLEHLVIKTKEIPQNPLVRVHSECLT GDALGSLKCDCGGELQEALKLISKEQGMVIYLRQEGRGIGLFNKVNAYALQDEGLDTLEA NLKLGFKGDERDYAIVKTILEYYNLKKIRLLTNNPAKINYFSNFIEVERTPIIIPCNEHN AHYLEVKKEKMGHLL >gi|197325098|gb|DS990368.1| GENE 397 398572 - 399261 589 229 aa, chain + ## HITS:1 COG:jhp0837 KEGG:ns NR:ns ## COG: jhp0837 COG0378 # Protein_GI_number: 15611904 # Func_class: O Posttranslational modification, protein turnover, chaperones; K Transcription # Function: Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase # Organism: Helicobacter pylori J99 # 3 229 14 242 242 262 60.0 4e-70 MDNPSKKNIEVSMRILSKNDEEAIKLRQFYQNNDLFVVNLMSSPGSGKTTLLENIAKNHL LDFSVIEGDLQTNRDAERLAKYGVNAYQITTGEACHLEALMVKDALEKLNQQGDLKNFLF IENVGNLVCPASYDLGANMNIVLLSTSEGDDKVLKYPTIFLCADAVVISKSDLIEVFEFQ ISRVKEDLAKLKKEIPLFLISKNNLDSMKEFCNFLKLNKEKNYVSSHTF >gi|197325098|gb|DS990368.1| GENE 398 399239 - 399505 522 88 aa, chain + ## HITS:1 COG:jhp0836 KEGG:ns NR:ns ## COG: jhp0836 COG0298 # Protein_GI_number: 15611903 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Helicobacter pylori J99 # 1 77 1 75 78 87 68.0 8e-18 MCLAIPSKVIAIDSNTNTATLDTLGVTREASLDLMNEEVNIGDYVLLHIGYVMGKIDEEQ AKLSLETYEEIIKSIEEEERELQNANAK >gi|197325098|gb|DS990368.1| GENE 399 399530 - 400921 1709 463 aa, chain - ## HITS:1 COG:Cj1364c KEGG:ns NR:ns ## COG: Cj1364c COG0114 # Protein_GI_number: 15792687 # Func_class: C Energy production and conversion # Function: Fumarase # Organism: Campylobacter jejuni # 1 463 1 463 463 820 87.0 0 MDYRIEHDTMGEVKVPNDKYWGAQTQRSFENFKIGIEKMPKELICAFANLKKSLAIVNCK LKKLPEDKKNAITQACDEIIAGKFDDNFPLAIWQTGSGTQSNMNLNEVIANRATEILGGD FRKEKLIHPNDHVNMSQSSNDTFPTAMSIVAVTQVEKKLIPAIDTLINTFKQKVEDFKDI IKIGRTHLQDATPLTLGQEFSGYLSMLEHSKAQILSSLPTLRELAIGGTAVGTGLNAHPQ LSEMVSEELSQLLGTKFVSSPNKFHALTSHDAINFTHGAMKGLAANLMKIANDIRWLASG PRCGLGEINIPENEPGSSIMPGKVNPTQCEAITMVAVQVMGNDATIGFAASQGNFELNVF KPVIIYNFLQSLDLLANSILSFNVHCATGITANKEKIDYNLHNSLMLVTALNPHIGYENA AKVAKNAHKKGISLKESAKELGLVSEEDFNQYIDPSKMIGPKA >gi|197325098|gb|DS990368.1| GENE 400 401150 - 402244 1377 364 aa, chain + ## HITS:1 COG:Cj0448c KEGG:ns NR:ns ## COG: Cj0448c COG0840 # Protein_GI_number: 15791812 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Campylobacter jejuni # 8 330 9 332 365 166 35.0 7e-41 MFDGKCKAELQKALEENRLLKAEIQRLQEEKRSLQEQIETSTKSEEHSNDDIKIFKDMTL GLAKSCSTNLKTLQDDFAKSVDLLYSAKDFATENIKHTTQTQSVMIEGLSNMTAKLSDFN NMITQVQNDFTAISSVISLITDISDQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAE RTQKATKEIEMNIQVVQQNFSEVQTSTDEIIKEMEVLGTQNETLEKIQSSAAQISQGTQQ ILTTTFIGLVKLDHLLFKINGYSAIFTEDMEVKFVGHHDCRLGKWYDSGNGKENYSTLPS YPLIEAPHQGVHDNIIAGYEVMKSHGGTKDCMEEISKYFKQAEIESNNVVKYLDNLAAEK SATL >gi|197325098|gb|DS990368.1| GENE 401 402289 - 403341 1245 350 aa, chain - ## HITS:1 COG:BH3709 KEGG:ns NR:ns ## COG: BH3709 COG0451 # Protein_GI_number: 15616271 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Bacillus halodurans # 1 350 1 335 343 430 58.0 1e-120 MKILVTGTAGFIGSFLALRLLQRGDEVIGLDCINDYYDVRIKYGRLKNAGISQEKISYNT LIQSEKYPNYRFINLKLEDRENLFSLFKNEKFDKVCNLAAQAGVRYSLVNPYAYIDSNIV GFVNILEACRHHNIKHLAYASSSSVYGLNESMPFSTSDNVDHPISLYAASKKSNELMAHT YSYLFNLPTTGLRFFTVYGPWGRPDMALFLFTKAILEGKAIDVFNHGEMLRDFTYIDDIV EGVVRVIDNIPTPNPQWNGKNPDPHSSKAPYKIYNIGNNNPIKLMDFIEAIEKEVGKVAK KNMLPLQPGDVPATYANVDDLVSELNYKPNTSIQTGIKNFVKWYREFFEV >gi|197325098|gb|DS990368.1| GENE 402 403345 - 404463 1367 372 aa, chain - ## HITS:1 COG:jhp0673 KEGG:ns NR:ns ## COG: jhp0673 COG0075 # Protein_GI_number: 15611740 # Func_class: E Amino acid transport and metabolism # Function: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase # Organism: Helicobacter pylori J99 # 1 368 1 369 369 425 55.0 1e-119 MLLFTPGPTPTPEFVRLAMSAPTIHHRTQEFEEIFATTRNLLKEMLKTQEVLMLASSGSG AMEACVTSLCENKLLSINSGKFGERFGKIANSFGIPCVEIKNPWDIPASLDSVMEALNNN PEIDAFCIQACESAGGLRHPYEIIAKAIKDFNPEIMVIVDGITAMGVEPLDVSCVDALIG GSQKAFMLPPGMSIIGLSQKAIEKIERRNVGFYFNLKTELKNQIKNTTAWTAPTTIIIGL CAFLQEAKKIGFENIYQDTKARSLACDMALEGINLKIYPTIPALAMTTIADEQSDEIRKI LKNEFSVNVAGGQDHLKGKIFRINHMGMVPLSEISWVINAIELSLEKLGRRKFNGFANQI FLEQYYKIKNQG >gi|197325098|gb|DS990368.1| GENE 403 404724 - 405827 1574 367 aa, chain + ## HITS:1 COG:Cj1019c KEGG:ns NR:ns ## COG: Cj1019c COG0683 # Protein_GI_number: 15792346 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport systems, periplasmic component # Organism: Campylobacter jejuni # 1 367 1 371 371 270 41.0 2e-72 MKKIFLSMALVGSFMFAEEVKIGVVLPVSGAVGGFGELGKRGIDLAYKAQNKTKNGDTIT IVFVDNKSDKIESANAMQKLVSSDKVSVVIGPMISTNALAMTKIADDNQTPLIAPVATND RVTKGKKFVSRISFADSFQGIIAANLAFKDLGAKKAAILFDNSSDYSIGLTKAFRNQFKK LGGQIVIETNAQAGTKDFKAQLSSIKAANPDVLYLPIYYNEGALIALQAKQLGISIPTIG GDGLVSNQIFFDVAKEAGEGYMVTDYYSTSSKQTPKGEAFIKEYEATYNEPVSTFSAMLA DAYGIAVAAIEECGAQDRVCINDKIRNVKDYEGISGKFSLQNGEAIRSAVINQIQNGKLV YKTTIEP >gi|197325098|gb|DS990368.1| GENE 404 405837 - 406736 971 299 aa, chain + ## HITS:1 COG:Cj1017c KEGG:ns NR:ns ## COG: Cj1017c COG0559 # Protein_GI_number: 15792344 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid ABC-type transport system, permease components # Organism: Campylobacter jejuni # 1 299 1 298 298 308 60.0 7e-84 MDILTFVQQCINGLSLGSMYALIAIGYTMVYGCLRLINFAHADIIMVGAFLSFFAVSSLG LPFYASVIFAVVICMILGVGIDRVAYLPLRSAPRISMLITAIGVSFFLENLFNVLFGSTP RFFSSPEFFAKTFNFSNISITYITIIVPIVTLILLVALLQFLYRTKQGMAIRATAFDINT VRLMGINVNNIIGLVFVIGSALAGIGGIFYAISYPTIDPLMGIMIGLKAFAAAVLGGIGS VGGAVLGGFILGFTEVMAVAVFPELGGYKDAFAFLFLILVLLFRPVGIMGDWRLEKSRF >gi|197325098|gb|DS990368.1| GENE 405 406753 - 407952 1277 399 aa, chain + ## HITS:1 COG:Cj1016c KEGG:ns NR:ns ## COG: Cj1016c COG4177 # Protein_GI_number: 15792343 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport system, permease component # Organism: Campylobacter jejuni # 40 387 29 337 350 326 57.0 6e-89 MSKWQRFYDSNPTSATLGGHFLLYIGVIIVLFLAQCFLNDYVLRIFNNILIFIILAVSYN LINGVTGQLSLEPNGFVAIGAYITALMLLDEDSKLGMFDLADPHPFILSMNSELLPALLC SGLVAAFIAILLAFPVFRVRGDYLAIVTLGFGFIIKILAINNPEWTNGAIGLNEIPNNAD SVVGGLRNLMQGWIASPSLPEFLKESLAFIYKHSFENGADITVLFWSGILAAAAVILILQ VVSSKYGRAMKAVRDDEDAAIAMGINTFKIKTFAFSTSAFLEGVGGGLMAVLLTTIDPKI FGFELTFQLLIIIVLGGLGSTSGAILGAILVIGGGEWLRFLDQPLVFFGTDFGTYPGLRM VFFSLILLIIMLFAREGIMGKKEIWDLKPRFFGIFGRRA >gi|197325098|gb|DS990368.1| GENE 406 407952 - 408725 266 257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 14 228 33 238 329 107 29 1e-21 MALLELENVSIAFGGLKAIDNVSFEVKENTIFGLIGPNGAGKTTMFNIITANYKPTSGKV SFCGRNISQFKPNAIVNLGIARTFQNIRLFASMSVLENVLIGLHNEAKYSFFEAMFRVGR YFKEEKRIKNKAIELLEYLGLGDKINLPANSLSYGNSRKVEIARALATNPKMLLLDEPAA GMNPKETEELCELILKMKKDFNLSVLLIEHDMPFVNKLCSEVLVLDYGKKLFSGTPQEAI NDKQVIAAYLGDYYAKN >gi|197325098|gb|DS990368.1| GENE 407 408712 - 409407 250 231 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 227 1 235 245 100 29 1e-19 MLKIENLEVYYGLIAGLKGINFHIEEHEIITLIGSNGAGKTSTLNGIVHSVKTKGKVYFF GADISNIPTHKIIQRGIALVPEGRHIFVNLSVDENLRMGAYNNDENFLAMKEKMYSLFPR LKERYKQMAGTMSGGEQQMLAIARALMSEPKLLMLDEPSLGLAPKVVGELFEIISNLREN GITILLVEQNAFAALKVANRAYVLENGKITMGGDAKEILQNPEIKKLYLGG >gi|197325098|gb|DS990368.1| GENE 408 409518 - 409937 733 139 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224418046|ref|ZP_03656052.1| 50S ribosomal protein L13 [Helicobacter canadensis MIT 98-5491] # 1 139 1 139 139 286 100 1e-75 MNITKMAKANEIKREWIVLDAEGKTFGRLITEVATLLRGKHKPCYTPNVDCGDFVVVINA PKAKFSGMKLDDKEYFTHSGYFGSTKSKTLKEMLEKHPEKLYKLAVRGMLPKTKLGRAMI KKLKVYCDSNHPHTAQVSK >gi|197325098|gb|DS990368.1| GENE 409 409947 - 410336 650 129 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224418047|ref|ZP_03656053.1| 30S ribosomal protein S9 [Helicobacter canadensis MIT 98-5491] # 1 129 1 129 129 254 100 4e-66 MAKIYATGKRKTAIAKVWLTSGSGKLSINGMNLNDWLGGHEAIKMKVMQPLLLTKQEKSV DIVATTMGSGYSAQAEALRHGISKALVTYDTNFRAILKPKGLLTRDSRVVERKKYGKRKA RRSPQFSKR >gi|197325098|gb|DS990368.1| GENE 410 410212 - 412392 1255 726 aa, chain + ## HITS:1 COG:Cj1126c KEGG:ns NR:ns ## COG: Cj1126c COG1287 # Protein_GI_number: 15792451 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for N-linked glycosylation # Organism: Campylobacter jejuni # 76 638 11 586 713 152 25.0 2e-36 MIQISVLFLSQKVCLHEIQELLNAKNMEKEKQEEVLNFQKDNQLPSFGLDFISFSFRNLK NQLFIRLTSHSFFWHFVLLFIIFLLPLLFHYFDYLAFLKDSQNFFENTLILTSYDSYFYA KGAKEFLETFNFNLPYLSVLGGILAKIFGLDNVLVWSSVFLSASFGVVLYFVIFEVLEYL AILTQKANQIFAFLGAFFGVLSPHFYQRNGVGYFDTDMLILSLPLLAIFCLWQYLIKRQF YFLFFFSIVAFLSVGWHSGIQNLLLAGFLLYVGYEIFNILVFKHTKSPILLISSLFLIIL TPSSYGFFVLLLALVVFYFEKSKISWVVFCIACVYAYFFGLFNPMIAQLKAYLFGEIQYS KTFIYASVVESILETSKANFTTLMQRSGGVGLFFLGLIGFVGFGFYYSLVRKNFIYLCIF LFPFLLLGFAALKLGVRFSFFLSPILALGCVLLVVGFLEIIRRFLKITLLIFAGILAIWV ANLEYIIPKPILKAQEIEGLRALSFNSQDVAFVWWDYGYALEYFTQAQTLLHGGRHSGIV NYPIAEILLSHSAILAKNLSLLLAQKMQEIPKSQWNQIFEIVLKESNQTPQNFLRQLTLD RFRLSDYPKGEVYWILPKKMLYLIANINGFRNVDLESGERIKEGIFLYEKTSLKTKEEDI FFKDFYLKKIQNGALAAKLIFEDRQFVMDFDYLQSNLIQWLVFKNNPVMNLVFENESVLI YQIPKE >gi|197325098|gb|DS990368.1| GENE 411 412394 - 414217 1571 607 aa, chain + ## HITS:1 COG:mlr6755 KEGG:ns NR:ns ## COG: mlr6755 COG0367 # Protein_GI_number: 13475635 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Mesorhizobium loti # 1 600 1 642 665 288 32.0 3e-77 MCGIAGSLNMPKMSLDKVYSLMSHRGPNAKGMLEEMTKGGFLQFFHARLSIQDLSEESNQ PMNLEHLSIVFNGEIYNHMELRKELSCAFKTHSDTETILALYLHYGIDFLDKLDGMFAFV IFDRKAQKLILARDRMGKKPLFCYKKAESFGFASELNTLLGIKKMELDRDSLAFFLQSGF FYQDGTPYRDAFSLPNGHYGIYDLASHHLEIWSYFDLKAIYEKPKQKNLQESLEACEVLL KQSIKNRLLSSDLEVGAFLSGGIDSSLIVALASEINPNLRTFTIAFEGAYDESSLAEMTA KRYHTHHTTLKISTDLKHDIFKILQNYGRPFADSSAIPSYYVAREAKKYLSVILNGDGAD ELFGGYRRYVGHLLIPKIKALGGALGLFPKPREKKSLYNYFYRLLQMARNYQKDFKSYYL SATTDIFEGYFSFETRLNDSFNRDLESVFCSKISPLSQMLLLDSQSLLLSDLLPKMDIAT MANSLEGRSPFLSKMLVEFAPTLDDSLKIKGKKTKYLLRLLAKKYLDAEVYNAPKRGFEV PLKQWVNGELKEIILQVLQKSRISDQFLSKKEMDEICFGSKIPSEKRAKMLWSLFALEVW YQKYLEY >gi|197325098|gb|DS990368.1| GENE 412 414369 - 414785 534 138 aa, chain + ## HITS:1 COG:no KEGG:WS0834 NR:ns ## KEGG: WS0834 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 138 1 138 138 155 58.0 4e-37 MKKILFAVDDTKACQKAAEFVVDFFGDREDCTITIIHVKTPIMLYGEAALAAYEDIEKKE NEESDRLLEDFSAIFTNKGINIKQELLEGEAVSEVLNYAKDFDLLVIGQSEESFWNKIFS TNQNDFSQKSPIPILIVK >gi|197325098|gb|DS990368.1| GENE 413 415079 - 415420 279 113 aa, chain + ## HITS:1 COG:PA3235 KEGG:ns NR:ns ## COG: PA3235 COG3162 # Protein_GI_number: 15598431 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Pseudomonas aeruginosa # 11 99 14 103 103 64 40.0 4e-11 MEQKYLESIQRFKNFVAFRNKVSLILSLIVLVCYYAFLLSIGIFPEVLGYRVGPSAITLG IILGIFLIVLCVVATGLYTFFANWYFDKIQKEVIEDLEKSGALEDLKNGKIKE >gi|197325098|gb|DS990368.1| GENE 414 415423 - 417072 2177 549 aa, chain + ## HITS:1 COG:PA3234 KEGG:ns NR:ns ## COG: PA3234 COG4147 # Protein_GI_number: 15598430 # Func_class: R General function prediction only # Function: Predicted symporter # Organism: Pseudomonas aeruginosa # 30 549 32 551 551 579 62.0 1e-165 MKKFFGIFFVLMGVSFGAGFDMDNVVLSEFNPIAVTLFLIFVLATLGITYYSNKKSQSAS GFYTAGGNITGMQNGTAIAGDFMSAASFLGITALVFTNGFDGLIYSIGFLAGWPIILFLI AEKFRNLGKFTFADITAYRLESKPIRIISAVSALSVIVFYLIAQMVGAGQLIQILFGLPY GAAVIIVGILMICYVTFGGMHATTWVQIIKAILLLGGATFMAIMILYLTKFDLSYYFNQA IQNHLQGEKIMLPGGFLPDTISAVSLGLALMFGTAGLPHILMRFFTVKDAKEARKSVFYA TGLMGYFYILTFIIGFGAIALLLGNPQFINADGSFNGITNMVAITLAKVLGGDIFYGFIS AVAFATILAVVAGLAISGAGAISHDLFVNVCKNGVCDPKLEMKVTKISTIGIGIFAILLG IIFEKQNVAFTVGLAFAIAASVNFPILLLSIYWKNLTTKGAFWGGLIGLVSVLVMVILSP SIWIKSFGFSEAIFPYDHPAIFSMPITFILIYIISKLDNSQRAKIDKEGFAAQDFRAQSG VGISEAVAH >gi|197325098|gb|DS990368.1| GENE 415 417242 - 418273 707 343 aa, chain + ## HITS:1 COG:PAB2393 KEGG:ns NR:ns ## COG: PAB2393 COG1275 # Protein_GI_number: 14521012 # Func_class: P Inorganic ion transport and metabolism # Function: Tellurite resistance protein and related permeases # Organism: Pyrococcus abyssi # 13 336 3 333 339 101 28.0 2e-21 MEENKEFVEENFWLLHFPIMFFASVMGVGGLSLVVNKSIDIFELQESFGWLSILCVIVSV ILFIVIVILYGLKMVKYPKAFFEELKHPVKINFFAAVSVSTLIILTLILPFVSDWFALAL FYVGALLQLVFSLYVVKYWFINEMKQKMASPAWFIPIVGNLIVPLAGMKLNLALGDMVIG HEVLIFYFGMGTFFWILLGAGLLFRLIFGENLPQKFLPTLFIFIAPPSIFGLDVLLMFND FIPIGNLYIIASASFSVALFFILLMASIFKVFLNIKFALSWWAFTFPIAAFSLCALELYN ISGSAIYKMFGILGGILCVTIVLIVGFRTLIAIKNREVCVMEE >gi|197325098|gb|DS990368.1| GENE 416 418297 - 420081 1785 594 aa, chain - ## HITS:1 COG:Cj0684 KEGG:ns NR:ns ## COG: Cj0684 COG1198 # Protein_GI_number: 15792033 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Campylobacter jejuni # 12 593 39 616 617 521 47.0 1e-147 MNIGDIIKVPLLKSVKNAVVLQSCNQPNFQCKSLESTQEYFSQNQLDLAEFITSYYCTSR SIAYGIFTPFVKNSTPIKQTSLDFTLPNLSPKQIQALDFINSHQSSLLFGDTGSGKTEIY IHLINQTLKQSKNALLLMPEISLTPQMEKRLYAVFGDILAFWHSKLSSKKRKEILKRLHN GEIRILAGARSSLFLPLDHLGLIIIDEEHDDAYKSTSAPRYHTRDVALYLAKKTNIKILL GSATPLANTYYKFKQTQSVFRLKGTYYQSKKEFLFCHSSDELHPFVLQNLKENLQAHKQS IVFLPTRANFKHLLCNTCGNNIQCPNCSVSMSLHSKESSLKCHYCHYTSPIPESCPICGG TLSSLRIGTQEFANHLSKELPNANIACFDRDSITTQKKLTETLKNFNHHKIDILIGTQML SKGHDYHNVALSVALGLDYILKGSDYRSREKALALMFQLSGRSGRKENGKVIIQTLQEDF FRNYLDDYELFLQEELTFREHLYPPFMRLALIKVSHKKQETAIIIINDILTILKQNKTDK IEIVGYGIAPIEKIANKWRYVILLRSKETKALHQMLLKIKNIPCEIDIDPIEFN >gi|197325098|gb|DS990368.1| GENE 417 420154 - 420381 165 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418055|ref|ZP_03656061.1| ## NR: gi|224418055|ref|ZP_03656061.1| hypothetical protein HcanM9_02144 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0736 [Helicobacter canadensis MIT 98-5491] primosomal protein N [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0736 [Helicobacter canadensis MIT 98-5491] primosomal protein N [Helicobacter canadensis MIT 98-5491] # 1 75 1 75 75 119 100.0 9e-26 MDNILRVCIVGRHYDIPTQEISQETLISLNHLIDENQNINPKDLLQAFLEASEISNTLKT TIQKANQILESNKNP >gi|197325098|gb|DS990368.1| GENE 418 420381 - 420614 471 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418056|ref|ZP_03656062.1| ## NR: gi|224418056|ref|ZP_03656062.1| hypothetical protein HcanM9_02149 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0737 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0737 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 77 1 77 77 90 100.0 4e-17 MEEAQNISSKLLKGVDDLVTELQRTRDENQQLRQQIVLLKAENEAKNTEISSLYDEISSK ERELESVLNKIQNVLGR >gi|197325098|gb|DS990368.1| GENE 419 420770 - 421522 798 250 aa, chain - ## HITS:1 COG:no KEGG:CCC13826_0803 NR:ns ## KEGG: CCC13826_0803 # Name: not_defined # Def: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3) # Organism: C.concisus # Pathway: not_defined # 1 247 1 252 254 87 31.0 4e-16 MRGIILGGGIISGDDGKRYHFSLQDIQNLEGRSEQNLEKCEVDFEVDESGEKAIAKAIFI TKSSTSVADSITNSLNDNSINSIKLKAYIGIIFSALSFIPFIGWFFAIAGVIVYIFALIG ISKESGCKSIIFNFVVSAVLSFASTIIISFSTVSAVVGSLSNAGSGIVAGIGFVGIIGFI IAISALYFSYKYYSLLSEVTNERLFFYAFIISVIATLTIFIPFLGILLAIISYIVQIVAW VKFKEIRKIN >gi|197325098|gb|DS990368.1| GENE 420 421700 - 423676 1990 658 aa, chain + ## HITS:1 COG:HP1114 KEGG:ns NR:ns ## COG: HP1114 COG0556 # Protein_GI_number: 15645728 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Helicobacter pylori 26695 # 1 658 1 658 658 887 68.0 0 MQKFILNSSYKPAGDQPQAIKKLSDFIKSGSQYQTLIGVTGSGKTFSMAHIIEELQMPTL IMTHNKTLAAQLFSEFKGFFPKNHVEYFISHFDYYQPEAYIPRQDLFIEKDSSINEELER LRLSATTSLLAYDDTIVVASVSANYGLGNPKEYLEMIEKFEIGSSYNQRNILLRLVEMGY KRNDSFFDRGDFRVNGEVIDIYPAYSEDEAVRLEFFGDELEKIVILDSVDKKPLKSLESF VLYAANPFIVGADRLKVAIKNIEKELAERLNFFKKENKMVEYERLKSRTEFDLEMIESTG ICKGIENYARHLTGKAPGETPYSLLDYFAQKNKPYLLIVDESHVSLPQFGGMYAGDRSRK EVLVEYGFRLPSALDNRPLKYEEFIHKAPHFLFVSATPAQKELELSGNHTAEQLIRPTGL LDPLYEVLSVENQVEVLYDEAKKVIARGERVLVTALTKKMAEELTRYYNDLGLKVRYMHS EIDAIERNQIIRGLRVGEFDILVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQT MGRAARNVNGKVLLFADKITPSLKKAMEVTDYRRSKQEAFNKAHNIKPQSVSRKLDENLK NQDLGMLYEKAKKKEKMPRQEREKLVKELTKKMHEAAKRLDFEEAARLRDEIIKMRNL >gi|197325098|gb|DS990368.1| GENE 421 423724 - 424818 955 364 aa, chain + ## HITS:1 COG:HP1576 KEGG:ns NR:ns ## COG: HP1576 COG1135 # Protein_GI_number: 15646183 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Helicobacter pylori 26695 # 22 351 2 325 327 378 58.0 1e-104 MIKICYTSNFKLKSHLNKESKIISLKNINKTYPNGFCALKNINLEIKRNDIAGIIGYSGA GKSTLIRILNRLEEPTSGEVLIDGVDILALNSKQLQKKRQQIGMIFQHFNLLNSRDVFGN IAFALEIAKWDKSAIEKRVYELLELVGLESKAHFYPSQLSGGQKQRVAIARALANNPKLL LCDEATSALDAKTTKSILALLKELQSKLSLTIVLITHQIEVVQQICNKVFVIENGEIVES GAVIDVFSNPTKHITKELVGFISEREENVIAHLKDFRDIYRVIFTGPNAHNPLISQVIKE FGIDINILGGNIQEFNSNEIGYLVLRFLGEKTKIIQSLEWLKEKGVLLQQVSLEKYDSLN KEKK >gi|197325098|gb|DS990368.1| GENE 422 424815 - 425528 1014 237 aa, chain + ## HITS:1 COG:FN0659 KEGG:ns NR:ns ## COG: FN0659 COG2011 # Protein_GI_number: 19703994 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Fusobacterium nucleatum # 28 235 21 229 233 178 51.0 9e-45 MKEFLKISDRIFEDLLLQIFGGSGIPFLIAKATLETLYMVGFSVLFAIIFGLPLGIFLAL TRKDGIKPLPAVNHFLSVLVNLIRSFPFIILILVILPFSNFLIGISTGSTAAIIPLSIAA IPFIARLFEGAFLEIKKDLIEATQSMGANLYTIIKMMIAEAKPALINCVIITLVSLVGYS AMAGVVGAGGLGDLAYRLGFQSFKVDILLYSVLVIIILVQIIQSIGDMIVKMARKYY >gi|197325098|gb|DS990368.1| GENE 423 425538 - 426356 976 272 aa, chain + ## HITS:1 COG:FN0658 KEGG:ns NR:ns ## COG: FN0658 COG1464 # Protein_GI_number: 19703993 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Fusobacterium nucleatum # 37 268 27 259 261 224 52.0 2e-58 MKKILLMVVSLYFLCGCGDQTQAKGESDSKYSNHIIVGATPVPAAEILEFAKPLLEKEGF SMQVQVFTDYVMPDIALNDKSNDANLYQHKPYLEAQNSQRGFNLVSLAPIYVVPLALYSK NYKSVAEIPEGADVALPGDSSNLARALILLHNNGVIKLKDPNNLASTIEYDILENPKKLR FKPVEASSLPSIYPSVDAAVINANYALQAKMSVKDSLFYEDDTSIYVNVLAAREDNQDNP AILKLQEILLSKEVSEFILEKYKGEIIPVKKK >gi|197325098|gb|DS990368.1| GENE 424 426392 - 427987 184 531 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 320 505 11 213 312 75 29 5e-12 MVQITGLSMHYATKKLFENVNLKLDKGKHYGLIGANGAGKSTFLKILSGEIEPSSGDIAF NTGARLGVLGQNQFAFEDFSIKDCVLYGNKRLYDAIKEKEKLYEAGDFSDEVNERLGELE IICAEEDPTYEYDVQIEKILEDLGFPAKIHNDLMKTLTGGDKFKVLLAQVLFPKPDILFL DEPTNNLDLRAISYLEEQLKRHEGTLVVISHDRHFLNSVCTHILDLDFRNVREFSGNYDD WYIASTLIAKQQEIERNKKLKEKEELESFIARFSANASKAKQATSRQKQLEKLDIQALEV SSRRDPSIVFRVNRQIGNEALNIEKLQFSYGDLCVLKDLSLDILPGDKIALIGRNGIGKT TFCDLICEKLKPQSGVIKWGATIERGYFPQNTTEVIGGEETLYEYLRGFDKKREATEIRN ALGRMLFSGEEQEKSVGSLSGGEKHRIMLSKLMLEGGNFLVLDEPTNHLDLEAIIALGEA LYKYSGNVICVSHDRELIDAFANRIIEFKENNEVVDFRGSYEEYLASQGLA >gi|197325098|gb|DS990368.1| GENE 425 428125 - 428622 604 165 aa, chain - ## HITS:1 COG:no KEGG:WS0892 NR:ns ## KEGG: WS0892 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 10 164 1 157 162 182 57.0 3e-45 MIKKIFASTLLSLSLLNANECVCFELKGEFGEEIKAILKKYSKNLGSKDIQVVREDADLT VQEKSFLQSLIGTGEVASSSQKYNLENGKKLYNRDCASCHGEKGEIAVAKKAPINTWSAQ NIADEIKSYQDQSFQGQSRFVKNQIAQRYTKKDMEDVGAYVESLK >gi|197325098|gb|DS990368.1| GENE 426 428993 - 429319 501 108 aa, chain + ## HITS:1 COG:Cj1250 KEGG:ns NR:ns ## COG: Cj1250 COG0151 # Protein_GI_number: 15792574 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Campylobacter jejuni # 1 105 1 105 416 99 49.0 1e-21 MEIVIVGSGGREYSIGLALQRECRIDGIYFYPGNGATSKLGKNINFKDDNEFIDFAITQK IGLVIIGPEAPLVEGLADKLRENGILTFGPSQAAARLEGSKAYMKLAS >gi|197325098|gb|DS990368.1| GENE 427 429636 - 430397 821 253 aa, chain + ## HITS:1 COG:Cj1250 KEGG:ns NR:ns ## COG: Cj1250 COG0151 # Protein_GI_number: 15792574 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Campylobacter jejuni # 1 251 167 415 416 305 60.0 7e-83 MLEGKSFGDSGKKVVIEEFLDGFELSVFAMCDGKDFIVLPAAQDHKRLLDGDKGPNTGGM GAYAPSPLASSALIESIKESIILPTLAGMEKEGNPFSGALFCGIMVVKGKPYLLEFNVRF GDPECEVLMPLFKNGLLDCFLGCASGNLKSVHYELEESVCVGVVVASRDYPYKNSKKAKI VISESQSQNSLISFAGVSSEGGELVASGGRVLVCVGKGRNVQEAVKYAYAKVDEVHFEGM QYRKDIAYQALGK >gi|197325098|gb|DS990368.1| GENE 428 430397 - 430852 432 151 aa, chain + ## HITS:1 COG:Cj1251 KEGG:ns NR:ns ## COG: Cj1251 COG1714 # Protein_GI_number: 15792575 # Func_class: S Function unknown # Function: Predicted membrane protein/domain # Organism: Campylobacter jejuni # 4 151 3 149 150 93 34.0 2e-19 MDIEKIEETLAREEIKLAPLWKRFVAFMVDDLLVSMILIGINWDRIAQNTQDTEAMLSIV SSSWMALYLIKLLYQWLFVHFYGATIGKIVVRIRVIEVELLDNPKMGQAFVRSCFRLLSE ILMYLPFLLVFENRIKQALHDKVAKTIVVNL >gi|197325098|gb|DS990368.1| GENE 429 430865 - 432181 1405 438 aa, chain + ## HITS:1 COG:jhp1138 KEGG:ns NR:ns ## COG: jhp1138 COG1452 # Protein_GI_number: 15612203 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Organic solvent tolerance protein OstA # Organism: Helicobacter pylori J99 # 27 438 35 453 766 292 37.0 8e-79 MIKKEIFAFSVIAALALIPSHMEARAAIKQFNNKQESIFEFLADDMEYSKTQIIGKGHVT IINLDYFVTANKAIYDTQNREIILSGNVNAYKGNSFYLKSKEVKIKLQEDYSFLEPFYLQ DSESGLWVDSQSAEFNNNVYQIKEANVSTCSVNNPIWKIKAKEGEYDANKEWLTIWHPHL CIYDVPVLYFPYLSFSLGYKRKSGLLYPIVGNSGDDGLIYSQPIFIAPDDNWDMTFTPQI RTKRGGGFYNEFRIIDDKDEILWANLGFFANSRSYQQTYDLENRNHYGFQLKYGRENLFA KESNYFYEDGLYLDISQISDIDYFRLQDENAQNIADLQGNLLTSRMNYYLKSSKDYLGFS ARYYSDLEQTSNARTLQTLPQIQYHRQIENILVDNLYYDFDYKANHFTRPIGYRAIQQEA KLPIIYTQSLWNDFALAS >gi|197325098|gb|DS990368.1| GENE 430 432525 - 433289 684 254 aa, chain + ## HITS:1 COG:jhp1138 KEGG:ns NR:ns ## COG: jhp1138 COG1452 # Protein_GI_number: 15612203 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Organic solvent tolerance protein OstA # Organism: Helicobacter pylori J99 # 6 250 475 758 766 91 25.0 1e-18 MNLKNGRYLSQYYQIKLNTDLVKKYDHFGHTLSLEAEYILPGFEDKTGDFTNFFTLPGDR QEFRVKGTQNFYTLDNSLILSHKMEQYFYFEDSGEELGELENEVQYFLNHQWSFLSDIFY SHKRGRISEATHQINYESDYINASFGHFMRENFAHEDLLNGRFGEANYINAGFRKEFENF DLFASVGYDYKERYLKTWQVGIDTQIRCFSFGIKYVSEIYPMLTSRGAEARDDKYVLLTI KFIPLLSSDVKLGN >gi|197325098|gb|DS990368.1| GENE 431 433307 - 433984 515 225 aa, chain + ## HITS:1 COG:jhp1137 KEGG:ns NR:ns ## COG: jhp1137 COG1926 # Protein_GI_number: 15612202 # Func_class: R General function prediction only # Function: Predicted phosphoribosyltransferases # Organism: Helicobacter pylori J99 # 14 218 16 220 234 174 40.0 1e-43 MGGITHSLMRKALFENRDDALQKLLNNMPLSFFENQDCIVVGISFNGILLANSLAQAIKA PLAFLFTSPILAPNNLECEIAMATETHDVVISDALVRSFEISLDYIYGEVKRQYEDKMLP LIYQYRKGNPLISLKNKRVLLVDDGVDSGLTALSAIKSVTTLQAKTIYFATPVAPYEVTK VMEEVTDGLFCLYKTKTFVDIEYYYKDYPPVESNVIEEIFSKIQS >gi|197325098|gb|DS990368.1| GENE 432 434001 - 436148 186 715 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|118443587|ref|YP_877456.1| 30S ribosomal protein S1 [Clostridium novyi NT] # 604 710 255 352 387 76 36 3e-12 MGQVTLSFLEKEEKYIFNKFAKQCSGSVYLQSGNNVVLATIAIDTQEVVEEDFLPLTVQY IEKAYAAGKFPGGYIKREAKPGDFETLSARIIDRSLRPLFPKDYCYPTQITLMVLSADED ADLQLLALNAASAALYVSEIPLSFPVSAVRIGRIEGEFVINPSLKALEESTLDLFVSGVK EDLLMIEMRSFGGVAIHQENTEFSANELSEEEMIEVLEIAKKAISQRSQAFEESFKDCVK TPLVLENKRKNFVSSEIVEYIKESHLEELKDIIQSLSKTERNSLLHAFARKIQKEWEEKN LKEIESLEKCVLESVLKIKREIIRTMILEESKRADGRELKEVRPISIETNFLPNAHSSAL FTRGQTQALVVATLGGEMDAQSYELLTDKAPLKERFMVHYNFPPFSVGEASSISAPGRRE LGHGNLAKRALEASVINGDLKTIRLVSEILESNGSSSMATVCGGSLALAAAGIKCTSLIA GVAMGLVCENDKYAILTDIMGLEDHDGDMDFKIAGSRRGITAMQMDIKLGGLKSEILQKA LMQAKEARNHILDLMEEAKEKIVLNESVLPSSQIFSIEPSKIIDVIGQAGRTIKEIIEKF SVAVDLNRENGEVKVSGSNKEKVEAAKMHILKIIKNPQELYKIGDIYQGKVKKIVEFGAF VELPKGYDGLLHISKITNNREQKVSDVLKEGDNVEVEVLSLSKNKVELKLLQILA >gi|197325098|gb|DS990368.1| GENE 433 436171 - 436923 596 250 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 240 1 241 245 234 48 8e-60 MIDIKHLSKSFHNHLVLKDISLNIQKNKTYAILGPSGSGKSTLLRCINLLECADSGTMIL NNIKIDFSHKIKKQDLIKIRKNTGMVFQNYNLFANKTALQNITQSLITVHRYSKAEAENI AYEYLEMVGLKDKANRYPSMLSGGQQQRIGIARALAFNPEVILFDEPTSALDPELVDEVL NVIKMIHNKTMILVTHELNFARKIADRILFMADGEILEDATPEEFFTKPKTQRAKQFLNK FIKMDCDYII >gi|197325098|gb|DS990368.1| GENE 434 436920 - 437636 560 238 aa, chain - ## HITS:1 COG:SPy1658 KEGG:ns NR:ns ## COG: SPy1658 COG0765 # Protein_GI_number: 15675528 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 2 228 24 250 267 158 37.0 9e-39 MQLFDFEYALSAFPTLLKGVPISLAIAIVGFILGAILGLILSLIRIYRVPILFQLATLYI SFFRGIPVLVQIFLAYYGIPLVLRYFNHQYGLNIDISGIDAIYFMYLVYALYCSAYLSEI FRSSILSIDKGQLEAAYSVGMNTTQALFIIILPQSMLLALPNILNFFIILIKETSLVFAA SVPEIMGIATLEADRSSKFLEVYIIAALIYWVISIFLEKSFAILETKLLSYKKMMGKS >gi|197325098|gb|DS990368.1| GENE 435 437638 - 438411 873 257 aa, chain - ## HITS:1 COG:SA2202 KEGG:ns NR:ns ## COG: SA2202 COG0834 # Protein_GI_number: 15927992 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Staphylococcus aureus N315 # 3 257 1 257 259 134 34.0 2e-31 MKIKLLLIALIAFLFNACSNTENTQSIKVGSEGAYKPFSYVDKDGKITGYDVEVVRILQE IDPSLNFSFNYAPWNALFLGLDSARFDMLANQIIKTQEREEKYLFNAESYFVSTSQFVTR ADNADINTTADLKGKIAGGVVGSAHTKILEDWNNQNGNILEIRYYKDLIPLLQDLVNKRI DVHLNDPASIADIIKEQNLNLKVLDERISQSPVYFVFRKENLSNDLIQKIDAALLKAKET GKLRDLSMKYFGVDQSQ >gi|197325098|gb|DS990368.1| GENE 436 438421 - 439581 1416 386 aa, chain - ## HITS:1 COG:CAC0390 KEGG:ns NR:ns ## COG: CAC0390 COG0626 # Protein_GI_number: 15893681 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Clostridium acetobutylicum # 2 383 8 382 384 390 52.0 1e-108 MNFNTKAITTAENPNLSGHTSSDVISPIHLSSTFAKPDYENNIKGFSYSRLTNPTREVLE KKVAALENAKHCIAYASGQAAESVAILSFLKSGDEVICFDDIYGGTRRLLSFVFNHFGIK VTYVDMTKIENIKNAINANTKAIWLESPTNPLLQICDIKAICNLAKEHNILSIVDNTFAT PFLQQPLELGADVVLHSLTKYINGHSDSIAGAICLNDEKLYEKLRFVSNSTGMILSPFDS YLNARGVKTLKLRVQKQCENAFAVARFLEKHKKIKKVLYPGLDSHPQHNLAKEQMNGLFG AVVSAYLDTDEEGMKRFAQNLDLFILAESLGGVESLFGCPYYMSHGSVDENIKKQMNITK NLLRFSVGLEEKEDLISALDFALNKI >gi|197325098|gb|DS990368.1| GENE 437 439848 - 443816 2204 1322 aa, chain - ## HITS:1 COG:Cj1051c_1 KEGG:ns NR:ns ## COG: Cj1051c_1 COG0286 # Protein_GI_number: 15792378 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Campylobacter jejuni # 1 883 1 881 885 611 43.0 1e-174 MITKQNIELLLDSLGFTKEGKKYKKILRDSISLEVDCANQKIIYPEQITIHDETTSNFSH PENFVVFECVHRLLQKGYKPKHLELEPKWNLGRDAKGGKADILVRDRQDNPYLLIECKTT DSKNSEFAKEWAKMLENGGQLFSYFQQERGVKYLCLYTSDFNQSLLTYENYIISVIDNEA TLNQQSNYEQKAIGYKDAHNNEELFKVWKETYSSDYATNGIFENKIQAYKITQLKPTFES LKSLDYSSMQRKKHQWATILRYSGVGDRGVALNKIMNLLLCKITDEAEHKEDLRFSWGGF SADDAFSLVDRLQYLYQKGMQKYLNINIIYYSKNDIDNAFSNRYKDTPSRNNIENIFNDL KYFQNGDFNFLEVHNKELFNKNFNILLQVVLMLEDIKFSEDNSQFLGDFFESYIHDMPQH EGQYFTPVPLVNFIIYSLPVLKDSRVLDFACGAGHFLSEYSKINNTYEVQYKGIDKDQRL AKISAIASFMYGKTMDIKYDDALKHGIIENDSINTIISNPPYSVDGFLRTLNKTEKESYT LFNKNISLDTDKIECFFIEKASQVLESYGLLSLVLPSSIFSNNDTITIQTREILLRDFYI IAICEFGNQTFFKTGTQPIILFAIKKLRDKNITTQETRAQYFYKLIMEDKTDNPYKEELD ELLHSYANFMRYKYKMIEKLFFGVLENIDSIHHNNFKEYIQTYNDILKKEKEKYNSKTKK YKDKYPFTPSQTLQEFIKQKEAEKFLYFCYALDSEPLIIKAPKDNEKQKKFLGYYWSSKK GQEGIHYFMKSGVVENNINYIDTPLFNPNNRFCVNSISFAILSHFVKYLDSKDIDANFLQ QFLRQEKNNKNNEFLESARLIDMIDFEKVEFNKAISLNPHSNDSNSVQSNPFANSKYELV KLESICKMYQPKTITAKEILEKGDYKVYGANGVIGFYNQYNHKDSEVAMTCRGATCGAIN YTEPNSWITGNAMIITPLEKNLISKKFLVYILPLSNIKSVITGSAQPQITRNNLATLKIP LPPLEIQKQIVAECESLESQCNTIEQSIKAYQELIKAILWHCGITTESTKDFDSILMSLA ELESKLDFELLGKTKQDSKAFLQNLTNTLNTLPTPPSNGWEKAKLCKICNINQETYNPSN DEGEMLYIDIDSIEKGTGKINFNDKISCRKLPTRARRIARADSVIISTVRPYLKGFAYLK NEIKDSIFSTGFAILQGKENLVKSQFVYYCFMFSDDLMQQMKIKMPKSSYPSINTEDLES FTIPLPPLEIQTKIAQSIETIQSQISFLDSALPLLQSQKQEVLKKYLFKTFLDRFTKQAK KF >gi|197325098|gb|DS990368.1| GENE 438 443856 - 444104 385 82 aa, chain - ## HITS:1 COG:no KEGG:WS1260 NR:ns ## KEGG: WS1260 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 82 4 85 85 71 46.0 1e-11 MENKNEIQYPCSWHYRIIGNSKNELIEAAFEIIEKEFIHTLGKESSGGKYHSINLEIDVE TKEERDKIFADLQKDSRIKFVL >gi|197325098|gb|DS990368.1| GENE 439 444113 - 444526 435 137 aa, chain - ## HITS:1 COG:jhp0448 KEGG:ns NR:ns ## COG: jhp0448 COG0824 # Protein_GI_number: 15611515 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Helicobacter pylori J99 # 3 133 2 130 133 108 42.0 2e-24 MYQTRIYYEDTDCGGIVYHSNYLKYCERARSEWFFSQGILPQQNNIGFVVKNMTLDFLSP AKLGDLLTIHTEILEQKNVSITLKQTILRDSLQKNSLEKSDSKPIFTAIITLVCLESTTQ RITKIPQWAKEIFQISH >gi|197325098|gb|DS990368.1| GENE 440 444806 - 445864 880 352 aa, chain - ## HITS:1 COG:jhp0042 KEGG:ns NR:ns ## COG: jhp0042 COG2957 # Protein_GI_number: 15611113 # Func_class: E Amino acid transport and metabolism # Function: Peptidylarginine deiminase and related enzymes # Organism: Helicobacter pylori J99 # 1 338 1 329 330 335 51.0 1e-91 MKKFYAEWAKQDGILLAFPHQDSDWREYLAEVREVYCQIIYEIIQLQSCLILCQNKEEVK QIIKSYAKNSQWNPKYLKNLYLIEIPTNDTWARDFGGITINYQGQNLVLDYGFNGWGLKF AANYDNNVTQKLYKLGIFKQIKTKKIILEGGSIESNGEGIILTNTQCLLESNRNPAYSQN KIEKILKKDFGAKKILWLNYGYLAGDDTDSHIDTLARFIDKNTIAYLKCEDKNDEHYQAL AKMEKELKKLKNLDQKPFKLVALPFCEAKYFHNERLPATYANFLFLNGAVLLPIYRDKND KKAIEILQKALPKHKIIPIDCSVLIRQHGSLHCISMQFPKSTLNYKALKKFQ >gi|197325098|gb|DS990368.1| GENE 441 445932 - 446549 877 205 aa, chain + ## HITS:1 COG:no KEGG:WS1599 NR:ns ## KEGG: WS1599 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 12 204 7 185 186 157 49.0 3e-37 MPIQSLKSGVDYTQELQSAMSSSPLSKETSSVEERQKKIQEAASKVDAKSVMTGYIVQFQ MEISIEAKNNFGAQGVAGFMGTSASEDPAKLNSILSGLDLEKIGYDGKALQDLTTQEAKD LISEEGFFGVSQTSDRIADFVLAGAGDDVEKLQAGREGIIRGYEQAEKTWGGELPDISKE TLQKALEKIDKKLSELGVNVLEQEV >gi|197325098|gb|DS990368.1| GENE 442 446527 - 447582 562 351 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229879751|ref|ZP_04499249.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Slackia heliotrinireducens DSM 20476] # 19 344 439 771 781 221 39 7e-56 MSWSRKCRVDLAKTRDNYLILSIESSCDDSSIAITQIKDKKIVFHQKISQEREHSSYGGV VPEIASRLHAEILPQILEHTKPYFKDLKAIAVTTEPGLNITLMEGLMMAKTLSFALEIPL ISVNHLKGHLYSLFLEQEAIFPLGALLVSGGHTMLLEARSFNEINIIAQTIDDSFGESFD KVSKMLGLGYPGGPIVEFQAQKGNDRAFELPLPLKSRKDFAFSFSGLKNAVRLVIQKQEI QSKAFVEDICASFQRVAIEHLSKKTQIFFEKNSKSMDSWKYFGVIGGASANLVLRNEIQR ICDYYGVTLLLAPLEYCSDNAAMIGRVALESYLRGEFGDFNLQVKPRVSSL >gi|197325098|gb|DS990368.1| GENE 443 447613 - 448914 1502 433 aa, chain - ## HITS:1 COG:jhp1115 KEGG:ns NR:ns ## COG: jhp1115 COG0124 # Protein_GI_number: 15612180 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Helicobacter pylori J99 # 3 432 2 435 442 458 54.0 1e-128 MPITPRTLSGFKDRLPKEAYAKSQMLKSIVTSFEKFGFSPIETPHLEYAEILKKQGSDEI QKEMYHFIDHGGREVALRFDLTLPLARFISQYKNELGLPFKRYCIGNVFRGERAQKGRYR EFTQCDFDFIGTQSIGSDAEIIQVIFQSLSDLGLKNFTIHINNRKIFNGLCESLNAKEDT TEILRIIDKIDKIGQDSVSKELQEKTSLTLTQIQTLLDFIALKQEGDSLKFLSLLSPYKA YNQTLKEGLEELESLCEILAPLIPQSFYQINLSIARGLGYYTGIIYETTLGDLPTLGSVC SGGRYDNLTQNFSNEKMSGVGASIGLDRLLAGLEELGLITSSTPAKAILIPLNNLQYAYT TAKSLRELGIKIEVYPEVIKPQKAFKYANNKGYEWVIITGESEQATHSASLKNMQNGEQQ NQLSLEKIADILK >gi|197325098|gb|DS990368.1| GENE 444 449074 - 449277 358 67 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224418082|ref|ZP_03656088.1| 50S ribosomal protein L31 [Helicobacter canadensis MIT 98-5491] # 1 67 1 67 67 142 100 3e-32 MKKGIHPEYVPCKVTCVTSGKEIEVMSVKPELRIDISSFCHPFYTGSDKVVDTAGRVEKF KQRYNLK >gi|197325098|gb|DS990368.1| GENE 445 449288 - 450106 951 272 aa, chain + ## HITS:1 COG:jhp0499 KEGG:ns NR:ns ## COG: jhp0499 COG0313 # Protein_GI_number: 15611566 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Helicobacter pylori J99 # 1 266 1 277 289 240 47.0 2e-63 MVTFLPTPIGNLQDISFHTLEVLERCEVLLCEDTRVTKKLLSLLIERRFLKNKIYQYIPF HTHNQSEFLKQVSLDFFSQDIAFLSDAGMPCISDPGVELVRFLQTNALEYEVVGGISALT LAVAFSGIVEKEFTFLGFPPHKKKERLENFVENFKSAYPLVYYESPHRLLETLEMMCEVD SQRVVFVAKELTKKYQQTYKGTLQEVLEQLQKTSIKGEWVVVLENKKETEKEKTLTQEMI YLLDIPPKIKAKILSKLNNKPASEYYDLLCQK >gi|197325098|gb|DS990368.1| GENE 446 450142 - 450828 211 228 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 3 227 9 246 255 85 29 4e-15 MVVYGKRIVELILAQHQEKIINIYLAKEVDKTFFNRLKKTQKPILRLDAKKAQAMAKGGN HQGYLLEIEALEPVEFHFIKSMDFVLVLCGISDVGNLGSLFRSAYGLGVDGIVICGIHNF KQEGVLRASSGAMLGMPFCVVYNPLDVFHELKQADFVLLGTSLQGQNLPISLESKKALVL GNEGEGLSKKVLAKMDYNLTIPMKRDFDSLNVGVAGAILIDRIINGRN >gi|197325098|gb|DS990368.1| GENE 447 450815 - 451738 1254 307 aa, chain + ## HITS:1 COG:no KEGG:CCV52592_0831 NR:ns ## KEGG: CCV52592_0831 # Name: not_defined # Def: hypothetical protein # Organism: C.curvus # Pathway: not_defined # 1 307 1 328 328 114 28.0 7e-24 MEEIERLRQIGVKEIANRTHIALDKIKKILEMDFEGLRDRVTTIGLIHILEREYQIDLQK WCEEYESFLKENKKEKEKTEANINFKIMHEATPQNDFNSGLIITLIVVILLAIGAYFYFN SNFMDDSAKAVEKSTQELNADIKETYNEATDEGVIEENKKEKEENNATQSLEIAPNLNLD SSASTPLEEIPQEGIQQEVVAQENLSQEVIPQVETKVEIHPLTNVWVGIVYLDTKQRQSM IVDKTYEVDLKRPQTIITGHGMLEINNNQKVDSYNLARRMYFMVNEKGEFIEVNNAQYRQ YSGGLGW >gi|197325098|gb|DS990368.1| GENE 448 451732 - 451944 84 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|253827415|ref|ZP_04870300.1| ## NR: gi|253827415|ref|ZP_04870300.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] # 1 67 1 67 275 131 100.0 2e-29 MVRRIFFVLLLIFFANSKLFCNSLDFHIISLIGVQDYRVNQKFIQRLFNNQDEFLDGVGQ PNLYKISLAS >gi|197325098|gb|DS990368.1| GENE 449 451994 - 452572 492 192 aa, chain + ## HITS:1 COG:no KEGG:WS0448 NR:ns ## KEGG: WS0448 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 2 191 83 274 276 119 36.0 5e-26 MELELSFEIRQNPAAFMSVLSDVLGAMGYYYFLVKQSIFDNEKYRFVLSMNTEYAIDPVL LQEKLRDYGYSVSRIERQNIRQWVYAIVQDVLKYPKAIPLEKKVPQNSANLKGEYWYSLK EGGKLLVNSSDNVLWYPKIVFFDENLGIIKVVSLEDSVRETSVVIPSGSAFVKISDNYLP IVIKGGLSITLE >gi|197325098|gb|DS990368.1| GENE 450 452583 - 453794 1199 403 aa, chain + ## HITS:1 COG:Cj0150c KEGG:ns NR:ns ## COG: Cj0150c COG0436 # Protein_GI_number: 15791538 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Campylobacter jejuni # 1 400 1 400 400 563 65.0 1e-160 MFDEIEFEKIKRLPKYVFAAINEIKLQMRQNGEDVIDFSMGNPDGPTPNHIVEKLCEAAH KPKNHGYSASKGIYKLRLAIADTYKRKYGVELNPDTQVCVAMGSKEGYVHLVQAITNPGD TAIVAEPAYPIHYYAFILAGANVATFGLKWNEDYELDMESYFQSLKNALHNTMPKPKFVV TNFPHNPTTIVVYKEFYERLVALAKQERFYIINDIAYADLSFDGYVAPSIFEVDGALDVA VEGYTLSKSYNMAGWRVGCFVGNERLIGALQKIKSWLDYGIYTPIQIASTIALNGNQDCV KEIANKYEKRMEVLIESFGAAGWKMKKPKASMFIWAEIPECVKHLGSMEFSKRLLQEAKI AVSPGIGFGHEGDNYVRIALIENENRIRQAARNLKKFLSQFKA >gi|197325098|gb|DS990368.1| GENE 451 453802 - 456204 2242 800 aa, chain + ## HITS:1 COG:Cj1155c KEGG:ns NR:ns ## COG: Cj1155c COG2217 # Protein_GI_number: 15792479 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Campylobacter jejuni # 6 800 5 785 785 594 42.0 1e-169 MAKRCCDHCHLEFDEAVLIQTEIANQKKYFCCRGCEGVYKLLQTQGLEDFYSKLGDQKLE PIKDNKNTDFTQYDSASFLDHYGEKKGDFFEISLILEKIHCIACVWLNEKILSQQEGIVE VHINYTNNKATILFDPRQIKVSQIIQTIQQIGYDAHFYDSRLQETYAKKEKKDYYIKMVV GIFCVMNIMWIAVAQYAGYFSGISQEMRNILNIAGFVLATPVLFFSGAVFWRGAYMAFKY KTPNMDLLVISGTALAYIYSIYASFKGGETYFESVAMIITFVLIGKFLEIRGKKSAIDSL DKLNAQIPFSAMVKVGENFQEKSIESVETGDIIQVKPGERVALDGILLSKEALCDESALS GESLPQEKIKGQNIYSGSLVLNKSFIYEVTKVFKESLMTKIVNLVEDSLNARPKIQEVAN KISRYFSSVILLFALITFGLWHFVWEVSFDKSLMVMISVIIIACPCALALATPIASLVGL GEAFKQKVLFREARFLEVIAKANALVVDKTGTLTEGKLRVVGLKDFGAKTSDFEILYGMV EKSAHPISVALLGYFENLYKKAQVESVEQISTRGIKAQVNGQSYVGGNLELLKESGVMIP KDLQESHNSVFYFAREDCLLAEFSLEDTLKKDAKESIEKIKKMGIDVILLSGDNGSVCQR VAETLGISEYYAKQNPIDKADFIDKLHQKGKIVVMAGDGINDSIALSRSDIAIAMGSGID VAIGVSDIVVLDDSVNGITEAFRIGKRTFRFIKQNLWISLLYNAFMIPLAMLGYVIPLVA ALSMSLSSLVVVGNSLRIKK >gi|197325098|gb|DS990368.1| GENE 452 456286 - 456666 513 126 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418090|ref|ZP_03656096.1| ## NR: gi|224418090|ref|ZP_03656096.1| hypothetical protein HcanM9_02321 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0769 [Helicobacter canadensis MIT 98-5491] tat pathway signal sequence domain-containing protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0769 [Helicobacter canadensis MIT 98-5491] tat pathway signal sequence domain-containing protein [Helicobacter canadensis MIT 98-5491] # 1 126 1 126 126 233 100.0 4e-60 MTKISRRNFLKTTALTAVSLSSLNASYLEVPQTFKQVKYFIKDSEVSYQEAFVNVDNVLV VERDIGDIYAKLKEIFADKALVGSVSSGATFFVIQRMAADYGMHVAYKEKQGDIYTWILA PKGVRL >gi|197325098|gb|DS990368.1| GENE 453 456663 - 458333 2032 556 aa, chain + ## HITS:1 COG:BH2730 KEGG:ns NR:ns ## COG: BH2730 COG0277 # Protein_GI_number: 15615293 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Bacillus halodurans # 18 240 9 218 470 101 33.0 4e-21 MILPRDVTQSDFTAAVAKFEKALGKEWVFSSQEDLELYRDAYSPQWGDDDEPIASLALAP KNVEEVQAIVKIANEFKIPLFPISTGKNLGYGSCAPQQRGQVVVDLKRMNKIIEVDDKRN FCIVEPGVSYFDLYEYVEKNNLNVFLDIPDPGWGSPLGNALDHGWGYSYGMYRDHFGSHC GMEVVLANGEILRTGMGALPKAKTFAENKYGYGPYVDGLFSQSNFGIVTKMGFWMMPKPE HYMLISIKMKKREDLIPAVEILNYLEDSFIVGWPQYFSPLNPPYGKPMNEELKGYLTSKN GLPDMNKIQNYALKNKIPYWNIDVSIYGCKEVCYANLEYIKRRFKVIDGVDISIVQEFDL PLKLEQKKQLKHKVALGIPNMEIFWISTRGEAREPSDGHVWFSPIIPRDGRELLKCQEVY MELFREFGVESPITPFSHPRSWMYRAFCFMLAFNNSRTDQAYNFKVRQMYRAMVKTAAEN GWGDYRAAPTFQDDVMGAYSYNNHILRRFNEQLKDCVDPNGILAPGRGGIWPKNLREERF ANNKRDALMKKEGREK >gi|197325098|gb|DS990368.1| GENE 454 458330 - 458767 493 145 aa, chain + ## HITS:1 COG:no KEGG:ebA299 NR:ns ## KEGG: ebA299 # Name: pchC # Def: p-cresol methylhydroxylase subunit # Organism: Azoarcus_EbN1 # Pathway: not_defined # 61 143 29 112 115 95 56.0 5e-19 MKKAGLIFLALLACALNANSKNADWLPKGESVGVFEYVPNNPMSPAAFSTIDSKTLNANQ KKGQKIYSRWCEACHGEGMPGTNALAVVYKGQDIPALLEDRTDLSVDLVKVFVRYGKHSM PFFRKTEISDEELQYLGEYLSRNYK >gi|197325098|gb|DS990368.1| GENE 455 458781 - 461459 2534 892 aa, chain - ## HITS:1 COG:MTH1001 KEGG:ns NR:ns ## COG: MTH1001 COG0474 # Protein_GI_number: 15679019 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Methanothermobacter thermautotrophicus # 4 881 8 830 844 476 33.0 1e-133 MFHDIPLQELFTKFQSDQENGLTSKQALENKQKFGANIFEKSPPPTLTKQLLEALKEPMV LLLIFAAFLALGINIYEYLYHNQSNFLECIGIFIAIFLSVAITLIMENKSQKAFEALNAI TQGNTIKTLRDGEVKLIPQEEIVNGDILLLETGNKIPCDCRIIHSQSLMCNESSLTGESM PSIKNPILSNHTPNNTYENMLYSGCFITQGNAKAICVAVGNHTEFGKIAKALDQTIQTTT PLQEKLQKLSGKITIFGASAAFLAFLIQVIFFILRDTINFENITQAFISSIVLIVASVPE GLPTIVAISLALNIIKMSKQNALIKKLIACETIGCVNIICSDKTGTLTQNQMSVEHSFIQ DRIFEFHSHSLQNLQTSPIKDSAFFMLHNAALNSTADISQKGEKYDFIGNPTECALLVFG EKIGFHYKEIRKNFKILHSFPFFSQTKNMTSLVDFKGKILCLSKGSPEKILSQCKMMPCQ DALKINKQILYFQNLAYRVIAFAHKEITDDRDVKDRELLESQMIFDGFVAISDPLRPEVY EAIMDCKKAGIDVKILTGDNLSTAKAIGNQLHLLDHNSIAIEASELENLNQKELLQILPK IKIIARSTPDTKMQIVNILKSQGNVVALSGDGINDAPALKNADVGIAMGISGTEVSKAAS DIILLNDSFATIVKAIEWGRGIYQNFQRFIQFQLTVNLSSVMIVLFAVIAGLTAPFSALQ LLWVNLIMDGPPALTLGLEPISKNLLAQKPIKRNANIITKDMLILIIINGVFIAFVCLLQ YFTNFLGATPEEKSSVLFTLFVIFQLFNAFNARELHNQSIFKNLTNNRLMLGVFILTFAL QVLIVEFGGEAFKTTPLDLIMWVKILFVGFSVIIVGEIVRFLLKVSRKNNLS >gi|197325098|gb|DS990368.1| GENE 456 461727 - 462353 413 208 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 4 192 5 201 201 163 41 1e-38 MFNLRKLPFNEIQGFISKETCEFHYGKHHQTYINNLNNLIKGTEFESASLFEIVTKAQGG IFNNAAQVYNHDFYWDCLSPKETPLSNELQEAINESFGSFDKFKETFLQSATTLFGSGWC WVVYNPNSKKLEIVQTSNAQTPVTQGLIPVLVVDVWEHAYYVDYRNARPAYLEKFFSHIH WDFVSKSLEWAKKEGLNSVNFYMNSLHA >gi|197325098|gb|DS990368.1| GENE 457 462430 - 462750 592 106 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418095|ref|ZP_03656101.1| ## NR: gi|224418095|ref|ZP_03656101.1| hypothetical protein HcanM9_02346 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0774 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0774 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 106 17 122 122 113 100.0 5e-24 MAVSPISNVNYINQNSQVSSIQQANTQVKLDFQSMVNLQEMQDKQNEVQEVRPTEETLKT NEDKEGNGKQEQENQEATQKTSKKEDSQDEIQTNEEGLIQHLNISV >gi|197325098|gb|DS990368.1| GENE 458 462761 - 463174 413 137 aa, chain - ## HITS:1 COG:HP1392 KEGG:ns NR:ns ## COG: HP1392 COG1293 # Protein_GI_number: 15646002 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Helicobacter pylori 26695 # 20 134 318 432 435 112 47.0 2e-25 MVQNVTNLNDLQILDSNSQKEAKQKKNSKSFESFFIEGFKVSIGKNEKENIALLKEAKAD DIWMHIRDIPSSHLIIHCGKNKIPDIILQKAAKILVGFLKSFSGNYEVDYTKRKFVKITQ GANVIYGKEQTLQITKR >gi|197325098|gb|DS990368.1| GENE 459 463596 - 464471 780 291 aa, chain - ## HITS:1 COG:Cj1349c KEGG:ns NR:ns ## COG: Cj1349c COG1293 # Protein_GI_number: 15792672 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Campylobacter jejuni # 18 290 17 285 435 100 31.0 3e-21 MNLSTLKKFALYLNDSPKKLRSIKRIGDNLFKLDISGEIFYFDLSKSKSSIYLTQDQLIP PKLYNAPFDKSLQKLCYNAQIKNAKVDGDNRILQLFLETQNSYKTSITLLQAEFTGCYTN LILLTPNFIVIDALRHITKEQSFREVKISRPLLPLPQPDKKPILKDEGELLETLKNNFLK IKENELKQKIQKSSTHITQKIKQLQYFLKNLENKQELEKTAQNKSNYGKLILQNLYLYPN FKDTEIILQDTKITLPPKATSLSHAAQIFFENSKKLSKKAQNIHLQEENFS >gi|197325098|gb|DS990368.1| GENE 460 464481 - 466031 1539 516 aa, chain - ## HITS:1 COG:Cj0642 KEGG:ns NR:ns ## COG: Cj0642 COG0497 # Protein_GI_number: 15792002 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Campylobacter jejuni # 5 515 1 507 507 258 40.0 2e-68 MQKILIKKIVIKDSPAFKVACFEPSPFFNVFSGASGAGKSVLMESILALFGLKESNAQTL EATLELYGIPEEFQGLIDEGEVILTLTKKDKIRYFLNAQNIPKKKITEIFAPFLKHLGTK SYNSFKEENLFFALDSFCSTQDSKHKNFLEDYQNAFSAYQNAKNTLKKLQEESLKVNELK EFLQFEIQKLETLNPKKGEYEELLLLKKEFSKKEKIAQSLQEIQGFLSQTHKISNFLNLI DCKNDSILNALNELETICQQESERLSEIESIDPETILNRIEALSALKHRYGGVDEAIETL KNKKEELAKYENLDILLKESQNALNQCQESLKKSAEILLKSRNSNLPSFLKALNATLKNL KMPPANISLQEISLDLWGILGNVNFNITLNTELKNLSAGEFNRFSLALLLTQNTQAKNQS IIILDEIDANLSGEESQGVAEVLYQLSQNYQIFAISHQSHMPSLAHSHFLVQKQPQGSQI TLLDKEGRIYEIARMISGNEITQEAIDFATKRLQNF >gi|197325098|gb|DS990368.1| GENE 461 466031 - 466879 817 282 aa, chain - ## HITS:1 COG:Cj0641 KEGG:ns NR:ns ## COG: Cj0641 COG0061 # Protein_GI_number: 15792001 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Campylobacter jejuni # 2 280 8 286 286 213 39.0 3e-55 MKAIHTLGVILRPSTPELKEYFLEFQSLAHSLGFEVLLDSISGGMINRNGLNFQELCQYC DALISIGGDGTLISTARRSFSYQKPILGINMGHLGFLTDLQKHEVKSFLPNLKTGNYNIT NHMMLEGKIDNTVSFFALNDIILARPNDASMIHLKASIDGNYFNSYYGDGLILATPTGST AYNISAGGAVVYPFSHNLLLTPICAHSLTQRPLILPANFTIDIELGEQGICNIIIDGQEN KTLKSGQKISIKTKKDGAKLIHNIHWDYFKILKEKFHWGDYE >gi|197325098|gb|DS990368.1| GENE 462 466876 - 467556 761 226 aa, chain - ## HITS:1 COG:no KEGG:WS1624 NR:ns ## KEGG: WS1624 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 57 226 51 221 221 174 53.0 4e-42 MSKENESVELSFEEKPKKSHFLTYLLLLILLIIIVFGLGYYLLNNEVGKNVINNLQNSLE SQEIQPSNQEYAKDEEIQRLQNALIQKEKELQSLSQSFDNSTTQKPTTLQLRYTIKPKKQ IIAECFSMQTGKWEIPQGCLLSLATKISKELENDKKVVAFEVQGIVDNNPYKGLSPELKQ EGLASFRAWNAIREINKKLPNVTAFEGPSLELKDQRGYRIKAYFVE >gi|197325098|gb|DS990368.1| GENE 463 467558 - 468373 713 271 aa, chain - ## HITS:1 COG:HP1336 KEGG:ns NR:ns ## COG: HP1336 COG2214 # Protein_GI_number: 15645949 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone # Organism: Helicobacter pylori 26695 # 2 264 3 252 253 154 37.0 1e-37 MKVELLEPYIQISIEKESRFLKRAIDFAYKHFSKAYRLSSSVLILDDGERYKKDYFLNWA YHVAMQEENKKNNPSFQAIIDSSHLPIRIKMIESKAILEHIIVSLQILHSSLTRTQVCLR LSRPNRLAKRYLTSLFQDFVISHTKQEIFLDSSSPYFWEKLIAMLSQKIIHNIVLDFDYE TFKTNNTFECFEPYTTKEERLLKKSYRILGCKEDEEFESVKNRYIELAKIYHPDNVYGQD SKIIEGYSEKFRIINEAYENIKSNFKCYLRS >gi|197325098|gb|DS990368.1| GENE 464 468373 - 470418 1362 681 aa, chain - ## HITS:1 COG:Cj0412_1 KEGG:ns NR:ns ## COG: Cj0412_1 COG0699 # Protein_GI_number: 15791779 # Func_class: R General function prediction only # Function: Predicted GTPases (dynamin-related) # Organism: Campylobacter jejuni # 54 187 62 196 196 113 48.0 2e-24 MLKQYLKECQEILQKNSQTTKIQKLLLDCQNNLNPNDYSLDFFGDLYNKNQEAMQIAIIG QFSSGKSTFLNALLGENILPTGITPITSKVCKICYGDEYILEVIYKNGHKIPQNIDFLHK LSRQNSQNIDHFCLYAPILLLKEINFLDTPGFNSQNQEDTNTTLKILENVDGIIWLTLID NAGKNSEKQLLKEFIKHYAQKSLCVLNQKDRLKTQEEIDLSVQYAKEAFSGIFAEIIPIS AKIGLQANLNSPQKILKNLLSNLSSKIQNLSHIEDKDTLLSTLESDFKATSKSIQNTNQS NTDYTNLIKQSNMQAIFDFITHTIKPKATLSKEYSTLKKLKEMHILLHYQYHKTLLCYKS LAKIFTNHLHDTILKSQTHQEKQQQIFDNLYKTLDLLLDSIAQNIYNHLEKTALDFPIKQ KSLFKEKIILQSKEVTLLPLEQIKIRLQNQDSSFQKDFKALSAQIHNFCNLFRDLVEEFS KDLKSKAKQWQDKEVQKQEIYKFAPNSQSFKDLQHFSQQYYECLIIDFDKNDLLAISNLQ SQLHFLSHFLTLNYNNAIESALNKLDLKLKNSIAKHQENQDFALFSPTLENIRDYLNESF CFEPLQAQLFGPMNLLKKTYSQFLKGLETLTQNKNQVINDKMTNLKIEIDKIIKNLQIIK DFMNMEPELLISKQDTKNKEV >gi|197325098|gb|DS990368.1| GENE 465 470411 - 472687 2079 758 aa, chain - ## HITS:1 COG:Cj0411_1 KEGG:ns NR:ns ## COG: Cj0411_1 COG0699 # Protein_GI_number: 15791778 # Func_class: R General function prediction only # Function: Predicted GTPases (dynamin-related) # Organism: Campylobacter jejuni # 142 410 124 388 392 172 43.0 2e-42 MEWLEENYNQINPLGNLNILNLPPNSCSDILAILLSLSPKTFNLFWQSQTLQKISQNYLQ ENLSFKLIKQAQLSLLLQLQRQSTNHKIKTILQETLNKLETLNQNQMIEESHFKNLTQFL SKIPLDSLQTKTTAPASSIQHFENFFEESLAILENQMHSIPMFVDIQKSLQNLLTKTKSQ HFSIGITGVLSAGKSTLLNALLGKEILGSSTIPETASLTTLKYNETSYAKINFWNKQEWE DLKNTLDSSYLESLLENQEFQSFLSQYILDSNPKQSLEIPFEELPKFTSANYPSKLCNLI KETTLFTPLQFLQNQVEIVDTPGLDDPIIQREEITKNYLCQCDLLIHAMNASQSATQLDI NFILEALQNSNISRILIILTHADLLSQKDLLQALDYTKETIQSRISALQEGALLIKRLDF LCLASYPALLCQTNPKKAKELGYTLQESNFNALIEYLQKTLIGSNSTKAKDLIYLATQGF KKAFLALQENLNLEKTLLFSSRESILSLIESTKQEAQKARDELNSTKQKLQTIQQQLQDY AKTATNLLSQKLLEAQNILIERIFEDIMYDYNHNKTPSKERVEKILLQGLKDFLIDILRV YQYNFSQKISQLISQFALNHSLKLSQIKLNESLILKVKMQILNHISLKHKDTKLLNSLQN AFSLGFESFKEAIYSQSQTLQSQLFCNLQNHFNEILEESELILQTKEKILQKSLEDSQNN SENKAKKEQEILTLQEQIKNHLNQLQNIQEYATRTSNA >gi|197325098|gb|DS990368.1| GENE 466 472692 - 473837 1028 381 aa, chain - ## HITS:1 COG:ECs2302 KEGG:ns NR:ns ## COG: ECs2302 COG0477 # Protein_GI_number: 15831556 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 8 370 39 407 417 109 26.0 1e-23 MQKNYHLLIIMLSAMVTISTLYITQPIQPLLIEEFTISTTQVTLFTSIPLFMLAIAPIFY GYLLEKFDTRLILVISLALLGIFQCLLCLSQQYSSFLLLRIGESLAIPAALTATVTCLTR IDSSNKYIGVYVASTIFGGVLSRVGGGLLTTIFSWKFTFLALGITSFLIATLAIKLPNTN AKIKNAKITFRIFLDFLTDKRYFLLYCGAFLILFCFQGTLNFMPLYVSSLDPNTTAAQIG FMYLGYIIGILAALFSQRIVKLLGGEIKAISVGFVIFACACFMMIYGDFWQLFFAVFVLS AGMFIINSTLSSLINTISANQKGITNGLYLASYYAGGALGTTLPTYIYRPFGWNALCLTL GVILFLSALIFYQSQKYFIKG >gi|197325098|gb|DS990368.1| GENE 467 474030 - 474476 729 148 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224418105|ref|ZP_03656111.1| 50S ribosomal protein L9 [Helicobacter canadensis MIT 98-5491] # 1 148 1 148 148 285 100 3e-75 MKVLLLQDVKALGKKGEICEVKDGYGKNFLIAKGMADFATNEVINRYKATQKKMAQQAAE NKALMEMAAKKIEEITLKISQKVGANGSLYGAITKEDIAEELAKAHRLEIDKKSIELKNP IKSTGVYEVEIKLGGGIHANLKIDVEAL >gi|197325098|gb|DS990368.1| GENE 468 474476 - 475012 744 178 aa, chain + ## HITS:1 COG:HP0515 KEGG:ns NR:ns ## COG: HP0515 COG5405 # Protein_GI_number: 15645142 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Helicobacter pylori 26695 # 1 178 1 180 180 270 77.0 1e-72 MFEATTILAYKTENGAVIGGDGQVTFGNCVLKGNATKIRTLYHGQILSGFAGSTADAFSL FDMFEGILENKKGDLLKSVIEFSKEWRKDKYLRRLEAMMIVLNKEKIFILSGTGDVVEPE DGRIAAIGSGGNYALSAARALDRFGGGQMQPKDLVLESLKIAGELCIYTNQNIKILEL >gi|197325098|gb|DS990368.1| GENE 469 475036 - 476376 1073 446 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 7 446 8 466 466 417 47 1e-115 MENYIAMTPKEIVSYLDEYIIGQNDAKKIVAIALRNRYRRLQLPKEIQEEVMPKNILMIG STGVGKTEIARRMAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLVVASINLVKEEHRQ KNAQGIQKYVLDKIVEKLIPPLPKGASEQKIEEYQKASEKMRQKVENGEVDHLKIEIEVP KRAFEIEDGNMPAEFAKVQETIARVFIASPKENPKKEVSIKEAKEILKIEASEALLDLES IKQEGLKRAESSGIIFIDEIDKVAVSSNAQGRQDPSKEGVQRDLLPIVEGSIVNTKYGSI KTDHILFIAAGAFSLSKPSDLIAELQGRFPLRVELNSLDEEVLYKILTQTKNSILKQYEA LLAVEEVTLKFSEEAIRALAHYSQLANEKTEDIGARRLHTVVEQVIEEISFEAENYKGQE VEITESLVKEKLDNLVANSDIARYIL >gi|197325098|gb|DS990368.1| GENE 470 476385 - 477269 902 294 aa, chain + ## HITS:1 COG:HP0517 KEGG:ns NR:ns ## COG: HP0517 COG1159 # Protein_GI_number: 15645144 # Func_class: R General function prediction only # Function: GTPase # Organism: Helicobacter pylori 26695 # 1 290 2 295 302 261 48.0 1e-69 MESRAGFVAVLGRPNAGKSTFLNALLGERLALVSHKANATRKRMNLVLMQEEAQIVFVDT PGIHKQEKLLNQYMLKEAMQAMQDCDLLLFLAPVSDKIDFYEEFLQSAKNKPHLLLLTKS DSVIKEELFCKMQEYQKYQNYYQALIPISYKDLNSLKSVVRKIAEMMPPNPYYYDPEILS PNSTKEIVKEMIRESCFENLSDELPYESDVMVNLYQEKRDLDYIKATIITHKESQKAMVI GKEGKTLKRIGKSAREKIEKFINKKVYLELLVKVMPGWSKQKESLKQVGYDFED >gi|197325098|gb|DS990368.1| GENE 471 477282 - 478277 1168 331 aa, chain + ## HITS:1 COG:HP0518 KEGG:ns NR:ns ## COG: HP0518 COG3034 # Protein_GI_number: 15645145 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori 26695 # 21 331 25 330 330 317 50.0 2e-86 MKIIWLLLIAVFSYANEYDWIQVYRENGVEALEKKIDAILQTQDYWKEVMKDKDTRFGYY EDLKYLFIASKDAPKLESPKLKLYALENGKWVERLNANSLVGSKGGNKQKEGDLATPIGV YTLEKRLVNLDQYYGPLAFTTSYPNLYDRLQKRTGYGIWIHGMPLNGNREELNTRGCIAI ENNLLTTVDQIIDYRDSLLITFSNEIKEVKKQDLEIILSNLFQWKEAWKNNVIDTYLSFY GEDFIRYDGQKYNAFAAVKRQIFGKGEEKNIQFNKINISPYPNEENKNLFKVSYHQDYKA YLNGKLNYSSNGDKELYVELRNGKMQILAEK >gi|197325098|gb|DS990368.1| GENE 472 478263 - 478880 262 205 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|162456259|ref|YP_001618626.1| putative ribosomal protein [Sorangium cellulosum 'So ce 56'] # 1 203 6 204 207 105 34 4e-21 MRLILATSNQDKIKEIQAIYQNLKDALEILAWDTLITPFDIEENGQTFQENALIKSKSVF NTLKEKNLLTPKDIVLSDDSGICVDALDGKPGIYSARYSGGDSQANLEKLLAEVAKLPNQ TSSAYYCASIGISHFYGDFSTHGFMYGDVIAHKRGKNGFGYDPMFIPKGFNQTLAELSNE EKNAISHRTIALKRAEYILRSLLFC >gi|197325098|gb|DS990368.1| GENE 473 478956 - 480317 1330 453 aa, chain + ## HITS:1 COG:HP1181 KEGG:ns NR:ns ## COG: HP1181 COG0477 # Protein_GI_number: 15645795 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Helicobacter pylori 26695 # 6 438 1 434 443 317 44.0 4e-86 MKEHSLIKQTIPLSIILAGRFFGLFVVMPLLSLYALSLEGMNATLVGIAIGGYALTQVLF QIPFGFLSDRFGRKSIIALGLVIFILGSIVCAMSDNIYMLIIGRFLQGAGAIGGVVSAMI ADLVREEKRTKAMALMGATISLSFTAALILGPILGAYFGVASLFWITAILGVLSLGILIL FVPEAPKIHYSFASSSDNYKTILKNKNLQIMNITNFLQKSFMTLAFLIIPIALTKGFEMP KEDLYQVYIPASLLGFFAMIPAAIFAEKKGKFKSVLVIGILLFMAAYLLMLGQNVWVFVV GVLIFFIGFSVHEPIMQSLASRYCKAHQKGSALGIFTSFGYFGSFVGALIGGQLYEHFGM VAISIFVVSVSFLWILLLMLLASPTAQKNFYLPLRENVKNEDLEILAELKGVLEWFINQN EKVAVIKYNKNLILEQEIKKFIATNLQEKIKEN >gi|197325098|gb|DS990368.1| GENE 474 480326 - 481099 750 257 aa, chain + ## HITS:1 COG:HP1182 KEGG:ns NR:ns ## COG: HP1182 COG0037 # Protein_GI_number: 15645796 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Helicobacter pylori 26695 # 6 254 4 252 253 316 60.0 3e-86 MENNIEISKKILKIAGNTNAEFGLIKEGDRVLLGLSGGKDSILLATLLARLKKYAPFNFE FKALTVDYGRGGEYEYIFEYCEKLGIPYELYRTDIYKILEENRREGSVYCSFCSRMRRGA LYSKALEGGFNKIALAHHLDDAAESFMMNLTYNGALRSMPPIYKAQNGLYVIRPLIFVRE RQIIDFIAKNNIYIAPDCNCPIMWQSDDKRPYAREKTKQMLKEMEEANPDFFTSLKVALG NVHLNSLFDKKYLDKQD >gi|197325098|gb|DS990368.1| GENE 475 481131 - 482336 1265 401 aa, chain - ## HITS:1 COG:TM0274 KEGG:ns NR:ns ## COG: TM0274 COG0282 # Protein_GI_number: 15643044 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Thermotoga maritima # 1 400 1 401 403 483 59.0 1e-136 MDILVINCGSSSLKYQLINTDTEVVLASGICDRIGINGGQFTYKPQGGEKSIQNIEMKDH EVAIKIVLEALTNPKTGIINSLSEIKAIGHRIVHGGEHFTHSAIITDEVISHIEECADLA PLHNPAHLLGIRACQALMPSTPMVAVFDTAFHQTMPPKAFIYGLPYEYYEKYKVRRYGFH GTSHSYVSKRTAEFLKIPLENSKIITCHLGNGSSICAVENGKSIDTSMGLTPLEGLVMGT RSGDIDPAVIDYIAQKENLSTKEIMNILNKKSGVLGISGLSSDFRDLLAADEQGDLKARF AREVFAYRVAKYIGSYTAALTGVDAIAFCAGVGENAKFIRGKIVSHLQFLGITLDEKANL ATIGVEGIISTPDSKVRVCVIPTNEELMIARDTKTLVSKIK >gi|197325098|gb|DS990368.1| GENE 476 482346 - 483347 1214 333 aa, chain - ## HITS:1 COG:MA3607 KEGG:ns NR:ns ## COG: MA3607 COG0280 # Protein_GI_number: 20092407 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Methanosarcina acetivorans str.C2A # 3 330 4 328 333 331 54.0 1e-90 MGFIETIKEKAKANLKTIVLPETNDIRTLEAAHKVLEEKIANLILLGDEATLKAEAAKSN LNLDGATFINPTSCDELESYVELFVKLRGHKGLSEKSARALLLENPLYFGVALVKSQKAD GMVAGAINSTADVLRASLQILRTKKDSKLVSAFFLMVVPNCDYGEKGIFIFADSGLVQNP NAQELASIAIDSAKSFQSLVGKDPIVAMLSHSTKGSAKHPDVDKVIEATKLAQSLAPQIA IDGEFQLDAAIVPSVGKSKAPESKIAGYANVLVFPDLDSGNIGYKLTQRLAKAEAYGPIT QGIAAPVNDLSRGCSSDDIVGVVAITALQAQQK >gi|197325098|gb|DS990368.1| GENE 477 483438 - 484706 886 422 aa, chain - ## HITS:1 COG:Cj1535c KEGG:ns NR:ns ## COG: Cj1535c COG0166 # Protein_GI_number: 15792843 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Campylobacter jejuni # 30 416 22 401 406 292 45.0 1e-78 MIHLENTYQSSPYYDSSFLSKDLLQPCFQKILAEKENGISGYYHLPFQENLDIFAYLRDN YCFLDNLKNLVIIGIGGSSLGTKAIDAILSYQHNRRKLKLHFLEHTDPIMIHKELQRVKW EESLFIVISKSGLTIETTSLLKYVLKHFNLLDPKRKNHLLTISDEDSPLFHWSKEQKIQN FTIKPNIGGRFSVLSTAGLLPLGILGYNLQSLLKGAQNMSQYFFRDPTNEILKKAVFLAH CETHYPINVLFSYSSVFRHFNAWYVQLWGESLGKLDSTGQKRGLTPIALIGSIDQHSFLQ LIMQGPQNKSVTFLSVEKFSQKPLYIPKINLKGLESTDFVNGTSFNKLLQLQCIATKESI IAENVPTDSITLDLLCEESVGELIFYYELLTSCVGVLLQIDTYNQPGVEFGKKILREKFT HI >gi|197325098|gb|DS990368.1| GENE 478 484703 - 485698 1072 331 aa, chain - ## HITS:1 COG:HP1346 KEGG:ns NR:ns ## COG: HP1346 COG0057 # Protein_GI_number: 15645959 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Helicobacter pylori 26695 # 1 330 1 330 330 375 56.0 1e-104 MATKVAVNGTGRIGLCVCKILGQRDDLELVAINTTMPIDTLIHLLKYDSVHQSSEITKVS ENQICIGKQKNIQIISTRNIQETHFGQYGAEIVIECTGAFNDINKASLHLYDGIKRVVIS APATDTPTFVYGVNHLSYANESVISNASCTTNALAPLTKILHENFKILSGLMTTIHSYTN DQNLLDSKHKDLRRARSAALNMIPTSTGAAKAIGLVMPELKGKLNGFAIRVPTPDVSLVD LTCVIEKPTTKEIVNETFKKASQESMKNLIFIDEEKLVSSDFIGSPYSAIFIPDCTTIVN DNQVKIVAWYDNEWGYSTRLVDMVHFVGQSL >gi|197325098|gb|DS990368.1| GENE 479 485932 - 486222 481 96 aa, chain + ## HITS:1 COG:HP0835 KEGG:ns NR:ns ## COG: HP0835 COG0776 # Protein_GI_number: 15645454 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Helicobacter pylori 26695 # 1 95 1 94 94 81 67.0 3e-16 MNKSEFVDLVKEVGEYETKKEAEKAISAFTAAIEKALSKKDGSVELVGFGKFETVLQKGK EGTVPGTTKKYKTKDKFVPKFKAGKGFKDAVAAAKK >gi|197325098|gb|DS990368.1| GENE 480 486383 - 487087 984 234 aa, chain + ## HITS:1 COG:Cj0034c KEGG:ns NR:ns ## COG: Cj0034c COG2859 # Protein_GI_number: 15791433 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 3 234 2 233 233 254 56.0 8e-68 MSKISAIILGFFFVVGSFIMVFGASKAIVDIKSMERSVVVKGLSEKEVLADVMIFPINFT RASNDLNVLYQELENDSKKIIEFLQKIGIQAEEITIEAPKITDKVGSAYGESQSIVYRYS GEGRVLVYTNKVDLGRRALEKLTELGKEGTVVRVDDYEIEYLYTKLNEVKPEMVEEATFN AREVAQKFAQDSQSTLGKIKKASQGQFSVSNRDRNTPHIKKVRVVSTIEYYLQD >gi|197325098|gb|DS990368.1| GENE 481 487084 - 487656 326 190 aa, chain - ## HITS:1 COG:HP1473 KEGG:ns NR:ns ## COG: HP1473 COG1040 # Protein_GI_number: 15646082 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Helicobacter pylori 26695 # 1 188 1 189 191 143 45.0 2e-34 MRCLICGNFTFKTLCNPCFEAIAIQPRVRILDNLKVYSFYDYQEIQFLLHAKYQIIGSKI YHLLAKKAYLFLKQTLQSPLKAYGIGIDDKISKQGYAHNAIFLKYFKKLGITPLYHTLLA QNSVSYAGKDLKFRQNNPRNFYLTQNIAHKNIILFDDLITTGLTLKEAQNLLANKGANVL MAFVLSDAKY >gi|197325098|gb|DS990368.1| GENE 482 487644 - 488228 583 194 aa, chain - ## HITS:1 COG:Cj0766c KEGG:ns NR:ns ## COG: Cj0766c COG0125 # Protein_GI_number: 15792104 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Campylobacter jejuni # 1 187 1 191 192 167 50.0 1e-41 MYVAIEGIDTSGKSTQIQALKLFFKKAIFTFEPGATNLGVRLREILLQDSIQLDSRAEML LFLADRAQHANEILQSHANNLIIADRSLISGMAYAKDFDFDTLKTFNLFATQGILPNKVI ILELQKDDLQKRLNSKGNDKIEQRGLEYLLSLQERIKSITQKLSLEHRIINANLPKDSIT KQIVDFIGKENCVV >gi|197325098|gb|DS990368.1| GENE 483 488212 - 488712 324 166 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 3 162 4 159 164 129 40 3e-28 MAKIAIYPGTFDPITNGHLDVIQRACKLFDGLIIAVAKSDSKKPLFTQEERIKMVQFAIN ELGETSCTLSVSGFSHLVADFAREQESNILIRGLRAVSDFEYELQMGYANASLNRKLETI YLMPSLQNAFISSSVVRSILLHNGNISHLVPKSVNDFIRNHYVCRH >gi|197325098|gb|DS990368.1| GENE 484 488713 - 489717 975 334 aa, chain - ## HITS:1 COG:HP0581 KEGG:ns NR:ns ## COG: HP0581 COG0418 # Protein_GI_number: 15645206 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase # Organism: Helicobacter pylori 26695 # 4 333 3 335 339 336 54.0 4e-92 MNTITLQSPFDMHLHLRDGEMLQNVIEYTASCFSAALVMPNLNPPIFDVQSALAYKQRIL QASQSKDFEPLMSLYLNENLNKEELQTAKNNGIFILKLYPKGSTTGSENGVSEILSPKIL EILEIAQEIGMILSIHGESNGFVLEREVEFHPIFEYLATNFPKLKIIFEHLSDRRSITLV EKYENLFATLTLHHISLNLDNVIGDMLNPHYFCKPILKTKKDQESLLQIALNAHKKFSFG SDSAPHPKINKESKKGAAGIFSAPILLPALAQIFDTHNALENLESFVSLNASQIYNLPRT NKQITLIKKPMQIKEELSGIVPMFAGNTLEWSLA >gi|197325098|gb|DS990368.1| GENE 485 489717 - 491084 1646 455 aa, chain - ## HITS:1 COG:jhp1196 KEGG:ns NR:ns ## COG: jhp1196 COG1109 # Protein_GI_number: 15612261 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Helicobacter pylori J99 # 4 453 3 458 459 476 53.0 1e-134 MEKLTIFREYDIRGIYNQDLTQDNVIKIGFLLGEELKKRGGKTLGVGYDARVHSPIIFDW LCSGIGASGITTYNLGQIPTPVGYFALYTDFNGLSLDGSIIITGSHNPPQYNGFKITLLK QPFFGEDIYKLEQDFYSLQTPKVKIETPQKLNALEKYIDFLSQEFQHLKGLNIPINLDCG NGIAGVGIVEILKKLELKFEGLYLNPDGTFPNHHPDPSEEKNLEDLKKLVAKKGGIGFAF DGDGDRLALIKGDKVYKGDELAIIFAQKIPNPIIIGEVKCSLNMFESINKIGKAIMYKTG HSNLKIKLKETNAHLAFEVSGHIFFNDRYFGFDDATYAALRVLELIKEDGLEFDKILQTL PKLYSTDEMKIPTTEEKKFQIIQQLKETLKNPPKDFPEIVEIIDIDGLRVIFKEGWGLIR ASNTTPMLVTRFEAKNELAKEIYQNALLGLLKKDL >gi|197325098|gb|DS990368.1| GENE 486 491093 - 492316 993 407 aa, chain - ## HITS:1 COG:Cj0067 KEGG:ns NR:ns ## COG: Cj0067 COG0402 # Protein_GI_number: 15791459 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Campylobacter jejuni # 1 405 1 406 409 253 41.0 6e-67 MYLIGADSLLLCDESFTTLKKGGIYFNEKEILEIDLYENLQNKPAKYQQYYHNCVITPTL SNLHLHLEFSQNKGVLEFGNFGKWLDSVIKNRDSLMDDSLQTQMQQEIQNLLKSGVGFVG AISSYGYDLEILANSPLRTFYFNEVMGSKPEILDALYQNLLARLEESKKFASQKFFPALA IHSPYSVHPALLKQALNLAKTQNLPLSVHFLESKEEREWLESKTGYFQNFFKKFFNAQMQ PFYTPSEFLESLKTLKPYFVHCLEATHQELEAIAKMQGHIISCVKSNRLLNNKVLDLNLC KKLGIHPIFATDGKSSNDSLSLLDELRTALYVYANEDLESLAKTLLLGVTYYAHKNNPLG IKTGSLQKGFLPDFAIFKLNTKHQSALDLLLYAKEAKALYISGKQII >gi|197325098|gb|DS990368.1| GENE 487 492316 - 492528 230 70 aa, chain - ## HITS:1 COG:no KEGG:WS1478 NR:ns ## KEGG: WS1478 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 2 58 216 272 278 65 49.0 6e-10 MPVVGVHALNASSVDLLVRFWVKTENYFQANITLPQKVKATFEQQGIEIPYNKLDININP AQTPLLEGKK >gi|197325098|gb|DS990368.1| GENE 488 493930 - 494385 596 151 aa, chain - ## HITS:1 COG:Cj1195c KEGG:ns NR:ns ## COG: Cj1195c COG0044 # Protein_GI_number: 15792519 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Campylobacter jejuni # 1 149 1 147 392 57 33.0 7e-09 MLIKGAMICDANGEYKGDIRIKEDKITEINRSIIAHDSEEILEANGLVAMPSAIDLNVQL QNFNKENLINLSHKAALGGISLLALTPNFPNSFSAELGMELLNTLQDSFEAQILGLIQNS FENISTLHKKGAKGIYAKSSQDGNALRIACG >gi|197325098|gb|DS990368.1| GENE 489 494453 - 495529 859 358 aa, chain - ## HITS:1 COG:ECs4507 KEGG:ns NR:ns ## COG: ECs4507 COG0859 # Protein_GI_number: 15833761 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Escherichia coli O157:H7 # 2 287 7 303 352 111 27.0 2e-24 MKILIIKIAYIGDVLLTTPLFYNLKQYYGESCTLDILVNEGTQGILSMQYLNAIHTLKRS QNKLQRIKDDLKLLRTIKKAKYDMVISLTAGDRSAFLAFWSGAKIRVGFPPKAFWAKNIY TLKLTQKYQHTLENNLEALRILNIPILSKKVLPKISQETKKLHNLPQTFIHLHLFSRCFY KCLNDSFCAKIIDFITHHYSTNCILTAANDPKESKKLQNILKLCQSKPLFFDGTLTLAEV SLLNSKALAFIGVDTGIMHLSAANDTPTFAFFGPSYVKVWGPWDNALESSTYTNSNGIQQ MGKHYVYQEDFQCVPCGKEGCNDSQKSDCLLNKLNETKALQSLKGFLDPLFQSKLNNK >gi|197325098|gb|DS990368.1| GENE 490 495526 - 496434 906 302 aa, chain - ## HITS:1 COG:jhp0265 KEGG:ns NR:ns ## COG: jhp0265 COG1560 # Protein_GI_number: 15611335 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lauroyl/myristoyl acyltransferase # Organism: Helicobacter pylori J99 # 4 299 30 327 328 168 32.0 1e-41 MKRFLLFSFLKCLGYLFLYMPHFLRLGFAKTIALILFLLDRRRKFDLLTNLDFAYDHTLS PLQKKEILKTNYLNLVYNSISFFMLSVSNKAQILDSIKIDKPKIIQKLLETNTKIVFVTA HFGNWEYTTPAFSCYFNHKITAVARMTPYPLINEYLIKVRSKFNITILDKRGAAIPLAKA LKKDGVVGIVTDQNTTSKEGELVDFFGKKVRHTPIASLLARKFDAKIIHFIAYYSKDYRK ILIKILPPIEFQKTDDAQSDIHNLTQIQSDILEQIIRENPKEWLWFHKKFKNQYPEIYKA KK >gi|197325098|gb|DS990368.1| GENE 491 496431 - 497432 705 333 aa, chain - ## HITS:1 COG:jhp0264 KEGG:ns NR:ns ## COG: jhp0264 COG0859 # Protein_GI_number: 15611334 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Helicobacter pylori J99 # 5 332 1 335 336 248 44.0 1e-65 MLKPLKIAFVRLTAMGDIIHSASILPLLHQTLSQHYQPTFHWYVDLEFQEILQDSPYINK LIALPLKKSLKNKNFKALYAIYQTLRLESYDIVIDLQGLLKSAIIGKFLVSKQYIGFSFK SAKESLASLFYNKTIQIPYQEHILLRNATLAFSAFNLPIPDIQTLLNPKSFLGFNPNLAP KLNQNSAKILLVLETSKPNKTYPQHLFLELTKLFNTANLSPILLSHKSTITHSTLNFQSF SNLSLNAIKALVAQMDLVIGGDTGITHLAWALKRPSITLFGATPPSRFSLQTKQNCYLMA NPNANYDKQDFSIQKISPKEIFDLAITLLKGKI >gi|197325098|gb|DS990368.1| GENE 492 497426 - 498883 1282 485 aa, chain - ## HITS:1 COG:HP0278 KEGG:ns NR:ns ## COG: HP0278 COG0248 # Protein_GI_number: 15644906 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Helicobacter pylori 26695 # 1 484 1 483 484 429 50.0 1e-120 MAKITAIIDIGSNSARMAIFEKTSHFGFHLLYETKSKVRISESTYEHNGFLQEIPMQRAI DALQDFLWIAKLHKTRKIICVATSALRDAPNRNIFLQQARKIGLNVKVINGEKEAYFGAI AALNLLPYKEGITIDIGGGSTECALIQNHKIIDKISLNLGTIRLKELFFDKGDYKGARNF VLESLKSIPDHFKNARIFGIGGTARALSKAIQKQINYPLDTLHGFEYHFKDYHHFFKTIY TSPQEDLLHLNIKEDRLDSIQGGALIFHLALELFEAKTIVTSGVGVREGVFLSDLLRHHN QHFPNNFNPSVRNLKDRFIKNHQQSNITKKLALKLFRAQESLKLLNPNLKNHLSVAAELC NIGIALNFYEKNHHSNYILLNALNYALSHEDRLIIATLVRFNNKKIPEDLAYKNLLPPLD VLRILSFFVGLSEILSYNQQPELFTFIFLENENNILQIIHPNISYLIREKLKKLTPPKTI QIELC >gi|197325098|gb|DS990368.1| GENE 493 498883 - 499134 428 83 aa, chain - ## HITS:1 COG:HP0277 KEGG:ns NR:ns ## COG: HP0277 COG1145 # Protein_GI_number: 15644905 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Helicobacter pylori 26695 # 1 83 1 84 84 94 67.0 4e-20 MSLMINEECIACDACREECPNEAIDEGDPYYIIDPELCTECYGFYDEPACLSVCPVDAIV SDPDNIESLEELKFKYSQIHKEN >gi|197325098|gb|DS990368.1| GENE 494 499393 - 501435 2219 680 aa, chain - ## HITS:1 COG:Cj1234 KEGG:ns NR:ns ## COG: Cj1234 COG0751 # Protein_GI_number: 15792558 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Campylobacter jejuni # 3 680 2 664 664 581 48.0 1e-165 MTTTFLLEIGTQELPAIPLLTELPNIKPKFAKILEKYRLLCDFDFFYTPRRLVLIAKQFP ITQKSQTLEFFGPPLNIAYKDNEPTQAALGFFKKCGITQQEVTTLIKDDKEILYFKKESP QTPAQDLLQIITQEFLESLNFGKSMRWGNHKESFIRPISWILCLLNDTLIPLHLYGINSK SQTFVHRNISFDAKEVTSLDNYFQVLQGGKIILKQDQRREKILQEIQAIQTQKGIKVEID EELLEEIVSITEYPTALFGEFSEHFLELPPPCIITSMKINQRYFATYKNEKLHNGFVMVS NSLSEKNQIIIEGNVKVLKARLEDALFFYHNDLKNGLNPEKLKEVTFVEGLGTMWDKTQR ERQIIKILAPLYQKYFNSQDFGLTLEILDQASNLSKADLMSEMVYEFTDLQGIMGYYYAN ALGYESNVALAIKEQYLPNSEESPLPSNLISAFVALAYKLDNLFGLFSVKKIPSGSRDPF ALRRAAIGMIKIILHFDLPFDLKKIFSLIAPLYRPFDLQQLENFILERLDSMLSFNASLL RAVLATGERDLLQIYQKLSVLDSILKNQDKALLTQTFKRVANITKEINLNSDLPIKADKL LASEEIELYKAFCAYEEKSLTLNYQEQLENLLALNPLLSRFFDKVLVNAPDEDFKNNRKN LIARIYKAFLKIADIKEISF >gi|197325098|gb|DS990368.1| GENE 495 501573 - 502886 795 437 aa, chain + ## HITS:1 COG:Cj1492c_2 KEGG:ns NR:ns ## COG: Cj1492c_2 COG0642 # Protein_GI_number: 15792807 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Campylobacter jejuni # 204 436 4 223 226 90 33.0 4e-18 MLEWNENYSIGILIFGILVAIIWLLLFLFFNYRKMLLDKIKLETNLREKQEKIQVLSEEL AKQLEYEVARRIHSDHLSEYLFENSLNPIVIVEYSKEEKFKILKYNQSALEILNIKIMKE CFLELFVGLESQKYALMKINEALENKKKQNFKSIIKSKNENLPMIVSVHTFIYEGKLALY FAFVDISEIVKLEQKLHNKQAMLIQKSKMEEMGKMLGNIAHQWKQPLNSLFLLCQNLKEM KQFGELDEERFEKYIKIMSEQIQFMSKTIDEFREFFKPSKEIERFGVYEAIKNILELFYK LIDKRIVIQLDIEEKVNIFSSKNEFQQIIIVLLDNAIDAIKARFLKNEINEGQIIISCNK VDKEDQFCLLKIRDNGGGINKEIGEKIFESYFTTKENGNGIGLAMVFMILEKMGGSIAYS NCNDGVEFQIKIPLAKD >gi|197325098|gb|DS990368.1| GENE 496 503002 - 504621 1945 539 aa, chain + ## HITS:1 COG:jhp0095 KEGG:ns NR:ns ## COG: jhp0095 COG0840 # Protein_GI_number: 15611165 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Helicobacter pylori J99 # 186 538 210 563 564 151 31.0 3e-36 MGNLGLEEMKIFKTIRSKIIALIVVFLVVLLGLVYFNLNKGLNNIVENSFRSELNKLNAM LFEGLKVAMNTGDPIIIGGFIEGSREVPGIVNMEVFPSKNVIELMGLDKEYTNKQEILEV FANKKEVLQPYEINKDKGYVMAKPIIAEETCLMCHATSQIGEVLGVAEMQISSKELVENS NAIKLKIVFYIVFVGVILLLLLLFLINRWVFHPISNLSNMAYDLSQGDGDLTKRLPAKNG NEISKANSYINDFIQKIGNMVLNAKELSRQNIAQANRLFVASKEINERIGKSVEVVQNST KLGKNIENMLNDSMKLVQKNTHNIQETTKQLLQTKEMLIQVANDVQENVNVEHSIADRLA MSAQETDKIKGVLIIISEIADQTSLLALNANIEAARAGEAGRGFAVVADEVRKLAERTQK SLSEINAVVNTIIQSISDSNSAMSDNVQKISKVSDSSMESTRILESNVKALEGSVQASLE TMQKMQDLFSHVSEILKQVGKVEGLTQENTQSVDLINEITQEISQKANKLNNQLNSFKC >gi|197325098|gb|DS990368.1| GENE 497 504618 - 505571 408 317 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 9 311 37 345 353 161 34 5e-38 MKEPIIKPNTLMLAPLAGYSDLPFREVVKKFGADITVSEMISVHALAFQNKKTIKMIEKS PLENPFALQIAGNDFEIIQRAVEFLNQFRDSIQILDLNCGCPAPKVSSHGSGSSLLKDLN KLVKILNLLRKISLFPYLSVKVRLGFDKKIPLEIAKALSDSPIDYVVVHGRTKSDGYKKD KIDYDSIKIIKENIPHPLIANGEINSPETAKKVQEFTGADGIMIGRSAIEKPWIFTQIKN NLEESVELRKQVALEHFDRTIEFRGDYGAIMFRKNLHAYSKGLKGASEFRSKVNAITNPT AMREEILNFFSHSDFEN >gi|197325098|gb|DS990368.1| GENE 498 505736 - 506071 544 111 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418137|ref|ZP_03656143.1| ## NR: gi|224418137|ref|ZP_03656143.1| hypothetical protein HcanM9_02558 [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 111 1 111 111 222 100.0 7e-57 MKVKKIITGFLMAGLLSIPALADFDINGQITQINDAKKTITIAGPSGNVEIQVFPYTELK GDDCGMFGAWDTYEKFTALKVGMFVSVDAIPQAQGMLGAKEIEWQCGRRAY >gi|197325098|gb|DS990368.1| GENE 499 506073 - 506399 327 108 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418138|ref|ZP_03656144.1| ## NR: gi|224418138|ref|ZP_03656144.1| hypothetical protein HcanM9_02563 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0816 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0816 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 108 1 108 108 204 100.0 2e-51 MQNYKIFGESCSPHFIPKELLTPFSVIGNQNHWQEAIDYTFATLREHQRIQSLLLIFFSH LDSLLIPNQQKLTEILKNGCKIYFFVSKDSFSFEECNYLSQFGLVIAF >gi|197325098|gb|DS990368.1| GENE 500 506386 - 508053 2019 555 aa, chain - ## HITS:1 COG:Cj1005c KEGG:ns NR:ns ## COG: Cj1005c COG0465 # Protein_GI_number: 15792332 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent Zn proteases # Organism: Campylobacter jejuni # 9 552 11 537 538 434 47.0 1e-121 MQKFKTLYFGIFTLILAIIIFIAFALKDNALLISATHLDKILQNSLPTHAKIKGDYLYFD LDDKSYKIAKDTIDLKNFGQTIPLEITQENSILENVFLFFLIFVLVLVILLFLSKSKKNP QNISQKDSSYQQQARAIANEAFLLHNIKPITSHLGFEDVAGITEAKEELKEIVDYLKSPK KYQDFGVKLPKGVLLVGPPGVGKTLIAKALAGEAKVPFYYQSGASFVQIYVGMGAKRVHD LFTKAKLNAPAIIFIDEIDAVGKARGGMRNEERETTLNQLLTEMDGFEDSNGIIVIGATN NIESMDEALLRSGRFDRRIFIELPNLQERIKILKVHTRDKNCDFNYEEVAKLCVGFSGAA LASLVNEAALCAIKRNSNTIQKEDILNVRDKVIVGIRKKLSYDEKEKEILAYYQAAKAFS AYWFEIPFEKIALMSNTLKYLDKELLSKNELENQIKIHLSGIAALELLYNESYSYAKDDL NEAKKLTHKMVESYGMGEFLLGSEKDIVKILEDCKNDRLSFFKNYKYLLEKIQKELLTKE KLEYHEIRDLIHAEL >gi|197325098|gb|DS990368.1| GENE 501 508040 - 509311 261 423 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229216491|ref|ZP_04342811.1| SSU ribosomal protein S12P methylthiotransferase [Desulfomicrobium baculatum DSM 4028] # 1 345 1 362 441 105 27 6e-21 MQKPKVFFKTFGCRTNLFDTQVMIHSLKDFSQTPYEEDSDIIVVNSCTVTNGADSGVRSY INRLQNEGKKIFFTGCGVKTQGQDLLQKGLIVGAFGHSYKESINEILKRTQNFYLEGDLE SLDRNIISDFIGKSRAFIKIQEGCDFACSYCIIPSVRGKARSFEKNKIINQITKLTQNGF SEFILTGTNMGSWGKDSNENLTSLLESICAIPEVKRLRLGSLEPSQITQDFLDFLDHPKI ERHLHIALQHTSPFMLKLMNRQNTFEKDLELFNTLAKKGFALGSDFIVGHPQESQEVWEE AFSNFALFPLTHLHSFIYSPRSGTFSASLKERVSGDISKIRKKQIEAKVTENNFAFRQKL SKANKPISVLIEEVKSNENSYLASGFDEYYNKIQITSKTPLTKDSWITFQRFMPQMDKNY AEI >gi|197325098|gb|DS990368.1| GENE 502 509321 - 510982 1555 553 aa, chain - ## HITS:1 COG:HP0284_2 KEGG:ns NR:ns ## COG: HP0284_2 COG0668 # Protein_GI_number: 15644912 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Helicobacter pylori 26695 # 227 533 1 307 326 356 57.0 8e-98 MKKLLHLISLLFLSLTPLFAELKDDIQQIKQIDSQITKINNFLNHQNNIWMKKYSNYQAY QQVSFNLNQTQKEIQTLQESPNTLENQTQLNNLKRNLIALQNQKDLLGNYKDAPFKELIE PNKLEKTPNVTNPLLIINALSHIKKNNEELGNLQKNYKTLEENISQLQQKEQLLKNLLLL YESSSNETKIQQICAADYCLFNNTNQIYEEIKNATNALRILENTKNIFATTLQIFSKEIE EINNNLTAQIKSQIIKGITIGVTILFLLGVAFSIKLGVRKYIHDNERIYTTNKIINFLNI TLIILILLFAYLDNVGYLVTVLGFASAGLAIAMKDLFMSVLGWIVIVVGGSVHAGDRIKV IKEGAVYVGDVLDISILRITLYEDITLTTYTENRRAGRVIFIPNNFVFTTMFSNYTHGGI KTVWDGIDFTITFDSDHAKACHIARECAKKYAKGYTESTRKQFNKLRDRYTLKNTNVEPR VFSLLEQNGIRISVWYLTNAYATLALRSAISAEIIDLILKEDNIKIAYPSTTVYEGNKLS NTLPKTDGSIPLT >gi|197325098|gb|DS990368.1| GENE 503 510979 - 512001 799 340 aa, chain - ## HITS:1 COG:HP0283 KEGG:ns NR:ns ## COG: HP0283 COG0337 # Protein_GI_number: 15644911 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Helicobacter pylori 26695 # 2 339 3 342 343 373 56.0 1e-103 MEITLPSYTISFGTLPKIKHKGKVLVVTNPKIAGLHLQKLLANLEATEVYCICLQDGESY KNFQSIEIILEAAFNHHLDRNSLIIAFGGGVIGDMVGFAAGIFMRGIHFIQIPTTLLSQV DSSVGGKTGINNHFGKNLIGLFHQPKAVYIDTGFLQTLPPREFSAGVAEIIKMAICFDKD FFNLLCTSNLDDSNILLQVIHKAVSIKAKVVTEDEKEKGIRAALNYGHTFGHIIELQSGY GTYLHGEAVSLGMIMANTLALKLNLITQEESNAITKTLQRFHLPTNYKIKNIESFYQAFF LDKKSQNNQITFILPNGIGNFSFQSNIPKSTIIEVLEEFV >gi|197325098|gb|DS990368.1| GENE 504 512197 - 512550 428 117 aa, chain + ## HITS:1 COG:SMc01179 KEGG:ns NR:ns ## COG: SMc01179 COG2076 # Protein_GI_number: 15965367 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Sinorhizobium meliloti # 1 111 1 111 114 81 37.0 3e-16 MFRAWLFLIIAIFCEVFGVSVMNYSGQVNKFLAYGCMFFMLGISYYFMSLAIQRINIGTA YAIWEIVGLSLITIISVLIFGNHLNTQEYIGLTLALIGIILVNLGEKHSSQDELGGK >gi|197325098|gb|DS990368.1| GENE 505 512550 - 512873 313 107 aa, chain + ## HITS:1 COG:SMc01178 KEGG:ns NR:ns ## COG: SMc01178 COG2076 # Protein_GI_number: 15965368 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Sinorhizobium meliloti # 6 107 8 108 108 72 51.0 1e-13 MFSVYFVYVILAAILDIVANLALNKSEGFRKLRWGLFSIGLVWLAFYLLALSVEGGMSLV VAYTLWGCIGIFGTTLGGWYFFNQRLKPIGWIGIFIIILAVVVLKSA >gi|197325098|gb|DS990368.1| GENE 506 513002 - 514168 1554 388 aa, chain - ## HITS:1 COG:jhp0615 KEGG:ns NR:ns ## COG: jhp0615 COG0436 # Protein_GI_number: 15611682 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Helicobacter pylori J99 # 2 386 3 388 390 497 65.0 1e-140 MYSSKVTNLSESITIAISSLARELKAQGRDILSFSAGEPDFDTPQVIKDEAIKAIQNGFT KYTAVAGIPELLQTISHKLLKENHLNYTPEEIVVNSGAKHSLFNVFQTLIEKDDEVIIPS PYWVTYPELVTYSGGKNVFIQTTQENRFKITPEQLKSAITPKTKILVLTTPSNPTGMVYS KSELESIAEVLKGTNIWVISDEIYEKLVYDNAFTSCGSISQDMLERTITINGLSKAVAMT GWRMGYLATKDRKLRQLIVGLQSQSISNINSITQKASIPALDGRADQDIQRMCQAFKERR DVACKLFNEIQNLSVDLPDGAFYLFVNCKNVNPDSMEFSKALLEKEGVAVVPGIGFGAEG YFRFSFATDLDSIKKGIARIANFCQSYK >gi|197325098|gb|DS990368.1| GENE 507 514456 - 514716 458 86 aa, chain + ## HITS:1 COG:HP0011 KEGG:ns NR:ns ## COG: HP0011 COG0234 # Protein_GI_number: 15644644 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Helicobacter pylori 26695 # 1 86 1 90 118 119 65.0 9e-28 MNFKPLGERVLVERLEEDTKTASGIIIPDNAKEKPLMGVVKAIGSEVKEVKVNDKVVFGK YSGTEVKLDGTEYLILKLEDVLGVIA >gi|197325098|gb|DS990368.1| GENE 508 514746 - 516386 1771 546 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 1 546 1 547 547 686 64 0.0 MASKEINFSDNARNRLFEGVKQLSDAVKVTMGPRGRNVLIQKSFGAPSITKDGVSVAKEI ELADPIANMGAQLVKEVASKTADAAGDGTTTATVLAYSIFKEGLRNITAGANPIEVKRGM DKAAEAITEELKKISKPVSGKKEIAQVATISANSDAKVGELIAEAMEKVGKDGVITVEEA KGINDELSVVEGMQFDRGYLSPYFVTNSDKMEAELEHPYILLTDKKITSMKDILPLLEST MKSGKPLLIIAEDIEGEALTTLVVNKLRGVLNVAAVKAPGFGDRRKEMLKDIATLTGGEV ISEELGKTLENATIADLGQASRIVIDKDNTTIVDGVGSKDAVNARIAQIKTQIESTTSDY DREKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIIIGGGAALI RAAAKVSLSLEGDEKIGYEIIKRAISAPIKQIATNAGFDDGVVVNNVEKDSNANNGFDAS SGKYVDMFEAGIIDPLKVARIALQNAVSVSSLLLTTEATVHEIKEDKPAMSDMSGMGGMG GMGGMM >gi|197325098|gb|DS990368.1| GENE 509 516585 - 517700 1384 371 aa, chain - ## HITS:1 COG:jhp0835 KEGG:ns NR:ns ## COG: jhp0835 COG0409 # Protein_GI_number: 15611902 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Helicobacter pylori J99 # 5 368 7 370 370 447 57.0 1e-125 MNPYIDTYRNPLKIKETFNAIRTLSKNLTNPIKIMEVCGGHTHTIMKYALPQLLPENIEF VHGPGCPVCVMSKGRIDCAYQIASQKDVILVTLGDMIKVPGSYGSLQQARAKGLNIVFVY SPLEILKIAQNNPNKKVVYFAIGFETTTPMTAALLQKVIALNLKNVFFHINHVLVPPPLD IILGDENCQINALLAPSHVSVITGSKIYEPLVKKYHIPIVVCGFEPVDIGESLLSILNQI LTNSPKVETQYARSVTYEGNLKAQSLVEQYFTLEKSFYWRGLGEIPHSSLKLKEEFSEFD AAVIFKDCLGGIPKEEHKNCLCGEILKGNKKPYDCKLFGKACNPQNPLGSCMVSSEGACA AYFKYQGIQPV >gi|197325098|gb|DS990368.1| GENE 510 517763 - 518215 320 150 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418149|ref|ZP_03656155.1| ## NR: gi|224418149|ref|ZP_03656155.1| hypothetical protein HcanM9_02618 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0827 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0827 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 150 1 150 150 260 100.0 2e-68 MKNKILTFFILSFAVLFFANCNQTTLAPNNPTLPYPKIIYDKALDTSIIPTDFPKTFENR FKILFNQNPNPKIQAIHYYFTHFYNEGQGDRSPNASFSVLPRYLIQLNLKVITQDTTSFY KQSYEIPIALFNPIYDQHFDSLISKALKTQ >gi|197325098|gb|DS990368.1| GENE 511 518284 - 519120 671 278 aa, chain + ## HITS:1 COG:Cj1102 KEGG:ns NR:ns ## COG: Cj1102 COG0130 # Protein_GI_number: 15792427 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Campylobacter jejuni # 3 278 1 272 272 239 48.0 3e-63 MILDGIFVAKKPLFVSSNGYLGFLKRRDGAKKAGFSGILDPFACGVLVVAYGQYTRLFPF LKKTPKVYQATLWLGLESDSLDIENIQRIHQVKIFSKEYLKEVLQKFCGKIGFIPPKYSA KKINGKKAYELARAGKEVVLKEQTMEIFKIEFLNYSHPFLSFKVWVSEGSYIRSLGEMIA RELGCLGGLSYLERLSEGGLHYEDEKLLNPLEILDLPKVLAINNGVLKEKVQNGKQITQD ELQITKDGKYIVQFEDFFSIISNQENKIQYLANRIPLC >gi|197325098|gb|DS990368.1| GENE 512 519114 - 519344 306 76 aa, chain + ## HITS:1 COG:HP1442 KEGG:ns NR:ns ## COG: HP1442 COG1551 # Protein_GI_number: 15646051 # Func_class: T Signal transduction mechanisms # Function: Carbon storage regulator (could also regulate swarming and quorum sensing) # Organism: Helicobacter pylori 26695 # 1 58 1 58 76 59 58.0 1e-09 MLILSRKENESVSIGEDITIKIIGIDKGSVKIGFEAPPHLTILREELKQAILETNKKSLS HKEDKIDWLVNAKKKK >gi|197325098|gb|DS990368.1| GENE 513 519345 - 520100 752 251 aa, chain + ## HITS:1 COG:Cj1104 KEGG:ns NR:ns ## COG: Cj1104 COG1947 # Protein_GI_number: 15792429 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Campylobacter jejuni # 2 249 1 253 255 166 40.0 4e-41 MIKSYAKINIFLKITGRVIIESIRYHTLYSRFMLVKNLFDCLEIQESKVGFEILGDFDCP MEKNTIYKAYEAVLPFLNQEKQEFLSHQKVEVEKKIPSGAGLGGGSSNAAAFLLWANEAL ELQWSFEKLNKIAQKVGSDVPFFLSQYEVADVSGRGEKISKSKEKALEVEIVTPKIHCDT TKVYQTYAKEFYTPTQENWLEFGNAKILQQSPYENNDLLNPAIKLYPSLKEYAQQGYFLS GSGSSFWKVKE >gi|197325098|gb|DS990368.1| GENE 514 520103 - 520561 363 152 aa, chain + ## HITS:1 COG:Cj1105 KEGG:ns NR:ns ## COG: Cj1105 COG0691 # Protein_GI_number: 15792430 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Campylobacter jejuni # 1 150 1 150 150 153 58.0 1e-37 MKVVATNKKALYDFFILEKYEAGIALEGSEVKSIRAGRVNLKDSFVKIVKGEAFLFQAHI SALETTNRHYKPDEKRPRKLLLHKKEIDKLFGKSQVGGMSIVALKLYFNKRNKAKLEIAL AKGKNLHDKRETLKEKIQNREIAQTLKEFQRR >gi|197325098|gb|DS990368.1| GENE 515 520572 - 521045 427 157 aa, chain + ## HITS:1 COG:jhp1338 KEGG:ns NR:ns ## COG: jhp1338 COG0811 # Protein_GI_number: 15612403 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Helicobacter pylori J99 # 6 152 1 149 150 143 51.0 1e-34 MFGLNLKEMVEYGVMGILLLMSIIALWAVFERFLFYRYIKLVLYENKTELEIDLSKNLTL IATIGSNAPYVGLLGTVFGIIMTFVQIGQLGMVDTANIMTGLALALQATAGGLLVAIPSI IFYNLLMRKSEVLVAQWEILQEKKQRNQHYSKEVESF >gi|197325098|gb|DS990368.1| GENE 516 521055 - 521444 511 129 aa, chain + ## HITS:1 COG:jhp1259 KEGG:ns NR:ns ## COG: jhp1259 COG0848 # Protein_GI_number: 15612324 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport protein # Organism: Helicobacter pylori J99 # 1 126 1 127 129 87 40.0 5e-18 MRYSKRMDNINIVPFIDIMLVLLVIVLTSATFIAQGKIPIAIPKAQGSEAVKEELKSVEI TINAQGEYFLDKNQTNLEAIKEALLKMPKDTPILLRGDQKSYFEKFIALVGVLNEIERVN VDIQVEQIQ >gi|197325098|gb|DS990368.1| GENE 517 521444 - 521626 228 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418156|ref|ZP_03656162.1| ## NR: gi|224418156|ref|ZP_03656162.1| hypothetical protein HcanM9_02653 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0834 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0834 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 60 1 60 60 104 100.0 2e-21 MLKESYDLTTIISAVVTFLIILLAIRFILFMVNRKGSQIQKPDWLEGDERFEVKKRKKGR >gi|197325098|gb|DS990368.1| GENE 518 521627 - 524248 2840 873 aa, chain + ## HITS:1 COG:no KEGG:WS0888 NR:ns ## KEGG: WS0888 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 6 572 9 540 693 221 32.0 2e-55 MENILVNIIFTIIMLGLALWDFLSYGKQKHRDFKSIIMSAGVLGTFVGIFIGLQDFNVNE IEKSVPFLLEGLKTAFYTSILGMSLAILLAIIQKGKAVKSDFENMMDYFSLQASKLDELK YLKTIVDQSLKSQDFQEKYRLAQEENFLKISKHFDATNHTLKEAMQYLVQGASKELISAL ESVIRDFNQKITDQFGDNFKELNAAVSQMISWQENYKNTLEGLDENLKNTLKVFKNSQEV LEMVAERNSEVLEVYNALAHSIEASRIENQKLSQMLLGFEDMHKNAQSALESVQSLTHIM QESHQQAMDLTKQNLQEVRGYLQTSMQEHKNVTQEMLTDNLQVLQKDYLELSGNLNNLQK DLGEFTQSYLVQNKENMDQFLTQVQEESEKCLNHIQKSNVELNNQNLEMLKSAKENITEY LQKVNGSFEETLGELDKTQKESLLLLEGQTQKSDAILEQHRQDLEIILKNTSGTLEQMGN EAKESMLKNTNALEEHIANAVLSFDSLLGNTTKTLQENFQESKETLKEISKDIEDSMLVV TKSLDTMLNETANSLSKSAQNIEESLVDTTQNLKDNFSKTTQDISQSVDRLLVYNQSKSE DIHKLMEQNLEDLSANLQAMSQNTQEHYEELQNQMRSSFGESYKNAIETLGAYLKNSSNL YQNQLSKLSQNSLETLQKHHLESLQSHQGMQQELQKSLSEIVQKFGLGSKQILGTIEGLS KELLQFSSQHLDSHSKKVIAQYSALEEKVKNILQEMAKRYLEMLSTLTQQSLEIPKNVST ELLNEFNQLQKNLGESLEGAYTALENNRKEIEGILKIIQTNVDSSLSKTTSLNENLCRSL GDLDGALSNITLGFRQDYEWFLRRIRELMGARN >gi|197325098|gb|DS990368.1| GENE 519 524248 - 525039 855 263 aa, chain + ## HITS:1 COG:ECs5257 KEGG:ns NR:ns ## COG: ECs5257 COG2885 # Protein_GI_number: 15834511 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Escherichia coli O157:H7 # 11 234 19 233 235 166 41.0 3e-41 MANDFNKGNEWISISDMMAGVMMIFLLVAVGYMVVISKTQKELALQNAELLALNKQMSDV AKTHQNLQTELYKDLVAEFSKDLGKWNAEIDEDNTVRFREPDILFDQGEKEVKSRFKEIL DDFFPRYIKILSRPQYKEDIEEIRIEGHTSKEWKNAKSLEDRYLGNAELSQARALEVLKY CFNNQQIAKQKEWLVSVLRANGLSFAKPLESAELSRRVEFKVLTKSNQKILKILNINKES QEAKVESIQKEELETIKTKENEK >gi|197325098|gb|DS990368.1| GENE 520 525046 - 525738 593 230 aa, chain - ## HITS:1 COG:Cj0086c KEGG:ns NR:ns ## COG: Cj0086c COG0692 # Protein_GI_number: 15791474 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Campylobacter jejuni # 1 230 1 230 231 296 61.0 2e-80 MQDLNISLENIKIEESWKLALKDEFLKPYFLEIKCHYLNAKNAGKILYPPAKLIFNAFNL TPFTSLKVVLLGQDPYHNPNQAMGLSFSVPKGIPLPPSLKNIYQELYEDLGIPPSHNGDL TKWAKQGVLLLNSVLSVEQNKPASHQNFGWQTFTDNVISTISLQKEGIIFLLWGNYARAK KNLIDSKKHFILEAAHPSPLARGAFFGCRHFSKTNQILESLHKTPIDWQI >gi|197325098|gb|DS990368.1| GENE 521 525738 - 526031 399 97 aa, chain - ## HITS:1 COG:jhp0909 KEGG:ns NR:ns ## COG: jhp0909 COG0721 # Protein_GI_number: 15611976 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Helicobacter pylori J99 # 4 97 3 93 93 64 43.0 4e-11 MNNIDNQLLARLQNLASLEISPEKLESTKENLNEIVHFVENINALDLSEIPASFNAIHST LPMREDKVENKPEIASNILKNAPKSEENFFIVPKIIE >gi|197325098|gb|DS990368.1| GENE 522 526028 - 526675 686 215 aa, chain - ## HITS:1 COG:RSp0815 KEGG:ns NR:ns ## COG: RSp0815 COG1309 # Protein_GI_number: 17549036 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Ralstonia solanacearum # 6 120 1 111 207 66 30.0 3e-11 MEAQKLARGTQEKYQKTLNIAYQLFLKYGYEKTSLQMIVKETGDSLATIYKLFGNKRKLF QKVIEQENGDFFQSLAEHFMQVQQSELCLQDFLISIGKKLLNEIFTPETIALNRLIFIEG YNDSELLQTFQISCVDKILFYFSKCLETYAKREKIHIQNLQEDAKFCLDLIVSPYLLHSL LDSNYIPPNNEETERIARKSAHIFLLYLQHNKETL >gi|197325098|gb|DS990368.1| GENE 523 526840 - 527313 541 157 aa, chain + ## HITS:1 COG:Cj0581 KEGG:ns NR:ns ## COG: Cj0581 COG0494 # Protein_GI_number: 15791941 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Campylobacter jejuni # 6 157 5 156 156 206 64.0 1e-53 MRKETKTYRPNVAAIILSPKYPLTCELFIASRTDIKNAWQFPQGGIDKSETPKEALFREL KEEIGTDKVDIVAEYPEWISYDFPPSVVKRMYPYDGQIQKYFLVRLQENGIIDINTEEPE FDEYKFVTFEDLFNHITYFKRPVYRQVLEYFKRKGYL >gi|197325098|gb|DS990368.1| GENE 524 527313 - 528518 1725 401 aa, chain + ## HITS:1 COG:jhp1150 KEGG:ns NR:ns ## COG: jhp1150 COG0527 # Protein_GI_number: 15612215 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Helicobacter pylori J99 # 1 401 1 405 405 520 71.0 1e-147 MLIVQKYGGTSVGDCERIQNVAKRVVESKEKGNSLVVVVSAMSGETDKLLGYTKFFSRLP KEREVDMVLSAGERVTSALLAIALEEMGYKAISLSGRAAGIVTDTSHTKARIEEIDTTYL NELLAKDYIVVVAGFQGVTEKGEVTTLGRGGSDLSAVALAGALQADLCEIYTDVDGVYTT DPRIEPKAKKIDKISYDEMLELASMGAKVLLNRSVEMAKKLNVNLVTRSSFNYNEGTLIT KEEEIMEHPIVSGIALDKNQARVSICNVEDRPGIAAEIFGALSEANINVDMIVQTIGRDG KTDLDFTIPEVELENTKRVLKAFEGSVESIDYDSDIAKVSIVGVGMKSHSGVAARAFQAL AEDNINIMMISTSEIKISMVIRLKYAELAIRTLHSVYQLEK >gi|197325098|gb|DS990368.1| GENE 525 528518 - 529063 708 181 aa, chain + ## HITS:1 COG:no KEGG:WS1730 NR:ns ## KEGG: WS1730 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 181 2 182 183 173 47.0 3e-42 MQDIVSWTTQILRHDASRPTWLEERKFEWIPLIKRALQRIFNGESMILVTDRDREWFAHY VIFSINKTNNRPYVPIMSINALFPQIDKNQQDDSEVLLISDYLNNIFSQGYFFWYIGKND ALRAKLALSYEDCFLWIFDTELQNSFTLQSTDPLVDIKLMQMYRIFNLTIEAALFGQITL E >gi|197325098|gb|DS990368.1| GENE 526 529065 - 529700 647 211 aa, chain + ## HITS:1 COG:HP1231 KEGG:ns NR:ns ## COG: HP1231 COG0470 # Protein_GI_number: 15645845 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Helicobacter pylori 26695 # 33 185 47 199 218 83 38.0 2e-16 MQSHILLVNDPIAVANQHYESENPQNCRLFCAEELSIELAREIIDESYIASTGYKFVLIA ANSFNVYAQNALLKILEEPPSQVCFILFARMKSQLLPTIRSRMPIINQLKKEKLSPFSLS IRTLALKDIYPFLKEKSKEFGTNPTQLKIEIQSLYLDCIKEGLSFNLKEMQLFEEALFWA GHYEKIQHIFLVLLLMILNKKKEKMHQDIKM >gi|197325098|gb|DS990368.1| GENE 527 529725 - 530855 996 376 aa, chain + ## HITS:1 COG:jhp1153 KEGG:ns NR:ns ## COG: jhp1153 COG0294 # Protein_GI_number: 15612218 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Helicobacter pylori J99 # 15 376 15 377 380 323 45.0 3e-88 MEIFIKALNNPLQELKELGCEEMGFGIMKNKMQTNCFYIYGLKTPAAQILKQEALACGGD FALPRDAILYQQDTYNGILMLNKAQGKALLKKLKIQPFGLKKVAESLEKHWQRKNFKPRI MGIINATPDSFYKDSQKNTQEAYKRIFEMIEEGVDIIDIGGASTRPGSEWVSKEEEMERI KPIVDFIACEKINQRVAFSIDTYTPEVADYCLKNGFAMVNDITGFQNIKMLEVVEHYDCE CVVMHMQGNPKEMQKNPYYENLFFEIDDFFKRQIEALLNHNIKKIILDVGIGFGKSLQHN CELIRNLKHFLHFGYPLLVGASRKSMIDKIIPCDVSERLAGSLAIHLESLKNGASIIRCH DTKEHIQALKVWEALQ >gi|197325098|gb|DS990368.1| GENE 528 530855 - 531835 1007 326 aa, chain + ## HITS:1 COG:no KEGG:HH0622 NR:ns ## KEGG: HH0622 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 10 326 14 325 328 122 27.0 3e-26 MERKELIWQLGKHGHSKDSLEVMPLNDLIKLFKKESKQTILDYMQLMKEDKQTENVIEDN EALIEEQLAEIRLAINGEMIDFKTLYESIEKIFAQYGLHETIELVLTQIRDGRYKQVTRI VELAYRAYQEKLLDKLEKLFEDYPRQERMEQMKFYGSKREDIQFLQETIQILENKKEKEN LSRIAQLKYGIIRDYFPDSLYENYEEYYEDEEEKNKIIERIMKLTNAYKRPVLKKKRRQI LQHIERVLLEDKEREKEEKNLIKKFTKQIGEAVSSEDEYEFSSVVKEALDKLDERDVRRI VFSFDISSNPILVQQFNILTREFRHS >gi|197325098|gb|DS990368.1| GENE 529 532014 - 532955 816 313 aa, chain + ## HITS:1 COG:HP1044 KEGG:ns NR:ns ## COG: HP1044 COG1408 # Protein_GI_number: 15645658 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Helicobacter pylori 26695 # 1 311 57 365 370 221 38.0 1e-57 MSQSLYFLVSLSIGVGFILFVTALLYQPLSLIPYFSKKRRTFLRNGINLFSGIFAGGYLG FGLIEGKMQPKVERIRLPLEGLKIPFNAVQVSDLHIGGLIEENVVKRIVNQVNSLGADVI FLTGDIIDTEVSNISQAMEELSKLKAPLGVFFVTGNHEFFHNVGKLLTTLKSYGIRVLEN ENIILAKNGKNLVNLAGVYDLFGRKVGVLEPNLTKALENREDSLPTILLAHQPKFALEVD DSKRVDLILSGHTHGGQIFPFRFLVMIDQPYLAGLYQHTPKTKIYVNRGTGFWGPPMRIL SRAEITYFEFVAG >gi|197325098|gb|DS990368.1| GENE 530 533020 - 535413 2271 797 aa, chain + ## HITS:1 COG:no KEGG:WS0490 NR:ns ## KEGG: WS0490 # Name: pflA # Def: flagellar functional protein # Organism: W.succinogenes # Pathway: not_defined # 20 785 13 777 778 541 40.0 1e-152 MRMIRKITFLLLMGVEFASSLEFYINSGREDSKDFAVLNIVDSTPFSCQEKYNRESEVQE IVCEFESNLISHFSKTNTLFFSITPEITEERFYLKITPKHKMKLFNVGQDLLASNPIFEE KTQKSNKWQIVGYEDEIPFLGEEESEGLNFPISFNESLQYPRIGVLDFGMRPMNNEVGQD KDYFLTIQNLLKRGSYQEALDSINEMLQIYPETIFKRDVLFMKLQALDEIGGEENYEEII SLGKAWLSAYPADIHIPEVLLLLAENYVKMNFFEEASYYYDRIFKEYKNDKSELLARLSY GQKIFERGDKKMPLELYQSVLNQTQDLEIASLAALLLGEYYREAGDKQRAQEYLKNVFDA NPNYFLKEIPKHYATLQKWADLGIYETPAQVAEVMFLSLSDDSLPYYRPLLRDMAEWYDK AGNIPKAHKYYQLLLQKPQDIQEEREIQALDDLLLLNDKESNATKRLEHYDYVIQTYKGK EEEKEALLKKAQTLYEMGNYQAVFAMRDSLAKDDSVLLGSVGALTQESITKKDCKAAAYY GNLYAEKIPLDSEGKMDLFDCLYENQQFEPALKIAQDELSKVKTPEMKEDWLYRLGWVEY NMQNYPKAILASRDVVKISKNPNYKDSLWVLFMALEKEGRKEEAFELLPQMEESLGTDSR MIEIYRIMLLDALGKKDDTAIRIYANKLLGLQEQYKKYEYSPWAELSLVEALNREGKFQE SLEILQKSQAYVTAPTDQIRILYLQGYLSDKLNQKEKAISFYGQCEAIEAQSTWKNLCIE AKKLLEAENATKENNGQ >gi|197325098|gb|DS990368.1| GENE 531 535403 - 535627 355 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418170|ref|ZP_03656176.1| ## NR: gi|224418170|ref|ZP_03656176.1| hypothetical protein HcanM9_02723 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0848 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0848 [Helicobacter canadensis MIT 98-5491] # 1 74 1 74 74 82 100.0 1e-14 MDNKAAKENKDFEMSLKEIEECLEKLNDDNIGLHESMEIYKKGMKSLKEAQKMLENAQMQ CNEIKMQFETKEEE >gi|197325098|gb|DS990368.1| GENE 532 535624 - 536400 718 258 aa, chain + ## HITS:1 COG:Cj1056c KEGG:ns NR:ns ## COG: Cj1056c COG0388 # Protein_GI_number: 15792383 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Campylobacter jejuni # 2 257 3 251 258 170 39.0 2e-42 MKIAALQLSLEKSQKEIKNYLEIAHSQKVKLILFGEYFFGSFFKTLEQTKKSQLVSKIET QNKNLIALSNEYPMIFVSPILEIVGTKIYKSIAIINKGKALKYRAQRLMPYEHWNEARFF ANTLPKLIKTPPIFNAGGFKFSVLFGYELHFDEFWLKFKQNNVDCVLLASASTFDSSLRW RNIIKMRAFLNSSYILRANRIGQYQDAITQTLWNFYGDSLLANPNGEIDDCLGDREELLI VTLDKKYLKEIKECWKFR >gi|197325098|gb|DS990368.1| GENE 533 536485 - 538335 2372 616 aa, chain + ## HITS:1 COG:jhp0081 KEGG:ns NR:ns ## COG: jhp0081 COG0568 # Protein_GI_number: 15611152 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Helicobacter pylori J99 # 5 614 69 679 681 707 70.0 0 MSVKNINQQLEELFQSDSKYVSYEKIAQVLTKLPTAAQAKRVAELAKKYKKQLMSASEVA KLLNQDEARKIKEDKKRLLDEELEDEFDFMKERELLEWSRSDSPVRMYLREMGQIPLLTR EDEVELSKNIELGENIILDAICSVPYLIDFILDYKEALINRERRVKELFKSFDDEDEEGN ESDDEELEEEQEQEEESGKKPISKKDQKRVEKVLVSFKALEKAKKDWLKTWEQEQGEENG DMLYLLTLAHKKQFLKEKLLDLGPTSKLITELVKAMENTIKSDEGFDRELKRLEYRLPLF NDILLANHKKILDNITEMNKSDIIAAVPEATMVSTYMEIKKLFQTKLASEGSFDLEPEKL KQILEQIKRGKDIADRAKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDK FEYKKGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRINKIMRKYLQEEGKEP DIDKIAEEVGLPVDKVKNVIKITKEPISLEAPIGNGEDGKFGDFVEDKGSVGPMESILKE DLKEQIDDVLDQLNEREKAVIRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKK LKHPKVGRKLKNYIED >gi|197325098|gb|DS990368.1| GENE 534 538410 - 541925 3842 1171 aa, chain + ## HITS:1 COG:HP1460 KEGG:ns NR:ns ## COG: HP1460 COG0587 # Protein_GI_number: 15646069 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Helicobacter pylori 26695 # 14 1171 6 1209 1211 1392 60.0 0 MSKTPNEIITPQISFTHLHLHTEYSLLDGLNKIKVLAKRIKELGMDSVAITDHGNMFGAI EFYKAMKEQGIKPILGMEAYLHNAEEISDKSNQRFHLCLYAKNLEGYKNLMYLSSQACLY GYYMKPRISKKMLREHSAGLICSSACLNGEVQWHLNVKKDDNKGRKGYERAKEVALEYQD IFGEDFYLELMRHGIEEQQLIDNQILQISLETGIKIIATNDTHYTKQSDSTAQEVAFCIG FGKDFNDPNRMRHTVQEFYIKSPEEMAQLYADFPEALANTQEIANKCNLELHLGDPTPPS FKFTAEYAKAENLDFTQDSEYFAYKCREGLKKRLLNIPQEKHQEYTERLEREIEIINKMK FPGYMLIVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPMKYDLLFERFLNPER VSMPDIDMDFCQSRREEILEYVTEKYGRHNVAQVITFGMMKAKAVIRDVARVMGMPYGEA DSFAKLIPKDLDITLEKAYEKEPKIKELIEKNPLAKKIWDFAVILENTKRNPGTHAAAVV IDSENELWHKAPLYRSSRDGIIATQYSMKYLEDVDLIKFDFLGLKTLTLIDDALKLIKNR HHLEIDFLKLDVDDKKVYETLQSGNTLGIFQIESSMFQGINKRLKPSTFEDIIAIIALGR PGPMESGMVSDFIDRKHGKAPIVYMFPELEPILKPTYGTIVYQEQVMQIVQRIGGFSLGE ADLIRRAMGKKDAQIMADNKNKFAQGAQSQGFDKAKAEELWELIVKFAGYGFNKSHSAAY AMLTFETAYLKTYYPKEFMAALLTSEKNATEKIVEYIEEANKMDIKVLPPNLQKSELEFS VAKIEGEDCILFGLGAIKGAGEVAINVILEERKNNGEFKDLEDFLARIDPQKVNKKSLES FIKSGAMDCFNYTRKTLLEQVEILTESARVAQTARKEAENSLFGDSEEFTSVALELENKG EFDKKQILEFEKESLGFYASGHPLENYKEIIKSIDCVYTNQIQDIAENSHILLIGSIEDV ITKFSKTGKRYGILKLQDLYGSIELTIFEKTLLALEEMDKEIPIAVKCMVQEQNDSKSLK AEKILSLEEAQKEKVDFVVQKADTNNPLILLINSQINKQILQNLREAAIRHQGKRELRIL FKTETQELEMASAFFVHSQIKEEFKELEWID >gi|197325098|gb|DS990368.1| GENE 535 541913 - 542284 286 123 aa, chain + ## HITS:1 COG:no KEGG:WS1982 NR:ns ## KEGG: WS1982 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 6 123 4 119 119 63 33.0 2e-09 MDRLDLSHFSIGANFEDTIDVLCKKCGNLQSQCVCKKKAEIKDRDSYFLWVKEQKCKGKD ITLCGVIYESSENIIKMLKEIKKALACGGSFKEDLGGYVLEFQGKHLEKLKAFLKKEKFK FKK >gi|197325098|gb|DS990368.1| GENE 536 542289 - 543041 788 250 aa, chain + ## HITS:1 COG:HP1459 KEGG:ns NR:ns ## COG: HP1459 COG1187 # Protein_GI_number: 15646068 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Helicobacter pylori 26695 # 1 247 6 253 262 253 55.0 3e-67 MRLNQYIAHHSKFSRREADQLIKEGKVSINKEIIKDFSYQVKNHTKVYVNGKCLKEKEEY TVIVYNKPKGELVSKRDDRGRRVIYESLPKRFKDFIPIGRLDFASEGLLLLTDSVKVATK LMESKLERVYLLKLSGEIKEEVFEAMENGLSLQDARLGGHQKSKIKAMEFSPFMGYWVSK NTAKLSKIKVAINEGKNRELRRFFAHFNLKVLDLKRVAYGFVSLNNLPTQKVRFLERGEY NKLHKFLEED >gi|197325098|gb|DS990368.1| GENE 537 543038 - 543568 473 176 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 [Burkholderia pseudomallei 305] # 6 176 2 188 194 186 54 1e-45 MNQAKIGILTLSDRASAGVYEDISGQAIINTLKDYLTSPWESVYRLIGDDLEQIKSQLIE LADIEKCDLIVTTGETGPAIRDVTPEATEAVCQKMLPGFGELMRQTSLKYVPTAILSRQT AGIRNQTLILNLPGKPKSIRECLDAVFPAIPYCLDLIGAAYLQTNPDIIKAFRPKS >gi|197325098|gb|DS990368.1| GENE 538 543565 - 544050 386 161 aa, chain - ## HITS:1 COG:Cj0841c KEGG:ns NR:ns ## COG: Cj0841c COG1763 # Protein_GI_number: 15792179 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein # Organism: Campylobacter jejuni # 4 161 6 160 163 107 43.0 1e-23 MKAIAFSGNSNSGKTTLIQKLSLLLTPTKRVCIIKHDPKNKASIDTEGKDSDIFYKTGAD IAILSPSQTTLRFHQGLNLESLIQKFGDCDYLFVEGLKELPLPRICVARGIFDERFLPFS NALAIDDSINRDLLPKNIPLLNLNNPQEILNWININIKDYK >gi|197325098|gb|DS990368.1| GENE 539 544047 - 544487 532 146 aa, chain - ## HITS:1 COG:Cj1518 KEGG:ns NR:ns ## COG: Cj1518 COG0314 # Protein_GI_number: 15792831 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin converting factor, large subunit # Organism: Campylobacter jejuni # 5 146 6 147 148 149 52.0 2e-36 MGLEIFDGALNTAQIYQKWYDFASQNNLGANSIFTGIVRAENGCDGLSFDIYEPLLEQWF LGWSKKVLENGVFLKMAHSRGDVFNHQSSYMAGIFSLKRRACLEVFEDFVEDFKHKAPIW KYDLKNGARIYAKERSYKLPFSGILQ >gi|197325098|gb|DS990368.1| GENE 540 544502 - 544723 436 73 aa, chain - ## HITS:1 COG:HP0801 KEGG:ns NR:ns ## COG: HP0801 COG1977 # Protein_GI_number: 15645420 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin converting factor, small subunit # Organism: Helicobacter pylori 26695 # 1 73 2 74 74 78 47.0 3e-15 MIEVELLGPLGNQKFTSNAKDFYALKQELQQDSNIQAWLKDCAIALNDEIVQSLDTPLKD GDKVVILPPVCGG >gi|197325098|gb|DS990368.1| GENE 541 544735 - 545058 282 107 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418180|ref|ZP_03656186.1| ## NR: gi|224418180|ref|ZP_03656186.1| hypothetical protein HcanM9_02773 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0858 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0858 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 107 1 107 107 166 100.0 4e-40 MKSTFLKPLILSFCVGALSSYLYADTFVAFHPKPKLQIAALDNFDKSLQKEMQKYPKGTA FMVDARTGKIIATTPQNKPMPKAQAPKPPKKEKTPPYNMNEEYIELL >gi|197325098|gb|DS990368.1| GENE 542 545139 - 545513 590 124 aa, chain + ## HITS:1 COG:BS_yabJ KEGG:ns NR:ns ## COG: BS_yabJ COG0251 # Protein_GI_number: 16077116 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Bacillus subtilis # 1 122 1 123 125 130 56.0 7e-31 MLEITATKKAPQAIGPYSQAISANGIIYTSGQIGLTPSGELVQGIEAQTRQVLENLSEVL KASNSGLSQVIKTTIFLSDMEHFGIVNGIYAEFFGDHKPARSTVAVKTLPKDALVEIECI ALQN >gi|197325098|gb|DS990368.1| GENE 543 545608 - 545919 516 103 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224418182|ref|ZP_03656188.1| 50S ribosomal protein L21 [Helicobacter canadensis MIT 98-5491] # 1 103 1 103 103 203 100 2e-50 MYAIIQNGGKQYKVSEGDILLLDCLNLEPKSKVEVNEVLALFDNGDVKLGSPYVSGAKVE LEVINEGRGKKVITFKKRRRKDSKTKRGFRRDFTRVRVIKIAA >gi|197325098|gb|DS990368.1| GENE 544 545941 - 546198 441 85 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224418183|ref|ZP_03656189.1| 50S ribosomal protein L27 [Helicobacter canadensis MIT 98-5491] # 1 85 1 85 85 174 100 8e-42 MAHKKGQGSTQNNRDSAGRRLGVKKFGGQFVRAGNIIIRQRGTKVHPGNNVGMGKDHTIF ALIDGVVSFERKDRNRKKVSIYPAS >gi|197325098|gb|DS990368.1| GENE 545 546252 - 547352 1305 366 aa, chain + ## HITS:1 COG:HP0303 KEGG:ns NR:ns ## COG: HP0303 COG0536 # Protein_GI_number: 15644931 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Helicobacter pylori 26695 # 1 354 1 359 360 345 57.0 6e-95 MFVDRVEIFVSSGKGGEGAVSFHREKFVINGGPDGGDGGKGGNVYFIVDRNTDTLSHFRG HKHFKAQNGKPGLGRNKYGKKGEDLVISVPPGTQVFDSESGELLLDLVEESKKILFLEGG KGGLGNVHFKSATNQRPTYAQKGMSGIEKKIRLELKLIADVGLVGFPNVGKSTLVSVVSN AKPEIANYEFTTLIPSLGIVNLGDYHSFVIADIPGIIGGASEGKGLGLEFLRHIERTRFL LFVLDIANYRSIEEQFMILRQELEKFSTQLARRPFGIMLSKSDAKEEKKPILINFLKHLE ITLKRHQEVTNCYVQQNREDFENYDYLKPIFVICASSVNGENIESLKHLLYESLKEAKKE CVNAEK >gi|197325098|gb|DS990368.1| GENE 546 547339 - 548115 925 258 aa, chain + ## HITS:1 COG:Cj0097 KEGG:ns NR:ns ## COG: Cj0097 COG0263 # Protein_GI_number: 15791485 # Func_class: E Amino acid transport and metabolism # Function: Glutamate 5-kinase # Organism: Campylobacter jejuni # 5 257 3 251 251 236 50.0 2e-62 MQKSRVVIKVGSALLVKNQLIDKERMEALASLIAKLRQKYEVILVSSGAVAAGFTKVKLN KGNLANKQALAAIGQPLLMQTYAEIFAFFGIATAQVLLSAYDFDSRKRTQNARNAMEVLL QNEVLPIINENDVTATGELSLLLEFGDNDQLSAHVTHFFNADILAILSDIEGYYNENPSI NPAAKIYPKVSEISAETLKEQATPNNAFATGGIVTKLKAADFLLQNHRKMFLSSGKRLEV LEKFLLEGIQVSGTLFEK >gi|197325098|gb|DS990368.1| GENE 547 548137 - 549039 836 300 aa, chain + ## HITS:1 COG:jhp1069 KEGG:ns NR:ns ## COG: jhp1069 COG0223 # Protein_GI_number: 15612134 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Helicobacter pylori J99 # 1 299 1 304 305 257 49.0 2e-68 MNIVFMGTPSYAAVILESLLKKHTLKALVCQPDKKAGRDMRLKMPATKELLLQQGLEIPI FQPAVLDEGFLETLKQIDFDMIVVAAFGKILPKSILELAPCVNLHASILPKFRGASPIQE SILEDENFFGVTLMQMEEGLDSGDILGFRILKNRGQNARELFAELSEAAAKLTLDYLERW KVIIPMKQNNADSSYCKKIKKEMSLVDFSEARSLYLKALAYEGWPEIFLQSGLKLKKVLL KENESINKAGEILGILEDKILVGCLRGSVWIQALQAPSKRIVNAYEYLQGKRLKKGDILE >gi|197325098|gb|DS990368.1| GENE 548 549039 - 549671 540 210 aa, chain + ## HITS:1 COG:jhp1068 KEGG:ns NR:ns ## COG: jhp1068 COG0340 # Protein_GI_number: 15612133 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Helicobacter pylori J99 # 2 204 5 207 212 195 49.0 6e-50 MEILTFESLPSTHLFLSEKIRSGELKAPIMVVAHQQNSGIGSRGNTWNAVKEGLYFSFAI AEEELPSDLAIESVSIYFGYLFKEVLVELGSQVFLKWPNDLYLGEKKIGGILCTKISQNI LVGIGLNLVVEDSAFGALDISVSKEQILDFFIKKIKIYTWKQIFSKYKLEFSRNFYYNFH YQDEQISLKDAKLLEDGSILLKGRRIYSLR >gi|197325098|gb|DS990368.1| GENE 549 549690 - 550475 947 261 aa, chain + ## HITS:1 COG:Cj0100 KEGG:ns NR:ns ## COG: Cj0100 COG1192 # Protein_GI_number: 15791488 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Campylobacter jejuni # 1 258 1 260 261 338 67.0 6e-93 MCEVICIANQKGGVGKTTTAVNLAASLAVEEKKVLLIDADPQANATTSLGFHRNDIEYNI YHVLIGTKQLSQIIQKTSIPTLFLAPSNIGLVGIEKEFYSQKRNGRELLLKKKIEEVGSL YDYIIIDSPPALGPLTINALSASHSVIIPIQCEFFALEGLAQLLNTIKLLRKEINPDLKI KGLLPTMYSGQNNLSRQVFTDLLQHFEGQLIKNDTENVIAIPRNIKLAESPSFGKPVILY DVRSQGNIAYQSLAKAILERA >gi|197325098|gb|DS990368.1| GENE 550 550475 - 551368 851 297 aa, chain + ## HITS:1 COG:HP1138 KEGG:ns NR:ns ## COG: HP1138 COG1475 # Protein_GI_number: 15645752 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Helicobacter pylori 26695 # 1 290 1 286 290 230 48.0 2e-60 MAKSAGLGRGLSAILGEVEEAYQNNLNDNSGLVVEIEADKIKANPLQPRKVFDDESLQEL ADSIQEYGLLQPILVYEDSKKSDEYFLIAGERRLRASKIAKKETIKAIIVDVQETKLREL ALIENIQREDLNPIDLAQSYRELIEDYGITHEEVAKRLSKSRAQITNTLRLLDLENEVQK YIIENKISQGHAKILVTLPKEKQLMVADSIVGQKLSVHETEAIVRNIKGAKPMDASRKVS LNKKTISPQSQNELMKICQMMQGNKLKANLRKNCFIVEFSNDEEVERFIKILPNPSF >gi|197325098|gb|DS990368.1| GENE 551 551433 - 551858 463 141 aa, chain + ## HITS:1 COG:Cj0102 KEGG:ns NR:ns ## COG: Cj0102 COG0711 # Protein_GI_number: 15791490 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Campylobacter jejuni # 7 141 7 141 141 64 37.0 6e-11 MTIIPTPWVMALVFFTFLILIYLLNRILYKPLLGFMDARDSSIKKDSEGIEGNAADVKAL KAEAEAILQNARQEASLIKNKAQDNAKQIADTKITQKKEELNSKHNEFIVILEEERKELK NSLLSKIPLFEDSLKAKLLKL >gi|197325098|gb|DS990368.1| GENE 552 551867 - 552382 520 171 aa, chain + ## HITS:1 COG:Cj0103 KEGG:ns NR:ns ## COG: Cj0103 COG0711 # Protein_GI_number: 15791491 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Campylobacter jejuni # 4 171 2 170 170 89 36.0 4e-18 MKKSILFLIAMFSPCVLLAASGNGEVDIIERTINFVIFFALVYYFAAEKIKGVFKERREN IANSLAKIQEKLQESKRERQRAVEELQEAKKVAKDIIEVAHKESAIILQKAEENIKVEIE NLIRQFNESMVFERRKMEKQVIDEILGEFLNKDSVVLPKDVLTQALLRKVA >gi|197325098|gb|DS990368.1| GENE 553 552384 - 552920 459 178 aa, chain + ## HITS:1 COG:Cj0104 KEGG:ns NR:ns ## COG: Cj0104 COG0712 # Protein_GI_number: 15791492 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Campylobacter jejuni # 1 176 1 171 173 66 30.0 2e-11 MKELIAKRYIKAFSKDAVKSELEKDLEFLSTLANAYQISKFKEIVESPYVDISKKVEFIL QVILENKTTQRFSNFIKVLAEHKRLNLFQELYAELFSYIAFLNKEYVANLRVSEKYDEVV LNDIQSQFSKKLGVNLILKQEIVQEIGIKLIVEDLGIEISFSQEKFIQDLRNHIIKAF >gi|197325098|gb|DS990368.1| GENE 554 552941 - 554455 2098 504 aa, chain + ## HITS:1 COG:Cj0105 KEGG:ns NR:ns ## COG: Cj0105 COG0056 # Protein_GI_number: 15791493 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Campylobacter jejuni # 4 503 2 501 501 795 81.0 0 MIAKLQADEISSIIKERIDNFELDLNIAQTGKVIAYADGVAKVYGLKDAMSYEMVEFDTG DKGLASSLEEGSVGVVVLGAGKEIKEGTSVKRLGKLLRVPVGDDLMGRVVNALGEPIDGK GAIEAKEFKFMEEKAPGIMARKSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTTV AIDTIINQKGQDVVCIYVAIGQKESTVAQVVRKLEEHGAMEYTIIVNAPASDSAAMQYLA PYAGVTMGEYFRDNGRHALIVYDDLSKHAVAYREMSLILRRPPGREAFPGDVFYLHSRLL ERAAKVSDELGAGSLTALPIIETQAGDVAAYIPTNVISITDGQIFLETDLFNSGIRPAIN VGLSVSRVGGAAQIKATKQVSGTLRLDLAQYRELQAFAQFASDLDESSRKQLDRGQRMVE VLKQPPYSPLPIERQVVVIFAGARGFMDDISVANITKFEADLYPFLEAKYPQIFEDIRSK KMLDKDIEETLSKALEEFKASFIA >gi|197325098|gb|DS990368.1| GENE 555 554469 - 555353 1031 294 aa, chain + ## HITS:1 COG:jhp1061 KEGG:ns NR:ns ## COG: jhp1061 COG0224 # Protein_GI_number: 15612126 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Helicobacter pylori J99 # 4 294 3 301 301 288 56.0 7e-78 MGNNLKDIRKQISSVLNTQKTTRAMKLVSTSKLKKADEMARRSKTYANKIVEVLGEIKAK VASGENVQDNLYFAPAGETGLVDIVLVTADKGLCGGFNINTIKEVNRIIAEHKAKNAKVR LRVIGKKAIEYYKFNEIEILDSAVGLSATPNYAQAAEFINKAVNDYLQGITSKIILVHNG FKNMISQEMKISQLLPIEGIESSQECSSILEVEPNEQENEVLNQLANKYIEFSMYYALVD SLAAEHSARMQAMDAATNNAGELAKSLTVAYNKARQEAITTELVEINTGVESMK >gi|197325098|gb|DS990368.1| GENE 556 555366 - 556781 1517 471 aa, chain + ## HITS:1 COG:jhp1060 KEGG:ns NR:ns ## COG: jhp1060 COG0055 # Protein_GI_number: 15612125 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Helicobacter pylori J99 # 5 468 4 467 469 794 86.0 0 MSENMIGKIVQVMGPVVDIDFESYLPAINEALDIDFSIDGQSRKLVLEVAAHIGDNRVRA IAMDMTEGLTRGEKVVARGNPIMVPVGEQVLGRIFNVTGDVIDGGEALNNPEKWSIHREA PTFENQSTKTEMFETGIKVVDLLAPYSKGGKVGLFGGAGVGKTVVIMELIHNVAFKHSGY SVFAGVGERTREGNDLYHEMKESGVLDKVALCYGQMNEPPGARNRIAFTGLTMAEYFRDE KGLDVLMFIDNIFRYAQSGAEMSALLGRIPSAVGYQPTLASEMGKLQERITSTKKGSITS VQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEKGIYPAVDPLDSTSRILDPQVVGED HYRVATSVQQVLQKYKDLQDIIAILGMDELSEEDKKVVERARKIEKFLSQPFFVAEVFTG SPGKYVTLQETLEGFKGILEGKYDHIPENAFYMVGNINEVLEKAEKMKAGA >gi|197325098|gb|DS990368.1| GENE 557 556791 - 557183 457 130 aa, chain + ## HITS:1 COG:HP1131 KEGG:ns NR:ns ## COG: HP1131 COG0355 # Protein_GI_number: 15645745 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Helicobacter pylori 26695 # 1 125 2 124 124 111 52.0 3e-25 METLKLDIVTPEGKIFSNNVKSVTLPGSEGEFGVLPGHVGIVTTLDSGVIEIEKQDGKKE IVAINWGYAKVNERSVDILAEGAVDINGDSESEIAQAIANAKKLLEDSTDNKVAASMVVS RIENIAKSIL >gi|197325098|gb|DS990368.1| GENE 558 557180 - 557746 625 188 aa, chain + ## HITS:1 COG:HP1130 KEGG:ns NR:ns ## COG: HP1130 COG0811 # Protein_GI_number: 15645744 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Helicobacter pylori 26695 # 11 185 13 189 189 162 51.0 5e-40 MNWMNLTGNYGMTTIVVLAWLSLYFILVIWIFLYRYFSLNAMIQREKKNVESLLKGKNVL IRDSAFNLNGIDRQKSESLLQYFLNKTIKEATIGLTFLGIVASTAPFIGLFGTVVEILEA FSKLGMESKATLDVIAPIISKALIATAAGILTAIPAYSFNLFLKRKVFDLNTYLQLQVNL LAYSKDKE >gi|197325098|gb|DS990368.1| GENE 559 557816 - 558151 422 111 aa, chain + ## HITS:1 COG:HP1129 KEGG:ns NR:ns ## COG: HP1129 COG0848 # Protein_GI_number: 15645743 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport protein # Organism: Helicobacter pylori 26695 # 1 109 23 131 133 116 55.0 1e-26 MLVLLAILMVTAPVIVYQEEIALPQGSKTSKIQEDSKIEIRVDSQRKIYLKDDILDFRSF PDAFIVFANGYDRNTQVYIRADKNLKYDDVIFILKIAKQSGFSRVSLVTDG >gi|197325098|gb|DS990368.1| GENE 560 558144 - 558896 657 250 aa, chain + ## HITS:1 COG:no KEGG:WS0520 NR:ns ## KEGG: WS0520 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 249 1 244 247 199 46.0 1e-49 MDRIFFLFLSGVVAIFTYLLVVGIFLWHFYASKESPKQYTTYKETSFSVALIEEKREVPK KNNQTPKNKEQEKAKEIPIKEENASRTANVGLGINNLFQQVEAKREVPKEALKPQSQNDK IARRKKALESMQKREDNLKENIEKIVSNLEIKKTMGFLAPKGEYDEFYAKVQEILYENWN PIQTQNENRAEIQITIDWQGKFSYKIVKLSGNLEFDKALQEFLDIMQNKEFPKYEGGDST NIIVTFKTEV >gi|197325098|gb|DS990368.1| GENE 561 558897 - 560177 1215 426 aa, chain + ## HITS:1 COG:jhp1055 KEGG:ns NR:ns ## COG: jhp1055 COG0823 # Protein_GI_number: 15612120 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Periplasmic component of the Tol biopolymer transport system # Organism: Helicobacter pylori J99 # 3 426 2 417 417 322 43.0 1e-87 MKKICFLFLMSLSFVFANQNIDATLEVVKKFGNLPNILVQYTGKDYNQREYTLKVFKMLI ADLKVTGHFAVQEGEGLSGAMAINFDEYRKSKVDLVANVSAEVIRDGLIVNLQLYDVNAG NLVLNKEYKSSQLPAYPFLAHKLAVDINDYIKAPSVDWMQRMVVVSYYTKSGESEIISSD YTLTYKNTLISGGLNIFPKWANEEQSAFYYTKYLDKPTLFKFDLITGENKQILSSEGMLV ASDVSKDSNRLLLTMAPNEQADIYLYDLSNGTLKKLTNYRGIDVSANFIEDEKRVMFISD RLGYPNVFAISVDGESAGSVEQMVFHGRNNNAANAYGNYIVYSSRETSEEFGSNTFNLYL VSTKSDFIRRLSANGVNQLPRFAKDGETIMYIKHENNQSALGIIRLNYNKTLLFPLRGGI IQSIDW >gi|197325098|gb|DS990368.1| GENE 562 560254 - 560778 763 174 aa, chain + ## HITS:1 COG:Cj0113 KEGG:ns NR:ns ## COG: Cj0113 COG2885 # Protein_GI_number: 15791501 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Campylobacter jejuni # 3 172 2 163 165 139 47.0 2e-33 MKKSLVFGSLVAALLMVGCSQKSGNVGTSSAQDSTANQGVSQGYVGGRDNFVNLEERIQY VEGGLQNVFFNFDQFVIRADMQNVVDNDANVLKDVSAAPLSVRVEGNTDEWGTDEYNYAL GLKRAVAVKEALVAKGVSESKIVLVSYGESKPTCTQKTRECWAENRKVTFKMLP >gi|197325098|gb|DS990368.1| GENE 563 560794 - 561678 672 294 aa, chain + ## HITS:1 COG:no KEGG:WS0523 NR:ns ## KEGG: WS0523 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 30 294 29 319 319 173 42.0 8e-42 MQKQICVSLVLINFLLAQEPSAFNAGGDTPMKTKEQILDEKLFNLSAKVKDIEVSQEGLK SVFEGQLQRIQEVSRQLNTRINDNNATIMSIKEHMETNFSTQNENIQKLQESITALGELI QKVDTQTKAEIDVIKKMLLDETQQENKIEAKEVKKNASNASKQIDNGKTAEKLKDKPLAE VFAEGEKLLEQKEYKLASEYLQKAVEGHYKPARGNYLLGESAFYQKKYEDAIYYYKVSAE RYDKADYMPLLMLHTAQAFEKINNKENALKFLESLVVLYPDSKEAQEAKKLLSK >gi|197325098|gb|DS990368.1| GENE 564 561694 - 562209 933 171 aa, chain + ## HITS:1 COG:HP1123 KEGG:ns NR:ns ## COG: HP1123 COG1047 # Protein_GI_number: 15645737 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 2 # Organism: Helicobacter pylori 26695 # 6 147 11 152 185 159 56.0 2e-39 MIEKNQVVSIEYEVRENGKEAVLDSNIGGKPLEFIMGAGEIIKGLEEAVAEMSVGDKKQV IIAPVNAYGEYISDYVQEVPRDQFTGIDLQEGMTLFGQGENGQTVQVVVKGFNDEVVMVD YNHPLAGKELDFSVTILGVRMATEKELTYGLHHQEQHGQGGGCCGGGCGCH >gi|197325098|gb|DS990368.1| GENE 565 562242 - 562889 464 215 aa, chain + ## HITS:1 COG:HP0926 KEGG:ns NR:ns ## COG: HP0926 COG0585 # Protein_GI_number: 15645542 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Helicobacter pylori 26695 # 1 206 6 213 381 196 50.0 2e-50 MDYSYAYTHSKIDFYFKQSSRDFVVEEIPLYPFDGEGAHWVVKIRKKNFTTFELIKFFSS YFGIKSSEIGYAGLKDKNALTIQYLSLPKHLLNQKLLENFNHTEIKILDITKHCNKIKIG HLKGNKFFIRLKKLDKLNYQKMQQVVDKIKKFGIPNYFSYQRFGKTLDNYLLGQEIVNGK RKIRDKKMQNFFISAYQSHLFNEWLSLTPQAFSFN >gi|197325098|gb|DS990368.1| GENE 566 562927 - 563376 262 149 aa, chain + ## HITS:1 COG:HP0926 KEGG:ns NR:ns ## COG: HP0926 COG0585 # Protein_GI_number: 15645542 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Helicobacter pylori 26695 # 13 144 241 374 381 107 44.0 6e-24 MQFENEAIPQVFLDKEYCKTLKQQEHFFKLFNGDYLCHYPFGKNFLTQEETIIKDSQRFI EKDIVPTGLLSGSKVQISEKEAGFFENLFVDNKIKSVGQRRYAWIFPENLTLSYKEEEAQ GELEFFLPKGAYATNLLRELAHSEIIGEE >gi|197325098|gb|DS990368.1| GENE 567 563376 - 564299 1250 307 aa, chain + ## HITS:1 COG:jhp0861 KEGG:ns NR:ns ## COG: jhp0861 COG0501 # Protein_GI_number: 15611928 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Helicobacter pylori J99 # 2 304 4 305 310 326 57.0 3e-89 MFDKIIQENRFKTQCVIVLYVAIFIIIGLLVDIVRINASSLLGGFYVLITFQKIPIVTLC LLAIACGIVFYTIRHFKGILLSGNEYKEIVKGFEETLQERELSKILDELVREARLDFRPK LYLMDAPFMNAFASGWSMHNSLIALTTTLVRNLKRDEVKAVMAHELSHIRHGDIRLTLMV GVLSNIMLLVVNYGVYMFLGNSRERGANMARTILIVLQFVLPLLTLVLQMFLSRSREYMA DSGAAYLMGDSMPMIRALQKISGSYVQSDFSNVDTNPTRSALYIVGFKEIFSTHPSIENR IKALLGK >gi|197325098|gb|DS990368.1| GENE 568 564309 - 564851 640 180 aa, chain + ## HITS:1 COG:jhp0863 KEGG:ns NR:ns ## COG: jhp0863 COG0302 # Protein_GI_number: 15611930 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Helicobacter pylori J99 # 1 175 1 175 180 227 58.0 1e-59 MEDYIKAFFDHIGEDKEREGLLETPKRVIKSWEHLYSGYKSDPKEVLGKCFSDGACDEMV VLKNIEFYSVCEHHLLPFFGKISIGYIPNAKVVGISKLARLVEVFSRRLQIQEKMTGQIA DTIMEVLQAKGAMVVAEAQHMCMVMRGVEKQNSMMITSAVRGLFKSDHRTIEEFMGHIRN >gi|197325098|gb|DS990368.1| GENE 569 564867 - 565766 1004 299 aa, chain - ## HITS:1 COG:HP0292 KEGG:ns NR:ns ## COG: HP0292 COG4866 # Protein_GI_number: 15644920 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Helicobacter pylori 26695 # 3 299 2 289 290 209 43.0 4e-54 MQWKPIGIEDKETFDSFFANNKILVSDLTFTNLYLWHYSRHISYIILNDCLIIKTQYPNE NPFIFYPLHKENNLEAKKQSILDMMSHCKANGLDFSIHSLSKIDKEELELLLPNTFVFTY REDRSDYIYSIPELIELKGKKYHKKKTHLNRFVERYHFSYESLTPDNAKTLINTYQEWFG KISDNASNGLKNEYIGIIESLKALERLKFDGGILRIDEKIIAFSFGEPLNDNTIVIHIEK ADTEYQGAYQAINREFLAHQWKDYALVNREEDLGIEGLRKAKQSYQPLFLQKKFDASLK >gi|197325098|gb|DS990368.1| GENE 570 565809 - 566060 423 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418209|ref|ZP_03656215.1| ## NR: gi|224418209|ref|ZP_03656215.1| hypothetical protein HcanM9_02918 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0886 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0886 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 83 1 83 83 124 100.0 2e-27 MNWLNELKVAYLNRNDAKITELMANTPVLKTRDEMFEALAVLEQIGEYARAQKAKLAEEM RKLKQTKNFLPKQERVQKLNLSF >gi|197325098|gb|DS990368.1| GENE 571 566047 - 566427 548 126 aa, chain - ## HITS:1 COG:HP0753 KEGG:ns NR:ns ## COG: HP0753 COG1516 # Protein_GI_number: 15645372 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport; O Posttranslational modification, protein turnover, chaperones # Function: Flagellin-specific chaperone FliS # Organism: Helicobacter pylori 26695 # 6 126 6 126 126 176 75.0 8e-45 MKGNLAYSSYQQNSVAVESPAKLVEMLYEGILRFASMAKRCIDANDIEKKIYYINRTTDI FVELLNSLDYEKGGQVAHYLTGLYTHQIKLLTQANMENSKEKIDIVIKVAKGLLEAWKEV NQNELA >gi|197325098|gb|DS990368.1| GENE 572 566448 - 568517 2926 689 aa, chain - ## HITS:1 COG:jhp0689 KEGG:ns NR:ns ## COG: jhp0689 COG1345 # Protein_GI_number: 15611756 # Func_class: N Cell motility # Function: Flagellar capping protein # Organism: Helicobacter pylori J99 # 15 686 16 680 685 408 39.0 1e-113 MALGTQSVLGISSNLTWDVIEQMKDLDVSNQIDPITKKIEKNMEQQTELTSLLTMMTSLN TSFKNLSDYSTYQRRQASVDGNGVKATAGDGLAIQDITINVSQLAQNDVNQVGLKFASRD SVFSNENTTLDFYHNGTNYSIDIKAGMTLSDVAQSITDATNGEVMGIIMKTGGDNPYQLM IQSKNSGADNKVYFGSTLESAAAPGGKITQGTLEIEIGGQTISVDMKNIGSDYGNTAEDN AKLIVEAINKEIEKNPTLKDKVDSGEITIGLNSSGKGIMLNDSSGGAINVNVKDVKFQAS NGTSETATDLGFSKKSVGSDTGLVDMKITAGALNGIFTINGKEFDLSNLTKAGNTAEQNF TSIMDAINNDADLQKAGITASGDSTKGTLTLNSNNGQTINIAAKGADASAQQKVLDSIGL TAGSYTSSKSFLDKMDITNIQKAQDAKLTYNGIPIERDTNSIDDIVSGLSLELTSVTETG KDVIVRIARDDEGIAEEMKAFVESYNEMYNKLQELTKYDEETEIAGVFNGNSEIRSITRQ LNSIINSTDANGNSLIKYGVYMNEDGTLTFEEDTFNTAFKEDPDAAVEFFRSSTKTVKGE SVEIDGVFTQLRNTMDSLITGSNSTLKILESTLVNEQKTLNDDKTSTQESIDNKYDIMAE RWSAYDQMIAQMQQSSNTITQLINQSMNS >gi|197325098|gb|DS990368.1| GENE 573 568530 - 568898 567 122 aa, chain - ## HITS:1 COG:Cj0547 KEGG:ns NR:ns ## COG: Cj0547 COG1334 # Protein_GI_number: 15791908 # Func_class: N Cell motility # Function: Uncharacterized flagellar protein FlaG # Organism: Campylobacter jejuni # 24 122 21 121 121 64 41.0 5e-11 MNIAESGMNVASMQINPYQQGNNTSQTSSSEIQQQRLQTQEEKGNTEEQKQKLNELAQQL NKELSPLNTSIAFNFSEDIEGLYITVSEKDTNRLIRKIPSDEAMQLMAKMKEIVGMIFDK QA >gi|197325098|gb|DS990368.1| GENE 574 568973 - 570202 1514 409 aa, chain - ## HITS:1 COG:HP0750 KEGG:ns NR:ns ## COG: HP0750 COG0739 # Protein_GI_number: 15645369 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Helicobacter pylori 26695 # 4 405 7 398 400 218 37.0 2e-56 MLRFFLILLCLIQLQANQEINQKISKNKTALENQKKKEEQVNQKLQELGKEVNKQKEELN TIENIIKESEKNISKNQQEYSKKETLIKTLSLKQESFYQKRKNIELAIIDLVAKDISFAI LLNDFQPESIKDLVTEESFKVLNNTTKKELTNLSQQQTQIIQDLQTLQKEIVQLQSFIDS ENKKRAHLKDLQTKQKRVLETYQKEIDKYNQELQQITKERDSLQEILVQLNILKSQEEEK RKKREELAKSKDTSTPKNTQNDFDVRQVASSYHNISTTKYKGAKTIAPLDDFKIDKRFGP YYDPVYKMKVFNESITLISTGDDKVKSVLDGKVVFAKDTPILKKVVIIEHQNNMHTIYAQ LDKIAPTIKPGSVVKKGYTIGRINNTLKFEVTLKDKHIDPLELISEKNL >gi|197325098|gb|DS990368.1| GENE 575 570204 - 571010 845 268 aa, chain - ## HITS:1 COG:no KEGG:WS0147 NR:ns ## KEGG: WS0147 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: ABC transporters [PATH:wsu02010] # 1 267 1 267 268 266 53.0 5e-70 MNSLKNHLSLIIPLVALLFALESILLVHRTLNNYESKLGKNYAIVLASLKELKLQDLKEK ISEAKTLTPIDSEVILERLKDNISQANLVVLKNTLPHFYSLNLDTYPSTSRLEVIDKTLK SIDGIIRIETFTKSHSQIYQLLLIINSSVIIFSSLIALISLLLMFKQIEIWKFQHLERME IMTLLGAPLWMRSQILFRLACLDTIIATALVCVGLFYLSQNPMLLIFMQELGLDSVIFSP FYDSIVLLLVGLSVSLIAVWIVSLQQRD >gi|197325098|gb|DS990368.1| GENE 576 570997 - 571665 624 222 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 222 1 223 223 244 54 5e-63 MDAIIKAEGINLGYKDEMIIKNASFNIFPQEFVFISGPSGSGKSTLIRSIYGDLPLKSGS LEVCGMEMLKASKKNIETLRRHLGIIFQDYKLIKDFNVEKNVMLPMIIGGFTKESCKAQT DRLLAHIKLSHKGNKYPLELSGGEQQRVAMARALSHNPLLILADEPTGNLDDYSSEVIWS LLKGVNEQLGITIVVVTHRIPETFGIRYRHLHIEEGVIYELS >gi|197325098|gb|DS990368.1| GENE 577 571668 - 572897 1029 409 aa, chain - ## HITS:1 COG:Cj1278c KEGG:ns NR:ns ## COG: Cj1278c COG0220 # Protein_GI_number: 15792602 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Campylobacter jejuni # 1 404 1 390 392 220 36.0 3e-57 MPHFKTHSLTLPALPFSLETKEGKFSFLELFTSTNQPNFSLLQVHFTPKDSHLKNKDFFL EIKKSKQETIVKCDKNSKIAPIGIMKKSLEILANHQDSLNTHNLNSKNTLHTNKLPFIKH IEDFLDFDSLLTNQDLKNPKIWLEIGFGSGRHLLHNTKQYPQILHIGLEIHYPSLEQVAR QIELYNLKNVLILAYDARIFLELLPSNVLEKIFVHFPVPWDKKPHRRIFSTPFLSQASRV LTTQGHLQLRTDSLEYFNYAKNLALSNPNFTLNHSKNSQETIISKYEARWLKQKKDIYNL ELFATQNSPQISLDYHFDFPNKSQIQTPFQPSKIIKEGYFLHLEDLLLSPNHKLFKISFG DFNYPETRYILEDSSLHYFRENPLPTKINHQAHHLLKELLQTNFTKEAK >gi|197325098|gb|DS990368.1| GENE 578 572897 - 574162 1303 421 aa, chain - ## HITS:1 COG:Cj1279c KEGG:ns NR:ns ## COG: Cj1279c COG3401 # Protein_GI_number: 15792603 # Func_class: R General function prediction only # Function: Fibronectin type 3 domain-containing protein # Organism: Campylobacter jejuni # 10 414 2 407 411 225 33.0 2e-58 MITLSYSFKMDSLRMKILSLFILIFFSACSSSNLNFGSTPSINPNITPPDNIRTLSDVNT IAFEWNLIQNPEIAGYYIYRKKPNEQSFSKIATLDSRFITHYADNKLESNTEYLYQFASF DAQKNISQFSSPISAKTQFIEAINYVEAISNYPRKVKIIWNPHQDTRVIGYVIEKKKPNG QWSELANINSRLLVEYLDIGLEDNTSYEYRVFAYNTNKTYSLPSKSVKATTKPKPTPITN FTATTNIPKQITLKWDLHPNPEITQYNLFRSNFESSFFSKLATLPNNTDTYQDAIKDDGK QYYYKITATDKDGIESLEVGPIMGMTLGIPNTPVITYAQIEGDSAVLRWTPQDDRATEYI VYKKDSRFFGETLRYNKVLTPEFIDREVIPGEKYYYRVSAVDANGLESKQTQEIMLFLPT Q >gi|197325098|gb|DS990368.1| GENE 579 574256 - 575215 658 319 aa, chain - ## HITS:1 COG:Cj1280c KEGG:ns NR:ns ## COG: Cj1280c COG0564 # Protein_GI_number: 15792604 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Campylobacter jejuni # 2 301 11 313 322 250 44.0 3e-66 MRLDKFLTQKLGLSRNQISKIIQEKQITLNGVFIQKNGTSLNFNDQIILTLPNKQEKSKP NHLNIPILYEDEDLLILNKPINLIVHQTHQDDSQYTLQDWLQENNFSLSNLGDSYRQGII HRLDKTTSGAIVIAKNNYAHEILSQQLKSKEMGRYYVCVIDSPLKQNILIDAPLIRHPKN RLKYIPTTKDTPLSKEAKTAFFKIINNDKIELIGAKLFSGRTHQIRAHLSKIQRHILGDV FYGYKGNYTARILLHSHLVYLTHPTTKQRLEIYAPLWEDMLLFLHQEFYSSQSYENFAKN FKIPLEQLYWLNFQTSNLS >gi|197325098|gb|DS990368.1| GENE 580 575552 - 576487 986 311 aa, chain + ## HITS:1 COG:Cj1282 KEGG:ns NR:ns ## COG: Cj1282 COG0772 # Protein_GI_number: 15792605 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Campylobacter jejuni # 3 293 66 357 366 325 60.0 7e-89 MSWAIVIFYWINIVLLVAVDFFGDVRLGAQRWLEIPFVHFTFQPSETMKPALILMLAHLI AKNPPKGGGYKFFSFLKFSWYILLPFVLILKQPDLGTALVLLIMGFGVLFLIGVNYKIWL TLLVGFCLLSPILYANLHDYQKKRIEDFISKEPDYQVRQSIIAVGAGGLDGKEKEEATQT IYRFLPIATSDFIFPYFAERFGFLGIIGLFILYAFLIFHIFSMGSIDAKDYFLRVIAYCA GLLVFVYSGVNIAMTIGLAPVVGIPLPLFSYGGSSFITFMILFGLLEHLLAFKNNFVYNY ASKNFLKKLAS >gi|197325098|gb|DS990368.1| GENE 581 576583 - 576804 391 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310706|ref|ZP_04809861.1| ## NR: gi|242310706|ref|ZP_04809861.1| predicted protein [Helicobacter pullorum MIT 98-5489] predicted protein [Helicobacter pullorum MIT 98-5489] # 1 73 1 73 73 109 87.0 8e-23 MKIQCVNIKCQGCVNKIQESLGQKYPSLRVDIPSQSVEVEASEEELKEIKTKLQELGFLT SEGIMGKIKGFFK >gi|197325098|gb|DS990368.1| GENE 582 576820 - 577647 1056 275 aa, chain + ## HITS:1 COG:Cj0954c KEGG:ns NR:ns ## COG: Cj0954c COG1076 # Protein_GI_number: 15792283 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-domain-containing proteins 1 # Organism: Campylobacter jejuni # 67 268 60 253 256 82 29.0 9e-16 MEILLLITIVIIAVAFINFKDYLSNPHKRPQIQDSNNTFNEEFQSYEDPYKTLSKEEKIR KSEYGIMVSLMSKLAQSDGKVCELEEELMENTIEDIAQAILLQSAMNQKQEILEILHTIF RNTTEDVETLSLAYAELTKGQYKSRLKLVEYLLSLAYADGILGEKEREVILDVAAYLEIQ NDDFNALYDSFVEFYSRELVYQDYKEACATLGVSEDSDMETIKKAYKDLVRQYHPDILHH KGLEESIIKNYTEKLQKINAAYEVIKKHKKEQGGE >gi|197325098|gb|DS990368.1| GENE 583 577637 - 577894 246 85 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|253827548|ref|ZP_04870433.1| ## NR: gi|253827548|ref|ZP_04870433.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] # 1 82 1 82 637 150 100.0 4e-35 MENKILLDIATLYRYLEEENRKTNGLYESIKSDIPIFLKPIFKKMPVNQETLLALIDRVV ALKEGALLNVLNKLQFKEEEILLAS >gi|197325098|gb|DS990368.1| GENE 584 578029 - 579681 1777 550 aa, chain + ## HITS:1 COG:no KEGG:WS1211 NR:ns ## KEGG: WS1211 # Name: not_defined # Def: CiaB protein # Organism: W.succinogenes # Pathway: not_defined # 6 530 98 611 621 446 47.0 1e-123 MLRITEDFYVKRHQKLLEFVKDRNLLTPFLRELLVSVHQVGLVFNSFFINWQEKLILGIN KDLSQKFNNDLPSILEALKSAQEISQNGEVSDRSYSVPVLKEGKYEAMAYADFFKGEFET FQATFEKMLLNLESIPEVCPKFEQKDSYLAYFKALQKALMQKDTTKLLESWRDVDKAWMK ITTPLQVGHPLEYYEDHYRKAVAPEWDLRIARIYEGKDLLDLDSTNEVSKEAFMEFYSQY TAKMPQTSYKKEIDFCVQESLAKTQSYGGQPLLFYGAELNGLFSAQVVPNDESVSSQYGK KIFYFPDRVWEISCAKPFMLLSRKTFPEKFLDFNREMLYFRKKDWYKVYEISTIGHEFGH ILWVSLDSELQINKSGQFKNIEEFKATMGGLAYYFVAKNQPLLKELVFNMISRAVGLMAW KKEDEVLPYYCEGLIHLDILFSSEILEYVGNFESVALKIYEERIPQLVERYLQVYDELIK IYLNKADALEFLSKYTLKDAEGYFMPLREEVYTFVRDYYEQYNAIGQVVDHLSIAEWKEN YLKGKKIATY >gi|197325098|gb|DS990368.1| GENE 585 579911 - 580582 515 223 aa, chain + ## HITS:1 COG:RSp1405 KEGG:ns NR:ns ## COG: RSp1405 COG1352 # Protein_GI_number: 17549624 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methylase of chemotaxis methyl-accepting proteins # Organism: Ralstonia solanacearum # 10 204 80 265 292 130 40.0 2e-30 MQLKAGRFKQEFINSFTTNKTDFFREGFHFLDMVNRILPHRFKESEPIKVYCSASSTGEE PYSIAATLLYAKEIYHSKTPVSLLATDIDTSVLEFAKRGKYIVDTFLNPLPTWLELKDFF DIMPKSQREISMEAKPSLKNIINFKQHNLYAKTYPFGKNEFDIIFCRNVLIYFKVSDQEE ILQKLFNCLKVGGTLYLGHSESILGLAPKVDRLGQNTFIKIKD >gi|197325098|gb|DS990368.1| GENE 586 580584 - 581237 865 217 aa, chain + ## HITS:1 COG:YPO1679 KEGG:ns NR:ns ## COG: YPO1679 COG2201 # Protein_GI_number: 16121941 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain # Organism: Yersinia pestis # 13 215 146 348 349 199 50.0 4e-51 MVNRNEKYHPDLILKSNPYKSEGKKLIAIGASTGGVEAIAKIVQMLPSNLPPIVITQHIP EGFSTSFANRLNRLASLEVFEANEKMLLQNSCAYLAPGGKHLLLDKIGNDYFVKSIDGER ISRHKPSVDVMFRSVNNVVGKNALAIIMTGMGDDGSIGIKELYDNGAYTIAQDESSCVVF GMPKQAIARGAVCEVVGLDEIPEKIIQFSQGNLKRGK >gi|197325098|gb|DS990368.1| GENE 587 581237 - 581824 494 195 aa, chain + ## HITS:1 COG:Cj0429c KEGG:ns NR:ns ## COG: Cj0429c COG1739 # Protein_GI_number: 15791796 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Campylobacter jejuni # 8 121 6 119 194 134 58.0 2e-31 MELYYPTEVAQSTFEVKGSQFLSFLIPIEHYESFLKEAKAKHTKAVHFVTASRFFNAQSQ IVESFSDDGEPKGTSGMPTLKVLRGYDLIECALLSVRYFGGTLLGTGGLVRAYTQGAKGA ILQAQMQNILKAYIPQSKETLFVAFSLLAQVEYLAKKMEVKILKKEFLDKGVKLEIQAYK DYLSAFVLKVESLSF >gi|197325098|gb|DS990368.1| GENE 588 581824 - 582555 627 243 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418227|ref|ZP_03656233.1| ## NR: gi|224418227|ref|ZP_03656233.1| hypothetical protein HcanM9_03010 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0903 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0903 [Helicobacter canadensis MIT 98-5491] # 1 243 1 243 243 463 100.0 1e-129 MLVRCILILFCSVMLFGVEETKISNYLQKEIHPQNPFNSYKKIGDMFGVPLPVIEEKTPK YYKQPFYKEKEEVKSLVDENAKWDTYSLSHKFFNSALKATSPIFSQQLNSLVGVYIPKVE FKVNLNSYVSRDDQNIGGDLNLNLPILEYKKSSLLLMGGFTRDPQTLDWSEKYGIKHQIK GVLLQNLVLMQSVMQNNEVMNEQTWNYGVEYSPFKSIKLYLQRENNKIQEDNTKAGIQYK FLF >gi|197325098|gb|DS990368.1| GENE 589 583097 - 583903 1060 268 aa, chain + ## HITS:1 COG:jhp0367 KEGG:ns NR:ns ## COG: jhp0367 COG0413 # Protein_GI_number: 15611435 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate hydroxymethyltransferase # Organism: Helicobacter pylori J99 # 1 268 1 269 270 319 59.0 3e-87 MSIQSTIKQTTITQILEKKNKEKITMITAYDALFAGIFDSEVDMILVGDSLHMSFFGAKD TLGISLDAMIYHTKAVCNGAKESLVVCDMPFGSVATPEIALQGAIRVYKETNAQAVKIEG GAEMYETIKKLVENGIAVVGHIGLKPQLVRSEGGYKVKGKNEKEAQGLLCDAIKLQEAGA FCLVLEGVRSEVGQVIAQNLKIPVIGIGSGVNVDGQVLVWSDMLGFFEAFKPKFVRQYLE GARLVREAVQQYVRDVKSGDFPKMNESY >gi|197325098|gb|DS990368.1| GENE 590 583940 - 584914 1259 324 aa, chain + ## HITS:1 COG:Cj1362 KEGG:ns NR:ns ## COG: Cj1362 COG2255 # Protein_GI_number: 15792685 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Campylobacter jejuni # 8 324 17 333 335 447 71.0 1e-125 MELEGDEEVKLRPSDWDDYIGQEKLKRNLKVFIEAAKKRGDVLDHLLLFGPPGLGKTTLA HIISGEMNAPIKVTAAPMIEKAGDLAAILTNLSEGEILFIDEIHRLSPAIEEILYPAMED FRLDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMISNPLRDRFGMQFRMQFYEKEELARI VQIASIKLQKECSNEGALEIAKRSRGTPRIALRLLKRVRDFAEVAEEEIITKERTQYALN ELGVNEYGFDELDLRFLKIICESRGRPIGLSTLAAAMSEDEGTVEDVIEPYLLVNGFLER TARGRIATQKTYELFSFRNVGSLF >gi|197325098|gb|DS990368.1| GENE 591 584990 - 587614 3615 874 aa, chain - ## HITS:1 COG:jhp0280 KEGG:ns NR:ns ## COG: jhp0280 COG1344 # Protein_GI_number: 15611350 # Func_class: N Cell motility # Function: Flagellin and related hook-associated proteins # Organism: Helicobacter pylori J99 # 1 874 1 828 828 545 40.0 1e-154 MRIGTNSSYTMLQYYQGRTQNGLNGILAQMNGLKIQYGYQDSSIFNKTLELDYNLTTLTQ SKELANNALTFTRHTDTALSELVKNMDNFKSKLVQGANDIHSETSRLAIAQDLQSLRDHF LSIANTSIGGEFIFAGTATTSKPFNSDGSYNGNNATLNALLSSSNSVTYNITGYELFFGS DNDTNRIISTNVPKFNQSALNPQIMDPNHPTGNSEEVYITAEDTLRDLVGDNDSDPSNNG PEVFYITGRRPDGTAFKSKFSMEVAYNDKDQAVKVQDLLDRIGKEFGNTETSKVVEVSLN KWGEIEIKDLTGGRSNIEFYMVSSSYQDPANPDGVGTADIDTLLNSGVKVNTYVQSPYLG SFSNSQITSVEDYNDHRLHTIPTTFRNHNNEIAKTSTLLTDIFPDGVTQLDLSGISANDA DKNPTNNNLNSTFTITPTSTVQDLMDSIKTMYNNQQGANVEVQFSNGKITIIDNNVSQKT PPDQSQNNLPYTGESSLSLTITAQDNAGNNVNGFRNDYSVEYDRVGFSKEGSTLSSNVSQ IVRDTNEYATMSTKLSEVSGVGLDGHIYNFEVKDVNGTPISGRIEFSDTGTNMIIETPAT INGVNIANIPIPILNPNGNPPQVAGDATPADEVTYQQLADTLGIVMNLSNSSQADLQNIF VQGGADFNNPDVKLSYETLISNAKNNVSISLDSSGQMQLKDLNNSPTRMEFMLYDNQSSN FALDANGRVNTTGHPALTFQANNAIIADDPHVDFFKQIDTIIQALEDGTYRPGGSNEYDD SMRNPGIQNALLVFDHLADHVNKAHTKNGAQGNSFEYSIERTESLIVQVKTLRSETIDTD FAEAYLQFSTLSLNYQAMLSSIGKISQLSLVNYI >gi|197325098|gb|DS990368.1| GENE 592 587804 - 589555 2019 583 aa, chain + ## HITS:1 COG:Cj0640c KEGG:ns NR:ns ## COG: Cj0640c COG0173 # Protein_GI_number: 15792000 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Campylobacter jejuni # 1 583 1 583 583 830 67.0 0 MRSHYCTGLDEKDIGKEVTLCGWCNTYRDHGGIIFIDLRDRSGIVQLVFDPKDSQQAHKI ASEVRDEYVLVAKGKVRKRGEGLENPKLKTGKIEVLIDELNIENKSLTPPIAVGDESVGE DVRLKYRYLDLRNPRLQEIFITRSKVAQAVRNSLSHLGFLEIETPILTKATPEGARDYLV PSRVHHGEFYALPQSPQLFKQLLMVSGFDKYFQIAKCFRDEDLRLDRQPEFTQIDIEMSF CEQKDVIGVAEEVLKSIFAACGISIQMPFPHYTYNEVMEKYGSDKPDLRYELPLVEVGDL FIDSTNEIFATIAKDSKKNRFKALCVKGGDNFFSRKTLGEAEEFVRKFGAKGLAYLQIKE EGIKGPLVKFIKEENLKTLLDRVGASVGDIIFFGAGAKKVVWDYMGRLRQKVASDMGMID ESVYQFLWVVDFPMFERNDDGSISALHHPFTMPKNLEVQDIEEINSVAYDVVLNGFEIGG GSIRIHKQEIQSKVFELLGISQKEAQDKFSFLLEALQFGAPPHGGIAFGLDRIIMLLCKA HSIRDVIAFPKTQKATCPLTEAPSPANEEQLRELHIKVRETKK >gi|197325098|gb|DS990368.1| GENE 593 589565 - 590137 746 190 aa, chain + ## HITS:1 COG:Cj0639c KEGG:ns NR:ns ## COG: Cj0639c COG0563 # Protein_GI_number: 15791999 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Campylobacter jejuni # 1 187 1 187 192 231 65.0 5e-61 MKKLFLVIGAPGSGKTTDAEIISKNNSDSMVHYSTGELLRAEIASGSELGKLIDSFTSKG NLVPLDIVVKTIVDAISNAPKDIVIIDGYPRSVEQMQELDKILAQKQEIILESVIEVEVS EKVACDRVLGRARGADDSVEVFHNRMKVYLEPLAEIQKFYTSKGILHKINGERTIEEIVS EMENFIKSKN >gi|197325098|gb|DS990368.1| GENE 594 590148 - 590669 698 173 aa, chain + ## HITS:1 COG:Cj0638c KEGG:ns NR:ns ## COG: Cj0638c COG0221 # Protein_GI_number: 15791998 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase # Organism: Campylobacter jejuni # 1 172 1 172 172 247 74.0 6e-66 MDLSKIEVGSNPDKLNVVIEIPYGSNIKYEIDKDSGAVVVDRVMYSAMFYPANYGFVPNT LSDDGDPADVLVINEYPLQAGSVIKARLIGVLIMEDESGMDEKLIAVPISKIDPRYDNIK SLEDLPKITLDRIKNFFETYKMLEPNKWVKVKEYRDLESAKGILDKAIANYKS >gi|197325098|gb|DS990368.1| GENE 595 590832 - 591851 361 339 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239995924|ref|ZP_04716448.1| ribosomal protein L22 [Alteromonas macleodii ATCC 27126] # 1 297 1 292 327 143 28 1e-32 MKKVILASIFATFALVGCGGSNKESAAADDSNKVYEVKFAHVVSANTPKGRAADFFAKRV NEMTNGQIVVHVFPSAQLVDDDKVFQELKRNNVQLAAPSFSKFTPFAKEFNLWDIPFIFR DTEHLHKVMDGEVGQILKDVITAKGYVALDYWDAGFKQFSTNKKPIILPSDAEGQKMRIM SSKVLEEQTKAIKAIPQVLPFGEVYSALQTGVVDAAENPLSNLYNSKFYEVQSSITMSNH GYLGYLVVASEKFWNELPKDLQEKFVAAMKEATAYEREESAKEEAMLLDKLKADDKTGTQ IFELTEDQKQQWQDVMIAIYPKFYDLVSQELIEKTINTK >gi|197325098|gb|DS990368.1| GENE 596 591881 - 592483 477 200 aa, chain + ## HITS:1 COG:no KEGG:HH1869 NR:ns ## KEGG: HH1869 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: Two-component system [PATH:hhe02020] # 2 200 5 205 205 291 73.0 9e-78 MIQKPFLYAHKSPGINRFFAVLDTIIAGINKNVAVWGMAIGIVITAVNVCMRYIAGFFPE IGSLTWAEEVARYCFLWSAFFGAAYGFRKGVHISVTMLLEKFSPSWAKACVLGTHILNSI FLGFMFYASLMVCVLNYEIGYMSEALHNVPLWVFLLCLPIAFFGATYRSIEKIYEVSWMD ADKVVRNAEEEMIHDSVIKD >gi|197325098|gb|DS990368.1| GENE 597 592493 - 593770 775 425 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020581|ref|YP_526408.1| ribosomal protein L16 [Saccharophagus degradans 2-40] # 1 424 3 430 435 303 36 1e-80 MSVAFLLIVLFGLLLLGVPVAISLGVSAVCTMILFSSYDIMGVPEIMLNGLKPALMAIPM FILAGSLMSKGSSAQRIVDFAKSIVGHLPGGLPMSAILACIIFAAVSGSSPATVVAIGSV MFVALKEAGYPKSYSVGAITSAGSLGILIPPSVVMIVYGVTAEVSIEKLFMAGVIPGLMI GGAMMLYAYIGAKRLGFKSTTPASLKERWMKFKEAFWALLIVFVVIGGIYAGIFTATEAA GISAVYAFIVSIFVYKDIKIKDLYSVFLDAAITTAMIFFIIGFAVVFAHFLTSERIPHII AENLVSMNMTWWMFLILVNLILFLMGQFMEPSSVVMIMTPLLLPIALQLGIDPIHFGIIM IVNMEIGMLTPPVGLNLFVASSLTNLSLKDVTISIIPWLCVLLLGLILTTYIPEISLWLP NLLDQ >gi|197325098|gb|DS990368.1| GENE 598 593793 - 594542 707 249 aa, chain + ## HITS:1 COG:HP0265 KEGG:ns NR:ns ## COG: HP0265 COG0785 # Protein_GI_number: 15644893 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis protein # Organism: Helicobacter pylori 26695 # 5 246 7 240 240 157 43.0 2e-38 MEEWLITFFDKAPLLISFIAGILTFVSPCVLPLIPAYLSYISEVSLSELKAYETLDFKMR LVIVRNALFFVLGMGIVFVLLGAVAARILSGGILLSPIVAYFAGGILIIFGLHTARVIQI PFLNYQKTFSIHMISFNFLRDFFTPFLLGVSFSLGWTPCVGPILAGIISLASLEANEGVM LMVIYTLGFSLPFLLCAFLVGYIFAFLEHIKKYFKWIEWCAGGLLIVIGILIMSGKMAWL SNYLVKVFA >gi|197325098|gb|DS990368.1| GENE 599 594543 - 595010 234 155 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229531703|ref|ZP_04421088.1| acetyltransferase, ribosomal protein N-acetylase [Sulfurospirillum deleyianum DSM 6946] # 4 142 5 145 162 94 42 8e-18 MVTLKNFIDLDDWQKREIWQWRNSQQVSCYMKNKVISWEEHLEFIEGLKNDSTKLYFLVF LNQEAIGVIDFVDLKRGDSCEFGLYQNPCLKGYGARLMEILMEYALKELAIKNLYACAFN ENIKAINLYLKFGFILTKKDEIMSYFKYYLGGGAK >gi|197325098|gb|DS990368.1| GENE 600 595053 - 595685 626 210 aa, chain + ## HITS:1 COG:L0362 KEGG:ns NR:ns ## COG: L0362 COG0223 # Protein_GI_number: 15673875 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Lactococcus lactis # 47 206 93 252 319 62 29.0 5e-10 MRVAILTSPNQWFIPYAEELCAKIPKSDLYFSHQEIKQAYEIVFILSYHQIIPKTFLVKN KYNLVIHASNLPKGKGWSPMFWQILEGKNEIIFSLFEADEKADNGEIYLQKTLKLNGVEL YEELRDKQAKMCQTMCLEFLEKYPNISSKKQEGNESFYPKRSPKDSELDLTKSLEEQFNL LRIVSNEEFPAFFYKEGKKFILKIYDFNEK >gi|197325098|gb|DS990368.1| GENE 601 595806 - 597446 1737 546 aa, chain + ## HITS:1 COG:Cj0027 KEGG:ns NR:ns ## COG: Cj0027 COG0504 # Protein_GI_number: 15791426 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Campylobacter jejuni # 5 546 3 543 543 747 67.0 0 MSKVETKYIFVTGGVLSSLGKGITSSSIATLLKHSGFEVGILKIDPYINVDPGTMSPLEH GEVFVTRDGAETDLDIGHYERFLNMDFSSKNNFTTGQVYLSVIDRERKGGYLGKTIQVIP HIVDEIKRRIKLAGEGKEILVVELGGTVGDIEGLPFLEAMREIKHEYGIERVISVHVTLI PLIRVAGELKTKPTQHSVQELRRIGITPQIIIARTEKELSKELKNKLSMSCDVDYDCVIM AQDAKSIYQMPLNFLKEGVLVPISRFLKLPQSTPDMKEWDSLVKRILAPQNEVSIAFVGK YLNLKESYKSLIEALVHAGANLDTKVNIQWIDSEELERNQELLKQLKYVDGILVPGGFGE RGIKGKMEAIKFARENKIPFLGICLGMQLAILEFARNVLGVKEADSMEFNPKTKEPFIYL IENFIDQNGEKQIRTHTSPMGGTMRLGEYECQTKEGSKLQKAYNGQKIIKERHRHRYEAN PKYREILEKNGLIISGESKGLIEVIELENHPWFVAVQFHPEFTSRLQAPNLVILEFIKQA SKHNAN >gi|197325098|gb|DS990368.1| GENE 602 597436 - 599016 1344 526 aa, chain + ## HITS:1 COG:Cj0028 KEGG:ns NR:ns ## COG: Cj0028 COG0608 # Protein_GI_number: 15791427 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Campylobacter jejuni # 8 516 1 513 523 365 40.0 1e-100 MPIDFQNLSLLDISLIREKLISRFSAMEILNLQNLPLPSALNNLPQIAKKIVQAIKEQKK IAVVGDYDVDGVVSCAILQDFFKRIPYSILVVIPNRFSDGYGISSALVEKIDCDMIITAD NGINAIEAAEVCKKKGIELIITDHHTPQEILPDALICNPKISPNFPESEICGACVAWYLC AAIKQEMNLKVSMVEFLDLLALAIVSDVMPLRGMNWVLLKKGLEILGQNRRVSLSLLREH FKKYPLNAQLLGYYFVPLLNCAGRIGSAELAYQFLIQNDSKAAYQILEELLELNRQRKAM QNQVFLEAKEDFMHQENFEALPFVVVYNPTWNEGVIGIVAAKLCEEFAKPSIVLTNNEGK LKGSMRSNGIDCVETLAKHKEFLENFGGHFKAAGLGLLQENFEVFKEALMNMEICSEQKI QNDVLGILPLQKINLEIFRILNEFEPYGEGNAMPKFATRAKVLSVKLFGDNNSKILLEQD GITKEALKFSENLQGYENQEIELIYSLQWDRFSSNVILKIEDYFLA >gi|197325098|gb|DS990368.1| GENE 603 599001 - 601421 2232 806 aa, chain - ## HITS:1 COG:Cj1373 KEGG:ns NR:ns ## COG: Cj1373 COG1033 # Protein_GI_number: 15792696 # Func_class: R General function prediction only # Function: Predicted exporters of the RND superfamily # Organism: Campylobacter jejuni # 6 806 5 809 823 634 46.0 0 MGLLFIFKTLLRYSKSILFVCFLVFLISLFYTLKLPIDASSESLIAENNKDFKIYEEISQ NYQSKDFLILSFSPKNNDVFNPNSLKTLENLINDIQKIPQVESTLSILNAPLLKSTPTLE LQEILKINPTLLSPQTDKNLAKKEILNHPFYTQNIISKNAKTTGILIFLKEDSKLKELLS LKKSSTPLESQKIQNLIRTYKEQIQTQNTQTIHSLKSLQAKYQTKGEIHLGGITLITNDM IEYVKSDLITYGTILSIILALMLWIFFRQIYFVFLSFAVCLFTLIVSSGIFSFLGYQITI VSSNYVSLLLIISVSLIVHLIVSYLEFYKKFPKASQKNLVFAVMLNKFSPSFFAVLTTII GFLSLIFSSILPIIHLGIIMSIGVSVALVSTFVLFGAILVLLPKPSKHRNIPKWHKNLLS HCANIAINQPKLVYGIALLCTLFSIYGIFSLRVENSFVNYFKDKSEIKQGLLLIDKELGG TIPLEIIIAFKKEESNNQSTNFEDEFEAEFSALEKEDSYWFDSQKLRIAKNIHNYLSNKE FIGSILSLHSLSILVESLGLGADDFMMAFLYKNSPQSLKDQLFTPYVNLEKNQMRFVFRT FDSNPNLKRNAFIQEIQNDLTQILQKEPVSFQVNGIMVLYNNLLQNLIASQVDTLSLVIG AIFIVFILIFRSIKLSIIALLTNLIPLGAIFGFLGISGIPLDLMGVTIAAICLGIGVDDV IHYIHRYKEELKFHPIKTAIRNSHNSIGNAMYYTTLIIVIGFCAMMSSNFIPTIYFGLLT TLVMLLMLISSLILLPTLLMTFYAKK >gi|197325098|gb|DS990368.1| GENE 604 601421 - 601996 623 191 aa, chain - ## HITS:1 COG:Cj1372 KEGG:ns NR:ns ## COG: Cj1372 COG2854 # Protein_GI_number: 15792695 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, auxiliary component # Organism: Campylobacter jejuni # 1 185 1 185 189 162 52.0 3e-40 MKLILSFLFLIISSFALEFNQIDTTMENKINKTLQILQTSNQSIDAIAQEIFNLFDSIFD YKLMAKLSLSTEYKNLTPTQQNEFNKAFEMGLKRSFTDKLHLYKDETIKVLGGEKIKNNR YNLKTSIILDGKINYITFKFRELKKDWKIYDVDILGISVIQTYRSQFADIIAQQGFETLL KKLKSENFFKN >gi|197325098|gb|DS990368.1| GENE 605 602000 - 602698 801 232 aa, chain - ## HITS:1 COG:Cj1371 KEGG:ns NR:ns ## COG: Cj1371 COG2853 # Protein_GI_number: 15792694 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Surface lipoprotein # Organism: Campylobacter jejuni # 4 231 6 232 232 191 44.0 1e-48 MYKILFLLLFALSQLTFAQDDFLNEFESEYTSTTIKDPFEKYNRFMTNVNWGIYDYIFSP ALEGYNTITPLGLRIGIYNFFDNLASPLRFLSQLLTFHFKEAGNEFARFALNSTFGLGGI LDIATSNGLYSKRSDFGITFGRWGFDGEFYFVLPLLGPSNFRDILAMPLNAFAYPTTYIN PFWASSGVYAFKEFNYTARHKDTIDTIRRDSLDSYVLIRDTYEQFRDELIKE >gi|197325098|gb|DS990368.1| GENE 606 602691 - 604568 2215 625 aa, chain - ## HITS:1 COG:jhp0328 KEGG:ns NR:ns ## COG: jhp0328 COG1154 # Protein_GI_number: 15611396 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Deoxyxylulose-5-phosphate synthase # Organism: Helicobacter pylori J99 # 12 623 6 617 618 739 58.0 0 MSLDQKYLEILKKDNFNEQDYIALNELAQILRHRILEVVSKNGGHLSSCLGSVELIIAMH CVFDSPNDPFIFDVSHQAYAHKLLTGRWDSFETLRQTNGISGFTKPQESNHDYFIAGHSS TSISLGVGIAKAFALNHSKNIPVVLIGDGAMSAGLAYEALNELGDRKYPMVIILNDNEMS IAEPIGAISKYLSQIIAGKFIQKIKSKVSNAFNKMPNATYLAKRFEESLKLITPGLLFEE LGLEYIGPLNGHNLKELIGAFKLAKNLKKPIVVHTQTLKGKGYPYAEGHLEHWHGVSPFD MQKGVTLSQSSSKTPTQIFAQTLLEYAKQDSKIVGITAAMPSGTGLDLLIKHFPKRFWDV AIAEQHATTQASSLAKEGFKPFVAIYSTFLQRAFDQLIHDVGIMKMPVKFAIDRAGIVGE DGETHQGVFDIAYLKIIPNFTLFAPRDNATLKEAITFAKDFTDGPCAFRYPRKSFLLEDD RIQSTPFIYGKLEILQNAQSGILLIGYGNGVGRAIKTAQILKESNLECGIVDLRFLKPLD EISLQNLGQKYPYWFVFSDNVKIGGVGESLCAFAQQYNLSIKIHSFEFNDAFIPHGKTQE IETIMGIDPQNIATQILNITGKEDV >gi|197325098|gb|DS990368.1| GENE 607 604568 - 605353 1146 261 aa, chain - ## HITS:1 COG:jhp0327 KEGG:ns NR:ns ## COG: jhp0327 COG1317 # Protein_GI_number: 15611395 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway protein # Organism: Helicobacter pylori J99 # 35 259 31 255 258 129 38.0 7e-30 MEVTKKPQTSDSKKDSTQKEQEIAMPPMPSTSQELPEEQIQEVQKTEEMPPQPTPSLKLF ETEVVDKILQKSDVLAQSLQKLQEQFDKQEKEINQRVTDAKAEAKEQGYNEGYQKAKQEL EAQINSQKELYSLSIKRIDEHISNAKTHITNLEKELSSIALDIAKEVITNEVNTNSAKIA TSLARNLLQNLAENTQVTLKVFPGDLEELKETLQDLNNVTIQADPAIAKGGVIILSNEGN IDGDIYMRFEALKKSILESRF >gi|197325098|gb|DS990368.1| GENE 608 605430 - 606464 1303 344 aa, chain - ## HITS:1 COG:HP0352 KEGG:ns NR:ns ## COG: HP0352 COG1536 # Protein_GI_number: 15644980 # Func_class: N Cell motility # Function: Flagellar motor switch protein # Organism: Helicobacter pylori 26695 # 6 344 5 343 343 451 72.0 1e-126 MPSITLSPRQQAQYDEFSMAEKIAILLVQLGDEITGEIFSHLDLDSITEISKYIAQNSGV DKTIAGAILEEFYAIFQSNQYISTGGFEYAKELLYRTLGPEAAKRVLDKLAKSMQSSQNF AYLSRVRPQQLSDFIIHEHPQTIALILAHMDPTNAAETLSFFSDDLRAEIAIRMANLGDI SPNVVKRVSTVLENKLESLTSYKVEVGGVRAVAEVFNRLGQKAAKATIAYIEQIDDQLAG AIKEMMFTFEDIEKLDNNAIREILKIVDKKDLILALKASPEELKQKFMSNMSQRASEQFL EEMQFLGAVKVKDVEAAQRRIVETVQSLSEQGVIQIGEQEDTIE >gi|197325098|gb|DS990368.1| GENE 609 606467 - 608197 2078 576 aa, chain - ## HITS:1 COG:HP0351 KEGG:ns NR:ns ## COG: HP0351 COG1766 # Protein_GI_number: 15644979 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway lipoprotein # Organism: Helicobacter pylori 26695 # 1 566 1 563 567 598 56.0 1e-170 MDLKALFEQIRNLYKRLNKKQKIVILATIVAIVAFISGLIVWNSMNNKAGVMYPGYAVLF EGVSPEDGALIIQQLQQDKIPYQIPKDNTILIPQELVYEQRMKLASNGIPKSSKVGFEIF DTQDFGATDFDQRVKYLRAIEGELARTIESLSPIQKATVHIAQPEKSVFVSEQTPPTASV VLAFKPGQTLTPKQISGIKNIVSSAIPNLTIENVEVVNEKGEPLSELDELGGARELAAAQ LRYKNNFEQSLEEKIINILAPIAGGREGVVAKVTAEFDFAQKESTQEYYDPNNVVRSEQN LEEKREGSKPKEIGGVPGVVSNIGPVQGLEDENNRERYEKSQTTTNYEVSKTISNIKGEF ATIRRLSAAVVVDGKYQKQIDENGIEQLQYTALNESEMQQISALVRQAIGFNEQRGDEVS VSNFQLNGQDSGFKARTPLERFLETAQNLLTPFMPLLKYVIVGIILFLFYKKVILPFSER MLEAKADEEEEIESLLKVDDEEEENGDKLNEVRRRIEDQLGFGNGNNEDEVKYEVLLEKI REVAQEKPTELANLFQTLVHDELGIDSIGSASKGGR >gi|197325098|gb|DS990368.1| GENE 610 608205 - 609305 1230 366 aa, chain - ## HITS:1 COG:Cj0317 KEGG:ns NR:ns ## COG: Cj0317 COG0079 # Protein_GI_number: 15791685 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Campylobacter jejuni # 1 364 1 363 364 395 55.0 1e-110 MTFNSTLNLIQTYEAGKPIELVVREFGIDPKEIIKLASNENPLGASPKAIESIVKNATNA HLYPDDSMFALKEGLSKHYQVNPKEIIIGAGSDQIIEFCIHAKANENSKVLMAKTTFAMY EIYSKMVGATIIKAQSQFHNLEEFLELYQTHKPSIIFLCVPNNPLGECLGKKEIFDFLGK IDSETLVIIDGAYQEYAKAKDTSKAIDPKELIQSFPNAIYLGTFSKAYGLGGMRVGYGIA KEDIIQALLKVRPPFNITTPSLAAAIEALKDQEHIHQTTQNNLEQMKLYEDYANSKGISY IPSYGNFITYLFENPLNSTLIADYLLKKGMIIRNLASYGLNAIRITIGTKSQNQRFFTLF DEFLGQ >gi|197325098|gb|DS990368.1| GENE 611 609382 - 610809 1511 475 aa, chain - ## HITS:1 COG:no KEGG:WS1918 NR:ns ## KEGG: WS1918 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 475 1 480 480 301 37.0 3e-80 MTGYLVAINAKTKRGAIEQANNKRRYEFDLHIWQGQLNELTPNREVEFEVSDSREVIFVK PKVIKENFEIHQTKSIKDCIYDYYGGVENIIKRYQKDIESKKELDFLRIKRFLFTAYNDL FELDSTIPNLALTNLKSELTALDKAYEAFLKKASYPPMHSYEKVFLAKQIEYVKIEELIQ TTQSIIKSTSAQQASMGETLKRLEEQFAKRNDQNSTNYIQAQSYLKNFRKKYVDLLHYLS LQKEKLAKITKVKEDFYDKFYEPFLKSYLPLIKAFKEDFIKLLNTKAFDLDFLLWQRARG SLSVRRFFIEAGITGTYSSKTFLKYFLRSLDKTKIRRETQSLFDLLKYLEAFSKKNILLI QNSKEDSKRYREYLKKFDNDLQITTSNKPQNNLDSTLQHHYDVIVMEWEVNGINILDFIQ KYYQTFKTKEKINFCAIVPKNFDKSLIQEAKRLGITYFIIKGDMEQFIDMMRMIL >gi|197325098|gb|DS990368.1| GENE 612 610910 - 612169 1300 419 aa, chain - ## HITS:1 COG:aq_699 KEGG:ns NR:ns ## COG: aq_699 COG1538 # Protein_GI_number: 15606101 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Aquifex aeolicus # 7 391 6 407 437 85 23.0 2e-16 MSLKTLLFLCILTSFGYTLSLQEAIDLTLKANHAIKEQEFLLKEAQYNYKTYQSPFYPSI NATYSTDRTNKISSQRSRKTSGNIGANIQFNLFNGLSDYYNLASYESLSKAQEHQLQATK EDIILLVKTAYIDVLRQKQNVIVAEQSKALLEEQRRESAEFYKVGLIPKNDLLKVEVELN NSIQALLSAKSNLAYSLKNLERYTRTKINLKDLVELTLHQPTLIESTLKNLMYQKRSELL FLDSVIQSKDYLVKSAKGNFLPNINIIGDYTRYGEDYRLSKRSNTYNDETMITLQINLNL FNGFNDKYTLESTKVNKLAFESQRITLLEDLDLQLFSALETYNLSLNAYQVALSALTQAE ENYRISKNRYKERIQSTSDFLDAEYLLTQARTNVVLNRYAILQALAEIERITQTPQVLN >gi|197325098|gb|DS990368.1| GENE 613 612159 - 615278 3995 1039 aa, chain - ## HITS:1 COG:SMc01457 KEGG:ns NR:ns ## COG: SMc01457 COG0841 # Protein_GI_number: 15965893 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Sinorhizobium meliloti # 6 1024 25 1012 1044 347 26.0 6e-95 MIEKIINRPVVVIVGMILVTLFGILSLKTMPYQLTPKVTRPVISISTTWDGATPYEIERE IIERQEQVLKGIDNLVSLESRSRNARAHITLEFNIGTNLTEALLDVSNKLDEVKGYPDNI DRPIIRATGDDTSPVVRMALVSETKNVREYRTFFNEKVIQYFERIDGVAEVNFPGGDDRQ MHIILDYQKLAAYDLTIDTLINALERENINISAGTMNYGRKAYRIRTAAEYKTPEMIAET IIWSDGVKRVKIGDVAKVQEGFESKIAASFYNGQESLNVFIKPTADANTLELTNQVKEVF EELNEGILKKEGLKLEWVSDQRNYITQAIDLVKGNILAGAFLACGILFIFLRSITSTLII AISMPLSVFGTFIIMAALNRTLNVVSLAGISFAVGMLVDSAIVVLENIDRHRKMGKSPIQ AVSDGTTEVIGGLIASVLTTVAIFIPIINVQEEAGQLFRDIAIASSSAVGLSLFVSVLVI PTLSYQVNKRTISLTPPKFLLLLTQKFVELGNYCVKWIMFFVYKSMQNTKNKILTILSLT FISIAFTYFLFPKMEYLPQGNQNFIFAKLNPPPGLSYEERVKTGETLYLCVKDYYASNGY QGSATLPPIANMYYFANETDMQFGMRSTEETRASELIPLAKTCMAQIPGITGNASQQGIF ERRGGQGRSIDVDISGTDLDKIIITALELQRITLETLGKETQISPRPSLEILYPEINLYP NNERLKAVGLDAQSFGITIDVLMDGRKISEYKEEGREKIDLILKTQQSQITSPEELYNAS IYTPDGGILPISSLAIQKLEYGINEIRHLERDRTITLQINPPKNITIQETMEIIQGEVLE KLKNSGALNDNKITLSGTADQLTKIRTALEGGFILAVFITYLLMAALYEDFIYPLIILFT IPLALGGGILGLWLTNQFIADQPLDVLTMLGFIILVGTVVNNAILIVYQSLHNIRLYGMD YQEAILNAVQVRIRPIYMSTLTSLFGMLPLVIAPGAGSEIYRGLGAVILGGLGLSTFLTI FLIPCLLSFFIKKEVKNVA >gi|197325098|gb|DS990368.1| GENE 614 615288 - 616316 1154 342 aa, chain - ## HITS:1 COG:aq_1331 KEGG:ns NR:ns ## COG: aq_1331 COG0845 # Protein_GI_number: 15606534 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Aquifex aeolicus # 36 326 48 334 348 104 26.0 3e-22 MSRILLLLLFPLLLFAQTLVTSQPIQSGFLSQNHIYVGSLYFSERALLASEVSGVIEELF VREGQKITAGQPLAKLNSDLLTKEIKAKESLLKQSTALLKKSKKDFERYKSLYESDSIAY KEYEDALFNLQAQEGNTESIAADLEYLKTQKDKKILKAPYDGVILQRLLKQGEWVSAGAS IFNIAKLSPLEANIEVPFSILRSLKIGDLVQVNIANKNYSAKIIALIPLGDAKARTFPIK LSIDDKKGELIEGLEVKANLNITKSQESLLVPRDSILPTQNGDCIFIIKDNKAKQVFIKV NGYEGLNASITPINATLSTQDKVITQGFERLRDNQPIKEANS >gi|197325098|gb|DS990368.1| GENE 615 616429 - 618420 1437 663 aa, chain + ## HITS:1 COG:Cj1126c KEGG:ns NR:ns ## COG: Cj1126c COG1287 # Protein_GI_number: 15792451 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for N-linked glycosylation # Organism: Campylobacter jejuni # 5 662 15 712 713 235 29.0 3e-61 MKKWFWWAVLAYIVSLLLRFYYPLLIGDLDYYFKGWLLNTNDGYFYAQGARDLLSGVKST LHSPINEMLSQITAFLAWILPLSLEQIIFYMSGFFGCVIVFLVVYLARDFGGVISFLCGV LSGIGVSYYNRTMFGYYDTDMLVVVLGLLVGVVIFDMLEKTSKIQGICLLVCSGVALVYY PSLRYVLIGYSGVLVLLGFFGSRARVVNGILLCVLLGVSLLPQYLVLWIIVCVALVLLFN DSLFKFFGRIYYALLVAFGVVLVIKILPEIFGSVYVVGNVSNVDFHYLDVMESIAEVSSL GFLEFVYRISGNLAWFILGSLGILLLFIRDKRFLIFLPFLVIGFFGYFKGLRFTFYAVPI YALGVGYLLFVVLEIFKPKKALAYGLIGVYCVASLFPHLVHIKSYLPLPILEKQEAESLS EIPAKSGDYALAWWDYGYWIGYFAKLNVFIDGGKHSGRDNFPISFILSSTNQRQSYNMAK LLLNNLSFEEFAKARNLSFQEALEVLKTDLDFAPKNQDLYFILPYRMLSIFSAIVRFSNR DLESGEAFLDKVLMLSQKKIGDRIFFDSRVYVDKNKGKIGILGEEFAMDIAEILVLKDSA RGVKFNSQSPVVLLDLGNEAYVLCDKAYLDSFYFRGMFFDNLDENLFQKVAKNEKIAIYK LKQ >gi|197325098|gb|DS990368.1| GENE 616 618431 - 618904 653 157 aa, chain + ## HITS:1 COG:Cj0252 KEGG:ns NR:ns ## COG: Cj0252 COG0315 # Protein_GI_number: 15791623 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Campylobacter jejuni # 1 156 1 156 157 171 62.0 4e-43 MEFTHLDEKRNPKMVDVSSKDLTNRVAVARGKITMSREAFLAVINESGKKGAVIQTAITA AIMGAKKTSELIPMCHMIFLSSVKCEIKEIESENAFVLEVRAKSYGQTGVEMEALMGVNI GLLTIYDMVKAIDKAMVISEVYLLEKEGGKSGHFVRE >gi|197325098|gb|DS990368.1| GENE 617 618996 - 620138 1648 380 aa, chain + ## HITS:1 COG:HP0082 KEGG:ns NR:ns ## COG: HP0082 COG0840 # Protein_GI_number: 15644712 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Helicobacter pylori 26695 # 88 323 423 657 673 112 33.0 2e-24 MFKSLYFRMRIIHILGIIVLAVNALFFTENLIGQIVQFVIVVALIIHDIDEKTWGVNMTK IIAKELKSITLASKIKVNTSYSTENGKILSLIDDFKARIQGVVETIYQKVETGQTDINGL GRIADSLKSLTQDMNVIVESTSTKADSTNILLQNFNEEILQTKSEQESMFASMQEIRKLL KDVYDLVENIFNQNANLISHFESLETNTNAIISIVEAVRSIADQTNLLALNAAIEAARAG EHGRGFAVVADEVRKLAENTQHSLAEIDSNVKAITQDVTESKEVIIENRENVENLLSRTN DANTKIGTFESIFNESFETTKKLINHSGVMSKDLTIINEDMKKILDFAKHNLTTSQNVHG ISLSIQDSFGELKKSVENLS >gi|197325098|gb|DS990368.1| GENE 618 620310 - 620783 748 157 aa, chain + ## HITS:1 COG:AGc2067 KEGG:ns NR:ns ## COG: AGc2067 COG3193 # Protein_GI_number: 15888456 # Func_class: R General function prediction only # Function: Uncharacterized protein, possibly involved in utilization of glycolate and propanediol # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 27 152 32 154 160 64 35.0 6e-11 MLKKLLFIVCSCVSQMSGAAFVQVPVLSNEAVQGILQKASAFAVQHNHAVSITIVDRSGQ VLAVFRDYNAGVHTLRSSYKKAYTANSQKKETADIAKGIREGKIPEDLKFLDENFSFLDG GIPIVIDGVVVGGIGVGGAHGSEDVAVAKAGLEFLSK >gi|197325098|gb|DS990368.1| GENE 619 620959 - 622728 595 589 aa, chain - ## HITS:1 COG:HP0051 KEGG:ns NR:ns ## COG: HP0051 COG0270 # Protein_GI_number: 15644682 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Helicobacter pylori 26695 # 2 351 3 355 355 441 61.0 1e-123 MYRILDLFCGAGGFSYGLEQNKNFKTVIGLDFEKAAIDTFNHNFKQAIGICGDITNKEVK DKVVNLAKELKVNMVIGGPPCQGFSLKGKNLGLADERNFLFLEYLELVEKVNPEIFIIEN VKNLYNAVNGYFREEIIKKIKNMGYVVNCKILNAKHYGVPQNRERVFFIAHKERLLSFPK ESNCLVSVKDAISDLNYLESGEGTIQAEYKIEPQSDYQKIMRADRLQYHIASNHSKAAIN KLKMIAPECGKECLPTHLHGKQKFSTTWGRLVWDDVSPTIDTRFDTPSNGKNSHPVLHRA ITPREAARIQSFDDNFYFKGTKTQVCKQIGNAVPPLLAKALADNIINQINQDQHTGKNFT IYNSDSYSMIETFIKQGLKVNHIITDPPYNISQDNNFSTMNSAKRQGIDFGEWDKKFDLF NWIKSYSKILDINGSFIIFCSYRFVSHICDTLENSDCVVKDILIWQKSNPMPRNISRRYV QDMEFAVWAVKKGAKWVFNKPNNKKYLRAMYTAPVVRGFERTEHPTQKSLKVMQEIIQIH TNKDDLVLDPFMGSGSTGVAAICNGRNFLGIELSKKYYNIALKRLSSNY >gi|197325098|gb|DS990368.1| GENE 620 622828 - 624060 857 410 aa, chain + ## HITS:1 COG:no KEGG:HPP12_0046 NR:ns ## KEGG: HPP12_0046 # Name: not_defined # Def: restriction endonuclease # Organism: H.pylori_P12 # Pathway: not_defined # 17 410 12 407 407 280 41.0 1e-73 MEYLKVSDFLASEAEMPFLLGAFYGRYCFTDDGSLIYTLSVYRKSSYMSDEAFYEESKID YLKQLNFQSEISQWHINNNEKIKRAEFVFVLENDLRLSQSQFFARLYTKILLSDFVGNNN FLEERKKFARAFFELRGSIDTKRPLLAKDYFYNSILELKRISLFLDNLGLSINVLNINFR DLQSQYVSGENRRNTQLRINLYWYLEKIGLMNIYKAEIVKRAYGIDYEYTGNGYYSFECR APTFNKNSFQERINFYATRILNNDLTERDIKNLREELNFDENTNNDFKRNINIAQLVRYQ TKDECAACKNKYNIADRSFLLRKFPERYYTEIHHFVSVGKEKELDVVENLTKLCPACHRA LGRGKASEQYQKKLIENIMDANEYNLEFASLIFESDDKDYLIQKVYENLK >gi|197325098|gb|DS990368.1| GENE 621 624083 - 624685 316 200 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418260|ref|ZP_03656266.1| ## NR: gi|224418260|ref|ZP_03656266.1| hypothetical protein HcanM9_03175 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0936 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0936 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 200 1 200 200 374 100.0 1e-102 MGDYKANNTQYSEELAIKILGKLHIKAALNNSDDITKVDLLAGDKNIKIDVQYSQNFSKY GDLRVDFVSAYSDGCKGSFFHNNILFQEFEKQHGFKVDKVGKWFQDDYLDAAIILFYNHE LKRNCMPDRILIIRQDVLLESLCNKVSAAKLNHKKELGDKHGSAFIPINVEQLVQNYLCY YGSISDLTNKKDDIKKYLNY >gi|197325098|gb|DS990368.1| GENE 622 624694 - 624858 203 54 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418261|ref|ZP_03656267.1| ## NR: gi|224418261|ref|ZP_03656267.1| hypothetical protein HcanM9_03180 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0937 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0937 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 54 1 54 54 76 100.0 5e-13 MQEISYMLDSTNKATDTKELESHIDSLVYKLYHLTDDEIKIIEGKQIALIQILD >gi|197325098|gb|DS990368.1| GENE 623 624872 - 626680 483 602 aa, chain - ## HITS:1 COG:no KEGG:Cj0033 NR:ns ## KEGG: Cj0033 # Name: not_defined # Def: putative integral membrane protein # Organism: C.jejuni # Pathway: not_defined # 1 602 1 593 593 328 42.0 7e-88 MKHLTKEQEQEIWDKVSKEVENFDTFLDKSQCIDEICRKIKSISEGMVQLSWTTLDETLK RTKEITYECIGTKEIQDVFGKDFSIQYSSDTFCIMPKPKIQPYNENQQDSKDLQEQDIKN ISCFKLPILLEKYPLLFMNCVFHCEFLNTDFTKDLKKLCFMQCEFKEKITLNFKECLDVF LMSYCTFEKPLTIHGKFKENADFNNSTFKDSADFSKCEFEKTACFYGVKFDKAFNFSQAQ FKGSLNAVNANLNFGFESLKEKIKQEHTEYNKRESIKKPLAHFANDFRDSFRIFKSTLIK DNNLLDASEFHKCELYCKELELKESRHKRGINANNNEDARKNIKPFKELIDFLLLRFYRN LCDHHTDFLKCFNNLVLLVALYAVLLWIGNFDLMQGKEPIISDILHQLGDKAITLKKDIK KYDWLVFLIFLALAVSCLYYLYKTIYLERKLYIKNIKLILSFTKNSLKNICFFMLISVAI IFFYAAIIATLITLLNLNDMHYWQSYLNFINFVLFFVIYFSLISLDCVFVRFLLVIAAYI ITSISIGKNIAILNPLIGKLLNTSIEIKDPIFQSITIAYTISTLLVLFSLQKTARKNSIV PN >gi|197325098|gb|DS990368.1| GENE 624 626715 - 628376 693 553 aa, chain - ## HITS:1 COG:no KEGG:Cla_0838 NR:ns ## KEGG: Cla_0838 # Name: not_defined # Def: KAP family # Organism: C.lari # Pathway: not_defined # 102 243 75 242 607 75 39.0 6e-12 MEYKEQIKNFLEDKENYSLLISGSWGVGKTYLWKEIENELNPKITHKENLWKKFKSNINF FNHLMILISIIEQYVGIILMGIIKYFNLCNYIENLNKIENSNKQEKNIIYVSLFGKEHYK EVLEEITLKAYKHNRFLYFIRNITFWKLSVGTFLQLFITKNFENIIVCLDDLERKSDKLD MKDILGLINQLKEEKCKVILISNKDELSNNKEIFDIYKEKCIDLNIHIRSKAEVILQILK EKIPEIPKEIIPDSMYRIKNLRNLNKTIKTLKFFNKELRFADRLKQNKEYKAFFIEISNK IISNYENKDSHNLNKEKQEFIPLESAFSKTIDNIIKDYIGNGLVYSIPNDKKEEFKKELK EYKFYKDSFALEGLLQNSIRYPNSIDKNKFEDFFNSVDEERLRDFINKLGYINFIALDRV FHFDKNERNLKMKKYCLELAKKLECSEKFINIICDNDEVLKQYYKDLNKETEIKSNNYFE TTRETNKYKHIKKYNDFLANLKKINESSEEKIRDFLDNKMILSYCDIYFSFEETNKNKYP QLYNVYKSINSTI >gi|197325098|gb|DS990368.1| GENE 625 628376 - 632284 1890 1302 aa, chain - ## HITS:1 COG:Cj0031 KEGG:ns NR:ns ## COG: Cj0031 COG1002 # Protein_GI_number: 15791430 # Func_class: V Defense mechanisms # Function: Type II restriction enzyme, methylase subunits # Organism: Campylobacter jejuni # 5 942 3 855 867 696 49.0 0 MSFRFNALSYKDFLNPFYAKAPILDNTYQNFLQSLESYRQNLLNNQHQNEDALVANALKP FLESLGFTTQVKAKQKGKSEIDLAITQNNTIEVIFEVKKPNSNDFFTPNNPNCKALHECI LYYLRERKNTNSSLKFIIITNCYHFYIFSAKDFEKLFHKNKEFQKLFENFQNPNSLFKGN TDEFYKEAKSLLDSPQYAQSLQTSFNSSLDSNEVSLNGLFWDLTPLLAPQSTESKESKKS TESQVSKDNPAFLTSFKIFNKDFLLDCFNPNDANDLNKKFYDELLYILGLTQSTQNGKAI IQESKESKESKESKASEGTLFYAIKSKLTNKDFEDIIQYIILWLNRILFLKLIESNLVRF NNDTTLKFLNYEKIDSFDKLNELFFEILAKDYTQRNKKSPFAYLPYLNSSLFQKQPIEST LQISQLNNDLTLKYYKNTQIKDTNYKPKHGEVKLLEYLFTFLNSFDFGHITTDEEHSITH KDLINYSVLGSVFERLNGYKEGSYYTPAYITYYMCKQSLEKVVLDKFNAFLDSNEKSLES LSNLLFIKIKQNLSQKDEIIKQAREILLSIKICDPAVGSGYFLATALNVMLEIFSKLNLL GNIMLEIQNDEIFVRNSRFEIIEYKRPTTEQDPNHKIQKELFTLKKQIIESCLFGVDINP NSCEIARLRLWIELLKHSYYTLDSSLDKNIHALQTLPNIDINIKCGNSLVSYFEVNENNS QGKPRENTLKWLMAQDTGFANNFKEQIKIYKESVNAYKEALKDKKELINTIDKIKELFKN TLLTTMKDYKNLKKNLGEFVSIYGDSAFDMETPFGMEMLRITRKQKFRFQPDLEHLEPKK LDPKGQKLLESIHNDFESLERIRTSQSFEWRFAFPEVLDNNGDFLGFDLVIGNPPYISAP SQLENTNLALQRQTISNLKKYKSLYQKWDLYIPFIELGISKLCKENAICAMIIPYPFTNQ LYAKVLRDMITTSFNLYELADLQGIKVFDSAVVTNCIIFVSKQKFKNKITISNANENLKI QATLEKTYDELIQDQKTLVFNTTAQNIITNKHQNLNTLGDFCYISKGMVLNADEKTAKGE FKKDDLISNVKDKIHCKEYIEAKDMEKYAIKRIRYLEYNTPRSPSKLSRPTFPQLYENEK IFCNRLGNLQCSYSNKKILHNDSIICCVLWKDLKGVENSSISGSVKKFSRFSRKEMEELS LNMNLKYILGILNSKYGDTLLSNLRGDDYHIYPEHIRNIPIPKIDSTNKALSDEIISLVK QILDSKAKDPTTDTKELESHIDSLVYKLYHLTDDEIKIIEGK >gi|197325098|gb|DS990368.1| GENE 626 632385 - 632750 558 121 aa, chain - ## HITS:1 COG:HP1025 KEGG:ns NR:ns ## COG: HP1025 COG0789 # Protein_GI_number: 15645639 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Helicobacter pylori 26695 # 1 121 1 123 123 152 70.0 1e-37 MYSYDEPVYLISVVAKILSIHPQTLRQYEREGLIEPGRTDGKMRLYSQRDIDKIKTILRL TRDLGVNLAGVDIILRLKDKLDEQDREIEELQIHLEKLKSNQPSKSVTKKQSSYEIIIFK E >gi|197325098|gb|DS990368.1| GENE 627 632760 - 633641 1172 293 aa, chain - ## HITS:1 COG:HP1024 KEGG:ns NR:ns ## COG: HP1024 COG2214 # Protein_GI_number: 15645638 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone # Organism: Helicobacter pylori 26695 # 1 293 1 288 288 305 57.0 6e-83 MSKSLYETLEVSSNATSEEIKKAYRRLARKYHPDINKEKDAEEKFKEINAAYEILSDEKK RKQYDQFGDSMFGGQNFHDFARGQGNVDLDDILSQIFGGGGFSQGTGNFGGFGGFSNFGG FGGFNQKSQPNLDINAQITIPFSTAILGGKHSVSLQNQNFDIKIPAGIKNGETIRLKGKG NTMGNQSGDVLLKVSVAPHPQYTQEGDNLTKKFDLPLKTALFGGKVEVETLYKPITLKVP KNTKNNQRFRVKELGAYNRKSKSYGDLYLEANIILPDIDSLPKELVESLEKYL >gi|197325098|gb|DS990368.1| GENE 628 633775 - 635040 1012 421 aa, chain + ## HITS:1 COG:HP1553 KEGG:ns NR:ns ## COG: HP1553 COG1074 # Protein_GI_number: 15646160 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Helicobacter pylori 26695 # 6 414 8 424 945 229 39.0 8e-60 MENALLCLNASAGSGKTYRLVLRYLELLFLGAKPSEILTLTFTKKAAKEMEERIVKSIQE IYQRKNDREYIKKLEFISINDLEGIEQKITKIYYEFLREDLKITTIDSFFQRILKSFCWY VGVENNFEIQNEDFEIITEIFLELLSDEAFERIVVFCVQGRKNINSVLSLCFFLDSFKEM LDKELFVYEAPKGDKEQVMEYAYRLQREYKKSKGESKSKTSNPMDFSDFNSLLHKGKTWL TKEKITDFKGFGKIPFDERDFEGLKEALLEVYLDDESQYLKNLYEIFQVYLQAKEKYYQQ SNTLSFNAVTSKVYELLLKKNFDKEFLYFRLDSTISHILIDEFQDTSILQYEILKPMIDE IKSGKGVKEFLRSFFYVGDIKQSIYRFRGGNPNLFKIAADGMKQESLQKNYRSAKNLVES S >gi|197325098|gb|DS990368.1| GENE 629 635455 - 636822 1103 455 aa, chain + ## HITS:1 COG:Cj1481c KEGG:ns NR:ns ## COG: Cj1481c COG1074 # Protein_GI_number: 15792796 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Campylobacter jejuni # 8 452 484 921 921 114 28.0 5e-25 MELGAKEEEIAILLFDNDWVVELAEFLETDGFKVVMDTSAKLVFHNEVRALIEFLKYLDS KNPQFCEEFFMLLGLEKESLDRYFEILENPPAVILLQVMQFFKISSLSAKKFLEYALGFA SVGELLEKVESLQADIVSSECSGIRLMTIHKSKGLEFNHVLVIDDNKARSRYNNVFFEFK ENGVEIQRVFQKSNDLRKSLDKTYQKAILKEEILKEKDLKNQLYVALTRAKNTMHIMLLS EKGRFDSLGLESLQRGDLKSALEEIKDAINLPKKEERVFFEEASYKRSLEALGTQKKMQV IQKEVQEGKIQGIYYGVALHFVMEQKIKNNLDDLVLLEILCNKMGFLMERESLENVIKHC KKILKNSHFIEILTKGKVKCEIPFLSNGRQKRLDLLVIGENEAFVIDYKSGMQRESYMTQ VLEYMQSVEEILQKPTRGFVFYTEGEGRLVEVIGE >gi|197325098|gb|DS990368.1| GENE 630 636823 - 638148 1684 441 aa, chain + ## HITS:1 COG:jhp1447 KEGG:ns NR:ns ## COG: jhp1447 COG3004 # Protein_GI_number: 15612512 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter # Organism: Helicobacter pylori J99 # 13 437 14 432 438 452 59.0 1e-127 MEVENQKGFLACLKKITQSESFAGVLLLCCAILAMIVANSPLAESYAALWKSKVGFDVNG TFIGMSLEHWINDVLMAFFFLVVGLEIKREVLFGELAGFKRAALPVIAALGGMIGPGIIY FALNAGSASEHGFGIPMATDIAFALGVLSALGKRVSISVKVFLVSLAVADDLGAIIVIAL FYSSGISFAWLAVAAGIVVVLVILNKMGVKALTPYMILGVGLWLAVHNCGIHATIAAVVL AFTIPVAPKIDTLDFMNKIKVVINNFQEAQKKKDGILLQNEQVEALHHIAQHKNAVQNPL LRLEHALAPYSNYLIMPIFAFANAGVTIGSNIDFGVDHVFLGIFCGLVFGKPLGIFLFTF LAEKFGIAARPKGVTWVEIFGAGALGGIGFTMSMFVTNLAFSGEHALVATDVAKISILIA SLTAGILGSIFFFVRDKVTHH >gi|197325098|gb|DS990368.1| GENE 631 638320 - 638589 414 89 aa, chain + ## HITS:1 COG:Cj1094c KEGG:ns NR:ns ## COG: Cj1094c COG1862 # Protein_GI_number: 15792419 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Campylobacter jejuni # 6 89 5 89 90 102 62.0 2e-22 MENAGNIFTQLLPLVVLIAIFYFLIIRPQQKQAKNHREMIASLNKGDKIVTTGGFIVEVV KREEDYFMVRLNEDTIVKLAKDYVAKKAE >gi|197325098|gb|DS990368.1| GENE 632 638595 - 640172 1990 525 aa, chain + ## HITS:1 COG:jhp1449 KEGG:ns NR:ns ## COG: jhp1449 COG0342 # Protein_GI_number: 15612514 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecD # Organism: Helicobacter pylori J99 # 3 525 2 526 526 571 61.0 1e-162 MKKSFNTKLFSFIIAALFGIALSIPSLFQTQGPKITLGLDLQGGLNLLLGVKTEEAVKTR YASLASGINFYALEEQILLDGLRVDLESVVFELLDSNEKTKIDNYLKEIQGLNVLEDNLK YTLTFTEAEIISIENYAIEQAIGNIRNRLDQFGLSEPSVTKQGTDSILVQLPGIKTQEDE QRALELISKGGHLQMMAVDESRNARVHTMTELEAESYGDVILPFVNNPNQKILLKAIPIL DGAMLTDARAAYDQNGQPIINFTLNAQGGKIFGDFSGKNVGNRMAVVLDGKVYSAPVIRE RIGGGSGQISGGFSVQEASDIAIALRSGALPAPITLLEKRSVGPSLGADSIKASMIALIS GAVLVIIFMVFYYGIAGIIANIAMVVNILLVIAVMALFGATLTLPGMAGIILTVGMAVDA NVIINERIREGFRAGENFIKAMENGYANASRAIFDSNLTSLIAAVLLYMFGTGAIKGFAI TMSIGIIASVITAIVGTHGIFRLLQDRIIKSGNYSLWFGYKKRGA >gi|197325098|gb|DS990368.1| GENE 633 640172 - 641143 1206 323 aa, chain + ## HITS:1 COG:HP1549 KEGG:ns NR:ns ## COG: HP1549 COG0341 # Protein_GI_number: 15646156 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecF # Organism: Helicobacter pylori 26695 # 1 323 1 323 323 328 56.0 6e-90 MDFFKHNKIYDFVKMSNYGIVLSLILFIGSLILFVKPGFTLGVDFAGGTIIQIQYSKEAP LADIRQKLESVEDFKGAQVSEFGSPQEILIRLATATSSVNQDIGEEVTNLLKDTGDFQIR RVDIVGPKVGDELREKGILALTLAIISIMAYVAYRYEWRFALASILALIHDVVIAAGAVV LFDVDLSLEVIAALLTLIGYSINDTIIIFDRIRETIGMRASNNLKEVVNEALSATLSRTM LTSLTVFFVVLTLYLFGGEIIKGFSLPMLIGSIVGSYSSIFVASKLVMILGFDLEKYHKK LVDQERKALEKKKMREMYERGRV >gi|197325098|gb|DS990368.1| GENE 634 641153 - 641494 490 113 aa, chain + ## HITS:1 COG:no KEGG:Suden_1573 NR:ns ## KEGG: Suden_1573 # Name: not_defined # Def: hypothetical protein # Organism: T.denitrificans_ATCC33889 # Pathway: not_defined # 1 112 1 112 112 122 63.0 5e-27 MDWGKVIYVFFVLMSLTSTIGFLWEQNIVMLFIAGGVNIISTILKVGVRNYMSAELMAAS LVADLHLIPAFIYMQVLDNINVAVALALGALVANIVSIVFVAIESVRNYNDFN >gi|197325098|gb|DS990368.1| GENE 635 641504 - 643942 2869 812 aa, chain + ## HITS:1 COG:HP1547 KEGG:ns NR:ns ## COG: HP1547 COG0495 # Protein_GI_number: 15646154 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Helicobacter pylori 26695 # 8 811 6 805 806 1055 62.0 0 MEYYAKGIEKKWQDFWENSGEYEPKEDKSLPKKYILSMFPYPSGNIHMGHVRNYCISDAI ARNLRKQGYNVLHPIGWDAFGMPAENAAIKNKTHPKQWTYSNIEHMKKQLYSLGFSFSKT RELATCDLEYSKWEQLLFIEMWEKGLIYRKKGYLNWCPNDQTVLANEQVIEGKCWRCDTQ VIQKEMYQYYIKITDYAEELLQDLESLEGKWPNQVLTMQRNWIGKSQGLSFCFQLEQECQ GIKEFEVFTTRPDTIFGVSYCALAPEHSLVKKMLEGNGLSQEAKEEIIKMQNTSARERSQ QEKCGVPLGIFAIHPLSGEKIPLWVANFVLMDYGSGAVMSVPAHDERDFDFAQKYHLPIK QVIVDKKDPNAPLPYCESGELINSKEYNGMESNEAKKAIIKHFEDQNLGKAVVNFKLRDW GVSRQRYWGTPIPLIHCEKCGILPESKENLPVALPEDVVIDGEGNPLDKHSTWKHCVCPK CGQKALRETDTLDTFVESSWYFLRYTTPQQLRDKMPISPEDEKYWMSVDEYVGGIEHAIL HLLYSRFFTKVLRDLGYTHISEPFSHLLTQGMVTKEGAKMSKSKGNVVDPQEIINTYGAD TARLFILFAAPPVRELEWNDSALEGSFRFIKRLCAKIENVDSIQMLPKIDTSKLSKAEKY ARKKVYEALKKSNETFVHENGYAFNTLIAACMEAINALSEQENREIWSEGYFILLNILEP IIPHICWELSQQYFGLKNFQVIAVDNEALKEDSVTLAITINGKRRDELEVDLETSKEEIL ALAREKVSKWLEGKTLTKEIVVPNKLVNFVVQ >gi|197325098|gb|DS990368.1| GENE 636 643944 - 644444 381 166 aa, chain + ## HITS:1 COG:no KEGG:WS1244 NR:ns ## KEGG: WS1244 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 10 164 7 160 167 148 45.0 1e-34 MKKLFLFLVICVCLVGCGYQPIAHQANKALGGKVFVEVKISLRDPQNSVELKDAISRSIF ERLHSRVVDKQEADSVVEVELQNVLFHSLAENKTGFATFYRCEVNVRFKYTNRYTQSTRI FTKKGYYNFSLGESSNITDSVRIEAINEAVIQALDGFISQVGIETF >gi|197325098|gb|DS990368.1| GENE 637 644444 - 645619 1153 391 aa, chain + ## HITS:1 COG:no KEGG:WS1243 NR:ns ## KEGG: WS1243 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 213 382 301 463 480 80 32.0 2e-13 MQMIQKIAKEALKQLLQEGRDPTPEAYADYFHQQAKKMGLQSYGEHISLKNMLEKIDAEV KENLANKAFKNKDELIIHLIAALNHIYFYKKNFTLYVEIIKILLRILATYPEKSIASLAK SQLLEFDKSNPKIMQIWKEKWNELLKKGPEFQKSKSTLEIISDFEIDNLAFQEWQGEVKE FLKFPKNLKEEDFLRKLEKILKQELGFQKKMQQEETEIIPKERMRYQEASSLPIDSMTTL VSKEGMQKVLDFAEEAFCKQGKNYALVAFGVVGYNKIVADFGNEAGKKILSILGRLLKEY SGPSDWISYYGEEEFLACLLDRQKSEAIEFIKNLDSVVEKSIFVYQQMHFKIKLSAQVLH RANQVSLEDMLKNILIDFQEAKDTQGVISNE >gi|197325098|gb|DS990368.1| GENE 638 645612 - 646751 1200 379 aa, chain + ## HITS:1 COG:HP1545 KEGG:ns NR:ns ## COG: HP1545 COG0285 # Protein_GI_number: 15646152 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Helicobacter pylori 26695 # 1 376 9 390 394 294 45.0 2e-79 MNELEKFLEKKGAEYAPFDPKRAPKILKTLNIPFLKPKVIHIIGTNGKGSTGRFLALMLY QQGFNVGHFTSPHLFGLEERFWNNGKNIALEKLEQAFLEFDTTLLKEASYFEILTFLALK VFRECDYLVLEAGLGGEFDSTTTCVKRDLTLFSAIDIDHQEFLGESLEEIAKTKLNAMAK RAILGIQVHSSVVDIAQKIAQKKQTELLVLDSKSLLPSIKAYCKKHHYARFQEENLALAY SGFKALGFDMNLGELKELDLQGRAQQIAPNIWLDVLHNPNGARAILENFSKEKYILVYNS YLDKNPKEILKILKPIIKRVEIIEISSSRRIPKEQLEDILRGLDLEFIDFCSIQKDEKYL VCGSFCVVAEFLKRRQLWQ >gi|197325098|gb|DS990368.1| GENE 639 646742 - 647677 1063 311 aa, chain + ## HITS:1 COG:HP1543 KEGG:ns NR:ns ## COG: HP1543 COG0739 # Protein_GI_number: 15646150 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Helicobacter pylori 26695 # 1 311 1 312 312 297 45.0 1e-80 MAMKNRFVVTITDITGSKQYNIHQYVKQIILYVILFVVAIFFFSAISIQLLLQEVKQIEN KRDLMQQEFLKINEKNEQLQALIEEKTEELVKVSDKIEDLEGIVGLGEQTDQKDLSLIER VDLASITGAQKAFVMQLIPNGAPLKGEYRITAAWGTRLHPILRRSHSHTGIDFGMPIGTP IYAPADGVADFTGTGYNGGYGIMVKLEHSFGFKTFYAHLSKIVVKRGDFVRRGQLIAYSG NSGRSTGPHLHYEIRYLGRDLDPKPFIEWTMRDYTQIFEKEKNIKWQSLLTMINKLSEIR ETPVLLRKAQE >gi|197325098|gb|DS990368.1| GENE 640 647596 - 648036 574 146 aa, chain + ## HITS:1 COG:jhp1457 KEGG:ns NR:ns ## COG: jhp1457 COG1664 # Protein_GI_number: 15612522 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Integral membrane protein CcmA involved in cell shape determination # Organism: Helicobacter pylori J99 # 1 114 1 114 136 102 49.0 2e-22 MAIFANNDKQVIGNSGNTSIIAQGTRIKGDIISECNLHIDGELEGSIITKNNIVIGKSGN VNGTINAEHLVVSGKLMGNCECSIVEILPQGRIDGEIKAKELIIEKTGEFVGHSITHKNN EIKSAFEKNKPHNDISKKVENVVDTK >gi|197325098|gb|DS990368.1| GENE 641 648134 - 651037 3192 967 aa, chain + ## HITS:1 COG:HP1541 KEGG:ns NR:ns ## COG: HP1541 COG1197 # Protein_GI_number: 15646148 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Helicobacter pylori 26695 # 12 967 43 991 999 923 51.0 0 MADVASFLGFDAYVLEDFRAVFGEDLRSYQDELGEIFKTLKKFYESKEQKILLSPLQTLL NPMPKLELLQGFSLQFGECLELKQFQEKLLYFGYEFVELVEVKGEVSIRGDIIDLFLPNF ENPIRISLFDNEIESMRFFDVQTQLCIQEELDQIEILPAFFNLSGNAYEKLIEKIEELRL QDALQLEGNSIASYGLWFVEGTQNLLEEYLYIKAPNLEDLLNELLEFKEQNQGLLHKILE HSSLEISKNYEDFECAFRNIPSFLEFHQHKKITLIAKTEALVRQAGITPSEHQDYEFVFG KDYGIWILGKEELILSLNTQHKQTKKRANKILIDELKTGDYVVHIDYGVAVFNGITQANI FGATRDFIELKYLGEDKLLLPVENLDRIDRYIADGGIPILDRLGKGSFVKLKEKIKEKLF VIANGIIALAAKRELIDGIIIDTNKEEILVFQGQSGFVYTKDQNQAIQEIFKDLSSGRVM DRLLSGDVGFGKTEVAMNAMLACFLSGYQAAIITPTTLLAYQHFLTIKARFEAFGIKVAR LDRYVSAKEKKSILEGLKQGSVDVVVGTHALLNAVFKKLALIVVDEEHKFGVKQKEKIKE ISQNIHLLSMSATPIPRTLNMALSHIKGLSELKEAPSQRLPTRTFVKTYSDSLFKEVVLR ELRRGGQVFYIHNNISSINQRKEEILSIMPHLKIAILHSQISAQESEDIIMEFAKGGFNL LLCTSIVESGIHLPNANTILVDRSDCFGIADLHQLRGRVGRGSKEGFCYFLIEDPNKITQ EAQKRLMALEKNAYLGSGGALAYHDLEIRGGGNLLGEAQSGHIKNIGYSLYLKMLEEAIY QLSGNVKEEKANIDVKLSVTAFLNPELIASERLRLEIYRRLSRCEEESAVYGIESEIEER FGSLDIYTKQFIALIVIKIKARKRDIVSVLNYQQNITFVDTKGEKKTIVAKSKDEEDILE AVMEYLK >gi|197325098|gb|DS990368.1| GENE 642 651054 - 651869 1036 271 aa, chain + ## HITS:1 COG:aq_1794 KEGG:ns NR:ns ## COG: aq_1794 COG1692 # Protein_GI_number: 15606849 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Aquifex aeolicus # 1 257 1 257 260 175 40.0 1e-43 MRFGFIGDIIGKVGRGLVGDYLGEVRKKYALDCVIANGENASHGFGLSVSTFLELQGYGV DIFTSGNHIWDKKDIFPLLSQKDSVILRPHNYPKGVMGSGIYKGKIKEEKFAVLNLMGSF GMPQCDNAFVCAKKVVESLQEEGIKNIIIDFHAEATSEKRAMFMMLRGKIGAILGTHTHV GTDDLEIFEGTFGVSDVGMSGARKSVIGMEIQEPIEKFLTGVPNRLRIPEGKGIPSIFQM VVFELENGFCKEAFKLKALDNGEIKQTLMAF >gi|197325098|gb|DS990368.1| GENE 643 651896 - 653752 1868 618 aa, chain + ## HITS:1 COG:HP0396 KEGG:ns NR:ns ## COG: HP0396 COG0043 # Protein_GI_number: 15645024 # Func_class: H Coenzyme transport and metabolism # Function: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases # Organism: Helicobacter pylori 26695 # 1 617 1 611 616 697 56.0 0 MRQTLDLLKAHNEVRIISEPLDIHLEIPHLAYLEVKKPNSKALLFTNPIDKQRDINFEIP VLMNLFGSFSRVELLIGDTRQIANDLAFLLKLKPPKNFKEIMQTLPKLLSLRYLSPKVVK NRGLCQEVIKTGSEVDLQSLPILKTWSEDGGAFITMGQCYTQSLDGSVRNLGMYRLQVYD KNHLGLHWQIHKDSVGIFEEYKKANQKMPVSIAIGGNPLYTWCATAPLPYGIFELMLYGF IKKEKARLVKCVSNELCVPYDSDLVIEGFVDTNELRDEGRFGDHTGFYTPIEPYPVLEVS AITHKKNPIYLASVVGKPPLEDKYLGYPTERIFLPLLQTTTPSLIDYFMPENGVFHNLIL AKIEARFPSAAKQSMHSFWGVGQMSFVKHAIFVGEDAPSLESKDIIPYILNRFSVKNCLF SEGVCDALDHASPNFAEGGKLGVDCTGEEIENPQLEILENEILLKQMKDIFPKAEILRQY FKETKNPITLLGVKKDSNESLQKYLKESLFQTLQKHIKILVLLDWEKNDLENLYMILWRV VNNIDSKRDIRIFGDIIIIDATDKNIADGYKREWPKETDCDVKILESLKQKGLLEDFDEE ELKEFYRKFHIDKSYATR >gi|197325098|gb|DS990368.1| GENE 644 653819 - 654361 604 180 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418283|ref|ZP_03656289.1| ## NR: gi|224418283|ref|ZP_03656289.1| hypothetical protein HcanM9_03290 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0958 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0958 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 180 1 180 180 313 100.0 2e-84 MLKHCFIATFIGIFLAACAQKQNTIQLITLQKACQTPIVSYQLGNLKVGQFNDLKIPKEQ VLSAIENALQTSGCFTKANKNTSKYYILESVYGSINQQAKQGGFWQSTSQDTAIIEILLA FSNDKETKFYKSKASFKNTADKFLGIGENSNLDSIHIQLTLNNAIYSAVNKATQDFLKQK >gi|197325098|gb|DS990368.1| GENE 645 654468 - 655100 383 210 aa, chain + ## HITS:1 COG:no KEGG:WS1936 NR:ns ## KEGG: WS1936 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 31 204 45 218 246 89 37.0 9e-17 MFIKKNLLAHLVLLFCLCGSALYCYFYVKEVSQKQDTLLYYINISGKQRFLAQRIVFLSQ VAATNYVLKRNNYENFMELRLCINQLLTIHNVLRDFAVSMIVQNQERSTLDDIYFGSGNL VVKMESFLNDANQTFILHNVEAFLENNQKLLMALEGDNGLLTSLELATLSQQFYTQNILK DSEKKINYFLCIVLIFIVLEIFLLPKKPKS >gi|197325098|gb|DS990368.1| GENE 646 655090 - 655623 539 177 aa, chain - ## HITS:1 COG:HP0737 KEGG:ns NR:ns ## COG: HP0737 COG1267 # Protein_GI_number: 15645357 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Helicobacter pylori 26695 # 21 166 10 154 158 135 53.0 3e-32 MQNKNFFLQFQNTKDFLCKMYLTLFFSGLSKKAPGTIGTLIALPFGWAIAYFIAPSTLFL LALLVSVIAIKMIDNYENQGLNHDRQEIVIDELAGVWISITMIGHTYFALLLSFVLFRIF DIWKPSIIGRVDKNIKGGLGVMGDDLLAGFFAGLLGLILIKLLSQFQTFENLLKLSF >gi|197325098|gb|DS990368.1| GENE 647 655633 - 656817 1090 394 aa, chain - ## HITS:1 COG:Cj1609 KEGG:ns NR:ns ## COG: Cj1609 COG2046 # Protein_GI_number: 15792914 # Func_class: P Inorganic ion transport and metabolism # Function: ATP sulfurylase (sulfate adenylyltransferase) # Organism: Campylobacter jejuni # 1 389 1 381 386 253 36.0 4e-67 MESLRKNKSLFIDKEALFALFLCKEGLLAPVDHLINEDEMHQSEKNQIFPLSFILAPAGK RNQEILQNVSKGKTLNLICDHKICGELVVDSTFCIDKKQRLMRITGGDIYSKKAQDIYKR LGDFAVCGDYQLDPQITYPINKGIKETILQIKKNLQASSITAMMLDVSPITRIHERIFRL ILDENELLVLFLFKKQKEDLLSFQIRKQCLEYVIENYLPKNRIIIFPLNDIYLFEGTHGI LLNAIISQNLGCDKMVIGETHPNLAFYYEKQKIYSVFDTTKEIKIKIKFLSEFVYCQQCK TIVSVKTCPHGKHHHINYHARFIQGILQSGLIPPTILVRKEVSAKILAYLFPNRFSNLIK QFGTMFADNGIIKEQSEEDFYIKLSLLYQTHSLN >gi|197325098|gb|DS990368.1| GENE 648 656795 - 657685 873 296 aa, chain - ## HITS:1 COG:Cj1608_1 KEGG:ns NR:ns ## COG: Cj1608_1 COG0784 # Protein_GI_number: 15792913 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Campylobacter jejuni # 1 113 1 111 118 91 53.0 1e-18 MEILIVENEVYLAQSIASKLSHLGFNCEITSSIQEALEQDKADIVLLSTNISGQNFYPLI EKFHDSIIILMIPYINDETVTRPLQAGASDYIVKPFMIDELVRKIEQHNNFKQSQKEIAF YRDYLCNSLLTFSYTINSKISFPLIIKSTSQKAIDMCVAHYAIHKKLPINFLSLYEISDY NKLLKSISKQKLNYAIGFETLSRENKENYIKSLKNIPIIFSSINGDVEDFANVYEVEAKD ISQGFQEEILSVDEYVKTMILNFEDKYPDTELSKKLGMSRKSLWEKRKKYGITKKK >gi|197325098|gb|DS990368.1| GENE 649 657695 - 658843 1144 382 aa, chain - ## HITS:1 COG:HP1020_2 KEGG:ns NR:ns ## COG: HP1020_2 COG0245 # Protein_GI_number: 15645634 # Func_class: I Lipid transport and metabolism # Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase # Organism: Helicobacter pylori 26695 # 207 375 1 170 174 170 47.0 5e-42 MRNVALILLGAGDSSRFKTQKAPKKQWLRIDEIPLWLKVAKEVVSYYPFCKCILSIKEEE KKYTQKYLNSFNLNFILTKGGETRQESLQNALLEVKEEWVLVSDIARCNMPKDIFIKILS ATNQYDCVVPYLNIPDTIAYGDETPQYLKREKLKIIQTPQLSKTEILKKALLKGDFTDES SAIASYGGSIAYLEGSKEGRKITYLEDLQSLQLLSPSSKSMIGLGSDIHAMKSGNGIILG GIMIPCEYQLIAHSDGDVCLHALSDAILGGIGAGDIGEWFPDNDDAYKNADSAKLLQKIV NFTLDVGYIIKQVDLTIFAQKPKISPYKNAIEKRIAEILEIPLFCVNVKATTTEKLGFIG RKEGIMVQANVILEYFNWKKLL >gi|197325098|gb|DS990368.1| GENE 650 658929 - 660572 2169 547 aa, chain - ## HITS:1 COG:PA2573 KEGG:ns NR:ns ## COG: PA2573 COG0840 # Protein_GI_number: 15597769 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Pseudomonas aeruginosa # 199 547 184 535 535 156 28.0 1e-37 MIGKNLSLKSQLFIGFGIILAFIILIAATGYVKIKFVDNTLTEISDVNSIKQRYAINFRG SVHDRAIAIRDVVLLEDPNELEATLNQIKELENFYRDSSEKMDQIFQNPAMVDAKDKDIL SRIKEVEKTTMPLIINIIELKANGNLSAAHDMLLSQARGAFVQWLAVINEFIDHQEAKNQ ALTITARGEIGNYLNLVLWLAGIAFVIAILIASYITKLIISSLGGEPKEAVKVVLSIANG NLNTPIHTNYQESMLASVGQMQKKLKEIVSEVMNSSRELNERANEVANSSEEAKASSYKQ LDSSEDSVQKIEEVVNAVAHVSQIAKQTEENSGITTSLSNKGIEAMKTTINEIEKITQTV SSSSEHIRMLEKHSQEISGSAELIKEITDQTNLLALNAAIEAARAGEAGRGFAVVADEIR KLAERTGVATSEIARMIEVIQNETQTAVEAIQTAVPQVEKGMQLANEASEILDQINTQAT DSLNKAREVTSAAENQAANMENLANDLKEISEASRNTAGGMENNTESAKMLKEISSVLKN HINHFKL >gi|197325098|gb|DS990368.1| GENE 651 660627 - 661916 1204 429 aa, chain - ## HITS:1 COG:Cj0991c KEGG:ns NR:ns ## COG: Cj0991c COG0247 # Protein_GI_number: 15792318 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Campylobacter jejuni # 9 424 3 421 421 426 49.0 1e-119 MEHFKDYNYLKTSDACVKCGKCLPDCTIFNINGDEATSPRGFIDLLGAYQRKEIPLDKNA KNIFETCFLCTTCVSVCPNSLPTDTLIENIRYEIAQKYGIAWFKRIFFYLLKHRKIMDLS MKLGAFFTPLLFQKTDDNHSIKPRFKLPFISNRIFGAIQTKSFLNSHQENLIYHKDNPKK VAIFIGCLGNYNYKSVGESLVFILQKLGINTMIPKKQKCCGAPAYFTGDFESVNQLITEN IAYFESFIDEVEAILIPEATCAAMILEDWERFMEKNPSYQQRIQKLLPKIHMATHWLMHN TNLKDYLSTLPKSQETFTYHDPCHARKVLGIWKEPRELLRQNYDLIEMEDPNTCCGFGGV TMQTERFNLASKVGSKKAKMIDKTQAKYVVAECSACRMQLNNALHQEKVKTLFAHPLELI EKAIKTARI >gi|197325098|gb|DS990368.1| GENE 652 661925 - 663295 1278 456 aa, chain - ## HITS:1 COG:Cj0992c KEGG:ns NR:ns ## COG: Cj0992c COG0635 # Protein_GI_number: 15792319 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Campylobacter jejuni # 6 456 3 451 451 568 60.0 1e-162 MKEVIDFKKFAKFSKPGPRYTSYPTAVEFNENYTYDSYMQDLQKDTNPLSLYVHLPFCRS ACYFCGCNVIYTSKEENKTLYLEELQKELRILKNTLDYTKQVYQLHFGGGTPTFFNAKEL EFLIQMLKDTFPNFHTEAEIACEIDPRFFNKDQMQVLKNGGFNRLSFGIQDFNPKVQEAI HRIQPFSLVQNAISIARDFGIRSINFDLIYGLPYQTLETFQETLSQCLKLNPDRFAIFNY AHVPWIKKTMRKIDETTLPMPEEKLNILKTTIQHLQENGYKMIGMDHFAKPDDELFKSIQ KGQLRRNFQGYSTKGGTQTIGIGLTSIGEGIDYYAQNYKDLPSYKKALDLGILPFSKGIK LSLDDRIRKSVIMQLMSNFKLDFSTIEKQFNINFKEYFSDSLKELEVFTAENLITIHNNG IEVSPTGTLLIRNIVMAFDAYIKKFSPNQKIFSKTI >gi|197325098|gb|DS990368.1| GENE 653 663307 - 663735 418 142 aa, chain - ## HITS:1 COG:no KEGG:CCC13826_0886 NR:ns ## KEGG: CCC13826_0886 # Name: not_defined # Def: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1) # Organism: C.concisus # Pathway: not_defined # 52 133 58 147 161 62 36.0 5e-09 MATPKPLIKYKKANDYQELKQALLEAKDNTLPLPQTLEFPKEKERMIYCFKDSNNKEYYL LSSSCINSLIESAKELEKNKYLLKLEQEIHKNMPIDFEDVWCIAIKELAGKFNKNPKNLI KNIRKRYPYLFIDFNLSLNQTY >gi|197325098|gb|DS990368.1| GENE 654 663714 - 663953 128 79 aa, chain - ## HITS:1 COG:PAB1502 KEGG:ns NR:ns ## COG: PAB1502 COG0078 # Protein_GI_number: 14521522 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Pyrococcus abyssi # 1 75 235 309 317 87 52.0 5e-18 MGQENEKEARKKAFKGYCITKDSMQLAKPDCIFLHCLPAYREQEVSEEVLESSQSKIFLE AENRLHAQKGVMVWLHQNR >gi|197325098|gb|DS990368.1| GENE 655 664075 - 664665 847 196 aa, chain - ## HITS:1 COG:Cj0994c KEGG:ns NR:ns ## COG: Cj0994c COG0078 # Protein_GI_number: 15792321 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Campylobacter jejuni # 1 193 1 190 306 219 55.0 2e-57 MRHFLTLADFSKQEILEILDIAKSLKKDLKAGKYSNLLERKTLGMIFEKNSTRTRVSFET GIYQLGGQGIFLSSNETQLGRGEPIKDTSRVLSSMVDLIMMRTHEHARLEEFAHYSSIPV INGLSDSFHPMQLLADYLTMQECQKDKNPIVTYVGDGNNMAHSWLMLAAKMGFELRIASP KNYEVSPDIYQKARAS >gi|197325098|gb|DS990368.1| GENE 656 664769 - 665113 354 114 aa, chain + ## HITS:1 COG:Cj0627 KEGG:ns NR:ns ## COG: Cj0627 COG0375 # Protein_GI_number: 15791987 # Func_class: R General function prediction only # Function: Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) # Organism: Campylobacter jejuni # 1 114 1 114 114 82 46.0 1e-16 MHEFSIVASLIENCERIAKENNAESIFEIYLEIGRRSGVNAALLQRAFEEFKVGSMCDGA KLFIEDVEVEVFCEFCKKQSQVVEICYTKCPLCQNEGVKIVKGTEMLIKRLVME >gi|197325098|gb|DS990368.1| GENE 657 665091 - 665582 509 163 aa, chain - ## HITS:1 COG:Cj0904c KEGG:ns NR:ns ## COG: Cj0904c COG0219 # Protein_GI_number: 15792234 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Campylobacter jejuni # 9 157 2 153 155 146 48.0 1e-35 MHQGNKMQFHIVLHQPRIPQNTGNIGRLCFASDSVLHLIHPLGFSITQKELKRAGMDYWN HLEVYEWENLSSFMESSLLEIPHCYLTTKSQTPYYNAPLKKGAYLHFGREDAGLDSTLLS HYKDYCYTIPMQNNARSLNLATSVGIVLYEGIRQRDFIPSPIA >gi|197325098|gb|DS990368.1| GENE 658 665587 - 665883 294 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418297|ref|ZP_03656303.1| ## NR: gi|224418297|ref|ZP_03656303.1| hypothetical protein HcanM9_03360 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0971 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0971 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 98 1 98 98 142 100.0 1e-32 MPKPNKQQQIKNIQLDIIKHQFSNFCKHNSKALALIFKVLIKGENAAQSNPKLNTQNKSI NSIESSKTNHKTNQESTIHLKELELDIPLPKPPLNIEG >gi|197325098|gb|DS990368.1| GENE 659 665917 - 666393 716 158 aa, chain - ## HITS:1 COG:RSp0203 KEGG:ns NR:ns ## COG: RSp0203 COG1607 # Protein_GI_number: 17548424 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Ralstonia solanacearum # 13 157 8 152 164 185 61.0 3e-47 MDNLENVFDIKSLTMSVLMTPAMANFKGRVHGGDLLKLLDQVAYACASRYCGEYVVTLSV DSVTFKYPIEVGNLVTFLASVNYTGTSSLEVGIKVIAEDIHKRIVTHTNSAYLTMVCVDK NGKPFPAPKLEPKTPTEIRRYNNAMKRKQARIELSKKK >gi|197325098|gb|DS990368.1| GENE 660 666569 - 667651 856 360 aa, chain + ## HITS:1 COG:Cj1039 KEGG:ns NR:ns ## COG: Cj1039 COG0707 # Protein_GI_number: 15792366 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Campylobacter jejuni # 12 349 12 333 342 262 42.0 9e-70 MKVMITGGGTGGHLSVAKAFLEEFYQRGYTCFFMGSIGGQDRAYFEEDSRLFKKYFLHTG GVVNQKGFKKIFALFSHFRAFLLARKILKSEKIDFVFSVGGYSAAPAAFGAVFLRIPLII HEQNAKIGRLNKILKPYAKLFFSSYLEDSLIKFYPVQKDFFQYSRTREQIQNILFMGGSQ GAQAINNFALKVVLELKKRGIRVYHQCGKGDFKRVLSEYEKMPLKVTHISNIEDLQGNFD VAIFDFCKFMPQVFMACDFAISRAGASSLWELCANGLMTLFVPYPYAAANHQYFNAKFLK DRKLGFLCEEKDLSCEVLWDILSLSQQDIKQISQALQKECNANAVKEMADCVEVTLRSQK >gi|197325098|gb|DS990368.1| GENE 661 667952 - 668443 716 163 aa, chain - ## HITS:1 COG:HP0391 KEGG:ns NR:ns ## COG: HP0391 COG0835 # Protein_GI_number: 15645019 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis signal transduction protein # Organism: Helicobacter pylori 26695 # 1 163 1 165 165 197 58.0 7e-51 MSNQLRDVLQKQQEQKKPTSEAENIIQLVAFVVGSEEFAVPILSIQEIIKPLEYTRVPGV PNYVLGVFNMRGWVVPLINLRLKFGLPYEKPTEDTRYIVIRNQEERAGFVIDRLTEAVRI KESDIDPTPETITQDENLIYGVGKRDDRLITILRPEELLKRTF >gi|197325098|gb|DS990368.1| GENE 662 668443 - 670839 3032 798 aa, chain - ## HITS:1 COG:HP0392_1 KEGG:ns NR:ns ## COG: HP0392_1 COG0643 # Protein_GI_number: 15645020 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis protein histidine kinase and related kinases # Organism: Helicobacter pylori 26695 # 1 645 1 651 651 784 67.0 0 MDEMQEILEDFLIEAFEMIEQLDQDLVELENRPEDLELLNRIFRVAHTIKGSGSFLNFSV LTHLTHHMEDVLNKARHGELIITPDIMDVVLESIDFMKKLLNAIRDTGTDANTGLDADIA NVVARLDAISKGETPQETAAAAPAQQEAAQTQEAESQTKPEEEEKELDYSNMSPEEIEKE IERLLNKRQEEDKKKREDKKARGEVNDIQAPKEITETPAAATQAPKPSPKPADPKPQAKP TPRQDDNKTLATSVEQTIRVDVKRLDSLMNLIGELVLGKNRLIKIYNDVEERYEGEKFLE ELNQVVASVSMVTTDIQLAVMKTRMLPIGRVFNKFPRMVRDLSRELGKNIELIISGEETE LDKSIVEEIGDPLVHLIRNACDHGIESKEERIAAGKKEQGTVELKAYNEGNHIVVEITDD GKGMDPVILKSKAVEKGIISEREADSMTDREAYSLIFKAGFSTAKVVTNVSGRGVGMDVV KTNIEKLNGIIDVDSTYGEGTTLKLKIPLTLAIIQSLLVGVQEEYYAIPLASVIETVRIS QDEIYTVENKSVLRLRNEVLPLVRLADIFGVDSVFDNAEQAYVVVIGLAENKIGVIVDFL IGQEEVVIKSLGSYLKGTEGIAGATIRGDGRVTLIVDIAAMMQMAKQVKVSINKLAQESE TKKEKNSPSDYNVLIVDDSMTDRAIMKKSLKPLGISITEATNGMEALEIVKNGDKFFDAI LIDIEMPKMDGYTLAGEIRKYAKFKNLPLIAVTSRTSKTDRMRGVESGMTEYITKPYSPE YLMNVVKRNINLTMEVTE >gi|197325098|gb|DS990368.1| GENE 663 670871 - 671836 1005 321 aa, chain - ## HITS:1 COG:Cj0285c_1 KEGG:ns NR:ns ## COG: Cj0285c_1 COG0835 # Protein_GI_number: 15791655 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis signal transduction protein # Organism: Campylobacter jejuni # 8 177 5 173 177 238 68.0 1e-62 MSNLEKNDTLKIGTNEMELVDFRIYKVEKGKIYEGVYGINVAKVNEIIRLPELTELPGVP EYIEGIFDLRGVVIPVINLAKWMNVETPKNKKIKPRVIIAEFNNIMIGFIVHEAKRIRRI SWKDIEPAHFSSSAHDNLDKSRVTGVTRIEGDQVLLILDLESIVQDLGFYHPEISSDHTY NKFDGLALILDDSSIARKIIKDFLEKMGFSVIEANDGADGLQKLEKLYENYKENLTKQLK IIISDIEMPQMDGFHFAAKVKEDPRFSKIPIIFSSSISDQFSESRGKEAGAESYLVKFDG NKFHEEVSRIVSKYNQELENA >gi|197325098|gb|DS990368.1| GENE 664 671836 - 672252 138 138 aa, chain - ## HITS:1 COG:no KEGG:WS2085 NR:ns ## KEGG: WS2085 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: Lipopolysaccharide biosynthesis [PATH:wsu00540]; Metabolic pathways [PATH:wsu01100] # 2 134 107 239 246 70 30.0 2e-11 MQPICFLFNQQKAYLAHGDIFLNWRYHFYTHLIRNHFVLAFLNNFSSILYPKLLFYLQNK KKIKYNYPKDFIDNRIHKYKENLDIPSNSYIIEGHFHLGKIKRLHSINYIGLPLFTCKKT YFIVEFDNYSLSFKTKEF >gi|197325098|gb|DS990368.1| GENE 665 672532 - 672741 157 69 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253827626|ref|ZP_04870511.1| ## NR: gi|253827626|ref|ZP_04870511.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] # 1 66 1 66 242 124 100.0 3e-27 MQPISIQKNAIFIADSHHHSLYNNVLDDFLTSLLQVSKRQIFLMGDIFDFLVGEIPKSII DNQKTLVAS >gi|197325098|gb|DS990368.1| GENE 666 672742 - 673752 1251 336 aa, chain - ## HITS:1 COG:aq_1879 KEGG:ns NR:ns ## COG: aq_1879 COG0002 # Protein_GI_number: 15606911 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate semialdehyde dehydrogenase # Organism: Aquifex aeolicus # 3 336 5 340 340 245 41.0 1e-64 MKIKVGIVGVSGYTGLELVKILINHPIFDLHTLCATESCSDITLLHPSLKNTLSMPILEA RIEQIAKECELVFLALPHQKAMEYVKALSVKNIKIVDLSADYRLSAEKYEESYCPHLDKE NLKNAVYGLPEYNRNLIKNTNLVANPGCYPTASLLAILPFISHLDSSQTLYIDAKSGVSG AGKKLTQTSHFVTINENLFAYSPITHRHCPEISEQIKKIGKIDFKTLFVPHLIPITRGML VSIYAKLKEEIDPLEILQQHYKDEFFVRISKNCVQIKNVAGTHFCDIYAKNDGKDLFINS SIDNLLRGASSQAVANANLMFDLDEKLGLPQIAYIP >gi|197325098|gb|DS990368.1| GENE 667 673823 - 674020 399 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418306|ref|ZP_03656312.1| ## NR: gi|224418306|ref|ZP_03656312.1| thiamine biosynthesis protein ThiS [Helicobacter canadensis MIT 98-5491] putative thiamine biosynthesis protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] putative thiamine biosynthesis protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 65 1 65 65 118 100.0 2e-25 MELKLNGQFIATHSKNLLELLKEYKIEQKSVAIAVNLEVIKQDQWKNYTLKNGDVIECFT FLGGG >gi|197325098|gb|DS990368.1| GENE 668 674065 - 675372 1280 435 aa, chain - ## HITS:1 COG:HP0683 KEGG:ns NR:ns ## COG: HP0683 COG1207 # Protein_GI_number: 15645307 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Helicobacter pylori 26695 # 6 433 2 432 433 424 50.0 1e-118 METSQLSIVILAAGKGTRMKSQTPKVLHQICGKEMLYYTIKESLKLSNDVSVVLGYEANK IKETMEKYFSDKISFIFQDTETYPGTGGALKNYQPKYQKILVLNGDMPLIQANELQQFIN AKGDIIMSVIDLPNTNGYGRVVIQDNQVQAIIEEKDANPEILALSTLNAGVYCFKSEILQ TYLPKLQNNNAQKEYYLTDIITLAKQDSKIITPLFVELENFKGVNDKADLADAEIILGNQ IKKTLMKQGVIMRLPHTIYIEEGVKFKGECIIENGVSLCGDTEIINSHIKSHSIIESSYI ENSDVGPMAHLRPQSVLKNTHIGNFVEVKKSTLNGIKAGHLSYLGDCEIDEGTNIGAGFI TCNYNGKAKFQTKIGKNVFIGSDSQAVAPIIIEDNCIIGAGSTIRENIKQGELFLTKGEK IRKEGFFYKFFSKKT >gi|197325098|gb|DS990368.1| GENE 669 675494 - 676258 1050 254 aa, chain + ## HITS:1 COG:BB0281 KEGG:ns NR:ns ## COG: BB0281 COG1291 # Protein_GI_number: 15594626 # Func_class: N Cell motility # Function: Flagellar motor component # Organism: Borrelia burgdorferi # 1 249 1 250 260 206 45.0 2e-53 MDLATVIGMSLSFILIGTAMMLGVGIGPYIDIPSALITIGGSITSLFIGYKMENVKKIFT YFLVAFKPQTFDVLGLVKKLVDYSTQARRDGILSLEQQSNQEENDFLKRGLNMAIDGAEP DSIRSLLEMDLDRTLERHKANAGIFDTWAAYAGAYGMLGTLIGLVAMLLNMSDPSSIGPA MAVALITTLYGSMVGNIVGSPIANILNIRANDEALVKLMIIEGIMSIQAGDNPRALEAKL LTFLPPNQRVSQFE >gi|197325098|gb|DS990368.1| GENE 670 676277 - 677107 926 276 aa, chain + ## HITS:1 COG:jhp0752 KEGG:ns NR:ns ## COG: jhp0752 COG1360 # Protein_GI_number: 15611819 # Func_class: N Cell motility # Function: Flagellar motor protein # Organism: Helicobacter pylori J99 # 1 253 1 248 257 94 27.0 2e-19 MAKRCPSCDCPQVMPLWLGTYGDMVTLILTFFILLLTMVTFDAKKLTEAEGSIRGSLSVL SGGIKIEESRNRILQQADITTDPETAEQIIKVQSEILEFKEDARVSLGPSVVEDDGKEGF ILRFHGRLLFDEEKTAIENADEILFLKRLALILQKMPQTMHLDIIGYADNVEGKPNLKYQ DSLGLSALRASNVAKILIENQVNPQKITSLGGGATNFLLPNTNAENRAQNRRVEFHFYPQ DRHLHRVQNVLDKTKEQKLYEQSQKNAPTALQNNEN >gi|197325098|gb|DS990368.1| GENE 671 677117 - 677869 883 250 aa, chain + ## HITS:1 COG:Cj0820c KEGG:ns NR:ns ## COG: Cj0820c COG1338 # Protein_GI_number: 15792158 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliP # Organism: Campylobacter jejuni # 27 249 20 242 244 262 67.0 5e-70 MLRILLWMACFIVVAFSAPPELPQSPTIPTIDLTLSGPNEPADLVAILNIVVVLTLLVLA PSLILMATSFARLLIVFSFLRTALGTQQSPPTQLLVSFALILTMFIMEPVFKEGYEQGVK PYVAKEISYQEAFVRASQPFKDFMIRNTRPKDLALFYRIRGMENPQTAQDVPFTIALPAF IISEMKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPTMISLPFKILIFILVDGFNL LTMNLVESFR >gi|197325098|gb|DS990368.1| GENE 672 677869 - 678312 295 147 aa, chain + ## HITS:1 COG:no KEGG:SUN_1832 NR:ns ## KEGG: SUN_1832 # Name: trmA # Def: tRNA (uracil-5-)-methyltransferase (EC:2.1.1.35) # Organism: Sulfurovum_NBC37-1 # Pathway: not_defined # 1 145 1 152 371 84 34.0 1e-15 MVCVYLGVCGGCSILEECSLESKVDYAKQLLGINQCDIVSLRQDSFRARCELGIFFKDDK INYAMRKGKQFVCIENCCNLLESLQKFLPVLKKKLNQEFFKDFRQKLFAIEVLSTQNDEI LLTLIYHKKLNETWLENAKELKKALPS >gi|197325098|gb|DS990368.1| GENE 673 678680 - 679189 719 169 aa, chain + ## HITS:1 COG:HP1172 KEGG:ns NR:ns ## COG: HP1172 COG0834 # Protein_GI_number: 15645786 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Helicobacter pylori 26695 # 1 160 109 268 277 226 70.0 2e-59 MANFTKTPEREAVVDFALPYMKVALGVVSKDGAIKSIEDLKGKKLIVNKGTTADFYFSKN HPEIELLKYDQNTETFLALKDGRGDALAHDNLLVFAWAKENPGFEVGITKLGNEDVIAPA VKKGDKELLEWLNKEIDTLNKNGFMKEAYQETLAPIYGEDNLNSVLFVE >gi|197325098|gb|DS990368.1| GENE 674 679190 - 679846 545 218 aa, chain - ## HITS:1 COG:Cj0595c KEGG:ns NR:ns ## COG: Cj0595c COG0177 # Protein_GI_number: 15791955 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Campylobacter jejuni # 17 213 7 203 208 254 69.0 6e-68 MQNKKIKKATKKEIQTIKALFLEHYKNAKTELIYRNDYELLIAVMLSAQCTDKRVNLITP ALFDQYPTPQDLKDAPLEDIKNLIKSCSFFNNKATNLKAMAKEVCEKFDGVIPLDREALK SLPGVGQKTANVVLIESKEANFIAVDTHVFRVSHRLGLSNANTPLKTEEDLTKIFADNLA TLHQAMVLFGRYICKALNPQCQNCFLSHLCKSKMSYKC >gi|197325098|gb|DS990368.1| GENE 675 679858 - 680778 1003 306 aa, chain - ## HITS:1 COG:no KEGG:WS1062 NR:ns ## KEGG: WS1062 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 305 532 836 838 177 33.0 4e-43 MQLNFHYTPNEISLSSNDSTFKFHKNNETRQLELTNLIIALDNIQTNTNSNVNSPLLIIG KNSPLEFKNHTILSDSFSFSFVNDELKATLKHKNGQAQIYKKGDYITLDAKEFGDTFVNA LANKNIVTQGRFSINANTNPKGALIGKLGILNTNINQLSILQNLMAFIDTIPSLLTFKTP GFNNQGYYLEEGNIIFGYNQDFLAIENLDFKGSSIDIQGKGIISLKNQNIDFYAQLITAK SLSGIINKIPLVNYILLGKEGKISTGFSITGDLKNPTITTKTAQDILLSPFNILKRVITS PFEIFN >gi|197325098|gb|DS990368.1| GENE 676 681253 - 682626 935 457 aa, chain - ## HITS:1 COG:no KEGG:WS1062 NR:ns ## KEGG: WS1062 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 25 441 8 419 838 196 29.0 2e-48 MKKASTRLLKITFFLTFILGAFILLYTFLYNGIKIQQLKIAGVEIEEFYLRLDKKLILEI QTLNLSHLQTSKSTSNDIKQQIQYVKNIHLLLQYFQKIEIRNIIFNNYQANLSYDGKHFL VNLPQIYAKLNMAQKASQITIDFEDIYLKEYGIYYRGSSQYNLIKQTFNSNGKLNFLNRQ SYKILASLDLNLKGDFKKVIINGSSDTFKNINFLLPLLPPFKNQLLKEWIFNNYQITSAQ IKEFSLTLPLDSKNLIKDSLDSLYVVGEIRDAKVTFQKGLSPILSPNVKLIFQNNTLEFH PNQPTYEHINLQGSQVAITNIFQIPTLEIFIQTRSTLDDTISNLLKSYHISLPIKAPKTQ IDANLALKFNLKNDTIVYNKGIFKAQDAQILFNALEFDSKNLLVNMENHLIEISTQNTSY KDLLLADFNFILDTNNKTINGDLLAHSLILDHNSPAS >gi|197325098|gb|DS990368.1| GENE 677 682559 - 683509 708 316 aa, chain + ## HITS:1 COG:Cj0529c KEGG:ns NR:ns ## COG: Cj0529c COG1559 # Protein_GI_number: 15791890 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Campylobacter jejuni # 1 310 9 323 333 293 49.0 3e-79 MNAPNIKVKKKVIFSNLVDAFFIVVIVLCFYLQLPINSSRIVYIPQGGTNEIIAYLDQNN FDVNPFDGYMLHFFGYLQSGWLDIGKTKLSKGDFLYGLMNSKAALEDITLIPGETLYFFI EGIAKQLNLDPKKLELFYKQYAPYEEGVILANTYKIPKGISEKHLMYYLVNTSLKEHKKW AIKFLGEYDQKQWFRYVTIASIIQKESANVEEMPLVAAVIHNRLKLKMRLQMDGALNYGR FSHTKVTPEMIRNDTTSYNTYRYNGIPNAPVGSVSFKAIQAAIFPANVDYLYFVRNKNGT HSFSKTYKEHLNNFSQ >gi|197325098|gb|DS990368.1| GENE 678 683654 - 684601 1246 315 aa, chain + ## HITS:1 COG:RC0520 KEGG:ns NR:ns ## COG: RC0520 COG0039 # Protein_GI_number: 15892443 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Rickettsia conorii # 1 309 1 314 314 251 42.0 2e-66 MERVKRVGIIGAGNVGSTLAYILSATTPYQIVLRDKDKDRARGMLLDMFQASCVGEKFAK LDVIASPKDLGGCDVIVVAAGSPRLPGMSRNDLLFANAKVIGEIAKDIKENSPEAIVILV TNPLDAMVYTMLRETGFNPRQILGMAGILDSARMASFIYEKLQCAPGQIVAPVMGGHGDD MVPLPRFCMVNGVPLNELLEESQIEEVVQRTRNAGAEIVSCLKKGSAYFAPARATAEMVC AIMSDSHKILPCSVLLQGEYGYHDVVGGVPVELGIHGIERVVELKLLPEEKQQFDKSIQS VQGLIDALKTDYFNS >gi|197325098|gb|DS990368.1| GENE 679 684674 - 684985 479 103 aa, chain + ## HITS:1 COG:Cj0535 KEGG:ns NR:ns ## COG: Cj0535 COG1146 # Protein_GI_number: 15791896 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Campylobacter jejuni # 4 103 3 102 103 132 65.0 1e-31 MGLLKAPENTPVWVNESRCKACDLCVSVCPSGTLAMRLDEHKVLGKMVEVISPENCIGCC ECELHCPDFAIAVADRKEFKFAKLTDESRQRAEAIKANGFMAL >gi|197325098|gb|DS990368.1| GENE 680 684930 - 686123 1392 397 aa, chain + ## HITS:1 COG:HP0589 KEGG:ns NR:ns ## COG: HP0589 COG0674 # Protein_GI_number: 15645214 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Helicobacter pylori 26695 # 25 397 2 375 375 527 68.0 1e-149 MNQDKELKQLKQMALWHYKENKVSREFISNGNELVAHAAIDAGCRFFGGYPITPSSEIAH EMSVFLPRENGAFIQMEDEIGGISVALGASMSGTKAMTATSGPGISLKSEQIGYGFMAEI PLVVVDVMRGGPSTGLPTRVAQGDVAQAAHPTHGDFQSIALCPGSLEEAYTETIRAFNLA EKFMTPVFLLLDETLGHMHGKAIVPDLAEVQKTIINRRVFNGDKNDYKPYNVSQDEPAIL NPFFQGYRYHITGLHHGPTGFPTEDATLSQNLIDRLFNKILSKRDEIVTYEEYCLEDAEI LLIAYGSTARSAKEAIDRLRKEGVKVGLFRPITLWPSPRKELEKLGKRFDKILVAELNKG QYVVEVEHSMKKEVQLLAKANGRPLSPIEIANKIKEL >gi|197325098|gb|DS990368.1| GENE 681 686125 - 686958 1016 277 aa, chain + ## HITS:1 COG:jhp0538 KEGG:ns NR:ns ## COG: jhp0538 COG1013 # Protein_GI_number: 15611605 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit # Organism: Helicobacter pylori J99 # 1 273 1 273 273 474 77.0 1e-134 MAFNYDEYLRVDKMPTLWCWGCGDGVILKAIVRAIDKLGWNMDDVCLVSGIGCSGRISSY VNCNTVHTTHGRTLAYATGIKLANPTKKVIVVGGDGDGLAIGGNHTIHACRRNIDINYVL INNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPNFDACSLASAAGASFVARESVLDPKKI EKVLVEGFQHEGFSFFDIFSNCHVNLGRKNKMGEAVDTLKWIESMIVSKKKYDELSEEER SGKFATGILLHDTNKVEYCKAYKQVQEKAQAKKGGAK >gi|197325098|gb|DS990368.1| GENE 682 686955 - 687518 784 187 aa, chain + ## HITS:1 COG:jhp0539 KEGG:ns NR:ns ## COG: jhp0539 COG1014 # Protein_GI_number: 15611606 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit # Organism: Helicobacter pylori J99 # 1 184 1 184 184 249 70.0 1e-66 MRKQLRFTGVGGQGVLLAGEILAEAQIRNGGYGVKAATYTSQVRGGPTKVDILLDNEEIL YPYANDGEVEFMLSTAQISYDQFKGGLKEGATIVIEPNLVTPSDEDKKKYKIYPIPIITI AKEEVGNVVTQSVVALAITITLTKCVDRDLVYETMISKVPAKVVELNKKAFELGEKYAKE AVEKGSL >gi|197325098|gb|DS990368.1| GENE 683 687777 - 689315 1202 512 aa, chain + ## HITS:1 COG:Cj1377c KEGG:ns NR:ns ## COG: Cj1377c COG1145 # Protein_GI_number: 15792700 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Campylobacter jejuni # 25 505 57 552 553 292 34.0 9e-79 MHIERLPFGNLLLDKADINYEQKMEILNQAQEILEDFRLDSSKNLDISNQLAIFYDGEDG IPASVLGFEKQASQEFEVSLFEISSINRVNGYLGNFQAELENGEICRFSQAVMFVYDENL LRFNGFFSVADFDNPHSLMNALKQNLGEYSYKEIISYKDDFCQYHHRREKHCTKCVDACP TFGVGANDNLMELVFSPVDCIACGACVGVCPTSSLEYEELPKEGLEEIVELYQGHKVFLC NMAHYEELANQGILLDFNLTPLILPTLKILNENDLLMLLQTTQNEVIVFGESSEAIRFVN NITQQIYQRECIVVIDSPEKIHTYAKELQTFETYLYKNRYSRSHRESFAQRIQYMIKDHN FGIAKSVAPVFYGDLKIDADKCTLCLSCVGACNVNAIFAKSDDFSLRFNPSLCTTCGYCV DSCPEKIMEVSREGMRLESSYFKSRELAKDTPFLCVECGKPFSTKKSIEKIKTMLSASFS SDPKKLRTIECCADCKVKVMFQDQVAQHFAEK >gi|197325098|gb|DS990368.1| GENE 684 689325 - 689927 678 200 aa, chain + ## HITS:1 COG:no KEGG:WS1144 NR:ns ## KEGG: WS1144 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 12 198 6 196 198 112 37.0 1e-23 MLDRLSKEEQISVKNARILYYDFFYGFFVFEALGERAEVAKKQLDILKQSPLNEAIEADF LLLENEINQNEMENIKEEFSRLFALPFGGKQVGMHLSHYYESCVGGDSLLKMRGIVKKSD IRVNSKDFKETEEHLGFLFGFMRYLIEKDDEALAKEVFLYANQAFFQLVKEINEREDSKY YLALARILESFLKFEQEIYT >gi|197325098|gb|DS990368.1| GENE 685 690010 - 690204 272 64 aa, chain + ## HITS:1 COG:no KEGG:WS0732 NR:ns ## KEGG: WS0732 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 60 4 64 67 62 59.0 8e-09 MEKSRREFLKNATKTSIAVAGVSVALAGCSKKGSSENLVRGKSPKTEILYQKTKQWDMYY SVAK >gi|197325098|gb|DS990368.1| GENE 686 690218 - 690772 903 184 aa, chain + ## HITS:1 COG:Cj1511c KEGG:ns NR:ns ## COG: Cj1511c COG0243 # Protein_GI_number: 15792825 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Campylobacter jejuni # 10 184 11 180 934 236 60.0 1e-62 MSEALKRRQTRRAFLKMTALGSLAGASVALGADSQKTMRPATTQELQEKYPNSQKIKTIC THCSVGCGIVAEVVDGVWVRQEVAQDHPVSQGGHCCKGADLIDRARSETRLRYPLEKKDG KWARLKYDEAMDKIAAQLKQIREESGPDAVMFLGSAKCSNEQSYYIRKFAAFFGTNNIDH CARV >gi|197325098|gb|DS990368.1| GENE 687 690821 - 693043 2379 740 aa, chain + ## HITS:1 COG:Cj1511c KEGG:ns NR:ns ## COG: Cj1511c COG0243 # Protein_GI_number: 15792825 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Campylobacter jejuni # 1 738 198 931 934 765 51.0 0 MTNHLGDMMFSKYILIIGANPAVNHPVSMVHILRAKEKGAKLVCIDPRFTKTAAKCDEFH RIRSGTDIAFAYGLLNHIIANNLYDEKFLKERVYGYEEIIKEAQKFSPEVAADICGIPAD EIRHIAEEMAAAKPASLIWNQGLTQHTVGTSNTRIMPILQMFLGNIGKNGGGVNILRGHD NVQGASDMNNLSDSLPGYYGLGEPAWRHFCKHWGVDYEWMLGRFKNKEMMGATGFAHSTW KFGVLDEENMANNGGTKLRALVVIGSGMTTVSLLDLQKKAMDQLDLVVFVDPYVNDLAIY SDRTDNLFMLPAASQMETAGSVAATNRSYQWRSKVMEPLFECRPDEEFLFGLADRLGFLK EYQWRLYDIAKSKGRDQFIWPDDATTELTQSIRSIGLQGMSPERLKAHQENWHMFDKVTL EGTGPFKGDYYGLPWPCWSDKHPGTPVMYNDSIPVMRGGMGFRVNWGVTSPDGQSMLTER TLPNAKHQGGHAPVSAANAESLGIKLTEEEKQAVAGTTFAMGIGNNILVEKALEAGLCPY GNGKARAKVWNWYDQIPLHREPLHSVRGDLVSKYPSFPDKKNHFRANIQYISRQTEKDWV KEYPVNMLSGRLVAHMGTGAETRSAKYLAEVEGEMFVEIHPDKAAEMNIRNGDKLWIYGT NGARILVPAKISTRVDYNSIWLPQNFSGLDQGESRLENYPEGTKPYVIGESANMISSYGF DYNSACPETKCGLCRIEKAQ >gi|197325098|gb|DS990368.1| GENE 688 693053 - 693682 671 209 aa, chain + ## HITS:1 COG:Cj1510c KEGG:ns NR:ns ## COG: Cj1510c COG0437 # Protein_GI_number: 15792824 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Campylobacter jejuni # 14 207 13 207 213 268 67.0 6e-72 MSNTNQEILANFSRIKFYCDTNRCIECHGCDVACKEAHHLPVGVNRRRVVVLNEGQVGKE SAVSVACMHCADAPCAQVCPVDCFYIRADGIVLHDKKTCIGCGYCLYACPFGAPQFPKNG VFESRGAMDKCTFCAGGPEETNSEEEYRLYGQNRIAEGKVPMCASMCSTKALLAGSSEEV SNIITHRATVRGENMPNAVPNVWKTAYGN >gi|197325098|gb|DS990368.1| GENE 689 693692 - 694639 1198 315 aa, chain + ## HITS:1 COG:Cj1509c KEGG:ns NR:ns ## COG: Cj1509c COG2864 # Protein_GI_number: 15792823 # Func_class: C Energy production and conversion # Function: Cytochrome b subunit of formate dehydrogenase # Organism: Campylobacter jejuni # 70 313 37 293 310 222 47.0 7e-58 MKTYKNFFRIFVILMGFALTLWAADPSVPQEGGKQYAEVVEGNNALMHNPMNTKLYGGPE VEAIKAWGVNSPNAVGWGEIFTLLQGHYFATIFAIIIVLVPLAFLTHFIVVGQKKFSHGR KIKVFSRYNIIVHWCAAIPFVLLCLTGLIMVFGDKLGGGSFVRFARDVHGIVTILFAIFG VLMFLMWIKPALFKLYDIKWLMIMGGYLSKEKHPIPAGKFNAGQKMWFWVCTVGGFMMII SGAFMFFQFSDIETLRVMALVHNVIGFFIIALLITHIYMAVFAIEGALSSIIDGNMGEEE IAILHSYYYQEINKA >gi|197325098|gb|DS990368.1| GENE 690 694641 - 695423 796 260 aa, chain + ## HITS:1 COG:Cj1508c KEGG:ns NR:ns ## COG: Cj1508c COG1526 # Protein_GI_number: 15792822 # Func_class: C Energy production and conversion # Function: Uncharacterized protein required for formate dehydrogenase activity # Organism: Campylobacter jejuni # 21 260 19 260 260 181 41.0 2e-45 MDQFYQNLQIEQISPSGFLSTREDSVIKEERIAFYLNDQKLLSVMSIPYEQDYHFVGFLM SEGVISDLSCIDSIKIAEDGKSVSLKAKIEEKMLKNLFREKTLTSGCCVGVAGNLEGNIV TKFIESPYKITTKKIFEHLKFFETNTELFSKTGCVHKAMLVLNDKIFISEDIGRHNAIDK VMGKARMLGFNTQDSILFVSGRLSLEMVVKAVMHNIPIVVSKAAATFMGIKAAQETGVTL IGFARGEKANVYTHSGRIIG >gi|197325098|gb|DS990368.1| GENE 691 695557 - 696192 471 211 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|253827649|ref|ZP_04870534.1| ## NR: gi|253827649|ref|ZP_04870534.1| hypothetical protein HCAN_1001 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1001 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 211 1 211 211 338 100.0 1e-91 MVVILELSRYSWHFLGKILCEILQKVFDMERVFGRKEWIKNLKSQIMDLQSAGKSDKEIK KQIRGEFTRYSTTLEKIIQIIFIVLLIGFVLLGIHIGYTILLWEANLYAYNDSLWSPYVS MLIFGVVCVLLFMIFSFWFGLFMDWLVYHKILNDSLNENFYLKLLRALLVLACLGFIIFM VMVFVVGWQISEFYGMPLGRSLFETFMEIVD >gi|197325098|gb|DS990368.1| GENE 692 696192 - 697031 248 279 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 17 267 16 270 285 100 29 2e-19 MEIGVVSKLRLGRFVEFGAYLQNKGEEVLLPNKYLPKDSKIGDMIEVFLYHDSEGRVIAT TLKPKAQRGEIVVLEIVDRNHLGCFLDLGIAKDLFMPTQNPQKFSINSQVLVFITTDKQG RLIAKVNIKPYLKSLKNINKQELGIFSKVEIIPFRESNLGYECVINGEYLGLLYRSEIFE KIKFFKKREGFIKKIYPNGKCDLSLKPPLAKKDSISEAQEVLERLKESGGHLKMHYDSDP KEITKIFKMSKKSFKRALTSLIEQDKIIFKAKEGIWLKV >gi|197325098|gb|DS990368.1| GENE 693 697168 - 698277 1354 369 aa, chain + ## HITS:1 COG:no KEGG:HH1023 NR:ns ## KEGG: HH1023 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 369 1 371 371 598 77.0 1e-169 MKKNIVFFEARGGSDKGPDGYRKDTMPMVNALKAKGWNAEVIFFTDDILRDQTERNKIYE HVKNTADGYVSRVNPGNLKEEKLYFDVLRKLCDDRLVGMPHPDAMIGYGAKDALTKLADT QLVPSDTYAYYDPAEAKRIGVTWSDIHDFKKTFPKTLAKGERVLKQNRGSTGEGIWRVRL ESPNDYGKVDSLPLDTKIICTEAKDNHTEERKLGEFMDFCEHYLVGDNGMLVDMTFLPRI KEGEIRILMLYKTPVYVVHKKPAEGGDAFSATLFSGAKYRYDEPKDWQTLIDWFLAQLPE IRSKLGNYDLPLIWTADFILDTDSQGKYKYVLGEINCSCVGFTSPAEFMEKIALMVGDTI VDIVSKQKA >gi|197325098|gb|DS990368.1| GENE 694 698352 - 699269 748 305 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 1 304 1 305 308 292 51 2e-77 MKAIHSISEAIGNTPLLFIKSLSKESGANIYGKCEFFNPSGSVKDRIALNMIESAIREGK IDEDTILIEPTSGNTGIGLASVCAAKGIKLILTMPESMSIERRKLLSAFGAKLELTPAPQ GMKGAVSRALELQKEIPNSLVLQQFQNQANPEVHRKTTALEILEAMDGKIDVFVSAVGTG GTLSGVGSVLKQKNPNVKIIAVEPINSPVISGGAPGPHKIQGIGAGFIPETLDTSLIDEV LQVDAEWAAQEARKIAKNEGVLVGISSGANLWGAKEIAKKYPNANIVTILCDTGERYLST DLFEV >gi|197325098|gb|DS990368.1| GENE 695 699495 - 702044 2975 849 aa, chain + ## HITS:1 COG:HP0779 KEGG:ns NR:ns ## COG: HP0779 COG1049 # Protein_GI_number: 15645398 # Func_class: C Energy production and conversion # Function: Aconitase B # Organism: Helicobacter pylori 26695 # 3 848 5 853 853 1250 71.0 0 MSFFIEYQEQVKQRAEQNIPPLPLTKEQVIQVVELLKKGERQDELIDLLSNRVSPGVDEA AKVKAEFLNQIVQGEITINGISKVLAVKLLGTMLGGYNIAPLVAALDSKDTEVAKAASEA LKHTLLVYDSFNEIATLSKSNAYAKEVLESWANAEWFLSKEPLAEKITAVVFKVDGETNT DDLSPASDAFTRSDIPLHAQAMLKSRTQNAFGRIEELKKKGYPLVYVGDVVGTGSSRKSA CNSLVWHMGREIPYIPNKKAGGLVIGSVIAPIFFNTCEDSGCLPIVAPVSELNEGDVIEI YPFKGEICKNGAVVSKFDLRPNTLADEIRAGGRINLIIGRGLTAKAREFLGMPKEEIFAK PQTPKGSGQGFTLAQKMVGKACGVEGVLPGTYCEPRVSTVGSQDTTGAMTRDEIKELASL GFSADFVLQSFCHTAAYPKPADVKLHATLPQFMSSRGGVALRPGDGVIHSWLNRMVLPDS VGTGGDSHTRFPIGISFPAGSGLVAFAAVTGSMPLDMPESVLVRFSGKMQPGITLRDLVN AIPYYAIKQGLLTVEKKGKKNIFSGKILEIEGLPDLKVEQAFELSDASAERSAAACTVAL NKEPIIEYLKSNIALINAMIKAGYQDSTTLERRAKKMQDWIDNPVLLKADSNAQYAAVIE IDLNEITEPILACPNDPDDVATLSEILNNPNRPHNIDEVFVGSCMTNIGHYRALGEVLKG EGMVPTTLWIAPPTKMDARELTEEGYYSIFGAAGARIELPGCSLCMGNQARVRDNAVVFS TSTRNFDNRMGKDAKVYLGSAELAALCALLGRIPTKQEYLDLIPKKIQGKENQIYRYLNF NLLENWELD >gi|197325098|gb|DS990368.1| GENE 696 702355 - 703386 1379 343 aa, chain + ## HITS:1 COG:Cj0358 KEGG:ns NR:ns ## COG: Cj0358 COG1858 # Protein_GI_number: 15791726 # Func_class: P Inorganic ion transport and metabolism # Function: Cytochrome c peroxidase # Organism: Campylobacter jejuni # 8 343 7 341 341 552 80.0 1e-157 MEKWFLSLSSVLVACSLTLNANPLIQSAKDNGLAPLPKNQKEVDKVLQEMGVKFSPFTEA KAELGKKLYFEPRLSKSGIISCNTCHNLGLGGTDGISAAVGHRWTENPHHLNSPTVYNSV LNASQFWDGRAGTLADQAKGPIEAEPEMATPAKLAVEKIASLPEYVNEFKKIYGKDGVTF DNIADAIANFERTLITPSRFDKFLEGDSKALTKAEQEGLQVFLDKGCAACHNGVNLGGTM QAFQVAGQYKFANLGDFKGDSNGMVKTPTLRNVAETAPYFHNGAIWSLNDAIQEMGSVQL GIEISQAEAEKIATFLRSLTGEKPEVIYPQLPISTDKTPKPEL >gi|197325098|gb|DS990368.1| GENE 697 703413 - 703892 593 159 aa, chain - ## HITS:1 COG:jhp1334 KEGG:ns NR:ns ## COG: jhp1334 COG0652 # Protein_GI_number: 15612399 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Helicobacter pylori J99 # 3 152 4 153 162 202 64.0 3e-52 MELKEFNLSKEELESLQNAIIHTEKGDIKVKLFPNEAPNTTANFATLAKSGFYNGLNFHR VIAGFVAQGGCPNGDGRGGPGYAIKCELQNNPHKHLKGTLSMAHAGRNTGGSQFFICFAP QPHLDGEHTVFGQIEDEESLKVLDSIKQGDKILKIEINQ >gi|197325098|gb|DS990368.1| GENE 698 703986 - 704669 654 227 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|253827656|ref|ZP_04870541.1| ## NR: gi|253827656|ref|ZP_04870541.1| hypothetical protein HCAN_1008 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1008 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 227 1 227 227 420 100.0 1e-116 MFKILLSLLWALSLYAQSPKWLDSGLKIVSSFGLQDYKEGYGLIINEGLIITSASLVYRD ARAKDILLYDSQSPSHVVSCLSYAEILALDANLDLAILKPQKFTDIYCNILPEPNLRALN FKEKSFDIFNDSYLNILDYQLKVEYFFEQEWSNFASEQTTLEAIENLPWDQKQKMIGMPL FVENKFVGILRNEGDILKGQEILKFICKIHQTTSILDSYFISQEYCQ >gi|197325098|gb|DS990368.1| GENE 699 704752 - 707247 3189 831 aa, chain + ## HITS:1 COG:HP0701 KEGG:ns NR:ns ## COG: HP0701 COG0188 # Protein_GI_number: 15645324 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Helicobacter pylori 26695 # 7 811 10 813 827 1082 70.0 0 MSDLLNQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTS KAKYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAA MRYTEAKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMA TNIPPHRIDEIIDALVYLIDHPKAELNEILQFIEGPDFPTGGIIYGKNGIKEAYETGRGR IKIRAKTHIEKTKTKDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGIAEVRDESDRDGI RVVVELKREAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKIFTLLELLALFISHRKSV VIRRTIFELEKAKARAHILEGLRIALENIDEIVALIRSSSDPKVAKEGLIEKFNLSEIQA QAILDMRLQRLTGLERDKIENEYQELIKEIEYLSSILRSEELLNKIIKEELLEVKEKFST KRLTAIEEDYESIDVEDLIPNEAVVVTMSHRGYVKRVPVRTYEKQNRGGKGKISANTHDD DFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIGKAVVNLISLAPDEKIMATI TTKDFNEDKSIAFFTKNGIIKRTNLSEFKNIRSVGVKAINLDGDDELVTAKIIHPEIQQI LVVTYEGMCVRFGVDNVREIGRVARGVTAIKFKIPKDYVIGATVVSSENEEILSVSEKGI GKRTEVNEYRITNRGGKGVIAMKLTSKTGKLVGVVNVDENMDLMVLTSSGKMIRVDMQTI RKAGRATSGVIIVNVDDDKVVSIARCPKEEKEIEEDLPEEDNGLLEFNNEE >gi|197325098|gb|DS990368.1| GENE 700 707247 - 707657 395 136 aa, chain + ## HITS:1 COG:no KEGG:WS0366 NR:ns ## KEGG: WS0366 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 17 126 34 142 149 70 34.0 2e-11 MYKVFFGIMICSIFVGATEYLFSYRVAIKNGIILNEKYYFSPAMLSANLLDKVKNPYKKC EIVHNSKSEKEFLDSSKEEILECFFKWGVKLEDRSKASNYQGEFVSFLSIPATRIKIEYE RGIATIYHLVANKKEK >gi|197325098|gb|DS990368.1| GENE 701 707657 - 708955 1467 432 aa, chain + ## HITS:1 COG:Cj1024c KEGG:ns NR:ns ## COG: Cj1024c COG2204 # Protein_GI_number: 15792351 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Campylobacter jejuni # 1 430 1 430 433 474 60.0 1e-133 MKLAIVEDDINMRKSLEIALGEYEEFEVVSFKNAKDALKKLDDSIDLIITDINMPQMDGI EFLRELNGRYEALIITGNATLNKAIDSIRLGVKDFLTKPFDIETLVAAIHRAKKAKEVIA KTPKKSEETKEQSFISTSPALQKALMLANKAAKTDAAILLLGESGVGKEVFANYIHNHSL RAKAPFIAINMAAIPDNLLESELFGYEKGAFTDATEGRAGKFESANGGSVFLDEIGEMPA SLQAKLLRVLQEKEIVRLGSSKPIKVDIRFIAATNADIQKKIKKGEFREDLFFRLQTIPI HIPPLRERTEEIIPLCEWKLEEVDKQYGVGKKKWGKGAKEQLLSYKWPGNIRELLSVVER AAILCEDDTIMPEDLFLSSRESGGAKKIANLEEELIYEALKASDSDVDSAAELLGMQKQV LLEKMKHYHINF >gi|197325098|gb|DS990368.1| GENE 702 708966 - 709991 1376 341 aa, chain + ## HITS:1 COG:Cj1023c KEGG:ns NR:ns ## COG: Cj1023c COG0136 # Protein_GI_number: 15792350 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Campylobacter jejuni # 2 340 3 341 343 484 70.0 1e-136 MKKFNVAVVGATGAVGEEIFKILEERNFPINKLVPLASARSVGREITYKDEVYKVKELTH SVFEEEEIEIAFFSAGGSVSAEFAPSAAKAGAVVIDNTSHFRMQKDVPLVVPEVNPQDIA LWEKTGIIANPNCSTIQMVQVLAPLHNAFKIKRVDVSTYQAVSGAGKKGMEELVLQMQKF FEFNMDLVEPKAFPHRIALNLIPHIDVFLDNDYTKEEMKMVNETNKIMHSDFAVSATCVR VPVLRSHSESITIAFEQEVSAEEAREVLSKAESVVVIDNPKEKSYPMPSLATDTDETYVG RIRVDNYDKKILHLWCVADQIRVGAATNAVRIAQKWAEMQK >gi|197325098|gb|DS990368.1| GENE 703 710005 - 710463 600 152 aa, chain + ## HITS:1 COG:mll4349 KEGG:ns NR:ns ## COG: mll4349 COG0394 # Protein_GI_number: 13473673 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Mesorhizobium loti # 1 146 3 150 170 121 42.0 5e-28 MQKVHSILFVCLGNICRSPLAEGIARHLAQKEGLNLKIDSAGTSGWHIDEPPCAYSIAIA KKYGIDISQLKGRKVNVYKDDSFDYIVAMDRQNYQDLLTMGFEKEKVKLMGDFGLEGQEI PDPYYYKNLEGFEKIFSMLEVAIKALYSTIKD >gi|197325098|gb|DS990368.1| GENE 704 710467 - 710793 456 108 aa, chain - ## HITS:1 COG:no KEGG:HMU00530 NR:ns ## KEGG: HMU00530 # Name: not_defined # Def: thiosulfate sulfurtransferase GlpE # Organism: H.mustelae # Pathway: not_defined # 24 106 1 83 85 71 38.0 8e-12 MYIKHKSLATPIDLQNDKLDNCIIIDLRSRGYFLISHIPNALNLDSLSRISFIAQENPDK RIVLYCHSGASAADFGNKLVEMGYKNIFYLDENFFNLPKMGITIQYNT >gi|197325098|gb|DS990368.1| GENE 705 710830 - 711525 748 231 aa, chain + ## HITS:1 COG:jhp1145 KEGG:ns NR:ns ## COG: jhp1145 COG1587 # Protein_GI_number: 15612210 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III synthase # Organism: Helicobacter pylori J99 # 35 198 28 198 223 98 35.0 8e-21 MRKVYYITKKNTNRLIKEVEYLELLEICFVEDSMLKQKIKEVECLLFTSKNAVFALEHFM PKEWQNLPCYVIGEGSKKALESLGGKVEFVASAAYGDLFGRELVEILRGKKVLFVRAKKV ASNLVEILKKGGIVVLESILYETKILNISEDKKQSFKEDSIFFFSAPSSLRAFLQNYAWR ESYLALCIGKSTAKVAEELLGKNAKISLSPKINIKDSLEFAKQLARENNNE >gi|197325098|gb|DS990368.1| GENE 706 711518 - 712870 1455 450 aa, chain + ## HITS:1 COG:HP1184 KEGG:ns NR:ns ## COG: HP1184 COG0534 # Protein_GI_number: 15645798 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Helicobacter pylori 26695 # 1 447 3 447 459 389 49.0 1e-108 MSKIDLKTAAIPRLFFTYFLPSLVAMLALSTYSTIDGIFVGKKLGENALAAIGVAWPIFP ILIAFELLFSVGAAAMSSYFLGKGKPFRARIIFSSVFYFALFTSLVGGIILYCFSDAIAL YLGASETLLPLVRDYTEIIYLGAFIIVLHPMLDIFAINDKQPILAMIAMIIGSLMNIVLN YLFLFILELGIHSSALATILGHGIGMCILLQHFLRKKGDLFLIKTFDIYAILMATKNGIP QSSSEISVSMMMLIFNHTIVGIAGDRGLAIYSVLMYVGIIPFTILLSMAQGVQPIASFNY GAKLLGRVKGIFYFGLGFSLLGGVALYIGFYYLSPLIIPWFLQDDIVLRDSNLINDIKWA MDIYFLGYILLGINIVSAIFFQSIQRTASSFIITFSYTLLFALFFVLILPKFYGFMGVII SYPLGILCASFVSLAVIFYEQRSGVLTIKN >gi|197325098|gb|DS990368.1| GENE 707 713006 - 714412 2056 468 aa, chain + ## HITS:1 COG:Cj0087 KEGG:ns NR:ns ## COG: Cj0087 COG1027 # Protein_GI_number: 15791475 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Campylobacter jejuni # 1 468 1 468 468 608 62.0 1e-174 MATRKEHDFIGELEIPEDVYYGVQTYRAVDNFHMTQRKLRDYPFFIKAFAQVKKAAALAN KEVGVLDADKADALAAACDRLIAGEFIEQFVVDMIQGGAGTSTNMNVNEVLTNIALESMG HKKGEYQYLHPNDHTNLGQSTNDTYPSSIKVATHKKLGDLLEAMEELKEELLKKAEEYKD YIKMGRTELEDAVPTTLGNTFNAFASYIKSDIAKLKAAREVMEVLNLGATAIGTGINCHP DYKNVVEKRLKEITGVNFRPAEDLIAATQDTADFVYVSGCLKTAAVRLSKIANDLRLMNS GPRCGLGEINLPKMQPGSSIMPGKVNPVICEAVGEACYEVIGNDVTIMLCSERGEFELNA FEPGIAYALFNSLVVLENAMRTLAQKAIKHLSANPEACKQSVLNSIGIVTAFNPILGYEK SASIAKEALQTGKSVGDICLERGYLPKEEIDKILDPKNMLNPQMKAKK >gi|197325098|gb|DS990368.1| GENE 708 714422 - 715768 1922 448 aa, chain + ## HITS:1 COG:Cj0088 KEGG:ns NR:ns ## COG: Cj0088 COG2704 # Protein_GI_number: 15791476 # Func_class: R General function prediction only # Function: Anaerobic C4-dicarboxylate transporter # Organism: Campylobacter jejuni # 4 443 3 439 445 499 71.0 1e-141 METIMLILQIIVLLGAIFVGIRLGGIGIGYAGGIGVVILGLGLGMTPGSIPWDVILIIMS VIAAISAMQLAGGLDYLVQIAEKILRSNPKYINYLAPSVTYFLTILAGTGHTAFSMIPVI VEVAKEQNIKPSAPLSIAVVSSQIAITASPVSAAVVYMTGVLEPLGWSYPVLLGIWIPTT FIGCMLTAFIMTMFYNLDLSKDPVYQERLAQGLVQAPIGSQNIQLKEGAKLSVGIFIIGV LCVVLYATAISKIGGQPVLIENVIVSRDAAIMSFMLGIATLIVIFCKVKPDKISDTSVFK SGMVACVCVLGVAWLGNTFVGGYTKEIGDLSTELVSKIPALLAVAYFFASMLLYSQAATA KAITPVVVAALGITVANPGDSYMLVASFAAVSALFVLPTYPTLLGAVQMDDTGSTRIGKY IFNHAFLIPGVLAIAFSVVLGFLAVSLF >gi|197325098|gb|DS990368.1| GENE 709 715812 - 716552 725 246 aa, chain - ## HITS:1 COG:CC0877 KEGG:ns NR:ns ## COG: CC0877 COG0501 # Protein_GI_number: 16125130 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Caulobacter vibrioides # 27 245 29 247 251 171 41.0 1e-42 MSIFKKIYFAILALMLCACSSTIYTNRTQLMLLNEEQEKVLGEQSALAVLKESKLSQNAK QAAMVKRVGQKIASVANRPDFEWEFYLIENKTQNAFCLPGGKVFVYTGLMELVSSDDELA VVISHEIGHTILRHGAERMSMQTLQQLGSSLLEIFVSTQNPEYNNLFNKAYNIGSNVGIM LPFSRHHELEADKVGIILMQKAGYNPQAALSFWQKMSQGNKETSDFFSTHPSDSKRIQEI EKILAE >gi|197325098|gb|DS990368.1| GENE 710 716573 - 718375 2092 600 aa, chain - ## HITS:1 COG:HP0355 KEGG:ns NR:ns ## COG: HP0355 COG0481 # Protein_GI_number: 15644983 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Helicobacter pylori 26695 # 2 600 4 602 602 936 77.0 0 MKDSLSKIRNFSIIAHIDHGKSTLADCLIQACGAISEREMSAQVMDTMDIEKERGITIKA QSVRLKYFYKGEPYILNLIDTPGHVDFSYEVSRSLASCEGALLVVDASQGVEAQTIANVY IALENNLEIIPILNKIDLPAAAPERVKSEIEQTIGLDCSHALEVSAKANIGITELLDKII ELIPPPQGDLEAPTKALIYDSWFDNYLGALALVRVFDGSIKVGQNIYIMGSGKNHEVLGL FYPHPIKQEKTKSIQCGEVGIVVLGLKNVTDIAVGDTITDFKNKTKEPIAGFEPAKPFVF AGIYPIDTDKFEDLRDALEKLKLNDSSLNFEPETSVALGFGFRVGFLGLLHMEVIKERLE REFGLDLIATAPTVVYEVTQTDGEVIMIQNPSELPPEQKIASIKEPYVKATIIVPSEFLG NIITLVSKRRGIQKKMEYLQETRVLLEYHIPTNEIVMDFYDKLKSCTKGYASFDYEPIGY QEGDLVKLDIRVAGEIVDALSIIVPKSKAYEKGKELVEAMKEIIPRQLFEVAIQASVGNK IIARETVKSMGKNVTAKCYGGDITRKRKLLEKQKEGKKRMKAIGKVNLPQEAFLAVLKID >gi|197325098|gb|DS990368.1| GENE 711 718548 - 719381 903 277 aa, chain + ## HITS:1 COG:HP1435 KEGG:ns NR:ns ## COG: HP1435 COG0616 # Protein_GI_number: 15646044 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Periplasmic serine proteases (ClpP class) # Organism: Helicobacter pylori 26695 # 2 252 22 272 292 235 48.0 5e-62 MKYFKALVFLLIVVLIFMPSSSENSSLANVARIDLKGMIIQSDSFLEELSKLENNPNIKG VLLVIDSPGGTIPPSVEISEAVKRMRSKKPIVAYAQGSMASGSYLAGVWADRIIANKGAL VGSIGVILNGVDVSELAEKLGIKTQILKAGIYKEAGTFMRPWNQAEEEMLKGLIKEQYEM FVSEVVAARNLEITKEGEFAQGRVFSASNALKLGLVDSISSIYEAQKTLFELAKIQNPIW LQKSEMEMYLEKIIGENIALGIQKGIYGISLEWLKGH >gi|197325098|gb|DS990368.1| GENE 712 719381 - 720214 881 277 aa, chain + ## HITS:1 COG:Cj0790 KEGG:ns NR:ns ## COG: Cj0790 COG0788 # Protein_GI_number: 15792128 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate hydrolase # Organism: Campylobacter jejuni # 1 277 1 274 274 308 57.0 9e-84 MRFVLKIQTPDKKGLITQITQIIFQFNLNILKNDEFVDKENNLFFMRSEIEGECEIAILK QKIKAIINDESSQVEILPCQKKKIVILCTKESHCLGDLLIRYDSNELNADILAVISNYEV LKPLCQKFRLPFICISHEGKSREDHEKQIIEVLKQYPSDYIILAKYMRILSPNFVQEFEG QLINIHHSFLPAFVGANPYKQAYERGVKIIGATAHFVNNELDEGPIIYQDITKVNHTMDW KEMQKHGRDVEKIVLSKALNLALEEKIFVYHNKTIVF >gi|197325098|gb|DS990368.1| GENE 713 720277 - 721122 733 281 aa, chain + ## HITS:1 COG:Cj1544c KEGG:ns NR:ns ## COG: Cj1544c COG0697 # Protein_GI_number: 15792852 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Campylobacter jejuni # 1 278 15 297 298 216 50.0 4e-56 MAFWGSSWACGKILVQYASADIVAFWRFFFALVASIPLIILLKVPMRINTENFKFLLIAA CLNGIYSILFFMGLNYGSAGKGGVLVTTLIPIFAYLLAYFFSHKENKSIKANEILGLGIG IISGICLLDLGSFQELFGKFNTFFLLCALNWAILTLVCQKIRIHPLAINFYITFLSLLFY SPLFLFKPQIIEVFHYDMQFWVMIFVVAVLSTAIGTSIYYMGIAKLGATKASSYQLLVPA MALGSSYLILGEIPSLLTIFGGILAIFATYLINIYKPKEIG >gi|197325098|gb|DS990368.1| GENE 714 721137 - 721595 473 152 aa, chain - ## HITS:1 COG:Cj1666c KEGG:ns NR:ns ## COG: Cj1666c COG3019 # Protein_GI_number: 15792970 # Func_class: R General function prediction only # Function: Predicted metal-binding protein # Organism: Campylobacter jejuni # 19 145 17 142 145 163 59.0 1e-40 MKNKKLLFLALLTPLYLLSKEVEIYSSPFCGCCIKWGDYLQNNGYQVTHHKNGDFMAVKE KYKIAPQNQSCHTGIIEGYAIEGHVPLDAINWLLENKPENVVGISTPGMPIGSPGMEQGN MQEEYPVVLLYKNGDSKVFGIYKGETLIKKQL >gi|197325098|gb|DS990368.1| GENE 715 721876 - 722937 1442 353 aa, chain + ## HITS:1 COG:jhp0617 KEGG:ns NR:ns ## COG: jhp0617 COG0582 # Protein_GI_number: 15611684 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Helicobacter pylori J99 # 1 352 1 352 356 351 52.0 1e-96 MRYPIDFKDDFAENLLFWIERFVYSKLNSLSNHQVQNKKDIIMPLNFLRKGVKSIQEIQE ICKQCRNAGLIGINTYIIPLLKLYEYLNYLGLASLKEVDEEMLKEFLTINTSSLSDATKK NYRVALINFFGFIDKQNEDDDGTSYIFRIELKNWGGLRGKSGQKLPSYMIEEEVQRFLKG IDTYPFKHQDLGARNRLLLKVIIYTGIRVGESLNLKIKDITLDGDFYVIQVRGKGNKPRV VMIKAKNISNDFSLWINSRPNEVENDLLFCNHKGKKLTQAYVSRIVEQVLLTNGIRKEKN GAHMLRHSFATLLYQKSQDLVLVQEALGHASVETSRIYTHFDKQKLKATTEIM >gi|197325098|gb|DS990368.1| GENE 716 722967 - 724091 970 374 aa, chain - ## HITS:1 COG:no KEGG:Ctha_0023 NR:ns ## KEGG: Ctha_0023 # Name: not_defined # Def: KWG repeat protein # Organism: C.thalassium # Pathway: not_defined # 162 374 73 295 365 179 39.0 2e-43 MLICSRCHTRNLDIANFCKECGSNDLYDPQAEEKREKERQRQEELKRAEEERQRIQEAKR QKAREERERRIKQTKKFFKQNKYKFLISGFVLVLAILVSLYQYYYGGKYSRVYMSNLEKQ CYTNDEKSCEMLRNIYKEKCDGGDKGACLNAFIHNHKDLKAIKVNDNWNLINENNETIAN ITDLMQSYAKIKLNGKYGFIDKSGKIVIKPRFWAFHGQLIAVELNKKWGVISKNGKFAIK PQFDSAQSFDEGLAKVELNGKWGLIDKNGKFIIEPKFDWIEDFSEGLAKVELNGKYGLID KSGKIVIKPQFDDVWDFSEGLARVELNGKYGLIDKNGKIILEPQFDEIGDFTPIGIQING KWGTIDENGKFIVE >gi|197325098|gb|DS990368.1| GENE 717 724091 - 724708 460 205 aa, chain - ## HITS:1 COG:STM0094 KEGG:ns NR:ns ## COG: STM0094 COG1076 # Protein_GI_number: 16763484 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-domain-containing proteins 1 # Organism: Salmonella typhimurium LT2 # 18 204 81 268 270 73 28.0 2e-13 MAKLDNASISRDLSRFISSLLDKIDLFYSKDYGDFRSSYAEVFALEKSGGRSISKLCSCM RISSQQEVDFLICILLDLAYFDKQMSDSENTLIESIIIGLGLNLIVFRELKIKYEQIYHF TSKEQNRQKQENDSKMTLKQAYEILKSREYDDFETIKKNYRKLAREYHYDNLYSKELPPE LLKIAQEMMKKINLAYEIIKEARGV >gi|197325098|gb|DS990368.1| GENE 718 725059 - 727185 2537 708 aa, chain - ## HITS:1 COG:jhp0844 KEGG:ns NR:ns ## COG: jhp0844 COG1749 # Protein_GI_number: 15611911 # Func_class: N Cell motility # Function: Flagellar hook protein FlgE # Organism: Helicobacter pylori J99 # 1 282 58 342 605 202 41.0 2e-51 MANDYNYGVTIGSNAINTNDGTYVNADGDFNVAYSGKGWFVVGLNKNGAFDITNPDYTGA QQNYFTRDGSFSLDGEGYLVNSSGYYMYGINLGKIAADGTLTGANNLEQDYDNLGGSVLE PIQIPKEMHYQPTLTTQVNLAVNLNRTQNAQGITALQDENGNFSMEKFLALDMNSLMDSS GKLIDAKNYKDITFSVEQNGETKNYTFTYGAEGENGFKTTGELITLIKERTGLDLALKLD SLGNPSDCSLYLSNNTMQEMTLSISGRLAQKLGLSTNNETLESAFQSQVETFTENTNYPN GAYVNYGGIIFQKNGEGQDAGNPIDNPESWTLVDSTKVANYKENSEYNEGDFIVYEGKIY QRSNEPITMVEDPETGELIAQNPAEDTIGWKEIGENSRGMITEYEAGTTYEENAMVTLNG ILYQKTNGAGDTNPLEDASGWRILMTDSLDSTQLNVATYETNTEVYSDSGEKFILKSQYI LLEQGDQTATPPINERWEVKSAIYDNTGKTMISENPVFSEISFNADGTPNAEPFEVAFQN GSIQVNLAQSDDGKFSSNFAYTDSALKSATQDGTSSGIMNDIVINEDGIILVNFTNGKVE PIGRIGIAAFVNDQGLSKVGGNLFKMNAMTINGETSVVSGPPLLAWEETGNASLKYGQVL DHMLETSNVDTGTALTDLIVYQRGYQMSAKSITTADQLMQEAIQLKRS >gi|197325098|gb|DS990368.1| GENE 719 727356 - 727475 120 39 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253827676|ref|ZP_04870561.1| ## NR: gi|253827676|ref|ZP_04870561.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491] flagellar hook protein [Helicobacter canadensis MIT 98-5491] # 1 36 1 36 765 65 100.0 1e-09 MVGSLYSGISGIKTHQTGIDVTSNNIANVNTTGFRALAS >gi|197325098|gb|DS990368.1| GENE 720 727486 - 728556 1716 356 aa, chain - ## HITS:1 COG:HP0907 KEGG:ns NR:ns ## COG: HP0907 COG1843 # Protein_GI_number: 15645523 # Func_class: N Cell motility # Function: Flagellar hook capping protein # Organism: Helicobacter pylori 26695 # 103 356 26 270 301 189 45.0 8e-48 MTISSSNNYLNYTSDATARTAQTKTGENDTIENNTSSNTSTDTSTDNSTSTDNSTNNSTG STNNSSGSTDSNNSNTSSNSGTGSTGGVFPGDTPIAEEEDDNNGLGTEAFMKLFLEQLKN QDPTAPMETQEILTQTAQLTQVEAQTQMKNAMEQMTTTMQSMQETNEKTIEAQEKLIETQ EKMLETMGVLAGSIQDSSILGGYNTVGMIGNIAETPYTALNVEKNEAIKFELYFDEPIDP TKGQPKITITDKDNNVIREIDLAQKDENGNYIYLNKEGYVEFEWDTRDSKGAYVGKGDYV VKAEYNLDPNTNQYKETQLGRGEVQSILFDSGVPYVKLGDHLTVPIIYVTSYYKKD >gi|197325098|gb|DS990368.1| GENE 721 728569 - 730488 1761 639 aa, chain - ## HITS:1 COG:no KEGG:HH0185 NR:ns ## KEGG: HH0185 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 418 614 197 387 411 76 38.0 3e-12 MIPIIETEKNNQTNLLSKHSKGEEGKGDFAELFGLLTQNTQEIESPHNKISKTTNKKESK ESLNLESKENLDLKTDLKMNKKNDKNGDFSFNINQESNLKNEEKKSLKTTQILNPKNPKE LLEFTKAQNIQSSTKTLKDITQIANKLQLNLQKISIIKDEAQKEISIKNITNQQETQILQ KSTKTLSNKQADNLLNMILQDKELLSKASKKSESNQNLKNKEILESKDIPLTKIQNSKIA KMGDEILEKEISSKTSKKLETKETNQALNTKETLKKDNIKPEIKNSHKFKENEIPVSSNK TDNPSKTLETKEMPIKDNIKQENIINIKKENLKEEMKDKNQIKNFSQKTITEEKQTQEIR SEIKKENSSAQDKQTKNKKDPFSKKTTKESLETISIKQQKKTTQDLNNKDILMKEEVKQE NVSSLNANLTNISNEESQKSQNFLENLLKIEIPQKTKNIKYEDLEKETKEKKTNKTHQEI YQSSVQNQNNLLLSPRETFAHFSDKLREALQNYKPPITKISLELNPESLGSVELTITKIG DKINVQIGSNQNALQLFMQNMQDFKNQLNNVGFSEVTMDFKDTGGNSFSQNNGGNFSDSR QQNSHQQQKRNENGLQIYQQAEETNREISHLDLSFSYYA >gi|197325098|gb|DS990368.1| GENE 722 730658 - 732457 2676 599 aa, chain + ## HITS:1 COG:jhp0432 KEGG:ns NR:ns ## COG: jhp0432 COG1217 # Protein_GI_number: 15611499 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Helicobacter pylori J99 # 1 599 1 599 599 1006 84.0 0 MQEIRNIAVIAHVDHGKTTLVDGLLRQSGTFASHEQIDERVMDSNDIEKERGITILSKNT AIRYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALALGI CPIVVVNKIDKPAAQPDRVIDEVFDLFAAMGANEKQLDFPVVYAAARDGYAIKNLEDEKK DLGPLFDAILEHVPLPSGNKENPLQIQIFTLDYDNYVGKIGIARIFNGKVKKGENVMLAK SNGEKITGKITKLIGFYGLARTEIDEAQAGDIVALAGFHSVNVGDSIVDPNNPIPLDPMH LEEPTMSVNFAVNDSPFAGLEGKHVTANKLKERLEKEMQTNIAMKVEELGEGKFKVSGRG ELQITILAENLRREDFEFSISRPEVIIKEIDGQKCEPFESLVIDTPQDYSGSVIEKLGRR KAELKAMNPMGEGYTRLEFEIPARGLIGYRSEFLTDTKGEGVMNNSFLEFRPFSGNVETR NNGALISMENGEATPFSLGNIQERGVLFIPPQTKVYVGMIIGEHSRENDLDVNPVKAKHL TNMRASGSDDAIKLTPPRDLNLERALEWIEEDEILEVTPKNIRIRKKVLDPTQRKRKNK >gi|197325098|gb|DS990368.1| GENE 723 732483 - 734855 2598 790 aa, chain + ## HITS:1 COG:HP0680 KEGG:ns NR:ns ## COG: HP0680 COG0209 # Protein_GI_number: 15645304 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Helicobacter pylori 26695 # 1 790 1 788 788 1204 72.0 0 MLTVIKRDGRIEPLDVTKIQKYTRDSVVGLEGVSQSELEVDAKLHFRDKITTEEIQQTLI KTAVDKIDIDCPNWTFVAARLFLYDLYHRVNGFNGYKSLKEYLEIGEKENRIIKGMKEKF NLEKLNLKIDPKRDLQFTYLGIKTLYDRYLLKDKKGQPIELPQHMFMAIAMFLAQNEKDP TYWAEQFYDLLSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIEGIFDSYKEMALLSK YGGGIGWDFSKIRGLGSFIDGHKNAAGGVIPFLKITNDIAIAVDQLGTRKGAIAVYLEPW HSDIFDFVDIKKNSGEERRRAHDLFPALWIPDLFMKRVAEDGLWNLFDALTCADLTNLYG EAFEKRYKEYENNPDIPKETIKAKDLWKRILTSYFEVGSPFLCFKDNANRANPNSHTGII RSSNLCTEIFQNTEPNKCFIRVEFEDGTIEDYEEYQEVKTDCGIIKSSNKITSTDSINGK KVFIAQRESIDGKTAVCNLASINLSKINTKEDIERVVPVAIRMLDNVIDLNFYPNRKVKV TNLDTRAIGLGVMGEAQMLAENKIQWGSQKHLEKIDEIMEMISYNAISASCKLAQEKGVY NDFANSSWSKGIFPIDKANSEAKALVDRGGLFGFVYDWDSLREEVKTKGIRNGYLMAIAP TSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNLSLENWNYYTSAYEIDQTLIIKA AAIRQKWIDQGQSTNIFISLDKASGRYLNDIYSLAWRLGLKSTYYLRSQSVEAENTTSAI DRSIECEGCQ >gi|197325098|gb|DS990368.1| GENE 724 735226 - 736365 987 379 aa, chain + ## HITS:1 COG:BH2629 KEGG:ns NR:ns ## COG: BH2629 COG1875 # Protein_GI_number: 15615192 # Func_class: T Signal transduction mechanisms # Function: Predicted ATPase related to phosphate starvation-inducible protein PhoH # Organism: Bacillus halodurans # 143 376 227 440 442 108 31.0 1e-23 MSNNIKIPLHIIHRPKYKTYALDYGLNDARILEIARDYNLILLTNDISLKVYAISNNLIS QSLMRDRIENPQAINFLHSFKAHKNSIKDSLEKDSNFAMLKNWSLFEITEEDNTDSSLYE TGKRHYGVKLNNEFVELNFDKILEDKLYINPINLEQKFLYSLLTHPKNKVTICSGATGSG KTLIALQAGLHLLKKGEVNGIVYMRNTITANDKEAELGFRKGDEGQKLNYFMYPLFSAIN FMITKMQKESLAKRIEYKGNANSILNKEATEYFIQKHNIEVMDIAHLRGTSIAKKFVIFD ETQNASNATIKLVGTRMGEDSRIVFLGDPAQIDHPYLSKYRNGLVSLLNKAKHSDFLAGI ILKQTIRSEIAAWFEDNFK >gi|197325098|gb|DS990368.1| GENE 725 736358 - 737608 1275 416 aa, chain - ## HITS:1 COG:jhp0243 KEGG:ns NR:ns ## COG: jhp0243 COG1570 # Protein_GI_number: 15611313 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Helicobacter pylori J99 # 1 369 1 365 420 311 47.0 2e-84 MQTLSVSELNSQIKGLLEATFLQVSVCGEVSNCTYHSSGHIYFSLKDKDSTLKCVMFRGN ARYLKFKIEDGMDLILNGGITLFIPRGEYQLNCLSAIPSGVGELTLAYEQLKKEYEKKGY FLNKKPLPKFPKRVGLITSKSGAVLHDMLRVAQKRWNLVEFILFDTLVQGEGAKENIAKN IQMADSLNLDCLILARGGGSLEDLWAFNEPLVIEAIFLAKTPIVSAIGHEPDVVLSDFVA DLRAPTPSAAMEILLPDKIEWLMRLDSMQKTMENKIQNLLEKKNKKLEYLEVLLQKNSFF EKIKNHKQQLLTLQKFLTQAIESKIIPHRYTLESTPLILEQKITKILANKINQIALLKAK LESKNPQNNQKTGYVYASFQGKPVLKLSEITPNCLLTLEDLSASVQVQVLDKKLIT >gi|197325098|gb|DS990368.1| GENE 726 737608 - 739398 1955 596 aa, chain - ## HITS:1 COG:PA5435_1 KEGG:ns NR:ns ## COG: PA5435_1 COG5016 # Protein_GI_number: 15600628 # Func_class: C Energy production and conversion # Function: Pyruvate/oxaloacetate carboxyltransferase # Organism: Pseudomonas aeruginosa # 4 450 12 457 476 518 56.0 1e-146 MIKITENSLRDGHQSLLATRMRTEDMIEAAKIFEQIGFYSVEVWGGATYDTCLRYLKEDP FERLATFKEIFKTTPIQMLLRGQNLIGYRHYADDVVCEFIKLSVQNGVDIFRIFDALNDI RNLKTSIEEVKKQGKHAQGAICYTTSPVHTIANFVEFGKELAKMGCDSLAIKDMAGLLTP NMAYELTKSLKEEIGLPLALHTHSTAGFAFGSHLKAIEAGIDIVDLSNSALAEGTSHPCT QSMVATLKDTQWDSNLDLSLMEKAAEILKKNRKKYKKFESPYNQIDTRVLVNQIPGGMIS NMANQLKEQNALDKMDEVLSEIPNVRKDFGYPPLVTPSSQIVGTQAVLNVLTQTRYKTLT TESKNIIKGYYGKTPAPISQELIQKIKAEGEEIITQRPADKLLPEMTKAIEESKGFAKSP TDIISYAIFGSIAKTFLEERNQGCLAPEALSTFENENSPMPKDFMINLHGESYHIKVEGS GSKDEEVRPFFVRVNGDLREVFVTSNEINTERKINKNTDSLPQASLPGHIISPMPGNLTK LKVKVGDIIKEGDIVAIVEAMKMENQVLATKGGKIKEIYAKEGQQIDANLAIMLVE >gi|197325098|gb|DS990368.1| GENE 727 739553 - 740233 1087 226 aa, chain - ## HITS:1 COG:no KEGG:Sulku_1189 NR:ns ## KEGG: Sulku_1189 # Name: not_defined # Def: hypothetical protein # Organism: S.kujiense # Pathway: not_defined # 71 174 39 142 174 121 68.0 2e-26 MQIGNFSFYSQDNFNAWKEKTHISQDLETNSFSQDDSSIQTTEDNQEKQEEDKNTQIVNG KELETDEVQYVRELESIDRNVKAHEAAHIAAGAGVVSGGASYGYTRGPDGKMYATSGEVP ISMKKGKTPEETIQNARQIVAAAMAPADPSPQDYKVAASAMQMESQARTEQAQEQAQKNE ETFKKQEEQEQQDQEKPFFDDSKRQYALQTYTQNQTSYQPKIEIAG >gi|197325098|gb|DS990368.1| GENE 728 740254 - 742815 3401 853 aa, chain - ## HITS:1 COG:Cj0506 KEGG:ns NR:ns ## COG: Cj0506 COG0013 # Protein_GI_number: 15791868 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Campylobacter jejuni # 4 852 2 842 842 1022 62.0 0 MKKDVRALFLEFFQSKGHKIYESMPLVPDDPTLLFTNAGMVQFKDIFTGKVPTPSPNIAT SAQLCIRAGGKHNDLENVGYTSRHHTLFEMLGNFSFGAYFKKEAIAYAWEFVTEVLGFSK EVLYVTIHESDDEAFELWKEHIDSNRIKRMGDKDNFWQMGDTGPCGPCSEIFVDQGAEKF NGPEDYFGGDGDRFLEIWNLVFMQYERDIEGNLKPLPKPSIDTGMGLERVMALLEGKSSN FDSSLFMPLIAKVEEIVGQKYFYESGASFRVIADHARAVAFLLAQGVNFDKEGRGYVLRR ILRRAVRHGYLLGMRKPFVYEVLESVCENMGSHYHYLKEKKEIIKTQCKAEEERFFETLE NGMNLFNKELEVLKKEKSKALFSGEIAFKLYDTYGFPLDLTQDMLRENGFGVDIDSFEVC MQKQKEQAKANWKGSGDSIQEGDFKTLLSKFGENVFIGYECAESKSKILALLDENFKEVK TLQGKGYVMFDKTPLYPQSGGPIGDKGRILQQNEIVATITDTKKYFGLNISTLETLKPLE IGQEVWIEVSKDRLEIAKHHSATHLLHKALREVLGDHITQAGSLVESNRLRFDFSHPKAL SYEELNKVELLVNEKILKANPQICEVMGIEAAKSKGAMALFGEKYGENVRVISFGDSIEL CGGIHVENTANIGSFYIVKESGVSSGVRRIEAVCGKAAYYYGKEALSEIASAKEMLKTQN LLEGIKKQKEQIKALKSQGGNSKNEINNLKIQEINGISMVIQGFSGSDIKEIIDEIKNKY EKVVILLIDESGRIAAGVKNAPIKAGIWVKEVAKVMGGNGGGRDDFATAGGKALDKIEEA LKKAKEFVLQSLL >gi|197325098|gb|DS990368.1| GENE 729 742893 - 745730 510 945 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167010850|ref|ZP_02275781.1| ribosomal protein L36, putative [Francisella tularensis subsp. holarctica FSC200] # 495 937 2 430 436 201 31 8e-50 MKNFEVFLEVAKEFFKERIFTDYLRRFAYGIDASCYRYIPKAVIWANNEEEVSSLIKIAG KFEIPLTFRAAGTSLSGQACSDSVLVVCFWKQIKIAKNHESIWCDCGVIGINANEALMPF GKKIGPDPATIANAQIGGIFSNNSSGMCCGVKQNSYHTIKSVRMILEDGSILDTSSDESF NEFCQSHTKLIEDLMALHKEINSDFELKALINKKFTIKNTTGYSLNAFVDFDNPKDILNH IFIGAEGTLGFVSRVEYETIEDMPYKACALLFFKDIYSASEAILLFAKNQAIISAAEIMD YACLQSVKHLKGLPKEILELQEGNCAILIQLESQTKKELEKNIAYLTPKIEQLQTLFKVH FSFDKKEQDSWWLIRKGLLPITAGKRPKGSTVITEDICFFIEDFTQGIAEVIKLFEKYQF KGIIFGHALSGNVHFIITPNLNDSGEAKRFGDFMEELAQMVTRYQGSIKAEHGTGRMVAP FVELEWGEKAYQLNKKIKKLFDGKNIFNPDVILSEDKEIHIKNLKPSLDHYNSVSEFIGK CMECGFCEKFCPTLGFTLTPRQRISVYQEICRLEAKENLSLQEQTELQELKNGYSYYGIE TCATCSACANLCPLQIDTANIAKLTKVGNFPKIAKFVAKEFHLMIPLLKGTIAFSNFTES LAKPLSKKINTILKTPAMLDYFPQANSKKEFENCFSPNSLEVVYFSSCLNRLFAPPKEAK DQRNIQEVFESLCQKSKVNVIYPKNLKGLCCSKAFKDYKETAKDMALKTFEALVEASKNG SIPIVCDHSACSLELLERAYEFEELKKVQLKIQDMPSFVLETLIPRLEITPRDSTIGVYA PCATRHYKQKEDNQSALLQIAKLCSKDVFMDKDTKCCGFAGNKGFLNPAMNQSALRNFVR FYDENPIIEGYSSSSTCEIGLSANTKRVWQHIIYLLDSCAKEAKN >gi|197325098|gb|DS990368.1| GENE 730 745733 - 746851 1036 372 aa, chain - ## HITS:1 COG:Cj1048c KEGG:ns NR:ns ## COG: Cj1048c COG0624 # Protein_GI_number: 15792375 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Campylobacter jejuni # 1 369 1 365 365 431 59.0 1e-120 MQSVEMLKKLVSYPTITPKECGIYEYIKDFLSDFKALEFEKEGIKNLFLYKEFGDCKTHL CFGGHIDVVPTGEGWESDPFIPTQKGEYLFGRGVQDMKGGVAAFLCAIREFIDSKGCFNG ILSVLLTSDEEGEAIFGTKYVLEELQKLDLLPKYAIVAEPTSVNRFGDMIKIGRRGSING KLTILGKQGHVAYPSKCINPVELIAPILSKIAGFNMDGGSEEFESSKIVITDIRGGMEVV NVTPNDLKIMFNIRNSPQTSLQDIEDYLENLLRDIPHHLELKQSSKPFLTNSSNFIVKKL LESLQNTLKITPTLSTSGGTSDARYFAEYGVKVVECGVCNDTIHSVNERVKISEIEELKA VFVELLQIFNKE >gi|197325098|gb|DS990368.1| GENE 731 746907 - 747611 761 234 aa, chain - ## HITS:1 COG:Cj0590 KEGG:ns NR:ns ## COG: Cj0590 COG0500 # Protein_GI_number: 15791950 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Campylobacter jejuni # 2 234 4 235 236 213 49.0 3e-55 MDKIFMESPQKQFEFDEKVAGVFDDMLSRSIPHYKEVLSLSADFALKFIKEDSNLLDLGT STGAMLIEIASKADFKVNLFGIDNSSFMLKHARNKLEAYGMQAELICGDILEEAFPKCDC IIANYTLQFIRPLQREKLVQKIFDSLNDEGVFILSEKVICENKRLDFEMIDYYLKAKKKQ GYSEFEIAKKREALENVLIPYSENENKKMLQNCGFKHIETFFKWVNFASLIAMK >gi|197325098|gb|DS990368.1| GENE 732 747604 - 748524 985 306 aa, chain - ## HITS:1 COG:jhp0338 KEGG:ns NR:ns ## COG: jhp0338 COG0196 # Protein_GI_number: 15611406 # Func_class: H Coenzyme transport and metabolism # Function: FAD synthase # Organism: Helicobacter pylori J99 # 12 297 1 280 280 200 41.0 3e-51 MKNLQLEEKKEILNFLSLVKEREKANTFTSIALGKFDGMHIAHQEIFKALDHQGVILCIE TNRGELLPKPYRDFYTHFPIYHLDLNIVKEKNDIEFVKFLMEILPNLKRIVVGYDFRFGK DRNYYTFDLKKHFKGEVIVIDEVFYKKLSVHSGLIKELLINGNLKLANKLLGREFEIQGK IIKGQGIGRKQLYATINLENDGFLLPQEGVYAGFIQLGKQSHITPKYPAVIFIGNRVSTD KSFAIEGHLLGIELEVQTTKAGFYFYRKIRENEYFDTLEALKEQIKQDINQAYKLLKIQP KETPNG >gi|197325098|gb|DS990368.1| GENE 733 748448 - 749176 605 242 aa, chain - ## HITS:1 COG:HP1086 KEGG:ns NR:ns ## COG: HP1086 COG1189 # Protein_GI_number: 15645700 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Helicobacter pylori 26695 # 1 238 1 234 235 189 48.0 4e-48 MRLDLFCVQQGWFYSRNKAQEAIQKGIVLVDDCAVLKSSFEVLENTKVKLKQEKCFVSRA GEKLWNFLENNPIEITNSVVLDIGSSTGGFTQVMLQKGAKEVYCVDVGKNQLHKDLREDS RIHLFEEMDIRQFTPKEKDKIFDIIVCDVSFIPIQKIFYSFENRIGDWLILLFKPQFEVG KEAKRNKKGVVLDEKKIQEALWQTIIFLEKQELKVIKYEESSVRGKEGNIEFFIACQRER KS >gi|197325098|gb|DS990368.1| GENE 734 749179 - 749676 450 165 aa, chain - ## HITS:1 COG:no KEGG:WS0584 NR:ns ## KEGG: WS0584 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 162 1 168 171 117 38.0 2e-25 MLKGVLFFMVLFFFGCEAQKSDLMPKKLEESYIQATRKTELIAKGNTQVVVIATHLNEFD SKKYPRDAGEVFFLDIYEANGKKNILKNGYELTLNNGVKPTRIIQLKKEDLEGLILQNAT QWGEYYWVEFPKQDKRTQDRLMLILSHKDFGENTLKFGFKKITRP >gi|197325098|gb|DS990368.1| GENE 735 749670 - 751001 1406 443 aa, chain - ## HITS:1 COG:XF1606 KEGG:ns NR:ns ## COG: XF1606 COG1004 # Protein_GI_number: 15838207 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted UDP-glucose 6-dehydrogenase # Organism: Xylella fastidiosa 9a5c # 1 442 1 446 450 514 54.0 1e-145 MNIAVIGVGYVGLVSGTCFAEMGNKVYCVDNLESKIESLKKGEIPIYEPGLEELVIKNYK SGNLHFTTSVCDALKNAEIVFIAVGTPMGEDGSADLQFVMEVAREIGQTMQKPLIIVNKS TVPIGTAQRVKSVISKALQERNLEIKFSIASNPEFLKEGDAINDFLKPDRVVIGVEDSWS KEALKELYAPFSRNHDRLIIMDIRSAEMTKYAANAMLATKISFMNEIANICEAVGANVND VRVGIGSDKRIGYSFIYPGCGYGGSCFPKDVKALSKIAYDAGINPRIINAVEQVNLKQKK ILGDKIIKRFGEDLSDRSFGIWGLSFKPETDDMREATSIVLINELIARGAIVKVYDPKAM EEAKNFYFKDTPNLLYAKNKYDALDSCDALVLITEWKEFRSPDFWEIKQRLREAIIFDGR NQYNATRLKEMGFIYYQIGVGQC >gi|197325098|gb|DS990368.1| GENE 736 751155 - 752066 1137 303 aa, chain + ## HITS:1 COG:Cj1098 KEGG:ns NR:ns ## COG: Cj1098 COG0540 # Protein_GI_number: 15792423 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Campylobacter jejuni # 3 292 2 293 295 365 64.0 1e-101 MPRHLIETTDFSKQEIQRILDLAEQFLDGKMRNTLKDHIIITIFFENSTRTLSSFEVATK RLGGSVVRLDVSRSSTSKGETLFDTAANLNAMSPSAIIVRHKSAGVPNILSRYVSCSIVN GGDGAHAHPTQALLDLLTLKKHLGNLEGKKIAIVGDIKSSRVANSNIELLSRFGMEVILI GPPHFIPKNRLRHHLYLKEVIDEVDAVMSLRTQTERHNLPVYSSLKDYANDYCITKEILG DRDIILLHPGPVHRNIDISDEMLKDPRCKVLEQVTHGVAIRMAVLETLITQSNASKIQNF PYF >gi|197325098|gb|DS990368.1| GENE 737 752084 - 752686 684 200 aa, chain + ## HITS:1 COG:VC0191 KEGG:ns NR:ns ## COG: VC0191 COG1280 # Protein_GI_number: 15640221 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Vibrio cholerae # 2 200 3 219 222 65 29.0 6e-11 MELTLLFILGFTAALIPGPDILFVLRNTLTLGFKQGVISLLGIFSGWLIFLGLIYLGFTS YFNSQLIQATLSGIGGIYLLYLAYLLFKKSNNHINFSQNQQKNFSLYFKGLLINLSNPKA ILFFATIISPFIQGSLEISFIVLLSALSLAFLSVIFVGTFFRRFITNALFDKIDKICSII FVCFGVWLLYSSFQTIFLLF >gi|197325098|gb|DS990368.1| GENE 738 752882 - 754198 1955 438 aa, chain + ## HITS:1 COG:jhp0497 KEGG:ns NR:ns ## COG: jhp0497 COG1158 # Protein_GI_number: 15611564 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Helicobacter pylori J99 # 4 434 8 437 438 685 79.0 0 MSQNKKDQKIRTHTPVEGYTIEDLRAKPINKLAEIAKSLGIENPQEFLRQDLIFEILKTQ VSQGGFILFTGILEITGEGYGFLRAIDENFSGSQNDAYVSSTQIRRFALRNGDIVTGQVR SPKDQERYYALLKVEAINYQSPEEMKNRPLFDNLTPLFPTEQIKLEYNSFKITGRMLDLF APIGKGQRALIVAPPRTGKTELMKELAYGITKNHPEIELIVLLVDERPEEVTDMERSVKG EVYSSTFDMPANNHTRAAELVVEKAKRMVEMGKDVVILLDSITRLARAYNTATPSSGKVL SGGVDANALHKPKRFFGAARNIEQGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVL ARHIAERRIYPAMDILKSGTRKEELLLGHDKLQKVWVLRNAIHQMNNEIDALTFLYSQMQ KSKDNEEFLNMMNDSAKE >gi|197325098|gb|DS990368.1| GENE 739 754200 - 754979 762 259 aa, chain + ## HITS:1 COG:Cj1652c KEGG:ns NR:ns ## COG: Cj1652c COG0796 # Protein_GI_number: 15792957 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Campylobacter jejuni # 5 255 2 245 250 278 54.0 7e-75 MIPKKIGLFDSGVGGISVLGNLINSKTFEEIIYYGDTARVPYGTRSKETIIQYSLEALDF FKQFKLDLLVVACNTISAYGLEAMQKATNYPIIGVIEPGVLALTNNLQNKDSKILVLGTK ATIQSQLYQTLLENQGYSCINSLATSLFVPLVEEGIFGGKILESVMEYYFQDYTEKPDAI ILGCTHFPLISKTIAHYFQNKFPTPNKPILIHSGIAIMEYLKAKYTLQKPSIASKVTFYA SDNLEKLKKTADLWLKEIN >gi|197325098|gb|DS990368.1| GENE 740 755001 - 755738 788 245 aa, chain - ## HITS:1 COG:no KEGG:WS0211 NR:ns ## KEGG: WS0211 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 4 196 10 198 248 209 54.0 6e-53 MRWIILCLFATLAFGVPKVEFKNSCVPLSQFSNTQKEILFRAYLAGKNDGFGYTLAAIAW QESCAGEYRMNFQDPSAGIFHAYIPGVINRYPKLKQNGFTQNMVGAMLVEDDEFATQIAI SELKFWEKQHKGNWRNIIKSYNKGYSWQKNERANFQAEKYYLDITTKVKQLQKHFHFDFV YEATTSKKQNLEYSNKDEKFSEYYANASKENDFMLLPIYQNGNEFASPLRQKKTIIQDFE LMENY >gi|197325098|gb|DS990368.1| GENE 741 755766 - 757067 1004 433 aa, chain - ## HITS:1 COG:ECs0608 KEGG:ns NR:ns ## COG: ECs0608 COG0642 # Protein_GI_number: 15829862 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli O157:H7 # 128 408 179 465 482 106 24.0 8e-23 MLSQRSIRGDYTRQITISFVVLLIIFSSALYNYLYFSVYNNIKNELQTQIQHILTNNINY SPNQTFYIQSSNILEDSTLQISILSEEIPNTQYIEQKELKRTYFTILKPYKNNKTIKITK DITKEKIFLNYLFKGIILLNFFALILILLFALAFSSILYKPIQKLSFTLQRIKENDLEIL DDKELPIEFHPLVLSVNNLLERIKNYLGSQKQLFIGIAHELKTPLAVMKTKCEVTLIKER EKNIYIEALKENIHSINEANTIIKMLLDLGRQESAQFEKSSLVNVNKILKNIANNFQILS KKEGKKFLVEIPQEETMITLKPTLLTQIVQNFLQNAFKFTPRGKSVLLKSSLENDVLKII VIDEGCGIDSELDDIYAPFRRAGNKSGAGLGLFLAKNAANTLGGSISLQNRIDRQGSIAI FELKINKTWNRNC >gi|197325098|gb|DS990368.1| GENE 742 757046 - 757717 851 223 aa, chain - ## HITS:1 COG:Cj0355c KEGG:ns NR:ns ## COG: Cj0355c COG0745 # Protein_GI_number: 15791723 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Campylobacter jejuni # 1 221 1 221 223 352 77.0 3e-97 MRILIIEDEISLNKTMTEGLNEFNYQTDVAENLKDGEYFISIRNYDLVLVDWMLPDGSGL EIINQVKSKSPRTAVVIISARDDAESEVEALRSGADDFLAKPFDFNVLVARIEARLRFGG TNLIEIEDLIINPDEEKITYKGQEIELKGKPFEVLTHLARHRDQIVSKEQLLDAIWEEPE LVTPNVIEVAINQIRQKMDKPLDIATIETVRRRGYRFCYPKGA >gi|197325098|gb|DS990368.1| GENE 743 758026 - 759378 1450 450 aa, chain - ## HITS:1 COG:PA2843 KEGG:ns NR:ns ## COG: PA2843 COG3200 # Protein_GI_number: 15598039 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Pseudomonas aeruginosa # 3 446 2 444 448 624 62.0 1e-178 MSNKEWNPQSWRQKVALQQPIYNDLEFLKSVEVQLSKYPPLVFAGEAQCLKNHLAKVSRG DAFLLQGGDCAESFSDFNAIRIRDLFKVILQMAVVLTYAGACPIVKVGRLAGQFAKPRSS DTETIDGITLPSYRGDIINDIQFTKEAREADPSRILQAYNQSAATLNLIRAFAQGGLADL NQVQKWNLDFVSGASSDRYKEMADKITQALAFMEACGINSSNTPILHETEFFTSHEALLL NYEEALTRKDHLSGKWYDCSAHMLWIGERTRNLEGAHLEFLRGVENPVGVKIGPNATKED ILGICDILNPKNEAGRLNFIIRMGANTIKDKLPKLLQSIKEEGREIVWSIDPMHGNTIKA SSGYKTRTFDSILEEVKSFFEIHKSVGTYAGGVHLEMTGEDVTECIGGMQAITEENLGCN YNTQCDPRLNASQAIEMSFLIADVLKNRKI >gi|197325098|gb|DS990368.1| GENE 744 759460 - 760743 1724 427 aa, chain - ## HITS:1 COG:jhp0022 KEGG:ns NR:ns ## COG: jhp0022 COG0372 # Protein_GI_number: 15611093 # Func_class: C Energy production and conversion # Function: Citrate synthase # Organism: Helicobacter pylori J99 # 3 426 2 425 426 662 72.0 0 MATITLINNETGEKFDFDLIECTRGPKAVDFSKLFERTNIFSYDPGYGSTAGCESTISYV DGKNGKLLYKGIPIEEIVKKYKFTDVAKLLITGEAPKDEKESKEFDLELRHRSFLHEGLI NIFSAFPDNAHPMANLSSAVAALSTFHFDHRDMDDEDDYQTMARRIIAKITTLVAFSYRN SIGAPLIYPDIQRNYVENFLYMLRAYPGGKLKQTLNGSEEISPLEVEALDKIFTLHADHG QNASTTTVRNVASTGVHPYAAISAGINALWGPAHGGANEKVLVQLKEIGDVKNVDKFIAR VKDKSDPFRLMGFGHRVYKSYDPRAKAIKALKDELNQKGIKMDARLSEIAEKLEEVALND DYFKERNLYPNVDFYSGIILTALKIPVTLFTPIFVIGRMPGWCAQVMEHIKNPHARITRP RQVYLGK >gi|197325098|gb|DS990368.1| GENE 745 760874 - 761395 630 173 aa, chain - ## HITS:1 COG:HP0785 KEGG:ns NR:ns ## COG: HP0785 COG2834 # Protein_GI_number: 15645404 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane lipoprotein-sorting protein # Organism: Helicobacter pylori 26695 # 2 171 4 182 184 88 34.0 7e-18 MLLKILLIFLLFLSFLNAQEIRTLQSMQANFTQKLISQNSTILYKGEFFALAPHFVLWKY ESPIPKEVYINKDSMIIYEPKLEQAIYSTLKENLDILTLIKEAKLVKENYYTAEILGQTY HLFFDKGILKQITFMDAVGNSVEILFENIQTNHKLNLQIFEFKPTSNLDILYN >gi|197325098|gb|DS990368.1| GENE 746 761397 - 761879 609 160 aa, chain - ## HITS:1 COG:Cj1022c KEGG:ns NR:ns ## COG: Cj1022c COG2862 # Protein_GI_number: 15792349 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 4 156 13 165 168 119 53.0 3e-27 MWNARLFIVLAVILSLIGAILLFIVASVDIIKAAKDTFLYYMHLLPAGSDIHNILLNTII MAIDLYLIAVVLLIFAFGLYELFICKIQIKDESSSKVLEIHTLDQLKDKLAKVIVMALIV AFFSKVLNMGMKNTQDMLYFAISILALAIGLYFLHKDSKH >gi|197325098|gb|DS990368.1| GENE 747 761995 - 763011 1307 338 aa, chain - ## HITS:1 COG:jhp0551 KEGG:ns NR:ns ## COG: jhp0551 COG0407 # Protein_GI_number: 15611618 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III decarboxylase # Organism: Helicobacter pylori J99 # 1 334 1 334 339 468 66.0 1e-132 MIFIDACFGKETPYTPVWFMRQAGRYLSEYRETRKQAGDFLSLCKNPKLASEVTLQPIDI LGVDAAILFSDILVVPMEMGMELGFFTGEGPKFTQTIQSDKDLKQLRQDSHLSLNYVYDT ITMTRQKLAKDKALIGFCGAPWTLATYMIEGQGSKTYNQTKKILYSNAQFLHNLLELITH NLKNYLESQIKAGVNAVMIFDSWAAALEESAYLEFGFEYCKQIASFIKQKYPEIPVILFP KGISGYLDKIDGEFDVFGVDWSTPLKIAKEKLGDKYVLQGNLEPCRIYDEKSMLEGAKDI LDLMQGKRHIFNLGHGMLPDLPRENAIKLVDFIHQYRF >gi|197325098|gb|DS990368.1| GENE 748 763138 - 765696 3100 852 aa, chain + ## HITS:1 COG:HP0786 KEGG:ns NR:ns ## COG: HP0786 COG0653 # Protein_GI_number: 15645405 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Helicobacter pylori 26695 # 11 852 12 865 865 1056 66.0 0 MFSLIKKILNSKNDRLVGHYKKQIKKINELESKYAALSDEELKNSFQELKNQVQTSKNPQ EELNKVLFQSFAITREASKRVLNMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPVC LNAMLGKGVHIVTVNDYLAQRDAETMRPLYEFLGYSVGVIVGGIYDDSHRLAQYSCDITY GTNNEFGFDYLRDNMKYDFNQKVQKEHYFAIVDEVDSILIDEARTPLIISGPANRVLKNY EIANNVALKLKENEDYTIDEKNRVILLTESGINHAEKLFGIDNLYSVDNAILAHHLDQAL KANKLFKKDKDYVLRDGEVVIVDEFTGRLSEGRRFSEGLHQALEAKEGVKIKEESQTLAD ITYQNYFRLYQKLAGMTGTAQTEASEFLQIYNLEVVSIPTNLPIKRKDLNDLIYKTEREK FNALVEKIIELNKKGQPILVGTASIEKSEKIHDLLKSKRIPHSVLNAKNHAQEAEIIKDA GNKGAVTIATNMAGRGVDIKINDEVRELGGLYIIGTERHESRRIDNQLRGRSGRQGDPGT SQFYLSLEDPLLRIFGSDKIKNIMDKLGLDDGEHIESKLVTRSVENAQKKVESMHFEARK HLLEYDDVANEQRKAIYRLRDELLNPKQDISHKIIENRHEAIAMLLQKAEVFNDTDNLES LCAMALEDFNIVLNIQELKDSYQKNNNFETWIDEKMKQIYEDKMSILDNQTRIEIEKLVY LQTLDNLWRDHLYIMDTLKTGIGLRGYNQKDPLVEYKKESYNLFLELVSQIKYTTIKMLY KVQLKTNQESEEEAKIALQKLNNSNQNAKTNHENPPVFKKKPVRNEPCPCGSGKKYKNCC GMSGPKKGILAK >gi|197325098|gb|DS990368.1| GENE 749 765693 - 766913 977 406 aa, chain + ## HITS:1 COG:jhp0724 KEGG:ns NR:ns ## COG: jhp0724 COG4591 # Protein_GI_number: 15611791 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ABC-type transport system, involved in lipoprotein release, permease component # Organism: Helicobacter pylori J99 # 1 406 1 410 410 433 57.0 1e-121 MTQKGIISFLLFRYLRFNKHQPFISIAAILAFLGVCIGVMVLIVAMALMNGFDKEFERKL FIMNYPLTMIQGSPEKITKETLEDLQKNFPQLQFSPFIQTQAISKIGNHMEGAMVFGIDF EFESKINPIFKEAYLQSQQNQNQTKEIFSVIVGKSLKDSYRLNYQSNLLLIFTDFTPNAI QLSPTMKRFVVEGFFQSGLIAYDKGYIYTSLEAMQIIKNLPKDTYDGIHIHSNNPQKDIV SLQEAYPQMRIVGWWEQNGNFFAALALEKRALFIVLMLIILVASLNIISSLLMTVMNRRR EIALLLTMGTSTKEIQKTFLYLGNFIGISGIICGSILAFIILFLLSSFPIISLPADVYGS SKLPLELSLLDLFSILCGSFAIVFFSSYYPAKKATQINPLEVLRNE >gi|197325098|gb|DS990368.1| GENE 750 767003 - 767782 499 259 aa, chain + ## HITS:1 COG:no KEGG:CJJ81176_1605 NR:ns ## KEGG: CJJ81176_1605 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_81-176 # Pathway: not_defined # 1 247 51 298 305 191 43.0 4e-47 MDLNDFNKICKEIAPFTHLCALHILGDPLTLDNLESYLKIATMHQLKIDITTSGFYWNNE KINLLLQSPCVHQINISLTSSLYQKKPTNLKTYFDSIFTLLSKHQVIQSEKFINLRLWNL QKDFTSPLKNSPIYQALQDFFQVPITTPKTRLAYKIHLLEQPFFEWVNLESQIISQKGFC YGGSKQLGILCNGDVVPCCFDTKGVMNFGNLLKDSMPKILENPRLKRLVENFKNGVRIEE LCWHCNYPDYLIKLNVENV >gi|197325098|gb|DS990368.1| GENE 751 767763 - 769295 1813 510 aa, chain - ## HITS:1 COG:Cj0953c KEGG:ns NR:ns ## COG: Cj0953c COG0138 # Protein_GI_number: 15792282 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Campylobacter jejuni # 1 510 1 510 510 656 65.0 0 MTALLSVSDKKGIVEFAKGLVSLGYEILSTGGTLKILRENAIKALEVSEYTQSPEMFDGR VKTLHPKIHGGILHRRNNQDDRQKASEFGIKDISLVCVNLYPFKETIEKTEDFGEIIENI DIGGPSMVRAAAKNFESVLIVTDCNDYKRVLEKLENGQNTFEFRQELMIKAFEHTAAYDC MIANYMNKRFNSGFGKNHFIAGKLVNPTRYGENPHQKGAYYEFGDFYSKHFKALKGEISF NNLTDINSAVKIASSFEDKPCVCIVKHGNPCGFAIKENVLESYIAALKCDNISAYGGVVA VNGEVGVDLANEINKIFIEVLVAPSITEEALRVFESKKKIKIFVCGGEKLCFPKDGQDFK HIEGGFVLQEADSVAPSEVKNAKCVSQKQATKEQMKDLEIAYKVASLVKSNCVVYVKDSA MVAVGMGMTSRVDAAKAAIRKAEEMGIDLRGCVLASEAFFPFKDSIEEAYKVGVSAVIEP GGSIRDEEVIECANQKGMALYFSGFRHFLH >gi|197325098|gb|DS990368.1| GENE 752 769310 - 770377 792 355 aa, chain - ## HITS:1 COG:HP1498 KEGG:ns NR:ns ## COG: HP1498 COG0795 # Protein_GI_number: 15646107 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Helicobacter pylori 26695 # 1 354 1 353 355 255 41.0 9e-68 MTLFSRYIISLYLKYFFILFVSLECFFVLIDLVKYLDELPQSANLIVLLIFYDFVYASNF ILPLSLVLAQIVLSISMLRNSQFTAFLALGYSKARIFLPIFIVSFLITLLFVLLNATPFA YAKERVDLIIERGYLGSYKNDLFIKYNENYIYFEKIFPLLKMAENVKVYEVFNKQVIKII EAPKATFIEDKWKLEDARITTLDSNLEVGKNPLKIEEQKTYETLEGFKPKILDNIYEKQG SVSIVDALEAIWLLKKQGVNTQKLRSSLYALIFFPFFAPLVMVCLARFTPNSNRYANIGG ITLGMILGVLIVWGVFFSFSRLSMSGFLPPEVSIILPIGILGLVSLWLFLRLFKE >gi|197325098|gb|DS990368.1| GENE 753 770378 - 770950 517 190 aa, chain - ## HITS:1 COG:Cj0312 KEGG:ns NR:ns ## COG: Cj0312 COG0193 # Protein_GI_number: 15791680 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Campylobacter jejuni # 1 180 1 178 181 173 51.0 2e-43 MFLIVGLGNIGEKYKNNRHNIGFCIVDSLIAFLNATKQSSKDFYGELYKASQILLLKPST FMNLSGKSVLSVKNFYKIDKMLVIHDDLDLPFGTVRFKFGGGSGGHNGLKSIDELCGKEY YRLRYGIGKPPLKNQVIDWVLGDFSKEESIENEEIIKHCIKPALEIVKLENPSELASKIS SLYTLNPKDK >gi|197325098|gb|DS990368.1| GENE 754 770954 - 771490 889 178 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|224418392|ref|ZP_03656398.1| 50S ribosomal protein L25/general stress protein Ctc [Helicobacter canadensis MIT 98-5491] # 1 178 1 178 178 347 100 8e-94 MLSGIIRESISKADTKALRKNGYLIANIYGKGRENIHCAFKRNDFIREVKNKTDLIFEVE VGTQKYPVVIQEYQKDPITSEITHVDLMLAQKGVEAKYSVKVRIVGIAKGLKNKGVLMVS KKRIKVKAAPENLPKDYEINVTDLDVGDVVLVRDLPQNNGVKIVERDDVAIVGVIKSR >gi|197325098|gb|DS990368.1| GENE 755 771557 - 772561 1122 334 aa, chain - ## HITS:1 COG:Cj0281c KEGG:ns NR:ns ## COG: Cj0281c COG0176 # Protein_GI_number: 15791651 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Campylobacter jejuni # 6 333 3 325 325 244 45.0 2e-64 MQNNISFSLWCDFIEREFLENDFTKMIEGGIIEGATSNPAIFQKSFLEESYREQKESLKG KNPKEIYEALAKSDIQRAAELLMPIYTNNPNDGYVSIEVDPNLCQDSKGTIEEGVRLFKE IGYPNVMIKIPATKAGFVAMEELISQGISVNATLVFTKEQTIECMEAFNRGYENLKKTTK KESKDFPRAVVSIFVSRFDRKCDSILKENGIPVATLGVKNAQHLYHIINDYSLPCVRALF ASTGVKDDSLDPIYYIKELYHQYAINTAPLATIEAFMKVEALQETYLPSYEELDEYFKVV ANAGVDLQKVSSELLEQGLEDFKNAFAKILESLA >gi|197325098|gb|DS990368.1| GENE 756 772573 - 773157 672 194 aa, chain - ## HITS:1 COG:Cj0282c KEGG:ns NR:ns ## COG: Cj0282c COG0560 # Protein_GI_number: 15791652 # Func_class: E Amino acid transport and metabolism # Function: Phosphoserine phosphatase # Organism: Campylobacter jejuni # 1 190 14 203 207 193 52.0 2e-49 MDGETINLLAKAYGSEQEVSEITKEAMAGKLDFYHSLRKRVKTLKGMPLKQVCEVCENLT YNPGAKEIIGILKDRGYKVVVFSGGFDEGVSAGQKVLGYDIHFSNTLHHKDGLLTGKVGG EMMFSYSKGRMLEKIQILLGVDCSNTLVVGDGANDLSMFQYAQKKVAFCAKEVLREAANI IIDTKDLSLIKNYL >gi|197325098|gb|DS990368.1| GENE 757 773623 - 776046 2806 807 aa, chain - ## HITS:1 COG:jhp0111 KEGG:ns NR:ns ## COG: jhp0111 COG0574 # Protein_GI_number: 15611181 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Helicobacter pylori J99 # 1 804 1 804 812 1299 77.0 0 MKYIKFFKELNNKDVPVVGGKNASIGEMFQELVPMGIKVPNGFAITSEAYWYLLESGGIR EKIKELLEGIDVTEIDVLNVRSKKIRDMIFGTPLPIDLREEILEAYRILSQEYNMEEADV AVRSSATAEDLPDASFAGQQDTYLSVQGQTELIHYIKSCMASLFTDRAVSYRASRGFDHF KVALSVGVQKMVRSDKGSSGVMFSIDTETGFKDAVFITSAWGLGENVVGGTVNPDEFYVF KPALELGKRPILKRQLGYKNIKMVYAAPGAKHPTKNIETTEEELKSFSLSDEEVLTLARY AILIEKHYTKEAGEYRPMDMEWAKDGNSGEIFIVQARPETVQSQKMKKQNNTLEKYFFKD KSEKEILLSGKAVGGKIGTGKIRVIDNIANMGELKRGEILVTDNTDPDWEPAMKKAAAVI TNRGGRTCHAAIVAREIGVPAIVGAVGATEKLETGMEVTVSCAEGEDGFVYNGIYEYEVE KVDLSSLEQPKTKIYMNIGNPEKAFAFSMIPNNGVGLARMEFIINNYIKAHPLALMDLHN GNKEFDGVEGVKEIMSGYANPKDFFVKKIAEGVGMIAAAFYPKPVIVRTSDFKSNEYCRM VGGKDYEPHEENPMLGYRGASRYYSDQYRQAFEWECQALAMARNEMGFSNMKIMIPFLRT PEEGRRVLEIMRKNGLVQGENGLEIYVMCELPVNVILADEFLQLFDGYSIGSNDLTQLTL GVDRDGELVSHVFDERNPALLKMFKMAIDACKKHNKYCGICGQAPSDYPEIAEFLVENGI TSISLNPDSVIETWDRIVKLEKRLGIS >gi|197325098|gb|DS990368.1| GENE 758 776234 - 778444 2748 736 aa, chain + ## HITS:1 COG:Cj0955c KEGG:ns NR:ns ## COG: Cj0955c COG0046 # Protein_GI_number: 15792284 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Campylobacter jejuni # 5 734 3 728 728 865 58.0 0 MENLEKILKQHKLTQEDYQNILNILKREPNLVEIGIFSAMWSEHCSYKSSKIYLNGFPTR APWVIQGPGENAGIIDIGGGYGAVFKMESHNHPSFIEPYAGAATGVGGIMRDIFTMGARP VASLNSIRFGNITKTDSIGAKHRYLLRGVVAGIGGYGNCMGVPTIGGEMSFEDCYEGNIL VNAFTLGIVKNDEIFYGKAEGIGNPVIYVGSKTGRDGLGGAVMSSDSFNEDSKSLRPTVQ VGDPFTEKLLLEACLELFKKDLIVGIQDMGAAGLTSSSFEMAGRSGSGMIMHLDKVPTRE ANMTPYELMLSESQERMLICAKKGCEKEILEIFTKWELDCAIVGEVTNSGKMELYWYNEK CAEIPIAPLSEKSPILKRPVSENPTYLNHIESLKQETLQKLDSNEVFKTLLQSPDVSDKA WVYEQYDSTVQTNTLTKIGSGGASAIRVKENGKGIAMSVACPVRLCYLNPKEGAKQAVAK VGRDIALRGGRALAITDCLNFGNPENPEVMWQFKESCEGIKEACKALNTPVVSGNVSLYN QTNNSDIYPTPSIAGVGVIDDIYHLLRSDFNQEDTEVYLLKSKNATPQFGGSLFAKYFAN SIKGEISSINLNDELFLWSVLASAKEHKILKAAVDIYQGGLAIALAKACIKGNIGCKSVQ TLDNQALFGESPTQVLIALDSKNVSTLQNLLENSNLHLEKIATLGGETIEISDISIPLSE AKRIYFESFGTTLQTL >gi|197325098|gb|DS990368.1| GENE 759 778359 - 778841 286 160 aa, chain + ## HITS:1 COG:no KEGG:WS0828 NR:ns ## KEGG: WS0828 # Name: grpE # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 47 160 10 124 125 137 58.0 1e-31 MKLAIFQSLLVKLKEFILKALGPLFKPFRKIALLGAILFYPAFCLDLANFYQQVHKQSLQ KNYVKFRGRNLVSIDSYHLLNQKEKMALGYSLVLIHEKIASFIYFNKLSGIGISTQRNSH LQFDIKYYETLKDIGIGGEFYAMCVLPFFDKCILLGYESF >gi|197325098|gb|DS990368.1| GENE 760 778847 - 780064 725 405 aa, chain - ## HITS:1 COG:no KEGG:Cla_0642 NR:ns ## KEGG: Cla_0642 # Name: not_defined # Def: glycosyltransferase # Organism: C.lari # Pathway: not_defined # 3 404 2 399 401 296 39.0 1e-78 MKKHKFGILLAATKDSSFTLGVMIANIKDKMGSFVDVFYIIHDGFSLKDKEVMQKLAQNS KVVFCEFTQQTFMDNFKRFNPDNLRINFAQSKGFLGRWTHMVYACFEIFRYLEECENILY LDFDILLLKGLEHLLKLKELGITIAAERGKKQLKEVYPNYYGKFKDFRIYRSPIIFVNDS LVNPAECYAFVYQKSIELGLNDQGVLSLLIFEKGIKAKDLGKDYVGSVLWLANDDSYFIH SYGRENRFWNNRLCHQIWREWGEYYRIWLNNGGSPYLRGFVAKTTYGYERVRFCLAYKVG YAIVECYYQTSKIKYLKLPFKIAQVILKHKRKLREYRRICKKSPHLRLPMFCQYDDYQSA LKEKQSIPYRLGEAVLEFCKEWWKCNFIKLYRKIYLIKKQALKKS >gi|197325098|gb|DS990368.1| GENE 761 780241 - 780894 787 217 aa, chain + ## HITS:1 COG:MA3437 KEGG:ns NR:ns ## COG: MA3437 COG1296 # Protein_GI_number: 20092249 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Methanosarcina acetivorans str.C2A # 1 210 51 256 291 127 42.0 2e-29 MGYLPLGIAFGILFSKELQLDWYYGILISILVFTGAGQFLLVSLIASYTGFLEIAIASFL LNIRHLFYSLAITDEIKKFGIAKYYILFGLTDETFAVLKANKAVLNLSSKELERSYFYIT FLNHCYWVLGSGIGIFLGNALGFKPDGVEFALTALFSVLTLSLLQNSPNKKPFYIGLLLG IIGLIIFPNQYFLLLSLFCGILILLFGRKWIENARSF >gi|197325098|gb|DS990368.1| GENE 762 780878 - 781207 260 109 aa, chain + ## HITS:1 COG:no KEGG:WS1319 NR:ns ## KEGG: WS1319 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 21 109 17 105 105 70 42.0 2e-11 MQDHFDTFYLISAILASSIGTALTRLLPFFVFKNITNNKLLKYLQETMPLLIMTLLIFFS LLNTPWSKTYGLYELGGIFSAILCFLWFKNSVFSIFTGIIFYIFLTRIF >gi|197325098|gb|DS990368.1| GENE 763 781207 - 781548 518 113 aa, chain + ## HITS:1 COG:BMEI1557 KEGG:ns NR:ns ## COG: BMEI1557 COG1393 # Protein_GI_number: 17987840 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Brucella melitensis # 2 111 3 113 116 89 40.0 1e-18 MVRIYGIKNCGSVKKALNFLEQNKIPYEFIDFKKTPPNKETLEKWLQSVPLKILFNTKGT TYRKLALKDKNLSEEDIKEYLIKEPNLIKRPVIEASHQIIVGFQEEEYKEFKW >gi|197325098|gb|DS990368.1| GENE 764 781542 - 782867 1029 441 aa, chain + ## HITS:1 COG:HP0087 KEGG:ns NR:ns ## COG: HP0087 COG0791 # Protein_GI_number: 15644717 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Helicobacter pylori 26695 # 16 432 14 443 457 270 36.0 3e-72 MVRFLTFLFFLALLYGCASKPPKLELPKQDLQSYISNESFKTHSTKTLKKEYLQQFFSPF DKIPKNDSIQAQWGLQQALTNLGYGENLLPYSLEEIQKLAKEANYKNFPSLKQPAIVTKS SNIRVLPTNKPRFFNPKTAGEGFPFDYWQNSYIYLGTPILITHYSQSKKWAFVESGFVSG WIEVLNIAILDHKQVQELKQTQDFLVAKRDNIPLYNTHHEFLESARIGMLLPSLGSTKKA YESFIFTRTQRGYAKKVKIHLQTKGFTKFPMPFSPKNYTSLAQNLLGEKYGWGGMFGNRD CSMFLRDTLGNFGFYLQRNSQAQILPNNLDKSRYFDLSQMNSHQKKLFIQNNAIPFATLL GMKGHIMLYTGSFGEEIFVLHDIWGLKTLQNGIEGRSIIGKIAITPLNIGENIKGINQDT LLIKRIYGMRNLFNKEDLYAK >gi|197325098|gb|DS990368.1| GENE 765 782857 - 783594 861 245 aa, chain + ## HITS:1 COG:slr2044 KEGG:ns NR:ns ## COG: slr2044 COG1121 # Protein_GI_number: 16329703 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn/Zn transport systems, ATPase component # Organism: Synechocystis # 6 235 19 255 289 167 39.0 1e-41 MQNSNSQKIIECKNVNFSFTKERILYNVDWIIYEGDFWAIIGPNGGGKSTLARLLTGLLK PTEGKILKNPALRIGYVPQNTFLNRHFPISTLEVVMMGFLKSGFLGGFLPKNAKEIALEL LEQFHLEAFAYKKIGELSGGQRQRVLIARALCGNPNFLVLDEPTASVDQKNQKEIYDLLQ KINKEKTIIIISHDISVLLGYAKKVLYVNQEVTEHELPKISNQSIEDHFCEVEMLLQSQY SQNLN >gi|197325098|gb|DS990368.1| GENE 766 783606 - 784961 1695 451 aa, chain + ## HITS:1 COG:HP0086 KEGG:ns NR:ns ## COG: HP0086 COG0579 # Protein_GI_number: 15644716 # Func_class: R General function prediction only # Function: Predicted dehydrogenase # Organism: Helicobacter pylori 26695 # 1 446 1 448 450 478 54.0 1e-135 MNQSYDVAIIGAGISGSALFYALTHYTNLKKVVLLEKYSQPATLSSSGNNNSQTIHAGDI ETNYTFEKAKKVSRGAKLLVSYAFHHQLQNKSIFEYQKMAIGVGEKEVEFMTKRHEEFKE IYPELEFFDKETLKQIEPNVIKMPDGSDRPEPIVGSGVRKSFCAMNFCATATHMIEQSVF GEHKALFNHKVTQIIQQGDGAYTIQSQGQSPITASFVLVNAGAHSLLLAQNMGYGLDLGC LPVSGSFYFIPGSKLQGKVYTVQNPKLPFAAIHGDPDVVAQGKTRLGPTALVLPKLERFK SGTFIDFLKSFGFGSATTKIMWDLLSDNEIRNYIFRNFIYEIPSIGKKYFWEEARKIIPS IQLNELSYAYGFGGIRPQVLDKTQKKLVLGEKKIKSNQGITFNMTPSPGATSCLRNALID MLEITEYLKAEIKMDKIKEELNEEDLGWLID >gi|197325098|gb|DS990368.1| GENE 767 785059 - 785781 691 240 aa, chain + ## HITS:1 COG:Cj0141c KEGG:ns NR:ns ## COG: Cj0141c COG1108 # Protein_GI_number: 15791529 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Campylobacter jejuni # 4 233 39 267 267 144 42.0 1e-34 MVFISGGIAHSVYGGVGIAAFFGLPILLGATLFSVFCAIILAYMLLYAKERLDALVGSLW AFGMALGIILVELTPGYNKDFMGYLFGSILSITQNDIQYMIIFTCFLILFIILNYRIILG ISYDSEFTQLQGINTHFFSIILMILIAIGIVITMRSVGIILIIALLSIPAYCSEILTNSL AKMMFVSSLISFACILGGISISYFCDLQAGASIVILLSLFSFVLALIHSLLNKFSSKKVL >gi|197325098|gb|DS990368.1| GENE 768 785781 - 785993 247 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418406|ref|ZP_03656412.1| ## NR: gi|224418406|ref|ZP_03656412.1| hypothetical protein HcanM9_03915 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1077 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1077 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 70 1 70 70 95 100.0 2e-18 MENLDKKINHSNNTATRAIKIALVCCVITIIFATLSLWVLLNQITATANLSKNQKILEQK ILILEKQQKQ >gi|197325098|gb|DS990368.1| GENE 769 786049 - 786195 206 48 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|253827725|ref|ZP_04870610.1| ## NR: gi|253827725|ref|ZP_04870610.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] # 1 46 1 46 187 76 100.0 5e-13 MLSSVNPYGIGNIYPQKPTSLSKEVESQAQTTQELQELPNLSKEALAS >gi|197325098|gb|DS990368.1| GENE 770 787616 - 787753 68 45 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253827726|ref|ZP_04870611.1| ## NR: gi|253827726|ref|ZP_04870611.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] # 1 45 2 46 369 73 97.0 4e-12 MFGNSKREQELIDENKELKNKIEQLEKALRHCSLKNEEYQKSLDR >gi|197325098|gb|DS990368.1| GENE 771 787804 - 788418 695 204 aa, chain - ## HITS:1 COG:Cj1066 KEGG:ns NR:ns ## COG: Cj1066 COG0778 # Protein_GI_number: 15792391 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Campylobacter jejuni # 1 203 1 201 201 214 54.0 1e-55 MQKEAFSEIIHQRYSCRDLKESLLKREDLEYILEAGRLSPSSLGLEPWRFLVVQDSNKKA EISKIANHQEHVKKCGAIIIILARLDFGEYFIPKLQARGMKEEELQKRIAIYKPFIDGMN ENEKLHYAREQTYLALGNIANAACAIGLGSCIIGGFDSKALDQYLKLDIAKERSSIMLVV GEYANKMIPQKARFSKEEVIAFLD >gi|197325098|gb|DS990368.1| GENE 772 788435 - 789412 1171 325 aa, chain - ## HITS:1 COG:jhp0011 KEGG:ns NR:ns ## COG: jhp0011 COG0482 # Protein_GI_number: 15611082 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Helicobacter pylori J99 # 1 323 4 349 350 380 57.0 1e-105 MKALALFSGGLDSLLAIKIIKDMGIEVLALHFDIGFIGKNDKSEALKAILSQIDVPLKVV DIKRQFFNEVLFEPKYGYGKYFNPCIDCHGNMFSHAFSMLESEGASFVISGEVLGQRPKS QRAEALLQVEKLCNAQGLVVRPMSAKLLPITIPEQKGWIDREKLLDIHGRGRERQLKMVE EYGIKNFAKPGGGCLLTEISIANKIKDLKSHREIVFEDMEMVKYGRYFILPNGARCIVAR NEEENRKLSFQHPKMSKIELLDCVGPLALVEKDSTKEDKEMAIALALVYGKTEADRSYKV RFEGEEREAKPFVSKEKAQEFLLQS >gi|197325098|gb|DS990368.1| GENE 773 789390 - 791063 1272 557 aa, chain - ## HITS:1 COG:HP0012 KEGG:ns NR:ns ## COG: HP0012 COG0358 # Protein_GI_number: 15644645 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Helicobacter pylori 26695 # 1 549 1 557 559 453 43.0 1e-127 MIAEQSIEALKNQLDIIEVVSHYIELKKIGATFKACCPFHQEKTPSFVVNQNKGFYHCFG CGASGDSIAFVMQYEKLNYKEAIEKLAQLYNFTLTYEKDKNSFQEDSYRIMEFMREYYQN SLTKEVESYIQSRGITLSTQQKFELGYAGQNYEIMATLQKHSINLQEALNLGILGVDNEN GAKRYYARLTQRLIFPIRSPQNKIVGFGGRTLGNHPAKYINSPQTKLFNKSQILYGYPQA KETIYKKEEVIVTEGYLDVIMLHQAGFTNAVATLGTALTKEHLPLLSKGNPKVILAYDGD NAGMNAAFKAASLLSLANKEGGVVLFDGGLDPADMVKNGDIARLKELFLTSIPFIDFVLE WIIKKYDLDNPLQKDKCLQEALEYLQHFSLVIQEDYKGFLAQRLKLPSHLIRIKKNNQKE QIKEPIQSEGSFDLAEKAIIKSVLEDMNLLEFVMDFLEPTMFFSQKEAYLKLLKGELEDP SLIRILLDNKVKAQDKEKLKQQMIMILYQYYEEQKQKVINEKQLSLREKSFLIRKYQKYL DNLKKGDLIVYEGFSTF >gi|197325098|gb|DS990368.1| GENE 774 791285 - 792229 933 314 aa, chain + ## HITS:1 COG:no KEGG:HH0697 NR:ns ## KEGG: HH0697 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 8 314 39 361 361 194 37.0 3e-48 MSKKQHESLAKFMESFDYIGFDKEIKEFLALSQNPIPSILFMANMYQKGANYEKAIRLYT TLLDYIKNPIDKIPILESLGNIYYKAGFPLRAKEIYLEILHHYPRSQKILKSLIKIYEDL NLYKEALEALDCLEEIEGGTTLHWHYLEAKILIFQKDDNQDKIKKILALFQKEPKLSRII LSFLKDFHPSLFWENIQKLDSTNLLEILDILWNCNSNELPTITIKNKLLQDILEAKGFYP TTNTKKETFELEALSLLNKEKNYAGDLKFTYHCTDCKANMPLPFETCPHCGTLLSIKTII TLKQKQDETRYSLL >gi|197325098|gb|DS990368.1| GENE 775 792204 - 792635 456 143 aa, chain + ## HITS:1 COG:HP0661 KEGG:ns NR:ns ## COG: HP0661 COG0328 # Protein_GI_number: 15645285 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Helicobacter pylori 26695 # 1 137 1 137 143 159 56.0 1e-39 MKRVTLFCDGSSLGNPGYGGWCGILRYQDKEKILKGSAKNVTNNQMELSALIFSLKALKE PCEILVISDSKYVLDGLSKWLPNWIIKDFKNIKNPELWKQYLEVSKNHKIEVKWVKGHNG HKENELCDKIAKEEALKLKNQKE >gi|197325098|gb|DS990368.1| GENE 776 792638 - 793312 686 224 aa, chain + ## HITS:1 COG:HP0662 KEGG:ns NR:ns ## COG: HP0662 COG0571 # Protein_GI_number: 15645286 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Helicobacter pylori 26695 # 6 222 22 238 240 228 57.0 1e-59 MDLKDFQQYLGYHFSNQNLLQEALTHKSAKKSTHNERLEFLGDAVLDLIIGEFLYKKFPH SPEGELSKMRASMVNEKAFAKIARYLNIGEYLYISHSEEQNNGREKDSILSNAFEAIVGA IYLESGLEKVQTIVLKILDILYPKIDLENLFYDYKTSLQELTQALFGITPEYVVLDSKGP DHNKEFLMGVFIQNKEYAQAKGKSKKEAQQNCAKIALKILKDRQ >gi|197325098|gb|DS990368.1| GENE 777 793309 - 794379 1142 356 aa, chain + ## HITS:1 COG:jhp0608 KEGG:ns NR:ns ## COG: jhp0608 COG0082 # Protein_GI_number: 15611675 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Helicobacter pylori J99 # 1 356 1 362 365 468 65.0 1e-132 MNTFGETLRLTTFGESHGVGIGGVLDGIPAGLAIDEDFIAQEMQRRQGGRNLFSTQRKEA DKVEILSGVFEGKTTGTPLGFFIHNSASKSSDYTNIKDIFRPGHADFTYFHKYGIRDYRG GGRSSARETSARVAAGAIAKCLLNEFGITLRSGIFSIGEIACQTIDFNFAKESEIFSLDK NTEEAQKEAILKARNSHDSIGGVALVSAINVPIGLGEPLYYKLDSVIGALMLGLNGVKAV EIGSGTMAPKMKGSLHNDSITPSGFSSNHSGGILGGISNGEEIYFKVHFKPTPSIFIPQE TINIQNEKHTCAIKGRHDPCIAIRGSVVCESMLALILADMLLLNATSKLENLKKIY >gi|197325098|gb|DS990368.1| GENE 778 794379 - 795293 717 304 aa, chain + ## HITS:1 COG:CAC2186 KEGG:ns NR:ns ## COG: CAC2186 COG3980 # Protein_GI_number: 15895455 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase # Organism: Clostridium acetobutylicum # 45 282 78 316 339 60 25.0 3e-09 MSKALLFVDKKFGVGLGHFSRCNALLEILKSNGYEAYLFDTSLLDLELQKCDLIVIDSYV LGLESYQKATAFAPHCLFFDDTLRLPYPNAFLLNNAPNAQKTLYQSHYPNHTLLLGGDYR LLQKPFLQKLNTTPIKSPRPKIKKILITLGGEDILNLTSFIIDALATYNPNYEIHYIHKN TKLTNKAKGYYGLTQEEMADLFYKMDLCICACGQTLMEIIASQTPRIALEIAPNQNANLK SYTKAILSIQEVWKLDQDSLKSQLLSYLKAIENPNLRTQQISQGIAILNQSTKWDSFLQN LKNL >gi|197325098|gb|DS990368.1| GENE 779 795360 - 796730 1490 456 aa, chain + ## HITS:1 COG:PM0380 KEGG:ns NR:ns ## COG: PM0380 COG0733 # Protein_GI_number: 15602245 # Func_class: R General function prediction only # Function: Na+-dependent transporters of the SNF family # Organism: Pasteurella multocida # 2 453 7 455 455 508 62.0 1e-144 MQRQTWTNHITYILTIAGATIGFGATWRFPYLVGENGGGAYVLIFILAMILVGIPIILVE NVIGRMAHKNSIDAFGENTDKGAWKIIGYMGAIGAFGILAYYMVLGGWVIAYIANIFTSF FGDIGLNLSSPITKEITSEFYSQNIENSPWLIGFYTLLFVAINYIILKKGIIDGIERSVK WLMPLLLLCLLGMIARNITLDNAMEGIKFYLIPDFSAITPKLFLYVLGQVFFALSLGFGV MITLSSHLRKDEKLVKTACITGIINTLVAILAGFIIFPSLFSVGLAPDSGPSLVFKSLPI AFSHMVFGGFFAIVFFVLLLIAALTTSLTIYQVIISILEEKFKFSHNKAVSFTLIAVFIL GNLPCILAYGPWSDIIIFGRNIFDNFDFISGNIFFVLTALGSVIYVGWVLDKNAIKEINN YSSKPSLFSLIWFYYIKYIIPAIILAIFIGGFLIKI >gi|197325098|gb|DS990368.1| GENE 780 796872 - 797699 826 275 aa, chain - ## HITS:1 COG:no KEGG:HH1598 NR:ns ## KEGG: HH1598 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: Oxidative phosphorylation [PATH:hhe00190]; Metabolic pathways [PATH:hhe01100] # 54 271 44 268 270 93 29.0 9e-18 MLREFFEIYCQNGGKITSLNQYLKENQKGAVVLLGGFILDFLEKIPSLVKQESVFLLSPL NFNPASNIKQFLYEVGCEELVLALLAESLLQDEVVKNQTFIQDLDIGYLASEINLAEEEI FEIQQSFKKNSKNALIIGEDIFTHKNAKNIAKILALFSQNHTLEVVFLEEQMVSIMPHFE EITKVEEVGDFDGLVAYLHYDDSIKSPILKASRQFGLVGKVSDKERVEVVFEDSEVLEVE FYENKEIKGMVGILLLPTKEDSSFCYQKIRLNKIM >gi|197325098|gb|DS990368.1| GENE 781 798140 - 798547 438 135 aa, chain - ## HITS:1 COG:no KEGG:NIS_1802 NR:ns ## KEGG: NIS_1802 # Name: not_defined # Def: periplasmic nitrate reductase component NapD (EC:1.7.99.4) # Organism: Nitratiruptor_SB155-2 # Pathway: not_defined # 12 124 2 113 115 84 46.0 1e-15 MQNENEKSQDFNVSSLVVMCKGEDIQRLWEEIEKIPQTQCHYKDESGKIIVTIESSNVDE EIRILKKIERLKGVISAQMIYTYHNSELEVLQENIQRQDAVPEILKNDNLKAEEIGYSGD VQDKIDNILNKKRTK >gi|197325098|gb|DS990368.1| GENE 782 798557 - 799510 902 317 aa, chain - ## HITS:1 COG:no KEGG:WS1171 NR:ns ## KEGG: WS1171 # Name: not_defined # Def: putative periplasmic protein # Organism: W.succinogenes # Pathway: not_defined # 18 317 22 319 319 217 42.0 5e-55 MLKIIFVFLCFLESVFAISPFYQLSLKNNIIDMNYIDNKILVGTDFGEVVEINFDSEFQN ISQKTLVELPHISNFFGDSYLPKVFSVDFFDQRFLIDSEGSDGKKNLFIFGEKLEKLPLT LNVKKAAFVDKDKIFLGLVSNEIVLYDLKNNKVLYQKQLSEATFSDFILSEDRTRFLVSC ESGILYYGEVLSGEILEELSGLNKDNVYEAKMALGQNGLVVITAGQDRKAGVYLKDSRSY TKEAEFLVYSVGLSPSGEIGAYMKNEMSDIAVFKIVNKEDIAILQGHKSLLNSIIFVDDK RIISAEDGKNILFWKLP >gi|197325098|gb|DS990368.1| GENE 783 799504 - 800022 188 172 aa, chain - ## HITS:1 COG:ECs3097 KEGG:ns NR:ns ## COG: ECs3097 COG1145 # Protein_GI_number: 15832351 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Escherichia coli O157:H7 # 28 165 24 156 164 68 32.0 7e-12 MKENRRDFFNFFLKRGKQKESNSWLPLPPYNQDKSLFEKFCKDCEKPCVKVCETICQKGI LKIFDGIPYVDFSLEGCKLCGECAKACPNGVLEEESESHWNFEVCIDELQCLGYHKTMCY TCKEACQSVLGSQKAIDFIGMFYPVINKNCIGCGFCVGVCPTQAIVLKERKC >gi|197325098|gb|DS990368.1| GENE 784 800019 - 800543 753 174 aa, chain - ## HITS:1 COG:Cj0783 KEGG:ns NR:ns ## COG: Cj0783 COG3043 # Protein_GI_number: 15792121 # Func_class: C Energy production and conversion # Function: Nitrate reductase cytochrome c-type subunit # Organism: Campylobacter jejuni # 26 174 25 174 174 151 47.0 7e-37 MNFKTIMIAGASTLALIFIGCKSMQGYSAEEIGLRKTTLFSEEAQIQAYDYSGKAAGESE LIERAFENAPPMIPHNLDGMLPITRDNNSCTGCHLPGIAEAVGATAMPKSHFYDLRNNKD LHEEMDENRFNCVICHTTQVNAAPLVENNFKADFRQDDGNTRSNLLDILNEGVK >gi|197325098|gb|DS990368.1| GENE 785 800545 - 801342 699 265 aa, chain - ## HITS:1 COG:Cj0782 KEGG:ns NR:ns ## COG: Cj0782 COG0348 # Protein_GI_number: 15792120 # Func_class: C Energy production and conversion # Function: Polyferredoxin # Organism: Campylobacter jejuni # 5 264 3 260 260 248 53.0 7e-66 MKRFRFLALRRIIQIGLLCLYFLGNYAGIKILQGNLSSSLLFGTIPLSDPFAILQLFFSG ALLGVNALIGGLIILAFYALLAGRAFCSYVCPMNLITDLANYLRRVLRVNYAPFYLSKKI RYFALVLALILSSLFGMAAFEAISPIAMIHRGIVFGMGFGAFAVLLVFLLDLFIVPHGFC GHLCPLGAFYSIVSKFAFLKVKYDLDSCTHCMECKKICPEKQVLGLIGKESGKVISGECT RCGRCIEVCGDNALKFNLLDFAKRK >gi|197325098|gb|DS990368.1| GENE 786 801342 - 802121 994 259 aa, chain - ## HITS:1 COG:Cj0781 KEGG:ns NR:ns ## COG: Cj0781 COG1145 # Protein_GI_number: 15792119 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Campylobacter jejuni # 7 259 4 246 246 264 52.0 1e-70 MDNKNPRRQFFIQAAQAIAMTMMGGLVWSAFLKESRANPLILRPPGALEEKEFLKHCIKC GLCVEACPFDTLKLASAGSGKPIGTPYFIPREIPCEMCPDIPCVAICPTKALEPKLVQSD GIWEINKARMGVAIVDKEHCVAYWGIQCDACYRACPLMGEAIKLELKRNERTGKHSYLLP VVESEVCTGCGKCEKACVTQEAAIIVMPREVALGAVGTNYIKGWESQDEERLEDATLHQL RNSNKNLQEVQDYLNNGEL >gi|197325098|gb|DS990368.1| GENE 787 802127 - 804913 3101 928 aa, chain - ## HITS:1 COG:Cj0780 KEGG:ns NR:ns ## COG: Cj0780 COG0243 # Protein_GI_number: 15792118 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Campylobacter jejuni # 5 928 3 924 924 1486 75.0 0 MAQTRREFLKTAAAVSAASVAGIAVPAPQALMAKEAEGGWKWDKAVCRFCGTGCGIMVAT KDEQIVAVKGDPAAPVNRGLNCIKGYFNAKIMYGQDRLTQPLLRVNAQGEFDKNGRFQPV SWQKAFDVMEQKFKEAYNELGPTGIGVFGSGQYTIQEGYAAAKLIKGGFRSNNLDPNARH CMASAVVGFMETFGIDEPAGCYDDIELTDTIVTWGANMSEMHPILWARVTDRKLSAPDKV RVVNLTPYSNRTSDLADTEIIFTPHTDLAIWNYIAREIVYNHPESIDWDFVKKNCIFTTG FVDIGYGMRMDIKHAKYNPKELDTAAKEKSKVLSENEGITLRYLGMKAGEVMENKHIADA GNHWEISFEDFKTALEPYTLDFVAKIAKGDSQESLESFKEKLKTLASYYVDKNRKIVSFW TMGMNQHTRGTWVNEQSYMVHMLLGKQAKPGSGAFSLTGQPSACGTAREVGTFSHRLPAD MVVGNKKHREITEKIWKLPSGTINPQIGAHFMQIMRDLEDGKIKWAWVQVNNPWQNTANA NHWIKAAREMDNFIVVSDAYPGISAKVADLILPVAMIYEKWGAYGNAERRTQHWKQQVLP QGNAMSDTWQMMEFSKRFTLKEVWGEKKINAKLTLPSVLEQAKAMGYSEDTTLFEVLYAN QEAKSYKTDDKMLENELNSEVFGDKRQVVGSDGKVFEGYGFFVQKYLWEEYRKFGIGHGH DLADFDTYHRVRGLRWPVVDGKETQWRFNSKYDYYARKANNGEFAFYGTSGKELPRGDLK SPKTSEKYSLKNKAKIFFRPYMDPPEMPNAEYPFWLSTGRVLEHWHSGTMTMRVPELYRA VPEALCYMNPKDGEKLGVQQNDAVWVESRRGKVKARVDMRGRNRPPMGLVYVPWFDEKVY INKVCLDATCPISKQTDFKKCAVKIYKA >gi|197325098|gb|DS990368.1| GENE 788 805055 - 806014 1255 319 aa, chain - ## HITS:1 COG:jhp0017_1 KEGG:ns NR:ns ## COG: jhp0017_1 COG0835 # Protein_GI_number: 15611088 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis signal transduction protein # Organism: Helicobacter pylori J99 # 3 187 4 188 188 293 75.0 2e-79 MSNLSNVDQITNLHRNNELQLLCFRLEKDKDLYAVNVFKIREVVKYRGEITIVSHGGSSL VEGLITIRELTIPLIDLKKWFYYDSRDKSRNLEPYGIKREDGDDEVIMICEFSKWTVGVR IYEADRILNKKWTEIEQSAGIGNSGLNSKLVSRTRYFDGRLVQVVDIEKMLVDVFPWIED EKNDEIDKIKQIVTSNEVLLADDSPSVIKTMQNILNKLGVSYKTFSNGQKLLDYIFAKDT DISKIGIIITDLEMPEASGFEVIKQVKNNPLTAHIPVVVNSSMSGSSNEDMARSLKANEF ISKSNPIEVEDALRRFMIK >gi|197325098|gb|DS990368.1| GENE 789 806070 - 807773 254 567 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 334 555 2 228 245 102 32 4e-20 MKVFLKRFYPYIREYKLYFFYAIIGTIMVAVASSASAYLVKPVLDDIFIKKDITMLQVLP FLVVLAYFSKGLGAYIQTYYMNFVGQDIVRRLKDILLDKMLTFEMEFFNRYRNGELISRI TGDIGAVQGAVSNYFIEGIRESLTILGLVGVVIYQSPELAFYGLVVMPLALYPITLIARK MRHASAKMQQKNADLSAKLIEIFNNIELIKASSGETIEKEEFAKHNKDLFKLSMKTVRVS ELTSPLMETLGAIAIAVVIFIGGHKVINNEISTGAFFSFVTALFMLYTPFKRVSGLYAKI QVAFAAGDRIFEMLDRKAKIKDGSEVLKNEVKEIAFRDVDLFYGEKQALSKINLTIHKGE SIALVGSSGGGKSSLVNLLLRLYEPNNGSVEINGCNIQDFTQASLRSKVAIVTQRIFIFN DSIAKNIAYGGVIDEIKVKEALHRARILDYVESLPNGIHTILEEFGANLSGGQRQRIAIA RALYKNPEILILDEATSALDNKTEEEFRDALNEVIKDRIVIIIAHRFSTVSLANRIYFFQ HGRIIANGTQKELLEKCEAFKEYYKNL >gi|197325098|gb|DS990368.1| GENE 790 807773 - 809707 2016 644 aa, chain - ## HITS:1 COG:jhp0544 KEGG:ns NR:ns ## COG: jhp0544 COG0744 # Protein_GI_number: 15611611 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Helicobacter pylori J99 # 3 640 6 653 660 712 52.0 0 MKFFLRIFFTLCIIAFIAIIIFVSQFYYEIYKDTDKIVEYNPPITTQIFDRKGRLIANLF DKEFRFYAKFEEIPPRLIEALLAIEDTLFFEHPGVNLDAIMRAMLKNIKSGGYVEGGSTI TQQLIKNVALTRDKTIERKLKEVLLAFQLETILSKEQILERYLNHTYFGHGFYGIKTASQ GYFRKEMNELTLKEIAILVSLPRAPSFYDPTKNYDFSLARANNVLQRMEELGWISKEQLD EGIAESPKVYDDTLTQNVSPYVVDEVQRQLKDITNLKSGGYKIYLNIDLDYQEIAQESLL FGYEQILSRHKDDKKMQEKLNGAFVVLESKTGKILALVGGVDYQKSHFNRATQSKRQIGS SIKPFLYLSALNSGLGQNYRIPDITRTYEYRNEGKNKRWQPKNYTPNINGYVTLKEALRR SLNLATINLVEEVGFDKIYREILNYGFSNVPKDLTISLGSFGSSPLEMARNFMVFSNYGK VIEPRLIDRIIDNEGNIAYSQEESSDLSTPQQSFLMVDMLRDAVQNGTGKRARVNGIELA GKTGTTNENIDAWFCGFSPSIEAVVWYGKDDNTAMGSGESGGIAPASAFSYFFERILTID PGLDRKFKIPEGVRSQVIEGEVIYYTDKSPLRYNPNKNQNGIIF >gi|197325098|gb|DS990368.1| GENE 791 809817 - 810509 639 230 aa, chain - ## HITS:1 COG:Cj1491c KEGG:ns NR:ns ## COG: Cj1491c COG0745 # Protein_GI_number: 15792806 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Campylobacter jejuni # 12 226 8 222 226 110 32.0 3e-24 MSPDLLEPLGSLTILIVEDDVIALDLLKAPLERRCRKILTANNGEEALKLFKNNVVDIVI TDINLEGKIDGITMVESMRKINSTFPVVFMTAYSDEEKISRIVELNSAYFIKKAVDLEEL FVLLLSINKQLCKEQMIDLGQGVFYRKRDKSIVKGYAIFELTERECRILELLIKAENFPV TYDEFRKKVWKGQQMTMDSLRMHINNLRRKTYYDLIKNHSRMGYKIVRTL >gi|197325098|gb|DS990368.1| GENE 792 810589 - 810888 234 99 aa, chain - ## HITS:1 COG:Cj1384c KEGG:ns NR:ns ## COG: Cj1384c COG4378 # Protein_GI_number: 15792707 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 1 95 1 96 104 120 63.0 5e-28 MSILVIGGDEIASIRAVLSNFGCKKVTHWDARKESINHKDIPQNTDCLVMLTNFLNHNTM RKFRNEAKKKEIPIICTKRSVSCLYCEFMKTFGKNCCNC >gi|197325098|gb|DS990368.1| GENE 793 811077 - 811526 629 149 aa, chain + ## HITS:1 COG:jhp0397 KEGG:ns NR:ns ## COG: jhp0397 COG0735 # Protein_GI_number: 15611465 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Helicobacter pylori J99 # 6 146 5 145 150 154 58.0 8e-38 MKKYKESLKTILDRLHLSIKKNNLKNSKQREYILKVIYEDGGHLSPEDIFIAIKKTCKNA SISSIYRILSFLEKEGFVHSIEVDKSGKRYEIASGLHHDHIICVECGKIEEFCNEEIEKL QIEVAQSYKAKLVGHDMLLYVVCESCLKK >gi|197325098|gb|DS990368.1| GENE 794 811548 - 812006 538 152 aa, chain - ## HITS:1 COG:Cj1370 KEGG:ns NR:ns ## COG: Cj1370 COG2236 # Protein_GI_number: 15792693 # Func_class: R General function prediction only # Function: Predicted phosphoribosyltransferases # Organism: Campylobacter jejuni # 1 143 1 146 147 127 42.0 6e-30 MQYYSYEMFKEDMKELILKIDFNPDGIVAISRGGLTMAHFLGIALDLRMVYSINAASFFN KVQQEVRISNIPELYGNQRVLIVDEIIDSGTSITKVKNILQEINSNIDFKTASIFYKPTA TFKPDFFLRETKDWVDFFWEVDIVKEIRERNL >gi|197325098|gb|DS990368.1| GENE 795 812016 - 813071 1034 351 aa, chain - ## HITS:1 COG:HP0654 KEGG:ns NR:ns ## COG: HP0654 COG1060 # Protein_GI_number: 15645278 # Func_class: H Coenzyme transport and metabolism; R General function prediction only # Function: Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes # Organism: Helicobacter pylori 26695 # 12 351 14 360 360 445 63.0 1e-125 MSKNEILKSFLDPKEALKLYDLDIFTLGKMAGAIREEYFGKKTFFNSNRHLNPTNECSDI CKFCGFSAHRKNPNPYTLNKEEALEQVEIAINNGALEIHIVGAHNPKLNLQWYLDLFKSI KEKYPHIHIKALTGAEVNFLSKISNKSYQEVLELMAENGVDSMPGGGAEIFDETIREYIC KGKVDSTRWLEIHGYWHSLGKKSNATMLFGHIESREHRIDHLLRLYHQQEKSQGFNAFIP LVYQKENNFLKVKNFPSGQEILKTIAISRILLPNIPHIKAYWATLGLNLALVAQEFGADD IDGTIQKEAIQSAAGSKSANGILKDELITQIKDAGFTPVERDSLYNEIKIY >gi|197325098|gb|DS990368.1| GENE 796 813326 - 813844 528 172 aa, chain + ## HITS:1 COG:Cj1189c KEGG:ns NR:ns ## COG: Cj1189c COG2202 # Protein_GI_number: 15792513 # Func_class: T Signal transduction mechanisms # Function: FOG: PAS/PAC domain # Organism: Campylobacter jejuni # 3 163 2 162 165 172 51.0 4e-43 MPTNELFLKDNTLITSKTDLKGKITYGNEDFIHYGEYKEEDFLNKPHSLVRHPQMPKTAF KLLWDSLKEKKEFFAFVCNLSKTGKTYWVFANVTPSYDDKGQVVGYYSVRRRPSKEGVET ISKIYSKLLEIEKTQGVNQAIQFTLDFLKENNITWDKFIIDLQNKGKTGGYR >gi|197325098|gb|DS990368.1| GENE 797 813841 - 814437 561 198 aa, chain + ## HITS:1 COG:Cj1190c KEGG:ns NR:ns ## COG: Cj1190c COG0840 # Protein_GI_number: 15792514 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Campylobacter jejuni # 1 198 2 199 459 132 38.0 4e-31 MKNLLIIAIILGIVGLALEAIFVGLSINLITFGILIILLIFIYFKSAKRLDFLQRILKIS ALWQQGKFEARIIHIKGDNDLCTFANNINSVIDNLEAFMREISTAIRCSQEGKYYRLAFP QGLNSAFAANIENINKALMKIEENAKDNLSNFLAKSLMDMSLGSQNENLTKISLDLDNDI QNMSIVDENVTSITTSAS >gi|197325098|gb|DS990368.1| GENE 798 814532 - 815263 588 243 aa, chain + ## HITS:1 COG:Cj1190c KEGG:ns NR:ns ## COG: Cj1190c COG0840 # Protein_GI_number: 15792514 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Campylobacter jejuni # 1 241 216 458 459 162 42.0 7e-40 MEIINDNSITIESFAQKSKDIDSVVEIISDIANQTNLLALNASIEAARAGEHGRGFAVVA DEVRQLAEKTHKATNDISIVVQTMQQEIASIQDNFKQVSEFANSTHNHIMHFNSIFSYME QTTKTLKEVFENLSNKFILSVSKLEHIVYKSNLYLSFNLKKQTCNFNEINPISKHLDDQE KIQEIHLDMPSLNNAKEKLIQNTNIALEELKKPLTKESVDTIIHTFHEIEDDSKKVINLL QEN >gi|197325098|gb|DS990368.1| GENE 799 815266 - 817290 1808 674 aa, chain - ## HITS:1 COG:jhp0847 KEGG:ns NR:ns ## COG: jhp0847 COG0210 # Protein_GI_number: 15611914 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Helicobacter pylori J99 # 5 670 6 671 676 666 53.0 0 MPLSKLNDQQREASLAPSGYNLIIASAGTGKTSTIVGRISYLLESGILPNEILLLTFTNK AAQEMLKRLELRFDSRIVKQIEAGTFHAVAYRYLKNKNSIILKQPRELKVLFKSLYDKRI FTHISQTPPYGANYLYDTFSLFQNATTSDDFLTWLQNRNSEQAPYAEIYLDVWEEFKGLK KEYHYADYNDLLLFYKEEILKDKLQFKEILVDEYQDTNPLQDSILQTLNPPSIFCVGDYD QSIYAFNGADISIIGSFKDRYPNGNIYSLTKNYRSTAPILNLANRVIEKNPRIYPKTLEV VKTQNFGMPTLLVYDELFLQYQGIANKIKLSNRPFRDVAVIFRNNSSADGIEASLREIGI PTRRKGGISFFDSKEVAYILNLCSLLYNPKDMMSFIHVLSHAKGIGNAMAKDIYEALLVL GEGNAIKGLLKPDQMIKEPYKKIVQNTQLGLFDEFFAMGNIERFSYLESDFKHNSILSHP KLTKEGAEFLDSLYLFFGSFGVNDKPAFLISQIIRLPIFKKVAQKLAKERSITKDGRINE EKYQESLERIERKIFLLRDLASHYQEIGRFLNAMMLGSSEMSEGEGVNLLSIHASKGLEF SEVYIVDLMEGRFPNKKLMSQSGSLEEERRLFYVAVTRAKENLYLSYARKDVMKNIAYEG SIFLYEAGLLHKGN >gi|197325098|gb|DS990368.1| GENE 800 817297 - 817689 534 130 aa, chain - ## HITS:1 COG:jhp1081 KEGG:ns NR:ns ## COG: jhp1081 COG1699 # Protein_GI_number: 15612146 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori J99 # 6 128 3 128 135 94 40.0 7e-20 MKGEKFIVKSHILGFEDVSEVELAEIDDGALAFLSMVGRDAELLLINPYKVREYSFEVPA GIQALLDMKADSKVKVFCVFVREKQTEIRINFLAPIILNYDNHTLAQVILTAKDYPNFGV AESIKDYIKE >gi|197325098|gb|DS990368.1| GENE 801 817852 - 820491 2542 879 aa, chain + ## HITS:1 COG:Cj0775c KEGG:ns NR:ns ## COG: Cj0775c COG0525 # Protein_GI_number: 15792113 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Campylobacter jejuni # 12 878 4 869 870 1140 62.0 0 MQDKTNTTYNPKEIEEQYYNFCEKSGYFEINGNAAIQKNQNFCIMLPPPNVTGSLHIGHA LNHTLIDIIVRYKRMDGYKTLWQAGLDHAGIATQNVVEKQLLAQGIKKETLGREKFIQKV WEWKEQSGGAILKQMRKLGSSPAWSRTRFTMDEGLQNAVKEAFVKLYNEGFIVQGKYLVN WCTHDGALSDIEVEYKENNGKLYHLRYFLEDSKDYIVVATTRPETYFGDTAVMVNPQDSR YQNLIGKKVILPLLNKAIPIIADSHVDMEFGSGAVKVTPAHDPNDYEVGKRHHLEQITIF DKNGILNEFAGEFAGLERLEAREKIIAKLQESGFIEKIEDYKNQVGHCYRCGNVVEPYIS KQWFLKKEVATKAIEKINANVSNFFPPQWKNNYNAWMRELRDWCISRQLWWGHQIPVFYC DSCNHQWASTKLQTKCPQCQSAQIHQDPDVLDTWFSSALWPFSTLGFGNGEWGEGTLWQK DDLKEFYPNSLLITGFDILFFWVARMLMMGEHFLSKLPFPDIYLHALVRDENGQKMSKSK GNVIDPLELIEKYSADVLRFTLAILCAQGRDVKLSNNQLEISKNFTNKLYNASNFLLLNT QNFPNLSEIGEPKTPLGKYMAELLSHTIKEMRGYLDSYRFNDGANALYRFLWGEFCDWGI ELGKADKDSIVELGAIFKESMLLLHPYMPFISDYLWHKLDGSTLEESGSIMIKNYPNFHY QNTQNFKTFELILDSIVSIRRAKTTIDLANQKIPKAYIKGNFILPQDFIQTFKNYVCKLA KVEELEITTKKMPHCVVDITQNLESYLPTKDIDLTPIITKLQKQLEKTQKEITKLQSMLN NEKFLANAPQQVLDGNQKALAEQQEKLQKIQLELNSLQN >gi|197325098|gb|DS990368.1| GENE 802 820488 - 821552 1003 354 aa, chain - ## HITS:1 COG:jhp0514 KEGG:ns NR:ns ## COG: jhp0514 COG0628 # Protein_GI_number: 15611581 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Helicobacter pylori J99 # 6 352 2 339 349 191 38.0 2e-48 MREASKGIYFFSAAFILTLIALLKLYSPFLMNILIAFLLFIATHSIFQVILKKIKSTFLT SLLMTLLLLVLCFVPIFYVAINLASFAGNIDLASLQKFFTDMQVKILITGKDFLEYLPVA LQQQINDLLLSVNSINWAEILKKALSVVAKISTNSAYFLSDAVFIVIFLFFFYYYGNALG RYCLEIIPIEKQQIKTLYDEVSAVISVVFYSSIVSMVLQGVLFGILMAFYRYDSILLGVF YGFASLIPVVGGTLVWLPVVCYELYLGNVTNAIVIALYSIIIIATLADNGVKPFVIAFIN RILIETPVKINEMLIFFAIIAGLSSFGFWGIVLGPAITALFIAMLRIYQNLYKH >gi|197325098|gb|DS990368.1| GENE 803 821552 - 822934 1194 460 aa, chain - ## HITS:1 COG:Cj0369c KEGG:ns NR:ns ## COG: Cj0369c COG0348 # Protein_GI_number: 15791736 # Func_class: C Energy production and conversion # Function: Polyferredoxin # Organism: Campylobacter jejuni # 12 460 8 454 458 468 53.0 1e-131 MEMQSRIKAHFYHKKRYWTYFITTIIVLCIPFIKIDGNQIFLLSFDHKQLHLFGVAFDMQ ELYLMPFLLILLFLLIFFLTTLAGRVWCGWACPQTIFRVLYRDLLETKILKLRKRMENRQ IEPDMSLGVNKFKKAIAFIVWVVLALIIAANFMWYFVPPSDFFAYIQNPLEHKYLYIFWL GIAIFLIADIIFIKENFCIYMCPYSRVQSVLYDNDTIMTVYDYKRGGVVFDPKGIKLWKK PEVPNAECTGCEACVKICPTHIDIRKGMQLECINCLECSDACTKVMAKLGKPSLISWTSP QAIEKQQKVRYMRFKTIAYLGALVIVLAGLLYMSSTKESMLLNINRSELYTIRENYRVEN SYVFLFQNTNHNGYEFYFEIEGNEMIKIKRPSKPFYIKPGEKLKQVVVLYTDANLAKDSQ KDTHIPLKIRAYALDSDEKIEIVRKSVFIYPPKDVMNKEK >gi|197325098|gb|DS990368.1| GENE 804 823111 - 823323 352 70 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224418443|ref|ZP_03656449.1| 30S ribosomal protein S21 [Helicobacter canadensis MIT 98-5491] # 1 70 1 70 70 140 100 2e-31 MPGIKVRENESFDDAYRKFKKQADRNLVVTESRARRFFEPMTEKRKKQKISARKKMLKRL YMLRRYESRL >gi|197325098|gb|DS990368.1| GENE 805 823492 - 823974 622 160 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418444|ref|ZP_03656450.1| ## NR: gi|224418444|ref|ZP_03656450.1| hypothetical protein HcanM9_04105 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1113 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1113 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 160 1 160 160 223 100.0 3e-57 MNVTDKNSSMWNLLSQSYDAQNNNANNNISGYSSPLKNDSVFGAQEISKTDSNLFSQENS FYTPSQIQDTLEISQELSTIQNFATNFSGDLKELGESMYENGLLNKEEKMGFDILSKLNP SLDSKTTQNLLNNSNLSDENRNLLANVDKKINAVRYFGGF >gi|197325098|gb|DS990368.1| GENE 806 824009 - 825112 1609 367 aa, chain - ## HITS:1 COG:Cj0930 KEGG:ns NR:ns ## COG: Cj0930 COG0012 # Protein_GI_number: 15792259 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Campylobacter jejuni # 1 367 1 367 367 506 71.0 1e-143 MGLSIGIVGLPNVGKSTTFNALTKTQNAQAANYPFCTIEPNKAIVPVPDKRLQELAKIVN PERIQHSVVEFVDIAGLVKGASKGEGLGNQFLANIRETEVILHIVRCFEDSNITHVEGSI NPLRDIEIIETELLIADMQTLEKRIERLTRMAKSGTDKEAKAMLEISQMLLEHIEQGNPV RSFQNKDERFFALDKELRFLTNKEIIYGANVDESGLSEDNKMVESLREYAKKNGSEVIKL CSKIEEELVGLSDEEQEEFLNELGIKESGLDSVIHLGFSKLGLISYFTAGVKEVRAWTIH RGDKAPVAAGVIHNDFEKGFIRAEVIAYEDFIKYGGEAKAKEAGAMRVEGKDYIVNDGDV MHFRFNV >gi|197325098|gb|DS990368.1| GENE 807 825122 - 826447 1234 441 aa, chain - ## HITS:1 COG:jhp0517 KEGG:ns NR:ns ## COG: jhp0517 COG0260 # Protein_GI_number: 15611584 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase # Organism: Helicobacter pylori J99 # 1 441 39 494 496 436 52.0 1e-122 MEFYGFEGEGSCLVSQSKKFFVGLEKYDYEFPNALSDAIANAICSLKKLKIKSISIEVEK EEEIQKICFGILLGAYSYEEFKGKKTKTTLKEIYLNSNKLDEKILQQRILESEILATSVN YTRDLVNTPPKQATPEYVAKYAEDRAKAVGFECQIYDEKFLKKEKMEAFLAVARASVHKP YLVHLSYKPKCAKEEKLPKFVFVGKGLTYDSGGLSLKPGDYMTTMKADKSGACAVIGILE AIAKLGIKAEVHGILGLAENMIGGDAYKPDDILRARNQKTIEVRNTDAEGRLVLADCLSF AGDLKPDFLIDLATLTGACVVGLGDYTTGIMGYNKKLKEEFAKVAFEVGELTGILPFNPY LKKLLKSEIADLCNIPSSRYGGAITAGMFLGEFVEESLKDKWLHLDIAGPAYVEKAWGMN PFGASGIGVCACVEFVKSKAK >gi|197325098|gb|DS990368.1| GENE 808 826737 - 827327 836 196 aa, chain - ## HITS:1 COG:Cj0928 KEGG:ns NR:ns ## COG: Cj0928 COG0586 # Protein_GI_number: 15792257 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Campylobacter jejuni # 10 165 13 168 198 204 69.0 1e-52 MEALFTQWIQEYGYIILFLWSILEGELGLIMAGIMCHTGHMTIPIAILVAGFGGFVGDQI YFYIGRYNKQFIYKQLKTQRRKFAFAHLLLQRYGWPIIFVQRYLYGMRTIIPMSIGVTRY SAKTFAFINLISAMVWAAITILLAYFFGEQLLALVNYGKEHYYIAIPFAILLGGGIYYYL HKVTQKVERKITGEKK >gi|197325098|gb|DS990368.1| GENE 809 827407 - 827763 502 118 aa, chain - ## HITS:1 COG:Cj1112c KEGG:ns NR:ns ## COG: Cj1112c COG0229 # Protein_GI_number: 15792437 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Campylobacter jejuni # 3 115 2 114 119 167 71.0 4e-42 MYKKLNEEEQRVILHKGTEAPFSGKYENFFDEGIYCCKQCGSALYESKDKFHSGCGWPSF DSCIEGAIREQLDKDGRRIEIVCAKCGGHLGHIFRGEGFTPKNTRHCVNSIALEFQGN >gi|197325098|gb|DS990368.1| GENE 810 827773 - 829269 1458 498 aa, chain - ## HITS:1 COG:alr0308_2 KEGG:ns NR:ns ## COG: alr0308_2 COG1410 # Protein_GI_number: 17227804 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase I, cobalamin-binding domain # Organism: Nostoc sp. PCC 7120 # 1 496 344 866 868 332 36.0 1e-90 MQKILPSAKDEIDPEVIVNEILIDAMKVVGEKFGNGEMQLPFVLQSAEVMKKSVDYLNEF LPKKTNTHKTTIVIGTVKGDVHDVGKNLVDIILSNNGFHVINIGIKAELEKFLEVIKKEK VDCIGMSGLLVKSTLVMKENLEELKRLGVTIPIMLGGAALNRNFVDEYCRPNYDGIIFYC KDAFDSVAAMQIIQSGDFSDITLPSQKGKSEDSRLEQRMAKKLEKLEEEKEIFRPTECEL TFSYQSYKPPFFGRKALKLSNDEIQSVFEFIDKDLLFKHRWGYSKLKKEEYLKLKEKELE PLFQSLKNEFIEKNIFDPVVLYGYYHTRTRIPDDKREGLILELSDCADFSNAESFLFPRS TKKPYLCLGDYFNKEGDICALHLVSSGLNLAPFEEKLYKDNQYHKYYLTHALGVELAEAL ADFVHQRVRRELGLGEKEGERYSFGYPACPDLALNEGLFNLLKPQEFGIILSETYQMSPE ATTSALIVPHKEAKYFAI >gi|197325098|gb|DS990368.1| GENE 811 829275 - 831212 2131 645 aa, chain - ## HITS:1 COG:alr0308_2 KEGG:ns NR:ns ## COG: alr0308_2 COG1410 # Protein_GI_number: 17227804 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase I, cobalamin-binding domain # Organism: Nostoc sp. PCC 7120 # 312 644 4 339 868 247 40.0 4e-65 MKTRLQEIIKKQVLIIDGAMGTEIQKKENVEWGKNAKGESLAGCTEALNLFSHEVVKEVY TSYLQAGANIITSNTFGVMEWVLAEYEMQEHSREIARIGVQLAKDCIKAHTPLENQKDAL FVAGSLGPGTKLPSLGHIDYDSMFLGYCEAVRGFKEANVDLVLLETAQDPLQIKAALHAV REIDENLPIMVSATIETTGTMLIGTDIATLFYILEPFEIFSLGINCGLGPDLAKKYLTEL SKVSKFPISIHANAGLPQNKGGITYYPMEAEEFSEIESDFLNIAGVALLGGCCGTTPHHI SALVAKTKGKIPIPSQGKYQPSIASLFGACELVQEPAPLLIGERSNATGSKAFRELLLKE DYEGALGVGNEQVKQGAHVLDVSVAFAGRDESKDMHELITRYATKIPLPLMPDSTQVNAL EIALKLIGGRCIINSANLEDGIEKFDKVASLAKKFGCVLVCLTIDEQGMCKTKERKVECA KRMMQRAIEIHHLREEDIIFDPLTFTIGSGDEEYFTAGIETLEAIAEIRELFPKAGSTLG LSNISFGLSKEGRVCLNSVFLHHAIKKGLSTAIVNVAHIIPYARLESEDIKVCEDLIFNV QKSPQVLYDFISHFEKKSGLGFEKKEEDLSLSTQERIQNISLKGI >gi|197325098|gb|DS990368.1| GENE 812 831222 - 831782 601 186 aa, chain - ## HITS:1 COG:Cj1210 KEGG:ns NR:ns ## COG: Cj1210 COG0586 # Protein_GI_number: 15792534 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Campylobacter jejuni # 1 185 1 185 185 151 48.0 6e-37 MQETIDLIVKYGYVILFLYSLGGGFVALVGAAVLSYAGKMDLMASIAVAVVANFLGDLLL FYLARYQKQGMMPYLSKHRRKLAYIHLLMRKYGSIILIVKKYIYGLKTLVPFAVALTNYG FMKFSLYNALGAILWGISIGLFGYFLGEVILQGMDLLGQYPYLAPIFILILFGGIWIWLK KVSTKK >gi|197325098|gb|DS990368.1| GENE 813 831870 - 832592 704 240 aa, chain - ## HITS:1 COG:Cj0827 KEGG:ns NR:ns ## COG: Cj0827 COG0101 # Protein_GI_number: 15792165 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Campylobacter jejuni # 1 240 1 241 241 154 38.0 1e-37 MIKVAMRIAYYGGEFFGFQRQKDKITICGVLEEVFRSVGIFDVCMGSGRTDKGVHASAQV ISVSIPEFHRDLQRLKQLLNVKLYPWIKIKQIWQVENEFHVRFSVKRRGYCYVLSQKYSP FLALFSHFYPLKNPFLVQESLDIFRGVYDFSAFMKNGGSGCEGSVREIFHTKLLKRGEFY LISFWGNGFLRSQIRLMVGFLLEIDRGNLGIEDLKKQLLGEKIFSIPAPPNGLFLSRVDY >gi|197325098|gb|DS990368.1| GENE 814 832593 - 833618 859 341 aa, chain - ## HITS:1 COG:HP0362 KEGG:ns NR:ns ## COG: HP0362 COG0795 # Protein_GI_number: 15644990 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Helicobacter pylori 26695 # 3 341 2 345 345 240 42.0 3e-63 MRIKNYLFHSFAQIFFPIFFVLFFIASVVIFIRIAGVTFVVQISFFELLSLYFYTLPLMI FFVIPLSFFVACTLSLSRLSFDYELPVLFALGMNPSKIIKIFFPIAALVSFSLFILSLVL TPLSDTAYRQFLEERKNSININLQAGEFGQKLGDWLVYVQKSKEDSSYENIVLLSFAKEG GMIFSDNAKIVNQMGVMEAILEKGSIYRPKEDFVEKILFDTLIIRSSITAIDEVDLGVIG YWKRAFYENDRQKKTLRNLSMYVMMSCFPLVSLFFFPLLGVKNPRYQKNYTILQAMGVIG IFYALMYLFASYLPLLGMFIFPIIWLLLGYLLFERVIKKYY >gi|197325098|gb|DS990368.1| GENE 815 833695 - 834417 427 240 aa, chain - ## HITS:1 COG:aq_1601 KEGG:ns NR:ns ## COG: aq_1601 COG1989 # Protein_GI_number: 15606720 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases # Organism: Aquifex aeolicus # 6 229 10 236 254 121 38.0 9e-28 MEIVFIFIIGAIFGSFANVLIFRIPQNMSIILPFSFCPRCKKSLGFMDKIPMVSYLILGG KCRYCGEKIPKWYLLGEVLGGIFGVFSFYCFGNLGIVGFFLFLFFYVLSVIDWRFLEIPD CLNFLNLALAVCFGGFLGESFFIENLLIESCLNALLFMGIASFLRLFVGSLLQKEVMGEG DIIVFGTLGASLGVVFGGLSIVIGSCYALVWILLSKKSMLPFVPFLFLGFCSAVLLRYVL >gi|197325098|gb|DS990368.1| GENE 816 834469 - 835071 375 200 aa, chain + ## HITS:1 COG:Cj1404 KEGG:ns NR:ns ## COG: Cj1404 COG1057 # Protein_GI_number: 15792722 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Campylobacter jejuni # 3 165 2 162 181 128 42.0 7e-30 MQKIAVFGGSFDPPHLGHLKIIQTIFNSLEVERLFIVPTFLNPFKSHSLFSPQKRLEWIK ILTQDLASPITLLDFEIQQNKPTPTYETINFIQQTYKPKKIYLIIGADNLENLPKWHHYE KLKNQVEFVIIPRLHYKIDSDFKTLPMQPISISSTQIRDSLQKRDFKILESIPKAITQDI LKEFNCKKIDNPLSNSSYKS >gi|197325098|gb|DS990368.1| GENE 817 835023 - 835364 345 113 aa, chain + ## HITS:1 COG:jhp1309 KEGG:ns NR:ns ## COG: jhp1309 COG0799 # Protein_GI_number: 15612374 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Helicobacter pylori J99 # 9 106 5 102 113 97 52.0 4e-21 MQENRQPIIKFIIQILEDKKGENIEVFDLKNTDYFVDYVIITTAFVDKHALALLDSLKKE LKQKNETFFHIDEENPEWIVADLGDIIVHIFTENQRKKFNLEEFLSKMAAQKN >gi|197325098|gb|DS990368.1| GENE 818 835432 - 836184 834 250 aa, chain - ## HITS:1 COG:ECs2148 KEGG:ns NR:ns ## COG: ECs2148 COG4221 # Protein_GI_number: 15831402 # Func_class: R General function prediction only # Function: Short-chain alcohol dehydrogenase of unknown specificity # Organism: Escherichia coli O157:H7 # 1 246 1 247 248 312 61.0 3e-85 MVVLVTGASVGFGREIARIFAKNGHKVIALARRKEKLESLQKEIGNCAIIACDICDREAV KLGLKSLPKEYQEIDVLVNNAGLALGLERASECNIEDWDQMIEVNIKALTYITRLILPQM VERKSGHIITIGSIAGRYPYPGGNVYGASKAFVRQFALNLRADLAGTNVRVSDIEPGLAS DSEFSLVRFKGDMKQVEALYRDSNALKPQDVAEAVYWVATLPKHVNINTLEMMPTSQSFA ALNVYKGDKA >gi|197325098|gb|DS990368.1| GENE 819 836201 - 837499 1269 432 aa, chain - ## HITS:1 COG:HP0275 KEGG:ns NR:ns ## COG: HP0275 COG0457 # Protein_GI_number: 15644903 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Helicobacter pylori 26695 # 44 431 28 429 430 132 26.0 2e-30 MLLKNKILIILVSGVCLFLVLVGCLPRIKIDFSNNTYKEIENLEDIYIVQAYAALDSQDY KVAQENLTKAYELTKNEAYLKEIIGILILKKEWAEAKKIVLEYQRKYPKDREMQQMLIEI LGNMGDFKAANQEVQKLLKQDRNAQNLEIASSIYFLQNDYQKAIAYLRESYLLSGNEQIA NKLASIYLLFLKDRNKAIGVYEEHIKKYGISQNIGERLALVYLEDKKVLDAARIYQNLYK ATHDSKYARFALEIYFKGNYFSQARKFLEQNPNIQSRDEFLLEIYRLTKEHKKAIALLQK LYVENGNVDYLALEAMLIYENAQNRNNIILLRQVTNKFEEVVKKSNNALYWNYYGYLLID HNLDIKKGVQCVQEALKQEPNNPYFLDSLAWGYYKLSDCKNAQTIMQKITQEDLQKEKEI YEHFRLIQQCKI >gi|197325098|gb|DS990368.1| GENE 820 837483 - 837860 378 125 aa, chain - ## HITS:1 COG:jhp0259 KEGG:ns NR:ns ## COG: jhp0259 COG0727 # Protein_GI_number: 15611329 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster oxidoreductase # Organism: Helicobacter pylori J99 # 7 125 4 125 132 104 50.0 4e-23 MLKEEGFLFDFDFTKCQECGGKCCKGESGYIFVTPNEIQKIAQSLQMDFEKFCLKYVKKV GYRYSLIEKKEEKGEGYACVFFDEVKGQCQIYENRPKQCVKFPFWDCYKENFETLIEECI GVIKK >gi|197325098|gb|DS990368.1| GENE 821 837854 - 838546 595 230 aa, chain - ## HITS:1 COG:HP1504 KEGG:ns NR:ns ## COG: HP1504 COG4123 # Protein_GI_number: 15646113 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Helicobacter pylori 26695 # 1 229 6 234 238 161 39.0 7e-40 MQIYQPKDGYCYNSDTLFLYDFALKYFKPKKQVLEVGSGSGVLGLLCAKEVEMDLTMIEK NPKMLELCQHNLRINGVEAKLMGGDFLEYNFLDLKFDYILSNPPFYHNGVIRSKNKDICL ARYEENLPFSSMVKKINALLKPQGEFIFCYDSRESFKVFGILFEFKIRPIIVRYVHPREN EEATLLLCRAKKNSKSQMQILSPLLTHQDNEFSKEVQEIYKRANTWSIKC >gi|197325098|gb|DS990368.1| GENE 822 838547 - 839047 294 166 aa, chain - ## HITS:1 COG:no KEGG:WS1755 NR:ns ## KEGG: WS1755 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 14 163 17 165 168 80 33.0 3e-14 MVSYLNRRKFLIFLFLVAFGGCAKPSLSLEKTTPKIIFFSTKDFRFYDTGLIKSYSNGDI SLEIFNAGHLLLEFYVSKNRICLNQQCYATASLIRKLFGNDGLLELDFKAILEGREIFMG KNKKILKEGYEQRINDANNQVVYKVTTGTISFKELKSGFSLIISGI >gi|197325098|gb|DS990368.1| GENE 823 839014 - 839139 72 41 aa, chain - ## HITS:1 COG:jhp0775 KEGG:ns NR:ns ## COG: jhp0775 COG3018 # Protein_GI_number: 15611842 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori J99 # 2 38 162 198 201 72 83.0 3e-13 MAVIRNAEIIETIYKDGLCQVNMELKLDGKRWYRILTGENF >gi|197325098|gb|DS990368.1| GENE 824 839342 - 839758 611 138 aa, chain - ## HITS:1 COG:jhp0775 KEGG:ns NR:ns ## COG: jhp0775 COG3018 # Protein_GI_number: 15611842 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori J99 # 41 135 58 152 201 114 64.0 5e-26 MATKKTISLVLAGMLFGTSLFAAQVNTATTTSEVSPIGNVSLQANRNSNVPTNLQGIEVG GDDIVIPNAPIITPSSIIEISAIGMGVAPESTVSPAQALALAKRAAIVDAYRQIGEKMYG IRVNAQDTVRDMVLKLAS >gi|197325098|gb|DS990368.1| GENE 825 839820 - 841736 1798 638 aa, chain - ## HITS:1 COG:HP0465 KEGG:ns NR:ns ## COG: HP0465 COG2604 # Protein_GI_number: 15645093 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori 26695 # 1 615 1 607 631 376 36.0 1e-104 MGIIEFLEKSSCEEIEAFCAQRFEENLKFFQVNYPSLFTALQEPSKEYQLYIGKEGLNII NTLNNSLMFPLDKGYSTMLLVHKNCTFNPPINEKWNRVYGNDIAIMNEDFPYSSILVNGI LDFVAQKGAVDSYHLPSDFLPNLSLFGLGGGIFLQALVEKYNKFNNFFIFEESLDLFRIA CFFVDFATLFYKTENKGGYIFIESLMKKDYALSFFLMRRISTSVMRLELMMYQTPLNISV RSIVYELHLQSLRGWGTYEDEMKGIVNKKSFPLSPMLVEPKRINAPICVIANGPSLDFLL PFIKANQNKMILFSCGTALKPLLAAGIKPDFQIEIERHHYLVDVLREAPLDDIPLLCATV LSKEAKELAKEVYLFERDGSSAANLNEPKFKVKFTAPLVGNAGASLASYLGSDVILCGLD CGYKKGAKKHAKNSYYGEETEEIPQGAYQVRGNFSEDIYSDALYSLSRNALEEAFRSLKP FNILNLNDGAYIQGATPIHCEDFELKEINKKEALEQLKSLFKDSKEEKFYTKDSQLYIFE ILAFKNTIGDLFKVKVSNKKSLFSAVDKIFEAIAQTSQKNAFIGILFGGTLSHFLYHLVL GSLHLPYDNMEELWKKAGELYNKAMEKMVENLRETILS >gi|197325098|gb|DS990368.1| GENE 826 841870 - 842424 613 184 aa, chain + ## HITS:1 COG:BH2056 KEGG:ns NR:ns ## COG: BH2056 COG3963 # Protein_GI_number: 15614619 # Func_class: I Lipid transport and metabolism # Function: Phospholipid N-methyltransferase # Organism: Bacillus halodurans # 4 182 9 183 187 89 32.0 3e-18 MLLEFLKHPKHTGSLYSSSQALSQAMINNIDLQNAHYIAEIGPGLGAFTQKILNLKPKES RYFAIEINPHFVKKLQEKFPNIEIEHKNANRILSIMRSKDIQHLDAVISGIPWSLLKSKE QDLLLKNIHQALKKGGSFSTFAYVLPTPKTLSFKKKLHKYFSQVKTSPIIWNNLPPAFVY YCKK >gi|197325098|gb|DS990368.1| GENE 827 842493 - 843422 1040 309 aa, chain + ## HITS:1 COG:HP0742 KEGG:ns NR:ns ## COG: HP0742 COG0462 # Protein_GI_number: 15645362 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Helicobacter pylori 26695 # 1 308 10 317 318 440 70.0 1e-123 MQNFKIFSGNAHREFSEKVAKSLDVELSNAEITRFSDGEINIRLCESVRGKEVFVIQPTC APTNDNLMELLIMIDALKRSSADSINVIMPYFGYARQDRKAAPRVPISAKLVADLLQCAG ITRLITMDLHAGQIQGFFDIPVDNLYGSIVLKNYVTSKNFPNPIIASPDIGGVARARYFA KLLGLEIVIVDKRREKANESEVMNVIGNVEGKNVILIDDMIDTAGTIVKAAEAFKKNGAS SVIALGTHAVFSGPAYQRIQESSLDEVIVTDTIPLKEKIEKIKVVSVAPLFAEVIRRINH NESVNSLFA >gi|197325098|gb|DS990368.1| GENE 828 843394 - 843963 707 189 aa, chain + ## HITS:1 COG:SPCC553.04_2 KEGG:ns NR:ns ## COG: SPCC553.04_2 COG0652 # Protein_GI_number: 19075269 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Schizosaccharomyces pombe # 32 188 98 249 251 173 54.0 1e-43 MKALIPFLLKFFLCCFIFGASLNAAESKKIQAILETTSGKITLDLFPEAAPKAVENFVTH INNGYYNGTIFHRTIRKFMIQGGDPTGTGSGGKSIWGKDFEDEIAKGYAFNRAGILAMAN SGPNTNGSQFFITTTRTPHLNGLHTIFGEISKDNQEESFQTLRKIEYSPTNSQDKPLKEQ KIIKAYIIQ >gi|197325098|gb|DS990368.1| GENE 829 844083 - 845402 1628 439 aa, chain - ## HITS:1 COG:no KEGG:WS1237 NR:ns ## KEGG: WS1237 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 107 381 123 387 391 126 38.0 2e-27 MNNMSIKENYASYASSIAFLKEIQKNWTPQNDKNETFEAALNQAESLEKQEEFQTIITQF QENENPLPIDTQTSKDNLEYLQESEASEFLVSDEKKPKNSLFDFENKASKFLTLQDEISN QETTLPKNQEKEELILNNQRNSFMGDFFEKTLVQTSPKAPQNISEEIKNAYNPLEVDAEQ GVGENMISFIDEVSGKKVAIPLNEANAKKLNEKFGSLEAASDYVKGWYYDAAYGMGYLKG DVDGDGKISLEEGIHLNSLVSLKDGQYHSISEQIPGSTDEQMKFLEQVGFIDNLGDYINH SISQDSNLDGALNLNEIMGDKNEIMLFQTNGDSQSLDIFVIQKFNLEVENIEESLNNILL NLGVKEEETKEPKQEEREEEKDEVKETQAKIATNDEEIQEWLEVARNLQDENYLNSLDLF ERENWLKSDTILQNLLLNV >gi|197325098|gb|DS990368.1| GENE 830 845555 - 846205 353 216 aa, chain + ## HITS:1 COG:jhp0595 KEGG:ns NR:ns ## COG: jhp0595 COG1573 # Protein_GI_number: 15611662 # Func_class: L Replication, recombination and repair # Function: Uracil-DNA glycosylase # Organism: Helicobacter pylori J99 # 10 204 9 199 209 88 34.0 1e-17 MQTLHQALLLQKLYLLKSIGFDYYDLQFQKPLQTQFPSQNQKNLNQAIKECQLCPQKLSQ PHIGLCNPHSKLLFLTITPLLDLQTRFVSKGALMLKKIIENVFALPLQQVSILSLLKCEI PKNTQEECTKNCMGYFLKQLEFSQSKTIVILGEEVYNALTQDKTPYKNIQGKLFKWNHLK LFPTFSLAQLLRQPELKIQAHKEFLTLKKDLYETNQ >gi|197325098|gb|DS990368.1| GENE 831 846189 - 847418 1214 409 aa, chain + ## HITS:1 COG:jhp0718 KEGG:ns NR:ns ## COG: jhp0718 COG5659 # Protein_GI_number: 15611785 # Func_class: L Replication, recombination and repair # Function: FOG: Transposase # Organism: Helicobacter pylori J99 # 25 402 33 417 429 213 33.0 5e-55 MKLINKIFLLWLLPSLIFASGKYPSPLPTPSAEVLNIETQKCNTSCLEELLEQGQVFSFI ANFTQNNQNQTLLESLNTLMSTLEISQIPYFTDSQKSFFNIALLFSRKDIGAYSASTTNV ILSYLLHQNKLFNFEIFDSKSESAQDLQEAINTIHSKGYRQIIAILTYNGANNLNTLNIQ TPIFIPSVHSSQITTNPLPNIIYGGISYEKQIQKLSKHNSQIKAVSFYDSSYIGDQIHQS VLKYNPDIAYSTAFNLKDNSNFTKTAGKLKSLLKHSRIFLNTPVINSSIILSQLTYYDIA IEGIYSTQINYSPTLLSITQPKDRKNMYIANSIQTLDSLLSEETQMLNADLKYDWINYAT AFGIEYFYRKNVPSAKRYFKETIKDNQVQYEIEILSPINNRFVESDASF >gi|197325098|gb|DS990368.1| GENE 832 847405 - 848076 310 223 aa, chain + ## HITS:1 COG:no KEGG:WS1298 NR:ns ## KEGG: WS1298 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 2 220 20 224 224 94 30.0 4e-18 MLPFNLKIIQKRNYKNLRMSFRDSSTLLISAPKHFSKKKCLEFLEQNQNWIEEQQQLWNQ RLNLKLPNHQIFLFGEWQDIQDNAIQTHWEECIHSNPTPKTKKALIQFFQNKLDSYLQVQ IPFFSTQMKLFPNKILYGKSYKQLACCYHKTKNLRFSLRLALMPRWLINSIIIHELAHIR YPNHQKDFWNLINTYDQNPQKIHIWLREYQDLLLLLHHKIFKA >gi|197325098|gb|DS990368.1| GENE 833 848073 - 849011 906 312 aa, chain - ## HITS:1 COG:aq_638 KEGG:ns NR:ns ## COG: aq_638 COG0583 # Protein_GI_number: 15606065 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Aquifex aeolicus # 10 308 1 297 303 80 28.0 3e-15 MNCIKEAKMLYDLTKLKTFIIVVREKSFSKASMKLGISQPAITQQIKYLESYFNTKLIVR KKSGVSLTKEGEKIFNIALKIERNLCAYRREFVHNIRYNNTIEIVCSPVIEKFILPKIFP KLTREIYPKIHYYAADSLRAIEDLQDSCKENTKIALVESPIFKENIIYREWLEDEIVLVS TKPLPRIIKVENLFSYEWVDLILGDGEFTAIKNYLSKLDINTNNFNVVAQFETYEKIKEF LFQESKEKNYMTFLPYLHIKEELQNKTFYYTKIRGLNLKRKIYLAVLKEDRSHSMIENIC DFLMFDTKISLY >gi|197325098|gb|DS990368.1| GENE 834 849136 - 851244 1884 702 aa, chain + ## HITS:1 COG:Cj1101 KEGG:ns NR:ns ## COG: Cj1101 COG0210 # Protein_GI_number: 15792426 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Campylobacter jejuni # 5 701 3 689 691 571 51.0 1e-162 MQEKFLNQLNTSQKQAVTTIEGALLILAGAGSGKTKTITTRLAYLIDEVGIPPSNTLTLT FTNKAANEMQKRALNMLKKSTSHPPLLCTFHKFGLLFLKFYISLLGRKINFILADSDDTK KILKELNCDLAPLPLIISEISRYKNSQITPQEALKNAHNELYKHIAKVYLNYQETLLQNN MVDFDDLLLLPIEILKSNPNVATEISQKYQYIMVDEYQDTNDLQYQLLKYLCTTHNNICV VGDDDQSIYSWRGANIQNILNFSQHFKGAKTIKLEENYRSSKSILNAANHLISNNKERLG KTLKSTLDEGKPIEVLHSYDEQEEAKNLSKIIKKLLQNGINPKDIAILFRLNALSRSLEE GFNRERIPYVLVGTIRFYERSEIKDVISYFRVLTNINDDFSLLRIINKPKRGIGKTTLEK LKSLSQIHHCSIYELFSNQSPQLLQQEISKKTYNTIWEFFKTIKELQDLQAQSSLKFLDD FEEKIGLCKALSQNSEEVDRVSNIEEFYGLYREYVKQNPLMELEDFLNELALRSDQEDTE LRNEQKGVEGVSCMSVHSSKGLEFDYVFIIGLEEGFFPMAREDTNLQEERRLGYVAFTRA KKELYLSYVDSRFYRGNRTSLYPSRFLAESKILAKENFLNQNTTDISKTAYEIGFQRGDC VMHKIFGAGRITEITKSGQEIKLKINFGGLLREILSGYVTKV >gi|197325098|gb|DS990368.1| GENE 835 851246 - 852061 782 271 aa, chain - ## HITS:1 COG:Cj0205 KEGG:ns NR:ns ## COG: Cj0205 COG1968 # Protein_GI_number: 15791592 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Campylobacter jejuni # 15 266 1 252 267 246 59.0 4e-65 MLESLYFLCKTRLFMDLIYAIILGIVEGLTEFLPVSSTGHLILTSKLLGIQQDTFHKTFE VMIQLGSILAVIFVFWERLFKNSLELWVKLAIGFLPAGILGFLLYDLIKMLFAPITTSIM LIVGGIAFIVIEIFYKEKEHHTKEIAEISYKQSFLIGIFQALAMIPGTSRSGATIIGGLL LGCNRKVATEFSFLLALPTMIIASGYSAYKNYAVFNADNLLVLGVGFVVAFLSALIAIKL FLGFVSRFNFIPFGIYRIILGIAFLFYLEVF >gi|197325098|gb|DS990368.1| GENE 836 852357 - 854453 2252 698 aa, chain + ## HITS:1 COG:Cj0755 KEGG:ns NR:ns ## COG: Cj0755 COG4771 # Protein_GI_number: 15792094 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferrienterochelin and colicins # Organism: Campylobacter jejuni # 26 698 20 696 696 874 63.0 0 MFILNKVRYSSVVLSLILSTIGVNATEEYRLDTSVVSASGFSQDIKEAPASISIIKKEDL ENKAYRDIAEAIADIPGVDLFASKGKTGTYQITMRGITGYTLILIDGRRQSVGGDVGPNG FTEITSSFLPPISAIERIEIIKGPMSTLYGSDALGGVVNIITKKSPEKWGLSVQTEALFQ ADSQWGNLYGTSVYGSGPLIKDKLSLTLRAREFYRESSSVSYSEPNGTIIDASQAQSPTR ANNHNFGFKLDYLANPQNLLTLDVDYSQSVFDNANGQLGTLTKPLNDTGALTGGYTKTMQ VDKLVTYLTHKGTYENFVLDSGIQYNRVSNDGREVVGLATQPYLGENRDILAEDIILDTK AVVPLGERNLLSVGAEYRVEKMQDKIANPTKFDQYLLGVFAEDELSILDNLNFTLGARYN HHEIFGDNLSPRGYLVYNPTDSLTLKGGVATGFKAPTPNRLIAGYYNFSGQGRFPSYGNP NLSEETSINYELSAIYNQDSHYISLTGFLTDFKDKISSMTINNGENISGVGICTYERCSQ AINHGEVRYMGVELAVGFKILEKINIDTSYTYLDSEVRESSTKSTIGKPESDSLKHNFIT KISIPFNKFTPYLKGQWQGNRYTGGDPVIGEYYKNIFLMTTGGTYAFNDSWKLNVAIHNL LDKKFTDNFVGNPVDGYVSQYNRIEEGRRFWVSLTGNF >gi|197325098|gb|DS990368.1| GENE 837 854746 - 856167 1953 473 aa, chain + ## HITS:1 COG:Cj1037c KEGG:ns NR:ns ## COG: Cj1037c COG0439 # Protein_GI_number: 15792364 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Campylobacter jejuni # 4 467 6 473 481 608 66.0 1e-174 MFRRILIANRGEIAIRIIRACNDLNIESVAIYSHADRDSLHVKMATHTYAISEDPIKGYL DPDRIIEAAKATESEAIHPGYGFLSENALFAKKVKEAGLVWIGPESEVIAKMGDKNAARN LMIQNGIPVVPGTEPLNKLSLYEIQKIARKIGYPVILKASSGGGGRGIRVVQEESELENA FNACKREALTFFKNDDVFMEKYIQNPKHIEFQILADNYGNVIHLLERDCSIQRRHQKLIE IAPCPTMSADLRRRMGVVAVAAAKAANYTNAGTIEFLIDDSNNFYFMEMNTRIQVEHGVT EEITGLDLIGRQIRIAYGEILDLSQNDITAQGFAIEARINAEDVHNDFIPNPGTITAYYP ALGPFVRVDSYIYKDFVIPPFYDSMIAKLIVRATSYDLAVNKLKRALSEFKIRGVKTTIP FLINICNDKDFKRGIFDTSYLENKLPSLMPQETSDESDLVAAIAVALTSQFEE >gi|197325098|gb|DS990368.1| GENE 838 856245 - 856379 231 44 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224418476|ref|ZP_03656482.1| 50S ribosomal protein L34 [Helicobacter canadensis MIT 98-5491] # 1 44 1 44 44 93 100 2e-17 MKRTYQPHNTPRKRTHGFRVRMQTKNGRKVINARRAKGRKRLAV >gi|197325098|gb|DS990368.1| GENE 839 856401 - 856727 122 108 aa, chain + ## HITS:1 COG:SP2042 KEGG:ns NR:ns ## COG: SP2042 COG0594 # Protein_GI_number: 15901863 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Streptococcus pneumoniae TIGR4 # 4 108 7 113 123 65 34.0 3e-11 MITLKSKKDFDIVYKSPKKWHNPYFILFFKENLKSSRIGFCVSKKVGNAVCRNFVKRRLR NLYRNSMSNLISGDMVLLAKSGLDKAPYSTLQSSYNHALMRLKLLQTG >gi|197325098|gb|DS990368.1| GENE 840 856736 - 856945 194 69 aa, chain + ## HITS:1 COG:SA1613 KEGG:ns NR:ns ## COG: SA1613 COG0759 # Protein_GI_number: 15927369 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 2 65 1 64 85 58 39.0 3e-09 MLKRFFLFLISFYQRYISTLFGPKCRYYPSCSEYSKQVFEFQNPIIAFLKTFLRVLSCNQ FFQGGISYP >gi|197325098|gb|DS990368.1| GENE 841 857296 - 858906 1529 536 aa, chain + ## HITS:1 COG:HP1450 KEGG:ns NR:ns ## COG: HP1450 COG0706 # Protein_GI_number: 15646059 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Helicobacter pylori 26695 # 5 532 1 547 547 509 51.0 1e-144 MLNKLDNLNSQTRIIIAVVLALAFFVPYSYFYAPKPQENNATATSSIQTTQNLPITQEAK PNPTQESAQLSTTQEIITTINGENFEYQIDRLGRITQVTLKEEKYHKDAKNLELFSNDIA NQNNPKILEIRFADSMLNQQAFNTPYQTSATNIELKDKPQSLTLTQKLENFTLTKTITFH PNGLYEVKVEIPQNYTYFISPGMRPSAENDSYVFKGVIIKEQDGTITTIEDGDSSGQSNF TNSSILAAVDRYYTTLFFSQSNNLNAIVLSNAEENPMPFLSANGNIELSGYIGPKDYRLL ESINPNLTEVVEYGIITFFAKPLFLLLETLYDWCGNWGWAIILLTLIVRVVLYPLTYKGM VSMQKLKELAPKMKEIQQKYKGEPQKLQVHMMELYKKHGANPMGGCLPLLLQMPVFFAIY RVLYNAIELKGAAWLLWIQDLSVMDPYFVLPILMGITMYLQQHLTPTTFNDPIQEKIFKF LPLIFTIFFVTFPSGLVLYWFVNNIFSILQQLLINKALERKKAREIAEHKKHKVEK >gi|197325098|gb|DS990368.1| GENE 842 858903 - 859598 686 231 aa, chain + ## HITS:1 COG:no KEGG:NIS_0882 NR:ns ## KEGG: NIS_0882 # Name: not_defined # Def: hypothetical protein # Organism: Nitratiruptor_SB155-2 # Pathway: not_defined # 3 230 6 245 246 237 55.0 4e-61 MKKIEAATLEDALIEASKLFNCSIVDLEYEIIQNPQKGFLGFGKKNAIICAQPKTKQTPI EQTPTPKTQAISQKESPKDLNQISIQVQKELQELLQLLPYSINEVIVKPYDENTLYIKID GEDSALLIGKEGYRYKAFSYLIFNWINHIYGLMVRLEIAEFLKNQEEMIANHLIPVIENI KTYGKAQTKPLDGVLAHIALKQLREQFPDKYISFRINQEGQKYIIINEFQH >gi|197325098|gb|DS990368.1| GENE 843 859582 - 860967 1368 461 aa, chain + ## HITS:1 COG:HP1452 KEGG:ns NR:ns ## COG: HP1452 COG0486 # Protein_GI_number: 15646061 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Helicobacter pylori 26695 # 5 461 12 461 461 351 45.0 2e-96 MNSNINQTIVAPATTYGKSSLNVIRLSGQDSLLIASKLAKVNPNHFKVRYAKLTKIYFQN GELLDECILIYFKAPHSYTTEDVIEFQCHGGTFIAQSILEECIKLGARLAKPGEFTKRAF LGGRIDLSQAQAIAKLIESSNANAHKMLMRHLNGEMYSFCENLRKNLLTLLAHSEVFIDY ADEALPQDLMENLLNRLDSTLQTLQNLLEQSIQKKSLFEGYRLCIIGKPNVGKSSLLNAL LHEDRAIVSDIAGTTRDSIEENFLLEGHLLRLIDTAGIRQSQDIIETKGIERSLQKAEQS DILIALFDSSRPLEEEDLKIIEILKTYQDSKKIIVLLNKTDLKGSFDTQILAPFNPLNLC LKDDNLASNNSLLSHFKNHLISLLNSQESSQMLLLVSQYQFQAIQACIQALYDSKLPLEN GELELFSFHINEALKALASITKPYEYSQMLDVMFSDFCLGK >gi|197325098|gb|DS990368.1| GENE 844 860993 - 861556 522 187 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|313142013|ref|ZP_07804206.1| ## NR: gi|313142013|ref|ZP_07804206.1| predicted protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 187 1 187 187 314 100.0 2e-84 MLIKVNGMMMRIRTQVFVLVGVLIVSGSLAAIFWGRLFALSFIFAFLSFLVIVGFTCLAQ KNKISRLIRGSSKEELEALANLYQSKEDKEEEFWDENAPQISEEEFVKECKQKGRKFWRG FSKDASKVGFKMFFLPLRLLAYALFVVLFLIFLKKGWLDFVGFFSGLILANIVVVLVLQF GFLKTKS >gi|197325098|gb|DS990368.1| GENE 845 861519 - 861815 415 98 aa, chain - ## HITS:1 COG:no KEGG:Abu_1008 NR:ns ## KEGG: Abu_1008 # Name: not_defined # Def: hypothetical protein # Organism: A.butzleri # Pathway: not_defined # 1 98 1 102 102 114 54.0 1e-24 MENKDSTQKPKYNDAILAYSNATLGISMVVAVLIGVGIGYGLEALFGYRWLFWLGVIWGV LAAILNVYKAYKRQKRELDELSKDPKYAYQSKWDDDED >gi|197325098|gb|DS990368.1| GENE 846 861805 - 863124 1803 439 aa, chain - ## HITS:1 COG:HP0306 KEGG:ns NR:ns ## COG: HP0306 COG0001 # Protein_GI_number: 15644934 # Func_class: H Coenzyme transport and metabolism # Function: Glutamate-1-semialdehyde aminotransferase # Organism: Helicobacter pylori 26695 # 7 434 4 426 430 607 70.0 1e-173 MEILNHLNSINDFNEAKQVIPGGVNSPVRAFKSVGGTPPFIKRGEGPYLIDEDNNTYIDF VQSWGPLIFGHCDKEIEAVVIETIKKGLSFGAPTTLETALAKEVISIYEGIDKIRFVSSG TEATMSAIRLARAYTKRDDIIKFEGCYHGHSDSLLVSAGSGLATFGSPSSPGVPEDFTKH TLVARYNDIQSVESCIQISKQKGKGIACVILEPIAGNMGLVPAKKEFLESLERLCKQEGI VLILDEVMSGFRASLNGSQNFYGVNGDLVTFGKVIGGGMPVGAFGGRSEIMNLLSPQGSV YQAGTLSGNPVAMSAGLVALKKLKNNPEIYNELELLALRLTEGLKNIAAKFGITLQTCVR GSMFGFFFNQNPVENFEDALKSDTELFGKFHQGMLEKGVYFAASQFETGFICVGMNEVMI DEVLSKAKEVFLEIGAYGK >gi|197325098|gb|DS990368.1| GENE 847 863135 - 864307 1379 390 aa, chain - ## HITS:1 COG:HP0233 KEGG:ns NR:ns ## COG: HP0233 COG0754 # Protein_GI_number: 15644861 # Func_class: E Amino acid transport and metabolism # Function: Glutathionylspermidine synthase # Organism: Helicobacter pylori 26695 # 1 390 1 390 390 507 63.0 1e-143 MEIIKATPLSNEDLEDLGLNWHTDVDETPYVSDEIVVLSEQEAQNYYDAVNELYDMYVEA GQYVIDNDLFFELGIPFNLVEAIQMSWEEEVHWHLYGRFDLAGGLDGTPIKLLEFNADTP TMVYESAIIQWALLKKNGFKESLQFNSLYESLGDNFKRMITLGDDISNFNKVYEGWKILF SSIQGSDEEERTTRLLEVIAKEAGFGTNFCYAHEAHLDENAGLSFNGENYEFWFKLIPWE SIAIDEPDLANLITAMIRNKNTIFLNPAYTLMFQSKRMLKILWDLFPNHPLLLETSYEPL VGKKQVKKHAFGREGESVSILDSKGNALVQNSGNYGNYPEIYQEYALLNQHNGSFYQANV FYAYEACALGFRKGGEILDNMSKFVSHKIK >gi|197325098|gb|DS990368.1| GENE 848 864310 - 864942 682 210 aa, chain - ## HITS:1 COG:no KEGG:WS0575 NR:ns ## KEGG: WS0575 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 3 210 2 191 217 163 55.0 5e-39 MKKFLKKISDPKIVGVFSKSGLGLVAILALVGCDSGSQNSNNAGGLEQATKNGATVTIEQ QSDGTYKILEETPSNTTRVILREADGNERILSQEEIDKIIAEESKKIDAGTSQLTNPTGA GLSLGETILASAAGAILGSWIGSKLFNNQNYQAQQRTSYKTPQAYERSQNSFNRSATSAT SSAGRSGFYSPNNTSTTQNRSSSSSSAFGG >gi|197325098|gb|DS990368.1| GENE 849 865192 - 866595 1477 467 aa, chain + ## HITS:1 COG:no KEGG:WS1780 NR:ns ## KEGG: WS1780 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 467 1 441 441 337 44.0 1e-90 MKITKLSLATCIALGSLSTASFAQPLEEAIKGIDVSGMLRYRYTDNRYKDQNFNKNGTTK GNANHQWRAEALFKTPVINNISMNLGIGYHNAQQNVNHGKGDGTSIAPNAGAFTGNGLGS GSDSWFGVREFNMVITPDSTNTTIKAGKMIMQTPISDTLDDRATGIFVTNSDLNHWTFNL GAFDSWSIDDYQTGYALTPDNKSFDKPLYTAAALSNYDTNIGNFSTQLWLFNATDMIDFA GFGELAWQDSMFHLRGQYAFSKLNSDANSPWTSVYKGNKVKEGNDLYTLEAGVKFHDLNI PLAAKIGYWGNTQDGYAVSLDNEGSFQKVGQIWFENAATGVSISMLPAEGQNMPRGFESN ELSLFYANINYDILENLNVGIDFVTGTNKISRGQGAAHYSGDIDFTEINPNITWQYSKSL RIFAHYSILTTDATRQIATAMNNTLPAEQISDSEDRNRLRVEVKYTF >gi|197325098|gb|DS990368.1| GENE 850 866802 - 868133 1712 443 aa, chain + ## HITS:1 COG:slr0118 KEGG:ns NR:ns ## COG: slr0118 COG0422 # Protein_GI_number: 16331858 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis protein ThiC # Organism: Synechocystis # 1 441 1 444 459 630 65.0 1e-180 MRTKWVEARKNDKIKTQLHYAKKGIITQEMEYVANIEHLEAETIRKEIAKGRLILPSNVN HTNLEPMGIGISVRTKINSNIGSSALASSIEEEVQKTIISIKYGADTIMDLSTGGDLDSI REAVIKNSSVPIGTVPIYQILHDVKNDINALTIDKMLEVMERQAKQGVSYFTIHCGFLLE HMPLLAKRKMGIVSRGGSLMASWMMHYHKQNPFYEAFDDILDICQKYDVSLSLGDSLRPG CLADSSDAAQLSELKVLGELTKRAWEKDVQVMIEGPGHVPMNEIERNVELQKELCFEAPF YVLGPLVTDIAAGYDHIASAIGAAIAAWKGVAMLCYVTPKEHLGLPNAKDVREGIIAYKI AAHAADIARGRINARVRDDAMSNARYNFDWNKQFELALDPERAKEYHDESLPQEVFKEAK FCSMCGPKFCSYKISQEIIQQNN >gi|197325098|gb|DS990368.1| GENE 851 868148 - 869263 1449 371 aa, chain + ## HITS:1 COG:Cj1606c KEGG:ns NR:ns ## COG: Cj1606c COG0489 # Protein_GI_number: 15792911 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Campylobacter jejuni # 3 370 2 367 368 442 59.0 1e-124 MNQEQLVSLLKEIIYPNFEKDIVTFGFVKEMLIHENAVSLRIEIPSASPEVAETLRTQIT QKLNAQGITKINLDIKQPKPQAQNQKPQGTKNLAPQIKNFVMVSSGKGGVGKSTTSVNLA IALAQQGKKVALLDADIYGPNIPRMLGLQNDKPEVDQKLKKLIPLQAYGIEMISMGVLYD EGQSLIWRGPMIIRAIEQMLSDVLWDNLDVMVIDMPPGTGDAQLTLAQSVPVTAGIAVST PQKVALDDGARALDMFAKLKIPVAGIIENMSGFICPDCGKEYDIFGKGTTEEVAKAYGTK TLAQIPIEPSVREAGDNGKPIVYFHPDSKSAKEYLKAAKELWDFMEEVNAKKLADNSAIQ PVDTGKSACSS >gi|197325098|gb|DS990368.1| GENE 852 869316 - 870176 715 286 aa, chain - ## HITS:1 COG:Cj1458c KEGG:ns NR:ns ## COG: Cj1458c COG0611 # Protein_GI_number: 15792775 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate kinase # Organism: Campylobacter jejuni # 22 285 17 272 273 159 36.0 5e-39 MRDREKVFIEELSQSRAGFGIGDDGVVLGDFVVANDAFFEGIHFKQEWGSLDRLIKKAFL VNLSDIYAMNAIPRYVLLTLCIPKDFKEAKKLARIFNLMAENFGVKIVGGDTIVGEKLHF SLTILGQKGKKTLFRKPIQKGDFLAYLSPRSPLNLSNKQAFGKNLKNLKGALRFNQVIKN TRFDSPILYPKMILALNKVAKAGMDISDGIFAELARLAKLNNVDFKFFQPKGEWFYSPEE YQMLYALSAKKLKKAQNLAGKFRHNLVVFARAKRGKYKKLKKNWHS >gi|197325098|gb|DS990368.1| GENE 853 870195 - 871022 391 275 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 [Kordia algicida OT-1] # 6 273 11 283 286 155 36 5e-36 MHKILLDDFLKATLKEDMGKGDLYARIENNIEVESYILAKEDGILSGRIYVERLCELLGI EVEFSLKDAEAFYKGAKIATFKGKMSAILGAERTILNLLQHSSGIATLTNKYVKALEGTQ CVLLDTRKTRPLLRDFEKYSTRNGGAINHRFGLDDCLMLKDTHLSRILSLSKFIQEIKEK IPFTTKIEVECENVLQAKEALESKIDILMCDNMEATTIKEIVKMRDLIAPNVLLEASGNI TLANIREYAKSGIDAISSGAIIHQATWLDMSMKID >gi|197325098|gb|DS990368.1| GENE 854 871032 - 872027 1029 331 aa, chain - ## HITS:1 COG:jhp1274 KEGG:ns NR:ns ## COG: jhp1274 COG0379 # Protein_GI_number: 15612339 # Func_class: H Coenzyme transport and metabolism # Function: Quinolinate synthase # Organism: Helicobacter pylori J99 # 1 331 7 336 336 437 65.0 1e-122 MKARIKELQKKLDVLLVAHFYQRDEIVEIADLIGDSLELARKSSQSKNQNVVFCGVGFMG QSVKILAPKKRVFMPKIACCSMARMIDDTYFDKSIEKLKEYGIETIFPVTYINSNAEVKA KVAELDGVVCTSANAAKIMDYALKHNKKIFFLPDRCLGQNLASQNGLKSAVLGLDSKEKI LDADIICYDGFCSVHQLFTAEDVDFYRQKYPDILVAVHPECTPEVVQKADFVGSTSQIIQ YVQNLDPAQRVVVGTEFNLVNRLRKPYNGIQNTFVLSSTKPECPTMNETTLQDVLNVLEA LDKGEAYNEILLKEEVAIKAKRALEKMLELS >gi|197325098|gb|DS990368.1| GENE 855 872030 - 872812 435 260 aa, chain - ## HITS:1 COG:HP1357 KEGG:ns NR:ns ## COG: HP1357 COG0688 # Protein_GI_number: 15645969 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine decarboxylase # Organism: Helicobacter pylori 26695 # 4 258 5 264 267 218 44.0 1e-56 MHYTNLISRIFEKLSHFAFCPKIQFLINKAYVKLFKIDLEEFDTLQSYPTLDALFTRSLV KMRSFDKNQNVLISPCDGVVMESGVCKNNMAMQIKGKNYGLRDFIHQDLDEHYCFVNFYL SPRDYHRFHAPINLEVKKIELIEGMLLPVNERSLLKNENLFNKNKRVVLECQDDFGNAFY YVAIGALNVGKIQINVESEIVNLKMNKIYEYKKPIKIKKGEEIGCFHMGSTIVILSKNWE YDLKPREKVFFGQQIAKYKE >gi|197325098|gb|DS990368.1| GENE 856 872815 - 873528 674 237 aa, chain - ## HITS:1 COG:Cj1035c KEGG:ns NR:ns ## COG: Cj1035c COG2935 # Protein_GI_number: 15792362 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Putative arginyl-tRNA:protein arginylyltransferase # Organism: Campylobacter jejuni # 13 233 13 235 239 189 43.0 3e-48 MEIFEILQSPKPCSYLEGIESKFRYFYIKQCSKEFYDLLLQRGWRRFGYYFFVPICQGCE ECISIRQDCENFVFSKSQQRILKNPLKLKITRPKVSLEHLELYEKYHRIMQGKKGWQYQK STLEIYYETFVQGYQDFGYEFDYYYEEKLVGVALVDILDNAISAVYCYYDHDFKKFSIGS YSILKQIAFAKEYNIKYLYPGYWIKDHHSMGYKEKFKPFEVLQNRPNLNEDSIWIKE >gi|197325098|gb|DS990368.1| GENE 857 873528 - 874775 1558 415 aa, chain - ## HITS:1 COG:VC0450 KEGG:ns NR:ns ## COG: VC0450 COG0741 # Protein_GI_number: 15640477 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Vibrio cholerae # 60 401 70 396 396 278 45.0 2e-74 MGGCLLGYRDLIYNSQNLSTQQIVKKVVNKTLDTTLEATQSNTAPTLDSAINAVLEEVLD SEQLENIIKNLQANFKKIVAQLTQKVIQNWGKDDAQTASQEVYVKYTDSYLSRAEVDFAK GIISVSTLDTKNPKEALHKAIVATLLTPDDPEKVDLYSDKEVVYSGTPYLANLVKDNEGK VVLYPWRANRYATYLIDNDLKTREIEEAGKKKIVYYVQFDMVADREIQSEHKYGEYVALY AKEYGIEQALIFAIIKTESSFNPYAVSHIPAYGLMQVVPASAGRDVYKALNNKDGIPTKE MLFTPKINIQYGSTYLDILFTRYLTGIKNNLSHEYCVIAAYNTGSGNVLSVFHSDRKKAV EVINSMTSAEVYRKLRTSLKYEEARNYLLKVTNAKKEFQTAARNTNASPILLSVK >gi|197325098|gb|DS990368.1| GENE 858 874820 - 875371 685 183 aa, chain - ## HITS:1 COG:BB0621 KEGG:ns NR:ns ## COG: BB0621 COG0693 # Protein_GI_number: 15594966 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Borrelia burgdorferi # 4 182 3 181 184 133 43.0 2e-31 MAKVLIPLGKGFEELEAISIIDVLRRVGCEVVVASLNDSLEVISQGGVKVIADASLREID ESSLDAVVFPGGWEGTQNLIASSELKEIVLKLHSNHKIIAAICAAPLALFKMGMLENCDF TCYPGIEKNIKNPNYKISKNVIQSENIITSKGPATALEFAFYLAEILVSKQKAQEIKEGM LVS >gi|197325098|gb|DS990368.1| GENE 859 875381 - 875944 792 187 aa, chain - ## HITS:1 COG:HP0177 KEGG:ns NR:ns ## COG: HP0177 COG0231 # Protein_GI_number: 15644806 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Helicobacter pylori 26695 # 1 187 1 187 187 292 77.0 3e-79 MAYSMGDLKKGLKIELEGVPYRITEYQHVKPGKGAAFVRVKMKSFLDGRVLEKTFHAGDK CEEPNLQEKSMQFLYHDGDFFQFMDNETYEQIGLSEDQVGDVAKWMIESMVVNILFHNGK AISVDVPQTVELKVVETPPNFKGDTTSASKKPATLETGAVVQVPYHVLEGDVIRVNTETG EYLDKVK >gi|197325098|gb|DS990368.1| GENE 860 875961 - 876884 1261 307 aa, chain - ## HITS:1 COG:jhp0162 KEGG:ns NR:ns ## COG: jhp0162 COG0191 # Protein_GI_number: 15611232 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Helicobacter pylori J99 # 1 307 1 307 307 493 80.0 1e-139 MLVCGNTILQKANQENYGVGAFNFVNYEMLSAIFEAANLKNSPIIVQASEGAIKYMGIDM AVGMVKILASRYPYIPVALHLDHGTSFESCVRAIRAGFTSVMIDASHHPFEENLAETKKV VEVAHIAGVSVEAELGRLMGIEDNISVDEKDACLVNPQEAEEFVRESKVDFLAPAIGTSH GAFKFKGEPKLDFERLQEVKRRTKIPLVLHGASAIPDYVRASFLNTGGDLKGSKGVPFDF LKEAIKGGINKVNTDTDLRIAFMAEVRRVANEDKTQFDLRKFFAPAKEAMVKVMAERMDI LGSSNKI >gi|197325098|gb|DS990368.1| GENE 861 876893 - 877708 1146 271 aa, chain - ## HITS:1 COG:Cj0596 KEGG:ns NR:ns ## COG: Cj0596 COG0760 # Protein_GI_number: 15791956 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Campylobacter jejuni # 8 268 5 271 273 157 38.0 3e-38 MKKILLSSVVAFSLLQGVSFAETFAKVNGDEITEKDIAALMRAMPGVSFAQLPQEAKDQV VNQAVERKLLIAQAKKEGVEKSKEFKEALESVKEDLALEVWMRQEMGKVKVSSSEIEKFY NQNKTKFVQPETAKVKHILVSSEADAKNIIADLKKAGKNVASKFEEFAKAKSKDGSAQNG GELGWIAKGQVVPEFADAAFKLNKGQYTQTPVKTQFGYHVIYVDDKRPTTTLALKDVSGQ IEQNLKLTKFQENVRKEGQDLRSKAKVEIIK >gi|197325098|gb|DS990368.1| GENE 862 877895 - 879370 1692 491 aa, chain - ## HITS:1 COG:Cj1357c KEGG:ns NR:ns ## COG: Cj1357c COG3303 # Protein_GI_number: 15792680 # Func_class: P Inorganic ion transport and metabolism # Function: Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit # Organism: Campylobacter jejuni # 1 487 125 610 610 764 74.0 0 MDTARNNKDFLNAHGFAAFGGQPTACMNCHSGWSPWLLKNVGIGDTPEEKWISFNSTKYW TMIKNVPEVEGVADHSGPHGGTRMGVTCADCHNPNDMQLRLTRQAAINALVNFRGYEPDP VTGVKASREEMRTLVCSQCHVEYYFKPTGTKVKVMGESIANDPSKKWWNGTQKTYDEIDV WRDGNKPTEIEVDGLELVFPWSEWKKNEPFRIEMFDAHYEKVRDVFDKDWAHKFTKAPML KIQHPESELYSGGVHAANGVSCADCHMPYIRKGSKKMTQHNITSPLQDINAACKSCHTQS EEYLRQQVADIQKSVAYDLRSAEYAMVSLIEDIKVLREKLGAMPSYQTNGKPDDTKISAA LKEPLELHRKGQMRGDFVGAENSTGFHNPREASRMLLQAVEMARMGQTKLVEIANANGIK DFKTSNLGFEDMQKYNPGEIRYKVDLNGHKAGERYYKHEEINGPAPKELLELDKNNKPYN YKVIDSKTSSY >gi|197325098|gb|DS990368.1| GENE 863 879688 - 880005 560 105 aa, chain - ## HITS:1 COG:Cj1357c KEGG:ns NR:ns ## COG: Cj1357c COG3303 # Protein_GI_number: 15792680 # Func_class: P Inorganic ion transport and metabolism # Function: Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit # Organism: Campylobacter jejuni # 4 101 2 102 610 117 54.0 4e-27 MQKKSPVLPILVVIAVIIIAGLLWLNSDITKKQSEGTGGISSKGFVEMSDDNPTFDHWGK NFPDYLDMYLTVETEKPISTEFGGNLAYSKLIRYPQLTILWELAS >gi|197325098|gb|DS990368.1| GENE 864 880025 - 880498 534 157 aa, chain - ## HITS:1 COG:Cj1358c KEGG:ns NR:ns ## COG: Cj1358c COG3005 # Protein_GI_number: 15792681 # Func_class: C Energy production and conversion # Function: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit # Organism: Campylobacter jejuni # 8 156 22 170 171 220 66.0 1e-57 MAGLLGFLCVVIVVVGLYTFYNAKGLSYFSNDSEACNNCHIMNDVYNDWSRGAHSQKIAG KPRATCNDCHLPHSFVEKWVAKAESGIGHAYAFTFKLDVLPTNLTATQKSKDMIQENCVR CHSEMVSNVVNPTTNPHGNGSLSCVSCHASAGHKRGF >gi|197325098|gb|DS990368.1| GENE 865 880660 - 881289 874 209 aa, chain - ## HITS:1 COG:PM0935 KEGG:ns NR:ns ## COG: PM0935 COG2860 # Protein_GI_number: 15602800 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Pasteurella multocida # 1 205 1 204 226 203 55.0 2e-52 MLLTILYIIGITAEGMTGALAAGRHNMDWFGVIFIACVTAIGGGSIRDILFGHYPLTWVA HPQYLAIVCVAALLTTKIPYFVERFEKAFLILDALGLAVFSVIGARIGMDFHPSGAMAVA GAVITGVFGGILRDIFCARIPLVFQKELYASIALFVGSLYVFLEWISQSYFVLDENFIVI FALIVGFVARIIAIRYHLGLPTFKYTPKN >gi|197325098|gb|DS990368.1| GENE 866 881291 - 881413 61 40 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253827817|ref|ZP_04870702.1| ## NR: gi|253827817|ref|ZP_04870702.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] # 1 40 360 399 399 82 100.0 9e-15 MRHGISSRELEEGARNLEYLYNAKTISGVDLGYLFREFKA >gi|197325098|gb|DS990368.1| GENE 867 881560 - 882549 1215 329 aa, chain - ## HITS:1 COG:jhp0650_1 KEGG:ns NR:ns ## COG: jhp0650_1 COG4940 # Protein_GI_number: 15611717 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Competence protein ComGF # Organism: Helicobacter pylori J99 # 1 177 10 185 194 193 53.0 4e-49 MKKPTLSIALLQKIFVAANIRRWNDQATPVEFYELDKQAHKIVIAYLLAHFEEIENGKKI DWERLILQFCYEFFERIILTDIKPPVFHKLTQTHNKELVDFVCKELEEDLSGFAFFESMR KYLYGEVENLEKEILKASHYYASKWEFDIIYHFNPKMYDVQNIKNIIDKQVEEHYHLAGI RQIVLYEDMRELVAMFGQLRFQKRWSQTPRVPPTSVLGHTLIVALCAYLLGYDLGFCRQM QINHFLCGLFHDLPEILTRDIISPIKRSVEGLDEFIKQIEEEEVREKILSKVPEAIKKDI LYFTQNEFANRYKTTKGVVYLPKGEELAS >gi|197325098|gb|DS990368.1| GENE 868 883194 - 884216 1163 340 aa, chain + ## HITS:1 COG:aq_1019 KEGG:ns NR:ns ## COG: aq_1019 COG0309 # Protein_GI_number: 15606316 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Aquifex aeolicus # 6 340 4 332 332 334 48.0 2e-91 MKQSIITLSHGSGGVESQKLISELFYPFLEGCVIGNGEDAGIGELDSISQGKFAISTDGY TISPLFFPGGDIGKLSICGSCNDVAMMGAKPKYLSASFMIEEGFLIDDLKKILDSFGKTL KASGAKLLSGDTKVLPKGTLDKIFITTTAFGEFLYPHLQISAFNIPQDCCILVSGEIGNH GAVVYSKREEISLQSNLESDCQLLYPSLEELFKNNLSIYALRDATRGGIASVLNEWANAS HIGIEIEEETLPIKDEVRGICELLGFEAWNLANEGMCVLAIAKEDSKKALEILKRTPAGK NATIIGYTTSTNLNKVVLKTAYGAKRFLDYPSGELLPRIC >gi|197325098|gb|DS990368.1| GENE 869 884294 - 885217 1039 307 aa, chain - ## HITS:1 COG:XF0668 KEGG:ns NR:ns ## COG: XF0668 COG2931 # Protein_GI_number: 15837270 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: RTX toxins and related Ca2+-binding proteins # Organism: Xylella fastidiosa 9a5c # 3 155 178 340 1208 78 35.0 2e-14 MIDPLVIDYAGNGTELSDTKMSFDLDSDGTKDQISTLKEGSGFLALDKNNDGKINDGNEL FGTKSGNGFKDLSAYDSNQDGKIDKNDPIYDKLRIWTPNQKGEGELVGLGEKGIGVIYLD AKESQEMMRGEEGDLLGIKQQTSNFMREDGSLGAIHHIDFVAENPTNNTQNTSNINSQQG LQVAASRAYLQNLNINFSFSQGSGNILNGNQTSLSAFSFSATQYSFSLSSLESANNGVSQ ELSTLWKGLQEAFLGFEGKEESSHIFGDLLKQFDETFADLNRFVFDGMEENLFKESLVGN LHKLLAA >gi|197325098|gb|DS990368.1| GENE 870 885404 - 885913 539 169 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253827820|ref|ZP_04870705.1| ## NR: gi|253827820|ref|ZP_04870705.1| hypothetical protein HCAN_1174 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1174 [Helicobacter canadensis MIT 98-5491] # 1 169 1 169 495 273 99.0 3e-72 MQASMNFSSLQASYTTTHWSALGEEIANNQANSVPQINNEGENSQKASNILSSTELLNSK LGDFHKQVINQALGKIAEIQNEMIKVWEEVFGVSSGKSTNSSDTSISLESLLNGNFSRPN YNLGSGISITQGFSQSLELSIQGTIVGKDGVTKKLDLSISVSQSFVQNF >gi|197325098|gb|DS990368.1| GENE 871 886188 - 887543 1732 451 aa, chain + ## HITS:1 COG:HP0380 KEGG:ns NR:ns ## COG: HP0380 COG0334 # Protein_GI_number: 15645008 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Helicobacter pylori 26695 # 3 450 2 448 448 645 70.0 0 MSYTQDVIAKVQRLYPDQVEFHQAVKEVLESIEPALQKDKRYEKFKVLERIVIPERQINF RVTWEDDRGEIQVNRGYRIEFSSLLGPYKGGLRFHPSVTEGIIKFLGFEQIFKNSLTGLA MGGGKGGSDFDPKGKSDREVMRFCQAFMNELYRHIGAHTDVPAGDIGVGGREIGYLFGQY KKLTNRYDGVLTGKSLLWGGSLVRTEATGYGSVYFAQEMLKHSDFGSLEGKTCLVSGSGN VAIYTIEKLQQLGAKPVTISDSKGMIYDEAGIDLALLKEIKEVRRESLESYAKERPNAKY TSAKDYPSDHNPLWSIPAFAAFPSATQNEINAKDADNLLKNGCKCVSEGANMPSTIEAVH KFLNAKICYGPGKAANAGGVATSGLEMSQNASMTSWSFEEVDKKLHNIMQNIYANASETA KEFGDPTNLVLGANIAGFRKVANAMIEQGLC >gi|197325098|gb|DS990368.1| GENE 872 887657 - 888379 514 240 aa, chain + ## HITS:1 COG:Cj1669c KEGG:ns NR:ns ## COG: Cj1669c COG1793 # Protein_GI_number: 15792973 # Func_class: L Replication, recombination and repair # Function: ATP-dependent DNA ligase # Organism: Campylobacter jejuni # 1 239 39 281 282 244 49.0 8e-65 MSEKLDGIRGIWNGKTLSTRNNNPLNPPKFWLKNFPSFNLDGELWLDYESFEQISSIIHT STPNPKEWQKIIYYIFDAPNICKNCTLLERLTKLQEYLDKNPAPYIKIIPQIKIQDKNHL QSYFQSILDKKGEGIIIRQNDSSYSDSNHSYKYKPYMDSECKVIGYTQGKGKFKGMLGAI ICQANLKGELKTFKIGSGFTQKERENPPPINSIITYKYNGFTKNNLPRFPIFLRIRNTDF >gi|197325098|gb|DS990368.1| GENE 873 888427 - 889065 907 212 aa, chain + ## HITS:1 COG:Cj1111c KEGG:ns NR:ns ## COG: Cj1111c COG2095 # Protein_GI_number: 15792436 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Multiple antibiotic transporter # Organism: Campylobacter jejuni # 11 211 3 206 208 197 57.0 1e-50 MFEELQPWILAQLYSILLAAVTILAVLNPFGNLPQFISMTEELETSLRQSLFRNILYTSF IIVILFLLVGPFIMRYLFNVDLNDLRIAGGLLLILVSLKNLLFAPHKNTHHYETTDKNEL LSQSIVPMAFPMLVGPGTLSTGIVISEENGTFIALSAVVTAFAFMLILFHFSATIERVLG KLVLHVLSRIALVFIMAMGAKMMITGLKATFA >gi|197325098|gb|DS990368.1| GENE 874 889516 - 889771 200 85 aa, chain + ## HITS:1 COG:Cj1113 KEGG:ns NR:ns ## COG: Cj1113 COG2833 # Protein_GI_number: 15792438 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 10 68 159 217 265 67 50.0 5e-12 MKNCNILLDRIALVPRGMEAVGLDVNPFLCAKVQASNHPIKKDFLKVLEIIFQEEILHVS KGNIWFHYICDKQSIPKQKRAEVYL Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:03:46 2011 Seq name: gi|197325097|gb|DS990369.1| Helicobacter canadensis MIT 98-5491 supercont2.2 genomic scaffold, whole genome shotgun sequence Length of sequence - 336553 bp Number of predicted genes - 357, with homology - 353 Number of transcription units - 128, operones - 75 average op.length - 4.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 93 - 404 224 ## COG3004 Na+/H+ antiporter + Term 504 - 545 4.8 2 2 Tu 1 . - CDS 401 - 1417 1065 ## COG2089 Sialic acid synthase - Prom 1441 - 1500 7.2 + Prom 1221 - 1280 5.1 3 3 Tu 1 . + CDS 1482 - 1865 425 ## gi|224418518|ref|ZP_03656524.1| hypothetical protein HcanM9_04485 + Prom 4050 - 4109 3.0 4 4 Op 1 . + CDS 4250 - 6205 1881 ## Kkor_0950 hypothetical protein 5 4 Op 2 . + CDS 6255 - 7013 861 ## COG0708 Exonuclease III 6 4 Op 3 . + CDS 7003 - 7461 471 ## COG0319 Predicted metal-dependent hydrolase 7 4 Op 4 . + CDS 7455 - 7991 456 ## COG1988 Predicted membrane-bound metal-dependent hydrolases 8 4 Op 5 15/0.000 + CDS 8023 - 8805 707 ## COG0575 CDP-diglyceride synthetase 9 4 Op 6 . + CDS 8810 - 9934 1115 ## COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase 10 4 Op 7 . + CDS 10012 - 10980 1240 ## COG0753 Catalase + Term 11007 - 11044 1.1 - Term 10901 - 10941 -0.8 11 5 Op 1 2/0.024 - CDS 11026 - 11982 1203 ## COG0598 Mg2+ and Co2+ transporters 12 5 Op 2 . - CDS 12005 - 13216 1747 ## COG0126 3-phosphoglycerate kinase 13 5 Op 3 . - CDS 13287 - 14297 850 ## COG0642 Signal transduction histidine kinase 14 5 Op 4 . - CDS 14294 - 14614 469 ## WS1591 hypothetical protein 15 5 Op 5 . - CDS 14626 - 15684 1464 ## COG1706 Flagellar basal-body P-ring protein - Prom 15840 - 15899 79.9 + TRNA 15821 - 15898 81.2 # Pro GGG 0 0 + Prom 15823 - 15882 80.3 16 6 Op 1 . + CDS 16074 - 16832 704 ## COG0171 NAD synthase 17 6 Op 2 . + CDS 16844 - 17974 1271 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 18 6 Op 3 . + CDS 17976 - 18878 842 ## COG1663 Tetraacyldisaccharide-1-P 4'-kinase + Term 18953 - 19001 7.0 - Term 18849 - 18891 5.1 19 7 Op 1 11/0.000 - CDS 18909 - 19628 596 ## COG0810 Periplasmic protein TonB, links inner and outer membranes 20 7 Op 2 30/0.000 - CDS 19591 - 19977 600 ## COG0848 Biopolymer transport protein 21 7 Op 3 . - CDS 19961 - 20398 683 ## COG0811 Biopolymer transport proteins - Prom 20430 - 20489 8.4 22 8 Tu 1 . - CDS 20910 - 21044 131 ## CJE1111 hypothetical protein - Prom 21107 - 21166 3.4 + Prom 21053 - 21112 3.7 23 9 Tu 1 . + CDS 21238 - 21396 70 ## gi|313142065|ref|ZP_07804258.1| predicted protein 24 10 Op 1 . - CDS 22083 - 22313 185 ## Cla_1151 hypothetical protein 25 10 Op 2 . - CDS 22280 - 22858 332 ## Cla_1151 hypothetical protein - Prom 22989 - 23048 7.3 26 11 Op 1 . - CDS 23121 - 24839 2617 ## COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase 27 11 Op 2 . - CDS 24851 - 25399 552 ## WS1771 hypothetical protein 28 11 Op 3 . - CDS 25396 - 25914 483 ## WS1772 hypothetical protein 29 11 Op 4 . - CDS 25914 - 26960 1214 ## WS1773 hypothetical protein - Prom 27000 - 27059 9.3 30 12 Op 1 . - CDS 27101 - 27841 841 ## COG2836 Uncharacterized conserved protein 31 12 Op 2 . - CDS 27867 - 29270 1837 ## COG0215 Cysteinyl-tRNA synthetase - Prom 29309 - 29368 10.7 - Term 29411 - 29449 2.1 32 13 Op 1 . - CDS 29463 - 30980 1437 ## COG1495 Disulfide bond formation protein DsbB 33 13 Op 2 . - CDS 30993 - 31160 146 ## - Prom 31249 - 31308 10.0 + Prom 31228 - 31287 10.5 34 14 Op 1 . + CDS 31466 - 32287 861 ## WS0266 hypothetical protein 35 14 Op 2 . + CDS 32300 - 33679 1593 ## COG0277 FAD/FMN-containing dehydrogenases 36 14 Op 3 25/0.000 + CDS 33734 - 34204 626 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 37 14 Op 4 3/0.000 + CDS 34201 - 35004 809 ## COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase 38 14 Op 5 3/0.000 + CDS 35001 - 36239 1447 ## COG1219 ATP-dependent protease Clp, ATPase subunit 39 14 Op 6 22/0.000 + CDS 36263 - 37297 1585 ## COG1077 Actin-like ATPase involved in cell morphogenesis 40 14 Op 7 . + CDS 37301 - 38116 691 ## COG1792 Cell shape-determining protein + Term 38164 - 38231 4.7 + Prom 38182 - 38241 5.6 41 15 Op 1 11/0.000 + CDS 38274 - 39425 1619 ## COG1740 Ni,Fe-hydrogenase I small subunit 42 15 Op 2 8/0.000 + CDS 39443 - 41179 2011 ## COG0374 Ni,Fe-hydrogenase I large subunit 43 15 Op 3 7/0.000 + CDS 41191 - 41856 734 ## COG1969 Ni,Fe-hydrogenase I cytochrome b subunit 44 15 Op 4 . + CDS 41856 - 42392 654 ## COG0680 Ni,Fe-hydrogenase maturation factor 45 15 Op 5 . + CDS 42394 - 44064 1163 ## WS1683 hypothetical protein + Prom 44115 - 44174 9.9 46 16 Tu 1 . + CDS 44234 - 45922 2032 ## gi|253826889|ref|ZP_04869774.1| immunoglobulin A1 protease precursor + Prom 47166 - 47225 80.4 47 17 Op 1 . + CDS 47304 - 48017 1136 ## COG0217 Uncharacterized conserved protein + Prom 48027 - 48086 7.8 48 17 Op 2 . + CDS 48112 - 48432 501 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 48437 - 48467 2.7 + Prom 48453 - 48512 6.2 49 18 Op 1 2/0.024 + CDS 48540 - 49973 1535 ## COG0739 Membrane proteins related to metalloendopeptidases 50 18 Op 2 2/0.024 + CDS 49982 - 50575 597 ## COG0850 Septum formation inhibitor 51 18 Op 3 3/0.000 + CDS 50572 - 51459 1106 ## COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase 52 18 Op 4 . + CDS 51461 - 51916 524 ## COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone 53 18 Op 5 . + CDS 51918 - 52781 969 ## COG0053 Predicted Co/Zn/Cd cation transporters 54 18 Op 6 . + CDS 52781 - 54511 1930 ## COG0464 ATPases of the AAA+ class 55 18 Op 7 . + CDS 54570 - 55910 1349 ## COG0733 Na+-dependent transporters of the SNF family + Term 55919 - 55966 5.0 56 19 Op 1 . - CDS 55912 - 56238 459 ## WS0805 hypothetical protein 57 19 Op 2 . - CDS 56283 - 56498 324 ## gi|224418570|ref|ZP_03656576.1| hypothetical protein HcanM9_04757 58 19 Op 3 . - CDS 56510 - 57709 1316 ## COG0520 Selenocysteine lyase 59 19 Op 4 . - CDS 57684 - 57902 355 ## gi|224418572|ref|ZP_03656578.1| hypothetical protein HcanM9_04767 60 19 Op 5 . - CDS 57904 - 58962 427 ## PROTEIN SUPPORTED gi|167854911|ref|ZP_02477687.1| ribosomal protein L11 methyltransferase - Prom 59171 - 59230 7.6 - Term 59226 - 59259 -0.5 61 20 Op 1 . - CDS 59434 - 60933 1848 ## COG0480 Translation elongation factors (GTPases) 62 20 Op 2 51/0.000 - CDS 60890 - 61516 576 ## COG0480 Translation elongation factors (GTPases) - Term 61552 - 61588 3.1 63 20 Op 3 56/0.000 - CDS 61596 - 62063 786 ## PROTEIN SUPPORTED gi|224418576|ref|ZP_03656582.1| 30S ribosomal protein S7 64 20 Op 4 5/0.000 - CDS 62076 - 62465 650 ## PROTEIN SUPPORTED gi|224418577|ref|ZP_03656583.1| 30S ribosomal protein S12 - Prom 62488 - 62547 5.8 65 20 Op 5 2/0.024 - CDS 62565 - 71210 10533 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit - Term 71247 - 71281 3.6 66 21 Op 1 47/0.000 - CDS 71289 - 71663 597 ## PROTEIN SUPPORTED gi|224418579|ref|ZP_03656585.1| 50S ribosomal protein L7/L12 67 21 Op 2 43/0.000 - CDS 71688 - 72170 786 ## PROTEIN SUPPORTED gi|224418580|ref|ZP_03656586.1| 50S ribosomal protein L10 - Prom 72198 - 72257 4.1 68 21 Op 3 55/0.000 - CDS 72261 - 72965 1157 ## PROTEIN SUPPORTED gi|224418581|ref|ZP_03656587.1| 50S ribosomal protein L1 69 21 Op 4 45/0.000 - CDS 72989 - 73414 710 ## PROTEIN SUPPORTED gi|224418582|ref|ZP_03656588.1| 50S ribosomal protein L11 70 21 Op 5 46/0.000 - CDS 73437 - 73967 738 ## COG0250 Transcription antiterminator 71 21 Op 6 14/0.000 - CDS 73984 - 74163 70 ## COG0690 Preprotein translocase subunit SecE - TRNA 74193 - 74268 73.6 # Trp CCA 0 0 72 21 Op 7 . - CDS 74299 - 74469 295 ## PROTEIN SUPPORTED gi|224418585|ref|ZP_03656591.1| 50S ribosomal protein L33 73 21 Op 8 . - CDS 74480 - 75679 1504 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 - Prom 75710 - 75769 8.3 - TRNA 75794 - 75868 88.2 # Thr GGT 0 0 - TRNA 75936 - 76012 94.6 # Gly TCC 0 0 - TRNA 76026 - 76110 62.2 # Tyr GTA 0 0 - TRNA 76151 - 76226 90.5 # Thr TGT 0 0 + Prom 76268 - 76327 8.2 74 22 Op 1 . + CDS 76411 - 78366 2667 ## COG1629 Outer membrane receptor proteins, mostly Fe transport 75 22 Op 2 . + CDS 78366 - 78941 493 ## WS1231 hypothetical protein 76 22 Op 3 4/0.000 + CDS 78884 - 79609 564 ## COG0212 5-formyltetrahydrofolate cyclo-ligase 77 22 Op 4 . + CDS 79524 - 81095 2431 ## COG1418 Predicted HD superfamily hydrolase 78 23 Op 1 . - CDS 81114 - 82199 903 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 79 23 Op 2 . - CDS 82203 - 83000 478 ## C8J_1082 hypothetical protein 80 23 Op 3 11/0.000 - CDS 83049 - 83288 296 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 81 23 Op 4 7/0.000 - CDS 83297 - 84280 456 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 82 23 Op 5 . - CDS 84294 - 84650 94 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 83 23 Op 6 . - CDS 84666 - 85484 339 ## COG0223 Methionyl-tRNA formyltransferase 84 23 Op 7 . - CDS 85481 - 85660 68 ## HH0095 hypothetical protein 85 23 Op 8 . - CDS 85650 - 86051 314 ## C8J_1079 hypothetical protein 86 23 Op 9 16/0.000 - CDS 86041 - 87069 699 ## COG1088 dTDP-D-glucose 4,6-dehydratase 87 23 Op 10 . - CDS 87066 - 87956 998 ## COG1209 dTDP-glucose pyrophosphorylase - Prom 88024 - 88083 5.5 + Prom 87980 - 88039 7.3 88 24 Tu 1 . + CDS 88066 - 89361 845 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 89 25 Op 1 26/0.000 - CDS 89394 - 90488 855 ## COG0438 Glycosyltransferase 90 25 Op 2 . - CDS 90523 - 92103 1213 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 91 25 Op 3 . - CDS 92109 - 92819 516 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 92 25 Op 4 . - CDS 92819 - 93058 455 ## gi|224418605|ref|ZP_03656611.1| hypothetical protein HcanM9_04947 93 25 Op 5 . - CDS 93102 - 94202 1077 ## C8J_1094 hypothetical protein 94 25 Op 6 . - CDS 94210 - 95754 983 ## COG1696 Predicted membrane protein involved in D-alanine export 95 25 Op 7 3/0.000 - CDS 95773 - 96822 968 ## COG2404 Predicted phosphohydrolase (DHH superfamily) 96 25 Op 8 . - CDS 96832 - 99096 2405 ## COG1298 Flagellar biosynthesis pathway, component FlhA - Prom 99121 - 99180 7.0 + Prom 99107 - 99166 7.7 97 26 Tu 1 . + CDS 99246 - 99521 450 ## PROTEIN SUPPORTED gi|224418610|ref|ZP_03656616.1| 30S ribosomal protein S15 98 27 Tu 1 . - CDS 99518 - 101131 1597 ## COG1200 RecG-like helicase - Prom 101277 - 101336 5.2 - Term 101185 - 101221 -0.8 99 28 Op 1 3/0.000 - CDS 101356 - 102597 1540 ## COG0612 Predicted Zn-dependent peptidases 100 28 Op 2 2/0.024 - CDS 102654 - 103745 1167 ## COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes 101 28 Op 3 . - CDS 103747 - 105987 2558 ## COG4775 Outer membrane protein/protective antigen OMA87 - Prom 106032 - 106091 8.2 + Prom 106027 - 106086 12.2 102 29 Tu 1 . + CDS 106115 - 106942 820 ## COG0287 Prephenate dehydrogenase + Term 106952 - 106983 0.1 103 30 Tu 1 . - CDS 106944 - 108116 1278 ## COG0475 Kef-type K+ transport systems, membrane components - Prom 108140 - 108199 9.6 + Prom 108174 - 108233 7.8 104 31 Tu 1 1/0.098 + CDS 108254 - 109147 809 ## COG0520 Selenocysteine lyase + Prom 109149 - 109208 80.3 105 32 Op 1 . + CDS 109373 - 109717 393 ## COG0520 Selenocysteine lyase 106 32 Op 2 32/0.000 + CDS 109783 - 111474 2449 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 107 32 Op 3 1/0.098 + CDS 111478 - 111948 589 ## COG0440 Acetolactate synthase, small (regulatory) subunit 108 32 Op 4 . + CDS 111957 - 112979 1104 ## COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 109 32 Op 5 . + CDS 112981 - 113223 150 ## gi|224418622|ref|ZP_03656628.1| hypothetical protein HcanM9_05032 - Term 113073 - 113121 -0.8 110 33 Tu 1 . - CDS 113248 - 114648 1520 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases - Prom 114808 - 114867 6.6 - Term 114675 - 114716 -0.1 111 34 Tu 1 . - CDS 114919 - 117189 2904 ## COG0620 Methionine synthase II (cobalamin-independent) - Prom 117214 - 117273 7.1 112 35 Op 1 . - CDS 117335 - 117907 656 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 113 35 Op 2 1/0.098 - CDS 117923 - 118504 634 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) 114 35 Op 3 . - CDS 118501 - 118980 373 ## COG0789 Predicted transcriptional regulators 115 35 Op 4 . - CDS 119047 - 120171 309 ## NMCC_0073 hypothetical protein 116 35 Op 5 . - CDS 120251 - 121039 559 ## COG1232 Protoporphyrinogen oxidase - Prom 121267 - 121326 80.3 - Term 121126 - 121194 30.4 117 36 Tu 1 . - CDS 121328 - 121768 421 ## COG1232 Protoporphyrinogen oxidase - Prom 121844 - 121903 7.6 118 37 Op 1 1/0.098 - CDS 122183 - 123085 695 ## COG0451 Nucleoside-diphosphate-sugar epimerases 119 37 Op 2 1/0.098 - CDS 123087 - 123650 487 ## COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 120 37 Op 3 5/0.000 - CDS 123702 - 124604 644 ## COG0451 Nucleoside-diphosphate-sugar epimerases 121 37 Op 4 4/0.000 - CDS 124585 - 125673 998 ## COG0451 Nucleoside-diphosphate-sugar epimerases 122 37 Op 5 2/0.024 - CDS 125682 - 127013 932 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 123 37 Op 6 . - CDS 127030 - 127830 791 ## COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) - Prom 127940 - 127999 80.4 124 38 Tu 1 . - CDS 128611 - 129726 369 ## gi|253826816|ref|ZP_04869701.1| capsule biosynthesis protein SiaB 125 39 Op 1 2/0.024 - CDS 130133 - 130597 558 ## COG1083 CMP-N-acetylneuraminic acid synthetase 126 39 Op 2 1/0.098 - CDS 130609 - 131742 886 ## COG0381 UDP-N-acetylglucosamine 2-epimerase 127 39 Op 3 . - CDS 131735 - 132781 761 ## COG2089 Sialic acid synthase 128 39 Op 4 3/0.000 - CDS 132795 - 134135 1013 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 129 39 Op 5 . - CDS 134128 - 134763 446 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 130 39 Op 6 . - CDS 134844 - 135140 454 ## HH0093 hypothetical protein 131 39 Op 7 . - CDS 135167 - 136183 757 ## CJE1501 hypothetical protein 132 39 Op 8 . - CDS 136230 - 137180 535 ## C8J_1335 hypothetical protein 133 39 Op 9 . - CDS 137234 - 139465 1295 ## NMC0051 alpha-2,9-polysialyltransferase (EC:2.4.99.-) - Prom 139485 - 139544 5.5 134 40 Tu 1 . - CDS 139576 - 139839 239 ## gi|313142173|ref|ZP_07804366.1| predicted protein - Prom 139964 - 140023 5.1 135 41 Tu 1 . - CDS 140166 - 140783 323 ## gi|224418649|ref|ZP_03656655.1| hypothetical protein HcanM9_05167 - Prom 140814 - 140873 6.7 136 42 Tu 1 . + CDS 140916 - 142907 1444 ## COG3563 Capsule polysaccharide export protein - Term 142832 - 142873 -1.0 137 43 Tu 1 . - CDS 142893 - 143975 1025 ## COG2829 Outer membrane phospholipase A - Prom 144014 - 144073 10.0 + Prom 144032 - 144091 11.6 138 44 Op 1 26/0.000 + CDS 144111 - 144875 687 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component 139 44 Op 2 2/0.024 + CDS 144872 - 145531 857 ## COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component 140 44 Op 3 4/0.000 + CDS 145532 - 146659 1117 ## COG3524 Capsule polysaccharide export protein 141 44 Op 4 1/0.098 + CDS 146659 - 147594 852 ## COG1596 Periplasmic protein involved in polysaccharide export + Prom 147596 - 147655 59.7 142 45 Op 1 . + CDS 147751 - 148437 918 ## COG1596 Periplasmic protein involved in polysaccharide export 143 45 Op 2 . + CDS 148445 - 149620 1102 ## COG3562 Capsule polysaccharide export protein 144 46 Op 1 . - CDS 149621 - 150628 855 ## COG1087 UDP-glucose 4-epimerase 145 46 Op 2 . - CDS 150638 - 150991 266 ## Cla_0323 hypothetical protein 146 46 Op 3 2/0.024 - CDS 150998 - 151291 229 ## COG2124 Cytochrome P450 - Term 151307 - 151369 26.2 147 47 Op 1 . - CDS 151371 - 152411 976 ## COG2124 Cytochrome P450 148 47 Op 2 . - CDS 152414 - 153541 703 ## Cla_0321 hypothetical protein - TRNA 153648 - 153724 83.5 # His GTG 0 0 - TRNA 153752 - 153829 92.9 # Pro TGG 0 0 149 48 Op 1 . - CDS 153908 - 154084 92 ## gi|224418663|ref|ZP_03656669.1| hypothetical protein HcanM9_05237 150 48 Op 2 . - CDS 154094 - 154285 230 ## gi|224418664|ref|ZP_03656670.1| hypothetical protein HcanM9_05242 151 48 Op 3 . - CDS 154305 - 154670 459 ## CV_3864 hypothetical protein - Prom 154696 - 154755 5.3 + Prom 154479 - 154538 7.9 152 49 Tu 1 . + CDS 154773 - 155033 279 ## CFF8240_1425 XRE family transcriptional regulator + Term 155089 - 155129 -0.9 - Term 155044 - 155086 7.4 153 50 Tu 1 . - CDS 155088 - 156974 2505 ## COG0326 Molecular chaperone, HSP90 family - Prom 157077 - 157136 8.8 154 51 Tu 1 . + CDS 157329 - 160154 3296 ## COG0178 Excinuclease ATPase subunit + Term 160342 - 160405 2.7 155 52 Op 1 . - CDS 160189 - 160296 115 ## gi|224418669|ref|ZP_03656675.1| hypothetical protein HcanM9_05267 156 52 Op 2 . - CDS 160306 - 162516 1904 ## COG1193 Mismatch repair ATPase (MutS family) 157 52 Op 3 . - CDS 162513 - 162875 235 ## gi|224418671|ref|ZP_03656677.1| hypothetical protein HcanM9_05277 158 52 Op 4 2/0.024 - CDS 162878 - 164212 1190 ## COG0773 UDP-N-acetylmuramate-alanine ligase 159 52 Op 5 . - CDS 164203 - 164430 121 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 164596 - 164655 80.3 160 53 Op 1 . - CDS 164657 - 165541 954 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 161 53 Op 2 . - CDS 165545 - 167062 1870 ## COG0513 Superfamily II DNA and RNA helicases 162 53 Op 3 . - CDS 167122 - 167628 427 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase - Prom 167666 - 167725 3.3 - Term 167738 - 167780 2.0 163 54 Op 1 . - CDS 167807 - 169042 996 ## WS0604 hypothetical protein 164 54 Op 2 23/0.000 - CDS 169096 - 169755 748 ## COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain 165 54 Op 3 15/0.000 - CDS 169769 - 170005 414 ## COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component 166 54 Op 4 1/0.098 - CDS 170015 - 170731 773 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 167 54 Op 5 . - CDS 170743 - 172038 1644 ## COG0793 Periplasmic protease - Term 172046 - 172090 -0.6 168 54 Op 6 . - CDS 172098 - 174017 2487 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division 169 54 Op 7 . - CDS 174061 - 175146 477 ## gi|313142205|ref|ZP_07804398.1| predicted protein 170 54 Op 8 . - CDS 175208 - 175414 171 ## gi|313142206|ref|ZP_07804399.1| predicted protein - Prom 175508 - 175567 8.2 + Prom 175516 - 175575 5.7 171 55 Op 1 . + CDS 175595 - 176347 835 ## COG0730 Predicted permeases 172 55 Op 2 . + CDS 176334 - 176855 415 ## COG3663 G:T/U mismatch-specific DNA glycosylase + Prom 176862 - 176921 6.9 173 56 Op 1 . + CDS 176943 - 177350 205 ## gi|224418687|ref|ZP_03656693.1| hypothetical protein HcanM9_05361 174 56 Op 2 . + CDS 177352 - 178014 560 ## COG1385 Uncharacterized protein conserved in bacteria 175 57 Op 1 . - CDS 178505 - 180178 1668 ## gi|253826776|ref|ZP_04869661.1| putative sugar transferase 176 57 Op 2 . - CDS 180189 - 180359 198 ## gi|313142213|ref|ZP_07804406.1| predicted protein 177 57 Op 3 . - CDS 180414 - 181154 415 ## COG0223 Methionyl-tRNA formyltransferase 178 57 Op 4 . - CDS 181138 - 182451 729 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins - Prom 182497 - 182556 1.9 179 58 Op 1 . + CDS 182638 - 182769 63 ## 180 58 Op 2 . + CDS 182859 - 183314 355 ## WS0532 hypothetical protein 181 58 Op 3 . + CDS 183304 - 183714 82 ## gi|224418694|ref|ZP_03656700.1| hypothetical protein HcanM9_05396 - Term 183660 - 183691 -0.6 182 59 Op 1 1/0.098 - CDS 183740 - 185530 2091 ## COG0840 Methyl-accepting chemotaxis protein 183 59 Op 2 . - CDS 185514 - 186452 1184 ## COG1858 Cytochrome c peroxidase - Prom 186479 - 186538 7.2 184 60 Op 1 16/0.000 - CDS 186541 - 187545 1172 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 185 60 Op 2 14/0.000 - CDS 187561 - 188535 768 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 186 60 Op 3 . - CDS 188578 - 188730 267 ## PROTEIN SUPPORTED gi|224418699|ref|ZP_03656705.1| 50S ribosomal protein L32 187 60 Op 4 . - CDS 188754 - 189125 170 ## HPSH_01020 hypothetical protein 188 60 Op 5 . - CDS 189126 - 189539 507 ## COG0105 Nucleoside diphosphate kinase - Prom 189568 - 189627 7.4 189 60 Op 6 . - CDS 189637 - 190332 724 ## COG1427 Predicted periplasmic solute-binding protein - Prom 190426 - 190485 14.1 + Prom 190404 - 190463 12.5 190 61 Tu 1 . + CDS 190488 - 191345 1087 ## COG1639 Predicted signal transduction protein + Term 191366 - 191403 5.7 - Term 191354 - 191391 2.3 191 62 Tu 1 . - CDS 191402 - 191998 773 ## COG0450 Peroxiredoxin - Prom 192118 - 192177 12.3 + Prom 192062 - 192121 7.7 192 63 Tu 1 . + CDS 192157 - 193317 1717 ## COG0192 S-adenosylmethionine synthetase + Term 193325 - 193358 3.5 - Term 193311 - 193347 -0.3 193 64 Op 1 . - CDS 193410 - 194483 758 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 194 64 Op 2 . - CDS 194483 - 194602 84 ## gi|253826760|ref|ZP_04869645.1| glycosyl transferase - Prom 194700 - 194759 7.6 - TRNA 194758 - 194841 56.8 # Leu GAG 0 0 - Term 194837 - 194881 9.1 195 65 Tu 1 . - CDS 194890 - 195210 524 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K - Prom 195293 - 195352 10.5 196 66 Tu 1 . - CDS 195402 - 195698 378 ## COG0854 Pyridoxal phosphate biosynthesis protein 197 67 Tu 1 . - CDS 196070 - 196549 675 ## COG0854 Pyridoxal phosphate biosynthesis protein - Prom 196573 - 196632 5.9 + Prom 196541 - 196600 7.7 198 68 Op 1 . + CDS 196623 - 197444 920 ## COG3298 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB 199 68 Op 2 . + CDS 197459 - 198364 926 ## WS0616 hypothetical protein 200 68 Op 3 . + CDS 198367 - 198567 401 ## COG0118 Glutamine amidotransferase + Prom 198569 - 198628 80.3 201 69 Tu 1 . + CDS 198826 - 199194 269 ## COG0118 Glutamine amidotransferase - Term 199099 - 199145 1.2 202 70 Tu 1 . - CDS 199217 - 201583 2564 ## Spro_3913 outer membrane autotransporter - Prom 201633 - 201692 80.3 - Term 201595 - 201662 31.8 203 71 Tu 1 . - CDS 201694 - 202611 914 ## gi|224418716|ref|ZP_03656722.1| hypothetical protein HcanM9_05508 - Prom 202641 - 202700 14.2 + Prom 202680 - 202739 12.8 204 72 Tu 1 . + CDS 202780 - 203487 1062 ## COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase + Term 203524 - 203556 -0.6 + Prom 203493 - 203552 6.7 205 73 Op 1 3/0.000 + CDS 203605 - 203973 488 ## COG0784 FOG: CheY-like receiver 206 73 Op 2 3/0.000 + CDS 203976 - 204803 1432 ## PROTEIN SUPPORTED gi|224418719|ref|ZP_03656725.1| ribosomal protein L11 methyltransferase 207 73 Op 3 1/0.098 + CDS 204812 - 206743 1163 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 208 73 Op 4 14/0.000 + CDS 206752 - 207357 334 ## COG0688 Phosphatidylserine decarboxylase 209 73 Op 5 1/0.098 + CDS 207357 - 208088 559 ## COG1183 Phosphatidylserine synthase + Prom 208120 - 208179 5.3 210 74 Tu 1 . + CDS 208216 - 208395 385 ## COG0119 Isopropylmalate/homocitrate/citramalate synthases 211 75 Tu 1 . - CDS 208728 - 208964 87 ## - Prom 209097 - 209156 3.4 + Prom 208697 - 208756 43.2 212 76 Op 1 . + CDS 208876 - 210084 1579 ## COG0119 Isopropylmalate/homocitrate/citramalate synthases 213 76 Op 2 . + CDS 210161 - 211093 1181 ## COG2041 Sulfite oxidase and related enzymes 214 76 Op 3 . + CDS 211093 - 211398 255 ## gi|253826745|ref|ZP_04869630.1| hypothetical protein HCAN_0086 + Prom 211684 - 211743 80.4 215 77 Tu 1 . + CDS 211840 - 211998 180 ## 216 78 Tu 1 . - CDS 212017 - 213930 1548 ## NIS_0037 hypothetical protein - Prom 214015 - 214074 11.9 + Prom 213998 - 214057 12.8 217 79 Op 1 3/0.000 + CDS 214084 - 214431 456 ## COG1314 Preprotein translocase subunit SecG 218 79 Op 2 3/0.000 + CDS 214432 - 214992 941 ## COG0233 Ribosome recycling factor 219 79 Op 3 3/0.000 + CDS 215005 - 215616 834 ## COG0461 Orotate phosphoribosyltransferase 220 79 Op 4 . + CDS 215632 - 216102 365 ## COG1714 Predicted membrane protein/domain 221 79 Op 5 . + CDS 216165 - 216845 809 ## COG0356 F0F1-type ATP synthase, subunit a 222 79 Op 6 . + CDS 216829 - 217395 307 ## COG0352 Thiamine monophosphate synthase - Term 217314 - 217352 2.1 223 80 Op 1 10/0.000 - CDS 217392 - 218480 1533 ## COG0473 Isocitrate/isopropylmalate dehydrogenase 224 80 Op 2 . - CDS 218455 - 218940 651 ## COG0066 3-isopropylmalate dehydratase small subunit 225 80 Op 3 . - CDS 218950 - 219168 258 ## gi|224418737|ref|ZP_03656743.1| hypothetical protein HcanM9_05613 - Prom 219200 - 219259 7.5 + Prom 219268 - 219327 5.5 226 81 Tu 1 . + CDS 219405 - 220661 1464 ## gi|224418738|ref|ZP_03656744.1| hypothetical protein HcanM9_05618 + Prom 221770 - 221829 80.4 227 82 Op 1 . + CDS 221951 - 222112 76 ## gi|224418739|ref|ZP_03656745.1| hypothetical protein HcanM9_05623 228 82 Op 2 . + CDS 222173 - 222979 796 ## COG2005 N-terminal domain of molybdenum-binding protein 229 82 Op 3 . + CDS 223013 - 223777 973 ## COG0725 ABC-type molybdate transport system, periplasmic component 230 82 Op 4 . + CDS 223764 - 224165 397 ## gi|253826731|ref|ZP_04869616.1| hypothetical protein HCAN_0072 231 82 Op 5 6/0.000 + CDS 224165 - 224827 547 ## COG4149 ABC-type molybdate transport system, permease component 232 82 Op 6 . + CDS 224824 - 225696 802 ## COG1118 ABC-type sulfate/molybdate transport systems, ATPase component - Term 225571 - 225611 0.6 233 83 Op 1 36/0.000 - CDS 225703 - 226923 387 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 234 83 Op 2 24/0.000 - CDS 226923 - 227651 283 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 235 83 Op 3 13/0.000 - CDS 227652 - 228947 1749 ## COG0845 Membrane-fusion protein 236 83 Op 4 . - CDS 228944 - 230374 1511 ## COG1538 Outer membrane protein - Prom 230422 - 230481 9.0 237 84 Op 1 . + CDS 230496 - 231932 1906 ## COG0174 Glutamine synthetase 238 84 Op 2 1/0.098 + CDS 231969 - 232733 776 ## COG3022 Uncharacterized protein conserved in bacteria 239 84 Op 3 22/0.000 + CDS 232786 - 233529 219 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 240 84 Op 4 27/0.000 + CDS 233594 - 233827 510 ## COG0236 Acyl carrier protein 241 84 Op 5 3/0.000 + CDS 233876 - 235105 1666 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase + Prom 235107 - 235166 2.0 242 84 Op 6 . + CDS 235190 - 236038 1018 ## COG0825 Acetyl-CoA carboxylase alpha subunit 243 85 Tu 1 . + CDS 236413 - 237240 797 ## COG2081 Predicted flavoproteins 244 86 Op 1 8/0.000 - CDS 237255 - 238217 1042 ## COG3301 Formate-dependent nitrite reductase, membrane component 245 86 Op 2 16/0.000 - CDS 238214 - 238783 653 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 246 86 Op 3 5/0.000 - CDS 238793 - 239134 465 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Prom 239288 - 239347 80.4 - Term 239205 - 239243 -0.4 247 87 Tu 1 . - CDS 239471 - 241273 2297 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Prom 241309 - 241368 6.9 + Prom 241658 - 241717 2.1 248 88 Op 1 3/0.000 + CDS 241738 - 242151 248 ## COG0388 Predicted amidohydrolase 249 88 Op 2 . + CDS 242133 - 242363 253 ## COG0726 Predicted xylanase/chitin deacetylase 250 89 Op 1 . - CDS 242993 - 243439 373 ## COG0350 Methylated DNA-protein cysteine methyltransferase - Prom 243467 - 243526 6.1 251 89 Op 2 21/0.000 - CDS 243564 - 244379 679 ## COG0477 Permeases of the major facilitator superfamily - Prom 244584 - 244643 80.3 252 90 Op 1 1/0.098 - CDS 244645 - 245010 401 ## COG0477 Permeases of the major facilitator superfamily 253 90 Op 2 . - CDS 245078 - 245701 619 ## COG1611 Predicted Rossmann fold nucleotide-binding protein 254 90 Op 3 . - CDS 245701 - 246027 390 ## WS1344 hypothetical protein - Prom 246111 - 246170 6.2 + Prom 246070 - 246129 7.6 255 91 Op 1 3/0.000 + CDS 246150 - 247007 1137 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 256 91 Op 2 2/0.024 + CDS 247004 - 247795 748 ## COG0681 Signal peptidase I 257 91 Op 3 2/0.024 + CDS 247798 - 248481 720 ## COG1994 Zn-dependent proteases 258 91 Op 4 . + CDS 248492 - 248917 639 ## COG0698 Ribose 5-phosphate isomerase RpiB 259 91 Op 5 . + CDS 248926 - 249264 454 ## HH1369 hypothetical protein 260 91 Op 6 . + CDS 249280 - 249834 814 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins + Term 249919 - 249958 -0.1 - Term 249566 - 249603 -1.0 261 92 Tu 1 . - CDS 249849 - 250718 956 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Prom 250794 - 250853 78.9 + TRNA 250777 - 250853 81.8 # Arg TCG 0 0 262 93 Op 1 . - CDS 250881 - 251903 1085 ## WS0154 hypothetical protein 263 93 Op 2 1/0.098 - CDS 251900 - 252250 412 ## COG1734 DnaK suppressor protein 264 93 Op 3 3/0.000 - CDS 252285 - 252749 371 ## COG1576 Uncharacterized conserved protein 265 93 Op 4 . - CDS 252742 - 253599 869 ## COG0777 Acetyl-CoA carboxylase beta subunit - Prom 253621 - 253680 9.1 + Prom 253598 - 253657 8.6 266 94 Tu 1 . + CDS 253681 - 254439 567 ## COG4121 Uncharacterized conserved protein 267 95 Op 1 19/0.000 - CDS 254449 - 255510 1055 ## COG1566 Multidrug resistance efflux pump 268 95 Op 2 . - CDS 255510 - 257150 1627 ## COG0477 Permeases of the major facilitator superfamily - Prom 257180 - 257239 3.7 + Prom 257418 - 257477 11.2 269 96 Tu 1 . + CDS 257676 - 258851 1357 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase + Term 258941 - 258967 0.3 - Term 258837 - 258896 4.3 270 97 Tu 1 . - CDS 258956 - 259240 423 ## COG1145 Ferredoxin - Prom 259268 - 259327 8.4 - Term 259265 - 259324 1.3 271 98 Op 1 . - CDS 259373 - 259939 567 ## COG0241 Histidinol phosphatase and related phosphatases 272 98 Op 2 . - CDS 259936 - 260496 321 ## COG1738 Uncharacterized conserved protein - Prom 260741 - 260800 7.2 - Term 260786 - 260816 2.9 273 99 Op 1 21/0.000 - CDS 260828 - 261085 439 ## PROTEIN SUPPORTED gi|224418786|ref|ZP_03656792.1| 30S ribosomal protein S18 274 99 Op 2 24/0.000 - CDS 261097 - 261579 597 ## COG0629 Single-stranded DNA-binding protein 275 99 Op 3 2/0.024 - CDS 261589 - 262017 716 ## PROTEIN SUPPORTED gi|224418788|ref|ZP_03656794.1| 30S ribosomal protein S6 276 99 Op 4 3/0.000 - CDS 262095 - 263096 1143 ## COG1466 DNA polymerase III, delta subunit 277 99 Op 5 . - CDS 263096 - 265246 579 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 278 99 Op 6 . - CDS 265243 - 266061 713 ## COG1639 Predicted signal transduction protein - Prom 266089 - 266148 7.6 + Prom 266103 - 266162 5.5 279 100 Op 1 4/0.000 + CDS 266184 - 267182 1149 ## COG0451 Nucleoside-diphosphate-sugar epimerases 280 100 Op 2 5/0.000 + CDS 267183 - 268706 1220 ## COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase 281 100 Op 3 . + CDS 268709 - 269278 752 ## COG0279 Phosphoheptose isomerase 282 100 Op 4 . + CDS 269317 - 269721 464 ## gi|253826682|ref|ZP_04869567.1| hypothetical protein HCAN_0022 - Term 269530 - 269575 -0.3 283 101 Tu 1 . - CDS 269725 - 270507 981 ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 - Prom 270609 - 270668 8.5 + Prom 270648 - 270707 7.6 284 102 Op 1 5/0.000 + CDS 270736 - 271068 449 ## COG0640 Predicted transcriptional regulators 285 102 Op 2 . + CDS 271082 - 273037 2189 ## COG2217 Cation transport ATPase + Prom 273050 - 273109 6.3 286 103 Tu 1 . + CDS 273154 - 273351 258 ## gi|224418799|ref|ZP_03656805.1| hypothetical protein HcanM9_05923 + Term 273556 - 273592 0.2 + Prom 273595 - 273654 6.1 287 104 Op 1 . + CDS 273683 - 273976 395 ## BpOF4_07515 small multidrug resistance protein 288 104 Op 2 . + CDS 273973 - 274287 411 ## COG2076 Membrane transporters of cations and cationic drugs + Term 274383 - 274417 2.2 289 105 Op 1 . - CDS 274317 - 274904 662 ## COG3334 Uncharacterized conserved protein 290 105 Op 2 . - CDS 274901 - 275101 252 ## gi|224418803|ref|ZP_03656809.1| hypothetical protein HcanM9_05943 - Prom 275214 - 275273 80.3 291 106 Tu 1 . - CDS 275875 - 276507 491 ## WS2057 ATP phosphoribosyltransferase regulatory subunit - Prom 276534 - 276593 8.2 + Prom 276552 - 276611 8.7 292 107 Op 1 . + CDS 276631 - 276948 404 ## gi|224418805|ref|ZP_03656811.1| hypothetical protein HcanM9_05955 + Prom 276963 - 277022 8.7 293 107 Op 2 3/0.000 + CDS 277042 - 278319 1822 ## COG0460 Homoserine dehydrogenase 294 107 Op 3 . + CDS 278319 - 278675 320 ## COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase - Term 278549 - 278588 -1.0 295 108 Tu 1 . - CDS 278672 - 279139 554 ## COG0780 Enzyme related to GTP cyclohydrolase I - Prom 279186 - 279245 4.9 - Term 279204 - 279238 1.3 296 109 Op 1 . - CDS 279249 - 280457 1436 ## COG0786 Na+/glutamate symporter - Prom 280483 - 280542 8.0 297 109 Op 2 . - CDS 280555 - 281841 1309 ## COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 298 109 Op 3 . - CDS 281904 - 282305 661 ## Cla_1502 hypothetical protein - Prom 282363 - 282422 8.5 299 110 Op 1 . - CDS 282473 - 283120 635 ## COG0344 Predicted membrane protein 300 110 Op 2 5/0.000 - CDS 283130 - 285448 3459 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 301 110 Op 3 16/0.000 - CDS 285475 - 286542 1227 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) - Prom 286562 - 286621 5.3 302 110 Op 4 . - CDS 286708 - 288000 1336 ## COG0593 ATPase involved in DNA replication initiation - Prom 288094 - 288153 7.7 + Prom 288033 - 288092 7.7 303 111 Op 1 . + CDS 288131 - 288613 396 ## COG0817 Holliday junction resolvasome, endonuclease subunit 304 111 Op 2 . + CDS 288615 - 289253 548 ## COG1351 Predicted alternative thymidylate synthase 305 111 Op 3 . + CDS 289250 - 289894 723 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Term 289701 - 289737 2.1 306 112 Op 1 . - CDS 289937 - 291046 1125 ## COG1636 Uncharacterized protein conserved in bacteria - Prom 291077 - 291136 8.7 - Term 291084 - 291118 -0.4 307 112 Op 2 . - CDS 291152 - 291907 736 ## COG0820 Predicted Fe-S-cluster redox enzyme - Prom 292046 - 292105 80.4 - Term 292010 - 292079 16.5 308 113 Tu 1 . - CDS 292200 - 292373 249 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) - Prom 292433 - 292492 10.9 + Prom 292379 - 292438 8.1 309 114 Op 1 . + CDS 292466 - 293683 1229 ## COG0137 Argininosuccinate synthase 310 114 Op 2 2/0.024 + CDS 293686 - 293952 131 ## COG0270 Site-specific DNA methylase + Prom 293965 - 294024 7.0 311 115 Tu 1 . + CDS 294076 - 294651 460 ## COG0270 Site-specific DNA methylase + Prom 294664 - 294723 1.7 312 116 Tu 1 . + CDS 294763 - 295197 272 ## HSM_0802 hypothetical protein 313 117 Tu 1 . - CDS 295587 - 297773 2422 ## COG2838 Monomeric isocitrate dehydrogenase - Prom 297798 - 297857 7.0 314 118 Op 1 . - CDS 297946 - 299391 1760 ## COG0305 Replicative DNA helicase 315 118 Op 2 . - CDS 299375 - 300121 528 ## Arnit_2263 hypothetical protein 316 118 Op 3 5/0.000 - CDS 300173 - 300904 595 ## COG0500 SAM-dependent methyltransferases 317 118 Op 4 5/0.000 - CDS 300904 - 301542 462 ## COG2830 Uncharacterized protein conserved in bacteria 318 118 Op 5 . - CDS 301526 - 302698 760 ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes 319 118 Op 6 3/0.000 - CDS 302710 - 303852 1351 ## COG0505 Carbamoylphosphate synthase small subunit 320 118 Op 7 . - CDS 303852 - 304403 823 ## COG2952 Uncharacterized protein conserved in bacteria 321 118 Op 8 . - CDS 304457 - 305065 591 ## COG0132 Dethiobiotin synthetase 322 118 Op 9 10/0.000 - CDS 305065 - 306426 1575 ## COG1760 L-serine deaminase 323 118 Op 10 . - CDS 306434 - 306955 690 ## COG0814 Amino acid permeases 324 119 Op 1 . - CDS 307323 - 307538 172 ## gi|253828176|ref|ZP_04871061.1| hypothetical protein HCAN_1536 325 119 Op 2 . - CDS 307535 - 308341 461 ## gi|224418836|ref|ZP_03656842.1| hypothetical protein HcanM9_06130 326 119 Op 3 . - CDS 308338 - 308565 214 ## gi|224418837|ref|ZP_03656843.1| hypothetical protein HcanM9_06135 - Prom 308591 - 308650 12.3 + Prom 308577 - 308636 10.1 327 120 Op 1 . + CDS 308662 - 309726 806 ## gi|224418838|ref|ZP_03656844.1| hypothetical protein HcanM9_06140 328 120 Op 2 . + CDS 309723 - 310265 299 ## gi|224418839|ref|ZP_03656845.1| hypothetical protein HcanM9_06145 329 120 Op 3 . + CDS 310262 - 310519 233 ## gi|224418840|ref|ZP_03656846.1| hypothetical protein HcanM9_06150 330 120 Op 4 . + CDS 310516 - 312006 1476 ## COG1450 Type II secretory pathway, component PulD 331 120 Op 5 . + CDS 312007 - 312666 690 ## WS0542 hypothetical protein + Term 312693 - 312727 -0.8 + Prom 312669 - 312728 1.6 332 121 Op 1 24/0.000 + CDS 312813 - 314171 1155 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 333 121 Op 2 . + CDS 314171 - 315367 868 ## COG1459 Type II secretory pathway, component PulF 334 121 Op 3 . + CDS 315440 - 316168 891 ## COG1651 Protein-disulfide isomerase 335 121 Op 4 23/0.000 + CDS 316170 - 317285 1133 ## COG0767 ABC-type transport system involved in resistance to organic solvents, permease component 336 121 Op 5 13/0.000 + CDS 317286 - 318017 293 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 337 121 Op 6 . + CDS 318027 - 318824 665 ## COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component 338 121 Op 7 . + CDS 318834 - 319385 473 ## gi|224418849|ref|ZP_03656855.1| hypothetical protein HcanM9_06195 339 121 Op 8 . + CDS 319397 - 319732 314 ## WS0005 hypothetical protein 340 121 Op 9 . + CDS 319758 - 320237 628 ## COG1225 Peroxiredoxin 341 122 Op 1 . - CDS 320226 - 320465 365 ## WS0068 hypothetical protein 342 122 Op 2 1/0.098 - CDS 320525 - 321514 632 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 343 122 Op 3 . - CDS 321501 - 321992 414 ## PROTEIN SUPPORTED gi|229530839|ref|ZP_04420225.1| SSU ribosomal protein S12P methylthiotransferase - Prom 322027 - 322086 80.3 344 123 Op 1 . - CDS 322088 - 322921 545 ## PROTEIN SUPPORTED gi|227372256|ref|ZP_03855738.1| SSU ribosomal protein S12P methylthiotransferase 345 123 Op 2 . - CDS 322923 - 323498 777 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 346 123 Op 3 . - CDS 323507 - 325294 1799 ## WS0441 hypothetical protein - Prom 325322 - 325381 5.7 + Prom 325208 - 325267 6.8 347 124 Tu 1 . + CDS 325378 - 326787 467 ## PROTEIN SUPPORTED gi|163803542|ref|ZP_02197411.1| 30S ribosomal protein S20 - Term 326860 - 326911 -0.8 348 125 Op 1 . - CDS 326954 - 327877 1100 ## COG0731 Fe-S oxidoreductases - Prom 327903 - 327962 5.5 349 125 Op 2 . - CDS 327987 - 328529 685 ## COG2353 Uncharacterized conserved protein - Prom 328567 - 328626 10.6 350 126 Op 1 . - CDS 328740 - 329660 682 ## COG0500 SAM-dependent methyltransferases 351 126 Op 2 . - CDS 329660 - 329863 299 ## gi|224418863|ref|ZP_03656869.1| hypothetical protein HcanM9_06265 - Prom 329903 - 329962 3.2 352 127 Op 1 . - CDS 329975 - 331900 2095 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 353 127 Op 2 . - CDS 331893 - 332756 1012 ## COG0682 Prolipoprotein diacylglyceryltransferase 354 127 Op 3 . - CDS 332692 - 332919 121 ## gi|224418867|ref|ZP_03656873.1| hypothetical protein HcanM9_06285 - Prom 333119 - 333178 80.3 + Prom 333275 - 333334 80.3 355 128 Op 1 7/0.000 + CDS 333489 - 333785 341 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 356 128 Op 2 4/0.000 + CDS 333786 - 335594 1989 ## COG1086 Predicted nucleoside-diphosphate sugar epimerases 357 128 Op 3 . + CDS 335578 - 336553 805 ## COG0438 Glycosyltransferase Predicted protein(s) >gi|197325097|gb|DS990369.1| GENE 1 93 - 404 224 103 aa, chain + ## HITS:1 COG:Cj1654c KEGG:ns NR:ns ## COG: Cj1654c COG3004 # Protein_GI_number: 15792959 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter # Organism: Campylobacter jejuni # 2 100 287 385 389 142 81.0 1e-34 MLFSGVSIGIFLGLFIGKQIGVFSFAYLAIKLKLAKLPQKANFKQLYGVCILTGIGFTMS LFIDGLAYEVSDIFDYADNLSILLASFCSGICGFIFLRFFAKS >gi|197325097|gb|DS990369.1| GENE 2 401 - 1417 1065 338 aa, chain - ## HITS:1 COG:CAC2187 KEGG:ns NR:ns ## COG: CAC2187 COG2089 # Protein_GI_number: 15895456 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sialic acid synthase # Organism: Clostridium acetobutylicum # 5 338 17 348 350 369 54.0 1e-102 MHKNKVLLVAELSANHNQNKEIALKTIKAAKESGADAIKLQTYTPECLTLDSHLKYFKIQ GTLWEGKNFYQLYKEAMTPWEWHRELFSYVRELGMICFSSPFSKEAVDFLETLENPIYKV ASFEIVDLELIAYMAKQKKPMILSKGIASKEEIEEAIQVCRENGAQDITLLQCTSSYPAP LNEANLSLIPKMARDFKVKVGLSDHTLGITAAIVAASLGASVIEKHFILDKNLGGPDSAF SMEPKEFSIMAKAIREVEELLGEETYELSKKSKEGRVFMRSLFVVEDIAKGEIIKPNQIR SIRPGFGIPPKMKTQVIGKKASKDLKRGEPLSFGDWEV >gi|197325097|gb|DS990369.1| GENE 3 1482 - 1865 425 127 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418518|ref|ZP_03656524.1| ## NR: gi|224418518|ref|ZP_03656524.1| hypothetical protein HcanM9_04485 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0275 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0275 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 127 1 127 127 147 100.0 2e-34 MKKSIFNILCLLLLCGCDEIAQKGSQTLQETLENSGLKDTLIDKSEKLNDFNNQAKDFLQ EQGEILQKEIEKALEDNKTKELLEEQMKSLNNLLEGKSKNKTQDQKSDTPNEKEFSPSNT TEEIFRL >gi|197325097|gb|DS990369.1| GENE 4 4250 - 6205 1881 651 aa, chain + ## HITS:1 COG:no KEGG:Kkor_0950 NR:ns ## KEGG: Kkor_0950 # Name: not_defined # Def: hypothetical protein # Organism: K.koreensis # Pathway: not_defined # 423 651 773 998 1045 108 32.0 8e-22 MDISNLTAPKGGFKIASNAISPNTTLLTNDYNLILPTDPIKLAINGEAKGENILATILAT SSYLNLNSNNLALNLKDYSSNGDLKLTLQNIVASGFSLKKPINANLNLKSTHIANQEANL ILNIIANPILANLSLPNYTPKNLTLNAKELNLKEILEFASLPYDAKGTLNLDAKVNEIDL ANLSYKLTANLNSNIQSIVFNNLNLANNNTLNANIKGDSKTLEILANSDLFDSKLKANAL LENYAPQTISLDLQNLNLQKLAKLFQYNADGFLNAKINLKNFKDSNFDGNFNLYSQNITI AKNTLNALSGMTFKKDIAFSLNGDGKFSNGAGQAELKANGQDINIEITNTKINLKDNAYS TDFFINTQNIANINPIAMELQGPLTLKGKAALENNIPTFYLQNQDFGNLTIDLANEKLKL TGENLDIKKIANFTGNGKIIKGGIINTNANLTFKGMDAPTILSNLNGPFSLSGNNIEIYS IDIDALAKNLEKSNEINLLDIGAFVLAGPIGIAATKGSNVGMLGLNTLIDTKTAIKQLEM QLDIQKGIAYAKDVAFATGKTRIAAIGAINLNNNAFENFSIGVLDSQNCAKYSQAIKGTL TDPKIEVTKTAISTAVNLATSLLGKFKKGAEKIINTQDKCKPFYNGVVKQP >gi|197325097|gb|DS990369.1| GENE 5 6255 - 7013 861 252 aa, chain + ## HITS:1 COG:HP1526 KEGG:ns NR:ns ## COG: HP1526 COG0708 # Protein_GI_number: 15646134 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Helicobacter pylori 26695 # 1 249 1 249 250 373 69.0 1e-103 MKLISWNVNGLRACMNKGFMDFFETVNADVFCIQESKMQREQATFDFPNYEEYWNSAEKK GYSGVAIFSKTKPLSVAYDMGIAHHDKEGRIICAEYKDFYLVNVYTPNSKRELERLSYRM EWEDDFRAYLKNLEKTKPVIVCGDLNVAHQEIDLKNPKTNRRNAGFTDEEREKMTQLLDS GFTDTFRHFYPTLEGAYSWWSYMGKARENNTGWRIDYFLCSKALDSKLLDAKIYPEVFGS DHCPVGLEINAQ >gi|197325097|gb|DS990369.1| GENE 6 7003 - 7461 471 152 aa, chain + ## HITS:1 COG:jhp1087 KEGG:ns NR:ns ## COG: jhp1087 COG0319 # Protein_GI_number: 15612152 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Helicobacter pylori J99 # 5 152 2 141 141 121 51.0 4e-28 MHNKIDFDNQTDFKISDDLFLFLEKVFDKILLDLGLKNKQCELLLVDNPTIQNLNKIHRN KDKPTDVLSFPLESDFSPLLGSIVISLDFIKQNSEKYHHTPNDEMALLFIHGILHLLGFD HEKDRGEQRQKEKELIDFFHLPPSLIIRNQEC >gi|197325097|gb|DS990369.1| GENE 7 7455 - 7991 456 178 aa, chain + ## HITS:1 COG:ECs2434 KEGG:ns NR:ns ## COG: ECs2434 COG1988 # Protein_GI_number: 15831688 # Func_class: R General function prediction only # Function: Predicted membrane-bound metal-dependent hydrolases # Organism: Escherichia coli O157:H7 # 1 131 5 133 200 82 38.0 6e-16 MLGKTHLAFGLGVASCGIYAINFLGQTQLSSQDLILFYSAIGIGVLLPDIDEPQSLIGRK TLGISNLIKFFFGHRGFTHSLLFILLLAIALGALNYFKILPLILAIGLVLGCILHLIGDM MTPSGVPLLMPFNLKNYHILPKALQFKTGGIFDYLIGIISSSAFIYCNAKPLQKYFLI >gi|197325097|gb|DS990369.1| GENE 8 8023 - 8805 707 260 aa, chain + ## HITS:1 COG:HP0215 KEGG:ns NR:ns ## COG: HP0215 COG0575 # Protein_GI_number: 15644843 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Helicobacter pylori 26695 # 9 255 8 251 266 168 42.0 8e-42 MLNQLKTLEPKRLYTAFFMLIAVVLIIFFHNPFLLWSVLGIAYVVAFYEAYKLYNKESPK WFFLLFCVLIWISIFFYPSLNGLFVVLVLLASYQAYTKKGKIEQMMPFIYPTIPFILLYF LYLEYTINAIVWLIFIVALTDSFAYFGGKLLGGKLFSNSTFCVTSPNKTKEGVLIGMSCA VIVGTLVGLGVCEFFTSFIFSVCVSIASVFGDLYESYLKRKAEVKDSGNIFPGHGGMLDR LDGYFFGSIILYTLLTTIQR >gi|197325097|gb|DS990369.1| GENE 9 8810 - 9934 1115 374 aa, chain + ## HITS:1 COG:HP0216 KEGG:ns NR:ns ## COG: HP0216 COG0743 # Protein_GI_number: 15644844 # Func_class: I Lipid transport and metabolism # Function: 1-deoxy-D-xylulose 5-phosphate reductoisomerase # Organism: Helicobacter pylori 26695 # 1 373 1 365 368 346 53.0 5e-95 MIILGSTGSIGINALAIAKRFSLEIETLSAGKNISLLNEQILEFNPKNIVIANKQDIPKI TKKFSGKIYYGKEGILEAISTSKSSLVINALVGFLGLEPTLHSLKEGKKVALANKESLVV GGDFIDTSKIIPIDSEHFSLAYLMNFNSQIRPFKNLYITASGGAFRDTPLEEIPLQNATN ALKHPNWKMGKKITIDSATMVNKLFEVLEAHWLLKTQNIDAYIERNSQIHALVEFWDGSI VAHFANANMQLPIAYAITYGLGLKEEFLQSFSHSPLIPSINFVNQHYTLEPICTKRYPLW NLKNSLLENPKLGVILNAANEVAVEAFLCHTIPFGEIVTIIQKTLDYFHQTLPNSLNEVF VLDFEVRKFAQNLL >gi|197325097|gb|DS990369.1| GENE 10 10012 - 10980 1240 322 aa, chain + ## HITS:1 COG:jhp0437 KEGG:ns NR:ns ## COG: jhp0437 COG0753 # Protein_GI_number: 15611504 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Helicobacter pylori J99 # 11 322 4 314 314 337 54.0 1e-92 MLKNFKKVLTICASTCLLGTFVNAQETIYDPDKIAEIFYRLNGDPNDSKARVNHKKGFCA NATFIADKNFNLSNLNIPLFNQATIPVQVRYSLGGAIQDDRSKQRGMALKFMGNEDSWTM VMLNTEINFAKNPKEFGQFFEMKIPNLMDQKTIDDLNNNVDSYKNFSAYLDKIGISSLEH TPFYSIHTFWFKEKGKDKTIPARWKFIPKDGISYLSQSELKSASKDFLKEDFIAYTKNKP IEYQMYLEFPNKGDAVDDTTALWTGDHKTLLVGTLKVEKYDGEACNQDVYFPSELPSGVE APIDPLFDLRTPTYAITFGKRQ >gi|197325097|gb|DS990369.1| GENE 11 11026 - 11982 1203 318 aa, chain - ## HITS:1 COG:Cj0726c KEGG:ns NR:ns ## COG: Cj0726c COG0598 # Protein_GI_number: 15792075 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Campylobacter jejuni # 1 318 1 327 327 343 59.0 2e-94 MLNLFTKRNGMVVRETIASVKNIEIDADILWIDLLHPNAEEIAYISKTYLLDIPTKEERE EIEESARYWEDSETVTINTYFLTRPNEEKIFHNETITFLITHNILFTVRYSEFKVFDEIQ QRVLASPKHFEDGFDLISKIFELRVEKDADMLEGIAKETRLLRRLVVFDKQLGDEVLEKL SILQEMHLSLRDSLFDKRLAITALLRTNKADSEVKKDLGIVLKDINSLVEFTNVNMNILD NIQTLFASQINIEQNKIIKIFTVVTVAMMPPTLIATIYGMNFKHMPELEWAYSYPIVLAV MIVSTILPLLYFKKKKWL >gi|197325097|gb|DS990369.1| GENE 12 12005 - 13216 1747 403 aa, chain - ## HITS:1 COG:HP1345 KEGG:ns NR:ns ## COG: HP1345 COG0126 # Protein_GI_number: 15645958 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Helicobacter pylori 26695 # 1 401 1 401 402 520 65.0 1e-147 MSKNIQLMQNVKSIREVDIKGKRVLIRVDFNVPMDDELNISDDSRIREAIPTINYCIDNG AKSIILVSHLGRPKGKSDEFSLKHVLKRLERLLAKDVVFVESLENAQVTLNTLVDGSIVL LENIRFYEGEEKNDSVLSQKLANLCDVYVNDAFGTSHRKHSSTYGIAEYAKEKVAGLLLK KEIDSFAVALSNPLRPLLLIVGGSKVSSKLTLLKSILEVVDKIIIGGAMSNTFLKAIGYD TKSSLVENDLLEEAKDILRSAKEKGVKVYLPVDVVATDNVKDPKEIKITPAQDIPDGLMV VDIGPATVKLFNEVIRVSETIIWNGPLGVYEQQKFSRGTFSIAHTIADTYAYSVIGGGDT ADAVDKAGNKDSMSFTSTGGGASLELLEGVVLPAFEVLDKKGC >gi|197325097|gb|DS990369.1| GENE 13 13287 - 14297 850 336 aa, chain - ## HITS:1 COG:HP0244 KEGG:ns NR:ns ## COG: HP0244 COG0642 # Protein_GI_number: 15644872 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Helicobacter pylori 26695 # 4 330 48 375 381 297 53.0 3e-80 MIDQNLLESLSSSDKESFAKGLKELITQTYEVEKEFVELKALFEEVLDILPTAVWVLEQG GEIFYQNSLASEIPELLEAFDLQKTKRQEIELDSKVYLVQTNQKLNKIIISATDITSEKR RERLASMGQISAHLAHGGGGPVGSVALLASTLLKRVDIKNKTLVLEIKKSIWRVERIIKA TLLFSKGVHIQKSEIDPQKLQDELQESLNYYTYSKNIHFAFDLNGEFFEADFDLLCIVLQ NFLFNAIDAIEEGEEEEGVVEISYQKTDKEAVFRIFDNGKPIENPQILFEPFKSTKLKGN GLGLALSLQIIQAHEGSIELLAGNKKGFEIILPQSV >gi|197325097|gb|DS990369.1| GENE 14 14294 - 14614 469 106 aa, chain - ## HITS:1 COG:no KEGG:WS1591 NR:ns ## KEGG: WS1591 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 12 101 7 97 100 100 59.0 2e-20 MEINFNHLNGYSKDILDAAKQAPTIQKTDDDTRLREQTDAFEALIIKNMLDTALKMDDSL YPKAPGHDIYESMYRDTLSESLSGSFGFSDLLFDYLKDLQSKQGSK >gi|197325097|gb|DS990369.1| GENE 15 14626 - 15684 1464 352 aa, chain - ## HITS:1 COG:Cj1462 KEGG:ns NR:ns ## COG: Cj1462 COG1706 # Protein_GI_number: 15792779 # Func_class: N Cell motility # Function: Flagellar basal-body P-ring protein # Organism: Campylobacter jejuni # 7 352 4 348 348 331 54.0 1e-90 MKKIIPLLFSLFLVTPIFAAKVSDLVNIVGVRDNQLIGYGLVVGLNGSGDKTTSTFTMQS ISNMLESVNVKIDPNDIQSKNVAAVMVTAKLPPFARQGDTIDILVSSIGDAKSLEGGTLL LTPLSGLDGRIYAVAQGAVGIGGKNERGGSANHSLAATMPNGGIVEREVVYDLYNKVNAT LSLKEANFQNAMRIQTRINETFGANPENKPIATAIDPRTIKLQRPENLSMVEFLARVQEI DVDYVREDKIIINEKTGTVIAGMGVEVSPVVVTHNNITIKVSNEATNDPEAVDMGSGAVF SPQQAMVTSPNNPTISSVTRALQRMGATPKDMIAIIETMKKAGAFNADLEII >gi|197325097|gb|DS990369.1| GENE 16 16074 - 16832 704 252 aa, chain + ## HITS:1 COG:HP0329 KEGG:ns NR:ns ## COG: HP0329 COG0171 # Protein_GI_number: 15644957 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Helicobacter pylori 26695 # 2 250 3 254 260 240 49.0 2e-63 MKDYSKIITKLVEFLQTEVQKRGFKSVVFGLSGGIDSAVVAVLCKQAFGLNHHAILMPSL QSSKSSLEDALELCKTFDISHSILPLEKPQKGFLDTLEGLENNPARMGNLCARIRMIYLY DYAFAKNALVIGTSNKSEILLGYGTIFGDLACAINPIGNLYKTEIFEIAKLLNLPQSIQT KAPSADLYEGQSDEKELGFSYQILDNIMQLLEQGFSKQEILDKNLPKKAVDIVIQRIKTM EFKRKIPEIAPL >gi|197325097|gb|DS990369.1| GENE 17 16844 - 17974 1271 376 aa, chain + ## HITS:1 COG:MJ1066 KEGG:ns NR:ns ## COG: MJ1066 COG0399 # Protein_GI_number: 15669255 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Methanococcus jannaschii # 4 373 7 383 386 202 33.0 7e-52 MLKIPYFIPDITESEKKLINHVLENPSYNITQDLEEAFKNYTGIKYAISANSGTAAFHLC LFAMDIKRGDKILCSVNCHPSFPEIIRHFDAEPIFVDIMEDTFEISYEKCKETLEKNNLK KTRAIIVSHIAGQFCDTEPFYKLAEHYNLKIIEDATMALGLTHNDIKIGNQKSYATIFSI VLDSSSPVAQAGILATHDEKLANQATLLRYHGIVSEKVTSVRPQYLYDVVGVGNKYNLSY LDAALCLSQLQRMDYIIKRRKEIASYYMQNLANTPHISMPVVKNEHIFFHFIIKIDKNRD HFAKELKESGIETALHFVPLHLLTYYKSKYKFKISDFPIALKNYQQILSLPIYSAMKKED IDYICKEISRLATHRV >gi|197325097|gb|DS990369.1| GENE 18 17976 - 18878 842 300 aa, chain + ## HITS:1 COG:HP0328 KEGG:ns NR:ns ## COG: HP0328 COG1663 # Protein_GI_number: 15644956 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Tetraacyldisaccharide-1-P 4'-kinase # Organism: Helicobacter pylori 26695 # 4 299 8 304 312 314 56.0 2e-85 MRTLEKYFFAPSLPQKILAYCLLPISLIYCFIATLKRKISLQQDFQIPIISVGNLILGGS GKSPFVAEIAKDYELSCVILRGYGRKSKGLKVISQNGNILETPEVAGDEAIMLAKLLPNA SVIVSKNRTKAILKAKEMGARIIFLDDGFRFNFKKLNILLKPKLEPYFSFCIPSGGYRES KRAYKEADIIAKEGQDYTRKVELLYPTQRMLLLTAIANPSRLDSYLPNVVGKIILKDHSY FDKTKILESYANLNATSLLITQKDAVKLEDFGLPLSILHLELSISPNIKEKIQKYIQSYS >gi|197325097|gb|DS990369.1| GENE 19 18909 - 19628 596 239 aa, chain - ## HITS:1 COG:Cj0753c KEGG:ns NR:ns ## COG: Cj0753c COG0810 # Protein_GI_number: 15792093 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein TonB, links inner and outer membranes # Organism: Campylobacter jejuni # 1 239 1 227 227 90 32.0 4e-18 MKTLASQHKLNNSTLQSFLVASGIYAIIFLSLFYGSSYFLPKDIGLQTQTMAISLTHFTQ SPAVQKSAPPPMQEEIKTPQKPKVMEKPKEIKKIEPIKEKIVQNSKPISKPKPKPTTNQM AKTQPPTNTPNISNTQANQASSTLTFGKVNDPFLLSVKQAIDKNLQYPRKARMLRMTGIV MVEFKLFKNGELGNVKVIQPSKHTLLDESAIKTILSAGRDFPTPKNDVIIQIPIQYVLT >gi|197325097|gb|DS990369.1| GENE 20 19591 - 19977 600 128 aa, chain - ## HITS:1 COG:HP1340 KEGG:ns NR:ns ## COG: HP1340 COG0848 # Protein_GI_number: 15645953 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport protein # Organism: Helicobacter pylori 26695 # 1 127 1 129 129 122 57.0 1e-28 MVKIPKNESLNIVPFIDIMLVLLAIVLSVSTFIAQGKIQIELPQSTNQEQQKDEKKVQIV VDKDNQIYLDEKAISLEALKVELEKLDSKTLVELRSDKDAKFETFIQIIDILKGKAHENF SIATQAKQ >gi|197325097|gb|DS990369.1| GENE 21 19961 - 20398 683 145 aa, chain - ## HITS:1 COG:Cj1628 KEGG:ns NR:ns ## COG: Cj1628 COG0811 # Protein_GI_number: 15792933 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Campylobacter jejuni # 1 139 1 139 141 179 69.0 2e-45 MEILKETIDYIIFGILGIMGFIALWLTIERVIFFSKIKFSDYKTQESFDDAITKHLTTLY IIYSNAPYVGLLGTVIGIMITFYDMGMSGSIDTKEIMTGLSLALKATALGLAVAIPTLIA YNALYRKITLLSNLYKTKETYGQDS >gi|197325097|gb|DS990369.1| GENE 22 20910 - 21044 131 44 aa, chain - ## HITS:1 COG:no KEGG:CJE1111 NR:ns ## KEGG: CJE1111 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_RM1221 # Pathway: not_defined # 3 44 328 369 428 77 83.0 2e-13 MVGYRKGMAQGYGTDTPNDWSEEKEQLFNDTLILHAKLAALTSP >gi|197325097|gb|DS990369.1| GENE 23 21238 - 21396 70 52 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|313142065|ref|ZP_07804258.1| ## NR: gi|313142065|ref|ZP_07804258.1| predicted protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 52 1 52 52 67 100.0 4e-10 MDPFCSALLYTIFILPIIYFFKWWELWLVIGFIFYHITMEAFKNKFLLKDLL >gi|197325097|gb|DS990369.1| GENE 24 22083 - 22313 185 76 aa, chain - ## HITS:1 COG:no KEGG:Cla_1151 NR:ns ## KEGG: Cla_1151 # Name: not_defined # Def: hypothetical protein # Organism: C.lari # Pathway: not_defined # 1 68 180 247 252 90 67.0 3e-17 MPCYGTKEHLLTKLSQIRQARNEIFHNKSTKMKFRKELEILLLRLDYCLEDVIEIGEIST GINLKYNYKQQYTNEL >gi|197325097|gb|DS990369.1| GENE 25 22280 - 22858 332 192 aa, chain - ## HITS:1 COG:no KEGG:Cla_1151 NR:ns ## KEGG: Cla_1151 # Name: not_defined # Def: hypothetical protein # Organism: C.lari # Pathway: not_defined # 1 181 1 178 252 147 51.0 2e-34 MGFSLQNLEYEKIKALFCDFPNLLNKNFEVRMKKALSVLHFAYLWGACREAEKALAKYEK DDLYEFIMQLYIKRIKTHQANFLLLHYFENALRSTLCVKIANFYNKDNGDSWFIDQTSNS SSSKVVVKLIQIRRKHLKNKKAKNSWEIFDCFYLRDLEDIISSHWDIFAPIFKDKKIIKG KNCHVMAQKNIY >gi|197325097|gb|DS990369.1| GENE 26 23121 - 24839 2617 572 aa, chain - ## HITS:1 COG:Cj0013 KEGG:ns NR:ns ## COG: Cj0013 COG0129 # Protein_GI_number: 15791412 # Func_class: E Amino acid transport and metabolism; G Carbohydrate transport and metabolism # Function: Dihydroxyacid dehydratase/phosphogluconate dehydratase # Organism: Campylobacter jejuni # 1 571 1 558 558 766 69.0 0 MRSDIIKQGYQRAPHRSLLRATGLKDEDFNKPFIGVANSYIDIIPGHFFLNKYAEIIKEE IRKAGGVPFEFNTIGVDDGIAMGHNGMLYSLPSRELIADCIETVMNAHSLDAMICIPNCD KIVPGMLMGALRVNVPTIFVSGGPMMAGKLSDGSVLDLNSAFEAVGAFESGKIDEKRLHE IECNACPGGGSCSGMFTANSMNTLCEAMGVALMGNGTIPALTKEREELLRKAARRIVEIA LDSQKSEQFRFRNILNHKAVHNAFVVDMAMGGSTNTVLHMLAIAKEAEVEFNLQNINEIA KNVAHIAKIAPALSSVHMEDINRAGGVSAVMNEVAKRDTQTLFLDALTITGETLGERIKG KEITDTHIIHTNENAYSQVGGLKILFGNLAEQGAVLKVAAVAESMKEFKGKAICFNSQAE AIKGIAGGKVKAGNVVVIRYEGPKGGPGMQEMLSPTSLIMGMGLGECVALITDGRFSGAT RGACIGHVSPEAAEGGLIALIEDGDEIEISVARGELNLLVDSKELESRKAKWQQQGVAKT IMTNKNITSKWLKRYSLLVSNAANGAVLKTEL >gi|197325097|gb|DS990369.1| GENE 27 24851 - 25399 552 182 aa, chain - ## HITS:1 COG:no KEGG:WS1771 NR:ns ## KEGG: WS1771 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 7 178 10 181 183 83 26.0 4e-15 MKAFFAQIDWVRNTFFFVFYFFLVMVIFIAIIKPQLDVFKKTNANYRKEVFALNQIQSQH DSQKQELLDYQKQNIEILRAFETPTTLQEIEEKLKIIFDTSGVVQDGEPIKEGEYFKQRY VVSGKVKTIETLKNALNLTQNFNAIMRFNFPIHIEKENGMLVFSFRLDVYYSSKDSSILI NN >gi|197325097|gb|DS990369.1| GENE 28 25396 - 25914 483 172 aa, chain - ## HITS:1 COG:no KEGG:WS1772 NR:ns ## KEGG: WS1772 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 168 11 178 179 148 50.0 7e-35 MNYSFISPNKKTLLKKVSRIWWGYIFLTLFIFFGFVVTLKIQGYFMEMKTTEALEAQKIA LDEIKKFQEIQLQEEQRVEFGKFIANQNVMLKESVENLFDLIPEQITLNKIQMEQYQLVL YGATPSKQIYTFLLEVPLRSIFHQSRADFYLLPNGWYNFVSVSKLNKEEQTK >gi|197325097|gb|DS990369.1| GENE 29 25914 - 26960 1214 348 aa, chain - ## HITS:1 COG:no KEGG:WS1773 NR:ns ## KEGG: WS1773 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 335 1 337 351 201 36.0 4e-50 MNLTKIIHHFFSTAIVGIEIDNKNCNVVVKFYRGGKHIRTQTKTFKTIPGELPAQAVWFI RKIYAKNPFTYIVALSSSIIQGAINTNRKEDFSQYGINADEVVKKSFSDGWSVYVSKEGI AETKKRFLKLGVDFIISPFLVLYHLAKDTFQENHCKLYILFQRSNMTMIVTKSNSGVLFG GYYALESEIDSELKIVKNSFNQEEEEESADITKDIQQELSEIGDVDLDNEEGDDALIEIL KGEDKQEEEIKDENLEQDNDDLDDFSRVNMATKFIQSAMSEFYSNDIYKSEFITEIVLFN PNNISTETLKQIQNFTMLEVKIMPCNIAETLVDLGFESYQFFEARGEV >gi|197325097|gb|DS990369.1| GENE 30 27101 - 27841 841 246 aa, chain - ## HITS:1 COG:HP0861 KEGG:ns NR:ns ## COG: HP0861 COG2836 # Protein_GI_number: 15645480 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Helicobacter pylori 26695 # 1 236 4 228 246 98 35.0 1e-20 MEYTSLFSLFVIALIGSFGHCIGMCGGIVLAYSGRLTNNGITNKSTLALYHILYGLGRVT IYVILGAIVGALGSMFNLNATLRGILFLIAGIAMILAGLSLFGKMRFLTKLEHSLQNAKW YQKSFQTALNLRTPQSIYLLGLLNGLLPCGFVYAFLFSAAGSANMVSAMLVMLVFGIATI FPLFFFGVLANTLFYKPNFRKILMNLAAIAIIIFGGLMVQKGVKFLQNPNMGHKMHMSML ILGDFK >gi|197325097|gb|DS990369.1| GENE 31 27867 - 29270 1837 467 aa, chain - ## HITS:1 COG:HP0886 KEGG:ns NR:ns ## COG: HP0886 COG0215 # Protein_GI_number: 15645504 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Helicobacter pylori 26695 # 5 467 3 464 465 536 59.0 1e-152 MQLKIYDSIKKEKVDFFPINPPKVRLYVCGPTVYDDSHLGHARSAIVFDLLRRILRENGY EVLFAKNFTDIDDKIINKSLQSGLSVAEITQTYTQKYLDEMAALGVERADIEPKATESLE SICAMIEKLLEKGFAYQTPNGDIYLSVEKDPQYGSLSGRVAELETQSRIQNSEQKRDARD FALWKSYKGIGDIGYDSPFGKGRPGWHIECSAMIKKHLAYSGEYAIDIHGGGADLLFPHH ENEASQTRCADNQTIAKYWIHNGFVTINGEKMAKSLGNSFFIKDALKNYDGEILRFYLLG THYRAGLNFAEEDLLTAKKRLDRIYRLKKRIYPIQKIDEGECCEFREAFLEALNDDLNVS KALSVVDEFVAKANELLDKKQKDKAPMIAGNLVIIERLLGIGSKNPFAYFQLGVSEEQKN EIETLIAKRNEAKKQKDYAEADKIREELRKMGIEIMDTFEGCVWEKF >gi|197325097|gb|DS990369.1| GENE 32 29463 - 30980 1437 505 aa, chain - ## HITS:1 COG:Cj0017c_1 KEGG:ns NR:ns ## COG: Cj0017c_1 COG1495 # Protein_GI_number: 15791416 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond formation protein DsbB # Organism: Campylobacter jejuni # 1 132 1 132 132 245 86.0 2e-64 MNENTKVKNFYTLMCLAGLLIILLPVGIANVVFGYILGDSPCTLCWGQREAMIFIGVMAL FIVRYGFKGKYVAAILVMAAFGLYQSFAQYGMHAMRDLDQGFGLAVFGLHTYFWAEIVFW AVVLLLGVIFAFAPKFSEFEVEMAGKKVREWTKLSFASVVVVTLIIASNVFQAFVSTGVP PYAGQGDPVRFSLNPKYIIWSTDYWKGKFNGFSFLGPRDVKAPDYAFAPASPKLGVTFDN DSTNAPLNVDETLEIVNEQKIDFPLPINTLSYIRGEYLASSKHDVAVMDDNFQVKSSFKL DPYFSATIDPIIGIIPYMEDKYLLMGSNKSFLRFKQNPNADDAKQYADFIEGADKFEGQG EGLGRGRLVSVRSKFYHVASMATDGKYFYLATTPNNKRAETLIISKFLLSDRKLSGEFIP SANLKEGKTLGDLYITSMVYYNGELYALSKNHNVIVVIDPKAEQVTKTIAYPETIKNARS LLINEKGDIRIQSYQDGSNILYTLQ >gi|197325097|gb|DS990369.1| GENE 33 30993 - 31160 146 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEFLELLMVLIAMILIIKKPEKEKLAFNLVMISWVIMIVLYVWHKAGGILTNMNL >gi|197325097|gb|DS990369.1| GENE 34 31466 - 32287 861 273 aa, chain + ## HITS:1 COG:no KEGG:WS0266 NR:ns ## KEGG: WS0266 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 23 273 21 271 271 364 66.0 2e-99 MKCLKIKLFIFTLFFSITTFASPFGNKLIVPIIELDTDSEHFAYVPAFDLKVGESGEIVR WFDKDHSGIIAMAAVVEINDNRAKIAFEPFVALEQKAFPTPLLKPQKNDEVIFRSFNDRA FLIAPTQDIYDKVKNAYPEVTWLHPDLFAAYLMEVGHTAPVKADFRKICSQYAAGIVYIV NLNEGQALDCQTFSLIKKDYITGRAPIEERMLPFFSRIGSINQEWFFYLINDQRTQDYYL YFDALLKGEIKDSDATFFGRVTNYFTQSLKNIF >gi|197325097|gb|DS990369.1| GENE 35 32300 - 33679 1593 459 aa, chain + ## HITS:1 COG:jhp0459 KEGG:ns NR:ns ## COG: jhp0459 COG0277 # Protein_GI_number: 15611526 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Helicobacter pylori J99 # 1 459 2 459 459 645 67.0 0 MTEQNIRDLKEIVGNEDCYNDKAHLSAYCYDATKDRKYPECVVFPHNEEEVSKILKYCNT HKIPIVPRGAGSGFTGGALPIEGGVVLALEKHMNQILEIDMENMVARVQPGVVNMQLQKA VEAVGLFYPPDPASEHYSTLGGNVSENAGGMRAAKYGITKDFVMALRAVLPNGDIICAGK KTIKDVAGYNIAGILIASEGTLAVITEITLKLLSKPKYKQSAMGIFPSIQTAMNAVYKTM ASGITPVAMEFLDNLSIKAVEEKFHKGLPTDAGAILITEVDGNLPEEIQYQIAKVEEKFY ENGATQFIKATNEQEAADLWFARKNASPSITIYGSKKLNEDITVPRSKLPELLEKIQQVS QKYGVIIPCFGHTGDGNVHTNVMVDGSKAEELEKGHKAIEEIFKITIELGGTLSGEHGIG ISKAPFMKLAFTQEEMNLFRSIKKAFDPNNILNPGKMAL >gi|197325097|gb|DS990369.1| GENE 36 33734 - 34204 626 156 aa, chain + ## HITS:1 COG:jhp1290 KEGG:ns NR:ns ## COG: jhp1290 COG0764 # Protein_GI_number: 15612355 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Helicobacter pylori J99 # 5 149 14 158 159 189 64.0 2e-48 MIYDVQKIREILPHRYPLLLVDRITSITPNQTIEAYKNITINEEVFNGHFPVQPIYPGVY IIEGMAQAGGVLAFMSMFGEDSSNNGDKIVYFMSIDKAKFRNPVTPGDKLTYKLEVIKQK GGIWVLQGYAYVEEKLVAEAELKAMIVDKNKEGTNK >gi|197325097|gb|DS990369.1| GENE 37 34201 - 35004 809 267 aa, chain + ## HITS:1 COG:jhp1289 KEGG:ns NR:ns ## COG: jhp1289 COG1043 # Protein_GI_number: 15612354 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase # Organism: Helicobacter pylori J99 # 7 262 2 257 270 309 58.0 4e-84 MNIAKTAKIAPSAIIEEGAIIGENVEIGHYCIIGKNVKIGDNSKLYNHVTILGNTTLGKS NTIFPNATLGTEPQDLKYHGEPNELIFGDNNKIREFTMINPGTEGGGSKTIIGSNNLLMA YVHVAHDCTIGNHCILANGATLGGHIVMGDYINIGGLTPIHQFVKIGDYAMIAGASALSQ DIPPFCMAEGNRAVIRGLNLHRLRKNFEHYQVDKIHSTYKRLFFGNQPIKEIAQEILDEN PNDENVTKMCHFILNSTRGIPFIRKSL >gi|197325097|gb|DS990369.1| GENE 38 35001 - 36239 1447 412 aa, chain + ## HITS:1 COG:Cj0275 KEGG:ns NR:ns ## COG: Cj0275 COG1219 # Protein_GI_number: 15791646 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease Clp, ATPase subunit # Organism: Campylobacter jejuni # 4 407 13 417 417 515 64.0 1e-146 MNERICDFCKSKETHKNPLITGNNVCICKNCIIASYNLLFGTEKHFEEAEATQEMDLKII PPKELKAILDDYVIGQEKAKKVFSVAVYNHYKRILQNPKEDETEISKSNILLIGPTGSGK TLMAQTLAKALNIPIAICDATSLTEAGYVGEDVENILTRLLQEANGDVTKAQKGIIFIDE IDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQINTKDILF ICGGAFDGLNEIIERRIGGNVLGFHHTKNAKTESKNLLDEVEPDDLVSFGLIPELIGRLH MIATLDEITKEAMITILQKPKNALTKQYQKLFELDDVILTFKPEALEAIAELAIQRKTGA RGLRSIMEEIMLDIMYELPELKGYEVIITQESVTKKEKPILIKQKKSNKKSA >gi|197325097|gb|DS990369.1| GENE 39 36263 - 37297 1585 344 aa, chain + ## HITS:1 COG:Cj0276 KEGG:ns NR:ns ## COG: Cj0276 COG1077 # Protein_GI_number: 15791647 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Campylobacter jejuni # 1 344 1 345 346 494 78.0 1e-140 MLLDRIIGWFSHDISIDLGTANTIVIVKGQGVIINEPSVVAVRNDRYGRNKILAVGHEAK EMVGKTPGSILAVRPMKDGVIADFDMTEKMIRHFIEKAHRRKALMRPRIIVCVPYGLTGV ERKAVRESAMSAGAREVFLIEEPMAAAIGAGLPVKEPKGSLVVDIGGGTTEIGVISLGGL VISKSLRTAGDKLDNAVVEYVRRKYSLLIGERTGEIIKIEIGSAVSLDEPLSMQVKGRDQ VSGLLNTIELTSEDVREAMKEPLKEISNALKDVLEQMPPDLAGDIVENGIVLTGGGALIR GLDKYLSEIVKLPVYVGEEPLLCVAKGTGKALEEIDILQQLSYE >gi|197325097|gb|DS990369.1| GENE 40 37301 - 38116 691 271 aa, chain + ## HITS:1 COG:Cj0277 KEGG:ns NR:ns ## COG: Cj0277 COG1792 # Protein_GI_number: 15791648 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Campylobacter jejuni # 1 246 1 238 249 133 34.0 4e-31 MKKLFLWILFIVIVFFLSIQISKEIHSKFLYLSDSIKIGILNLNQNITNAITRHFNQAQQ IKHLTNELKEKESLQYALESLKYEHNELLNLLQNNDFGSPNFHLVRTISYAHINDHTKIW LKGNDETISQSEKNKIFGLVTNNQVAGIAIFRNNRLMGFLNGDEQCNYSVIVGENKSPGI AKYDINKGFIVDYIPFYPKIKAGDKIQTSGYDGIFYPEIPVGEVQSVEERQGYQIAIIKP FLNKISQFYWIINTNQIKNDQKQSDDSFNFD >gi|197325097|gb|DS990369.1| GENE 41 38274 - 39425 1619 383 aa, chain + ## HITS:1 COG:Cj1267c KEGG:ns NR:ns ## COG: Cj1267c COG1740 # Protein_GI_number: 15792591 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I small subunit # Organism: Campylobacter jejuni # 9 383 5 379 379 598 72.0 1e-171 MEREELLLQKAQKRLKEISKFPALKEGNSIKKMLQEKGVSRRDFLKWAGAMTAMLSLPAS FAPLTAKAAEVADRLPVIWLHLAECTGCSESLLRSDGPGIASLIFDYISLEYHETIMAAS GFQAEHNLESAMQKYKGRYVLMVEGGVPTALEGQYLTIGAHGKTGLETAKEASENAAAIF AIGTCSSFGGIQAANPNPTAAKPLSAVTNKPVINVPGCPPSEKNIVGNVIYFILFGTLPS LDAFNRPKWAYGLRIHDLCERRGHFDAGEFVQSFGDEGAKSGYCLYKVGCKGPYTFNNCS KLRFNSHTSWPIQAGHGCIGCSEPNFWDTMGPFEEPLGNKVYNVPFFSGKDRTADNIGIT LLGVAAIGMAAHAVLSSMKKNKD >gi|197325097|gb|DS990369.1| GENE 42 39443 - 41179 2011 578 aa, chain + ## HITS:1 COG:HP0632 KEGG:ns NR:ns ## COG: HP0632 COG0374 # Protein_GI_number: 15645256 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I large subunit # Organism: Helicobacter pylori 26695 # 1 571 1 573 578 847 67.0 0 MTKRIIVDPITRIEGHLRIEVIVDENNVITDAYSSSTLWRGIEVIVKNRDPRDVGFMVQR ICGVCTYSHYKAGITAVEDALGIQIPFNAQMVRSLMNVSLVLHDHLVHFYHLHGLDWCDI TSALKADPKKASELAFKYVKNPIATGEDELRSVQERVAKFASAKQGLGPFANAYWGHKTY RFSPEQNLIVLSHYLKALEVQRVAAQIMAIFGAKQPHPQSLTVGGVTCVADILDPSRLGD WLTKYKEVADFVNRAYYADVVMAAEVYRNEPSVLKGCGVRNFLSHAEIPVNRNETLYSSG IVRNGDISKLIEINEELITEEATHSWYKNDKALHPYDGDTTPNYTGFVDADTIGPDGTPI KTKALNLDGKYSWIKSPRYNGEPMEVGPLAAIVVGLAAKNPRITKIATQFLKDTGLPVEA LFTTLGRTAARVLECKLSADYGIEAFNSLIENLKTGDQSTCAPYKIDNTKEYKGRYIGNV PRGMLSHWVRIKDGVVSNYQAVVPSTWNAGPKDSKNQMGPYEASLVGIKIQDTTQPLEII RTIHSFDPCIACAVHLMDTKGNEIGQYKIDPIAMNCNI >gi|197325097|gb|DS990369.1| GENE 43 41191 - 41856 734 221 aa, chain + ## HITS:1 COG:HP0633 KEGG:ns NR:ns ## COG: HP0633 COG1969 # Protein_GI_number: 15645257 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I cytochrome b subunit # Organism: Helicobacter pylori 26695 # 10 218 12 224 224 209 50.0 5e-54 METKYKPVFEFSKLTRIFHWIRAITIFALIATGFYLAYPFLSANPNYNVYSLSRIWHVSI GFLLIAVSIFRIYLFICTKECQVERRSFLDFINPIVWFQILRTYLLLGGHPHNKGAYNPL QLVTYIGVMLLIVLISLTGLILYTHVYHEGLGGFLMPIMKPLEVLCGGIANVRLFHHILT WAFIIFIPIHIYMASWNAIKFPGSGIDTIVSGLKFEKDEQS >gi|197325097|gb|DS990369.1| GENE 44 41856 - 42392 654 178 aa, chain + ## HITS:1 COG:HP0634 KEGG:ns NR:ns ## COG: HP0634 COG0680 # Protein_GI_number: 15645258 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase maturation factor # Organism: Helicobacter pylori 26695 # 2 178 4 178 178 201 58.0 6e-52 MKILILGIGNILFGDEGIGVHLSNFLKVNYTFSGEHSLDIVDGGTMAQHLIPIITQYDRV LILDCIDADDAKIGDVYFFDFSAIPNNITWAGSAHEVEMLQTLKMIEMLGDLPPTKILGV KPVIIGSDPTFELSPEILKAAKIMEAQAIKYLQELGIKADKKDQKDLQKIANLSYKGF >gi|197325097|gb|DS990369.1| GENE 45 42394 - 44064 1163 556 aa, chain + ## HITS:1 COG:no KEGG:WS1683 NR:ns ## KEGG: WS1683 # Name: hydE # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 46 543 40 530 546 220 31.0 1e-55 MLLALDFLLIQDLQNAPKIKNFLCKTLTQTAHTFELETQILQTNTSFTLEAKGEEQNLLD FTNALSKNLPLSLQWTFKELRILESLSPTHSLPNPQESSNLLTPLELEKISQKDSSAFCD LWGSFIDFTPQKITFLKDNQKLPLNSKKELQEALQYLSTLLKNQQSIFLKTPLGKKEIIL FDENNPPKIQSPYIFMPFCLNNAQSLFRISAEECQALATLEKPLITLKPKSILKALFPTH EVPCILPFDPILLLLSKFLESHSGFYLLEPTKKLNNGICQFFKTDDTPLEISVGKNSLIL KHHFETTPATATYPELLAFKNTIKSQNLTQTNALYLGNHPTHFMLYFNQSFKTPIEFIFQ SNLTQILEILKVQNTTTKSLLKNFTKSNESLIEQLQSFPTHDRFSSNLLDLLGLCGILLD LHAPFPLTLDFDSNLKAATKAVLQKAGEFVGAKGPRIDFRLEKDKEGKIYLDTLRTLRSV MSFKLAGVESELLCFGILDSMAEFFANLSRDMEENYSTKGIIICGEMFLNKQFLDQFIHY LPKDSEVLGCEIMDFI >gi|197325097|gb|DS990369.1| GENE 46 44234 - 45922 2032 562 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|253826889|ref|ZP_04869774.1| ## NR: gi|253826889|ref|ZP_04869774.1| immunoglobulin A1 protease precursor [Helicobacter canadensis MIT 98-5491] immunoglobulin A1 protease precursor [Helicobacter canadensis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gi|197325097|gb|DS990369.1| GENE 47 47304 - 48017 1136 237 aa, chain + ## HITS:1 COG:Cj1172c KEGG:ns NR:ns ## COG: Cj1172c COG0217 # Protein_GI_number: 15792496 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Campylobacter jejuni # 1 236 1 234 235 255 67.0 6e-68 MGRAFEYRRASKEKRWDKMSKLFPKLGKAISIAVKEGGSGDPDMNSKLRTAIMAAKAQNM PKDNIEAAIKRALGKDGIQITEVNYEIKAPHGALFFVECATDNTTRTVANLKSYVNKLGG QMLTNNSLEFMFSRKAHFEVNKEGLGDLEELELNLIDAGLESLEVEEDIVHIYGDYTSFG SLANALETIKADVKKAALERIANNPVEFSEEELADIEKLLDRIEDDDDVQAVFTNIA >gi|197325097|gb|DS990369.1| GENE 48 48112 - 48432 501 106 aa, chain + ## HITS:1 COG:jhp1351 KEGG:ns NR:ns ## COG: jhp1351 COG0526 # Protein_GI_number: 15612416 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Helicobacter pylori J99 # 1 101 1 101 104 108 54.0 3e-24 MMNQLTKESFANETKEGVCLVAVGAPWCPDCKKIEPIMGMLMQEYVGKVKFCMVMADEQE ALKDELNVRRIPTLIFFKNGVEVGERLVEPNSKPMIEDALKKAIEA >gi|197325097|gb|DS990369.1| GENE 49 48540 - 49973 1535 477 aa, chain + ## HITS:1 COG:Cj0131 KEGG:ns NR:ns ## COG: Cj0131 COG0739 # Protein_GI_number: 15791519 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Campylobacter jejuni # 35 474 31 453 457 291 38.0 2e-78 MQNPHSKGGFIKILGLILIIVFVGAGIFMLTSESFEKESPQISLRDTPAWNLKDFFPIQI QDNAGISKYSVTLLQNQEKIPLQTKILTSQNCLSPDAELSESQEIPTNPKILCIGIQKPN NIKNSTPELELEISATDTSHWNLFNGNTTTKTLKIPIDTKKPQLTILSHSYKITQGGSAL VIFRATDDNLKNIRISNGTYDFYPQPFYKEGFYISLIAWNKTNPNFSAKIYASDLAGNIS IMPINFYLQKKQYRDSTIPLKDSFIDGKISTLVQEIGEKNLEDFPNKLAIFKYINEDVRK QSANRVFEVASQFDRETLVKDFPIHAFSPLKNGAVMANFGDHRTFSYQGENVSESNHMGL DLASIKQAPVSLGNPGVVTLSEFVGINGNTIIVYHGLGLSTLYAHLTTQKVSVGDSLNTG DIIANTGNTGLALGDHLHFSVLVQGHEVWTTEWLDSAWIKTNIDEVINEAKLIMDRL >gi|197325097|gb|DS990369.1| GENE 50 49982 - 50575 597 197 aa, chain + ## HITS:1 COG:HP1053 KEGG:ns NR:ns ## COG: HP1053 COG0850 # Protein_GI_number: 15645667 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation inhibitor # Organism: Helicobacter pylori 26695 # 1 192 23 211 217 80 27.0 1e-15 MVEARQRSLRSFIFVTGQEEETIAYIQKHFILIKDFLLVFAYPITNKLLEFLQSQDLTFI EQKNSQKILSKLPETQKSQETSIKTESTQILPKDNQPTNQTLILHRTIRSGEEIITKGDI TIFGRVNSGAMIHAQGNVQIFGEISGNVFCNGNYMILGPIKEGNILFDGEIIEKDKLLQN YQKIYKKNNEIIIEDLL >gi|197325097|gb|DS990369.1| GENE 51 50572 - 51459 1106 295 aa, chain + ## HITS:1 COG:jhp0373 KEGG:ns NR:ns ## COG: jhp0373 COG0774 # Protein_GI_number: 15611441 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-3-O-acyl-N-acetylglucosamine deacetylase # Organism: Helicobacter pylori J99 # 1 290 1 290 295 376 61.0 1e-104 MRQQTLTKPIELVGIGLHKGVPVKMRLEPLEENSGIHFFRSDVGVNIPLKPDNVVDTTMA TVIAKEGHKVSTIEHLLSAVHAYGIDNLRIVLDNEEVPIMDGSSIGYCMLLEEAGITQQN APKKILKIKSPIEVKEGDKFVRLEPSKECIFDFSIHFPHPVIGTQNYKFTFSTHNYKEEI ARARTFGFLSEVQYLRSKGLALGGSLDNAIVLDETTILNKDGLRYKEEFVRHKILDAIGD MCLLGIPLLGTYVSYAGSHKLNHLLTKKIFEENSAYEIIQSFQENDDYALAYQNA >gi|197325097|gb|DS990369.1| GENE 52 51461 - 51916 524 151 aa, chain + ## HITS:1 COG:jhp0374 KEGG:ns NR:ns ## COG: jhp0374 COG1214 # Protein_GI_number: 15611442 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Inactive homolog of metal-dependent proteases, putative molecular chaperone # Organism: Helicobacter pylori J99 # 6 151 7 165 165 81 35.0 5e-16 MYQIFIIPTSQPILIGIYKDYELESSHSLPSQLSESLIPFFVKLKAQGIAANNLYFVRGP GSFMALKLIYLFAKTMQITHNSNLFATHGFYFNSNSPIKAYGNSYFVLENNEITLKTYPT PPKIAPYTLPQRLNKSLFTETINPLYLLPPV >gi|197325097|gb|DS990369.1| GENE 53 51918 - 52781 969 287 aa, chain + ## HITS:1 COG:Cj0948c KEGG:ns NR:ns ## COG: Cj0948c COG0053 # Protein_GI_number: 15792277 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Campylobacter jejuni # 1 284 1 287 295 247 48.0 2e-65 MTIQKKATLISSLVASLLICVKFIIGILSGSVAILASAIDSLLDLCISLFNLYAITKSEQ PANSSFNYGKGKIESLAAVIEGSIISASGAFILYESFKKLLFGSELNYLTYSVWVMVFSI VVTTSLVLYLNFVAKKSNNLVIKADALHYKTDILSNMAVLIALVLVYFTGFNELDALFGI GIGIYIIYSAWTLLKSGVLILLDRALDANIIQSIEKILNEAPINSYHDLKTRQSGEIYFL EVHLVFNPEISLLEAHAIADSIENKIKALEGNWIVITHLDPNDDEGH >gi|197325097|gb|DS990369.1| GENE 54 52781 - 54511 1930 576 aa, chain + ## HITS:1 COG:Cj0377 KEGG:ns NR:ns ## COG: Cj0377 COG0464 # Protein_GI_number: 15791744 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATPases of the AAA+ class # Organism: Campylobacter jejuni # 1 574 1 570 570 454 49.0 1e-127 MQYLLDFLQTTPITKTKIYPFLRCSEEEALILHYFCREILKGNEEILCLDTINALFMPTN DETILKFLPLFKNLLDLGWLSQNLFLKNLNNEVLYLKLLNSPFSLSNNFLKLIQEGGIYP KLPKISAYSDHLDYLKDQFLVIDILSSLLPYKKDNLSSPFLAKGEQKIKALQDRIKQRLN LTKEKPSLEKLFEEYSLNAQEKIIFLALLKEEYSGRESQARELNTLINLVSLNDYERIKN RALLDDRSKLVQKGLVDYDEILSTFEGINRTFFIPDEILKKITHPNNEEKKQKISLQTLI DNQDIFEFIQPKTSLNNVVLNPRTKETLETLLKQMDSKVLQNLKNWGIKDKKRGIDAKII FYGAAGTGKTMTALALAKSLKKSILSFDCSKILSMYVGESEKNVRKIFDTYKELCKESKE SPILLLDEADQFLSMRSTSASGADKMHNQMQNIFLEQIEKFDGILIATTNLLETIDTAFS RRFNYKIEFKKPNLEERLLLWEKLLPKNAPYEKAFNLQSLAEFSLTGGQISLVIKNAAFL VAAQKSPLFTTQIFIEEIKRELNSNFDGQREMGFHT >gi|197325097|gb|DS990369.1| GENE 55 54570 - 55910 1349 446 aa, chain + ## HITS:1 COG:jhp0450 KEGG:ns NR:ns ## COG: jhp0450 COG0733 # Protein_GI_number: 15611517 # Func_class: R General function prediction only # Function: Na+-dependent transporters of the SNF family # Organism: Helicobacter pylori J99 # 1 438 1 438 442 336 46.0 7e-92 MNRFSKIGFILATAGSAIGLGGIWKFPYMAGQNGGGAFVLMFIVTFLVFGLSVFIVEMIL GRASERDCFSTFETLAPKGHKYLKYGGIMVFTGLVIFSFYAVVLGWLMHYMVLSLIGLPK TLEATQNFWGNFISNQVGYQLLWHFVIIALCAYVLNQGIKKGIEKLNLILMPLLLIIFIG LLVYAICQDSFWASFSFLFAPDFSKLTPKVIVDAIGQAFFALSLGVGVILTYSNSLPKKG NFIRSALIIALLNFVFCIVAGLVIFTFIFGYGATPDSGPGLVFISLPLIFANMGLSGQII AFLFFIALIFAGITSAVSMLEPLNTYLIDRFSFSRTKANLTTIGITYFLGVILLFSNIAI YQEDLSFFGKNLFGWFDYISASYMLPLAGVFLCIFVGWILPKSQVYAMCEGNLTGKIFQI WYFIIRYIAPIGIIVSMITLAIEGLK >gi|197325097|gb|DS990369.1| GENE 56 55912 - 56238 459 108 aa, chain - ## HITS:1 COG:no KEGG:WS0805 NR:ns ## KEGG: WS0805 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 6 106 9 110 110 82 44.0 4e-15 MKIFLILLMAYSLKAQPWVMFNDLDDTYLYDQASGQVYIRVKKGGKNYEDTFVKMGIIDK NPSKNSTHSQTKEIDMQKENDSKKDQQELLKKAQELQRSIQNGIFEAE >gi|197325097|gb|DS990369.1| GENE 57 56283 - 56498 324 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418570|ref|ZP_03656576.1| ## NR: gi|224418570|ref|ZP_03656576.1| hypothetical protein HcanM9_04757 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0223 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0223 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 71 1 71 71 120 100.0 4e-26 MLRGYLIFFTTASAFESEMLLKTTKIHFKLVPTPREFSSDCGIAIYFEVESTAILQEKLD VSKIEYEIKLL >gi|197325097|gb|DS990369.1| GENE 58 56510 - 57709 1316 399 aa, chain - ## HITS:1 COG:CAC2354 KEGG:ns NR:ns ## COG: CAC2354 COG0520 # Protein_GI_number: 15895621 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Clostridium acetobutylicum # 15 398 2 376 379 254 37.0 3e-67 MNYTKSLDEGVNHRIYLDNAATSFPKAPGVKEAVCAFMEDIGASPGRSAHTLSIQSGRIL YQSRRLLADLLGLKDCKRVFFTHNTTMAINVVLQGFLRPNSVVVTTQMEHNALMRPLNAL KERLNLEIRQIPCTPFCELDLEAARELLKGADLLACAHINNVSGIMIPIRELSALARSEG VAFLLDGAQSVGCVEMFDVMEQVDFLALSAHKGLLSPMGVGALLVNDSFEMQRLEPLVFG GTGSASEEEIQPLFLPDRFESGTPNMHGIAGMYAGIEWINAKGVAEIHAHELNLRNHLIE GLKNIKGVKLYGVSESLGKLGANATLSLSIEGKSVSEVGLRFDREFGICVRIGLHCNPAT HKILGSFEQGGSVRVSAGVFNTHSEIESCLEALGKIAKS >gi|197325097|gb|DS990369.1| GENE 59 57684 - 57902 355 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418572|ref|ZP_03656578.1| ## NR: gi|224418572|ref|ZP_03656578.1| hypothetical protein HcanM9_04767 [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 72 1 72 72 137 100.0 2e-31 MKELDVRGLSCPEPVLNLKPLCEQGEEFIKVLCSCGAASDNIQRMASHYGYEVKKISEDQ GEIVYELHKKLG >gi|197325097|gb|DS990369.1| GENE 60 57904 - 58962 427 352 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167854911|ref|ZP_02477687.1| ribosomal protein L11 methyltransferase [Haemophilus parasuis 29755] # 202 349 1 148 151 169 54 2e-40 MRLAIWPILAGIALGVIAPLLVSLGNPGNMGVCAACFTRDIAGGLNLHQASIVQYIRPEI IGLVIGALVASFVFGEFRPRAGSAPVVRFMLGVFAMIGALVFLGCPWRMWLRFSAGDFTA IAGIFGLVCGILIGIFFLKRGFSLGRSYATSKIVGFIFPLFVIGLFGLLIWGMLDAEAPV KFSQKGPGSQHAPLVISLIAGLFLGAIFQKSRFCMIAAVRDSVLLKDTHILQGVIALVVA AFLTNLALGYFNPGFSGQPIAHNDWVWNFLGMLLSGFAFSLAGGCPGRQLVLSGEGDSDA GVFVFGLLMGAAFAHNFGLASSANGIGVNAPVAVFVGIAFCLLVAIFAKERR >gi|197325097|gb|DS990369.1| GENE 61 59434 - 60933 1848 499 aa, chain - ## HITS:1 COG:HP1195 KEGG:ns NR:ns ## COG: HP1195 COG0480 # Protein_GI_number: 15645809 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Helicobacter pylori 26695 # 7 499 201 692 692 852 87.0 0 MILKKGPADLVEKANEYREKMVEFAAEQDEALMEKYLGGEELSVEEIKAAIKKGCLAMEI IPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVADIRGVDAKDEEKEVSVKSTDDGEFAGLA FKIMTDPFVGQLTFVRVYRGSLESGSYVLNSTKGKKERVGRLLKMHSNKREDIKEVYAGE ICAFVGLKETLTGDTLCSEKEPVILERMEFPDPVISIAVEPKTKADQEKMALALAKLAEE DPSFRVHTDEESGQTIISGMGELHLEIIVDRLKREFKVEAEVGQPQVAFRETIRQSVEQE CKYAKQSGGRGQYGHVFIRLEPQEPGKGYEFVNNISGGVIPKEYIPAVDKGIQEAMQNGV LAGYPVVDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKDACRKAGAVLLEPMMKVEVEVPE EYMGDVIGDLNRRRGQINSMDDRMGLKIVNAFVPLAEMFGYSTDLRSATQGRGTYTMEFD HYGEVPSNISKEIMEKRNG >gi|197325097|gb|DS990369.1| GENE 62 60890 - 61516 576 208 aa, chain - ## HITS:1 COG:HP1195 KEGG:ns NR:ns ## COG: HP1195 COG0480 # Protein_GI_number: 15645809 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Helicobacter pylori 26695 # 1 199 1 199 692 396 93.0 1e-110 MARKTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERG ITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVAVFCSVGGVQPQSETVW RQANKYGVPRIVFVNKMDRIGANFYNVESQIATRLKARPVPLVIPIGAEDTFKGVVDLIQ MKAIVWNDESMGAKYDIEERACRFSRES >gi|197325097|gb|DS990369.1| GENE 63 61596 - 62063 786 155 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|224418576|ref|ZP_03656582.1| 30S ribosomal protein S7 [Helicobacter canadensis MIT 98-5491] # 1 155 1 155 155 307 100 4e-82 MRRRKAPQREVLGDPIYNNIVVTKFINKMMYDGKKSVAEKIIYATFDKIEEKTKEKGIET FEKALEKVKPLVEVRSRRVGGATYQVPVEVRPARQQSLSIRWLLDSARKRNERTMIERLA NELIDAANERGAAFKKKEDVHKMAEANKAFAHYRW >gi|197325097|gb|DS990369.1| GENE 64 62076 - 62465 650 129 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|224418577|ref|ZP_03656583.1| 30S ribosomal protein S12 [Helicobacter canadensis MIT 98-5491] # 1 129 1 129 129 254 99 2e-66 MPTINQLIRKERKKVIKKSKSPALVVCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTSG FEVISYIPGEGHNLQEHSIVLIRGGRVKDLPGVKYHIIRGALDTAGVAKRTVSRSKYGAK KAKSGDSKK >gi|197325097|gb|DS990369.1| GENE 65 62565 - 71210 10533 2881 aa, chain - ## HITS:1 COG:HP1198_2 KEGG:ns NR:ns ## COG: HP1198_2 COG0086 # Protein_GI_number: 15645812 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Helicobacter pylori 26695 # 1375 2879 2 1507 1515 2279 75.0 0 MPVNLKSGNRLRVDFTKIPQNIAVPNLLQLQRSSYEAFLQSKENNESGIEKVFKSIFPIH DTQNRISLEYAGCEYGKPRYTVREAMERGLTYSIPLKIKIRLVLWERDEKTGEKLGIKDI KEQNIFVREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTTSNKLVYTGQIIP DRGSWLYFEYDAKDTLFVRVNKRRKIPVTILFRALGYSKQDILKMFYPSLSVKAKSGKYF IAFDPEEFIGRVDFDIKDSKGKLILAAGKRLTAKKAKALKEEKINMIEYPVETLVNRYLA EPIIDKESGEVIFDTLTLMDDSKLKKLAEMGINEFVIANDLANGVDSSIINAFIADAESL KLLKQTEKIDNENDLATIRIYKVMRPGEPVTKEAAKQFVQQLFFDPERYDLTRVGRMKMN HKLDISVPDYVTILTHEDIIKTVRYLIHVKNGQGRIDDRDHLGNRRIRAIGELLANELHT GLVKMQKAIRDKLSTISSGLEELMPHDLVNSKMITSTILEFFTGGQLSQFMDQTNPLSEV THKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLSTYAKVNDL GFIEAPYRKVVDKKVTDEIVYLTATQEEGAVIAPASTILTNDNMIKEDIIEVRKDGEIIL MESSKVELIDLSPRMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLCPDAPVVGTGI EKIVSRDSWESLKATRGGIVEKVDAKNIYILGEDENGAFIDHYSLQKNLRTNQNTSFSQK PIVKAGDVIESGDVIADGPNMDQGELALGKNIRVAFMPWNGYNFEDAIVVSEKLIRNDAF TSIHIYEKEIEARELKHGVEEITRDIPNIREEELAHLDESGIVKIGTYVTGGMILVGKAS PKGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSLEGTVIDVKIFTKKGYDKDRRAVIA YEEEKARLDLEHHDKLLMLDREESLRIGSILAKEKLIANVKVGDKEYKKGSVIPKEELEN VNRFVMGTIIKGYSKEIQSQYDLLKANFLEQKKSLSEEHEEKLSIIEKDDILPSGVVKLV KIYVATKRKLKVGDKMAGRHGNKGIVSNIVPEVDMPYTKDGRPVEIVLNPLGVPSRMNIG QILEVHLGLVGKKLGEQIAFVFEQEKSQWISQLREKMQEIAEVSGMKETKEFLASLNDEA LLAYARDWSKGVKFATPVFEGVNAQEFEKLFNLAKIDTDGKTELYDGRTGEKMMERVNVG YMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK EMLTIKSDDVEGRVKAYKAITRGEAVKESEIPETFYVLTKELQSLALDVNVFADNQEGMS EPIVIKEDNRPSDFNAFQLLLASPEKIRSWSYGEVKKPETINYRTLKPERDGLFCAKIFG PVRDYECLCGKYKKMRYKGIVCEKCGVEVTSSKVRRSRMGHIELVTPVAHIWYVNSLPSR IGTLLGVKMKDLERVLYYEAYIVKQPGEAYYDNEGTKPVAKYDVLNEEQFQNLSQRFEHT GFVAQMGGEAVKELLEGIDLVDLIAELKEAIKTTNSEAKKKTIIKRLKVVESFVVSGGQN RPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNQRLKRLIELDAPEIIV RNEKRMLQEAVDALFDNGRNANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGR SVIVVGPNLRMDQCGLPKNMALELFKPHILAKLEEKGYATTLKQAKKMIERKSNEVWECL QEIVQDYPVMLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCAAFNADFDGDQMAVHVPL SQEAITECKLLMLSSMNILLPASGKAVTVPSQDMVLGLYYLSLEKDGSKGEHKLFSNIDQ IHIALESGVVEISSKVRVFVEDRIINTTIGRMILKSILPDFVPMHLWNKILKKKDIAALI DYVYKEGGVGVTASFLDNLKNLGFKYATRAGISISADDIIVPNNKNKVIEGAKKKVKDIQ AQFGAGLLTEQERYNKIIDVWTDTNNALGNEMMKLIESDKSGFNSIYMMADSGARGSAGQ IRQLSAMRGLMAKPDGTIIETPITSNFKEGLNVLEYFISTHGARKGLADTALKTANAGYL TRKLIDVSQNVKIVMDDCGTNEGVEITDITVGSELIESLDERIFGRVIAENIIDPITNEV LISEGTLIDEEKARKVKEAGVKSVIIRTPVTCKAEKGVCAKCYGLNLGESRISKMGEAVG VVAAQSIGEPGTQLTLRTFHIGGTASRSQEERQVVADKEGFIRYYNVKTYKNREGKRIIS NRRNAAILLVEPKIKAPFEGELKVDIVHDEVIISVVGKEETAKFTLRKSDVAKPNELAGV TGKIEGKFYIPYPSGHYVRDEGSIVDIIKDSWNIPNRIAYASELKVEDNAPITQKIYAKE EGIVKYYYLQGDHLERYRALKKGEKITEKGVFAVIADEYDQEAARHYIARDSIIEIEDNQ KVGKNTLIASPESDEQVVIADWDPYSNPIISEEAGTIKFEDIIPGLTVSEQTDELTGQTR LVVNEYISSAYKPTLVLSTAKGGLIRYSLDPKTAIFVADGAKVEMADVLAKTPKALVKSK DITGGLPRVSELFEARKPKDPAVLAEIDGIVSFGKPVRGKERIVITANDGRMVEYLIDKS KQILVHEGEFVHAGEAITDGVIASQDILRIGGEKELYKYIVSEVQQVYRRQGVSIADKHI EIIVSQMLRQVRIYDSGNTKFIEGDLVSKRHFREENARIIKMGGIPAIAEPVLLGITRAA IGSDSVISAASFQETTKVLTEASIAAKIDYLEDLKENIVLGRMIPVGTGIYKGKKVRIKE N >gi|197325097|gb|DS990369.1| GENE 66 71289 - 71663 597 124 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|224418579|ref|ZP_03656585.1| 50S ribosomal protein L7/L12 [Helicobacter canadensis MIT 98-5491] # 1 124 1 124 124 234 100 3e-60 MAISKEDVLEYIGNLSVMELSELVKAFEEKFGVSAAPTVVAGAVAGGAGAAAEEKTEFDV ILADSGDKKINVIKVVREVTGLGLKEAKDAVEKTPFTVKEGVKKEDAEAMKAKFEEAGAK VEIK >gi|197325097|gb|DS990369.1| GENE 67 71688 - 72170 786 160 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|224418580|ref|ZP_03656586.1| 50S ribosomal protein L10 [Helicobacter canadensis MIT 98-5491] # 1 160 1 160 160 307 100 4e-82 MTKVEKNALIESLSAEFQASKAIVVCDYKGLTVKELETLRAEMRAQSAKVQVVKNTLASI ALKNSNIEGLELKENNIFLWSEDQISLSKVVCKFSNSVGGKLVIKSGYFEGELVDSKHIE AVSKLPSKEELIGMLLSVWTAPARYFVTGLDNLRKQKESE >gi|197325097|gb|DS990369.1| GENE 68 72261 - 72965 1157 234 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|224418581|ref|ZP_03656587.1| 50S ribosomal protein L1 [Helicobacter canadensis MIT 98-5491] # 1 234 1 234 234 450 100 1e-125 MAKKITKRMQKLLEKVDCKKIYDITTASATVKSLASAKFDETVEIALSLGVDPRHADQMI RGAVVLPNGTGKNVRVAVFAKGVKADEAKAAGADVVGDEDLAEQIKGGEINFDMVIATPD MMALVGKVGRILGPKGLMPNPKTGTVTMEVSKAVSNAKSGQVNYRVDKKGIIHAPVGKVS FDAKKLEENIIALVRNINKQKPATAKGKYIKNATLSLTMSPSLKLDAQELIDMK >gi|197325097|gb|DS990369.1| GENE 69 72989 - 73414 710 141 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|224418582|ref|ZP_03656588.1| 50S ribosomal protein L11 [Helicobacter canadensis MIT 98-5491] # 1 141 1 141 141 278 100 3e-73 MAKKIIGELKLQIPAGKANPSPPVGPALGQRGVNIMEFCKAFNEKTKDMGDFNIPVLITV YQDKSFTFVTKKPPVTDLIKKAAGIQKGSDNPLKNKVGKLTKAQVLEIVKTKMDDLNANS EEAAIKIVEGSARSMGIEVVD >gi|197325097|gb|DS990369.1| GENE 70 73437 - 73967 738 176 aa, chain - ## HITS:1 COG:jhp1126 KEGG:ns NR:ns ## COG: jhp1126 COG0250 # Protein_GI_number: 15612191 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Helicobacter pylori J99 # 5 176 4 176 176 268 79.0 3e-72 MALYWYAIQTYFGSEQAVKRGIENLVREHHLEERITDIVVPTEDIIEVKNNKKKISERSL YPGYVFIKVDLDTALWHKIQSLPKVSRFIGEAKKPTPLSEADINHIIEKVQNRAAPKPKV IFETGEVVRIIEGPFANFTGTVEEYDMEHRKLKLNVSIFGRSTPIEILYSQVEKIV >gi|197325097|gb|DS990369.1| GENE 71 73984 - 74163 70 59 aa, chain - ## HITS:1 COG:HP1203a KEGG:ns NR:ns ## COG: HP1203a COG0690 # Protein_GI_number: 15646210 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecE # Organism: Helicobacter pylori 26695 # 1 59 1 59 59 61 67.0 5e-10 MKKLISYYRLSREELSKVIFPTKEQVRNAFISVVIVVTIIALFLALVDFILGSFVSSIL >gi|197325097|gb|DS990369.1| GENE 72 74299 - 74469 295 56 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|224418585|ref|ZP_03656591.1| 50S ribosomal protein L33 [Helicobacter canadensis MIT 98-5491] # 1 56 1 56 56 118 100 3e-25 MAKGNRVKIGLKCSECGDINYSTVKNAKTQTEKLELKKFCPRLNKHTIHKEVKLKS >gi|197325097|gb|DS990369.1| GENE 73 74480 - 75679 1504 399 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 399 1 407 407 583 70 1e-165 MAKEKYVKSKPHVNIGTIGHVDHGKTTLSAAISAVLSTKGLAEMKDYDNIDNAPEEKERG ITIATSHIEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI LLSRQVGVPYIVVFMNKQDMVDDPELLELVEMEIRELLSSYEFPGDDTPIIAGSALKALE EAKSGNLGEWSEKIMKLMDAVDEYIPTPVRETDKTFLMPIEDVFSIAGRGTVVTGRIERG VVKVGDEIEIVGIRPTQKTTVTGVEMFRKELDQGEAGDNVGVLLRGTKKEEVERGMVLCK PGSITPHKKFEGEIYVLSKEEGGRHTPFFNGYRPQFYVRTTDITGSIALPEGVEMVMPGD NIKITVELINPIALEEGTRFAIREGGRTVGAGVVTKIIE >gi|197325097|gb|DS990369.1| GENE 74 76411 - 78366 2667 651 aa, chain + ## HITS:1 COG:FN1971 KEGG:ns NR:ns ## COG: FN1971 COG1629 # Protein_GI_number: 19705267 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Fusobacterium nucleatum # 14 651 2 657 657 117 24.0 1e-25 MQKHKNLQPKGFRKKYFSLAAILALNSTLLAQSQNIALNEKSSQSQDSQSLKLSIIHANE FVENADFKEEFSAEEISQSNAQNVYEFLNLHSLLKTTSSYGNPYTQNIDLRGFGQNAHKN LAIIVDGVRINNIDSAPVSLSSIPLDSIQKIEIIRGKGMTKYGNGAVSGILKITTTRKEG GTINLGYSSYDTLNSQMTARYVGDTLNIGFYGQYQHSQGARKITQGSDEKDGNYNKNSGI SLFYYPNDSLILKASANYSKYGIKYADPLTKEQFDKDPSQAGDSFSHQKRWDLYHNIGLT YFAQNGVTTDINFGGNRNESNYVNSPNALYVGKGLYGNFNTAYKNDSYLAEIGGEIKQNQ RTNNNVKAEVSEMLLYLSGEKYLGNSTLNLGINTQRVINKQTNSYSRDENLIGGELGYHY QIHPQISVFTSYSRTFVTPNVDWLLRIFAPLPNTLIEPATFDTFQIGTDMIVGIHKLSGS VFYIQGHDENYFGLNKITGIYDNQTLGKTRRIGGEVKLTTYFLQNLYSTLSYAYVDAAMQ SDEGYKGNTIPGVSKHTFVTSLNYLPIPNLNLGISYKYGSRAYDYNDYDNVLTKMPNYQS LNATLSYTLKDFEIYAFANNLTNHKNALVVSEAYYPYEFETTFGGGVKYKF >gi|197325097|gb|DS990369.1| GENE 75 78366 - 78941 493 191 aa, chain + ## HITS:1 COG:no KEGG:WS1231 NR:ns ## KEGG: WS1231 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 6 186 7 187 191 134 51.0 2e-30 MQNFSLRNYLIYKFLNSLFGGVALGTIFTIYALLPPKTFSIGGIILALGAWILSFFYTQL LQTKPYKIILIFIEILPFGYLLSYLLFPQTFYGALLVYGLYQIGFIFGDYLVRNETLIFH SKSFLSKIDKTRQIGYLGGLVLSFIFYFGLEQFGILLKELQVYYIHFLLLLLQCLVFITL IFSFKGTPCKT >gi|197325097|gb|DS990369.1| GENE 76 78884 - 79609 564 241 aa, chain + ## HITS:1 COG:Cj1208 KEGG:ns NR:ns ## COG: Cj1208 COG0212 # Protein_GI_number: 15792532 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Campylobacter jejuni # 31 231 9 200 208 104 37.0 2e-22 MLSVYYSYLFIQRNSLQNLKESYRQRYKANLKKIQDSKHSRFLDYRLEKRLDKLLKSLIY AHKKTSKAPISILFYYPLKSEFDCRKLLNSYRKSRNIQIFIPFMCGISFKIVKYRLPLQK KAFGIYEAKNSAFYFKKINIAIIPTLGMDKNFKRIGFGKGMYDRFFDTLKHKPTNIFICR GIHYTHQTITEKHDVQSNFFITPFASLKLEDQKYDNLDYCQFRFISLSRWRRKLPYFTQT F >gi|197325097|gb|DS990369.1| GENE 77 79524 - 81095 2431 523 aa, chain + ## HITS:1 COG:Cj1209 KEGG:ns NR:ns ## COG: Cj1209 COG1418 # Protein_GI_number: 15792533 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Campylobacter jejuni # 11 523 9 517 517 509 58.0 1e-144 MITWIIVSSALSALVAGGGSYLISRRLSRANVEILLEQSKAKAKAIEYEAEKALQESKIK AKEIELESKQKYERETAKIVKEYENNLLEFEKVKLRENQKLEHKQCALDHERQLINRDKN ILLQEQESLKKLKANYQEKLKELTQELATISTITKSEAKKLLFEKMQEESSQEIAQILRK QEKELREEAKAKAAYILAQAASRFAGEFAAERLIHTIILPNDEMKARIIGKDGRNIKALE MICGVDIIIDDTPGVIVVSSHNLYRRSIAVQTIQRLIEDGRIQPARIEEIYQKCFEEFEQ NIFDEGDKVTLDLGLGNIHPEIKKLIGKLRYRASYGQNALAHSLEVANLAGIIAAELGGD CLLATRAGLLHDIGKARTHEFKGTHVELGAEIIRRYNEHPVVLNAILSHHGDEEAKSIEA AAVCAADALSAARPGARREVLENYLRRVSEIEKIALSKMGVLHAYAINAGREVRVIVKAE EIDDDESYLLAKEIAQEIQSNVQYPGEIKVSVIRETRACAIAE >gi|197325097|gb|DS990369.1| GENE 78 81114 - 82199 903 361 aa, chain - ## HITS:1 COG:alr3012 KEGG:ns NR:ns ## COG: alr3012 COG0399 # Protein_GI_number: 17230504 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 2 350 8 369 382 265 39.0 1e-70 MIKFLDLHKINQRFKSEIDLAIREVLESGWYLLGEKNKAFEENFAKYCETKFSVGCANGL DALHLAIRAYDFPKDSEIIVPANTYIASILAISNCGLKPILVEPNLETYNIDADLIEAKI TEKTKAIVVVHLYGQAVEMEKIWELAKKYNLKIIEDCAQAHGAIYQGKKVGNLGDIGCFS FYPGKNLGALGDGGCITTNDEEMATKIRAIANYGSLIKYENIYKGLNSRLDEIQAAILDL KLQFLDADNQQRREIAKIYRENIKNEKIILPKPYEEESHVWHLFVIRTKDRDKLQEYLKI KGIQTLIHYPIPPHKQNAYKEWNNLSFPITEKIHKEVLSLPISPVMNKEEAFYIAQILNE F >gi|197325097|gb|DS990369.1| GENE 79 82203 - 83000 478 265 aa, chain - ## HITS:1 COG:no KEGG:C8J_1082 NR:ns ## KEGG: C8J_1082 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_81116 # Pathway: not_defined # 1 230 92 319 354 204 46.0 3e-51 MLERDALEKIYQAFEETHVDVVYPGVKVIDENNMISQSKKIEMRYKEPLEILNYMFFEGN CLMSVGMSIKRQAFRDIYPLPLGLCNHQDTFMHINLLLNGAKILFLQDEVILYRMAGDQT SISARKNVTLTRENLEIESLMDSFLRVKDIELLKKIFKNEIQNTGIMPYEDTIEFFLGRM AMYSSQRVRKYWGYHKILEFYNKSNNSNILKTRYNFNFKDLLGLAELCDSDMMIKKYRKY RKLFKGSLVFCGILIMVIVGIILWR >gi|197325097|gb|DS990369.1| GENE 80 83049 - 83288 296 79 aa, chain - ## HITS:1 COG:RC0623 KEGG:ns NR:ns ## COG: RC0623 COG0463 # Protein_GI_number: 15892546 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Rickettsia conorii # 3 77 6 82 281 68 45.0 2e-12 MNPKISILTPSFNHEKYIGFFLQSVLGQTFQNFELIIVDDCSWDKNLEEIKKFKDERIKL IRHDYNKGINAALNTAFAS >gi|197325097|gb|DS990369.1| GENE 81 83297 - 84280 456 327 aa, chain - ## HITS:1 COG:BH3657_1 KEGG:ns NR:ns ## COG: BH3657_1 COG0463 # Protein_GI_number: 15616219 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus halodurans # 3 93 112 202 373 86 40.0 8e-17 MLKISILMPCYNSEEFLQRSINSVLQQEYENWELICVDDCSKDDTYKKLQEYVSKDTRIK AIKREINGGCAASLNVSLEQCSGDFIFVLGHDDEISRDCLQGCVDRYYEVGEELDAIIPD CYFVYPDNTSGKSIIGISNDLKSKNRILSGIEAFEFSIFWNIAGFALFRADIVKQHKFLE DCMNGDEYAVRIFFLNSKKVAFSKKGKYLYHQVPTSVTKKMSPKKFDIFLVFLKLEEVAK RNQLKKSLIKKINRERYQQIHNLWQEYLENKNIFTNEEQKSIEAKFDKYEELLKPYKAFW IDSILRRERGRGYKAWILFDVFKIYYN >gi|197325097|gb|DS990369.1| GENE 82 84294 - 84650 94 118 aa, chain - ## HITS:1 COG:PAB0773 KEGG:ns NR:ns ## COG: PAB0773 COG0110 # Protein_GI_number: 14521366 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Pyrococcus abyssi # 4 108 37 141 205 120 57.0 9e-28 MFKAIIDENYNICSHCFIENDVKIGNNVTIKCGVQIWDGIEIEDDVFIGPNVTFCNDKYP RSKQYPKEFSKTIIKKGASIGANATILLGITIGENAMIGAGAIVTKDVLSHVTYYSKI >gi|197325097|gb|DS990369.1| GENE 83 84666 - 85484 339 272 aa, chain - ## HITS:1 COG:YPO2420_1 KEGG:ns NR:ns ## COG: YPO2420_1 COG0223 # Protein_GI_number: 16122640 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Yersinia pestis # 62 216 68 223 304 66 29.0 6e-11 MIKLCIAGKNNIAVNSLEYILKNHFKPDQVAVIPNKNDFGVDSWQKSLLHYAFNNHIKVI TLEEAYELKQIIFFSLEFDRIVKVEKFKSDKLFNMHFSALPKYKGVFTSITPILNNEVES GVTLHCIDNGIDTGNIIDQYIFPININDTARDLYFNYLSYGEYLFKKNIQRIINNTYENF KQNNISSSYFSRQDININHKINFKKTSFEIHNQIRAFIFKEYQLPSINKTKIIKSTLTNE FIGYNMFEEFEEYFMISGIDGFKIIAQKYNAE >gi|197325097|gb|DS990369.1| GENE 84 85481 - 85660 68 59 aa, chain - ## HITS:1 COG:no KEGG:HH0095 NR:ns ## KEGG: HH0095 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 40 1 40 187 77 85.0 2e-13 MIHKLADVQSKNIGSGTRIWQFCVVLPNAIIGENCNICSHSSKSKVLLKLINCFKELCK >gi|197325097|gb|DS990369.1| GENE 85 85650 - 86051 314 133 aa, chain - ## HITS:1 COG:no KEGG:C8J_1079 NR:ns ## KEGG: C8J_1079 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_81116 # Pathway: not_defined # 4 133 6 135 135 204 79.0 9e-52 MDYKILNFDAKNDNRGSLIALENLKEIPFEIKRIYYIYDTKPDFPRGAHAHKELEQVLIM MDGSCEIVLNDGRNDKSIILNRPNIGLFIGKNMWREMRNFSYGAKLLVLASDFYNENEYI RDYDEFLRMVNDT >gi|197325097|gb|DS990369.1| GENE 86 86041 - 87069 699 342 aa, chain - ## HITS:1 COG:RSc0682 KEGG:ns NR:ns ## COG: RSc0682 COG1088 # Protein_GI_number: 17545401 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Ralstonia solanacearum # 4 332 3 330 354 364 53.0 1e-100 MRRNILITGGAGFIGSNFIIYFLGKYPYYKIINLDLLTYAGKLENLKEIGCNENYTFIQG DICDSELVARIFSEYEITDVIHFAAESHVDNSILNPQAFIQTNVNGTFNLLHHSYLNWFD SPNKPKTGKEDCVFHHISTDEVFGSLGESGYFSETTPYAPNSPYSASKASSDMLVRSYHH TYGLNTFITNCSNNYGPKQHDEKLIPTIIRNALRGSEIPIYGDGKNIRDWLYVEDHCRAI DLVFHSRFFGESFNIGGNNEKNNLEIATLICDILDKKKPQNRSYKEQIGFVQDRAGHDRR YAIDSSKIYKVFNWQPQESFESGILKTIDWYLREYEGLVYGL >gi|197325097|gb|DS990369.1| GENE 87 87066 - 87956 998 296 aa, chain - ## HITS:1 COG:YPO3861 KEGG:ns NR:ns ## COG: YPO3861 COG1209 # Protein_GI_number: 16123996 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Yersinia pestis # 5 292 1 286 293 373 61.0 1e-103 MVGIMKGIVLAGGSGTRLYPATLGVSKQLLPIYDKPMIYYPLSVLMLAQIQEVLIISTPK DTPRFEEIFGDGSWLGMKISYCVQKSPDGLAQGLILAEDFIQKDEIALILGDNVFYGQGF SPMLLEAKQRTKEGMATIFPYRVKNPKSFGVVEFDSKGKVLNIEEKPQNPKSNFAVTGLY FYDNEAISIAKSLKPSSRGELEITDVNNVYLKQGKLYAQSLGRGFAWLDTGTHDNLIEAS SFVQTIELRQGYKVACLEEIAYHNGWIGEQLLLERASLLKKSGYGDYLNKILEQDI >gi|197325097|gb|DS990369.1| GENE 88 88066 - 89361 845 431 aa, chain + ## HITS:1 COG:BS_gspA KEGG:ns NR:ns ## COG: BS_gspA COG1442 # Protein_GI_number: 16080894 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Bacillus subtilis # 116 296 79 255 286 68 31.0 2e-11 MFHIFFSADKNYIPYTAVLITSIIKNTNPQKSFKDFCTTPSDSLPSLDYPRLQYDNLDKL DKSEGYVFHILSDSIPKDLQTKLQNFIQELSAFYPCTLQIHIINDIDFAHFPISGAAHSS HLPYYRLKWQDYIKPAPQKCLYLDSDMLVLCDLRELFALDLKDNIAGIIGDCGSKNRKIK YQENNYKKTFYFDENYFNSGFLLINSKQYIKEQIWEKCENLAKKCTYIKAADQDLLNFTI PINKRLKLPFAYNFQCITLLYVLCKDECKNRLNYTREAFNKSFKNPKILHYGEKPWRYLQ SYQDYKGNNINDIWWEYAQQTPIFGDKLLKQKSQISDYKLFAILGYYALLYTTNFLGYFN LSKLLKSDNDSKLLQEVSKIPDSQFGLCCVLGEVILYARKHNKNLLNIIPKIYKIKKHYK KYATHKQAIKS >gi|197325097|gb|DS990369.1| GENE 89 89394 - 90488 855 364 aa, chain - ## HITS:1 COG:HI1698 KEGG:ns NR:ns ## COG: HI1698 COG0438 # Protein_GI_number: 16273585 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Haemophilus influenzae # 2 351 3 350 353 101 25.0 3e-21 MKIVLTIGDLSIRGGAERVVVNFAETLYENGHRVEILSFYRSNETLPYAISPQIKVSFMH KKSQDSMRKKPLYKLYYKIYESYLLNKMYPNADVIIFNNSPHFPFFKNPKTCYIKFVHSA FKRFLKRFNSFDALVVLSGRQIEIWKKYHQNVVVIPNFIKAFLDQTSDLNQKRVLCVGRI TPNDEKGFLRLVDIWEIVQQNSKNKEWKLCIIAGVESPKEEPFKEKLERKIIQKNLQNSV ILKPFSNEIYKEYLQASFYAMTSYAEGLPMVLVEASSCGLPCIAFDINTGPSDIIENRVS GFLVQDGDLQGYARAMQKLMENEELRHKMGSKAKEIVEEKFSKRKVLEQWEELFKVLKNK NRIA >gi|197325097|gb|DS990369.1| GENE 90 90523 - 92103 1213 526 aa, chain - ## HITS:1 COG:Cj1135 KEGG:ns NR:ns ## COG: Cj1135 COG0463 # Protein_GI_number: 15792460 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Campylobacter jejuni # 1 526 1 514 515 651 63.0 0 MKKIKISAVLIVKNAEATLQECLDSLQNFDEIILLDNGSSDNTQKIAQDFNVLHKNLKIY TSEFIGFGALKNLAVSYASNDWIFSIDSDEVLESNTFELLAKLFSNLEDFPPSCTLIAMP RKNLYNGEWIKACGWYPDFVTRVFCKNYTRFNDNIVHESIVIPKDAKVLKLDSGLKHYAF NGISHLLEKMQRYSTLWAQQNANKASSPLKAIIHGSWTFFRNYIFKKGFLYGYKGFVISV CNGLGAFFKYMKLYENTIQKPKSVSLIITTYNQKEKLALVLDSVRDLSVLPTEVLIADDG SKEDTRELIESYARTFPCPLRHIWQEDRGFMLSAIRNQAIKAAKGEYIIIIDGDMILHPL FVADHLAFATPKVFLQGSRVILDSPASQAMLEARQNNQIKAYESAFNLGGFKAKRCRILA RIIFEFSHLDSKFFDKKDFIKGIRGCNMSFYKSDCEAIKGFNENFVGWGREDSEFVARFL FNGGVFRRLKFAAVAYHIYHPENTRDMLESNHKIYLQTIKEKKILW >gi|197325097|gb|DS990369.1| GENE 91 92109 - 92819 516 236 aa, chain - ## HITS:1 COG:Cj0187c KEGG:ns NR:ns ## COG: Cj0187c COG0299 # Protein_GI_number: 15791574 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Campylobacter jejuni # 19 233 4 188 188 183 47.0 3e-46 MLDSKVTKNGVVLESRIKRIAILFSGNGSNLEALIRSLNGKYFKKQGKFTPKDSQGFLIG GLEFEFVEATKEDQGAFRVEVVLALSNKAEAYGLERAKRLGVKTRVLESKNFAKREDFDK ELVGILREYELDLCVLAGFMRILTPVFTSAIRAINIHPSLLPLFKGANGIKESFDSEMKL GGVSVHWVSEELDSGEIIAQGVIAKLESLEAYEAAIHCLEHYLYPLAVLEVISRDD >gi|197325097|gb|DS990369.1| GENE 92 92819 - 93058 455 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418605|ref|ZP_03656611.1| ## NR: gi|224418605|ref|ZP_03656611.1| hypothetical protein HcanM9_04947 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0191 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0191 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 79 1 79 79 94 100.0 4e-18 MSKERIKELEEEIEELSIQLSDMLCVALKLSGVVEAKMQEALDAYIDGLDEESLEYGVKE ILENIEKLKKNKPEFFGKK >gi|197325097|gb|DS990369.1| GENE 93 93102 - 94202 1077 366 aa, chain - ## HITS:1 COG:no KEGG:C8J_1094 NR:ns ## KEGG: C8J_1094 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_81116 # Pathway: not_defined # 5 360 7 368 371 264 42.0 5e-69 MSYFRFIVYSFAFFILLSFLSLGLIYFYDPMQIFHKSFLKEERFFGEMRLGARAIIKHYD FDSYILGTSMLQNTSAKEANRKLGGNWVNISPAASTTKERGIILNYLFRYQNPKTLIYSL DAFGDEVSTKPNFRLLYDESFLNDFEAYLNDRFIICTLTFSKKEKCIGKENLETLLQWIR EEKHQKRLGGFENWIKYNPDIFKQESLKSLPQSKPVEFDLNRIDVSKEQELLETFLLSFI KKYPNTQFHLILPPYSRLHFKINPKAFIERKKITYWLLEQTKDLKNVTIYGFDTLDYADD IGNYAGDTIHYKNDMNSLELDSIQNKKHILTPDNIESYFDIFEQKIQDYDLTPLINIVKD SKILEK >gi|197325097|gb|DS990369.1| GENE 94 94210 - 95754 983 514 aa, chain - ## HITS:1 COG:HP0855 KEGG:ns NR:ns ## COG: HP0855 COG1696 # Protein_GI_number: 15645474 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Helicobacter pylori 26695 # 1 514 14 527 527 392 46.0 1e-109 MVFSSYIFIFAFLPVMLAGFYGLKYFNQNFLAKLFLVLGSLFFYAFWEIKYLGILLFSIF ANYGIALLILKSLSKNNSKKNNQAKFYLYFGIFFNLALLGFFKYTDFFLENFNLFSKIFQ LDFSIPLPHILLPLAISFFTFQQIAFLVDCYKKIDVKDLEEDTFLGDSRIDFLDYCLFVS FFPQLIAGPIVHHKEMMPQFQTLFCNTWIEWDKIAKGVFIFSIGLFKKVFIADSFAKWAN NGFSIVENGGFLNMAESWVTSLSYTFQLYFDFSGYCDMAIGLGLFFGIFLPINFNSPYKS LNITEFWRKWHITLGKFLKDYLYIPLGGNKGSKILTLRNLFIVAFLSGIWHGAGFGFVIW GALHGIAMCLHRAYGYLLESFNWQKSAFLQSRFYKILCWFLTFNFLNLTWIFFRAENLQG ALNLLQGMFGIVWVELPEKARHIPKLLAQIEGRNETLFYLIIGFIVILCAKNSIELLEDF KPSWKNVLFAGILFYVSIVTLSITPYVEFIYFNF >gi|197325097|gb|DS990369.1| GENE 95 95773 - 96822 968 349 aa, chain - ## HITS:1 COG:jhp0382 KEGG:ns NR:ns ## COG: jhp0382 COG2404 # Protein_GI_number: 15611450 # Func_class: R General function prediction only # Function: Predicted phosphohydrolase (DHH superfamily) # Organism: Helicobacter pylori J99 # 1 348 1 346 347 363 54.0 1e-100 MHFFHLSHIDLDGYGCQLVSNEFYKNKASQIFFYNANYGKEVLARLEQIFRDIRKNKVES HILISDLNLTLNECEELKKEILELNLNGYQVSYELLDHHKSGQECANKFEWYVLDTKRCA TKIVYETLLERFGIDESVRVWLEPMVEMINSIDLWNEEGFAFEFGKVAMRLIVECKEVNR FMFDDEDRAYKLALLRESSRFLGDERGHILLDNAILEMKKCYLKGSLLSDTLDNLVSRFQ NELLGQKADKCSLYCGKYRGFLSYGIGNISVLANLFLKTHADFDFFLDVSARGNVSLRAN GNCDVSAIAKKYFNGGGHPNASGGKIEDFKESFIYEDIKDSVEQVFKDC >gi|197325097|gb|DS990369.1| GENE 96 96832 - 99096 2405 754 aa, chain - ## HITS:1 COG:HP1041 KEGG:ns NR:ns ## COG: HP1041 COG1298 # Protein_GI_number: 15645655 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhA # Organism: Helicobacter pylori 26695 # 13 750 10 729 733 687 55.0 0 MGLAQAGQKASFFSKISPFLSQLTGSKDLTVVFFIVAILAIIIVPLPSALLDFFLAISIA LSALIILIALYVKKPTDFSAFPTLLLIVTLFRLSLNIATTRMILSNGHLGPEAVSDIITA FGQFVVGGNYVIGIILFIILVIINFMVVTNGSTRVSEVKARFTLDAMPGKQMAIDADLNT GLIGQEEAKARRDELAAEADFYGSMDGANKFVKGDAIAGIIITLINIIGGFLIGVFQRDM SVADAASTFTILTIGDGLVSQLPALIVSTATGIIVTRFSKEGENFASGIIDQLINESKTL MIVGCILLMFALVPGLPTLSLGFVGLIFLSLALLLNKQKDGEVWKYVESLFQKVRKKETP SEQTTLPQRQAKRGGQTPQNAQQAAPKPQPQESEEERKKREEAEIDKALKVKILRVGLGY QLIKFADPAQGGELVNKIRAIRKTMATEYGILVPMVHLRDDLNLAPDEYQILLKEIEIGK GKIMVDKYLAIASSGFVGELPDGIPTKEPVFGLDAYWIDEDKKEDAIIEGYTIIDGATVI STHIQELIKQYAEELLTRQEVANLISKLGQDYPILAEEIKGVGIGSIQHILKELLHEQIP IKDMLSIAEAIADGYPAYKADLPTLSEYVRACLKRLITHNFQSDDGILRYFVLSPTMEQF LLEKLPDQQKIGQRLRLSPTESQSLLDAINVAYQKGVSMGAVPTIIGGVPMVLRKPLAIF LEQYGFGRNIVVLSTAEIDYQSKFEILGSIDFPV >gi|197325097|gb|DS990369.1| GENE 97 99246 - 99521 450 91 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224418610|ref|ZP_03656616.1| 30S ribosomal protein S15 [Helicobacter canadensis MIT 98-5491] # 1 91 1 91 91 177 100 4e-43 MAQDSAKKREITSAFARNPKDTGSVEVQVALLSDRIKTLTEHLKVNKKDHSSRLGLRKIV SHRKRLLSYLKGKDFKRYATLIEKLGLKDRG >gi|197325097|gb|DS990369.1| GENE 98 99518 - 101131 1597 537 aa, chain - ## HITS:1 COG:HP1523 KEGG:ns NR:ns ## COG: HP1523 COG1200 # Protein_GI_number: 15646131 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Helicobacter pylori 26695 # 1 523 75 607 623 454 47.0 1e-127 MIFNAKTYHKSIFRVGERLIVSGKVQIQGSFISVIQPKVLKQTGKILPNFHAKGARVLLL QEFVGSLDLDLLSQVYPNIPLEILEALLLIFQPNLEFFVEYSKNRGFFGKNLEALKFVEI YEYMRQLQTKKVEFPSICALRGDFRQWQDSLPFKLTKGQEKAILEIASSLNSQKSARRVI VGDVGCGKTMVIFASVLIAYPKRSVLMVPTSILAKQIYNESQKYLPKNLKVALWTQGAKK GDLEQSDFVIGTHALLYQKIQNFALVMIDEQHRFGTAQRNTLERMFEKNQKRPHILQFSA TPIPRTLAMIESEFLDFSFILDLPFKKDITSRVIAKADFKELIAHIQREISLQHQVLIIY PLVEESKAMDYVSLKEGEEFWRRHFSGVYVTHGKDKLKEEVLEEFRDKGNILLATTVVEV GISLPKLSTIVIVGAERLGLATLHQLRGRVSRNGLKGYCFLYSNQANNERLKRFCQIQSG FEVAQMDLEYRNSGDLLSGEQQSGKQFEWINLGSDEKVIELAKVALKKMNQENRQRN >gi|197325097|gb|DS990369.1| GENE 99 101356 - 102597 1540 413 aa, chain - ## HITS:1 COG:HP0657 KEGG:ns NR:ns ## COG: HP0657 COG0612 # Protein_GI_number: 15645281 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Helicobacter pylori 26695 # 2 411 18 426 432 329 43.0 7e-90 MAVELKKMEVKGVEIPILCEKNSQLPLFFIQIVFKGAGGVSNQKNYGLSDVVSSLLNEGT QKLGVTKFAQKLEEKALSLSVGSGLETMSFTLSGMSKEQESGLKYLKDLMQDPNFTPKAL QKVKENSLIGILEKENDFDYQANRALSAMLFKGSVLENPLSGTKETLAQMSLEEIEQFYH KYVNLKSAIVIVGGDVDYAKITRSLADLLAILPVGDSVEIKPFSANDKPQTKRQIKETKQ AYIYFGSPLNVENLQKESALIKVASFVLGGSGFGSRMMEEVRVKRGLAYSAVMRLEAGKT FSYARGYLQTSLKNEKEAQKLVQEVVNEFVEKGISEQELQEAKQYLLGSEPLRNETLSQR LGSAFNNYYKGLPLDFNAQVLQEIQNLTLKEVNDYIKSHKEITKLTFSVVSAD >gi|197325097|gb|DS990369.1| GENE 100 102654 - 103745 1167 363 aa, chain - ## HITS:1 COG:HP0656 KEGG:ns NR:ns ## COG: HP0656 COG1060 # Protein_GI_number: 15645280 # Func_class: H Coenzyme transport and metabolism; R General function prediction only # Function: Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes # Organism: Helicobacter pylori 26695 # 18 363 32 377 383 553 74.0 1e-157 MTMQEKIDRAIVRTKIPRVSKEEILDLMQNASLKELGERAFRVKQVLHPDNITTFVVDRN INYTNICWVDCKFCAFKRKINESETYILSFEEIDKKIEELLAIGGTQILFQGGVHPSLKI EWYEDLVSHISQKYPQITVHGFSAIEINYIAKISKIPISEVLKRLQKCGLASIPGAGAEI LSDRVRDVIAPKKLDSDEWIEVHREAHKIGMRSTATMMFGSVENDLDIIEHWERIRNIQD ETNGFRAFILWSFQPAFTPLQKEFPTIHKASSNRYLRLLACSRIFLDNFQNIQSSWVTQG SYIGQLALLFGANDLGSTMMEENVVAAAGARNSMNQAEMIALIKDVGEIPAKRNTAYDIL ETF >gi|197325097|gb|DS990369.1| GENE 101 103747 - 105987 2558 746 aa, chain - ## HITS:1 COG:Cj0129c KEGG:ns NR:ns ## COG: Cj0129c COG4775 # Protein_GI_number: 15791517 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein/protective antigen OMA87 # Organism: Campylobacter jejuni # 24 746 15 739 739 563 41.0 1e-160 MSFFPKTLSFVVAAFALSSSLKAAELPIIKEIRYEGLNYISPLIANEIAKIKINEVMDIE SVNKSIVNFYEQGYFKDIWITEENGILTYHFVEKPVIASLVVSGYGAGKDQSVLDKEIGL KKGDVYDEIKIANTRKKIISLLESQGYYNTVVEVKTEEISQNALKVTLEINKGEEIIIRK ANYYGREELKVSRIEASTANKERDFIGWMWGFNSGKLQINEIENDALRIRDLYMQKGFLD AEVDTPFLRTDFTTYNAELDFYIKEGQLYKVSGVDIVLEEDVIPLEDLYDIVHLKKGKKF NISTMRKDVEAIKYKIGDLGYAFTRVTPDLDKNQENAEVRVVYYIQPGKKVKVRDVLISG NSKTLDRVIRRNVLLAPGDQYEMSKIERSKNAIMRTGGFDSVDIEEKRVDEENIDLLVNV KEGKTGEFTFGVGYGSYDGIMGSASIKDRNIFGTGLTAGLYFDKSEISTSYRVNLYNPAV LDSNYSLSTDVYQTDYVDYDYREVTQGISLVGGRRITDTLEASMGYTYQKSKLSEFNNPF YSRYYKGEYIKSSVIPGLYFDNTDSYFFPKNGWKAGGSLEYAGVGGDAKFWKYFGNLYYF KSLEDWTDLDLIFRFRSKFGYIDDNGYVPINERFYLGGVSSLRGFQSNSITPRDKYGVRI GGNQTLYGSVELSYGLFETVQMRLSAFYDYGMLGEDKLTQIQRDSVGVALEWISPIGAIT FIVPKALNPKKGDDTSSFEFTMGQRF >gi|197325097|gb|DS990369.1| GENE 102 106115 - 106942 820 275 aa, chain + ## HITS:1 COG:HP1380 KEGG:ns NR:ns ## COG: HP1380 COG0287 # Protein_GI_number: 15645990 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydrogenase # Organism: Helicobacter pylori 26695 # 11 273 1 263 265 284 53.0 1e-76 MQAGIIGLGLIGGSLGLALRETGMFKRIVGLDNNEIHLQQALSLGLVDEGVELDEIKLCD VIFLATPVEAILEILPKLIGIAPHTTIIDLGSTKYLISQNIPQEIRKNFVCAHPMSGTEN FGPKAAFKELLAHHIVVLTDLEQSGEFQAAMAKEIFISLKMNIIKMDSKSHDNHAAFISH LPHIISYALANTVLSQQNPKDILALAGGGFKSMVRIAKSSPRMWSDIAKQNKNELLKSLD FFQKELEFATSLIKEEKWEELAKWMEKANSLYEIF >gi|197325097|gb|DS990369.1| GENE 103 106944 - 108116 1278 390 aa, chain - ## HITS:1 COG:HP1183 KEGG:ns NR:ns ## COG: HP1183 COG0475 # Protein_GI_number: 15645797 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Helicobacter pylori 26695 # 4 379 5 380 383 281 46.0 1e-75 MDSLITFGVISLLIVVAPFFSALTRLPLVVIEIMLGALAFYFGFFKHFDSLEFVAHIGFL FLMFLCGLEVDLKTFSRLGVGFIKSASVYFFMLYGVAVLYVFYSGLSVFYIAALPVMSLG MIMALLREYPKNTQWLQMALNVGILGELISIVVLVLLNGVYSYGITWKLYETLFVLFAFL GVIVGIFKVANVLFWWFPTLKFYVIPQDSSKNQDIRFSVMLFLTMIGIAQILDLERALGA FLAGMILATYFHHQKGLAEKLNEIGFGFFVPLFFVYVGSTLDLDLIFQKPHLFSEVFVII VVMVLLRIIGAFVAYRKYFESYKEVLLFAFSHSMPLTFLVATAQLGKQFGAISTEEYYAF IIAALLEGILLTICIKLISNYKAKDTISLT >gi|197325097|gb|DS990369.1| GENE 104 108254 - 109147 809 297 aa, chain + ## HITS:1 COG:Cj0791c KEGG:ns NR:ns ## COG: Cj0791c COG0520 # Protein_GI_number: 15792129 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Campylobacter jejuni # 26 297 8 276 424 290 58.0 2e-78 MEKDFFAPLLPHNFKNLNTKEKKALLKKEILLAKNKYYFDWTASGLAAKCIEKRIKKILP FYANPHSESSLHSKIIGDTYEQARKNLKQIFGLDSSFALISCGFGSSAAIKKFQEILGIY LPPQTRKTLKLHEIDSSKLPLVIVGPYEHHSNELSFREGLCEVIRIPLNEEGLVDLKALE QTLITNVHRKIIASFSLTSNVSGILSPFMQISNLIRQYGGIVCFDMASSSAYFDIPSSFY DAAFLSPHKLLGGISSSGILIIKRNLINKTLPPTFCGGGVVGYVSRTSQIYFANEAS >gi|197325097|gb|DS990369.1| GENE 105 109373 - 109717 393 114 aa, chain + ## HITS:1 COG:HP0405 KEGG:ns NR:ns ## COG: HP0405 COG0520 # Protein_GI_number: 15645033 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Helicobacter pylori 26695 # 2 114 323 437 440 116 48.0 1e-26 MQTKEKLICIFKEFLETHPKITLYGNPNYNIIGTFAFNIQEKSPYEIATILSNNYGILVR AGCSCAGPYGHDLLNLEDNTTFTQKPGWIRVSLHYTHRKKDLHYLCECLKKLCK >gi|197325097|gb|DS990369.1| GENE 106 109783 - 111474 2449 563 aa, chain + ## HITS:1 COG:Cj0574 KEGG:ns NR:ns ## COG: Cj0574 COG0028 # Protein_GI_number: 15791934 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Campylobacter jejuni # 2 559 3 559 566 741 65.0 0 MQLNGSEMVIHALKNEGVKVVFGYPGGAALNIYDEIYKQNFFEHILTRHEQAAIHAADGY ARASGEVGVAIVTSGPGFTNAVTGIATAYMDSIPLVIISGQVPTSLIGTDAFQEIDAVGI SRPCTKHNFLVKNIQELPKILKEAFYIARSGRPGPVHIDLPKDISATIGEFNYPNEIKLQ TYKPTYKGNPRQIKKVAQAIKESKKPLLYLGGGCVASQSTNLIKEFCEITHIPVVETLMA RGVMPHNHPDLLGMVGMHGSYVANMAMSETDLIIALGARFDDRVTGKLSEFAKYAQIVHV DIDPSSISKIVDVTYPIVGDVSSVLEELSGLIKEDYEVKNILAWRETLERYDKLHPLSYE DSEEILKPQWVIKKIGEILGKEALISTDVGQHQMWAAQFYPFSFPRQFITSGGLGTMGFG LPAAMGAKKAFPDKTSINISGDGSILMNIQELMTCLASQIPVINIVLNNNYLGMVRQWQT FFYENRYSETDLQLQPDFVKLAESFGGVGFVVHTKEEFVQCLNKAINSNKPALLDVRIDR FENVLPMVPTGGALFNMMLEYKE >gi|197325097|gb|DS990369.1| GENE 107 111478 - 111948 589 156 aa, chain + ## HITS:1 COG:Cj0575 KEGG:ns NR:ns ## COG: Cj0575 COG0440 # Protein_GI_number: 15791935 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase, small (regulatory) subunit # Organism: Campylobacter jejuni # 3 155 1 153 154 149 50.0 2e-36 MEIKRVITVTVLNEHGVLSRISGLFAGRGYNIESLTVAPIFDTNLSRITITTQGDKKVLE QILKQLHKLIPVLKVLEDEQIIEQESVLVKFSNKESLSELSTIFASYNGKLLEVNEKYAI FMACDCHMRINSLLQAIQIYKPKDITRSGISAIEVN >gi|197325097|gb|DS990369.1| GENE 108 111957 - 112979 1104 340 aa, chain + ## HITS:1 COG:HP0196 KEGG:ns NR:ns ## COG: HP0196 COG1044 # Protein_GI_number: 15644825 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase # Organism: Helicobacter pylori 26695 # 31 338 15 323 336 291 49.0 1e-78 MLLNQIVSFLKEKEVLGEILQWNEENKDWIEHSSFFDSEAITHIESPLKATCDSLTFLEK EKYLADIEKTKAKVILTRKAYVKNLPKTSLAFVSENPYLAMAYLTKFFAKPLFSSKIPPK IAPNATIAHNATIGNGSEIDENSVVMAGVVIGENVKIGKNCILYPNVCIYNDCEIGDNVS IHANSVIGSDGFGYAHTKDGQHIKIHHNGKVVLESEVEIGSNTSIDRAVFGQTRICKGTK IDNLVQIGHNCEIGEHSIIVSQAGISGSTTTGRNVVLGGQSGSAGHLHIGEFTQIGAKAA IAKSVPAFGKFSGHPLLPIQDWLKLQALFKKMLKKESQKD >gi|197325097|gb|DS990369.1| GENE 109 112981 - 113223 150 80 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418622|ref|ZP_03656628.1| ## NR: gi|224418622|ref|ZP_03656628.1| hypothetical protein HcanM9_05032 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0175 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0175 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 80 1 80 80 106 100.0 7e-22 MKQKIKKLVYTIALDNQPNDESSIVISKINSPKKECKKHSMISISFCPNDKKDSDTRCEI IIPKKKVKELRKALKQAYKD >gi|197325097|gb|DS990369.1| GENE 110 113248 - 114648 1520 466 aa, chain - ## HITS:1 COG:jhp0428 KEGG:ns NR:ns ## COG: jhp0428 COG0008 # Protein_GI_number: 15611495 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Helicobacter pylori J99 # 1 466 1 463 463 514 58.0 1e-145 METIVTRFAPSPTGYLHIGGLRTALFNYLYARANKGKFLLRIEDTDLARNSTDAKEAIIQ AFEWVGMDYDGEVVYQSQRFPLYQQYIEQLLKEGKAYYCYMSKEELDLLREEQRKRGETP RYDNRYRDFQGTPPSGIQPVVRIKAPLSGEICFKDGVKGEMRINAKELDDFIIARSDGTP TYNFCVAIDDALMGVTDVIRGDDHLSNTPKQIIIYEALGFKVPRFFHVPMILNPQGHKLS KRDGAMSVMEYKEMGYLPEALLNFLVRLGWSHGDQEIFSKKEMLEFFNPNDLNSAPSAYN QEKLLWLNSHYIRELSNDSLNMLLSENFNVETPQEKVQEILYPEIKERSKTLVDFVEILK DCLQEPKRYDEKMQHKVSSEENIRLLGEFCAYIKALKKPIGTAQEAENEMATFADFHGIK AKVLFVPLRYALLGKSGGVGIAPLLACLDKEEIVKRIQAAIQTLKN >gi|197325097|gb|DS990369.1| GENE 111 114919 - 117189 2904 756 aa, chain - ## HITS:1 COG:XF2272 KEGG:ns NR:ns ## COG: XF2272 COG0620 # Protein_GI_number: 15838863 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Xylella fastidiosa 9a5c # 5 753 7 757 758 670 45.0 0 MSSIVGFPRIGQNRELKKALEAFWAGKCSQSDLENVAKDLRKKHWEAQKHLDYVCVNDFS YYDNILDLAYALGAKPQRFKDLSGLEGYFAMARGHAKGVACEMTKWFNTNYHYVVPELSQ TDVYQAQIQTLKDQYNEAKALGYTPKISLIGLFTFFGLSKIAQGDPKAIFAKLKSAYLDL IDEIAKLDLEVVIEFSEPIFVRGWHNDTPQAQCVYDKQAIKEVYESIAQKGIKTIVTTFF EHSNELTEVLLQTSIYGIGLDFIAGAKNTQSLGAIAASNKVLFAGLIDGRNIWVADLESK LKTLESITAQIPKERVVITTSCSLLHVPFGKDDESKMDSQILSWISFAKEKLEELRALED LFKNGVNGESKAFFEANKAINNARKTSEKTNNKAVRDRVSKNTLKSRDVAFKDRIKIQRD ELGYPDLATTTIGSFPQTPELRALRLGYKKGEISKDAYEAGIKEYIQDCVKFQEEIDLDV LVHGEPERNDMVEYFGEQLEGFVFSQNGWVQSYGSRCVKPPIIFGDVARPKAMTLDWILY AQSLTKKIMKGMLTGPVTILNWSFVRDDMTRSQVCEQIALAIADEIDDLQKGGVKIIQVD EAAFKEGYPLRAENIKEYERWALECFKVSTAVAKANTQIHTHMCYSEFNDIIKTIEAMDA DVISIETARSGNELLKVFKEVGYTHEVGPGVYDIHSPRIPSTQEIIDQIKALLEVLPKEQ LWINPDCGLKTRKWEEVKPSLKNMVEAVKAVRGTLK >gi|197325097|gb|DS990369.1| GENE 112 117335 - 117907 656 190 aa, chain - ## HITS:1 COG:MA0410 KEGG:ns NR:ns ## COG: MA0410 COG0110 # Protein_GI_number: 20089303 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Methanosarcina acetivorans str.C2A # 2 184 9 191 191 206 53.0 2e-53 MNVFEKDLAGVPLDSRDPEVAPIIEVIKHTQKLITKLNNGEKSEEQVREILSQIMGREVD SSLWLLPPFYTDFGRNIYFGKNVFVNTACTFMDRGGIYIDDEVFIGPKVNLITINHDINP YNRTTTICKPIYIQKRVWIGVAATICPGVRIGENSIVGANAVVTKDVPPNSIVGGNPAKL IKKIEIENYK >gi|197325097|gb|DS990369.1| GENE 113 117923 - 118504 634 193 aa, chain - ## HITS:1 COG:HP0630 KEGG:ns NR:ns ## COG: HP0630 COG2249 # Protein_GI_number: 15645254 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Helicobacter pylori 26695 # 1 193 1 193 194 273 66.0 1e-73 MKNILLINGSKKFGSSEGRLSATLQEVAKETLQSFGCNIVETHIDKGYEIESEVQKLLDS DVWIYQMPGWWMGEPWIVKEYIDKVFMAGAGKFCASDGRHSNNPSKNYGKGGLLHDKKYM FSLTWNAPIEAFTDKDEFFGGVGVDVVYLHLHKAHEFLGMQALPTFICNDVVKNPQVEQY IQEYKAHLQKVFG >gi|197325097|gb|DS990369.1| GENE 114 118501 - 118980 373 159 aa, chain - ## HITS:1 COG:Cj1563c KEGG:ns NR:ns ## COG: Cj1563c COG0789 # Protein_GI_number: 15792868 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Campylobacter jejuni # 16 152 1 137 143 147 54.0 1e-35 MLYGFRFLVDNKEAFVAYTIIEVEKKTGVSSHTLRFWAKKGLFPFVEKDDNQVKYFSERD VEWVRWINWFRKAQMDIPTIKYYIELANKGDCTAKERREMIARQKEIVTDAIEELQSVLE TLNYKLGVYDEMLHNNIDGFNPQSKQYKGCKKDCKKENA >gi|197325097|gb|DS990369.1| GENE 115 119047 - 120171 309 374 aa, chain - ## HITS:1 COG:no KEGG:NMCC_0073 NR:ns ## KEGG: NMCC_0073 # Name: not_defined # Def: hypothetical protein # Organism: N.meningitidis_053442 # Pathway: not_defined # 72 330 6 248 318 100 31.0 1e-19 MKLLVFSDFDSRLKWGLALANYLRSIFESVIVYHRENTLEQVKAYVRQEYTMKRYGSMSE MLEKEDIFLKAEVIILAIGGTKNIYFLNALGRFFRKYQQRPIVIAGMNGLTDCSDLHAVL CRIGADIICINSKRNFRIFKEKLQDLNVKNDNLLMLGYARLYGDNTEKSRNCNNGKQITL LIGQANMPAQKKQQSYLMKKVYEYALKYPDHLVVIKERSITHKEHMNAYFKKKEIFQLWR WRYKIKRKPDNILISNEPIESLLGKADVCLGFYSTALIEAIHLGIPTIVIQDFGIGKNIG NHDFLGSGVLHSLNDWIDNKLPIVNKGWKDENCNFASEVEIDLLKKAVIKKIKEKREEVV QYYSEEKFPYFYDK >gi|197325097|gb|DS990369.1| GENE 116 120251 - 121039 559 262 aa, chain - ## HITS:1 COG:YPO3111 KEGG:ns NR:ns ## COG: YPO3111 COG1232 # Protein_GI_number: 16123277 # Func_class: H Coenzyme transport and metabolism # Function: Protoporphyrinogen oxidase # Organism: Yersinia pestis # 1 252 179 423 427 204 42.0 1e-52 MDEILMGAMSEDTPVTYYAKEMYYPVKGGYRSFLQNMVKEIDIVYQKEATIIDSEKKIIY FSDETKVKYEKLISTIPLPALVKMLKNTSQDILESSRHLYATSVALVSLGFDKKIPKHLW YYVYDEDVFFARFYSPSMKSAYNAPKDCSSIQVEIYFSDFKTLEKMSNNCSDLADFFIKH VKEKLFQMNFCKEADIVCEDFRIIPYANVIFNHGMEKYREELLDYVKGCGILTCGRFGEW DYLWSDQSFLSGMEAAQQIENG >gi|197325097|gb|DS990369.1| GENE 117 121328 - 121768 421 146 aa, chain - ## HITS:1 COG:YPO3111 KEGG:ns NR:ns ## COG: YPO3111 COG1232 # Protein_GI_number: 16123277 # Func_class: H Coenzyme transport and metabolism # Function: Protoporphyrinogen oxidase # Organism: Yersinia pestis # 23 141 30 143 427 95 38.0 4e-20 MEDENIVILGAGIAGISAAYHLKQKNKKVKVFEKDNDYGGLCGGFFINTAKGKFWFDNAV HLSFAKDQSVKKIFFATRHYTHIPDSLNYCSGIYVKHPVQSNLYPLPLDIKIAVIKGMLQ NAHGDIKVENFEQWLKSQYGDFFSEG >gi|197325097|gb|DS990369.1| GENE 118 122183 - 123085 695 300 aa, chain - ## HITS:1 COG:YPO3112 KEGG:ns NR:ns ## COG: YPO3112 COG0451 # Protein_GI_number: 16123278 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Yersinia pestis # 1 269 1 253 285 89 27.0 9e-18 MKILLTGATGFIGTNFILQLYKKYEIIALVRKSSNTSKIEQFCKVFYYERDMQKLSNFLR KENIDGVVHLAALYIKNHDTYQVSSLIEGNITFGVELLETLYMIDFKGWFINVGTFWQFY KNLPDNPLNLYAATKTAFLRVADYYIQVAKFRFTTILLNDTYGPNDLRPKIFNIWLEALT SGKQIKMSGGEQIIDILYVDDVIDAFDICINLLTKKEGMLLRNRKVALHSKERKTLKDIA KIFKDCFGQEIDIKWGALPYSLRENFIPYEGGDELPCWEQKITFQQGFNMIKDCYNDKND >gi|197325097|gb|DS990369.1| GENE 119 123087 - 123650 487 187 aa, chain - ## HITS:1 COG:MTH1790 KEGG:ns NR:ns ## COG: MTH1790 COG1898 # Protein_GI_number: 15679778 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes # Organism: Methanothermobacter thermautotrophicus # 4 180 7 180 185 124 39.0 1e-28 MEKIETDFDGLYILKRSMFKDNRGEFIKHFSEECFRQNSLDTDFKESYYSVSKKGVLRGM HFQLPPYEHTKLVYVSSGKILDVVVDIRLHSSTFGLFFKIVLSSKKSSFLYIPKGFAHGF LCLEDNTRVHYLQTSVYSKNHDSGILYDSFGFNWLEESSKYEVKNLIISQRDLSFESLKD FKLKKVF >gi|197325097|gb|DS990369.1| GENE 120 123702 - 124604 644 300 aa, chain - ## HITS:1 COG:YPO3112 KEGG:ns NR:ns ## COG: YPO3112 COG0451 # Protein_GI_number: 16123278 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Yersinia pestis # 4 289 3 283 285 156 36.0 5e-38 MKNILISGVNGFLGSYLARELSKEYQVVGLKRSTSDICRLENIENLILCDIDKVGLEKIF KKYKPCLVFHAAVCYGRGNEKLSNIVQTNMLLSIEMIELSIAFNVGTFFNTDTMQQAYLS YYTTTKKHLRDYLVSLSQDIQIINCKLEHMYGYNDGKDKFVGYLVNSLQNKIPKISLTKG EQKRDFIYIKDVIQAYKILLKNVEHLPRFFEIDIGTGEQVSIKEFCLYLLCQFEKYQYDG NNTELDFGAIPYREGEPMSIDEDIKPLLALGFIPKYDYKKGIDDMLSKIYNNGILGGGGL >gi|197325097|gb|DS990369.1| GENE 121 124585 - 125673 998 362 aa, chain - ## HITS:1 COG:STM2091 KEGG:ns NR:ns ## COG: STM2091 COG0451 # Protein_GI_number: 16765421 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Salmonella typhimurium LT2 # 4 352 5 353 359 350 47.0 2e-96 MCFNIYKNKKIFITGHTGFKGSWLSLWLNLLGAKIYGYSLMPNTNPNHFKIINLQDKLAQ NYFADINDLKKLEDAMVESDPEIIFHLAAQPLVRYSYKNPLETFQTNAMGTFNILNCARK LKSLKAIVIITTDKVYENKEWLWGYREDETLGGYDPYSASKACAEIITNSMRQSFFNVEK FKQTHQVLIASVRAGNVIGGGDWSEDRLIPDIIKGANESKTTIIRNPDSIRPWQHVLEPL CGYLALGEKLLKGEKEFATSFNFGPNNEGDLSVKNVLELATSLWNKISYEISVDLNAPHE ANLLMLDISKARKILGWKPVLDSRLSIEWTIEWYKKFYENKKILTEQQLQKYGEKYHEKY FN >gi|197325097|gb|DS990369.1| GENE 122 125682 - 127013 932 443 aa, chain - ## HITS:1 COG:STM2090 KEGG:ns NR:ns ## COG: STM2090 COG0399 # Protein_GI_number: 16765420 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Salmonella typhimurium LT2 # 4 440 1 432 437 499 53.0 1e-141 MNNMGCKNLKQDILSKVKEYYSLCHKDEQIQFIEGKTKINYAGRIFNEKELEYLIDSSLD FWLTYGKYSEKFEKELAKFLGVRWAFLVNSGSSANLLAFYALTSPLLKERQIKRGDEIIT VAAGFPTTVAPIVQYGAIPVFVDMELKYANIDVSQLDLALSSKTKAVMIAHTLGNPFNIK VIREFCNKNNLWLIEDNCDALGSKYDGKYTGTWGDIGTSSFYPPHHITMGEGGAVYTSNL ILKKIILSMRDWGRDCWCKSGVDNTCGCRFTQQFGSLPEGYDHKYVYSHFGFNLKVTDMQ AAVGCAQLEKLPSFIEKRRNNYRKLYKELRTIEQLELVEEQPSSEPSWFGFMMTVKDDAK FERNDIVAFLEKNNIQTRSLFAGNMIRHPAFSSLKMGRDYKIVGELKVTDKIMTNSFWIG VYPGMDDEKINYMISKIKEFCMR >gi|197325097|gb|DS990369.1| GENE 123 127030 - 127830 791 266 aa, chain - ## HITS:1 COG:YPO3115 KEGG:ns NR:ns ## COG: YPO3115 COG1208 # Protein_GI_number: 16123280 # Func_class: M Cell wall/membrane/envelope biogenesis; J Translation, ribosomal structure and biogenesis # Function: Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) # Organism: Yersinia pestis # 1 264 5 261 261 321 58.0 9e-88 MKVLVLAGGLGTRLSEETGLKPKPMVEIGGKPILWHIMKIYSYYGFNEFIILTGYKGHVI KDYFINYYTQYSDITVDMLDNSVQIHNTRHEPWKVTMLYTGQDSMTGGRILHAKDYVSDE TFMLTYGDGVSDVNINDLLSFHKSHDKAITMTSVLPEGKFGALDIDSSTNRIKSFTEKPK GDANLNNAGWINGGFFVCEPKVFDYIKEGDMTVFEQAPLRNLAQDGELYSYQHHGFWKCM DTLKDKNDLNKMWLGNKAPWALWQNQ >gi|197325097|gb|DS990369.1| GENE 124 128611 - 129726 369 371 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253826816|ref|ZP_04869701.1| ## NR: gi|253826816|ref|ZP_04869701.1| capsule biosynthesis protein SiaB [Helicobacter canadensis MIT 98-5491] capsule biosynthesis protein SiaB [Helicobacter canadensis MIT 98-5491] # 1 371 325 695 695 693 100.0 0 MNNNVMCFEVAIEALKYKKVDARMAKAVLEAFCMLEESKYLAVVNKIYPLYDEFCYKNNL KVPQRFTQAYAKYNYSLKETYNKKPVDISMEILDKFEVLVPTYQRKEAIISTIRNIKEVN KWIHMRVVDNASTDGTYEALQELAKEYPNLYVSQNEENLGYAGSMVRLLKECSRKFGIFT SDEEPIIVENTIKAIQYMIDDNIDFLSSQFFRKNSFFRGKANNYLMSPEEYMRASFFTSG IIFNMNLLQKYQDIIVKHTPRKQVYPEIIFAIVASIFGKCFWFNLPTAYILKYQLPTHSH DDTEEKSYTCLIERWRQFQRFMQFFQELFQETIEEKYKARIDSVMRHSASEIFFGLKNAA KREYKTLSEYF >gi|197325097|gb|DS990369.1| GENE 125 130133 - 130597 558 154 aa, chain - ## HITS:1 COG:Cj1143_2 KEGG:ns NR:ns ## COG: Cj1143_2 COG1083 # Protein_GI_number: 15792468 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: CMP-N-acetylneuraminic acid synthetase # Organism: Campylobacter jejuni # 6 145 1 135 218 122 46.0 3e-28 MKERVIAIIPARGGSKGVYKKNIALVGGKPLITYTIEAALNSKIFSRIIVTTDSEEIANL ASEYGVGVLERPKELATDTASSIDVISHVLGEIQQEEYSHFVLLQPTSPLRTARHIQKAW ELYNTEMATTLVSVAGVDECPQKMLVREGDKLAS >gi|197325097|gb|DS990369.1| GENE 126 130609 - 131742 886 377 aa, chain - ## HITS:1 COG:Cj1142 KEGG:ns NR:ns ## COG: Cj1142 COG0381 # Protein_GI_number: 15792467 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Campylobacter jejuni # 2 377 1 370 371 344 49.0 1e-94 MIKKIVFLSGTRADFGKIKSLLQVCADLDSVEYSVFVTGMHMLSKYGSTFKEIDRFTTKT YKFINCFEGEPMEIVLSNTIDGFSKYVHEYKPDLIVVHGDRVEALAGSIVGSLNNVLVAH IEGGEKSGTVDEIMRHAITKMSHIHLVANQEARNRIVQMGEIAENVFIIGSPDIDIMCSK LPDIDVVREKYQIKYENYHIVLFHPVTTELDRFEKYASIFVEALLESSEENYVVIYPNND MGSALILKQYEKFKGRNNFRLFPSINFECFLTLMKNATSVIGNSSAGIREAPFYNIPSIN IGTRQMGRSNIETILNVDYDKEQIKAAIKEIIQAKTNVNNNIDRVRFGEGSSAKQFKKLI KSEKIWNVSVQKHFVDR >gi|197325097|gb|DS990369.1| GENE 127 131735 - 132781 761 348 aa, chain - ## HITS:1 COG:Cj1141 KEGG:ns NR:ns ## COG: Cj1141 COG2089 # Protein_GI_number: 15792466 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sialic acid synthase # Organism: Campylobacter jejuni # 19 347 15 343 343 436 64.0 1e-122 MKTPYIKLGDRKVGLEFKPLVIVEIGINHGGSLQVAYEMVDAAWKAGAEVIKHQTHVVHD EMSVHAKKVIPGNANVSIYDIMEECALSEEEEIELKRYVENKGMLFISTPFSRAAADRLE RMGVMAYKIGSGECNNYPLIEHIARFKKPMIVSTGMNDIKSVCKTVEILRRHNVPYALLH TTNLYPTPAHLVRLGGMEELKNNFDDAVIGLSDHTTNNRACFAAVALGASIVERHFTDKM ERKGPDIINSMDPVALKELIIGVEEIALMRGGIKEAAREEQVTIDFAFATVVAIKDIKKG EKFTMDNLWVKRPGTGPIKAEFFNDILDKRASMDICVDKHISWDDIDD >gi|197325097|gb|DS990369.1| GENE 128 132795 - 134135 1013 446 aa, chain - ## HITS:1 COG:AF1772 KEGG:ns NR:ns ## COG: AF1772 COG0318 # Protein_GI_number: 11499361 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Archaeoglobus fulgidus # 128 446 218 557 569 97 26.0 5e-20 MDKFKNAFLNKIFCENQEQYVLVYEEQRYTYDDLCNNVINKINLLTNLGEINTIGIIGDY DFESISLFLACIELNKIIVPFINENEISNKLTEVNCDIILKGDEYQIQQKNHKNHDLIQK LINENKPGLILFSSGSTGVPKAVVHNFEAIIDLHITKQYNPTKTLGIFLPDHIAGIDVML SVLGTGGSLVIPKSRKPKDVLEAMQRYKVEILPASPTLLRLLTLSEMEKCDLDSLKLIVY GSERMDSNLLQFLQKILPNVRCKQSFGTSETNAIKTRDHDTKEGYFKIMNCSYKILNNEL YLKSKTQALGYLNADNSVFDDEGYFATGDLVEVIHKNNEEYIKIIGRNKEVINVGGEKVL PQEVEGVLMQIPFIQDCLVYGQSNPLTGQSVRVKIVLQKNENLDALEAKKKIRMFCRDKL TSYKIPTKVEIVQKLEISERFKKVRR >gi|197325097|gb|DS990369.1| GENE 129 134128 - 134763 446 211 aa, chain - ## HITS:1 COG:AGl561 KEGG:ns NR:ns ## COG: AGl561 COG1028 # Protein_GI_number: 15890393 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 15 208 55 248 253 117 33.0 1e-26 MVCGCSRGEASIIHGNYRHFCLDVNDEKAVASMVRNVKKEFGCIDILLNNAGIASMNHIL TTPYKTIQNIFNTNVFGSFLFIREVAKVMVQNFKKTKTQKRIVNFATVATPLRLEGEAVY AASKAAIVSFTQVLAKELSEFNITVNAVGPTPVPTDLIKNVPKEKMQALLNQQAIKRFGE FKDVLNVVDFFIDEKSDFITGQIVYLGGVNG >gi|197325097|gb|DS990369.1| GENE 130 134844 - 135140 454 98 aa, chain - ## HITS:1 COG:no KEGG:HH0093 NR:ns ## KEGG: HH0093 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 98 1 97 97 105 66.0 5e-22 MERQIQEIIIEILRSLADELENDNLKNPSLETKIYGIEGNLDSLALVSFIADLESELSEK LNIDMVLADEKAMSMRNSPFKDVESLANYITKKLQEQE >gi|197325097|gb|DS990369.1| GENE 131 135167 - 136183 757 338 aa, chain - ## HITS:1 COG:no KEGG:CJE1501 NR:ns ## KEGG: CJE1501 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_RM1221 # Pathway: not_defined # 4 336 3 332 332 233 40.0 1e-59 MSEYDIRYCKIDEVGKLVEFLRKHWKEDHVFVCNRKVLDFQHLDEENQRYNFLVAHNIKT GQFDAILGFIPTNKFDCKLETQDVWLAIWKVKKQYAKTGIGLQLLMEIMRIYKNGSVGIM GASEDAIKIYKALKYMMGELNHYYIANFNIKTQLAYFKNRHERNIQNIQNRYCIKKISKE CLIDSALEYKFKPYKSIEYFINRYHNAEFYDYNFYGIYEDNLILAAFVAKIIEIKGANCM RIVDWIGEFVGDIYYPIQQLLKKDNLEYIDLVCLVPKRNHEILNMGFTLKDKNDVVPNYF EPFIKKNVIITVAWKSNDNGYAFFKGDSDQERPNFLKD >gi|197325097|gb|DS990369.1| GENE 132 136230 - 137180 535 316 aa, chain - ## HITS:1 COG:no KEGG:C8J_1335 NR:ns ## KEGG: C8J_1335 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_81116 # Pathway: not_defined # 1 314 1 315 315 334 56.0 3e-90 MKAIMYHYVREGSHQLPFFRYLSIENFCRQLDYFEQQYGFVKMEDIVNCFILKKDNSYQT IHNKVLLTFDDGVIDHYSYVYPELLKRGIVGLFFVSTGVFDSNKALDVHRIHYCLGRMGG GACMRLLNKIITDDMLEYDYDIKSNIYTKQKNDEATKEFKSVMNYFLKYEYREAVLDLIV KEIGIADQDLFKELYMSMDNMQEMQKNGMIFGSHSVKHCVMSKLSRDEQEKEIRNSFLFL ERNLDMRKLKIFCYPYGGFHTFNEDTYEALKENNAMFAFNVESRDIEYKDILQNPYTLPR YDCNEFEFGQASLGVC >gi|197325097|gb|DS990369.1| GENE 133 137234 - 139465 1295 743 aa, chain - ## HITS:1 COG:no KEGG:NMC0051 NR:ns ## KEGG: NMC0051 # Name: not_defined # Def: alpha-2,9-polysialyltransferase (EC:2.4.99.-) # Organism: N.meningitidis_FAM18 # Pathway: not_defined # 17 483 13 462 492 174 28.0 1e-41 MLEVARKKLSGLMQDIKEYFVSSEYEMMFYKKELNQCNNVFYISNLGQLKQVETLIEFEE LSNNCLVIGYTRANLEMPDFILDKADKRKFQNIILVELVVSVNYLKPGRIKQICRIYKKL SQNIETKELYLLSVEGHYGIFAHYMKQKGVLINLLEEGTATYKFELKNGKIHVNAPAVRM GRYTEIFCTLSGIKNMLLVGEFNKIYAAFPEKLRGIFKANEIILFFAHINIKPSANLVEI IEKYKITGDDIIFVSQRFDIDLNIFIEKILDILEAYVVAYRQRVFVKHHPKESEKQISLF RSKIIARGFSQNIISVSDKAFLVENILDIVETKILVGLTSTSLIYAQKLNKDIVVHSVVP WFLKKVFFLEKQKKQMLSSHFNELQKTFDGFKIIEDAGAIVAGDICSDTPKNSDATALID KANQGFVEKKILQAIFYYKQSESKDIFLRMPHILYNMLYCWDALENDFQKYRIIIKYLQL DVVLEKKEEEFVFAKLMQFVDMCLREGKFEKFEKIEQLALAKQEKFLYFDVGVIRLKKML YLERWDDVLRAFEDLRESSKKRYFIVFEIVRSFIREENMEFEEELKEIDDRVVGESLKLL YLYSCKKYSDIYDYIVEIKDANPYLYQQYHNKIIIQKKYSTLIESFNVDNILEYMINNEK KQFFAEVSDVLSKYNVEYRIGDIIEALNGDQIKLKTQDMEDLICALKGFEGLAEFCKRED DMGLICRILTFEFAGNLLENERS >gi|197325097|gb|DS990369.1| GENE 134 139576 - 139839 239 87 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|313142173|ref|ZP_07804366.1| ## NR: gi|313142173|ref|ZP_07804366.1| predicted protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 87 139 225 225 153 100.0 5e-36 MAVDNANVRLYKNEEFLDILKNKLSNSVKEAEQLKKMLSEKDRIISHMQTELELDHKKTI KEFAGELWILIISLFKKVKILKKGRCG >gi|197325097|gb|DS990369.1| GENE 135 140166 - 140783 323 205 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418649|ref|ZP_03656655.1| ## NR: gi|224418649|ref|ZP_03656655.1| hypothetical protein HcanM9_05167 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 205 1 205 205 395 100.0 1e-108 MDRIDYSANKIVLQESEKYIENYQNMSKKTAEDIFAYRNSLDMLGRGLEVYEQLYFYDFK SFSEHKCLTITFHPHPRKFLLSSQRFFGDVLYMSTRGNTTYYLYGVDYFVKMVLDLIRIK KYKHICLIGSSKGASGALVLGKRLKEAVVRNRLRSRITVTAFSPMVDLRVSDKTPPSCKT LEYLSEANYFYKYFFALGGGGVKGV >gi|197325097|gb|DS990369.1| GENE 136 140916 - 142907 1444 663 aa, chain + ## HITS:1 COG:Cj1414c KEGG:ns NR:ns ## COG: Cj1414c COG3563 # Protein_GI_number: 15792732 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsule polysaccharide export protein # Organism: Campylobacter jejuni # 5 663 35 689 689 644 50.0 0 MGQRFLGWGRKKSGRNALFLAEKFGGSYLLLEDGFIRSFGLGIEDSPSFSIVQDNLGIYY DSTTKSQLENILNTYDFNTDSTLLKTAKEAIHLITTHHISKYNHAPDVPQNYFTPTDSTP KRILIISQTQNDSSLIYGNANAFTTAQIIQDALTENPTCEIYLKIHPDVLSGRKKSDFNP SEIPAQIKLIYEDFNPISLLKHFKKVYTKTSQMGFEALLVGCECVCYGMPFYAGWGLTID KQTCPRRKRKLKLEEVFAASYILYSHYYNPFYQRKSDILDTLQTLIRYKHYYIKTHKKAF MFGFSTWKHTFIPPFMPNFNPKNIIFINPLFSSHLKSVFKKGLLQEALKQNCEIFIWGRK SFNEIENFAKEHSIPLTRIEDGFIRSISLGSDLTRPFSQVFDASGIYFDATTQSDLETIL NHTTFNQTLLEEAKILKDKILTSKISKYNTNPHKSLNLPPNQLKILIPGQVEDDASIIYG ANGRTNLSLLKEVREKNPKAYILYKPHPDVLSGNRIGNIPSSVALQYCDEILIDISLPSC LEAVDEVHTLTSLSGFEALLYGKRVVTYGMPFYAGWGLTTDQQTCPRRTRKLTLNELIAG AYILYPRYIHPKTLQLCHPIALIDALEEEKQKLQNNRFYALKKRLYFLLSRKAQRLLHFL TIK >gi|197325097|gb|DS990369.1| GENE 137 142893 - 143975 1025 360 aa, chain - ## HITS:1 COG:Cj1351 KEGG:ns NR:ns ## COG: Cj1351 COG2829 # Protein_GI_number: 15792674 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane phospholipase A # Organism: Campylobacter jejuni # 72 359 49 328 329 169 37.0 6e-42 MRQILFLAWVSIFAFGAEFGGIGDLEFLPQKNLKILVLDEKMQVKKVLNFDSKESKHITL EVEKDEKIYLTIISKDSNQTKKQATENQDKSKLAKALKEEGTMANVSPNIEKSAYEGRFE RNRFMGGILGFEPDGFNYILPANVSTSKEPNQGKQTETKFQISIKKRLYNDLVFKDLDLY FAYTQQSFWQLYDSENSKPFRESNYAPSLYLSYPLKAYDLFFERVNFGYLHQSNGGDLEH SRSWDRIFIEGIYSYENFALSLKAWYRIPEDPNRDDNRDITKYLGYGELSVGYAWKKHLV SATLRNNLRSDNRGSILLDYSYPIYKNLYFYLQFFNGYGESLRDYNNSINRIGAGILFNR >gi|197325097|gb|DS990369.1| GENE 138 144111 - 144875 687 254 aa, chain + ## HITS:1 COG:Cj1448c KEGG:ns NR:ns ## COG: Cj1448c COG1682 # Protein_GI_number: 15792765 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Campylobacter jejuni # 1 254 1 258 260 175 45.0 6e-44 MRDVIEALFFRELKTRFGKNRRLGYFWVIGEPMTHILFFLVIFTLIRARSIPQVPIEMFL VTGFVPFFMFRNIVTQIMAGVQANRALIAYKPVKPIHIFIARALLEMGIYFSVFILFMVV FGWFLDLPILPIHFLEVFVAFLGLAFLGFSLGVCLAFLNSELEYAQIFINYGINILYFGS AVLYPLWIIPDHIVEFLLYNPVLQFLELLRENYFDGYPKIEGINFTYPFSFGIILLFIGL WFYYFRYKYLGQIR >gi|197325097|gb|DS990369.1| GENE 139 144872 - 145531 857 219 aa, chain + ## HITS:1 COG:Cj1447c KEGG:ns NR:ns ## COG: Cj1447c COG1134 # Protein_GI_number: 15792764 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate transport system, ATPase component # Organism: Campylobacter jejuni # 1 219 1 219 220 332 70.0 2e-91 MIQLKNLTKSYPLNSGKRHYVFKDLNFTFPDNCSIGLMGRNGAGKSTLMRILGGMDMPDR GKVITDQKISFPIGLGAFFQGTLTARDNIKFLTRVYGYRGEALKEKIAFVEEFAELGKFF DEPVNVLSSGMRARVSFGMSMAFDFDYYLIDEAGAVGDPTFKKKSTKLYQEKLSKSKVIL VSHSLSEIRKWCDKIIHLDNGVVTIYDDVEEGIKAYQGK >gi|197325097|gb|DS990369.1| GENE 140 145532 - 146659 1117 375 aa, chain + ## HITS:1 COG:Cj1445c KEGG:ns NR:ns ## COG: Cj1445c COG3524 # Protein_GI_number: 15792763 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsule polysaccharide export protein # Organism: Campylobacter jejuni # 1 375 1 372 372 348 56.0 7e-96 MEKLKILFQKPKAQKISTYLKSFKIVYILMIPVILYYLFFAADRYVSSIILSVRSMSNDI SPVSGLASLVGINAGAREDVLFLQEYIHSLDMLKILDKEVHLKLLYQAQKKDPFFALGQQ SSQEDFLKFYQNRVKIIFDDVSGLLKVEVEGFTPQDSEMIANAILKESERFVNEVSHKAA REQMAFAEKELLKAKERLQNAKNNLLAFQARYGVFDPLKQAEAKASLTNTIESQISTKET ELATMRSYLNEDAPQIVMLKSEIDALKEQLDKETSKIVSTKSSKRLNDLAAKFQDLTIEA QFAQDAYTVALTSIETTRIESSRKIKQLVVIQGANKPESPTYPRTLYNIITIFVILSVIY GIIKLITMIIEEHRY >gi|197325097|gb|DS990369.1| GENE 141 146659 - 147594 852 311 aa, chain + ## HITS:1 COG:Cj1444c KEGG:ns NR:ns ## COG: Cj1444c COG1596 # Protein_GI_number: 15792762 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein involved in polysaccharide export # Organism: Campylobacter jejuni # 8 307 4 299 552 353 60.0 3e-97 MKRLFQILLITIFTAHFTYGVDISSITSIPSTSATQNIPMDLQTINPNTTPNTSIQTMQT TQTPILPPVFGANLFNGNFTKVSQSLYNPDYKIAIGDKINFRMWGAVEFQQELMVDSQGN VFVPGVGAINLLGVRNGDLVKVLKQGISKIYKKNVFVYADMNVYQNVSVFVTGSVNKPGL YQGLSSDSIIQYLDKASGINLDYGSFRNIEILRDNKVALQVDLYDFLFSGKMKLFPFRTG DVILVKNLESYVFVQGDVQKPFRFELKDDIKTLEDLARVSGAKPIVTNAIVRSYLANNKI DINSYKQKLAS >gi|197325097|gb|DS990369.1| GENE 142 147751 - 148437 918 228 aa, chain + ## HITS:1 COG:Cj1444c KEGG:ns NR:ns ## COG: Cj1444c COG1596 # Protein_GI_number: 15792762 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein involved in polysaccharide export # Organism: Campylobacter jejuni # 1 226 335 552 552 258 60.0 5e-69 MHSMVVKKGTTLAEVVLKIKPNPQSNLDAIQVFRQSVSQTQKKLIEAQLKELETLALTSS SVTAQEASMRASQSKMVLEFIERAKSLTPKGQIVLENKSAYTTTILEEGDVINVPTKNNL VLVQGEVALPGAFIYEEDKNLNYYIKLAGDFTERANKKRILVIRANGKAERYDSSWYSFA SAPSLKPGDSLLVLPAIETGRGLQITSVLAQILYQIAIATSVVLDINK >gi|197325097|gb|DS990369.1| GENE 143 148445 - 149620 1102 391 aa, chain + ## HITS:1 COG:Cj1413c KEGG:ns NR:ns ## COG: Cj1413c COG3562 # Protein_GI_number: 15792731 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsule polysaccharide export protein # Organism: Campylobacter jejuni # 5 387 6 387 394 363 50.0 1e-100 MQLKEVIQQFQNRKILLLQGPVGPFFYHFSKLLSPKNQIYKINFNGGDFLFYPFGAKSYR GSLANLETFLQEFCKTYHIDCVIMFNDCRPIHKIAVKVARSLNLQTYIFEEGYIRPNFIT FEKDGVNANSTLSKDPNFYLTYKNKPIQEEKNVKHSFRNMAWFAFLYWFGAFLLGWYFNN KLHHRSLSFTEMFPWFLSLFRKHWYRFSQKEDRDFILDSKKNYFVVVLQVYNDTQIKNHF EGRRIESFIKNSIRSFAKYSKKQHFLVIKHHPMDRGYKNYKKFIKRQTRKYNVNQRVIYI HDIHLPTLLKNALGCVVINSTTGLSSILHKCPTKVCGNAFYNIQGLTYQESLNKFWKAAK KYKINQTLFERFRSFLIDKVQINRSFYGKLS >gi|197325097|gb|DS990369.1| GENE 144 149621 - 150628 855 335 aa, chain - ## HITS:1 COG:Cj1131c KEGG:ns NR:ns ## COG: Cj1131c COG1087 # Protein_GI_number: 15792456 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Campylobacter jejuni # 5 333 4 327 328 373 57.0 1e-103 MQTYLFTGAAGFIGSHTAYCFLKESDCKIVILDNLCTGFSENVEFLQKKFPNRVEFVSGD FGDKVILEKIFSQQKIDAIIHFAGSLVVSESVFDPLKYYQNNVANTLNLLEMVAKFKINE FLFSSTAAVYGEPNTTQKIIETTQTAPINPYGESKLVVEKILRDFEVANPEFKSVILRYF NVAGALSEGGLGQRSKNATHLIKVACECACGKRDKMGIFGEDYATKDGTCIRDYIHIDDL AKAHFECLKTLQKERVSQTYNVGYGVGFSVKEVIECVKRVSGIDFKVEIEPRRAGDPAML VSDNSKILTRTEWKPKYNNLELICKSAYEWERKMD >gi|197325097|gb|DS990369.1| GENE 145 150638 - 150991 266 117 aa, chain - ## HITS:1 COG:no KEGG:Cla_0323 NR:ns ## KEGG: Cla_0323 # Name: not_defined # Def: hypothetical protein # Organism: C.lari # Pathway: not_defined # 1 117 1 117 117 200 78.0 2e-50 MKEKLAGTLLLCALVPLMVIGYLLIVFVGTFGKVSRVRQGVRALDHFVNATLFNGYAWES VSSHAWRERDKKWAKIVIKITDFFQKDHCKRANSREQPIIDLMLRKHLNEQTIGRQL >gi|197325097|gb|DS990369.1| GENE 146 150998 - 151291 229 97 aa, chain - ## HITS:1 COG:Cj1411c KEGG:ns NR:ns ## COG: Cj1411c COG2124 # Protein_GI_number: 15792729 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Cytochrome P450 # Organism: Campylobacter jejuni # 1 96 357 452 453 167 78.0 4e-42 MAPWLIQRHSDYWENPHEFDPTRFEREIKKDTYLPFGMGERICIGQGFAMQEAILILANI LREYKLELQEDFVPDVVGRLTIRSANGMKIKFTKREN >gi|197325097|gb|DS990369.1| GENE 147 151371 - 152411 976 346 aa, chain - ## HITS:1 COG:Cj1411c KEGG:ns NR:ns ## COG: Cj1411c COG2124 # Protein_GI_number: 15792729 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Cytochrome P450 # Organism: Campylobacter jejuni # 1 345 1 342 453 499 71.0 1e-141 MGQCPFFPKPHKTKASLLTTFFLKRRSWLDGLYERSYKMKSGRVKMPGFDLYIANHPKDV RRIMVDEVREFPKSDLLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEQARISKVFGLM SDAVSDLMSKFRAYPNKAVIEVDELMTFVTADVIFRTIMSQKLDEVKGKQVLEAFVVFQE ETIHTAIKKMFRIPKWLVNLFGERKRVKAGALIRKILSDIIKPRYDSFHKGEIGEYQDIL SSLLAVVEVESGKPFSFEEILDQVAMLFLAGHETTASSLTWTLYILSISPREQEMAYQEI IKVAGEENFSIGHLRKMKYLTNVFRESLRLYPPVGFFARTAKKETN >gi|197325097|gb|DS990369.1| GENE 148 152414 - 153541 703 375 aa, chain - ## HITS:1 COG:no KEGG:Cla_0321 NR:ns ## KEGG: Cla_0321 # Name: not_defined # Def: hypothetical protein # Organism: C.lari # Pathway: not_defined # 3 374 7 376 376 275 41.0 3e-72 MFQRNVFYIAGYDPRSYRYYYALLKDNLIKQNAISHLGLEISPCQFTHKKEIFCQITSQE SQTNYYFLTWDKVVRKYWSKTLWDFICDFICFLRAYIFSGIVKTFTQKSRTQLLAGFYPI VYFVSSYILCFVVAYGLFIWIKEWNLYAAMAAILACLWVGTKGILWFGKRFAVFWLSNIY AFCAKYAAGKINEIPSLTLDFSQRILKTLRENQKITHCETILCAHSVGTILAVSVIAKVV EVAKKENLNLKNFKVLMLGQCIPLVSFQKHCEVFKKEMEIAGNAGVFWCDYTSKIDGACF AMLDYYKASGLSVKSPPLYLSPRFYKLFTPKTYKKIRYNWYLAHFLYLYATEIGGGYNYF EFISGEKTLEQKVKE >gi|197325097|gb|DS990369.1| GENE 149 153908 - 154084 92 58 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418663|ref|ZP_03656669.1| ## NR: gi|224418663|ref|ZP_03656669.1| hypothetical protein HcanM9_05237 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0139 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0139 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 58 1 58 58 75 100.0 2e-12 MLIIVILFCSFIWLFLAEAEEWVRCKEPPFCPVIFFVRFICGFVVIAGIIKLIIGAFS >gi|197325097|gb|DS990369.1| GENE 150 154094 - 154285 230 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418664|ref|ZP_03656670.1| ## NR: gi|224418664|ref|ZP_03656670.1| hypothetical protein HcanM9_05242 [Helicobacter canadensis MIT 98-5491] # 1 63 1 63 63 80 100.0 6e-14 MLLIIGVVSGIVYLVTRDICYDMGVTGYWMLPNSHVGLIFLINRFFKWVAIISIIVFIFQ LIF >gi|197325097|gb|DS990369.1| GENE 151 154305 - 154670 459 121 aa, chain - ## HITS:1 COG:no KEGG:CV_3864 NR:ns ## KEGG: CV_3864 # Name: not_defined # Def: hypothetical protein # Organism: C.violaceum # Pathway: not_defined # 29 121 21 107 107 67 36.0 2e-10 MFCVFGNILKTFAFIMLFANYCFAEVREDICVQYEIRESFNSGWSKKYKVEGIFYDGSEL NFKLGTLEFNSFDSYLAVFWDRDEVSLIQLESKYYGSIIGDNYGIDQRGIKWKISDGYMC Y >gi|197325097|gb|DS990369.1| GENE 152 154773 - 155033 279 86 aa, chain + ## HITS:1 COG:no KEGG:CFF8240_1425 NR:ns ## KEGG: CFF8240_1425 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: C.fetus # Pathway: not_defined # 1 82 1 82 83 111 68.0 9e-24 MLKLPDITAPEEEKNFFNNIAKNIKQKRLEKGMSQLEVALSIGQASGGFYANMENNAHGK HFNLLHLFRLSRLFECDIREFFTIST >gi|197325097|gb|DS990369.1| GENE 153 155088 - 156974 2505 628 aa, chain - ## HITS:1 COG:jhp0196 KEGG:ns NR:ns ## COG: jhp0196 COG0326 # Protein_GI_number: 15611266 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone, HSP90 family # Organism: Helicobacter pylori J99 # 3 628 5 621 621 749 65.0 0 MAKHTFQTEVNQLLDLMIHSLYSNKEIFLRELVSNASDALDKLQYLTLTDEKLKSLDFQP KIEISFDAEKNTLTISDNGIGMNEQDLIENLGTIAKSGTKNFLSKLSGDKKKDSALIGQF GVGFYAAFMVASKIIVTTKKAGESQAYAWISNGSGEFEIEKCEKEGQGSEIKLYLKEDEK EFTSRWRIEEIIKKYSDHIPFPIFLHYTETKSEGGGDSKKEVKEEKCEQINKASALWRVA KKDLKDEEYKEFYKSLSYDSNEPLAWIHTKVEGSLEYTTLFYIPQTAPFDLYRVDYKSGV KLYVKRVFITDDDKELLPPYLRFVRGIIDSEDLPLNVSREILQQNRILATIKSASTKKII SEIESLQKDEEKYTKFYKEFGRCLKEGVYSDFENKEKLLELLRFQSNKSEGKEISFKTYK ERMKEGQKAIYYLQGEDLELLKNSPLLESYKKQDIEVLFFAEEIDGFVMPMVSEFDKTPL RSITSKEALEDLGTQEVDKETQEKYKTILEEFTKVLSDEVKEVRLSNRLVDAPSCVVADP DDPNAAMMKMMKQMGAMGMGGDIPEPKPILELNPNHVILTKLLLSNDEAKTAEIAHLLLE EAKLLEGGKLKDVNSFVKRLNTLLEKTL >gi|197325097|gb|DS990369.1| GENE 154 157329 - 160154 3296 941 aa, chain + ## HITS:1 COG:Cj0342c KEGG:ns NR:ns ## COG: Cj0342c COG0178 # Protein_GI_number: 15791710 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Campylobacter jejuni # 10 939 3 935 941 1362 72.0 0 MNPQNPSPLDHIIITNAKENNLKNIHLNIPKNKLVVLTGLSGSGKSTLAFDTLYAEGQRR YIESLSSYARQFLDKIGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLY ARVGIQHCHLCGKPISQMSASDIIAQALKIPEDSKVLILSPLIREKKGTFADKLESLRQK GYVRVQIDGVLARLDENIELSKTKKHTIKVVIDRITIKPENKERIAQSIEKALKESYGEV EIEILGENKNQLIHFSEHLACFDCKVSFNPLEPLSFSFNSPKGACPKCDGLGIRYSIDVK KILDSSLPLESGGIKIIYGFNKSYYNELFKAMCQANGIDSKASFEDLQEHQKKLILYGNN QDIEFTWKNTKLKRPWSGILAIAYDMFKDNKDLSDYMSEKVCEDCLGHRLLPQSLAVKVA NKTIGDILDMPISECYGFFANTQNFDYFDNQQAMIAAPILKEICERLYFLYDVGLGYLSL GRDARSISGGESQRIRIASQIGSGLTGVMYVLDEPSIGLHERDTLKLIKTLRSLQQKGNS VIVVEHDKETIEHADFIVDIGPGAGKYGGEVVFSGNLTQLLSSATQTAQYLNGTKKIEYF IRRNQEDWLAIKNVNINNIHNLNVEMPLKNFVCITGVSGSGKSSLVLQTLLPVAQELLNN RKKVKKVDGVEILGLEKLDKVIYLDQSPIGRTPRSNPVTYTGAMDEIRQIFAQTKEAQIR NYNISRFSFNVKGGRCEKCQGEGEIKIEMHFLPDILVKCDSCQGTRYNAQTLEVEYKGKN IAQVLEMSVDEACEFFAKIPKIYQKLRTLKDVGLGYITLGQNATTLSGGEAQRIKLAKEL SRKDTGKTLYILDEPTTGLHFADVDRLVHVLHHLTDLGNSVIVIEHNLDMIKNADFIIDV GPEGGSGGGNIVDSGSPEHIAKRYKKTGSHTGKFLAKELGI >gi|197325097|gb|DS990369.1| GENE 155 160189 - 160296 115 35 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418669|ref|ZP_03656675.1| ## NR: gi|224418669|ref|ZP_03656675.1| hypothetical protein HcanM9_05267 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 35 1 35 35 66 100.0 5e-10 MKKIFFLMGVIFVAFLATGCDKSDYQHPMHRSGGK >gi|197325097|gb|DS990369.1| GENE 156 160306 - 162516 1904 736 aa, chain - ## HITS:1 COG:Cj1052c KEGG:ns NR:ns ## COG: Cj1052c COG1193 # Protein_GI_number: 15792379 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Campylobacter jejuni # 4 736 9 736 736 606 46.0 1e-173 MNNLVRKLDLEEYLKSYESFLSRPKDLFLEGDSKIHFNFISELEQVVFTPPKEVKNLDTQ LVLLKKFGYLKLDEIFEFIKIIRYFNYLKSLKLEGILGNWFEGIMIPQPILEVAKSFLEN GELKSGIYLEFDSIIESLMRVKREIAQQLNQILNHNKLAAYLVDRQMHFINEEECLLLKA GFHHVLSGQIINRSSAGFFYVLPQSIASLKSKSNELQNKKEEQLFYICKEISTLFTKNLA FLKFINKEFDRFDSYQARLNFAKSKGLEFLAPKPNGKKIILSEFKHPALKKPKSINLSFD GQILMVTGVNAGGKTMLLKSVMSAVFLSKYLIPLPINAAKSSIDSFKFIELILEDPQNSK NDISTFGGRMLQFSEILNQRDGIIGVDEIELGTDSDEAASLFKVLLENLISKNNKIIVTT HHKRLAALMAGNPKVQLLAALFDEKNQMPTFSFLDGTIGKSYAFETAVRYGIPKTLVNEA RILYGEDKEKLNELIENSSRLEMKLQQEIKQTELKREELKQKIIHLKSKEETLEQSYKAK IALLERTYQEAIKTAKQASKMQNQAEIHRQMNEANKILRQVKKQEEHREKPKIQAFKVGN RVKYHQSRGVIVSIKKDSAMVQLDEGFKLRVPLGELKLSGNPPEIPQVKFNVQSPKNANV VLDLHGMRAEEALEKLDEFISNSLIVGFDEVLVYHGIGTGRLSSVVRDFLEKHPKVVEFT DAPPKSGGFGAKIVKL >gi|197325097|gb|DS990369.1| GENE 157 162513 - 162875 235 120 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418671|ref|ZP_03656677.1| ## NR: gi|224418671|ref|ZP_03656677.1| hypothetical protein HcanM9_05277 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0133 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0133 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 120 2 121 121 174 99.0 2e-42 MHYWLIVIAVVVILVLLVQLLAQYKIISKKGKIFVGILLLILAFGIGIFTLFQEKTNGEL TELAKLFLQGKKLVCVVGTKTLEVDNNTFNFISGTLTLMGKEESDHFRTTIPLKACELKE >gi|197325097|gb|DS990369.1| GENE 158 162878 - 164212 1190 444 aa, chain - ## HITS:1 COG:jhp0567 KEGG:ns NR:ns ## COG: jhp0567 COG0773 # Protein_GI_number: 15611634 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Helicobacter pylori J99 # 3 442 2 447 449 453 56.0 1e-127 MALEIPKSIHFIGIGGIGISALAKFLHAQGVKVSGSDMCEGCVTKELKAMGIPICIPHAK ESINCQDLVIHSAIIKPDNIEVMEAKKKGIAVLSRKEALSLILKDKQVYAVAGAHGKSTT TAILSAILQESSALIGAESKEFGSNTRALKTNKVVFEADESDKSFLECNPYCAIVTNAEP EHMETYGHNLEVFYQAYRDFLELAKYRVINAEDEFLKTLQCECVRLYPSKDIENIEYFLK DGEPKTRFRLKNSGKDLGVFEVYGLGEHIALDAALAILAALECMEVEQIRQNIQNFCGIK KRFDILSKGKCLIVDDYAHHPTEIKATLKSLKKYQELTQYQQICGIWQPHKYSRILDNLE EFVECFSGIDRLVILPVYAVGEAKKEINFSKLFAKYQPTFADFVKREGDSLVLYCNGVEI DRIESGIAVGFNAGDLTYQLRGGF >gi|197325097|gb|DS990369.1| GENE 159 164203 - 164430 121 75 aa, chain - ## HITS:1 COG:NMA1113 KEGG:ns NR:ns ## COG: NMA1113 COG0436 # Protein_GI_number: 15794060 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Neisseria meningitidis Z2491 # 3 60 319 379 395 72 61.0 2e-13 MGVEVPNTTFYVWLFVGDDLEFTRNLLQKENIAVLPGSFLSRENGVNPGSGYVRLALVYD QEIIKDALLRIKKWL >gi|197325097|gb|DS990369.1| GENE 160 164657 - 165541 954 294 aa, chain - ## HITS:1 COG:HP0624 KEGG:ns NR:ns ## COG: HP0624 COG0436 # Protein_GI_number: 15645248 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Helicobacter pylori 26695 # 1 292 1 292 375 337 59.0 1e-92 MEFQPYPFEKLNALIKDIPQKEGRILLTIGEPQFKTPEFICQTLSQKAALLNKYPKTSGE ESLKEALLGFVQRRFGIDLPLESLIPTFGTREVLFNFPQFYLFGKKNKVMAYPNPFYQIY EGAAIASRAKVIHMNLTKENDFKPKLSAKEMQECDLVILNSPNNPTGSTLSLEELKKWVE WALEYDFLLLNDECYSEIYVDSKPASILEASYAAGNYSFKNILALNSISKRSSAPGLRSG FIAGDSQILKQYAQYRTYVGCASPLPLQEAARAAWSDDEHTLYSREQYAKNLAS >gi|197325097|gb|DS990369.1| GENE 161 165545 - 167062 1870 505 aa, chain - ## HITS:1 COG:HP0247 KEGG:ns NR:ns ## COG: HP0247 COG0513 # Protein_GI_number: 15644875 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Helicobacter pylori 26695 # 11 505 22 492 492 495 54.0 1e-139 MEKMKKISSGFAEFGLKSKVLKGIDEAGFKEPSPIQKEVIPVILDGLDVIAQAQTGTGKT AAFALPLINELRHDGSIEVLIVAPTRELVMQIGDEVFKLGKYNKVRTVSLFGGQPIRRQI ELLEKKPQIVIATPGRLLDHLRNGRLKDFDPRVVVLDESDEMLDMGFLDDIEEIFTYLSS DRQTLLFSATMPTPIKHLAQKILHNPKLIKVTPSDTTNQDISQRYYIINEQEREDAIVRL IDSEMPSKAIIFTRMKKEADLLCERLVNRGYKAGALHGDMEQRERQKSIKAFKDSSINVL VATDIAARGLDISGVSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEFKELRR IKENTKAKIELYEIPDLQDTINKKDSNLLENILKHEITDEALKFYEQIRANADITQLVCK LLSMVLKENKIVGPNKIGLDKEDLNRFQKQLQSDEKKHSEKKGSRLSRNSSNKRNFKEKE SPKNQGRRTSAKSKKNSKPTRSKRR >gi|197325097|gb|DS990369.1| GENE 162 167122 - 167628 427 168 aa, chain - ## HITS:1 COG:jhp1267 KEGG:ns NR:ns ## COG: jhp1267 COG0204 # Protein_GI_number: 15612332 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Helicobacter pylori J99 # 1 164 72 237 237 169 51.0 2e-42 MNHQSFMDVIYLEAMHPNNLCWIAKKELGKPFLYGHALKAPKMILIDRESKKEMVHLLKE AKDRLQNGRTLCIFPEGTRSLGGEKLLPFKSGAKVLTEHFGLKVQPVVFCGTRKCLDIGA MHFSNEAFMVKYLPSFVPEGEDWFVELKEKMQKEYTNLYSQLFAVSNS >gi|197325097|gb|DS990369.1| GENE 163 167807 - 169042 996 411 aa, chain - ## HITS:1 COG:no KEGG:WS0604 NR:ns ## KEGG: WS0604 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 51 410 25 388 390 252 39.0 2e-65 MFPQDSNTYNQRTQNQNSPQNFLPATPAPIEKNQIPLVQEKDLKDPFEKSLPQEDLATLQ NSDSNQAPNSIQENYQSALKPKNVYLSFVSPLQNVLYVKQIIPIEVKLLIFGEYSTITTD FITKDSSVSVLNPEENWILNQDSSLKNTFYFRIEQANFTIPKIEVTIQTSEGKVRESTES ITSRAVALERKGNYSQVVADDLKIIDTKITSYDSQSNLAVFQLQSTMGNLFDFHLETYAQ QGIESKKGDYKESEIFYYAVVPKSLDKISFDYFNVQSAKYVELQIDNFSQDDRVSTQSDI RPKNTLQIYKILAAIFLIIVFLGLYLYYRKKLFLILGAIVLVVLLYLLSIKTSATLKSNV EIRIQPTFNSTIILTTQNPMEVKILSDKHGYYKILLEDDRIGWVRKDGIQN >gi|197325097|gb|DS990369.1| GENE 164 169096 - 169755 748 219 aa, chain - ## HITS:1 COG:Cj0514 KEGG:ns NR:ns ## COG: Cj0514 COG0047 # Protein_GI_number: 15791876 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain # Organism: Campylobacter jejuni # 1 216 1 214 223 279 63.0 3e-75 MSVAILQFLGTNCEYDMQYAFSLLKVPTQIVWHQETNLPSGTKLVVIPGGFSYGDYLRSG AIARFAPIMKAVVEFAKKGGYVLGICNGFQILLESGLLPGAMKRNENLHFASKEVCLRVV NNNNTFLKNFNKEDLLQVPIANADGNYYIDEAGLRILEQKEQILLEYVGYHNGSVRNIAG ICNEQKNVFGLMPHPERCVEKILGGDVGLKMLEGFLEIL >gi|197325097|gb|DS990369.1| GENE 165 169769 - 170005 414 78 aa, chain - ## HITS:1 COG:BMEI1123 KEGG:ns NR:ns ## COG: BMEI1123 COG1828 # Protein_GI_number: 17987406 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component # Organism: Brucella melitensis # 1 78 2 79 80 84 60.0 4e-17 MKAEVIVSLKEGVLDPQGKAICHALSSLGYSNVKNANVGKVITLEIEGEDKEKIRKEIEA MCESLLANVVIEDYKIKI >gi|197325097|gb|DS990369.1| GENE 166 170015 - 170731 773 238 aa, chain - ## HITS:1 COG:Cj0512 KEGG:ns NR:ns ## COG: Cj0512 COG0152 # Protein_GI_number: 15791874 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Campylobacter jejuni # 5 238 3 236 236 312 69.0 3e-85 MQVEQKEMMYEGKGKKLYKTNDANLVIAEFKDDLTAFNAEKKGSEEGKGSLNCKISTEIF KLLQKNGIKTHYVETLSDNLMLCKKVQIIPIEVVVRNIATGSLSKRLGIKEGEKLPFVLV EFYYKDDALGDPLINDEHALILNCVKSVESLETLRKIGREVNEILREFFDSKNLLLVDFK LEFGVDNEGNILLADEITPDSCRFWDKETKEKLDKDRFRQDLGNVKMAYEEVLKRILS >gi|197325097|gb|DS990369.1| GENE 167 170743 - 172038 1644 431 aa, chain - ## HITS:1 COG:HP1350 KEGG:ns NR:ns ## COG: HP1350 COG0793 # Protein_GI_number: 15645963 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Helicobacter pylori 26695 # 37 430 48 447 459 451 59.0 1e-127 MKITTKSLFQTFLIAMVLSFLSSSVSLAQEKKGEESRLDSYNKLRKVIGTVEQYYVDELT LEQIVDKAIDGLLSNLDAHSAYLNEKKFEELKIQTNGEFGGIGITIALKEGALTIIAPIE GTPGDKAGLKSGDIILKIDNESTLNMSIDEAVNRMRGKPNTKVQLTIVRKNNPKPLVFDI TRDNIKVESVYVRGIENTNYVYVRVTSFDKNVSQRVEEELKKFKKVDGIVLDLRNNPGGL LNQAVELSDLFLEDGVIVSQKGRIEDEDIVYRANKRTPYPKVPLVVLVNNGSASASEIVA GAIQDNKRGVLVGETTFGKGSVQVILPTEEKEALRLTIARYYLPSGRTIQAVGVTPDVEV GPGAVPVDNDRISIKEANLQKHLEGELQKVDGKENKAKKKEDKNTLTQEAILSDIQLKSA IDALKVFKVVK >gi|197325097|gb|DS990369.1| GENE 168 172098 - 174017 2487 639 aa, chain - ## HITS:1 COG:HP0213 KEGG:ns NR:ns ## COG: HP0213 COG0445 # Protein_GI_number: 15644841 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Helicobacter pylori 26695 # 4 625 6 617 621 809 64.0 0 MTYDVIVIGGGHAGIEASIVSAKRGCKTLLLTMLVEQIGAASCNPAVGGLGKGHLVKEVD ALGGVMGYITDKSGIQFRTLNASKGPAVRGTRAQIDMDRYKIIAREICYQTKNLEVSQQI AESLLLENNCIVGVKTNIGKVYHAKKVILTTGTFLRGKIHIGENISNNGRAGEPPAMELG ECLRELGLEVGRLKTGTCARIKASSINFEALEKHYGDMPPPFFSKQTQKELGNKEFSPTQ LPCYVTYTNAKTHEIIRNNFHRAPMFIGQIEGIGPRYCPSIEDKVNRFSDKERHQLFLEP QTLEANEYYINGLTTSLPFDVQEEMIHSIEGLENAEIVRYGYAIEYDYINPTELKHTLET KKIKNLYCAGQINGTTGYEEAAAQGIFAGINASLSVQGKEEITLKRNEAYIGVMIDDLVT KGTKEPYRMFSSRAEYRLLLREGNAIFRLGELAYKLGLMQEEEYQALLQDKSDIQKGLQW LDSTALTPTQEILTFLDSIQEEKISDKTIWRTIVGRRSFDLPKLLKIGEIIPTPFEKFSH RALEEILVEAKYANYIQKQQSLIDNMDKMLSIKIPADFSFDTIPGLSLEVVEKLKKFTPK SLFEASEISGVTPASLEVLQLYIHLYHKKKSLELTRENN >gi|197325097|gb|DS990369.1| GENE 169 174061 - 175146 477 361 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|313142205|ref|ZP_07804398.1| ## NR: gi|313142205|ref|ZP_07804398.1| predicted protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 361 47 407 407 714 100.0 0 MEKYRDSQAFVEAILNRSFDFGAIKRHYLELKKRNIQSDVAYRLAIDKKYPRLNTFAKIF KLGIRNSNTINYFGIPLPIDLNSPDKNFFLKNEIDFEALKQRDKSVKVVLVFGPSTVRES YMEHQEDALVFKIQKKLNNSSNSCIKIMVLNCGFSGFTLYEQFLLYATLFYAVKPEVVIT FFGGVDIFQGGVGCELLVKNHAIFSSIFYEQEFKEKCQSIFPLKHQLLKSDFYQNSPNKE DILVALQTRLKQFYDMVVSNKGIFCPIITPLLAYKQHWSEKEKECYRTTLRDFKNIGYDE TNQERQMLEKFKAMQRDFVIYDGNEATKNSIETLFMDWIHPNARGNEFIAEYVRKLLKGI L >gi|197325097|gb|DS990369.1| GENE 170 175208 - 175414 171 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|313142206|ref|ZP_07804399.1| ## NR: gi|313142206|ref|ZP_07804399.1| predicted protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 68 26 93 93 128 100.0 2e-28 MGCACKVIDDGNLLEREGFISYETLKESLQYDSQAFDAYLIAISGKTEIIQKIKDKLLSI KSVGGGNY >gi|197325097|gb|DS990369.1| GENE 171 175595 - 176347 835 250 aa, chain + ## HITS:1 COG:PM0361 KEGG:ns NR:ns ## COG: PM0361 COG0730 # Protein_GI_number: 15602226 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Pasteurella multocida # 1 249 1 250 254 205 50.0 7e-53 MEFEISTLILLFFAAFLAGFIDSIAGGGGMITLPALLLSGASPLESLATNKLQSSFGSFS ATRHFYKKGYLNLKKCLPFAILVFIFSSLGTISVQFINIDFLSKFLPFLIMIFGFYFLFS PKISEDQRATHFHKAYLFLALAGIGFYDGFFGPGTGSFLMLALIALGGLGITNALAEAKL YNFSTNLASLIFFAIGGNMLFGIGLVMAVGQFIGANLGSRAAIKYGIKIIKPLIVIVSFS MAAKLLYDQF >gi|197325097|gb|DS990369.1| GENE 172 176334 - 176855 415 173 aa, chain + ## HITS:1 COG:Cj1254 KEGG:ns NR:ns ## COG: Cj1254 COG3663 # Protein_GI_number: 15792578 # Func_class: L Replication, recombination and repair # Function: G:T/U mismatch-specific DNA glycosylase # Organism: Campylobacter jejuni # 4 167 2 155 160 129 45.0 4e-30 MTNSKAFYHPFKPIIFQDSKVLILGSFPSITSRQESFYYAHKQNRFWKILENLFDFPLQN KPKEDKVAFLRIHHIALFDIAKICHIRNSSDSTLKMLQPNPIHQLILNTQIQAIFTNGQK ASQLYCQFFCLPHSCHFIPLPHIALPSSSPTNAKYTLPLLLKEWSKILPYLTN >gi|197325097|gb|DS990369.1| GENE 173 176943 - 177350 205 135 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418687|ref|ZP_03656693.1| ## NR: gi|224418687|ref|ZP_03656693.1| hypothetical protein HcanM9_05361 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0120 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0120 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 135 1 135 135 211 100.0 2e-53 MELIITELLTYHLWLCLPLFLFPIINLYALFFYPSHTKKLKILAITAPAYYLFLSASLFS GLVIWATLGFILTPKILVMTALWLVVFVAEIKRHKKQKITRVESNPAIRESFFKWARLKY LFDFCAFGFIFILWS >gi|197325097|gb|DS990369.1| GENE 174 177352 - 178014 560 220 aa, chain + ## HITS:1 COG:jhp1007 KEGG:ns NR:ns ## COG: jhp1007 COG1385 # Protein_GI_number: 15612072 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori J99 # 1 217 1 222 226 175 44.0 5e-44 MQFIIHKDAGNESLILDGEAYHHLFHSRRTKKTESLQLRNLRDYYCYTYSIADLSKKYAT LRLESKLETPSQNPSKGHLIWAMIDPKIIEKTLPFLNELNIYKISFFYAQYSQKNFKLNL ERIQKILENSCMQCGRITLLEIEMLENLQEVLEKYPNTGVLDFGGKALESSLEIPILVGA EGGFSPQERELLKSNPKYTAIHSNILRSETATIYAMSKIL >gi|197325097|gb|DS990369.1| GENE 175 178505 - 180178 1668 557 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253826776|ref|ZP_04869661.1| ## NR: gi|253826776|ref|ZP_04869661.1| putative sugar transferase [Helicobacter canadensis MIT 98-5491] putative sugar transferase [Helicobacter canadensis MIT 98-5491] # 1 555 1 555 666 1011 100.0 0 MSENLNVVCIGNCDLYPTRGFVGGLRESGAKVVSYSESWNAIHSVLYHIERVENQDTFHN SDLIVLGIGGQSNNRDWIPLYKILYKKLWKFNKKIVVCIWLHSYLNELEKFHHVQCETYG FNLIDTVRYCKEKGIFDFYAGYYDFRHPFYSFMSGISKRIIREYEKLQYPKQLSNVIDDA DFKIVSFVEFVNEDAIKKVHTYTHYESIYVLQNGQEVKIPSKYEGYTLIGIHTFNGAVYN FVQGKLFTTFILKNKSKKALVHTIRYNYVTPINSKYFIIDNETFLERMFDETIEKSQSIF NKCAAEDANLGLIALLLIKDNKCLENHEIDYDENFKLSSKYDFSYLLDFLIECKKFIEDY NKRQDPIKLGPLQTQLQEKDQIIQTKNQELTSKTKELTQTKNQLDSAKIQLNSTKKELDF TKQQLDSKTKELISLPIKKQTLEIKNLEQDNLLKQIQIQEAKQDLINKQLHTKQLEKELG YKSNVLKELELKNQELIQTKNQLDSTKKELELKNKQLESANKILSSNPNTSHFIQNTSNF KGKLSYLNTLTTAKSAS >gi|197325097|gb|DS990369.1| GENE 176 180189 - 180359 198 56 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|313142213|ref|ZP_07804406.1| ## NR: gi|313142213|ref|ZP_07804406.1| predicted protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 56 13 68 68 91 100.0 2e-17 MDNLVEDGIIDSMEIMSLMQEIETHYGVFIDFDYITPENLRNFQSISAMIESIKNQ >gi|197325097|gb|DS990369.1| GENE 177 180414 - 181154 415 246 aa, chain - ## HITS:1 COG:BMEI1418 KEGG:ns NR:ns ## COG: BMEI1418 COG0223 # Protein_GI_number: 17987701 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Brucella melitensis # 79 200 104 225 259 83 36.0 3e-16 MKFPFSKLIVIGRGNVARECLRIAEQFFETKGELLFLFGNSAEKSNLDLLFKNVKNSLII SANNFYIFKEECVKNNTIINYHNALLPKHRGSNAHIWAIWEGDKKTGVTWHQVDCGVDTG AIIVQKEIEIGEMMAMELLQKQHLLAIETLEECLMKLLENKVMQQKEEETKYHFASKLPN DGFLDLLWEYNKIIRFMRSMDCGFARAKVKLSDDILRILKFNFNDDRIELILEKHIVILI LKKEKK >gi|197325097|gb|DS990369.1| GENE 178 181138 - 182451 729 437 aa, chain - ## HITS:1 COG:Cj1307 KEGG:ns NR:ns ## COG: Cj1307 COG1020 # Protein_GI_number: 15792630 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Campylobacter jejuni # 1 435 67 501 502 747 84.0 0 MPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKVIEILKPRLFITSKELKFDLALPTL YTEDFEGFDIDECLIQVAKEKHIDTNLLYVLFTSGSTGIPKGVSIAHKSVIDYTSWVCET FKFDENEILANQAPFYFDNSVLDIFSSIKSSATLHLLPNHLFAFPNKILECLEKEKVSTI FWVPSVLVYFANEKGLQKYPLNCLKRILFAGEIMPNKQLNIWRKYLSNAFFANLYGPTEI TVDCSFYIVDREFKDEELLPIGKACNNTQLLVFDENMNLITPKQIGIKGELYVRGTCLSL GYYNDKEKTQKAFIQNPLHNHYLDLLYKTGDVVAYNEFGELLCYGRVDNQIKYMGHRIEL GEIESVINSHQKIRNSVCIFKEEIVCFYESEEEIDLKVFLKDKLPAYMIPKKIVKLDKFK LNQNGKIDRKVLNEISI >gi|197325097|gb|DS990369.1| GENE 179 182638 - 182769 63 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSIVMTLPPPTELILVSIIFQSFYSQKFSLMIPKKTKNPLHTR >gi|197325097|gb|DS990369.1| GENE 180 182859 - 183314 355 151 aa, chain + ## HITS:1 COG:no KEGG:WS0532 NR:ns ## KEGG: WS0532 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: Bacterial secretion system [PATH:wsu03070] # 1 91 8 102 163 75 50.0 9e-13 MLELVFILVILGILAAIAIPKISASRDDAKLVALKSDISTLKSSFPAYFLSQGQGTFSDA ITLSESNWNLGDYTISTKLESSRGGSCISAELLSDSNGTQANTPNQVRFLKISTTETPDT NGDTCQKLLYQINLTSANPLTIPLLSNSIVF >gi|197325097|gb|DS990369.1| GENE 181 183304 - 183714 82 136 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418694|ref|ZP_03656700.1| ## NR: gi|224418694|ref|ZP_03656700.1| hypothetical protein HcanM9_05396 [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 136 1 136 136 216 100.0 6e-55 MYFNKPFSNHKAFTLLEVLLVLLLLGILLSFGIPKFFNYQQSACDKKLQIQVLNFKIALR NHIKAQNNSAQNLDLSKLYKNLDMQPSRCYFKIQNNGFIGINSDKSVSFVLKNGILECEN TKSSTLHNGESYCDIF >gi|197325097|gb|DS990369.1| GENE 182 183740 - 185530 2091 596 aa, chain - ## HITS:1 COG:Cj0019c KEGG:ns NR:ns ## COG: Cj0019c COG0840 # Protein_GI_number: 15791418 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Campylobacter jejuni # 4 596 2 592 592 447 51.0 1e-125 MTNSNKKTSLFLYQFIGLSVFVLIFMLLLLFFIFNNYVSEEKNSQIADSLKKLESYDLRI DSVFKNQFNFINYDSSVRDSNSFAKELEFLKSQGIEISKIQEIFNAKQNQLDRFKRANSI AFNSKTFLYVLHQEIAKLTENNPAYSQVLKLTNVILAKLATENILESENLKNLNSIIKQL ESFSNLNEQNIQLFIKHYKMMLAQASLMQQNSTIYQEQALQKEIALVNAMVKERLKKESQ NRLYIACGVFGATLLLVLFFIFLTLKKVIIPISLLEKLTKNLASKEANLKSRLVIDQKSE LSQSANYINTFISVVEKSILEAMENAKSSLHNSQKLQENAAVLQQNSDAQNEQIIDLRKI GEALDSHIQQNSVLAENTIEDMNKMQSVMLKAEGTLKELAELITQSNEQESIIIENMDNL SKSADSITGITESIKEIADQTNLLSLNAAIEAARAGEHGRGFAVVADEVRKLAEKTTKSL LEINATVSLITQQIQENIEGMDVVHRSMSKTNEVAQELQGEVVDTMERLRMGVESTQNMA EKNIEAKDKMAILDKKLGAVSDISQHIKTLSSEVNAISISVLDGSSKLSSRLSSFQ >gi|197325097|gb|DS990369.1| GENE 183 185514 - 186452 1184 312 aa, chain - ## HITS:1 COG:Cj0020c KEGG:ns NR:ns ## COG: Cj0020c COG1858 # Protein_GI_number: 15791419 # Func_class: P Inorganic ion transport and metabolism # Function: Cytochrome c peroxidase # Organism: Campylobacter jejuni # 6 310 4 304 304 379 59.0 1e-105 MRAIWLFLLIFVSLQAVEFAEVGVEPIPDSIPFDEQKARLGKKLYLDANLSKDKTISCNS CHPLENYGVDNLRLSLGVGGATNGATNSPTSFNSVFNFVQFWDGRAKDLQEQAAGPLLNP VEHGMTEDAVVAAVKDNPEYVKSFGELYEEGITFLTITDAIAEFEKTLLTPNSPFDKWLK GDENAITPAAKRGFEAFKSNGCISCHQGQNVGGNMYQKIGIFEPYNGSGPNGNLGRYNVT QDENDKLVFKVPSLRNIAKTAPYFHDGSVETLEVAVQLMAFYQLGKFLDNEVVMDIVSFL ESLTGEYNDKLQ >gi|197325097|gb|DS990369.1| GENE 184 186541 - 187545 1172 334 aa, chain - ## HITS:1 COG:jhp0188 KEGG:ns NR:ns ## COG: jhp0188 COG0332 # Protein_GI_number: 15611258 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Helicobacter pylori J99 # 4 333 2 330 331 396 59.0 1e-110 MEKKIYASLNSIGAYVPNKIVTNDDLSKIVDTSDEWIQKRTGIKERRFADSTEATSDLAT KAAQLAIKRAKLTPNEIDMVIVATISPDFLCMPSTACVVANNLGIINKPAFDISAACSGF IYLLYLAKSFIESRACKNILIIGAEKLSSIIDMEDRSTCVLFGDGAGAAVIGSSEDPSQA ILDVRVASNGGYQEFLMTPGCGSRNPANAKMLEDRLQFIKMKGNETFKIAVKTLTNDVIE IMKNNHLTKDDIDFFIPHQANLRIISAVGESLGFPIEKVAQSVQKYGNTSAASIPMAMND YYEAGALKKGSRLLLDAFGGGLTWGSAILSFNGE >gi|197325097|gb|DS990369.1| GENE 185 187561 - 188535 768 324 aa, chain - ## HITS:1 COG:Cj0329c KEGG:ns NR:ns ## COG: Cj0329c COG0416 # Protein_GI_number: 15791697 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Campylobacter jejuni # 1 316 9 323 328 352 56.0 4e-97 MGGDFGASPLVEGALWALKERDFSLVLIGNKTILDPLIPVDMANKVQIVHCEDFIAMDDG ATAALKRKDSSIYLAMEMLKNKEVDAVVSAGHSGATMSLATLKIGRLKGISRPAICTLMP RIDGNKSLIIDAGANVDCKPENLFEFGIMGYEYAKWILKYPKVRIGLLANGEEECKGNEN TKAAMEILRNHPSFIGNIEGNNIFDSSVEVVVCDGFVGNVVLKTSEGVADSIIHLLKQYI KSSLIGTFGALFMRGVFKKLKKQIDYAEYGGAPLLGIDGNVIICHGKSNAKAMKNAIFQA ISTIENSINDKILSALQLHKMPTK >gi|197325097|gb|DS990369.1| GENE 186 188578 - 188730 267 50 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|224418699|ref|ZP_03656705.1| 50S ribosomal protein L32 [Helicobacter canadensis MIT 98-5491] # 1 50 1 50 50 107 100 6e-22 MAVPKRRVSKTRAAKRRTHYKIALAMPIKDKDGTWKMPHRVNKFTGKYKD >gi|197325097|gb|DS990369.1| GENE 187 188754 - 189125 170 123 aa, chain - ## HITS:1 COG:no KEGG:HPSH_01020 NR:ns ## KEGG: HPSH_01020 # Name: not_defined # Def: hypothetical protein # Organism: H.pylori_Shi470 # Pathway: not_defined # 22 119 16 115 118 65 40.0 5e-10 MASKIPFLRAFQVCKNGEKIPFCLQQDSVKFEGFLSYDRSYRDFIKLDARLQGEIELICD LSGEEYLEVLDNEVSFYLSNGKVSLDNEHFEEVVECENGSVDLEEILRGELEMIRCDYHI KTN >gi|197325097|gb|DS990369.1| GENE 188 189126 - 189539 507 137 aa, chain - ## HITS:1 COG:Cj0332c KEGG:ns NR:ns ## COG: Cj0332c COG0105 # Protein_GI_number: 15791700 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Campylobacter jejuni # 1 137 1 137 137 209 81.0 8e-55 MEKTLSIIKPDAVKKNVIGKIIDRFESNGLRIAAMKKVQLSQSDAQEFYAIHKSRPFFND LVTFMVSGPVVVMVLEGLNAVAKNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSL ENAEKEIKFFFAEREIC >gi|197325097|gb|DS990369.1| GENE 189 189637 - 190332 724 231 aa, chain - ## HITS:1 COG:jhp0715 KEGG:ns NR:ns ## COG: jhp0715 COG1427 # Protein_GI_number: 15611782 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Helicobacter pylori J99 # 1 231 1 227 227 199 49.0 4e-51 MRFGKIDYLNLLPFEVFIRAYPTPSQFMLCYKKRKSYPAKLNKEFLFGYIDAGFVSSITA LRKSNFFASRIGIVARKKVLSVICLKEEEGSDYQSATSNALLKVLGLKGRVLIGDRALVE VLKQKKEGRKDYIDMGEYWVSKQGLPFVFGRLCVRKDLAFFKKVIQAFEKKHIKIPYYIL DEASCNTGVSKKQILEYLKVLSYKIDKKANFGMQRFYRELRILGIKPPKRF >gi|197325097|gb|DS990369.1| GENE 190 190488 - 191345 1087 285 aa, chain + ## HITS:1 COG:Cj0248 KEGG:ns NR:ns ## COG: Cj0248 COG1639 # Protein_GI_number: 15791619 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein # Organism: Campylobacter jejuni # 1 282 5 284 285 311 56.0 1e-84 MNPLLLKAIQDLPPLPSTVTELRNYIDSNGANLEVKKIATIIQKDPLLVGELLRLANSPF YGFSRQVSTIQQVISLLGINNIKNIVLANSLKSTFTIDVSPYGLDTTDFLNNCSKEVDFI SNWLKEEDKALANTLVPCAMLLRLGMILLSNMLIKADKDKEFLAENKAHNFQDIHEVENH YCGVDSISFLGFLFDYWKFDEVLIQSIAYIDTPHAATNEIKKNAYALAITNCLFEPYAPL SHFNSRKAIALLNEAKAQNIDFDMGNFLANLPKEAKENLAQELGS >gi|197325097|gb|DS990369.1| GENE 191 191402 - 191998 773 198 aa, chain - ## HITS:1 COG:HP1563 KEGG:ns NR:ns ## COG: HP1563 COG0450 # Protein_GI_number: 15646170 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Helicobacter pylori 26695 # 1 198 1 198 198 321 76.0 5e-88 MLVTKKAPNFKAPAVLADNQIVEDFELARNLGRNGAVVFFWPKDFTFVCPSEIIAMDHRV KAFAEKGFNVIGVSIDSDVVHFAWKNTPVNQGGIGNVQFPMVSDITKQISRDYEVLIDEA VALRGSFLIDKNQVVRHAVINDLPLGRNMDEMLRMCDALTFFEENGEVCPAGWNKGDKGM KADAKGVAEYLSQNADKL >gi|197325097|gb|DS990369.1| GENE 192 192157 - 193317 1717 386 aa, chain + ## HITS:1 COG:HP0197 KEGG:ns NR:ns ## COG: HP0197 COG0192 # Protein_GI_number: 15644826 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Helicobacter pylori 26695 # 1 383 1 383 385 636 77.0 0 MKKEFLFTSESVTEGHPDKMADQISDAILDYIIERDPKARVACETLLSNGYCVIAGELKT HAYAPMQDIARRVIREIGYIDARYGFDYRSAGVLNGIGEQSPDINQGVDREDGEIGAGDQ GLMFGYACRETDVLMPLPIYLSHRITERLAALRKDGTLPFLRPDGKSQVTIKYVNGIPVG IDTIVVSTQHSPETSQETLRSAVIEEVIKKALPEQFATDNIRYFINPTGKFVIGGPQGDA GLTGRKIIVDTYGGSCPHGGGAFSGKDPSKVDRSGAYAMRYVAKNLVASGICDKATVQIA YAIGVVEPVSILVNTHGTGKVEDSKIEECVKTLFRLTPKGIIESLDLLRPIYQKTASYGH FGRELPEFTWEKTDKAEAIKDYFNLK >gi|197325097|gb|DS990369.1| GENE 193 193410 - 194483 758 357 aa, chain - ## HITS:1 COG:BS_gspA KEGG:ns NR:ns ## COG: BS_gspA COG1442 # Protein_GI_number: 16080894 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Bacillus subtilis # 4 250 47 284 286 86 27.0 8e-17 MDSISQENTKNLENLISELSKIYPCTLTIYILDDQLFREYSMPTLNGNYLAYYRLKIGSA LPLSIKRCVYLDVDMIVLGDLRELFEVDLQGKICGVVMEHHSQKIYKPKNQAYKPINITG SYFNSGMLLVDLDLWRQENIEDRAFEIGKNYHYSFHDQDILNIVLSGKTHKVGIEWNLMV CVYYRAICKDEKGRDKLPYYRKDFNSALRNPKILHYFTHTKPWNNAKIYLDYHNKFLDQY WWDMVDQTPIFKEKLLQLKPQADSALAFQCLVGYKLLRYYQKGLFALIPFYTYSLIKNKD SIEQEEIPLKDYNLARDIGRVALNAYHKRKKGKLISFPFRMLHMIKNFRKNQARILG >gi|197325097|gb|DS990369.1| GENE 194 194483 - 194602 84 39 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253826760|ref|ZP_04869645.1| ## NR: gi|253826760|ref|ZP_04869645.1| glycosyl transferase [Helicobacter canadensis MIT 98-5491] glycosyl transferase [Helicobacter canadensis MIT 98-5491] # 1 37 1 37 397 69 91.0 7e-11 MYNVVLNLNENYVPYAAVLITSIIQNTQSSGGGAIIFTF >gi|197325097|gb|DS990369.1| GENE 195 194890 - 195210 524 106 aa, chain - ## HITS:1 COG:Cj0936 KEGG:ns NR:ns ## COG: Cj0936 COG0636 # Protein_GI_number: 15792265 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Campylobacter jejuni # 1 100 1 108 112 78 64.0 3e-15 MKKLFLAFFALASVAFAAEGAGEMLLSYSAIAAGIGLGIAALGGAIGMGSTAAATISGMA RNPGVGGKLMTTMFIALAMIEAQVIYTLVVALILLYANPFAGILGL >gi|197325097|gb|DS990369.1| GENE 196 195402 - 195698 378 98 aa, chain - ## HITS:1 COG:Cj1238 KEGG:ns NR:ns ## COG: Cj1238 COG0854 # Protein_GI_number: 15792562 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal phosphate biosynthesis protein # Organism: Campylobacter jejuni # 2 97 160 255 257 98 56.0 3e-21 MLFSNLPKMKNSIKELELPKKELLGLWEQSLESLKKGAKKANELGLGVAAGHGLNYVNLK PILEIQEIVELNIGQSIIARAIFVGLENAIRELKALLV >gi|197325097|gb|DS990369.1| GENE 197 196070 - 196549 675 159 aa, chain - ## HITS:1 COG:aq_1423 KEGG:ns NR:ns ## COG: aq_1423 COG0854 # Protein_GI_number: 15606602 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal phosphate biosynthesis protein # Organism: Aquifex aeolicus # 1 157 1 157 242 161 52.0 5e-40 MLLGVNIDHIATLREARKINDPDPLEAIFIAKRAGADQITMHLREDRRHMHDEDILRIAQ SSFLPINIESSINPTIIEFLLKIAPHRITLVPENREEVTTEGGLNVVGNFERILQITKSF QEVGTQVSLFIDSEASQIEASKEVGAEMIELHTGSYAAS >gi|197325097|gb|DS990369.1| GENE 198 196623 - 197444 920 273 aa, chain + ## HITS:1 COG:jhp0628 KEGG:ns NR:ns ## COG: jhp0628 COG3298 # Protein_GI_number: 15611695 # Func_class: L Replication, recombination and repair # Function: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB # Organism: Helicobacter pylori J99 # 1 271 7 272 276 248 48.0 1e-65 MVMVFDCETIPDVTLIKQGFKKEFEALNFDFSDELAISKKAMEIQKENSGSEFLPICYHQ VVSIAAIFCDEYGNFKKVGNFKAIGNTKEEREKSLIQAFLDYLNKHQPKLVSFNGRGFDL PMLLLRAMKYKLQANAYFETDNLQYNKNKWENYRQRYSEKFHTDLLDVLGNFGSVRGLKL DVLANLMGFPGKYDIHGDMVLELYYQGEYEKIDEYCQSDVLNTYGVYLHYELLKGNLNVE QYQEILSNWRENLPKDKSYSSIFFDTITQQIHS >gi|197325097|gb|DS990369.1| GENE 199 197459 - 198364 926 301 aa, chain + ## HITS:1 COG:no KEGG:WS0616 NR:ns ## KEGG: WS0616 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 294 1 294 301 361 63.0 2e-98 MLSKEILEFSEMRYEIRAYLCFLLQRNIKNHLPHIELNKIIDGLHKIGSEVSIFELLYVL DSSGNLAIDGISNDSSIECKKGENHNDRAYFYRAIKEKKCILTDPYPSLASGNLVITASY PLYNDKGKLMYVVCLDIPLEKTSLLLKPMPLFGFFSHFKKGVYFIITLALFLVCGLLLVK GGISMWEALERFNSLDIKDIFEATILITLSLAIFDLVRAIFEEEVLGRQKSQDSKMVHKT MTRFLGSIVIALAIEALMLVFKFTIIEPEKLIYAVYLIVGVTLLLAGLSLYVKFTAGVKR D >gi|197325097|gb|DS990369.1| GENE 200 198367 - 198567 401 66 aa, chain + ## HITS:1 COG:MTH1524 KEGG:ns NR:ns ## COG: MTH1524 COG0118 # Protein_GI_number: 15679521 # Func_class: E Amino acid transport and metabolism # Function: Glutamine amidotransferase # Organism: Methanothermobacter thermautotrophicus # 1 66 1 64 198 65 48.0 2e-11 MLGIINYNSGNLASVQNAILKLGGEVRIESNPEKLKSYDRLILPGVGAFGEAMEHLEKSG MKESIF >gi|197325097|gb|DS990369.1| GENE 201 198826 - 199194 269 122 aa, chain + ## HITS:1 COG:MJ0506 KEGG:ns NR:ns ## COG: MJ0506 COG0118 # Protein_GI_number: 15668683 # Func_class: E Amino acid transport and metabolism # Function: Glutamine amidotransferase # Organism: Methanococcus jannaschii # 1 121 81 197 198 106 45.0 8e-24 MQLLFQKSYEFGEHLGLGLIEGEIIKFDKKLLKEDEKIPHMGWNLVQKTKNSPLLKDLEE TFYLYFVHSYYLGDFKNAIGISHYGVDFTALVQKDNLLGIQPHPEKSHNVGLKILENFLK FS >gi|197325097|gb|DS990369.1| GENE 202 199217 - 201583 2564 788 aa, chain - ## HITS:1 COG:no KEGG:Spro_3913 NR:ns ## KEGG: Spro_3913 # Name: not_defined # Def: outer membrane autotransporter # Organism: S.proteamaculans # Pathway: not_defined # 1 759 280 1058 1091 251 28.0 1e-64 MSHQSWSNYLYFMEAELALLQDLGYRFDRKLYFGDSIYENGIVWNSTHGFNDRDAQGWVL GSYNPSAYGVGLHIYGRENVITQNHNILSRGIAASGIRIDGSDNTLNLASGTKIHMLGDY SSGVLVAYGKNHTLNHNGEIIAEGKEGIGIHIDFGDNELGNNSEYRGSYMFANPNYEEIE FQDFLEAYRLNGALVSNLNLGNKSYTQGDLAAIYIADNAFVENINIQMGATIKGDIISLW NPNNSKLLQGYANQFFTTLNFENFQTRQSNPVNAFVLEGGIYGYNSFKVKVNGDLVLKDN AWVYDLYNNASLKLENSNASIKIKNHFENAANATLNAPINPQGKLNIQLGNSATLDGNLK FYMAKGFYGDKLQLDRENLFNTNSGNTTNISGKFATIAYDDSTNLSHTLEFHFDNLSDTI EITRDYMKFATNEGDKTLANALESLAFKTEATNPTSVLFEEIDFTRDTQAITRTLENLNA TAYVNTAKASLDFQQRLNQDFLNDFRKDSNRLEWLVQVIPFGNYSYTKENGDFSAYRGYG GGIHTSAIKNFNDSWNMGLHFIANSSYLEFQNDLESNVKSKGGYAGVTTRYDLENFYLFG SLRVGYENNELNRAINVGSYTQNFSANFNTLVTSTFVGIGKDFIVSDALSFLPFGYIEYN ILHTPNITEKQDSNLALRVKSKDYYSLGSFVGAKIEYHTNFYNSVFNLALLGGYYYFFND ELKGDASFKGDSNSAFYAQNVLNDKSSLRMQVKTGLSYQNGFFTNLSLQSDIKSRSDFYG KLEAGIRF >gi|197325097|gb|DS990369.1| GENE 203 201694 - 202611 914 305 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418716|ref|ZP_03656722.1| ## NR: gi|224418716|ref|ZP_03656722.1| hypothetical protein HcanM9_05508 [Helicobacter canadensis MIT 98-5491] # 1 305 1 305 305 579 100.0 1e-164 MKLYTKIFIFALSGGYLFGYDSILVESKQKPIFQLDFYNQGESSTFMGEAQVSPFTLTDE QKNEVKRAAQFLADILSVNATNNEPIALSVSTMQEANASAISYDILTNGNSALFAQLLYE SLSLQEAKEDLSHIVINQDSQGNPIFLSSEDLKYLGTINIGTLDWYIAPHPSVLPINKNQ GDTFSIFTHELFHAFGLGATISNGLNAIFASNLNAYTRHLVDYRGVYAQGGMQIVDDKFY ESNRGIFLVDVGNDMWGDNFGGSLSNASGHAYFVGNNVSEVIKNARLGFDAFNGLPISGW ENGSA >gi|197325097|gb|DS990369.1| GENE 204 202780 - 203487 1062 235 aa, chain + ## HITS:1 COG:BS_hisA KEGG:ns NR:ns ## COG: BS_hisA COG0106 # Protein_GI_number: 16080541 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase # Organism: Bacillus subtilis # 3 235 6 243 245 201 46.0 8e-52 MQIIPAIDLKDGCAVRLIQGKMESAKIYYKNPLEVAKIFEEMGAEYLHIVDLDGAFCGKP QNKAVIENIAQNSTLKIEIGGGIRNEETIKEYLNLGANRIILGSIALKDPNFAKQMAQKY PIVIGIDAKDGKVATEGWDKVGRVLASEFAKEFQNSPIEAIICTDISNDGMLNGINIDFT KEIAQSSGKFTLASGGLSCLEDLEKLYLSKIDGVIVGKAFYEKKLDLKEAFKKFK >gi|197325097|gb|DS990369.1| GENE 205 203605 - 203973 488 122 aa, chain + ## HITS:1 COG:HP1067 KEGG:ns NR:ns ## COG: HP1067 COG0784 # Protein_GI_number: 15645681 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Helicobacter pylori 26695 # 1 122 3 124 124 198 84.0 2e-51 MVVVDDSSTMRRIIKNTLARLGYNDILEGENGVEGWDQMNANPDVKVLITDWNMPEMNGL DLVKKVRADERFKDIPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGV ND >gi|197325097|gb|DS990369.1| GENE 206 203976 - 204803 1432 275 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224418719|ref|ZP_03656725.1| ribosomal protein L11 methyltransferase [Helicobacter canadensis MIT 98-5491] # 1 275 1 275 275 556 100 1e-157 MESYNCLNIKVDKFLWLFENKALEITKEAIEEIENGFIIRTYQDTNAIQKQLEAYSKELE NLMQEKIHLEFESNILNNEDWIAKYRDSIQPIECGKYYIYPPWFSPKTDKINLIIEPALA FGSGHHGSTFGCLEALNNLSLANKTLLDVGCGSGILSIAAKKSGAEVWCCDTDEIAVNAT KENAQKNNLNLDKVFLGSIDKITDKKDYFDVVIANILADIIVALPLDSYVKKGGILILSG ILEKYTKKVLDKFKNLELLTQNNHQEWVTLTFKKI >gi|197325097|gb|DS990369.1| GENE 207 204812 - 206743 1163 643 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 25 643 8 622 636 452 41 1e-126 MQRQDNNQNQPQDKKPNNFFNQNPLLMFVIFAIIAIVIFRFMSPNGEVSKLSGANTTKTI NYYELKKLIENKQVDFVAIGQTNIKATANNENGKIVYNAQRVSPDNTLIPLLDEKGVEYT GYSESNWLSDMLFGWVLPIFIFFAIWMFLANRMQKNMGSGILGFGSSRKLVNSEKPNVKF DDMAGNAEAKDEVVEIVDFLKNPERYAALGAKIPKGVLLVGPPGTGKTLLAKAVAGEANV PFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPSIIFIDEIDAIGKSRANGMVGGGNDE REQTLNQLLAEMDGFNSDSSPVIVLAATNRPEVLDPALLRPGRFDRQVLVDKPDFEGRVE ILKVHIKNIKLARNVDLFEVSKLTAGLAGADLANIVNEAALLAGRNDKKGVEQSDFLEAV ERSIAGLEKKSRRISPKEKKIVAYHESGHALIAEITKGAKKVTKVSIIPRGLAALGYTLN TPEENKYLMQKHELLAEVDVLLGGRAAEAVFLGEISTGASNDLERATDIIKAMVSYYGMT DVAGLMVLEKQRNVFLNGGLGSTREYSEEMAQKMDSYIKTLLNERFEAVKESLETYKEAI ENIVKELFEKENIDGEKVREIIAEYEKAHNLESRIVKEEKEEA >gi|197325097|gb|DS990369.1| GENE 208 206752 - 207357 334 201 aa, chain + ## HITS:1 COG:Cj1115c KEGG:ns NR:ns ## COG: Cj1115c COG0688 # Protein_GI_number: 15792440 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine decarboxylase # Organism: Campylobacter jejuni # 9 199 5 203 205 65 28.0 5e-11 MLKTTTQIIAKEGWKPIIITLIVLFFCWLLSWKFIGFLAFVFLLSLLYFYYNPERIAQDI SQDVILAPIDGIITHIENQEDSLLITIKKPICFCGMIRMPLNGMAKKLYHISGLANAQES TGERVCLEFMGSKTCISLILYPKICLRNLFIYFCDSKFREGERIGFFLKGMAKLQLPKNV EVKVSIGDKILAGSSIMGYIR >gi|197325097|gb|DS990369.1| GENE 209 207357 - 208088 559 243 aa, chain + ## HITS:1 COG:HP1071 KEGG:ns NR:ns ## COG: HP1071 COG1183 # Protein_GI_number: 15645685 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine synthase # Organism: Helicobacter pylori 26695 # 1 243 1 235 237 195 49.0 6e-50 MKIDPLYILPNFFTGASIYLGILSISYATMGRFQLACWLVLLSLIFDGLDGRVARLTGTT SKFGVEFDSLADIVAFGVAPAMILFTYVGYMYGKLGIIVSGLYVVFGAIRLARFNVTTNQ NEPNVFIGLPIPAAAVFVISWLLLEMGYFQKYFENPKMISPFLLIGSLIVALLMVSNIRY PSFKKLNFEKISFSKIIVLLMIILAILFAYPVLSITILITCYVLFGPSRALYYLTKHFIE RRK >gi|197325097|gb|DS990369.1| GENE 210 208216 - 208395 385 59 aa, chain + ## HITS:1 COG:NMA1270 KEGG:ns NR:ns ## COG: NMA1270 COG0119 # Protein_GI_number: 15794202 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Neisseria meningitidis Z2491 # 6 57 9 60 517 87 86.0 6e-18 MEMIKIFDTTLRDGEQSPGASMNTEEKIKLALQLEKLGVDIIEAGFAAASPGDFEALAS >gi|197325097|gb|DS990369.1| GENE 211 208728 - 208964 87 78 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSSHKLLASLTASTARLMTSLGCILSLYSICIGLVAMKVWIRLYFAFSSAFAADSISFGT ALAREHIVLSLSVSEIAS >gi|197325097|gb|DS990369.1| GENE 212 208876 - 210084 1579 402 aa, chain + ## HITS:1 COG:aq_2090 KEGG:ns NR:ns ## COG: aq_2090 COG0119 # Protein_GI_number: 15607049 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Aquifex aeolicus # 1 393 111 503 524 370 49.0 1e-102 MEYKLKMQPNEVIKRAVEAVKLARSLCEDIEFSCEDACRSDIGFLKEVALAVIEAGATTL NLPDTVGYRLPNEIGEMIKEMKTCVGDRAILSVHCHNDLGLAVSNSIAGIQNGARQLECT INGLGERAGNTALEEVVMILKTRKDIFGNLDTNIKTKEIYATSKLVADITGIRPQPNKAI VGKNAFAHESGIHQDGMLKHPETYEIMKSSDIGIPQENGLVLGKHSGRAAFKDKLVSLGF DGISQEELDSAFEKFKILCDKKKEVYDEDIRSILTDQTSKIPQIFELISLQISSDSNGVP YAAISIQKDGTNRIDAAIGNGSVDAILKTIDRISGYNGVLKDYKVEAVSEGKDALAKVVV KAEFEPNKPAFIGHGLHLDTLQATARAYIGALNSYLSMQKLM >gi|197325097|gb|DS990369.1| GENE 213 210161 - 211093 1181 310 aa, chain + ## HITS:1 COG:Cj0379c KEGG:ns NR:ns ## COG: Cj0379c COG2041 # Protein_GI_number: 15791746 # Func_class: R General function prediction only # Function: Sulfite oxidase and related enzymes # Organism: Campylobacter jejuni # 1 305 1 292 297 332 57.0 4e-91 MEITPEKLFNARRKFLKLGAGSLVSALLADNLLAAVLKEQGLDFKEMSAEEAYTLNGEHL ELTKEEIATSYNNFYEFGFSKADPKNKAHTLKTSPWEIQIEGEIEKPFSISYTDLLKQVH LVERVYRFRCVEAWSMVIPWVGFELRELIELAKPNSNAKYMRFTTLYDPKQFPMQGAMQL LNFPYKEVLRLDEAMHPLTLLAVGMYKKPLPPQNGAPLRLVVPWKYGYKSIKSIHKIEFL KEKPISTWEEENPREYGFYGNVDPEVSHPRWSQSSERVIGKRGQVKTLYLNGYAKEVEHF YQGLDRTKLY >gi|197325097|gb|DS990369.1| GENE 214 211093 - 211398 255 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|253826745|ref|ZP_04869630.1| ## NR: gi|253826745|ref|ZP_04869630.1| hypothetical protein HCAN_0086 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0086 [Helicobacter canadensis MIT 98-5491] # 1 101 1 101 180 137 99.0 4e-31 MRIIIESIALLALFCLGYYGILSIENQILYGIYFSFEALYLYTGYFAFALLFVGLWLPHL YGRLLGLLAFVAMSWHFLIFAYLDFNLDIQLMLQKILAETS >gi|197325097|gb|DS990369.1| GENE 215 211840 - 211998 180 52 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYFLVYLAILLALLHILTQQKILSTLHYVLLIATLCALSLKIYKHLKAPKVS >gi|197325097|gb|DS990369.1| GENE 216 212017 - 213930 1548 637 aa, chain - ## HITS:1 COG:no KEGG:NIS_0037 NR:ns ## KEGG: NIS_0037 # Name: not_defined # Def: hypothetical protein # Organism: Nitratiruptor_SB155-2 # Pathway: not_defined # 16 636 15 615 615 485 45.0 1e-135 MAFSNLSKVLAKYFKGEQGESYVCDSIASLLRDKSDRENYYLIPKAKLGFAENIFEIDLL LLHPTLGIFVVEVKNWDSLELIKKHSPYDQANKYRNLILSILKENFGDCPIPINVEMRVI FPSISKSDAEEFFLRHSYDANMQPLTFFKEDLQNKESFGRFFKSTSINVPNKKDFLKITS LFVSAKDSKSNQIIPIITKDEVVFFDHKQLGIMNGYKDGFRIIRGVAGTGKTIILTNFVA QRLKKDSSECFLILCFNNNLENAIKTSFGENYDSKQIKIISIMAFLREISFDFSKVGIRV QSTKEIEATPISKQYEIFESDEALEEFKLKLQNYLKRYPVDYMLCDETQDMPEGFMRILY EEIKDCIFFIDEAQRFYSYSMENIAQVFHHPKFEKISMQGRVKNLKNVYRTPSNIAVCAF KILNKDKKLNEYYKKSFYLKSNFTSDINCVLETGEIKAQNFNYKENDNLKNLLKNFPSNE SNILLTFSKENVKGLENVLDSIGRKDIKIMTIQGIKGLEAQNVVVHGFVDFLNITQKYEP DLLYRKTYVLLTRARENIYLDFSGKGFSDEVNEILKIIQEDSKQVEAQKEKDSTESKGTS KFKLAKICPILSGAKDSAEFIVAASEIFAVVAGLCAL >gi|197325097|gb|DS990369.1| GENE 217 214084 - 214431 456 115 aa, chain + ## HITS:1 COG:Cj0235c KEGG:ns NR:ns ## COG: Cj0235c COG1314 # Protein_GI_number: 15791607 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecG # Organism: Campylobacter jejuni # 1 111 1 117 123 101 57.0 3e-22 MSGILLIIQFVLAVIITIIVLLQKSSSIGLGAYSGSNESLFGAKGPAGFLAKTTFVLGFL FVVNTIALGYFYTKDSQSSILDNVEIPANPTPATPAVPTAPVAPQSDTQPNQQGQ >gi|197325097|gb|DS990369.1| GENE 218 214432 - 214992 941 186 aa, chain + ## HITS:1 COG:HP1256 KEGG:ns NR:ns ## COG: HP1256 COG0233 # Protein_GI_number: 15645870 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Helicobacter pylori 26695 # 3 186 2 185 185 221 72.0 6e-58 MSLQEIYNHTQESMNKSIESMKKEFSTLRSGKVSVAILDHIRISYYDTPTPLNQIGSVIA QDASTIVITPWEKNLLKEIERAIQEANIGVNPNNDGETIKLFFPPMTSEQRKEIAKEAKN IGEKAKIAIRNIRKDSNDKVKKLEKDKVVSEDESKKGQEEIQKLTDNAVKKIDELVKHKE EELLKI >gi|197325097|gb|DS990369.1| GENE 219 215005 - 215616 834 203 aa, chain + ## HITS:1 COG:jhp1178 KEGG:ns NR:ns ## COG: jhp1178 COG0461 # Protein_GI_number: 15612243 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Helicobacter pylori J99 # 1 203 1 201 201 280 70.0 2e-75 MDITQIYKNSNALLEGHFLLSSGKHSPFYLQSAKVLENPKTAEELAKALAKIIQESQIKV DCVCSPALGGILAGYELARALGVRFIFTERVNGVMTLRRGFEIKKNEKILVCEDIITTGG SAMECAKEVESLGAEVVGYAALANRGICNRYQSPNTFDSKECKLDSNLPLFALEDFVFET YEPSQCPLCQQGSKAIKPGSRGN >gi|197325097|gb|DS990369.1| GENE 220 215632 - 216102 365 156 aa, chain + ## HITS:1 COG:HP1258 KEGG:ns NR:ns ## COG: HP1258 COG1714 # Protein_GI_number: 15645872 # Func_class: S Function unknown # Function: Predicted membrane protein/domain # Organism: Helicobacter pylori 26695 # 33 152 30 147 154 79 39.0 3e-15 MSKRWRNIKKQNISPNISLSLQEDSNYATFWERGKAQVIDTFMIYLPLLYFLTYVVIGSA KEFRESNWGPFVAVLIYGLIVALLMAFKGQTLGKKAYDLWVKRENNQPITFFFALLRFFL FLVSGVTIIGILMPLWRKDRSALHDLLLKTKVYKKG >gi|197325097|gb|DS990369.1| GENE 221 216165 - 216845 809 226 aa, chain + ## HITS:1 COG:Cj1204c KEGG:ns NR:ns ## COG: Cj1204c COG0356 # Protein_GI_number: 15792528 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Campylobacter jejuni # 1 223 1 224 226 244 64.0 7e-65 MNSIFTFAGLINHNHDFIIAFHVVLVAIIAVILAKLATSRMQVVPGTIQNVFETFLGGVI FMAKDVIGEEKARQYLPLTATLALFVFLANAIGIIPGFEAPSSSLSFTLTLALVVFVYYN FEGIRTFGIAKYFAHFAGPVKALAPLMFPIEIISHCSRIVSLSFRLFGNIKGDDMFLLVM LMLAPWVAPLPAFLILTFMAFLQAFIFMILTYVFLAGAVLASEEAH >gi|197325097|gb|DS990369.1| GENE 222 216829 - 217395 307 188 aa, chain + ## HITS:1 COG:CAC0495 KEGG:ns NR:ns ## COG: CAC0495 COG0352 # Protein_GI_number: 15893786 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Clostridium acetobutylicum # 6 162 7 166 211 66 31.0 3e-11 MRKHIKAYLITDPNLYPNSPLKFYDFYKNILDSQAISFACYRDKESPNPKLFEVFLKLNQ SYQIPSLLNSHFDMALQYGFDGLHCNSKQMHQISNAKQKLPLVFFSAHNEQEIKEADSYG ANGITISPIFQTPNKGQPLGVDFLKRLDLNCYKAEIFALGGIISQKEILEISQIPFCSFA SIRYFLNS >gi|197325097|gb|DS990369.1| GENE 223 217392 - 218480 1533 362 aa, chain - ## HITS:1 COG:RSc1988 KEGG:ns NR:ns ## COG: RSc1988 COG0473 # Protein_GI_number: 17546707 # Func_class: C Energy production and conversion; E Amino acid transport and metabolism # Function: Isocitrate/isopropylmalate dehydrogenase # Organism: Ralstonia solanacearum # 14 360 10 362 363 407 57.0 1e-113 MQNLKKENKLKNYKIAVIKGDGIGPEIINEALKVLKVVAEKFEFGLEFEDYLMGGIAYDL TKNPLPDETIEGCLKADATLFGAIGGEKWDNLPRELRPESGLLRLRKSLEVFANFRPAKV YDELIEASTLKPEVVRGVDILVVRELIGGIYFGTPKGRDKDRGFNTMVYSVDEVKRIAHI AFEAAQKRNKKVCSVDKANVLDVSQLWREVVSEVAKEYPSVELSHMYVDNAAMQLIRNPK QFDVILTGNLFGDILSDEASMLSGSIGLLPSASLGTKAAIYEPIHGSAPDIAGMGIANPI ATIASASMLLRYSLGEIKAADAIDNAIHLALKEGYRTKDIAEFGAKEICTTEQMGSIIAG KI >gi|197325097|gb|DS990369.1| GENE 224 218455 - 218940 651 161 aa, chain - ## HITS:1 COG:PAB0892 KEGG:ns NR:ns ## COG: PAB0892 COG0066 # Protein_GI_number: 14521550 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase small subunit # Organism: Pyrococcus abyssi # 1 158 3 161 164 202 61.0 2e-52 MQGKAWKFGDNIDTDLIIAARYLNTSDEKVLASHLMEDARADFVSLIGKGDIIVAGENFG CGSSREHAPVAIKAAGIAAVIAKSYARIFYRNAFNTGLPILEIKETDSICEGDVLEIDLQ GGVIKNITQNTQYHFTPIPPFMLELLEAGGLIPYAKSQKGK >gi|197325097|gb|DS990369.1| GENE 225 218950 - 219168 258 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418737|ref|ZP_03656743.1| ## NR: gi|224418737|ref|ZP_03656743.1| hypothetical protein HcanM9_05613 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0076 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0076 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 72 1 72 72 139 100.0 8e-32 MTIISQDSQEVLVEHCKIASAENLILGIEHSLLSADVEPQRVFFLKVPPEFKKKLYSKDW YWNGTKLEVYED >gi|197325097|gb|DS990369.1| GENE 226 219405 - 220661 1464 418 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418738|ref|ZP_03656744.1| ## NR: gi|224418738|ref|ZP_03656744.1| hypothetical protein HcanM9_05618 [Helicobacter canadensis MIT 98-5491] # 1 415 1 415 415 712 100.0 0 MKLSLIASRAILGLGILGSMSAFGADYTLNSANDFQTYFEESSEGSGKWALKEQYKNDNL TFNFDSLSLTSPQDQGGLGLNIKDITYNGTKFIIGDGMGEDDSYFGESDVEFQSANHSYT INADVEIKTDGNLLAQSPSYINGNVTISGSDQGGGSLEVYKIWGANGSLSIDGTLNSNYG YFTIADSNRKGGLLHVSGDVSLINSTFRVIAQSLSSLAFSDYELIRSDSKITLSGNNKVN LQYLVTLKELLGTQSIDGIATYEIDRVVSENLYEASLDLSEDEKRLSTDITTTEDARNLA KILEEEVKTRNDMLIELNNQKANTIDEAEKARIDEAITLITAQKTAIESAIPTDQNGQIS GKDFIDVVGTGIAQSDKALAGELVDKLNGIKNTEMHAALLLDVNKNIGGAVTSLKLAS >gi|197325097|gb|DS990369.1| GENE 227 221951 - 222112 76 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418739|ref|ZP_03656745.1| ## NR: gi|224418739|ref|ZP_03656745.1| hypothetical protein HcanM9_05623 [Helicobacter canadensis MIT 98-5491] # 1 53 35 87 87 89 100.0 9e-17 MNFIYLLFLYLMVLFLMVVLPSCPHFALNYKNSTTMHFIKKSQKIPNFTERYA >gi|197325097|gb|DS990369.1| GENE 228 222173 - 222979 796 268 aa, chain + ## HITS:1 COG:RSp1153 KEGG:ns NR:ns ## COG: RSp1153 COG2005 # Protein_GI_number: 17549374 # Func_class: R General function prediction only # Function: N-terminal domain of molybdenum-binding protein # Organism: Ralstonia solanacearum # 1 268 2 268 269 143 33.0 3e-34 MEVEGRIWVKENGKNFIGHGKVELLERIHKSGSISKAAKEMRMSYKAAWDCIDAMNKLSH EPIVISALGGKNGGGTSVTQKGLEIIKAFRQMENIYEELLKMFEQDLQAWNNLKIKEAFS LQKQLQTTRRPMIKTSARNQFFGKISHIKLGSINAEVTLQAGKLSIISTITLESLKEMNL KVGDSCYALIKANWIVVFNEQPKGSMRNCIDGEITNLTKGEVNTQIQIKHGDTYLSAIIT KESCDELELTLGKKVWFGFKANHVILGI >gi|197325097|gb|DS990369.1| GENE 229 223013 - 223777 973 254 aa, chain + ## HITS:1 COG:jhp0425 KEGG:ns NR:ns ## COG: jhp0425 COG0725 # Protein_GI_number: 15611492 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, periplasmic component # Organism: Helicobacter pylori J99 # 13 254 7 246 246 186 43.0 3e-47 MLKGFKKIAFIGALLLLGTHFANAEQIRVLGAASLKYVLEDIKNDFLKNRPNDQIEISYT SSGKAYAQIKNGAPIHLFVAADVSYPAKLYAEKLAPQKEEIYAKGKLVLWSNHPNFKIAE FTDILNPKITHIAIPNPKVAPYGRASMEALEATGLLSKIQDKLVMGESIGVATTYVESQN AEVGFTALSMLGENGINTPTMSFITIDEKLYKPINQALIIPNYGKGSKLAQAFKEYILSQ PAKDKFIQFGYAVE >gi|197325097|gb|DS990369.1| GENE 230 223764 - 224165 397 133 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|253826731|ref|ZP_04869616.1| ## NR: gi|253826731|ref|ZP_04869616.1| hypothetical protein HCAN_0072 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0072 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 133 1 133 133 207 100.0 2e-52 MPLNNLNGTLKAISSSNGISRLVLQSQDKEISLLLLEELSQDLLGKKLEINFKETNVILA LKLEGVKNTFYSKILEIQSDTLFTKLSLEFLPAKGGIIQTLTDLEFVSKNCLKVGDEVCW HIPENEIMLLGIS >gi|197325097|gb|DS990369.1| GENE 231 224165 - 224827 547 220 aa, chain + ## HITS:1 COG:Cj0301c KEGG:ns NR:ns ## COG: Cj0301c COG4149 # Protein_GI_number: 15791669 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, permease component # Organism: Campylobacter jejuni # 3 217 6 220 224 196 56.0 3e-50 MDFTQTMLLTFKVSLITTFLLLLISIPIAYFLAFSKSKITPFLETIVSMPLVLPPSVLGF YLLVLFSPQNVFGKFLLDTFNLKLVFSFEGLIVASILFTLPFMVNPIQTGFSSIPKSLYE AALSLGKNRLEILYRVLLPNMKNSILIGIVVSFAHTIGEFGVVMMIGGNIAGETRLASIA IYDEVEALNYALAHRYALSLFIITFCILLLTFYLNKKHTR >gi|197325097|gb|DS990369.1| GENE 232 224824 - 225696 802 290 aa, chain + ## HITS:1 COG:Cj0300c KEGG:ns NR:ns ## COG: Cj0300c COG1118 # Protein_GI_number: 15791668 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate/molybdate transport systems, ATPase component # Organism: Campylobacter jejuni # 1 287 1 288 294 229 43.0 3e-60 MIHLDFCKKLHSTQGELLLKVQCELKIQDLITLFGKSGAGKTTILRILCGLTTPDSGIIK VQDEIWFSSKDKINLPPQKRKVGFVFQDYALFPNMSVAENLLFALPKGGDKKRLDFLLEI TELQNLKNLKPSMLSGGQQQRVALARALVRDPKILLLDEPFSALDSAMAQKLQEELLRIH RQLNLTTFLVSHNFGEVFFLSQYVVYLENGIISKQGSPSKVFLNQIPSGKFRQSGTILEI QPSGLVCIVSILTGNEITKIIISNQESKTFKVGDFVIISSKAWNPTLTKI >gi|197325097|gb|DS990369.1| GENE 233 225703 - 226923 387 406 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 8 406 11 413 413 153 26 7e-36 MILNAFFLAFRQIKRNFLRAILTMLGVIIGVGAVIIMITLGNGTTQVITERMSSLGSNIL LVFPARDQTPGKGGQKQFMLQDIEDLKLQVGYLTRAIAPLASASVLAQFRQSNTQTQAQG INAEYFIATDWGIAEGREFSKEEYRSGSNVCMIGESVRKNLFSASNINPLGARIRLGSIV CDCIGILESKGQGAMGNDQDDVILLPLKTYQRSISKSDSLYNISRLMISLKDDVDSTEAV GAITEALRGIRNIREGQKNDFEIMDTKQIIEMMQSTTANLTLFLGAIAGVSLIVGGIGIM NIMLVSVTERTKEIGTRLAIGALESEVLLQFLIEAVTLSSLGGFIGIVLAFFGSLGICHL MEIPFSFDYGVATIAFLFSAFIGVLFGYLPARRASRLNPIDALRHE >gi|197325097|gb|DS990369.1| GENE 234 226923 - 227651 283 242 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 217 2 212 245 113 33 8e-24 MSFITLKDIHKSYGKPPNVFEALRGVNLEISQGEFVALMGPSGSGKSTMANILGCLDSPS SGIYDFCGVNVCELTLKQKAILRRHYIGFIFQGFNLLPRTTALENVELPLLYRQVPKKER IRLSMEALAMVGLEKWCHHSSNELSGGQQQRVAIARAIASKPLFLLADEPTGNLDTKRSV EIMEILSRLNTMSQITILMVTHEPDMAKYATREIVFLDGKVQSDSKESSKNSDLIKSHSK EV >gi|197325097|gb|DS990369.1| GENE 235 227652 - 228947 1749 431 aa, chain - ## HITS:1 COG:AGc3332 KEGG:ns NR:ns ## COG: AGc3332 COG0845 # Protein_GI_number: 15889118 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 12 424 32 428 437 232 35.0 1e-60 MTSTQSILNTINPQKNYKKIFLVWGIIGVVVAILIALIYWWNTREPSISYQTQKAFVGDI SSTISANGTLSPTNEVSIGSVISGIVLEVLVDVNDKVKKGQILAKIDSESIEQDLYRYQA QLESAKAQLKSAEVTLQEKQWQYKQYQNLYQKTKGKTPSILELETARTAYNEALSNVEIR KASIKEIETSIRSTQVDLRNSQITSPIDGVVLQRSIEVGQSVAASFQAPEFFIIAESLEE MELNASISEADIGKVKEGQSVEFSVDSYPTKTFKAEVDRVNYGSSNTSSSTSSSSTTTTS SGIVSYEARIYVNNKDLLLRPGMSATADIEVASAKNALLVPSSALYFTPKTQEVTPKRSP FNPFVQMRSKRQKQVETNNAGKTIGSVWILENGIPKEVEVEVGISDGQNTQILSDFIKSD MLVIVGQKQGE >gi|197325097|gb|DS990369.1| GENE 236 228944 - 230374 1511 476 aa, chain - ## HITS:1 COG:PA0427 KEGG:ns NR:ns ## COG: PA0427 COG1538 # Protein_GI_number: 15595624 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Pseudomonas aeruginosa # 5 467 6 465 485 132 26.0 1e-30 MSKIIAIILGFIVFCGCATQVPNYQELTQKIPQNFANQKIIEQIAVATPSSTILSPKEQM QILFADEVLWELMEIAIKQNMDLQIAQTRILQARSQLKSAWGEMFPKVSANLGVNDSHTR GSSTQNSAVIENSSQNSQIQATLSWEVDLFGRLNAAKNAKESLYYKSLEDLSNAQIVLLG DVANLYFTLREMSLNILLTQENILYYQDILELTRLKVENGLLDTTELFDAQDMLTNEQNI LEQLKTQQEETKNALLVLLDVKNLDFNLLGDYVFVSPSAFVLNTIPADVLLFRPDIKAAI QSLYAQVYNKENAKASLFPILSLSADLSEVLGSSKGNAGNLAWSLAAGLAAPILNRTQLT QNYFLQDAMLQESYLTLQKTLNTALAEVENAIFNTQSSQLQVQNNTQRLQNAKSYYEFSA NRRSIGLIDELEYLTNKASLNNSQKNLNTSKNTHLKALITLFKAFGGNLYLTKETK >gi|197325097|gb|DS990369.1| GENE 237 230496 - 231932 1906 478 aa, chain + ## HITS:1 COG:jhp0461 KEGG:ns NR:ns ## COG: jhp0461 COG0174 # Protein_GI_number: 15611528 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Helicobacter pylori J99 # 3 478 4 481 481 759 73.0 0 MQRPQIDKQAITQFFKECKENEVEFIDFRFTDIKGIWHHLSFSASAIDESSFEGIPFDGS SIPAWQPVDKSDMILIPDPVRYFIDPFTADTTMVVFCDVWDIYKNQPYEKCPRSIVKRAM QYLKETGIGDVAYYGPENEFFVFDSIKIKDSVNCQYYEIDTEEGEWNRDKEFEGVNMGHR PGTKGGYFPVAPVDSMVDIRAEMVKVLNQVGLETFVVHHEVAQGQGEIGVKFGDMLEAAD NVQKLKYVVKMVAHLNGKTATFMPKPLYNDNGSGMHTHISIWKEGKNLFAGNAYEGLSEM ALHFLGGVLNHARGLAAFTNASTNSYKRLIPGFEAPSILTYSAQNRSASIRIPYNSGEKA KRMEFRFPDSSSNPYLAFASLLMAGIDGIQKQSDPGKPMEVNLFELTLDEIREKGIKQLP HTLRHAVEEMLLDRAYLKEGNVFSEEFIQTYKKYKFETEIWPWEGRPHPFEFLTTYSC >gi|197325097|gb|DS990369.1| GENE 238 231969 - 232733 776 254 aa, chain + ## HITS:1 COG:Cj0984 KEGG:ns NR:ns ## COG: Cj0984 COG3022 # Protein_GI_number: 15792311 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 1 241 1 238 246 145 41.0 1e-34 MWFLFSPSEKKYLHHISETPSKEGFFKNFLAQNLQAVLQQYTHYLKTSNESSLQKLFGAK QIILEELALAQNLFTSPLLDSILRYNGVAYNALDFETLDKKSQSYLKERVLIFSNLFGIL RADDKIPYYDLKQGEGFLNFETKKLYRDNQEIFLQFLKKDKEVLDLRAGFYQKCLELPEE FLIYEPLFIKNGKVVSHYAKHYRGILLRECAKKTLASLKDLENMEIQGLRLLEIQTKPYK KSQKIFLTYEVKNA >gi|197325097|gb|DS990369.1| GENE 239 232786 - 233529 219 247 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 4 247 2 242 242 89 29 2e-16 MEFRGKNVLITGASKGIGAEIAKLLAQMGLKVWINYRSKPELADSLKSQIESNGGKAAVI GFDATKEEEFIAGIEAILSSDGELGYLVNNAGITNDKLSMRMKVEDFNGVLEANLTSSFI GCRETLKVMRKQGYGSVVNISSIIGEIGNVGQCNYAASKGGMIAMTKSFAKEGGSKAIRF NCITPGFIQSDMTEGLKEEIKQAYAANIPLGRFGSGKEVAGAVAFLLSEHSSYITGEVLK VNGGLYM >gi|197325097|gb|DS990369.1| GENE 240 233594 - 233827 510 77 aa, chain + ## HITS:1 COG:DR1942 KEGG:ns NR:ns ## COG: DR1942 COG0236 # Protein_GI_number: 15806940 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Deinococcus radiodurans # 1 73 35 107 110 82 58.0 1e-16 MALFDEVKAVVVEQLNVNEGEVKPESKFVDDLGADSLDVVELVMALEEKFDINVPDEDAE KISTVGDIVAYIEKAKA >gi|197325097|gb|DS990369.1| GENE 241 233876 - 235105 1666 409 aa, chain + ## HITS:1 COG:jhp0505 KEGG:ns NR:ns ## COG: jhp0505 COG0304 # Protein_GI_number: 15611572 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Helicobacter pylori J99 # 1 408 1 411 412 578 73.0 1e-165 MRRVVVTGIGMINSLGLNREDSFRAIVEGKCGIKTISSFDVSEFPVKIAAEITDFDPNSV MDAKEVKKADRFIQLGIKASREAMEDSGLVDSQNNLLVDGERFGISSASGIGGLGNIEKN SVINFERGPKRISPFFIPSALVNMLGGFISIDFSLKGPNLASVTACAAGTHGIIEAGKTI MLNEADRMLVVAAESAICGVGIGGFAAMKALCDRNDEPKLASRPFDAERSGFVMGEGAAA LVLEDYESAKARGAKIYAELVGFGESGDANHITTPAPEGEGAYRAMKAALKMANTEIDYI NAHGTSTKYNDYYETLALKKVFNGSVPPVSSTKGQIGHCLGAAGGLEAVISIMAMQKGIL PPTINQTTKDPDCDLDYIPNTAREAKIDAIMSNSFGFGGTNGVVIFKRV >gi|197325097|gb|DS990369.1| GENE 242 235190 - 236038 1018 282 aa, chain + ## HITS:1 COG:HP0557 KEGG:ns NR:ns ## COG: HP0557 COG0825 # Protein_GI_number: 15645182 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Helicobacter pylori 26695 # 3 281 29 307 312 422 73.0 1e-118 MHAIEILKKDLEKEVDKVYSHLSDYQKLQLARHPDRPYAMDYIHLILKDSIEIHGDRHFS DDNAIVCFLGKIEEQKVMIIGEEKGRGTKNKIQRNFGMPNPEGYRKALRAAKMAEKFQIP LLMFIDTPGAYPGIGAEERGQSEAIAKNLQEFSQLKIPTIAIVIGEGGSGGALAIGVADR LAMMEYSVFSVISPEGCAAILWNDPSKIENATQALKITPEDLKNAGLIDSIIKEPIIGAH RDKEGAANAIKEYFLNTLEEIKSDTNYLQTRYQKLMSYGSFQ >gi|197325097|gb|DS990369.1| GENE 243 236413 - 237240 797 275 aa, chain + ## HITS:1 COG:STM3588 KEGG:ns NR:ns ## COG: STM3588 COG2081 # Protein_GI_number: 16766874 # Func_class: R General function prediction only # Function: Predicted flavoproteins # Organism: Salmonella typhimurium LT2 # 1 267 127 392 398 131 30.0 1e-30 MEEEILNINQTTHSYCLQSPKDIYAFTHVILACGSEAMPKLGGSDKGLKLAKSLNLEILP TYPSLVPLKVISPKLQNLSGIKLKANITLMEANKALYQTYNDLLFTNYGISGFGVLDTSS YLYQAKNPKILLDLLPTFSTKSLENIFLNLIKAYPNKNATELLSGLLHPKLALHLTQNLK LQLTNTKTIKQTLYALKNLTLDSPSLYGFDNAEVSGGGVSAKEINTTSFECQKLKNLYII GEMLDIVGNRGGYNLAFAWASAWNCAKAIQNTLKS >gi|197325097|gb|DS990369.1| GENE 244 237255 - 238217 1042 320 aa, chain - ## HITS:1 COG:PM0026 KEGG:ns NR:ns ## COG: PM0026 COG3301 # Protein_GI_number: 15601891 # Func_class: P Inorganic ion transport and metabolism # Function: Formate-dependent nitrite reductase, membrane component # Organism: Pasteurella multocida # 10 318 8 319 319 169 38.0 5e-42 MNEIWGPENPAIVWHWLIAVYLFLAGLSSGAMITALSVEWMNPQKKAPWDAFERAGVLIA PLSIILGLVLLIFDLTKPLNFYRLLITYNLSSVMSLGVLLLLFYTPLSVIYAIMRYRGAL ERSFVGGLIRAFSGILDWLESHSLWFGRLVFALAGGVGVYTGFLLSAVQTFPLYNSPILP ILFLASGLSSGIAACICVGLLFFEKEVSQSTTKYLLTMDLRVIPIESLLIFALFVGLYFQ GGEKAIAAVTALSVGTWAWVFWLGVIGFSVVIPSVIALTALKNHAYKVNFILLNAFSIMI GVFALRMYILYAGQLHLGVF >gi|197325097|gb|DS990369.1| GENE 245 238214 - 238783 653 189 aa, chain - ## HITS:1 COG:STM4279 KEGG:ns NR:ns ## COG: STM4279 COG0437 # Protein_GI_number: 16767529 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Salmonella typhimurium LT2 # 3 187 36 221 223 192 49.0 4e-49 MAKYAMIHDSVKCIGCQGCTIACRSENAVPDGFFRLKVKMDGPHGVFPNLSFNYVRHSCE MCEHTPCVTVCPTHASFMDEDGIVDIDANKCVGCLYCVVACPYNARYVNPKTNVPDKCNF CKHTHLKQYGEPACVAVCPTDALIFGDLDDPSSPIFNILSTKPFITNKPHLGTKPKLFVI PNNKGGIEL >gi|197325097|gb|DS990369.1| GENE 246 238793 - 239134 465 113 aa, chain - ## HITS:1 COG:STM2065 KEGG:ns NR:ns ## COG: STM2065 COG0243 # Protein_GI_number: 16765395 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Salmonella typhimurium LT2 # 1 112 646 757 758 92 41.0 2e-19 MHTNGHTANVPWLNTLMNDNAVWLNQKVAKKMNLKKGDKIRITSPYGSQIGSVLPTIGIR EDTIFAYFGFGHTSKHNEISYGKGLSAGHLLKNTISPVAGNNVHTIGVKIEKV >gi|197325097|gb|DS990369.1| GENE 247 239471 - 241273 2297 600 aa, chain - ## HITS:1 COG:STM2065 KEGG:ns NR:ns ## COG: STM2065 COG0243 # Protein_GI_number: 16765395 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Salmonella typhimurium LT2 # 6 597 1 592 758 548 45.0 1e-155 MKEDELSIHRRDFLKGVGISSVALSMPGTLGAFSGKIEGESEFVPSICEMCSTRCPIEAR VDDGSKVFIQGNPYSIATGGAVCARGGSGVSQLYDPNRLVNPIMRVGERGEGKWKEVSWE EAYDYIAKKLNEIKEKYGAHTVAFASKTGPEQTFLNQFAYAYGSPNIFDHGNTCPSGYTT ALMSVYGNGGVSRDFANCKFMLNFGHNVYEGMVISYARGVTQALENGCKLVSLDPRFSVL SSKASEWIPIRPGGDTAFMIAFLHTLIFEELYDKKFVEKYTTGFDKLKESIKGYTPEKMA KECDIPADKIIALTRECASYAPHCMVDFGHRATFTPEEIEFRRSIAIANALLGNMEVKGG LYFPKGAALYNKIAGEKVAPIIKGSILPKIPEPNYPRIDFVDVKEGEFSKIPKNRGVYSK VYECILSGNPYALKGVFITRSNPVMTVAGADSVVEAIKKLDLFVCVDVYLSDTAQYADII LPESTYLERDEQFLANNGKNPGYQVRQKVVKTIGNTKPSWQIYLELAQKMGYGEAFPYKD IEDFRMKQGYEYPEAMFELKQKGLVSYGIPLLARDQESIKKFVEKYPNSKQFLDSDSEAS >gi|197325097|gb|DS990369.1| GENE 248 241738 - 242151 248 137 aa, chain + ## HITS:1 COG:HP0309 KEGG:ns NR:ns ## COG: HP0309 COG0388 # Protein_GI_number: 15644937 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Helicobacter pylori 26695 # 5 126 121 285 292 116 40.0 1e-26 MDSKGIVGKYCKIYLWGAETSRFKRGKNTPFSLDFDSFKVKVGLQICYEIGFSEGARILS LQGTEILRSQKISFAGNSQIINPKDSVLKRAKKNNQVIIKTINLQECQIQRKEIPYLKDL NLALVESIKDTQWQKIF >gi|197325097|gb|DS990369.1| GENE 249 242133 - 242363 253 76 aa, chain + ## HITS:1 COG:jhp0295 KEGG:ns NR:ns ## COG: jhp0295 COG0726 # Protein_GI_number: 15611364 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Helicobacter pylori J99 # 1 52 1 52 293 84 75.0 5e-17 MAKDILVGYRVNIDAVDGWLGSYGDEDSPDDISGGGFAGEIGVPRLLNLFRQKGDKMESQ NYKIEEALIIPDINKK >gi|197325097|gb|DS990369.1| GENE 250 242993 - 243439 373 148 aa, chain - ## HITS:1 COG:SA2335 KEGG:ns NR:ns ## COG: SA2335 COG0350 # Protein_GI_number: 15928126 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Staphylococcus aureus N315 # 18 145 39 165 173 137 49.0 5e-33 MKFLNQDTNLLPIKEICEKCDEVVLRQTREWLDEYFSGKSPKSKEISLNPSGSKFAKVVW ELLLKIPYGRVCTYGELAKEVARITHKNKMSAQAIGGALKRNPIPIIIPCHRVIGANGKL TGYAGGIKRKIALLECEKADMVNLYHFE >gi|197325097|gb|DS990369.1| GENE 251 243564 - 244379 679 271 aa, chain - ## HITS:1 COG:Cj0250c KEGG:ns NR:ns ## COG: Cj0250c COG0477 # Protein_GI_number: 15791621 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Campylobacter jejuni # 1 264 152 419 436 191 42.0 2e-48 MGVFTSAVVSGILLGSIVTLAVNMSFTQEEIKEYAWRIPFILGGIFGIISLFLRKFLNET PVFQEILALRQTQNFPIKEVFKTSQLGVVKSFFSTWILTGCVVISVLLTPNLLSKVFELS PISKVVYQVVAIFFLASGNVFAGVLSDKIGIKNASVIFGAALMGFALCFYYMLGYGKELV QYFDVILLLYYLMAFSAGLMVFTPIIMVQSFQPSIRYSGISFAYNLSYALFGGLTPIFFA WATESGGILYLGYYMMLLGILAILIGRVHKG >gi|197325097|gb|DS990369.1| GENE 252 244645 - 245010 401 121 aa, chain - ## HITS:1 COG:jhp0871 KEGG:ns NR:ns ## COG: jhp0871 COG0477 # Protein_GI_number: 15611938 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Helicobacter pylori J99 # 11 110 1 100 452 147 78.0 4e-36 MAKMQLKRSEIKILGLSSLGGMLEFYDFIIFVFFTNVISSLFFPSTLSPFWTTMNTYGAF AAGYFARPLGGIIMAHFGDKIGRKKMFMLSILLMVIPTFALGLMPTFESIGYAAPIILLA S >gi|197325097|gb|DS990369.1| GENE 253 245078 - 245701 619 207 aa, chain - ## HITS:1 COG:RSc2231 KEGG:ns NR:ns ## COG: RSc2231 COG1611 # Protein_GI_number: 17546950 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Ralstonia solanacearum # 10 198 109 292 317 181 43.0 1e-45 MDKILENYQEISKSFEILKQYHNVVTIFGSARIDSAHKGYKKIQKLACKLGEMGYSIMTG GGPGIMEAANKGLLQAKEKNPQIVSIGLNIQLPHEQHMNPYVEVPLVFENFFSRKLVFSH NSTAFIVAMGGFGTLDELSEVLVQISTGKHKKIPIILYGRDYWKGLIKWFKNRLLKEGMI SKEELALLSFADSPKEVLKILKKQKID >gi|197325097|gb|DS990369.1| GENE 254 245701 - 246027 390 108 aa, chain - ## HITS:1 COG:no KEGG:WS1344 NR:ns ## KEGG: WS1344 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 8 108 15 115 123 115 57.0 5e-25 MSLSKACLFAEDSFITQVEYGKMLYENPRGIGCVNCHGEKGEGRLIAHYSHKNKDRELKG VRINHLGFQEFLKSLQESKKVMPKYYLTKSEIQAIYQYLQSKKGNKGS >gi|197325097|gb|DS990369.1| GENE 255 246150 - 247007 1137 285 aa, chain + ## HITS:1 COG:BS_folD KEGG:ns NR:ns ## COG: BS_folD COG0190 # Protein_GI_number: 16079487 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Bacillus subtilis # 3 277 5 279 283 309 55.0 4e-84 MQILDGKALALEIQHTIKQEVQELSKQQITPGLAVILVGDDPASQSYVNMKAKACSQTGI YSTTHKMPESITEEALLQTISMMNENPNIDGILVQLPLPKHINTTAILEAISPKKDVDGF HPFNMGRVFANLDGFIPATPMGVITLLEHYKIPIEGKNVVIVGASNIVGKPLGALFLNKN ATITLCHIYTQNLAEHTKKADILCVGVGKPNLITQDMVKEGAIVVDIGITKLENGKIVGD VDFDNVAPKCSYITPVPGGVGPMTIASLLQNTIKAAKLRAQKETK >gi|197325097|gb|DS990369.1| GENE 256 247004 - 247795 748 263 aa, chain + ## HITS:1 COG:jhp0523 KEGG:ns NR:ns ## COG: jhp0523 COG0681 # Protein_GI_number: 15611590 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Helicobacter pylori J99 # 1 257 1 281 290 281 51.0 1e-75 MKFLNKIYHFINSWTGTIIIVLAVIFFVAQAFVIPSGSMLNTMLIGDNLFVKKYAYGIPT PTIPWIEVKILPDFNNNGHLIEGERPKRGDIVIFRYPLDPKIHFVKRNVAVGGDEVIYTK EGLWVHFKEENPYSQNPTKTLQYGGKTFIYDPYLQKHPGVHYDKSGVDSFVLLQNTQGIA MEPIFLENDELGFYAKIAEDEFFMMGDNRNNSSDSRFWGSVAYRYVIGKPWFIYFSWDDN FNVRWDRIGKSIESLEKKMQDNQ >gi|197325097|gb|DS990369.1| GENE 257 247798 - 248481 720 227 aa, chain + ## HITS:1 COG:jhp0522 KEGG:ns NR:ns ## COG: jhp0522 COG1994 # Protein_GI_number: 15611589 # Func_class: R General function prediction only # Function: Zn-dependent proteases # Organism: Helicobacter pylori J99 # 2 227 6 231 232 152 46.0 7e-37 MLDLPSLYTIPLMIIALLLAIIGHEIMHGYVAYKCGDNTAKMAGRLSLNPIVHIDLVGSI LIPSLLFIANAPFLFGWAKPVPVRMDRVIYQGGYFAALLVSLAGILYNLALAFLAVSFFY AFNGGILSGFFEYFSNPQLPYALILFFFLQLIIYNIILAIFNLLPIPPLDGSNALAYLGL VFKNDFFARIFNKIHPIVGMIVLILILSTPLSAILSMPVNFILQWLL >gi|197325097|gb|DS990369.1| GENE 258 248492 - 248917 639 141 aa, chain + ## HITS:1 COG:jhp0521 KEGG:ns NR:ns ## COG: jhp0521 COG0698 # Protein_GI_number: 15611588 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Helicobacter pylori J99 # 2 140 9 145 151 155 53.0 2e-38 MKFFIASDHAGFELKESLIQILEKMGYEVTNLGPVNNDRVDYPDFANLLCQEVLATPQSL GILICGSGIGMSIAANRHKGIRAALCNEPYGATMARAHNDANVLCLGARVVGLGMAECIL QSFIKGEFEGGRHTQRVEKLQ >gi|197325097|gb|DS990369.1| GENE 259 248926 - 249264 454 112 aa, chain + ## HITS:1 COG:no KEGG:HH1369 NR:ns ## KEGG: HH1369 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 5 112 10 117 117 149 82.0 3e-35 MAQFAQWLFLTAFILFVLFMIVKTFFYKSVAQKEEKNSAIMKLTLQEAEILIRKHQLQLQ RALGNIDILTDEITALRNEVKTLKQRNSQYRVETEKYKSKIKDLEQKIEALL >gi|197325097|gb|DS990369.1| GENE 260 249280 - 249834 814 184 aa, chain + ## HITS:1 COG:Cj0927 KEGG:ns NR:ns ## COG: Cj0927 COG0503 # Protein_GI_number: 15792256 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Campylobacter jejuni # 1 184 2 182 182 215 59.0 4e-56 MELTQQEKNILLDSIREIKDFPQPGIIFRDITTLLNNKEAFNLLMDFLTKRYQKYNLDYI AGIESRGFIFGAALAHSLGVGFVPIRKKGKLPYTTISEKYSLEYGFSEIEIHIDAFKNEN LEHTPKVLLIDDLIATGGTAYAAANLIQKGGATCIEVCFIINLESLKGSKELEKIIPVFN VLDL >gi|197325097|gb|DS990369.1| GENE 261 249849 - 250718 956 289 aa, chain - ## HITS:1 COG:slr2043 KEGG:ns NR:ns ## COG: slr2043 COG0803 # Protein_GI_number: 16329702 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Synechocystis # 21 287 51 334 338 176 37.0 5e-44 MKKVLLFLCLMVGSLVAKPIIAVSIPMQAEFIEKIAGEEYDISVLVEKGTNPHDFEPKFS SIKEVNEAIAYFPIGVEFEASWLKRFLDQNPNMKVFPSNAGIKTINFAHHSKDEHEHHEH HEHHEHGEHGDTHIWLSVANAKQIATNIYKALVELNPKGDYSKAYEALLNQIQQTDTQIK AALKDVPKHQKFVVFHPMLGYFAKEYDLEEISIEVEGKSPKMKEMMQVIDTIKKENLQII FAQPEFSTKAAEFIAKESGAKLGYFSPLETPWAENLIRFAEALKEANKN >gi|197325097|gb|DS990369.1| GENE 262 250881 - 251903 1085 340 aa, chain - ## HITS:1 COG:no KEGG:WS0154 NR:ns ## KEGG: WS0154 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 338 1 336 336 197 35.0 5e-49 MKFKYYISALFVFIVLLGLYVYTLTGESYTYQIPFSIHSVVLPVAVWMIIPVVIFFIVVA FLEVGGAYRMWRKRTKYKNDYKILLTQIENQLLSREMPFKQPTMNRYKKLAILLSNLTFD VKEGAPIKSGEAKLDEIIETLGDLKRGEYVNLKKFSPGEKCPFLKQNIFNEIHSDEKFAM EVLRKQSYSDEFKQEAFKKLLEAGDFKDVRRFVGEVKFNKDLAGVVLGMCYAQKMDFSDE EVSKLCMDVGYSKEDYLHLAQKMKECYEPAKWLELFEFLANKDENAELAYFYVLLELEMI DEAKERLNSHPQNELLKIRAYLDLKDLGKKYPLELFLLDK >gi|197325097|gb|DS990369.1| GENE 263 251900 - 252250 412 116 aa, chain - ## HITS:1 COG:Cj0125c KEGG:ns NR:ns ## COG: Cj0125c COG1734 # Protein_GI_number: 15791513 # Func_class: T Signal transduction mechanisms # Function: DnaK suppressor protein # Organism: Campylobacter jejuni # 2 113 5 117 120 82 45.0 3e-16 MELDAFKKTLEEKKQAILDNNFVHQKSMENLRGVSLDEADEAAMSMKNNLDGLIFERHNE ELEYIERALEKIEEGVYGICEMCDEPIGIQRLRAKPHARYCIVCREIVEKDLKGKK >gi|197325097|gb|DS990369.1| GENE 264 252285 - 252749 371 154 aa, chain - ## HITS:1 COG:HP0949 KEGG:ns NR:ns ## COG: HP0949 COG1576 # Protein_GI_number: 15645565 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Helicobacter pylori 26695 # 2 154 1 150 150 109 45.0 1e-24 MIKVFVYYIAKTKDLSDSLCEEFIALSAGVGVKMEFVNLFSKSIKEGQKQDAKEAQKSYT KEFLKVSKNQAYKIALSPNGKSIDSMEFAKNLENKGEIAFFIGGAYGLEEAFLNQCQCVL SLSPLTFSHKVAKVVLSEQVFRAFCLINNHPYHK >gi|197325097|gb|DS990369.1| GENE 265 252742 - 253599 869 285 aa, chain - ## HITS:1 COG:jhp0884 KEGG:ns NR:ns ## COG: jhp0884 COG0777 # Protein_GI_number: 15611951 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Helicobacter pylori J99 # 2 278 1 278 289 414 70.0 1e-116 MVGFVDFFKTFKKENQERATPKEAPSHWVKCPSCNALMYYKEVIAQYYTCPKCNFHMRIG LQDRIALMCDDGSFIEYDKDLSPTDPLDFVDKKSYKKRVEEYQKKCGRPSSIISGECRIE GIPVQLALFDFNFMGGSLASVEGEKIVRAINRSVEKKQGLIIVSASGGARMQESTYSLMQ MAKTSAALNVLSEAKLPFISILTDPTMGGVSASFAFLGDIIMAEPGAMIGFAGARVIKQT IGADLPQGFQTAEFLLEHGLIDMIVQRREMKQSIARILRYLNAND >gi|197325097|gb|DS990369.1| GENE 266 253681 - 254439 567 252 aa, chain + ## HITS:1 COG:aq_1980 KEGG:ns NR:ns ## COG: aq_1980 COG4121 # Protein_GI_number: 15606976 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Aquifex aeolicus # 5 196 51 241 308 95 34.0 9e-20 MNIQTSDKSFTLFNQTFQEHYHSTKDGALKETLHKHIFPSFAYFKNKQKLRILDICFGLG YNTLCAIKYASSYGIQSLEIHSPEMDSCLLESLSSLTYPQDLDLEILNSLTQNHFYKSKN LEVFLHLGDAREILKSFQKSFFDIVFQDAFSPAKNPLLWTYEYFKTLFLLTQKDCILTTY SQNSAMLYSAFLAGFKPFKLTQKYTRDSILFTKLESTPTLKLENALAIKPINLAHKISTN RDLKGLYDSSCK >gi|197325097|gb|DS990369.1| GENE 267 254449 - 255510 1055 353 aa, chain - ## HITS:1 COG:AGc2013 KEGG:ns NR:ns ## COG: AGc2013 COG1566 # Protein_GI_number: 15888430 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 18 351 39 372 385 243 43.0 4e-64 MKKRLQYSWLPSKPKLYVIVLTTFGILAGVLSILYAWQLSPFFLNVVVTNDAYIQSKTTL LSPQVSGYITEVYIKDFALVKKGQPLFQIDNRIFTQRVKEAQANLQSAESALLAYEENYR LYEANIAEKEAQIKSVEANLKNAQAENDRATTLIKNKALSKRDYDNAKAQFLSLQANYVQ AKAQFQKAIQELEAHKTTKSSLEAGVKRANALLELALIDLDNSVIKAPVDGQLGEILAHI GQFVSQESALAYIVPQTHWVVANIKETKMDKVALGQKVHFSVDALSGKEFSGVVEEISPA TGSEFSPIRVNNATGNFIKVIQRIPVKIKIDSTNERLEELRAGMSVVVEIETK >gi|197325097|gb|DS990369.1| GENE 268 255510 - 257150 1627 546 aa, chain - ## HITS:1 COG:AGc2011 KEGG:ns NR:ns ## COG: AGc2011 COG0477 # Protein_GI_number: 15888429 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 14 509 49 565 583 164 26.0 6e-40 MPLKFEKHLKPNEMPALWGSPAKPLFPNKIRFFYGIGFIVALITASLQNNLIIAYITYLQ GDLGLTPTQGACVTAAYYMGNVWMTIVLFRMRQHFGLKVFFICIFVGLLSAQLLELLFSN FAVVVFARFIGGIVGGGINVLTIFYALEMLAPKQRHLLFPISIGLIQIGSALARFIVAYF SVGDYPHLMIFFEAGICLITFCVFLLIELPPSRTDRAFFPEDSTIFFYALGTALCCLIFS TGNIIWWHHDFIAYGLCIALICFGAFFIGEFFKKRPFVSVGFLANIQLIELALAAAFVRM CLAEQSTGATGLFHDVLGFSDYQLIGYYGILTLGALCGGVACLFVYHFERSHGMILFASA LIPLGSFLSTNLSVDMLPSSLYFGQFLIAFASVFFIGPLMVNGIVLGLARGANQLITFAA IFTFSQGVFGLLGSALIGYFVRLQTTQHTQNLLNYTSHIYNFQGHLNADLSNQIARHAGV LAYGDLFFTIGMIGSFIFVILATRYVYFKFTTNSLRRELDIMRNRTIKSNIKTQKILENS NFSRRG >gi|197325097|gb|DS990369.1| GENE 269 257676 - 258851 1357 391 aa, chain + ## HITS:1 COG:HP1026 KEGG:ns NR:ns ## COG: HP1026 COG2256 # Protein_GI_number: 15645640 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Helicobacter pylori 26695 # 10 385 9 390 391 452 60.0 1e-127 MKELAYNKRPKNFQQFIGQKHIFGENSPFMRLLKSGEIPHSFFFGPPGSGKTTAARLIAN ELDYPFYSLNATSFKSEDLRNILKQHQNTLQKPLIFIDEVHRLNKAQQELLLPIMENHQA LILGASMENPFFSLINAIRSRSFVFEFHRLNKEELAQILEEYSLEDSIKDFLIGTSGGDA RAMLNLLDCALSTKMPLTLELLKSIRPHSLNSSASDSDTHYNLISAMIKSIRGSDENAAI YYLARLIEGGENPEFIARRLVILASEDIGNANPNALNLANSTLQSVAKIGYPEARIILSQ CAIYLCASPKSNTSYEAINAALEYVRKNPNEPIPEHIQQFHKNYLYPHNFGGWVKQKYLL KNLEFVKWQPKGFEKTLKEWLDKIRGIKTKE >gi|197325097|gb|DS990369.1| GENE 270 258956 - 259240 423 94 aa, chain - ## HITS:1 COG:Cj0333c KEGG:ns NR:ns ## COG: Cj0333c COG1145 # Protein_GI_number: 15791701 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Campylobacter jejuni # 1 92 1 92 94 118 73.0 3e-27 MAVKITDICIACGACIDECPVEAIVDDDDNPNNDGCYFVYNNKCVECVGHNDEPACASAC PTDGCIVWDAVVDSQPHRDDIGEDKRTAHVPVVE >gi|197325097|gb|DS990369.1| GENE 271 259373 - 259939 567 188 aa, chain - ## HITS:1 COG:jhp0794 KEGG:ns NR:ns ## COG: jhp0794 COG0241 # Protein_GI_number: 15611861 # Func_class: E Amino acid transport and metabolism # Function: Histidinol phosphatase and related phosphatases # Organism: Helicobacter pylori J99 # 4 182 6 171 174 131 40.0 8e-31 MKQKVVFFDRDDVVNLEDAPYGYEIEKFYFAPFFMELFLELKKQDSLCFLVTNQSGIHRG IFTQKDFETLSAFMQNCIVSCLTIPLRQSGFVPKNIGFDGIYFCPHTKEENCSCRKPKPQ MLLQACADFGLDLSQYDSYILGDKDTDMMAGLEAGVQTRILVGANQAPHATHRVSNLKEA LELFQSIK >gi|197325097|gb|DS990369.1| GENE 272 259936 - 260496 321 186 aa, chain - ## HITS:1 COG:BMEI0057 KEGG:ns NR:ns ## COG: BMEI0057 COG1738 # Protein_GI_number: 17986341 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Brucella melitensis # 7 176 12 207 223 76 31.0 2e-14 MSKKTMSFSVILVSVVIFTSLIVASNYLVQFPVNDFFTYGAITYPFTFLLADILAERYHR DEVLKVVRIGIFCAFIPSMFLAEFRIALASVSAFFFSQQADVYIFYWLKSKFPRLWWLRS AGSTAFSQFVDTMIFFHIAFLFVMPWQNVLMLVFGDYLIKFCLGLLNTPFFYLFAIRLQK FLGVFR >gi|197325097|gb|DS990369.1| GENE 273 260828 - 261085 439 85 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|224418786|ref|ZP_03656792.1| 30S ribosomal protein S18 [Helicobacter canadensis MIT 98-5491] # 1 85 1 85 85 173 100 7e-42 MAEKKRYSKRYCRYTESKIEFIDYKDIDMLKHSLSERYKIMPRRLTGNSKKWQERVEVAI KRARQMALIPYIVDRKRVVENPFKI >gi|197325097|gb|DS990369.1| GENE 274 261097 - 261579 597 160 aa, chain - ## HITS:1 COG:HP1245 KEGG:ns NR:ns ## COG: HP1245 COG0629 # Protein_GI_number: 15645859 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Helicobacter pylori 26695 # 1 160 1 179 179 165 51.0 4e-41 MFNKVILVGNLTRDVELRYLPSGAALARLGLAINRRYKKQDGTQAEEVCYIDANLFGRTA EVANQYLKKGSQVLIEGRLVLESWTDNTGTKRSKHSITAESMQMLGQRQNANENVGYGES GYASGYEQQEVYQKPSPQAQKPQKEPDLPVIDINDDEIPF >gi|197325097|gb|DS990369.1| GENE 275 261589 - 262017 716 142 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|224418788|ref|ZP_03656794.1| 30S ribosomal protein S6 [Helicobacter canadensis MIT 98-5491] # 1 142 1 142 142 280 100 5e-74 MRFYETMFVVKPTLTQEEITQKIDFYKAAILNNGGEISATLDMGMRNLAYEIKKNKRGYY FVIYFKAEPKLVLELERLYRINEDILRFIVIKYDSKKEQKAWEVLVDRAIHNKKAAPLKE AREAKETAPKEEAKSEEASQES >gi|197325097|gb|DS990369.1| GENE 276 262095 - 263096 1143 333 aa, chain - ## HITS:1 COG:HP1247 KEGG:ns NR:ns ## COG: HP1247 COG1466 # Protein_GI_number: 15645861 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Helicobacter pylori 26695 # 1 332 1 338 340 147 30.0 3e-35 MYKRELDSKLASNAEIRAILLYGEDSFLVGYYGEKIAQEILKKDCEKNSFYFSEFDFNSA IACFSQGSLFGGESLVWIKADKKIPKKQLDSLIAALEKNGSGYLILEFYQAENKSAAEYS LDCKALAGSFKGKNIYEARFFSLNAGESFGILREYANGFGLKISDFSLRKILEQQNYDLG LSVAELRKYTIFDSEINAENIENLGYSLGSIEYEEILELMFDRKPYLNLLEKFLEQGFEE IPLIAEIQKYFFQLFLFSSHIKLYGNATSEEVLGYKLPVNLLEKKKRRAIQIGQEKFLKI FCVLNRWHEDSIRGITKGNGFLRALIKIQAILE >gi|197325097|gb|DS990369.1| GENE 277 263096 - 265246 579 716 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 22 666 38 712 730 227 28 4e-58 MIEFVRLLEGGIPLTLEVAPEFKKTINLLQQYGAIEKKQARYFLGKKFQIGRFEPTKKGY GFVCSLFDSSQKDWLVEKNHTQRAQKGDIVLAKVITKAKQGKIKAKILQVLQHRVQNVVC YLEKYKLDCIAISIPNEVAYKIKASQKSLKALPSQTILKLNPQNGEVLEILGTLDDPKID EIIALNLYNKRETFSLQAELQAQSFKEVQISHFKERENLTHLPFCAIDPVGAKDHDDAIF YDQDNAMLYVGIADVSHYVTPNSPLDEEAKSRGFSIYFPHKSIPMLPRTLSENLCSLKEG KNRLAMVWKIRLHKRTKAVLNSELFAAIIKVKQKLNYEEVDAFFETQKSTTIKKPLQTML LFLKELTQKLRKNRLKYGFDFIGDGVELELDKNLELRGLSFESQTLSHQLIEECMLLANV ESAKLLEQKNAQNDNHLKLGIYRIHPQPKMEKLNELFGELRLLGIWRDKAIPKTKMALHK AILEIQSIAKRAKIQREVDKLIIKSMQQASYASYNVGHFGLGFEAYSHFTSPIRRYSDLI LHRILKDKVALNENWQYKDSLPILCDQLSLQEREVAQIELDFQDRKFARYLSKHLGQTYD GIIVSEKSPLVVALSDFPLMGARVITLNGQGVKYQKARIQILEVNLATAKVYGRMVKVFA EGFGGENLRISEYISQKRQKQAIKNKELARREALRIAKKNKQRKQKKIPRKRKKSR >gi|197325097|gb|DS990369.1| GENE 278 265243 - 266061 713 272 aa, chain - ## HITS:1 COG:Cj0248 KEGG:ns NR:ns ## COG: Cj0248 COG1639 # Protein_GI_number: 15791619 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein # Organism: Campylobacter jejuni # 1 234 5 243 285 145 30.0 1e-34 MKDLIISEIDSLPPLPQTISELQKACLREDVSVREIASIIETDPLLTANIIKTANSPLFG YSRTINSVSQAVMLFGIYTAKGLAIASAIKSQLEMDLSPYGLSVVDFTKASNLKGIFLSK WYQSKNPILHSLISCALLIHIGMVVLANVLRSTNKEKEFEKKLKSMSLVEAERSVLQVDQ IEILEMLFEHWHFEETMVQIVHYLGKSEMSKELECYIYPLRVANFLINPYSIASKEQIQE ALKYVSLYKLDEEGFKRTLLEMGFVENLSEFE >gi|197325097|gb|DS990369.1| GENE 279 266184 - 267182 1149 332 aa, chain + ## HITS:1 COG:jhp0793 KEGG:ns NR:ns ## COG: jhp0793 COG0451 # Protein_GI_number: 15611860 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Helicobacter pylori J99 # 1 327 1 323 329 387 61.0 1e-107 MQYIDDTLAGKRILITGGAGFIGSNLALYFQKYHPQSQVVVFDCFRNGETFENGNPKSLG HFKNLLEFKGEVIAGDINNKDDLQRLEDRNFDYIFHQAAISDTTVLNQELILRSNLNAFK DLLDLSIRSGAKMIYASSAGVYGNTPAPNSIGNGEIPENAYGFSKLMMDHLASKYLQENP SLHIVGLRYFNVYGENEFYKGKTASMILQLGLQALQNKKVRLFKMGEQKRDFVYIQDVIQ ANVKAINAKKSGVYNVGSGKSRSYNDIVACLKKELGEFEVEYFDNPYSFFQTHTEANIVL TKEFLGYEPRFSLEIGIKNYLDQIKAIHAKGY >gi|197325097|gb|DS990369.1| GENE 280 267183 - 268706 1220 507 aa, chain + ## HITS:1 COG:jhp0792 KEGG:ns NR:ns ## COG: jhp0792 COG2870 # Protein_GI_number: 15611859 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase # Organism: Helicobacter pylori J99 # 5 506 4 459 463 426 51.0 1e-119 MKPNILVIGDLILDHYIWGKCERISPEAPVQVIEVAKETLNLGGACNVANNLIALDCNVF ICGMAGADKAGEDLKNKLESLHINTQGIHYSKNRPTTQKSRIIASHQQVVRVDREDKSPI DKEAEQFILESAKKLIKHSKIHCIVLSDYQKGVLSQNLTQSLIQLACDSKLKILVDPKGK DYSKYQGATLLTPNKKEATEATGIQIKDDSSLLLALQKLKEICHLEYSLITLSEDGIGIL RNGLHKIPTIAKEVFDVTGAGDTVIAALAFMLAQEEDILSSLHFANAAAAVVVGKVGSAT ANKQEILNYLRDNHLLDSLSKEIPKILNTSIIDSKFLPHLQRISQKQKPRNLHSKFIKPD DFALFLDFLQTLKSQDFKTIFTNGCFDILHFGHISYLNKARELGDLLIVGLNSDSSIKRL KGNERPINSQEDRAALLCALECVDFVIIFDEDTPLNLISQIKPDILVKGADYANKKIAGS DLVKEVRLIEFVEGKSTSATIKKIKKE >gi|197325097|gb|DS990369.1| GENE 281 268709 - 269278 752 189 aa, chain + ## HITS:1 COG:HP0857 KEGG:ns NR:ns ## COG: HP0857 COG0279 # Protein_GI_number: 15645476 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoheptose isomerase # Organism: Helicobacter pylori 26695 # 5 184 6 186 192 213 60.0 2e-55 MQAHILNEIQSHLQTAQKMSSLVDSIQEAANLAITTLQNGGKILICGNGGSAADSQHIAA ELTGRYKRERKGLSAIALTTDTSALTAIGNDYGYDFVFSRQFEALAKKGDLLWGISTSGN SINVLNAMRSAREMECKILGFSGKDGGEMKKWCDLLLLSPSDDTPRIQEMHLLMAHIICD LIEKMTMKA >gi|197325097|gb|DS990369.1| GENE 282 269317 - 269721 464 134 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|253826682|ref|ZP_04869567.1| ## NR: gi|253826682|ref|ZP_04869567.1| hypothetical protein HCAN_0022 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0022 [Helicobacter canadensis MIT 98-5491] # 1 134 1 134 134 246 100.0 4e-64 MQVNLTNEMLKILQTSGIAANLADLTLDKNGIYFSLPNQTTTKVMLYQAKIQESLFRTQG EPLVHLSACDESLKNYDNADFLAIIRTDMQFFLSIYSHKIQTKIFNQKPLNLCPHCHNLL HHSYQDNLQLFFEK >gi|197325097|gb|DS990369.1| GENE 283 269725 - 270507 981 260 aa, chain - ## HITS:1 COG:aq_1329 KEGG:ns NR:ns ## COG: aq_1329 COG0476 # Protein_GI_number: 15606532 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Aquifex aeolicus # 2 249 3 254 271 255 52.0 7e-68 MSFTQEELERYNRNILLSGVGEAGQQKLKNAKVLVVGAGGLGSPVLFYLAAAGVGEIGIC DGDNVDLSNLQRQILHTTKDLEKNKALSAKEKLESLNPEIKINIYKERLNVSNILGIIKD YDIIVESTDAFASKFLVNDACVLGGKILVRASTLHFCGQAMSIKPKESACYACLFDSPPQ GEVPTGASVGILGAVAGLFGCIEANEVIKIITGVGKPLFDQFLTCDVRDMEFRKINIKRN LKCRVCGENGIKNLDLDRYQ >gi|197325097|gb|DS990369.1| GENE 284 270736 - 271068 449 110 aa, chain + ## HITS:1 COG:FN0260 KEGG:ns NR:ns ## COG: FN0260 COG0640 # Protein_GI_number: 19703605 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Fusobacterium nucleatum # 2 109 17 120 125 112 53.0 1e-25 MQELDSKRLLNISKKLPKEELLYELAEFFKIFGDSSRIRILSLLQQEKLCVGEISELLNL SPSAVSHQLRILRQARLVRYKKIGKEVFYELDDDHIEKIFEQGLEHIQEM >gi|197325097|gb|DS990369.1| GENE 285 271082 - 273037 2189 651 aa, chain + ## HITS:1 COG:PAB0626 KEGG:ns NR:ns ## COG: PAB0626 COG2217 # Protein_GI_number: 14521140 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Pyrococcus abyssi # 16 651 72 689 689 515 42.0 1e-146 MANCCNTCTNTQNTIHKKSDFQNKLAQSLFYFSIILYLIALSGDFGIFNFHLNASILYGF YLFCYFALGYGILKKALIGFYKREFFNENSLMALASIGAWAIAQGAEAVAILLFYRIGEA LEDLVVEKSKKSIRTLASIKIEQAHLFKNENIENIDPKNIQEGDILVIFAGERIPADGII IKGEGSVDNSALNGESLPQNVKVGDSLFSGSINLDSILHLKATKSYENSTFSKIIKLIEE GSAQKSRSEEFITKFARYYTPIVTLLAFSIILFPTLYFWAFGQMELIETLKIWLYRGIIF LVVSCPCALVISIPLTFFASLGKASKEGILIKGSSYIEALKDANAIIFDKTGTLTEGKLI IKKINAYKNYDEKFILKIAQLLESHSNHPIAKAIINYNNEINLQEDLKKLSNLKESSGGG VSAMLENKIIALGNARFIQSLTKQNLPKDSSLKCQIFIAYDGETIGDIILEDAIKKEAKE VIEKLKEEHLEEIYILSGDKESVVQEIAQNLGIKHFFASLLPNDKVNHLKAILQTQNQKN KKVIFVGDGINDAPSLALCDIGIAMGKTGSDVALEGADIVIMNDDLRKIPKVLQIAKKTR QILWQNIFLALGVKIGIMILGAFGATNLWIALFGDVGVALLALLNAIRAIR >gi|197325097|gb|DS990369.1| GENE 286 273154 - 273351 258 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418799|ref|ZP_03656805.1| ## NR: gi|224418799|ref|ZP_03656805.1| hypothetical protein HcanM9_05923 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0018 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0018 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 65 1 65 65 96 100.0 6e-19 MKVVFEKDEENVNLKNIFILSIKSYIKVLYQQGMSKTEIKQKIYLESKDFNHHHDLILAN YKSFN >gi|197325097|gb|DS990369.1| GENE 287 273683 - 273976 395 97 aa, chain + ## HITS:1 COG:no KEGG:BpOF4_07515 NR:ns ## KEGG: BpOF4_07515 # Name: smrA2 # Def: small multidrug resistance protein # Organism: B.pseudofirmus # Pathway: not_defined # 2 73 52 123 123 61 48.0 1e-08 MLMILATKRVEVSIAYAVFVGIGAAGVALNEILIFNAPTNPLQLTLIVLLILSVIGLKLV SKESDKQDIKAIEEISKDLGINELNNQLETLNSKDIK >gi|197325097|gb|DS990369.1| GENE 288 273973 - 274287 411 104 aa, chain + ## HITS:1 COG:Cj0309c KEGG:ns NR:ns ## COG: Cj0309c COG2076 # Protein_GI_number: 15791677 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Campylobacter jejuni # 1 104 1 104 104 87 51.0 6e-18 MSWVFLILAGIAEIFGVICLKNFALKGKKIYLLGIILLFILSLSLLSLGLREIPMSIAYA IWTGIGTAGGVLVGIFLYNESKSFLKLFFVTCIVVCSVGLKAFS >gi|197325097|gb|DS990369.1| GENE 289 274317 - 274904 662 195 aa, chain - ## HITS:1 COG:jhp0241 KEGG:ns NR:ns ## COG: jhp0241 COG3334 # Protein_GI_number: 15611311 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Helicobacter pylori J99 # 1 180 1 190 222 97 40.0 1e-20 MKKIAFFSFCLTSFLWSVEGSGIVDCNIIFEQRKAEILREIEKIDEQQQALQALQSATQN VLDQKDADLKKREAALAADKKELEQREEAIKKLLEKNEEILAEIKNTTQSKIGTTYAGMK DSKSAAILENLPESEAAMILFSLDTKVMSKILAKMNPQKAANLTQIIQKGPPFETQDAKQ EIQGATEVNSQNNEN >gi|197325097|gb|DS990369.1| GENE 290 274901 - 275101 252 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418803|ref|ZP_03656809.1| ## NR: gi|224418803|ref|ZP_03656809.1| hypothetical protein HcanM9_05943 [Helicobacter canadensis MIT 98-5491] # 1 66 32 97 97 80 100.0 3e-14 MGELALLKRQKQELQDYFKAQNIEYEKAKYLDGLEIKKNLEKAKKQESKDLDEISVMLYA NHKEQK >gi|197325097|gb|DS990369.1| GENE 291 275875 - 276507 491 210 aa, chain - ## HITS:1 COG:no KEGG:WS2057 NR:ns ## KEGG: WS2057 # Name: hisZ # Def: ATP phosphoribosyltransferase regulatory subunit # Organism: W.succinogenes # Pathway: not_defined # 1 210 3 212 286 213 48.0 4e-54 MILSHEIPQDSKLYFGKSAKIKRDFENLVSEILYQNDYEEILTPTFSYLQYQRDMQSREF VRISNPFNHQITLRSDSTIDTIRLLAPHLKENNTKKKWFYIQPIFTYPTKEIHQIGVENL EKCDILPFIQMSLKILKSINIKPFLQLSNVKIPEICAKEFGLSLEVFEKNDVGAIQGTNE FLAELLEVQDKDSLKTLLIKAPESLKKELD >gi|197325097|gb|DS990369.1| GENE 292 276631 - 276948 404 105 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418805|ref|ZP_03656811.1| ## NR: gi|224418805|ref|ZP_03656811.1| hypothetical protein HcanM9_05955 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0011 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0011 [Helicobacter canadensis MIT 98-5491] # 1 105 1 105 105 151 100.0 1e-35 MAFKINTLVSLTPKEPQKPQTTNPPKPQENQQTSTQNSNPIKKPLGNLDSTLPQSSNSAF SSLFLSQKDWLQKEFGITDETIKDLLEESQQENYLADFLWKFQKL >gi|197325097|gb|DS990369.1| GENE 293 277042 - 278319 1822 425 aa, chain + ## HITS:1 COG:HP0822 KEGG:ns NR:ns ## COG: HP0822 COG0460 # Protein_GI_number: 15645441 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Helicobacter pylori 26695 # 1 423 1 420 421 484 61.0 1e-136 MKKQLNIGIIGLGVVGSSVAKILKENQDLIAARAGCQIVIKKGVVKNLSKSREIFDFPIT NEAESILEDPEIDIIVELAGGIQEPFKIAKKALYHSKAFITANKAMLAYHRYDLQKIAGD LPIGFEASVAGGIPIIKALRDGLGANHILSICGIINGTCNYILTQMKEQNISFEEALKEA QKLGYAESDPSFDIGGFDAAHKLLILASIAYGIDAKPEDILIEGITQITQEDIDFAKEFG YNLKLLGIAKKDKESIELRIHPTLLPQNAMIGKVDGVMNAISVVGDNVGETLFYGAGAGG NATASAVISDIIEIARTKSSPMLGFKTSIEKNLTLKPIAEIQSAYYLRIIVLDKPGVLAQ ITTILGQQEISIDTFLQRKAKNKNHSTLLLSTHTCLESKIQIAIEKINNLEITQEKPVMI RIEKD >gi|197325097|gb|DS990369.1| GENE 294 278319 - 278675 320 118 aa, chain + ## HITS:1 COG:HP0823 KEGG:ns NR:ns ## COG: HP0823 COG0792 # Protein_GI_number: 15645442 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease distantly related to archaeal Holliday junction resolvase # Organism: Helicobacter pylori 26695 # 5 116 10 114 114 90 43.0 7e-19 MNTTQKGKEAESFACEYLKNQNFEILKQNFFTPFGEIDIIAKKEGILFFIEVKSGIGFEP VFNITKTKLTRLIKSIEVYLKAEKNKDSYCLSAIILSKETAKDSTFKIQWIENLTLFI >gi|197325097|gb|DS990369.1| GENE 295 278672 - 279139 554 155 aa, chain - ## HITS:1 COG:SA0683 KEGG:ns NR:ns ## COG: SA0683 COG0780 # Protein_GI_number: 15926405 # Func_class: R General function prediction only # Function: Enzyme related to GTP cyclohydrolase I # Organism: Staphylococcus aureus N315 # 2 155 12 166 166 256 78.0 1e-68 MELKQLGKQTNYIFQYNKEVLETFENKHSKRDYFVKFNCPEFTSLCPITGQPDFATIYIS YIPNLKMVESKSLKLYLFSFRNHGGFHEDCVNVILDDLVELMEPKYIEVWGKFTPRGGIS IDPYVNYGIPNTKYAEIAEFRLLNHDLYPEKIDNR >gi|197325097|gb|DS990369.1| GENE 296 279249 - 280457 1436 402 aa, chain - ## HITS:1 COG:HP1506 KEGG:ns NR:ns ## COG: HP1506 COG0786 # Protein_GI_number: 15646115 # Func_class: E Amino acid transport and metabolism # Function: Na+/glutamate symporter # Organism: Helicobacter pylori 26695 # 2 402 3 406 408 473 64.0 1e-133 MEISLNFYATLVALVAVLLLGRWIISRSKFLQDYNIPEPVVGGIIVAIVIFLLLKYGGIK FQFDNSLKDPLMLAFYASIGLSADFASFKKGGKILFGFLFIVVGLLILQNIAGIVAAKVM GVNPLIGLLGGSITMSGGHGTGAAWAEVFKNSPYNFTAALEVAMACATFGLIAGGIIGGP VAHYLVKKYKLKLPNDHSQDEVEIAFEKPEKERLITATSFVESLALIAISLLIGTIVAKF FQGSSFTLPTFVWCLLVGAVLRNVLQATKIHQVFDREVAVLGNVSLSLFLAFALMTINLM ELVSLALPMLVILLIQVVIMVFYAVFVTFRYCGKDYDAAVLAAGHCGFGLGATPTAMVNM QTVTQHYGPSHMAFIIVPLVGAFFIDLINAFVISGTLKFPFF >gi|197325097|gb|DS990369.1| GENE 297 280555 - 281841 1309 428 aa, chain - ## HITS:1 COG:Cj0307 KEGG:ns NR:ns ## COG: Cj0307 COG0161 # Protein_GI_number: 15791675 # Func_class: H Coenzyme transport and metabolism # Function: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase # Organism: Campylobacter jejuni # 1 427 1 426 427 564 62.0 1e-160 MDSQTLIQQDLKHIWHPCTQMQDHEKNIPLIPIQSAKGVYLYDFDGNQYLDCISSWWVNL FGHCNPYINQKIKEQLENLEHIIFSGFTHKPIIDLSNRLVKLLDSKLSKCFYADNGSSVI EVALKMAFHAQAIKGKTKNKFLCLQNAYHGETIGALSVGDVGIYTEVYQPILLQTLKIKA PIGEDFEESLKELKEILTNQKDEIIAFVLEPLIQCAGNMNMYSSKFIKEAITLCQENGIY VIFDEIAVGFGRSGSMFAYEQCDVVPDFLCLSKGITGGYLPLSVVVTTNEIYELFYAPYE ENKSFLHSHSYTGNPLACACANAVLDLFERENVIVKNKILSQFIWEKMQILESFAFVKNL RYCGMVFAFDLVGFDGQRKGLEVFNMALKKGLLLRPLGNTIYFMPPYIITKEQVCYVIDC LEEILKKI >gi|197325097|gb|DS990369.1| GENE 298 281904 - 282305 661 133 aa, chain - ## HITS:1 COG:no KEGG:Cla_1502 NR:ns ## KEGG: Cla_1502 # Name: not_defined # Def: hypothetical protein # Organism: C.lari # Pathway: not_defined # 16 133 14 120 120 70 44.0 2e-11 MKTLKLFGALTLAALFSTAAMADFDFDVQGQISAVDDKNKTITLAGPGGQLVIKVLPYTE IKGDDCGPFGQDIYGSFKDLTPGKYVKVEAVPYGGYNAYSANNAQAINPATGLPKDGQLT AKEIEWNCMPRAY >gi|197325097|gb|DS990369.1| GENE 299 282473 - 283120 635 215 aa, chain - ## HITS:1 COG:HP1509 KEGG:ns NR:ns ## COG: HP1509 COG0344 # Protein_GI_number: 15646118 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Helicobacter pylori 26695 # 2 215 41 262 262 171 44.0 9e-43 MVIIAGIIDFFTSLNGFFYLLAYLVGGIPFGLIYGKIFGGVNIRETGSGSIGATNVLRVL KETNPKIAKKVAILTMVSDAFKGILVILIAKIFNLTYEAQWMIAFLAVVGHCFSPFLKFE GGKGVATGVGVVAVFLPIEAILGLVVWGLVGKVLKISSLASLIGVLFGGLMTFVIHPEIP YIHTHAPILLIMFIIFYKHIPNIIRLFQRKEQKII >gi|197325097|gb|DS990369.1| GENE 300 283130 - 285448 3459 772 aa, chain - ## HITS:1 COG:Cj0003 KEGG:ns NR:ns ## COG: Cj0003 COG0187 # Protein_GI_number: 15791402 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Campylobacter jejuni # 4 772 3 769 769 1066 68.0 0 MENKQYSGSSIKVLKGLEAVRKRPGMYIGDTNTNGLHHLIYEVVDNSIDEAMAGYCNEIS ITLTQQGSAIIKDNGRGIPVDIHPTENIPAATVVLTVLHAGGKFDQDSYKVSGGLHGVGI SVVNALSKSLQMTIHKNGKIYRQNFAQGIPQDELNIIGECKDNGTIIEFIPDDSIFEITE FQREILSKRFKELAYLNKQVTIHFKDERDGFNEIYHFEGGLNQFVNDLNKKPLISTIINF EGTENDVEIQIALAYNEGFEEKVLSFVNNIRTIDGGTHESGFRMGLTRVITNYIEANANA REKDSKITGEDIREGLVAIVSVKVIDPQFEGQTKGKLGSAFVRPIVQKLTYEKLAKFFEE NPNEAKAIMQKALLAARGREAAKKARELTRKKETFSVGTLPGKLADCQSKDPSISEIYLV EGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSEEIKNLITALGCGIGEDFD ITKIRYNKIIIMTDADVDGSHIQTLLMTFFFRYLRGIIESGYLYIAQPPLYRFKKGKKEI YLKDEKALSEYLIENGIENFEFQGIGTKDLMEFFKIVAHYRSTLNELEKRFQLIEIVRYL IENPDLIGMQNQDLYAKIKEKIQNLNFNILNEMIEEQRIHLYVQTDSGLVDIKIDEDLFT HPLFEEAHFVFSKLKERDLGFLNGSDPVEMLEKIEESSKKGADIQRYKGLGEMNPEQLWE TTMTPENRRLIRVEIKDIEEASEVFSLFMGDEVEPRREYIQAHAKDVKHLDV >gi|197325097|gb|DS990369.1| GENE 301 285475 - 286542 1227 355 aa, chain - ## HITS:1 COG:Cj0002 KEGG:ns NR:ns ## COG: Cj0002 COG0592 # Protein_GI_number: 15791401 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Campylobacter jejuni # 1 355 1 355 355 268 41.0 1e-71 MNIIIQNSVLDNIFTALQPFLDKKDSSQITSHIYLETRENQLICKATDFEMGLCSTTNSL TINEQGIATVNGKQILDIIKRLKEGEINLYTNNENLHIKQNKSSFKLPMFNAQEFPSFPE YETLPKLEINSLELINSMKKIFPVIDTNNQKRELNGALLDIKEYSYNFVATDTKRLAMVK FENPSGNNLALIFPKKAITEIQRLFFDHIELFYNEKNIVIKSQNYVFFSHLINGKFPDYE KILPKEIQTELTIPKTKIIEGIKVINSVTNDVKITFKPNEIFFESLSQDNSEAQTQIEIN LPITEEIEIGINSRHVLDFLSQIETTDFIWGLNGKNAPFILKSGNFSTVVMPIIL >gi|197325097|gb|DS990369.1| GENE 302 286708 - 288000 1336 430 aa, chain - ## HITS:1 COG:Cj0001 KEGG:ns NR:ns ## COG: Cj0001 COG0593 # Protein_GI_number: 15791400 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Campylobacter jejuni # 4 429 6 434 440 391 50.0 1e-108 MHPVLLQLKREITPFEFDNYITQLSFNEKYSRDDRIIFNAPNNIIASWIKTKYSSKIAQL FENQNGYKPEIIIEVFNPNKKKENKNNIKKIQNATNLNPSLTFNSFIVGNSNSFAFNVAK AVAQNQSTIYNPLVIYGNTGLGKTHLLNAIGNTNANVGKSVIYTTSEQFLNDYLLHIRNN TMDRFREKYRACDYLLIDDIQFLSGKNQIQEEFFHTFNELKKNNKQIVLTSDRPPKDMNG LEERLKTRFTSGLLADIQPPELETKINIINAKCELDGIHLSPKIIDFIAANINDNIREIE GVLVKLNFSINVTNIQEITIDFVRDILKEYIKESKENINMDRIIENVAKYYNIKPSEIRS KSRSKNIVTARKIVIYLARTLTPNSMLSLADYFDMKDHSTVSKAMKSIQEEINKNPNFKT IIEELKNKIK >gi|197325097|gb|DS990369.1| GENE 303 288131 - 288613 396 160 aa, chain + ## HITS:1 COG:HP0877 KEGG:ns NR:ns ## COG: HP0877 COG0817 # Protein_GI_number: 15645496 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, endonuclease subunit # Organism: Helicobacter pylori 26695 # 1 157 1 157 157 215 70.0 2e-56 MNILGIDPGSRNCGYAIIQMKKESLTLLEAGLIKIKERILQHQILEFVEGIDLVLKNHLI NSVAIEDIFYAYNPKTVIKLAQFRGALSLKILQELGNFTEYTPLQVKKALTGNGKAQKEQ VAFMVKRILGIKGEIKPLDITDAIAIAITHAQRLKLQHKD >gi|197325097|gb|DS990369.1| GENE 304 288615 - 289253 548 212 aa, chain + ## HITS:1 COG:Cj0026c KEGG:ns NR:ns ## COG: Cj0026c COG1351 # Protein_GI_number: 15791425 # Func_class: F Nucleotide transport and metabolism # Function: Predicted alternative thymidylate synthase # Organism: Campylobacter jejuni # 1 208 1 205 207 261 66.0 6e-70 MNITLLSYTNLNICSQAIRTCWQSFDKSDNGGEKDRELIDRVGNKYKHSSTLEHLNYTFY IQGISRACLQELARHRMASLSVKSSRYTLKELKTEESFLPIDETNLQRAEKFLVFTENLK VNEASIKALENLRILLKDNISNDLAKFAMPESYKTELTWSINARSLQNFLHLRSSKSALW EIRNLALEIYNHIPKEHQFIFEDLICKNKGDL >gi|197325097|gb|DS990369.1| GENE 305 289250 - 289894 723 214 aa, chain + ## HITS:1 COG:STM3193 KEGG:ns NR:ns ## COG: STM3193 COG0526 # Protein_GI_number: 16766493 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Salmonella typhimurium LT2 # 20 214 25 222 223 125 30.0 6e-29 MKNLKLWLIGICLFSLQVLANDLKENVDYVVLDKPISNMQNKVIEIFNIGCPHCAYYNAN FVPNLLEFLPENVEFLPYHVAAAIPIHEETSNILVVALAKDKEKSLELKDNDSLYKKILN HYFNAIHKERKNWTNRQDFLKEGLEILGISETEYKEILDTKTSKEALKQWQSMLEYTEIQ GVPSFIINGKYMILSSGIKGVEDFIYKVDYLLTK >gi|197325097|gb|DS990369.1| GENE 306 289937 - 291046 1125 369 aa, chain - ## HITS:1 COG:aq_701 KEGG:ns NR:ns ## COG: aq_701 COG1636 # Protein_GI_number: 15606102 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Aquifex aeolicus # 15 303 7 291 413 210 41.0 4e-54 MSQIPYNFSNQKTTLVHICCSVDSHHFLTQLQKLYPQKQFCGFFYNPNIHPYEEYLMRLN DVKRSCEMLKIPLIEGEYDLDSWLCGTKGLEDEPEKGERCSYCFDYRLERTAQIAKETHC VEFTTTLLASPMKSQNELFSQGEMMAKKHSLDFLPIDVRGNGGTKIQNELAKEANLYRQN YCGCLFALTKQREKAQKIPLELVSTLNLPKDSRNLPLLRLKNFQTRESLENNNKTYHIIK RKVQKYCLLKGILTQDSKTIPSFICNHSMINKPTKAKIEFWKDGIGYASKEGILFLEFEK FKDFIQQDSFESLLTNGLDESYQLSLRQKIYPQGFLTSPILIIKEKIIGEFNLEIQFALQ EEIMEDFID >gi|197325097|gb|DS990369.1| GENE 307 291152 - 291907 736 251 aa, chain - ## HITS:1 COG:Cj1713 KEGG:ns NR:ns ## COG: Cj1713 COG0820 # Protein_GI_number: 15793016 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Campylobacter jejuni # 5 246 111 352 356 345 71.0 5e-95 MKEDKFTLCLSSQVGCKVGCSFCLTAKGGFVRNLNAGEMVYQVFAIKKDQNIPSNKAVNI VYMGMGEPLDNLENVTKCIQILSELDGLSISRRRQTISTSGIAPKIKKLGALDLGVQLAI SLHAVDDELRTKLMPINKAYNIQNIIDEVVAFPIDSRKRVMFEYLMIDGINDSLECAKKL VALLNKIKAKVNLIYFNPHEGSLYKRPSKEKVEAFREYLLKKGLLCTIRESKGLDISAAC GQLREKEIANA >gi|197325097|gb|DS990369.1| GENE 308 292200 - 292373 249 57 aa, chain - ## HITS:1 COG:Cj0667 KEGG:ns NR:ns ## COG: Cj0667 COG1188 # Protein_GI_number: 15792021 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Campylobacter jejuni # 1 56 1 56 81 62 60.0 2e-10 MRIDKFLNAVNITKRRTIAQDMIENGVVKIAGISVKASRDVKVGDIIEIAFLEKSRF >gi|197325097|gb|DS990369.1| GENE 309 292466 - 293683 1229 405 aa, chain + ## HITS:1 COG:Cj0665c KEGG:ns NR:ns ## COG: Cj0665c COG0137 # Protein_GI_number: 15792020 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate synthase # Organism: Campylobacter jejuni # 6 402 4 401 406 640 78.0 0 MEKTKDIKKVVLAYSGGLDTSVILKWLGDTYGCEVVTFTADIGQGEEVEPARAKALKLGI KPQNIFIDDLREEFIRDFVFPMFRANTIYEGEYLLGTSIARPLIAKRLVEIAREVGADAI AHGATGKGNDQVRFELGAYALNPDIKVIAPWREWDLNSREKLLAYAESAGIEIEKKQNKS PYSMDANLLHISYEGQILEDPNVAPEEDMWRWSVSPKNAPDNPTIITISFEKGDGVAING EKLSPAEFWAKLNKLGGENGIGRLDLVENRYVGMKSRGCYETPGGTIYLKAHRAIESLCL DREAAHLKDSIMPKYAELIYNGYWFSPEREALQALIDKTQEKVEGVVRLELYKGNVTVLG RESRNSLFNAAYSTFEEDSVYNQKDAAGFIKLNALRFIIAGKARK >gi|197325097|gb|DS990369.1| GENE 310 293686 - 293952 131 88 aa, chain + ## HITS:1 COG:jhp1050 KEGG:ns NR:ns ## COG: jhp1050 COG0270 # Protein_GI_number: 15612115 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Helicobacter pylori J99 # 1 88 4 89 321 117 62.0 4e-27 MTFIDFCSGIGGGRLGLELNGFKCLGFSEIDKEAIKTYKTFFDTTNELEFGDLTKINSNK LPNFDLLISGFPCQSFSIVGKREGFKNK >gi|197325097|gb|DS990369.1| GENE 311 294076 - 294651 460 191 aa, chain + ## HITS:1 COG:HP1121 KEGG:ns NR:ns ## COG: HP1121 COG0270 # Protein_GI_number: 15645735 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Helicobacter pylori 26695 # 3 185 127 308 312 125 42.0 6e-29 MLLESCNYKVFHKVLNTIDFGLAHSRERVYFVGIHNIMDKNFDFMFHTKHKNIECFLSPE QENEFLKESQSYATFLKYLNNKYNQNKYDLASLLEEDFLILDTRQSDLRLYRNKIPTIRR DRQGLLYVYNKKLYKLSGYEALKLQGFDKLQDFKIKINTLKQSDILRQCGNAMSVNVIEA LATKLREGSNG >gi|197325097|gb|DS990369.1| GENE 312 294763 - 295197 272 144 aa, chain + ## HITS:1 COG:no KEGG:HSM_0802 NR:ns ## KEGG: HSM_0802 # Name: not_defined # Def: hypothetical protein # Organism: H.somnus_2336 # Pathway: not_defined # 1 144 41 181 247 144 52.0 8e-34 MNYQLSEIKEVKAQKIKGSYKADVQVVILIQIKLKNLQDVQNIQVKLVSNPQGFNQIDKR WIKSYKALWNIPDNICNILQRFSGEIPPNIDNPRDSRRMFLDEFLQAEQASVVEFFEKNK ILILNDILKGRGQFASEWFLVILK >gi|197325097|gb|DS990369.1| GENE 313 295587 - 297773 2422 728 aa, chain - ## HITS:1 COG:Cj0531 KEGG:ns NR:ns ## COG: Cj0531 COG2838 # Protein_GI_number: 15791892 # Func_class: C Energy production and conversion # Function: Monomeric isocitrate dehydrogenase # Organism: Campylobacter jejuni # 1 728 1 733 734 1085 77.0 0 MKITYTLTDESPALATYSFLPIVKAFLKKAEIEVETSDISLAARILAQFPENGYKDELAL LGNLVEKPDANLIKTPNISASIPQLKAAIAELQQKGFKIPNFPDEPKNDAEKTIKEKYQK VLGSAVNPVLRQGNSDRRSTKAVKEYAKKNPYKVVPFNKDSKSRVSYMQKGDFFDNEKAI LIQNPTTAKIEFIGSKGTEILKDNLKLEKNEILDATFMSVENLSQFYEDQIKICKNENLL LSLHLKATMMKVSDPIIFGYAVKAYFKELFDSFKEEFETLGINPNNGISELLSKIENSSK KAEILAKYNEILAKNAPLSMVNSDKGITNLHVPSDVIVDASMPAMLKNGAKLWDKEGKER DTNALIPDKTYATIYEAVIEDLHQNGTLDPKTLGSVSNVGLMAKKAQEYGSHDKTFVAKE DGIFRITDKNGNTLLEHKVQKGDIYRANQAKYDAVLNWIDLGIQRADITGNTAIFWLDEK RPSNKIMIDLVKQRLQEKGKEIAILAPKEACLESLKLIRAGKDCISITGNVLRDYLTDLF PILELGTSAKMLSVVPMLNGGAMFETGAGGSAPKQVEQLIEENHLRWDSLGEFLALQASL EFFAQKTNNAKAQILANCLDEAIAKWLDNNKAPSRKVKEDDNRTSHFYLAMYFANALANQ NKDTNLQDFFKTIAEEFNANESKIHQEYLEAQGVKVDLGGYYKFDDAKCNAIMRPSATFN TILEKISK >gi|197325097|gb|DS990369.1| GENE 314 297946 - 299391 1760 481 aa, chain - ## HITS:1 COG:HP1362 KEGG:ns NR:ns ## COG: HP1362 COG0305 # Protein_GI_number: 15645974 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Helicobacter pylori 26695 # 5 445 13 466 488 366 46.0 1e-101 MEIQIERAVLSSIFFDPEQLDFVSETLAPEDFSYTPNQNIFAAMLELRRLDMPIDEEFIL KKSTKSRPIDQEEILNILSTSPISDIHAYTKEIKEDSTRRKLHSLAMKINEASNDSDNPA KDIIDYLQSELYKITNIHENKEFRDSKEVTTATLRYIEEIKKRGNSVLIGVDTGFHSLNE KTTGFGKGDLIIVAARPAMGKTTLVLNMAQKALDTGRGVAFFSLEMPAEQLMLRMLSAKT SIALQHLRVGNLQDEEWEQLSHAADIMANAPLFIDDNSLLTIHQFRTKMRKIKSKHPEIG LAVIDYLQLMSSTDGKKDRHQEVSEISRGLKMIARELEIPIIALSQLNRSLESRSDRRPM LSDLRESGSIEQDADIILFVYRDAVYKQKDEKEKEEAARKEGKEYKSTFVPKNEEEAEII IGKQRNGPTGVVKLTFHKHCTRFVDSTDSSNALEIIYESTAQTTQTHFTPPENNQIEAPI I >gi|197325097|gb|DS990369.1| GENE 315 299375 - 300121 528 248 aa, chain - ## HITS:1 COG:no KEGG:Arnit_2263 NR:ns ## KEGG: Arnit_2263 # Name: not_defined # Def: hypothetical protein # Organism: A.nitrofigilis # Pathway: not_defined # 12 236 7 248 261 78 26.0 3e-13 MGKSFTQTPYYLQKAIKDFFNPFILRLALLPFIISLVFWITIFYFFSKDVMTNLFALIQP YLTIETSWLSWIQAPLEFLAHTFLFIIIMVFFWLLQFLTLMLINAFLTPFVVQFIHKQHY SSILIQPDTAFFVSLLFLIISYVIYAMLFLCLLPFYFIPPIWIIGITFLNYWLFSKILLQ DVGENIFSQQEFTHTKQIHKNAIRSLIIPLFLLSLIPFVSFFVPLFSSIALTHLFFHIKG DLKDGNSN >gi|197325097|gb|DS990369.1| GENE 316 300173 - 300904 595 243 aa, chain - ## HITS:1 COG:Cj0304c KEGG:ns NR:ns ## COG: Cj0304c COG0500 # Protein_GI_number: 15791672 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Campylobacter jejuni # 10 241 3 224 228 121 35.0 1e-27 MLKTTLQKTFSKAQNTYNKEAIIQNIMQDTLLEILTHHQNNSHFQNILELGCGRGGFSEK ISKKLTYDNFVALDLIDFSQSFLGKNIEFLQFDIENLEMIKNIYQNITFDLIASNAALQW TNQFKLLPKFSQLAHKNSLLLLGIFGKHNLWEMREFLGNGLEYLDTFNYKTLLQQEWEIL ECFSTLHTLHFHHPLEVFRHLKNTGVNVYSTSLTLTKTHLKSYEERFENNLTYEPLYIFA QKK >gi|197325097|gb|DS990369.1| GENE 317 300904 - 301542 462 212 aa, chain - ## HITS:1 COG:Cj0305c KEGG:ns NR:ns ## COG: Cj0305c COG2830 # Protein_GI_number: 15791673 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 9 211 11 198 203 95 34.0 6e-20 MNIYHKINNNKNILLLFGGFASHFSHFQNFIPSNYDWILLSHYQHLDFSTLENLLLPLQN KNLHLLGFSMGVWVAHLFLNQTSIASKFKSKTAVNGTEYGIHETYGINPKLFALTQKKFN LESFKQNLFGNHYPPPKNFLFLEESLLKDELKFFLDHQHHMDNSSKWDRIIISSNDLVFP TQTQKNFWDCQGYKQQILEIDAPHFAFFDWKF >gi|197325097|gb|DS990369.1| GENE 318 301526 - 302698 760 390 aa, chain - ## HITS:1 COG:Cj0306c KEGG:ns NR:ns ## COG: Cj0306c COG0156 # Protein_GI_number: 15791674 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Campylobacter jejuni # 4 381 3 380 380 308 48.0 1e-83 MNAIQTILNQLEQSSNLRILFPQKHKDLEIQKNGKWLLNLASNDYLNLASNQNFIAEFLD SDLFRDNCFFSASSSRSLSGNFEIYEAFESYLESLFNKKALLFNSGYHANVGALSALGKL KNVLFLADRSIHASHIDGLKSFGKIAFKRFLHNDMQDLRKLLEHNAKNFEAIFILSEGLF SMEGDFAKIQSLIALKKQFKNVYLYIDEAHSIGSFGQNGLGLCYPILKEIDFLILTFGKA IASMGACVLCQSDFRNYFINFSRSLIYSTALPPVNIAMSYFSFLHLPNLQKQRERLSNIS QDFKILLQNNLQYEILGEYNILSLVLKDNHKAIFFQKELEKRGFFAPAIRPPTIPQNQAC LRFSLTQKIPFNQLESLCDSLKEIDYEYLS >gi|197325097|gb|DS990369.1| GENE 319 302710 - 303852 1351 380 aa, chain - ## HITS:1 COG:jhp1158 KEGG:ns NR:ns ## COG: jhp1158 COG0505 # Protein_GI_number: 15612223 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Helicobacter pylori J99 # 9 376 4 373 375 442 59.0 1e-124 MQTLKNAWIYLENGMFFEAKSFGANKTATGELVFNTSMTGYQEITTDPSYAGQFICFTMP EIGIVGANPKDTESHSIFAKGILCHNYNTFYSNFRATESLGQFLQQYDCMGICGLDTRML TQTIRKQGAMMMIASTEISDKNELKKILESSPRIEAINYIKEVSTKENYTHNEGRFDFNL MNFSKPITTKKILAIDFGIKKSILRELVNAGFSVEVIPHCFDAESLIKRYSNKEFDGIFL SNGPGDPQVLDQEVAQIKKLIEAKIPIFAICLGHQLLSLAQGYPTHKLKFGHHGGNHPVK NLLTNQVEITAQNHNYSVPESIQEIAEVTHRNLFDGTIEGLRYKNALICSLQHHPEAGPG PSESTALFSEFAKLIEESKA >gi|197325097|gb|DS990369.1| GENE 320 303852 - 304403 823 183 aa, chain - ## HITS:1 COG:Cj1495c KEGG:ns NR:ns ## COG: Cj1495c COG2952 # Protein_GI_number: 15792810 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 1 183 1 183 183 162 51.0 4e-40 MKLRLPHAPYIGNKIALDLSNCGFVSLLHGIEGISKVAQNFIEEDIKEEMKIEEKAREIL EENLDEIEFMRADEHQLFWKIKHKLAENEGFILNWEDRYNHLAHKILDELYEEDLIEYST SETRVKNVIFKAIDGYIKIYNEIEDVVNEKISNYKRKIVFGSEEYDLIFDRLYQEELKKK GFL >gi|197325097|gb|DS990369.1| GENE 321 304457 - 305065 591 202 aa, chain - ## HITS:1 COG:Cj0308c KEGG:ns NR:ns ## COG: Cj0308c COG0132 # Protein_GI_number: 15791676 # Func_class: H Coenzyme transport and metabolism # Function: Dethiobiotin synthetase # Organism: Campylobacter jejuni # 1 189 1 195 201 200 52.0 2e-51 MQLFICGSHTDVGKTSVSAALCYAFGFEYFKLVQAGIPTDSQKIQTLSPQTKIHPQGILL QTPASPHIAMQKENIQYNGLEIPLPPSNHLLIESAGGLFTPLDSCVCMIDYLQKYHFPTL LVGSYYLGGINHILLSIEALKQRNIELLGLIISGEQNPQMDWFIQNYSSIKIAHFPTYTN DFQTKAQNLKNSLKKNGILNSK >gi|197325097|gb|DS990369.1| GENE 322 305065 - 306426 1575 453 aa, chain - ## HITS:1 COG:Cj1624c KEGG:ns NR:ns ## COG: Cj1624c COG1760 # Protein_GI_number: 15792929 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Campylobacter jejuni # 1 453 1 454 454 585 66.0 1e-167 MSNLNIFKIGVGPSSSHTLGPILAANAFCETLKEKTLLQKTNQVNATLFGSLSLTGKGHL SDKALIWGLSGINPKTISPSLQEEILKEVMENKTLKLGGERKISFIYEKNIHFCNEFLPL HENAMEFSALDEKGEILFKERYYSIGGGFIKTQEQMQNRNTTKTIQQKLEINNAKELIQE ANKRRKNLAEISMLYEKQFHTKEEIREYCIEIWEVMQESFYQGCHPKSLILPGPLHLHRR AKGLYERIHPTTDPFGILDYISLYAIAIAEENAGGGRVVTAPTNGACAVIPSVMLYLKNH SVGFSDALAVDFLLSAMMIGSLYKKNASISGAEAGCQAEIGSASSMAAAAMTTILGGNIQ QACNAAEIAMEHHLGLTCDPAFGLVQIPCIERNAFGAIKAISAARMAMTRKSHPVVSLDN VIATMYQTGKDMNAKYRETALGGLAKTLSKSVC >gi|197325097|gb|DS990369.1| GENE 323 306434 - 306955 690 173 aa, chain - ## HITS:1 COG:jhp0121 KEGG:ns NR:ns ## COG: jhp0121 COG0814 # Protein_GI_number: 15611191 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Helicobacter pylori J99 # 1 173 245 413 413 178 59.0 6e-45 MLLIFVMFFVFSCILCLDATDFQAARDANIPILSYFANKLNVPFIAYGAPVVAFLAIVTS FFGHYFGAYEGLNGILRKAIKMSGNENPNLKAIKVFSTLFMYVTIIAVAYLNPSILNFIE SLGGPIIAMILFIMPMIAIWSVSKLKKYKNPALDLFVTITGILTISSVVYTLF >gi|197325097|gb|DS990369.1| GENE 324 307323 - 307538 172 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253828176|ref|ZP_04871061.1| ## NR: gi|253828176|ref|ZP_04871061.1| hypothetical protein HCAN_1536 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1536 [Helicobacter canadensis MIT 98-5491] # 1 69 1 69 126 113 100.0 5e-24 MRAFVLLPLIVFIILGAMILWISLKQESLQEDLQTKHTQTKYLALHFISFKEIIKSKIQD KSLIISNFTAS >gi|197325097|gb|DS990369.1| GENE 325 307535 - 308341 461 268 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418836|ref|ZP_03656842.1| ## NR: gi|224418836|ref|ZP_03656842.1| hypothetical protein HcanM9_06130 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1535 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1535 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 268 1 268 268 454 100.0 1e-126 MKKAFSLIEITIALGILGIIVVLSSSSLLKTYELHTLSQQKLETKLQSLNALLQIKKILQ DSIQPSLKIIPNEKISQNPINLKNKSLIFYPKTQELLLIGDYSLPCLHGIFNPKTLQINS TLNVEFLAIKTDFIHFLNQNCKVYHNKLYALFVTENFVFPEDFYSQKYTAEILNLNANAL QTTIPKFLESTTQNLTLLPKVYFLQTPYILDFRDKISLQTQDKTHILFENLDSFFISTSD FGILLKLCTKDANNQELCLEDFITKETL >gi|197325097|gb|DS990369.1| GENE 326 308338 - 308565 214 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418837|ref|ZP_03656843.1| ## NR: gi|224418837|ref|ZP_03656843.1| hypothetical protein HcanM9_06135 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1534 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1534 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 75 1 75 75 105 100.0 1e-21 MSKRAFSLLEIILFISVVSILIIALLQSTSLKNIQTQSQALELQKVTFCNNTNTLCLFQS NIPESLYFYEVNATK >gi|197325097|gb|DS990369.1| GENE 327 308662 - 309726 806 354 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418838|ref|ZP_03656844.1| ## NR: gi|224418838|ref|ZP_03656844.1| hypothetical protein HcanM9_06140 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1533 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1533 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 354 1 354 354 653 100.0 0 MQFFSNKAMVFYPLVIKEYDEENLYDFLEDKICKILNLRRDCEYFLRYFYDKDCFYCLLI NKEVLLQDIKDSREFLTHPAFLAYGLVNQERQFILMLHFCEKLEITLVGYFRGQITFLQS FNDLQDSLEKSQEIFHNYPSANFYFWDTQGQTQEESLGALIKWEILSPKLEELTLEESWN FNPLEKPIPFWKQKIGIILLSGVAGVICGLLYPLFLSILVFFESKNHENLKAQIGNQNKT LQAQMQNYTMLQKESVALQEKYEILKQSFRDNEQFLQKFLHTHPRITQFFDKINPLLELQ RIKIAYFYSKQDVFEILFVGANVMEFLEQLEKNHSVSLESLEEIGGFYFVRVKV >gi|197325097|gb|DS990369.1| GENE 328 309723 - 310265 299 180 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418839|ref|ZP_03656845.1| ## NR: gi|224418839|ref|ZP_03656845.1| hypothetical protein HcanM9_06145 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1532 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1532 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 180 1 180 180 277 100.0 2e-73 MRITLQKIEEFLLKRTLRERILVAIFLFVSCFWIVFVVTFSKIQESFHQAKAKTLAMEKE LEKLQGKQAIPIVNNEALQKKIKELEFLILEQNQKKERLQGKFQNLFVLKELGSKLESFF IARESDKFLVSGSGDFESIFGFLRKIEALQTFLTESFLVYPNQQGLDFFMTLKTLQDEKR >gi|197325097|gb|DS990369.1| GENE 329 310262 - 310519 233 85 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418840|ref|ZP_03656846.1| ## NR: gi|224418840|ref|ZP_03656846.1| hypothetical protein HcanM9_06150 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1531 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1531 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 85 1 85 85 154 100.0 3e-36 MKQVLVVFCLGVFAWCYDPFFYEELDFRLLGVMPNKVNLNGKWLRLGEEFESFVVSEIGK KCVVLKNKKREDLREVCLVKERKFL >gi|197325097|gb|DS990369.1| GENE 330 310516 - 312006 1476 496 aa, chain + ## HITS:1 COG:Cj1474c KEGG:ns NR:ns ## COG: Cj1474c COG1450 # Protein_GI_number: 15792789 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulD # Organism: Campylobacter jejuni # 21 490 22 468 472 241 36.0 3e-63 MIFLKFVFYFWVISFGFLQACENRVFDLELQDFGVKIYEVLGEFANECSFSVVLGDEAVK EHLNRELTMVNFKGKDLNFVFDLLFKQADLHYVYSNDVLLLKSKETKTYKINYVSTNRVG ISNTSVSINHEDNSSRYSSYVSSTEDSQATSKSGINITSEDGFNFWETIEGEILGILGQK ENDSRVVLNKGAGLISVRGSKRELERVESYIQSLHQRLQKQVLIDVHILSITHNNTNTTG INWDELYNLQNLIIPAFGEGASFGGNGEVGNTSGINIVGQKGVSNLHYGINIFSQGLSLN RIIEFLESYGKVESISNPKVLTLNNQPAMISVGDILRYQKNTIYQNTNAQTTLTNTDNEY PSLFAGVLLDITPLVFGEEIMLKINPSITKTKENRTEIPNTAFETPPNLTTNQLSSIVSV KNNQKVILGGLISKNFATKENKIPILGSIPLIKPLFSYSQEVENTEEIVFIIEPKIIQAQ DSISLEALGYSLIKEE >gi|197325097|gb|DS990369.1| GENE 331 312007 - 312666 690 219 aa, chain + ## HITS:1 COG:no KEGG:WS0542 NR:ns ## KEGG: WS0542 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 32 219 96 303 307 67 28.0 6e-10 MLKFALLCMMMGGILIFFAKDRNSHLESKSIQKPCFYVQASGLNLREKPTIEADIQGRLE YNAKICEYSKMENGFLKISGGWVFAEYLSLNPPLPKKPILTPQKETMTKISQETLPQAKL PQEKSKKIILASRPKEVKEDWLDQAREFLAKENYQAAKTLALKANQENPQNLGSWEVFAK GLYLEGKKVEAIEVLEYVLQTYYDEKLALLLEKMQGNKI >gi|197325097|gb|DS990369.1| GENE 332 312813 - 314171 1155 452 aa, chain + ## HITS:1 COG:PA0686 KEGG:ns NR:ns ## COG: PA0686 COG2804 # Protein_GI_number: 15595883 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Pseudomonas aeruginosa # 64 452 83 467 469 310 40.0 4e-84 MKYFEAIIIKKEEKILLIALKNPFEKSYQETLKMIFSNFSIVFGLIKNRDFKAAISWLER EELLQNLLERIPNEIAKDSKEENSSILEFLKLILQEAVYKGASDVHFERDFETLRIRLRI DGVLVEYLSLESWLLNPLSSCIKLLSHLNITETRIPQDGRFSLSIELKNKAFKDFDFRIS TLPLIEGESIVLRILDKQKTLMPLEALGFSSNELEKITNLFNLPYGLVFITGPTGSGKST TMYGILNILKERNLKIITLEDPVEYRLRHISQVAIGSKINFASILRNVLRQDPDVIILGE VRDKETLQIAIQAAFTGHLVFATLHTNDSLDTIVRLLDMGLEPYFISQALSGIIAQRLLR KLCRHCRESQNGVFVSKGCEMCNYTGYSGREVVAEILCMDKDLEDFIAQKITKTEILEKI LANNENFTLEKKALNKVKKGITDLKEVYKVIK >gi|197325097|gb|DS990369.1| GENE 333 314171 - 315367 868 398 aa, chain + ## HITS:1 COG:VC0406 KEGG:ns NR:ns ## COG: VC0406 COG1459 # Protein_GI_number: 15640433 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Vibrio cholerae # 73 398 81 407 407 112 24.0 1e-24 MPSFVVKYKKGGKIYEQKFNAPNKKALEETLQKKKVLVLAIDYKASWLDYFFLQKPKIKE ISNAFYQLKFGLKANLPLKDLLESIQKYAKNNYLKMQFLKVSNSLHQGKELADCFKDAGF SDFICAMIGIGQKSGRLVESVEFILLDLQNRQKNHKLLRKILFYPLFMVCVMVLVFLGIT LFVLPQFESLFASLDTSLPLASQSLLFMRVLVLNYGILIVGASILGLWLLRKLYCVNKKF QAKISKWLLKIPFLGRVLYFYQTSQFLLCFYWLYKSDLELKMVLDIATKSLSNAYLKERL QEIYPSLMRGALIADSFEGSGVWDSLSMQLLHSAKDQAGFLEALEVVLALHQEELQSKSE SLLAMMEPLMVFVLGILVLWLALGIFLPLWELPMQIKG >gi|197325097|gb|DS990369.1| GENE 334 315440 - 316168 891 242 aa, chain + ## HITS:1 COG:Cj1380 KEGG:ns NR:ns ## COG: Cj1380 COG1651 # Protein_GI_number: 15792703 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Campylobacter jejuni # 96 203 95 198 236 77 45.0 2e-14 MKKIIAILACGLTFASAALEENFKKSIKDMTDVEVEVEFKKELVSFPSMYFVIGKTKGGD IFPVIVSKEGEYFIGLSNVLKLSNVDTQMMQEALNQAQKEKEARDSKVLKELFSGFKESD FLYLKGASENLPTKIVVSDPDCPYCREHLKGIDQELKEANIKIIFAPIHEKEAFIKSQLI MSEAAKLKKDDTKGKVAILNKYFKDIALSNKELKTDYSQITRNTEKVFKSGVIKGVPFIY EE >gi|197325097|gb|DS990369.1| GENE 335 316170 - 317285 1133 371 aa, chain + ## HITS:1 COG:Cj1646 KEGG:ns NR:ns ## COG: Cj1646 COG0767 # Protein_GI_number: 15792951 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, permease component # Organism: Campylobacter jejuni # 73 370 59 368 369 232 43.0 9e-61 MTPTLEIIDNDIYILKLSGLWDYKIPKSLLLRLDSIKLTNVKIKIELAENFDLDFCGGEI LERWILALESKNIVLENALKNHSKSQQIFQILATRKNPLKQDMVQDFIKLHWDSFQIIKG FFKDSLMAIGFFGEILYAWFSSLLQPKNIRLKATLYCIQESLVKAIGIVALACFLIGIVI AYQGSIQLGQFGASILIVEMSSMLTLREMAPIITAIIIAGRSASAFSAEIGMMRATQEID AMRVMGFDPITFLVLPRMLALCLVLPLVVFIADLFGLLGAMLVCQLQLGIGTEQFVERFL QVVDMRHFWVGIAKAPFFGLIISFVGCFHGFIVAKDTRSIGVHTTKSVVESIFLVIAFDA LCSVVFTEMGW >gi|197325097|gb|DS990369.1| GENE 336 317286 - 318017 293 243 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 217 1 216 223 117 33 6e-25 MESLIQIKNLCTGYGKNIIHDGVSFEVYSRDIFALLGGSGSGKSTLLNTMIFLKKPISGE VRILGKEIWGLDAKETLAMKLNFGVLFQFGALFSSLNVLDNLTLPLCEYTKFDKQDRENL AYFWLTRVGLNPEVARLYPSELSGGMVKRVGLARALSLSPKILFLDEPTSGLDPKSARHF DALIKELRDLLGISIVMVTHDMESVKGVVDRMVVLKDKKVFFQGSLEELRAQTNSLDLFL YQI >gi|197325097|gb|DS990369.1| GENE 337 318027 - 318824 665 265 aa, chain + ## HITS:1 COG:HP1464 KEGG:ns NR:ns ## COG: HP1464 COG1463 # Protein_GI_number: 15646073 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, periplasmic component # Organism: Helicobacter pylori 26695 # 1 258 1 271 271 111 26.0 1e-24 METRLNYVLLGVFFIAVLLALAGFIFWMGKYDRNLSEYNEYYIYNKELPNGIRVETPVKY LGLPVGFVRHYQLSGNEVEIVVWVQKEIILNEGSKVAVQSQGLTGGNFLTLIQGKGKPFS QSQKAILGFKENWIEQVSSKAENVMAQLETSLERFNQLLNDKNLGNIEMGLQNFANVSSE LYWVLKDARAEIRNIGEVRARLDEDLKQGDYNLRLILTPLLFNLEQNSKSLQKILQEGNE ILDDFRDSPSGFLFHSTKQKLGPRE >gi|197325097|gb|DS990369.1| GENE 338 318834 - 319385 473 183 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418849|ref|ZP_03656855.1| ## NR: gi|224418849|ref|ZP_03656855.1| hypothetical protein HcanM9_06195 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1522 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1522 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 183 1 183 183 331 100.0 1e-89 MKIRLKNIILGIILGVIFSGCISKEVLPVSYYQLEIPYKEVNCKSIQVYHWLGVEAVEKI NTQKIAYRQSPNEVAYFAKNQWIESLPDMLDSLMLKAAHQSCINLVESKDLARDSLKLYV LDFSYDEVSNRVLFEAKLQKNAKVSKTLWIYRDEVVPEGDFQEIIKTMNAVILDGYFQAF LQM >gi|197325097|gb|DS990369.1| GENE 339 319397 - 319732 314 111 aa, chain + ## HITS:1 COG:no KEGG:WS0005 NR:ns ## KEGG: WS0005 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: Folate biosynthesis [PATH:wsu00790]; Metabolic pathways [PATH:wsu01100] # 5 107 3 104 107 62 36.0 5e-09 MEYVIFLEDWILEVVIGILPFEREKRQKIKLEGEFCYFKNQGESFLDYRELREFFKEAFL NEFGLLEEALEYFSKEIPKRFSQIQSYKITITKLEIFEDCKVAMQISHKIC >gi|197325097|gb|DS990369.1| GENE 340 319758 - 320237 628 159 aa, chain + ## HITS:1 COG:slr0242 KEGG:ns NR:ns ## COG: slr0242 COG1225 # Protein_GI_number: 16329296 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Synechocystis # 3 156 5 158 160 191 59.0 4e-49 MELSINAQAPNFSLPNQDNAEISLQDFGGSWVILYFYPKDKTPGCTKEACDFRDNLSELN DLSAVVLGISPDSVKSHQSFIEKEKLNFTLLSDTSKNVLKAYGAWGPKKLYGKEYEGVIR STFIINPQGKIAFIWKNVKVKGHIEAIKEKLKELQNLPS >gi|197325097|gb|DS990369.1| GENE 341 320226 - 320465 365 79 aa, chain - ## HITS:1 COG:no KEGG:WS0068 NR:ns ## KEGG: WS0068 # Name: INT # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 79 1 79 79 96 69.0 4e-19 MFERIDSLLKKIEEAQAEIEFLLRLAKISFVDYVMIKRGSQDMPPSLDMWNLQQIDEEVS KLKEAIDSLNKIKKEVLTW >gi|197325097|gb|DS990369.1| GENE 342 320525 - 321514 632 329 aa, chain - ## HITS:1 COG:jhp0665 KEGG:ns NR:ns ## COG: jhp0665 COG0037 # Protein_GI_number: 15611732 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Helicobacter pylori J99 # 8 315 9 312 338 205 40.0 1e-52 MEKPKLEFLEELKGAKNLLAFSGGLDSTALYFLLKSYGIAFDIAIVDYGIRQQSHLEISR AKTLCFWDNKQCYTLKAPKINKNFEANARAIRYDFFTSLVSQNSYQNLILAHQLNDNLEW FLMQFCKGTSIENMQIPPKSLFWKQNQKTCYILRPMIFLPRITLQMYLQTHKIFYFEDSS NADTAYKRNYFRKYFANPLIQNFQGGIQFSLELLAKEHSKTDLEDLGGFFVFKHNALSLY YIDKASKKLGYCLSKIQKQQCQTHLTQQEFSIVLGGKIALEKSQNQICIFPYTHYKLTKA QKETFRKNKIPKKFRFFLAKKGLIDFTLF >gi|197325097|gb|DS990369.1| GENE 343 321501 - 321992 414 163 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229530839|ref|ZP_04420225.1| SSU ribosomal protein S12P methylthiotransferase [Sulfurospirillum deleyianum DSM 6946] # 1 163 273 436 436 164 50 1e-131 MELLEMMRKAPNSFVRTSFILGHPGEGEEEFEELCQLIENFSFDRINFFAYSKEEGTKSA TMEQIPSKTIHSRLKKINKIFTSQYQQNLKKLKGAEVTALIEGKSKEHEFFYAGRELRFA PEIDGEILINDKTIDEEITSGYYKVKITEIAGEDILGCVIGKA >gi|197325097|gb|DS990369.1| GENE 344 322088 - 322921 545 278 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227372256|ref|ZP_03855738.1| SSU ribosomal protein S12P methylthiotransferase [Veillonella parvula DSM 2008] # 1 276 1 277 449 214 42 7e-68 MQKKLHLISLGCTKNLVDSEVMLGKLSEYENTQEINEADVVIVNTCGFIEAAKKESIQTL LEALETKKQGAILVASGCLSERYAKELKEEIPELDIITGVGDYDKIDKMIEERQKGEKIL SNAKGVFLADETNKRIISGSKIHAYIKLSEGCNQKCSFCAIPSFKGKLHSRTLESTLKEV RNLASQGYSDFTFISQDSSSYLRDLGIKDGLVELISGIEDLAKEGVNIKSARILYLYPAT TSKKLIQKIIDSPIFHNYFDMPLQHASQKVLKTMGRNG >gi|197325097|gb|DS990369.1| GENE 345 322923 - 323498 777 191 aa, chain - ## HITS:1 COG:Cj0799c KEGG:ns NR:ns ## COG: Cj0799c COG0632 # Protein_GI_number: 15792137 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Campylobacter jejuni # 1 188 1 182 183 116 37.0 2e-26 MIIALEGKIFAKEPTKIAINCTGVVYEVFISLQTSNQITQNKGDSITLLTTHIIREDVQN LFGFLESSEKKLFDTLIKINGVGPKVAMAILSTYTPQTFAKVVEGNDIKSMQRVPGIGPK SAGRILVELSGWSLELSQNETNHKDSDYNQVILALESLGYKNDIIQKAIKGLEKNEVGQM VKAALKKIQGL >gi|197325097|gb|DS990369.1| GENE 346 323507 - 325294 1799 595 aa, chain - ## HITS:1 COG:no KEGG:WS0441 NR:ns ## KEGG: WS0441 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 3 577 4 583 607 248 30.0 4e-64 MLKKDLNSFRPYYINECEDIKFAFKQIASQLNCNLDSLDFELRGITTYVKKTYDYSPQPL KESETDSFLSHYNNLLEPNLIISQRYSILIFKKEKKETRFHMLTDKSFSQAFLVFRAGFV FNPQEFENLYLQIKKFKAWNRILFFKEEEEKKALKGFLNTLEYPLKQEVNYLLSQSFGYI PPSESSLEFKKEVTQNFQTLIANEIICIFHKATKGKPGRNIRGEYIIPENPKTLDQPCTL KFDPDSIKPVETPLEIRYLTAIGGILKYEDNYLYIENTLETKEVNLKTTGSLIGKIESGT EINITETDSLKEALGQGMKVQASKINIQGNVGANAQINANEVFIGGFTHQDSKIYATTAT IKNHKGYLQAKNVKIKTLETGIIEAQRVEVEQMYGGKIYAEEIIIQTLHSNAFLYATKSI EVSLMQKGENRFYIAANYSLENKALYQKLLDQKDSSIKEAILLTKELKVESLELQKIKNT ADEMRKILIHYKNTNTNPPSYLLAKFEEYHTRVIALKEKRAKINTLSELSKQAYNALNRL DSATKDGTIVVQSGWVGYNEIHYVFYSPKKEFMLIPKMGEPSKVIFKNDKIHLVL >gi|197325097|gb|DS990369.1| GENE 347 325378 - 326787 467 469 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803542|ref|ZP_02197411.1| 30S ribosomal protein S20 [Vibrio campbellii AND4] # 3 466 6 484 520 184 28 4e-45 MFLRAFLTNSSGILTSRILGFIRDLMTASTLGAGIYSDIFFVAFKLPNLFRRIFGEGAFN QAFLPSFFQARFRGGFALKILAVFCGILFVLSMLVWGFQKEVTKVLAYGFSDENIVLAAP LVAINFWYLLLVFVVTFLGAMLQYKQNFTAWAYSPALLNLAMIVALFLARNSPAYEAVLW LSYGVLAGGVAQILLHFYPMWRLKFFRLLCVGFRELESKKEAVNASVKSFYKQFFPAMVG SSSAQLASFIDTLLASFLTSGSISYLYYANRIFQLPLAIFAIATSTALFPLVAKYLKEKE ESKALRELSRSFWLLCFLLGACVIGGVLLQNEIIWLLFERGQFGREDTLETAAVFSAYML GLLPFGLSRIFSLWLYSQNKQALAAKITAFSLGVGTICSLVLMRFYGAVGLAIAGSISGF FVFFLTLHYFGWGRFVEILKKPRWAFYIFVLLSLESMLIWLFKSYVFAL >gi|197325097|gb|DS990369.1| GENE 348 326954 - 327877 1100 307 aa, chain - ## HITS:1 COG:Cj1244 KEGG:ns NR:ns ## COG: Cj1244 COG0731 # Protein_GI_number: 15792568 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductases # Organism: Campylobacter jejuni # 1 304 1 300 300 229 43.0 3e-60 MNIIFGPVASRRFGESLGVDLSPQTKQCNYDCLYCELEGKKAQDSMQEILEVDTILTAIK EALDKFKNIQSLTITANGEPTLYPNLYELMLRLEDIKGDTQTLLLTNGSLLWDLSVSRAC LLFDKVKFSLDAISQEIFKKIDRPIKNISLEQILQGIYQFSADFSGELYAEILFVKGVND DPKEVQKMARFLAPMQLKRLDIGSIDRPPAYRVNPISQESLENFEAIFKSYGIPVFLPKR ITSPKKDNLELSKDEILKTLALRPMSKADIQSLWNETSIQRLLELQQQGILSLTNINGVE FFSIKNK >gi|197325097|gb|DS990369.1| GENE 349 327987 - 328529 685 180 aa, chain - ## HITS:1 COG:HP1286 KEGG:ns NR:ns ## COG: HP1286 COG2353 # Protein_GI_number: 15645899 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Helicobacter pylori 26695 # 19 180 16 182 182 135 43.0 4e-32 MKKFLSISALVALLSCPLLAQPYVLDPNNSQVNFEISHLKLTKVDGKFDKFSANIDYDTT TKVLNSLEGSVEIASVDTANAKRDEHLNAADIFDSKKYPNMTFKMTKFEAGKIYGDLTIK NTTKPIVLQSTETLNGATLQIQASATIKRSDFGVVWESNLKNSLVGDEVKILLTLTANPQ >gi|197325097|gb|DS990369.1| GENE 350 328740 - 329660 682 306 aa, chain - ## HITS:1 COG:Cj0976 KEGG:ns NR:ns ## COG: Cj0976 COG0500 # Protein_GI_number: 15792303 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Campylobacter jejuni # 4 305 1 295 296 251 45.0 2e-66 MQSLKEIQAKRNLVLNHKHIAPLFESLNSLQSLPQNELENATFSFDDFINLSLPNLTESS LHHITEVAKTLIPWRKGPFKINSLEILSEWNSAIKYNLLEPHLNLQGKIIGDIGCNNGYY MFRMLKENPKKIIGLDPMPLCKLQFDFMQFFIQDSRLDFELLGIEDLPFLDINFDILFCL GVLYHRKSPIDSIKIIYNSLKQGGEAIFDSIIIEGDEEIALCPRNKRYAKMPNVYFIPTL KTFINWLEFCGFKEITHIATLKTGIDEQRKTPWSNAESLEDFLTPDKTKTIEGYPAPQRA YLKVKK >gi|197325097|gb|DS990369.1| GENE 351 329660 - 329863 299 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418863|ref|ZP_03656869.1| ## NR: gi|224418863|ref|ZP_03656869.1| hypothetical protein HcanM9_06265 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1510 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1510 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 67 1 67 67 127 100.0 2e-28 MKLLILQSLIISTFLSGCLYRNECGYSNSYWDEKGYYYDSQGNYVETCPDNLIYKDGKQP QMREEAF >gi|197325097|gb|DS990369.1| GENE 352 329975 - 331900 2095 641 aa, chain - ## HITS:1 COG:Cj0888c KEGG:ns NR:ns ## COG: Cj0888c COG0488 # Protein_GI_number: 15792218 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Campylobacter jejuni # 1 641 1 643 643 583 53.0 1e-166 MANLSLQNISKQYDYKPILSDISLSVQEGERMAIVGKNGAGKSTLLKILSGEVEADEGNR ILQGNLEIKHLIQKPVFQEGQSVKEVILHSLEELTQARKRLDEIAQKLQNHPDDESLIKE HSLLSNFIDHHNAWDLENKINQILETFALKELQDNFANLLSGGEQKRVALACLLLRKPDI LLLDEPTNHLDVEMVEFLEDLLLREKWTLIFISHDRYFIDRIATRVIEVEDCKIRSFKGG YGDYLRAKEELLKSLAKSHETLLKHLKAEEEWLARGVRARVKRNEGRKERIMQMRQTAKN NPSIIRKMTLELEREKKHFNQEEGVNRKKMLFDLQNISFSLDKKLLIKDFSTRILQRDKI AIVGKNGAGKSTLLKLMLGRLKPQKGKIECGEVKIGYFDQHREMLDDSKDLLETFCPFGG DRIDVKGKNMHVFGYLKNFLFPKEFLDKKIGTLSGGEKNRVALALLFTKEYDCLILDEPT NDLDIPTINILEEYLQSFDGAIIFVSHDRYFVDKIAQKLLVFKGNGNIEETHKSFSEYLE IEKELKDYQIFKNSLQTPKDKPKTEKQKTKLSYHQMRLLEILPQEIEELESQIKELESKL YSNTLSTAELQELSLELQSKQTLCEEKTLQYFELEEQRESL >gi|197325097|gb|DS990369.1| GENE 353 331893 - 332756 1012 287 aa, chain - ## HITS:1 COG:Cj0407 KEGG:ns NR:ns ## COG: Cj0407 COG0682 # Protein_GI_number: 15791774 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Campylobacter jejuni # 17 286 1 270 271 279 61.0 5e-75 MNAFYTWDYMNFLRLLMEKWNNIYSTFDPVAFNLFGISVHWYGIMYVLALLVALGVAKWI AKKDSYPISNALLESYFLWVEIGVILGARLGYIIFYDPFTTYYLTHPWQIFNPLDKDGNF VGIRGMSYHGAVIGFLIASLIFARVKKINFWLFMDLAGLSIPLGYVFGRIGNFLNQELIG RETSSALGIYVNGILRHPSQLYEAFLEGIVVFVILFLWRKKAHFIGQIGILYGVLYSLMR FIAEFFREPDSQLGFVAFNWLTQGQLLSLIIGALCFALLFKPKEKNG >gi|197325097|gb|DS990369.1| GENE 354 332692 - 332919 121 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418867|ref|ZP_03656873.1| ## NR: gi|224418867|ref|ZP_03656873.1| hypothetical protein HcanM9_06285 [Helicobacter canadensis MIT 98-5491] # 1 75 19 93 93 129 100.0 1e-28 MKLLLEKIRKTQINEISFSIPQAKDISLYILGYWLKLAKEDGFKFHFYLSDDLLYERFLY LGLHEFFEVINGKME >gi|197325097|gb|DS990369.1| GENE 355 333489 - 333785 341 98 aa, chain + ## HITS:1 COG:Cj1121c KEGG:ns NR:ns ## COG: Cj1121c COG0399 # Protein_GI_number: 15792446 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Campylobacter jejuni # 1 97 270 386 386 79 34.0 1e-15 MPEIPDSRGNRWLSTLIFKEKKVNVMDLVQILASKDIESRPLWKPMHLQPLFRDSLNFCD GTSQNLFNNGICLPSGGALERREIDEVSGYILDYLKSL >gi|197325097|gb|DS990369.1| GENE 356 333786 - 335594 1989 602 aa, chain + ## HITS:1 COG:Cj1120c KEGG:ns NR:ns ## COG: Cj1120c COG1086 # Protein_GI_number: 15792445 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate sugar epimerases # Organism: Campylobacter jejuni # 13 601 7 589 590 512 48.0 1e-145 MIKSAIFRPSNLKRILFFLVIDIVVSYFALVLSYDLRFSFQVPLEFNSGVILAFLVLIVL KIGALWVFKIYLVPWRFFGLSEALKIIYAHILAYGIFTLLFFLGFFDKFPLSVVIIDFVI SGILIGGIRISKRIYLENSPKNSPKPALIFGANTQAATLIKSSLNSEIPFYPLAIIDEDK KEQGNYISNLKVYPKTALKELLEKHKIKSVILTKPYAKPPLEKLFNELTQMGIEEIKIAS MLKEDKPLEDISIEDLLSRPSKDLDKEVIGEFIANKTILITGAGGSIGSEIVRQCVEFGA KRLILLDHSEYNLYAITEELTRKISSKNDKKSLLRTAMFSILEKDRLLELMQEEKPDIVV HAAAYKHVPLCEYNQKSAIENNILGSKNVIDSAIEIKVPKIVIISTDKAVRPTNVMGATK RVVELYAQNVDSKQSEIVAVRFGNVLGSSGSVVPKFKAQIQSGGPITVTHPEITRYFMLI PEACRLVLQASAIAKGGEIFILDMGEPVKIVDLAKNMLKLYGKEEEIEIVFSGLRPGEKL YEELLIGESEGKTKYPSIQVARPTSYDINKLNQDISELLETQEVVAKLKEIVVEFNHNAH GQ >gi|197325097|gb|DS990369.1| GENE 357 335578 - 336553 805 325 aa, chain + ## HITS:1 COG:SMb21250 KEGG:ns NR:ns ## COG: SMb21250 COG0438 # Protein_GI_number: 16264502 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Sinorhizobium meliloti # 9 321 51 371 427 146 29.0 4e-35 MHTDNKPTLALVVSSLRMGGAEKVASFLANALVDSYRIVLILWSDKDRFFSLDERIEVVV IATKMRGMLGNIERIFRLGRCFREYKVDLVVSFIHQTNVLAILAARANKIPIIATEHSIY ASLDHLKIWKFLRQRVYPLANHITTLTQKDLKHYKFLKNVSVMPNPVVIHKALKADQQDF SVHKPYILSAGRMIESKHFEDLLEVFGRFSKKNPQFSLLLAGDGKCRDSLEKQAQNLKAK IVFLGKVENLYNAYQNAEFFALTSHREGLSNVLIESLMCGVPVISYDCPYGPSEIINDGK NGILVKMGDKNALLESFEVMLTKRQ Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:14:49 2011 Seq name: gi|197325096|gb|DS990370.1| Helicobacter canadensis MIT 98-5491 supercont2.3 genomic scaffold, whole genome shotgun sequence Length of sequence - 326124 bp Number of predicted genes - 334, with homology - 330 Number of transcription units - 141, operones - 84 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 3/0.020 - CDS 4 - 573 586 ## COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase 2 1 Op 2 . - CDS 570 - 1466 1196 ## COG1261 Flagellar basal body P-ring biosynthesis protein 3 1 Op 3 . - CDS 1467 - 3617 1918 ## COG2217 Cation transport ATPase - Prom 3727 - 3786 11.6 + Prom 3708 - 3767 8.9 4 2 Op 1 . + CDS 3805 - 4830 1199 ## COG0208 Ribonucleotide reductase, beta subunit 5 2 Op 2 . + CDS 4820 - 5542 683 ## COG0388 Predicted amidohydrolase 6 2 Op 3 . + CDS 5542 - 6168 718 ## COG2518 Protein-L-isoaspartate carboxylmethyltransferase 7 3 Tu 1 . - CDS 6172 - 6918 973 ## COG0253 Diaminopimelate epimerase - Prom 6938 - 6997 9.5 + Prom 6894 - 6953 8.7 8 4 Op 1 . + CDS 7022 - 8338 1440 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases 9 4 Op 2 . + CDS 8340 - 8474 179 ## 10 5 Tu 1 . + CDS 8837 - 10462 1615 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) + Term 10463 - 10506 0.4 11 6 Op 1 . - CDS 10529 - 11803 1392 ## COG0826 Collagenase and related proteases 12 6 Op 2 . - CDS 11809 - 12510 967 ## WS2123 hypothetical protein - Prom 12600 - 12659 10.5 + Prom 12591 - 12650 9.9 13 7 Tu 1 . + CDS 12697 - 13845 1300 ## COG2814 Arabinose efflux permease + Prom 13896 - 13955 5.8 14 8 Op 1 11/0.020 + CDS 14028 - 14984 505 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 15 8 Op 2 1/0.143 + CDS 14984 - 15706 372 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 16 8 Op 3 . + CDS 15703 - 16524 420 ## COG0673 Predicted dehydrogenases and related proteins 17 8 Op 4 . + CDS 16566 - 17618 480 ## Despr_0343 FAD dependent oxidoreductase 18 9 Tu 1 . - CDS 18075 - 18290 143 ## - Prom 18332 - 18391 1.7 + Prom 18442 - 18501 9.4 19 10 Op 1 . + CDS 18712 - 19110 361 ## gi|224418889|ref|ZP_03656895.1| hypothetical protein HcanM9_06395 + Prom 19125 - 19184 4.3 20 10 Op 2 . + CDS 19224 - 19535 176 ## CFF8240_1391 GtrA family protein + Prom 19557 - 19616 6.7 21 11 Tu 1 . + CDS 19652 - 19849 204 ## gi|224418891|ref|ZP_03656897.1| hypothetical protein HcanM9_06405 + Term 19942 - 19978 2.8 + Prom 20112 - 20171 8.1 22 12 Tu 1 . + CDS 20192 - 20824 611 ## COG4185 Uncharacterized protein conserved in bacteria + Term 21072 - 21118 -0.9 + Prom 20940 - 20999 11.5 23 13 Op 1 8/0.020 + CDS 21142 - 21459 383 ## COG2452 Predicted site-specific integrase-resolvase 24 13 Op 2 . + CDS 21443 - 22693 784 ## COG0675 Transposase and inactivated derivatives + Prom 22798 - 22857 6.5 25 14 Op 1 . + CDS 23041 - 23757 534 ## TEQUI_0162 hypothetical protein 26 14 Op 2 . + CDS 23757 - 23933 138 ## gi|224418897|ref|ZP_03656903.1| hypothetical protein HcanM9_06435 - Term 24050 - 24094 -0.9 27 15 Tu 1 . - CDS 24159 - 24563 450 ## gi|224418899|ref|ZP_03656905.1| hypothetical protein HcanM9_06445 - Prom 24586 - 24645 5.9 28 16 Tu 1 . + CDS 24963 - 25274 272 ## CJA_3633 hypothetical protein + Term 25412 - 25477 15.6 29 17 Tu 1 . + CDS 25683 - 26561 750 ## RBRH_02471 hypothetical protein + Term 26702 - 26732 1.9 - Term 27795 - 27850 10.0 30 18 Op 1 34/0.000 - CDS 27912 - 28673 545 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 31 18 Op 2 17/0.000 - CDS 28682 - 29335 634 ## COG0765 ABC-type amino acid transport system, permease component 32 18 Op 3 . - CDS 29335 - 30003 613 ## COG0765 ABC-type amino acid transport system, permease component - Prom 30105 - 30164 7.3 + Prom 29997 - 30056 9.6 33 19 Op 1 . + CDS 30151 - 30579 348 ## COG1981 Predicted membrane protein 34 19 Op 2 . + CDS 30594 - 32006 1386 ## COG0165 Argininosuccinate lyase 35 19 Op 3 . + CDS 31996 - 32715 369 ## PROTEIN SUPPORTED gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 36 20 Op 1 . - CDS 32722 - 34560 1988 ## COG0322 Nuclease subunit of the excinuclease complex 37 20 Op 2 . - CDS 34548 - 34895 226 ## WS1606 hypothetical protein - Prom 34988 - 35047 5.3 38 21 Op 1 . + CDS 35091 - 36557 1725 ## COG0029 Aspartate oxidase + Prom 36560 - 36619 9.0 39 21 Op 2 . + CDS 36654 - 37490 1073 ## COG2301 Citrate lyase beta subunit - Term 37483 - 37516 4.0 40 22 Op 1 4/0.020 - CDS 37518 - 39308 2116 ## COG0591 Na+/proline symporter 41 22 Op 2 . - CDS 39320 - 42799 3076 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 42833 - 42892 10.7 + Prom 42894 - 42953 6.3 42 23 Op 1 1/0.143 + CDS 42978 - 44333 806 ## COG1055 Na+/H+ antiporter NhaD and related arsenite permeases + Prom 44345 - 44404 11.8 43 23 Op 2 3/0.020 + CDS 44433 - 45686 985 ## COG0477 Permeases of the major facilitator superfamily + Prom 45693 - 45752 6.6 44 24 Tu 1 . + CDS 45814 - 46848 1007 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) + Term 46937 - 46987 -0.7 + Prom 47130 - 47189 8.9 45 25 Op 1 . + CDS 47287 - 48237 954 ## COG2958 Uncharacterized protein conserved in bacteria 46 25 Op 2 1/0.143 + CDS 48251 - 50434 2000 ## COG0519 GMP synthase, PP-ATPase domain/subunit 47 25 Op 3 . + CDS 50464 - 51450 570 ## COG0270 Site-specific DNA methylase 48 25 Op 4 . + CDS 51454 - 52476 746 ## C8J_0132 hypothetical protein + Prom 52534 - 52593 7.5 49 26 Tu 1 . + CDS 52630 - 53415 509 ## COG1479 Uncharacterized conserved protein + Prom 53487 - 53546 5.6 50 27 Tu 1 . + CDS 53571 - 55271 1227 ## Cyan7822_0072 hypothetical protein + Prom 55559 - 55618 5.0 51 28 Op 1 22/0.000 + CDS 55669 - 55899 380 ## COG1918 Fe2+ transport system protein A 52 28 Op 2 2/0.041 + CDS 55892 - 56458 653 ## COG0370 Fe2+ transport system protein B + Term 56560 - 56631 16.1 + Prom 56460 - 56519 80.3 53 29 Tu 1 . + CDS 56745 - 58172 1911 ## COG0370 Fe2+ transport system protein B + Term 58174 - 58209 -0.9 54 30 Tu 1 . - CDS 58294 - 58995 449 ## TEQUI_0439 TcuB protein - Term 59066 - 59103 0.5 55 31 Op 1 . - CDS 59320 - 59484 245 ## gi|253827880|ref|ZP_04870765.1| Citrate utilization protein B 56 31 Op 2 . - CDS 59494 - 60891 1595 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 57 31 Op 3 3/0.020 - CDS 60891 - 62198 1250 ## COG0477 Permeases of the major facilitator superfamily - Prom 62269 - 62328 8.3 - Term 62275 - 62331 13.6 58 32 Op 1 . - CDS 62449 - 63099 729 ## COG1802 Transcriptional regulators 59 32 Op 2 . - CDS 63158 - 63919 408 ## HH1091 type I restriction enzyme (EC:2.1.1.72) - Term 63940 - 63974 2.5 60 33 Op 1 . - CDS 63975 - 64799 659 ## HH1091 type I restriction enzyme (EC:2.1.1.72) 61 33 Op 2 . - CDS 64799 - 66043 1394 ## COG0814 Amino acid permeases - Prom 66128 - 66187 13.4 + Prom 66070 - 66129 8.9 62 34 Tu 1 . + CDS 66158 - 66304 136 ## gi|253827886|ref|ZP_04870771.1| hypothetical protein HCAN_1242 + Term 66554 - 66622 13.5 + Prom 66524 - 66583 80.4 63 35 Op 1 . + CDS 66685 - 66870 179 ## gi|253827886|ref|ZP_04870771.1| hypothetical protein HCAN_1242 64 35 Op 2 . + CDS 66903 - 67811 736 ## COG0685 5,10-methylenetetrahydrofolate reductase 65 35 Op 3 . + CDS 67804 - 68967 1121 ## COG0772 Bacterial cell division membrane protein 66 35 Op 4 . + CDS 69021 - 70277 1750 ## COG0019 Diaminopimelate decarboxylase 67 35 Op 5 . + CDS 70287 - 71351 1085 ## COG0077 Prephenate dehydratase 68 35 Op 6 . + CDS 71395 - 71871 659 ## COG1580 Flagellar basal body-associated protein + Prom 72199 - 72258 2.5 69 36 Op 1 2/0.041 + CDS 72363 - 72548 178 ## COG3197 Uncharacterized protein, possibly involved in nitrogen fixation 70 36 Op 2 . + CDS 72545 - 73501 1233 ## COG0492 Thioredoxin reductase + Term 73528 - 73567 3.2 + Prom 73503 - 73562 7.5 71 37 Op 1 2/0.041 + CDS 73586 - 73774 310 ## PROTEIN SUPPORTED gi|224418948|ref|ZP_03656954.1| 50S ribosomal protein L28 72 37 Op 2 . + CDS 73795 - 74925 1251 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component 73 37 Op 3 . + CDS 74918 - 76108 1139 ## COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase) 74 37 Op 4 . + CDS 76177 - 76401 489 ## CFF8240_0974 hypothetical protein 75 38 Op 1 . - CDS 76405 - 76731 380 ## COG1324 Uncharacterized protein involved in tolerance to divalent cations 76 38 Op 2 . - CDS 76735 - 77016 306 ## WS1042 hypothetical protein 77 38 Op 3 . - CDS 77016 - 77597 346 ## gi|224418954|ref|ZP_03656960.1| hypothetical protein HcanM9_06720 - Prom 77641 - 77700 4.7 78 39 Op 1 . - CDS 77745 - 78224 509 ## WS1039 hypothetical protein 79 39 Op 2 . - CDS 78247 - 79977 1908 ## COG1164 Oligoendopeptidase F - Prom 80007 - 80066 2.9 80 40 Op 1 . - CDS 80102 - 81529 1968 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) - Prom 81550 - 81609 5.4 81 40 Op 2 . - CDS 81656 - 82909 1595 ## COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase - Prom 83029 - 83088 12.1 + Prom 82985 - 83044 13.0 82 41 Op 1 5/0.020 + CDS 83069 - 84775 215 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 83 41 Op 2 26/0.000 + CDS 84803 - 85732 793 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 84 41 Op 3 25/0.000 + CDS 85729 - 86847 680 ## COG0438 Glycosyltransferase 85 41 Op 4 . + CDS 86838 - 87980 921 ## COG0438 Glycosyltransferase + Prom 87982 - 88041 5.8 86 42 Op 1 2/0.041 + CDS 88084 - 88440 543 ## COG0853 Aspartate 1-decarboxylase 87 42 Op 2 . + CDS 88433 - 88741 588 ## COG0718 Uncharacterized protein conserved in bacteria 88 42 Op 3 . + CDS 88744 - 89826 1140 ## WS1680 hypothetical protein 89 42 Op 4 2/0.041 + CDS 89798 - 90664 1072 ## COG0142 Geranylgeranyl pyrophosphate synthase 90 42 Op 5 1/0.143 + CDS 90675 - 91457 747 ## COG0496 Predicted acid phosphatase 91 42 Op 6 . + CDS 91454 - 92146 665 ## COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 92 42 Op 7 . + CDS 92134 - 92295 306 ## 93 42 Op 8 . + CDS 92295 - 93176 974 ## COG0388 Predicted amidohydrolase 94 42 Op 9 . + CDS 93169 - 93729 657 ## Saut_1046 methyltransferase type 12 95 42 Op 10 . + CDS 93722 - 95062 1164 ## COG0534 Na+-driven multidrug efflux pump 96 43 Tu 1 . - CDS 95059 - 95277 216 ## gi|224418973|ref|ZP_03656979.1| hypothetical protein HcanM9_06815 - Prom 95391 - 95450 8.8 + Prom 95327 - 95386 6.3 97 44 Op 1 4/0.020 + CDS 95406 - 96734 1969 ## COG0172 Seryl-tRNA synthetase 98 44 Op 2 . + CDS 96739 - 99117 2024 ## COG0457 FOG: TPR repeat - Term 99129 - 99172 5.5 99 45 Op 1 3/0.020 - CDS 99180 - 100631 1856 ## COG0516 IMP dehydrogenase/GMP reductase 100 45 Op 2 . - CDS 100628 - 101983 294 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 - Prom 102009 - 102068 13.7 101 46 Tu 1 . - CDS 102259 - 104193 1880 ## COG1629 Outer membrane receptor proteins, mostly Fe transport - Prom 104325 - 104384 8.7 + Prom 104441 - 104500 12.6 102 47 Tu 1 . + CDS 104536 - 105405 969 ## COG0428 Predicted divalent heavy-metal cations transporter - Term 105289 - 105321 -0.8 103 48 Op 1 . - CDS 105402 - 106004 600 ## COG3467 Predicted flavin-nucleotide-binding protein 104 48 Op 2 20/0.000 - CDS 106016 - 106996 1384 ## COG0822 NifU homolog involved in Fe-S cluster formation 105 48 Op 3 . - CDS 107008 - 108180 1351 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes - Prom 108328 - 108387 7.8 - Term 108256 - 108313 8.7 106 49 Op 1 . - CDS 108437 - 109177 735 ## COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase 107 49 Op 2 . - CDS 109181 - 109435 344 ## COG3809 Uncharacterized protein conserved in bacteria - Prom 109464 - 109523 3.2 108 49 Op 3 . - CDS 109536 - 109928 412 ## gi|253827933|ref|ZP_04870818.1| hypothetical protein HCAN_1289 - Prom 109999 - 110058 20.7 + Prom 109977 - 110036 23.2 109 50 Tu 1 . + CDS 110056 - 111261 1717 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase - Term 111251 - 111291 2.2 110 51 Op 1 . - CDS 111299 - 111982 459 ## COG1496 Uncharacterized conserved protein 111 51 Op 2 . - CDS 111969 - 112994 1163 ## COG1077 Actin-like ATPase involved in cell morphogenesis - Prom 113077 - 113136 9.3 + Prom 113033 - 113092 5.8 112 52 Op 1 3/0.020 + CDS 113116 - 114330 1279 ## COG0501 Zn-dependent protease with chaperone function 113 52 Op 2 . + CDS 114327 - 115163 212 ## PROTEIN SUPPORTED gi|160872888|ref|ZP_02063020.1| protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific - Term 115067 - 115104 1.4 114 53 Op 1 . - CDS 115180 - 115935 1009 ## WS0087 hypothetical protein 115 53 Op 2 . - CDS 115946 - 116491 728 ## WS0086 hypothetical protein 116 53 Op 3 1/0.143 - CDS 116511 - 116981 516 ## COG0112 Glycine/serine hydroxymethyltransferase - Prom 117052 - 117111 80.3 117 54 Op 1 3/0.020 - CDS 117113 - 117847 1032 ## COG0112 Glycine/serine hydroxymethyltransferase 118 54 Op 2 2/0.041 - CDS 117849 - 119342 1631 ## COG1190 Lysyl-tRNA synthetase (class II) 119 54 Op 3 . - CDS 119385 - 119948 441 ## COG1286 Uncharacterized membrane protein, required for colicin V production - Prom 120038 - 120097 9.4 + Prom 119937 - 119996 7.0 120 55 Tu 1 . + CDS 120064 - 120567 781 ## COG1666 Uncharacterized protein conserved in bacteria + Term 120631 - 120673 -0.9 + Prom 120622 - 120681 8.3 121 56 Tu 1 . + CDS 120723 - 121829 873 ## COG0815 Apolipoprotein N-acyltransferase 122 57 Op 1 . - CDS 121803 - 121952 57 ## gi|313142512|ref|ZP_07804705.1| predicted protein 123 57 Op 2 . - CDS 121954 - 122664 769 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases 124 57 Op 3 . - CDS 122649 - 124121 1940 ## COG0306 Phosphate/sulphate permeases - Prom 124266 - 124325 6.4 + Prom 124265 - 124324 8.6 125 58 Tu 1 . + CDS 124440 - 125174 1151 ## COG2063 Flagellar basal body L-ring protein + Prom 125256 - 125315 9.1 126 59 Op 1 . + CDS 125337 - 126797 940 ## COG0498 Threonine synthase 127 59 Op 2 . + CDS 126809 - 127105 491 ## COG0752 Glycyl-tRNA synthetase, alpha subunit + Term 127142 - 127209 26.5 + Prom 127107 - 127166 80.3 128 60 Op 1 3/0.020 + CDS 127296 - 127781 674 ## COG0752 Glycyl-tRNA synthetase, alpha subunit 129 60 Op 2 7/0.020 + CDS 127759 - 128505 810 ## COG0327 Uncharacterized conserved protein 130 60 Op 3 3/0.020 + CDS 128532 - 129245 1032 ## COG1579 Zn-ribbon protein, possibly nucleic acid-binding + Prom 129312 - 129371 9.6 131 61 Op 1 3/0.020 + CDS 129399 - 130478 653 ## COG1519 3-deoxy-D-manno-octulosonic-acid transferase 132 61 Op 2 . + CDS 130475 - 131272 748 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 133 61 Op 3 1/0.143 + CDS 131340 - 132257 1258 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 134 61 Op 4 . + CDS 132267 - 133349 1231 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs 135 61 Op 5 . + CDS 133350 - 134039 620 ## COG0139 Phosphoribosyl-AMP cyclohydrolase 136 61 Op 6 . + CDS 134039 - 134581 569 ## WS0089 hypothetical protein 137 61 Op 7 . + CDS 134582 - 135478 380 ## PROTEIN SUPPORTED gi|163786851|ref|ZP_02181299.1| 50S ribosomal protein L32 - Term 135669 - 135715 4.3 138 62 Tu 1 . - CDS 135718 - 136920 1814 ## COG0133 Tryptophan synthase beta chain - Prom 137050 - 137109 10.0 + Prom 137001 - 137060 6.2 139 63 Op 1 . + CDS 137080 - 138072 797 ## PROTEIN SUPPORTED gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase 140 63 Op 2 . + CDS 138074 - 138853 963 ## Dole_2689 SH3 type 3 domain-containing protein 141 63 Op 3 . + CDS 138857 - 139645 727 ## COG0169 Shikimate 5-dehydrogenase 142 63 Op 4 . + CDS 139684 - 140232 416 ## PROTEIN SUPPORTED gi|229532345|ref|ZP_04421727.1| SSU ribosomal protein S30P; sigma 54 modulation protein 143 63 Op 5 . + CDS 140210 - 141463 959 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 144 64 Op 1 24/0.000 - CDS 141417 - 142697 1370 ## COG0004 Ammonia permease 145 64 Op 2 . - CDS 142716 - 143063 603 ## COG0347 Nitrogen regulatory protein PII - Prom 143148 - 143207 7.8 + Prom 143126 - 143185 10.3 146 65 Op 1 . + CDS 143208 - 144215 1002 ## COG2603 Predicted ATPase 147 65 Op 2 . + CDS 144218 - 145309 1417 ## COG1186 Protein chain release factor B + Term 145324 - 145378 10.2 - Term 145268 - 145317 3.1 148 66 Op 1 . - CDS 145358 - 145870 749 ## COG0716 Flavodoxins 149 66 Op 2 . - CDS 145887 - 146087 136 ## - Prom 146245 - 146304 7.8 + Prom 145887 - 145946 10.1 150 67 Op 1 . + CDS 146020 - 147777 515 ## PROTEIN SUPPORTED gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 + Prom 147799 - 147858 9.5 151 67 Op 2 4/0.020 + CDS 147906 - 148418 790 ## COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes + Prom 148490 - 148549 1.7 152 68 Op 1 18/0.000 + CDS 148572 - 148823 243 ## COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes 153 68 Op 2 7/0.020 + CDS 148823 - 151966 2843 ## COG2895 GTPases - Sulfate adenylate transferase subunit 1 154 68 Op 3 3/0.020 + CDS 151975 - 152568 577 ## COG0529 Adenylylsulfate kinase and related kinases 155 68 Op 4 . + CDS 152561 - 152848 385 ## COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase 156 69 Tu 1 . - CDS 154913 - 155689 855 ## COG0730 Predicted permeases - Prom 155713 - 155772 9.5 + Prom 155699 - 155758 9.8 157 70 Tu 1 . + CDS 155832 - 156029 135 ## WS0997 selenophosphate synthetase + Term 156266 - 156333 31.8 158 71 Tu 1 . + CDS 156375 - 157112 802 ## COG0709 Selenophosphate synthase + Term 157174 - 157217 -0.9 159 72 Op 1 . - CDS 157271 - 157816 487 ## Amuc_0758 hypothetical protein 160 72 Op 2 . - CDS 157867 - 158079 113 ## gi|253827978|ref|ZP_04870863.1| conserved hypothetical protein 161 72 Op 3 . - CDS 158127 - 159593 1566 ## COG0696 Phosphoglyceromutase - Prom 159646 - 159705 6.3 + Prom 159579 - 159638 12.6 162 73 Op 1 28/0.000 + CDS 159673 - 160731 1014 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 163 73 Op 2 . + CDS 160743 - 161957 1448 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase - Term 161834 - 161888 -0.7 164 74 Tu 1 . - CDS 161961 - 162860 939 ## COG0583 Transcriptional regulator - Prom 162951 - 163010 7.5 + Prom 162927 - 162986 13.7 165 75 Tu 1 . + CDS 163045 - 164157 1158 ## COG2855 Predicted membrane protein 166 76 Op 1 . - CDS 164169 - 164480 430 ## HH0922 hypothetical protein 167 76 Op 2 . - CDS 164484 - 165077 483 ## COG0742 N6-adenine-specific methylase 168 76 Op 3 . - CDS 165064 - 165507 576 ## WS1965 hypothetical protein - Prom 165529 - 165588 11.4 - Term 165589 - 165631 6.1 169 77 Tu 1 . - CDS 165642 - 166289 883 ## COG2032 Cu/Zn superoxide dismutase - Prom 166353 - 166412 5.8 + Prom 166301 - 166360 7.5 170 78 Op 1 4/0.020 + CDS 166382 - 166870 870 ## COG0757 3-dehydroquinate dehydratase II 171 78 Op 2 2/0.041 + CDS 166885 - 167928 1313 ## COG0006 Xaa-Pro aminopeptidase 172 78 Op 3 . + CDS 167903 - 168514 269 ## COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 173 78 Op 4 . + CDS 168511 - 169122 777 ## WS1642 flagellar biosynthesis regulator FlhF 174 78 Op 5 12/0.020 + CDS 169197 - 169928 176 ## PROTEIN SUPPORTED gi|157804145|ref|YP_001492694.1| 50S ribosomal protein L32 + Term 170003 - 170053 1.4 + Prom 169936 - 169995 4.6 175 79 Op 1 . + CDS 170065 - 170781 732 ## COG0455 ATPases involved in chromosome partitioning 176 79 Op 2 . + CDS 170800 - 171189 539 ## WS1640 hypothetical protein 177 79 Op 3 3/0.020 + CDS 171173 - 171880 707 ## COG1191 DNA-directed RNA polymerase specialized sigma subunit 178 79 Op 4 20/0.000 + CDS 171873 - 172931 1334 ## COG1868 Flagellar motor switch protein 179 79 Op 5 . + CDS 172940 - 173797 1101 ## COG1886 Flagellar motor switch/type III secretory pathway protein - Term 173787 - 173828 2.4 180 80 Op 1 1/0.143 - CDS 173841 - 175184 1657 ## COG1066 Predicted ATP-dependent serine protease - Prom 175204 - 175263 2.0 181 80 Op 2 1/0.143 - CDS 175278 - 176165 505 ## PROTEIN SUPPORTED gi|157804145|ref|YP_001492694.1| 50S ribosomal protein L32 182 80 Op 3 . - CDS 176165 - 176770 619 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 176798 - 176857 3.6 183 80 Op 4 . - CDS 176859 - 177836 1022 ## gi|224419060|ref|ZP_03657066.1| hypothetical protein HcanM9_07250 - Prom 177968 - 178027 78.2 + TRNA 177953 - 178027 83.4 # Gly GCC 0 0 + TRNA 178066 - 178152 71.7 # Leu TAA 0 0 + TRNA 178182 - 178256 74.0 # Cys GCA 0 0 + TRNA 178310 - 178397 69.5 # Ser TGA 0 0 - Term 178408 - 178446 -0.1 184 81 Op 1 2/0.041 - CDS 178587 - 180086 1447 ## COG0286 Type I restriction-modification system methyltransferase subunit 185 81 Op 2 1/0.143 - CDS 180067 - 180804 743 ## COG3943 Virulence protein - Prom 180830 - 180889 5.3 186 81 Op 3 . - CDS 180891 - 181682 856 ## COG0732 Restriction endonuclease S subunits - Prom 181724 - 181783 5.4 187 82 Op 1 . - CDS 181853 - 182089 270 ## HH1421 hypothetical protein 188 82 Op 2 . - CDS 182091 - 184205 1568 ## COG1204 Superfamily II helicase 189 82 Op 3 . - CDS 184195 - 184596 84 ## HH1419 hypothetical protein - Prom 184622 - 184681 3.4 190 83 Op 1 . - CDS 184687 - 185112 316 ## HH1419 hypothetical protein 191 83 Op 2 . - CDS 185128 - 186516 1020 ## COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 192 83 Op 3 . - CDS 186564 - 187454 655 ## COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases - Prom 187586 - 187645 9.0 - Term 187532 - 187579 -0.4 193 84 Tu 1 . - CDS 187715 - 188563 1157 ## Cla_0124 ATP/GTP-binding protein - Prom 188589 - 188648 11.8 194 85 Tu 1 . - CDS 188753 - 189985 1004 ## CCC13826_0614 hypothetical protein - Prom 190210 - 190269 8.3 195 86 Op 1 . - CDS 190369 - 190788 405 ## COG0239 Integral membrane protein possibly involved in chromosome condensation - Prom 190810 - 190869 1.6 196 86 Op 2 . - CDS 190880 - 191824 949 ## COG0181 Porphobilinogen deaminase 197 86 Op 3 . - CDS 191827 - 192228 480 ## Saut_0907 FxsA cytoplasmic membrane protein - Prom 192445 - 192504 80.3 - Term 192282 - 192348 30.0 198 87 Op 1 3/0.020 - CDS 192506 - 194236 2132 ## COG0442 Prolyl-tRNA synthetase 199 87 Op 2 3/0.020 - CDS 194236 - 195564 1415 ## COG0373 Glutamyl-tRNA reductase 200 87 Op 3 . - CDS 195573 - 196493 958 ## COG0142 Geranylgeranyl pyrophosphate synthase 201 87 Op 4 . - CDS 196471 - 196908 374 ## WS1583 hypothetical protein 202 87 Op 5 . - CDS 196901 - 197167 389 ## gi|224419077|ref|ZP_03657083.1| hypothetical protein HcanM9_07368 203 87 Op 6 . - CDS 197178 - 198476 1761 ## COG0141 Histidinol dehydrogenase 204 87 Op 7 . - CDS 198495 - 200504 1981 ## WS1946 hypothetical protein - Prom 200531 - 200590 11.6 205 88 Op 1 . - CDS 200638 - 201183 417 ## COG3150 Predicted esterase 206 88 Op 2 . - CDS 201238 - 201732 671 ## COG2077 Peroxiredoxin - Prom 201766 - 201825 9.1 207 89 Tu 1 . - CDS 202313 - 203326 901 ## COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase - Prom 203350 - 203409 9.7 + TRNA 203525 - 203599 69.9 # Gln TTG 0 0 + TRNA 203636 - 203712 81.5 # Met CAT 0 0 208 90 Op 1 . - CDS 203719 - 204219 522 ## WS0169 hypothetical protein 209 90 Op 2 . - CDS 204228 - 205163 771 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 210 90 Op 3 . - CDS 205160 - 206428 1737 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 211 90 Op 4 . - CDS 206438 - 206884 328 ## WS0341 hypothetical protein 212 90 Op 5 . - CDS 206884 - 207711 1100 ## COG1210 UDP-glucose pyrophosphorylase 213 90 Op 6 . - CDS 207724 - 208500 575 ## COG2607 Predicted ATPase (AAA+ superfamily) 214 90 Op 7 . - CDS 208500 - 210740 1303 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 210895 - 210954 80.3 215 91 Op 1 . - CDS 210956 - 211135 131 ## gi|253828028|ref|ZP_04870913.1| ATP-dependent Clp protease adaptor protein ClpS - Prom 211161 - 211220 4.6 216 91 Op 2 . - CDS 211225 - 211782 615 ## COG1335 Amidases related to nicotinamidase 217 91 Op 3 . - CDS 211793 - 212755 1231 ## COG1242 Predicted Fe-S oxidoreductase 218 91 Op 4 1/0.143 - CDS 212762 - 214132 1351 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 219 91 Op 5 . - CDS 214142 - 214909 764 ## COG0289 Dihydrodipicolinate reductase 220 91 Op 6 . - CDS 214920 - 215858 557 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 221 91 Op 7 . - CDS 215861 - 216343 404 ## gi|224419097|ref|ZP_03657103.1| hypothetical protein HcanM9_07477 222 91 Op 8 . - CDS 216372 - 216689 567 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 216740 - 216799 11.6 223 92 Tu 1 . - CDS 216801 - 218099 1581 ## COG1157 Flagellar biosynthesis/type III secretory pathway ATPase - Prom 218150 - 218209 6.8 + Prom 218106 - 218165 6.8 224 93 Tu 1 . + CDS 218193 - 219083 1032 ## COG0240 Glycerol-3-phosphate dehydrogenase 225 94 Tu 1 . - CDS 219080 - 220087 1018 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D - Prom 220206 - 220265 16.3 + Prom 220197 - 220256 13.0 226 95 Op 1 . + CDS 220312 - 221604 1683 ## COG2873 O-acetylhomoserine sulfhydrylase 227 95 Op 2 10/0.020 + CDS 221615 - 222649 978 ## COG2391 Predicted transporter component 228 95 Op 3 . + CDS 222659 - 222880 456 ## COG0425 Predicted redox protein, regulator of disulfide bond formation 229 95 Op 4 . + CDS 222890 - 223780 975 ## COG1897 Homoserine trans-succinylase 230 96 Op 1 . - CDS 223777 - 224247 354 ## gi|224419106|ref|ZP_03657112.1| hypothetical protein HcanM9_07522 231 96 Op 2 . - CDS 224249 - 224710 281 ## NAMH_1680 hypothetical protein 232 96 Op 3 1/0.143 - CDS 224714 - 226525 2648 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) - Prom 226680 - 226739 80.4 - Term 226551 - 226589 3.2 233 97 Op 1 . - CDS 226751 - 228088 1762 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) - Prom 228110 - 228169 3.9 234 97 Op 2 . - CDS 228172 - 228792 656 ## COG0194 Guanylate kinase 235 97 Op 3 . - CDS 228793 - 229014 349 ## gi|253828047|ref|ZP_04870932.1| hypothetical protein HCAN_1407 - Prom 229147 - 229206 80.4 236 98 Tu 1 . - CDS 229290 - 230201 1256 ## gi|253828048|ref|ZP_04870933.1| hypothetical protein HCAN_1408 - Prom 230222 - 230281 7.7 + Prom 230203 - 230262 10.7 237 99 Tu 1 . + CDS 230303 - 230836 539 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes - Term 230852 - 230892 -0.2 238 100 Tu 1 . - CDS 230905 - 231696 962 ## COG0084 Mg-dependent DNase - Prom 231729 - 231788 10.7 + Prom 231675 - 231734 9.1 239 101 Op 1 2/0.041 + CDS 231771 - 232385 769 ## COG0307 Riboflavin synthase alpha chain 240 101 Op 2 . + CDS 232387 - 232668 342 ## COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB 241 102 Op 1 . - CDS 232702 - 233481 948 ## COG1387 Histidinol phosphatase and related hydrolases of the PHP family 242 102 Op 2 . - CDS 233482 - 233958 360 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism - Prom 234077 - 234136 80.4 + Prom 234063 - 234122 80.3 243 103 Op 1 12/0.020 + CDS 234316 - 235203 794 ## COG0438 Glycosyltransferase 244 103 Op 2 . + CDS 235184 - 235789 675 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis - TRNA 235791 - 235866 45.7 # Glu TTC 0 0 + Prom 235874 - 235933 6.6 245 104 Op 1 . + CDS 235992 - 238136 1962 ## WS1305 hypothetical protein 246 104 Op 2 . + CDS 238152 - 239231 1641 ## COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis - Term 239193 - 239235 0.1 247 105 Op 1 . - CDS 239236 - 240486 974 ## COG0014 Gamma-glutamyl phosphate reductase 248 105 Op 2 . - CDS 240496 - 242592 2329 ## COG0855 Polyphosphate kinase - Prom 242612 - 242671 3.4 249 106 Op 1 . - CDS 242752 - 243423 546 ## COG0325 Predicted enzyme with a TIM-barrel fold 250 106 Op 2 1/0.143 - CDS 243433 - 244503 1103 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 251 106 Op 3 1/0.143 - CDS 244507 - 245049 249 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 252 106 Op 4 3/0.020 - CDS 245049 - 245831 1144 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 253 106 Op 5 3/0.020 - CDS 245828 - 246742 1145 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 254 106 Op 6 3/0.020 - CDS 246750 - 248009 1199 ## COG0612 Predicted Zn-dependent peptidases 255 106 Op 7 . - CDS 248057 - 249112 1229 ## COG0167 Dihydroorotate dehydrogenase - Prom 249138 - 249197 12.8 256 107 Tu 1 . - CDS 249332 - 250981 1513 ## COG0840 Methyl-accepting chemotaxis protein - Prom 251099 - 251158 5.9 - Term 251045 - 251105 3.8 257 108 Tu 1 . - CDS 251173 - 253746 1528 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 253769 - 253828 7.8 + Prom 253835 - 253894 8.6 258 109 Tu 1 . + CDS 253919 - 254422 596 ## COG0225 Peptide methionine sulfoxide reductase + Prom 254451 - 254510 6.1 259 110 Op 1 . + CDS 254534 - 254893 400 ## gi|224419136|ref|ZP_03657142.1| hypothetical protein HcanM9_07672 260 110 Op 2 40/0.000 + CDS 254896 - 255564 570 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 261 110 Op 3 . + CDS 255557 - 256795 1158 ## COG0642 Signal transduction histidine kinase 262 110 Op 4 . + CDS 256795 - 257730 1067 ## COG0248 Exopolyphosphatase 263 110 Op 5 . + CDS 257801 - 258007 150 ## COG2879 Uncharacterized small protein - Term 257990 - 258050 -0.9 264 111 Tu 1 . - CDS 258083 - 258490 560 ## COG0735 Fe2+/Zn2+ uptake regulation proteins - Prom 258554 - 258613 9.2 + Prom 258518 - 258577 10.5 265 112 Op 1 23/0.000 + CDS 258769 - 260109 1451 ## COG0541 Signal recognition particle GTPase + Term 260127 - 260181 16.5 + Prom 260126 - 260185 7.3 266 112 Op 2 19/0.000 + CDS 260205 - 260438 390 ## PROTEIN SUPPORTED gi|239524562|gb|EEQ64428.1| 30S ribosomal protein S16 267 112 Op 3 12/0.020 + CDS 260438 - 260677 292 ## COG1837 Predicted RNA-binding protein (contains KH domain) 268 112 Op 4 30/0.000 + CDS 260677 - 261228 666 ## COG0806 RimM protein, required for 16S rRNA processing 269 112 Op 5 33/0.000 + CDS 261228 - 261932 532 ## COG0336 tRNA-(guanine-N1)-methyltransferase 270 112 Op 6 . + CDS 261922 - 262278 593 ## PROTEIN SUPPORTED gi|224419147|ref|ZP_03657153.1| 50S ribosomal protein L19 - Term 262239 - 262293 7.2 271 113 Tu 1 . - CDS 262355 - 262534 86 ## COG0679 Predicted permeases - Prom 262690 - 262749 73.7 272 114 Tu 1 . - CDS 262751 - 263335 619 ## COG0679 Predicted permeases - Prom 263359 - 263418 10.2 - Term 263563 - 263592 1.4 273 115 Tu 1 . - CDS 263594 - 265003 1918 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Prom 265032 - 265091 8.8 274 116 Tu 1 . + CDS 265352 - 266848 2257 ## COG1344 Flagellin and related hook-associated proteins + Term 266861 - 266898 5.1 - Term 266945 - 266985 2.0 275 117 Op 1 37/0.000 - CDS 267002 - 267781 327 ## PROTEIN SUPPORTED gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc 276 117 Op 2 . - CDS 267783 - 269051 1530 ## COG0133 Tryptophan synthase beta chain - Prom 269071 - 269130 7.5 + Prom 269077 - 269136 9.2 277 118 Op 1 10/0.020 + CDS 269169 - 270641 1672 ## COG0147 Anthranilate/para-aminobenzoate synthases component I 278 118 Op 2 21/0.000 + CDS 270690 - 272309 1738 ## COG0547 Anthranilate phosphoribosyltransferase 279 118 Op 3 . + CDS 272312 - 273799 1539 ## COG0134 Indole-3-glycerol phosphate synthase + Prom 273802 - 273861 8.0 280 119 Op 1 . + CDS 273888 - 274136 416 ## WS1814 hypothetical protein 281 119 Op 2 . + CDS 274127 - 274519 407 ## WS1815 hypothetical protein 282 119 Op 3 . + CDS 274516 - 274761 218 ## gi|224419159|ref|ZP_03657165.1| hypothetical protein HcanM9_07789 283 119 Op 4 40/0.000 + CDS 274755 - 275441 1121 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 284 119 Op 5 3/0.020 + CDS 275434 - 276675 1193 ## COG0642 Signal transduction histidine kinase 285 119 Op 6 . + CDS 276679 - 277644 1279 ## COG0113 Delta-aminolevulinic acid dehydratase - Term 277635 - 277670 1.1 286 120 Tu 1 . - CDS 277734 - 278693 692 ## COG0564 Pseudouridylate synthases, 23S RNA-specific - Prom 278719 - 278778 4.4 + Prom 278602 - 278661 7.3 287 121 Op 1 . + CDS 278754 - 280103 1163 ## COG0015 Adenylosuccinate lyase 288 121 Op 2 . + CDS 280066 - 280782 595 ## COG0863 DNA modification methylase - Term 280740 - 280779 -0.6 289 122 Tu 1 . - CDS 280799 - 281206 575 ## HH1059 hypothetical protein - Prom 281236 - 281295 9.2 + Prom 281192 - 281251 6.7 290 123 Tu 1 . + CDS 281458 - 282291 798 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 282360 - 282417 -0.7 + Prom 282321 - 282380 7.2 291 124 Tu 1 . + CDS 282539 - 283519 1009 ## COG1073 Hydrolases of the alpha/beta superfamily + Prom 283521 - 283580 80.3 292 125 Tu 1 . + CDS 283765 - 284148 362 ## COG4925 Uncharacterized conserved protein 293 126 Op 1 2/0.041 - CDS 284152 - 284658 484 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 294 126 Op 2 3/0.020 - CDS 284667 - 286100 1212 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase - Prom 286121 - 286180 9.0 - Term 286119 - 286171 1.4 295 127 Tu 1 2/0.041 - CDS 286183 - 286797 466 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 286847 - 286906 7.5 296 128 Op 1 . - CDS 286917 - 287954 898 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 297 128 Op 2 . - CDS 288020 - 289096 941 ## COG0787 Alanine racemase 298 128 Op 3 . - CDS 289128 - 289442 567 ## HH1517 cytochrome c553 - Prom 289593 - 289652 9.6 - TRNA 289642 - 289717 83.6 # Phe GAA 0 0 - Term 289792 - 289833 6.5 299 129 Tu 1 . - CDS 289985 - 290791 865 ## COG0060 Isoleucyl-tRNA synthetase 300 130 Tu 1 . - CDS 291136 - 293091 2014 ## COG0060 Isoleucyl-tRNA synthetase - Prom 293116 - 293175 9.3 + Prom 293106 - 293165 8.4 301 131 Op 1 . + CDS 293216 - 295156 1717 ## WS0172 hypothetical protein + Prom 295163 - 295222 4.8 302 131 Op 2 . + CDS 295245 - 296477 1745 ## COG0281 Malic enzyme 303 131 Op 3 . + CDS 296478 - 296699 353 ## gi|224419181|ref|ZP_03657187.1| hypothetical protein HcanM9_07901 + Prom 296708 - 296767 2.9 304 131 Op 4 1/0.143 + CDS 296789 - 297367 638 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain + Term 297381 - 297447 30.0 + Prom 297369 - 297428 75.0 305 132 Op 1 . + CDS 297529 - 297906 339 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain + Term 298000 - 298041 -0.2 + Prom 298004 - 298063 6.4 306 132 Op 2 . + CDS 298086 - 298910 802 ## WS0007 hypothetical protein 307 132 Op 3 . + CDS 298924 - 300207 780 ## COG0658 Predicted membrane metal-binding protein + Prom 300215 - 300274 6.0 308 133 Op 1 . + CDS 300301 - 300843 466 ## COG2928 Uncharacterized conserved protein 309 133 Op 2 . + CDS 300903 - 301697 731 ## COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases 310 133 Op 3 . + CDS 301699 - 302226 699 ## Suden_1810 hypothetical protein 311 133 Op 4 . + CDS 302229 - 302771 201 ## PROTEIN SUPPORTED gi|149195045|ref|ZP_01872137.1| 50S ribosomal protein L13 312 133 Op 5 . + CDS 302782 - 303027 303 ## COG0083 Homoserine kinase + Term 303087 - 303156 12.2 + Prom 303029 - 303088 80.3 313 134 Op 1 . + CDS 303318 - 303788 279 ## COG0083 Homoserine kinase 314 134 Op 2 . + CDS 303809 - 304048 161 ## NAMH_1544 hypothetical protein 315 134 Op 3 32/0.000 + CDS 304048 - 306687 3559 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 316 134 Op 4 3/0.020 + CDS 306691 - 307062 265 ## COG0858 Ribosome-binding factor A 317 134 Op 5 . + CDS 307052 - 307483 495 ## COG0779 Uncharacterized protein conserved in bacteria 318 134 Op 6 . + CDS 307477 - 308517 803 ## COG0117 Pyrimidine deaminase 319 135 Tu 1 . - CDS 308497 - 309456 1027 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases - Prom 309638 - 309697 9.9 - TRNA 309690 - 309777 67.3 # Ser GGA 0 0 - Term 309808 - 309844 1.2 320 136 Op 1 36/0.000 - CDS 309848 - 310594 1060 ## COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit 321 136 Op 2 8/0.020 - CDS 310591 - 312564 2333 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 322 136 Op 3 1/0.143 - CDS 312575 - 312949 340 ## COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit - Prom 313193 - 313252 80.3 - Term 312980 - 313048 30.4 323 137 Tu 1 . - CDS 313254 - 313574 360 ## COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit - Prom 313642 - 313701 12.6 + Prom 313640 - 313699 9.7 324 138 Op 1 . + CDS 313815 - 314060 506 ## COG0694 Thioredoxin-like proteins and domains 325 138 Op 2 . + CDS 314062 - 314685 742 ## WS1689 hypothetical protein 326 138 Op 3 . + CDS 314682 - 315986 1437 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 327 139 Tu 1 . - CDS 315989 - 316603 704 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - Prom 316766 - 316825 7.2 + Prom 317451 - 317510 6.4 328 140 Op 1 5/0.020 + CDS 317543 - 320566 2635 ## COG3513 Uncharacterized protein conserved in bacteria 329 140 Op 2 4/0.020 + CDS 320553 - 321443 372 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair 330 140 Op 3 . + CDS 321461 - 321820 254 ## COG3512 Uncharacterized protein conserved in bacteria + Prom 322648 - 322707 80.3 331 141 Op 1 . + CDS 322831 - 323181 375 ## gi|224419210|ref|ZP_03657216.1| hypothetical protein HcanM9_08048 + Prom 323183 - 323242 5.4 332 141 Op 2 . + CDS 323269 - 324387 849 ## gi|224419211|ref|ZP_03657217.1| hypothetical protein HcanM9_08053 333 141 Op 3 . + CDS 324396 - 324956 489 ## COG3271 Predicted double-glycine peptidase + Prom 324967 - 325026 5.2 334 141 Op 4 . + CDS 325050 - 325526 670 ## CJE0054 HmcD domain-containing protein Predicted protein(s) >gi|197325096|gb|DS990370.1| GENE 1 4 - 573 586 189 aa, chain - ## HITS:1 COG:HP1476 KEGG:ns NR:ns ## COG: HP1476 COG0163 # Protein_GI_number: 15646085 # Func_class: H Coenzyme transport and metabolism # Function: 3-polyprenyl-4-hydroxybenzoate decarboxylase # Organism: Helicobacter pylori 26695 # 3 187 2 185 187 159 47.0 4e-39 MKRIIIGISGASGAGLGLRFLKALPKELEKYCVISNGAKQVLFSEEGQNEYLEFEAIQAK DNKIFMLEDSDMGACIASGSFVCEAMAVIPCSQNTLAKIACGISDTLITRAASVMIKEQR KLLLSPREMPLSPIVLENMLKLSRLGVIIAPPIMGYYAGDNLKSIEEMLIGKWCDSLGIF YKYNRWGEK >gi|197325096|gb|DS990370.1| GENE 2 570 - 1466 1196 298 aa, chain - ## HITS:1 COG:HP1477 KEGG:ns NR:ns ## COG: HP1477 COG1261 # Protein_GI_number: 15646086 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones # Function: Flagellar basal body P-ring biosynthesis protein # Organism: Helicobacter pylori 26695 # 94 295 18 215 218 76 28.0 5e-14 MLQRILGIFLFFGITLYGLEYFVLEEEYSFSENKIYAKTLFPQLDHNFLLLEIPTNSSNF QIKSSQLIALFEKEGIQMGAKSSVVTFKKGIKGDIEGIKNYIAGLFLQEYKKNNIKIRSI ELEQITPTDFNSNAIREIDFHSKLLKRKEGTFDVVIEENGRNKKVFFKYNLDATLEGMVT IDEISGGQTITYQNIRVVEIPFDKIGSELMRSDEIGKVAVRSYTPKEVLVTHDRLVAKRV VKKGDKIVVSVQEEGVVLEFVLEALKNGAIGDVIRAKALEGKKTYQVKVIDEGRGILQ >gi|197325096|gb|DS990370.1| GENE 3 1467 - 3617 1918 716 aa, chain - ## HITS:1 COG:alr7635 KEGG:ns NR:ns ## COG: alr7635 COG2217 # Protein_GI_number: 17158771 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Nostoc sp. PCC 7120 # 3 714 2 750 753 432 33.0 1e-120 MTEVVKLNISGMHCSACSATIENNLKKVSGITNIKINAISGRAKIAFDSTKVSEQEIVEL ITSYGFPASKDNAKELEILYIHSLKKRLWIGIPLFLLIFILHMSGFHNAWNSTIQLILAT IVQVYCGYPFYVGAKSFFKTKSADMNVLIALGTSVAYLYSLYLFVIGESNGYYFEGSSAV ICFVLLGEFLKSKAKKKAGDELESLVKILPSQARILKNGKAEWIAINQIKKGDECLVVSG EKIPLDGIVIKGNAEVSSAHINGEEMPRVLEVGSEVIGGSLVLNGEITIQSSKDSNEFFV YEMLDLLELSQTQKPPIGKMADKIASIFVPSIVILSLVAFVFWWMMGMGFAFSLSIAAAI LVVSCPCALGLAVPLAIVCASMRAKKSEILIKSPEIYERARQIKTIVFDKTGTLTKGEIT LKNVELVEKNAEFNLNFLASLVYAMQENNPHPIAKAFLEYFKADKQAIKLQEKEYLIAKG VRAKYQKKEYFLGSLGWIEEILGRIEKIKSRENVIALCDNEKLLALFYLQDSIKNGAKEV VESLKIKGIQSVILSGDNIESVERVAKSVGISRFYAGVNPTQKAEVVAKLAQEGGVCFVG DGINDALALKQANFGISFVNATELAQEIGDVLLLKDDLKGIIKVFEISFATLSNIKQNLF FAYIYNIVLIPIAAGVLYPAFGIILQPAFAGMAMALSSVSVVSNALRITKLKLKGE >gi|197325096|gb|DS990370.1| GENE 4 3805 - 4830 1199 341 aa, chain + ## HITS:1 COG:jhp1016 KEGG:ns NR:ns ## COG: jhp1016 COG0208 # Protein_GI_number: 15612081 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Helicobacter pylori J99 # 4 341 5 341 341 519 75.0 1e-147 MLHRKKIYNPSSNESVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMT QDKRDYADGLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEE ALHSQSYAVMVESISANTDEIYDMWRSDMQLKAKNDYIAEVYEQLATNPIERNIIKAMFA NQILEGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINSVKKESPEL FTKDLEEEVIEMFREAVKVETAWGEYITQGQILGLTSEIIQEYIKYLADERLRRIGLPTL YNAKHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGSINFDDF >gi|197325096|gb|DS990370.1| GENE 5 4820 - 5542 683 240 aa, chain + ## HITS:1 COG:aq_103 KEGG:ns NR:ns ## COG: aq_103 COG0388 # Protein_GI_number: 15605691 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Aquifex aeolicus # 5 209 2 211 246 120 35.0 2e-27 MISKQLYTLQFKTKQNFEENLAHFKNLILECESDSVILAPEVALTNFCYQRMEEASEFAK EATETLLKLSSEKTIITTMIEKYKNGFYNNLKVFHKGELLHKQSKHKLFPLGNEHLHFQA GNIEEISPFMIDGIKCGAINCFELRFIELWQKLKGCDLIFVPAQWAKERKDHFQTLTKAL AITTQSFVMASNSANDSMGGGSAIITPFGYATQDDSQEIINLKANFNDVAKVRKFIDIGL >gi|197325096|gb|DS990370.1| GENE 6 5542 - 6168 718 208 aa, chain + ## HITS:1 COG:jhp1017 KEGG:ns NR:ns ## COG: jhp1017 COG2518 # Protein_GI_number: 15612082 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-L-isoaspartate carboxylmethyltransferase # Organism: Helicobacter pylori J99 # 1 208 1 209 209 246 57.0 2e-65 MQSIKTAQMVREITRQFPLSQNVQNALLKINREIFVPEGFRHLAYSLDALPMGASQWISS PLTVAKMTEYLQCEGADNVLEIGCGSGYQAAILSCLVRRVFSIERIEKLLNEARLRIKTC NLSNINTKLDDGQKGWSAYAPYDRILFSAVATTIPQEIFEQLQIGGILVAPIQKGNLQII TRFYKHNHSITSEELDSCIFVPIQNGIE >gi|197325096|gb|DS990370.1| GENE 7 6172 - 6918 973 248 aa, chain - ## HITS:1 COG:Cj1531 KEGG:ns NR:ns ## COG: Cj1531 COG0253 # Protein_GI_number: 15792839 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Campylobacter jejuni # 1 240 1 239 249 213 47.0 3e-55 MFFSKYSASGNDFILMHTFRYKENSYSELAKKICHRQEGIGADGLIILKPHLEYDFEWEF YNADGSVAEMCGNGSRAAAMYARDLGLAGERQKFLSKAGVIGVSIEGNWAESALSKADIL QKEISEFGVKWWLLNTGVPHLVCENANLAFLNKEDLRFLRHKYNANINIASLQDNRVLAR TFERGVEDETLACGTGMAAMFYYLFLLGKVSNPCLFNPASGEDLYLREDKGTLYLKGEVR KICDFVKD >gi|197325096|gb|DS990370.1| GENE 8 7022 - 8338 1440 438 aa, chain + ## HITS:1 COG:jhp0588 KEGG:ns NR:ns ## COG: jhp0588 COG0008 # Protein_GI_number: 15611655 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Helicobacter pylori J99 # 1 437 1 436 439 457 54.0 1e-128 MLRFAPSPTGDMHIGNLRAAIFNYILCMQRNEKFLLRIEDTDTARNIEGKDKDIMFLLTL FGIKWDMLIYQSDNFPRHRQLADYLISQDKAFYCYCTKEFLDQKREESKAKHEAFRYDDS WATLQKDSNPHPVIRLRGSKVAMEFTDKIKGKIEFSPNELDSFVILKENGIPTYNFACAV DDMLYDIDFIVRGEDHVSNTPKQMLIHQALNYQKNIEFAHLPILLNEEGKKMSKRDNASS VQWLLNEGYLPQAIANYLILIGNKTPCEIFTLKDSIKWFDIQNIAKAPAKFDINKLRFLN REHFKLLSEQDLAVLLGYKDSSIGALAKLYLQESSTLNELREKVDRIFMKKSLLLESTME FQEEIKTLQNTLQTMLKTQDFTKEDYENFKSQAMNHSNLKGKKFFKPLRFLLTGYEHGPE LSDLFPILRLYLQDIIRS >gi|197325096|gb|DS990370.1| GENE 9 8340 - 8474 179 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVLSTFIQAVAQILSMAINIYIWIVIIAALISWVRPDPYNPIVH >gi|197325096|gb|DS990370.1| GENE 10 8837 - 10462 1615 541 aa, chain + ## HITS:1 COG:jhp0590 KEGG:ns NR:ns ## COG: jhp0590 COG0741 # Protein_GI_number: 15611657 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Helicobacter pylori J99 # 1 539 1 554 560 282 32.0 1e-75 MKVLFLLFSLLLCASANSQNLTLDYLKDQPKGISRDFYIWLFLQQDINPKEATEAYNLAL RKNAKLFGLYYKKGNNKTLSKRTICQQMKLQKLIKQDSQCIAYGLTLKKAETLEPKTLIQ LSKKLQNTDLILATQLKILASKKPFNELIKTDAKIFSDFYFGVSSNYRKQFLNAPLPKQT LLNYISQKHPPFMKVLRQAILNTDMQVFSHSLLQVSPQEILSFLDDESAFYLGLNAIKNK NTSDSLDFFIHSSEIAKYSFEKNRGLFWAYLASKDSTYLQKLSQSKSMDLYTLASLEFTN NKPQFEILYDIQTADTFAKWDIKDPFEWEKIRDSYKNQTPKNKEALLQKVNHLNTKPHFF WLNKEPNKEYFLKPFPTIMNRFNNDTQALLYALGRQESLFIPTAISTSYALGVMQLMPFN VTAIAKQMGESEKITYQDMFDPAINIPYAEYFTRPLLKEFKHPLFVSYAYNGGPGFTRRL LQTKQLFRKDNPLDPWYSMEMIPYEETRKYGKKVLANYIIYQKSFGKEIDLQNTLQDTLI Y >gi|197325096|gb|DS990370.1| GENE 11 10529 - 11803 1392 424 aa, chain - ## HITS:1 COG:HP0169 KEGG:ns NR:ns ## COG: HP0169 COG0826 # Protein_GI_number: 15644798 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Helicobacter pylori 26695 # 5 424 1 420 422 602 68.0 1e-172 MDKNLKKPELLSPAGNLRKLKIALEYGADAVYGGVSHFSLRNRAGKEFDYESFAKGVEYT HKKGKRIYVTINGFPFNSQIKLLEAHIRKMAELNPDAFIVAAPGVVRLAKEIAPQIPIHL STQANVLNVLDAKVFYEMGVKRIVAARELSLKDAIEIKKALPDLEIEIFVHGSMCFAFSG RCLISALQSGRVPNRGSCANDCRFDYEYYVRNPDNGVMMRLVEEEGVGTHIFNSKDLKLM EHMPLILESGVIDSLKIEGRTKSSYYAGITALAYREAIDGYFNGNFELEKYEKELETLKN RGFSDGYLIHRPYEKNNMQNHLTAISEGSYQVNAEVSEDGKFALCRHTIRVGEAKEIVSP NEASICEGKNELGEIYTQDDKKFMRFFKIVLENGKEVDSIHSGNENRIALPLPLPPFSFL RQKL >gi|197325096|gb|DS990370.1| GENE 12 11809 - 12510 967 233 aa, chain - ## HITS:1 COG:no KEGG:WS2123 NR:ns ## KEGG: WS2123 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 233 1 244 246 202 52.0 1e-50 MTQEELDALLNENVLDAVEDKATNEEKEAETKEDKTESESTQGIKTEDFRIDSEASWPPP PPTTEHKVVHQLDDVTRDSEVKATETFDKLELINNAGMDIEEGLAKIDKFIKSQEAMLQK LHQKFPDFHTFSQQLEEVAEVKSVMETLSNASQDISNASLEAMDIMQYQDIHRQKIERVI NVMRALSRYMSSLFEGKVDDAKRVSSAVHIQGDNTENVVNEEDIEALIANFGK >gi|197325096|gb|DS990370.1| GENE 13 12697 - 13845 1300 382 aa, chain + ## HITS:1 COG:STM1522 KEGG:ns NR:ns ## COG: STM1522 COG2814 # Protein_GI_number: 16764867 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Salmonella typhimurium LT2 # 8 379 12 383 396 290 46.0 4e-78 MQDKIKIWLGVLAISLGAFILNTSEFVPIGLLSLIAQDFNMSEAKVGFLITMYAWVVALT SLPLMLLFSKVELKKLLLCVMTLFVASHILSSLANDYITLVISRIGVAFSHALFWSIATP MAVRAAPEGKQSLALSFVVTGTAIAFIAGLPLGRVIGLYLGWRTTFLVIGIVAFLVLLVI WRVFPTMPSTGGISIRELPQILRTPHLLSVYLLTILLTTAHFTGYSYIEPFLAQIAHFDK TEITLLLVAFGAIGFLGSFLFTKYHDNHILGFTYFALFGIMASLFVLQIFAYSGFSIVFI CIFWGLCITIFNLTFQSKIIHLVPKATSIAMSMFSGIYNIGIGGGAFIGGIVVDKLEVGY IGYVGGFIALLGCVYYLLIKKV >gi|197325096|gb|DS990370.1| GENE 14 14028 - 14984 505 318 aa, chain + ## HITS:1 COG:BS_ykcC KEGG:ns NR:ns ## COG: BS_ykcC COG0463 # Protein_GI_number: 16078354 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 20 297 24 303 323 63 24.0 4e-10 MNVLDSRLISVAILNRNIDFKKLQEFQDVLKAKFSYFEILLINPKFTTSAKEVENDDIIK NSPNLRILKTSNNIDKNLYYQIFLRNCIGDCIAFFDLEKNSFQDLLEMLGIANKYDIVIG VRKKKNQNLFQKIISYMFYQFIRLFYHYDVRQDYSDFYILNRKVIHYLLKEKTNIYLLRL IQFDTCFSKYEYYFIPIGVGEKVNFFDSVGLGIDIVIQNSYRTLRLATILSLCASFFNFL YFIYAMGSYFFNINVMGGWTSTSAYSSIINFCLFLVLAIFGEYLRIILMRTKHNNLHELV EEESNFQLYIEEKNIRNS >gi|197325096|gb|DS990370.1| GENE 15 14984 - 15706 372 240 aa, chain + ## HITS:1 COG:AF0581_1 KEGG:ns NR:ns ## COG: AF0581_1 COG0463 # Protein_GI_number: 11498189 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Archaeoglobus fulgidus # 2 215 56 265 280 127 35.0 3e-29 MLNIVFPVLNEEDSLEKGIAETISFLNSNNIPYSITIADNGSTDKTQSIAQEISAKNKNI YYLKLKRKGVGLAFRESIKYNTQHLKCPYIGYMDIDLATDLKHLKEVYSLLKKGDKIVVG SRLLKNSKVSGRSIKREITSRALNLILKILLGVKFSDAMCGFKFYDTKTAEFLVNNCGID DSWFYCAQMLIVAEAKGLKISEIPVVWQDDPNSKVKILSLSQIYLKEIFKLLYKKIKRAI >gi|197325096|gb|DS990370.1| GENE 16 15703 - 16524 420 273 aa, chain + ## HITS:1 COG:BH2703 KEGG:ns NR:ns ## COG: BH2703 COG0673 # Protein_GI_number: 15615266 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Bacillus halodurans # 45 269 64 312 329 59 25.0 6e-09 MKSIIIGNGHWGNILKKYIEQDCNFSILEIFGRDFSPLKIPKTTQAAFIATPLQSHFKLA LECLKLGIHVFVEKPTCKSSKEFDILQSVAEENGVRIYTDYIYLTSPSIIKIRENLSSLN NITSVKATIKQYGKFYDGESALEVLGVHFLSVFVFLFGSLELIEKNNLNPHDNDFLFNSK GITIKLESSLISKIKERTMNITAENGTIAFDMLSADTVKMTINNKDMTFSFDEKNNLVNS LRKFYDILHNKNKYMEHIRLSSNVMKILDECNS >gi|197325096|gb|DS990370.1| GENE 17 16566 - 17618 480 350 aa, chain + ## HITS:1 COG:no KEGG:Despr_0343 NR:ns ## KEGG: Despr_0343 # Name: not_defined # Def: FAD dependent oxidoreductase # Organism: D.propionicus # Pathway: not_defined # 2 346 25 367 401 339 49.0 1e-91 MLGIELKKRFKKVLIIEKEEDILRRASLINQARVHGGYHYPRSLVTAARSLKNFDRFCKD FSEAIKKDFEKYYVISRIGSKTNARQFYQIFQKMNAPISKAPNHIYNFFNRDMIEEIFCV REYAFNANILREILSHQLKKLNCEILLDLEVKSVNHRNNEIEVATQKQSFFADHVFNCTY AGLNKILKNSNLPLLNLKSEVTEMALIEIPEEIRNLSFTIMDGEFFSIMPYPAYKHSNGC LSTLSHVRYTPHSSWLDTKHFHDGYSVLKNTKESNFIYMLKSAMRFIPLIEKSNYINSLF EIKVVSINNENDDGRPIVFTKDYGIKNFSNILGGKIDNIYDILGVLKNET >gi|197325096|gb|DS990370.1| GENE 18 18075 - 18290 143 71 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLILKKPKYCQMGNFHFFIVATKNNKNKKAIIAIPINSLDIPAKNPKINADKERNIETFR EGVFFVPLFSQ >gi|197325096|gb|DS990370.1| GENE 19 18712 - 19110 361 132 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418889|ref|ZP_03656895.1| ## NR: gi|224418889|ref|ZP_03656895.1| hypothetical protein HcanM9_06395 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1197 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1197 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 132 369 500 500 256 100.0 3e-67 MDLSLFQLHGHIAPRAELGKDLTLIAMSVFMFRELYANHPRFIGKLIIGQFIIGILFASL GSYSVWKQSNYIENASSKEGMQSEVVLPKDIRFNKIIEKYFLDYSLITNDPQNWVNQVIA KYYNVKSLYIEK >gi|197325096|gb|DS990370.1| GENE 20 19224 - 19535 176 103 aa, chain + ## HITS:1 COG:no KEGG:CFF8240_1391 NR:ns ## KEGG: CFF8240_1391 # Name: not_defined # Def: GtrA family protein # Organism: C.fetus # Pathway: not_defined # 1 93 1 94 97 64 49.0 1e-09 MAFGVFAEMANFIGYCMGIIISFMLNSQFTFKAKHNYAFLRFCLAMGVSYLLNLLTLMFC YRILLLNPYLSQIFAGIIYTGSGFLFSKYFVFKEQCTQTETFK >gi|197325096|gb|DS990370.1| GENE 21 19652 - 19849 204 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418891|ref|ZP_03656897.1| ## NR: gi|224418891|ref|ZP_03656897.1| hypothetical protein HcanM9_06405 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1199 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1199 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 65 1 65 65 114 100.0 2e-24 MYPINLPEEELKNKVATDFFSPNPQSRSIKLDKQAKEILKNLNSTQILGRVDFCVSFNAQ KNLFI >gi|197325096|gb|DS990370.1| GENE 22 20192 - 20824 611 210 aa, chain + ## HITS:1 COG:CAC1491 KEGG:ns NR:ns ## COG: CAC1491 COG4185 # Protein_GI_number: 15894770 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 6 171 3 168 187 134 43.0 8e-32 MVNQPTVTIFAGVNGAGKTTLYFLAQEKGINLGYRVNVDEIAQSIGDHRDRQTQVRASRI AIKMRKVHMDDKLNFNQETTLCGKSILNLFDELKENNYKINLHFVGLDSPQTAKERVKIR VSKGGHDIEPHLIDKRYYESMQNLLKVIPLCNEILVYDNTKNYELIAKITNEKIDILKNV EWFNNLISEKIKSQNYSYDNEYNYSSRIKL >gi|197325096|gb|DS990370.1| GENE 23 21142 - 21459 383 105 aa, chain + ## HITS:1 COG:XF0325 KEGG:ns NR:ns ## COG: XF0325 COG2452 # Protein_GI_number: 15836928 # Func_class: L Replication, recombination and repair # Function: Predicted site-specific integrase-resolvase # Organism: Xylella fastidiosa 9a5c # 34 100 34 99 104 89 64.0 1e-18 MNYYKKGLTKLLNLILEGQVKRLVLTHKDRLLRFGAELVFAICEAKEVEVIIINKGDENI KFEEELAKDVLEIITVFSARLYGSRSKKNKKLLDSMQEVINDNLS >gi|197325096|gb|DS990370.1| GENE 24 21443 - 22693 784 416 aa, chain + ## HITS:1 COG:XF0536 KEGG:ns NR:ns ## COG: XF0536 COG0675 # Protein_GI_number: 15837138 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Xylella fastidiosa 9a5c # 46 377 51 360 390 239 38.0 8e-63 MTISHKIELIPNNKAKTYFKKAFGCSRLAYNWGLAKWQEYYKQGIKKSHLDLKKEFNSIK KEQFPFVYEISKYATQQPFIYLNLAFQAFFRDLKKGKLSYPRFKKKKDNQDSFYLGGDTV KIIQKEKAYYLNIPNLGYIKLRENLKFKGKIHSVTISQKANRFYASFSVNIDENEFNATH KQALQTKQGLGIDVGLKSFVSLSNGLSIQAPKPLYKLTRKLKRVSRQLSKKQHPKTKGDA TKKSNNYIKQSLKLNKLHAKIANIRSDFLHKLTSSLVRHYAYFGLENLNIKAMVKNHRLA KAISDVSFYEFKRQLQYKSLYYKREVLEVNRFYPSSKQCSQCGSIKENLTLKDRIYECEN CGMKIDRDYNASLNLYNHITQEIGQVLPKSTPEDLTALQVDLAINNIATSKVETGI >gi|197325096|gb|DS990370.1| GENE 25 23041 - 23757 534 238 aa, chain + ## HITS:1 COG:no KEGG:TEQUI_0162 NR:ns ## KEGG: TEQUI_0162 # Name: not_defined # Def: hypothetical protein # Organism: T.equigenitalis # Pathway: not_defined # 5 216 4 214 236 212 54.0 8e-54 MFEAYQKARIALLKEILPLFGGNFVLKGGTALSLFYGLDRYSEYLDFDAKSNNMNFIKRL KNHQNFREWNISVKKDTAVVFRAMLDYGAYSHLGAYPLKIEVSSRNKSLLQNNLLNYKEI NGINVYSIKELINMKTTAFSGRDKIRDFYDLGFLLKEYPQHFSKDNLLSIHQKITYAGEE ELDLLLLEEIEKHKLVTNKAIKTDNYANRILEQINTLITQLSLEYDKQEYNQDNIRIK >gi|197325096|gb|DS990370.1| GENE 26 23757 - 23933 138 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418897|ref|ZP_03656903.1| ## NR: gi|224418897|ref|ZP_03656903.1| hypothetical protein HcanM9_06435 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1205 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1205 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 58 1 58 58 103 100.0 3e-21 MSREVLYISGWEALNIPNEKNQIADWHPYLLYYKNNPLQFYSSKDSVLKEKGIKKKDI >gi|197325096|gb|DS990370.1| GENE 27 24159 - 24563 450 134 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418899|ref|ZP_03656905.1| ## NR: gi|224418899|ref|ZP_03656905.1| hypothetical protein HcanM9_06445 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1207 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1207 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 134 1 134 134 224 100.0 2e-57 MKEKLRMFFSEQDRYGVYFLEKTALFMIFVGGIFTLIITSIVSHFVDLGEFSRDRSGGFI SIMRFTFACIAGQLIVLLFYVPFCRDNFILRNFFLILLNIISIFILVCSVIPGENAEPEE IVKLVKEMFSKESK >gi|197325096|gb|DS990370.1| GENE 28 24963 - 25274 272 103 aa, chain + ## HITS:1 COG:no KEGG:CJA_3633 NR:ns ## KEGG: CJA_3633 # Name: not_defined # Def: hypothetical protein # Organism: C.japonicus # Pathway: not_defined # 2 101 5 100 179 63 39.0 3e-09 MTSIQLLKVLDEIDKNLRISVLSAKQLRLFFPNESKSVFSVGLNRQVKNGLLVKLCNGLY FNKRSRHIPPNFLEYVATKIRAKETFYLSLESVLSENGLISPS >gi|197325096|gb|DS990370.1| GENE 29 25683 - 26561 750 292 aa, chain + ## HITS:1 COG:no KEGG:RBRH_02471 NR:ns ## KEGG: RBRH_02471 # Name: not_defined # Def: hypothetical protein # Organism: B.rhizoxinica # Pathway: not_defined # 2 248 11 264 307 165 38.0 2e-39 MSDLENIADSYAFELGNTKDAVIKEILHYDILQSLSQSDIANDIVFQGGTSLRLCYGNNR HSEDLDFALKDEKVDFDEALLKEFEKIFVSTIRNKYNLEAELSYSKENEDFVKKWTAKVF LPISHRKAKINIEICDVPSYDNKVMNVINHYSLKNNDDLIIRVKSLEEILADKILALGCR KYIKYRDIWDIKWILDKNTSINLEWINNKICDYHASNFPIKLAQKLEELQENKEAHNNGF INEMSRFVKPVLFEKYKKLDFFAETIDEVLENGENVLELLKEQEYTKYLRKS >gi|197325096|gb|DS990370.1| GENE 30 27912 - 28673 545 253 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 10 249 1 240 245 214 43 3e-54 MSNHMSNEVLLSVSNLVKKFGDTLVLDSVSLEVKKGEVCAILGPSGCGKSTFLRCINGLE SINGGSITFNGEVINAANDSKINWSKIRQKIGMVFQSYELFPHLSVLDNILLAPCKVQKR KKEEVTTQAIKLLERVGLAHKKDSYPKELSGGQKQRVAIVRALCMNPEMMLFDEVTASLD PEMVKEVLEVIKELATQGMTMILVTHEMKFAQNVADRIVFFDSGKIAEIATPQEFFTNPK SERAKRFFNIFEF >gi|197325096|gb|DS990370.1| GENE 31 28682 - 29335 634 217 aa, chain - ## HITS:1 COG:SP0710 KEGG:ns NR:ns ## COG: SP0710 COG0765 # Protein_GI_number: 15900608 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 214 6 221 225 218 55.0 8e-57 MEILFDPQNILRLLQGVFVTFQIAFIAIFFSCIFGFVLGYLMTLPNRFLSFLCRFYLESI RIIPILAWLFIVYFGFSSFLNLNGIGACILVFSLWGIAEMGDLVRGAISSLPRHQSESGR ALGLSEIQIQVFIILPQSFRRLLPPLVNLFTRMIKTTSLAALIGVSDMLKVGQQIIEVNL IHYPQASFWVYGGIFALYFLLCYPLSLFAKHLEKKLV >gi|197325096|gb|DS990370.1| GENE 32 29335 - 30003 613 222 aa, chain - ## HITS:1 COG:HP1169 KEGG:ns NR:ns ## COG: HP1169 COG0765 # Protein_GI_number: 15645783 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Helicobacter pylori 26695 # 4 222 1 217 217 199 57.0 3e-51 MTALYLDLDFIQNAIPVFGKALWLTLHLSFFGIVFSILLGFFIALVQFYKVRFLSALCQA YIELSRNTPLLIQLFFLYYGLPQVGLQLTSYTCALIGVIFLGGSYMAESFRAGLESVGRI QLESGRSLGLSEMQLMFYVVLPQSLAVSLPFIGANAIFLLKETSVVSAIALADILYITKD LIGSYYKTNETLLLLVLCYLVVLLPLSFLFLALEKYYKRKMA >gi|197325096|gb|DS990370.1| GENE 33 30151 - 30579 348 142 aa, chain + ## HITS:1 COG:HP1484 KEGG:ns NR:ns ## COG: HP1484 COG1981 # Protein_GI_number: 15646093 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Helicobacter pylori 26695 # 3 142 8 148 148 128 48.0 4e-30 MTYYYVKVFHIISFVTWMAMLFYLPRLFVYHAEHKDNKGFCEVIKIQEAKLYNFIGYPAI ICTLLSGIWLLVLEPSWLKGGWLHAKILLIVILVIYHFSLHHFLVAFREDRCQKSGKFFR MYNEVPTLILIIVTFLVIIKPF >gi|197325096|gb|DS990370.1| GENE 34 30594 - 32006 1386 470 aa, chain + ## HITS:1 COG:Cj0931c KEGG:ns NR:ns ## COG: Cj0931c COG0165 # Protein_GI_number: 15792260 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Campylobacter jejuni # 4 460 3 458 460 505 57.0 1e-143 MKNNKLWGGRFQEKASEILDLFNASLPFDKKLYKQDILGSKIHSQMLSHCGILTQEESKQ ICQGLDQIQAEIEKGEFTFDISDEDIHMAVEKRLIEIIGEVGKKLHTARSRNDQVALDFR LFVLDSNRQIRVLLLELIQTLLNIADSHTTTILPGMTHLQHAQPVNFGFLMCAYACMFVR DFERLSDSFKRNNYCPLGSAALAGTPYKTDRFYTAKALGFTAPTLNATDSVSDRDFALDF LYDLSLIAMHISRMAEELVLWSSYEFRFITLSDSYSTGSSIMPQKKNPDVPELLRGKSGR VYGNLFSLLTIMKGLPLAYNKDTQEDKEGVFDSFETLEISLKILNDLLKTMQINPKEMKE ACQKGHLTATDLADFLVQSCNIPFREAHHITGKAVTYAESLNKDLSQLSAQELCSVDSRI PPKAHNALDLEASMNSRDSYGGTSTKATQTQIQSLLAWLQIAKSGECNER >gi|197325096|gb|DS990370.1| GENE 35 31996 - 32715 369 239 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 [Kordia algicida OT-1] # 11 238 1 221 221 146 38 8e-34 MSDKQQKIISMFDDIANSYDLANRVMSCGIDIAWRKKACNLAFKNLSTENLQSLKILDVA CGTGDMITHWQKNAKNAKINLQKIVGADPSSGMLEVAKKKLPQIDFTQCEATKLPFLDNE FDILSIAYGIRNVVERKKALSEFARVLKKGGILVILEFTKCENPKMLEKFMGFYTKNILP FVGGIISKNYRAYKYLPDSIEEFLTANKLNLELQENGFEPLYTKSFSANVCTLFVARRK >gi|197325096|gb|DS990370.1| GENE 36 32722 - 34560 1988 612 aa, chain - ## HITS:1 COG:HP0821 KEGG:ns NR:ns ## COG: HP0821 COG0322 # Protein_GI_number: 15645440 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Helicobacter pylori 26695 # 15 603 4 594 594 588 53.0 1e-168 MQPLEQKLPPLNDTLLEILKKLPNQSGVYHYFDSEGRLLYVGKAKNLKNRVKSYFRFTPK LSVAPNLSARITQMVSQIAFMRYIVVENENDALILENSFIKQLKPKYNILLRDDKTYPYL CVDMSVDFPRIVLTRKILKSSNIRYFGPYSSGARDLLDSLYEVFTLAQKESCLKGKKACL FYQIKRCLAPCEGKVSKEAYQEILQKALECIHNPKKILSILEKKMEFLSENLRFEEAMVL RDRISKIKQINPLSSVDFARVEDLDIFALESEGNRGVLVKFFVREGRVVSSATNVIKSQY EINFEEVYTQSLINYYSKTLPIKPKQVLIPYDFGEKREELEAFLAKQLGKKIPIHFPKSG DKKKLCDLALQNARETLKINVTNEEALLLALKELFSLQSIPYKIEIFDTSHHRGKQCVGA MVVYEEGFIKESCRHYLLEGSDEYSQMREMLERRIADFSTDSPPDLWVLDGGIGQINLAK DLLNSAGVNLEVIGIAKEKLDAKAHRAKGSALDILRDEKRQEYRLSSSDKRLQFLQKLRD EAHRFAITFHQKQKQKTMQQSKVLEIKGVGKATQKRLLSYFGSFEAIKEASLEELEKVLS KNLAKSVYESLK >gi|197325096|gb|DS990370.1| GENE 37 34548 - 34895 226 115 aa, chain - ## HITS:1 COG:no KEGG:WS1606 NR:ns ## KEGG: WS1606 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 115 25 138 141 84 42.0 1e-15 MLPFSLRQGIHFCYSKNSTLYFVLKHPCFKQEFDYKLTIIKQLLKQYQKIQNKLLDIKDL KAFVGKSAYQKSLQESTQEVTSYGELSSGEFKNLAKNQEIYEIFEEIKKAIVCNH >gi|197325096|gb|DS990370.1| GENE 38 35091 - 36557 1725 488 aa, chain + ## HITS:1 COG:CAC1024 KEGG:ns NR:ns ## COG: CAC1024 COG0029 # Protein_GI_number: 15894311 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate oxidase # Organism: Clostridium acetobutylicum # 1 421 3 400 434 308 40.0 2e-83 MQYDVIIVGAGIAGLYAALNLPKELKVLILCKDQPWECNTFYAQGGIAVAKNQADIPLHI TDTLKAGAGMCNEDAVATLSKESLEVLEDLIARQTPFDRDSNGNLLFTKEAAHSTSRIIH AGGDCTGRVLHSHLIAQITHTLWKNASVTELLIDDDHCCGVSVLTKRGNYNLYANNVILA SGGVGALFEYHTNAYTISSELHGMILENGLKLKDMEMLQFHPTVFVQTTHARKMLLSEAL RGEGAFVVDFWGKRFLFDYDSKGELAPRDKVARSIFDYKLKLKEKYPNAKPEELEVYLDF SAFDKDFFYERFPNIARNLNSVGFDVPKDRVPISPAFHYCMGGIQTDNVGKVLGMQNLYA VGECACTGVHGANRLASNSLLEGLVFSRRATQDILANSLSFKIREFPLHTQILQKERDEN LKALLRHLMWNKVGIIRKKSGLNEALGGVEVMLQSGIGRLLKLRLLTAQNIIQSALTREE SIGAHYIQ >gi|197325096|gb|DS990370.1| GENE 39 36654 - 37490 1073 278 aa, chain + ## HITS:1 COG:PA0883 KEGG:ns NR:ns ## COG: PA0883 COG2301 # Protein_GI_number: 15596080 # Func_class: G Carbohydrate transport and metabolism # Function: Citrate lyase beta subunit # Organism: Pseudomonas aeruginosa # 10 276 7 270 275 128 32.0 1e-29 MSNSTYPKAKSLLFVSGIKPENFTPSFESEADAIILDIEDSVPSDRKDEGRANILNFCRN HSQYKFFVRVNDAQSPFFADDMKFLKELGLDKLHGIMLAKTEQKEHVESVNAALGKIPLL LLIESAMGVQNVNLTASQPNVRQLAFGAFDMILDLGLRDGEGKDFMLNYVRTQIALASRI NNLLPPINRVFPNTRDESRLKINMELAYSMGFGGSLTFYPNQLPIINAIFAQGNNQIEWA KEVMRLVAIHKGEPFSFEGNVVDLPMIKKAQGILERKY >gi|197325096|gb|DS990370.1| GENE 40 37518 - 39308 2116 596 aa, chain - ## HITS:1 COG:Cj1502c KEGG:ns NR:ns ## COG: Cj1502c COG0591 # Protein_GI_number: 15792816 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Campylobacter jejuni # 331 596 231 495 495 374 76.0 1e-103 MEVVNINTPIAVMFVAYAALMLFIGFYFYRQNKSSEDYFLGGRSMGPVVSALSAGASDMS GWLLMGLPGALYVSGFIDSYIAIGLTIGASLNWIFVAKRLRIYTSVVADSLTIPDYFETR FSDDKHILRVVCAVVILIFFTFYVSSGLVSGAKLFEEVFGIKYSYALTTGTLIIVAYTFF GGYKAVCWTDMIQGLLMLLALVALPLVMLSHIGGLSEAKKYISLSDDSSKKIIEIQGQIP NILNNLQSVESQEKIQSLIAALKNTQDRNISATNLDKNLKNDTQILMLFNQDLNSLVTSS DLAKRLELAVETNDSETLTSLLLAFSKIPFVAKERLQWFSGVSLVGIISALAWGLGYFGQ PHILVRFMSIRSTRDIPKATFIGIGWMVVCLVAACFIGMLGVAYINKFNLTLADPERIFI VMSQLLFNPWIAGILLSAILAAIMSTASSQLLVSSSTIAEDFYKKIFKQEASNAMVLRLG KIGVLIVALIAFVISTDKDSSVLSIVAYAWAGFGASFGSVMIFSLFWSRMTRIGAIAGMI SGAAVVVLWKQFFAYTGIYEIIPGFLVASLAIIIFSLISNVRPGTKAAYQKMLENL >gi|197325096|gb|DS990370.1| GENE 41 39320 - 42799 3076 1159 aa, chain - ## HITS:1 COG:Cj1503c_2 KEGG:ns NR:ns ## COG: Cj1503c_2 COG1012 # Protein_GI_number: 15792817 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Campylobacter jejuni # 382 1157 1 783 784 1192 76.0 0 MKQIIEESLKFAEELQSKIEANISQSEREFHGKMQKLLSNPKNKVMLIELLDRSFRCKDK RASFELIEHTLNKFGIADFFSPFEKFLLYSFITLGRFAPNVSVPFFVSHLRKDTSAMVLD ANESFLKPHMEKRKQNDHITLNVNLIGEEVLGEAESQYRIQKYEEALQSSFITYISIKIT TIFSQINIIDFEYSKNEVVKRLDHLYALAEVEEKRQGVEKFINLDMEEFRDLELTVAAFM ESLSKFNIKAGIVLQAYIPDSYEYLKKLFAFSKQRVQEGKKPIKIRFVKGANMESEETIA SQRGWELPTFSKKIDTDSNYNKMLDFILQDENYKYINIGIASHNIFEIAYAYTRIKEANA FGSFTFEMLEGMSLQCSYEISKLHNLILYAPVCDEAHFNNAIAYLVRRLDENTSEDNFMR YFFNLKVGDANWQAQKALFLKSLEGIKNLDNSTHRTQDRNKELTIKSAYETKVFKNESDT DFILPQNREWAKKIKEKYENLEAYEVYPVISEVIKKADLKHIEVRDKIKNRLIAQVHLAG EKEIKQALEVAKNSKFKEKSFDEIHQILAKAAKIMREKRGDLIGIAALEVGKTFLEIDPE VSEAIDFTEFYPHSLATLIKQNPKTKFAPKGVGVTIAPWNFPVGISVGTIVAPLAAGNAV IYKPSSLSTLTGYMICECLWEAGVPKDALIFLPSKGSDISKYLLTNEAIKFAILTGGEET AYRMLEANPTLLLSAETGGKNATIVSKFADRDSAIKNIIHSAFSNSGQKCSATSLLVLED EVYNDKEFKKTLVDAASSMLVGSPFEFKNKIAALCDEIDPKVQRALDELKPYEEWALKPK FIDDNKHLMSPGIKYGTKKGDFTHMTELFAPILSVMRAKDLKEAIEIVNATGYGLTAGFE SLDEREWEYFHTHIEAGNIYINKPTTGAIVLRQPFGGVKKSAIGFGRKVGIYNYITQFLE ITQEEADNHLLENRISTTLKDLGMSELDKMAQSYAYHYKNEFSVAKDYVDIRGEDNLFSY TKIKNLAYRVCKEDSLRDILGVILAANIATIELLVSFEENPHIQKAKELCQKLGFKVEFL EETQEDFVNKISNYERIRYHLIPNVDDKIYREASRLAKIIIREKPLINGRFELLFYHNEK SVSISYHRYGNLGIRALEK >gi|197325096|gb|DS990370.1| GENE 42 42978 - 44333 806 451 aa, chain + ## HITS:1 COG:SAP017 KEGG:ns NR:ns ## COG: SAP017 COG1055 # Protein_GI_number: 16119217 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter NhaD and related arsenite permeases # Organism: Staphylococcus aureus N315 # 1 450 4 429 429 192 33.0 8e-49 MGYLIFALTMLCIYMRPFKLPIWIFSTLGAMCAYGLNAVSLDDIMLVWKITKPSTLALIG LILFSLAFEKLGFFSHLASHIIPNSHFIHTWKFFVLLIILGSVVSMVFANDGAILVLTPL VLALFNKIDFSKQKLTTPKIKLFASFSPLVVFLLLISFISDFASNALIISNLTNIITAEM FEINFLHFAMMMALPQIFGIFVFIIIAWICFKHFLPHTLHFTLDTPTHSNAHSNPKSNYK PSKITLTLCYILIIILFIGITIGQRYGIELYVFLFSISFIALIYAKALGLIQAKTLLKET PFSVVVFSFGLFIVVFGVKNAGFLSTMRTIFDTIDLAPLLMQIFSVGIFSSLGSSIINNL PMVLLGNLTLQSFELNSLQTQILAFAHLLGCNIGSKLTPLGSLATLLFLLKLKIYNIKIS LLQYISFAFILTFCVLLAALFGLWISTIILY >gi|197325096|gb|DS990370.1| GENE 43 44433 - 45686 985 417 aa, chain + ## HITS:1 COG:AGc2694 KEGG:ns NR:ns ## COG: AGc2694 COG0477 # Protein_GI_number: 15888785 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 3 390 101 468 498 155 29.0 2e-37 MNTYNTLAWLNFFIADVQDGLGPYLGVFLKNHHFLEGQIGLIGTITSLCALLFGVPLGIL VDKTPYKRTLIAFCICAISGSVLLNFLYPTFLFTLIAQLTIALCAVFLAPAFAAITLGIV GRKQYALQTSKNEAYKHTGTAFSAGLSLVCAWYYGITSIFIITILMGIFALLCLALLRNV SINHALARGDEESTTTMFKSKSLKRSFMDKRIMALSFAMFCFHLSNAAMLPLLSQRAHTL GIDSSGAYAAATIIIAQSTMILIALVCGKLIVNPLGGSHRDLHDDSNSKLSKTLFALMAI SLLGLCVRAMIAANYEGLGGMVATQILDGVGAGITGVIVPILVAIVLRGSGHINAGFSFV MTWGGIGGALSGSLGGFVAQYFGYFYAYIVLGSAALLGLIVWSFSWTAFKYLSKNTA >gi|197325096|gb|DS990370.1| GENE 44 45814 - 46848 1007 344 aa, chain + ## HITS:1 COG:mlr4087 KEGG:ns NR:ns ## COG: mlr4087 COG0667 # Protein_GI_number: 13473474 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Mesorhizobium loti # 1 330 1 331 344 325 48.0 7e-89 MKYRYLGNSGQVIPNMILGTATFGGSTELFKKWGSTQVDEAKALIKVCMDLGFNAFDTAD CYSLGDSEIILGQALKDYKRSEVFISTKTGMWMSDNPNDIGTSRSKILQSVEASLQRLQT DYIDLYHLHCYDARTPHIEALQTLNDLVKSGKIRYFGVSNYSGWHLMKMLSVADAYNLQR PVVHQAYYSLGAREFENELMPLGIEEKIGTLVWSPLSGSLLSGKITRSKQNIDDSRLGRG GAWDMDREHLLSIVDELESISKETGYSIAQIALAWVLSRPTISSLVIGATKVEQLKENLQ ASELQLDVEHIKRLDKASQTKLAYPYWHQRFTVDNRDPYPVNLY >gi|197325096|gb|DS990370.1| GENE 45 47287 - 48237 954 316 aa, chain + ## HITS:1 COG:Cj1602 KEGG:ns NR:ns ## COG: Cj1602 COG2958 # Protein_GI_number: 15792907 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 2 316 3 317 318 316 53.0 4e-86 MAKMTFLELAKQILQEAKQPMTYQQIWDMATQKGLTQSLESAGKTPWQTLAAQLYLNIKR QDSIFFIATKRPTTFWLKSRKDELKEDVQELITKEETESLKNTKYKERDLHPLLVYYLAN ATEFRLQCKTIYHEKSKKQISGKDKWENPDIVGVYIPFNDYEPQTLEILKHINHNVCSLF SFELKVKVNFGNLKESYFQAVSNSSWANEGYLVIFEDIEDDVLEELRRLNASFGIGVIKL EANPLDSRVLLSAKRSEIDLQTMNRLVDSNPNFREFVADINKQIKAGADTKIQACFDEVL EEEVLEKYLKNTIYLD >gi|197325096|gb|DS990370.1| GENE 46 48251 - 50434 2000 727 aa, chain + ## HITS:1 COG:jhp0972_2 KEGG:ns NR:ns ## COG: jhp0972_2 COG0519 # Protein_GI_number: 15612037 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Helicobacter pylori J99 # 423 727 17 320 320 473 75.0 1e-133 MNNVEMLVLDFGSQYTQLIARRLREFGVYTEIVPYFESIDSIKAKNPKGIILSGGPASVY EEGAYKPDNKVFELGIPVLGICYGMQYIAYHFGGAVVRAKEQEFGKAQLEILAPDTALFA NVKNNSIVWMSHADKVEKIPQGFSELAKSGNTHYCAIADTKRQIYALQFHPEVVHSECGG EILKNFAVNICRADTSWNMKNFITYEIDKIRKITGIQASNSESNTKATSSNRCGWIYQGY NASDEATQKLYQDYHDFEWGIPQHDDKRLFEQLVLEGMQAGLSWITILKKREAFREAFDD FDPHIVATYDEAKIQELMENPDIIRNRAKIESAINNAKRFLEIEREFGSFAKFLWGYVDN TPLINHFESLEEIPTHTPLSDTIANDLKKRGFSFVGSTGIYAFMQSVGLVCDHLTSCAFG HTDKAKPHKVLCAVSGGVDSSVVATLLYRAIGENLIPIFVDTGLLRKGEREAVEKMFREN LRVPLITIDASEEFLGLLKGVRDPESKRKIIGETFIKVFDGEAKKHNANGEIKFLAQGTL YPDVIESVSVKGPSKTIKSHHNVGGLPDWMKFELIEPLRELFKDEVRALGRELGMPESML MRHPFPGPGLAIRIMGEVNQADLDLLKEADSIFIEELHKWNLYDSVWQAFCVLLNVKSVG VMGDNRTYDNTICVRAVEALDGMTATFSHLPHEFLESVSNRIINEVEGINRVVYDITSKP PGTIEWE >gi|197325096|gb|DS990370.1| GENE 47 50464 - 51450 570 328 aa, chain + ## HITS:1 COG:NMA1500 KEGG:ns NR:ns ## COG: NMA1500 COG0270 # Protein_GI_number: 15794400 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Neisseria meningitidis Z2491 # 23 327 20 337 337 299 53.0 4e-81 MLPEQQSLEIIKLRTMDSKTKPYTFIDLFAGIGGIRRGFEIEGGTCVFSSEIDKFACQTY EANWGEKPSGDITKIEACDIPKFDILLGGFPCQAFSIAGKRKGFKDTRGTMFFEIARILD YHKPKCFMLENVKGLLNHNKGETFQIIKNILEIELGYKVFYKILNARDYGVPQNRERIII VGFKDHNVHFDFPKPYNYSVKLGDILEKTPDEKYTISNRLWESHQQRKELQKAKGNGFGY RLFDENSPYTSTISARYYKDGSEILIAQKNKNPRKLTIREAARLQGFPDDFKIVCSDTQA YKQFGNSVPTKMIHEVAKQIFITLKKQE >gi|197325096|gb|DS990370.1| GENE 48 51454 - 52476 746 340 aa, chain + ## HITS:1 COG:no KEGG:C8J_0132 NR:ns ## KEGG: C8J_0132 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_81116 # Pathway: not_defined # 5 334 3 326 328 137 33.0 8e-31 MCNKINDVVFDNNLYFYTILKILVQCKFTDSQLICFQSLLNKIKNNGSDRLNLNNQLSSY RDTLRSNTKKSNYDELTSLIERNSAMWFYVVNVGIELLLFKDLILAEAKAYTNAKQQMLE KIDKLSIEYDTKNLSLPYGQRVLSSLLCFALTNIERESEFLLTSSNQRIKSVHQLVLQLA NAYHINCNNMFLLIVSESVNQSIRSTAGSSYEERVEATLRPIADDLLSHLHDENIQAMEY DFIFTIKGKKVGVSAKRTLRERYKQNHENVANLNVDAVFLITLGTDLNQDKINSILQKDK YYIIVASEIYNTSEFMQQNTRILSSEDLTRKTLEEVLSKW >gi|197325096|gb|DS990370.1| GENE 49 52630 - 53415 509 261 aa, chain + ## HITS:1 COG:MA2417_1 KEGG:ns NR:ns ## COG: MA2417_1 COG1479 # Protein_GI_number: 20091248 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 1 102 1 111 597 63 32.0 4e-10 MEARENNFKSIVTNENRLDIPFFQRHYTWNEEHWERLFDDLYDSFINNTTHFVGSVILKR NGGNDNFAIVIDGQQRLTTFSILLKVLHDKIDESKRKHFENYLFETYKDDSPKINHSKMD RENYIDFLKVDFPKIPFVESKGLFLQFSALGNSLITLHSLKEQDLPPIGEPLYKDTANKD LKISKITYAKDTKELFINKSLYFEKVESSVWEYKIGGYQVLDKYLKSHKDEAIDFEYFQK IIQTLHKSLEIEREIAKISFI >gi|197325096|gb|DS990370.1| GENE 50 53571 - 55271 1227 566 aa, chain + ## HITS:1 COG:no KEGG:Cyan7822_0072 NR:ns ## KEGG: Cyan7822_0072 # Name: not_defined # Def: hypothetical protein # Organism: Cyanothece_PCC7822 # Pathway: not_defined # 1 565 1 601 603 332 35.0 2e-89 MYLEKIIIKNISAIKNLEFTSSFTKEGNPKPIVIVGENGSGKTTLLSNIIDSFYEIGSAL FTNVARMENTSRNFYKVNGELNLSCNENKGFAIIKYKSKAMQNPIEYIDYINCNTDDIKE FCSLNLQTAIGKIITQFSENNIENLQKEWHTQAHYYQPANRYEEPFWKNPNFNINFKEEK QYNNVYNKELEIITSFEKNYSYIMDIVLDKLADSKEANNILNAIEKILQEIKQDKTSNFR LLHRNFGSRIGIDKDEKPFLSNINQLSLGELTLLNLFINIIRHTDLSNETMDKLEGIVVI DEIDAHLHSDLQSKVLPSLIKLFPKIQFIITTHSPLFVLGMQEEFKDDGFDLLEMPNGTR ISAERFSEFQKAYETFTKTKTFEEDIKENIAKSKLPLVFVEGDYDIRYIKHICKLFQREE ILNSITLSDANGYENLNKIWKNKKVIEYFDKKILLLYDCDTEVENKDSNNIFKRIIPPQK DALFDRGIENLFSKETINKIDKEKPQYIDLNQSHKRIRGEETENYTYSINKDEKGNLCNW ICENGTKEDFENFKVILEIIDEFLSR >gi|197325096|gb|DS990370.1| GENE 51 55669 - 55899 380 76 aa, chain + ## HITS:1 COG:Cj1397 KEGG:ns NR:ns ## COG: Cj1397 COG1918 # Protein_GI_number: 15792715 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein A # Organism: Campylobacter jejuni # 1 74 1 74 74 69 51.0 2e-12 MTIEDLKDGESAIITELDVDTQLKDRFFSLGICKSKKIKKLETSLGGSTILVELDRSCII LRAEEAKAIKVGNINE >gi|197325096|gb|DS990370.1| GENE 52 55892 - 56458 653 188 aa, chain + ## HITS:1 COG:Cj1398 KEGG:ns NR:ns ## COG: Cj1398 COG0370 # Protein_GI_number: 15792716 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Campylobacter jejuni # 4 176 2 174 613 215 63.0 3e-56 MNKKNIKIALVGQPNVGKSLLINALCHSNMKVGNFTGVTIEKAQAKTTYKDYELEIIDLP GTYSLYGYSEEEKITKDFIDNGEYDLIINVVDSTNLERNLLLTTQLLELQKKMILALNMS DEATKEGVQINHKELGNLLGIPCLKISARTKENLHLLLDLILQTHTQNISPNKRVYGNEI ETEILLAS >gi|197325096|gb|DS990370.1| GENE 53 56745 - 58172 1911 475 aa, chain + ## HITS:1 COG:Cj1398 KEGG:ns NR:ns ## COG: Cj1398 COG0370 # Protein_GI_number: 15792716 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Campylobacter jejuni # 29 475 185 612 613 568 66.0 1e-161 MEISPLLQESLNNLYIIYNTKSSKDIFIDDLNAFVSGLVTETLKYENKALPNYTKKIDKI LINKYAGIPIFLILMWLLFQLTFTLGAIPMDYIETFFIGIGDSIKENISNEHIASLLADG VIGGVGAVILFLPNIIILFFGIALLETTGYMSRVAFLLDGFFHKFGLHGKSFIPLVTGFG CSVPAFMATRTLKSRKDRLLTLFIVNFMSCGARLPVYVLFVGAFFPAEQAGNWLFGIYIL GALFGLIMAKILRLSVFKGPDEPFVMEMPKYRIPNWNLVWFSVYNKAKMYLKKAGTFILA ATILIWFASTFPLQEETQAIYAQKIEQANTQEEKEALEFTLQEQLIENSYLGKTGQLIEP IFAPLGFDWKMSVALLSGLAAKEVIISTMGVLYSLGAEVDESSVTLMETIKAIIPLKVAV AYILFIMIYNPCLAATVVFGKEAGGFKYIVYLFLLTTITAYIVAYIGTLIASFLI >gi|197325096|gb|DS990370.1| GENE 54 58294 - 58995 449 233 aa, chain - ## HITS:1 COG:no KEGG:TEQUI_0439 NR:ns ## KEGG: TEQUI_0439 # Name: not_defined # Def: TcuB protein # Organism: T.equigenitalis # Pathway: not_defined # 9 232 141 366 371 181 45.0 2e-44 MAGEQARGDFFAVIPYEYMVNTFGIVSLFVLVALIGGFVRFARAIELSGVNARVFVRSLK DALTLKYLGGHKSEGCTYPNDKRSNARRIFHHFTAYGFVFCFIATSLGAFYHHFLHISAP YDITQLPKIFGSIGGVALCIGVLGLFVLKLIADREIVDEKSVSMDYAFLFMLFIASFSGL LLMFVRESALLSYALWFHLSCIMVFFLMIPYSKFVHIFYRFIALLKYNAQEEA >gi|197325096|gb|DS990370.1| GENE 55 59320 - 59484 245 54 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253827880|ref|ZP_04870765.1| ## NR: gi|253827880|ref|ZP_04870765.1| Citrate utilization protein B [Helicobacter canadensis MIT 98-5491] Citrate utilization protein B [Helicobacter canadensis MIT 98-5491] # 1 53 1 53 370 117 96.0 2e-25 MQTTQPIWTIKETKDDSNIYTIATKSCVICNSCRYCEGLCAVFPAMEKYRELAS >gi|197325096|gb|DS990370.1| GENE 56 59494 - 60891 1595 465 aa, chain - ## HITS:1 COG:STM0691 KEGG:ns NR:ns ## COG: STM0691 COG1053 # Protein_GI_number: 16764061 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Salmonella typhimurium LT2 # 7 464 3 457 467 547 56.0 1e-155 MKLKEFDIIVIGGGNAALCAAISAKEANNNLKVALLESSPKKWRGGNSQHTRNLRSMHDA PTDVLTDKYSEDEFFDDVFKVTKGQTNEEYARFVISHTPEAVVWAKNHGVRFQPSMRGTL HLGRTNAFFLGGGKSLVNAYFACANELGIEIFYEHEALDLIIEDKTCKEVIVLDKQSKEE LRFIAKAFIIASGGFESNLEWLEEAWGEKARNFIIRGTRFNQGKMLKALQKGNAKIIGDP TQGHMVAIDARTPKYDGGIASRVDCVSLGIVVNKYAKRFYDEGEDFWPKRYAIWGRLVAQ QEDQIAFSITDSKVQKCYMPSLFPPIVAQSIEELAQKIGLDSKALQQTITEYNASVVDGD FNHTIQDNCHTKGLEVEKTHWALRIDTPPFYAYPLRPGVTFTYMGVKVNKNAQVYASDEN LFANLFAAGEIMAGNILTQGYVAGFGMSIGTVFGRLAGQNAAKSI >gi|197325096|gb|DS990370.1| GENE 57 60891 - 62198 1250 435 aa, chain - ## HITS:1 COG:RSc3059 KEGG:ns NR:ns ## COG: RSc3059 COG0477 # Protein_GI_number: 17547778 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Ralstonia solanacearum # 8 425 11 421 431 461 55.0 1e-129 MSKAREDAKAIFRVSSGNFLEMYDFAVYGFYAAFIAKIFFPAENEFISIMQSFLAFGMGF LMRPLGAIVLGGYMDKHGRKKGLLVTLTLMAIGTLTIALCPGYESIGVLAPIIIVIGRLL QGFSAGAEVGGASVYLAEIAPKNLRGFYVSWQSGSQQVATVFAGAIGVGLHYWIGDAVME AWGWRIPFIIGCLVVPFIFYIRRTLEETPEFEAKKHQAPKTFAAIFKNMAENYPVIIAGV FFVMMTTVTFYFVTSFTPHFASNILNFTKLEAFIVTAIVGVSNLFWLPVSGFVGDKIGRK KVALFMTFLGMISAYPMLNWLAGMAESGTLTFGKFVLVELWFSFIFGGYNGAMVCALSEI MPKHVKALGFSFSYSITVAIFGGFTPAVSTFLTKYTDNPASPALWLTFAAICSFIASVVI FRRGGFYDRQQQGEH >gi|197325096|gb|DS990370.1| GENE 58 62449 - 63099 729 216 aa, chain - ## HITS:1 COG:BMEII0281 KEGG:ns NR:ns ## COG: BMEII0281 COG1802 # Protein_GI_number: 17988626 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Brucella melitensis # 9 209 18 224 238 92 31.0 4e-19 MQKSNQKNSSDKIYDYVIEAIRQGKFKPKDRIKEQDLIQETGLSRTPIREALGILVNEGI LVQDGKKGLMVSGLDLISITKLYEMREFLEGEAARLATLFVSKVEIEILHNIIEEQKHIS DIAEARANNVLFHEMIYRCSNNNYLFKIMQNLDKSLILLGESTLAKPERIQETYMEHANI FEAIRKGDEKKAQEMARFHIHQAYKIRLERVLKNKS >gi|197325096|gb|DS990370.1| GENE 59 63158 - 63919 408 253 aa, chain - ## HITS:1 COG:no KEGG:HH1091 NR:ns ## KEGG: HH1091 # Name: not_defined # Def: type I restriction enzyme (EC:2.1.1.72) # Organism: H.hepaticus # Pathway: not_defined # 2 250 308 561 563 133 31.0 5e-30 MLILSKQENKKVFFIDAQKFYLKEGKYNRLTNIDRIYDEYLSKQDSDISRLVDYRDLDEG NFKASYYTQKKDICDSVLLGEFLECVYRGQRVESKKDEVLMDCYNVGIKDFEDYGFSEVF LEFSPKSDQKRIEKLRIQAYDILLSMRGVSPKLAIIGERIGDKRVLPNAGILVLRPKSRE IAKALYVYFLSKAGFLALSEIYQKNQDRIGEEEMLNFLLPKNFLEYQKRFERLIEEGNQV RWHQRAIKTLLDF >gi|197325096|gb|DS990370.1| GENE 60 63975 - 64799 659 274 aa, chain - ## HITS:1 COG:no KEGG:HH1091 NR:ns ## KEGG: HH1091 # Name: not_defined # Def: type I restriction enzyme (EC:2.1.1.72) # Organism: H.hepaticus # Pathway: not_defined # 2 274 8 292 563 154 32.0 5e-36 MLKELLQIFQYLQKFHKDNLDVLRIILEFLLISKDKKCLKGLIDGDKQQIDEDISAILKG YGLEAFSANPKINRKKILKALLDYEITPRDLENFIQIIVLHKTILGLYEYATPIEVNLLV CKLLDMKSNESIYNPCCGLGSLLFGMDERNFDYYGEDIHPKILYLAKILSIFMGFKRSYL AVADIFKESAFRSLEANKAFCYFPLESSLNLWDFRDNDLEPFVKSIPEIPFLAYTLRHFK QKGIFIVRSLLLQKAYGKRLRKFLKEKRLLEGVV >gi|197325096|gb|DS990370.1| GENE 61 64799 - 66043 1394 414 aa, chain - ## HITS:1 COG:YPO1285 KEGG:ns NR:ns ## COG: YPO1285 COG0814 # Protein_GI_number: 16121568 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Yersinia pestis # 7 414 11 414 414 367 49.0 1e-101 MFGIGKKPSVLGGTMIISGTAIGAGMLALPTISAGMWIWWSLGLMVVTWLMMLLSSQAIL EVNLNYNPGASFHTLVYDNLGKFWNLVNGLSVAFVLYILLYAYVSGGGSMVAHTSVALFG YEPPKLLSGLLFAILLSACVWWSTYAVDRFSVVMIGGMVITFIFAMSGMLGEIKTSLLLD LQNDGSSYGIFVFAAVSTYLTSFCFHASVPSLVKYFGKDSISINKCLVYGTLIALLAYVI WIVACDGNIMRSDFKEVIAAGGNVSHLIEAASSNLNGNFLLRMLDAFAFLAVATSFLGAG LGLFDYMADLCGFDDSRVGRTKTMLVTFAPPIIAGMVYPDGFLLAIGWAGLAATIWSVVI PALLLRASRKRVANQEINYRVKGGNFTIYTLLIFGCVVGICHILFVFNVLPMYQ >gi|197325096|gb|DS990370.1| GENE 62 66158 - 66304 136 48 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|253827886|ref|ZP_04870771.1| ## NR: gi|253827886|ref|ZP_04870771.1| hypothetical protein HCAN_1242 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1242 [Helicobacter canadensis MIT 98-5491] # 1 47 1 47 141 87 100.0 4e-16 MQKKFLFLISNLVLAASLAHALPPKEAPKAPKGITETLYRDSSFSQKS >gi|197325096|gb|DS990370.1| GENE 63 66685 - 66870 179 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|253827886|ref|ZP_04870771.1| ## NR: gi|253827886|ref|ZP_04870771.1| hypothetical protein HCAN_1242 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1242 [Helicobacter canadensis MIT 98-5491] # 9 61 89 141 141 73 100.0 4e-12 MLLLDLEEAKIQKDQTKIQNLYQSIAKKEAQIQQNKHEERNVRYNLESKMNAAINKILGI Q >gi|197325096|gb|DS990370.1| GENE 64 66903 - 67811 736 302 aa, chain + ## HITS:1 COG:all0783 KEGG:ns NR:ns ## COG: all0783 COG0685 # Protein_GI_number: 17228278 # Func_class: E Amino acid transport and metabolism # Function: 5,10-methylenetetrahydrofolate reductase # Organism: Nostoc sp. PCC 7120 # 42 301 46 296 309 119 30.0 8e-27 MNKIETFIETLRSHKKCFTYEFSSPASFSLEALFETIKKENLPAKIDAFVCTDSPLAKLK HNAILASLKLQNTFEIPSITTMSMRDRNTLALQSELIGMNSLDLRLILALTGDPIRHGNQ PQAKGIFEGNSNVLLKTICQLNTAKDINNNPIQGDFKPFYPFSVLNSYSNKKQNLYKKMQ EKIQNGALAIFTQPIYDLEIAEELLQWSNQINQECNTHCVLIFGFFPITSYKTALFLHNK LPGVFVPQGYLESMEKASQKGMEFEIGLQKSQELFNHLCKIHNKIHLMSANKADIIGKIL NG >gi|197325096|gb|DS990370.1| GENE 65 67804 - 68967 1121 387 aa, chain + ## HITS:1 COG:jhp1468 KEGG:ns NR:ns ## COG: jhp1468 COG0772 # Protein_GI_number: 15612533 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Helicobacter pylori J99 # 3 385 4 387 388 332 53.0 9e-91 MVDKPLFFLSISLITISIIFSYSLSSFAILYYDYNEFHFMLRQLIAGILGILLMWGISRC NPDNFVLKFGFILFFGGIFLMFIMHFLPESLATSAGGAKRWIRFPLFSLAPVEFFKIGFI AFLAWSFSRKFSLIETKTLKEEFITFLPYVFVFLIAVYLIAILQNDLGQIVLLGVTLALM MIFAGSSFKLFANLLALASVLFILVIITSAHRIMRIKAWWAGTQDLILSFFPQSIANSLR VENLPEPYQIQHSLNAIANGGIFGEGLGNGLIKLGFLSEVHTDVILAGITEEIGFIGLFV ISLIFLAMIYRILRIANRCKNTMYYLFCSGIGIVLGLSFLINAFGISGLIPIKGIAVPFL SYGGSSMLSTSIMIGLVLSIGKKAKIS >gi|197325096|gb|DS990370.1| GENE 66 69021 - 70277 1750 418 aa, chain + ## HITS:1 COG:HP0290 KEGG:ns NR:ns ## COG: HP0290 COG0019 # Protein_GI_number: 15644918 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Helicobacter pylori 26695 # 23 418 6 402 405 479 57.0 1e-135 MKNIPLPNTPTLEGNLDKKLLLQVAKEYQTPLFVYDFDKIEEYFNQFKLAFSGRKSLICY ALKANSNLSVIKKLASLESGVDCVSLGEIKRAILAGIPTYKIIYSGVGKQDYEIQEAIKL GILFINIESKEELLKVESIAKTLNTKARISIRVNPDIDPQTHPYISTGLKENKFGIGVEE AKSLYLYAHKSESLEPIGIHFHIGSQITKLQPIAESAQKIAQLLHSLLALKIDIKFFDIG GGLGITYKDETTINPYDYAQSILECLRGLDVTIICEPGRFIMGNSGVFLTQVLYEKISQE KRFVIVNGAMNDLIRPSLYNAYHKITPLNPREGELAPTDIVGPICESGDYLGKNIALPPL KAGDILAILSAGAYGFSMSSNYNTRPRCAEVAISQGKARLIRKRETFEDLIALEKDYL >gi|197325096|gb|DS990370.1| GENE 67 70287 - 71351 1085 354 aa, chain + ## HITS:1 COG:Cj0316_2 KEGG:ns NR:ns ## COG: Cj0316_2 COG0077 # Protein_GI_number: 15791684 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydratase # Organism: Campylobacter jejuni # 84 352 1 266 273 253 50.0 3e-67 MNLQLFRNEIDKIDDNILELLEKRMEIVKQIGKAKIQTNSPVYRPEREREIIDRLNHKKP TFLTRSAIESIYLEIFAVSRNLELPERVAYLGPVGSYTHQAAESRFGAICEYFSHNTITS AIKSVKEGRASYAVVPIENNQNGAVGETLDMLKETDLKIVAEIYMPIHHCFASISQKLQD IQIIYSKDIAFGQCHHFLSEHSLDHIQRIPVDSTAKATQLAAQNPQCAAICSHIAAKLYN VPILFENIEDSAGNKTRFIIISNFKNQRCGKDKTSIFANLTNTNKPGALYNLLYDIRDLN INMTSIQSRPAHTGDDFQYCFFIDIDGHIDDANINELFQRYPKELKWLGSYLKN >gi|197325096|gb|DS990370.1| GENE 68 71395 - 71871 659 158 aa, chain + ## HITS:1 COG:Cj1408 KEGG:ns NR:ns ## COG: Cj1408 COG1580 # Protein_GI_number: 15792726 # Func_class: N Cell motility # Function: Flagellar basal body-associated protein # Organism: Campylobacter jejuni # 59 158 58 159 178 90 45.0 8e-19 MADEEQKESKLASLKQNKMILFIIIGVVALLLIILIVVGILIFSGGDETQSQDANQPTQS SASKSSVANPNSSLLNVGPMYPLDQFIVNLVSTGGGKRYLKTAIALEMSIAEMQPELDTK VNILRDTIITILASKTFEEIQTTRGKQKLKEEIIARLN >gi|197325096|gb|DS990370.1| GENE 69 72363 - 72548 178 61 aa, chain + ## HITS:1 COG:HP1163 KEGG:ns NR:ns ## COG: HP1163 COG3197 # Protein_GI_number: 15645777 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein, possibly involved in nitrogen fixation # Organism: Helicobacter pylori 26695 # 1 59 5 63 63 62 49.0 2e-10 MVGVMLATSLIIGLLGLIAFLWGLKNGQFDDEKKMMQGVLFDNEEDLRRAANNKPTKKDK K >gi|197325096|gb|DS990370.1| GENE 70 72545 - 73501 1233 318 aa, chain + ## HITS:1 COG:HP1164 KEGG:ns NR:ns ## COG: HP1164 COG0492 # Protein_GI_number: 15645778 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Helicobacter pylori 26695 # 2 318 3 322 324 331 53.0 1e-90 MKEIYDIAIIGGGPGGIGSAVESVILGIKDVILFEKGENHSTTIRKFYKDNKRVDKDYKG QKVELNGNIYFCDGTKESTLDLFDEIIAENNFEAQFQTEVESITKEGEYFLIHTTQNTSV KAKFIIISIGKMGQPNKPSYSIPSTIRSVVNFNANSCKNGEKILVVGGGNSAVEYACILS ETNPVTLNYRRTEFARINDTNQENLNACLKAGKITPKLGIDIASLEDENGKPKVNFTDGT SETFDRIVYAIGGMAPIDFLKKCNLALDENGVPLIDENHQSSINKIYIAGDILYKNGGSI AAALNHGFHIVQEIKKRL >gi|197325096|gb|DS990370.1| GENE 71 73586 - 73774 310 62 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224418948|ref|ZP_03656954.1| 50S ribosomal protein L28 [Helicobacter canadensis MIT 98-5491] # 1 62 1 62 62 124 100 6e-27 MAKRCVFSGKGPMVGNNVSHANNKTKKRSLPNLRVVRIKLEDGTTAKVRIAASTLRTMKK RS >gi|197325096|gb|DS990370.1| GENE 72 73795 - 74925 1251 376 aa, chain + ## HITS:1 COG:jhp0442 KEGG:ns NR:ns ## COG: jhp0442 COG1226 # Protein_GI_number: 15611509 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Helicobacter pylori J99 # 1 376 5 376 378 425 57.0 1e-119 MAFTKLKKLLHWEGTQKPDVDLSGLLYEQLKPFRLPFILLFLGLLLSTLGYIVITDYTLI EAFFQSSYTFTTTGFGALKESEFDALSIIYTAIVMLAGSAVLSFCVIGVIDTLNRGKLIS VIKERSMIYKIARLKNHFIICHHNEYTIQLSKQFREAHIPFVVVDSHQSLEDIALKYRYP FFINEDPLEEIAMLKSHLSSARGVIALSNNIADNIAQIVSVRLYEKELGRKPYFIIANAN NSEEEEKLKKLGADCVVSPSKLFAQRVNAMATRPDMENLLERFAYQKDTPLDLEEIVVPR YSWLVLKKLKESHLREITQTSIVGITQKDGKFISMPNGDTLVTSECKLLVIGTSHGIRLT KQLVSKKDKPEELKYV >gi|197325096|gb|DS990370.1| GENE 73 74918 - 76108 1139 396 aa, chain + ## HITS:1 COG:lin1632 KEGG:ns NR:ns ## COG: lin1632 COG1364 # Protein_GI_number: 16800700 # Func_class: E Amino acid transport and metabolism # Function: N-acetylglutamate synthase (N-acetylornithine aminotransferase) # Organism: Listeria innocua # 7 396 4 398 398 263 39.0 6e-70 MFNLFPIENGVCAPIGFYCDGVSAGLKANSQLDIAFIYADSLCDVEGIFTENKFCAAPIT HFRQYGENFKTNFVLINSKNANALTGDEGVQNIQEILAKLQTTFPHITNPIMSSTGTIGV QLPKEKIMQSFSYFNLETKNNQNASQAIMTTDRFNKTIAFEVFLDDTRSFKIGAICKGAG MINPSLATMLCFITTDAAIPKEDIRPLLLKAAKTTFNAISVDGDTSTNDTILLLSNQKSG NYDKEAFLFALEKIMHKLATDIVRDGEGATKLVAFEVKGAKTEKEAEICAKALSQSPLVK TALFGCDPNWGRIASTIGASGIECNPNTLEIYFGDICVYSEGKIYFDSLNEEKAARVLKQ DSFKISCNIGLGKESFVAYGCDLGYEYVKINADYRT >gi|197325096|gb|DS990370.1| GENE 74 76177 - 76401 489 74 aa, chain + ## HITS:1 COG:no KEGG:CFF8240_0974 NR:ns ## KEGG: CFF8240_0974 # Name: not_defined # Def: hypothetical protein # Organism: C.fetus # Pathway: not_defined # 1 73 1 73 75 66 64.0 3e-10 MLHEYRDEITALKQENAHFAKIFDEHNELDQKIQDISEGREHATDVELSELKKKKLSLKD EALAMIMEYKENKK >gi|197325096|gb|DS990370.1| GENE 75 76405 - 76731 380 108 aa, chain - ## HITS:1 COG:DR2294 KEGG:ns NR:ns ## COG: DR2294 COG1324 # Protein_GI_number: 15807285 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in tolerance to divalent cations # Organism: Deinococcus radiodurans # 1 101 1 101 102 63 33.0 7e-11 MSLMLLQTTTTEENSQVLMKDALKSGLVSCIQKVPIESYYYWENTLKQDKEILLTFKVNQ SDFEKLRVLIEAKHIYEIPEIVGMPLDYISSKYQRWHNETIKTLKDKF >gi|197325096|gb|DS990370.1| GENE 76 76735 - 77016 306 93 aa, chain - ## HITS:1 COG:no KEGG:WS1042 NR:ns ## KEGG: WS1042 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 89 1 89 103 65 40.0 7e-10 MITILKVIISLIIAMIWYQLTSNQETAIFFFILMLIIFFIRPIAYQSPTERQEYLEKFRK AKERQVNIEQLRREEKKKAQEERNRKKSKETKE >gi|197325096|gb|DS990370.1| GENE 77 77016 - 77597 346 193 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418954|ref|ZP_03656960.1| ## NR: gi|224418954|ref|ZP_03656960.1| hypothetical protein HcanM9_06720 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1258 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1258 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 193 1 193 193 327 100.0 3e-88 MKECILLHKVFYSKSVFILIKDLKNLCQKVEIPLTETLKIRCENRLLTFVDELKCYGLLA EAKRKKSKPLIYDSQTMLGIWNFFKKYYEYLEFKEQLLKDFGIEVDILELEECFAFILEA ILQKIKGLNNKNRKESFKCVFLLDRELESENIFRCDDLEISILLIPQVFLVIFEECRVIN LLLDQHIITPKMF >gi|197325096|gb|DS990370.1| GENE 78 77745 - 78224 509 159 aa, chain - ## HITS:1 COG:no KEGG:WS1039 NR:ns ## KEGG: WS1039 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 3 159 2 156 156 156 53.0 2e-37 MNLDKILHDKKFVELNKSHCREILEYLIHKKINFSIVCNVSCVKFEPELPSEIKAAFSEL TVFILAGYTFESLELDENNLYFEAGFGEENLGSFVTTPLESIVQILLPNETDIRADFCVF INLLATYATPKSKDNFSDEGVNSSMKALLSNPKNHKFKR >gi|197325096|gb|DS990370.1| GENE 79 78247 - 79977 1908 576 aa, chain - ## HITS:1 COG:HP0470 KEGG:ns NR:ns ## COG: HP0470 COG1164 # Protein_GI_number: 15645098 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Helicobacter pylori 26695 # 8 576 6 573 578 572 54.0 1e-163 MCNSQDLWNLTPLFSSKESLEESLFSEINRAVKFEQQYKGQLATLDYHSFSQAIKGYEKI CENLSRVMTYAFLCFAANTKEGAFLAKCEMEVNKAQDKLLFFDLEFNALEESQKKDLICN VKEYSYYLELLAKNAKHQLTLPEEKILLKTQPVGVDSFKRLFDEHLSRLKFEFQGKQLSE EEILSFLYDKNQAMRKEAAKSLSVTLKENLELLAYIYNVVRKDLRITAELRGYKTLEESR HNDNQITQKSVDSMVKTINDSVGIVEEYYSLKAKLLGLEKLYDYDRYAPLLCSEDSEFPY EESKKIVLETFREFSPRFYEIAKKAFDEGWIDSHPRENKRGGAFSHSAVPSVHPYLMLNH TNKRRDAFTMAHELGHTIHQYLSYKVGYLNADTPLTTAETASVFAEMLLFDKMKEMLPKE EKIALYAGKLEDIFATLFRQNVFTNFERRVHQEEAELSVEEFSQIWQEENQKMFGKSVIL TEDYRLWWSYISHFIHTPFYCYAYSYGQLLVMALFGVYKKEGKSFVGKYEEFLSLGGSKS PRELVGIFGLDIEDDNFWKIGIKEVESLLKGLKAIL >gi|197325096|gb|DS990370.1| GENE 80 80102 - 81529 1968 475 aa, chain - ## HITS:1 COG:HP0658 KEGG:ns NR:ns ## COG: HP0658 COG0064 # Protein_GI_number: 15645282 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Helicobacter pylori 26695 # 1 474 1 474 475 692 72.0 0 MSAYETIIGLEVHVQLNTKTKIFCSCATSFGAEPNTNVCPTCLGLPGALPVLNKEVVKKA IAFGTAINAQINQNSVFARKNYFYPDLPKAYQISQFEIPIVGRGNIEIEVNGEKKIIGVT RAHMEEDAGKNIHEHDCSKVDLNRACTPLLEIVSEPDMRSSDEAIAYLKKLHSIVRFLDI SDANMQEGSFRCDANVSIRPKGDSKLYTRVEIKNLNSFKFIQKAIEYEVERQIEAWEDGK YQSEVVQETRLFDTAKGITRSMRGKEEAADYRYFPDPDLLPVYIDEVLMKEGREIPEMPD EKRERYVREFGIKPYDAGVLTSSLELTQYFESMLGFGASAKGSLTWLTTELLGRLKGENT LQTCGVDSRTLATLVCRIDESKISGKSGKEILDVLVEQKGGDVDSLIDSMGLAQVNDDSA ILSAIESVLSANADKVAEYKSGKDKLFGFFVGQVMKNSKGANPARVNELLKEKLQ >gi|197325096|gb|DS990370.1| GENE 81 81656 - 82909 1595 417 aa, chain - ## HITS:1 COG:PM1003 KEGG:ns NR:ns ## COG: PM1003 COG0677 # Protein_GI_number: 15602868 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetyl-D-mannosaminuronate dehydrogenase # Organism: Pasteurella multocida # 4 417 8 424 424 532 61.0 1e-151 MKTLAVIGLGYVGLPLAVEFGKKYKVIGFDIYQKRIDELKEGYDRTLEVGKEELQSAKGL SYTTNLEDLREAQIYIVTVPTPIDHYNKPDLTPLLKASSSVGKVLKKGDIVIYESTVYPG CTEEDCVPILERESGLKFNVDFFCGYSPERINPGDKEHRLPNIKKVTSGSTPQIAEEVNA LYASIIVAGTHKASSIKVAEAAKVIENSQRDINIAFVNELSLIFDKMGIDTLDVLEAAGT KWNFLPFRPGLVGGHCIGVDPYYLTHKAESLGYHSQVILAGRHINDNMGVVVANKVIKLM IKQAHQIVGSKVAILGITFKENCPDIRNSRVVDIIKELKDFDCCVEVFDPWADLAEVKHE YGLTLKEVKDFRMQDYAAVIVAVAHNEFKKLDFSNKGKTIVYDLKGILPKEQVNGRL >gi|197325096|gb|DS990370.1| GENE 82 83069 - 84775 215 568 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 366 558 147 340 398 87 34 6e-16 MFAKLNLILSQQDRIYIYFLLFISLIVSLIELIGISAIAPFISIASDLSLIENKPYYAYF YHLFKFDSTYHFVIFFGIALLLFYCFRSITNLIYQHLLARFTFGRYHLIVGRLFVNYLGM NYQDFLTKNTSYLTKTITTEAHNFTILLAAILFMTSEIFVVLLIYGTLLFVNFKITLGLT IMLGFFGLLMSKFVSQKIKKQGKQKEFYQKSFFESLASSFGNYKIIKLQSNNQTILDNFT QSSWGYSLANIKNQTFFHIPRLLLEAIGFCMMIAVVLYLFITDGKNMSAYLPLLSMYVLA LYRLLPSINRILDSYNKILFNYRSLEIIYQDIQMQTKKLGDEKIEFCEKIELKNICFGYT QDKKVLENVNLTLKKGSKTAFIGESGSGKSTLVDLIISLLEPNSGEIYIDQTKLCDKNLK SWRSKIGYIPQNVYLFDGNVADNVAFGREFNEEKMINCLKLANIYDFLTTKEGIHTQVGD SGIALSGGQKQRIAIARALYGDPEILVLDEATSALDNQTEQKIMEEIYQISQNKTLLIIA HRLSTIQKCDSIYQIKKGIPKKISYDDL >gi|197325096|gb|DS990370.1| GENE 83 84803 - 85732 793 309 aa, chain + ## HITS:1 COG:Cj1128c KEGG:ns NR:ns ## COG: Cj1128c COG0463 # Protein_GI_number: 15792453 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Campylobacter jejuni # 8 302 1 300 309 154 35.0 2e-37 MISKDIALPKVSVILTTFNREYFFTEAIESILEQDYPNLEIIISDDGSSDNTFAFACEYA QDHPNIKVVQNAHSKGSAGNRNNGLDYASGDLVLLLDDDDLLFKEAISQMVEVYLQFNKH YGIILANCTRSDDGFLSGKGINETREVSFKEVLCGKLEGEFITLFERKLLGTRRFNENLK RGNVGLLWLRMHKQSPCFYLHRPLKFYRIHAESLTHNMKYQPLEMVKNYEQDILLFYKER KEFCPKYLAELCAMAALLYKQGGDNKHAFKKILQSFLIYPNLKAIKALTYLCLPKSFIPR FNVRQRIEK >gi|197325096|gb|DS990370.1| GENE 84 85729 - 86847 680 372 aa, chain + ## HITS:1 COG:SMb21230 KEGG:ns NR:ns ## COG: SMb21230 COG0438 # Protein_GI_number: 16264482 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Sinorhizobium meliloti # 73 356 71 346 360 86 25.0 6e-17 MKKTKILLVIRSLFIGGAERQWVLLARGLAQKQEVDLLLCTLYSGGELVDEIKGIPHFCL HKKGKGDFLFLWRYRKLLKEFQPACIYAFMPDSNLFSLLASSFLKIPVIWGFRSSGIDIT RLSLFSKIYFYLQKFLSSKATAIICNSSDAISFYKNIGYHMEKAKIIYNGIDTTKFFPKP SNTLKSSLQIPEDAFIFGIAARMDKVKDYPLLAKGAREILAKNQKVFFIAIGKINVEILK ECETILGEFKKQFLFLGIQKDTQIFYSLFDCILSTSYTESFSNSIAEAMACECIPLVSDV GESKIIANFGQNYPYYFPKKDLESFCKGLNSILTLQKDSLQKLKKQAREHILQNFSAQKM VESTLKELKQCL >gi|197325096|gb|DS990370.1| GENE 85 86838 - 87980 921 380 aa, chain + ## HITS:1 COG:Cj1127c KEGG:ns NR:ns ## COG: Cj1127c COG0438 # Protein_GI_number: 15792452 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Campylobacter jejuni # 3 364 4 350 365 215 39.0 9e-56 MSLVILIYSLGPGGAERITSLLLEALSKEYPITLVLLEDICHYNIPSNVTKVILGKNSTH ESGLKKLIKIPILAYKYSKIIRNCTHSFSLMTRPNYINILASFFTKKPKIFISERSYPSK QYGYGNLQSKINRFLIQTLYKRADKISANSPQNLQDLISNFQIPKSKTTLLPNCFDLEKI QNLSQENTPLKEKILAKKLEGKKIFVSIGRLDEGKNHTLLINALAALKDKNIFLFILGEG VLRESLQTQINALNLANHIALLGATTNPYAPLSCADFFLFASNHEGFPNVLVESLALGIP VITTDCAPQMILQSTQKMQNFKLGKCGITTPLNNKEIMIEAINWALENPAFFKKENLLSQ AKTFSITHQLPLYKKWLELK >gi|197325096|gb|DS990370.1| GENE 86 88084 - 88440 543 118 aa, chain + ## HITS:1 COG:HP0034 KEGG:ns NR:ns ## COG: HP0034 COG0853 # Protein_GI_number: 15644667 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate 1-decarboxylase # Organism: Helicobacter pylori 26695 # 1 110 5 115 117 133 64.0 7e-32 MLYSKIHRARVSDANLNYVGSITIDIQLMKAAGLLEGQKVDIVNINNGERFSTYVIEGKN GDICLNGAAARKVQIGDKIIIMAYAQFSKEELENYEPKVVLVDESNQIIQIKKELKNV >gi|197325096|gb|DS990370.1| GENE 87 88433 - 88741 588 102 aa, chain + ## HITS:1 COG:Cj1642 KEGG:ns NR:ns ## COG: Cj1642 COG0718 # Protein_GI_number: 15792947 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 1 96 1 99 103 87 60.0 7e-18 MFNPEDLAKTLENLQENFKNAQEENKNLTFSAKSGGGLVSVSANGEGEIIDISIDDSLLE DKESLQILLMSAINDVFKSVEGNKKKMAMGMLGNLGNFPFKG >gi|197325096|gb|DS990370.1| GENE 88 88744 - 89826 1140 360 aa, chain + ## HITS:1 COG:no KEGG:WS1680 NR:ns ## KEGG: WS1680 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 17 352 16 338 341 234 39.0 3e-60 MKKILLLICSLILSVKLVAYDFSACQAKATLSMEKIGQSYGIAIKPLQKDAKLPTKSILF FYSPNAAPKGYKILKHDPFLGFYLLESKTNLSPISLKEINNEMLEDETASITPANNVSGK ISTRMQSPIDFATLNVPTFQNSLINTICEQSYGIGIGKNQFLEKKYLDRFINNPIYYGDI GIRVFQNPQDRVEVNLIDPFFNNNPFEYGDIIMMINGEAIPNVSQFNRVVLDLKEGSTIP VRIERNGIVQNLSVKVDKRRGGMLLKEDFFERVGIEISNDFTITQVLPSAKNGFEKLEVG DKVLRINQKDVPQNYDSIIRFLGDYVNDRQKWLISRDDFQFFIEVNTQKAKNDRETSFPF >gi|197325096|gb|DS990370.1| GENE 89 89798 - 90664 1072 288 aa, chain + ## HITS:1 COG:Cj1644 KEGG:ns NR:ns ## COG: Cj1644 COG0142 # Protein_GI_number: 15792949 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Campylobacter jejuni # 12 286 7 281 281 272 52.0 5e-73 MTEKLHSLFSEFESYLISQSPKVPSFHPYYEKALWEMVLSGGKRFRPKLLLSVVYANKAK FASKAFAPALALEILHTYSLIHDDLPAMDNALLRRGVPTLHHKYDECGAILVGDGLNTHS FYCIAKSKLKPKIKNKLIEILSYNGGIHGMVLGQALDCYFEKQTLPLEKLRTIHLNKTAK LIAAALQMGGIIAKCDKKFCQKLYKIGLDLGLFFQIRDDIIDATQSSQEAGKTTQNDSEK NSYVNLLGLETAKIEAKKLQESLQTQLQSLNPKTNQTLTILLEEYFTF >gi|197325096|gb|DS990370.1| GENE 90 90675 - 91457 747 260 aa, chain + ## HITS:1 COG:Cj0293 KEGG:ns NR:ns ## COG: Cj0293 COG0496 # Protein_GI_number: 15791661 # Func_class: R General function prediction only # Function: Predicted acid phosphatase # Organism: Campylobacter jejuni # 1 258 1 253 258 256 49.0 3e-68 MKRILIANDDGYQSPGLLALREALAPLGHIVIVAPASEKSACGHGMTLTRPLRFIKLDDD FYKLDDGTPTDCIYLSLHALYEEGFKPDLIVSGINIGSNMGEDVSYSGTASAAMEGVLHD IPSIAISQVLQDKNCFGFDFSLAKETIYNLAKKILENGFPLQKREFLNVNIPQISKEQCK GMKITELGIRLYGNDAHLHRNPRGEEYYWLGLHPLNWKERNQQESSDFNAIMNDYVSITP ITLDFTARKSMQPLQDWITQ >gi|197325096|gb|DS990370.1| GENE 91 91454 - 92146 665 230 aa, chain + ## HITS:1 COG:jhp0692 KEGG:ns NR:ns ## COG: jhp0692 COG1179 # Protein_GI_number: 15611759 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 # Organism: Helicobacter pylori J99 # 5 225 7 221 235 234 55.0 8e-62 MTNKRFTRTLLLFKEDGFAKLQNASVLILGVGGVGGFALDCLYRTGIGRICIIDYDSFDE TNQNRQIGSFEGVGEKKVKILAQKYQGIEAIETKITQEFLQNFDFTPFDIVIDAIDDIEA KISLALTLANHPKNPNIPLLLSSTGSAKKLDPSKIQSASIWKTYGDKFARKFREGLKKQG FKGNFLAVFSPEPPNCKELGSFSGVTGSFGLRLASEAISIILKKEIVCKS >gi|197325096|gb|DS990370.1| GENE 92 92134 - 92295 306 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQILAKSYEDECEDFEEEEYDGYDSKYEDSDKYNYDEDDYDNSDSDYENDEDY >gi|197325096|gb|DS990370.1| GENE 93 92295 - 93176 974 293 aa, chain + ## HITS:1 COG:Cj0947c KEGG:ns NR:ns ## COG: Cj0947c COG0388 # Protein_GI_number: 15792276 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Campylobacter jejuni # 4 293 1 290 290 421 68.0 1e-117 MQNIKVALIQQAFKGTKTATLQTTAKMIKEAAKNGANLVLLQELHTTEYFCQSENVDFFD YALSFEEDCEYFSEIAKNHKIVLVTSLFERRTRGLYHNTAVVFESNGEIAGKYRKMHIPD DPGFYEKFYFTPGDLGFTPITTSLGKVGILICWDQWYPEAARSMALKGAEILIYPTAIGW FDSDSKEEKDRQREAWIAVQRGHSVANGIPVVAINRVGFEKDKSGVLEGIRFWGSSFAFG AQGELLTLGSVENEEILYFEWDKKRSEEVRRIWPFLRDRRIDSYQNILKRFDD >gi|197325096|gb|DS990370.1| GENE 94 93169 - 93729 657 186 aa, chain + ## HITS:1 COG:no KEGG:Saut_1046 NR:ns ## KEGG: Saut_1046 # Name: not_defined # Def: methyltransferase type 12 # Organism: S.autotrophica # Pathway: not_defined # 1 181 1 181 184 159 44.0 7e-38 MISDKEKWDLRHQNNPIPNSPLELLSQNIAQAQKGRALDIACGMGRNSKFMRDNGFIVDS VDISTYAISSLKDEVNINPICVDLDTFSIQKNHYDLICNSFFLERRLFPSILEGLRKNGI LIFETFARSDNESHNAFASDSSHLLRKNELLRAFLDLEILFYEEKLICRNQDSHSLALVA RLVARA >gi|197325096|gb|DS990370.1| GENE 95 93722 - 95062 1164 446 aa, chain + ## HITS:1 COG:jhp0696 KEGG:ns NR:ns ## COG: jhp0696 COG0534 # Protein_GI_number: 15611763 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Helicobacter pylori J99 # 34 443 4 412 417 264 37.0 3e-70 MPKFLHFYSNQRSKKILNIAIPSGLNSLLDIINLSIDLMFIGVFGANAIVAVGVSLNYMM LAFAFTTIIFVGNSALVSRFLGADQKKCADEVILSLTFAAFCLSIPLCLLAFLCYDYFFS WIGISNEAKEIGSSYLSLTLFGIPLLLIKQVSISSFSAAGATKIPFFIKIFITLFNPILK YIFIFGFLFIPEFGVIGAAIATLIINFIETLALFLYLLCYKKSPISLRGKINFDYIKRAF IVGIPSGCERLFTLLSMILMAKFVALYGTFNLAGYQIATRIEGFAFMPGFGFMIAAMALM GQNLGAHKPLEAKYSTLNTLLLGGVFMGVIGLIMTFFAPLLSSFFTHDIQTIEASTKYLI PIGISQIAFAFICILDGALRGAGITKITLITNTLMIWGLRVIPCYLIAKFHYPISYIYLC ICLETFLRAFVYWKIFQKGAWRKNKV >gi|197325096|gb|DS990370.1| GENE 96 95059 - 95277 216 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418973|ref|ZP_03656979.1| ## NR: gi|224418973|ref|ZP_03656979.1| hypothetical protein HcanM9_06815 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1277 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1277 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 72 1 72 72 75 100.0 1e-12 MNSVSGFGLILVLIVAVSFLIVIATIISVARSGDKLTSFEKKFLVFVAIALCLLVIVLYI ISNLPLFFAWIG >gi|197325096|gb|DS990370.1| GENE 97 95406 - 96734 1969 442 aa, chain + ## HITS:1 COG:jhp1373 KEGG:ns NR:ns ## COG: jhp1373 COG0172 # Protein_GI_number: 15612438 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Helicobacter pylori J99 # 13 441 1 415 415 498 61.0 1e-140 MSLDNYFLRLEFMIDLKLLVNDFEGVVAQLTKRNIDEVFLETLRQTHLNYKQKKIALEEL QAKQNSKTKLFAQYKQEGKDIQPLKKECDLLKAEITLYTQEIQGWEEKLQEFSHIIPNIP DSKTPIGKDEKDNVEIKKILTPREFSFTPKEHWELAEQNGWIDFERGVKLAKSRFSVFMG MAAKLERALINYMLDFNTQRGFSEVGTPVIVNSQILFGTGQLPKFENDLFKISDFEEEEL DSKEAKKGHELYLIPTAEVTLTNLYNNEILKEEDLPLMMTAYTPCFRKEAGSAGRDTRGI IRQHQFDKVELVAITTPQDSDIMQERMVACASDLLTSLGLPHRLVQLCSGDLGFSASNTI DIEVWLPGQNCYREISSISNTRDFQARRAKIRYKDSNKKNLLVHTLNGSSLAVGRTLVAI MENYQNEDGSIEIPNVLQPYLR >gi|197325096|gb|DS990370.1| GENE 98 96739 - 99117 2024 792 aa, chain + ## HITS:1 COG:Cj0390 KEGG:ns NR:ns ## COG: Cj0390 COG0457 # Protein_GI_number: 15791757 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Campylobacter jejuni # 24 780 59 818 820 360 34.0 5e-99 MIEQEENKQVIHLDDGLDILQDILTKQEEPKPQTKLDKLQEFFKKRKKIAIPLGLLLGIF IIALIFIIGHFLSQETELPKQTPQIPPPQLTIQKGGDIIPDAENLDALLKKANFLYSSGN KQEALDLYGKISNYSEGLSNYNLGVVQMAEKSYANAMESFQKAIDLGEDRVISSLNAAVC ALYLNQPLKYQYYLNLAETYLPYAGNLPLYSYLYALTHYYQGNYFEAFSPLLHPSFSYYQ EQNNLLLSSLYAYFNNNYKALQTLNKDSTNPNHWFNLALLYARIGEYKQADSLIQQTINT FGNSLQREMALLLIKLQLNDYAQASKILNKYANNKEAINNNPYPIKITLKQDFFNINTAQ KRFWDNFSGFKLNSYKILFYFAPYKVFDAQEAFNIIQEGGINIHIENLQEAKEILLRGQT ISKVNRNIANAILETLQGNIRKANDLLANATENYPNHSILHYNLGLNYAQMGDFDRSYQH FIRAFHLNPKDLLAGIFALITSQLTHRDSTRLNNEISQEFANLQSTQEEREFIQALLNFA RNGTPMPLESLENKKSNIAIYYALNFVQNIALQDQSLLVQSTNGLKALLPNDPLSNLLNL LAINYKDDPKNLALKLQGYYQDPAINKDPIYYGAAVVREMYIEIAYIIGTLHYVEQDLDN RLITEQKDVRGIIQALALSYIYLQEFEKSFTLYNSLIDDFKEQDTQTLFLTAVAAIGAGH TENAATLLQLSKLEAPTNFETRIANGLLYLQENNYNAAASQFTTLVNSGAVSEFFDFKID VEKLQNRTKTSN >gi|197325096|gb|DS990370.1| GENE 99 99180 - 100631 1856 483 aa, chain - ## HITS:1 COG:Cj1058c_3 KEGG:ns NR:ns ## COG: Cj1058c_3 COG0516 # Protein_GI_number: 15792385 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Campylobacter jejuni # 201 483 1 284 285 402 74.0 1e-112 MKIRARALTFEDVLLVPAYSEILPKEVSLETKFSKNITLNSPLVSAAMDTVTEYRTAIAM ARVGGIGIIHKNMDINSQVAQIKKVKKSESGVIIDPIFISPDATLMQAKAITDNYKISGV PVVDDNGSLIGILTNRDMRFETDLSRPVKEIMTKAPLVTAKVGTSLEEARNIMNKHKIEK LPIVNEKGILKGLITIKDIQKRIEYPNSNKDDFGRLRVGAAIGVFQYDRAKALVEAGVDV LVLDSAHGHSRGILETVKEIKKHLVVDIVAGNVATKEGAQALIEAGADGVKVGIGPGSIC TTRIVAGVGVPQITAIADVSEVCHKMGIPLIADGGIKYSGDIAKALAAGASSVMIGSMLA GTEESPGETIIYQGRQYKSYRGMGSLGAMNKGSADRYFQEGTAQEKLVPEGIEGRVPYRG RIADVIHQMLGGLRSSMGYLGAKDVATLWEKAEFVEITQSGLRESHVHDVMITKEAPNYH ISN >gi|197325096|gb|DS990370.1| GENE 100 100628 - 101983 294 451 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 48 430 75 438 468 117 27 4e-25 MYIPTLQEALKLDKDGIRELKANLTQAIKQSNLNAYVGDLQDYNEECLPIAIKDNINVKG WEITCASKILQGYIAPYNATAIENLLQHKMAPFGRTNMDEFAMGSTTASSCYGKTLNPKN PSKVPGGSSGGSAAAVAGGIAIAALGSDTGGSIRQPASFCGCVGLKPTYGRVSRYGLVAY SSSLDQIGPITQNITDCAILFDAISGYDKMDSTSANLPFTNTYNNLNANRKMRIAILPSL LKDADKNIQDAYQKSIDLLSANGHTIVEKEMLDTSYIIAAYYVICTAEASSNLARFDGVR YGNRAENINNLKELYLKTRSQGFGDEVKRRILLGSFVLSSGYYDAYYIKAQKVRTLIARQ YNEILKDCDAILSPVAPRTAFGFDECKTPLQMYLEDIYTIGVNLAGLPALSLPVGESEGM PIGMQLIGAAFEEQKLLDLGLNLENLIKESL >gi|197325096|gb|DS990370.1| GENE 101 102259 - 104193 1880 644 aa, chain - ## HITS:1 COG:PA3790 KEGG:ns NR:ns ## COG: PA3790 COG1629 # Protein_GI_number: 15598985 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Pseudomonas aeruginosa # 52 644 96 723 723 313 34.0 6e-85 MKYKVFAFLSLSTLLYSQGNQVTIQYTNSPLTDPTQIDYTDILGKDSLLNNSDIAKSLQQ IPGFSVAKKGGGGTEAFFRSLGGGRLPIVVNGGTLLGGCGGRMDTTLTYIFPQNYNSIVI IKGPQDVRYGSLITGGMLFDREILTLQKPSFSGGVDALYGSFGRVDANTHLIGGNELGSL QAIYSNYRSDDYKSGRGDRVHSAYKRQSGSFIGALTPSPDLKLELSFDIGRGEAAYADRT MDARTFDRESYQAHLIKFFNDDKLDFHIYHHEIDHIMDNFSLTNGIPKTGNKYQISNPNR TNTGGRLEYQKKFDLSKIYFGGNYNLDKHKTRSIANQNSAQEAEMILNSPYAPNYTFKSY GIFSQIETFTLSNMGYFAGIRGDRVDMMAHKLDTSNTKYALSGFGRAEKYFGDYTLYAGL GYAQRIPDFWEVSKGNGLNLKKEKNTQLDLGATYHKEKLSFSVSSYVSYIQDYIMLNYNT ATTASFNTDALLLGGEAEISYEFLPNTFALAQMSYTYGQDTKENRPLAQIAPLQTLFALK YDDNKYFIKGEIIAHAKQTRSLEGYGNVVGQDFGDSSGFGIINFYVGYTYNNLKLFAGVE NLTDKLYSYHLSKNSIDLSVADNPVSSRIYEMGRNFWVRAKIDF >gi|197325096|gb|DS990370.1| GENE 102 104536 - 105405 969 289 aa, chain + ## HITS:1 COG:Cj0263 KEGG:ns NR:ns ## COG: Cj0263 COG0428 # Protein_GI_number: 15791634 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted divalent heavy-metal cations transporter # Organism: Campylobacter jejuni # 1 287 1 289 291 345 68.0 7e-95 MEILSWQVFYAIMLTFFAGASSAIGALIAFFSYTNNTRFLSFGLGFSAGVMIYIAFVEIL PSSLLDFKTYSKDFGEIIGLLCFFGGLLISLLIDKLIPKELNPHNPKNDDELLELKICPI PSGKQKPSYHPGISQRETLKLKHTGILTAIAIGIHNFPEGFAVFASSLDNLSFGIIIALA IAIHNIPEGMAVSLPIYHATGNKKKAFYYSAISGLAEPLGAIIGALFLLPFMGDLTLAIT FAFVAGIMVFISLDELLPASKNYGEAHDSLYGLILGMAVIALSLLILHR >gi|197325096|gb|DS990370.1| GENE 103 105402 - 106004 600 200 aa, chain - ## HITS:1 COG:BH0577 KEGG:ns NR:ns ## COG: BH0577 COG3467 # Protein_GI_number: 15613140 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein # Organism: Bacillus halodurans # 1 124 4 125 184 60 28.0 2e-09 MRRSEFECFDSQILQTMLAKIEFGVMVIPDDEPYGVPISFCYEEGEIYFHGAKSGRKYHL LKENPKVSFSATKVYSYIPSYFLNNTMIPTQFFFSVYLSGIFETITDHQRKKHILKALVQ KYEPYNDSLNMDLGQFKGQERGVFVGIIKVESQSIKAKFGQNLKQEAREQIIKDLTNRGT LLDQETIEMMRYFSSSLKVC >gi|197325096|gb|DS990370.1| GENE 104 106016 - 106996 1384 326 aa, chain - ## HITS:1 COG:jhp0207_1 KEGG:ns NR:ns ## COG: jhp0207_1 COG0822 # Protein_GI_number: 15611277 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Helicobacter pylori J99 # 1 159 1 160 160 264 81.0 2e-70 MAKNELLGGALWDAYSKKVSERMDNPTHLGVITQKEADERGLKLIVADYGAEACGDAVRL YWLVDANDVIVDAKFKSFGCGTAIASSDMMVELCLGKKVQEAVKITNIDVEKALRDDPDT PAVPGQKMHCSVMAYDVIKKAAALYLGKNPEDFEDEIIVCECARVSLGTLKEVIKLNDLK SVEEITEYTKAGAFCKSCIKPGGHEEREYYLVDILRDVRAEMEEEALKNKADLESKGDLK FADMTLVQKIKAIESLIDEKIRPMLMMDGGNMEIIELKNSSDGYTDVYIRYLGACSGCAS GATGTLFAIESVLQEGLDSSIRVFPV >gi|197325096|gb|DS990370.1| GENE 105 107008 - 108180 1351 390 aa, chain - ## HITS:1 COG:jhp0206 KEGG:ns NR:ns ## COG: jhp0206 COG1104 # Protein_GI_number: 15611276 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Helicobacter pylori J99 # 6 390 3 387 387 606 75.0 1e-173 MNQSSKRVYLDNNATTMLDPKAKELMDPYFCEKYGNPNSLHIFGTETHKAIREAFNHLYE GINARDEDDIIITSCATESNNWVLKGVYFDVLRFGEKNHIITTDVEHPAVLATCRFLETL GVEVTYLSIGENGTLKAKQVEEAITDKTALVSVMWANNETGIIFPIQEIGEICKKRGILF HTDAVQAIGKIPVDVQKANVDFLSFSAHKFHGPKGIGGLYIKKGVKLTPLFHGGEHMGGR RSGTLNVPYIVAMGEAMRQACLYLDFERNNVRRLRDKLEDALLEIPDVFVVGDRALRVPN TILVSIRGVEGEAMLWDLNKNGIACSTGSACASEDLEANPVMSAIGADKELAHTAVRISL SRFTTQEEIDYAITIFKKSIERLRAISSSY >gi|197325096|gb|DS990370.1| GENE 106 108437 - 109177 735 246 aa, chain - ## HITS:1 COG:Cj0813 KEGG:ns NR:ns ## COG: Cj0813 COG1212 # Protein_GI_number: 15792151 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: CMP-2-keto-3-deoxyoctulosonic acid synthetase # Organism: Campylobacter jejuni # 1 244 1 236 239 242 54.0 5e-64 MIIIPARLKSTRFPNKILVSVGGIPMVIRVAKIAKEVDEVVIACDDVSVQEVCEQYGFKS ILTSKEHESGTDRIAECARILGLGQDEIIINLQGDEPFIEKEVIQKLKSLMESKAQERGE IPFMGSCMRVISKEEAEDPNLVKVVLNKDKEAIYFSRSRIPYDRENILDSHDKWRYFGHL GIYAFSGKSLQEFCDLPKSSLEEIEKLEQLRAIENKKTIVMAEVNSRSFGIDTKEDLKRA LEIFSL >gi|197325096|gb|DS990370.1| GENE 107 109181 - 109435 344 84 aa, chain - ## HITS:1 COG:Cj1164c KEGG:ns NR:ns ## COG: Cj1164c COG3809 # Protein_GI_number: 15792488 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 1 84 1 87 87 107 67.0 5e-24 MQCPVCSGVDLVMSERSGVEIDYCPKCRGVWLDRGELDKIIERSTQNAQSPKYEERRQYE DTRYRESYQKPKKRESFLGELFDF >gi|197325096|gb|DS990370.1| GENE 108 109536 - 109928 412 130 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253827933|ref|ZP_04870818.1| ## NR: gi|253827933|ref|ZP_04870818.1| hypothetical protein HCAN_1289 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1289 [Helicobacter canadensis MIT 98-5491] # 1 130 1 130 130 219 100.0 4e-56 MQQEFLFLVLMGAVIGILFLGLLVAFLSRKPKASNAIEKIPSAQEILEVLKQKDKSLEDL KKCVKLAKIHYSTYMEEILDFDVQFVLLLATHKAVNAKLLLEIELYFKNANPSRKEIVDK ALGVGVANRK >gi|197325096|gb|DS990370.1| GENE 109 110056 - 111261 1717 401 aa, chain + ## HITS:1 COG:jhp0570 KEGG:ns NR:ns ## COG: jhp0570 COG2171 # Protein_GI_number: 15611637 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Helicobacter pylori J99 # 4 401 3 401 401 548 66.0 1e-156 MNTNEFKQKVSEIQAKSEYKAPLGFGICYADVGVMSNKVLQATYPVLNWQENFGSYAIFW DLREECEILEDCESELVFGITEEFVIKALEAFSPYLAETQSNPNAHKNVAVVLELQRALQ EDRIYTENGDFRYRFCALYEDKQCKSVESAYMKLLALSLGKAPLRSLYLDGIFGLLSNVA WSGNVPFELDWLRENEIALKMRGEFPAIDFVDKFPRYLMQVIPQYDNIRLLDTAKTRFGA YLGTGGYTQMPGASYVNFNAGAMGACMNEGRISSSVIVGEGSDVGGGASILGVLSGGNSD PISIGKNCLLGVNSSTGISLGDGCIVDGGIAILAGTIFQITPQEAQKIKEINPDFEIKDN GLYKGRELSGKNGIHFRCDSKSGVMIAFRSNRKIELNSALH >gi|197325096|gb|DS990370.1| GENE 110 111299 - 111982 459 227 aa, chain - ## HITS:1 COG:CAC1699 KEGG:ns NR:ns ## COG: CAC1699 COG1496 # Protein_GI_number: 15894976 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 43 219 51 233 237 108 37.0 1e-23 MIIPSGLDLWLSEGGRNIAFHAGNLTKEAVKQNQSIELQSRGYSVEQLCFLNQVHGSDIL KASKSGLLGDGDGIILDKTGLVGLIMVADCNPIVIYDKVKRVLVLLHAGRLGVEKGIVFG AFSLLQREYQSRLDDLFVYIGPSIRGCCYEVGVEVLSEALESGKIAKEGKIYLDLIEVLK GQFREIGICNYEINPLCTCCSGRYFSYRRDKNCGRFGIFASLTDKFN >gi|197325096|gb|DS990370.1| GENE 111 111969 - 112994 1163 341 aa, chain - ## HITS:1 COG:PA4481 KEGG:ns NR:ns ## COG: PA4481 COG1077 # Protein_GI_number: 15599677 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Pseudomonas aeruginosa # 7 327 11 337 345 209 33.0 6e-54 MAFLERNDIAIDLGTVNTIVRNNAEDIIFCEATCITLEDMGDSKRVVCIGDQAKKMMGRA PSNFEVINPLLNGAISDFETTKTFISALISLGQTWKLAPRVGISIPRNLTQVERHSLYEA AILAGAKEAFLIEDPFSASVGAGLDISTARAKMVIDAGGGLIEASVISLGGLIASAFTKE AGDFIDYALMEYCRYNKNIGISKELAEKIKRQIKVFGENPIINIGAKSLSNGMPISYELN LNDLKHVLLAGMFKVKNTILEAIQKSPPQIAPDLIEDGAILTGGMALIEGMREFLEEELK MKIILSPNPLLDISKGACMIMQNYDAYDRVEWGGGNLIDNS >gi|197325096|gb|DS990370.1| GENE 112 113116 - 114330 1279 404 aa, chain + ## HITS:1 COG:HP0382 KEGG:ns NR:ns ## COG: HP0382 COG0501 # Protein_GI_number: 15645010 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Helicobacter pylori 26695 # 1 396 8 405 407 320 44.0 3e-87 MSFILFYGLLLTLPKMILSLIQLKFLKTQRNKKPYILDSQSFKKAADYSIIKEKISFLNT FVDFCLLGIWILFGLQMLESFLPTDSPLGSTLFVLLFLFIQSLFSLPFDAYKTLVIDKKF GFAKGGIKLFLADTIKSFLLLLVLGGILTFIFAWIIANIPSWEFYTFIIGALFIIATNLL YPTLIAPLFNKFTPLEDKDLKNAIQNLLTRVGFYSNGVFVMDASRRDGRLNAYFGGIGKT KRVILFDTLLEKIPKDSILAVLGHELGHFKHNDIYKMMGLVLSFFFILLLLIANLPQSLF AEASLTQSPHSIIVFLILLSAPIGFYFTPILGYFSRKNEYNADQFGAKLTSNEALANALL LLVKENNSFPLSHELYMRFYYTHPPLMARLIALKCEHLAFEGDK >gi|197325096|gb|DS990370.1| GENE 113 114327 - 115163 212 278 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|160872888|ref|ZP_02063020.1| protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific [Rickettsiella grylli] # 55 270 82 299 314 86 29 1e-15 MTLKEAIDFGAYTLKNSQIQRPRLESEILLSHTLNQPRIYLHSHSTEELSLFHEMLFMDL IQRRKNLEPIEYIINKVSFYGKEFYVDRGVLIPRPETEILVDKARNIITQNNCKNIAEIG IGSGIISIMLALLLPNSNLNFYASDIIPEALFNTHVNLEKFKISNVKLYKSAFLDFNKKE NITFDLLISNPPYIKKGEILPTPLSFEPQKALFGGERGDEILHQIIKLAYENKIPHLICE MGYNQRESIENLMQNIPHQKLEFYQDLANLERGFIIDF >gi|197325096|gb|DS990370.1| GENE 114 115180 - 115935 1009 251 aa, chain - ## HITS:1 COG:no KEGG:WS0087 NR:ns ## KEGG: WS0087 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 9 250 2 258 259 107 32.0 6e-22 MKNIEESKKEELELDDLLISGSEDEEVRETKSKKMILLVAIGVVLFAIIILVVYLLQDDT KQTTPTNTTINKPLEEAKLPEVSQKETNTDFGQVPIQSQNSSDSDEQFQRIIEQIKAQQK EQSLPNPPKEQVAPTKEVVASSKPEPEVKRVDNNAVTPSAPSTPNVAAQFNQSSNEIAKG FYIQVGSFSKVSPNKELLGTIKDLNFEYSMQKSGEVNRLLIGPFKTKLDAQKQLSLVKEK LNKDAFIKEIK >gi|197325096|gb|DS990370.1| GENE 115 115946 - 116491 728 181 aa, chain - ## HITS:1 COG:no KEGG:WS0086 NR:ns ## KEGG: WS0086 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 181 1 181 181 282 71.0 5e-75 MLTDMDLKLIKMITTHYWIKEPGIGQKIHHNGRIFYDKFKRVDEPLTRTILQSHFKKEIT VAHSLVNSQEKVENIVFDYNGFNAERFWHRAQLLLREEGFINFTAYETKTPGHLHLYIHK GHTTFQEACQLGKMLSAKLAQKMPTEWKMFPSLDIPKSFNILAVPYGVYNKERGASWSKH M >gi|197325096|gb|DS990370.1| GENE 116 116511 - 116981 516 156 aa, chain - ## HITS:1 COG:Cj0402 KEGG:ns NR:ns ## COG: Cj0402 COG0112 # Protein_GI_number: 15791769 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Campylobacter jejuni # 1 156 259 414 414 230 69.0 9e-61 MHVIAGKAVGFGENLKPEWKTYAKQVKANAKILASVLQKRNYKIVSDGTDNHLILLSLLD KDFSGKDADLALGNAGITVNKNTVPGEIRSPFVTSGVRIGSPALTARGFKEAEFEIVANR IADVLDDIQNTQKQAQIKEELKELALKFPVYNKAIF >gi|197325096|gb|DS990370.1| GENE 117 117113 - 117847 1032 244 aa, chain - ## HITS:1 COG:jhp0171 KEGG:ns NR:ns ## COG: jhp0171 COG0112 # Protein_GI_number: 15611241 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Helicobacter pylori J99 # 1 241 1 241 416 382 75.0 1e-106 MSYVLENSDQEIFGFIQEELNRQNTHLEMIASENFTFPSVMEAMGSVLTNKYAEGYPYKR YYGGCEFVDKIEELAINRAKKLFGCEFANVQPHAGSQANGAVYAALLKPYDKILGMDLSH GGHLTHGSKVSVTGQMYQSFFYGVELDGYINYDKVQEIAQITKPNMIVCGFSAYSRELDF KRFREIADSVGAILLADIAHVAGLVVAGEYPNPFPYADIVTTTTHKTLRGPRGGMILTNN ELAS >gi|197325096|gb|DS990370.1| GENE 118 117849 - 119342 1631 497 aa, chain - ## HITS:1 COG:HP0182 KEGG:ns NR:ns ## COG: HP0182 COG1190 # Protein_GI_number: 15644811 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Helicobacter pylori 26695 # 1 497 1 494 501 677 68.0 0 MFEDDIYIQGRIQKANALRELGINPYSNGVPKEMDCKTFLETFDVLKTLESEEKKDRSKN AQVAGRIKFIRLMGKAAFIKIEDNSGILQIYLSKNELGEGFDLFKKYIEVGDIIMAKGFP FVTKTGELSLHALEFQILTKAISPLPEKYHGLVDIEMRYRQRYLDLIMNREVRDTFVLRS KIISYVRKFFEENGFLEVETPMMHPIPGGANAKPFVTFHNALNVERYLRIAPELYLKRLV VGGFEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYKDYKDLIRLTKALFDYLFKVLKLP KTLQFNEKEIDFSEFREITYVDSLVEIGGIPRDVAINEDRLYEYLVSHNVKLESKMELGK LQSEAFDAFVEDKLINPTFITDFPIAISPLARRNDHNPEIADRFELFIGGSEIANGFSEL NDPLDQYERFKAQVAAKEAGDEEAQYMDEDYITALSYGMPPTAGEGIGIDRLVMLLTGHN IIKDVILFPALKPQKKD >gi|197325096|gb|DS990370.1| GENE 119 119385 - 119948 441 187 aa, chain - ## HITS:1 COG:Cj0399 KEGG:ns NR:ns ## COG: Cj0399 COG1286 # Protein_GI_number: 15791766 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for colicin V production # Organism: Campylobacter jejuni # 3 174 2 173 187 121 38.0 6e-28 MNSFSYFDLIIGLLIVLVGLKGIVNGFIREVFGLIGIVGGVFIASVYATEAGGWISRHIY TFENPSAISLIGFLVLLALVWILSLVIAEILQKVTRISALNSMNRILGFCFGAFKTFMIF SIIFYAISNVQVAKRFMQKYTDNSFLYPLLLDSGEVIIKLDLPQEEVQEAQEELSKRNEQ LQENREI >gi|197325096|gb|DS990370.1| GENE 120 120064 - 120567 781 167 aa, chain + ## HITS:1 COG:Cj0374 KEGG:ns NR:ns ## COG: Cj0374 COG1666 # Protein_GI_number: 15791741 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 3 166 2 162 163 103 46.0 1e-22 MASKEHSFDLSAKVDIQEFKNALEQAKKEIANRFDFKDDKVKDLDFNEKEKSLTILAASE NKAKTIKDILDSKLIKRNLSLKVLKEVSKDNASGGNLKITYKLNDALDDKNIKAINAEIK NQKFKVQTQIQGNEIRIKSKDIDELQKVIAHLKKMELEISLSFGNFT >gi|197325096|gb|DS990370.1| GENE 121 120723 - 121829 873 368 aa, chain + ## HITS:1 COG:jhp0168 KEGG:ns NR:ns ## COG: jhp0168 COG0815 # Protein_GI_number: 15611238 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Apolipoprotein N-acyltransferase # Organism: Helicobacter pylori J99 # 2 368 53 413 425 245 42.0 8e-65 MLLHFSRLSAFICGSSIGILWFYWIGLSFRFYNLTYLIPLVWIFVALIFGIFFLALCYFK NPIYRISALLCASFIHPFGFNWFIPELTLTQSYFFSSKSILALLLISLIIFGFLIQKRFY KIGFFGLILGLFGIGLFSQTLYPTSKESPLKIKTISTNIPQNLRWDSNNLKQIIDENFRL IQQAKQENYDLIILPETAFPIALNAEDSLLRILQDLSQDLAILTGAIHKQGNSYYNSAYL FYEGKMQIFDKIILVPFGEKIPLPQFLVNLINQIFFKGGVDFTTNSNQKPNSTILQNQHF QIAICYEATRQEFYQDSPSFLIAISNNAWFKPSIEPTLQKLLMQYFSLNYGTTIYHSSNG SQDFILSP >gi|197325096|gb|DS990370.1| GENE 122 121803 - 121952 57 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|313142512|ref|ZP_07804705.1| ## NR: gi|313142512|ref|ZP_07804705.1| predicted protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 49 1 49 49 69 100.0 6e-11 MSKYNVVLLGGSNSMMKNGIKVGIYGFGIKLIKSRENMQGILRGENKVL >gi|197325096|gb|DS990370.1| GENE 123 121954 - 122664 769 236 aa, chain - ## HITS:1 COG:alr4370 KEGG:ns NR:ns ## COG: alr4370 COG0639 # Protein_GI_number: 17231862 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Nostoc sp. PCC 7120 # 15 236 10 226 251 100 31.0 3e-21 MDGDLNLDYSKPIYIIGDVHGCLETLCALIEKLPQKWDSQIIFTGDLIDRGAKSCEVVDL VMKYNYACVLGNHEELMLEYYHAIPSKGYNKIWINNGGYEAMESYQRNGGFEKIHEHLEW FLKLPRFLEIPLCDEKGQRLFVTHGFGLPYYKEKEKKAEMVTWSRLKSHNWEKEAKKNYG VFNVFGHDVRKVPMIMENFAAIDTGCVYVGDDSKSAVLSALEWPSKQIYQQDNCER >gi|197325096|gb|DS990370.1| GENE 124 122649 - 124121 1940 490 aa, chain - ## HITS:1 COG:HP1491 KEGG:ns NR:ns ## COG: HP1491 COG0306 # Protein_GI_number: 15646100 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Helicobacter pylori 26695 # 8 485 45 526 533 453 57.0 1e-127 MWNDDGITNSLLLGFAAIVGGYMALNIGANDVANNVGPAVGSKALSMFGAITIAAICEIS GALIAGGEVVDTVRSGIISMDAIGDSRNFATLMLAALLSGAIWLHFATAIGAPVSTTHSI VGGILGAGIAAGGFGVANWVELGNIAASWIISPLSGGIIAALLLYFIKNTITYQQDKKEA ARRIVPYLIAFMTWAFALYLINKGLKNIIKMDFVTALIMSFVLAIVVFFIVKITIANAVE NMENKKEEINKLFTIPLIFSAALLSFAHGANDVANAIGPLVAIYDALKEGFSLGNQANIP FWIMFLGGLGISIGLALFGPKLIRMVGSEITELDQIRAFCISMSAALTVLVASELGMPVS STHIAVGAVFGVGFLREYLKKRYKQMELKILESYKGNDSEQIRRFLERFRKASIKKKAAI LKSIDRKKAKRKEGIPEIKKKEQKQLKKVYQEELVKRSAINKIIAAWLITVPLSALFGAV SFFILRWMGI >gi|197325096|gb|DS990370.1| GENE 125 124440 - 125174 1151 244 aa, chain + ## HITS:1 COG:Cj0687c KEGG:ns NR:ns ## COG: Cj0687c COG2063 # Protein_GI_number: 15792036 # Func_class: N Cell motility # Function: Flagellar basal body L-ring protein # Organism: Campylobacter jejuni # 15 244 5 232 232 243 54.0 2e-64 MKKTTHFLKAIFPSLAFIYGFLFNGCATTDPQISFKPPAYVEELPPKEEEDNFGNPGSIF GRGDNLLFSDRRAMQLNDLVTVIINQTAQASSSANKNLNENSSGTFGGPSLSYAGSSSSI GSIVNGINNATGFGINLGNNTSTYAGTGTQNRQETFTTTIAARIIKVLQNGNYFIEGSRE VLINGEKQIIHLSGVVRPTDIARNNTIESQYIADAKIMYDTQGELKKSTEKGWGTKLIES VWPF >gi|197325096|gb|DS990370.1| GENE 126 125337 - 126797 940 486 aa, chain + ## HITS:1 COG:HP0098 KEGG:ns NR:ns ## COG: HP0098 COG0498 # Protein_GI_number: 15644728 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Helicobacter pylori 26695 # 6 486 3 482 486 443 49.0 1e-124 MQQQYFIGTRGGDCPSITFKDALLNPNAPYGGLYTLKNLPTFSKEEIQSFANLDYTSLAK NIFKALGLGIVDSILENALKLYKNFDDSKIPAPLEKINETLYIQKLYCGPTRAFKDMALQ PFGSIFSDFISNSSKEYLILTATSGDTGPATLQSFANKPHIKVVCIYPKGGTSDVQRLQM TTLEAKNLKVIGINGNFDDAQNMLKNLLKDENFKATLEQKNISLSAANSVNFGRIAFQIL YHIYSSLQVYNLTKKPVHIIVPSGNFGNALGAFYAKIMGFPIQKIWIASNSNNILTEFIQ TGIYDISHKSLQKTYSPAMDILKSSNVERILFALFGENRTRELMESLEKNKKYSLEKSEL QKIQQYFEATFCEDSYCLETLKKYATMGIIIDPHTACGIKAYEQIQSLDSSIPCILCSTA EWTKFAPTLTKALGMGDLSDEEALHTLAQKFSISIPKQILELFTKNEIHTQVVDKDLLPQ TILQWL >gi|197325096|gb|DS990370.1| GENE 127 126809 - 127105 491 98 aa, chain + ## HITS:1 COG:HP0960 KEGG:ns NR:ns ## COG: HP0960 COG0752 # Protein_GI_number: 15645576 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Helicobacter pylori 26695 # 1 96 1 96 303 181 86.0 2e-46 MLYFSELLLKLQQFWQEQGCLIIQPYDIPAGAGTFHPATLLRSLDSKPWSVAYVAPSRRP TDGRYGENPNRLGSYYQFQVLIKPNPDNIQELYLKSPS >gi|197325096|gb|DS990370.1| GENE 128 127296 - 127781 674 161 aa, chain + ## HITS:1 COG:jhp0894 KEGG:ns NR:ns ## COG: jhp0894 COG0752 # Protein_GI_number: 15611961 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Helicobacter pylori J99 # 1 156 135 294 298 207 68.0 8e-54 MEVTQFTYFQQVGGIPCEPVAVEITYGTERLAMYLQGVENIFDIAWNEHYTYADVHLEGE YEFSKYNFEVADTKMLFEFFAKMQEEGRRALEAGLPLPAYDCAMLASHLFNVLDARKAIS ATERQNYILKIRDLSKACAILYKEQEPMRMERLENAKKPKK >gi|197325096|gb|DS990370.1| GENE 129 127759 - 128505 810 248 aa, chain + ## HITS:1 COG:Cj0705 KEGG:ns NR:ns ## COG: Cj0705 COG0327 # Protein_GI_number: 15792054 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Campylobacter jejuni # 9 247 3 240 241 209 43.0 3e-54 MQKNLKNSISQILVDLDSLSPFSLQESWDNSGLILGSKEGSFKQIYVALEVTQDLLEQME ADSVLITHHPLIFSPLKQIISEYYPSSLLHLAIQKNIQLIAMHTNFDKTHFGKYVTKEIL GIKNFSQEEFLVQFQWDNDFHSLCTLIKEKFKLQTLKITQTTNPQCKNIGLITGSGGSFI GKLSHIDCFITGDIKYHDAMEGMQKNIHLIDCGHYELERYFGEILLPLLTNLGYKAIILD SKNPFSYI >gi|197325096|gb|DS990370.1| GENE 130 128532 - 129245 1032 237 aa, chain + ## HITS:1 COG:Cj0706 KEGG:ns NR:ns ## COG: Cj0706 COG1579 # Protein_GI_number: 15792055 # Func_class: R General function prediction only # Function: Zn-ribbon protein, possibly nucleic acid-binding # Organism: Campylobacter jejuni # 1 235 1 235 238 162 43.0 5e-40 MNKHLTQLIEIANLDKEIDSFEPRIKEANQELNQLLSEENALQTQVDEIKNTAKDISLSI QKNENHLEDLSLKLEEIAKKTKLIKTEKESKALSLEEELAKEQITFANEEIVRLNTLLET KNGNIKELQDKINTLQESQKEIEKKVETEIQKIKKEQQEVFDKKETLIKAMDQKIISFYE KIRKWAKNTSVVPITRQACGGCFIRINDKIYSDVIRSDDIITCPHCGRILYNQEENA >gi|197325096|gb|DS990370.1| GENE 131 129399 - 130478 653 359 aa, chain + ## HITS:1 COG:jhp0891 KEGG:ns NR:ns ## COG: jhp0891 COG1519 # Protein_GI_number: 15611958 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 3-deoxy-D-manno-octulosonic-acid transferase # Organism: Helicobacter pylori J99 # 3 327 50 362 393 236 45.0 5e-62 MQIHWFHACSYGEVKSLQGIITSLSYLLKPNEQILLTTTTQTGYTLAKQLFPNAITCFLP FETFIPFWTKNLKIKSLTLIEAELWLMPLFCAKNKKASTLLINARISSNSYNKYRKLTFF YRRLFTLVDNIFCQEKKDKQYLKTLGAKNIKVFGNLKLAEIPQITKHYQKPSQELWLIAS THEKNSQQEEVLILKEILKILPKNSPNNPRILFAPRHPERFKSLIKTLNALLKQNHCPNL SVASQNGIQVSINAPFGFIDTLGELNNLYSIASLVILGGSFLPNIGGHNPIEPAFFRTKL ISGPYIYNQKSLFKSLQNYSLTNLENLHKILAKSDLLPPSKITKKLDITKIINIIRNEK >gi|197325096|gb|DS990370.1| GENE 132 130475 - 131272 748 265 aa, chain + ## HITS:1 COG:jhp0890 KEGG:ns NR:ns ## COG: jhp0890 COG0564 # Protein_GI_number: 15611957 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Helicobacter pylori J99 # 25 262 2 240 242 242 59.0 7e-64 MKTKQTKNSPKKNQHIPTKIPNNAQKAYKLLSAQEGISHNEAKNLIDRGLVTIQGKKLKI ARALLSPNTHFKIQQLPPIKIIFQDENILALSKPAFLTSEEIVKLYPQWALLHRLDKETS GVLLLIKENSPFHLKAKEEFKKEQIFKQYVAIVEGIIDEEQEITEPLIIQKGHFAKVIVA KKNGIKAYTKITPIEIESKKTKLEILIKTGRTHQIRAHLAHIKHPIIGDTFYGGKPANRI LLHAQKIALLGYSFEDSPPKEFLFQ >gi|197325096|gb|DS990370.1| GENE 133 131340 - 132257 1258 305 aa, chain + ## HITS:1 COG:Cj0269c KEGG:ns NR:ns ## COG: Cj0269c COG0115 # Protein_GI_number: 15791640 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Campylobacter jejuni # 1 304 1 304 304 462 71.0 1e-130 MNEAKSIWMDGKLVPWKDAKIHVLTHTLHYGNAVFEGTRAYKTDKGMAIFKLKEHTKRLL NSAKIVAIDSPYTQEELEKAQIELIKDNNFTSNTYIRPLIYLGYGAMGVYHKNSPVQVAI AAWEWGAYLGDEGLEKGIRVKTSSLTRNSIKSLFGKAKAAGNYLNSQMAKFEAIECGYEE ALLLDDSGMIAEGSGECFFIVREGKLITPPNDSSLESITQDSVITLAKDLGLEVIRRNIT RDEVYIADEAFFTGTAAEITPIRELDSRIIGNGQRGEITYKLQNAFFDIVYGRNPKYSHW LTYIS >gi|197325096|gb|DS990370.1| GENE 134 132267 - 133349 1231 360 aa, chain + ## HITS:1 COG:HP0248 KEGG:ns NR:ns ## COG: HP0248 COG0330 # Protein_GI_number: 15644876 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Helicobacter pylori 26695 # 1 358 1 357 362 337 53.0 2e-92 MPIDLNEHLRQKNKNYKPQNDNNSGNGNNGNNRNKGFQNYPKMPSFNLPSGKKMATLYAL IILIALLFLLKPFTIINSGEVGVKITTGEFDPTPLQPGIHFFIPGIQKIIPVNTKVRIAE FTSSETQNFRNIDEGSIRDKAISVLDSRGLSVSVELAVQYRLDPLGVPQTIATWGQNWEE RIIIPVIREIVRNVVGSFPAEELPTKRNEIATLIDQRFRENINNLENRPVQLESIQLTEI VLPIAIKEQIERVQVARQEAERARYEVERAKQEAEKQAALAKGAADATIIQADAQAKANR IISQSLSNSLLQLRQIEVQGKFNEALQNNRDAKIFLTPGGSTPNIWLDSKDTQRSSSAGQ >gi|197325096|gb|DS990370.1| GENE 135 133350 - 134039 620 229 aa, chain + ## HITS:1 COG:AF1950 KEGG:ns NR:ns ## COG: AF1950 COG0139 # Protein_GI_number: 11499532 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosyl-AMP cyclohydrolase # Organism: Archaeoglobus fulgidus # 13 112 7 106 108 125 54.0 8e-29 MEILETIAWDKLQNGLIPAIAQDYQTNEVLMLAFMNKEALELSLQSGYAHYFSRTKNRLW KKGEQSGHTQEIIECYLDCDKDTLLLKVKQKGVACHTGNHTCFFNQITLDSIVQKSSKTI DTSNLYGAIDTLYHTLLERKNSDPNTSYTASLYHKGENTIAKKIVEEAAELGFAIKDKNA KEIIYETADLLYHSLVGLAYRDLSPDLVKQEIIRRFGLSGIEEKNSREK >gi|197325096|gb|DS990370.1| GENE 136 134039 - 134581 569 180 aa, chain + ## HITS:1 COG:no KEGG:WS0089 NR:ns ## KEGG: WS0089 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 5 157 4 156 177 72 31.0 6e-12 MQLTLESFLSLLTQFTQYFSLYDYLILSSIFLGILLFFLLSILLSSNTIVCFLMLFMSAI LFFASPFIYQYIMQTYLKKIELTLSHNSKLQYDDIYYIKGTIKNAGSLDLKGCVVTTNFI PKNSNQFQQIKYTIRPIFRHKETYKKPLKKQESFEFEALFEAPKSLIYSNYKLQTQADCY >gi|197325096|gb|DS990370.1| GENE 137 134582 - 135478 380 299 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163786851|ref|ZP_02181299.1| 50S ribosomal protein L32 [Flavobacteriales bacterium ALC-1] # 3 296 9 324 346 150 34 4e-35 MKIAISVGDINGIGLEILLKSHQKISKICTPLYCIDKPLLKKAARILDIKIPKNLICISP NAKIPEIIPATLTKESGAYSYASFLCALNLTQNKQAKALTTLPIHKKAWQLANIPYAGHT EAFRDLFKQDAIMILGSPKLYVALFTDHIPLKEVPNKITEESLTSFLLNLAPHITKTPCG VLGLNPHAGDLGVLGNEENAIKQAIHCVNEQLGKEIFIGPLVPDTAFIGKHLKYYVAMYH DQGLIPLKTLYFKESINFTLNLPIIRTSVDHGTAFDIAYHNKANLKSYFNAIKEAIFRS >gi|197325096|gb|DS990370.1| GENE 138 135718 - 136920 1814 400 aa, chain - ## HITS:1 COG:CAC3158 KEGG:ns NR:ns ## COG: CAC3158 COG0133 # Protein_GI_number: 15896406 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase beta chain # Organism: Clostridium acetobutylicum # 13 394 2 385 394 426 55.0 1e-119 MQAPYLKQFPDENGFFGKFGGSFVPEPIAKAMEEINQAYNLIAQNSDFIAELRKIRKHFQ GRPTPIYFAHNLTKEYGGAGIYLKREDLNHTGAHKLNHCMGEALLAKFMGKKKLIAETGA GQHGVALATAAAYFGLECEIHMGEMDIAKEHPNVVRMKILGAKVVSVSRGAKTLKEAVDS AFEAYLSDPKNTMYAIGSVVGPHPFPKMVRDFQAIVGIESKEQFLEMTGELPDIVCACVG GGSNAMGIFSGFIDDAIDLVGVEPLGRGSALGEHAASLSYGSEGVMHGFNSIMLKDSHGE PAPVYSVASGLDYPSVGPEHAYLHSIGRTKIAAISDKEAISAFFALSKKEGIIPAIESSH ALAYALKIAPELKGKKILVNLSGRGDKDIDFVVEKYGYGE >gi|197325096|gb|DS990370.1| GENE 139 137080 - 138072 797 330 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase [Acinetobacter baumannii SDF] # 5 306 13 318 356 311 52 2e-83 MQKFNYKDSGVDIAEGNALVESLKGLVKSTFNANVLGGIGSFSGAYALPSGYKEPVILAA TDGVGTKLRLAIDYGILDSVGIDLVAMCVNDLICNFATPLFFLDYYATGKLDKNKALEVI KGITQGCLEAECALIGGETAEMPGMYEGKDFDLAGFAVGIGEKEIVQRENQAKAGDVLIA LPSSGIHSNGYSLVRKILSQNKIDLEANFDGKPLIQTLLTPTKIYVKTFKKLQNKIKALA HITGGGIIENLPRCLPNNLDALIKENQIKTLPIFDLLTKYTEETDKYRTFNMGVGMIFVC SQEDADFVAKESQGYILGELTKGNHEIKFV >gi|197325096|gb|DS990370.1| GENE 140 138074 - 138853 963 259 aa, chain + ## HITS:1 COG:no KEGG:Dole_2689 NR:ns ## KEGG: Dole_2689 # Name: not_defined # Def: SH3 type 3 domain-containing protein # Organism: D.oleovorans # Pathway: not_defined # 116 257 14 152 676 75 34.0 2e-12 MRLYAIMLRTFYKKADIMLANIKRFFKIYPLPIFVLLLVFAIYYSIFEILKKQDLKTTKP ITEAELMQSETPKESPTTPEPIQDPKLETPQPNTPTLVENKIEEKVEIKVENKKIITSKV PSLNIRQEPNVNSAIIGKLTPYIQAIVLEDNGEWFLIGASQNSKALGWVVKTYTQTLPQK VISQDTEVIKIDLPQFFTSLAPRLNIRQMPSTQAKVLGVLTPEDSVEVLESAGEWVKIQD INPTSNKSGWVMRRFLKEI >gi|197325096|gb|DS990370.1| GENE 141 138857 - 139645 727 262 aa, chain + ## HITS:1 COG:HP1249 KEGG:ns NR:ns ## COG: HP1249 COG0169 # Protein_GI_number: 15645863 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Helicobacter pylori 26695 # 3 244 6 248 263 210 50.0 2e-54 MQFAVIGNPITHSLSPLLHNSAFRTLGIKGYYGRYCLDNSENFSTLTSLKLKGANVTIPY KETAFSHCDEVFGIAKQIQAVNTLVFKENKLLGYNTDALGFYQCIEKFQFKNALILGAGG SAKAVACILKDKGITTTILNRSKERLESFIALGFQCSTYDNFFKQESYDIIINTTPSGLI QNSLPLEESKLKALLEDSKLAFDLIYGIQTPFLNLAKNLHIPTQDGKMMLINQAILAFEI FMDSLGITYHKNNLISSMQNAL >gi|197325096|gb|DS990370.1| GENE 142 139684 - 140232 416 182 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229532345|ref|ZP_04421727.1| SSU ribosomal protein S30P; sigma 54 modulation protein [Sulfurospirillum deleyianum DSM 6946] # 1 182 1 171 171 164 45 3e-39 MNTTITSRHFELTDSIKNYIFRLSESLEKYNLNILSTRIVISYQEKKGKEKKKRSYTIDI TLSIAKTNTIVISQKDKDLYTAADLAFSRMHKVLRRYHDKINHKQATPSEEITAIEILRN EAKASNQEDEIVPMDLDLHKPLDIEDALERLKSSSQQFFVFNDKDSKMRVIYKRIDGKYG LY >gi|197325096|gb|DS990370.1| GENE 143 140210 - 141463 959 417 aa, chain + ## HITS:1 COG:ECs3939 KEGG:ns NR:ns ## COG: ECs3939 COG0617 # Protein_GI_number: 15833193 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Escherichia coli O157:H7 # 9 320 2 325 412 214 40.0 3e-55 MENTGFTKKIYLVGGAIRDYLLGLPTKDKDYVAVGFSENDFQRYQKVGKNFPVFLIDSHT QIALARKETKTTKGYNGFSYKTDNVTLLEDLKRRDLSINAMALDLNSNTLIDPFNGKKDL QNKILRHTSPAFCEDPLRILRLARFKAKLGIHWKIHPSTKVLVHSMKEELKTLEPNRVFE EIKQVLSQKNSHLFFETLFELGVLKEIFPSIYALTILKEYNPNHLESSVFVHTMEVLKRL DNDSLLLKLTALYHNIAKPYTYRNSKNPNEYDNPKKVESLIDMQIPKTIQKKMLILIGNH IKITHLFAMHPSKILDFFHSFKGDKTLLLDQIRFFEADYKRCISQAQYTTLESKKIIELF SQINSYSPKEWIQSQKSKPNGNQIKDHIQKAKINLISSFLSTLSDKQSLRAKPDPNH >gi|197325096|gb|DS990370.1| GENE 144 141417 - 142697 1370 426 aa, chain - ## HITS:1 COG:BS_nrgA KEGG:ns NR:ns ## COG: BS_nrgA COG0004 # Protein_GI_number: 16080704 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Bacillus subtilis # 26 426 5 401 404 357 53.0 4e-98 MMKKIILMLGLAVFGFASENVILSVDTLFLIACSGLVLLMTPALGMFYAGMVNRNNVLST TINSVILYALIALQWIIIGYTLAFGDDIGLLIGNLNHIFLVGIDGQSVGNVSENLFMFFQ MLFAVIGAAIITGSLAERMHFGALLIFILCWSTLAYDVLAHWVWGGGWLMEIGSLDFAGG GVVHIAAGVAGLVGCIMLGKRKYAQGIMPHNLPLSFIGAVFLWMGWLGFNTGSALSVNSV AVNAFLTTNFSVVGAMLSWMLVEWIKYGKPTLLGSITGIVAGLVAITPSAGFVTPFAAVL IGFIASPICFFATSYLKSKFGYDDTLDAFGLHGVGGIWGGIATGLFATSSVNGIIKEDAA GEGLFYSGDVSLLVVQIVAVLACFVLSGVVSYVILKIIALFNPLRVEESQEINGLDQALH GEIAYR >gi|197325096|gb|DS990370.1| GENE 145 142716 - 143063 603 115 aa, chain - ## HITS:1 COG:CAC0681 KEGG:ns NR:ns ## COG: CAC0681 COG0347 # Protein_GI_number: 15893969 # Func_class: E Amino acid transport and metabolism # Function: Nitrogen regulatory protein PII # Organism: Clostridium acetobutylicum # 3 115 4 116 121 103 50.0 6e-23 MEKIYKVEIITRSEKLNVLKDTLSAKGIKGMTVSNVMGAGNQKGKTEVYRGNEMRIDLLP KIRIEILSKESMVDEIIQVAKECLNTGNVGDGKIIIYPVSNVIRIRTNQEGTDAI >gi|197325096|gb|DS990370.1| GENE 146 143208 - 144215 1002 335 aa, chain + ## HITS:1 COG:Cj0500 KEGG:ns NR:ns ## COG: Cj0500 COG2603 # Protein_GI_number: 15791864 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Campylobacter jejuni # 1 304 1 302 332 233 39.0 3e-61 MQKDIEIQNFLDQNLPLILDVRSPREYELSHIPTAINFPVLQNDEFERVGTLYRQDAFGA KILGASLICQNISTHLLKLKEKITPAIPFGIYCARGGMRSHSFALILQHIGYRVLVLEGG YKSYRKFITQSLDQAPTHRFLTLIGPTGSGKSEIISAFHHSLDIEQIAKHLGSSFGQICG NQPSVKMFQNLIFTRLRELQNAPFVLVEGESKKLGNLILPTPLYNAYQKAPKILILSPLE QRIKRIIAQYGKISEKFFKDSMQKIAPFMKKQFWQEAYDAFFANQLEKVAEILLVEYYDK VYKKESFHQVVHYQSTTQAIAEIKAFAEEFYKIKE >gi|197325096|gb|DS990370.1| GENE 147 144218 - 145309 1417 363 aa, chain + ## HITS:1 COG:HP0171 KEGG:ns NR:ns ## COG: HP0171 COG1186 # Protein_GI_number: 15644800 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Helicobacter pylori 26695 # 1 358 1 360 363 441 69.0 1e-124 MDSYEYGELLKELEIKRQNIEKIMQPSQLQSRIEEIESLEQQKEFWEDSKKAGEYQKEKK RCLRQLEKYKEASLALSDAKELFELSSDDEETLNELFNEAPMLEEQIKKAEIEVMLSGEL DSNNAIFTITPGAGGTESQDWASMLYRMYLRWAERCGFKVELLDYQEGDEAGIKDASFII KGENAYGYTKVENGIHRLVRISPFDSNAKRHTSFASVQVTPEIDDNISIEIEEKDLRIDT YRASGAGGQHINKTESAIRITHIPTGIVVQCQNDRSQHKNKATALKMLKSKLYELEQQKR NEQIANDDKSEIGWGHQIRSYVLAPYQQVKDLRSNIAYSNVEAILDGDIDSILEGVLIHI NSK >gi|197325096|gb|DS990370.1| GENE 148 145358 - 145870 749 170 aa, chain - ## HITS:1 COG:jhp1088 KEGG:ns NR:ns ## COG: jhp1088 COG0716 # Protein_GI_number: 15612153 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Helicobacter pylori J99 # 1 169 1 163 164 168 52.0 5e-42 MSKIGLFYGSDGGNTQRVAEKIATNLREKHSKEVEVFDVAKASKEDLKGFTNLILATPTY GSGEIQSDWEEFLTALSPSDFEGKVVALVGLGDQDTYSDTFSNGVFEIYNQVSKTAKIIG KTSTQGYEYEESNSAIEGEFIGLILDEDNQEDLTDARIEKWCDSIAKEFI >gi|197325096|gb|DS990370.1| GENE 149 145887 - 146087 136 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTAIAKTQTITNKVSMEYPLLNNFFELYTKLQEVTRYLKENLVFINKKHYYNYLLRIIIL DSPHLN >gi|197325096|gb|DS990370.1| GENE 150 146020 - 147777 515 585 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 [Haemophilus influenzae 7P49H1] # 11 585 9 557 618 202 26 1e-50 MFNKGYSIDTLFVIVCVFAMAVISGIILNKLKIPTIIGYIVTGVLTAYIFNFRVEDSTDL SEIAEMGIVFLMFMIGLDFSFKKMSSIKQEVFLFGGLQIGLSILTFFFICYSLFGFNFDT SIIVASAISLSSTAIVLKHLNEVNQTKTSYGIASVGILIFQDLAVIPILLMIKLLSSKDL AMSDLLLTTGISAFIVVLLLLLPGRFLAKIILRSSAKMKTDEIFVGTVFLIVLGSAFLSQ SFGFSMTLGAFLSGMIISSTSYKYQVAAVLVYFRDLLLGIFFITIGMQVDVIFLAKYFII IILLVFLTLLAKTLIMFAFLSFFRGTKIAMKIALSLSQIGEFSFAIFLLASQHKILNLQL DGGILKYVFGTEFFASITPTEIHQFLTLMVIFSMIATPFILDNLDKCTAFALKTIKIPQK TSTTYTQEQQEEEKESKKRILICGYGLVGQKIFDFLKDYDIEVFGIDSNYERVEKGIIRG DKIIYGNITDKMIFREVEIQKVTAVILCIESPVEIEKACRHILALSKYTKIIVQTRDNAL ESELKAMGLYGVINSTMEIATILSNLAIEAIKEEEEKQGESTKEI >gi|197325096|gb|DS990370.1| GENE 151 147906 - 148418 790 170 aa, chain + ## HITS:1 COG:ECs3606 KEGG:ns NR:ns ## COG: ECs3606 COG0175 # Protein_GI_number: 15832860 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes # Organism: Escherichia coli O157:H7 # 6 170 3 167 302 241 69.0 3e-64 MSSIIQNNYSHLDYLESESIYIMREVIAEFEKPAMLYSIGKDSSVMLHLLQKAFYPAPLP IPLVHVDTTWKFKEMIEFRDKTAKELGAKLIVYQNPKIKELNLSPFTHGSSMHTDISKTQ GLKQMLDLYQFDAVFGGARRDEEKSRAKERIYSFRDANHTWDPKNQRPEL >gi|197325096|gb|DS990370.1| GENE 152 148572 - 148823 243 83 aa, chain + ## HITS:1 COG:SMa0855 KEGG:ns NR:ns ## COG: SMa0855 COG0175 # Protein_GI_number: 16262921 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes # Organism: Sinorhizobium meliloti # 2 83 218 299 299 107 62.0 5e-24 MGAKILVDDERMPKELAKNAKEELVRFRTLGCYPLTGAINSSASNVLEIIQELLLSKSSE RQGRLIDTDEEASMEKKKKEGYF >gi|197325096|gb|DS990370.1| GENE 153 148823 - 151966 2843 1047 aa, chain + ## HITS:1 COG:PA4442_1 KEGG:ns NR:ns ## COG: PA4442_1 COG2895 # Protein_GI_number: 15599638 # Func_class: P Inorganic ion transport and metabolism # Function: GTPases - Sulfate adenylate transferase subunit 1 # Organism: Pseudomonas aeruginosa # 5 440 11 432 451 453 51.0 1e-127 MNLNEIKEYLKQHENKELCRFITCGSVDDGKSTLIGRMLYDSKTLFEDQIKTLEKDSQKN KNSKEGQNLDFALLVDGLASEREQGITIDVAYRFFTTQKRKFIIADTPGHEQYTRNMATG ASNADIAILLIDARKGVLTQTKRHSYIVSLLGIKQFIIAINKMDLVDFKQEVFDQITKDY KAILPSLQNYEDIKIHFVPICAIDGDNITSKSANMPWYSGETLSTLLDTLPITTNINQDF IMSVQYVNRPHLNFRGFCGNIASGSVRVGDEIVILPSLKTSKIKEIITPNIKELRPSKDQ KIQSSKSASFPSAITLTLEDEIDISRGDIITAKNVEIPISNAFKAMIIWMSEIPLNLHEN YLIKIANLTTNVIFSQIDFKKDINTFEEYPAKTLELNDIAKCTLNLNKKTALEIYKKNKT LGSFIIIDKYSNETLAAGMIEEILDTKSENRIYTQAERELNAYIRKNYPEWECKKNMKVI VALSILTLLLLLVSGKFRASLPFGGVALLYYLLGYLDLKTFLGSYTSDSLVVLVLLLLVS IAVEKSAVMSYASKFIIGKSYYFSLFKLGVIVSAISAFLNNTAVVASFMGLIKNNKFQNP SKLLIPLSYFSIAGGTMTLIGTSTNLIVNSFVVQNGLESLKIFDFFAVGFCISLGVMIIL MLFSKLLPNYTDKEQEISEYLISAKVLPNSPLIGKSIEKNGLRKLEFLFLIEILREGRSL SPVSPDEIICKEDQLVFSGDVAHLETLKEFKGLEIGKQNPKIKDLELVDAIITPNSNLIG KSVKEANFRTKFDAGIIALKKGSQNISKIGSSILSAGDRLILSVGKDFKTRDNILKNFYI ISNINKLQKLNKAQSLFIVFGFLSVITLSALGIFSLLKALIVFLFVLLVFKFLKFDEIKR RFPLDIFIIVGSSLAITKVLVESGLAQDFANLIISIFGQYGVYGSFIGIYLLTLLLTEMI TNNAAAALAFPIALATAQSLGVSPIPFIFAVAYGASCGFMMPHGYQTHLMVTSMCGYKTM DFVKIGFVVSLTYSIIALSLIPIFFSF >gi|197325096|gb|DS990370.1| GENE 154 151975 - 152568 577 197 aa, chain + ## HITS:1 COG:CC1482_2 KEGG:ns NR:ns ## COG: CC1482_2 COG0529 # Protein_GI_number: 16125729 # Func_class: P Inorganic ion transport and metabolism # Function: Adenylylsulfate kinase and related kinases # Organism: Caulobacter vibrioides # 3 189 8 196 205 254 62.0 7e-68 MENNLTWHDTKITKEQRSKLKTQKPCVLWLTGLSGSGKSTLANALEQRLFTMGYHTYLLD GDNVRHGLNKDLGFDENSRVENIRRIGKVCKLFVDSGLIVLCAFISPFCKERQIIRELLD KGEYIEIFVDTPIEVCKKRDPKGLYKKARNGEIKNFTGIDSPYEAPENPEIHIKSENLDE NIETILKYLLKKGKIHA >gi|197325096|gb|DS990370.1| GENE 155 152561 - 152848 385 95 aa, chain + ## HITS:1 COG:aq_337 KEGG:ns NR:ns ## COG: aq_337 COG1218 # Protein_GI_number: 15605852 # Func_class: P Inorganic ion transport and metabolism # Function: 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase # Organism: Aquifex aeolicus # 7 93 2 88 268 89 48.0 2e-18 MLNSIKLETIQEIALKAGKAAMGIYKKDFVIYEKEDKSPLSEADLLCNEIICNALSPFNL PLLSEENKIIPYKERKKWEYFWCVDPIDGTKELAS >gi|197325096|gb|DS990370.1| GENE 156 154913 - 155689 855 258 aa, chain - ## HITS:1 COG:Cj0343c KEGG:ns NR:ns ## COG: Cj0343c COG0730 # Protein_GI_number: 15791711 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Campylobacter jejuni # 27 244 21 241 261 160 48.0 3e-39 MEVLALDFWSAGGLLAVGLLAGILAGLFGIGGGAIIVPMMILLGNDIKIAIGISIMQMIF SSVYGSYVNYKKKNLDFRDGVYVGIGGLIGASFSGVVVSSMPSSILEIIFSLFIVYSIMR FFFTNAYGGERKVGEGWKSILFLIGCGCVVGVFAISLGIGGGMMLAPLLAYYLGYSSKQI VPISLFFVIFSSVSGFTSLALHGYVDYAQGCIVGIASLIGVRIGIWTLSKVDSKKHKYAL LAMYLFILAIMFEKMLFG >gi|197325096|gb|DS990370.1| GENE 157 155832 - 156029 135 65 aa, chain + ## HITS:1 COG:no KEGG:WS0997 NR:ns ## KEGG: WS0997 # Name: selD1 # Def: selenophosphate synthetase # Organism: W.succinogenes # Pathway: Selenocompound metabolism [PATH:wsu00450]; Metabolic pathways [PATH:wsu01100] # 1 65 58 122 383 93 69.0 3e-18 MGLEDLSHLSCNLKNNKDPNILVGFSGNEDAGIYKISDELALVQSADFITPLVNDPYSYG QIAAA >gi|197325096|gb|DS990370.1| GENE 158 156375 - 157112 802 245 aa, chain + ## HITS:1 COG:Cj1504c KEGG:ns NR:ns ## COG: Cj1504c COG0709 # Protein_GI_number: 15792818 # Func_class: E Amino acid transport and metabolism # Function: Selenophosphate synthase # Organism: Campylobacter jejuni # 2 245 73 308 308 176 41.0 2e-44 MWDSCHLDSQMISEVLEGGLSKIKEAGGVLLGGHTIGDKEQKYGLSVTGIIHPQKIWRNN TGQIGDCLILTKPIGMGILTTALKADMLDSKTELKISQIMATLNQKAAKIASKYTIHACT DITGYGLLGHLYEMTNPKISIKLYSNQIPLLQEAIEFAKMGIIPGGSHSNQKAINPYCHF NLPLDSLYLGVEILLFDAQTSGGLVFATPYNQAQSLLNELKSEGIDSAQIIGEIIPTNDS PINIA >gi|197325096|gb|DS990370.1| GENE 159 157271 - 157816 487 181 aa, chain - ## HITS:1 COG:no KEGG:Amuc_0758 NR:ns ## KEGG: Amuc_0758 # Name: not_defined # Def: hypothetical protein # Organism: A.muciniphila # Pathway: not_defined # 2 159 72 230 268 98 33.0 1e-19 MILEQIQENDILIFLDIGFEFNPNKHDLLLEMVAQVEENEIMGLDAGLEHCAEKYWNKAD LLAHYGLLDDKEFLDSPQMIGGAIFCKKTFRVCNIIQEWLNVFYEHYNFVDDSPSKIPNL PTFRENRHDQSVWNIIAKREKVKSFPSSFYWERDEKVALSCNRNKIYLPHDVKKQKNSMN L >gi|197325096|gb|DS990370.1| GENE 160 157867 - 158079 113 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253827978|ref|ZP_04870863.1| ## NR: gi|253827978|ref|ZP_04870863.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] # 1 69 1 69 269 145 100.0 1e-33 MDRKIYLCSFADTRLGISACRFKQQAEAMKVFDEIFIFTEASLPLKFREDFNDKFYSNYQ QAKASGGGGI >gi|197325096|gb|DS990370.1| GENE 161 158127 - 159593 1566 488 aa, chain - ## HITS:1 COG:HP0974 KEGG:ns NR:ns ## COG: HP0974 COG0696 # Protein_GI_number: 15645589 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglyceromutase # Organism: Helicobacter pylori 26695 # 2 488 4 491 491 599 59.0 1e-171 MKTILVITDGIGYSKQEKFNAFLEAKKPSYDRLFKEVPYGMIKTYGLSVGLPEGQMGNSE VGHMCMGSGRILYQDLVKINQAIKEGRLLGNPALEVLKECKRIHLVGLMSDGGVHSHLEH ILALAEGLQERFEILLHLITDGRDVLPQTALKFLEEVERRIQNKNIKIASISGRFYAMDR DNRWERVEEAYNVIVCAENLQTISPKQYIQEHYNQGVFDEFIKPASFDASGIKKGDGLIF VNFRSDRAREIVSALGNEEFSGFERKKWTPIPLVIMTPYDKNFNFPILFPKESIPNTLAE VISNHNLRQFHTAETEKYAHVTFFFNGGIEDPYPNEMRVLVPSPKVKTYDQKPEMSAREV GDMVLKAMEEDYDFIVVNFANGDMVGHTGVFEAAVRAVEAVDREIGRIYEKSKEKDYAFV MTSDHGNCEEMQNDKGEILTNHTTGEVWCFVSAPSVKEVKNGGLNNIAPSILKLMGLQIP QEMDEALF >gi|197325096|gb|DS990370.1| GENE 162 159673 - 160731 1014 352 aa, chain + ## HITS:1 COG:jhp0445 KEGG:ns NR:ns ## COG: jhp0445 COG0472 # Protein_GI_number: 15611512 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Helicobacter pylori J99 # 5 351 6 352 353 398 61.0 1e-111 MLHYFYEFLNINLFQYITFRAAIAFFVAFLMTIFLMPYYILWASSKKANQPISQFAPKNH QEKVNIPTMGGIVFVFSTLAAALLCAKLNNSYVILGIFSLVLFSSIGIYDDFSKVMQKKN AGMNARTKFALQGLSGLFIALGLYFYGMDSHLYLPFLKNPIWDWGILSLLFWMLVFIATS NAVNLTDGLDGLVAIPSIYALVSLGVFVYVAGHSGLSAYLLYPKIQESGEVVILSAALIG ALIGFLWYNCHPAQVFMGDSGSLAIGGFIAYMAIISKNEILLFVIGFIFVVEALSVLLQI GSYKTRGKKLFLMAPLHHHFEEKGLKESKIIVRFWIVALMSNLIALLTLKLR >gi|197325096|gb|DS990370.1| GENE 163 160743 - 161957 1448 404 aa, chain + ## HITS:1 COG:Cj0432c KEGG:ns NR:ns ## COG: Cj0432c COG0771 # Protein_GI_number: 15791799 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Campylobacter jejuni # 4 404 5 402 402 392 51.0 1e-109 MLFLIGYGKTNQAIADKFSPCYIFDDNFKEVSKDSKGNTLLPSNQLKNYLEKYPNAQIIT SPGIPPQNPMIKLSQPISEYDFFAPTMPFSVWISGTNGKTTTTQMLTHLLQNKGALSGGN IGTPLANLNPKAPLWILETSSFTIHYTNIAKPNLYLLLPITQDHISWHGDYESYIADKLK PLLSMKDKEIAIIPQSLQSHPFCQKTLAKLFFYSNSQSLAKQFFLDLNKIAFKEPFLLDA ILALSATQILFNEVDYDLLNSFKIGAHKIEEFFDSQNRLWVDDSKGTNLDATMEAIKRYQ NQTLHLILGGDDKGADLTPLFALMEKCQITLYAIGSNTQKIALLAKNHHIPCFPCHTLEI AVQEIHKHHTQQSIAMLSPAAASLDQFSSYKERGDKFKVYVQSL >gi|197325096|gb|DS990370.1| GENE 164 161961 - 162860 939 299 aa, chain - ## HITS:1 COG:Cj1000 KEGG:ns NR:ns ## COG: Cj1000 COG0583 # Protein_GI_number: 15792327 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Campylobacter jejuni # 1 289 1 289 293 281 51.0 8e-76 MKIRDLEIFLDLLHTKSPTLTAQNFKITQPNVSVLIRNIEKMLGITLFERLGKRLVPTTQ ALYLGSLWVEVVQSYYSSLEALGEEGILIGEINLVATHTIGEYFLPRILFDFAKAYPKVK VNSKIYNTQECLNLLKSGSVELALVEGEIGLEYAQSEGLIREVLCEDRLIVASNDFILAS KPRYIDELLDKKWIFREYGSGLRDSFLNALGKLKKEVPIFLELDRTTAIKDLVVNKGAIA VFSEVAIQQELKNGILFSIEIVNLNLERHFYSLRRKSHPINIILMRFEEFINESLQNKH >gi|197325096|gb|DS990370.1| GENE 165 163045 - 164157 1158 370 aa, chain + ## HITS:1 COG:Cj0999c KEGG:ns NR:ns ## COG: Cj0999c COG2855 # Protein_GI_number: 15792326 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 6 370 8 365 365 405 69.0 1e-113 MLKNEHLFKMISSNFKGLLLVGLIVAFAFYLSGIQAIQDTTHLAATAFAIIIGAALSPWF FRFQHTLQAGVHFSAKKLLRLGIVLYGFNITFSELYNVGFYGFLIAFIVIVSIFLIALFA GTKIFKLDRETSMLVGAGSAICGAAAVLALESSLKSDSFKGVVAVGSVVVFGLIAMFLYP IAFSTGIIPSLDSNGMGLFMGATLHEVANVAGAAEMAKEMTNGIFTQSAANLAVIIKMMR VILLVPFLLIVAYFIARDNNAQNTAQRTSKKIDIPYFAFMFLGVIVLNTFLSAHKDTLIL NTFSIQSIIESGRFLCTLCIVFAMAALGLQIDFKKFIKLGGKAFGLAFLLFIILIFGGYL LTLCFQGILW >gi|197325096|gb|DS990370.1| GENE 166 164169 - 164480 430 103 aa, chain - ## HITS:1 COG:no KEGG:HH0922 NR:ns ## KEGG: HH0922 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 100 1 97 109 66 37.0 3e-10 MQYYGKNYKSLAKAVYKEDLKDILENEEWICVDIRMPEDFRRGHLRGARNITTQEELQEV LNQDKKILINCYLGHSASLLGTDLVEAGYLNIYYLDEAVANCL >gi|197325096|gb|DS990370.1| GENE 167 164484 - 165077 483 197 aa, chain - ## HITS:1 COG:jhp0746 KEGG:ns NR:ns ## COG: jhp0746 COG0742 # Protein_GI_number: 15611813 # Func_class: L Replication, recombination and repair # Function: N6-adenine-specific methylase # Organism: Helicobacter pylori J99 # 11 194 10 199 200 141 41.0 6e-34 MQIDNSKKATLKVIGGIFKGRNLQMAPLEITRSSKAILKESLFNTLNCDVVGSNFVEFFA GSGSIGIEALSRGAKSAIFFEQNRESYEVLKSNIQKVCKDCDCQIIFGDTFENYKETLKG IKDFSIGYFDPPFDMREGMEGIYEKCFKIIKSLDSNVFGIVVLEHISSLRIPQNLGDFEC VKTRKFGKSALSYFVKG >gi|197325096|gb|DS990370.1| GENE 168 165064 - 165507 576 147 aa, chain - ## HITS:1 COG:no KEGG:WS1965 NR:ns ## KEGG: WS1965 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 139 1 116 121 70 33.0 2e-11 MKIALISDSLLLGKTLEMYLKDYLTSYKFCDFVVATQPIDSQKPVFLIGEYENASLNKPF TKEVLIDRLQRFFERIQKQEENKEEEEIKQANVESANWREMLSDLEFQKQEKRDDVLHEK IRDVLERYAREIEGIILEHWKESYADR >gi|197325096|gb|DS990370.1| GENE 169 165642 - 166289 883 215 aa, chain - ## HITS:1 COG:PM1952 KEGG:ns NR:ns ## COG: PM1952 COG2032 # Protein_GI_number: 15603817 # Func_class: P Inorganic ion transport and metabolism # Function: Cu/Zn superoxide dismutase # Organism: Pasteurella multocida # 32 215 1 186 186 166 46.0 3e-41 MKDVFLKIFLFLNQYGKMFFAFKNIDIRSEIMVKKIVMGAFALGMVSSFLIAQDETKLYN PKSEKNHLAIKMEILGNNGNVEAGEIIAVETQYGVAFYPNLKGIESGIHGFHVHTNPDCG ATEKGLGMKAGGHWDPQETKAHSFPWFDNGHKGDLPALYSDSKQEVKTPVLAPKIKTLQE LKNHSLMIHVGGDNYHDHPQALGGGGARMVCGVIK >gi|197325096|gb|DS990370.1| GENE 170 166382 - 166870 870 162 aa, chain + ## HITS:1 COG:Cj0066c KEGG:ns NR:ns ## COG: Cj0066c COG0757 # Protein_GI_number: 15791458 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase II # Organism: Campylobacter jejuni # 1 159 1 158 159 194 61.0 6e-50 MKVIVIQGPNLNMLGIRDPRIYGPAKLETIHQNIQKHAEQIGLEVDFFQSNFEGEIVDKI QEALGQYDGIVINPAAYSHTSIAIRDAISAVNLPTIEVHISNIHAREEFRHKSITAGVCA GVVAGFGPMGYHLALQGLSQILNEIQAIKQAREQQAQANANS >gi|197325096|gb|DS990370.1| GENE 171 166885 - 167928 1313 347 aa, chain + ## HITS:1 COG:jhp0387 KEGG:ns NR:ns ## COG: jhp0387 COG0006 # Protein_GI_number: 15611455 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Helicobacter pylori J99 # 2 345 7 357 357 345 52.0 6e-95 MENFIIKDENALYFETHYSCDNAIFLAIDQKGYFITDGRYETEAKEHIKSTQYEIEILIS HDLIRTARNILKKHEKATFIFNPQEFSLYFYEKLTSGLKINFLPKPNFHQEKRICKTKEE IALIEHSQKLNIKAFDKFAAWISKNAKDRSEAFLHFKSQAFLTKKGKYDLSFNPIVGINA NAAKPHALPSNDLLLKGDLLLFDAGIKYQRYCSDRTRTGYFSKNGFNFKKEQHFKDSTLQ KIYDIVLKAQKNAIKHAKAGMLACEIDALARDVIEKAGYGKYFVHSTGHGIGLDIHELPI ISARSKTRIEEGMVFSIEPGIYIPNKYGVRIEDLVVIESNGARILGE >gi|197325096|gb|DS990370.1| GENE 172 167903 - 168514 269 203 aa, chain + ## HITS:1 COG:HP1036 KEGG:ns NR:ns ## COG: HP1036 COG0801 # Protein_GI_number: 15645650 # Func_class: H Coenzyme transport and metabolism # Function: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase # Organism: Helicobacter pylori 26695 # 64 199 14 151 163 112 45.0 3e-25 MEQEFLENKPHLISYFGNKSYKIIPLKKDFLLYIPKHFPKNNTFSLARKIPKFRFIRQPS PYDLFKNKQKLQSYALLGIGSNQGDSLAIFWKLFLRLKKKNAIIAYSPFLKNPAFGYTKQ ADFFNGIIWIKTKLCYADFFSFCFYLERIFGRKRKREFKNAPRTLDLDILGFKNKTICFK HLCIPHKEWANRPSVTIPLKGFL >gi|197325096|gb|DS990370.1| GENE 173 168511 - 169122 777 203 aa, chain + ## HITS:1 COG:no KEGG:WS1642 NR:ns ## KEGG: WS1642 # Name: flhF # Def: flagellar biosynthesis regulator FlhF # Organism: W.succinogenes # Pathway: not_defined # 1 200 1 200 467 150 48.0 3e-35 MKLFTYNAETSALALAEAKKELGDEFSIISQKKLADGNYEISVAISEEDLKQLKTKQEQT KQEQTPPIKNNNIAERLELIAQKELERKRAAQSLQNLPEDVSLQLSDAVRQISQIAGVNT KIPPKSTYPKESPSPQIKDDSTPKKPKETTKAKKQEEAQDLSNLRIIRGEIDKLNDKIKL IQNMFWEEKGPKKEGLIIPHLAS >gi|197325096|gb|DS990370.1| GENE 174 169197 - 169928 176 243 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157804145|ref|YP_001492694.1| 50S ribosomal protein L32 [Rickettsia canadensis str. McKiel] # 37 231 95 296 303 72 25 2e-11 MQLTLELMPIKMRENSVLIKRYFREVLRKMVYARTENLNSNVKNIMMLVGPTGVGKTTTL AKLAARYSRMLNKNYKVGIITLDTYRIGAVDQLMFYAKKMKLSIDTVVDTEEFINALDSL KYCDYILIDTVGSSQHDRSKLESLKSFVNADPNTKIDVSLVMSATTKYEDLKDIYHTFST LGIDTLIFTKLDETHSYGNIFSLIYETKKATSYFSIGQEVPNDLMVATSDFLIDCLLDGL VRS >gi|197325096|gb|DS990370.1| GENE 175 170065 - 170781 732 238 aa, chain + ## HITS:1 COG:Cj0063c KEGG:ns NR:ns ## COG: Cj0063c COG0455 # Protein_GI_number: 15791455 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Campylobacter jejuni # 2 238 52 288 288 207 47.0 1e-53 MGFKVGIFDADIGLANLDILFGVRCEKNLLHVLKNQAKLKDIIIPIEHNLYLIPGDSGTD IFRYKSEFMFETLIEDSSLLDSLDFILIDTGAGIGEYTQTFLKNSDDSIVITIPDPAAIT DAYATIKLAANFKDRIFMLINMAKNQEEAEMIFNKIQKIAQSNIENIRLEYLGKLTKTPL INRYSKNRALFVKEEPNCNASMEIEKIARSLAAKLEQNVLVQEDKKFGKFLKKILGHF >gi|197325096|gb|DS990370.1| GENE 176 170800 - 171189 539 129 aa, chain + ## HITS:1 COG:no KEGG:WS1640 NR:ns ## KEGG: WS1640 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 3 119 1 117 117 112 47.0 6e-24 MALKMDNFLSFAIVNGFFIGLLLSFLKFDEPEMIVAWTLISTIGFYLITLVSVSLFVRFV NDQETHDKRTSYNATLEEYIQEFDKREKVANKIRGFLRAMEKTMREEEQEDQATQISKSK KEKTNAENF >gi|197325096|gb|DS990370.1| GENE 177 171173 - 171880 707 235 aa, chain + ## HITS:1 COG:HP1032 KEGG:ns NR:ns ## COG: HP1032 COG1191 # Protein_GI_number: 15645646 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit # Organism: Helicobacter pylori 26695 # 3 228 25 250 255 235 57.0 6e-62 MLKTSKGYENIIKQNQDNLALDYLPALKALAARLKERLPANVEFADLVSIGTEELIKLAR KYDQNLNDSFWGYAKSRVYGAMLDYLRGLDCMSRHTRTLIKSINKEISKYYNEYQEEPDN AYLSKVLNEDIEKIKEARNASEIYGILPLDEELSAAQEDKTYNKIEKQELIGIIQNILES ASKNEQLVIQLYYYEELSFKEISEILEISESRISQIHKSVIRKIRAYLEERGIDG >gi|197325096|gb|DS990370.1| GENE 178 171873 - 172931 1334 352 aa, chain + ## HITS:1 COG:HP1031 KEGG:ns NR:ns ## COG: HP1031 COG1868 # Protein_GI_number: 15645645 # Func_class: N Cell motility # Function: Flagellar motor switch protein # Organism: Helicobacter pylori 26695 # 1 349 1 348 354 466 71.0 1e-131 MADILSQEEIDALLEVVDDEGTEPESFEKPATIHQRQITLYDFKRPNRVSKEQLRAFRGI HDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPLDGTGVLE INPSIAFPMIDRLLGGKGDPYESTREFSDIELNLLDTILRQMMQNLKEAWAPITEIFPNV DVKESSPNVVQIVAQNEIVIMVVMEIIIGHSSGMMNLCYPVISLESVLSRLASRDIMLSE TSSKKSRNKELQALLGGAKVNVAAILGETKLTLREILDLEVGDIMRLDRPADDTVIINVD GREKFLASIGLHRYRKTIEIKEMIKTEKDQVKEILEMLESQRKSRANEIEDE >gi|197325096|gb|DS990370.1| GENE 179 172940 - 173797 1101 285 aa, chain + ## HITS:1 COG:HP1030_2 KEGG:ns NR:ns ## COG: HP1030_2 COG1886 # Protein_GI_number: 15645644 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar motor switch/type III secretory pathway protein # Organism: Helicobacter pylori 26695 # 195 284 13 102 104 132 78.0 5e-31 MLNNFLNLITQESISTIEGLLGQAPDVSHLQEKDGDKSALQAPMARVDIEADNGAKLAFF ISPKVATALADMMLGGEGSTKETMDDDDLDATKEIVSNIFGAVSTSLGAQKELPKLSFSL KDIHFISETADLETDRFTNFYTFSFNLGTIQDSLFLAFSEEFENLFKENSQETNQETPQP SIQNTNHQDNAALELNNAEMKNMAMLLDVRLQVKVRIGQKKMLLKDVIAMDIGSVVELNQ LANDPLEVLVDDKVIAKGEVVIVDGNFGIQITEIAPKKDRIEQLM >gi|197325096|gb|DS990370.1| GENE 180 173841 - 175184 1657 447 aa, chain - ## HITS:1 COG:jhp0209 KEGG:ns NR:ns ## COG: jhp0209 COG1066 # Protein_GI_number: 15611279 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Helicobacter pylori J99 # 4 447 3 448 448 561 64.0 1e-159 MAKKKAQIFECQHCGFQSSKWLGKCSNCGAWESFLELKEEHIEAFSSLKQTSKVTPITEV KEEEFIRFSSGESELDIVLGGGIVLGGMYLVGGSPGVGKSTLLLKISSNLAKIGKNVLYV SGEESSSQIALRAERLEAMNPNLYLLNAIQLEEIIAAIKNKDRNYTMLVIDSIQTLYSEK IASSPGSVSQVREVTFELMRLAKEWGICVFIIGHITKEGSIAGPRILEHMVDCVLYFEGD SSRELRFLRGFKNRFGNTSEVGIFEMRSNGLVGAKEASKIFFSQRTSSPGSALSVVLEGS RALVLEVQALVSDCAYGMPKRASTGFDTNRLNMILALLERKLEIPLNRYDVFINVTGGIK ILETAADLAIVAAILSSFRNRVLSSQSVFIGEVSLVGDIREVSNVEQRLKEALSLGIDKA ILPKKPPQNLGIKCFEVQEVTKIIDWM >gi|197325096|gb|DS990370.1| GENE 181 175278 - 176165 505 295 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157804145|ref|YP_001492694.1| 50S ribosomal protein L32 [Rickettsia canadensis str. McKiel] # 1 289 4 301 303 199 37 1e-49 MFDILKRTLQKTTQSIKEILPKAHKKLTKEELEEVLIATDMDYDLIELILSPLGDEISKN ELEVALLRLFRGESYYDKVQAKQVEAKPCVDLIVGVNGAGKTTTIAKLANRYKKQGKSVI LGAGDTFRAAAIEQLTLWGNRLGIPVIASKQGHDPSAVAFDTITSAVAKGIDCVIIDTAG RLHNQSNLQNELQKILRICNKAKEGAPHRKILILDGTQGTSSLDQAKVFSQTLGGIDGVI ITKLDGTSKGGAIFSIIYTLRVPILYIGVGEGAEDLVEFDESKYIQTILDSIFDS >gi|197325096|gb|DS990370.1| GENE 182 176165 - 176770 619 201 aa, chain - ## HITS:1 COG:Cj1207c KEGG:ns NR:ns ## COG: Cj1207c COG0526 # Protein_GI_number: 15792531 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Campylobacter jejuni # 1 195 8 184 185 96 29.0 3e-20 MILGIGLFFNACEKPKETLETTQEQATLENLNILMNNGEKLIINQRNTQDKNHNFKNIEP KKANVLQDLLVTSDKKNIKLLFFFTTWCEPCVAILSHLENLQKQFGDEIGIYGIAIDDLV GETENFQESVEVFIQENQYFLPLAYGKNREELFSALGGIDGIPLIVLYDEKGEYIIHYLG AIPEEMMEFDLSQSVAKMRTK >gi|197325096|gb|DS990370.1| GENE 183 176859 - 177836 1022 325 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224419060|ref|ZP_03657066.1| ## NR: gi|224419060|ref|ZP_03657066.1| hypothetical protein HcanM9_07250 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1357 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1357 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 325 1 325 325 616 100.0 1e-175 MQTRAILLKVFVGVMLAFTNGFGMQGEDITYTIYRFDKGKLYLAQNAQGILFAGVKNQKF QSCEISPNKVLENGKLECGEESFMIENGKIQDEVVLEDSFNLKSQEIVYQYSEDSPSQVS VLVLCSNDSKIQNLLELMYQKEFNCTNIRETFLPSLKESMQEYLKNTEGMEALEYLKKFP LEETIKDRLYYFDDEILVFEKMSYLYTGGAHGNYGKWGVVVSKKEGIIPLNEMIDLNNLE LKRLLWEEYQKYLAKVDDAVQDYIDFENFKVSDAILFGYDGMIFIYQPYEIMPYAYGIVE LKLPLEVIEKFGDFSHSALGYLFTK >gi|197325096|gb|DS990370.1| GENE 184 178587 - 180086 1447 499 aa, chain - ## HITS:1 COG:ECs5307 KEGG:ns NR:ns ## COG: ECs5307 COG0286 # Protein_GI_number: 15834561 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Escherichia coli O157:H7 # 1 491 7 479 493 285 35.0 2e-76 MQNTIDRITDILRRDDGISGAMHYSEQISWILFLKFLDDYERELKDEAFLNDVPYASILD SQYAWQSWAAPKKDGKLDVKNALSGSDLLEFVNNELFPYLKSFKNNEDFKSIAYKIGGIF EFIDNRIANGHTLREVINLIDELSFSKESDVFALGDVYEKLLKDMGSDGGNSGEFYTPRA LVKVMVEVINPKPKERIYDPACGSCGFLVESFLHILYEDRAKGQKANLSVEELEFLQKDA LFGKEKTPLSYAMGVMNMILHGIKSPNIIKTNTLSKRITDITESERYEVILANPPFGGKE KEQIQGNFIVPSNATELLFLQHILKSLKTNGRCAIIVPEGVLFQNSNAFVKVKQDLIENY NLECVLSLPSGVFLPYSAVKTNVLFFSKGLRGIVDEQDSNVYYYELIPPYKLTKNKPLEY VHFKEFLECYKQRKITPHSYLVSLEELKARNYDLSAKNPNTKEEKSLREVGAILESLHNT QNQVMTLLGELETQIHTKI >gi|197325096|gb|DS990370.1| GENE 185 180067 - 180804 743 245 aa, chain - ## HITS:1 COG:STM3755 KEGG:ns NR:ns ## COG: STM3755 COG3943 # Protein_GI_number: 16767039 # Func_class: R General function prediction only # Function: Virulence protein # Organism: Salmonella typhimurium LT2 # 12 154 13 158 345 113 41.0 3e-25 MQKSIKRNLTMDFLSFSLENQEEFLEVVYKNDDIWLSVALMAKLFECSSDNIYLHINNIY KENELDKNLTSEEISVVQKEGKREVKRKITFYNLDAIISVGYRINSYKATKFRQWATTIL KQFSIKGYVLDKERLKNGSVIDKNYFDELLELNRIVGMYLDYAEDRAKKNIAMTMQDWKD KLDSFLEFNEREILKDNGKISKKIADDFAKEEFHKFRVIQDKNYKSDFDKAILKALKDNN AKHNR >gi|197325096|gb|DS990370.1| GENE 186 180891 - 181682 856 263 aa, chain - ## HITS:1 COG:MA2415 KEGG:ns NR:ns ## COG: MA2415 COG0732 # Protein_GI_number: 20091246 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Methanosarcina acetivorans str.C2A # 71 259 4 186 391 120 36.0 2e-27 MRIVKILDSAFEKIDKSVELLKANLANLDELAQSVLDRAFNPLGDSIDSTESTQNPSTHD TQSPYPLPQHWEWKTLGEIGEIITGSTPSKNNPKFYGNDYPLFKPSDLGSGNTIKASDNL SKLGFENARKLPKNTLLVVCIGASIGKIGLSGIIGSCNQQINAIIPSPNVLSKYLFFVCH SKYFQSILKKNASQTTLPIINKTEFSKLEIPLPKDIKEQEQIAMHLDSVFDKIQKLKELY NAQLQDYEELKQSLLNQAFSGKL >gi|197325096|gb|DS990370.1| GENE 187 181853 - 182089 270 78 aa, chain - ## HITS:1 COG:no KEGG:HH1421 NR:ns ## KEGG: HH1421 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 78 2 79 422 96 47.0 4e-19 MTHLPQGWEVKTIEDVCKNSNSNLALKDIKDKSGDYPVFGASGIVGYVDFFHKAQECLGI IKDGAGVGRVFVLPKQSS >gi|197325096|gb|DS990370.1| GENE 188 182091 - 184205 1568 704 aa, chain - ## HITS:1 COG:yfjK KEGG:ns NR:ns ## COG: yfjK COG1204 # Protein_GI_number: 16130545 # Func_class: R General function prediction only # Function: Superfamily II helicase # Organism: Escherichia coli K12 # 30 499 39 524 729 188 28.0 4e-47 MPTNEQIGEKIFDKCVEIYEILNNDKEAEAKEKLLYLLDEIQDKALYPPILNHLIRQFGL YPYMNQDTSILEDKFLLECFKANIGEDEPKVLHREQSRVLKRLLSNESLILSAPTSFGKS FIIDALIAMRKPKNILIIVPTISLLDEARRRLIRKFHNYKIITTTQQINLESNNIFVFSP ERAIEYFSFMSKENVRLDFFIVDEFYKISKEYENERFAPLQNAILKYMNISNQRYYICPN IDKIKNENSILSKGMEFECLNFNTVFIHINKCYEDKDFKKEEKIIEIVKKDEKTLVYTQS QSNIKKVCKILVENAIIENSNALLENFAKWLSKHYGEHYLNDTLKIGVGIHHGRLHRCLS QLQVRLFDEKDLLKTIVSTSSLIEGVNIPAKNLILWDKRNGTKNINYFTYKNIIGRSGRM FKYFIGEVYLFESPNEDSNEEKILDVEIKSESLSINDEINNEIPDNIQAEVKNNQREIIN LIGVDKFNLLKKEASLKNDLKVIKKIIQILQYKDFDCGIFTHLFNDEPDKWYILSKIASI GEFHCKNIGDINTVELVKKLSQNWTKPLPELIEYMGIDLDDFFKLENHVAFKVASIFSDI NTLQKILYPEKAIDISSFVTKLSNAFLPSVVYTLEEFGLPRIVSKKLHKCGFIDFENKDL AIEQVLDKFKECTADAIINKLKEKNLYDDFEDYILNYFYEGLGQ >gi|197325096|gb|DS990370.1| GENE 189 184195 - 184596 84 133 aa, chain - ## HITS:1 COG:no KEGG:HH1419 NR:ns ## KEGG: HH1419 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 130 177 312 313 88 38.0 9e-17 MRNEARIIANPYELDNLAKHHNIQASTLANFKQIINENINLDELKSILHVPISIIYNCDY TKSIEEITDDYKTTIKNFHKEKGNKISEEIKKLSNKITYIDRIKFHIILFPVPDKEEIIS KINKIFESYRNAD >gi|197325096|gb|DS990370.1| GENE 190 184687 - 185112 316 141 aa, chain - ## HITS:1 COG:no KEGG:HH1419 NR:ns ## KEGG: HH1419 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 4 141 5 146 313 139 52.0 3e-32 MINTYVKNHANDNFIMILDETLCHQYHHFLLSISNQFESKKWKMKNFKNFIITNLKECTL TEQERQSLAGNEGEILDKAISKLRINERSGEIGEIFLHGIMREYYNALPIVPKIFYKQNR NVEALGFDSAHLTIENQECHL >gi|197325096|gb|DS990370.1| GENE 191 185128 - 186516 1020 462 aa, chain - ## HITS:1 COG:ECs5308 KEGG:ns NR:ns ## COG: ECs5308 COG4096 # Protein_GI_number: 15834562 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Escherichia coli O157:H7 # 1 460 309 803 810 226 33.0 8e-59 MLDYFASAVHLGLTATPKRSDNVDTYKYFGNAVYEYSLKTGIEDGFLTPYKVKRIITTLS DGYTYNPDDIVQGELQSGHYAPIKFEREITLPKYNEFIAKKILELIEPMDKTIIFCVNQA HASAIKIAIDIHKKIQRDDYCVRVTSDEGTIGLNYLKEFQDNDKSYPVILTSSKMLTTGV DAKNVRNIVLLANIGSMIEFKQIIGRGTRVYEGKDFFTILDFFGATKLFYDPKWDGESNA IDEESSTDSDTSFPASTKSNEQSNKTDKTPSQKVVIHLKSTKLKVLDIQTRYVGGDGKPL GTKEFLEFLIGKLGAYYDDEKKLKAMWSEPKNRQAFLKSLQNDGIDDEVLENLQEIFERK DCDIYDILAHISFSSEIVSRSERVISVRKSGFLQRFHKERAIRLIEFLLGYYEKHGINAF DNISTLLELSSLGSTQEIINDFVGISALKESIEDLQREIYGV >gi|197325096|gb|DS990370.1| GENE 192 186564 - 187454 655 296 aa, chain - ## HITS:1 COG:SP0510 KEGG:ns NR:ns ## COG: SP0510 COG4096 # Protein_GI_number: 15900424 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Streptococcus pneumoniae TIGR4 # 3 269 11 280 777 125 35.0 7e-29 MPLGETDTRIKFIDTKLKDSGWSEDFIKREYYFTDGRKLLGGKRGVRKFADYLLCFQNNN LAIIEAKRLGKDSLDGLSQAIEYGEILGVRFVYATNGIDIYEYDRLDSQGRYIDEFPSPQ ILFDRIFGNLLEWQHKLLTQKELHIPQKPLRYYQKIALDRVIQALINNKKRILLTLATGT GKTTIAFALCYRLLQSKWNLDNANRKPKILFLCDRITLRNQALNEFNPIEEDCKEISAGE IRKNQDKVPTSADVFFGIYQSLSSEENIQEDAEQDRHKEESKLYLHTQKISLILLS >gi|197325096|gb|DS990370.1| GENE 193 187715 - 188563 1157 282 aa, chain - ## HITS:1 COG:no KEGG:Cla_0124 NR:ns ## KEGG: Cla_0124 # Name: not_defined # Def: ATP/GTP-binding protein # Organism: C.lari # Pathway: not_defined # 2 281 1 278 278 294 56.0 3e-78 MLKKIAVSLALVGALAVSASSQEIEGFSHPESVFIVGEDVFVGNVGEKLEPLSKDNDGFI SKLDKSGKMIEKKFLSNLNAPKGMNIINGVLYVVDIDTLKGFDLKSKKEVLNLPIKDAIF LNDIVALDDENLLVSDTGTGIIHQVNVKNKQYETFVVVDSKFGGPNGILLDSKNNRLIAV GYDPNGKAKGSIISIDLTSKNQSALSEPLGALDGVVWAKNGDLLVSDWGENLQGVIYRLD KNGKIEKLDLPAMQGPADMVSDGENLWIPRMVEGKVLKITLP >gi|197325096|gb|DS990370.1| GENE 194 188753 - 189985 1004 410 aa, chain - ## HITS:1 COG:no KEGG:CCC13826_0614 NR:ns ## KEGG: CCC13826_0614 # Name: not_defined # Def: hypothetical protein # Organism: C.concisus # Pathway: not_defined # 3 392 5 399 400 357 49.0 7e-97 MKYLLKNKDKVVLEFEVEIDSEILKGQTIHYISLKNAKIFNENLLPRMVDKTKLLSSLES WIKQRKIPKNRQFAKNVLASIPTNIEDNLMAYVDISFALSLNDSYWIIPTNKDYKWKDYN LYENEFSEALALSAFGLKTTKANGFTSSPEYTTNGMLKKCWYRENDKVCLYKCISEMYNG LGEAYSEYYMAQIAEIMEFEHINYDLKMFHNQLVSSCEIFTSENEGYLPIYTLLDESIKN YNKLRLMREIPKIYGENAFNDLMVFDALIMNIDRHLGNFGMIVDNDTGEILRPAPIFDNG LSFMATLDKNDFCNIANSLDKDISYFELQFDEQLKIFIEPRHAKNLQKLSSFNFKRHEKY NLSEEWLKPIESYMQQRAKMALRFIEEHKHKLSKDSSEHSNESDNIRTML >gi|197325096|gb|DS990370.1| GENE 195 190369 - 190788 405 139 aa, chain - ## HITS:1 COG:Cj0517 KEGG:ns NR:ns ## COG: Cj0517 COG0239 # Protein_GI_number: 15791879 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Campylobacter jejuni # 3 136 2 122 122 72 48.0 3e-13 MNLYTIVLVGLGGFLGAVLRFLVYEVSFKISSFLANVTNMQFISLLATLFVNIVGSFALG FLFAYIQNEEFSLLSKDVLMSFFGVGLLGAFTTFSTFSYGNWLLLQNGLYGQLLLNILCN VGLCLLAVCGGFAIYKISG >gi|197325096|gb|DS990370.1| GENE 196 190880 - 191824 949 314 aa, chain - ## HITS:1 COG:jhp0222 KEGG:ns NR:ns ## COG: jhp0222 COG0181 # Protein_GI_number: 15611292 # Func_class: H Coenzyme transport and metabolism # Function: Porphobilinogen deaminase # Organism: Helicobacter pylori J99 # 1 307 1 304 306 305 56.0 6e-83 MQKIIIGTRGSVLALWQANFVKDSLEKQYPNLQVELKIVKTKGDKILDVPLAKIGGKGLF TKELEELMLKGEIDVAVHSLKDVPVEFVEGLGLAAITKREDVRDSFLSFKYKNLQELPQG AKVGTTSLRRVMQINTLRKDLDCMSLRGNVQTRLKRLKEGDFDAIILAQAGVNRLGIEGE VDCIAPLDFMIPAMGQAALGIECRVDSEVAKLLEFLNDTKASFETSAEREFVKTLEGGCQ VPIGINATLEKDNLTIRAILGIPDGSRILKDAKVCAVSSLEDCKKAGRDFALEFIKKGAK EILQEAQKWEFIKA >gi|197325096|gb|DS990370.1| GENE 197 191827 - 192228 480 133 aa, chain - ## HITS:1 COG:no KEGG:Saut_0907 NR:ns ## KEGG: Saut_0907 # Name: not_defined # Def: FxsA cytoplasmic membrane protein # Organism: S.autotrophica # Pathway: not_defined # 3 130 1 139 143 81 40.0 8e-15 MRLVLLVMYLIIEVFVSYEVIYIIGVLGFVLEILVSAFLGFGILLNFRLFFGEALEKLRL KEMTYEAFVGSNIFRILGAILLILPGAFTDILGLLMQFSVFGLMLVKPFVKVDSAKQNSD IIDVEVIEKEIKD >gi|197325096|gb|DS990370.1| GENE 198 192506 - 194236 2132 576 aa, chain - ## HITS:1 COG:Cj0543 KEGG:ns NR:ns ## COG: Cj0543 COG0442 # Protein_GI_number: 15791904 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Campylobacter jejuni # 1 573 2 565 569 694 61.0 0 MRFSKFFIPTFKEVPKDVILKSHEYLLRGGFIQQIGSGIYNFLPLGKKVLDKISRIVKNK MDEAGANEVLLGCVTPASLWQASGRYDRYGKELLRFKDRKENEFVFGPTHEETITELAKT YIKSYKQLPLHFYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHSNYEDLKREFDVMEKT YSAIFLELGLDFRAVEADSGAIGGSGSKEFMVLAESGEDTICVCDSCSYAANLEAANRLP KMPLTTPPEANFAKFHTPQIRTIESLAEFFKVDSYWTLKAVVKKALFDGGKSEFVFFFLR GCDSLNETKALNAINGANEIVDASEEELRKLGLFPRFIGPYALRNLTQSPYIYFDLELQN AKNLICGANEEDYHFVGVDLGLFEGLEFKDLLEVKEGDYCKECHKGKLYFTKGIEVGHIF QLGEKYSQAMEATFLDEEGKAKPFVMGCYGIGISRLLAAIIEQNHDEKGMKWTATTAPFL LDIVVSNIKDENQSELAEKIYHALSANGIECLLDDRKERYGAKMADFELIGIPYALIVGK GVEEGKIELVCRKNLEKINLEIADFESLIEKIKLAS >gi|197325096|gb|DS990370.1| GENE 199 194236 - 195564 1415 442 aa, chain - ## HITS:1 COG:Cj0542 KEGG:ns NR:ns ## COG: Cj0542 COG0373 # Protein_GI_number: 15791903 # Func_class: H Coenzyme transport and metabolism # Function: Glutamyl-tRNA reductase # Organism: Campylobacter jejuni # 3 433 2 423 432 360 47.0 3e-99 MDYYILSYSHKNTDIALREKLALDTKNKNTKQLLLELVENKFIEEAVILSTCNRIEFILS VHNPQKAEEFLFAKLCDYSGISEDSLKKHADSYDNIAAIHHLFSVASSLDSLVIGETQIS GQLKNAFKFSYDLGCCSLSLSRAIHFAFRCAASVRNSTNISRNSVSVASTAVAKAKEVFG ELKGQKVLVVGAGEMSSLCVKHLINHEAQIVLLNRDIGNAEHLREEILKSSPNAKIEVAS FRDLGVLINQLPLVFTATGAPHTIITQDMIEKKEMLRYWFDLAVPRDIDQVCDEKIHIFA VDDLQDIVKKNLALREEQAKVAYGIVGRCTQEFFAWLQTLNVEPLIKAIRQQAKDSSLKE LQKGIAKGYLPKEYEKNIEKTLHNAFNTFLHQLTINLKSVANTSRGDGIIESLRFLFEEN TETMMVEKYKCEYSDNKPLKED >gi|197325096|gb|DS990370.1| GENE 200 195573 - 196493 958 306 aa, chain - ## HITS:1 COG:Cj0541 KEGG:ns NR:ns ## COG: Cj0541 COG0142 # Protein_GI_number: 15791902 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Campylobacter jejuni # 4 306 1 297 297 254 49.0 1e-67 MEVLAQINQKIQDFLEELESPIVLGLSQKIQSGKMLRSKLALNIAGESDECILLCAIIEM IQNASLLHDDVIDNATTRRSQPSINAIAGDKNAIMLGDVLYSKAFCELSDFQESFPMIPR IVSNAVTLLAIGEMEDVELAKQFNANEAKYLKMIEHKTASLIESTAYAAAFLAGRNQEEA KDFRVYGRNLGIAFQIIDDVLDITANEKMLGKPILSDFKEGKVTLPYIYLYHSLNGLEKK RLENAFKKELSKEEQEWILQNLKESGAIQKSIDLAKHLGRVGIEAISNYSCDKLVKIMEE MINRDF >gi|197325096|gb|DS990370.1| GENE 201 196471 - 196908 374 145 aa, chain - ## HITS:1 COG:no KEGG:WS1583 NR:ns ## KEGG: WS1583 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 8 142 5 143 146 125 50.0 6e-28 MSKILFLLLCGISLLFAPIEWKAQNTIELKKDEFYVMKLQANQAQKTLYFRWTLLKNDGL VMHLNYDSFPHQFVLYEDYQRNCYKIALWKPVEGYYKEEPYFMLCFKDYKRVEKIATLKY YIYEGNRDFNIIDERKVANGSFGTN >gi|197325096|gb|DS990370.1| GENE 202 196901 - 197167 389 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224419077|ref|ZP_03657083.1| ## NR: gi|224419077|ref|ZP_03657083.1| hypothetical protein HcanM9_07368 [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] # 1 88 1 88 88 129 100.0 6e-29 MDHIFEGLPQDKWTEIVLNASHSSSSVELRRILERLAAMEILLEKRLGETWEEELQYLLS SEEVSEEIHTHTQNLAIESMGNILTQNE >gi|197325096|gb|DS990370.1| GENE 203 197178 - 198476 1761 432 aa, chain - ## HITS:1 COG:aq_782 KEGG:ns NR:ns ## COG: aq_782 COG0141 # Protein_GI_number: 15606160 # Func_class: E Amino acid transport and metabolism # Function: Histidinol dehydrogenase # Organism: Aquifex aeolicus # 5 430 6 425 426 390 47.0 1e-108 MIALLETQDVDFKIRFEELLKRGAMDILSVEGRVKELLESIKQKGKNAVVEQVSRFDNWE PKDFLDLKISQTQMQEAYEKLDTKLKKALQKAYERIYAFHSKQLPKTWLDFEENGSILGQ KVSAVDRAGLYIPGGKAAYPSSLLMNAIPAIVAGVKEIVVCTPTPNNEINPLLLAAMHLC GIKEAYKIGGASAIGVMAYGCEELQKVDVISGPGNIYVATAKKLVFGEVNIDMIAGPSEI GIIATPKAKVEYLAWDLLSQAEHDEMASSILITPSQSLAKEVALKIDEFLQQLPRKEITT NSINQRGAVIVTKDLDEAIFLMNQIAPEHLELIVENPLEILPKIKHAGAIFIGENTPEPI GDYIAGPNHTLPTGGSAKFFSPLCVDHFMKKSSIIAFSQQAIQELGEDCGILAHTEGLDA HQNSVLVRLNQK >gi|197325096|gb|DS990370.1| GENE 204 198495 - 200504 1981 669 aa, chain - ## HITS:1 COG:no KEGG:WS1946 NR:ns ## KEGG: WS1946 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 634 1 637 666 343 35.0 1e-92 MEQSTLNLLSAYMPMAQRYKSQFSSLNTLLSKTTLTGKISSLDIAANLFDYMEQTQEKFE NLQEKLINTIIEQSFLNLYEEAKTSSKIFSEMLSAFLQSRYGEILAFSKSRYILEQCANA QAQETIFEYLKEFANHSNAYKDILLFDDKGNLLKSLSSKVQNKTSLSVILEANNLEAFGD FYSKVDFYMQNGIQEEKQEFFFVLPLREDEGRPMKLVAVFVLDFQGIFEWLNRHFAYRFP QANLVIINQRNTILFSDNPKNFSIGQPLKVNVFGDYSFTEFRSKVCMLSQDGIEPMQVGS LVENWKVCRILPLYVAFDIKQQNKQKIDTEMLKDSLLITDELDSVIAEGENINEELGDAV INGEIIASKSHSYTLNPILNNIRILSEEMNTLCIQSTEELQKGIYGALFNIVNYYSKYAV TLMDNWMKESIDEIGWIKNIPEFSSFIVSKNDNKRSSITKENLQLFLKNLSESLKKYHNI LLFDREGNILVDALDEVKIDSNQKAKLVERIENGSLNAGIVPSNYEPTPLYGDNSTIIFY VGIKEGMRFIGGLAFVLDIQKITELIQNIIPKDSPIISDKSEIFVVLFDNHRNILASTNP DFSFEKYELNEKIDFKNIKDAEQIIQIGQKYYLLRTEVCLNSKGGFTEYTKKMLYSMVLV ALKEEVLEA >gi|197325096|gb|DS990370.1| GENE 205 200638 - 201183 417 181 aa, chain - ## HITS:1 COG:VC2432 KEGG:ns NR:ns ## COG: VC2432 COG3150 # Protein_GI_number: 15642429 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Vibrio cholerae # 1 169 7 182 195 113 35.0 1e-25 MLLYLHGFRSVGLCYKGSLIASFAPNALTPNLPYVPDLAIELIENLIEKYQKTQKICLVG SSLGGYYATFLAEKYQLKAVLINPVINAYQTLLPAIGKVSVPYNGENFIWTLDLVWSLKK YYVEAINPSLYCVLLQKGDRILDYRVAAQKFKDSKLVIQEGGSHHFDHFLSQKDLLLSWD S >gi|197325096|gb|DS990370.1| GENE 206 201238 - 201732 671 164 aa, chain - ## HITS:1 COG:Cj0779 KEGG:ns NR:ns ## COG: Cj0779 COG2077 # Protein_GI_number: 15792117 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Campylobacter jejuni # 1 155 3 155 175 168 61.0 5e-42 MVTFKGNSVSLSGKTLNVGDSAPKVELVAGDLSVKSVGGASGKFQIINVVPSLDTGVCAT QTRKFNKKAASLSNAEVFVVSLDLPFAQGRFCSTEGIKNVVALSDFRNKAFGEAYGVVLA GSPLEGLLTRAVFVVNPEGKIVYKEIVSEVTSEPDYEAALAAVK >gi|197325096|gb|DS990370.1| GENE 207 202313 - 203326 901 337 aa, chain - ## HITS:1 COG:jhp0740_1 KEGG:ns NR:ns ## COG: jhp0740_1 COG0108 # Protein_GI_number: 15611807 # Func_class: H Coenzyme transport and metabolism # Function: 3,4-dihydroxy-2-butanone 4-phosphate synthase # Organism: Helicobacter pylori J99 # 6 201 5 200 200 330 80.0 3e-90 MEAILRVEEAIKAIKNGEMIIIMDDEDRENEGDLVMAGIFSTPEKINFMAQEARGLICVS ITKEIANALDLPPMVSYNSSNHETAFTISIDAKEAKTGISAYERDLTINLMCRANAKPDD FVRPGHIFPLIAKEGGVLERTGHTEASVDICKLAGLKPISVICEIMREDGLMARRGDKFL SEFSAKHNLKILYVSDLIQYRLSFENLIAILSKESCQFLQAKTEKIKIKDHLNRIHTIFK FGNPLQNPLVKFHTITQDLMLLEDTEKFNGLMNAIDKLKSEGGYLIFLATEANKDIKGLG IGAQILKALEIRDFKLLTTSKFDENDCSMLSGFDLAS >gi|197325096|gb|DS990370.1| GENE 208 203719 - 204219 522 166 aa, chain - ## HITS:1 COG:no KEGG:WS0169 NR:ns ## KEGG: WS0169 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 80 166 2 92 92 62 48.0 8e-09 MESYESLRLKESDKIQKTNFWDRFKKENNQELGTKEGFKESSQNTQNTLEEDPYRGNSPI NETSSKELSTLMDQTSLNPQEKEEILQIDLEKREISFKMVCISIGIMLFVLLLFIPKIYI RNNIYYTSRNITQLQTQLDSLTEENKQIKKQLEDIKFRNLTHELDF >gi|197325096|gb|DS990370.1| GENE 209 204228 - 205163 771 311 aa, chain - ## HITS:1 COG:HP0707 KEGG:ns NR:ns ## COG: HP0707 COG0275 # Protein_GI_number: 15645330 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Helicobacter pylori 26695 # 5 309 8 306 308 292 51.0 7e-79 MKIPHISVLKQEVLEAFNTEIINQKGGILIDCTLGFGGHSLALLEKYPKLKVIGIDQDDE AIALAKKRLEPFCDRFSIEYGCFSGVLKQILQRENNIVGILADIGVSSMQFDSKERGFCF DSEFLDMRMDQSQNFTAKDIVNSYPLTELERIFRDFGEIREYKKLAYCIVELRKKEKITS AKMLSQFIAKHFKHPKIHPATLAFQALRIEVNNELGELESMLKIFDSQTMQDCSRLCLIS FHSLEDRIIKNKFKQWENPCICPPQALKCECGRNHQKGRSLYKKPIIPKEEEIKDNPRAR SSKMRVFEFLH >gi|197325096|gb|DS990370.1| GENE 210 205160 - 206428 1737 422 aa, chain - ## HITS:1 COG:HP0648 KEGG:ns NR:ns ## COG: HP0648 COG0766 # Protein_GI_number: 15645272 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Helicobacter pylori 26695 # 1 422 1 421 422 536 65.0 1e-152 MDFLRIEGQVNLQGSIQISGAKNSALPLIALSLLSKEKVTLSNLPNVVDIKTFFSLLNML GCEIIPLDKHTTSIIVKTLNNTKANYDIVRKMRASILVLGPLLGRFGCCEVSLPGGCAIG ARPVDLHIKALQKMGAEIRLQGGYIIAEAKEGLKGSVINFDKITVTGTENILMAAAMAKG KTQIINAAKEPEVIQLCEVLKASGVEINGIGSDEIEIYGTNREPLKFPTNIEVIPDRIEA GTYLCAGAITNSQITLHRLNPTHLTAVLSKLEEIGFTMKIDGDSVTIYPAKNRQSFEIST TEYPGFPTDMQAQFMALATQCEGSSIIQERLFENRFMHVSELQRMGANIKLKGNTATIQG KSELFGADVMATDLRASSALVLAALVAKGESHIHRIYHLDRGYEDLEAKLAGLGAKISRE KE >gi|197325096|gb|DS990370.1| GENE 211 206438 - 206884 328 148 aa, chain - ## HITS:1 COG:no KEGG:WS0341 NR:ns ## KEGG: WS0341 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 148 4 152 155 96 36.0 4e-19 MYSFQFYLFIWVALLFAILPFVLLSSAFLILGKIQAYLESQKSRDNLLKNIQYLISTLQN NPSKEELDEVLDAFRKNFLNFDSLKKESKDYKDRMDFISALAWCSAVDIDSVARYREEFV KANPNFKKEIETLIGAALKNRESSEKKK >gi|197325096|gb|DS990370.1| GENE 212 206884 - 207711 1100 275 aa, chain - ## HITS:1 COG:Cj1536c KEGG:ns NR:ns ## COG: Cj1536c COG1210 # Protein_GI_number: 15792844 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Campylobacter jejuni # 1 271 1 271 274 399 70.0 1e-111 MIKKCLFPAAGYGTRFLPATKAIPKEMLPILNKPLIQYGVEEAIEAGITNMAIVTGRGKR SLEDHFDISYELEHQIQGTSKEGYLKDIRHLLNTCTFSYTRQMEMKGLGHAILVGENLIG KEPFGVILSDDLCDNEGGIGVLSQMCEIYKKYKCSIVAVEEVAKEEVSKYGVISGREVDK GVFMVDNMIEKPSIEEAPSNLAIIGRYILTPDIFEILKHTKPGKNGEIQITDALMEQCKK GMVLAYKFQGVRYDCGSVDGFVRATNVFYEKYQGK >gi|197325096|gb|DS990370.1| GENE 213 207724 - 208500 575 258 aa, chain - ## HITS:1 COG:NMA1415 KEGG:ns NR:ns ## COG: NMA1415 COG2607 # Protein_GI_number: 15794327 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Neisseria meningitidis Z2491 # 20 246 44 273 287 171 41.0 1e-42 MNQFHWDCERYYAAIYRSSGYLHQVCELENYEWSDFYNLQKEIELLCANTESFLFKGRGV NVLLWGARGCGKSSLIKALLPKYAKEGLRILQIFKQDLEILPEILDFLRTKTYKFIIFCD DLSFNESDQEYKNLKTILEGSIERFPQNIRFYVTSNRRHLMPEFHNENEIFGFEGNEDKI ALFERFPLCIGFYTHSNQEYLEVLQGYFEKLPLDLQNSDNWEKIRQKALIFATKRGSKNP RIAAQFFKLYQSGLIDLI >gi|197325096|gb|DS990370.1| GENE 214 208500 - 210740 1303 746 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 11 716 13 799 815 506 38 1e-142 MIEISKELNYILQAAQSRAKHLGHEYLTLEHIFHSLLDSQTVIKAIQECGGNIKALKSQI ERYLTHFLQSHPDASELPIETLAVTRVIEIMVSHVKGAQRKEAQVGDLLAAILEEDKAFC TQLLKAQGITRLNILEYITENQDTQQAQKFEKDENKQESILEKYCINLTQEAKEGKIDPI IGRDKEIERCLEVLLRRKKNNPLLVGEPGVGKTAIAEGLAIVLNQENNPLFGNEIFMLNM GALVAGTKYRGDFEKRIKALSEEVLERKNVILFIDEIHMLIGAGATNSGSMDASNLLKPM LGSGKLRCIGASTYAEYRNFLDKDKAFSRRFAKIDVDEPSQEEAVLILQGVKKYYEKHHN VIYPLETLRLAVELSSRYLHDRFLPDKAIDVIDEVGAAYKLASKSGKVSLSSIKQMVAKM AKIPEIEATKDDKNLLKNLQKHLQSRIFGQDLAIKEIVTALKRNRAGLGAPNKPIGSFLF SGPSGVGKTELAKEIAKALGINFERIDMSEYMEKYSSSGLIGAPAGYVGYDKGGILTEMI KKNPHTLLLLDEIEKAHPDVLNIFLQVMDNAKLTDNNGESADFSSVILIMTSNVGSKEAP TLGFTQDSVAKFNSAIKDNFTPEFRNRLDAIVAFNPLSETEILKIVEKNINDLNKQIAPK NIHILLDKSAKEQLAKLGYNPELGARPLGLVIQEKIKNPLSDLMLFGELEKGGEVIFSYN KKSDSFSYKTKQNSPSNDKIKTKRSH >gi|197325096|gb|DS990370.1| GENE 215 210956 - 211135 131 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253828028|ref|ZP_04870913.1| ## NR: gi|253828028|ref|ZP_04870913.1| ATP-dependent Clp protease adaptor protein ClpS [Helicobacter canadensis MIT 98-5491] ATP-dependent Clp protease adaptor protein ClpS [Helicobacter canadensis MIT 98-5491] # 1 59 1 59 101 103 98.0 5e-21 MPKQNQIENATETLEKLQEPIRYKVILLNDDYTTQDFVIEILQKVFHKGFEESLNLMLR >gi|197325096|gb|DS990370.1| GENE 216 211225 - 211782 615 185 aa, chain - ## HITS:1 COG:AF2335 KEGG:ns NR:ns ## COG: AF2335 COG1335 # Protein_GI_number: 11499916 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Archaeoglobus fulgidus # 19 184 3 169 170 85 30.0 4e-17 MPSYALKQKASLAKDGCVFVCVDIQERLFGVMQNQEKLLKNANNLLKCADIFHQNALVLE QYPKGLGKAIVNHSSQVIQKNSFSAFGEETFCQMLERYNAQTLILFGIESHICVRETALD SLERDFEVFVAEDACSARDSHNHILAMQELRDLGVRITSTESILFSFLLHSREEDFKAIS ALIKE >gi|197325096|gb|DS990370.1| GENE 217 211793 - 212755 1231 320 aa, chain - ## HITS:1 COG:L142355 KEGG:ns NR:ns ## COG: L142355 COG1242 # Protein_GI_number: 15674248 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductase # Organism: Lactococcus lactis # 2 302 3 282 313 226 39.0 5e-59 MKQMLTFGRYCKRRFGQRVRKIPIALAGFTCPNIDGSVARGGCIFCKNESFSPTLEHEPK VPLKINPKMQDNPLLPMQLKQLHSQYQWQTDFHKNKFGVGKYLIYFQSFTNTYAPFDTLQ KLYTEALNLPNVVGMSIGTRTDSVNLELLDYLAHLQETRKQEIWIEYGIQSVYDETLKFI NRGHTTEGMEYWIKETKQRGLKVCSHIIYGLPKETKEMMLNSLKQVLDWGSDGIKVHPLY IIEKTILAQMYAKGEYKPITLNEYIDLIVETLKMIPQNVVIHRVSAGVRNDTLIAPKWCF DKNIQMRAIRDALRAAGIEY >gi|197325096|gb|DS990370.1| GENE 218 212762 - 214132 1351 456 aa, chain - ## HITS:1 COG:Cj0196c KEGG:ns NR:ns ## COG: Cj0196c COG0034 # Protein_GI_number: 15791583 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Campylobacter jejuni # 10 456 2 445 445 510 55.0 1e-144 MEERSWNEECAVVGVYNAPNAASIAYYSLFSMQHRGQEATGIASSNGEKITTIKDHGLVT DVFCDETLKKLKGFSAVGHNRYATAGADSLSDAQPIFARYDLGEVAIVHNGNLTNAEKIR NDLIKEGAIFQSHMDTENLIHLIAKAKEENLVDRIKEAVLKLEGAFCFIILSRKKMFVIR DRNGFRPLSLGQIQNNDGSIGYIVASETCAFDLVNAKYLRDVEPGEMLVLSQKGVESHHI MPKNPYPCVFEYVYFARPDSHVFGRLVYNIRKAMGVELARENPIDADIVIPVPDSGVAAA LGYSQESGIPFELGIIRNHYVGRTFIEPTQQIRELKVKLKLNPIRELIENKRIIVIDDSV VRGTTSKQIVKILRDCGAKEIHMKISSPPTISPCFYGVDTPNKDELISATMSNEEVCKFI KADSLSFLSLEGLKRSIGAKDYQFCQACFDNNYIVR >gi|197325096|gb|DS990370.1| GENE 219 214142 - 214909 764 255 aa, chain - ## HITS:1 COG:Cj0197c KEGG:ns NR:ns ## COG: Cj0197c COG0289 # Protein_GI_number: 15791584 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Campylobacter jejuni # 1 255 1 242 242 258 52.0 1e-68 MLKIGVFGAGGRIGKLIVELAKESDVIKLESVYARKELDFSIEPGTLITSDLKIFLESCE VVIDFTTPQGTEQLLEVALKHPRPIVIGTTGLESHHENLIKEAAKKMPILYASNMSLGVA MLNKAIRLVASALRDFDIEIVETHHHFKKDSPSGTALRLAKSCAEARNLDLDKVRISGRN GNIGERTKDEIGVMALRGGDVAGIHNVGFYGEGEYLEFIHTATSRLTFAKGAIKAALWLK NQPNSLYSIEDSLGL >gi|197325096|gb|DS990370.1| GENE 220 214920 - 215858 557 312 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 1 310 1 305 306 219 38 1e-55 MLDLAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSSEMENYPGVSEVKSGFD FMMPWQEQCFRFGLKHEMKEVLRVKKIGEHFSIIFSDGSEEQAKAVIVATGGSPKRSGVK GEDTFWGKGVSSCATCDGFFYKDKEVAVLGGGDTAVEESIYLAKICSKVTLIHRRDAFRA SPITLERAKNEPKIEFLTPYGIDEICGDDSGVTGLKLKNLQDGSAKEINIAGIFVLIGYN VNNSVFMQEDGTPLCEINEYGQAVVNLKMETNIPGLFAAGDLRKDASKQVVCAAADGATA ALGAIEYIEHHK >gi|197325096|gb|DS990370.1| GENE 221 215861 - 216343 404 160 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224419097|ref|ZP_03657103.1| ## NR: gi|224419097|ref|ZP_03657103.1| hypothetical protein HcanM9_07477 [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 160 1 160 160 280 100.0 3e-74 MKKCCPGFPIAFIVVFVVGAFLYYYYSFSAVAEIDFKKDSFYATSNQKMFLFEPKDKEYK MCFFSSYVPKWQEALELESKKTKLGVLAVDLYQQGESYASNVINLKVSSEVMLSLVYKFE LKAIPKCFIIKQDKENLILYRYLKKNGIYKILNFKQTQGE >gi|197325096|gb|DS990370.1| GENE 222 216372 - 216689 567 105 aa, chain - ## HITS:1 COG:HP0824 KEGG:ns NR:ns ## COG: HP0824 COG0526 # Protein_GI_number: 15645443 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Helicobacter pylori 26695 # 1 105 1 105 106 158 64.0 3e-39 MAGYIELTEQNFDETIKDGVVMVDFWAPWCGPCRMIAPVIEKLAADYQGKAKICKVNTDE QQELASKFGIRSIPTIFFYKNGEKVDEMIGAATEAGFKDKLDKLL >gi|197325096|gb|DS990370.1| GENE 223 216801 - 218099 1581 432 aa, chain - ## HITS:1 COG:HP1420 KEGG:ns NR:ns ## COG: HP1420 COG1157 # Protein_GI_number: 15646029 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway ATPase # Organism: Helicobacter pylori 26695 # 1 432 1 434 434 582 68.0 1e-166 MSLANLRERLNHLNLSPTFGLITKVEQGFLSANGLSPSLGDIVRIVSENSNTIGMVTTLE GGSFKITPFSFVEGTKVGDKVYLNTKGLQIPVGLELLGRVINPLGEPIDGKGDLRAEGVM PIIRQPIAAMKRGMIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVRGAQ AKIKVIALIGERGREVPEFVEKNLGGDLTNTVLIVATSDDSPLMRKYGAFAAMSVAEYFK AKGEDVLFMMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLTLLPQLMERAGKEEGKGSI TAYFTVLVEGDDMSDPIADQSRSILDGHIVLDRSLTDFGIYPPINILNSASRLMNDIAQK EHILAARKFRRLYSILKENEVLIRIGAYQAGSDKEMDEAIAKKEDMEDYLRQSYDEVWDY QESTKKLIELMK >gi|197325096|gb|DS990370.1| GENE 224 218193 - 219083 1032 296 aa, chain + ## HITS:1 COG:HP0961 KEGG:ns NR:ns ## COG: HP0961 COG0240 # Protein_GI_number: 15645577 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Helicobacter pylori 26695 # 3 294 2 311 312 326 55.0 3e-89 MAKISVFGGGAWGKALHFAFGEKNDSYIISRKKLNSPYQISQTQAQNSDFFVVAICSSAL ELWLKDSPLPQESKILVASKGIANGLFVSDIFSKFYPKAQLSFLAGPSFAKEVAQSLPCA LNVHSNNLQIAQEWLDLFPNFIKPYTNDDIIGGEIGGAYKNVIAIASGICEGMRLGNNAR ASLIARGLVEMTRFGKFFGAKEETFLGLSGAGDLFLTANSTLSRNFRVGLALAQNKQLQE ILDNLGEVAEGVQTSKEIYALAQKNEIYTPIAKEVALIMEGKDPKSSLMDLMKRMN >gi|197325096|gb|DS990370.1| GENE 225 219080 - 220087 1018 335 aa, chain - ## HITS:1 COG:Cj0029 KEGG:ns NR:ns ## COG: Cj0029 COG0252 # Protein_GI_number: 15791428 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Campylobacter jejuni # 7 335 5 331 331 367 60.0 1e-101 MSLNTFKPNIIILATGGTIAGEAKTKLQTTDYKSGSLSVELLIKAIPQLQCIANIHTKQI ANIDSADMTDLIWLELAKSINSLLEDSKIDGIVVTHGTDTMEETAYFLNLVIKSDKPVVL TGAMRPATAMSADGPKNLYNAISLASDKNAKGKGVMIVMNDKIHSAREATKMHTLNVESF QSPNSGEMGYIVDGEVFLKAINLKSHTLQTPFSIENLDSLPKVDIVYTYSNDGSKVAIEA FLKAGSKGLVIAGSGAGSIHKNQKEYLIDLLKEKELKVVKSSRVGSGMVLLSEEENAQGF IAASDLNPQKARILLILSLTKTSDSRKIAEYFERF >gi|197325096|gb|DS990370.1| GENE 226 220312 - 221604 1683 430 aa, chain + ## HITS:1 COG:Cj1727c KEGG:ns NR:ns ## COG: Cj1727c COG2873 # Protein_GI_number: 15793030 # Func_class: E Amino acid transport and metabolism # Function: O-acetylhomoserine sulfhydrylase # Organism: Campylobacter jejuni # 8 429 2 422 423 602 71.0 1e-172 MPNLTHNNFSQETLALHAGYTYDSQRTLSVPIYQNTAYSFESLQQAAARFGLQELGNIYS RLTNPTTDVLGARLAAIEGGAFGVPTASGSAAIFYTLVNLAQNGDNIAFSNKIYGGTQTL LVHTLKRFGIEARIFDIDDIDNTLEKVIDSKTKAIFFESLSNPQIAIADTEKITKIAKAH GIVSVCDNTVATAFLHKPFDFGVDVAVYSLSKYVNGQGSALGGAVIERNGLNELIKDNPR YPAFNTPDESYHGLVYASLPLPIFSIRLITEWLRNIGATLSPQNAWIILQGLETLELRIQ KHSANALEVAKFLESHPKVKSVNYPALSSNPYHHLVSKYFANNQCSGLISFESESFEAAQ KICNALELFAIVANIGDSKSLIIHPASTTHSQLSQKELDLAGITPATIRLSIGLESPLDL ISDLKQALEK >gi|197325096|gb|DS990370.1| GENE 227 221615 - 222649 978 344 aa, chain + ## HITS:1 COG:yeeE KEGG:ns NR:ns ## COG: yeeE COG2391 # Protein_GI_number: 16129954 # Func_class: R General function prediction only # Function: Predicted transporter component # Organism: Escherichia coli K12 # 1 338 5 342 352 337 52.0 3e-92 MLSGIIVGLLLGFVLQRGRFCVVGAYRDVFLSKKFTIFIALFIVIVVQSIGVWALNSFGY ISIKPQEFYWLSTIIGGVIFGFGMVIAGGCATGTWYRAGEGLIGSIAALFFYALSASIVK YGALLPLQNNLQAFKISDGTIYQSLGISPWILVIALGIIVSFFVFKELRKPRLKIARLKP KKTGISHLLFEKSWHPFVTALLVAIIAILAWPLSSLSGRNYGLGITTPSANLIQYLTTGN LDFIDWGAFLVLGIALGSFLAAKFSGEFKFRLPDKKTLAYSSIGGILMGIGASLAGGCTI GNGLVETALFSYKGWVATIFFLLGAYIATFFTIILPSRSVAQKS >gi|197325096|gb|DS990370.1| GENE 228 222659 - 222880 456 73 aa, chain + ## HITS:1 COG:SA1849 KEGG:ns NR:ns ## COG: SA1849 COG0425 # Protein_GI_number: 15927619 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Staphylococcus aureus N315 # 4 72 5 73 74 85 57.0 2e-17 MAILDTRGKVCPFPLVDAKNFIQTLQSGEELEILFDCTQATETIPQWAAEEGHEVINFEV LGDAEWTIKLIKK >gi|197325096|gb|DS990370.1| GENE 229 222890 - 223780 975 296 aa, chain + ## HITS:1 COG:Cj1726c KEGG:ns NR:ns ## COG: Cj1726c COG1897 # Protein_GI_number: 15793029 # Func_class: E Amino acid transport and metabolism # Function: Homoserine trans-succinylase # Organism: Campylobacter jejuni # 1 294 1 293 293 346 58.0 3e-95 MPLIIPEDIPAFRALKEYAFIMGQKRAKSQDIRPLEVLIINLMPIKIETENQILALLANS PLQVNITLLSTATYIGKNTPKSHLDKFYVNFDSIKHKNFDGAIVTGAPIEHLEFEQVKYW RELVAIMDYLKHNCTSTLYLCWGAMAGLYHFHKIQKIPLKEKLFGVFEHFWVEKDLLLNG LDEIVKIPHSRHSGINESQVATNPNLKILLQGKESGITALKDNKDFFILGHPEYSKNTLE SEYQRDLNKGLPIHKPFNYFDSQENPILSWRSSASVMFSNWLNFAVYQDTPFILES >gi|197325096|gb|DS990370.1| GENE 230 223777 - 224247 354 156 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224419106|ref|ZP_03657112.1| ## NR: gi|224419106|ref|ZP_03657112.1| hypothetical protein HcanM9_07522 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1403 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1403 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 156 1 156 156 258 100.0 1e-67 MKISSLIASLLVSACLVFLLFCIFWAAIFVNYINYYGIREFFNPFFGNVFNPFVFILMVL GFGIAFVIPLLGGIARIFYVVLLFLCLSLFVPTLGNKIGKIILSSNKVIKIDGVESKVYS LYENRFYIFYLKDQLNGKETLEERKKKIAYYEKPKP >gi|197325096|gb|DS990370.1| GENE 231 224249 - 224710 281 153 aa, chain - ## HITS:1 COG:no KEGG:NAMH_1680 NR:ns ## KEGG: NAMH_1680 # Name: not_defined # Def: hypothetical protein # Organism: N.profundicola # Pathway: not_defined # 1 153 1 146 146 113 43.0 3e-24 MFEESVFLAQSDTTTGLLCLDSKKLNLKKGRQSNQRVIVTLGSFQKLGELVRIPQKYKKM IRNSQKTTFIYRGKNSLVNHSLGIRVVRDSLHNEFLRFFPYLYSTSANPHKQNFNLEFAL KSADVWIMDKRGFMPSKASRIFKVGNNNLRIVR >gi|197325096|gb|DS990370.1| GENE 232 224714 - 226525 2648 603 aa, chain - ## HITS:1 COG:Cj0279 KEGG:ns NR:ns ## COG: Cj0279 COG0458 # Protein_GI_number: 15791649 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Campylobacter jejuni # 1 601 491 1087 1089 710 60.0 0 MLAFLINKNEGLELREEDIYALRQKLHVQLQYNEVDTCAAEFSTQTAYLYGTTPFNAQSF VDYNPQDNPDQNAQKKVLIIGGGPNRIGQGIEFDYCCVHASFALKDMGIQSIMYNCNPET VSTDYDTSDVLYFEPITFECVRSVIEREKPDGVIVHFGGQTPLKLAKKLTTIGAKIIGTS AKTIDIAEDREKFAKFVEENGLLQPKNGTAFTKEEAIEIAQNIGFPVLVRPSYVLGGRAM RIVYNVAELQNYMSEAVSVSEDSPVLIDKFLNNALELDVDVICDGKDVYIAGIMQHIEEA GIHSGDSACSIPTISISKEKIKEIEETTAKIARNLGVVGLMNTQYAIFEETLYLIEVNPR ASRTVPFVSKATGIPLAKVATHVMINKDLKAALEFYDEHKKVEFKDGLYKPKKSKHIAVK ESVFPFSKLSGAVMVLGPEMRSTGEVMGISESFGVSFAKSQMASKNPIPTKGKVFISLRS FDKPQAGDLARELEGLGFEICATKGTSQEISKKGIACEEALKISEGRPNIGDMLANGEIA LAINTSDEASSKDDTDKIRTQVLRNNVPYFTTIEAARVAISAISEIKRINPNIAKPLQDY LSE >gi|197325096|gb|DS990370.1| GENE 233 226751 - 228088 1762 445 aa, chain - ## HITS:1 COG:jhp0853 KEGG:ns NR:ns ## COG: jhp0853 COG0458 # Protein_GI_number: 15611920 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Helicobacter pylori J99 # 1 443 1 443 1085 699 78.0 0 MPKRNDIKTILLIGSGPIVIGQACEFDYSGTQAAKTLKKLGYRVVLINSNPATIMTDPNL ADRTYIEPITEEVIANIIKQEKVDAILPTMGGQTALNVAMSMYEKGMLEGVKFLGANPSA IKKGEDRQAFKEAMLKIGMDLPKSRYAYTIEEALEAAKEIGFPLIIRASFTLAGGGSGVA YNIDEFKTLAQNGLDTSPISEILIEESLLGWKEFEMEVIRDKSDNCIIVCSIENLDPMGV HTGDSITIAPALTLTDKEYQRMRDASFKILREIGVDTGGSNVQFAINPKTGRMTVIEMNP RVSRSSALASKATGYPIAKIATLLAVGYTLDEIKNDITGTPASFEPSIDYIVTKIPRFTF EKFPQADSTLTTSMKSIGEVMAIGVSFKESLQKALCSLETGIFGFNPISNDLSEIQREVR RPNAHRLLYIAEALRNDISVEELAS >gi|197325096|gb|DS990370.1| GENE 234 228172 - 228792 656 206 aa, chain - ## HITS:1 COG:HP0321 KEGG:ns NR:ns ## COG: HP0321 COG0194 # Protein_GI_number: 15644949 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Helicobacter pylori 26695 # 10 206 7 202 206 201 51.0 8e-52 MEGIKLKGAILILSGPSGAGKSSLYKALAKEFPKHYFSISSTTREKRKGEEEGVHYHFIS KDEFQKNIQEDNFLEWALVHGNYYGTSKMPILEALEQGKLVVFDVDVQGQENIKKAFPNH TTSVFITTNNKKILEERLGGRGSDENEIIKKRLENAVGEVKKLNKFDYLIINENLEESAK TLVCIAKVAFCKASLYPIDLVMQKWE >gi|197325096|gb|DS990370.1| GENE 235 228793 - 229014 349 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253828047|ref|ZP_04870932.1| ## NR: gi|253828047|ref|ZP_04870932.1| hypothetical protein HCAN_1407 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1407 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 73 18 90 90 105 100.0 8e-22 MSEALGEPIAKEPNIAPIVPKEEVKEASLPSNVQINSLESLIGALQTLQTQSLKELLSGA TINISIQFPKKED >gi|197325096|gb|DS990370.1| GENE 236 229290 - 230201 1256 303 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253828048|ref|ZP_04870933.1| ## NR: gi|253828048|ref|ZP_04870933.1| hypothetical protein HCAN_1408 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1408 [Helicobacter canadensis MIT 98-5491] # 1 300 1 300 391 321 99.0 5e-86 MKIYLVNKNPMITKLASLSISKIGLDMVETQGIDLTLQADVLLLDDECYQQEELEQYKQA NTEVKTILLYAKSTQRVEGFDAYVQKPFLPTDLVKTLSEVCGIETFVEAKEEEKVDEAEK QDSDLLDLGDLGLEVDPSKSLSPKVLDESDIEEVKQLFTEESDDENKNFEEAIGLDQKQD ISAEEIQKELEEAENQQDEVELSQEDLEKSLEDLEFDKDQNEELEELEKNNESKNTEVVE TAQDEQEIDFEALLNDMQESNDEDKELVNNEVSKEAEGEFETLSLEENELPQMQVDSIEM LAS >gi|197325096|gb|DS990370.1| GENE 237 230303 - 230836 539 177 aa, chain + ## HITS:1 COG:jhp0306 KEGG:ns NR:ns ## COG: jhp0306 COG1502 # Protein_GI_number: 15611375 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Helicobacter pylori J99 # 23 174 26 177 180 160 51.0 1e-39 MFSKLFYLFCFCFMLSLPSFAQSLYFMPKEQNQAIKQLINTIKSAQNTLDIAIYSFTNRE ISKAIRDTTKKGVKVRIIYDKKSNQKNNHSTIGYLAKLKNIQTCFLEGKRSRNGKYNGLM HSKMAIIDDKHLILGSANWSKSAFETNYETLVILDNKEFIQKAQKEFETMFEECEKY >gi|197325096|gb|DS990370.1| GENE 238 230905 - 231696 962 263 aa, chain - ## HITS:1 COG:Cj0644 KEGG:ns NR:ns ## COG: Cj0644 COG0084 # Protein_GI_number: 15792004 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Campylobacter jejuni # 1 261 11 267 271 289 55.0 4e-78 MQLCDTHCHLDDKRFEEDFEAILDRARNAGITRFIIPAAHPEDLSRARELAHKYEEIYFA SGLHPNYAYLYDEAFLEPFLEDEKCIAVGECGLDYYCLEEALAQSKLESIEKLKQIQKEV FIAQIQLAIAYKKPLIVHIRDASADSLEILQTYCDELVGGVLHCFNADFQLLSLAKKGFY YGIGGVLTFKNARKLVEILPKIPVESLLLETDAPYLTPHPHRGKRNEPSYIPLVLEKMSE ILNVSKENLVGLINQNTKMLFGI >gi|197325096|gb|DS990370.1| GENE 239 231771 - 232385 769 204 aa, chain + ## HITS:1 COG:Cj1218c KEGG:ns NR:ns ## COG: Cj1218c COG0307 # Protein_GI_number: 15792542 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase alpha chain # Organism: Campylobacter jejuni # 1 200 1 199 203 218 52.0 7e-57 MFTGLVREFGKVLGFQQNILTLKAKHRPKVGDSIAVNGACLTAIEIFNNGFSVELSEETQ SHIALESYQDLVHIEPALRLQDRLDGHLVQGHIDGIGEIIKIIPHSIGIDFFITANRDIL KLCIPKGSIAINGISLTINEVLDDSLRLTLIPHTIQNTLFGQYKVGTKVNIETDMFARMV QHFLSNKKDSNLTWEKVDRILGSY >gi|197325096|gb|DS990370.1| GENE 240 232387 - 232668 342 93 aa, chain + ## HITS:1 COG:HP1575 KEGG:ns NR:ns ## COG: HP1575 COG2257 # Protein_GI_number: 15646182 # Func_class: S Function unknown # Function: Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB # Organism: Helicobacter pylori 26695 # 8 91 6 89 90 89 54.0 2e-18 MPLPLSQKAVALAYEQNKHRAPKVLAKGEGLIAQKIIEKAKEYDIPLFQSKALVDSLIHL EIDEEIPPDLYKAVVEVFIWLYKTEQKTQMSHS >gi|197325096|gb|DS990370.1| GENE 241 232702 - 233481 948 259 aa, chain - ## HITS:1 COG:DR0470 KEGG:ns NR:ns ## COG: DR0470 COG1387 # Protein_GI_number: 15805497 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Histidinol phosphatase and related hydrolases of the PHP family # Organism: Deinococcus radiodurans # 4 256 6 258 260 164 34.0 1e-40 MRVDLHNHTSLCKHASGTMEEYIQKAIEEKIDIFGFSCHNPMEFDEQYRMDFAELPFYLQ QIEELKAKYASQISIKMALEIDFLPHLLDERIFNLPLDYRIGAVHFLGNWGFDNPEFIRE YAKRDINACWEQYFEAAKQMAMSGEFDIVAHMDLLKIFNYRPTKDLRKTIELTLKAIKKA NMAVEINAAGLRKEVKEQYPSREILEMCYGLDIPIVFSSDAHAIEQIGFARETLEALARE VGYTKCATYTARDRELVEF >gi|197325096|gb|DS990370.1| GENE 242 233482 - 233958 360 158 aa, chain - ## HITS:1 COG:aq_2114_1 KEGG:ns NR:ns ## COG: aq_2114_1 COG2050 # Protein_GI_number: 15607066 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Aquifex aeolicus # 44 135 25 116 129 80 41.0 1e-15 MEDEFANEDGDFLNQADQESVVQRVCQNIDSSNGVIKELKNRQASVMLETTSKMILDKSG LVHSGNLYSSAAYSALLAVNNPNAIIIGVEMKFLAPIELGNEVLFKAQCLQEDTKKREVK VEGFVLDIKIFDAMFSIAVFDKHILNLHITKEMEKRVE >gi|197325096|gb|DS990370.1| GENE 243 234316 - 235203 794 295 aa, chain + ## HITS:1 COG:Cj1125c KEGG:ns NR:ns ## COG: Cj1125c COG0438 # Protein_GI_number: 15792450 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Campylobacter jejuni # 3 291 91 376 376 175 39.0 8e-44 MLKPNIYGSFAAKIAKIPYVINSLTGLGSFYIQKSPKTFLLKILIERLNFFAFKIAKKVL FQNQDDLDLYVKKGLVPREKTILIKGSGIDTEFFSPLPKNQALLQSLKIPQDSLVVLMIA RAILHKGIKEYYAAANLAKEANLKLHFLYVGGIDTGNIAPIDKEFLENQKQVHYLGERQD IKELIGICDIFVLPSYREGIPRTLLEAGSMAKPIITTNAVGCKEVVSDGYNGFLVPIGDS QILFEKLLQLSQSESLRKEFGKNSRKKICEEFGVESIVKSYLQLYKEVKNVSTFH >gi|197325096|gb|DS990370.1| GENE 244 235184 - 235789 675 201 aa, chain + ## HITS:1 COG:Cj1124c KEGG:ns NR:ns ## COG: Cj1124c COG2148 # Protein_GI_number: 15792449 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Campylobacter jejuni # 1 199 1 198 200 265 70.0 5e-71 MYPHFIKPILDFSLALILIILFSPIILIVALLIRLKLGSPIFFTQERPGLKGKIFKIYKF RTMSDQRDSNGQLLSDELRLKGFGKFIRKSSLDELPQLFNVLKGEMSFVGPRPLLVEYLK LYNKEQAKRHEVKPGITGWAQVNGRNAISWEEKFKLDVYYVKHISFWLDLKILYLTFFKV LKRKDINSNTNVTMEKFKGNE >gi|197325096|gb|DS990370.1| GENE 245 235992 - 238136 1962 714 aa, chain + ## HITS:1 COG:no KEGG:WS1305 NR:ns ## KEGG: WS1305 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 706 1 707 713 519 41.0 1e-145 MFPLQSKLRLIGSVLGIATDEDYIICADNFYNIVTFSIQDKVINQTLQLSKDTEPLHPFS KSVAISHKNGRVVTGFTSTSKGIVLKTKPKITPIAVLTWQKLEISKIAFSYDDNYLATGG EDGRVLIYMGENYHLLLSLPPFPDYISSIAFSECGTLIFSACFGKTAMVFSILKNTKIID FKTDFVVEDAFFYDNNTKLFCITKNGIFTYDIYKQEYLCQNALQNSWLTTCQKLPGEEFA VIGGKYNPLRLARISDNAIIDTIPSEYTGATSLFLDKNLLYIGYSNGAIEIAQIDLAKEE MLEYLANDDLQSCLKLIKEKNIFLQTLPQYKEKLDSLWQDKLLEAIDLLAKDRLQEAQSL IEPFMYDNSKKEEFDYYWRQKASVARFMDLIEEKNYTEAYQLIKQYPYLENTMAYTQLEE LWEKTFELAKKLLAEDAQLNIHKVKELLNPFANVPIKKAVITTLLKNVDKFLQADKEFKA KNFVEYFKICEKFPFLQATRSYKNALLVGNQIIQHISTLENQNNYQKALEVCKLLNAMFP FKSIANEKSKNIQLKQEFSQYCASKQLSKAFEMAEEHFELHSTLEYKTLYEEFRAKGRIA FGFASNGDGKGVIDTLKEYLNIKCWQDKIASILKIAYLNEFLQNAHQNSQNINWKESFQY YIERYGKDEELKKVATEMGLENTLESISQEGNPQGYLNVSLVESLLCIDEQPLN >gi|197325096|gb|DS990370.1| GENE 246 238152 - 239231 1641 359 aa, chain + ## HITS:1 COG:HP0625 KEGG:ns NR:ns ## COG: HP0625 COG0821 # Protein_GI_number: 15645249 # Func_class: I Lipid transport and metabolism # Function: Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis # Organism: Helicobacter pylori 26695 # 1 352 1 352 359 499 73.0 1e-141 MQIQRYPTKQIQIGEVKIGGDAPISVQSMTFSKTADLQATKDQIDRLQLAGCDIVRVAVS DEEDAKALKTLKSMISLPLVADIHFRYKFALIAAQSVDCIRINPGNIGSKEKIKAVVEAC KERNIPIRIGVNAGSLEKQFEDKYGATPKGMVESALYNIKLLEDFGFTHLKVSLKASDVE RTMAAYRMLRPLVSYPFHLGVTEAGDLESSMIKSSMALGGLLMEGIGDTMRVSITGELEK EIEVARSILRYSGRQKEGITYISCPTCGRLQADLVPILKELKIRMPKIKTPMQLSVMGCA VNALGEAKHADVAIAFGSGDGLIIKKGQIVGKYKESELIDVFIKEVLQTEQEMIQNQGL >gi|197325096|gb|DS990370.1| GENE 247 239236 - 240486 974 416 aa, chain - ## HITS:1 COG:TM0293 KEGG:ns NR:ns ## COG: TM0293 COG0014 # Protein_GI_number: 15643062 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyl phosphate reductase # Organism: Thermotoga maritima # 2 416 3 414 415 351 42.0 2e-96 MEFFETLRKAKEAKVYMRQIPHPIRQEFLRECAKELETQSKMILEANQKDLSKAQEFGLS ASMLERLTLNQERILAMAKSLKEIADLPDPLSRILGGFSNAKGLEIEKVSVPIGVIGIIY ESRPNVTSDTAGLCFKSGNVCILKGGKEAQNSNKAIVEIFHKVLEQFKIPKEAIIFLSCE REDLKVLLSAKEYIDLVIPRGGEGLIKFVSEYSKIPIIKQDKGVCHIFAHSSCKIEQSIA VIVNAKTSRPSVCNACETLLVDSSFAEKFLPQVAKALKQKGTTLKGCKESCRILAQSGIE CEVIPLEAYHTEYNENILNIRIVRGLQGALEHIGKFSSGHSEAILCEDYSIAENFLNQVD SACVYVNASTRFSDGGEFGYGAEVGISTSKLHARGPMGVECLTSYKYKIRGNGQIR >gi|197325096|gb|DS990370.1| GENE 248 240496 - 242592 2329 698 aa, chain - ## HITS:1 COG:Cj1359 KEGG:ns NR:ns ## COG: Cj1359 COG0855 # Protein_GI_number: 15792682 # Func_class: P Inorganic ion transport and metabolism # Function: Polyphosphate kinase # Organism: Campylobacter jejuni # 11 698 8 694 694 773 56.0 0 MSNQLKESSNFINRELSWLRFNTRVLSEAQNSNNPLLERLKFIAIYGTNLDEFYMVRVAG LKRLYAARITESGADRLTPKEQLEEIRGYLKKEKKLLEACYFEIKESLNKLGLCIKTYKE ANKEQQKQLQDYFMNHLYPIVVPIAVDATHPFPHLNNLSYVLALKLQSLDNPNEIKFGMT RISRMLPGFIKLGDTYVLTDSVVAEFTSELFPGFSVLSWTAFRVTRNADMEIEEEEGDDF MALMTEGLKSRRKGEIIRLEIGKTKDEELKRFITNYIPVSSEDIYECELPMNSSILWEIV GNKNFAQLTFPSYTPKILPPLDSNANIFSILDTQDVLLFQPYESFDPVVNFIQSAAKDPD VFSIRMTLYRVGKNSPIVKALIEAAENGKQVTALVELKARFDEENNLHWAKALEGAGAHV IYGVPGLKVHAKIALVIKSIGKELREYVHLSTGNYNTSSAKIYTDISYMTSKKEFTQDAT KFFHNLSGFSHKSRLNTLLAAPLQIKPKIIELIENEAKKGSEGRIILKANSIVDTDVIVA LYKASNAGVKIDLIVRGICCLKPKVAGVSENIRVISIVGKYLEHARIYYFKHAKPQIYFA SADLMPRNLERRVELMTPVFEESLAEKLFGIIRLQSEDNTNAHELQEDGEYKKLVSNGKS INSQKILEDYTNATYTSLKREEEEIKAKRLARRMFRES >gi|197325096|gb|DS990370.1| GENE 249 242752 - 243423 546 223 aa, chain - ## HITS:1 COG:jhp0986 KEGG:ns NR:ns ## COG: jhp0986 COG0325 # Protein_GI_number: 15612051 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Helicobacter pylori J99 # 1 223 1 221 222 242 58.0 3e-64 MQNFKENLINAIEKIEKARIAVDRHRIVRLVAVSKYSTTQEIQALYECGQRAFGENKVQD LTQKANTLESLPLEWHFIGNLQSNKINALLKLKPFMFHSLHSLELAKQLQKRLEQEHIYL KTLLQINSAKESTKSGVMPEEAIEIYYQILEECPNVKLCGLMSIGAHSTDCNLIQKSFET TRALFEKLQNFGANTLSMGMSGDFELAIRCGSNCVRLGSTLFK >gi|197325096|gb|DS990370.1| GENE 250 243433 - 244503 1103 356 aa, chain - ## HITS:1 COG:Cj1068 KEGG:ns NR:ns ## COG: Cj1068 COG0750 # Protein_GI_number: 15792393 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Campylobacter jejuni # 3 350 22 366 368 276 45.0 3e-74 MGFIGSILVLAFLVFFHELGHFLAAKLFGVKVEAFSIGFGSQKLWKKQIGETEYSLRPIP LGGFVQLKGQSDIDPKNRNYEKDSLYGIATYKRLVILAAGSFFNLFLAFLLYIAIALMGQ NELAPVIGKVQEDMPASKAGLQAGDEIVAINGESIKTWDKLNRVVESSVGELEVTFLRDS QVQTAILIPKLGQSKNIFGEEISRPLIGIIAANEIRKISYSPLESIPYAFSQTLQASTLI LQGLEKIILGVVPFSEVGGVVSIVSITKKATELGIVTLLTFTALISVNLGILNLLPIPAL DGGHIVFTLYEMITKKIPSLNAIYRLTLAGWVVLFGLMGLGLYNDVMRIMNGTMPF >gi|197325096|gb|DS990370.1| GENE 251 244507 - 245049 249 180 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 8 172 484 661 904 100 34 7e-20 MNLKSLPNFLTALRICFAILLLAILLYGWELLPPSIHSTWVNYLACLLFCVASITDFFDG FIARNFKVTSLFGEIFDPLADKLLMLAAFIGLLVIDRVNAWAVFLILGREFFITGLRVAA AAKGLRVAASNLGKYKTGLQITAIAFLLMDYSFANATLWLAVIITLYSGYDYAKAYTKTR >gi|197325096|gb|DS990370.1| GENE 252 245049 - 245831 1144 260 aa, chain - ## HITS:1 COG:jhp0409 KEGG:ns NR:ns ## COG: jhp0409 COG1028 # Protein_GI_number: 15611477 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Helicobacter pylori J99 # 4 260 6 262 262 434 84.0 1e-122 MIENMKNKTLVISGATRGIGKAILYRFAQNGVNIAFTYNKNEEEAQKIIADVESKYQIKI KTYPLNVLEPETYKDLFAKIDEDFERVDFFISNAIIYGKSVVGGFAPFMRLKPKGLNNIY TATVLAFVVGAQEAAKRMQKVGGGSIISLSSTGNLVYMPNYAGHGNSKNAVETMVKYAAM ELGEYNIRVNAVSGGPIDTDALKAFPDYAEIKAAVESQSPLGRMGKPEDIAGACLFLCDD SSSAWLTGQTIVIDGGTSFK >gi|197325096|gb|DS990370.1| GENE 253 245828 - 246742 1145 304 aa, chain - ## HITS:1 COG:Cj0806 KEGG:ns NR:ns ## COG: Cj0806 COG0329 # Protein_GI_number: 15792144 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Campylobacter jejuni # 7 302 6 295 298 379 62.0 1e-105 MQVEETIIGAMTALVTPFKNGKLDLETYENLIQRQINYGIDVIVPVGTTGESATLSHQEH RECIEVTLNVAKKNRLNGKNIKVLAGAGSNSTQEAIELAKFAQASGADGILCVTPYYNKP TQEGLYQHYKSVAESISIPLMLYNVPSRTGVSLENTTILRLFRDVKNIYGVKEAGGNLEK VMDLNVNQKDLVIVSGDDVINYPILCCGGKGVISVTSNLLPDKIAALTHSVLSDLNYQKA YILSNELYRINKALFVESNPIPIKAAMYLSGLLKTLEYRLPLVSPSVENLKYLEQILMQY EVVK >gi|197325096|gb|DS990370.1| GENE 254 246750 - 248009 1199 419 aa, chain - ## HITS:1 COG:Cj0805 KEGG:ns NR:ns ## COG: Cj0805 COG0612 # Protein_GI_number: 15792143 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Campylobacter jejuni # 10 419 4 412 416 502 59.0 1e-142 MAQNSVLPKYHKAVLENGLEVYIIPLNNQSNVITTDIFYKVGSRNETMGKSGIAHMLEHL NFKSTKNLKAGEFDKIIKSFGGSTNASTGFDYTHYYIKSSTQNLDKSLELFAELMQNLNL SDEEFQPERNVVAEERLWRTDNNPMGYLYFRLFNTAYVYHPYHWTPIGFMDDIRNWSIED IRAFHKTYYQPKNASIVIAGDIEVNEALKAVRKYFEKIPNTGFEIPKVHTIEPKQEGLRQ ASVHKQTEVEILSIAYKIPPFNHKDQIALSALSEILSGGKSSVLSSVIVDKKRLAAEVYT YNMDLVDEGVFIIMALANSEVSLDKIQKEILAQIELIKQGKLKQSELDKVKINMRASFLY ELESSSGVANLFGSYIARGDLQTLLDFEKNFESLNLEDIIRVANQYFTLNNATIMTLQK >gi|197325096|gb|DS990370.1| GENE 255 248057 - 249112 1229 351 aa, chain - ## HITS:1 COG:Cj0804 KEGG:ns NR:ns ## COG: Cj0804 COG0167 # Protein_GI_number: 15792142 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Campylobacter jejuni # 3 351 2 351 352 371 54.0 1e-102 MFSYHSIRPYLFKSDPEKAHSFVEKIAKLAPKIPGILPLLSQKTCIQNPILAQKIDGMSF YNPIGLAAGFDKNATMIPMLCALGFSYLELGAVTPNPQEGNEKPRLWRHIQEESIQNAMG FNNDGSEVIVNRLSKLYPFAIPLGMNIGKNKITSQEKALDDYLLLAKKFANCTDYLSVNI SSPNTPNLRDLQNEAFIKELFLKLCEIYSKPIYLKIAPDLEIDSILKLTEVAIQNGARGI IATNTTLDYSLVQNPKEKGGLSGRVLTQKSKEILRQIAKVYAKKTTLISVGGISNAQEAF ERIALGANLVQIYSALIFEGPMLVKKINEDLVQILESKGFLNIQDAVGINL >gi|197325096|gb|DS990370.1| GENE 256 249332 - 250981 1513 549 aa, chain - ## HITS:1 COG:Cj1506c KEGG:ns NR:ns ## COG: Cj1506c COG0840 # Protein_GI_number: 15792820 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Campylobacter jejuni # 189 549 337 700 700 418 65.0 1e-116 MTNEASLSLNSVIEQEVAQKIKLATDSMAYSLGELVNGLDEKSQIAIIAKAIENFRFEGD KSGYFFVYKDHFPVAHPTRKDLIGKSLYDAKDPKGVYYVRELFESAKNQDEKGKFIRFEF SKPLPNGELIQAQKIGYAQMIPNTNNMWISTGVYIDTLGDYSNEISHSLMKDILYAINSY ILIAIIVAILIFLPLLLMFYKNLINSVNTLQRSILLFFSYINHEKTDIQLVQVNSNDEFG SMAKVINANIEKTKAGLIQDEKAIAQSAQTAKAIESGDLTARIVENPANPQLVELKNVLN KMLDVLQSKIGSNMNEITRVFDSYKRLDFTTEVKNAQGDVEVITNILGEEIKAMLKASAN FASDLAKQSQDLRESMQKLTEGSQSQANSLQQSVVAIEEISSSMQNVSDRTSEVTRQAED IKNIVGVIKDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTSKSLNEIEAN VNVLVQGVNDMSESIREQTTGVGQINEAVAQLETITHNNVIVANDTNAITQGVNKIANDI LEDVNKKKF >gi|197325096|gb|DS990370.1| GENE 257 251173 - 253746 1528 857 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 6 851 5 806 815 593 40 1e-168 MNILEKLTNTMQETLEQGASLALHNQNQEIEPIHLFWAMLTNTNSLLNQALNRLNIDKAA IELEAKSLANNLPKSSSVSKENLKISRNLSDALNQADGLAAKNGDSYIAIDTFILANLNT EMAKNLFAKYLDLNELKKTFEVIRGGTKINSQSGDENLEALEKFGIDLTQKAIEGKLDPV IGRDEEINHMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIIKKEVPISLQNKKVIAL DMSALIAGAKYRGEFEDRLKKVIDEVTKAKNIILFIDEIHTIVGAGASEGSMDAANILKP ALARGELHTIGATTLKEYRKYFEKDAALQRRFQPVPVNEPSVNEALQILRGIKERLEAHH NVTITDSALVAAAKLSNRYITDRFLPDKAIDLIDEAAAELKMQIESEPTELAKIKREIES LQVEKEALLMEKSEKNNARIQEIEKELSDKNEKKKALEVQFENEKQVFNEIANIKVQIDS LRTESALAKRNSDFNKAAEIDYGKIPELQRALEEQNQKWEKMQEAGTLLRNAVLPESIAA VVSRWTQIPIKKMLQDEKDKILGIEEELKKDVVGQDKALHAIARAIKRNKAGLSELNRPI GSFLFLGPTGVGKTESAKTLARFLFDSEKNLIRIDMSEYMEKHAASRLVGAPPGYVGYEE GGQLTEAVRRKPYSVVLFDEIEKAHPDVFNMLLQVLDDGRLTDNKGVTIDFRNTIIILTS NIASNQIMELKDEDSKEKAVKEALKAYFKPEFLNRLDDIVIFNPLGIEQITHIVDILFKN IQKKVAERDIQIELEQSAKEFIAKVGFDPTFGARPLKRALYEEVEDRLADLILQGEIKEG SKVTFYAENEEIRTKIN >gi|197325096|gb|DS990370.1| GENE 258 253919 - 254422 596 167 aa, chain + ## HITS:1 COG:MG408 KEGG:ns NR:ns ## COG: MG408 COG0225 # Protein_GI_number: 12045270 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Mycoplasma genitalium # 5 155 4 154 157 179 58.0 3e-45 MRVVIYLAGGCFWGIQGYFDLLKGVVSSQVGYANSKIEDPSYELVCSGITGAVEAVKVTY EDEILSLNEILQRFFDIINPFALNYQGNDFGTQYRSGIYAQDSKILEEVHSFIQNLQKNF SQEIVTEVMELENFYPAESYHQKYLAKNPNGYCHIDLSKALQNNYIP >gi|197325096|gb|DS990370.1| GENE 259 254534 - 254893 400 119 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224419136|ref|ZP_03657142.1| ## NR: gi|224419136|ref|ZP_03657142.1| hypothetical protein HcanM9_07672 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1431 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1431 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 119 1 119 119 202 100.0 8e-51 MRFLLVFICFFGVNLLGKNIEEGLKYLDIPNPKGQFLKETIREFYKQRQNYHNNNAILEY KILQEIANKGYGEVNFLEYRQMLEKNSQNYAQAKINFYRTIGQILNKKEITSLMEFIGE >gi|197325096|gb|DS990370.1| GENE 260 254896 - 255564 570 222 aa, chain + ## HITS:1 COG:Cj1227c KEGG:ns NR:ns ## COG: Cj1227c COG0745 # Protein_GI_number: 15792551 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Campylobacter jejuni # 1 220 1 222 224 169 46.0 5e-42 MYQILIVEDDLDMQKLLVDYLKKSGMEAIATDSPNEALEMLKSKRNFDLAVLDIMLPEMD GLELCKKIRQISDLPIIMSSARGDIGSKILGFERGADDYLAKSYEPIELVARINALLKRY SANQVIHYGDLEVDNNKHKVTLEGYSIDLTPAEFEILNLLISNKGKPYSRESLSQAISSI APDSSLRSIDTHIRNLRAKLGDDAKEPKYIQSVWGIGYKFCD >gi|197325096|gb|DS990370.1| GENE 261 255557 - 256795 1158 412 aa, chain + ## HITS:1 COG:Cj1262 KEGG:ns NR:ns ## COG: Cj1262 COG0642 # Protein_GI_number: 15792586 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Campylobacter jejuni # 9 409 6 406 411 123 27.0 8e-28 MIKKWLYPSLFVQIYLLFFISIVISVIITYSLNIANLRQNEEKIISQTTFLAQQSMLELI NGNVRRIHTLIKSYDFVHIDKIPQESTIIYKSSDTLAKMQIFKFHQNYGFGLEYLGESYI AQKDFNEQLSFRNNSIFWILLDFLVLLLTFAIILAILHPMKVLRNSLEEFTKGNYKVRIK IPKEPEQALLARSFNEMAAKISKLMEIREFILRNIGHELKTPISKAKLALEFIPPSPNKE ILSKAIQNLDTLTSQILTFEKVQEGKDLLEFKDFFVESLILETLSHMFISEEEVEIKINE NFKIYGDLNFLSIALKNLIENAKKYKSGGKIEIFTQKQDNCFCLRVGNEGEKLQKEIGEY FEPFYRDKKHELIQGHGLGLGIIKGILEMHHLELKYQYKDNHHYFMILFKGI >gi|197325096|gb|DS990370.1| GENE 262 256795 - 257730 1067 311 aa, chain + ## HITS:1 COG:Cj1237c KEGG:ns NR:ns ## COG: Cj1237c COG0248 # Protein_GI_number: 15792561 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Campylobacter jejuni # 5 306 2 324 324 108 28.0 1e-23 MQEFIGIDLGSNSLRGVRMNTQYEVLGEYEAVVRSAEGLNESGKICNAALERIVLGLQNL KKALKIKPQDRIIALTTQAMRQATNSKEVLEIIAQKTQIEFQIITGEEEAYITSLAPQRS VKKLAQVNPKYQKDCFVIVDMGGASSEFIFCTEKGITAKSFKVGIVQAKDQYKTLENFIA HKKEIIAPIVEFINEQSHNKPAFLVANSGTPTMVCAIKMGLKSYDSKKVFGKVLKIEDFK EELHKFETLNQEEKENLVGVFKADVVPFGIMLFLFFMEILEFEECLIIDEGVREGAAILG IDKINLHQKNK >gi|197325096|gb|DS990370.1| GENE 263 257801 - 258007 150 68 aa, chain + ## HITS:1 COG:Cj0916c KEGG:ns NR:ns ## COG: Cj0916c COG2879 # Protein_GI_number: 15792245 # Func_class: S Function unknown # Function: Uncharacterized small protein # Organism: Campylobacter jejuni # 1 68 1 65 65 60 55.0 1e-09 MKWEKFAFYCKKIYQKSDKFFHLLVGMPSYTKYLEHMQKNHPDKIPKTQREFFKEAMEAK YGAGRNKC >gi|197325096|gb|DS990370.1| GENE 264 258083 - 258490 560 135 aa, chain - ## HITS:1 COG:Cj0322 KEGG:ns NR:ns ## COG: Cj0322 COG0735 # Protein_GI_number: 15791690 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Campylobacter jejuni # 2 134 3 131 136 89 41.0 2e-18 MLEQLLKQNNLKITPQRITILKEIEKRGHISIEEIYENIREIHPSISLATIYKNLTSMQE AKIIDEVKLPNQKQRYELIKKPHIHLVCEKCGNITDMHFDNSIQQLKKDCETQTHYKIKD ASIVLLGICEHCQNN >gi|197325096|gb|DS990370.1| GENE 265 258769 - 260109 1451 446 aa, chain + ## HITS:1 COG:HP1152 KEGG:ns NR:ns ## COG: HP1152 COG0541 # Protein_GI_number: 15645766 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Helicobacter pylori 26695 # 1 440 1 440 448 556 67.0 1e-158 MFGAITESFQNAINKIRFQDDEKALKRAIDELKKTLLKSDVHYKVLKHLLEEVEQKTKLA GIGKESFLNALKESLNHILTAPGNYGFIFASKPPTIVLMAGLQGSGKTTTTAKLANYLKT RQKKVLLAACDLQRLAAVEQLRQLSHQVEVDFFYEENKTPVEIAKAAKEKAIAGLYDVLL VDSAGRLAIDEALMQELQAIKEAINPNEIFYVVDSLSGQDGVKSAATFHEKMNLSGVILS KFDGDSKGGIALSIAQLLGIPLRFIGVGEKIPDLEVFIPERIVSRLMGAGDIHSLAEKTA AIISEKEAKDISKKIKKGKFTFNDFLAQMDNIKKIGSMQSILSMIPGLSNMASSLKDIDL ENSKEIKQIRAMVNSMTPKERENPDLLNGSRKKRIALGAGVDVSDLNRFLKQFENAAKMA KKFSGKGGMNDLMALMKDARMGNLRR >gi|197325096|gb|DS990370.1| GENE 266 260205 - 260438 390 77 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239524562|gb|EEQ64428.1| 30S ribosomal protein S16 [Helicobacter pullorum MIT 98-5489] # 1 77 1 77 77 154 97 3e-36 MLMATVIRLTKMGRKKKPFYRIVVTDSRKKRDGGWIESIGYYNPLTEPSTVKFDAERLKY WVSVGAKMSERVQAITK >gi|197325096|gb|DS990370.1| GENE 267 260438 - 260677 292 79 aa, chain + ## HITS:1 COG:Cj0711 KEGG:ns NR:ns ## COG: Cj0711 COG1837 # Protein_GI_number: 15792060 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein (contains KH domain) # Organism: Campylobacter jejuni # 1 77 1 77 80 72 51.0 2e-13 MVEDFIALYVKKLVSEPEKIQVNKKELDTNFYEIEIVSSAQDVGRLIGKDGKMIGAIKTI ISGSKAKDGNSYRMIVKTQ >gi|197325096|gb|DS990370.1| GENE 268 260677 - 261228 666 183 aa, chain + ## HITS:1 COG:Cj0712 KEGG:ns NR:ns ## COG: Cj0712 COG0806 # Protein_GI_number: 15792061 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Campylobacter jejuni # 7 183 2 179 179 117 40.0 9e-27 MLQKNKTQKDWVSVAKIGRAVGVKGEVLLHLLTDFPESLKIGNTYFTQNGTLTIQNYNKE NSRVKFTQIDSPEKAKQITNLILYTTQDFTKEHCILQKDEFFWFDIIGSQIMEEDKILGE VSEIERLGEKDFLVIKTAKELCKNGLPKSFLIPYESRYILEVETNLNPKIIRTQLCKAIL ENS >gi|197325096|gb|DS990370.1| GENE 269 261228 - 261932 532 234 aa, chain + ## HITS:1 COG:Cj0713 KEGG:ns NR:ns ## COG: Cj0713 COG0336 # Protein_GI_number: 15792062 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Campylobacter jejuni # 1 229 1 233 234 265 56.0 8e-71 MHFSFVTLFPHLIQSYFSDSILYRAIENKKISIDFINPRDFSNNRFLKVDDYQIGGGAGL VLEPFAISKALEKLKERDPKAHIIFLTPCGKTFNQSDSKRLAKKDHIILVCGRYEGFDER LIELYANEVLSIGDFILTGGELAALCLCDSVSRQVDGVLGNNQSLQGESYENFLLEAPNF VKPHIFKNLSVPSEYSKGNHAKIHDLKLKASEAKTRFHRIDLYWQYKQRLKNEK >gi|197325096|gb|DS990370.1| GENE 270 261922 - 262278 593 118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224419147|ref|ZP_03657153.1| 50S ribosomal protein L19 [Helicobacter canadensis MIT 98-5491] # 1 118 1 118 118 233 100 9e-60 MRNKYIQHFEDAQIAGKEIPQFKAGDTLRVGIRISEGDKTRIQNFEGICISLRGVGTGKT FTIRKIGANGVGVERIFPLYSESIDSIKVLKIGRVRRAKLYYLRTRSGKSARIKEIRK >gi|197325096|gb|DS990370.1| GENE 271 262355 - 262534 86 59 aa, chain - ## HITS:1 COG:Cj0937 KEGG:ns NR:ns ## COG: Cj0937 COG0679 # Protein_GI_number: 15792266 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Campylobacter jejuni # 1 59 245 303 303 63 67.0 6e-11 MELEPRIIVAILESAMPTMTLAGAMIMKAKLDTNLAVSSIAFGILFSFVSIPLLCYFLF >gi|197325096|gb|DS990370.1| GENE 272 262751 - 263335 619 194 aa, chain - ## HITS:1 COG:Cj0937 KEGG:ns NR:ns ## COG: Cj0937 COG0679 # Protein_GI_number: 15792266 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Campylobacter jejuni # 1 194 1 195 303 201 65.0 9e-52 MFIFTPLFTIFVLLLGGYLAKRVGVLKQKQSRMFLDFAILFALPCLIFDKTYHLNFDLSL IALILGGLLSCVLAALFAVVLGVIFKFSKSTLASMFLLAGFGNTLFVGIPIVSGVYGEVF LSEVIFYDALATAIPISIIGPIVLSCVGSQKVNMLENIKKILFFPPFIALMLGFICKIFV LPEFVFKPIVIFGS >gi|197325096|gb|DS990370.1| GENE 273 263594 - 265003 1918 469 aa, chain - ## HITS:1 COG:jhp0405 KEGG:ns NR:ns ## COG: jhp0405 COG0265 # Protein_GI_number: 15611473 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Helicobacter pylori J99 # 10 463 15 472 476 498 57.0 1e-140 MKIKTLLFGALLAGNVFAFEVSTLPNITSRETPDISENKVYSFYDSIKEAKKGVVNISTQ KKVKAANIQGHPLLNDPFFRQFFGDAFGAIVPKDRIERSLGSGVIISSDGYIVTNNHVVE GADKIIVALPDSNKEYEAKIIGRDEKSDLAIVKINAKNLPFLKFASSDDLQVGDVVFAIG NPFGVGESVTQGIISALNKSGIGINDYENFIQTDASINPGNSGGALVDSRGGLIGINTAI LSRTGGNHGIGFAIPSEMVKKISKALIEDGVIERGYLGVSIQDINGDLKEVYKNQNGAVV ISIENDSPAQKSGLKVWDLITKVNGKPIRSAAELKNYIGTFSPKDTINLTIIRDKKEQNL TLTLAKLANTQSIAKEVGSIQGLEVSELTPTMKENYGIPSNIQGIFISQVAPNSKAEELG FREGDIIVQIESFSISDLKSFNDALKRYKGQPKRMLINRGGRIFSIVAK >gi|197325096|gb|DS990370.1| GENE 274 265352 - 266848 2257 498 aa, chain + ## HITS:1 COG:HP0601 KEGG:ns NR:ns ## COG: HP0601 COG1344 # Protein_GI_number: 15645226 # Func_class: N Cell motility # Function: Flagellin and related hook-associated proteins # Organism: Helicobacter pylori 26695 # 1 497 1 509 510 430 62.0 1e-120 MAFQVNTNVNALNATAQSTFTQNSLSSSLQKLSSGLRINSAKDDASGMAIADSLRSQANT LGQAIRNANDGMGIIQIADKAMDEQVKILDTIKTKATQAAQDGQTSTTRTAIQADINRLI ESLDNIAQTTSYNGLSLLSGSFTNKEFQVGAFSNQSIRASIGATSSDKIGHVRSETLKFS ALGTTSLNFVQAQGTNDVTLESVVISTSAGTGLGALAEVINKNSNALGGVRAEATVIRTG TQSVAAGDVTSLTINGIKIGDIAGIQANDSDGRLVQAINAYKEQTGVQASTDEAGRLVLT SNDGRAIQVAGGGMSAGGAAIITAANATSTFVGSLTLTRVGANDIKISGTGLTNVAKTSG TAQTTTTLRNIKGNLSADVKSAIGANAGAWSGATGQGLEAGVITLKGAMLVMDIAESAIK QLDSIRSDLGSVQQQMQSTVNNITITQVNVKSAESGIREVDFASESANYSNLNILAQAGS YAMSQANTVQQNILRLLQ >gi|197325096|gb|DS990370.1| GENE 275 267002 - 267781 327 259 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc [Roseobacter sp. AzwK-3b] # 9 235 20 242 263 130 33 6e-29 MKKENIKLMGHIVASFPSFGESLEAALGIARGGAEYLEVQFPFSDPNADGVVIASACEES LKNGFNTDLGFEFLQRLNEAFKQRDIQTKILIMTYGNILFAYGIEKFLKKAKECGVFGLI VPDLSLQNDERLFELSKKHGLENIALIAPYTDAKRMEKLDGATGSLIYVIARNGITGDGT SIDSTLLEYIKRVKKHTTKPIALGFGIHSREQIDALRGIVPIVVVGSAFVRMIAQSAEQK VNLQDKLYHFTRDLIGITL >gi|197325096|gb|DS990370.1| GENE 276 267783 - 269051 1530 422 aa, chain - ## HITS:1 COG:MJ1037 KEGG:ns NR:ns ## COG: MJ1037 COG0133 # Protein_GI_number: 15669226 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase beta chain # Organism: Methanococcus jannaschii # 7 406 4 403 404 420 54.0 1e-117 MAEKIFLKSKKGFFGENKGDFHAFGGQYVPEILYPALEELEKAYKKLLFSKGFQKEFKEL LKEFVGRPTPLIYAKNASKILQNQIYLKFEGLANTGAHKINNAIGQVLLAKKMGKTRIIA ETGAGQHGLAVSAACAKLGLECVVFMGSRDVKRQFPNVFNMQLLGAKVIGVESGSQTLKD AVNEALREWSKDSKNTFYVLGSALGPYPYPDIVREFQSVISKELKTQTKQFFKGNPDIMV ACVGGGSNAMGFFRHYLEDREVTLVGIEAGGMSKEKGKNAIRMGNANAHLGIVQGYKSYF LSDNYGNLLETYSISAGLDYAGIGPQLAHLKEIGRVEFSSSSDKEALEALEFFARNEGII AALESSHALAGALSIAKKVKNKKILVNVSGRGDKDIFITAKALQKDRWSEFLANEIAEMR GQ >gi|197325096|gb|DS990370.1| GENE 277 269169 - 270641 1672 490 aa, chain + ## HITS:1 COG:XF0210 KEGG:ns NR:ns ## COG: XF0210 COG0147 # Protein_GI_number: 15836815 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Xylella fastidiosa 9a5c # 114 483 109 480 487 276 43.0 5e-74 MFKFLNLNQKGYDSALEFCKIPASKLTPLMLCETFNAPVLLESAFLKSGKGRFSILILEE AFRVTKDNQETSLLFLDSKHILPKRPFLETLESLRKLAPNPNDSQLNSTLPSDLPLPLGG VGYLGYEFFSEIESLSFNNPPLYDCYDNAFIFGRDFAIFDHFYESLYLISVAYDQETQSH NLKNRLDKLIQKLENIQQKQESPQNYHSKVISSDKQSYYTHMVTFLKDEIYKGNLLQCVP SQSMQIQSDLPPLRAYQNLRTNNPSPYMYYYNFGHFQIIGSSPEVLVKVEKIDDKKAKIT LRPIAGTRKRGNNQIQDLQLEEELKNNPKENAEHLMLLDLGRNDIGKVAIGGSVEVTQEK VIEKYARVMHLVSEVEGIMDLQIHNKNDAILATFPAGTVSGAPKIQAIKTIESLEEHKRA IYSGAIGYFTQDGDMNFAIAIRTAVYQKGIYYLQAGAGIVYDSIPKEEYLETKNKMLSLV EAIMGENNAN >gi|197325096|gb|DS990370.1| GENE 278 270690 - 272309 1738 539 aa, chain + ## HITS:1 COG:aq_196 KEGG:ns NR:ns ## COG: aq_196 COG0547 # Protein_GI_number: 15605759 # Func_class: E Amino acid transport and metabolism # Function: Anthranilate phosphoribosyltransferase # Organism: Aquifex aeolicus # 195 534 5 339 340 231 37.0 2e-60 MILLIDNYDSFTYNIYQAFSRFNYPIKVLRNDQTSLEEIQSLNPSYIIIGPGPKSPKDAG ISVQIVQHFKGIYPILGICLGHQAILSAFGVEIKNAKNIVHGKVEPLIHNAKGIFRHISQ KTPIARYHSLVGKKEEIPDCFLISGMSEDGEVMAVEHRQYHLVGLQFHPESIGTKEGIKM LLNFLHYTREPIPTKDYLKKVLHQKSLNFQESYNLMDELTEGNLSDAQIGSILTSLEIKG IDEYELAGFASVLKKKAVKLNLKDNFNIRFDMVGTGGSEAKTFNVSTTAALLLATQAQKS NFGIIKHGNRAVTSKSGSADLLNALGINVTMDFSNVKTIYENLHITFLFAQKFHSAMRFA ANARSSLGFKTAFNLIGPLSNPSPITHQLIGVFDKSYTEIMAKALAILGVKRAMVVSGLD GYDEISLCAPTQITELQNGSIKTYIFNPIEVGLDFVNHSLLQGGDSQENLQITLDIFNAK PSPKLDLVALNMGAALYLCNQAESIKEGFFKAKEIIQSKEIFPLLESFKTLSNQRPIKD >gi|197325096|gb|DS990370.1| GENE 279 272312 - 273799 1539 495 aa, chain + ## HITS:1 COG:Rv1611 KEGG:ns NR:ns ## COG: Rv1611 COG0134 # Protein_GI_number: 15608749 # Func_class: E Amino acid transport and metabolism # Function: Indole-3-glycerol phosphate synthase # Organism: Mycobacterium tuberculosis H37Rv # 37 246 54 251 272 124 37.0 5e-28 MIPTILKKILQTKAKYPILKATRTTKLTPPKFSFPFLIAEIKRASPSAGDIGAINSPKDL AQSYLNGGASAISVLCEKDFFKGDLEDLRATKLSHENSTILRKDFITELDQIQESYDFGA DMVLLIAAVFIGDDNENGGFARLKQLYEESLKLGLTPLIEVHNAKEVDFITPLQATLIGI NSRDLHTFSINKIQAYNLLDCIQKTNPQSKIIFESSIECSFDGFVVGNIGFDGILCGSYL VRDSAPTQTLKCLKDSIISGKQSPNTFYRNVFKLLDSKQGFLKICGITSSEDALMCAKAL ESNLNSPLEKIAALGFILAKDSPRFTSPKTIKEIAKALQAHPKILKIAVVKDDQEMMQIA INLYKEGIIDALQLHGVSQKSFGGVDLKNANFAFYEAWNIEKPEDLGDFISPFVLLDSKS TLGGGSGKNIAPKTLESLQEKTNHYLCVAGGVGISNIQDLRKIGVKMFDVNSSLESSIGK KDQQKISEFLKIFTS >gi|197325096|gb|DS990370.1| GENE 280 273888 - 274136 416 82 aa, chain + ## HITS:1 COG:no KEGG:WS1814 NR:ns ## KEGG: WS1814 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 82 4 85 85 93 57.0 3e-18 MKTLTLASIYETQGHRYEAAQIYKTILQENPNNTEAKVALKRLTSNRKSYGKADENMLNL FVQMDSKIEFNEFERWLLQLWN >gi|197325096|gb|DS990370.1| GENE 281 274127 - 274519 407 130 aa, chain + ## HITS:1 COG:no KEGG:WS1815 NR:ns ## KEGG: WS1815 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 130 1 126 127 62 39.0 4e-09 MELKEAILQTLAEIDTNTDSTISPEEKPERDALLDIIATEETKKESPTTPASYERKIQKL DLKNNEELKQLLIKYYSEEEKFLNNLQDRILVLFEGLQSPNNRNIEEKVDMILNFLEFTL AIIDEKKNQK >gi|197325096|gb|DS990370.1| GENE 282 274516 - 274761 218 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224419159|ref|ZP_03657165.1| ## NR: gi|224419159|ref|ZP_03657165.1| hypothetical protein HcanM9_07789 [Helicobacter canadensis MIT 98-5491] # 1 81 1 81 81 137 100.0 2e-31 MKKTFSFTFDLLYYFIISLSQAGWLEIQMFRTTLVRVFHPFLLCEENLFLIRDIYSSGCF PEFLINPLKYPILLFVRKTPC >gi|197325096|gb|DS990370.1| GENE 283 274755 - 275441 1121 228 aa, chain + ## HITS:1 COG:HP0166 KEGG:ns NR:ns ## COG: HP0166 COG0745 # Protein_GI_number: 15644795 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Helicobacter pylori 26695 # 1 223 1 224 225 238 62.0 6e-63 MLEILMIEDDLELATILSEYLKAHNINATNYDEPYTGMSAINTRHFDLLLLDLTLPNLDG LEVCKKVAKEKRIPIIISSARHDVDDRVLGLEYGADDYIPKPYDPKELVARIHSVLRRYK TIEKPDSTEIICPPFRLNKSSREIFLNNTPLDLTKAEYEILSFMIENKNQALTRDSIAAH SDSISPDSTNKSIDVIIGRLRSKIEKEGKKYIFSIRGIGYKFQTKDNE >gi|197325096|gb|DS990370.1| GENE 284 275434 - 276675 1193 413 aa, chain + ## HITS:1 COG:jhp0151 KEGG:ns NR:ns ## COG: jhp0151 COG0642 # Protein_GI_number: 15611221 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Helicobacter pylori J99 # 5 402 4 402 442 257 38.0 4e-68 MNKNSIIVKITILFLIAIVGLSAFSYYFIREEINKKAYENQLKYTQFLATINQLVRFGGN IALIEKYLNELGLVQIDNPEFLSHFQNHITPNFSQGVIAKIIKEKKGIYLFLQTPNGWRV YGDIHFDRLFNYYIITLIAFIIVVFLFVLVIRSLLPLKTLQKEIRKFANGQTDIRCKIDQ NDEIGELAQEFDNAVKKINALNQSRHLFLRSIMHELKTPITKGRITAEMIDNALYKERLC SVFERLNSLINEFAKIEELSSRNYCLNKCNISLKAVLDKVFEMLLLDKEQISTLFIFPKE ECFLYADFEMIALVIKNLIDNAIKYKTQGQIEIYIQDKNLGIKNYGMPLPYSLQDHSKPF FKDSKSNTSGLGLGIYIIKSTLESQGLELEYFYKENQNNFIVKGVISHKTLKG >gi|197325096|gb|DS990370.1| GENE 285 276679 - 277644 1279 321 aa, chain + ## HITS:1 COG:Cj0995c KEGG:ns NR:ns ## COG: Cj0995c COG0113 # Protein_GI_number: 15792322 # Func_class: H Coenzyme transport and metabolism # Function: Delta-aminolevulinic acid dehydratase # Organism: Campylobacter jejuni # 1 321 1 323 327 438 64.0 1e-123 MFKRLRRMRLNPNIREMLTQTTLHKKDFIYPLFITHGKNIKNPIESMPDVFQLSIDEALK ECEVLQNLGIFSIILFGIPKIKDSIGSEALSPEGIIAQATRAIKEKFPNMLVCVDLCFCE YTDHGHCGILNPKLNSVDNDLTLEILNQQALILAQSGADLIAPSAMMDGMIESLRTALDS NGFNHIPLMSYSTKFASGYYGPFRDVAQSTPSFGDRKSYQQNPANRREAILESLEDEAQG ADILMVKPALAYLDIVRDIREQTLLPLAIYNVSGEYAMLKFAQKAGIIDYERVLLETMIS FKRAGADIIITYHAKEIANLI >gi|197325096|gb|DS990370.1| GENE 286 277734 - 278693 692 319 aa, chain - ## HITS:1 COG:jhp0321 KEGG:ns NR:ns ## COG: jhp0321 COG0564 # Protein_GI_number: 15611389 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Helicobacter pylori J99 # 1 313 1 281 293 176 38.0 5e-44 MPFIKQKFYFQTPIKAYLFLMRQFNLNMAQAQSYINKGRVVYESKILGNNEKNKVLEREV EVWIFKPNSIGLKPIYENEDFALFNKPAQMLIHPKGRFFHHSLMDEVREYFGTEASLIHR IDKETSGLVLVGKHKRSIVELGELFANNRIKKKYLALIKGKMCKTSKIVGDFCLLMPLSL QEKGGDLSVRSVFLGQNLRKDSKLLGFRDAKSEFEILGEFGGNTLLKVYPITGRTHQIRV HLFSLGFPILGDPLYGCEDWQSREYLDSEFIEENRDFGLCAEKRKEYFGADRLMLHAYSL EFSYKGREYYFRSCEGFCL >gi|197325096|gb|DS990370.1| GENE 287 278754 - 280103 1163 449 aa, chain + ## HITS:1 COG:Cj0023 KEGG:ns NR:ns ## COG: Cj0023 COG0015 # Protein_GI_number: 15791422 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Campylobacter jejuni # 1 447 1 441 442 664 73.0 0 MVERYAREEMKKLWDMNAKYSAWLEVEKALVKGWNTLGLIPDCDCKKICENAKFDIARID EIEAVTKHDLIAFTTSVAESLGEESRWFHYGITSSDTIDTAVALQMRDSLKIIIEDVKAL REVIKKRAYEHKDTLMVGRSHGIHGEPITFGLVCAIWYDEIGRHLQSLESTLEVISVGKI SGAMGNLAHTPIELEELVCANLGLKAAPASNQVIQRDRYARLMTDLALLASSCEKIAVEI RHLQRTEVYEAEEYFSQGQKGSSAMPHKRNPVLSENITGLCRVIRSFALPAMENVALWHE RDISHSSVERFILPDGFITTDFMLVRLTSLIDKLVVYPKNMLKNLNLTGGLVFSQRILLE LPKCGVSREDAYKIVQRNAMKVWQSLQEGQPALNAKGESLYLQYLLADSELVGLLSKNGG NGEQIIRDRFEFAYYTKNVDSIFKRVFGK >gi|197325096|gb|DS990370.1| GENE 288 280066 - 280782 595 238 aa, chain + ## HITS:1 COG:VCA0447 KEGG:ns NR:ns ## COG: VCA0447 COG0863 # Protein_GI_number: 15601210 # Func_class: L Replication, recombination and repair # Function: DNA modification methylase # Organism: Vibrio cholerae # 33 237 20 220 230 77 27.0 2e-14 MWILSLKGCLGNDNNFAAKKVLSLYDLNTKLTIDGLELLQSLGDCSIDLCFFDPQYRGVL DKMRYGNEGERQKGRSVLVQMSESTIIHFIQEISRVLKSSRYLMLWIDKFHLCEGVRPWL DSTSLEIVDLITWDKMKMGMGYRTRKQSEYLLIVQKKPIKAKGTWKLHNIRDVCSEKIPQ NELKAHPHSKPKTLQKTLIESCTNIGDLVCDPAAGSFSVLECCKELGRNFIGTNLTTK >gi|197325096|gb|DS990370.1| GENE 289 280799 - 281206 575 135 aa, chain - ## HITS:1 COG:no KEGG:HH1059 NR:ns ## KEGG: HH1059 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 129 1 130 130 145 65.0 4e-34 MMLNPDLAKLLLRLCVGGLMLFHGVFKILHGVDVYMGMLESKGLPGIMVYGVYIGEVLAP LLILIGYQVRIAALIVAFTMIMAIYLVYGFEIFALDSYGGWVIEHQLLYILPCLALFFMG GGKYAFFKKEEKIKA >gi|197325096|gb|DS990370.1| GENE 290 281458 - 282291 798 277 aa, chain + ## HITS:1 COG:TM1009 KEGG:ns NR:ns ## COG: TM1009 COG0656 # Protein_GI_number: 15643767 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Thermotoga maritima # 9 273 6 269 286 234 45.0 1e-61 MQSTIMQYVTLNNGIKMPILGFGTYSINDSHTILEAISYGYRLFDTAQMYGNEHKVGTAI REAIDKMEIKREDFFITTKLSNNMNFQEAKKGIEFSLKSLNSSYIDLILIHEPYPKAKEM YKAMETYYKEGKLKAIGISNFTLHTFKEFIKTCEIPPAINQCETHIYYQQAALLQTMKPY GTTLESWSPFIAGKVSKNKNGFFNDSALAKIAHKYNKSIAQIILRFFTQQGIVTIPKASK KEHMQENIDIFNFNLTKEEIKTIKTFDKNATQFSWGY >gi|197325096|gb|DS990370.1| GENE 291 282539 - 283519 1009 326 aa, chain + ## HITS:1 COG:PA2218 KEGG:ns NR:ns ## COG: PA2218 COG1073 # Protein_GI_number: 15597414 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Pseudomonas aeruginosa # 3 326 49 365 367 375 57.0 1e-104 MAQANTQTQWDKTFPKSNNVEIQKVTFKNRYGITLVGDLYIPKNISKDAKLPAIAISGPF GAVKEQASGLYAQTLSEQGFITLAFDPSFTGESALENKNLPQNVASPDINTEDFSAAVDF LSNYSKVDSNKIGILGICGFGGFALNAAAIDTRIKATVTSTMYDMTRVNAKGYNDSIDAK ARLELKRSLNEQRTKDFKNNTYAKAIGLPEKLNGDEPQFIQDYYNYYKNKERGFHPRSIN SNGNWNLTSSLSLINMPILAYSDEINTPVLMIHGDRAHSRYFTEDAFKKLKGDNKELMII KDANHVDLYDNLDKIPFAKITEFFKD >gi|197325096|gb|DS990370.1| GENE 292 283765 - 284148 362 127 aa, chain + ## HITS:1 COG:RSc0630 KEGG:ns NR:ns ## COG: RSc0630 COG4925 # Protein_GI_number: 17545349 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 16 114 11 104 118 72 37.0 2e-13 MMITMEIINETKQKEKTLYIELEENVASKEFIKQLPLELEFSDYANKEKVAHLPYNLSVK NTPNYNPQIGDFFYFSPWGNIGIFYGKQPPFNGLVYLGKILQSNLGENEIETLREIKQDF KAILKAK >gi|197325096|gb|DS990370.1| GENE 293 284152 - 284658 484 168 aa, chain - ## HITS:1 COG:jhp0678 KEGG:ns NR:ns ## COG: jhp0678 COG0537 # Protein_GI_number: 15611745 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Helicobacter pylori J99 # 1 156 1 155 161 186 52.0 2e-47 MEHLYAPWRSGYFKERQKEGCIFCNISQAPHLDLQNRVFYRDESLFCVMNKFPYTPGHFL IVPHFHTHSPEFLEEDLWLNLQKCARKGISLLKEFGAKGINLGMNLEQAGGAGIPEHIHL HLLPRYVGDTNFFTTIGDCRAYGVDFDEIFQKIKELSLKHFKNQQSNQ >gi|197325096|gb|DS990370.1| GENE 294 284667 - 286100 1212 477 aa, chain - ## HITS:1 COG:jhp0677 KEGG:ns NR:ns ## COG: jhp0677 COG0770 # Protein_GI_number: 15611744 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Helicobacter pylori J99 # 4 477 12 493 493 429 48.0 1e-120 MMSRWIFLIALGYYVIINLQWYHYRLSRVLFKHHKQRWHFFYFLVPVLYFVFIPENIYFY FGFYLYIFALIIWALRLSKGLVLTGRVSRFFGLYLIFILFNELLLFGEESSSLMRVVYLL PLVISVFLSSLVEGILLSRYKKIAIETLKSMPNLTIIAVTGSYGKTSLKNFLVQVLQDEF KVYATPRSVNTLTGIIADINQNLSSLTDIYIVEAGARRIGDIKEIVELIKPQIAVIGKIG PAHIEYFKSLDNIYKAKYEILQSPNLQKVYNYKDNTPPQNFYGNMIWFPQNVSSVDTSLN GTSFSLTYNGEKMDFETKILGAFNVANISAAIQVAKDFGISSERIIKQVCRMEGVSHRLS KIMVNDKVILDDSYNGNLDGMLEAIRLSSLYDGRKVIVTPGLVESSKEANIALAEAIDRV FDIAIITGELNSKLLKEHIHKPQKIILKDKKNMENILKSATMAGDLILFANDAPSYI >gi|197325096|gb|DS990370.1| GENE 295 286183 - 286797 466 204 aa, chain - ## HITS:1 COG:HP0739 KEGG:ns NR:ns ## COG: HP0739 COG0596 # Protein_GI_number: 15645359 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Helicobacter pylori 26695 # 1 203 41 241 241 184 48.0 7e-47 MKQVFSESFKEFRHLYIDMPGFGKSKNPPFSLDTRDYAAILSILLNEIKIEEFSIVGHSF GGKVATLLNPKELILLSSAGILKKKKLKVRMKIALSKKLNQISPALGQMFSQILRSRDVS GMSQVMYETFKKVVDEDFSGIFENFKNQAFIFWGKEDSITPLDCGEKIHSLIKKSYFFPL EGDHYFFLKQAKKIEELYFKAKSI >gi|197325096|gb|DS990370.1| GENE 296 286917 - 287954 898 345 aa, chain - ## HITS:1 COG:jhp0675 KEGG:ns NR:ns ## COG: jhp0675 COG1181 # Protein_GI_number: 15611742 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Helicobacter pylori J99 # 1 340 1 344 347 362 54.0 1e-100 MNFCFLFGGSSYEHEISIVSAIALKKLLGNVEYFIFLDDTHTFYLIPKDKMQSKFFSTKA YLKATRIYPKNGGFYQKTLWGEKKLPLPIVVNLIHGADGEDGRVASLLDFYGINYIGPRN PACVLSFDKELTKMLAKECGVLSLDYQMVHKDSIPKVTLPFPLIVKPARLGSSIGISVVY EEKELEYAIQEAFEYDDKAIIEPFVSGIKEYNIAGYKSKEGMHFSFIEEPQKKEFLDFEK KYLDFSRTESAKEAEISESLKQTLQENFTKIYGNLFDGALIRCDFFVKENQCYLNEINPI PGSLANYLFVDFRNALEELSRNLPKPREIKVAYEFLHKIQFAKGK >gi|197325096|gb|DS990370.1| GENE 297 288020 - 289096 941 358 aa, chain - ## HITS:1 COG:Cj0905c KEGG:ns NR:ns ## COG: Cj0905c COG0787 # Protein_GI_number: 15792235 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Campylobacter jejuni # 1 358 1 328 328 180 33.0 4e-45 MAYLQINSQHFFSNYHQIAQFIGQENIHKIAIVLKDNAYGHGLKEMAQLAKEAKITTCFV KNTKEALEIAAMFRHITILYPQSLEDKEALQQCLKQDNIYFCVASLEALKLYPKQTKIEL EINSGMNRNGIQAQQLQEAFEIINKRELELIGVFSHNGFGDDFGSEFYTQNNEFLMVKKK VLELCNQYSFKKPRFHFFSSSGALRAVRYNESLPLELQDDLFRIGIAFYGYLCQDIRFCG LNVKPIASLWARKISTYFLKKGSRIGYGGVSETKEDTLVSSYDVGYGDGLFRLREGMELK TKEGFKIYPRSSMDCLSIQGDREELCIIEDANPWAEAFGTIPYEILVHLQPTIPKKIV >gi|197325096|gb|DS990370.1| GENE 298 289128 - 289442 567 104 aa, chain - ## HITS:1 COG:no KEGG:HH1517 NR:ns ## KEGG: HH1517 # Name: not_defined # Def: cytochrome c553 # Organism: H.hepaticus # Pathway: not_defined # 1 103 1 101 101 93 57.0 3e-18 MKKILLSLVLATGCLMAADGATLYKKCIACHGMNGERVAPGSKGNVKIGGMDKAELVTQL KGYAAGTADNGGAKQIMYANMKNFKFTDADIDAVADYISKLPKN >gi|197325096|gb|DS990370.1| GENE 299 289985 - 290791 865 268 aa, chain - ## HITS:1 COG:Cj1061c KEGG:ns NR:ns ## COG: Cj1061c COG0060 # Protein_GI_number: 15792388 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Campylobacter jejuni # 1 266 656 913 917 213 43.0 4e-55 MGENYRKIRNTIRFLLANTNGLESLEVTSFNPIDLWILKSARECFEKVNALFGEYEFSKA IQELTYFLNTELSGIYLDICKDNLYCNALSSEERRASQSVMALICGRLFGLLAPIFTYTI NEALSHTQSRVVLESCGIIKEGDVFEILYTPLPSFENPNLNFDELLELRGVFLEQIDILK KDSKIKSTLEVDLAVPQKMAEFAELNLWLMVSNVRKEAEGEVLAKFTFGGENYRILRAQG HKCPRCWQFVSQKADEPCERCQKVLEER >gi|197325096|gb|DS990370.1| GENE 300 291136 - 293091 2014 651 aa, chain - ## HITS:1 COG:HP1422 KEGG:ns NR:ns ## COG: HP1422 COG0060 # Protein_GI_number: 15646031 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Helicobacter pylori 26695 # 2 649 3 645 920 818 60.0 0 MDYKDTLELPNTTFPMRGNLPQNEPKIYQEWGKREYYERILKNRENAKESFNLHDGPPYA NGHLHIGHALNKILKDIINKYHYFQGKKIFYTPGWDCHGLPIEQQVEKKLGKEKKDSLPK SKIRELCRKHAQEFVEIQKKEFLELGILGDFENPYKTMDFAFESEIYKALCEVAKKGLLK ERSKPVYWSWACQTALAEAEVEYEEKESDSVFVAFALKEDALTAIGAKELGLDQAYCVIW TTTPWTLPANSGIALNPNETYALTSDGKIVLHSEVEKLSAINVVENQILKTFKACILENT HAINPLNGRDSKIILGEHVASGEGSGCVHTAPGHGEDDYFIGLKYDLPMLMPVDDKGCYD ETLIREKLFFNPDEFVGKFVFDAHPRIFELLGKNLLRHAKIRHSYPHCWRSHQPIIFRAT QQWFIVMDEPFSKEGKTLREVALAEIDKTKFFPDHGRNRIRAMIENRPDWCISRQRDWGV PIAFFKDKRSGEVLLESEVLDFVAEIFEKEGCDAWWNKEVKDLLPQKYQKDSDHFEKIYH ILDVWFDSGSTWKAVLQSNLYRSGGYPASLYLEGSDQHRGWFHSSLLVSCAVNEKAPYKA IVTHGFTMDEKGEKMSKSKGNVVVPKEVLKEFGSEILRLWVAMSDYQNDQS >gi|197325096|gb|DS990370.1| GENE 301 293216 - 295156 1717 646 aa, chain + ## HITS:1 COG:no KEGG:WS0172 NR:ns ## KEGG: WS0172 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 15 642 12 639 675 198 25.0 8e-49 MKKVLSSKIFLSFFGLILIALILAVLIFSPIGNYFIKNALLAKLETHTQMQWKSHNFKLT PSTITLEFSTQDDKLELFLKGDYSLFLQTLKGDFYINSKGFQTLFNQKVLSFRDNQWIEG NFEGNFHHYTLYASSNLFLSQSNLTATLHYLSPQTINLNLTNGSLASLLETLNEKPYGDG IITLNANFTHLQKSYDGTFDLEIEGGELDKNLFLSEFNLEIPNTSFIGKLETTLQNNALT HYLKIYSTIGDALIKGTTNIYSLATNTNFKINLASLSPLSPFFKIPLNGSFDAKGIAKGD FKNMLLDGEIQLSHSPLNYNLNLQNLKPKTLKISSKDLKAQSLFLLFNKNPYFEGKVDLK VDLRDFSQGISGIIALDSQNLFINSPLLEEKTQIGFPSTNFTFNSQIELANGSGIVNYLL ESNFLKLQAQKGNLTLKSLKFEFPTTLEVTKLQNLSYRNKTALQGSLITQGIHTEDSFEL QGTLNYNQNQNPFSLMLTPQNFALRIQQIPSSQIYTLFDQAPRYFSGIGNFSLNSDFINH INNINFDIHSLSFQSTPLLQELQNKSKQNFTKENFNGYIYNTTLQNEILQSRISLQSKNF KIQSQKITTNLNTKEIEGDFTLKTKSKESKYTIYGKTSHPRIKPIQ >gi|197325096|gb|DS990370.1| GENE 302 295245 - 296477 1745 410 aa, chain + ## HITS:1 COG:STM2472_1 KEGG:ns NR:ns ## COG: STM2472_1 COG0281 # Protein_GI_number: 16765792 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Salmonella typhimurium LT2 # 2 405 3 406 434 432 57.0 1e-121 MEDLKQTYPDSLPYHQGGKLEVIPRTKVENEHDLSLAYSPGVAVPCKEIQKDPNLAYEYT SKGNLVAVISNGTAVLGLGNIGALAGKPVMEGKAVLFKKFADINAFDIEIDETNPDRFIE IVKAIAPTFGGINLEDIKAPECFYIESRLKEILDIPIMHDDQHGTAIISAAGIINGAKIA NKNIQDLKMVVLGAGGAAIACAKIAQKLGVKEIIMFDSKGAITTHRKDSLNGFKKDFIID RKIDTYKEALDGADIVLGLSRGDILEAKDIEGMNKNPMIFVMSNPIPEIDPKLIREVRPD AIIATGRSDYPNQINNVLGFPYIFKGALKARAKSINESMKLAAANALAQLAQEEIPPALK AELEKIHQRKFEFGKEYIIPSPFDWRLKDFISNAVAQAAIDSGVARIKAL >gi|197325096|gb|DS990370.1| GENE 303 296478 - 296699 353 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224419181|ref|ZP_03657187.1| ## NR: gi|224419181|ref|ZP_03657187.1| hypothetical protein HcanM9_07901 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1473 [Helicobacter canadensis MIT 98-5491] malic enzyme [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1473 [Helicobacter canadensis MIT 98-5491] malic enzyme [Helicobacter canadensis MIT 98-5491] # 1 73 1 73 73 125 100.0 9e-28 MEEFDYKLVMFGFSALCEDLEEVQRRLSLYPKERYELENGEECFLIDLRTKEQFPIILEN NRFVISKTPKNLD >gi|197325096|gb|DS990370.1| GENE 304 296789 - 297367 638 192 aa, chain + ## HITS:1 COG:HP1335 KEGG:ns NR:ns ## COG: HP1335 COG0482 # Protein_GI_number: 15645948 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Helicobacter pylori 26695 # 3 190 20 211 360 221 56.0 5e-58 MKKVLLLMSGGVDSSYCAYLLQKQGYSVYGIYLKLHDKEEKHDYYTRNIQKCAESLNIPY QIVDERELFKKSVYDYFVDSYKKGLTPNPCAMCNPNVKFNIAFKLAKDLGCEFVATGHYA QIKNGRIAQAVDTHKDQSYFLFGLKPEWIEKIIFPLGDKKKEEIKPIALKELPWLGTLET YKDSQEICFVAS >gi|197325096|gb|DS990370.1| GENE 305 297529 - 297906 339 125 aa, chain + ## HITS:1 COG:Cj0053c KEGG:ns NR:ns ## COG: Cj0053c COG0482 # Protein_GI_number: 15791445 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Campylobacter jejuni # 1 122 223 337 338 115 47.0 3e-26 MQYTIGKRKGFTIKGALTPHYVLKINPQDNTIIAGSKEELATNKVQALNLSLPKEWFQDN KVLDCEVKIRYKSHKIPAQITLMSNGNQDIITANLKESAYGVANGQALVLYNGNEVLGGG FIGDF >gi|197325096|gb|DS990370.1| GENE 306 298086 - 298910 802 274 aa, chain + ## HITS:1 COG:no KEGG:WS0007 NR:ns ## KEGG: WS0007 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 5 273 8 281 285 169 36.0 1e-40 MKNRIAVATDFSQKSLMALTKAIYLAKKLQYTLDIIHVVEYSIFHNPKKDKKAGKDALAK FLKNHFPNPEVEMQQFCYVGTIHKEINQHIKERECRLLCIGATGETQHLTDILLGSVTKQ IVKKSPIPVLVAKNETLPDYTNIFSPTDFSEASSKIAKITKKFFPTAHLIFYHMISRPFE IRLGHYGANDEQISNFNQTLENKTKELAKKFLKNFPEHKNEVVLDSGILSYTRLLSVAEN KNASLIALPTSGKVSFFALDVLENSKIDVFIWKF >gi|197325096|gb|DS990370.1| GENE 307 298924 - 300207 780 427 aa, chain + ## HITS:1 COG:jhp1279 KEGG:ns NR:ns ## COG: jhp1279 COG0658 # Protein_GI_number: 15612344 # Func_class: R General function prediction only # Function: Predicted membrane metal-binding protein # Organism: Helicobacter pylori J99 # 25 418 1 395 409 196 37.0 6e-50 MKNLCPPLFINYKERLVFSLFLLGVLICTLSYKYYQFHTLKSQKFPQIQANVILQYQKTK GQKRYFVLKLKSNFGTFYTTSWEDLKNLKNKRVSLKIILEKVNFWDFIKGFYAPSFQLAL MQEEDFRKPLRDFILQQHKTLLMGEYYLSLFLSDPLPLPWRELAQSYGIAHIFAISGYHT GILSALGFLILGWIYTPLHRRYFPYRNRYFDLGIIVLSLLVGYYFLLTQSPSYLRALAMS CIAFFLLFRGLDILRLESFFWSIAILLAFFPSLIFSIGFYFSCLGVLYIFLFFKYFKIPH SFFKKLLYGLSINISTFFLMGIVVYYFFPPFSPLSLSSILLTPLFSLYYPFIFVAHFFGF GGLLDSMLLWWLSLETHTIILQPSFYLFIFCNFLTILAIFYRSAFFALFLLNFIYYLYGI ILYFQIL >gi|197325096|gb|DS990370.1| GENE 308 300301 - 300843 466 180 aa, chain + ## HITS:1 COG:NMB0465 KEGG:ns NR:ns ## COG: NMB0465 COG2928 # Protein_GI_number: 15676376 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Neisseria meningitidis MC58 # 11 179 22 207 233 70 26.0 1e-12 MNELISKISKGIFVILPFLLLFWIFSFVYDFCAAIFYSIFGITNANLAITLLIFAISLAL LYYIGHLVDKNKEFLLIRVTEIIIGKIPVVKSIYSGIKEVLNIFSGKNKEGYLGVAYVDM GNMELMGFITKEDGDHYWVFVPTTPNPTSGFILRIHKDNIRISDLSVSDGFKKIISLGVK >gi|197325096|gb|DS990370.1| GENE 309 300903 - 301697 731 264 aa, chain + ## HITS:1 COG:jhp1278 KEGG:ns NR:ns ## COG: jhp1278 COG0382 # Protein_GI_number: 15612343 # Func_class: H Coenzyme transport and metabolism # Function: 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases # Organism: Helicobacter pylori J99 # 3 264 27 293 294 256 53.0 2e-68 MPFIFIAMLTAAQGWFGWKLLAFGVIASISARNFAMAFNRYADRKFDSTNPRTKNRPSVD GRISPFAMLIFIFINALIFILMGWLINPLCFYLSFPILLILASYSLMKRLTSAAHLVLGL SLGLAPIAGVAAVSGEIPLWSVWLCCGVLFWVAGFDLLYALQDIEHDKKEGLYSIPSVFG VQNTLWISRIFHLLTLIFWALYIISSDSGVFMWIGLLISTIALGYEQFLVSRNFQNIPKA FFAVNGYLGIVFFGFCVLDLIFRN >gi|197325096|gb|DS990370.1| GENE 310 301699 - 302226 699 175 aa, chain + ## HITS:1 COG:no KEGG:Suden_1810 NR:ns ## KEGG: Suden_1810 # Name: not_defined # Def: hypothetical protein # Organism: T.denitrificans_ATCC33889 # Pathway: not_defined # 5 174 4 173 173 134 41.0 1e-30 MEKSRLINTALKIHYDTAHSNAEEFAIEFNKLTQSDEDPIGEWLRLMRAKKGNFDNENTI VLELLVEIYRKIELLEHKIQGETKSYIPLSNEGLITTIGHSCFKIKDSTLQEDTLYYGRV ELPTFPTRIIPIYFVFHTNLALIEKIHARDENEWDSYVASKERALIRSIKSNKGV >gi|197325096|gb|DS990370.1| GENE 311 302229 - 302771 201 180 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149195045|ref|ZP_01872137.1| 50S ribosomal protein L13 [Caminibacter mediatlanticus TB-2] # 6 179 3 155 156 82 26 3e-14 MLNDENILLWIIIGIAIVFILFVFYLYFKERENTKRFNRYEHSIEELNKEVYRLQKKLKD SENHLEKFQQSLKQQIYQETRLEMKNVLDSNLFAQISPLKSTLQNLQEEWKDYQEKMDNK TIILEERIKEFAYTPSNPTNIDEGRIVAMYKDGWSVDSIAKELRIGKGEVEFTLKFANLD >gi|197325096|gb|DS990370.1| GENE 312 302782 - 303027 303 81 aa, chain + ## HITS:1 COG:HP1050 KEGG:ns NR:ns ## COG: HP1050 COG0083 # Protein_GI_number: 15645664 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Helicobacter pylori 26695 # 1 79 1 78 293 77 51.0 5e-15 MLLRVPATSANLGPGFDSLGLALELYNYFSLKPSKFSSIQIHGEGSKNPKLRIDNVFVRI FNEQLKKLIGKTLPFKFTLAS >gi|197325096|gb|DS990370.1| GENE 313 303318 - 303788 279 156 aa, chain + ## HITS:1 COG:HP1050 KEGG:ns NR:ns ## COG: HP1050 COG0083 # Protein_GI_number: 15645664 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Helicobacter pylori 26695 # 10 153 150 293 293 160 52.0 7e-40 MLSCNQVRFIKKNLPSTIEAIVVIPNQSISTHLSRKTLPQKYSQKDAIFNLSHSTLLASA FFEEKWDLLREASMDRFHQFFRMKQIPILFEVQKTALNNGALMSTLSGSGSTFFNLCFKE DTQNLKKALNDKFPRLKVLPLKFDNFGVVFDDEFKF >gi|197325096|gb|DS990370.1| GENE 314 303809 - 304048 161 79 aa, chain + ## HITS:1 COG:no KEGG:NAMH_1544 NR:ns ## KEGG: NAMH_1544 # Name: not_defined # Def: hypothetical protein # Organism: N.profundicola # Pathway: not_defined # 4 65 7 68 83 72 62.0 5e-12 MSNPIRMCVVCRERFEQRQLIRLQYKDSKLSLFNGQGRSFYICKNCQNTPKLINSIARIC KIDKKYKENLKESLKEIFI >gi|197325096|gb|DS990370.1| GENE 315 304048 - 306687 3559 879 aa, chain + ## HITS:1 COG:HP1048 KEGG:ns NR:ns ## COG: HP1048 COG0532 # Protein_GI_number: 15645662 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Helicobacter pylori 26695 # 4 879 5 944 944 792 51.0 0 MEKIRISQIAKEIGKTSKEILQKAQELGFEAKTASSAVTTEQAEELYNYVLSGKSIETKA TKTEAKKIKEESKNQKTAKESGAKKTQTKTSTKTTKETSKDKKAKEITPKENQEIIETLE SPKETTPTNEIQSPKTTAQDNPTIKRTGLRIVKKNNLKSEIQEESIKIQEDKKEPAKTLQ DLLGNLDNDHAEKKERKKKKEKVSLVSKKHNQHKMDLLDNREFQSSDEDEDEGIILFDLS VQDEVDMDEEENEKKATTERIKIQRHNPFMEQGSTRRSNRKKAPKPQKTQEAVQGVVTIP EEIRAYEFAEKIGRSTGDVIKVLFNLGMMVTKNDFLEKDAIEILAEEFGIQIELQNTAQE LDYTQLHEDEDNSKDLVERAPVVTIMGHVDHGKTSLLDYIRNTKIASGEAGGITQHIGAY TITKNNKQITFIDTPGHEAFSEMRARGASVTDIAIIVIAADDGIKPQTIEALNHAKAANA PIIIAVNKIDKPEANTDKVKAEAAELGFTPLEWGGEYEFVHISAKTGEGIDDLLETILLQ AEILELKANPNKPARAVVIESSLEKGKGPVATLIVQNGTLKIGDSIIADTAYGRVRAISD DLGKNITTITPSGVGVITGLNEVPPAGSILLAVENDNIARDYAQKRAAHLRQKELSHSTK VSFDELSSMVAQGQLKNLPVIIKTDTQGSLEAIKGSLEKLQNEEVKVNIIHKGVGGITES DITLAAASSNCVILGFNVRPTGSVKNKAKELGIEIKTYSIIYALIDDIKALLGGLLSPVF EEENTGQAEVRETFNIAKVGTIAGCFVSDGVIQRGIKVRLIRNGVVIHTGNIASLKRFKD DAREVQKGFECGIMLENYNDIQVGDVFETYKEVAKQRTF >gi|197325096|gb|DS990370.1| GENE 316 306691 - 307062 265 123 aa, chain + ## HITS:1 COG:Cj0137 KEGG:ns NR:ns ## COG: Cj0137 COG0858 # Protein_GI_number: 15791525 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Campylobacter jejuni # 4 117 6 119 120 107 50.0 4e-24 MKNIKLERTQSLLKELIPMALANLNDTRLNSLNVIEVKCSKGKYSAQVFLESSFLTKKEQ TEILNQLKKARSLIKEYCLEETGWFRCPDFQFFFDDSLEKENRLDQIFHTIALEKEKRKN DVN >gi|197325096|gb|DS990370.1| GENE 317 307052 - 307483 495 143 aa, chain + ## HITS:1 COG:Cj0138 KEGG:ns NR:ns ## COG: Cj0138 COG0779 # Protein_GI_number: 15791526 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 11 143 3 140 140 107 43.0 1e-23 MLISQDLQTKIQKLVESFDCKLYDIVTLKENDNQILRIFVTKKSSVSLDDCQEISLALSP LLDVEIPESKSYFLEVSSPGIERTLKTKEHYCDAIGELLKVKTFAKEEFKGKLLAVNSDN LELENNIIIPLDSIKKAQTYFIW >gi|197325096|gb|DS990370.1| GENE 318 307477 - 308517 803 346 aa, chain + ## HITS:1 COG:Cj1622_1 KEGG:ns NR:ns ## COG: Cj1622_1 COG0117 # Protein_GI_number: 15792927 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine deaminase # Organism: Campylobacter jejuni # 6 161 14 170 177 136 45.0 8e-32 MVDDNFYLELAIKEAWKTQCQTLPNPAVGALILDHNGRILALQAHQEAGKPHAEVLALKE AYFNLTQDSNILPLEQSIQIHEYLKQKAHSLFHNATLYVTLEPCMHEGKTPSCAALLESL GIKKLIIGTKDPNPKAQGGAEYLQQRGCKIIKAWENKELQKSSILANDLLLPFNSLQKKG NFILFKYACRLNGSINGGQISSKETQIFMHNLRCKLDELVISGKSVLIDNPILDSRFNSL QSQKNPNITILTRKNDFPQTAPLFSIPNRQVRILHSIPNFSGFIMCEGGINLLQNLLPQI DMLLVFLSPTLSTYDLAPHFNANFKLLHSQPIRNDLALWLLPKKEC >gi|197325096|gb|DS990370.1| GENE 319 308497 - 309456 1027 319 aa, chain - ## HITS:1 COG:jhp1147 KEGG:ns NR:ns ## COG: jhp1147 COG0635 # Protein_GI_number: 15612212 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Helicobacter pylori J99 # 1 318 33 344 345 246 44.0 4e-65 MQTLVRDLQNKLLHFGVSKVTSLYIGGGTPSVVESRQYRSIFKILEPYFTQDIEINIEAN PNSLSLEWIRELKQMGVNRLSLGVQSFFVDKLRFLERNHRVDSVFEAIDNATKVGLENLS IDLIYGTPFCNQDLLKQEIQMASKLPINHISAYQLSIDEGSRFFTQKKQEFSGEFAGFAS MGHFVREELRQAGFLQYEVSNYSRGYQSKHNLAYWEQKDYLGVGAGGVGCIAGVRSYGVC GIEDYLKGAEYTQETLSQRDLDLEHLFLGFRSCIGVLEDRITKKKELEILLKEKKVEKRA GRIYAKDYFLGDELALFLW >gi|197325096|gb|DS990370.1| GENE 320 309848 - 310594 1060 248 aa, chain - ## HITS:1 COG:jhp0177 KEGG:ns NR:ns ## COG: jhp0177 COG0479 # Protein_GI_number: 15611247 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit # Organism: Helicobacter pylori J99 # 5 244 1 238 245 373 70.0 1e-103 MSGAVESSNRTLTIRVLKFNPNSAVSKPHFAEYKLQEAHSMTIFIVLNMIREQYDPDLSF DFVCRAGICGSCGMMINGRPRLACRTLTKDFPDGVITLMPLPAFKLIKDLSVDTGNWFNG MSKRVESWIHAQEKSEEHMSQIEDRVEPEVAQEIFELDRCIECGCCIAACGTKLMREDFV GAAGLNRVVRFMLDPHDQRTDADYYELVGDDNGVFGCMSLLACHDVCPKNLPLQSKIAYL RRKMATTK >gi|197325096|gb|DS990370.1| GENE 321 310591 - 312564 2333 657 aa, chain - ## HITS:1 COG:HP0192 KEGG:ns NR:ns ## COG: HP0192 COG1053 # Protein_GI_number: 15644821 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Helicobacter pylori 26695 # 1 657 1 684 714 967 66.0 0 MKIIYCDSLVIGGGLAGLRSAVACQERGLSTIVLSLVPVKRSHSAAAQGGMQASLGNSKM SDGDNEDLHFADTVKGSDWGCDQKVARMFVTTAPKAIRQLAAWGVPWTRIKKGDRTAVIN AQKTTITEEEFRHGLIHSRDFGGTKKWRTCYTADATGHSMLFAVANEALKHNVDIHDRKE AIAIIHKDGRCYGAIVRDLITGELIAYVSRGTLIATGGYGRIYKDTTNAVICEGTGSAIA LETGIAKLGNMEAVQFHPTGLFPSGILLTEGCRGDGGVLRDVDGYRFMPDYEPEKKELAS RDVVARRMLQRIREGKGVKSPYGEHLWLDISILGRKHIETNLRDVKEICECFAGIDPAEK WAPVKPMQHYCMGGIRTNHKGESALKGLFSAGEAACWDLHGFNRLGGNSVSEAVVSGMII GDYFAESCQQTYVDIQTEFVEEFLKKQQAYLESILARENGENVFEIKDKMKQIMGDKVGI FRDGSHLQEAVNELEKLYIRSKNISIKTKRMHANPELEEAYRVPKMLKIALCVAKGALDR TESRGAHSREDFPKRDDLNWLKRTLTSWENPDQTLPTVTYEPLDIATMEIAPGFRGYGAK GMIIENPESLRRQEEIDNIRTKMEAEGKDRYEIQEALMPFELQPYYKARNQRIGDKQ >gi|197325096|gb|DS990370.1| GENE 322 312575 - 312949 340 124 aa, chain - ## HITS:1 COG:Cj0408 KEGG:ns NR:ns ## COG: Cj0408 COG2009 # Protein_GI_number: 15791775 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, cytochrome b subunit # Organism: Campylobacter jejuni # 1 113 117 229 260 93 46.0 8e-20 MKHCDTTLWWIQFLTGFILFFLGSAHLVTILFNSTEINAINSAARFVQGNLAEFYLVLLV VMVLHASIGLYRVIIKWVPLEAPTTAQSNIKRRNIKIAIFSIFIILGVIAFIADFTWIAL GKSL >gi|197325096|gb|DS990370.1| GENE 323 313254 - 313574 360 106 aa, chain - ## HITS:1 COG:HP0193 KEGG:ns NR:ns ## COG: HP0193 COG2009 # Protein_GI_number: 15644822 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, cytochrome b subunit # Organism: Helicobacter pylori 26695 # 1 103 1 102 255 71 44.0 5e-13 MQNDEVVIQSYLKITSERKKRKNPARWDKWQSITGLVLAVFILFHMCFTSSILFGVEAFD AVVAFSEGSLIFGKGIPIITTFVVIIISAFFVTHAFLAMRKFPAAS >gi|197325096|gb|DS990370.1| GENE 324 313815 - 314060 506 81 aa, chain + ## HITS:1 COG:Cj1639 KEGG:ns NR:ns ## COG: Cj1639 COG0694 # Protein_GI_number: 15792944 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin-like proteins and domains # Organism: Campylobacter jejuni # 1 80 1 80 90 91 55.0 4e-19 MLPFSDQKLLKPVEIVIDKVRPMLINDGGNVTLLKIENGKVYVRLEGACKGCPSSSKTLK FGIESALKNEIHPDIELINVG >gi|197325096|gb|DS990370.1| GENE 325 314062 - 314685 742 207 aa, chain + ## HITS:1 COG:no KEGG:WS1689 NR:ns ## KEGG: WS1689 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 13 202 16 195 196 122 38.0 8e-27 MRLTQQCSKYLKKAQESFKKGKYPECLGFCSLASGILSEIQDNPSFIAKNKVFLQMLTML ADMALDHKDEATSLFDYYQIIKDSKTPNAQQEIITMIENFDKNIFALNLAIQSIQESDID KNDGILYKDFQKIADDIGFKEAFEDLMFSTKIIFTHKGDFLFFMQNLVDYGFKEVAMNYF ENIGNILFLDKDFLRIYKQILKTGDYQ >gi|197325096|gb|DS990370.1| GENE 326 314682 - 315986 1437 434 aa, chain + ## HITS:1 COG:HP1494 KEGG:ns NR:ns ## COG: HP1494 COG0769 # Protein_GI_number: 15646103 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Helicobacter pylori 26695 # 11 428 14 438 447 413 51.0 1e-115 MKIVLEDSKDFKFLSDDSREVSKDCAFFVTQSSKKYLKEAQEKGCKFFVTPKELSSYLKL NLQCIGITGTNGKTTTAAMIYSILLDMGYKVGLLGTRGFFINGIQKRPKGLTTPSTLEIY TAINEAKQEGCEFFVMEVSSHAITQNRIEGLEFALKILTNITSDHLDYHKTLENYIATKN SFFSNPNDKKLINKDEKNAQYPLQNTLTYGIESTSTFSIKAYSLKGGITAQITYGSQVAT LDSPLLGKHNLYNALAAIGAVQMLTQKPLQEIANQLENFGGVMGRMQIINQKPLIVVDFA HTEDGMEQIFQSFLHQKIAVLFGAGGDRDKTKRPKMGFCASKYAQKIYITSDNPRNEDPK TIMQEILSGIPQSKRSRVILEENRALAIQKAIAELKEDEVLLVLGKGDETYQIIGDRTLH FDDSEEIKKALKAK >gi|197325096|gb|DS990370.1| GENE 327 315989 - 316603 704 204 aa, chain - ## HITS:1 COG:FN0217 KEGG:ns NR:ns ## COG: FN0217 COG0664 # Protein_GI_number: 19703562 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Fusobacterium nucleatum # 5 204 19 212 217 70 30.0 2e-12 MEKWEVSKEDREIYCKRVYSKSFAKGQRIASGEDECRGLVLIEYGALRAYIISSYAKEIN LFTLHKGDYCILSASCIFKNITFEVNLEFVETSSVWILPSKVFDQLSLKYPKAKQFHLDL VSQRLSKVVDSLSSLAFESLNQRVFNFLLDALKANGDNKKRLYITHGEIANALGSAREAV SRVLKDLEKQNKIILKRGIIEFLD >gi|197325096|gb|DS990370.1| GENE 328 317543 - 320566 2635 1007 aa, chain + ## HITS:1 COG:Cj1523c KEGG:ns NR:ns ## COG: Cj1523c COG3513 # Protein_GI_number: 15792836 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 2 999 3 983 984 969 56.0 0 MKVLGFDIGINSIGWAFVENNELKDCGVRLFTKAENPKTKESLALPRRNARSSRVRLRRR RSRLLSLKHIISKEFGLHYEDYIALDGNLPKAYTGKIESIYKLRYEALSQAISKEDLARV ILHIAKHRGYMNKNQKTSQDSEKGAILSAIKENSNKIKHYQTAGEYFYKELFENLRDGTK EFKNIRNKAMKNEKTGNMESTYYNTILASDLEKELKLILEKQQAYHNYSDTFIKEVLEIA FYQRPLKDFSHLVGSCTFYENEKRACKNSYSAWEFIALGKIINTLESIKKDTGEIFSNEI ITQILKEVLDKGSLSYTKLRKMINLDEKVKFKGLKYDKEGVEKTNLIEFKKLKEFKKALG EHNLERKTLDEIATHITLTKDENQLKKQLEQYALSQNQIDALAELDFNDHINLSFKALYE ILPLMEKGKRYDEACNELGLKAKTSNQKSEFLPAFCDSIFAQELTNPIVNRAISEYRKVL NRLLKKYGKMHKIHIELARDAGLSKEARNKIEKEQKENKDINDKAEKTCKEFGLKPNAKN ILKIKLWREQGEICAYSGKKITIDDLKEDKALEVDHIYPYSRSYDDSYNNKVLVFIKENQ LKLNQTPYEAFGSNQEKWSKIQVLAQKLPYKKKNRILDENFKNKDQIEFISRNLNDTRYA TSLIAKYTKEYLEFLPLSDDEDISLKSGEKGSKTHVQTMNGMLTSVLRHAWGFSQKDRNN HLHHALDAIIIAYSTNSIIKAFSDFKKNQEILKAKLYAKKLTSEEYKNQSKFTGFEKYRS KILEKLDSIFVSKPPNKNTKGALHEQTFYSYQDILEEYKTQEGLKRALECGKVRKIGTKY VVNDRMVRLDIFKKDNKFYGIPIYTMDFALGVLPNKVVTIGTDKDKIKKEWKTIDETYEF CFSLYKGDLVLIQKKEMQESEFAYYNGFDISSASISLEKHDNKFENLTENQKLLFPKAKE GDVEVRGIGIQGLKVFKKYMVTPLGEIQETRTEARQNIQPRKKHGLR >gi|197325096|gb|DS990370.1| GENE 329 320553 - 321443 372 296 aa, chain + ## HITS:1 COG:Cj1522c KEGG:ns NR:ns ## COG: Cj1522c COG1518 # Protein_GI_number: 15792835 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Campylobacter jejuni # 1 296 1 294 296 358 66.0 9e-99 MAYDEAFKSILVSSKVKLSLELEHLVIQQDKNIAKIFLKDINFIILESLQATLTSKLLST LAKHKIILLTCDEFHHINGIFSPFLGHFMSAKIAKMQIQVSLQRKAILWQKIIKNKISNQ AHILRQAHHTTESNDLFKLAKDVTLNDAKNTEAKAAILYFKTLFGKDFTREKICFINFAL NYGYAIVRANIIRAVCISGLLPWYGIKHDNIYNDFNLCDDLIEVFRPLVDFYVLHLKAPK DCEFLDKENKQKLINILQKEVILENKTYPLNRAINFYVQNFKNALLENENLIKVKF >gi|197325096|gb|DS990370.1| GENE 330 321461 - 321820 254 119 aa, chain + ## HITS:1 COG:Cj1521c KEGG:ns NR:ns ## COG: Cj1521c COG3512 # Protein_GI_number: 15792834 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 1 103 7 109 143 140 71.0 7e-34 MRILLMFDMPTKSKKDQKNATKFRNALIKLGFFMMQFSVYVRICKGLMSAKSTIKSIEKI LPPCGNIRVLIITEKQFDNMQILLGEASFNEQINNSKNLTLFEWSENTQDYKYSKESIK >gi|197325096|gb|DS990370.1| GENE 331 322831 - 323181 375 116 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224419210|ref|ZP_03657216.1| ## NR: gi|224419210|ref|ZP_03657216.1| hypothetical protein HcanM9_08048 [Helicobacter canadensis MIT 98-5491] # 1 116 10 125 125 187 100.0 2e-46 MSEILGGAYAQQAIRKQYGVVDNFGNNIYYTAYYEVRLETGDSAYFNLGSDYYAAIATTY NFKTNKITSEVVKINKNNPSNVKTLDFQNNVIGRIKNYKAVESWIKQDKINIKYFK >gi|197325096|gb|DS990370.1| GENE 332 323269 - 324387 849 372 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224419211|ref|ZP_03657217.1| ## NR: gi|224419211|ref|ZP_03657217.1| hypothetical protein HcanM9_08053 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1500 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1500 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 372 1 372 372 544 100.0 1e-153 MQINTSNYLNLYSNSYNINSKESTQSISQNFNTTENLSQNNKNNVERDTKQIISEILSNK EELPAYISHSYHQNIDNIEKLQNLAQAHLQFIETYNGVLPTELEAKQSIQFLMQEAEEIL SVAYNKQPNSEEFRNLLGIFSFAQDSINDFSNNKQKLLNLLKQGQSSLEYATSDEFYHKL FTKANGSNTQTLEEIDRLSKINEEQGFLRDYNVNATLISSYLQDFFTMANDFGFISKDKE NKIYQELQTSAIYLGSQGGNIGNSFKIENFTISWEGNSTLFNAYLNGSKISIASQSTSND FLASLTSNFDTTQSIFDILNQKEKLEKENQDLKNKQAIEAYSYGNGYSSTLTSKTSKEID SFINQMIKEAKA >gi|197325096|gb|DS990370.1| GENE 333 324396 - 324956 489 186 aa, chain + ## HITS:1 COG:Cj0058 KEGG:ns NR:ns ## COG: Cj0058 COG3271 # Protein_GI_number: 15791450 # Func_class: R General function prediction only # Function: Predicted double-glycine peptidase # Organism: Campylobacter jejuni # 1 172 4 180 199 157 44.0 1e-38 MLLLRIFLLVFITNFAFAFSVKSLQELHNQNVIRQQYEESCGASALATLLNFFEFRQYSE QDILAFLNQKTDMLSFKELQEVANTLGYATKGFQLQREILEQTSYPLLVRIENDPRFPHF VVIINHKGDFIQVFDPNFGQYKATKKEFYSVWDRNHTGGFALVIAKNENSKPMIKDLEFP NEAFFK >gi|197325096|gb|DS990370.1| GENE 334 325050 - 325526 670 158 aa, chain + ## HITS:1 COG:no KEGG:CJE0054 NR:ns ## KEGG: CJE0054 # Name: not_defined # Def: HmcD domain-containing protein # Organism: C.jejuni_RM1221 # Pathway: not_defined # 2 150 1 148 284 155 54.0 5e-37 MLKRILVSFFGLISISFASDPITLDSLFKKQIGLRSITSVSYLSSGNAYIYNMYPTLVAQ PDTKTWTDTKQVSISQTFIYTLTPKFDILVAGNGSYKQNEYVSNFGFSFESERSFDFDSL WIGGIYTGDTIGGIFVPQVTLQGGVIQREEHFDVLVPS Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:21:58 2011 Seq name: gi|197325095|gb|DS990371.1| Helicobacter canadensis MIT 98-5491 supercont2.4 genomic scaffold, whole genome shotgun sequence Length of sequence - 53808 bp Number of predicted genes - 61, with homology - 60 Number of transcription units - 23, operones - 12 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 322 - 465 64 ## gi|224419214|ref|ZP_03657220.1| hypothetical protein HcanM9_08068 2 1 Op 2 6/0.000 - CDS 425 - 1795 886 ## COG1479 Uncharacterized conserved protein 3 1 Op 3 . - CDS 1811 - 2044 470 ## COG1479 Uncharacterized conserved protein - Prom 2067 - 2126 5.6 4 2 Op 1 . - CDS 2221 - 2661 254 ## COG1238 Predicted membrane protein 5 2 Op 2 . - CDS 2673 - 3449 990 ## COG0107 Imidazoleglycerol-phosphate synthase - Prom 3475 - 3534 9.5 + Prom 3462 - 3521 11.5 6 3 Tu 1 . + CDS 3553 - 4560 1043 ## COG0180 Tryptophanyl-tRNA synthetase 7 4 Tu 1 . - CDS 4569 - 5510 1023 ## COG1052 Lactate dehydrogenase and related dehydrogenases - Prom 5530 - 5589 4.1 + Prom 5485 - 5544 8.2 8 5 Tu 1 . + CDS 5571 - 5825 437 ## COG0548 Acetylglutamate kinase + Term 5966 - 6033 31.1 - Term 5794 - 5860 16.7 9 6 Op 1 . - CDS 6010 - 6354 591 ## WS0529 hypothetical protein 10 6 Op 2 3/0.000 - CDS 6364 - 7053 964 ## COG0775 Nucleoside phosphorylase 11 6 Op 3 . - CDS 7057 - 7977 1165 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 12 6 Op 4 . - CDS 7987 - 9552 1641 ## COG0018 Arginyl-tRNA synthetase 13 6 Op 5 . - CDS 9555 - 9803 350 ## WS0187 hypothetical protein 14 6 Op 6 . - CDS 9841 - 10638 361 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 15 6 Op 7 44/0.000 - CDS 10622 - 11353 210 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 16 6 Op 8 49/0.000 - CDS 11350 - 12150 799 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 17 6 Op 9 38/0.000 - CDS 12150 - 13082 686 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 18 6 Op 10 . - CDS 13082 - 14509 1661 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 14698 - 14757 8.1 + Prom 14708 - 14767 13.1 19 7 Tu 1 . + CDS 14793 - 15230 717 ## COG1017 Hemoglobin-like flavoprotein + Term 15239 - 15296 8.9 - Term 15309 - 15353 4.2 20 8 Tu 1 . - CDS 15358 - 16383 1359 ## COG0059 Ketol-acid reductoisomerase - Prom 16530 - 16589 80.4 - Term 16501 - 16567 30.0 21 9 Op 1 . - CDS 16705 - 16920 337 ## COG1555 DNA uptake protein and related DNA-binding proteins - Prom 16944 - 17003 6.0 22 9 Op 2 3/0.000 - CDS 17028 - 18545 1123 ## COG0606 Predicted ATPase with chaperone activity 23 9 Op 3 . - CDS 18549 - 19055 769 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 19144 - 19203 80.4 24 10 Op 1 . - CDS 19353 - 20375 1047 ## Suden_2035 diguanylate cyclase 25 10 Op 2 29/0.000 - CDS 20386 - 20976 840 ## COG0740 Protease subunit of ATP-dependent Clp proteases 26 10 Op 3 2/0.200 - CDS 20973 - 22277 2012 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) - Prom 22301 - 22360 4.5 27 10 Op 4 . - CDS 22369 - 25746 3017 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins - Prom 25940 - 25999 5.0 - Term 25911 - 25955 -0.6 28 11 Op 1 2/0.200 - CDS 26009 - 27082 1042 ## COG1377 Flagellar biosynthesis pathway, component FlhB 29 11 Op 2 . - CDS 27075 - 27632 619 ## COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A - Prom 27863 - 27922 6.8 + Prom 27513 - 27572 7.2 30 12 Tu 1 . + CDS 27725 - 28687 1048 ## COG2896 Molybdenum cofactor biosynthesis enzyme + Prom 28715 - 28774 10.6 31 13 Op 1 . + CDS 28800 - 29237 755 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) + Prom 29327 - 29386 7.3 32 13 Op 2 . + CDS 29496 - 30179 975 ## WS0773 hypothetical protein 33 14 Tu 1 . - CDS 30230 - 31321 1341 ## COG0232 dGTP triphosphohydrolase - Prom 31346 - 31405 8.8 + Prom 31323 - 31382 7.6 34 15 Op 1 . + CDS 31402 - 32103 842 ## COG0491 Zn-dependent hydrolases, including glyoxylases + Prom 32128 - 32187 3.3 35 15 Op 2 . + CDS 32209 - 32544 186 ## + Term 32778 - 32844 30.0 - Term 32578 - 32647 19.3 36 16 Tu 1 . - CDS 32833 - 34023 1344 ## COG1620 L-lactate permease - Prom 34068 - 34127 13.6 + Prom 34163 - 34222 8.0 37 17 Op 1 17/0.000 + CDS 34252 - 34980 706 ## COG0247 Fe-S oxidoreductase 38 17 Op 2 13/0.000 + CDS 34991 - 36433 1410 ## COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain 39 17 Op 3 . + CDS 36426 - 37073 707 ## COG1556 Uncharacterized conserved protein 40 17 Op 4 . + CDS 37091 - 37762 673 ## COG0603 Predicted PP-loop superfamily ATPase - Term 37560 - 37607 1.8 41 18 Op 1 . - CDS 37779 - 38162 541 ## COG2346 Truncated hemoglobins 42 18 Op 2 . - CDS 38172 - 38612 383 ## COG3399 Uncharacterized protein conserved in bacteria + Prom 38629 - 38688 8.7 43 19 Tu 1 . + CDS 38714 - 38842 103 ## gi|253826971|ref|ZP_04869856.1| putative transcriptional regulator + Prom 38866 - 38925 80.4 44 20 Tu 1 . + CDS 39008 - 39382 269 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases + Term 39483 - 39523 -0.9 - Term 39476 - 39506 2.0 45 21 Tu 1 . - CDS 39507 - 41762 3409 ## COG1749 Flagellar hook protein FlgE - Prom 41801 - 41860 5.3 - Term 41828 - 41874 9.1 46 22 Op 1 . - CDS 41993 - 42667 802 ## COG0020 Undecaprenyl pyrophosphate synthase 47 22 Op 2 . - CDS 42668 - 43426 819 ## WS2059 hypothetical protein 48 22 Op 3 . - CDS 43423 - 44643 1176 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 49 22 Op 4 . - CDS 44646 - 46463 1926 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 50 22 Op 5 . - CDS 46464 - 46928 410 ## WS2063 hypothetical protein 51 22 Op 6 . - CDS 46895 - 47416 676 ## COG1246 N-acetylglutamate synthase and related acetyltransferases 52 22 Op 7 3/0.000 - CDS 47413 - 48042 683 ## COG0218 Predicted GTPase 53 22 Op 8 . - CDS 48039 - 48506 551 ## COG1934 Uncharacterized protein conserved in bacteria 54 22 Op 9 . - CDS 48503 - 49078 485 ## WS2068 hypothetical protein 55 22 Op 10 . - CDS 49065 - 49556 665 ## COG1778 Low specificity phosphatase (HAD superfamily) 56 22 Op 11 . - CDS 49553 - 50125 647 ## COG0131 Imidazoleglycerol-phosphate dehydratase 57 22 Op 12 3/0.000 - CDS 50139 - 50942 652 ## PROTEIN SUPPORTED gi|223039866|ref|ZP_03610150.1| 30S ribosomal protein S16 58 22 Op 13 . - CDS 50946 - 52019 1229 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) - Prom 52044 - 52103 7.8 59 23 Op 1 . - CDS 52111 - 52584 310 ## gi|253826985|ref|ZP_04869870.1| hypothetical protein HCAN_0332 60 23 Op 2 3/0.000 - CDS 52587 - 53219 592 ## COG2121 Uncharacterized protein conserved in bacteria 61 23 Op 3 . - CDS 53230 - 53796 274 ## PROTEIN SUPPORTED gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 Predicted protein(s) >gi|197325095|gb|DS990371.1| GENE 1 322 - 465 64 47 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224419214|ref|ZP_03657220.1| ## NR: gi|224419214|ref|ZP_03657220.1| hypothetical protein HcanM9_08068 [Helicobacter canadensis MIT 98-5491] # 1 47 1 47 47 65 100.0 1e-09 MGIKKITDLKEVYDLSTREKKEWLKEDIESRNKEIYQRLYEFFTKHI >gi|197325095|gb|DS990371.1| GENE 2 425 - 1795 886 456 aa, chain - ## HITS:1 COG:NMA2230 KEGG:ns NR:ns ## COG: NMA2230 COG1479 # Protein_GI_number: 15795099 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Neisseria meningitidis Z2491 # 30 449 123 522 571 147 27.0 4e-35 MTLLFRAFYEHFKNEGKNVKQGYLNGFGRCIWKFDSADEELYFDEMHLRSEVEFDDNKEE FAKLLSQDIENLGDLKSKYAKNYTFFYDKISSFKQDTATQWEPFCKMLLGKKLFVLFITC DSQESAMTIFNTLNSRGMPLSNADILKGYIYKHKKTDKDKKEFAQSWKNLYSKVDDDKEI KSLDFLFLQFMHIIRAQHEDFDTTTQSVLNFFTKKDKKVYYGAFGNWLYKDETMPFILHL ADFWLNPQDYLSRKSTNYLKILNLFQNDAWKSFVSCLVWKNHHKFNQDDFNIAKFSEDFD KYLPKLTTISSLLLLNNNATINTTKEIIFKMNVALKTNDWSNIQIKQQMPNFETFLQNLE NMDSRKIKFILFLYANIYADFTENVNTAKLQIEHILPKQWQNANFNGWNENLHNQYLEQI GNKILLPDKINIKCSDHFFAKKQDGYKKNHRLKRSL >gi|197325095|gb|DS990371.1| GENE 3 1811 - 2044 470 77 aa, chain - ## HITS:1 COG:NMA2230 KEGG:ns NR:ns ## COG: NMA2230 COG1479 # Protein_GI_number: 15795099 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Neisseria meningitidis Z2491 # 1 77 4 82 571 64 46.0 4e-11 MQFESKKEYVAKLLGEEDTIFIIPDYQRPYSWGQDECEQLWTDIVNVFGDGENIDEYFLG SIVTYKNDQKLLEIIDG >gi|197325095|gb|DS990371.1| GENE 4 2221 - 2661 254 146 aa, chain - ## HITS:1 COG:Cj0341c KEGG:ns NR:ns ## COG: Cj0341c COG1238 # Protein_GI_number: 15791709 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 7 144 9 147 147 94 51.0 5e-20 MQTLESLGLFGLFCICFISSSLYPLGSEVFVSFFTTLDYPLFLVWSVATIGNTLGSLSTY AIGYWGENFILAKHFTKPRNLEKYLIFINKYGFIGAFFSFLPFLGDIFAFVLGATRYPFL KATFFIFLGKGLRYYLLIYLTKLFYF >gi|197325095|gb|DS990371.1| GENE 5 2673 - 3449 990 258 aa, chain - ## HITS:1 COG:aq_181 KEGG:ns NR:ns ## COG: aq_181 COG0107 # Protein_GI_number: 15605750 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate synthase # Organism: Aquifex aeolicus # 8 257 2 250 253 310 61.0 2e-84 MDLAKPTLTKRIIPCLDIKDGRVVKGVNFVGLQDAGDPIEVAKRYNDEGADEITFLDITA THEGRNTTIEMVKRVAKEIFIPLAVGGGISSLEDIYKLLNAGCDKVSLNSSAIANPNFIT QSAKRFGSQCIIVAIDAKKKATGKGWEVYTHGGRKNTGIDLEEWALEAYNRGAGEILLTS MDCDGTKNGYDLVQLQKISKLVHIPLIASGGAGSKEHILEAFLNGADAALAASIFHYQEI QIADLKHFLKSKGIPVRI >gi|197325095|gb|DS990371.1| GENE 6 3553 - 4560 1043 335 aa, chain + ## HITS:1 COG:HP1253 KEGG:ns NR:ns ## COG: HP1253 COG0180 # Protein_GI_number: 15645867 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Helicobacter pylori 26695 # 3 335 10 339 339 420 61.0 1e-117 MQTKITTKQPRVFSGIQPTGDIHLGNYLGAVKNWVDRQEEYENIFCVVNSHAITIPQNPK ILREKTFELCAMLLACGIDPQKSTLFIQSEIQEHTSLAWLLTCITPMGDLSRMTQFKDKS QKNPKSIFAGLFNYPNLMSADILLYKSEFVPVGEDQKQHIELARDTAMRFNRDYGEIFVV PQPLIQKEGARIMGLDDPTKKMSKSSGDKPNHLIALLDSPDEIMRKFKKATTDSEGIIAF DENRAGVYNLLNIYQCFSKESKEEIEKFFVGKGYGELKTKVAEVVIEGLRPIRESYERLF SDFAYLQEILQKGSETAREIAQKTYQEAKEKMGLI >gi|197325095|gb|DS990371.1| GENE 7 4569 - 5510 1023 313 aa, chain - ## HITS:1 COG:HP0096 KEGG:ns NR:ns ## COG: HP0096 COG1052 # Protein_GI_number: 15644726 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Helicobacter pylori 26695 # 6 313 8 312 314 290 49.0 2e-78 MQNNIVFLDALSLGENNIKESLQSIGHYTEYPTTSPNETLNRCKGANIILTNKVVLNKEI LMALKDTLKLVCITATGTNNVDLQTAKDLGIEVKNVAGYSTKGVAQHTLMMALALSAKLP FYDSYCKSGAYAKSPIFTNLSTPLELLDNKKWGIIGLGTIGLEVARLASAFGTQVSYYST SGKNQNPNYPCITLESLLKESDVISIHAPLNPSTQNLLNKNNLSLIKEGGILINVGRGGI VNELELAEEMQKRKIYAGFDVFSQEPMVENHPFLNPKIADQFILTPHNAWGYESSKELLI KGVLENIQNFLKA >gi|197325095|gb|DS990371.1| GENE 8 5571 - 5825 437 84 aa, chain + ## HITS:1 COG:PA5323 KEGG:ns NR:ns ## COG: PA5323 COG0548 # Protein_GI_number: 15600516 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate kinase # Organism: Pseudomonas aeruginosa # 5 82 9 86 301 79 50.0 1e-15 MHNYSKIVSILLDALPYIKIFRGSKIVIKYGGAAQINPELKEQFAMDIVLLYMLGIKPII VHGGGKRINELLGALNIESEFLAS >gi|197325095|gb|DS990371.1| GENE 9 6010 - 6354 591 114 aa, chain - ## HITS:1 COG:no KEGG:WS0529 NR:ns ## KEGG: WS0529 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 2 112 5 115 161 86 43.0 3e-16 MRLILVRHAKAEDRKQWEGEDDLKRPLTLKGKKQAKKIAKYLHKRYPEVDAIISSLALRA CDTAKYIAKLQKHSTFFLSPYLNPEVGIDGYNKHQDEIEEDWQTLVIVGHEPTS >gi|197325095|gb|DS990371.1| GENE 10 6364 - 7053 964 229 aa, chain - ## HITS:1 COG:HP0089 KEGG:ns NR:ns ## COG: HP0089 COG0775 # Protein_GI_number: 15644719 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Helicobacter pylori 26695 # 3 228 5 231 231 237 51.0 2e-62 MTIGILGAMQEEISPLLDHYKTYETIAFGGNTFYKVSLGDKTLIIACSRIGKVHSSLSAA TMILYFGCNKIIFNGVAGGINPNYKIGDLVIGEKLCQHDVDITIFGHPFGYFSEGKIFTQ TNEALNKLAKEVAKESNITIHQGTIATGDQFVSSKERKEWIKKEFNADAIEMEGASVAVV CDNLNTPLCVIRAISDNAGDEALISYEEFLEHSAKQSAALVIKMIEKIN >gi|197325095|gb|DS990371.1| GENE 11 7057 - 7977 1165 306 aa, chain - ## HITS:1 COG:jhp0083 KEGG:ns NR:ns ## COG: jhp0083 COG0331 # Protein_GI_number: 15611154 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Helicobacter pylori J99 # 1 305 1 307 309 291 51.0 1e-78 MNKAVIFPGQGCQSIGMGKSLFENSQEVRELFEKASDLLKEDMQKLCFEENDKLNLTRYT QPAILLVSYSVFHLIKPKINGEINLALGHSLGEFSALCASGTLSFEEAIKLVSQRGSLME ESCKKQQAGMMVVLGLEDSMLEELCEKKRNVGLKVWCANYNGDGQMVLAGSKEDLSELEV ELKGLGAKRALMLPMSVASHCPILENMCKEFEMLLEKSLQESFAFPIVSNVTARPYNTKT QALELLSKQLISPVLYKQSIRENDSKVELFIECGGNVLKGLNKRLTQKETLSLQTYDEIQ NFLQKD >gi|197325095|gb|DS990371.1| GENE 12 7987 - 9552 1641 521 aa, chain - ## HITS:1 COG:Cj1175c KEGG:ns NR:ns ## COG: Cj1175c COG0018 # Protein_GI_number: 15792499 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Campylobacter jejuni # 1 521 5 528 530 533 53.0 1e-151 MYYKIKKIVDETLGITSVLEQPRDKKFGHFALPTFSFAKSFKKSPQDIAQDFAKKLESLP EISSLNVVGGYVNFFLSDLFLEQCTQDFLKPHQKNGEKILLEYVSANPTGPLHIGHARGA ILGDSLCRIGRHLGYSITTEYYINDAGSQIENLGKSIYYAGRHLFFDDSYDLPEGCYKGE YILDLAKEAKDCFGIECFENEKFIEKLSLFGKDKMLEEIKSNLAEAGIVFDNFVSEKELY KQWDGTLKSLESHNGIYKQEGKIWIKSTEFGDEKNRVVVRENGEPTYLAGDIIYHKNKFE RKFDRYINIWGADHHGYIQRVKAAIEFLGYDSNQLEILLSQMVALLKGGESYKMSKRAGN FILMKDIIEDVGSDALRLIFLSKRADTHLEFDIEDLKKQDSSNPVYYINYAHARIHTLFS KSNYTLETLQKDFSNLSESLRDLLVLALNLSKTLEDSFIQRNPQKVVEYLRTLSSEFHRF YNEEKILNTPNEKTILSVLSMVAQSLNAGLDLLGVKAKKSM >gi|197325095|gb|DS990371.1| GENE 13 9555 - 9803 350 82 aa, chain - ## HITS:1 COG:no KEGG:WS0187 NR:ns ## KEGG: WS0187 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: Protein export [PATH:wsu03060]; Bacterial secretion system [PATH:wsu03070] # 3 81 4 78 80 70 56.0 3e-11 MGPSVQQLLIILLIIIVLFGAKKIPDLAKGLGSGIKNFKKAIKDDEENTDIHTTEAKPDK IQNDSNTKETTASTNNNETTKV >gi|197325095|gb|DS990371.1| GENE 14 9841 - 10638 361 265 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 2 227 9 241 329 143 38 2e-33 MEKLLEVKQLTQSYKKGSFFSQSKEEVILENISFSLTQGKNLGILGENGAGKSSLVRILL GLKKAKSGEVIIMGKRYFKGSDQEIRQNIQGIFQDPQSSLNPRWSARECILEGLENYHCI TNKKQQSEELAKFVGINPLDLDKKSLHFSGGEQQRIAIARTIALKPKILILDEAFSNLDV HLQMQMIENLKKIQQELTLTLIVISHDLRVILQLCQEIILLKKGKIVFQTSKQEGIEKAM LRDKTGVFKEFLEASFQNTFLQVEL >gi|197325095|gb|DS990371.1| GENE 15 10622 - 11353 210 243 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 226 1 241 245 85 26 6e-16 MISLQDFSLFAHKKQILHHLNLNLKSNQRVALLGESGSGKSLLARAILGLLPQDFTSSGT LQSDERFGVILQNPASCFDSIFTLRQHFLETLKAHHLNTLKEDSWGLKEVGLNPNILDSY PFELSGGTLQRLMIALSICIQPSFIIADEMTSNLDCLGTLQISNLLLSLQKKMGFGLLFI THDLSLAAKMAETIIVLHQGIIIEQGDKNQILTNPKHPKTQELLRENQKLLNTPWGDFRG KIT >gi|197325095|gb|DS990371.1| GENE 16 11350 - 12150 799 266 aa, chain - ## HITS:1 COG:BMEII0489 KEGG:ns NR:ns ## COG: BMEII0489 COG1173 # Protein_GI_number: 17988834 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Brucella melitensis # 3 257 18 272 284 238 49.0 6e-63 MRLKIALFLALCLIFIALFAPWIFPYDPTLGDLEQKFLPPSMQHWLGTDHLGRDVLSRLG YGARISLFSVFVISLLIALSSFLIGIIAGYKGGFLDSILMRICDVFLTFPTFILALFFIA IFGVGITNVILAIVLTHWAWYARMIRSITLEIKTQNHIQAAKMLGGNDFMIIIRHILPVV FLQMIILITLDFGHMLLHISGLSFLGLGVQAPMPEWGVMIQDSAPYIMEHPILMLYPGLC IFISVAIFNTLGEALRDKYSLPMEKQ >gi|197325095|gb|DS990371.1| GENE 17 12150 - 13082 686 310 aa, chain - ## HITS:1 COG:ECs4344 KEGG:ns NR:ns ## COG: ECs4344 COG0601 # Protein_GI_number: 15833598 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Escherichia coli O157:H7 # 1 306 1 307 314 260 47.0 3e-69 MLLFLCKRILLLIPILLAVSFIVFGILRLSPIDPAFAYLTQSQIPPTKEALEATRIELGL NLPFFEQYFLWLKNLLSLDFGISYVTKRPVLEDILYYLPTTLNLALLSMLVVIFFGVFLG ILGAVKKGSWVDKSLNAFAFFGVSIPSFWFGFLLIYLFTLKLGILSPYEDFSLKSYILPV ITLSLMSIAINMKLVRVSYLEHQSQRSVLYAYARNLPKQTIQKHILKNSLLPIVTSLGMH FGEILGGAVVVEILFGLPGFGRYAVNAIYSHDYPVIQAFMMIMVVIFVSLNLLVDILLAY LNPKIRYENA >gi|197325095|gb|DS990371.1| GENE 18 13082 - 14509 1661 475 aa, chain - ## HITS:1 COG:nikA KEGG:ns NR:ns ## COG: nikA COG0747 # Protein_GI_number: 16131348 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Escherichia coli K12 # 1 474 34 520 524 365 39.0 1e-100 MNAGNLNPHLYSPNQMYAQMMLYQSLVRFDGKKFVGEIAKSWKISKDGKTYTFFLKDNLA FSDRSPLDAYAIEANFNAILDNKARHLWLGITQKIAYAKALDSKTFELKLTTPYIATLNE LSLPRPFRFIAPSAMINNSTKNGIKAPIGSGAWILKESKLGSYDIFIPNPNYQGKKSEIS KLTMKILPDPNSRILAFESGSLDILVGKDSLSRENFLRLSKNPKYQTITSSPQGTFHLVI NANNQRPTHDINLRQALLESINRQAIWEKILLQIDKPAHSLFNPQLEFCSTQPQAPAFNP KNAQNYLLKSTYKQEALNLVYIANNPIQKTIAEAIQNDLSKIGIKIKLNATEPIYFFQRQ KNGDFDLIFNETWGNPYDPHSFIASMLTPSHADFAAQKDLDSRKEIETLIHTILSQTNPD ILQANYTKLLNLLNESAIYLPFSYGVVLGIYNKERIKSYQMGVMETEFLFENMEF >gi|197325095|gb|DS990371.1| GENE 19 14793 - 15230 717 145 aa, chain + ## HITS:1 COG:BH1058_1 KEGG:ns NR:ns ## COG: BH1058_1 COG1017 # Protein_GI_number: 15613621 # Func_class: C Energy production and conversion # Function: Hemoglobin-like flavoprotein # Organism: Bacillus halodurans # 2 142 6 146 154 143 50.0 9e-35 MLDSHTKEIVKSTIPALKQYGEDITKVFYRELFGRYPQVQGMFDMEKQKNGKQPKALAMA ILNAANNIDDLEKIRRSVESIGKTHVSLNVLPEHYPLVGECLLVAIKEVLGDAANDEVIE AWGKAYGEVADFYIHIEEEMYKAQK >gi|197325095|gb|DS990371.1| GENE 20 15358 - 16383 1359 341 aa, chain - ## HITS:1 COG:Cj0632 KEGG:ns NR:ns ## COG: Cj0632 COG0059 # Protein_GI_number: 15791992 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Ketol-acid reductoisomerase # Organism: Campylobacter jejuni # 1 341 1 340 340 495 72.0 1e-140 MALQVYYDKDCDLGLIQKKKVAIIGFGSQGHAHAENLRDSGVEVVIGLYKGGKSWAKAEA KNFKVLEVSEATKWADVVMILIPDELQADVFERDIKANLSEDKIIAFGHGFNIHFGQIKA PKGVGVIMVAPKAPGHTVRSEFVKGGGIPDLIAVEQDTSKGDAKAIALSYASAIGGGRSG IIETTFKDETETDLFGEQAVLCGGVSSLVKAGFETLVEAGYPEEMAYFECLHELKLIVDL IYEGGLANMRYSISNTAEYGDMVSGPRVINAESKKAMKEILSDIQEGRFAKDFILERKAG YARMNAERKNLANHKIEQVGEKLRAMMPWIGANKLVDQNKN >gi|197325095|gb|DS990371.1| GENE 21 16705 - 16920 337 71 aa, chain - ## HITS:1 COG:Cj0011c KEGG:ns NR:ns ## COG: Cj0011c COG1555 # Protein_GI_number: 15791410 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Campylobacter jejuni # 1 66 1 67 79 64 61.0 4e-11 MKLLVALFLALSFLFGAVDLNKANKEELMSIKGIGEAKAQAIIDYREKTPFKSIDDLKNV KGFGSKSKLAS >gi|197325095|gb|DS990371.1| GENE 22 17028 - 18545 1123 505 aa, chain - ## HITS:1 COG:jhp0728 KEGG:ns NR:ns ## COG: jhp0728 COG0606 # Protein_GI_number: 15611795 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATPase with chaperone activity # Organism: Helicobacter pylori J99 # 3 505 2 506 506 490 51.0 1e-138 MALNLLYCAAQEGLEAKKVEVEVSFTKALPSFQITGLAGNAIQESRQRVQSSLLSNDFKF PPLKISVNLSPSDLPKQGSFYDLPIALLIALYGHCDFTFDDKKPQKYFAFGELGLDGRVK DTPSIYPLLFSLLSQQENQDSIFILPKSAKDFYSTLPNLRAYFVETLKEAIEILKCPPPL ESTTTNLPFDYETIGDEKYYLNTHFPLDFKDIIGQERAKRAALIAACGFHNILFEGSAGS GKSMIASRIPYILPPLTLSEILQLASTTLKISAQRPFRNPHNSATKAAILGSAVGQNVKY GEISLAHLGVLFFDELPHFPKNLLESLREPLENHHFTISRLQAKITCPTDFMFVGAMNPC PCGNLLSVSKECRCNQKEINAYKNKISDPFWDRLDLFVSMQEGMQTRHTITSKEMHTQIL NAFRFQKTRNQKCFNARLEGENLKSFCILGDQEKEILKLAKERFSLSSRGVDKILRTARS IADLALSEKISKEHLLEALSYRKVS >gi|197325095|gb|DS990371.1| GENE 23 18549 - 19055 769 168 aa, chain - ## HITS:1 COG:jhp0729 KEGG:ns NR:ns ## COG: jhp0729 COG0242 # Protein_GI_number: 15611796 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Helicobacter pylori J99 # 1 167 3 169 174 187 58.0 1e-47 MLEVITYPNPILRQISQPIEVFNESLHELLDSMYEVMLQKNGVGISAIQVAKPIRALLIC LPDEEGNQHKEDLLEIINPQILEKDGEIIFNEGCLSVPEFYEEVKRASSLKVAYQDRYGN PKEMEAKDYLAVALQHEIDHLNGILFIDKLSILKRKKFEKELKQKRKG >gi|197325095|gb|DS990371.1| GENE 24 19353 - 20375 1047 340 aa, chain - ## HITS:1 COG:no KEGG:Suden_2035 NR:ns ## KEGG: Suden_2035 # Name: not_defined # Def: diguanylate cyclase # Organism: T.denitrificans_ATCC33889 # Pathway: not_defined # 34 336 23 318 349 177 34.0 7e-43 MKEDLEGANLPNFESNGIEEKPSSFDSIPSFDSTDSNSSIQSQEELKPANDDSIESYGTQ VIQALLSNGIPPTPCNYKIYFEKLLEDKPQDFKNNAMQFLQAEFIPSEKQALLENKVLKA QNYMVSTLRLVGALFSNFQLLQNILKKHEREIDSVQNANILQNVITLFEKELKKIGEIST KQLKDIKMSYDKTAMAIDNITQEIICDSRYNIYNQRFLETKVQMECQESAIDKHKSSLLL LKITKNLEKKVTSEKNAILINKTITKILQKIANRSDILAYYGEGIFGLLLNHRDKESAKR FANNLSEKVVETNIYLGDEELSLSICSGICEINEKSKSKG >gi|197325095|gb|DS990371.1| GENE 25 20386 - 20976 840 196 aa, chain - ## HITS:1 COG:Cj0192c KEGG:ns NR:ns ## COG: Cj0192c COG0740 # Protein_GI_number: 15791579 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Campylobacter jejuni # 4 196 2 194 194 325 82.0 4e-89 MSYYVPIVIEKTGRGERSYDIYSRLLKDRIIMLSGQIDDGVAASIVSQLLFLEAEDPQKD IYLYINSPGGVVTSGLSIYDTMNYIKPDICTICIGQAASMGAFLLSCGTKGKRYSLPNSR IMIHQPLGGAQGQATDIEIQAKEILRLKATLNEILADNTNQSLEKIAKDTDRDFFMSAKE AKDYGLIDNILTKSLK >gi|197325095|gb|DS990371.1| GENE 26 20973 - 22277 2012 434 aa, chain - ## HITS:1 COG:jhp0731 KEGG:ns NR:ns ## COG: jhp0731 COG0544 # Protein_GI_number: 15611798 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Helicobacter pylori J99 # 4 432 2 429 451 343 47.0 4e-94 MNPSLKVNKINSANANAQATIALSELDKKIDQVTKAAGKNLKIDGFRKGKIPAAVIKSRY GKQLETDAQRECVQDLLQEILKELNIKPNALIGDPRITKFEKKENGIELEIELSLAPDIP LNDVESCIPEVKIPEVTEEEINQRLEEIADARAPLVGIEDARRKLKDGEYAKIDFEGFID GKPFEGGKAENYLLKIGSKSFIEGFEDQLIGMKKDEEREIQVTFPENYHAANLAGKPATF KVKLNEIQTKGKIEIDDNFAKTLLPEEKEANVALLKEKIKDQIAAEKKQALYNNELKAVL IENLHKAIDFDLPNLIVEQEMDLLLKNEFAKLPKEEQEKLAKDTEALKAKREEQRDAAQK SVKSTFIIDAIAKRDNIDINENEILNTIYYEAMAMRQDPKMVLEYYKNNNLIPAIKMAML EDRILTNLLNKNAK >gi|197325095|gb|DS990371.1| GENE 27 22369 - 25746 3017 1125 aa, chain - ## HITS:1 COG:Cj0886c_2 KEGG:ns NR:ns ## COG: Cj0886c_2 COG1674 # Protein_GI_number: 15792216 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Campylobacter jejuni # 571 1123 8 573 573 644 64.0 0 MLGILSIVGEFGLLGAIGKAYAHLHFNLFGYFGYIWLLILAYLFYKNTADTKERIIEKTL GIVIIGLALLILQGLFISDAGFFSNAFSSILKSFINPLGIFGLTLILILLGIMLYTGKSA KTLLHSFIKGLKDDLQKTPKEESKQSKKESFFLRLKAFFTPPNKISQRRNPHSLTLEELA SLSKNAPSTPNIIQETQETKRESELDDLSSTKPTEEKSLEETPNPLEIKEIESSSLPYPT DIPKIENELQYTPNSTANEESKIRLIPTQEAQGPKNHNLKQFQMESIMSLERFKNFEKSI FLQEEKEEKDEPIKLIKKDQTENSTSQSTQDTYKFPIPQESQNLQEPNPEVLSSKEDLSP KESPKPIKAYPKKLYSATPFSAYYDKDPTDATRNCLVPNNPESSQNQAPAVNEVEAITKN EAQQASEDEDIKAIQTAIKEELQKAQDFLHYQTQESSPQFVEVENEIVQQETQAAIEEKS EDKKDITPNLDHLAKTNPQTTFEESSLQESPINPIPQEAPLLKNINFPVYGYGNTFNQAP QEINPNSTLQELPQQKSQENAPTPITPQSQQETLEILQNAIREKRDLTLQFKEEITLTPT KIPLESNQNQQNQSTPNAQESITQTTPQTPQPQTNTTQVKILEENQNLLKEIETNTELKP IQTDFILPKLDFLQTPQEERIEIDEDEIDKKINDLLNKLRMFKIEGDIVRTYSGPIVTTF EFRPSPNVKVSRIQTLQDDLAMALRAKTIRIQAPVPGKDVVGIEIPNSQIQTIYLREILE NEIFQNAASPLTLALGKDIVGNPFVTDLKKLPHLLIAGTTGSGKSVGINAMILSLLYKNS PDTLRLLMIDPKMLEFSIYNDIPHLLTPVITQPKKAIIALDNAVKEMERRYTLMSEARIK NIESYNKKAEIEGFEPFPYIVIVIDELADLMMSGGKEAELSIARLAQMARASGIHLIVAT QRPSVDVVTGTIKANLPSRISYKVGQKIDSKVILDSFGAESLLGRGDMLFTPPGGGIVRL HAPWSTEEEIEKIVEFIKSQRPVQYNENFMPNEDETLGLNYEGETDELYEEAKRIMLADN KTSISYIQRRLGIGYNKAANIVEQMTARGFLSQPNSKGAREIIGE >gi|197325095|gb|DS990371.1| GENE 28 26009 - 27082 1042 357 aa, chain - ## HITS:1 COG:Cj0335 KEGG:ns NR:ns ## COG: Cj0335 COG1377 # Protein_GI_number: 15791703 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhB # Organism: Campylobacter jejuni # 2 352 3 353 362 315 46.0 1e-85 MADEEEKTEAPSARKIEKAREEGNVIKSPDVNAFLGLVVGLVLIFLCFNFWVDGLSAIFF EVYHIFNQDLTRSNAISLTISLVFKILYLLAPIFGALMLIGIVANISQSGFLLTTKAIQP KLQKLNFISGLKNIISLKKLLDGFLITFKVLTAFIIAFFVFLGFMKELTTVSLFPIGDQM IWLKDKALILIAILLAFFLVMAITDYLIKRYQYFKSLRMSKQEVKDEFKNQEGDQQVKGK IRSLMFQAAKKRMMQNIPNADVVVTNPTHYAVALRYDSTKERAPRVLAKGVDFLAQRIKE IAKENEIPIIENPPLARALYKDVDIDKEIPETLYQAMVEILIKVQQINEERKKSINF >gi|197325095|gb|DS990371.1| GENE 29 27075 - 27632 619 185 aa, chain - ## HITS:1 COG:Cj1350 KEGG:ns NR:ns ## COG: Cj1350 COG0746 # Protein_GI_number: 15792673 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein A # Organism: Campylobacter jejuni # 3 176 7 184 191 82 36.0 5e-16 MESCVILCGGKSSRMGQKKENLDFLGESLADFQAKKMQKIFSQVYFSSKKPISNSSHLQT LLDLNAEFAPIFGLESVLKTLKKDIFILSIDTPFLSEESIKKLIASYQKAKKPTFAKNQK IHPLLGIYTYEALAHIQHQIAQKNYRLMDLLGRLNVDFVEIPESQTQNLNTPKEYQNALQ GYLNG >gi|197325095|gb|DS990371.1| GENE 30 27725 - 28687 1048 320 aa, chain + ## HITS:1 COG:jhp0705 KEGG:ns NR:ns ## COG: jhp0705 COG2896 # Protein_GI_number: 15611772 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Helicobacter pylori J99 # 1 320 2 321 321 348 52.0 1e-95 MIDSFGRVIDYIRVSVTERCNFRCLYCMPNTPMDIGREEDDVPLESVLNFIKVVIDEGVK KIRITGGEPLLRRGIAGFIGEIYRYNPNIDIALTTNAYLLEPLVKDLKEAGLKRINISLD SLKKERIVCISKRDGLEKILAGIKKAADEGLIVKLNMVPLKGINDDEVVDILEYGMNLGV GVRFIEYMENTHAKGGTIGLRSEEILQRIGEKFEFRLLKKEIFGPATLFEIPQRDSYLFG IIAPHNDDFCKTCNRIRLSSEGKLIPCLYHENAVDIKEAMLYGDTSEILRRLNLCIQNKP EKNDWNLNEISTRAFYKTGG >gi|197325095|gb|DS990371.1| GENE 31 28800 - 29237 755 145 aa, chain + ## HITS:1 COG:HP0243 KEGG:ns NR:ns ## COG: HP0243 COG0783 # Protein_GI_number: 15644871 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Helicobacter pylori 26695 # 3 145 2 144 144 140 48.0 5e-34 MEKIVQQLKQIQADSAVFYIKLHNYHWNVKGMDFHPVHAALESMYDEMADLMDDMAERVL QIGQKPYVTIKDMLAASKIKEESGTSFDSKTIIQAILPEYEYFLKAFRELSDTASEANDK ATTALADEKIASLEKAIWMIKAQLA >gi|197325095|gb|DS990371.1| GENE 32 29496 - 30179 975 227 aa, chain + ## HITS:1 COG:no KEGG:WS0773 NR:ns ## KEGG: WS0773 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 227 33 261 261 233 59.0 6e-60 MSQSIFIDPVAKSEQTIFVAMRNTSGQNINLSPKVTSLLQGKGYRIVDDPKEATFILQAN VLYCDIKQENNAAPAAGVGAVTGAGVGLYNHSSATGGVVGGLIGAAVGGIAGKLTEDTIF QMQVDINIRQKITGGTINTNASSSRQASVNDQRRAGFLNSFAGDVASTQKTGKLNDNRAN YNEQVYTSDYSEKQTTLFAEATKLNLKLEEAIPVLEDKIATQISGIF >gi|197325095|gb|DS990371.1| GENE 33 30230 - 31321 1341 363 aa, chain - ## HITS:1 COG:RSc2968 KEGG:ns NR:ns ## COG: RSc2968 COG0232 # Protein_GI_number: 17547687 # Func_class: F Nucleotide transport and metabolism # Function: dGTP triphosphohydrolase # Organism: Ralstonia solanacearum # 15 355 41 375 387 263 44.0 5e-70 MNPHHRFFPVNPDFRNPFRRDRDRILHSSYFRRLEYKTQVFLNQSGDYFRTRLTHSLEVS QIARTLAEYLKLDENLAEAIALAHDLGHTPFGHAGGDELDKIMRHYGYHCGFDHNFQSFR VVTSLEKRYKEFDGLNLTFATLEGILKHSYPYEKSFLNPWHKETFKPEFHPSLEAIIVDL SDEIAYISHDIDDGVKYGLLHFEDLQDSKLVSDSIHYVKTIEKISQNDPIFRYRFTSKLI TLLVYDIIENNKPCMQDKVQHFIYNAQESLPISHTPAIQKEIKILKKILFKKLYRHEEIS RKMFMGKRCVRKLYECFNNDINLLPNQMRNKIEKGAKIHRVCADYIASMTDRYAMALYHE LGF >gi|197325095|gb|DS990371.1| GENE 34 31402 - 32103 842 233 aa, chain + ## HITS:1 COG:Cj0809c KEGG:ns NR:ns ## COG: Cj0809c COG0491 # Protein_GI_number: 15792147 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Campylobacter jejuni # 10 233 2 198 198 176 43.0 4e-44 MVVFENDFFKILRKPFGEYQTNCYLAISQDETESLVIDPGIGATNWVLENAKNPLAILNT HGHFDHVWSNAALQEKLPNVPLLCPFEDAFMLQKDFFNTGLQESKPNILVGADCDSVIVE FHSNVSNLGRKNQFNYGDFEIEFICYPGHTPGCSVIVLNHKKIPNQKVMFSGDFVFYRSI GRSDFPYSDSATMKASLETFIQSKEDILIFPGHGRETTFKQEKENIPYWLMRF >gi|197325095|gb|DS990371.1| GENE 35 32209 - 32544 186 111 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIITKIIEYLTVNLKRSDSLPTNPTAAHAIAMLCGEIIFPTTPPTEFAARNKTSGISSCL AVSCCSVPKRRFELVSLPVRNTPSQPTIGEKNAKASPVSAKARARVADKPL >gi|197325095|gb|DS990371.1| GENE 36 32833 - 34023 1344 396 aa, chain - ## HITS:1 COG:jhp0128 KEGG:ns NR:ns ## COG: jhp0128 COG1620 # Protein_GI_number: 15611198 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Helicobacter pylori J99 # 1 396 1 400 549 428 61.0 1e-120 MEWTQVYDPLNNLWLSALVAFLPIALFFLSLVVFKTKGHTAGFLTVVLAAIIAVFVYGMP FNKMLFSFVYGAVYGIWPIAWIIVAAIFLYKLTVKSGYFDILRESIISITPDQRLQVILI GFCFGAFLEGAIGFGGPVAITAALLVGMGLRPLYAAGLCLIANTAPVAFGAVGIPIIAMA GVVGVPAIEISSVAGHMLPPLSLFVPFFLVFLMDGFKGIKETWPALFVAGFSFALVQYLT ATHLGPELPDIASAVVSIAATTIFLKFWKPKNTFKFDSEVGGKQTLEAKQYSASQITLAW TPFVILIIMIIIWTQGWFKEALAFTTLKFNFDSLNGLFQTPPAVNETKAVNSVFSLPLVL NAGTSIFITALITMALLKVKVSTAITTFGETLNEMK >gi|197325095|gb|DS990371.1| GENE 37 34252 - 34980 706 242 aa, chain + ## HITS:1 COG:Cj0075c KEGG:ns NR:ns ## COG: Cj0075c COG0247 # Protein_GI_number: 15791465 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Campylobacter jejuni # 2 239 4 241 246 340 64.0 2e-93 MKVYFFSTCIGAAAFADTCVNSIKLLQKEGVEVVFKKDQTCCGQPSFNSGYYEETKKVAL YNMNLFKGSEPIILPSGSCAGMMKVDYIELFEGTPYESQARDFSSRIYELSEFLDNVLKV RYEDKGVPTKVTWHSNCHALRVAKCINSAKNLIRSLSNVELIELEREEECCGFGGTFSVK EPEISNAMVTQKVQDITSRGVEYLLSADSGCLLNISGAMKKQGVDVKPMHLYDFLAQRIG LL >gi|197325095|gb|DS990371.1| GENE 38 34991 - 36433 1410 480 aa, chain + ## HITS:1 COG:HP0138 KEGG:ns NR:ns ## COG: HP0138 COG1139 # Protein_GI_number: 15644768 # Func_class: C Energy production and conversion # Function: Uncharacterized conserved protein containing a ferredoxin-like domain # Organism: Helicobacter pylori 26695 # 7 480 8 481 481 657 64.0 0 MSANIKQQYHDVIHTKLEDAQLRKNLLSVMDTLKGNRKKLISTRFLDWEVLREKGKEIKQ KNLSKLDVLLETFESNARKNGFIVHWAKNSEEANNIVLEVMQKNHITKILKGKSMASEET HLNAFLKAKGLEPIETDLGEIIIQLIDEPPVHIVAPAIHKNRYQIGEIFHQKLGAPLESE PEKLNEIARTHLRREFQEFKLGLSGVNFAIANEGAIWLLENEGNGRMSTTACDIHIAFCG IEKVIESFEDASTLNALLIPSATGAAVTCYNNIITSPRKEGELDGPKEVHIILLDNNRSQ MLSDSHYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGEVISPQLFGLNKFSPML DLCSLCGRCSEVCPVKIPLAELIRDLRSERVGQGRKSVVGTDSSTQNPAEIKAMSQFATL ATSPNKWRFALTMANIFAPLGKIFAPFTPLLKNWVKYREFPKINGNLHKKVSQMQGVIYE >gi|197325095|gb|DS990371.1| GENE 39 36426 - 37073 707 215 aa, chain + ## HITS:1 COG:HP0137 KEGG:ns NR:ns ## COG: HP0137 COG1556 # Protein_GI_number: 15644767 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Helicobacter pylori 26695 # 1 215 1 211 211 169 43.0 3e-42 MSKADILGRVRDSLKVNTHIPNPKVQYANPMNYTHKELLEEYKLNQSNNKAIVRESSLDT LESTIAEILGEVKAKEVLYNTDVSLDFKGMEAKFIPYTQSVDSMRGELFGIDTSIVEARC GVANLGIVGLSANPQAPRLSSLITNNCIYLLKKEHIVENLYAGIECIKAYEKNRSGSEIL PTNIIFVAGPSRTADIELQTVFGVHGPRVVYVVLY >gi|197325095|gb|DS990371.1| GENE 40 37091 - 37762 673 223 aa, chain + ## HITS:1 COG:Cj0016 KEGG:ns NR:ns ## COG: Cj0016 COG0603 # Protein_GI_number: 15791415 # Func_class: R General function prediction only # Function: Predicted PP-loop superfamily ATPase # Organism: Campylobacter jejuni # 3 223 4 223 224 197 45.0 1e-50 MDKAIVLASGGLDSCVSVACAIKDGYEVCLLHINYGQRTQKRENQAFNDIANYYGIQNKL IVDIDYLRQIGGSSLVDSSIPIEQETIPSSTGQIPMTYVPFRNANMISIAVSWAEVIGAK KIYVGAVEEDSSGYPDCMEIFYEKFNELLKVALLPQNNVEILTPLIHLNKAEIVHQGILL KAPLHLTWSCYQNEDKACGVCESCKLRLRGFKLAGECDPIAYK >gi|197325095|gb|DS990371.1| GENE 41 37779 - 38162 541 127 aa, chain - ## HITS:1 COG:Cj0465c KEGG:ns NR:ns ## COG: Cj0465c COG2346 # Protein_GI_number: 15791829 # Func_class: R General function prediction only # Function: Truncated hemoglobins # Organism: Campylobacter jejuni # 1 126 1 125 127 163 63.0 7e-41 MRYQTICVEGINQLMDIFYAKIRADKNGVGDVFNKAIGTSDAQWEAHKKKISNFWQGMLL GIGDYRGQPMKAHLDLPPFPREFFNIWLGLFEESLHKVFSPEISMQILQRAQMIAGRFQY MLYESGH >gi|197325095|gb|DS990371.1| GENE 42 38172 - 38612 383 146 aa, chain - ## HITS:1 COG:HP1502 KEGG:ns NR:ns ## COG: HP1502 COG3399 # Protein_GI_number: 15646111 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori 26695 # 1 145 1 144 145 119 51.0 2e-27 MEALYPYFLLIHLICAIIFLGFIFTDVVLLTPIRKILGDEFANKMFSIIGKRGGKIMPLC LLLLVLSGGAMISQYIGSDIGYFSTHLQQFLVLKTFLALIIVLAVITSLTFHYILKKPNP LAKIIHPLALILGLFIVILAKFAFYF >gi|197325095|gb|DS990371.1| GENE 43 38714 - 38842 103 42 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|253826971|ref|ZP_04869856.1| ## NR: gi|253826971|ref|ZP_04869856.1| putative transcriptional regulator [Helicobacter canadensis MIT 98-5491] putative transcriptional regulator [Helicobacter canadensis MIT 98-5491] # 1 41 1 41 189 80 100.0 3e-14 MQDYIKMLYSVGYKRFYNANEFLFFEGEIPKKILVLLSGKVS >gi|197325095|gb|DS990371.1| GENE 44 39008 - 39382 269 124 aa, chain + ## HITS:1 COG:Cj0466 KEGG:ns NR:ns ## COG: Cj0466 COG0664 # Protein_GI_number: 15791830 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Campylobacter jejuni # 1 123 67 189 198 95 46.0 1e-20 MPSFLKLPYPASAVCVGECEILEIDLEIFKKHCVGNADFCFSFIASLCQKIRILENHISR YSQSLKERVKEFLVENKEDLSNFTQRQIAQKLNTSPESLSRVLREFKEEGLIKTQKGKIV NINL >gi|197325095|gb|DS990371.1| GENE 45 39507 - 41762 3409 751 aa, chain - ## HITS:1 COG:jhp0804 KEGG:ns NR:ns ## COG: jhp0804 COG1749 # Protein_GI_number: 15611871 # Func_class: N Cell motility # Function: Flagellar hook protein FlgE # Organism: Helicobacter pylori J99 # 1 751 1 718 718 613 49.0 1e-175 MLRSLWSGVSGMQAHQVALDVESNNIANVNTNGFKYSRADFSTMVSQTKRAATIPYAGYG GVNDYSVGLGTGIETTTKIFSQGSLQNTDRKADLALEGNGMFVVSNNGGFTNMYTRDGAF SFDAVGNLVTTSGYIVQGWVRDLSKLNCDCGSGNINRVDSTGPIGNITIDPRLTIPAKAT ETVTGNINLTSGTKTENTTCPSPLDSTSANNYIAGGLDRLYDTADRQLEVAQDMGVMFND AGEAMQLQEGQGIWVSYQTATTTPLHINAAAVGASSITINGVTITWNNDPTATGSSNLLA AQVAINNLKDTTGVEALTRGDTLILQNTNQLDGDGSNKNIRVTAMNGALEGFETQAGGAA GPFVQTTTVTTAFKYNYTLQTDADSTSGQFRTTEDLRALMQQDANKVKEFGGDSAAAAAG MTGPNPTFLQSNYTVSVKLNSNGQFEINNRDDGVNVANNQQGAAYDNLNIFVSAYNDTLT TTNVLFKNQMKAMNTGVLVEGGNITSTAGLRMATYSQTLDIYDSLGNKHDFTIQFTKVAG NQWNWRIIVPEPAELIGGTAQRPNILEGGSVTFGEQGEILGFNPSTIQFKPNNGAAFPQS IDLDFGTSGGYDGLTSTAAESQANNIDGDGYTAGMLQDFYFDATGTMIGKFDNGQTLALA QVAVASFANYEGLQESGSNLFAESPNSGGPTIGTAGSGGRASIQASKLEMSNSDLSRGLT QLIVVQRGFQASSKSITTSDQILNTLLGLKQ >gi|197325095|gb|DS990371.1| GENE 46 41993 - 42667 802 224 aa, chain - ## HITS:1 COG:jhp1142 KEGG:ns NR:ns ## COG: jhp1142 COG0020 # Protein_GI_number: 15612207 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Helicobacter pylori J99 # 2 224 5 232 234 239 52.0 3e-63 MLRHLAIIMDGNGRWAKNRFKPRFFGHQEGAKTIHSITETCVKKGIKYLSLYAFSTENWN RPKKEIDFLMNLLEKYLHEQTQTYLDSNIIFKVIGDISVFNSKLQEKIHHLQSITAESCN GLTQILALNYGAKDELRRAFLKIQNKNLPITQESITQNLDTAGIPEVDMLIRTGGEQRLS NFLLWQSAYAELFFTKTLWPDFGSDELEAMIEKFATRQRRFGAI >gi|197325095|gb|DS990371.1| GENE 47 42668 - 43426 819 252 aa, chain - ## HITS:1 COG:no KEGG:WS2059 NR:ns ## KEGG: WS2059 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 252 1 256 256 192 47.0 1e-47 MIKQMGQLKQVQNQIQNAAGKTTQFNAALPMKLEVMEKLQGIRYMIKVGNIAMETKSIKD LEVGGKYWAMMGKNTSGSITLSNLIKQPKLLKDDNIPLKLSNEAMQQFLQGENPFEVMRG FLTERLGNAESKWEFAFLSHMLMSLKHKVLTLPLHYDDEKKNGFMQLRKKKIANQNALEF YSVFANLGATWGVLYNLDSGIRLDIYVMYESVARILKNNLSELEFITQAHINVDSKITPL YDFSDSLLDLEG >gi|197325095|gb|DS990371.1| GENE 48 43423 - 44643 1176 406 aa, chain - ## HITS:1 COG:HP0841 KEGG:ns NR:ns ## COG: HP0841 COG0452 # Protein_GI_number: 15645460 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Helicobacter pylori 26695 # 3 405 7 422 425 268 40.0 2e-71 MALDYLSKLLTNKKIILGICGSIAIYKSIEILRNLQKLGASVRVVMSDDSQKFINPLLFE ALCGYQVLTTQSQNWGEIPHNHIEIASWGDIFLIAPISANSLNKVAYGIADNILLESFLA FEGPKLIAPAANTKMLKNPATQSSLNLLTQRGITIIPSQSKELACKTIGDGALAEPLEIT YQIIRTFYQEKFWENKALCITSGGSKENIDNVRYLSNHSSGKMGASLALAGYFLGAKVTY IGSLCPYPLPLGINYNSAQTTQDFLQSIQKWQESNAFSKDSFLLMSAAISDYIPKESFQG KLKKETIGQEWNLSLQKNLDILSTISKKQTTIGFKLESQNGLENALKALQNKNLDAICLN EITPSLNPMNATENQIIWISQKSQKNLGKNDKLTLAFQILNEAKNL >gi|197325095|gb|DS990371.1| GENE 49 44646 - 46463 1926 605 aa, chain - ## HITS:1 COG:jhp1473 KEGG:ns NR:ns ## COG: jhp1473 COG0768 # Protein_GI_number: 15612538 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Helicobacter pylori J99 # 4 597 5 588 588 593 50.0 1e-169 MHKRLYFVFFCFVVFWLILLIRIFDLSILKNEQYQEQATKNILREEIIAPIRGEIFDRNG EPLATNNIGFTISLPPNLSLRSNLPILEKEIEYLLTFFPQYTKEELIKKYRQKDSPYNHD FIPIIDFVEHDFILKYYPQFAQNELLRITPLARRYYPHHQSASHIIGYVSRANERDIELQ PISNYTQNIGKEGLEKQYDDFLQGNLGKRIIKVDALNQEIQTLSHQDSKEGDSLITTLDI KLQKAMDQAFEGKNGAAIIMDATNGEILAAGSYPEYDLNQFIGGISHDNWNALRDSPYKP LINKFANGLYPPGSVIKMGMGLAFLEYADIDENKELDTPPFVESGGRKFRDWKKEGHGKS DLYKALKRSVDVYFYLLSQKVDFEDIANVLKQMGLGEKTGVDLPSESRGIVPSPNLKLKR FKDKWYEGDSIISSIGQGMFLTTPLQIANYTALIATEKLPTPHFAKQIQNEVQSYPPKDV LNDFQRSKMGVLREGMRQVCSEVGGTAYYATRASRVKLACKTGTAQVVGISQQDEERIKE EELDYFHRSQAWITGFLPIDNPKYVITIMVEHGGSGSGAGGPLLAELANALIDWGYVKET RNKKE >gi|197325095|gb|DS990371.1| GENE 50 46464 - 46928 410 154 aa, chain - ## HITS:1 COG:no KEGG:WS2063 NR:ns ## KEGG: WS2063 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 151 1 151 151 79 37.0 3e-14 MRRNRTDKKNLRILFLVIGIVVYISISDIYYLLPPLFGVIYVLAQERFEANDINAFYWLI PLFIFLETSKGLPFLSTLLFMAFSFKIILPKFRKFFGFSKIFIPLFIIYAYFGYFIFLNF MGFLFDYDVPPFSWILGFYAGVEIVLIWLFLWVF >gi|197325095|gb|DS990371.1| GENE 51 46895 - 47416 676 173 aa, chain - ## HITS:1 COG:MA4339 KEGG:ns NR:ns ## COG: MA4339 COG1246 # Protein_GI_number: 20093127 # Func_class: E Amino acid transport and metabolism # Function: N-acetylglutamate synthase and related acetyltransferases # Organism: Methanosarcina acetivorans str.C2A # 2 173 1 149 151 96 33.0 3e-20 MIITQPTLKNIPQMREILKPEIERGVILERPLDVMANMIRSYHIAWEEAETLNSQQKLAL ENKKLEDLKNPTMLGFCALHIHSLELAEIRSLIVAPFAQRKGVASALIVDCLKEGKALGI SKVLVLTYKRVLFEKLGFNEISKEKIPNQKIWADCILCKHFPLCDEIALIKKI >gi|197325095|gb|DS990371.1| GENE 52 47413 - 48042 683 209 aa, chain - ## HITS:1 COG:Cj0650 KEGG:ns NR:ns ## COG: Cj0650 COG0218 # Protein_GI_number: 15792010 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Campylobacter jejuni # 8 201 5 196 198 196 58.0 3e-50 MTYTLSKASFFTSAQNLSQCPPPLLSEIAFLGRSNVGKSTFINLLCKQKNLAKSSQTPGK TQLINFFLTHWKQKDSNEILQIYLVDLPGFGYAKVSKSQKELWNKNLIEFLKKRDSIRLF VHLRDSRHPYLEIDSNLIEFLTPFLRKDQKILQIFTKFDKLNSTQKTNLKKEFPNALFSS SLQKNNLQEISDFILNHTLGIQTKLGEAK >gi|197325095|gb|DS990371.1| GENE 53 48039 - 48506 551 155 aa, chain - ## HITS:1 COG:HP1568 KEGG:ns NR:ns ## COG: HP1568 COG1934 # Protein_GI_number: 15646175 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori 26695 # 21 150 36 165 183 96 36.0 2e-20 MKIFILILTFLFPLIADEIIIDAQELIADEKSKVTQLRGNVQITRINDKLNCDEAYIFLD KNNKPNKMQALGNVKFWLTLENNRKIQGKANELIYFPNLQEYQIIGNAFVEEPAKKNEVK GEKIIIRYKEGYINIVGDNKAPARLIFKLDKEAKQ >gi|197325095|gb|DS990371.1| GENE 54 48503 - 49078 485 191 aa, chain - ## HITS:1 COG:no KEGG:WS2068 NR:ns ## KEGG: WS2068 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 49 172 38 161 181 64 31.0 2e-09 MKFSKLKSQQKILSKPKSGRIVTGFFICLSLFSIAMVFALNKQQEAKKQALANISRFEAF DFEYYKISSLGVETYAIGKNVKETSKESGILEQISVNHYLFEEQKSELLQSSLAFFNSQE IFFPKGVNYTRDTIKFWSQEANYSIPTKEILGKGDFVVFNENYNIRGKNILYKNGKVYAD NIHGTLTTDKK >gi|197325095|gb|DS990371.1| GENE 55 49065 - 49556 665 163 aa, chain - ## HITS:1 COG:jhp1478 KEGG:ns NR:ns ## COG: jhp1478 COG1778 # Protein_GI_number: 15612543 # Func_class: R General function prediction only # Function: Low specificity phosphatase (HAD superfamily) # Organism: Helicobacter pylori J99 # 1 163 1 163 164 146 46.0 2e-35 MIKLIVLDVDGTLTDGKITYDNEGNELKSFNVKDGLGIAAWIKLGKQVAIITGRKSQIVE NRAKELGITHIKQGISNKAKALYEILEQSQIQINEVAIIGDDLNDLSMFKIAKHTFAPKD SAKEIQKIAHTTLSKKGGKGAVREMIDILIKQENLEAKLYEIF >gi|197325095|gb|DS990371.1| GENE 56 49553 - 50125 647 190 aa, chain - ## HITS:1 COG:CC3734 KEGG:ns NR:ns ## COG: CC3734 COG0131 # Protein_GI_number: 16127964 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate dehydratase # Organism: Caulobacter vibrioides # 4 190 7 196 196 179 45.0 2e-45 METLTRNTKETQITASLEVYGAGIANIQTGIGFFDHMLQSLCKHASWNLNLECKGDLEVD YHHSVEDCGIVIGQLLKNSLFPIQKVERFGNSAVVMDEACVECDLDLSNRPFLVFEVKTE GKVGSFDCELIEEFFRALVFNAGLSVHIIQKRGKNRHHLIEASFKAFGVALRRACVKNEK IGIPSTKGVL >gi|197325095|gb|DS990371.1| GENE 57 50139 - 50942 652 267 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|223039866|ref|ZP_03610150.1| 30S ribosomal protein S16 [Campylobacter rectus RM3267] # 3 267 8 286 286 255 48 3e-67 MKKTFLFSLVFAFFFFGCGDRSSNLYYNKTPHYGTMNSSQQSQKATMRPYQINGKWYYPT MVALGETYDGIASWYGPKFHGKKTSNGETYSMYAHTAAHKTLPMNTIVRVTSKENGKSTI VRINDRGPFISGRIIDLSNSAARDIDMLQKGTANVRIEVIGFNGAISNSMPLTKEALATS EYKVATTQTSVQLSKFLVQIGAFRNKNGARRFQQTHANSHGYKAIIKEYSLNGSPIYRVM LSGFKSEAEARDFISLQKIAGAFITTE >gi|197325095|gb|DS990371.1| GENE 58 50946 - 52019 1229 357 aa, chain - ## HITS:1 COG:Cj0645 KEGG:ns NR:ns ## COG: Cj0645 COG0741 # Protein_GI_number: 15792005 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Campylobacter jejuni # 2 354 3 355 372 249 40.0 6e-66 MKIILTLLLSFSFALSQFNSTAYDLKSEEVLKTFDVNPDFLNNPYFINVKNSFLEEIKQD YLLKKFKDNYEFIPTLKTMFLEENIPQEFLYLAMIESGFSLSAKSNKRAVGMWQFIPKTA QALGLDINAQIDERKDLIKSTKAAIIYLKSLKEQFGKWYLAAIAYNCGEGRLKKAIKEAN SDSLSILLDTEKKYIPLESRMYIRKILSLSLLFHNINMLKTNDYDYFLNRGANSLLATIQ VAPATPLAKIAKDANLPLNKLKAYNPQFKRNITPTYAKIYSVYLPYQFLATYKANTIDKV AIQNRPYLLHRVNKGDTIYSISKHYGVSSKIITQYNAIKNANALSINQEIVIPLEQG >gi|197325095|gb|DS990371.1| GENE 59 52111 - 52584 310 157 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253826985|ref|ZP_04869870.1| ## NR: gi|253826985|ref|ZP_04869870.1| hypothetical protein HCAN_0332 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0332 [Helicobacter canadensis MIT 98-5491] # 16 157 1 142 142 224 99.0 1e-57 MKNIFLYLLLGLALLLVLGYFFSPSYSLSSQAKKEFAKGNYQESYHLATLALKEDPYNRS AFSIANQSKQRLNLQKFLQKAQTYYEKISKLLQNPSLTPQEFLEIQWIYDAFSKEYASLY FFNKPTQTEKEAIENYAQWFKQLKEKIDLAKKTIIIK >gi|197325095|gb|DS990371.1| GENE 60 52587 - 53219 592 210 aa, chain - ## HITS:1 COG:Cj0457c KEGG:ns NR:ns ## COG: Cj0457c COG2121 # Protein_GI_number: 15791821 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 16 201 13 191 209 154 44.0 8e-38 MKNLKRKLILFFSPPLIFFLIKFLYKTCKIQYQINPKTLELLQKQQSFILSFWHGNLLMQ PCLFGKILKNSPQKAHVLISQHFDGDIISRAIKLFGIDSLRGSSSKGNIKVLLLALRKLQ ENDFVVITPDGPRGPYHSVADGIVLLSQKSKKPIVSSQVHYQKFWEFKSWDRFQIPKPFS RITYILKEPLWIENLELDEAKTQIQRFMEA >gi|197325095|gb|DS990371.1| GENE 61 53230 - 53796 274 188 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 [Bacillus subtilis subsp. subtilis str. 168] # 1 175 251 423 451 110 35 2e-23 KICKAIHMPLQSGSTKILQKMKRGYSKEWFLDRVAKMRALIPDLSIGTDIIVGFPTESEE DFLDTLDVLEKVRFDTLYSFIYSTRPHTQAATWLDNGEIQLLDEEIAKNRLMILKDRHKE ILAQENAKQLGKIHPVLFESYDEENFLLEGRSDTNKLIRVKAGRNLIGEICNVKISEIKG AQLIGELL Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:22:55 2011 Seq name: gi|197325094|gb|DS990372.1| Helicobacter canadensis MIT 98-5491 supercont2.5 genomic scaffold, whole genome shotgun sequence Length of sequence - 5905 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + SSU_RRNA 349 - 1805 100.0 # AF262037 [D:1..1457] # 16S ribosomal RNA # Helicobacter canadensis # Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter. + TRNA 1915 - 1991 94.1 # Ile GAT 0 0 + TRNA 1994 - 2069 92.1 # Ala TGC 0 0 + LSU_RRNA 2313 - 5025 99.0 # AY596221 [D:1..2713] # 23S ribosomal RNA # Helicobacter canadensis # Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter. Predicted protein(s) Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:22:55 2011 Seq name: gi|197325093|gb|DS990373.1| Helicobacter canadensis MIT 98-5491 supercont2.6 genomic scaffold, whole genome shotgun sequence Length of sequence - 2377 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 270 - 309 6.1 1 1 Tu 1 . - CDS 317 - 1756 2061 ## WS1780 hypothetical protein - Prom 1789 - 1848 11.2 Predicted protein(s) >gi|197325093|gb|DS990373.1| GENE 1 317 - 1756 2061 479 aa, chain - ## HITS:1 COG:no KEGG:WS1780 NR:ns ## KEGG: WS1780 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 479 1 441 441 327 46.0 8e-88 MKFIKLSLAASVALGALSTASFAQPLEEAIKGIDVSGYLRYRYNDDRYNDSTGNAAHQWR AVADFKTPVVNNVALNFGVWYQNENNVNHGKGTGNETPGTAQAFTGSGLGSGSDGQFGVR EFYATITPDSTATTIKIGKQLLDTPVTNAYDRDRGTGILALNSDIPNLTLAAAAFDSWSI NEVNAQNQINNAGGVVTNNGGGSLINNGLSNDYSIDKPLYALAGIYGIDTNYGRFGGQLW GFYIDDTVDALVFGELSWQGSLLRAKLQYSFAALNNDSDSIFAGLYGYGTANRNKANISE ANDAFVVEVGADFRNDFQLPLNVALGYITNFADGTAVALEDEGSNVSRKGKIWWQNAGTG ISTSVLRGYGVQGFGTEQDIDVFYAGVDYSFLDERLNVGLEFAWGENDISYNRVAAANNN IIKKVEFTEITPTITWKHSKQLTLSTYYAFLKNDYTYVTPVAGQDQDRDRFRVEAKYSF Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:23:04 2011 Seq name: gi|197325092|gb|DS990374.1| Helicobacter canadensis MIT 98-5491 supercont2.7 genomic scaffold, whole genome shotgun sequence Length of sequence - 1855 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 172 - 231 11.3 1 1 Tu 1 . + CDS 312 - 521 274 ## gi|224419277|ref|ZP_03657283.1| hypothetical protein HcanM9_08403 + Term 522 - 561 3.4 + Prom 559 - 618 7.9 2 2 Tu 1 . + CDS 638 - 1853 1373 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Predicted protein(s) >gi|197325092|gb|DS990374.1| GENE 1 312 - 521 274 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224419277|ref|ZP_03657283.1| ## NR: gi|224419277|ref|ZP_03657283.1| hypothetical protein HcanM9_08403 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0273 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_0273 [Helicobacter canadensis MIT 98-5491] predicted protein [Helicobacter canadensis MIT 98-5491] # 1 69 1 69 69 72 100.0 1e-11 MISSINSSSVAVSGNLNVLKKAMDTEEALMSSIINGMQGVQTTMQTSQAPTQSAPATPSQ SSSKLDIMA >gi|197325092|gb|DS990374.1| GENE 2 638 - 1853 1373 405 aa, chain + ## HITS:1 COG:Cj0363c KEGG:ns NR:ns ## COG: Cj0363c COG0635 # Protein_GI_number: 15791730 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Campylobacter jejuni # 4 405 5 401 448 320 44.0 3e-87 MIQQNFSTKIVNLIMRYATNKYLTLKPSHLTQLPPPNPNKVKEKSYLLYIHIPFCMTLCT YCSFNRFLFQEDKAKAYFKSLRKEMLMVKELGYDFNAIYVGGGTTSIMPKELCETLDLAK SLFSIKEVSCESDPNHLHLEELEMFKGRIDRLSVGVQSFDDGILRKVGRYEKFGSGEEVI KKLQKAIGVLPILNVDLIFNFPNQTKEMLAKDLEIIKELKPEQVTLYPLMSSPSVKSILK RSIGEVSLKNEAQLYWQILETLKDDFSPLSSWAFSHKGSAIFDEYVVDNDEYVGIGSGSF SFLNGTLYVNTFSLKEYAHKINSGNMGVARERKYSKKAQLQYRLMVELFGGKASAKDFKQ KYNANLEWDLFKELAFLKLTGNIYKKDGDYYPTTQGKYLFLSMMK Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:23:09 2011 Seq name: gi|197325091|gb|DS990375.1| Helicobacter canadensis MIT 98-5491 supercont2.8 genomic scaffold, whole genome shotgun sequence Length of sequence - 1584 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 466 325 ## COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase + Prom 494 - 553 2.9 2 2 Tu 1 . + CDS 583 - 1582 786 ## NAL212_1308 Chondroitin 4-O-sulfotransferase Predicted protein(s) >gi|197325091|gb|DS990375.1| GENE 1 2 - 466 325 154 aa, chain + ## HITS:1 COG:aq_337 KEGG:ns NR:ns ## COG: aq_337 COG1218 # Protein_GI_number: 15605852 # Func_class: P Inorganic ion transport and metabolism # Function: 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase # Organism: Aquifex aeolicus # 1 152 89 249 268 164 54.0 7e-41 IKKNGEFTINIALIHKDTPILGVVYAPALELMYSAKQGEGAFKNDKKLPLNAQRETYKIV ASKSHMSKETNDFIESLETNKPKELISMGSSLKLCLVASNEADIYPRLGPTMEWDTAAAD AIVRESGKMTYDFSSLKPLIYNKEDLRNPYFIVK >gi|197325091|gb|DS990375.1| GENE 2 583 - 1582 786 333 aa, chain + ## HITS:1 COG:no KEGG:NAL212_1308 NR:ns ## KEGG: NAL212_1308 # Name: not_defined # Def: Chondroitin 4-O-sulfotransferase # Organism: Nitrosomonas_AL212 # Pathway: not_defined # 11 202 52 239 239 135 36.0 3e-30 MFKEFHKKYGCIFIHIPKVAGTSIERVVFESSKWLVGHKKAIDYIKKDKDKFESLFSFAF VRNPFDRTVSAFHYLKGRSCTLGDKRWADIHLKDYENFNDFALALENKTVRDKILSWMHF VPQYRFVCDENRSILVNFIGKFENIEKDFEVVKKQLKINRDLVHANSSSHESYKKYYNEQ TYQIISEIYRNDFELFDYDLEYANLFNQSLNDLQKNKINDKKLEIRAMRLRNYKKKHSFF MLKCENESLKNENDLYLNKAHSLETELIQTKNQLDSQIKILESNQNQSNLKIQRLTEANQ QLDLKNQQLTQTNSQLNLKTKELDFTLHYGTAK Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:23:15 2011 Seq name: gi|197325090|gb|DS990376.1| Helicobacter canadensis MIT 98-5491 supercont2.9 genomic scaffold, whole genome shotgun sequence Length of sequence - 1433 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 974 1182 ## COG0840 Methyl-accepting chemotaxis protein 2 2 Tu 1 . - CDS 1009 - 1431 600 ## WS0228 hypothetical protein Predicted protein(s) >gi|197325090|gb|DS990376.1| GENE 1 3 - 974 1182 323 aa, chain + ## HITS:1 COG:Cj0448c KEGG:ns NR:ns ## COG: Cj0448c COG0840 # Protein_GI_number: 15791812 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Campylobacter jejuni # 7 317 48 362 365 182 37.0 1e-45 TQKTDNKAEVFNEMFGMMTQSCAKNLKILQDDFSNSVDMLQESEKISLQNYEQTQLLETS IGGTISGVAEKLNSFQMMITQVYQDLDSITNVINLITDVSDQTNLLALNAAIEAARAGEH GRGFAVVADEVRKLAERAQKATKEIEMNIQVLRQNFSEVQSSTEEIVSDMDSVNGEVLKF VEIGKTSMAVREDAANVLDTTFIALVKLDHLLFKINSYKAIIENNKEIKLATHHECRLGK WYDTGIGKEYFSQLGSYASLEAPHSGVHDSFRSALDVFKESGMQKGNEIIDFIKEGEVAS DNVISVLDNLLKEKMTERKNEHK >gi|197325090|gb|DS990376.1| GENE 2 1009 - 1431 600 140 aa, chain - ## HITS:1 COG:no KEGG:WS0228 NR:ns ## KEGG: WS0228 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 139 52 207 207 62 34.0 4e-09 IRKFSDGIKGANEMIGAMQIADITLNALSTQAKDMEINADNLNSLDSIAKTAQFKNESLF GKELTLNLAGENVSLSLPLPSQISNENSLVENFSQKHNEINEKMTKISSLIEKASLPLGG ATQNYDFENFDSNSFKNLFR Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:23:19 2011 Seq name: gi|197325089|gb|DS990377.1| Helicobacter canadensis MIT 98-5491 supercont2.10 genomic scaffold, whole genome shotgun sequence Length of sequence - 1324 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 196 - 1323 1321 ## COG5651 PPE-repeat proteins Predicted protein(s) >gi|197325089|gb|DS990377.1| GENE 1 196 - 1323 1321 375 aa, chain - ## HITS:1 COG:HP0922 KEGG:ns NR:ns ## COG: HP0922 COG5651 # Protein_GI_number: 15645538 # Func_class: N Cell motility # Function: PPE-repeat proteins # Organism: Helicobacter pylori 26695 # 84 375 2229 2529 2529 76 27.0 7e-14 IVSAAKASGNTGESLGILSSIAGSNIHNQQVMQVITNQRFFKDTRDAARSATSFADASSS AMTAVNVSNDMAIGSRIARANNPFQSLSKERFASIQSDAPYKYYETYNAAVWANAFGGAN IIDGESGGVYGISVGADKNITDDILVGVYFTYANAELQDKLLKQDSDNFQLGIYSQIKIA PTWELNLKAYGQLGKTDQDVTSIAGINTSDFDQKFFGLSANVGKVFDLSNSWFLKPFAGA NYYYSYTPDYTEKGSILAQHVRSNTNNSVSLEVGLESRKYFSESSYLFITPKIEQYVINN GDDYVGRFAGSTTSFRIASAEKKKTYGQLIVGGNIAINDSLSLNAGIGAKQILAGKVDSK NETYLNGNIGVKYRF Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:23:19 2011 Seq name: gi|197325088|gb|DS990378.1| Helicobacter canadensis MIT 98-5491 supercont2.11 genomic scaffold, whole genome shotgun sequence Length of sequence - 1313 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 552 625 ## COG0668 Small-conductance mechanosensitive channel 2 1 Op 2 . - CDS 562 - 1302 505 ## COG0044 Dihydroorotase and related cyclic amidohydrolases Predicted protein(s) >gi|197325088|gb|DS990378.1| GENE 1 3 - 552 625 183 aa, chain - ## HITS:1 COG:ECs3795 KEGG:ns NR:ns ## COG: ECs3795 COG0668 # Protein_GI_number: 15833049 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Escherichia coli O157:H7 # 20 181 24 185 286 114 37.0 1e-25 MQEKIEAKIILLTDKFIEWLIGFIPHLISAIVIMVCGYYIARLFSKYTEQAIVKTTKDET LGVFLKNVVFVGILLLTFITALTNLGVKTTSIIAVLGTAGLAIALSLKDSLSNLASGIIL VILRRFNRGDTINVNSIIGKVDSINLFETKLTTPDNQVIIMPNSLLVSSPIINVNINSTR RMD >gi|197325088|gb|DS990378.1| GENE 2 562 - 1302 505 246 aa, chain - ## HITS:1 COG:Cj1195c KEGG:ns NR:ns ## COG: Cj1195c COG0044 # Protein_GI_number: 15792519 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Campylobacter jejuni # 1 246 153 390 392 164 40.0 1e-40 MFDIPIFFECEDVSLSTNGVMNEGNLSSKLGLLGISELSETKEVAMISELVRFMGTKSVF NAIASIRSLEILKNIKKLHSNLFTQTSIHHLILTENHCNNYNTLAKIKPPLKSEETRSKL LNYLKTMDIDLLTSLQFSQPLAQKDLPFDEAAFGIDMIEYFIPMCYTLMVKTMHMTLKDL SRILSFNPANIMGLNNYGLLKEGYYADLVLFDPKETQVIDNIESPYYDWVFSGKIKGHFI KGKRVF Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:23:20 2011 Seq name: gi|197325087|gb|DS990379.1| Helicobacter canadensis MIT 98-5491 supercont2.12 genomic scaffold, whole genome shotgun sequence Length of sequence - 1294 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 130 - 639 717 ## COG2731 Beta-galactosidase, beta subunit - Term 598 - 639 0.4 2 2 Tu 1 . - CDS 686 - 1246 723 ## COG0548 Acetylglutamate kinase Predicted protein(s) >gi|197325087|gb|DS990379.1| GENE 1 130 - 639 717 169 aa, chain + ## HITS:1 COG:jhp0395 KEGG:ns NR:ns ## COG: jhp0395 COG2731 # Protein_GI_number: 15611463 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase, beta subunit # Organism: Helicobacter pylori J99 # 4 169 5 178 178 83 35.0 2e-16 MFVGYLPDIINKFKKNEVLTKVFGYLWEAIDEESEVFARISNLKAGESFEVFFDGGAKAI EQAYLTKTPQEAFYESHQAMVDFQMLVNGKEIFFVSPHSLCEVKTPLDSTKDLIEYHKSP YTSSILLFRGNLAVFESIDVHAGGIAVNTSELVQKVVVKIPKELIKLNF >gi|197325087|gb|DS990379.1| GENE 2 686 - 1246 723 186 aa, chain - ## HITS:1 COG:aq_2068 KEGG:ns NR:ns ## COG: aq_2068 COG0548 # Protein_GI_number: 15607035 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate kinase # Organism: Aquifex aeolicus # 1 183 72 268 272 162 46.0 4e-40 MVLSGEINKEITAFLNHHGVSALGMSGKDASLFLAKPKENGKYGYTGEIIATKGEVIDNL LAQNLIPVIAPIAYGEESGHPGFNINADSAASAIAIATKAKKAIFLTDTQGVLDANKNII ESLNLQETKQLINEGVISGGMIPKVEACLECITNGVEKAHIIDGRIPHSLLLELFTSAGI GSEFVR Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:23:21 2011 Seq name: gi|197325086|gb|DS990380.1| Helicobacter canadensis MIT 98-5491 supercont2.13 genomic scaffold, whole genome shotgun sequence Length of sequence - 1197 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 1140 1167 ## COG5651 PPE-repeat proteins + Term 1147 - 1194 8.8 Predicted protein(s) >gi|197325086|gb|DS990380.1| GENE 1 1 - 1140 1167 379 aa, chain + ## HITS:1 COG:jhp0856 KEGG:ns NR:ns ## COG: jhp0856 COG5651 # Protein_GI_number: 15611923 # Func_class: N Cell motility # Function: PPE-repeat proteins # Organism: Helicobacter pylori J99 # 87 379 2102 2399 2399 85 28.0 2e-16 SSGNLNEAQGIFDSLINSNINASVGIGAITNKNFFKDVRESAKSSIDTLNNSSSVNGAIN ISNDMALGGRIARINNPYSEIKFANTLKTNALANNSNIASDIPYDYYGTKTYKNSVWANA FGGANIVDGESGGLYGISIGADKEFNENLLLGIYATYASSKIKDKLNTQDSDNYQIGIYS SYRFNHSWELNSKLYGQIGDTKQDINLAGSLNNADFNRKFIGFNTNIGKVFNLNNGLFLK PFVGVNYYYSYTPSYTEKGSLARNVESNTNNSLSLELGLEARKYFNESSYLFITPKIEQY VVNNGDDYIASFVGSNTSFSIKGEEKKKTYGQLIVGGNISLNDSLSLDIGIGAKQILAGK VDSKNETYLSGNMGIKYKF Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:23:22 2011 Seq name: gi|197325085|gb|DS990381.1| Helicobacter canadensis MIT 98-5491 supercont2.14 genomic scaffold, whole genome shotgun sequence Length of sequence - 1126 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 22 - 81 7.3 1 1 Tu 1 . + CDS 176 - 1051 648 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily Predicted protein(s) >gi|197325085|gb|DS990381.1| GENE 1 176 - 1051 648 291 aa, chain + ## HITS:1 COG:RSc1002 KEGG:ns NR:ns ## COG: RSc1002 COG0697 # Protein_GI_number: 17545721 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Ralstonia solanacearum # 9 287 19 296 312 100 30.0 4e-21 MQKLSNEQIGILWIISASIAYGIMPIWSVISQNNGISTDFILFFRFLCSAFLLFLWALYR QISLKLTKLQYLQFFFLGGILYIIQSFAYLDSLRYIPASLSVLIYHIYPIIVALIALIFL RQKLQAKTLFSLFLCFAGLAIILQPPKDLELSVYGVILSLIGALFYGLYVVFSKSYTSNL SSVVYSFYICLFAALMILGFMIPNPPQFDNFNINGILSLLGLTFISTLFPMMAYFLGMPR INVTKTAILGMIEPLVGVLLSLWLLGENLNLLQYFGGFLILFGSLVLFIKR Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:23:23 2011 Seq name: gi|197325084|gb|DS990382.1| Helicobacter canadensis MIT 98-5491 supercont2.15 genomic scaffold, whole genome shotgun sequence Length of sequence - 907 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 167 114 ## gi|253828176|ref|ZP_04871061.1| hypothetical protein HCAN_1536 2 1 Op 2 . + CDS 217 - 907 723 ## COG0814 Amino acid permeases Predicted protein(s) >gi|197325084|gb|DS990382.1| GENE 1 3 - 167 114 54 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|253828176|ref|ZP_04871061.1| ## NR: gi|253828176|ref|ZP_04871061.1| hypothetical protein HCAN_1536 [Helicobacter canadensis MIT 98-5491] hypothetical protein HCAN_1536 [Helicobacter canadensis MIT 98-5491] # 1 54 73 126 126 100 100.0 3e-20 MTINEKFHYQAIIKKFDSNLEKNSIYFVDIFGQCLFSLQPCSLRRDFILYLDTF >gi|197325084|gb|DS990382.1| GENE 2 217 - 907 723 230 aa, chain + ## HITS:1 COG:HI0289 KEGG:ns NR:ns ## COG: HI0289 COG0814 # Protein_GI_number: 16272244 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Haemophilus influenzae # 1 229 7 224 412 224 51.0 1e-58 MKWTQFDTRWMLSLFGTAVGAGILFLPIRAGTGGFWPVVAMTILIFPMVWLSHRALSRFV NETQSVDHDITHAAEEYWGRNTSFFITILYFFAIYPICLAYGVGITNTFASFFVNQLQLT SLYDPQTMQLYPAVRLVLTIVLVSAMMAIMLLKEKTITKACNFLVYPLCLVLFAFSFYLI PHWKLEIIQTTPNLKDFIEVVWLTLPVLVFSFNHSPAISTFTLSVRREYG Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:23:28 2011 Seq name: gi|197325083|gb|DS990383.1| Helicobacter canadensis MIT 98-5491 supercont2.16 genomic scaffold, whole genome shotgun sequence Length of sequence - 903 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 748 652 ## COG3004 Na+/H+ antiporter - Prom 775 - 834 5.9 Predicted protein(s) >gi|197325083|gb|DS990383.1| GENE 1 1 - 748 652 249 aa, chain - ## HITS:1 COG:Cj1654c KEGG:ns NR:ns ## COG: Cj1654c COG3004 # Protein_GI_number: 15792959 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter # Organism: Campylobacter jejuni # 4 249 7 252 389 345 78.0 6e-95 MLLKLKNLLHNEAFGGILLIVCTALALLIQNGPYSSHYRAFLNLDVGFNIGNFVLNKPFL LWVNDGLISIFFFAIGLELKKEFTQGDFKNPKNITLPFIAALGGIIVPALIFAFINFNDS YVLKGWAIPTATDTAFALAILIMCGKHIPSSLKVFLLSLAIFDDVGAILIIALFYTTKLS LAALIVASIAILLMLLLNIFGIAKKSFYFICSVILWVSVLKSGVHATLAGIITAFLIPMN TKEGNPFLE Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:23:29 2011 Seq name: gi|197325082|gb|DS990384.1| Helicobacter canadensis MIT 98-5491 supercont2.17 genomic scaffold, whole genome shotgun sequence Length of sequence - 849 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 365 70 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation 2 1 Op 2 . - CDS 426 - 794 145 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) Predicted protein(s) >gi|197325082|gb|DS990384.1| GENE 1 2 - 365 70 121 aa, chain - ## HITS:1 COG:jhp1161 KEGG:ns NR:ns ## COG: jhp1161 COG0424 # Protein_GI_number: 15612226 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Helicobacter pylori J99 # 2 118 3 119 190 90 44.0 1e-18 MLRLCSTSLSRQQILKENGIAFTQCDNGFDEETLELSNPRSFVYTAAICKHKKALETYGL ELPLLVVDSVIECANTLQRKPKNQKEAEKFLQMQNGNSIHILSCCILHSSKFYLINLSKT S >gi|197325082|gb|DS990384.1| GENE 2 426 - 794 145 122 aa, chain - ## HITS:1 COG:jhp0744 KEGG:ns NR:ns ## COG: jhp0744 COG0736 # Protein_GI_number: 15611811 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Helicobacter pylori J99 # 4 119 2 118 119 128 62.0 3e-30 MFELGIDLVSIARIETFLQRFNQKGLARFLNAEEIKLAKNSQTIAGFWAAKEACSKALKC GISKELNFHDMIISKDKKGAPLLTLTKNKMEHFNLHSLSLSISHDSGFAIAVVAVIFKNK ET Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:23:29 2011 Seq name: gi|197325081|gb|DS990385.1| Helicobacter canadensis MIT 98-5491 supercont2.18 genomic scaffold, whole genome shotgun sequence Length of sequence - 832 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 711 887 ## COG0104 Adenylosuccinate synthase Predicted protein(s) >gi|197325081|gb|DS990385.1| GENE 1 1 - 711 887 236 aa, chain + ## HITS:1 COG:jhp0239 KEGG:ns NR:ns ## COG: jhp0239 COG0104 # Protein_GI_number: 15611309 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Helicobacter pylori J99 # 1 235 177 410 411 287 58.0 9e-78 LKAKFDSYAEALLPFVVDTTSLLWAAMDRGEKILCEGAQGSMLDIDHGTYPFVTSSTTTA SGACSGSGISPRELGNVIGITKAYCTRVGNGPFVTEEEGEIGELLRQKGGEFGVTTGRAR RCGWLDAVAVKYACRLNGVSELAMMKLDVLDGFNEVKVCTQYQDKNGKILETFPFDFEGI KPIYKTFKGWDKTAGIKEFDKLPQAAQEYILELEKFIGVKFSMISTSPDRNDTIFR Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:23:30 2011 Seq name: gi|197325080|gb|DS990386.1| Helicobacter canadensis MIT 98-5491 supercont2.19 genomic scaffold, whole genome shotgun sequence Length of sequence - 775 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 6 - 65 4.6 1 1 Op 1 . + CDS 88 - 627 669 ## WS0063 hypothetical protein 2 1 Op 2 . + CDS 620 - 773 68 ## gi|253828191|ref|ZP_04871076.1| Fe-S cluster redox enzyme Predicted protein(s) >gi|197325080|gb|DS990386.1| GENE 1 88 - 627 669 179 aa, chain + ## HITS:1 COG:no KEGG:WS0063 NR:ns ## KEGG: WS0063 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 176 1 177 182 196 55.0 4e-49 MICCAGKIESFSFAKSIGIGLIESAMNLTQLIFYEKPSEIVFVGTCGCYDDSKPLLEIFE SQSAANIELSFLQQDSYTPLDNCISLENVSHETLSNIVNSSNYITTNSSLAQKLTKLGIL YENMEFFSVLQVAKHYEIPALGIFCSTNHIHKESQKEFFSNHKKAMQNLEDYIRTRKNG >gi|197325080|gb|DS990386.1| GENE 2 620 - 773 68 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|253828191|ref|ZP_04871076.1| ## NR: gi|253828191|ref|ZP_04871076.1| Fe-S cluster redox enzyme [Helicobacter canadensis MIT 98-5491] Fe-S cluster redox enzyme [Helicobacter canadensis MIT 98-5491] # 1 51 1 51 346 111 100.0 2e-23 MDKQNVFGFTLNSLSDSLKDFPKFRAKQIYHWLYVHYENDFEKMENLPKNL Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:23:38 2011 Seq name: gi|197325079|gb|DS990387.1| Helicobacter canadensis MIT 98-5491 supercont2.20 genomic scaffold, whole genome shotgun sequence Length of sequence - 734 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 28 - 210 179 ## WS2057 ATP phosphoribosyltransferase regulatory subunit 2 1 Op 2 . + CDS 207 - 732 610 ## COG0104 Adenylosuccinate synthase Predicted protein(s) >gi|197325079|gb|DS990387.1| GENE 1 28 - 210 179 60 aa, chain + ## HITS:1 COG:no KEGG:WS2057 NR:ns ## KEGG: WS2057 # Name: hisZ # Def: ATP phosphoribosyltransferase regulatory subunit # Organism: W.succinogenes # Pathway: not_defined # 2 60 227 285 286 66 45.0 3e-10 MILAPLFYSPMSYYKGMLFRFFLENQTMILGGDYEILEQRACGFGIYTDCVILHLIKEKK >gi|197325079|gb|DS990387.1| GENE 2 207 - 732 610 175 aa, chain + ## HITS:1 COG:Cj1498c KEGG:ns NR:ns ## COG: Cj1498c COG0104 # Protein_GI_number: 15792813 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Campylobacter jejuni # 3 163 2 163 416 221 64.0 7e-58 MRTKADLIVGIQWGDEGKGKMVDLLAQNYDYVVRYQGGHNAGHTIVVNGKKYALHLIPSG ILYPQCKNIIGNGVVISPSALLEEMQQFQNLEGRLFISNKAHLILSYHEFLDKLNEKKAK KAIGTTGKGIGPAYTDKVARKGFRIGELKDTQTLCEKVLELMEEKDIINLGGEIP Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:23:41 2011 Seq name: gi|197325078|gb|DS990388.1| Helicobacter canadensis MIT 98-5491 supercont2.21 genomic scaffold, whole genome shotgun sequence Length of sequence - 573 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 279 398 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 358 - 417 14.2 Predicted protein(s) >gi|197325078|gb|DS990388.1| GENE 1 3 - 279 398 92 aa, chain - ## HITS:1 COG:Cj0982c KEGG:ns NR:ns ## COG: Cj0982c COG0834 # Protein_GI_number: 15792309 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Campylobacter jejuni # 1 92 1 93 279 98 50.0 4e-21 MKKIFLIVMLGFLGLGLVGCGEAQQNASNSLEAIKQKGVITIGVFSDKPPFGFINKEGGN DGFDVQVSRQIAKDLLGDSSKVKFELVEAASR Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:23:41 2011 Seq name: gi|197325077|gb|DS990389.1| Helicobacter canadensis MIT 98-5491 supercont2.22 genomic scaffold, whole genome shotgun sequence Length of sequence - 568 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 207 243 ## gi|289524486|ref|ZP_06441340.1| GCN5-related N-acetyltransferase 2 2 Tu 1 . - CDS 196 - 546 305 ## APECO1_O1R81 hypothetical protein Predicted protein(s) >gi|197325077|gb|DS990389.1| GENE 1 1 - 207 243 68 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289524486|ref|ZP_06441340.1| ## NR: gi|289524486|ref|ZP_06441340.1| GCN5-related N-acetyltransferase [Anaerobaculum hydrogeniformans ATCC BAA-1850] GCN5-related N-acetyltransferase [Anaerobaculum hydrogeniformans ATCC BAA-1850] # 6 68 1 63 63 110 100.0 2e-23 NWSQSILAENCECANQPLAEHIHRVRHLQQPHAAHLGQRWVLATGAHDRAPVVEDPARLA GLPYWLAE >gi|197325077|gb|DS990389.1| GENE 2 196 - 546 305 116 aa, chain - ## HITS:1 COG:no KEGG:APECO1_O1R81 NR:ns ## KEGG: APECO1_O1R81 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 32 82 104 154 167 88 86.0 9e-17 MKRERMLTIRVTDDEHARLLERCEGKQLAVWMRRDQRKITQGQCQRFVNTDVGVPQGSQQ HPAMQIRNIMVQGADFRVSRLYETRKPKTIHVVAQVADVLQQQSLHVRSRIGDSFC Prediction of potential genes in microbial genomes Time: Sun Jul 10 17:23:50 2011 Seq name: gi|197325076|gb|DS990390.1| Helicobacter canadensis MIT 98-5491 supercont2.23 genomic scaffold, whole genome shotgun sequence Length of sequence - 1683 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 9/0.000 - CDS 2 - 800 777 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 2 1 Op 2 . - CDS 797 - 1417 776 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 1584 - 1643 6.0 Predicted protein(s) >gi|197325076|gb|DS990390.1| GENE 1 2 - 800 777 266 aa, chain - ## HITS:1 COG:Cj1121c KEGG:ns NR:ns ## COG: Cj1121c COG0399 # Protein_GI_number: 15792446 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Campylobacter jejuni # 4 265 2 263 386 359 64.0 2e-99 MSFRIFLSPPQMGKNEQKYVDEAFRSNYIAPLGEFVNSFELAMQDYTKSPNALALSSGTA ALHLALRVAGITKGDLVLASTFTFIGSIVPILYQGATPIFIDSDSSWNLSPKLLREALES LKTKPKALILTHLYGQCAKISEIAEICKEYGVLLIEDAAESLGAFYKGQHTGTFGEFGAL SFNGNKIITTSGGGMLLGKDSSQMQKARYYSTQARENLPYYEHLDYGYNYRLSNICAAIG LGQLEEIEDKVAKRRKIFDWYQENLS >gi|197325076|gb|DS990390.1| GENE 2 797 - 1417 776 206 aa, chain - ## HITS:1 COG:NMB1820_2 KEGG:ns NR:ns ## COG: NMB1820_2 COG0110 # Protein_GI_number: 15677656 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Neisseria meningitidis MC58 # 26 202 3 178 190 118 37.0 6e-27 MEKFAIVGAGGHGRVVADIILACGGEIAFVLDDSPQGKILAHKNAISPKEFLILALQKKV KIALAIGNCQARRAFFEVFKQQGFEIPSLIHPSAIISKNAKISEACVVMPNVVVNAGSTI ESGVILNTGCVVEHDCKVGEFSHLAPKSTLCGGVSIGKDSHIGAGSVVIEGKSVGDGCMI GAGSVVINDIQSFKKVVGNPAKKELQ