Prediction of potential genes in microbial genomes Time: Tue May 24 01:49:43 2011 Seq name: gi|197283049|gb|ABQU01000001.1| Helicobacter pullorum MIT 98-5489 cont2.1, whole genome shotgun sequence Length of sequence - 15696 bp Number of predicted genes - 16, with homology - 15 Number of transcription units - 6, operones - 3 average op.length - 4.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 1237 1180 ## CJE1151 hypothetical protein 2 1 Op 2 . - CDS 1237 - 2049 290 ## CJE1143 hypothetical protein 3 1 Op 3 . - CDS 2056 - 2181 228 ## 4 1 Op 4 . - CDS 2259 - 3149 814 ## CJE1139 hypothetical protein 5 1 Op 5 . - CDS 3152 - 6682 1816 ## COG3523 Uncharacterized protein conserved in bacteria - Prom 6849 - 6908 11.2 + Prom 6724 - 6783 8.0 6 2 Tu 1 . + CDS 6887 - 7402 736 ## COG3157 Hemolysin-coregulated protein (uncharacterized) + Term 7422 - 7471 5.9 + Prom 7534 - 7593 8.8 7 3 Tu 1 . + CDS 7732 - 8436 543 ## CJJ81176_pTet0011 cpp16 + Term 8635 - 8682 0.3 8 4 Tu 1 . - CDS 8447 - 9175 671 ## COG1432 Uncharacterized conserved protein - Prom 9282 - 9341 3.5 9 5 Op 1 . - CDS 9353 - 9658 249 ## CJJ81176_pTet0010 cpp14 10 5 Op 2 . - CDS 9685 - 9894 202 ## gi|242310288|ref|ZP_04809443.1| predicted protein - Prom 9967 - 10026 5.2 11 6 Op 1 9/0.000 - CDS 10190 - 11107 394 ## COG3520 Uncharacterized protein conserved in bacteria 12 6 Op 2 . - CDS 11104 - 12831 840 ## COG3519 Uncharacterized protein conserved in bacteria 13 6 Op 3 . - CDS 12828 - 13220 219 ## CCC13826_1183 hypothetical protein 14 6 Op 4 6/0.000 - CDS 13220 - 14674 1014 ## COG3517 Uncharacterized protein conserved in bacteria 15 6 Op 5 . - CDS 14682 - 15170 625 ## COG3516 Uncharacterized protein conserved in bacteria 16 6 Op 6 . - CDS 15237 - 15695 328 ## gi|224438667|ref|ZP_03659559.1| putative nucleobase:cation symporter Predicted protein(s) >gi|197283049|gb|ABQU01000001.1| GENE 1 1 - 1237 1180 412 aa, chain - ## HITS:1 COG:no KEGG:CJE1151 NR:ns ## KEGG: CJE1151 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_RM1221 # Pathway: not_defined # 59 412 68 412 979 135 30.0 4e-30 MENNEQNVTETLENAINQGLQEAQTIVEDTREKVGNVSTGASMLNMGSEIFSDKSLISTL QPLTHTIHIITSKLEKQLEIAEITLEYINTDDSITIVGKVAGNTINTWILTEGMYLSKVI AQEVVQVATKGKTPIGIVIFSAGSIISFFFAGKAEEIFKDLYFNQGRDTFKPLENFLQRH FNFPAKPSCPKGSTMPDGSCAPSPQEFWYPLFSFLFLSPYPKPSQAHQEALAKTKELKSK ITLASSPHIQSDVSSGYIDERDLQEYKEQQYVLQKEQRLYTQALQDYTQELAYKSSILNL YLERLGDSILPHITENRGLTYNEALNLVSKNNYMIKILDESDIDSIDVNSPFAYLRALFL CENIIVVDEQGNPTLNESNLFKHLGYKDDAAIIFALDKQTLTKDYLNTRKSL >gi|197283049|gb|ABQU01000001.1| GENE 2 1237 - 2049 290 270 aa, chain - ## HITS:1 COG:no KEGG:CJE1143 NR:ns ## KEGG: CJE1143 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_RM1221 # Pathway: not_defined # 26 267 5 247 247 69 27.0 9e-11 MRFYKQKRFYIPLLTLLILLIIATALLYKPLKLVYWANEIYPKEKQILQEYERNIANPST FFANYTEFQPKLKDFQELNKQIQTIKRDFIIMDKVGLEIDYLNAIVMLAWKFSYLSKNKK LFFSYPETQTLNQSQMQQYKEILTSTQELKKAIPKEQFQFAQTYEDFYQFLSKNTINSSF KIYINNVNRLLLNIFFLLSIYSDNYCPIPYRYTETLLPRIQESYMILKELKPNADVLRHI KQSSYEEFVRELSNFIKGIQEFLSTCKRID >gi|197283049|gb|ABQU01000001.1| GENE 3 2056 - 2181 228 41 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKVSINNLKGYAELEKILEIAEITLEYINTDDNIKIIRKVA >gi|197283049|gb|ABQU01000001.1| GENE 4 2259 - 3149 814 296 aa, chain - ## HITS:1 COG:no KEGG:CJE1139 NR:ns ## KEGG: CJE1139 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_RM1221 # Pathway: not_defined # 3 294 5 296 299 246 50.0 8e-64 MNEEIGIIIENLEDCITTKKVHIFNTLGGIIGSDPQCAFCVQNKREEIQKQHIKISFEEG FFTISPMQGASVFYGDSFSEMKGDYETVINIGDTFRAGDITFRFASIKEVNELLASNRVE IKDISNDTGMDEIEIKPRGQVKTSDFQEKQNIKEKLLGEKKYDIMENNIDYTKIININKQ QTQDFQYANILKALQQSLQDLKSKQKSATLNEYANINIKDFESIIENIPLIKSTRLMNTL VLSLIAKELYSPIFEEMEEDIFIKYLQSAIQGNIKEDKILFENLAIKALENYIKKL >gi|197283049|gb|ABQU01000001.1| GENE 5 3152 - 6682 1816 1176 aa, chain - ## HITS:1 COG:VCA0120 KEGG:ns NR:ns ## COG: VCA0120 COG3523 # Protein_GI_number: 15600891 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 18 1145 22 1155 1181 197 19.0 1e-49 MWLQKIFNFIKSKTFILIMLFIALVVMSLSFWFWGPLIAFNEVYIFGSGYLRFGIILIVW VIIFFSFLMKPIINFFASLKSKKRLKLKEFKKEANEFLFRAKRNFSISLQDAKNTWKKDI KMKNLPLFIIIGNEGAGKSTFINYSNIEYPLSDSLESYKKLHKSTTNFALYVSKKGALLD TEGNYFSQEDFFNPSNSDELPEDDLEKNKDFLIKKNIWQNFLTFLNKNFFHSKLNGIILV IDTTSFLNNPKEYSQSLIRHLTKRVNDCEHFLNLKLPIYIVFSKLDLIEGMKEYFDIFND KIANKILGISFQDKINENNLYKEFQEISESLQLSFMQKNSNIYSLEEKNRIYLFLKQLDN LFALVVKFIIEMQQENALKNNSYIRGVYFVSAYQENIPRNFLLDAVCDKYALKKSLAKVK PLYSKQSYFVKSLLEDIIFKDYSLSKTKGLLKKTALLSTILIISLCTYFVSFYLINKTNL EVSKSVTTSKALESLLDGLHYEELTIKEKADLLAGMKNILSVYPELAQNQHIMQYFSLNL SYKGFKKAREIYQMLNEDVLKNTLLKEMETILQTDNDKNNLIKTLYIYQSLFEQKYLNKE LLKIWINENWGFLEKYQITKGDFLSGIDELKEIDVQNFAIDEESIEIGINKLTTVSRVQR IYILFNFLNSDKPKEKYFIKEELGFLANNVFSEKSKINFVDKIYTKQGMSSFLKELNQQI GNVIHIEEWMLRGGISKESESVITLGILKLYLAEYQQKWLEILASISPQKYNTKSSMINE LEILSKKGNPILLLIGIVSANTNLNDASLLSEAYSLGLNATEIKSNFISITNAFEPYHII AKENSFLMTGAAAVGINSSDNEKIMETINANISNMQNKIVNFSADNMQNTEEKIAYSLGK IKEVDDPFVVFANNIRKLPKDLERYYNELSQYAWNLIESYGVSLFNRAWINEIYTPFINN IAPYYPFNKESTSELSLDSFKQFFGKNGSLNNFYKKYLSDVLLRKKDHYAVNAELSTKLS FSKEFLDFYTKAMSLSYLMLNDNDNIKVIFTLHSLDLSADFAYIELKYQDKIMRYDHTLN SNLQIVGEQFINGASLVLTAYNYHNPDVIHNKTYEGEWGWYKFIMDSSRNNNGYSIIFNG NKKLYFDFSIINGAKNLNQIITILDDFKIVENITRN >gi|197283049|gb|ABQU01000001.1| GENE 6 6887 - 7402 736 171 aa, chain + ## HITS:1 COG:YPO3708 KEGG:ns NR:ns ## COG: YPO3708 COG3157 # Protein_GI_number: 16123846 # Func_class: S Function unknown # Function: Hemolysin-coregulated protein (uncharacterized) # Organism: Yersinia pestis # 1 167 1 167 172 214 63.0 9e-56 MAQPVYIKIEGATQGLISSGASTEASIGNRYQAGHEDEIMAQEVSHKVTVPVDQQSGQPS GQRVHKPFIFTCSLNKATPLLYNALTKGERLPTVEIYWFRTSTSGGQEHYFTTKLEDAII TDIDLVSPNAQDADNHNKTELFRVSLNYRKIIWEHTAAGTSGSDDWRENKA >gi|197283049|gb|ABQU01000001.1| GENE 7 7732 - 8436 543 234 aa, chain + ## HITS:1 COG:no KEGG:CJJ81176_pTet0011 NR:ns ## KEGG: CJJ81176_pTet0011 # Name: not_defined # Def: cpp16 # Organism: C.jejuni_81-176 # Pathway: not_defined # 1 234 1 234 234 338 79.0 1e-91 MKQEIYTSKFYISKRNGKEVCFKLDFEIKICKERQKIYYVDISAIIDYQYLKDEGGVIPN TNKNRNYWTLEYDFNSWNFHSSIMLHQDYRSLGIGTFVINKMLEIALNYIPTARLSGKLS EVDEVKLENHIRRDRMYKKLGFVFNESNTGFSIDSISVLKIRKDFDYIQEVCMLDVCYQL GKLQYEKEKSDKLLKCYKNDLYEVNSKNDTLRARNKLMFFLLIALIFLVIYLAK >gi|197283049|gb|ABQU01000001.1| GENE 8 8447 - 9175 671 242 aa, chain - ## HITS:1 COG:HP1334 KEGG:ns NR:ns ## COG: HP1334 COG1432 # Protein_GI_number: 15645947 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Helicobacter pylori 26695 # 16 232 3 216 224 165 45.0 6e-41 MDSLNQNTEFSIIQPKKTAVLVDLSFFIERYNTHKSIKTMDATELAKRLKDYVWETLRRS QDYLYRVYIYDCEPLDKNVPMPPIEKSDKSKNLSKTATYKFRSELLKHLRRQPYFAVRLG EIDENSFQWKFKNYDKFKKILRKEIDVSELSNEDFVLDIKQKGVDMKIGLDIATLANKHQ VEKIILITADSDFVPAVKHARKEGLIVQLDPMRFPETQIKKGLLEHIDILSSVFINKNKN GN >gi|197283049|gb|ABQU01000001.1| GENE 9 9353 - 9658 249 101 aa, chain - ## HITS:1 COG:no KEGG:CJJ81176_pTet0010 NR:ns ## KEGG: CJJ81176_pTet0010 # Name: not_defined # Def: cpp14 # Organism: C.jejuni_81-176 # Pathway: not_defined # 2 101 1800 1900 1932 107 59.0 1e-22 MDGKIFVELENLVYKQDNQLLSLVNEVSFRSFITKVNNFYNNLDRFTSQQNAQIQKIELE ITELKSITGDNTPKHKRKDYLEALREDNGIVMEETEKMSKQ >gi|197283049|gb|ABQU01000001.1| GENE 10 9685 - 9894 202 69 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310288|ref|ZP_04809443.1| ## NR: gi|242310288|ref|ZP_04809443.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 69 1 69 69 103 100.0 4e-21 MPQKRVYLYIPFKDKEKARLLGAMWNDKSKQKEIKSIFDRNIETLSKDYQKEYKILNTKA YLLTEKKHH >gi|197283049|gb|ABQU01000001.1| GENE 11 10190 - 11107 394 305 aa, chain - ## HITS:1 COG:PA1661 KEGG:ns NR:ns ## COG: PA1661 COG3520 # Protein_GI_number: 15596858 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 23 298 49 328 335 89 25.0 1e-17 MNNFASYDFYKLLSKLLETYNKNEIFLRTNKELKHPHREIESVNINMDTFNQELAVQIMT NFMGLHGNTSQLPSYMLDKLSRNEDGNEGWTLFFDFFNNYILWIFFESLSIRNYPRSFKS DFTDSISYILFKMLGINDSKIAKKYLPFAPLLLSLRKPKNYIERVLCSNFNLHNRLHILE NLPHQILIASSQINKLGIKNNILGKNCILGTKFLSFQNKIAIYIHDIDYLAAIEYLPGRN KYQDLKDSITFLTNSEFCVDLYLKINLSEKMIVKLGDESVAKLGWGTILGKAKKDYLIMR VDLCK >gi|197283049|gb|ABQU01000001.1| GENE 12 11104 - 12831 840 575 aa, chain - ## HITS:1 COG:VCA0110 KEGG:ns NR:ns ## COG: VCA0110 COG3519 # Protein_GI_number: 15600881 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 7 575 6 589 589 264 29.0 5e-70 MKDNIFYFQQELSHLYAEREKFVKKFPKLAPFLAYDSKDPDIERMIENFAILTARIHQEM DQNIPHIAESLINIVAPNYTNALPSFCLQEFSFDKDNKETKVFIPKGSSVKSIPIGKCIC EFKTVYDIYLYPLIINDILLGSDRQYYTMDLKFEVDRKDLTIKDLNLDKIHLYLGDDIYT SSTLLLYIHLYLKELKLVCLDTKETFYLNPHNIKPMGLNSQESMLSYNDLGFEAFSLLRE YFFLPEKFNFVIIEGLDVLENCKGKCFELEFKFSKALPKNCIFRKEMFSLSMTPIVNIFE KSAEPLINKHDKDSYRIFIDRMQLESYEIIQVKQVKAHNSNGERRILKNYDSFERFGFLQ EEKEEFYSISNRTNSKGETYKEIEFFSKTSYEETITIDTICCNKNLPSKLKIGDINSCDV KSVKTKNVKTPSIMREVLVNGNLLWKLVSMLSFSYKTMLDKTSFLSVLESYSFVNDAENN EVIKLFKKAIVDIKGRDTYLVDGIVTKRGIITTISIKDSEFYSLGLGEIYRFGLVMSRFF ASFASVNSFCEVEVKCLDSNETLHYPASFGKKDLI >gi|197283049|gb|ABQU01000001.1| GENE 13 12828 - 13220 219 130 aa, chain - ## HITS:1 COG:no KEGG:CCC13826_1183 NR:ns ## KEGG: CCC13826_1183 # Name: not_defined # Def: hypothetical protein # Organism: C.concisus # Pathway: not_defined # 2 130 3 129 129 87 38.0 2e-16 MLLDKIIHKLDDQNASVPFHQDRLYDIKNNVKILLNSKLDDCLTFNDLGSFSNAVELNFN SSDLCQIMAKEIARIIQQYEKRIKILSISYDNSLTPWRLTFLLRFTMRDDNFQECNLEII FKNNRYCEVV >gi|197283049|gb|ABQU01000001.1| GENE 14 13220 - 14674 1014 484 aa, chain - ## HITS:1 COG:VCA0108 KEGG:ns NR:ns ## COG: VCA0108 COG3517 # Protein_GI_number: 15600879 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 3 483 5 491 492 628 59.0 1e-180 MATDKTVKMPIIEGIMKQGKYSQGDESYSIAKRGVVEFISAIVKDDNAENKINKFSLDEM ISHIDTLLSQQMDEILHDPVLQKLESTWRGLQFLVERTDFNENIKINLFNVTQEEALEDF DNNLDITQSVIYKNIYSSEYGQFGGEPVGAIIGDYQLGNSNPDMTFLNKMASIAAMSHAP FLTSCGPSFFRLNNYAELANIQDLNSLLEGPQYTRWHTFRESEDAKYTGLMVTRFLTRSP YDPKENPIKTFNYKENVHTSHDHLLWGNSAYTFATRLTESFAKYRWCGSIIGPRSGGTVK DLPTYVFESFGTMQSKIPTEVLITDRREYELAEAGFIALTLRRDSNNAAFFSANSALKPK VFANTPEGKEAETNYRLGTQLPYIFLVSRLAHYLKVLQREEIGSWKEKSDIENGLNEWIR QYISDQENPPSEVRSRRPFRGAKINVEEVAGEAGWYKISLNVRPHFKYMGGNFELSLVGK LDRE >gi|197283049|gb|ABQU01000001.1| GENE 15 14682 - 15170 625 162 aa, chain - ## HITS:1 COG:ECs0233 KEGG:ns NR:ns ## COG: ECs0233 COG3516 # Protein_GI_number: 15829487 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 3 160 6 166 166 142 51.0 2e-34 MSDGSYAPKERINITYKAKTNGQNADVELPLKLMVMSDLTGGSETPLEEREILSINKNNF NQIMQKMDINANFSVKNTLGTGAEELDVNLKISSMKDFSPDNIIKQVPELNKLLQLREAL VALKGPMGNIPNFRKAVAEALKDEKTKAQLLLEIKQEENQSE >gi|197283049|gb|ABQU01000001.1| GENE 16 15237 - 15695 328 152 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224438667|ref|ZP_03659559.1| ## NR: gi|224438667|ref|ZP_03659559.1| putative nucleobase:cation symporter [Helicobacter cinaedi CCUG 18818] # 2 148 207 345 349 86 40.0 4e-16 EKHNRIEAKNIISISVNHFINKFYENIIKLKFENGELFCKEEILNYFLEKNSQPSQQVEP PKETNPKNNKKIKKDFEKIFADINEKNNGDSIFHNINILREMAKTFEEKGMQKNAEVIYT QLINIMEQTPLKDYLLEDYMKAKEKTNRVQLS Prediction of potential genes in microbial genomes Time: Tue May 24 01:50:25 2011 Seq name: gi|197283048|gb|ABQU01000002.1| Helicobacter pullorum MIT 98-5489 cont2.2, whole genome shotgun sequence Length of sequence - 25281 bp Number of predicted genes - 25, with homology - 24 Number of transcription units - 6, operones - 5 average op.length - 4.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 828 396 ## CCC13826_1180 putative nucleobase:cation symporter - Prom 854 - 913 14.1 + Prom 801 - 860 10.8 2 2 Op 1 . + CDS 965 - 1453 466 ## CCC13826_1177 type VI secretion lipoprotein 3 2 Op 2 8/0.000 + CDS 1443 - 2849 1037 ## COG3522 Uncharacterized protein conserved in bacteria 4 2 Op 3 . + CDS 2842 - 3627 616 ## COG3455 Uncharacterized protein conserved in bacteria 5 2 Op 4 . + CDS 3639 - 4205 549 ## Gdia_1612 hypothetical protein 6 2 Op 5 . + CDS 4242 - 4862 573 ## COG2849 Uncharacterized protein conserved in bacteria 7 2 Op 6 . + CDS 4850 - 5491 481 ## gi|242310300|ref|ZP_04809455.1| predicted protein 8 2 Op 7 . + CDS 5495 - 5887 467 ## gi|242310301|ref|ZP_04809456.1| predicted protein 9 2 Op 8 . + CDS 5884 - 6552 249 ## gi|242310302|ref|ZP_04809457.1| predicted protein 10 2 Op 9 . + CDS 6542 - 9379 4470 ## PROTEIN SUPPORTED gi|239522701|gb|EEQ62567.1| ribosomal protein L7/L12 11 3 Op 1 . - CDS 9537 - 10250 346 ## Swoo_0708 hypothetical protein 12 3 Op 2 2/0.000 - CDS 10262 - 11308 667 ## COG4938 Uncharacterized conserved protein 13 3 Op 3 . - CDS 11292 - 12449 576 ## COG1479 Uncharacterized conserved protein - Prom 12682 - 12741 9.3 14 4 Op 1 . + CDS 12864 - 14375 1212 ## gi|242310307|ref|ZP_04809462.1| predicted protein 15 4 Op 2 . + CDS 14372 - 14665 161 ## gi|242310308|ref|ZP_04809463.1| predicted protein + Prom 14902 - 14961 6.6 16 5 Op 1 . + CDS 15020 - 17074 1201 ## gi|242310309|ref|ZP_04809464.1| predicted protein 17 5 Op 2 . + CDS 17074 - 17529 221 ## gi|224438719|ref|ZP_03659601.1| hypothetical protein HcinC1_11830 18 5 Op 3 . + CDS 17526 - 17927 236 ## gi|242310311|ref|ZP_04809466.1| predicted protein 19 5 Op 4 . + CDS 17924 - 18364 263 ## gi|242310312|ref|ZP_04809467.1| predicted protein 20 5 Op 5 . + CDS 18361 - 18507 154 ## gi|242310309|ref|ZP_04809464.1| predicted protein 21 5 Op 6 . + CDS 18511 - 18651 58 ## + Term 18700 - 18731 -0.8 22 6 Op 1 . - CDS 18710 - 20044 1451 ## CJE1110 hypothetical protein 23 6 Op 2 . - CDS 20032 - 20367 349 ## HH0255 hypothetical protein 24 6 Op 3 . - CDS 20411 - 20854 453 ## HH1752 hypothetical protein 25 6 Op 4 . - CDS 20866 - 25281 2643 ## CCC13826_1171 hypothetical protein Predicted protein(s) >gi|197283048|gb|ABQU01000002.1| GENE 1 3 - 828 396 275 aa, chain - ## HITS:1 COG:no KEGG:CCC13826_1180 NR:ns ## KEGG: CCC13826_1180 # Name: not_defined # Def: putative nucleobase:cation symporter # Organism: C.concisus # Pathway: not_defined # 8 275 8 286 426 154 35.0 5e-36 MNFYDYLKLESNLESLQDYHLLEAEMAKYKTLNHSNIQWEIVYELSLEILQSHSLDMKFC LYLTLACIQLNNEEKFGVLLEFLKYAKEFLWQENTTTISKKQKEAQKKKLKNIIITFTEA GNSHLNIASHIDNFNNLLIDFENLLSCQFTRFEKQHNNKVDTSIPSEFSLHKSRQATDAN TLDDRGYRDYYQQLACTILENDIDNINAYALLLEAMWGRIKTLPIHDNFLTQIRKPDKQL VDFLLTNKNSELEYIQHFIKNLSLNPFWLEGLKIF >gi|197283048|gb|ABQU01000002.1| GENE 2 965 - 1453 466 162 aa, chain + ## HITS:1 COG:no KEGG:CCC13826_1177 NR:ns ## KEGG: CCC13826_1177 # Name: not_defined # Def: type VI secretion lipoprotein # Organism: C.concisus # Pathway: Bacterial secretion system [PATH:cco03070] # 3 151 2 145 155 103 41.0 2e-21 MNKKILAFFLALQIMFFLGACSNTVNVKIDNIENSNLNNRMDDVPLTIMVYQLKDIKKFE EANDTDLLTRDDSVLGKDKIDSIKLQIAPKVNVVAVKVDEGEVPYIGVLAIFANKMNKNN KIWIETSKAYGIFGDKTLHFKITKEGISFIDKKEVNRERNGR >gi|197283048|gb|ABQU01000002.1| GENE 3 1443 - 2849 1037 468 aa, chain + ## HITS:1 COG:VCA0114 KEGG:ns NR:ns ## COG: VCA0114 COG3522 # Protein_GI_number: 15600885 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 1 465 1 442 444 181 25.0 4e-45 MADKLKIAWCDGISINQAHFEQQERYIERNIDLKTIHTTSNLYGVLSVEFSKEMLLEGKI ALKNILGISKDGSIFQAPEQDLLPEPLEVSYDSLINSIIVLKIPTGLSNIADLSLQNKIP NSKYISLRSLIALRNYNDIDTDITRQLDTRNQNDFDTLALTQETRSLMLASLRMKLGILG NATLDEVEIPIAKIKNIDSNRKIELDNNFIPTCLNVAKIPIIRSFIEEMIYSIGQHKKVL SDIFKGIDQTKNTLDFSTFLSLNLLKKWHLIFSHLIKKDKLHPEFFYEKLLEFQGELAAF SVQDTFLEFIEYKHYNLSETFLPLINHLKILFSKITSPRYSMPQIINNGNGFYDLLFDNA NILQESELYLAVSADINYEDLLQNFKIHSKIHTQSKIKNIVATQLKGLNINQIVNIPSSI PYLNGYIYYKLDKKDELFKDFQNENIISIYITSSIKNPDIKMWAVLND >gi|197283048|gb|ABQU01000002.1| GENE 4 2842 - 3627 616 261 aa, chain + ## HITS:1 COG:YPO3598 KEGG:ns NR:ns ## COG: YPO3598 COG3455 # Protein_GI_number: 16123740 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 21 250 28 251 255 79 25.0 5e-15 MTKQEIRKEEEHSSLLRLSSLSGLKKNKIIDSYLEILLLTFRLSKVSSIETSTINNLKED LVNDILALNAKLNALKQYDEKDILRSQYCLSVFIDESLMRNELFINSAWASNTLTVRLFD ETLGGTNFYDIAAFWLNNPAKYKDFLEFIYVCLILGYQGKYIERKDVKERIIHLCNNIAA AITPLLNGDEETAFMKAYKISNQETWWERFLRLHLKKVLIILPIVIIVAVFLYALLELET NNAKMQKNINGTIENFISQDE >gi|197283048|gb|ABQU01000002.1| GENE 5 3639 - 4205 549 188 aa, chain + ## HITS:1 COG:no KEGG:Gdia_1612 NR:ns ## KEGG: Gdia_1612 # Name: not_defined # Def: hypothetical protein # Organism: G.diazotrophicus_J # Pathway: not_defined # 6 151 35 184 204 62 29.0 6e-09 METNEQIKEKLKSISKQLNQLKYEESLLELVKDTDIKAKATFINDKEKEVCKILSQIKKD SQADWLYHPQTPFSSFINTAPDNKELFFKYGYWYVDFLIAKLNDSPYAIIEYFGGGHYKD SKTAIRDSIKALMLRKAGIPLLIINDKENQLTSSNKEVEKAIQCFLGQPSLNFSECNIGD IVIVTNPQ >gi|197283048|gb|ABQU01000002.1| GENE 6 4242 - 4862 573 206 aa, chain + ## HITS:1 COG:FN1514 KEGG:ns NR:ns ## COG: FN1514 COG2849 # Protein_GI_number: 19704846 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Fusobacterium nucleatum # 43 166 185 304 503 63 34.0 4e-10 MINKKILTLSLLFVFLCGIFYFSYKNIHTATTLNGESTKIITLNNISYDIYNFELFSGEF INVYDNGNKKMILKIRKGKLNGTITEYYSNGIIKFIGDYYNNQMANGCASFYYQNGNLSH YFCYKNGKQDGSQVILYENGNMKVQAEMKQGRLMGTELIFRENGTLLYEIDNNYAIAREF DENGNFIGIPSNEKVKKIFKSIVWKL >gi|197283048|gb|ABQU01000002.1| GENE 7 4850 - 5491 481 213 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310300|ref|ZP_04809455.1| ## NR: gi|242310300|ref|ZP_04809455.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 213 1 213 213 346 100.0 6e-94 MEVVNKKRIFFIVLLLILVIGSFIFVYKNTYEATTANGQETKIFVFNDVSYDIYNFELFS GESIGKENNTLKYKNIIDNGKITKMINYYPNGNIKAELILKDDEIVFYTSRYENGNLHFM IPLVNKKYNGNIIVYYENGKIALQGNLKDGEIIDYFYIFQRNGMLKYKYNNYEVLKVNED NLLLEPIKIESEIQEFKICLSQLMKIEDYNIKE >gi|197283048|gb|ABQU01000002.1| GENE 8 5495 - 5887 467 130 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310301|ref|ZP_04809456.1| ## NR: gi|242310301|ref|ZP_04809456.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 130 1 130 130 196 100.0 4e-49 MDRFLPSRENVKKFLQDVVKDKLGENEHTDMFFSDELQDKMSEALADSITPNWLPNPNQD FNIPLNLNNSYLSLTIAPNNFPKDSNDSSSTTSPIAFKITKAHIKESSKNLFMLKYPNNI QSNIESRNIA >gi|197283048|gb|ABQU01000002.1| GENE 9 5884 - 6552 249 222 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310302|ref|ZP_04809457.1| ## NR: gi|242310302|ref|ZP_04809457.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 222 1 222 222 329 100.0 9e-89 MNHKPLTYNRFRAYLRYKFIHQHWNKYFNTKTSILAFIVYILLSLSIYLLPNNVLTQYPY LKHFTDFMDFIPAIKQMEIKTFAPELCKFYASYMFVVGVIYTLWVFVCYFYIACRQGFLS IYRNTKEFQKVNKRFSKFSKRYFVVSLIVSPLFFGFYYIFLSGYMIGYTRRGHSSTFFID YPFEMLFYIDFWQGFMICFGMPFWFWGYFNFIYWFLRIKNEQ >gi|197283048|gb|ABQU01000002.1| GENE 10 6542 - 9379 4470 945 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239522701|gb|EEQ62567.1| ribosomal protein L7/L12 [Helicobacter pullorum MIT 98-5489] # 81 945 1 865 865 1726 100 0.0 MNNNQEKSSYKETGDKVTSTLGAIGAGLESTAKEVSKNLDISNLGKTIIKWSPKPISATL NVHSIATAQGEKEVFTEVYKMGVSSVTSAIGGIVGIAGGPIGAGFGAGIGNAGGNWFAEK TADFAYPLYQATKDYFQDPLSTSYLSLTITSNNFPKDSNDSSSTTSPIAFKITKAHIKES LEELFAVECEGYIESMQEQLISFSQNTLNIHPKFLIDALATFKITNPYNNNTLNFIDSAD KSYKGIISAVNYLGLNQESSNHLLQSSGTTILTKHFFKFTLTSPLIRLNYNKANRIYTNT NIIEVIKTILNFYTGRIHKEVDFSHLRYSYEVKELITQYQESDLAFVTRLAHNNGIHFYE DDNTIYFCDDYKEPLSKTIPYNPNPNNSLNELCINSFFKQENILANSFTQSSENGAYPLN LQSLNHNMSMDSNYIFYNQHEYDSQNSFTLQADLETPLKLKEKHYTLFKESVLAKSNVYH LKLGERINIDLNKGLNKEILKDYAIIALEQTLIDTALLANTINPNDNIQDTSFIRSYTNI LTIVPSIVSFAPNFKSKPIPPYSTQGIIIGQSTNIQEESNTIYSDEYGRVKVRINCFANQ EAIDNHSNKDDQSNQRYIYSYSPFLRVSTPIASDHSGFYHTPRVGDEVIISYLDNDIDKP YISGSLYNNTNPSLPSLPNNNHITSLSSKTIGTKENGRNELTFSNVKDEEEIYLKAEKDY KELIQHNSSQNILNDKDSVVDGFYTERIKKAHTQTIDLAKNVNVGGEYLTNVALSRDTMV GISNTLNVGLDNKLRVGKNSHEYIGESKSVEIGGNQNITIHKDESRNIKGNKSEVVEGHL EINIKEAFKTHIEKETHIRSKSNLLFTSNASMGFETDKNNTFISENSLSQATTDYEIQAG NQILCQVGETTICMQSDKIIFKAGGVEATLDSKGFIVKGGEVKAE >gi|197283048|gb|ABQU01000002.1| GENE 11 9537 - 10250 346 237 aa, chain - ## HITS:1 COG:no KEGG:Swoo_0708 NR:ns ## KEGG: Swoo_0708 # Name: not_defined # Def: hypothetical protein # Organism: S.woodyi # Pathway: not_defined # 67 236 84 253 255 76 30.0 8e-13 MVLEDDLAQELCNFKKQSNYDVKTIEQILHYYKPSILLRKEYMQKYYDKATLSSIFSAYS NTVSEDSLEQLAKKTIYKIILSKDKDDFPYVNIATKNKIENNLTSTFYKNESRDKAKAHL KAIFEGASNLFIYDKYCNDNSESVESFAKECFPEKKLNIFYPSLEGSFDQDLCAALKRIC SDWKIKENKDQKINSQYEDLHDRYIIIDNQIQIIFTSGIDYLMSECKDFTYIVRTLA >gi|197283048|gb|ABQU01000002.1| GENE 12 10262 - 11308 667 348 aa, chain - ## HITS:1 COG:lin0834 KEGG:ns NR:ns ## COG: lin0834 COG4938 # Protein_GI_number: 16799908 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 347 5 361 369 84 26.0 2e-16 MFTNLKIKNFKSIVDYDFEFKPFTILSGTNSSGKSSVIQSILFYSYHSNADIYLEEYLGN FGNVSNLLYFNNTRDQTIEITPSIDGKKLSPLMSNNTGDWQQLTNNHFFKFEKELFHLCS NRIGQENLSKIHKTLRSGNNGEYLFGFYEEAKNQALKNKELVSTQDSDTLSMQVEFWLTK ILDLKIKPITQKIDTNNIRIYYKDESGFELLPFNLGAGIGYLTKILILGLSLEKGNVLII ENPEVHLHPKAIAKLTDFFVFLVNAGIQVILETHSEHLLNKTRWNVFKHQISHDVVKIYY KSNAIDNFIDLNINQQGRYTCENEGNEEIVEFPTGFFDSDLDELLEMA >gi|197283048|gb|ABQU01000002.1| GENE 13 11292 - 12449 576 385 aa, chain - ## HITS:1 COG:lin0833 KEGG:ns NR:ns ## COG: lin0833 COG1479 # Protein_GI_number: 16799907 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 47 325 121 408 489 149 34.0 8e-36 MDLKTDTNSHTTNQEYHKQDQTIELEGEETLDPSLQEYDSIYPLSNIRIEKSRMSLYEIK RRIERKDIETAPDFQRESVWRQKQKSELIESVLMGIPIPVFYFFEKKDGKIQIVDGKQRI STFMDFMNDQFDLKQLNIIKSIRGKKFSSLELIQQRKIEDYQIDAYIIQPPTPEQVKFNI FDRINRGGTSLNNQEMRNALYQGRSTELINKLSQEQAFKKATANSIPSKRMKDRYIILRF IGFYMYFSKINCDFKYEGNIDEFLSKVMVFLNGTNDTYLCSELEHLFKKVMNFAHTQYGE DIFRFNNPNGSNKRAINMALFESLSYFFALCIDQNKTPTKEDVDRLKGIFDKSGKFIRGI DSVASVEYRFMEIRKFLKDEYVYKS >gi|197283048|gb|ABQU01000002.1| GENE 14 12864 - 14375 1212 503 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310307|ref|ZP_04809462.1| ## NR: gi|242310307|ref|ZP_04809462.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 503 1 503 503 916 100.0 0 MDKTKESEIYSKETIKIHIKDTHSNNPIVNAKVTLLAMGQKTGQKIPLDTPTDSNGEVLF NSKPYLKDINRFEITIEHKDYYSYPIYRTRKLCRSYEYGHLCEERFEKIPSFYYNGTTLA ISPKINPFQKYSLKTQSLKSQAKQEYCIQLQENQKSLTIYKDRNLTQESAYTLCLDTTQT QQTGQTQDLQTQSQLSQSNTTLLNFESKESLERFTKDIQELIAKDKKKGNVKLVHRFVVG ISGEYTSLLSLDKPQGRIVKIEIPKENVSDSIIANTESNQTKILKSWANTNQKITEQDIR KIAFSTIDIINRKDMSKNPLIYKALDKLIGDYRIYKDNFPQEYYVEFGRYIIQESINFHS SFYETHDIQQSNIIDIVNYSIGFWCRYLDNKYEKEWTEGGAAIFHLYENYVPKYNGDENG LDKVKHFTYSARLCFMKGPTLSFVGGMGVEIGDLLAQQIERAEKLFGRRTKIESTGFDTD DLKANKQGIDYGIELITKYRTFQ >gi|197283048|gb|ABQU01000002.1| GENE 15 14372 - 14665 161 97 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310308|ref|ZP_04809463.1| ## NR: gi|242310308|ref|ZP_04809463.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 97 1 97 97 120 100.0 3e-26 MNALKLLLLASLSIVFPILLGFTQMMIILLLQAILEHYRLEVISYFVPLCIGVIYLICVW LFLKWIFNMRNAILAGLCPITAFIGAGFFALDMYYRF >gi|197283048|gb|ABQU01000002.1| GENE 16 15020 - 17074 1201 684 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310309|ref|ZP_04809464.1| ## NR: gi|242310309|ref|ZP_04809464.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 684 1 684 684 1335 100.0 0 MDKTKESLSIRLLDSHSNPLKNQEFRLFEVQNGRRSIINTIFTSNENGEAFFNVKEVFKE GTQSFEIGLHNTLCYKRKPIYNHRYLLRNYEYGYLCEVKFAKKADDASIEKVTLKPKEYL LDNNEKIILKFYAGGDIVELEAFYDVTKIQEDEIKWGYTLLTASSQEHSKNLDTLNKNQL TNDKKDSSLFDDKISTTCCHIEKRGDIAILSGTPIDMMQDNPQAYRGKTIQIALPKTTNQ QAILIFAYKNTPNYRASQLIRLNDYPQITIDCTLAETLRAYTRQDNIATLGFGVSYVCQR LWHDNPSDAKELSKLIYIDSHSPDFIESIPNATMQSIVKEVLPRITLKEFSKDSNNKCPA IKSQIQEIKDKNLRFYVELDWDRFYMQFPLMKGLEDKILRVPAFENDINQFVKDSIKEMT YETFEYIRKTTETPKILHNNFFDSAFYEKIIEWLKSDSIQKALQDIVSSKNTNAKLIVMF DNIYQGFTENEKIFSLKGNDWESDNICKKQSLVDIKKPYKLWGQCMRAYGLGDTAFVSIF DFKEAVALYALTGKFNIYYIPSLFKITQGKDNAIDIQITEIKAYIFDGFDFIGTSGQFVG AWNYEKMEFKVFNSTRKMFREVTGSTKVISIGNVKEANENIMFNQDYQNTQKYFNLGLDF RIVTPTFKSIKVYPLSMPIQIKLN >gi|197283048|gb|ABQU01000002.1| GENE 17 17074 - 17529 221 151 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224438719|ref|ZP_03659601.1| ## NR: gi|224438719|ref|ZP_03659601.1| hypothetical protein HcinC1_11830 [Helicobacter cinaedi CCUG 18818] # 1 151 1 151 151 182 100.0 4e-45 MNVVDSFIILSKGILTAFLYSVAMFWLVIPAMLPFIFTTFIPKIHRMLLKNGSIVYWIIG GFISYIIYIVVHFVAFFFKIDIDSMYLVLLGAVIFNIYSTIYLVLFKFFSNNKQNAFLGK KEKYFLLGLNFLFALLFPTIVLIFLEMVLSI >gi|197283048|gb|ABQU01000002.1| GENE 18 17526 - 17927 236 133 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310311|ref|ZP_04809466.1| ## NR: gi|242310311|ref|ZP_04809466.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 133 1 133 133 234 100.0 9e-61 MKTLEKEISIYPTQIKAYIDDSFDFRDQPMQFVGAWDYEKISFLTKTSEYQRIIYDNAVD IVNKLPFVERDKNTSKDFKEVIMRNQDYQNTQKYFNLGCDFLVTSPTFKNIKIPKDLKFK NLFKIVITLGEYQ >gi|197283048|gb|ABQU01000002.1| GENE 19 17924 - 18364 263 146 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310312|ref|ZP_04809467.1| ## NR: gi|242310312|ref|ZP_04809467.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 146 1 146 146 223 100.0 4e-57 MNSLYVCDYSWGTPDCRLDLDAVFDIIIQITIVCLLNLVPIVLILKYRKLVNLFFILGSI IGYILSFFVAYIVLWHNAGGFAMFCIFNIVFLIPSWIMTLIFSYINRQVASNNIKSITIG FISFSLVLYTVLYCFWNFKITGRITL >gi|197283048|gb|ABQU01000002.1| GENE 20 18361 - 18507 154 48 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310309|ref|ZP_04809464.1| ## NR: gi|242310309|ref|ZP_04809464.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 6 48 642 684 684 74 79.0 2e-12 MNIYSIYNHDYQNTQKYFNLGLDFRIVTPTFKDIQAYPLSMPINIKVD >gi|197283048|gb|ABQU01000002.1| GENE 21 18511 - 18651 58 46 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFVCIFAVYAIMKSTETQIQAKYLTKRIRVVWVRNYPLMAINSKTF >gi|197283048|gb|ABQU01000002.1| GENE 22 18710 - 20044 1451 444 aa, chain - ## HITS:1 COG:no KEGG:CJE1110 NR:ns ## KEGG: CJE1110 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_RM1221 # Pathway: not_defined # 8 444 2 428 428 405 50.0 1e-111 MDRIENNNEFYSIKLLNSVKIKVNKNTNEVYFIDRGDSDIGKYTQEYSKAILKAWDIMET SPNKSYQPTYLDPNLYVGQASTLLEFNTWKDLYLQDPPKCAIAPWTKKEKAYYESLKTKR ERYKYLVIRSGLRSSVIDIPLDAIAGVDENGKLINPKYEELYKEVEANRGLAHLSDGSLM MSEWNLAAGMLGDIKGFYQSGTLGFNTRYWQIYFLVLQLNGGGKKKARYDYIPVTFLDYI DKIRYGFNGIHKDTTKAQMLTNIAKNIKPDEYGMLPYLDELIGVNWVMDFNKTHTTNENK YVIDSSGDITRDLEDKITQGLIKDPRDKDSTKESRIAFSQGVQESIWDYRDRYEQDLPNK WDEQTAKRYINTMLLAAKIASITPPQGYPNAPTYFIPEELENIYQEHKLDKKLNPTIPAM YRYDFPEYLREEIEAYAKKHNIKE >gi|197283048|gb|ABQU01000002.1| GENE 23 20032 - 20367 349 111 aa, chain - ## HITS:1 COG:no KEGG:HH0255 NR:ns ## KEGG: HH0255 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 14 111 1212 1299 1299 63 38.0 2e-09 MDYLDNLAQGDFNTYLQDDKINSSKHRDFLKDLEIIGQNNLKALYLGINAKQERKDKGMI ESDFKENKKKESRNDSNSNTKNNKTNTKQSRPKLIGRLATTIIIKDGLWIG >gi|197283048|gb|ABQU01000002.1| GENE 24 20411 - 20854 453 147 aa, chain - ## HITS:1 COG:no KEGG:HH1752 NR:ns ## KEGG: HH1752 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 5 147 9 128 128 124 53.0 1e-27 MYKYIKNIVMVTVLCLNLEAKDFVVNCDKCVIEVGFTDKEVEYFKKKMGEESFYILADDA NYYSYTLKKYLEANGIEIKYVSRLETHYTKLIFSNESIDIANLKWLYEYYLYQKGKKPHK LIDIVAPEDEINDYFNIANPKYPKENE >gi|197283048|gb|ABQU01000002.1| GENE 25 20866 - 25281 2643 1471 aa, chain - ## HITS:1 COG:no KEGG:CCC13826_1171 NR:ns ## KEGG: CCC13826_1171 # Name: not_defined # Def: hypothetical protein # Organism: C.concisus # Pathway: not_defined # 148 1285 144 1247 1255 169 22.0 1e-39 ANPFVSLYTSSPSYVFNSNLSFFNPHLQYLLTSKDTQQWLYDILFSLARDNREIIVYEWG GSIEELDFKESQANKKDLDSKDTNQSTNIQKQTKTYYLSPQGQKLKEKQPYCIRVIAKES KVFTILRDFITSFNTTKEQEVFRTLEILLKDKESLEHLRQCIIKSLKEPIIESIYSLKET KDLNKEELKENVEEVFNNLLGVIEKIYKEGSAYLYKQVLLFFLEIFNLFNIQSVFKKSNA LNFGESLAFSSNQTLLNVLKWANSKYNYALIHPILKIFTQDLVPLFALIENTMCHNTLIL DDKMLIELSSFNLNSYPKIKANLEQNLAICIKSKEAVFGYLEDSHQANQKTANLENTESK EDKQDSLNVDLRDLEVLSLKGISKGENIQIYNQDFITKALAHQMNLDNNRLFYIESPFFN SREVAELINNTKHKTNNTSYNSKNYLIITNAPKEYNAGLHKELLENILGNKINYPNVSSK DTLPKSDKLHKAPKDYNPIIDYSQYSITIKDNEQDAFVLSLSPFLFLDKEVYDELKLTHK EYERLFLDLSNDDGNTASKYADFIHKPNTIPNLLSYYSIQEHFRALKSKEEILEKEMEYF KESMKFLQEYLDSLTRENTIKYTTITNMPHNQSTNKLQYTCFEVLLLSLTYYVIKHFYRN IQTDCQKWWEIVSNYENINIEGEIIRILPKESFIKVGNNKISLCFSKQEKQRLSQEKREV FCIEELVEYLEETNANTLTNDEIAKALDEYFSSMQNLQKDITDNQNDISIHKETNSSFES MEDNIEELSKALCEMNNKISNLQNELEDKEEKGDLRQEALVLSIDAIIKEYFPFVDYFNG DKFQIAKKLTKTIISFLSVEFREFLFNELGAIYMLGIVAISKIDIKQTRQYRHLKTAIIK ERILKQQAFMQLMQMEKIKEQYQLMLTRNTDLKNLKTQDISKYKTILNIKTIQSLNIDLL KSLPQTIQNFIERFWITQYEKSKKDYEKIKFLKLTQKYLAPYATKRMDSSMQEEISYPMP INNALFSSNFANIIIGNKLQIGEFEGKESLFIQHKDTSLQGMRTYLLNKLLAYLCLDELR GMNEQLISIDDISFFYNRDYTRELPTRPRLLKLKHTSGDIQSPNNSTKQEKEAQANFNQS QENINQNKSKEALYNEYKKMEQASNNKSDEDIPLAIEAYHRVMDYLDNLAQGDFNTYLQN DKINSSKHRDFLKDLEIIGNNNLKALYLGINEKQERKDKGMIESDFKENKKKESRNDSNS NTKNNKTNTKQSRPKLIGRLATTIVDTMMGDGEEEIQKKYESEKEEDLSNIEVVGQNGID ISLVSEYSKNILRQIAKNSNYTRVVISSTARTPRRQAEIMYNNIVNKGMREQRKTYKQPG QRVLDVYEIQKKAGKNKEEIIQAMINKINELGASKVSTHCADFNVVNVVDIPHSSLGKNK EKFKSEAIRRLGKTNVLDENSCYHIVIHQQN Prediction of potential genes in microbial genomes Time: Tue May 24 01:52:40 2011 Seq name: gi|197283047|gb|ABQU01000003.1| Helicobacter pullorum MIT 98-5489 cont2.3, whole genome shotgun sequence Length of sequence - 3631 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 798 563 ## HH0233 hypothetical protein 2 1 Op 2 . - CDS 791 - 1615 178 ## gi|242310318|ref|ZP_04809473.1| predicted protein 3 1 Op 3 . - CDS 1626 - 2918 1308 ## gi|242310319|ref|ZP_04809474.1| predicted protein 4 1 Op 4 . - CDS 2905 - 3324 315 ## gi|242310320|ref|ZP_04809475.1| predicted protein - Prom 3436 - 3495 3.7 Predicted protein(s) >gi|197283047|gb|ABQU01000003.1| GENE 1 3 - 798 563 265 aa, chain - ## HITS:1 COG:no KEGG:HH0233 NR:ns ## KEGG: HH0233 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 55 224 2 175 326 127 40.0 4e-28 MDKHFLGTITCVASDRLITDENGEQFYECMTQEELNAIQVSTDKNAVKSNLFYALGRMDA ILSAVVGQITKNRYVEIVFAIKDGGKSIALNISNDRLNGNEVMALGLIEIGVGIGIAILA PSGVVGVVAGLIISSFVSYFLADLYLYLKDTTLHLWQDAKDLANSTWQNIMSLIESDERN LEERKRDITNKVADEILNLQETPNENFIKNISQENYNDLIHLLCQQQTNAKDIHQYLEDS KCIMCNIPQQSYTPLSPQGISFPYS >gi|197283047|gb|ABQU01000003.1| GENE 2 791 - 1615 178 274 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310318|ref|ZP_04809473.1| ## NR: gi|242310318|ref|ZP_04809473.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 274 1 274 274 479 100.0 1e-134 MNNHNKANKVFNPLLLRGLPYKNDEIDYKRLVLYRITKRFYDALVLLCFICALFSIPFDD NPFKDFVTFTKPLSLVLFVSHILLSCLYYYFWNQVKIQYKAQNPIIICDFKQDMGDKILT FLVVICIIIIFCVIGILSFVNISFLSVIIFFVLQVKIFCLKSIVLTENALILRYRFYGDY ALGLDSLIVVPENQLVWQNDKWSDIKPKGIWIARIIRKNGIVYFCPILLERNAWFGLSNL EKLYTILSQKLDIDIIRQTQKPFLFNNKLKENYG >gi|197283047|gb|ABQU01000003.1| GENE 3 1626 - 2918 1308 430 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310319|ref|ZP_04809474.1| ## NR: gi|242310319|ref|ZP_04809474.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 430 1 430 430 769 100.0 0 MANDKNIYSSLQIISDSDELQLKPQSQENDFGVAGQVFSNSVGVAGAYSQEKIKVLFDAN DKLDKQVGSQLIKVNFGIFNVLYKKLEQKSNEKIVKELAIEGATGYVVTKSIETGFVIKQ AAKQTGKKVGIRAGISIAARIFTGIGTGAIIGSKVPIVGTIIGAVAGGIIASKIEDKVFE DEKKEQEKIKQLNEEITKIYSKINQMSDYLIRNNYIELRELNEIEVEKLFKSASSLDITY LETIQLMLSFPHYLKKESKQEVYTPLSPQGISFPYSSITYLTSIKALKDILKEYLPKAKK IVLYTPNPFVSLYTSSPFYVFNSNLSFFNPHLQYLLTSKDTQQWLYDTLFNLARDNREII VYEWGGSIEKLDSKESQANKKDLDSKDTNQSTNIQKQTSLKDLESKESTSKNLYFKIQDT LCYNPKKQCA >gi|197283047|gb|ABQU01000003.1| GENE 4 2905 - 3324 315 139 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310320|ref|ZP_04809475.1| ## NR: gi|242310320|ref|ZP_04809475.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 139 79 217 217 272 100.0 4e-72 MVTFGYLIAILRTLNTRKIYATDKELIIKRFVGKDKAFKIGSFYFCDFSHAFTLIYADNT TISKFGEEVDSAYSFLDPLRSNNIQELYTMIKPQTQEYLSLVDERVYQNFKAKHNKIQPK FDLDFDKISELRGLRNGKR Prediction of potential genes in microbial genomes Time: Tue May 24 01:53:22 2011 Seq name: gi|197283046|gb|ABQU01000004.1| Helicobacter pullorum MIT 98-5489 cont2.4, whole genome shotgun sequence Length of sequence - 26837 bp Number of predicted genes - 44, with homology - 36 Number of transcription units - 16, operones - 8 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 443 693 ## 2 1 Op 2 . - CDS 419 - 1108 401 ## gi|242310321|ref|ZP_04809476.1| predicted protein 3 1 Op 3 . - CDS 1149 - 1349 318 ## gi|242310322|ref|ZP_04809477.1| predicted protein 4 1 Op 4 . - CDS 1405 - 1542 68 ## - Prom 1615 - 1674 6.4 5 2 Op 1 . - CDS 2200 - 2862 606 ## gi|242310323|ref|ZP_04809478.1| predicted protein 6 2 Op 2 . - CDS 2849 - 3052 231 ## gi|242310324|ref|ZP_04809479.1| predicted protein 7 2 Op 3 . - CDS 3055 - 3267 313 ## gi|242310325|ref|ZP_04809480.1| predicted protein 8 2 Op 4 . - CDS 3264 - 3623 344 ## gi|242310326|ref|ZP_04809481.1| predicted protein 9 2 Op 5 . - CDS 3633 - 4799 646 ## COG0358 DNA primase (bacterial type) 10 2 Op 6 . - CDS 4818 - 5819 667 ## PFL_4689 hypothetical protein 11 2 Op 7 . - CDS 5829 - 6416 287 ## gi|242310329|ref|ZP_04809484.1| predicted protein - Prom 6442 - 6501 3.9 12 3 Tu 1 . - CDS 6523 - 8961 1698 ## ebA2431 hypothetical protein - Prom 9014 - 9073 5.2 - Term 8979 - 9023 2.0 13 4 Tu 1 . - CDS 9088 - 9750 517 ## JJD26997_0865 hypothetical protein - Prom 9816 - 9875 3.4 14 5 Op 1 . - CDS 9882 - 10010 209 ## 15 5 Op 2 . - CDS 10070 - 10513 532 ## gi|242310333|ref|ZP_04809488.1| predicted protein 16 5 Op 3 . - CDS 10523 - 10636 57 ## 17 5 Op 4 . - CDS 10662 - 10952 349 ## JJD26997_0692 hypothetical protein 18 5 Op 5 . - CDS 10972 - 11460 287 ## JJD26997_0856 thymidine kinase (EC:2.7.1.21) 19 5 Op 6 . - CDS 11463 - 11657 186 ## gi|242310337|ref|ZP_04809492.1| predicted protein 20 5 Op 7 . - CDS 11670 - 11942 211 ## gi|242310338|ref|ZP_04809493.1| predicted protein 21 5 Op 8 . - CDS 11939 - 12112 149 ## JJD26997_0859 hypothetical protein 22 5 Op 9 . - CDS 12049 - 12369 176 ## JJD26997_0859 hypothetical protein - Prom 12460 - 12519 4.3 - Term 12400 - 12459 6.6 23 6 Tu 1 . - CDS 12526 - 12954 393 ## gi|242310341|ref|ZP_04809496.1| predicted protein - Prom 12977 - 13036 4.8 24 7 Op 1 . - CDS 13120 - 13449 242 ## 25 7 Op 2 . - CDS 13464 - 13685 243 ## gi|242310342|ref|ZP_04809497.1| predicted protein 26 7 Op 3 . - CDS 13697 - 14074 413 ## gi|242310343|ref|ZP_04809498.1| predicted protein 27 7 Op 4 . - CDS 14086 - 14952 916 ## JJD26997_0851 putative prophage LambdaCh01, recombination protein Bet - Prom 14993 - 15052 8.2 28 8 Tu 1 . - CDS 15100 - 15297 89 ## - Prom 15404 - 15463 7.3 29 9 Op 1 . - CDS 15507 - 15746 304 ## gi|242310346|ref|ZP_04809501.1| predicted protein 30 9 Op 2 . - CDS 15777 - 16124 270 ## gi|242310347|ref|ZP_04809502.1| predicted protein 31 9 Op 3 . - CDS 16133 - 17089 724 ## GSU2154 hypothetical protein 32 9 Op 4 . - CDS 17158 - 17358 84 ## gi|242310349|ref|ZP_04809504.1| predicted protein - Prom 17405 - 17464 1.8 33 10 Tu 1 . - CDS 17466 - 17741 291 ## gi|242310350|ref|ZP_04809505.1| predicted protein - Prom 17808 - 17867 5.5 34 11 Tu 1 . - CDS 17919 - 18017 131 ## - Term 18371 - 18411 1.1 35 12 Op 1 . - CDS 18477 - 18878 616 ## COG0629 Single-stranded DNA-binding protein - Prom 18899 - 18958 2.9 36 12 Op 2 . - CDS 19047 - 19415 280 ## gi|242310353|ref|ZP_04809508.1| predicted protein - Prom 19442 - 19501 7.1 - Term 19719 - 19754 -0.2 37 13 Tu 1 . - CDS 19850 - 20287 546 ## JJD26997_0847 hypothetical protein - Prom 20316 - 20375 5.5 - Term 20852 - 20895 1.4 38 14 Tu 1 . - CDS 20903 - 21958 648 ## gi|242310355|ref|ZP_04809510.1| predicted protein - Prom 21992 - 22051 12.1 + Prom 21985 - 22044 14.2 39 15 Op 1 . + CDS 22158 - 22472 351 ## gi|242310356|ref|ZP_04809511.1| predicted protein + Prom 22486 - 22545 7.7 40 15 Op 2 . + CDS 22573 - 23094 369 ## gi|242310357|ref|ZP_04809512.1| predicted protein - TRNA 23372 - 23459 69.3 # Ser TGA 0 0 - TRNA 23483 - 23557 74.0 # Cys GCA 0 0 - TRNA 23571 - 23657 65.7 # Leu TAA 0 0 + Prom 23610 - 23669 4.1 41 16 Op 1 . + CDS 23689 - 23823 102 ## - TRNA 23690 - 23764 83.4 # Gly GCC 0 0 42 16 Op 2 . + CDS 23880 - 24848 852 ## CHAB381_1420 hypothetical protein 43 16 Op 3 1/0.000 + CDS 24904 - 25536 609 ## COG0526 Thiol-disulfide isomerase and thioredoxins 44 16 Op 4 . + CDS 25536 - 26420 520 ## PROTEIN SUPPORTED gi|157804145|ref|YP_001492694.1| 50S ribosomal protein L32 + Term 26601 - 26646 2.1 Predicted protein(s) >gi|197283046|gb|ABQU01000004.1| GENE 1 2 - 443 693 147 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MANEEKNITDTIGNINTAIDGALKEGLNKLDDISNVGKSVLGTPAKIVDGMLLTDKVAKA TTEKGKFAEVYKWSVGTTGSAGGAVLGAKFLASIGSVAGPLGMSIGAIIGAAGGALAGNI GGESLAESTTNEAYSLYQTAKDFFTDS >gi|197283046|gb|ABQU01000004.1| GENE 2 419 - 1108 401 229 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310321|ref|ZP_04809476.1| ## NR: gi|242310321|ref|ZP_04809476.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 229 1 229 229 365 100.0 1e-100 MNKPTNKPLTYNRFRAYLRIKLKNKSFSKTRVFLIIAFYILCSLTLFLLPHNVLTQYPYL KYFTDFMDFIPAIKQMEIKTYAPEMCKLYASYMFVVGVVCLGYLSREIIILLLVGILRPN EKHKEFKKKAKQKFLTKPKSYLFCLLVFNLGCFWYIYNFFSGDFVGYLRMRNRDEYFIYN SFEMWYYAMKEIGFMFVVGTFSITVGNIIYFDIFKHNWSKIQWRTKKKT >gi|197283046|gb|ABQU01000004.1| GENE 3 1149 - 1349 318 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310322|ref|ZP_04809477.1| ## NR: gi|242310322|ref|ZP_04809477.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 66 1 66 66 102 100.0 6e-21 MQIESLNNTSLCNTNTMAFMEELLNLEYLQDTTNEVGNFLTQHITKDYGFSVNLRIEGVN IKDEQF >gi|197283046|gb|ABQU01000004.1| GENE 4 1405 - 1542 68 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLESLSNKDIQEALSDKQIYIKLCSIGCHSFCLLCKMDIKHENPL >gi|197283046|gb|ABQU01000004.1| GENE 5 2200 - 2862 606 220 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310323|ref|ZP_04809478.1| ## NR: gi|242310323|ref|ZP_04809478.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 220 1 220 220 414 100.0 1e-114 MEMSSYIYEHKGFRVVIVRNNHFYLGYILAHKTHYLNGLPQALLDKEREKRNIYAKHICG NVSFFKSVSKAKYGAFLIEDYLTNRDGFIIGYDNNWRNANKTLEEMESLLRCALDNEMDL MEKRKINFTFIEYILGYCKTLGNIDEKFLENFNIECKVFADFFKSNGLHYKDYGFTFDDS SDLLSLIRELKDTGSYIPDCFNSLLNVDIKNFLSFIELKK >gi|197283046|gb|ABQU01000004.1| GENE 6 2849 - 3052 231 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310324|ref|ZP_04809479.1| ## NR: gi|242310324|ref|ZP_04809479.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 67 1 67 67 114 100.0 1e-24 MEKEETSEYKVIENFYLKLLEKEVNDNLKNGYEVLGGISICQYDGIFPNHKILYAQAMIK RIKNGNE >gi|197283046|gb|ABQU01000004.1| GENE 7 3055 - 3267 313 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310325|ref|ZP_04809480.1| ## NR: gi|242310325|ref|ZP_04809480.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 70 1 70 70 110 100.0 2e-23 MKITKEMAKNAVAYINEHSFSASAYSYEDSNGEIKVYLQIDDFDFELSKDEIINRSILWL EEQKELLCEE >gi|197283046|gb|ABQU01000004.1| GENE 8 3264 - 3623 344 119 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310326|ref|ZP_04809481.1| ## NR: gi|242310326|ref|ZP_04809481.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 119 1 119 119 230 100.0 2e-59 MKTITMIGQNYCVGINPEKIFSFSIKREDGWISLNINRGEVLIPILYITNAKLRELGYAE FNTNEFWHISSEEFNDLSVISYIGRLFDNSKISYLVDLTDSFLRDLLLTCIDRYHRSIK >gi|197283046|gb|ABQU01000004.1| GENE 9 3633 - 4799 646 388 aa, chain - ## HITS:1 COG:Cj1638 KEGG:ns NR:ns ## COG: Cj1638 COG0358 # Protein_GI_number: 15792943 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Campylobacter jejuni # 44 340 42 303 605 60 26.0 4e-09 MRYKFNLEALKNIPILEVLSSFGINQIKGKFTTCLNYKSHNNNDHKPSMYVNMKQNTCKC FACNLGGNGIEIAKFAFNGDFKKACEFLHSQFNIPFLDDSIITSGFTAPSFKAPKKEVQY MNFIRDKQYQSLKVAELMPKYKQEDRLGKLKILYSFVYRYSLMTNQAKKEEYYKNRGIQA PLDKIGFLSYADVKSLEKSLISFFPLEDLTSFKIFNKNRVGWNYGYDIAIVPCFDLYSDL ITGFSVRSLNPNNRGAKELNVFCSDIVYPMPFNLTNENLRNKDFIWICEGHIDALSGISS SKREDVCFISFAGVYTYKDEILGLLRGKNVMICFDNDTAGKQGGMELGDKLKKLGVNTFI ASWDNNYNDLNDLLKANALADIKLNKVA >gi|197283046|gb|ABQU01000004.1| GENE 10 4818 - 5819 667 333 aa, chain - ## HITS:1 COG:no KEGG:PFL_4689 NR:ns ## KEGG: PFL_4689 # Name: not_defined # Def: hypothetical protein # Organism: P.fluorescens # Pathway: not_defined # 3 139 7 154 479 80 37.0 1e-13 MSRLANQIAMGFFPTDNKAVEAILDSLSSKQIPSDFNVCDPCCGEGEALSRFKRFAGVTT YGVELDEERAKKAFEKLDNLICSDALFGINKSRNAFSFLFLNPPYLDIKVGGKQTRAETE FVLRWTKTLVREGIMLLIINPTSTANMKMTKILKLNGMEVIHNFYFNNADRKNYKQYFLL LKKVDKVEMREEDYHRAISPEASVPFNEVDLGDIVIPQKTKRKILFNHIGNPKIWQIEAM LQKSNMAKNFFKRVTLPKSDKVVSIMPPNEGQSSLLLGSGFFNDEISGFLIKGGFSKKEM LISKDENSAKTQEQFVSNIYAFSTIEKKYYKLQ >gi|197283046|gb|ABQU01000004.1| GENE 11 5829 - 6416 287 195 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310329|ref|ZP_04809484.1| ## NR: gi|242310329|ref|ZP_04809484.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 195 1 195 195 387 100.0 1e-106 MSIQKAYIDNKQIFLINGLVDSCHWYYLELFGKSQIIQSISASVISGKAGYINIPKDKLP QKENKIESEFLSFWGEGKIKREITQLENGYAHCILHSNIITDGVFAFVSLNKNKGDDLEL FRQWLMGLPIPIPNDAELIVSLYETFLFQGLLFCFESWDKQSKLWLCKKIKDNDYNILTE AVEYFYFHKSLKKTA >gi|197283046|gb|ABQU01000004.1| GENE 12 6523 - 8961 1698 812 aa, chain - ## HITS:1 COG:no KEGG:ebA2431 NR:ns ## KEGG: ebA2431 # Name: not_defined # Def: hypothetical protein # Organism: Azoarcus_EbN1 # Pathway: not_defined # 4 673 27 729 757 253 29.0 3e-65 METMNFQEFLTNNADTIKNQLNKIVNPDFKGFENPKAYKKDLENLLKLKRNPFPTQATII SAGIQHLRKNKSLLISSEMGTGKTIMGIAMSYLLYKENGGNVFLMSPSHLVPKWADEIEK TLGKGDNKIVNYEIVIVKNYLTMTYFKNIKKEKGLIRFFICSKETAKLSYPREEASLLHN YIVVKTATNWQIKCASCGGVLKEFEEIPNDLIKSEPQSLELMIKVDGDYILSDDQNFLQS RVKSAEIFGESFDPIEKCKKCRKVYIPKERQHTFGSWYSGTKKEALKGVNIRIGVAEYIK KQLPKGFINLLILDEIHELKGGDTAQGYAFGQLASCSKKVVGLTGTLLNGYASSLFYILY RMNPQLMLSLGFSYNDTSLFVEKYGAFEINYSDSQELEENEGVVTRKGRKGKKIKELPKI HPLMIKDLLSMTLFLRLDEMNFKLPNYEEEVIPVSLDDEFGFTYLKYISDLSQSIIEDKG LLGALANDSLSIPDLPHLSKNAIGRNRICYAHYKAPVSDDFVTNKDKVLISEIEKELNLD RNCLVYVTFSNLGVAERIVGILKANFPDKKINFLDSKIKADKRDVWIKENPCDVLVCNPE LVKTGLDLLGFPTIIFYETGYNVSTLKQASRRAWRIGQKETCKVKFLTYANTPQQTALAL MSKKIKALNSLDGRLVTTERELASFAGECSIQEQIAQSILRGNNTSSDEIQTNGWSFIAR EWNSYEAFYLDLQQNNSLKENKSIVITQEKATSKKDYLKTHFEEIQSSLVNVTFIENGKR KSAMMTQKDILEMLETDKDNSKKNYQLSLPLF >gi|197283046|gb|ABQU01000004.1| GENE 13 9088 - 9750 517 220 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0865 NR:ns ## KEGG: JJD26997_0865 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 32 206 23 192 194 102 36.0 1e-20 MTNLAQKEILIEVELDELLENPWTYFDCNLLVNGKEVRISVDEFAENPLEWDCNPTLLSL LRRYNIGVKTIIDKNGEKEFSVPDDFESIDDIEAFLSKNDYVYKKVYAYIHSNISLALEG NCSPLFNCPFDSGVAGFLFASKANIKEWYGVDRITKKLKDKIFHNWNILINEVTNWANGE VYRVEINGDIYSCYGYSSFEKTLKEYLSNQSLLTSFFLAN >gi|197283046|gb|ABQU01000004.1| GENE 14 9882 - 10010 209 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKRDLNIVKNYKREISLQTKVVRDRTKYTRKQKHKKVNLHY >gi|197283046|gb|ABQU01000004.1| GENE 15 10070 - 10513 532 147 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310333|ref|ZP_04809488.1| ## NR: gi|242310333|ref|ZP_04809488.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 147 1 147 147 270 100.0 2e-71 MATRSLIGFVENGNIVASYCHFDGYLEHNGRILLEFYNDYALAKELVLGGCMSSIDPNIK EVNYYKPYEAPNTFPYAEASKSFKKNYLKKSSEPPYIDIEYIYYHNEEKWLYREVTYTYI SNRISFSEEKILQNNIALDKKTQGILF >gi|197283046|gb|ABQU01000004.1| GENE 16 10523 - 10636 57 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIALIVIVFVCFVSMLFIIKAIEIAFCDFYSSIQKFN >gi|197283046|gb|ABQU01000004.1| GENE 17 10662 - 10952 349 96 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0692 NR:ns ## KEGG: JJD26997_0692 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 1 96 1 96 96 79 46.0 5e-14 MGYRAYTIKKYEIEYGNCLGFNYDYEGCINFLRSFGLETYIDESESFIEVNSQSLIDLNI KELKASDENKVRLMALKRVALESDYAKNGYVRIEWL >gi|197283046|gb|ABQU01000004.1| GENE 18 10972 - 11460 287 162 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0856 NR:ns ## KEGG: JJD26997_0856 # Name: tdk # Def: thymidine kinase (EC:2.7.1.21) # Organism: C.jejuni_doylei # Pathway: Pyrimidine metabolism [PATH:cjd00240]; Metabolic pathways [PATH:cjd01100] # 1 161 2 162 163 142 46.0 5e-33 MELILGSMKSGKSALLLEVANDLSKTKGQNEKLIFIRPSCDNRDFISRGREPDIHLKFGD ERTNLQNYDYIFIDEIQFFDKQYIQYLIGLENKKVLMLAGLNANIHNQTWSNITTLIPYA SAIEFLKANCDICGAKESAIHHIGDDKVGDNYVVVCPKCYKK >gi|197283046|gb|ABQU01000004.1| GENE 19 11463 - 11657 186 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310337|ref|ZP_04809492.1| ## NR: gi|242310337|ref|ZP_04809492.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 64 1 64 64 104 100.0 1e-21 MDNISYELCLYCEYENPLVNGFVAHICKSCGEEILPCSICPVLKNENNCTNCPFEIKGIV GNKE >gi|197283046|gb|ABQU01000004.1| GENE 20 11670 - 11942 211 90 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310338|ref|ZP_04809493.1| ## NR: gi|242310338|ref|ZP_04809493.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 90 1 90 90 150 100.0 2e-35 MKSANNRFAELLLQNNISPKKIKLHKKINAYVAFNEINKVWWKYYKNTDILSLSHYAVDY LGDCYEKSLKEQLYKISTDSYGNIVAVNKI >gi|197283046|gb|ABQU01000004.1| GENE 21 11939 - 12112 149 57 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0859 NR:ns ## KEGG: JJD26997_0859 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 9 57 93 141 141 68 71.0 7e-11 MQPQNDFPKIVDEPTGIVTILERQGRFGAVLVTTYKLGCENLLSDSELRDLKLRGLL >gi|197283046|gb|ABQU01000004.1| GENE 22 12049 - 12369 176 106 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0859 NR:ns ## KEGG: JJD26997_0859 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 10 95 7 93 141 70 50.0 3e-11 MAINIKEILEVSAVKTAKALASKEAKKTKQNEDFVRNLLTRQISAGLKATEHFAERFIQR FTANESESLSSAISRAIRKTQPQENGCNHKTISQKLLMNQQELLLF >gi|197283046|gb|ABQU01000004.1| GENE 23 12526 - 12954 393 142 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310341|ref|ZP_04809496.1| ## NR: gi|242310341|ref|ZP_04809496.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 142 1 142 142 262 100.0 6e-69 MERDYITIAGLRFRLRGAESLPSHKPFKDSDELFSFLVNVVNRHFADFRSYEQTEYGEEP ALQLHYSKAFDFISCLKAELYNGSNPKQHAFKISKNEAKVILKIPYYKAKIEIGFFESKC NGESFKYLSHTEAAKIIKKIKD >gi|197283046|gb|ABQU01000004.1| GENE 24 13120 - 13449 242 109 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKNLAEEIVHFLYNAKLPIEDRNFYQYYYKQNRDFCCNYSEPIKTFIEFLESLGGSTYQI ICYVKLSYSPTFFIYIVDIDEHSKYNISIDSIDSPQSNVTRERFFMMKS >gi|197283046|gb|ABQU01000004.1| GENE 25 13464 - 13685 243 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310342|ref|ZP_04809497.1| ## NR: gi|242310342|ref|ZP_04809497.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 73 1 73 73 137 100.0 2e-31 MVKIIPTKHFLERCEERKLELTLIPQILNEIKNKPNIRTFEVTNGAMSIIAQYDKESSTC ILVTGWAGNRSKK >gi|197283046|gb|ABQU01000004.1| GENE 26 13697 - 14074 413 125 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310343|ref|ZP_04809498.1| ## NR: gi|242310343|ref|ZP_04809498.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 125 1 125 125 211 100.0 1e-53 MNNIYEIKKLYALIIYCDNYLENHYRLRVFNTLNQAKNFCKKTFKTPNGQYEFFEVNKGR FAFYPEEDDYEIESIDRVGQKVMNVFDVREVEIRQETFIINNEGQIAKFDNFSDRESIKN LKEVI >gi|197283046|gb|ABQU01000004.1| GENE 27 14086 - 14952 916 288 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0851 NR:ns ## KEGG: JJD26997_0851 # Name: not_defined # Def: putative prophage LambdaCh01, recombination protein Bet # Organism: C.jejuni_doylei # Pathway: not_defined # 1 288 1 289 292 229 46.0 1e-58 MNTHLTTNNTNKSLSTTSALDLEFIKKQFFPMGATAQDMEYCLKVANIYELNPITREIFF VERNAKINGQWVTKVDPLVSRDGLLSIAHKSGKFGGIKSESFLKETPILVNGQWEVKKDL CAIAQVYRTDTKEVFSSEVYYSEYVQKTKQGEITKFWAEKPNTMLKKVAESQALRKAFNI NGMYIPEEIGVVNSVGGGSENLGDIDIVIADDESIEAEIPESFNNVEVPNNLEMELKAIE ALGLKAIEKNGFLKIEGNTFKKEKQIQTLGFSLHTSADGEKIWVKKIA >gi|197283046|gb|ABQU01000004.1| GENE 28 15100 - 15297 89 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKILLYFIAIYLILSLICGSIIIGIMIKKGYKVPKNLLELAKVFFLSPIIWCKEIISVLL EELKK >gi|197283046|gb|ABQU01000004.1| GENE 29 15507 - 15746 304 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310346|ref|ZP_04809501.1| ## NR: gi|242310346|ref|ZP_04809501.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 79 1 79 79 136 100.0 5e-31 MEAVKITFNADSDFRQMLDEIKRDYGIKSVSEIIRKAVREYKYKLELENWHNAIKIVDND PKLSSILYEDLETGELLVN >gi|197283046|gb|ABQU01000004.1| GENE 30 15777 - 16124 270 115 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310347|ref|ZP_04809502.1| ## NR: gi|242310347|ref|ZP_04809502.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 115 1 115 115 202 100.0 4e-51 MSLKLEKKLVETVYKFWNEQEMESFVIKDSHWDSQLKSDRIYTLSFNANTLIFNYSVGAK DRVNYSCSNLRVDKCGGLLYTLSYLHNKIESTNNTFVFYLSKGKDMEKKINKSMV >gi|197283046|gb|ABQU01000004.1| GENE 31 16133 - 17089 724 318 aa, chain - ## HITS:1 COG:no KEGG:GSU2154 NR:ns ## KEGG: GSU2154 # Name: not_defined # Def: hypothetical protein # Organism: G.sulfurreducens # Pathway: not_defined # 15 315 12 309 324 120 28.0 1e-25 MKIEALKNIWDKAFLDTLSEESVKSLGDRSLYIGSSDIGSCPRRVFLTKTQPNAHSIEQG IVFQRGHLAEKIVKKGLMGLNFKEQFEVQDQSGFLKSHIDFLIENEDSINIVECKSIQSP IENPYDSWILQVQFQLFLLEKCLGDKKPLKAFIFALNVNTGFHKIFEIEKNPLLQNMALE KARILYKALKTGVEPEPEEQYCSSCAYKNSCPLMQKGVSNDIAPAEMLKLGEQVVLLQKE IKPLEVKLKAWKEKLLEEMRTSQIRKIQVGDNFVSALSGTSYVSLDTKTFKETEPDLYTE VFEKYQKTTNKSGSILIK >gi|197283046|gb|ABQU01000004.1| GENE 32 17158 - 17358 84 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310349|ref|ZP_04809504.1| ## NR: gi|242310349|ref|ZP_04809504.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 66 4 69 69 111 98.0 1e-23 MAKYEYKKNPHKFGFEEFKAILDISKKVFDGEICDYKSNQYIASDNGVYVIENFQIIERL NNRYSK >gi|197283046|gb|ABQU01000004.1| GENE 33 17466 - 17741 291 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310350|ref|ZP_04809505.1| ## NR: gi|242310350|ref|ZP_04809505.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 91 12 102 102 158 100.0 1e-37 MNNINKREYDLRQVLFSFKEALKSIEEVKVELPKLEKRLKEILEDSKDMVTLDEFQKKYC KTSRDVPHFTHNVSGFISEFIDCIYYFSDDI >gi|197283046|gb|ABQU01000004.1| GENE 34 17919 - 18017 131 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGTITAIFMALAIFLIPIVGLISIRDIDKDKE >gi|197283046|gb|ABQU01000004.1| GENE 35 18477 - 18878 616 133 aa, chain - ## HITS:1 COG:HP1245 KEGG:ns NR:ns ## COG: HP1245 COG0629 # Protein_GI_number: 15645859 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Helicobacter pylori 26695 # 1 124 1 131 179 145 58.0 2e-35 MFNKVVLVGNLTKDIELRYLPSGTAAARLNLANNRRYKKQDGTQADEVCFIDVNLFNRTA EVANQYLKKGSQVLIEGRLVLESWTDNTGVKRTKHSITAESMQMLGQPQKTQEQDKETQN ASTPLGEGEEIPF >gi|197283046|gb|ABQU01000004.1| GENE 36 19047 - 19415 280 122 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310353|ref|ZP_04809508.1| ## NR: gi|242310353|ref|ZP_04809508.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 122 1 122 122 225 100.0 7e-58 MKKIVRMFKARKAKAMKKPCLIVTLGKGNWVDLHFNPLYKRGVLNFSWHSIWEIPRGIKS KNVEETLADFLYDIMIGDEDEISYLRTIDGVESYAIFPNGKIKGVPFKVLPYSKWEDYRS VI >gi|197283046|gb|ABQU01000004.1| GENE 37 19850 - 20287 546 145 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0847 NR:ns ## KEGG: JJD26997_0847 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 5 132 19 146 151 63 31.0 2e-09 MATDNENTKNNKQNNTQRPSRRQIIEHNQQRKISLIENNISAEVFIPESQSLLRTFRHFR MLDPIDASLRAFWGDKITSKDMEKWLKLVDEIHQKVVEAQEFGMNLLIENGRTRGIENFL LRQEVRRGIEKKEKETKEEVKEKAS >gi|197283046|gb|ABQU01000004.1| GENE 38 20903 - 21958 648 351 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310355|ref|ZP_04809510.1| ## NR: gi|242310355|ref|ZP_04809510.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 351 1 351 351 590 100.0 1e-167 MGTKENQLIENIIPILKNLEKEIPINLEVYGNTLKKIEKTASPINNIKKTKKALFSRYLF GTFYRQEIQSLFLSCVEGDLNVNEIMEYSSQKKEKELEHKIAFNKDENLRKELFFDNDKI ELPEEFSFKKEDFKDNEVEYLIELIIDIYCVLFIKKEKFDLEYFKFIVNRYNIHLRSSNA RIQQKNTSLNYFPTSAENIERDIASFFSFFKEFNVDNPLIKASVTHLFFSIVSPFSQYGL IFARMFFLKVLLEEEEIYKIKYLPILKSLQAQGSKLSKILNSITYSKNSLLLQKNEKKEF KTAVNNWIRSDFNSLVVCSSNLKYTMHNLLVSFGGEKKYVRIKEYQEAIDN >gi|197283046|gb|ABQU01000004.1| GENE 39 22158 - 22472 351 104 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310356|ref|ZP_04809511.1| ## NR: gi|242310356|ref|ZP_04809511.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 104 1 104 104 166 100.0 5e-40 MEEARIVSKIESRILKHFGKDELEIYNTFSRKMRASYAMYIGTTKRKPIMSPKSWESARV FKEDLTSFKEISESLKLDMRAVIKCYRSGIKKIKERLEAEAVLD >gi|197283046|gb|ABQU01000004.1| GENE 40 22573 - 23094 369 173 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310357|ref|ZP_04809512.1| ## NR: gi|242310357|ref|ZP_04809512.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 173 1 173 173 264 100.0 1e-69 MKHNNIRLYLRNGECYFKFKNQSYFVGERKDIDIQRINELLEKELKEQGNVSFSKALDII KRENINKEKGEKMKKETNKVKENLINKNTEDIQEKDNERYLKVKTFNAVDYLPEKYKGKL MFKFKETADILNVHCLTISRWVREGKLQEIVYTERSKFIPLTSILQFLETKSN >gi|197283046|gb|ABQU01000004.1| GENE 41 23689 - 23823 102 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MERETGIEPAAPTLARLCSTTELLPHKSKARIITMLFKKINSLR >gi|197283046|gb|ABQU01000004.1| GENE 42 23880 - 24848 852 322 aa, chain + ## HITS:1 COG:no KEGG:CHAB381_1420 NR:ns ## KEGG: CHAB381_1420 # Name: not_defined # Def: hypothetical protein # Organism: C.hominis_BAA-381 # Pathway: not_defined # 182 306 180 298 309 70 32.0 6e-11 MGIKNIIVSAVLSCGVFVSSPFAQETQDSIYETYQFENGKLYVARDHNGILFGGIYANGY KGCEVGLDKSSLQCGKYHFALEKGKIVGDNAKILDSFAIKSQKIVYRQTQASPSNISMLI VCSKNPKIQNLLELMYQKEFECTNAQQVFLKEAEESMQEYLKDIGDLNVEEYLKKFPLEE ITEDKLYYFDENLLVFEKMSYLYTGGAHGNHGKWGVVLSKKEGIVELNEIIDLNNLELKQ ILWEKYQDIAAKEKVKDYITFENFKVSDAILLSYDGIVFVYQPYEIMPYVYGNIEIKLPL EVVEKFGNFKDSPLKYLFLRQN >gi|197283046|gb|ABQU01000004.1| GENE 43 24904 - 25536 609 210 aa, chain + ## HITS:1 COG:Cj1207c KEGG:ns NR:ns ## COG: Cj1207c COG0526 # Protein_GI_number: 15792531 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Campylobacter jejuni # 3 202 2 182 185 101 31.0 1e-21 MKKLKILFCLLCVGLFFGACEKSIQEAQEDTPKQEYLEDLEIIANNGDKIAINQKIPQSY KNNFKNIEPTQKNTLKDLLITSNKENIKVLFFFTTWCEPCVGILPHLENLQKQFGDKITI FGIGIDDLVGEVEDFNQTMQVFIEENKITFPVAFKENRAEFFKALEGLEGIPLIVLYDEK GDYIIHYLGAIPEEMIEFDLSQNLAKMRAK >gi|197283046|gb|ABQU01000004.1| GENE 44 25536 - 26420 520 294 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157804145|ref|YP_001492694.1| 50S ribosomal protein L32 [Rickettsia canadensis str. McKiel] # 1 289 4 301 303 204 38 4e-52 MFNILKKTLQKTTQNIKELLPKAHKKLTKEELEEVLIATDMDYDLIEMILSPLGEEISKN ELEVALLRLFRGESYYDKVQAKQVNAKPCVDLIVGVNGAGKTTTIAKLANLYQKQGKSVI LGAGDTFRAAAIEQLSLWGERLKIPVISSKQGHDPSAVAFDTITSAAAKNLDCVIIDTAG RLHNQSNLQNELQKIVRICNKAKEGAPHRKILILDGTQGTSSLDQAKIFSQTLGGVDGVI ITKLDGTSKGGAIFSIIHTLRVPILYIGVGEGAEDLIEFDESQYIQTILDSIFE Prediction of potential genes in microbial genomes Time: Tue May 24 01:56:48 2011 Seq name: gi|197283045|gb|ABQU01000005.1| Helicobacter pullorum MIT 98-5489 cont2.5, whole genome shotgun sequence Length of sequence - 1724 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1724 2071 ## gi|242308808|ref|ZP_04807963.1| predicted protein Predicted protein(s) >gi|197283045|gb|ABQU01000005.1| GENE 1 2 - 1724 2071 574 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308808|ref|ZP_04807963.1| ## NR: gi|242308808|ref|ZP_04807963.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 540 1 522 589 399 54.0 1e-109 NKIGTLRTDVLTGYGVGSANPLVAGFVPWLGSGNSIRKASLYYTVDSKLMPALLRDFNGD SRDKVHSFYHQMNGSNIIKDINIYYSTKKKDQYGAEVEDNGYGYVRDGNNSQNDRMFYTA KAVIEGIREYGRDYLKGEIDLSYYKGKNVEVTFDPYNALSNDIGFDSRVKIWHPNITANN YNYTWVTSVKNSNVFGDAHLNTSGDYTTLIDKYLPQIIIDDILEADYAVTIEDENGPLTQ DSLKNIINQLTNIYNVINSKEGEGTTDGKITNFLSQILVDKNNADLKESIKQSINFLRAF YNEGAVVDQNYNKDIFGSSSTHADKMQQYKDKYNNTIKGGITKLKETINGQKTNIANLEQ ALKNLADAVNKAQELNTKGAQLNTDVKNIKIQVAGLDNEIANLEKAIAGLGGMVSQDKLQ AMKAELAAKKQERSKLKTQVANIIAQIEGLKDTDLANLMKEVDGYVATINDIRDGFKKEP LKINQAQEITVMGNGANGANGANGSFTYRGVEAIVKNDITDNIDVPLGIDSIPPKPPVDP TPNPNPNPNPNPNPNPNPNPDNGGGNNGGNNGGG Prediction of potential genes in microbial genomes Time: Tue May 24 01:57:35 2011 Seq name: gi|197283044|gb|ABQU01000006.1| Helicobacter pullorum MIT 98-5489 cont2.6, whole genome shotgun sequence Length of sequence - 88098 bp Number of predicted genes - 78, with homology - 76 Number of transcription units - 30, operones - 20 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 145 78 ## gi|242310438|ref|ZP_04809593.1| filamentous hemagglutinin domain-containing protein + Term 189 - 239 4.1 2 2 Op 1 . - CDS 624 - 923 160 ## JJD26997_0357 plasmid stabilization system protein 3 2 Op 2 . - CDS 917 - 1180 398 ## gi|242310363|ref|ZP_04809518.1| predicted protein - Prom 1226 - 1285 9.9 - Term 1368 - 1407 0.3 4 3 Op 1 . - CDS 1432 - 3084 1418 ## WS1683 hypothetical protein 5 3 Op 2 7/0.000 - CDS 3086 - 3622 586 ## COG0680 Ni,Fe-hydrogenase maturation factor 6 3 Op 3 8/0.000 - CDS 3631 - 4296 654 ## COG1969 Ni,Fe-hydrogenase I cytochrome b subunit 7 3 Op 4 11/0.000 - CDS 4307 - 6043 1792 ## COG0374 Ni,Fe-hydrogenase I large subunit 8 3 Op 5 . - CDS 6044 - 7201 1233 ## COG1740 Ni,Fe-hydrogenase I small subunit - Prom 7304 - 7363 6.6 9 4 Op 1 22/0.000 - CDS 7367 - 8143 660 ## COG1792 Cell shape-determining protein 10 4 Op 2 3/0.000 - CDS 8201 - 9235 1266 ## COG1077 Actin-like ATPase involved in cell morphogenesis 11 4 Op 3 3/0.000 - CDS 9256 - 10497 250 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 12 4 Op 4 25/0.000 - CDS 10494 - 11297 831 ## COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase 13 4 Op 5 . - CDS 11298 - 11765 607 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 14 4 Op 6 . - CDS 11820 - 13199 1554 ## COG0277 FAD/FMN-containing dehydrogenases 15 4 Op 7 . - CDS 13213 - 14034 808 ## WS0266 hypothetical protein - Prom 14218 - 14277 10.2 + Prom 14247 - 14306 11.9 16 5 Op 1 . + CDS 14398 - 14565 232 ## 17 5 Op 2 . + CDS 14578 - 16095 1681 ## COG1495 Disulfide bond formation protein DsbB + Term 16103 - 16146 3.6 + Prom 16170 - 16229 8.5 18 6 Op 1 . + CDS 16278 - 17681 1333 ## COG0215 Cysteinyl-tRNA synthetase 19 6 Op 2 . + CDS 17684 - 18427 383 ## COG2836 Uncharacterized conserved protein + Prom 18454 - 18513 4.2 20 7 Op 1 . + CDS 18548 - 19600 1054 ## WS1773 hypothetical protein 21 7 Op 2 . + CDS 19600 - 20118 500 ## WS1772 hypothetical protein 22 7 Op 3 . + CDS 20115 - 20642 564 ## WS1771 hypothetical protein 23 7 Op 4 . + CDS 20657 - 22513 2232 ## COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase + Prom 22517 - 22576 2.2 24 8 Op 1 5/0.000 + CDS 22623 - 24308 1978 ## COG1401 GTPase subunit of restriction endonuclease 25 8 Op 2 . + CDS 24325 - 25983 789 ## COG4268 McrBC 5-methylcytosine restriction system component + Prom 26177 - 26236 7.3 26 9 Op 1 30/0.000 + CDS 26260 - 26688 590 ## COG0811 Biopolymer transport proteins 27 9 Op 2 11/0.000 + CDS 26681 - 27064 473 ## COG0848 Biopolymer transport protein 28 9 Op 3 . + CDS 27030 - 27749 717 ## COG0810 Periplasmic protein TonB, links inner and outer membranes 29 10 Op 1 . - CDS 27758 - 28657 687 ## COG1663 Tetraacyldisaccharide-1-P 4'-kinase 30 10 Op 2 . - CDS 28660 - 29790 943 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 31 10 Op 3 . - CDS 29791 - 30558 519 ## COG0171 NAD synthase - Prom 30592 - 30651 5.3 32 11 Tu 1 . - CDS 30667 - 31833 942 ## COG2814 Arabinose efflux permease - Prom 31928 - 31987 9.0 + Prom 31934 - 31993 8.3 33 12 Op 1 . + CDS 32018 - 32734 1093 ## WS2123 hypothetical protein 34 12 Op 2 . + CDS 32740 - 34014 1260 ## COG0826 Collagenase and related proteases 35 13 Op 1 . - CDS 34011 - 34172 152 ## gi|242310395|ref|ZP_04809550.1| predicted protein 36 13 Op 2 . - CDS 34185 - 35537 1394 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 35563 - 35622 6.7 - Term 35697 - 35732 1.0 37 14 Op 1 3/0.000 - CDS 35736 - 37349 1215 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 38 14 Op 2 3/0.000 - CDS 37358 - 37651 424 ## COG0762 Predicted integral membrane protein 39 14 Op 3 . - CDS 37654 - 38976 1221 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases - Prom 39004 - 39063 8.8 + Prom 39027 - 39086 9.8 40 15 Tu 1 . + CDS 39109 - 39855 622 ## COG0253 Diaminopimelate epimerase + Term 39933 - 39984 -0.7 41 16 Op 1 . - CDS 39842 - 40048 283 ## gi|242310401|ref|ZP_04809556.1| predicted protein 42 16 Op 2 . - CDS 40048 - 41280 1460 ## COG0281 Malic enzyme - Prom 41310 - 41369 5.4 43 16 Op 3 . - CDS 41377 - 43317 1439 ## WS0172 hypothetical protein - Prom 43391 - 43450 5.8 44 17 Tu 1 . + CDS 43441 - 46224 2881 ## COG0060 Isoleucyl-tRNA synthetase + Term 46464 - 46532 30.4 + TRNA 46446 - 46521 86.5 # Phe GAA 0 0 + Prom 46814 - 46873 8.3 45 18 Op 1 . + CDS 47038 - 49014 1912 ## COG0556 Helicase subunit of the DNA excision repair complex 46 18 Op 2 . + CDS 49068 - 50663 170 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 47 18 Op 3 . + CDS 50672 - 53644 1982 ## COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain 48 18 Op 4 . + CDS 53648 - 53887 410 ## gi|242310409|ref|ZP_04809564.1| predicted protein 49 18 Op 5 . + CDS 53877 - 54596 585 ## DMR_p1_00640 hypothetical protein 50 18 Op 6 . + CDS 54593 - 55396 363 ## COG2746 Aminoglycoside N3'-acetyltransferase + Term 55398 - 55443 3.5 - Term 55390 - 55428 6.4 51 19 Tu 1 . - CDS 55440 - 55937 635 ## WS0892 hypothetical protein - Prom 55974 - 56033 9.4 + Prom 56037 - 56096 9.7 52 20 Op 1 3/0.000 + CDS 56319 - 57578 1480 ## COG0151 Phosphoribosylamine-glycine ligase 53 20 Op 2 3/0.000 + CDS 57578 - 58036 367 ## COG1714 Predicted membrane protein/domain 54 20 Op 3 2/0.000 + CDS 58046 - 60178 2424 ## COG1452 Organic solvent tolerance protein OstA 55 20 Op 4 2/0.000 + CDS 60187 - 60873 570 ## COG1926 Predicted phosphoribosyltransferases 56 20 Op 5 . + CDS 60888 - 63032 182 ## PROTEIN SUPPORTED gi|222151374|ref|YP_002560530.1| 30S ribosomal protein S1 + Term 63069 - 63102 -0.9 57 21 Op 1 . - CDS 63044 - 63298 366 ## WS1260 hypothetical protein 58 21 Op 2 . - CDS 63309 - 63740 337 ## COG0824 Predicted thioesterase - Prom 63762 - 63821 5.7 - TRNA 63839 - 63923 77.2 # Leu TAG 0 0 59 22 Tu 1 . - CDS 63983 - 65038 692 ## COG2957 Peptidylarginine deiminase and related enzymes - Prom 65065 - 65124 9.0 + Prom 65020 - 65079 6.6 60 23 Op 1 . + CDS 65103 - 65720 802 ## WS1599 hypothetical protein 61 23 Op 2 . + CDS 65723 - 66724 542 ## PROTEIN SUPPORTED gi|229879751|ref|ZP_04499249.1| (SSU ribosomal protein S18P)-alanine acetyltransferase + Term 66765 - 66812 -0.9 62 24 Tu 1 . - CDS 66900 - 68207 1412 ## COG0124 Histidyl-tRNA synthetase - Prom 68280 - 68339 16.4 + Prom 68266 - 68325 13.9 63 25 Op 1 3/0.000 + CDS 68348 - 68551 358 ## PROTEIN SUPPORTED gi|224418082|ref|ZP_03656088.1| 50S ribosomal protein L31 64 25 Op 2 3/0.000 + CDS 68560 - 69375 626 ## COG0313 Predicted methyltransferases 65 25 Op 3 . + CDS 69402 - 70088 224 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 66 25 Op 4 . + CDS 70075 - 70977 921 ## WS0447 hypothetical protein 67 25 Op 5 . + CDS 70971 - 71801 816 ## WS0448 hypothetical protein 68 25 Op 6 . + CDS 71820 - 73031 1167 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 69 25 Op 7 . + CDS 73037 - 75442 2025 ## COG2217 Cation transport ATPase + Prom 75563 - 75622 8.5 70 26 Tu 1 . + CDS 75667 - 75771 106 ## + Term 75954 - 76005 -0.1 + Prom 76105 - 76164 6.6 71 27 Op 1 2/0.000 + CDS 76197 - 77003 744 ## COG0413 Ketopantoate hydroxymethyltransferase 72 27 Op 2 . + CDS 77019 - 78020 1272 ## COG2255 Holliday junction resolvasome, helicase subunit + Term 78243 - 78274 -1.0 73 28 Tu 1 . - CDS 78047 - 80671 3474 ## COG1344 Flagellin and related hook-associated proteins - Prom 80711 - 80770 3.9 + Prom 80737 - 80796 9.5 74 29 Op 1 3/0.000 + CDS 80828 - 82579 2000 ## COG0173 Aspartyl-tRNA synthetase 75 29 Op 2 . + CDS 82588 - 83160 657 ## COG0563 Adenylate kinase and related kinases 76 29 Op 3 . + CDS 83169 - 83606 421 ## CFF8240_0156 hypothetical protein 77 29 Op 4 . + CDS 83620 - 84138 671 ## COG0221 Inorganic pyrophosphatase + Term 84145 - 84178 2.9 + Prom 84194 - 84253 10.6 78 30 Tu 1 . + CDS 84326 - 88030 4012 ## COG3210 Large exoproteins involved in heme utilization or adhesion Predicted protein(s) >gi|197283044|gb|ABQU01000006.1| GENE 1 2 - 145 78 47 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310438|ref|ZP_04809593.1| ## NR: gi|242310438|ref|ZP_04809593.1| filamentous hemagglutinin domain-containing protein [Helicobacter pullorum MIT 98-5489] # 4 47 930 973 973 65 63.0 1e-09 LNYKREVLELPAEEETSIEINEGREKGRLCIVSDNAKTNNPCIAITY >gi|197283044|gb|ABQU01000006.1| GENE 2 624 - 923 160 99 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0357 NR:ns ## KEGG: JJD26997_0357 # Name: not_defined # Def: plasmid stabilization system protein # Organism: C.jejuni_doylei # Pathway: not_defined # 1 89 1 91 93 71 49.0 9e-12 MVIRYSDEFLNDLKNIADYISLDSKDRAFAFIQQVKTQIHKIPIMPYRYRKNKTINKENI RDLIFKGYIIPFSINDDSIEILAIFKHNLTIYSKKTNKD >gi|197283044|gb|ABQU01000006.1| GENE 3 917 - 1180 398 87 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310363|ref|ZP_04809518.1| ## NR: gi|242310363|ref|ZP_04809518.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 87 4 90 90 124 100.0 2e-27 MTNAIMLQAQNSFTLTDEMMNSLKELFGEKINVVELDNDMIEALQSDLSQTDNIRLKNIV NKLENKELKLYSELEFAKELKQKGYQW >gi|197283044|gb|ABQU01000006.1| GENE 4 1432 - 3084 1418 550 aa, chain - ## HITS:1 COG:no KEGG:WS1683 NR:ns ## KEGG: WS1683 # Name: hydE # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 54 534 47 530 546 204 32.0 9e-51 MFVALDFSLIHNLQSPNTIKNFFLKNLFWSAKSFLLEAQAIQNNTKNFTLELQGEQQKLL DFTNHLSQSLPLSLQWAFKELRILENLSQNNKISPNNEISNFLTPIELQEITHKQSPNFC NLWQNFIDFKLEKITLLKDNQKLPLKHAKDLQESLSFLSQLLKEGKSIFIKTIFGKKELL LLDEKNPTKINTPYLFMPFCLNNAQSIFRISNEESQALATLEKPIIHLKPKAILKDFFCL DEVPCILPFDPILLLLTKFLESYSGLYLLEPREKIQNGICYFIKEEKSPLTITVAKNSLI LQHTAQKAPNTPHPELESFLQTIQEENLKSLNALYLGEDSTHFMVYFNGSFKTPIEFKFE TNFHLILNTLKTLNSTTQSLLKNFTNANCELIKQLETLPTDSKPSTNLLDLIGMCGILLD LQANTLKDSTKAVLQCASQFLGSKGPRIDFRLEKNEEGKIYLDTLRTLRSVMSFKLAGVE KELLCFGILDSFAEFFANLSRDMEENYNTKGIIVSGEIFLNKQFIDQFIHYLPKDSDIFP NSIMFFTPFH >gi|197283044|gb|ABQU01000006.1| GENE 5 3086 - 3622 586 178 aa, chain - ## HITS:1 COG:jhp0577 KEGG:ns NR:ns ## COG: jhp0577 COG0680 # Protein_GI_number: 15611644 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase maturation factor # Organism: Helicobacter pylori J99 # 2 178 4 178 178 206 59.0 2e-53 MKILILGIGNILFGDEGIGVHLSNLLKLNYSFEGEHEVDIVDGGTMAQHLIPIITNYDRV LILDCIDADNAQIGDIYFFDFSAIPNNITWAGSAHEVEMLQTLKMIEMLGDLPPTKILGV KPFIIGSDPTFELSQEILKAAKTMEAQAIKYLHEFGIQTHKKDNRDLQEIAHLSYKGF >gi|197283044|gb|ABQU01000006.1| GENE 6 3631 - 4296 654 221 aa, chain - ## HITS:1 COG:HP0633 KEGG:ns NR:ns ## COG: HP0633 COG1969 # Protein_GI_number: 15645257 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I cytochrome b subunit # Organism: Helicobacter pylori 26695 # 10 218 12 224 224 202 50.0 3e-52 METKYKPVYEFSGLTRIFHWIRAFAIFALIATGFYLAYPFLSANPQYDVYSLSRIWHVII GFALIAVSIFRIYLFIFAKECQMERRSFLDFINPIIWIKILKTYLLLGGHPHNKGAYNPL QLATYIGLMLLIIAISLTGLILYAHVYHEGLGGFIMSFTRPLEVLFGGIANVRLVHHILT WAFIIFIPIHIYMASWNAVKFPGSGIDTIISGLKFEKDEQH >gi|197283044|gb|ABQU01000006.1| GENE 7 4307 - 6043 1792 578 aa, chain - ## HITS:1 COG:HP0632 KEGG:ns NR:ns ## COG: HP0632 COG0374 # Protein_GI_number: 15645256 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I large subunit # Organism: Helicobacter pylori 26695 # 1 571 1 573 578 855 68.0 0 MTKRIIVDPITRIEGHLRIEVIVDENNVITDAYSSSTLWRGIEVIVKNRDPRDVGFMVQR ICGVCTYSHYKAGITAVEDALGIKVPFNAQMVRSLMNVSLVLHDHLVHFYHLHGLDWCDI TQALKADPKKASELAFKYVKNPIATGADELKAVQEKVAKFASSKQGLGPFANAYWGHKTY RFSPEQNLIVLSHYLKALEVQRVAAEMMAIFGAKQPHPQSLTVGGVTCVADILDPSRLGD WLTKYKEVSDFINRAYYADVVMAAEVYKNEPSVLKGCGVKNFMSYAEIPVNHNETLYSSG IVRNGDISKLFEINEDLITEEATHSWYQNDKALHPYEGDTTPNYTGFVDADTIGPDGTPI KTKALNLEGKYSWIKSPRYNGEPMEVGPLAAIVVGLAAKNPRITKIATQFLKDTGLPIEA LFTTLGRTAARLLECKLSADYGIEAFNSLVENLKTGDQTTCAPYKIDSNKEYKGRYIGNV PRGMLSHWVRIKDGVVSNYQAVVPSTWNAGPKDSKNQMGPYEASLVGTKIQDLTQPLEII RTIHSFDPCIACAVHLMDTKGNEIGQYKIDPIAIGCNI >gi|197283044|gb|ABQU01000006.1| GENE 8 6044 - 7201 1233 385 aa, chain - ## HITS:1 COG:Cj1267c KEGG:ns NR:ns ## COG: Cj1267c COG1740 # Protein_GI_number: 15792591 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I small subunit # Organism: Campylobacter jejuni # 9 383 5 379 379 595 71.0 1e-170 MEREQVLLQKAQERLKEINKFPALKKGNSIKKMLKENGISRRDFMKWAGAMTAMLSLPAS FTPLTAKAAEVADRLPVIWLHLAECTGCSESLLRSDGPGIASLIFDYISLEYHETIMAAS GFQAEQNLEDAIEKYKGRYVLMVEGGVPTALEGQYLTIGAHGKTGLENAKEASEHAAAIF AIGTCSSFGGIQAANPNPTAAKPLSAVTNKPVINVPGCPPSEKNIVGNVIHFILFGTLPS LDAFNRPKWAYGLRIHDLCERRGHFDAGEFVQTFGDEGAKNGYCLYKVGCKGPYTFNNCS KLRFNSHTSWPIQAGHGCIGCSEPNFWDTMGPFEEPLGNKIYDVPFFSGKDRTADNIGIT LLGVAAIGMAAHAILSGVRKNNKGE >gi|197283044|gb|ABQU01000006.1| GENE 9 7367 - 8143 660 258 aa, chain - ## HITS:1 COG:Cj0277 KEGG:ns NR:ns ## COG: Cj0277 COG1792 # Protein_GI_number: 15791648 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Campylobacter jejuni # 7 222 25 232 249 121 37.0 1e-27 MQVSKEIHTKVLFVSDSIKIGILNLNNNIINAITRHFNQAEQIKHLTNELKNKESIQYSF DFLTNQHNELLHSIHSNLDLNLPNFHLVRTISYVNINDYTKIWLEVDHQETITKTKNVIF GLIHNNQVAGIATLSNGRFIGFLNGDEKCSYSVIVGPNKSPGIAKYDPNKGFIIDYIPLY PKIQVGDNIYTSGYDEIFYPNILVGQVESIEERQNYQIATIKLASNQTSQFYWLVDIDNQ ERSFLQNNSNLQQNSNQK >gi|197283044|gb|ABQU01000006.1| GENE 10 8201 - 9235 1266 344 aa, chain - ## HITS:1 COG:Cj0276 KEGG:ns NR:ns ## COG: Cj0276 COG1077 # Protein_GI_number: 15791647 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Campylobacter jejuni # 1 344 1 345 346 494 78.0 1e-139 MLLDRIIGWFSHDISIDLGTANTIVIVKGQGVIINEPSVVAVRNDKYGKNKILAVGHEAK EMVGKTPGSILAVRPMKDGVIADFDMTEKMIRHFIEKAHRRKALMRPRIIVCVPYGLTGV ERKAVRESAISAGAREVFLIEEPMAAAIGAGLPVKEPKGSLVVDIGGGTTEIGVISLGGL VISKSLRTAGDKLDNAIVDYIRRKYSLLIGERTGEIIKIQIGSAISLDEPLSMQVKGRDQ VSGLLNTIELTSEDVREAIKEPLKEISNALKDVLEQMPPDLAGDIVENGIVLTGGGALIR GLDKYLSEIVKLPVYVGEEPLLCVAKGTGKALEEIDILQQLSYE >gi|197283044|gb|ABQU01000006.1| GENE 11 9256 - 10497 250 413 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 169 397 267 451 466 100 32 2e-20 MSERICNFCKSKESPKNPLITGNNVCICKNCIIASYSLLFGNEPHLPEEIDSQPEEDFKI MPPKELKAILDEYVIGQEKAKKVFSVAVYNHYKRILQNPQEEDTEISKSNILLIGPTGSG KTLMAQTLAKSLNIPIAICDATSLTEAGYVGEDVENILTRLLQEANGNVQRAEKGIVFID EIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQINTKDIL FICGGAFDGLEEIIERRIGGNTLGFHHQKNTKVNSHNLLEKVEPDDLVSFGLIPELIGRL HMIATLEKITKEAMVNILQKPKNALTKQYKQLFALDGVVLTFQPEALEAIAELAIQRKTG ARGLRSIMEEIMLDIMYELPELKGYEVIITKETVSKKEKPLLIKQKKNGKKSA >gi|197283044|gb|ABQU01000006.1| GENE 12 10494 - 11297 831 267 aa, chain - ## HITS:1 COG:jhp1289 KEGG:ns NR:ns ## COG: jhp1289 COG1043 # Protein_GI_number: 15612354 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase # Organism: Helicobacter pylori J99 # 3 262 4 257 270 308 58.0 6e-84 MSIAKSAIIAPSAIVEEGATIGENVEIGHYCVIGKNVKIGDNTKIYNHVTILGNTILGKN NEIYPNATLGTNPQDLKYHGEPNELIFGDNNKIREFTMINPGTEGGGSKTIIGNNNLLMA YVHVAHDCIIGNNCILANGATLGGHIIMGDYINIGGLTPIHQFVKIGDYAMIAGASALSQ DIPPFCMAEGNRAVIRGLNLHRLRKNFEHHQVDKIHNAYKRLFLGNRPIREIAQEILDET PTDENVMKMCNFILQSTRGIPFIRKSL >gi|197283044|gb|ABQU01000006.1| GENE 13 11298 - 11765 607 155 aa, chain - ## HITS:1 COG:jhp1290 KEGG:ns NR:ns ## COG: jhp1290 COG0764 # Protein_GI_number: 15612355 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Helicobacter pylori J99 # 5 149 14 158 159 186 63.0 1e-47 MIYDVQKIREILPHRYPLLLVDRITAITPNQSIEAYKNITINEEIFNGHFPIQPIYPGVY IIEGMAQAGGVLAFISMFGEDSSNNGDKIVYFMSIDKAKFRNPVTPGDTLVYKLEVVKQK GGIWVLQGYAYVNEKLVAEAELKAMIVDKTKEKGN >gi|197283044|gb|ABQU01000006.1| GENE 14 11820 - 13199 1554 459 aa, chain - ## HITS:1 COG:Cj1213c KEGG:ns NR:ns ## COG: Cj1213c COG0277 # Protein_GI_number: 15792537 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Campylobacter jejuni # 1 459 1 460 460 649 69.0 0 MTEQNIQDLRKIVGSEDCYDDKAHLSAYCYDATKERKYPECVVFPHNEQEVSQILKYCNT HKIPIVPRGAGSGFTGGALAVNGGVVLALEKHMNKILEIDMENMVARVQPGVVNMQLQKA VEAVGLFYPPDPASEHYSTLGGNVSENAGGMRAAKYGITKDFVMALRAVLPNGDIIRAGK KTIKDVAGYNIAGILIASEGTLAVITEITLKLLSKPKYKQSAMGVFPSIQSAMNAVYKTM ASGITPVAMEFLDNLSIRAVEEKFHKGLPIQAGAILITEVDGNLPEEIDFQMSKIKEKFY ENGASDFIQANNEQEAANLWFARKNASPSITIYGSKKLNEDITVPRSKLPELLERIQEVS KKYSVVIPCFGHTGDGNVHTNVMVDGSKPEEVEKGHKAIEEIFKITVELGGTLSGEHGIG LSKAPFMELAFTQEEMELFRTIKKAFDPNNILNPGKMAL >gi|197283044|gb|ABQU01000006.1| GENE 15 13213 - 14034 808 273 aa, chain - ## HITS:1 COG:no KEGG:WS0266 NR:ns ## KEGG: WS0266 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 13 273 9 271 271 363 63.0 3e-99 MKYLKLKLFICILFFSSIAFASPFGNKLIVPIIELDTDSEHFAYVPAFDLKVGESGEIIR WFDKEHSGIVAMAAVVEVKDNRAKIAFEPFVGLEQSAFPTPLLKPQKNDEVVFRSFNDRA FLIAPTQDIYEKVRNAYPDVTWLHPDLFAAYLMDIGHTAPVKGDFRKICAQYATGVVYIV NLNEGQALDCQTFSLIKKDYITGRAPIEERMLPFFSRIGSTNQEWFSYLINDKRTQDYYI YFDALLKGEIKDEDATFFGRITNYFTQSIKDIF >gi|197283044|gb|ABQU01000006.1| GENE 16 14398 - 14565 232 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEFLELLMVLIAMILIIKKPEKEKLAFNLVMISWVIMIVLYVSHKAGGILTNMNL >gi|197283044|gb|ABQU01000006.1| GENE 17 14578 - 16095 1681 505 aa, chain + ## HITS:1 COG:Cj0017c_1 KEGG:ns NR:ns ## COG: Cj0017c_1 COG1495 # Protein_GI_number: 15791416 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond formation protein DsbB # Organism: Campylobacter jejuni # 1 132 1 132 132 247 87.0 5e-65 MNENAKVKNFYTLMCLAGLLIVLLPVGIANVVFGYMLGDSPCTLCWGQREAMIYIGVMAL FIVRYGMKGKYIAAILIMAAFGLYQSFAQYGMHAMRDLDQGFGLAVFGLHTYFWAEVVFW AVVLLLGVIFAFAPKFGEFDVEMAGKKFREWTKLSFASVVIVTLIIASNVFQAFVSTGIP PYAGQGDPVRFSLNPKYIIWSTDYWNGKFSSFSFLGPRDVKAPDYAFAPASSKLGITFDN DSANAPLNVDKTLKITGEQKIDFAQPINTLSYIRGEYLVSSKYDVAVMDDNFAVKSSFKL DPYFSATIDPIIGIIPYMEDKYLLMGSNKSFLRFKQNPNADDAKQYADFIEGADKFEGQG EGLGRGRLDTVRSKFFHVASMATDGKYFYLATTPNNKNAKTFVISKYLLSDRTLSGEFTP QAELKDGKTLGDLYVTSMVYHNGELYALSKNHNVIVVIDPKSEKVTQTISYPETIKNARS LLIDEAGNMKIQSYQDGANILYTLQ >gi|197283044|gb|ABQU01000006.1| GENE 18 16278 - 17681 1333 467 aa, chain + ## HITS:1 COG:jhp0818 KEGG:ns NR:ns ## COG: jhp0818 COG0215 # Protein_GI_number: 15611885 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Helicobacter pylori J99 # 5 467 3 464 465 523 57.0 1e-148 MQLKIYDSVQKEKVDFIPINPPEVRLYVCGPTVYDDSHLGHARSAIVFDLLRRVLRENGY KVYFAKNFTDIDDKIINKSLQTGLSITEITKTYIQKYLDEMEALGVERADIEPKATESLE SICEMIQELLDKGFAYQTPNGDIYLSVAKDSKYGSLSGRVAELELQSRIHNSEQKRDSKD FALWKSYKGIGDIGYESPFGKGRPGWHIECSAMIKKHLAYSGQYAIDIHGGGADLLFPHH ENEASQTRCAENQTIAKYWIHNGFVTINGEKMAKSLGNSFFIKDALKNYDGEILRFYLLG THYRAGLNFAEEDLLSAKKRLDRIYRIKKRIYPIQEADESQCNEFKEAILEALNDDLNIS KALSVVDEFINKANEFLDKKQKDKISSIAGFLAILERLLGVGGKNPFEYFQLGVSEEQKQ EIENLIAQRTEAKKQKDFAKADEIRERLHSMGIEIMDLPTKSVWEKV >gi|197283044|gb|ABQU01000006.1| GENE 19 17684 - 18427 383 247 aa, chain + ## HITS:1 COG:HP0861 KEGG:ns NR:ns ## COG: HP0861 COG2836 # Protein_GI_number: 15645480 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Helicobacter pylori 26695 # 1 243 4 235 246 96 35.0 5e-20 MDKISFISIFGIALVGGFGHCIGMCGGIVLAYCGKLGASFQNNKIHLLFYHLLYNLGRIS TYIVLGVIVGILGSMFVMDGFLRGCLFVFAGIAMVLAGLSLFGKIKFLAYLEHSLQNTQW YQKSFRKFLDIKNPWSLYLLGVLNGLLPCGFVYAFLFAAAGFANPLIGGAVMAVFGLGTI PALVLVALLANTLFSKQLFRKIAMNLAALAIIVFGVLMIQKGIKFLQNPEMGGKMHMQIS IEQGKQN >gi|197283044|gb|ABQU01000006.1| GENE 20 18548 - 19600 1054 350 aa, chain + ## HITS:1 COG:no KEGG:WS1773 NR:ns ## KEGG: WS1773 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 337 1 337 351 187 33.0 6e-46 MNLSKTIRHFFSTIIIGVEIDHKNCKIVAQFYKGNKKFQTQTKIFKTIPGELSAQAVRYI KKIRTKNPFTYIATQSSSIVQGAISTSNKEEFAKYGININEVVSKSFYNNWSVYIAKDGI AETQKRFLKTGVDFIVSPFLVLYSLAKRIPQEDCRLYILFQRSNMTMIVKKQNEEVLFGG YYVLESEIDSELKIVKNTLSEDEDEIQKINIQDNIQDELNEIEEVDVANEHSDNELIEIL KSENEEIGDEAKEENLEDSSDEDLDDFSRVSMASKFIQSAINEFYNNEIYESEFIREIVI FNPCDIQEETLKQIQNFTMLEVQITPCNVAEILAELGFESYCFFETKGEV >gi|197283044|gb|ABQU01000006.1| GENE 21 19600 - 20118 500 172 aa, chain + ## HITS:1 COG:no KEGG:WS1772 NR:ns ## KEGG: WS1772 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 168 11 178 179 147 47.0 2e-34 MNYSFISPSKKTLLKKVSRIWWGYIFLTLFIFVGFVVMLKIQGYFMQNGAIQAINEQKAT LEEIKSIQQFLVKEEEIVHFGEFIAKQNLMLKDSIINLFEMIPEQITLNKIQMEQYQLTL YGTTPSKQIYTFLLEVPLRSIFNQSRADFYLLSNGWYNFVSVSKLNQEEKTQ >gi|197283044|gb|ABQU01000006.1| GENE 22 20115 - 20642 564 175 aa, chain + ## HITS:1 COG:no KEGG:WS1771 NR:ns ## KEGG: WS1771 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 7 170 10 173 183 79 28.0 5e-14 MKAFFAQIDWVRNTFFFVFYFFLVAGVFVGFVKPQLDVFRNTNANYRKELFTLEQIQKQR DLEKQSLAEYQKNNAEILEGFKYQITQQEIEEKLRIIFDTAGIVADGEPILEGDYWKQRY VISGKVKDIQALKKALEIAQNFKAIMRLNFPIHIEKEGKMLVFSFRLDVYYLNKI >gi|197283044|gb|ABQU01000006.1| GENE 23 20657 - 22513 2232 618 aa, chain + ## HITS:1 COG:Cj0013 KEGG:ns NR:ns ## COG: Cj0013 COG0129 # Protein_GI_number: 15791412 # Func_class: E Amino acid transport and metabolism; G Carbohydrate transport and metabolism # Function: Dihydroxyacid dehydratase/phosphogluconate dehydratase # Organism: Campylobacter jejuni # 1 617 1 558 558 753 65.0 0 MRSDVIKKGYQRAPHRSLLRATGLKDSDFNKPFIGVANSYIDIIPGHFYLNKYAEIIKDE IRKAGGVPFEFNTIGVDDGIAMGHNGMLYSLPSRELIADCIETVMNAHSLDAMICIPNCD KIVPGMLMGALRVNVPTIFVSGGPMKAGKLDDGSVLDLNSAFEAVGAYESGKIDEKRLHE IECNACPGGGSCSGMFTANSMNTLCEAMGVALPGNGTIPALSKEREELLRAAARRIVEIA LDSEASERFRFRNILNHKAVHNAFVVDMAMGGSTNTVLHMLAIAKEAGVDFDLESINAIA AKVAHIAKIAPALSSVHMEDINRAGGVSAVMNEVAKRNSSLGMQCDKIVDFVRGTDAKSA NLPQNPQNLHSHTTNTRICGESVSESILYLDALTITGETLGERVAGAKITDTNIIHTNEN AYSQVGGLKILFGNLALEGAVLKVAAVAESMKEFRGKAICFNSQAEAIKGIAGGKVKSGN VVVIRYEGPKGGPGMQEMLSPTSLIMGMGLGESVALITDGRFSGATRGACIGHVSPEAAE GGLIALIEDGDEIEISVSKGSLELCVDSKILESRRAKWLEQGVAQKIMQDKNITSKWLKR YSLLVSNAANGAVLKTEL >gi|197283044|gb|ABQU01000006.1| GENE 24 22623 - 24308 1978 561 aa, chain + ## HITS:1 COG:Cj0139 KEGG:ns NR:ns ## COG: Cj0139 COG1401 # Protein_GI_number: 15791527 # Func_class: V Defense mechanisms # Function: GTPase subunit of restriction endonuclease # Organism: Campylobacter jejuni # 328 528 557 752 783 228 64.0 2e-59 MSDREIFKEFQEKWPLERVRKMSLEKYTGIGGSNRNDFTYQLERLAKNFGGIGGGSSFVF GIYKSINNENKEDGQHIYKDGYAWLRKYGNTKEEVFNNIKANIVKIIEASQKNELEKIDD INFGHTIKWAIAFFYQNPDDMKIVNIFNNKVLEMIAEGELGNAKLKASEIYKKILKDKTY TLEEMMQELSKPLWEEYGKGTSKVETNTPQGDAMLNKPNNQRNIPLNQILYGPPGTGKTY ATINKALEILKSYDEITEIPEGRQEQKEIFDTFVAKGQIEFVTFHQSYGYEEFVEGIKPS VKNGTVIYETKNGVFKNLCKKALEGKDKPYILIIDEINRGNIAKILGELITLIEPSKRIG KSEGLQLTLPYSGESFGVPRNLYIVGTMNTADRSIALLDTALRRRFEFVEMMPDSEYLKD KKISDSGNTIELDRLLESMNNRIEFLLDREHTVGHSYFMGVESIEDLRKVFKNKIIPLLQ EYFYDDYAKIIAVLNDNGMIKEKNKSQFSDLFDGKFSELDSEKVVYEIIESSKWLAWQFE KIYNNATQVPKDSQNTESNQD >gi|197283044|gb|ABQU01000006.1| GENE 25 24325 - 25983 789 552 aa, chain + ## HITS:1 COG:Cj0140 KEGG:ns NR:ns ## COG: Cj0140 COG4268 # Protein_GI_number: 15791528 # Func_class: V Defense mechanisms # Function: McrBC 5-methylcytosine restriction system component # Organism: Campylobacter jejuni # 9 550 7 443 443 265 37.0 2e-70 MPSLPTLHIAEYESFTQDDIKICLDKFCRSKNKSLNFIESKAQKIFAELQEFVKQKNNGS FLRFWGSNTLKAQNYVGLIQTKSGFCVEILPKTFDKDFGGDNLCDYHKGNTNKAPKIKFG KQKFATKVEECLKHITSNPKAIAENKESKNQNAQQDKPQCSICQSKQILLNCLVTLKDSP FKQSHIASLQSLNLPLLEVFIQMFLAELERLIHRGLKSDYREIAQNRVFLKGKLLFNEQI KHNLIHKERFFTQSDEYSLNSAPNRLIKCTLEFLRTLSLSPKTRTKLDSLYFIFEEITPS SHIDRDFAKCKSMRRFKEYELVLLWCAIFLQQKSFSAYSGSERAFALLFPMERLFESFVG HWLGRSIEHHEIKLQEQRYYFMQDFQKVDIFQLKPDVIMRSESEILILDTKWKIPDSTND EKRYGIAQSDVYQMWAYASKYALESTLQNTKSKLDSKGIKSQKATEITELESSTDYKKIE ANKPKQLKVWLIYPLCERTKALQEKWQKPTRGQPRQWYFKASIPHNKSHKTYEENQENGA ISLFIAFFPLTD >gi|197283044|gb|ABQU01000006.1| GENE 26 26260 - 26688 590 142 aa, chain + ## HITS:1 COG:Cj1628 KEGG:ns NR:ns ## COG: Cj1628 COG0811 # Protein_GI_number: 15792933 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Campylobacter jejuni # 1 140 1 140 141 179 68.0 2e-45 MEILKETIDYAIFGILGIMGFIALWLTIERVIFFSKVKLSDYPTQESFDDSITKNLTTLY IIYSNAPYVGLLGTVIGIMITFYDMGLSGNIDTKEIMTGLSLALKATALGLAVAIPTLIA YNALYRKITLLSNLYKTRQNND >gi|197283044|gb|ABQU01000006.1| GENE 27 26681 - 27064 473 127 aa, chain + ## HITS:1 COG:Cj1629 KEGG:ns NR:ns ## COG: Cj1629 COG0848 # Protein_GI_number: 15792934 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport protein # Organism: Campylobacter jejuni # 1 126 1 127 129 124 59.0 5e-29 MIKIPKNESLNIVPFIDIMLVLLAIVLSVSTFIAQGKIQIELPQSANQEQQKDEKKVKVL INKENQIYLDDSLVGLEELKVKLESLEAKTMVELHSDKDAKFETFIQIVDILKGKGHENF SIATQQQ >gi|197283044|gb|ABQU01000006.1| GENE 28 27030 - 27749 717 239 aa, chain + ## HITS:1 COG:Cj0753c KEGG:ns NR:ns ## COG: Cj0753c COG0810 # Protein_GI_number: 15792093 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein TonB, links inner and outer membranes # Organism: Campylobacter jejuni # 1 239 1 227 227 85 31.0 7e-17 MKTSVLQHNNNNSTLHSFLIASGIYAILFFGIFYSTKNFLPKDVGLQTRAIAISLSHFSP STKEPLPTPKEEVTPKPTPIEKPKPIQKPLPKPKPIAKPIKQVESVQPTPIKPTKNVENT KEMATEAKNALATPKQMGNVPETLTFGKVNDPFLISVKQAIDKNLEYPRKARMLRMTGIV MVEFTLLKEGGLENVRIIESSQHQLLDKSAIKTIMRATNDFPIPKNNVIIQIPIQYLLT >gi|197283044|gb|ABQU01000006.1| GENE 29 27758 - 28657 687 299 aa, chain - ## HITS:1 COG:HP0328 KEGG:ns NR:ns ## COG: HP0328 COG1663 # Protein_GI_number: 15644956 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Tetraacyldisaccharide-1-P 4'-kinase # Organism: Helicobacter pylori 26695 # 4 296 8 301 312 317 58.0 1e-86 MKTLERYFLAPSPLQKMLSFCLLPFSIIYCIIATTKRKIAHFEDFNIPIISVGNLVLGGS GKSPFIIEIAKDYEDCFVILRGYGRKSKGLKIVSQKGEILETPKTAGDEAIMLAKILKNA SVIVSENRKKAILEAKKMGAKVIFLDDGFRFNFKKLNILLKPKLEPYFDFCIPSGGYRES KKAYKEADIIAQEGIDYNRKVELLYPTERMLLLTAIANPSRLDSYLPNVVGKIILKDHSY FDKTKILESYATLNATSLLVTQKDAVKLEEFGLPLSILQLELSIAPNIKEQIKNYIAAN >gi|197283044|gb|ABQU01000006.1| GENE 30 28660 - 29790 943 376 aa, chain - ## HITS:1 COG:MJ1066 KEGG:ns NR:ns ## COG: MJ1066 COG0399 # Protein_GI_number: 15669255 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Methanococcus jannaschii # 4 374 7 384 386 208 34.0 1e-53 MLKIPYFIPDITESEKNIIANVLEYPSHNIISELEEEFKKYIGTKYAVSAISGTAAFHLC LFAMDIKRGDKILCSINCHPSFPEMIRHFDAEPIFVDIQEDTFEISYEKCKEALEKNNTK KLRAIIVSHIAGQVCEMEPFYQLADKYNIKVIEDATMALGLTHNGVKIGNQKSFATIFSI VLDSHNPVAQAGFLTTQDEEIASKAALLRYHGIVSEKVTSIRPQYLYDVIGIGNKYNLSF LDAALCLSQLRRIEHIIQKRKEIADYYMQSLKNAPHISMPIIKNEHIFFHFIIKIDKNRD HFAKELKESGIETALHFVPLHLLTYYKTKYKLKISDFPIALKNYQQILSLPIYSAMKKED IDYVCKEVLRLANQRV >gi|197283044|gb|ABQU01000006.1| GENE 31 29791 - 30558 519 255 aa, chain - ## HITS:1 COG:jhp0312 KEGG:ns NR:ns ## COG: jhp0312 COG0171 # Protein_GI_number: 15611380 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Helicobacter pylori J99 # 2 250 3 254 260 244 49.0 1e-64 MRNYQKIIETLVDFLQKKVKEKGFKSVVFGLSGGIDSAVVAVLCKQAFGDNIHGILMPSL QSSTNSIQDALELCESFKIPYSICPLEKPQKAFLQTLEGLQNNPSRIGNLCARIRMIYLY DYAFANQSLVIGTSNKSEILLGYGTIFGDLACAINPIGNLYKTEIFKIAKILQIPQSIQN KAPSADLYEGQSDEKELGFSYAILDEIMLSLEKGLSKKEMLEKNLSKTAIEFVLQRMQLM EFKRKMPEIASLEGL >gi|197283044|gb|ABQU01000006.1| GENE 32 30667 - 31833 942 388 aa, chain - ## HITS:1 COG:PA4113 KEGG:ns NR:ns ## COG: PA4113 COG2814 # Protein_GI_number: 15599308 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Pseudomonas aeruginosa # 4 365 7 368 396 292 45.0 9e-79 MKNTSLNTWLGVIAISLGAFILNTSEFVPIGLLSLIAQDFQMSEAKVGFLISMYAWVVAL ASLPLMLTFSKVELKRLLLCVMALFVISHILSGMANSYTMLIISRIGVAFSHALFWSIAT PMAVRAAPEGKQSLALSFVVTGTAIAFIAGLPLGRVIGLYLGWRTTFLVIGAIAFLVMLV IWRVFPTMPSTGAISIRSLPQILKTPYLLGIYLLTILLTTAHFTGYSYIEPFLAKSANFD KTDITLILVAFGAVGFLGSFLFTKYHDNHTLGFTYFAIFGITFSLFILQLASYNPFLMIV ACIFWGLCITIFNLTFQSKIIHLVPKATSIAMSMFSGIYNIGIGSGAFIGGIVVDKLNVS FIGYIGGLIAFLGCIYYITAKKPPKAIK >gi|197283044|gb|ABQU01000006.1| GENE 33 32018 - 32734 1093 238 aa, chain + ## HITS:1 COG:no KEGG:WS2123 NR:ns ## KEGG: WS2123 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 238 1 244 246 205 52.0 9e-52 MTQEELDALLNENILDEADEQEAKVEAKEEVPEEQFEDKHGKIDESKGVKAADFRIDSDA SWPPPPPTVEHKVVHQLDDVTRDSEVKATETFDKLELISNAGMDIEEGLAKIENFINSQE DMLQKLHSKFPNFHTFSQKLEEIAEVRGVVGKITNAVQDVSNASLEAMDIMQYQDIHRQK IERVINVMRALSRYMSSLFEGKIDDTKRVSSAVHIQGDKTENVVNEKDIEALIASFGK >gi|197283044|gb|ABQU01000006.1| GENE 34 32740 - 34014 1260 424 aa, chain + ## HITS:1 COG:HP0169 KEGG:ns NR:ns ## COG: HP0169 COG0826 # Protein_GI_number: 15644798 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Helicobacter pylori 26695 # 5 424 1 420 422 601 69.0 1e-172 MNKELKKPELLSPAGNLRKLKIALEYGADAVYGGVSHFSLRNRSGKEFDFESFKEGIEYT HNRGKKIYVTINGFPFNSQIKLLEKHIQKMAELNPDGFIVAAPGVVKLAQEIAPQIPIHL STQANVLNVLDAKVFYEMGVKRIVAARELSLRDAIEIKKALPDLELEIFVHGSMCFAFSG RCLISALQSGRVPNRGSCANDCRFDYEYYVRNPDNGVMMRLVEEEGIGTHIFNSKDLKLI EHLPMILESGVIDSLKIEGRTKSSYYAGITALAYRGAIDGYFKGDFRLQEYEKELETLKN RGFSDGYLIHRPYEKNNTQNHFTAISEGSYQVNAEVSEDGKFALCRHTIRVGESKEIVSS HNKEINEGKNELGEIYTNGDKKFMRFDKILLENGKELESIHSGNENRIVLPLSLPPFSFL RQKI >gi|197283044|gb|ABQU01000006.1| GENE 35 34011 - 34172 152 53 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310395|ref|ZP_04809550.1| ## NR: gi|242310395|ref|ZP_04809550.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 53 1 53 53 81 100.0 2e-14 MSNLDKTIRLIIAMILYFIFGFVCQSWWWLISLLPLLSAVYGYCPLYKIFKKS >gi|197283044|gb|ABQU01000006.1| GENE 36 34185 - 35537 1394 450 aa, chain - ## HITS:1 COG:PM1477 KEGG:ns NR:ns ## COG: PM1477 COG0446 # Protein_GI_number: 15603342 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Pasteurella multocida # 30 450 39 449 449 271 34.0 2e-72 MQDKKISRRDLLKIMGISGIALGTSTLMPTAAQAKSTLAPNIAIIGAGLGGISLSAKLIK DLPNAKITIFDADPILYYQPGFTLIAGGIYNKQDTLYKKEELLDSKVKWIKENISLVNPD NKTLTTTSNQIYNYDYLIIATGTTYEFEKVKGLDENIINDKNTNITTIYTADGALKAQEM FNKIEKSGGKVLFAEPNTAIKCGGANKKIYFLLEDRLTKQGLRDKVEMHLYAGGNSMLSS PIHAAMIEQFFIGRNMPYSKQHNLVEIDTNNNIATFEKIMPYTENGISKIAKERIQKPFD YLFMIPRMTTSSFISDSGLAITKGDVAGHWVDVDQYTLQHKKYPHIFAIGDCAGIPKGKT GASIRKQYPVIAENLIAHLNGEPLKAKFDGYTACPLLTRYGKAVMVEFDYKGAAPSLPCF GATRESWLNWFVKIYLMKPMVMSGMIHARA >gi|197283044|gb|ABQU01000006.1| GENE 37 35736 - 37349 1215 537 aa, chain - ## HITS:1 COG:HP0645 KEGG:ns NR:ns ## COG: HP0645 COG0741 # Protein_GI_number: 15645269 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Helicobacter pylori 26695 # 20 535 20 554 560 285 35.0 2e-76 MKLIIALLTLLFCLVANAKDITLEYLKNQPKGISRDFYIWLFLQQNITPKEATQAYKLTS RENAKIFSLYYKKGDNKTLSRKTICQQMPLPKLLKQDTQCIAFGLTLKESQTLDKKTLLN LSKKLEKQDKMLSTHLRILASKDPFLNLIKTDSKTFASFYFNVSQELKQKLNAPIPKATL IQYISQNNIAFMRFLRQVIINPNMQHLNYSLTQISPKEILQFLDDESAFYLGINAIKYNN AQDSLQYFLHSSQVAKYTFEKNRGIFWAYLASKDINYLHKLSQSKSADIYTLASLEITNN TPQFEILYDIKTPTTLAKWNTKNPFEWEIIKDSYQKNPSQPILQKVYHSDTKPHFVWLNK QKDKEYFLKPFAEILSPYSNDTKALLYALGRQESLFIPTAISTSYALGVMQLMPFNVTAL AKKFKEENKISYLDMFDPAINIPYAEYFTRPLIKEFKHPLFVSYAYNGGPGFTRRLLAKN QLFKKSNPLDPWYSMEMIPYEETRKYGKKVLANYIIYQKSFGKDIKLLNSLQQTLLY >gi|197283044|gb|ABQU01000006.1| GENE 38 37358 - 37651 424 97 aa, chain - ## HITS:1 COG:Cj0844c KEGG:ns NR:ns ## COG: Cj0844c COG0762 # Protein_GI_number: 15792182 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Campylobacter jejuni # 1 92 1 91 93 70 59.0 9e-13 MVISTFIEAIAHILNMVINIYIWVVIIAALISWVRPDPYNPIVQILYKLTEPIYAKIRRF MPTIIGGIDIAPIIVILALQFINLFFVKLLFSFAHSF >gi|197283044|gb|ABQU01000006.1| GENE 39 37654 - 38976 1221 440 aa, chain - ## HITS:1 COG:jhp0588 KEGG:ns NR:ns ## COG: jhp0588 COG0008 # Protein_GI_number: 15611655 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Helicobacter pylori J99 # 1 439 1 436 439 454 54.0 1e-127 MLRFAPSPTGDMHIGNLRAAIFNYILSLQRNEKFLLRIEDTDIARNIEGKDKDIMFLLTL FGIKWDMLVYQSENFPRHRQLADYLISQNKAFYCYCTKEFLEQKREEAKNEHKAFRYDDS WAELQKDSNPKPTIRLKGSKTPMEFTDKIKGKIEFAPNELDSFVILKDDGIPTYNFACAV DDMLYDIDFIVRGEDHVSNTPKQMLIHQALNYQKNIEFAHLPILLNEEGKKMSKRDNASS VQWLLNEGYLPQAIANYLILMGNKTPCEVFTLKDSIQWFKIENIAKAPAKFDINKLRFLN REHFKLLNEQDLAALLGYKDSSIGALAKLYLQEASTLNELRDKIDKIFVKKSLLLNEVTM VDFQKELEILQNSLLEILATQDCYQKSYEEFKNLAMSASNLKGKSFFKPLRFLLTGAEHG PELSDLFPFLRFYLKDIIRK >gi|197283044|gb|ABQU01000006.1| GENE 40 39109 - 39855 622 248 aa, chain + ## HITS:1 COG:Cj1531 KEGG:ns NR:ns ## COG: Cj1531 COG0253 # Protein_GI_number: 15792839 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Campylobacter jejuni # 1 240 1 239 249 212 47.0 6e-55 MFFSKYSASGNDFILMHTFRYNEDSYSNLAKQICHRQEGIGADGLIVLKPHREYDFEWEF YNADGSVAEMCGNGSRAAGMYARDLGLAGNSQKFLSKAGMIGVEIEGDWAESALSKAEVL KQDICEFGKNWWLINTGVPHLVCEDLEIMGLNKEDLRFLRHKYNANINIASCREDRVLAR TFERGVEDETLACGTGMAAMFYYLLLANKVKNPCLFNPASKEDLYLREENGKLYLKGKVR KICDFIYP >gi|197283044|gb|ABQU01000006.1| GENE 41 39842 - 40048 283 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310401|ref|ZP_04809556.1| ## NR: gi|242310401|ref|ZP_04809556.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 68 1 68 68 114 100.0 1e-24 MEDFNYKLVMFGFSALCEDLEEVQRRLSLYPKERYELENGDECFLVNLKTKEIFPITLEN EKFVIKDK >gi|197283044|gb|ABQU01000006.1| GENE 42 40048 - 41280 1460 410 aa, chain - ## HITS:1 COG:CC3549_1 KEGG:ns NR:ns ## COG: CC3549_1 COG0281 # Protein_GI_number: 16127779 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Caulobacter vibrioides # 5 406 11 416 453 442 56.0 1e-124 MEDLKQTYPDSLPYHKGGKLEVIPRTRVENEHDLSLAYSPGVAVPCKEIQKDPNMAYEYT SKGNLVAVISNGTAVLGLGDIGALAGKPVMEGKAVLFKKFANINAFDIEVNEKDPDKFVE IIKAIAPTFGGINLEDIKAPECFYIEKQLKESLDIPIMHDDQHGTAIISAAGIINGAKIT NKKINDLKVVVLGAGGAAIACAKIAKKLGAKEIIMFDSKGAITTHRKDNLNGFKKDFIID KEINSFKEALEGADVLLGLSKGNILEAKDIEGMNKNPMIFVMSNPIPEISPEVIKEVRPD AIIATGRSDYPNQINNVLGFPYIFRGALKARAKAINEEMKLAAANALAQLAQAEIPDDLK AELEKIHKRKFEFGKEYIIPSPFDTRLKDFISNAVAQAAIDSGVARIKSL >gi|197283044|gb|ABQU01000006.1| GENE 43 41377 - 43317 1439 646 aa, chain - ## HITS:1 COG:no KEGG:WS0172 NR:ns ## KEGG: WS0172 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 19 642 16 639 675 177 24.0 1e-42 MKKLFSSKIFLSFCAVTIIILTLLGFIFSPFGNYFLAKALLATLQTHTQMQWKSNSFKLT PSHFSLEFSAKDGNLELFAQGEYSLFLRTLKGEFFAHSKGFATHFNQHTLYFKENQWIEG KFAGDFDNYILQASSNLIDSQSDIMAYFHYLNLQHLKLDLKNGSLAYLLEMLEEKQYGDG IINLTTNLSKNEEKFDGTLNINIEGGELNQEAFLSDFNLRIPQTNFMGELQSSIAQNTFT HQLKIYSTLGDITLNGTTNIQSLATNTDFNIELANLSPLSPFFKLPLNGAFSAKGIAKGD FKNMLLDGEIQLSNSPLNYNLNLQNLKPKTLKISSKNLKAHSLFLLFNKNPYFEGNIDLN MDLRDFSHGISGIITLKSQNLFINSPLLEEKTQIGFPSTHFIFDSKIELANGSGLLDYTL QSNLILLKTQQGHFTLHPFDFNFPTEFEVSKLQNLSFQNKTALQGSLKSSGNYTKDSFDL KGNIIYENSENPFSLLLTPQNFILRINQIPSSQIYTLFDKIPHYFNGIGNFSLNNDFNLQ ISNINFDIHKLTFQDSPLLREFQSKTQQNIAKENFSGYIYNTILQDKTIQSRIQLQSNAL KIQSQKIVTNLNNKKLNGDFTLTNHKGENKYTISGNISSPLIHSTK >gi|197283044|gb|ABQU01000006.1| GENE 44 43441 - 46224 2881 927 aa, chain + ## HITS:1 COG:Cj1061c KEGG:ns NR:ns ## COG: Cj1061c COG0060 # Protein_GI_number: 15792388 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Campylobacter jejuni # 1 926 1 914 917 1045 56.0 0 MDYKETLELPNTSFPMRGNLPQNEPKTYQKWKENAIYDRILENRKNASESFNLHDGPPYA NGHLHIGHALNKILKDIIVKFHYFQGKKVFYTPGWDCHGLPIEQQVEKKLGKEKKDSLPK TKIRELCRKHAQEFVEIQKNEFLELGVIGDFDNPYKTMEFAFEAEIYKALCEVAKKGLLK ERSKPVYWSWACQTALAEAEVEYEEKESDSVFVAFALQDSALEAIGAREVGLEQAYCVIW TTTPWTLPANSGIALNPNEDYALTSDGKIVLASEVEKLAALGVVENKILKVFKASILENT FATNPLNGRDSKIILGEHVAVGDGSGCVHTAPGHGEDDYFVGLKYDLPMLMPVDDNGCYD ETLIREKLFFNPDEFVGKFVFETHPRIFELLGKNLLLHTKIRHSYPHCWRSHKPIIFRAT KQWFIVMDEPFSKEGKTLREVALEEIDKTRFFPEHGKNRIRSMIENRPDWCISRQRDWGV PIAFFRDKRSGEVLLDSEILDFVAEIFEKEGCDVWWSKEIKDLLPQKYQKDSEHFEKIHH ILDVWFDSGSTWKAVLKSENYRSGSYPADMYLEGSDQHRGWFHSSLLVSCAVNEKAPYKS ILTHGFTMDENGEKMSKSKGNVIVPKEVLKEFGSEILRLWVAMSDYQNDQRISQNILKQV GENYRKIRNTIRFLLANTNGLDELQVENFNQIDLWILKQARECFNEVNRLFGEYEFSKAI QELTYFLNVELSGIYLDICKDNLYCNALTSKERKASQSVMAFITGRLFGILAPIFTYTIN EALEHTQSKAVLESCGISKGGDVFEILYTPLPSFENPKFDFEKLLALRSVFLEQIDGLKK DSVIKSTLEVDLAVPQAMLEFEELNLWLMVSQIRSEVKGEVLASFVFEGMEYKILKAQGF KCPRCWQYISQEVDEPCKRCKEVLEGQ >gi|197283044|gb|ABQU01000006.1| GENE 45 47038 - 49014 1912 658 aa, chain + ## HITS:1 COG:HP1114 KEGG:ns NR:ns ## COG: HP1114 COG0556 # Protein_GI_number: 15645728 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Helicobacter pylori 26695 # 1 658 1 658 658 904 70.0 0 MQKFVLNSSYKPAGDQPQAIEKLSGFIKDGSQYQTLIGVTGSGKTFSMAHIIQELQMPTL IMTHNKTLAAQLFSEFKGFFPKNHVEYFISHFDYYQPEAYIPRQDLFIEKDSSINDELER LRLSATTSLLAYDDTIVVASVSANYGLGNPKEYLEMIEKFEVGESYHQKSMLLRLVEMGY KRNDSFFDRGDFRVNGEVVDIYPAYSEDEVVRLEFFGDELEKITILDSIDKKPIRNLESF VLYAANPFIVGADRLKIAIKSIEKELAERLDFFKKENKMVEYERLKSRTEFDLEMIESTG ICKGIENYARHLTGKKPGETPYSLLDYFAQKNKPYLLIVDESHVSLPQFGGMYAGDRSRK EVLVEYGFRLPSALDNRPLKYEEFIHKAPHFLFVSATPAQKELELSKNHIAEQLIRPTGL LDPIYEVLSVENQVEVLYDEAKKVIARGEKVLVTSLTKKMAEELTRYYSDLGLKVRYMHS EIDAIERNQIIRGLRVGEFDILVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQT MGRAARNVNGRVLLFADKITPSLKKAMEVTDYRRAKQEAFNQAHNITPQSVSRKLDENLK NQDLGMLYEKAKKKEKMPKIEREKLVKELTKKMHEAAKRLDFEEAARLRDEIAKMRSL >gi|197283044|gb|ABQU01000006.1| GENE 46 49068 - 50663 170 531 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 320 505 11 213 312 70 27 4e-11 MVQITGLSMQYATKKLFENVNLKLDKGKRYGLIGANGAGKSTFLKILSGEIEPTSGDISF NPNARLGVLGQNQFAFEDFSIKDCVLYGNKRLYDAIKEKEKLYEAGDFSDEVNERLGELE MICAEEDPTYEYDVQIEKILEDLGFSATIHNELMSTLTGGDKFKVLLAQVLFPKPDILFL DEPTNNLDLRAISYLEEQLKRHEGTLVVISHDRHFLNSVCTHILDLDFRSVREFSGNYDD WYIASTLIAKQQEAERNKKLKEKEELESFIARFSANASKAKQATSRQKQLEKLDIQALEV SSRRDPSIVFRVNRAIGNEALNIIKLNFSYGDLCVLKDLTLDILPGDKIALIGRNGIGKT TFCELICENLKPQSGTIKWGATIERGYFPQNTTEIIKGEESLYEYLRGFDKKKETTEIRN ALGRMLFSGEEQEKSVGSLSGGEKHRIMLSKLMLEGGNFLVLDEPTNHLDLEAIIALGEA LYKYSGNVICVSHDRELIDAFANRIIEFKEDNEVVDFRGSYEEYLASQNLE >gi|197283044|gb|ABQU01000006.1| GENE 47 50672 - 53644 1982 990 aa, chain + ## HITS:1 COG:Cj1295 KEGG:ns NR:ns ## COG: Cj1295 COG4310 # Protein_GI_number: 15792618 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain # Organism: Campylobacter jejuni # 563 988 15 435 435 397 48.0 1e-110 MDLLCKALEESFVKYANNIALEVEGAKITYQELGFQSKILASLILNMRGGGGHLAVNSDK ILIFASRSALVYTSILACVLVYQTYVPLNPKFPSQRLLSMIKRSGARIMFLGRECYDSFD EIAESLESLVIVVEELGDLEERFPKHKFIVIPKILELGCNEGQPLESHIKSSLKSNLQSC VAFGGDFEQSCDCGSSSISNFPSKTAYLLFTSGSTGEPKGVMVSRDNLFAYTQRMLVKYR FSPQDRISNFFDITFDLSMHDIFCAFLSGATLCVIPKQSLFNPIKFIIQNNLSVFFAVPS LIAYLIKFKALKPNLITSLRLSLFCGEEFPTQNAKLWSEMCKNSVVENLYGPTEATIAFM SYCYGVELQEKIVPLGIPFDGLLVSLRDETGNEVTKGEKGEIWLGGDQIAQGYLNDREKT EQKFITKNGVRWYKTGDLGILKEINGEEVYCFLGRVDFQVKIQGFRVELLEIDNVLREVS KTQSVSVVIKNDGITSIVGVIEAKSIKSDEILKICKQRLPHYMIPTQILALESFPLNSNG KIDREQIRVWVESQFIENKKNFGVLMYELAQRLFKIPRSLSGNGNRETLRIINSILGGNL KVYEVPSHTQAFDWEIPKEWNVNEAYIITPSGEKICDFGENNLHLVGYSVPVRESLTFEE LKSHLHSLKEQKNAIPYITSYYKEYWGFCLSLELRERLEREFGDSKEKFEVIIDSKLESG FMSYGEVVIKGESNKEIVLSTYICHPQMANNELSGICVATYLAKYLSKIPHFYTYRILFV PETIGAIYYLSQHLEELREKCVAGFVLTCIGDEGAYSYLESRAGNNLADRAAKHILNSRY RGYKTYSYLQRGSDERQYCAPGVDLPFCTLMRSKFGEYSQYHTSLDDLSFISPKGLQGGF VMVREILEVLEINGVYKNTILCEPQLGKRGLYPQLSTKETFGVVKDMRNLLMYCDGKLDL IEIADKCGFCLLDMKEWIRKFVENGLLRKE >gi|197283044|gb|ABQU01000006.1| GENE 48 53648 - 53887 410 79 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310409|ref|ZP_04809564.1| ## NR: gi|242310409|ref|ZP_04809564.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 79 1 79 79 134 100.0 1e-30 MEIKQIVLEFLKDCNKECKDGNLFGNDGIDSIGFLELLGFLEDRLGVDLDLSEYDPQEFS TIDGFCGIIEQIKGKSNGD >gi|197283044|gb|ABQU01000006.1| GENE 49 53877 - 54596 585 239 aa, chain + ## HITS:1 COG:no KEGG:DMR_p1_00640 NR:ns ## KEGG: DMR_p1_00640 # Name: not_defined # Def: hypothetical protein # Organism: D.magneticus # Pathway: not_defined # 1 236 1 236 241 172 35.0 1e-41 MEINWESIYKKDFISFKDCYLTCDGYCCKNFFGSGFKLLNQNAVVLPMLEGEYEYYKNQG GIYNISKEAKREEFSFGDKKLVLYYLSCECRGLCNPHCLRPLICRIYPYFPIVNIQGDIL DFYPASLMDLFFGSIKNHQCTLVREYQEELKTQLNESLKELLCYPLFVFIFRLMEIVAKH LQESLQNQCIDSLNEKERAEFLRKLEWNLLSRKAWNNQRFKEKANGIYQEMVAHYGEFL >gi|197283044|gb|ABQU01000006.1| GENE 50 54593 - 55396 363 267 aa, chain + ## HITS:1 COG:CAC2197 KEGG:ns NR:ns ## COG: CAC2197 COG2746 # Protein_GI_number: 15895465 # Func_class: V Defense mechanisms # Function: Aminoglycoside N3'-acetyltransferase # Organism: Clostridium acetobutylicum # 19 250 28 260 264 92 25.0 6e-19 MKAYTKIEIEEISQILSSQNSIILIHSALQNLGRLAGENFLDIPKIWLEIMMDYFDNLIM PCFNYSFPKTKIADLRILKSEVGVLSEVFRNHNTIRSTHPMFGFCGIGTEISEILKPNQI EHNPFCKESVYGRLWDKNALMVFLGIDIRVCTFMVFVEAMYGVKYRYFKPFFGKVIGDFG EIRGDFYHFCLPLGESLKVNFFRIQEEMIANGIIKKQVFGGSKVYYFCTKPFLEYVIKRL QEEPFILLQEAPKHFYIFKDGKESVIA >gi|197283044|gb|ABQU01000006.1| GENE 51 55440 - 55937 635 165 aa, chain - ## HITS:1 COG:no KEGG:WS0892 NR:ns ## KEGG: WS0892 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 10 164 1 157 162 187 59.0 2e-46 MIKKMLISTILSLSILNANECVCFELKGEFGEEIKAILKKYSKNLGSKDIQVVREDADLT IQERSFLESLIGTGEVAPSAKQANLENGKKLYDRDCASCHGEKGEISVAKKSPINTWSAQ NIADEIKSYQDQSFQGQSRFVKNQIATRYTKKDMEDVGAYVESLK >gi|197283044|gb|ABQU01000006.1| GENE 52 56319 - 57578 1480 419 aa, chain + ## HITS:1 COG:Cj1250 KEGG:ns NR:ns ## COG: Cj1250 COG0151 # Protein_GI_number: 15792574 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Campylobacter jejuni # 1 418 1 416 416 456 55.0 1e-128 MEIVIVGSGGREYSIGLALQKECRVDGIYFYPGNGATSRLGKNIDFKNYQEFVEFAITQK IGLVIIGPEAPLVDGLADMLRENGILVFGPSQKAAQLEGSKAYMKEFAKRYGIPTAQFIQ TQDYKEACDFIDTLNLPIVVKADGLCAGKGVIIAQSYEEAKSVTKEMLDGKSFGDSGKKV VIEEFLDGFELSIFAMCDGADFIVLPPAQDHKRLLDGDKGPNTGGMGAYAPSLLADSNLI DEVKKTIIIPTLEGMEKDGNPFSGTLFCGIMVVKNKPYLLEFNVRFGDPECEVLMPLFKN GLLDCFLGCARGDLKGVNYEIEEQVCVGVVVASKDYPYKNSKKEKIKILTKDSQDSLISY AGVSKEGEDLLASGGRVLVCVGKGNNVKEAAQNAYLMVDCVQFEGMQYRKDIAYQALEK >gi|197283044|gb|ABQU01000006.1| GENE 53 57578 - 58036 367 152 aa, chain + ## HITS:1 COG:Cj1251 KEGG:ns NR:ns ## COG: Cj1251 COG1714 # Protein_GI_number: 15792575 # Func_class: S Function unknown # Function: Predicted membrane protein/domain # Organism: Campylobacter jejuni # 4 151 3 149 150 91 35.0 5e-19 MDIEKIEETLAREEIELAPLWKRLVAFIIDDLLISMVLIGINWDSIVQNSHDKEAILGIV SSSWIALYIIKIVYQWLFVCFYGATIGKIVVKIRVIEVGLLDNPKMGQSFVRSCFRILSE MLMYLPFLFVFENRIYQALHDKVAKTIVVNLK >gi|197283044|gb|ABQU01000006.1| GENE 54 58046 - 60178 2424 710 aa, chain + ## HITS:1 COG:jhp1138 KEGG:ns NR:ns ## COG: jhp1138 COG1452 # Protein_GI_number: 15612203 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Organic solvent tolerance protein OstA # Organism: Helicobacter pylori J99 # 27 706 35 758 766 360 31.0 7e-99 MIKKSLCLVSVVAALALSPSNMEARAAIKQFNQQQESIFEFLADDMEYNKTQIIGKGHVT IINLDYFVTANKAIYDTQKQEILLSGNVNAYKGNSLYLKSQEVKIRLQEDYSFLEPFYLQ DSESGLWVDSKSAEFNNNIYQTKETNISTCSVNNPIWTIKAKEGEYDANDEWLTVWHPRL CIYDVPVLYFPYLSFSLGYKRKTGLLYPLVGNSSDDGFFYSQPIFIAPDDNWDMTFMPQI RTKRGGGFYNEFRMIDDQDKILWVNLGYFGNSRSYQQTYDLENRDHYGIQLKYERENLFS KPENYFYEDGLYVDISQISDIDYFRLQEEDAQNIADLQGNLLTSRLNYYLKSSEDYLGFS ARYYSDLEQTSNANTLQTLPEIQYHRQIDNILLDNLYYSFDYKASNFTRPVGYRAIQQEA ELPIIYTQSLLNDFLNVSLSPIFYGTSVDYSNKQQDLNLNNGRYFSQYYRFKANTDLVKK YDSFGHTISLEAEYTLPGFEHKEGDFTSFFTLPGDRQELKLGGTQYFYTLDNSLILSHKM EQYFYFEDNDNKLGELENEIQYFYNNQWSFVSDIFYSHKEARISEATHQVNYESDYIKAS FGHFVRESFAKEDWINGRFGEANYINMGFRKEFENFDVFANAGYDYREKYFKTWQVGVDM QIRCFSFGVKYVSEIYPMLTSRGAEARDDKYILFTIQFIPLLSSDLKMGS >gi|197283044|gb|ABQU01000006.1| GENE 55 60187 - 60873 570 228 aa, chain + ## HITS:1 COG:jhp1137 KEGG:ns NR:ns ## COG: jhp1137 COG1926 # Protein_GI_number: 15612202 # Func_class: R General function prediction only # Function: Predicted phosphoribosyltransferases # Organism: Helicobacter pylori J99 # 17 221 16 220 234 169 39.0 4e-42 MLGAGNNTHSLMRKALFENRNDALQKLLNNMPLSFFEKQDCVVVGISFEGILLANSLAQA IKAPLGFLFTSPILAPNNPECEIAMATETHDVVISDELVRSFEISLDYIYGEVQRQYEDK MLPLIYQYRKGNPLISLKNKRVLLVDDGIDSGLTALAAIKSVTTLQAKTIHFATPVAPYE VAKVMEEVTDGIFCLYKSKNFVDIGYYYKDYPAVESAKIEEIFANMQS >gi|197283044|gb|ABQU01000006.1| GENE 56 60888 - 63032 182 714 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|222151374|ref|YP_002560530.1| 30S ribosomal protein S1 [Macrococcus caseolyticus JCSC5402] # 555 710 159 343 387 74 27 2e-12 MGQAILSFLEKEEKYIFDKFAKQCSGSVYLQSGNNVVLATVAIDTQEVVEEDFLPLTVQY IEKAYAAGKFPGGYIKREAKPGDFETLSARIVDRSLRPLFPKGYCYPTQITILVLSADQD ADLQLLALNAASAALYVSEIPLYSPVSAVRIGKIGDNFVINPSLKQLEESSLDLFVSGVN EDLLMIEMRTFGGIKTQEGQAIFSANELQEEEMIEALEIAKNAISQKSKLFVEHFKDYIK PSLNLEQTRKTYVCQKILEYIQSEHLGELKGIIQSLSKTERHSLLMAFARKIQKEWEEKY PQDTQDLSKRTLETILKIKREIIRAMVLEESTRADGRGLKEVRPISIDTNFLPNAHSSVL FTRGQTQALVVATLGGDMDAQSYELLTNKASSKERFMVHYNFPPFSVGEASSISAPGRRE LGHGNLAKRALEASIINGDMRTIRLVSEILESNGSSSMATVCGGSLALVAAGIECTSLVA GVAMGLVCENDKYVVLTDIMGLEDHDGDMDFKVAGSRHGITAMQMDIKLGGLNMQILKDA LNQAKEARNHILNLMEEARGKIILNESVLPSSQIFSIEPSKIIEVIGQAGKTIKEIIEKF GVAIDLNRENGEVKVSGSNKEKVEAAKEHILKITKNLQDIYKVGDIYQGKVKKVVEFGAF VELPEGYDGLLHISKITNSRDEKASDVLSVGEMVEVEVLSLNKNKVELGLIKKL >gi|197283044|gb|ABQU01000006.1| GENE 57 63044 - 63298 366 84 aa, chain - ## HITS:1 COG:no KEGG:WS1260 NR:ns ## KEGG: WS1260 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 4 84 5 85 85 72 46.0 4e-12 MNNEKKNEIQYPCTWHYRIIGNSKEELIEAAFELLEKEFIHTLGKESSGGKYHSINLEIL VETKEERDQIFATLHKDSRIKFVL >gi|197283044|gb|ABQU01000006.1| GENE 58 63309 - 63740 337 143 aa, chain - ## HITS:1 COG:HP0496 KEGG:ns NR:ns ## COG: HP0496 COG0824 # Protein_GI_number: 15645123 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Helicobacter pylori 26695 # 7 135 2 131 133 103 41.0 1e-22 MQPKTYQTRIYYEDTDCGGIVYHANYLKYCERARSEWFFAQGILPQQNNIGFVVKNMNLD FLSPAKLGDLLTIHTEILEQKNASITLKQTILRESLSKQTQTKKPIFVAIITLVCFESTT QKITKIPQWAKEIFNTPHQNQIN >gi|197283044|gb|ABQU01000006.1| GENE 59 63983 - 65038 692 351 aa, chain - ## HITS:1 COG:jhp0042 KEGG:ns NR:ns ## COG: jhp0042 COG2957 # Protein_GI_number: 15611113 # Func_class: E Amino acid transport and metabolism # Function: Peptidylarginine deiminase and related enzymes # Organism: Helicobacter pylori J99 # 1 337 1 329 330 330 51.0 2e-90 MKKFYAEWEKQDGIMLAFPHKDSDWNEYLEEAREVYCQIIYEISKIETCILLCQNKIETK TFLKQQAKTHKWDLNLKNLYLIEMPTNDTWARDFGGITICKNNKNIVLDYGFNGWGLKFA SNFDNNITRNLYKLGILKNIQTKKLILEGGSIESNGEGIVLTNTQCLLESNRNPAYTQKR IEKILKKDFGAKKILWLNNGYLAGDDTDSHIDTLARFVNTNAIAYLKCEDKNDEHYPALA KMEKELKKLKNLEGKPFKLIALPFCEAKYYHNERLPATYANFLFINGAVLLPIYNDKNDK KAIEILQKALPKHKIIPIDCSILIRQHGSLHCISMQFPKNTLNYKALEKLR >gi|197283044|gb|ABQU01000006.1| GENE 60 65103 - 65720 802 205 aa, chain + ## HITS:1 COG:no KEGG:WS1599 NR:ns ## KEGG: WS1599 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 12 205 7 186 186 156 48.0 4e-37 MSIQSVKSSMDYTQDLQSAMASNPLSKETTSAEDREKNIQEAASKIDAKSVMTSYIVQFQ MSVSTSSENNFGAQSSVGLMGSSALEDSAKLNNILSGLDLASIGYDGKALQDLTTQEAKD LISEDGFFGVAQTSSRIADFVLAGAGDDVEKLQAGREGIIRGYEQAQKAWGGELPDISEE TLQKALEKIDKKLSELGINVLEQEA >gi|197283044|gb|ABQU01000006.1| GENE 61 65723 - 66724 542 333 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229879751|ref|ZP_04499249.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Slackia heliotrinireducens DSM 20476] # 1 320 439 765 781 213 39 3e-54 MLLSIESSCDDSSIAITQIKNKKILFHQKISQEKEHSSYGGVVPEIASRLHAKILPQILE KVKPYFHELKAVAVTIEPGLNVTLLEGLMMAKTLCFSLDLPLIGVNHLKGHLYSLFLEKD SIFPLGALLVSGGHTMLLEAKAFDEIRIVAQSIDDSFGESFDKVSKMLGLGYPGGPIVES CAKRGNAESFGFSLPLKSKKQFAFSFSGLKNAVRLEIEKGNKQDEKFVADICASFQKTAI QHLCQKCKIFFEQNARDSRGWKHFGIIGGASANLSLREKVQKMCDEFGISLLLAPLEYCS DNAAMIGRVGLESYLRGEFSPLEIQTKPKIQSI >gi|197283044|gb|ABQU01000006.1| GENE 62 66900 - 68207 1412 435 aa, chain - ## HITS:1 COG:jhp1115 KEGG:ns NR:ns ## COG: jhp1115 COG0124 # Protein_GI_number: 15612180 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Helicobacter pylori J99 # 3 432 2 435 442 444 53.0 1e-124 MPITPRTLSGFKDRLPKEAYAKSQMLKSIINSFEKFGFSPIETPHLEYAEILKKQGSDEI QKEMYHFFDHGNREVALRFDLTLPLARFISQYKNDLGLPFKRYCIGNVFRGERAQKGRYR EFTQCDFDFIGTESLGSDIEILQVIYQTLSDLGLKNFTIHINNRKIFNGLCQSLNAESYT AEILRIIDKIDKIGKDSVTKELQDKTPLQKEQIQVLLDFISLKQEGDSLQFLSSLNHYKN INPTLKEGLEELESLCEILSKLIPQNFYTINLSIARGLGYYTGIIYETILNDLPNLGSVC SGGRYDNLTQNFSNDKMSGVGASIGLDRLLAGLEELNLITQNTPAEAILIPLNNLQYAYT FAQNLRNLGMKIEVYPEITKPQKAFKYANNKGYKWVIITGENEESTNTASLKDMQSGEQK DQLSLQTLSQIILDS >gi|197283044|gb|ABQU01000006.1| GENE 63 68348 - 68551 358 67 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224418082|ref|ZP_03656088.1| 50S ribosomal protein L31 [Helicobacter canadensis MIT 98-5491] # 1 67 1 67 67 142 100 6e-33 MKKGIHPEYVPCKVTCVTSGKEIEVMSVKPELRIDISSFCHPFYTGSDKVVDTAGRVEKF KQRYNLK >gi|197283044|gb|ABQU01000006.1| GENE 64 68560 - 69375 626 271 aa, chain + ## HITS:1 COG:Cj0154c KEGG:ns NR:ns ## COG: Cj0154c COG0313 # Protein_GI_number: 15791542 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Campylobacter jejuni # 1 269 1 269 274 244 47.0 1e-64 MVTFLPTPIGNLQDITLHTLEVLEKCEVLLCEDTRVTKKLISLLVERNLLKAKEYQYLSF HTHNEKEFLSNVSLEFFSKNIGFLSDAGMPCISDPGVSLVRFLQENNLEYEVLGGISALT LSVAFSGIVEKEFLFLGFPPHKKKEKLETLMEHLKNPYPIIYYESPHRLLETLEIIENID NQREIFLAKELTKKYQQTFKGKIREILLDLKKGVIRGEWVVVIEGSKKNTHENVLTQEMV YSLDIPPKIKAKILSKINNKPASEYYNALCK >gi|197283044|gb|ABQU01000006.1| GENE 65 69402 - 70088 224 228 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 3 227 9 246 255 90 30 2e-17 MVVYGKHIVELILLKYQYLIENIYLAKEVDKSFFGLLKKTKKQIIKLDAKKAQAMARGGN HQGYLLEIKPLEVLEFSKIKEMDFVLVLCGISDVGNLGSIFRSAYALGVDGIVVCGIKDF KQEGVLRASSGAMLGMPFCVVHNPLDVINELKQSDFTLFGTSMQGKDLQNALSGKKALFL GSEGHGLSNKILAKMDYNLTIPMKREFDSLNVGVAGAILIDRITNGRN >gi|197283044|gb|ABQU01000006.1| GENE 66 70075 - 70977 921 300 aa, chain + ## HITS:1 COG:no KEGG:WS0447 NR:ns ## KEGG: WS0447 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 2 300 3 328 328 119 30.0 1e-25 MEEIEKLKVIGAKEISKKTHMALNKIEAILEMAYGNLEDKATTIGLIQILEREYHLDLHQ WCQEYEKFWEEHKSNSEKMEANINFKISHETMQENDNKKSIIVVAVVIVLVALGIYLYFN FHNLQDTITEKETISTPKPESALENLQEEGIIKEEAKSIETNATLEMQENNATQEILEPN VNLDSSASTPINELPAPQAIQEEIKIQKEVEIVPFSQMWVGIIYLDTKEKTSFLINEPLK VDLKRPQTIITGHGMLEIQNNDNTEKYNLAGRMRFFVDEDGNFSSISIEQYNRYNGGLGW >gi|197283044|gb|ABQU01000006.1| GENE 67 70971 - 71801 816 276 aa, chain + ## HITS:1 COG:no KEGG:WS0448 NR:ns ## KEGG: WS0448 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 21 275 19 274 276 176 36.0 9e-43 MVNKIIFILFFICLGSYAIAKENSLDYSIVSLLGVQDYKVNQKFIQKLFENQEEFLNGVG EPDLYKISKILKENGLLKLTFGKPMELEIAFEIKENPATFTSVLYDVLGAMGYYYFLVKQ SMLEDEKYHFVLSMNTEYAVDPVLLQERLLAYGYHISKIEKRNINQWVYEVWQGDFQYPK AILLTINETNNHANLKGEYWYKIQEGKNISFASVGGVSWYPKIVFFDKNLKIINIVSSQD TMREINLKIPENTSFIKVSDNYLPITIKNGLNVLLK >gi|197283044|gb|ABQU01000006.1| GENE 68 71820 - 73031 1167 403 aa, chain + ## HITS:1 COG:Cj0150c KEGG:ns NR:ns ## COG: Cj0150c COG0436 # Protein_GI_number: 15791538 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Campylobacter jejuni # 1 400 1 400 400 572 66.0 1e-163 MFEEIEFERIKRLPKYVFAAINEIKLQMRQNGEDVIDFSMGNPDGATPNHIVEKLCEAAH KPKNHGYSASKGIYKLRLAIADTYKRKYNVNLNPDTQVCVAMGSKEGYVHLVQAITNPGD TAVVAEPAYPIHYYAFMLAGANVATFGLKWNENFELDVEAYFESLKKALHNTLPKPKFVV TNFPHNPTTVVVYKEFYEKLVALAKQERFYIINDVAYADLSFDGYVAPSIFEVEGALDVA VEGYTLSKSYNMAGWRVGCFVGNERLIGALQKIKSWLDYGIYTPIQIASTIALNGNQECV KEIANKYEKRMEVLIESFGAAGWKMQKPRASMFIWAEIPECVKHLGSMEFSKRLLQEAKI AVSPGIGFGNHGDNYVRIALIENENRIRQAARNLKKFLKQFSN >gi|197283044|gb|ABQU01000006.1| GENE 69 73037 - 75442 2025 801 aa, chain + ## HITS:1 COG:Cj1155c KEGG:ns NR:ns ## COG: Cj1155c COG2217 # Protein_GI_number: 15792479 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Campylobacter jejuni # 5 798 5 784 785 582 41.0 1e-166 MKRLCDHCHLEFDEKVLIKTQIAGKEKYFCCKGCEGVYRLLQDQGLGDFYSKLGSNTLEP IQEDNDNNLAYFDSPAFFEHYVEKRGKTCEISLVLEKIHCIACVWLNEKILSLQEGIVSV NINYTNHKAVIVFDPAKIKISQIIHTIRQIGYDAHIYDSRIQEVYAKKQKRNYYIKMVVG IFCVMNIMWIAVAQYAGYFSGISQEMRNILNFAGFVLATPVLFFSGSIFWRGAYVAIKYK MPNMDLLVISGATLAYIYSIYASFMGGETYFESVAMIITFVLIGKFLEIRGKKSAVDSLD TLNSQIPLSVNVKRGDVIEEKAVEAVEVGEIVEVKPGDRIALDGELLSNEALCDESALNG ESLPQSKKKGETIYSGSIAVNLSFCYQITKKFKESMMTRIISLVEDSLNARPRIQEIANQ ISRYFSSVVLTFALGTFLAWYLWIGADFNQSLMVMVSVIIIACPCALALATPIASLVGLG EAFKRKIIFKEARFLETIAKANILVVDKTGTLTEGKLRVIGEKNFAATQCDFEILRGMLE KSSHPITQALKKHFGDFGNKVEIQAIEQINARGIRAKVGDDIYIGGNLELLQENGVESLE KLQEAENTIFYFAKNSCLLAEFQLEDSIKKGAKEAILAIEAMGIGVILLSGDNANVCKKV AENLGIKQYYAKQNPLQKADFIEDLRAKGNVVVMAGDGINDSIALGKSNIAIAMGNGIDV AINISDIIILDSSVNGILEAFKIGRKTFKFIKENLLISLLYNVITIPLAMLGYVIPLIAA IAMSLSSLIVVGNSMRIKSDS >gi|197283044|gb|ABQU01000006.1| GENE 70 75667 - 75771 106 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPYFAKFLKNYKDIKSNFGGAVGDQTPVRKSDQQ >gi|197283044|gb|ABQU01000006.1| GENE 71 76197 - 77003 744 268 aa, chain + ## HITS:1 COG:HP1058 KEGG:ns NR:ns ## COG: HP1058 COG0413 # Protein_GI_number: 15645672 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate hydroxymethyltransferase # Organism: Helicobacter pylori 26695 # 1 268 1 269 270 315 56.0 6e-86 MSIQIENKQTTITQIKNKKNKEKITMITAYDALFAKIFDGEVDIILVGDSLHMSFFGESD TLSASLDSMIYHTKAVCNGAKKSLVVCDLPFGSVSNPACALESAIRVYKETKAQAVKIEG GIEVSDTIRLLVQNGIAVMGHIGLKPQFVRSEGGYKIKGKDKEENERLLQDALALQKAGV FCMVLEGVKSEVAREIAKSIEIPIIGIGSGVEVDGQVLVWSDAFGFFEDFKPKFVRQYLE GAKMVKTSLRKYVQDVKNGDFPSNNESY >gi|197283044|gb|ABQU01000006.1| GENE 72 77019 - 78020 1272 333 aa, chain + ## HITS:1 COG:Cj1362 KEGG:ns NR:ns ## COG: Cj1362 COG2255 # Protein_GI_number: 15792685 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Campylobacter jejuni # 1 333 1 333 335 459 71.0 1e-129 MERIVEIEKIALEGDEEVRLRPNNWSDYIGQEKLKKNLQVFINAAKKRNDTLDHILLFGP PGLGKTTLAHIISGEMNAPIKVTAAPMIEKAGDLAAILTNLSEGEILFIDEIHRLSPAIE EILYPAMEDFRLDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMISNPLRDRFGMQFRMQF YEKEELARIVQIAAIKLQKECSSDGALEIAKRSRGTPRIALRLLKRVRDFAEVAEEGIIT KERTQYALNELGVNEYGFDELDLRFLKIICESRGRPIGLSTLAAAMSEDEGTIEDVIEPY LLINGFLERTARGRIATQKTYELFSFKDIGSLF >gi|197283044|gb|ABQU01000006.1| GENE 73 78047 - 80671 3474 874 aa, chain - ## HITS:1 COG:jhp0280 KEGG:ns NR:ns ## COG: jhp0280 COG1344 # Protein_GI_number: 15611350 # Func_class: N Cell motility # Function: Flagellin and related hook-associated proteins # Organism: Helicobacter pylori J99 # 1 874 1 828 828 545 39.0 1e-154 MRIGTNSSYTMMQYYQGKTQAGLNNILAQMNGLKIQFGYQDTSIFNKTLELDYNITTLTQ SKELANNALTFTKHTDTALSELASSMDNFKSKLVQGANDIHSETSRLAIAQDLKSIRDHF LSIANTSIGGEFIFGGTATTTKPFNSDGSYNGNNATLNALLSSNNSLAYNITGYELFFGS DNDTNRVISTNIPKFNQSALNPQIMDPDHPTGNSEEVYITAEDTLRDLVGDNDSDPSNND PEVFYITGRRPDGTAFKSKFEMGVAYTDEDQSATVQDLLDRIGKEFGNTETSKVVDVTLN EWGEIEIKDLTGGRSNIEFYMVSSSYQDPNNPDGVGVSDIDALLNSGAKVNTYVQSPYLG SFSNSQITSVEDYNDHRIHTIPTTFRNSNNEIAKTSTLLSDIFPEGVTQLNLSGISANDA DNNPTNTNVNSTFTITPTSTIQDLMDSIENMYNAQPGANVEVEFSNGKITIIDNNVSKKT PPDQAQDTLPYIGESSLSLTITAQDAGGNNVNGFRNDYSVEYDRVGFSKNGSILSSNVSQ VIRDTNEYATMDTKLSQVAGVGLDGHTYNFEVKDVNGTPISGRIEFRDTGSVMIIDSPAT INGVDIDGIEIPILNPNGNPPQVASEATPADDVTYQQLADTLGMVLNLSNTNPADLQNVF DPAGANFDDPAIKLSYETMISNSKNNVSISLDVNGQMQVKDLNRTPTRMEFMLYDSESSN FALDANGRVNTTGHPALTFQANNAIVADDPHVNFFQQIDTIIQALEDGTYRPGGTDEYDD SMRNPGIQNALLVFDHLADHINKAHTKNGAQGNAFEYSIERTEVLIVQAKTLRSDTIDTD FAEAYLQFSTLSLNYQAMLSSIGKVSQLSLVNYL >gi|197283044|gb|ABQU01000006.1| GENE 74 80828 - 82579 2000 583 aa, chain + ## HITS:1 COG:Cj0640c KEGG:ns NR:ns ## COG: Cj0640c COG0173 # Protein_GI_number: 15792000 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Campylobacter jejuni # 1 583 1 583 583 835 67.0 0 MRSHYCADLDEKDIGREVKLCGWCNTYRDHGGIVFIDLRDRSGLVQLVFDPKDFEQSHKI ASEVRDEYVLIAKGKVRKRGEGLENPKLKTGKIEVLVSELSIENKSLTPPIAVGDESVGE DVRLKYRYLDLRNPRLQEIFITRSKVAQAVRNTLSNLGFLEIETPILTKATPEGARDYLV PSRVHHGEFYALPQSPQLFKQLLMVSGFDKYFQIAKCFRDEDLRLDRQPEFTQIDIEMSF VEQKDVMGVAESVLKSIFGACGIEVQTPFPHYTYKEVMETYGSDKPDLRYDLPLVEVSDL FVDSSNEIFASIAKDSKKNRFKALCVKGGDSFFSRKTLGEAEEFVRKFGAKGLAYLQIKE NEIKGPLVKFISEQNLKTLLERVGASVGDIVFFGAGAKKIVWDYMGRLRQKIANDMGMIN ESVYKFLWVVDFPMFERNDDGSISALHHPFTMPRDLEVEDIEEINSVAYDVVLNGFEIGG GSIRIHKQEIQSKVFELLGITQEEAKDKFSFLLEALQFGAPPHGGIAFGLDRIIMLLCNA HSIRDVIAFPKTQKATCPLTDAPSPAGEEQLRELHIRVRETKK >gi|197283044|gb|ABQU01000006.1| GENE 75 82588 - 83160 657 190 aa, chain + ## HITS:1 COG:Cj0639c KEGG:ns NR:ns ## COG: Cj0639c COG0563 # Protein_GI_number: 15791999 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Campylobacter jejuni # 1 187 1 187 192 227 66.0 1e-59 MKKLFLVIGAPGSGKTTDAEIISKNNTESIVHYSTGELLRAEVASGSEKGKLIDSYTSKG NLVPLEIVVQTIVDAISNAPKDIVIIDGYPRSVEQMLELDKILKGTNNITLANVIEVEVS EKVACDRVLGRARGADDNVEVFNNRMKVYLEPLAEIQEFYSVKGILHKINGERTIEEIVA EMEAFIKSRI >gi|197283044|gb|ABQU01000006.1| GENE 76 83169 - 83606 421 145 aa, chain + ## HITS:1 COG:no KEGG:CFF8240_0156 NR:ns ## KEGG: CFF8240_0156 # Name: not_defined # Def: hypothetical protein # Organism: C.fetus # Pathway: not_defined # 10 144 6 142 143 139 56.0 3e-32 MQNKIKWYLIVFLMIVGTSQVFGKEGVKPVNVVISLVEKSQWETAKLQVQAIQKSLKDDE AGDIELVMGGDSVLLFGKNSTSSDKIRKEIAALVKLPNVRVVACSGAMRRAKISKESLIE GVEQVKNAPREIVDRQLQGYAILNQ >gi|197283044|gb|ABQU01000006.1| GENE 77 83620 - 84138 671 172 aa, chain + ## HITS:1 COG:Cj0638c KEGG:ns NR:ns ## COG: Cj0638c COG0221 # Protein_GI_number: 15791998 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase # Organism: Campylobacter jejuni # 1 172 1 172 172 253 75.0 9e-68 MNLSKIEVGENPSKLNVVIEIPYGSNIKYEIDKESGAVVVDRVMYSAMFYPANYGFVPNT LSDDGDPADVLVLNEYPLQAGSVIKARLIGVLIMEDESGLDEKLIAVPISKIDPRYDNIK SLADLPQITLDRIKNFFETYKMLEPNKWVKVKEFQDLESAKAILDKAIQNYK >gi|197283044|gb|ABQU01000006.1| GENE 78 84326 - 88030 4012 1234 aa, chain + ## HITS:1 COG:Cj0737 KEGG:ns NR:ns ## COG: Cj0737 COG3210 # Protein_GI_number: 15792086 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Large exoproteins involved in heme utilization or adhesion # Organism: Campylobacter jejuni # 117 504 8 357 358 162 35.0 3e-39 MSNNPNSVIVWGGGANKPLINSLNTLNTLQNSNPKELAKNLNKIQNSNQLDLNHPNELKD SRLDLIQLESKIQDTKNLNQLKESKILNKIQEINLSKESKNLNKIQMKSSKTTLSKISIS IIASILLSQSLVALPSGGKFTHGSGSIKVNGKEMNITGNNTNHIIAWGGGFNINKGESVN FLGNNKSYLNLDYTNKASQILGNLNGNGNNIYLVNPSGVLIGQNASINANKFVASNTIDD TTLNNFKNKVNDINAITTFSPVFKPNKGNIVNLGSIRAREIVLIGNEVGLSNGVIGNKEK GGSITLVGNKVVIDADNTKIQSSGDLKITAMSGGVIQGSVATLKNNGYKFGDYNSLVFQD YIDSSGNEYKHNAYDRDTQKGFLTLATIGGSNDNNQRVQEWNDFASGLGYGDMQLVDEFR LLNDIDFSGKDITQAWSIKGSQGPVFTQFLNGNNHTLSNIDFTNVGFVGNGVSISYMGIF SYLYGAKISNLTLDNITMKVTRSDTPEYNLYIGILAGRAYNTQFENIKLNNIALDITSQT GTSGQNSVYAGGLVGYLHNSNVNAIGGSNININIKNKNAYTLGGGIIGAMYGSTIVNGNF SNITIEAKTNMDGAGFAASYVGGLAGMFGNGDGGISNFIIDSVKVVSQNVDNNGQKVDSS SEIYTGGALGRIGTGNINFKNILLKNISVVSLSENYDSNSYHYTGGFAGGGSPKDSEISF TNITLNDIKEVSALTETYTYGAGPKVGGFMGFGSSNGLYKNIVLNNVEGLKVQAITDAML GGLFGQYYASRGIENAIINGLGNMEMQLERNTSNTGYAGLIAGRGSPENLKNIDVLLKDG FSFNIKTNSEAITLDAAYLMANGVAPKNVENINVYGRVNFDIQGSKGEIKKDLEDEKYKG KDFNVDDTKDFSTAQEELNKRGDLFQTSGTFGQYYSFFDKDLLSKEIDKSFQYTPVDALP PLSESDIGDVSLSQDDFNQSILDSILGKDNQGNSNLIFDLLTQDLESIRQSLDFLVSFLD GENDIKELFGDYYKVNDNIYGALNQDLTINLKFSNFIEALKQNKNINLAFLKDYRDKLNT YNQNKELYQSGGLPSLEQESLKKLLEEQYNELLNLEQTAKTNLESLQGLIKDSFKIDTNY TIFAKESLSPLNFTINIGSLDNFEDTQGNGDNNNRFTPPSEVQKIADLVSKEAILILPAQ EKQEAIVEDGKERGRLCIVSDNAKTNNPCMAITY Prediction of potential genes in microbial genomes Time: Tue May 24 01:59:19 2011 Seq name: gi|197283043|gb|ABQU01000007.1| Helicobacter pullorum MIT 98-5489 cont2.7, whole genome shotgun sequence Length of sequence - 51141 bp Number of predicted genes - 48, with homology - 43 Number of transcription units - 22, operones - 9 average op.length - 3.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 226 - 285 8.2 1 1 Op 1 . + CDS 494 - 1510 399 ## PROTEIN SUPPORTED gi|149195933|ref|ZP_01872989.1| Ribosomal protein L22 2 1 Op 2 . + CDS 1542 - 2144 659 ## HH1869 hypothetical protein 3 1 Op 3 . + CDS 2154 - 3431 779 ## PROTEIN SUPPORTED gi|90020581|ref|YP_526408.1| ribosomal protein L16 4 1 Op 4 . + CDS 3480 - 4214 515 ## COG0785 Cytochrome c biogenesis protein 5 1 Op 5 . + CDS 4218 - 4724 281 ## PROTEIN SUPPORTED gi|229531703|ref|ZP_04421088.1| acetyltransferase, ribosomal protein N-acetylase 6 1 Op 6 . + CDS 4724 - 5365 577 ## COG0223 Methionyl-tRNA formyltransferase 7 1 Op 7 . + CDS 5381 - 5572 79 ## gi|242310445|ref|ZP_04809600.1| conserved hypothetical protein 8 1 Op 8 . + CDS 5532 - 5654 69 ## gi|242310446|ref|ZP_04809601.1| conserved hypothetical protein + Prom 5813 - 5872 4.4 9 2 Op 1 . + CDS 5893 - 7527 1618 ## COG0504 CTP synthase (UTP-ammonia lyase) 10 2 Op 2 . + CDS 7517 - 7699 186 ## gi|242310449|ref|ZP_04809604.1| predicted protein 11 2 Op 3 . + CDS 7777 - 9102 1155 ## COG0608 Single-stranded DNA-specific exonuclease 12 3 Op 1 . - CDS 9104 - 9373 255 ## gi|242310451|ref|ZP_04809606.1| predicted protein 13 3 Op 2 1/0.000 - CDS 9385 - 11817 2060 ## COG1033 Predicted exporters of the RND superfamily 14 3 Op 3 5/0.000 - CDS 11807 - 12382 647 ## COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component 15 3 Op 4 . - CDS 12385 - 13083 707 ## COG2853 Surface lipoprotein 16 3 Op 5 3/0.000 - CDS 13086 - 14954 1718 ## COG1154 Deoxyxylulose-5-phosphate synthase 17 3 Op 6 15/0.000 - CDS 14954 - 15814 1211 ## COG1317 Flagellar biosynthesis/type III secretory pathway protein 18 3 Op 7 19/0.000 - CDS 15807 - 16841 1218 ## COG1536 Flagellar motor switch protein 19 3 Op 8 1/0.000 - CDS 16844 - 18571 2124 ## COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein 20 3 Op 9 . - CDS 18582 - 19685 1173 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase - Term 19698 - 19743 0.7 21 4 Op 1 . - CDS 19753 - 21186 1024 ## WS1918 hypothetical protein 22 4 Op 2 25/0.000 - CDS 21264 - 22406 911 ## COG0438 Glycosyltransferase 23 4 Op 3 26/0.000 - CDS 22397 - 23515 856 ## COG0438 Glycosyltransferase 24 4 Op 4 5/0.000 - CDS 23512 - 24441 950 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 25 4 Op 5 . - CDS 24463 - 26172 217 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 26204 - 26263 9.0 + Prom 26160 - 26219 10.9 26 5 Tu 1 . + CDS 26332 - 27585 1457 ## COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase + Prom 27942 - 28001 9.4 27 6 Tu 1 . + CDS 28022 - 29449 1173 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) + Term 29536 - 29568 1.0 + Prom 30189 - 30248 9.2 28 7 Tu 1 . + CDS 30281 - 31699 1686 ## WS1780 hypothetical protein + Term 31707 - 31747 6.8 + Prom 31842 - 31901 5.4 29 8 Tu 1 . + CDS 31997 - 32083 73 ## + Term 32121 - 32157 -0.7 30 9 Tu 1 . - CDS 32155 - 33066 628 ## COG0679 Predicted permeases - Prom 33114 - 33173 4.8 + Prom 33052 - 33111 6.2 31 10 Tu 1 . + CDS 33131 - 33202 68 ## 32 11 Tu 1 . - CDS 33195 - 34604 1871 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Prom 34828 - 34887 11.6 + Prom 34582 - 34641 12.8 33 12 Op 1 . + CDS 34878 - 36896 2130 ## COG4771 Outer membrane receptor for ferrienterochelin and colicins 34 12 Op 2 . + CDS 36924 - 37625 729 ## COG0725 ABC-type molybdate transport system, periplasmic component 35 13 Tu 1 . - CDS 37648 - 38253 403 ## COG2833 Uncharacterized protein conserved in bacteria - Prom 38388 - 38447 3.7 36 14 Op 1 . - CDS 38492 - 39118 656 ## COG2095 Multiple antibiotic transporter 37 14 Op 2 . - CDS 39163 - 39888 645 ## COG1793 ATP-dependent DNA ligase - Prom 39935 - 39994 7.5 - Term 39941 - 39971 0.1 38 15 Tu 1 . - CDS 40005 - 41360 1544 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase - Prom 41408 - 41467 11.4 + Prom 41380 - 41439 16.8 39 16 Tu 1 . + CDS 41631 - 43133 1840 ## COG2931 RTX toxins and related Ca2+-binding proteins + Term 43136 - 43188 11.0 - Term 43211 - 43255 0.5 40 17 Tu 1 . - CDS 43284 - 44300 1151 ## COG0309 Hydrogenase maturation factor - Prom 44405 - 44464 1.9 + Prom 44268 - 44327 4.7 41 18 Tu 1 . + CDS 44421 - 44513 82 ## + Prom 44769 - 44828 4.0 42 19 Tu 1 . + CDS 44849 - 44989 76 ## 43 20 Op 1 . - CDS 44958 - 46073 1300 ## COG0489 ATPases involved in chromosome partitioning 44 20 Op 2 . - CDS 46083 - 47414 1427 ## COG0422 Thiamine biosynthesis protein ThiC - Prom 47479 - 47538 9.4 45 21 Op 1 . - CDS 47629 - 49038 1740 ## WS1780 hypothetical protein - Prom 49073 - 49132 11.2 46 21 Op 2 . - CDS 49143 - 49262 83 ## - Prom 49314 - 49373 12.6 + Prom 49308 - 49367 11.1 47 22 Op 1 . + CDS 49478 - 50107 691 ## WS0575 hypothetical protein 48 22 Op 2 . + CDS 50110 - 51139 1039 ## COG0754 Glutathionylspermidine synthase Predicted protein(s) >gi|197283043|gb|ABQU01000007.1| GENE 1 494 - 1510 399 338 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149195933|ref|ZP_01872989.1| Ribosomal protein L22 [Lentisphaera araneosa HTCC2155] # 6 301 17 306 340 158 29 7e-38 MKQSLVILALVILGFVGCGGEKTETSQADSNKVYEVKFAHVVSANTPKGKAADFFAKRVN ELTNGKIVVHVFPSAQLVDDDKVFQELKRNNVQLAAPSFSKFTPFAKEFNLWDIPFIFRD TEHLHKVMDGEVGQILKDVITNKGYVALDYWDAGFKQFSTNKKPIILPSDAEGQKMRIMS SKVLEEQTKAIKAIPQVLPFGEVYSALQTGVVDAAENPLSNLYNSKFYEVQSSITMSNHG YLGYLVVASEKFWNELPKDLQEKFMAAMKEATIYEREESAKEEKMLLDKLKADDKTGTQI FTLTEDQKKQWQDVMYAIYPKFYDLVGKDLIEKTMNTK >gi|197283043|gb|ABQU01000007.1| GENE 2 1542 - 2144 659 200 aa, chain + ## HITS:1 COG:no KEGG:HH1869 NR:ns ## KEGG: HH1869 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: Two-component system [PATH:hhe02020] # 2 200 5 205 205 296 74.0 3e-79 MIQKPFLYAHKSPGINRFFEILDMIIAGINKNVAVLGLVFGIVITAINVCVRYIAGFFPE IGSLTWAEEVARYCFLWSAFFGAAYGFRKGVHISVTMLIEKFPPPLAKACVLGTHILNSI FLGFMFYASVMVCYLNYEIGYMSEALHSVPLWVFLLCLPIAFFGATYRSIEKIYEVSWMD ADKVVRNAEEEMIHDSVIKD >gi|197283043|gb|ABQU01000007.1| GENE 3 2154 - 3431 779 425 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020581|ref|YP_526408.1| ribosomal protein L16 [Saccharophagus degradans 2-40] # 1 420 3 426 435 304 37 6e-82 MSVAFLLIVLFGLLLLGVPVAISLGVSAVATMLIFTSYDIMGVPEIMLNGLKPALMAIPM FILAGSLMSKGSSAQRIVDFAKSIVGHLPGGLPMSAILACIIFAAVSGSSPATVVAIGSV MFAALKAAGYPKSYSVGAITSAGSLGILIPPSVVMIVYGVTAEVSIEKLFMAGVVPGLMI GGMMMLYAYIGARRLGFKSTTPASFKERWSKFKEAFWALLIVFVVIGGIYAGIFTATEAA GISAVYAFVVSIFVYKDIKIKDLYAVFLDAAITTAMIFFIIGFAVVFAHLLTSERIPHII AESLVGMNMSWWMFLILVNIVLFIMGQFMEPSSVVMIMTPLLLPIALQLGIDPIHFGIIM IVNMEIGMLTPPVGLNLFVASSLTGLSLKDVTISIIPWLCVLLVGLVLTTYVPEISLWLP NLLER >gi|197283043|gb|ABQU01000007.1| GENE 4 3480 - 4214 515 244 aa, chain + ## HITS:1 COG:HP0265 KEGG:ns NR:ns ## COG: HP0265 COG0785 # Protein_GI_number: 15644893 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis protein # Organism: Helicobacter pylori 26695 # 3 241 10 240 240 161 44.0 1e-39 MFLFDKAPLGISFLAGILTFISPCVLPLIPAYLSYISEVSLSELKAYHTLDRRMRFVIVR NALFFVLGMGIVFVLLGVVAARILSGGILLSPYVAYFAGGILIIFGLHTAKVIEIPFLNY QKNAKFNVVHFSFLRDFFMPFLLGVSFSLGWTPCIGPILAGIISLASLRADEGIILMIVY TLGFSLPFLLCAFLVGYAFAFLDRIKRHFRLIEWCAGGLLIVIGILIITGKMEWLSNYLV KVLG >gi|197283043|gb|ABQU01000007.1| GENE 5 4218 - 4724 281 168 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229531703|ref|ZP_04421088.1| acetyltransferase, ribosomal protein N-acetylase [Sulfurospirillum deleyianum DSM 6946] # 1 140 3 144 162 112 46 3e-24 MRLKNFINLSQQESREVFLWRNSEEISCFMKTKNISWEEHIAFLEKLKEEVTKQYFLVFD GEVAVGVVDFVDIQRGDSCEFGIYQNPNLKGYGKGLMEVVIKYAFETLKVKNLYACAFNE NQKAISLYLKFGFILTKKDTKMSYFKCSRGGGVNNIFYGLPFFQREVS >gi|197283043|gb|ABQU01000007.1| GENE 6 4724 - 5365 577 213 aa, chain + ## HITS:1 COG:RP209 KEGG:ns NR:ns ## COG: RP209 COG0223 # Protein_GI_number: 15604082 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Rickettsia prowazekii # 41 164 79 203 303 63 32.0 3e-10 MKVAILTSPNQWFIPYAKDLQTKITKSDLYFSHQEIKQSYDIVFILSYHQIISKTFLEQH KHNLVIHASNLPKGKGWSPMFWQILEGKNEIVFSMFEADEKADNGDIYLQKTLILEGTEL YEELRKKQAKMCQELCLEFLEKYPHISPKKQEGSESFYPKRSLKDSELDPKKSLESQFNL LRILSNEEFPAFFYKDGKKFILKIYDSSMGVGE >gi|197283043|gb|ABQU01000007.1| GENE 7 5381 - 5572 79 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310445|ref|ZP_04809600.1| ## NR: gi|242310445|ref|ZP_04809600.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] # 1 63 1 63 63 106 100.0 6e-22 MILSPKEHSEILKISNDERIRKFLYTQHFISIKEHLGFVERLKKDLRKKYCAIYCCGKFF KKC >gi|197283043|gb|ABQU01000007.1| GENE 8 5532 - 5654 69 40 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310446|ref|ZP_04809601.1| ## NR: gi|242310446|ref|ZP_04809601.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] # 1 40 1 40 40 65 100.0 8e-10 MQFIVVVNFLRSVNFENKGQEVEFGFYANPNIAGLGRVME >gi|197283043|gb|ABQU01000007.1| GENE 9 5893 - 7527 1618 544 aa, chain + ## HITS:1 COG:Cj0027 KEGG:ns NR:ns ## COG: Cj0027 COG0504 # Protein_GI_number: 15791426 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Campylobacter jejuni # 1 541 1 540 543 746 66.0 0 MVETKYIFVTGGVLSSLGKGITSSSIATLLKHSGFEVGILKIDPYINVDPGTMSPLEHGE VFVTQDGAETDLDIGHYERFLNMDFSSKNNFTTGQVYLSVIDRERKGGYLGKTIQVIPHI VDEIKRRIKLAGEGKEILVVELGGTVGDIEGLPFLEAMREIKHEYGMERVISVHVTLIPL IKVAGELKTKPTQHSVQELRRIGITPQIIIARTEKELPKELKNKLSMSCDVDYDCVITAQ DAKSIYQMPLHFLKEGVLVPIARFLKLPEFTPNMQEWDSLVKRILAPQNEVSIAFVGKYL NLKESYKSLIEALVHAGANLDTKVNIQWIDSEELENNPEIIQQLKYVNGILVPGGFGERG IKGKMKAIWFARENKIPFLGICLGMQLAVLEFAHNVLGIKEADSMEFNPKTKEPIIYLIE NFIDQNGKQQIRTHTSPMGGTMRLGEYECQTKEGSKLQQAYKGQKTIKERHRHRYEVNPK YREALEKQGMVISGESNGLIEVVELKEHPWFVGVQFHPEFTSRLQAPNLVILEFIKQSLM YHAK >gi|197283043|gb|ABQU01000007.1| GENE 10 7517 - 7699 186 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310449|ref|ZP_04809604.1| ## NR: gi|242310449|ref|ZP_04809604.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 60 1 60 60 78 100.0 1e-13 MLNDILRFSPLNALEIKNILAGRFDGEKIKKLQDLPPPDSLNNLSKIAKKIAKAIQEKKE >gi|197283043|gb|ABQU01000007.1| GENE 11 7777 - 9102 1155 441 aa, chain + ## HITS:1 COG:Cj0028 KEGG:ns NR:ns ## COG: Cj0028 COG0608 # Protein_GI_number: 15791427 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Campylobacter jejuni # 4 426 84 509 523 310 39.0 3e-84 MISIVIPSRFDDGYGLSSAMIDRLDCEMIITVDNGISAIEAAEVCKQRGIELIITDHHTP QENLPDALICNPKLSPHFPESEICGACVAWYLCAAIKQEMGIEVQMAEFLDLLALAIISD VMPLRGMNRVLLKKGLEVLAQSKRAALVILKEHFKRYPLNSQLLGYYFVPLLNCAGRMEE AKIAYEFLIEKDYCKALEIFKKLQKLNQKRKNLQNKTFLEAKEYFETQEKFEELPFVLVC NEQWNEGVVGIVAAKLCEEYARPSIVLTHKEEYLKGSMRSLDIDCMKILEQCQGYLEAFG GHFGAAGLSLQKEKFLDFRDYLMQLKLPDKQKIIQSNILGSLPLKEVNLEIFRILQEFEP YGEQNSIPQFVTQAKIRAVQIFGTNHSQMVLEQEGVIRKALVFFENLKAYENQEMGFAYS LQWDKFARDVVLKVENYTPLI >gi|197283043|gb|ABQU01000007.1| GENE 12 9104 - 9373 255 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310451|ref|ZP_04809606.1| ## NR: gi|242310451|ref|ZP_04809606.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 89 1 89 89 171 100.0 2e-41 MKKFITFLWITSQFSFACMSDTDCNLGYQCLKNMYEWEGQCIKAVDEFGIQNFNEPRNNY GPKIESGCNFDTDCPLGFKCDSYSKECVR >gi|197283043|gb|ABQU01000007.1| GENE 13 9385 - 11817 2060 810 aa, chain - ## HITS:1 COG:Cj1373 KEGG:ns NR:ns ## COG: Cj1373 COG1033 # Protein_GI_number: 15792696 # Func_class: R General function prediction only # Function: Predicted exporters of the RND superfamily # Organism: Campylobacter jejuni # 7 808 2 805 823 651 47.0 0 MKINHPLAFIFKTILKYPKQILFCCILFFFISLFYAIKLPIDASSESLILENDKDFKIYE EILQDYQTKDFLILAFIPKDGNVFSNHSLQILQKITQDIKKIPQVQDTLSILNAPLLKST PNLELQEILKINPTLLSKQTDKNLAKNEILNHPFYTQNIISKNAKTAGILIYLKEDIKLK ELTQLKNTANTQEEKQNIQNLIHTHKQNSQIHNAQTIQALKSLKEQYITEGKVYLGGIML IASDMIDYVKSDLITYGTALSIILALMLWIFFRHIYFVALSFCVCLFSLVVSSGIFSFFG YQITIVSSNYVSLLLIISVSLIVHLIVSYLEFYEKFPKASQKNLVYAVMLNKASPSFFAV LTTIIGFLSLVFSKILPIIHLGIIMSIGVSVALIFTFMLFGAILVILPKPQKVKDLPKWH HIFLLKCANLATNKPKLIYAISFLCIVFSIYGIMNLKVENSFVNYFKDDSEIKQGLLTID QDLGGTIPLEIIINFQDKSSKDSSLSDFENEFEEEFNVLEQQDSYWFDSQKLRIAEKIHT YLANKEYIGSILSLHSLSMLVGSLGLGADDFTIAFLYKNSPQNLKNQLFTPYANIAKNQM RFVFRTFDSNPNLKRNLFIHEIQNDLTTLLQNESVTFKINGMMVLYNNLLQSLIASQVDT LSLVIGAIFLVFVLIFRSFKLSVIALLTNLIPLGAIFGFLGISGIPLDLMGITIAAICLG IGVDDVIHYIHRYKEELKSHSIKQAIIRSHSSIGNAMYYTTLIIVVGFCAMMTSNFIPTI YFGLLTTLVMLLMLAGSLILLPTFLITLKK >gi|197283043|gb|ABQU01000007.1| GENE 14 11807 - 12382 647 191 aa, chain - ## HITS:1 COG:Cj1372 KEGG:ns NR:ns ## COG: Cj1372 COG2854 # Protein_GI_number: 15792695 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, auxiliary component # Organism: Campylobacter jejuni # 1 185 1 185 189 169 51.0 3e-42 MKILFSFLLVATFGFALEFDKIDTTMEKNINQTIHILQTSNKSIESIAKEIFAMFDSIFD YHLMAQLSLSKKYKTLSPSQQKEFDVAFEKNLKRSFTDKLHLYKDETMKVLGGQKTKANR YNLKTSIILDGKIHYITFKFHEFNQDWKIYDVDILGISVIQTYRSQFADIISQEGFEKLL QKLESEIRFEN >gi|197283043|gb|ABQU01000007.1| GENE 15 12385 - 13083 707 232 aa, chain - ## HITS:1 COG:Cj1371 KEGG:ns NR:ns ## COG: Cj1371 COG2853 # Protein_GI_number: 15792694 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Surface lipoprotein # Organism: Campylobacter jejuni # 4 231 5 232 232 179 41.0 4e-45 MRNFILIMLIIFSQNLFGQEEFLEDFESEYTQSVIKDPFEKYNRFMTEVNWDIYDYVFDP ALQVYNAATPLGLRLGIYNFFDNLASPLRFLSHLFSFRFNDAINEFGRFTLNSTFGIGGI LDIATPNGLYSKRSDFGITFGRWGIDGEFYFVLPLIGPSNFRDILAMPLNALAYPTTYLE PFLLSAGVYTFKEFNYTARHKDTLDTFRRDSLNTYVLMKNSYEQHRNELIKE >gi|197283043|gb|ABQU01000007.1| GENE 16 13086 - 14954 1718 622 aa, chain - ## HITS:1 COG:jhp0328 KEGG:ns NR:ns ## COG: jhp0328 COG1154 # Protein_GI_number: 15611396 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Deoxyxylulose-5-phosphate synthase # Organism: Helicobacter pylori J99 # 12 616 6 610 618 741 59.0 0 MPLDKKYLEILKKDNLNDKDYLLLEELAQTLRKRILEVVSKNGGHLSSCLGAVELIIAMH CVFDSPNDPFIFDVSHQAYAHKLLTGRWDDFESLRQTNGISGYTKPQESKYDYFIAGHSS TSISLGVGVAKAFKLNQSQNLPVVLIGDGAMSAGLAYEALNELGDRKYPMVIILNDNEMS IAEPIGAISKYLSQAIAGKFIQKIKSKVSSAFNKMPNATYLAKRFEESLKLITPGLLFEE LGLEYIGPINGHNLKELINAFNLAKSMQKPIVVHTHTLKGKGYSLAEGHLEQWHGVSPFD MQKGLTQNNSAQQTPTQVFANTLLELAQQDSKIVGITAAMPSGTGLDLLIKHFPNRFWDV AIAEQHATTQASSLAKEGFKPFVAIYSTFLQRAFDQLVHDVGIMNTPVKFALDRAGIVGE DGETHQGVFDLAYLKIIPNFTLFAPRDNATLKEAIIFANHFNNGPCAFRYPRKTFLLQEN LIPATPFVYGKLEILQEAKSDILLLGYGNGVGRALQCAEILKQQSILCNIVDLRFLKPLD EESLQRLAQKHSKWFVFSDSAKIGGVGESLSAFAQNYHLSLEIHSFEFEDAFIPHGKTQE VEELLGLDSKTLANKISQIILG >gi|197283043|gb|ABQU01000007.1| GENE 17 14954 - 15814 1211 286 aa, chain - ## HITS:1 COG:jhp0327 KEGG:ns NR:ns ## COG: jhp0327 COG1317 # Protein_GI_number: 15611395 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway protein # Organism: Helicobacter pylori J99 # 3 284 2 255 258 140 36.0 3e-33 MNNINEHENIITEEHKARHDIKKYNFRNMEVNPKPAAQTTHKETIQDSIPKNNEIQEQEV IQEMQPQQETIQNQPQIDTPSLKLFETEVVDKILQKSDALAQSLQKLQEQFDKQEKEIDQ KVTNAKTEAKEQGYNEGYQKAKQELEAQINSQKELYALSIKRIDEHILESKNHILNLEKE LSAIALDIAKEVIISEVNNNSAKIATSLARNLLQNISENTQVTLKVFPGDLEELKESLKD LNNITLQADQAIAKGGVVILSNEGNIDGDIYLRFEAIKKSILESKF >gi|197283043|gb|ABQU01000007.1| GENE 18 15807 - 16841 1218 344 aa, chain - ## HITS:1 COG:HP0352 KEGG:ns NR:ns ## COG: HP0352 COG1536 # Protein_GI_number: 15644980 # Func_class: N Cell motility # Function: Flagellar motor switch protein # Organism: Helicobacter pylori 26695 # 3 344 2 343 343 447 71.0 1e-125 MPSISLSPRQQAQYDEFSMAEKIAILLVQLGDEITGEIFSHLDLDSITEISKYIAQNSGV DKTIAAAILEEFYAIFQSNQYISTGGFEYAKELLYRALGPEAAKRVLDKLAKSMQSSQNF AYLSRVRPQQLSDFIIHEHPQTIALILAHMDPTNAAETLSFFSDDLRAEIAIRMANLGDI SPNVVKRVSTVLENKLESLTSYKVEVGGIRAVAEVFNRLGQKAAKATIAYIEQIDDQLAA AIKEMMFTFEDIEKLDNNAIREILKVVDKKDLILALKASPEELKQKFMSNMSQRASEQFL EEMQFLGAVKVRDVESAQRRIVETVQSLSEQGVIQIGEQEDTIE >gi|197283043|gb|ABQU01000007.1| GENE 19 16844 - 18571 2124 575 aa, chain - ## HITS:1 COG:HP0351 KEGG:ns NR:ns ## COG: HP0351 COG1766 # Protein_GI_number: 15644979 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway lipoprotein # Organism: Helicobacter pylori 26695 # 1 565 1 563 567 590 57.0 1e-168 MDLKALFEQIRNLYKRLNKKQKIVILATIVAIVGFISALIVWNSINNKAGVLYPGYAVLF EGVSPEDGALIIQQLQQDKIPYKIPKDNTILIPQELVYEERMKLASNGIPKSSKVGFEIF DTQDFGATDFDQRIKYLRAIEGELARTIESLSPIQKATVHIAQPEKSVFVSEQTPPTASV VLAFKPAQTLTPKQISGIKNIVSSAIPNLTIENVEVVNEKGEPLSELDELGGARELAAAQ LRYKSNFEQSLEEKIINILAPITGGKEGVVAKVTAEFDFAQKESTQEYYDPNNVVRSEQN LEESREGAKPKEIGGVPGVVSNIGPVQGLENEDAKEKYEKSQTTTNYEVSKTISNIKGEF ATIRRLSAAVVVDGKYQKQLDNNGVEQLEYIALNQQEMEQITALVRQAIGYNQQRGDEVS VSNFQLNGQISGFKARTPLERFLETSQELLTPFMPLLKYVVVGIILFLFYKKVIVPFSER MLEAKADEEEEIESLLKIEDEEEENTDKLNEVKRRIEDQLGFSNNNEDEVKYSVLLEKIK ELAQEKPTDLANLFQTLVHDELGIDNISSPSKGGR >gi|197283043|gb|ABQU01000007.1| GENE 20 18582 - 19685 1173 367 aa, chain - ## HITS:1 COG:Cj0317 KEGG:ns NR:ns ## COG: Cj0317 COG0079 # Protein_GI_number: 15791685 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Campylobacter jejuni # 1 364 1 363 364 397 56.0 1e-110 MTFNSILDTIQTYEAGKPIELVVREFGIAPQDIVKLASNENPLGASKKAIEAITNNARNA HLYPDDSMFALKEGLSQHFNVSQQEIIIGSGSDQIIEFCIHAKAHSNSKVLMAKITFAMY EIYSKTTGATILKTQSQSHNLDEFLEIYKAHKPSVIFLCIPNNPLGDCLDKAEVFKFLKE INNDTLVIIDGAYQEYAKAKDSKKAICPKELINTFPNTIYLGTFSKAYGLGGMRIGYGIA KPNIIQALSKLRPPFNITTPSLAAAIEALKDQEHIQKTTQNNLEQMAYYESFAKEKGINY IPSYANFITYLFETPLNSSKIADYLLKKGMIIRNLASYGLNAIRITIGTKNQNEKFFTLL NEFLEQK >gi|197283043|gb|ABQU01000007.1| GENE 21 19753 - 21186 1024 477 aa, chain - ## HITS:1 COG:no KEGG:WS1918 NR:ns ## KEGG: WS1918 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 477 1 480 480 313 38.0 9e-84 MTGFLIAFNAKTRQGKIEQAHNKRHYEFDLKVWQGRLDELAPNIEVEFELSDTKEVLFVK PKSIFANENFTIQQTKSIKDCIYDYFGGVENLIKRYQKAIQSNKELDFLKIKRFLFTAYN DLFELDSTIPNLALSNLKSELASLDNAFESFSKKASYPPQYSYEKIFLSKQIQYTKNQEL IQTTHSIIKSASIQQASMGKTLKEMEERFANRRDLNSPDYLQTQTSLKSFRKRYVDLLHY LSSQKEKLAKITKAGEQFEEQFYEPFLKSYLPFSKELKNDFIKILNSKAYELDCLLWQRA KQSLSVRRFFIEAGITGTYSSKTFLKYFLKSLDRSKIRQETKSLFDLLKYLETFSKKNIL LIQKSVDDSKRYKEYLKNFDNDLNITTSNHPKEILNSPKNTHYDVIVMEWEIDDMCILDF IQSYQKIFNTKEKTYFCAIIPKNLDNSLIQEAKKSQIQYLIYRNNTEQFIDMMRMIL >gi|197283043|gb|ABQU01000007.1| GENE 22 21264 - 22406 911 380 aa, chain - ## HITS:1 COG:Cj1127c KEGG:ns NR:ns ## COG: Cj1127c COG0438 # Protein_GI_number: 15792452 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Campylobacter jejuni # 3 305 4 296 365 206 41.0 5e-53 MSLVILIYSLGPGGAERITSLLLESLSKKYKITLVLLEDICHYEIPNNVQKIVLGKNNLK ESGLKKLLKLPILAYQYSKIIHNATHSFSLMTRPNYINILASFLAKKPKIFISERSYPSK QYGYENLQSKINRFLIQTLYKKAYKISANSPQNLQDLIDNFKIPPQKLTLLPNLFCLTKI HTLSQENTPLKQKILEKKREGKIIFISIGRLDKGKNHHLLIESFKQLNTPNIHLFIIGQG ELENTLNTQIKDANLEDTITLLGATTNPYAPLSCANFFLFASNHEGFPNVLVESLSLRIP IITTDCAPDMILECHQSLENFKIGKCGITTPLNNAQIMAEAIEWALANPNYFSKENLLHQ AQKFDISHQLPLYQKWLELP >gi|197283043|gb|ABQU01000007.1| GENE 23 22397 - 23515 856 372 aa, chain - ## HITS:1 COG:SMb21230 KEGG:ns NR:ns ## COG: SMb21230 COG0438 # Protein_GI_number: 16264482 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Sinorhizobium meliloti # 73 368 71 358 360 91 25.0 3e-18 MKKIKILLVIRSLFIGGAERQWVLLAKGLAQIQEVELLLCTFYQGGQLENEIAGIPHICL HKKGKGDFLFLWRYRQIIKSFNPSCIYAFMPDSNLFSLFASASLKIPVIWGFRSSNIEIK NLSLFSKLYFYTQKLFSPKVAAIICNSNHAIDFYQNMGYCMQKAKVIYNGIDTQYFTPQD SSHLKKTLDILQDSFVFGISARMDKVKDYPLLAKGAREILPKHPKVVFIAIGKINPEILQ ECQNILGEYQKRFLFLGIQKEVEQFYSLFDCIISTSYTESFSNSIAEAMACECIPLVSDA GESKVIANFGQSYSYIFPPKNLQSFCAGLESVLNLEKDKLQTAKKNARLHILNNFSVEKM VKDTLEVLKKCL >gi|197283043|gb|ABQU01000007.1| GENE 24 23512 - 24441 950 309 aa, chain - ## HITS:1 COG:Cj1128c KEGG:ns NR:ns ## COG: Cj1128c COG0463 # Protein_GI_number: 15792453 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Campylobacter jejuni # 8 302 1 300 309 154 36.0 2e-37 MENADTTLPKVSVILTTFNREYFFTEAIESILEQDYPNLEIIISDDGSSDNTFAFACEYA KDHPYIKVVQNTHSKGSAGNRNNGLDYASGDLVLLLDDDDLLFKEAISQMVEIYLQFNKH YGIIMANCTRSDDGFLSGKGINETREISFQEVLCGKLQGEFITLFERRLLGTRRFNENLK RGNMGLLWLRMHKQSPCFYLHRPLKFYRIHAESLTQNMKYQPLEMVKNYEQDILLFYKER KESCPKHLANLCVTAALLYKQGGDNKHALKKIFQSFLIYPNFKALGALFYLFLPKSFIPK LNVRQRVEK >gi|197283043|gb|ABQU01000007.1| GENE 25 24463 - 26172 217 569 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 348 562 3 216 311 88 30 9e-17 MLKQLKAILLHKDRIYIYFLLFFSLIVSLIELVGISAIAPFISVASDFSLIESKPYYAYF YHLFNFSSPYDFVVFFGIALLFFYLFRSIINLIYQHFLARFTFGRYHLIVGRLFVNYLGM NYQDFITKNTSYLTKTITTEAHNFTILLAAILFMTSEVFVVLLIYGTLLFVNFKITLGLT LMLGIFGFLMSKIVSQKIKKQGKQKEFYQKSFFQSIANSFGNYKIIKLQSNDESILNNFT QSSWGYSLANIKNQTFFHIPRLLLEAIGFCMMIAVVLYLFITDGKNMNAYLPLLSMYVLA LYRLLPSINRILDSYNKILFNFRSLEIIYKDIQMQTKNLGEDKINFEDKITLHNICFGYT KDKKVLENVNLTIKKGAKVAFVGESGSGKSTLVDIIISLLEPCSGEIYIDTTKLSDKNLK SWRQKIGYIPQNVYLFDGNVADNVVFGRDFDEKRIIECLKLANIYEFLETKEGIYTQVGD SGISLSGGQKQRIAIARALYGKPEILVLDEATSALDNKTEQKIMDEIYQISSNKTLLIIA HRLSTIQKCDIIYQITKGIPKEIKYDDLH >gi|197283043|gb|ABQU01000007.1| GENE 26 26332 - 27585 1457 417 aa, chain + ## HITS:1 COG:PM1003 KEGG:ns NR:ns ## COG: PM1003 COG0677 # Protein_GI_number: 15602868 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetyl-D-mannosaminuronate dehydrogenase # Organism: Pasteurella multocida # 4 417 8 424 424 516 59.0 1e-146 MKTLAVIGLGYVGLPLAVEFGKKYNVIGFDIFKQRIDELKKGYDRTLEVEKDELQSAKNL NFTTNLEDLRAAQIYIVTVPTPIDQYNKPDLTPLLKASSSVGKVLKKGDIVIYESTVYPG CTEEDCVPILERESGLKFNVDFFCGYSPERINPGDKQHRLPSIKKVTSGSTPQIADEVNA LYASIITAGTHKASSIKVAEAAKVIENSQRDINIAFVNELALIFDKMGIDTLDVLEAAGT KWNFLPFRPGLVGGHCISVDPYYLTHKAESLGYHSQVILAGRHINDNMGVVVANKVIKLM IKNAHQIVGSKVAILGITFKENCPDIRNSRVVDIVKELKDFDCCVEIFDPWADKEEVKHE YGLELKDSKDFKLQEYAAVIVAVAHEEFKGLDFSHKGKTIVYDLKGILPKEQVSGRL >gi|197283043|gb|ABQU01000007.1| GENE 27 28022 - 29449 1173 475 aa, chain + ## HITS:1 COG:HP0658 KEGG:ns NR:ns ## COG: HP0658 COG0064 # Protein_GI_number: 15645282 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Helicobacter pylori 26695 # 1 474 1 474 475 698 72.0 0 MSAFETIIGLEVHVQLNTKTKIFCSCATSFGAEPNTNVCPTCLGLPGALPVLNREVVKKA IAFGTAINAQINQNSIFARKNYFYPDLPKAYQISQFEIPIVGRGNIEIEVNGEKKTIGVT RAHMEEDAGKNIHESEYSKVDLNRACTPLLEIVSEPDMRSSDEAIAYLKKLHSIVRFLGI SDANMQEGSFRCDANVSIRPKGDSKLYTRVEIKNLNSFKFIQKAIEYEVERQIEAWEDGK YEMEVVQETRLFDTTKGVTRSMRGKEEAADYRYFPDPDLLPVYIDESLMNEGRQIPEMPD EKRERYVREFGIKPSDASVLTSELEMARYFESMLESGASAKGAVTWLTTELLGRLKGENT LQTCGVDSITLATLVKRIDEGKISGKSAKEILDVLVEQKGGDVDSLIDSMGLAQVNDDGA ILSVIESVLSANADKVAEYKSGKDKLFGFFVGQVMKGSKGANPARVNELLKEKLQ >gi|197283043|gb|ABQU01000007.1| GENE 28 30281 - 31699 1686 472 aa, chain + ## HITS:1 COG:no KEGG:WS1780 NR:ns ## KEGG: WS1780 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 472 1 441 441 331 47.0 3e-89 MKFLKLSLAASVALGALSTASFAQPLEEAIKGIDVSGYLRYRYTDDRYDSAAGNTGKSAN HQWRAVADFKTPVINNIALNFGVWYDNQNNVNHGKGQIATGSTQTSGFLGDGLGSGSDGE FGVREFYATITPDSTATTIKIGKQLLDTPVTNAYDGDRGTGILALNSDIPNLTLAAAAFD SWAINEYNFAASGINAAGVNGVGYNSSFSNENSVDKPLYALAGIYGVDTNYGRFGGQLWG FYIDDAVDALVFGELSWQGSLLRAKLQYTYAALNNDADSVFATLYGNGNGNTLANPKANI SESNDMGVIEVGADFRNDFQLPLNITLGYMMNFADGTAVALEDEGSNVSRKGKIWWQNAG TGISTSALRGWGVQGFGTEQDVNVFYAGVDYSFLDERLNVGLEFAWGENDISRNGARVEK VEFTEITPTISWKHSKQLTLSTFYAFLNNSYDTANTPDQDRNRFRVEAKYSF >gi|197283043|gb|ABQU01000007.1| GENE 29 31997 - 32083 73 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIGILCAAFALIAFFGAFIMILKMIEKA >gi|197283043|gb|ABQU01000007.1| GENE 30 32155 - 33066 628 303 aa, chain - ## HITS:1 COG:Cj0937 KEGG:ns NR:ns ## COG: Cj0937 COG0679 # Protein_GI_number: 15792266 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Campylobacter jejuni # 1 301 1 302 303 295 64.0 5e-80 MFIFNPLFTIFILLLGGYMAKKIGVLKQKQSKMFLDFAILFALPCLIFDKTYHLNFDFTL VTLILIGFLSCMLSAGFAVMLGRFLQFSKATLVSMFLLAGFGNTLFIGIPILSGIYGESF ISEAIFYDALATAIPISIIGPFILSLASNQPTNFLSNLKRILLFPPFIALILGFVCKLIV LPDFIFQPIIIFGNSATAVALFSIGLGLGFSAIKASYKGTIIVVLSKTLLAPLIFVVILS LLDIAFTPRVIAAILESSMPTMTLAGAMIMKAKLDSNLAVSSIAFGILFSFVSIPLLCYL LPI >gi|197283043|gb|ABQU01000007.1| GENE 31 33131 - 33202 68 23 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRSNRFKKRKNKGGVRESLSRII >gi|197283043|gb|ABQU01000007.1| GENE 32 33195 - 34604 1871 469 aa, chain - ## HITS:1 COG:jhp0405 KEGG:ns NR:ns ## COG: jhp0405 COG0265 # Protein_GI_number: 15611473 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Helicobacter pylori J99 # 8 466 10 475 476 496 57.0 1e-140 MKIKTLLLGTLLVSNVFAFEVSELPNITARETPDISQNKIYSFYDSIKEAKKGVVNISTQ KKIKAANIQGHPLLNDPFFKQFFGDAFGAIIPKDRIERSLGSGVIISSDGYIVTNNHVVE GADKIIVALPDTNKEYEAKIIGRDEKSDLAIIKIKAKNLPFLKFASSDDLQVGDVVFAIG NPFGVGESVTQGIISALNKSGIGINDYENFIQTDASINPGNSGGALVDSRGGLIGINTAI LSRTGGNHGIGFAIPSSMVKKISKALIEDGEIERGYLGVSIQDISGDLKEVYKNQNGAVV ISIEKDSPAQKGGLKVWDLITKVNGKAIKSAAELKNYIGTFSPKDKVTLTILRDKKEQTL TLSLTKIPDSNTNGEKAGGIDGLEVSTLTPDIKNRFGIPNNIQGVFITQVKPNSKAEEIG FSEGDIIVQIESFAILDIQSFNQAINRYKGQPKRMLINRGGRILSVVIK >gi|197283043|gb|ABQU01000007.1| GENE 33 34878 - 36896 2130 672 aa, chain + ## HITS:1 COG:Cj0755 KEGG:ns NR:ns ## COG: Cj0755 COG4771 # Protein_GI_number: 15792094 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferrienterochelin and colicins # Organism: Campylobacter jejuni # 25 672 25 696 696 283 32.0 7e-76 MNQWKVWWILPFFVGVSYGAEKYYLQQSVVSASGIEHDLNFAPGSVSVITQEDLSSRSIK DLGEALMGVPGVDVTMGMSGAYTFSIRGFGEGQTLVLVDGKRINEINGFGYANEGENNGY IPPISMIERIEVIRGGASTLYGSDAIGGVVNIITKKIPSQFGGSFTLETKQQQHYNLYGS LRQVSGFVAIPLVENKLSLALRGRYTQKDPYGLKYPEPRNPNMPSSIYAHGSGGDYSLGN IGARIAYKLDEQNSFYIDGEHYRQNTRIQHTPENHTRGDKKMERNSIVLNHDGSYNFGNL NTYFQMQNTHHKNASSANKANLYVVESKAITPINFNAFGSIVLTSGVQYQYDNYISGLEK YEQNTIAPYLDAEYFITDDLSLTLGARYSYSDLFDGIFIPRAYLVYQPLDWITLKGGVSK GYRAPQARLLGSGIYSSSADYDYYGNPDASPEESTNYEIGVNFDMKYANFSITGFLIDYK NELYSDEYNSGEILPNGEVCSAGTSCFIYTNRGKNQARGIEIGANSASFNGFSIEATYTY LEKFYKGTYQDGTRELNPFGGERIEDIPRHIAMLKLNYKKGKFSSYLRGNGRFDTLSNIS YMGKYKDFYTFDLGLSYKMTKFSSISFAVNNLFDQNYFKPFGYPSGRRTMYDNEYQTFNE RRNFWISYKMDF >gi|197283043|gb|ABQU01000007.1| GENE 34 36924 - 37625 729 233 aa, chain + ## HITS:1 COG:aq_1609 KEGG:ns NR:ns ## COG: aq_1609 COG0725 # Protein_GI_number: 15606725 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, periplasmic component # Organism: Aquifex aeolicus # 12 229 10 236 240 59 23.0 6e-09 MKKIILMAILSVSVAFSDVVIGIGGGYKKAMDSIVESYNKTNPKHKVIRRYGNMKFLTTQ IQGKEIDALFGLEQMIKRVGMESNEKVTIGYNKIVLVGARGVELDSFEDLKKAKSIVILS PQKGMFGKGSETFLKNLEFYEEIKPKIVVSEDMHLILEDLIGKKAQVAILNTKYYYDNQS KLGNMLEIPSAFYQPPKVQMAILRESEGLREFIEYLKSEEARKVLRIYGISAE >gi|197283043|gb|ABQU01000007.1| GENE 35 37648 - 38253 403 201 aa, chain - ## HITS:1 COG:Cj1113 KEGG:ns NR:ns ## COG: Cj1113 COG2833 # Protein_GI_number: 15792438 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 1 191 79 261 265 160 46.0 1e-39 MHSIAHIEFSAIDLALDCAYRFRNLPLEYYQNWVEVAFQEVHHFLALEKLLNLLGFQYGD FGVHTLLFDSMKNCNVLLDRIALIPRGMEAIGLDVNPFLCAKVQASNHTIKMELLEVLSV ILQEEISHVSKGNFWFHYLCDKQNIPHTNRAKTYLEILKKYHFSFPKANSSLNTQARIQA GFTKEELEMLQDSAFLSKNPK >gi|197283043|gb|ABQU01000007.1| GENE 36 38492 - 39118 656 208 aa, chain - ## HITS:1 COG:Cj1111c KEGG:ns NR:ns ## COG: Cj1111c COG2095 # Protein_GI_number: 15792436 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Multiple antibiotic transporter # Organism: Campylobacter jejuni # 5 207 1 206 208 196 58.0 4e-50 MFGELQSQLYSILLAAIAILAVLNPFGNLPQFIAMTEELETSLRQSLFRNILYTSFVIVI IFLLIGPFIMRYLFNVDLNDLRIAGGLLLILVSLKNLLFASHKAATHYETTDKSELLSQS IVPMAFPMLVGPGTLSTVIVISEENGEILAICAVIAAFIFMLILFHFAATIERVLGKLVL HVLSRIALVFIMAMGVKMMIIGLKATFL >gi|197283043|gb|ABQU01000007.1| GENE 37 39163 - 39888 645 241 aa, chain - ## HITS:1 COG:Cj1669c KEGG:ns NR:ns ## COG: Cj1669c COG1793 # Protein_GI_number: 15792973 # Func_class: L Replication, recombination and repair # Function: ATP-dependent DNA ligase # Organism: Campylobacter jejuni # 1 236 39 278 282 260 51.0 2e-69 MSEKLDGIRGIWNGKTLNTRNNYPINPPKVWLKNFPPFSLDGELWLDYQSFEKISSIVRN SNSSLKEWQNITYNVFDAPNICQDCTLLERLDKLQKYLDKNPSPSIKIIPQIQIQNKQHL QSYFQEILNQNGEGIIIRKNDTPYGDSSNTYKYKPYMDSECEVVGYTQGKGKFEGMLGAI ICQAKIQGVQKTFKIGSGFSTKERQSPPPLHSIITYKYNGLTKNNLPRFPTFLHIRYKEF Q >gi|197283043|gb|ABQU01000007.1| GENE 38 40005 - 41360 1544 451 aa, chain - ## HITS:1 COG:HP0380 KEGG:ns NR:ns ## COG: HP0380 COG0334 # Protein_GI_number: 15645008 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Helicobacter pylori 26695 # 3 450 2 448 448 650 70.0 0 MSYTQSVIQKVQKLYPDQVEFHQAVKEVLESIEPALQKDKRYEKYKVLERIVIPERQINF RVTWEDDKGEIQVNRGYRIEFSSLLGPYKGGLRFHPSVTEGIIKFLGFEQIFKNSLTGLA MGGGKGGSDFDPKGKSDREVMRFCQAFMNELYRHIGAHTDVPAGDIGVGGREIGYLFGQY KKLTNRYDGVLTGKSLLWGGSLVRTEATGYGSVYFAQEMLKHSDFGSLEGKTCLVSGSGN VAIYTIEKLQQLGAKPVTISDSKGIIYDESGIDLALLKEIKEVRRESLESYAKEKPSAKY TSTRDYPSDHNPLWAIPAFAAFPSATQNEINAKDAENLLKNGCKCVSEGANMPSTIEAVH KFLDAKICYGPGKAANAGGVATSGLEMSQNASMTAWSFEEVDSKLHKIMQNIYANASQTA KEFGEPTNLVLGANIAGFRKVANAMIEQGLV >gi|197283043|gb|ABQU01000007.1| GENE 39 41631 - 43133 1840 500 aa, chain + ## HITS:1 COG:XF2759 KEGG:ns NR:ns ## COG: XF2759 COG2931 # Protein_GI_number: 15839348 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: RTX toxins and related Ca2+-binding proteins # Organism: Xylella fastidiosa 9a5c # 189 282 174 278 1296 72 41.0 2e-12 MQASMSFSSLQASYTTTHWSALGEEIKNNQANSVPQISEEEGNSQKTSNILSSTEILNNK IGDFQKQIINQALNKISEIQDEMIKVWEEVFGMSSENSSSTNTSISGSIESLLNGNFSRP SYNVGSGISITQGFYQSLELSIQGTIVGKDGVSRKLDLSINVSQSFVQNLQINSQNTNTN NTNSNKVIDPLVIDYAGNGTELSDTKMSFDLDSDGKEDQISTLKEGSGFLALDKNNDGKI NNGNELFGTQSGDGFKDLSAYDLNQDGKIDKEDPIYDKLRIWTPNEKGEGELVGLGEKGI GVIYLDAKESQELMKGEEGDLLGIKQKTSNFIREDGSAGEIHHIDLVAGDNSTQNTSNPT LQEGLQLAANRAYMQNLSISFSFSQSSGNILASNNASSGFSLSAFSFSASQYSFSLSSLE NANNGVSKELSTMWKVLQETFVGFEKEEESPMTLKTLLENFSESFEDLNRFVFGEMGFDK EENPFKNTLSNIDIQRLLAA >gi|197283043|gb|ABQU01000007.1| GENE 40 43284 - 44300 1151 338 aa, chain - ## HITS:1 COG:aq_1019 KEGG:ns NR:ns ## COG: aq_1019 COG0309 # Protein_GI_number: 15606316 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Aquifex aeolicus # 8 338 4 332 332 336 48.0 4e-92 MAKKDSIITLSHGSGGIESQKLITELFYHYLEGCVIGASEDAGVGEIKDKCAISTDGYTI SPLFFPGGDIGKLSVCGSCNDVAMMGAKPKYLTASFMIEEGFLIEDLKKIIESFSQTLKE SDTKLISGDTKVLPKGTLDKVFITTTAIGEFLYPHLQMSAFKIPQDSCILVSGEIGNHGA VIYSKREEISLHSTLKSDCALLYPMLEELFKNNIQIYALRDATRGGIASVLNEWANTSNI GIEIQEESLPIRDEVRGICELLGFEAYHLANEGMCVLAISKEDSTKALDILKQSKLGKNA AIIGHTTATNSKKVVLKTTYGAKRFLDYPSGELLPRIC >gi|197283043|gb|ABQU01000007.1| GENE 41 44421 - 44513 82 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPFLLRIGLAMTECIATFSVGSYPTFSPLP >gi|197283043|gb|ABQU01000007.1| GENE 42 44849 - 44989 76 46 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQEINSKVANIKKAFGFINGNLAMFIVAKSPKLMGFFKMSRRIFLC >gi|197283043|gb|ABQU01000007.1| GENE 43 44958 - 46073 1300 371 aa, chain - ## HITS:1 COG:Cj1606c KEGG:ns NR:ns ## COG: Cj1606c COG0489 # Protein_GI_number: 15792911 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Campylobacter jejuni # 3 370 2 367 368 451 60.0 1e-126 MNQEQLVNLLKEIIYPNFEKDIVTFGFVKEMLIHENAVSIRVEIPSASPEVAEKLRTQIT QKLNTQGITKINLDIKQPKPQEQTQKPQSTKNLAPQIKNFVMVSSGKGGVGKSTTSVNLA IALAQQGKKVGLLDADIYGPNIPRMLGLQKDKPEVDQKLKKLIPLQAYGIEMISMGVLYD EGQSLIWRGPMIIRAIEQMLSDVLWDNLDVMVIDMPPGTGDAQLTLAQSVPVTAGIAVST PQKVALDDGARALDMFSKLKIPVAGIIENMSGFICPDCGKEYDIFGKGTTQEVAKAYGTK TLAQIPIEPSVREAGDSGKPIVYFHPESKSAKEYLKAAKELWDFIEEVNDKKLADNSEIQ PINTGKSACSS >gi|197283043|gb|ABQU01000007.1| GENE 44 46083 - 47414 1427 443 aa, chain - ## HITS:1 COG:slr0118 KEGG:ns NR:ns ## COG: slr0118 COG0422 # Protein_GI_number: 16331858 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis protein ThiC # Organism: Synechocystis # 1 441 1 444 459 631 65.0 0 MRTKWVEARKNDKIKTQLHYAKKGIITQEMEYVANLEYLEPEIVRKEIAKGRLILPSNVN HTNLEPMGIGIATRTKINSNIGSSALASSIEEEVQKTLISIKYGADTIMDLSTGGDLDSI REAVIKNSSVPIGTVPIYQILHDVKNDINALTIDKMLEVMERQAKQGVSYFTIHCGFLLE HMPLLAKRKMGVVSRGGSLMASWMMHYHKQNPFYEAFDDILDICQRYDVSLSLGDSLRPG CLADSSDMAQLSELKVLGELTKRAWEKDVQVMVEGPGHVPMNEIERNVELQKELCFEAPF YVLGPLVTDIAAGYDHIASAIGAAIAAWKGVAMLCYVTPKEHLGLPNAKDVREGIIAYKI AAHSADIARGRINARLRDDAMSNARYNFDWNRQFELALDPERAKEYHDESLPQEVFKEAK FCSMCGPKFCSYKISQEIIQQHS >gi|197283043|gb|ABQU01000007.1| GENE 45 47629 - 49038 1740 469 aa, chain - ## HITS:1 COG:no KEGG:WS1780 NR:ns ## KEGG: WS1780 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 469 1 441 441 328 43.0 4e-88 MKITKLSLIACVALASLSTASFAQPLEEAIKGIDVSGMLRYRYTDNRYDNKGFNKQERTR GDANHQWRAEALFKTPVINNISMNLGIGYHNAQQNVNHGKGILDNNDNYTNVFAGNGLGS GSDSWFGVREFNMVITPDSTNTTIKAGKMIMQTPINDTLDDRATGIFVTNSDLNHWTFAL GAFDAWSIDDYQTGYTLTPDNESFAKPFYTAGAMSNYDTSIGNFSSQLWLFNATDMIDFA GFGELAWQNSMFHLKGQYAFSKLNSDANSPWTSVYKGQKVKEGNDLYTLEAGVRFHDYNI PVAAKIGYWGNTQDGYAVSLDDEGSFQKVGQIWFENGATGVSISMLPTNGQNMPRGFESN ELSMFYANINYDILENLNIGIDYVNGTNKIARGQGAARYSGDIDFQEINPYIVWQYTKSL RIFAHYSILTTDATRQIALGNADTTAWNDANNTDSEDRNRLRVEVKYTF >gi|197283043|gb|ABQU01000007.1| GENE 46 49143 - 49262 83 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLENIILGAIFALAIGYFIYKIFFTKNSCGCNKCNCDKK >gi|197283043|gb|ABQU01000007.1| GENE 47 49478 - 50107 691 209 aa, chain + ## HITS:1 COG:no KEGG:WS0575 NR:ns ## KEGG: WS0575 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 3 189 2 193 217 162 54.0 7e-39 MKKFLKKISDPKVVGAFSKSGLGLAAILVMVGCDNTSQNTNNGGGLEQATKNGATVTIEQ QQDGSYKILEETPSSTTRVILKEANGNERILTQEEIDKIIAEESKKIDEGTSQLTNPTGG GLSLGETILASAAGAILGSWIGSKLFNNQNYQAQQRTSYKTPQAYERSQNSFNKTATSAT SNAGRSGFYSPNNTSTTQNRSSTSSSFGG >gi|197283043|gb|ABQU01000007.1| GENE 48 50110 - 51139 1039 343 aa, chain + ## HITS:1 COG:HP0233 KEGG:ns NR:ns ## COG: HP0233 COG0754 # Protein_GI_number: 15644861 # Func_class: E Amino acid transport and metabolism # Function: Glutathionylspermidine synthase # Organism: Helicobacter pylori 26695 # 1 343 1 344 390 444 63.0 1e-124 MQIIKANPLNNEDLENLGLSWHTDVDNTPYVIDEIIEVSEEEAQKYYDAANELYDMYVEA GQYVIDNDLFFELGIPFNLVEAIQMSWEEEVHWHLYGRFDLAGGLDGAPIKLLEFNADTP TMVYESAIIQWALLKKNGFNESLQFNNLYEALGDNFKRIITLGEDTSRFDEIYEGWKILF SSIQGSQEEERTVRLLEVIAKEVGFGTQFCYAHEAHLDENAGLSFGGENYEFWFKLIPWE SIAIDEPDLANLMTAMIRNKNTIFLNPAYTLMFQSKRMLKILWDLFPNHPLLLETSYEPL SKKQVKKHAFGREGESVSILDSNGKALVQNSGNYGNYPEIYQE Prediction of potential genes in microbial genomes Time: Tue May 24 02:00:29 2011 Seq name: gi|197283042|gb|ABQU01000008.1| Helicobacter pullorum MIT 98-5489 cont2.8, whole genome shotgun sequence Length of sequence - 18925 bp Number of predicted genes - 21, with homology - 21 Number of transcription units - 10, operones - 5 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 4 - 138 110 ## COG0754 Glutathionylspermidine synthase 2 1 Op 2 . + CDS 156 - 1475 1194 ## COG0001 Glutamate-1-semialdehyde aminotransferase 3 1 Op 3 . + CDS 1465 - 1758 293 ## Abu_1008 hypothetical protein 4 1 Op 4 . + CDS 1742 - 2272 393 ## gi|242310492|ref|ZP_04809647.1| predicted protein 5 2 Op 1 . - CDS 2275 - 3660 1227 ## COG0486 Predicted GTPase 6 2 Op 2 . - CDS 3644 - 4345 691 ## NIS_0882 hypothetical protein 7 2 Op 3 . - CDS 4342 - 5958 1292 ## COG0706 Preprotein translocase subunit YidC 8 2 Op 4 . - CDS 5948 - 6172 61 ## gi|242310496|ref|ZP_04809651.1| conserved hypothetical protein - Prom 6260 - 6319 8.8 - Term 6205 - 6240 -0.3 9 3 Op 1 . - CDS 6321 - 6650 62 ## COG0594 RNase P protein component 10 3 Op 2 . - CDS 6673 - 6807 231 ## PROTEIN SUPPORTED gi|224418476|ref|ZP_03656482.1| 50S ribosomal protein L34 - Prom 6831 - 6890 7.7 11 4 Tu 1 . - CDS 6892 - 8313 1828 ## COG0439 Biotin carboxylase - Prom 8379 - 8438 7.0 + Prom 8309 - 8368 15.3 12 5 Tu 1 . + CDS 8458 - 9231 718 ## COG1968 Uncharacterized bacitracin resistance protein 13 6 Tu 1 . - CDS 9232 - 11340 2085 ## COG0210 Superfamily I DNA and RNA helicases - Prom 11425 - 11484 16.6 + Prom 11384 - 11443 8.2 14 7 Tu 1 . + CDS 11492 - 12427 842 ## COG0583 Transcriptional regulator - Term 12215 - 12251 -0.1 15 8 Op 1 . - CDS 12424 - 13095 178 ## COG1451 Predicted metal-dependent hydrolase 16 8 Op 2 . - CDS 13095 - 14315 1085 ## COG5659 FOG: Transposase 17 8 Op 3 . - CDS 14306 - 14893 359 ## COG1573 Uracil-DNA glycosylase - Prom 14977 - 15036 12.7 + Prom 14940 - 14999 7.8 18 9 Tu 1 . + CDS 15117 - 16520 1595 ## WS1237 hypothetical protein + Term 16542 - 16594 0.5 - Term 16434 - 16491 2.3 19 10 Op 1 . - CDS 16627 - 17205 604 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 20 10 Op 2 . - CDS 17177 - 18106 1077 ## COG0462 Phosphoribosylpyrophosphate synthetase 21 10 Op 3 . - CDS 18178 - 18732 552 ## COG3963 Phospholipid N-methyltransferase - Prom 18753 - 18812 10.7 Predicted protein(s) >gi|197283042|gb|ABQU01000008.1| GENE 1 4 - 138 110 44 aa, chain + ## HITS:1 COG:jhp0218 KEGG:ns NR:ns ## COG: jhp0218 COG0754 # Protein_GI_number: 15611288 # Func_class: E Amino acid transport and metabolism # Function: Glutathionylspermidine synthase # Organism: Helicobacter pylori J99 # 2 44 348 390 390 75 76.0 3e-14 MLNSHNGNFYQANVFYAYEACALGFRKGGEILDNMSKFVSHKIR >gi|197283042|gb|ABQU01000008.1| GENE 2 156 - 1475 1194 439 aa, chain + ## HITS:1 COG:HP0306 KEGG:ns NR:ns ## COG: HP0306 COG0001 # Protein_GI_number: 15644934 # Func_class: H Coenzyme transport and metabolism # Function: Glutamate-1-semialdehyde aminotransferase # Organism: Helicobacter pylori 26695 # 4 434 1 426 430 607 69.0 1e-173 MKTLENINSINDFNEAKQVIPGGVNSPVRAFKSVGGTPPFISHAEGAYLFDEDGNSYIDF VQSWGPLIFGHCDKDIESVVIETIQKGLSFGAPTILETALAKEVISIYEGIDKIRFVSSG TEATMSAIRLARAYTKRDDIIKFEGCYHGHSDSLLVSAGSGLATFGSPSSPGVPEDFTKH TLVARYNDIQSVELCIQASKQKGKGVACVIIEPIAGNMGLVPAQKEFLESLEALCKKEGI ILILDEVMSGFRASLNGSQSFYGISGDLVTFGKVIGGGMPVGAFGGKAEIMNLLSPQGNV YQAGTLSGNPVAMSAGLVALKKLKANPKIYKQLESLALKLTQGLERIAKEFQIPIQTCVR GSMFGFFFNQKPVENFEDALKSDTQMFARFHQGMLNKGVYFAASQFETGFICDAMNETMI DEVLNKAKEVFLEISAYGK >gi|197283042|gb|ABQU01000008.1| GENE 3 1465 - 1758 293 97 aa, chain + ## HITS:1 COG:no KEGG:Abu_1008 NR:ns ## KEGG: Abu_1008 # Name: not_defined # Def: hypothetical protein # Organism: A.butzleri # Pathway: not_defined # 2 97 5 102 102 113 61.0 2e-24 MENKEKPKYQDAVLAYSNATLGISIVVAVLIGVGIGYGLEKLFGYRWLFWLGVVWGILAA ILNIYKAYKRQKKEFDELSKDPKYRYQKAEKWDDDED >gi|197283042|gb|ABQU01000008.1| GENE 4 1742 - 2272 393 176 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310492|ref|ZP_04809647.1| ## NR: gi|242310492|ref|ZP_04809647.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 176 1 176 176 265 100.0 1e-69 MMMRINILSFILFVILAICGVLSYIFWGSLVTLNFVFAYVSFVIIVGMAFIMQRKKIMRL ISQASQEELESLKNLYQSKEEKEEEFWGENEDKDDEKFVKECISKKKKFWQSFNKESGKV GFKMFFMPLRLLTYAVFIVLFLIFLKKELFDFVGFFGGLIVGNFALVMALFLAKVK >gi|197283042|gb|ABQU01000008.1| GENE 5 2275 - 3660 1227 461 aa, chain - ## HITS:1 COG:HP1452 KEGG:ns NR:ns ## COG: HP1452 COG0486 # Protein_GI_number: 15646061 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Helicobacter pylori 26695 # 6 461 13 461 461 349 45.0 5e-96 MNFNTNDTIVAPATTYGKSSLNIIRLSGQDSLKIASKLAKIDLKNPKVRHAKLTKIYFEN GELLDECIIIYFKSPHSYTTEDVIEFQCHGGTFIAQNILEECLKYGARLANPGEFTKRAF LGGRIDLSQAQAVAKLIESSNANAHKMLMRHLNGEMQEFCENLRTDLITLLAHSEVFIDY ADEELPQDLLKNLQNKLTSILKTLQSLLEQSIQKKSLFEGYKLCIIGKPNVGKSSFLNAL LHNERAIVSDIAGTTRDSIEENFVLEGHLLRLIDTAGIRKSQDIIENKGIERSLQKAKES DILIALFDSSRPLDHEDLEIIELLKNYQDSKKIIVLLNKTDLQNHFDSEVLKPFLPLNLC LKNTNLNSQESLLSNFKNHLISLLNSQESTQSLLLISQYQFQAVKNCIQALYDSKIPLEN GELELFSFHINEALRAIASITKPYEYSQMLDVMFGEFCLGK >gi|197283042|gb|ABQU01000008.1| GENE 6 3644 - 4345 691 233 aa, chain - ## HITS:1 COG:no KEGG:NIS_0882 NR:ns ## KEGG: NIS_0882 # Name: not_defined # Def: hypothetical protein # Organism: Nitratiruptor_SB155-2 # Pathway: not_defined # 3 232 6 245 246 229 54.0 4e-59 MKKIEAQSLEEALIEASKLYDCSIVDLDYEIIQNPKKGFLGFGKKNAIICAQPKNANSHH PKTTSTQNLHTQPPIKETTKDLSEISTHIQNELNELFQFLPYKISEIIVKPYDENTLYIK IDGEDSALLIGKEGYRYKAISYLIFNWINHVYGLMVRLEIAEFLKNQEEMIANYLIPTIE NIKTYGKAQTKPLDGVLAHIAIKQLREQFPNKYISFRLNQDGERYIIINEFQH >gi|197283042|gb|ABQU01000008.1| GENE 7 4342 - 5958 1292 538 aa, chain - ## HITS:1 COG:HP1450 KEGG:ns NR:ns ## COG: HP1450 COG0706 # Protein_GI_number: 15646059 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Helicobacter pylori 26695 # 5 531 1 547 547 510 51.0 1e-144 MLNKLDNLNPQTRIIIAVVLALAFFVPYSYFYSPKENATAKPSQNIQTPSQEQTTPQASI QNVSNTQNSTDSQEIIATIKAKNFEYKIDRLGRITQVLLKEEKYHKDAKDLELFSTDIAN QNNPKTLEIRFSDSMLNQQAFSTPYKASQSDITIQDKPQSITLTQKLQNITIEKILTFYP NGYYEIKINVPQNYTYFLSPGMRPSVENDAYVFKGVIIKEQDNTITTIEDGDASTQNNFT NSSIIAAVDRYYTTLFFSKTNNLNISILNNAQENPMPFISANGNIELFGYIGPKDYRLLE SIDTNLTDVVEYGMITFFAKPLFLLLETLYDLCGNWGWAIILLTLIVRIILYPLTYKGMV SMQKLKDLAPKMKEIQQKYKGEPQKLQAHMMDLYKKHGANPMGGCLPLLLQMPVFFAIYR VLYNAIELKGAAWLLWIQDLSVMDPYFVLPILMGITMYLQQHLTPATFNDPIQEKIFKFL PLIFTIFFVTFPSGLVLYWFVNNIFSILQQLIINKAMERKKAREIAEHKEHKHQKASQ >gi|197283042|gb|ABQU01000008.1| GENE 8 5948 - 6172 61 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310496|ref|ZP_04809651.1| ## NR: gi|242310496|ref|ZP_04809651.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] # 1 74 1 74 74 130 100.0 3e-29 MRILSCNQFFKGGIAYPKIDTKINAHFMSPKTPKYWLIPIKPLRFQPIILKHSMVYPTQN VYIIKNFSKVSRVK >gi|197283042|gb|ABQU01000008.1| GENE 9 6321 - 6650 62 109 aa, chain - ## HITS:1 COG:SP2042 KEGG:ns NR:ns ## COG: SP2042 COG0594 # Protein_GI_number: 15901863 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Streptococcus pneumoniae TIGR4 # 7 107 10 112 123 57 34.0 8e-09 MITLNTKKDFNIVYNSQKKWHNPHFILFFKENIKENRVGFCVSKKVGNAVCRNFIKRRLR SLYRASLPNLINGDMVLLAKNGLDKVDYKTLENHYKHALMRLKLVKQKC >gi|197283042|gb|ABQU01000008.1| GENE 10 6673 - 6807 231 44 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|224418476|ref|ZP_03656482.1| 50S ribosomal protein L34 [Helicobacter canadensis MIT 98-5491] # 1 44 1 44 44 93 100 9e-19 MKRTYQPHNTPRKRTHGFRVRMQTKNGRKVINARRAKGRKRLAV >gi|197283042|gb|ABQU01000008.1| GENE 11 6892 - 8313 1828 473 aa, chain - ## HITS:1 COG:Cj1037c KEGG:ns NR:ns ## COG: Cj1037c COG0439 # Protein_GI_number: 15792364 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Campylobacter jejuni # 4 469 6 475 481 612 67.0 1e-175 MFRRILIANRGEIAVRIIRACNDLNIESVAIYSHADRDSLHVKMATHTYAISEDPIKGYL DPDLIIQAAKATDSEAIHPGYGFLSENALFAKKVKEAGLVWIGPDSEVIAKMGDKNAARN LMIANGIPVVPGTDPLNSLNLYEIQKIARKIGYPIILKASSGGGGRGIRVVWEENELENA LNACKREALTFFKNDDVFMEKYIQNPKHIEFQILADNYGNIIHLLERDCSIQRRHQKLIE IAPCPTISADLRRRMGVVAVAAARAANYTNAGTIEFLIDDSNNFYFMEMNTRIQVEHGVT EEITGLDLIARQIRIAYGEILDLSQSDIIPQGFAIEARINAEDVHNDFIPNPGTITAYYP ALGPFVRVDSYIYKDFTIPPFYDSMVAKLIVRATSYDLAVNKLKRALSEFKIRGVKTTIP FLINICNDKDFKRGIFDTSYLENKINSLMPQESKDESDLVAAIAIALTKHFEE >gi|197283042|gb|ABQU01000008.1| GENE 12 8458 - 9231 718 257 aa, chain + ## HITS:1 COG:Cj0205 KEGG:ns NR:ns ## COG: Cj0205 COG1968 # Protein_GI_number: 15791592 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Campylobacter jejuni # 1 252 1 252 267 246 60.0 3e-65 MELIYAVILGIVEGLTEFLPVSSTGHLILTSKLLGIPQDTFHKTFEVIIQLGSILAVIFV FWERLSKNSFELWVKLAIGFLPAGILGFLLYDLIKSLFAPITTSIMLILGGIVFIVIEIF YKEKEHHTKDVAEITYKQSFLIGIFQALAMIPGTSRSGATIIGGLLLGCNRKVATEFSFL LALPTMIIASGYSAYKNYEVFNSENLLVLGLGFVVAFISAFLAIKLFLGFVSRFNFIPFG IYRIILGVLFLFYLEVF >gi|197283042|gb|ABQU01000008.1| GENE 13 9232 - 11340 2085 702 aa, chain - ## HITS:1 COG:Cj1101 KEGG:ns NR:ns ## COG: Cj1101 COG0210 # Protein_GI_number: 15792426 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Campylobacter jejuni # 6 701 4 689 691 558 49.0 1e-158 MQESYLEQLNPPQKEAVTTTEGALLILAGAGSGKTKTITTRLAYLIDEVGIPPSNTLTLT FTNKAAQEMQKRALNMIENTTSHPPLLCTFHKFGLLFLKFYIHYLGRKTNFILADSDDTK KIIKELNAELAPLPLVVSEISRYKNSQISPQEASKNAHNEIYKHIAKVYENYQESLLQNN MVDFDDLLLLPIQIFQNHKEVATEISQKYQYIMVDEYQDTNDLQYQLLKYLCTTHQNLCV VGDDDQSIYSWRGANIQNILNFSKHFQNAKTIKLEENYRSSKHILRAANNLITNNKERLG KTLKSTLGEGKPIEILHSFDEQEEVRNLCKIIKNLLSNGINPKDIAILFRLNALSRSLEE GFNREGIPYILVGAIRFYERSEIKDVISYFRVLINLNDDFSLLRILNKPKRGIGKTTIEK LKNLTQIHLCSIYELFAHPHLQESLQKEIGKKAHTTIKDFFEILKDLQESHKQSSLRFLD DFEEKIGLCNAFLQNNDEIDRVSNIEEFYGLYREYIKQNPLMELEDFLNELALRSDQEDM EMRQEKKGVEGISCMSVHSSKGLEFDYVFIIGLEEGFFPMVREDSNIQEERRLGYVAFTR AKKELYLSYVDSRFYRGNRTNILPSRFLEESGVLKNSYKTFKKENTAITLEDSGFKKGDC VIHKIFGAGRILEVTKSGKETKLKINFGGLFKEILSNYVTKV >gi|197283042|gb|ABQU01000008.1| GENE 14 11492 - 12427 842 311 aa, chain + ## HITS:1 COG:aq_638 KEGG:ns NR:ns ## COG: aq_638 COG0583 # Protein_GI_number: 15606065 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Aquifex aeolicus # 2 307 1 297 303 80 26.0 4e-15 MLYDFTKLRTFMIVVKEKSFSRASMKMGVSQPAVTQQIKHLESYFNTKIIVRRKSGIGLT KEGEELLLIASKIDKILHSHQKEIMHNIHRKEAVKIVCSPTIGNFILPTLLPKLTKEVYP NIQYSISTSLKAIEDLQCGGNGAGEIKMALIESPIFREDIVYREWLEDEIILASTAPLPR VIKEEDLFAYEWINLSLGTHKFAAIKNYLEKLEIEVDKLKIFKQFETYQEVKKCLLRESQ KKSKRAKRYMAFLPYLYIKDELQKKQFYYSKIRGLKLKRRMYLAFCKEDRNDSLIENIGD YLIFNTKIPMY >gi|197283042|gb|ABQU01000008.1| GENE 15 12424 - 13095 178 223 aa, chain - ## HITS:1 COG:HP0806 KEGG:ns NR:ns ## COG: HP0806 COG1451 # Protein_GI_number: 15645425 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Helicobacter pylori 26695 # 6 214 7 197 206 65 25.0 7e-11 MPPYTLKIIQKRNYKNLKMHFCNSSTLLISAPKHITKKECLKFLEENRQWIDTQYHSLQE KYNINLPRNQFFIFGEWKNFSDSHIQSLWEQSFSQDSTKHTKNQLIAYYKNMLDSYLQIR IPHFANIMNLFPNKILYGKSYKQLACCYKHTKNLRFSIRLALMPHWVIDSIIIHELAHLR FPHHQKEFWNLISLYDKEPKKLHQWLKENHTLLYFLHHNLFKS >gi|197283042|gb|ABQU01000008.1| GENE 16 13095 - 14315 1085 406 aa, chain - ## HITS:1 COG:jhp0718 KEGG:ns NR:ns ## COG: jhp0718 COG5659 # Protein_GI_number: 15611785 # Func_class: L Replication, recombination and repair # Function: FOG: Transposase # Organism: Helicobacter pylori J99 # 26 395 33 409 429 209 35.0 6e-54 MQIIQKLFILFLLAPNLILASGRYPSPLPTPTTEILNLDYNKCSTSCLEDYLKQGLIFSF MANFNEDNQNEKLLESLNLLMNNLAISQIPYLSSTKKPFFNIALLFSRKNIGTYSASTTN VILSYLLHQNSRFNFEIFDSKSESQEDLQSTIDTIHSKGYRQIIAILTYNGANNLNLLNI QTPIFIPSVHSSQITSNLSPNIIYGGINYDEQIKELSQLNPQIKAASFYDSSYIGNTIHQ SVLKYNPEISYSMAFNLKDNTNFTKEMKKLQPILNDSRIFLNTPLINSSIILSQITYYDI QTQGIYSTQINYNPTLLSITQAKDRDNMYIANSIGKLEDLFVEEAKLLNADLEYDWINYA TALGIEYFYLKNIPSAKRFFDEKIYNNQVQYDIQILSPKNNRFIQH >gi|197283042|gb|ABQU01000008.1| GENE 17 14306 - 14893 359 195 aa, chain - ## HITS:1 COG:jhp0595 KEGG:ns NR:ns ## COG: jhp0595 COG1573 # Protein_GI_number: 15611662 # Func_class: L Replication, recombination and repair # Function: Uracil-DNA glycosylase # Organism: Helicobacter pylori J99 # 5 186 22 199 209 92 35.0 7e-19 MDFHYCDVYFKKPTQKSFQSNNAKDLHSSIQACQLCSQKLSKPHTGLCNPNSKITFISTT PILDTQLRFASKGAQMLKKIIENVFELRLNEVSILSLLKCEIPQTTQKDAIENCFGYLLK QLEFSHTQTIVILGETTYNHFTKDKTPYKNIQGKILTWNHYTLFPTFSLMQLLTNQSLKA QAHREFLTLKGYLCK >gi|197283042|gb|ABQU01000008.1| GENE 18 15117 - 16520 1595 467 aa, chain + ## HITS:1 COG:no KEGG:WS1237 NR:ns ## KEGG: WS1237 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 17 414 8 386 391 174 37.0 5e-42 MYYIDARGNYSSYIKGVTFSQEIQQNWASRNEENKRLSTSSSQDDYFEKQRLIQEAIAQL KQTGSVSSEIAKEVDVESLKESLENPQTGQASALSMLGQGGESQEAAKNSVLDSKNTIPN PLTLDEETHNNQRLATLDKIAYEASKAKEKEEIKQEIEESLTSKNQESTMTTSASMGVFL EKTLVQTSTTKPQNVSEEVKNAYNPLEVKEGENIAQNAVSFVDEVSGKTISVPLSEENVE KLVAKFGSLEEASDYVKGWYYDAAYNMGYLSGDSNGDGSISLEEGIHLKSLVSLKDSQYY SISERIPGGEEAQKKFLEQVGFIDNLGDYINHSISQDSNLDGALNLNEMMGDNNELVLFK TGGESNNVDIFVIQKFSFEIGEVEETLNDILLNLGTKDEKQEVANSDFKDEEEENQEKLV AKKEEMQEWLEMAKKLQDENYLNSLDSKERENLIKTEVILNNLFASA >gi|197283042|gb|ABQU01000008.1| GENE 19 16627 - 17205 604 192 aa, chain - ## HITS:1 COG:SPCC553.04_2 KEGG:ns NR:ns ## COG: SPCC553.04_2 COG0652 # Protein_GI_number: 19075269 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Schizosaccharomyces pombe # 35 191 98 249 251 170 52.0 1e-42 MKASIHFLLKIFIGFLCLGFIAYAQTSTDSKKIQAVLETTAGKITLDLFPEVAPKAVENF VTHINNGYYNGTIFHRTIRKFMIQGGDPTGSGKGGESIWGEDFEDEIAKGYAFDKAGILA MANAGPNTNGSQFFITTTRTPHLNGLHTIFGEISKENKQESFKTLRKIEYSPTNSQDKPI KEQKIIKAYIIQ >gi|197283042|gb|ABQU01000008.1| GENE 20 17177 - 18106 1077 309 aa, chain - ## HITS:1 COG:HP0742 KEGG:ns NR:ns ## COG: HP0742 COG0462 # Protein_GI_number: 15645362 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Helicobacter pylori 26695 # 1 308 10 317 318 440 70.0 1e-123 MQDFKLFSGNAHREFAQNVAKNLDIELSLAEITRFSDGEINIRLCESVRGKEVFVIQPTC APANDNLMELLIMVDALKRSSASSINVIMPYFGYARQDRKAAPRVPISAKLVADLLQRAG ITRLITMDLHAGQIQGFFDIPVDNLYGSIVLKDHIASKNLKNPIVASPDIGGVARARYFA KLLGLEIVIVDKRRERANESEVMNVIGNVEGKDVILIDDMIDTAGTIVKAAEAFKKNGAT SVIALGTHAVFSGAAYQRIQESSIDEVIITDTIPLKGNCSKIKVLSVAPLFAEVIKRINN NESVNSLFA >gi|197283042|gb|ABQU01000008.1| GENE 21 18178 - 18732 552 184 aa, chain - ## HITS:1 COG:BH2056 KEGG:ns NR:ns ## COG: BH2056 COG3963 # Protein_GI_number: 15614619 # Func_class: I Lipid transport and metabolism # Function: Phospholipid N-methyltransferase # Organism: Bacillus halodurans # 4 182 9 183 187 93 34.0 2e-19 MLLQFLKNPKHTGALHSSSHSLSCMMTKNIGIQNAKYIAEIGPGLGVFTQKILNLKQKDA RFFAIEINPYFAKKLQEKFENLEVENKNANQILSIMQNKQIAQLDVVVSGIPWSLLKAKE QDILLKNIHHSLKNGGYFSTFAYILPTPKTILFRKKLQKYFSHIKTSKVVWNNLPPAFVY YCKK Prediction of potential genes in microbial genomes Time: Tue May 24 02:01:22 2011 Seq name: gi|197283041|gb|ABQU01000009.1| Helicobacter pullorum MIT 98-5489 cont2.9, whole genome shotgun sequence Length of sequence - 78032 bp Number of predicted genes - 78, with homology - 78 Number of transcription units - 24, operones - 17 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 1840 1527 ## COG2604 Uncharacterized protein conserved in bacteria 2 1 Op 2 . + CDS 1902 - 2459 679 ## COG3018 Uncharacterized protein conserved in bacteria 3 1 Op 3 . + CDS 2426 - 2929 348 ## WS1755 hypothetical protein 4 1 Op 4 1/0.083 + CDS 2941 - 3633 530 ## COG4123 Predicted O-methyltransferase 5 1 Op 5 4/0.000 + CDS 3627 - 4004 417 ## COG0727 Predicted Fe-S-cluster oxidoreductase 6 1 Op 6 1/0.083 + CDS 3988 - 5283 947 ## COG0457 FOG: TPR repeat 7 1 Op 7 . + CDS 5298 - 6041 1002 ## COG4221 Short-chain alcohol dehydrogenase of unknown specificity 8 2 Op 1 14/0.000 - CDS 6038 - 6388 454 ## COG0799 Uncharacterized homolog of plant Iojap protein 9 2 Op 2 . - CDS 6340 - 6942 477 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase - Prom 6962 - 7021 9.0 + Prom 6710 - 6769 5.1 10 3 Op 1 1/0.083 + CDS 6995 - 7723 442 ## COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases 11 3 Op 2 3/0.000 + CDS 7796 - 8821 795 ## COG0795 Predicted permeases 12 3 Op 3 5/0.000 + CDS 8821 - 9543 516 ## COG0101 Pseudouridylate synthase 13 3 Op 4 . + CDS 9621 - 10187 545 ## COG0586 Uncharacterized membrane-associated protein 14 3 Op 5 . + CDS 10193 - 13633 3310 ## COG1410 Methionine synthase I, cobalamin-binding domain 15 3 Op 6 . + CDS 13643 - 13999 392 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase + Prom 14009 - 14068 5.7 16 4 Op 1 3/0.000 + CDS 14088 - 14696 633 ## COG0586 Uncharacterized membrane-associated protein 17 4 Op 2 3/0.000 + CDS 14677 - 16101 1414 ## COG0260 Leucyl aminopeptidase 18 4 Op 3 . + CDS 16111 - 17214 1422 ## COG0012 Predicted GTPase, probable translation factor + Term 17227 - 17265 3.4 19 5 Op 1 . - CDS 17238 - 17720 523 ## gi|242310528|ref|ZP_04809683.1| predicted protein - Prom 17781 - 17840 3.0 20 5 Op 2 . - CDS 17861 - 18073 352 ## PROTEIN SUPPORTED gi|224418443|ref|ZP_03656449.1| 30S ribosomal protein S21 - Prom 18102 - 18161 9.8 + Prom 18121 - 18180 8.4 21 6 Op 1 . + CDS 18214 - 20862 3042 ## DvMF_1880 outer membrane autotransporter barrel domain protein + Prom 20868 - 20927 4.7 22 6 Op 2 . + CDS 20949 - 22328 1186 ## COG0348 Polyferredoxin + Prom 22331 - 22390 3.3 23 7 Tu 1 . + CDS 22418 - 23392 792 ## COG0628 Predicted permease + Term 23467 - 23509 -1.0 24 8 Tu 1 . - CDS 23389 - 26031 2781 ## COG0525 Valyl-tRNA synthetase - Prom 26157 - 26216 9.1 + Prom 26030 - 26089 5.8 25 9 Op 1 . + CDS 26200 - 26592 545 ## COG1699 Uncharacterized protein conserved in bacteria 26 9 Op 2 . + CDS 26598 - 28628 1986 ## COG0210 Superfamily I DNA and RNA helicases + Term 28866 - 28916 3.5 27 10 Op 1 6/0.000 - CDS 28625 - 29998 1076 ## COG0840 Methyl-accepting chemotaxis protein 28 10 Op 2 . - CDS 29995 - 30522 500 ## COG2202 FOG: PAS/PAC domain - Prom 30640 - 30699 11.2 + Prom 30637 - 30696 14.6 29 11 Op 1 . + CDS 30744 - 31817 952 ## COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes 30 11 Op 2 . + CDS 31819 - 32277 578 ## COG2236 Predicted phosphoribosyltransferases + Term 32350 - 32398 1.1 - Term 32126 - 32173 -0.5 31 12 Tu 1 . - CDS 32280 - 32735 455 ## COG0735 Fe2+/Zn2+ uptake regulation proteins - Prom 32784 - 32843 13.8 + Prom 32809 - 32868 12.4 32 13 Op 1 . + CDS 32921 - 33226 239 ## COG4378 Uncharacterized protein conserved in bacteria + Prom 33235 - 33294 3.7 33 13 Op 2 . + CDS 33314 - 34006 668 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Prom 34021 - 34080 10.2 34 14 Op 1 . + CDS 34105 - 36039 1614 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 35 14 Op 2 . + CDS 36039 - 37742 242 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 36 14 Op 3 . + CDS 37801 - 38760 921 ## COG0835 Chemotaxis signal transduction protein + Prom 38862 - 38921 7.8 37 15 Op 1 10/0.000 + CDS 38955 - 41741 2883 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 38 15 Op 2 7/0.000 + CDS 41747 - 42520 700 ## COG1145 Ferredoxin 39 15 Op 3 4/0.000 + CDS 42547 - 43320 467 ## COG0348 Polyferredoxin 40 15 Op 4 . + CDS 43322 - 43846 608 ## COG3043 Nitrate reductase cytochrome c-type subunit + Term 43864 - 43915 0.6 + Prom 43880 - 43939 3.4 41 16 Op 1 . + CDS 43963 - 44358 224 ## COG1145 Ferredoxin 42 16 Op 2 . + CDS 44351 - 45307 1016 ## WS1171 putative periplasmic protein 43 16 Op 3 . + CDS 45319 - 45705 477 ## NIS_1802 periplasmic nitrate reductase component NapD (EC:1.7.99.4) 44 16 Op 4 . + CDS 45752 - 46048 205 ## gi|242310553|ref|ZP_04809708.1| predicted protein + Prom 46079 - 46138 5.5 45 17 Op 1 30/0.000 + CDS 46172 - 46561 412 ## PROTEIN SUPPORTED gi|154175415|ref|YP_001407462.1| NADH dehydrogenase subunit A 46 17 Op 2 34/0.000 + CDS 46543 - 47052 747 ## PROTEIN SUPPORTED gi|154175216|ref|YP_001407461.1| NADH dehydrogenase subunit B 47 17 Op 3 22/0.000 + CDS 47062 - 47862 873 ## COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit 48 17 Op 4 . + CDS 47864 - 49093 1569 ## COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7 49 17 Op 5 . + CDS 49090 - 49320 259 ## SUN_2228 hypothetical protein 50 17 Op 6 . + CDS 49322 - 50152 731 ## Abu_2232 hypothetical protein (EC:1.6.5.3) 51 17 Op 7 18/0.000 + CDS 50152 - 52602 2405 ## COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) 52 17 Op 8 31/0.000 + CDS 52599 - 53606 1109 ## COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H) 53 17 Op 9 28/0.000 + CDS 53633 - 54217 508 ## COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) 54 17 Op 10 30/0.000 + CDS 54210 - 54773 723 ## COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J) 55 17 Op 11 26/0.000 + CDS 54770 - 55072 355 ## COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) 56 17 Op 12 30/0.000 + CDS 55076 - 56935 1149 ## COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit 57 17 Op 13 22/0.000 + CDS 56920 - 58458 1276 ## COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M) 58 17 Op 14 . + CDS 58458 - 59939 1435 ## COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N) + Term 60073 - 60121 1.1 59 18 Tu 1 . - CDS 59953 - 60480 486 ## gi|242310568|ref|ZP_04809723.1| predicted protein - Prom 60501 - 60560 6.6 + Prom 60500 - 60559 14.1 60 19 Tu 1 . + CDS 60579 - 61253 559 ## WS1936 hypothetical protein 61 20 Op 1 1/0.083 - CDS 61217 - 61744 425 ## COG1267 Phosphatidylglycerophosphatase A and related proteins 62 20 Op 2 1/0.083 - CDS 61752 - 62951 695 ## COG2046 ATP sulfurylase (sulfate adenylyltransferase) 63 20 Op 3 3/0.000 - CDS 62929 - 63816 742 ## COG0784 FOG: CheY-like receiver 64 20 Op 4 1/0.083 - CDS 63825 - 64985 918 ## COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 65 20 Op 5 . - CDS 65058 - 66701 1928 ## COG0840 Methyl-accepting chemotaxis protein 66 20 Op 6 3/0.000 - CDS 66772 - 68067 833 ## COG0247 Fe-S oxidoreductase 67 20 Op 7 . - CDS 68076 - 69443 1241 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 68 20 Op 8 . - CDS 69460 - 69894 303 ## CFF8240_1572 hypothetical protein 69 20 Op 9 . - CDS 69873 - 70793 906 ## COG0078 Ornithine carbamoyltransferase - Prom 70830 - 70889 9.5 + Prom 70770 - 70829 9.7 70 21 Tu 1 . + CDS 70908 - 71252 343 ## COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) + Term 71299 - 71333 -0.8 71 22 Op 1 . - CDS 71230 - 71706 429 ## COG0219 Predicted rRNA methylase (SpoU class) 72 22 Op 2 . - CDS 71710 - 72051 257 ## gi|242310581|ref|ZP_04809736.1| predicted protein 73 22 Op 3 . - CDS 72052 - 72528 646 ## COG1607 Acyl-CoA hydrolase - Prom 72603 - 72662 7.6 + Prom 72635 - 72694 7.7 74 23 Tu 1 . + CDS 72717 - 73796 732 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase + Term 73928 - 73962 2.1 - Term 73784 - 73819 3.1 75 24 Op 1 20/0.000 - CDS 73825 - 74316 726 ## COG0835 Chemotaxis signal transduction protein 76 24 Op 2 20/0.000 - CDS 74316 - 76739 2880 ## COG0643 Chemotaxis protein histidine kinase and related kinases 77 24 Op 3 . - CDS 76766 - 77731 967 ## COG0835 Chemotaxis signal transduction protein 78 24 Op 4 . - CDS 77731 - 78024 147 ## gi|242310587|ref|ZP_04809742.1| predicted protein Predicted protein(s) >gi|197283041|gb|ABQU01000009.1| GENE 1 2 - 1840 1527 612 aa, chain + ## HITS:1 COG:HP0465 KEGG:ns NR:ns ## COG: HP0465 COG2604 # Protein_GI_number: 15645093 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori 26695 # 1 604 27 618 631 394 37.0 1e-109 LQFFEANYPNLFSALQQPLRDYQLYIGKEGINIIETKTNSLMYPMHNGESTMLLVHENCA FNPPINEKWNRIYGTEMAMMNENFPYSSIMVNGVLEFLSQNGGITSYHLPSDFLPNISLF GLGGGIFLQILNEKYSAIHNFFIFEESLDLFRIACFFVDFGSLFQKVENKGGYIFIESMM KRDYVLNFFLSRRISTSVMRLELMMYQTPVNISARSIVYELHLQSLRGWGTYEDEMIGIK NKKSYPLYPMLVEPKRINAPICVIANGPSLDFLLPFIKKNQNKMILFSCGTALKPLLNAG IRPDFQIEIERHHYLGDVLKEAPLGDIPLLCATVLNKEAKELAKEIYLFERDGSSAANLN EPKFKVKFTAPLVGNAGASLASYLGSDVILCGLDCGYKKGAKKHAKNSYYGEEDEKLPEG VYKVDGNFSDDIYSDALYSLSRNALEEAFRALKPFNILNLNDGAYIKGATPIYFQDFELK EINKNQEIKNLKSLFKNPQECGFYTKETQLYIFEILAFKNSIRDLFNVEVQNKKGLFIAV DKIFEEISKVSQKNPFVGILFGGTLSHFLYHIALGSLHLPYDDMRSFWAKVVELYEDSME QMIENLRKVILQ >gi|197283041|gb|ABQU01000009.1| GENE 2 1902 - 2459 679 185 aa, chain + ## HITS:1 COG:jhp0775 KEGG:ns NR:ns ## COG: jhp0775 COG3018 # Protein_GI_number: 15611842 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori J99 # 67 182 83 198 201 187 79.0 7e-48 MATKKTISLVLAGMLLGTNLLVAQVNSTTTTANSVSPVGNAGIQSGRNSNVPAGLQGVEV GGDDIVIPNAPMITPSSIIEISAVGMGVAPESTLSPAQALALAKRAAIVDAYRQIGEKMY GIRVNAQDTVRDMVLKNSTVKTKVMAVIRNAEIIETIYKDGLCQVNMELKLDGKRWYRIL TGENF >gi|197283041|gb|ABQU01000009.1| GENE 3 2426 - 2929 348 167 aa, chain + ## HITS:1 COG:no KEGG:WS1755 NR:ns ## KEGG: WS1755 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 8 166 11 168 168 94 33.0 1e-18 MVPHFNRRKLLVFLFVVLVGGCMKAPSNLEQTIPKIIFFSTKDFKFYDTGFIKTYANGDI SLEIFNVGHLLLRFLVFQDRICINQQCYAKASAVRQFFGNDAMRGIDFSEILQGREIFGG KNKENLKNGYEQKLQIGSSKIVYQVTDKQIYFKENTSGFTLIVTELN >gi|197283041|gb|ABQU01000009.1| GENE 4 2941 - 3633 530 230 aa, chain + ## HITS:1 COG:HP1504 KEGG:ns NR:ns ## COG: HP1504 COG4123 # Protein_GI_number: 15646113 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Helicobacter pylori 26695 # 1 229 6 234 238 163 41.0 2e-40 MQIYQPKDGYCYNSDTLFLYDFALNFLKKHQKILEVGSGSGVLGMLCARDVEIDLMMIEK NPKMWELCQQNLRVNKIKAELLNGDFLQYDFLDLKFDCILSNPPFYHNGVIKSVNNDICM ARYEENLPFEAMVQKINILLKPQGEFIFCYDCRESFKVFGILFKYKIRPITICYVHPKED KEATLLLCRAKKDSKSQMRILPPIFTHNANGFTKKVQEIYKRANTWSIKC >gi|197283041|gb|ABQU01000009.1| GENE 5 3627 - 4004 417 125 aa, chain + ## HITS:1 COG:jhp0259 KEGG:ns NR:ns ## COG: jhp0259 COG0727 # Protein_GI_number: 15611329 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster oxidoreductase # Organism: Helicobacter pylori J99 # 6 125 3 125 132 109 52.0 1e-24 MLEAEDFLFVFDENQCAKCGGKCCKGESGYIFVTSNEIQKIAESLQMEFDEFCLKFVKKV GYRYSLIEKKEKEGEGYACVFFDEEGGKCQIYENRPKQCKQFPFWECYKKDYEILMKECI GVIKK >gi|197283041|gb|ABQU01000009.1| GENE 6 3988 - 5283 947 431 aa, chain + ## HITS:1 COG:jhp0260 KEGG:ns NR:ns ## COG: jhp0260 COG0457 # Protein_GI_number: 15611330 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Helicobacter pylori J99 # 44 430 29 430 431 143 27.0 7e-34 MLLRNKILISIVGGFCLFVLLMGCLPNAKIAFVDNSYQEVNNQEDIYIIQAYVALDMGDY KTARENLQKAYELTKNKEYLREIIGLLVLEKDFLKAKNAAKDYLKVSPNDEKVRQALVEI LGSMGDLQGAVQEVQILLKNNASVQNLEIASSVYFLQKDYSRALEYLQKAYEINKDEKIL DKIVSIHLLFFKDRNKAIMVYETHIKKYGISKNVGEKLALIYLEDKKFLEAARNYEKLYK ATREQKYARFALEIYIKGQYLTKAERFLEQNPSIQSRDEMLLEIYRLNKETTKSIQLLQK LYKKSGNVDYLALEAMILYENSTNKNQTFLKKIVGKFEEVLKKSDNSLYWNYLGYLLIDH NLDVKKGIQCVQKALEKEPQNPYYLDSLAWGYYKQKDCKNAKEIINKISKEEREKEKEIF EHFRIIEKCKF >gi|197283041|gb|ABQU01000009.1| GENE 7 5298 - 6041 1002 247 aa, chain + ## HITS:1 COG:STM1511 KEGG:ns NR:ns ## COG: STM1511 COG4221 # Protein_GI_number: 16764856 # Func_class: R General function prediction only # Function: Short-chain alcohol dehydrogenase of unknown specificity # Organism: Salmonella typhimurium LT2 # 1 246 1 247 248 317 61.0 2e-86 MVVLVTGASAGFGREIARIFAKNGHKIIALARRKERLEELQKEIGECVILPCDICDKAKV KAHLESLPQDYREIDVLVNNAGLALGMAGASECDFADWEQMIEVNIKALAYITHLVLPQM VKRKSGHIITLGSIAGRWPYPGGNVYGASKAFVRQFALNLRADLAGTNVRVSDIEPGLSS DSEFSLVRFKGDKEKVDELYKNSNALKPQDIAEAVYWVATLPKHVNVNTLEMMPTTQSFA ALNVYKG >gi|197283041|gb|ABQU01000009.1| GENE 8 6038 - 6388 454 116 aa, chain - ## HITS:1 COG:jhp1309 KEGG:ns NR:ns ## COG: jhp1309 COG0799 # Protein_GI_number: 15612374 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Helicobacter pylori J99 # 9 106 5 102 113 96 52.0 1e-20 MQNNRQEIIHFIQQLLEDKKGENIEIFDLKDTDYFVDYVMIATAFVDKHALALLDTLKKE LKQKGESFFNIDDENPDWIVADLGDIIVHIFTENQRKKFNLEEFLSKIAMQQRLES >gi|197283041|gb|ABQU01000009.1| GENE 9 6340 - 6942 477 200 aa, chain - ## HITS:1 COG:Cj1404 KEGG:ns NR:ns ## COG: Cj1404 COG1057 # Protein_GI_number: 15792722 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Campylobacter jejuni # 4 165 3 162 181 124 40.0 1e-28 MQNIAVFGGSFDPPHLGHLEIIQSVFRFLTIEKLFVVPAFLNPFKTHSLFSPQKRLEWLK ILTQDMPLPIEILDFEINQNKPTPTIETIKFIQRTYKPQKIYLILGADNLKNLTKWHQYK NLKNQVEFVIIPRAHYKIDSKYQALPVEKIPISSTQIKEMLDNQDSKALEFIPKMILNDI LKETNCKTIDKRLSILSNNS >gi|197283041|gb|ABQU01000009.1| GENE 10 6995 - 7723 442 242 aa, chain + ## HITS:1 COG:aq_1601 KEGG:ns NR:ns ## COG: aq_1601 COG1989 # Protein_GI_number: 15606720 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases # Organism: Aquifex aeolicus # 3 229 7 236 254 124 37.0 2e-28 MEFVFVVLFGIALGSFGNVLIFRIPKNISIVMPSSFCPKCKKSLQWRDKIPIFSYVFLRG KSRCCGNQIPFWYCLSEILGGIFVLFSFYYYGISGIVCFLLLLNFYVLSVIDWQFFEIPD SLNFLNLAFAVVFGGLFGEAKWLLDSWVESFVCAFLFMGIASFLRLFVGSIFKKEVLGEG DIIVFGALGASLGIFGGSLAILFASGYALVFMLFARKSLVPFVPFLFIGFLSVIGLMSLK FL >gi|197283041|gb|ABQU01000009.1| GENE 11 7796 - 8821 795 341 aa, chain + ## HITS:1 COG:HP0362 KEGG:ns NR:ns ## COG: HP0362 COG0795 # Protein_GI_number: 15644990 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Helicobacter pylori 26695 # 3 341 2 345 345 228 40.0 1e-59 MRIKNYLFHSFSQIFFPTFLVLFFIASVVIFIRIAGVTFVVQISFLELLSLYFYTLPLML FFVIPLSFFVACALSLSRLSFDYELPVLFALGMSPNKIIKIFFPIALLASISLFILSLIL TPLSDLAYRQFLEERKNSININLQAGEFGQKLGNWLVYVKENHEDMSYKDIVLLSFGKEG GLIFAKDAKIINKDGVMEAILDNGKIYRPDENAIEKIAFKTLILRNSITDISGQNLGVFE YWNRAFYENDRQRKTLRDLSMYVLMSLFPFVSLYFFPLLGVKNPRYQRNHTILQSMLIIG VFYALTYLVANYLPLIGMVLLPIVWGLAGYFGYQRFVRRYY >gi|197283041|gb|ABQU01000009.1| GENE 12 8821 - 9543 516 240 aa, chain + ## HITS:1 COG:Cj0827 KEGG:ns NR:ns ## COG: Cj0827 COG0101 # Protein_GI_number: 15792165 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Campylobacter jejuni # 1 240 1 241 241 160 40.0 1e-39 MMKVAMKIAYNGANFCGFQKQKDRQSVSGFLEEVFGSVGIFEKIIGSGRTDKGVHASAQV ISLKIPDFHKDLQKLQEILNLKLYPLVKIKKIWRVDDDFHARFDAKRRGYCYVISQEYSP FIAPFAHYYCFQNVGIIKEALREFEGLHNFKAFMKNDGSGAKGSVREIYKARLLKRGKFY IFLFWGNGFLRSQIRLMVGYLLEIDKGNLQISDLKKQLLGERIFSIPAPPNGLFLSSVKY >gi|197283041|gb|ABQU01000009.1| GENE 13 9621 - 10187 545 188 aa, chain + ## HITS:1 COG:Cj1210 KEGG:ns NR:ns ## COG: Cj1210 COG0586 # Protein_GI_number: 15792534 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Campylobacter jejuni # 1 185 1 185 185 147 45.0 8e-36 MQETIDLIVKYGYIILFLYSLGGGFVALVGASVLSYAGKMDLTISIFVAVFANFLGDMAL FYLARYQKQGMMPYLSKHRRKLAYIHLLMKRYGSIILVLKKYVYGLKTLVPFAVALTSYS FVKFSFYNALGAVLWGVSIGLLGYFLGEIIIKGIDLLGEYPYLAPIFIIILFGGLWFWLN SVSKKQRK >gi|197283041|gb|ABQU01000009.1| GENE 14 10193 - 13633 3310 1146 aa, chain + ## HITS:1 COG:Rv2124c_2 KEGG:ns NR:ns ## COG: Rv2124c_2 COG1410 # Protein_GI_number: 15609261 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase I, cobalamin-binding domain # Organism: Mycobacterium tuberculosis H37Rv # 319 1144 14 880 882 567 39.0 1e-161 MKKKLQELIQKQVLILDGAMGTEIQKRENIKWGRNAKGESLAGCTEALNLYSPQIIYEIY TSYLQAGANIITSNTFGAMEWVLAEYEMQEHSKEIAKLGVQLAKEAILKHKPLENQKDAL FVAGSLGPGTKLPSLGHIDYDTMFLGYCKVVSGFKEANVDLILLETAQDPLQIKAALHAI REIDKEIPIMVSATIETNGSMLIGTDIATLFYILEPFDIFSLGINCGLGPDLAKKYLLEL SQVSKFPISIHANAGLPQNKGGVTYYPMEAEEFSEIESEFLKISGVALLGGCCGTTPKHI QKLVEKTKDKIPSLPKGEYKPSIASLFGAYELKQNPAPLLIGERSNATGSKAFRELLLNE NYEGALGVGSEQVKKGAHVLDVSVAFAGRDESKDMQELISLYATKIPLPLMPDSTQVIAL EIALKLIGGRCIINSANLEDGIEKFDKIAGLAKKFGCVLVCLTIDEKGMCKTKERKVECA KRMMQRAIEVHHLREEDIIFDPLTFTIGSGDEEYFTAGMETLGAIEEIMKIYPKAGSTLG LSNISFGLSKEGRICLNSVFLYHAIQKGLTSAIVNVAHIIPYARLEREDIQVCEDLIFNT QKTSQPLYDFISYFEKKSGLDLDSKEDESHLSTQERISKYLIEGDLNAMQKILPVAKDEI NPEVIVNEILIDAMKVVGERFGAGEMQLPFVLQSAEVMKKSVDYLNEFLPKKTNSHKTTI VIGTVKGDVHDVGKNLVDIILSNNGFNVINIGIKAELEKFLEVLKKEKVDCIGMSGLLVK STLVMKENLEELKRLGIKIPIMLGGAALNRNFVDEYCRPNYDGVIFYCKDAFDSVAAMQI IQSGDFSDITLPSQKNKNEDSKLEQRVAKKLEKQLEVKEIFKPIKCELEFSYEVYKPPFF GRKVLQLSHQEILEVFDYLDKDLLFKHRWGYSKLKKDEYLKLKENELEPMLESLKKEFIE QNIFAPVALYGYYHTRTKIPEDKTQGLILEVSENCDFKKVESFLFPRSSKKPYLCLGDYF NKEQDICALHLVSSGLNLAPFEEKLYQESQYHKYYLVHALGVELAEALADFVHQRVRREL GLGEKEGQRYSFGYPACPDLALNEGLFNLLKPQEFGITLSETYQMSPEATTSALIVPHKE AKYFAL >gi|197283041|gb|ABQU01000009.1| GENE 15 13643 - 13999 392 118 aa, chain + ## HITS:1 COG:Cj1112c KEGG:ns NR:ns ## COG: Cj1112c COG0229 # Protein_GI_number: 15792437 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Campylobacter jejuni # 3 117 2 116 119 159 68.0 1e-39 MFRKLSSEEEWVILHKGTEAPFSGEYENFFEKGVYLCKQCGNILYDSKDKFHSGCGWPSF DDCNKGAVMEQLDSDGRRIEIVCAKCGGHLGHIFRGEGFTKKNVRHCVNSISLVFQKD >gi|197283041|gb|ABQU01000009.1| GENE 16 14088 - 14696 633 202 aa, chain + ## HITS:1 COG:Cj0928 KEGG:ns NR:ns ## COG: Cj0928 COG0586 # Protein_GI_number: 15792257 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Campylobacter jejuni # 1 189 1 192 198 206 60.0 3e-53 MEELFIQWLQEYGYIILFLWSILEGELGLIMAGIMCHTGHMVIPIAILVAGLGGFVGDQI YFYIGRYNKQFIYKKLKTQRRKFAFAHLLLQKYGWPIIFVQRYLYGMRTIIPMSIGVTRY SAKTFAFINLISAMVWAAITILLAYFFGEELLALVHFGKEHYYVAIPFVVILGGGIYYYL HKMTQKVEKKIIGESKNENISK >gi|197283041|gb|ABQU01000009.1| GENE 17 14677 - 16101 1414 474 aa, chain + ## HITS:1 COG:jhp0517 KEGG:ns NR:ns ## COG: jhp0517 COG0260 # Protein_GI_number: 15611584 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase # Organism: Helicobacter pylori J99 # 31 474 36 494 496 443 52.0 1e-124 MKILASEKQADVKIILLRDKKLPTNLSKTEKEVLKIHNFEGEGCCFLSESKTCFVGLEKY NYEFPNALSDALANAIQSLKKLKIKSVSIEIEKKEEIQKACLGILLGMYSYDAFKSVKSK TDLSEVYLVSKKIDKTTLQNGILESTILAQSINNVRDLVNTPPQQATPKYVADYAKELAK KSGFECKVYDKKFLEKEKMGAFLAVARASVNEPYLVHLSYKPKIARGEKLLKFVFVGKGL TYDSGGLSLKPGDYMTTMKADKSGACAVIGILETIAKLGIKAEVHGILGLAENMIGGNAY KPDDILIARNQKSIEVRNTDAEGRLVLADCLSFASDLKPDFLVDLATLTGACVVALGDYT TGIMGYNKKLKEDFAAAAWNVGELTGILPFNPYLGKLFKSEVADLCNIPSSRYGSAITAG MFLGEFVEESLKDKWLHLDIAGPAYVEKNWGVNPFGGSGAGVRACVEFIKNKIK >gi|197283041|gb|ABQU01000009.1| GENE 18 16111 - 17214 1422 367 aa, chain + ## HITS:1 COG:Cj0930 KEGG:ns NR:ns ## COG: Cj0930 COG0012 # Protein_GI_number: 15792259 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Campylobacter jejuni # 1 367 1 367 367 502 70.0 1e-142 MGLSIGIVGLPNVGKSTTFNALTKTQNAQAANYPFCTIEPNKAVVPVPDTRLQELAKIVN PERIQNSVVEFVDIAGLVKGASKGEGLGNQFLANIRETEVILHIVRCFEDSNITHVEGSI DPLRDVEIIETELLIADMQTLQKRVEKLTRMAKSGTDKEAKKTLEVAQELLEHIENGNPV RTFGNKDEVFLGLDKELRFLTNKEIIYGANVDEVGLNADNSFVEQLREYAKKNGAEVIKL CSKIEEELVGLSQEEQEEFLQELGVKESGLNAVIRLGFSKLGLISYFTAGVKEVRAWTIH RGDKAPVAAGVIHKDFEKGFIRAEVISYEDFIKYGGEAKAKEAGAMRVEGKDYIVVDGDV MHFRFNV >gi|197283041|gb|ABQU01000009.1| GENE 19 17238 - 17720 523 160 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310528|ref|ZP_04809683.1| ## NR: gi|242310528|ref|ZP_04809683.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 160 2 161 161 237 100.0 1e-61 MNITDKNTSMWGLLSQSYNKNNNNENNITGYSSSKSDSIFGTQETSSTDLVSSLFSQENS LYSPSQIQDSVEISSDLSKMQNFASIFSGDLKNLGNAMYENGILNKEEKMGYDILMKLNP TLDTQTTQNILQTPTLSEENRNLLANVDKKIGAVRYFGGF >gi|197283041|gb|ABQU01000009.1| GENE 20 17861 - 18073 352 70 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|224418443|ref|ZP_03656449.1| 30S ribosomal protein S21 [Helicobacter canadensis MIT 98-5491] # 1 70 1 70 70 140 100 3e-32 MPGIKVRENESFDDAYRKFKKQADRNLVVTESRARRFFEPMTEKRKKQKISARKKMLKRL YMLRRYESRL >gi|197283041|gb|ABQU01000009.1| GENE 21 18214 - 20862 3042 882 aa, chain + ## HITS:1 COG:no KEGG:DvMF_1880 NR:ns ## KEGG: DvMF_1880 # Name: not_defined # Def: outer membrane autotransporter barrel domain protein # Organism: D.vulgaris_Miyazaki_F # Pathway: not_defined # 25 882 49 936 936 94 24.0 2e-17 MRRVIGGVMLFHYLWAQNLVMENENQGFSEQNNPTGKYQKWFAPVEQNGQTYRRNQITIK ANFDGLALGGYSEYYWVNVEDNRVLVEGEVSNAVGGYSKNGAVIANLVEIEGVSNKAIGG YTESKASAYDNGVDIYGKVFRAVSGCSKNGLARANSIYIANGGEATEVYGGVGMSADENE IYIENGAKILGNSYVGYGVRGDSLNNLGIFYGDVEGDIYSGYTKQGDVSYNIVEVYGNAK NVYGGKSEEGRASENSVLIEGVITGEVKGGESTLGANSNFINIHKNAKVEGDIYGGHSTT ENADRNFVTIQEGAEINSNNIYGGYGERLAIGNQINLKGVVFGGVQNNIVGGYAKSGANN NDITLENINGNLSVIGGESESGHSNYNLVMIKDSQGIAEAIGGKGNESLHNTVVLYGNTG ANNVYGGYGADAKYNLVMLEDEAVINGSVYGGFDGSGGIDEGNSIFVSGNIQVKERLAGF DTLYLHAKEQNLNKHILIIGEYEQNNVGDSLDLKGKKLVISAQNVKVGDDIKLIWASSGI EVDENTQIRGNETFVFDTWTPQKEEIFSHELKLEDLPHTRQISPESKSLTQAFAGSLAFI RESQERMSDGVNYYKEKAKEGETQVFLNVGGGYSHYNNLDIKMHGFHMQLNALKNYQNTF WANLFFENGYGQSKTDLANIVGKVGHSYVGGGLAFLYDFESGFYSKAVAKGGVIKTDFDY FYNQTEDKVDFKSSVPYGSLSLGGGYLVNLGENFKLDIGIGYHFGYVDGDEVGLSNNSMD RLTMQDNYAHSFNVDSVVRYGRDNFNTAIGISWEKLLNNEIKSAVNGYDLESLSLEGDYL ALLFSMGFQPTLKIPLSIDFKWKGYVLDRKGISADVSINYKF >gi|197283041|gb|ABQU01000009.1| GENE 22 20949 - 22328 1186 459 aa, chain + ## HITS:1 COG:Cj0369c KEGG:ns NR:ns ## COG: Cj0369c COG0348 # Protein_GI_number: 15791736 # Func_class: C Energy production and conversion # Function: Polyferredoxin # Organism: Campylobacter jejuni # 9 459 5 454 458 476 53.0 1e-134 MENKQELKIHQYFKRRYWVYFVATLIIFCVPFIKINGNQIFLLSFDHKQLHLFGVAFDMQ ELYLMPFLLILMFLMIFFLTTLAGRVWCGWACPQTIFRVLYRDLIETKILKLRKRIENRQ LEPDMSLGINKIKKVVAFVIWVVLALIAAANFMWYFVPPTDFFSYIQNPLEHKYLFIFWL GITAFLIADIIFIKENFCIYMCPYSRVQSVLYDNDTIMTVYDYKRGGVVFDAKGIKLWKK PETPNAECTGCEACVKICPTHIDIRKGMQLECINCLECSDACTKVMAKLGKPSLISWTSP QAIEMRDKVRYMRFKTIAYVVALVVVFAGLLYMSSTKENMLLNINRNELYTIRDNNRVEN SYIFLFQNTNNKAYEFYFEVQGNPAIKIKRPSKPFKIEPREKFKQVVVLYTDENLSKDSQ KDTHIPLKIRAYALNSQEKIEVMRESVFIYPPSNVIKAK >gi|197283041|gb|ABQU01000009.1| GENE 23 22418 - 23392 792 324 aa, chain + ## HITS:1 COG:Cj1363 KEGG:ns NR:ns ## COG: Cj1363 COG0628 # Protein_GI_number: 15792686 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Campylobacter jejuni # 3 318 30 338 347 191 39.0 2e-48 MNLLIAFLLFIATQSIFQIILKKIKSEFFSSLLMTLLLLLLCFMPIFYVAINLASFATNV DLNGFQNIFALMQQKLINFSRQFFDYLPSAVQQEVESLLLRINSIDWAEIVKKILGFIAK LSANSIYFVSDAVFIVVFLFFFYFYGNKLGKYFIEVIPIDKQQIKSLYDEVSAVISVVFY SSILSMVLQGMLFGILMAFYGYNAILLGVFYGFASLIPVVGGTLVWLPVACYELYLGNFT NAIIITLYSIIVIATIADNGVKPFIIAFINRVLIEEPVKINEMLIFFAIIAGLSSFGFWG IVLGPAITALFIAMLRIYQNLYRG >gi|197283041|gb|ABQU01000009.1| GENE 24 23389 - 26031 2781 880 aa, chain - ## HITS:1 COG:Cj0775c KEGG:ns NR:ns ## COG: Cj0775c COG0525 # Protein_GI_number: 15792113 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Campylobacter jejuni # 12 880 4 870 870 1141 62.0 0 MQEKTNTTYNPKEIEEKYYRFWEESGYFEINGNEKIQKANKNFCIMLPPPNVTGSLHIGH ALNHTLIDIIVRYKRMQGFKTLWQPGLDHAGIATQNVVEKQLLAQGIKKEEIGREAFIQK VWAWKEQSGGMILKQMRKLGSSPAWSRTRFTMDEGLQNAVKEVFVKLYNEGLIIQDKYLV NWCTHDGALSDIEVEYKENNGKLYYLRYFLEDSKDYIIVATTRPETYFGDTAVMVNPEDS RYSHLIGKKVILPLLNKAIPIIADSHVDMEFGTGAVKVTPAHDTNDYEVGKRHNLEQITI FDKKGILNEFAGEFEGLERLEAREKIIAKLQETGFIEKIEDYKNQVGHCYRCGNVVEPYI SKQWFLKKEIAAKAIEKINANQSNFFPPQWKNNYNAWMKELRDWCISRQLWWGHQIPVFY CDSCSNKWASAKTQLQCPKCQSTNIHQDPDVLDTWFSSALWAFSTLGYGNGKWGEGTLWQ KDDLQNFYPNSLLITGFDILFFWVARMLMMGEHFLLELPFPNIYLHALVRDENGQKMSKS KGNVVDPLELIEKYSADVLRFTLATLCAQGRDVKLSSNQLEISKNFTNKLYNATNFLLLN AQKFPNLSDIQTPKTPLGKYMAELLSKTIQEVHQHLESYRFNDGANALYRFLWGEFCDWG IEFSKADKDSILELGAIFKESMLLLHPYMPFISEYLWHKLDGSTLEESGSIMVKPYPTFA YCDHSNLQIFELISDSIISIRRAKTTIELANQKIPKAYIKSNIAISKDFAPTFVKYVSKL AKVEEIEITSQKIPHCIVDITEKVESYIPIQEINLTPIISRLEKQQEKTQKEIIKLQSML KNEKFIANAPAQVLETNKKALIEQEEKLIKIQAELKSLKG >gi|197283041|gb|ABQU01000009.1| GENE 25 26200 - 26592 545 130 aa, chain + ## HITS:1 COG:Cj1075 KEGG:ns NR:ns ## COG: Cj1075 COG1699 # Protein_GI_number: 15792400 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 6 130 3 129 129 99 42.0 2e-21 MKGEKFVVKSPILGFEEVNEVEFAEVDNGALAFLSMIGNDAELLLINPYKVREYSFEVPA NIQALLDIKADSNVKVFCVFVREKQTEIRINFLAPIILNCDNHTLAQVILNAKDYPRFGV AESIKDYIKE >gi|197283041|gb|ABQU01000009.1| GENE 26 26598 - 28628 1986 676 aa, chain + ## HITS:1 COG:jhp0847 KEGG:ns NR:ns ## COG: jhp0847 COG0210 # Protein_GI_number: 15611914 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Helicobacter pylori J99 # 5 675 6 676 676 683 53.0 0 MPLSKLNIQQREASLAPSGYNLVIASAGTGKTSTIVGRISHLLESGITPNEILLLTFTNK AAQEMLARLELRFDSKIVKQIEAGTFHAVAYRYLKSKNSIILKQPRELKVLFKSLYDRRV FLNVSQTPPYGANYLYDLFSLYQNATINEDFSSWLEKRNAEQMQYVEIYLDVWEEFRNLK KEYHYADYNDLLIFYKEEILKDKLFFKEILVDEYQDTNPLQDSILQALNPPSIFCVGDYD QSIYAFNGADISIIGSFKERYPNGNIYSLTKNYRSTEPILNLANRVIEKNPRIYPKTLEV VKTQNFGMPTLLVYDELFLQYQGIANKIKLSNRPYKEVAVIFRNNSSADGIEASLREIGI PTRRKGGISFFDSKEVVYMLNLCSLLYNPKDMMSFIHVLSHIKGVGNAMAKDIYEALLVL GDGNPVSGILKPNKEIKEPYKKKIQNTQLGLFDDFFAMGNVARFSYLDSNFRDNPVLSHS KLTKEGAEFLNALYEFFSSFGVSDKPYYLISKVREFPIFKMVAQKLAKERAITKEGGISQ EKYQESLERIERKISLLRDLASHYQDIGRFLNAMILGSSEMSEGEGVNLLSIHASKGLEF SEVYIVDLMEGRFPNKKLMNQGGSLEEERRLFYVAVTRAKENLYLSYAKKDVMKNISYEG SIFLYEAGMLHKDRQV >gi|197283041|gb|ABQU01000009.1| GENE 27 28625 - 29998 1076 457 aa, chain - ## HITS:1 COG:Cj1190c KEGG:ns NR:ns ## COG: Cj1190c COG0840 # Protein_GI_number: 15792514 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Campylobacter jejuni # 1 455 2 457 459 273 37.0 6e-73 MKKLLSLGIAISLLGLILEAILYGLSFNLITFIALILLLGFSLLKFSKREALLQKSIKIS NLYSKGKFEARILQIQGDEDLCTLANNINNLADNLEAFMREISTAIRCSQEGKYYRLAFP QGLNPAFSNNIESINKALIKIEENAKNNLSNFLAKSLMDMSLGSQNENLTKISLDLDKDI QNMNTVDENITSITNSAKNSQKDVSSITQSIDELVEIINDNSITIESFAQKSKDIDSVVE IISDIANQTNLLALNASIEAARAGEHGRGFAVVADEVRQLAEKTHKATNDISIVVQTMQQ EISSIQDNFKRVSEFASSTHTSIMHFNSIFSYMEQTTNTLKEVFENLSNKFLLSVSKLEH IVYKSNLYLSFNLKQQTCDFNKINPISKYFDNKEKIQNINSLDINSLSILKDKFLKNTND ALVELKKPLTKESVDTIIDTFHTIEEDSKNVIKLLDN >gi|197283041|gb|ABQU01000009.1| GENE 28 29995 - 30522 500 175 aa, chain - ## HITS:1 COG:Cj1189c KEGG:ns NR:ns ## COG: Cj1189c COG2202 # Protein_GI_number: 15792513 # Func_class: T Signal transduction mechanisms # Function: FOG: PAS/PAC domain # Organism: Campylobacter jejuni # 8 166 4 162 165 182 54.0 2e-46 MKTMYGEEIFLKDDTLITSKTDLKGKITYGNNDFIKYGEYTENEFLNKPHNLIRHSKMPR TAFKLLWDTLANKNEFFAFVCNLSKTGKTYWVFANITPSYDENGKVVGYYSVRRRPSKEG VETIQSIYAKLLEIEKSQGVDKGVQFVQNLLKENNTTWDEFIINLQNKGKTGGYR >gi|197283041|gb|ABQU01000009.1| GENE 29 30744 - 31817 952 357 aa, chain + ## HITS:1 COG:HP0654 KEGG:ns NR:ns ## COG: HP0654 COG1060 # Protein_GI_number: 15645278 # Func_class: H Coenzyme transport and metabolism; R General function prediction only # Function: Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes # Organism: Helicobacter pylori 26695 # 9 352 10 360 360 445 61.0 1e-125 MSKNEIDMNDILNPNEAIKLYELDIFTLGKMADEIRQRYFGKKVFFNSNRHLNPTNECAD ICKFCGFSAHRKNPNPYTFTQEEALIQAQKAVEMGALEIHIVGAHNPKLDLQWYLELFRE LKTRYPQVSLKALTAAEVNFLSKISNKPYQEVLELMAQNGVDSMPGGGAEIFNEKIREYI CKGKVDSKRWLEIHGYWHSLGKKSNATMLFGHIESREHRIEHLLRLYEQQEKSGGFNAFI PLVYQKENNFLKVENFPSGQEILKTIAISRILLSNIPHIKAYWATLGLNLAMVAQEFGAD DIDGTIQKEAIQSASGSKSANGISKDELVAQICDAGFIPVERDSLYNEIKVYQTKGR >gi|197283041|gb|ABQU01000009.1| GENE 30 31819 - 32277 578 152 aa, chain + ## HITS:1 COG:Cj1370 KEGG:ns NR:ns ## COG: Cj1370 COG2236 # Protein_GI_number: 15792693 # Func_class: R General function prediction only # Function: Predicted phosphoribosyltransferases # Organism: Campylobacter jejuni # 1 143 1 146 147 132 43.0 3e-31 MQYYSYETFKEDIKELVLKIDFNPDGIVAISRGGLTMAHFLGIALDLRMVYSINASSFFN KVQQEIRISNIPELNGNQRVLIVDEIVDSGTSMAKVKNILQEINSNIDFKTASIFYKPTA TFKPDYFLRETGDWVDFFWEVDIVKEIRERKL >gi|197283041|gb|ABQU01000009.1| GENE 31 32280 - 32735 455 151 aa, chain - ## HITS:1 COG:jhp0397 KEGG:ns NR:ns ## COG: jhp0397 COG0735 # Protein_GI_number: 15611465 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Helicobacter pylori J99 # 6 146 5 145 150 153 59.0 9e-38 MKKYKESLKTILDRLHLSIKKNNLKNSKQREYILKAIYEDGGHLSPEDIFVSIKKTCKNA SISSIYRILSFLEKEGFVKSLEIDKSGKRYEIASGLHHDHIICVECGKIEEFCNEEIEKL QVEVTHSYKAKLVGHDMLLYVVCESCLAKTK >gi|197283041|gb|ABQU01000009.1| GENE 32 32921 - 33226 239 101 aa, chain + ## HITS:1 COG:Cj1384c KEGG:ns NR:ns ## COG: Cj1384c COG4378 # Protein_GI_number: 15792707 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 1 95 1 96 104 122 66.0 2e-28 MSVLVIGGDEITPIEAVLKNLGCEEVTHWDARRESVNHRGIPKNIACLVMLTNFLNHNTM KKFKNEAKKKDIPVICTKRSVSCLYCEFMKIFGKNCNSCKN >gi|197283041|gb|ABQU01000009.1| GENE 33 33314 - 34006 668 230 aa, chain + ## HITS:1 COG:Cj1491c KEGG:ns NR:ns ## COG: Cj1491c COG0745 # Protein_GI_number: 15792806 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Campylobacter jejuni # 12 226 8 222 226 111 33.0 9e-25 MSPDLLEPLGNLTILIVEDDEVALESLKVALERRCRKILAAKDGDEGLKFFKNNAVDIVI TDINLGSKTDGLSMVKSIRRINPNVPVIFMTAYSDDEKISQMIALNAVSLIKKEVDLEEL FVLLLSINKQLHKEHMVDLGRGVFYRKRDKVIVKGYAIFELTDRESQILELLIKADGYPI TYEEFRRKIWKNNSMTMDSLRMHINNIRRKTYYELIKNHSRLGYKIQKSS >gi|197283041|gb|ABQU01000009.1| GENE 34 34105 - 36039 1614 644 aa, chain + ## HITS:1 COG:jhp0544 KEGG:ns NR:ns ## COG: jhp0544 COG0744 # Protein_GI_number: 15611611 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Helicobacter pylori J99 # 6 644 4 660 660 701 50.0 0 MKVALRIFFAVCVVFVLAIIILISQLYLEIHDDTDKIVHYNPPLTTQIFDRKERLIANLF DKEFRFYAKFNEIPPRIIEALLAIEDTLFFEHPGVNLDAIMRAMLKNIKNASYVEGGSTI TQQLIKNVALTRDKTIERKLKEALLALQLETILSKEEILERYLNHTYFGHGFYGIKTASQ GYFKKDMQELTLKEIAMLVSLPRAPSFYDPTKNYDFSLARANNVLQRMEELGWITKEQLQ EGVAETPKVYDETLTQNVSPYVVDEVQRQLKNIEDLKTGGYKIYLNIDLDYQEMAQESLY FGYEQILSRHKNDEDMQTKLNGAFVVLENHTGNILALVGGVDYKKSNFNRATQSKRQIGS SVKPFLYLSAINSGLGQNYEIPDVTRTYEYKVEGEEKKWQPKNYTPIINGFVTLKEALRR SLNLATINLVEEVGFDRIYQGLLGYGFSNMPKDLTISLGSFGASPLEMAKNFMIFSNYGK VIEPRLFDRMVDNQGNITYFDTQSKDLAQPQQSFLLVDMMRGVVQNGSGRRAKVNGIELA GKTGTTNENVDAWFCGFSPSIEAIVWYGKDDNTPMGSGESGGIAPASAFSYFFEKILTID PGMQRKFNIPQGVHSKIIKGETFYYTDKSPLENSSSNIQEGIIF >gi|197283041|gb|ABQU01000009.1| GENE 35 36039 - 37742 242 567 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 334 561 2 234 245 97 30 2e-19 MKEFFKRFYPYIREYKLYFFYAIIGTILVAGASSASAYLVKPVLDDIFIKKDVAMLQILP FLVVLAYFSKGLGAYIQTYYMNFVGQDIVRRLKDILLNKILTFEMEFFNRYRNGELISRI TGDIGAVQGAVSNYFIEGIREGLTIVGLVGVVIYQSPELAFYGLIVMPLALYPISLIARK MRKASKKMQEKGADLSSKLIEIFNNIELIKASSGEKMEKDEFSRQNKELFRLSMKTVRVS ELTSPLMETLGAIAIAVVIIIGGHKVIDGEITTGAFFSFVTAVFMLYTPFKKVSSLYTKI QVAFAAGDRIFEMLDRKAKINDGEIRLTQKVKKIVFKDVDLFYGDKQALSQINMQINKGE SIALVGSSGGGKSSLVNLLLRLYEPNRGSVEINGQNIKDFTQESLRAKVAIVTQRIFIFN DSIARNIAYGSEIDEKRIKESLHRARILEYVESLPDGIHTILEEFGANLSGGQRQRIAIA RALYKNPEILILDEATSALDNKTEEEFRDALKEVIKDRIVIIIAHRFSTVSLASKIYFFQ NGKIVAGGTQQELMEKSESFRDYYKNI >gi|197283041|gb|ABQU01000009.1| GENE 36 37801 - 38760 921 319 aa, chain + ## HITS:1 COG:jhp0017_1 KEGG:ns NR:ns ## COG: jhp0017_1 COG0835 # Protein_GI_number: 15611088 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis signal transduction protein # Organism: Helicobacter pylori J99 # 3 187 4 188 188 296 76.0 3e-80 MSNLSNVDQITNLHRNNELQLLCFRLEKDKDLYAVNVFKIREVVKYRGEITIVSHEGSSL VEGLITIRELTIPLIDLKKWFYYDSRDKTKDLEPYGIKRNPGEDEVIMICEFSKWTVGVR IYEADRILNKKWTEIEQSAGIGNSGLNSKLVSRTRYFDGRLVQVVDIEKMLVDVFPWIED EKNEEIDKIKQIVTNNEVLLADDSPSVIKTMQNILNKLGVNYRTFVNGQKLLDYIFAEDT DISKIGIVITDLEMPEASGFEVIKQIKSNPLTAKIPVVVNSSMSGSSNEDMARSLNADEF ISKSNPIEVEDALRRFMIK >gi|197283041|gb|ABQU01000009.1| GENE 37 38955 - 41741 2883 928 aa, chain + ## HITS:1 COG:Cj0780 KEGG:ns NR:ns ## COG: Cj0780 COG0243 # Protein_GI_number: 15792118 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Campylobacter jejuni # 5 928 3 924 924 1500 75.0 0 MAQTRREFLKTAAAVSAASVAGIAVPPPQALMAKEAEESWKWDKAVCRFCGTGCGIMVAT KDGQIVAVKGDPAAPVNRGLNCIKGYFNAKIMYGQDRLTQPLLRVNAKGEFDKNGRFQPV SWQKAFDVMAEKFKEAYNELGPTGIGVFGSGQYTIQEGYASVKLIKGGFRSNNIDPNARH CMASAVVGFMETFGIDEPAGCYDDIELTDTIVTWGANMAEMHPILWARVTDRKLSNADKV RVVNLTPYSNRTSDLADTEIVFAPHTDLAIWNYIAREIVYNHPQSIDWDFVKNNCIFTTG FVDIGYGMRTNIKHAKYNPKELDTAAKEKSKVLSGNEGVTLRYLGMKAGDVMENKHAAEA GNHWEISFEDFKAALEPYTLDFVAKIAKGDSQESLDSFKEKLKTLASYYIDKNRKIVSFW TMGMNQHTRGTWVNEQSYMVHMLLGKQAKPGNGAFSLTGQPSACGTAREVGTFSHRLPAD MVVGNKAHREITEKIWKIPNGTLNPQIGAHFMQIMRDLEDGKIKWAWVHVNNPWQNTANA NHWIKAAREMDNFIVVSDAYPGISAKVADLILPVAMIYEKWGAYGNAERRTQHWKQQVLP QGNAMSDTWQIVEFSKRFKLKEVWGEKKINDKLTLPSVLDEAKAMGYNEDTTLFEVLYAN KEAQSYKTEDKMLKDSLNSEVFGDQREVVGSDGEIFRGYGFFIQKYLWEEYRKFGVGHGH DLADFDTYHRVRGLRWPVVDGKETQWRFNSKYDYYARKANNGDFAFYGSFGKELPRGDLK SPKTSEKYSLKNKAKIFFRPYMDPPEMPNEEYPFWLSTGRVLEHWHSGTMTMRVPELYRA VPEALCYMNPQDGEKLGVQQNDVVWVESRRGKVKARVDMRGRNRPPLGLVYVPWFDEKVY INKVCLDATCPISKQTDFKKCAVKVYKA >gi|197283041|gb|ABQU01000009.1| GENE 38 41747 - 42520 700 257 aa, chain + ## HITS:1 COG:Cj0781 KEGG:ns NR:ns ## COG: Cj0781 COG1145 # Protein_GI_number: 15792119 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Campylobacter jejuni # 7 257 4 246 246 261 51.0 8e-70 MDNKNPRRSFLIHTTQAIAMTLMGGLVWSAFLKESKANPLILRPPGALREEEFLKYCIKC GLCVEACPFDTLKLASAGSGKPIGTPYFIPREVPCEMCPDIPCVPICPTKALDVELVQSN GIMDINKAQMGVAIVDKEHCIAYWGIACDACYRACPLMGEAIKLELKRNERTGKHSYLLP VVESEVCTGCGKCEKACVTQKAAIIVMPRNVVLGEVGTNYIKGWDMQDEQRLENVKLRNI ENNNLQEVQDYLNDGEL >gi|197283041|gb|ABQU01000009.1| GENE 39 42547 - 43320 467 257 aa, chain + ## HITS:1 COG:Cj0782 KEGG:ns NR:ns ## COG: Cj0782 COG0348 # Protein_GI_number: 15792120 # Func_class: C Energy production and conversion # Function: Polyferredoxin # Organism: Campylobacter jejuni # 2 256 8 260 260 228 50.0 7e-60 MRRIVQIGLLCLYCLGNYAGIKILQGNLSASLFLETIPLSDPFALLQNFFSGALVGFNAL VGGLIILMFYGVFAGRAFCSYVCPMNLVVDLANFLHRILKINYAPISFNKNIRYVVLILA LILSSFFGMAAFEAISPIAMIHRGIVFGMGFGIFAVLLVFLLDLFVVKNGFCGYLCPLGA FYSLVGRFAFLKIKYDLNVCTHCMKCKVICPEKQVLGLIGKESGEVISGECTRCGRCVEV CGDNALGFNLLDFTKRK >gi|197283041|gb|ABQU01000009.1| GENE 40 43322 - 43846 608 174 aa, chain + ## HITS:1 COG:Cj0783 KEGG:ns NR:ns ## COG: Cj0783 COG3043 # Protein_GI_number: 15792121 # Func_class: C Energy production and conversion # Function: Nitrate reductase cytochrome c-type subunit # Organism: Campylobacter jejuni # 28 174 27 174 174 161 53.0 6e-40 MKFGTILVAGVSTLALILVSCKSIQSYSSEEIGLRKTTLFNEEAEIKAYDYTGKTAGEST LIERSFENAPPMISHNLDGMLPITRDNNACTSCHLPEIAEAVAATPMPKSHFYNFRENKN LDGQMDENRFNCVICHTTQVDAPPLVGNNFKADFRQEEGSSKSNLLDVINEGVE >gi|197283041|gb|ABQU01000009.1| GENE 41 43963 - 44358 224 131 aa, chain + ## HITS:1 COG:AGl920 KEGG:ns NR:ns ## COG: AGl920 COG1145 # Protein_GI_number: 15890576 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 11 128 42 158 166 66 34.0 1e-11 MECQKDCIRACDKVCQKGILRDYNGIPTVDFDIDGCKLCGECAKECPHGVLKEDNKSNWN FVVSIDELRCLGYQKTMCYTCKEVCQGVLGNQKAIEFVGVFYPIINENCIGCGFCVRVCP TKAIIIKEKNV >gi|197283041|gb|ABQU01000009.1| GENE 42 44351 - 45307 1016 318 aa, chain + ## HITS:1 COG:no KEGG:WS1171 NR:ns ## KEGG: WS1171 # Name: not_defined # Def: putative periplasmic protein # Organism: W.succinogenes # Pathway: not_defined # 1 318 7 319 319 223 41.0 1e-56 MFRIIGVFLLFLGSVFGLEPSYQLKMENNIIDVNYVENRLLVGTDFGEVIEVKFEKEFEN ITKKVVLKLPDISNFFGDFYPPKVFSVDFLEGRLLVNSEGSEGAKNLFVFKEQLEKLPIA LNIKKAAFVDKDKIFLGLMSNEILLYDLKDSKILYQKQLSEATFSDFTLSEDKKYFLVSC ESGILYYGKTLNGEILKEFSGLNKDNVYEAKMGFQGSDIVIIAAGQDRRVGVYFGNRMQD YTKEADFLVYSVGLSLDGKIGAYMKNEMSDIAVFEINGGKEMVILKGHKNLLNSIIFIDD KNIVSAEDGKNILFWKLP >gi|197283041|gb|ABQU01000009.1| GENE 43 45319 - 45705 477 128 aa, chain + ## HITS:1 COG:no KEGG:NIS_1802 NR:ns ## KEGG: NIS_1802 # Name: not_defined # Def: periplasmic nitrate reductase component NapD (EC:1.7.99.4) # Organism: Nitratiruptor_SB155-2 # Pathway: not_defined # 6 119 1 113 115 82 42.0 6e-15 MQEKNLNVSSLIVMCKPEDISRLWEEIEKIPNAQCHYSDKNGKIVVTLETESIDEEICLL RQIEKLQGVVLAQMIYAYHNAELEILQENIQRQDAVPEVLKNNKVKAEEIGYNGDVQGKL DDILKNVL >gi|197283041|gb|ABQU01000009.1| GENE 44 45752 - 46048 205 98 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310553|ref|ZP_04809708.1| ## NR: gi|242310553|ref|ZP_04809708.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 98 1 98 98 130 100.0 3e-29 MAKEKIKISGGTSGIIAVILTLVFGFIGAFFSWWLIARWNILKSFLYSFVFFLAFLVSVL LCFIFVGYILIPIVWIVMIIMVYQACSKSQIEVAEIER >gi|197283041|gb|ABQU01000009.1| GENE 45 46172 - 46561 412 129 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|154175415|ref|YP_001407462.1| NADH dehydrogenase subunit A [Campylobacter curvus 525.92] # 1 129 1 129 129 163 58 3e-39 MSHIDVAHPYFGVFAIFIFTFVAFFGTTLLSRFVGKTLANKNTQKLKLSPYECGLAPTKQ PNRISSQFYLMALLFILFDIEIIFMFPWAVDFKILGFFGFIEMVLFVLLLTIGFIYAWRK GALQWQSMK >gi|197283041|gb|ABQU01000009.1| GENE 46 46543 - 47052 747 169 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|154175216|ref|YP_001407461.1| NADH dehydrogenase subunit B [Campylobacter curvus 525.92] # 1 168 1 168 170 292 80 4e-78 MAEHEVKYLKNAGLPIALTSLDKLINWGRSNSLWAMTYGLACCAIEMMATGASRYDFDRF GTIFRASPRQSDVMIIAGTVTKKHAQFVRRLYDQMPEPKWVISMGSCANTGGMFNTYATV QGVDRIIPVDIYLPGCSPRPETLQYALMVLQQKIRKEKANRKNIPKRLV >gi|197283041|gb|ABQU01000009.1| GENE 47 47062 - 47862 873 266 aa, chain + ## HITS:1 COG:Cj1577c KEGG:ns NR:ns ## COG: Cj1577c COG0852 # Protein_GI_number: 15792882 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 27 kD subunit # Organism: Campylobacter jejuni # 1 266 2 264 264 254 51.0 1e-67 MREYKPKTNTQKQVYYKDRFYVPPKIPKEIVVDDILLGDLEQLSQKCFVVESYMQCGTLI IWVKKEDIYSCLEELKGLSYDVLTEMSAMDYLEKKGGFEIFYQLLSMDKKRRIRVKTFLK KEEQIQSVSMLFSSANWSEREMYDMFGILPQNHPYPKRILMPDDWVGHPLLKSYPLQGDE AAQWYEVDTIFGEEYREVIGKEQRDSARVDRYDTTRFSRLGYEVGYGEMIEEGQEKEKPI VYQEENGVLFVSKMKPENAKQLDKRK >gi|197283041|gb|ABQU01000009.1| GENE 48 47864 - 49093 1569 409 aa, chain + ## HITS:1 COG:jhp1184 KEGG:ns NR:ns ## COG: jhp1184 COG0649 # Protein_GI_number: 15612249 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 49 kD subunit 7 # Organism: Helicobacter pylori J99 # 2 409 3 409 409 607 69.0 1e-173 MQQPNKLMPFYENIAFDRINDNAMVLNFGPQHPSAHGQLRLILELEGEKVLKATPDIGYL HRGMEKMAENMIYNEFLPTTDRMDYIAASSNNYAFALGVERLLGVEVPRRAQVIRTMLLE LNRIISHLFWLATHALDVGAMSIFLYCFREREFGIDLIEDYCGARLTHSSIRIGGVPLDL PQDWCGKLKTYLDSLPKQIELYEGILSENRIWRMRLENVGVISPEMAKSWGLSGVMLRGS GIEWDIRKEEPYELYGELDFDVPVSYSNDSYGRYLLYMEEMRQSIRILYQLIEKYKDTDS LIMCEDGRYFSAPKEQIMTQNYSLMQHFVLVTQGMRPPVGEVYVPTESPKGELGFFIRSE GEPYPYRVKMRTPSFFHTGVLQDLLPGHYLADVVTIIGNTNIVFGEIDR >gi|197283041|gb|ABQU01000009.1| GENE 49 49090 - 49320 259 76 aa, chain + ## HITS:1 COG:no KEGG:SUN_2228 NR:ns ## KEGG: SUN_2228 # Name: not_defined # Def: hypothetical protein # Organism: Sulfurovum_NBC37-1 # Pathway: not_defined # 1 75 1 75 204 100 61.0 2e-20 MKRFDLRHLKNDFGGRLEEILQTQLQKGEVGIFLFEVIDFENVQKSADIVEKSGNELLNS LRFNEVDWTIVVRKVA >gi|197283041|gb|ABQU01000009.1| GENE 50 49322 - 50152 731 276 aa, chain + ## HITS:1 COG:no KEGG:Abu_2232 NR:ns ## KEGG: Abu_2232 # Name: not_defined # Def: hypothetical protein (EC:1.6.5.3) # Organism: A.butzleri # Pathway: not_defined # 33 274 15 262 263 100 31.0 4e-20 MEKQEFLEIYCKNGGIITPLESYLKKDDKTQSILLFGGFIQEFLEKIPHLKNQNNVFLLS PLNFNPAPNIRQFLYEVGCEEVVLALLAESLLKQDDTQEKQWIKDLDVGYLASEVNFSEE EIMAISQSFVESTKGVLIIGKDIYGHKRASNIAKILGLLAKNPKIEIVFLDEVWVQAVEQ IEEIAKLGEIDNFDGLVAYVHFDEGLEYPILQASRQFALVGKIANGDTIEIEFANQKIKA NFCEQQEIKGMVGILWLSKQEDIGFCYQKIRVNRIS >gi|197283041|gb|ABQU01000009.1| GENE 51 50152 - 52602 2405 816 aa, chain + ## HITS:1 COG:Cj1573c KEGG:ns NR:ns ## COG: Cj1573c COG1034 # Protein_GI_number: 15792878 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) # Organism: Campylobacter jejuni # 4 788 1 784 820 554 41.0 1e-157 MGMVKIKIDGCEIFCKEGESILNAARANDIFIPAICYLSCCSPTLACKMCMVEADGKRVY ACNAKVKDGMEVIVNTIEIEQERYAIMQAYNVNHPLQCGVCDKSGECELQNYTHYVGIKE QKYALRDDYKALNHWGKTAYDPNLCIVCERCVTLCKDKIGKSHIKAIKFDGQLPNKEYKE SMPKDAFGVWTKFKKSLIGVSGEGDCKDCGECASVCPVGALGIAHFQYKSNAWELEKIPS TCVHCGNGCALTYEVKQEGISGDRRKIYRVVSDWNFATLCPAGRLVFDENHQGITKDKEA FNAAIAAFKEADSIHFAGNITNEEAMILQKLKQKYGYHLVCDEVWGFQQFIQEFSKGGSL GKATQKEITQSTFVMCFGGAMSYDMPVVTHSINNAMKQNKGAILAYFHTMEDCVAKEFVK PANLIEAYYKPDSEEAFALLLASVCIAKENMPLALKNQIEKYERKITKEIPKEVKSIVEI PQIDENGNEVLIKKEEIKQVLEQVEELSSELIEYCVKDSTLELENLKRTISISKNPILVV GFDIYRAKNAKNIARILACIEMHSEVKILLLPPTTNALGISLLCDLEQASKGYSIGYNAK GDFTIGVEDNNALIMPYLREQEGTFVNVDKRVVPISPAIPYKGYELNDIAKELGLQLENT IDYTLELPLQKGFKSVEYDDLGYGFLNDGTEIRGYLLEPLLVQEEVEVEAVELEELKAYN LYARNAMAHFSKETLNSQYLDSKNGLQMSEKLAKKLGLESGDCVEIDFGDSMVLQREVTI DNEMEGDIAALGVCGLEEFEYFPNSRYQKVQLKAIK >gi|197283041|gb|ABQU01000009.1| GENE 52 52599 - 53606 1109 335 aa, chain + ## HITS:1 COG:jhp1188 KEGG:ns NR:ns ## COG: jhp1188 COG1005 # Protein_GI_number: 15612253 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 1 (chain H) # Organism: Helicobacter pylori J99 # 1 331 1 328 329 420 67.0 1e-117 MIGFIIETLIKVILVVLIFSALAGFATYIERKMLAFFQRRLGPMVVGPFGVLQILADGIK LFTKEDIVPSGANRLIFRIAPVITAATAFIAMAPIPFFPEFEIFGRVVQPIIADINVGIL FVLGVGAAGLYGPLLAGISANSKYSLLGAARTAIQLLSFEVVSGLSLLAPIMLVGSLSLI DINNYQEGSITNWLIFSQPLAFVLFLFAGYAGYAELNRTPFDLLEHEAEVVAGYATEYAG MRWGMFFIGEYANMISLSFVISLLFLGGFNPLWFIPGGIAILLKVMFFIFLFMWARAAYP HIRPDQLMGLCWKVLFPLALLNIVITGVVVLGGEM >gi|197283041|gb|ABQU01000009.1| GENE 53 53633 - 54217 508 194 aa, chain + ## HITS:1 COG:Cj1571c KEGG:ns NR:ns ## COG: Cj1571c COG1143 # Protein_GI_number: 15792876 # Func_class: C Energy production and conversion # Function: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) # Organism: Campylobacter jejuni # 4 193 15 203 213 209 57.0 3e-54 MPNLSNSQKFISFWNRALKGELFVGLWLVLKEFCKAQIHTVQYPLEKLPLSPRYRAVHEL KRLLESGNERCIGCGLCEKICVSNCIRMETGYGEDKRKKVFEYTINFGRCIYCGLCAEVC PELAIVHGKRYENASEQRASFSLKEDMLTPMDKVLKGGDSEFEGVGSVSVDADLKIKATP LEYCKKQEQEVENV >gi|197283041|gb|ABQU01000009.1| GENE 54 54210 - 54773 723 187 aa, chain + ## HITS:1 COG:jhp1190 KEGG:ns NR:ns ## COG: jhp1190 COG0839 # Protein_GI_number: 15612255 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 6 (chain J) # Organism: Helicobacter pylori J99 # 1 162 1 162 182 145 58.0 5e-35 MFEAIAFYTFSALTLAMFLIVVTTKNILYALSALAAGMIFVSGFFFLLGAEFLGVVQIVV YTGAVIALYAFAMMFFDAQKLQNERIENPKLLFLLVGLGALLLVLIVVAPIIAQNLSQIS PQIPVKEEVGNVQMVGYVLFTKFLIPFEIAAIMLLVAMIAGIILAGKGMRYSLTLGESEE NQVKEKK >gi|197283041|gb|ABQU01000009.1| GENE 55 54770 - 55072 355 100 aa, chain + ## HITS:1 COG:jhp1191 KEGG:ns NR:ns ## COG: jhp1191 COG0713 # Protein_GI_number: 15612256 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) # Organism: Helicobacter pylori J99 # 1 100 1 100 100 112 62.0 2e-25 MIGLNHYLIVAALMFVVGAFGMLRRKNLLMLFFSTEILLSSVNVGLVAVGYYLGDLNGQL FAFFILAVAASEVAVGVGLLIAWYKKYHTLDLDALQIMKG >gi|197283041|gb|ABQU01000009.1| GENE 56 55076 - 56935 1149 619 aa, chain + ## HITS:1 COG:jhp1192 KEGG:ns NR:ns ## COG: jhp1192 COG1009 # Protein_GI_number: 15612257 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit # Organism: Helicobacter pylori J99 # 4 611 6 610 612 601 59.0 1e-171 MEVILYTALFAPLIGSVFGIPFGAKRKFLFVGVFASLMLFVSFVASLLLLVYVYQGGVLE VVMMDWIGAGRLYIPFGFLIDSVSATMVFVVTLVSLCVHIYSIGYMNNDKNFNRFFVYLS AFVFSMLILVMSDNFAGLFIGWEGVGLCSWMLIGFWYERDSASFAANEAFVMNRIADLGL LLGIFLIYWVFGTLSYEVVLSSVYEAPKGILIAIGILLFIGAMGKSAQFPLHTWLADAME GPTPVSALIHAATMVTAGVYLVIRANPLYSIIPEVSFGISVLGAFVAVFAASMALVNRDL KRIIAYSTLSQLGYMFVAAGLGAYWIALFHLATHAFFKSLLFLGAGNVMHAMNDKLDITK MGALYKPLKYTAILMILASIALAGIYPFSGFFSKDKILEAAFGSGAYVLWGMLLFGAFLT AFYSFRLIMLVFFGEKKHQEHPHEAYSFMLYAMLPLGILAVFGGFLEPFFHHFVMQTLPE FSANLSAKIVWILIGITSCVALSGIFFAVWKYSKGGFSKKWEKNLFYRLLVNQYYIPKVY ECVFIRNYQRLSKMCWLYIDKKIIDFIVDKIAYMLSDSGEKLKWIQSGNLSKMLQIMFFG LVFLLLLVFIYREGVWIIF >gi|197283041|gb|ABQU01000009.1| GENE 57 56920 - 58458 1276 512 aa, chain + ## HITS:1 COG:jhp1193 KEGG:ns NR:ns ## COG: jhp1193 COG1008 # Protein_GI_number: 15612258 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 4 (chain M) # Organism: Helicobacter pylori J99 # 3 485 7 489 512 390 50.0 1e-108 MDHILTLLILFPFFGALLAIGIKENLRAYGIIIGVIELILSLFLWIFFDKNVDGYQFIVS FPLVANFGVNYLVGVDGISLFLIILSALISFLGFVYLNEQREIKKLVISLLCLESIMIGV FCALDVILFYIFWELSLVPMLYIIGAWGSGNRIYAAIKFFLYTFFGSLIMLVGILFLAYY YFEVSGVWTFSLLDWYSLEAIPKDIQIWLFLAFFCGLAVKVPMFPFHTWLPYAHGQAPTI GSVVLAAVLLKMGTYGFVRFSLPLFPDASVALLVPMAILALIMIVYGAMVAFAQEDMKQV IAYSSISHMGVIMIGIFALNLEGVTGSVFFMLSHGVISGALFMLVGVIYDRRHTKLISEF GGLAKVMPNYAVIFGIMMMASAGLPLTMGFVGEFLSLLGFFEVSPIAAGIAGLSIIVGAI YMLHLYKRVFYGQLQNDENRKLKDLDSRELSALLPLVVIVIWLGVYPKPILEPINKGVEN MFSIMYSHIDTDEVKAFFKLENLENPLKLEDK >gi|197283041|gb|ABQU01000009.1| GENE 58 58458 - 59939 1435 493 aa, chain + ## HITS:1 COG:HP1273 KEGG:ns NR:ns ## COG: HP1273 COG1007 # Protein_GI_number: 15645887 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 2 (chain N) # Organism: Helicobacter pylori 26695 # 1 484 2 489 490 391 46.0 1e-108 MLEVFRISLESLNFFSIIPMLIAIAGAIIILVADLCIAKINKQFYAMLAILFLLMDLGYV VLFEGYYRAFFDLILIDGMSILAQTIILVAAILFLPLTLSYNKFHEFQYAEYYSLFLFMC VGFQFMVSSDHLIVIFLGLETASLALYALIAMHNRKTSFEAAIKYFAMGSLSAACFAFGA MLLYAASGHLDIQNIKIVLEQNNFQPSYLVLGAVVFMVVAIGFKVSLVPFHTWTPDVYEG SNSFLAGFMSIVPKIAALVVAIRIFSVFMDIVWVHNVFYLLIVITITLPNLVALVQRDVK RMLAYSSISHAGFAFSMILIGGMQAFSALFMYWILFLFTNLGIFAMLWISRTKEQIWDKR YDHSYEKFSGLVKLSPLVAVIIGIFMLSLAGIPPFSVFWGKVYLMSAAVNNGYLFLAVVM AINSAIAAYYYLKLIVYMFLREPIVQNSSIYLQNATLPLKIVVGIAVLYVCFSSVLVDGI LYWVYGLIGIDIL >gi|197283041|gb|ABQU01000009.1| GENE 59 59953 - 60480 486 175 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310568|ref|ZP_04809723.1| ## NR: gi|242310568|ref|ZP_04809723.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 175 1 175 175 308 100.0 6e-83 MPKPHLLIAIFAIGSILITSCSQKQQNSIATITTPIVSYQINSISAGQFNDLQITNEQIL PSLKNALQQTNCFIESNNNPLYNLKLVYGSIATKNTQGGFWSSTSKDSAIIELQIAFTDK NEERIFTSKAFFENTKDHYLGLGDSSKLQPQHIQDTLLNAIHSIANQAAQNFMGF >gi|197283041|gb|ABQU01000009.1| GENE 60 60579 - 61253 559 224 aa, chain + ## HITS:1 COG:no KEGG:WS1936 NR:ns ## KEGG: WS1936 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 25 211 35 221 246 95 36.0 1e-18 MGIVLKRGLLILHIILLFCLGVGVFYCYSSIKEVFKTQETLVYYVNISGKQRVLAQRIVF LSQVVSTNYILKHNNHEEIAELRSCISQLTNIHSILQNFVVSMVVTNYKNSTLDDIYFGS GNLSVKMENFLNSANKIFFINNVSEILVNNQELLNGLEGDNGLLASLELATLSQQFYAQN QLKEMYKQIEYFLLFVVCFIILEAILFLIVPKNQIFKNEYKEGK >gi|197283041|gb|ABQU01000009.1| GENE 61 61217 - 61744 425 175 aa, chain - ## HITS:1 COG:HP0737 KEGG:ns NR:ns ## COG: HP0737 COG1267 # Protein_GI_number: 15645357 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Helicobacter pylori 26695 # 17 166 6 154 158 129 51.0 3e-30 MKNKNFFLDFKDTKDFLQKMYLTLFFSGLSPKAPGTIGTIVALPFGWAISYYIAPSTLLL LALLLGAIGIKIIDNYEKQGLSHDRKEIVIDELAGVWISIAMIGHSLFALFLSFILFRIF DIWKPSIIHRVDKNVKGGLGVIGDDLLAGFFAGILGLIILKALYYFPSLYSFLNI >gi|197283041|gb|ABQU01000009.1| GENE 62 61752 - 62951 695 399 aa, chain - ## HITS:1 COG:Cj1609 KEGG:ns NR:ns ## COG: Cj1609 COG2046 # Protein_GI_number: 15792914 # Func_class: P Inorganic ion transport and metabolism # Function: ATP sulfurylase (sulfate adenylyltransferase) # Organism: Campylobacter jejuni # 1 394 1 381 386 259 35.0 6e-69 MESQRKNKSLFIDKEALFALMLCKEGLLYPLTHLMNQQEMEEVDKNGLYNSQTFPFSFIL APSGKRNQEVIQNLKKGEVVDLVYNYEICGQLITDSIFPIDKKQRLFKIMSGDIYSQKAK NIYNRLGNFAICGDYTLYIKDNLFADRISKEKILHAKKNLQTQNATSIVLDASPVTRIHE RIFRLILEEDTLLVLLLLRKQNEDILSFEIRKQCLEYIIENFLPKNRIIIFPLDDIYLFA GAHGILLDAILSQNLGCNKMVIGETYPNLAIYYDKQKIYSIFDTTKDIKIKIQLLSEFVY CQQCSTIVSIKTCPHGKHHHINYHSRFIQGILQSGLIPPTILVRKEISAKILSHLFPNRF NTLIKQFGTMFAESGIISEQSEEDFYIKLANLYKTHSLN >gi|197283041|gb|ABQU01000009.1| GENE 63 62929 - 63816 742 295 aa, chain - ## HITS:1 COG:Cj1608_1 KEGG:ns NR:ns ## COG: Cj1608_1 COG0784 # Protein_GI_number: 15792913 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Campylobacter jejuni # 1 113 1 111 118 96 60.0 6e-20 MEILIIENEIYLAQSISSKLSHFGFNCEIIPSMQEALEYDNADIILLSTNISGQNFYPLI EKFKNSIIILMIPYINDETVTRPLQAGASDYIVKPFMIDELIRKIKQHTIFKQTQKEIAF YRDYFCNSLLTPSYQINTKISFPLIIKSISQKAIDMCVVNYTIHKKLQINFISLYKNKNY QESLKHLPKQQLTYIIGFEILQKSEKEECIKMLKNTPAILSCLGGETDDFSNVYELQVQE ISQGFQDILSIDEYVKTMILKFENKYPDTELSKKLGMSRKSLWEKRKKYGITKKK >gi|197283041|gb|ABQU01000009.1| GENE 64 63825 - 64985 918 386 aa, chain - ## HITS:1 COG:Cj1607_2 KEGG:ns NR:ns ## COG: Cj1607_2 COG0245 # Protein_GI_number: 15792912 # Func_class: I Lipid transport and metabolism # Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase # Organism: Campylobacter jejuni # 209 380 1 172 175 166 46.0 1e-40 MTHCVALILLGAGDSNRFKKYKVPKKQWLRVGDIPLWLKVAQEVSNYYPFSKLILSAKEE ELQYMQKYLDSLELNFILTKGGSTRQESLQNALMEVKEEYVLVSDIARCNTPQKVFQNIL EQIKNFDCVVPFLNIPDTIAYADDKTLQYLKRENLKIIQTPQLSKTNILKQALQKGNFTD ESSAIANFGGSIGFVQGSPKARKITFIDDLDSMQLPPPSTKTIIGNGSDIHALKSGNGII LGGISIPCDFELIAHSDGDVCLHAISDAILGGIGAGDIGEWFPDNNNAYKNADSALLLKK IVDFSINVGYQITQADITIFAQKPKLSPYKNAMEKRISEILEIPLFSVNVKATTTEHLGF IGRGEGIMVQATLALTYFDWKNYHFK >gi|197283041|gb|ABQU01000009.1| GENE 65 65058 - 66701 1928 547 aa, chain - ## HITS:1 COG:PA2573 KEGG:ns NR:ns ## COG: PA2573 COG0840 # Protein_GI_number: 15597769 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Pseudomonas aeruginosa # 169 547 157 535 535 156 28.0 8e-38 MIGKNLSLKNQLFIGFGIILAFIIIIAITGYIKIKFVNDTLTEISEINSVKQRYAINFRG SVHDRAIAIRDIILLNDPKDLENTLKEIKNLEDFYQDSAIKMDDIFKNPNMVDSKDKEIL TRIKGVEQSTMPLILNIIELKAQGNTPQAEALLLSKARSAFVNWLDVINEFIDHQEAKNQ SLTNVARQEIQNYLDITIWLAGIAFVIAIFIASYITRLIISSLGGEPKEAVKVVLSIANG NLNTPIQTNFKDSMLASVEQMQIKLKEIVSEVVHSSKELNEHANEVAKSSEEAKVSSYQQ LSKSEDSVKKIQQVVDAVNHVSKIAKQTEENSEYTTTLSNKGIDAMKTTINEIEKITQTV SSSSEHIRMLEKHSQEISGSAELIKEITDQTNLLALNAAIEAARAGEAGRGFAVVADEIR KLAERTGVATSEIARMIEVIQNETQTAVEAIQTAVPQVEKGMQLANEASEILDQINSQAT DSLNKAKEVTDAAQNQVENMETLANELQDISTTSRHTANSMENNTESAKTLKEISSILTN HIEHFKI >gi|197283041|gb|ABQU01000009.1| GENE 66 66772 - 68067 833 431 aa, chain - ## HITS:1 COG:Cj0991c KEGG:ns NR:ns ## COG: Cj0991c COG0247 # Protein_GI_number: 15792318 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Campylobacter jejuni # 9 424 3 421 421 420 50.0 1e-117 MAHFENYNYLQTSDACVKCGKCLPDCTIFNINGDEATSPRGFIDLLGAYQRKEIELDKNA KEIFEKCFLCTTCVNVCPNSLPTDTLIENIRYELAQKYGITWFKRLFFFLLKHRKIMDLS MKMGSLFAPLLFKKTSDKSSIKPRFKLPFIHNRIFGAIQSKSFLNSHKEYLIYNNKPQKV AIFIGCLSNYNYKNVGESLIFILEKLGINTMIPKKQKCCGAPAYFTGDFESVNHLIIENI EYFESFIDEVDAILVPEATCAAMILEDWEKFMAKNPAYQERIKKLLPKIYMATQWLSNHT NLKEKLSSLPFNTKDTFTYHDPCHARKVLNIWKEPRELLNQNYSLIEMEDSNACCGFGGV TMQTERFNLASKVGQKKAQMIGKTQAKYVVAECSACRMQLSNALHQENINTTFIHPLELI CKALKNDTMQI >gi|197283041|gb|ABQU01000009.1| GENE 67 68076 - 69443 1241 455 aa, chain - ## HITS:1 COG:Cj0992c KEGG:ns NR:ns ## COG: Cj0992c COG0635 # Protein_GI_number: 15792319 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Campylobacter jejuni # 5 455 3 451 451 561 60.0 1e-160 MQEIDFKKFAKFSKPGPRYTSYPTAIEFSEAYTYDSYINDLQNDTSPLSLYIHLPFCRSA CYFCGCNVIYTSKEENKTLYLKYLKKELEILKNTLNCNKEVYQLHFGGGTPTFFNAKELE ILITMLKNTFPNFDKEAEIACEIDPRFFTKEQMEVLKNGGFNRLSFGIQDFNPKVQEAIH RIQPFELVESAISTAREYGITSINFDLIYGLPYQTLKSFQETLKQCLNLNPDRFAIFNYA HVPWIKKTMRKIDETTLPTPEEKLNILKTTIHTLQSCGYKMIGMDHFAKSNDELFKSIQK GQLRRNFQGYSTKGGTQTIGIGLTSIGEGVDYYAQNYKDLPSYQNAIDKGILPFFKGIKL SLDDKIRKAVIMQLMSNFQLNFKNIEEQFNISFEDYFRDSLKELEIFEQEDLITLSKEGI KVSQTGTLLIRNIAMAFDSYLKKINPTQNVFSKTI >gi|197283041|gb|ABQU01000009.1| GENE 68 69460 - 69894 303 144 aa, chain - ## HITS:1 COG:no KEGG:CFF8240_1572 NR:ns ## KEGG: CFF8240_1572 # Name: not_defined # Def: hypothetical protein # Organism: C.fetus # Pathway: not_defined # 45 137 45 139 145 63 36.0 3e-09 MATPKPLINHIKQDNLEILKQAIIEAKNNTIILPTPLNKIIDEESLPYCFKDSNNEEYYL LPSHIIKTLLESAKKLQRDKYLFQLEQEIHKNMPIDFEDVWCIAIKEIGKNFQKDPKRLI KNIRKRYPYLFIDFQNFNPLQNPL >gi|197283041|gb|ABQU01000009.1| GENE 69 69873 - 70793 906 306 aa, chain - ## HITS:1 COG:Cj0994c KEGG:ns NR:ns ## COG: Cj0994c COG0078 # Protein_GI_number: 15792321 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Campylobacter jejuni # 1 306 1 303 306 328 55.0 6e-90 MRHFLTLADFSKEEILEILQIAATLKKDLKAGKTSNLLEKKTLGMIFEKNSTRTRVSFET GIYQLGGQGIFLSSNDTQLGRGEPIKDTARVLSSMVDLIMMRTHEHSRLEEFAHYSKIPV INGLSDSFHPMQLLADYLTMQECQKDQNPIVAYIGDGNNMAHSWLMLAAKLGFELRIASP KGYEVCQKIFQKAQEFAKISGAKLILTQNPQEAVLNADVITTDTWASMGQEREKETRKKA FEGYCVDKNLMNLSKKDSIFLHCLPAYRGQEVSEEVLESTQSKIFLEAENRLHAQKGVMV WLHQNR >gi|197283041|gb|ABQU01000009.1| GENE 70 70908 - 71252 343 114 aa, chain + ## HITS:1 COG:Cj0627 KEGG:ns NR:ns ## COG: Cj0627 COG0375 # Protein_GI_number: 15791987 # Func_class: R General function prediction only # Function: Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) # Organism: Campylobacter jejuni # 1 114 1 114 114 89 49.0 1e-18 MHEFSIVSSLLENCRQVARENGASKIMEVYVQIGRRSGVNASLFKRAFEEFKVGEICQNA ELFIEEVEVEIFCKNCKQESKIVEICYTQCPLCKSEQVEMIRGNEMLLMRLVME >gi|197283041|gb|ABQU01000009.1| GENE 71 71230 - 71706 429 158 aa, chain - ## HITS:1 COG:Cj0904c KEGG:ns NR:ns ## COG: Cj0904c COG0219 # Protein_GI_number: 15792234 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Campylobacter jejuni # 4 152 2 153 155 154 48.0 8e-38 MQRFHIVLHQPRIPQNTGNIGRLCFASNSILHLIYPLGFHLTQKELKRAGMDYWQHLEVY EWENLESFMSSSLLNLPHFYLTTKTQKPYYNANLSKGAYLHFGREDAGLDTKILQAKQQD CYTIPMQNNARSLNLATSVGIVLYEGIRQRDFIPLQDA >gi|197283041|gb|ABQU01000009.1| GENE 72 71710 - 72051 257 113 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310581|ref|ZP_04809736.1| ## NR: gi|242310581|ref|ZP_04809736.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 113 1 113 113 181 100.0 1e-44 MCYNSSFGGIMPNKQEEIEAIKLNIIKYHLSNFCKRNSRTLGLLFKALIQSEKTNHIQKT ANHTTPPNTKTSPKSSTKKTQTNQNIPNKTDTIHLEELKLDIPTPKPPLNIEG >gi|197283041|gb|ABQU01000009.1| GENE 73 72052 - 72528 646 158 aa, chain - ## HITS:1 COG:RSp0203 KEGG:ns NR:ns ## COG: RSp0203 COG1607 # Protein_GI_number: 17548424 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Ralstonia solanacearum # 13 157 8 152 164 191 63.0 4e-49 MDNMENVFDIKSLTMTVLMTPAMANFKGRVHGGDLLKLLDQVAYACASRYCGKYVVTLSV DSVTFKYPIEVGSLVTFLASVNYTGTSSLEVGIKVIAENIHKRIVTHTNSAYFTMVCVDE NGKPTSAPKLEPKTEAEIRRYNNAMKRKQARIELSKKK >gi|197283041|gb|ABQU01000009.1| GENE 74 72717 - 73796 732 359 aa, chain + ## HITS:1 COG:Cj1039 KEGG:ns NR:ns ## COG: Cj1039 COG0707 # Protein_GI_number: 15792366 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Campylobacter jejuni # 1 342 1 322 342 280 46.0 3e-75 MKVVITGGGTGGHLSVAKAFLEEFDKRGYECIFVGSMGGQDRVYFGDDNRFAKKYFLQTK GVVNQRILGKIGSLFQHFKAFIEALKILKQERVDFVLSVGGYSAAPAAFGAVFLRLPLII HEQNARIGRLNNLLKPYAAVFFSSYLETSPIKFYPVRKEFFEYSRVRERVDKILFIGGSQ GARAINNFALSMAMDLQKRGIKIFHQCGKNDFQRVLEEYHKLPLKIKILETMEDLKDDFD VLLFDFSKNMPKIFEACDFAVSRAGASSLWELCANGIVTLFVPYPYAAGNHQYFNAKFLE DKELGFLCEEKDLYCDVLWNILELLTQRTLSKMSRELQRETHIGATGQMVDCILERIKK >gi|197283041|gb|ABQU01000009.1| GENE 75 73825 - 74316 726 163 aa, chain - ## HITS:1 COG:HP0391 KEGG:ns NR:ns ## COG: HP0391 COG0835 # Protein_GI_number: 15645019 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis signal transduction protein # Organism: Helicobacter pylori 26695 # 1 163 1 165 165 196 58.0 2e-50 MSNQLRDVLQKQQEQKKPNTETENIIQLVAFVVGSEEFAVPILSIQEIIKPLEYTRVPGV PNYVLGVFNMRGWVVPLINLRLKFGLPYEKPTEDTRYIVIKNQEERAGFIIDRLTEAVRI KESDIDPTPETISQDENLIYGVGKRDDRLITILRPEELLKRTF >gi|197283041|gb|ABQU01000009.1| GENE 76 74316 - 76739 2880 807 aa, chain - ## HITS:1 COG:jhp0989_1 KEGG:ns NR:ns ## COG: jhp0989_1 COG0643 # Protein_GI_number: 15612054 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis protein histidine kinase and related kinases # Organism: Helicobacter pylori J99 # 1 654 1 663 663 775 66.0 0 MDEMQEILEDFLIEAFEMIEQLDQDLVELENRPEDLELLNRIFRVAHTIKGSGSFLNFSV LTHLTHHMEDVLNKARHGELTITPDIMDVVLESIDFMKKLLNAIRDTGTDANTGLDSDIA NVVARLDAISKGESPQDIPASQESSTTQEAPQSQAPQEASNNAQEEVDYSNMSPEEVEKE IERLLNQRQEEDKKKREEKRAKGELQDIQAPSEIEQTPNATPAAKAPESQKQPEVNATPA KQTEAKPQIKPRQEENKTLATSVEQTIRVDVKRLDSLMNLIGELVLGKNRLIKIYNDVEE RYEGEKFLEELNQVVASVSMVTTDIQLAVMKTRMLPIGRVFNKFPRMVRDLSRELGKNIE LVISGEETELDKSIVEEIGDPLVHLIRNACDHGIESKEERIAAGKKEQGTVELKAYNEGN HIVVEITDDGKGMDPATLKAKAIEKGIIGEREADTMTDREAYSLIFKAGFSTAKVVTNVS GRGVGMDVVKTNIEKLNGIIDVDSTYGEGTTLKLKIPLTLAIIQSLLVGVQEEYYAIPLA SVIETVRISQDEIYTVENKSVLRLRNEVLPLVRLADIFGVDSVFDNSEQAYVVVIGLAEN KIGVIVDFLIGQEEVVIKSLGSYLKGTEGIAGATIRGDGRVTLIVDIAAMMQMAKQVKVS VTKLAQENEKKKEKNSPSDYNVLIVDDSMTDRAIMKKSLKPLGISVSEATNGMEALDIVK NGDKAFDAILIDIEMPKMDGYTLAGEIRKYAKFKNLPLIAVTSRTSKTDRMRGVESGMTE YITKPYSPEYLMNVVKRNINLTMEVTE >gi|197283041|gb|ABQU01000009.1| GENE 77 76766 - 77731 967 321 aa, chain - ## HITS:1 COG:Cj0285c_1 KEGG:ns NR:ns ## COG: Cj0285c_1 COG0835 # Protein_GI_number: 15791655 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis signal transduction protein # Organism: Campylobacter jejuni # 8 175 5 171 177 243 72.0 3e-64 MSNLEKNDTLKIGTNEMELVDFRIYKVEKGKIYEGIYGINVAKVNEIIRLPELTELPGVP DYIEGIFDLRGVVIPVINLAKWMNVETPKNKKIKPRVIIAEFNNIMIGFIVHEAKRIRRI NWKDIEPAHFSSSVSSNLDKSRITGVTRIEGDQVLLILDLESIVQDLGFYHPEVNSEHTY EKFEGLALILDDSSIARKILKEFLEKMGFDVAEANDGEDGLRKLDKLYENYGETLGKQLK IIISDVEMPQMDGFHFAAKVKEDPRFSKIPIIFSSSISDKFSESRGKEAGAESYLVKFDG NKFHEEVSRVVNKYNQELENA >gi|197283041|gb|ABQU01000009.1| GENE 78 77731 - 78024 147 97 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310587|ref|ZP_04809742.1| ## NR: gi|242310587|ref|ZP_04809742.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 13 97 1 85 85 138 98.0 1e-31 MNRFSRFLYPKILQYLQNKKNLTFHYSDDFIQNRIRNYKNKYPITDNSYIIEGHFHLGKT QNIDSINYIGLPLFACKKSYFIVEFYNYYLCFKSKEF Prediction of potential genes in microbial genomes Time: Tue May 24 02:02:34 2011 Seq name: gi|197283040|gb|ABQU01000010.1| Helicobacter pullorum MIT 98-5489 cont2.10, whole genome shotgun sequence Length of sequence - 6650 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 3, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 298 209 ## COG2908 Uncharacterized protein conserved in bacteria - Prom 355 - 414 5.1 2 2 Op 1 . - CDS 428 - 1438 914 ## COG0002 Acetylglutamate semialdehyde dehydrogenase 3 2 Op 2 . - CDS 1490 - 1687 357 ## gi|242310590|ref|ZP_04809745.1| predicted protein 4 2 Op 3 . - CDS 1722 - 3026 1392 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) - Prom 3261 - 3320 7.7 + Prom 3050 - 3109 8.9 5 3 Op 1 19/0.000 + CDS 3142 - 3906 1033 ## COG1291 Flagellar motor component 6 3 Op 2 . + CDS 3925 - 4749 823 ## COG1360 Flagellar motor protein 7 3 Op 3 . + CDS 4758 - 5513 584 ## COG1338 Flagellar biosynthesis pathway, component FliP 8 3 Op 4 . + CDS 5513 - 6622 985 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Predicted protein(s) >gi|197283040|gb|ABQU01000010.1| GENE 1 1 - 298 209 99 aa, chain - ## HITS:1 COG:HP0394 KEGG:ns NR:ns ## COG: HP0394 COG2908 # Protein_GI_number: 15645022 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori 26695 # 1 90 44 131 252 63 37.0 9e-11 MGDIFDFLAGEVPKSVYENKKTLELLEKLSLQHEIHYFEGNHDFSLKNIPYLRNIRCYPI EMQPVCFSFNQKNAYLSHGDIFLSWHYKLYTKIIRNHKI >gi|197283040|gb|ABQU01000010.1| GENE 2 428 - 1438 914 336 aa, chain - ## HITS:1 COG:aq_1879 KEGG:ns NR:ns ## COG: aq_1879 COG0002 # Protein_GI_number: 15606911 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate semialdehyde dehydrogenase # Organism: Aquifex aeolicus # 3 336 5 340 340 240 41.0 3e-63 MKIKVGIVGVSGYTGLELVKILINHPIFELKLLCATESHPNIASLHPALKNILQMPIIEA NIEKIAQECELVFLALPHQKAMEYVKTLYKKNIKIVDLSADYRLSFEKYEESYCQHLDKE NLKNAVYGLPEYNRNAIANTNLVANPGCYPTASLLGILPFAQYIDTTQTFYIDAKSGVSG AGKKLTQTSHYVTINENLFAYSPISHRHTPEISEQIKKIGNIQVKTIFVPHLIPITRGML VSIYAKLKEKINPLEILNEHYANEAFIRIHHNCVQIKNVVGTHFCDIYAKNDGEDLFISS SIDNLLRGASSQAVANANLMCGLDEKLGLPLIAYVP >gi|197283040|gb|ABQU01000010.1| GENE 3 1490 - 1687 357 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310590|ref|ZP_04809745.1| ## NR: gi|242310590|ref|ZP_04809745.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 65 1 65 65 112 100.0 6e-24 MEVKLNGKQIQTDSKSLLELLQEYHIEQKSVAVSINLEIIKQDKWNTYELKNGDVIECLT FMGGG >gi|197283040|gb|ABQU01000010.1| GENE 4 1722 - 3026 1392 434 aa, chain - ## HITS:1 COG:HP0683 KEGG:ns NR:ns ## COG: HP0683 COG1207 # Protein_GI_number: 15645307 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Helicobacter pylori 26695 # 5 432 2 432 433 439 52.0 1e-123 MENKLSIVILAAGKGTRMQSQTPKVLHQICGKEMLYYSIKESLKLSDDVSVVLGYKAQEI QEAMEQYFPNTLHFILQDLENYPGTGGALKNYRPRYKKVLVLNGDMPLIQADELKHFLSL DSDIIMSILDLPNTKGYGRVKIQNNEVLEIIEEKDASPEILSLSTLNAGVYCFRSEILET YLPKLQNHNAQKEYYLTDIIALSKKDSKSITPLFVELENFKGVNDKADLAHAEEIMGMRI KKALMQQGVIMHLPQTIYIQEGAKFVGECILENGVSIYGDCEIINSHIKAHSVIESSYIE NSDVGPLAHLRPKSILKNTHIGNFVEVKKSTLNGVKAGHLSYLGDCEIDEGTNVGAGFIT CNYNGKEKFQTKIGKNVFIGSDSQAVAPIVIEDDCIIGAGSTIREDIKKGSLFLTQGKKI HKENFFYKFFNKKA >gi|197283040|gb|ABQU01000010.1| GENE 5 3142 - 3906 1033 254 aa, chain + ## HITS:1 COG:BB0281 KEGG:ns NR:ns ## COG: BB0281 COG1291 # Protein_GI_number: 15594626 # Func_class: N Cell motility # Function: Flagellar motor component # Organism: Borrelia burgdorferi # 1 249 1 250 260 201 44.0 1e-51 MDLGTVIGMSLSFILIGSAMMLGVGIGPYIDIPSVMITIGGSITSLLIAFKLENMKKFFT YFAIAFKPQTFDVPALIKKLVDYSTQARRDGILSLEQQSNQEENEFLKRGLNMAIDGAEP DSIRDLLETDMDRTLERHKSNASIFDTWAAYAGAYGMLGTLIGLVAMLLNMSDPGSIGPA MAVALITTLYGSFIGNVVGSPIANILNVRANDEALVKLMIIEGIMSIQAGDNPRALEAKL LTFLPPSQRVSQFE >gi|197283040|gb|ABQU01000010.1| GENE 6 3925 - 4749 823 274 aa, chain + ## HITS:1 COG:HP0816 KEGG:ns NR:ns ## COG: HP0816 COG1360 # Protein_GI_number: 15645435 # Func_class: N Cell motility # Function: Flagellar motor protein # Organism: Helicobacter pylori 26695 # 1 252 1 247 257 112 31.0 1e-24 MAKRCPPCDCPQVVPLWLGTYGDMVTLILTFFILLLSMVTFDSKKLVEAEGSIRGSLSLL TGGIKIEKSNNRIQQQADITTDPETTNEVKKIESEIMDFKENTRVSLGPSTIIDEGSRGF ILRFNGKLLFDKNETTLKNAEEKLFLKRMALILQKMPANMHLDVIGYTDDSQIIPTQKYQ DNLGLSAMRALGVARVLIENGVNPQKITSLGNGATNFVLPNTTEENKAQNRRVEFRFYPN DRYLHKVQNILDKTIEQKNYEQKSNSSISQNIEQ >gi|197283040|gb|ABQU01000010.1| GENE 7 4758 - 5513 584 251 aa, chain + ## HITS:1 COG:Cj0820c KEGG:ns NR:ns ## COG: Cj0820c COG1338 # Protein_GI_number: 15792158 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliP # Organism: Campylobacter jejuni # 28 250 20 242 244 256 67.0 2e-68 MLSRFLLIVVFLPLVIFAAPPELPQSPTIPTIDLTLTAPNEPGDLVAILNIVIVLTLLVL APSLVLMATSFARILIVFSFLRTAMGTQQSPPTQLLVSFALILTMFIMEPVVKEGYEKGV KPYVAKEISYQEAFVRASQPFKDFMIRNTRPKDLALFYRIRGMENPQNAQEVPFTIALPA FIISEMKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPTMISLPFKILIFILVDGFN LLTMNLVESFR >gi|197283040|gb|ABQU01000010.1| GENE 8 5513 - 6622 985 369 aa, chain + ## HITS:1 COG:VC0154 KEGG:ns NR:ns ## COG: VC0154 COG2265 # Protein_GI_number: 15640185 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Vibrio cholerae # 15 367 10 367 369 288 39.0 1e-77 MNCENIGICGGCSALEEYSLESKIARASAMLGFQNFEVFGSQEVSFRARCELGIYHKENK IIYTMRKGRQFVPIQNCPILVDNLQAFLQVLKEVLNDDFFGDFREKLFAIEALSTQMDTI LLTLIYHKKLNDKWLEIARVFKEVLEKRGIKLEVVGRSRGVKIVVDKDFVIEELKVGKKG YFYRYDEGAFSQPNPKVNEKMLKWAMDSLKRSDEDLLEMYCGCGNFTIPFSEKFRKVLAT EISKTSIRAAKFACEKNQRNNIKFVRLNAQECIEALEGVREFRRLEGIRLQDYCFSSVFV DPPRAGLGEEVSRFLQRFQNILYISCNPSTLAKDLEILKQTHKISKVAFFDQFPHTPHLE SGVLLHKSN Prediction of potential genes in microbial genomes Time: Tue May 24 02:02:39 2011 Seq name: gi|197283039|gb|ABQU01000011.1| Helicobacter pullorum MIT 98-5489 cont2.11, whole genome shotgun sequence Length of sequence - 1937 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 1935 1947 ## C8J_0705 hypothetical protein Predicted protein(s) >gi|197283039|gb|ABQU01000011.1| GENE 1 3 - 1935 1947 644 aa, chain + ## HITS:1 COG:no KEGG:C8J_0705 NR:ns ## KEGG: C8J_0705 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_81116 # Pathway: not_defined # 2 508 171 627 1049 108 26.0 5e-22 TLIGDTIDIRGGKIENTKGGTNKDNSIYFVGENIYIDADAVNLSSNNIYATAFKEGYIQR QMKNFQKDRFTFGNFNQLITNESYAYNDNGNITNKSGQSNFKKVITLGNGNADEALSEWY WFANGWNNNNGDTRSVDEFRLVGDIDFSKQIGGRDRIIIDFSDSTQNKTYTGNYAAPINN GNGNLVNADYGDAMIVGGYKQKDWMDEKDFFAANFDGGGNTLSNVDIDYYDNSFTSQIGV FGNIIEDSSKAQITIKNLIIDGINISTTVYNYDNIGGFAGYINGGNFSNIILKNIGSISG VGLESASFDIGGFAGWIDGGTFSNIILSNIESIKAVGGIPKSSPILMVGGFVGQVSDASF SDIVLENFGTISSIIDNERSYGATRSFVGGFAGRNWDKNSFSNIVLNNIGAIRGKFSSDY VGEVIGVYSGGFIGSIESGGGIFSNIILNNIGDITSEIDADNKATYVGAESFAGGFVGYR NSINTIDTFSNIYLYFNPNATILAEITDRGKGVEGFGKFYGSLSGKTTFDNINLYYNDNP NLGLNNPIKNANSDSKDYYHSISNPNGQIFLNPYVNEAQGKEIFKQALEKQNNLGGAFES NKIVNIGDDSNPIYSFEQTTSSDITPPTDPSLPNIDLGNVALEK Prediction of potential genes in microbial genomes Time: Tue May 24 02:02:49 2011 Seq name: gi|197283038|gb|ABQU01000012.1| Helicobacter pullorum MIT 98-5489 cont2.12, whole genome shotgun sequence Length of sequence - 5295 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 2, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 60 - 101 4.5 1 1 Op 1 . - CDS 104 - 1390 802 ## COG0815 Apolipoprotein N-acyltransferase 2 1 Op 2 . - CDS 1390 - 1893 738 ## COG1666 Uncharacterized protein conserved in bacteria - Prom 1938 - 1997 7.7 + Prom 1928 - 1987 10.2 3 2 Op 1 2/0.000 + CDS 2019 - 2600 581 ## COG1286 Uncharacterized membrane protein, required for colicin V production 4 2 Op 2 3/0.000 + CDS 2611 - 4104 1639 ## COG1190 Lysyl-tRNA synthetase (class II) 5 2 Op 3 . + CDS 4106 - 5294 1368 ## COG0112 Glycine/serine hydroxymethyltransferase Predicted protein(s) >gi|197283038|gb|ABQU01000012.1| GENE 1 104 - 1390 802 428 aa, chain - ## HITS:1 COG:HP0180 KEGG:ns NR:ns ## COG: HP0180 COG0815 # Protein_GI_number: 15644809 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Apolipoprotein N-acyltransferase # Organism: Helicobacter pylori 26695 # 47 426 41 414 425 225 37.0 2e-58 MPLLSSFGLVFSQDKRTQILIGILSAFLLSAFIYLEYFFGDSNYKLFSSLFAILGLFLYL NLSRFGAFICGALIGILWFYWVALSFRFYDLTYLMPAIWLTFIIIFGFLFFLFCYFKNPL YKISTLLIASFIHPFGFNWFIPEIILTKSYFFPSKSILFLLLITLAIFAFLLHKRFYKIG ISLLLFALIATSLFSQTLYPTSHKSTLKIKTTSTNIPQNLRWDLANLNATIQSNLNLIQK AKQENYDLVILPETAFPMALNTQPSLIQSLKNLSQDIMIITGGVNKDKNNFYNSAYIFQQ GKMEILNKVILVPFGEKIPLPDFIAHWINEVFFKGGNDFASSLDKTPNSTILKDHFFQIA ICYEATRVEYYQNFPKFLIAISNNAWFYPSIESTLQKLLMQYFAFNYGTTIYHSSNGSKD FVLLPNQP >gi|197283038|gb|ABQU01000012.1| GENE 2 1390 - 1893 738 167 aa, chain - ## HITS:1 COG:Cj0374 KEGG:ns NR:ns ## COG: Cj0374 COG1666 # Protein_GI_number: 15791741 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 3 166 2 162 163 107 48.0 8e-24 MAAKEHSFDISAKVDIQEFKNALEQAKKEIANRFDFKDDKAKEITFNEKEKSFTILATSE NKAKTIKDIFDSKLIKRNLSLKVLKETSKDNSSGGNLKITYKLNDTLDDKNAKTINAEIK NQKFKVQTQIQGNEIRVKSKDIDELQKVIAHLKKMELEISLNFGNFN >gi|197283038|gb|ABQU01000012.1| GENE 3 2019 - 2600 581 193 aa, chain + ## HITS:1 COG:Cj0399 KEGG:ns NR:ns ## COG: Cj0399 COG1286 # Protein_GI_number: 15791766 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for colicin V production # Organism: Campylobacter jejuni # 6 186 5 182 187 126 37.0 2e-29 MDSLSYFDLIIGALILLIGIKGIVNGFIREVFGLFGIVGGVYIASVYSTQAGEWISQNIY TFENPSAIALIGFLVLLIVVWVASLVVAEILQRAVNMSSQSTMNRMLGFCFGALKTFMIF AVIFYAVSNIQIAKGFMQKHTQNSVLYPLLLDAGEVIIKLDVPQEAVKQEAIPQEKIQET AEDIENKVDNSLR >gi|197283038|gb|ABQU01000012.1| GENE 4 2611 - 4104 1639 497 aa, chain + ## HITS:1 COG:HP0182 KEGG:ns NR:ns ## COG: HP0182 COG1190 # Protein_GI_number: 15644811 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Helicobacter pylori 26695 # 1 497 1 494 501 665 66.0 0 MFEDDIYIQGRIQKANSLKELGINPYGNGIQKEMDCKTFLEKFESLTKLESDDRKDTSVN AQVAGRIKFVRLMGKAAFLKIEDNSGILQIYLSKNELGENFEIFKKYIEVGDIIVAKGFP FVTKTGELSLHALEFKLLTKAISPLPEKYHGLVDIEMRYRQRYLDLIMNKEVRDTFVLRS KIVSCVRRFFEENGFLEVETPMMHPIPGGANAKPFVTFHNALNVERYLRIAPELYLKRLV VGGFEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYKDYKDLIKITKALFDYLFAQLNLP KILKFNEKEIDFSEFREISYLDSLVEIGGIPREVATDRDKLYDYLIANNVKLESKMELGK LQSEAFDAFVEDKLINPTFITDFPIVISPLARRNDENPEIADRFELFIGGSEIANGFSEL NDPLDQYERFKEQVIAKEAGDEEAQYMDEDYITALSYGMPPTAGEGIGIDRLVMLLTGHN IIKDVILFPALKPQKKD >gi|197283038|gb|ABQU01000012.1| GENE 5 4106 - 5294 1368 396 aa, chain + ## HITS:1 COG:HP0183 KEGG:ns NR:ns ## COG: HP0183 COG0112 # Protein_GI_number: 15644812 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Helicobacter pylori 26695 # 1 394 1 394 416 604 74.0 1e-172 MSYFLEKSDKEIFDIIGEELERQNTHLEMIASENFTFPSVMEAMGSVLTNKYAEGYPYKR YYGGCEFVDKIEELAINRAKKLFGCEFANVQPHAGSQANAAVYAALLKPYDKILGMDLSH GGHLTHGAKVSITGQMYQSFFYGVELDGYINYDKVQEIASITKPNLIVCGFSAYSRELDF KRFREIADSVGAILLADIAHVAGLVVAGEYPNPFPYADVVTTTTHKTLRGPRGGMILTNN EEYAKKIDKAVFPGMQGGPLMHVIAGKAVGFGENLKPEWKQYAKQVKANAKVLADVLQKR GYKIVSGGTDNHLVLLSLLDKDFSGKDADLALGNAGITVNKNTVPGETRSPFVTSGVRIG SPALSARGFKEAEFDIVANKIADVLDDIQNTQKQEQ Prediction of potential genes in microbial genomes Time: Tue May 24 02:03:15 2011 Seq name: gi|197283037|gb|ABQU01000013.1| Helicobacter pullorum MIT 98-5489 cont2.13, whole genome shotgun sequence Length of sequence - 81074 bp Number of predicted genes - 95, with homology - 94 Number of transcription units - 21, operones - 16 average op.length - 5.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 160 59 ## gi|224418991|ref|ZP_03656997.1| protoporphyrinogen oxidase 2 1 Op 2 . - CDS 157 - 1371 909 ## COG0501 Zn-dependent protease with chaperone function - Prom 1398 - 1457 9.1 + Prom 1416 - 1475 8.6 3 2 Op 1 . + CDS 1503 - 2525 1025 ## COG1077 Actin-like ATPase involved in cell morphogenesis 4 2 Op 2 . + CDS 2561 - 2905 283 ## COG1496 Uncharacterized conserved protein 5 3 Tu 1 . + CDS 3002 - 3193 136 ## HH0214 hypothetical protein + Term 3213 - 3265 -0.4 - Term 3207 - 3248 5.2 6 4 Tu 1 . - CDS 3254 - 4459 1366 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase - Prom 4495 - 4554 6.0 + Prom 4492 - 4551 6.6 7 5 Tu 1 . + CDS 4581 - 4970 293 ## gi|242310606|ref|ZP_04809761.1| predicted protein + Prom 4972 - 5031 11.9 8 6 Op 1 . + CDS 5056 - 5298 314 ## COG3809 Uncharacterized protein conserved in bacteria 9 6 Op 2 . + CDS 5376 - 6041 705 ## COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase + Prom 6086 - 6145 4.5 10 7 Op 1 20/0.000 + CDS 6166 - 7338 1289 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 11 7 Op 2 . + CDS 7349 - 8329 1218 ## COG0822 NifU homolog involved in Fe-S cluster formation 12 7 Op 3 . + CDS 8346 - 8939 497 ## COG3467 Predicted flavin-nucleotide-binding protein 13 8 Tu 1 . - CDS 8946 - 9815 743 ## COG0428 Predicted divalent heavy-metal cations transporter - Prom 9945 - 10004 9.8 + Prom 10067 - 10126 9.8 14 9 Op 1 . + CDS 10151 - 10405 294 ## gi|224418979|ref|ZP_03656985.1| hypothetical protein HcanM9_06845 15 9 Op 2 5/0.000 + CDS 10407 - 10583 86 ## COG1629 Outer membrane receptor proteins, mostly Fe transport 16 9 Op 3 . + CDS 10559 - 12085 1574 ## COG1629 Outer membrane receptor proteins, mostly Fe transport + Term 12270 - 12313 -0.8 + Prom 12285 - 12344 11.4 17 10 Op 1 3/0.000 + CDS 12366 - 13724 1559 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 18 10 Op 2 . + CDS 13721 - 15172 1647 ## COG0516 IMP dehydrogenase/GMP reductase + Term 15179 - 15216 -0.8 19 11 Op 1 4/0.000 - CDS 15316 - 17682 2173 ## COG0457 FOG: TPR repeat 20 11 Op 2 . - CDS 17687 - 18982 1187 ## COG0172 Seryl-tRNA synthetase - Prom 19058 - 19117 7.2 + Prom 19036 - 19095 7.8 21 12 Tu 1 . + CDS 19132 - 19350 152 ## gi|242310619|ref|ZP_04809774.1| predicted protein 22 13 Op 1 . - CDS 19347 - 20687 783 ## COG0534 Na+-driven multidrug efflux pump 23 13 Op 2 . - CDS 20680 - 21240 413 ## SULAZ_1693 tellurite resistance protein TehB 24 13 Op 3 . - CDS 21233 - 22114 1035 ## COG0388 Predicted amidohydrolase 25 13 Op 4 . - CDS 22115 - 22276 400 ## 26 13 Op 5 1/0.333 - CDS 22279 - 22959 744 ## COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 27 13 Op 6 2/0.000 - CDS 22956 - 23738 776 ## COG0496 Predicted acid phosphatase 28 13 Op 7 . - CDS 23748 - 24614 654 ## COG0142 Geranylgeranyl pyrophosphate synthase 29 13 Op 8 . - CDS 24583 - 25671 898 ## WS1680 hypothetical protein 30 13 Op 9 2/0.000 - CDS 25675 - 25983 509 ## COG0718 Uncharacterized protein conserved in bacteria 31 13 Op 10 . - CDS 25976 - 26332 395 ## COG0853 Aspartate 1-decarboxylase 32 13 Op 11 . - CDS 26372 - 26566 64 ## gi|242310630|ref|ZP_04809785.1| predicted protein 33 13 Op 12 . - CDS 26491 - 28185 911 ## COG1112 Superfamily I DNA and RNA helicases and helicase subunits 34 13 Op 13 . - CDS 28145 - 29260 989 ## COG0409 Hydrogenase maturation factor 35 13 Op 14 . - CDS 29316 - 29771 330 ## gi|242310633|ref|ZP_04809788.1| predicted protein - Prom 29832 - 29891 5.6 + Prom 29708 - 29767 9.3 36 14 Op 1 1/0.333 + CDS 29823 - 30713 789 ## COG0130 Pseudouridine synthase 37 14 Op 2 3/0.000 + CDS 30707 - 30937 302 ## COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing) 38 14 Op 3 3/0.000 + CDS 30938 - 31693 577 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase 39 14 Op 4 2/0.000 + CDS 31695 - 32153 488 ## COG0691 tmRNA-binding protein 40 14 Op 5 30/0.000 + CDS 32163 - 32645 608 ## COG0811 Biopolymer transport proteins 41 14 Op 6 . + CDS 32663 - 33034 503 ## COG0848 Biopolymer transport protein 42 14 Op 7 . + CDS 33034 - 33219 93 ## gi|242310640|ref|ZP_04809795.1| predicted protein 43 14 Op 8 . + CDS 33221 - 35809 2690 ## HH0118 hypothetical protein 44 14 Op 9 . + CDS 35809 - 36537 470 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 45 15 Op 1 2/0.000 - CDS 36547 - 37242 463 ## COG0692 Uracil DNA glycosylase 46 15 Op 2 . - CDS 37242 - 37532 453 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 47 15 Op 3 . - CDS 37529 - 38176 564 ## COG1309 Transcriptional regulator - Prom 38219 - 38278 9.5 + Prom 38089 - 38148 7.2 48 16 Op 1 3/0.000 + CDS 38326 - 38799 487 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 49 16 Op 2 . + CDS 38799 - 40004 1477 ## COG0527 Aspartokinases 50 16 Op 3 . + CDS 40004 - 40549 560 ## WS1730 hypothetical protein 51 16 Op 4 3/0.000 + CDS 40551 - 41192 567 ## COG0470 ATPase involved in DNA replication 52 16 Op 5 . + CDS 41222 - 42352 949 ## COG0294 Dihydropteroate synthase and related enzymes 53 16 Op 6 . + CDS 42354 - 43331 978 ## WS1733 hypothetical protein 54 16 Op 7 . + CDS 43392 - 44468 917 ## COG1408 Predicted phosphohydrolases 55 16 Op 8 . + CDS 44535 - 46925 2395 ## WS0490 flagellar functional protein 56 16 Op 9 . + CDS 46915 - 47142 307 ## gi|242310654|ref|ZP_04809809.1| predicted protein 57 16 Op 10 . + CDS 47142 - 47918 711 ## COG0388 Predicted amidohydrolase + Term 47920 - 47963 2.3 + Prom 47945 - 48004 7.9 58 17 Op 1 . + CDS 48029 - 49876 2225 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 59 17 Op 2 . + CDS 49945 - 53463 3374 ## COG0587 DNA polymerase III, alpha subunit 60 17 Op 3 . + CDS 53451 - 53822 300 ## gi|242310658|ref|ZP_04809813.1| predicted protein 61 17 Op 4 . + CDS 53828 - 54580 621 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases - Term 54494 - 54526 0.6 62 18 Op 1 . - CDS 54577 - 55110 472 ## PROTEIN SUPPORTED gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 63 18 Op 2 4/0.000 - CDS 55107 - 55592 497 ## COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein 64 18 Op 3 21/0.000 - CDS 55589 - 56029 440 ## COG0314 Molybdopterin converting factor, large subunit 65 18 Op 4 . - CDS 56045 - 56266 287 ## COG1977 Molybdopterin converting factor, small subunit 66 18 Op 5 . - CDS 56293 - 56646 257 ## gi|242310664|ref|ZP_04809819.1| predicted protein - Prom 56680 - 56739 6.5 + Prom 56644 - 56703 8.1 67 19 Op 1 . + CDS 56729 - 57103 489 ## COG0251 Putative translation initiation inhibitor, yjgF family + Prom 57109 - 57168 4.8 68 19 Op 2 32/0.000 + CDS 57199 - 57510 515 ## PROTEIN SUPPORTED gi|239523064|gb|EEQ62930.1| 50S ribosomal protein L21 69 19 Op 3 14/0.000 + CDS 57533 - 57790 441 ## PROTEIN SUPPORTED gi|239523065|gb|EEQ62931.1| 50S ribosomal protein L27 70 19 Op 4 7/0.000 + CDS 57843 - 58931 1262 ## COG0536 Predicted GTPase 71 19 Op 5 . + CDS 58931 - 59707 909 ## COG0263 Glutamate 5-kinase - Term 59780 - 59815 0.3 72 20 Op 1 . - CDS 59982 - 61310 837 ## gi|242310670|ref|ZP_04809825.1| glycosyl transferase family protein 73 20 Op 2 . - CDS 61314 - 63545 1750 ## COG4092 Predicted glycosyltransferase involved in capsule biosynthesis - Prom 63573 - 63632 8.1 + Prom 63515 - 63574 7.5 74 21 Op 1 . + CDS 63686 - 64111 440 ## HH0918 hypothetical protein 75 21 Op 2 3/0.000 + CDS 64177 - 65079 640 ## COG0223 Methionyl-tRNA formyltransferase 76 21 Op 3 3/0.000 + CDS 65079 - 65711 363 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase 77 21 Op 4 25/0.000 + CDS 65711 - 66511 643 ## COG1192 ATPases involved in chromosome partitioning 78 21 Op 5 3/0.000 + CDS 66511 - 67404 860 ## COG1475 Predicted transcriptional regulators 79 21 Op 6 14/0.000 + CDS 67473 - 67898 480 ## COG0711 F0F1-type ATP synthase, subunit b 80 21 Op 7 38/0.000 + CDS 67908 - 68423 483 ## COG0711 F0F1-type ATP synthase, subunit b 81 21 Op 8 41/0.000 + CDS 68425 - 68961 479 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 82 21 Op 9 42/0.000 + CDS 68982 - 70496 2060 ## COG0056 F0F1-type ATP synthase, alpha subunit 83 21 Op 10 42/0.000 + CDS 70510 - 71397 873 ## COG0224 F0F1-type ATP synthase, gamma subunit 84 21 Op 11 42/0.000 + CDS 71410 - 72825 1583 ## COG0055 F0F1-type ATP synthase, beta subunit 85 21 Op 12 3/0.000 + CDS 72835 - 73227 473 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) 86 21 Op 13 30/0.000 + CDS 73224 - 73796 354 ## COG0811 Biopolymer transport proteins 87 21 Op 14 . + CDS 73786 - 74202 456 ## COG0848 Biopolymer transport protein 88 21 Op 15 . + CDS 74195 - 74953 589 ## WS0520 hypothetical protein 89 21 Op 16 20/0.000 + CDS 74955 - 76235 1183 ## COG0823 Periplasmic component of the Tol biopolymer transport system 90 21 Op 17 . + CDS 76300 - 76818 621 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 91 21 Op 18 . + CDS 76831 - 77787 932 ## WS0523 hypothetical protein 92 21 Op 19 . + CDS 77798 - 78313 742 ## COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 93 21 Op 20 2/0.000 + CDS 78329 - 79465 893 ## COG0585 Uncharacterized conserved protein 94 21 Op 21 2/0.000 + CDS 79465 - 80388 915 ## COG0501 Zn-dependent protease with chaperone function 95 21 Op 22 . + CDS 80398 - 80940 560 ## COG0302 GTP cyclohydrolase I + Term 80971 - 81007 -0.8 Predicted protein(s) >gi|197283037|gb|ABQU01000013.1| GENE 1 1 - 160 59 53 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224418991|ref|ZP_03656997.1| ## NR: gi|224418991|ref|ZP_03656997.1| protoporphyrinogen oxidase [Helicobacter canadensis MIT 98-5491] # 1 52 1 52 278 67 69.0 3e-10 MNLKEALDFGTKRLQSRQILRPRLESEILLSFVLNQPRIYLHIHETQALSHFE >gi|197283037|gb|ABQU01000013.1| GENE 2 157 - 1371 909 404 aa, chain - ## HITS:1 COG:HP0382 KEGG:ns NR:ns ## COG: HP0382 COG0501 # Protein_GI_number: 15645010 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Helicobacter pylori 26695 # 1 396 8 405 407 345 48.0 1e-94 MIFAICYGIFFTLPKIFLSIIELRFLKSQLYQKPYILDSQSFIKAANYSIIKEKISLLQS LVDFILVGIWIAFGLHFLESFINTHSLLGSVVFVLLFLLIQSLFSLPFEAYKTLVIDKQF GFAKGGIKLFILDNIKSFLLLLIVGGILIFIFIWIISNIQYWEFYAFIVSAILIVTINLL YPTLIAPIFNKFTPLQDENLKTSIQNLLNQVGFNSNGIFVMDASRRDGRLNAYFGGLGKT KRVVLFDTLLEKIPQDSILAVLGHELGHFKNLDIYKMMGLVLLFVFILLNIIANFPQSLF AQANLTQSPHSIVVFLLLLSAPIGFYFTPIIGFFSRKNEYNADEFGANLTSKEALAKALL LLVKENNSFPLSHPLYMRFYYTHPPLMARLIALDCEKLAFKDAD >gi|197283037|gb|ABQU01000013.1| GENE 3 1503 - 2525 1025 340 aa, chain + ## HITS:1 COG:PA4481 KEGG:ns NR:ns ## COG: PA4481 COG1077 # Protein_GI_number: 15599677 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Pseudomonas aeruginosa # 7 317 11 327 345 210 35.0 4e-54 MAFFGRNDIAIDLGTVNTIVRNNVEEIIFCEATCIALEDTRNFKRVVCIGEQAKKMLGRA PQNFEIVNPLLNGAISDFETTKIFIGALINLGQTRNLAPRVGISIPRNLTQVERHSLHEA AMLAGAKEVFLIEDPFSASVGAGLDISTSRAKMIIDAGGGLVEVSVISLGGLVTSAFTKE AGDFIDYALVEYCRHNKNISISKEMAENIKRQINVFGDNPIINIGAKSLATGMPIAFELN LNDLKEVLLSGMYKIKKTILEAIQKSPAQIAPDLIDDGAILTGGMALITGMKEFLEEELK MKINLSPNPLLDISKGACIIMQNYEAYDRVEDRWGGGDHN >gi|197283037|gb|ABQU01000013.1| GENE 4 2561 - 2905 283 114 aa, chain + ## HITS:1 COG:Cgl2104 KEGG:ns NR:ns ## COG: Cgl2104 COG1496 # Protein_GI_number: 19553354 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 4 105 31 135 246 58 27.0 3e-09 MGDNVAYHAGDSTKREVEANHKRLLESQGFCLEQLVFLNQVHGKEILKANHFGLLGEGDG ILIDKKGIVGLIMVADCNPIVIFDLQNKILVMLHAGRLGVEKGIVFEACKVLQK >gi|197283037|gb|ABQU01000013.1| GENE 5 3002 - 3193 136 63 aa, chain + ## HITS:1 COG:no KEGG:HH0214 NR:ns ## KEGG: HH0214 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 13 62 222 273 274 65 57.0 6e-10 MEGKILQNGKIYLDLVAVLKRQFNEMGINHYEISPICTCCDKKYFSYRRDKKCGRFGMFA SLE >gi|197283037|gb|ABQU01000013.1| GENE 6 3254 - 4459 1366 401 aa, chain - ## HITS:1 COG:jhp0570 KEGG:ns NR:ns ## COG: jhp0570 COG2171 # Protein_GI_number: 15611637 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Helicobacter pylori J99 # 4 401 3 401 401 546 66.0 1e-155 MDTNHFKQKVSEIQAKSDYKAPIGFGICYADVGIMSNKVLQATYPVLNWKENFGSYAIFW ELREECEILEECESELVFGITEEFVIKALEAFSPYLAETQSNPNAHKNVAVVLELQRALQ EDRIYTENGDFRYRFCAIYEDTQCKSVESAYMKLLALSLGKAPLRSLYLDGIFGLLTNVA WSGNVPFELDWLRENEIALKMRGEFPAIDFVDKFPRYLMQVIPQYDNIRLLDTAKTRFGA YLGTGGYTQMPGASYVNFNAGAMGACMNEGRISSSVIVGEGSDVGGGASILGVLSGGNSE PISIGKNCLLGVNSSTGISLGDGCIVDGGIAILAGTVFKITPQEAQKIKEINPTFEIKED GLYKGKELSGKNGIHFRCDSKTGVMIAFRSNRKIELNSALH >gi|197283037|gb|ABQU01000013.1| GENE 7 4581 - 4970 293 129 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310606|ref|ZP_04809761.1| ## NR: gi|242310606|ref|ZP_04809761.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 129 1 129 129 229 100.0 3e-59 MQKDILILILLCAAIGVLFVGLWIAFLMSKTKTNIKSEKFPSAEELLAKMSKKENSLQDL IECVKFAKIHYNLYMGEVEDFDMKFLLILATHKATDAKLILDVESYFKLANPQRREKLEK ILGVGMARR >gi|197283037|gb|ABQU01000013.1| GENE 8 5056 - 5298 314 80 aa, chain + ## HITS:1 COG:Cj1164c KEGG:ns NR:ns ## COG: Cj1164c COG3809 # Protein_GI_number: 15792488 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 1 80 1 87 87 110 67.0 5e-25 MQCPVCNVDLVMSERSGVEIDYCPKCRGVWLDRGELDKIIERSQSTSHSQARYEEPRYKE SRHYEKPRKRESFLGELFDF >gi|197283037|gb|ABQU01000013.1| GENE 9 5376 - 6041 705 221 aa, chain + ## HITS:1 COG:HP0230 KEGG:ns NR:ns ## COG: HP0230 COG1212 # Protein_GI_number: 15644858 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: CMP-2-keto-3-deoxyoctulosonic acid synthetase # Organism: Helicobacter pylori 26695 # 1 219 26 236 243 211 52.0 1e-54 MVVRVAQIAKEVDNVVIACDDENVQKVCKDFGFEGVLTNKEHNSGTDRIAECARILGVDD NEIVINLQGDEPFIEQEVIQTLKDFMESKAKELGEIPFMGSCAKVISKEEAKDPNLVKVI FNKSDEAIYFSRSLIPYDRENIMDTHKEWHYFGHLGIYAFSGKSLQEFCKLPKSPLEEIE KLEQLRAIENNKKIVMAKVSSKSFGIDTKEDLQRALEIFCR >gi|197283037|gb|ABQU01000013.1| GENE 10 6166 - 7338 1289 390 aa, chain + ## HITS:1 COG:jhp0206 KEGG:ns NR:ns ## COG: jhp0206 COG1104 # Protein_GI_number: 15611276 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Helicobacter pylori J99 # 6 390 3 387 387 603 74.0 1e-172 MEKSSKRVYLDNNATTMLDPRAKELMEPYFCEKYGNPNSLHTFGTETHKAIREAFNHLYE GINARDEDDIIVTSCATESNNWVLKGVYFDVLRFGEKNHIITTDVEHPAVLATCRFLETL GVEVTYLSIGENGTLKAKQVEEAITDKTALVSIMWANNETGIIFPIDEIGEICKRRGVLF HTDAVQAIGKIPVDVQKANVDFLSFSGHKFHGPKGIGGLYIKKGVKLTPLFHGGEHMGGR RSGTLNVPYIVAMGEAMRQACLHLDFERNNVRRLRDKLEDALLEIPDVFVVGDRALRVPN TILVSIRGVEGEAMLWDLNKNGIACSTGSACASEDLEANPVMSAIGADKELAHTAVRISL SRFTTQEEIDYAITIFKKSIERLRAISSSY >gi|197283037|gb|ABQU01000013.1| GENE 11 7349 - 8329 1218 326 aa, chain + ## HITS:1 COG:jhp0207_1 KEGG:ns NR:ns ## COG: jhp0207_1 COG0822 # Protein_GI_number: 15611277 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Helicobacter pylori J99 # 1 159 1 160 160 265 81.0 7e-71 MAKNELLGGALWDAYSKKVSERMDNPTHLGVITQKEADERGLKLIVADYGAEACGDAVRL YWLVDSNDVIVDAKFKSFGCGTAIASSDMMVELCLGKKVQEAVKITNIDVEKALRDDPDT PAVPGQKMHCSVMAYDVIKKAAALYLGKNPEDFEDEIIVCECARVSLGTLKEVIKLNDLK SVEEITEYTKAGAFCKSCIKPGGHEEREYYLVDILRDVRAEMEEESLKNKADLESKGDLK FADMTLVQKIKAIESLIDEKIRPMLMMDGGNMEIIELKNSSDGHTDVYIRYLGACSGCAS GATGTLFAIESVLQEGLDSSIRVFPV >gi|197283037|gb|ABQU01000013.1| GENE 12 8346 - 8939 497 197 aa, chain + ## HITS:1 COG:CAC2475 KEGG:ns NR:ns ## COG: CAC2475 COG3467 # Protein_GI_number: 15895740 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein # Organism: Clostridium acetobutylicum # 1 124 5 121 154 62 36.0 8e-10 MRRSEFECNDSKIIESMLQKIEFGVMIIPDVEPYGVPISFCYCGDEIYFHGAKSGRKYHL LKENPKVSFSATKVYSYIPSTFLYNTMIPTQFFFSVYLSGTFETITDYQRKKCILKSLAQ KYESHNDSLDMDLGQFKGQERGVFVGAIKVESQSIKAKFGQNLKQEVREQIIRDLTNRGT LLDQETIEMMRYFSPQP >gi|197283037|gb|ABQU01000013.1| GENE 13 8946 - 9815 743 289 aa, chain - ## HITS:1 COG:Cj0263 KEGG:ns NR:ns ## COG: Cj0263 COG0428 # Protein_GI_number: 15791634 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted divalent heavy-metal cations transporter # Organism: Campylobacter jejuni # 1 289 1 291 291 338 66.0 8e-93 MEILSWQVFYAIMLTFFAGASSAIGALIAFFSYANNTRFLSFGLGFSAGVMIYIAFVEIL PSSLLDFKTYSKDFGEIIGLLCFFGGLLISLLIDKLIPKELNPHNPKDNDELLELKICPI PSGKQKPSYHPGISQRETLKLKHMGILTAIAIGIHNFPEGFAVFASSLDNLSFGIIIALA IAIHNIPEGMAVSLPIYHATGNKKKAFYYSAISGLAEPLGAIIGALFLLPFMGDLTLAIT FAFVAGIMVFISLDELLPASKNYGEAHDSLYGLILGMVVIAFSLLILNH >gi|197283037|gb|ABQU01000013.1| GENE 14 10151 - 10405 294 84 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224418979|ref|ZP_03656985.1| ## NR: gi|224418979|ref|ZP_03656985.1| hypothetical protein HcanM9_06845 [Helicobacter canadensis MIT 98-5491] # 1 78 1 78 644 146 93.0 4e-34 MKHKAFAFLSLSTLLYSQGNQVTIQYANSPLANPTQIDYTDILGKDSLLNNSDIAKSLQQ IPGFSVAKKGGGGTEAFFLIAWWR >gi|197283037|gb|ABQU01000013.1| GENE 15 10407 - 10583 86 58 aa, chain + ## HITS:1 COG:BMEII0297 KEGG:ns NR:ns ## COG: BMEII0297 COG1629 # Protein_GI_number: 17988642 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Brucella melitensis # 3 57 85 139 649 60 45.0 5e-10 MPIVVNGGTLLGGCGGRMDTTLTYIFPQNYNSITIIKGPQDVRYGSLITGECFLIERF >gi|197283037|gb|ABQU01000013.1| GENE 16 10559 - 12085 1574 508 aa, chain + ## HITS:1 COG:PA3790 KEGG:ns NR:ns ## COG: PA3790 COG1629 # Protein_GI_number: 15598985 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Pseudomonas aeruginosa # 1 508 182 721 723 238 32.0 2e-62 MLFDREILTLQKPSFSGGVDALYGSFGRVDANAHLVGGNELGSLQAIYSNYRSDDYESGR GDRVHSAYKRQSGIFVGALTPSPDLKLELSFDIGRGEAAYADRTMDARTFDRESYQAHLV KFLNDDKLDFHIYHHEIDHIVDNFSLTNGMPKIGNKYQISNPNRANTGGRLEYQKKFDLS KIYFGGNYNLDKHKTRSIANQNSAQEAEIILNSPYAPNYTFKSYGVFSQIETFTSSNMGY FAGIRGDRVDMTAHKLDTSNTKYALSGFGRAEKYFGDYTLYAGLGYAQRIPDFWEVSKGN GLNLKKEKNTQLDLGATYHKENLSFSLSSYVSYIQDYIMLNYNTATTTSFNTDALLLGRE AEISYEFLPNTFALAQMSYTYGQDTKENRPLAQIAPLQTLFALKYDDNKYFIKGEIIVHA KQTRSLEGYGNVVGQDFGDSSGFGIINFYVGYAYDNIKLFAGVENLTDKLYSYHLSKNSI DLSVADNPVSSRIYEMGRNFWIRAKIDF >gi|197283037|gb|ABQU01000013.1| GENE 17 12366 - 13724 1559 452 aa, chain + ## HITS:1 COG:jhp0769 KEGG:ns NR:ns ## COG: jhp0769 COG0154 # Protein_GI_number: 15611836 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Helicobacter pylori J99 # 6 445 3 445 453 536 64.0 1e-152 MDSIPTLQEALKLDRDGIKELKEKLKKKIQESNLNAYVGELQDYQEDFLPIAIKDNINVK NWEITCASKILKGYIAPYNATAVENLLSHKMAPFGRTNMDEFAMGSTTASSCYGKTLNPK NLNKVPGGSSGGSAAAVAGGIALAALGSDTGGSIRQPASFCGCVGLKPTYGRVSRYGLVA YSSSLDQIGPITQNVTDCAILFDAISGYDKMDSTSANLAPTKTHKNLNPNTKMKIAILPN LLKDADANIQNAYQKTIDRLSKDGHTIIEKEMLDTSYIISAYYVICTAEASSNLARFDGV RYGNRAKDVNNLKELYFKTRSQGFGDEVKNRILLGSFVLSSGYYDAYYIKAQKVRTLIAR QYSEILKECDVILSPVAPSTAFGFDECKSPLQMYLEDIYTIGVNLAGLPALSLPVSEDDG MPIGMQLIGDSFAEQKILDLGLNLENLCKEDL >gi|197283037|gb|ABQU01000013.1| GENE 18 13721 - 15172 1647 483 aa, chain + ## HITS:1 COG:Cj1058c_3 KEGG:ns NR:ns ## COG: Cj1058c_3 COG0516 # Protein_GI_number: 15792385 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Campylobacter jejuni # 201 483 1 284 285 399 73.0 1e-111 MKIRARALTFEDVLLVPAYSEILPKEVSLQTKFSKNITLNSPLVSAAMDTVTEYRTAIAM ARVGGIGIIHKNMDINSQVAQIKKVKKSESGVIIDPIFISPEATLMQAKAITDNYKISGV PVVDDSGSLIGILTNRDMRFETDLNRLVKEVMTKAPLITAQVGTSLEEARNIMNKHKIEK LPIVNEKGILKGLITIKDIQKRIEYPHSNKDDFGRLRVGAAIGVFQYDRAKALVDAGVDV LVLDSAHGHSRGILETIKEIKKHLVVDIVAGNVATKEGAKALIEAGADGVKVGIGPGSIC TTRIVAGVGVPQITAIADVAEICNQEGIPLIADGGIKYSGDIAKALAAGASSVMIGSMLA GTEESPGETIIYQGRQYKSYRGMGSLGAMNKGSADRYFQEGTAQEKLVPEGIEGRVPYRG KIADVIHQMLGGLRSSMGYLGSKDIPTLWEKAEFVEITQSGLRESHVHDVMITKEAPNYH ISN >gi|197283037|gb|ABQU01000013.1| GENE 19 15316 - 17682 2173 788 aa, chain - ## HITS:1 COG:Cj0390 KEGG:ns NR:ns ## COG: Cj0390 COG0457 # Protein_GI_number: 15791757 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Campylobacter jejuni # 26 781 61 818 820 377 34.0 1e-104 MALQEDDKQIIRLDDGFDILQDILKKEEKPKQLSKFEKIQLFFKERKKLAIALALLLGFL IILFIFLLGQFLSQEPTTNTQQESKILPPKFSIQRGGDIITNAENLEAWLKKANFLYSSG NKKEALDLYEKISSYSEGLSNYNLGVAQMEEKSYENALQSFQKAIDLGEDRVISSLNAAV CSLYLNQPLKYKYYLDLAETYLPYSGNLPLYSYLYALTHYYKGNYFEAFSPLTHQSSTYY QEQNNYLLSSLYTYFNDDYKAIEILEKNSKNPNTWFNLALLYARIGDYSKAHSLIAQSIE ALGTSLDKEMALLLMKLQLSRFADASKILNKYANDKESINQNPYPIKISLKKDFFDVNIA QKRFWDNFNGLKLNSYKILFYFAPYKVFDAKEAFNIIQEGGINIHIENLQEAKEILLRGQ TISKVNKNIANAILETLNGNIRNANKLLTTAITDYPNHSILHYNLGLNYAQMGDFDHSYQ HFIRAFHLNPQDLQAGIFALIASQLTYRDSTRLNNEINQEIINLKGTKEERDFIRALLNF VHNGTPMPLEFLETQKSNIAIYYALNFTQSILLQNQSLLISSASSLKSLLPNDPLSNLLE LLALNYKDDPKSLSLKLQSYYQNPSINKEPIYYGAAVVREMYIEIAYIIGSLHYVQKDLD NRLITEQKDVRGVIQALALTYIYLQEFEKSFTLYNSLIDDFKEQDTQTLFLAAVAAVGAG HTENAATLLQLSKLEAPTNYETRIANGILYLQENNYNAAASQFTTIGNSGIISEFFDFKI DTEKLLNR >gi|197283037|gb|ABQU01000013.1| GENE 20 17687 - 18982 1187 431 aa, chain - ## HITS:1 COG:HP1480 KEGG:ns NR:ns ## COG: HP1480 COG0172 # Protein_GI_number: 15646089 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Helicobacter pylori 26695 # 1 430 1 415 415 489 60.0 1e-138 MIDLKLLVNDFENVVQGLSKRNIDEVFLETLRQTHLNYKQKKIALEEKQALQNSKTKLFA QYKQEGKDIQELKKECDLLKAEISLYTQESQMWEEKLQELSYMIPNIPDSKTPFGKDEND NVEIKKILEPKTFSFSPKEHWELAEKNGWIDFERGVKLAKSRFSVFMGMGAKLERALINY MLDFNTQRGFSEVGTPVIVNSQMLFGTGQLPKFENDLFKISDFDDEESQDSKEAKRGHEL YLIPTAEVTLTNLHNNEILQEEELPLMMTAYTPCFRKEAGSAGRDTRGIIRQHQFDKVEL VAITTPQESEMMQERMVACASALLTSLGLPHRLIQLCGGDLGFSASNTIDIEVWLPGQNC YREISSISNTRDFQARRAKIRYKDANKKNHLVHTLNGSSLAVGRTLVAIMENYQQEDGSI EIPSVLQPYLR >gi|197283037|gb|ABQU01000013.1| GENE 21 19132 - 19350 152 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310619|ref|ZP_04809774.1| ## NR: gi|242310619|ref|ZP_04809774.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 72 1 72 72 74 100.0 2e-12 MGSVGSFALVFGIIIAISLLIVLATIISVMRSGNKLTSFEKKILVFVAMALCFFVIVLYI ASNFSLFLAWIS >gi|197283037|gb|ABQU01000013.1| GENE 22 19347 - 20687 783 446 aa, chain - ## HITS:1 COG:jhp0696 KEGG:ns NR:ns ## COG: jhp0696 COG0534 # Protein_GI_number: 15611763 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Helicobacter pylori J99 # 34 443 4 412 417 259 38.0 6e-69 MLNRLKFYSKERSRKILNIAIPSGLNSLLDIINLSIDLMFIGVFGANAIVAVGISLNYIM LFFAFTTIIFVGNSALVSRFLGAKDRKSADEVVLSLTFAAFCFSIPLLILAFLGFDYFFS WVGISDEARQIGHSYLAITLFSIPLLLIKQVSISAFSAAGATKIPFFIKIFITLFNPALK YIFIFGFFFIPSFEIIGAAIATLIVNFAETLALFLCLLLYKKSPISLKGKINFNYIKRAF MVGIPSGCERLFTLFSIILMTKFIALYGTYDLAGYQIATRIEGFAFMPGFGFMIAAMALM GQNLGAKKPLEARYSTLNTLLLGGIFMGIVGFIMSAFAPFLSSFFSRDSQTIIASAKYLI PIGISQIAFAFICILDGALRGAGITKITLIVNSIMIWGLRVIPCYFFAKLGYPIIYIYIC ICLETFLRAFVYWKIFQMGIWRKHKV >gi|197283037|gb|ABQU01000013.1| GENE 23 20680 - 21240 413 186 aa, chain - ## HITS:1 COG:no KEGG:SULAZ_1693 NR:ns ## KEGG: SULAZ_1693 # Name: not_defined # Def: tellurite resistance protein TehB # Organism: S.azorense # Pathway: not_defined # 3 184 4 180 184 156 51.0 4e-37 MIKDKEKWDLQHKINPLPDNPLQLLIENIHLAPKGKALDIACGMGRNSKFMRDNGFVVDS VDISSYAISKLQNEIDINPICEDLDTFKIPPHTYDLICNSFFLERRLFPFMIEGLKKGGL LIFETFIKSDNEAFNAFAKDSSHLLRKNELLKSFLDLEILFYQEKLIQRNNKDSSLALVA RLVARA >gi|197283037|gb|ABQU01000013.1| GENE 24 21233 - 22114 1035 293 aa, chain - ## HITS:1 COG:Cj0947c KEGG:ns NR:ns ## COG: Cj0947c COG0388 # Protein_GI_number: 15792276 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Campylobacter jejuni # 4 293 1 290 290 415 67.0 1e-116 MQPIKVALIQQAFKGTKAATMQASAKMIKEAAQNGANLVLLQELHTTEYFCQSENVDFFD YALSFQKDCEYFSEIAKNNNIVLVTSLFEKRTSGLYHNTAVVFEKNGEIAGKYRKMHIPD DPGFYEKFYFTPGDLDFTPIQTSLGKLGILVCWDQWYPEAARIMALRGAEILIYPTAIGW FDEDSKDEKERQREAWIAIQRGHAIANGIPVVAINRVGFEKDSSEVLAGIRFWGSSFAFG AQGEILALGSVENEEIIYFEWDKKRTEEVRRIWPFLRDRRIDSYQSILKRFDD >gi|197283037|gb|ABQU01000013.1| GENE 25 22115 - 22276 400 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQILTKSYEDECEEFEEEEYDGYDSRYEDSDKYNYDDDDYENNDDDYESDEDY >gi|197283037|gb|ABQU01000013.1| GENE 26 22279 - 22959 744 226 aa, chain - ## HITS:1 COG:jhp0692 KEGG:ns NR:ns ## COG: jhp0692 COG1179 # Protein_GI_number: 15611759 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 # Organism: Helicobacter pylori J99 # 5 226 7 221 235 230 54.0 2e-60 MSDKRFARTLLLFKEEGFKKLQKANVLLLGVGGVGGFALDCLYRTGIGRICIIDYDSFDE TNQNRQIGSLEGLGQKKVQVLSKKYPNIEAIETKITKDFLNDFDFSSFDIVIDAIDDIDA KIALALKIANHTKKQNNYPILLSSTGSAKKLDPSQIQSASIWKTYGDKFARKFREGLKKQ GFKGDFLAVFSPEIPKCKELGSFSGVTGSFGLRLASEAISIILQKE >gi|197283037|gb|ABQU01000013.1| GENE 27 22956 - 23738 776 260 aa, chain - ## HITS:1 COG:Cj0293 KEGG:ns NR:ns ## COG: Cj0293 COG0496 # Protein_GI_number: 15791661 # Func_class: R General function prediction only # Function: Predicted acid phosphatase # Organism: Campylobacter jejuni # 1 258 1 253 258 262 50.0 4e-70 MKRILITNDDGYQSPGLLALKEALMPLGHIVIVAPANEKSACGHGMTLTRPLRFIKLDDD FYKLDDGSPTDCIYLSLHALYEENFKPDLIVSGINIGSNMGEDVSYSGTASAAMEGVLHG IPSIAISQVLQDKDYFGFDFSLAKDTIYHLAKKVLDKGFPLGEREFLNVNIPQISKEQCN GIKITELGIRVYGNDAHLHRNPRGEEYYWLGLHPLNWEERNNGETSDFNAIMNNFVSITP ISLDFTARNRLENLQNWILQ >gi|197283037|gb|ABQU01000013.1| GENE 28 23748 - 24614 654 288 aa, chain - ## HITS:1 COG:Cj1644 KEGG:ns NR:ns ## COG: Cj1644 COG0142 # Protein_GI_number: 15792949 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Campylobacter jejuni # 12 286 7 281 281 271 51.0 1e-72 MRKNLQSIFGEFETYLISQAPKVPSFHPYFEKALWEMVENGGKRFRPKLLLSIVDAYKPK SIQKAFSSALALEILHTYSLIHDDLPAMDNADLRRGAQTLHCKYDECGAILIGDALNTHS FYCIATSKLKPKIKNKLIKILSYNGGIYGMVLGQALDCYFEKQTLPLKDLRTIHLNKTAK LIAASLQMGGIIAKCDKTTCKTLYKIGLDLGLFFQIRDDIIDATQSSKEAGKTTHNDLQK NSYVNLLGLKSAQIEAKKLQISIQKQLHSLTPKAQRNLEILLSKYFTF >gi|197283037|gb|ABQU01000013.1| GENE 29 24583 - 25671 898 362 aa, chain - ## HITS:1 COG:no KEGG:WS1680 NR:ns ## KEGG: WS1680 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 17 355 14 341 341 252 37.0 2e-65 MKHKILRIFFIFFFIEISTFAYDFTACQNKAALSMEKIGQSYGIAIQSLQKDSSPSKNIL FFYSPKNPPKGYKILKHDPFVGMYLLESKTNLTPITLKQIDSKMLEDEIASITPTKSVSG KIKNQMQSPIDFASLNTPTFPNSLISTICEHIYGIGIGNNQFIDKKYLDRFINNPIYYGD IGIRVIQNQEDRVEVSLIDPFFENNPFKYGDIIMMVNGEAIPNVSQFNRVVFDLKEGSTI PVRIQRDGTIHNISVKVDKRHGGMLLKEDFLWRIGIEISDDFTITSVSPNAKNGFELLQV GDKVLKINQNNVPYGYNAIIRFLGDYTNMRQKWLISRKDFQFFIEVNQQKASNEEKPTIY FW >gi|197283037|gb|ABQU01000013.1| GENE 30 25675 - 25983 509 102 aa, chain - ## HITS:1 COG:Cj1642 KEGG:ns NR:ns ## COG: Cj1642 COG0718 # Protein_GI_number: 15792947 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 1 96 1 99 103 91 62.0 3e-19 MFNPQDLAKTLETLQENFKNAQEENKNLTFSAKSGGGLINVSANGEGEIIDISIDDSLLE DKESLQILLISAINDVYKSVETNRKNMAMGMLGNIGNFPFKG >gi|197283037|gb|ABQU01000013.1| GENE 31 25976 - 26332 395 118 aa, chain - ## HITS:1 COG:HP0034 KEGG:ns NR:ns ## COG: HP0034 COG0853 # Protein_GI_number: 15644667 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate 1-decarboxylase # Organism: Helicobacter pylori 26695 # 1 110 5 115 117 133 63.0 8e-32 MLYSKIHRARVSDANLNYVGSITIDDALMEAAGLLEGQKVDIVNINNGERFSTYVIKGKS GDICLNGAAARKVQVGDKIIIMAYAQFSKEELKHYEPKVVLVDENNKIIQIKKDLSNV >gi|197283037|gb|ABQU01000013.1| GENE 32 26372 - 26566 64 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310630|ref|ZP_04809785.1| ## NR: gi|242310630|ref|ZP_04809785.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 64 1 64 64 87 100.0 3e-16 MAKPKRTISKRTYSNLQTLFFIPNLVNTPHTLQKFFIQSSKNKKIKTKSIHTNKNVLKLD NFLI >gi|197283037|gb|ABQU01000013.1| GENE 33 26491 - 28185 911 564 aa, chain - ## HITS:1 COG:SPAC16C9.06c KEGG:ns NR:ns ## COG: SPAC16C9.06c COG1112 # Protein_GI_number: 19113992 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases and helicase subunits # Organism: Schizosaccharomyces pombe # 168 535 397 801 925 65 25.0 3e-10 MQLILNTKGFNLNSLTQDSYDFLIESAQNYYDYLVENNLGYDEIKIQSISKTIFGLQLTL YSKLFSLEGLVLRFLDEEFPISENLSIQTSFYDEKHKILSLEIEESLKNQLFEKKNEIRL FSDLKFLVKNILNFYLSLKPLHFPTTLPRISPDIRALKDLENPPHQEQLEALEGIFSKSF CYVWGVAGSGKTKMVLLHALAFYLKSNLKVAILAPTNNALEQSLNTLIESLNNIGIDTSC ILRLGTPTQTFAQRFPQNCDPLLNNKPNYKKAIQKSLLIAATLDTFLRRDELYELPFAHF FIDEAAFCPLIKVIPLCMFNKPITLLGDHKQLQPICLLNKQDSNNPKWQISKFWQYSSLF LESFFRHQTDFFKANPTTQINSPSYPFYTLTYTHRYGDNLAKLLDFYIYKNNLKGLPNHT NLFYHFIQTTSQENNANLDEANACCYLAKKFLQEKKNFAILTPFVNQRKLILQKMPALRN EECVFTIHSSQGQEFDCVIFSPVTLNYYLNDSRNPQALFALNVALSRAKKEIIIVCDKNY WLNQKGQFLNALIQISKPFSLSQT >gi|197283037|gb|ABQU01000013.1| GENE 34 28145 - 29260 989 371 aa, chain - ## HITS:1 COG:HP0898 KEGG:ns NR:ns ## COG: HP0898 COG0409 # Protein_GI_number: 15645516 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Helicobacter pylori 26695 # 5 368 3 370 370 452 57.0 1e-127 MNPYIDTYRNPQKIKETFLAIQTLSKKLKKPIKIMEVCGGHTHTIMKYALPQLLPNNIEF VHGPGCPVCVMSKSRIDCAYKIASQKDVILVTLGDMIKVPGSYGSLQEARAKGLEIIFVY SPLDILKIAQNNPTKKIVYFAIGFETTTPMTAALLRKVIELDLKNVFFHINHILVPPPLE AILGDKNCQIDALLAPSHVSVITGSKIYESLVQKYQIPIVICGFEPIDIGESLLSILHQI INKTPKVETQYTRSVSYDGNLKAQKLIQQYFTLDDGFYWRGLGEIPHSSLKLKDEFSQFD AGIIFKDYLGGIPKEEHKNCLCGEILKGNKKPYDCKLFGKACNPQNPLGSCMVSSEGACA AYFKYQGIQPE >gi|197283037|gb|ABQU01000013.1| GENE 35 29316 - 29771 330 151 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310633|ref|ZP_04809788.1| ## NR: gi|242310633|ref|ZP_04809788.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 151 1 151 151 239 100.0 5e-62 MLKKILTFFILGFILFFISNCSKSPTIAPANPSIPYPKITYAKELDTSIIPTDFPKTFEN RFKILFSQNPNPNIQEIRYYFTHFYNESQGDYSPRSSFSMLPRYLLELNIQVLTHNTDKL YKQYYEIPIALFNPMYDQHFDFLIQKALQTQ >gi|197283037|gb|ABQU01000013.1| GENE 36 29823 - 30713 789 296 aa, chain + ## HITS:1 COG:Cj1102 KEGG:ns NR:ns ## COG: Cj1102 COG0130 # Protein_GI_number: 15792427 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Campylobacter jejuni # 19 296 1 272 272 243 48.0 5e-64 MYGVKDSSIKIYVFKGEILNRIFVAKKPLFVSSNGYLGFLKRRDRIKKAGFSGILDPFAC GTLVVAYGQYTRLFPFLPKNPKVYQATLWLGLESDSLDIENVKKIHHIQRFSEEYLEDLL KKFCGEISFVPPKYSAKKIDGKKAYELARAGQKVQLKEQTMEIFKIEFLNYSHPFLSFKV WVSEGSYIRSLGELIAKELGCMGGLSYLERLSEGGLVYENEKNLNPLEILGLPKILIEKN QRNILEEKVKNGKKITQEELKIHKDGKYIVQFEDFFSIISKQEREIQYLANRIPLC >gi|197283037|gb|ABQU01000013.1| GENE 37 30707 - 30937 302 76 aa, chain + ## HITS:1 COG:jhp1335 KEGG:ns NR:ns ## COG: jhp1335 COG1551 # Protein_GI_number: 15612400 # Func_class: T Signal transduction mechanisms # Function: Carbon storage regulator (could also regulate swarming and quorum sensing) # Organism: Helicobacter pylori J99 # 1 66 1 66 76 63 57.0 7e-11 MLILSRKENESVTIGDDITIKIIGIDKGSVKIGFEAPPHLLILREELKMAILEENRKSLS HKEDNLNQLVGAKKKI >gi|197283037|gb|ABQU01000013.1| GENE 38 30938 - 31693 577 251 aa, chain + ## HITS:1 COG:jhp1336 KEGG:ns NR:ns ## COG: jhp1336 COG1947 # Protein_GI_number: 15612401 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Helicobacter pylori J99 # 5 250 8 261 274 145 35.0 5e-35 MIKSYAKINIFLKITGRMLFENVNYHTLLSRFMLVKSLFDEIEITEGSGGFEVYGDFDCP MEKNTIFRAFIEILPFLDKEKQKYLNNLKVEVKKRIPSGGGLGGGSSNAASFLLWVNKQL ELKWDFKKMCEIGQKVGSDVPFFLSEYEIADVSGRGENIQQSKEKSFEVQIVHPKIHCDT AKVYQAYAKEFYAPTQMNWFGFSNEAILKQSPYENNDLLKPVLKLYPSLLEYPKNGYFLS GSGSCFWKIRE >gi|197283037|gb|ABQU01000013.1| GENE 39 31695 - 32153 488 152 aa, chain + ## HITS:1 COG:Cj1105 KEGG:ns NR:ns ## COG: Cj1105 COG0691 # Protein_GI_number: 15792430 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Campylobacter jejuni # 1 150 1 150 150 155 59.0 2e-38 MKIIATNKKALYDFFILEKYEAGIELVGSEVKSIRAGRVNLKDSFVKIVNGEAFLFQAHI SVLDTTNRYYKPDEKRPRKLLLHRKEIDKLFGKSQVGGMSIVALKLYFNKRNKAKLEIAL AKGKNLHDKRESLKEKIQNREIAQTLKEFQRR >gi|197283037|gb|ABQU01000013.1| GENE 40 32163 - 32645 608 160 aa, chain + ## HITS:1 COG:jhp1338 KEGG:ns NR:ns ## COG: jhp1338 COG0811 # Protein_GI_number: 15612403 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Helicobacter pylori J99 # 6 141 1 136 150 145 55.0 2e-35 MFGLSLKEIVEYGVIGILVLMSIIALWAVFERLLFYRYIKLVLYDNKTELEIELSKNLTL IATIGSNAPYVGLLGTVFGIIMTFVQIGQSGMVDTTSIMTGLALALQATAGGLLVAIPSI IFYNLLMRKSEVLVAKWEILQEKKQSGNYSLKELEENKGR >gi|197283037|gb|ABQU01000013.1| GENE 41 32663 - 33034 503 123 aa, chain + ## HITS:1 COG:HP1446 KEGG:ns NR:ns ## COG: HP1446 COG0848 # Protein_GI_number: 15646055 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport protein # Organism: Helicobacter pylori 26695 # 1 123 4 129 133 90 38.0 9e-19 MDTINIVPFIDIMLVLLVIVLTSATFIAQGKIPISIPQAEGSESTKENLKSVEITINAQG EYFLDKNQMNLEGIRNALLEMPKDTPILLRGDQKSYFEKFIALIGILNSIERVNVDIQVE QMR >gi|197283037|gb|ABQU01000013.1| GENE 42 33034 - 33219 93 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310640|ref|ZP_04809795.1| ## NR: gi|242310640|ref|ZP_04809795.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 61 1 61 61 103 100.0 3e-21 MFKESYDISTIISAIVTFLLILLVVRFILFLANRKKTQIQKPDWLEGDERFEIKKGRRKG K >gi|197283037|gb|ABQU01000013.1| GENE 43 33221 - 35809 2690 862 aa, chain + ## HITS:1 COG:no KEGG:HH0118 NR:ns ## KEGG: HH0118 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 3 629 5 637 639 231 29.0 9e-59 MENILINIIFTIIMLGLAVWDFVSYGKQKHRDFKSIIMSTGVLGTFVGIFVGLQDFNVNE IEKSVPFLLEGLKTAFYTSILGMSLAIILAIIQKGRAVKSDFENMMDYFSLQVSKLDELN KIKDIVEYGKKNLDFQREYYNTQKDNFSKIESYFHLSNQTLKEAMQHLAQGASKELISAL EGVIRDFNKRITDQFGDNFKELNAAVSQMILWQSNYKDSIVQLDENLKNTLKVFCITQES LEMIAKRNEEVLGVYNALAHTIESSRIENEKLSGLLAGFKDMHKDASSALGAVNELIQVL QEAHLQALNHTQNNMSEIRGFLTQTLQEHKSTTKEVLAENLKVLENDYLKASENLLSLQK QFEEFNSQYLTQNKENLQNAISEFEESNIELKNRNLEMMGQTQENIQKYLESIKQDYLNS LSALKEIQQESLLLIEEQAKQSNHILTQHTNNLEVSLKDVGANLEEMSAKVATNLTKNSE TLEQHMTNAVLNFDALLGNTTKTLQENLQETKNTLVALSKEIEDAMSVVTKSLDSLLNDT ANSLSKSTQNIEESLVFANQTISDSFSQTAQEIGKSVHNLLEYNQKNSQEIQEIMKKNAA TMDANLTQMTQNVQKYYQEIQDKMRASFGESYKNAIESFGAYIKNSTNAYQNQLVKFSQN NLEVILKNHSQSLESHEKIHANLQQTLMGIVESFNAESKQVIVSAKKFSQELLSASGEQL KEHSSEVIKQYSQLELKIKDSLQEMAQHYLGMLSTLTQQSIELPKNVSVELLNEFNKLQK NLGEALEKTYFSLESSHKGIEEILRIIQSNVSSSLTQTSNLNENLCKSLGELDGALSNIT LGFRQDYEWFLRRIKELMGARN >gi|197283037|gb|ABQU01000013.1| GENE 44 35809 - 36537 470 242 aa, chain + ## HITS:1 COG:ECs5257 KEGG:ns NR:ns ## COG: ECs5257 COG2885 # Protein_GI_number: 15834511 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Escherichia coli O157:H7 # 11 234 19 233 235 156 38.0 3e-38 MTNNLNKGSEWISISDMMAGVMMIFLLIAVVYMVVISKAEKRLATQNAELLELNKQMSDI AKTYKNLQAELYGDLVAEFSGDLEKWNAEIDEDNTVRFREPEILFDQGKKEVKLRFKQIL DDFFPRYVNILTQPKYKGDIEEIRIEGHTSTEWQNAKSLEDRYLGNAELSQARALEVLKY CFNNTQIKEDKQWLIGVLRANGLSFAKPLESVELSRRVEFRAITKSNQKILEILDVNKEK QN >gi|197283037|gb|ABQU01000013.1| GENE 45 36547 - 37242 463 231 aa, chain - ## HITS:1 COG:Cj0086c KEGG:ns NR:ns ## COG: Cj0086c COG0692 # Protein_GI_number: 15791474 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Campylobacter jejuni # 1 230 1 230 231 305 62.0 4e-83 MQDISISLDKLKIEESWKEALKEEFFKPYFLEIKRNYIAAKSSGKTIYPPANLTFNAFNL TPFDTLKVVILGQDPYHNPHQAMGLSFSVPKGIPLPPSLKNIYKEITNDLGIPPSQNGDL SQWARQGVLLLNSVLSVEHNKPASHQNFGWQTFTDNVIKTISNQKKGIVFLLWGNYAKAK KNLIDSSKHFILEAAHPSPLARSGFLGCRHFSQTNAILESLHKSPINWQID >gi|197283037|gb|ABQU01000013.1| GENE 46 37242 - 37532 453 96 aa, chain - ## HITS:1 COG:jhp0909 KEGG:ns NR:ns ## COG: jhp0909 COG0721 # Protein_GI_number: 15611976 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Helicobacter pylori J99 # 1 96 1 93 93 60 37.0 9e-10 MNINDELLKKLQNLASIEIQPNNLETTKANLNEIVHFVENINKLDLEDIPASFNPINSKL PMREDIPQSKSEIASDTLKYAPNSEENFFIVPKIIE >gi|197283037|gb|ABQU01000013.1| GENE 47 37529 - 38176 564 215 aa, chain - ## HITS:1 COG:AGl784 KEGG:ns NR:ns ## COG: AGl784 COG1309 # Protein_GI_number: 15890508 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 13 205 32 220 228 65 23.0 7e-11 MKLEKLSKKNQEKYSKTLEIAYQFFLKYGYEKTNLQMIVKETKGSLATIYKIFGNKRNLF QEVIEQKNQDFFCSLEKIFTHAQSLELSLEDFIILIGKKLLNEIFTPDAIALNRLIFVEG YNNSELLDTFKVSCIDKTLFYFSKYLETYAKKEKVDIDDIQETSRICVDLLISHHLLDSL LDSNYIPPSEEEIDKIAKKATKIFLLYLNHNKEIQ >gi|197283037|gb|ABQU01000013.1| GENE 48 38326 - 38799 487 157 aa, chain + ## HITS:1 COG:Cj0581 KEGG:ns NR:ns ## COG: Cj0581 COG0494 # Protein_GI_number: 15791941 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Campylobacter jejuni # 6 157 5 156 156 207 65.0 5e-54 MRKETKTYRPNVAAIILSPKYPLTCELFIASRADIKNAWQFPQGGIDKTETPREALFREL KEEIGTDKVDIVAEYPEWISYDFPSSVVKRMYPYDGQIQKYFLVRLQEDGVIDINTEEPE FDKYKFVTFEDLFNHITYFKRPIYRQVLEYFKKKGYL >gi|197283037|gb|ABQU01000013.1| GENE 49 38799 - 40004 1477 401 aa, chain + ## HITS:1 COG:jhp1150 KEGG:ns NR:ns ## COG: jhp1150 COG0527 # Protein_GI_number: 15612215 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Helicobacter pylori J99 # 1 401 1 405 405 522 71.0 1e-148 MLIVQKYGGTSVGDCQRIQNVAKRVVESKKRGNSLVVVVSAMSGETDKLLGYTKFFSRLP KEREVDMVLSAGERITSALLAIALEEMGYKAISLSGRGAGIVTDEFHTKARIEEVDTAQL NELLAKDYIVVVAGFQGITRNGEVTTLGRGGSDLSAVALAGALQADLCEIYTDVDGVYTT DPRIEPKAKKIDKISYDEMLELASMGAKVLLNRSVEMAKKMNVNLVTRSSFNHNEGTLIT KEEEIMEHPIVSGIALDKNQARVSICNVEDRPGIAAEIFGALSEANINVDMIVQTIGRDG KTDLDFTIPEVELESTKRVLKAFEGSVESIEYDSDIAKVSIVGVGMKSHSGVAAKAFQAL AEDNINIMMISTSEIKISMVIRLKYAELAIRTLHSVYQLDK >gi|197283037|gb|ABQU01000013.1| GENE 50 40004 - 40549 560 181 aa, chain + ## HITS:1 COG:no KEGG:WS1730 NR:ns ## KEGG: WS1730 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 181 2 182 183 180 48.0 3e-44 MQDIVSWTTQTLRRDESRLTWLEERKFEWIPLIKRVLQRIFNGESLILVTDKDREWFSNY VIFSINKSSNRPYVPILGINALFPQVDRNCKDEIEISLINDYLDNIFSQGYFFWYVGKND ALRAKLALSREDCFLWMFDTELQNSFTLQSVDSLVDIKLMQMYRIFNLTIEAAMFGQISL E >gi|197283037|gb|ABQU01000013.1| GENE 51 40551 - 41192 567 213 aa, chain + ## HITS:1 COG:Cj0584 KEGG:ns NR:ns ## COG: Cj0584 COG0470 # Protein_GI_number: 15791944 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Campylobacter jejuni # 37 204 36 199 199 75 33.0 7e-14 MQKLTTHILLVNNPIQEANEYYQRQNPQNCRIFCAEELSIEISREIIDESYIAADGEKII LIAANAFNIYAQNALLKILEEPPKQVYFILFAKMKSQLLPTIRSRMPIFNHTNKEKMPNF PLNVETLSLREIYPFLKDKAKDYISNATTLKTEIQSLYLDSINAGLQFNQEEMQMFEEAL LWAGQHEKAYNIFCVLLLMISNKKRQKMQGNIQ >gi|197283037|gb|ABQU01000013.1| GENE 52 41222 - 42352 949 376 aa, chain + ## HITS:1 COG:jhp1153 KEGG:ns NR:ns ## COG: jhp1153 COG0294 # Protein_GI_number: 15612218 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Helicobacter pylori J99 # 15 376 15 377 380 325 47.0 1e-88 MEIFVKAIQDTTKELKQIQCDEMGYKILKDKTKVFGFYIYGLKTPAAQILKQESLACGGD FALPKDAILYKQESYNGILMVTKSQSKALLKKLKIQPFGLKEVAKSLEEHLNLVDFPTQI MGIINATPDSFYQDSRKDSKEAQERILEMIKEGIDIIDIGGASTRPGSAWITEQEEMNRI KPIVEFIAANELYQKVKFSIDTYTPKVARYCLENGFGMVNDITGFSNPKMLEAVCGYDCE CVVMHMQGNPKEMQKNPQYENLFLEIDSFFKERIEALRKCNIQKIILDVGIGFGKILEHN CELIKNLRHFKHFGMPLLVGASRKSMIDKIVSTKVEERLAGTLAIHLEALKNGANIIRCH DTKEHIQATKVWGALQ >gi|197283037|gb|ABQU01000013.1| GENE 53 42354 - 43331 978 325 aa, chain + ## HITS:1 COG:no KEGG:WS1733 NR:ns ## KEGG: WS1733 # Name: glyS # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 322 3 325 329 120 30.0 8e-26 MERKELIWQLKKHGHSQESLEAMPFNELVKLFKTESKRNILEYMQAIKEEKHTEIIAEDN TSLIEEELGKIRHSIIGEDINYEALYEGIENIFAHYGLNESIELVLTQVRDGRYKQITRI IELAYRAYQEELLDTLDQLFADYPQEERMEQMKFYSSKREDVQFLKETIRTIQSGNNQKN LSMIAQLKCEIIKDYFPDSLYENYEEYYENEEEKNEIIERIMKLTNAYKRPILKRKKRQV LQHIERVLIKDKEREKEEKILIKKYNKEIGEAITNEDELGFSNLIREALEVLDERDVRRI VSNLDISSNPVLSQYFNTILKEARH >gi|197283037|gb|ABQU01000013.1| GENE 54 43392 - 44468 917 358 aa, chain + ## HITS:1 COG:HP1044 KEGG:ns NR:ns ## COG: HP1044 COG1408 # Protein_GI_number: 15645658 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Helicobacter pylori 26695 # 7 355 19 364 370 226 37.0 8e-59 MHGLIYFMFIRRIITPKIPRLVIKYFLILNFLGVVCYFFGRYYWDMPQSLYFLVSLSIGV AFILFVVTLLYQPLLLIPYFSKKRRGFLRNGINIFSGIFAGGYLGFGVIEGRMQPKVENV EIPLPNLQESFGAVQISDLHIGGLIEENVVRGIVKQVNDLKPDVIFLTGDIIDTEVSKVQ KAMQELSKLQAPLGVFFVTGNHEFFHNIGELLESLKKYGIRVLENENVVLYKNNQALVNV AGVYDLFGRRIGVLEPNLEAALQGRIETLPTILLAHQPKFALEIKESQKIDIMLSGHTHG GQIFPFRFLVILDQPYLSGLHQHSPNTKIYVNRGTGFWGPPMRILARSEITFFHFTRG >gi|197283037|gb|ABQU01000013.1| GENE 55 44535 - 46925 2395 796 aa, chain + ## HITS:1 COG:no KEGG:WS0490 NR:ns ## KEGG: WS0490 # Name: pflA # Def: flagellar functional protein # Organism: W.succinogenes # Pathway: not_defined # 9 784 1 777 778 529 38.0 1e-148 MKVSKKNILFLLCLATNYAFGLEFYINSGREDSRDFAVLNLVDSKPFVCQEKYNRESEVE SIVCEFDSNLISRFSKTNTLFFEIIPEIGENKFFLKIIPKNKIKLFNAGINLASHNPIPQ ERSTESTRWQIVGYKEKIPFLLERESEGLNFPISFDEPYLGVGVLDFRMRPMDNEVGQDK DYFLNIQSLLEKKSYQEALNNIDEMLQNYPETIFKRDILFMKLKALQNLQNQEDYEEIMA LGKAWLNAYPADIHVPEVLLLMAENYAKMNFFEEASYYYDRLFKEYKDDKYELLARLSYG EKIFKRGDKKRALELYQSVLNQTQDLEIASLASLLLGEYYKDAGESKQAQDYLKNILDAN PQYFTKDVAKNYAILQKWAESNIYEIPAQVAEVMFLSLKDDDLPFYRPLLKDMAQWYDKS GNLQKAHHYYQMLLQNPKDEAEEKEIQALDDTLLLNYEDDNATKRLEHYDYVIKTYQGKN EEKEAWNKKAETLYELQRYQDIFDIRDVLGEDNSIVLKAVGELTRESLKQNKCKEAAYYG SLYDKKIPLNAQEKIQLFDCLYENRQFIPALEIAKEQLQGAKTPNEKEDWLYRLAWSEYS VQDYPKAILASRDAVKMLSKEKYNDGLWVLFMALEQEGRREEAFELLPILEEKLKDDVKM IEIYRVMLLDALNKRDDTAIKIYGNHLLALQEKYQKYEYSPWVELSLVEALNREGKFQES LEILQKAQTHIVAPKEQIQIFYLQGYLNAKIGKIEEAFTSYDKCEAIKEQSPWKNLCIEA KKLLELENPRKENNGE >gi|197283037|gb|ABQU01000013.1| GENE 56 46915 - 47142 307 75 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310654|ref|ZP_04809809.1| ## NR: gi|242310654|ref|ZP_04809809.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 75 1 75 75 84 100.0 3e-15 MENKNKKEIESKNFENYLQEINQCLEELNDENIGLHKSMEVYKKGMEYLKEAQKMLENAQ LECNELKMQFEKKEE >gi|197283037|gb|ABQU01000013.1| GENE 57 47142 - 47918 711 258 aa, chain + ## HITS:1 COG:HP1481 KEGG:ns NR:ns ## COG: HP1481 COG0388 # Protein_GI_number: 15646090 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Helicobacter pylori 26695 # 1 258 1 260 265 171 39.0 1e-42 MKIATLQLSSPKMQREIKTYLDIALEQKVKIVLFGEYFFNPFFKVIERDKKNQLILKLKK ESENLMQISNEYPMIFVAPLLETVAGKIYKSMAIINKGKALQYRAQRLMPYEHWNEAKFF ANTLSKNIKTPPIFSVGGFKFSVLFGYELHFDEFWLKFKQNNVDCILLASASTFDSSLRW RNIIKMRAFLNSSYILRANRIGQYQDEVTNTLWNFYGDSLLVNPNGEVEDCLGDREELLI ANLDKKYLKEIKECWKFR >gi|197283037|gb|ABQU01000013.1| GENE 58 48029 - 49876 2225 615 aa, chain + ## HITS:1 COG:jhp0081 KEGG:ns NR:ns ## COG: jhp0081 COG0568 # Protein_GI_number: 15611152 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Helicobacter pylori J99 # 5 613 69 679 681 706 70.0 0 MSAKNINQQLDELFQSSSKYVSYEKIAQVLIKLPTAAQAKRVTELAKKYNKQLMSASEVA KLLNQDEARRIKEDKKRLLDEELEDEFDFMKERELLEWSRSDSPVRMYLREMGQIPLLTR EDEVELSKNIELGENIILDAICSVPYLIDFILDYKEALINRERRVKELFKSFDDEEDEES VESEEEELEEGEEESEGKKPISKKDQKRVEKVLVSFKALEKAKKDWLKTWEQEKGEENGD MLYLLTLAHKKQFLKEKLLDLGPTSKLITELVKAMENTIKSDEGFERELKRLEYRLPLFN DILLANHKKILDNIIEMSKSDIVAAVPEATMVSTYMEIKKLFQTKVASEESFDLEPEKLK QILEQIKRGKDIADRAKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKF EYKKGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRINKIMRKYLQEEGKEPD IEKIAEEVGLPVDKVKNVIKITKEPISLEAPIGNGEDGKFGDFVEDKASLGPMDSILKED LKAQIDDVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKL KHPKVGRKLKNYIED >gi|197283037|gb|ABQU01000013.1| GENE 59 49945 - 53463 3374 1172 aa, chain + ## HITS:1 COG:jhp1353 KEGG:ns NR:ns ## COG: jhp1353 COG0587 # Protein_GI_number: 15612418 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Helicobacter pylori J99 # 16 1172 7 1209 1211 1362 59.0 0 MSKTPDEVISQDKIPFTHLHLHTEYSLLDGLNKIKILAKRIKELGMDSVAITDHGNMFGA IEFYKAMKEQGIKPILGMEAYLHNAEEISDKSNQRFHLCLYAKNLQGYKNLMYLSSQACL YGYYMKPRISKKMLREHSEGLICSSACLNGEVQWHLNLKKEDNKGRKGYERAKEVALEYK EIFGDDFYLELMRHGIEEQQLIDKQIIQISLETGIKIIATNDTHYTNQGDSTAQEVAFCI GFGKDFNDPNRMRHTVQEFYIKSPEQMAKLYMDLPEAIANTKEIADKCNLELHLGDPTPP SFKFTAEYAKAENLDFTQDSEYFAYKCREGLKKRLENVESSRHQEYKERLEKEIEIINKM KFPGYMLIVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPMKYDLLFERFLNPE RVSMPDIDMDFCQSRREEILEYVTDKYGRHNVAQVITFGMMKAKAVIRDVARVMGMPYGE ADAFAKLIPKELDITLEKAFEKEPKIKELIDKDPLAKKIWDFAVVLENTKRNPGTHAAAV VIDSEHELWHKAPLYRSTRDGIIATQYSMKYLEDVDLIKFDFLGLKTLTLVDDALKLIKN RHNLEIDFLKLDVNDKKVYETLQSGNTLGIFQIESSMFQGINKRLRPSTFEDIIAIIALG RPGPMESGMVSDFIDRKHGKAPIVYMFPELESILRPTYGTIVYQEQVMQIVQKIGGFSLG EADLIRRAMGKKDAQIMADNKNKFAQGAEKQGFNRAKAEELWELIVKFAGYGFNKSHSAA YAMITFETAYLKTYYPKEFMAALLTSEKNSTDKIVEYIEEANKMDIKVLPPNIQKSELEF SVARIDDEDCILFGLGAIKGAGEVAINIILEERKNNGDFKDLEDFLSRIDPQKVNKKSLE AFIKSGAMDCFGYTRRTLLEQVELLTENAKTAQIAKKEAENSLFGDSEEFTAIALELENK EEYSKKEILEFEKESLGFYASGHPLEDYKEIIKSINCAYTNQIQDIAENSSILLVGSIED VITKFSKSGKRYGILKLQDFYGSVELTIFEKTLLALEGMDREIPIAVKCFVQEQNDTKSL RAEKILTLEEAQKEKVEFTMQKADTSEPLVLLLSVGLNERVISSIREAAMRHHGKRELRI LFKTQTQELEMVSSFFVHSQIKEELKELEWID >gi|197283037|gb|ABQU01000013.1| GENE 60 53451 - 53822 300 123 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310658|ref|ZP_04809813.1| ## NR: gi|242310658|ref|ZP_04809813.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 123 1 123 123 200 100.0 2e-50 MDRLDLSNLKIGANFRDEIDTLCKKCENLKSQCQCQKIVELKSRDSYFLWINKQKKSGKE VTLCGIFFENKEVLENLLKSIKKKMACGGVLRQEEGGYVMEFQGEHLQSLKEMLKKEKFR FKK >gi|197283037|gb|ABQU01000013.1| GENE 61 53828 - 54580 621 250 aa, chain + ## HITS:1 COG:HP1459 KEGG:ns NR:ns ## COG: HP1459 COG1187 # Protein_GI_number: 15646068 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Helicobacter pylori 26695 # 1 249 6 255 262 260 53.0 2e-69 MRLNQYIAHHSKYSRREADRLIAQGKVSINKEIIKDFSYQVDDKVKVYVNGKCLRKSEEY TVIVYNKPKGELVSKKDDRGRRTIYESLPKRFAHFIPVGRLDFASEGLLLLSDDARVVTK LMESKMERIYLLKLSGKIQEEVFEAMENGLSLQDARAGGHKESKIQSMEFAPFLGYWVLK NSTRYSKIKVAINEGKNRELRRFFAHFGLEILDLKRISYGFVSLNNLPTQKVRFLERGEY NKLHRFMEDD >gi|197283037|gb|ABQU01000013.1| GENE 62 54577 - 55110 472 177 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 [Burkholderia pseudomallei 305] # 6 177 2 189 194 186 52 3e-46 MKKAKIGILTLSDRASAGIYEDISGKAIIETLTEYLTSPWEKVYCIIEDNQQTIEAKLIQ LSDIEKCDLIITTGGTGPAIRDVTPEATEAVCQKMLPGFGELMRQTSLQYVPTAILSRQT AGIRNQTLIINLPGKPKSIRECLDAVFPAVPYCLDLIGAAYLETNENIIKAFRPKSS >gi|197283037|gb|ABQU01000013.1| GENE 63 55107 - 55592 497 161 aa, chain - ## HITS:1 COG:Cj0841c KEGG:ns NR:ns ## COG: Cj0841c COG1763 # Protein_GI_number: 15792179 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein # Organism: Campylobacter jejuni # 4 161 6 160 163 107 44.0 7e-24 MKAVAFTGNSNSGKTTLIQKLTLLLTPKKSVSIIKHDPKNKANIDTEGKDSDIFYKAGAN VAILSPIQTTFRFHHSFDLDEAIQKFGHCDYLFVEGLKEIPLPRICVAREMIDERFFPYI DAVAIDSSISKDSIPKHLAILNLNQPQEILEWINANIKDYK >gi|197283037|gb|ABQU01000013.1| GENE 64 55589 - 56029 440 146 aa, chain - ## HITS:1 COG:HP0800 KEGG:ns NR:ns ## COG: HP0800 COG0314 # Protein_GI_number: 15645419 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin converting factor, large subunit # Organism: Helicobacter pylori 26695 # 3 145 2 144 145 143 51.0 1e-34 MGLEIFDTPLDTTTIYQNWYFFSTQNNLGANAIFTGIVRAENNCDGLSFDIYEPLLNQWF LNWNKKALQKGAFLKMAHSRGDVPNHKSSYMAGIFSSKRRVCLELFEDFIEDFKHKAPIW KYDLKEGKRIYAKDRSYKLPFSGILQ >gi|197283037|gb|ABQU01000013.1| GENE 65 56045 - 56266 287 73 aa, chain - ## HITS:1 COG:Cj1517 KEGG:ns NR:ns ## COG: Cj1517 COG1977 # Protein_GI_number: 15792830 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin converting factor, small subunit # Organism: Campylobacter jejuni # 1 73 1 73 73 82 56.0 2e-16 MVTIELLGPLGNKSLTSEAKNFYELKQELQKDTEIQKWLQHCAIALNGEIISSLDISFKD GDKIALLPPVCGG >gi|197283037|gb|ABQU01000013.1| GENE 66 56293 - 56646 257 117 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310664|ref|ZP_04809819.1| ## NR: gi|242310664|ref|ZP_04809819.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 117 1 117 117 190 100.0 3e-47 MKFISLSSKIKFLASVCCTSALLLSNAYADNFVQVHPKPQHKIQPPTKIDRTIQNEIQKH PKNTAFIIDARTGKILSTVPLKNFNTKKSPKIIPQKTPPKNNKILPYKMKEERLELL >gi|197283037|gb|ABQU01000013.1| GENE 67 56729 - 57103 489 124 aa, chain + ## HITS:1 COG:BH0063 KEGG:ns NR:ns ## COG: BH0063 COG0251 # Protein_GI_number: 15612626 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Bacillus halodurans # 2 122 1 122 124 146 60.0 8e-36 MLKIVSTNQAPQAIGPYSQAICVNGMVYTSGQIGLTPSGEMVQGIEAQTRQVLENLKAIL KNAGSGFDKVVKTTIFLSDMDNFGIVNGIYAEFFGEHKPARSTVAVKSLPKEALVEIECI ALSN >gi|197283037|gb|ABQU01000013.1| GENE 68 57199 - 57510 515 103 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523064|gb|EEQ62930.1| 50S ribosomal protein L21 [Helicobacter pullorum MIT 98-5489] # 1 103 1 103 103 202 100 4e-51 MYAIIQNGGKQYKVSEGDILLLDCLNLEPKSKVEVTEVLALFDNGDVKLGSPYVSGAKVE LEVINEGRGKKVITFKKRRRKDSKTKRGFRRDFTRVRVIKIAA >gi|197283037|gb|ABQU01000013.1| GENE 69 57533 - 57790 441 85 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523065|gb|EEQ62931.1| 50S ribosomal protein L27 [Helicobacter pullorum MIT 98-5489] # 1 85 1 85 85 174 100 1e-42 MAHKKGQGSTQNNRDSAGRRLGVKKFGGQFVRAGNIIIRQRGTKVHPGNNVGMGKDHTIF ALIDGIVSFERKDRNRKKVSIYPAS >gi|197283037|gb|ABQU01000013.1| GENE 70 57843 - 58931 1262 362 aa, chain + ## HITS:1 COG:jhp0288 KEGG:ns NR:ns ## COG: jhp0288 COG0536 # Protein_GI_number: 15611357 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Helicobacter pylori J99 # 1 356 1 360 360 340 58.0 2e-93 MFVDRVEIFVSSGKGGEGAVSFHREKFVINGGPDGGDGGKGGNVYFVVDRNTDTLSHFRG HKHFKAQNGKPGLGRNKYGKKGEDLIISVPPGTQVFDVESGKLLLDLLEESQKILFLEGG KGGLGNAHFKSATNQRPTYAQKGMPGVEKNIRLELKLIADVGLVGFPNVGKSTLVSVLSN AKPEIANYEFTTLIPSLGIVNVGDYQSFVIADIPGIIGGASEGKGLGLEFLRHIERTRFL LFVLDIANYRDINTQFDILQKELKNFSQELAMRPFGIMLSKSDTQENKQEILEEFLKSEG LTLIPHSKIPYCFISRDKEDFTSPKDISKPMFVVLVSSVGGENIDSLKHLLYECLQENKE EK >gi|197283037|gb|ABQU01000013.1| GENE 71 58931 - 59707 909 258 aa, chain + ## HITS:1 COG:Cj0097 KEGG:ns NR:ns ## COG: Cj0097 COG0263 # Protein_GI_number: 15791485 # Func_class: E Amino acid transport and metabolism # Function: Glutamate 5-kinase # Organism: Campylobacter jejuni # 4 256 2 250 251 239 50.0 5e-63 MQKKRVVVKVGSAILVENQLINKTRMEALVKLIAKLRDKYEVILVSSGAVAAGYTKIKLD KNHLPNKQALAAIGQPLLMQTYTDLFAPYGIVVAQVLLSAYDFDSRKRTQNARNAMEVLL QSNVLPIINENDVTATGELSLLLEFGDNDQLSAHVAHFFNAEILAILSDIEGYYEENPII NPNAKIYPKVEKISQEELKAQTTPNNIFATGGIVTKLKAADFLLKNNRKMFLSSGKRLEI LEKFLLEGIQLSGTLFAN >gi|197283037|gb|ABQU01000013.1| GENE 72 59982 - 61310 837 442 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310670|ref|ZP_04809825.1| ## NR: gi|242310670|ref|ZP_04809825.1| glycosyl transferase family protein [Helicobacter pullorum MIT 98-5489] # 1 442 1 442 442 904 100.0 0 MEKKTCVFLACNENYAFALANVIIGLRRYNEDLITNIVVYHDITEETRGKISRLWENKII FIEYTHEDFLRDLGGDIGKVPLTSRFGERFVYAKFHIFELLEKYDCAVWLDCDTLVVDRI KDFLCLDEIDFKCDCGGRIDGATKYLEAKGLLNTNKPIMKPVGGVLSFSKQCLNKTYCGV SGINLTQQCFKILKELYKYECLIYPATSDEIPFGILTYLYDFKVQNKKGFYNTLPQSSRN SNIIHTMGKTKFWESPFSYVAFSEWAINHKIWKNISGDERQFSLRSLNFGSMDTPDKVYL FLIYYHLFCPLLPLLQDFIANNAQYKLYLKLPIKDRYLDIYSKRFQGDIFYRFALNLDGG GNAELKSKCEIQIVCKEKGKLRYFANEVQRRLDETYTLKDNRSNGEIIVYYFTKNIEIDY SDLMLEFKGLVEQTCWIVEDLQ >gi|197283037|gb|ABQU01000013.1| GENE 73 61314 - 63545 1750 743 aa, chain - ## HITS:1 COG:Cj1442c_1 KEGG:ns NR:ns ## COG: Cj1442c_1 COG4092 # Protein_GI_number: 15792760 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted glycosyltransferase involved in capsule biosynthesis # Organism: Campylobacter jejuni # 1 343 1 335 336 315 49.0 2e-85 MALLSIIIPFGTSKERPYIKERVIQKARKYKSNEKVEYIFVEGFSSLVCKEIPLIIAECG HEYYKDEKQQKMGAYSLGQCRNLGVMYANSPAVMALDVDCYLSQKNLEKLLEIIQIKGID KNPNTFLVLPCAFLKEEGNEFLLSKPEEMWDSLVGFDVQSGANKLVKFYSPASSSMVLNR HKYLEIGGNDNAYIGHGYEDFDFMMRVFKSCAVFEKMPMNLDFDFRNWSFDSFKGFRAWF SIVGNEMAAFGIYLYHFWHIEPNQNNYLDNRELNHQKFYKNLKRFNNLYDGPDCLQDKRA FGHRILFFGVYDSAATNCVRGISIYLGEIVCKREFEFFSGDEFLEQKFMKFLKKFEISYV LFPNPYGNTMRLSIYEFVRKMGIAYVCWERGALPDSWFFDTNGFNYDSSSYDEKHWNKPL SIEDKEATEKYIKELLVGKNTLESQGDSLGVLELRRKLGIRHKRVVFVPLQVHTDKVIEY FTYEPFSFWGFLEIINKIAGELANDDVVFLAKKHPLMLEVTKEKYPNLTFVADNTNFLDL LNLCDMTVMINSGVGVYAMMNEKPCVLCGNAFYRFSKLNLQAKDEAELKRHIVDILENRF SFDRDKMLRFIRYLKNEFYSYGVSTKELVKDEKNNKTFHRTKGIDFYKIRFCGEKLLECE SVERFAYKLNNFAYKPYLYEIKNVFPKMANAKSVVATQVAKKVSNEISHTKFYRLFRKLI TRPKDFVMDSKKPLMKPIKLLVR >gi|197283037|gb|ABQU01000013.1| GENE 74 63686 - 64111 440 141 aa, chain + ## HITS:1 COG:no KEGG:HH0918 NR:ns ## KEGG: HH0918 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 134 1 133 136 139 62.0 3e-32 MKVVERINEILKEKNMSKKELANRLINLGMKANKTGEIPTLSSIYAYLNGNIDIKADMIP FIADALGVFEQELFMDKKEKNLKILSKIYSFHTEKNYQQLIELLEYLSPRSLECLEEILY QNKKQVLELNTALESGLNKNK >gi|197283037|gb|ABQU01000013.1| GENE 75 64177 - 65079 640 300 aa, chain + ## HITS:1 COG:jhp1069 KEGG:ns NR:ns ## COG: jhp1069 COG0223 # Protein_GI_number: 15612134 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Helicobacter pylori J99 # 1 300 1 305 305 256 48.0 4e-68 MNIVFMGTPSYAAVILESLLKSHTIKALVCQPDKRAGRDMQLKMPATKELLLKSGLEVPI LQPQALDLDFVDLLKQIQFDIIVVAAFGKILPKEILNLAPCVNLHTSILPKYRGASPIQE SILANEKFFGVTLMKMEEGLDSGDILGMRIIKNHQQNSKELFSELSNAAAILTLQYLEKR DLIVPMQQIGADATYCKKIKKEMGIVDFGDAENLYRKALAYEGWPEIFLKNGLKIKEVVL NEIQSCNLAGEILEITEDKILVGCLQGSVWIGTLQAPSKKAMSAYQYLQGRRLRKGDILS >gi|197283037|gb|ABQU01000013.1| GENE 76 65079 - 65711 363 210 aa, chain + ## HITS:1 COG:Cj0099 KEGG:ns NR:ns ## COG: Cj0099 COG0340 # Protein_GI_number: 15791487 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Campylobacter jejuni # 1 210 7 217 217 197 49.0 1e-50 MKVIVFEELPSTHLFLAEKIKNQEILPPVLVLTHHQSNGIGSRGNVWNEVKKGLYFSFAL YEEDLPEDLALESVSIYFGYIFKEVLAKNGSKVCLKWPNDLYLGQKKIGGILCTKIKNVI LVGIGLNLNAECSEFGDLDIEISREEIINDFIKEIKKYTWKQIFSKYKLEFFQNFNYSFH HKGKLISLKEAQLLEDGSILLKGERIYSLR >gi|197283037|gb|ABQU01000013.1| GENE 77 65711 - 66511 643 266 aa, chain + ## HITS:1 COG:Cj0100 KEGG:ns NR:ns ## COG: Cj0100 COG1192 # Protein_GI_number: 15791488 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Campylobacter jejuni # 5 263 1 260 261 338 68.0 5e-93 MERKMCEVICIANQKGGVGKTTTAVNLAASLAVEEKKVLLIDADPQANATTSLGYHRNSI EFNIYHVLIGTKKISQIIQKTSIPTLFLAPSNIGLVGIEKEFYSQKRNGRELILKKKIEE ASTAYDYIIIDSPPALGPLTINALSASDSVIIPIQCEFFALEGLAQLLNTIKLLKKEINP DLQIKGLLPTMYSGQNNLSRQVFTDLLQHFEGQLIKNNNTENIIAIPRNIKLAESPSFGK PVILYDIRSQGNIAYQNLAKAILKRA >gi|197283037|gb|ABQU01000013.1| GENE 78 66511 - 67404 860 297 aa, chain + ## HITS:1 COG:HP1138 KEGG:ns NR:ns ## COG: HP1138 COG1475 # Protein_GI_number: 15645752 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Helicobacter pylori 26695 # 4 290 3 286 290 231 50.0 1e-60 MAKKNAGLGRGLSAILGEVEEAYQNNLNDNSGLVVEIEIDKIKPNPLQPRKVFDNESLQE LAASIQEHGLLQPILVYEDMDNSDEYFLIAGERRLRASKIAHKESIKAIIVDVQEEKLRE LALIENIQREDLNPIDLAQSYKELIEDYGITHEELAKKLSKSRTQITNTLRLLELDKNVQ KYVLENKISQGHAKVLVALPKEQQNIIANSIIGQKLSVHDTENLIRKLKEGQLQDKKIPS LAQNRISPHSKEQLEKICKAIQKQNLNIKLQKNKIIVEFSNDEEVERFSKILPNISF >gi|197283037|gb|ABQU01000013.1| GENE 79 67473 - 67898 480 141 aa, chain + ## HITS:1 COG:Cj0102 KEGG:ns NR:ns ## COG: Cj0102 COG0711 # Protein_GI_number: 15791490 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Campylobacter jejuni # 7 141 7 141 141 60 34.0 6e-10 MTIIPTPWVMALVFVTFLILVYLLNRILYKPLLGFMEARDSSIKKDSEGIEGNATEIKAL KKEIEEILHNAKQEAALIKNKAQEDAKQKAEAKIAQKREELNIKYKDFVVGLDEEKINLR NSLLSQVPLFKESLKAKLGKL >gi|197283037|gb|ABQU01000013.1| GENE 80 67908 - 68423 483 171 aa, chain + ## HITS:1 COG:Cj0103 KEGG:ns NR:ns ## COG: Cj0103 COG0711 # Protein_GI_number: 15791491 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Campylobacter jejuni # 5 171 4 170 170 99 39.0 2e-21 MKKNIYFLVFVFSPCMLFAASGSGEVDIVERTINFVIFFALIYYFAADKIKAVFKERREG IADSLAKIQEKLQESKKAKQKVMNELEEAKKNAKEIIETAHKESSIILQKSEENTKNEIE HLVRQFNESMAFERRKMEKLVISEILNEFLNQDAVVLNKDILAQALLKKVA >gi|197283037|gb|ABQU01000013.1| GENE 81 68425 - 68961 479 178 aa, chain + ## HITS:1 COG:Cj0104 KEGG:ns NR:ns ## COG: Cj0104 COG0712 # Protein_GI_number: 15791492 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Campylobacter jejuni # 1 176 1 171 173 66 29.0 3e-11 MKELIAKRYIKALSQSLKQKELEESLQILEKLANVCRINKFQEIMDSPYISVEQKIEFIL QVILENKSNSKFANFIRILAEHKRLDLFQELYAELSSYLASLNKEYVAKLMVSDAYDEAV LKEIESKFSQKLGVNLVLEQQITQKNGIKLVVEDLGVEISFSQERFIQDLKNHIFRAF >gi|197283037|gb|ABQU01000013.1| GENE 82 68982 - 70496 2060 504 aa, chain + ## HITS:1 COG:Cj0105 KEGG:ns NR:ns ## COG: Cj0105 COG0056 # Protein_GI_number: 15791493 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Campylobacter jejuni # 4 500 2 498 501 798 81.0 0 MVAKLQADEISSIIKERIDNFELDLNIAQTGKVIAYADGVAKVYGLKDAMSYEMVEFDTG DKGLASSLEEGSVGVVVLGAGKEIKEGTSVKRLGKLLRVPVGDDLMGRVVNALGEPIDGK GAIEAKEYRFMEEKAPGIMARKSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTTV AIDTIINQKGQDVVCIYVAIGQKESTVAQVVRKLEEHGAMEYTIIVNAPASDSAAMQYLA PYAGVTMGEYFRDNGRHALIVYDDLSKHAVAYREMSLILRRPPGREAFPGDVFYLHSRLL ERAAKVSDELGAGSLTALPIIETQAGDVAAYIPTNVISITDGQIFLETDLFNSGIRPAIN VGLSVSRVGGAAQIKATKQVSGTLRLDLAQYRELQAFAQFASDLDETSRKQLDRGQRMVE VLKQPPYSPLPIERQVVIIFAGARGFMDDISVANITKFEADLYPFLEAKYPQIFEDIRSK KMLDKDIEETLSKALEEFKAGFSV >gi|197283037|gb|ABQU01000013.1| GENE 83 70510 - 71397 873 295 aa, chain + ## HITS:1 COG:jhp1061 KEGG:ns NR:ns ## COG: jhp1061 COG0224 # Protein_GI_number: 15612126 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Helicobacter pylori J99 # 4 295 3 301 301 298 57.0 1e-80 MGNNLKDIRKQISSVLNTQKTTRAMKLVSTSKLKKADEMARHSKMYAGKIVEVIAEIKAR VANGENIQDNPYFAPENKEIGLIDIVLITADKGLCGGFNINTIKEVNRIIAEHKAKNMKV RLRVVGKKAIEYYKFNEIEVLDSVVGLSATPDYTQAADFINKAVSDYLQGITSKIILVHN GFKNMISQEMKVSQLLPIESIEASQEQNSILEIEPSEQEKEVLNQLAKKYIEFSMYYALV DSLAAEHSARMQAMDAATNNAGELAKSLTVAYNKARQEAITTELVEINTGVESMK >gi|197283037|gb|ABQU01000013.1| GENE 84 71410 - 72825 1583 471 aa, chain + ## HITS:1 COG:jhp1060 KEGG:ns NR:ns ## COG: jhp1060 COG0055 # Protein_GI_number: 15612125 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Helicobacter pylori J99 # 5 468 4 467 469 794 86.0 0 MSENMVGKIIQVMGPVVDIDFESYLPAINEALDIDFVVDNQSRKLVLEVAAHIGDNRVRA IAMDMTEGLTRGEKVVARGNPITVPVGEQVLGRIFNVTGDVIDGGEELNNPEKWSIHRAA PTFENQSTKTEMFETGIKVVDLLAPYSKGGKVGLFGGAGVGKTVVIMELIHNVAFKHSGY SVFAGVGERTREGNDLYHEMKESGVLDKVALCYGQMNEPPGARNRIAFTGLTMAEYFRDE KGLDVLMFIDNIFRYAQSGAEMSALLGRIPSAVGYQPTLASEMGKLQERITSTKKGSITS VQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEKGIYPAVDPLDSTSRILDPQVVGEE HYKIATSVQQVLQKYKDLQDIIAILGMDELSEEDKKVVERARKIEKFLSQPFFVAEVFTG SPGKYVTLQETLEGFRGILEGKYDHIPENAFYMVGSINEVLEKAEKMKAGA >gi|197283037|gb|ABQU01000013.1| GENE 85 72835 - 73227 473 130 aa, chain + ## HITS:1 COG:Cj0108 KEGG:ns NR:ns ## COG: Cj0108 COG0355 # Protein_GI_number: 15791496 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Campylobacter jejuni # 2 125 3 126 129 110 49.0 5e-25 METLKLDIVTPEGKIFSNDVKSVTLPGSEGEFGVLPGHIGIVTTLNSGVIEIEKKDGKRE IVAINWGYAKVDETSVDVLAEGAVDINGDSESEIAQAIANAKKLLEDSTDNKVAVSMVVS RIENSAKSIL >gi|197283037|gb|ABQU01000013.1| GENE 86 73224 - 73796 354 190 aa, chain + ## HITS:1 COG:jhp1058 KEGG:ns NR:ns ## COG: jhp1058 COG0811 # Protein_GI_number: 15612123 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Helicobacter pylori J99 # 2 187 4 189 189 168 50.0 5e-42 MNLLSFSGDYGITTIVVLVWLSLYFIFVVWVFLYRYIRLSVLTRGEKECLEDLLRGRNLL PRNSILNINLGKIDKKPTESMLQYSINKAIKDSTAGLTFLGIVASTAPFIGLFGTVVEIL EAFSKLGMDSKATLDVIAPVISKALIATAAGILTAIPAYSFNLVLKRKVFELNTYLQLQI NVLMSSKNEH >gi|197283037|gb|ABQU01000013.1| GENE 87 73786 - 74202 456 138 aa, chain + ## HITS:1 COG:HP1129 KEGG:ns NR:ns ## COG: HP1129 COG0848 # Protein_GI_number: 15645743 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport protein # Organism: Helicobacter pylori 26695 # 10 136 5 131 133 136 56.0 1e-32 MNIRDSMKVNFNWEENPELNITPLVDIMLVLLAILMVTAPVIVYQEEIALPQGSKTAKMQ EDSKIEIRVDIKRNIYLKDNVLDFKSFPDAFIAFVNGYDRNTQVYIRADKNLKYDDIIYI LKIAKQSGFSRVSLVTDG >gi|197283037|gb|ABQU01000013.1| GENE 88 74195 - 74953 589 252 aa, chain + ## HITS:1 COG:no KEGG:WS0520 NR:ns ## KEGG: WS0520 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 251 1 244 247 177 44.0 5e-43 MGNFFLGLFSGGVAVFSYLAILFLFLWNFYFLDEAPKQYTSYKETTFNIELFEEVKTIEK KEKNIQKTQKTQKKIENVLEHKQESASKTANVGVGINELFQQVEAKRNVPKEALKPQSQD DKIARRKKALQSIQKIEDNLKEDIEKIISNVEVKKTMSFAVPKGEYNEFYAKVQEILYEN WNPIKDQNENQAEVQIVIDYQGKFSYEILKLSGNLEFDKALKEFLDIMCNKEFPQYKGGN RTNIIVIFKTEV >gi|197283037|gb|ABQU01000013.1| GENE 89 74955 - 76235 1183 426 aa, chain + ## HITS:1 COG:jhp1055 KEGG:ns NR:ns ## COG: jhp1055 COG0823 # Protein_GI_number: 15612120 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Periplasmic component of the Tol biopolymer transport system # Organism: Helicobacter pylori J99 # 1 426 1 417 417 325 42.0 1e-88 MKKICVWVLLCVNCLFANQEIDATLEVVKKFGNLPNILVQYSGKDYNQREYTLRIFKMLV ADLKVTGHFTVQEDGNIANEMVLNFDEYRKAKIDLIARVSAEILQDGLVVNLQLYDANSG TLALSKEYKNSRAETYPFLAHKLAIDINDYIQAPNVDWMERIVVVSYYTKPGESEILLSD YTLTYKNSLIKGGLNIFPKWANEQQNAFYYTKYLDKPTLFKYDLTTGQNTQIISSEGMLV ASDVSKDSTKILLTMAPNEQADIFLYDIPSAKLTKLTNYRGIDVSGNFIEDEKRVMFISD RLGYPNVFAISVEGEANGSLEQMVFHGRNNNAANAFGEYIVYSSRETNEDFSRNTFNLYL VSTKSDFIRRLSANGINQLPRFSKDGETIMYVKHESNQSALGIIRLNYNKTLLFPLRGGI IQSMDW >gi|197283037|gb|ABQU01000013.1| GENE 90 76300 - 76818 621 172 aa, chain + ## HITS:1 COG:Cj0113 KEGG:ns NR:ns ## COG: Cj0113 COG2885 # Protein_GI_number: 15791501 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Campylobacter jejuni # 1 170 1 163 165 137 43.0 9e-33 MKKSLVLGSLAAALLMVGCSQKSGVDTSASQTQNMQNAQQGYVAGKDNFVNIEDRIQYVE NGLQNIFFNFDQFSIRPDMQNAVDNDANVLKDTAANPLTVRIEGNTDEWGTDEYNYALGL KRAVAVKDALVARGVSEGKMVLVSYGESKPTCMEKTRECWAENRKVTFKMLP >gi|197283037|gb|ABQU01000013.1| GENE 91 76831 - 77787 932 318 aa, chain + ## HITS:1 COG:no KEGG:WS0523 NR:ns ## KEGG: WS0523 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 31 317 28 319 319 189 44.0 1e-46 MKLQKPIIASALLISFLYGVEPSAFNAGGDAPLKTETQILNERLFNLSNKVKMLDESQEG LKSVFEGQIKRMQEFSSQLSQMADENNATISQMKEQVNTNFALQNENIEKLQASIVALGD LVQKVNAQTKVEIEALKKAILDDIESQTLTDETANKEVKKDTIKEDSVENNGSIPSANAN IATIESAENNQKESKQPEKSLAEFFAEGEKLLEEKKYKLADEYLQTAIKGYYKPARGNYL LGEIAFAQGRYEEAIYYYKTSATRYDKADYMPRLMLNSAKSFEKINDKENAKKFLESLIA LYPDSNEAKEAGNLLTKK >gi|197283037|gb|ABQU01000013.1| GENE 92 77798 - 78313 742 171 aa, chain + ## HITS:1 COG:HP1123 KEGG:ns NR:ns ## COG: HP1123 COG1047 # Protein_GI_number: 15645737 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 2 # Organism: Helicobacter pylori 26695 # 6 147 11 152 185 161 54.0 7e-40 MIDKNQVVSIEYEVKENGTDKVLDSNVGGKPLEFIMGSGQIIKGLEEAIAEMSVGDKKEV IVAPVNAYGEYISDYIQEVPRDQFVGIDLQEGMTLFGQGENGETVQVIVKDFNDEVVIVD YNHPLAGKELNFVVTILDAREATEKELACGLHHHEHHNGGGCCGGGGCGCH >gi|197283037|gb|ABQU01000013.1| GENE 93 78329 - 79465 893 378 aa, chain + ## HITS:1 COG:HP0926 KEGG:ns NR:ns ## COG: HP0926 COG0585 # Protein_GI_number: 15645542 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Helicobacter pylori 26695 # 5 377 10 380 381 302 45.0 9e-82 MNYSYAYTHSKIDFHFRQNTRDFVVEEIPLYAFSQEGAHLILKIRKKNLTTFELINILSS HFGIKANEIGYAGLKDKNALTIQYISIPKHLLKNVSLDTFSHTNIKILETTSHNNKIKIG HLKGNNFFIRIKKLDNLNSQKIQQVLKQIERFGIPNYFSYQRFGKNLDNYLLGKEIVEGK KRMRDRKMQNFLISAYQSHLFNQWLSLRIDISHLITKIKEREIHQALEMYFHTKEIPQAF LDMNYCEMLKMQPHFFKVFYGDYMCHYPFGKNFLVEEELLVDSRRFMEKDIAPTGLLSGI KSQISQKEAGFFESKFIDSRIKSVGQRRYAWIFPENLQFLYKQEEAQGELKFFLPKGAYA TNLLRELAHREIMQEEEE >gi|197283037|gb|ABQU01000013.1| GENE 94 79465 - 80388 915 307 aa, chain + ## HITS:1 COG:HP0927 KEGG:ns NR:ns ## COG: HP0927 COG0501 # Protein_GI_number: 15645543 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Helicobacter pylori 26695 # 2 304 20 321 326 337 57.0 2e-92 MFDKIIRENHFKTLCVIAIYIFIFIVIGLLVDIIRINATSLSFGFYELLTFREFPLVTLC MLGLACGIVLYCVGNFKQILLSGNEYKEIIYGQEISPQERELSRMLDELLQNAQLNFRPK LYLMEAPFMNAFASGWNADNSLIALTTTLVKNLSKDEVKAVMAHELSHIRHGDIRLTLVV GVLSNIMLLVVNYGVYMFLGNSREKGANTARSILLILQFVLPLLTIVLQMFLSRSREYMA DSGAAYLMGDSTPMIRALQKISGSYAQSDFSDIDTNPTRSALYIVGFKEIFSTHPSIENR IKALLGK >gi|197283037|gb|ABQU01000013.1| GENE 95 80398 - 80940 560 180 aa, chain + ## HITS:1 COG:jhp0863 KEGG:ns NR:ns ## COG: jhp0863 COG0302 # Protein_GI_number: 15611930 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Helicobacter pylori J99 # 1 180 1 180 180 232 58.0 3e-61 MEEKIRAFFDYIGEDRDREGLLETPMRVIKSWEHLYSGYKSDPKEILGKCFSDGACDEMV VLKDIEFYSVCEHHLLPFFGKISIGYIPDSKVVGISKLARLVEVFSRRLQIQEKMTSQIA DTIMEVLQPKGAMVVAEAKHMCMVMRGVEKQNSIMTTSAIRGLFKSDHRTREEFMGHIRS Prediction of potential genes in microbial genomes Time: Tue May 24 02:05:44 2011 Seq name: gi|197283036|gb|ABQU01000014.1| Helicobacter pullorum MIT 98-5489 cont2.14, whole genome shotgun sequence Length of sequence - 99254 bp Number of predicted genes - 94, with homology - 92 Number of transcription units - 36, operones - 23 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 762 583 ## COG4866 Uncharacterized conserved protein 2 1 Op 2 . - CDS 806 - 1057 311 ## gi|242310695|ref|ZP_04809850.1| predicted protein 3 1 Op 3 15/0.000 - CDS 1044 - 1424 462 ## COG1516 Flagellin-specific chaperone FliS 4 1 Op 4 9/0.000 - CDS 1439 - 3496 2791 ## COG1345 Flagellar capping protein 5 1 Op 5 2/0.100 - CDS 3511 - 3885 562 ## COG1334 Uncharacterized flagellar protein FlaG 6 1 Op 6 . - CDS 3961 - 5193 1420 ## COG0739 Membrane proteins related to metalloendopeptidases 7 1 Op 7 . - CDS 5195 - 6001 726 ## WS0147 hypothetical protein 8 1 Op 8 3/0.000 - CDS 5988 - 6656 633 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 9 1 Op 9 3/0.000 - CDS 6659 - 7888 789 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 10 1 Op 10 3/0.000 - CDS 7888 - 9144 1041 ## COG3401 Fibronectin type 3 domain-containing protein - Prom 9182 - 9241 8.8 11 1 Op 11 . - CDS 9271 - 10263 230 ## PROTEIN SUPPORTED gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family - Prom 10290 - 10349 6.8 + Prom 10254 - 10313 9.3 12 2 Tu 1 . + CDS 10339 - 11463 1078 ## COG0772 Bacterial cell division membrane protein + Term 11473 - 11539 30.0 + TRNA 11451 - 11527 93.1 # Met CAT 0 0 + Prom 11465 - 11524 72.0 13 3 Op 1 . + CDS 11562 - 11783 291 ## gi|242310706|ref|ZP_04809861.1| predicted protein 14 3 Op 2 . + CDS 11811 - 12644 927 ## COG1076 DnaJ-domain-containing proteins 1 15 3 Op 3 . + CDS 12634 - 14559 1549 ## WS1211 CiaB protein 16 3 Op 4 13/0.000 + CDS 14546 - 15373 636 ## COG1352 Methylase of chemotaxis methyl-accepting proteins 17 3 Op 5 . + CDS 15380 - 16030 786 ## COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain 18 3 Op 6 . + CDS 16033 - 16620 587 ## COG1739 Uncharacterized conserved protein 19 3 Op 7 . + CDS 16621 - 17355 528 ## gi|242310712|ref|ZP_04809867.1| predicted protein + Prom 17373 - 17432 12.5 20 4 Op 1 . + CDS 17456 - 17971 520 ## COG2862 Predicted membrane protein 21 4 Op 2 . + CDS 18000 - 18491 476 ## COG2834 Outer membrane lipoprotein-sorting protein + Term 18539 - 18589 6.0 + Prom 18509 - 18568 9.8 22 5 Op 1 . + CDS 18609 - 19892 1354 ## COG0372 Citrate synthase + Term 19904 - 19943 -0.3 + Prom 19894 - 19953 8.3 23 5 Op 2 . + CDS 19976 - 21328 1441 ## COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 24 5 Op 3 . + CDS 21341 - 21625 213 ## ROD_41921 lipopolysaccharide core biosynthesis protein + Term 21649 - 21683 -0.5 25 5 Op 4 . + CDS 21701 - 22042 219 ## SARI_03925 lipopolysaccharide core biosynthesis protein + Prom 22044 - 22103 4.2 26 6 Op 1 40/0.000 + CDS 22127 - 22798 810 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 22801 - 22837 2.9 27 6 Op 2 . + CDS 22857 - 24092 816 ## COG0642 Signal transduction histidine kinase 28 6 Op 3 . + CDS 24120 - 24845 749 ## WS0211 hypothetical protein + Term 24857 - 24885 -0.1 29 7 Op 1 2/0.100 - CDS 24842 - 25603 623 ## COG0796 Glutamate racemase 30 7 Op 2 . - CDS 25605 - 26918 1567 ## COG1158 Transcription termination factor - Prom 26947 - 27006 7.1 31 8 Op 1 . - CDS 27088 - 27693 521 ## COG1280 Putative threonine efflux protein 32 8 Op 2 . - CDS 27703 - 28614 1070 ## COG0540 Aspartate carbamoyltransferase, catalytic chain - Prom 28691 - 28750 7.0 + Prom 28650 - 28709 10.5 33 9 Op 1 . + CDS 28748 - 30079 1372 ## COG1004 Predicted UDP-glucose 6-dehydrogenase 34 9 Op 2 . + CDS 30073 - 30576 416 ## WS0584 hypothetical protein 35 9 Op 3 3/0.000 + CDS 30576 - 31295 497 ## COG1189 Predicted rRNA methylase 36 9 Op 4 1/0.100 + CDS 31261 - 32151 884 ## COG0196 FAD synthase 37 9 Op 5 17/0.000 + CDS 32144 - 32692 539 ## COG0500 SAM-dependent methyltransferases 38 9 Op 6 . + CDS 32652 - 32849 221 ## COG0500 SAM-dependent methyltransferases 39 10 Tu 1 . - CDS 33093 - 33296 176 ## RC1_3973 acetyltransferase, GNAT family - Prom 33332 - 33391 1.7 40 11 Op 1 . - CDS 33462 - 33680 173 ## gi|242310733|ref|ZP_04809888.1| GNAT family acetyltransferase 41 11 Op 2 . - CDS 33710 - 35134 1302 ## COG0519 GMP synthase, PP-ATPase domain/subunit 42 11 Op 3 . - CDS 35137 - 35211 107 ## 43 11 Op 4 . - CDS 35227 - 36525 802 ## COG0863 DNA modification methylase 44 11 Op 5 . - CDS 36522 - 37283 562 ## Bmur_0842 hypothetical protein 45 11 Op 6 . - CDS 37363 - 38907 1158 ## COG2818 3-methyladenine DNA glycosylase 46 11 Op 7 . - CDS 38910 - 39737 653 ## COG0518 GMP synthase - Glutamine amidotransferase domain - Prom 39757 - 39816 4.7 47 12 Op 1 1/0.100 - CDS 39819 - 41228 1212 ## COG0477 Permeases of the major facilitator superfamily 48 12 Op 2 . - CDS 41296 - 42723 357 ## COG1055 Na+/H+ antiporter NhaD and related arsenite permeases 49 13 Tu 1 . + CDS 43038 - 44210 1084 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Prom 44234 - 44293 8.2 50 14 Op 1 . + CDS 44313 - 46871 3101 ## COG0013 Alanyl-tRNA synthetase 51 14 Op 2 . + CDS 46883 - 47554 1058 ## WS0811 hypothetical protein + Prom 47713 - 47772 5.3 52 15 Op 1 . + CDS 47811 - 49601 1692 ## COG5016 Pyruvate/oxaloacetate carboxyltransferase 53 15 Op 2 . + CDS 49601 - 50851 1227 ## COG1570 Exonuclease VII, large subunit 54 16 Op 1 . - CDS 50848 - 52236 1150 ## COG1875 Predicted ATPase related to phosphate starvation-inducible protein PhoH 55 16 Op 2 . - CDS 52237 - 54603 2341 ## COG0209 Ribonucleotide reductase, alpha subunit 56 16 Op 3 . - CDS 54620 - 56419 2141 ## COG1217 Predicted membrane GTPase involved in stress response - Prom 56451 - 56510 13.5 + Prom 56430 - 56489 9.9 57 17 Op 1 . + CDS 56580 - 58622 1756 ## WS1761 hypothetical protein 58 17 Op 2 16/0.000 + CDS 58636 - 59775 1800 ## COG1843 Flagellar hook capping protein 59 17 Op 3 . + CDS 59787 - 62081 2714 ## COG1749 Flagellar hook protein FlgE + Term 62293 - 62340 2.1 60 18 Tu 1 . - CDS 62193 - 62960 491 ## Cj1433c hypothetical protein - Prom 63032 - 63091 6.2 61 19 Op 1 . - CDS 63105 - 63251 120 ## 62 19 Op 2 . - CDS 63326 - 64387 982 ## COG0582 Integrase - Prom 64416 - 64475 6.7 + Prom 64413 - 64472 6.2 63 20 Tu 1 . + CDS 64591 - 65289 459 ## COG5527 Protein involved in initiation of plasmid replication + Prom 65849 - 65908 12.9 64 21 Tu 1 . + CDS 65944 - 66366 330 ## gi|242310754|ref|ZP_04809909.1| predicted protein + Prom 67688 - 67747 8.3 65 22 Tu 1 . + CDS 67798 - 68262 524 ## COG3019 Predicted metal-binding protein 66 23 Op 1 . - CDS 68265 - 69170 688 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 67 23 Op 2 2/0.100 - CDS 69172 - 70002 835 ## COG0788 Formyltetrahydrofolate hydrolase 68 23 Op 3 . - CDS 70002 - 70877 995 ## COG0616 Periplasmic serine proteases (ClpP class) - Prom 70914 - 70973 6.8 + Prom 70902 - 70961 6.3 69 24 Op 1 . + CDS 70988 - 72790 2047 ## COG0481 Membrane GTPase LepA 70 24 Op 2 . + CDS 72832 - 73581 675 ## COG0501 Zn-dependent protease with chaperone function + Term 73618 - 73658 4.5 - Term 73600 - 73648 11.2 71 25 Op 1 4/0.000 - CDS 73688 - 74995 1079 ## COG2704 Anaerobic C4-dicarboxylate transporter 72 25 Op 2 . - CDS 75000 - 76412 1919 ## COG1027 Aspartate ammonia-lyase - Prom 76468 - 76527 8.5 - Term 76423 - 76465 -0.7 73 26 Op 1 1/0.100 - CDS 76531 - 77889 1404 ## COG0534 Na+-driven multidrug efflux pump 74 26 Op 2 . - CDS 77876 - 78577 581 ## COG1587 Uroporphyrinogen-III synthase - Prom 78722 - 78781 3.0 + Prom 78512 - 78571 10.2 75 27 Tu 1 . + CDS 78614 - 78940 248 ## HMU00530 thiosulfate sulfurtransferase GlpE - Term 78772 - 78816 1.2 76 28 Op 1 . - CDS 78937 - 79392 508 ## COG0394 Protein-tyrosine-phosphatase 77 28 Op 2 1/0.100 - CDS 79400 - 80425 1116 ## COG0136 Aspartate-semialdehyde dehydrogenase 78 28 Op 3 . - CDS 80438 - 81736 1215 ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 79 28 Op 4 . - CDS 81733 - 82143 259 ## WS0366 hypothetical protein 80 28 Op 5 . - CDS 82143 - 84632 3095 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 81 28 Op 6 . - CDS 84676 - 85416 536 ## gi|242310772|ref|ZP_04809927.1| predicted protein - Prom 85447 - 85506 5.6 + Prom 85411 - 85470 4.7 82 29 Tu 1 . + CDS 85499 - 85975 513 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family + Term 86006 - 86041 -1.0 - Term 85958 - 85994 5.0 83 30 Tu 1 . - CDS 86027 - 86197 94 ## gi|242310774|ref|ZP_04809929.1| predicted protein - Prom 86274 - 86333 4.5 - Term 86320 - 86364 9.8 84 31 Tu 1 . - CDS 86376 - 88925 2826 ## COG1049 Aconitase B - Prom 88992 - 89051 11.9 + Prom 88956 - 89015 9.3 85 32 Tu 1 . + CDS 89141 - 90064 768 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 - Term 89972 - 90015 1.2 86 33 Op 1 . - CDS 90066 - 91022 824 ## COG0523 Putative GTPases (G3E family) 87 33 Op 2 . - CDS 91015 - 91350 299 ## JJD26997_0673 hypothetical protein 88 33 Op 3 3/0.000 - CDS 91351 - 92232 984 ## COG0726 Predicted xylanase/chitin deacetylase 89 33 Op 4 . - CDS 92253 - 93068 700 ## COG0388 Predicted amidohydrolase - Prom 93116 - 93175 9.3 - Term 93222 - 93260 6.8 90 34 Tu 1 . - CDS 93292 - 94401 1368 ## HH1023 hypothetical protein - Prom 94426 - 94485 9.0 + Prom 94482 - 94541 8.8 91 35 Op 1 . + CDS 94561 - 95640 1059 ## gi|242310782|ref|ZP_04809937.1| predicted protein 92 35 Op 2 . + CDS 95651 - 97318 1866 ## CCC13826_0026 response regulator 93 36 Op 1 . - CDS 97319 - 98158 224 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains 94 36 Op 2 . - CDS 98155 - 98715 515 ## gi|242310785|ref|ZP_04809940.1| predicted protein Predicted protein(s) >gi|197283036|gb|ABQU01000014.1| GENE 1 3 - 762 583 253 aa, chain - ## HITS:1 COG:HP0292 KEGG:ns NR:ns ## COG: HP0292 COG4866 # Protein_GI_number: 15644920 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Helicobacter pylori 26695 # 3 253 2 243 290 176 45.0 3e-44 MQWKPIDIEDKEIINSFFSANHILVSDFTFTNLYLWHYSRHISYIILNECLVIKTQYPNQ NPFIFYPFHKNNNKEAKKQTILDIMEICKAKGMEFSIHSLSCVDKEELEAILPNTFEFTY REDRSDYIYSIPELIELKGKKYHKKKTHLNRFVERYDFKYESLCQDNLEELIITYQEWFG KISDTASEGLKNEYIGIIESLKKFPSLDFKGGIIRVEDKIIAFSFGEPLNDETIVIHIEK ADIEYQGAYQAIN >gi|197283036|gb|ABQU01000014.1| GENE 2 806 - 1057 311 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310695|ref|ZP_04809850.1| ## NR: gi|242310695|ref|ZP_04809850.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 83 1 83 83 116 100.0 4e-25 MNWLNELKVAYLNKNDAKITELMANTPILQTRDEMFEALAVLEQIGEYAKAQKEKLAQEM RKLKQTKKFLPKQERVQKLNLSF >gi|197283036|gb|ABQU01000014.1| GENE 3 1044 - 1424 462 126 aa, chain - ## HITS:1 COG:HP0753 KEGG:ns NR:ns ## COG: HP0753 COG1516 # Protein_GI_number: 15645372 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport; O Posttranslational modification, protein turnover, chaperones # Function: Flagellin-specific chaperone FliS # Organism: Helicobacter pylori 26695 # 1 126 1 126 126 175 73.0 1e-44 MKSNLAYNSYQQNSVAVESPAKLVEMLYEGILRFASMAKRCIDAEDIEKKIYYINRTTDI FVELLNSLDYEKGGQVAHYLTGLYTHQIKLLTQANMENSKEKIDIVIKVTKGLLEAWKEV NHNELA >gi|197283036|gb|ABQU01000014.1| GENE 4 1439 - 3496 2791 685 aa, chain - ## HITS:1 COG:jhp0689 KEGG:ns NR:ns ## COG: jhp0689 COG1345 # Protein_GI_number: 15611756 # Func_class: N Cell motility # Function: Flagellar capping protein # Organism: Helicobacter pylori J99 # 15 682 16 680 685 413 39.0 1e-115 MALGTQSVLGISSNLTWDVIEQMKDLDVSNQIDPITEKLEKNMEQQTELTSLLTMMTSLN TSFKNLSDYSTYQKRQATVEGSGIKATAGDGLAIQDITINVSQLAQNDVNQVGLKFASRD SIFSSDNTTLNFYYNGSNYSVDIKAGATLSEVAQSITDATNGEVMGIIMKTGGENPYQLM IQSKNTGANNKIYFGSTLESAATPGGKITSGTLNIEIGGEKISIDMSKIGSDFGNEAKDN ASLILDAINKEIENNANLKDKIDKGEITISLNSSGNGLMFNDASGGTIKVEANNVKLQAS QGASETNTDLGFVKTSVGGDETLTEMKIAAGALTGVFTINGEKFDLSQLTKQGNTAEENR KAILDEINKNTNLQQAGIKAEEGKNGAISLVGKSVTIGAEGADANAQKQVLDSIGMVAGS YTSSQGLLDKMDITNIQKAQDAKLTYNGIPIERDTNNIDDIVSGLSLELTSITETGKDVI VRIARDDEGIAEEMQAFVESYNEMYNKLQELTKYDAETEISGVFNGNSEIRSITRQLNAI INSTDANGTSLVKYGVYMNEDGTLTFEQDTFNTAFQEDPDAAVEFFRSSTTTSKGQTIET DGVFTKLRDTMDSLITGSNSTLKILETTLINEQKTLNEDKTSTQESIDTKYEIMAEKWSA YDQMIAQMQQSANTITQLINQAMNS >gi|197283036|gb|ABQU01000014.1| GENE 5 3511 - 3885 562 124 aa, chain - ## HITS:1 COG:jhp0688 KEGG:ns NR:ns ## COG: jhp0688 COG1334 # Protein_GI_number: 15611755 # Func_class: N Cell motility # Function: Uncharacterized flagellar protein FlaG # Organism: Helicobacter pylori J99 # 18 124 13 119 119 65 29.0 3e-11 MNITENGMNIAGNMQVNSYQQGESTYSNNVSSATMQQNIQESNEQKNIEEQKQELSQLAQ QLNKELSPLNTSIAFNFSEDIEGLYITVSERDTNRLIRKIPSDEAMQLAAKMKEIVGMIF DKQA >gi|197283036|gb|ABQU01000014.1| GENE 6 3961 - 5193 1420 410 aa, chain - ## HITS:1 COG:HP0750 KEGG:ns NR:ns ## COG: HP0750 COG0739 # Protein_GI_number: 15645369 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Helicobacter pylori 26695 # 21 407 22 398 400 220 37.0 4e-57 MPFKILVIFLCFISLNADQKEITQKISQNKTALESKKKKEAQINQKLQEIGNHINKQKEE LETLENIIQESEKNISKNKQEYTTKEKLIKTLSNEQETLYQKRKNIELAIIDLVAKDISF AILLNDFQPESIQDLITEESFKAINHSTKAQLTNLSQQQTQIIQDIQALQNEITQLEKFI SLEDKKRNNLKDLQAKQKEILATYQKEMDKYNKELQQIVKERDSLQEILVQLNILKSQEE EKRKKREELAKSQEKSQTPQTQNDFDVRQVASSYHNISTTKYKGSKTIAPLDDFEIQKRF GPYYDPVYKMKVFNESVTLLTKGDDKVKSVLDGKVVFAKDTPILKKVVIIEHKDNMHTIY AQLDKIAPTIKPGTTIKKGYTIGRIENTLKFEVTLKDKHIDPLELISLKN >gi|197283036|gb|ABQU01000014.1| GENE 7 5195 - 6001 726 268 aa, chain - ## HITS:1 COG:no KEGG:WS0147 NR:ns ## KEGG: WS0147 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: ABC transporters [PATH:wsu02010] # 1 267 1 267 268 256 52.0 5e-67 MNSLKNHLSLIIPLVALLFALESILLVNRTLNDYENTLGKNYAIILASTKELNLQDIKEK ISESQSLTSIDSKIVLDRLKDNISQANLIVLKNTLPHFYSLSLNTYPSSARLSVINNSLK SIDGIIRVETFTKSHSQIYQLLLIINSSVIIFSSLIALISLLLMFKQIEIWKFQHLERME IMTLLGAPLWMCSQILFRLACLDTIIATIIVGIGLFYVSTNPTLLIFMQELGLKPDIFSP LSDSIVLLLVGLIVSLVSVWIVSLQQKD >gi|197283036|gb|ABQU01000014.1| GENE 8 5988 - 6656 633 222 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 222 1 223 223 248 54 9e-65 MEAIIKAQGINLGYKDEIIIKNASFNIFPQEFVFISGPSGSGKSTLIRSIYGDLPLKSGS LEVCGVEMFKTSKKNIENLRRHLGIIFQDYKLIKDFNVEKNVMLPMIIGGFTKESCKAQT DRLLAHIKLSHKGNKYPLELSGGEQQRVAMARALSHNPLLILADEPTGNLDDYSSEVIWS LLKGVNEQLGITIVVVTHRIPETFGIKYRHLHIEEGVIYELS >gi|197283036|gb|ABQU01000014.1| GENE 9 6659 - 7888 789 409 aa, chain - ## HITS:1 COG:HP0747 KEGG:ns NR:ns ## COG: HP0747 COG0220 # Protein_GI_number: 15645366 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Helicobacter pylori 26695 # 1 404 1 390 393 233 38.0 4e-61 MPHFKTQSLTLPPLPFTSTTKEGEFTFTNLFTSANNPNFSLLQVHFSPTLSSLKNKDYFL EIKKTNHETIVKCDKNSKIAPIGIIKKSLEILSQFQDSLLTHNLHEKNNLYLGKIPFIKH IEDFLDFDTLLKKQKLKNPKVWLEIGFGSGRHLLYNAQKHPNILHIGLEIHYPSLEQVAR QIELNKLDNILLLAYDARIFLELLPSNTLEKIFVHFPVPWDKKPHRRIFSNAFLSQASRV LIPNGHLQLRTDSYEYFCYAKDLATSNSNLEIQYTSNAQEEIISKYEARWLKQQKNIYNL EIFAKQNSSPISFDYTFDFSSTSLQKFFQKKKIIQEDYFLHLEDLLIADSTDCKLLKIAF GDFNYPETRYLIEDTHLHYFRENPLPTQINHKAHQLLISLLNQKPTQGL >gi|197283036|gb|ABQU01000014.1| GENE 10 7888 - 9144 1041 418 aa, chain - ## HITS:1 COG:Cj1279c KEGG:ns NR:ns ## COG: Cj1279c COG3401 # Protein_GI_number: 15792603 # Func_class: R General function prediction only # Function: Fibronectin type 3 domain-containing protein # Organism: Campylobacter jejuni # 1 411 1 407 411 223 33.0 4e-58 MLFLFKNTFFKLLILVIAAFFSACSSSSSNFSFGSTPSINPNITPPSDIRVLSDVNTIAF EWNLIQNPEIAGYYIYRKKPNETSFSKIATLDSRFTTHYADNKLESNTEYLYQFASFDAQ KNISQFSSPISAKTQFITAVNYIEAIGNYPRKIKIIWNPHQDTRVIGYIIEKKDSKGNWD KLADINNRLLVEYLDTKLEDNATHEYRIFAYNVNKTLSLPSQIVSATTKPKPTPISNFTA SNNIPKQITLKWDLHQNPEVTQYNLFRSNFESNFFSKLATIPNNTNTYQDIIDDNGKQYY YKITATDKDGIESLETGPIIGTTLGLPNTPLITYAQIEGNSAVIRWNPQDNRAVEYIVYK KDSSFFGETLRYNKVLTPEFIDNEVRAGEKYYYRISAVDENGLESKQTEEIMLFLPAK >gi|197283036|gb|ABQU01000014.1| GENE 11 9271 - 10263 230 330 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family [Lactobacillus jensenii 269-3] # 77 295 76 283 287 93 33 5e-18 MEREILNFLVTSQESGMRLDIFLATKLNLSRNKINKMLHNKQITLNQIQASKNGIILKEQ DQIHIFPSLLETAKPTPKIHIPILYEDEDLLVLNKPINLVVHKTNQEDTQYTLHEWLKEQ NFKLSNLGDSYREGIIHRLDKTTSGAIVIAKNNHSHQILSQQLKTKEMGRYYLCVINQPL KQDIIIDSPLIRHPKNRLKYITTSKQTPDSKDAKTAFFKIIDNGKTELIGAKLFSGRTHQ IRAHLSKINRHILGDFFYNYEGNYTQRILLHSSLLYLKHPTTQKPLKIYAPLFEDMLLFL HQNFYASQDFESFAKNFILPLQDIYLSKFT >gi|197283036|gb|ABQU01000014.1| GENE 12 10339 - 11463 1078 374 aa, chain + ## HITS:1 COG:Cj1282 KEGG:ns NR:ns ## COG: Cj1282 COG0772 # Protein_GI_number: 15792605 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Campylobacter jejuni # 1 357 1 358 366 366 58.0 1e-101 MFGFNRNILSFFDFTLPLLVTPLILLSWFLINENNEFLGNKVLIYTFIGLLIFIVVFLIP IRRMTWAIIGFYWINIILLIMVDFFGDMRLGARRWLEIPFVHFTFQPSEAMKPALILMLA YLITKNPPKKNGYGLQEFLKLSFFILLPFVLILKQPDLGTALVLLIMGFGVLFLVGVNYK IWLVLLICVGSLSPVLYANLHDYQKKRIVDFVLKEPDYQVKQSIIAVGSGGISGKEKENA TQATYRFLPIATSDFIFPYFAERFGFVGVIGLFILYVALIFHIFSIGNVDSKDYFLKVVA YCVGLLIFVYSWVNIAMTIGFAPVVGIPLPLFSYGGSSFITFIILFAILEHLLAFKYKFV YNYASKNFLKKLAS >gi|197283036|gb|ABQU01000014.1| GENE 13 11562 - 11783 291 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310706|ref|ZP_04809861.1| ## NR: gi|242310706|ref|ZP_04809861.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 73 1 73 73 116 100.0 4e-25 MKIQCVNIKCQGCVNKIQESLGQKFPTLKVDIPSQSVEVDASEEELKEIKAKLQELGFLK SEGVIGKIKGFFQ >gi|197283036|gb|ABQU01000014.1| GENE 14 11811 - 12644 927 277 aa, chain + ## HITS:1 COG:Cj0954c KEGG:ns NR:ns ## COG: Cj0954c COG1076 # Protein_GI_number: 15792283 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-domain-containing proteins 1 # Organism: Campylobacter jejuni # 69 270 60 253 256 68 26.0 1e-11 MEILLLITIVIIAIAFINFKDYLSNPQKRQQFQTTIQDNQIQEEFQEYEDPYKNLSKESK IKKSQYGVMVGLLAKLAQSDGKICELEKELIENTIEDIAQSLTLQSAMNQKEEILEILHS IFQNTTESVEELSQAYADLTKGQYKSRLKLVEYLLALAYADKVLSENEREVILDVAAYLE IENDDFNKMYDAFVEFYSKEDIKQDYKEACKVLGVSEEADLKEIKTKYKALVREYHPDIL HHKGLEESIIKTSTAKLQEINAAYEIIEQYKKEMGEK >gi|197283036|gb|ABQU01000014.1| GENE 15 12634 - 14559 1549 641 aa, chain + ## HITS:1 COG:no KEGG:WS1211 NR:ns ## KEGG: WS1211 # Name: not_defined # Def: CiaB protein # Organism: W.succinogenes # Pathway: not_defined # 5 634 2 621 621 460 43.0 1e-128 MKNKKEIFRDIAEIYYFLENENQKVNSLYHEVEAQNIPAFLECVFQIIPKTPETTFAVID RIVSLKEGALVNVLEKLGIKEEEILKIRFLMFQVTRDFYMQKHEKVLEFICNKNLLTPFL RELLQSIHKIGLVFNSFFENWQRELILGINQELKQKYQNIEEILKALQESMEITENGEMS DRSYSVPVWQDNQYQAIAYAKFFQEDFKRFKKVFENVLMQLKGIEENCPEVEQKQYYLNY LEALKEALLQEDVSKLLESWRKVDKAWMQITTPLQIGHPLEYYEDHYRKAVAPEWDLRIA KIYQGLDLTNLNHKDELKINKESFLEFYREYTKQMPNSAYKNEIDICVQESLQKTQSYGG QPLLFYGAEINGLFSAQVVPNDESVSAKFGKKIFYFPDRVREILCSKPFMLLSSKTFPKE FLEFNREMLYFRKEDWYKVYEISTIGHEFGHILWVSLDTELKMNQSGQFKNIEEFKATMG GLAYYFVGQNHTLLKELIFNTITRAVGLIAWKKENEVLPYYCEGLIHLDIMFEVGVLRYN GSFEDIALQIDETKIPLLVEKYLQTYNKLIEFYLSKADASGFLFDYVKKDQEGYYQPIRE ELARFTFDYYEQYNKIGQIADSLKVEEWKKDYLKRKNIANN >gi|197283036|gb|ABQU01000014.1| GENE 16 14546 - 15373 636 275 aa, chain + ## HITS:1 COG:RSp1405 KEGG:ns NR:ns ## COG: RSp1405 COG1352 # Protein_GI_number: 17549624 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methylase of chemotaxis methyl-accepting proteins # Organism: Ralstonia solanacearum # 13 270 28 279 292 149 36.0 4e-36 MPIISETEINQARKMIYEMAGIHLPSNKDSTIKNRLEKLARDLKIENFNDFFIQLKAGRF KQDFINSFTTNKTDFFREGFHFLDMVNRILPHRLRENEPLKVYCSASSTGEEPYSIAATL LYAKDIYKANIPISLVATDIDTSVLEFAKQGKYVVDTFLNPLPTWLDIKDFFEIAPKSQR EIYMNAKQSLKNIITFKQHNLYAKNYPFGQREFDIIFCRNVLIYFKVEDQEKILNQLFSH LKVGGTLYLGHSESILGLAPKVERLGQNIFIKTKD >gi|197283036|gb|ABQU01000014.1| GENE 17 15380 - 16030 786 216 aa, chain + ## HITS:1 COG:YPO1679 KEGG:ns NR:ns ## COG: YPO1679 COG2201 # Protein_GI_number: 16121941 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain # Organism: Yersinia pestis # 12 214 146 348 349 198 48.0 7e-51 MQINHKYHPDLILKSNPYKSEGKKLIAIGASTGGVDAIAKILQVLPKNLPPIIITQHIPE GFSTSFANRLNRISSIEVFEVNEKMHLYNSCAYLAPGGKHLLLDKNCNDYYAKSVDGERI SRHKPSVDVMFRSVNNVVGKNALAIIMTGMGDDGSIGIKELYDNGAYTIAQDENSCVVFG MPKQAIARGAVCEIVGLDEIPNKIIQFSSGNLKRGH >gi|197283036|gb|ABQU01000014.1| GENE 18 16033 - 16620 587 195 aa, chain + ## HITS:1 COG:Cj0429c KEGG:ns NR:ns ## COG: Cj0429c COG1739 # Protein_GI_number: 15791796 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Campylobacter jejuni # 11 195 9 179 194 134 43.0 1e-31 MELFYPLAETQSAFEIKGSCFISMLIPIQNFENTLLLMRQEHTKAVHFVTASRFLNPQEQ IEESFSDDGEPKGTSGMPTLKVLRGYNLIDCALLTIRYFGGTLLGTGGLVRAYTQGAKEV ILKAKDEGKLKPYIPQSVQKVFVCFSCLNKIEYLAKKMEIVIFKREFLETGVELSVQGCK SALEHFMAKVEELNF >gi|197283036|gb|ABQU01000014.1| GENE 19 16621 - 17355 528 244 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310712|ref|ZP_04809867.1| ## NR: gi|242310712|ref|ZP_04809867.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 244 1 244 244 464 100.0 1e-129 MFNKIIIFLCFALMAFAKERETEASKYLKLNIQHNNPFNRFQKYGNILGVPLPVVENKIP KYYKKSPYLEQEEVVDLKSDDWELEPFGLSHKIFNVALKQISPIFSQQIDGVLENYIPKV NFNVNLDAYFSQDTQNLGGDINLTFPILEYRNSSVFFLGGFIRDSQTGEWSEKYGIEHQM QYKFLQNIIFRQSLIQNNDTLSERIWNYGLEYSPFKNFSTYIQRENRKIQKDSTKTGVRY RIVF >gi|197283036|gb|ABQU01000014.1| GENE 20 17456 - 17971 520 171 aa, chain + ## HITS:1 COG:Cj1022c KEGG:ns NR:ns ## COG: Cj1022c COG2862 # Protein_GI_number: 15792349 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 7 167 5 165 168 125 52.0 5e-29 MEFMRIIFEKMMWNARMFIILAVVLSLVGAILLFIVASVDIIKAAKDTALYYMHALPEGS DIHNILLNTIIMAIDLYLIAVVLLIFSFGLYELFICKIQIKDESSSKVLEIHTLDQLKDK LAKVIVMALIVAFFSKVLNMGMKSTQDMLFFAISILALAIGLYFLHKDSKH >gi|197283036|gb|ABQU01000014.1| GENE 21 18000 - 18491 476 163 aa, chain + ## HITS:1 COG:jhp0722 KEGG:ns NR:ns ## COG: jhp0722 COG2834 # Protein_GI_number: 15611789 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane lipoprotein-sorting protein # Organism: Helicobacter pylori J99 # 8 161 26 182 184 90 36.0 2e-18 MFLCVVDAKEIKILESMQAKFTQKIFSDEHTITYKGEIFALAPRSLLWKYQTPVSKEIYI EQDTMIIYEPQLEQAIFTHLQENLDILNLVHQAVKITQDHYVAEILNQKYHLYFAKGILQ RISFEDSMGNQVEIVFEDIQVNPKIDPKIFDFKPASNIDILYN >gi|197283036|gb|ABQU01000014.1| GENE 22 18609 - 19892 1354 427 aa, chain + ## HITS:1 COG:jhp0022 KEGG:ns NR:ns ## COG: jhp0022 COG0372 # Protein_GI_number: 15611093 # Func_class: C Energy production and conversion # Function: Citrate synthase # Organism: Helicobacter pylori J99 # 3 426 2 425 426 660 72.0 0 MGNITLINNETGEKFDFDLIECTRGPKAVDFSKLFERTNIFSYDPGYGSTAGCESTISYV DGKNGKLLYKGIPIEEIVKKYKFTDVAKLLITDEAPKDEKESKEFDLELRHRSFLHEGLI NIFSAFPDNAHPMANLSSAVAALSTFHFDHKEMDDEDDYQTMARRIIAKITTLVAFSYRN SIGAPFIYPDISRSYVENFLYMLRAYPGGRLKYTLEGHEEITPLEVEALDKIFILHADHG QNASTTTVRNVASTGVHPYAAISAGINALWGPAHGGANEKVLVQLEEIGDVKNVDKFIAR VKDKSDPFRLMGFGHRVYKSYDPRAKAIKALKDELNQKGIKMNARLSEIAEKLEEVALND DYFKERNLYPNVDFYSGIILTALKIPVPLFTPIFVIGRMPGWCAQVMEHIKNPHARITRP RQVYLGK >gi|197283036|gb|ABQU01000014.1| GENE 23 19976 - 21328 1441 450 aa, chain + ## HITS:1 COG:PA2843 KEGG:ns NR:ns ## COG: PA2843 COG3200 # Protein_GI_number: 15598039 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Pseudomonas aeruginosa # 3 447 2 445 448 625 62.0 1e-179 MTTQEWNTKSWRGKVALQQPIYNDIALLESVEKQLSKYPPLVFAGEAESLKKHLAKVSRG EAFLLQGGDCAESFSDFNAIRIRDLFKVILQMAVVLTYAGACPIVKVGRLAGQFAKPRSS DTETINGVTLPSYRGDIINDIEFTKEAREANPNRILQAYNQSAATLNLIRAFAQGGLADL NQVQKWNLDFVSGISSERYQEMADKITQALAFMGACGINSSNTPILHETEFFTSHEALLL NYEEALTRKDHLSGKWYDCSAHMLWIGERTRNLEGAHLEFLRGVENPLGVKIGPNATKED ILGICEILNPKNEAGRLNFIIRMGANTIKEKLPKLLESVKGEGREILWSIDPMHGNTIKA SSGYKTRTFDSILEEVKSFFEIHKSVGTYAGGVHLEMTGEDVTECIGGMQAITEENLGCN YNTQCDPRLNANQAIELSFLIADILKERKI >gi|197283036|gb|ABQU01000014.1| GENE 24 21341 - 21625 213 94 aa, chain + ## HITS:1 COG:no KEGG:ROD_41921 NR:ns ## KEGG: ROD_41921 # Name: rfaY, waaY # Def: lipopolysaccharide core biosynthesis protein # Organism: C.rodentium # Pathway: Lipopolysaccharide biosynthesis [PATH:cro00540]; Metabolic pathways [PATH:cro01100] # 1 94 2 93 232 67 43.0 1e-10 MLVEKINGFKVYLKKNGHEMLYRKILLDYFNHSLVVDAIFKDSQETKVFLIDGGGQKFIL KVFIPQKNKIERFLKSFFKGDYYLNLFCKTERVQ >gi|197283036|gb|ABQU01000014.1| GENE 25 21701 - 22042 219 113 aa, chain + ## HITS:1 COG:no KEGG:SARI_03925 NR:ns ## KEGG: SARI_03925 # Name: not_defined # Def: lipopolysaccharide core biosynthesis protein # Organism: S.enterica_arizonae # Pathway: Lipopolysaccharide biosynthesis [PATH:ses00540]; Metabolic pathways [PATH:ses01100] # 1 107 120 227 232 96 46.0 3e-19 MLFEYIEGESPGNLNLDSNLKERIKQEVLRLHKNNMVMGDIQASNFILAADKIRIIDCSG KRASLKRKAEDRINLQRRFGIQNCKKDYGYFVVIAKERVRKVIRKIKNFLAFF >gi|197283036|gb|ABQU01000014.1| GENE 26 22127 - 22798 810 223 aa, chain + ## HITS:1 COG:Cj0355c KEGG:ns NR:ns ## COG: Cj0355c COG0745 # Protein_GI_number: 15791723 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Campylobacter jejuni # 1 221 1 221 223 350 77.0 1e-96 MRILIIEDEISLNKTITEGLNEFNYQTDVAENLKDGEYFISIRNYDLVLVDWMLPDGSGL EIISQVKSKSPRTAVVVISARDDAESEVEALRTGADDFLAKPFDFNVLVARIEARLRFGG TNLIEIEDLIINPDEEKITYKGQEIELKGKPFEVLTHLARHRDQIVSKEQLLDAIWEEPE LVTPNVIEVAINQIRQKMDKPLDIATIETVRRRGYRFCYPKGV >gi|197283036|gb|ABQU01000014.1| GENE 27 22857 - 24092 816 411 aa, chain + ## HITS:1 COG:ECs0608 KEGG:ns NR:ns ## COG: ECs0608 COG0642 # Protein_GI_number: 15829862 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli O157:H7 # 93 395 166 472 482 114 24.0 5e-25 MVIFSVALYSYLYFTAYGNIKQELQKYSQHILANNITYTTNQSFYIRNTNILSNDTIKIV VLDEKITQEYYKKQTIKDDVYFSLFVPYKGNKTLNITKNITKEMWFLENLFEGIVLVNFF ALILIQLFALAFSNILYKPIHNLSQTLEKVKEYDLETLNNNALPLEFQPLVYSINNLLQR IKNYLSSQKQLFIGIAHELKTPLAVMKTKCEVTLIKERQKEVYTDALKENISSINEMNAI IKMLLDLGRQESAQFEKSSMVDINKILKKIADNFMILSKKENKSFFVEIGEEEVLLTIKP TLLTQIVQNFLQNAFKFTPKGKSILLKSSVEDGKLNIIVMDEGCGIDSELNDIYAPFRRA GNKSGAGLGLFLAKNAANALGGNISLQNRSDKQGTIAKFQLKISDNWNKNC >gi|197283036|gb|ABQU01000014.1| GENE 28 24120 - 24845 749 241 aa, chain + ## HITS:1 COG:no KEGG:WS0211 NR:ns ## KEGG: WS0211 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 4 182 10 189 248 219 59.0 5e-56 MRWIVFFLFATMAFALPKVEFKNSCVPLEKFNDTQKEVLLRSYLAGYQFGFGYTLAAIAW KESCAGEYKMNFQDPSAGIFHAYIPGVIKRYPKLKQNGFTQNMVGAMLVEDDKFAAQIAI SELKFWDKIHKGNWRNIVKSYNKGYSWQKNLQSNIQAEKYYADIAKKVKQLQEYFASNEL DEAALKIPQEKLQNIEYYANLETQKEKEPLLLPIYQIGTEFAAPLKKNKTILKEFELMED Y >gi|197283036|gb|ABQU01000014.1| GENE 29 24842 - 25603 623 253 aa, chain - ## HITS:1 COG:Cj1652c KEGG:ns NR:ns ## COG: Cj1652c COG0796 # Protein_GI_number: 15792957 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Campylobacter jejuni # 5 250 2 246 250 303 59.0 2e-82 MTPKKIGVFDSGVGGISVLKSLIDSDSFEEIIYYGDTARVPYGVRSKETIIQYSLEALEF FKQFNLDLLVVACNTISAYALDSMQKFANYPIVGVIEPGVLALTNNLDNKNANILILGTK ATINSNLYQNLLHTQGYTNINGLATSLFVPIVEEGIFEGEILESTMKYYFKDYKESPDAI ILGCTHFPLIAKAIANYYQNKPILIHSGNAIMEYLKQQYTFQSIKHKTKITFYASDSLDK LKNTANLWLNCQF >gi|197283036|gb|ABQU01000014.1| GENE 30 25605 - 26918 1567 437 aa, chain - ## HITS:1 COG:jhp0497 KEGG:ns NR:ns ## COG: jhp0497 COG1158 # Protein_GI_number: 15611564 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Helicobacter pylori J99 # 2 433 7 437 438 682 78.0 0 MSQNKKEKMRTHTPVEGYTIEDLRSKSINKLADIAKSLGIENPQEFLRQDLIFEILKTQV SQGGFILFTGILEITSEGYGFLRAIDENFSGSQNDAYVSSTQIRRFALRNGDIVTGQVRS PKDQERYYALLKVEAINYQSPDEMKNRPLFDNLTPLFPTEQIKLEYNGLKITGRMLDLFA PIGKGQRALIVAPPRTGKTELMKELAYGITKNHPEIELIVLLVDERPEEVTDMERSVKGE VYSSTFDMPANNHTRVAELVVEKAKRMVEMGKDVVILLDSITRLARAYNTATPSSGKVLS GGVDANALHKPKRFFGAARNIEQGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVLA RHIAERRIYPAMDILKSGTRKEELLLGHDKLQKVWVLRNAIHQMNNEIDALTFLYSQMQK SKDNEEFLNMMNDSAKE >gi|197283036|gb|ABQU01000014.1| GENE 31 27088 - 27693 521 201 aa, chain - ## HITS:1 COG:BS_yrhP KEGG:ns NR:ns ## COG: BS_yrhP COG1280 # Protein_GI_number: 16079764 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Bacillus subtilis # 15 185 16 204 210 67 28.0 2e-11 MELGMLFLLGFTTALIPGPDILFVLRNTLSFGFKQGFLGFLGIFSGWLVFLSLIYFGFSS FIQGDIIQASLSFIGGIYLIYISCELFRKKKNQINFTQKKQKNILLYFKGLFINLSNPKA ILFFAAIISPFMQDNLENSFLVLLSSLSLAFIFVIFLATFFRRFINNSLFDKIDKVCSII FLGFGAWLFYLGLKGFFTALI >gi|197283036|gb|ABQU01000014.1| GENE 32 27703 - 28614 1070 303 aa, chain - ## HITS:1 COG:Cj1098 KEGG:ns NR:ns ## COG: Cj1098 COG0540 # Protein_GI_number: 15792423 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Campylobacter jejuni # 3 292 2 293 295 371 64.0 1e-102 MPRHLIETQDFSKQEIERLLELAEQFLDGKPRNSLKNHTIITIFFENSTRTLSSFEVATK RLGGNVVRLDVSRSSTSKGETLFDTAANLNAMQPSAIIVRHKSAGVPNILSHYVSCSIVN GGDGAHAHPTQALLDLLTLKKHLGNLEGKKIAIVGDIKNSRVANSNMELLSRFGMEVILV GPPHFIPKTSLRHCLYLKEVLDEVDAIMSLRTQTERHNSPIYSSLKDYASDYCITKEMLQ ERNIILLHPGPVHRNIDISDEMLRDSRSKVLEQVTNGVAIRMAVLETLITQNIPKNYQNF PYF >gi|197283036|gb|ABQU01000014.1| GENE 33 28748 - 30079 1372 443 aa, chain + ## HITS:1 COG:XF1606 KEGG:ns NR:ns ## COG: XF1606 COG1004 # Protein_GI_number: 15838207 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted UDP-glucose 6-dehydrogenase # Organism: Xylella fastidiosa 9a5c # 1 442 1 446 450 536 57.0 1e-152 MNIAVIGTGYVGLVSGTCFAEMGNEVYCVDVIQSKIDALKNGQIPIYEPGLEELVSKNYK SGNLHFTTSLEEALKKSEVAFIAVGTPMGEDGSADLQYVLVVAREIGAKMQNPLIVVDKS TVPVGTAQKVKEVILQELQKRNKEIQFSVASNPEFLKEGDAVNDFLKPDRVVIGAEDEWS KDKLKELYSPFSRNHDRLIIMDIKSAEMTKYAANAMLATKISFMNEIANICEAVGANVND VRVGIGSDKRIGYSFIYPGCGYGGSCFPKDVKALSKIAYDAGVNPKIINAVEQVNLEQKK ILGKKIVQHFGEDLSDKSFGIWGLSFKPETDDMREATSLVLINELIARGAIIKVYDPKAM EEAKRFYFKETPNIIYCKSKYEALEDCDALVLVTEWKEFRSPDFLEIKERLKNPVIFDGR NQYNAKKLQEIGFVYYEIGVGKC >gi|197283036|gb|ABQU01000014.1| GENE 34 30073 - 30576 416 167 aa, chain + ## HITS:1 COG:no KEGG:WS0584 NR:ns ## KEGG: WS0584 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 165 1 169 171 127 39.0 2e-28 MLKQILLFCIVFMILGCQKMSSGLAPLKTDESYLQATRKTELIVQGNTQIVVIATHLNEF DWIKFPREEGEIFFLDVYQTRKNGKGFLKNGYEIRLANGTKPSKITRLKKEDLEGMIAQN ATQWGEYYWVEFPKQDKRTQDRMILVLSHKDFGENTLEFGFKKIKKY >gi|197283036|gb|ABQU01000014.1| GENE 35 30576 - 31295 497 239 aa, chain + ## HITS:1 COG:HP1086 KEGG:ns NR:ns ## COG: HP1086 COG1189 # Protein_GI_number: 15645700 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Helicobacter pylori 26695 # 1 239 1 235 235 175 43.0 7e-44 MRLDLFCVAQGLFDSRNKAQESIQKGFVYVDEKQILKPAYEVSLDCTIALKERQIFVSRA GEKLWNFLEKNPIDIQNAKALDIGSSTGGFTQVLLQKGARDIYCVDVGTNQLHKSLRENP KIHLFEKTDIRDFISKVSKIEFDIIVCDVSFIKIEQIFYAFNPLIKKWLILLFKPQYEVG REAKRNKKGVVLDEKKIQASLQELLEFLENQGLKVLIQEESSIRGKEGNAEFFIACQRS >gi|197283036|gb|ABQU01000014.1| GENE 36 31261 - 32151 884 296 aa, chain + ## HITS:1 COG:HP1087 KEGG:ns NR:ns ## COG: HP1087 COG0196 # Protein_GI_number: 15645701 # Func_class: H Coenzyme transport and metabolism # Function: FAD synthase # Organism: Helicobacter pylori 26695 # 1 286 1 280 280 198 41.0 1e-50 MQSFLSLVKEAKKANSFTSIALGKFDGMHIAHQEIFKALDSNGMVLCIESNRGELLPKPY RDFYCEFPIYHLALDIIKEKSGEDFVRFICGILPNLKRIVVGYDFRFGKDRNCYTFDLQK YFQGEVVVIEEVFCKKLSVHSGLIKELLINGNLKEANKLLGRNFEIHGSIIKGQGIGKRE LYATINIENDGFILPQEGVYAGYIQLGKQSHITPKYPAVIFVGNRLSTDKAFAIEGHLLG MEIKVKDKEAGFYFYRKIRENYYFDNLETLKMQIKQDIQKAYKILKIEIPKEVENG >gi|197283036|gb|ABQU01000014.1| GENE 37 32144 - 32692 539 182 aa, chain + ## HITS:1 COG:Cj0590 KEGG:ns NR:ns ## COG: Cj0590 COG0500 # Protein_GI_number: 15791950 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Campylobacter jejuni # 2 179 4 180 236 142 43.0 4e-34 MDKIFMESPQKQFEFDEKVAGVFDDMVNRSIPHYKEVLGLIADFALKFTKEDSNILDLGT STGSMLIEIASKASFKVNLFGIDNSSFMLKSAKNKLEAYGMEAKLICGDVLEESFMQCDC IIANYTLQFIRPLQREKLAKKIFDSLNPEGVFIFSEKVICENKKLDFEMIDYYLQSKKKA RL >gi|197283036|gb|ABQU01000014.1| GENE 38 32652 - 32849 221 65 aa, chain + ## HITS:1 COG:Cj0590 KEGG:ns NR:ns ## COG: Cj0590 COG0500 # Protein_GI_number: 15791950 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Campylobacter jejuni # 8 65 178 235 236 80 67.0 8e-16 MIIICKAKKKQGYSEFEITKKREALENVLIPYSEQENKKMLKDCGFSHIETLFRWVNFAT FIAMK >gi|197283036|gb|ABQU01000014.1| GENE 39 33093 - 33296 176 67 aa, chain - ## HITS:1 COG:no KEGG:RC1_3973 NR:ns ## KEGG: RC1_3973 # Name: not_defined # Def: acetyltransferase, GNAT family # Organism: R.centenum # Pathway: not_defined # 1 67 113 179 189 106 65.0 2e-22 MNARRIYAHVEDYNISSQRLCEKLGMRQEGLFKEFISFINNPDGTPLYENTMQFSILKKE WNKQSQI >gi|197283036|gb|ABQU01000014.1| GENE 40 33462 - 33680 173 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310733|ref|ZP_04809888.1| ## NR: gi|242310733|ref|ZP_04809888.1| GNAT family acetyltransferase [Helicobacter pullorum MIT 98-5489] # 1 72 1 72 72 116 100.0 5e-25 MIEVIFIESRIKMGKIEFYTERLIIRQLCENDLEAYFKLLNNPKAHCFKQDKIENLEEAR NEIFIKKTRMMV >gi|197283036|gb|ABQU01000014.1| GENE 41 33710 - 35134 1302 474 aa, chain - ## HITS:1 COG:jhp0972_2 KEGG:ns NR:ns ## COG: jhp0972_2 COG0519 # Protein_GI_number: 15612037 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Helicobacter pylori J99 # 168 474 15 320 320 482 75.0 1e-136 MQEATIRFVKNTCWKCGFEYFVCYVLPQGNTLNHTEIFNPHILNKLKEWQSNNLHITLGT IKERYSSSTQTSYMSFGCPKCDAIFGNWYFNELIIDTMYEKQGDIADLVLRDYINDSQMA RFCRDSKSWDFSGRSILDEKSGFFETRQGSLLDINDRSRVEEIHDFSLKDKPSGAKVLCA VSGGVDSSVVATLLYRAIGENLIPIFVDTGLLRKGEREAVEKMFRDNLKVPLITVDASEE FLGLLKGVRDPETKRKIIGETFIKVFEREAKKHNTNGEIKFLAQGTLYPDVIESVSVKGP SKTIKSHHNVGGLPEWMKFELIEPLRELFKDEVRALGRELGMPESMLMRHPFPGPGLAIR IMGEVTKEDLDLLREADSIFIEELHKWGLYDKVWQAFCVLLNVRSVGVMGDNRTYDNTIC VRAVEALDGMTATFSHLPHEFLESVSNRIINEVEGINRVVYDITSKPPGTIEWE >gi|197283036|gb|ABQU01000014.1| GENE 42 35137 - 35211 107 24 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQSLRGKIKRKEVKRYNTESYFKD >gi|197283036|gb|ABQU01000014.1| GENE 43 35227 - 36525 802 432 aa, chain - ## HITS:1 COG:TVN1416_1 KEGG:ns NR:ns ## COG: TVN1416_1 COG0863 # Protein_GI_number: 13542247 # Func_class: L Replication, recombination and repair # Function: DNA modification methylase # Organism: Thermoplasma volcanium # 56 336 1 289 289 168 37.0 2e-41 MTLTQSTLNTSHTIHDKTIDNAKTIANTQSNTTKYDFLGQSYASMYPNLHKYPATMLPQI GLELLRDFKVKKTNLLDPYCGSGSSFISGIEYGMTHFVGFDLNPLAIRIAKAKLIFIESK YLLEEKERLLGQIYKKHTMPLDSNPLENITNLDFWIGKEAQESLVHIFSCIQQYSDENVQ NLFILAFSETLREVSYTRNNEFKLFRMKEHETYKPDTYKVFIKNMESLIKNYLDFYQPKL HSLSFKLINSSFTNTQQKFDCILTSPPYGDSKTTVAYGQFSTFINEWLGFREARKLDSKL MGGKKARSLYQKGIMRECITKISKQNSKRALEISSFYFDLEKSIQNVADSINIGGKVFYV VGNRRVKNIELPTDKFITEAFCKNGFTHLETIKRKISNKSMPLRNSPTNKTGILSNTMNE EYIVVCEKIDLK >gi|197283036|gb|ABQU01000014.1| GENE 44 36522 - 37283 562 253 aa, chain - ## HITS:1 COG:no KEGG:Bmur_0842 NR:ns ## KEGG: Bmur_0842 # Name: not_defined # Def: hypothetical protein # Organism: B.murdochii # Pathway: not_defined # 5 253 1 248 248 254 57.0 2e-66 MNNGILNKTETKTLQEIESKYYMQPILDSILQDIESNNREWQKVFDNLYSYLVNSKDLVE NLIQVRVQNGVIKDASQARKSIAGQAFSNLIIWTFLKNKEQGHIEKNIFITSKRSQIPNH KELFLIQVGEETQKPDVDLVIYSLDSTNHLHKCLIVSLKTSLRERAGQTYKWKLLMEIAN TESNLKEKYNISYNPPITPLVCFATVNFYNEINNPQHRGMFKFFDCAFIGKDIETDDFIK PLSYLITYIKENL >gi|197283036|gb|ABQU01000014.1| GENE 45 37363 - 38907 1158 514 aa, chain - ## HITS:1 COG:STM3642 KEGG:ns NR:ns ## COG: STM3642 COG2818 # Protein_GI_number: 16766928 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase # Organism: Salmonella typhimurium LT2 # 90 280 1 182 193 206 49.0 1e-52 MRDSKNTESADSKNSQVARICGDCESGNPSGRSILDEKSGFFRSASLHITVSKNKARRGN LLDINDQSQAKAIHDLSLKDKPFTQKPTPMQRCDWIYQGYKTSDKPTQKLYQDYHDFEWG IPQHDEKRLFEQLVLEGMQAGLSWITILKKREALRAAFDDFDPIKVAGYDEAKIEELMTN AKIIRNRAKIESAINNAKRFLEVQEEFGSFDRFIWSYVGGEPIVNAFKNLAQIPTRTPLS DKIAKDLKKRGFSFVGSVGMYAYMQSIGLVCDHLVSCAFHRENTQRNTSKKDEQITQNSA KTPYILETNRLKLREYTLEDLPTLHTILSDKETMYAWGHGFSIDESKEWLEKQLRGYKEN GFGIWAIIDKASGTIIGNAELDRASINLTNQKSIVKQEVVEIGYILAKKFWGQGLGTEAA RAVQEYAFKVLGLERVYCLIKEDNFASMRVTRKLGGRIIGEIIKHYKGKDLVHHIFECKG AKLVFESENTESSYVINKPTNKGFVYRESLGNKE >gi|197283036|gb|ABQU01000014.1| GENE 46 38910 - 39737 653 275 aa, chain - ## HITS:1 COG:HP0409_1 KEGG:ns NR:ns ## COG: HP0409_1 COG0518 # Protein_GI_number: 15645037 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase - Glutamine amidotransferase domain # Organism: Helicobacter pylori 26695 # 6 242 2 184 188 230 51.0 3e-60 MNQVQILVLDFGSQYTQLIARRLREFGVYTEIVPYFETIQSIRAKNPKGIILSGGPASVY EEGAYMPDSEIFNLGIPVLGICYGMQYIAHHFGGKVVRAKEQEFGKARLEIIRGELDSKN TESQSDSQAAVSCDDFKGFAKRANEAHLACAAVSKKQQSLKSAQETTPLFIGVKQDSIVW MSHADKVEEIPQGFSELAKSGNTHYCAIADCNRQIYALQFHPEVVHSECGGEILKNFAVK ICHASTDWNMKNFIAYEIEKIRKITGLESTNSQEG >gi|197283036|gb|ABQU01000014.1| GENE 47 39819 - 41228 1212 469 aa, chain - ## HITS:1 COG:MT2531 KEGG:ns NR:ns ## COG: MT2531 COG0477 # Protein_GI_number: 15841980 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Mycobacterium tuberculosis CDC1551 # 6 461 15 399 418 150 27.0 7e-36 MNPYNALAWLNFFIADVRDGLGPYLGVFLKEHHFLEGQIGLISTITSLCALAFGIPLGIL VDKTCYKRTLIAFCIIAITLSTLTNYFYPYFVFTLLAQLSIALCAVFLAPAFAALTLGIV GQKSYAKQVSLNEAYKHGGTAFSAFLSFGCALYWGIASIFVITVLMGIFSLLCLALLRNT PINHTIARGDSTHDIVDSMHNPIESTPHSLIQPTLSRPTKSTLQKYIDSDLTNTNPTKQI ISPNTTKSILQKPILHALSFKEVFTHTHIIALSLAMFCFHLSNASMLPLLSQRAHTLGID TSGAYAAATIIIAQSTMILVALICGKILNPSTFKNNAGHTQDSITLKVSFMLMAISLFEL CVRGLVAANFENITGMIITQILDGIGAGITGVIVPILVAIILRGSGHINAGLAFVMTCGG IGGALSGSFGGFIAQSFGYFYAYMCLGSVAFIGLVVWIISIKIFRTQCA >gi|197283036|gb|ABQU01000014.1| GENE 48 41296 - 42723 357 475 aa, chain - ## HITS:1 COG:SA1592 KEGG:ns NR:ns ## COG: SA1592 COG1055 # Protein_GI_number: 15927348 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter NhaD and related arsenite permeases # Organism: Staphylococcus aureus N315 # 1 474 5 430 430 179 30.0 1e-44 MAYFIFIVTMLCIYVRPFGLPLWIFSTLGAACAYIFGAVNLDNILLAWEITKPSTLALIG LILLSLSFEKLGFFTHLASLITPRTHPISTWKFFVFLVMLGSVVSVVFANDGAILVLTPL VLALFGKNLITHNLTSTQTPAPHNAQIHTPKQNLTQPPLDSPTHLHSPLSPMPKFSLSPL IVYLLLVSFVSDFASNALVISNLTNIITAQMFSMDFTYFALMMVLPQAFGLLAFVGITWL CFRKFLPRTLHFSPQSTTTHNPKPPSKTTLALCYTLIIFLLMSIVIGQKFGVPLYVFLFF TSAIALCYGVTFSLINISTLLKETPISVIIFSFGLFVVVFGVKNAGFIESMRAIFGSIES EPLFVQIFSIGLFSSLGSSIANNLPMVLLGNLTLQSFELDSLHQTTLALAHLLGCNIGSK LTPIGSLATLLFLLKLKISGVQISLLTYLSFACIITLCVLCAALFGLWVSVTLFA >gi|197283036|gb|ABQU01000014.1| GENE 49 43038 - 44210 1084 390 aa, chain + ## HITS:1 COG:Cj1048c KEGG:ns NR:ns ## COG: Cj1048c COG0624 # Protein_GI_number: 15792375 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Campylobacter jejuni # 12 386 1 365 365 419 57.0 1e-117 MCALSFIYGENMQSIEILKKLISYPTITPKECGIYDYIQELLPNFKVLEFEKEGIKNLFL YKEFGDKDLAKTHLCFAGHIDVVPPGEGWESDPFTPTQKGEYLYGRGTQDMKGGVAAFLC AVMEFEKQSNSQNAFNGILSILLTSDEEGEAIYGTKYVLEELDKIDLLPEFAIVAEPTSA ERFGDMIKIGRRGSINGKLTIFGKQGHVAYPSKCINPVELIAPLLSKIAGFNIDNGNEDF EPSKIVITDIRGGMGVVNVTPNDLRIMFNIRNSTQTSLEDLQSYLESILKEIPHSLELRQ SSKPFLTNTQNFIVQKLVESLQKNTGFTSILSTSGGTSDARYFAEYGVNVVECGVCNDSI HSINEKVKISEVESLSQVFLYLLQNFALKN >gi|197283036|gb|ABQU01000014.1| GENE 50 44313 - 46871 3101 852 aa, chain + ## HITS:1 COG:Cj0506 KEGG:ns NR:ns ## COG: Cj0506 COG0013 # Protein_GI_number: 15791868 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Campylobacter jejuni # 4 852 2 842 842 1046 63.0 0 MKKDVRALFLEFFESKGHKVYESMPLVPDDPSLLFTNAGMVQFKDIFTGKIPIPNPNIAT SAQLCIRAGGKHNDLENVGYTSRHHTLFEMLGNFSFGAYFKKDAIAYAWEFVTEVLGFSK EALYVTVHENDDEAFELWTKHIDPSRIKRMGDKDNFWQMGDTGPCGPCSEIFVDQGEENF NGPEDYFGGDGDRFLEIWNLVFMQYERDISGNLKPLPKPSIDTGMGLERVMALLEGKKSN FDSSLFMPLIAKVEQIVGQKYIYESGASFRVIADHARAVAFLLAQGVNFDKEGRGYVLRR ILRRAIRHGYLLGMRKPFVYEVIDSVCENMGNHYRYLREKQEAIKMQCKAEEERFFETIE NGMNLFNKELENLKKEKPNQLFSGEVAFRLYDTYGFPLDLTQDMLRENGFGVDMDSFEVC MQKQKEQAKANWKGSGDNIKEGDFKTLISKFGENEFVGYTTMQFKSKISALLDENFKEVA KLQGEGYVMLDKTPFYPQSGGPIGDKGVILDSNSKVLAEVMDTRKYFGLNISQIKALESL VVGQEVVAQVSQERLEIAKHHSATHLLHKALREVLGEHIAQAGSLVESNRLRFDFSHPKA LSYEEIEKIEILVNEKICLSNPQICETMDIDSAKAKGAMALFGEKYGKNVRVITFGDSIE LCGGIHVENTANIGSFYIIKESGVSSGVRRIEAVCGKAAYEYGKKALVEIAKAKEELKAQ DLLEGIKKQKEQIKSLKSQSTTKATTQNLQIEDINGVCVIIQSVDDAEMKTLVDNAKNKY EKVAILLIDTQGKIVAGVKNATIKAGSWVKEVAQVMGGNGGGRDDFATAGGKDTQKIKEA LQRAREIVLESI >gi|197283036|gb|ABQU01000014.1| GENE 51 46883 - 47554 1058 223 aa, chain + ## HITS:1 COG:no KEGG:WS0811 NR:ns ## KEGG: WS0811 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 46 194 27 175 176 118 51.0 2e-25 MQIKNTSFYQFANSDFWNTKTQSNQNAKELSSTQESQEDSTKETTEEKRNTQMVNGKELE PDEVQYVRELERIDRNVKAHEAAHIAAGGGVVSGGASYGYTRGPDGKMYAVSGEVPISMK KGKTPEETIQNARQIVAAAMAPADPSPQDYKVAASAMQMESQARVEQSQEKIQENEENLQ EEEQKRQEQEQEKPFFEDSKRQYALQIYTQNQTSYQPKIEIAG >gi|197283036|gb|ABQU01000014.1| GENE 52 47811 - 49601 1692 596 aa, chain + ## HITS:1 COG:PA5435_1 KEGG:ns NR:ns ## COG: PA5435_1 COG5016 # Protein_GI_number: 15600628 # Func_class: C Energy production and conversion # Function: Pyruvate/oxaloacetate carboxyltransferase # Organism: Pseudomonas aeruginosa # 4 450 12 457 476 514 56.0 1e-145 MIKITENSLRDGHQSLLATRMRTEDMIEAARIFEQIGFYSVEVWGGATYDTCLRYLKEDP FERLAIFKEIFKKTPIQMLLRGQNLIGYRHYADDIVREFIKLSAQNGVDIFRIFDALNDI RNLEVSIEEVKKHNKHAQGAICYTTSPVHTIKSFVEYGKELAKRGCDSLAIKDMAGLITP NAAYELTKALKAEIGLPLALHTHSTAGFAFGSHLKAIEAGIDIIDLANSALAEGTSHPCT QSMVATLKDTQWDSKLDLSLMEKAAEILKRNRKKYKKFESSYNQIDTRVLVNQIPGGMIS NMANQLREQNALDKMDEVLAEIPNVRKDFGYPPLVTPSSQIVGTQAVLNILTQTRYKTLT TESKNLIKGYYGKTPAPIAKELIQKIQAEGEEIITERPADKLQPELQKAIEESRDFAKSP TDIISYAIFGSIAKTFLIERNENRLTPEALTTFEDDHRPMPKDFMINLHGESYHIKVEGS GAKDEEIRPFFVRINGDLREVFVVSNEDNTKKESIKNGDSLPQASLPGHIISPMPGNLTK LKVKVGDNIKEGDVVAIVEAMKMENQVLATKGGEVKEIYAREGQQISANLAIMLVE >gi|197283036|gb|ABQU01000014.1| GENE 53 49601 - 50851 1227 416 aa, chain + ## HITS:1 COG:jhp0243 KEGG:ns NR:ns ## COG: jhp0243 COG1570 # Protein_GI_number: 15611313 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Helicobacter pylori J99 # 1 394 1 405 420 310 45.0 2e-84 MQTLSVSELNLQIKSLLEATFLQVSVCGEVSNCTYHSSGHIYFSIKDKDSALKCVMFRGN ARNLKFKIEDGMDLTLNGGITLYTPRGEYQLNCLSAIPSGIGELTLAFEQLKKDYEAKGY FNNKKSIPRFPYKIALITSKSGAVLQDMLRIAKRRWNLIEFTLMDTLVQGEGAKENIARN IQYADSLGFDCIVIARGGGSLEDLWAFNEPLVIEAIYQAKTPIISAIGHEPDFVLSDFVA DLRAPTPSAAMEMLLPDKLEWLMNLDLLQKNLDNKIQMILYQKYKKLEHLEILLQKNSFF AKLENYKQQLSLCYKLLTQNFSSKWIKYNYLLESLPSLLEQKMLKILHKKLNELSLLKAK LEVKNPQNNQKKGYVYASFQNKPIKTLDEIPLDSVLILEDLTTKLKVITKEKITRT >gi|197283036|gb|ABQU01000014.1| GENE 54 50848 - 52236 1150 462 aa, chain - ## HITS:1 COG:BH2629 KEGG:ns NR:ns ## COG: BH2629 COG1875 # Protein_GI_number: 15615192 # Func_class: T Signal transduction mechanisms # Function: Predicted ATPase related to phosphate starvation-inducible protein PhoH # Organism: Bacillus halodurans # 1 462 1 442 442 132 26.0 2e-30 MNKAYLIDTSIILDDVENLYFLHQNGENHIFICDVTLSELDKKKDLNNQTGFFAREFFRN ILSDESNLSEFPPKNSDKIHQIYFLCHNIKIPLQIIHRPKYQTHSLDYGLNDARILEVAK DYNLILLTNDISLKVYAISNSLISQSLMRDKIDNPQDINFLHHFKAHKNHIKDSIEANND FITLKNWSLLEITEQDNTENSLYETGKRHYGIKLNNEFVELNFDLIAEDKLYINPINLEQ KFLYSILTHPKNKITICSGATGSGKTLIALQAGLHLLKKGEVNGIVYMRNTITANDKEAE LGFRKGDESQKLNYFMYPLFSAINFMITKMQKESLTKRIEYRGEANSIFNKEATEYFIQK HNIEVMDIAHLRGTSIAKKFVIFDEAQNASNATIKLVGTRMGEDSKIVFLGDPAQIDHPY LSKYRNGLVTLLNKAKNEDFLAGITLKQTIRSEIAAWFEDNL >gi|197283036|gb|ABQU01000014.1| GENE 55 52237 - 54603 2341 788 aa, chain - ## HITS:1 COG:HP0680 KEGG:ns NR:ns ## COG: HP0680 COG0209 # Protein_GI_number: 15645304 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Helicobacter pylori 26695 # 1 788 1 788 788 1199 72.0 0 MLTVIKRDGRIEPLDVTKIQKYTHDSVVGLEGVSQSELEVDAKLHFRDRITTQEIQQTLI KTAVDKIDIDCPNWTFVAARLFLYDLYHKVNGFNGYKTLKEYLEIGEKENRIIKGMKEKF NLEKLNLKIDPKRDLQFTYLGIKTLYDRYLLKDKKGNPIELPQHMFMGIAMFLAQNEDDP TYWAEQFYDLLSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIEGIFDSYKEMALLSK YGGGIGWDFSKIRGLGSFIDGHKNAAGGVVPFLKITNDIAIAVDQLGTRKGAIAVYLEPW HSDIFDFVDIKKNSGEERRRTHDLFPALWIPDLFMKRVAEDGLWNLFDALTCADLTNLYG EAFEKRYKEYEADESIPKETIKAKDLWKRILTNYFEVGSPFLCFKDNANRANPNYHSGII RSSNLCTEIFQNTEPNKCFIRVEFEDGTIQDYEEYQEVLTDCGILKSSNKITSTDSINGK KVFISQRESVDGKTAVCNLASINLSKINTKEDIERVVPIAIRMLDNVIDLNFYPNRKVKV TNLDTRAIGLGVMGEAQMLAENKIEWGSQKHLEKIDEIMEMISYNAINASCKLAQEKGVY NDFAGSLWSQGIFPIDKANNEAKALVDRGGLFGFIYDWDSLREEVKTKGIRNGYLMAIAP TSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNLSLENWNYYTSAYEIDQTLIIKA AAIRQKWIDQGQSTNIFISLDKASGKYLNDIYSLAWRLGLKSTYYLRSQSVEAENSTMDR SIECEGCQ >gi|197283036|gb|ABQU01000014.1| GENE 56 54620 - 56419 2141 599 aa, chain - ## HITS:1 COG:jhp0432 KEGG:ns NR:ns ## COG: jhp0432 COG1217 # Protein_GI_number: 15611499 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Helicobacter pylori J99 # 1 599 1 599 599 995 83.0 0 MQEIRNIAVIAHVDHGKTTLVDGLLKQSGTFASHEQIDERVMDSNDIEKERGITILSKNT AIRYKNTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALALGI RPIVVVNKIDKPAAQPDRVIDEVFDLFAAMGANEEQLDFPVVYAAARDGYAIKNLEDDKK DLGPLFEAILEYVPLPSGNKENPLQIQIFTLDYDNYVGKIGIARIFNGKVKKGENVMLAK SNGEKITGKITKLIGFYGLARTEIDEAQAGDIVALAGFHSINVGDSIVDPNNPIPLDPMH LEEPTMSVNFAVNDSPLAGLEGKHVTANKLKERLEKEMQTNIAMKIEELGEGKFKVSGRG ELQITILAENLRREDFEFSISRPEVIVKEIDGQKCEPFESLVIDTPQDYSGSVIEKLGRR KAELKAMNPMGEGYTRLEFEIPARGLIGYRSEFLTDTKGEGVMNNSFLEFRPFSGNVETR NNGALISMENGEATPFSLGNIQERGVLFIPPQTKVYVGMIIGEHSRENDLDVNPIKAKHL TNMRASGSDDAIKLTPPRDLNLERALEWIEEDEILEVTPKNIRIRKKVLDPTQRKRKSK >gi|197283036|gb|ABQU01000014.1| GENE 57 56580 - 58622 1756 680 aa, chain + ## HITS:1 COG:no KEGG:WS1761 NR:ns ## KEGG: WS1761 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 530 660 328 451 477 73 47.0 3e-11 MIPFLDVEKINHKSAIKSDISGVQEEKSDFAEIFNLLSNQTSKKESNIKMEKKDSKDSKD SKDSLVQEGDKKQALKKPQEKEADALLPSKENKNTFTKEEVPKKEVVVENFAAIKQNQNQ TLQSLNQNNNTQKTIKTKQETIPQSPQNPKELLEFTKAQNTPKTLKDIVELSNKMQLNLQ KITIVEEKAIEEKFPLKEIIPQTSLVSTKKQSKVKQNKTDNIFNAILQDKDFIQQKVKKQ NPQQATIQEKNNKKETITQSPTNEILANNLKTTKKDSKNILDSKETKELNINYKEVKSEN PQVEIKSVEIKSKDKKAEKQENHSIATKTPKEETKNQSTTKQASIEIQAEKIKSNKPEST NTNAETKNIANLIQENKESPKETLLNPKEVETKIQSSKNNEIEPKNSKNTKPTESQTTTN PITIKEDKESKEDKSKNSSKIAKQEDKYTSIKQDAKEEMMQKYSDNRIQTKEEMQKSDEQ RFLDNLLKIETPQKSKQAPQIAKIEEGKDHKEKNNKIHQEIYQTSIQNQSLESFNPKNTF LHFSDKLRDALQNYKPPITKISLELNPENLGSVELTITKMGDKVNIQIGSNQTALQLFMQ NAQEFKIQLNNVGFNEVTMDFKDTSGNSFSQNNGGNFGNSQQQNPNQHQKRNENGLYIYK QAEESNLEISHLDLSFSYYA >gi|197283036|gb|ABQU01000014.1| GENE 58 58636 - 59775 1800 379 aa, chain + ## HITS:1 COG:jhp0843 KEGG:ns NR:ns ## COG: jhp0843 COG1843 # Protein_GI_number: 15611910 # Func_class: N Cell motility # Function: Flagellar hook capping protein # Organism: Helicobacter pylori J99 # 108 366 19 268 363 187 43.0 3e-47 MTISSSNNYLNYTANATARTAASTREESNTDTGNDTDTGSDIDTGNDTNTGNGGSDIDTG NDTNTGNGGSGTGDSGSGTGNGGSSGNNTGDSSDDTDNTFPGDTPIIKDEEEDNNGLGTE AFMRLFLEQLKNQDPTAPMETQEILTQTAQLTQVEAQTQMKNAMEQMTTTMQSMQETNEK TIEAQQKLIKTQEKMLETMGVLAGSIQDSSIIGGYNTVGMIGNIAETPYTALKVEKNEAI DFELYFDEPIDPTKGQPKITITDKDNNVIREIDLAAQDEEGNYIYLNKEGYVEFEWDTRD SKGKFVANGDYTVKAEYNLDSATNQYKETQLGRGEVQSILFDAGVPYVKLGDHLTVPIIY VTSYYKKTGEGIQLPDSSN >gi|197283036|gb|ABQU01000014.1| GENE 59 59787 - 62081 2714 764 aa, chain + ## HITS:1 COG:jhp0844 KEGG:ns NR:ns ## COG: jhp0844 COG1749 # Protein_GI_number: 15611911 # Func_class: N Cell motility # Function: Flagellar hook protein FlgE # Organism: Helicobacter pylori J99 # 1 333 1 337 605 269 47.0 2e-71 MVGSLYSGISGIKTHQVGIDVTSNNIANINTTGFRANTPEFKSLFSTNLNYVNSNSPVAN DYNYGVTLGSNAINTNDGTYVSADGDFNVAYSGKGWFVVGLNKNGEFDINNPNYNVKQNY FTRDGSFSLDGEGYLVNSSGYYMYGINLGKIAADGTLTGTNNLQQDYANLGGSVLEPIQI PKELHYQPTLTTEVNLAVNLNRTQNAKGITALQDINGNFSMEKFLAQDINSLMDSSGKLL DAKNYKDITFSIEQNGVTTNHTFTYGDTGANGFKSVGELIDLIKEQTGLDLALKLDENGN PSDCSLYLSNNSMQNVNVSISGRLAEKLGLSTNNEILDSAFTSQIKTFEENAVYQNGDYV NYQGMIFQKNGEGEALGNPIDNPESWNLVDSTKVPTYQENQEYLEGDFIVYEGRVYQRSA EEITMVEDPETGELVPQNPAEDTQAWIEVGENTKGMIAEYQAGNNYQENAMVTLNGILYQ KVNGAGNTNPSEDSSGWRILMSDSLDSTQLNVPTYETNTEVYSDTGEKFILKNQYILIEQ GDQTATPPINERWEVRSAIYDSTGKTMISQNPVLSEISFNADGSANATPFAVEFQGGSIQ VNLAQSDDGKSSSNFAYTDSALKSATQDGTESGIMDDIVINEDGIILVNFTNGKVEPIGR IGIAAFVNDQGLSKVGGNLFEMNAMTINGETSVVSGPPLLAWEETGTASLKYGQVLDHML ETSNVDTGTALTDLIVYQRGYQMSAKSITTADQLMQEAIQLKRS >gi|197283036|gb|ABQU01000014.1| GENE 60 62193 - 62960 491 255 aa, chain - ## HITS:1 COG:no KEGG:Cj1433c NR:ns ## KEGG: Cj1433c # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni # Pathway: not_defined # 1 254 114 367 368 335 61.0 1e-90 MIEIHLAESCNLNCFSCSHFSQLAPNEMPNIQFYEKEIKRLSEITNGLVGRFHLMGGEPL LNPNCKDFFAITRKYFPNSAIWLVTNGILLTKQETSFWESCKNNRIEIHPTKYPIKVDWN LIKAKCESYGIPLKFFNNENVVKTSIKFILEPKGNIDAYNSFIKCGMANNCVQLRDGKLY PCNIAANIEFFNQRFNQNLQVMDSDFIDIYKAKDYTEILQFLAKPIPFCRYCNVAKWRSI GEWKTSKKEIGEYLE >gi|197283036|gb|ABQU01000014.1| GENE 61 63105 - 63251 120 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGGGGILAPNEQYKKALQDAEDEILKLKQSLEILKQDSKEDLREIQTL >gi|197283036|gb|ABQU01000014.1| GENE 62 63326 - 64387 982 353 aa, chain - ## HITS:1 COG:jhp0617 KEGG:ns NR:ns ## COG: jhp0617 COG0582 # Protein_GI_number: 15611684 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Helicobacter pylori J99 # 1 352 1 352 356 352 53.0 4e-97 MRYPIDFKDDFAQNLLFWIERFVYSKLNSLSNHQVQNKKDIILALNALRKGVKSIQELQE ICKQCRNAGLIGINTYFTPLMKLYEYLNYLGLASLKEVDEEMLKEFLTIHTSSLSDATKK NYRIALINFFGFIDKQNEDDDSTSYIFRIELKNWGGLRGKSGQKLPSYMNEEEVQRFLNG IETYPFKHQDLGARNRLLLKTIIYTGIRVGEALNLKIKDIMLDGEFYVIQVKGKGNKPRV VMIKAKNIHSDFGAWINSRPLEVENELLFCNHKAKKLTQAYVSRIVEQVLLTNGIRKEKN GAHMLRHSFATLLYQKSQDLVLVQEALGHASLDTSRIYTHFDKQKLKATTEIM >gi|197283036|gb|ABQU01000014.1| GENE 63 64591 - 65289 459 232 aa, chain + ## HITS:1 COG:SAP027 KEGG:ns NR:ns ## COG: SAP027 COG5527 # Protein_GI_number: 16119227 # Func_class: L Replication, recombination and repair # Function: Protein involved in initiation of plasmid replication # Organism: Staphylococcus aureus N315 # 10 229 4 212 286 84 30.0 2e-16 MKNYLSTIKDNIVYHNDMNKFVFKNFNEADFNLFFTICFFAKEQRNNGELISLSFNVLKR FIPNERNKKRFYGNIVEFARKLNSLSTKEYNIDEDGYRKFSINSFFEQIEVDEKNEILSF RISKKSLYLIYEVFQRYTIFDMKDFCEIKGKYTKNLFRLLKQWEGSGKFQINYENFLVLF DIPKSYTAFFIEDKVIKPSIDLLNGKNSKNKVYFANLQYEKIKDKHSKRARR >gi|197283036|gb|ABQU01000014.1| GENE 64 65944 - 66366 330 140 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310754|ref|ZP_04809909.1| ## NR: gi|242310754|ref|ZP_04809909.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 140 1 140 140 276 100.0 3e-73 MKSVKTLALAGLSILFVACGGNDFVEMKNDRGWNQELYEFGLSELQKKYPNYTPYHYESL KTASFLQRGAESYRFAQDFINRLESNAVLYPKDASYNDVVFLYKDDKDFRLVWISCNIQT IGKNKGQKYCSFNDKSRGIY >gi|197283036|gb|ABQU01000014.1| GENE 65 67798 - 68262 524 154 aa, chain + ## HITS:1 COG:Cj1666c KEGG:ns NR:ns ## COG: Cj1666c COG3019 # Protein_GI_number: 15792970 # Func_class: R General function prediction only # Function: Predicted metal-binding protein # Organism: Campylobacter jejuni # 21 148 17 143 145 167 61.0 7e-42 MQNQTKKILFVALMAPLCMFGKEVDIYSSPFCGCCIKWGDYLQNNGYKVTHHKNDDFMAI KEKYKIAPQNQSCHTGVIEGYAVEGHVPLSAINWLLENKPKDVVGISTPGMPIGSPGMEQ GNTKEEYPVVLLYKNGDSKTFAIYKGDELIKQVF >gi|197283036|gb|ABQU01000014.1| GENE 66 68265 - 69170 688 301 aa, chain - ## HITS:1 COG:Cj1544c KEGG:ns NR:ns ## COG: Cj1544c COG0697 # Protein_GI_number: 15792852 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Campylobacter jejuni # 1 293 1 297 298 229 51.0 7e-60 MQKQIIFSILMVIAMIFWGSSWPSGKILIQYTSADIVAFWRFFFAFLASIPLILFLKISL RIDTKALKILAIAAVLNGVYSILFFIGLNYGSAGKGGVLVTVLIPIFTYLIAYRIYKKDS QRKMKGNEILGLALGICSGICLLNLGSVAELFGKFNTLFLLCALDWAILTLVCQRLRIHP LAINFYITLFTIILYLPLFLFHSNMLEVFSYDGRFWSMLFVAAVLSTAIGTSIYYVGISK LGATKASSFQLLVPATALGSSFVILGEIPSVLTICGGILAIIATYLINLYKPKIKTSHSS D >gi|197283036|gb|ABQU01000014.1| GENE 67 69172 - 70002 835 276 aa, chain - ## HITS:1 COG:Cj0790 KEGG:ns NR:ns ## COG: Cj0790 COG0788 # Protein_GI_number: 15792128 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate hydrolase # Organism: Campylobacter jejuni # 1 276 1 274 274 322 59.0 7e-88 MRFVLKIQTPDKKGLIAKITQVIFQFDLNILKNDEFVDKEYNVFFMRSEVEGECEIGELN KAIQEILGEEAQIEITQCTKKKIIILCTKESHCLGDLLIRYDSGELNADILAVISNYDTL KPLCQKFDLPFIFISHENLDRETHENKVIEAIKQFSCDYIVLAKYMRILTPHFVGMFEGK IINIHHSFLPAFVGANPYKQAYQRGVKIIGATAHFVNNELDEGPIIYQDITKIHHAMDWK EMQKHGRDVEKIVLSKALNLALEERIFVYQNKTIVF >gi|197283036|gb|ABQU01000014.1| GENE 68 70002 - 70877 995 291 aa, chain - ## HITS:1 COG:HP1435 KEGG:ns NR:ns ## COG: HP1435 COG0616 # Protein_GI_number: 15646044 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Periplasmic serine proteases (ClpP class) # Organism: Helicobacter pylori 26695 # 2 266 7 272 292 257 49.0 2e-68 MKIVKIFLAPFDFIMKYFKALVLLLIVFLIFAPSFKESENPANVARIDLKGAILQSDSFL EEITELENNPNIKGILLVIDSPGGAIAPSVEISQTIKRIKNKKPIVAYAQGSMASGSYMA GMWANKIVANSGSMIGSIGVILNGVDVSELAEKLGIKTQILKAGIYKEAGTFMRPWNKQE EEMLRNLINEQYWLFVKEVVEARKLDIKKEKDFAQGRILSANNALKLGLIDSVGGIYEAQ NTLFELAKIEEPMWLKKDKMDLYLERIIGENVSLGIQRAIYGLYVEILKGN >gi|197283036|gb|ABQU01000014.1| GENE 69 70988 - 72790 2047 600 aa, chain + ## HITS:1 COG:HP0355 KEGG:ns NR:ns ## COG: HP0355 COG0481 # Protein_GI_number: 15644983 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Helicobacter pylori 26695 # 4 600 6 602 602 947 78.0 0 MENPLSKIRNFSIIAHIDHGKSTLADCLIQACGAISEREMSSQVMDTMDIEKERGITIKA QSVRLNYVYKGEKYILNLIDTPGHVDFSYEVSRSLASCEGALLVVDASQGVEAQTIANVY IALENNLEIIPVLNKIDLPAANAGRVKSEIEQTIGLDCTQALEVSAKANIGISELLNKIV ELIPPPSGDINAPTKALIYDSWFDNYLGALALVRVFDGSIKVGQNIYIMGSGKNHEVLGL FYPHPLKQEKTKEIRCGEVGIVILGLKNVTDIAVGDTITDFKNKTKEPIAGFEPAKPFVF AGIYPIDTDRFEDLRDALEKLKLNDSSLNFEPETSVALGFGFRVGFLGLLHMEVIKERLE REFGLDLIATAPTVIYEVTQTDGEVVMIQNPSELPPEQKIAQIKEPYVRATIIVPNEYLG NIITLVSKRRGIQKKMEYLQETRVLLEYHIPTNEIVMDFYDKLKSCTKGYASFDYEPIGY QEGDLVKLDIRVAGDIVDALSIIVPKSKAYEKGKELVEAMKEIIPRQLFEVAIQASVGNK IIARETVKSMGKNVTAKCYGGDITRKRKLLEKQKEGKKRMKAIGKVNLPQEAFLAVLKID >gi|197283036|gb|ABQU01000014.1| GENE 70 72832 - 73581 675 249 aa, chain + ## HITS:1 COG:CC0877 KEGG:ns NR:ns ## COG: CC0877 COG0501 # Protein_GI_number: 16125130 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Caulobacter vibrioides # 30 247 29 246 251 171 39.0 1e-42 MNLYFSFKQVLSIASIFFLCACSSTLYTDRTQLMLLDQQQEVALGEQSANEILKSSKLSN NAKQKAMVNRVGQKIAAVADHPDFKWEFYLLEDNQQNAFCLPGGKVFVYSGIMELIENDD ELAVVISHEVGHTILRHGAERMSMQMLQQLGGSLLGALLGNQYSEYSGLFNKAYNIGSNV GIMLPFSRSHELEADKVGIILMQKAGYNPKAALNFWQKMSAGKQSSSDFFSTHPSDSTRI QEIQKILQN >gi|197283036|gb|ABQU01000014.1| GENE 71 73688 - 74995 1079 435 aa, chain - ## HITS:1 COG:Cj0088 KEGG:ns NR:ns ## COG: Cj0088 COG2704 # Protein_GI_number: 15791476 # Func_class: R General function prediction only # Function: Anaerobic C4-dicarboxylate transporter # Organism: Campylobacter jejuni # 4 315 3 310 445 356 68.0 6e-98 METMMLILQIIVLLGAIFVGIRLGGIGIGYAGGIGVIILGLGLGMTPGAIPWDVILIIMS VIAAISAMQLAGGLDYLVQIAERILRSNPKYINYLAPTVTYFLTILAGTGHTAFSMIPVI VEVAKEQNIKPSAPLSIAVVSSQIAITASPVSAAVVYMTGVLEPLGWSYPLLLGIWIPTT FVGCMITAFIMTMFYDLDLSKDPVYQERLAQGLVKAPVGAQNMELKEGAKLSVAIFVIGV LCVVLYATAISKIGGKPVLIENVIVGRDAAIMSFMLGIATLIVMLCKIKPDKIADTSVFK SGMVACVCIGCSLAWKYFCRWLYKRNWRFICRVSFKNPSTFGSCLFLCKYAFVFSSSNSK SNYSSSCSSTWNHCGKSGRFLYACCFICGGFCTFRASNLSNTSRCCANGRYRFYKNWKIY FQSRFLGSRNLSHCI >gi|197283036|gb|ABQU01000014.1| GENE 72 75000 - 76412 1919 470 aa, chain - ## HITS:1 COG:Cj0087 KEGG:ns NR:ns ## COG: Cj0087 COG1027 # Protein_GI_number: 15791475 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Campylobacter jejuni # 1 468 1 468 468 608 63.0 1e-174 MATRKEHDFIGELEIPDNVYYGVQTYRAVENFHMTSRHLKDYPFFIKAFAQVKKAAALAN KEVGVLDADKADALAKAADRLIAGEFIDQFVVDMIQGGAGTSTNMNVNEVLTNIALESMG HKKGEYQYLHPNDHTNLGQSTNDTYPSSIKVATHEKLGHLLEAMEELKDELLKKASEYKD FIKMGRTELEDAVPTTLGNTFNAFASYIKSDIEKLKKAREVMETLNLGATAIGTGINCHP DYKNIVEKKLKEITGVNFRPAEDLIAATQDTADFVYVSGCLKTAAVRLSKIANDLRLMNS GPRCGLGEINLPKMQPGSSIMPGKVNPVICEAVGEACYEVIGNDVTIMLCSERGEFELNA FEPGIAYALFNSVVVLENAMRTLAQKAIKHLTANPEACKQSVLNSIGIVTAFNPVLGYEK SASIAKEALETGKSVGDICLERGYLPKEEIDKILDPKNMLNPQMKTKRQG >gi|197283036|gb|ABQU01000014.1| GENE 73 76531 - 77889 1404 452 aa, chain - ## HITS:1 COG:jhp1110 KEGG:ns NR:ns ## COG: jhp1110 COG0534 # Protein_GI_number: 15612175 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Helicobacter pylori J99 # 3 452 5 452 459 392 49.0 1e-109 MSKIDLKTAKISKLFFTYFLPSLVAMLALSTYSTIDGIFVGKKLGENALAAIGIAWPIFP ILIAFELLFSVGAAAMSSYFLGKGKAFRARIIFSSVFYFALLTSVVGGIILYCFSDFIAL YLGASETLLPLVQEYTEIIYLGAFIIVLHPMLDIFAINDKQPLLAMIAMIVGAAMNIVLN YLFLFVLELGIHSSALATVLGHGIGMCILLQHFLRKKGNLYLIKAFDLYAILMATKNGIP QSSSEISVSVMMLIFNHTIAGIAGDRGLAIYSVLMYVGIIPFTILLSMAQGVQPIASFNY GANLMERVRGIFYFGLGVSFFGGIILYGIFYFLSPFIIPLFLQDDIILRDSALALDIKEA MDIYFLSYILLGINIVSAIFFQSIQRTLSSFVITFSYTLLFALLFVIFLPKIYDFYGVII SYPLGILCASCVAVAIIVYETKRGILNSLIKK >gi|197283036|gb|ABQU01000014.1| GENE 74 77876 - 78577 581 233 aa, chain - ## HITS:1 COG:jhp1145 KEGG:ns NR:ns ## COG: jhp1145 COG1587 # Protein_GI_number: 15612210 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III synthase # Organism: Helicobacter pylori J99 # 43 223 36 218 223 90 31.0 2e-18 MKKVYYITKKNSNKTMQDIQYLELLEICFIQDDCLLEKIRKSDCLIFTSKNAIFALEHFV PQIWKKLSCCVIGNGSKKALESFGIKAEFVAKNPYGVSFGEELGEFLANKKPLFIRGQKV ASNLLEILRSKGVFAIESILYQNKILKLSQKQREILKPKKDSIIFFSAPSSIKAFLKNFS WEDDYIALCIGKTTKNEAKKLLGENAEILLSPKVEIESSLEFAKEIGGYNVKN >gi|197283036|gb|ABQU01000014.1| GENE 75 78614 - 78940 248 108 aa, chain + ## HITS:1 COG:no KEGG:HMU00530 NR:ns ## KEGG: HMU00530 # Name: not_defined # Def: thiosulfate sulfurtransferase GlpE # Organism: H.mustelae # Pathway: not_defined # 24 106 1 83 85 69 38.0 3e-11 MYLKRKSLATPFNPAKDKQEEFIIIDLRSRGYFLISHIQNALNIESLQRISYIAQENPDK KILLYCHSGATAAEFGDKLAKMGYHNIFYLDENFFNLPKIGFNIQYNT >gi|197283036|gb|ABQU01000014.1| GENE 76 78937 - 79392 508 151 aa, chain - ## HITS:1 COG:BS_yfkJ KEGG:ns NR:ns ## COG: BS_yfkJ COG0394 # Protein_GI_number: 16077855 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Bacillus subtilis # 6 146 3 146 156 117 46.0 6e-27 MSKIESILFVCLGNICRSPLAEGIARDLAQKRGLELKIDSAGTSGWHIDEPPCANSIAIA RKYGIDISSLRGRKVSVYGDDVFDWIVAMDKQNYHDLLKMGFDESKVKFIGDFGLEGQEI PDPYYYKNLEGFEKIFAMLKTAIAEMYKQLS >gi|197283036|gb|ABQU01000014.1| GENE 77 79400 - 80425 1116 341 aa, chain - ## HITS:1 COG:Cj1023c KEGG:ns NR:ns ## COG: Cj1023c COG0136 # Protein_GI_number: 15792350 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Campylobacter jejuni # 2 340 3 341 343 479 67.0 1e-135 MKKFNVAVVGATGAVGEEIFRILEERNFPINKLVPLASARSVGREISYKGETYKVQELTH NVFEEEDIEIAFFSAGGSISAEFAPSAAKAGAVVIDNTSHFRMQENVPLVVPEVNPQDIA LWEKTGIIANPNCSTIQMVHILAPLHKAFGIKRVDVSTYQAVSGAGKKGMEELVLQMQKF FDFSLDSVEPKAFPHRIALNLIPHIDVFLDNDYTKEEMKMIKETNKIMHSDFAVSATCVR VPVLRSHSESITITFEQEITADAAKDVLSKAESVVLVDNPKEKSYPMPSLATDTDETYVG RIRVDNYDKHILHLWCVADQIRVGAATNAVRIAEKWIKMQK >gi|197283036|gb|ABQU01000014.1| GENE 78 80438 - 81736 1215 432 aa, chain - ## HITS:1 COG:Cj1024c KEGG:ns NR:ns ## COG: Cj1024c COG2204 # Protein_GI_number: 15792351 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Campylobacter jejuni # 1 431 1 431 433 473 60.0 1e-133 MKIAIVEDDINMRKSLEIALAEYEEFEVVSFKSAKDALKKLDDSIDLVITDINMPQMDGI EFLRTLNGRYEALIITGNATLNKAIDSIRLGVKDFLTKPFDIETLVEAIHRAKKAKEIIT KTPKKNMIEQKHSFIATSPALQKALNLANKAAKTDASVLLLGESGVGKELFANYIHNNSP RVKAPFVAINMAAIPENLLESELFGYEKGAFTDATEGRAGKFENANGGTIFLDEIGEMPA NLQAKLLRVLQEKEVVRLGSNKPIKVDIRFVAATNADIQKKIKKGEFREDLFFRLQTIPI NIPALRERLEEIIPLCEWKLEEVDKQYGIGKKKWGKGAKEQLLSYKWPGNIRELLSVVER AAILCENDTIMPEDLFLSSREGGGAKKIASLEEELIYEALKAADSDIDNAAQMLGMQKEI LQSKMNHYNIKL >gi|197283036|gb|ABQU01000014.1| GENE 79 81733 - 82143 259 136 aa, chain - ## HITS:1 COG:no KEGG:WS0366 NR:ns ## KEGG: WS0366 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 15 121 33 138 149 68 35.0 5e-11 MQKILIGIFLCSFIEASEYIFSYRVAVENGIVLSEKYYFSPAMVNAETLNKVKNPYKQCE IVHNAKSEKEFLKYSKEDILECFFKWGVKLEDRSTASDYKGAYISFLSIPATRIKIEYES GIAKIYHLMANTKEQR >gi|197283036|gb|ABQU01000014.1| GENE 80 82143 - 84632 3095 829 aa, chain - ## HITS:1 COG:HP0701 KEGG:ns NR:ns ## COG: HP0701 COG0188 # Protein_GI_number: 15645324 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Helicobacter pylori 26695 # 7 815 10 817 827 1090 70.0 0 MSDLLNQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTS KAKYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAA MRYTEAKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMA TNIPPHRVDEIIDALVYLIDNPKAELNEILQFVEGPDFPTGGIIYGKNGIREAYETGRGR IKVRAKTHIEKTKTKDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREGI RVVIELKREAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKIFTLLELLGLFISHRKSV VIRRTIFELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQFNLSEIQA QAILDMRLQRLTGLEREKIENEYQELLKEIEYLNSILRSEDLLNKIIKEELLEVKEKFST KRLTAIEEDYESIDMEDLIPNEAVVVTMSHRGYVKRVPVRTYEKQNRGGKGKISANTHDD DFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIGKAVVNLINLAPDEKIMATI TTKDFNEDKSIAFFTKNGIIKRTNLSEFKNIRNVGVRAINLDENDELVTAKIISPAIQQI LVVTYEGMCVRFSVDNVREIGRVARGVTAIKFKIPKDYVIGATVVSNENEEILSVSEKGI GKRTEINEYRITNRGGKGVIAMKLTSKTGKLVGVVNVDENMDLMVLTSSGKMIRVDMQTI RKAGRATSGVIIVNVDDDKVVSIARCPKEEKEEEVIEEENGLLDLKNEE >gi|197283036|gb|ABQU01000014.1| GENE 81 84676 - 85416 536 246 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310772|ref|ZP_04809927.1| ## NR: gi|242310772|ref|ZP_04809927.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 246 1 246 246 475 100.0 1e-133 MAKVILFLLLVGNLYAQYPTWIKDGLKIVASFGAQDFKEGYGIVINEGLILTSSSLVYEK DRAKDIVLYNSESLEEPITCLSHAQILALDDTLGLAILKAYNFTDIYCNVLPKPNFRLLH FKSKFFDILKKPVEISNAEGLMISYFLEQEWLNFGIEKISWQDLQTMLQENKRNLLGMPL FAGNDFLGILVQKREKQYLSLLKHQEILEFLCKINQNTVILESMPAYKKTCDLIKINRDI SKNKVK >gi|197283036|gb|ABQU01000014.1| GENE 82 85499 - 85975 513 158 aa, chain + ## HITS:1 COG:jhp1334 KEGG:ns NR:ns ## COG: jhp1334 COG0652 # Protein_GI_number: 15612399 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Helicobacter pylori J99 # 3 155 4 156 162 209 63.0 2e-54 MELKDFNLSKDELAALQNAIIHTEKGDMKIKLFPEAAPNTVANFASLAKSGFYNNLNFHR VIAGFVAQGGCPNGDGRGGPEYRIKCELQNNPHKHLRGTLSMAHAGRDTGGSQFFICFAP QPHLDGEHTVFGQIEDKDSLKVLDSIKQGDKILNIEIC >gi|197283036|gb|ABQU01000014.1| GENE 83 86027 - 86197 94 56 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310774|ref|ZP_04809929.1| ## NR: gi|242310774|ref|ZP_04809929.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 56 1 56 56 70 100.0 3e-11 MLLEMFILKIEYLVENFKSMPFKIRNFKKERKLLFLEIVYFKKTTDYSFTASFMHK >gi|197283036|gb|ABQU01000014.1| GENE 84 86376 - 88925 2826 849 aa, chain - ## HITS:1 COG:HP0779 KEGG:ns NR:ns ## COG: HP0779 COG1049 # Protein_GI_number: 15645398 # Func_class: C Energy production and conversion # Function: Aconitase B # Organism: Helicobacter pylori 26695 # 3 848 5 853 853 1244 70.0 0 MSFFEEYQEQVKQRAKQNVPPLPLTKEQVSEVIALLKKGERQEELVELISNRVSPGVDEA AKVKAAFLNEIVEGKISINGISKTLAIKLLGSMLGGYNIAPLIHALKSSDSEVAKSAAEA LKHTLLVYDSFGEVVELSKNNAYAKEVLESWANAEWFLAKEPLAEKITAVVFKVDGETNT DDLSPAGDAFTRSDIPLHAQAMLKSRTQNAFGRIEELKKKGYPLVYVGDVVGTGSSRKSA CNSLVWHMGRDIPYIPNKKAGGLVIGGVIAPIFFNTCEDSGCLPIVAPVGELNEGDVIDI YPYKGEICKNGAVVSKFSLKPNTLADEIRAGGRINLIIGRGLTTKAREALKLPKEDIFAK PQVPQGEAKGFTLAQKMVGKACGVEGILPGTYCEPRVSTVGSQDTTGAMTRDEIKELASL GFSADFVLQSFCHTAAYPKPADVNLHATLPQFMSSRGGVALKPGDGVIHSWLNRMVLPDS VGTGGDSHTRFPIGISFPAGSGLVAFAAVTGSMPLDMPESVLVRFKGKMQPGITLRDLVN AIPYYAIKQGLLTVEKKGKKNIFSGRILEIEGLPNLKVEQAFELSDASAERSAAACSIAL NKEPIIEYLKSNIALIEAMIQAGYQDAKTLKRRAEKMQEWIDNPVLLKADSNAEYAAIIE INLDEITEPILACPNDPDDVATLSEILANPNRPHKIDEVFVGSCMTNIGHYRALGEVLRG EGMVPTTLWVAPPTKMDAKELVEEGYYSLFGAAGARIEIPGCSLCMGNQARVRDNAVVFS TSTRNFDNRMGKGAQVYLGSAELAAICALLGRIPTKKEYLELIPKKIEGKEEQIYRYLNF NLLENWELN >gi|197283036|gb|ABQU01000014.1| GENE 85 89141 - 90064 768 307 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 1 303 1 304 308 300 51 2e-80 MKVAHCITEIIGNTPLLFLNHLSKESGANIYAKCEFLNPSGSIKDRIALNMIETALNEGK INANTTLIEPTSGNTGIGLASICAAKGIKLILTMPESMSIERRKLLSAFGAKLELTPATQ GMKGAVNRALELQKEIPNSLVLQQFQNPANPEIHRKTTALEIWEAMEGKIDVFVSAVGTG GSLSGIGAVLKAKNPNIKVIAVEPINSPVLSGGNPGPHKIQGIGAGFIPETLDTSLIDEI LQVDAELAAEESRKIAKNEGVLVGISSGANLWGARQMAKKYPGKNIVTILCDTGERYLST DLYSTAQ >gi|197283036|gb|ABQU01000014.1| GENE 86 90066 - 91022 824 318 aa, chain - ## HITS:1 COG:HP0312 KEGG:ns NR:ns ## COG: HP0312 COG0523 # Protein_GI_number: 15644940 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Helicobacter pylori 26695 # 1 314 1 316 321 277 44.0 2e-74 MAKIAVNIVTGFLGSGKTTFLSELLRDSRENIAVLVNEFGDSGLDDSILASFFVEEQTIL LNQGCICCNRRQDLADKLKEILNLYHTSGKKLDKVVIETTGLATIEPILFTILSDTFLQN HFFVNAVFTCIDSLNGLEHLKNEENIAQIVNSDYLLITKTDIKQDTKMLEKELRSLNYSA LIFNKNEFCNDEFFNINFKKRLVNNLKNLNSHNTNIKTISLNIQGKMDWSAFGIWLSALL YKYGDKILRVKGLLNINDEYLINVNGVRHLVYPPIHIKKTKTYMESNLVFISKEMDLDKV FSSLQSFSKLLNIQIQTC >gi|197283036|gb|ABQU01000014.1| GENE 87 91015 - 91350 299 111 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0673 NR:ns ## KEGG: JJD26997_0673 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 1 107 1 107 109 140 65.0 2e-32 MCVLCGEMISSFHWSDLSFDEQGANLSALQDQRDRMRARLKRVKILNEILSFYRLNIKEW QGSKFILSDLVGKSVIVNDLGDLWQKVQELSKKEIDLLDDNFIKFMQDKNG >gi|197283036|gb|ABQU01000014.1| GENE 88 91351 - 92232 984 293 aa, chain - ## HITS:1 COG:HP0310 KEGG:ns NR:ns ## COG: HP0310 COG0726 # Protein_GI_number: 15644938 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Helicobacter pylori 26695 # 1 293 1 293 293 556 89.0 1e-158 MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGVPRLLNLFKKYNLPSTWF APGHSIETFPEQMKMIVDAGCEIGAHGYSHENPIAMTAKQEEDVLLKNIELIKDLTGKKP SGYVAPWWEFSNITNELLLKHGIKYDHSLMHNDFTPYYVRVGDKWTKIDYSLEAKDWMKP LVRGQETDLVEIPANWYLDDLPPMMFIKKSPNSFGFISPRDIGQMWIDQFDWVYENMDYA IFAMTIHPDVSGRPQVLLMHQRIIEHINKHEGVRWVTLNEMADDFIKRCPRKK >gi|197283036|gb|ABQU01000014.1| GENE 89 92253 - 93068 700 271 aa, chain - ## HITS:1 COG:HP0309 KEGG:ns NR:ns ## COG: HP0309 COG0388 # Protein_GI_number: 15644937 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Helicobacter pylori 26695 # 3 268 11 283 292 270 51.0 2e-72 MKIKVGLVQFSPKSYNIKNNIKESLSLAKRAAKKGAKLIVLPELFDSGYCVEDKDDEFAI NFSEDSYTIKKLKEFCKENDVYIVASSIQKEKTKLYDSAYIVSKNGILDTYKKTHLWGDE NKRFERGDSFNVFEINFGNASVKVGIGICYEIGFGEIAREFALKGAKILIYPSAFGKQRL YVWDLASRARALENGAFVLACNRSGKEVSKLNGKNLYFAGHSRIINPKGEIIKEIKDKSG VCVVNLDLNEVDLQRENLPYLRDLNLTLFRG >gi|197283036|gb|ABQU01000014.1| GENE 90 93292 - 94401 1368 369 aa, chain - ## HITS:1 COG:no KEGG:HH1023 NR:ns ## KEGG: HH1023 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 369 1 371 371 605 77.0 1e-172 MKKNIVFFEARGGSDKGPDGYRKDTMPMVNALKAKGWSAEVVFFTDEILRDEAERNKIYE HVKNTADGYVSRVNPGNLKEEKLYFDVLRKLCESGLVGMPHPDAMIGYGAKDALTKLADT QLVPSDTYAYYDPAEAKRIGVVWSDKHDFKKTFPKTLAKGERVLKQNRGSTGEGIWRVRL ESASEYGKLDSLPLDTKIICTEAKDNHTEERRLGEFMDFCEHYLVGDNGMLVDMTFLPRI KEGEIRILMLYKTPVYVVHKKPAEGGDAFSATLFSGAKYRYDEPKDWQALIDWFLAQLPE IRSKLGNYDLPLIWTADFILDTDANGKDKYVLGEINCSCVGFTSPAEFMEKIAVMVGDNI VNIVSEKKA >gi|197283036|gb|ABQU01000014.1| GENE 91 94561 - 95640 1059 359 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310782|ref|ZP_04809937.1| ## NR: gi|242310782|ref|ZP_04809937.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 359 1 359 359 710 100.0 0 MFFKNFCLTLFLGLCLANAYELKNYEDAKIGKTLSGNKLQEVLKKAKETKKGTEGQKGVK AILPVDSFTFDSTTDILLEVTDVNGNLLYYLAAPNNKSNFCRIDEFIDSENEKTYQWTSY KTAQGATNALADTYGRNFPASGGGDPRVAINSAGMWIYATSYADFADKIIFSRNEWNKNA SGGVRDDYFHSLINADGTLQITSKITNYSVDMVKTSQPYPLNQWVYIQAYQSGNSYTIGW KTADGTEHIAGPKTFARQADIVADTFKTFLQDYQGKNDCVMVREFFWQPGVNMFEIMDNY NAVDKEIEQIQRKVFRLDTIFVNEINKAIMGQPSSLTLNDFDVYVDNNYTIYVVDIRGF >gi|197283036|gb|ABQU01000014.1| GENE 92 95651 - 97318 1866 555 aa, chain + ## HITS:1 COG:no KEGG:CCC13826_0026 NR:ns ## KEGG: CCC13826_0026 # Name: ompR # Def: response regulator # Organism: C.concisus # Pathway: not_defined # 81 554 131 576 586 179 33.0 2e-43 MNITQMGIQNLKSGSMKLETKGKSIQQINQELANTKVEQFLSGTPTPKVYGSYSRNTLMG IVEKNLSTSQVLDRYISDIELNSLGQSKTLKTAMGQAEVYLDYFGDGLESNLGISQIQKM GDLFRLDSNGDGFLNRDDEMFSKLKIKVDKGNGESKIANLSDVVGTIDLYDFIKGYDKNN ASQIKEWRDNFHTERQIMINGKMTLNSFYPYEDIRLYRDDEMKLFPPEQRYKQIKQEDIR AMFEAYGDSEGWINLKDKAVNEALFASGDIITNFAYKKTNLAGVEVLEEFNVVDRLDNGS RTPKYEGMNIREFEEAWYRDHPRETNYEQGYAEAFNELYNNYYRFKESFESKKAEFLNDE FVAQEYKDKIAQMDKSAEMRAIEEEFEKITGMGFSEARFEEIKNAINDPIKQKETIAAMS DLDAVTSMKLEKDGRITLRFDSGREILVEGLYNDTGELHITKKGERASISLEAQSMTNKE LNNLDFKEYGIKEGDNIISLQEIGAKMIERLNNANGKFLGFVITTHSNKEIIVDNLYNIF TLDLLNQQRTFEAEI >gi|197283036|gb|ABQU01000014.1| GENE 93 97319 - 98158 224 279 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 17 267 16 270 285 90 25 2e-17 MIIGIKQRLRISRIVDFGVYLQSGQEEVLLPKKYVLEDSKIGEEIEVFLYHDSEGRVIAT TLEPKAQRGEIALLKVVGKNEWGCFLDLGIAKDLFMPTKTPHKFNLDSQVLVFITTDREN RLIAKSNIKSFLKSFKEAPKGLYKVSSKVEIVPFRESNLGYECVVDGEYLGLLYKNEIFS QININQKIEAFIKRIYPNGKCDLSLKPPMAKKDTTNEAKKVLERLKENGGHLGLHYDSAP QEITEILKMSKKSFKSALTWLLEQDKITLKAKEGIWLKD >gi|197283036|gb|ABQU01000014.1| GENE 94 98155 - 98715 515 186 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310785|ref|ZP_04809940.1| ## NR: gi|242310785|ref|ZP_04809940.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 186 1 186 186 312 100.0 6e-84 MNLANQKRNRKEWIKNLKSQIIELVSTGKTDKEIRKQIKQEFAKYSTKLESIISIVFIAL LVAVVLLGVHISYTILLWEANIYAYSDGIWSPYVSMLLFGLGCVLLFVIFSFWFGFFVDW FCCNKILNDSLDENFYLKLFKTLLILACLGFIIFMVMIFVVGWQISEFYGMPLGRSLYET FMEIID Prediction of potential genes in microbial genomes Time: Tue May 24 02:08:03 2011 Seq name: gi|197283035|gb|ABQU01000015.1| Helicobacter pullorum MIT 98-5489 cont2.15, whole genome shotgun sequence Length of sequence - 1149 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 1146 1233 ## Cj1677 putative lipoprotein Predicted protein(s) >gi|197283035|gb|ABQU01000015.1| GENE 1 1 - 1146 1233 381 aa, chain + ## HITS:1 COG:no KEGG:Cj1677 NR:ns ## KEGG: Cj1677 # Name: not_defined # Def: putative lipoprotein # Organism: C.jejuni # Pathway: not_defined # 112 381 854 1120 1120 105 28.0 2e-21 QRERLKNQQALLENYKQQRASYLNELTKDNKELKRVSSKESTSLSTYANNSNIKSDAIEV VDYYNKDALASLDNLQATTKANQETYSNLDLLRELDDIFISHTGDKDNLYTFALPYTRYT SAQLDGGVGTLKSHASGILAGAQAKLPSERGILGIYFGYESSDKQVGQQRLDFDEKVYYG GLTYYNVFARKGVSEYYLSANTRIDKGDTDLYKTYRSGSTTIDSQVDSYGYGADLKVGAN YYNIYNNSVLSPEIGISYQGISTDSFRLRHLGGVSEHYYAQDVNFFDISASLRWQRAWNN VFKTMASLGAMYNVYNDAKGSGVIAGLKQSADINVEELYGTTQVGISYALGENANIALNY SGIFANGVQSHAGYIRLGVWW Prediction of potential genes in microbial genomes Time: Tue May 24 02:08:11 2011 Seq name: gi|197283034|gb|ABQU01000016.1| Helicobacter pullorum MIT 98-5489 cont2.16, whole genome shotgun sequence Length of sequence - 9109 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 4, operones - 4 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 193 - 972 808 ## COG1387 Histidinol phosphatase and related hydrolases of the PHP family 2 1 Op 2 . - CDS 976 - 1452 563 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism - Prom 1554 - 1613 7.9 + Prom 1489 - 1548 5.2 3 2 Op 1 12/0.000 + CDS 1586 - 2731 1252 ## COG0438 Glycosyltransferase 4 2 Op 2 . + CDS 2724 - 3335 726 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis - TRNA 3337 - 3412 46.7 # Glu TTC 0 0 + Prom 3451 - 3510 6.6 5 3 Op 1 . + CDS 3542 - 5707 1903 ## WS1305 hypothetical protein 6 3 Op 2 . + CDS 5711 - 6802 1133 ## COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis - Term 7018 - 7064 0.5 7 4 Op 1 . - CDS 7067 - 7912 1051 ## Cla_0124 conserved hypothetical protein, probable ATP/GTP-binding protein 8 4 Op 2 3/0.000 - CDS 7970 - 8866 543 ## COG2207 AraC-type DNA-binding domain-containing proteins - Term 8873 - 8912 3.7 9 4 Op 3 . - CDS 8915 - 9094 322 ## COG0840 Methyl-accepting chemotaxis protein Predicted protein(s) >gi|197283034|gb|ABQU01000016.1| GENE 1 193 - 972 808 259 aa, chain - ## HITS:1 COG:DR0470 KEGG:ns NR:ns ## COG: DR0470 COG1387 # Protein_GI_number: 15805497 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Histidinol phosphatase and related hydrolases of the PHP family # Organism: Deinococcus radiodurans # 4 256 6 258 260 165 36.0 6e-41 MRVDLHNHTYLCKHAVGSMEEYIQKAIEQKIDVFGFSCHNPMKFDKQFRMDFAELPFYFQ EIEKLKAKYASQITIKTALEIDFLPPYWEDRIFELPLDYRIGAVHFLGDWGFDNPEFIRE YAKRDINVCWEQYFDAITQMAKTGKFDIVAHLDLLKIFNHRPTKDLRKKLEETLRAIKKA NMAVEINAAGLRKEVKEQYPSKEILEMCYGMEIPITFGSDAHAKEQIGFEREYLETLAKE IGYDKCATYTLRDREMVRF >gi|197283034|gb|ABQU01000016.1| GENE 2 976 - 1452 563 158 aa, chain - ## HITS:1 COG:aq_2114_1 KEGG:ns NR:ns ## COG: aq_2114_1 COG2050 # Protein_GI_number: 15607066 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Aquifex aeolicus # 38 136 19 117 129 83 40.0 2e-16 MEEEFESEEGDFLSKADYDAVVQKVCQNIDPSNGIIKELKDGQANVLLETTSKMILDKTG LVHSGNLYSSAAYSALLAVNNPNAIIIGVEMKFLAPIELGNEVLFKAQSLQEDTKKREVK VEGFVLDIKIFDAMFYVAVFDKHVLNLHITKEMEKRMD >gi|197283034|gb|ABQU01000016.1| GENE 3 1586 - 2731 1252 381 aa, chain + ## HITS:1 COG:Cj1125c KEGG:ns NR:ns ## COG: Cj1125c COG0438 # Protein_GI_number: 15792450 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Campylobacter jejuni # 1 381 1 376 376 219 36.0 5e-57 MKILFLSHTDSNLYRFRLPVMIALVKEGHQVVALVPKGECFEKFSKHNIKAINYPIQRSS LNPLKALKTIQNIAEILKQEKPDIIHTFMLKPNIYGSFAAKIAGIPYVINSLTGLGSFYI QKSLKTTLLRILIEKLNFFAFKIAKKVLFQNQDDLNLYVQKGLVPREKTILIKGSGIDTA LFSPFSQDEIQQTRKNLKIPQDKIIVLMVARAILHKGIKEYYQAAKIITQQNPKILFLYI GGIDNGNIAPITQDFLESNPQVHYLGEKDNIKEWIGICDIFVLPSYREGIPRTLLEAGSM AKPIITTNAVGCKEVVEEGKNGFLVPIGESEILAQKILELSCNQALREQFGKNSQEKIRK EFSVETIVESYLKLYKEVKNV >gi|197283034|gb|ABQU01000016.1| GENE 4 2724 - 3335 726 203 aa, chain + ## HITS:1 COG:Cj1124c KEGG:ns NR:ns ## COG: Cj1124c COG2148 # Protein_GI_number: 15792449 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Campylobacter jejuni # 1 199 1 198 200 267 68.0 8e-72 MYKNLIKPILDFILAFLLIIIFSPIILIVALLIKLKLGSPILFTQERPGLNGKIFRIYKF RTMSDERDSKGDLLSDELRLKGFGKLIRKSSLDELPQLFNVLKGEMSFVGPRPLLVEYLK LYNQEQAKRHNVKPGITGWAQVNGRNAISWEEKFKLDVYYVEHISFMLDCKILYMTFFKV LKRKDINSNTNITMEKFTGNKSE >gi|197283034|gb|ABQU01000016.1| GENE 5 3542 - 5707 1903 721 aa, chain + ## HITS:1 COG:no KEGG:WS1305 NR:ns ## KEGG: WS1305 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 706 1 707 713 545 42.0 1e-153 MFPLQNKLRLIGSVLGVATNQNSIICADNFYNISTFSLSTKTIDKALQVAKEAEPLHPFS KSVAIGNVSGKVATGFATTPKGIVLKTEPQIAPISLLTWQKLEISKIAFSQDDNYLATGG EDGRVLVYTGDNYHLLLSLPPFPDYISSIVFSDDGTLIFSACFGKSAMIFDILKNTKIVD FKTDFVVEDAFFYDEDTKLFCATKNGTFTYDIRKQEFISKNTLQNSWLTVCKKLPGEKFA IIGGKYNPLRIIKISDHSVVDVIPSEQIGATSLFLDKNTLYAGYCSGYIEIIQIDKDKDE MLEFIAQNDLKSCLKLIQEKNLFLQILPQYIQKLDSLWKENLLQAIDLLAKDKLQEARNL VESFMHDPKKKEEFNYYWLQKESVAHFMDLIEAKNYAEAYNLIKQYPYLKDTIAYAQLEE LWEKSFELAKRLLAQDAQHNLNQAQELLKPFSNVKGKKDSITMLLRNVDKFLQADKEFKA KNFIEYFKLCEKFPFLQETRIYKNALLIGNQLSQNIASLENKGDYNKALEICKLLSAMFP FKNIATEKSKTIQLKQEFIQYCTTQKLSKAFEMAESHFELHSLPEYKKLYEDFKIQGRSA FVFASKGDGKGTLDTLKNYLHIDCWKDKVASILKIAYLTEFIQNANQDSKNINWKETFQY YIERYSKDEEIKKVAAEMGISDILNSIPFDGNPKGYLNAVIADSLLCIDNQPLHEYQTTK G >gi|197283034|gb|ABQU01000016.1| GENE 6 5711 - 6802 1133 363 aa, chain + ## HITS:1 COG:HP0625 KEGG:ns NR:ns ## COG: HP0625 COG0821 # Protein_GI_number: 15645249 # Func_class: I Lipid transport and metabolism # Function: Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis # Organism: Helicobacter pylori 26695 # 4 358 2 356 359 491 71.0 1e-139 MQTLKKPYPTKQIQVGEVKIGGGAPISVQSMTFSKTANLQATKEQIDRLQLAGCDIVRVA VSDEEDANALKQLKNMISLPLVADIHFRYKLALIAAQWVDCIRINPGNIGSKEKIKAVVE ACQERNIPIRIGVNAGSLEKQFEEKYGATPKGMVESALYNIKLLEDFGFSNLKVSLKASD VERTMAAYRMLRPLVEYPFHLGVTEAGDLESSMIKSSMALGGLLMEGIGDTMRVSITGEL EKEVEVARSILRYSGRQKEGITYISCPTCGRLQADLVPILKELKERMPKIKTPMQLSVMG CAVNALGEAKHADVAIAFGSGDGLIIKKGEIVGKYKESELIEVFIKEVLNTEQEMIKSQA KGE >gi|197283034|gb|ABQU01000016.1| GENE 7 7067 - 7912 1051 281 aa, chain - ## HITS:1 COG:no KEGG:Cla_0124 NR:ns ## KEGG: Cla_0124 # Name: not_defined # Def: conserved hypothetical protein, probable ATP/GTP-binding protein # Organism: C.lari # Pathway: not_defined # 2 280 1 278 278 290 57.0 3e-77 MLKKFLGSIALASILSIGANAQEIGGFSHPESVFILGDDVFVGNVGEKLEPLSKDNDGFI SKLDKNGNLVELKFLQNLHAPKGMNTINGILYVVDIDVLKGFDLKSKKEVFNLPIKNAIF LNDIVVLNGDLLVSDTGTGIIHRVDVKTASYETFVKLDSAFGGPNGLLLDKDNNRLIAVG YDPNGKAKGSIVSIDLKSKKQVALSKPLGALDGVVFAKNGDLLVSDWGENLKGVVYQMDK KGNIKVLDLPAMKGPADMASDGKNLWIPRMAEGKILKVNLP >gi|197283034|gb|ABQU01000016.1| GENE 8 7970 - 8866 543 298 aa, chain - ## HITS:1 COG:Cj1042c KEGG:ns NR:ns ## COG: Cj1042c COG2207 # Protein_GI_number: 15792369 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Campylobacter jejuni # 25 296 25 296 296 220 46.0 3e-57 MGNFTYFPDFLKNSPNSILFTAPHCAFSRFVQKPPIPRDSMVYLKMHCLVIVLKGEKIIH THNKQHKIKAKEGFFLKSGNYLFSNIAPKDESYEAILIFFDNAEIIRFIHKYREKLPLEY SCEGLEFFCLRENLMLSLIASSFEYYLQQSPNVPLSLVSHKFEELFLFLLSEYKEAFVGF LKGIIQEFSFELNMIFDYCNTDFQSVSQMAEFAHMDNATFSRKFKQTFFISPKSWLDEKR FNKAKFYLEYSNKNINQICQECGFSSSWFIERFKKKYQLTPKQYQKSKNLYFLSKNTH >gi|197283034|gb|ABQU01000016.1| GENE 9 8915 - 9094 322 59 aa, chain - ## HITS:1 COG:Cj1506c KEGG:ns NR:ns ## COG: Cj1506c COG0840 # Protein_GI_number: 15792820 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Campylobacter jejuni # 1 59 642 700 700 66 67.0 9e-12 MSESIKEQTAGVTQINEAIAQLESVTQDNVSVANNTNDISQSVNKIADDILADVNKKKF Prediction of potential genes in microbial genomes Time: Tue May 24 02:08:31 2011 Seq name: gi|197283033|gb|ABQU01000017.1| Helicobacter pullorum MIT 98-5489 cont2.17, whole genome shotgun sequence Length of sequence - 24177 bp Number of predicted genes - 24, with homology - 23 Number of transcription units - 7, operones - 4 average op.length - 5.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 1394 1383 ## COG0840 Methyl-accepting chemotaxis protein 2 1 Op 2 . - CDS 1449 - 2393 839 ## COG0181 Porphobilinogen deaminase 3 1 Op 3 . - CDS 2395 - 2799 455 ## WS1579 hypothetical protein 4 1 Op 4 3/0.000 - CDS 2853 - 4589 1560 ## COG0442 Prolyl-tRNA synthetase 5 1 Op 5 3/0.000 - CDS 4592 - 5923 1042 ## COG0373 Glutamyl-tRNA reductase 6 1 Op 6 . - CDS 5932 - 6852 723 ## COG0142 Geranylgeranyl pyrophosphate synthase 7 1 Op 7 . - CDS 6830 - 7246 223 ## WS1583 hypothetical protein 8 1 Op 8 . - CDS 7259 - 7525 364 ## gi|242309905|ref|ZP_04809060.1| predicted protein 9 1 Op 9 . - CDS 7529 - 8836 1544 ## COG0141 Histidinol dehydrogenase 10 1 Op 10 . - CDS 8862 - 10883 1583 ## WS1946 hypothetical protein - Prom 10936 - 10995 13.9 11 2 Op 1 . - CDS 11003 - 11551 378 ## COG3150 Predicted esterase - Prom 11571 - 11630 2.0 12 2 Op 2 . - CDS 11632 - 12126 760 ## COG2077 Peroxiredoxin - Prom 12157 - 12216 11.5 - Term 12559 - 12603 -0.1 13 3 Op 1 . - CDS 12611 - 14476 1857 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 14 3 Op 2 3/0.000 - CDS 14541 - 15284 697 ## COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase 15 3 Op 3 1/0.000 - CDS 15277 - 15867 444 ## COG0529 Adenylylsulfate kinase and related kinases 16 3 Op 4 . - CDS 15876 - 17588 1414 ## COG0471 Di- and tricarboxylate transporters 17 3 Op 5 18/0.000 - CDS 17585 - 19009 1469 ## COG2895 GTPases - Sulfate adenylate transferase subunit 1 18 3 Op 6 . - CDS 19009 - 19914 829 ## COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes - Prom 19950 - 20009 5.0 19 4 Tu 1 . - CDS 20016 - 20129 60 ## - Prom 20339 - 20398 9.3 + Prom 20284 - 20343 7.1 20 5 Tu 1 . + CDS 20369 - 21418 1304 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D + Prom 21534 - 21593 6.4 21 6 Op 1 . + CDS 21684 - 22241 503 ## gi|242309917|ref|ZP_04809072.1| predicted protein 22 6 Op 2 1/0.000 + CDS 22228 - 22935 805 ## COG2849 Uncharacterized protein conserved in bacteria 23 6 Op 3 . + CDS 22986 - 23882 903 ## COG2849 Uncharacterized protein conserved in bacteria 24 7 Tu 1 . - CDS 23939 - 24148 288 ## COG0240 Glycerol-3-phosphate dehydrogenase Predicted protein(s) >gi|197283033|gb|ABQU01000017.1| GENE 1 2 - 1394 1383 464 aa, chain - ## HITS:1 COG:Cj0144 KEGG:ns NR:ns ## COG: Cj0144 COG0840 # Protein_GI_number: 15791532 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Campylobacter jejuni # 1 464 1 459 659 210 31.0 6e-54 MKSLALKISGLIIVAFVVMMSVSIFFNYRGTAENTNKLFSTIQESILEASYTTINITMNI EAKQHLEFIGNAISRLDKNDIVAQREVMSHIVEAVKYPDIFIVYEEDGSYLDESYQKEPK VNFSAVWDTPQMDMRTRPWYQAAKKANGFVVSDAYISQVGSLKGKQVATVSMPFYKNGKM AGVIGADIVIGNFQERFKNFSTEVFPSLSVFIMDKQGEIISHKQAELVLDNKKIASEVAV SNMASKQPIGIASYQNVKGAESVAHYRVMPFGWIMVVSANVADYKAAVNAAAIRDSLINI ALLIVGVLVLFFIIKVFINPITSIQKGLEALFAYINHETQEAPKPIHITSNDEFGVMAKA INENVEKTKEGLQKDENTIKQAAQTAQKVENGDLTTRILENPHNPQLVELREVLNKMLDA LQSRVGSNMNIIHDVFESYKMLDFTKQIPNASGNVEVTTNILGE >gi|197283033|gb|ABQU01000017.1| GENE 2 1449 - 2393 839 314 aa, chain - ## HITS:1 COG:jhp0222 KEGG:ns NR:ns ## COG: jhp0222 COG0181 # Protein_GI_number: 15611292 # Func_class: H Coenzyme transport and metabolism # Function: Porphobilinogen deaminase # Organism: Helicobacter pylori J99 # 1 307 1 304 306 298 55.0 1e-80 MKKIIIGTRGSVLALWQANFVKRALEEQYSNLEVELKIVKTKGDKILDVPLAKIGGKGLF TKELEELMLKGEIDIAVHSLKDVPVEFVENLGLAAITKREDVRDSFLSFKYKSLEELPSG AKVGTTSLRRVMQIHTLRKDLDCISLRGNVQTRLKRLKEGDFDAIILAQAGVNRLGIENE IPYIIPLDFMIPAMGQAALGIECRMDSKVVEMLDFLNDKKACFETSAEREFVRTLEGGCQ VPIGVNANLENNLLSIKAVLGIPDGTKCLRDSKEVQVQGVEECRQIGRKLALEMIDKGAR EILQEAQQWEFNKN >gi|197283033|gb|ABQU01000017.1| GENE 3 2395 - 2799 455 134 aa, chain - ## HITS:1 COG:no KEGG:WS1579 NR:ns ## KEGG: WS1579 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: Valine, leucine and isoleucine biosynthesis [PATH:wsu00290]; Pyruvate metabolism [PATH:wsu00620]; Metabolic pathways [PATH:wsu01100]; Biosynthesis of secondary metabolites [PATH:wsu01110] # 1 133 1 136 141 86 40.0 3e-16 MPLVLLIVYLIIEVFVSYEVIDLIGVLGFVLEIILTAFLGFGILVNFRLFFAEALERLRS REITYEAFVGSNIFRILGAFLLILPGAFTDILGILMQFSSFGFVLIKPFVKSKFTKNTHN EVIDVEVVEKEIKD >gi|197283033|gb|ABQU01000017.1| GENE 4 2853 - 4589 1560 578 aa, chain - ## HITS:1 COG:Cj0543 KEGG:ns NR:ns ## COG: Cj0543 COG0442 # Protein_GI_number: 15791904 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Campylobacter jejuni # 1 570 2 565 569 701 61.0 0 MRFSNFFIPTLKETPKDVVLKSHEYLLRGGFIQQIGSGIYNFLPLGKRVLDKISKIVKQE MDNAGANEVLLGCVTPASLWQASGRYERYGKELLRFKDRKENEFVFGPTHEETITELVKT YVKSYKQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHSSYEDLKREFDEMERT YSVIFSKLGLDFRAVEADSGAIGGSGSKEFMVLAESGEDTICVCDNCSYAANLEAANRLE KSTQTPPPQANFTKFHTPDVKTIESLAEFFKINSFWTIKAVVKKAIFEGGKSEFAFFFLR GCDFLNETKALNAISGANEIVDVNEDEIKNIGLFPGFIGPYALRNITQSPYIYFDKELEG ASNLICGANEKDYHFVGVDLNLFEGLEFKDLLEVQEGDICKKCQKGHLYFTKGIEVGHIF QLGEKYSQAMGATFLDENGKSKPFIMGCYGIGISRLLAAIIEQHYDEKGMKWTKATAPFL LDIVISNVKDCEQVELATRIYHALSEQKIECLLDDRNERYGAKMADFELIGMPYALIVGK GIQEGKVELVCRANLEKTMFEVNDFEGFLESLCAILKI >gi|197283033|gb|ABQU01000017.1| GENE 5 4592 - 5923 1042 443 aa, chain - ## HITS:1 COG:Cj0542 KEGG:ns NR:ns ## COG: Cj0542 COG0373 # Protein_GI_number: 15791903 # Func_class: H Coenzyme transport and metabolism # Function: Glutamyl-tRNA reductase # Organism: Campylobacter jejuni # 3 433 2 423 432 373 47.0 1e-103 MEYYILSYSHKNTDIALRERMALDTKNPQTKTFLLELVENKFIEEAVILSTCNRIEFILS VYNAQKAEEFLLAKLSDFCKIDIDTLKQRADSYENIAAIHHLFSVASSLDSLVVGETQIS GQLKNAFKYSYDLGCCSLEISRAIHFAFRCAASVRNSTSISQNSVSVASTAVAKAKEILG VLKEKEALVIGAGEMSSLCVKHLVNQQAKIVLINRDIKNAENLASEISKNHSGVQIRVES FGELGALINQIPLVFTATGAPHTIITQDMVESQKEKRYWFDLAVPRDIDKICDENICVFA VDDLQDIVNKNLALREEQAKIAYGIVGRHTQDFFAWLQTLNVEPLIKMIRQQAKEASLKE IQKGITKGYLPQEYEKNIEKTLHNAFNSFLHNLTINLKSIANTPKGDGVVESLRFLFEQN TEPFMVEKYKCEYSDDKIIALKE >gi|197283033|gb|ABQU01000017.1| GENE 6 5932 - 6852 723 306 aa, chain - ## HITS:1 COG:Cj0541 KEGG:ns NR:ns ## COG: Cj0541 COG0142 # Protein_GI_number: 15791902 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Campylobacter jejuni # 4 306 1 297 297 247 47.0 2e-65 MEALEQINQKIEDFLEELESPIVLELSSKIQRGKMLRSKLALNIATESEECILLCAIIEM IQSASLLHDDVIDNATMRRSKPSINAIAGDKNAIMLGDILYSKAFCELTQFQENFPMIPR IVANAVTTLAIGEMEDVELAKQFNANEAKYLTMVEHKTASLIESTAYAAAFLSGRNQEEA KSFRIYGRNLGIAFQIIDDVLDIVSSTQTLGKPALSDFKEGKTTLPYIYLYHSLNTIDKK RLENAFGKELEQKEQDWILENLKASGAIQKSIDLAKHLGEVGIEAISNHSCDKLIKIMQE MINRDF >gi|197283033|gb|ABQU01000017.1| GENE 7 6830 - 7246 223 138 aa, chain - ## HITS:1 COG:no KEGG:WS1583 NR:ns ## KEGG: WS1583 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 7 135 11 143 146 125 51.0 4e-28 MFCCISWLFAPIQWKANKTIELKKDEFYVIKLQANQAQKTLYFRWTLLKNEGLVVHLNYD SFPHQFVLYEDYQRNCYQINLWKAQERYYSQEPYFLLCFKDYKRVDKIATLNFYLYEGGR DFNIIDERKVPNGGFGTN >gi|197283033|gb|ABQU01000017.1| GENE 8 7259 - 7525 364 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309905|ref|ZP_04809060.1| ## NR: gi|242309905|ref|ZP_04809060.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 88 1 88 88 130 100.0 2e-29 MEHIFEGLPKDKWLEIIFNASNNLTSAELIRILERLAAMEILLEKRLGETWEEELQYLLK SEEVAEEIHRHTQNLAIESMGNILTQNE >gi|197283033|gb|ABQU01000017.1| GENE 9 7529 - 8836 1544 435 aa, chain - ## HITS:1 COG:BH3582 KEGG:ns NR:ns ## COG: BH3582 COG0141 # Protein_GI_number: 15616144 # Func_class: E Amino acid transport and metabolism # Function: Histidinol dehydrogenase # Organism: Bacillus halodurans # 31 432 24 423 424 398 49.0 1e-110 MIATFSTQDLDFKSRFGELLKRGAMDICNVEERVKNLLYEIKENGENAIVSHIAKFDLWN PKNLEELKITQDSMQQAYESLQKPLKDSLQKAYERIFAFHSKQKPKTWLDFEENGSILGQ KVNPVDRAGLYIPGGKAAYPSSLLMNAIPAIVAGVKEIAVCTPTPNNEVNELLLAAMYLC GIKEAYKVGGASAVGMMAYGCGSVKKVDVITGPGNIYVATAKKLVFGEVNIDMIAGPSEI GILATSQARVEYLAWDLLSQAEHDEMASSILITPCEKLAKEVALKIEECLQTLPRKEITA KSINERGAIIITKDINEAISLMNEIAPEHLELLVENPLEVLPKIKHAGAIFIGENTPEPI GDYIAGPNHTLPTGGSAKFFSPLGVEHFMKKSSIISFSKQGIIELGRECGILAHTEGLDA HRNSVLARLEDKNKE >gi|197283033|gb|ABQU01000017.1| GENE 10 8862 - 10883 1583 673 aa, chain - ## HITS:1 COG:no KEGG:WS1946 NR:ns ## KEGG: WS1946 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 666 1 661 666 337 33.0 6e-91 MEQSTLNLLGSYMPMAQRYKSQFSSLNTLLSKTTLTGKISSLDIAENLFDYMEQTQEKFE ELQEKLIKTIMEQNFLNVYEEAQTSSKVLSELLNAYLQSRYEEILALLRSDVLKNCMDNQ EEKTKEAQQAIFDYLKEFAKNSGAYKDVLLFDDKGNTLEALLPKVAPKTALAAILEAHKI ESFGDFFSKVDFYQQGALLEERMEFFFVLPLRKEAEQPANFVAVFVLDFQGIFEWLNNCF PYRLVQSNLVITNQKNVVLFSDNPKNFPVGSSLKTNTLEGYHFIEFRSKTCIFAQNEIGS LQTKNIVENWKVCRILPLYVAFDIKKQNNEKINPDILKDSLLITDELDAVIAEGENINEE LGDAVINGEIIASKSHSYTLNPILNNIRILSEEMNTLCIQSAEELQKGIYGALFNTIGYY SKYAVVAMDNFLRECVCEISWIKNAPEFRRYLLEGIQDKTSSNAKEKIKSLLACLGENLK NYYNIVFFDKDGNILHNSLEDAKYDNEKLNIIERLGNSVHNNGVMISNYEASPLYDGDST MIVYAGIKEGVRVIGGLAFVLDIKRVSSLINDIMPKGSPIISDKSEIFTVVFDSQKNILA TTNPEFTFEGYQLEDKIDFKNLKDFKKIIKIDQKYYLLCTEVCPNTKNGFAEYTKHSLYS LVLVALKEEMLEC >gi|197283033|gb|ABQU01000017.1| GENE 11 11003 - 11551 378 182 aa, chain - ## HITS:1 COG:VC2432 KEGG:ns NR:ns ## COG: VC2432 COG3150 # Protein_GI_number: 15642429 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Vibrio cholerae # 1 182 7 195 195 112 33.0 4e-25 MLLYLHGFRSIGLCYKGSLIAKFSPNALTPNLPYVPSLAMNLAQSLIEKHQKNHKICLIG SSLGGYYATFLAEKYHLKAVLVNPVVDAYKTLLPAIGKVDVSYNGESFLWTLDLVESLKQ YFVDLISPELYCVLLQKGDRVLDYRIAEQKFRDSKLVIQEGGSHHFDDFIQQKELILQWE KL >gi|197283033|gb|ABQU01000017.1| GENE 12 11632 - 12126 760 164 aa, chain - ## HITS:1 COG:Cj0779 KEGG:ns NR:ns ## COG: Cj0779 COG2077 # Protein_GI_number: 15792117 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Campylobacter jejuni # 1 155 3 155 175 162 60.0 2e-40 MVTFKGNAVSLKGKEINVGDSAPKVELIAGDLSAKSVGGASGKFQIINVVPSLDTGVCAT QTRKFNEKAASLSNAEVFVVSLDLPFAQGRFCSIEGIQNVVALSDFKNKAFGESYGVILA GSPLEGLLTRAVFVVNPEGKVVHKEIVSEVTNEPNYDAALAAIK >gi|197283033|gb|ABQU01000017.1| GENE 13 12611 - 14476 1857 621 aa, chain - ## HITS:1 COG:Cj1434c KEGG:ns NR:ns ## COG: Cj1434c COG0463 # Protein_GI_number: 15792752 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Campylobacter jejuni # 508 619 329 439 445 76 40.0 2e-13 MTAYVHIGTPKTGTTTIQTFMAKNNEALKQKGFLYSTSIIAGWQHWRLSSWVNTELVEKK NEQQQKFCQEIKDLIKQEIKANQDKTFVFSTESLTWDVNLNISAPVFMLQKLLKELGFDE VKIILYCRNQADLMVSADSENIKMYHGLCAAKDLPSHHIKTPIMFDFQNIIQKYMEVFGR DNLIVKLFDKNEFLEGDLIKDFLQNLGLKLDNSFVIPPSQNETLDLIGFELGERLNTHFK NRAERNLYGLEMFRCSPHFQSKDKELKFMPKKDHYKAWNDYFEESNEWVRKEFFPHKERL FPKKDLSNYKENYELKEMKPEYWDRIAAFIVDFAKNRKKIIDDKDKLITTLTQQKQQLEQ TNTDLQSQLSSKSQQLTQVKSQLTSKSQELESLKSQYDSKIKELQVNLKITQDSLSSLPI KKQTLEIKNLESDLKIKELKAKQIEKELGYSYNVLEELDLKKQELISVKQQLDSTKKQLE SKNTGLKSNLNYLIFKGNLSYLSTMTSAKDRIHNHLSYKLGKAMIENSKSILGYIRMPYV LSYIKEQHNKEQKQYQEQIKKNPNLKLPKLESYKDYKEALKEKECFTYKLGEALMKADKT WYKGGYVKLWFEAKRLEREIM >gi|197283033|gb|ABQU01000017.1| GENE 14 14541 - 15284 697 247 aa, chain - ## HITS:1 COG:aq_337 KEGG:ns NR:ns ## COG: aq_337 COG1218 # Protein_GI_number: 15605852 # Func_class: P Inorganic ion transport and metabolism # Function: 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase # Organism: Aquifex aeolicus # 17 245 12 249 268 245 52.0 5e-65 MLEKIDLDELRGIALDASRAVMEVYKRDFSVYEKEDKSPVSEADLLGNEIICKALAKFSL PILSEENKLVSFDERKKWDYFFCVDPLDGTKEFIKRNGEFTINIALIDRDTPIAGVVYAP ALDLMFSAKKGGGAFKNNEKLPLKIKRDSYKIVASKSHMSKETSDFIENLKVDKPKEFVS MGSSLKLCLVASGEADIYPRLAPTMEWDTAAADAIVREAGKMTYDFYTNKPLVYNKEDLR NPYFVVR >gi|197283033|gb|ABQU01000017.1| GENE 15 15277 - 15867 444 196 aa, chain - ## HITS:1 COG:BS_yisZ KEGG:ns NR:ns ## COG: BS_yisZ COG0529 # Protein_GI_number: 16078155 # Func_class: P Inorganic ion transport and metabolism # Function: Adenylylsulfate kinase and related kinases # Organism: Bacillus subtilis # 3 194 6 199 199 240 57.0 1e-63 MENVVWQEISISKTQRASIKGQKPCVLWFTGLSGSGKSTLANAIEKELFKRGFHTYLLDG DNVRHGLNKDLGFDRVSREENIRRIAEVCKLFVDSGLIVLSAFVSPFIQDRQNVRNLLWQ GEFIEIFMDTPLEVCEKRDIKGLYKKARNGEIKDFTGISSPYEKPLNAEIHIKDSNFEKN VELILKYLEKGGFLSA >gi|197283033|gb|ABQU01000017.1| GENE 16 15876 - 17588 1414 570 aa, chain - ## HITS:1 COG:BH3384 KEGG:ns NR:ns ## COG: BH3384 COG0471 # Protein_GI_number: 15615946 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Bacillus halodurans # 9 563 13 582 589 285 35.0 1e-76 MKIFVALSILGLLFLLIQNKYRPSLLFAIVASLYYLLGFLNLNELLIGFTNNALMTLVLL LLVSIAVEKTLIIDYCSKLIITQNYLFSLLKLGVITTATSAFLNNTAVVAAFMGMIKNNV YHLPSKLLIPLSYFAIVGGTITLVGTSTNLVVNSFVIESGLPSLQMFDFLLVGVCISIAV IIVMILISRWLPKHQNNIKKIDNYLIRIKVLPNSKLIGKSIQENGLRNLENLFLLEIERG MQIIAPASHSEIILGGDILIFSGDISQIDKIKKFDGLVVEFGDDFKELNLVDVVVTAQSN LIGKTIKEAGFRTKFDAAIVCFQRGAENIKKIGQEVVCAGDRLILAVGNDFKNRDNLSKN FYILSNIEKDSRFGKFKSLWVVCGFILLIIGSAMGFFSLLKGLLVFLAVLLLFRAVSFEE IRRRFPIDIFIIIGASLAITKALVGSGLAQDLASFIIGTFGEFGIYGSFIGVYLLTLILT EIITNNAAAALAFPIAYSTAVALEVNPIPFIFAVAYGASCGFMMPFGYQTHLMVSSIGGY KLTDFVKVGWAISLTYSLVVILLVPLVFKF >gi|197283033|gb|ABQU01000017.1| GENE 17 17585 - 19009 1469 474 aa, chain - ## HITS:1 COG:CC1482_1 KEGG:ns NR:ns ## COG: CC1482_1 COG2895 # Protein_GI_number: 16125729 # Func_class: P Inorganic ion transport and metabolism # Function: GTPases - Sulfate adenylate transferase subunit 1 # Organism: Caulobacter vibrioides # 1 438 8 430 430 448 52.0 1e-125 MMESVEKYLKEYENKELCRFITCGSVDDGKSTLIGRMLYDSKMLFEDQLSTLQKDSKRLG TQGNNLDFALLVDGLASEREQGITIDVAYRFFSSEKRKFIIADTPGHEQYTRNMATGAST ADIAIILVDATKGILTQTKRHSYIASLLGIKQFIIAINKMDLVGFKEEVYNQICKDYETI LPYLSNFEDIQVHFVPICAINGDNITTKSTDMIWYKDKTLMEYLDTLPIFVQNNDYFIMC VQYVNRPHLNFRGFCGNIVSGSVKKGDEIVVLPSLKQSRVKEIISTDIKHLRALTQDEKI EGVQETFCPNAITLALEDEIDISRGDVIASKNNDIEMGNSFEAMLIWMSEIKLNLNENYL IKIGNLLTNLQINRICCKKNINTFEEIQADTLELNDIAKCVLRLNKKIPLKKYKDNKTLG SFIVIDKYSNQTIGAGMIFNIFQNDTQEQIYTSAEKELNAYIRRNYPEWGCKEI >gi|197283033|gb|ABQU01000017.1| GENE 18 19009 - 19914 829 301 aa, chain - ## HITS:1 COG:PA4443 KEGG:ns NR:ns ## COG: PA4443 COG0175 # Protein_GI_number: 15599639 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes # Organism: Pseudomonas aeruginosa # 1 301 1 305 305 410 64.0 1e-114 MARIFTHLQQLEAESIYIMREVVAEFEKPAMLYSIGKDSSVMLHLLQKAFYPAIPPIPLV HVDTTWKFKEMIEFRDRRAKELGMELIVYQNPKIQELNLSPFIHGSSMHTDIAKTQGLKQ MLDIYKFDAVFGGARRDEEKSRAKERIYSFRDENHTWDPKNQRPELWNLYNGRHKKGESI RVFPLSNWTELDVWQYIYKENIPIPSLYFAKKRPVVEYMGTKILVDDERMPKELAQKAKE ELVRFRTLGCYPLTGAINSSASNVLEIIKELILAKTSERQGRLIDSDEEASMEKKKKEGY F >gi|197283033|gb|ABQU01000017.1| GENE 19 20016 - 20129 60 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MMKNKKVYLCSFEDTGLGISLDSKKRICSMGEGGGGA >gi|197283033|gb|ABQU01000017.1| GENE 20 20369 - 21418 1304 349 aa, chain + ## HITS:1 COG:Cj0029 KEGG:ns NR:ns ## COG: Cj0029 COG0252 # Protein_GI_number: 15791428 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Campylobacter jejuni # 20 349 4 331 331 394 66.0 1e-109 MKKILLGVLFMLGISIAAFAKPNIVILATGGTIAGEAKSDLATTGYKAGSVSVDVLIKAV PELQNIANIQAEQIANIDSSNMTDEIWLKLAKRINTLLKDSKVDGIVITHGTDTMEETAY FLNLVIKSDKPVVLTGAMRPATAISADGPKNLYNAVSLAGDKNAKGKGVMIAMNDKIHAA REVTKTHTLNVETFKSPNSGEIGYIIDGKVFFDTASIKPNTLKAPFSIENLDSLPKVDIV YTYSNDGSKVAVEAFLKAGSKGLVVAGSGAGSIHENQKNYLIELLKDKKLAVVKSSRVGS GIVPLSDEEITQGFISANNLNPQKARVLLMLALTKTSDPQKIAQYFEEF >gi|197283033|gb|ABQU01000017.1| GENE 21 21684 - 22241 503 185 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309917|ref|ZP_04809072.1| ## NR: gi|242309917|ref|ZP_04809072.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 185 1 185 185 343 100.0 3e-93 MNDSKLLVSRFNHKGDIFELRIKYPPTNSCNWTHELSLYSREHSAPDNAGLSKKPIDFDS TTNPINITCKDNQNITLEASFTKEANQKYFDKITLKFNNITLINEHYPSCHLKKAETYKQ GNLLVSREYDDSDSGDAFQNGKLINEKFFNELKNGIETQYDNGIPIRTIYYENGIEVRRL PDDRN >gi|197283033|gb|ABQU01000017.1| GENE 22 22228 - 22935 805 235 aa, chain + ## HITS:1 COG:FN2118 KEGG:ns NR:ns ## COG: FN2118 COG2849 # Protein_GI_number: 19705408 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Fusobacterium nucleatum # 49 227 67 243 245 117 39.0 2e-26 MIEIKLLIKKYFKHFLVLAGLCLAIWVYIYFVHGYTKYRYYDNGQIRTEIPYKGGKQHGV KKWYNEDGQISVEIHYVNDKIHGVEKRYYENGQISLEQFYVNGEIQGIQKSYYENGQIRR EMPYKNANGKTYGVEKWYYENGQLESEIPYGNDEIHGVKKTYYESGELRSMTPFVNGKIH GTKKIYYENGNVMAEITLENDIPNGFEKWYDKRGNLQAKIKWVNGTQKQGWIYGR >gi|197283033|gb|ABQU01000017.1| GENE 23 22986 - 23882 903 298 aa, chain + ## HITS:1 COG:FN2119 KEGG:ns NR:ns ## COG: FN2119 COG2849 # Protein_GI_number: 19705409 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Fusobacterium nucleatum # 41 262 54 275 338 137 41.0 2e-32 MMEIKLLIKKYFKHFLVLAGLCLVIWVYIYSVHGYTKYRYYDNGQIRTVIPYKGGKQHGA KKSYDENGLLESETPYVNGEIHGIKKGYYKNRLAFETPYVNDKKHGVGKSYYENGRLHYE TPYVNDEIHGIEKEYDENGWLHYETTYVNGKKHGVQKVYDENGKLQEERTYINDERQGSW VEKVYDKNGRLQYETPYVNDKIHGIEKWYYENGQLESEIPYVNGKKHGVQKWYYENGKLK WKKPYKEDRRYGYGGYYDDKGKPVMPFYKPSSTKFDRYHFRTDLSRIFVAGYIWGENL >gi|197283033|gb|ABQU01000017.1| GENE 24 23939 - 24148 288 69 aa, chain - ## HITS:1 COG:HP0961 KEGG:ns NR:ns ## COG: HP0961 COG0240 # Protein_GI_number: 15645577 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Helicobacter pylori 26695 # 1 67 245 311 312 73 58.0 7e-14 MGLGLAQNKALDEILESLGEVAEGVETSKEIYALAQKNDIYTPIAKEVALIMGGKNPKES LLDLMKRIG Prediction of potential genes in microbial genomes Time: Tue May 24 02:09:07 2011 Seq name: gi|197283032|gb|ABQU01000018.1| Helicobacter pullorum MIT 98-5489 cont2.18, whole genome shotgun sequence Length of sequence - 19079 bp Number of predicted genes - 20, with homology - 20 Number of transcription units - 4, operones - 2 average op.length - 9.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 652 753 ## COG0240 Glycerol-3-phosphate dehydrogenase - Prom 690 - 749 11.0 + Prom 621 - 680 5.2 2 2 Tu 1 . + CDS 762 - 2060 1390 ## COG1157 Flagellar biosynthesis/type III secretory pathway ATPase + Term 2115 - 2158 -0.3 + Prom 2077 - 2136 6.5 3 3 Op 1 . + CDS 2166 - 2483 170 ## PROTEIN SUPPORTED gi|124485582|ref|YP_001030198.1| ribosomal protein L12E/L44/L45/RPP1/RPP2-like protein 4 3 Op 2 . + CDS 2514 - 2984 302 ## gi|242309922|ref|ZP_04809077.1| predicted protein 5 3 Op 3 . + CDS 2987 - 3925 566 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 6 3 Op 4 1/0.000 + CDS 3945 - 4715 950 ## COG0289 Dihydrodipicolinate reductase 7 3 Op 5 . + CDS 4720 - 6090 1279 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 8 3 Op 6 . + CDS 6108 - 7061 786 ## COG1242 Predicted Fe-S oxidoreductase 9 3 Op 7 . + CDS 7071 - 7640 456 ## COG1335 Amidases related to nicotinamidase 10 3 Op 8 19/0.000 + CDS 7719 - 8024 445 ## COG2127 Uncharacterized conserved protein 11 3 Op 9 . + CDS 8036 - 10249 1300 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 12 3 Op 10 . + CDS 10246 - 11004 557 ## COG2607 Predicted ATPase (AAA+ superfamily) 13 3 Op 11 . + CDS 11014 - 11841 894 ## COG1210 UDP-glucose pyrophosphorylase 14 3 Op 12 . + CDS 11841 - 12290 570 ## WS0341 hypothetical protein 15 3 Op 13 . + CDS 12310 - 13779 953 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 16 3 Op 14 . + CDS 13824 - 15092 1591 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 17 3 Op 15 . + CDS 15089 - 16024 682 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 18 3 Op 16 . + CDS 16036 - 16569 750 ## Abu_1319 hypothetical protein - TRNA 16574 - 16650 81.5 # Met CAT 0 0 - TRNA 16686 - 16760 69.9 # Gln TTG 0 0 + Prom 16979 - 17038 7.5 19 4 Op 1 . + CDS 17068 - 18099 984 ## COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase 20 4 Op 2 . + CDS 18165 - 19077 617 ## COG0276 Protoheme ferro-lyase (ferrochelatase) Predicted protein(s) >gi|197283032|gb|ABQU01000018.1| GENE 1 1 - 652 753 217 aa, chain - ## HITS:1 COG:HP0961 KEGG:ns NR:ns ## COG: HP0961 COG0240 # Protein_GI_number: 15645577 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Helicobacter pylori 26695 # 3 217 2 234 312 239 54.0 3e-63 MAKVSVFGGGAWGRALCFAFGEKNQAGIISRRNLDCAYQISLQEAQDSDFFVVAICSSAL EEWLKDCPIPQDSKVLVASKGVAKGLFVSEIFEKFYPKATLSFLAGPSFAKEVAQSLPCA LNVHSNKLENAQEWLGLFPSFIKPYANCDVMGGEIGGAYKNVIAIASGICEGMGLGNNAR ASLVARGLVEMTRFGKFFGAEEETFLGLSGAGDLFLT >gi|197283032|gb|ABQU01000018.1| GENE 2 762 - 2060 1390 432 aa, chain + ## HITS:1 COG:HP1420 KEGG:ns NR:ns ## COG: HP1420 COG1157 # Protein_GI_number: 15646029 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway ATPase # Organism: Helicobacter pylori 26695 # 1 432 1 434 434 577 67.0 1e-164 MSLTNLRERLNGLNLSPVFGLVTKVEQGFLSANGLSPRIGDIVRITNENGNSMGMVTTLE ANSFKITPFSFVEGTKVGDKVYLNTKGLQIPVGLELLGRVINPLGEPIDGKGELRAEGLM PIIRQPIAAMKRGMIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVRGAQ AKIKVIALIGERGREVPEFVEKNLGGDLTNTVLVVATSDDSPLMRKYGAFAAMSVAEYFK AKGEDVLFMMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLTLLPQLMERAGKEEGKGSI TAYFTVLVEGDDMSDPIADQSRSILDGHIVLDRSLTDFGIYPPINILNSASRLMGDVAQK EHILAARKFRRLYSMLKENEVLIRIGAYQAGSDKEIDEAIAKKSDMEDYLRQNYDESWDY TKSVNRLIELMQ >gi|197283032|gb|ABQU01000018.1| GENE 3 2166 - 2483 170 105 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|124485582|ref|YP_001030198.1| ribosomal protein L12E/L44/L45/RPP1/RPP2-like protein [Methanocorpusculum labreanum Z] # 5 104 18 117 120 70 32 1e-11 MAGYIELTEANFDETIKDGVVMVDFWAPWCGPCRMIAPVIDKLAGEYAGKAKICKVNTDE QQELASKFGIRSIPTIFFYKNGEKVDEMIGAATEAAFKDKIDKLL >gi|197283032|gb|ABQU01000018.1| GENE 4 2514 - 2984 302 156 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309922|ref|ZP_04809077.1| ## NR: gi|242309922|ref|ZP_04809077.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 156 1 156 156 301 100.0 8e-81 MKKCCPGFPIAFMIVFIIGAFLYYFYSFKSIAEIDFSKDVFYQTKGGEISLFEPKATKYQ LCFYSSYIPKWEETLALKQNIPLLALDIYQQGEIQKHSVFNLKVSSEILLRLIHNFNLRG LPKCFIIAQDKENSMVYRYLRDDGIYKVLNFNKLGE >gi|197283032|gb|ABQU01000018.1| GENE 5 2987 - 3925 566 312 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 1 310 1 305 306 222 39 1e-57 MIDLAIIGGGPAGLSAGLYATRGGLKNVIMFEKGMPGGQITSSSEMENYPGVAEVKSGFD FMMPWQEQCFRFGLKHEMKEVLRVKKTGDCFNIIFTDGSQEEAKAVIVATGGSPKRSGVK GEDTYWGKGVSSCATCDGFFYKNKEVAVLGGGDTAVEESIYLAKICSKVTLIHRRNEFRA SPITLQRAKNEPKIEFLTPYGIDEIYGDNSGVTGLKLKNLQDSSTKEINIDGIFVLIGYN VNNSVLIQEDGTALCDINESGQAIVNLKMETSIPGLFAAGDLRKDAPKQVVCAAADGATA ALAAIEFIEHHK >gi|197283032|gb|ABQU01000018.1| GENE 6 3945 - 4715 950 256 aa, chain + ## HITS:1 COG:Cj0197c KEGG:ns NR:ns ## COG: Cj0197c COG0289 # Protein_GI_number: 15791584 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Campylobacter jejuni # 1 255 1 242 242 254 51.0 1e-67 MLKIGVFGAGGRVGKLIVDLAKNSNEIKLESVYARRELDFSIEPGTLITSDLKVFLESCE VIIDFTTAQGTQQLLEVALQYPKPIVIGTTGLESHHENLIKEAAKKMPILYASNMSLGIA ILNKAIKLVASTLRDFDIEIVETHHHFKKDSPSGTALKLAKSCAEARNLDLDKVRISGRN GNIGARSKDEIGVMALRGGDVAGIHNVGFYGEGEYLEFIHTTTSRVTFAQGAIKAALWLK NQPSGLYSIEDSLNIG >gi|197283032|gb|ABQU01000018.1| GENE 7 4720 - 6090 1279 456 aa, chain + ## HITS:1 COG:Cj0196c KEGG:ns NR:ns ## COG: Cj0196c COG0034 # Protein_GI_number: 15791583 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Campylobacter jejuni # 10 456 2 445 445 515 57.0 1e-146 MENRNWNEECAVVGVYNAPNAASIAYYSLFSMQHRGQEATGIASSNGEKITAIKDHGLVT DVFCDETLKKLKGFSAVGHNRYATAGEDSLSDAQPIFARYDLGEIAIVHNGNLTNAEKIR NELIKEGAIFQSHMDTENLIHLIAKSKHENLAERIKEAVLKVEGAFCFIILSRKKMFVIR DRNGFRPLSLGKIKNNDGSIGYIVASETCAFDLVGAEYIRDVEAGEMLILSEKGIESHHI MPKNPYPCVFEYVYFARPDSHVFGRLVYSIRKAMGVELAKENPIDADLVIPVPDSGVAAA LGYSQQSGIPFELGIIRNHYVGRTFIEPTQQIRELKVKLKLNPIKELIENKRIIVIDDSV VRGTTSKQIIKILRDCGAKEIHMKISSPPTISPCYYGVDTPSKEELISAKMSNKEVCEFI QADSLSFLSLEGLKRSIGIENYQFCQACFDGNYIVK >gi|197283032|gb|ABQU01000018.1| GENE 8 6108 - 7061 786 317 aa, chain + ## HITS:1 COG:L142355 KEGG:ns NR:ns ## COG: L142355 COG1242 # Protein_GI_number: 15674248 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductase # Organism: Lactococcus lactis # 3 299 7 282 313 220 39.0 3e-57 MLTFGRYCKRRFGERVRKVPIALAGFTCPNIDGTVAKGGCIFCKNESFSPTLEHEPKAPL KVNPNMQENPLLPMQLKQLHSQYQWQTDFHKNKFGVGKYMIYFQSFTNTYAPFSTLQKLY TEALNLPNVVGMSIGTRTDSVNLELLDYLAELQKIKGQEIWIEYGIQSVYDETLKLINRG HGTEEMEYWISQTKQRGLKVCSHIIYGLPNETKEMMLHSLNKVLEWGSDGIKVHPLYIIE KTILALMHKKGEYKPIPLNDYIELIVESLKIIPQNVVIHRVSAGVRNDTLIAPKWCFDKN IQMRAIRDALRDAGIEY >gi|197283032|gb|ABQU01000018.1| GENE 9 7071 - 7640 456 189 aa, chain + ## HITS:1 COG:AF2335 KEGG:ns NR:ns ## COG: AF2335 COG1335 # Protein_GI_number: 11499916 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Archaeoglobus fulgidus # 19 189 3 170 170 83 30.0 2e-16 MPSYIPKQQARLNPKECVFICVDIQEKLFNVMQNKDKMLKNANKLLEGAKIFGANSIVLE QYPQGLGKALLRNQENPKESLIEKISFSAFGEQNFCKALEKSQATTLILFGIETHICVKE SAFDAKEKGFKVLIAEDACSSRELHSHSLAIQEMRDLKIQISSTESILFSFLLHAKETNF KAISTLIKN >gi|197283032|gb|ABQU01000018.1| GENE 10 7719 - 8024 445 101 aa, chain + ## HITS:1 COG:BMEI0815 KEGG:ns NR:ns ## COG: BMEI0815 COG2127 # Protein_GI_number: 17987098 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Brucella melitensis # 11 100 46 135 136 91 44.0 3e-19 MPKQAQLENTTETLEKTTEPIRYKVILLNDDYTTQDFVIEVLQKVFHKDFEASLNLMLQI HHNGRGMCGIYPYDIAETKALEVRKMAKAKQFPLRAILEKL >gi|197283032|gb|ABQU01000018.1| GENE 11 8036 - 10249 1300 737 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 11 714 13 798 815 505 38 1e-142 MIEISKELNYVLQNAQNRAKHLGHEYLTLEHIFQSLLENSTIIKALQECGGNIQTIKSQI ERYLLHFLQPYSNSNETPMETLAVTRVIEIMISHVKGSQRKEAQVGDLLAAILEEDKAFC TQVLKAQGITRLNILEYITENIQSLQTPKNKNENQQESILEKYCINLTKEAKEGRIDPII GRDAEIERCLEVLLRRKKNNPLLVGEPGVGKTAIAEGLALKIIQKDNPLLGNEIFALNIG ALVAGTKYRGDFEKRIKALSDEMLERKNAILFIDEIHTLIGAGATSGGSMDASNLLKPML ASGKFKCIGASTYAEYRNFLDKDKAFSRRFAKIDVDEPSQEETILILQGLKKYYEKHHNV IYPLESIKLAVELSSRYLHDRFLPDKAIDVIDEVGAAYKLAGKKGKISLASIKQMVAKMA KIPEIEATKNDKSLLKNLQKHLQSRIFGQDLAITEIVTALKRNKAGLNAPNKPIGSFLFS GPSGVGKTELAKEIAKALGINFERIDMSEYMEKYSISGLIGAPAGYVGYDKGGILTEMIK KNPHTLLLLDEIEKAHPDVLNLFLQVMDNAKLTDNNGESADFSSVILIMTSNVGSKEAPT LGFTQDSNSKFQSAIKDSFSPEFRNRLDAIIAFNPLNKQEILKIVDKNIQDLNQQIANKN IEVILDKTAKEYLAQIGFNQELGARPLALKIQEKIKNTLSDLMLFGELQKGGKITFSHSN KSDTLQYKISPNKEMKK >gi|197283032|gb|ABQU01000018.1| GENE 12 10246 - 11004 557 252 aa, chain + ## HITS:1 COG:NMA1415 KEGG:ns NR:ns ## COG: NMA1415 COG2607 # Protein_GI_number: 15794327 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Neisseria meningitidis Z2491 # 6 240 30 273 287 181 40.0 2e-45 MKSFSWDCIKYPAAIYRSSGYLHEISEIEENSFESLHNLQKEIKLLCANTEAFLFENLGV NVLLWGARGCGKSSLIKALLPKYAKDGLRILQIFKQDLEILPEIFDFLRTKPYKFIIFCD DLSFDEGDKEYKALKTILEGSIESFPQNIRIYTTSNRRHLMPEFHDENELFGFEGNEDKI ALFDRFPLCIGFYTYGNQEYLEILENYFKESPQEWEKLKAKAIWFATQRGSKNPRVAAQF FKLYKSGLIDLI >gi|197283032|gb|ABQU01000018.1| GENE 13 11014 - 11841 894 275 aa, chain + ## HITS:1 COG:PA2023 KEGG:ns NR:ns ## COG: PA2023 COG1210 # Protein_GI_number: 15597219 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Pseudomonas aeruginosa # 1 272 1 272 279 405 70.0 1e-113 MIKKCLFPAAGYGTRFLPATKAMPKEMLPIVNKPLIQYGVEEAMEAGIFNMAIVTGRGKR SLEDHFDISYELEHQIQGTSKEGYLKEIRHILNTCTFSYTRQMEMKGLGHAILMGENLIG NEPFAVVLSDDLCDNEGGVGVLSQMRKIYEKYRCSIVAVEEVSKEEVSKYGVISGREVDN NTFMVDNMIEKPKPQEAPSNLAIIGRYILTPDIFEILKHTKPGKNGEIQITDALLEQCKK GMVLAYKFQGKRYDCGSVDGFVKATNIFYQKFQGK >gi|197283032|gb|ABQU01000018.1| GENE 14 11841 - 12290 570 149 aa, chain + ## HITS:1 COG:no KEGG:WS0341 NR:ns ## KEGG: WS0341 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 148 4 152 155 97 37.0 1e-19 MYNLNFYLFIWIALFVSMLPFMLLSSAFLILGKIQAYLEAQKSREKMLKNIRYLISLLQN NPDKETLDEALDSFKKNFLIFGNLKKDNKDYQDRMDFISALAWCPLIDIDSVARYREEFI KANPNFKKEIETIISSALKNREKSEKDKK >gi|197283032|gb|ABQU01000018.1| GENE 15 12310 - 13779 953 489 aa, chain + ## HITS:1 COG:VC0238 KEGG:ns NR:ns ## COG: VC0238 COG0110 # Protein_GI_number: 15640268 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Vibrio cholerae # 5 188 18 182 188 78 35.0 2e-14 MQKHLKENGNIIYGDLTKQVNFKCDFKGKNNIVFLAGGSRNVNIACRGNNALIFIGNNVR ANGGIDICNDGVCFVDDSSSFNGTTMRVYEAKNIIFGRDCMFSWGIWLSTCDHHLIIDST SNHRINFSKSIYIGDHVWCGQESSILKGSFIASGAIAGAKTCVASKQYYSNTINAGMPAR EVKQGVFWLRDDPCAGNWTKEQTAQNIHKEIDDFKYTYDKSQFLSPKAIESKLDSLNTAY EKLEFLYDALYCNKNKNRFAYFKDCQYDIPLPKYEKRFKNLNFTEIKSQPIAPPKPEPTP QELEIKSLKASLDSTKKQLESKNKILESMNKTLESKTKEIDFTLHYGTAKNRIHNHLSYK LGKAMIENSKSILGYIRMPYVLSYIKEQHNKEQKQYQEQIKKNPNLKLPKLESYKDYKEA LKEKECFTYKLGEAFIRANTLKSKNNINNNTNNISGGGGADIIKTTISLYPTIYSLQTHC LLQIYKRSA >gi|197283032|gb|ABQU01000018.1| GENE 16 13824 - 15092 1591 422 aa, chain + ## HITS:1 COG:HP0648 KEGG:ns NR:ns ## COG: HP0648 COG0766 # Protein_GI_number: 15645272 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Helicobacter pylori 26695 # 1 422 1 421 422 530 64.0 1e-150 MDFLKIIGESKLQGSIGISGAKNSALPLIALSTLAKNEITLENLPEVVDIKTFLSLLSML GCGIQEIDNHTKTIITSTLNNTKANYDIVRKMRASILVLGPLLGRFGYCEVSLPGGCAIG ARPVDLHIKALKKMGAKIQIQGGYIIAEAKNGLKGNVINFDKITVTGTENILMAAAMAKG KTKIINAAKEPEVVQLCEVLKESGIDIQGIGSDEIEIYGTDMQPLIFPKPICVIPDRIEA GTYLCAGAITNSQITLNNINPTHLEAIISKLEEIGFKLQFSQDSITIYPTQNPQAFELST TEYPGFPTDMQAQFMALATQCEGSSIIQERLFENRFMHVSELQRMGANITLKGNTATIQG KSKLYGADVMATDLRASSALVLAALVAKGESNIHRIYHLDRGYESLESKLTKLGAKITRE KE >gi|197283032|gb|ABQU01000018.1| GENE 17 15089 - 16024 682 311 aa, chain + ## HITS:1 COG:HP0707 KEGG:ns NR:ns ## COG: HP0707 COG0275 # Protein_GI_number: 15645330 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Helicobacter pylori 26695 # 5 309 8 306 308 280 50.0 2e-75 MNPPHISVLKQEVLETFENELITKNGGILIDCTLGFGGHSLALLEKYPKLKIIGIDQDND AIALATKRLENFKDRFSIKYGKFSETLKTILSQEQNIVGILADIGVSSMQFDNKERGFSF ESETLDMRMDKTKNFNAKDIINTYSLPELERIFKNFGEIREYKKLAHCIIELRKKEKITS AKMLSEFIARHFKHPKIHPATLAFQALRIEVNNELGELERLLQIFETHKMQNGARLCIIS FHSLEDRIIKTYFKKWENPCICPQEAMLCKCGKNHQKGKNLYKKPLTAKAQEIQENPRSR SAKLRAFEFFS >gi|197283032|gb|ABQU01000018.1| GENE 18 16036 - 16569 750 177 aa, chain + ## HITS:1 COG:no KEGG:Abu_1319 NR:ns ## KEGG: Abu_1319 # Name: not_defined # Def: hypothetical protein # Organism: A.butzleri # Pathway: not_defined # 111 170 10 69 92 62 53.0 5e-09 MESYGDLRLKESDKIQKTNFLNKIFKKESEITQENLEFLEEHANHATMHNQPNQTSQLES FPKDSTSLDSISSNSTANQESPNITLDTQEKEELNELSIDEPTKEIPFKMVCITFGVMFF VLLLFIPKIYIRNNIYYTSRNIVQLQTQLDSLNEENKQIKKQLEDIKFRNLTHELDF >gi|197283032|gb|ABQU01000018.1| GENE 19 17068 - 18099 984 343 aa, chain + ## HITS:1 COG:jhp0740_1 KEGG:ns NR:ns ## COG: jhp0740_1 COG0108 # Protein_GI_number: 15611807 # Func_class: H Coenzyme transport and metabolism # Function: 3,4-dihydroxy-2-butanone 4-phosphate synthase # Organism: Helicobacter pylori J99 # 6 201 5 200 200 323 79.0 2e-88 METIIRVEEAIKAIKNGEMIIIMDDEDRENEGDLVMAGIFSTPEKINFMAQEARGLICVS ITKEIAQSLDLPPMVSNNSSNHETAFTVSIDAKEAKTGISAYERDLTINLMCKANANPND FVRPGHIFPLIAKEGGVLERTGHTEASVDICRLAGLKPISVICEIMKEDGMMAKRGDRFL SEFSTKHNLKILYVSDLIQYRLKFEKLTTIISQEEVEFFDTKATKIKIKDHLNQIHSIFK FNNPTQKPLVKFHTIKEDLELLENTISFKGLMRSIEILKKEGGYLVFLKTKTNKDIKELG IGAQILKSFEIEDFRLLTTSNFDENECSMLSGFNLKILERIEV >gi|197283032|gb|ABQU01000018.1| GENE 20 18165 - 19077 617 304 aa, chain + ## HITS:1 COG:HP0376 KEGG:ns NR:ns ## COG: HP0376 COG0276 # Protein_GI_number: 15645004 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Helicobacter pylori 26695 # 5 304 18 318 334 295 49.0 5e-80 MQKNTPKKAIVLLNMGGASSLNEVEIFLKNMFNDPYILPIKSDFFRKILANFITHKRLEE SQNNYKKIGGKSPIIEHTFKLCQTLESLDESYFYTYAMRYTPPFANMVAKELQSKNIQEI VLFSMYPHFSYTTTQSSYEDFLYALKTLNYHPKIHFIKNYFDDLDYNKAIIHRIKESLNN EDSNDFHLIFSAHSLPQKNIDRGDPYQKEILANVNILKKLLPQEGLNFASIQVAYQSKLG PIKWLEPSLENTLKKYKNKKVIIYPIAFSMDNSETDFELSIQYKEVSQNLGILDYRVARC LNDS Prediction of potential genes in microbial genomes Time: Tue May 24 02:09:23 2011 Seq name: gi|197283031|gb|ABQU01000019.1| Helicobacter pullorum MIT 98-5489 cont2.19, whole genome shotgun sequence Length of sequence - 11325 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 4, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 + CDS 90 - 686 524 ## COG2143 Thioredoxin-related protein 2 1 Op 2 . + CDS 753 - 3539 2391 ## COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component + Prom 3551 - 3610 14.8 3 2 Op 1 16/0.000 + CDS 3639 - 5456 1728 ## COG0441 Threonyl-tRNA synthetase 4 2 Op 2 36/0.000 + CDS 5453 - 5968 347 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 5 2 Op 3 46/0.000 + CDS 5993 - 6187 327 ## PROTEIN SUPPORTED gi|239523241|gb|EEQ63107.1| 50S ribosomal protein L35 + Prom 6201 - 6260 1.8 6 2 Op 4 . + CDS 6285 - 6638 590 ## PROTEIN SUPPORTED gi|239523243|gb|EEQ63109.1| 50S ribosomal protein L20 + Term 6646 - 6676 1.2 7 3 Tu 1 . + CDS 6714 - 7439 693 ## WS1329 putative periplasmic protein + Term 7619 - 7656 -0.3 - Term 7210 - 7239 -0.2 8 4 Op 1 9/0.000 - CDS 7447 - 8847 707 ## PROTEIN SUPPORTED gi|157165073|ref|YP_001466086.1| 30S ribosomal protein S12 9 4 Op 2 . - CDS 8840 - 11290 2817 ## COG0841 Cation/multidrug efflux pump Predicted protein(s) >gi|197283031|gb|ABQU01000019.1| GENE 1 90 - 686 524 198 aa, chain + ## HITS:1 COG:jhp1004 KEGG:ns NR:ns ## COG: jhp1004 COG2143 # Protein_GI_number: 15612069 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin-related protein # Organism: Helicobacter pylori J99 # 10 196 16 214 223 129 36.0 3e-30 MKKIIQIWCIVLAFFLVGCEEKIDSNIVSSGTKNTQEQLDAMQNVDKNSYKEVADVFLET QTISTKDNKPYFLVFAANGCIYCDKLKELIRSNNEIKKILQDRFSPYYINLSYSKTHTID FLEKPQETAQFAQIYNIKPTPTLVFLTPKGKILFIYPGYMPKERFMATLEFLQNPSLESK EQKEISQELQAIFESKNI >gi|197283031|gb|ABQU01000019.1| GENE 2 753 - 3539 2391 928 aa, chain + ## HITS:1 COG:jhp1003_2 KEGG:ns NR:ns ## COG: jhp1003_2 COG0755 # Protein_GI_number: 15612068 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, permease component # Organism: Helicobacter pylori J99 # 644 927 3 284 285 379 66.0 1e-104 MNQLRILMNNTIKGFCNFWITIVLLLAYGSACAVATFVENDYGTPSAKALVYNTQWFDLL HILLVLNLIGLLLLSRAWQRKKYASFLFHSSLVVIFIGAAMTRYYGFEGVMHIREGQKSN TLQSQEEFLTIFAKLDGKYYRAFFPTTLTPLVQDKFNYTLPFDNDELKIKFLDYTPAKDK TTLDTLKVEISYQGFTQITEIEKNVMGQSPIPFNLGNSQFALEWGTRTITLPFSIELKDF QLDRYAGSMSPSSYASEIIVIDETKNLEKPYRIFMNNVLDYGGFRFFQSSYDQDEQGTIL SVNRDPGKIPTYIGYAMLTLGLLWSFFAKNGRFYKLSRYLKAQNLIFAASLALSAFALQT PLNATQNNATIPEIPPITNESVLDLIQNLKEKSAPHSALFGKILVQDFGGRIKPMDTLAM EYIHKMTKKDNFLGLSNMQLFLGMMMYPNEFKKIKMIAISTPKLKELIGVEKNQKYIAFE DVFVDNQYKLLNYLEEANRKKPAMRDKFDKDIIEVDERINVAYLIYTAQSLRIIPDFSRQ TTTWFAPTEAMAGFQEKDREQIHKLFNAYFMSFHQGLVENNWENANLAIEALKNIQSKFG TDLLPPQSKIDLEILLNHYNIFDNLTPLYILAGVILFIIVLVQIFRNKSVNIFANKAIHI FIALLVLIHTIGLGVRWYVGGHAPWSNAYESMIYIAWAAGIAGVIFFKKSYLALATASFL AGISLFVAHLGFMNPQIGNLVPVLKSYWLNIHVSIITASYGFLGLCFMLGAITLGLFIFR SSKYPQIDNTILTLHTINEMAMILGLAMLTIGNFLGGVWANESWGRYWGWDPKETWALIS IVVYIIVLHIRFLPKGDNPYVFATLSVIGFYSILMTYFGVNFYLSGLHSYAAGDPIPVPT FLYYFVAATILLILLAARKSDLQSPKLN >gi|197283031|gb|ABQU01000019.1| GENE 3 3639 - 5456 1728 605 aa, chain + ## HITS:1 COG:jhp0113 KEGG:ns NR:ns ## COG: jhp0113 COG0441 # Protein_GI_number: 15611183 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Helicobacter pylori J99 # 2 605 3 612 612 835 66.0 0 MSQIIGFKINSEIYDTQTASELGLEGTPIYFDNSQESLSIMRHTCAHLMAEAIKSLYPEA QFFVGPVVEEGFYYDFRVNQKISEEDLKNIESKMKEIAKKGEKITKYYLPRDKAIEKFKN DDLKQAVISRIPEGDGRLSIYSQGDFEDLCRGPHLPTLKLLNAFKLTKIAGAYLGGDEKA EMLVRIYGIAFADKESLNQYLHQMEEAKKRDHRKVGTEMELFTFDEEIGAGLPIWLPKGS RLRRNIENLLTKALIQRGYEPVRGPEILKSAVWKTSGHYANYGENMYFTTIDGVEYGIKP MNCVGHIKVYQSALRSYRELPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCRPS QIGIEVENIIDFTKKIMDSFGFSYEMEISTRPQKSIGSDEVWEEATEALKNALNRCNIPY KIDEGGGAFYGPKIDIKITDAIGRKWQCGTVQIDMNLPDRFKLEYTDENNSSKQPVMIHR AILGSFERFIAILTEHFGGEFPFFIAPTQAIIIPIGESQESYAKELRNALLNVGVYTEID NKNETLNKRIRNAEKQRVPMILILGAKEQEERIIAIRDRREKQQFTMGFDEFIKFSKEKM REVSF >gi|197283031|gb|ABQU01000019.1| GENE 4 5453 - 5968 347 171 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 10 171 3 165 166 138 41 2e-32 MSKNVDVILNEEIDFPEIRCVGDDGEQYGLISSQEALKIAEDKGLDLVLIAPDAKPPVCK IMDYGKFRYQQEKKQKEAKKKQKQIEIKEIKLSVKIAINDINYKVKHAKEFLKENKHVRF RVFLRGREVSEPQVGFEVLNKVASMLEDVANIDRDYKVEGRYVNMLVTPKK >gi|197283031|gb|ABQU01000019.1| GENE 5 5993 - 6187 327 64 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523241|gb|EEQ63107.1| 50S ribosomal protein L35 [Helicobacter pullorum MIT 98-5489] # 1 64 1 64 64 130 100 4e-30 MPKMKTNRGAAKRFKLKKNLIKRGSAFKSHILTKKRPRKIANLNAPKYVHDANIESVKKM LCMA >gi|197283031|gb|ABQU01000019.1| GENE 6 6285 - 6638 590 117 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523243|gb|EEQ63109.1| 50S ribosomal protein L20 [Helicobacter pullorum MIT 98-5489] # 1 117 1 117 117 231 100 1e-60 MARVKTGVVRRRRHKKILKLARGFYSARHKHFRKAKEQLERSLCYAFRDRKQKKRDFRKL WIVRINAACRINAISYSRFMFGLKKAGIALDRKILADIAMNEPQSFAKIVESAKKAL >gi|197283031|gb|ABQU01000019.1| GENE 7 6714 - 7439 693 241 aa, chain + ## HITS:1 COG:no KEGG:WS1329 NR:ns ## KEGG: WS1329 # Name: not_defined # Def: putative periplasmic protein # Organism: W.succinogenes # Pathway: not_defined # 23 241 28 246 246 91 23.0 3e-17 MTKKFLFIAAFSSVSLFANEMLIKQNVSIDAKISPTTYFSNIQVIGNDKLRKEKNLSLKD KNSLIKTFNSLNDFIKNSEICKGGNFSITPFYEYKDNKKEQTGFESNYRLDCEFKEEATE DFNAILDFIQKETQENPYLIFPIPKITKNIKEEDLKALDDTLNQKLIQKANAMALEYSKI LNKKCLIKEITLGEDSQIENPILYRTQALAKSNDNALEKIEMPTAKEITKSADGKVIFIC K >gi|197283031|gb|ABQU01000019.1| GENE 8 7447 - 8847 707 466 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157165073|ref|YP_001466086.1| 30S ribosomal protein S12 [Campylobacter concisus 13826] # 2 461 3 460 460 276 33 4e-74 MNKSILALVCLGILVGGCSLSPKYEQPKTNLPQDFGVEASKESISQTWWKDFNDEYLNNI VEEALKNNYDLAVAMERVSQARSSWSYARSDRYPTISAQGEATRNKENPSQGMYDNYNNF SLSGVLSFELDLWGKARDTDRSAYATLLANKANRDTVRLSLIANVVESYFGILTLNNQVQ ISQNTLKSREESYEYRKKEFEAGKISEIDMQQAKSEMASVRAQLQSLLMERNSAQTSLLI LLGRDPQGIFNVELPTEAQMLPKAPKVPTGLPSTLLEQRPDIEMATQNLKAANFSIGVAR AAYFPTISLTGLVGYVSPELNELFQSSSSTWNYGGTFVGNVIDFGRTSANVELSKSQYRE MLLNYGNTVRQAFGEVRNYLYNYGMSDERLKSLDEQVEALRRTLVLAEMRYKEGYTNYLE VLTTQSNLFAAELTQQSANLENLSAVINLYKAFGGGWDKSKYAQEE >gi|197283031|gb|ABQU01000019.1| GENE 9 8840 - 11290 2817 816 aa, chain - ## HITS:1 COG:BMEI1629 KEGG:ns NR:ns ## COG: BMEI1629 COG0841 # Protein_GI_number: 17987912 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Brucella melitensis # 7 803 231 1027 1051 927 60.0 0 MRKDLDFTYTVTTQGRFTTPQEFENILIRTNSDGSSLRLKDLARVELGAEDYSVNAFYNG RPAVAFGLFLQPGANALNVAEGVAKKLEELSQTFPEGLQYAIPYDTTSFVNVSIKEVIKT FIEAIILVVIVIYFFLQNFRATIIPVLAVPVSIIGTFAGMYMLGFSINLLTLFGLILAIG IVVDDAIIVIENVERLIHEEKLSVKDATMKAMDEIASPVIAIVLVLSAVFIPVAFIGGFS GEIYKQFAITIVISVVISGFVALTLTPALCVSILKTHEPKPFWIVKKFNDFFEWLTHQFT DKVAHAIRRGVFYVILFVGLIAVTYGLFTRVPTGLVPAEDKGMLLVSMQLPPATALSKTT EMASFMESTIRNNPNVEAVMALAGYDMLSSAVRTFGGTAFVKLKDWDLRKEDNQKSQALA QTFTAQLMQNPNAVIFALNPPPIMGLSLTDGFEMYIQNRTGGSIQDLQKYTQLVLQEAQK RPELTGVRTTLSVNVPQYNVQLDRQKAKSLGVNVDDVFTTLQSTFGSYYVNDFNLYGRTF KVSMQSESEFRETPNDLRNVFVRSSNGDLIPISSLVTFERIIGPDILERFNLFPAAKLMG DAASGYSSGDALKAIEEVANQVLPDGYTVAFSGSSYQEKNAGGTGTIAFIFGLVFVFLIL AAQYERWLMPLAVLTAVPFAVFGAILATWLRDLNNDIYFQIGLVMLIALAAKNAILIIEF AMEAREKQGKNIYDAAVEAARLRFRPIVMTSLAFTIGVLPLAISSGAGAASRHAIGTGVI GGMLAATFIATFFIPLFYTYFARLSEFISNLRNRHE Prediction of potential genes in microbial genomes Time: Tue May 24 02:09:32 2011 Seq name: gi|197283030|gb|ABQU01000020.1| Helicobacter pullorum MIT 98-5489 cont2.20, whole genome shotgun sequence Length of sequence - 14383 bp Number of predicted genes - 13, with homology - 12 Number of transcription units - 6, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 27/0.000 - CDS 1 - 640 733 ## COG0841 Cation/multidrug efflux pump 2 1 Op 2 . - CDS 656 - 1774 1295 ## COG0845 Membrane-fusion protein - Prom 1809 - 1868 9.1 3 2 Op 1 . - CDS 1880 - 1978 60 ## 4 2 Op 2 . - CDS 1950 - 3161 1297 ## COG0019 Diaminopimelate decarboxylase 5 2 Op 3 . - CDS 3180 - 3941 508 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases - Prom 3961 - 4020 7.5 + Prom 3952 - 4011 7.1 6 3 Op 1 1/0.000 + CDS 4045 - 4695 497 ## COG0546 Predicted phosphatases + Prom 4779 - 4838 12.2 7 3 Op 2 14/0.000 + CDS 4862 - 5422 571 ## COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit 8 3 Op 3 14/0.000 + CDS 5431 - 5829 330 ## COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit 9 3 Op 4 23/0.000 + CDS 5832 - 7049 1470 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit 10 3 Op 5 . + CDS 7060 - 8004 968 ## COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit + Prom 8046 - 8105 6.5 11 4 Tu 1 . + CDS 8131 - 9918 1473 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains + Term 10025 - 10062 3.1 12 5 Tu 1 . - CDS 9952 - 11142 1112 ## COG4992 Ornithine/acetylornithine aminotransferase - Prom 11247 - 11306 7.0 + Prom 11139 - 11198 8.2 13 6 Tu 1 . + CDS 11286 - 13937 2326 ## COG2352 Phosphoenolpyruvate carboxylase + Term 14072 - 14121 1.9 Predicted protein(s) >gi|197283030|gb|ABQU01000020.1| GENE 1 1 - 640 733 213 aa, chain - ## HITS:1 COG:BMEI1629 KEGG:ns NR:ns ## COG: BMEI1629 COG0841 # Protein_GI_number: 17987912 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Brucella melitensis # 3 213 2 212 1051 256 58.0 2e-68 MFSKFFINRPVLAMVMSIIIVIAGGLSIFSLAVEEYPQVTPPQVVVQATYPGASAEVISS SVASVLENSINGVEGMIYMQSSSTSSGSLNINIYFTNETDPDQATINVNNRVQAVLSSLP QEVQRQGVTVDKRSSTILAVYSLFSDSPAHDRIFIANYAAINILEELKRVPGVGDAALFS RQEYSMRIWLSPDKLTKYNLTPAEVIALVQEQN >gi|197283030|gb|ABQU01000020.1| GENE 2 656 - 1774 1295 372 aa, chain - ## HITS:1 COG:BMEI1630 KEGG:ns NR:ns ## COG: BMEI1630 COG0845 # Protein_GI_number: 17987913 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Brucella melitensis # 42 364 42 374 395 207 39.0 2e-53 MKNYQKFLLGTFCSLVMFAGCGEKDKQAQQQTMVIPVSTYVVKKQDTPVSFEYPTQLTSP QRVDIYARVEGTLLEQNFIEGGVVKEGQKLFKIDPAKYQANVNIAKAQLLSAQATLKEAS RDWERSKKLFEQKALSPKERDQSLSTYENASANVANAKANLDNAMIDLGYTDVIATASGK IGLTNYDLGNLVGSASSNNALVTITQLDPIQAEFSIPSNDYYFLRTLNRDNLKVSYILPS GNLYDKEGKIDFIDSVVDSSTATIKARAVVENKDFLLVPGEFSRIKLEGFIAKDTITIPQ AALLQDAQGSYVYKIVDGKATQAKVVLGHSVGNTFLIQSGLQEGDVIITNQLVKLRPGAP VNPINNQANQAQ >gi|197283030|gb|ABQU01000020.1| GENE 3 1880 - 1978 60 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRITSTEIVDIGGISNESFSDYFKKKMLLLRF >gi|197283030|gb|ABQU01000020.1| GENE 4 1950 - 3161 1297 403 aa, chain - ## HITS:1 COG:jhp0018 KEGG:ns NR:ns ## COG: jhp0018 COG0019 # Protein_GI_number: 15611089 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Helicobacter pylori J99 # 8 402 2 405 405 504 59.0 1e-142 MLTKHYPKNFKEIPSPCYVLEEEKFIKNLEILDSIQKQSGAKILLALKGYALWRSFEIAK KYLSGVTASGLYEAKLGYETFGGEITTFSPSYKKEEMQELVKISNHIIFNSFVQWQTFKP MIDEANKMRENKIEVGLRVNPLYSEVTPEIYNPCIEGSRLGIPPKEFKKGVKKYGLEGIS GLHFHTHCEQNSDALKRTLKHFIKHFGDYIPQMQWINFGGGHHITRKDYDRELLVKIIKN FKDKFHTEVYLEPGEAVGWQCGFLIGSVIDIVHNGVDIAILDVSAAAHMPDCLEMPYRPM VRNSYGVKAVQKNGHLKLKGEKKYSYRFGGPTCLAGDIIGDYSFREPLKIGDRIIFEDMV HYTIVKNNTFNGIPLPSIGMIDKEGKFQIFKSYSYEDYKHRNS >gi|197283030|gb|ABQU01000020.1| GENE 5 3180 - 3941 508 253 aa, chain - ## HITS:1 COG:Cj0452 KEGG:ns NR:ns ## COG: Cj0452 COG0847 # Protein_GI_number: 15791816 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Campylobacter jejuni # 45 251 39 244 253 151 45.0 1e-36 MIFGNEMPHRYDKIISKLKKRPLSQNEFWLLLDEVGGLFGDRESELEIIKSSGIPLIFAH NKVYLQTTLTPIKEQKFCIVDIETNGHNPFLHQPIEIGAILYQNGMVQKEFQSFVFCEEI PEYITKITNITTEMLRNAPPIHQVLESFRIFLGDCVFVAHNVGFDYGFLSNSLHHYGFGY LYNPSLCTIKLAQKTFQAPRYSLEFLNGFLNINHSPLHRALEDAKVALEVFKTGLKNLNK NIYTSEDLIKFVS >gi|197283030|gb|ABQU01000020.1| GENE 6 4045 - 4695 497 216 aa, chain + ## HITS:1 COG:Cj1477c KEGG:ns NR:ns ## COG: Cj1477c COG0546 # Protein_GI_number: 15792792 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Campylobacter jejuni # 4 199 2 196 213 133 42.0 2e-31 MTKNKIILFDLDGTLIDSTEAVYEGFCEAFKHHNKEIPHKESVSTLIGHTLEDMFHSLGI PKNECEKYINIYKEHYRKICNKKTTLLKNAKESILKANEFAYLGIVTTKTGLYSKALLEH FNVLQYFQCVIGRENVTYAKPNKEPILKALESFPKNIAKQDTFMIGDTPLDILAADNAEI KSFGVLSGYSSLELLQKYTNNLAKDSLDAVCKIQHL >gi|197283030|gb|ABQU01000020.1| GENE 7 4862 - 5422 571 186 aa, chain + ## HITS:1 COG:jhp1035 KEGG:ns NR:ns ## COG: jhp1035 COG1014 # Protein_GI_number: 15612100 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit # Organism: Helicobacter pylori J99 # 1 186 1 186 186 259 65.0 1e-69 MLEIRWHSRAGQGAVTGAKGLADVVAGTGKEVQAFAFYGSAKRGAAMTAYNRIDEQPILN HEKFMIPDYVLVIDPGLVYITDICANEKSNTKYIITTHLSKEEFLKTKPELQNKEVYTLD CIGLSLEAFGKSIPNAPMLGAFLKISQILDLDFFLESFKKVLGKKLPQKIIDANMEVIKK AYNEVK >gi|197283030|gb|ABQU01000020.1| GENE 8 5431 - 5829 330 132 aa, chain + ## HITS:1 COG:HP1109 KEGG:ns NR:ns ## COG: HP1109 COG1144 # Protein_GI_number: 15645723 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit # Organism: Helicobacter pylori 26695 # 4 131 2 129 130 149 62.0 9e-37 MEYKGWNEFEIGSVLFPFEKKGDEIVQEHADKREYRPDSSYKASVAHWRVEKPVYNNQHC INCYFCWVYCPDSSILVRDEKMTGVDYVHCKGCGVCVDVCPTNPKSLLMFNDYESNEVAL SKWPAKEEKKKD >gi|197283030|gb|ABQU01000020.1| GENE 9 5832 - 7049 1470 405 aa, chain + ## HITS:1 COG:jhp1037 KEGG:ns NR:ns ## COG: jhp1037 COG0674 # Protein_GI_number: 15612102 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Helicobacter pylori J99 # 1 404 1 406 407 573 67.0 1e-163 MAEIYELQEVEVWDGNMAASHAMRQAQIDVVSAYPITPSTPIVQNYASFLANGYIDGEFV MVESEHAAMSGCVGAAAAGGRVATATSSQGFALMVEVLYQASGMRLPIVLNVVNRALASP LNVNGDHSDMYLGRDAGWINLCTYNPQEAYDFNLMAFKIAEDYDVRLPVMVHQDGFICSH TAQSVRPLKDDIAYKFIGDYKPKNAMLDFSKPATYGAQTEEDWHFEHKAQLHNAIMNSMP IIERTFKEFEALTGRKYNVVEQYDTQDAEVIIVALGTTVESARIAAKKARENGIKAGVVS IRVLRPFPYEALGEALKNCKAVAFLDRSLPAGAMGMLFNEGVAALYAMANKPIVSNYIYG LGGRDLTQNHLQEIFKELDADCKAGKLTHKTQQFIGLRGPKLGYI >gi|197283030|gb|ABQU01000020.1| GENE 10 7060 - 8004 968 314 aa, chain + ## HITS:1 COG:jhp1038 KEGG:ns NR:ns ## COG: jhp1038 COG1013 # Protein_GI_number: 15612103 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit # Organism: Helicobacter pylori J99 # 1 314 2 314 314 532 75.0 1e-151 MSEIKNLKQFSKAAERFEGANLLCPGCAHGIIVREVLNATDYPLLIATSTGCLEVSTAVY PYTSWDVPWIHIGFENSSTAIAGAEAMYKALKRKGRLYSDKEPKFVAFGGDGSTYDIGFQ FISGCFERGHNFTYVCLDNEVYANTGGQRSGSTPLGASTTTTPAGRVSYGKKDKKKDLLS IMAAHGSPYVAQVAPNKWKDMSKKIKTAIETEGPTFINAMSACTTEWRFPSNQTIEMSDL AVDSLVFPLYEIINGRELRITYRPKNVIPVRDYLGAQARFKHLFKPENEHIIEQWQKDVD AYWEYLQRREEAKI >gi|197283030|gb|ABQU01000020.1| GENE 11 8131 - 9918 1473 595 aa, chain + ## HITS:1 COG:Cj1366c KEGG:ns NR:ns ## COG: Cj1366c COG0449 # Protein_GI_number: 15792689 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Campylobacter jejuni # 1 595 1 598 598 713 58.0 0 MCGIVGYIGNNEKKQILLNGLKELEYRGYDSAGIAVLANNQIQTFKAVGKIANLEEKCKD FSSQGFGLGIGHTRWATHGKPTEANAHPHFAEFSNVVHNGIIENYAQIKQALQDKGHQFI SQTDTEVIVHLFEENLKIHKTPIEAFTHTIESLHGAYAILLITKADENAIFYAKKGSPLI IAKGSDGVYFASSDAPLIGLANKVHYVEDGTIGRMDLQSFESLPNIKELTITKSYAQKDG YRFFMEKEIYEQHKVLLETMMGRVSDEFIGFEEVGGEFFAGIEEITICACGTSYHAGLSA KYLLERLAKVRTNVVFASEFRYAQPVMHKNELFVCISQSGETADTLEALKLAKTNGLKTL AICNVDNSSIVRESDRTILTRAGIEKGVASTKAFATQVMVLWILSVYLGHLRGHIHTQEL KHHAKTMLNATKLTEVDSQLHDRLKRLSKRYLHGHGFFFIGRDIFYPLALEGALKLKEIS YLHAEGYPSGEMKHGPIALADAELFCLALLPKHLLFDKIKSNVQELGARDTTICAICSEE IQEADDMVYIPKCNEYMEEFYAMMVVLQLLSLEIATKLGNDVDMPRNLAKSVTVE >gi|197283030|gb|ABQU01000020.1| GENE 12 9952 - 11142 1112 396 aa, chain - ## HITS:1 COG:slr1022 KEGG:ns NR:ns ## COG: slr1022 COG4992 # Protein_GI_number: 16329751 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Synechocystis # 3 396 23 428 429 295 40.0 1e-79 MVATDLKQMDLDYVLHTYGRNYTHFVRGSGAKLFDDSGRDYIDFGAGIAVCSVGHGNERL ANAICKQARELIHTSNLYLIEPQAKLARELVLQSGYDMRVFFANSGAEANEGAIKIARKF GEVDGEVKRYQIITLDSSFHGRTISTLKATAQSKMHHYFGPFPDGFVYAKDIQDIPNKIS DVTCAVLLELVQGEGGITPFDRSEIQALAKLLKEKNILLMIDEVQTGIYRSGELFASQCY EITPDVITTAKGLAGGVPIGAVMTRLKDIFAPGDHGSTFGGNFLSTRAALEVLEILKEEK QSGRLDKTILYFSQKLQALQKSYPEIFIEEIGLGLMRGLRVRGLDTLTHFLQKAYENGVL VLKSGKNTARFLPSLTITKEEIDEGFNRIETALKTM >gi|197283030|gb|ABQU01000020.1| GENE 13 11286 - 13937 2326 883 aa, chain + ## HITS:1 COG:RSc2358 KEGG:ns NR:ns ## COG: RSc2358 COG2352 # Protein_GI_number: 17547077 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxylase # Organism: Ralstonia solanacearum # 22 883 83 985 985 384 30.0 1e-106 MKNRRIKEADFIFSLMCELLQEVAPEIKEDFISLKEDTTIDYQLKRKLLDSLESKDISKL IKAFTLYYLLLNIIDERYFISLNSKAHIKPTLEELKSQQYDEEDIKNVLRKIKFYPVFTA HPTESLRRTFLESYHEMYDDLNCWFQFQDNNAKEHLKYRLNLLWYSHIVRSEKIEVLFEL DNLLYFMESSILQSGVNVLEEVQNTLQIPLKKSPIRLGSWIGGDRDGNPYVTNGVMIEVM KRQHQTIIEHYLKQIDKLSRELSIAQEYSQPTQELLDSLEREKDYLDDMAKKLFLQEPFR AKLTCMRQKLQNRILALNLPQSALYENKPYMYENPKEFIKDIDMMIESLDKRSGIYLRKL KNLVLLAGFHLMQLDFRQHRDVFWRALTEIFALLGYTQGDFSLLPPKEQTEILNTALNAP LLDLNILYGKLSKESQELLMAFINFKWAKERISDNIIDSCIISMCQSSNDLLCVLWFAKQ SGLWREGKKTRISISPLFETIGDLENAPTILRELCANPQYVEYLQSRKNNQEIMIGYSDS SKDGGIFTSNYSLRKAINNLIILESELKIKFRLFHGRGGSVSRGGGALEDALLSSPDNSV AGFLKTTEQGEVISEKYLNPKKAEYSFSSALATLLKKSVYDKYGINQQICNRDFETIMQK VSEESFKAYRKLVYETEGFIEYFKSATPIEFIQQLNIGSRPSKRKNTQNVEDLRAIPWVF AWTQNRSIIPAWYGLGSGLEEASKICDKAILQECYTKDLFFKTTIDNISQAFLKVDLEIA RHYNAFVEDISLREKIWNMIESEYNLTLKWLLYVRQEKELLTSEKCIQESILLRKSFLTT LSFFQFYLMEQYKKATYEEQRQRIAKQIITTIVGIAQGIRNTG Prediction of potential genes in microbial genomes Time: Tue May 24 02:09:38 2011 Seq name: gi|197283029|gb|ABQU01000021.1| Helicobacter pullorum MIT 98-5489 cont2.21, whole genome shotgun sequence Length of sequence - 3915 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 3914 4736 ## gi|242308787|ref|ZP_04807942.1| predicted protein Predicted protein(s) >gi|197283029|gb|ABQU01000021.1| GENE 1 2 - 3914 4736 1304 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308787|ref|ZP_04807942.1| ## NR: gi|242308787|ref|ZP_04807942.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 721 995 1 287 289 161 53.0 3e-37 NNQSLETKNPKNTKSLDSNPKTNKALESQNPNKIQTAKIQDSKIQLESNPKDLAKLESQK ISKIELESKKIQRVRSTLDSTTKKAKESNKTKSFVRIIPTSIALASALASNMAAAPSDLP SGVNQDFQNVVLEEASGINPKVTVSGTISNGTITSGTAIVSGGNIGSSRRQSADSPYTGG DLVKGDGGATSTIINGWDIKAYNQAQGVSDGNGGIKVTQRNIRAWSYERIYEVLRGTKAG NLTIENNVTMNIVYGGGGGRRLGDIIRISEGASAATITNNGIIRHNSGGVNLVILADGAS VDAVVNNGTITSTATDVLKLEANSNLKKIVNTKLMSATGNDLIRLSGGNNSIEQIELSSG STTSAGTNIINAQSSATIGTITATGATMSGNISLSGTSSITNGISLDNQSKMTGDISLTN NSRIQGGIVLDNSEVTGDISLANGSSILNGLSLNNRSTITNNISLTEKGRIDSLSLNQGT ITGDISLTGNGANVDATSDTDNTRTATIGEITLENSSTITGNINIKGNSADNNAKIGSIT LGNNTGIGGSIAVGDSNNNAKGTIDAITLNGNSTIAGGIINNANGNIGTIINDTSNTTQV SNAGTIGTISINQGEIDYSGDGIITEELVVEKGATLSIDSGNGTITMDSDFGSKLNLKEG SIFEGAIKNLGIVDTLEVTGNISGGITNEATIGSLIVNEDITYNENNGSIANSLKVAKDK TLTAGNGITLEYESTTFARADVIPEDEPFYNAGTIIGNIENTSNSTLPSFTNSGSIEGTF TNNGHIIKFVNESTGVIDSFVNNQSIAFFKNEGNIASFGGTGTIYGVINSNVITGDFNEV STSLWNEEGATITGNVILKGTKQDCGDDSICLQSELLNDGEIQGNVINYTGKQIDLLENT GTIGGSIANFGSIVALEVSGEIAGGIANDGGIGALRVNENLTYRGNGNITNALIVAKDKT LTIQNSGSSNGTLSFDSKNGNVNNLGTIEGNLSNVKGATLANFTNSGTTSQINGNITNNG LITHLENQGTISGTITNDADSTITNFANNGTITGNLYNDGHIDTLTNAGTMGTIYNRSKN TIKNQVNNAGAVIAEIDNSNGRYDTLQNYGTITGNINNNNGTITNLVNANSGTIGGNIDN SNGIIENFENSGTIAGNITNSLGNITIDNKESGFIGEIITSNGGITNISNSANGNIKLIT NNINSTTNIQSWNVGDASNPNNPIKVAGNNLGGINTGIIYVDAIAGREYTISDIVEGSNG NFDSSGNSYASQLNGGKGESSIVDSLRGVADIYSFTHVGKDKYS Prediction of potential genes in microbial genomes Time: Tue May 24 02:10:43 2011 Seq name: gi|197283028|gb|ABQU01000022.1| Helicobacter pullorum MIT 98-5489 cont2.22, whole genome shotgun sequence Length of sequence - 48741 bp Number of predicted genes - 50, with homology - 47 Number of transcription units - 16, operones - 10 average op.length - 4.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 87 - 127 8.1 1 1 Op 1 . - CDS 139 - 894 997 ## COG1344 Flagellin and related hook-associated proteins 2 1 Op 2 27/0.000 - CDS 940 - 2304 1712 ## COG0439 Biotin carboxylase 3 1 Op 3 . - CDS 2304 - 2777 495 ## COG0511 Biotin carboxyl carrier protein - Prom 2801 - 2860 8.4 + Prom 2760 - 2819 10.4 4 2 Tu 1 . + CDS 2852 - 3412 703 ## COG0717 Deoxycytidine deaminase + Term 3568 - 3596 -0.9 - Term 3362 - 3401 1.1 5 3 Op 1 8/0.000 - CDS 3529 - 4731 806 ## COG0675 Transposase and inactivated derivatives 6 3 Op 2 . - CDS 4715 - 5350 585 ## COG2452 Predicted site-specific integrase-resolvase - Prom 5379 - 5438 7.1 7 4 Op 1 . - CDS 5456 - 6058 754 ## COG2849 Uncharacterized protein conserved in bacteria 8 4 Op 2 . - CDS 6051 - 7130 1054 ## COG1289 Predicted membrane protein - Prom 7171 - 7230 7.1 + Prom 7158 - 7217 8.9 9 5 Op 1 3/0.333 + CDS 7246 - 7950 741 ## COG0149 Triosephosphate isomerase 10 5 Op 2 . + CDS 7961 - 8779 1075 ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) 11 5 Op 3 3/0.333 + CDS 8807 - 9073 250 ## COG1987 Flagellar biosynthesis pathway, component FliQ 12 5 Op 4 . + CDS 9073 - 9894 686 ## COG0812 UDP-N-acetylmuramate dehydrogenase + Term 10094 - 10141 1.4 - TRNA 9970 - 10044 82.8 # Asn GTT 0 0 + Prom 10106 - 10165 6.5 13 6 Tu 1 . + CDS 10195 - 10908 956 ## COG0217 Uncharacterized conserved protein + Term 10947 - 10998 -0.0 + Prom 10924 - 10983 9.6 14 7 Tu 1 . + CDS 11010 - 11330 558 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Prom 11377 - 11436 6.9 15 8 Op 1 2/0.333 + CDS 11460 - 12899 1724 ## COG0739 Membrane proteins related to metalloendopeptidases 16 8 Op 2 2/0.333 + CDS 12908 - 13486 657 ## COG0850 Septum formation inhibitor 17 8 Op 3 3/0.333 + CDS 13483 - 14376 1072 ## COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase 18 8 Op 4 . + CDS 14385 - 14840 379 ## COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone 19 8 Op 5 . + CDS 14842 - 15723 766 ## COG0053 Predicted Co/Zn/Cd cation transporters 20 8 Op 6 . + CDS 15707 - 17437 1513 ## COG0464 ATPases of the AAA+ class 21 8 Op 7 . + CDS 17498 - 18832 1128 ## COG0733 Na+-dependent transporters of the SNF family 22 9 Op 1 . - CDS 18840 - 19169 468 ## WS0805 hypothetical protein 23 9 Op 2 . - CDS 19226 - 19441 268 ## gi|242309984|ref|ZP_04809139.1| predicted protein 24 9 Op 3 . - CDS 19458 - 20618 965 ## COG0520 Selenocysteine lyase 25 9 Op 4 . - CDS 20634 - 20846 234 ## Sdel_0027 SirA family protein 26 9 Op 5 . - CDS 20848 - 21906 426 ## PROTEIN SUPPORTED gi|167854911|ref|ZP_02477687.1| ribosomal protein L11 methyltransferase - Prom 22015 - 22074 6.3 27 10 Op 1 51/0.000 - CDS 22094 - 24175 2647 ## COG0480 Translation elongation factors (GTPases) 28 10 Op 2 56/0.000 - CDS 24249 - 24716 786 ## PROTEIN SUPPORTED gi|239523287|gb|EEQ63153.1| 30S ribosomal protein S7 29 10 Op 3 5/0.000 - CDS 24729 - 25118 650 ## PROTEIN SUPPORTED gi|224418577|ref|ZP_03656583.1| 30S ribosomal protein S12 - Prom 25140 - 25199 4.7 30 10 Op 4 2/0.333 - CDS 25214 - 33859 10046 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit - Term 33893 - 33926 1.3 31 11 Op 1 47/0.000 - CDS 33935 - 34312 605 ## PROTEIN SUPPORTED gi|239523290|gb|EEQ63156.1| 50S ribosomal protein L7/L12 32 11 Op 2 43/0.000 - CDS 34332 - 34814 790 ## PROTEIN SUPPORTED gi|239523291|gb|EEQ63157.1| 50S ribosomal protein L10 - Prom 34835 - 34894 1.5 - Term 34835 - 34874 -0.6 33 11 Op 3 55/0.000 - CDS 34910 - 35614 1158 ## PROTEIN SUPPORTED gi|239523292|gb|EEQ63158.1| 50S ribosomal protein L1 34 11 Op 4 45/0.000 - CDS 35638 - 36063 710 ## PROTEIN SUPPORTED gi|239523293|gb|EEQ63159.1| 50S ribosomal protein L11 35 11 Op 5 46/0.000 - CDS 36086 - 36616 697 ## COG0250 Transcription antiterminator 36 11 Op 6 . - CDS 36633 - 36812 126 ## COG0690 Preprotein translocase subunit SecE 37 11 Op 7 . - CDS 36830 - 36901 62 ## - TRNA 36841 - 36916 73.6 # Trp CCA 0 0 38 11 Op 8 4/0.000 - CDS 36947 - 37117 295 ## PROTEIN SUPPORTED gi|224418585|ref|ZP_03656591.1| 50S ribosomal protein L33 39 11 Op 9 . - CDS 37126 - 38325 1508 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 - Prom 38350 - 38409 6.3 40 12 Tu 1 . - CDS 38411 - 38533 83 ## - TRNA 38440 - 38514 83.6 # Thr GGT 0 0 - TRNA 38586 - 38662 94.6 # Gly TCC 0 0 - TRNA 38675 - 38759 62.2 # Tyr GTA 0 0 - TRNA 38806 - 38881 90.5 # Thr TGT 0 0 + Prom 38892 - 38951 8.4 41 13 Op 1 . + CDS 39064 - 41046 2049 ## COG1629 Outer membrane receptor proteins, mostly Fe transport 42 13 Op 2 . + CDS 41046 - 41621 324 ## WS1231 hypothetical protein 43 13 Op 3 4/0.000 + CDS 41564 - 42289 513 ## COG0212 5-formyltetrahydrofolate cyclo-ligase 44 13 Op 4 . + CDS 42204 - 43775 2105 ## COG1418 Predicted HD superfamily hydrolase 45 13 Op 5 . + CDS 43779 - 44828 893 ## COG0859 ADP-heptose:LPS heptosyltransferase 46 14 Tu 1 . - CDS 44845 - 45012 66 ## - Prom 45036 - 45095 5.6 + Prom 44897 - 44956 10.6 47 15 Op 1 . + CDS 44983 - 45933 437 ## HH0206 hypothetical protein 48 15 Op 2 . + CDS 45935 - 47041 697 ## COG0562 UDP-galactopyranose mutase 49 15 Op 3 . + CDS 47063 - 47908 293 ## gi|242310008|ref|ZP_04809163.1| predicted protein + Prom 47960 - 48019 12.7 50 16 Tu 1 . + CDS 48089 - 48740 611 ## COG0463 Glycosyltransferases involved in cell wall biogenesis Predicted protein(s) >gi|197283028|gb|ABQU01000022.1| GENE 1 139 - 894 997 251 aa, chain - ## HITS:1 COG:Cj0720c KEGG:ns NR:ns ## COG: Cj0720c COG1344 # Protein_GI_number: 15792069 # Func_class: N Cell motility # Function: Flagellin and related hook-associated proteins # Organism: Campylobacter jejuni # 16 250 15 248 249 151 47.0 1e-36 MKIGNTQNTNESLINLNKAKEEEEKALQKISSPRPIESTDGASLAIANALLAQANSMSQG IRNANDALGVLQIADGTLSTLTDSAIQINELSVALGNPALNSSQRAMIQNEATALTQSMN DAVSQATFNGKNVFSGQMSFVTGNGTESINLQAPNTANLSVNNQQSILDFIEQVGMSRAD IGAAMNGIQSGINSSMNTVVNLKAAEGNLLDDDLAENYNELNTAKLKANAALYAASFNNQ YLQSRLDSLLN >gi|197283028|gb|ABQU01000022.1| GENE 2 940 - 2304 1712 454 aa, chain - ## HITS:1 COG:jhp1011 KEGG:ns NR:ns ## COG: jhp1011 COG0439 # Protein_GI_number: 15612076 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Helicobacter pylori J99 # 6 445 13 453 455 631 74.0 0 MSNKQINTILIANRGEIALRAIRTIKEMGKKAIAVYSTADKDAHYLDLADAKVCIGGDKS SESYLNIPAIISAAELFSADAIFPGYGFLSENQNFVEICKYHNIEFIGPNSEVMALMSDK SKAKEVMKNAGVPVIPGSDGAIKSKEEALKLAKEIGYPVILKAAAGGGGRGMRIVQSEEN MFNAYLAAESEAISAFGDGTIYMEKFIDKPKHIEVQILADKHGNVLHIGERDCSLQRRHQ KLIEESPAPTLEPHTRKKLLETAIQATKAIKYVGAGTYEFLLDNEQNFYFMEMNTRLQVE HPVSELVSGLDIIKLMIEIAEGKELPKQDSVSFDGCAIECRITAEDPVKFYPSAGKITKW IAPGGNNVRIDSHAYAGYVVPMFYDSMIGKLIVWGKTRDEAIARMQRALDEFCIEGIKTT IDFHKEMMKNDDFKRGVIHTKYLEQKIESGMKNA >gi|197283028|gb|ABQU01000022.1| GENE 3 2304 - 2777 495 157 aa, chain - ## HITS:1 COG:Cj1291c KEGG:ns NR:ns ## COG: Cj1291c COG0511 # Protein_GI_number: 15792614 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Campylobacter jejuni # 1 157 1 151 151 106 43.0 1e-23 MDFKEIKELIKIFDASSLNALSITQENSKIKLEKGIKTPQIVESQNTQILSPITTQIPQS PSQIEVAPQAPIQSPTTRGETINSPMVGTFYRCPSPDAPAYVNVGDKVKKGQTLAIIEAM KIMNEIEAEFDCVIKEIIPTDAQPVEYNSPLFVVEKI >gi|197283028|gb|ABQU01000022.1| GENE 4 2852 - 3412 703 186 aa, chain + ## HITS:1 COG:Cj1292 KEGG:ns NR:ns ## COG: Cj1292 COG0717 # Protein_GI_number: 15792615 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidine deaminase # Organism: Campylobacter jejuni # 1 186 1 186 186 332 85.0 2e-91 MGLKEDSWIRKMALEHKMIEPFCENQIGKGVVSYGLSSYGYDIRVSNEFKIFTNINAMVV DPKNFDSANVVDFVGDVCIVPPNSFALARTIEYFKIPRNTLAICLGKSTYARCGIIVNVT PFEPEFEGHITIEISNTTPLPAKIYANEGIAQVLFLEGDAPCEVSYKDKKGKYQSQEGIT LPKILK >gi|197283028|gb|ABQU01000022.1| GENE 5 3529 - 4731 806 400 aa, chain - ## HITS:1 COG:XF0536 KEGG:ns NR:ns ## COG: XF0536 COG0675 # Protein_GI_number: 15837138 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Xylella fastidiosa 9a5c # 46 379 51 362 390 223 36.0 4e-58 MIISHKIELIPNNKAKTYFKKAFGCSRLAYNWRLAKWQEYYKQGIKKTYLDLKKEFNAIK KEQFPFVYEVSKYATQQPFIHLNLAFNKFFRDLKQGKLSYPKFKKKKDNQGSFYLGGDII KFSTKNNKTYLKIPNLGKVKLREKLRFNGTINSVTISQKANKYYASFSMEISDDEFHQTH KQALDSHQALGIDMGLNSFVSLSNGLNIQAPKPLDKLTRKLKKIQRKLSKKIHPKTKGDT TKKSKNYFKQSLKLSKIHQKIKNTRNDFLHKLTTILIRHYAYFGIENLNIQGMMKNHHLA KAISDVSFYEFKRMLTYKAGYYKRVVIEADTFYPSSKQCFVCKSKKEKLMLSQRVYQCEN CGSILDRDYNAALNLQSLAQEKVGLVQAEFTPLGLDGSTR >gi|197283028|gb|ABQU01000022.1| GENE 6 4715 - 5350 585 211 aa, chain - ## HITS:1 COG:MJ0014 KEGG:ns NR:ns ## COG: MJ0014 COG2452 # Protein_GI_number: 15668185 # Func_class: L Replication, recombination and repair # Function: Predicted site-specific integrase-resolvase # Organism: Methanococcus jannaschii # 1 208 4 206 213 128 38.0 9e-30 MNKLIAIGQASKLLGVTIQTLRNWDKQGLLKPDEITKGGSRRYKLESLKNINKNIKFNTD NLKTIAYARVSSHDQKDDLIRQVQVLELYCANAGFNYEIIQDLGSGMNYYKKGLTKLLNL ILEGQVKRLVITHKDRLLRFGAELVFAICEAKEVEVIIINKGDENIKYEEELAKDVLEII TVFSARLYGSRSKKNKKLLESMQEVINDNLS >gi|197283028|gb|ABQU01000022.1| GENE 7 5456 - 6058 754 200 aa, chain - ## HITS:1 COG:FN2118 KEGG:ns NR:ns ## COG: FN2118 COG2849 # Protein_GI_number: 19705408 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Fusobacterium nucleatum # 12 192 61 241 245 113 37.0 2e-25 MSEEIEKTYYPNGVLKAEVPYKNGKRNGIAKQYYEDGKLMLEMSLIEDKVSGVMRQYDTQ GNLELESVYLDNSKYGVEKWYYPSGAIKAEIPYKEGKKCGIVKWFYESGILKAETSYKED EECGEVREYYPNGQLKYEAYFENGVMDGEEKVYYENGQIWCVTPVQDGKEEGIAKEYDKS GKLIKTKQYAKGVCLQESKP >gi|197283028|gb|ABQU01000022.1| GENE 8 6051 - 7130 1054 359 aa, chain - ## HITS:1 COG:Cj0557c KEGG:ns NR:ns ## COG: Cj0557c COG1289 # Protein_GI_number: 15791918 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 3 351 4 354 361 294 47.0 2e-79 MNLERLKGEIGLIFTWNKSDRLWQMPFFAGVGVAIILFVAAYFKRPDLGLVAIIGANIFL YVPDTPIYHKMVLSMSCAFGMILAFSLGLVGQLFPSLIPLIAFIVTMVSAQVVRYFNIGA PGFFFFTFAALIGTYIPFKIEDYFMVIGLVAVGTIVANAMVLLYSLSVIYIFKHTPKPIP KAGEFGFGVIVIDPIIIASFVAFATYLQGFLELERGYWVGVSCAAVLTAITFKQIRIKQT QRILGTIVGVSFAYFLLHFHFSPIEFAILMMILMFFAELVVVRNYALAMIFVTPYTTYLA EVGSFMNYNPDILIQARVLDIAIGSVIGLLGGAVMHWKFLRNILEKITHKIIYKWVGNE >gi|197283028|gb|ABQU01000022.1| GENE 9 7246 - 7950 741 234 aa, chain + ## HITS:1 COG:HP0194 KEGG:ns NR:ns ## COG: HP0194 COG0149 # Protein_GI_number: 15644823 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Helicobacter pylori 26695 # 2 230 3 231 234 224 51.0 1e-58 MKIIASNFKTNHTRKSTKEFCKTLQDFLMHQKIPHKITIFPPATALLDNDFNDFKIGSQN AYPADNGSFTGEIGLDQLREFAINSLIIGHSERREILGESQKMCAKKFDFFKAQNFEIFY CIGESLEIKNKGLQATLDFLDSQLDGIDLNYPKLIIAYEPIWAIGTGVSASLQEIETIHT HLKQKLDKIPLLYGGSVKANNTKDILNIQGVDGVLIGSASWEISSFLEILKNSL >gi|197283028|gb|ABQU01000022.1| GENE 10 7961 - 8779 1075 272 aa, chain + ## HITS:1 COG:jhp0181 KEGG:ns NR:ns ## COG: jhp0181 COG0623 # Protein_GI_number: 15611251 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Helicobacter pylori J99 # 3 269 4 270 275 392 72.0 1e-109 MIMQGKKGLIVGVANNKSIAYGITKACKEQGATIALTYMNESIQKRVLPIAQEIQSPYVY ELDVSKKEHFAALREQIKKDFGTLDFLVHSVAFAPKEALDGSFLETSKEAFNIAMEISVY SLIELCRELEPILAPNASILTLSYLGSVKHVAHYNVMGVAKAALESSVRYLAHDLGVKGI RVNAISAGPIRTLAASGIGDFKFILNWNEANSPLRKNVSIEEVGNSAMYLLSPLGSAVTG EIHYVDCGYNIMGMAAVEEIDGKASLVWDRVK >gi|197283028|gb|ABQU01000022.1| GENE 11 8807 - 9073 250 88 aa, chain + ## HITS:1 COG:HP1419 KEGG:ns NR:ns ## COG: HP1419 COG1987 # Protein_GI_number: 15646028 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliQ # Organism: Helicobacter pylori 26695 # 1 87 1 87 88 68 72.0 3e-12 MEAQLMNLAIETYKITLVLSLPMLLVGLVIGLLISIFQATTQINEMTLTFVPKILAVIVV IIFTMPWMLNMLIDFTARIFNMMPTFIF >gi|197283028|gb|ABQU01000022.1| GENE 12 9073 - 9894 686 273 aa, chain + ## HITS:1 COG:jhp1313 KEGG:ns NR:ns ## COG: jhp1313 COG0812 # Protein_GI_number: 15612378 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Helicobacter pylori J99 # 1 273 1 259 259 238 44.0 6e-63 MIQKVIDFAVYSSIKIGAALQVSIIQTPQDYYESLQYTISPNIVGAANNLLVSPNAKNLI MLDKKFSYIKDCGDYLEVGALTPSGKLFSYAKKHNLAGFEILSGLPGSIGGIIKMNAGLK EYEIKSTLLGILSVQKSPTLDFIKADSLQLSYRSSAINQLIFAGIFKKEQGFNPNLVKLF KEMRENQPKDPSFGSCFKNPPNDFAGRLIESVGLKGVPFGANKTLMFSPKHANFLINLGK SSFDEALELILLAKDYVSKKHNITLQNEVQILQ >gi|197283028|gb|ABQU01000022.1| GENE 13 10195 - 10908 956 237 aa, chain + ## HITS:1 COG:Cj1172c KEGG:ns NR:ns ## COG: Cj1172c COG0217 # Protein_GI_number: 15792496 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Campylobacter jejuni # 1 236 1 234 235 253 66.0 2e-67 MGRAFEYRRASKEKRWDKMSKLFPKLGKAISIAVKEGGSGDPDMNSKLRTAIMAAKAQNM PKDNIEAAIKRALGKDGIQITEVNYEIKAPHGALFFVECATDNTTRTVANLKSYVNKFGG QMLTNNSLEFMFSRKAHFEVAKEGLGNLEELELELIDYGLESMEIEDEIVHIYGDYTSFG SLANALEKINANVKKAALERIANNPVEFSEEQLVDIEKLLDRIEDDDDVQAVFTNIA >gi|197283028|gb|ABQU01000022.1| GENE 14 11010 - 11330 558 106 aa, chain + ## HITS:1 COG:jhp1351 KEGG:ns NR:ns ## COG: jhp1351 COG0526 # Protein_GI_number: 15612416 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Helicobacter pylori J99 # 1 101 1 101 104 108 54.0 3e-24 MMNQLTKDNFHNETKEGVCLVAVGAPWCPDCKKIEPIMGMLMQEYAQKVKFGIVMADEQE ELKEQLNVRRIPTLIFYKNGTEVGERLVEPNSKAMIEDAIKKAIEA >gi|197283028|gb|ABQU01000022.1| GENE 15 11460 - 12899 1724 479 aa, chain + ## HITS:1 COG:Cj0131 KEGG:ns NR:ns ## COG: Cj0131 COG0739 # Protein_GI_number: 15791519 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Campylobacter jejuni # 35 476 31 453 457 315 40.0 1e-85 MQNQHKRDGFVKILGLVILIIFIGGGIFMLSSDKFEKESPKISIKEEAVWNLKDYFPIQI TDNSGIYNYTISLLLNQEKIPLQTQILSSKDSQCLNDGAELTPSQEIQESPKSLCIGIQK PKNIKNSTKEITLEIQATDTSKWNFFAGNTTTQTIHIPIDTKKPQLAILSHSYKITQGGS ALVVFRAIDDNLKQIRISNGKSDFFPQPFYKEGFYISLIAWDKNNSDFNAKIYVSDKAGN VSITPINFYLQKKQYRSSTIPLTDSFIDGKISTLVQEIGEKDLEDFPDKLSIFKYINEDV RKSNAAKVYEIASNYDRETLVENFSIQPFSPLKNGAVMASFGDHRTFNYQGQNVSESNHM GLDLASTKQAPILLSNPGVVTLSEFVGINGNTLIIYHGLGLSTLYAHLTSQNVNVGDTLN AGEVIAKTGNTGLALGDHLHFSVLVQGHEVWTAEWLDSHWIKANITDIINEAKLIINQL >gi|197283028|gb|ABQU01000022.1| GENE 16 12908 - 13486 657 192 aa, chain + ## HITS:1 COG:HP1053 KEGG:ns NR:ns ## COG: HP1053 COG0850 # Protein_GI_number: 15645667 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation inhibitor # Organism: Helicobacter pylori 26695 # 1 192 23 217 217 89 29.0 3e-18 MVQARQRNVRAFIFMQGEEEETIAYIQKNFILLKDFLLIFTYPLNDNLLKFLQTQNLNFV EYKNTSKLAQQESPQTQPIQNTQESAQEKTPETKTLTLHKTIRSGEEIITKGDITIFGRV NSGASIQAQGNVQIFGEINGNVFCNGSYMILGPTKEGNILFDGEIIDKEKLSSQGYKKIY KKNDTIVVEELL >gi|197283028|gb|ABQU01000022.1| GENE 17 13483 - 14376 1072 297 aa, chain + ## HITS:1 COG:jhp0373 KEGG:ns NR:ns ## COG: jhp0373 COG0774 # Protein_GI_number: 15611441 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-3-O-acyl-N-acetylglucosamine deacetylase # Organism: Helicobacter pylori J99 # 1 286 1 286 295 379 61.0 1e-105 MNEQTLSKPIELVGIGLHKGVPVKMRLEPLEEGSGIHFYRSDVGVNIPLKPENVVDTTMA TVIAKDGFKVSTIEHLLSAIHAYGIDNLRIVLDNEEVPIMDGSSIGYCMLIEEAGIQQQQ APKKVLKIKSPIEIKEGDKFVRLEPSEQCIFDFSIHFPHPAIGTQKYKFTFSTRNYKEEI ARARTFGFLSEVQYLRSQGLALGGSLDNAIVLDDTTILNKEGLRYKEEFVRHKILDAIGD MSLLGIPLLGAYVSYAGSHKLNHLLTKKIFEESQAYEIVQSSQPQKIYDYSLVYQNI >gi|197283028|gb|ABQU01000022.1| GENE 18 14385 - 14840 379 151 aa, chain + ## HITS:1 COG:jhp0374 KEGG:ns NR:ns ## COG: jhp0374 COG1214 # Protein_GI_number: 15611442 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Inactive homolog of metal-dependent proteases, putative molecular chaperone # Organism: Helicobacter pylori J99 # 2 151 3 165 165 87 31.0 7e-18 MLQIFIIPTSQPILIGLYKDYHLLEEYTLQAQLSESLIPFFSKLKQQKKDFESLYFVRGP GSFMALKLIYLFAKTMQITQNINLFGAIGFHFNENSPIKAYGNCYFIKEENQVILKNFST PPKTKPYALPKQLNPNFFSQEIEPLYLLPPV >gi|197283028|gb|ABQU01000022.1| GENE 19 14842 - 15723 766 293 aa, chain + ## HITS:1 COG:Cj0948c KEGG:ns NR:ns ## COG: Cj0948c COG0053 # Protein_GI_number: 15792277 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Campylobacter jejuni # 1 287 1 289 295 257 49.0 2e-68 MTIQKKATIISSLVASVLICVKFIVGILSGSIAVLASAIDSFLDLCASLFNLYAISKSEK PADLHFNYGRGKIESLAAVIEGSVICISGIFIFYQSCKKLIYGHQLELLTYSLGVMIFST FVTFFLVLYLSYVAKKSNNLVIKADALHYKTDILSNLAVLFALILVHFTGISEFDALFGI GIGIYIIYSAFFLLKSGVLILLDEALDDDILDSIKTILDSNKDIQSYHDLKTRQSGETYF VEVHLVFNPDISLLKAHDIADTIENSIKALRGNWIIITHLDPHDDGENNAIST >gi|197283028|gb|ABQU01000022.1| GENE 20 15707 - 17437 1513 576 aa, chain + ## HITS:1 COG:Cj0377 KEGG:ns NR:ns ## COG: Cj0377 COG0464 # Protein_GI_number: 15791744 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATPases of the AAA+ class # Organism: Campylobacter jejuni # 1 574 1 570 570 454 49.0 1e-127 MQYLLDFLQTNPINKTKIYPFLRCTKEEALILRYFCQEILKGNDEIICLDIINSLFTPNN DEEILKFLPLFKNLLDLGWLTQNIFLKNLSNEILFLELLNSAFSLSSSFLKLIQEGGIYP KLPKIIPYSDHLDYLKDQFLVIDLLSSLVPYKKDTLSSPLLEKGKQKIKSLQERIKQKLE LTKDKPALEILFKEYNLNLQEKIIFLALLKEEYSGKESQARELNALINLVSMNDYERIKN RALLDDRSKLVQKGLVNYDEILGNFSGINRTFFIPDEILKKITHPNNEEKRQKISLQSLI DEQDIFEFLQPKIPLSEVVLNPNTRETLETLLKQMDSKVLQNLKKWGIKDKKRGIDAKII FYGTAGTGKTLTALALAKSLKKSILSFDCSKILSMYVGESEKNVRKIFDTYKELCKESKE SPILLLDEADQFLSMRSTSASGADKMHNQMQNIFLEQIEKFDGILIATTNLLETIDTAFS RRFNYKIEFKKPNLEERLLLWEKLLPKNAPYEKNFNLKSLADFPLTGGQISLIIKNSAFL VAAQKSPLFTIQIFIDEIKRELNSNFDGQREMGFHI >gi|197283028|gb|ABQU01000022.1| GENE 21 17498 - 18832 1128 444 aa, chain + ## HITS:1 COG:jhp0450 KEGG:ns NR:ns ## COG: jhp0450 COG0733 # Protein_GI_number: 15611517 # Func_class: R General function prediction only # Function: Na+-dependent transporters of the SNF family # Organism: Helicobacter pylori J99 # 2 437 3 438 442 324 44.0 2e-88 MRFSKIGFILAAAGSAIGLGGIWKFPYMVGESGGGAFVLVFIIAFLIFGLSVFIVEMILG RASERDSFSTFYTLAPKDKKYLQYGGIMVFSGIMIFSFYVIVLGWLTHYMFLSITGMPKT LEATKSLWEHFIGEQIGYQLLWHFIIVALCAYVLNQGIKKGIERLNLILMPLLLIIFVGL LVYSMCQDSFMESFKFLFAPDFSKLTPQVIVDAIGQAFFALSLGVGVILTYANSLPKRGN FIRSAVIVALLNFFFCLMAGLVIFTFIFGYGAEPDSGTGLVFISLPLIFANMGISGQIIA FLFFVALIFAGITSAISMLEPLNAWLIDKFSFSRTKANLTSIGISYVLGILLLLSNSVLF GEHLSLLGKNLFGWFDYISASYMLPLAGVFMCLFVGWILPKNKVYAMCEGHLTGKIFHLW YFIIKYIAPLGILAAMITLAIGGF >gi|197283028|gb|ABQU01000022.1| GENE 22 18840 - 19169 468 109 aa, chain - ## HITS:1 COG:no KEGG:WS0805 NR:ns ## KEGG: WS0805 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 6 107 9 110 110 89 45.0 3e-17 MRIFCILLMAGSLYAQPWVMFNDMDDTYLYDQASGQVYIRVKKGGKNYEDTFVKMGVIDN LQNNSSKASLSAESIQDKNAKEASEDQRELLKKAQELQRSIQNGIFEGE >gi|197283028|gb|ABQU01000022.1| GENE 23 19226 - 19441 268 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309984|ref|ZP_04809139.1| ## NR: gi|242309984|ref|ZP_04809139.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 71 11 81 81 126 100.0 4e-28 MQKGYLLFFTTASAFEAEIVCKNLNLTFKLTPTPREFSSDCGIAIYFEVQNSQILQEALQ EANIEFEMKIL >gi|197283028|gb|ABQU01000022.1| GENE 24 19458 - 20618 965 386 aa, chain - ## HITS:1 COG:CAC2354 KEGG:ns NR:ns ## COG: CAC2354 COG0520 # Protein_GI_number: 15895621 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Clostridium acetobutylicum # 7 385 2 376 379 256 38.0 7e-68 MELPKFIYLDNAATSFPKAPGVKEAVCEFMEGIGSSPGRSAHTLSIESGRILYHTRRLLA DLLGLKDCKRVLFTLNATMAINTLLFGFLQKNDVVVTTSMEHNALKRPLNVLRERLNIEI REIPCTQFCELDLESTREILKGAKLLACAHINNVSGAMIPLDELSVLAKQEGVAFLLDAA QSVGCVEMHNVMEQVDFLALSAHKGLLSPMGVGALVMSDRVDTKSLSPLIFGGTGSLSEE EIQPMFLPDRFESGTPNMHGIAGLCAGLKWIESKGIGEIHRYEMKLREQLIQGLQKIKNL RIYEVKNPANATLSLAIEGKSVSEVGLRLDREFGICVRVGLHCNPATHKILGSFESGGSI RLSAGIFTTQEEIESCIAALATIAKN >gi|197283028|gb|ABQU01000022.1| GENE 25 20634 - 20846 234 70 aa, chain - ## HITS:1 COG:no KEGG:Sdel_0027 NR:ns ## KEGG: Sdel_0027 # Name: not_defined # Def: SirA family protein # Organism: S.deleyianum # Pathway: not_defined # 1 70 1 70 70 63 38.0 3e-09 MKQLDVRGLSCPEPVLNLKPLLEEGEDTIEVLCSCGASSDNIKRMASHYGYAVEVLKEEQ GEITYHLQKQ >gi|197283028|gb|ABQU01000022.1| GENE 26 20848 - 21906 426 352 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167854911|ref|ZP_02477687.1| ribosomal protein L11 methyltransferase [Haemophilus parasuis 29755] # 202 344 1 143 151 168 56 5e-41 MRLAIWPILAGVALGILAPILVSLGNPGNMGMCAACFTRDIAGGINLHQAPIVQYIRPEI IGLVFGALVASFAFGEFRPRAGSAPVVRFMLGFFAMIGALVFLGCPWRMWLRFSAGDFTA IAGIFGLVAGILMGIFFLKRGFSLGRSYPASKVVGFVFPLFVLGLFGLLLWGLVDSSAPV KFSEKGPGSQHAPLIISLVAGLFLGGIFQKSRFCMIAAVRDTILLKDTHILQGVIALVVA AFFTNLALGFFNPGFSGQPIAHNDWVWNFLGMLLSGFAFSLAGGCPGRQLVLSGEGDSDA GVFVFGLLMGAAFAHNFSLASSANGIGANAPIAVFVGIVFCLLVALFARERR >gi|197283028|gb|ABQU01000022.1| GENE 27 22094 - 24175 2647 693 aa, chain - ## HITS:1 COG:HP1195 KEGG:ns NR:ns ## COG: HP1195 COG0480 # Protein_GI_number: 15645809 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Helicobacter pylori 26695 # 1 693 1 692 692 1241 89.0 0 MARKTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERG ITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVAVFCSVGGVQPQSETVW RQANKYGVPRIVFVNKMDRIGANFYNVESQIANRLKARPVPLVIPIGAEDTFKGVVDLIQ MKAIVWNDESMGAKYDIEEIPADLVEKANEYREKMVEFAAEQDEALMEKYLGGEELSTEE IKAAIKKGCLAMEIIPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVADIRGVDAKDEEKEI SVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGSLESGSYVLNSTKGKKERVGRLLKMH SNKREDIKEVYAGEICAFVGLKETLTGDTLCSEKEPVILERMEFPDPVISIAVEPKTKAD QEKMALALAKLAEEDPSFRVHTDEESGQTIISGMGELHLEIIVDRLKREFKVEAEVGQPQ VAFRETIRQSVEQECKYAKQSGGRGQYGHVFIRLEPQEPGKGYEFVNNISGGVIPKEYIP AVDKGIQEAMQNGVLAGYPVVDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKDACRKAGAV LLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRMGLKIVNAFVPLAEMFGYSTDLR SATQGRGTYTMEFDHYGEVPSNISKEIMEKRNG >gi|197283028|gb|ABQU01000022.1| GENE 28 24249 - 24716 786 155 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239523287|gb|EEQ63153.1| 30S ribosomal protein S7 [Helicobacter pullorum MIT 98-5489] # 1 155 1 155 155 307 100 9e-83 MRRRKAPQREVLGDPIYNNIVVTKFINKMMYDGKKSVAEKIIYATFDKIEEKTKEKGIET FQKALEKVKPLVEVRSRRVGGATYQVPVEVRPARQQSLSIRWLLDSARKRNERTMIERLA NELIDAANERGAAFKKKEDVHKMAEANKAFAHYRW >gi|197283028|gb|ABQU01000022.1| GENE 29 24729 - 25118 650 129 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|224418577|ref|ZP_03656583.1| 30S ribosomal protein S12 [Helicobacter canadensis MIT 98-5491] # 1 129 1 129 129 254 99 5e-67 MPTINQLIRKERKKVIKKSKSPALVVCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTSG FEVISYIPGEGHNLQEHSIVLIRGGRVKDLPGVKYHIIRGALDTAGVAKRTVSRSKYGAK KAKSGDSKK >gi|197283028|gb|ABQU01000022.1| GENE 30 25214 - 33859 10046 2881 aa, chain - ## HITS:1 COG:HP1198_2 KEGG:ns NR:ns ## COG: HP1198_2 COG0086 # Protein_GI_number: 15645812 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Helicobacter pylori 26695 # 1375 2879 2 1507 1515 2264 75.0 0 MPISLKSGNRLRVDFTKIPQNIAVPNLLQLQRSSYEAFLKSQDNNESGIEKVFKSIFPIH DTQNRISLEYAGCEYGKPRYTVREAMERGLTYSIPLKIKIRLVLWERDEKTGEKLGVKDI KEQNIFVREIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEESSTASNKLVYTGQIIP DRGSWLYFEYDAKDTLFVRVNKRRKIPVTILFRALGYSKQDILKMFYPLLTIKHKSGKYF IPFDPEEFIGRVDFDIRDTKGKLILAAGKRLTAKKAKALKEEKLNMIEYPIDILANRYLA EPIIDKESGEILFDALTLMDDSKLKKLAELGINEFVIANDLASGVDSSVINAFIADAESL KLLKQTEKIDNENDLATIRIYKVMRPGEPVTKEAAKQFVQQLFFDPERYDLTRVGRMKMN HKLDISVPDYVTVLTHEDIIKTVRYLIHVKNGQGRIDDRDHLGNRRIRAIGELLANELHL GLVKMQKAIRDKLSTISSGLEELMPHDLINSKMITGTILEFFTGGQLSQFMDQTNPLSEV THKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLSTYAKVNEL GFIEAPYRKVVDKKVTDEIVYLTATQEEGAVIAPASTVLTNDNVIKEDIIEVRKDGEIIL MESSKVELIDLSPRMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLCPDAPVVGTGI EKIVSRDSWESVKATRGGVVEKVDAKNIYILGEDENGAFIDHYSLQKNLRTNQNTSFSQK PIVKAGDVVQAGDVIADGPNMDKGELALGKNIRVAFMPWNGYNFEDAIVVSEKLICNDAF TSIHIYEKEIEARELKHGVEEITRDIPNIREEELAHLDESGIVKIGTYVTGGMILVGKAS PKGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSLEGTVVDVKIFTKKGYDKDKRAIVA YEEEKARLDLEHHDKLLMLDREESLRIGSILSKEKLASNVKIGDKEYKKGSVIPKEDLEN VNRFVMGTIIKGYSKEIQSKYDALKANFLEQKKNLSQEHEEKLSIIEKDDILPSGVVKLV KIYVATKRKLKVGDKMAGRHGNKGIVSNIVPEVDMPYTKDGRPVEIVLNPLGVPSRMNIG QILEVHLGLVGKNLGEQISLVFEEEKGKWIGKLRDKMQEIAETSGMKEIKTFLNSLSDED LLTYARDWSKGVKFATPVFEGVNAKEFEKLFALAKIDSDGKTELYDGRTGEKMMERVNVG YMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK EMLTIKSDDVEGRVKAYKAITRGESVKESEIPETFYVLTKELQSLALDVNVFAKNKEGVN EPILIKEDNRPSDFNAFQLLLASPEKIRSWSHGEVKKPETINYRTLKPERDGLFCAKIFG PVRDYECLCGKYKKMRYKGIVCEKCGVEVTSSKVRRSRMGHIELVTPVAHIWYVNSLPSR IGTLLGVKMKDLERVLYYEAYIVKQPGEAFYDNEGTKPVAKYDVLNEEQYQNLSQRFEHT GFVAQMGGEAVKELLEGIDLVDLIAELKEAIKTTNSEAKKKTIIKRLKVVESFVVSGGQN RPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNQRLKRLIELDAPEIIV RNEKRMLQEAVDALFDNGRNANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGR SVIVVGPNLRMDQCGLPKNMALELFKPHILSKLEEKGYATTLKQAKKMIERKSSEIWECL QESVEDYPVMLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCAAFNADFDGDQMAVHVPL SQEAITECKLLMLSSMNILLPASGKAVTVPSQDMVLGLYYLSLEKDNSKGEHKLFSNIDQ IHIALEAGVVEISSKVRVYVEDRIVNTTIGRMILKSILPDFVPMHLWNKVLKKKDIATLI DYVYKEGGVGITASFLDNLKNLGFKYATKAGISISADDIIVPSNKNKVIEGAKKKVKDIQ AQFGAGLLTEQERYNKIIDVWTDTNNALGNEMMKLIENDKAGFNSIYMMADSGARGSAGQ IRQLSAMRGLMAKPDGTIIETPITSNFKEGLNVLEYFISTHGARKGLADTALKTANAGYL TRKLIDVSQNVKIVMDDCGTNEGVEITDITIGSELIESLDERIFGRVIAENIIDPITNEV LISEGVLIDEEKARKVKEAGVKSVIIRTPVTCKAEKGVCAKCYGLNLGESRISKMGEAVG VVAAQSIGEPGTQLTLRTFHIGGTASRSQEERQVVADKEGFIRYYNVKTYKNREGKRIIS NRRNAAILLVEPKIKAPFEGELKVDIVHDEVIISVIGKKETAKYTLRKSDVAKPNELAGV TGKIEGKFYIPYPSGHYVRDEGSIVDIIKDSWNIPNRISYASELKVEDNAPITQKIYAKE EGIVKYYYLQGDHLERYRALKKGEKITEKGVFAVVADEYDQEAARHYIARDSVIEVEDNQ RVTKSTLIASPENDEQIVIADWDPYSNPIISEEAGTIKFEDIIPGLTVSEQTDELTGQTR LVVNEYIASAYKPTLVLSTAKGGLIRYALDPKTAIFVADGAQVEMADILAKTPKALVKSK DITGGLPRVSELFEARKPKDPAVLAEIDGIVSFGKPIRGKEKIIITANDGRVAEYLIDKS KQILVHDGEFVHAGEAMTDGVVASQDILRIGGEKELYKYIVSEVQQVYRRQGVSIADKHI EIIVSQMLRQVRIYDSGNTKFIEGDLVSKRHFREENARIIRMGGIPAIAEPVLLGITRAA IGSDSVISAASFQETTKVLTEASIAAKIDNLEDLKENIVLGRMIPVGTGIYKSKKVKIKE N >gi|197283028|gb|ABQU01000022.1| GENE 31 33935 - 34312 605 125 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239523290|gb|EEQ63156.1| 50S ribosomal protein L7/L12 [Helicobacter pullorum MIT 98-5489] # 1 125 1 125 125 237 100 9e-62 MAISKEEVLEYIGNLSVMELSELVKAFEEKFGVSAAPTVVAGGAVAGGAAGGGEEKTEFD IILADSGDKKINVIKVVREVTGLGLKEAKDAVEKTPFTVKEGVKKEDAEAIKAKFEEAGA KVEIK >gi|197283028|gb|ABQU01000022.1| GENE 32 34332 - 34814 790 160 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239523291|gb|EEQ63157.1| 50S ribosomal protein L10 [Helicobacter pullorum MIT 98-5489] # 1 160 1 160 160 308 100 3e-83 MTKAEKSALIEKLTTEFKASKAIAVCDYKGLTVKELEALRADIRSQNAKVQVIKNTLASI ALKNSNIEGLELRENNIFLWGEDQISLSKAVCKFSNSVGGKLIIKAGYYEGALVDAKHIE AVSKLPSKEELIGMLLSVWTAPARYFVTGLDNLRKQKESE >gi|197283028|gb|ABQU01000022.1| GENE 33 34910 - 35614 1158 234 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239523292|gb|EEQ63158.1| 50S ribosomal protein L1 [Helicobacter pullorum MIT 98-5489] # 1 234 1 234 234 450 100 1e-126 MAKKLTKRMQNLLEKVDCKKIYDITTASATVKSLASAKFDETVEIALSLGVDPRHADQMI RGAVVLPNGTGKNVRVAVFAKGVKADEAKAAGADIVGDEDLAEQIKAGDLNFDMVIATPD MMALVGKVGRILGPKGLMPNPKTGTVTMEVSKAVSNAKSGQVNYRVDKKGIVHAPVGKVS FDAKKLEENIIALVRNINRQKPATAKGKYIKNATLSLTMSPSLKLDTQELIDMK >gi|197283028|gb|ABQU01000022.1| GENE 34 35638 - 36063 710 141 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239523293|gb|EEQ63159.1| 50S ribosomal protein L11 [Helicobacter pullorum MIT 98-5489] # 1 141 1 141 141 278 100 6e-74 MAKKIIGELKLQIPAGKANPSPPVGPALGQRGVNIMEFCKAFNEKTKDMGDFNIPVLITV YQDKSFTFVTKKPPVTDLIKKAAGIQKGSDNPLKNKVGKLTKAQVMEIVKTKMDDLNANS EEAAIKIIEGSARSMGIEVVE >gi|197283028|gb|ABQU01000022.1| GENE 35 36086 - 36616 697 176 aa, chain - ## HITS:1 COG:jhp1126 KEGG:ns NR:ns ## COG: jhp1126 COG0250 # Protein_GI_number: 15612191 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Helicobacter pylori J99 # 5 176 4 176 176 266 78.0 1e-71 MALYWYAIQTYFGSEQAVKRGIENLVKEHHLEERLTDIVVPTEDIIEVKNNKKKISERSL YPGYVFIRVDLDTALWHTIQSLPKVSRFIGEAKKPTPLSEADINHIIEKVQNRAAPKPKI IFEAGEVVRIIEGPFANFTGTVEEYDMEHRKLKLNVSIFGRSTPIEILYSQVEKIV >gi|197283028|gb|ABQU01000022.1| GENE 36 36633 - 36812 126 59 aa, chain - ## HITS:1 COG:HP1203a KEGG:ns NR:ns ## COG: HP1203a COG0690 # Protein_GI_number: 15646210 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecE # Organism: Helicobacter pylori 26695 # 1 59 1 59 59 61 67.0 3e-10 MKKLINYYRLSREELSKVIFPTKEQVRNAFISVIMVVTIIALFLALVDFILGSFVSSIL >gi|197283028|gb|ABQU01000022.1| GENE 37 36830 - 36901 62 23 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVERRSPKPSVGGSSPSWPAILE >gi|197283028|gb|ABQU01000022.1| GENE 38 36947 - 37117 295 56 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|224418585|ref|ZP_03656591.1| 50S ribosomal protein L33 [Helicobacter canadensis MIT 98-5491] # 1 56 1 56 56 118 100 8e-26 MAKGNRVKIGLKCSECGDINYSTVKNAKTQTEKLELKKFCPRLNKHTIHKEVKLKS >gi|197283028|gb|ABQU01000022.1| GENE 39 37126 - 38325 1508 399 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 399 1 407 407 585 71 1e-166 MAKEKYVKSKPHVNIGTIGHVDHGKTTLSAAISAVLSTKGLAEMKDYDNIDNAPEEKERG ITIATSHIEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI LLSRQVGVPYIVVFMNKQDMVDDPELLELVEMEIRELLSSYEFPGDDTPIIAGSALKALE EAKAGSLGEWSEKIMKLMDAVDEYIPTPVRETDKTFLMPIEDVFSIAGRGTVVTGRIERG IVKVGDEIEIVGIRPTQKTTVTGVEMFRKELDQGEAGDNVGVLLRGTKKEEVERGMVLCK PGSITPHKKFEGEIYVLSKEEGGRHTPFFNGYRPQFYVRTTDITGSIALPEGVEMVMPGD NIKITVELINPIALEEGTRFAIREGGRTVGAGVVTKIIE >gi|197283028|gb|ABQU01000022.1| GENE 40 38411 - 38533 83 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLFIFVCPYSSVAEHFLGKEEAGGSIPLMGSSFSEIVIEL >gi|197283028|gb|ABQU01000022.1| GENE 41 39064 - 41046 2049 660 aa, chain + ## HITS:1 COG:FN1971 KEGG:ns NR:ns ## COG: FN1971 COG1629 # Protein_GI_number: 19705267 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Fusobacterium nucleatum # 42 660 20 657 657 134 25.0 7e-31 MKSHKNLQPRGFRKKYFSLAAILMLNSTLIAQSQNIALNEKSSETKEQSLKLSIIHADEF VENTDFKEEFSAEEIKQSNAQNIYEFLELHSLLKITSNYGNPYTQNIDLRGFGQNGHKNL AIIVDGMRLNNIDSTPISLSAIPLDSIQKIEIIRGKGTTKYGNGAVSGVLKITTTRKAGG EINLSYASYDTFNSQFFARHAGDNLNIGLYGQYQNSQGSRRISPDSDEKDGSYNKNGGIT LFYYPDDSLLLRANMNYSKYGIKYANPLTKEQFDSNPTQAPISSWGDTFTHQKRWDLYHN VGLTYFANNGLVTEVNFGGNRNESEYINFANLYEGKGLYGNFNSQYKNDSYLAEIGGEIK QNQRSSSTAKAQVSEILLYLNGEKYFEDSTLNLGISAQRVINQQKGDGTYSTQENLIGGE LGYNYQIHPLINLFASYSRTFATPNVDWLLRYDPITYAPMLNTLAKTATFDTFQIGSKAV FGIHELSGNIFYIHGNDEAYYGLNKITGIYDNQTLGETRRTGGELKFTTYFSQNLFSTLS YAYVDATMQGNEGYKGNTIPGVSKHTFIIGLNYLPIPNLNLGISYKYASKAYDYNDFDNT LEKMPNYQSLNVTLSYTLKDFEIYAFANNLTDHKNALVVSGGYYPYEFETIFGGGVKYKF >gi|197283028|gb|ABQU01000022.1| GENE 42 41046 - 41621 324 191 aa, chain + ## HITS:1 COG:no KEGG:WS1231 NR:ns ## KEGG: WS1231 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 3 188 4 189 191 135 48.0 1e-30 MEHFTFKTYLSYKFLNSLFGSASLGTIFTIYAILPPKTFSIGGITLALGAWILTFFYTQL LKTKPYKIILLMIEILPFCYLAAYLLFPNTFYGAILIYALYQIGFIFGDYLSRNETLIFH TKDYLSKIDKARQIGYLSGLSLAFIFYFILEKFGIDSKEAQIYNIHFLLLLLQCLVILTL ILSFKGKSCKT >gi|197283028|gb|ABQU01000022.1| GENE 43 41564 - 42289 513 241 aa, chain + ## HITS:1 COG:Cj1208 KEGG:ns NR:ns ## COG: Cj1208 COG0212 # Protein_GI_number: 15792532 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Campylobacter jejuni # 71 231 43 200 208 105 43.0 8e-23 MLGYFNPYSFIQRKILQNLKESYRKNCKASLEKIKASNQTRILDYKLQKQLKILLDSLIS LHQKTSKTPLNILFYYPLENEFNCKKLLNAYRKQKKIQIFTPFMCGISFKIVKYRLPLQK KVFGIYESYNSSFKVNKIHIAIIPTLGIDKNFKRIGFGKGMYDRFFETLKQKPINIFICR ATHYNHQIITQPHDIQANFFITPFVSLKLEDKKYDNLDYNKLRFISLSRWRWKLPYFTQT F >gi|197283028|gb|ABQU01000022.1| GENE 44 42204 - 43775 2105 523 aa, chain + ## HITS:1 COG:Cj1209 KEGG:ns NR:ns ## COG: Cj1209 COG1418 # Protein_GI_number: 15792533 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Campylobacter jejuni # 11 523 9 517 517 519 59.0 1e-147 MITWIIISSALSALVAGGGSYLISRKLSNANLEVLLEQSKAKAKAIEYEAEKILQESRIK AKELEIESQQKYEREAAKIIKEYENNLLELEKVKLKENQQIEREYCKLEQEKQLIRRDKN NLSQERESLKKLKNNYQEKLEELTHHLTAVNSITKNEAKKLLFEKITEESRQEIAQFLRK IENQAKEEAKAKATYILAQATSRFAGEFAAERLIHTIILPNDEMKARIIGKEGRNIKTLE MICGVDIIIDDTPGVIIVSSHNLYRRSIAVQTIQRLIEDGRIQPARIEEIYQKCYDEFEQ NIFEEGQRVTLDLGLGNIHPDIQKLIGKLRYRASYGQNALAHSLEVANLAGIIAAELGGD CLLATRAGLLHDIGKARTHDFKGSHVELGAEIARRYNEHPVVLNAILSHHGDEEIKSIEA AAVCAADSLSAARPGARREVLENYLRRVSEIERIALSKMGVLHAYAINAGREVRVIVKSE DISDDESYLLAREIAKDIEASVQYPGEVKVSVIRETRACAIAE >gi|197283028|gb|ABQU01000022.1| GENE 45 43779 - 44828 893 349 aa, chain + ## HITS:1 COG:FN0546 KEGG:ns NR:ns ## COG: FN0546 COG0859 # Protein_GI_number: 19703881 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Fusobacterium nucleatum # 31 314 1 283 335 67 25.0 3e-11 MKAVYTFLTNLWVKFYLKKNPIIKLPKPTKLENIQSIVIFSNTALGDTLMRTPAIVATRE AFPNAKIALFIAKNIYPLFKDYEFVDDFILYDKGYKGFLKNIFQIRVLKPDLILMYHSNG PQDIPTAILSGAKYILKTPRNGKHESLLSTKLSRDMAAHFIPLSLKTLEYITLKENSNIT MKLPSKYHDFIAKKALGDGLRIGFQMRTSKPQREWGVENFAKLAQEILGHFTNAEIFLSG TNQEKIYCEKIYSLLPSNLHNKVHNVCGKYKIDELPFFLKSLDCLITGDTGPMHLAGALK IPSVALFLGGANPKTSGILQDKEIHIEICQEKSITPTEVLKAMQQLIKN >gi|197283028|gb|ABQU01000022.1| GENE 46 44845 - 45012 66 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVTYNNFNIHLKPLELILNFEIIPEKESKRVKKFYKITLYLVKIYLWLFMENKKP >gi|197283028|gb|ABQU01000022.1| GENE 47 44983 - 45933 437 316 aa, chain + ## HITS:1 COG:no KEGG:HH0206 NR:ns ## KEGG: HH0206 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 311 1 308 310 248 42.0 2e-64 MDIKIVVCYHKLEPLIGNKFIFPILVGAKNISENIISIFNRKAIRQKLTPLRDDTGDNIS ELNPNYCELTAIYWMWKNLKADYYGLFHYRRIFDFTNPHHNQQLIQNNIPHQIAFRFIKK ITRKLLNQNKILKACQEFDIILPIKANYFLKGDTTLYQLYAKDHYQNDMDLCINYIRAKY PHMQNALENTLYKSPVNWYVANMFVTKKELFFEYCEWLFDVLFSIAPNVPIESYNQYQAR VFGFLSERLFNIWIEYKKETTPSLRIKEYPLIRLEKTPLYYPLINIRTQTKNKGETKTKR LFICGIRVWKKEIKDN >gi|197283028|gb|ABQU01000022.1| GENE 48 45935 - 47041 697 368 aa, chain + ## HITS:1 COG:MTH344 KEGG:ns NR:ns ## COG: MTH344 COG0562 # Protein_GI_number: 15678372 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-galactopyranose mutase # Organism: Methanothermobacter thermautotrophicus # 4 362 3 376 380 329 43.0 5e-90 MKAKNLIVGAGLSGIVLAERLANSGEEVLIIDKRDHIGGNCYDYDENGILVHKYGSHIFH TNNEKVWKYLNQFTTFYPYMHKVLASIEGHFAPVPFNLNTLHQIFPQTIALELENILLNS YQYGTKISILELKQREKLKFLADFIYEKIFLHYTLKQWQCDPKDLDNKVFDRVPIAISKD DRYFYDTYQGIPFDGYTAMCKNMLKSPLITIKLETDFNDIKSKITYQRLFYSGGIDEFFN FKFGELPYRSLSFDFKQLEKPYFQNNAVINYPNNYDFTRISEYKYFLDSKTNHTIISFEY PKTWKLGDERYYPVPNQHSNKIYNLYKKEADKLINTYFIGRLGTYQYLDMDDTIETTLQL FDSLKLSN >gi|197283028|gb|ABQU01000022.1| GENE 49 47063 - 47908 293 281 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310008|ref|ZP_04809163.1| ## NR: gi|242310008|ref|ZP_04809163.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 281 1 281 281 370 100.0 1e-101 MLTYKSLYALFKSYYYLLYLSWIPLIIAKYFYHPHNQPYNIFLALTAVGIFIPTIIDLLK IINQLLRYFKKLQYILYMLCFIISYIIYGISTTLSKEYISLILKVSPDSYIDTIYWFSLY FSFIIVSSLIMLFFTVIPTLYLTITILIDSLLNLLHALYSPLGNFFKSQVNKISMNIREF FGFYNTMHFLFFIFTAIFFIVISLSYIPISTINFVEKNSLYIIHYTSYFQNYNTCKNVDS NAYIKLLGDNQASISPFKDKSLSLLITNNSTKNNFYTTTCN >gi|197283028|gb|ABQU01000022.1| GENE 50 48089 - 48740 611 217 aa, chain + ## HITS:1 COG:YPO0187 KEGG:ns NR:ns ## COG: YPO0187 COG0463 # Protein_GI_number: 16120528 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Yersinia pestis # 3 213 17 213 329 94 33.0 1e-19 MESYLHKCLDSIVSQTYKNFEVICVNDGSTDKSLEIAKSYADSDSRFTLTSQTNQGLSIT RNKALDIAKQKWLESSQEEQEQTYITFVDSDDYLEDFALEHIATILNQNKVDIFITNTFF KVSPATQTKTLRQQLVFPSNLENQTFTPSELCKLTPKSILTSTVAFIHKATHLFSHNIHF IEPHILHQDIAFCTHSTLLASSIRTDSTPFYNYVQSE Prediction of potential genes in microbial genomes Time: Tue May 24 02:11:33 2011 Seq name: gi|197283027|gb|ABQU01000023.1| Helicobacter pullorum MIT 98-5489 cont2.23, whole genome shotgun sequence Length of sequence - 13331 bp Number of predicted genes - 15, with homology - 14 Number of transcription units - 4, operones - 4 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 8 - 337 228 ## gi|242310009|ref|ZP_04809164.1| predicted protein 2 1 Op 2 . + CDS 419 - 1504 719 ## COG0438 Glycosyltransferase 3 1 Op 3 . + CDS 1521 - 2639 648 ## Arnit_2692 group 1 glycosyl transferase 4 1 Op 4 . + CDS 2675 - 2908 286 ## gi|242310012|ref|ZP_04809167.1| predicted protein 5 2 Op 1 . - CDS 2915 - 4012 839 ## COG0438 Glycosyltransferase 6 2 Op 2 . - CDS 4022 - 4708 778 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 7 2 Op 3 . - CDS 4750 - 4989 386 ## gi|242310015|ref|ZP_04809170.1| predicted protein 8 2 Op 4 3/0.000 - CDS 4982 - 6040 1180 ## COG2404 Predicted phosphohydrolase (DHH superfamily) 9 2 Op 5 . - CDS 6054 - 8258 2594 ## COG1298 Flagellar biosynthesis pathway, component FlhA - Prom 8347 - 8406 9.8 + Prom 8014 - 8073 2.9 10 3 Op 1 . + CDS 8149 - 8568 72 ## 11 3 Op 2 . + CDS 8472 - 8747 449 ## PROTEIN SUPPORTED gi|239523315|gb|EEQ63181.1| 30S ribosomal protein S15 - Term 8726 - 8771 2.0 12 4 Op 1 1/0.000 - CDS 8819 - 10600 1463 ## COG1200 RecG-like helicase 13 4 Op 2 3/0.000 - CDS 10624 - 11865 1306 ## COG0612 Predicted Zn-dependent peptidases 14 4 Op 3 2/0.000 - CDS 11920 - 12993 1079 ## COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes 15 4 Op 4 . - CDS 13013 - 13330 296 ## COG4775 Outer membrane protein/protective antigen OMA87 Predicted protein(s) >gi|197283027|gb|ABQU01000023.1| GENE 1 8 - 337 228 109 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310009|ref|ZP_04809164.1| ## NR: gi|242310009|ref|ZP_04809164.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 109 1 109 109 194 100.0 2e-48 MRTKPSIIRCQKRAHAYFTTLKYLDNLKSQFQDENILNFLNNSCKWVMEKALKFLQRGGY NVAKITKQELLEYKQYASKKRILCIYFPRLYSIPKYIRLKLQGKNIYLD >gi|197283027|gb|ABQU01000023.1| GENE 2 419 - 1504 719 361 aa, chain + ## HITS:1 COG:HI1698 KEGG:ns NR:ns ## COG: HI1698 COG0438 # Protein_GI_number: 16273585 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Haemophilus influenzae # 4 359 3 353 353 119 26.0 1e-26 MKPKIFLLISDITTFGGMQRVVSNLCNLLCSHYEITLISCYKANETLPATYNFPTNVKII YFNEIYPDFKLDSFWDKVKFSYRINQLLPNGSKNILIVNNLLYPFFKKKNTIYIRLFHNS FENAYKKYLYKKPLFPPRIALFDKLIVLSSKELNHWQKLHKNIEVIPNFLPSIPKESSPL QSKIVLSVGRMDKGDQKGFFRLVDIWEIVQKDSRFGEWKLHIVGDGLLKEQIEEKIKAKN LQDSIILKPFTNQIEQEYLQASIYAMTSLFEGLPMVLVESASFGLPQISFDINTGPSDII ENEKSGFLIPDGDLEGYAEKLKALMQNQNLRESMGKRAKEIAQEKFSKEAILLKWQKMFN N >gi|197283027|gb|ABQU01000023.1| GENE 3 1521 - 2639 648 372 aa, chain + ## HITS:1 COG:no KEGG:Arnit_2692 NR:ns ## KEGG: Arnit_2692 # Name: not_defined # Def: group 1 glycosyl transferase # Organism: A.nitrofigilis # Pathway: not_defined # 2 330 3 333 370 108 24.0 4e-22 MRILCITDKQYNEEETAIKGIFEKYILQYCEVYSVYFTKEKQAYLQDKKFVFPYSTKHRK FIKTLMQLNFNLLDFDLIIVRNFYPIAKQLLPFHPKILFWETFPHDYRRIYEAKRDKKAI WRKSIEYKIKYYLHAKILEKCAGYITMTPQLQSQFQPQLKIPIHIIPSGIDFENCDLNAI QQNLQNIHTPLKFLYIGTIDKNRQILEIITSISHTKGDFILDIFTPSNNKETQAIAQLSQ KDSRIKLYPPLSFTEMLKTIPNYDIGLGIIPNTPLYSVSSPIKAMEYASNGVIPLINDLP EYLRLFDGNTAFFTTLNSNAISNTLTQILSTPPTILKAKKQALFKLAKEKMDYQIIARQT YEFLKSILQRNP >gi|197283027|gb|ABQU01000023.1| GENE 4 2675 - 2908 286 77 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310012|ref|ZP_04809167.1| ## NR: gi|242310012|ref|ZP_04809167.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 77 7 83 83 149 100.0 7e-35 MEAWIHSPYNRIYRSELCHYHFPYVKTSRQHLAKNGIPLKEFLNSGDSSLGTEIDLKMLD EDYILSLYKRFDFSKEN >gi|197283027|gb|ABQU01000023.1| GENE 5 2915 - 4012 839 365 aa, chain - ## HITS:1 COG:XF1470 KEGG:ns NR:ns ## COG: XF1470 COG0438 # Protein_GI_number: 15838071 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Xylella fastidiosa 9a5c # 4 329 1 331 376 83 24.0 8e-16 MKKIKVLHTEWSSGWGGQEIRIISEMEMMRNLGCDLALACREDSMILPKAQEKGFKTYVL PFARKSDFKTMWEIAKILRNEKYDIINTHSGIDTWCGGLGSLLSGAKFIRTRYLSTPIHP SRWNFINNLADFIMTTGESVRETMIRDNRINPTKIMSIPTGIDMGIFDKAKYNKDTMKEK YKIPKDKIIIGNLGVLRYFKRQDIFIHIAREIHKKYPNTCFVIAGDGDGKEGLKNLVVGG GEIEDASEYIKLLGHVANPAEFLSTLDVFMLTSDSHEGVPQSLMQALAMEIVSVASDIGS IRDLHNGSNFVLTANPNKEEFLEALEGILRGDLKVKPSREFIIDNFSKEVMGERIAEVYW KVLER >gi|197283027|gb|ABQU01000023.1| GENE 6 4022 - 4708 778 228 aa, chain - ## HITS:1 COG:Cj0187c KEGG:ns NR:ns ## COG: Cj0187c COG0299 # Protein_GI_number: 15791574 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Campylobacter jejuni # 10 223 4 185 188 181 47.0 9e-46 MKEENMKVRKIAILFSGNGSNLESLIRCLHKKYFKRLGEFSLKDSQARGFLIGGIESEFV ETDKEDKEAFGVEVVLALSNKANAYGLERAKNLGVKTQVLESVKFARREDFDRELVGILK QYSLDLCVLAGFMRILTPIFTQAVQAVNIHPSLLPLFKGANGIKESFESQMKLGGVSVHW VSDELDSGEIIAQGVVEKDKDLENYESKIHKLEHYLYPLAVLEALKKV >gi|197283027|gb|ABQU01000023.1| GENE 7 4750 - 4989 386 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310015|ref|ZP_04809170.1| ## NR: gi|242310015|ref|ZP_04809170.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 79 2 80 80 101 100.0 1e-20 MSKERIKELEEMNEELSIQLSDMLCAVLKLSGVAESKMQEALDAYIEALDEESLEYGVKE ILDNIENLKKNKPELFGKK >gi|197283027|gb|ABQU01000023.1| GENE 8 4982 - 6040 1180 352 aa, chain - ## HITS:1 COG:jhp0382 KEGG:ns NR:ns ## COG: jhp0382 COG2404 # Protein_GI_number: 15611450 # Func_class: R General function prediction only # Function: Predicted phosphohydrolase (DHH superfamily) # Organism: Helicobacter pylori J99 # 1 346 1 344 347 359 54.0 4e-99 MNLYHLSHIDLDGYGCQLVSSEFYKTRASKIFFYNANYGKEVLARLEQIVRDIKNNKEES HILISDLNLTMSECDELKKEILELNLSGYQVSYELLDHHKSGQECANKYEWYVLDTKRCA TKIVYDTLLGRFGLDESVRKWLEPMVEMINSIDLWNEEGFAFEFGKVAMRLIVECKELNR FMFDDEDRAYKLSLLRESSRFLGEERGHILLDNAILEMKKCYLNGSLLSDTLDNLISHFQ NKLLGQKASECTLYCGEYRGFLSYGVGNISVLANLFLKTHTEFDFFLDVNARGNVSLRAN GNCDVSVIAKKFFNGGGHFNASGGKIDNFKESFIYADIKEAIEQIFRGENDE >gi|197283027|gb|ABQU01000023.1| GENE 9 6054 - 8258 2594 734 aa, chain - ## HITS:1 COG:HP1041 KEGG:ns NR:ns ## COG: HP1041 COG1298 # Protein_GI_number: 15645655 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhA # Organism: Helicobacter pylori 26695 # 4 730 23 729 733 677 56.0 0 MTGSKDLTVVFFIIAILAIIIVPLPSALLDFFLAISIALSALIILIALYVKKPTDFSAFP TLLLIVTLFRLSLNIATTRMILSNGHLGPEAVSDIITAFGQFVVGGNYVIGIILFIILVI INFMVVTNGSTRVSEVKARFTLDAMPGKQMAIDADLNTGLIGQEEAKARRDELAAEADFY GSMDGANKFVKGDAIAGIIITLINIIGGFLIGVFQKDMSVADAASTFTILTIGDGLVSQL PALIVSTATGIIVTRFSKEGENFASGIVDQLINESKTLMIVGCILLLFALVPGLPTISLG FVGLLFLTLALLLNKQKDGEAWKYVESLFKKVRKGKAEEGQAPLPQRQTQRASGGQTPQN AQQAAPKPQPQESEEERRKREEAEIDKALKVKILRVGLGYQLIKFADPAQGGELVNKIRA IRKTMATEYGILVPMVHLRDDLNLAPDEYQILLKEIEIGKGKIMVDKYLAIASSGFVGEL PDGIPTKEPVFGLDAYWIDEDKKEDAIIEGYTIIDGATVISTHIQELIKQYAEELLTRQE VANLVAKLGQDYPILAEEIKGVGIGTIQHILKELLHEQIPIKDMLSIAEAIADGYPAYKA DLPTLSEYVRACLKRLITHNFQSDDGVLKYFVLSPSLEQFLLEKLPDQQKIGQRLRLSPT ESQSLLDAINVAYQKGVSMGAVPTIIGGVPMVLRKPLAIFLEQYGFGRNIVVLSTAEIDY QSKFEILGSIEFPI >gi|197283027|gb|ABQU01000023.1| GENE 10 8149 - 8568 72 139 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEIARKKSNNALGRGTMIIAKIAMIKKTTVKSLEPVNCDKKGEILPQKEVFCPAFAKNAP FQKLNKVCNFNRFYPIKSRNFKKFTLFKIFYARIAPLKILKLPIRRSLWLKIRRKKEKLL LLLLEIQKIQALLKCKWHF >gi|197283027|gb|ABQU01000023.1| GENE 11 8472 - 8747 449 91 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523315|gb|EEQ63181.1| 30S ribosomal protein S15 [Helicobacter pullorum MIT 98-5489] # 1 91 1 91 91 177 100 4e-44 MAQDSAKKREITSAFARNPKDTGSVEVQVALLSDRIKTLTEHLKINKKDHSSRLGLRKIV SHRKRLLSYLKNKDFKRYAALIEKLGLKDRG >gi|197283027|gb|ABQU01000023.1| GENE 12 8819 - 10600 1463 593 aa, chain - ## HITS:1 COG:HP1523 KEGG:ns NR:ns ## COG: HP1523 COG1200 # Protein_GI_number: 15646131 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Helicobacter pylori 26695 # 1 586 11 607 623 501 48.0 1e-141 MGVKTLFEFFLKFIPKDYTNTIFSSELKINTQAVLAVEVLRYSSFKIAKVLCYAPLFDKE IELVIFNAKPYHKSIFKIGENLVVSGKVQIQNSFVSLIQPKVLKQTGDIFPIFKAQGSRI TLLREFVKSLKLPEIIQAYPYVPKEILKHLLLIYQPDTSFFENFKKNHGFFGASLEALKF IEIYEYMRKLKAKKVEFLSICPLNGDFKKWQRNLPFALTKGQQMAILEIQKDLDSNKAAR RVIVGDVGCGKTMVIFASVLMAYPKKSILMVPTSILAKQIYQESQKFLPKHISVALWTQS SKIGDLESSDFVIGTHALLYRELKGFALVMIDEQHRFGTAQRNTLERMMELEQRRPHILQ FSATPIPRTLAMIESNFLDFSFIRDLPFPKDITSWVISKQDFRELLAHIQREIAKKHQVL IVYPLVEERKSADYTPLKKGEEFWRKHFEGIYVTHGKDKYKEEVLEEFRDKGNILLATTV VEVGISLPNLSTIVIVGAERLGLATLHQLRGRVSRNGLKGYCFLYSKQEKSQRLMRFCQI QNGFEIAQLDLEYRNSGDLLSGEQQSGKQFEWINLALDEKIIANAKEALKNQK >gi|197283027|gb|ABQU01000023.1| GENE 13 10624 - 11865 1306 413 aa, chain - ## HITS:1 COG:HP0657 KEGG:ns NR:ns ## COG: HP0657 COG0612 # Protein_GI_number: 15645281 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Helicobacter pylori 26695 # 2 411 18 426 432 317 41.0 4e-86 MAVELKSLQVKGVEIPILYEKNSQLPLFFVQIVFKGAGGINNQKNYGLSDITSSLLNEGT QKLGAIKFAQKLEEKALNLSVGSGLETMSFTLSGMSKEQKVGFKYLKELIENPNFTDKAL EKVKENSLIGILEKENDFDYQANRALSAMLFQGSPLEYPLSGTKDSIAKMSLGEIQKFYQ SYVNLESAILIVGGDVEYAEITKELAELLEILPVGKAVDIKEIKANEIPQTKRQIKETKQ AYIYFGAPLEVRDLQKESAMIKVASFVLGGSGFGSRMMEEVRVKRGLAYSAVMRLEAGKT LSYAKGYLQTSLKNEKDAQKLVQQVVDEFVKNGITEQELQEAKQYLLGSEPLRNETLSQR LGNAFSNYYKGLPLDFNAQILKDIQNLTLEQVNHYIQSHKEITKLTFSVVSAD >gi|197283027|gb|ABQU01000023.1| GENE 14 11920 - 12993 1079 357 aa, chain - ## HITS:1 COG:HP0656 KEGG:ns NR:ns ## COG: HP0656 COG1060 # Protein_GI_number: 15645280 # Func_class: H Coenzyme transport and metabolism; R General function prediction only # Function: Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes # Organism: Helicobacter pylori 26695 # 12 357 32 377 383 542 72.0 1e-154 MDRAIVNVKIPRVSKDEILDLMQNASLKELGEMAFNIKKQLHPDNITTFVVDRNINYTNI CWVDCKFCAFKRKINENETYILSFDEIDQKIEELLSIGGTQILFQGGVHPSLKIEWYEDL VSHISQKYPQITVHGFSAIEINYIAKISKISISEVLKRLQKCGLASIPGAGAEILSDKVR DIIAPKKLDSDEWIEVHRQAHKIGMRSTATMMFGSVESDLDIIEHWERIRNLQDETNGFR AFILWSFQPAFTPLQKEFPEIHKASSNRYLRLLACSRIFLDNFQNIQSSWVTQGSYIGQL ALLFGANDLGSTMMEENVVAAAGARNSMNQAEMISLIKDVNEIPAKRNTAYDILETF >gi|197283027|gb|ABQU01000023.1| GENE 15 13013 - 13330 296 105 aa, chain - ## HITS:1 COG:Cj0129c KEGG:ns NR:ns ## COG: Cj0129c COG4775 # Protein_GI_number: 15791517 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein/protective antigen OMA87 # Organism: Campylobacter jejuni # 1 105 635 739 739 113 45.0 7e-26 LRGFQSNSVTPRDRYGVRIGGNQTLYGSVELSYGLFETVQMRVSAFYDYGMLGEDKITQI QRSSVGVALEWISPIGAITFIIPKALDAKRGDDTSSFEFTMGQRF Prediction of potential genes in microbial genomes Time: Tue May 24 02:12:01 2011 Seq name: gi|197283026|gb|ABQU01000024.1| Helicobacter pullorum MIT 98-5489 cont2.24, whole genome shotgun sequence Length of sequence - 2350 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1922 2072 ## COG4775 Outer membrane protein/protective antigen OMA87 - Prom 1953 - 2012 7.9 + Prom 1961 - 2020 8.4 2 2 Tu 1 . + CDS 2041 - 2350 236 ## COG0287 Prephenate dehydrogenase Predicted protein(s) >gi|197283026|gb|ABQU01000024.1| GENE 1 2 - 1922 2072 640 aa, chain - ## HITS:1 COG:jhp0600 KEGG:ns NR:ns ## COG: jhp0600 COG4775 # Protein_GI_number: 15611667 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein/protective antigen OMA87 # Organism: Helicobacter pylori J99 # 19 639 53 755 906 481 39.0 1e-135 MRFFSKTLSFVVAAFALSSNLNAAELPTIKEIRYEGLNYISPLIANEIAGIKINEVMDID NIDKSILRFYEQGYFKDIWITEENGILTYHFVEKPVIASLVVSGYGAGKEQAVLDQEIGL KKGDVYDEIKIANTRKRIISLLESQGFYNTVVEVKTEEISQNALKVTLEINKGEEIIIRK ANYYGREELKVSRIESSTANKERDFLGWMWGFNSGKLQVNEIENDALRIRDIYMQKGFLD AEVSSPFLRTDFTTYNAELDFYIKEGQLYKVSGVDIVLEEDVVATEELYDIVRLKEGKEF NISTMRKDVEALKYKIGDLGYAFTRVTPDLDKDQENGEVRVIYYIQPGSKVKVRDVLISG NSKTLDRVIRRNVLLAPGDQYEMSKIQRSKNAIMRTGGFDSVDIEEKRVDEENVDLLVNV KEGKTGEFTFGVGYGSYDGIMGSASIKDRNIFGTGLTAGLYFDKSEVSTSYRLNLYNPAV LDSNYSLSTDIYQTDYVDYDYREITQGFSLVGGRRITDTLEASLGYTYQKSKLSEFDNPY YQRYYMGEYIKSSVIPGLYFDNTDSYFFPKNGWKLSGSLEYAGIGGDADFFKYFGTLYYF KSLEEWTDLDLVFRFRSKLGYIEDNGYVPINERFYLGGVN >gi|197283026|gb|ABQU01000024.1| GENE 2 2041 - 2350 236 103 aa, chain + ## HITS:1 COG:HP1380 KEGG:ns NR:ns ## COG: HP1380 COG0287 # Protein_GI_number: 15645990 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydrogenase # Organism: Helicobacter pylori 26695 # 11 103 1 93 265 95 52.0 2e-20 MQAGIIGLGLIGGSLGLALKEIGMFKRIVGLDSNEIHLQQALSLGLVDEGVDLDEIKLCD VIFLATPVEAILEILPQLVGVAPHTTIIDLGSTKHLISQSIPK Prediction of potential genes in microbial genomes Time: Tue May 24 02:12:04 2011 Seq name: gi|197283025|gb|ABQU01000025.1| Helicobacter pullorum MIT 98-5489 cont2.25, whole genome shotgun sequence Length of sequence - 9142 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 3, operones - 1 average op.length - 8.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 518 440 ## COG0287 Prephenate dehydrogenase + Term 714 - 762 3.4 2 2 Tu 1 . - CDS 535 - 1704 909 ## COG0475 Kef-type K+ transport systems, membrane components - Prom 1729 - 1788 8.8 3 3 Op 1 . - CDS 1848 - 2093 211 ## gi|257461226|ref|ZP_05626324.1| putative CRISPR-associated protein Cas1 4 3 Op 2 . - CDS 2117 - 2809 512 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair 5 3 Op 3 . - CDS 2882 - 4765 1488 ## CFF8240_1679 hypothetical protein 6 3 Op 4 . - CDS 4755 - 5189 443 ## gi|242310027|ref|ZP_04809182.1| predicted protein 7 3 Op 5 . - CDS 5186 - 6484 1168 ## CFF8240_1677 CRISPR-associated RAMP protein 8 3 Op 6 . - CDS 6484 - 7854 1107 ## CFF8240_1676 hypothetical protein 9 3 Op 7 . - CDS 7854 - 8366 441 ## VVA1540 hypothetical protein 10 3 Op 8 . - CDS 8369 - 9142 469 ## CFF8240_1674 hypothetical protein Predicted protein(s) >gi|197283025|gb|ABQU01000025.1| GENE 1 3 - 518 440 171 aa, chain + ## HITS:1 COG:HP1380 KEGG:ns NR:ns ## COG: HP1380 COG0287 # Protein_GI_number: 15645990 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydrogenase # Organism: Helicobacter pylori 26695 # 1 167 95 261 265 189 53.0 2e-48 IRKNFVCAHPMSGTENFGPKAAFKELLPHHIIVLTDLEQSGEFQAAMAKEIFIALKMNII KMDSKSHDNHAAFISHLPHIISYALANTVLSQQNPKDILALAGGGFKSMVRIAKSSPKMW SDVSKQNKQELLKSFEAFQKELDFAINLIQNDKWKELEEWMAKANSLYAIF >gi|197283025|gb|ABQU01000025.1| GENE 2 535 - 1704 909 389 aa, chain - ## HITS:1 COG:HP1183 KEGG:ns NR:ns ## COG: HP1183 COG0475 # Protein_GI_number: 15645797 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Helicobacter pylori 26695 # 7 378 8 379 383 281 47.0 1e-75 METIIAFGVISLLIVIAPFFSTLTRLPLVVVEILLGALAYYFGFFEHSESLKLIAHIGFL FLMFLCGLEVNLKSFTKMGQDFLKKVGLYFLILYSITFVFVLIFELSYIYLAAFPVMSLG MIMTLIRDYGKDKIWLNLALSVGILGELVSIGVLVILNGAYSYGLSFKLYETLLALLLFL GAIVGILKIANIIFWWFPTLKFLAIPKDSTKNQDIRFSAMLLLIMIGIVSLLKLEAVLGA FLAGAILATYFHYQKGLVDKLNDFGFGFFIPLFFVYTGSTLDISLILSDLEILKKVVLIV VCMLFLRILAAFIAYGKYFKSKKNTLLFAFSHSMPLTFLVATAQLGKQFNAISTQEYYAF ILAALLEGIVFMVCIKLIYQLPNKKSPAS >gi|197283025|gb|ABQU01000025.1| GENE 3 1848 - 2093 211 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|257461226|ref|ZP_05626324.1| ## NR: gi|257461226|ref|ZP_05626324.1| putative CRISPR-associated protein Cas1 [Campylobacter gracilis RM3268] # 1 81 652 730 731 78 45.0 2e-13 MDRTIVSMINRNEELNVDINGLLTLESRRLILKNIKERLNACTKYKGKTLTINEIIEGQC WALWRFISAENEKYKGFIGKF >gi|197283025|gb|ABQU01000025.1| GENE 4 2117 - 2809 512 230 aa, chain - ## HITS:1 COG:AF1878 KEGG:ns NR:ns ## COG: AF1878 COG1518 # Protein_GI_number: 11499462 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Archaeoglobus fulgidus # 13 222 12 243 345 76 29.0 4e-14 MQTLHINSPTVSLGISKNIFILKEKGKIIKKIPKYIVKRVVIETLGINLSSNFIKECAIS KIQIDFIENNIQYAQLVAYNPAMTKIITMQAGIMGTPKQIFLAREFIYSKIKNQRNYLKY LSKYHNIINQTILDLDRYIKKLDMAKNIKQLMGIEGKCAVLYWNTFRHMAKFRGFHRIKR NAKDVLNASFNYAYAILHGSIQSSIIKAELNPHISFLHIQNSKSLHLVLI >gi|197283025|gb|ABQU01000025.1| GENE 5 2882 - 4765 1488 627 aa, chain - ## HITS:1 COG:no KEGG:CFF8240_1679 NR:ns ## KEGG: CFF8240_1679 # Name: not_defined # Def: hypothetical protein # Organism: C.fetus # Pathway: not_defined # 28 574 6 478 501 169 30.0 4e-40 MENKGIFGKTYKGPRGEKGVEITAQAPYRFISLPKEIFYPDFGGFKGEDICFDKPISENP KSGVIEIKVKAKSKIFIGDFEGKNEDTNRTRKFFSHNGKFYIPGSSFKGMIKNIVRILSH SRLEIENKTLAYRDLYNLTYQEKAMDSNKIYMGWLYAKGKKWFIRDVGKAKDGSNRIRYF SKQGSDKKSLADIFDENLARNIKNRAKAYEKYHILEEANKSLHTSLGVLVFAGNVGKKTP MISHNLDDMVLVFTGNVGKKTAEFLFPAINPAINPAINPAINPAINPETKNKEDSKYQIE LTQEQIKAFKDAYYIGLPNENENWKKRWSKILKQGKEVPVFFQKDEKGGIKHFGLSWLYK LPYENSILDILHRQIPNYQENKLDMIQRIFGFCADSKKSAGDSDSALKGRVSFSHFEITE GATNAVEMPQTIILSEPRATFYPFYLQQNRESSKLLTYDDKEARLSGIKFYPPRKAIMNK PFSNGNSNIETKITPLKENVEFVGKMRYFNLRKEELGLLVLALTFLKEENGEFYKIGGAK PYGYGDCVLEIGGLSNEEQRECIESFVKCFRNSQGIDPRESEGARELKEFSRKLNRENNY MELKDFGDIKGDLSKLNKRRKGKGQKK >gi|197283025|gb|ABQU01000025.1| GENE 6 4755 - 5189 443 144 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310027|ref|ZP_04809182.1| ## NR: gi|242310027|ref|ZP_04809182.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 144 1 144 144 268 100.0 1e-70 MNKWVETKVFDQGELEVFYKGLGKNLEGYVNMSDDGVEIFDELKKWEDLHNGKNFILEAG FSDHQKSIKINFINGKFYVLEVDLSQIPSEYKNENCFLVRGDSRIAKITQVWEDVKNQEC LGFESLELKYLFFSGFGVRGNNGK >gi|197283025|gb|ABQU01000025.1| GENE 7 5186 - 6484 1168 432 aa, chain - ## HITS:1 COG:no KEGG:CFF8240_1677 NR:ns ## KEGG: CFF8240_1677 # Name: not_defined # Def: CRISPR-associated RAMP protein # Organism: C.fetus # Pathway: not_defined # 5 432 1 446 450 317 44.0 4e-85 MGEVMSNKHLIAHIVFEAKTALKVGSSNYDFLQDSPIMRDWNGLPMILGTSLAGVLRKSM VEFLKNCGKDDLWEVNEVFGDSCQKGSKVIFTNALLLDNQNKVYENLLLEKTDFLKLFNI LPKRQNTAITEKGVAKDKSKRDNEVVFAGTRFKFGIEMLCETSEDEKRFFLLLDLLNLLT FRIGSGSSKGFGAIKILKISYDEFEVNSKRYVEFANSLNGTQELKREYCPQECKFEKYDM YELHLKAENFFIFGSGGCDDEVDCVGSYEMVLCYQEENLSEKSKRILIPASSIKGAISHR TTYYYNMANNEDAKEVREIFGSEGELEGAKGKILMSDLYLTNNENQKIFAHNKIDSFRGG VINGALFQEKVESVNEEFKIEIWVERNIKQEAINAFENALRDVANGMLALGGLGNKGHGF FSGKVLKNGVEI >gi|197283025|gb|ABQU01000025.1| GENE 8 6484 - 7854 1107 456 aa, chain - ## HITS:1 COG:no KEGG:CFF8240_1676 NR:ns ## KEGG: CFF8240_1676 # Name: not_defined # Def: hypothetical protein # Organism: C.fetus # Pathway: not_defined # 1 451 1 444 451 245 35.0 2e-63 MERVYFEVEFLENVVLNKSNNTEGFSNTLDFVSGSVFLGIVAREYERFSETFEIFHTPKV RFSQAVPYVEGKRAFRVPFSFYHSKGDASKVFNAHLNPEKMQYGQVKQKREGYFVLQDEL LCFFELGNEYHQKSAYDSQKRKSEDSKMFGYYSLERDSQWVFYVEIDGSIREKDKIIEAL EGIKYLGRSKNAQYGKVKIKRMESAKGENVFRISQEDSKNGVVYLYADSEIALFENGEST LIPSIENLGLSSGKIKWEECQIRTRSFKPFNSKRRRWDHSRNVITQGSVIALENVSKSDL ESLKNGIGGYLNEGYGKVLVNPIFLLRDIKSKTFEVKREQAAREVKTELIEFLLKARKQK EQEDEIGNQVSDFIESHKEKLKSISNSQWGNIRMILEFSKEEWQEKIKEYIYRDYKSKDK RIKKQYEDCERELIGKLEKENLEFWKLLAIQAPKAF >gi|197283025|gb|ABQU01000025.1| GENE 9 7854 - 8366 441 170 aa, chain - ## HITS:1 COG:no KEGG:VVA1540 NR:ns ## KEGG: VVA1540 # Name: not_defined # Def: hypothetical protein # Organism: V.vulnificus_YJ016 # Pathway: not_defined # 13 166 14 193 200 72 31.0 7e-12 MNLKYKIRFLDFWHCSNGMSGGSKYDAGVLLDRVGIPFVPGKTIKGLAREFVFDKEFEEV CFGKEECEGVCHFCDAVLGKDEAYTIQKENLQEFLKTFVSYTAIEENGRAKEGSLREIEV VIPLVLYGEINNVPQDFVLLMQNALKSIKRIGLNRTRGLGRCEIIINEGI >gi|197283025|gb|ABQU01000025.1| GENE 10 8369 - 9142 469 257 aa, chain - ## HITS:1 COG:no KEGG:CFF8240_1674 NR:ns ## KEGG: CFF8240_1674 # Name: not_defined # Def: hypothetical protein # Organism: C.fetus # Pathway: not_defined # 8 256 222 449 454 169 43.0 9e-41 ATTKNNQIENKKIREIILGGDDVTLMCDADLAIDFVCKFLSEFENNTSFVKGFDKSKERL NACAGIAFCNEKFPFFMAVKLANELCQRAKSDSRGRDSANPPSSLMFHNIQDAFVGSFDE IRKRELIIKNDSQEIACDFGAYYLNFKFKPNIQTLQEVILSFRDKQSPKSRLREWLNVLK EGQTKADNELKRIVTIFKDKWIDKHAKKLENPLQEDRETNGERISKLKEGLSVEKLIVEG KTPIFDILQILAVESKE Prediction of potential genes in microbial genomes Time: Tue May 24 02:12:41 2011 Seq name: gi|197283024|gb|ABQU01000026.1| Helicobacter pullorum MIT 98-5489 cont2.26, whole genome shotgun sequence Length of sequence - 1720 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 682 525 ## CFF8240_1674 hypothetical protein 2 1 Op 2 . - CDS 679 - 1509 585 ## COG5551 Uncharacterized conserved protein 3 1 Op 3 . - CDS 1506 - 1718 241 ## gi|242310033|ref|ZP_04809188.1| predicted protein Predicted protein(s) >gi|197283024|gb|ABQU01000026.1| GENE 1 1 - 682 525 227 aa, chain - ## HITS:1 COG:no KEGG:CFF8240_1674 NR:ns ## KEGG: CFF8240_1674 # Name: not_defined # Def: hypothetical protein # Organism: C.fetus # Pathway: not_defined # 2 226 3 218 454 158 41.0 1e-37 MKYIYGASLVGLQEFIFKTNKLREIIGGSELIKQFDMLDLKEEFGISDYIVIVQAAGNLR VILKDEVDARKIVRELPKKIMERICGISISQALVEYDDNNYDSAIKELERKLKVARNQNS IPLDGHFALLDINPRTGFSALDERCQEGRVDIGSLQKLQAFDRAAKENKYLKGVNEKIGN SKNKIAIIHIDGNSLGEIVRGIRKVEEMQEFSKQIKQSTKEAFESAK >gi|197283024|gb|ABQU01000026.1| GENE 2 679 - 1509 585 276 aa, chain - ## HITS:1 COG:AF1859 KEGG:ns NR:ns ## COG: AF1859 COG5551 # Protein_GI_number: 11499443 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Archaeoglobus fulgidus # 16 271 22 287 289 65 25.0 1e-10 MKYAKLNIKVADSKAPYFIGSQVRGAFGYALKSVVCINPTKECNGCESCQKCLYYEFYEN KNVYHKYRFDFLLGNSNYDFDFYLFGDVIGYLPYCVTAFYRLFTQIGLGKERRKFVDFEM QVNGRSCYKNGSLRVLENFSLDIKIPPFEREIVLEFLTPLRIKKYNSFLRYGEGLELKDL INSIYQRQMKILGRDFKKFPYEIKGEIYGRDLRFLELSRHSNRQKVMMNLGGLVGRVCIK NLNKESYEVLRLGEYLGVGKQCVFGLGKIRVEEIEK >gi|197283024|gb|ABQU01000026.1| GENE 3 1506 - 1718 241 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310033|ref|ZP_04809188.1| ## NR: gi|242310033|ref|ZP_04809188.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 70 1 70 70 135 100.0 8e-31 MPIRILRKQISRAEVCGILGSLHSGDKYNIAYLKNPEFFKKINKIGRGKLDCLEIPLIKG DVFEYKEALR Prediction of potential genes in microbial genomes Time: Tue May 24 02:12:56 2011 Seq name: gi|197283023|gb|ABQU01000027.1| Helicobacter pullorum MIT 98-5489 cont2.27, whole genome shotgun sequence Length of sequence - 26584 bp Number of predicted genes - 29, with homology - 26 Number of transcription units - 10, operones - 5 average op.length - 4.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 151 163 ## - Prom 178 - 237 8.0 + Prom 134 - 193 5.7 2 2 Op 1 . + CDS 228 - 1664 1231 ## gi|242310034|ref|ZP_04809189.1| predicted protein 3 2 Op 2 . + CDS 1675 - 2043 273 ## MJ1673 hypothetical protein 4 2 Op 3 . + CDS 2043 - 2318 265 ## Haur_2235 CRISPR-associated Cas2 family protein 5 3 Tu 1 . - CDS 3390 - 3491 84 ## - Prom 3591 - 3650 5.0 + Prom 3449 - 3508 7.2 6 4 Op 1 . + CDS 3550 - 4878 980 ## COG0520 Selenocysteine lyase + Term 4886 - 4918 -0.6 7 4 Op 2 32/0.000 + CDS 4946 - 6637 1959 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 8 4 Op 3 1/0.000 + CDS 6641 - 7111 541 ## COG0440 Acetolactate synthase, small (regulatory) subunit 9 4 Op 4 . + CDS 7121 - 8122 992 ## COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 10 4 Op 5 . + CDS 8201 - 8446 379 ## gi|242310041|ref|ZP_04809196.1| predicted protein 11 4 Op 6 . + CDS 8443 - 8691 394 ## gi|242310042|ref|ZP_04809197.1| predicted protein 12 5 Tu 1 . - CDS 8703 - 10103 1506 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases - Prom 10131 - 10190 6.7 - Term 10130 - 10171 -0.1 13 6 Op 1 . - CDS 10328 - 10915 683 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 14 6 Op 2 . - CDS 10967 - 11452 402 ## COG0789 Predicted transcriptional regulators - Prom 11491 - 11550 10.7 + Prom 11504 - 11563 7.0 15 7 Tu 1 . + CDS 11590 - 11730 140 ## + Prom 11784 - 11843 2.2 16 8 Tu 1 . + CDS 11864 - 12820 799 ## COG0500 SAM-dependent methyltransferases + Term 12824 - 12859 -0.6 17 9 Op 1 . - CDS 12861 - 13418 371 ## JJD26997_1799 methyltransferase domain-containing protein 18 9 Op 2 . - CDS 13402 - 13995 470 ## JJD26997_1799 methyltransferase domain-containing protein - Prom 14203 - 14262 9.1 19 10 Op 1 1/0.000 - CDS 14535 - 15203 562 ## COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) 20 10 Op 2 3/0.000 - CDS 15191 - 15796 776 ## COG0279 Phosphoheptose isomerase 21 10 Op 3 1/0.000 - CDS 15784 - 16800 1004 ## COG2605 Predicted kinase related to galactokinase and mevalonate kinase 22 10 Op 4 5/0.000 - CDS 16807 - 17835 1092 ## COG0451 Nucleoside-diphosphate-sugar epimerases 23 10 Op 5 1/0.000 - CDS 17914 - 18939 970 ## COG0451 Nucleoside-diphosphate-sugar epimerases 24 10 Op 6 . - CDS 18939 - 19496 648 ## COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 25 10 Op 7 . - CDS 19499 - 20746 1072 ## COG1232 Protoporphyrinogen oxidase 26 10 Op 8 . - CDS 20747 - 22714 896 ## CJE1602 capsular polysaccharide biosynthesis protein, putative 27 10 Op 9 . - CDS 22704 - 24470 997 ## Cj1431c capsular polysaccharide heptosyltransferase 28 10 Op 10 . - CDS 24475 - 25341 934 ## gi|242310057|ref|ZP_04809212.1| predicted protein 29 10 Op 11 . - CDS 25317 - 26558 387 ## COG0463 Glycosyltransferases involved in cell wall biogenesis Predicted protein(s) >gi|197283023|gb|ABQU01000027.1| GENE 1 1 - 151 163 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVDVEMILVILDYLDKFTIIAATFAAVFSIIGFYKRRKDNDLIRIIIEDK >gi|197283023|gb|ABQU01000027.1| GENE 2 228 - 1664 1231 478 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310034|ref|ZP_04809189.1| ## NR: gi|242310034|ref|ZP_04809189.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 478 1 478 478 779 100.0 0 MHIILILGTSGDKSIKHTYIFQDKQQEYRNKRHNSTDFFLSLEQQYTILGTKESFEHQLK IFADHPKYSAILEHFNNQAHYIDPNDPETLFDKILETLKSLTDKTILIDITHGFRDQPLL ATLAALIAKVNFQNKIQLIYARDISPTNQPPQTPKQYRYEMLDEYINIGLKSFLLTSFIQ TLTIPKISIQDKLIEVLQNFSQDLHKNNFKDLFSTSLESLKTELQKDKTKALEELILQIK DITNDFETIKSKKYEYEKFYEMATLMLAKNYYLIAATYATETLPQYIKHYFSKHNILTQI DQIDEYTIHNALNQFITSDIPNNEIFNYEKASFFKDNHKDSFEKFAKILKDIRDERNNLA HIGNSNIQNNLSQHLKNFKESFLDQTPFQSCDFTDLGDTEEITQKINSYFNDKFQYTFSH TFYKMRKQASQEPLNIKKYFQHRFKKDPKAQSIIQLLKKYKTNKYLTKQQAQDFINIL >gi|197283023|gb|ABQU01000027.1| GENE 3 1675 - 2043 273 122 aa, chain + ## HITS:1 COG:no KEGG:MJ1673 NR:ns ## KEGG: MJ1673 # Name: not_defined # Def: hypothetical protein # Organism: M.jannaschii # Pathway: not_defined # 2 122 3 126 129 99 44.0 5e-20 MKLFTLLNHALTPTQKDQLQTMGITKIISISDKKWSAIPPYLETLDEFLKPYQQTLKAQA QKGDYLLVQGDFGATYQMVNYSKSLELIPIYATTKRISKETTLKNGIIQKQTLFTHCIFR KY >gi|197283023|gb|ABQU01000027.1| GENE 4 2043 - 2318 265 91 aa, chain + ## HITS:1 COG:no KEGG:Haur_2235 NR:ns ## KEGG: Haur_2235 # Name: not_defined # Def: CRISPR-associated Cas2 family protein # Organism: H.aurantiacus # Pathway: not_defined # 3 78 7 82 94 72 40.0 7e-12 MNYLITYDIKSNKKRKKVSDFLDGYGLRVNLSVYECQLTKKALKEIKTNLKKILNRKTDS IRLYRICKNCNNKSKSIGKGKEPFAPIDLNF >gi|197283023|gb|ABQU01000027.1| GENE 5 3390 - 3491 84 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDTNIFGKLEPFEIGCVVKYSRFKEPIFTVQMS >gi|197283023|gb|ABQU01000027.1| GENE 6 3550 - 4878 980 442 aa, chain + ## HITS:1 COG:Cj0791c KEGG:ns NR:ns ## COG: Cj0791c COG0520 # Protein_GI_number: 15792129 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Campylobacter jejuni # 27 437 8 415 424 423 55.0 1e-118 MIKERTFAPLLPDSFQILSHKEKKAFLKKETILKKKIHYFDWTASGLATKCIEKRIRKIL PFYANPHSESSSHSKIIGEIYENARKNLKTFFGLDSSFALISCGFGSSAAIKKFQEIMGI YLPPQTKSNLKLENLDKSLLPLVIIGPYEHHSNELSFREGLCEVVRIPLDTQGLIDLEML QHILSNNTHRKIIASFSLASNVSGIIAPFAEISHLVRKYGGIVCFDMASSSAYFDIPSHF YDVAFLSPHKLLGGIASSGILIIKRALINKTLPPTFCGGGVVGYVSRTSQLYFANEEIRE EAGTPGILEFIRASLAYQLREEIGQEWIANSKKELIKILKEFLENESKITIYGNPNYNSN GTFSFNIQNKSPYEIANKLSKDFGILVRAGCSCAGPYGHDLLGLKDNTIFEQKPGWIRVS LHYTHQKKEIHYLCNSLKILCK >gi|197283023|gb|ABQU01000027.1| GENE 7 4946 - 6637 1959 563 aa, chain + ## HITS:1 COG:Cj0574 KEGG:ns NR:ns ## COG: Cj0574 COG0028 # Protein_GI_number: 15791934 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Campylobacter jejuni # 2 559 3 559 566 743 65.0 0 MQLNGSEMIIHALKNEGVKVVFGYPGGAALNIYDEIYKQNFFEHILTRHEQAAIHAADGY ARASGEVGVAIVTSGPGFTNAVTGIATAYMDSIPLVIISGQVPTTLIGTDAFQEIDAVGI SRPCTKHNFLVKSIEELPRILKEAFYIARSGRPGPVHIDLPKDISATIGEFNYPNEIKLQ TYKPTYKGNPRQIKKVAQAILESKKPLLYIGGGCVASKSSNLIREFCEITHIPVVETLMA RGIMPYNHPDLLGMVGMHGSYVANMAMSETDLIIALGARFDDRVTGKLSEFAKYAQIVHI DIDPSSISKIVDVTYPIVGDVSSVLEELLGLIKNDFEVKNILPWKETLERYNKLHPLSYE DSQEVLKPQWIIKKVGEILGNEALISTDVGQHQMWAAQFYPFNFPRQFITSGGLGTMGFG LPAAMGAKKAFPKKVSINITGDGSILMNIQELMTCSVYNIPVINIILNNNYLGMVRQWQT FFYENRYSNTNLEIQPDFIKLAESFGGIGFVVNTKDEFVESLNKAINSNKSALLDVRIDR YENVLPMVPTGGALFNMMLEYKE >gi|197283023|gb|ABQU01000027.1| GENE 8 6641 - 7111 541 156 aa, chain + ## HITS:1 COG:Cj0575 KEGG:ns NR:ns ## COG: Cj0575 COG0440 # Protein_GI_number: 15791935 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase, small (regulatory) subunit # Organism: Campylobacter jejuni # 3 154 1 152 154 152 51.0 3e-37 MEIKRIITVTVLNEHGVLSRISGLFAGRGYNIESLTVAPIFDTNLSRITITTQGDKKVLE QILKQLHKLIPVLKVLEDERIIEQESVLVKFSNKESLSELTAIFASYNGKMLEVNEKFAI FMACDCHTRINGLLQAIQTYKPKDITRSGIAAIEAN >gi|197283023|gb|ABQU01000027.1| GENE 9 7121 - 8122 992 333 aa, chain + ## HITS:1 COG:Cj0576 KEGG:ns NR:ns ## COG: Cj0576 COG1044 # Protein_GI_number: 15791936 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase # Organism: Campylobacter jejuni # 1 333 1 318 321 291 48.0 2e-78 MLLGEIVAFLKEKEVLEQVLEWRGSWEKHSNLFDTQEILHIKPPLEADDSCITFLEKDKY LSEITQSKAKIILTRSVYLQHIPKTALAFICENPYLAMAYLTKFFAKPLFSSKTPPKIAT NATIATNATIGNGSEIGENAIIMAGVVIGENVKIGKNCILYPNVCIYNDCEIGENVIIHA NSVIGSDGFGYAHTKNGEHIKIHHNGKVVLEDEVEIGSNTSIDRAVFGETRIKKGTKIDN LVQIGHNCNIGEYSIIVSQAGISGSTTTGRNVVLGGQSGSAGHLHIGEFTQIGARGAIAK SVPAYGKFSGHPLLPIQDWLRLQAIFKKMLKNK >gi|197283023|gb|ABQU01000027.1| GENE 10 8201 - 8446 379 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310041|ref|ZP_04809196.1| ## NR: gi|242310041|ref|ZP_04809196.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 70 1 70 81 122 100.0 6e-27 MKEERIFKTIPLNDTKNGTISFAIIKNPYEEDGNAVVSIGIMIDDTKPEWKVHIPFSQIK EVRKILKKAHKKYKPSKKGKQ >gi|197283023|gb|ABQU01000027.1| GENE 11 8443 - 8691 394 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310042|ref|ZP_04809197.1| ## NR: gi|242310042|ref|ZP_04809197.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 82 1 82 82 117 100.0 2e-25 MKQKIKKLAYTIPLDSDYIHDANIVVAKINVPSKKDKKQTAISISLNLNDDTKDITHPEW KVIIPKRKVKELRKALKRICKD >gi|197283023|gb|ABQU01000027.1| GENE 12 8703 - 10103 1506 466 aa, chain - ## HITS:1 COG:Cj1288c KEGG:ns NR:ns ## COG: Cj1288c COG0008 # Protein_GI_number: 15792611 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Campylobacter jejuni # 2 462 3 459 463 528 58.0 1e-150 MEEIITRFAPSPTGYLHIGGLRTALFNYLYARANGGKFLLRIEDTDLARNSTDAKEAIIQ AFDWVGLDYDGEVVYQSQRFPLYTQYIQQLLDEGKAYYCYMSKEELDSLREEQRKRGETP RYDNRYRDFKGTPPDGVKPVVRIKAPLSGEICFSDGVKGEMRIAAKEIDDFIIARSDGTP TYNFCVAVDDALMGVTNVIRGDDHLSNTPKQIIIYEALGFKVPKFFHVPMILNPQGHKLS KRDGAMSVMEYKDMGYLPEALLNFLVRLGWSHGDQEIFSKQEMLEYFNPNDLNSSPSAYN QEKLLWLNSHYLKELNNESLNALLQKNFGLNIPQERVQGILYPEIKERSKTLVDFVMITK ECLEAPQNFDEKMKQKVASEENIKLLKDFSIYIQSLKKPIDNPQEAESEIETFADFHGVK PKVLFMPLRYVLLGKSGGVGIAPLLASLEKEEIIKRIQNALESFKG >gi|197283023|gb|ABQU01000027.1| GENE 13 10328 - 10915 683 195 aa, chain - ## HITS:1 COG:MA0410 KEGG:ns NR:ns ## COG: MA0410 COG0110 # Protein_GI_number: 20089303 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Methanosarcina acetivorans str.C2A # 2 184 9 191 191 204 55.0 6e-53 MNVFEKDLAGMPLDGRDPEVAPIIEVIKATQRLVAQLNSGEKSEEEVRELLSQITGREVD STLWLIPPFYTDFGRNIHFGKNVFVNSACTFMDRGGIYIDDEVFIGPKVNLITINHDINP YNRNTTICKPIHIEKRVWIGVAATILPGVRIGENSIIGANAVVTKDVPSNTIVGGNPAKV IKIIDVEQYRQELQN >gi|197283023|gb|ABQU01000027.1| GENE 14 10967 - 11452 402 161 aa, chain - ## HITS:1 COG:Cj1563c KEGG:ns NR:ns ## COG: Cj1563c COG0789 # Protein_GI_number: 15792868 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Campylobacter jejuni # 1 136 1 136 143 147 52.0 7e-36 MAYTIIEVEKKTGVSSHTLRFWAKKGLFPFVEKDDNQVKYFSERDVEWVRWINWFRKSQM DIPTIRHYINLANKGDETAQERRDIIARQREIVADSIDELKMILDTLDYKLGVYDKMLAK NLDGFNPQSKQYKKCNPTTHCYEDSQESHNEGGGGDKAPKD >gi|197283023|gb|ABQU01000027.1| GENE 15 11590 - 11730 140 46 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTTCPLCESKAQKNEIFVTKYAFTSSGKLNKEPFNNTMGGGAETIL >gi|197283023|gb|ABQU01000027.1| GENE 16 11864 - 12820 799 318 aa, chain + ## HITS:1 COG:SMb21067 KEGG:ns NR:ns ## COG: SMb21067 COG0500 # Protein_GI_number: 16264394 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Sinorhizobium meliloti # 82 302 170 401 401 64 22.0 2e-10 MNENIQSIKNTILRYINQDSVCLEIAPGSGDMVLALIDFVKYFYTVDPSLVSLEFEKANN LQHIQAFFNYKTIKETLQHKVNFILFRHLLEHINTPLNFLKDVVDLIENNGIIYIEVPNI EEFIKHKRFYEIFNDHCGYYQKNTLINTLENLGCTFLDEIFLYRGQHMGLFFQKKENPII KKQCDFIIYPNLNNLFNENIILLNQLIQPYKDIAIYGAGAHGNTIATFLNQENLQNIKKC FDLDKRKQGQYLQNSAIQIVEPNKQNFTDIDCIIIAAPLYEEEVQHSLRERGFKGNIILT EKEIKSQKNNQYKVSTNS >gi|197283023|gb|ABQU01000027.1| GENE 17 12861 - 13418 371 185 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_1799 NR:ns ## KEGG: JJD26997_1799 # Name: not_defined # Def: methyltransferase domain-containing protein # Organism: C.jejuni_doylei # Pathway: not_defined # 1 183 192 376 378 236 64.0 4e-61 MQKWLESKFTNCLNFEHTILLSEAVLEFLFAKHQFRLIDKHYFKDHSIFYYLQKDSTIQE ITLKNEYHKNKKMFSDLYEYYEKQIAYLNNILRKSTKEIYLFGAHLFGQFLIFNGLDISR ISCILDNNPAKQGRRLYGTSLFVKSPKILKDKKDALVILNAGIYNDEIKKDIIENINDKI EIINF >gi|197283023|gb|ABQU01000027.1| GENE 18 13402 - 13995 470 197 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_1799 NR:ns ## KEGG: JJD26997_1799 # Name: not_defined # Def: methyltransferase domain-containing protein # Organism: C.jejuni_doylei # Pathway: not_defined # 2 182 3 183 378 257 66.0 2e-67 MKIDYTIREKCVINGSELEILSSKLFPLFCGCVDTPQEEDLICEQEFAISKEGVIQLTKL IPLDLLYANGHDAGSVGALWEEHHTEFAKFILSKEVKNVLEIGGGHGKLSQNCLATKKIR WTIVEPNPTHRYDNVVYVDNFFSKELFQNEKFDTVVHSHTFEHIYNPHHFLQEVSSVLVE GGGGQNVVLFTQYAKVA >gi|197283023|gb|ABQU01000027.1| GENE 19 14535 - 15203 562 222 aa, chain - ## HITS:1 COG:Cj1423c KEGG:ns NR:ns ## COG: Cj1423c COG1208 # Protein_GI_number: 15792741 # Func_class: M Cell wall/membrane/envelope biogenesis; J Translation, ribosomal structure and biogenesis # Function: Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) # Organism: Campylobacter jejuni # 1 221 1 221 221 293 69.0 2e-79 MQAIVLAGGLGTRLRSVIQDIPKPMAPINGKPFLAFVLEYLKEQGITEVILSVSYKYELI QEYFRDEFQGLKIIYNVEKELLGTGGAIKDSLKFIKDEVYVLNGDTFFDIPLKEMKLGES KICIALKQMQNFDRYGNVKIDKQGFVVSFEEKVFKEQGLINGGIYLIKKDIFDGFELGKK FSFEEFLCKYYRELQIQTKIFESYFIDIGIPEDYEKFVKSNL >gi|197283023|gb|ABQU01000027.1| GENE 20 15191 - 15796 776 201 aa, chain - ## HITS:1 COG:Cj1424c KEGG:ns NR:ns ## COG: Cj1424c COG0279 # Protein_GI_number: 15792742 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoheptose isomerase # Organism: Campylobacter jejuni # 1 200 1 200 201 314 79.0 6e-86 MEVVNSYIKERFEDSIAVKTKILNDEKLLELIKKVALETAKAYKEGKKTLLAGNGGSAAD AQHIAGEFVSRFYFDRPGIPSIALTTDTSILTAIGNDYGYEKLFSRQVQAQGVEGDIFIG ISTSGNSANIIETLKVCKEKGILSVGLTGESGGKMNELCDYCIKVPSNKTPRIQESHILI GHIICAIVEEELFGKGFGCKL >gi|197283023|gb|ABQU01000027.1| GENE 21 15784 - 16800 1004 338 aa, chain - ## HITS:1 COG:Cj1425c KEGG:ns NR:ns ## COG: Cj1425c COG2605 # Protein_GI_number: 15792743 # Func_class: R General function prediction only # Function: Predicted kinase related to galactokinase and mevalonate kinase # Organism: Campylobacter jejuni # 3 338 4 339 339 581 86.0 1e-166 MVIRSQTPLRLGLAGGGTDINLYCDKYTGYVLNTTISLYIHCTLIERDDETIIFDSPDTN SYAKYQSSSHLQNDGNLDIFKAIYNRIVRDFAHKPLSFSLHTYSDVPSGSGLGGSSTLVV GIIKAFAEWLNLPLGEYEIAKLAFEIEREDMGIVGGAQDQYAATFGGFNFMEFYDQKRVI VNPLRIKNWIASELEARVVLYFTNITREAKDVEEHKKGKLGDQKSLEAMHAIKQDAVAMK EALFKADFDTMARILGKSWQSKKIISEIVSNDELERIYNLAMANGAYSGKTSGAGAGGFM FFLVDPIKKYQLIKLLNQEQGYVQDFSFTKEGAKSWKL >gi|197283023|gb|ABQU01000027.1| GENE 22 16807 - 17835 1092 342 aa, chain - ## HITS:1 COG:MT0121 KEGG:ns NR:ns ## COG: MT0121 COG0451 # Protein_GI_number: 15839493 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Mycobacterium tuberculosis CDC1551 # 6 332 5 311 318 150 31.0 5e-36 MKTALITGFTGQVGSQMADFLLENTDYEVIGMMRWQEPMDNIYHLSDRINKKDRISVFYA DLNDYSSIQKLFETKRPDVIFHLAAQSFPKTSFEIPIETLQTNIIGTANILENIRILKQK DGYDPVVHVCSSSEVYGRAKVGVKLNEETPFHGASPYSISKIGTDYLGRFYGEAYGIKTY VTRMGTHSGPRRSDVFFESTVAKQIALIEAGLQEPVIKVGNLSSVRTFQDCRDAIRAYYL LSLESEKGNVPCGEAFNIAGEEAFKLPEVIEILLGFSTRKDIKVQEDAERLRPIDADYQM FDNTKIKSFIDWKPEIPARKMFEDLLNHWRKEISMGRIPLNR >gi|197283023|gb|ABQU01000027.1| GENE 23 17914 - 18939 970 341 aa, chain - ## HITS:1 COG:Cj1428c KEGG:ns NR:ns ## COG: Cj1428c COG0451 # Protein_GI_number: 15792746 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Campylobacter jejuni # 1 338 1 342 346 388 56.0 1e-108 MHKDSKIYIAGHNGTLGRALLVALKESGFRNIILKDRKELDLVNQDMVQDFFAREKPEYV FLCAAKLDTLGLFTPADVIYQNSMLQANIIQSSYQNRVKKLIFYGSAWAYPQKAMNPIGE ESLLSGKLDLKAVAYGLPKIIGTKMCEFYNRQYETNFITLYLANLYGETTEFDLQKAKVL PALLRKFHLAKLLRENKTNEILRDLKMNSLDQAQEYLQNFGVNENSVEIWGSGNTIREFI HAKDLADASIYVMQNIDFKDIASHNEPHLNVGSGEFLSIKELAFLIKDIVGFNGKVVFND EKPDSTMDRMLDSSRLQNLGWKHKINLEQGIRIMYEWYLKA >gi|197283023|gb|ABQU01000027.1| GENE 24 18939 - 19496 648 185 aa, chain - ## HITS:1 COG:Cj1430c KEGG:ns NR:ns ## COG: Cj1430c COG1898 # Protein_GI_number: 15792748 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes # Organism: Campylobacter jejuni # 1 179 1 179 181 287 75.0 7e-78 MAIEFNIQESKILEGVYIITPNKFQDLRGEIWTAFTSEAIDKLLPNNLQFIHDKFIHSKH NVIRGIHGDHKTYKLATCVYGEIHQVVVDCRKDSPTYLKYEKFIINQENQQIILVPSGFG NAHYVSSDSAVYYYKCAYKGSYVDANEQFTFAWNDPRIGIDWPTNNPILSDRDMEATTND CIKGF >gi|197283023|gb|ABQU01000027.1| GENE 25 19499 - 20746 1072 415 aa, chain - ## HITS:1 COG:PH0425 KEGG:ns NR:ns ## COG: PH0425 COG1232 # Protein_GI_number: 14590342 # Func_class: H Coenzyme transport and metabolism # Function: Protoporphyrinogen oxidase # Organism: Pyrococcus horikoshii # 23 408 24 433 440 168 30.0 2e-41 MKIGIIGAGISGMSVARLLKDDFEVEVLEKLPVVGGIARTKDVNGMPYHVNGGHCFNSKF DDVLEFIFNTVLSKDKWNFMPRKAEVLFKNHWISYPIEFSIKEIDNFDTNLAFQITNEMF NASYEKGNNLEEWFINHFGPTLAKEYFIPYNTKIWGIAPKNMDNVWIEDEKQMKLPVPTK ESFYKSLIDKTSDKMSHASFYYPKTNNQNTFIEAIGDDVKIFTGYEVKDIAKEGNQWIIN GEKKYDILINTSPLDLMPKILKTIPGEALNYFKKLKYNKVTNIFWETDGSLDITWGYIPD PNIGFHRISNTGSIVQPKGNFCTTEAIGQISYDKLVQEGQKIPFLKKPLDYNVTEHAYVF FDLNYTQAKMGAISYLNQLGIFSHGRFGEWEYYNMDVCIKRSIDLAKSIKEKYRR >gi|197283023|gb|ABQU01000027.1| GENE 26 20747 - 22714 896 655 aa, chain - ## HITS:1 COG:no KEGG:CJE1602 NR:ns ## KEGG: CJE1602 # Name: not_defined # Def: capsular polysaccharide biosynthesis protein, putative # Organism: C.jejuni_RM1221 # Pathway: not_defined # 13 655 13 638 639 198 26.0 5e-49 MKNDGLELIKNKITKALNVWDFRSIEILYERNRKYFCIEYILYLYKYGQFDILLHELKNI DSSQWEKQSIIKVDLYSFQTYIDEFLGISNVKDALHIMNESILEKTSVVLFVLKSLIEKD ELEVEFFLELFEKYLYKISDALIIGYCITMVFDYFKTSSLKKREAFFNHRHPFARQYFLL MKLYQMNTLSSKFFLREYMYEWKGLIRKPVNNRVAICINGVFRGDWQATIGKIIEKLAIP LKADCFIYTWDLYQEWTGMSGGDSWIRRNFIEYSEEAPECIFKNTSLKQNFPNVFEQLSF EYLMPLKVSELENMQKIYPNIKRFALADESEFEYAWTYSPNNYKMAFNAYKVFNLLEEYE KENDMRYDFVFMIRPDSEPVFSGQLNLYDELNRLKSDEIVDMITRTGNGLGNIYGTREAI KIYSSIYMNFGTFLTNRSLYGYQGSDLNSNVSKKDMMSLVLSFHDLAFRWLSYNGLMIVT GNIKFDFFNTLCLKGIKLPDFEKYLNDDLQINSNKLSKEHLGAAVFFLQKLQKKFGIVSD DSIKRKIIQNNTNVSIDTQKYLAHKLGNLYLNCNKTLLEKILFPIKFIVIISRHDGSSYQ NININNYILEDDEKIVFEVGSLLLYLYKNWYKNNCVQVFKELFQKTNEYKNYKGV >gi|197283023|gb|ABQU01000027.1| GENE 27 22704 - 24470 997 588 aa, chain - ## HITS:1 COG:no KEGG:Cj1431c NR:ns ## KEGG: Cj1431c # Name: hddC # Def: capsular polysaccharide heptosyltransferase # Organism: C.jejuni # Pathway: not_defined # 3 581 5 571 582 218 30.0 7e-55 MKKDIIVAARSDGFGERMCALLNAMYLSEILNMDFRFKWRENANSVVHDFTQKNTYLVAN ETSDIKDFFNNDFIKCYHIDSVDMSELCSIWELKNKSIFDFIFTSKEEWGWYAPPHNLTK IVRNLNENEYREKLKGCWQKIQFNPVINAIIHEANLKSKNEEFVAIHVRSGDNVYERSMH TRWLWYALDKSVSFYLVYEIIIREIRKGNKVVLFGDDPTTNAILKDYINSSNVCTIEDFI DLPNINSDQRVIFEIVFMSNAKTIYAGNSGFSRVAYFIGNANFYLINLYFTHQEKKEIIY KNLDKLPINKKHAAFSLFYIYSLFESKQTISENIQLLEHGLSYDYENDVFRLCLIDVYLK RKCYAEANQLLQDFFAHRKEQFFELLLQKTFMVKKFNCDKIFKSYCIKQELFEYKYIFYV FCRLALDISEHIEDFKEQYGLVHIEILEHFYNISKQKQFYQAYEVELFNDIKPRLQEIND KDLVGFLSDYSAQYRVKNHLSYKLGKAILEIRDFKGFYLSVLDIIRVIRNHKRLKNSPRR YIDEANALKIQNSFPYRLGQLILTAHKNWYKGGYFKLFFDIRRLRDEK >gi|197283023|gb|ABQU01000027.1| GENE 28 24475 - 25341 934 288 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310057|ref|ZP_04809212.1| ## NR: gi|242310057|ref|ZP_04809212.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 288 1 288 288 562 100.0 1e-158 MENTDFKLRGLEQRLKQHNEHLINDLKLRLKQHNENLTVCFNLHQKVFLKYRDKHRAEEA MVLGSGPSLNYYQYDKSKIHIGCNRLFKTMDLDYLFLFDAEGTKEYLYDLFNFKNENTKV FLGHFLRDMEYDQDQSYWFHVHNIPEKFSQVFNSELYYIGRGASTPFTREIYTDLSIFPL MDYRTVVHHAFQFALFAGFKKIYIAGCDSQLNGYYDGSQQDVKWTGNSYDHVVAGWKKFK KFADVYYPDTEIISLNPVGLRGIFKDVYTRQYVYDHPELLREDIEIMD >gi|197283023|gb|ABQU01000027.1| GENE 29 25317 - 26558 387 413 aa, chain - ## HITS:1 COG:YPO0187 KEGG:ns NR:ns ## COG: YPO0187 COG0463 # Protein_GI_number: 16120528 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Yersinia pestis # 4 224 1 216 329 112 31.0 2e-24 MQMIENVKLSIIMPVYNAGKYLEDALKSVVDQKLPDMEIICVDDGSTDGSLEILEKFALL DARVKVFTQHRKGVGSARNLGLAKSVGKYIWFIDADDWIPHNSCEELYGIAEKNKADIVY FCVDYFDSMKQTIVENKWFNNFNGWVDEKYYNSLLSFEEYREFIFRLSGAIWHKFILRDF IIQNKIYFSENIFLMEDRLYCFDLFLKKPKIFFSLERFYTYRSNRIDNVMGRLSKDNILE LNIFYYFQEVYNRIQKQSKSIEQKELLNNLLECFVMYYYRCHVNFKNAYYNKVLKIMKVI KQTQNLRYLHSMDSFKRCENLFKKKNIVKIVDKDITLTYINLFNIAFFRIKKTPFIFLGK FLGIPIFTFRNKDGVSKKIFLEFHFLKKLKNRIKYAAIYLELSIKRWKIPILS Prediction of potential genes in microbial genomes Time: Tue May 24 02:14:12 2011 Seq name: gi|197283022|gb|ABQU01000028.1| Helicobacter pullorum MIT 98-5489 cont2.28, whole genome shotgun sequence Length of sequence - 5932 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 1, operones - 1 average op.length - 7.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 1551 671 ## CJE1603 capsular polysaccharide biosynthesis protein, putative 2 1 Op 2 . - CDS 1541 - 2257 718 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family 3 1 Op 3 . - CDS 2248 - 2742 367 ## COG2731 Beta-galactosidase, beta subunit 4 1 Op 4 1/0.000 - CDS 2742 - 3674 708 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 5 1 Op 5 1/0.000 - CDS 3664 - 4374 580 ## COG1083 CMP-N-acetylneuraminic acid synthetase 6 1 Op 6 . - CDS 4361 - 5374 793 ## COG0673 Predicted dehydrogenases and related proteins 7 1 Op 7 . - CDS 5379 - 5930 514 ## COG0279 Phosphoheptose isomerase Predicted protein(s) >gi|197283022|gb|ABQU01000028.1| GENE 1 3 - 1551 671 516 aa, chain - ## HITS:1 COG:no KEGG:CJE1603 NR:ns ## KEGG: CJE1603 # Name: not_defined # Def: capsular polysaccharide biosynthesis protein, putative # Organism: C.jejuni_RM1221 # Pathway: not_defined # 9 468 7 501 650 105 25.0 3e-21 MLNNDLELKKQLKVRNFEKIESILLSSKKYAAKYILFLYVTGRLEKCLKVIASSEIFLKR FAYLKNRIEKQYFLSKDYHNQKSLEVAYYINDLISKDIIDWNKVYNLIKRINCGIDRISF TEEYIFFIVSEKIKYELENKNKNFENLDMLNVFRYLSHPRFYKPYAQYVYSLGEIFQDCF KKPINENKKIAVCFHGVLRGNWKDIFQENIRKISQFYEIDCFLFAWDEKQVWPGVRPNWL VRFFSNEKWKNLDSLNDMNFFKEKYPNLYNKLKCEYFSKLTFDEKKDLSNIFKNFILQDQ NSFTIPSQYAAYTAYLYYYGKYMAFQAMKRYEQENNFNYKYVLVLRSDCIIECQNNCFDL KKINNGCIYDRVFGLGVATDYMFGCRNDIECVVSMFENISQISNNSLYNILNTHDTYYKW MLRNNIKIIPSNGFDISFWGNDKISKGFLIPNIKKEVSEYLQHKADDKCIIFLKKFLSNM KEMKYVSGFIDRDSRVYYPYNDFFQTKYGTAKSRIH >gi|197283022|gb|ABQU01000028.1| GENE 2 1541 - 2257 718 238 aa, chain - ## HITS:1 COG:XF2476 KEGG:ns NR:ns ## COG: XF2476 COG0483 # Protein_GI_number: 15839066 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Xylella fastidiosa 9a5c # 1 225 1 227 275 135 36.0 8e-32 MEMKELEVAKLACYKAGSFLLNLREKKINSISGKDIKLQADLDSEKIICEILSNAFSYPI LSEESYKINEEQKKGIYWVVDPLDGSLNFSQDIPLCCVSIALYKGDNPILGVIYDFNRDE MFSGVIGVGTWLNDKKIILSNKKKEKNQAVLATGFSSYMNYDKDGLMKFISYIQEFKKIR LLGSAALSLAYVACGRIDAYYEKDIAFWDIAAGVILAKQSQKKVCMVFKDNLGDIYVE >gi|197283022|gb|ABQU01000028.1| GENE 3 2248 - 2742 367 164 aa, chain - ## HITS:1 COG:CAC0836 KEGG:ns NR:ns ## COG: CAC0836 COG2731 # Protein_GI_number: 15894123 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase, beta subunit # Organism: Clostridium acetobutylicum # 46 160 38 151 152 68 37.0 7e-12 MAIITNIYHIHKFLGDCTALEYLYSVCNEAHKNRLRIFELPSKTCKKEYISSNFFALEQN YMTKSRNECFWESHKNFIDIQLHLNGIEQMEFIDITYLEILEEYNQEKDLVIYHDSPYSN KVIMRKNDIAIFFPEDAHLGMAMHNRISSNVVKTVIKYPIELWK >gi|197283022|gb|ABQU01000028.1| GENE 4 2742 - 3674 708 310 aa, chain - ## HITS:1 COG:BS_yoaD KEGG:ns NR:ns ## COG: BS_yoaD COG0111 # Protein_GI_number: 16078917 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Bacillus subtilis # 16 290 21 307 344 176 35.0 6e-44 MENKKIAVTTVAFSKNEYLRKKLNSHFRYVRFNDSLKRLKRDELKCFLKDAEGVIVGLDE IDEDILKEVKNLKVISKYGVGLNNVDFNATSKYGVSVVYSQGVNKRSVSELALGNILSLM RNSYVTSNKLKMQEWDKNGGVQLSGKNVGIIGVGNIGKDLISLLKPFGCVVYVNDIIQQD EYYKRNNLIKATKEEIYRKCDVITIHTPSNDLTRGMINKSVFAMMKKEAYFINTARGDII IQEDLKWALKEKIIAGAAIDVYDQEPPKDYEFISLPNLICTPHIGGNAKEAVLAMGESAI ENLVNYFREN >gi|197283022|gb|ABQU01000028.1| GENE 5 3664 - 4374 580 236 aa, chain - ## HITS:1 COG:MA3766_1 KEGG:ns NR:ns ## COG: MA3766_1 COG1083 # Protein_GI_number: 20092564 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: CMP-N-acetylneuraminic acid synthetase # Organism: Methanosarcina acetivorans str.C2A # 5 194 3 175 227 80 34.0 2e-15 MSKNKYIAEIPARLGSQRVKQKNLRLIEGEPMIAYAIKACKNASSISEVYVNTESDLIGQ VALDYGVKYYKRSQELALDHIVSDQFNYDFLKKVECEAVIMVNPVSPLIEAVDIEEAINF FEINQLDTLISVKNERLQSFYQGKALNFNKDGLLPMTQNIDPVQVCVWTICIWRRESFIE AYERDGYAVFNGKYALWPIDPLKSIKISYEEDFLLAEQLLKARKYCSKNEIKYYGE >gi|197283022|gb|ABQU01000028.1| GENE 6 4361 - 5374 793 337 aa, chain - ## HITS:1 COG:BH1248 KEGG:ns NR:ns ## COG: BH1248 COG0673 # Protein_GI_number: 15613811 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Bacillus halodurans # 2 228 4 240 340 122 32.0 9e-28 MVKVGIAGFGKIGRLRAQKILEKNYAQVVAIYDVKKPSDLRSDIIFCHSIDELLSQDIDV VFICTFVDSLAEYTKKALLAKKHVFCEKPPAKTSKELQEVIEVERNSGMILKYGFNHRYH YSVMEAKKIIDTKTMGKLLWMKGTYGKAGSIDYDKNWRNYKNKSGGGILIDQGIHMLDLM RYLSGEEFEKINSFVTNAYWNIEVEDNAFAIMKTYSNAIAMLHSSATHWKHKFLLEMYFE EGYINLDGILSGTRSYAPETLVVGRREFEDITFAMGKPKESITWFENDDSWEIEIREFLD AVKGEKSIVNGTSTDALKTLLLIEKIYNNSGFYNEQK >gi|197283022|gb|ABQU01000028.1| GENE 7 5379 - 5930 514 183 aa, chain - ## HITS:1 COG:jhp0791 KEGG:ns NR:ns ## COG: jhp0791 COG0279 # Protein_GI_number: 15611858 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoheptose isomerase # Organism: Helicobacter pylori J99 # 17 175 25 180 192 97 34.0 1e-20 TKEYILKLSQLLGEIDENVVADIVDLFERVSKNKNTVYIIGNGGSAATASHWANDFSAGL KRRNIININIRSLADNTPICTAIANDIGYENIFKLQLQDALTKDDVLFAISCSGTSPNIV NAVRYAKEVGATVIGATGFDGGDLLKLSDIKFHVQTPKGEYGLVEDVHMILDHIIYSYYM QRA Prediction of potential genes in microbial genomes Time: Tue May 24 02:14:18 2011 Seq name: gi|197283021|gb|ABQU01000029.1| Helicobacter pullorum MIT 98-5489 cont2.29, whole genome shotgun sequence Length of sequence - 1565 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1563 862 ## CJE1603 capsular polysaccharide biosynthesis protein, putative Predicted protein(s) >gi|197283021|gb|ABQU01000029.1| GENE 1 3 - 1563 862 520 aa, chain - ## HITS:1 COG:no KEGG:CJE1603 NR:ns ## KEGG: CJE1603 # Name: not_defined # Def: capsular polysaccharide biosynthesis protein, putative # Organism: C.jejuni_RM1221 # Pathway: not_defined # 7 520 14 520 650 114 25.0 7e-24 IHKNILDWNFDLVEEIYDRYLEQDVALQRQYCLFLYQIGKYLKLRDILLKCNLSAADMQY FNDRLNEAPLHIDFMPKKYYSPPYACYIINSKLLDNNLSPQECYNILYNVLLEPNKSHWA KFATIEQNALSCSYFMYKTLNFFLMNGNEEFLLESGNSYTALLHFLARRNFVGAKKYYSL LMEYLSHYYQMQEKQKKSPKFAICVSGPLRGDWKLSLDNLKKTLSDFDADYFLFSWDKAY LWTSILGATRWTQRRLAKAFDCVKLAEVDIGQFENFKKNFPNTYLKLSKDVKRDIDSEQH SILSKMFVRYLLEDEKEFERQYFSDSGYKEKLEMFAHIHKMFYGRYKAFKLIQQHEIDYK ITYDYIIMLRPDVDYSNIKQDFFKNLSYNEILARHEFSPANGILDFFYAGPRDAMEKMIA IYESMVLEKIDMFRDYRKRKINGQYFLQYWMYLHNLKAADCGVQCNIWHSIASKTIVFPN VTVELEQDLNKLYNSGIYSEQQLNNIKNFFDLAKKEYPMI Prediction of potential genes in microbial genomes Time: Tue May 24 02:14:43 2011 Seq name: gi|197283020|gb|ABQU01000030.1| Helicobacter pullorum MIT 98-5489 cont2.30, whole genome shotgun sequence Length of sequence - 66202 bp Number of predicted genes - 66, with homology - 63 Number of transcription units - 24, operones - 12 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 450 232 ## - Prom 588 - 647 7.3 - Term 683 - 725 -0.9 2 2 Op 1 . - CDS 868 - 3441 1677 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 3 2 Op 2 . - CDS 3442 - 5619 1158 ## COG4092 Predicted glycosyltransferase involved in capsule biosynthesis - Prom 5732 - 5791 9.2 4 3 Tu 1 . + CDS 5736 - 7805 1437 ## COG3563 Capsule polysaccharide export protein - Term 7730 - 7779 2.1 5 4 Tu 1 . - CDS 7791 - 8915 920 ## COG2829 Outer membrane phospholipase A - Prom 8950 - 9009 9.4 + Prom 8924 - 8983 12.0 6 5 Op 1 26/0.000 + CDS 9015 - 9779 708 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component 7 5 Op 2 2/0.000 + CDS 9776 - 10435 819 ## COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component 8 5 Op 3 4/0.000 + CDS 10436 - 11563 1082 ## COG3524 Capsule polysaccharide export protein 9 5 Op 4 . + CDS 11563 - 13287 1620 ## COG1596 Periplasmic protein involved in polysaccharide export 10 5 Op 5 . + CDS 13291 - 14511 576 ## COG3562 Capsule polysaccharide export protein - Term 14514 - 14554 1.1 11 6 Op 1 . - CDS 14560 - 15564 943 ## COG1087 UDP-glucose 4-epimerase 12 6 Op 2 . - CDS 15577 - 15930 297 ## Cla_0323 hypothetical protein 13 6 Op 3 . - CDS 15936 - 17306 1231 ## COG2124 Cytochrome P450 14 6 Op 4 . - CDS 17306 - 18439 482 ## Cla_0321 hypothetical protein - TRNA 18543 - 18619 81.4 # His GTG 0 0 - TRNA 18634 - 18711 92.9 # Pro TGG 0 0 - Term 18757 - 18797 5.2 15 7 Tu 1 . - CDS 18801 - 20687 2106 ## COG0326 Molecular chaperone, HSP90 family - Prom 20713 - 20772 11.0 + Prom 20846 - 20905 6.2 16 8 Tu 1 . + CDS 21036 - 23858 2781 ## COG0178 Excinuclease ATPase subunit + Term 23887 - 23925 -0.7 17 9 Tu 1 . - CDS 24057 - 24317 221 ## gi|242310083|ref|ZP_04809238.1| predicted protein 18 10 Op 1 . - CDS 24445 - 24552 122 ## 19 10 Op 2 . - CDS 24575 - 26785 1776 ## COG1193 Mismatch repair ATPase (MutS family) 20 10 Op 3 . - CDS 26782 - 27147 493 ## gi|242310086|ref|ZP_04809241.1| predicted protein 21 10 Op 4 2/0.000 - CDS 27147 - 28481 1220 ## COG0773 UDP-N-acetylmuramate-alanine ligase 22 10 Op 5 . - CDS 28472 - 29593 1123 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 23 10 Op 6 . - CDS 29595 - 31109 1558 ## COG0513 Superfamily II DNA and RNA helicases 24 10 Op 7 . - CDS 31166 - 32638 1089 ## Cla_0503 hypothetical protein 25 10 Op 8 . - CDS 32656 - 33342 442 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase 26 10 Op 9 . - CDS 33326 - 34570 1170 ## WS0604 hypothetical protein 27 10 Op 10 23/0.000 - CDS 34624 - 35283 659 ## COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain 28 10 Op 11 15/0.000 - CDS 35286 - 35522 373 ## COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component 29 10 Op 12 1/0.000 - CDS 35532 - 36248 832 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 30 10 Op 13 . - CDS 36259 - 37554 1477 ## COG0793 Periplasmic protease 31 10 Op 14 . - CDS 37624 - 39537 1987 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division - Prom 39559 - 39618 7.0 + Prom 39597 - 39656 8.0 32 11 Op 1 . + CDS 39692 - 42814 2907 ## COG0841 Cation/multidrug efflux pump 33 11 Op 2 . + CDS 42866 - 43621 726 ## COG0730 Predicted permeases 34 11 Op 3 . + CDS 43704 - 44243 190 ## COG3663 G:T/U mismatch-specific DNA glycosylase + Prom 44393 - 44452 6.7 35 12 Op 1 . + CDS 44473 - 44880 174 ## WS2156 hypothetical protein 36 12 Op 2 . + CDS 44882 - 45544 568 ## COG1385 Uncharacterized protein conserved in bacteria - Term 45747 - 45787 -0.5 37 13 Op 1 . - CDS 45837 - 46562 730 ## COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) 38 13 Op 2 . - CDS 46559 - 46891 447 ## JJD26997_1804 hypothetical protein 39 13 Op 3 . - CDS 46930 - 47994 898 ## gi|242310105|ref|ZP_04809260.1| predicted protein 40 13 Op 4 . - CDS 48015 - 48353 336 ## JJD26997_1805 hypothetical protein 41 13 Op 5 . - CDS 48346 - 49071 659 ## JJD26997_1806 putative nucleotidyltransferase 42 13 Op 6 . - CDS 49064 - 49696 632 ## COG0637 Predicted phosphatase/phosphohexomutase 43 13 Op 7 . - CDS 49689 - 50330 318 ## JJD26997_1808 hypothetical protein - Prom 50385 - 50444 6.1 + Prom 50343 - 50402 10.4 44 14 Op 1 . + CDS 50427 - 50975 418 ## WS0532 hypothetical protein 45 14 Op 2 . + CDS 50965 - 51360 252 ## gi|242310111|ref|ZP_04809266.1| predicted protein + Term 51481 - 51536 -0.9 46 15 Op 1 16/0.000 - CDS 51367 - 52371 1033 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 47 15 Op 2 14/0.000 - CDS 52386 - 53372 852 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 48 15 Op 3 . - CDS 53388 - 53543 274 ## PROTEIN SUPPORTED gi|239523411|gb|EEQ63277.1| 50S ribosomal protein L32 49 15 Op 4 . - CDS 53554 - 53919 334 ## WS1990 hypothetical protein 50 15 Op 5 . - CDS 53920 - 54333 555 ## COG0105 Nucleoside diphosphate kinase - Prom 54359 - 54418 9.8 51 16 Tu 1 . - CDS 54430 - 55131 561 ## COG1427 Predicted periplasmic solute-binding protein - Prom 55244 - 55303 6.5 + Prom 54992 - 55051 7.0 52 17 Tu 1 . + CDS 55274 - 56131 829 ## COG1639 Predicted signal transduction protein - Term 56121 - 56151 3.6 53 18 Tu 1 . - CDS 56169 - 56765 781 ## COG0450 Peroxiredoxin - Prom 56885 - 56944 9.9 + Prom 56791 - 56850 9.9 54 19 Tu 1 . + CDS 56932 - 58092 1571 ## COG0192 S-adenosylmethionine synthetase + Term 58100 - 58133 3.5 - Term 58086 - 58122 -0.3 55 20 Op 1 . - CDS 58185 - 59309 658 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 56 20 Op 2 . - CDS 59281 - 59403 199 ## - Prom 59523 - 59582 7.7 - TRNA 59574 - 59657 56.8 # Leu GAG 0 0 - Term 59662 - 59700 7.2 57 21 Tu 1 . - CDS 59706 - 60032 458 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K - Prom 60098 - 60157 5.7 58 22 Op 1 6/0.000 - CDS 60279 - 61073 744 ## COG1118 ABC-type sulfate/molybdate transport systems, ATPase component 59 22 Op 2 . - CDS 61152 - 61811 624 ## COG4149 ABC-type molybdate transport system, permease component 60 22 Op 3 . - CDS 61811 - 62206 393 ## gi|242310125|ref|ZP_04809280.1| molybdate ABC transporter 61 22 Op 4 . - CDS 62199 - 62954 1021 ## COG0725 ABC-type molybdate transport system, periplasmic component 62 22 Op 5 . - CDS 62967 - 63755 858 ## COG2005 N-terminal domain of molybdenum-binding protein - Prom 63831 - 63890 6.0 + Prom 63828 - 63887 8.4 63 23 Op 1 . + CDS 63925 - 64143 318 ## gi|242310128|ref|ZP_04809283.1| predicted protein 64 23 Op 2 10/0.000 + CDS 64153 - 64653 655 ## COG0066 3-isopropylmalate dehydratase small subunit 65 23 Op 3 . + CDS 64640 - 65701 1443 ## COG0473 Isocitrate/isopropylmalate dehydrogenase + Term 65725 - 65779 5.1 - Term 65626 - 65666 3.7 66 24 Tu 1 . - CDS 65705 - 66202 387 ## WS0320 hypothetical protein Predicted protein(s) >gi|197283020|gb|ABQU01000030.1| GENE 1 3 - 450 232 149 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKGNLKQFEVYYYLGNGPLNPNIEKFKNNKNEVTIFNRVESRVIMEAFWKAKGSDKERSP IMDYKEFYFLNDYSDFALENEKGLLMLHNSWTPYDYKNLNIEDFLIYKNTLSNIFLNILN LDFNRMYLDIRNKLHLRSLQIDSLNSQAQ >gi|197283020|gb|ABQU01000030.1| GENE 2 868 - 3441 1677 857 aa, chain - ## HITS:1 COG:BS_ggaB_2 KEGG:ns NR:ns ## COG: BS_ggaB_2 COG1887 # Protein_GI_number: 16080621 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Bacillus subtilis # 501 853 18 371 381 219 38.0 2e-56 MPLITAKKLEKLIRDPRLFFQDAFEKRLIPLGNALKKYKPKKREGYSKYVIVSAVYNVEK YLDDYFKSIINQRLDFEKNIHIVCVDDGSTDNSANIIKSYQKKYPKNITYLYKENGGQAS ARNLGLKYLQENESLKDKFTWVTFTDPDDFLDIGYFYEIDEFLASYLDDDICMIGCNIIF YHEKQKLYKDNHALNFKFKNGVQIRENYNLDNFIQLFTNSCFVNIDYMAEDIKFDEALKP NFEDAKFINEYLLKNINSKTAFLPKAKYFYRKREDGSSTLDSKLKSKDYYLNVTRSGYLE ILSDCVKNKRNIPLFIQNLVLYDLCWQIKPLINSPEKLSILNESEQQEYLNLLDKIFSFI EIETVVNFSLAGCWFFYKIGILNCFKNERPPFQIAHIEDYDPYKEQILITYYTGDDKGIE SILVDGEEVYADYKKIVKYDFLDRVFCYQKRLWVSIPKDAKDKLEMFNNNEQSMVGKYGE YFLDIKDIRKEFQKRLPKSNIWLLMDRDYEADDNAEHLYRYIMQNHPKQKIVFALRKESS DWKRLKREGFNLVEFGSYRFRKIINKSSKIISSHADSYLMRYITFRQQFIFLQHGVTKND LSKWLNSRKIDLFITSTKEEHNSIVNDYNRYKFGKKEVVLTGLARHDTLLKNNQNSIKQV LVMPTWRHYLSGLIIGSLGIRKLKDDFRESKYFQKWNSLLNSDVLQKLCKKYSYAIVFNP HPNIMPYLKDFEIPSFVSIANENKSLQDLFCKSSLMITDYSSVAFEMAYLGKSVIYYQFD KEEFFSSHTLQKGYFDYEKDGFGPVAENEENLLKQLENFLRNDCKPFGVYKDNIDSTFAF KDGKCCERNYKTIKYGK >gi|197283020|gb|ABQU01000030.1| GENE 3 3442 - 5619 1158 725 aa, chain - ## HITS:1 COG:Cj1442c_1 KEGG:ns NR:ns ## COG: Cj1442c_1 COG4092 # Protein_GI_number: 15792760 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted glycosyltransferase involved in capsule biosynthesis # Organism: Campylobacter jejuni # 1 333 1 330 336 403 60.0 1e-112 MPLLSVIIPFGLSREREYIEKRVINKAFEFCSDGEIEYIFVEGFSSYKSNIEQIIKERGH IYIKDDGQRFFSQGRCRNLGASYANAPVLFFLDVDYYLSRFSFEKVMDIIKYRNIANNIN QILCLPVVFLNKEGSDYLLSKDQTKWDMIVQDDLITGKSQWIKFFAPNSTSSIVINKHKF LEIGGNDERFVGHGYEDFDLLARILHSCVKFEKMPKNLLYDSRNWNFKDYKGFRAWFSIL GYEMSFYGIYLYHLWHIEPNQNFYMSNKEANHKLFYNHLKNLKKHSIKPLQIARAKDKKV LLICRFPKDILNVLRDVSVYLGDILHIQEDEFFRDDLFNCDQFLSFLQERKIDIVLFPNP YGNELRVKIYKFVRANNISYLCFDRGALPDSWFFDCNGFNADSLSYQLWDKELREDEIVK TKEYISKTLEEDNYLEKQDKRRSHLKKRLFLSDKKKIIFVPLQKSDDTVIKYFSNYFTYE KFLETIDELAKELSKTHIFVIKRHPLGDKILCSKYKNLIFVPDNTNIIDCLEMCHVVVCL NSGVGVYAMMLKKPCIICAEAFYYIEGVNFKVTSKQELLEALISEFVIDETKMIKFIHYL VYEFYSFGSVTYRRYSKKGKIYNKAINIDFYELQLQGKKVLSIKPYTKVYYRLKSLMYQA YAYELDNRNIFAWMMKVLMPDWLQMRISHTKFYRLFRKLLFDPRQFLNDSRKLHFINNIL YGKIR >gi|197283020|gb|ABQU01000030.1| GENE 4 5736 - 7805 1437 689 aa, chain + ## HITS:1 COG:Cj1414c KEGG:ns NR:ns ## COG: Cj1414c COG3563 # Protein_GI_number: 15792732 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsule polysaccharide export protein # Organism: Campylobacter jejuni # 6 689 16 689 689 642 51.0 0 MRKTNNFYNPIKKYVKFNTKIINNKTTFLGWGRKKSGRNALFLAKKFGGSYLLLEDGFIR SFGLGCEGSPSFSLVQDRIGIYYDSTTPSELENLLNTYDFHANPALLETAKEAINLITTH HISKYNHAPDVPQNYFAPTDSTPTRILIISQTQNDSSLIYGNANAFTTSQIIQDALAENP NCEIYLKIHPDVLSGRKKSDFNPSEIPAQIKLIYEDFNPISLLKHFKKVYTKTSQMGFEA LLVGCECVCYGMPFYAGWGLTIDKQTCPRRKRKLKLEEVFAASYILYSHYYNPFYQRKSD ILDTLQTLICYKHYYIKTNKKAFMFGFSLWKFLFAPFIPPFMPNFNPKNIIFINPLFSSH LKSALKKGLLQEALKQNCEIFIWGRKSFSEIETFAKEHSIPLTRVEDGFIRSISLGSDLT RPFSQVFDSSGIYFDATAPSELEEILNHTDFSPTLLNEAKILKDKILANKISKYNTNPHK SLNLPPNQLKILIPGQVEDDASIIYGAKGRTNLSLLKEVREKNPKAYILYKPHPDVLSGN RIGHIPDSTALQYCDEILTSVSLSSCLEAVNEVHTLTSLSGFEALLYGKKVVTYGMPFYA GWGLTIDKQTCPRRTRKLTLDELIAGAYILYPRYIHPKTLQLCHPLALIDALEEEKQKLQ NNRFYALKKRLYSLLSRKAQRLLRLLAIK >gi|197283020|gb|ABQU01000030.1| GENE 5 7791 - 8915 920 374 aa, chain - ## HITS:1 COG:Cj1351 KEGG:ns NR:ns ## COG: Cj1351 COG2829 # Protein_GI_number: 15792674 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane phospholipase A # Organism: Campylobacter jejuni # 143 373 95 328 329 173 42.0 4e-43 MGKNFNLAMIRQILFLAWASIFAFGAEFEGIGDLEFLPQKNLKILVLDEKMRVKKVLNFD SKESKHITLEVEKDEKIYLTIIHKDSNQEDSDQSKKQATENQDKSKLAKALKEEATITNA SPNIEKSAYEGRFERNRFMGGILGFEPDKFNYIMPLNISSSKEPNQRKQTEVKFQISIKK RLFDDLFLKDLDLYFAYTQQSFWQLYDSENSKPFRESNYAPSLYLSYPLKAYDLFFERVN FGYLHQSNGGDLEHSRSWDRIFIEGIYSYENFALSLKAWYRIPEDPNKDDNRDITKYLGY GELSVGYLWKKHLVSATLRNNLRSDNRGSILLDYSYPIYKNLYFYLQFFNGYGESLGDYN NSINRIGVGILFNR >gi|197283020|gb|ABQU01000030.1| GENE 6 9015 - 9779 708 254 aa, chain + ## HITS:1 COG:Cj1448c KEGG:ns NR:ns ## COG: Cj1448c COG1682 # Protein_GI_number: 15792765 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Campylobacter jejuni # 1 254 1 258 260 184 47.0 2e-46 MRDVIEALFFRELKTRFGKNRRLGYFWVVGEPMTHILFFLVIFTLIRARTIPQVPIEMFL VTGFVPFFMFRNIVTQIMAGVQANRALIAYKPVKPIHIFIARTLLEMCIYFAVFVLFMAG FGWFLDLPILPVHFLEVFIAFLGLAFLGFALGVCLAFLNSEVEYAQIFINYGINILYFGS AVLYPLWIMPDYIIEILLYNPVLQFLEILRENYFDGYPQIDGINFTYPLSFGIILLFIGL WYYYFRYKYLGQIR >gi|197283020|gb|ABQU01000030.1| GENE 7 9776 - 10435 819 219 aa, chain + ## HITS:1 COG:Cj1447c KEGG:ns NR:ns ## COG: Cj1447c COG1134 # Protein_GI_number: 15792764 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate transport system, ATPase component # Organism: Campylobacter jejuni # 1 219 1 219 220 330 69.0 1e-90 MIQLKNITKSYPLSNGQRHYVFKDLNFTFPDECSIGLMGRNGAGKSTLMRILGGMDMPDK GKVITDKKISFPIGLGAFFQGTLTARDNIKFLTRVYGYRGEKLKEKIAFVEEFAEIGKFF DEPINVLSSGMRARVSFGMSMAFDFDYYLIDEAGAVGDPAFKQKSAKIYQEKLSKSKVIL VSHSVAEIRKWCDKIIHLENGIVKVYDDVEEGIRAYQGK >gi|197283020|gb|ABQU01000030.1| GENE 8 10436 - 11563 1082 375 aa, chain + ## HITS:1 COG:Cj1445c KEGG:ns NR:ns ## COG: Cj1445c COG3524 # Protein_GI_number: 15792763 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsule polysaccharide export protein # Organism: Campylobacter jejuni # 1 375 1 372 372 348 56.0 1e-95 MEKLRLLFQKQKAKKISTILMSFNIVYILMIPVILYYLFIAADRYVSSITLSVRSMNSDI APVSGLASLVGINTGAREDVLFLQEYIHSLDMLKILDKDIHLKLLYQAQQKDPFFALSEE SDQERFLKFYQDRVKVIFDDTSGLLKVDVEGFTPQDAQIIANAILKESEKFVNEVSHKAA REQMAFAEKELLKAKERLQNAKNNLLAFQARYGVFDPLKQAEAKASLTNTIESQIATKET ELATMQSYLNENAPQIIMLKAEIEALKEQLNKETSKIVSSKNTKRLNDLAAKFQDLTIEA QFAQDAYTVALTSIETTRIESSRKIKQLVVIQGANEPQSPTYPRKLYNIITIFVILSVLY GIIKLITMIIEEHRY >gi|197283020|gb|ABQU01000030.1| GENE 9 11563 - 13287 1620 574 aa, chain + ## HITS:1 COG:Cj1444c KEGG:ns NR:ns ## COG: Cj1444c COG1596 # Protein_GI_number: 15792762 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein involved in polysaccharide export # Organism: Campylobacter jejuni # 1 571 1 552 552 656 60.0 0 MKKLLQFLFTFTFLSHFVYGVDVSSITSIPSSSAAQNIPADLQTTTPSATNTLTNTPQTQ PMQNPQPLLPPVFGAHLFSGNFTQASQSLYNPDYKIAVGDKINFRMWGAVEFQQELMVDS QGNVFIPNVGAINLLGVRNGDLVKVLKKGISRIYKQNVFVYADMNVYQNVSVFVTGNVNK PGLYQGLSSDSIVQYLDKASGINLDYGSFRNIEVLRDNKVVLEVDLYDFLFSGKIQLFPF RTGDVILVKNLENYAFAEGDVQKPFRFELKEDIKTLSDLARVSGAKPIVTNAIVRSYLSN NKIDINSYKQKEFSEVALKVGDEVEFRPDYSAENITIKIEGEHNGMHSMVVKKGTTLAEV VLRVKPNPQSNMDAIQVFRQSVAQTQKRLIDAQLKELETLALTSSSVTAQEASMRASHSK MVLEFIERAKNLTPKGQIVLENKSAYATTILEEGDIINIPTANNLVLVQGEVALPGAFIY EEDKNLDYYIKLAGDFTERANKKRILVIRANGKAERYDASWYAFASAPSLKPGDSLLVLP AIETGRGLQITSVLAQILYQIAIATSVVLDINNN >gi|197283020|gb|ABQU01000030.1| GENE 10 13291 - 14511 576 406 aa, chain + ## HITS:1 COG:Cj1413c KEGG:ns NR:ns ## COG: Cj1413c COG3562 # Protein_GI_number: 15792731 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsule polysaccharide export protein # Organism: Campylobacter jejuni # 5 388 6 387 394 372 51.0 1e-103 MQLKKVIQQFKNRKVLLLQGPVGPFFYHFAKGLKNNQAQVYKINFNGGDFIFYPFGAKSY RGSLQNFESFLQDFCKIHNIDCIIMFNDCRPIHKIAIQVADCLGLQTYIFEEGYIRPNFI TFENKGVNANSTLPKDPNFYLTCKEKSTYEEKNVKHSFRNMAWFAFLYWFNSFLFAWYFN NKLHHRSLSFTEMFPWFLSFLRKQWYKISEKEDREFILDSKENYFVLILQVYNDTQIKNH FEGRRIENFIKNSIRSFAKYSKKQHFLVIKHHPMDRGYKNYKKFIKRQTRKYNVTQRVIY IHEIHLPTLLKNALGCVVINSTTGLSSLLHKCPTKVCGNAFYNICGLTYQESLNKFWKAA KKFKINQNLFERFRSYLIDNVQINGSFYGKLAAKCPPPLTKSQAKL >gi|197283020|gb|ABQU01000030.1| GENE 11 14560 - 15564 943 334 aa, chain - ## HITS:1 COG:Cj1131c KEGG:ns NR:ns ## COG: Cj1131c COG1087 # Protein_GI_number: 15792456 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Campylobacter jejuni # 5 333 4 327 328 362 55.0 1e-100 MQTYFFTGAAGFIGSHTAYCFLKNSDCKIIVLDNLCTGFLENIQFLQEKFPNRIEFVQGN FGDSSCLETIFLKHKIDGIVHFAGSLVVSESVVNPLLYYNNNVANTLKLLEVVAKYGVNQ LLFSSTAAVYGQPNFSEPISEESQTLPINPYGESKLMVEKILRDFEVANPNFRSVILRYF NVAGALSEGGLGQRSKNATHLIKVACECACRKREKMGIFGEDYPTKDGTCIRDYIHIDDL ANAHFETLKTLEKEEHSQIYNVGYGVGFSVKEVIECVKKVSGVDFEVEIQPRRAGDPAML VSNNHKILTYTNWKPKYNDLELICKSAYEWEKKV >gi|197283020|gb|ABQU01000030.1| GENE 12 15577 - 15930 297 117 aa, chain - ## HITS:1 COG:no KEGG:Cla_0323 NR:ns ## KEGG: Cla_0323 # Name: not_defined # Def: hypothetical protein # Organism: C.lari # Pathway: not_defined # 1 117 1 117 117 201 77.0 9e-51 MKEKLAGTLLLCALVPLMIIGYLLIVFVGTFGKVSRVRQGVRALDHFVNATLFNGYAWES VSSHAWRERDKKWAKVVIKITDFFQKDHCKRANSREQPIIDLMLRKRLNEQTIGKQL >gi|197283020|gb|ABQU01000030.1| GENE 13 15936 - 17306 1231 456 aa, chain - ## HITS:1 COG:Cj1411c KEGG:ns NR:ns ## COG: Cj1411c COG2124 # Protein_GI_number: 15792729 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Cytochrome P450 # Organism: Campylobacter jejuni # 1 455 1 452 453 669 70.0 0 MGQCPFFPKPHKTKATLWTTFFLKRRSWLDGLYEKSYKMKSGRVKMPGFDLYIANNPKDV RRVMVDEVREFPKSDLLHFLLSPLLGESIFTTNGEVWKKQRELLRPSFEQARITKVFGLM NEAVEDLMIKFRAYPNNAIIEVDELMTFVTADVIFRTIMSQKLDEIKGKEILESFVIFQE ETVHTAIKKMFKIPQWITNLMGERKRIKAGESIREVLSNIIKPRYDLFHQGGGGEYQDIL SSLLAVVEVESGKPFSFEEILDQVAMLFLAGHETTASSLTWTLYILSISPKEQELAYQEI MEVAGKESFSIQHLRKMKYLTNVFKESLRLYPPVGFFARTAKKDTKMRNKLIKSGSGVVV APWLIQRHSDYWENPHEFDPTRFDKEIVKDTYLPFGMGERICIGQGFAMQESILILASIL REYKLELQENFVPDIVGRLTIRSANGMNIKFTKREN >gi|197283020|gb|ABQU01000030.1| GENE 14 17306 - 18439 482 377 aa, chain - ## HITS:1 COG:no KEGG:Cla_0321 NR:ns ## KEGG: Cla_0321 # Name: not_defined # Def: hypothetical protein # Organism: C.lari # Pathway: not_defined # 3 374 7 376 376 270 41.0 8e-71 MLQRDVFYIAGYDPRSCRYYYKLLKKNLNQQNKINHLDLKLSALCFEETLQGKKNAFCKI VSKHSVSNYYFLDWSDLVQKCWSKSLWDFICDFIYFLRAYIFSGIIKVFIQKSKTQLLAG LYPIVYFISSYAMVFFTAYILWDFLEKWNVYLATLVVLFYLWVATRVILWGGKRLAVFWL SNIYVFCAKYALGEVEGVERLLEGFLGQIMQSLKSNKDEVILCAHSVGTIFAVSVAARVI EQCKKERLSWEKLKILTLGQCIPLVSFQKQCEKFKEELAILGDSKVVWFDYTSKIDGACF PLLDFFRDSGVACKNPPCYLSPRFHKLFLPKTYAKIRYNWYLAHFLYLYATEISGEYDYF NFVGGPKILEQKIKGGR >gi|197283020|gb|ABQU01000030.1| GENE 15 18801 - 20687 2106 628 aa, chain - ## HITS:1 COG:HP0210 KEGG:ns NR:ns ## COG: HP0210 COG0326 # Protein_GI_number: 15644838 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone, HSP90 family # Organism: Helicobacter pylori 26695 # 3 628 5 621 621 753 66.0 0 MAKHTFQTEVNQLLDLMIHSLYSNKEIFLRELVSNASDALDKLQYLTLTDENLKSLSFEP KIEISFDSEKNTLTISDNGIGMNEQDLIENLGTIAKSGTKNFLSKLSGDKKKDSALIGQF GVGFYSAFMVASKIIVTTKKAGEAQGYAWISDGSGEFEIEKCEKEGQGSEIKLYLKDDEK EFTSRWRIEEIIKKYSDHIPFPIFLHYTETKSEGEGDSKKEIKEEKCEQINKASALWRVA KKDLKDEEYKEFYKNLSYDSNDPLAWIHTKVEGSLEYTTLFYIPQTAPFDLYRVDYKSGV KLYVKRVFITDDDKELLPSYLRFVRGIIDSEDLPLNVSREILQQNRILATIKSASTKKII SEIEALQKDEEKYAKFYKEFGRCIKEGVYSDFENKEKLLELLRFQSSKSEGKEISFKTYK ERMKEGQKAIYYLQGEDLELLKNSPLLESYQKQEIEVLFFGDEIDGFVMPMVNEFDKTPL RSIASKEALEDLGGETISEETQQKYKAILEGFKKALGDEIKEVRLSNRLVDAPACVVADP EDPNAAMMKMMKQMGAMGMGGDIPEPKPILELNPNHTILTKLLLSNDEAKTAEIAHLLLE EAKLLEGGKLKDVNSFVKRLNTLLEKTL >gi|197283020|gb|ABQU01000030.1| GENE 16 21036 - 23858 2781 940 aa, chain + ## HITS:1 COG:Cj0342c KEGG:ns NR:ns ## COG: Cj0342c COG0178 # Protein_GI_number: 15791710 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Campylobacter jejuni # 9 938 3 935 941 1359 71.0 0 MNQKISPLDHIIITNAKENNLKNIHLNIPKNKLVILTGLSGSGKSTLAFDTLYAEGQRRY IESLSSYARQFLDKIGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLYA RVGIQHCHLCGKPISQMSASDIIAQALKIPEESKVLILAPLIREKKGTFSDKLESLRQKG YVRVQIDGVLARLDENIELSKTKKHTIKVVIDRVVIKPENKDRIAQSIEKALKESYGEVE IEILGEGKSELIHFSEHLACFDCKVSFTPLEPLSFSFNSPKGACVKCDGLGIRYSIDTKK IIDKSLPLESGGIKIIYGFNKSYYNELFKAMCKANQIDSKKTFEELAEHQKKLILYGNNQ EIQFTWKSTKLKRPWSGIIAIAYDMFKDNKDLNDYMSEKVCEDCKGHRLLPQSLAVKVAN KTIGDILDMPIQECYGFFANEQNFAYFDSQQAMIAAPILKEICERLYFLYDVGLGYLSLG RDARSISGGESQRIRIASQIGSGLTGVMYVLDEPSIGLHERDTLKLIKTLRSLQQKGNSV IVVEHDKETIEHADFIVDIGPGAGKYGGEVVFSGNLTQLLSSNTQTAQYLNGTKKIEYFI RRNQEDWLEIKNVNINNIHNLNVKIPLKNFVCITGVSGSGKSSLILQTLLPVAQELLNNS KKVKKVDGVEIVGLEKLDKVIYLDQSPIGRTPRSNPVTYTGAMDEIRQIFAQTKEAQIRN YNISRFSFNVKGGRCEKCQGEGEIKIEMHFLPDILVKCDSCQGTRYNAQTLEVEYRGKNI AQVLEMSVDEACEFFAKIPKIYQKLKTLKDVGLGYITLGQNATTLSGGEAQRIKLAKELS RKDTGKTLYVLDEPTTGLHFADVDRLVKVLHHLTDLGNSVIVIEHNLDMIKNADFIIDVG PEGGSGGGNIVDSGTPERIAKRHKKTGSHTGKFLAKELGI >gi|197283020|gb|ABQU01000030.1| GENE 17 24057 - 24317 221 86 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310083|ref|ZP_04809238.1| ## NR: gi|242310083|ref|ZP_04809238.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 86 1 86 86 153 100.0 3e-36 MCEALAHTGMDNGVNLFGKMKGIHQERLKADSISEITTEIKKDISALDNNLIGGSDINGK IPNHIYQAQKEKAKDILFEILEEIRA >gi|197283020|gb|ABQU01000030.1| GENE 18 24445 - 24552 122 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKVLLLVGIIFVAFVASGCEKADYQHPSHRSSGK >gi|197283020|gb|ABQU01000030.1| GENE 19 24575 - 26785 1776 736 aa, chain - ## HITS:1 COG:Cj1052c KEGG:ns NR:ns ## COG: Cj1052c COG1193 # Protein_GI_number: 15792379 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Campylobacter jejuni # 2 736 7 736 736 627 49.0 1e-179 MKELIRKLDLEEFLKSYEGFLARPKELFLEGDSKTHLKFIGELEKIIFTPPKEVKNLDSA LALLKKFGYLKLDEIFEFVKIIRYFNYLKTLKIEGILWDWIDGIRIPEAILEVAKSFGEN GEIKKGIYLELDSITESLEGVKREISQQLNYILNQNKLTSYLVDRQIHLINDEECLLLKA GFHHVLKGQILNRSSAGFFYVLPQSIANLKDKSNALNNKKEEQIFHICREISTLFTKHLL FLKFINREFDRFDSYQARLMFAKSKNLEFLAAKSDDKKIVLNEFKHPALKNPKSISLDFN GQVLMITGVNAGGKTMLLKSIISAVFLAKYLIPLPINASKSSIASFKFIHLILEDPQNSK NDISTFGGRMLQFSQILNQREGIIGVDEIELGTDSDEAASLFKVLLENLIAKNNKIIITT HHKRLAALMAGNPKVQLLAALFDEKNQIPTFSFLDGTIGKSYAFETAVRYGIPKTLVNEA KILYGEDKEKLNELIENSSRLEMKLQMQIKQAEVKNAELEQKINHLKELEESLQQSYKTK TNELESLYQRAINEAKKAIKMQNQAEIHRQMNEANKILKVAKLQENQEKVSKIQNFEVGN RVKYRQSRGIIASIQKDEAMVLLDDGMKLRVPLGELDLSGNAPKIPQADFKVQSPKNANV VLDLHGMRAEEALEKLDEFISNSLIAGFDEVLIYHGIGTGRLSSVVREFLEKHPKVVEFM DAPPKSGGFGAKIVRL >gi|197283020|gb|ABQU01000030.1| GENE 20 26782 - 27147 493 121 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310086|ref|ZP_04809241.1| ## NR: gi|242310086|ref|ZP_04809241.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 121 1 121 121 202 100.0 4e-51 MVQYWLIIIAAVLVLFFVVQLLAQYQIIHKKSKIFLGIVLLLIAVGIGIFTAMQDKQDVK MTNLAQLFLQGKELICIVGIEKLEVSKETFNFISGTLTLVGREDSPYFRKTIPLKACDIK E >gi|197283020|gb|ABQU01000030.1| GENE 21 27147 - 28481 1220 444 aa, chain - ## HITS:1 COG:jhp0567 KEGG:ns NR:ns ## COG: jhp0567 COG0773 # Protein_GI_number: 15611634 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Helicobacter pylori J99 # 9 444 17 449 449 429 54.0 1e-120 MALKSFGSVHFIGIGGIGISALAKFLFAQGIKISGSDMAEGCITKELQSMGILIHIPHCK EAIKNPDLVIHSAIIKDSNIEVQEAKKKGIPVLSRKEALPLILANKQVYAVAGAHGKSTT TAILSAILQDCSALIGAESKEFGSNTRALKSEKIVFEADESDKSFLECNPYCAIVTNAEP EHMETYGHNLDKFYQAYKDFLALAQYRIINAEDAFLAKVDLECVRLYPSKDISEIEYFLD NNNPKTRFRLKNNHRDLGVFEVYGLGEHIALDASLAILAALECMELEEIRQNIQKFCGIK KRFDILSDDECVIIDDYAHHPTEIAATLKSLRKYQELIGKSSLCVIWQPHKYSRVRDNLK EFVECFEGVDKLVILPVYAAGEAKVEIDFRNLFAKYNPIFADFVKREKDSLGIYQGAQRI AKIKDGIIVGFNAGNLTYQLRGEI >gi|197283020|gb|ABQU01000030.1| GENE 22 28472 - 29593 1123 373 aa, chain - ## HITS:1 COG:HP0624 KEGG:ns NR:ns ## COG: HP0624 COG0436 # Protein_GI_number: 15645248 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Helicobacter pylori 26695 # 1 372 1 370 375 383 53.0 1e-106 MEFQPYPFEKLNVLIKDIPTKEGRISLTIGEPQFQTPDFISKALCQNVSLLNKYPKTAGE VELGEALRGFVQRRFGVSLREDEMVSTFGTREVLFNFPQFYLFDKESPTMSYPNPFYQIY EGAAIASRARVIHMNLTKENNFKPSLGVKEMQECDLVILNSPNNPTGSTLDLEELKQWVK WALEYNFVLLNDECYSEIYTQNKPFSILQASIEAGNKDFKNILALNSISKRSSAPGLRSG FIAGDKEILKGYAKYRTYVGCASPLPLQKAAIEAWSDDSHTEYSRAQYAENLHLAQEILG IEVPKETFYVWLFVGDDLEFTKKLLKEENILVLPGSFLSRNNGINPGSGYVRLALVYEKE VIKDALLRIKKWL >gi|197283020|gb|ABQU01000030.1| GENE 23 29595 - 31109 1558 504 aa, chain - ## HITS:1 COG:HP0247 KEGG:ns NR:ns ## COG: HP0247 COG0513 # Protein_GI_number: 15644875 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Helicobacter pylori 26695 # 14 504 22 492 492 503 54.0 1e-142 MEKATKKQMVNSGFGIFGFKKKVLDGIREVGFREPSPIQKEVIPIILDGLDVIAQAQTGT GKTAAFALPLVNGLKHNGSIEALVIAPTRELVMQIGDEIFKLGKYNKVRTVSLFGGQPIQ RQVELLAKKPQIVIATPGRLLDHLRNGRLKKFAPQIVVLDESDEMLDMGFLDDIEEIFSY LPSERQTLLFSATMPTPIKHLAQKILHNPKLVKITPSDTTNQDISQRYYIINEQEREDAI VRLIDSEMPTKAIIFTRMKKEADLLCERLVDRGYKAGALHGDMEQRERQKSIKAFKDSSV NILVATDIAARGLDISGVSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEFKE LRRIKENTKAKIELYEIPNLQDTLDKKDGNLLEKIVKYEITDEALRVYEQIRANIDITQL VCKLLSMVLQDNKILGPNKIGLDKEDLYHFKKQLQENDKRRTKETKKMSSKTNNASPKKR SNGHRNNKDSKNKRDSRAKNSKRR >gi|197283020|gb|ABQU01000030.1| GENE 24 31166 - 32638 1089 490 aa, chain - ## HITS:1 COG:no KEGG:Cla_0503 NR:ns ## KEGG: Cla_0503 # Name: not_defined # Def: hypothetical protein # Organism: C.lari # Pathway: not_defined # 1 477 1 479 479 277 37.0 5e-73 MHGKIVRYLSNNGKGVVINSSKMLFEFTKETWHDKKVIPMVGMYVEFRCDEYQKITSCKA SKFQDFKKEYLVTEMDFWKNESDEKLEALQSNKRDYIVQNIYQTTQYDNLQNIPLTLEVV QIIERYFYQEILAITFLNNLSLPKEPVLYDYVHFKRFGQKALDSLLYNDKTISKDEFIDE LNVIARLESAYNDFEHYSHLNIKNIFEKHFLAQQCHFQALLIAIDKAKNSQNYYLRRIEF LRGQILLLDKRIQNKNEVEKSLAKRERFQEELKSLLQDSTKAATRYSKLEILRRDFEEKY YKIFEVLFWQFYQRICKRVKEGLDVCITHLDDKIFLKSLHSLAYQKNYFKSLQNDRAPTI LYYMEQYLEHLNKERLNEADSLLYCQVEKIKKEHCKYFLIVTSDEKEVLWLKLKLLLQSK FYSVKVAYKQIVYFHLLREYQFEKIYIDGQNLWKDIKGIIEDVKSLKNNAKTPLVLISPK DKENRFGFFE >gi|197283020|gb|ABQU01000030.1| GENE 25 32656 - 33342 442 228 aa, chain - ## HITS:1 COG:HP1348 KEGG:ns NR:ns ## COG: HP1348 COG0204 # Protein_GI_number: 15645961 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Helicobacter pylori 26695 # 3 224 8 232 240 183 43.0 3e-46 MISKIRALSAMIYIALIIPFCIGFMYIFQKSHRKIRKITALFFVKLFNVKVKIIGKMDCE ARVLVMNHQSFMDVIYLEATHSNDLCWIAKKELGKPFLYGHALKAPKMILINRESKKELV HLLREAQDRLKDGRTLCIFPEGTRSKGEEKFLPFKSGAKVLVEHFGLKVQPIVFCGTRKC LDIGAMSFNNTPFTIKYLPSFIPQGENWFEELKEMMQKEYIELYKNNE >gi|197283020|gb|ABQU01000030.1| GENE 26 33326 - 34570 1170 414 aa, chain - ## HITS:1 COG:no KEGG:WS0604 NR:ns ## KEGG: WS0604 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 85 413 60 388 390 259 42.0 2e-67 MFPQGADSQDSSPQNFTQEKLEFSPAQKVQIPNQSSNPLFIDEEIKAKNRSIVDNAALES KEIQTTRENKTNSNYAEEYPSLVAKNVYLNLLNPPQDILYVNQIIPIEMKLLIFSDYSNI TTNFILENESIEVLNPNEKWILNQDSSLKNTFYFKIKQPSYTIPKIEVVVKTNEGEAKEA TQAIEGKAIVLERKGVYSQVVAQDLQILDTKITSYDSQNNLVVLQIQGNMANLFDFHLSA YSQQGIESKSGDYKESVIFYYVIVPKSLEVLSFDYFNIQSKKYVELQVENLSQDDRISTQ SDIKPKNTLQIYKILAAIFLAIVFFGLYFYKRKIIFLILGICVLAVLFYLLSIKTAVSLK PNAEIRIQPTFNSTIILKTKDVIEVKILADRHGYYKVLLEDERIGWVKEDDIQN >gi|197283020|gb|ABQU01000030.1| GENE 27 34624 - 35283 659 219 aa, chain - ## HITS:1 COG:Cj0514 KEGG:ns NR:ns ## COG: Cj0514 COG0047 # Protein_GI_number: 15791876 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain # Organism: Campylobacter jejuni # 1 216 1 214 223 268 62.0 8e-72 MSVAILQFLGTNCEYDMEHAFSLLDVPTKIVWHQEKELPKDTKLVVIPGGFSYGDYLRSG AIARFSPIMQDVIAFANNGGYVLGICNGFQILLESGLLPGAMKRNENLHFSSKNVLLRVV NNDNVFLQNFHKGDEVRIPIANADGNYYIDNEGLKELEKNGQILLEYVDYQNGSIKNIAG ICNKEKNVFGLMPHPERYVEKILGSDEGLKMLQGFLKIL >gi|197283020|gb|ABQU01000030.1| GENE 28 35286 - 35522 373 78 aa, chain - ## HITS:1 COG:msl0067 KEGG:ns NR:ns ## COG: msl0067 COG1828 # Protein_GI_number: 13470378 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component # Organism: Mesorhizobium loti # 1 78 5 82 83 77 51.0 6e-15 MKVEIIVSLKDGVLDPQGKAIGHALESLGHKDIKEVKVGKVITLEIAGEDRAAIQKEVEV MCESLLANTVIENYTIKM >gi|197283020|gb|ABQU01000030.1| GENE 29 35532 - 36248 832 238 aa, chain - ## HITS:1 COG:Cj0512 KEGG:ns NR:ns ## COG: Cj0512 COG0152 # Protein_GI_number: 15791874 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Campylobacter jejuni # 5 238 3 236 236 310 68.0 2e-84 MQVEQKEMMYEGKGKKLFNTSDENLVIAEFKDDLTAFNAEKRGTEVGKGALNCKISTEIF KLLGKNGIQTHYVDTLGENLMLCKRVQIIPIEVVVRNIATGSLSKRLGIKDGEKLPFVLV EFYYKDDALGDPLINDEHALILKCVKSVESLDILRKIGREVNEVLRQFFDSKNLLLVDFK LEFGVDKEGNILLADEITPDSCRFWDKDTKEKLDKDRFRQDLGNVKMAYEEVLKRILS >gi|197283020|gb|ABQU01000030.1| GENE 30 36259 - 37554 1477 431 aa, chain - ## HITS:1 COG:jhp1269 KEGG:ns NR:ns ## COG: jhp1269 COG0793 # Protein_GI_number: 15612334 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Helicobacter pylori J99 # 37 431 48 448 459 456 59.0 1e-128 MKVDIKKFFRPLLAVLAISFLAHSVAFAKEEVKEESRLEAYNKLRKVIGTVEKYYVDELT LNEIVDKAIDGLLSNLDAHSAYLDEKKFEELKIQTNGEFGGIGITIGLKEGALTIIAPIE GTPGDKVGLKSGDIILKINDESTLNMGIDEAVNRMRGKPNTKVQLTIVRKNVQKPMVFDI TRDNIKVESVYVRGIEDTNYVYVRVTSFDKKVSQRVEEELKKFKQIDGIVLDLRNNPGGL LNQAVELSDLFIQDGIIVSQKGRVKDEDIVYRASKNTPYPKVPLVVLVNNGSASASEIVA GAIQDNKRGVLVGETTFGKGSVQVILPTEEKEALRLTIARYYLPSGRTIQAVGVTPDVEV APGAVPTDDDKFSIKEADLQKHLEGELQKVDGKTAKKADKNDKNIITKEKILSDIQLKSA IDTLKVFKVID >gi|197283020|gb|ABQU01000030.1| GENE 31 37624 - 39537 1987 637 aa, chain - ## HITS:1 COG:jhp0199 KEGG:ns NR:ns ## COG: jhp0199 COG0445 # Protein_GI_number: 15611269 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Helicobacter pylori J99 # 4 625 6 617 621 810 63.0 0 MIYDVIVIGGGHAGIEASIVSAKMGCKTLLLTILVEQIGAASCNPAVGGLGKGHLVKEVD ALGGVMGYITDKCGIQFRTLNASKGPAVRGTRAQIDMDRYKIIAREICYQTQNLEISQQI VESLIVENQSVVGVKTSIGKEYRAKKVILTTGTFLRGKIHIGENISNNGRAGEPPAMELG DCLREMGLEVGRLKTGTCARIKASSINFAILEKHYGDIPTPYFSKQTQKELGNQEFSPTQ LPCYVTYTNAKTHEIIRNNFHRAPMFIGQIEGIGPRYCPSIEDKVNRFSDKERHQLFLEP QTLEANEYYINGLTTSLPFDIQEEMIHSIEGLENAEIVRYGYAIEYDYVNPTELKHTLET KKYKNLYCAGQINGTTGYEEAAAQGIFAGINASLSVQGREEIILKRNEAYIGVMIDDLVT KGTKEPYRMFSSRAEYRLLLREGNAIFRLGELAYNLGLMQEDEYQELLRDKKAIMEGIEW LNSTTITPTNEILAFLDLIGEEKISDKTTWRTIASRRSFDIHKLLKICEIIPTPFVGLSE RALEEILIEAKYANYIEKQQNLIDNMDKMLSIKIPQDFSFDGIPGLSLEVIEKLKKFTPK SLFEASEISGVTPASLEVLQLYIHLYHQKQNKLSQKD >gi|197283020|gb|ABQU01000030.1| GENE 32 39692 - 42814 2907 1040 aa, chain + ## HITS:1 COG:BMEI1629 KEGG:ns NR:ns ## COG: BMEI1629 COG0841 # Protein_GI_number: 17987912 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Brucella melitensis # 2 1026 1 1027 1051 1050 53.0 0 MISKFFINRPAFSAVISIIIVIAGFLCMFALPIEQYPKVTPTQVIVSGSYPGATAQTVST SVVSVLENSINGVEDMIYIQSSSPSSGANFTINVFFSNEANPDMAVVNVNNRVQSVLSQL PSEVQRLGITVQKGSTAVVGLYHIYSNNPNHDKIYIENYALLNIVDELKRISGINVELWS LQTYAMRIWLDPNKLLTYNLTPLEVISKIEEQNSQFAPGKFGAEPIAQSEFTYNITTKGL FTSKEEFENILIRSNPDGSSLRLKDLARIELGAQDYLQSNFYNDIPSVPIRVTLQPGANM LEASNAVNEQMERLSQKFPEGMQYSNPFRPTEFITASMEEVVKTFFEAIILVVLVIYLFL QNLRATIIPIIAIPVSIIGTFAGLYAFGFSINLLTLFGLILAIGIVVDDAIIVIENVERI MHTEHLNVKEATIKSMKEITGPVIAIVLVLSAVFIPVAFMGGFSGEIYKQFAITIVISVV ISGCVALSLTPALCAIFLKPTHKPAIYPVRKFNELFDKLTLKFSLQVGKILKRGLLFVLL FGGILFATYDLFKRIPTSLVPAEDMGNIIIHTILPEASSLSRTTEAQKFLIQQGLEHPLI TEMTTIAGYSFLAGNFKTSGGVAFYRLIDWNERKGKGQSDREIIESFGNHLKSYPNANFL LMQAPTIIGFDSSGINVYVQSKEGGSMEDLEKYTRLLIEKSLQRPEIGNIFTSLAVNTPQ YEVTLDREKASALNVNINDVFRTMQVTFGSYYVNNFELYNRTFRVITQAEQNFRQSPQDL QDIFVRSRDNHLVPLSSLLSFKRTIGADIVNRFNLFPAAQVIGFPAFGYSSGDAIKALEE VAKEILPQGYEIAYSGATYQEKVNASSGSIAFIFGLIFVFLILVAQYERWLMPLAVLSAV PFGVFGAALATWIRGLDNDIFFQVGLLVLIALAAKNAILIIEFAMHLREKEGLSIIESAI GAAKLRFRPIVMTSLAFTLGVLPLALSSGAGALSRHSISTGVIGGMLAATFLAVFFIPLF YMYLARFSEWTKNKRKALGI >gi|197283020|gb|ABQU01000030.1| GENE 33 42866 - 43621 726 251 aa, chain + ## HITS:1 COG:PM0361 KEGG:ns NR:ns ## COG: PM0361 COG0730 # Protein_GI_number: 15602226 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Pasteurella multocida # 2 250 1 250 254 194 48.0 1e-49 MLEFDILTLALLFGAAFLGGFIDSIAGGGGSITLPALLLSGISPLEALATNKLQGVFGSF SATRLFYKKGYINLKKCLPFAILAFAFSALGTISVQFINSDFLSKFLPFFIILFGFYFLF SPKIKEEQRATRFHKAYFLFALAGIGFYDGFLGPGTGSFLLLALIVLAGYGLTNALGEAK LYNFATNLASVIFFAIGGNMLFGVGLMMALGQFIGANLGSRAAIRYGIKIIKPLIVIVSF AMAAKLLYEQF >gi|197283020|gb|ABQU01000030.1| GENE 34 43704 - 44243 190 179 aa, chain + ## HITS:1 COG:Cj1254 KEGG:ns NR:ns ## COG: Cj1254 COG3663 # Protein_GI_number: 15792578 # Func_class: L Replication, recombination and repair # Function: G:T/U mismatch-specific DNA glycosylase # Organism: Campylobacter jejuni # 13 173 5 155 160 131 46.0 5e-31 MIKYPENSQKSPLCHPFEPIIFSDSKILILGSFPSVASRQESFYYAHKQNRFWKILEGLF DSPLHNQPKECKIAFLKSHHIALFDITQECYIQNSSDSTLKILKPNPIHSLIQNTQIQVI FTNGQKASKLYCQFFCHQDSPHFIPLPHIPLPSSSPANAKCTLPLLLREWSKILPYLTT >gi|197283020|gb|ABQU01000030.1| GENE 35 44473 - 44880 174 135 aa, chain + ## HITS:1 COG:no KEGG:WS2156 NR:ns ## KEGG: WS2156 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 3 120 4 119 137 62 39.0 6e-09 MESIIIELLTYHLWLCMPLFLFPLANLYALFFFPSHTKKLKILALVAPAYYLFLSASVFS GLVIWAMLGFVFNYKILAMLIIWLIVFIFEIKRHKKQKLIRVEADFNIREAFFKWAKTKY LFDFCAFGLIFILWS >gi|197283020|gb|ABQU01000030.1| GENE 36 44882 - 45544 568 220 aa, chain + ## HITS:1 COG:jhp1007 KEGG:ns NR:ns ## COG: jhp1007 COG1385 # Protein_GI_number: 15612072 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori J99 # 1 219 1 226 226 184 46.0 8e-47 MQFIIHKNAGEATLKLEGETYHHIFQSRRTKKSESLHLRNLKDSNLYIYNITNLSKKDAT LTLQSSQNTPLKNPPKGHLIWAMIDPKNIEKTLPFLNELNLQKITFFYAEYSQKNFKLNL ERIQRILENSCEQCGRITLLEIEVLENLQEVLEKYPNAGVLDFGGEEPKCSLEIPILVGT EGGFSKKEREALKNNPKYTATSCNILRSETAAIYAIARIL >gi|197283020|gb|ABQU01000030.1| GENE 37 45837 - 46562 730 241 aa, chain - ## HITS:1 COG:Ta1486 KEGG:ns NR:ns ## COG: Ta1486 COG1208 # Protein_GI_number: 16082448 # Func_class: M Cell wall/membrane/envelope biogenesis; J Translation, ribosomal structure and biogenesis # Function: Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) # Organism: Thermoplasma acidophilum # 4 233 6 227 359 63 24.0 3e-10 MNIVIPMAGLGSRFAKAGFAKPKPFIDVLGKPMIVRVLENLKCKNAKYILIARNEHLEQE KELVKEIENNFNACFVGIDKLTEGTACTVLYARKFINNDMPLLIANSDQIVDMDIADFIQ DSIQRKLDGSILTFIDKEKNPKWSFVRLENGYAVEIKEKEVISEFATVGIYLFSKGKFFV NGAIDMIVRNERVNNEFYTAPTYNYLIHEGLKIGHFVIDFSQMHGIGTPEDLMVYERLKN S >gi|197283020|gb|ABQU01000030.1| GENE 38 46559 - 46891 447 110 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_1804 NR:ns ## KEGG: JJD26997_1804 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 1 109 1 109 109 167 75.0 1e-40 MKVHRLEDMIRGWFVGDFEPSIFKTKDVEVGLKEYKKGDYEEKHHHKIATEITVIANGKV KMNDILYAKGDIIVIYPGEATDFEALEDTISIVVKLPSVKGDKYLGECKK >gi|197283020|gb|ABQU01000030.1| GENE 39 46930 - 47994 898 354 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310105|ref|ZP_04809260.1| ## NR: gi|242310105|ref|ZP_04809260.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 354 9 362 362 658 100.0 0 MPIYPPHFKRANLFIGSFLEFRLDKQADLAFIFTNQDEAHAFKNISSGIQYREIILSEEL QCGDKRIINIKKFYGLQRLQNKYKYIIVLDAETIVVKNINLMKMYRKFEKHKILYGNENL ANAEWIYSDSKKFFSLEEQDKIRNELYLWFNQPCIYICSHLKDFFDKTALNDLSRRKDEI TKGSFDYYIYMYYLILFCNYKVKDLDVVANYAFLETNAFVPQDSRYRKIRFYWSSAATYG FINSSNIFMLIHIDRGLEVLRRKLGLHSACSRIKNNLSYKIGKCIVEHSFFVLPFYLFEI IKTYKKNQRIIKYAFAEKLPTLNQYPDYPKALEMMDSSYYEIGNAFLRGRGDNI >gi|197283020|gb|ABQU01000030.1| GENE 40 48015 - 48353 336 112 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_1805 NR:ns ## KEGG: JJD26997_1805 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 1 107 1 107 111 125 62.0 4e-28 MLKDLTKQYIEAFNSKDINAVSVLLDKDFILCDPVVKRLEGKEKCLEAIKNIFDSCETLN FRANNIYRDSQTTFIEFILELDGVKLEGVDIIEWRDKKMVELRAYLDTKGSK >gi|197283020|gb|ABQU01000030.1| GENE 41 48346 - 49071 659 241 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_1806 NR:ns ## KEGG: JJD26997_1806 # Name: not_defined # Def: putative nucleotidyltransferase # Organism: C.jejuni_doylei # Pathway: not_defined # 1 241 1 241 241 334 71.0 2e-90 MLNIVVPIAGKSYFFDENKDGFPKPFIEICGKTMLEHFVENFSSIENKRFIFVLQERENK KFHIDDAILVLTNNASEIITLKNETGGMVCSVMMAVDFIENDEPLLVVNMDQVFELDLNE MIEKFKPYDAGVLSFESVHPRWAYVKCNSEGFVLQAYEKQPVSKNAIAGFYYFKNGKYFM NAAKIMIKKDVNYGGQYFIAPLLNELILENKSVFNISIDKNSYYTFYSPAKINEYERIKN A >gi|197283020|gb|ABQU01000030.1| GENE 42 49064 - 49696 632 210 aa, chain - ## HITS:1 COG:SPy0640 KEGG:ns NR:ns ## COG: SPy0640 COG0637 # Protein_GI_number: 15674711 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Streptococcus pyogenes M1 GAS # 1 188 3 189 218 94 30.0 2e-19 MIKAVIFDMDGVLIEAKDWHYEALNRALKIFGMEISRYEHLSVFDGLPTKKKLQMLSLDR GLPESLHTFINEMKQQYTMELVYSLCKPRFNHEFALMKLNNEGYKMAVCSNSIRRTIEIM MQKSALENYFDFYISNEDVKQGKPSPEMYEKAITKFGFNPKECLIVEDNENGIKAAMASG ANVMVVSEVDEVNYENIKYHINKFEKEGNA >gi|197283020|gb|ABQU01000030.1| GENE 43 49689 - 50330 318 213 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_1808 NR:ns ## KEGG: JJD26997_1808 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 1 213 1 212 212 275 62.0 9e-73 MKILSHRGWWQNENEKNTILAFQRSFQNSFGTEMDIRDYGGGGHLVISHDMGSKSSPAFE SCLALYAKNNYTFPLALNIKADGLQIPLKKLLTQYNVQNYFVFDMSIPDALLYLDMGFKV FTRQSEYEINPSFYDKACGVWLDEFHSHFIDEALILEHLKNGKAVCIVSPELHKRDYQNE WEEYKIIDQKLKENDKLMLCTDYPCKAREFFND >gi|197283020|gb|ABQU01000030.1| GENE 44 50427 - 50975 418 182 aa, chain + ## HITS:1 COG:no KEGG:WS0532 NR:ns ## KEGG: WS0532 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: Bacterial secretion system [PATH:wsu03070] # 27 122 3 102 163 81 48.0 1e-14 MVYLYLTKIKFSKRDRMQSTTQTTKTKKAFTMLELVFILVILGILAAVAIPKISASRDDA KLVALKSDINTLKSSFPAYFLSQGQGTFNSAISLSASNWNLGDFAISTTLESSNGSACVS AKLLNSSNGPQATNPNQARFLEISTTTTPNSNGDTCEKLIYQLDLNPSTPLIIPLLSNSI VF >gi|197283020|gb|ABQU01000030.1| GENE 45 50965 - 51360 252 131 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310111|ref|ZP_04809266.1| ## NR: gi|242310111|ref|ZP_04809266.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 131 1 131 131 217 100.0 2e-55 MYFKRSAFSLLEIILTLILLGILLSFALPKVFNYQQSACDKKLQLQVFNFKTALRTQIKT QNTQNPSIDLQKLYDTLDMHPSTCYFETQKNGFIGINQDKKVYFIIKNGILECEHTKSAT LHNGESYCDIF >gi|197283020|gb|ABQU01000030.1| GENE 46 51367 - 52371 1033 334 aa, chain - ## HITS:1 COG:jhp0188 KEGG:ns NR:ns ## COG: jhp0188 COG0332 # Protein_GI_number: 15611258 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Helicobacter pylori J99 # 4 333 2 330 331 390 57.0 1e-108 MEKKIYAALNSIGAYVPSKIITNDDLSKIVDTSDEWIQKRTGIKERRFAEATEATSDLAT KAARIALQRAKLNPEQIDMVILATISPDFFCMPSTACVVANNLGIINKPAFDISAACSGF IYLLALAKSLIESKACKNILIVGAEKLSSIIDMQDRSTCVLFGDGAGAAIISATEDKEAA ILDVRVASNGAYQDFLMTPGCGSRNPANARMLEERLQFIKMKGNETFKIAVKTLTNDVIE IMKANNLTKDDIDFFIPHQANSRIISAVGEALEFPSDKVVKTVHKYGNTSAASIPMAIND YYQEGKIKNGSKLLLDAFGGGLTWGSAILTFNGD >gi|197283020|gb|ABQU01000030.1| GENE 47 52386 - 53372 852 328 aa, chain - ## HITS:1 COG:Cj0329c KEGG:ns NR:ns ## COG: Cj0329c COG0416 # Protein_GI_number: 15791697 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Campylobacter jejuni # 1 326 2 326 328 362 57.0 1e-100 MRIAVDAMGGDFGASPLVEGALWALKEKDFSLVLIGDEKILAPLIPAQVSKEVKIVHCDD FIAMDDSATAALKRKESSIYVAMEMLKSKQVDAVVSAGHSGATMSLATLKIGRLKGINRP AICTLMPRIDGNKSLVIDAGANVDCKPENLFEFGVMGHEYAKWILKYPNARIGLLTNGEE ECKGNETSKAAFELLKTHPNFLGNIEGNNIFDSSVEVVVCDGFVGNVVLKTSEGVADSIV YLLKKYIKASPISLFGALFLKGVFKKLKKQIDYAEYGGAPLLGIDGNVIICHGKSNAKAM KNAIFQAIATIENGINDKILESLEKYKN >gi|197283020|gb|ABQU01000030.1| GENE 48 53388 - 53543 274 51 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239523411|gb|EEQ63277.1| 50S ribosomal protein L32 [Helicobacter pullorum MIT 98-5489] # 1 51 1 51 51 110 100 3e-23 MAVPKRRVSKTRAAKRRTHYKITLAMPVKDKDGTWKMPHRVNKFTGNYKNQ >gi|197283020|gb|ABQU01000030.1| GENE 49 53554 - 53919 334 121 aa, chain - ## HITS:1 COG:no KEGG:WS1990 NR:ns ## KEGG: WS1990 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 50 121 42 114 118 63 50.0 2e-09 MNKIPFNRAFQSCKNGEKIPFFIEKDAIKFEGVLAYDSSHREFIKLCGTIRGTIELICDL SGESYNEELNEDLEFYLSNGQIDLDSEHFEDIVECENGQIDLEEILRSELEMIRCDYHIK E >gi|197283020|gb|ABQU01000030.1| GENE 50 53920 - 54333 555 137 aa, chain - ## HITS:1 COG:Cj0332c KEGG:ns NR:ns ## COG: Cj0332c COG0105 # Protein_GI_number: 15791700 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Campylobacter jejuni # 1 137 1 137 137 208 81.0 2e-54 MEQTLSIIKPDAVKKNVIGKIVDRFESNGLRIAAMKKVQLSECDAQEFYAIHKSRPFFND LVAFMVSGPVVVMVLEGLNAVAKNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSL ENAEKEIRFFFAEREIC >gi|197283020|gb|ABQU01000030.1| GENE 51 54430 - 55131 561 233 aa, chain - ## HITS:1 COG:HP0778 KEGG:ns NR:ns ## COG: HP0778 COG1427 # Protein_GI_number: 15645397 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Helicobacter pylori 26695 # 1 233 1 227 227 196 48.0 4e-50 MRFGKIDYLNLLPFEVFIRSYPTTSQFMLFYRKNKSYPAKLNKEFLFGRIDAGFVSSITA LRAKSERFFASQVGIVAKREVLSVICIQGKEGSDYQSATSNALLKVLGLKGRVLIGDRAL FEVLRQKVQGEKNYIDMGEYWYQKGGLPFVFGRLCVRKDFKSCEKIIQAFSKSHIKIPYY LLNEASKNTKIAKKDIIEYLKVLSYKIDKKANFGAERFYRELRILGIKAPKRF >gi|197283020|gb|ABQU01000030.1| GENE 52 55274 - 56131 829 285 aa, chain + ## HITS:1 COG:Cj0248 KEGG:ns NR:ns ## COG: Cj0248 COG1639 # Protein_GI_number: 15791619 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein # Organism: Campylobacter jejuni # 1 282 5 284 285 295 54.0 8e-80 MNPLLLETIKNLPPLPSTVEELRNYIDSNGANLEINKIATIISKDPLLVAELLRLANSPF FGFSRQVSTIQQVISLLGINNIKNIVLANSLKSTFHIDVSPYGLNTADFLNNCSKEVDFI SNWLKEEDKALANTLVPCAMLLRLGMILLSDMLIKSNKSEQFLQENKAHNFQDIHEIENH YCGIDSISFLGFLFDYWKFDEILIQSIAHIDNPHAASSEIKKNAYALAITNCLFEPYAPF SLFNSKKAIALLNEAKNQEINFDMSNFLANLPQEAKNNLAKEIED >gi|197283020|gb|ABQU01000030.1| GENE 53 56169 - 56765 781 198 aa, chain - ## HITS:1 COG:HP1563 KEGG:ns NR:ns ## COG: HP1563 COG0450 # Protein_GI_number: 15646170 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Helicobacter pylori 26695 # 1 198 1 198 198 324 77.0 8e-89 MLVTKKAPNFKAPAVLADNQIVEDFELARNLGRNGAVVFFWPKDFTFVCPSEIIAMDHRV KAFAEKGFNVIGVSIDSDVVHFAWKNTPVNQGGIGNVQFPMVSDITKQISRDYEVLIDEA VALRGSFLIDKNQVVRHAVINDLPLGRNMDEMLRMCDALTFFEEHGEVCPAGWNKGDKGM KADAKGVAEYLSQNADKL >gi|197283020|gb|ABQU01000030.1| GENE 54 56932 - 58092 1571 386 aa, chain + ## HITS:1 COG:HP0197 KEGG:ns NR:ns ## COG: HP0197 COG0192 # Protein_GI_number: 15644826 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Helicobacter pylori 26695 # 1 383 1 383 385 635 78.0 0 MKKEFLFTSESVTEGHPDKMADQISDAILDYIIERDPKARVACETLLSNGYCVIAGELKT HTYAPMQDIARRVIREIGYIDAKYGFDYRSAGVLNGVGEQSPDINQGVDREDGEIGAGDQ GLMFGYACRETDVLMPLPIYLSHRITERLAALRKDGTLPFLRPDGKSQVTIKYSNGIPTE IDTIVVSTQHSPETSQEMLRSAVIEEVIKKALPQEFASNNIRYFVNPTGKFVIGGPQGDA GLTGRKIIVDTYGGSCPHGGGAFSGKDPSKVDRSGAYAMRYVAKNLVASGICDKATVQIA YAIGVVEPVSILVNTHGTGKVEDSKIEECVKKLFRLTPKGIIESLDLLRPIYQKTASYGH FGRELPEFTWEKTDKAEAIKDYFNLK >gi|197283020|gb|ABQU01000030.1| GENE 55 58185 - 59309 658 374 aa, chain - ## HITS:1 COG:BS_gspA KEGG:ns NR:ns ## COG: BS_gspA COG1442 # Protein_GI_number: 16080894 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Bacillus subtilis # 65 243 89 258 286 87 28.0 4e-17 MLRGGGGAYNFHLLMDFVSQETKEKLQNLILELSKIYPCTLNIHILEDEIFRTQSLRTLN GNYLAYYRLRIGSALPLSIKRCVYLDVDMIVLGDLRELFKINLQGKICGVVMEGKDNDTQ NILESKNKINKSIAIVSNYFNSGMLLVDLDLWRKENIEDRAFEIVKKYYCHKHDEHILNA VLQGQTFKILPQWNMMVFLYCRAVCLNERGKINMPYNRKDFNNALKNPKILHYHTHHKPW EDSKIYLNYCNKFLGQYWWDMVEQTPIFKEKLLQLKPQADSALAFQCLVGYKLLRYYQKG LFILIPFYTYFLIKNKDSIEQEEIPLKDYNLAREIGRAAFNAYHKRKKGKLISFPFRMLH IIKNFRKNQARILG >gi|197283020|gb|ABQU01000030.1| GENE 56 59281 - 59403 199 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYPIVFNLNESYVPYASVLMTSIIQNTNKDSNVAGGGGRV >gi|197283020|gb|ABQU01000030.1| GENE 57 59706 - 60032 458 108 aa, chain - ## HITS:1 COG:Cj0936 KEGG:ns NR:ns ## COG: Cj0936 COG0636 # Protein_GI_number: 15792265 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Campylobacter jejuni # 1 100 1 108 112 79 65.0 1e-15 MKKILLAFFALASVAFAAEGAGEMLLSYSAIAAGIGLGIAALGGAIGMGSTAAATISGMA RNPGVGGKLMTTMFIALAMIEAQVIYTLVVALILLYANPFTGMLGLGL >gi|197283020|gb|ABQU01000030.1| GENE 58 60279 - 61073 744 264 aa, chain - ## HITS:1 COG:Cj0300c KEGG:ns NR:ns ## COG: Cj0300c COG1118 # Protein_GI_number: 15791668 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate/molybdate transport systems, ATPase component # Organism: Campylobacter jejuni # 3 262 29 289 294 226 46.0 4e-59 MRELITLFGKSGAGKTTILRILAGLTTPDFGIIKVQDSIWFSSKDKINIPPQKREIGFVF QDYALFPNMSIEENLLFALPKRGDKKHIEELLEIVELQNFRKVKPSMLSGGQQQRVALIR ALVRNPKILLLDEPFSALDASMSQRLQEELLKIHQKFELTTFFVSHNLADVFYLSQYVLH LNNGVVDRQGTPSEVFLKDLPSGKFRQSGTIVEISVNGLVAIVRVLVGNWSIEVVVSKSE GENLKVGDLVLVSSKAWNPIIVKL >gi|197283020|gb|ABQU01000030.1| GENE 59 61152 - 61811 624 219 aa, chain - ## HITS:1 COG:Cj0301c KEGG:ns NR:ns ## COG: Cj0301c COG4149 # Protein_GI_number: 15791669 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, permease component # Organism: Campylobacter jejuni # 3 217 6 220 224 194 55.0 1e-49 MDFVQTMLLTFKVSILTTFLLLLIAIPLGYFLAFSKSKIVPFLETIVSMPLVLPPSVLGF YLLIAFSPQNIFGKFLLETFGLKLVFSFEGLIVASVIFSLPFMVNPIQAGFRSIPKSIFE AALTLGKGPLEILWRILLPNIKHSVLIGIIMAFAHTIGEFGVVMMIGGNIAGETRVASIA IYDEVESLNYALAHQYALILFIITFCILLLTFYLNKKSA >gi|197283020|gb|ABQU01000030.1| GENE 60 61811 - 62206 393 131 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310125|ref|ZP_04809280.1| ## NR: gi|242310125|ref|ZP_04809280.1| molybdate ABC transporter [Helicobacter pullorum MIT 98-5489] # 1 131 47 177 177 201 99.0 2e-50 MNNFVGILKQIQSYNGISRLTIEIGDETISVLLVEELSLELIGQNLELCFKETNVLVALR IEGVGNSFCSKIVEIQEDELFARIILESHLAKNGNITALVSLDFINQNALKIGSEVFWHI SENEIMLLGVG >gi|197283020|gb|ABQU01000030.1| GENE 61 62199 - 62954 1021 251 aa, chain - ## HITS:1 COG:HP0473 KEGG:ns NR:ns ## COG: HP0473 COG0725 # Protein_GI_number: 15645101 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, periplasmic component # Organism: Helicobacter pylori 26695 # 10 251 10 246 246 192 43.0 5e-49 MLHKVIFLIFCLVGFTSSVYAEQIRVLGAASLKYVLEEIKNDFLKDRKNDEIEISYISSG KAYAQIKNGAPVHLFVAADVSYPAKLYADKLAPQKEEIYAKGKLVLWSNNADFKVTDFKD ILNPKIQHISIPNPKVAPYGRASIEALESTKMLEKVQEKFVIGESIGGATTYVESKNAEV GFTALSMLGKNGIDTPTMTFVAIDEKLYKPIEQALIITNYGKDSKLAQEFKDYILGQKGK EKFIQFGYSVE >gi|197283020|gb|ABQU01000030.1| GENE 62 62967 - 63755 858 262 aa, chain - ## HITS:1 COG:RSp1153 KEGG:ns NR:ns ## COG: RSp1153 COG2005 # Protein_GI_number: 17549374 # Func_class: R General function prediction only # Function: N-terminal domain of molybdenum-binding protein # Organism: Ralstonia solanacearum # 1 262 2 268 269 136 34.0 5e-32 MEVQGRIWIKENNKNFLGHGKVELLERIAESGSIAKAAREMKMSYKAAWDSIDMMNKISQ QPLVLRATGGKGGGGTQITEKGREAIKIFREMEEIQERLLKLFEVDLKEWDNVTKNTIFG RQFMLKTSARNQLLGEIVAIKEGKVNAEVTLQISQDLQIVSIITLQSLKEMGLALGMQVY ALVKASWIVIFTQKPSENSLQNCMCGEIKAISDGAVNCGITIQSGEIEFGAVITEDSKNN LALEVGQKVWFGFKANDVILGI >gi|197283020|gb|ABQU01000030.1| GENE 63 63925 - 64143 318 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310128|ref|ZP_04809283.1| ## NR: gi|242310128|ref|ZP_04809283.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 72 1 72 72 123 100.0 3e-27 MTIINQENGEILVQNVKVSSLETLFLSIEHALKTNEIEPQRIFFKNIPQEAKKKLLSKDW YWNGSKLEIYQD >gi|197283020|gb|ABQU01000030.1| GENE 64 64153 - 64653 655 166 aa, chain + ## HITS:1 COG:PAB0892 KEGG:ns NR:ns ## COG: PAB0892 COG0066 # Protein_GI_number: 14521550 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase small subunit # Organism: Pyrococcus abyssi # 1 156 3 159 164 200 60.0 9e-52 MQGKAWKFGDNIDTDLIIAARYLNTSDEKFLASHLMEDARANFTQEISKGDIIVAGENFG CGSSREHAPVAIKAAGIAAVIAKSYARIFYRNAFNTGLPILEIKETDLINEGDVLEIDLK AGIIHNQTQKTQYHFTPIPPFMLELLECGGLIPYAKTQKGNQNEKL >gi|197283020|gb|ABQU01000030.1| GENE 65 64640 - 65701 1443 353 aa, chain + ## HITS:1 COG:aq_244 KEGG:ns NR:ns ## COG: aq_244 COG0473 # Protein_GI_number: 15605790 # Func_class: C Energy production and conversion; E Amino acid transport and metabolism # Function: Isocitrate/isopropylmalate dehydrogenase # Organism: Aquifex aeolicus # 1 349 1 353 364 409 57.0 1e-114 MKNYKIAVIKGDGIGPEIINEAVKVLKVVGEKFSFRLDFEDYLMGGIAYDLTGNPLPNET IEGCLKADATLFGAIGGEKWDNLPRDLRPESGLLRLRKSLEVFANLRPAKVYDELIEAST LKPEIVSGVDILVVRELIGGIYFGTPKGRDKERGFNTMVYSVSEVERIAHTAFKAAQKRN KKVCSVDKANVLDVSQLWREVVSEVAKEYPDVELSHMYVDNAAMQLIRYPKQFDVILTGN LFGDILSDEASMLSGSIGLLPSASIGGKAAVYEPIHGSAPDIAGMGIANPIATIASASML LRYSLGEIDAANAIDNAIETTLKKGYRTKDIANFGAKEICSTEQMGSIIAQNI >gi|197283020|gb|ABQU01000030.1| GENE 66 65705 - 66202 387 165 aa, chain - ## HITS:1 COG:no KEGG:WS0320 NR:ns ## KEGG: WS0320 # Name: thiB # Def: hypothetical protein # Organism: W.succinogenes # Pathway: Thiamine metabolism [PATH:wsu00730]; Metabolic pathways [PATH:wsu01100] # 1 164 20 184 189 122 41.0 3e-27 ENFYQRILDSHQIDFACYRDKQNVFNPSLLEVFLKLNQYYKIPSLVNSNLAIALKFGFDG LHCNGMQMQQIAEAKKKISLVFYSAHSSKEILQADLEGANGITISPIFKTQNKGQPLGID FLEKLNPKNYQAEIFALGGIIGAKEVEAISKTSIKNFASIRYFLS Prediction of potential genes in microbial genomes Time: Tue May 24 02:16:23 2011 Seq name: gi|197283019|gb|ABQU01000031.1| Helicobacter pullorum MIT 98-5489 cont2.31, whole genome shotgun sequence Length of sequence - 9416 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 3, operones - 2 average op.length - 5.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 53 - 733 843 ## COG0356 F0F1-type ATP synthase, subunit a 2 1 Op 2 3/0.000 - CDS 796 - 1272 412 ## COG1714 Predicted membrane protein/domain 3 1 Op 3 3/0.000 - CDS 1281 - 1892 751 ## COG0461 Orotate phosphoribosyltransferase 4 1 Op 4 3/0.000 - CDS 1904 - 2464 793 ## COG0233 Ribosome recycling factor 5 1 Op 5 . - CDS 2475 - 2819 460 ## COG1314 Preprotein translocase subunit SecG 6 1 Op 6 1/0.000 - CDS 2887 - 4428 1883 ## COG0119 Isopropylmalate/homocitrate/citramalate synthases - Prom 4459 - 4518 10.5 7 2 Op 1 14/0.000 - CDS 4558 - 5292 648 ## COG1183 Phosphatidylserine synthase 8 2 Op 2 1/0.000 - CDS 5292 - 5894 383 ## COG0688 Phosphatidylserine decarboxylase 9 2 Op 3 3/0.000 - CDS 5905 - 7833 1160 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 10 2 Op 4 3/0.000 - CDS 7842 - 8669 1424 ## PROTEIN SUPPORTED gi|239523438|gb|EEQ63304.1| ribosomal protein L11 methyltransferase 11 2 Op 5 . - CDS 8672 - 9046 505 ## COG0784 FOG: CheY-like receiver - Prom 9071 - 9130 12.5 12 3 Tu 1 . - CDS 9154 - 9414 270 ## COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase Predicted protein(s) >gi|197283019|gb|ABQU01000031.1| GENE 1 53 - 733 843 226 aa, chain - ## HITS:1 COG:Cj1204c KEGG:ns NR:ns ## COG: Cj1204c COG0356 # Protein_GI_number: 15792528 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Campylobacter jejuni # 1 223 1 224 226 245 65.0 5e-65 MNSIFTFAGLISHDHDFIIAFHVILVAIIAVILAKLATSKMQVVPGAVQNVFEAFLGGVI FMAKDVIGEEKARQYLPLTATLAFFVFLANAIGIIPGFEAPSSSLSFTLTLALVVFVYYN FEGIRTFGVVKYFAHFAGPVKALAPLMFPIEIISHCSRVVSLSFRLFGNIKGDDMFLLVM LMLAPWVAPLPAFLILTFMAFLQAFIFMILTYVFLAGAVLASEEAH >gi|197283019|gb|ABQU01000031.1| GENE 2 796 - 1272 412 158 aa, chain - ## HITS:1 COG:HP1258 KEGG:ns NR:ns ## COG: HP1258 COG1714 # Protein_GI_number: 15645872 # Func_class: S Function unknown # Function: Predicted membrane protein/domain # Organism: Helicobacter pylori 26695 # 35 137 30 132 154 77 37.0 1e-14 MSKQWRKLKKQGFSKTSIESNLTNKTEILATFWERGKAQVIDTFMIYLPLLYFLTYVVIG SAQGFRESQWGPLIAVLIYGVIVALLMATKGQTPGKKAYDLWVRRNENQPIGFFFSLLRF FLFLFSGFTLVGLLMPLWRKDKKALHDLILKTSVYKKG >gi|197283019|gb|ABQU01000031.1| GENE 3 1281 - 1892 751 203 aa, chain - ## HITS:1 COG:jhp1178 KEGG:ns NR:ns ## COG: jhp1178 COG0461 # Protein_GI_number: 15612243 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Helicobacter pylori J99 # 1 203 1 201 201 266 68.0 1e-71 MDIMQIYKNANALLEGHFLLSSGKHSPFYLQSAKVLENPKTAEELARALAEIIRDCGVQI DCVCSPALGGILAGYELARALGVRFIFTERVNGAMTLRRGFEVSEGEKILVCEDIITTGG SAMEAAKEVQKLGAKVVAYAALANRGICNRYKSPNSFDATECKLDSNLPLFALEDFVFET YTPENCPLCKQGSVAIKPGSRGN >gi|197283019|gb|ABQU01000031.1| GENE 4 1904 - 2464 793 186 aa, chain - ## HITS:1 COG:HP1256 KEGG:ns NR:ns ## COG: HP1256 COG0233 # Protein_GI_number: 15645870 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Helicobacter pylori 26695 # 3 186 2 185 185 224 72.0 1e-58 MSLQEIYNHTQETMNKSIEAMKKEFGTLRSGKVSVAILDHIRIDYYDTPTPLNQVGSVIA QDASTIVVTPWEKNLLKEIERAIQEANIGVNPNNDGEAIKLFFPPMTSEQRKEIAKEAKN IGEKAKIAIRNIRKDSNDKVKKLEKDKTISEDESKKAQDEIQKFTDNAVKKIDELVKHKE EELLKI >gi|197283019|gb|ABQU01000031.1| GENE 5 2475 - 2819 460 114 aa, chain - ## HITS:1 COG:Cj0235c KEGG:ns NR:ns ## COG: Cj0235c COG1314 # Protein_GI_number: 15791607 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecG # Organism: Campylobacter jejuni # 1 110 1 113 123 102 59.0 2e-22 MSGILLVVQFVLAIIITIVVLLQKSSSIGLGAYSGSNESLFGAKGPAGFLAKTTFVLGFL FVVNTIALGYFYTKDSQKSIVDNVEIPATQTNPAPAVPTTPAAPIAPAAPAQTK >gi|197283019|gb|ABQU01000031.1| GENE 6 2887 - 4428 1883 513 aa, chain - ## HITS:1 COG:aq_2090 KEGG:ns NR:ns ## COG: aq_2090 COG0119 # Protein_GI_number: 15607049 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Aquifex aeolicus # 2 511 7 516 524 500 52.0 1e-141 MEMIKIFDTTLRDGEQSPGASMNTEEKIKLALQLERLGVDIIEAGFAAASPGDFEAISRI AEAVKDSTICSLARAVPKDIEAAAKALEKAKLKRIHTFIATSPIHMEYKLKMQPSEVIKR AVESVQLAKSLCEDVEFSCEDACRSDIGFLKEIALAVIEAGAQTLNLPDTVGYRLPSEIG DIIREMKECVGNRAILSVHCHNDLGLAVANSIAGIQNGARQLECTINGLGERAGNTALEE VVMILKTRKDIFKDLDTRIKTQEIYAASKLVADITGIRPQPNKAIVGKNAFAHESGIHQD GVLKHPETYEIMKASDIGIPQDNGLVLGKHSGRAAFRDKLSSLGFGEISQDELDSAFEKF KILCDKKKEVYDEDIRSILTEQSTKIPQIFELVRMQISDCSSGVPHAAICIQKDGLERVD AAIGNGSVDAILKTIDRISGYQGILKDYKVEAVSEGKDALAKVVVKVEFESGKSAVIGHG LHLDTMQATAMAYLGALNSYLSMKELIATKKCF >gi|197283019|gb|ABQU01000031.1| GENE 7 4558 - 5292 648 244 aa, chain - ## HITS:1 COG:Cj1114c KEGG:ns NR:ns ## COG: Cj1114c COG1183 # Protein_GI_number: 15792439 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine synthase # Organism: Campylobacter jejuni # 6 238 8 235 242 199 53.0 3e-51 MKIDPLYILPNLFTGASIYLGILSVSYATMGKFHLACWLVLLSLIFDGLDGRVARLTGTT SKFGVEFDSLADVVAFGVAPAMILFCYVGYMYGKLGIIVSGLYVVFGAIRLARFNVTTTQ NEPNVFIGLPIPAAAVFVVSWLLLEMGFLQNYLENSKAISQFLLIGSLIVALLMVSNIRY PSFKKLNFEKISFVRAIVLLMIILAILFAYPVLSIVTLITCYVLFGPIRALYYLLKKKIV EKKK >gi|197283019|gb|ABQU01000031.1| GENE 8 5292 - 5894 383 200 aa, chain - ## HITS:1 COG:Cj1115c KEGG:ns NR:ns ## COG: Cj1115c COG0688 # Protein_GI_number: 15792440 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine decarboxylase # Organism: Campylobacter jejuni # 8 198 5 203 205 69 27.0 3e-12 MGTTTQIIAKEGWKPIIITLVILFFCWLVGWKFIGFLAFLALICFVYFYYNPERIPQDLS ENSILAPIDGKIVNIENQHDGIYLEIKKPICFCGMIRMPFEGEAKEKLRIQGLYNGKEAT GEKIILDFKGVCGDSSLVLYPKICLRNVYLYFFDSKFRMGQRIGFFLNGRAKFKLPANVE IKVSIDDRIYAGSSVIGYVR >gi|197283019|gb|ABQU01000031.1| GENE 9 5905 - 7833 1160 642 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 24 622 8 595 636 451 42 1e-127 MQKQNNNQNPQDKKPNNIFNQNPLLMFVIFAIIAIVIFRFMSPSGEVSKLSGASTTKTIN YYEMKKLIENKEVDFVAIGQTNIKATANNAGGKIVYNAQRVSPDNTLIPLLDEKGVEYTG YSESNWLSDMLFGWVLPIFIFFAIWMFLANRMQKNMGNGILGIGSSKRLVNAEKPNVKFD DMAGNVEAKDEVVEIVDFLKNPERYAALGAKIPKGVLLVGPPGTGKTLLAKAVAGEANVP FFSVSGSSFIEMFVGVGASRVRDLFENAKKNAPSIIFIDEIDAIGKSRAAGGMISGNDER EQTLNQLLAEMDGFSSDSSPVIVLAATNRPEVLDPALLRPGRFDRQVLVDKPDFEGRVEI LKVHIKNIKLSKNVDLFEVAKLTAGLAGADLANIVNEAALLAGRNNKKEVEQSDFLEAVE RGIAGLEKKSRRISPKEKKIVAYHESGHALIAEITKGAKKVTKVSIIPRGLAALGYTLNT PEENKYLMQKHELLAEVDVLLGGRAAEAVFLGEISTGASNDLERATDIIKAMVSYYGMTD VAGLMVLEKQRNVFLNGGLGSTREYSEEMAQKMDEYIKKILNERFEAVKESLETYREAIE NIVKELFEKENIDGEKVREIISEYEKAHNLESRIVQEEKEEA >gi|197283019|gb|ABQU01000031.1| GENE 10 7842 - 8669 1424 275 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239523438|gb|EEQ63304.1| ribosomal protein L11 methyltransferase [Helicobacter pullorum MIT 98-5489] # 1 275 1 275 275 553 100 1e-157 MEYYNCLSIKADKFLWLLQNKALEITNEAIEESDNSFIIRTYQDINAIQEQLQEYANNLE NIMGEKIHLEFEKQVLQNQDWIAKYRDSIQPIECGKYYIHPSWFEAKKDKINLIVDPALA FGSGHHGSTFGCLEALSKIDLEGKRLLDVGCGSGILSLAAKKSGANVWCCDTDEVAIIAT KDNMQKNGVVLDKVFLGTIDKITSEKGSFDVVVANILADIIVALPLDSYLKKEGILILSG ILEKYTNKVLDKFKNLELLTQNNYEEWVTLTFKKI >gi|197283019|gb|ABQU01000031.1| GENE 11 8672 - 9046 505 124 aa, chain - ## HITS:1 COG:jhp0358 KEGG:ns NR:ns ## COG: jhp0358 COG0784 # Protein_GI_number: 15611426 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Helicobacter pylori J99 # 1 124 1 124 124 203 85.0 8e-53 MKMVVVDDSSTMRRIIKNTLARLGYNDILEGENGIEGWERMNANPDVKVLITDWNMPEMN GLDLVKKVRADDRFKDIPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL GVND >gi|197283019|gb|ABQU01000031.1| GENE 12 9154 - 9414 270 86 aa, chain - ## HITS:1 COG:YPO1544 KEGG:ns NR:ns ## COG: YPO1544 COG0106 # Protein_GI_number: 16121817 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase # Organism: Yersinia pestis # 2 81 158 238 245 72 38.0 2e-13 AKEFVNSKIEAIVCTDISNDGMLGGINIDFTKEIAQSSGKFTIASGGLSCMEDLEKLKDS NIEGVIVGKAFYEEKINLKEAFRIFG Prediction of potential genes in microbial genomes Time: Tue May 24 02:16:43 2011 Seq name: gi|197283018|gb|ABQU01000032.1| Helicobacter pullorum MIT 98-5489 cont2.32, whole genome shotgun sequence Length of sequence - 65190 bp Number of predicted genes - 77, with homology - 75 Number of transcription units - 28, operones - 16 average op.length - 4.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 446 560 ## COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase - Prom 513 - 572 10.1 + Prom 489 - 548 10.0 2 2 Tu 1 . + CDS 642 - 3935 3306 ## Spro_3913 outer membrane autotransporter + Term 4180 - 4214 0.2 3 3 Op 1 . - CDS 3947 - 4555 664 ## COG0118 Glutamine amidotransferase 4 3 Op 2 . - CDS 4560 - 5465 923 ## WS0616 hypothetical protein 5 3 Op 3 . - CDS 5487 - 6308 762 ## COG3298 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB - Prom 6330 - 6389 7.8 + Prom 6298 - 6357 8.0 6 4 Tu 1 . + CDS 6381 - 7160 943 ## COG0854 Pyridoxal phosphate biosynthesis protein 7 5 Op 1 19/0.000 - CDS 7595 - 8647 1119 ## COG1566 Multidrug resistance efflux pump 8 5 Op 2 21/0.000 - CDS 8644 - 9573 691 ## COG0477 Permeases of the major facilitator superfamily - Prom 9612 - 9671 3.4 - Term 9778 - 9819 -0.7 9 5 Op 3 1/0.000 - CDS 9820 - 10302 296 ## COG0477 Permeases of the major facilitator superfamily - Prom 10322 - 10381 6.5 10 5 Op 4 . - CDS 10582 - 11742 1328 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 11762 - 11821 8.6 - Term 11835 - 11869 -0.5 11 6 Tu 1 . - CDS 11901 - 12326 313 ## COG0789 Predicted transcriptional regulators - Prom 12562 - 12621 14.3 + Prom 12585 - 12644 11.3 12 7 Op 1 4/0.000 + CDS 12672 - 13634 547 ## COG0701 Predicted permeases 13 7 Op 2 . + CDS 13644 - 13985 258 ## COG0640 Predicted transcriptional regulators - Term 13786 - 13823 3.2 14 8 Tu 1 . - CDS 14059 - 14130 96 ## - Prom 14243 - 14302 9.8 15 9 Op 1 . - CDS 14325 - 14699 401 ## COG4925 Uncharacterized conserved protein 16 9 Op 2 1/0.000 - CDS 14753 - 15922 1145 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Prom 16069 - 16128 8.8 - Term 16084 - 16139 7.1 17 9 Op 3 . - CDS 16319 - 17200 596 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit - Prom 17300 - 17359 8.5 + Prom 17543 - 17602 9.2 18 10 Op 1 . + CDS 17704 - 18954 1225 ## COG1064 Zn-dependent alcohol dehydrogenases 19 10 Op 2 . + CDS 18982 - 19161 241 ## gi|242310160|ref|ZP_04809315.1| predicted protein + Prom 19173 - 19232 7.3 20 11 Op 1 . + CDS 19258 - 19752 562 ## COG3014 Uncharacterized protein conserved in bacteria 21 11 Op 2 . + CDS 19822 - 20646 614 ## COG3014 Uncharacterized protein conserved in bacteria 22 11 Op 3 . + CDS 20648 - 21040 263 ## CJE0085 putative lipoprotein 23 11 Op 4 . + CDS 21018 - 21650 859 ## COG3417 Collagen-binding surface adhesin SpaP (antigen I/II family) 24 11 Op 5 . + CDS 21676 - 23013 1424 ## C8J_0085 putative periplasmic protein 25 11 Op 6 . + CDS 23023 - 24219 1108 ## Cj0093 putative periplasmic protein + Prom 24550 - 24609 5.7 26 12 Op 1 . + CDS 24655 - 24864 152 ## gi|242310166|ref|ZP_04809321.1| predicted protein 27 12 Op 2 . + CDS 24842 - 25690 770 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Prom 26178 - 26237 5.8 28 13 Op 1 . + CDS 26261 - 26476 358 ## gi|242310169|ref|ZP_04809324.1| predicted protein 29 13 Op 2 . + CDS 26498 - 26770 342 ## COG3041 Uncharacterized protein conserved in bacteria + Prom 26874 - 26933 4.0 30 14 Tu 1 . + CDS 26982 - 27947 746 ## HH1063 hypothetical protein - Term 27802 - 27839 -0.9 31 15 Tu 1 . - CDS 27954 - 28712 579 ## COG4121 Uncharacterized conserved protein - Prom 28737 - 28796 8.1 + Prom 28703 - 28762 8.8 32 16 Op 1 3/0.000 + CDS 28800 - 29663 790 ## COG0777 Acetyl-CoA carboxylase beta subunit 33 16 Op 2 1/0.000 + CDS 29668 - 30120 412 ## COG1576 Uncharacterized conserved protein 34 16 Op 3 . + CDS 30132 - 30491 388 ## COG1734 DnaK suppressor protein 35 16 Op 4 . + CDS 30488 - 31510 1174 ## WS0154 hypothetical protein - TRNA 31525 - 31601 81.8 # Arg TCG 0 0 + Prom 31566 - 31625 4.0 36 17 Tu 1 . + CDS 31657 - 32499 640 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Term 32475 - 32524 -0.2 37 18 Op 1 . - CDS 32554 - 33108 705 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 38 18 Op 2 . - CDS 33123 - 33461 350 ## HH1369 hypothetical protein 39 18 Op 3 2/0.000 - CDS 33472 - 33897 494 ## COG0698 Ribose 5-phosphate isomerase RpiB 40 18 Op 4 2/0.000 - CDS 33907 - 34593 708 ## COG1994 Zn-dependent proteases 41 18 Op 5 3/0.000 - CDS 34593 - 35384 805 ## COG0681 Signal peptidase I 42 18 Op 6 . - CDS 35381 - 36241 939 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase - Prom 36262 - 36321 8.5 + Prom 36224 - 36283 6.7 43 19 Op 1 . + CDS 36335 - 36685 253 ## WS1344 hypothetical protein 44 19 Op 2 . + CDS 36685 - 37323 733 ## COG1611 Predicted Rossmann fold nucleotide-binding protein 45 20 Tu 1 . - CDS 37285 - 37452 93 ## - Prom 37639 - 37698 6.3 46 21 Tu 1 . + CDS 37403 - 38569 1115 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase 47 22 Tu 1 . - CDS 38609 - 38893 423 ## COG1145 Ferredoxin - Prom 38919 - 38978 7.1 + Prom 38995 - 39054 8.2 48 23 Op 1 . + CDS 39094 - 40023 770 ## COG0731 Fe-S oxidoreductases 49 23 Op 2 . + CDS 40093 - 40575 219 ## gi|242310189|ref|ZP_04809344.1| predicted protein 50 24 Tu 1 . - CDS 40572 - 41981 478 ## PROTEIN SUPPORTED gi|163803542|ref|ZP_02197411.1| 30S ribosomal protein S20 - Prom 42021 - 42080 5.0 + Prom 41951 - 42010 4.3 51 25 Op 1 . + CDS 42063 - 43853 1321 ## WS0441 hypothetical protein 52 25 Op 2 . + CDS 43864 - 44442 777 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 53 25 Op 3 1/0.000 + CDS 44443 - 45774 684 ## PROTEIN SUPPORTED gi|227372256|ref|ZP_03855738.1| SSU ribosomal protein S12P methylthiotransferase 54 25 Op 4 . + CDS 45777 - 46766 601 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 55 25 Op 5 . + CDS 46842 - 47081 467 ## WS0068 hypothetical protein 56 26 Op 1 . - CDS 47083 - 47553 576 ## COG1225 Peroxiredoxin 57 26 Op 2 . - CDS 47592 - 47918 358 ## WS0005 hypothetical protein 58 26 Op 3 . - CDS 47922 - 48473 422 ## gi|242310199|ref|ZP_04809354.1| predicted protein 59 26 Op 4 13/0.000 - CDS 48483 - 49280 539 ## COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component 60 26 Op 5 23/0.000 - CDS 49291 - 50031 313 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 61 26 Op 6 . - CDS 50032 - 51147 790 ## COG0767 ABC-type transport system involved in resistance to organic solvents, permease component 62 26 Op 7 . - CDS 51149 - 51877 885 ## COG1651 Protein-disulfide isomerase - Prom 51897 - 51956 1.8 63 27 Op 1 24/0.000 - CDS 51962 - 53161 702 ## COG1459 Type II secretory pathway, component PulF 64 27 Op 2 . - CDS 53161 - 54684 1206 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 65 27 Op 3 . - CDS 54681 - 55280 527 ## WS0542 hypothetical protein 66 27 Op 4 . - CDS 55281 - 56747 1190 ## COG1450 Type II secretory pathway, component PulD 67 27 Op 5 . - CDS 56786 - 57040 259 ## gi|242310208|ref|ZP_04809363.1| predicted protein 68 27 Op 6 . - CDS 57037 - 57588 394 ## gi|242310209|ref|ZP_04809364.1| predicted protein 69 27 Op 7 . - CDS 57585 - 58658 596 ## gi|242310210|ref|ZP_04809365.1| predicted protein - Prom 58689 - 58748 10.0 + Prom 58670 - 58729 10.0 70 28 Op 1 . + CDS 58755 - 58991 189 ## gi|242310211|ref|ZP_04809366.1| predicted protein 71 28 Op 2 . + CDS 58988 - 59794 329 ## gi|242310212|ref|ZP_04809367.1| predicted protein 72 28 Op 3 . + CDS 59791 - 60171 277 ## gi|242310213|ref|ZP_04809368.1| predicted protein 73 28 Op 4 10/0.000 + CDS 60213 - 61472 1216 ## COG0814 Amino acid permeases 74 28 Op 5 . + CDS 61475 - 62836 1147 ## COG1760 L-serine deaminase 75 28 Op 6 . + CDS 62845 - 63453 673 ## COG0132 Dethiobiotin synthetase 76 28 Op 7 3/0.000 + CDS 63532 - 64083 866 ## COG2952 Uncharacterized protein conserved in bacteria 77 28 Op 8 . + CDS 64083 - 65190 1164 ## COG0505 Carbamoylphosphate synthase small subunit Predicted protein(s) >gi|197283018|gb|ABQU01000032.1| GENE 1 2 - 446 560 148 aa, chain - ## HITS:1 COG:slr0652 KEGG:ns NR:ns ## COG: slr0652 COG0106 # Protein_GI_number: 16332128 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase # Organism: Synechocystis # 1 148 1 150 256 142 46.0 3e-34 MQIIPAIDLKGGCAVRLTQGKMESAKVYYKNPLEVAKLFWSMGAEYLHIVDLDGAFRGEP KNREVIEKIAKHSKLKIEVGGGIRDEKTIQEYLEIGVNRVILGSIALKNPDFAKEMAQKY PIVIGIDAKEGRVATEGWDKVDGILAKE >gi|197283018|gb|ABQU01000032.1| GENE 2 642 - 3935 3306 1097 aa, chain + ## HITS:1 COG:no KEGG:Spro_3913 NR:ns ## KEGG: Spro_3913 # Name: not_defined # Def: outer membrane autotransporter # Organism: S.proteamaculans # Pathway: not_defined # 26 1064 27 1065 1091 302 28.0 5e-80 MNTSNIIILTLGLTSYVFGYDTIIINHNNKPIFTLDFYAQGESSSFGGESQTSSHNLTQT QRAEVLRAAQFWADILGANATNFNPIPLSVGTIKEKNASAISYDILYANNSSLFADMLYH NLTLENAKENLSQIPIDKDSQGNPIFLSDHDLKYLGHINMGTLNWYIAPHPSTLPTNANQ YDTFSTFTHELFHALGLASTTTREPNDAFATSLNAYTQNLVDSRGVNAQKEMLILDDNAY QSNKNIFLVDSEVNMWEGNMGGSLSNATGHAYFVGNHVNEVIQNAELGFDAFNGLPISGW ENGDADLSHIELDNSLMSHQTWINYLFFMEAELALLQDLGYVFDRKLFYGDSIYENGITW ESRNGFYDRENNAWVEGSYNLSTYGVGLHIYGRENTATQNHNILSQGIAASGIRIDGSNN TLNIHSKIHALGDYSNGVLVSYGKNHTINHKGEIKATGKEGIGIHLNFGDNEAGNSSEYR GSYMFANPDYDLSEWQDFLEAYRLDGALVSNLNLQNGSYTEGSLASIFIANNAFVENINI QNGATIKGDIISLWNPNNPHLLENYQNQYYTTLNFGNQSLLTLNDPISFNGGIYGYESIK LNNYSTLALSDNILVYDLYNNASLTLKNPNALIGIKNHFENSTNATLYAPINAQGKLNLQ IGNSASLAGNLNFYMAKDFYKDKLTLNPHDLLSNENPINITGNFANINYDSSLNASHTLN FKFDNATNTLTITRNYEKFAKNDDSRSLALALKSLALNSSESSYVPQLFQELDFTQDTNL IANSLDNLNAKTYLDSAKISLDFQKSLNEDFINDFNHSSNHEWIVQVSTFGAYQNTKENG DFNAYKGYNGGIHTKLSKNFNDSWDLAFHFIFNSNNFDFENNSNSKSKGGYFGITSKYDF DSVYLLGSLRLGYEYTNLERALNIGAYSQNFSSSFHSLTTSALAGLGKDFTLTPKLSISP LVYGEINSLHMPDITESNEGAALEIKSDNHYFLGSFAGLKLAYNNDITSLYELKLTLLGG YYHLFTDNLKVNAKFKNDSNHTPFYAQNTLDKKDSLQLRGDIGLFYKNGFFTNLALQSNT QKHHTDFFASLEAGIRF >gi|197283018|gb|ABQU01000032.1| GENE 3 3947 - 4555 664 202 aa, chain - ## HITS:1 COG:BS_hisH KEGG:ns NR:ns ## COG: BS_hisH COG0118 # Protein_GI_number: 16080542 # Func_class: E Amino acid transport and metabolism # Function: Glutamine amidotransferase # Organism: Bacillus subtilis # 1 202 1 204 212 172 48.0 3e-43 MLGIVDYNIGNLASVQNAILKVGESAKIESDPSKLKDYDKIILPGVGAFGDAMEHLQKSG MQEAILDFVKSGKFLLGICLGMQLLFQKSYEFGEHSGLGLLEGEIIHFEKAALKKGEKIP HMGWNLVKKVKNSALLEGLEDSFYLYFVHSYYLGESKNAIGMSHYGIDFVSIVQKENIFG IQPHPEKSHNVGLKILKNFVKL >gi|197283018|gb|ABQU01000032.1| GENE 4 4560 - 5465 923 301 aa, chain - ## HITS:1 COG:no KEGG:WS0616 NR:ns ## KEGG: WS0616 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 294 1 294 301 369 65.0 1e-101 MLSKEILQFAEMRYEIRAYLCFLLQRNIKNYLPHIELNKIIDGLHKIGSEVRIFELLYVL DSSGNLAIDGISNDSSIECKKGENHNDRAYFYRAVKEKKCILTDPYPSLASGNLVVTVSY PLYNDKGKLMYVVCMDVPLDKTSLLVRPMPLFGFFSNFKKAIYFVISLALFLVCGLLLVK GGISMWEALERFNSLDIKDIFEATILITLSLAIFDLVRAIFEEEVLGRQKSQDSKMVHKT MIRFLGSIVIALAIEALMLVFKFTIIEPEKLIYAVYLIGGVTLLLVGLSLYVKFTIGIKR D >gi|197283018|gb|ABQU01000032.1| GENE 5 5487 - 6308 762 273 aa, chain - ## HITS:1 COG:jhp0628 KEGG:ns NR:ns ## COG: jhp0628 COG3298 # Protein_GI_number: 15611695 # Func_class: L Replication, recombination and repair # Function: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB # Organism: Helicobacter pylori J99 # 1 271 7 272 276 246 46.0 3e-65 MVMVFDCETIPDVELIKQGFRAEFEKCDFVSSDDLEISKKAMEIQKENSGSEFLPICYHQ VVSIAAVFCDEFGNFKKVGNFKAIGETKEQREESLIKAFLDYLNKHQPKLVSFNGRGFDL PMLLLRAMKYKLQANAYFEVDNLQYNKNKWENYRQRYSERFHTDLLDVLGNFGSVRGLKL DVVANLVGMPGKYDVHGDMVLELYYQGKYEVIDEYCQSDVLNTYGVYLHYELLKGNLSVA EYKGILEIWRENLPKDKAYHRIFFDTITKQIES >gi|197283018|gb|ABQU01000032.1| GENE 6 6381 - 7160 943 259 aa, chain + ## HITS:1 COG:Cj1238 KEGG:ns NR:ns ## COG: Cj1238 COG0854 # Protein_GI_number: 15792562 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal phosphate biosynthesis protein # Organism: Campylobacter jejuni # 1 259 1 256 257 245 53.0 7e-65 MLLGVNIDHIATLREARKINDPDPLEAIFIAKRAGADQITLHLREDRRHMNDDDISRIVE SSFLPINIESSINPQIIDFLLKIAPHRITLVPENRQEVTTEGGLNVEKNLKIIQEITKKF QDNGTEVSLFIDTDICQICAAKETGANMIELHTGAYANLHLMLFTNLPKMHNSIKTLEQS KSHLKEAYENSLIELKNAAKEAKWLGLEVAAGHGLNYANLKPILEIPEIIELNIGQSIVA RAIFTGLEQAIKDMVALLK >gi|197283018|gb|ABQU01000032.1| GENE 7 7595 - 8647 1119 350 aa, chain - ## HITS:1 COG:AGc2013 KEGG:ns NR:ns ## COG: AGc2013 COG1566 # Protein_GI_number: 15888430 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 12 347 34 371 385 248 42.0 1e-65 MKKYSWLPSKPKLFVIISTIVGMAIGVLLILYAWQLPPFFMNVVATNDAYIQSSTTILSP QVSGYITEIYVKDFETIKEGQPLFQIDKRIFTQRVEEARANLTIAQNALKTYAQDYLLHE ANIKEKEAQIKAVEANLQNMQADFKRSKMLIKQQALSKRDYDNAAANLKSTQAQHIQAKA QLQQALQEFESFKANQTTLEAEVKRAESLLELALIDLDNSLIKALIAGKLGEIGAKIGQF VSQDTALVYLVPKDIWVIANVKETKMDKVKIGQKVVFSVDALNDNEFSGVVEEISPATGS EFSAIKVNHATGNFIKIVQRIPVKIKIDSNQARLDDLRAGMSVVVEVHTQ >gi|197283018|gb|ABQU01000032.1| GENE 8 8644 - 9573 691 309 aa, chain - ## HITS:1 COG:BMEII0794 KEGG:ns NR:ns ## COG: BMEII0794 COG0477 # Protein_GI_number: 17989139 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Brucella melitensis # 2 263 33 316 330 124 29.0 2e-28 MWWYHSYIAYGLCIAIVSFGIFFLIEFFKKRPFINLKFLTNIQLIEVALAAAFVRMCLAE QSTGATGLFKNVLGFSDYQLMDYYGILTLGALCGGIACIMIYHYERSHGMILFAAFLIPL GSFLSTKLSIDMLPSNLYLGQFLIAFASVFFIGPLMVNGIILGYARRINHLVTFAAIFTF SQGVFGLLGSAIIGFFIQTQTMQHMQNLLNHSFQANNLIQRFKGDFYEELNKQAGILAYG DLFFYIGVIGTCIFLVLASRYVYFKLLSSNSIQRELNILKTKSINSNLKTAQFLEKLNNK EIKSIRRIQ >gi|197283018|gb|ABQU01000032.1| GENE 9 9820 - 10302 296 160 aa, chain - ## HITS:1 COG:AGpA277 KEGG:ns NR:ns ## COG: AGpA277 COG0477 # Protein_GI_number: 16119423 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 9 151 19 161 477 60 26.0 1e-09 MPLKFEKHFTPNEMPAIWGSPAKPDFPNKIRLIYGIGFVVALVTASLQNNLIIAYIPYLQ GDYGFTPTQGACVTAAYYMGNVWTTIMLFRLRQHFGLKIFFICIFVGLLLSQFLELMYSN FSVVIFARFIGGVVGGGINVLTIFMHLKCCPPNKDIYSFP >gi|197283018|gb|ABQU01000032.1| GENE 10 10582 - 11742 1328 386 aa, chain - ## HITS:1 COG:YPO2002 KEGG:ns NR:ns ## COG: YPO2002 COG1073 # Protein_GI_number: 16122244 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Yersinia pestis # 64 382 42 359 363 353 61.0 3e-97 MKKQNRRKFLGDSMKLASTALVLGSIPSAFAKNQNQESLHATHKPKITNVANKSQEATRN VARNPFGLVYENAISKNEKGKVNLKQVSYDTRGLKAVANVYLPPNFTSSGKYPAIVVAHP NGGVKEQVAGLYAQNLAQIGYVTLAFDALYQGASEGSPRNVDTPTNRIEDIYAAIDFIST FKGVDNNRLGILGICGGGGYTLKAAQTDKRLKAIATLSMFNSGLVRRNGFLDSQISSIQA RLEEASRARAKQALGEILYTGAAPVKLGEAELAKIDTDLYREGAIYYGDTHAHPNSSFAY TTASLLELMSFDALNQIELINKPLLLMVGDKADTAYMSEQAYNRASGADTKELFRLQDST HIQTYFKPSVVAQVLGKLEEFYKQYV >gi|197283018|gb|ABQU01000032.1| GENE 11 11901 - 12326 313 141 aa, chain - ## HITS:1 COG:Cj1563c KEGG:ns NR:ns ## COG: Cj1563c COG0789 # Protein_GI_number: 15792868 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Campylobacter jejuni # 1 141 1 141 143 123 46.0 1e-28 MAYTIIEVERKTGVASRTLRFWADKGLFTFVQKDSNGVRYFSEKDVQWVFWIDCYRQIGM SIEDIKYYITLCAKGENTAQERLEIIQRQRQKTLDDIEKLQVVLEKLDYKVAYYKEMIAK QKDDINPLNKEYVKCKKRVRF >gi|197283018|gb|ABQU01000032.1| GENE 12 12672 - 13634 547 320 aa, chain + ## HITS:1 COG:Cj1560 KEGG:ns NR:ns ## COG: Cj1560 COG0701 # Protein_GI_number: 15792865 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Campylobacter jejuni # 42 316 1 271 274 209 47.0 6e-54 MQTKAIEILLTFMLYFVELSLLFIAMTMAVKYLNTRFNNIVKRFLTNNIFGYFKAILLGA LTPFCSCSTIPLFKALLESDVRPSICVAYLLTSPLLNPVIIAMFILSFGLDIAVYYGIFV VFSVFICSFLLSFVNSSLLIKTEPKKYSTAFKPTQISNSHLQNAIFTTKANNTCCVKTFN NTKATLSLKELFQEALREYKKIFVYLCIAMMIGVFLHGFVPQGFLEQTLSKFGAFSIVFA ALIAILLYVRIEAFIPIGLGLMEAGVPLGAVMSFLIAGGGCSLPELILLKSIVKNIFLIL FVAIVLAIAIGFGLILYYGI >gi|197283018|gb|ABQU01000032.1| GENE 13 13644 - 13985 258 113 aa, chain + ## HITS:1 COG:Cj1561 KEGG:ns NR:ns ## COG: Cj1561 COG0640 # Protein_GI_number: 15792866 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Campylobacter jejuni # 4 64 1 57 59 69 65.0 1e-12 MEELEKFLHIMGAVYDESRIRILAFLLHYKKEHTMLCVCDLQHSLDMSQSRLSRHLKILK DAGFLKVKRQGVWAYYGIKDRVSSPCLVLLEEIKRLNLEIPPLNFHKNTLTKE >gi|197283018|gb|ABQU01000032.1| GENE 14 14059 - 14130 96 23 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAYTIIEVERKTGVVYKIVRFCY >gi|197283018|gb|ABQU01000032.1| GENE 15 14325 - 14699 401 124 aa, chain - ## HITS:1 COG:RSc0630 KEGG:ns NR:ns ## COG: RSc0630 COG4925 # Protein_GI_number: 17545349 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 5 124 1 115 118 83 38.0 1e-16 MAQTMQIQLEFEGKYVKVELEDNAASREFVAQLPLSLEFSDYVGKEKIAHLPKPLSVKNT AGYDPQIGDLFYFAPWGNIGIFYAKQPPYNGLVYLGKVLETSSGKNGIEILKTKKDDFKV LIKR >gi|197283018|gb|ABQU01000032.1| GENE 16 14753 - 15922 1145 389 aa, chain - ## HITS:1 COG:TM1006 KEGG:ns NR:ns ## COG: TM1006 COG0667 # Protein_GI_number: 15643766 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Thermotoga maritima # 52 378 3 324 333 302 49.0 1e-81 MQNNEFQNRRDFLKLGAKVASSVALAGLGANMLLADSIKSQTKGENMNTTQLPFRILGKD SATLRVSALGLGCMGMSANHGVPPEEKAMIKLLHEAYELGVRYFDTAEIYGPHTNEILLG KAFGDRRDKVVIGTKFGLYYPFNKQQQDSSKKSIFRAVDASLRRLKSEYIDLYTQHRVDT DTPIEEVADTMSELIKMGKIRHYGLSEAGAKTIAKAHRICPITSIQSHYSMMMREVEGNG VLQTCEELGIGFTAYSPLERGFLGGLMNENTRFHPTLDMRASFPRFTPEALKANQAFIKL VKEIAKSKVVDGKEATTAQIALAWLLAQKPFIMPIPETTKLAHLKQNLGALKISFSKQEL QEIDLKIQEIKIVGERYPIGSDQAKSVGL >gi|197283018|gb|ABQU01000032.1| GENE 17 16319 - 17200 596 293 aa, chain - ## HITS:1 COG:MA0409 KEGG:ns NR:ns ## COG: MA0409 COG0599 # Protein_GI_number: 20089302 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Methanosarcina acetivorans str.C2A # 49 291 3 247 250 246 49.0 3e-65 MAKNRREFLGNSLKLAGASLAFVAFDDLYALEATTNTISPIKETTMNDLTPTAKANLERL FGTSKLPQEDLEFFTNYANFAFDEVWEKSPLQEHERLLIILASLVAIPAKEEFGTMLNAA LNLGINPIAIKEVVYQATPYVGMGKIAEIVSLTNTIFKQRGIKLPLESQGTTNRQNRKQK GLETQRVLFGEGIDKSNAAAPSDQRHIRDFLSANCFGDYYTRTGLELQFRELITFVYIAS MGGAEPQLRAHIVGNLRNGNDRAKLTAVITALVPYIGYPRSLNALSAIDEIAK >gi|197283018|gb|ABQU01000032.1| GENE 18 17704 - 18954 1225 416 aa, chain + ## HITS:1 COG:Cj1548c KEGG:ns NR:ns ## COG: Cj1548c COG1064 # Protein_GI_number: 15792856 # Func_class: R General function prediction only # Function: Zn-dependent alcohol dehydrogenases # Organism: Campylobacter jejuni # 65 412 10 355 358 420 59.0 1e-117 MQDSHKRRAFLKTGAKVAGGVALASMGISTLFADSNNTHRVNAGQDTQGVTLLGDSKIPF KNGERIPARGYAAFGKEWKFKPYTFTRHPLGENDVLIEIMYAGICHSDLHAVSGDHGSPI YPMVPGHEIMGKVVAVGSKVRKFKVGDYAGVGCMVNSCGECEACRASREQYCTNAKTVFT YNSKDVFHNDENTYGGYSNNIVLSEKFAIKVPKNAQIEKVAPLLCAGITTYSPIMFSKVA KGQKVAVAGVGGLGHMALQYMVALGAEVTCFDIIDKEEACKALGAKEFVNVKSTRFSEFA NTFDFIISTIPYEYDINAYRAMLKFGGEMAIVGLPSHADSPKLDSQSLIWQFQNKKLYSS LIGGIKETQEMLDFSVKHSIYPKVELIKITELDSAYQRVAQGKADFRFVIDMKSLV >gi|197283018|gb|ABQU01000032.1| GENE 19 18982 - 19161 241 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310160|ref|ZP_04809315.1| ## NR: gi|242310160|ref|ZP_04809315.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 59 1 59 59 112 100.0 7e-24 MSIFEKDKSGALVDMNDPEFSKIFEVITRTQALCFELNSKWHSQERIRISWAKILCLIF >gi|197283018|gb|ABQU01000032.1| GENE 20 19258 - 19752 562 164 aa, chain + ## HITS:1 COG:Cj0089 KEGG:ns NR:ns ## COG: Cj0089 COG3014 # Protein_GI_number: 15791477 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 23 164 15 154 453 157 55.0 6e-39 MIKKLGGTKQYLIASTLTITTAIILSGCLPAIHGPNNSAFDNALTQQVCSDDFFKDYQNK LDKNDDVIYNGLNAGLIAKNCSKYKLSNTFLDKAEESYKYDIDLKGMPKKAADAVASTLL NESFLDYQGSLYERIMVNAYKGLNFMALGDFQDARVEFNRALMR >gi|197283018|gb|ABQU01000032.1| GENE 21 19822 - 20646 614 274 aa, chain + ## HITS:1 COG:Cj0089 KEGG:ns NR:ns ## COG: Cj0089 COG3014 # Protein_GI_number: 15791477 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 2 274 180 453 453 249 48.0 4e-66 MENAKEAIKEGLQDATQQVSGFLKEFQTTKNFVNPYATYLASVFFFMDRDYRRAADLFRE VTSTYPKSKELQREKVVFDKYANSVRGDNKKYIFLSHEDGMGVIKEQFAITVPFPISDSI ATASLAFPKLVKRDAAYPSVKINGRQTSLVSNFDDIIATEYKIEMPAMITKALIQTAIKT GVNATVANNDSTGGILSLATSLFNTATTRADVRIWRGLPKTASVAMVENKGKIKVISPDG KVLVERKVNPKKNVLVIVRTFKDNLPSSVMVVEK >gi|197283018|gb|ABQU01000032.1| GENE 22 20648 - 21040 263 130 aa, chain + ## HITS:1 COG:no KEGG:CJE0085 NR:ns ## KEGG: CJE0085 # Name: not_defined # Def: putative lipoprotein # Organism: C.jejuni_RM1221 # Pathway: not_defined # 2 122 3 121 122 75 35.0 6e-13 MKKVAFLALFLAFFGGCTNPSPTPLESQQHLYFNAMPSDIVQSFKKRFNANGLLECEITF KSSADMEVYYRIIWLDSQGFELKDSLNKEWRRIFINANREFVLTKLAPNKDAKDFKIYFE RKINEYKKYY >gi|197283018|gb|ABQU01000032.1| GENE 23 21018 - 21650 859 210 aa, chain + ## HITS:1 COG:Cj0091 KEGG:ns NR:ns ## COG: Cj0091 COG3417 # Protein_GI_number: 15791479 # Func_class: R General function prediction only # Function: Collagen-binding surface adhesin SpaP (antigen I/II family) # Organism: Campylobacter jejuni # 8 210 5 207 207 327 86.0 8e-90 MNTKNTIKTLALGSLCALLIGGCTQPNYTDGTAAQIKKGDALTLGLDREDFENAAEVMIN SMLSDPAFASIKPGNRKVVAIGRVINDTPQRIDTEKLTAKITTALRKSGKFILTSAVAAG GALDSMSEDVRELRGNDEFNQKTIAKKGTLVSPDFSLAGKIRQDNVKLSNGKTQVEYFFL LRLTDLNSGLVYWEDEQTINKVGSSKSVTW >gi|197283018|gb|ABQU01000032.1| GENE 24 21676 - 23013 1424 445 aa, chain + ## HITS:1 COG:no KEGG:C8J_0085 NR:ns ## KEGG: C8J_0085 # Name: not_defined # Def: putative periplasmic protein # Organism: C.jejuni_81116 # Pathway: not_defined # 1 445 1 445 445 424 54.0 1e-117 MKKIIFASALLCGLLYAQGTPAVEITQEDIVIQNKISDANQKIESKSVEDFFEEFADNYG IEYGQTENGKTFYSGYGDVTKKEGSQDFSRALSIGYQRAIANIQAEFIKDAFGRIANEKI ITYLQDSSSNAREFEELPKGGAISQIFDKVKQLAGAKLDKALSDLGVNVEGLTEERKKEI FRDEFISESLTQAYGNMSGLVSVQTIVTQTSNGNYRIGVIAVMSDKTRAIAQDMARNRMP SIKGKGGKPIKEYLPKEDKDYLNEYGIRLVYDENGAPVILSYGTWGFSKDSSTDSRILDR LESRAKETASTNADTAIMEFVNTEITYSNKQTIGDLIQTTLKETRTADNVSLSEQSLDEI IDKSSSQIKIKSSGKLRGIRTLKRWTYEDENGVVFVGAVRAYSYANYLNATQAITPKDLS TTSTSQKSTTKVQRSSNMVNDLDDF >gi|197283018|gb|ABQU01000032.1| GENE 25 23023 - 24219 1108 398 aa, chain + ## HITS:1 COG:no KEGG:Cj0093 NR:ns ## KEGG: Cj0093 # Name: not_defined # Def: putative periplasmic protein # Organism: C.jejuni # Pathway: not_defined # 20 398 18 400 400 423 62.0 1e-117 MKKIFAIWVLLLGILAGILNAQVITETTTKTSRGEGEGLSRQEAINNAIIEALGKLNGIR IESIKQNFVTSELSNEKSELRDIYSAALSKVTKGRVDSYEINHISQDTNGKYTADVTIYK TTTKKSYKAPGISHKSRRSISVFDTSSSAYSGVGSILQQHLITNLLESRKFNVLDRDSKG YYDLEKALIKSPDAQSDEIYKLGNVLGSDYFLLFGIQGIAGQTKKSNLTNKEIHQVEIVV DYRVILFATRQIKYSNTLTMSLNLKDDNLSTNQEALKQVAQKISDDILNAIYPLKVANIT NNEAVFSQTLKVGDVYECFALGEAIKDSYTKETTGRIETKVGEVTITRTNPKMSYGNITQ GSVQKGNLCRPLGSSNGGGEGRDANYSINPSGGVNLGF >gi|197283018|gb|ABQU01000032.1| GENE 26 24655 - 24864 152 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310166|ref|ZP_04809321.1| ## NR: gi|242310166|ref|ZP_04809321.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 69 1 69 69 114 100.0 2e-24 MHDKTNPLQSCDSPQRASRRDFLKESSKMLGAGLAFSTLGAINPIFAATQAKKTKSKPKR RQYANNHFT >gi|197283018|gb|ABQU01000032.1| GENE 27 24842 - 25690 770 282 aa, chain + ## HITS:1 COG:TM1009 KEGG:ns NR:ns ## COG: TM1009 COG0656 # Protein_GI_number: 15643767 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Thermotoga maritima # 4 279 6 285 286 349 57.0 4e-96 MQTITLHNGVKMPILGYGVYQIDKKECQRCVEDALSVGYRSIDTAASYFNEEAVGAAIRA SGIKREELFITTKLWITSASESKAKRAFETSLKKLGLEYLDLYLIHQPFNDVYGAWRAMS ALYQDKLIRAIGVSNFYPDRLVDFCLNNEIKPAINQVECSPMHAQFEAQKIMQEYNVAME SWAPFGEGRNNMFSNPIIAAIGKKYNKSVAQVILRWLIQRNIIVIPKTTRKERMIENFSV FDFELDSADMQTMASLDDAKSLFFDHRDPKMVKWLSEYKADI >gi|197283018|gb|ABQU01000032.1| GENE 28 26261 - 26476 358 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310169|ref|ZP_04809324.1| ## NR: gi|242310169|ref|ZP_04809324.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 71 1 71 71 105 100.0 1e-21 MTITLRNVDFETLQVIESLKGLKKDLEIEKIPNDETLEAMKECEEILENIRKGKRVPYNS YQEAKEALLKD >gi|197283018|gb|ABQU01000032.1| GENE 29 26498 - 26770 342 90 aa, chain + ## HITS:1 COG:VCA0323 KEGG:ns NR:ns ## COG: VCA0323 COG3041 # Protein_GI_number: 15601088 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 1 89 10 98 98 81 47.0 4e-16 MYKIDFSKRFKKEYKRAIRQGKQDKIDSLIEKLANDEALEPKHKDHALKGEYTGYRECHI EPDLLLIYKKQEDILVLVCFRLGSHSELFS >gi|197283018|gb|ABQU01000032.1| GENE 30 26982 - 27947 746 321 aa, chain + ## HITS:1 COG:no KEGG:HH1063 NR:ns ## KEGG: HH1063 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 9 319 16 289 293 211 41.0 4e-53 MADLVIDSILAFASLHKDIQLVTLEGSRANINAKKDRFQDYDISFFMEDISSLRQDTSWL GHFGKVLMMQMPESMELFPPDLKEGWESYLVLYENGVKIDFTLIPLSDVEYYFTHEKLTQ VLLDKNDVASKTMGREIVPSDEDFWPKPLTQRSFDDCLNEFYHLKGYALRAYLRDEAMSM NAYIDSMREALLVLLCWERALEALRGGDSKRALLAPTKPSKDKDLDCDERTQELKIHTKR FQYNFSFGKHCKYLPDFLSKGTYKTLLKTYKLGDITQSYKALKALQRLCDKTTSKIAKHT GFVIPSYKKAIHTYYKALKKL >gi|197283018|gb|ABQU01000032.1| GENE 31 27954 - 28712 579 252 aa, chain - ## HITS:1 COG:alr3919 KEGG:ns NR:ns ## COG: alr3919 COG4121 # Protein_GI_number: 17231411 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Nostoc sp. PCC 7120 # 5 197 12 208 303 90 30.0 2e-18 MNIQTSDKSFTLFSQVFQEHYHSTQDGALQETLHKHILPSFYFHKNKRNLKILDICFGLG YNTLCAINCAYQNGIKALEIHSPEMDRNLIQTLLQYSYPKELDTEILSELTQRHFYQKGD FKVFLHLGDAREILRGFQKKQMVFDIVFQDAFSPNKNKLLWTYEYFKTLFLLTSKDCIIT TYSQNSSMLYSAFLAGFKSYTLKQANTRDSIVLTKTQEIPCLESSNILEVLKVDISHKIA TNKNLVGLYDED >gi|197283018|gb|ABQU01000032.1| GENE 32 28800 - 29663 790 287 aa, chain + ## HITS:1 COG:jhp0884 KEGG:ns NR:ns ## COG: jhp0884 COG0777 # Protein_GI_number: 15611951 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Helicobacter pylori J99 # 1 277 1 278 289 414 71.0 1e-115 MGFVDFFKTFKKDNQERATPKEAPSHWIKCPSCNALMYYKEVIAQYHTCPKCNFHMRIGL KDRISLICDEGSFVEFDKELAPTDPLNFVDKKSYKKRIEEYEKKCGRPSSIVSGECTING ISAQIVLFDFNFMGGSLASVEGEKITRAIHRAITNKQGLIIVSASGGARMQESTYSLMQM AKTSAALNALSNAKLPFISILSDPTMGGVSASFAFLGDIIMAEPGAMIGFAGARVIKQTI GADLPQGFQTAEFLLEHGLIDMIVQRKEMKEKIAQILEYFKAESING >gi|197283018|gb|ABQU01000032.1| GENE 33 29668 - 30120 412 150 aa, chain + ## HITS:1 COG:jhp0883 KEGG:ns NR:ns ## COG: jhp0883 COG1576 # Protein_GI_number: 15611950 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Helicobacter pylori J99 # 1 150 4 150 150 117 46.0 8e-27 MVYYIAKNKDMSDTLCEEFKALSLGFGVKLDFINLFSKSIKEGQKQDSQEAQKSYTKEFL KVFKNQQCKIALSPNGKSVDSFAFSKLLENKGEIAFFIGGAYGLEESFIQKCHYSLSLSN LTFSHKVAKVVVSEQIYRAFCLINNHPYHK >gi|197283018|gb|ABQU01000032.1| GENE 34 30132 - 30491 388 119 aa, chain + ## HITS:1 COG:Cj0125c KEGG:ns NR:ns ## COG: Cj0125c COG1734 # Protein_GI_number: 15791513 # Func_class: T Signal transduction mechanisms # Function: DnaK suppressor protein # Organism: Campylobacter jejuni # 1 116 1 117 120 83 44.0 9e-17 MQQTEIEALKKILETKKKAILDNNFDHQKSMENLRGISLDEADEAAMSMKNTLDGLIFEH HHKELEYIERALEKIENGEYGICEMCDEPISIQRLKAKPHARFCIICREIVEKDLKGRK >gi|197283018|gb|ABQU01000032.1| GENE 35 30488 - 31510 1174 340 aa, chain + ## HITS:1 COG:no KEGG:WS0154 NR:ns ## KEGG: WS0154 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 337 1 335 336 200 37.0 5e-50 MKFKYYLGALFVFIVLLGLYVYSLSGFSYTYHIPFTLQTITLPIAIWFIIPVIMFFVIVI FLEVGGAYRMWYKRTKYKNDYKLLLTQIENQLLCKEVPYKEPSMNRYKKLSILLSNLTFD IKEGTPIKSGEVRLDEMIETLGNLKRGEYVNLKKFNPGEKCPFLKLNILNEIHNDKKFAA EVLKKQNYDEEYKQEAFKKLLEAGDLKDIKRFVGEIKFNKDLANKVLGMCYAQKMDFSDE EVAKLCAEVGYNKEDYLALAQKTKECYEPSSWVRLFEFLANKDENAELAYFYVLLELEMI DEAKERLNSHPQNELLKIRAYLDLKNLGKNYPLELFLQDK >gi|197283018|gb|ABQU01000032.1| GENE 36 31657 - 32499 640 280 aa, chain + ## HITS:1 COG:slr2043 KEGG:ns NR:ns ## COG: slr2043 COG0803 # Protein_GI_number: 16329702 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Synechocystis # 21 268 51 323 338 160 34.0 2e-39 MKKLLILFLLALQSLVAKPILAVSIPMQEEFIQKIAGMEYEIISLVEKGVNPHDFEPKFS SIKKVNEAIAYFSIGIEFEDSWLKRFKQQNPQMQIFPSNAGIDFINFAQNTHHHENHSHD NGDKHIWLSTSNAKQIATNLYKALSTLNPQKDYSKAYEALMIEINNTDKIIKENLKNLPK GQKFVVFHPMLGYFAKDYNLEEISIEVEGKSPKMKEMMKVINTIKKENLKIIFAQPEFST KAAEFIAQESGAKLGYFSPLQTPWAENLIDFSKTLKAMQE >gi|197283018|gb|ABQU01000032.1| GENE 37 32554 - 33108 705 184 aa, chain - ## HITS:1 COG:Cj0927 KEGG:ns NR:ns ## COG: Cj0927 COG0503 # Protein_GI_number: 15792256 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Campylobacter jejuni # 1 184 2 182 182 227 61.0 1e-59 MELTQQEKNMLLDSIREIKDFPQPGIVFRDITTLLNNKEAYSFLMDSLSRRYRDYHLDYV AGIESRGFIFGAALAYSLGIGFVPIRKKGKLPYTTISEKYSLEYGFSEIEIHIDAFKNHS LEHAPKVLLIDDLIATGGTAYAAANLIKKAGAECVESCFIINLQELKGAEELKKITPVYS VLEI >gi|197283018|gb|ABQU01000032.1| GENE 38 33123 - 33461 350 112 aa, chain - ## HITS:1 COG:no KEGG:HH1369 NR:ns ## KEGG: HH1369 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 5 112 10 117 117 150 82.0 2e-35 MAQFAQWLFLTAFILFVLFMIVKTFFYKSVAQKEEKNSAVMKLTLQEAEILIRKHQLQLQ RALGNIDILTDEITALRNEVKTLKQRNSQYRVETEKYKSKIKDLEQKIEALL >gi|197283018|gb|ABQU01000032.1| GENE 39 33472 - 33897 494 141 aa, chain - ## HITS:1 COG:jhp0521 KEGG:ns NR:ns ## COG: jhp0521 COG0698 # Protein_GI_number: 15611588 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Helicobacter pylori J99 # 2 140 9 145 151 150 52.0 7e-37 MKIFVASDHAGFELKESVAEILKSMGHQVVNLGPYDNNRVDYPDFANLLCGEVLKEEGSL GVLVCGSGIGMSIAANRHKGIRAALCNEPYGAMMARAHNDANVLCLGARVIGIGMAEIIL QSFISGKFEGGRHAIRVEKLQ >gi|197283018|gb|ABQU01000032.1| GENE 40 33907 - 34593 708 228 aa, chain - ## HITS:1 COG:jhp0522 KEGG:ns NR:ns ## COG: jhp0522 COG1994 # Protein_GI_number: 15611589 # Func_class: R General function prediction only # Function: Zn-dependent proteases # Organism: Helicobacter pylori J99 # 12 228 16 232 232 155 46.0 4e-38 MSELSLAYKIPLMVVALLIAIIGHEIMHGYVAYRYGDSTAKDSGRLSLNPIVHIDLIGSI LVPATLFLANAPFLFGWAKPVPVRMDRVIYNGGYFAAFLVSLAGIGYNLVLAILASLLLY GLNGGILSGVFGYFENPQFLFILVIFFFLQLIIYNVILAIFNLLPIPPLDGSNALAYLGL MFKNDFFARAFNKIHPVVGMVVLILILSTPLSIILSAPVDFVLQWLLS >gi|197283018|gb|ABQU01000032.1| GENE 41 34593 - 35384 805 263 aa, chain - ## HITS:1 COG:jhp0523 KEGG:ns NR:ns ## COG: jhp0523 COG0681 # Protein_GI_number: 15611590 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Helicobacter pylori J99 # 1 262 1 286 290 289 54.0 4e-78 MKILSKIYNFINSWVGTIIIVLAIIFFIAQAFVIPSGSMLNTMLIGDNLFVKKYAYGIPT PTIPWIEFKVLPDFNNNGHLIEGERPKRGDIVVFRYPLEPKIHFVKRNVAIGGDEVLYTK EGLWVHFKEENPYSQNPTKTLQFGGKTFIYDPYATKHPGVHYQKSDIDSFVLLQNTPNIA MKPVYLENGELAFYAKIAEDEFFMMGDNRNNSSDSRFWGSVHYRYVIGKPWFVYFSWDDD FNIRWERMGKSIESLEDKMREKL >gi|197283018|gb|ABQU01000032.1| GENE 42 35381 - 36241 939 286 aa, chain - ## HITS:1 COG:aq_1898 KEGG:ns NR:ns ## COG: aq_1898 COG0190 # Protein_GI_number: 15606923 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Aquifex aeolicus # 3 277 4 279 291 312 58.0 6e-85 MQILDGKSLALEIQEQIKQEVQMLNQRKITPGLAVILVGNDPASQSYVNMKAKACSQTGI YSTTHEMPESITQDALLQTILMLNQNPNIDGILVQLPLPKHIDATSVLEAISPKKDVDGF HPFNMGRIFCNLEGFIPATPMGVITLLKHYQIPIKGKNVVIVGASNIVGKPLGALFLNEN ATITLCHIYTQNLMEHTKKADILCVGVGKPNLITKDMVKEGAVVVDIGITRLDNGRIVGD VDYENVAPLCSYITPVPGGVGPMTIASLLQNTIKAAKLRAEIQGKE >gi|197283018|gb|ABQU01000032.1| GENE 43 36335 - 36685 253 116 aa, chain + ## HITS:1 COG:no KEGG:WS1344 NR:ns ## KEGG: WS1344 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 12 106 13 107 123 120 62.0 1e-26 MHRVILICIIFINLYGEDSFITPIEYGQMLYENPRGIGCVNCHGERGEGKLIADYSHKQK EKRLKGPQINNLSFKKFLQALQEPTKVMPKYYLTQSEIQAIYKYLESKNTKNHKEP >gi|197283018|gb|ABQU01000032.1| GENE 44 36685 - 37323 733 212 aa, chain + ## HITS:1 COG:RSc2231 KEGG:ns NR:ns ## COG: RSc2231 COG1611 # Protein_GI_number: 17546950 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Ralstonia solanacearum # 10 198 109 292 317 182 42.0 5e-46 MKKILKDYEEITESFKILNQYQNVVTIFGGARIPKENKNYKKIQKLAYELAKEGYSIMTG GGPGIMEAANFGAFKAKSKNPNIVSIGLNIQLPHEQEMNPYVEIPLKFQNFFSRKLVFNH NSTAFIVAIGGFGTLDELSEVLVQIATGKHKKIPIILYGKEYWRGFIKWLKKQMLKENLI TKQELALLSLADSPKEVLKILKNGIPNPIHHK >gi|197283018|gb|ABQU01000032.1| GENE 45 37285 - 37452 93 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNCWKFLGLLLYAKSFIYFLCCEGFDMARFAPIILALFAAFMVLFMMYGVGNPIF >gi|197283018|gb|ABQU01000032.1| GENE 46 37403 - 38569 1115 388 aa, chain + ## HITS:1 COG:HP1026 KEGG:ns NR:ns ## COG: HP1026 COG2256 # Protein_GI_number: 15645640 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Helicobacter pylori 26695 # 10 385 9 390 391 442 58.0 1e-124 MKDLAYNKRPKNFQQFIGQKHIFGENAPFMQLLKSGKIPHSFFFGPPGSGKTTAATLIAN ELGYPFYNLNATSFKSEDLRNILKNHQNTLQKPLIFIDEVHRLNKAQQELLLPIMENHQA LILGASTENPFFALTNAIRSRSFVFEFHLLKQEELKEILKEYDLKDEIREFLISTSGGDA RAMLNLLDCALSSNKPLSIELLKNFRTHSLNSGTNDSNTHYNLISAMIKSIRGSDENAAI YYLARLIEGGENPEFIARRLVILASEDIGNANPNALNLATSTMQSVAKIGYPEARIILSQ CVIYLSASPKSNTSYEAINAALDYIKAHPNEPIPKHIQQFHKDYLYPHDFGGWVEQSYLP KKLEFVKWFPKGFEKTLKEWLDKIKKKI >gi|197283018|gb|ABQU01000032.1| GENE 47 38609 - 38893 423 94 aa, chain - ## HITS:1 COG:Cj0333c KEGG:ns NR:ns ## COG: Cj0333c COG1145 # Protein_GI_number: 15791701 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Campylobacter jejuni # 1 92 1 92 94 118 72.0 3e-27 MSVKITDICIACGACIDECPVEAIVDDDDNPNNDGCYFVYNNKCVECVGHNDEPACASAC PTDGCIVWDEVVGSQPHREDIGEDKRSAHTPVVE >gi|197283018|gb|ABQU01000032.1| GENE 48 39094 - 40023 770 309 aa, chain + ## HITS:1 COG:HP0117 KEGG:ns NR:ns ## COG: HP0117 COG0731 # Protein_GI_number: 15644747 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductases # Organism: Helicobacter pylori 26695 # 3 303 8 306 308 231 40.0 2e-60 MDIIFGPVQSRRFGESLGIDLSPKTKQCNYDCLYCELKGKKAQDSMQEILEIEEILEAIK KGLKQFKNIQSLTITANGEPTLYPYLYELMLRLEDIKGGVQTLLLTNGSLLWDLSVSRAC LLFDKVKFSLDAISPEVFKKIDRPTKNISLEQILQGIYQFSADFSGELYAEILFVKNIND NLDEIKKMARFLAPMRLKRLDISSIDRPPAYKVSPIPQEQLEIFARIFRDFKIPTFLPTR TPNTKKENLNLSQDEILKTLALRPMSKEDIESLWNEESINRLEILHQQGKIKLSKNNEVE FYCLEKHQN >gi|197283018|gb|ABQU01000032.1| GENE 49 40093 - 40575 219 160 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310189|ref|ZP_04809344.1| ## NR: gi|242310189|ref|ZP_04809344.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 160 1 160 160 243 100.0 2e-63 MKEQIKEIKSNFWIMVILGIIGTFISKVGGNEAALAGLLFYIPSIFFSYKIYKTFSTTSN NTLIIKYWWYGFWVQVAIIIPILLAASGTTKAAGFIGAALLFAIYFINIALYNEVSKVTK NKLFFIGSTLLIAFGLGFLLIFIAFIKFDKIYTIEELENS >gi|197283018|gb|ABQU01000032.1| GENE 50 40572 - 41981 478 469 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803542|ref|ZP_02197411.1| 30S ribosomal protein S20 [Vibrio campbellii AND4] # 3 420 6 428 520 188 28 6e-47 MFLKAFLTNSSGILTSRILGFIRDLLTATTLGAGVYSDIFFVAFKLPNLFRRIFGEGAFN QSFLPSFFQARFKGGFALKILLIFCGILVILSLLVWIFQIEVTKILAYGFSDENIALAAP LVAINFWYLLLVFIVTFFGAMLQYRRNFTAWAYSPALLNLAMIVALLLAQNSDAYESVLL LSYGVLAGGVAQILLHFYPMWRLGFFKLLCVGFKEIRAKKDSVNASVKSFGRQFFPAMIG SSSAQLASFIDTLLASFLASGAISYLYYANRIFQLPLAIFAIATSTALFPLVAKYLKEKQ EQKALRELVRSFWLLCVLLGACVIGGILLQKEIIWLLFERGQFGREDTLQTAAVFSAYMI GLLPFGLSRIFSLWLYSQNKQALAAKITAFSLGVGTIFSLVLMQFLGAVGLALAGSISGF FVFFLTLHYFGWKRFLQILNQPRWIFYAFVFLALESALIWLFKQYVFAL >gi|197283018|gb|ABQU01000032.1| GENE 51 42063 - 43853 1321 596 aa, chain + ## HITS:1 COG:no KEGG:WS0441 NR:ns ## KEGG: WS0441 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 578 1 583 607 249 30.0 3e-64 MVKKDSQTSFRPYYVNECEDIKFTIKQIASQFNKDPDTLDFILQAITTYKKNLHDYAPEP LKENEVNEFLENLNNLLEPSLTITQYYSILIVEKEKNENKFHFISNKSFSEAYLILRAGF VFNQEEFENLYLQIRKIKAWNKILFINEKAEKLALKEFLQSLKYPLKQEVRYLLCQSFNF IPPAESYLEFKKEITGQFQTILKDEVICIFHKALKGKPGRNIRGQYIIPEDPKSLNQPCL LKFDTTSIQTKDYPTKVEYLATIGGILKYKEDILSIEDTLETKEVSLKTTGSLIGEIEND TEINITEADSLKEALGQGMEIQASKVNIQGNVGANAQIHAKEVYIGGFTHQDSKIFATDA EIQTHKGYLKAQNIKIHTLEAGIIEGKRVEVEKMYGGKIYAEEIFIQHLHSNAFLYATKQ IQVITMQKGENRFYIAANYSLDTKELYNTLLHKKNTSIKEAIQLTKELKVESLELKKLKN TADEMRQILIQYKKTKTTPPSYLLSKFEEYHARVVALKEKRQKINALSTAFKEARDALNQ LDSNTKNGIIEVQSGWIGYNEIHYIFHSPQKEFMLIPRAGEPSKAIFQNGQIHLIL >gi|197283018|gb|ABQU01000032.1| GENE 52 43864 - 44442 777 192 aa, chain + ## HITS:1 COG:Cj0799c KEGG:ns NR:ns ## COG: Cj0799c COG0632 # Protein_GI_number: 15792137 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Campylobacter jejuni # 1 189 1 182 183 116 39.0 2e-26 MIIALQGEIFFKEPTRIAIKCAGVIYEVFISLQTSNQITQTKGENLTLLTTHIIREDAQI LFGFLENNEKKLFDTLIKINGVGPKVAMAILSTYTPQTFAKVVESNDIKSMQRVPGIGPK SAGRILVELSGWSLELSQTNQTIKEDSTLHQVVLALESLGYKNDIIQKAIKGLEKDEVGQ MVKAALKKIQGL >gi|197283018|gb|ABQU01000032.1| GENE 53 44443 - 45774 684 443 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227372256|ref|ZP_03855738.1| SSU ribosomal protein S12P methylthiotransferase [Veillonella parvula DSM 2008] # 1 441 1 449 449 268 36 7e-71 MSKKLHLISLGCTKNLVDSEVMLGKLSEYENTQEIKEADVVIVNTCGFIEAAKTESIQTI LEALNNKKENAILVASGCLSERYAKELKEEIPEIDIITGVGDYDKIDLMIEKRKKGEKIL SNANGVFLANENDKRIISGSKIHAYIKLSEGCNQKCSFCAIPSFKGKLHSRTLESTLKEV QNLAQKGFSDFTFISQDSSSYLRDLGIKDGLVDLVKGIDKLAKEGIGIKSARILYLYPAT TSKKLIQTIIDSPIFHNYFDMPLQHISQKVLKQMGRGGEFKELLEMMRQAPNSFVRTSFI IGHPGEEESDFVELCEFVEKFHFDRINFFAYSKEEGTKSAKMEQIPNKTINARLKKINQI FQKQYRQSLKNLKNKELLCIVEGNSSEHEFFYAARDIRFAPQIDGEILINDKTIDETIQN GYYKVKITEILGEDIIGCIVKKG >gi|197283018|gb|ABQU01000032.1| GENE 54 45777 - 46766 601 329 aa, chain + ## HITS:1 COG:Cj1453c KEGG:ns NR:ns ## COG: Cj1453c COG0037 # Protein_GI_number: 15792770 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Campylobacter jejuni # 1 325 1 317 321 192 39.0 1e-48 MRLPLEFLDELKNAKNLLAFSSGTDSTALYFLLKEYEISFDIAIVDYGTRKQSKLEVSRA KSLCFWDNKKCYTLTTKPITKNFEAEARKIRYDFFYTLTLQESYQNLILAHQLNDNFEWF LMQFCKGSSVENMQIPKKSLFWEESQRKCHILRPMISISKNQIKSYLQKRNIFYFEDSSN LDIVFTRNYFRKNFANPLIENFTKGIHFSLENLAKQMPLDNLKDLGGYFIFKSSSLDLYK IDKATKKLGYCLSQAQKKECQLKLTQDYFSIVFGGKIALEKSQNNLFIFPYTSCTLTKTQ KELFRKHKIPKKFRFFMAKNSLTLSIIPQ >gi|197283018|gb|ABQU01000032.1| GENE 55 46842 - 47081 467 79 aa, chain + ## HITS:1 COG:no KEGG:WS0068 NR:ns ## KEGG: WS0068 # Name: INT # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 79 1 79 79 102 74.0 4e-21 MFERIDSILQNIEEAQAEIKLLLGMAKISFVDYIMIKRGSQDMPEELGAWNLQQIDNEVS KLKEAIDSLNKIKKEVLTW >gi|197283018|gb|ABQU01000032.1| GENE 56 47083 - 47553 576 156 aa, chain - ## HITS:1 COG:slr0242 KEGG:ns NR:ns ## COG: slr0242 COG1225 # Protein_GI_number: 16329296 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Synechocystis # 3 154 5 156 160 186 57.0 1e-47 MELQIGDKAPNFSLPNQDNAEISLQDFRGSWVVLYFYPKDKTPGCTQEACDFRDNLANLS GLNAVVLGVSPDSVKTHQSFIDKESLNFTLLSDTDKKALKAYGAWGLKKLYGKEYEGVIR STFVIDPQGKIAFLWKNVKVKGHIDAIKEKLQELQG >gi|197283018|gb|ABQU01000032.1| GENE 57 47592 - 47918 358 108 aa, chain - ## HITS:1 COG:no KEGG:WS0005 NR:ns ## KEGG: WS0005 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: Folate biosynthesis [PATH:wsu00790]; Metabolic pathways [PATH:wsu01100] # 5 108 3 105 107 65 38.0 5e-10 MWYKIFLENLLLEVVIGILPFERENQQKIRIDGEFVYFKNNEDEFLDYRDLREFLSGAFM QEFGLLEEALEFFAKEIPKNFPQIKKYRLKVTKLEIFGDCQVALEISQ >gi|197283018|gb|ABQU01000032.1| GENE 58 47922 - 48473 422 183 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310199|ref|ZP_04809354.1| ## NR: gi|242310199|ref|ZP_04809354.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 183 1 183 183 343 100.0 4e-93 MKAIVWLISVIVSVLLSGCVGKEIAPINHYQFEMEHKEVKCAKMELYGWLGIEAEAKIDT SKIAYIKEPNKVEYFAKNRWIDNLPNLLDVLVLKVARENCIVLAKDKQFLTDTLRLYILD LHYDENLNSAVFEALLEQTKGEQIEQFWILETKEVSKGGFEEIIRAMNESVLEGISKVFA RIK >gi|197283018|gb|ABQU01000032.1| GENE 59 48483 - 49280 539 265 aa, chain - ## HITS:1 COG:HP1464 KEGG:ns NR:ns ## COG: HP1464 COG1463 # Protein_GI_number: 15646073 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, periplasmic component # Organism: Helicobacter pylori 26695 # 1 258 1 271 271 117 27.0 2e-26 MEARLNYVLLGSFFVIVLLALAGFILWMGKYDRNLSEYREYYIYNKELPAGIRIETPVKY LGLPVGFVKQYELSGDKVEIIIWVKKEIVLNEGSKVVVERQGITGGGFFALIQGEGAPFG DSQKAILGFKENWIEQVGTKAEKVMGQLEVSLERFNRLLSEQNLNNIEMGLDNFSKSSGE FYGLLKEARGEIFQIGKVRDSFEQSLKAGDYNLRLILTPLLFELQQNSKALQQILQKGNG ILDDFRDSPSGFLFDSTKVKLGPRE >gi|197283018|gb|ABQU01000032.1| GENE 60 49291 - 50031 313 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 7 232 1 226 245 125 33 8e-28 MQNIQNIIEVKNLITGYGGNIIHNQISFEVHKGDIFAILGGSGSGKSTLLNTMIFLKKPL EGEVRILGKDIWRLDFQETLEMKLKFGVLFQFGALFSSLNVLDNLLLPLREYSNFNSNES ENIAYFWLTRVGLDSKVAKLYPSELSGGMVKRVGLARALCLSPKILFLDEPTSGLDPKGA RHFDELIKELRDLLGISIVMVTHDMDSVKGVVDRMIVLRDRQIFFQGSLEELSQITDSLD LFLYQI >gi|197283018|gb|ABQU01000032.1| GENE 61 50032 - 51147 790 371 aa, chain - ## HITS:1 COG:HP1466 KEGG:ns NR:ns ## COG: HP1466 COG0767 # Protein_GI_number: 15646075 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, permease component # Organism: Helicobacter pylori 26695 # 12 369 17 375 377 230 39.0 3e-60 MNASLVLTKKENATLRLDGIWDYRISKSILSQLQAIKLTNVKINIVLGEHFDLDFCGGGV LLEFVTELESQQRILENQLQQNPKSQKIFKILSTKEIPSNTNLTQNIIKIHSDSFIIIKN NIKTLILSLGFLGEILYTFLASFINFKSIRLKATFYFIQESLIKAVGIVALACFLIGIVI AYQGSIQLRQFGASILIVEMSSMLTLREMAPIITAIIIAGRSASAFSAEIGMMRATQEID AMRVMGFNPMTFLVVPRMLALCCVLPLVVFIADLFGLVGSMFVCQIQLDISTEQFLERFL QMVDMRHFWVGIAKAPFFGLIISFIGCFHGFSVAKDTRSIGVHTTKSVVESIFFVIAFDA ICSVIFTEMGW >gi|197283018|gb|ABQU01000032.1| GENE 62 51149 - 51877 885 242 aa, chain - ## HITS:1 COG:HP0231 KEGG:ns NR:ns ## COG: HP0231 COG1651 # Protein_GI_number: 15644859 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Helicobacter pylori 26695 # 63 240 76 261 265 79 33.0 8e-15 MKKIIAILACSLTFVNAGLEDNFKKSIKNIADVEVEVEFKKELVSFPSMFFVIGKTQGGD IFPVIVSKDGEYFIGLSNVLKLSNVDTQMMRDALEKAQKEKEQKDSKVLSQLFDGFLESD FVYLKGDGKNLPTKIVVTDPDCPYCREHLKNVDAELKEANLKLIFAPIHQKEAFIKAQLI MNEVAKLDAGDTKGKIKVLEKYYRDITLDAGQLKTDYSQITKNTDKIFQTGVIKGVPFIF EE >gi|197283018|gb|ABQU01000032.1| GENE 63 51962 - 53161 702 399 aa, chain - ## HITS:1 COG:VC0406 KEGG:ns NR:ns ## COG: VC0406 COG1459 # Protein_GI_number: 15640433 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Vibrio cholerae # 61 391 67 399 407 111 24.0 3e-24 MATFWVKFKKQGKIYHQKFNAKSQKELEINLRNQKIFVLSIEPKEDWLEKIMIFQKPKIS EVLSAFYQFKMGLKANLALRENLESIQRHTKNKMLQKQFSKTCQALYKGKELSLCFKEAG FSDFICAMISVGQKSGRLIEVVEFIIIELKNTQKNHKILKKILLYPLFVSLVMVAVFLGI TLFVLPQFESLFLGFNTNLPLASKSLLFMRSVVLDYGFFILVAVVVFLVLCINLYNKSLA FKTKFSFFLLQIPFLGKVFYFYQTSQFLLGFYWLYKNNLELKEVLEIAIKSVTNVYLNQK LQGIYTGIARGMLIADSFEGSGVWDSLSLQLLHGAKDQEGFLEALEVILSLHQEELQNKS ENLLSMMEPAMILVLGVLVLWLALGIFLPLWELPMHIKQ >gi|197283018|gb|ABQU01000032.1| GENE 64 53161 - 54684 1206 507 aa, chain - ## HITS:1 COG:PA2677 KEGG:ns NR:ns ## COG: PA2677 COG2804 # Protein_GI_number: 15597873 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Pseudomonas aeruginosa # 30 505 68 572 575 303 36.0 5e-82 MKQIYDYFNGEFKLDSISLAEQKEFFEEAANKLKVPLFKLRDIHKETALLLSVEQMLHFG AIVVENKENKLVIALKNPLDKTHQDTLRMLFRDFLIKFGLIAKEDFKEAILWLKGQERLK EILEQIPYEITKDSKGEHSSILELVKLVLQEAVYKRASDVHFEKDFESLRIRFRIDGVLV EYLCLEDWLLNPLSSCIKLLSHLNITETKIPQDGRFSLGLEIRGGEQRIFDFRVSTLPLI EGESIVLRILDKQKTLIPLEHLGFSSSELESIVELFNLPYGLVFITGPTGSGKSTTMYGI LNILKERNLKIITLEDPVEYRLKHISQVAMSDKISFAGALRNVLRQDPDVIILGEVRDKE TLQIAIQAAFTGHLVFATLHTNDSLDTIVRLLDMGLEPYFIAQSLSGIIAQRLLRKLCIY CREKQNEGYVSRGCEACNYTGYNTREAIAEILVMNQDLEDFIFKKIEKTQILSRLEQANP NFTLIKKAFNKAECGITDLKEVYRVVK >gi|197283018|gb|ABQU01000032.1| GENE 65 54681 - 55280 527 199 aa, chain - ## HITS:1 COG:no KEGG:WS0542 NR:ns ## KEGG: WS0542 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 21 199 86 303 307 69 27.0 5e-11 MLRVAMLFIVVGGFLIGVGFLGMPKTKETSPKACWYVSAKTLNIREKPSLESAIWGVLQK NTKICEYWGVQNGFLQISRGWVAMDYLSSNPIPNPKIQEKLAFENKKIVLRSHLKEENKD SLKEAREYFANSDYRAAKNLALRANYENPKNPESWEIFTKSLYLEGKKQEAISILEKFLQ TQYDENLFNLLEEMQGDKI >gi|197283018|gb|ABQU01000032.1| GENE 66 55281 - 56747 1190 488 aa, chain - ## HITS:1 COG:Cj1474c KEGG:ns NR:ns ## COG: Cj1474c COG1450 # Protein_GI_number: 15792789 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulD # Organism: Campylobacter jejuni # 7 483 22 469 472 229 36.0 6e-60 MSVSFACENRVFDLTLQDFEVKIYEVLSEFANTCSFSVVYGDDEVKEHLDKNLTMVNFKQ KDLEFVFDLLFSQANLHYSYANHILTLKTKDTKVFKINYVSTNRQGSSNTSVSINNEDNF SRFPNYAYVGSENSSQTPSKSGINITSEDGFNFWETIKLEILGVLGVQEDFQESYVVINK GAGLVSVRGDKEGLERVEAYIQKLHQRLQQQVLIDVHILSITHTHSDTTGINWDGLYNIQ NIMIPTFSEGASFGGGGEVGNVSGINIVGQNGSNALQYGINIFSQGLSLNRIIEFLKTYG KVESISNPKVLTLNNQPAMISVGDILRYQKSSIYQNTNAQTTLTNTDNEYPSIFAGVLLD ITPVIFGDEIMLKINPSITKTKENRTEIPATAFESPPNLTTNQLSSIVSVKNNQKIVLGG LISKNISSIENKIPVLGSIPLIKPLFSYSQDIERTEEIVFIIEPKIISQEIQENLSLKSL GYQLMQGE >gi|197283018|gb|ABQU01000032.1| GENE 67 56786 - 57040 259 84 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310208|ref|ZP_04809363.1| ## NR: gi|242310208|ref|ZP_04809363.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 84 1 84 84 153 100.0 3e-36 MKKIGGLLILAGFVFGYDPFFYEESEMRLFGVMQDRAKINGKWLILGDEIEGFKVMQIQE KCVILENENQEIKTICLEKTRRFF >gi|197283018|gb|ABQU01000032.1| GENE 68 57037 - 57588 394 183 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310209|ref|ZP_04809364.1| ## NR: gi|242310209|ref|ZP_04809364.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 183 1 183 183 293 100.0 4e-78 MKEILKKIESFLETKSKREMILIFVLAFLCFFTLTFMLIYDRAWNYFLTIKQTKLDLERQ LLSLQEQPPIPKVYGDKELKSEIQKLEDSIVLQEKQKERLQGNFNHFLALNHLGKKYFLN TFVIQQEGEEFLLYGEGNFKEAFLFLEELENLQMLEIKGASIYPKKKNLEFFMNLEALYG VLQ >gi|197283018|gb|ABQU01000032.1| GENE 69 57585 - 58658 596 357 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310210|ref|ZP_04809365.1| ## NR: gi|242310210|ref|ZP_04809365.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 357 1 357 357 631 100.0 1e-179 MIRFFSGKEIVFYFLPTKECDRENLEDFLEEKICKILNLKMDCEYFLRYFEIQNNFYCLL LSKEALQGYTQDSEDFLTHPVFFTSQMLNANKEYQFFIVENTFCGTEFMLVGYFKDKMIY LQQFNALEDAMARMMEFSQNYPNAAFYFWSLDKSNEKEFQKYSSKIEILEQSWESLTLEE QFNFNPIQKEIPLRKQRVGKLLSFMAVGGICGVFYPLLLFAWALWEGENCKNLQEQIKKQ KDTQQLQVQNYSALQKEILALEQKHQKLQEVFAQNEAFLQRFLPTSPRISSFFEQISSYL QIQDVKIAYFHANKNIFEFLLVGEGSAEFLRILEQEKLGKLEVIQAIDSFYFVRIAV >gi|197283018|gb|ABQU01000032.1| GENE 70 58755 - 58991 189 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310211|ref|ZP_04809366.1| ## NR: gi|242310211|ref|ZP_04809366.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 78 1 78 78 117 100.0 2e-25 MHTKKAFSLIEIIIFIAVLSILMTTLLQSVALNLSADNHQSQELILQKVTICNKINSQCV YFSNIQEILYPYEVNATK >gi|197283018|gb|ABQU01000032.1| GENE 71 58988 - 59794 329 268 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310212|ref|ZP_04809367.1| ## NR: gi|242310212|ref|ZP_04809367.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 268 1 268 268 464 100.0 1e-129 MKQAFSLIEITIVLGILGIIGVISGFSLLKIYQHHTPIQKNIKHQLQTQNALLQVKKILQ NSIQPSLMLDTQESLSSSPLNLKNKTLIFYPKIREKISIGSYSIPCLHGFFDPKTLQINA HLSLEFLTIHKDSTASLNQKCTSYTHSLEALFVLQNFTAPKDFYSQEYKAKILHLNAISM QSTIPIFLQTHKNTNLSLLPKIYFLSQPFMLHFNDSLSLVTKDKTYLLAKNLDSFYLSQN DLGIILKLCTNHQNQKICIEDFIAKETL >gi|197283018|gb|ABQU01000032.1| GENE 72 59791 - 60171 277 126 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310213|ref|ZP_04809368.1| ## NR: gi|242310213|ref|ZP_04809368.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 126 1 126 126 213 100.0 3e-54 MRAFVLLPLILFVILGAMVLWISLKQESLTQEISTQHTHTKWLSLYMVSFKEALKDEIAS KNLESQGFQTFSMTIDNHFHYTAIIKKFDSSLTKNNLYFVDIFGIYQDDFQTFSLQKDFI LVLDDF >gi|197283018|gb|ABQU01000032.1| GENE 73 60213 - 61472 1216 419 aa, chain + ## HITS:1 COG:jhp0121 KEGG:ns NR:ns ## COG: jhp0121 COG0814 # Protein_GI_number: 15611191 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Helicobacter pylori J99 # 2 419 13 413 413 390 55.0 1e-108 MKWTKFDTRWMLSLFGTAVGAGILFLPIRAGTGGFWPVVVMTILIFPMVWLSHRALSRFV NESQSVEHDITHAAEEYWGRNTSFFITILYFFAIYPICLAYGVGITNTFASFFINQLQLT SLYDSQTMQLYPSVRAILAFVLVSAMMSIMLLKEETITKACNILVYPLCLVLFAFSFYLI PHWKLEIIQTAPSAKDFIEVVWLTLPVLVFSFNHSPAISTFTLSVRREYGEASSQKANQI LFRTAVMLLIFVMFFVFSCILCLDSTDFQAAREANIPILSYFANKLNVPFIAYGAPLVAF LAIVTSFFGHYFGAYEGLNGILRKAIKMSGNENPNIKGIKIFSTIFMYVTIIVVAYLNPS ILGFIEDLGGPIIAMILFIMPMIAIWGVSKLKKYKNPALDIFVIITGILTITSVVYKLL >gi|197283018|gb|ABQU01000032.1| GENE 74 61475 - 62836 1147 453 aa, chain + ## HITS:1 COG:Cj1624c KEGG:ns NR:ns ## COG: Cj1624c COG1760 # Protein_GI_number: 15792929 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Campylobacter jejuni # 1 453 1 454 454 560 63.0 1e-159 MSNLSIFKIGVGPSSSHTLGPIIAANTFCKLLENKNLLEKTHQINCTLFGSLSLTGKGHL SDKALLWGLSGITPKEITASMQEKILKGVFENKTLNLFGKKEISFVYEKNIHFCNDFLPL HENAMEFCAYGDDKKLLLQERYYSIGGGFIKDQMQMQQDNATQATNQPLQINNAKELIQA AKKHKKNLSGISLLYEKQFHSLKEIKSYCLEIWEVMQDSYHQGCHPKNLTLPGPLNLHRR AKGLYERIHPTTDPFGILDYISLYAIAIAEENAGGGRVVTAPTNGACAVIPSVMLYLKNH SVGFNDSLAIDFLLAAMMIGSLYKKNASISGAEAGCQAEIGSASSMAAAAMVTILGGNIE QACNAAEIAMEHHLGLTCDPAFGLVQIPCIERNAFGAIKAISAARMAMTRKSRPVVSLDN VIATMYQTGKDMNAKYRETALGGLAKTLSKSVC >gi|197283018|gb|ABQU01000032.1| GENE 75 62845 - 63453 673 202 aa, chain + ## HITS:1 COG:Cj0308c KEGG:ns NR:ns ## COG: Cj0308c COG0132 # Protein_GI_number: 15791676 # Func_class: H Coenzyme transport and metabolism # Function: Dethiobiotin synthetase # Organism: Campylobacter jejuni # 1 191 1 197 201 203 53.0 1e-52 MQIFICGSHTDVGKTSVSAALCYVYGFEYFKLIQAGIPTDSQKIQELSPKTKIHPQGILL KTPASPHIGMQIENIKYNGLEISLPRSNHLLIESAGGLFTPLDSKMCMIDYLEKYRLPTF LVGSYYLGGINHILLSIEALKQRNIEILGLIISKEQNPQMDDFIQNYAQIKIAHFHTYTK DFQIQAQNLKQELEENQILISK >gi|197283018|gb|ABQU01000032.1| GENE 76 63532 - 64083 866 183 aa, chain + ## HITS:1 COG:HP1236 KEGG:ns NR:ns ## COG: HP1236 COG2952 # Protein_GI_number: 15645850 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori 26695 # 1 183 1 183 183 159 49.0 2e-39 MKLRLPHAPYIGNKIALDLSNCGFVNVLHGIEPISKIAQKFIEEDIKEEMRIEEKAREIL EENLDEIEFMQADEHQLFWKIKHKLAENQNFILNWEDRYNNLAHKILDKLYDEDLIEFST SETRVKNIIFKAIDSYTKIYNEIEEIVNEKISNYKRKIIFGSEEYDLIFDRLYQEELKKK GFL >gi|197283018|gb|ABQU01000032.1| GENE 77 64083 - 65190 1164 369 aa, chain + ## HITS:1 COG:jhp1158 KEGG:ns NR:ns ## COG: jhp1158 COG0505 # Protein_GI_number: 15612223 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Helicobacter pylori J99 # 9 369 4 366 375 433 58.0 1e-121 METLENAWIYLENGMFFEAKSFGASKTSVGELVFNTSMTGYQEITTDPSYAGQFICFTMP EIGIVGTNPQDMESKGVFAKGILCHHYNSFYSNFRADESLSSFLKKHDVMGLCEIDTRGI TQILRKQGAMMMVASTEISNKEELKKILESSPRIEEINYIQEVSTKESYPHNEGRFDFST MDFSRPKTNQTILAIDFGIKKSILRELVNAGFNVKVIPHNFDAKALIAQYQNKEFDGIFL SNGPGDPQVLTKEIAEIKKLIEAKIPLFAICLGHQLLSLAQGYPTYKLKFGHHGGNHPVK NLFTQQIEITAQNHNYSIPESIQEIAEVTHRNLFDGTIEGVRYKNALICSLQHHPEAGPG PLESTALFR Prediction of potential genes in microbial genomes Time: Tue May 24 02:19:01 2011 Seq name: gi|197283017|gb|ABQU01000033.1| Helicobacter pullorum MIT 98-5489 cont2.33, whole genome shotgun sequence Length of sequence - 6874 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 3, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 24 - 83 3.4 1 1 Tu 1 . + CDS 123 - 848 241 ## gi|242310219|ref|ZP_04809374.1| predicted protein + Prom 859 - 918 5.4 2 2 Op 1 5/0.000 + CDS 974 - 2146 612 ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes 3 2 Op 2 5/0.000 + CDS 2124 - 2774 438 ## COG2830 Uncharacterized protein conserved in bacteria 4 2 Op 3 . + CDS 2761 - 3492 439 ## COG0500 SAM-dependent methyltransferases 5 2 Op 4 . + CDS 3533 - 4261 602 ## HP0174 hypothetical protein 6 2 Op 5 . + CDS 4265 - 5722 2033 ## COG0305 Replicative DNA helicase + Prom 5892 - 5951 11.0 7 3 Tu 1 . + CDS 5983 - 6874 627 ## gi|242308805|ref|ZP_04807960.1| predicted protein Predicted protein(s) >gi|197283017|gb|ABQU01000033.1| GENE 1 123 - 848 241 241 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310219|ref|ZP_04809374.1| ## NR: gi|242310219|ref|ZP_04809374.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 241 11 251 251 445 100.0 1e-123 MYFTGCSIIETIKNTDNTELYNQCKIDSWSHFSAEQIEKCTKLAYLLCEKYNPNKALCAT QVADTIKWKSLTPSEQQQQKIAEKEKKFEAWFKKKIDKNAVILRSANPIVYKSIIIDCNN NEYITLRGEDYEMFAYLAVKKNGWKYFTSNMLPLYDLSYSYSQNQLNKYKKLADSLFEGT LTKKLESFSFHDMALLYLYIRTTQPYASYKHFSATLILSELFLPKFCVNSSYKFLISNNG L >gi|197283017|gb|ABQU01000033.1| GENE 2 974 - 2146 612 390 aa, chain + ## HITS:1 COG:Cj0306c KEGG:ns NR:ns ## COG: Cj0306c COG0156 # Protein_GI_number: 15791674 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Campylobacter jejuni # 2 379 3 380 380 307 48.0 2e-83 MIQSLLDKLKMQANLRTLSPQKHQDLEIQKNGKWLFNLASNDYLNLASNQEFIHEFLDSE LFKKNCFFSSSSSRSLSGNFEIYEAFESHLESIYHKKALLFNSGYHANVGILNALSRLKN VLFLADRSIHASHIDGLKSFSKISLKRFLHNDMQDLEKILEKNANNFELIFILSEGLFSM EGDFAKIESLIALKNRFENVYLYIDEAHSIGSFGENGLGICYPYLKDIDFIILTFGKALA SMGACVLCNQDFKDYFINFARSLIYSTALPPVNIAMSYFAFLHLPKLHQERKNLAKLSFD FKSSLQEATNYEIMGDYNILSLILKENQKAVFFQKELEKRGFFAPAIKPPTIPNNRACLR FSLTQKMPFSKLQSLHHILKEIDNEYISRT >gi|197283017|gb|ABQU01000033.1| GENE 3 2124 - 2774 438 216 aa, chain + ## HITS:1 COG:Cj0305c KEGG:ns NR:ns ## COG: Cj0305c COG2830 # Protein_GI_number: 15791673 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 9 216 11 203 203 96 36.0 3e-20 MNIYRELNNNKNILLIFGGFASHPTHFKNFIPKNYDWILVFNYQHLKFETLNNLLSSLQD KTFHLFAFSMGVWAANLFLNSTQCPLKFASKTAINGTEYGIDETYGIHPKLFALTQKRFN LESFKNNLFGEHLPKTQNFTFLEESLLKKELQFFLDHRKIIENQFPWDRVIISLKDEVFF TEIQENFWHYKGYQNQISKIQAPHFVFFDWEFYAKI >gi|197283017|gb|ABQU01000033.1| GENE 4 2761 - 3492 439 243 aa, chain + ## HITS:1 COG:Cj0304c KEGG:ns NR:ns ## COG: Cj0304c COG0500 # Protein_GI_number: 15791672 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Campylobacter jejuni # 10 241 3 224 228 123 38.0 3e-28 MLKSKLQKTFLKAQNTYTSAAIIQEKMQNTLLEILMKHKQKIHFQNILELGCGNGSFSKK ICNLLTFEHFLALDIVDFSKEFVGEKIQFLQFDMENIKMIKNFYQNLPFDFIASNAALQW CNQNIFLPKLSSLACKNAYLLLGIFGTKNLFEIKKFLGVGLEYLDIHQYYDILKKDWDIL ECFSTLETLHFHTPIEVFRHLKNTGVNVYGDSFILTKKRLLAYQEYFNNQLTYEPIYLLA QKR >gi|197283017|gb|ABQU01000033.1| GENE 5 3533 - 4261 602 242 aa, chain + ## HITS:1 COG:no KEGG:HP0174 NR:ns ## KEGG: HP0174 # Name: not_defined # Def: hypothetical protein # Organism: H.pylori # Pathway: not_defined # 12 240 24 255 258 90 29.0 3e-17 MGNIIIQTKQHLQNAKNDFFTPFMLKLAILPLVISLLFWAIIFYFFGDNLFLELYDFIRP DLAIETSWLSWIQSLLDFIIKATLFIVLFVSFLVLSLLSNLIICSFLTPLVVNFIHKRHY QNIQIAPDTSLFSSILSLVWIYLVYGFFLLILIPFYFIPFVGTLFVLLPNYWLFSKTLSQ DVGENIFKKTEFKTIKKTYKTSIRSLILPLYGLSLIPFLNFFIPFFALAALTHLFFTIKQ GD >gi|197283017|gb|ABQU01000033.1| GENE 6 4265 - 5722 2033 485 aa, chain + ## HITS:1 COG:Cj0562 KEGG:ns NR:ns ## COG: Cj0562 COG0305 # Protein_GI_number: 15791923 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Campylobacter jejuni # 2 454 7 455 458 375 47.0 1e-103 MEVQIERAVLSSIFFDPEQLDNVAEILSPEDFLYTPNQNIFAAMLELRKLDMPIDEEFIL KKSTKSRPISQEEILNILATNPISDLNSYINEIKEDSTKRKLHSLAMKINEASNEADHPV KDIIDYLQSELYKITNVHENREFKDSKEVTISTLKYIEEMKQKGNSVLIGVDTGFHSLNE KTTGFGKGDLIIVAARPAMGKTTLVLNMAQKALDTGRGVAFFSLEMPAEQLMLRMLSAKT SIALQHLRVGNLQDDEWQRLTHAADVMSNAPLFIDDNSLLTIHQFRTKMRKIKSKHPEIG LAVIDYLQLMSSADGKKDRHQEVSEISRGLKMIARELEIPIIALSQLNRSLESRSDRRPM LSDLRESGSIEQDADIILFVYRDAVYKQKDEKEKEEAAKKEGKEYKSNFIPKNEEEAEII IGKQRNGPTGVVKLTFHKHCTRFVDSTDSRNTLEIIYESAAQNTQTQFTPPPNDKDNMNI EAPII >gi|197283017|gb|ABQU01000033.1| GENE 7 5983 - 6874 627 297 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308805|ref|ZP_04807960.1| ## NR: gi|242308805|ref|ZP_04807960.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 297 1 340 365 211 48.0 5e-53 MASISNTYNNYIGAYTSLYSNSNKTSNTQETINTNTNDKIQEMEDILLIEPQKHDFFDEL FALHTDTNTAFLEFMDLKQYLLENVPLPTEQNFEDSKNILSQEMKNILNNAYENKGESSK EFQGLLHYAQWFIKNDKEVPKTTQHAISLMQQINSNMDYDTAKEIDISLAFYKTYTTSEA DCLSDFFALADLYGLIPQESKNKISENLQISQRYLYHQGGYLDKYFQLGDFVISWESDYF DGKNYTISNNQNNLSNNLLTSLASNFDTTQSIFDILNQKEKLEKENQDLKNKRAIEA Prediction of potential genes in microbial genomes Time: Tue May 24 02:19:28 2011 Seq name: gi|197283016|gb|ABQU01000034.1| Helicobacter pullorum MIT 98-5489 cont2.34, whole genome shotgun sequence Length of sequence - 8367 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 2, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 206 - 265 7.3 1 1 Tu 1 . + CDS 288 - 2477 2421 ## COG2838 Monomeric isocitrate dehydrogenase + Prom 2486 - 2545 6.4 2 2 Op 1 16/0.000 + CDS 2648 - 3940 1270 ## COG0593 ATPase involved in DNA replication initiation + Prom 3993 - 4052 3.5 3 2 Op 2 5/0.000 + CDS 4114 - 5181 1155 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) 4 2 Op 3 . + CDS 5211 - 7529 2901 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 5 2 Op 4 . + CDS 7538 - 8185 772 ## COG0344 Predicted membrane protein Predicted protein(s) >gi|197283016|gb|ABQU01000034.1| GENE 1 288 - 2477 2421 729 aa, chain + ## HITS:1 COG:Cj0531 KEGG:ns NR:ns ## COG: Cj0531 COG2838 # Protein_GI_number: 15791892 # Func_class: C Energy production and conversion # Function: Monomeric isocitrate dehydrogenase # Organism: Campylobacter jejuni # 1 729 1 733 734 1082 76.0 0 MKITYTLTDESPALATYSFLPIVKAFLKKANIEVETSDISLAARILAQFPENGYKDELTL LGNLVEMPDANLIKTPNISASIPQLKAAIKELQQKGFKIPDFPDEPQNDEQKTIKEKYQK VLGSAVNPVLRQGNSDRRCTKAVKEYAKKNPYRVIPFDKNSKSRVSYMQKGDFFDNEKAI LIQNPTTAKIEFIDNNGKSIVLKEGLKLEKNEILDATFMSVADLSSFYDEQIEVCKKENI LLSLHLKATMMKVSDPIIFGYALKAYFKELFKEFSEEFTKLGINPNNGISELLSKIEHSP KKAEILAKYNEILANNAPLSMVNSDKGITNLHIPSDVIVDASMPAMLKNGAKLWDKEGKE CDTNALIPDKTYATIYEAVIEDLHQNGTLDPRSLGSVSNVGLMAKKAQEYGSHDKTFVAP DEGVFRIIDEKGNTLLEHKVQKGDIYRANQAKYDAVINWIDLGIQRAEISGDEAIFWLDS KRPSNKIMIDLVQTRLKEKGKNIKILAPKEACLESLKLIRAGKNCISITGNVLRDYLTDL FPILELGTSAKMLSVVPMLNGGAMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQAS LEFFAQKMNNTQAQILANCLDEAIAQWLDNNKAPSRKVKEDDNRTSHFYLAMYFAKALAM QDKDTNLRDFFKPIAEELENKQDIIRAEYINTQGNKVDLGGYYKFDDFKCNTIMRPSTTF NAILDKISQ >gi|197283016|gb|ABQU01000034.1| GENE 2 2648 - 3940 1270 430 aa, chain + ## HITS:1 COG:Cj0001 KEGG:ns NR:ns ## COG: Cj0001 COG0593 # Protein_GI_number: 15791400 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Campylobacter jejuni # 4 429 6 434 440 405 50.0 1e-113 MHPILLQLKKEITPFEFDNYINQLHFNEKYSRDDRIIFNAPNAIIASWIKTKYASKIAQL FEMQNGFKPEIIIEVFNPNKKKDNKHNTKKIQNATNLNPSLTFNSFIVGNSNSFAFNVAK AVAQNQSTIYNPLMIYGNTGLGKTHLLNAIGNANVNVGKSVIYTTSEQFLNDYLLHIRNN TMDRFREKYRACDYLLIDDIQFLSGKNQIQEEFFHTFNELKKNNKQIVLTSDRPPKNMDG LEERLKTRFTSGLLADIQPPELETKINIINAKCELDGIHLTPQVIDFIAANINDNIREIE GVLVKLNFSINVTNVQEVTIDFVRDILKEYIKETKENIDMDEIIEIVSKYYNIKPSDIRS KSRSKNIVTARKIVIYLARTLTPNSMPSLANYFGMKDHSTVSKAMKSIQEEINKNPNFKT IIEELKNKIK >gi|197283016|gb|ABQU01000034.1| GENE 3 4114 - 5181 1155 355 aa, chain + ## HITS:1 COG:Cj0002 KEGG:ns NR:ns ## COG: Cj0002 COG0592 # Protein_GI_number: 15791401 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Campylobacter jejuni # 1 355 1 355 355 266 40.0 4e-71 MNITLQNSVLDNIFTALQPFLDKKDSSQITSHIYLETRDNQLICKATDFEMGLCSMTDSL TINEQGIATVNGKQILDIIKRLKEGEVNLYTNNENLHIKQNKSSFKLPMFNAQEFPTFPE YETLPKLEINSLELISSMKKIFPVIDINNQKRELNGALLDIKEYSYNFVATDTKRLAMVK FDNASGNNLALIFPKKAITEIQRLFFDNIELFYNERNIIIKSQNYIFFSHLINGKFPDYE KILPKEIQTELVLQKSSIIEGIKVINSVTNDVKLTFRPNEILFESLSQDNSEAQTQIEIN LPITEEIEIGINSRHVLDFLSQIDSVEFIWGLNGKNAPFVLKNGNFSTVVMPIIL >gi|197283016|gb|ABQU01000034.1| GENE 4 5211 - 7529 2901 772 aa, chain + ## HITS:1 COG:Cj0003 KEGG:ns NR:ns ## COG: Cj0003 COG0187 # Protein_GI_number: 15791402 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Campylobacter jejuni # 4 772 3 769 769 1078 70.0 0 MENKQYSGSSIKVLKGLEAVRKRPGMYIGDTNINGLHHLIYEVVDNSIDEAMAGYCNEIS ITLTKEGSAIIKDNGRGIPVDIHPTENIPAATVVLTVLHAGGKFDQDSYKVSGGLHGVGV SVVNALSKSLQMTIYKNGQIYRQNFAQGIPQDELTIIGECKENGTTIEFIPDGTIFEVTE FQREILAKRFKELAYLNKQITIHFKDERDNFEETYHFEGGLNQFVSDLNKKPLISTIISF EGLENDVEMQIALAYNDGFDEKVLSFVNNIRTIDGGTHESGFRMGLTRVITNYIEANANA REKDSKITGEDIREGLIAIVSVKVVDPQFEGQTKGKLGSSFVRPIVQKLTFEKLTKFFEE NPNEAKAIMQKALLAARGREAAKKARELTRKKETFSVGTLPGKLADCQSKDPSISEIYLV EGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSEEIKNLITALGCGIGEDFD ISKIRYNKIIIMTDADVDGSHIQTLLMTFFFRYLRGIIESGYLYIAQPPLYRFKKGKKEI YLKDEKALSEYLIENGIENFEFQGIGTKDLIEFFKIVAHYRSTLNELEKRFQLIEIVRHF IENPDLIGMKNQELYEQIKQKIQSLNFNILNEMLDEQRIHLYVQTDSGLVDIKIDDELFT HPLFEEAHFVYGKLKERNLEFLQGNDPVEMLEKIEESSKKGADIQRYKGLGEMNPEQLWE TTMTPENRRLIRVEIKDVEEASDVFSLFMGDEVEPRREYIQAHAKDVKHLDV >gi|197283016|gb|ABQU01000034.1| GENE 5 7538 - 8185 772 215 aa, chain + ## HITS:1 COG:HP1509 KEGG:ns NR:ns ## COG: HP1509 COG0344 # Protein_GI_number: 15646118 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Helicobacter pylori 26695 # 2 215 41 262 262 177 46.0 2e-44 MVLLSGIIDFFTSINGIFYLIAYLVGGIPFGLIYAKVFGGVNIREVGSGSIGATNVLRSL KEINPKLAKKLAILTIISDALKGIIVILAAKFFGLTYEAQWMIAFLAVVGHCFSPFLKFE GGKGVATSVGAIGVFLPIEAILGLVVWFLVGKFLKISSLASLFGVLFGVIMSFVLHPDIP HIHSHAPLVLVAVIIFYKHIPNIIRLFQNKEQKVL Prediction of potential genes in microbial genomes Time: Tue May 24 02:19:29 2011 Seq name: gi|197283015|gb|ABQU01000035.1| Helicobacter pullorum MIT 98-5489 cont2.35, whole genome shotgun sequence Length of sequence - 2123 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 2121 2080 ## C8J_0705 hypothetical protein Predicted protein(s) >gi|197283015|gb|ABQU01000035.1| GENE 1 3 - 2121 2080 706 aa, chain + ## HITS:1 COG:no KEGG:C8J_0705 NR:ns ## KEGG: C8J_0705 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_81116 # Pathway: not_defined # 2 391 171 519 1049 82 26.0 4e-14 TLIGDTIDIRGGKIENTSGGTNKDNSIYFVGENIYIDADAVNLSSNNNIYATAFKEGYIQ RQMKNFQKDGFTFGNFNQLITDESYAYNDNGHITDKSGQSNFKKVITLGNGNADEALSEW YWFANGWNNNNGDTRSVDEFRLVGNIDFSKQIGGRDRYIIDFSKNENDIDRSFMYSGNYY DPNNDNNYNDNMVVGKDSANAFQGIFDGGGNTLSNVDIDYANSNYANYIGVFGYASNSTI SNLNLDKVNIAAKKEVKKSASGESIGSLLGYGENLKISNIFVKDVDISFSVGSYTADLVQ DKIGGFIGDIKNSTLDQIILDGFNINTTSEAGLALIWAGGFFGRSIGVNASNVAIQGNNN IKVNMFNWGGIVTPGTPPSIYLGGFAGLSQDGNLKNISIAVDTISGEGQNLQHAVIGGFA GWGHQINGDNINLNIKSLFGKIKGRTQQGSGNNQGLFMGGFGGRITSSDISNISINNIEE IVGENTLKTSDSFNLDSDKTYIGGFAGNMQQSGNKISNVVLNNIGKLSGVSQYDNVYIAG FVGSNDFSNVSFNNIYLYFNPNSTILAEANNGTAYKGKFYGSFNNFNPSLSNIHLYYKDG TLNGINSDSKDYHSTSNPNGQIFLNPYANATQGKESFKQALEKQNNSGGAFETNNIQYTQ DSNGNSIYHFANTTGANVTPPSIIPPSIDTDPSLPNIDLGNVALEK Prediction of potential genes in microbial genomes Time: Tue May 24 02:19:40 2011 Seq name: gi|197283014|gb|ABQU01000036.1| Helicobacter pullorum MIT 98-5489 cont2.36, whole genome shotgun sequence Length of sequence - 6177 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 525 - 584 12.1 1 1 Op 1 . + CDS 689 - 3271 2741 ## Cj0967 putative periplasmic protein 2 1 Op 2 . + CDS 3338 - 3676 528 ## HH1517 cytochrome c553 3 1 Op 3 . + CDS 3728 - 5533 1831 ## COG2831 Hemolysin activation/secretion protein + Term 5613 - 5669 0.1 4 2 Tu 1 . - CDS 5733 - 6176 360 ## Abu_2218 hypothetical protein Predicted protein(s) >gi|197283014|gb|ABQU01000036.1| GENE 1 689 - 3271 2741 860 aa, chain + ## HITS:1 COG:no KEGG:Cj0967 NR:ns ## KEGG: Cj0967 # Name: not_defined # Def: putative periplasmic protein # Organism: C.jejuni # Pathway: not_defined # 27 770 19 762 762 397 34.0 1e-108 MRGYPLSKNGILGIFVCVSLTTSNVLFAAEQANKIGAKSYQTPKNVFLDSQVWDSKESIF KKVNGKNYYGIFQKGAVDGVSLEFYNPKNPNSSNQERAMQILTPNISQKEIISIQGTHAA VSSNRELHPIYVVPFLVAGYSSMGSATNNKLVLKEGELSSVNFIKPSVIKNDNKPPKKKK EDNFNYLITAAIANKGNANFNIVELREGSYINMGVDDTYSLQLNGAPYVAGGVTIGGEVR GNKVVAFGGAEMDFHITPYGMTETNEFVFDERITHIIGGLAQNGSARENQVHLNGTRFIM HGPSGVYSSYSAAHIAGAFIDVDDGKNHNAINNTLLIDSFNLGLKVDESKLFFYDSIFFG EFFGGKTAKGNANGNKIILNNVPSLSRVSKGVKVQGIYEFFGGYALEGKAEDNVLDVALK SPLQITATYLRQNSFGFYGAYASDGASNNTIKIRNNLTVIDGTDNINDRVNIIAGRTLAG KANNNIVDFKDSQVALPLYVYATWSEDFEGSIHYPEEAKGNKVSLDNVFGRKNIKSGLTA INVYDNTISYHNVEAQSSGESQDKESSVYIKAVNVAKGNVFRASNYWATSRLNIYGIRGE VEAYDNQVIFNNVSFNADRENSGLVLVGGVGASTYHNVLSIENIQIGEYNPDEDYIYIAA SALPNAESNLALSYANTLYIGGDVEMHRNTILSALSGSIIRVPSYSKSNADIITVPAPSL GQLTEDNHLILEKHMHAKVINNFEHYSFIYHKDNKASFAVSLESPINLSSEAIISLLLRK GDNAPKKGSKIPLITSMGGFSDIDGNNLTSAEVSNLLETIAKNKNTFKYSEIPQLQKAGL KVIPIKLSLGDDGRTIYAEI >gi|197283014|gb|ABQU01000036.1| GENE 2 3338 - 3676 528 112 aa, chain + ## HITS:1 COG:no KEGG:HH1517 NR:ns ## KEGG: HH1517 # Name: not_defined # Def: cytochrome c553 # Organism: H.hepaticus # Pathway: not_defined # 20 109 14 101 101 94 53.0 2e-18 MKKLVALMVISGFCFAAENALVYQEGAEIYKKCIACHGQNGEKVAPGSKRGITIGGMDKD YLVEQLKGYVAGTADNGGAKVIMYANMKNWRFTNAEIEAVSTYISHLPKVKN >gi|197283014|gb|ABQU01000036.1| GENE 3 3728 - 5533 1831 601 aa, chain + ## HITS:1 COG:Cj0975 KEGG:ns NR:ns ## COG: Cj0975 COG2831 # Protein_GI_number: 15792302 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Hemolysin activation/secretion protein # Organism: Campylobacter jejuni # 34 601 1 574 574 395 42.0 1e-109 MKKYPILISSTLAALLSCNAFAVSQSDAKAIEEMIEISPYRDIPQNKNIQNTLKNRQSPL KIEQQDKQETTQPQDSNKESGKKEIQNKQDEQVGKDGLVMRQDQDFRFKYEFSIDTKDGD KTITLEDLGINEKWLSESIVALKISDLNVSTLQEIANIVSYYFQYNGYPSATAYIPQQEI TDTIHINIMIGKLGEYQVRNYSQARDWAITSKLRDSLKGKILRTRELEDVIYRINEMYGV QAKGTLTAGKEYGTTDVVIDVEDSTKASAMLFFDNYGTEGAGVYRMGVSGQLNNVLGFGD SLNLFAQLSDEIQKNYGATYTTFLGNLKISPRISRGNYELGGPYSSLNAYGTSLDIGVDL SYPVFINTVNSLYLIGGYTHRKLEDIYGDFGVNFNKHSDSGYIGVEGTFGEIPNNIFSYN LRLTYGDVVPDSELLTFSKAMDEFWKFNAYLSNSYYFNEKLTHIINVSYQQDIGGFELDS SETASLGGPYGVRAYTNGFGEVDNMVLATFGLRANVVNPNFYVTPFYEFAYGWNDNYPNN AIGVAGRGDKNDLFIDAAGLELLYMKPNMFYVKLDLAKAVTKLANDGRRRDRLYASVGVY F >gi|197283014|gb|ABQU01000036.1| GENE 4 5733 - 6176 360 147 aa, chain - ## HITS:1 COG:no KEGG:Abu_2218 NR:ns ## KEGG: Abu_2218 # Name: not_defined # Def: hypothetical protein # Organism: A.butzleri # Pathway: not_defined # 1 146 209 357 357 65 26.0 8e-10 FQTREELENSNKPYHLIKRKIQCYRLLKGILAQDSQSIPSFICSYSMLNKPTKAKIEFWE NGVGYASKEGILFLEFETFKEFLDKKDFESLIKEGLDESIQLALRQKLYPQGFLTSPILI IKNKIYGDFTLEIQYILQEEMIEDFIS Prediction of potential genes in microbial genomes Time: Tue May 24 02:19:55 2011 Seq name: gi|197283013|gb|ABQU01000037.1| Helicobacter pullorum MIT 98-5489 cont2.37, whole genome shotgun sequence Length of sequence - 4307 bp Number of predicted genes - 7, with homology - 6 Number of transcription units - 2, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 665 542 ## COG1636 Uncharacterized protein conserved in bacteria 2 1 Op 2 . - CDS 707 - 802 72 ## 3 1 Op 3 . - CDS 795 - 1835 790 ## COG0820 Predicted Fe-S-cluster redox enzyme 4 1 Op 4 . - CDS 1828 - 2370 297 ## WS0063 hypothetical protein 5 1 Op 5 . - CDS 2380 - 2631 275 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) - Prom 2697 - 2756 9.3 + Prom 2661 - 2720 4.0 6 2 Op 1 . + CDS 2753 - 3976 1491 ## COG0137 Argininosuccinate synthase 7 2 Op 2 . + CDS 4041 - 4305 195 ## COG0817 Holliday junction resolvasome, endonuclease subunit Predicted protein(s) >gi|197283013|gb|ABQU01000037.1| GENE 1 2 - 665 542 221 aa, chain - ## HITS:1 COG:aq_701 KEGG:ns NR:ns ## COG: aq_701 COG1636 # Protein_GI_number: 15606102 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Aquifex aeolicus # 11 192 3 184 413 203 51.0 2e-52 MSQIPYDFRDKNTTLVHICCSVDSHHFLIQLQKLYPQKSFCGFFYNPNIHPYEEYQMRLK DVQRSCEMLGIPLIVGEYDLDSWLCGTKGLEDAPEKGERCSYCFDYRLEKSAKIAKETNC IEFTTTLLASPMKSQNELFAQGKTIAQRHQLAFLPIDVRSNGGTKIQNELAKEANLYRQN YCGCFFALTKQREKSHKTPLELVSTLTLPKDSRNIPSLRLK >gi|197283013|gb|ABQU01000037.1| GENE 2 707 - 802 72 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSNLDIVLLVFLVVVFVVGMGAFLYYAYKNN >gi|197283013|gb|ABQU01000037.1| GENE 3 795 - 1835 790 346 aa, chain - ## HITS:1 COG:Cj1713 KEGG:ns NR:ns ## COG: Cj1713 COG0820 # Protein_GI_number: 15793016 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Campylobacter jejuni # 5 341 6 352 356 417 62.0 1e-116 MDKKNIFGLTLEELTQSLNGFPKFRAKQIYHWLYVRYENNFDKMENLPKNLREFLKQDFT GDLVSIAKKEQSSDGSVKYLFRTADNLTYEAVFLKMKEDKFTLCLSSQIGCKVGCSFCLT AKGGFVRNLSAGEMVYQVFAIKKDQNIPSNKAVNIVYMGMGEPLDNLENVSKCIQILSEL DGLSISRRRQTISTSGIAPKIKKLGALNLGVQLAISLHAVDDELRTKLMPINKAYNIQSV IDEVAIFPIDTRKRVMFEYLMIDEVNDSLECAKKLVALLNKIKAKVNLIYFNPHEGSPYK RPNKEKVEAFREFLLKKGLLCTIRESKGLDISAACGQLREKELASE >gi|197283013|gb|ABQU01000037.1| GENE 4 1828 - 2370 297 180 aa, chain - ## HITS:1 COG:no KEGG:WS0063 NR:ns ## KEGG: WS0063 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 177 1 177 182 189 50.0 3e-47 MICCAGKIENFSFAKSIGVGLIESAINLTQCIFYEKPSEIVFVGTCGCYDDSKPLLEIFE SQSATNIELSFLQNNSYTPLDNCISLENVSHETLTKNIVNSSNYITTNKELAQKFIKLRI LYENMEFFSVLQVARTYQIPALGVFCSTNHIHKEAQKEFFSNHKIAMNKLEEYIRDKKNG >gi|197283013|gb|ABQU01000037.1| GENE 5 2380 - 2631 275 83 aa, chain - ## HITS:1 COG:Cj0667 KEGG:ns NR:ns ## COG: Cj0667 COG1188 # Protein_GI_number: 15792021 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Campylobacter jejuni # 1 77 1 77 81 75 53.0 3e-14 MRIDKFLNAVNITKRRTIAQDMIENGVVKISGISVKASRDVKVGDVIEIAFLEKPRFFEV LQIPTQKTIKKNESHLYYKEIIK >gi|197283013|gb|ABQU01000037.1| GENE 6 2753 - 3976 1491 407 aa, chain + ## HITS:1 COG:Cj0665c KEGG:ns NR:ns ## COG: Cj0665c COG0137 # Protein_GI_number: 15792020 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate synthase # Organism: Campylobacter jejuni # 9 407 5 404 406 636 77.0 0 MSQENAKNIKKVVLAYSGGLDTSVILKWLGDTYGCEVVTFTADIGQGEEVEPAREKALKL GIKPQNIFIEDLREEFIRDFVFPMFRANTIYEGEYLLGTSIARPLIAKRLVEIAKEVGAD AIAHGATGKGNDQVRFEIGAYALNPDIKVIAPWREWELNSREKLLSYAESAGIAIEKKQN KSPYSMDANLLHISYEGQILEDPNVAPEEDMWRWSVSPKNAPDTPTIITITFEKGDGVAI NGENLSPAAFWAKLNELGGANGIGRLDLVENRYVGMKSRGCYETPGGTIYLKAHRAIESL CLDREEAHLKDSLMPKYAELIYNGYWFSPEREALQALIDKTQEKVSGNVRLELYKGNVTV LGRESKNSLFNAAYSTFEEDSVYNQKDAAGFIKLNALRFIIAGKAKR >gi|197283013|gb|ABQU01000037.1| GENE 7 4041 - 4305 195 88 aa, chain + ## HITS:1 COG:Cj1731c KEGG:ns NR:ns ## COG: Cj1731c COG0817 # Protein_GI_number: 15793033 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, endonuclease subunit # Organism: Campylobacter jejuni # 1 88 3 90 160 124 68.0 4e-29 MNILGIDPGSRNCGYAIVQIENNSLKLLEAGLIKIHERILQYQILEFVEGIDLVLKSHKI DSVAIEDIFYAYNPKTVIKLAQFRGALS Prediction of potential genes in microbial genomes Time: Tue May 24 02:20:05 2011 Seq name: gi|197283012|gb|ABQU01000038.1| Helicobacter pullorum MIT 98-5489 cont2.38, whole genome shotgun sequence Length of sequence - 11394 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 7, operones - 4 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 204 151 ## COG0817 Holliday junction resolvasome, endonuclease subunit 2 1 Op 2 . + CDS 220 - 852 499 ## COG1351 Predicted alternative thymidylate synthase 3 1 Op 3 . + CDS 852 - 1499 530 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Prom 1521 - 1580 9.1 4 2 Op 1 . + CDS 1632 - 2033 656 ## Cla_1502 hypothetical protein 5 2 Op 2 . + CDS 2108 - 3400 1047 ## COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase + Prom 3418 - 3477 11.8 6 3 Tu 1 . + CDS 3514 - 4722 1148 ## COG0786 Na+/glutamate symporter + Term 4723 - 4781 13.2 7 4 Tu 1 . + CDS 5176 - 5643 447 ## PROTEIN SUPPORTED gi|148994988|ref|ZP_01823966.1| ribosomal protein L11 methyltransferase 8 5 Op 1 3/0.000 - CDS 5646 - 6005 336 ## COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase 9 5 Op 2 . - CDS 6007 - 7284 1244 ## COG0460 Homoserine dehydrogenase 10 5 Op 3 . - CDS 7363 - 7686 287 ## gi|242310250|ref|ZP_04809405.1| predicted protein - Prom 7930 - 7989 8.1 + Prom 7755 - 7814 7.0 11 6 Op 1 . + CDS 7842 - 8693 693 ## WS2057 ATP phosphoribosyltransferase regulatory subunit 12 6 Op 2 . + CDS 8690 - 9940 1579 ## COG0104 Adenylosuccinate synthase 13 6 Op 3 . + CDS 9937 - 10362 435 ## HH0953 hypothetical protein 14 6 Op 4 . + CDS 10362 - 10970 630 ## COG3334 Uncharacterized conserved protein - Term 10815 - 10857 1.4 15 7 Tu 1 . - CDS 11055 - 11291 249 ## CCC13826_1370 HmcD domain-containing protein - Prom 11318 - 11377 5.3 Predicted protein(s) >gi|197283012|gb|ABQU01000038.1| GENE 1 1 - 204 151 67 aa, chain + ## HITS:1 COG:HP0877 KEGG:ns NR:ns ## COG: HP0877 COG0817 # Protein_GI_number: 15645496 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, endonuclease subunit # Organism: Helicobacter pylori 26695 # 1 66 92 157 157 108 83.0 2e-24 LQELGNFTEYTPLQVKKALTGNGKAQKEQVAFMVKRLLGIKGEIKPLDITDAIAIAITHA QRLKLQK >gi|197283012|gb|ABQU01000038.1| GENE 2 220 - 852 499 210 aa, chain + ## HITS:1 COG:Cj0026c KEGG:ns NR:ns ## COG: Cj0026c COG1351 # Protein_GI_number: 15791425 # Func_class: F Nucleotide transport and metabolism # Function: Predicted alternative thymidylate synthase # Organism: Campylobacter jejuni # 1 208 1 205 207 275 70.0 5e-74 MQITLLHYTDLKICSHAIRTCWQSFEKGDNGGEKDKELIDRVGNKYKHASTLEHLNYTFY IQGISRACLQELARHRIASLSVKSSRYTLKELKNTESFLPLDEKNLKRAEEFLVFTENRL VNEASIRALENLRLLLQENISNDLAKFAMPESYKTELTWSINARNLQNFLHLRSSKSALW EIRNLALAIFDAIPKEHQFIFVDLISKEKM >gi|197283012|gb|ABQU01000038.1| GENE 3 852 - 1499 530 215 aa, chain + ## HITS:1 COG:STM3193 KEGG:ns NR:ns ## COG: STM3193 COG0526 # Protein_GI_number: 16766493 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Salmonella typhimurium LT2 # 14 215 19 223 223 128 29.0 9e-30 MKFLKLCLIGFCLVATQLVANGLQEGKDYILLDKPIANMDNTVLEIYNIGCPHCAYYNEN FLPNLLEFLPENVEFLPYHIAAPIEIHQEMSKILVVALSKDKQNKTSTKSPNALYKKVLN HYFDAIHKEKRNWKNPQDFASKGLEIIGIDEVEYQKILETKETKEMLQKWQSLIEYANIQ GVPSFIVNGKYMVSSQNLKGTEDFIYKIDYLLEKK >gi|197283012|gb|ABQU01000038.1| GENE 4 1632 - 2033 656 133 aa, chain + ## HITS:1 COG:no KEGG:Cla_1502 NR:ns ## KEGG: Cla_1502 # Name: not_defined # Def: hypothetical protein # Organism: C.lari # Pathway: not_defined # 16 133 14 120 120 69 44.0 4e-11 MKTLKLLGALSLAALFSTAAMADYDFDVQGQISAVNDKDKTITLAGPGGQLVIKVLPYTE IKGDDCGAFGQDVYGSFKDLTPGKYVKVEAVPYGGYNAYNANNTQAIDPATGLPKDGQLT AKEIEWKCFPKAY >gi|197283012|gb|ABQU01000038.1| GENE 5 2108 - 3400 1047 430 aa, chain + ## HITS:1 COG:Cj0307 KEGG:ns NR:ns ## COG: Cj0307 COG0161 # Protein_GI_number: 15791675 # Func_class: H Coenzyme transport and metabolism # Function: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase # Organism: Campylobacter jejuni # 1 428 1 427 427 553 60.0 1e-157 MDLQTLIQQDLKYIWHPCTQMQDHEKNIPLIPIKSAKGIYLYDFDNKKYIDCVSSWWVNL FGHCNPYINQKLKEQLESLEHIIFAGFTHKPIVELSKRLVGLLDSRLCKCFYADNGSSAI EVALKMAFHANVIKGKKKNKFLCLENAYHGETIGALSVGDVGIYTEVYQPILLETLKVKA PCGEDIEESLQELKKIIASKKDEIAAFVLEPLIQCAGNMNMYSSEFVKEATKVCQENGIY AIFDEIAVGFGRSGSMFAYQQCGVVPDFLCLSKGITGGYLPLSVVVTKEEIYQLFYAPYY ENKSFLHSHSYTGNALACACANAVLDIFETENVCEKNKILSEFIWKKMQILGEFAFVKNL RHCGMVFAFDLVGFEGQRKGLEVFNAGLKKGLLLRPLGNTIYFMPPYIITQEQVCFLIDS LKEILEKFRV >gi|197283012|gb|ABQU01000038.1| GENE 6 3514 - 4722 1148 402 aa, chain + ## HITS:1 COG:HP1506 KEGG:ns NR:ns ## COG: HP1506 COG0786 # Protein_GI_number: 15646115 # Func_class: E Amino acid transport and metabolism # Function: Na+/glutamate symporter # Organism: Helicobacter pylori 26695 # 2 402 3 406 408 470 62.0 1e-132 MEISLNFYATLTALVGVLLLGRWIISRSNFLKDYNIPEPVVGGIIAAIVIFCLLKWGGIK FQFDNSLKDPLMLAFYASIGLSADFASFKKGGKILFGFLFIVTGLLILQNIAGIIAAKIM GVNPLIGLLGGSITMSGGHGTGAAWADVFKEAPYNFTAAMEVAMACATFGLIAGGIIGGP VAHYLVKKYKLKLPNAHLQDDTEVAFEKPEKERLITATSFIESLALIAISLLIGTMVAKL FQGSSFTMPTFVWCLLVGAILRNILQATKIHQVFDREVAVLGNVSLSLFLAFSLMAINLV ELVSLALPMVIILLIQVIIMIFYAIFVTFRFCGKDYDAAVLAAGHCGFGLGATPTAMVNM QTVTQHYGPSHMAFIVVPLVGAFFIDLINAFVISGIIKLPFF >gi|197283012|gb|ABQU01000038.1| GENE 7 5176 - 5643 447 155 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148994988|ref|ZP_01823966.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae SP9-BS68] # 48 155 7 114 114 176 75 5e-44 MELKQLGKQIEYTFDYNKKLLETFENKHSNRDYFVKFNCPEFTSLCPITGQPDFATIYIS YIPNIKMVESKSLKLYLFSFRNHGGFHEDCVNTILNDLVELMEPRYIEVWGKFTPRGGIS IDPYVNYGIPNTQYEEMARYRLLNHDLYPEKIDNR >gi|197283012|gb|ABQU01000038.1| GENE 8 5646 - 6005 336 119 aa, chain - ## HITS:1 COG:HP0823 KEGG:ns NR:ns ## COG: HP0823 COG0792 # Protein_GI_number: 15645442 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease distantly related to archaeal Holliday junction resolvase # Organism: Helicobacter pylori 26695 # 6 117 10 114 114 92 44.0 2e-19 MKNTTQKGKEAETFACEFLMQNGFGIIQRNYFTPFGEIDIIAKKDKILHFIEVKSGIGFE PVFNITKTKLERIIKSVEMYLKLEGSKDSYCLSALILSKQNTQDSTFDVQWLENLTLFS >gi|197283012|gb|ABQU01000038.1| GENE 9 6007 - 7284 1244 425 aa, chain - ## HITS:1 COG:HP0822 KEGG:ns NR:ns ## COG: HP0822 COG0460 # Protein_GI_number: 15645441 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Helicobacter pylori 26695 # 1 423 1 420 421 486 61.0 1e-137 MKKQLNIGIIGLGVVGSSVARILKNNQELIAARAGCNIIIKKGVVRNISKVRDIFDFPIT NEVESILEDPEIDIVVELAGGIKEPFEIAKKALYNSKAFITANKAMLAYHRYDLQKIAGD LPIGFEASVAGGIPIIKALRDGLGANHILSICGIINGTCNYILTQMKECGVSFEEALKEA QKLGYAESDPSFDIGGFDAAHKLLILASIAYGIDAKPEDILIEGITNITQEDIEFAKEFG YNLKLLGIAKKDKESVELRIHPTFLPQQAMIGKVDGVMNAISVVGDSVGETLFYGAGAGG DATASAVISDIIEIARTKSSPMLGFKTSIEKNLKLKPIAEIQSAYYLRIIVLDKPGVLAQ ITTILGEEEISIDTFLQRKSNNKNCSVLLLSTHICTESKIQTALEKINNLEITQEKPIMI RIEKN >gi|197283012|gb|ABQU01000038.1| GENE 10 7363 - 7686 287 107 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310250|ref|ZP_04809405.1| ## NR: gi|242310250|ref|ZP_04809405.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 107 1 107 107 154 100.0 1e-36 MAFKINTQATLNPPTPSKPKPQESTPPQTPTSMPNTQTPTKSPIGNLSSTLPPSSNSAFS SLFLSQKEWLDKEFGINEETFGEIQDLLEESKQERYLADFLWNFKKI >gi|197283012|gb|ABQU01000038.1| GENE 11 7842 - 8693 693 283 aa, chain + ## HITS:1 COG:no KEGG:WS2057 NR:ns ## KEGG: WS2057 # Name: hisZ # Def: ATP phosphoribosyltransferase regulatory subunit # Organism: W.succinogenes # Pathway: not_defined # 1 283 3 285 286 286 48.0 4e-76 MILSHEIPQDSKLYFGKSAKIKRDFENLVSKTFYENGYEEILTPSFTYLQHQRDTQSREF VRISNPSNHQIALRNDSTIDAIRLLAPHLKENAIKKKWFYIQPIFVYPTKEIHQIGAENL EERDILPFIEMSLSVLCEIQIKPLLQLSNVKIPKICAKEFGIPLEVFEKNEVGTIQSANA FLSELLEVQDEQSLKAVLEKSPKCLQEELEKLLDLAKQIDYQNKILAPFFYSPMSYYSGM LFRFFLENQTMILGGEYEILEQKACGFGFYTDAIILHLMKEGK >gi|197283012|gb|ABQU01000038.1| GENE 12 8690 - 9940 1579 416 aa, chain + ## HITS:1 COG:Cj1498c KEGG:ns NR:ns ## COG: Cj1498c COG0104 # Protein_GI_number: 15792813 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Campylobacter jejuni # 3 413 2 414 416 498 57.0 1e-141 MNTKADLIVGIQWGDEGKGKMVDLLAQNYDYVVRYQGGHNAGHTIVVEGKKYALHLIPSG ILYPKCKNIIGNGVVISPSALIEEMQQFSELEGRLFISTKAHLILPYHEFLDKLSEKRAK KAIGTTGKGIGPAYTDKIARKGFRVGDLRDTQSLCEKILELMEEKDIINLGGEIPTKEAL KATLDSYAQALLPFIANTTDMLWKAMDRGEKILCEGAQGSMLDIDHGTYPFVTSSTTTAS GACSGTGISPRELGDVIGITKAYCTRVGNGPFVTEEEGEIGETLRQKGGEFGVTTGRARR CGWLDAVAVKYACRLNGVNALAMMKLDVLDGFDEVKVCVQYQDKNGNVLESFPFDFEGIC PIYKTFKGWDKTAGIREFDALPKEAQEYILELEKFIGVKFTMISTSPDRNDTIFRS >gi|197283012|gb|ABQU01000038.1| GENE 13 9937 - 10362 435 141 aa, chain + ## HITS:1 COG:no KEGG:HH0953 NR:ns ## KEGG: HH0953 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 136 1 136 142 75 38.0 6e-13 MKTKFTQLVVLRKKKVDEAELMLQKNAQKIIDKQAEIDALIREFATLEEPKNGVYQAFLT FVHHKNEYRETIDFKMGELALLKKQKQELQEYFKMQNVEYEKAKYLDGLEVKKILDKIRR QESKDLDEISVMLYANHHKEQ >gi|197283012|gb|ABQU01000038.1| GENE 14 10362 - 10970 630 202 aa, chain + ## HITS:1 COG:jhp0241 KEGG:ns NR:ns ## COG: jhp0241 COG3334 # Protein_GI_number: 15611311 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Helicobacter pylori J99 # 1 177 1 187 222 96 39.0 4e-20 MKKILFLSFCFSGFLLFAQERQIVDCNIIFEQRKQEILKEIEKIDEQQQALQALQQATQS VLDQKDADLKKREAALNEEKKAIEQKEANIQALLKKNEEILKEIKDATQSKLGATYASMK DSKSAAILENLPESEAARILFSLDTKVVSKILAKMDPQKAASLTQIIQKGPPFETQEIIQ TNMQNNPQNIPVNADSNSTSSM >gi|197283012|gb|ABQU01000038.1| GENE 15 11055 - 11291 249 78 aa, chain - ## HITS:1 COG:no KEGG:CCC13826_1370 NR:ns ## KEGG: CCC13826_1370 # Name: not_defined # Def: HmcD domain-containing protein # Organism: C.concisus # Pathway: not_defined # 1 78 207 284 284 90 58.0 1e-17 MSIILSSKISLDVGLEQRYQSGSKFEGRKTSNSYSIPTFSLGATYSLNSDTAISVSGTAG GSSSAPDSVFTISLWKKF Prediction of potential genes in microbial genomes Time: Tue May 24 02:20:30 2011 Seq name: gi|197283011|gb|ABQU01000039.1| Helicobacter pullorum MIT 98-5489 cont2.39, whole genome shotgun sequence Length of sequence - 22153 bp Number of predicted genes - 24, with homology - 24 Number of transcription units - 10, operones - 8 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 1120 1040 ## gi|242308805|ref|ZP_04807960.1| predicted protein 2 1 Op 2 . - CDS 1170 - 1676 681 ## gi|242310256|ref|ZP_04809411.1| predicted protein - Prom 1703 - 1762 9.2 + Prom 1717 - 1776 10.4 3 2 Tu 1 . + CDS 1861 - 2667 931 ## COG0500 SAM-dependent methyltransferases - Term 2655 - 2680 -0.5 4 3 Op 1 12/0.000 - CDS 2688 - 3002 310 ## COG2076 Membrane transporters of cations and cationic drugs 5 3 Op 2 . - CDS 2999 - 3430 497 ## COG2076 Membrane transporters of cations and cationic drugs - Prom 3608 - 3667 5.8 6 4 Tu 1 . - CDS 3688 - 3915 288 ## gi|242310260|ref|ZP_04809415.1| conserved hypothetical protein - Prom 4021 - 4080 5.9 7 5 Op 1 5/0.000 - CDS 4174 - 6114 1884 ## COG2217 Cation transport ATPase 8 5 Op 2 . - CDS 6124 - 6465 421 ## COG0640 Predicted transcriptional regulators - Prom 6607 - 6666 8.4 + Prom 6477 - 6536 5.1 9 6 Op 1 . + CDS 6633 - 7547 1160 ## CJE0666 hypothetical protein 10 6 Op 2 . + CDS 7557 - 8345 645 ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 - Term 8652 - 8686 -0.4 11 7 Op 1 1/0.333 - CDS 8713 - 10944 1826 ## COG1629 Outer membrane receptor proteins, mostly Fe transport - Prom 10967 - 11026 3.6 - Term 10957 - 11008 6.1 12 7 Op 2 . - CDS 11029 - 11784 695 ## COG0748 Putative heme iron utilization protein - Prom 11810 - 11869 7.3 13 8 Op 1 . - CDS 11879 - 12325 327 ## gi|242310268|ref|ZP_04809423.1| predicted protein 14 8 Op 2 5/0.000 - CDS 12327 - 12884 717 ## COG0279 Phosphoheptose isomerase 15 8 Op 3 4/0.000 - CDS 12887 - 14407 1459 ## COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase 16 8 Op 4 . - CDS 14408 - 15409 1003 ## COG0451 Nucleoside-diphosphate-sugar epimerases - Prom 15435 - 15494 9.1 + Prom 15459 - 15518 9.4 17 9 Op 1 . + CDS 15549 - 16373 816 ## COG1639 Predicted signal transduction protein 18 9 Op 2 3/0.000 + CDS 16375 - 18525 559 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 19 9 Op 3 2/0.000 + CDS 18353 - 19522 1046 ## COG1466 DNA polymerase III, delta subunit + Prom 19524 - 19583 5.4 20 9 Op 4 24/0.000 + CDS 19603 - 20040 734 ## PROTEIN SUPPORTED gi|239523572|gb|EEQ63438.1| 30S ribosomal protein S6 21 9 Op 5 21/0.000 + CDS 20055 - 20546 664 ## COG0629 Single-stranded DNA-binding protein 22 9 Op 6 . + CDS 20557 - 20814 440 ## PROTEIN SUPPORTED gi|239523574|gb|EEQ63440.1| 30S ribosomal protein S18 + Term 20840 - 20873 1.5 + Prom 20848 - 20907 3.4 23 10 Op 1 . + CDS 20946 - 21494 473 ## COG1738 Uncharacterized conserved protein 24 10 Op 2 . + CDS 21491 - 22051 389 ## COG0241 Histidinol phosphatase and related phosphatases Predicted protein(s) >gi|197283011|gb|ABQU01000039.1| GENE 1 1 - 1120 1040 373 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308805|ref|ZP_04807960.1| ## NR: gi|242308805|ref|ZP_04807960.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 32 373 14 340 365 80 30.0 1e-13 MQILNYSNYPYYNFNSKEFSNLANQDSKLENNFLVNLNSSNSTSYKEIQESNTQIETQSD EEILNKAQKNISYFHDTWSKTIKNEFEPLPYSFHTTIDMHNMNFIDTINSKLQSGANIKI TQQEMQEAQDFLNEQMDNLMLKFYKANPEIVEDTLKGDFIFYSEGGLNRTMNVDDIEISR DYPELKYDKKVSSILYAYGARIEQDSLDKDFMGYLQNFKNALNNQDLDDTINIKHVMSSY RHYKMESTGYSFFASLSDMLSPIEQEKITDSIAKVMGFYLQSNSMEINGIKVSWDNSGFT SDIGYYDSVFGGRSMALHTYKIDYADSQSTPNDFLASLASNFDTTQSIFDILNQKEKLEK ENQDLKNKQAIEA >gi|197283011|gb|ABQU01000039.1| GENE 2 1170 - 1676 681 168 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310256|ref|ZP_04809411.1| ## NR: gi|242310256|ref|ZP_04809411.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 9 168 11 170 170 259 100.0 3e-68 MKKLLLTLSVIAGLLSNAFAIDLISLATNGKSNENSLGVKTLNNQEMSKIIGGAYIYGKP VYQYGVKNNSNTKIYYTAYYNFQTTTTQDEVAYGRLNTGGSPYVPVVSATLNYLTNKVSV SIIGMNQNNPVYTRPADSYYANQLINSNGKELFNSVNNKIRGDAGKYW >gi|197283011|gb|ABQU01000039.1| GENE 3 1861 - 2667 931 268 aa, chain + ## HITS:1 COG:MT3029 KEGG:ns NR:ns ## COG: MT3029 COG0500 # Protein_GI_number: 15842504 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Mycobacterium tuberculosis CDC1551 # 44 263 110 304 324 67 27.0 3e-11 MIHIQRPLPFILASTNIGTMIVNYLDKCETPNGAYGVGYQFLQTGSFDFYEVESVVALLN LRRQYFGDGVVALDCGANIGAHSVTWGIAMTHFGRVIAFEAQERIYYALAGNIAINNCFN VRAIFAALGNPSNKRGGGGFLDIPQVDYTKPASFGSLELKANINNEFIGQNIDYQKTQKV PLMSIDSLELERVDFVKIDVERMEVEVLNGAMKTLKKYKPILLIEVLKSPQQEIFDLIKP LGYEIFPMGMNILAVFKDDPVLKHINQK >gi|197283011|gb|ABQU01000039.1| GENE 4 2688 - 3002 310 104 aa, chain - ## HITS:1 COG:Cj0309c KEGG:ns NR:ns ## COG: Cj0309c COG2076 # Protein_GI_number: 15791677 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Campylobacter jejuni # 1 104 1 104 104 89 51.0 1e-18 MSWIYLILAGIMEIFGVICMKKFALSNQKIYLLGSAALFVLSLSLLSLALREIPMGIGYA IWTGIGTAGGVLVGIFIYKESKSFWKLFFVASIVVCSVGLKALN >gi|197283011|gb|ABQU01000039.1| GENE 5 2999 - 3430 497 143 aa, chain - ## HITS:1 COG:Cj0310c KEGG:ns NR:ns ## COG: Cj0310c COG2076 # Protein_GI_number: 15791678 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Campylobacter jejuni # 1 82 7 88 112 82 52.0 2e-16 MKLGWFCVILGGILEIFWVSGLKYSTSLLAYIITGILVFCSFSLMIIATKKIEVSIAYAV FVGIGAAGVALSEIVVFGASTSPLQLTFIALLILSVIGLKLASKENDKQELKVIQEFSHD LGIDTIAQKLETLESTQTKKDSK >gi|197283011|gb|ABQU01000039.1| GENE 6 3688 - 3915 288 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310260|ref|ZP_04809415.1| ## NR: gi|242310260|ref|ZP_04809415.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] # 1 75 1 75 75 104 100.0 2e-21 MIPKRFYRLVFAGIMSLFMSFIMSGIITFLNLGFIPSFFAQWLLEAFPKAWVAAFPIVFF VAPRAAKLAESLMKK >gi|197283011|gb|ABQU01000039.1| GENE 7 4174 - 6114 1884 646 aa, chain - ## HITS:1 COG:PAB0626 KEGG:ns NR:ns ## COG: PAB0626 COG2217 # Protein_GI_number: 14521140 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Pyrococcus abyssi # 27 646 82 689 689 499 41.0 1e-141 MANCCSTCSNGQNNTQTPTNEKLTQGIFYLSIIIYLFALTEDFEIFGKHLETFMLNSLYL FCYFVLGYEILKEAFIGFYKKEFFNENSLMALASVGAWAIGEGAEAVAILLFYRIGEALE SLIVEKSKKSIRTLASIKIEQAHLLKGDKTENIDPKTIQKDDILVIFAGERIPADGIVIK GEGSIDNSALNGESIPQNIKVGDSLLSGGINLDGILHLKATKSYENSAFSKIIKLIEEGN TQKSKSEEFITKFARYYTPIVTLLAISVVIFPTLYFWAMGADFVESFKTWLYRGIIFLVV SCPCALVISIPLTFFAALGRASKEGILIKGSSYIESLKDANAIIFDKTGTLTKGELIIKE INAYKNYDKNSILKIAKSLESHSNHPIAKAIIQQTNGQNLQKLHLENLKESAGGGISATF ENKTIALGNARFIESITQKPIQEDSIAKCQIFIAFDGEIIGNIILEDAIKEEAKEVINTL KKEHLEELYILSGDKKSVVEQVANAIGITHFFAELMPKDKVTHLKEILASQKAQRKKVIF VGDGINDAPSLALCDIGIAMGKAGSDVALEGADIVIMNDDLNKIPKVLQIAKKTRAILWQ NIIFALGVKAGIMILGAFGATNLWIALFGDVGVAILALLNAIRAIR >gi|197283011|gb|ABQU01000039.1| GENE 8 6124 - 6465 421 113 aa, chain - ## HITS:1 COG:CAC2242 KEGG:ns NR:ns ## COG: CAC2242 COG0640 # Protein_GI_number: 15895510 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 11 112 20 121 122 111 56.0 3e-25 MAEFDEKRSKTLEEILKKLPKEELLYELAELFKIFGDSSRIRILSLLQKERLCVSEISTL LNLSQSAISHQLRILRQARLVRYKKIGKEVFYELDDDHIEKIFEQGLEHIQEM >gi|197283011|gb|ABQU01000039.1| GENE 9 6633 - 7547 1160 304 aa, chain + ## HITS:1 COG:no KEGG:CJE0666 NR:ns ## KEGG: CJE0666 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_RM1221 # Pathway: not_defined # 19 304 24 309 309 186 39.0 9e-46 MIKIALTLAMCGSLVLAAESGFSGNISLGGGFKKGESNIDPSLDENRLNSLNDKNNSTEA IPFLGIELSYKGLLSDDEVYLKNYNGRDVSGLSVGYGLNYGNNKSDIAFIGSLRQEAYAN PYQIGDREVVDRNQYGLKIEQTYHFNEKLDVFGRYVYAQDNYDKENLVQSLRREGDIHEF EVGFKYYGIEIGAYYDMKNADGSAESYDGFGIKIDGNLPILDNETFANFGLVYGNRSYDS KNIIFDKTRESDIWKAKLGISRHNIFGYKGVYAFATYLYSNVSDDIGFFDERYHIGLVGL GYRF >gi|197283011|gb|ABQU01000039.1| GENE 10 7557 - 8345 645 262 aa, chain + ## HITS:1 COG:aq_1329 KEGG:ns NR:ns ## COG: aq_1329 COG0476 # Protein_GI_number: 15606532 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Aquifex aeolicus # 5 249 6 254 271 254 52.0 1e-67 MGLDKEELERYNRNILLSGIGEEGQQKLKNAKVLVVGAGGLGSPVLFYLAAAGVGEIGIC DGDSVDLSNLQRQILHRTQDIGINKAESAKAKLEALNPNICIKIFKERLNAANALGIIGD YDLVVESTDAFVSKFLVNDACVLGGKILVRASALHFCGQAMSIKPKESACYACLFDSPPQ EEMPTGASVGILGAVAGLFGCIQANEAIKIITGVGEPLFDKFLSCDIRDMEFRKISIRRN PKCKICGENGIISLEETRYKSV >gi|197283011|gb|ABQU01000039.1| GENE 11 8713 - 10944 1826 743 aa, chain - ## HITS:1 COG:Cj1614 KEGG:ns NR:ns ## COG: Cj1614 COG1629 # Protein_GI_number: 15792919 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Campylobacter jejuni # 28 743 24 709 709 354 34.0 3e-97 MKNLPTLTGLFTLSLALLNAQETQSIQQESNKQDEKVLLETAVVSAPIMRFSLDELNRNM VIIDKEAINDKGYKNLEDVFRTLPFVNLTDVGLGKNIDLRGQGDKANTSVQVLVNGIPQN MLDSSHGVTPLNTIDINSIERIEILPGGGAVMYGNGTRGGVVNIITQRRYEKPTFNANIG YSNVLEGNGNSYNVDFKYGNKTNENLYYSFGANYQNKGGPRYGDKIEGVGANLSLTKDIG QSQSVFFDFDIFRGDIDSSPNNSFLDNPNPSKNDRKTPGNGDFHNRQLRFDASLGYQNEL SPTANLIAKIFYHYNKIDYLDTKTYISNYTLQMAGMPFGFSFPNTLADQSGSFFDDQKIG LDIKYDQKHNNGLLILGAQSTYNISKRTMDNYIYARNPNLVMPMPPMPMPMDLVYTNGML IPFEGKKWSNSLYALEKYDFTDRFSLMGGVRYEYDKYDVDVDYNMHTHDILLNGNRLPFV NPTHAQGSLNEDSHNFAFEINPNYKYSNYGNIYAKYERGFISPSPNSLLQRQGTTYQTTN IKDETYNTFEIGIRDFWWDTFLFSLTGYYTLTNDEFYTIGTAHSISGVEYGNYDKTERVG FELFLEQYFLDNALTLTESLSYTDAKIKKQNGQSTSQRIPYVSKYKATLGLNYKFLKDYT LWINNTFYGNQVDTIQSKIQSYSLTDIGITAKYKEFLISAGVKNLFDKFYYSFYNSDSSD VITGYSYLIGQGRTFFISAKYSF >gi|197283011|gb|ABQU01000039.1| GENE 12 11029 - 11784 695 251 aa, chain - ## HITS:1 COG:Cj1613c KEGG:ns NR:ns ## COG: Cj1613c COG0748 # Protein_GI_number: 15792918 # Func_class: P Inorganic ion transport and metabolism # Function: Putative heme iron utilization protein # Organism: Campylobacter jejuni # 1 251 1 251 251 271 53.0 1e-72 MDFSKILEHLNNHHQDNLKDLCKKFGNANTISNVQATKVDFEGITLCYNENKTLKIDFEK KADEKTLKDTIVQLCLSVKSSLDTQAIKEELEEFMRGFKSICIASIAPNGTAVCSYAPLI QTNGKYYIYISEVSEHFSSIHTNPNKIEIMFLQDEKEAPLIILRKRARFKSEATFIPRGE EFDRIYDAFEAQNEHNGPLKTIRKMLDFHLIELHLKTGRFVKGFGQAYDIIDGEIIPLTE NNPHTKSPHNH >gi|197283011|gb|ABQU01000039.1| GENE 13 11879 - 12325 327 148 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310268|ref|ZP_04809423.1| ## NR: gi|242310268|ref|ZP_04809423.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 148 1 148 148 283 100.0 3e-75 MFFQKTIESCQQFHFNLKSTLLDTLKTSGISANLADLNPTKEGIYFTFPDKTSTKVMLYQ AKIQESLFRTQGDPLVHLCACKESLKHYNNPEFLAIIRPNMQFFISIYSHKIQTRFFNEK PLDICPECLYNLGNLFDKNLELFLDCSL >gi|197283011|gb|ABQU01000039.1| GENE 14 12327 - 12884 717 185 aa, chain - ## HITS:1 COG:HP0857 KEGG:ns NR:ns ## COG: HP0857 COG0279 # Protein_GI_number: 15645476 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoheptose isomerase # Organism: Helicobacter pylori 26695 # 4 183 6 186 192 211 62.0 5e-55 MQHILDEINAHIQTAQKMPELAQTIQKAALLAIQTLKNGNKILICGNGGSAADAQHIAAE LTGRYKRERRGLSAIALTTDTSALTAIGNDYGYDFVFSRQFEALAQKGDLLWGISTSGNS TNVLNALKLAKKMECNTLGFSGRNGGEMKEWCDILLISPSEDTPRIQEMHILMAHIICDL IEKEA >gi|197283011|gb|ABQU01000039.1| GENE 15 12887 - 14407 1459 506 aa, chain - ## HITS:1 COG:jhp0792 KEGG:ns NR:ns ## COG: jhp0792 COG2870 # Protein_GI_number: 15611859 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase # Organism: Helicobacter pylori J99 # 5 505 4 459 463 419 49.0 1e-117 MKPSILVIGDLILDHYIWGQCERISPEAPVQVIEVAKETLNLGGACNVANNLVALECEVF ICGMVGKDEAGTKLKETLESLHIHTQGIYYNLNRPTTQKSRIIAAHQQVIRVDREDKSPI SQEGEEFILNFSKTLIESHKIDCIILSDYQKGVLSENLTQNLIKIAKDSKLKILIDPKGK DYSKYKGATLLTPNKKEAKEATGIQILDDSTLLLALQNLKKSCNLEYSLITLSEDGIGIL DDKLHKLPTIAKEVFDVTGAGDTVIAALAFMLAQNEDILSSIQFANAAAAVVVGKIGSAV ATKQEIFSYLQDNHLLDTLSLEFFKVFKENPNTQFLPHLQRISQKQKPIAPSSKLINQNA FSSFLEFLGTLKQQDFKIVFTNGCFDILHFGHISYLNQARALGDLLIVGLNSDNSIKRLK GKDRPINCQEDRAALLCALECVDFVIIFDEDTPLELIKAIQPHFLAKGADYQGKEVVGSE FAKKLCLIDFVEGKSTTNTIQKIKKG >gi|197283011|gb|ABQU01000039.1| GENE 16 14408 - 15409 1003 333 aa, chain - ## HITS:1 COG:jhp0793 KEGG:ns NR:ns ## COG: jhp0793 COG0451 # Protein_GI_number: 15611860 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Helicobacter pylori J99 # 1 327 1 323 329 384 62.0 1e-107 MQYIDDTLAKKRILITGGAGFIGSNLAHYFQKYHVDAEVVIFDCFRNEETFSNGNLKSLG HFKNLLGFKGEVITGDINNKNDLERLRKQKFDYIFHQAAISDTTVMNQEMVLRSNLNAFK DLLDLCLESGAKMIYASSAGVYGNTPAPNSIGSGEIPENVYGFSKLMMDNLNYQYLQKYP NLHSVGLRYFNVYGENEFYKGKTASMILQLGLQALQNKKVRLFKMGEQKRDFVYIQDVIQ ANIKAMFAKKSGVYNVGSGVARSYNDIVSCLKQELGNFEVEYFDNPYQFFQTHTQANIIL TQEFLDYTPRFSLEIGIKNYLKQIKEIHTKGSY >gi|197283011|gb|ABQU01000039.1| GENE 17 15549 - 16373 816 274 aa, chain + ## HITS:1 COG:Cj0248 KEGG:ns NR:ns ## COG: Cj0248 COG1639 # Protein_GI_number: 15791619 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein # Organism: Campylobacter jejuni # 1 250 5 267 285 143 30.0 3e-34 MKELIIANIESLPPLSQTIVELQRICARDDVSVKEVAEVIQTDPFLTASIIKSANAPLYG YTRTVNSVAQAVAMFGVYTAKGLAIVSVVKAQLVINLTPYGLSVSNFTEAANQKGMFIGK WYKESKLLSILVTCALIMHIGMAILSDCLMKSKKGKKFSERLKTTPCIALEKEMLGVNQF EILEMLCEHWHFEPTIIKVIHSLQEERLPQEIQKYVYPLRVLNALINPFSIAAKEQIKNA RNLAINYGLDIQVFDETLLAMGFVKSLRELENYN >gi|197283011|gb|ABQU01000039.1| GENE 18 16375 - 18525 559 716 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 34 692 51 729 730 219 28 1e-56 MIEFVKILEEGIPLDAKLAPAFQKYLELLAHLNVLKIKKNKYYLLEKFRIGKVELTKAGY GFVRAFDNTGKDWLVEKNLLKGAQKGDIVLAKSLIKHQHSAKIKAKVLAVLQEKVSSVIC YLEKYKLDCIAVSIPNEVVYKINASQKSLKTLPSKTILKINPRNGEILEILGTLEDPKID EIISLNLYDKHESFSLQAEIQAQSFKEVKIKDFKERINLTNLPFCAIDPVSAKDHDDAVF YDEESSILYVAIADVSHYVTPNSPLDIEAKSRGFSIYFPHKSIPMLPRILSENLCSLQEG KTRLAMVWKIRLHKRTKAVLSSELFAAVIKVRQKLTYDEVDILFETQKSKTIKKPLHSML FALQELTQKLRKKRLQKGFDFLGDEVELELDKNLELKSLHFQPQSSSHQLIEECMLLANI QSAKLLEQKNSKNDENLKLGIYRVHQKPKQEKLSELFGELRMLGIWRGKAIPKTQESLHK AIIEIQNNAKKAKMQREVDKLIIKSMQQANYASHNLGHFGLGFEAYSHFTSPIRRYSDLI LHRILKSKITLQEDIDYKESLPMLCDNLNTQEREIMQIEWDFQDRKFARYLSKHLGQTYQ GIIINESHPILISLTDYPLMGARVVGLNGSGVKYQKALVQIIEVNLATTKVYGMVVKVYN EGFDSKNEAISQYIVAKKQNQAKIKKQRAKEEARRIASRAKRHKKQKFHKRRKRNV >gi|197283011|gb|ABQU01000039.1| GENE 19 18353 - 19522 1046 389 aa, chain + ## HITS:1 COG:HP1247 KEGG:ns NR:ns ## COG: HP1247 COG1466 # Protein_GI_number: 15645861 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Helicobacter pylori 26695 # 56 388 1 338 340 134 29.0 3e-31 MRDLILRMKRFLNTLLPKSKTKQKSKNSAQKRKQEGLLQEPKDTKSKNFTKGEREMYKKE LDTKLANNTEMRAILLYGEDSFLIGYYGDKIAQKILAKGCEKNSFYFGEFDFEAALSCFS QGSLFGDEALVWIKVDKKIPKKQLDSLIEAIEKNQSGYLILEFYQAENKSVSEYGLDCKA LAGSFRGKNIYEVRFFFANQGEAMAILREYANALCIKISDYALKKILEQQNYDLGLSVAE LRKYSIFDEEINVESIESLGYGLGSVEYEEILELLLDKKPFFKELDRFLEQGFEEVQLIA EVQRYFFQLFLFSSHIRIYGNASSEEILGYKLPPIILEKKRKRAIQINTQERFQKIFYVL NKWREEAIKGNTKGNGFFSALIKIQAILE >gi|197283011|gb|ABQU01000039.1| GENE 20 19603 - 20040 734 145 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523572|gb|EEQ63438.1| 30S ribosomal protein S6 [Helicobacter pullorum MIT 98-5489] # 1 145 1 145 145 287 100 5e-77 MRFYETMFVVKPTLTQEEIVQKIDFYKTAILNNGGEISATLDMGMRNLAYEIKKNKRGYY FVIYFKAEPKLVLELERLYRINEDILRFIVIKYDSKKEQKAWETLVDRAINNKKATPLKE PKEKAVEKEAPKAQEASEVSETQED >gi|197283011|gb|ABQU01000039.1| GENE 21 20055 - 20546 664 163 aa, chain + ## HITS:1 COG:jhp1166 KEGG:ns NR:ns ## COG: jhp1166 COG0629 # Protein_GI_number: 15612231 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Helicobacter pylori J99 # 1 163 1 181 181 165 50.0 3e-41 MFNKVILVGNLTRDVELRYLPSGAALARLNLATNRRYKKQDGTQAEEVCFIDVNLFGRTA EVANQYLKKGSQVLIEGRLVLESWTDNTGAKRTKHSITAESMQMLGQRQSTQEENHDYGA GDYNNYQEYEKPAYTASAAPKAQPVQKEPELPVIDINDDEIPF >gi|197283011|gb|ABQU01000039.1| GENE 22 20557 - 20814 440 85 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523574|gb|EEQ63440.1| 30S ribosomal protein S18 [Helicobacter pullorum MIT 98-5489] # 1 85 1 85 85 174 100 6e-43 MAEKKRYSKRYCRYTESKIEFIDYKDIDMLKHSLSERYKIMPRRLTGNSKKWQERVEVAI KRARQMALIPYIVDRKNVVENPFKI >gi|197283011|gb|ABQU01000039.1| GENE 23 20946 - 21494 473 182 aa, chain + ## HITS:1 COG:AF2110 KEGG:ns NR:ns ## COG: AF2110 COG1738 # Protein_GI_number: 11499693 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Archaeoglobus fulgidus # 35 168 59 223 241 73 35.0 1e-13 MSFGIKFISVAIFMFLIVASNYLVQFPINDFFTYGAILYPFTFLLADILAEKHSKEEVLK VVRIGIFCAFIPSMFLAEFRIALASVSAFFVSQQADIYVFYWLKSKFPKLWWLRNVGSTA FSQFVDTVVFFHIAFLFVMPWQNILMLIAGDYLIKFILAFLNTPLFYLFAIRMQNFLGIC AK >gi|197283011|gb|ABQU01000039.1| GENE 24 21491 - 22051 389 186 aa, chain + ## HITS:1 COG:jhp0794 KEGG:ns NR:ns ## COG: jhp0794 COG0241 # Protein_GI_number: 15611861 # Func_class: E Amino acid transport and metabolism # Function: Histidinol phosphatase and related phosphatases # Organism: Helicobacter pylori J99 # 4 182 6 171 174 128 40.0 5e-30 MKRKVVFFDRDDVVNLEDAPYGYKIETFYFAPYFMELFLELKKLDSLCFLVTNQSGINRG IFTQKDFEVLSAFMQNCIVSCLTIPLRQSGFVPKNIAFDGIYFCPHTKEENCTCRKPKSQ MLLQACKDFGLDLSLYESYILGDKDTDMIAGLNAGVQTRIIVGKGESQNATHRVKNLKEA LEVLIG Prediction of potential genes in microbial genomes Time: Tue May 24 02:21:18 2011 Seq name: gi|197283010|gb|ABQU01000040.1| Helicobacter pullorum MIT 98-5489 cont2.40, whole genome shotgun sequence Length of sequence - 33580 bp Number of predicted genes - 38, with homology - 36 Number of transcription units - 10, operones - 7 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 154 - 213 5.8 1 1 Op 1 . + CDS 240 - 1217 992 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 2 1 Op 2 . + CDS 1174 - 1332 86 ## 3 1 Op 3 1/0.250 + CDS 1356 - 1838 317 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) + Term 1842 - 1876 -0.7 4 1 Op 4 . + CDS 1894 - 2319 308 ## COG0789 Predicted transcriptional regulators + Term 2339 - 2379 -0.9 5 2 Op 1 . - CDS 2430 - 3065 427 ## COG1279 Lysine efflux permease 6 2 Op 2 1/0.250 - CDS 3070 - 3939 766 ## COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 7 2 Op 3 2/0.000 - CDS 3936 - 4364 400 ## COG0251 Putative translation initiation inhibitor, yjgF family - Prom 4530 - 4589 7.5 8 2 Op 4 4/0.000 - CDS 4624 - 5889 1293 ## COG0477 Permeases of the major facilitator superfamily - Prom 5914 - 5973 7.2 9 2 Op 5 . - CDS 5993 - 6577 684 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) 10 2 Op 6 . - CDS 6587 - 7432 805 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 7458 - 7517 10.5 + Prom 7482 - 7541 9.8 11 3 Tu 1 . + CDS 7585 - 8013 481 ## COG1733 Predicted transcriptional regulators 12 4 Op 1 . - CDS 8198 - 10477 2855 ## gi|242309587|ref|ZP_04808742.1| predicted protein 13 4 Op 2 . - CDS 10486 - 10818 129 ## gi|242309589|ref|ZP_04808744.1| predicted protein - Prom 10851 - 10910 12.8 + Prom 11154 - 11213 2.5 14 5 Tu 1 . + CDS 11233 - 12510 800 ## COG3202 ATP/ADP translocase + Prom 12911 - 12970 10.1 15 6 Op 1 5/0.000 + CDS 13073 - 13723 721 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 16 6 Op 2 16/0.000 + CDS 13745 - 15352 1508 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 17 6 Op 3 8/0.000 + CDS 15356 - 15925 502 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 18 6 Op 4 . + CDS 15922 - 16884 897 ## COG3301 Formate-dependent nitrite reductase, membrane component + Term 16998 - 17043 -0.2 19 7 Op 1 . - CDS 16879 - 18111 824 ## COG2081 Predicted flavoproteins 20 7 Op 2 3/0.000 - CDS 18095 - 19021 1150 ## COG0825 Acetyl-CoA carboxylase alpha subunit 21 7 Op 3 27/0.000 - CDS 19027 - 20256 1287 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 22 7 Op 4 22/0.000 - CDS 20312 - 20545 481 ## COG0236 Acyl carrier protein 23 7 Op 5 1/0.250 - CDS 20612 - 21355 226 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 24 7 Op 6 . - CDS 21398 - 22162 791 ## COG3022 Uncharacterized protein conserved in bacteria 25 7 Op 7 . - CDS 22209 - 23645 1766 ## COG0174 Glutamine synthetase - Prom 23668 - 23727 8.3 26 8 Op 1 . + CDS 23939 - 24292 341 ## CCC13826_1384 hypothetical protein 27 8 Op 2 . + CDS 24289 - 24876 710 ## Arnit_2676 hypothetical protein 28 8 Op 3 . + CDS 24880 - 25110 345 ## gi|242309603|ref|ZP_04808758.1| predicted protein 29 8 Op 4 . + CDS 25130 - 25495 427 ## WS1573 hypothetical protein 30 8 Op 5 . + CDS 25470 - 25769 509 ## WS1572 hypothetical protein + Term 25827 - 25869 -0.9 31 9 Op 1 . + CDS 25876 - 27900 2259 ## COG2217 Cation transport ATPase 32 9 Op 2 . + CDS 27902 - 28030 156 ## 33 9 Op 3 . + CDS 28005 - 28220 173 ## WS1569 hypothetical protein 34 9 Op 4 13/0.000 + CDS 28285 - 29721 1635 ## COG1538 Outer membrane protein 35 9 Op 5 24/0.000 + CDS 29718 - 31019 1450 ## COG0845 Membrane-fusion protein 36 9 Op 6 36/0.000 + CDS 31019 - 31708 291 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 37 9 Op 7 . + CDS 31705 - 32925 388 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 + Term 32938 - 32977 -1.0 38 10 Tu 1 . - CDS 32947 - 33432 425 ## COG1238 Predicted membrane protein - Prom 33480 - 33539 3.5 Predicted protein(s) >gi|197283010|gb|ABQU01000040.1| GENE 1 240 - 1217 992 325 aa, chain + ## HITS:1 COG:YPO2806 KEGG:ns NR:ns ## COG: YPO2806 COG0667 # Protein_GI_number: 16123004 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Yersinia pestis # 1 325 1 329 329 386 58.0 1e-107 MQKRKLGDLEVSALGLGCMGMSYGYGKPKDVKEMRELIAKAYDRGINFFDTAEVYGPYIN EELVGSAIKDFRDKIVVATKFGIQITEGRQIVNSSLDVIKNSIEGSLKRLNIECIDLYYQ HRVDPNTPIEEVANLMAEFHKQGKIKAWGLSEAGIETIKQAHSVFPLTAIQSEYSMWWRE PEKELFNVLEERGIGFVAFSPLGKGFLTGKIGANSSFKSDDFRSTVPRFNQENIKANLAL IDELEGIAQAKNATKAQIALAWNLAQKPYIVPIFGTTSLERLDENLGALGVSLSQKELDS INSKLDSIKIVGERYSGDAAKRVGK >gi|197283010|gb|ABQU01000040.1| GENE 2 1174 - 1332 86 52 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSDTAAMRQKELANRASNNAKLAIKQVNMKQASVSWHKMARKAGQNRKLSYT >gi|197283010|gb|ABQU01000040.1| GENE 3 1356 - 1838 317 160 aa, chain + ## HITS:1 COG:BS_ywrO KEGG:ns NR:ns ## COG: BS_ywrO COG2249 # Protein_GI_number: 16080652 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Bacillus subtilis # 1 148 1 155 175 90 36.0 1e-18 MQTLLLFAHSYFKDSVVNKALIEEANTLDSVCVQNLSLLYPDYHIDTKAQINLVREAKSI IWQFPLFWYSVPALLKHWQDEVLTPIYKEQIFKDKAFGVVATMGGHKGDYEGSNASIEEL LKPIYYGFERRAMRIKPPFCIYAEDFSALPFEEYKKYLLG >gi|197283010|gb|ABQU01000040.1| GENE 4 1894 - 2319 308 141 aa, chain + ## HITS:1 COG:Cj1563c KEGG:ns NR:ns ## COG: Cj1563c COG0789 # Protein_GI_number: 15792868 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Campylobacter jejuni # 1 141 1 141 143 122 46.0 2e-28 MAYTIIEVERKTGVASRTLRFWADKGLFPFVQKDSNGVRYFSEKDVQWVFWIDCYRQIGM SIEDIKHYITLCAKGESSAQERLEIIQRQRQKTLDDIEKLQVVLEKLDYKVAYYKEMIAK QKDDINPLNKEYVKRKKRVRF >gi|197283010|gb|ABQU01000040.1| GENE 5 2430 - 3065 427 211 aa, chain - ## HITS:1 COG:PM1618 KEGG:ns NR:ns ## COG: PM1618 COG1279 # Protein_GI_number: 15603483 # Func_class: R General function prediction only # Function: Lysine efflux permease # Organism: Pasteurella multocida # 6 203 20 218 226 142 46.0 4e-34 MNLSILLQGFALSFSLFAAIGAQNVFVLKQGIMKNHILAVCLVCIACDVVLIALGVFGVA GIFSQNPYLTITLGALGTLFVLSYGLLALKSAFKTKALKSLNPDSRTTSLSSIILQTLAI TLLNPHVYIDTIVVIGAYSLTLDSTQKIIFYVGAMSASLMWFASLGFFSHKARLWFQTPK TWAIVDFITALIMFGIAYGLWRFTLAQPSLI >gi|197283010|gb|ABQU01000040.1| GENE 6 3070 - 3939 766 289 aa, chain - ## HITS:1 COG:XF1250 KEGG:ns NR:ns ## COG: XF1250 COG0010 # Protein_GI_number: 15837851 # Func_class: E Amino acid transport and metabolism # Function: Arginase/agmatinase/formimionoglutamate hydrolase, arginase family # Organism: Xylella fastidiosa 9a5c # 3 288 8 291 293 129 29.0 9e-30 MNTLRLIYPQWQGGDIASLVPELNKEDSSLGYYLGAELLEFLAPKSLTSKTAKVPISLEY PKSGVRESKNGILNYDEIVAQSKAALEILNTHKPDKILTLGGECSVSIVPFSYLANKYKD DVAIVWIDAHKDLNLQGDSYEGYHAMALAACFGLIDTDGIAKILPAHFSPKDSILVGVRD FEGKKERCEEIGVKVLSPEESRDFKKLLEWLKSRGKSKVVVHFDLDVLDPSELIMAVGVV ENGLKIAEVVNLINAINTNYDLVGLSIAEHMPRVAIKLRNMMRELPLFE >gi|197283010|gb|ABQU01000040.1| GENE 7 3936 - 4364 400 142 aa, chain - ## HITS:1 COG:slr0318 KEGG:ns NR:ns ## COG: slr0318 COG0251 # Protein_GI_number: 16331889 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Synechocystis # 28 136 93 200 203 84 41.0 5e-17 MSESTKQGIMVHNPKGAISDSFKESGASTAIVIDNKIVKISGQGGWDRDFNFPHKELKDE INQALENVGFVLESTGSSWSEVYSVTIYLTGKITDEINNLMASQFKKRCKIAPIWTMVQV AGLGLPQMRVEVVVEAYKGARK >gi|197283010|gb|ABQU01000040.1| GENE 8 4624 - 5889 1293 421 aa, chain - ## HITS:1 COG:Cj0250c KEGG:ns NR:ns ## COG: Cj0250c COG0477 # Protein_GI_number: 15791621 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Campylobacter jejuni # 4 383 5 384 436 377 53.0 1e-104 MAKLKKDEIKVLGLSSLGGMLEFYDFIIFVFFTQVISSLFFPSTLSPFWASINTYGAFAA GYFARPLGGIIMAHFGDKSGRKKMFMLSILLMVIPTFALGLMPTFESIGYAAPIALLVIR ILQGIAIGGELPGAWVFVYEHSNQQSLGFHLGIFTSAVVSGILLGSIVTLAVNASFTQEE IWEYAWRIPFILGGIFGIISLFLRKFLNETPVFQEILALKQTQNLPIKEVFRTSQFSVIK SFFSTWILTGCVVITVLLTPNLLGEVFNLNPISKVIYQIIAIFFLASGNVFAGIISDKLG VARASLLFGIALAVFALGFYCSVNYGNIPLDVLLLLYYLMAFSAGLMVFTPIVMTQSFPA TIRYSGISFAYNISYALFGGLTPIFFAWAKESGQILALGWYMVLLGILTVIIGKMHKKQI S >gi|197283010|gb|ABQU01000040.1| GENE 9 5993 - 6577 684 194 aa, chain - ## HITS:1 COG:HP0630 KEGG:ns NR:ns ## COG: HP0630 COG2249 # Protein_GI_number: 15645254 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Helicobacter pylori 26695 # 1 193 1 193 194 249 60.0 3e-66 MQTILLLNGGKAFGESGGKLNEALHNVAKETLESLGLKVLETHIDKGYEVEAELQKLLDS DVWIWQFPGWWMGEPWIVKKYIDEVLYAGHTKLYANDGRSRQDPSKKYGSGGLAQGKKYL FSTTWNAPLEAFTESGQFFESQGIDGLLFHLHKAHEFMGMQALPSFMCNDVHKNPDFEKY KADYKAHLQKVFAL >gi|197283010|gb|ABQU01000040.1| GENE 10 6587 - 7432 805 281 aa, chain - ## HITS:1 COG:TM1009 KEGG:ns NR:ns ## COG: TM1009 COG0656 # Protein_GI_number: 15643767 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Thermotoga maritima # 4 277 6 283 286 348 58.0 6e-96 MQTITLNNGVKMPILGYGVFQIDPKETQKCVEDALEVGYRLIDTAAAYRNEEAVGAAIKS SGIKREDLFITTKLWIDDVSEAQAIKAFESSMQKLGLEYLDLYLIHQPYNDLYGAWRSLS KLYKEGRIKAIGVSNFYSDRITDFCLHNEIIPALNQIECHPFFQKQEEQKILKEYGIAMQ SWASFAEGKNDIFTNSTLQNIGAKYGKSVAQVILRWLIQREIAVIPKTLRKERMRENFNV FDFELDSSDMEMIAKLDENKTYFINHRDVESVKMLANYMKQ >gi|197283010|gb|ABQU01000040.1| GENE 11 7585 - 8013 481 142 aa, chain + ## HITS:1 COG:CAC1483 KEGG:ns NR:ns ## COG: CAC1483 COG1733 # Protein_GI_number: 15894762 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 20 122 2 104 108 127 53.0 6e-30 MAKRKKDSEIHLDITAEKRQKLESYHCAMEAGIAMIGGKYKIMIIYHLMKGALRYNQIAK ALPNATPKMLSQQLKELEFDGIITRTLYPVVPPKTEYSLTRLGEALKPVIESLCAWSQGY YEACGIEDIHKSELPDKTNCPK >gi|197283010|gb|ABQU01000040.1| GENE 12 8198 - 10477 2855 759 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309587|ref|ZP_04808742.1| ## NR: gi|242309587|ref|ZP_04808742.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 759 1 759 759 1203 100.0 0 MDSRTSDGGFIVNGNIIANGGTIDIKNVNAMDMQHNANIVVQNGGILNISGVNRLIMTST NNAPTLKNDGGIINIDTSLYNYNKQEGSYTRPNNGGYILQNSGTTTITGSLYNAGFDNVV SNGARKDALIEIKGGIFEVKGDFENGNHDSSRYYDYFGQGTLNASGDSEVIVRNDFISDA QGEDLAGGGVLYRSSVNLSDNAILRVGNSFKAYRSDISLTDLSSIYTKDFFLDTTANIKF IGGGSGFGSINASNSATFNGGVEFKLANPLMQTDNKTYLILDTPSLNGTSLQEGKVEVIG SSGGTINNAEIVKVGDKYYLSFNGAIPPIDPDIGGGDGSGGSGGDSGNEGSDSGNGGSDG GNTGGGGETGGDSGDSENGGNQGSGDLGGGSESGGDNPQKPNRPTSNNPVYNAIYEALVG KGGIIDDEATLHKATQTIEKQLDHIKEGPKSYQGSVMHHNMLGRIAHTTRTQYALNSQQK YASIAGDYVRMPYFEKEETQNNVYVNVLAGYSHYKDSDTSDYGINFGYDKEIKDSFFGGI YGSVSKRNMKAENMDLDGYNYNIGLYGRSHLTKAVELDMLGYYTNSQSEYTRTFAGIGNN TASYDTHNIGFQARLGYRVKFENGHSLKPYIGFFGSYYHMPQYKENGNVLPITRSENDFM NLYGAVGVEYRKINENGGSFFVAIEGVQGKPVFGDKDYEVRMGVSRIKYENEEEFFGSVF AGANLPISENWDLSATVMAQAYDNGLTSVSGSVGLRYAF >gi|197283010|gb|ABQU01000040.1| GENE 13 10486 - 10818 129 110 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309589|ref|ZP_04808744.1| ## NR: gi|242309589|ref|ZP_04808744.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 110 1 110 110 199 100.0 4e-50 MRKFLILSLACSSALAVNNGDTWAGSFQESNVTLNDGDSINVTLQRDPNFQDNRGNNFGY SGGTNFEYSTNSGNSTLILKKTPTPIQLQANICHSTIIKGKKFKLMKEVT >gi|197283010|gb|ABQU01000040.1| GENE 14 11233 - 12510 800 425 aa, chain + ## HITS:1 COG:XF1738 KEGG:ns NR:ns ## COG: XF1738 COG3202 # Protein_GI_number: 15838339 # Func_class: C Energy production and conversion # Function: ATP/ADP translocase # Organism: Xylella fastidiosa 9a5c # 2 424 14 432 441 239 34.0 1e-62 MLFYKIFNLKQEEFKLFLYAASFIFLLFASYAILRPLRDAFGIEGGDKEIKWLFLATFIT TLLASLLAMWLSTRVKRKNYLNAIYLFFALNLLVFYIAMNQVSPHTQGFIWLCRVFYVWV SVFNLFVISSAWSLLADVFSRDSSKRLFGIISAGASLGSIVGASMVSLLVTHIGNTNFIF VSIVFLLLALVIKWLLLQEAHNLAPNKESFMQRFQKPIGSKNPFVGFSLIMHSKYLLAFL AFILLLTSVSTFLYVEQARIIKEIFLTREERTQAFANIDFIVQMASFIIQIFFTAKIVEF LGMKWLLSLLGFVVGVGFIVLSFTHPMFLPFVIVMSLRRVGEYALVKPGREMLFVPLDSD SKYKVKNFFDTVVYRGGDAISSQLEGALIKFGVGVSLLVGAGLSFIWGALGLYLAKGYEN KIKES >gi|197283010|gb|ABQU01000040.1| GENE 15 13073 - 13723 721 216 aa, chain + ## HITS:1 COG:STM2065 KEGG:ns NR:ns ## COG: STM2065 COG0243 # Protein_GI_number: 16765395 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Salmonella typhimurium LT2 # 1 210 1 214 758 210 49.0 2e-54 MSIHRRDFLKGVGVGSVALGMPGTLGAFSGKIEGSSKFVPSICEMCSTRCPIEARVDNGS KVFIQGNPFSIATGGAVCARGGSGVSQLYDPNRLVNPIMRVGERGEGKWKEVSWEEAYEY IAKKLNEIKEKYGAHTVAFASKTGPEQTFLNQFAYAYGSPNTFDHGNTCPSGYTTALMSV YGNGGVSRDFANCKFMLNFGHNVYEGMVISYARGIT >gi|197283010|gb|ABQU01000040.1| GENE 16 13745 - 15352 1508 535 aa, chain + ## HITS:1 COG:STM2065 KEGG:ns NR:ns ## COG: STM2065 COG0243 # Protein_GI_number: 16765395 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Salmonella typhimurium LT2 # 1 532 229 757 758 481 45.0 1e-135 MVSLDPRFSILSSKASEWIPIRPGGDAAFMMAFLHTLIFEELYDKKFVEKYTIGFDKLKE SIKDYTPEKMAKECDIPADKIIALTRECASFAPHCMVDFGHRATFTPEEIEFRRSIAIAN ALLGNMEVKGGLYFPKGAGIYNKIAGEKVAPIFKGSILPKLPEPKQPRIDFVDVKEGEFS KIPKNRGVYSKIYECILSGNPYALKGVFITRSNPVMTVAGSDSVVEAIKKLELFVCVDVY ISDTAQYADIILPESTYLERDEQFLANNGKNPGYQVRQKVVKTIGNTKPSWQIYLELAQK MGYGDAFPYKDMDDFRMKQGYEYPEDMFEIKHKGLMSYGIPLLARDPESVKKFVEKYPNS KQFLDSDNEFAEFLKCNTKSGKIELYDEVLQKACGRGGLTYNDPKLKGDGDFYFIQGKTA VHTNGHTANVPWLNTLMNDNAVWIHEKVAKKMNLKKGDKIKITSKNGSQIGSVLPTIGIR EDTLFAYFGFGHTSKHNTISYGKGLSAGHLLENTISPVAGNNVHTIGVKIQKVEG >gi|197283010|gb|ABQU01000040.1| GENE 17 15356 - 15925 502 189 aa, chain + ## HITS:1 COG:STM4279 KEGG:ns NR:ns ## COG: STM4279 COG0437 # Protein_GI_number: 16767529 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Salmonella typhimurium LT2 # 3 187 36 221 223 195 50.0 4e-50 MAKYAMIHDSIKCIGCQGCTIACRSENAVPDGFFRLKVKMDGPHGVFPNLSFNYVRHSCE MCEHTPCVTVCPTHASFMDEDGIVDIDANKCVGCLYCVVACPYNARYVNPETKVPDKCNF CKHTHLKQYGEPACVAVCPTDALIFGDLDDPNSPIFDILSTKPFITNKPHLGTKPKLFVI PNNKGGIEL >gi|197283010|gb|ABQU01000040.1| GENE 18 15922 - 16884 897 320 aa, chain + ## HITS:1 COG:HI1066 KEGG:ns NR:ns ## COG: HI1066 COG3301 # Protein_GI_number: 16272997 # Func_class: P Inorganic ion transport and metabolism # Function: Formate-dependent nitrite reductase, membrane component # Organism: Haemophilus influenzae # 10 315 12 318 321 172 38.0 6e-43 MNEIWGPENPSIVWHWLIAVYLFLAGLSSGAMMTALSVEWMNPQKKAPWDAFVRAGVLIA PLTIILGLVLLIFDLTKPLNFYRLLITYNFSSVMSLGVLLLLFYTPLSVVYAVMRYRNAL ENSFLGGLMKAFSGILDWLEAHSLWFGRLVFALAAGVGVYTGFLLSAVQTFPLYNSPILP ILFLASGLSSGIAACICVGLLFFEKEVSQNTTKYLLTMDLRVIPIESLLLFALFVGLYFQ GGEKAIAAITALSVGAWAWVFWLGVIGFSVVIPSVIALTALKNHAYKVNFILLNAVSIMI GVFALRMYILYAGQLHLGIL >gi|197283010|gb|ABQU01000040.1| GENE 19 16879 - 18111 824 410 aa, chain - ## HITS:1 COG:STM3588 KEGG:ns NR:ns ## COG: STM3588 COG2081 # Protein_GI_number: 16766874 # Func_class: R General function prediction only # Function: Predicted flavoproteins # Organism: Salmonella typhimurium LT2 # 7 402 4 395 398 195 29.0 1e-49 MGVSNNFKIAIIGAGASGIFCATLLASLKIPLILFDKNKTLGKKLLATGNGHCNIHNKNL KHSCYQSTSFTPQEIQTILNNFDYFAFEKHCKKIGLFLECKDNDKIYPASSSAKSVINIF ESLLKESHISLKLQEEILSLSYKEESFCLQSTQNSYTFSHVILACGSEASPKLGGSDKGL LLAQKLGLEILPTYPSLVPLKLNSTAINNLSGIKIKANITLKDDDSTLFKTYDDILFTNY GVSGFGILDLSSYLHQAKNPKIILDLLPNFSSQQLEKSLIYLIKSYPNRSTKEILNGFIH PKLAQLLSENLKLKITNTKTIKHTIYTLKNLLLDSPSYYGFESAEVSGGGVSGNEISKQT FESKKFKNLYLIGEMLDIVGNRGGYNLAFAWASAWACTKAISTHLAQRGL >gi|197283010|gb|ABQU01000040.1| GENE 20 18095 - 19021 1150 308 aa, chain - ## HITS:1 COG:HP0557 KEGG:ns NR:ns ## COG: HP0557 COG0825 # Protein_GI_number: 15645182 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Helicobacter pylori 26695 # 1 307 1 307 312 449 71.0 1e-126 MATYLDFELKIKTLQENIATAQLKGDTHAIEILQKDLEKEVERVYSNLSDYQKLQLARHP DRPYAMDYIGILLKDSIEIHGDRHFSDDNAIVCFLGKIDHQKVMVIGEEKGRGTKNKLQR NFGMPNPEGYRKALRVAKMAEKFEIPLLMFVDTPGAYPGVGAEERGQSEAIAKNLQEFSQ LKIPTISIVIGEGGSGGALAISVADRLAMMEYSVFSVISPEGCAAILWNDPSKIENATQA LKITPNELKAAKLIDDIIKEPIIGAHRDKEGAAQAIKEYFLNSLKEIQNDKNYLQTRYDK LMSYGSFQ >gi|197283010|gb|ABQU01000040.1| GENE 21 19027 - 20256 1287 409 aa, chain - ## HITS:1 COG:jhp0505 KEGG:ns NR:ns ## COG: jhp0505 COG0304 # Protein_GI_number: 15611572 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Helicobacter pylori J99 # 1 408 1 411 412 570 72.0 1e-162 MRRVVVTGIGMINSLGLNREDSFRAIIEGKCGIKTISSFDASEFPVKIAAEITDFDPNSV MDAKEVKKADRFIQLGIKASKEAMEDSGLVDSQKNLLVDGERFGISSASGIGGLGNIEKN SVINFEKGPRRISPFFIPSALVNMLGGFISIDFSLKGPNLASVTACAAGTHGIIEAAKTI MLNSADRMLVVAAESAICGVGIGGFAAMKALCDRNDEPQLASRPFDAQRSGFVMGEGAAA LVLEDYEIAKARGAKIYAELVGFGESGDANHITTPAPEGEGAYRAMKAALAMANTQVDYI NAHGTSTKYNDYYETLALKKVFNGSVPPVSSTKGQIGHCLGAAGGLEAVISIMAMQKGIL PPTINQTQKDPDCDLDYIPNVAREAKIDTIMSNSFGFGGTNGVVIFKRV >gi|197283010|gb|ABQU01000040.1| GENE 22 20312 - 20545 481 77 aa, chain - ## HITS:1 COG:DR1942 KEGG:ns NR:ns ## COG: DR1942 COG0236 # Protein_GI_number: 15806940 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Deinococcus radiodurans # 1 73 35 107 110 87 61.0 8e-18 MAIFDDVKAVVVEQLNVNEGEIKPESRFVEDLGADSLDVVELVMALEEKFDINVPDEDAE KISTVGDIVAYIEKAKN >gi|197283010|gb|ABQU01000040.1| GENE 23 20612 - 21355 226 247 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 4 247 2 242 242 91 30 6e-18 MKFRGKNVLITGASKGIGAEIAKELAQMGLKVWINYRSKPELADNLKKEIENNGGQAAVI CFDATNEKDFIAGIEAILSSDGELSYLVNNAGITNDKLSMRMQVEDFNGVLEANLTSCFI GCREALKIMRKQGYGSVVNIASIIGEIGNIGQCNYAASKGGMIAMTKSFAKEGGSKAIRF NCITPGFIQSDMTENLKEEIKASYAANIPLGRFGNGKEVAGAVAFLLSDHANYITGEVLK VNGGLYM >gi|197283010|gb|ABQU01000040.1| GENE 24 21398 - 22162 791 254 aa, chain - ## HITS:1 COG:Cj0984 KEGG:ns NR:ns ## COG: Cj0984 COG3022 # Protein_GI_number: 15792311 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 1 240 1 237 246 136 39.0 4e-32 MWFLFSPSEKKHLHHPKETLNTARFYDNFLAQNLQEVLEKYASYLQTSNDYAIQKLFGTK HIPLEELALAQNILNSPIVDSILRYSGVAYKALDFLALNTKEQNYLKQRVLIFSNLFGIL RAEDKIPYYDLKQGEGFLDFDTKNFYKQNRANFLNFLNKEKEILDLRAGFYQKCLELPQD FIIYEPIFLKNSKVVSHYAKHYRGILLKECAKSQLQSLNDLKNLEIQGLKLLNIDTKTIK NIQKNFLTYEVKND >gi|197283010|gb|ABQU01000040.1| GENE 25 22209 - 23645 1766 478 aa, chain - ## HITS:1 COG:jhp0461 KEGG:ns NR:ns ## COG: jhp0461 COG0174 # Protein_GI_number: 15611528 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Helicobacter pylori J99 # 3 478 4 481 481 763 73.0 0 MQRPQIDTKAVAKFFEECKANEVEFIDFRFTDIKGIWHHLSFSASAIDESSFEGIPFDAS SIHGWQPVDKSDMILIPDPVRYFIDPFTADTTMVVFCDVWDIYKNEPYEKCPRSIVKRAM KYLKESGIGDVAYYGPENEFFVFDSIKIKDSVNCQYYEIDTEEGEWNRDKEFDGVNMGHR PGTKGGYFPVAPVDSMVDIRAEMVKVLNQVGLETFVVHHEVAQGQGEIGVKFGDMLEAAD NVQKLKYVVKMVAHLNGKTATFMPKPLYNDNGSGMHTHISIWKEGKNLFAGDAYEGLSEM ALHFLGGVLKHARGLAAFTNASTNSYKRLIPGFEAPSILTYSAQNRSASIRIPYNSGEKA KRMEFRFPDSSSNPYLAFSALLMAGLDGITQKCDPGKPMEVNLFELTLDEIREKGIKQLP HTLRHAVEEMLVDRAYLKEGAVFSEEFIQTYKKFKFETEIWPWEGRPHPFEFLTTYSC >gi|197283010|gb|ABQU01000040.1| GENE 26 23939 - 24292 341 117 aa, chain + ## HITS:1 COG:no KEGG:CCC13826_1384 NR:ns ## KEGG: CCC13826_1384 # Name: not_defined # Def: hypothetical protein # Organism: C.concisus # Pathway: not_defined # 12 116 3 104 107 82 41.0 4e-15 MGEKSLIQNYSITPQDLEMFAEYFSIIHHIDGRIRLRASAKLKKFLQENDTINPFNILEA IEASPAIKSIKFNKIIGSLTIQYDTNLFEPIYWESCIKGERLEEIAQKINLMIKEIG >gi|197283010|gb|ABQU01000040.1| GENE 27 24289 - 24876 710 195 aa, chain + ## HITS:1 COG:no KEGG:Arnit_2676 NR:ns ## KEGG: Arnit_2676 # Name: not_defined # Def: hypothetical protein # Organism: A.nitrofigilis # Pathway: not_defined # 3 194 24 222 225 97 33.0 2e-19 MTTQEKILIALDDEYKAYSFYNKAMQLYGMPFVNLFQSEANHINALSLHLQNLNVPIPQN PYEDIVIPNTLSGALEAAIENENQNIALYNSLIEGEQDSLVLDTFYRLQAASFNNHIPSL FNALNANTSLLDKINNGRALLSETGEIVAQLQNGELTQGQLEAFLNKLNYSLMGGMILGA FGAIILNEFLNQNKE >gi|197283010|gb|ABQU01000040.1| GENE 28 24880 - 25110 345 76 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309603|ref|ZP_04808758.1| ## NR: gi|242309603|ref|ZP_04808758.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 76 1 76 76 126 100.0 3e-28 MALPFIAGLVIGSGVALLFTKKDMLQKGVDFAKSFAKLDGEDCAKPKKDNEKTPNNNVEV KRVVRKRLTKKSQKVE >gi|197283010|gb|ABQU01000040.1| GENE 29 25130 - 25495 427 121 aa, chain + ## HITS:1 COG:no KEGG:WS1573 NR:ns ## KEGG: WS1573 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 2 100 1 94 108 71 43.0 7e-12 MIINTGIPRSVVGHTISGSIIGAMVSGVYEYSKYKKGEVSKSEAINTTLKATLEGGIIAA SGIAATNALGNPAKKPLSNALEAMSYVALGVAGVYGIQQAFKQNSQNFTTRRVNDKSTKS K >gi|197283010|gb|ABQU01000040.1| GENE 30 25470 - 25769 509 99 aa, chain + ## HITS:1 COG:no KEGG:WS1572 NR:ns ## KEGG: WS1572 # Name: fdhA # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 9 99 20 108 110 78 52.0 6e-14 MTNQPNPNNPYIQNNSTNTQQNADKQNNGILNVFGDQNTQKDFIKGALIGAVATFILTNE NAQRAIFKGFAKVSGLFEAGIEELKERYEDAKAEVNSQE >gi|197283010|gb|ABQU01000040.1| GENE 31 25876 - 27900 2259 674 aa, chain + ## HITS:1 COG:FN1190 KEGG:ns NR:ns ## COG: FN1190 COG2217 # Protein_GI_number: 19704525 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Fusobacterium nucleatum # 75 670 134 729 735 319 34.0 1e-86 MPLRIELDSLPEILNVRINTILNNIIVQYNGDLERIQETIYQILLKHIKQCNIQKNEDSY LALRDEIPSSAEVVRATTALLVSPFLNSLPLKMGFSLIACFPLLVSGIKETWQNGINSRT LEAMAVAISLYLRDFKTANSTNFMLALGEYIEEITMYKSDDLIKELSKPAGGNAWIEVRD KNGISLKQVSSEELKIGDIVVIGAGETILIDGHIIKGEALVNQISMTGEATPTYKGRGDR VLSGTIVQEGNIRVWAESVGGDTAMARIKNYIEETLVQKSAKELSASKMADSLVPITLGL SIFSYLFTRDLMRAASVLQADYSCALKLTTPVAFKSAISSAGKEGIIIKGAKSLESLQMS EVFIFDKTGTLTKGDLEVLEVYSFSKEWNEDLILNLAASIEEHYFHPVAQAVVKAAKEKE FVHFHHDEVTFIVAHGVKSEINGKSVVIGSRHFLEDDEGISFVQHQNEIQKILKRGETPL FIGYDSKLLGVILLKDILRENSKRALERLRQSGVKEIIMLTGDTKQKAAQIAKELGINRY YAELLPTQKAEILEQIMQEGKKVAFVGDGINDAPALIKADTGIGMHKGADIAKASADVVL LRDDIEAVAEARELAIACLNKVQRNFKITVGINSLILGLATFGKLSAIQTAFAHNGTTIA LLFNAIQKIKVKKE >gi|197283010|gb|ABQU01000040.1| GENE 32 27902 - 28030 156 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYFILWAATAVSGALMAKTIHQSYKKYQKYTKKKYEKNEARN >gi|197283010|gb|ABQU01000040.1| GENE 33 28005 - 28220 173 71 aa, chain + ## HITS:1 COG:no KEGG:WS1569 NR:ns ## KEGG: WS1569 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 6 58 4 56 73 62 60.0 4e-09 MKKTKLETKREIAKIGMATSLFLTAGSTMFLKNKAARRLHIGAGIALIGFSLWHTSLYPK EKKSTKKLEKS >gi|197283010|gb|ABQU01000040.1| GENE 34 28285 - 29721 1635 478 aa, chain + ## HITS:1 COG:PA0427 KEGG:ns NR:ns ## COG: PA0427 COG1538 # Protein_GI_number: 15595624 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Pseudomonas aeruginosa # 63 471 60 467 485 139 27.0 2e-32 MFRIILGIVVFIVFVGCSTKLPTDAEITQKIPQEFANQSILEQISKQNRTQEILPPQEQI KILFDDEVFNELVEIAIKQNMDLQIAKARILQARSQLKSAWGELFPQVSANLSATDSHSR GNSSSLNGSSIVESSSQNTQIGATLSWEVDLFGRLNAAKNAQESFYYQSLENLSNAQITL LGDLANLYFTLRETSLNIVLTKENILYYQDILELTRLKVENGLLDSTELFDAQDMLTDEQ NTLEQLKTLQEETKNALLVLLDIKNLPFNLVGNYHFVIPNNFSLQTTPADVLLFRPDIKA SIQSLYAQVYTKANAKASLFPILSLSADLSDVLGSSEGNAGNLAWSLAASLAAPILNRTQ LTQNYFLQDAILQETYLTLQKNLNTALGEIENAIFNTKSTELQTQNNQQRLENAKSYYEF SANRRSIGLIDELEHLTNKASLNNSQKNLNTSKNSQLQAIIVLFKAFGGNFYLSKEAK >gi|197283010|gb|ABQU01000040.1| GENE 35 29718 - 31019 1450 433 aa, chain + ## HITS:1 COG:AGc3332 KEGG:ns NR:ns ## COG: AGc3332 COG0845 # Protein_GI_number: 15889118 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 3 427 22 429 437 234 35.0 4e-61 MTDTQNILNTINPKRNYKKMFLLWGMVCAIFVVIVGGIYWWNNRKPDITYETQKAFMGDI SSTISANGTLSPTNEVSIGTVISGIVLEVLVDVNDEVKKGQILARIDPESIEQDLYRYQA QLESAKAQLKSAEVSLDEKEWQYKQYQDLYQKTNGKTPSILELETAKTAYNDALSNVEIR KASIKEIETSIRSTEVDLKNSKITSPIDGVVLQRSIEVGQSVAASFQAPEFFIVAESLEE MELNASISEADIGKVKVGQKVEFSVDSYPTKIFKAAVDRVNYGSSNASSSSSSSSSSTTT TLSEIVSYEARIYVDNKDLLLRPGMSATADIEVSSAKNTLLVPSSALYFTPTIQTDNKKK STSFNPFVQMRPKRDKKTNIQQEVSNGAVWILENGSPKKVEVEVGMSDGQNTQIFSDVIK PEMLVITGQKQGK >gi|197283010|gb|ABQU01000040.1| GENE 36 31019 - 31708 291 229 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 217 2 212 245 116 34 2e-25 MGFIKLIDIHKSYGKPPNVFEALRGVNLEISQGEFVALMGPSGSGKSTMANILGCLDSPT KGIYDFCGVNVCDLNLKQKALLRRHYIGFIFQGFNLLPRTTALENVELPLLYRQVPKKER LRLSMEALEMVGLDKWYNHSSNELSGGQQQRVAIARAIASKPLFLLADEPTGNLDTKRSI EIMEILSRLNLESKITILMVTHEPDMAKYATREIVFLDGKVRSDSKVIK >gi|197283010|gb|ABQU01000040.1| GENE 37 31705 - 32925 388 406 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 8 406 11 413 413 154 26 9e-37 MILNAFFLAFRQIRRNFLRAILTMLGVIIGVGAVIIMITLGNGTTQVITERMSSLGSNIL LVFPARDQTPGKGGRKQFMLQDVEDLELQIGHLVRAIAPLSSTSVLAQFRQGNTQTQAQG INADYFIATNWEVTQGRNFTKEEYRAGSNVCIIGESVRKNLFNTSNVNPLGMRIKLGSIV CDCVGILESKGQGAMGNDQDDVILLPLKTYQRSISKSDSLYNISRLMISLKDEVDSTMAV REITEALRGIRNIREGQKDDFEIMDTKQIIEMMKSTTANLTLFLGAIAGVSLIVGGIGIM NIMLVSVTERTKEIGTRLAIGALESEVLLQFLIEAVTLSSLGGLIGIILAFFGSLGISHL MQIPFDFDYSVALIAFIFSAFIGILFGYLPARRASRLNPIDALRHE >gi|197283010|gb|ABQU01000040.1| GENE 38 32947 - 33432 425 161 aa, chain - ## HITS:1 COG:Cj0341c KEGG:ns NR:ns ## COG: Cj0341c COG1238 # Protein_GI_number: 15791709 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 10 154 12 141 147 99 51.0 2e-21 MQTLETFGLLGLFGICFLSSSLYPLGSEAFVAFFATLDYSLILVWSVATLGNTLGSLSTY AVGRIGENFILGRYFSKAKEITKRSKQEENAKRLTKYQKYLNFVSKYGFIGAFLSFLPFL GDVFALALGAVKYPFWKATFFIALGKGLRYYLLIKTMQLLN Prediction of potential genes in microbial genomes Time: Tue May 24 02:22:42 2011 Seq name: gi|197283009|gb|ABQU01000041.1| Helicobacter pullorum MIT 98-5489 cont2.41, whole genome shotgun sequence Length of sequence - 11462 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 5, operones - 2 average op.length - 5.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 46 - 813 1035 ## COG0107 Imidazoleglycerol-phosphate synthase - Prom 885 - 944 6.8 + Prom 828 - 887 10.1 2 2 Tu 1 . + CDS 917 - 1930 1003 ## COG0180 Tryptophanyl-tRNA synthetase 3 3 Tu 1 . - CDS 1989 - 2930 1114 ## COG1052 Lactate dehydrogenase and related dehydrogenases - Prom 2958 - 3017 4.7 + Prom 2903 - 2962 8.3 4 4 Op 1 . + CDS 2989 - 3843 976 ## COG0548 Acetylglutamate kinase + Prom 3863 - 3922 8.8 5 4 Op 2 . + CDS 3944 - 4897 932 ## gi|242309618|ref|ZP_04808773.1| predicted protein + Term 4959 - 4996 1.2 6 5 Op 1 . - CDS 4986 - 5495 395 ## COG2731 Beta-galactosidase, beta subunit 7 5 Op 2 . - CDS 5505 - 5972 478 ## COG2062 Phosphohistidine phosphatase SixA 8 5 Op 3 3/0.000 - CDS 5982 - 6671 892 ## COG0775 Nucleoside phosphorylase 9 5 Op 4 . - CDS 6673 - 7593 937 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 10 5 Op 5 . - CDS 7603 - 9168 1523 ## COG0018 Arginyl-tRNA synthetase 11 5 Op 6 . - CDS 9171 - 9416 388 ## WS0187 hypothetical protein 12 5 Op 7 17/0.000 - CDS 9460 - 10251 258 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 13 5 Op 8 44/0.000 - CDS 10235 - 10966 224 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 14 5 Op 9 . - CDS 10963 - 11460 329 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Predicted protein(s) >gi|197283009|gb|ABQU01000041.1| GENE 1 46 - 813 1035 255 aa, chain - ## HITS:1 COG:aq_181 KEGG:ns NR:ns ## COG: aq_181 COG0107 # Protein_GI_number: 15605750 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate synthase # Organism: Aquifex aeolicus # 5 254 2 250 253 310 62.0 1e-84 MTATLTKRIIPCLDIKDGRVVKGVNFLGLQDAGDPIEVAKRYNDEGADEITFLDITATSD GRKTTIEMVKSVAKEIFIPLTVGGGIKSLEDIYNLLNVGCDKISLNSSAIANPDLITQGA KRFGSQCIVVAIDAKMTENKKGWEVYTHGGRKNTGIDLEQWAKEAYERGAGEILLTSMDC DGTKNGYDLPQLQKISNLVDIPLIASGGAGSKEHILEALLNGADAALAASIFHYQEIQIA SLKHFLRERGIAVRI >gi|197283009|gb|ABQU01000041.1| GENE 2 917 - 1930 1003 337 aa, chain + ## HITS:1 COG:HP1253 KEGG:ns NR:ns ## COG: HP1253 COG0180 # Protein_GI_number: 15645867 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Helicobacter pylori 26695 # 11 337 16 339 339 416 62.0 1e-116 MQESQDISNKQPRVFSGIQPTGNIHLGNYLGAVKNWVERQNEYENIFCVVNSHAITIPQN PKILKEKTFELCAMLLACGIDPKKSTLFIQSEIQEHTSLAWLLTCITPMGDLSRMTQFKD KSQKNPKSIFAGLFNYPNLMSADILLYKSEYVPVGEDQKQHIELARDTAMRFNRDFGETF VVPKPLIQKEGARIMGLDDPTKKMSKSSGDKPNHLIALLDSPDEILRKFKKATTDSEGLI AFDENRAGVYNLLSIYQCFSKETKEQIESFFAGKGYGELKAKVAEIVIENLKPIRESYEK LIADSSYLHKILEEGAETAREIAQKTYKDAKEKMGLV >gi|197283009|gb|ABQU01000041.1| GENE 3 1989 - 2930 1114 313 aa, chain - ## HITS:1 COG:HP0096 KEGG:ns NR:ns ## COG: HP0096 COG1052 # Protein_GI_number: 15644726 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Helicobacter pylori 26695 # 4 312 6 311 314 313 54.0 2e-85 MQNKIVFLDASSLGENNLKDKLQQLGTYTEYQTTSPDETLSRCKEANIVLTNKVILDKEI LNALKDTLKLVCITATGMNNVDLQTAKNLGIEVKNVAGYSTKSVAQHTLMMALALSAKLP FYDSYCKSGEYAKSPIFTNLSTPLELLNGKKWGIIGLGTIGLEVARLANAFGAEVNYYST SGKNQNPNYTSLPLDALLQTSSIISIHAPLNEATQDLINKNNLCKIKEGGILINVGRGGI VNEKDLAEEMQKREIYAGFDVFTKEPMVENHPFLNPKIANQLILTPHNAWGYEDSKEILI QGVLKNIQEFLAK >gi|197283009|gb|ABQU01000041.1| GENE 4 2989 - 3843 976 284 aa, chain + ## HITS:1 COG:alr1245 KEGG:ns NR:ns ## COG: alr1245 COG0548 # Protein_GI_number: 17228740 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate kinase # Organism: Nostoc sp. PCC 7120 # 8 283 17 293 297 238 45.0 8e-63 MHNHSKIVSILLDALPYIKLFRGSKIVIKYGGAAQINPELKEQFAMDIVLLYMLGIKPII VHGGGKRINELLGALEIESEFVDGLRVTSLEALKVVEMVLSGEINKEITAFLNYHGVNAL GISGKDASLFLAKPKDNGKYGYTGEIIATKGEVIDNLLAQNLVPVIAPIACGEESGHPGF NINADSAASAIAIATKAKKAIFLTDTQGVLNEDKKIIQSLTLQETNRLIEKGVISGGMIP KVEACLDCISNGVEKAHIIDGRIPHSLLLELFTSAGIGSEFVGE >gi|197283009|gb|ABQU01000041.1| GENE 5 3944 - 4897 932 317 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309618|ref|ZP_04808773.1| ## NR: gi|242309618|ref|ZP_04808773.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 317 1 317 317 513 100.0 1e-144 MASISNSLHNSNLYANVFNQTKNQTTNFLTAQETMTNKEALQAIVDYVSPIEKRGIVLDS PSYFEFENELIQKSKEINPPTKSQMQEAKEFLKREMNSIISEIYQNNKQTIEDSIEIEKA IERGEDKKFPSGGYELLNLLKAYPCIPNNSLDNGGENLLEQIKRYVDTELNAIGTTFFNV AQDYIPKEQLKEIQDKLAIVHSYYLNGNSIEIDNKKFSYNATMDNFNQFFVTEVTSIEDL VENNAEYYLLQISYTASQSIFDILNQKEKLEKENQDLKNKQAIEAYSYGNGYSSTLTSKT SKEIDSFINQMIKEAKA >gi|197283009|gb|ABQU01000041.1| GENE 6 4986 - 5495 395 169 aa, chain - ## HITS:1 COG:jhp0395 KEGG:ns NR:ns ## COG: jhp0395 COG2731 # Protein_GI_number: 15611463 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase, beta subunit # Organism: Helicobacter pylori J99 # 4 169 5 178 178 95 36.0 4e-20 MFVGYLPDIAKKFKKNEILAKVFGYLYDALDEDSEVFRRISKMQAGETFEVYFDGGIKAI EQAYYTKSPKEAFYESHQEMVDFQMVINGKEIFFVAPNSLCEIKTPLDSTKDLIEYHPSP YCSSILLFGGNLAVFESIDVHAGGIATNTSELVQKVVVKIPKDLVKLNF >gi|197283009|gb|ABQU01000041.1| GENE 7 5505 - 5972 478 155 aa, chain - ## HITS:1 COG:SSO1195 KEGG:ns NR:ns ## COG: SSO1195 COG2062 # Protein_GI_number: 15898048 # Func_class: T Signal transduction mechanisms # Function: Phosphohistidine phosphatase SixA # Organism: Sulfolobus solfataricus # 3 140 4 139 161 70 40.0 1e-12 MRLILVRHAKAEDREKWVGEDDLKRPLTKKGKKQAKKIAKYIHKQYPKVDAIVSSLALRA CDTAKYIAKLQDQSTFFLSPSLNPEVGLEGYLKHKDEIEEDWQTLVVVGHEPTISEFVQL ICGFKTSNIKIRKGCIIELERENQDEWFLVGLRNF >gi|197283009|gb|ABQU01000041.1| GENE 8 5982 - 6671 892 229 aa, chain - ## HITS:1 COG:Cj0117 KEGG:ns NR:ns ## COG: Cj0117 COG0775 # Protein_GI_number: 15791505 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Campylobacter jejuni # 1 228 2 229 229 238 54.0 5e-63 MTIGILGAMQEEISPLLEYYKTYETIAFGGNTFYKVSLPNKTLIIACSRIGKVHSSLSAA TMILHFGCEKMIFNGVAGGINPNYKIGDLVIGEKLCQHDVDITIFGHPFGYFSEGKIFTP TDTSLNNLALEVAKEFAIPLHQGIIATGDQFISSKEKKEWIKNEFKADAIEMEGASVAVV CDNLNIPICVIRAISDNASDEALISYEEFLEHSAKQSANLVIKMVEKLR >gi|197283009|gb|ABQU01000041.1| GENE 9 6673 - 7593 937 306 aa, chain - ## HITS:1 COG:Cj0116 KEGG:ns NR:ns ## COG: Cj0116 COG0331 # Protein_GI_number: 15791504 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Campylobacter jejuni # 1 304 1 304 306 286 52.0 3e-77 MKLSIIFPGQGSQSIGMGKNLFDNSKEIQELFEKASDILKEDMQKLCFEENDKLNLTRYT QPAILLVSYSVFHLIKPKIFENIHMSLGHSLGEFSALCASGALSFEEALKLVSKRGELME ESCKKQQAGMMVVLGLEDSILEELCEKKRNVGLKVWCANYNGDGQMVLAGSREDLSALEV ELKGLGAKRALMLPMSVASHCPILDNMCDEFSTLLQETLQDSFAFPIISNVTARPYNTKS QALELLSKQLISPVLYKQSIRENDASIDSFIECGGNVLKGLNKRLTSKETLSLQTYEEIQ NFLQKD >gi|197283009|gb|ABQU01000041.1| GENE 10 7603 - 9168 1523 521 aa, chain - ## HITS:1 COG:Cj1175c KEGG:ns NR:ns ## COG: Cj1175c COG0018 # Protein_GI_number: 15792499 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Campylobacter jejuni # 1 521 5 528 530 536 54.0 1e-152 MYHKIKKIVDETLGITSVLEQPRDKKFGHFALPTFSFAKTLKKSPQEIAQNFAKSLESLE EISSINIINGYVNFFLSDKFLETCTKDFLKPYAPKKETILLEYVSANPTGPLHIGHARGA IFGDSLSRIGKYLGYSIATEYYINDAGVQIENLGKSIYFAGRHLFLGESYELPEGCYKGE YILELAKDAKESFGMEIFENADSIAKLSLFGKDKMLDEIKSNLAEIGIFFDHFVSEKELY AQWDSTLELLRANNGIYEQEGKIWLKSTEFGDEKDRVIVRENGEPTYLAGDIIYHKNKME RNFNQYINIWGADHHGYIARVKAAIEFLGYESSKLEILLSQMVALLKGGEAYKMSKRAGN FILMKDVVEDVGADALRLIFLSKKADTHLEFDVEDLKKQDSSNPVYYINYAHARIHTLFE KSQNSLDNFTKDFTNLSESLRDLLVLALNLSKVLEDSFTQRNPQKVVEYLRTLAGEFHHF YNEEKILNTPNEKQILSVLSIVAQSLNAGLALLGIQAKKSM >gi|197283009|gb|ABQU01000041.1| GENE 11 9171 - 9416 388 81 aa, chain - ## HITS:1 COG:no KEGG:WS0187 NR:ns ## KEGG: WS0187 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: Protein export [PATH:wsu03060]; Bacterial secretion system [PATH:wsu03070] # 1 79 1 76 80 68 54.0 6e-11 MGFSSWSHWLIVLLIIVLLFGAKKIPELAKGLGSGIKNFKKAIKEDEDETTLNATESQQD KIQKDSTTKETTTTPNETTKV >gi|197283009|gb|ABQU01000041.1| GENE 12 9460 - 10251 258 263 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 4 229 278 501 563 103 28 5e-43 METLLKVRDITQSYKKGNFFSQAKEHYVLKNIHFSLTPNRNLGILGQNGAGKSSLVRILL GLERPKSGKVTILDHEYFQGKDKLIRQNIQGIFQDSQSALNPRLSARECILEGLANYNLI TDKKLQSQKLANFVGLDPQSLDKKSAYFSGGEQQRIAIARAIALKPKILILDEALSNLDV HLQAKMIDNLKEIQRHFGITFIVISHDLRIILQLCQEIILLQKGEIIFQTTQEEGIKNTI LRDKSGIFKEFFQASLQNSFYAS >gi|197283009|gb|ABQU01000041.1| GENE 13 10235 - 10966 224 243 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 1 223 8 258 563 90 26 5e-43 MIEIKNFSLFIDEKKILNNLNLTLKTKQKIALLGQSGSGKSLLARAILGLLPQNAITSGE IQSNQKFGVILQNPASCFDGIFTLKEHFLETLKAHHLETLSSDKWGLEEVGLKKEILDSY PFELSGGMLQRAMIALSICIKPDFIIADEMTSDLDCLGVWQISNLLLNLQNKMGFGMLFI THDLFLAHKMAEEIIILHNGEIIEQGNRDEIFKTPKHTKTKELLFENERLLNTPWGDFRG NFA >gi|197283009|gb|ABQU01000041.1| GENE 14 10963 - 11460 329 165 aa, chain - ## HITS:1 COG:BMEII0489 KEGG:ns NR:ns ## COG: BMEII0489 COG1173 # Protein_GI_number: 17988834 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Brucella melitensis # 1 154 119 272 284 177 53.0 7e-45 DVFLTFPTFILALFFIAIFGVGITNVILAIFLTHWAWYARMVRSIVLEVKTQKYIQAAKM LGGSDFKIMIKHILPAVFVQMIILITLDFGHMLLHISGLSFLGLGVQAPMPEWGVMIQDF APYIMEYPLLMLYPGICIFISVAIFNTLGESLRDKYSLESLKEQK Prediction of potential genes in microbial genomes Time: Tue May 24 02:22:59 2011 Seq name: gi|197283008|gb|ABQU01000042.1| Helicobacter pullorum MIT 98-5489 cont2.42, whole genome shotgun sequence Length of sequence - 4799 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 49/0.000 - CDS 1 - 301 249 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 2 1 Op 2 38/0.000 - CDS 303 - 1235 692 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 3 1 Op 3 . - CDS 1235 - 2773 1418 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 2804 - 2863 9.9 + Prom 2760 - 2819 7.6 4 2 Tu 1 . + CDS 2971 - 3402 475 ## COG1017 Hemoglobin-like flavoprotein + Term 3602 - 3636 -1.0 5 3 Tu 1 . - CDS 3665 - 4690 1291 ## COG0059 Ketol-acid reductoisomerase - Prom 4710 - 4769 4.7 Predicted protein(s) >gi|197283008|gb|ABQU01000042.1| GENE 1 1 - 301 249 100 aa, chain - ## HITS:1 COG:AGc4571 KEGG:ns NR:ns ## COG: AGc4571 COG1173 # Protein_GI_number: 15889781 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 5 100 41 136 300 86 44.0 1e-17 MRLKISLFLAITLILIAILAPIIFPYDPTLGNLEDKFLPPSLEHWLGTDHLGRDILSRLG HGARISIFSVFIISLLIAISSFFVGIVAGYKGGILDNILM >gi|197283008|gb|ABQU01000042.1| GENE 2 303 - 1235 692 310 aa, chain - ## HITS:1 COG:ECs4344 KEGG:ns NR:ns ## COG: ECs4344 COG0601 # Protein_GI_number: 15833598 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Escherichia coli O157:H7 # 1 309 1 310 314 253 46.0 2e-67 MWLFIFKRFFLLIPILLVVSFIVFGILRLSPIDPAFAYLTQSQIPPTQEALEATRIELGL NLPFLEQYFIWLKNLFILDFGNSYVTKRPVLEDILYYLPTTLNLAFISMLVVMFFGIILG ILGAIKKDSWIDRGLGIFAFFCVSMPSFWFGFLLIYIFTLGFGILSPYEDFSPKSYILPV ITLSLMSIAINMRLVRVSYLEHQNQRNILYAYARKLPQNVIQKHILKNSLLPIITSFGMH FGEILGGAVVVEILFGLPGFGRYAVSAIYSHDYPVIQAFMLIMVVVFVLLNLIVDILMAY LNPKIRYKEN >gi|197283008|gb|ABQU01000042.1| GENE 3 1235 - 2773 1418 512 aa, chain - ## HITS:1 COG:BMEII0487 KEGG:ns NR:ns ## COG: BMEII0487 COG0747 # Protein_GI_number: 17988832 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Brucella melitensis # 14 512 13 524 526 389 38.0 1e-108 MIKKTPLIFTQHIFIFLFLLFLPFVAFGREITTAWALNAGNINPHLYSPNQMYAQIMLYQ PLIRFDGQKFVGEIAEFWEISKDNKTYTFFIKENLLFSDGSPFDAYAIEANFKAILENKT RHSWLGITQKIISAKALDSKTFELKLKSPYIATLNELSLPRPFRFIAPSAMLNGSTKNGI KAPIGSGAWILKESRLGAYDIFVPNPYYHGNKPQISKLTIKILPDANSRILAFESGALDI LVGKDSISRENFLRLSKNAKYQTIQSQPQGTFHIIINASKDRKTADIHLRKAILAAIDKQ SILEKILLKIDKPANSLFNPSLEFCNTTMQNATFNPQKAKENLTQSTYNQESLQFVYVAN NPIQKAIAEAIQNNLAKSGIKIELIASEPISFYQKQKNGDFDLIFNETWGNPFDPHSFIA SMLIPSHADFAAQKDLNSRQKIESTIHKILNQTDEKILKHAYQTLLNLLDESAIYLPLSH NVVLGIYNKNKIKSYQIGAMETEFLFEAMEVK >gi|197283008|gb|ABQU01000042.1| GENE 4 2971 - 3402 475 143 aa, chain + ## HITS:1 COG:BH1058_1 KEGG:ns NR:ns ## COG: BH1058_1 COG1017 # Protein_GI_number: 15613621 # Func_class: C Energy production and conversion # Function: Hemoglobin-like flavoprotein # Organism: Bacillus halodurans # 2 141 6 147 154 140 50.0 6e-34 MLDIQTKELVKSTIPALKSQGEDITKVFYRELFTRYPQVKSMFDMQKQKDGSQPKALAMA VLNAAKNIDNLEKIRPSIESIGKTHVRLNVRPEHYPLVGECLLVAIKEVLGASDEVLEAW SKAYGEIAEFYIDIEKKIYQEQK >gi|197283008|gb|ABQU01000042.1| GENE 5 3665 - 4690 1291 341 aa, chain - ## HITS:1 COG:Cj0632 KEGG:ns NR:ns ## COG: Cj0632 COG0059 # Protein_GI_number: 15791992 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Ketol-acid reductoisomerase # Organism: Campylobacter jejuni # 1 341 1 340 340 493 72.0 1e-139 MALKVYYDKDCDLGLIQKKKVAIIGFGSQGHAHAENLRDSGVEVVIGLYKGGKSWGKAEA KNFKVLEVSEATKWADVVMILIPDELQADVFERDIKAHLSEDKIIAFGHGFNIHFGQIKA PKGVGVIMVAPKAPGHTVRSEFVRGGGIPDLIAVEQDTSKGDAKAIALSYAAAIGGGRSG IIETTFKDETETDLFGEQAVLCGGVSSLVKAGFETLVEAGYPEEMAYFECLHELKLIVDL MYEGGLATMRYSISNTAEYGDMVSGPRVINEQSKKAMKEILSDIQEGRFAKDFILERKAG YARMNAERKNLANHKIEQVGERLRAMMPWIGAGKLVDKDKN Prediction of potential genes in microbial genomes Time: Tue May 24 02:23:13 2011 Seq name: gi|197283007|gb|ABQU01000043.1| Helicobacter pullorum MIT 98-5489 cont2.43, whole genome shotgun sequence Length of sequence - 44562 bp Number of predicted genes - 51, with homology - 49 Number of transcription units - 23, operones - 8 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 244 204 ## COG1555 DNA uptake protein and related DNA-binding proteins - Prom 267 - 326 7.7 2 2 Op 1 3/0.000 - CDS 357 - 1874 976 ## COG0606 Predicted ATPase with chaperone activity 3 2 Op 2 . - CDS 1877 - 2383 509 ## COG0242 N-formylmethionyl-tRNA deformylase 4 2 Op 3 . - CDS 2383 - 3486 699 ## WS2211 hypothetical protein 5 2 Op 4 29/0.000 - CDS 3496 - 4086 632 ## COG0740 Protease subunit of ATP-dependent Clp proteases 6 2 Op 5 2/0.250 - CDS 4083 - 5387 1459 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) 7 2 Op 6 . - CDS 5467 - 8550 3652 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins - Prom 8772 - 8831 8.5 8 3 Op 1 2/0.250 - CDS 9179 - 10243 1005 ## COG1377 Flagellar biosynthesis pathway, component FlhB 9 3 Op 2 . - CDS 10236 - 10799 449 ## COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A - Prom 10830 - 10889 7.5 10 4 Tu 1 . + CDS 10986 - 11867 789 ## COG2896 Molybdenum cofactor biosynthesis enzyme + Term 11915 - 11965 -0.9 + Prom 11881 - 11940 4.1 11 5 Op 1 . + CDS 11979 - 12218 229 ## COG2194 Predicted membrane-associated, metal-dependent hydrolase 12 5 Op 2 . + CDS 12269 - 12877 493 ## COG2194 Predicted membrane-associated, metal-dependent hydrolase 13 5 Op 3 . + CDS 12969 - 13439 435 ## COG2194 Predicted membrane-associated, metal-dependent hydrolase 14 6 Tu 1 . - CDS 13476 - 13667 178 ## - Prom 13805 - 13864 9.8 + Prom 13489 - 13548 6.1 15 7 Tu 1 . + CDS 13597 - 13818 171 ## COG0818 Diacylglycerol kinase + Prom 13838 - 13897 6.5 16 8 Tu 1 . + CDS 13921 - 14358 700 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) + Term 14361 - 14395 1.1 + Prom 14411 - 14470 8.8 17 9 Tu 1 . + CDS 14500 - 15264 844 ## WS0773 hypothetical protein 18 10 Tu 1 . - CDS 15223 - 15336 94 ## + Prom 15408 - 15467 6.2 19 11 Tu 1 . + CDS 15514 - 15663 63 ## gi|242309647|ref|ZP_04808802.1| predicted protein + Term 15873 - 15917 7.1 - Term 15561 - 15599 2.8 20 12 Tu 1 . - CDS 15660 - 16748 1102 ## COG0232 dGTP triphosphohydrolase - Prom 16852 - 16911 7.7 + Prom 16593 - 16652 5.4 21 13 Tu 1 . + CDS 16839 - 17537 705 ## COG0491 Zn-dependent hydrolases, including glyoxylases + Term 17786 - 17851 1.9 - Term 17548 - 17587 2.1 22 14 Tu 1 . - CDS 17588 - 19222 1582 ## COG1620 L-lactate permease - Prom 19274 - 19333 9.9 + Prom 19260 - 19319 5.8 23 15 Op 1 17/0.000 + CDS 19472 - 20197 879 ## COG0247 Fe-S oxidoreductase 24 15 Op 2 13/0.000 + CDS 20208 - 21647 1219 ## COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain 25 15 Op 3 . + CDS 21640 - 22287 664 ## COG1556 Uncharacterized conserved protein + Term 22290 - 22328 4.7 + Prom 22289 - 22348 3.3 26 16 Tu 1 . + CDS 22374 - 23045 395 ## COG0603 Predicted PP-loop superfamily ATPase + Term 23139 - 23186 0.2 - Term 23129 - 23168 -0.9 27 17 Op 1 . - CDS 23337 - 23720 388 ## COG2346 Truncated hemoglobins 28 17 Op 2 . - CDS 23730 - 24170 301 ## COG3399 Uncharacterized protein conserved in bacteria - Prom 24332 - 24391 8.3 + Prom 24197 - 24256 9.0 29 18 Tu 1 . + CDS 24276 - 24839 565 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases + Term 24968 - 25012 -1.0 - Term 24743 - 24779 -1.0 30 19 Tu 1 . - CDS 25002 - 27254 3090 ## COG1749 Flagellar hook protein FlgE - Prom 27329 - 27388 4.4 31 20 Op 1 . - CDS 27399 - 28073 679 ## COG0020 Undecaprenyl pyrophosphate synthase 32 20 Op 2 . - CDS 28074 - 28835 676 ## WS2059 hypothetical protein 33 20 Op 3 . - CDS 28832 - 30049 1071 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 34 20 Op 4 . - CDS 30046 - 31887 1495 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 35 20 Op 5 . - CDS 31875 - 32357 398 ## WS2063 hypothetical protein 36 20 Op 6 . - CDS 32306 - 32827 560 ## COG1246 N-acetylglutamate synthase and related acetyltransferases 37 20 Op 7 3/0.000 - CDS 32824 - 33444 550 ## COG0218 Predicted GTPase 38 20 Op 8 . - CDS 33441 - 33908 412 ## COG1934 Uncharacterized protein conserved in bacteria 39 20 Op 9 . - CDS 33905 - 34477 474 ## WS2068 hypothetical protein 40 20 Op 10 . - CDS 34461 - 34955 728 ## COG1778 Low specificity phosphatase (HAD superfamily) 41 20 Op 11 . - CDS 34952 - 35524 571 ## COG0131 Imidazoleglycerol-phosphate dehydratase 42 20 Op 12 3/0.000 - CDS 35528 - 36340 668 ## PROTEIN SUPPORTED gi|223039866|ref|ZP_03610150.1| 30S ribosomal protein S16 43 20 Op 13 . - CDS 36345 - 37418 969 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) - Prom 37450 - 37509 3.5 44 21 Op 1 . - CDS 37520 - 37984 481 ## gi|242309672|ref|ZP_04808827.1| predicted protein 45 21 Op 2 3/0.000 - CDS 37985 - 38641 372 ## COG2121 Uncharacterized protein conserved in bacteria 46 21 Op 3 . - CDS 38625 - 39941 469 ## PROTEIN SUPPORTED gi|229230948|ref|ZP_04355465.1| SSU ribosomal protein S12P methylthiotransferase 47 21 Op 4 . - CDS 39963 - 40205 365 ## WS1777 hypothetical protein - Prom 40318 - 40377 8.6 + Prom 40230 - 40289 9.7 48 22 Op 1 7/0.000 + CDS 40394 - 41389 1328 ## COG1086 Predicted nucleoside-diphosphate sugar epimerases 49 22 Op 2 . + CDS 41386 - 42546 1156 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 50 22 Op 3 . + CDS 42537 - 43217 529 ## COG1083 CMP-N-acetylneuraminic acid synthetase + Term 43353 - 43397 0.3 51 23 Tu 1 . - CDS 43198 - 44562 1065 ## COG3400 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|197283007|gb|ABQU01000043.1| GENE 1 1 - 244 204 81 aa, chain - ## HITS:1 COG:Cj0011c KEGG:ns NR:ns ## COG: Cj0011c COG1555 # Protein_GI_number: 15791410 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Campylobacter jejuni # 1 79 1 79 79 74 51.0 5e-14 MLKLLATLFLAISFLFGAVDLNKASKEELMSIKGIGEAKAQAIIDYREKTPLKSIDDLKN IKGFGPKIIEKIRPSVVVENQ >gi|197283007|gb|ABQU01000043.1| GENE 2 357 - 1874 976 505 aa, chain - ## HITS:1 COG:HP0792 KEGG:ns NR:ns ## COG: HP0792 COG0606 # Protein_GI_number: 15645411 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATPase with chaperone activity # Organism: Helicobacter pylori 26695 # 6 505 5 505 506 483 50.0 1e-136 MAFHLLYCAAQEGLEAKEVEVEVSFTKTLPSFQITGLAGNAIQESRQRVQSSLLANDFKF PPLKISVNLSPSDLPKQGSFYDLPIALLIALYGYCDFSELNNQTTQKYFAFGELGLDGRV KDTPSIYPLLFSLLSHSQNADSIFILPKSAQKFYSKLPNLKAYYVETLKEAIETLKNPPP IEILESNLPFMHKNIAGEKYYFETNFALDFKDIKGQERAKRAALIAACGFHNILFEGSAG SGKSMISSRIPYILPPLNLSEILQLASSTLKISTLRPFRNPHNSATKAAILGSAVGQNIK YGEISLANLGILFFDELPHFPKTILESMREPLENHNFTISRLQTKVTCPADFMFIGAMNP CPCGNLLSTSKECRCNQKEINAYKNKISEPFWDRLDLFVQMQEGSQSTHKITSEEMQQSI LKAFEFQKNRSQKVFNSRLQGEDLERFCTLQKEEKQILDTAITRFGISARGVDKILRVAR SIADLELSEQIQKKHLMEALSYRKI >gi|197283007|gb|ABQU01000043.1| GENE 3 1877 - 2383 509 168 aa, chain - ## HITS:1 COG:HP0793 KEGG:ns NR:ns ## COG: HP0793 COG0242 # Protein_GI_number: 15645412 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Helicobacter pylori 26695 # 1 167 3 169 174 196 61.0 1e-50 MLEVITYPNPLLRQISKPIENFDESLHQLLDAMYETMLNKNGVGISAIQVAKPIRALLIC LPDEEGNQHKENLLEIINPEIIEKNGEILFNEGCLSVPEFYEEVKRYSSLKIHYQNRYGE NLQLEANDYLAVALQHEIDHLNGILFIDKLSIIKRKKFEKELKQKRKS >gi|197283007|gb|ABQU01000043.1| GENE 4 2383 - 3486 699 367 aa, chain - ## HITS:1 COG:no KEGG:WS2211 NR:ns ## KEGG: WS2211 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 51 367 60 377 380 182 29.0 2e-44 MKDDFGAFAELPNFETDGIEKEKLPNIENIPSFASSPQPLENQPLQENTTPKSDSLETYG EQIIQTMLANKIFPSPYNYKIYFEKLLEDKPQDFKNNAMRFLEIESTPSEKQISLENKII KAQSCMVNTLQLISAVFSNFQLLQNILKKHAREIESVNNVNMLQNVITIFEKELGKVGDL SRKQLQEIKSSYNKTTQAIESINNEIICDSRYGIYNKHFLNAKLQSECEEITIDKHKSSL IMIKVAKNLAKKVTSEKNATLINKTITKILTKNCNKSDTLAYCGEGIFGILISHGDKKFA QRFANRLSEKISTTNVFLGEEELSLNICSGICEIQTNQNPKTILKNALDALKKASNNNLS FATYGEN >gi|197283007|gb|ABQU01000043.1| GENE 5 3496 - 4086 632 196 aa, chain - ## HITS:1 COG:Cj0192c KEGG:ns NR:ns ## COG: Cj0192c COG0740 # Protein_GI_number: 15791579 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Campylobacter jejuni # 4 196 2 194 194 325 82.0 2e-89 MSYYVPIVIEKTGRGERSYDIYSRLLKDRIIMLSGQIDDGIASSIVAQLLFLEAEDPQKD IYLYINSPGGVVTSGLSIYDTMNYIKPDICTICIGQAASMGAFLLSCGTKGKRYSLPNSR IMIHQPLGGAQGQATDIEIQAKEILRLKATLNEILAANTNQSLEKISKDTDRDFFMSAQE AKKYGLIDNVLTKSLK >gi|197283007|gb|ABQU01000043.1| GENE 6 4083 - 5387 1459 434 aa, chain - ## HITS:1 COG:jhp0731 KEGG:ns NR:ns ## COG: jhp0731 COG0544 # Protein_GI_number: 15611798 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Helicobacter pylori J99 # 4 431 2 428 451 358 49.0 1e-98 MNPSLKVNKINNANANAQATISLEELDKKIDKVTKNAGKNLKIDGFRKGKIPTAVIKARY GKQLESDAQRECVQDLLQDILKELQVEPNALIGDPKITKFDKKDNGIEIEIELSLTPTIP LDKVESCIPEVKIPEVSEEEINKRLEEIADARAPLVGIEDGRRKLKDGEYAKINFEGFID GEPFEGGKAENYLLKIGSKSFIEGFEEQLIGMKKGEEKEINVTFPENYHAKNLAGKPAIF KVKLQEIQTKGKIEIDDNFAKTLLPEEKEANVALLKEKIKEQLATEKKQELYNNELKGTL IENLHNAIDFDLPTLIVEQEMDLLLRNEFSKLPKEEQEKLAKDSQALKAKREEQRENAQK SVKVTFIIDAIAKRDNIDIHNNEILNTIYYEAMAMRQDPKAVLEYYQNNNLIPAIKMAML EDRILTNLLNKKAQ >gi|197283007|gb|ABQU01000043.1| GENE 7 5467 - 8550 3652 1027 aa, chain - ## HITS:1 COG:Cj0886c_2 KEGG:ns NR:ns ## COG: Cj0886c_2 COG1674 # Protein_GI_number: 15792216 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Campylobacter jejuni # 516 1025 54 573 573 621 66.0 1e-177 MLYHNKSIKELLFNFKKEIKQDLEQTKIDKEKFQQKNKNILLSIKAFFTPPSKNAPPKHT PHPLTLEELAEFSKNSSHADTQESLNETQQEDSTNTQDENTENPHSSLPQTTQDTSPHKI IKLQNNANNSPQKEIKIRLIPIKEAKQQENHDLRQFQMESMMSLQRLKEFDKNGFFTKEE EEDENPIKLIKKPQTEELSTQQTPKNTTTEDNLPTQKTIPDTPKEQPKPIKAYPKNLYSA KPFSAYYDKEPTDSTHDCLIHPNANIPQAIQQESNNEMLEIREALKDEIDQIQKNLDEEE MKDIRYAIQDELKKAQEMLEQNASNEIEESIEEAILEQTQSDIIPQTPQKTQNLEDSIDS IEISKTPQISPTHLETPKEETPLDTQPLPQPTQEANLSTQMHNISFPSYGYGDSYTAPQP RFKAQEPIQEAPSPQQNISKQQQELIQTLQESLEQKKDITLQIAPQNQETIEIQEPFNPI ELPQENPNNSSTLDSTSTIENVEVAEQSQQSQQSQQSQQSLENLENLENLENLEKPHSTQ VQTLSENQALLDEIELTPQASPISTDFILPKLDFLQMPQEERIEIDEEEIDRKINDLLSK LRMFKIEGDIVRTYSGPIVTTFEFRPSPNVKVSRILTLQDDLAMALRAKTIRIQAPVPGK DVVGIEIPNNQIQTIYLREILENELFQNSSSPLTLALGKDIVGNPFVTDLKKLPHLLIAG TTGSGKSVGINAMILSLLYKNSPDTLKLIMIDPKMLEFSIYNDIPHLLTPVITQPKQAII ALDSTVKEMERRYTLMSEARIKNIEGYNKKAEIEGFEPFPYIVVVIDELADLMMSGGKEA ELSIARLAQMARASGIHLIVATQRPSVDVVTGTIKANLPSRISYKVGQKIDSKVILDIFG AESLLGRGDMLFTPPGGGIVRLHAPWSTEEEIERIVEFIKSQRPAQYDENFMPNKDENLN LRYEGEIDELYEEAKRIMLADGKTSISYIQRRLGIGYNKAANIVEQMTARGFLSEQNSKG VREIIGE >gi|197283007|gb|ABQU01000043.1| GENE 8 9179 - 10243 1005 354 aa, chain - ## HITS:1 COG:Cj0335 KEGG:ns NR:ns ## COG: Cj0335 COG1377 # Protein_GI_number: 15791703 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhB # Organism: Campylobacter jejuni # 3 353 5 355 362 318 47.0 1e-86 MADEEKTEAPSARKIEKAREEGNVLKSPDVNAFLGLVVGLVLIFLCFNFWVDGISNIFFQ IYNSFNQDLTRSDAISITISLTFQILYLLAPIFGALVLTGIVANISQSGFLLTTKAIQPK LQKLNFITGIKNIISLKKLLDGFLITFKVMTAFIIAFFVFLGFMKELTTVSLFPIGDQMI WLKDKALILIAILLAFFLVMAITDYLIKRYQYFKSLRMSKQEVKDEFKNQEGDQQIKGKI RSLMFQAAKKRMMQNIPSADVVVTNPTHYAVALRYDSTKERAPRVLAKGVDFLAQRIKDI AKEHEIPIIENPPLARALYKDVDIDKEIPETLYQAMIEVLIKVQQINDERKKAS >gi|197283007|gb|ABQU01000043.1| GENE 9 10236 - 10799 449 187 aa, chain - ## HITS:1 COG:aq_1419 KEGG:ns NR:ns ## COG: aq_1419 COG0746 # Protein_GI_number: 15606598 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein A # Organism: Aquifex aeolicus # 2 176 13 190 201 82 30.0 5e-16 MEIENCIILCGGKSSRMGKKKETLDFFGQSLADFQANKMQKIFKKVYFSSKTTIQNSYKI PTILDSSAEFAAIFGLESSLKTLSQSLFVVSIDSPFLTQQSIAKLQESYQKTKKSTFAKN KKIHPLLGIYAYDSLIPIQKQISQKNYRLMELLGIIETNFIEIEESQTQNLNTPYDYLQA TQGFLNG >gi|197283007|gb|ABQU01000043.1| GENE 10 10986 - 11867 789 293 aa, chain + ## HITS:1 COG:HP0768 KEGG:ns NR:ns ## COG: HP0768 COG2896 # Protein_GI_number: 15645387 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Helicobacter pylori 26695 # 1 293 29 321 321 291 49.0 8e-79 MPNTPMDLGREEDDVPLEGVLNFIKVAIDEGVKKIRITGGEPLVRKGIVDFIGKIYEYSP NIDIALTTNAYLLAPIAKDLKQAGLKRINISLDSLKKEKIVCISKRDGLEKILLGIEKAH KEGFLIKLNMVPLKNINEDEIVDILEYGMGLGIGVRFIEFMENTHAKNGTQGLRSDEILA KIGAKYSYNLLKKDIFGPATLFEIPSKNSYMFGIIAPHNDDFCKTCNRIRLNSEGKLVPC LYHENAVDIKEAMLHGNADEILSKLNLCIQTKPEKNDWNENMVSTRAFYKTGG >gi|197283007|gb|ABQU01000043.1| GENE 11 11979 - 12218 229 79 aa, chain + ## HITS:1 COG:Cj0256 KEGG:ns NR:ns ## COG: Cj0256 COG2194 # Protein_GI_number: 15791627 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Campylobacter jejuni # 1 77 19 94 512 67 50.0 5e-12 MLNYRAFEHVYNNLSSSNFLATLLLVVAYFCLVYIIFALLFVKYLTKFFMIIFLGVSLTS LYFNYFYGVLIDSDMIKMQ >gi|197283007|gb|ABQU01000043.1| GENE 12 12269 - 12877 493 202 aa, chain + ## HITS:1 COG:Cj0256 KEGG:ns NR:ns ## COG: Cj0256 COG2194 # Protein_GI_number: 15791627 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Campylobacter jejuni # 36 183 151 299 512 182 59.0 3e-46 MFLLTIVFSWLIAKINIVYTPLKRQILFRTSSIAVALVLFVACFLPFTKTYVPFFRTHNQ IRLYNTPFYQFYALLRYYQKNLIAKQEFKVLTKEVKIEDANKRLLVMVVGETARAENYSL GGYSKNDTNFFTKQESVIYFSQVSSCGTATAISLPCMFSFSKRSEYSSSEYQQNVLDVLS GGGGAYRGLVTIPADVKGFVRG >gi|197283007|gb|ABQU01000043.1| GENE 13 12969 - 13439 435 156 aa, chain + ## HITS:1 COG:Cj0256 KEGG:ns NR:ns ## COG: Cj0256 COG2194 # Protein_GI_number: 15791627 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Campylobacter jejuni # 1 155 351 505 512 210 61.0 8e-55 MLHIQGSHGPSYYKRYPQEFERFKPTCQTNQLEKCSQESLVNTYDNTLLYTYFILSKIIA LLKQKQDYQSTLLYVSDHGESLGENGIYLHGMPYPLAPKEQTHVPMMFWSNDGQLMKKLD SKKDLEFSHDNIFHTILGYFKAKTPLCDSTLDLLSN >gi|197283007|gb|ABQU01000043.1| GENE 14 13476 - 13667 178 63 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAVLKLSAMKITSKTETSNKCSTKETGRKKLQIIAGMIIPNSILKDISFLKVSIFPQVHI LRF >gi|197283007|gb|ABQU01000043.1| GENE 15 13597 - 13818 171 73 aa, chain + ## HITS:1 COG:Cj0257 KEGG:ns NR:ns ## COG: Cj0257 COG0818 # Protein_GI_number: 15791628 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Diacylglycerol kinase # Organism: Campylobacter jejuni # 2 69 50 117 118 73 67.0 9e-14 MVEHLLLVSVLLVIFIAESFNTAIEACVDLSVDSWHKQAKIAKDCASAGVFFSVVLAIFV WGWILFDNYNKIF >gi|197283007|gb|ABQU01000043.1| GENE 16 13921 - 14358 700 145 aa, chain + ## HITS:1 COG:HP0243 KEGG:ns NR:ns ## COG: HP0243 COG0783 # Protein_GI_number: 15644871 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Helicobacter pylori 26695 # 3 145 2 144 144 140 48.0 1e-33 MSKIVQQLKQIQADSAVFYIKLHNYHWNVTGMDFHPTHKALEEMYDDMADLMDDVAERVL QIGDKPYVTMKDMLAAAKIKEESATSFDSKTIIKAILPEYEYFLNAFRELSDTANEANDK ATIALADEKVANLEKAIWMLKAQLA >gi|197283007|gb|ABQU01000043.1| GENE 17 14500 - 15264 844 254 aa, chain + ## HITS:1 COG:no KEGG:WS0773 NR:ns ## KEGG: WS0773 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 254 6 261 261 256 54.0 8e-67 MKKLILPLLCVFVLSGCLTTTMQTKATMSQSVFIDPVAKSEQTIFIAMRNTSGQNINLQP KIIALLQSKGYTIVDDPQKANFILQANVLYCDIKQENNAVGAGVVGGMAGVGVGAYNHNS ATGAVVGGLAGAALGALAGKLTEDTVFQMQVDINIRQKIKGGTINTNSSASRQASVSDGR RAGLLNSFGGELGNTQGGGRLSDNRTNYNEQIYTGEYSEKQTTLLAEASKLNLNIDEAIP VLEDKIATQISGIF >gi|197283007|gb|ABQU01000043.1| GENE 18 15223 - 15336 94 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAINLKVALFDFNPFANTLYTSSILKDSANLRSDFIL >gi|197283007|gb|ABQU01000043.1| GENE 19 15514 - 15663 63 49 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309647|ref|ZP_04808802.1| ## NR: gi|242309647|ref|ZP_04808802.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 49 1 49 49 70 100.0 3e-11 MLGSIVTIEEKEGLLIEMIITTRVANPCGFYFGFFGEFMARARIFKVWD >gi|197283007|gb|ABQU01000043.1| GENE 20 15660 - 16748 1102 362 aa, chain - ## HITS:1 COG:RSc2968 KEGG:ns NR:ns ## COG: RSc2968 COG0232 # Protein_GI_number: 17547687 # Func_class: F Nucleotide transport and metabolism # Function: dGTP triphosphohydrolase # Organism: Ralstonia solanacearum # 15 354 41 375 387 268 45.0 2e-71 MNPHHRFFQVNPDFRNPFRRDRDRIIHSSYFRRLEYKTQVFLNQSGDYFRTRLTHSLEVS QIARTLADHLGLDENLAEAIALAHDLGHTPFGHAGGDELDKIMRHYGYHCGFDHNFQSFR VVTSLEKRYKEFDGLNLTFATLEGILKHSYPYEKVFLNQWHKDTFKPEFHPSLEAIIVDL SDEIAYISHDIDDGVKYGLINFEILQESKIVQDCLNYVQEKEKISPNDSIFRYRFTSRLI TILVYDIIQNNKPIQSSTQHFKYNAKDSLPISHTQEMQREIKILKKILFKNLYRHEEISR KMFMGKRCVRKLYECLNNDVNLLPKEIQKKIENGAKIHRICADYIASMTDRYAIALYHEL GF >gi|197283007|gb|ABQU01000043.1| GENE 21 16839 - 17537 705 232 aa, chain + ## HITS:1 COG:Cj0809c KEGG:ns NR:ns ## COG: Cj0809c COG0491 # Protein_GI_number: 15792147 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Campylobacter jejuni # 10 229 2 195 198 180 44.0 3e-45 MVVFEDEFYKVVAKPFGEYQTNCYLVLSKEKEESLIIDPGIGASQWVLENAKNPLAILNT HGHFDHVWSNAELKEKLPNTPLLCPLEDAFMLKSDCFGTGLTESKADILVGAKADESPIE STANTANLKRENNYYFGDFEVKFVCYPGHTPGCSVIIISHKKSKQKTMFSGDFIFYRSIG RSDFPYSDSETMKASLEAFLENDEDMPVFPGHGKQTSIKQEQANIPYWLMRI >gi|197283007|gb|ABQU01000043.1| GENE 22 17588 - 19222 1582 544 aa, chain - ## HITS:1 COG:jhp0128 KEGG:ns NR:ns ## COG: jhp0128 COG1620 # Protein_GI_number: 15611198 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Helicobacter pylori J99 # 1 543 1 547 549 592 62.0 1e-169 MEWTQVYNPLNSLWLSALVAFLPIALFFVSLVIFKTKGHTAGALTVILAAIIAVFFYGMP FDKMLFSFVYGALYGIWPIAWIIVAAIFLYKLTVKSGYFDILRESIIAITPDQRLQVILI GFCFGAFLEGAIGFGGPVAITAALLVGMGLKPLYAAGLCLIANTAPVAFGAVGIPIIAMA GVVGVPAIEISSVAGHMLPPLSLFVPFFLVFLMDGFKGVKETWPALFVAGFSFAVVQYLT ATHLGPELPDIASAVVSIAATTIFLKFWKPKNTFKFDEEVGGKQTIEAKQYSASQITLAW LPFVILIAMIIIWTQGWFKEALAFTTLKFNFDSLMGLIQVPPAVNEAKAVNSVFSLPLVL NAGTSIFITALITMALLKVKVSTAVATFGETLNEMKFALLTIALVVGFAYISNYSGLSAT LALALAQTGDAFAFFSPIVGWLGVFLTGSDTSSNLLFGTLQQLTARQLDIPEVLFLAANS VGGVVGKMISPQSIAIACAAVGLVGKESDLFRFTVKYSIVFVIGIGIFTYALAFIFPDLI PMSK >gi|197283007|gb|ABQU01000043.1| GENE 23 19472 - 20197 879 241 aa, chain + ## HITS:1 COG:jhp0127 KEGG:ns NR:ns ## COG: jhp0127 COG0247 # Protein_GI_number: 15611197 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Helicobacter pylori J99 # 1 241 1 242 242 335 69.0 4e-92 MKVYFFSTCIGAAAFADTCVNSIKLLQKEGVQVIFKKDQTCCGQPSFNSGYYEETKKIAL HNMNLFKGNEPIILPSGSCTGMMKVDYIELFEGSEYESQAREFSSRIYELSEFLDKVLKV RYEDKGAPTKVTWHSNCHALRTAKCIDSAKNLIKSLNNVELIELEREEECCGFGGTFSVK EPEISNAMVTQKVQDIASRGVEYILSADSGCLLNISGAMKKQGVNVKPMHLYDFLAQRIG L >gi|197283007|gb|ABQU01000043.1| GENE 24 20208 - 21647 1219 479 aa, chain + ## HITS:1 COG:HP0138 KEGG:ns NR:ns ## COG: HP0138 COG1139 # Protein_GI_number: 15644768 # Func_class: C Energy production and conversion # Function: Uncharacterized conserved protein containing a ferredoxin-like domain # Organism: Helicobacter pylori 26695 # 6 479 8 481 481 664 64.0 0 MSSIKQQYHDIVHTKLEDAQLRKNLLSVMDTLKGNRKKLISTRFLDWEALRQKGKEIKQK NLSKLDNLLETFESNALKNGFIIHWAKNSEEANQIVLEVMQKNGITKILKGKSMASEETH LNAFLKQKGLEPIETDLGEIIIQLIDEPPVHIVAPAIHKNRYQIGEIFHQKLGAPLESEP EKLNEIARVHLRKEFKEFRLGLSGVNFAIANEGAIWLLENEGNGRMSTTACDIHIAFCGI EKVIESFEDASTLNALLIPSATGAPVTCYNNIITSPRKEGELDGPKEVHIILLDNNRSQM LSDSHYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGEVISPQIFGLNKFSPMLD LCSLCGRCSEVCPVKIPLAELIRDLRSERVGQGRKSVVGTDSSTQNPAEIKAMQQFASLA TNPSKWRFVLTMAGIFAPLGKVFAPFVPLLKSWVKYREFPQISGNLHKKVSQMQGVIYE >gi|197283007|gb|ABQU01000043.1| GENE 25 21640 - 22287 664 215 aa, chain + ## HITS:1 COG:jhp0125 KEGG:ns NR:ns ## COG: jhp0125 COG1556 # Protein_GI_number: 15611195 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Helicobacter pylori J99 # 1 215 1 211 211 161 43.0 9e-40 MSKSEILGRVRDSLKNNTHIPSPKVHYANPMNYTHAELLEEYKLNQTNNKAIVRESSVDS LESTIEQILKEVQAKQVLYNTDVKLELTGVESKLIPYTQSVDLAREELFGIDTSIVEARC GVANLGIVGLSANPNAPRLSSLITNNCIYLLKKETIVENLYAGIESIKAYERERSGKEIL PTNIIFVAGPSRTADIELQTVFGVHGPRVVYVVVY >gi|197283007|gb|ABQU01000043.1| GENE 26 22374 - 23045 395 223 aa, chain + ## HITS:1 COG:Cj0016 KEGG:ns NR:ns ## COG: Cj0016 COG0603 # Protein_GI_number: 15791415 # Func_class: R General function prediction only # Function: Predicted PP-loop superfamily ATPase # Organism: Campylobacter jejuni # 3 223 4 223 224 198 46.0 5e-51 MDKAIVLASGGLDSCVSIACALKDGYEVCLLHINYGQRTQSREDRAFSDIADFYGITQKL IVDISYLRQIGGSSLVDSSMPIEEDTIPSAKGAIPSTYVPFRNANMISIAVSWAEVIRAK KIYIGAVEEDSSGYPDCREIFYQKFNDLLKVGLSPKNEVEILTPLIHLSKKEIVQKGIEL EAPLHLTWSCYQNENKACGVCESCKLRLRGFELAGVKDPIKYE >gi|197283007|gb|ABQU01000043.1| GENE 27 23337 - 23720 388 127 aa, chain - ## HITS:1 COG:Cj0465c KEGG:ns NR:ns ## COG: Cj0465c COG2346 # Protein_GI_number: 15791829 # Func_class: R General function prediction only # Function: Truncated hemoglobins # Organism: Campylobacter jejuni # 1 126 1 125 127 164 64.0 5e-41 MQYQEICTEAINQLMDIFYAKIRVDKNGLGEIFNNAIGTSDIEWEAHKKKIANFWQGMLL GSGDYKGQPLKAHLDLPPFPREFFSLWLSLFEECLNKIFSPKIANEILQKAQMIAGRFQY MLYESGH >gi|197283007|gb|ABQU01000043.1| GENE 28 23730 - 24170 301 146 aa, chain - ## HITS:1 COG:HP1502 KEGG:ns NR:ns ## COG: HP1502 COG3399 # Protein_GI_number: 15646111 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori 26695 # 1 146 1 145 145 120 49.0 7e-28 MDMLYPYFLTIHLICAIIFLGFIFVDVVLLTPIRKILGDEFANQMWSVISKRGGKIMPFC LLVLVLSGGAMISRYIGSEIGYWNTTLQQLLVLKAFLALLIFFAVLVSLTFHYLLKKSNP LAKIIHPLALILGLFIVILAKFAFYL >gi|197283007|gb|ABQU01000043.1| GENE 29 24276 - 24839 565 187 aa, chain + ## HITS:1 COG:Cj0466 KEGG:ns NR:ns ## COG: Cj0466 COG0664 # Protein_GI_number: 15791830 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Campylobacter jejuni # 1 187 1 188 198 153 48.0 2e-37 MQDYFKMLYGLGYKRFYNKNEILFFEGEIPKKILVILKGKVRIYKTTQNKEETLHYIEPL NFIAEMPSFLQIPYPASAVCMNECEILEIDLEIFKKQCIGNVDFCLPFIASLCQKIKILE NHISKNSQSLKERVKKFALENKEELQKLTQRQIAQKLNTSPESLSRILKELKNAGFIKTQ KGKIIIV >gi|197283007|gb|ABQU01000043.1| GENE 30 25002 - 27254 3090 750 aa, chain - ## HITS:1 COG:jhp0804 KEGG:ns NR:ns ## COG: jhp0804 COG1749 # Protein_GI_number: 15611871 # Func_class: N Cell motility # Function: Flagellar hook protein FlgE # Organism: Helicobacter pylori J99 # 1 750 1 718 718 611 50.0 1e-174 MLRSLWSGVSGMQAHQVALDVESNNIANVNTNGFKYSRADFSTMVSQTKRSATIPYAGYG GVNDYSVGLGTGIETTTKVFSQGSLQNTDRKADLALEGNGMFVVSNNGGFTNMYTRDGAF SFDAVGNLVTTSGYIVQGWVRDLSQLNCNCGSGNINRVDSTGPVGNITIDPRLTIPAKAT SSVTGNINLTSGTKTENTTCPSPLDTAADNNYIAGGLDRIYDTTDKQIEVAQDMGVMFND AGEALQLQEGQGIWVSYQTATTEPLQIDTNFNGTSSITINGVTITWTNNPNTSGSSNLLA AQVAINNFKDTTGVEALTRGDTLILQNTNQLDGDGSNKNIRVTGRSGAALGFGENPNNLD SAVTVTTAFKYTYTLQTDADSTSGQFRTTEDLRALLQQDANKVKEFGGDSAAAAAGMNGA GGVPPTFLQSNYTVSVKLNSTGQFEINNKDDGVNVANGAAGAAFDNLNIFVSAYNDDLTT TNVLFKNQMKAMNTGVLVEGGNVTSTAGLRMATYAQTLDIYDSLGNKHEFSIEFTKVASN QWDWRIIVPEPAEIIGASAQRPNILEGGSVTFGEQGEILGFNPSTIQFKPNNGAAFPQSI DLDFGTSGGYDGLTSTAAESQANKVTGDGYASGMLQDFYFDATGTMIGKFDNGQNLALAQ VAVATFANYEGLQESGSNLYSESPNSGQATIGTAGTGGRANIQASKLEMSNTDLSRGLTQ LIVVQRGFQASSKSITTSDQILNTLLGLKQ >gi|197283007|gb|ABQU01000043.1| GENE 31 27399 - 28073 679 224 aa, chain - ## HITS:1 COG:jhp1142 KEGG:ns NR:ns ## COG: jhp1142 COG0020 # Protein_GI_number: 15612207 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Helicobacter pylori J99 # 2 222 5 230 234 253 56.0 2e-67 MLKHLAIIMDGNGRWAKNRFKPRFFGHQEGAKTIHSITETCAKKGISYLTLYAFSTENWN RPKSEIDFLMNLLDKYLQEQEQTYLVSNIRFKVIGDISTFSPKLQEKIHYLQSITQEKCN GLTQILALNYGSKDELRRAFLKIQAQKLEITQETISQNLDTATIPEVDMLIRTGGEQRLS NFLLWQSAYAELFFTKTLWPDFCPAELEQMLQEFSLRQRRFGGI >gi|197283007|gb|ABQU01000043.1| GENE 32 28074 - 28835 676 253 aa, chain - ## HITS:1 COG:no KEGG:WS2059 NR:ns ## KEGG: WS2059 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 253 1 256 256 195 51.0 1e-48 MIKQMGQIAQVQNQLQNAASKPTQFNAALPMRLEVMEKLQGIRYMIKVGNIAMETKSIKE LEIGGKYWAMMGKSSSGSITLSNLIKQPHLLKDQNMPLKLSSEVLQEFLQDGTNPFDTMK NFLSDRLANAESKWEFTFLSHMLMSLRHKVLTLPLHYDDEKKDGLMQLRKKKFENQNALE FYSVFANLGATWGILRNIEGEIRLDISVMYESVARLLKNNLHELAFISQAHINVDSKIAP LYDFNDFLLDLEG >gi|197283007|gb|ABQU01000043.1| GENE 33 28832 - 30049 1071 405 aa, chain - ## HITS:1 COG:HP0841 KEGG:ns NR:ns ## COG: HP0841 COG0452 # Protein_GI_number: 15645460 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Helicobacter pylori 26695 # 8 399 13 417 425 256 39.0 4e-68 MNPNLPPLLKDKKIALGVCGSIAIYKSIEILRNLQKLGAKVRIVMSDKSQDFIRPLLFET LSNYEVLCSQTQKWSQSPNNHIEIASWADLFLIAPCTANSINKIAYGIADNILLESFLAF DKTKLIAPAANTKMLENHATLESLEILKQRGISIIDPQSKELACKQIGNGALAEPLEITY QVIRAFYQKDFWQDRQIGISSGGSREKIDSVRYLSNYSSGKMGASLALASYFLGANVTYI GSLLPYTLPLAIQTIHTETSQDFLQSIQKWQNSSTSNKRPFLFMSAAISDYIPKNPLNYK LKKEQIGKEWNLSLEKNIDILQSLPPKQYTIGFKLESQNGIQNATKALQEKHLDAICLNE ITQDFTPLNSQKNHIVWIDKTGKKDLGECDKFSLALKILQEAENL >gi|197283007|gb|ABQU01000043.1| GENE 34 30046 - 31887 1495 613 aa, chain - ## HITS:1 COG:jhp1473 KEGG:ns NR:ns ## COG: jhp1473 COG0768 # Protein_GI_number: 15612538 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Helicobacter pylori J99 # 1 601 1 588 588 588 49.0 1e-167 MDNIINKRLIFIFCIFVLFWLILLVRIFNLSIIDNKHYQEQATKNVLRDEVIAPIRGQIF DRNGEPLATNNIGFSLTFPPRLSLPANLPILEQEIQKLIEFFPQYTKEELIAKYRQKDTS YNHDLISVIDFVEHSLILKYYPQLSQSEFLRITPLARRYYPHNQSASHIIGYIGKANSQD IDKQPITKYTKNIGKEGLERQYDIFLQGQLGNRIVKMDALNREIDIISHKEAIEGSNITT TLDIQLQKSMDKIFEGKNGAAIIMDATNGEILAAGSYPEYNLNHFVGGISYKNWNALRDS PYKPLINKIVNGLYPPGSVVKMGMGLAFLEYAKIDENEEIITPAFIESGGRKFRDWKKEG HGKSNLYKAIKRSVDVYFYLLSQKVDFENVADVLKQMGLGEKTGVDLPNESKGIVPSPSY KMQRLKQKWYDGDSIISSIGQGMFLTTPLQIANYTALIASGKLPTPHFAKQIGNDKLKYS PKDVLNDFQKTKMEVLREGMRQVCSQSGGTAYYATMESKAYLACKTGTAQVVGISQEDKE RIKEEEMDYFHRSQAWITGFLPADNPKYVITLLVEHGGSGSGTGGPILAKLANAMVDLGY VPNKNTTQKKETR >gi|197283007|gb|ABQU01000043.1| GENE 35 31875 - 32357 398 160 aa, chain - ## HITS:1 COG:no KEGG:WS2063 NR:ns ## KEGG: WS2063 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 7 157 1 151 151 81 37.0 8e-15 MQTFSSMRRNSTDKKNLTIFFIVIGIVVYVSISDIFYLLPPLFGVAYVLTQEKYESGDFG AFYFLVPFFIFFEASKGLPFLSTILFMAFSFKVILPKFRKFFGYSRILTPLFILYGYFGY FAFLNFFGAIFDYNVPEFSWILGFYALIEIILVWLFLWII >gi|197283007|gb|ABQU01000043.1| GENE 36 32306 - 32827 560 173 aa, chain - ## HITS:1 COG:MA4339 KEGG:ns NR:ns ## COG: MA4339 COG1246 # Protein_GI_number: 20093127 # Func_class: E Amino acid transport and metabolism # Function: N-acetylglutamate synthase and related acetyltransferases # Organism: Methanosarcina acetivorans str.C2A # 2 173 1 149 151 96 33.0 2e-20 MIITQPTLKDIPKMREILKPEVERGVILERPLDTMANMIRSYHLAWEEEDLLSSQHKLTL ENKSIQDLKNPVLLGFCALHIHSLDLAEIRSLIVSPFAQRKGVATQLILDCIKEAGFLGI SEVLVLTYKRILFEKLGFHEISKENIPNQKIWADCILCKHFPLCDEIALIKKI >gi|197283007|gb|ABQU01000043.1| GENE 37 32824 - 33444 550 206 aa, chain - ## HITS:1 COG:Cj0650 KEGG:ns NR:ns ## COG: Cj0650 COG0218 # Protein_GI_number: 15792010 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Campylobacter jejuni # 9 202 5 196 198 186 53.0 2e-47 MIDFTLSKASFFVSAQNLSQCPPPLLSEIAFLGRSNVGKSTFINLLCNQKNLAKSSQTPG KTQLINFFITHWKQKSTQETSQIYLVDLPGFGYAKVSKTQKKLWDKNLVEFLQKRDNIRL FVHLVDSRHPHLQTDKNLIDFIHQFLRKDQRLLRIFTKFDKLNASEQTKLKKEFPKALFS SSLQKSNHSLIGDFLIKNTLGIGDMQ >gi|197283007|gb|ABQU01000043.1| GENE 38 33441 - 33908 412 155 aa, chain - ## HITS:1 COG:HP1568 KEGG:ns NR:ns ## COG: HP1568 COG1934 # Protein_GI_number: 15646175 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori 26695 # 22 151 36 165 183 101 35.0 4e-22 MKYLFLILFFVLHPLFADEIVVNAQELIADEKSKITQLKGNVQVIRGDDKLECDEAYIYL DKNNRPEKMHAIGKVHFWLTLKDNRKIQGNSDEVIYLPNTQEYQIIGNAFVEEPAKNNKV KGNKIIIRYEDGYINVLGNNNSPARLIFKLEKEKQ >gi|197283007|gb|ABQU01000043.1| GENE 39 33905 - 34477 474 190 aa, chain - ## HITS:1 COG:no KEGG:WS2068 NR:ns ## KEGG: WS2068 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 48 189 38 181 181 67 31.0 3e-10 MRFSSNSKKSFASNLKKGNIVVYFFLFLMIFSILMVLSLSHYQESKRQMNANVSRFEMLD FEYYKISPLGVETFVIGKNAREIGKDAGQLEHINVTHYLFDESTKEFLQSSLAFYDGTKV IFPNGINYSRDSIKFWSEQANYYPDSKEILGQGDFMIFSDNYNIKGKNILYKNGKIYAKN IDGNLKTDKK >gi|197283007|gb|ABQU01000043.1| GENE 40 34461 - 34955 728 164 aa, chain - ## HITS:1 COG:jhp1478 KEGG:ns NR:ns ## COG: jhp1478 COG1778 # Protein_GI_number: 15612543 # Func_class: R General function prediction only # Function: Low specificity phosphatase (HAD superfamily) # Organism: Helicobacter pylori J99 # 1 164 1 164 164 156 48.0 2e-38 MIQLIILDVDGTLTNGQIIYGNDGNEIKSFNVKDGLGIAAWIKLGKKVAIITGRQSKIVE NRARELNITYIKQGISNKAEALKEILEESQIPLNEVAVIGDDLNDLSMFKMVHYSFAPKD SAKEIKKHAKKVLKNKGGEGAVREMIDYLIKKEKLQAKLYEIFL >gi|197283007|gb|ABQU01000043.1| GENE 41 34952 - 35524 571 190 aa, chain - ## HITS:1 COG:CC3734 KEGG:ns NR:ns ## COG: CC3734 COG0131 # Protein_GI_number: 16127964 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate dehydratase # Organism: Caulobacter vibrioides # 4 190 7 196 196 179 46.0 3e-45 METITRNTKETQIQASLEVYGKGIAKIQTGIGFFNHMLESLCKHAYWDLTLECKGDLEVD YHHSVEDCGIVIGELLKKNLFPIQKIERFGNSAVVMDESCVECDLDISNRPFLVFEVDLK GKVGEFDCELVEEFFRALVFNAGLSTHLTQKRGKNQHHLIEATFKAFGVALRRACVKNDT IEIPSTKGIL >gi|197283007|gb|ABQU01000043.1| GENE 42 35528 - 36340 668 270 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|223039866|ref|ZP_03610150.1| 30S ribosomal protein S16 [Campylobacter rectus RM3267] # 5 270 9 286 286 261 49 4e-69 MKKYFIFAASFLLLILSGCSNKASNSYYYGSKTPNYGSMNNSQQAHKATMRPYQINGKWY YPTMVALGETSDGIASWYGPNFHGKKTSNGETYSMYAHTAAHKTLPMNTIVRVTSKENGK STIVRINDRGPFVSGRIIDLSNSAARDIDMIAKGTANVRIEVIGFNGSISSSMPLTKEAL AKSEYKVANTQTSMQLSRFLVQIGAFRKKEGAQKYQQMHSTSHGYQAIIKEYMLNGYPIY RVMLSGFKSEAEARDFITTQKVTGAFIATE >gi|197283007|gb|ABQU01000043.1| GENE 43 36345 - 37418 969 357 aa, chain - ## HITS:1 COG:HP1572 KEGG:ns NR:ns ## COG: HP1572 COG0741 # Protein_GI_number: 15646179 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Helicobacter pylori 26695 # 3 356 14 364 372 259 44.0 5e-69 MKIFFALLLFCSFAFAQFDSISYDTKSEEVLKTFDVEPDFLNNSHFIDVKNTFLNDIQQN YLMQKFKNGYEFIPTLKEMFLKAGIPQEFLYLAMIESGFSLSAKSNKRAIGMWQFMPKTA KALGLDINSQIDERKDPIKSTKAAIIYLKDLKERFGKWYLAAIAYNCGEGKLKKAIKEAG SDSLSVLLDADKKYIPFESRMYIRKILSVSLLFHNINMLKTNDYDYFLNRGATSLLATIE VTPATPLAKIANQANLSLKKLKEYNPQFKRNITPTYAKIYSVYLPYQFLATYKEKNLNQA NLHAKSYLLHRVSKGDTLYSISKRYGISSKKITQYNAIKNAHALSINQEIVIPLEKG >gi|197283007|gb|ABQU01000043.1| GENE 44 37520 - 37984 481 154 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309672|ref|ZP_04808827.1| ## NR: gi|242309672|ref|ZP_04808827.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 154 1 154 154 245 100.0 7e-64 MKKWLFFVVCSLILIWAYFQFSPSYSLSRKAKEEFAKGNYQESYHLANLALEKNLYNKAA FSVANQSKQRLNIQNFLNKTKENYNILIQILQKPKLSPQEFLQIQWIYEAFIREYQTLFF FNHPTKQEKEEIESYAQWFKQLKLKIDSAKEIKH >gi|197283007|gb|ABQU01000043.1| GENE 45 37985 - 38641 372 218 aa, chain - ## HITS:1 COG:jhp0255 KEGG:ns NR:ns ## COG: jhp0255 COG2121 # Protein_GI_number: 15611325 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori J99 # 9 218 3 205 217 166 41.0 3e-41 MANFFKNRMKILTRKILLALAPPLIFLLIKTLYFSCKIKYKIPKQTSDLITSNQNFIIAF WHGKLLMQPCLFSKLLKKKQRKTYVLISQHFDGDIISQTMRYFKIDSLRGSSSKGNVKVL LSSIRKLQENNFVAITPDGPRGPYHSIADGIIVLSQKSKKPIVISQIIYHNAWRLKSWDK FEIPKPFSKITYVLKEPLWVKDLDLENAKKYIHNQMGS >gi|197283007|gb|ABQU01000043.1| GENE 46 38625 - 39941 469 438 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229230948|ref|ZP_04355465.1| SSU ribosomal protein S12P methylthiotransferase [Desulfotomaculum acetoxidans DSM 771] # 1 437 17 460 462 185 27 5e-46 MSKKLFIETLGCAMNERDSEHIIAELEDKENYTLTQNPKEADLILINTCSVREKPEKKLF SEIGQYAKIKKENAKIGICGCTASHLGENILKRSKAVDFVLGARNVSKISQILHQGRVAW VDIDYDDSTYVFSNKQNSSLKGMINISIGCDKQCTYCIVPHTRGNEISIPTHLILDEAKK LADKGTKEILLLGQNVNNYGRRFSSPHRKINFTQLLREISEIDGIQRIRFTSPHPLHMDD EFIEEVAKNPKICKAIHMPLQSGSTKILQKMKRGYSKEWFLNRVEKMRSLIPHLSISTDI IVGFPTESEEDFLETLDVLEKVRFDTMYSFIYSTRPHTQAATWLENNEISLVDEEIAKNR LAILKDRHKEILTQDNAKQIGKIHSVLFESYDAQNMLLEGRSDTNKLIRVKAGRNLIGEI HSIRISETKGAQLIGELL >gi|197283007|gb|ABQU01000043.1| GENE 47 39963 - 40205 365 80 aa, chain - ## HITS:1 COG:no KEGG:WS1777 NR:ns ## KEGG: WS1777 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 80 1 80 80 95 68.0 5e-19 MDIKLVREHINDKPQKIAIKKLEEMLESKKGDIFYCDKENSHKDMMALIEYFEKKGKHVY FREVRYGLDEGDYMYEFHIL >gi|197283007|gb|ABQU01000043.1| GENE 48 40394 - 41389 1328 331 aa, chain + ## HITS:1 COG:Cj1293 KEGG:ns NR:ns ## COG: Cj1293 COG1086 # Protein_GI_number: 15792616 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate sugar epimerases # Organism: Campylobacter jejuni # 1 331 1 332 334 492 70.0 1e-139 MFNGKNILITGGTGSFGKQYTKTLLERYKPQKIVIFSRDELKQYEMAQVYNQPCMRYFLG DVRDESRLKEATNGIDYIIHAAALKQVPAAEYNPTECIKTNIYGAQNVIAAALANGVEKV IALSTDKAANPINLYGATKLASDKLFVAANNMAGSRKTRFSVVRYGNVIGSRGSVVPFFK KLIKEGAREIPITDIEMTRFMITLQQGVDFVLKNFERMKGGETFIPKIPSMKIIDVANAL APNLPHKIIGIRPGEKIHETMCPSDDSHITYEFEDYFVIAPTIQFNFITDFSVNALGESG KLVQRGFEYNSGSNTEWLSKEEFLELSKEIE >gi|197283007|gb|ABQU01000043.1| GENE 49 41386 - 42546 1156 386 aa, chain + ## HITS:1 COG:MJ1066 KEGG:ns NR:ns ## COG: MJ1066 COG0399 # Protein_GI_number: 15669255 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Methanococcus jannaschii # 2 380 7 379 386 275 37.0 1e-73 MIPYGKQEILKEDIDSVVEVLQSPLITQGPKAIEFEEKIATKVDAKYAVSFNSATSALHC AVLALGLREGEWLWTTPISFVASSNCGLYCGAKVDFVDIDKKTYNLSVELLEEKLKRTKK HKLPKVLVAVHFGGQSCDMEKIWELSKKYGFKVIEDASHALGGKYRTYPIGNCKFSDITI FSFHPVKIITTAEGGVATTNNPKYAKKMQMLKSHGITKEAIDFENKKKPSPWYYEQQILG YNYRLSELHAALGISQLKRLDSYIQRRNELAKIYSKNLKDLEITLPFVETYNYSAFHLYV ILLNKKSGIKQRELYQKLIEAGIAPQVHYIPIHLQPFYARFGFKKGDFKNAEKYYKNTLT LPLYPTLSQEEQNKVIEVLRSNLACK >gi|197283007|gb|ABQU01000043.1| GENE 50 42537 - 43217 529 226 aa, chain + ## HITS:1 COG:Cj1311 KEGG:ns NR:ns ## COG: Cj1311 COG1083 # Protein_GI_number: 15792634 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: CMP-N-acetylneuraminic acid synthetase # Organism: Campylobacter jejuni # 6 220 4 226 232 187 47.0 2e-47 MQVDCICIIPARGGSKRIPRKNLKDFLGKPIIAYSIENAKKSKIFSKVYVSSDDEEILQI AKELGVLPLKRPKSLSGDFVGTREVIIHCIKELNLKEEWVCCLYATAPLLEAARLQEAFL QRDDSCYLLSALEYSYSPFRAFRIEGGRNKMLFAEHFMKRSQDLEKIYHDAGQFYFARAK IWEERENIFEDSKSFLLPSQEVQDIDTLQDWHEAELKYQLLKQKEE >gi|197283007|gb|ABQU01000043.1| GENE 51 43198 - 44562 1065 454 aa, chain - ## HITS:1 COG:jhp0267 KEGG:ns NR:ns ## COG: jhp0267 COG3400 # Protein_GI_number: 15611337 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori J99 # 2 453 16 477 478 276 33.0 7e-74 EFASTITNKYFNKNYYIFVSLDKNLLPTNQTEYYETYQFDPCSSRKLKEILSPQITDCYI ITDQKEDREIIYNIIRSYSKNIQITMLGEFSPLTEDKQLNMICEYNVLSAKLFEKFPNVP RTAKYIGLGQGEIMQISVPFGSPYAYRSVGAIKQKKWKIAAIYRNNEMILPKYSTTIFPN DSLLLVGDPTTLWDIYHRIKEEIGQFPTPFGRDVVLYFDLTQSASLDSYIMQTLWLFDNF KNKRLHLCFFNPSSFEDIEKIKNLPQLDKKNISWHIEFYETSLKNIINKDKNSKNIGLIL LDNFLFDHHKGFLFDLGIPLLKFGNSSLQNLTHSVVILPKNLEEAEKISSVVFDFSTQLG LKIRLYDFDPDSHYHEQAIDYYRHIEKVFEKKVELIQSDTINPIIWLNRQEHTLQILPLK KEVLQKSLWFSLTEVENLSMRLSNIPQLFIPLSV Prediction of potential genes in microbial genomes Time: Tue May 24 02:23:57 2011 Seq name: gi|197283006|gb|ABQU01000044.1| Helicobacter pullorum MIT 98-5489 cont2.44, whole genome shotgun sequence Length of sequence - 15728 bp Number of predicted genes - 13, with homology - 12 Number of transcription units - 5, operones - 4 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 12 - 71 9.2 1 1 Op 1 . + CDS 94 - 1227 972 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase 2 1 Op 2 . + CDS 1304 - 1522 195 ## gi|224417641|ref|ZP_03655647.1| hypothetical protein HcanM9_00040 3 1 Op 3 . + CDS 1571 - 1981 331 ## gi|242309681|ref|ZP_04808836.1| LOW QUALITY PROTEIN: conserved hypothetical protein 4 1 Op 4 . + CDS 1994 - 3739 1594 ## CJJ81176_0082 hypothetical protein - Term 3661 - 3693 -0.8 5 2 Op 1 . - CDS 3761 - 4744 1040 ## gi|242309683|ref|ZP_04808838.1| predicted protein 6 2 Op 2 . - CDS 4764 - 4952 199 ## - Prom 4977 - 5036 7.6 - Term 5423 - 5462 0.1 7 3 Tu 1 . - CDS 5471 - 7540 2579 ## COG4771 Outer membrane receptor for ferrienterochelin and colicins - Prom 7608 - 7667 8.7 + Prom 7554 - 7613 12.9 8 4 Op 1 13/0.000 + CDS 7787 - 9040 1266 ## COG1538 Outer membrane protein 9 4 Op 2 27/0.000 + CDS 9037 - 9789 792 ## COG0845 Membrane-fusion protein 10 4 Op 3 . + CDS 9789 - 12842 2764 ## COG0841 Cation/multidrug efflux pump + Prom 12844 - 12903 5.4 11 4 Op 4 . + CDS 12928 - 13152 489 ## gi|242309690|ref|ZP_04808845.1| predicted protein + Term 13161 - 13197 3.7 + Prom 13170 - 13229 6.7 12 5 Op 1 1/0.000 + CDS 13258 - 15111 2192 ## COG1166 Arginine decarboxylase (spermidine biosynthesis) 13 5 Op 2 . + CDS 15113 - 15728 538 ## COG1045 Serine acetyltransferase Predicted protein(s) >gi|197283006|gb|ABQU01000044.1| GENE 1 94 - 1227 972 377 aa, chain + ## HITS:1 COG:HP0281 KEGG:ns NR:ns ## COG: HP0281 COG0343 # Protein_GI_number: 15644909 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Helicobacter pylori 26695 # 1 371 1 362 371 486 62.0 1e-137 MEFNLQKNDGNARAGILKLAHGEVQTPIFMPVGTQACVKALDFADLLALDAPIILANTYH LYLRPGAEIIGELGGLHNFSKFPRNFLTDSGGFQAFSLSDNVKVSEDGILFKSHIDGSKH FFTPKKVLDIQYHLNSDIMMILDDLVGLPASKERIKQSINRTTQWAREAISYHNFKKIQA KESGVKLTNNIFAINQGGTDREFREASARDLTSMGDFDGYAIGGLAVGEPNKQMYETLDF TTPLLPRDKPRYLMGVGTPQDIVEAIARGVDMFDCVMPTRNARNGTIFTHFGKLSIKSSR FKLDTNPLDCKCHCYTCQNFSRAYLHHLFRAGEMSYFRLASIHNLAYYLDLVREAREAIL QGKFIEFYKRFYSDLEN >gi|197283006|gb|ABQU01000044.1| GENE 2 1304 - 1522 195 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417641|ref|ZP_03655647.1| ## NR: gi|224417641|ref|ZP_03655647.1| hypothetical protein HcanM9_00040 [Helicobacter canadensis MIT 98-5491] # 8 72 1 66 222 70 57.0 2e-11 MLWGGGVMLEWSNEFSVKNAYLDNQHKQLFQYVADAYNLTKNGVKNKESLLLLINKILEY SKEHFRDEESYM >gi|197283006|gb|ABQU01000044.1| GENE 3 1571 - 1981 331 136 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309681|ref|ZP_04808836.1| ## NR: gi|242309681|ref|ZP_04808836.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] # 1 136 17 152 152 240 100.0 2e-62 MIATIHKIRANLGDSQKDSIEVYSFLKNWLLKHILQEDKKIEAYRSRLIDINEIPYTLEQ QTQILAQTYNVQQEQQHIYICLCPLKEFEVCDTLHKSMQINQTLLRCKTCKQPLVFKDIK LDDEKHFDALAKKYFH >gi|197283006|gb|ABQU01000044.1| GENE 4 1994 - 3739 1594 581 aa, chain + ## HITS:1 COG:no KEGG:CJJ81176_0082 NR:ns ## KEGG: CJJ81176_0082 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_81-176 # Pathway: not_defined # 32 580 33 622 622 138 25.0 8e-31 MVFVSRGYEIFENVSNISQLLEEQKEVYGEEIDFYLLAYETFYSKHNENQFKYVHNNNVF NKNSNYIANIDIKQVYKIEICRKKDKEKSPFSFQLIEQQDTLLRASLECRGGIAYYEGMK FDIYQELYKTMILEGYFIGIREYNKLSSQIDLFVRNIKENNPTYRVFLDIGSGVANQEGK SEELKIYHTMQDINFNHQKSEGFIPKVSIKVVRKGDLLFDYIKPTKGHIGRDLKGNILPI APVSIHDIQVDSSIVALEGISNIKFHARKDGFLKEIRPYSFIVDDELDAKKREVDNSIKV LNIDGLTHSDSKIQADVAYIGSHRGNIQAQKVVIDVLERGAVEAKVAYINSSLGGKIIAD YVYIKNLHSYNEIYFRKCLVVDNVAGEHNIFECNPARIAFAKKDRVEYMMLEKQLQTKIK HLRKRMDEIYTYLLISQGKVHKILQDNSIEQLPKNLRSVVEQYEKSLNTYQKLLLEYSDI VNLNYANKTRLKSIDEMALGARIIIRGNFPNGESLIRFNLYEGNSVQKTLKATLNQQNLY RLFEVASKDGRFSVANSSEYNPKYCDWISEFFPRENEKNSF >gi|197283006|gb|ABQU01000044.1| GENE 5 3761 - 4744 1040 327 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309683|ref|ZP_04808838.1| ## NR: gi|242309683|ref|ZP_04808838.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 327 1 327 327 553 100.0 1e-156 MLIHNADKILFRKIYFAANNHKESTLAQEEIQSLKPNQESPQDSTKISIKNKLTNDSSYQ LVMFEDGISGDKVQALLSKENIQRLQEKFDKSDFYTRDDGILRLSGKAESYVSGWHGEIA YNMGAFNADLNKDGKFSPQENALIKDDYTFLMAEKSTIYGDSINIYGVESYIAKPPTNQQ TKTLDDLLDGLISADMDLNGKVTLKEHLKNTEGSLYTAIKEILNSQVNPLENLNPTQEIK TPKQRVLEEISKQEAMALLAKIKQNGNLESLSPKEKEALQKYFSNEMQRIKQEKNDLETT NKHLNEAIQNFSEQILSKESLIFETKA >gi|197283006|gb|ABQU01000044.1| GENE 6 4764 - 4952 199 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKAIFFTILLLANLLNAAQITNKTTKSTLSNHQTHLETSKIIYPSQPRCIKMKLGAVVCF PK >gi|197283006|gb|ABQU01000044.1| GENE 7 5471 - 7540 2579 689 aa, chain - ## HITS:1 COG:Cj0755 KEGG:ns NR:ns ## COG: Cj0755 COG4771 # Protein_GI_number: 15792094 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferrienterochelin and colicins # Organism: Campylobacter jejuni # 5 689 2 696 696 357 35.0 4e-98 MKIKKNISYVSVALSLMWSGIYANAAEQYLLDTSVVSASGFAQDVKDAPASISVITKEEL ESRPVQDIADAISDIPGVNITRGKTGTYDFTIRGFGTGYTLVLVDGKRQNTVNGFHENGF SGVDNSYLPPISMIERIEVIKGPASTLYGGDAIGGVVNIITKKNPDKFTGSISIETQAQQ HYNLYGNSRGVTGYMAFPLIQDKLSLSLRGKYFGKDQSNLKWPAKNLTNPYASHSPGEYK IGNVGARLNWTINDQNNLYLDGEHYHQYSDTMNTSGRQRRSISAFDRNGLVLNHDGYYTW GTTNTYAQYQYTDQTSKSGTPVANESTVYVVESKAVMPFDFNTFGSVMLSTGVQYQWEGF RNDNENNIDKGKTLEQNIIAPYAEAEYSITENLILTGGLRYTYSDLFEGEFIPRGYLVYH LTDWVTLKGGVAKGYKTPQAKQLSDGVYRVDNGDIHGNSKLNPETSTNYEIGAIFDVWDY GNLSITAFQTDFKNSIDQDPYANGESMPNGQICSGGTDGCKLVVNRGKDRARGVEVGMDT ATWNGFSANVSYTYMEKHDKSGDYTNPWGGTRYTNLPRHIAVVKLNYTKGKFSSFLKATG RYDTLAQSKGGSGRAIPGMMKYKDFYILDLGFSYKMTQNSTINFVINNLLDKDFFEPYRY EGSKGTSYANRFQDYTEGRNFWINYKLDF >gi|197283006|gb|ABQU01000044.1| GENE 8 7787 - 9040 1266 417 aa, chain + ## HITS:1 COG:jhp0552 KEGG:ns NR:ns ## COG: jhp0552 COG1538 # Protein_GI_number: 15611619 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Helicobacter pylori J99 # 55 417 119 476 477 133 26.0 7e-31 MRRGIRILLFLCCFALSGYAESLKFLVGNIKNNPLLNAKIYQKQSLHEEKKGLYALYLPK VEVGYAYQNTHNPDIFYPANVNGPFVEATWLLFDGLKREGKLKAQNDRIKSSEFAIQSTQ QQLILQVIQKYFGALSLQSRKKAVLRQQEELQQSIAKYETLYHSGLATQDTLEAIKAQYA QNSYQIENIELALESYKEQLSLLSGIENPSLEEYTKIKEIDLQTKPKDRADLQAQFHYVK SLESVPMQHSYLPTIALSNRYMHYEYHNRNIPTLPFPFSIDNPKYQNIFGISISLTLFDT FATYRAKEVAHLQALAANFEYSYQKDSQRREQIIAKNALNTAKEKIKWADSALTSASIAY AYAKDKFNAQLIDYTQYLGALTTFFEAQSFYDESLFEYEIKKAEFLYNNGENLEEFL >gi|197283006|gb|ABQU01000044.1| GENE 9 9037 - 9789 792 250 aa, chain + ## HITS:1 COG:jhp0553 KEGG:ns NR:ns ## COG: jhp0553 COG0845 # Protein_GI_number: 15611620 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Helicobacter pylori J99 # 20 247 19 231 234 150 40.0 3e-36 MRKIAKSLMALCIFGVSLFGEGIYATFSIKAVQSATLSLASSGVVESVFVEIGDNVKKGQ KLLELKAKDLQENVKIALATLESAKAEHLFLEAQYQRYKHSQNVIDKNTFEKIQTQYQSS VFGLKKAKAHYQLQKELLDKTILYAPFNGVIVDKFVEVGDGVGAISSKLFVLESKQKKAI IEFDSQYFNQVKVGDKFLYKIQNQEQKIPLVLTKIYPSIDKDTKKAKAEAVFENIDLPSG IFGDGLIVRE >gi|197283006|gb|ABQU01000044.1| GENE 10 9789 - 12842 2764 1017 aa, chain + ## HITS:1 COG:HP0607 KEGG:ns NR:ns ## COG: HP0607 COG0841 # Protein_GI_number: 15645232 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Helicobacter pylori 26695 # 1 1017 1 1022 1028 934 50.0 0 MSKIAISRPIATLMFVLALVFFGIDALKRLSVSLYPNVDIPIITITTFYPGANPEIVESK VTEKIEEAISGIDALKKITSTSSQNVSVVVAEFELEKSIEIAANDVRDKVSTISFGSEVK SPIIEKFDVGGTPIISLFVSSKTPISSTKELLELNTHTNLNIKPLLQRIAGVGKVNLVGF LEREIRILPNPTMLSKYNLSYLDVAQAIKAQNIEIDGGRIIDSKQEWTILTKADAENIQE LGDLLIAKGIKLSDIAVIEDAMQEQRSFSYLHSKDIQSGGILLEIQKITGANEIEITKAI KEIMPYLEQISPKYHLTLLRDTTTYIQDTIDAVEFDLILGAFLAVFVVFFFLRNVSITLV SSLSIPASIMGAFAFMYIFGMTLNLATMIAITLAIGIIIDDAIVVIENIYKKLEMGISMR EAALMGVQEIGFALIAISAMLLSVFIPIANMSGITGRFFVSFGLTLAASIIISYFVVITF IPMLSSRIAQRKQSNFYLQTEKYFKGLESFYVRILEWVLAHRAFVVISILGIFVASLLLV MRLGVEFLPSEDKAEFDIKLTAKPGISLEEMQYQTLAIQERLNQESEVEYSLLNIGYTSE QKVYEGKIYVRLSPYNKRERGLQEIIEFLREVYKPYAEKFGLEIALIEIPQISLGEDDSP LQLALYALDNDALQKSVERIIGFMEQSGKFRDIHTNIKPPTPQLRLSINRALANQYGLSA QEIALAINSAFSGMQEISYYRENGREYDIVLLTPQRRSIEDLKKLTLRNARGENVFLEGM VEIKEIDAVTSIRHYDRQKSVMVYANLTNGVSLGEATNLLESNRDSWLGESVHYKIEGYA KYMQETNAAFVTAMIMGFVLIYFILAALYESLIQPFIIMVALPLSFTGAFLALFLSGESL SLFSIMGLMLLMGLVGKNATLIIDVANAKRQEGIELKRAILEAGESRLRPILMTTIAMIF GMLPLALAGGAGSGIKSPMGIAMIGGLLVSMILSLLIVPAFYSLLASIDDKMRSYYQ >gi|197283006|gb|ABQU01000044.1| GENE 11 12928 - 13152 489 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309690|ref|ZP_04808845.1| ## NR: gi|242309690|ref|ZP_04808845.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 74 1 74 74 84 100.0 2e-15 MNPISGSTYYGYDAFSNAQSGIDANMRSATLETSNTDITQSTVNTMNAQNGVEANAQTIQ TADSMMQSALDILA >gi|197283006|gb|ABQU01000044.1| GENE 12 13258 - 15111 2192 617 aa, chain + ## HITS:1 COG:HP0422 KEGG:ns NR:ns ## COG: HP0422 COG1166 # Protein_GI_number: 15645050 # Func_class: E Amino acid transport and metabolism # Function: Arginine decarboxylase (spermidine biosynthesis) # Organism: Helicobacter pylori 26695 # 3 610 6 614 615 870 71.0 0 MVDYGINYWANDDFIIEDGKVKVNFCNKPALIDIVKQVREEGYRGPLLVRFPHLIKKQVE KIFSHFENSIKEYHYKGKFKAVFPIKVNHFPNFILPLMEQTQNRCYGLEAGSKSELIIAM AYTNENAPITVNGFKDKEMISLGFIAAKMGHDITLTIEGLNELETIIEVSKSMGKPYPNI GLRIRLHSTGVGIWAKSGGINSKFGLTATELVEAIYLLKKNKLLDKFTMIHFHIGSQISD IAPLKKALREAGNIYAELRKMGAKNLNNVNIGGGLAVEYTQHEAHQNRNYTLGEFSGNVI FTLKEIAKNKKEPEPNIFIESGRYVSANHAVLISPVLELFSQEYDEKALHLKEKNPPLVE ELLDLYNTIDERSAIEYLHDSLEHMESLLTLFDLGYIDLQDRSNTEVLVHLIIKKVIKIL KHKNHSDIIRIQEQVQERYLLNCSFFQSLPDYWGLKQNFPVIPLDRLNKRPTRSASLWDI TCDSDGEIAFDKNYPLFLHDIDVNSEEYFLGFFLVGAYQEVLGMRHNLFTHPTELSVVFN QEEGSFEIENLLEAQTILDVLDDLDFDTKEIERRLKQKLDESEEIPQDEKKEVLGQLYVM LSENGYLRTVFKSQGEV >gi|197283006|gb|ABQU01000044.1| GENE 13 15113 - 15728 538 205 aa, chain + ## HITS:1 COG:Cj0763c KEGG:ns NR:ns ## COG: Cj0763c COG1045 # Protein_GI_number: 15792101 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Campylobacter jejuni # 6 185 2 182 212 202 55.0 4e-52 MSYANSLFGTIKEDFGVILQKDPAINSKIELFFNYPGLIALVHYRIAHKLHLKGFRVLAR ILMGFTQWITNIDIHPACKIGHRVFIDHGIGVVIGETAEVGNEVTIYQGVSLGGVSLEKT KRHPTIEDNVIIGAGAKILGNITIGANSKIGANSVVIASVPPNSTAVGIPARTIIKGKSN DLNKIPDIQLQLFTYLQKRLELLES Prediction of potential genes in microbial genomes Time: Tue May 24 02:24:37 2011 Seq name: gi|197283005|gb|ABQU01000045.1| Helicobacter pullorum MIT 98-5489 cont2.45, whole genome shotgun sequence Length of sequence - 5021 bp Number of predicted genes - 6, with homology - 5 Number of transcription units - 3, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 86 64 ## + Term 293 - 331 2.3 2 2 Op 1 3/0.000 - CDS 92 - 559 430 ## COG0666 FOG: Ankyrin repeat - Prom 580 - 639 3.8 3 2 Op 2 . - CDS 646 - 2070 1391 ## COG0753 Catalase - Prom 2110 - 2169 8.7 + Prom 2078 - 2137 12.5 4 3 Op 1 . + CDS 2297 - 2872 593 ## COG2703 Hemerythrin 5 3 Op 2 . + CDS 2888 - 4807 1962 ## COG0021 Transketolase 6 3 Op 3 . + CDS 4811 - 5021 135 ## gi|224417727|ref|ZP_03655733.1| hypothetical protein HcanM9_00476 Predicted protein(s) >gi|197283005|gb|ABQU01000045.1| GENE 1 3 - 86 64 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no IPHSEELQVSIEKLNLIYYEFLKSRRE >gi|197283005|gb|ABQU01000045.1| GENE 2 92 - 559 430 155 aa, chain - ## HITS:1 COG:Cj1386 KEGG:ns NR:ns ## COG: Cj1386 COG0666 # Protein_GI_number: 15792709 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Campylobacter jejuni # 1 155 1 155 156 226 79.0 1e-59 MNEISLEEEKRFGELCNMAFNFARNNEFENLRIMIEAGLNVNLKTHRGDTLLMLAAYNNS LETAKMLLEKGAKVDEKNDRGQTPLAGVCFKGYLDMAKLLVSNGANIDENNGLGMTPFSF AIMFGRKDVARYLMIHSKQSLFKKISFLILNLLKK >gi|197283005|gb|ABQU01000045.1| GENE 3 646 - 2070 1391 474 aa, chain - ## HITS:1 COG:Cj1385 KEGG:ns NR:ns ## COG: Cj1385 COG0753 # Protein_GI_number: 15792708 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Campylobacter jejuni # 1 474 1 474 474 830 86.0 0 MKKLTNDFGNIVADNQNSLSAGPKGPLLLQDYILLEKLAHQNRERIPERVVHAKGSGAYG ELKITADISQFTKAKVLQKGEVTPLFLRFSTVAGESGAADAERDVRGFAIKFYTKEGNWD LVGNNTPTFFIRDPYKFPDFIHTQKRDPRTNLRNANAAWDFWTLCPEALHQITILMSDRG IPASYRHMHGFGSHTYSLINDKGERFWVKFHFKTQQGIKNLTNKEAEEIIAKDRESHQRD LYNSIEKGDFPKWTFQVQILPENEVDKLGFNPFDLTKVWPHSIVPLMDIGEMILNKNPQN YFNEVEQAAFSPSNIVPGIGFSPDKMLQGRIFSYPDAHRYRVGTNYHLLPINRARSEVNT YNVAGAMNFDEYKNKSAYYEPNSYDDSPKEDKNYLEPDLNLEAAAQRYAPLDNDFYTQPK ALFDIMNDSQKEQLFNNIASSMEGVEQKIIDKALIHFEKISKEYAEGVKKALSK >gi|197283005|gb|ABQU01000045.1| GENE 4 2297 - 2872 593 191 aa, chain + ## HITS:1 COG:Cj1224 KEGG:ns NR:ns ## COG: Cj1224 COG2703 # Protein_GI_number: 15792548 # Func_class: P Inorganic ion transport and metabolism # Function: Hemerythrin # Organism: Campylobacter jejuni # 1 191 1 197 199 161 42.0 7e-40 MLPSWSKELSVHNEAIDEQHKKLFEIAGRAYALTNKKATKEEIITILRELLNYTQEHFKD EEAYMESIYYPRLIQHKERHREIIRDMTSAVMQIRNVDDLKEQLAVIAKKWLLEHIIRED MQIEKFRRSTCQITPQETKVKNIVEESKVQYTCNCQGKVHLVPLELHNKIQKENVIFNCK TCKGRIKLLEQ >gi|197283005|gb|ABQU01000045.1| GENE 5 2888 - 4807 1962 639 aa, chain + ## HITS:1 COG:HP1088 KEGG:ns NR:ns ## COG: HP1088 COG0021 # Protein_GI_number: 15645702 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Helicobacter pylori 26695 # 2 639 3 639 641 797 60.0 0 MLDKNEINEYQLMADSLRFLCADMVQAANSGHPGAPMGLADIAVVLGYHLKINPKNPNWI NRDRLVFSGGHASALVYSLLHLWGFDVSLEDLKSFRQFGSKTPGHPEYKHTPGIEITTGP LGQGIANAVGFAMAGKLAQNMLGDLISHKVYCLCGDGDLEEGISYESCSLAGHHKLDNLV VIYDSNNITIEGECEVALSENMQLRFESQGWEVLQIDGHNFMQIDAALTQAKTSKKPVLI IAKTTIAKGSLHLSGSHKSHGSPLGETEIAESKKALGFNPDEKFFIPESAKIRFKNTQEL GELANKEWEKTLEKSDKKDILREMLNPNFSKIEYPIFDESKSIATRSSNGEILNAIAKAL YGFIGGSADLAPSNNTELKGMGDFPKGRNFHFGIREHAMGAISNGLANYGLFLPFCATFF VFSDYLSPSVRVASLMKNKVFYIWTHDSIGVGEDGATHQPIEQLSHFRAMPNLNVFRPSD ANENVACWQTAFEIEGPCAFVLSRQNLPVLSPIAKEQVKKGAYIKKPSKKEAQVTLLATG SEVALALKSAEKLEENGIDVQVVSVPCYDLFIQQDRNYKDSLLQGLVVAIEASRGLEWYA LADIVVGMQNFGASGKGEMLFEHFGFNVANIVKIVKENL >gi|197283005|gb|ABQU01000045.1| GENE 6 4811 - 5021 135 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224417727|ref|ZP_03655733.1| ## NR: gi|224417727|ref|ZP_03655733.1| hypothetical protein HcanM9_00476 [Helicobacter canadensis MIT 98-5491] # 1 70 1 70 743 96 72.0 5e-19 MEKLYLFSNTRAIKDFFERNYNASFLPSAQSIGEFFDSILRVEAKSKIPPFLRYVYLYQA IKEVNPQKFG Prediction of potential genes in microbial genomes Time: Tue May 24 02:24:46 2011 Seq name: gi|197283004|gb|ABQU01000046.1| Helicobacter pullorum MIT 98-5489 cont2.46, whole genome shotgun sequence Length of sequence - 2675 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 2032 1469 ## COG3893 Inactivated superfamily I helicase + Term 2117 - 2153 1.2 - Term 1756 - 1792 -0.1 2 2 Tu 1 . - CDS 2007 - 2504 483 ## HH1706 hypothetical protein - Prom 2527 - 2586 8.5 Predicted protein(s) >gi|197283004|gb|ABQU01000046.1| GENE 1 2 - 2032 1469 676 aa, chain + ## HITS:1 COG:Cj1482c_1 KEGG:ns NR:ns ## COG: Cj1482c_1 COG3893 # Protein_GI_number: 15792797 # Func_class: L Replication, recombination and repair # Function: Inactivated superfamily I helicase # Organism: Campylobacter jejuni # 3 410 76 529 548 191 31.0 5e-48 KNFSQFLVNSDFFFKFYDELCAECVQIESLERLDIYAFYDDHLQVLKNIFKTYQDKIAQN GFFDKYFLENYQITFELLLQFDEIEVHLEGFLSRFEMYVFKEISMQKPIVFKISINAFNQ EYYQRIFGIELENGDFILHLKKSDIKKDSFEPTKTIKYGKINLLEFSDRVSEVGGIFSQI DLWLERGIQPEEICIVLPSEEFKNYLELFDGARNFNFAMGKKLQETALFVKIEEHIEQFK DFGEFQNFIIESQEITREDKEAKKIILQNLEHFSYSLKYLEFLPIKDKIHTFFMMLKKLS IDDIGGGRISVIGILETRGIEFSYIIVPEFNENNVPKVNQKDIFLNSLIREKVGLPTKKD RENLQKYYYSRLFEHSLEVGVMFLNNDEDKPSRFLLDDKIFSEARFYKASKKYGDYFLSG KALQYKEREIVAPLELGIMSASKLECLLTCARKYYYRYVLGYKEENSNMGANVGMKLHKV LQEAYSSYQTHHNFAQLQEEVYRGLQDYETKREFFELELAKRYLQKFFKTEQEHLQEGWI PVEFERKFSFGVCGIPFEGRIDRIDKKGQDFFVLDYKYKRNLKIGSKRSIENSKDFQLVL YAMAIQEIHSNAEVKAGFYDIYEAKIKEEKALIEKKEKLEERLEYYKGMQKEFSFELCKE RSPCSFCEFIYLCKRY >gi|197283004|gb|ABQU01000046.1| GENE 2 2007 - 2504 483 165 aa, chain - ## HITS:1 COG:no KEGG:HH1706 NR:ns ## KEGG: HH1706 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 13 146 13 149 170 101 48.0 1e-20 MRNPHFYSFAFMVYLLLIGLALGAIIASAFSAPVIFRAASFVEGLEITLFQSGVLMTQIF IKLNILLNILAVFIIIYEVIIFKTTRQKIAPLLGFISVILILLFTLYYTPYILQAQQMGE ESIQTLKFDAMHKQSVLVFKTLLITLFLLFCIRSYKLINNAYKGK Prediction of potential genes in microbial genomes Time: Tue May 24 02:25:04 2011 Seq name: gi|197283003|gb|ABQU01000047.1| Helicobacter pullorum MIT 98-5489 cont2.47, whole genome shotgun sequence Length of sequence - 46489 bp Number of predicted genes - 49, with homology - 49 Number of transcription units - 21, operones - 9 average op.length - 4.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 1076 - 1135 9.0 2 2 Tu 1 . + CDS 1350 - 1736 377 ## gi|242309699|ref|ZP_04808854.1| predicted protein + Term 1812 - 1850 0.5 3 3 Tu 1 . + CDS 2067 - 2279 275 ## gi|242309700|ref|ZP_04808855.1| predicted protein 4 4 Tu 1 . + CDS 2347 - 3243 891 ## PSR_61030 conserved hypothetical protein containing fibronectin, type III domain + Term 3395 - 3441 -0.6 - Term 3204 - 3257 2.2 5 5 Tu 1 . - CDS 3325 - 3591 103 ## gi|242309702|ref|ZP_04808857.1| predicted protein - Prom 3617 - 3676 4.7 - Term 3673 - 3720 7.2 6 6 Op 1 . - CDS 3750 - 3899 192 ## gi|242309703|ref|ZP_04808858.1| predicted protein 7 6 Op 2 . - CDS 3902 - 4114 279 ## gi|242309704|ref|ZP_04808859.1| predicted protein - Prom 4143 - 4202 6.8 - TRNA 4238 - 4314 94.2 # Asp GTC 0 0 - TRNA 4320 - 4395 95.5 # Val TAC 0 0 - TRNA 4426 - 4500 63.3 # Glu TTC 0 0 - TRNA 4513 - 4588 86.5 # Lys TTT 0 0 - Term 4415 - 4462 1.3 8 7 Tu 1 . - CDS 4632 - 5687 240 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase - Prom 5931 - 5990 10.5 9 8 Op 1 . + CDS 5770 - 6639 968 ## COG2326 Uncharacterized conserved protein 10 8 Op 2 . + CDS 6712 - 8094 1215 ## COG1823 Predicted Na+/dicarboxylate symporter + Term 8104 - 8134 1.2 + Prom 8161 - 8220 7.4 11 9 Tu 1 . + CDS 8281 - 10386 2224 ## COG0840 Methyl-accepting chemotaxis protein + Term 10465 - 10497 -0.7 + Prom 10390 - 10449 6.8 12 10 Op 1 . + CDS 10517 - 11443 234 ## PROTEIN SUPPORTED gi|163756109|ref|ZP_02163225.1| 30S ribosomal protein S1 13 10 Op 2 . + CDS 11446 - 12840 1266 ## WS0208 hypothetical protein 14 11 Op 1 3/0.000 - CDS 12817 - 13224 350 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 15 11 Op 2 . - CDS 13224 - 13985 651 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 16 11 Op 3 . - CDS 13972 - 16116 2082 ## WS1882 hypothetical protein 17 11 Op 4 . - CDS 16169 - 17185 709 ## COG2861 Uncharacterized protein conserved in bacteria 18 11 Op 5 22/0.000 - CDS 17192 - 17428 354 ## COG0851 Septum formation topological specificity factor 19 11 Op 6 . - CDS 17425 - 18243 821 ## COG2894 Septum formation inhibitor-activating ATPase 20 11 Op 7 . - CDS 18287 - 18883 359 ## COG0164 Ribonuclease HII 21 11 Op 8 3/0.000 - CDS 18888 - 21305 2671 ## COG0466 ATP-dependent Lon protease, bacterial type 22 11 Op 9 . - CDS 21315 - 21983 559 ## COG4105 DNA uptake lipoprotein - Prom 22076 - 22135 12.8 + Prom 22098 - 22157 9.3 23 12 Op 1 1/0.111 + CDS 22245 - 22676 463 ## COG1699 Uncharacterized protein conserved in bacteria 24 12 Op 2 . + CDS 22689 - 23429 834 ## COG0345 Pyrroline-5-carboxylate reductase 25 12 Op 3 . + CDS 23426 - 24316 789 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 26 12 Op 4 7/0.000 + CDS 24394 - 25752 1424 ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] 27 12 Op 5 . + CDS 25742 - 27565 1166 ## COG3276 Selenocysteine-specific translation elongation factor 28 12 Op 6 . + CDS 27559 - 28563 824 ## WS0836 NifS protein 29 12 Op 7 . + CDS 28567 - 29796 1052 ## COG0303 Molybdopterin biosynthesis enzyme + Term 29821 - 29866 3.0 30 13 Tu 1 . - CDS 29830 - 30078 290 ## SUN_2442 XRE family transcriptional regulator - Prom 30099 - 30158 6.8 + Prom 30082 - 30141 7.3 31 14 Tu 1 . + CDS 30183 - 30977 674 ## COG0500 SAM-dependent methyltransferases + Term 31067 - 31112 -0.5 - Term 30923 - 30966 5.1 32 15 Op 1 1/0.111 - CDS 30983 - 31666 813 ## COG0284 Orotidine-5'-phosphate decarboxylase 33 15 Op 2 17/0.000 - CDS 31663 - 32109 513 ## COG0781 Transcription termination factor 34 15 Op 3 3/0.000 - CDS 32109 - 32579 595 ## COG0054 Riboflavin synthase beta-chain 35 15 Op 4 2/0.111 - CDS 32590 - 33387 805 ## COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase 36 15 Op 5 . - CDS 33391 - 34026 642 ## COG0288 Carbonic anhydrase 37 15 Op 6 . - CDS 34036 - 34812 715 ## COG1360 Flagellar motor protein - Prom 34840 - 34899 10.5 + Prom 34820 - 34879 11.7 38 16 Tu 1 . + CDS 34907 - 35524 565 ## PROTEIN SUPPORTED gi|154175107|ref|YP_001408238.1| ribosomal protein L22 + Term 35678 - 35708 -0.5 39 17 Tu 1 . - CDS 35508 - 37295 1752 ## COG1283 Na+/phosphate symporter - Prom 37321 - 37380 7.8 + Prom 37356 - 37415 6.7 40 18 Op 1 . + CDS 37465 - 38679 1110 ## COG1252 NADH dehydrogenase, FAD-containing subunit 41 18 Op 2 . + CDS 38719 - 39465 366 ## COG4422 Bacteriophage protein gp37 - Term 39416 - 39447 -0.1 42 19 Op 1 29/0.000 - CDS 39466 - 41346 2839 ## COG0443 Molecular chaperone 43 19 Op 2 . - CDS 41368 - 41910 719 ## COG0576 Molecular chaperone GrpE (heat shock protein) - Prom 41984 - 42043 9.3 + Prom 42021 - 42080 8.0 44 20 Op 1 . + CDS 42189 - 42980 789 ## COG0739 Membrane proteins related to metalloendopeptidases 45 20 Op 2 . + CDS 42993 - 43595 687 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 46 20 Op 3 32/0.000 + CDS 43657 - 44616 925 ## COG1135 ABC-type metal ion transport system, ATPase component 47 20 Op 4 22/0.000 + CDS 44627 - 45277 629 ## COG2011 ABC-type metal ion transport system, permease component 48 20 Op 5 . + CDS 45299 - 46114 1036 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Term 46120 - 46161 4.3 - Term 46107 - 46149 6.1 49 21 Tu 1 . - CDS 46161 - 46487 328 ## COG0036 Pentose-5-phosphate-3-epimerase Predicted protein(s) >gi|197283003|gb|ABQU01000047.1| GENE 1 1 - 1021 797 340 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224419211|ref|ZP_03657217.1| ## NR: gi|224419211|ref|ZP_03657217.1| hypothetical protein HcanM9_08053 [Helicobacter canadensis MIT 98-5491] # 1 340 1 340 372 498 98.0 1e-139 MQINTSNYLNLYSNSYNINSKESTQSISQNFNTTENLSQNNKNNVERDTKQIISEILSNK EELPAYISHSYHQNIDNIEKLQNLAQAHLQFIETYNGVIPTELEAKQSIQFLMQEAEEIL SVAYNKQPNSEEFRNLLGIFSFAQDSINDFSNNKQKLLNLLKQGQSSLEYATSDEFYHKL FTKANGPNTQTLEEIDRLSKINEEQGFLRDYNVNATLISSYLQDFFTMANDFGFISKDKE NKIYQELQTSVIYLGSQGGNIGNSFKIENFTISWEGNSTLFNAYLNGSKISIASQSTPND FLASLASNFDTTQSIFDILNQKEKLEKENQDLKSKQAIEA >gi|197283003|gb|ABQU01000047.1| GENE 2 1350 - 1736 377 128 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309699|ref|ZP_04808854.1| ## NR: gi|242309699|ref|ZP_04808854.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 128 1 128 128 207 100.0 2e-52 MALLEFASLGNIKGNIIPEFFAKLATNGIPQQLFQQALNYNLAMNRPYTRREGAKGAMDR GVELFNFAMPVPLGKGANALVNSIEQDKNRRSKIYNEKSSLESLLSTLLVNTKSYNINEL RKKLKQED >gi|197283003|gb|ABQU01000047.1| GENE 3 2067 - 2279 275 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309700|ref|ZP_04808855.1| ## NR: gi|242309700|ref|ZP_04808855.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 70 1 70 70 107 100.0 3e-22 MEYAHIGHLLLDIEIQEMKQDRIQMGKLWNEIISTHHEEIGYEAMLQKIKSLRLKYKENN NKNEAVNELG >gi|197283003|gb|ABQU01000047.1| GENE 4 2347 - 3243 891 298 aa, chain + ## HITS:1 COG:no KEGG:PSR_61030 NR:ns ## KEGG: PSR_61030 # Name: not_defined # Def: conserved hypothetical protein containing fibronectin, type III domain # Organism: S.ruber_M8 # Pathway: not_defined # 21 297 229 507 2594 267 53.0 4e-70 MKYTPNTKVELEKLVNDLSINLGDIDTSKITDMSGLFRNTKRTDFSGIEKWDVSSVKDMT SMFEGAKTFNADISNWNVGNVENMYEMFRSATSFNQPIENWNVSNVWDMRGMFARATSFN QDISKWDVSNILSMERMFADATSFNQSIGEWNVGKVENMERMFFGAKAFNQDISSWNVRG VRNMAFMFSFAKSFNQPIGKWDVSNVENMKSMFDAAESFNADISKWNVSRVEDMYGMFRD AKAFNQDISKWDISSVRSMYGMFEGAKSFNQDISKWNVSDIDDIDCETRDFIGNSRSN >gi|197283003|gb|ABQU01000047.1| GENE 5 3325 - 3591 103 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309702|ref|ZP_04808857.1| ## NR: gi|242309702|ref|ZP_04808857.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 88 1 88 88 143 100.0 3e-33 MGALPLAIVKLSFSDNALPLLKPTCICSKFFAYMSLVKVNEKLSRIMQNLFLKIANQSRI ATSLTSQSPILVDRIFTSLACKYLPSLF >gi|197283003|gb|ABQU01000047.1| GENE 6 3750 - 3899 192 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309703|ref|ZP_04808858.1| ## NR: gi|242309703|ref|ZP_04808858.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 49 2 50 50 64 100.0 2e-09 MIFDVKFKKSIEKEIKKLEKLNPKVADKIIYFIFSHLASSQKPQKRNGN >gi|197283003|gb|ABQU01000047.1| GENE 7 3902 - 4114 279 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309704|ref|ZP_04808859.1| ## NR: gi|242309704|ref|ZP_04808859.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 70 1 70 70 97 100.0 2e-19 MVITITNADNNLIDILESINKKLSKPYKIEKLQEYFIPYQESYAYKKYQSFSEDYKKELA EEIKTDIKRL >gi|197283003|gb|ABQU01000047.1| GENE 8 4632 - 5687 240 351 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 194 342 751 897 904 97 39 2e-19 MNTLFCIEKNYSFKPLRDFATRYAEDLLGEIHQIHFINTDDSLEYLSKNLNYLIQNSNNI LILSPKDSLQEISSHIQQKLDSKAVQEKNIYYFKILHCLITLQAFPQNSPQHSLESLLQT PKNTTFLYPLGIECKSAYMLLKPLAKIHNVALQIAFESNEIGILKAIGDSQESLKNFLQE MQQTLQNKIFPSQNLAQSIIKILAQNKQKITTAESCTGGLAAYYLTKESGASEVFDAGII SYSNAIKNAWLEVSQNHLEQFGAVSEIVVYEMLKGALKASGADFAIATSGIAGPNGGSPN KPVGTIFIGAMNKNGDEIIQRVLFKGDRNYIQEQSCLYAYLLFLKLFFKNY >gi|197283003|gb|ABQU01000047.1| GENE 9 5770 - 6639 968 289 aa, chain + ## HITS:1 COG:PA0141 KEGG:ns NR:ns ## COG: PA0141 COG2326 # Protein_GI_number: 15595339 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pseudomonas aeruginosa # 18 268 25 274 298 278 54.0 9e-75 MSKALVIRPEDERPGEVYNQKGKINKKFYEEEITKLQIELIKLQNWVKKYQKKIIVILEG RDAAGKGGTIKALREHLNPRGARVVALQKPSDVEKTQWYFQRYIDELPNGGEIVFFDRSW YNRAGVERVMNFCTNEQYKEFIIQVSHLEQMLIESGYILFKFFLDVGQEEQRKRIEARKD EPLKRWKLSPIDELSLNLWDEYTEAFEKMFSRTHTPFAPWLIVDSNDKRRARINLARILL AKIDYEDKDAENVCLLADPGIVSYYSSVRMFCGEEGDIKKDKKKKKDKK >gi|197283003|gb|ABQU01000047.1| GENE 10 6712 - 8094 1215 460 aa, chain + ## HITS:1 COG:Cj0025c KEGG:ns NR:ns ## COG: Cj0025c COG1823 # Protein_GI_number: 15791424 # Func_class: R General function prediction only # Function: Predicted Na+/dicarboxylate symporter # Organism: Campylobacter jejuni # 2 460 3 461 461 287 39.0 3e-77 MQNFLQHFFNISSFYTLIILFCLAGIFYFLSRIKQQNWQLIGALVFGVVFACFILTLAGF PTQGLGYFKDSTKLHWLYEVHIWLSFINSLFISFLRLMVIPLIFVGLVYAICNLDKTTKL KWTAIFSFASLMITTAIAAIIGLLLGVAFNLGVGVEAGVTEKSIRGVESFNSMILGFVPN NIIGAANSNNILGVVIFAIFFGFCAYLVGRQENFEQNFNIFKKWLTFIYLVISKMIGVLI KIMPYTIVTMIVDTLLVNGIDSIIEAGLFVILIYISWVLVFVIHSAILGFLGLNPIVYFK KAFKALLMAFVSRSSAGTLPLTIDCLEKLGVSRGGATFVGSISTTMGMNGCAGYYAALVC VFMLNALGIPLGFSEGVIIVLLCVITSFGIAGIPGITIMILSILLSGLGLESHFSLLAII LAIDPILDMARTSSNVSGGMIASIVTEKKLGNLEIQKYYS >gi|197283003|gb|ABQU01000047.1| GENE 11 8281 - 10386 2224 701 aa, chain + ## HITS:1 COG:Cj1506c KEGG:ns NR:ns ## COG: Cj1506c COG0840 # Protein_GI_number: 15792820 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Campylobacter jejuni # 4 701 2 700 700 650 52.0 0 MNFLKNMNIGTKLVVSISIIMLIGLSILSIVVVKSVGDSVRKDAETMILESSKGYSSFVE GVVNEMIALNRTSANVLGEIFAQTSKYNITPKALEDVVTNVLDSGSYADFAFLYLKNPLG FDGGNSFYRLDNGDYMVAYEDKQPSSAGGIVNVAINGNVELVSIKEALNSQKSSETKVLF GKPHRFSFGGKEFVGIDMAMPIFDANNQVVGAVGFIFSFGDIANSFLDSNNKLFEGSIVA MFDQDGTIILHGNQSLLFKKLQDTNKRPEAKLIVDAIIAGQTGVYDYIATDGAPSYASLV SFSSVDNYVSWRVLVTAPKSSVLAPLYRLEYLIFTASAAFLILVMAFVYFYIRKNVANRL PIILDALDKLFKFINHESKDVQTIKIRANDELGAMGRIINANIERTRSSLQIDEEAIQAA VDTAKEIEAGNLTARISKDPVNPQLMELKEVLNTMLSVLQRKIGSDTNEIARVFDSYVKL DFTTEVKNANGRVEVVTNTLGEEIKKMLHASANFARELTARSTELRESMQKLTDGSQAQA SSLEQSAAVEEISSSMQNVSEKTMDATRQAEDIKEIVGVIKDIADQTNLLALNAAIEAAR AGEHGRGFAVVADEVRKLAERTTKSLGEIEANVNVLVQSVNEMSESIKEQTEGISQINEA IAQLETATQDNVGVANATNEITKSVNDIAENILNDVNQKKF >gi|197283003|gb|ABQU01000047.1| GENE 12 10517 - 11443 234 308 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163756109|ref|ZP_02163225.1| 30S ribosomal protein S1 [Kordia algicida OT-1] # 77 301 122 343 347 94 28 9e-19 MKKFLPLSLMLCSSLFAANNLFEVTPQIGGSWHVDNQRMADDIDLSYGLKFGARVAPEVL VELGYDWITHAEQSIPDNKTSFNRYYMNVVKEFEVWNSVSPYILGGVGYEDVSNNNQSLD SAPFGQYGLGLRWEAFKYLHLKTELRHLVSFDGRSDVIAMLGFSIPFGTFAQEEVVVEEV VEEVVVEEVPAPTLSHIHTFSVQFPSDSSSVNPEYYPEIQDFAEYMKQNPDKTATISGHT DSTGSEAYNQKLSERRAISVKEEIVKQGISPDRLDTKGYGEEKPIATNKTKEGRQANRRV EAEVYNAN >gi|197283003|gb|ABQU01000047.1| GENE 13 11446 - 12840 1266 464 aa, chain + ## HITS:1 COG:no KEGG:WS0208 NR:ns ## KEGG: WS0208 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 464 8 470 470 455 49.0 1e-126 MRPVIKYDIAIYSPSIHLEMKEAKEICEIFISNSGTIRSLSIRAIYFSFENISYFEEGAV ILVAKALLAIQDRVSIPVAFIGYSDLQFPKLKALFPNRSVPLFKTEAMANLLLSLKMPSI SQKIIYYDNDGMVQTLISRELENRGYEVICVNNMQSLLAKGKQFLDKAFYLYNIYFDVTG NFIPTTIHSGIVTYTLYKKADKNISLYFNLQAHNSRLREGYKVFIFDVTQTQDFSLVALE FIMSLALNNIRYEACIAICGLKVKINPDKIDLCKRSGIYFFGSVAECKNDSLIREYANKY QLAEQKRKGLTKHLVAQLPVFINAAIETLSSLTGGEAKRTDYKVTTYNKTGQNDIMGAMI NFEGDVSGVVALCFSKMIVKEASMMLLGEESQSDEELLDVISEFTNIIAGRAKAVLSEHN LSIGISLPKACRSEDEIVAMLVGKQGVQVNLLLNNKPLILFLAH >gi|197283003|gb|ABQU01000047.1| GENE 14 12817 - 13224 350 135 aa, chain - ## HITS:1 COG:Cj0635 KEGG:ns NR:ns ## COG: Cj0635 COG0816 # Protein_GI_number: 15791995 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Campylobacter jejuni # 5 129 4 125 127 118 51.0 3e-27 MQNIIALDIGLKRIGIAQFLQNIPIPLPPILRKNRNQAARDVSNLIQMKNPQILVIGIPQ DGDSSLEMERRIKHFINLLEIPKGIEICFIDESFSSFEALQKMQGSKKNKKKDGSLDSLA ALIILERYLMSQKQD >gi|197283003|gb|ABQU01000047.1| GENE 15 13224 - 13985 651 253 aa, chain - ## HITS:1 COG:jhp0316 KEGG:ns NR:ns ## COG: jhp0316 COG0758 # Protein_GI_number: 15611384 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Helicobacter pylori J99 # 3 247 9 260 266 212 47.0 6e-55 MQTLNQLPPELQHLKNLKTLYYCGDIELLKKRKIAIIGSRNPNPYAQSFTKEIAKKISPY AAIISGGALGIDILAHNAALPNTIMVSPSSLDIIYPKTNQKIIQEIYKNALILSQFPPTY IPKNYSFLERNKIIISLAEYIIIPQADLKSGSMESAKYALSLGKKIYVPPHQLGQSKGTQ TLAKEKKAEIIWDIDEFLNQLFEASYNNDKDEVLEFCKSNPFFEEAFARFGEILFHYELE GKIQRNNGRIEVI >gi|197283003|gb|ABQU01000047.1| GENE 16 13972 - 16116 2082 714 aa, chain - ## HITS:1 COG:no KEGG:WS1882 NR:ns ## KEGG: WS1882 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 709 1 709 709 677 47.0 0 MTTPKATHQLQGSILAITPCEDSTFCVDNTFYITQINKKLEIQTSLQVTRDLEPPHRYSH AFGISNDSYFCIPIIGEKKSLILKLEHSKLKIISTLNDHDGEMESCAFSKNGNYFATGGQ DGRVFLYEGKSFLPTASLLARSDYISTIKFSQNNEFIAISGFDKFTMIFDVLRHKIAFNF VTNDVVEDSCFFENDEKLLLVLRNNSSIIFSLKEGKIISQEYSFAFWPTSIALDDEENYA LIGTRSDTLYVISLKDNSKVMEIKNEHAGIASLAFSHGFLYIGCIDGTLLIIDYNEGKEE LKDALATKNYKNAREAINKNVFLSIHPLTKVFDEVWPDILNQAIDLLNKDEIEKAIEITA PFIVSQPKKNEFDFYLSQKEGAKTFLQLIEKKDYSKAYEMTKTMKFLTKTQAYEKLENIW NRAFFNAKKLLIENAKINQRLAEQYLAPFENTPKKELIIQLLRNSDVFAKADNLIKQQNF KEYFSLTFQFSFLRETDLYKKVLLLGEKMLTNLIELEKNFQYQEAKKIAETLLVFPNLKR SANEKIVLMQQKENLLNAIEKKEVKKVYSMVDDIESLRSMPQFKDFTKDFLRRYEEAKPY AYAGNAKHTMVIFGEYMEISYWIDKIASLIKIAYLKQISNALNEIEVNWVITIKRYYERF GKSAEIIKLLQNHHSKEILDEFEGEGESDGYRYHPFVDNIVIYIVQKDSDFANA >gi|197283003|gb|ABQU01000047.1| GENE 17 16169 - 17185 709 338 aa, chain - ## HITS:1 COG:Cj0633 KEGG:ns NR:ns ## COG: Cj0633 COG2861 # Protein_GI_number: 15791993 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 50 335 91 357 360 149 38.0 9e-36 MDKINPITIGIIALLLLLLTFNFIPKSDSKPQQSLNYKESIPIDTNTSKINVALLQKNIK LLEENLKTLQQENNQTSQSTIPQITPPPISQESKPTKPTQIPSKPKTQCQKPKPQLAIII DDISNFYQYQKIQEIPYKITPSLFPRSIASQNTPEIAKKADFYMVHLPLEALNFSQKEHK YLLSTDSKQTIQETIQNLKKDFPNLTYLNNHTGSKFTQTPQAMYFLLEILNENNISFVDS RTTPHTKTRNYYQQNPTTPLNQCQNQPFLERDIFLDNELDITKITQNLIQAVKIAKTKGY AIAIGHPHQQTILALKNATNYLQNSGIELVYINELVIP >gi|197283003|gb|ABQU01000047.1| GENE 18 17192 - 17428 354 78 aa, chain - ## HITS:1 COG:HP0332 KEGG:ns NR:ns ## COG: HP0332 COG0851 # Protein_GI_number: 15644960 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation topological specificity factor # Organism: Helicobacter pylori 26695 # 8 78 6 77 77 63 54.0 8e-11 MSLIEKIFGSKKNSAQEAKNRLTLMLAHERTINVPYMDAMKQEILEVIKKYTKAQKIDIK TDSNQNFNTLEVEILLEK >gi|197283003|gb|ABQU01000047.1| GENE 19 17425 - 18243 821 272 aa, chain - ## HITS:1 COG:jhp0314 KEGG:ns NR:ns ## COG: jhp0314 COG2894 # Protein_GI_number: 15611382 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation inhibitor-activating ATPase # Organism: Helicobacter pylori J99 # 9 270 2 263 268 372 75.0 1e-103 MLKGAILSGIVITITSGKGGVGKSTTTANLAVGLANSGKKVVAVDFDIGLRNLDMILGLE NRIVYDIVNVMEGECNLSQALINDKKAKNLYFLPASQSKDKNILDKEKVANLIEKLKNEF DYILLDSPAGIEGGFEHSIFLADEALIVSTPEVSSVRDADRVIGIIDAKSQKAQNGEEVK KHIIINRLKPEMVEKGEMLSVDDVLKILSLPLIGIIPEDEKIVSSTNMGEPVIYGNSLSS QAYKNIAKRILGEEVPYLELKPKKGFFGRLFS >gi|197283003|gb|ABQU01000047.1| GENE 20 18287 - 18883 359 198 aa, chain - ## HITS:1 COG:jhp1243 KEGG:ns NR:ns ## COG: jhp1243 COG0164 # Protein_GI_number: 15612308 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Helicobacter pylori J99 # 13 188 9 193 209 137 45.0 9e-33 MELPLYNPLEICGIDEAGRGCIGGSLFVCGVILTPTFPKILLEQLQDSKKLSQKTRDNLA PQIQKYAKFHLVKKSAEEIDTKGLSLCIKESLQEILTNLQAPHYLFDGNCNFGIHSLQTL IKGDSKIPSISAASILAKNAKDKESAKLDNLYPQYGFKSHKGYGTKEHLKAILDFGYCKE HRKSYKIKIFTKENLFLI >gi|197283003|gb|ABQU01000047.1| GENE 21 18888 - 21305 2671 805 aa, chain - ## HITS:1 COG:jhp1293 KEGG:ns NR:ns ## COG: jhp1293 COG0466 # Protein_GI_number: 15612358 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent Lon protease, bacterial type # Organism: Helicobacter pylori J99 # 9 802 5 830 831 884 57.0 0 MQLERYGKFPKNLPIILEEDMFLYPFMIAPLFITNEENLKSIEMAMQSEDRLVFITTLSS KEEENTESFYDVGVIGTIMRHTAFPDGRIKILFQGLSRGNLLQVTSESPLMGEIAPILSK SFDPNRIDAILSVLKEKLRNLYNVSQNFSQDLLRSINETTDPNRAADLIASAIRLKKDPA YKILKENDPEERLLSLIDIVMEEIKAQQIQKEIKTKVNSQMEKINKEYFLKEQLKQIQKE LGGDNNKETEIQEYKQKLEKLKNSMSKSAYKEINKQINKLSRMHQDSADANLLQNYIELV LEIPFGAYSKKPLKIEEVEKQLNKDHYGLKKPKERIVEYFAVRELLSLRGKANTENKGTI LCFYGPPGVGKTSLANSIATALKRKLVRIALGGLEDVNELRGHRRTYIGAMPGRIIQGLI DAKEMNPVVVLDEIDKIHNSFRGDPSSVLLEILDPEQNKEFRDYYTNFDLDLSQVIFIAT ANDIGAIPAPLRDRMEFINITSYTPHQKEQIAKKYLIPQELKKHGLQPSEVSFNTQAIKT LVEKYTREAGVRNLRRKIAQILRKVAKEILQNPQEKITITTKNLPLYLDKIVFEFENVGK KNEIGLVNGLAWTSVGGDVLKIEALKIKGKGGLHLTGNLGDVMKESAKIAYSHIKSLIDS KELKIDKKLIPLTRKEQEENIQVDCSEIYNRFDIHLHVPEGATPKDGPSAGIAIGSAIAS LFSNRPIKSSFAMTGELTLRGKVLPIGGLQEKLIAAFKSGIKEVLIPKKNFERDMDEIPD EVKENIKIHPVEDFREVLKYILETK >gi|197283003|gb|ABQU01000047.1| GENE 22 21315 - 21983 559 222 aa, chain - ## HITS:1 COG:HP1378 KEGG:ns NR:ns ## COG: HP1378 COG4105 # Protein_GI_number: 15645988 # Func_class: R General function prediction only # Function: DNA uptake lipoprotein # Organism: Helicobacter pylori 26695 # 7 222 9 220 220 191 46.0 1e-48 MINILKFFFFFLSFIILFGACSSKSNSGLALDEVNKPADYWYQSMLKEIRNGDLEKADSY FTSLQSEHLNSPLLSEAMLILGRAHMQEEEYLLAAFYFDEYTKRFGNEQNIDFIKFLKLQ ANYFAFAKQFRDQQLLAKSIQEAQDFSQKYPYSRYRPMVDTMLLKLELANLSLNKEIIKL YNKKDKQQAAEYYQQKIDENQWVKDVFYKEAGSPWYQKIFEW >gi|197283003|gb|ABQU01000047.1| GENE 23 22245 - 22676 463 143 aa, chain + ## HITS:1 COG:HP1377 KEGG:ns NR:ns ## COG: HP1377 COG1699 # Protein_GI_number: 15645987 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori 26695 # 1 133 18 140 146 114 50.0 7e-26 MEFVVKSPILGFEHIQKMKLEKIAKDDDTFMQLKSCENDGISFTLVNPYAMRSDYEFEIP SPIKALLELKGKTNIDPQNSKLVTLNIVCIKDPIEESTVNFLAPVLFNFENLTMAQVVLE NFKYENFGLSEPISKFFDFNKTE >gi|197283003|gb|ABQU01000047.1| GENE 24 22689 - 23429 834 246 aa, chain + ## HITS:1 COG:Cj1076 KEGG:ns NR:ns ## COG: Cj1076 COG0345 # Protein_GI_number: 15792401 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Campylobacter jejuni # 4 242 2 240 243 164 41.0 2e-40 MKSLILLGYGKMARALALGLKGKFALYVGGRDSHKIQEFCKESQLSVLPQTNNVIDIEGK EILLCVKPYALGQFRFVGKAKCVYSILNAVSLETLKESIQSQNYIRAMPNVAASVGKSIT SLCGDEGYKNEALEIFDSIGRSVWIDEKMMPIAAALGGCSPAFLALVAESMIDAGVVNGL PRQESTKIVNGLFEGFAALLQDTHPALLKESVMSPGGSTAQGISSLEKNALRNAFFEAIL ASKNFA >gi|197283003|gb|ABQU01000047.1| GENE 25 23426 - 24316 789 296 aa, chain + ## HITS:1 COG:Cj0166 KEGG:ns NR:ns ## COG: Cj0166 COG0324 # Protein_GI_number: 15791553 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Campylobacter jejuni # 5 274 6 265 289 202 42.0 7e-52 MKTFAILGSSGSGKTALSLEIAQEKKCAILSLDSLSVYREIDIISAKPTKEEMQGIWHFG IDILEPMQPHNVQIFIQEYQRAKSHCQETNKNLLIVGGTGFYLKMLLDGLSCFPAFDKQK VDLQIQLLGNLESQYDFLCKIDSIYAAKLKPTDTYRIHKALQIYFATQKSPTQYFKENQQ TPIIQECEIYEITLKREILRQRIIQRTQKMLENGAIKETENLIKKYGKNYQWAKSIGIKE IIGFLENTLQESELESLISTHTVQLAKRQRTFNKTQFREHFCGDSKEIWREISKKI >gi|197283003|gb|ABQU01000047.1| GENE 26 24394 - 25752 1424 452 aa, chain + ## HITS:1 COG:Cj1378 KEGG:ns NR:ns ## COG: Cj1378 COG1921 # Protein_GI_number: 15792701 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Campylobacter jejuni # 50 439 47 430 440 327 47.0 2e-89 MNDILRHIPKTDKLLYAKEFCGFNVDLLKVIIVDFLESYRKTLLGGGEVIEIDECINRIR QIYLNATQKSLKPLVNATGIVVHTNLGRSVFSEAMLEEIKPILCAYNNLEYDVQKGSRSE RYIHLQNLFALLLGAEEVLVVNNNAAAVFLIFNTFAKNKEVIVSRGELIEIGGSFRIPRV MEDSGAILKEVGTTNKTHFKDYKEAISANTAMIFKAHKSNYEITGFSKEVDYKELIALAR ENDLLDYYDLGSGYFGLKGFEGNLKRHEMSLEEIASLNPSLVSFSGDKLLGGAQAGIIFG KRQYIEKLKENQLLRMLRVDKFTIAMLEATLFAYLQGQYEKIPTCKLLLQDKKTLEQKAQ ELFERIPKSFLPLIQETKSYSGGGAMPNKALESFGIALSYCDEQELERLLRKEGIIARIE NKKVILDVRTLLEGDNQKIQEALLKIEGQYAR >gi|197283003|gb|ABQU01000047.1| GENE 27 25742 - 27565 1166 607 aa, chain + ## HITS:1 COG:Cj1379 KEGG:ns NR:ns ## COG: Cj1379 COG3276 # Protein_GI_number: 15792702 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Selenocysteine-specific translation elongation factor # Organism: Campylobacter jejuni # 4 604 3 598 601 452 42.0 1e-126 MQDNLIIGVMGHIDHGKTSLIRALNGFWGDERSDERERGITLDLSFSNLSNGEKNIAFID VPGHEKLVKNMIAGAFGLDYAMLVVSANEGIMPQTLEHLKISSLLGIHNFLVVLSKIDLV DKKRIQELKQEIKQCFAGFESLKYQIFEVSIYDSVSMENLKNSLFMLPKSVHRDLGFFRY YIDRIFVIKGSGCVVSGTLLDGSITLEDKVWCCNLERLLGIKNIQCHGESVPWAKSGQRV ALNLSGVSHNELKRGDLLTKKGYLRGFDRVEVALHLFEEIPHNLEAMFFIGALKMSCRIL FLEDTKKYATLKFKSPIYSIFDERFILRDDNHTLGGGRILSPIVDPMKKAQKLTFLKFLN QRDFKSAFEILLKAHKKGLGLISASQRFGISQSEALEIAQKIDNCFVSQKSLVVYSKEAT KLLRDIICKILDKNPNALLSAALLTQKQSWVANDFAQHILDSLLQEGILCKNDSFYVGVD SKIGKVQDYLYDKIYSILQQQGFEPMAPYNLYDMLDIDRKSGDDIYKKLTKEKKIVRLSH KLFVCTQALTQILNEMRNIIKKEGYLDLNNFKEHFNLSRKYLISYLDYLDSFSDIENTGG KRIIKSC >gi|197283003|gb|ABQU01000047.1| GENE 28 27559 - 28563 824 334 aa, chain + ## HITS:1 COG:no KEGG:WS0836 NR:ns ## KEGG: WS0836 # Name: nifS # Def: NifS protein # Organism: W.succinogenes # Pathway: not_defined # 2 331 4 344 346 158 38.0 3e-37 MLDYLQNPPINSELMQKLIASKQPNYLAITPNASEKIWRENQALSNYLGCKIARPFSFNL ESFYFLLTKLTLKYKVAVVLSSHQMLYGAYLSLKERDSIIPLIPDKKSGQICIKEALEKG AECFVVPYLNEDILTSNFHLDKELKEVFSIWDISYALALRLPLPQNANLLLANGENLGLM RPFGVMLSKEAELGEFALYLEIENLYQVFLEAIKKQEIPSSNQAEKFYLALKEILGDDCY AFFETPNNTLPLGLQGIKARNLIQSLIFDGISMINGQECLFGFSKPSFVLQMMGYTEQKA RELLSLSFKKENCNIEWLAEKISQKYRQIRLLQG >gi|197283003|gb|ABQU01000047.1| GENE 29 28567 - 29796 1052 409 aa, chain + ## HITS:1 COG:Cj0857c KEGG:ns NR:ns ## COG: Cj0857c COG0303 # Protein_GI_number: 15792195 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Campylobacter jejuni # 25 394 22 384 386 238 40.0 2e-62 MQAVTLQKAISILQDAARGFKRNKEILPILEAYGRFLAQEVFCKKALPSFDNAAMDGYAI RKEDIGRSVKIKTTIFAGDCSEVELAQGECAKIMTGARLPRGADIVIPFEEIVGGFNHQE SIEIPKKEFKMGANIRKYGEEITLNANLFGVGEEVCENVLAILASQGVSYVEVFRGLKIG VFVSGNELKEPWENAREHQIYNSNATMILAMLRSFGFWGSYGGILKDDKQKILEILELPF DVIFTTGGASKGEADFMREVLEEVGAEILIAGVQIKPGKPIMVARMDSKFIIALPGNPLA GAILLRFLIIPFLKNLAGAKKHFPQAIRVKNKETFQLKKRMDAMLGDLGVEGFCITQKGK YTSGQILPLFESSAIALFGEEYTEVKEGDLIKVLPYKMLWGEVECDYIN >gi|197283003|gb|ABQU01000047.1| GENE 30 29830 - 30078 290 82 aa, chain - ## HITS:1 COG:no KEGG:SUN_2442 NR:ns ## KEGG: SUN_2442 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: Sulfurovum_NBC37-1 # Pathway: not_defined # 4 79 5 80 81 86 60.0 3e-16 MFEDFSKEEIENFHRKIAKNIATIRKEKRFSQLDLSLAIGYKSVSLVGGAEAGYKNIHYN LEHLYKIAKVLEVEIGDFFKGI >gi|197283003|gb|ABQU01000047.1| GENE 31 30183 - 30977 674 264 aa, chain + ## HITS:1 COG:Cj1426c KEGG:ns NR:ns ## COG: Cj1426c COG0500 # Protein_GI_number: 15792744 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Campylobacter jejuni # 17 264 26 283 283 146 37.0 4e-35 MFKIKRYESGLREIYFGKKKIFKIRNSVKELRFILNNISKKIDVLVLDMVESQQSKEGIY HFQYLLRRAHIVGKYYEIFYEFYLQNQNGKKVVFVDCGAHAGVFSDVALACGGICYAFEP NKYLYAFLRDLYKGNEKLILSNQAVSNKNGKTTFYTYANNAVSDGSGIMRNNLGVGYEVE MLDFCEFLKDIIQKHHKISLIKIDIEGAEFDVLDSLIEQKLYENVEYIMVETHERFFENP KEKIENLKSKITKNNIQNIFLDWI >gi|197283003|gb|ABQU01000047.1| GENE 32 30983 - 31666 813 227 aa, chain - ## HITS:1 COG:Cj0381c KEGG:ns NR:ns ## COG: Cj0381c COG0284 # Protein_GI_number: 15791748 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Campylobacter jejuni # 1 227 1 226 279 265 54.0 7e-71 MKLCIALDMPSPKDNLKLLENLKNTKDIWVKVGLRSFIRDGKDFLYQIKSIGDFKIFLDL KLYDIPNTMGDSIDEITKLPIDMLTIHASSGREAMQEVIKRIQHMQNPPLIMAVTALTSF NQGSFYEIYHANLESQVLEFAKIAYESGINGVVCSCLESKAIKEKIGQDFLTLTPAIRPF GEDSGDQKRTATLQDAKEAMSDFIVVGRPIYKAENPQEIVQKILGII >gi|197283003|gb|ABQU01000047.1| GENE 33 31663 - 32109 513 148 aa, chain - ## HITS:1 COG:jhp0001 KEGG:ns NR:ns ## COG: jhp0001 COG0781 # Protein_GI_number: 15611072 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Helicobacter pylori J99 # 1 132 1 132 138 138 53.0 4e-33 MATRSHAREVVVQLLYAYGSGNEKIGKFADEIFEEQKIKNNQKEFATSLFEGVIANLEAL DLRISHQLKDWDFSKIGDMEKAILRLGVYEIIFNHLSKAIAINEALELAKSFGNENSAKF INGVLDGIAKNLQDSSQTPHQPHQKGNQ >gi|197283003|gb|ABQU01000047.1| GENE 34 32109 - 32579 595 156 aa, chain - ## HITS:1 COG:jhp0002 KEGG:ns NR:ns ## COG: jhp0002 COG0054 # Protein_GI_number: 15611073 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Helicobacter pylori J99 # 1 150 1 150 156 223 72.0 1e-58 MQIIEGELSLLGDEKIAIISSRFNHLITDRLVEGAKDCFLRHGGIEENLTHILVPGAFEI PFALEKVLAQGNYDGVCCLGAIIRGSTPHFDYVSAEATKGIANVTIRYGAAVTFGVLTTD SIEQAIERAGTKAGNKGFESMSSLIELINLYRKIGA >gi|197283003|gb|ABQU01000047.1| GENE 35 32590 - 33387 805 265 aa, chain - ## HITS:1 COG:jhp0003 KEGG:ns NR:ns ## COG: jhp0003 COG2877 # Protein_GI_number: 15611074 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase # Organism: Helicobacter pylori J99 # 2 263 12 275 276 372 70.0 1e-103 MIIIAGPCVIENDEILEEIAESLNPLSKNPKIDFYFKASFDKANRTSLESYRGPGLEKGL ESLAKIKAKFGYKLLTDIHETHQVKPAAEVVDILQIPAFLCRQTDLIVEVAKSKAIVNIK KGQFMNPADMRYSVLKAIKTRGGENPTYQESKNLGILLTERGSSFGYGNLVVDMRSLMIM REFAPVIFDATHAVQMPGAGGGKSGGDSRFAPILARAASAVGIDGLFAEVHTNPKIALSD GPNMLTPQVLLELCQKILEIDNLIK >gi|197283003|gb|ABQU01000047.1| GENE 36 33391 - 34026 642 211 aa, chain - ## HITS:1 COG:Cj0237 KEGG:ns NR:ns ## COG: Cj0237 COG0288 # Protein_GI_number: 15791609 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Campylobacter jejuni # 6 210 1 206 211 254 56.0 1e-67 MAQTSIETLFEGAIKFKEENFLTYKELFENLKEGQNPHTLFVGCSDSRVVPNLITNTLPG ELFVIRNIANIVPPYREADEYLATTSAIEYALEELKVENIIICGHSHCGGCAALYEEEHF TKMPNVRNWLKLISPVKEQVLALNPKTKAMRAYFTEQINIEKQIMNLFTYPNVKEKYLAR TLHIYGWHYIIESGEVYSYDFKKHEFNLLKG >gi|197283003|gb|ABQU01000047.1| GENE 37 34036 - 34812 715 258 aa, chain - ## HITS:1 COG:jhp0752 KEGG:ns NR:ns ## COG: jhp0752 COG1360 # Protein_GI_number: 15611819 # Func_class: N Cell motility # Function: Flagellar motor protein # Organism: Helicobacter pylori J99 # 1 248 1 242 257 96 28.0 3e-20 MAKEKCPPCDCPQGVPLWLGTYGDMVTLILTFFILLLSMASFTNQKINQAIGSLEGSFAV LEKGLRTQINPPQPIQATPIQAETEMDNVMNIFASLITEYNEINKLANGPAVEFEEAEKG IIIRIPEDLLFESGSATLSNSNGITFLKRISLELNHLPKEILIKAIGHTDNTPMKKNATF ADNLELSIARGVNVANLLISQGIDKERIIGGGEGEFSPIANNDIPELRAKNRRVDLYVYS IGEDLSNLMENLSKATQQ >gi|197283003|gb|ABQU01000047.1| GENE 38 34907 - 35524 565 205 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|154175107|ref|YP_001408238.1| ribosomal protein L22 [Campylobacter curvus 525.92] # 1 199 1 197 199 222 56 4e-57 MQAIVDFIVESVGALGYFGIFFMMLLESSFIPFPSEVVMIPAGYLAHQGEMNFFVAILFG ILGSLAGALINYYLALFFGRDILIRYGKYVFFDEKTMQKMEDFFAKHGHISTFSGRLIPV VRQYISLPAGLGKMNLALFCFYTSLGAGIWVIILTALGYFLGQNEALLKEYLHIITLGLV FLVVLGIAVYIFYQKRKRQNSKNLG >gi|197283003|gb|ABQU01000047.1| GENE 39 35508 - 37295 1752 595 aa, chain - ## HITS:1 COG:Cj0522 KEGG:ns NR:ns ## COG: Cj0522 COG1283 # Protein_GI_number: 15791883 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/phosphate symporter # Organism: Campylobacter jejuni # 33 199 1 167 167 210 70.0 7e-54 MHNFRRYTLIALIIALIYFLVVFPEFAKILAGVAILLIGMTNLSNGFKSFSGGLLEKILK KSTDTRFKSISFGVITTILMQSSTLVSIISISFLSAGLITLAQGIGIVFGANLGNSAGSW LIVGLTSINISMFAIPLIVCGTLLGFQKDSLFKGIGLIFMGIGFFFLGVDYIKSGFESYK EVMDLSRFNFEGFKGILIFVGLGAIITGIVQSSHATLAIIISALISGQIGFENALAATLG TSVGGVVTAVIASFSTNIEGKKLAIANCIFNFTIALIVILLFPYFVSLVNLVAHYLWIPQ DNLALKTALFHTLFNLIAVLLISLFIKQIVFFLDKFIKAPKDRDMDAPLYLNKNIINYPD TAIEALQKESLHLYNNAYAMIAHTIGFNRSDIRGKESFDNIIQNKKWFSGNVDLDYLYKR KIKVLFDAIMEFSTKAQTFVRDEKKHSRIFAFKIASRNITEATKNLKIIQTNMKVYSSSQ NKELANQYNAMRKDLGELLRSIEELKTMKDENAQLILSQLKNAKNLLKEKDYNALHNVEE LISQDKISVTNGTSILNDSAFVAQIANQLIEAVEIIFAKEEWLKEQNPQESIQDS >gi|197283003|gb|ABQU01000047.1| GENE 40 37465 - 38679 1110 404 aa, chain + ## HITS:1 COG:BS_yumB KEGG:ns NR:ns ## COG: BS_yumB COG1252 # Protein_GI_number: 16080263 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Bacillus subtilis # 7 400 7 405 406 278 37.0 1e-74 MEKAIKKILIIGGGYGGLKVALGLQKKLKAKADITLISKHDYHYQTTLLHKVAIGTLSSR KARIYYRKILNPKKIRFIKDKIIEICPRENKVIGNGGEYFYDYLVIGLGFKPDSFGIKGV DAYTYKLSSLNRALKLTKNIENKFKDFMHTKNPKDLQIIVCGTGFTGIEFAAELATQLDE LCLICGIDRKIPKVTCIGRSPHILPVFNSKLVDIAEDKLKKLGVEIISSGNIKEIQENKV LVEKDGKIIEVEGNTIIWSAGVKGSDIVEKSEIPNKKGRIAVDSHLQCKDFSNIYVVGDC AIAATKDAIHAPTAQLSAQMGDYLAELLCAKLEGRAFEKPFLFNHRGTVCSIGHTDGVGI VYHKNVSGELAAFMKNTIENKWLFSIGGFKMVFKKGQFRYRTSN >gi|197283003|gb|ABQU01000047.1| GENE 41 38719 - 39465 366 248 aa, chain + ## HITS:1 COG:MT2803.2 KEGG:ns NR:ns ## COG: MT2803.2 COG4422 # Protein_GI_number: 15842273 # Func_class: S Function unknown # Function: Bacteriophage protein gp37 # Organism: Mycobacterium tuberculosis CDC1551 # 13 220 14 225 284 80 28.0 4e-15 MQNLFGETLEFGYNPWHGCFKISAGCKNCYVFSIDKSHQKDSREIYQAKSFYLPLQKNKN QTYKIPDFSKIWLCFSSDFLLKEADSWRKEVWEMIKIRKNCTFIFFTKRIMRFMECIPSD WGSGYENVIVGCSVENQYYASLRLESFLQLPIKHRWIVCAPLLERLDLSRFLDKEKIEHL SVGGESGFNARICDYEWVLDLREQAKRAKINFSFHQTGSRFLKDSRIYKIPKKLQKIQAQ RAGIDLEF >gi|197283003|gb|ABQU01000047.1| GENE 42 39466 - 41346 2839 626 aa, chain - ## HITS:1 COG:jhp0101 KEGG:ns NR:ns ## COG: jhp0101 COG0443 # Protein_GI_number: 15611171 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Helicobacter pylori J99 # 1 626 1 620 620 882 82.0 0 MGKVLGIDLGTTNSAMAVFEGNEAKIIANKEGKNTTPSVVAFTDKGEILVGDPAKRQAIT NPEKTIYSIKRIMGLMFNEEKAQEAKKRLPYKVVDRNGACAIEIAGKVYTPQEISAKILM KLKADAESYLGEEVTEAVITVPAYFNDAQRKATKEAGTIAGLNVLRIINEPTSAALAYGL DKKHAEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNAIIDWAAKEFEN ENGINLKNDVMALQRLKEAAENAKKELSSAQETEINLPFITADASGPKHLVKKLSRAKFE SLIESYIDQTINKIGDVIKDADLSKSDIAEVVMVGGSTRIPKVQERVKDFIGKELNKSVN PDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKIIERGTTIPVKKNQVF STAEDNQPAVTIQVLQGERELARDNKVLGNFELSGIPAAPRGVPQIEVTFDIDANGILTV SAKDKATGKAQEIKITGSSGLSDSEIEKMVKDAELNKEEDKKKKEAIEVRNQADSLVYQT QKSLDEMKDKIDSSEAEKIQNAINELQETLKNENASKEEIEAKVKTLTEASHKLAEAMYQ KDQNAQGNTAQSNNKKDDDVIDAEVE >gi|197283003|gb|ABQU01000047.1| GENE 43 41368 - 41910 719 180 aa, chain - ## HITS:1 COG:jhp0102 KEGG:ns NR:ns ## COG: jhp0102 COG0576 # Protein_GI_number: 15611172 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Helicobacter pylori J99 # 6 180 21 190 191 127 51.0 1e-29 MQDENEKIDSPQDENTQEEQEISAQDSKESLENKIKELEDQYLRTYADFENTKKRLMREK DQALEYAYEKIAKDLLPSIDTLEIALKTIKESKENSDQTEILGKIEEGIALTLDNLLKTL AKHGIEPIDASGEFDPNFHDAIMQVQSDSHNAGEIVAEMQKGYKYKERVLRPSMVSIAKS >gi|197283003|gb|ABQU01000047.1| GENE 44 42189 - 42980 789 263 aa, chain + ## HITS:1 COG:Cj1235 KEGG:ns NR:ns ## COG: Cj1235 COG0739 # Protein_GI_number: 15792559 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Campylobacter jejuni # 2 263 1 272 273 232 46.0 5e-61 MMKKIVLLMLCVAKLFASELIVENGKTLVLVEDSNEIRKLKEKSQIWIPHPQEKDKSILV LPISYYAKERKLHLDNGKIVRIYKGNYKSEQISVDSSKAKPNPKNQARIKQERDEANKIY ANYTKGIYWDKPFIYPMESKITSEFGNARLFNQEIKSYHSGTDFRAAIGTPIYASNSGKV VIAKDRFLAGQSVVIDHGEGIFSMYYHCSEIKVKVGDRVERGELIALSGNSGRVSGPHLH FGILVRGVQIDPLDFIAKINTIF >gi|197283003|gb|ABQU01000047.1| GENE 45 42993 - 43595 687 200 aa, chain + ## HITS:1 COG:jhp0104 KEGG:ns NR:ns ## COG: jhp0104 COG0235 # Protein_GI_number: 15611174 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Helicobacter pylori J99 # 4 189 15 201 212 194 46.0 7e-50 MEKIFQDLKTISLAMFRKNFFGIFHGSISTKLEEGHFLINKKDAIFDDLTEDSLIMLYHK QDYRWKEASIDAFIHSLIYQNIPNAKYIAYGMPPFTVAYTLSNDKIEPRDYFGYKILGTL EVYDPKDYDNWYERADIEINRYFKESDKKIMVVKGYGVYVYHRDLQYLSKLMAILENSCK ILHFHSILEGNKPSHELFDF >gi|197283003|gb|ABQU01000047.1| GENE 46 43657 - 44616 925 319 aa, chain + ## HITS:1 COG:Cj0774c KEGG:ns NR:ns ## COG: Cj0774c COG1135 # Protein_GI_number: 15792112 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Campylobacter jejuni # 4 317 2 334 336 343 54.0 3e-94 MDFIEVKNLHKSYGSMEVLKNICLNIKKGSIFGLVGHSGAGKSTLLRTFNGLEKINSGKI WIDGVQIDQLNIEELRHFRRKVGMIFQNFSLMARKNVYENIILPLQCWGEKIDKNKIEKL VELVGLQEKIKFYPSQLSGGQKQRVAIARALAMNPSLLLSDEATSALDPSTTSSILELLL QINKEIGVTIVLVTHEMEVVKKICQEAAFMENGEIIKSGNIESLFLEPDKKMREFLGENE ILPQSGVNIRIYFPKEVAQNPIITQMARELQVDFNIVWGNLESFGGIALGVLVINIQKEF QERVCRFLTQSGTRWEIVE >gi|197283003|gb|ABQU01000047.1| GENE 47 44627 - 45277 629 216 aa, chain + ## HITS:1 COG:CAC0985 KEGG:ns NR:ns ## COG: CAC0985 COG2011 # Protein_GI_number: 15894272 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Clostridium acetobutylicum # 5 212 7 214 218 182 59.0 3e-46 MDIKLMKLLFEATLDTLYMSIIATTIAALLAVVPAILLVLCSPSGLKPNAVVYRVLDAIT NTLRSFPFLILMVVLFPFTQWILGKSIGATAAIVPLSIGAAPFIVRIIEGALKEVDKGVI EAAQSFGASHFQIIFKIMFIEALPSIVSGITLALILVIGFSAMAGAVGGGGLGDIAIKYG YYRFQSDIMLYTVVILIVLVQIIQSFGDFLYRKLKH >gi|197283003|gb|ABQU01000047.1| GENE 48 45299 - 46114 1036 271 aa, chain + ## HITS:1 COG:Cj0772c KEGG:ns NR:ns ## COG: Cj0772c COG1464 # Protein_GI_number: 15792110 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Campylobacter jejuni # 37 271 24 257 257 256 56.0 3e-68 MFKKIIGLLGIAAVLGFSGCGDSAKENSAESKGEVKLVVGATPEPHAVILEQVIPVLKKE GVVLEIKEFTDYVTPNLSLNDGSLDANFFQHKPYLDSFNKERGTKLVSVANIHLEPMGVY SNKIKSLDELKEGDLVSLPNDPSNGARALRILEANGLIKLKEGVELVSVQDIVENPKKLN FKEMDAPQLARALDDVTISVINTNFALLAGLNPLNDAIALESKDSPFANIVVVKEGQENE AAIKKLVEALQSQEIKDFILTHYKGAILPSF >gi|197283003|gb|ABQU01000047.1| GENE 49 46161 - 46487 328 108 aa, chain - ## HITS:1 COG:Cj0451 KEGG:ns NR:ns ## COG: Cj0451 COG0036 # Protein_GI_number: 15791815 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Campylobacter jejuni # 3 108 106 212 215 130 63.0 6e-31 DYGISPAIVLNPHTSLQSIAYLIEYVDMVLLMSVNPGFGGQKFIPNTFDKIKALKDMIES LNPNCLIEVDGGVSDKNIMELKKCGVDIVVAGSYIFSGNYKEKISSLK Prediction of potential genes in microbial genomes Time: Tue May 24 02:26:10 2011 Seq name: gi|197283002|gb|ABQU01000048.1| Helicobacter pullorum MIT 98-5489 cont2.48, whole genome shotgun sequence Length of sequence - 14158 bp Number of predicted genes - 16, with homology - 14 Number of transcription units - 8, operones - 3 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 307 218 ## COG0036 Pentose-5-phosphate-3-epimerase - Prom 401 - 460 10.4 + Prom 360 - 419 6.4 2 2 Op 1 . + CDS 447 - 1307 762 ## COG0158 Fructose-1,6-bisphosphatase 3 2 Op 2 . + CDS 1291 - 1599 239 ## NIS_0795 hypothetical protein 4 2 Op 3 . + CDS 1589 - 3520 1844 ## COG0143 Methionyl-tRNA synthetase 5 2 Op 4 . + CDS 3531 - 4619 1060 ## WS0216 hypothetical protein 6 2 Op 5 . + CDS 4622 - 5011 424 ## WS0215 hypothetical protein + Term 5087 - 5153 3.0 - Term 5446 - 5478 1.1 7 3 Tu 1 . - CDS 5492 - 8140 2961 ## COG5651 PPE-repeat proteins - Prom 8167 - 8226 6.5 + Prom 8127 - 8186 7.6 8 4 Op 1 8/0.000 + CDS 8311 - 9144 1010 ## COG4786 Flagellar basal body rod protein 9 4 Op 2 . + CDS 9157 - 9948 1126 ## COG4786 Flagellar basal body rod protein + Prom 10191 - 10250 7.3 10 5 Op 1 24/0.000 + CDS 10370 - 10804 524 ## COG1815 Flagellar basal body protein 11 5 Op 2 16/0.000 + CDS 10815 - 11315 528 ## COG1558 Flagellar basal body rod protein 12 5 Op 3 3/0.000 + CDS 11326 - 11643 374 ## COG1677 Flagellar hook-basal body protein 13 5 Op 4 . + CDS 11694 - 13412 2100 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 - Term 13300 - 13332 -0.8 14 6 Tu 1 . - CDS 13375 - 13602 80 ## + Prom 13461 - 13520 7.0 15 7 Tu 1 . + CDS 13616 - 13840 298 ## PROTEIN SUPPORTED gi|239524421|gb|EEQ64287.1| 30S ribosomal protein S15 16 8 Tu 1 . - CDS 13993 - 14157 158 ## Predicted protein(s) >gi|197283002|gb|ABQU01000048.1| GENE 1 1 - 307 218 102 aa, chain - ## HITS:1 COG:HP1386 KEGG:ns NR:ns ## COG: HP1386 COG0036 # Protein_GI_number: 15645996 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Helicobacter pylori 26695 # 1 102 1 100 217 124 56.0 5e-29 MLVAPSILSANFGKLDEEIQAICEADCDFIHIDVMDGHFVPNLTMGPIIVESVAKVATKP LDIHLMVQNNNFFVDLFAPLKPKFLSFHIEEEKHANRLVQKI >gi|197283002|gb|ABQU01000048.1| GENE 2 447 - 1307 762 286 aa, chain + ## HITS:1 COG:Cj0840c KEGG:ns NR:ns ## COG: Cj0840c COG0158 # Protein_GI_number: 15792178 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphatase # Organism: Campylobacter jejuni # 9 280 1 271 280 248 47.0 8e-66 MQNRLSSDLEEIFATIKNSSLLIFEVLKNSMGEYTQNTNKTGDLQLQADILADKIIQDSF RELKIIQQICSEEQESAIKLHNEGIYSIAYDPLDGSSLMGANLSVGSIFGIYQGDFLPQN LIAAAYVVYGMVIGIGFASNLKEGVDYFVFDGREFRFQKTLMLKEKGKLNSPGGTQQYWS KEHREKIESLFAKGYRLRYSGGMVPDLHHILVKGGGLFSYPSTQDAPKGKLRMLFEVFPF AFVFERAGGEAIDSKKRLLELAPSHLHDTTPCFFGSKEEIEFVRSH >gi|197283002|gb|ABQU01000048.1| GENE 3 1291 - 1599 239 102 aa, chain + ## HITS:1 COG:no KEGG:NIS_0795 NR:ns ## KEGG: NIS_0795 # Name: not_defined # Def: hypothetical protein # Organism: Nitratiruptor_SB155-2 # Pathway: not_defined # 47 102 10 65 65 62 60.0 5e-09 MSEVIENAEIALKEIKECQNRHNTTSCDFCKEAIKCEKKHNFEQMTELNLQENIEMLKEC QKKHNLQSCLQCQEVLECAVRNRYVNAVYLSMNKGNGGSFEF >gi|197283002|gb|ABQU01000048.1| GENE 4 1589 - 3520 1844 643 aa, chain + ## HITS:1 COG:Cj0838c_1 KEGG:ns NR:ns ## COG: Cj0838c_1 COG0143 # Protein_GI_number: 15792176 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Campylobacter jejuni # 6 512 3 504 525 621 58.0 1e-177 MNSKFYITTPIYYVNDIPHIGHAYTTIIADTLARFHRLLGDEVLFLTGTDEHGQKIQQSA QKNGKNPKEYVDEISSRFRNLWDSFGIGYDWFIRTTDSYHKETAQNVFLKMFQKGDIYKG EYEGNYCVSCESFFAKSQLIEQKKCPDCGKETNLLKEESYFFRLSAYGDRLLQWIEQNPE CILPKMRRNEVINFIKEGLEDLSITRTSFDWGIKLPNEIGDSKFVMYVWLDALVNYLSAL GYQNNLENKMDFWPANYHLVGKDILRFHAVYWPAFLMSLELPLPKHIAAHGWWTKDGAKM SKSIGNVVNPKEVVESYGIDCFRYFVLREVPFGQDGDFSQKALIERFNADLGNDLGNLLN RLLGMSAKYFDNTLNVDLESYQNAYKMEIEEIKAILGNLNKMMQEVQINRYLEELWRLFN LANGIIAKKEPWKLIKENKQAEVAELLIFVANLLIKGALCLYPCMPESAKKIMSVFGLEV NAQNYKNFVCGEEVLTSVSLNPIPALFPKIEEICEVQKPVENKENKEALEPLKLENPITK DDFTKIEIKVGTIIEAEILPKSEKLLKLKVDLGESRARQILAGIKAYYTPTDLIGKQVCV LANLKPAKLMGEISEGMILAAKDDEGLAFIMPQNQRKNGSQIS >gi|197283002|gb|ABQU01000048.1| GENE 5 3531 - 4619 1060 362 aa, chain + ## HITS:1 COG:no KEGG:WS0216 NR:ns ## KEGG: WS0216 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: Porphyrin and chlorophyll metabolism [PATH:wsu00860]; Metabolic pathways [PATH:wsu01100]; Biosynthesis of secondary metabolites [PATH:wsu01110] # 8 349 1 330 330 219 36.0 2e-55 MKKNGIQLSVNEIVEITYGTLLNQPSISFFNQICDDVQKIKKGDLFVARDSKDISKAVQE GAFGILFSDEIAMSDSEVAWIYVENLDEALVRILRHYLIMRNEILFLLNSDEYELSHQIL IPKKSFIHFDGSLVQLISYVLEGENTAYILYHNAIQLDFSNLPQFQQEIKELDKQKIPEE SFLFSINSFSLFGMKIFYKSVDYSLPIPKLFLQLLARVLKFAEEYSLEADLEKLEGLSSF KPLYLDERGFISKPGATNKVVLACKDIKLYEQFLAYFKMYAKWARLMLFVPKEYQEIFTP YAEILGYETKEELFSQVLVQKYNFALVLGVETQDFEERFQGQVEEQNLFDLANIDNEDTK KD >gi|197283002|gb|ABQU01000048.1| GENE 6 4622 - 5011 424 129 aa, chain + ## HITS:1 COG:no KEGG:WS0215 NR:ns ## KEGG: WS0215 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 125 1 126 128 134 53.0 1e-30 MKVAVPVFDESLRIFGNTGHTPFFAVFEQKGSGMFKQFNLLELRENPRGNVEASEGCSHK DSDMTQEEQIAHKLEHNVLGEIIKDCQAVLVKKACKNTAKVFLECGIEIYKINQDCQNAK DSFKYLAKK >gi|197283002|gb|ABQU01000048.1| GENE 7 5492 - 8140 2961 882 aa, chain - ## HITS:1 COG:jhp0856 KEGG:ns NR:ns ## COG: jhp0856 COG5651 # Protein_GI_number: 15611923 # Func_class: N Cell motility # Function: PPE-repeat proteins # Organism: Helicobacter pylori J99 # 518 882 2038 2399 2399 77 26.0 1e-13 MKVSIIASRVLAGLSIAAAFAGIAVANTGSANTGSIQQPTITDIAVSDSAGFNSNFQQNG TGNWQFNNTNSNLNLSFDATKIREDNTTKLNNLDINANNVTITGPIGGYFPDELGEIVGD LAPTGQAFSFNINAQQVTFDSNAFVNIYKDSNITGDTTFQNGAMLNVIGHNLNIIGNANF QGDGSGFHMLQLGKINISENLTMTNEHFQFNAGAQSAVQNGTLPNTGSNQPDYYNSMLSN WSFTDWGIYVGKDANITNSQFGFFSADLPLGQMNLIHANQFNADVLTSNQVGTITYFKDI SSLLTNTNILRPNLYNLQIEITNGNSLNGVTYTLNLSEDGKTLYINGQLSEEFAKQDLTS LKSVASSLITTEQGYITQAQTQLTQIEGNLTSQKASLESQLAMADEATKAQLQQQINQIT NELETIANAKTDLTDRNNALTETANQVNTATESNIKDIMLEALAPSINAGDYSLANNILE AVKIRKDNTLFGGVLFDMNEKLTPIVSATKNSGNTGESLKILSSIAGSSLHTQQVMQVIT NQRFFKDTRDSARSATNFTDASSSMMTAINVSNDMAISSRIARANNPYQSLSKEKFAASG TTGTDGAYSYYETYNAAVWANAFGGANIIDGESGGLYGISIGVDGNVTDNVLLGIYATYA NAELQDTLLSQESDNFQIGVYSQIKIAPTWELNLRAYGQLGQTDQRVSNIAGINTSDFDK KFFGVSANVGKVFDMDNGFFLKPFGGVNYYYSHTPSYTERGTILAQSVESNTNNSVSLEL GLEARKYFSSSSYLFVTPKIEQYIINNGDDYVGRFVGSSTSFSIAGEDKKKTYGQLVIGG NLEITDALSLNAGIGAKQILAGKVDSKNETYISGNVGIKYRF >gi|197283002|gb|ABQU01000048.1| GENE 8 8311 - 9144 1010 277 aa, chain + ## HITS:1 COG:HP1092 KEGG:ns NR:ns ## COG: HP1092 COG4786 # Protein_GI_number: 15645706 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Helicobacter pylori 26695 # 1 277 1 269 269 258 50.0 1e-68 MQGGFYSSVGGMVTQINRLDVIANNIANANTTGFKRDDVVIGDFMRLYEQHKEFLPIEDQ TKDAAKFYNRSLNRVPQIVEEFTDRSAGGVVQTENTFDFALSRENAYFMIETPEGIRFSR DGSFVLNEEGRLVNKEGYAVLPREYIESPQYIDFVDGFQVEVDSDGNIYNRSLTNEELDE ALLGGNIAVVSFENPKFLQKVGDNLYKYPEERMNEMEVLERSGAVRQGFLEKSNINVVYE MTGLIETNRLVEAYSKVLKTHMDDLNTEAITRLAARA >gi|197283002|gb|ABQU01000048.1| GENE 9 9157 - 9948 1126 263 aa, chain + ## HITS:1 COG:jhp1492 KEGG:ns NR:ns ## COG: jhp1492 COG4786 # Protein_GI_number: 15612557 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Helicobacter pylori J99 # 1 262 1 262 262 343 69.0 1e-94 MMRALYTATTGMLGQQLQIDVTSNNISNVNTFGYRKERAEFADLFHQVLQYAGSSTSETT LSPTGIEVGLGVRPTSVQKIFSQGNFKETENNLDIAITGNGFFQIELPDGTIAYTRDGSF KLDDEGNVVNSQGYLLVPNITIPDDATQVNIGTDGTVTVVQGNETEVNELGQIETVNFIN PAGLHALGDNLYLNTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLIVGQRAY EANSKSIQTADSMLQIVNQLKRN >gi|197283002|gb|ABQU01000048.1| GENE 10 10370 - 10804 524 144 aa, chain + ## HITS:1 COG:HP1559 KEGG:ns NR:ns ## COG: HP1559 COG1815 # Protein_GI_number: 15646166 # Func_class: N Cell motility # Function: Flagellar basal body protein # Organism: Helicobacter pylori 26695 # 5 144 2 140 140 145 58.0 3e-35 MSIFNFSQARGLAQEALDYRSLRRDMISSNIANVSTPMYRPKDINFEQMMAKKADEVFNR SKDMTLDLALTNSNHLLPLEEMDLSRTTMFYRDGHLARNDGNSVDLDIETSEMAKNDIMY QALVGALRKQGGIFSNAIESSKSL >gi|197283002|gb|ABQU01000048.1| GENE 11 10815 - 11315 528 166 aa, chain + ## HITS:1 COG:HP1558 KEGG:ns NR:ns ## COG: HP1558 COG1558 # Protein_GI_number: 15646165 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Helicobacter pylori 26695 # 1 165 1 160 161 218 72.0 3e-57 MFLSSFDISGYGLSAQRQRVNLISSNIANANTTRTDEGGPYRRRELILKAFNFDKVLNQK YENSNNLLKYEDPLDEMDSFDEQREPKPTLMSVYVDKIVRDDSQPKMKYEPSHPDANSEG YVAYPNINPVVEMADLIEATKAYQANVAAFQSAKNMATTAISMFQA >gi|197283002|gb|ABQU01000048.1| GENE 12 11326 - 11643 374 105 aa, chain + ## HITS:1 COG:HP1557 KEGG:ns NR:ns ## COG: HP1557 COG1677 # Protein_GI_number: 15646164 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar hook-basal body protein # Organism: Helicobacter pylori 26695 # 36 105 40 109 109 87 72.0 5e-18 MEINKYGIDPEKLNSQLKDVPNLSPNNNANSSDKTFGSMLKDAFDEVNTHQKTSEQVMAD MATGQIKDIHQAAIAIGKAENSMKLMLEVRNKAISAYKELIRTQI >gi|197283002|gb|ABQU01000048.1| GENE 13 11694 - 13412 2100 572 aa, chain + ## HITS:1 COG:HP1556 KEGG:ns NR:ns ## COG: HP1556 COG0768 # Protein_GI_number: 15646163 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Helicobacter pylori 26695 # 18 568 47 599 615 445 43.0 1e-124 MIVGGFCIFLGTIFYHIFADRKLPNLQAKRIESAIRGSIYSSDGFLLASSKKVYKAVVNT YNIDPQKKELFINLFSIYSKIPKQEIAEKLQDKGNVVLSYDIDSKTASYLKQLSIKLNAL DVFRAYENENGHIFKYGLSVVESGESRDYLYEDTMEPILGYINKQNQEDITKVSGVKGIE KSFNEELEPLSDLLMVGQRDIGFNVILNKDSTFKERSDGYNVISSIPLKLQKKIEQVIDD SRKILNAKEIIVGIMESKTGKMISLASSARFNPNVITKEDYPNLNANAIEYSYEPGSVIK PIIYSILLDKKLIEPSEIIPLENGRYKLHNFYITDTHRLQEASIEEILLYSSNIGMAKIA QRLMADEYYEGLKAFGFGEKSGIDLPYERVGVIPDIRRLRSEVYRATVSYGYGLRTTFMQ MLKAYNTIVNDGVAYEPYLVEYIQDSKGVRYKLKHQMPTRILSDKVANEVKNTLIKVVTQ GTGRTAQVKGVTIGGKTGTAHIAQGGQYVRKYNSSFFGFVSDEKGNEYTIGISVFEPNET EAYFASITAVPLFKEIVELLIKENYLYPLNTQ >gi|197283002|gb|ABQU01000048.1| GENE 14 13375 - 13602 80 75 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFNLSYLFLVISIDLPLCYTKAYMLINQNTLYTLTIGNPKCPQTRLIKHSQCIKLLIFIL CCNFIEYLKDTNSFP >gi|197283002|gb|ABQU01000048.1| GENE 15 13616 - 13840 298 74 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239524421|gb|EEQ64287.1| 30S ribosomal protein S15 [Helicobacter pullorum MIT 98-5489] # 1 67 1 67 391 119 83 1e-26 MQFANKKELEKIPQDERGIHKDTSAKNLYLELYPKKSGVSKTFYYRYCQDNKLYAINLGK YSETFLLIPQSSSF >gi|197283002|gb|ABQU01000048.1| GENE 16 13993 - 14157 158 54 aa, chain - ## HITS:0 COG:no KEGG:no NR:no ATLDEKVILISGYSQNSIKALLKVLNDKMNVENISLQIVSEAIKPYEIYLEKEF Prediction of potential genes in microbial genomes Time: Tue May 24 02:26:35 2011 Seq name: gi|197283001|gb|ABQU01000049.1| Helicobacter pullorum MIT 98-5489 cont2.49, whole genome shotgun sequence Length of sequence - 11726 bp Number of predicted genes - 17, with homology - 15 Number of transcription units - 10, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 676 419 ## Bmur_1425 hypothetical protein - Prom 850 - 909 5.3 2 2 Op 1 . + CDS 1082 - 2275 2047 ## PROTEIN SUPPORTED gi|239523764|gb|EEQ63630.1| 30S ribosomal protein S15 3 2 Op 2 . + CDS 2326 - 2568 276 ## COG0675 Transposase and inactivated derivatives + Term 2817 - 2867 1.3 - Term 2435 - 2463 -0.9 4 3 Tu 1 . - CDS 2700 - 3269 397 ## COG1988 Predicted membrane-bound metal-dependent hydrolases - Prom 3302 - 3361 2.2 - Term 3287 - 3329 4.6 5 4 Tu 1 . - CDS 3395 - 3643 332 ## gi|242309766|ref|ZP_04808921.1| predicted protein 6 5 Op 1 . - CDS 3753 - 4160 394 ## gi|242309767|ref|ZP_04808922.1| predicted protein 7 5 Op 2 . - CDS 4175 - 4399 387 ## gi|242309768|ref|ZP_04808923.1| predicted protein 8 5 Op 3 . - CDS 4401 - 5321 837 ## Dacet_0665 MreB-like ATPase involved in cell division - Prom 5353 - 5412 10.8 9 6 Tu 1 . + CDS 5625 - 5750 66 ## + Term 5944 - 5982 0.9 10 7 Tu 1 . - CDS 6138 - 6551 330 ## gi|242309770|ref|ZP_04808925.1| predicted protein + Prom 7011 - 7070 4.8 11 8 Tu 1 . + CDS 7193 - 7375 114 ## gi|242309772|ref|ZP_04808927.1| predicted protein + Prom 7588 - 7647 5.2 12 9 Tu 1 . + CDS 7707 - 7805 81 ## + Prom 7856 - 7915 9.1 13 10 Op 1 . + CDS 8161 - 8955 696 ## JJD26997_0974 hypothetical protein 14 10 Op 2 . + CDS 8957 - 9616 653 ## JJD26997_0973 putative cytoplasmic protein 15 10 Op 3 . + CDS 9600 - 10604 952 ## SYN_01869 conjugal DNA transfer protein 16 10 Op 4 . + CDS 10614 - 10859 181 ## gi|242309777|ref|ZP_04808932.1| predicted protein 17 10 Op 5 . + CDS 10873 - 11725 925 ## JJD26997_0968 hypothetical protein Predicted protein(s) >gi|197283001|gb|ABQU01000049.1| GENE 1 1 - 676 419 225 aa, chain - ## HITS:1 COG:no KEGG:Bmur_1425 NR:ns ## KEGG: Bmur_1425 # Name: not_defined # Def: hypothetical protein # Organism: B.murdochii # Pathway: not_defined # 2 225 12 218 499 136 38.0 4e-31 MNSGYTENGSKAYLSTKNNLLDLFAKMGAWRYRVEIEVDSKGQIIFNNDEPFKILLKSYL TAPKETLCSLMYLRDIRGGLGERKLFRLFLIYLYLKRDDKQDLLDKTLNSLFDIGRYDDI IFILYQLHLAGIKKEIFYNKIKTQFFKELNGKSSISLLAKWLPSENTSNKQTILMARFVR EKIFEIDSKTYRKALSKLRAEIKLIENNLRERDYSFNYSQIPSLA >gi|197283001|gb|ABQU01000049.1| GENE 2 1082 - 2275 2047 397 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523764|gb|EEQ63630.1| 30S ribosomal protein S15 [Helicobacter pullorum MIT 98-5489] # 1 397 1 397 397 793 100 0.0 MQFVNEKELKRLPQDKRRRHKDASVKNLYVEVNPNKYGATYTFYFCYRQSNKVNVVYLGK YPAISLMDARLKANELNLRLDKNEVLKIETRREKRNKERILREIFEEWKQIAIKGKINQD FARPLELHIINQYGNKPVADLTKQDVLKSFDKLYLEDKRETIKRTYIHLKNLIKYALNRD YLQATNLLTLDIDTLYGKLTPTPFRAITDLDTFRDLLLAIDSYNGNLFVKVALQVSPYLF LRSSTMRNLKWEYLDEKEKILKIPANIMKAKEEFLVPLSDSVLDKILAIKELTYPSPYIF PSDISKGKALAENTLNYAIKRLGFGELMVYHGFRSTASTFLYENKKNHKQDSEVIELCLD HRERNKVKAVYNRSLRLEDRRELMQWWSDYIDNLKMS >gi|197283001|gb|ABQU01000049.1| GENE 3 2326 - 2568 276 80 aa, chain + ## HITS:1 COG:Ta1471 KEGG:ns NR:ns ## COG: Ta1471 COG0675 # Protein_GI_number: 16082436 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Thermoplasma acidophilum # 4 60 160 217 237 58 50.0 3e-09 MSKKEKLTLSQRVYQCENCGSILDRNYNASLNLQSLAQEKVGLVQAEFTPEDLTALLDDL ATNHLVTSKVETGIQQKSYL >gi|197283001|gb|ABQU01000049.1| GENE 4 2700 - 3269 397 189 aa, chain - ## HITS:1 COG:YPO1717 KEGG:ns NR:ns ## COG: YPO1717 COG1988 # Protein_GI_number: 16121977 # Func_class: R General function prediction only # Function: Predicted membrane-bound metal-dependent hydrolases # Organism: Yersinia pestis # 45 155 42 137 182 64 40.0 1e-10 MLAKTHSTFALAIASCGVYCSYKALGFEIPNVSLVAFYGAVYFGSLFPDIDEPNSKIGRR FVGVSNLLNAIFGHRGFTHSLAFIVLLGIITGFLLTLDSVHSYLASMKVESLNAPFYVFW GFIFGNILHLLGDSMTKSGIPLLMPFSQKKFFALPKSMRFVTGKSVDLGIAFLSLFFFIL FNALLLNGY >gi|197283001|gb|ABQU01000049.1| GENE 5 3395 - 3643 332 82 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309766|ref|ZP_04808921.1| ## NR: gi|242309766|ref|ZP_04808921.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 82 32 113 113 130 100.0 2e-29 MTFQEYFEYREKQHQAEEQRKRELEQRKLEQKEVEEFFQGNYAGKRVINVQQNGMQCKKL IQTHQHIVLCPDGMSLVIRPSR >gi|197283001|gb|ABQU01000049.1| GENE 6 3753 - 4160 394 135 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309767|ref|ZP_04808922.1| ## NR: gi|242309767|ref|ZP_04808922.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 135 1 135 135 197 100.0 2e-49 MVRTNQKATDKNEMELRVIIKDQRVMEIINSIDFGFKRKFVESAILHFAQNQPSIKLHFD GITKPNKRGRKPKDNYNNSEGNGSNGGGIDMGNNVTLKNNSSVVKSESQTKEIVSNTGVT KTSAEESQSQMMFNF >gi|197283001|gb|ABQU01000049.1| GENE 7 4175 - 4399 387 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309768|ref|ZP_04808923.1| ## NR: gi|242309768|ref|ZP_04808923.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 74 1 74 74 123 100.0 4e-27 MSKIQINKETNQLTIDFSQENTEDKIVFQNIAEMLDNIREGAEALVICIALENYIQSEQC YRLFTKPAVEEIPF >gi|197283001|gb|ABQU01000049.1| GENE 8 4401 - 5321 837 306 aa, chain - ## HITS:1 COG:no KEGG:Dacet_0665 NR:ns ## KEGG: Dacet_0665 # Name: not_defined # Def: MreB-like ATPase involved in cell division # Organism: D.acetiphilus # Pathway: not_defined # 6 299 2 305 317 123 31.0 8e-27 MDAQRIAIDIGYGDTKVMANGKLFKFPSAISQVGESMLQLDFKSDNPIFEGIEYRVGSKA LMEAVATRGYLFLKRYSPLLIHNALLEAKFDLEAPIEIATGLSIVNNLEAQNFLEIISNF TINQIQIKPRVFLFAQGQGLYYQSGLDKEDRACVIDIGYNTLDFLVFENGKPRVDLCFAN KKGANLAITNLQKFLIKEFRVDFNEQEAKEVFVKKEIEIAGKKIDFSDVINSIMQRYVRT ITDEVFSKAEDILSKTKNIVIGGGGAYFLKKEYLEDLHKANYLFLDNPEYSNVLGYYKSA FKTKGV >gi|197283001|gb|ABQU01000049.1| GENE 9 5625 - 5750 66 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MENLRNRIGNVMEYLWIRFGVDMEYFIREGKKRKSFFNIVK >gi|197283001|gb|ABQU01000049.1| GENE 10 6138 - 6551 330 137 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309770|ref|ZP_04808925.1| ## NR: gi|242309770|ref|ZP_04808925.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 137 1 137 137 216 100.0 4e-55 METQETQETQATKKDKTHIEKCLETYIFRFSIKLFLGEVANFGVANVKAYLKHIFGEDKG TFVYYKYGRKIYSRIKERMKKQKLRVKQSEKIQELQAKYPNLDILKAFTYARLNGKFEVE NEDIEIFENIIKLLYKK >gi|197283001|gb|ABQU01000049.1| GENE 11 7193 - 7375 114 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309772|ref|ZP_04808927.1| ## NR: gi|242309772|ref|ZP_04808927.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 60 1 60 60 105 100.0 7e-22 MGTKMANMNEVKYKMGIFKKLCPKRIKRDDINLIELLRDEFGHIEYRAKSRDLKGTNLSQ >gi|197283001|gb|ABQU01000049.1| GENE 12 7707 - 7805 81 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MILAKRFFYTLKLFNSIAKINPRDNQERKQQI >gi|197283001|gb|ABQU01000049.1| GENE 13 8161 - 8955 696 264 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0974 NR:ns ## KEGG: JJD26997_0974 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 23 264 18 257 257 228 48.0 1e-58 MRTQKPLAFLLLCSSVAFGATNNAFYNDTKRGWHYYEAEPQVQEQEKMTKKQEKEKKGLD DEAFMKSVPLNALDSLTVKEYTETFDRVKSIATMKPTKENVKILQAMNKWQTEQSERFAK VWAINLLEDPNLEFPEVADSKFAKNQKMIVEDKRTKEFFEKNKENLAFVVFYSGKNQEGY RNQKAIYDVIEGKYGIEAKYIDLDTNPDLIQRFNLTAFPENFFVYRNSKNEAIWHRVKAG HATLNTIVDTTIFLFDNAILEEDK >gi|197283001|gb|ABQU01000049.1| GENE 14 8957 - 9616 653 219 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0973 NR:ns ## KEGG: JJD26997_0973 # Name: not_defined # Def: putative cytoplasmic protein # Organism: C.jejuni_doylei # Pathway: not_defined # 1 211 1 211 224 201 47.0 1e-50 MKKLFLILSLSASLFAKETDNILNLGKTYEFKERDILELIQEHLTKNRPELEQKLLGQRD KLKENIKNWRPKDMVKLTPAPKNNTFSPDMTWTLTKDIKDHEGNIIYPQGFSFNPAKYAR LSYGIVVINANDKEELEWLEKGGYLNTIAYRIFLSEGSYYEMIQKHKQDFYYLLPEIAKR FQLKHTPSIIKQEGEEIIIQEVCLKCKQENKGSQNEIQK >gi|197283001|gb|ABQU01000049.1| GENE 15 9600 - 10604 952 334 aa, chain + ## HITS:1 COG:no KEGG:SYN_01869 NR:ns ## KEGG: SYN_01869 # Name: not_defined # Def: conjugal DNA transfer protein # Organism: S.aciditrophicus # Pathway: not_defined # 26 334 31 339 339 257 41.0 4e-67 MKFKNKLLGMGVSIALSIGILTPQKAEAVCVVKPTQIVETMFEMCWTCVFPISIAGIPVI QGHLPDPLGTVSTPICLCPAPPPLFIRIGIPIGYWEPSRSIDVTKDAYCFAGMGIDMGIS STQRGTKGDAADRTRTFFHSHYYIYPVFETIGMFVDTMCLRGSQGIDIAYMTEVDPLWND DQLGALISPEALLFGNPITNFACIADSISSQVNVALDPLFWCKGSWGNTYPLTGNTNTKN YVEDSASVAASMIYKLHRQLILWNGATASALCGEHPLPIWLKNAYRMQLMYPIPHATATG IGQSGIIWTPAKNPQMVGDNFNYLLFKKVDCCAL >gi|197283001|gb|ABQU01000049.1| GENE 16 10614 - 10859 181 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309777|ref|ZP_04808932.1| ## NR: gi|242309777|ref|ZP_04808932.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 81 1 81 81 127 100.0 2e-28 MDIRNHKKELLFSIIIKKIDLDSLLEMIKEQLKTKNIPSGKIILIPKTNYDTKMIFLEFE EFYWDLDKETLRQMQNTLPLF >gi|197283001|gb|ABQU01000049.1| GENE 17 10873 - 11725 925 284 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0968 NR:ns ## KEGG: JJD26997_0968 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 1 284 1 294 314 164 38.0 5e-39 MKKQAFLFLTLFGTLCLAQTQAEKSELYKSKLPDFQMGVEIDPKELKERSKEIKPTELLE VMDTNSTKFKEQYGELKHLESKEAERHAKEIKEYSDSKGFKDLVEQNENHLLYDKEIDWG KYVATPQTEQQMQSTQPKNLNQFLSQNDKIFIVISESMPKETILNYFRTLENVNTDVTFI LRGVVGNDISKITPTFNYVRDLLIKDKNGKPDDPKNRFHYQVDINPKVTQKFKIQKVPAV IYIQNYDYSLQEPTELKMENSNERYYVAYGDVGIDYALREINKK Prediction of potential genes in microbial genomes Time: Tue May 24 02:27:37 2011 Seq name: gi|197283000|gb|ABQU01000050.1| Helicobacter pullorum MIT 98-5489 cont2.50, whole genome shotgun sequence Length of sequence - 3309 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 63 - 122 8.4 1 1 Op 1 . + CDS 168 - 623 442 ## gi|242309779|ref|ZP_04808934.1| conserved hypothetical protein 2 1 Op 2 . + CDS 638 - 1351 440 ## gi|242309780|ref|ZP_04808935.1| predicted protein 3 1 Op 3 . + CDS 1362 - 2879 1561 ## CCC13826_0959 hypothetical protein 4 1 Op 4 . + CDS 2889 - 3309 330 ## gi|57505048|ref|ZP_00370997.1| lipase family protein Predicted protein(s) >gi|197283000|gb|ABQU01000050.1| GENE 1 168 - 623 442 151 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309779|ref|ZP_04808934.1| ## NR: gi|242309779|ref|ZP_04808934.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] # 1 151 1 151 151 270 100.0 2e-71 MNPKDFIEQLKDYADIADASYAMLEYIKKNTESDRKNNVFKADNLTFGDKLQQDIKVKDD KGNLLYIKPKGTNTAYACAIEARFNQEKIGSLCIPLTNKCLIEKDKISNNDITQVKLDSK LSKRTIDFTNRFRILVHQENIPMDLGNIKCG >gi|197283000|gb|ABQU01000050.1| GENE 2 638 - 1351 440 237 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309780|ref|ZP_04808935.1| ## NR: gi|242309780|ref|ZP_04808935.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 237 9 245 245 444 100.0 1e-123 MIFIPLLCIWLSLLILIFTINKIFKKKIPLVWSFYAFCLCCVIVVVLLFGISFKYLDPDY YRFKKVCQNNGLNLYNEQLYKEIQEANIIIKADKERLYREIENEIESNNILQDKLKYFLQ TNIVGTASKEEIDYYRKKFIINLLHERYIIPPIILSNGKKAQKESMRSWSDINEKGNIYL REGEVYYYLEDKQKIPVAIIGFYIYYAPSIKWILPSDAGIGGIERYDTEYCGKSNFN >gi|197283000|gb|ABQU01000050.1| GENE 3 1362 - 2879 1561 505 aa, chain + ## HITS:1 COG:no KEGG:CCC13826_0959 NR:ns ## KEGG: CCC13826_0959 # Name: not_defined # Def: hypothetical protein # Organism: C.concisus # Pathway: not_defined # 13 434 11 386 1079 117 28.0 1e-24 MSKNIQTHNAKIDLIKKFLNYANITDASYAMLESVFEKAIKDESGNEIEKELDGLTLKAT TINENNQTFLTTYARAIEARFMQDSKNPQGKKIDNKITNVSKEIDQNQDKNGIHNDTGKL IKMYPKELTDRTIKFTNRFKLLKHQENTDSGFSATLFEDTEDNKQKIFAIRGTEFPSGFS NDVLDSDANLALSSLPSNQYIDMIKFYTQCIVDKHIAESTPLIITGHSLGGALAQLLTLS LATTESANNVKEVYTFNSPGAKNLRIDEDTLGRVYEIDSTILNAKDKERALFKKIRGYEY GEKDNLLRDTTLIGYDNHLFNAIYKYFTNNENLKEHSILVRTLTTTNIKPITYMATTSSI TYTYKIFDINQTFINCLEILKANNRLKQPLACQDSIHHIESDDDSNPDNNQWQDELIQNL GTDIDGKHYYINLGAFSGSHYILPTIHALQRVLMLLNSGNIDNLLEYNKIKDLKDESMFL RTTRERKNAERLLHTQPSSLYNLYY >gi|197283000|gb|ABQU01000050.1| GENE 4 2889 - 3309 330 140 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|57505048|ref|ZP_00370997.1| ## NR: gi|57505048|ref|ZP_00370997.1| lipase family protein [Campylobacter coli RM2228] # 42 140 594 690 1247 74 43.0 2e-12 MPNNANHFLDNYHNDTSNLTKHIASQLPKEIGGYDRFKENTLDFYTLLDSLHSHNAYYTY VDSEKIENLSLQDLQDESKLGYFYCLYYCNPLIVLDNENKTTLNEKIAIDNFGYKDDFYL SFIAHKDSLSNEYLQARKAL Prediction of potential genes in microbial genomes Time: Tue May 24 02:28:09 2011 Seq name: gi|197282999|gb|ABQU01000051.1| Helicobacter pullorum MIT 98-5489 cont2.51, whole genome shotgun sequence Length of sequence - 8193 bp Number of predicted genes - 9, with homology - 8 Number of transcription units - 4, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 745 578 ## gi|242309782|ref|ZP_04808937.1| predicted protein 2 1 Op 2 . + CDS 732 - 1493 638 ## HH0199 hypothetical protein 3 1 Op 3 . + CDS 1567 - 2319 657 ## CJE1136 hypothetical protein 4 1 Op 4 . + CDS 2295 - 2423 71 ## + Term 2592 - 2636 3.2 - Term 2388 - 2427 1.6 5 2 Op 1 . - CDS 2549 - 3157 309 ## CCC13826_0025 hypothetical protein 6 2 Op 2 . - CDS 3147 - 4271 659 ## COG1106 Predicted ATPases 7 3 Tu 1 . + CDS 4492 - 4758 338 ## gi|242309788|ref|ZP_04808943.1| predicted protein + Term 4767 - 4796 -0.2 8 4 Op 1 . - CDS 4795 - 7533 2783 ## JJD26997_0941 Cju26 9 4 Op 2 . - CDS 7549 - 8193 353 ## JJD26997_0940 lectin C-type domain-containing protein Predicted protein(s) >gi|197282999|gb|ABQU01000051.1| GENE 1 2 - 745 578 247 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309782|ref|ZP_04808937.1| ## NR: gi|242309782|ref|ZP_04808937.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 58 247 1 190 190 308 100.0 2e-82 DIPDNVIRIETEDGSGEYIEIEFDENDNLKDINNDDELNDLLHQAKDILYELSPLSSMES AYDNLTAGEYKDALIDTITILPMAKVFKAKTIANKIGNIISKDKNKKDVRIKANTNKNSN TNAGKKIKSKYANRQEVINVIENKYGLKTSNQLNKAGHKGIGSNSNVYWAKDNKQIKEIW DDIIEGAEILEDRINPKTGERIPMRKLSDGTILRLRKTSRTGGSAIDIGRKKPNNVIHNK AKEDGDW >gi|197282999|gb|ABQU01000051.1| GENE 2 732 - 1493 638 253 aa, chain + ## HITS:1 COG:no KEGG:HH0199 NR:ns ## KEGG: HH0199 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 31 253 43 267 267 269 64.0 9e-71 MAIGRVMHENVVLFPDFDDIFREIKRDEFWEMQLFLQIPNLTKTDILEYFEYIALGYSIG GVECDCLYIPMSYLDSKDEVIENDSNPTYISEYINIVGQLFLGDYIDFGSYYDNDDREKI DYPTNLSYYKEDKYQAWIYFRDNFFYTGAYNKGCEDDILIYNGKEYSEQDCPTYFNTETN NRTYCGYSTMYSPTSWDTPKYWSQYNIWVARTPKGDEYFEKVLAPRFYEKYKDLEVEIDD NGNIIKWIGEINR >gi|197282999|gb|ABQU01000051.1| GENE 3 1567 - 2319 657 250 aa, chain + ## HITS:1 COG:no KEGG:CJE1136 NR:ns ## KEGG: CJE1136 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_RM1221 # Pathway: not_defined # 57 250 50 244 248 246 67.0 8e-64 MTKLKVIYAMGNPIFFYKEANNKIGYSYNEILDKTLNGYTYCFEMDLLLNYLQHATKTDI LLAFKYVFLKIVDNEFFARHELDSNIVQKYYSDTLGNDFFPNTPNPTYISEYINVVGQLF LAGYIDFGSYCDDNDRDKIDYPTNLSYYKEDKYQAWIYFRDNYFYANRFNRDLDEPDSTD EEGYSLILDNASWDTPKYWSQYNIWVARTPKGDEYFKKVLAPRFYNKYKDLEVEIDDKGN VIRWIGQINR >gi|197282999|gb|ABQU01000051.1| GENE 4 2295 - 2423 71 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDRANQSINQLKIINDFNYQKANNTLAKAIRAMAKPFKTKVT >gi|197282999|gb|ABQU01000051.1| GENE 5 2549 - 3157 309 202 aa, chain - ## HITS:1 COG:no KEGG:CCC13826_0025 NR:ns ## KEGG: CCC13826_0025 # Name: not_defined # Def: hypothetical protein # Organism: C.concisus # Pathway: not_defined # 3 201 2 180 197 63 30.0 5e-09 MRNKRIKTKISIWCEGKTELNYFDSIKSIIAKENINIECEELKNKSYKNIWIKLSREKSL YDKIFIAVDLDRANNDEVELENLQRLISDVKKSKGQTFLFLSYENFEVWLMYHFEDNSRN NKANFLKTMGFESSKDFKANSSNLYNQIVSKGGSIENAENYFRKRDLFCNRDCSINKNNI NHIQSNLYYFRDLIEELALKRK >gi|197282999|gb|ABQU01000051.1| GENE 6 3147 - 4271 659 374 aa, chain - ## HITS:1 COG:FN1198 KEGG:ns NR:ns ## COG: FN1198 COG1106 # Protein_GI_number: 19704533 # Func_class: R General function prediction only # Function: Predicted ATPases # Organism: Fusobacterium nucleatum # 1 360 1 388 420 61 22.0 3e-09 MILKFEISGLYSFGITKQEISFTSKPKNRIRNTKYEYNFNLLQAQRPMKSALFFGGNASG KTNFFVAVKILLNIIKYGLSHTLREHITDNAFNKNSDSIALGIELSDNKKSVFGYFIEFD SQKVVRESFRKDSKDIFLFEKDKATFKDEQLEYFFSRRLSENILYFLKDFEIKEYEEFMN IVNGIEVYMSSSYSKEYMLDFNETRKNYFIENKSGILEIFKILDKTVDDFSFEELEKEDK SVYRIYFVRNEQHFSYQVESEGIKKIVQLADKFLEVIKGGKVIFIDELDSSISTLALIKI FNNLINTEENANGQVIVSSHNLLLFDVSFLNSQQIFLVQKNSELETIIKNYYDFDIRSEK KRAYIDYLKGLYEE >gi|197282999|gb|ABQU01000051.1| GENE 7 4492 - 4758 338 88 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309788|ref|ZP_04808943.1| ## NR: gi|242309788|ref|ZP_04808943.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 88 3 90 90 134 100.0 2e-30 MGLFSFFKRKKREISDEEIDFFVKVKENYKNFRIAMPYEKEIKSYKNDIDSYSHFETSNF SENFRDNIDIITDPAYSSVQGNIYHDNN >gi|197282999|gb|ABQU01000051.1| GENE 8 4795 - 7533 2783 912 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0941 NR:ns ## KEGG: JJD26997_0941 # Name: not_defined # Def: Cju26 # Organism: C.jejuni_doylei # Pathway: not_defined # 1 838 1 842 922 370 31.0 1e-100 MRKFLFLFVFFGAVAFGATNVPDSNLIYTWGYASLMNETLQAVRGVIQEGNNLFKICLIL AFIFMFFKVIADPKKNVLFEGAKISLFSLLIWWSFLYAPNDSKHRYMIFDETTTEAYMVD ELPIGIGHLTSLVSRIERAMLIGMEKHYSTPDSLSMRNAGIGFSLTSMMKLPMVARSSDA VFNENMNNLVGVCYAFNEKFDPDLRKQVLNSENLIEDLVQLKNFPLTNSIMVQINDGTQT RLGSCAELSAEIMNKMPQELTKLERNYVASLGFTGQTGANVISQRIQGVADIYKSNWTNS RDMIQQFMLVNSMRDGIKNMEKMYGMEEGAMATPASIAHYNLFNQMQAQGSLAQTYLPQA KAYLTVLIVGLSWILALFSVIFMDFRHLKLYITLLLWLVLWTPILSIINYFNDISLSTVF EEMKNAGDGMAITFNSNTAFFTKIQEQSNFINYLVMATPLLAFALVKASEMGFVSIASSL SQSLQGGARAAASFQQQQAFSTRSDIAVGDNVYSSYLGQDVVASSRFQNGLSVVNTLTMG KDGQISAQSNIENGMAGLTVDNNGNVQGANHRDVNMQVANQMQQSASETQAKSVSSKFSN MSQESQQAALAETFQALRNSSKTVQDNFVANFTESLRDSKQFNEKEIDAIAAKVEASAGV GFKFFGNGASIGVSGSASTASQDEYSKTTAKDTTDSNTKAISEAFMEAATKTDGLNSSLT KSFSNSENTELNQMAQKMEQYQEVNSFTRNINENNLNDFIETMAKIRYGEETWENANVVD KQDMANNVLTSLKGVAGYGIENNVNTKGTDYYKGEHNLNSIHNQNQGMVNEKDGANIGSV AGSKVNQNLQNQVGESHIRERVVDKHIEGKKNETGLTNWGFIENSKGNSKNIALEKEAMN NLLDKNDVFRRD >gi|197282999|gb|ABQU01000051.1| GENE 9 7549 - 8193 353 214 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0940 NR:ns ## KEGG: JJD26997_0940 # Name: not_defined # Def: lectin C-type domain-containing protein # Organism: C.jejuni_doylei # Pathway: not_defined # 2 213 520 727 730 228 57.0 8e-59 GKLQCSPHPCLVNSNGGDPIIESSGEPAGINDADNNGWDENGNCSGEILIFNGKDHRCRH KDKLLGLTGGGCCDKDKVFMGLVSCKESEKNLAKLKDQKRCHEVGEYCSKKINLGFTKVC IQYSKSHCCFNSLLGRIFQEQGRQQLGIGWGGGDSPNCRGFTPEQFQKLDFSRINLQEFI DTLTVQVDDSFAQRQAEKIKDKVNANLNAATGKN Prediction of potential genes in microbial genomes Time: Tue May 24 02:28:57 2011 Seq name: gi|197282998|gb|ABQU01000052.1| Helicobacter pullorum MIT 98-5489 cont2.52, whole genome shotgun sequence Length of sequence - 23525 bp Number of predicted genes - 27, with homology - 27 Number of transcription units - 7, operones - 6 average op.length - 4.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 1123 1038 ## SYN_01866 hypothetical protein 2 1 Op 2 . - CDS 1138 - 2607 1307 ## JJD26997_0938 putative TraG 3 1 Op 3 . - CDS 2595 - 3152 481 ## JJD26997_0937 putative type IV secretory protease 4 1 Op 4 . - CDS 3160 - 3714 707 ## gi|242309794|ref|ZP_04808949.1| predicted protein - Prom 3738 - 3797 11.8 + Prom 4533 - 4592 6.4 5 2 Op 1 . + CDS 4630 - 4974 391 ## gi|242309795|ref|ZP_04808950.1| predicted protein 6 2 Op 2 . + CDS 4974 - 5279 303 ## JJD26997_0929 putative sex pilus assembly 7 2 Op 3 . + CDS 5280 - 5840 513 ## JJD26997_0930 putative conjugative transfer protein TraE 8 2 Op 4 . + CDS 5851 - 6633 627 ## JJD26997_0931 hypothetical protein 9 2 Op 5 . + CDS 6644 - 7969 1473 ## JJD26997_0932 sex pilus assembly protein 10 2 Op 6 . + CDS 7979 - 8749 898 ## COG1651 Protein-disulfide isomerase 11 2 Op 7 . + CDS 8736 - 9737 847 ## JJD26997_0934 putative lipoprotein 12 2 Op 8 . + CDS 9750 - 10604 904 ## gi|242309802|ref|ZP_04808957.1| predicted protein 13 2 Op 9 . + CDS 10601 - 11053 413 ## gi|242309803|ref|ZP_04808958.1| conserved hypothetical protein 14 2 Op 10 . + CDS 11053 - 13680 2103 ## COG3451 Type IV secretory pathway, VirB4 components 15 2 Op 11 . + CDS 13670 - 13939 301 ## gi|242309805|ref|ZP_04808960.1| predicted protein 16 3 Tu 1 . - CDS 13947 - 14507 458 ## gi|242309806|ref|ZP_04808961.1| predicted protein - Prom 14626 - 14685 9.6 + Prom 14441 - 14500 5.3 17 4 Op 1 . + CDS 14534 - 14743 208 ## gi|242309807|ref|ZP_04808962.1| predicted protein 18 4 Op 2 . + CDS 14740 - 15447 624 ## gi|242309808|ref|ZP_04808963.1| predicted protein 19 4 Op 3 . + CDS 15441 - 16259 755 ## JJD26997_0840 hypothetical protein + Term 16260 - 16287 -0.1 + Prom 16305 - 16364 3.0 20 5 Op 1 . + CDS 16384 - 17226 763 ## gi|242309810|ref|ZP_04808965.1| predicted protein 21 5 Op 2 . + CDS 17226 - 18608 1275 ## JJD26997_0837 DNA transfer in the process of conjugation and F pilus assembly protein 22 5 Op 3 . + CDS 18609 - 20927 1608 ## JJD26997_0836 hypothetical protein + Prom 20929 - 20988 2.2 23 6 Op 1 . + CDS 21024 - 21239 256 ## gi|242309813|ref|ZP_04808968.1| predicted protein 24 6 Op 2 . + CDS 21236 - 21703 373 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 25 6 Op 3 . + CDS 21681 - 22190 528 ## COG1525 Micrococcal nuclease (thermonuclease) homologs + Prom 22237 - 22296 4.6 26 7 Op 1 . + CDS 22323 - 22742 373 ## JJD26997_0964 putative thioredoxin 27 7 Op 2 . + CDS 22820 - 23525 466 ## Bmur_1425 hypothetical protein Predicted protein(s) >gi|197282998|gb|ABQU01000052.1| GENE 1 1 - 1123 1038 374 aa, chain - ## HITS:1 COG:no KEGG:SYN_01866 NR:ns ## KEGG: SYN_01866 # Name: not_defined # Def: hypothetical protein # Organism: S.aciditrophicus # Pathway: not_defined # 5 245 20 284 673 70 26.0 7e-11 MKKAFLFSLTLASSLMANDSLKEGNSTGNSLLNYFRGNTDAAINSPISNGSTLQTVDGSQ SGNASISCGGEKKNIEYMEIGYSSGASGININISIDKDYDGTKESKYNFSGVTGVCSSGY VKCNALVGCSYYEWEVKNGNIGSKEIFNSESISCYDVTVGGVATSQKQRVLQDIGGGISS YFSSSEQFIISGAKNNGNSLIYYGESYDNCSNAGSISVSRDSDLESMAQSEAASQSLTEN SVYSIFEKGTDNTTTLDKEIQSAVSGTQANVEGSLKYNQNNFSYSYTSDGQKMDNHYQAE DVKIQYCEVLTKKVDTTIFTDGTTRGESTDSNVTLVGDIRECTNNYTTCPVDTSKGESIK HNCGPIDNFEEAIG >gi|197282998|gb|ABQU01000052.1| GENE 2 1138 - 2607 1307 489 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0938 NR:ns ## KEGG: JJD26997_0938 # Name: not_defined # Def: putative TraG # Organism: C.jejuni_doylei # Pathway: not_defined # 4 393 4 396 488 259 40.0 1e-67 MEFLKTRKIIVSVVLAAMLSNTANASLSDFVSNSLDTAVLNQNAGYFKSQAGGLMSLGSS RIRFGGNNGAFTPFNVQAPSLNIGCSGIDMVFGGFSYLNFDNIVEKLKKITTAAPAFAFK IALSTLCKDCDTIMTELEKIANAINGMNFDTCTALNNWNDKITGSLASNGISTGIGAGVV GDWLSGFGEGLGKSISDFTAYIHGQGGNNQGKDGSDAVKNVFKQGSLIKYIVEGEKNRTG FFKTAMGADYEDILRDLLGDVIGFTEKNGEEVKFRKELIQGSLDITRFVEALYKGTAGEK AELEIQVWNIVENNDGTIAPPTQGTPKKVKVDNFIDAIMDRINEIIIKGRGNNKLSADDQ SFLGSLSQPTLQLINAAIANPDLNISAYSEVIAAQSFADLMNIVATEIEVEISKGINDQS IAKREGGGVTALSSGDIGEITKTFSDRFTKLRNQINVVIKQINEKNQTAIHTLREINRLV GDVQRRTQN >gi|197282998|gb|ABQU01000052.1| GENE 3 2595 - 3152 481 185 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0937 NR:ns ## KEGG: JJD26997_0937 # Name: not_defined # Def: putative type IV secretory protease # Organism: C.jejuni_doylei # Pathway: Protein export [PATH:cjd03060] # 21 184 5 166 167 129 42.0 6e-29 MENVETKTLKSSLRDYFEERKGRLKTLGKIALASLVVFVIVSAAISFITQRYTFGVFITN SIFTKTYVLLDKEHSLENLRDKIIAFDFPVDTKYYKKGTPFAKYVKCESGDFLESVGNRF FCNKKLVGVALPTDSKGIPTEHFSFKGVIPKDTFFVMGENLFSFDSRYWGFVTKENIKGV AIWSF >gi|197282998|gb|ABQU01000052.1| GENE 4 3160 - 3714 707 184 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309794|ref|ZP_04808949.1| ## NR: gi|242309794|ref|ZP_04808949.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 184 1 184 184 240 100.0 3e-62 MSENNENNELKEASKESKQEGKSTQDSKSQKVSLNLKLKKIFEDNFYTVIFTLLAVSLAL TLFQSIKENRSEKASKSVSESSINVFYVDTERLEKEFLNITIGKIASKDSEVPDLSLYND SVLHLDEIINEISLKQNALILKKSSLMSYEHLRDITDLVLEKYKNRLTELQEKSLKSNLK EPLK >gi|197282998|gb|ABQU01000052.1| GENE 5 4630 - 4974 391 114 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309795|ref|ZP_04808950.1| ## NR: gi|242309795|ref|ZP_04808950.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 114 1 114 114 167 100.0 1e-40 MEKFISANGQMNQERMLKIGILVLFAIFLVSTMAFSGNNTDSLGLTGVYDTIAEWTTDRN LTLVITTVVVVVGLVRWWQVGGMAGGVQFASLFILAVVFYNLNNIVNALQTGNF >gi|197282998|gb|ABQU01000052.1| GENE 6 4974 - 5279 303 101 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0929 NR:ns ## KEGG: JJD26997_0929 # Name: not_defined # Def: putative sex pilus assembly # Organism: C.jejuni_doylei # Pathway: not_defined # 1 101 1 101 101 101 54.0 9e-21 MAKNESGLVVINKFIDQKPMVGNWEMDVVVVFIGFCYVGFFIPQSFVVSIVIVLMGIVAT MILNKLKKAKVKGFFLHILYMLGLRKPKTYPPSYMRYFLGG >gi|197282998|gb|ABQU01000052.1| GENE 7 5280 - 5840 513 186 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0930 NR:ns ## KEGG: JJD26997_0930 # Name: not_defined # Def: putative conjugative transfer protein TraE # Organism: C.jejuni_doylei # Pathway: not_defined # 6 182 6 182 192 196 56.0 5e-49 MFQKFYKNNLDKYIFENITFRFITTILILLIVYLVWVLSTRINAQKVVFMPPKVITQEMW VTGSEVSKSYLEEMGQFVAFNLLNITKHNANSNIDNIMPLIEAQYYNQVKGELIAQTEYI INNSISRTFFVSLIDTNTKGKIVVDGVIKDIVGDKVVTSKNTLVNIGYKIAQGRFWINSI EVTEKK >gi|197282998|gb|ABQU01000052.1| GENE 8 5851 - 6633 627 260 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0931 NR:ns ## KEGG: JJD26997_0931 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 15 257 11 254 270 267 56.0 3e-70 MLKNKLLAFALFFGLSSLAFGVTIIDNPSSQTINVNVSNKSVNRIVLPSKILDTSYSKEK GISVQISGNEAFIKYVPTKKEKVRQVGNRTEVVGKPEFLYNEAKGAEIFFITEGNTYAFA LNPVDMEAETIIVNDFTSERKEILKYETENDYVATLSKITQQVLANNTPQGYKLKEKNKK LKDLKDISISYKNYYEGVLYSVHLLEVKNKTKEALILNPKEFISYAEDSPKSISIYYDNE VNHLLPLGYAKVVIITKVLK >gi|197282998|gb|ABQU01000052.1| GENE 9 6644 - 7969 1473 441 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0932 NR:ns ## KEGG: JJD26997_0932 # Name: not_defined # Def: sex pilus assembly protein # Organism: C.jejuni_doylei # Pathway: not_defined # 5 431 1 437 446 379 49.0 1e-103 MREKIENLFRKLINNDSGDVNNSEKNQKKKIIMIVAGLFIGLLLLINFTGGGETETPQQA NEKITGKFKLVDSDETAKTNWIGSASEDLDLSKRKIDSLTSANQKLSSELTEMKKVLGSL VDEKNKQEQEAKRASEKTEANKEVSVNGVNLPDLGNVDLYKDFPKPNENNNFGLKKGEIP EIVETTTEQYSTVDDALVYMKIAEKEKPKEVIKPKTLHIVPTGTITRAVLLNGVDAPTLA QAKTDPLPILMRVVDTSILPNAWQYDIKDCFIVGEGYGDLTSERAYIRTNNLSCMTNDGR HIDLEFKGAVSGEDGKIGLKGRVVTKQGALLARTLIAGFLQGVGESFGQQDTTTLVSGTG TTTVPLDQTASEAMQQGLFRGLSESAEKLADFYLKMADQISPVIEVSAGREISIITTEKI ELKTLEEQIEETTSKEQNTKK >gi|197282998|gb|ABQU01000052.1| GENE 10 7979 - 8749 898 256 aa, chain + ## HITS:1 COG:RSc2892 KEGG:ns NR:ns ## COG: RSc2892 COG1651 # Protein_GI_number: 17547611 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Ralstonia solanacearum # 8 249 22 246 248 69 25.0 7e-12 MKYLSKIGFSLMALSGILMAEQSLTERQEESLVKAIMPSTKIEKVDRAVIDGFYKAYLKN GNILYVNPYNRAIFIGDIYTAGGVNISAQEREEWKEELNKVILESLSTKKLTEHSEKIVF GKGSKDYQFVIFTDPECPFCNQVEKFLAENNATMYANFYPLSFHPNAKKWSLEILSSKDH KEAMLKIQKTQKDLGVKITKEAEAQLAKMMSLGETLEIQGTPKIFVVSGEKVVDVIDGAN IPKLEKYLKGKGNDKK >gi|197282998|gb|ABQU01000052.1| GENE 11 8736 - 9737 847 333 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0934 NR:ns ## KEGG: JJD26997_0934 # Name: not_defined # Def: putative lipoprotein # Organism: C.jejuni_doylei # Pathway: not_defined # 11 225 9 213 250 68 28.0 3e-10 MTKNKILYSSLVLAGVLSLSGCSAMLPYEDNFKCEKGLDSGVCASVTDVYELSDDMDKLR EINASGDNIPNKPKEEVDVSNVVSEDSNGLREVANSISIKQIQDGKPVIFKIKGDNTEAY YYSGRDHEHIVPNDQEVMEYLIKDNEAYKRRLNNEGDDAFKDFLYEKGANGSQRSSRGNN NSNLSHSNLSNGGIDNSSGINHLNDMEDDLSTFLEKDNLEKDSNFNKSGFGNNQAFGTNG DNIMGYGDSSYNNESNLSQRENCQSGDMQIKPINGNVKVCVYAANIRQAPSCKAKVLKVA KKGKVMYAEYEQGGWVKLSDGTFIHRSIVTIEK >gi|197282998|gb|ABQU01000052.1| GENE 12 9750 - 10604 904 284 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309802|ref|ZP_04808957.1| ## NR: gi|242309802|ref|ZP_04808957.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 284 1 284 284 423 100.0 1e-117 MIKKISIGLLLGSLALTQMWANQPNSADFSEKEKPQFVISEESFNLIKTALIKVLKENKE LKEEVKALRVGIERNAENIMVLASYSKEKVKEMRIQSNTDFERFKADQISVFQETKKELK KEIQSTFDYRESVEKVIEHFKNNIEVPLKATFVRDSHTREGAGIKNKSLKIYKAGKETEI IGLENDNGSYWYQISDGSFTHFKNLKPIFEKNIEVVSTPKETAMNESNNSTQEAQTKEVD LKVKEQASKMVEEMKKEQNQKSEIELEMEKAQKILDNKGNGGNQ >gi|197282998|gb|ABQU01000052.1| GENE 13 10601 - 11053 413 150 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309803|ref|ZP_04808958.1| ## NR: gi|242309803|ref|ZP_04808958.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] # 1 150 1 150 150 295 100.0 8e-79 MKYKSKIAFYSLLLVGAMSFSGCLANKQVEIKPNHLDTELGNLIKGDERTYSDDDEAVIT ALLKNSPSYAQVKRQEAVEENIVKLPNNMPLYRQPLFAQMVVFPYTSKSGVYHGYSESWI KIKEGEFVLSDPKSENQRERIFDFNDVGKK >gi|197282998|gb|ABQU01000052.1| GENE 14 11053 - 13680 2103 875 aa, chain + ## HITS:1 COG:PSLT088_2 KEGG:ns NR:ns ## COG: PSLT088_2 COG3451 # Protein_GI_number: 17233453 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB4 components # Organism: Salmonella typhimurium LT2 # 322 866 12 560 593 125 23.0 5e-28 MSNIETKDKIDKNLKKLKEGTEKIKGITSNLKEDSAKVFKEKKEGMVKRALKPFEDLTSL PTATWNKIFKRYRFSDFLPYLSYDEKNEIYVNNDNTYGCVFRISPRIKMGDSTSEVIEEV LNKLPDDVFLQFMIIGSKNQKDFLELWRNEHLNRGIGSNDELLVNAINSMADFYYSKTKE SLSRSMITMSKNFVVLVSIKGADKKKILNLKRDAENIFKSNGFGGDVLSPKELKPYLYEI FNPNHDLNNIPYYDENCYLSRQVIAPSTSILVKDTHIEVDNKCWISLALQGLPKEFHISY FGEKIGDTISASLDTNQFTDTFIITASICALPKGKTTSTSRNHSVIATQNWSETIFREFA AVRRESVDIIERIDNQKQKLYAFDLNILLSGEDFEKAKENSQRIISYWSKGGDTGIVLDE ALGIHQLNFIASLPMGINEEYIFNMTGKYRSLFAEQISQFIPVEADYNGNYPNLVLYSRR GQIAGLDLFVSNINYNGYLVATSGAGKSVLLNMIAFNSYARGDRVFILDYDNSFLKLCET LGGQYLALDPNKPISFNPFSDIDTKEKLMEEMEYFSSLVYMLGSSKYEAKSLEEEKLIKP KIQEIIGVLYDDIGNELEITHIRDRLKTIKDQRFDDFASQLRPFCKEGIYGEFFTGKNQF NISREFIVAEFKAIDNSPDLRDPLIMLIIYHLNQLMYVSDKRANRMQIILDEAHRFLGKN PKMDDFIEQGYRRFRKYNASAILATQGFDDIYNMKTGGLSRAGSVIVNNSSWKIFMKQTE VSINMLLNSKLFNFSMGEERLLKSIVTKKGEYSELLLITPEEFKVPYRLIMDRFFYYVTT TDPKDKDKIKKLTDSGIALGEAIKQLVEEDKKNGL >gi|197282998|gb|ABQU01000052.1| GENE 15 13670 - 13939 301 89 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309805|ref|ZP_04808960.1| ## NR: gi|242309805|ref|ZP_04808960.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 89 1 89 89 145 100.0 1e-33 MDYKEVFNLVFKIYNANNKAEEALALKKLKELIESIEEQKLSEDISDKDCQLSLLLDGIL GMIDTGKKDFMLLSIDSYSQYSNQTISRP >gi|197282998|gb|ABQU01000052.1| GENE 16 13947 - 14507 458 186 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309806|ref|ZP_04808961.1| ## NR: gi|242309806|ref|ZP_04808961.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 186 1 186 186 330 100.0 3e-89 MVVKKVTKDEELKKELEIVLKIKPHSYIMETLIRGVCKMKGDIDYEEMLKIGSRIREARE FLGLTQEEFAKNFHIDTRLLSFYETGERRIPVTFIIKMYECLKVNPIFVLFGVGSSIIKE IDLKKFFVRLENPIVSSFIEYFTENTSTPTKTIFERYAQRDMALENKMAAKEARDIRRGK KQAIKG >gi|197282998|gb|ABQU01000052.1| GENE 17 14534 - 14743 208 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309807|ref|ZP_04808962.1| ## NR: gi|242309807|ref|ZP_04808962.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 69 1 69 69 117 100.0 2e-25 MAKHLVARELRRRGIHSEYFCKQHEINIYSFYATIAGKCLNKKAEIAFKKEGLLNILFKE HPNLKRSRK >gi|197282998|gb|ABQU01000052.1| GENE 18 14740 - 15447 624 235 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309808|ref|ZP_04808963.1| ## NR: gi|242309808|ref|ZP_04808963.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 235 1 235 235 363 100.0 5e-99 MKNASLEYIKNLSSVYDLSSIEVVDTLKDTLKRVYSCGEIESETINGNLVFYRVYYNRYN ELKKEVIKINSKDNNKIKEIFNAGLFRKSLKKTLQKIKSKQKYKKGIISGEIMGRTRNGY SVLTEFGNAFLPFSNALISEKRKKLFRPKRSLYFHIHKVYIERGKIKIILDRTSNLIIKQ EVRDILSIPKESLIGVSRKEGIEIVLHTKEKISKEEIKEISRRYKEKVKVEIRQW >gi|197282998|gb|ABQU01000052.1| GENE 19 15441 - 16259 755 272 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0840 NR:ns ## KEGG: JJD26997_0840 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 35 272 28 267 267 246 53.0 7e-64 MVENQRDTNQRGPVDSRNQGTDRWNGYAPKDLTEDFGQSEADRGRNIFNVLSEIQRYYVI EERSEEIPKEYFTIEQILEYFKIGFKSGLMESFIFVTLVPILQIIYPSFKFYFLDSNITD NEILFFKIISYTPIILTTLFVIYIGKYYQGYITRRAIFSLMNGRSVSFIVKGIIFYFLLQ WFIDYSLSHPKFLYGLSDWTSWIIGVFSDLSINIEAIYKYYYAYVIPAMDKASISILSTM MFFAILPYFTIFFISYFKRARKQKVKEEFEQF >gi|197282998|gb|ABQU01000052.1| GENE 20 16384 - 17226 763 280 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309810|ref|ZP_04808965.1| ## NR: gi|242309810|ref|ZP_04808965.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 280 1 280 280 451 100.0 1e-125 MKTSKKTKDTNMENSGESMDKNMEKNGNSMDKDMKNNGVIMDKNRNKNGKTMEEKGNNQA GEQTRKEQELEETMEEVVEYTKEVLQRVEEGEKELTLKNEKIFLMNLLPFLKTMKLDFYW RLLRIGNLSSRLGDVFGYKDEEYLLACYYSNISLLSVEHLLNKVELTEAEFNIYKRHIFL SADFLEKRNLKRASEIALNHHEKPNATGYQHKQSYPKESAFINIADEFIECILPNQHRPQ YTLKEALNETLKEYIHSTLFNKKEVEVIKAVLAEFYEENL >gi|197282998|gb|ABQU01000052.1| GENE 21 17226 - 18608 1275 460 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0837 NR:ns ## KEGG: JJD26997_0837 # Name: not_defined # Def: DNA transfer in the process of conjugation and F pilus assembly protein # Organism: C.jejuni_doylei # Pathway: not_defined # 6 456 4 451 455 533 60.0 1e-150 MGLFSKDEKKKKTLIGKGFKLEDKRQRELVDIYQDDDNRPNHTFVFGSTGVGKTRLLEGL MEQDIRKGQSVVIIDPKGDIGLFSKMVALAKECGREKDVMFVSSIFPDYSLKINPLSNYF MDEEVIANIVSGVPSQDEFFLKVAQETTTAIVKALILLRKINNNDEPITFEEIAKKAHYR GIESLKDEIDSAVEYNESESIASDLIRIQSLLEQIMSSNQDYFSKVTTTLRTTLSEMSVG NIGKIIGNVKSNKFIDRLEEDKPVLLFVMTGSMLTRQSSGILSKVIISMIQCCVGKIISS GKSFTHRLNLYIDEAASSVYRGIEVLFAQGRSSNLNITGLTQSLADMVAEIGKERADKIF DLTNTKIIMRINEQKSAELISEMGGKSVGYSYFLNLEGGISSREVEELNIEADDITQLQK REFYYFGFEGRFKGKTAPVSPSKYEIIFPDISSKEKRKVS >gi|197282998|gb|ABQU01000052.1| GENE 22 18609 - 20927 1608 772 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0836 NR:ns ## KEGG: JJD26997_0836 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 1 768 1 794 800 136 22.0 3e-30 MIGIIEDIIKFILTHRFIRIGINYIIASFLLFFVAIVAMIFYKKGVIYYNPLILFQKETY IWLWENYKLYIVAVVGIEQLILWFYFFYTKIKKTNPKMLAKKDEIIRVPLEEVMKLWLDE NELQEFYAKSKENSRQKTAIIKDSEVLEVWINSINELFIDEVKLFIYEVIRPNFSYFSEK ELQMVVFILTLLQDNRDCPSVTSNYHSDSNNQYKTEMLTIKMSAYEALAKYIPLLEHTLG VARNVIKVLDSKKVSPSKRQQLIPKTIISALAHDLGKIARYNSQVTTDSDYSRRRKELPH NEISSIIVEEIGFLEVKLEKEYIKEISQAVKLHHTAPSPENMLLSVLIEADWNARDNEKM TCRERIKKEMGQSLEKEMKRQISNGRTQEVKEVVSEEIQEEALPKRTQDKELELLKEPQN ETPNESLEETKEENLTIEQESFVTNETTINPTKETDEELSDFDSRSPSDDLGLNKNGYYV AMIATAALEKEKSLKLISNAKETMGTEALMYNHKGNILVFFKSESIPSTETMLNKIFLFQ PSKIGYLHLKGENNIYASLAKIENVLEDSEVGVVNCKQEKQLEPLRNTDKESIGESKVLE MENSFKNVMQSLAETKQKTDDNQESPFNAEKFLSAIFSKIKEKISEVSHASSGFYALPYK ARGRILVSGQFLNDIIAEVTQCSQKEAEKRKNFFVKQYGSKESNPRFIFDIAITKGFYTS VYYLVDRKGKKTEYICIPFDRKALDIDNAKMDYYMKKETIQGYKIEPFKNFT >gi|197282998|gb|ABQU01000052.1| GENE 23 21024 - 21239 256 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309813|ref|ZP_04808968.1| ## NR: gi|242309813|ref|ZP_04808968.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 71 30 100 100 104 100.0 2e-21 MMIDLTRKLDEAIKELKDKAGSIYEYADVAQNLKAIQQIILYNSEFLKELYKNLNKQYNE PTSIALIKENK >gi|197282998|gb|ABQU01000052.1| GENE 24 21236 - 21703 373 155 aa, chain + ## HITS:1 COG:RSp0841 KEGG:ns NR:ns ## COG: RSp0841 COG0741 # Protein_GI_number: 17549062 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Ralstonia solanacearum # 25 110 36 120 232 72 41.0 4e-13 MKFKTALMGLLFGFSSLYAKSYYVEAGEMFNVEPQLLWAIAKTESNFDIKALNKNKNGTY DIGIMQINSIHLPELKEKYNIEQEDLYNPRVNIHIGAMILKRCLNKHEGNLVNGVTCYNG RIKDNPYGKKVLEELSLALETYNAKENSSVAQRSN >gi|197282998|gb|ABQU01000052.1| GENE 25 21681 - 22190 528 169 aa, chain + ## HITS:1 COG:Cj0979c KEGG:ns NR:ns ## COG: Cj0979c COG1525 # Protein_GI_number: 15792306 # Func_class: L Replication, recombination and repair # Function: Micrococcal nuclease (thermonuclease) homologs # Organism: Campylobacter jejuni # 16 168 24 174 175 123 45.0 1e-28 MLHKEAIKRLEISSIIAIFAFIGYFFGDRITFLDKKMTAEVIKVYDGDTMTLQNGEDKLR VRFFGIDAPELKQEYGKESREHLLKMCPLGSKAELSIKETDKYNRLVAIINCNGYNLNKE QVAKGYAWAYTDYSFAYYTNQFNAKMKKLGLWEQDNPIEPKEWRRLQKK >gi|197282998|gb|ABQU01000052.1| GENE 26 22323 - 22742 373 139 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0964 NR:ns ## KEGG: JJD26997_0964 # Name: not_defined # Def: putative thioredoxin # Organism: C.jejuni_doylei # Pathway: not_defined # 3 139 6 142 142 134 49.0 1e-30 MKKILFSLFLLAGVAFGNPKVYGDIFEGQKEGLREAKLMLYIISSSKCPHCHNLLNDIGK TPHLLKLLEEDFIFIVTDLEDPRARIPNDLAFNGKTPTTYILTPTGNLIGTPIEGGIKAQ DLYTLLKGLEDYKKERLGF >gi|197282998|gb|ABQU01000052.1| GENE 27 22820 - 23525 466 235 aa, chain + ## HITS:1 COG:no KEGG:Bmur_1425 NR:ns ## KEGG: Bmur_1425 # Name: not_defined # Def: hypothetical protein # Organism: B.murdochii # Pathway: not_defined # 1 235 1 218 499 147 39.0 3e-34 MEFLDNLKDTMNTGYTENGSKAYLSTKDNLLDLFAKMGAWRYRINMDFNLKGQIIINDDD PFKILLKSYLTAPKETLCSLMYLRDIRGGLGERKLFRLFLIYLYLKRDDKQDLLDKTLNS LFDIGRYDDIVFILHQLHLAGIKKEKLYDKLKAQFFGELKGELPISLLGKWLPSENTSNK QTILMAKFTREQILQMDSRAYRKALSKLRAEIKIIENNLREKDYSFDYSKIPSLA Prediction of potential genes in microbial genomes Time: Tue May 24 02:31:08 2011 Seq name: gi|197282997|gb|ABQU01000053.1| Helicobacter pullorum MIT 98-5489 cont2.53, whole genome shotgun sequence Length of sequence - 4191 bp Number of predicted genes - 9, with homology - 7 Number of transcription units - 2, operones - 1 average op.length - 8.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 165 169 ## + Term 361 - 407 2.7 2 2 Op 1 . - CDS 706 - 924 267 ## gi|242309818|ref|ZP_04808973.1| predicted protein 3 2 Op 2 . - CDS 921 - 1025 164 ## 4 2 Op 3 . - CDS 1022 - 1183 231 ## gi|242309819|ref|ZP_04808974.1| predicted protein 5 2 Op 4 . - CDS 1214 - 1477 262 ## gi|242309820|ref|ZP_04808975.1| predicted protein 6 2 Op 5 . - CDS 1477 - 1665 255 ## gi|242309821|ref|ZP_04808976.1| predicted protein 7 2 Op 6 . - CDS 1669 - 1881 338 ## gi|242309822|ref|ZP_04808977.1| predicted protein 8 2 Op 7 . - CDS 1896 - 3062 829 ## JJD26997_0867 putative DNA primase 9 2 Op 8 . - CDS 3090 - 4091 405 ## Aave_0542 hypothetical protein - Prom 4116 - 4175 2.8 Predicted protein(s) >gi|197282997|gb|ABQU01000053.1| GENE 1 1 - 165 169 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no ATLDEKVILISGYSQNSIKALLKVLNDKMSTENISLQIVSEAIKPYEIYLEKEI >gi|197282997|gb|ABQU01000053.1| GENE 2 706 - 924 267 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309818|ref|ZP_04808973.1| ## NR: gi|242309818|ref|ZP_04808973.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 72 1 72 72 115 100.0 7e-25 MTDNKDWTGGRDMNYEKIYIGDTVRLNGIDYMVSYYKDSYAIILTSKNETSKNETRLFSF TEDYLYLKLKNR >gi|197282997|gb|ABQU01000053.1| GENE 3 921 - 1025 164 34 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTGQEIAMVVATLCLGVVLYKIYKLPKEKEKEQR >gi|197282997|gb|ABQU01000053.1| GENE 4 1022 - 1183 231 53 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309819|ref|ZP_04808974.1| ## NR: gi|242309819|ref|ZP_04808974.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 53 1 53 53 80 100.0 3e-14 MLIEVARTIGFGLFINSTYSLMNGNLSFNNLYIALISLAAIAGSYYYEKRSKK >gi|197282997|gb|ABQU01000053.1| GENE 5 1214 - 1477 262 87 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309820|ref|ZP_04808975.1| ## NR: gi|242309820|ref|ZP_04808975.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 87 1 87 87 160 100.0 2e-38 MNAAELKIKDLNGEFFATHSYDAEKVKECMRKYPLAYEEYGYSFDSSWEFLDFIDECRSP TSIFPDYYYDFTEVHIKGNFEGCFPAL >gi|197282997|gb|ABQU01000053.1| GENE 6 1477 - 1665 255 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309821|ref|ZP_04808976.1| ## NR: gi|242309821|ref|ZP_04808976.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 62 1 62 62 98 100.0 1e-19 MEIEKYEVILSNDSLAFQQRVNYYLKNGWQLVGSVSVTASKNYLGNEKTLYSQAVIKIKK EQ >gi|197282997|gb|ABQU01000053.1| GENE 7 1669 - 1881 338 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309822|ref|ZP_04808977.1| ## NR: gi|242309822|ref|ZP_04808977.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 70 1 70 70 114 100.0 1e-24 MKVTKQIAENCVAWFNESLCNYLNAYSYEDVDGVIRVYLSIDNYDVEISKDEIIDRSNQW LEETNIAVEE >gi|197282997|gb|ABQU01000053.1| GENE 8 1896 - 3062 829 388 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0867 NR:ns ## KEGG: JJD26997_0867 # Name: not_defined # Def: putative DNA primase # Organism: C.jejuni_doylei # Pathway: not_defined # 5 385 2 387 388 318 44.0 3e-85 MKMKKFNLEALKNIPILEVLSALGSKELKGKFTTCLNYAAHNNNDGKPSMYVYEKSNVCK CFACNLGGNTIEVAKFAFNGDFIKACEFLHAHWNIPFLDDSNFTSVNVPRFEAPKREITY MEFSKEKEYQSFKVNELIAGYGLESEEGKLKIVYSFIYRFSLMTEQSKKENYYKGRGINI PLDKIGFLSYGDIKSLEKSLLRYFPLEDLVRFKVFNKNRAGWNYSYDVAIVPFFDLYSDL ITGFSVRVLNPNNKGAKELNVFCGDIIYPMPFGLTYQTLKDKEWIWICEGHIDALSGIAS SKKDNVSFISFAGVYTYKDSLLGLLKSKNVVICFDKDTAGEKSGSELGEKLRKLGINTFI ANWESQYNDLNELVVANALSDIKLQKAA >gi|197282997|gb|ABQU01000053.1| GENE 9 3090 - 4091 405 333 aa, chain - ## HITS:1 COG:no KEGG:Aave_0542 NR:ns ## KEGG: Aave_0542 # Name: not_defined # Def: hypothetical protein # Organism: A.avenae # Pathway: not_defined # 6 149 11 162 369 77 36.0 6e-13 MSRLGNEIKMGFYPTDNNAVERILDSLSSKNVPSDFSVCDPCCGEGEALSRFKRFAGVTT YGVEIDEGRAKLAFEKLDNLICSDALFGVNKSRNAFSFLFLNPPYLDIKVAGKSVRSETE FVLRWAKTLMREGIMLLIINPTSAADPKLSRILKLSGMEFLHNFYFDNSDRKNYGQYFLM FKKADKVEMSDEDYYKAISPNSSVPFEQVDLSGITIPQKSKSRILFNSIGNPKEWQIEAM LQKSSLSKDFLKRMTLAKDDKVSSIMPPNEGQSSLLLGSGYFNEEIDGFLIKGAFSKVEM LTDKSEDGAKTQEQFVSNIYAFSTIEKKYYKLQ Prediction of potential genes in microbial genomes Time: Tue May 24 02:31:54 2011 Seq name: gi|197282996|gb|ABQU01000054.1| Helicobacter pullorum MIT 98-5489 cont2.54, whole genome shotgun sequence Length of sequence - 26690 bp Number of predicted genes - 53, with homology - 47 Number of transcription units - 18, operones - 12 average op.length - 3.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 476 125 ## gi|242310329|ref|ZP_04809484.1| predicted protein - Prom 509 - 568 3.9 2 1 Op 2 . - CDS 570 - 3008 1468 ## NGK_1048 Yea 3 1 Op 3 . - CDS 2971 - 3114 73 ## - Prom 3175 - 3234 4.5 - Term 3174 - 3204 -0.3 4 2 Op 1 . - CDS 3247 - 3312 96 ## 5 2 Op 2 . - CDS 3302 - 3433 207 ## 6 2 Op 3 . - CDS 3446 - 3958 417 ## COG1435 Thymidine kinase 7 2 Op 4 . - CDS 3969 - 4241 233 ## gi|242309827|ref|ZP_04808982.1| predicted protein 8 2 Op 5 . - CDS 4238 - 4669 503 ## JJD26997_0859 hypothetical protein - Prom 4753 - 4812 1.9 - Term 4700 - 4755 11.8 9 3 Op 1 . - CDS 4823 - 5173 459 ## gi|242309829|ref|ZP_04808984.1| predicted protein 10 3 Op 2 . - CDS 5190 - 5417 209 ## gi|242310342|ref|ZP_04809497.1| predicted protein 11 3 Op 3 . - CDS 5410 - 6057 564 ## JJD26997_0865 hypothetical protein 12 3 Op 4 . - CDS 6124 - 6564 464 ## gi|242309831|ref|ZP_04808986.1| predicted protein 13 3 Op 5 . - CDS 6567 - 6785 149 ## gi|242309832|ref|ZP_04808987.1| predicted protein 14 3 Op 6 . - CDS 6733 - 7029 226 ## JJD26997_0692 hypothetical protein - Prom 7058 - 7117 2.3 15 4 Op 1 . - CDS 7140 - 7448 288 ## gi|242309834|ref|ZP_04808989.1| conserved hypothetical protein 16 4 Op 2 . - CDS 7423 - 7665 220 ## gi|242309835|ref|ZP_04808990.1| predicted protein 17 4 Op 3 . - CDS 7718 - 8572 721 ## JJD26997_0851 putative prophage LambdaCh01, recombination protein Bet - Prom 8612 - 8671 2.6 18 5 Tu 1 . - CDS 8673 - 8810 72 ## gi|242309837|ref|ZP_04808992.1| predicted protein - Prom 8852 - 8911 3.3 19 6 Op 1 . - CDS 8927 - 9025 75 ## 20 6 Op 2 . - CDS 9003 - 9233 156 ## gi|242309838|ref|ZP_04808993.1| predicted protein 21 6 Op 3 . - CDS 9245 - 10210 814 ## GSU2154 hypothetical protein 22 6 Op 4 . - CDS 10207 - 10620 431 ## Shel_19140 hypothetical protein - Prom 10691 - 10750 6.2 23 7 Tu 1 . - CDS 10798 - 11127 325 ## gi|242309841|ref|ZP_04808996.1| predicted protein - Prom 11267 - 11326 8.2 24 8 Tu 1 . + CDS 11171 - 11308 58 ## - Term 11270 - 11305 3.7 25 9 Tu 1 . - CDS 11356 - 11745 458 ## COG0629 Single-stranded DNA-binding protein - Prom 11766 - 11825 5.4 - Term 11877 - 11912 -0.5 26 10 Tu 1 . - CDS 11974 - 12378 361 ## gi|242309843|ref|ZP_04808998.1| predicted protein - Prom 12400 - 12459 4.1 - Term 12412 - 12453 6.3 27 11 Op 1 . - CDS 12481 - 12597 124 ## 28 11 Op 2 . - CDS 12594 - 12797 188 ## gi|242309844|ref|ZP_04808999.1| predicted protein - Prom 12906 - 12965 4.3 - Term 12854 - 12895 0.1 29 12 Tu 1 . - CDS 13081 - 13518 532 ## JJD26997_0847 hypothetical protein - Prom 13556 - 13615 13.1 + Prom 14353 - 14412 8.9 30 13 Op 1 . + CDS 14586 - 15119 432 ## gi|242309846|ref|ZP_04809001.1| predicted protein + Prom 15206 - 15265 7.2 31 13 Op 2 . + CDS 15287 - 15517 321 ## gi|242309847|ref|ZP_04809002.1| predicted protein + Prom 16084 - 16143 5.1 32 14 Op 1 . + CDS 16195 - 16599 577 ## gi|242309848|ref|ZP_04809003.1| predicted protein 33 14 Op 2 . + CDS 16611 - 16844 188 ## gi|242309849|ref|ZP_04809004.1| predicted protein 34 14 Op 3 . + CDS 16844 - 17749 780 ## COG4422 Bacteriophage protein gp37 35 14 Op 4 . + CDS 17752 - 18327 514 ## gi|242309851|ref|ZP_04809006.1| predicted protein 36 14 Op 5 . + CDS 18338 - 18550 338 ## gi|242309852|ref|ZP_04809007.1| predicted protein 37 14 Op 6 . + CDS 18561 - 18869 419 ## gi|242309853|ref|ZP_04809008.1| predicted protein 38 14 Op 7 . + CDS 18872 - 19090 295 ## gi|242309854|ref|ZP_04809009.1| predicted protein + Prom 19093 - 19152 3.3 39 15 Op 1 . + CDS 19192 - 19335 143 ## gi|242309855|ref|ZP_04809010.1| predicted protein 40 15 Op 2 . + CDS 19347 - 19568 345 ## gi|242309856|ref|ZP_04809011.1| predicted protein 41 15 Op 3 . + CDS 19578 - 19820 294 ## gi|242309857|ref|ZP_04809012.1| predicted protein 42 15 Op 4 . + CDS 19813 - 20217 379 ## HPB8_12 hypothetical protein + Prom 20271 - 20330 5.5 43 16 Op 1 . + CDS 20467 - 20742 352 ## gi|242309859|ref|ZP_04809014.1| predicted protein 44 16 Op 2 . + CDS 20739 - 21044 233 ## gi|242309860|ref|ZP_04809015.1| predicted protein 45 16 Op 3 . + CDS 21044 - 21274 270 ## gi|242309861|ref|ZP_04809016.1| predicted protein + Prom 21283 - 21342 7.2 46 17 Op 1 . + CDS 21402 - 21863 254 ## gi|242309862|ref|ZP_04809017.1| predicted protein 47 17 Op 2 . + CDS 21880 - 22383 287 ## gi|242309863|ref|ZP_04809018.1| predicted protein 48 17 Op 3 . + CDS 22325 - 22552 344 ## gi|242309864|ref|ZP_04809019.1| predicted protein 49 17 Op 4 . + CDS 22577 - 22792 284 ## gi|242309865|ref|ZP_04809020.1| predicted protein + Term 22917 - 22965 -0.9 - TRNA 23006 - 23083 81.2 # Pro GGG 0 0 + Prom 23115 - 23174 8.0 50 18 Op 1 . + CDS 23214 - 24269 1401 ## COG1706 Flagellar basal-body P-ring protein 51 18 Op 2 . + CDS 24283 - 24612 507 ## WS1591 hypothetical protein 52 18 Op 3 . + CDS 24609 - 25619 1000 ## COG0642 Signal transduction histidine kinase 53 18 Op 4 . + CDS 25687 - 26689 997 ## COG0126 3-phosphoglycerate kinase Predicted protein(s) >gi|197282996|gb|ABQU01000054.1| GENE 1 2 - 476 125 158 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310329|ref|ZP_04809484.1| ## NR: gi|242310329|ref|ZP_04809484.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 156 1 157 195 131 47.0 1e-29 MNLKKAIIDGKMVFLVDMLVDNYRYYYLELFGKSQIIQSISAAIISNKADYVNIYDVGVD NEAFGRISGNSFCSSESKFKREVTPLENGYSHCILYSTLLQEQRTCYISKGGDEMDISYF RQWLNSLPIPIPKEEELTHYLFESLASNSRLFSYESLN >gi|197282996|gb|ABQU01000054.1| GENE 2 570 - 3008 1468 812 aa, chain - ## HITS:1 COG:no KEGG:NGK_1048 NR:ns ## KEGG: NGK_1048 # Name: not_defined # Def: Yea # Organism: N.gonorrhoeae_NCCP11945 # Pathway: not_defined # 296 703 403 827 827 237 35.0 1e-60 METMNFQEFLLNNAATIKEQLSNIVNPHFKGLENPKAYAKDLESLLGLKRNPFPTQATIV SAGVQHLRKNKSLLLSSEMGTGKTIMGISISHLLYKENGGNVFLMSPSHLVPKWAEEIEK TLGVGDNKVVDYEIIIVKNYLTMAYFKNIKKEKGKIRFFICSKEIAKLSYPRAEAQLTHN YVVVKTATNWQIKCASCGGVLKEYEEIPDSLVKSQPQSLELFVEIEGEKVLCDDQNFFDF ETKRGSLYHTFEPIEKCKKCRRIYTPKEAQHTFKTWFRGIKKEALKGVNTRVGVAEYIKR QLPKGFIDLLILDEIHELKGGDTAQGYAFGQLASCSKKVLGLTGTLLNGYASSLFYILYR MNPELMLSLGFSYSDVGLFIEKYGAFELSYKNSNEVEHEEGVVTRKGRKGQKTKELPKIH PLLIKDLLPMTLFLRLDEMNFELPNYDEEVISVPLDEAFGIDYLSYISDISSAIIENKSL LGVLASDSLSVPDLPFVSKDAMDRQGNCYASYLAPVDEDYITNKDKALVAELEKELELGR SCLVYVTFSNLGVADRIVKILETNFPDKRVRFLDSKIKADRRDIWIKENPCDILVCNPEL VKTGLDLLGFPTIIFYETGYNVSTLKQASRRAWRIGQKEACKVKFLTYANTPQQTALALM SRKIKALNSLDGRLVTTEKELASFAGECSIQEQIAQSILKGNDSSSDEVQTSGWTFKARE WNEFEAYYLEAQQNQSLKEVAPVVVAKEKTAPKKDYLETHFEETQSSLVNITFVENGKRK SAMMTQKDILEMLESDKENNSRKNYQLSLPLF >gi|197282996|gb|ABQU01000054.1| GENE 3 2971 - 3114 73 47 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLLKFVFSVLAKDILLFKLVSIQGTLLKNHIKRIKNGNYEFSRIFIK >gi|197282996|gb|ABQU01000054.1| GENE 4 3247 - 3312 96 21 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNPKIALSYLYGHLHKDKIRA >gi|197282996|gb|ABQU01000054.1| GENE 5 3302 - 3433 207 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTKKRDLNIVKNYQREISLQTKVVRDRTKYTRKQKHKKAFYES >gi|197282996|gb|ABQU01000054.1| GENE 6 3446 - 3958 417 170 aa, chain - ## HITS:1 COG:BS_tdk KEGG:ns NR:ns ## COG: BS_tdk COG1435 # Protein_GI_number: 16080759 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Bacillus subtilis # 2 153 10 162 195 61 28.0 9e-10 MINLIIGSMKSGKSARLLETAYKLKSSLSKKEQDKVIFIRPSCDTRNFITRKVIDFNHKE ILYGNEYTDLKDFDYIFIDEVQFFKKKYIQSLIANRKKKAGIFCAGLNADIKNKVWGNIA TLIPFVSSIELLKANCDICGAKESAIYNIGDGKIGDNYKVVCPRCKIELN >gi|197282996|gb|ABQU01000054.1| GENE 7 3969 - 4241 233 90 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309827|ref|ZP_04808982.1| ## NR: gi|242309827|ref|ZP_04808982.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 90 1 90 90 163 100.0 4e-39 MKQANNRFAELLLQNNINPSKMFFDKKRSCYVSVQDKVWWRYYKNTDILSLSRYVKEFIG GSYEDRIEERLYQVSVNQTSGEIISVSKIA >gi|197282996|gb|ABQU01000054.1| GENE 8 4238 - 4669 503 143 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0859 NR:ns ## KEGG: JJD26997_0859 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 15 143 12 141 141 116 54.0 3e-25 MAINLKELLVKTAEKTAKALASKEAKKTKQNEDFVRSHLTRQITAGLKSSEHFADRVIQR FTSDEFENLSSAISRAIRQTAPQESGCEHKTISQKIVDSLTGIVTILERQGKFGTVLVTT YKLGCENLLSDSELREMKLRGLL >gi|197282996|gb|ABQU01000054.1| GENE 9 4823 - 5173 459 116 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309829|ref|ZP_04808984.1| ## NR: gi|242309829|ref|ZP_04808984.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 116 1 116 116 216 100.0 3e-55 MKIKKMYSIYIICDNHLANSYRVGVFKNFTKAMAFVKKTFYGRGEYPSYSLEWNNITNLE SGDYEISSVDSFGQEITESYDVREVKVLEELFVVDEYGNIASIGDFQAPNYIQGDS >gi|197282996|gb|ABQU01000054.1| GENE 10 5190 - 5417 209 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242310342|ref|ZP_04809497.1| ## NR: gi|242310342|ref|ZP_04809497.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 73 1 73 73 102 63.0 6e-21 MLRIIPTKHFLERCSERKFELSLIPEIIKRVREKPTLRTFEVTNGAVTFIVQHNREEQVC LLVTGWVGNRHKKAM >gi|197282996|gb|ABQU01000054.1| GENE 11 5410 - 6057 564 215 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0865 NR:ns ## KEGG: JJD26997_0865 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 18 206 6 190 194 91 31.0 2e-17 MEKIIVNQNTKVITEIELQELLENLWDYAGRDLMVNGKEVRFYQDDIAECPLDWDCNPTF LSLLKGWKLGTKEVYDEDGECYTIPDDFDFPEDIEAFLEKNGYIFKRVYGYSHGGLSLAL EGHCPANFSCPFDSGLADFLIARKSDIREWYNTSRITPKLKEKVFLQWNAIINDTDSWVN GDVWFVEVDEEYYSCYGSSCLKKTLQDVLKEVKSA >gi|197282996|gb|ABQU01000054.1| GENE 12 6124 - 6564 464 146 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309831|ref|ZP_04808986.1| ## NR: gi|242309831|ref|ZP_04808986.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 146 1 146 146 286 100.0 3e-76 MATRSLIGFIEQGDIVASYCHYDGYLEWNGKILLEHYNDYASAKELVLGGAMRSIDFNKQ IDYFEPYEAPNTFPYAKNSKELEKNYLDKGSEPPYMDIEFIYYHDGQKWLYREVTPNFSD DSVTFGEEKILLNAVSLDKKTQGTLF >gi|197282996|gb|ABQU01000054.1| GENE 13 6567 - 6785 149 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309832|ref|ZP_04808987.1| ## NR: gi|242309832|ref|ZP_04808987.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 72 1 72 72 92 100.0 7e-18 MIAIMQEKAVMSALSGCKEQKMSVIDFLFFTTIFVALFTIAAFSLVSTLLIVRAAETAFS DFYSAIKNFIKE >gi|197282996|gb|ABQU01000054.1| GENE 14 6733 - 7029 226 98 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0692 NR:ns ## KEGG: JJD26997_0692 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 1 98 1 96 96 65 43.0 4e-10 MGYRAYCLKEYEVEYDTCLGFNYDFEGCLDFLKSYGLEIYFDDSSESWLKVKTEELLALD IDSLKASDEDKRRLQALQDIAYDSNYARKGGYVRVEWL >gi|197282996|gb|ABQU01000054.1| GENE 15 7140 - 7448 288 102 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309834|ref|ZP_04808989.1| ## NR: gi|242309834|ref|ZP_04808989.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] # 1 102 1 102 102 178 100.0 8e-44 MQTKVYPYNIKYKDGVLDDIKELPDEALSELAYYINQYKINPYSCSQPLFKNLKDCRKTY IANTSYRIVIRIEDNTIKIVEIVAIGKRENKEVYLTAASRLN >gi|197282996|gb|ABQU01000054.1| GENE 16 7423 - 7665 220 80 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309835|ref|ZP_04808990.1| ## NR: gi|242309835|ref|ZP_04808990.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 80 1 80 80 140 100.0 2e-32 MKTVSFTIPDDIYNVFKELQQQWNLKNVAEVIEVCALKALDEDKIDIKQTKNLKDRLFSK NGYTPQKEVEDFFANKGLSI >gi|197282996|gb|ABQU01000054.1| GENE 17 7718 - 8572 721 284 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0851 NR:ns ## KEGG: JJD26997_0851 # Name: not_defined # Def: putative prophage LambdaCh01, recombination protein Bet # Organism: C.jejuni_doylei # Pathway: not_defined # 1 270 1 278 292 221 46.0 2e-56 MNKEIINKENNQVALADAENLAFIKKQFFPVNATEKDIEFCLKVAQAYSLNPVLREIFFV ERMANVNGAWVVKVEPLVSRDGLLSIAHKSGKLSGIKSESFLKETPVLINGEWEIKKDLC AVANVYRTDTKEVFSAEVFYSEYAQKTKEGKITKFWAEKPHTMLKKVAESQALRKAFNIN GIYTPEELDGIKSVGGDVKTLSGVDLEVEADIDEPEIFYELDSTPAEADSEKKAVEALGL SVEEKNGYLKIMGNTYKKEAHIKALGYTLHKASSGENIWIKKLA >gi|197282996|gb|ABQU01000054.1| GENE 18 8673 - 8810 72 45 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309837|ref|ZP_04808992.1| ## NR: gi|242309837|ref|ZP_04808992.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 34 12 45 56 65 100.0 1e-09 MFAEMSKEAFLVFGLVCVIGLIFAVVGPEMWETYKHKRTKHKKKE >gi|197282996|gb|ABQU01000054.1| GENE 19 8927 - 9025 75 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKSQKDNKLELIKVFLQPLFVSLLSIIAYAYI >gi|197282996|gb|ABQU01000054.1| GENE 20 9003 - 9233 156 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309838|ref|ZP_04808993.1| ## NR: gi|242309838|ref|ZP_04808993.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 76 1 76 76 125 100.0 7e-28 MIYQIICIFMVAYFAAVIICGSITLLIMIKKGVSFDKSFFALLQIYVLSPVVFLEELVTS IKNKIGGNKDEKPKRQ >gi|197282996|gb|ABQU01000054.1| GENE 21 9245 - 10210 814 321 aa, chain - ## HITS:1 COG:no KEGG:GSU2154 NR:ns ## KEGG: GSU2154 # Name: not_defined # Def: hypothetical protein # Organism: G.sulfurreducens # Pathway: not_defined # 26 304 23 301 324 127 30.0 7e-28 MNIDIFNNLWQKNFAEAVVCESLESLGDRKLYIGSSDVGSCPRKVFLAKTQPASHSVEKN IVFQRGHLAEGIVRKGLIGLDFKEQFEVKDASGALRSHIDFLLESEDSISIIECKSIQSA EIEAPYDSWILQVQFQLFLLEKTLTNNTKPLKAFVFAVNVNTGYHKVFEVEKNPVLQDLA LQKARVLWKALKTGVEPEAEEQNYCSSCEFKANCPLLQRGVSNDIAPAEMLKLGEQVVLL QSEIKPMEIRLKALREKLLAEMQTSQIRKIQVGDNFVTATSGSSYQSLDTKAWKEAEPDL YQEVFEKYAKTTNKSASLLVK >gi|197282996|gb|ABQU01000054.1| GENE 22 10207 - 10620 431 137 aa, chain - ## HITS:1 COG:no KEGG:Shel_19140 NR:ns ## KEGG: Shel_19140 # Name: not_defined # Def: hypothetical protein # Organism: S.heliotrinireducens # Pathway: not_defined # 1 107 1 113 221 75 39.0 6e-13 MGNRCLIADKNRKTAIYQHWNGGRDTIEPLLRVAEYEFQKNPYKFGYDEFKAVLDVSKKV FDGKECDYERNQNIASDNGVYVVDGFQIVDREHNRFSEQKAHNALEMEIFITLSYHLGEE EAKRLMYKINKIEKDKK >gi|197282996|gb|ABQU01000054.1| GENE 23 10798 - 11127 325 109 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309841|ref|ZP_04808996.1| ## NR: gi|242309841|ref|ZP_04808996.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 109 1 109 109 167 100.0 3e-40 MENTINKPKEILSYPTMLLLVEMIKKFKQEDKKDEIIDVVMAVANDVKTKDNITAKAIKD EVEEKFKNELATKEFVRAEISDAKYDIVKWMIGSQIAVGGLIIAILKFF >gi|197282996|gb|ABQU01000054.1| GENE 24 11171 - 11308 58 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKAPFLKRRKSFQKKGGSLVLGREQERILTPLSNYKENTMPSIL >gi|197282996|gb|ABQU01000054.1| GENE 25 11356 - 11745 458 129 aa, chain - ## HITS:1 COG:HP1245 KEGG:ns NR:ns ## COG: HP1245 COG0629 # Protein_GI_number: 15645859 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Helicobacter pylori 26695 # 2 107 3 108 179 100 44.0 5e-22 MNKVILLGNLTKDVETKVFENGGKLANITLANNRSFKGKDGNVVEETTFVDVKIFGKSAE IAEKYLKKGSRILLEGSLVQENWTDSNGNRKSKLLVRCESFKMLDGKPVSNDGKSTPITE VEEGGEIPF >gi|197282996|gb|ABQU01000054.1| GENE 26 11974 - 12378 361 134 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309843|ref|ZP_04808998.1| ## NR: gi|242309843|ref|ZP_04808998.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 134 18 151 151 185 100.0 8e-46 METNLTIFKGNKPTINEIIEGEILEESNIALKGKKVTEKEKEKIKAQIEKAERIVRNVKL IYGFAIASLPASVVLFFILIFLDFKDIAFQCSLTLFGVSILVAALLPQILYGKDKIEFAN RYCEAKKRKSEDFI >gi|197282996|gb|ABQU01000054.1| GENE 27 12481 - 12597 124 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTPINIFGLFCIALGVGIYAYLCYKEKEIDKKVEKEAK >gi|197282996|gb|ABQU01000054.1| GENE 28 12594 - 12797 188 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309844|ref|ZP_04808999.1| ## NR: gi|242309844|ref|ZP_04808999.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 67 29 95 95 122 100.0 9e-27 MLESICNTLRNIGICIFSSGFFLIQFSNTTDGAWFSIVEGIVLIFVGSAGELKSQKLSDK INKKDKK >gi|197282996|gb|ABQU01000054.1| GENE 29 13081 - 13518 532 145 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0847 NR:ns ## KEGG: JJD26997_0847 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 8 137 22 151 151 68 34.0 6e-11 MATDTQNNTTNKQNNTQRPSRRQIIEHNQQRKISLIENNISAEVFIPESQAVSRTFRHFR MLDPIDASLRAFWGDKITSKDMEKWLKMQDEIHAKIVEAQEFGMNLLIENGRTRGIENFL LRQEVRRGIEKKEKEAKEESKAKAS >gi|197282996|gb|ABQU01000054.1| GENE 30 14586 - 15119 432 177 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309846|ref|ZP_04809001.1| ## NR: gi|242309846|ref|ZP_04809001.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 177 1 177 177 279 100.0 6e-74 MSKIATIIETNFGKSNLEFAYKNFSREEKRKYHSYINNRPAGKKSPFMWMVDRSFKEGAY SFREISNILDIDQEKVIEIYKSALKKIQRAILAKTESALFDEIQTSNMLPKSKKSKKCFL ETNLDKESDKLISVSYTDKRKRRRTKQMKQKDFLKALETERKNNTKKNYQPSLPLFW >gi|197282996|gb|ABQU01000054.1| GENE 31 15287 - 15517 321 76 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309847|ref|ZP_04809002.1| ## NR: gi|242309847|ref|ZP_04809002.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 76 59 134 134 133 100.0 3e-30 MNLIKEICKEYGLTHKELGEEIGYSGETIRNLASKPNESISVAVKKALFLFKENRELKKE IQKTENFKNLFKEFFG >gi|197282996|gb|ABQU01000054.1| GENE 32 16195 - 16599 577 134 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309848|ref|ZP_04809003.1| ## NR: gi|242309848|ref|ZP_04809003.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 134 1 134 134 270 100.0 3e-71 MENPIIRVWDNRQGKYLRENNIGVPPTLNLLSNKVTYPFRDSGESELEQETLEKELFTGI KDSAEVEIYEGDILSCDGFTYVVGFKDCQFVLYPLAKSGIGKNDYVPMYDYLMRGCFSYQ VIGNIHENKEYEQN >gi|197282996|gb|ABQU01000054.1| GENE 33 16611 - 16844 188 77 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309849|ref|ZP_04809004.1| ## NR: gi|242309849|ref|ZP_04809004.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 77 6 82 82 147 100.0 3e-34 MKFHKALKKAREIAYDTEYCATMYRKYQDTELGFEVDGVSFKSINVTDDKPIRKRSFSID DFLAKDWVVLNVYGEEC >gi|197282996|gb|ABQU01000054.1| GENE 34 16844 - 17749 780 301 aa, chain + ## HITS:1 COG:MT2803.2 KEGG:ns NR:ns ## COG: MT2803.2 COG4422 # Protein_GI_number: 15842273 # Func_class: S Function unknown # Function: Bacteriophage protein gp37 # Organism: Mycobacterium tuberculosis CDC1551 # 2 269 5 223 284 140 33.0 4e-33 MSKIEWTDKTWNVVTGCTQISPACQNCYAKAMTKRLQGMAIKEAWAKIKCEKCERGMLND DRNGVIEHFCECEPRMLKFEAPKYYYGWDKVIFHTDMLGHIFDKSKYPSGSKVFVNSMSD TFHHEVSYSHLKMLFNVMGARSDVTFQVLTKREMRMYAFLTEHSELLTPNIWIGVTAENQ EMVDKRIDWLVYTKKEIKRFANKDIKIFVSCEPLLEAIDLSKYINELDWVIVGGERAHKK GRVMQFEYVRNIYILCKKSNTPFFFKQWGDCEKAVKDSLVSDDLALTKEIENTKEFTNQK E >gi|197282996|gb|ABQU01000054.1| GENE 35 17752 - 18327 514 191 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309851|ref|ZP_04809006.1| ## NR: gi|242309851|ref|ZP_04809006.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 191 1 191 191 374 100.0 1e-102 MKNTGKLIIYIGDNYSTQEAIDKVREKMKVRGMDIKPELGKLLRYLHIPPYMTEDLISIR CPEAYKTPQEQIQWARELVKIVNMGYTIYLATMSDYIVRELSNCIMLNNLDSLEGLEHYG YENCHKLDSNKVEAYEVDCYNKNPTYIPYKVTSKQGIFATFFDEAIDKQNESQGEIFEKM NKQDKGFLDIY >gi|197282996|gb|ABQU01000054.1| GENE 36 18338 - 18550 338 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309852|ref|ZP_04809007.1| ## NR: gi|242309852|ref|ZP_04809007.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 70 1 70 70 110 100.0 3e-23 MKVDELIKELEKFKEEYGNLEVGISRINSAYEEIAYYSDIVIFKASKSKLFTDYDYETID YDTDTFCALG >gi|197282996|gb|ABQU01000054.1| GENE 37 18561 - 18869 419 102 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309853|ref|ZP_04809008.1| ## NR: gi|242309853|ref|ZP_04809008.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 102 1 102 102 150 100.0 3e-35 MKNENKEILKEVYEALDKLEELKATLRPIENTLNCMEYVLENVKEKKYDDICGLFEFEGE VVDKDYLLYDLNDKLEESIRGITEVYETLPLLTKSVKIRIKE >gi|197282996|gb|ABQU01000054.1| GENE 38 18872 - 19090 295 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309854|ref|ZP_04809009.1| ## NR: gi|242309854|ref|ZP_04809009.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 72 3 74 74 111 98.0 2e-23 MRISELVEKLNEIRAMKGDLLVSVFQRENNFDNDGEYYINVELDVVNNTNINLKNGQSEI IIVNEPYFLAIG >gi|197282996|gb|ABQU01000054.1| GENE 39 19192 - 19335 143 47 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309855|ref|ZP_04809010.1| ## NR: gi|242309855|ref|ZP_04809010.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 47 1 47 47 63 100.0 6e-09 MSEYSTFNEGSYYNDVNLEVVRNDNTNLKNSFEEVIIVNEAYFLGIY >gi|197282996|gb|ABQU01000054.1| GENE 40 19347 - 19568 345 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309856|ref|ZP_04809011.1| ## NR: gi|242309856|ref|ZP_04809011.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 73 1 73 73 124 100.0 1e-27 MKISELIKQLQEIKKKDGDIPVAFKRPITDQHKIRWLYDNVWISDSAYKIKDTDDDIYKV YGVDGESKVLFFF >gi|197282996|gb|ABQU01000054.1| GENE 41 19578 - 19820 294 80 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309857|ref|ZP_04809012.1| ## NR: gi|242309857|ref|ZP_04809012.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 80 1 80 80 131 100.0 2e-29 MRISEFIEKLQMNSKDYVFEMYLDKLEARVKEVRELYNNRDNLGSIDEVKRAFNNVHSGL SDALASVLESLDTLKESFNG >gi|197282996|gb|ABQU01000054.1| GENE 42 19813 - 20217 379 134 aa, chain + ## HITS:1 COG:no KEGG:HPB8_12 NR:ns ## KEGG: HPB8_12 # Name: not_defined # Def: hypothetical protein # Organism: H.pylori_B8 # Pathway: not_defined # 1 132 1 140 145 158 65.0 5e-38 MVNALELSSYILKNSVKGLSNLELQKILYFTELAYIKKFNKHLIIDDFEAWQYGPIIRSV YYEYRNYGANSIDKPEDESLSRQLTKEELEVIDSTIIECNSKSYWELVEKSNSFKGGKKE VINKDLIRKEAKGE >gi|197282996|gb|ABQU01000054.1| GENE 43 20467 - 20742 352 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309859|ref|ZP_04809014.1| ## NR: gi|242309859|ref|ZP_04809014.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 91 1 91 91 164 100.0 2e-39 MNNEVKEILEQRGESYGDFNAVSGDFWRMVEIIQKGDAWGNLDYNAKTALIMVTMKLARI INGGLQKDSLLDIQGYIELILKNSVDIKEAK >gi|197282996|gb|ABQU01000054.1| GENE 44 20739 - 21044 233 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309860|ref|ZP_04809015.1| ## NR: gi|242309860|ref|ZP_04809015.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 101 1 101 101 151 100.0 1e-35 MTDIYEMNKDIENSILCADSIIKRVEKLKNKLEWFKKIVDKEIKRNRVLEVRELLDNAIE HWAFDDEDTLDFFNEMKEELGNMAFSIEEYNTTLEDFKESR >gi|197282996|gb|ABQU01000054.1| GENE 45 21044 - 21274 270 76 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309861|ref|ZP_04809016.1| ## NR: gi|242309861|ref|ZP_04809016.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 76 2 77 77 117 100.0 2e-25 MSDKNSEELSNEGKHLCVMFDIGNIYTYAKDILVMINNRDENKDWSSTYEKLEIAKKALK EVFNELYAEKNNNKGS >gi|197282996|gb|ABQU01000054.1| GENE 46 21402 - 21863 254 153 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309862|ref|ZP_04809017.1| ## NR: gi|242309862|ref|ZP_04809017.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 153 1 153 153 251 100.0 8e-66 MKLKTNTKKAFWELVLLGSEVGIVLGATLFFFGIPSLMIDSNTELVMLMGEIFTYSIGIG IFLSALFLALKLKAEVSLSLREWGSSHYKPLVLLGQGLALVGIIVGFCLLLIEGVSTQMG LKSLSAVITLTLFFYFLIFLEWKARKRRDIHHQ >gi|197282996|gb|ABQU01000054.1| GENE 47 21880 - 22383 287 167 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309863|ref|ZP_04809018.1| ## NR: gi|242309863|ref|ZP_04809018.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 167 1 167 167 309 100.0 4e-83 MSIDISKKSISTIRRYKDYKYIIIRNSKNYYCGYILLDKEHYLSQYLAQFKGANYQRRHR HYDEMKKRVIEAGNTLKECSFIETLDVAKEEGFLIYSLLPKEEECFALVGFDNGSPCDKG TLSEMEEIMKLAIKKEINLIKNERRKRQNARLLHASQNPQRYCRVIL >gi|197282996|gb|ABQU01000054.1| GENE 48 22325 - 22552 344 75 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309864|ref|ZP_04809019.1| ## NR: gi|242309864|ref|ZP_04809019.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 75 1 75 75 121 100.0 1e-26 MLDYCTPAKTHKDIAELYYKNGFYYLNYKKKPYMLGDYSQGYDVQKANELLEKEFKALGM ASFVKALEILEQSKK >gi|197282996|gb|ABQU01000054.1| GENE 49 22577 - 22792 284 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309865|ref|ZP_04809020.1| ## NR: gi|242309865|ref|ZP_04809020.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 71 1 71 71 112 100.0 1e-23 MTEKELMECLPTKYKGRMMFRKKEAAEILGIHPLTISRWEKEGKISSVRHTKRSVFISLS SIAKLLSEERA >gi|197282996|gb|ABQU01000054.1| GENE 50 23214 - 24269 1401 351 aa, chain + ## HITS:1 COG:Cj1462 KEGG:ns NR:ns ## COG: Cj1462 COG1706 # Protein_GI_number: 15792779 # Func_class: N Cell motility # Function: Flagellar basal-body P-ring protein # Organism: Campylobacter jejuni # 5 351 3 348 348 332 53.0 5e-91 MKKVIYMVFVLLAMPLFAAKVSDLVNIVGVRDNQLIGYGLVVGLNGSGDKTTSTFTMQSI SNMLESVNVKIDPNDIQSKNVAAVMVTAKLPPFARQGDTIDILVSSIGDAKSLEGGTLLL TPLSGLDGRIYAVAQGAVGIGGKNERGGSANHALAATMPNGGIVEREVVYDLYSKVNATL SLKEANFQNAMRIQTRINETFGANPENKPVAMAIDPRTIKLQRPENLSMVEFLARVQNID VDYVKENKIIINERTGTVIAGMGVEVSPVVVTHNNITIKVSNEVVNDPEAVDMGSGAIFS PQQAMVTSPNNPTISSVTRALQRMGATPKDMIAIIETMKKAGAFNADLEII >gi|197282996|gb|ABQU01000054.1| GENE 51 24283 - 24612 507 109 aa, chain + ## HITS:1 COG:no KEGG:WS1591 NR:ns ## KEGG: WS1591 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 12 101 7 97 100 101 59.0 7e-21 MEINFSGLSGYSKEILEAAKQAPTIQKTDDDTRLREQTDAFEALIIKNMLDTALKMDDSL YPKAPGHDIYESMYRDTLSQTLSGSFGFSELLFDYLKDLQNQQGAKGVK >gi|197282996|gb|ABQU01000054.1| GENE 52 24609 - 25619 1000 336 aa, chain + ## HITS:1 COG:HP0244 KEGG:ns NR:ns ## COG: HP0244 COG0642 # Protein_GI_number: 15644872 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Helicobacter pylori 26695 # 4 332 48 377 381 315 55.0 9e-86 MIDQNLLESLSSSDKESFARGLKELITQTYEVEKEFVELKALFEEVLDILPTAVWVLEQE GEIFYQNSLASEIPEILEKLDLQNTNRQEIEVESKVYLVQTNQKLNKYIISATDITHEKR RERLASMGQISAHLAHEIRNPVGSVALLASTLLKRVDIKNKTLVLEIKKSIWRVERIVKA TLLFSKGVQIHNSEIIPQNIQNEIQESLNYYTYSKNINFIFRFDDEVFEADFDLLCIVLQ NFLFNAIDAIEESDEEEGIVEIEYHKNPKEVIFKIYDNGKPIENPQILFEPFKSTKLKGN GLGLALSLQIIEAHNGKIRLLEENKKGFEIRLPQNI >gi|197282996|gb|ABQU01000054.1| GENE 53 25687 - 26689 997 334 aa, chain + ## HITS:1 COG:jhp1264 KEGG:ns NR:ns ## COG: jhp1264 COG0126 # Protein_GI_number: 15612329 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Helicobacter pylori J99 # 1 334 1 334 402 414 63.0 1e-115 MSKNIQIMQNVKSVREIDIKDKRVLIRVDFNVPMDSELNISDDTRIREAIPTINYCIDNG AKSIILVSHLGRPKGRSEEFSLKAILKRLERLLAKDVVFVDSLDNAKITLNTLVDGSILL LENIRFYEGEEKNDSELSKQLADLCDVYVNDAFGTSHRKHASTYGVAQYAKEKVAGLLLK KEIDSFGIALSNPLRPLLLIVGGSKVSSKLTLLKSILEVVDKIIIGGAMSNTFLKAVGYD MKASLVEEDLLEEARSILRTAKEKGVKIYLPVDVVATDNIKEAKIIKISPAQDIPDDLMA VDIGPATVRLFNEVIRDCETIIWNGPMGVYENQK Prediction of potential genes in microbial genomes Time: Tue May 24 02:35:39 2011 Seq name: gi|197282995|gb|ABQU01000055.1| Helicobacter pullorum MIT 98-5489 cont2.55, whole genome shotgun sequence Length of sequence - 8709 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 2, operones - 2 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 + CDS 2 - 205 317 ## COG0126 3-phosphoglycerate kinase 2 1 Op 2 . + CDS 226 - 1182 868 ## COG0598 Mg2+ and Co2+ transporters + Term 1267 - 1307 -0.8 - Term 1164 - 1201 1.1 3 2 Op 1 . - CDS 1228 - 2196 927 ## COG0753 Catalase 4 2 Op 2 15/0.000 - CDS 2274 - 3392 1016 ## COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase 5 2 Op 3 . - CDS 3399 - 4181 720 ## COG0575 CDP-diglyceride synthetase 6 2 Op 4 . - CDS 4215 - 4745 311 ## COG1988 Predicted membrane-bound metal-dependent hydrolases 7 2 Op 5 . - CDS 4748 - 5200 471 ## COG0319 Predicted metal-dependent hydrolase 8 2 Op 6 . - CDS 5190 - 5948 748 ## COG0708 Exonuclease III - Prom 5978 - 6037 2.3 9 2 Op 7 . - CDS 6039 - 8549 3007 ## Kkor_0950 hypothetical protein - Prom 8619 - 8678 7.5 Predicted protein(s) >gi|197282995|gb|ABQU01000055.1| GENE 1 2 - 205 317 67 aa, chain + ## HITS:1 COG:HP1345 KEGG:ns NR:ns ## COG: HP1345 COG0126 # Protein_GI_number: 15645958 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Helicobacter pylori 26695 # 1 66 336 401 402 104 69.0 4e-23 SRGTFSISHTIADTYAYSVIGGGDTADAVDKAGDKDSMSFTSTGGGASLELLEGEVLPAF EVLDQKA >gi|197282995|gb|ABQU01000055.1| GENE 2 226 - 1182 868 318 aa, chain + ## HITS:1 COG:Cj0726c KEGG:ns NR:ns ## COG: Cj0726c COG0598 # Protein_GI_number: 15792075 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Campylobacter jejuni # 1 318 1 327 327 342 59.0 5e-94 MLNLFIKRNGMVVRESIQSVKSIDMEADILWIDLLHPNSEEIAYISKTYLLDIPTKEERE EIEESARYWEDSETVTINTYFLTRPNEEKIFHNETITFLLTHNILFTVRYSEFKVFDEIQ QRVLASPKNFEDGFDLISKIFELRVEKDADMLEGIAKETRLLRRMVVFDKQLGDEILEKL SILQEMHLSLRDSLFDKRLAITALLRTNKADNEVKKDLGIVLKDINSLVEFTNVNMNILD NIQTLFASQINIEQNKIIKIFTVVTVAMMPPTLIATIYGMNFTHMPELEWTYAYPIVLSA MIVSTILPLIYFKKKKWL >gi|197282995|gb|ABQU01000055.1| GENE 3 1228 - 2196 927 322 aa, chain - ## HITS:1 COG:jhp0437 KEGG:ns NR:ns ## COG: jhp0437 COG0753 # Protein_GI_number: 15611504 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Helicobacter pylori J99 # 11 322 4 314 314 337 54.0 1e-92 MLKNFKKVLTICASTCLLGTFVNAQETIYDPDKIAEIFYKLNGDPNDSKTRVNHKKGFCA NATFIADKNFNLSNLNIPLFNQAAIPVQVRYSLGGAIQDDRSKQRGMALKFMGNEDSWTM VMLNTEINFAKNPKEFGQFFEMKIPNLMDRKTIDDLNNNVDSYKNFSAYLDKIGISSLEH TPFYSIHTFWFKEKGKDKTIPARWKFIPKDGISYLSQSELKSASKDFLKEDFIAYTKNKP IEYQMYLEFPNKGDAVDDTTALWTGDHKTLLVGTLKVEKYDGEACNQDVYFPSELPSGVE APIDPLFDLRTPTYAITFGKRQ >gi|197282995|gb|ABQU01000055.1| GENE 4 2274 - 3392 1016 372 aa, chain - ## HITS:1 COG:HP0216 KEGG:ns NR:ns ## COG: HP0216 COG0743 # Protein_GI_number: 15644844 # Func_class: I Lipid transport and metabolism # Function: 1-deoxy-D-xylulose 5-phosphate reductoisomerase # Organism: Helicobacter pylori 26695 # 1 371 1 365 368 345 53.0 1e-94 MIILGSTGSIGINTLIIAKKLHLEIETLCAGKNIPLLNQQILEFKPKNIVIADKQDIPKI TKHFNGKIYYGENGILEAILDSKSTLVVNALVGFLGLKPTLYAINAGKTIALANKESLVV GGEFIDTSKIIPIDSEHFSLAYLLNCKIRPFKNLYITASGGAFRDTPLDEIPLQNSTNAL KHPNWKMGKKITIDSATMVNKLFEILEAYWLFKTKNIDAYIERNSHIHALVEFWDGSITA HFANANMQLPIAYAIVYGLSLKEEFLQSFSHSPLIPSINFANQHYTLEPICTKRYPLWNL KNSLLENPKLGVILNAANEVAVEAFLCHTIPFGEIVTTIQKTLDYFHQTLPNSLNEVFAL DFEVRKFAQNLL >gi|197282995|gb|ABQU01000055.1| GENE 5 3399 - 4181 720 260 aa, chain - ## HITS:1 COG:jhp0201 KEGG:ns NR:ns ## COG: jhp0201 COG0575 # Protein_GI_number: 15611271 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Helicobacter pylori J99 # 9 258 8 254 266 163 39.0 3e-40 MLNNLKSIETNRLYTAFFMLIAIILIVIFHSPSLLWSVLGIAYIIAFYESYKLYNQKNPS WIFLLLCMLIWISIFTLQSFNGLLFVLIVLASYQAYTNKGKLEQIMPFIYPTIPFIILYF IYLEYTINAIVWLLFIVALTDSFAYFGGKLLGGKLFSNSTFCKTSPNKTKEGVLIGVIFS VIISALIGLGVCDFLSSLIISLCASIASIFGDLYESYLKRQAGVKDSGKLFPGHGGMLDR LDGYFFGGIILYISLTLLPR >gi|197282995|gb|ABQU01000055.1| GENE 6 4215 - 4745 311 176 aa, chain - ## HITS:1 COG:ydjM KEGG:ns NR:ns ## COG: ydjM COG1988 # Protein_GI_number: 16129682 # Func_class: R General function prediction only # Function: Predicted membrane-bound metal-dependent hydrolases # Organism: Escherichia coli K12 # 1 131 5 133 200 79 36.0 2e-15 MLGKTHLAFGLGLTSCGIYLLETFHQPLLSPQNLALFYSAVGIGTLLPDIDEPQSIIGKK TMGISNFIKFIFGHRGFTHSLCFVLFLGILLFILHSLGILPIFLIMGLILGCLLHLVGDM MTPSGVPLLMPFNLKNYHILPKPLCFKTGGIFDYLIGLIGAFVFIYCSCDVLQDYF >gi|197282995|gb|ABQU01000055.1| GENE 7 4748 - 5200 471 150 aa, chain - ## HITS:1 COG:Cj0121 KEGG:ns NR:ns ## COG: Cj0121 COG0319 # Protein_GI_number: 15791509 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Campylobacter jejuni # 21 148 9 131 135 112 54.0 3e-25 MHNKIDFINQTDYKANQNFLEFLEKILEKILRDSNLCNKQCELLLVDNPTIQALNCSHRN KDMPTDVLSFPLESEFSLLLGSIVISLDFVKSASAKLNHSLEDEIALLFIHGALHLIGFD HEIDNGEHRTKEEEIITFFNLPKSLITRNS >gi|197282995|gb|ABQU01000055.1| GENE 8 5190 - 5948 748 252 aa, chain - ## HITS:1 COG:HP1526 KEGG:ns NR:ns ## COG: HP1526 COG0708 # Protein_GI_number: 15646134 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Helicobacter pylori 26695 # 1 249 1 249 250 379 70.0 1e-105 MKLISWNVNGLRACMNKGFMDFFNTIDADVFCIQESKMQKEQATFDFPNYEEYWNSAEKK GYSGVAIFSKKKPLSVAYDMGISHHDKEGRIITAEYNDFFLVNVYTPNSKRELERLEYRM EWEDDFRNFLKNLEVTKPVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEEREKMSVLLDS GFTDTFRYFHPTLEGAYSWWSYMGKARENNTGWRIDYFLCSKALDSKLKSASIYPEIFGS DHCPVGLEINAQ >gi|197282995|gb|ABQU01000055.1| GENE 9 6039 - 8549 3007 836 aa, chain - ## HITS:1 COG:no KEGG:Kkor_0950 NR:ns ## KEGG: Kkor_0950 # Name: not_defined # Def: hypothetical protein # Organism: K.koreensis # Pathway: not_defined # 602 836 767 998 1045 115 33.0 6e-24 MKFLKYLGIFLVLIIAIVVGIAMWLFSASGNEFLKNKITEIANQQAPIGLEFTHFKLNSN SYAFSITDKQKSQIAIGGEYSLFTLNTQAKINAIIKDLAPYEKLIGIKLNGGISLNGNVV KDSNILTAKADINAFNSDIYADITLQNFNPKRLFISSKEGINISSLLTFLNQPQYASGKL LLNADLDISNLSSPTGGFQIASSAILPNITLLKNDYGITLPTDPIKLAINGEAKQENILA TIAANSSYLNLDSQNLSISLKDYATNGDLKLMLSNISASGFELKSPVNANLNLKSSSIAN QEATLALNIITNPILAHLEIPNYTPTNATLNAKDLDLKELLNFASLPYEAKGTINLDAKV SKINLTNLSYTLNANLQSNIESLVFNNLNLASNNTLNANIKGDSQKLEVLAKSDLFDSNL SADATLENYSPQTITLDLQNLNLQKLAKLFNYDAKGFLSAKANLKDFKDSNFNGNFNLYS QDITIAKNTLNALSGMNFKKDITLSLNGDGRFNNGTGNAEVKINGQDINIEITNGKANLK DNAYSADFFINTPNIANINPLTMNLQGALTLKGKAGFENNLPSLYLQNQDFGNLVVDFKN ENFKLLGENIDVKKIANFTGNGKIIKGGIINANADLTIRGLDAPTIIKNLNGPFTLSGSN IEIYSIDIDGLAKNFEKSNQISLLDVGAFVLAGPLGIAATKGSNVGMLGLNTLVDTKTAI KQLEVRVDVKNGVAKASDVAFATQKTRIAAIGAINLNNNAFENFSIGILDEQNCAKFSQA IKGTLTNPKIEVTQTAISTAVNLATSLFGKLQKGAEKITNTKSKCEPFYNGIVKQP Prediction of potential genes in microbial genomes Time: Tue May 24 02:35:50 2011 Seq name: gi|197282994|gb|ABQU01000056.1| Helicobacter pullorum MIT 98-5489 cont2.56, whole genome shotgun sequence Length of sequence - 7361 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 6, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 38 - 247 301 ## gi|242309879|ref|ZP_04809034.1| predicted protein + Term 248 - 284 6.6 + Prom 264 - 323 4.4 2 2 Tu 1 . + CDS 357 - 1640 1320 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases + Term 1881 - 1919 -0.8 3 3 Tu 1 . - CDS 1641 - 1988 376 ## gi|242309882|ref|ZP_04809037.1| predicted protein - Prom 2015 - 2074 6.3 4 4 Tu 1 . + CDS 2055 - 3065 822 ## COG2089 Sialic acid synthase 5 5 Tu 1 . - CDS 3043 - 4224 871 ## COG3004 Na+/H+ antiporter - Prom 4306 - 4365 6.7 + Prom 4325 - 4384 9.5 6 6 Op 1 . + CDS 4417 - 4662 187 ## COG1696 Predicted membrane protein involved in D-alanine export + Prom 4678 - 4737 3.1 7 6 Op 2 . + CDS 4758 - 5915 758 ## COG1696 Predicted membrane protein involved in D-alanine export 8 6 Op 3 . + CDS 5936 - 7072 896 ## C8J_1094 hypothetical protein Predicted protein(s) >gi|197282994|gb|ABQU01000056.1| GENE 1 38 - 247 301 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309879|ref|ZP_04809034.1| ## NR: gi|242309879|ref|ZP_04809034.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 69 1 69 69 72 100.0 1e-11 MISGINSSSVAVSGNLSVLKKAMETEEVLMSSIINGMQNTQATMQTSQAPAQSTPVSQSQ PSSKLDIMA >gi|197282994|gb|ABQU01000056.1| GENE 2 357 - 1640 1320 427 aa, chain + ## HITS:1 COG:Cj0363c KEGG:ns NR:ns ## COG: Cj0363c COG0635 # Protein_GI_number: 15791730 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Campylobacter jejuni # 4 415 5 411 448 336 45.0 5e-92 MIQQNFSTKVVNSIMRYATNRYLSLKPSHLTKLPPPNPKKVKEKSYLLYIHVPFCMTLCT YCSFNRFLFQEDKAKAYFESLRKEMLMVKELGYDFNAIYVGGGTTSIMPEELCKTLDLAK SLFDIKEVSCESDPNHIHLEELEMFKGRIDRLSVGVQSFDDGILKKVGRYDKFGSGEEVI KKLQKAIGVLPILNVDLIFNFPNQTQEMLAKDLEIIKALKPEQVTLYPLMSSPSVKSILK RSIGEVSLQNEAQLYEQILETLKDDFSSLSSWAFSHKGSAIFDEYVVDNDEYVGIGSGSF SFLNGTLYVNTFSLKEYAHKINSGNMGVARERKYSKKAQLQYRLMVELFGGKASAKIFKE KYDSNLEWDLWKELMFLKITGNIYKKEGDYYPTTQGKYLFLSMMKEFYIGMDRVREESRA MLKEEDM >gi|197282994|gb|ABQU01000056.1| GENE 3 1641 - 1988 376 115 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309882|ref|ZP_04809037.1| ## NR: gi|242309882|ref|ZP_04809037.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 115 1 115 115 173 100.0 3e-42 MKKAIFMCSCVLFLCGCDELAQKGTQTFQNALEDSGLKDTLIEHGKKLDAFLDSNKTQEF IEKQNQILQESIDEFKSTLESNTTKELLQKQMENLNEMLGGESKSQDSNQTTFDL >gi|197282994|gb|ABQU01000056.1| GENE 4 2055 - 3065 822 336 aa, chain + ## HITS:1 COG:CAC2187 KEGG:ns NR:ns ## COG: CAC2187 COG2089 # Protein_GI_number: 15895456 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sialic acid synthase # Organism: Clostridium acetobutylicum # 2 335 14 346 350 359 53.0 3e-99 MQKNRIFLVAELSANHHQSKDIALKTIKAAKESGADAVKLQTYTPECLTLNCNSKYFQIQ GTLWEGKNFYQLYQEAMTPWEWHKDLFEYAKELGIICFSSPFSKEGVDFLEELGNPIYKV ASFEIVDLELIEYMAKTKKPIILSKGIATKEEIKEALDVCKKEVKDITLLQCTSSYPAPL NEANLSLIPKMQKDFGVKVGLSDHTLGITAPIVAASLGAKVIEKHFILDRKLGGPDSAFS IEPQEFSAMAKAVREVEELLGVESYELSQKSKEGRVFMRSLFVVEDIAKGERIKENQIRS IRPGYGIPPKMKYQVVGKKAKKALKRGEPLSFGDWE >gi|197282994|gb|ABQU01000056.1| GENE 5 3043 - 4224 871 393 aa, chain - ## HITS:1 COG:Cj1654c KEGG:ns NR:ns ## COG: Cj1654c COG3004 # Protein_GI_number: 15792959 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter # Organism: Campylobacter jejuni # 4 382 7 385 389 531 79.0 1e-151 MLLKLKNFIHTEAFGGILLIICTALALFVQNGPYAIHYRDFLNLNMGFNIGNFELSKPFL LWVNDGLISIFFFAIGLELKKEFVYGDFKNPKNITLPFVAALGGIIIPAAIFSLINFGDS YTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLLSLAIFDDVGAILIIALFYTNELS LAALIVSSIAIFMMLLLNLFNITRKSFYFICAVILWISVLKSGVHATLAGIISAFFIPMQ TKNGEPFLKEIDESLKFWLTFVILPLFAFANAGVNLSKITPELLFSGVSIGIFLGLFVGK QIGVFLFAYLAIKAKLASLPQGATFRQLYGVCILTGIGFTMSLFIDGLAYEVSDIFSYAD NLSILIASLCSGIFGFIFLRFFAKTKPIPNPQS >gi|197282994|gb|ABQU01000056.1| GENE 6 4417 - 4662 187 81 aa, chain + ## HITS:1 COG:HP0855 KEGG:ns NR:ns ## COG: HP0855 COG1696 # Protein_GI_number: 15645474 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Helicobacter pylori 26695 # 1 66 14 80 527 59 53.0 2e-09 MIFSSYIFIFAFLPVMLVGFYGLRYFNLHRGANVFLVLGSLFFYAFWNVLYLPILMGSIV VNYVIAKVILKSSGGGGANIT >gi|197282994|gb|ABQU01000056.1| GENE 7 4758 - 5915 758 385 aa, chain + ## HITS:1 COG:HP0855 KEGG:ns NR:ns ## COG: HP0855 COG1696 # Protein_GI_number: 15645474 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Helicobacter pylori 26695 # 9 385 132 527 527 333 48.0 3e-91 MDFEIPLPHIVLPLAISFFTFQQIAFLVDCYKKIDVADLQEESREIDFVDYCLFITFFPQ LIAGPIVHHKEMMPQFKANENQKLIDSVMIAKGMFIFSIGLFKKVYVADSFAKWANNGFS IVESGKILNFFESWATSLSYTFQLYFDFSGYCDMAIGLGLLFGIMLPINFNSPYKALNIA DFWRRWHITLGRFLRDYLYIPLGGNRLGKWLTLRNLFVVAFLSGIWHGSGFGFIIWGSLH GAAMVIHRVYSGFVEQWRFKESRIYKIFCWFLTFNFVNLSWIFFRSENLSGAINLLKGMF GIVWVELPEKATRIPRLLEGIGGRNDTAFFMVISFIIVLLCSNSIQKLETFRLDFKNMII AALCLYISLFTMAVTPYVEFIYFNF >gi|197282994|gb|ABQU01000056.1| GENE 8 5936 - 7072 896 378 aa, chain + ## HITS:1 COG:no KEGG:C8J_1094 NR:ns ## KEGG: C8J_1094 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_81116 # Pathway: not_defined # 16 375 4 367 371 285 45.0 1e-75 MRIQNGLNNFLQKKLSPKQFIFGVCLIPLPVVVVLFGNLWLYDPLQLFHKPIFRETTFFG DMRLAARGIIRYYDFDSVILGTSMLENTSAKEAGEKLGGKWVNLSLINSSYDERAVVLEY LFGYKKPQKIIYSLESFTIASIKDSSRFDYLYDGNPLDDFKVYLNDKFILCALAWRESKD CTGRDLEELLKWSNHEDLKILFGGFEKWLKYGKKETIAMLKNIKDTPFVVKKDNFDLEKQ RSYIQTYVLDFVAENPQTQFYFIVPTYSRLSYRIGSDNFDNKAFYNRALNLKWFVQELEK YPNAKIYGFDTLDYADDIANYRDFTHYNVDMNSLHLDSIRGEKHILDSNNIDSYLKAMED KIKNYDLKPFIEKAKTIQ Prediction of potential genes in microbial genomes Time: Tue May 24 02:37:27 2011 Seq name: gi|197282993|gb|ABQU01000057.1| Helicobacter pullorum MIT 98-5489 cont2.57, whole genome shotgun sequence Length of sequence - 26027 bp Number of predicted genes - 45, with homology - 45 Number of transcription units - 9, operones - 6 average op.length - 7.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 13 - 1077 910 ## COG1373 Predicted ATPase (AAA+ superfamily) - Prom 1155 - 1214 8.3 2 2 Op 1 40/0.000 + CDS 1259 - 1570 516 ## PROTEIN SUPPORTED gi|239523889|gb|EEQ63755.1| 30S ribosomal protein S10 3 2 Op 2 58/0.000 + CDS 1580 - 2158 1000 ## PROTEIN SUPPORTED gi|239523890|gb|EEQ63756.1| 50s ribosomal protein L3 4 2 Op 3 61/0.000 + CDS 2155 - 2769 1036 ## PROTEIN SUPPORTED gi|239523891|gb|EEQ63757.1| 50s ribosomal protein l4 5 2 Op 4 61/0.000 + CDS 2771 - 3052 457 ## PROTEIN SUPPORTED gi|239523892|gb|EEQ63758.1| 50S ribosomal protein L23 6 2 Op 5 60/0.000 + CDS 3063 - 3890 1435 ## PROTEIN SUPPORTED gi|239523893|gb|EEQ63759.1| 50S ribosomal protein L2 7 2 Op 6 59/0.000 + CDS 3900 - 4181 492 ## PROTEIN SUPPORTED gi|239523894|gb|EEQ63760.1| 30S ribosomal protein S19 8 2 Op 7 61/0.000 + CDS 4192 - 4521 532 ## PROTEIN SUPPORTED gi|224417890|ref|ZP_03655896.1| 50S ribosomal protein L22 9 2 Op 8 50/0.000 + CDS 4521 - 5228 1188 ## PROTEIN SUPPORTED gi|239523896|gb|EEQ63762.1| 30S ribosomal protein S3 10 2 Op 9 . + CDS 5231 - 5656 718 ## PROTEIN SUPPORTED gi|239523897|gb|EEQ63763.1| 50S ribosomal protein L16 11 2 Op 10 . + CDS 5643 - 5837 278 ## PROTEIN SUPPORTED gi|224417893|ref|ZP_03655899.1| 50S ribosomal protein L29 12 2 Op 11 50/0.000 + CDS 5837 - 6103 440 ## PROTEIN SUPPORTED gi|239523899|gb|EEQ63765.1| 30S ribosomal protein S17 13 2 Op 12 57/0.000 + CDS 6100 - 6468 601 ## PROTEIN SUPPORTED gi|239523900|gb|EEQ63766.1| 50S ribosomal protein L14 14 2 Op 13 48/0.000 + CDS 6468 - 6698 385 ## PROTEIN SUPPORTED gi|239523901|gb|EEQ63767.1| 50S ribosomal protein L24 15 2 Op 14 50/0.000 + CDS 6702 - 7256 926 ## PROTEIN SUPPORTED gi|239523902|gb|EEQ63768.1| 50S ribosomal protein L5 16 2 Op 15 50/0.000 + CDS 7219 - 7434 377 ## PROTEIN SUPPORTED gi|239523903|gb|EEQ63769.1| 30S ribosomal protein S14 17 2 Op 16 55/0.000 + CDS 7444 - 7839 657 ## PROTEIN SUPPORTED gi|239523904|gb|EEQ63770.1| 30S ribosomal protein S8 18 2 Op 17 46/0.000 + CDS 7850 - 8386 900 ## PROTEIN SUPPORTED gi|239523905|gb|EEQ63771.1| 50S ribosomal protein L6 19 2 Op 18 56/0.000 + CDS 8397 - 8753 582 ## PROTEIN SUPPORTED gi|239523906|gb|EEQ63772.1| 50S ribosomal protein L18 20 2 Op 19 10/0.000 + CDS 8762 - 9202 721 ## PROTEIN SUPPORTED gi|239523907|gb|EEQ63773.1| 30S ribosomal protein S5 21 2 Op 20 53/0.000 + CDS 9212 - 9613 661 ## PROTEIN SUPPORTED gi|239523908|gb|EEQ63774.1| 50S ribosomal protein L15 22 2 Op 21 2/0.333 + CDS 9613 - 10872 904 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 + Prom 10914 - 10973 3.3 23 3 Op 1 9/0.000 + CDS 11001 - 11630 758 ## COG0024 Methionine aminopeptidase 24 3 Op 2 . + CDS 11635 - 11853 241 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 + Prom 11975 - 12034 4.8 25 4 Op 1 . + CDS 12088 - 12201 199 ## PROTEIN SUPPORTED gi|224417907|ref|ZP_03655913.1| 50S ribosomal protein L36 26 4 Op 2 48/0.000 + CDS 12212 - 12580 613 ## PROTEIN SUPPORTED gi|224417908|ref|ZP_03655914.1| 30S ribosomal protein S13 27 4 Op 3 36/0.000 + CDS 12591 - 12983 670 ## PROTEIN SUPPORTED gi|224417909|ref|ZP_03655915.1| 30S ribosomal protein S11 28 4 Op 4 26/0.000 + CDS 12993 - 13619 1057 ## PROTEIN SUPPORTED gi|239523915|gb|EEQ63781.1| 30S ribosomal protein S4 29 4 Op 5 50/0.000 + CDS 13638 - 14627 1177 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 30 4 Op 6 . + CDS 14645 - 14995 579 ## PROTEIN SUPPORTED gi|239523917|gb|EEQ63783.1| 50S ribosomal protein L17 + Term 14997 - 15034 5.7 + Prom 15014 - 15073 10.5 31 5 Op 1 28/0.000 + CDS 15188 - 15691 759 ## COG0723 Rieske Fe-S protein 32 5 Op 2 16/0.000 + CDS 15701 - 16930 1127 ## COG1290 Cytochrome b subunit of the bc complex 33 5 Op 3 . + CDS 16942 - 17784 924 ## COG2857 Cytochrome c1 + Term 17795 - 17830 4.4 34 6 Tu 1 . - CDS 17797 - 20109 1425 ## COG0068 Hydrogenase maturation factor - Prom 20166 - 20225 6.8 + Prom 20115 - 20174 7.6 35 7 Op 1 . + CDS 20201 - 20836 667 ## COG0352 Thiamine monophosphate synthase 36 7 Op 2 . + CDS 20861 - 21157 282 ## COG2350 Uncharacterized protein conserved in bacteria 37 8 Tu 1 . - CDS 21149 - 21439 287 ## gi|242309353|ref|ZP_04808508.1| predicted protein - Prom 21512 - 21571 5.7 + Prom 21411 - 21470 6.8 38 9 Op 1 28/0.000 + CDS 21554 - 22030 531 ## COG1826 Sec-independent protein secretion pathway components 39 9 Op 2 3/0.000 + CDS 22023 - 22760 656 ## COG0805 Sec-independent protein secretion pathway component TatC 40 9 Op 3 2/0.333 + CDS 22753 - 23796 1118 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) 41 9 Op 4 . + CDS 23793 - 24278 192 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 42 9 Op 5 . + CDS 24354 - 24578 241 ## NIS_0357 hypothetical protein 43 9 Op 6 . + CDS 24588 - 24956 416 ## Suden_0381 hypothetical protein 44 9 Op 7 . + CDS 24944 - 25594 443 ## WS1181 hypothetical protein 45 9 Op 8 . + CDS 25591 - 26026 373 ## WS1180 hypothetical protein Predicted protein(s) >gi|197282993|gb|ABQU01000057.1| GENE 1 13 - 1077 910 354 aa, chain - ## HITS:1 COG:HP1321 KEGG:ns NR:ns ## COG: HP1321 COG1373 # Protein_GI_number: 15645934 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Helicobacter pylori 26695 # 31 349 50 370 377 96 31.0 7e-20 MVLEKILESYPKNIAKIHRKVEIKLKDLNLIYGAKNIGKTNFVLQYYQQAEFKNLKKMYI NLKDSKINPNKDFDDLESFCQKEKVEILIVDSYIPSFKLPNLPKITLISDIPHQITNYSI FELPPITFYEYQQIHKPNIQDSFNNYLKYGNLFEAESLNDYKKGEFLKFLANDNIYFWIL KNLAQNLGLKVSLHQIYTKLKKEGKISKDRFYEYAKFLQDSKILFWLEKFEHNLSPKKLY FYDFTLKNAVSYDKNFSSLFENMVFLELLYHFKQDIFFTDKLDFYLPQVSLGILCLPFIQ QHSLEQKLHKIIKEREYCEKFLIITLNQKGQGENLGTPYTLSPFYDFALQNSLS >gi|197282993|gb|ABQU01000057.1| GENE 2 1259 - 1570 516 103 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523889|gb|EEQ63755.1| 30S ribosomal protein S10 [Helicobacter pullorum MIT 98-5489] # 1 103 1 103 103 203 100 1e-51 MEKIRLKLKAYDHRVLDRSVVSIVEAVKRTGAEIRGPIPLPTKKRRYTVLKSPHINKDSR EQFEIRVHCRVIDIVSATPETVDSLTKLDMAPEVDVEVRSMGK >gi|197282993|gb|ABQU01000057.1| GENE 3 1580 - 2158 1000 192 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523890|gb|EEQ63756.1| 50s ribosomal protein L3 [Helicobacter pullorum MIT 98-5489] # 1 192 1 192 192 389 100 1e-108 MEFLVEKIGMSRTVAKPSIPVTLLKVKNAKVCEVLEGGKALVAYHQGKSINKSIAGQQKK YNLDKEYNKFATLEVNNTEAGDLDLSVLENAKRAKVSFNTKGRGFSGVMKRWNFQGGPGA HGSRFHRAPGSIGNREWPGRVQPGKKMAGHYGNEKVTVQNEIISFDKEHGVLVLKGSVPG FNGAFGKLKVVK >gi|197282993|gb|ABQU01000057.1| GENE 4 2155 - 2769 1036 204 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523891|gb|EEQ63757.1| 50s ribosomal protein l4 [Helicobacter pullorum MIT 98-5489] # 1 204 1 204 204 403 100 1e-112 MSKAIILDKELKKSGEAQLPESYKSINSHNLYLYIKSFLASMRANNAMAKTRGRVSGGGK KPWSQKGGGRARAGSITSPVFVGGGVSHGPSNNRNYNLKVNKKQKKLALQYALQEKADNG SLFIVDKIQIPSGKTKDAYTMFKTLNQRNILFVSEMFDEKTYFAFRNLKECYLIDGAELN AYLAATFRAVVIEKALFEAITKEG >gi|197282993|gb|ABQU01000057.1| GENE 5 2771 - 3052 457 93 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523892|gb|EEQ63758.1| 50S ribosomal protein L23 [Helicobacter pullorum MIT 98-5489] # 1 93 1 93 93 180 100 7e-45 MASITDIKTIMYTEKSLKLQEQNVLVVQTSPKLSKTQLKEVFKEYFGVTPLSINSLRQEG KVKRFRGVIGKRNDFKKFFVKLPEGAKIESLAV >gi|197282993|gb|ABQU01000057.1| GENE 6 3063 - 3890 1435 275 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523893|gb|EEQ63759.1| 50S ribosomal protein L2 [Helicobacter pullorum MIT 98-5489] # 1 275 1 275 275 557 100 1e-158 MAIKTYKPYTPSRRFMSNLSSENITAKASVRKLLVKLPVHAGRNNNGRITSRHKEGGAKK LYRIIDFKRNKFNIEGKVSTIEYDPYRNCRIALVTYKDGDKRYIIQPSGLKVGDIVLSAE GGLDIRLGYAMKLKNIPIGTVVHNIEMYPGRGGQLARSAGASAQLMGREGKYSIIRMPSG EMRYILGECMATIGTVGNEDFANINIGKAGRNRHLGIRPQTRGSAMNPVDHPHGGGEGKT GSSGHPVSPWGMPAKGYKTRRKKASDKLIISRRKK >gi|197282993|gb|ABQU01000057.1| GENE 7 3900 - 4181 492 93 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523894|gb|EEQ63760.1| 30S ribosomal protein S19 [Helicobacter pullorum MIT 98-5489] # 1 93 1 93 93 194 100 6e-49 MARSIKKGPFVDEHLMKKVIKAKETKDNKPIKTWSRRSTIIPEMIGFTFNVHNGRAFVPV YVTENHVGYKLGEFAPTRTFKGHKGSVQKKIGK >gi|197282993|gb|ABQU01000057.1| GENE 8 4192 - 4521 532 109 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417890|ref|ZP_03655896.1| 50S ribosomal protein L22 [Helicobacter canadensis MIT 98-5491] # 1 109 1 109 109 209 100 1e-53 MSKALLRYIRLSPTKARLIAREVQGMNAELAIASLEFMPNKAAKIISKVIASAVANGGYE AENVVVSSCRVDAGPVLRRFTPRARGRATPVRKPTSHIFVEVAQKSKDK >gi|197282993|gb|ABQU01000057.1| GENE 9 4521 - 5228 1188 235 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523896|gb|EEQ63762.1| 30S ribosomal protein S3 [Helicobacter pullorum MIT 98-5489] # 1 235 1 235 235 462 100 1e-129 MGQKVNPIGLRLGINRNWESRWFPAFTTAPQNIAEDYKIRKFLKKELYYAGVSDILIERT ARKVRVTVVAARPGIIIGKKGADVEKLKESLKKIVNKDIFLNIKEVKKPQSNAQLSAESV ATQLERRVAFRRAMKKVMQGAMKSGAKGIKVKVSGRLAGAEMARTEWYMEGRIPLHTLRA KIDYGFAEALTTYGNIGVKVWIFKGEVLQKGIQAEKQQEEGEAKTNRPTRKRRGQ >gi|197282993|gb|ABQU01000057.1| GENE 10 5231 - 5656 718 141 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523897|gb|EEQ63763.1| 50S ribosomal protein L16 [Helicobacter pullorum MIT 98-5489] # 1 141 1 141 141 281 100 4e-75 MLMPKKTKYRKQMKGRNRGKAFRGTSLAFGEFGIKAIEHGRIDSRQIEAARIAMTRATKR TGMVWIRVFPDKPLTAKPLETRMGKGKGAVEKWVMNIKPGRIIYEMGSVDEALARSALAL AQSKLPFKTKIVTREGENEIY >gi|197282993|gb|ABQU01000057.1| GENE 11 5643 - 5837 278 64 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417893|ref|ZP_03655899.1| 50S ribosomal protein L29 [Helicobacter canadensis MIT 98-5491] # 1 64 1 64 64 111 87 4e-24 MKYTEINEKNTQELKELLKEKETALFELNLKLRTMQQTNTSEIRATRKDIARIKTALNAK GRAE >gi|197282993|gb|ABQU01000057.1| GENE 12 5837 - 6103 440 88 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523899|gb|EEQ63765.1| 30S ribosomal protein S17 [Helicobacter pullorum MIT 98-5489] # 1 88 1 88 88 174 100 7e-43 MSSVQPHKRIISGKVVTKAGDKSVTILVERRVIHPKYRKIVKRFKKYIIHDENNSVKVGD VIEAIECKPISKRKAFTLHKVVSVGVEL >gi|197282993|gb|ABQU01000057.1| GENE 13 6100 - 6468 601 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523900|gb|EEQ63766.1| 50S ribosomal protein L14 [Helicobacter pullorum MIT 98-5489] # 1 122 1 122 122 236 100 1e-61 MIQSFTRLNVADNSGAKEIMCIKVLGGSKRRYATVGDVIVASVKKALPSGKVKKGQVVKA VVVRTKKEIHREDGALIRFDDNAAVILDSKKEPIGTRIFGPVGREIRYANFMKIVSLAPE VL >gi|197282993|gb|ABQU01000057.1| GENE 14 6468 - 6698 385 76 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523901|gb|EEQ63767.1| 50S ribosomal protein L24 [Helicobacter pullorum MIT 98-5489] # 1 76 1 76 76 152 100 2e-36 MTKFKIKKGDMVEVITGDDKGKKAKVLQVLPKKSQVIVEGCKMAKKAVKPSEKNPKGGFI SKEMPIHISNVKKAED >gi|197282993|gb|ABQU01000057.1| GENE 15 6702 - 7256 926 184 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523902|gb|EEQ63768.1| 50S ribosomal protein L5 [Helicobacter pullorum MIT 98-5489] # 1 184 1 184 184 361 100 3e-99 MYQLKAAYKNEIRAKLAEELGIKNPMLLPKLEKIVISVGAGMHAKDTKIMQNIADTISLI AGQKSVITSAKKSVAGFKMREGMPMGVKVTLRGNQMYNFLEKLIVIALPRVKDFRGIPRN GFDGRGNYSFGVNEQLIFPEVVYDDIMVSHGMNITFVTSAKTDKEALKLLELFGLPFAKG RTNG >gi|197282993|gb|ABQU01000057.1| GENE 16 7219 - 7434 377 71 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523903|gb|EEQ63769.1| 30S ribosomal protein S14 [Helicobacter pullorum MIT 98-5489] # 1 71 1 71 71 149 98 1e-35 MAYLLQKEEQMAKKSMIAKANRKPKFKVRAYTRCSICGRPHSVYRDFGICRVCLRKMGNE GLIPGLRKASW >gi|197282993|gb|ABQU01000057.1| GENE 17 7444 - 7839 657 131 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523904|gb|EEQ63770.1| 30S ribosomal protein S8 [Helicobacter pullorum MIT 98-5489] # 1 131 1 131 131 257 100 5e-68 MVNDIIADSLTRIRNASMRRLDTTTLYYAKIVVSILEVFQAKGFIEGYKVIEKDKKQFIN VVLKYDEKGRSVINEIARISKPGRRVYKARNELKRFKNGYGTIVVSTSKGVIANDDAYKA NVGGEALCSIW >gi|197282993|gb|ABQU01000057.1| GENE 18 7850 - 8386 900 178 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523905|gb|EEQ63771.1| 50S ribosomal protein L6 [Helicobacter pullorum MIT 98-5489] # 1 178 1 178 178 351 100 3e-96 MSRVGKKPISIPSSVQVSIEGSKIVFKGGKITKELETYGRVGIDFKDNELSFSLSGDNAQ ARAYWGTYRALANNIVVGLTEGFTKQLEINGVGYKAAVKGKVLELALGFSHPINYDIPEG IEIAVDKNLVIIKGADKQQVGQIAAEIREFRPPEPYKGKGVKYVDERIIRKAGKTSKK >gi|197282993|gb|ABQU01000057.1| GENE 19 8397 - 8753 582 118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523906|gb|EEQ63772.1| 50S ribosomal protein L18 [Helicobacter pullorum MIT 98-5489] # 1 118 1 118 118 228 100 2e-59 MTDKIIRRKRSLRIKRKLRIRARVFGDATTPRLSIFRSNRYFYAQVIDDVKGITLASVDG KKMGLKNNKEDVKKIASTLAQSLKKINVEKVIFDRNGYLYHGVVASFADSLRENGISL >gi|197282993|gb|ABQU01000057.1| GENE 20 8762 - 9202 721 146 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523907|gb|EEQ63773.1| 30S ribosomal protein S5 [Helicobacter pullorum MIT 98-5489] # 1 146 1 146 146 282 100 2e-75 MEINREDFKEVVVNIGRVTKVVKGGRRFRFNALVVIGNKEGLVGFGLGKAKEVPDAVKKA IDDAFKNIVKVNIKGTTIAHDVQQKYNSSIILLKPASEGTGVIAGGSVRPVLEMAGIKDI LTKSLGSNNPYNVVRATIDALSKVKA >gi|197282993|gb|ABQU01000057.1| GENE 21 9212 - 9613 661 133 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523908|gb|EEQ63774.1| 50S ribosomal protein L15 [Helicobacter pullorum MIT 98-5489] # 1 133 1 133 133 259 100 2e-68 MALENLVPAKGSVKKIKRVGRGQGSGMGKTSTRGGKGQTARTGSKQKRGFEGGQQPLQRR LPKVGFTSRVVKPYVINVELIKAVSALEEITFESIRSVHKFPAYTTKIKLIGGSAKNLVA KIKDERITTSGTK >gi|197282993|gb|ABQU01000057.1| GENE 22 9613 - 10872 904 419 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 8 414 26 436 447 352 43 1e-96 MNKAIVNKILITLGFLLAYRVLAYIPVPGVDTAVIKTFFDNNASNALGLFNMFSGNAVER LSIISLGIMPYITASIIMELLAATFPNLAKMKKERDGMQKYMQIIRYSTVVITLIQAVGV SIGLKSLGTGANGAIMIDMNIFIAISAFSMLCGTMLLMWIGEQITQRGVGNGISLIIFAG IVSGIPSAIAGTFNLVNTNQISWLVLLFIAAIIIITVACIIFVELGERRIPISYSRKVVM QNQDKRIMNYIPIKMNLSGVIPPIFASAILMFPSTILQASSNSVIMQIADYLNPNGYLYN VLMFLFVIFFAYFYASIVFNAKDISENLKRQGGFIPGIRPGEGTANFLTEVANKLTLWGS LYLALIATLPWVLVKASGVPFYFGGTAVLIVVQVAVDTMRKIEAQIYMNKYKTLSAVGL >gi|197282993|gb|ABQU01000057.1| GENE 23 11001 - 11630 758 209 aa, chain + ## HITS:1 COG:HP1299 KEGG:ns NR:ns ## COG: HP1299 COG0024 # Protein_GI_number: 15645912 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Helicobacter pylori 26695 # 1 208 44 252 253 305 68.0 3e-83 MGEDFILSQGGIPAFKGLYGFSGSVCVSVNEVIIHGIPTDYALKEGDIVGLDLGVNLNGW YGDSAITCGVGNISQENQRLIACAKDSLHFAISQIKVGMHFKELSYLIEQFILDYGYVPL RGFCGHGIGKKPHEEPEIPNYLEGNNPKQGYKIKEGMVFCIEPMICQKSGEPKILEDDWS VVSVDGLNGSHYEHTVAIINGKAEILSKE >gi|197282993|gb|ABQU01000057.1| GENE 24 11635 - 11853 241 72 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 72 1 72 72 97 59 8e-20 MAKDDVIEIDGIVKEALPNATFRVELENGHIILCHIAGRMRMNYIKILQGDKVKIELTPY SLDKGRITFRYK >gi|197282993|gb|ABQU01000057.1| GENE 25 12088 - 12201 199 37 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417907|ref|ZP_03655913.1| 50S ribosomal protein L36 [Helicobacter canadensis MIT 98-5491] # 1 37 1 37 37 81 100 6e-15 MKVRPSVKKMCDKCKVIKRKGVIRVICENPKHKQRQG >gi|197282993|gb|ABQU01000057.1| GENE 26 12212 - 12580 613 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417908|ref|ZP_03655914.1| 30S ribosomal protein S13 [Helicobacter canadensis MIT 98-5491] # 1 122 1 122 122 240 100 6e-63 MARIAGVDLPKKKRIEYALTYIYGIGLKASRDILNAVNISYDKRVQDLGEDEVSAIAKEI QAHHIVEGDLRKKVTMDIKALMDLGNYRGLRHRKGLPVRGQTTKNNARTRKGKRKTVGSA SK >gi|197282993|gb|ABQU01000057.1| GENE 27 12591 - 12983 670 130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224417909|ref|ZP_03655915.1| 30S ribosomal protein S11 [Helicobacter canadensis MIT 98-5491] # 1 130 1 130 130 262 100 1e-69 MAKRNVTKKRVVKKNIARGIIHISAAFNNTSVTITDEMGNVICWSTAGALGFKGSKKSTP YAAQQAVEDAVSKAKEHGIKELGVKIQGPGSGRETAVKSLGSIEGIKVLWFKDVTPLPHN GCRPPKRRRV >gi|197282993|gb|ABQU01000057.1| GENE 28 12993 - 13619 1057 208 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523915|gb|EEQ63781.1| 30S ribosomal protein S4 [Helicobacter pullorum MIT 98-5489] # 1 208 1 208 208 411 100 1e-114 MARYRGPVEKIERRFGVSLALKGERRLAGKSALDKRPYGPGQHGQRRGKISEYGIQLREK QKARMMYGVSEKQFRSIFVEANRLEGNTGENLIKLIERRLDNVVYRMGFATTRRFARQLV VHGHILVDGKRLNIPSAFVNAGQKIEICEKTKKNPQIQRAIELTKQTGIVPWVDVDQEKV FGIFTRLPEREEVVIPIEERLIVELYSK >gi|197282993|gb|ABQU01000057.1| GENE 29 13638 - 14627 1177 329 aa, chain + ## HITS:1 COG:HP1293 KEGG:ns NR:ns ## COG: HP1293 COG0202 # Protein_GI_number: 15645906 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Helicobacter pylori 26695 # 1 327 1 334 344 358 55.0 1e-98 MKSIKTSPHIPTKIEVRETGNNKVQITAYPFENGYAITLAHPLRRLLLGSSVGFAPIALR ISGVAHEFDSVRGVVEDVSQFIVNLKAIRFRIKDNSDNVSVDYKFNGSKVITGADLSNEL VEVVTPDIHLATINEDATLAFSIIIYKGIGYVPSEEIRASVPEGFMPLDAYFTPVTSATY TTENMLLEDDPNYEKIIFDIQTDGQVDPLTAFKNALSVMHKQMSIFNSELNIEMPETTVS EEERPELKVLSQTIDSLNFSARCFNCLDRSGIRYLGELVLLNEDQIKNIKNLGKKSLDEI TAKLDELGYPVNREIPEDLLQILKKKFSN >gi|197282993|gb|ABQU01000057.1| GENE 30 14645 - 14995 579 116 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523917|gb|EEQ63783.1| 50S ribosomal protein L17 [Helicobacter pullorum MIT 98-5489] # 1 116 1 116 116 227 100 5e-59 MRHGHGYRKLGRTSSHRKALLKNLSIALIANGKIETTLPKAKELQSYFEKLLTKARANDA MAHRLVFSHLQHKESVKKLVKEIAPKYANKNGGYTRIIKTRLRVGDAALMAIIELV >gi|197282993|gb|ABQU01000057.1| GENE 31 15188 - 15691 759 167 aa, chain + ## HITS:1 COG:Cj1186c KEGG:ns NR:ns ## COG: Cj1186c COG0723 # Protein_GI_number: 15792510 # Func_class: C Energy production and conversion # Function: Rieske Fe-S protein # Organism: Campylobacter jejuni # 1 167 1 167 167 202 61.0 3e-52 MAENVNRRDFLGMTLGAVAVVGVGASLVAMKSSWDPLPSVVSAGFTTIDLSSMQEGEYRQ VEYRGTPVYVIKKTAEMKKCEERDVVVGNADYSLGIQICTHLGCIPSYDSNTTEFHCACH GGRFDACGRNIFGPPPTPMAIPPFKIDGDKLVLGEEGPEYLKLVGKA >gi|197282993|gb|ABQU01000057.1| GENE 32 15701 - 16930 1127 409 aa, chain + ## HITS:1 COG:HP1539 KEGG:ns NR:ns ## COG: HP1539 COG1290 # Protein_GI_number: 15646146 # Func_class: C Energy production and conversion # Function: Cytochrome b subunit of the bc complex # Organism: Helicobacter pylori 26695 # 1 407 1 407 412 587 75.0 1e-167 MAQIEKANGIIDWLDQRLAIKPLMKVLMTEYWIPKNINFLWAMGVVLVVLFTLLVVSGLF LLMYYKPDTKLAFDSVNYTIMQEVKYGWLWRHLHAVSASVCFLIIYIHMFVAIYYGSYKR GREMIWITGMVLFGLFSAEAFSGYMLPWGQMSYWAAAVITNLFGGIPVIGPDLVVWIRGN FIVADATLTRFFMLHVVLLPVVIMLVIAVHFYSLRIPHVNNAYGEEIDFEKEAEKFKAGN KKESKVIPFWPMFLSKDFFVASFFLAILFYLTCYHFNFALDPINFDPADHLKTPPHIYPE WYFLWSYEILRGFFFSADLGLIAFGIANIIFILLPWLDRSKVVAPAHKRPAFMIWFWLLV IDMIILTIWGKLPPTGINAYIGFVVTIIFFLLLFVVLPIITKLEDKKNS >gi|197282993|gb|ABQU01000057.1| GENE 33 16942 - 17784 924 280 aa, chain + ## HITS:1 COG:jhp1461 KEGG:ns NR:ns ## COG: jhp1461 COG2857 # Protein_GI_number: 15612526 # Func_class: C Energy production and conversion # Function: Cytochrome c1 # Organism: Helicobacter pylori J99 # 1 280 1 285 285 286 50.0 2e-77 MKEFLALIVVVVITGVIYWGVEPFAHGQMYPKVSPADYTYADLKPLEAQGGNAANGKEIV TANCLACHSIKAEGLEMPFSPEDALAAYGVVPPDLSSAGLIYDKNFLGNVIKDVALATKQ THKFDGNHPMPAYNWMSDQEIADIVAYLQSIAPKELSNKEVFIDACGRCHDVKYDQWFAQ GGLKTYLGTKVPDLSMMIRSRNLEYLHTFINDPQKRLAGTAMPRVGLTQQAEDQVIAYME SVGDSKKAERESLGWKLVVFMVVMGVIAYLWKRKIWHDAH >gi|197282993|gb|ABQU01000057.1| GENE 34 17797 - 20109 1425 770 aa, chain - ## HITS:1 COG:aq_672 KEGG:ns NR:ns ## COG: aq_672 COG0068 # Protein_GI_number: 15606085 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Aquifex aeolicus # 6 760 8 741 746 532 38.0 1e-150 MQTYILNLTGTIQGVGFRPFVYKIATKYFLKGYVLNNNQGVKILIQGNQESIQNFLKELK NPPSAAKITSITQKKIPNKKIFSDFEIQKSQTHSIKTATIPADLALCQECINELFNPKDR RFLYPFISCTNCGGRYSLIHSLPYDRQNTAMANFKMCKICQQEYTNSNSRRFHSEINCCP NCGPQVFFTTHLNYNDKPLLDSQIIPFLKTTPNPIKNAIAALKNGKILALKGIGGYALIC DATNQESIQILRDRKNRPKKPFAIMCKDLKMAMSFASLNKKEKNLLTSQIAPIVLSYAKT KNKLPLHLIAPNLATLGIILPYAPLHYLIFNEIEFPLIFTSANISGEPIIKDFYTITQKL QGICDGVLLYNRDIFNPIDDSLIRILNKKTQILRRARGYLSDIPFSTPHTQKNFIALGAQ QKSTFCLKFHNKLLLSPHLGDLNNLESFLNFKQNLNLFTQQYQAKIDTFCADLHPNYAYK ELLPSKNTHFIQHHFAHLLSNIAENRISSEVLGVIFDGTGYGLDGNIWGGEFLFYNPKKP LTFQRIASFAPFYLLGGEVAIKDIRRLGIEALFVAFKEHYKTLKLPLLESLKKDYGKDIL TFFYKQHQNTQNYTCNSVGRIFDMVASLCNLTQKTSYEGEGGMLLESLAYKAQKNKIQAI SYSFAIKKNIILWDTMIQEIYYDLQNRIPIENIALNFHFTLANIIKHIVNQYETIALSGG CFQNAVLTQLTLQILKNKKVFLNQEIPCNDGGISFGQAYYMQLKTSKESC >gi|197282993|gb|ABQU01000057.1| GENE 35 20201 - 20836 667 211 aa, chain + ## HITS:1 COG:Ta1277 KEGG:ns NR:ns ## COG: Ta1277 COG0352 # Protein_GI_number: 16082276 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Thermoplasma acidophilum # 2 188 8 190 213 97 31.0 2e-20 MLEGIYAISDEKLTPYQKIFEMLELAIRGGISIFQLRDKTHKDNEIKQLCIELMDYCGQN NVLFVLNDRVELACEIKSKGLHIGKKDEIESYSVQELRGIRKDFCGVLGISCYGDLQLAQ NAKEMRADYIAFGACFASPTKAQAKVIPLDLFQKVTDIKKCAIGGITPSNIHYLTKADMI ACISSVWNGDIVQNLYNLKKNWKKESFNEML >gi|197282993|gb|ABQU01000057.1| GENE 36 20861 - 21157 282 98 aa, chain + ## HITS:1 COG:CAP0038 KEGG:ns NR:ns ## COG: CAP0038 COG2350 # Protein_GI_number: 15004742 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 4 97 1 94 96 72 35.0 1e-13 MQNLFVILVNYTKELSAIEEILSAHREYLKTGYKSGKLLASGPQNPRTGGIIIGKFINKQ EALDFTKQDPFYLNNAAKYDILEFNPVLHQDILKEFLV >gi|197282993|gb|ABQU01000057.1| GENE 37 21149 - 21439 287 96 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309353|ref|ZP_04808508.1| ## NR: gi|242309353|ref|ZP_04808508.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 96 16 111 111 183 100.0 3e-45 MKKILVICILGLILLSGCISPKTDAFLLGAGLGASATYYFLNGGKIDGIGKNSFQGTSQQ SIADTSIPSELEWYYFNQDLQEQIFLNQKQSQIPLN >gi|197282993|gb|ABQU01000057.1| GENE 38 21554 - 22030 531 158 aa, chain + ## HITS:1 COG:jhp0365 KEGG:ns NR:ns ## COG: jhp0365 COG1826 # Protein_GI_number: 15611433 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway components # Organism: Helicobacter pylori J99 # 1 157 1 153 160 82 37.0 3e-16 MFGMGFFEILVIVAVAIIFLGPEKLPKALVDAAKFFKAVKKTMDEAKESLDKEVNLSKIK EEALAYKNSLTQGVQNLTKEMELKEITSLDLEVDTPKTHSNSISSEAKEQTNNHQIFGEN GIEIKPTTNKQSLNFKEEISQEAKNIQDTQKESEKKNV >gi|197282993|gb|ABQU01000057.1| GENE 39 22023 - 22760 656 245 aa, chain + ## HITS:1 COG:jhp0364 KEGG:ns NR:ns ## COG: jhp0364 COG0805 # Protein_GI_number: 15611432 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway component TatC # Organism: Helicobacter pylori J99 # 1 245 1 238 249 223 51.0 2e-58 MFEDLKPHIQDLRKCLIIIALALLVTFSVSFYFWEIILDWMVAPLSAALPKGRESVIFTQ VGEAFFTAIKVAFFSAFIFALPIIFWQIWSFVAPGLYENEKKLVIPFVMFGTFFFLCGCA FAYYIAFPIGFGYLIGFGSQLFTALPSIGDYVGFFAKLMVGFGISFELPVVTFFLARIGL VTDKTLKDYFKYAIVFIFILAAILTPPDILSQFLMAIPLTILYGLSIIIAKMVNPYKPEE LEDNE >gi|197282993|gb|ABQU01000057.1| GENE 40 22753 - 23796 1118 347 aa, chain + ## HITS:1 COG:Cj0577c KEGG:ns NR:ns ## COG: Cj0577c COG0809 # Protein_GI_number: 15791937 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Campylobacter jejuni # 3 347 4 342 342 335 50.0 7e-92 MNELLSTSYDYELPKELIATQPITPKEDAKLLVYNRKDRSIIHSTFRDFMQFLPKETLLV FNDTKVIPARIYGVKIFQNTQQEGGKIEALFHKEIGENLYLMQFRGRLKEGSRVKFEGGI FAKIIKDCGMGFKEASFFRIDDESPLDKQEFFGFLDSCGHTPLPPYIKREASQQDREEYN SVFAKNLGAIAAPTASLHFSQESFQQLQREFNNAFVTLHVGAGTFLGVSVENILEHKMHK ESFIIPQESIQKIQEATHITAIGTTAARTIEYFARTKQAQGECDLFLHLQNKPILTDALL TNFHLPKTTLLMLVASFVGLEETKRIYQEAIKKKYRFYSYGDGMLVL >gi|197282993|gb|ABQU01000057.1| GENE 41 23793 - 24278 192 161 aa, chain + ## HITS:1 COG:HP1063 KEGG:ns NR:ns ## COG: HP1063 COG0357 # Protein_GI_number: 15645677 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Helicobacter pylori 26695 # 11 155 5 146 178 100 41.0 1e-21 MNLGVEISKKLEDYAIMLLEWNKIHSLSGAKSLEMIQKNIEDSLYPLEIESLKLRDKKFL FDVGSGNGFPAIPLGIVLGSKVILCEPNAKKAAFLQNVKVELGLENFCVMRQKVEQITME DKPDIITSRATFGVSEFLVKCQKIISKESLILLYKRLKCRE >gi|197282993|gb|ABQU01000057.1| GENE 42 24354 - 24578 241 74 aa, chain + ## HITS:1 COG:no KEGG:NIS_0357 NR:ns ## KEGG: NIS_0357 # Name: not_defined # Def: hypothetical protein # Organism: Nitratiruptor_SB155-2 # Pathway: not_defined # 1 72 2 65 66 62 51.0 4e-09 MLKWLLIVLLILAVYYFFRKMSVKKEENQNFKKHNKNEEIMLECKKCGTYISSKEAIISN GKYYCSKECLEADK >gi|197282993|gb|ABQU01000057.1| GENE 43 24588 - 24956 416 122 aa, chain + ## HITS:1 COG:no KEGG:Suden_0381 NR:ns ## KEGG: Suden_0381 # Name: not_defined # Def: hypothetical protein # Organism: T.denitrificans_ATCC33889 # Pathway: not_defined # 1 119 1 121 130 73 36.0 3e-12 MLILNHSVVSPLEICVVDSLQDIQDSLPSAFLILRGDLKIAQFCYQNGIDYASVIQNIKE ALLLVNLGVKFLICEDLEMAKELQNLAENYLFDAKVLLCIKEEEEMLEIAKLGIDGVIFW KN >gi|197282993|gb|ABQU01000057.1| GENE 44 24944 - 25594 443 216 aa, chain + ## HITS:1 COG:no KEGG:WS1181 NR:ns ## KEGG: WS1181 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 28 212 40 225 225 160 49.0 3e-38 MEELESYHPFCNLNQDSLGDLKAIVHFKYYKKQEIVFYEEDKVSDIYFLLEGAVKAYKVD RFDNEIFFGIFKNGLLNDCKDKDKMATFVNIECLEDSLIACFESDKLRLLFEKSPQILKL FFEESLKRVGVLEEIVQRELVFDSTAKIAYSLYSDLEEFNMHKKQENAAFLNIQPETLSR ILKKLHRDGVIQTNSLGKIEILDSQRLQMIFKQEAK >gi|197282993|gb|ABQU01000057.1| GENE 45 25591 - 26026 373 145 aa, chain + ## HITS:1 COG:no KEGG:WS1180 NR:ns ## KEGG: WS1180 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 145 1 145 460 144 52.0 8e-34 MTKIVTRLIVIGILTTLCIGVMIGSVILINQRSIQDGYLINIAGKERMLTQKITKEVFII NSQNQQNFDELNLAIKEFEENLHTLRYGNQKKNINPPSNSIIIKQLALIEKQWLEFKKVV QDFKEVSYKFCKNKLFLDENNSIIL Prediction of potential genes in microbial genomes Time: Tue May 24 02:37:57 2011 Seq name: gi|197282992|gb|ABQU01000058.1| Helicobacter pullorum MIT 98-5489 cont2.58, whole genome shotgun sequence Length of sequence - 8898 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 1, operones - 1 average op.length - 7.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 40/0.000 + CDS 3 - 935 870 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit 2 1 Op 2 3/0.000 + CDS 932 - 3301 1940 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 3 1 Op 3 3/0.000 + CDS 3298 - 4599 1202 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase 4 1 Op 4 4/0.000 + CDS 4601 - 5425 554 ## PROTEIN SUPPORTED gi|227423810|ref|ZP_03906912.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SSU ribosomal protein S1P 5 1 Op 5 . + CDS 5497 - 7173 2778 ## PROTEIN SUPPORTED gi|239523937|gb|EEQ63803.1| 30S ribosomal protein S1 6 1 Op 6 . + CDS 7187 - 7666 469 ## WS1312 hypothetical protein 7 1 Op 7 . + CDS 7681 - 8896 1190 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases Predicted protein(s) >gi|197282992|gb|ABQU01000058.1| GENE 1 3 - 935 870 310 aa, chain + ## HITS:1 COG:Cj0897c KEGG:ns NR:ns ## COG: Cj0897c COG0016 # Protein_GI_number: 15792227 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Campylobacter jejuni # 1 310 22 330 330 425 65.0 1e-119 IAVMGKKGILTARFAELKNCDETQKKALAKELNLLKVEFEKALANKKEELSLRELQEKLQ AQKIDVSLFSASNFRGSNHPIMLMLDKIVEYFEGMNFMVKTGPLVEDDFHNFEALNLPKY HPARDMQDTFYFKDGKILRTHTSPVQIRTMEAQKPPIRMICPGNVFRCDYDLTHTPMFHQ VEGLVVENGKDSVNFANLKFILEDFLKYIFGDVKVRFRSSYFPFTEPSAEVDMSCIFCKG EGCRVCSNTGWLEVLGCGCVSENVFKAVGYENVSGYAFGLGVERFAMLAYSVPDLRAFFE SDLRILEQFK >gi|197282992|gb|ABQU01000058.1| GENE 2 932 - 3301 1940 789 aa, chain + ## HITS:1 COG:jhp0979_2 KEGG:ns NR:ns ## COG: jhp0979_2 COG0072 # Protein_GI_number: 15612044 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Helicobacter pylori J99 # 147 789 2 624 625 402 38.0 1e-111 MKFNRSILNKILPLEDISSDEIYKTLNKIGLEVESFQKLCAPKKVVVGKIIECKKHPDAT KLNVCQVAVGGSEENYEMRQIVCGAPNAREGIFVAVALEGAVLPQITIKKAVLREVESCG MLCSTTELGFPAINDGIVELDESIGVLEIGKELLEYSYFNDEIYEISITPNRGDCMSLLG IARDLSVAFGLKRKPLEKPMALENAPGIGRVLQVVTDRKHTSSLMYQAIEIGAIKIPLCV NLFLAYNESLTNNLLLNALNFSTLISGVILNAYPQTFCQLGKGANEDRVTLKLKQDELGF ESIYCGEKKLSAIGISSFNEENIQNLKENEKEFIILEASYIPPKIVAQKVLETKTKVDPK VFQRSSRGSNPNLKLGLDVLGDLLLGNDAVLYNDIQELASEQTLPSITIEIPLIAKIIGV PLDKSKVVQLLQALEFQVEILTDENLLVVVPPLFRHDISNYQDIAEEIIRFIGIDEVPSS PLMFVQGNQSSEESRLYHFKRELAKKAIGTGFSESVHFVFQDKEKLLKYGFQTLQEELEL LNPITRELNTLRPSLLLGLLQAAKLNRNNGFNSIALVEVGETYDARRNQNTKIAFLQSGF VMEERYPNAKGIKGDYFIFANHIARVIGDFTLRECVSEIALYHPGQCAKIIQNNQEVGIL STLHPQVAEEFGLDETYLCEIEVDKLVHLMPKVKDYSKFQKVVRDLSIVVNKNIPYYKLR EVIGNLGIADVVGFYPLDIYHDENLGEEISLTIRFEIQSSEKTLEEKDIASIMDKILESL IENYKVRLR >gi|197282992|gb|ABQU01000058.1| GENE 3 3298 - 4599 1202 433 aa, chain + ## HITS:1 COG:Cj0895c KEGG:ns NR:ns ## COG: Cj0895c COG0128 # Protein_GI_number: 15792225 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Campylobacter jejuni # 15 427 14 422 428 420 54.0 1e-117 MILEVCKAQSFKLAIEKIASDKSISHRCAIFSLLSDKPSYIQNYLKGEDTLDTLKIAKRL GLEVKEESKGMVFLPPKSIKEPSEILDCGNAGTAIRLYLGLLSAQKGMFVLSGDCYLNNR PMKRVVEPLRSIGATIFGRDNGNFAPLVVIGNQGLKSFEYVSKIPSAQVKSALILSGLFA NGDSKYFEPELSRDHTERMLRGMGAEIESKIHQGGDVEVSISPLKQALKPLEMNIPADPS SAFFFAVAVAIMPESYGLLKNVLLNPTRIEAFKMLEKMGVKIAYKENSNTYESIGDIEIV SPKKLQSIEVNEKISWLIDEIPALAIAMACANGVSKVTNAKELRVKETDRIKAVVENLKL CGIEAKELDDGFVITGGEIQKAEVSSYGDHRIAMSFAIAGLKNGMRITQAEYINISFPNF LEILGQITQTKGN >gi|197282992|gb|ABQU01000058.1| GENE 4 4601 - 5425 554 274 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227423810|ref|ZP_03906912.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SSU ribosomal protein S1P [Denitrovibrio acetiphilus DSM 12809] # 1 273 6 281 848 218 38 2e-56 MQVKLAKNYGFCFGVRRAIKLAESKPNGITLGPLIHNAKEINRLKEKFNVVVNENIQEIP ANAEVIIRTHGITKEDLQRLKQKTKNITDATCPFVTKPQEICEKMSNEGYAIIIFGDEMH PEVKGVMSYCKTTPLVVENLEALKNAKIPDKVVLISQTTKNIELFLEIADFLIRQCSECR VFNTICNATFDNQESARNLAKEVDIMIIVGGKNSSNTKQLYNISKEYCQDCYLVEDYQEL QKEWFGGKKLCGVSAGASTPNWIIDKIVQTIQKY >gi|197282992|gb|ABQU01000058.1| GENE 5 5497 - 7173 2778 558 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523937|gb|EEQ63803.1| 30S ribosomal protein S1 [Helicobacter pullorum MIT 98-5489] # 8 558 1 551 551 1074 100 0.0 MAAVGINMQELDEIIVDEDFASMLEQYEKKESEKVSQGEIVSIENGQVIIAVPGEKKEGI ILISEIQDSQGNLLFGVGDLLPIVIMGKRNEQPLLSYKKAIRREKIREYIKSLGEDYKDK IVEGVVVKKNKGGYIVESDAVEFFMPKFAAAFKEGNKNEGKRIKACIINVKPEEDSIVIS RKRLFEIENNIKKDVIDNLLKQEGNLKGRIKKITSFGMFVDVEGVEGLVHYTEISHKGPV NPSKLYKEGDIVSLKVLSYDKEKRRLALSIKDTIEDPWKEVENELEVGDAIKVVVSNIEP YGVFVDLGNDIEGFLHISEISWNKNIQNPEEFLKTGQEIDVEVIEIDTKERRLRVSLKKL LDKPFDQFAKKYKEGDILKGVVATLTDFGAFIKLDGIDGLLHNEDAYWNKNEKCKDLMKI GEEVEVKIAKIDKEKERISLTRKGIISSPVEEFAKRHSEDEEVEGVVRDIKDFGVFIKID EDMDALIRNEDLFPIKKEDVKVGDKIKGVISLIDTQNNRIRVSIRRLEKQKEKANLKNFN SNADDKMTLGDIIKNQIS >gi|197282992|gb|ABQU01000058.1| GENE 6 7187 - 7666 469 159 aa, chain + ## HITS:1 COG:no KEGG:WS1312 NR:ns ## KEGG: WS1312 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 159 1 159 159 112 40.0 3e-24 MQTRLLIGIFSIFTCIILYVLVWNYVKAMSSYILPSISSYQLTSTEDNASIGSAGWIDQL SKREQSSFIYPAAELKVKLLFEDNLNRVEKETFRVSVGVIDDYQFFCINQVLSANNIEYS YYKIGENIWLVVTTENEGYLRSVLDELKHYDINYTLSKS >gi|197282992|gb|ABQU01000058.1| GENE 7 7681 - 8896 1190 405 aa, chain + ## HITS:1 COG:jhp0984 KEGG:ns NR:ns ## COG: jhp0984 COG0111 # Protein_GI_number: 15612049 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Helicobacter pylori J99 # 4 403 2 399 524 515 61.0 1e-146 MSKFTIMVCDHIHQSGLDLLAKATDVEMLNLANLPKDELKKELYKADIAITRSSTDVDES FLEAAKKLRAVVRAGVGVDNVDIEASSKKGVVVMNVPTANTIAAVELTCAHILSAIRTFP SANAQLKNERKWKREDWYGTELKGKKLGIIGFGNIGSRVGKRMKAFEMEVIAYDPYINPA KATDLGISYTKDFDEILACDIITIHTPKNKETINIIDKEQIAKMKEGVVLINCARGGLYN EDALFEALQSKKVRWAGIDVFTKEPAISNKLLDLPNIYVTPHIGANTLESQEKIAIEAAE AALEAARGSSFPNALNLPIKDSDLPNFMRAYLELMQKMAFFAIQVNKSEIRSIKLEVQGE ISQYLSSLSTFALVGILNATIGDKVNYVNAPYVAKERGIEISLES Prediction of potential genes in microbial genomes Time: Tue May 24 02:38:16 2011 Seq name: gi|197282991|gb|ABQU01000059.1| Helicobacter pullorum MIT 98-5489 cont2.59, whole genome shotgun sequence Length of sequence - 53267 bp Number of predicted genes - 59, with homology - 56 Number of transcription units - 18, operones - 12 average op.length - 4.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 366 424 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + TRNA 450 - 536 75.0 # Leu CAA 0 0 + Prom 791 - 850 8.4 2 2 Op 1 40/0.000 + CDS 916 - 2529 1174 ## COG0642 Signal transduction histidine kinase 3 2 Op 2 . + CDS 2543 - 3214 825 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 4 2 Op 3 2/0.000 + CDS 3278 - 4999 1376 ## COG2812 DNA polymerase III, gamma/tau subunits 5 2 Op 4 3/0.000 + CDS 5000 - 5407 260 ## COG0802 Predicted ATPase or kinase 6 2 Op 5 17/0.000 + CDS 5400 - 6122 265 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 7 2 Op 6 . + CDS 6119 - 7402 1072 ## COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 8 2 Op 7 . + CDS 7465 - 7923 725 ## WS0076 hypothetical protein 9 2 Op 8 40/0.000 + CDS 7966 - 8631 759 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 10 2 Op 9 . + CDS 8631 - 9923 965 ## COG0642 Signal transduction histidine kinase + Prom 9932 - 9991 9.2 11 3 Op 1 . + CDS 10018 - 10443 336 ## WS1059 hypothetical protein 12 3 Op 2 . + CDS 10453 - 10812 514 ## COG1886 Flagellar motor switch/type III secretory pathway protein 13 3 Op 3 . + CDS 10809 - 11255 327 ## gi|242309381|ref|ZP_04808536.1| predicted protein 14 3 Op 4 . + CDS 11259 - 12110 694 ## COG0810 Periplasmic protein TonB, links inner and outer membranes 15 4 Op 1 . - CDS 12104 - 12964 986 ## COG2107 Predicted periplasmic solute-binding protein 16 4 Op 2 5/0.000 - CDS 13006 - 14022 715 ## COG0859 ADP-heptose:LPS heptosyltransferase 17 4 Op 3 . - CDS 14019 - 15110 732 ## COG0438 Glycosyltransferase 18 4 Op 4 . - CDS 15107 - 15598 271 ## COG0703 Shikimate kinase 19 4 Op 5 . - CDS 15585 - 16295 710 ## WS1496 hypothetical protein 20 4 Op 6 . - CDS 16292 - 16546 225 ## WS1495 hypothetical protein 21 4 Op 7 3/0.000 - CDS 16546 - 17817 1816 ## COG0148 Enolase 22 4 Op 8 . - CDS 17831 - 18868 1240 ## COG0468 RecA/RadA recombinase - Prom 18890 - 18949 9.8 + Prom 18879 - 18938 10.1 23 5 Op 1 . + CDS 19134 - 19343 223 ## gi|242309391|ref|ZP_04808546.1| predicted protein 24 5 Op 2 31/0.000 + CDS 19353 - 20894 1384 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 25 5 Op 3 . + CDS 20904 - 22028 1064 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 26 5 Op 4 . + CDS 22039 - 22146 86 ## + Term 22167 - 22201 0.1 + Prom 22150 - 22209 2.9 27 6 Op 1 . + CDS 22335 - 22778 395 ## COG2231 Uncharacterized protein related to Endonuclease III 28 6 Op 2 . + CDS 22790 - 24091 1325 ## COG2195 Di- and tripeptidases 29 6 Op 3 . + CDS 24156 - 25016 853 ## COG0760 Parvulin-like peptidyl-prolyl isomerase 30 6 Op 4 . + CDS 25033 - 25482 413 ## gi|242309397|ref|ZP_04808552.1| predicted protein 31 6 Op 5 2/0.000 + CDS 25538 - 26347 541 ## COG0421 Spermidine synthase 32 6 Op 6 . + CDS 26337 - 26933 403 ## COG0237 Dephospho-CoA kinase + Term 27027 - 27093 30.0 + TRNA 27005 - 27080 78.8 # Ala GGC 0 0 + TRNA 27086 - 27162 77.5 # Arg GCG 0 0 33 7 Op 1 . + CDS 27323 - 27442 166 ## 34 7 Op 2 . + CDS 27463 - 28374 587 ## C8J_1427 hypothetical protein + Prom 28438 - 28497 7.9 35 8 Tu 1 . + CDS 28523 - 28936 456 ## HH1059 hypothetical protein 36 9 Op 1 . - CDS 28954 - 29595 551 ## COG0863 DNA modification methylase 37 9 Op 2 . - CDS 29629 - 30978 1138 ## COG0015 Adenylosuccinate lyase - Prom 31054 - 31113 8.1 + Prom 30931 - 30990 4.4 38 10 Tu 1 . + CDS 31045 - 31986 681 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 39 11 Tu 1 . - CDS 32034 - 32324 139 ## gi|242309405|ref|ZP_04808560.1| predicted protein - Prom 32357 - 32416 9.8 40 12 Op 1 3/0.000 - CDS 32548 - 33513 1148 ## COG0113 Delta-aminolevulinic acid dehydratase 41 12 Op 2 40/0.000 - CDS 33506 - 34756 905 ## COG0642 Signal transduction histidine kinase 42 12 Op 3 . - CDS 34749 - 35435 933 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 35480 - 35539 6.9 - Term 35477 - 35523 -0.9 43 13 Op 1 . - CDS 35671 - 36090 456 ## gi|242309410|ref|ZP_04808565.1| conserved hypothetical protein 44 13 Op 2 . - CDS 36081 - 36329 363 ## WS1814 hypothetical protein - Prom 36362 - 36421 5.6 45 14 Op 1 21/0.000 - CDS 36426 - 37934 1299 ## COG0134 Indole-3-glycerol phosphate synthase 46 14 Op 2 10/0.000 - CDS 37931 - 39553 1496 ## COG0547 Anthranilate phosphoribosyltransferase 47 14 Op 3 . - CDS 39575 - 41044 1386 ## COG0147 Anthranilate/para-aminobenzoate synthases component I - Prom 41123 - 41182 5.9 + Prom 40997 - 41056 7.2 48 15 Op 1 37/0.000 + CDS 41103 - 42419 1301 ## COG0133 Tryptophan synthase beta chain 49 15 Op 2 . + CDS 42435 - 43193 265 ## PROTEIN SUPPORTED gi|149002101|ref|ZP_01827055.1| ribosomal protein L11 methyltransferase + Term 43352 - 43398 0.0 50 16 Op 1 . - CDS 43446 - 44117 620 ## COG0325 Predicted enzyme with a TIM-barrel fold 51 16 Op 2 1/0.250 - CDS 44127 - 45197 1056 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 52 16 Op 3 1/0.250 - CDS 45214 - 45759 270 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 53 16 Op 4 3/0.000 - CDS 45756 - 46538 968 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 54 16 Op 5 3/0.000 - CDS 46535 - 47449 1109 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 55 16 Op 6 3/0.000 - CDS 47456 - 48715 1258 ## COG0612 Predicted Zn-dependent peptidases 56 16 Op 7 . - CDS 48763 - 49818 989 ## COG0167 Dihydroorotate dehydrogenase 57 16 Op 8 . - CDS 49811 - 49900 63 ## - Prom 49920 - 49979 5.8 58 17 Tu 1 . + CDS 50175 - 50630 201 ## CJE1603 capsular polysaccharide biosynthesis protein, putative 59 18 Tu 1 . - CDS 50699 - 53257 1603 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 Predicted protein(s) >gi|197282991|gb|ABQU01000059.1| GENE 1 1 - 366 424 121 aa, chain + ## HITS:1 COG:HP0397 KEGG:ns NR:ns ## COG: HP0397 COG0111 # Protein_GI_number: 15645025 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Helicobacter pylori 26695 # 6 121 408 524 524 126 61.0 1e-29 NLQNVYKNQIRLTLLTQEGEFSVSGTVFNEDTPKIVEINHFEMDIEPKGRMILFRNNDTP GVIGHVGTTLAKYNINIADFRLGRYGKEALAVILVDDEVSNEVIKELSSIKACLAIKYVV L >gi|197282991|gb|ABQU01000059.1| GENE 2 916 - 2529 1174 537 aa, chain + ## HITS:1 COG:Cj1492c_2 KEGG:ns NR:ns ## COG: Cj1492c_2 COG0642 # Protein_GI_number: 15792807 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Campylobacter jejuni # 272 500 1 210 226 117 37.0 5e-26 MEKKIFGTSLEAKARILVFNIACGLLSLAVVSYVFYFSLKYDYETLFSEYHQSLIGLEEL RQIVNGAQAILMQPNQESQMIELREKIIEYWEAYQRVEETALDDNYLIYLVLQVYYFFNQ DDFGLKEEAEMQQKIDDISKLDNQIYIFLDILKKASNNQENHIEELKYQVAQLNKEISNL IHSSLNLVEIKKDRNSTLHSILHKAVLAIMCLIMVITIWLSYLVLSNIKLLHKTLEIKIK EKTKELRDLNDSLQETIKKEVLESRKKDQIMYQQARLASMGEMIGNIAHQWRQPLNALML LIQAFKVKSQNGKLTQEFIEVQVEEGLKIAKRMSRTIEDFRNFFHSSSQKEFFNLRENIE DSVSLVSAFLKQNEIQLEIECPNDIVLYGYKNSFSQVILNLIKNSEDVLKERNIAPAKIK ISVSQDNKNNVLPKNNKQGGCVRILFMDNGGGVRLEDIQKIFEPYFTTKHKSVGTGIGLY MSKQIIEKQMQGSIEVKNVKWQTDYECQKRECLENCQVQSGECGAQFIITIPLKIEE >gi|197282991|gb|ABQU01000059.1| GENE 3 2543 - 3214 825 223 aa, chain + ## HITS:1 COG:Cj1491c KEGG:ns NR:ns ## COG: Cj1491c COG0745 # Protein_GI_number: 15792806 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Campylobacter jejuni # 11 138 6 132 226 72 35.0 4e-13 MLSKNDEAMMRKIRVLYVEDEEDILRFASMVLEDYVDKLFIARNGKEALEILKKENIDLI ITDILMPKISGIELIREIKKNPLCDTAVIVATAHTETQYLLECIELRVDGYILKPIDVDE LLKTILKAILPKFQASELRAKNVLLNAISVFVGGKKIEIIKYLIEHSDEENIFYGSYEDI VQELGVSKPTVVKTFRQLIDTGLLVRLKNKIYKIQPDIAQYRE >gi|197282991|gb|ABQU01000059.1| GENE 4 3278 - 4999 1376 573 aa, chain + ## HITS:1 COG:jhp0655 KEGG:ns NR:ns ## COG: jhp0655 COG2812 # Protein_GI_number: 15611722 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Helicobacter pylori J99 # 6 463 2 468 582 414 52.0 1e-115 MEQHNEALALKYRPMDFDELVGQEAVSRTLSLALESKRLSHAYLFSGLRGSGKTSSARIF ARALQCENGPKAKPCGVCANCVAANPHKMSHIDIIELDGASSRKIDDIRDLIEQTKYRPN MGRYKIFIIDEVHMLTKEAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHFRFK RISDKSIFNHLKSILHKENITYQDEALNMLIRSGSGSLRDTLTLLDQVIIYSNYNITAES CASMLGLINPQSLSDFFDEIFKKDKKVLLETIEGFFEYECEMLLDEMSIFLKDKLLSAED VRYSPVIVDRFFRIITQAKQLLSLGCDDNFVLTLSIFKMLEALKIEDIDKTIKTLEQGLL DVGESRQNLKADRIEIPKQESIVTPKAEIKPQSIKGADLFALLVKRIYERNYELGEIFEK NIHFISYENGVLTWGSCVTGEEKQRLSNSYSNVIKGIVLEIFGIETRIEFVAQEPKGDCN QTITQEKANKTESIKEEAEISKIQEISTPKEEQIEIPQYTETPKTTIKENQDIPNPQKNI QDEVNEALELPLLQKAKELLEIRQIKVRPKAEG >gi|197282991|gb|ABQU01000059.1| GENE 5 5000 - 5407 260 135 aa, chain + ## HITS:1 COG:jhp0654 KEGG:ns NR:ns ## COG: jhp0654 COG0802 # Protein_GI_number: 15611721 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Helicobacter pylori J99 # 4 133 1 130 133 98 40.0 3e-21 MKILEVSQDSLQQVCEALELKKNRGIYLLEGDLASGKTTLVKQMVQYLGNKSMVTSPTFL LSWDYGGGIYHYDIYQKNLQELFELGFLEELEKEGWHFVEWGDEQLAQVLKKIGMDFKRI VISPKNHLREYRIYA >gi|197282991|gb|ABQU01000059.1| GENE 6 5400 - 6122 265 240 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 4 217 9 221 309 106 33 2e-22 MHKLEAKNLVKTIKKTKIISDISMEVRSGEVVGLLGPNGAGKTTSFYIICGLLLPSSGKV FFDNRDITGLSLHKRSQLGIGYLPQESSVFKDLSVEENLMIAAEVCLENEEERMKRIEEL LEEFNIEPIRNRKGVNLSGGERRRVEIARALVKKPKFILLDEPFAGVDPIAVLDIQNIIK KLLKFNIGVLITDHNVRETLSVCNRAYVINKGMLLASGDSNEIYENELVRRHYLGENFRV >gi|197282991|gb|ABQU01000059.1| GENE 7 6119 - 7402 1072 427 aa, chain + ## HITS:1 COG:Cj0670 KEGG:ns NR:ns ## COG: Cj0670 COG1508 # Protein_GI_number: 15792024 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog # Organism: Campylobacter jejuni # 3 425 2 414 416 383 48.0 1e-106 MKLRTQASTTLKAKLSSTLKSWLPILQSGVGELEETLGEFAKDNPYLEIQSGIATDFSSQ SKKRKEGPRGLKNIDNEGIERFCIQEESLEETLKNQISPPLFPTKTSQEIAQKIIENLNE EGYFEGDKEKIAKECDSSVEEVEKIRKRFAYLEPSGIGAENLIESFYFQLDSMDIQSEVY SLCLRILGNLEKHSQYKNETCYAKAMCVIQSFKNPPALEYYQKEPEIIPDILIIQEAQSI QVQINSQYYPSIQIEMPKKEAKEKIKHDFIKNKVKEARDLVDALEMRKATLYKIGLMIVE YQYDFFMGGEIKPMKLKDLAEEFGHASSTISRAISNKFLECSRGIFPLRNFFATALDEDT ANTTIKEFVSNLIKNENRQKPLSDNRILELIEEKFNIKIVRRTITKYRAQLNIASSSERK RLYKMSV >gi|197282991|gb|ABQU01000059.1| GENE 8 7465 - 7923 725 152 aa, chain + ## HITS:1 COG:no KEGG:WS0076 NR:ns ## KEGG: WS0076 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 4 116 2 114 158 108 48.0 4e-23 MKAKTLISVLVGTALSVSVALAADFSKKSNEELVNLSGKVAPKDYPDYKMEIHKRMQKME IQEGRDFADNLRKNAQSNYDKMTMKEYREYRDEIRKETEKRIDSMTREEARDSGLLRGGY GRGYGYGKGHRGHYRGDCFEGRYPDCPVGPRP >gi|197282991|gb|ABQU01000059.1| GENE 9 7966 - 8631 759 221 aa, chain + ## HITS:1 COG:Cj1223c KEGG:ns NR:ns ## COG: Cj1223c COG0745 # Protein_GI_number: 15792547 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Campylobacter jejuni # 1 217 1 220 221 194 53.0 7e-50 MKAKILLLEDDMALQEIIAECLSEEGYEVVCCNDGIEASNKAYEENFDILLLDVMVPNLD GFETLKSIHQSGRRIPAIFITALNSIKDLEIGFKSGCDDYLRKPFELSELLLRIEALLKR SNRMQIYDFGNGYSFDCGEGILYLEGKVCKLSAKERELLKILLVNENHFVPLEEIYSALW GYEEEPSELSLRVYIKDLRQIVGKDNILTRRGEGYCYKKAL >gi|197282991|gb|ABQU01000059.1| GENE 10 8631 - 9923 965 430 aa, chain + ## HITS:1 COG:Cj1222c KEGG:ns NR:ns ## COG: Cj1222c COG0642 # Protein_GI_number: 15792546 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Campylobacter jejuni # 4 430 2 396 396 249 36.0 1e-65 MNESKKIVLKISLLYALTTLIFLAIVFYGWYQKEKESLIEERVLQLRESTHNLAMHLYEK LQLNYNGNFFKILEETSKELEIPFSLSTSSGEIIFSTLKEVENTKEFRQILQERGIPISF RKDHRHIDRIVIAGDNVYLVTQRIGGRFWSLVNMELYKQNLLDTLERRNDFFMIIQDNGI SKEIYRLWGLIGGSFLLVLFGVSVVAYFLVRLSLKPLEEKIQALNNFIKDSTHEINTPLS IILMSIERIKKEDLKEQDLQKFERIKMAANTLGQIYQDLVFYNFPHLQGNNLEKIAMNDL LKERVSYFEPFYKKKNISIVLKAESSTLMANKSRIIRVVDNLLDNALKYTQSGGEVEVFV GNNFLKIKDNGCGMEKEDLKRIFDRYYRCNKDQGGFGIGLALIKEICNIYKIAIECESQK GKGTTFVLRW >gi|197282991|gb|ABQU01000059.1| GENE 11 10018 - 10443 336 141 aa, chain + ## HITS:1 COG:no KEGG:WS1059 NR:ns ## KEGG: WS1059 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 136 1 134 139 84 37.0 1e-15 MEKIIINAFRQVLKDTLGETPKRVTRKLTRGFLSSIDIFLENEEKDTITFVSSKDFLAKL GNGLFGEEELDEIALKDLSQELANLTIGLAKVLAVTENIKFNISTPRVYGFGEFQDTHSS SFNFSLGRGAKCSLFMHNKSL >gi|197282991|gb|ABQU01000059.1| GENE 12 10453 - 10812 514 119 aa, chain + ## HITS:1 COG:jhp0531 KEGG:ns NR:ns ## COG: jhp0531 COG1886 # Protein_GI_number: 15611598 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar motor switch/type III secretory pathway protein # Organism: Helicobacter pylori J99 # 15 115 23 123 123 132 63.0 1e-31 MPADEFTLAKIQAPKQEDLARYLEGIMNNYGGLLDMKVLFHAELGSTKIALKEILQFEKG SIIDLQKPAGESVEIYINGRIVGKGEVMVYEKNLAIRVNEVLDSNAIIYYLTRESISTT >gi|197282991|gb|ABQU01000059.1| GENE 13 10809 - 11255 327 148 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309381|ref|ZP_04808536.1| ## NR: gi|242309381|ref|ZP_04808536.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 148 1 148 148 214 100.0 1e-54 MKIVLVILSFITFLFAEDKDSLEQGLKFSSENNQTFPFEMAKSPLESINFYQYSGVILVL IGLLILLWYIKKRLYYKEQKLSLVDFFKKKEANSIQIVSSFSLSMNAKLVVFEIYQKRYI VILSQNGATLVDKYSIKDFGELLEQEKQ >gi|197282991|gb|ABQU01000059.1| GENE 14 11259 - 12110 694 283 aa, chain + ## HITS:1 COG:jhp0529 KEGG:ns NR:ns ## COG: jhp0529 COG0810 # Protein_GI_number: 15611596 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein TonB, links inner and outer membranes # Organism: Helicobacter pylori J99 # 157 280 186 312 317 129 55.0 4e-30 MRNNFIALLLSLLVHIVIFLLLLLEFKKDDVYQPPKYGTKEGERINIKNFKFSQAAQMIP PQNNAQMLESPLTQPSNTQSQPQQESNKNQKEEQTEIAQTTPPKQTKEKSPTKITKPKKT EDSRKIQPKSSNQSNHNQNSLASSLKSSQIGPMLDNKPSSPSIYDYGKDMGNQEIKELYG DDLYSLNLEERKFIEDNLSGIGRITQKYLKYPQLAGQMGQQGDNIVEFYLHPNGDISDLK LLTPSGYRLLDENSIHTIEIAYKDYPYPAVKTKIRIRVMYRIY >gi|197282991|gb|ABQU01000059.1| GENE 15 12104 - 12964 986 286 aa, chain - ## HITS:1 COG:Cj1674 KEGG:ns NR:ns ## COG: Cj1674 COG2107 # Protein_GI_number: 15792978 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Campylobacter jejuni # 1 285 1 285 286 387 67.0 1e-107 MRTIQIGHSPDADDIFMYYAIAFGWVGNTIHFQNQALDIQTLNEMALDNILDISAISFGV YPFLAQEQALLRTGVSFGEGYGPKLIKKRSTKLKKNFKVALSGAHTTNAMLFKIAYPNAR IYYKNFLEIEKAVLEGEVDAGVLIHESILQYDSSLEVECEIWDIWNDLNKQNLPLPLGGM CIRRSLPLNVAIECEEILTKAVKVALKNKPLLSKMLLERNLIRVDSQKLELYLNLYANAD SISLNPTQLEAINMLFKLGYDHNLCPQILDVNDCLIPKEYKELRNQ >gi|197282991|gb|ABQU01000059.1| GENE 16 13006 - 14022 715 338 aa, chain - ## HITS:1 COG:HP1191 KEGG:ns NR:ns ## COG: HP1191 COG0859 # Protein_GI_number: 15645805 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Helicobacter pylori 26695 # 1 337 9 346 349 230 40.0 3e-60 MNILVRLPNWLGDAVMATFGLEILYQTYPNAHFYLIGSKVSCELFDHYPNTTTIVDTSKK ATFRIQALYKLAKEIPPCEIAITFQNNFLSALFLFFNGAKKRIGYANEMRSFLLTIHPKK YKNLHESLRFAKLIETIIPNHSIIPKLYLKPPTTQITLPPHFQNQKIAGINAGAAFGSAK RWKEEYFAEVIKDLLKQDFCIILFGVESENPINEKILSYLPKNEKILNLSGKTNIQSLMA YFLKLHFLLTNDSGPMHIAAALEIPTFALFGPTNQEETSPFNAKDSHILSLKTFHKSLPC QPCKKRICPLPKNSKDYHACMLNLTPSLVLPKIHSLIS >gi|197282991|gb|ABQU01000059.1| GENE 17 14019 - 15110 732 363 aa, chain - ## HITS:1 COG:MJ1607 KEGG:ns NR:ns ## COG: MJ1607 COG0438 # Protein_GI_number: 15669803 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Methanococcus jannaschii # 138 302 152 321 390 73 28.0 8e-13 MKTILFVRFKNTKVGGAENYLTLLRNTLRQKTQVFSSGDYGQDSQFKLTPPKFLPSFLRF IIFLRAYESLYQKNPNYLYFSLERVLHCDIYRAGDGIHRQWLSIKNHNFIQKIKSYFNPM NILYIYIEKRLFKNTKLIIANSKMIKTSLITMFNIPQEKIKVIYNGIQIPKTINKTLAKQ NLFMDFPFLTNKIIILFVGSGYARKGLKQALLMLSEIPHKNWHFIVIGKDKKIPLYAKLA KTLNIDKNVLFLGPKENIKRFYESSDIFLFPTIYEPCSNATLEAASYQNAIITTKQNGAG ELFLQDHILEHPNAITQGSKILQNLLENPTFLKTTQQKCADSVVHLTIENNLQNTLKAME DFL >gi|197282991|gb|ABQU01000059.1| GENE 18 15107 - 15598 271 163 aa, chain - ## HITS:1 COG:Cj0387 KEGG:ns NR:ns ## COG: Cj0387 COG0703 # Protein_GI_number: 15791754 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Campylobacter jejuni # 1 159 2 160 165 115 43.0 5e-26 MNSSNIVLIGFMGSGKSTIAKSLYHHTHSLILDSDQIIQNNENLTINEIFSQKGEQYFRN LEKEFCAFISKNIQHCIISTGGGMPIFCNVKQMGKVFFLDIDFENILSRLNDNEVSTRPL FQDKDKAFKLYLQRLQIYKDSAHFCINANADIPTITKEILNSL >gi|197282991|gb|ABQU01000059.1| GENE 19 15585 - 16295 710 236 aa, chain - ## HITS:1 COG:no KEGG:WS1496 NR:ns ## KEGG: WS1496 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 52 235 16 207 208 155 48.0 1e-36 MKILLPLLIPFFILYAQDSQTLPKIPDITIDTSTTPKEIPTPNENNDTKEIRNPFESVVT PKQSGQISNPPQLSLFTQTTLNLPSTARKIKKITLAYQNLDGSISTIEQELNGDIDWHFP LILSQEIKPEMQSQKLQDFNLGKIFDFHIDKQKITLKTPLNMIRDFTLASPTRLILDFKS NSKKVLQDFIQTNLPIISKVDLQTHLDFYRITFTLDGQYKYSIKNLKEKGLEIELF >gi|197282991|gb|ABQU01000059.1| GENE 20 16292 - 16546 225 84 aa, chain - ## HITS:1 COG:no KEGG:WS1495 NR:ns ## KEGG: WS1495 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 17 83 21 87 87 71 53.0 8e-12 MEKRQDLKYYEGGFYKLLPFFSLFLAICIAGIYFGNLFFGTNSLSVLFELQNKEEQISKE VKNLMNENAKLQKELFELKGLEPQ >gi|197282991|gb|ABQU01000059.1| GENE 21 16546 - 17817 1816 423 aa, chain - ## HITS:1 COG:jhp0142 KEGG:ns NR:ns ## COG: jhp0142 COG0148 # Protein_GI_number: 15611212 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Helicobacter pylori J99 # 1 423 1 424 426 595 70.0 1e-170 MVYIDEINAQEVLDSRGNPTIQASILLSDGNVGSAIVPSGASTGKREALELRDGDERYLG KGVLKACENVNSTIADALCGLSPFNQSLIDNTLIELDGTENFSNLGANAALGVSMAAARA AAKSLNIPLYRYLGGANALTLPTPMLNIINGGSHADNTVDFQEYMIMPVGFDTFSEAMRA SAEIYQHLKKILKDSKHITSIGDEGGFAPNLKTNEEPIQIILEAVKKAGYKEGEQIAIAL DVASSEFINDKGIYCLKGEGRELCSEELIEYYEKLISKYPIVSIEDGLSEDDWEGWKKLT QKLGNKIQLVGDDLFVTNAKILAQGIEKNIANAILIKPNQIGTVSQTMEAVRLAQRNNYR CIMSHRSGESEDSFIADFAVALNTGEIKTGSTARSERMAKYNRLLSIEKELIYPTYLGKS LFR >gi|197282991|gb|ABQU01000059.1| GENE 22 17831 - 18868 1240 345 aa, chain - ## HITS:1 COG:HP0153 KEGG:ns NR:ns ## COG: HP0153 COG0468 # Protein_GI_number: 15644782 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Helicobacter pylori 26695 # 1 345 1 345 347 544 82.0 1e-155 MALDENKQKAIELAIKQIDKAFGKGALIRLGDKPVEKIDSISTGSLGLDIALGIGGIPKG RIIEIYGPESSGKTTLALQIVAECQKKGGICAFIDAEHALDVTYAKRLGVDVENLLVSQP DFGEQALEILETLTRSGGVDLIIVDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKVT GIIHKMNTTVIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRIDVRRIATLKQGEQNI GNRVKAKVVKNKVAPPFRGAEFDIMFGEGISKEGELIDYGVKLDIVDKSGAWFSYEDKKL GQGKENAKIFLKENPQIAQEIEDKIKASISLTDDLSSSDDENLED >gi|197282991|gb|ABQU01000059.1| GENE 23 19134 - 19343 223 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309391|ref|ZP_04808546.1| ## NR: gi|242309391|ref|ZP_04808546.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 69 1 69 69 107 100.0 3e-22 MKILQKFFHFYYDGFRNMTLGKSLWVVIIVKLLIIFGFLKIYIYDNSLRAKFQTQEEKSE FVSKNLMEF >gi|197282991|gb|ABQU01000059.1| GENE 24 19353 - 20894 1384 513 aa, chain + ## HITS:1 COG:Cj0081 KEGG:ns NR:ns ## COG: Cj0081 COG1271 # Protein_GI_number: 15791471 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Campylobacter jejuni # 6 511 1 505 520 749 74.0 0 MEQELLQRAASVDWSRAQFALTALYHFLFVPLTLGLSFILAIMETIYIKTKKEEWKKITQ FWLGIFAVNFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEGIMAFFLEATFFAV MFFGWNKVSPKFHLLSTWLVAIGSNLSAFWILVANGWMQYPIGTTFNLESARNEMTSFFE VALSPVAISKFLHTVSSGYVISALVVVGISAWFILKGRDVIAAKKSLIVGASFGLITSIF LFVSGDESAYQVAQKQPMKLAAMEGIYEGEHRAGLVAFGILNPNKQIGDEQNTFLFDITI PYALSILGNRSPNSFVPGINDLVYGNAEKGIMSIEEKIQKGRLALESFKEYKNARELGIP ASDLQQYSQVVQENMPYFGYGYLKEAKEAVPPIALTFYTFHLMVALGSWFFVLFIMVLYL VMANDIVKFRKVLWIALWTIPLGYIAAECGWIVAEVGRQPWAIQDLMPVGVAATHLSSVN VQISFFIFLVLFTALLIAEIGIILKQIKKGFAH >gi|197282991|gb|ABQU01000059.1| GENE 25 20904 - 22028 1064 374 aa, chain + ## HITS:1 COG:Cj0082 KEGG:ns NR:ns ## COG: Cj0082 COG1294 # Protein_GI_number: 15791472 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Campylobacter jejuni # 1 374 1 374 374 442 70.0 1e-124 MFFGLDLIGLQIYWWGILSLLGGLLVFMFFVQGGQGMLFELAKNEEEKALIVNSLGRKWE LGFTTLVLFGGASFAAFPLFYSTSFGGAYWVWLIILFCFIVQAVSYEYRKKEGNFLGSRT YEVFLLINGILGVFLIGVALSTFFSGANFRLDSSNFVEWENASKGLEALLNPWNFLLGFA LVFLSRVLACGYFLNNIDDEIIKERVKRKIALNSVVFLVFFLGFLFWIFTKEGFFVSQDG LVSMQKFLYFQNFLEMPFLIVILLVGVVCVLLGMYMGFKGCKKAIFALGIGSVLTVFAIL LSIGIGKSAFYPSLVDLQDSLTIYNASSSYYTLSVMGYVSLLVPFVLAYIVYVWNLMDRV KITRDELREDSHQY >gi|197282991|gb|ABQU01000059.1| GENE 26 22039 - 22146 86 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTEFLLIMWPVVIYIAYKFVWLNINHIEKDDRSQN >gi|197282991|gb|ABQU01000059.1| GENE 27 22335 - 22778 395 147 aa, chain + ## HITS:1 COG:HP0602 KEGG:ns NR:ns ## COG: HP0602 COG2231 # Protein_GI_number: 15645227 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein related to Endonuclease III # Organism: Helicobacter pylori 26695 # 1 144 69 212 218 135 47.0 3e-32 MHSLADISAENLQAFMKDLGFFRQKSQRIIMLCNNILSDFGDFENFCAKASREWLLSQKG IGNETCDSILCYGALREEMVADNYTYKLLKSYGYELEGYDELKEWLVCGLLENYSKVCEI YGYEIPINELYARFHGKIVEFCKEHRV >gi|197282991|gb|ABQU01000059.1| GENE 28 22790 - 24091 1325 433 aa, chain + ## HITS:1 COG:Cj0980 KEGG:ns NR:ns ## COG: Cj0980 COG2195 # Protein_GI_number: 15792307 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Campylobacter jejuni # 9 430 5 419 422 260 37.0 4e-69 MEGNLFEPLELFLEICKIPHPSNHGIELKKWLIQKAREFGAEVQEDSAGNLLCIKGKPKV CLQGHYDMVYVGDSKEFAIKPIIENGYISAEDSSLGADNGAALACMLLALRDFENIECLL TSDEEVGMIGANTLGLEIQAPFVINCDSEDINEVIFSCAGGYDLEAKKEFASQEIPQDYV SYEIKSKNFQGGHSGIEIHKNIPNAILELAKIAKDLEGIVVEFFGGEKRNSIPTNAILKI AFEKEKMNILEMLDKEHFTITPLESMKSGYRSGELIEAILGLANGVIQSDKNGVILSSNL GILRQEKGFFSLALMGRGNQEQRMQEGIQTNKKWLESLGFCVAVADYYAPWEREEGELVK LVFQIYQKYNQNTELKSIHAGLECGILKQKFPAKEFISIGPTILHPHSLKERMDLESFKK FWTILKEILQTKQ >gi|197282991|gb|ABQU01000059.1| GENE 29 24156 - 25016 853 286 aa, chain + ## HITS:1 COG:jhp0604 KEGG:ns NR:ns ## COG: jhp0604 COG0760 # Protein_GI_number: 15611671 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Helicobacter pylori J99 # 28 284 157 412 413 125 30.0 8e-29 MKKCCFAIKKSVLIGILLSSFAFGAPSMVNGIAFFVNGNPVTLLEVYKVQQRDKVNQNIA VDILINEKLHEEEIKKHKIVATELEINDEINRIARQNQATAAQVESYIRSNGGNWENYKE EIKKGILKKKLYQVIAQESLKMVDENELLNYYNAHKEEFSIPQSIDVTKFFSKDGKALEA LIQSNGKEVQKGVQSENEVLQTAALNPQIVAAFTQGKIGTFTPIYPIGDDFVVFLIKAKN NPAILPFENVRNVVLQKIMGQKEDYLIYEYFEKLRSNAKVNIIRLN >gi|197282991|gb|ABQU01000059.1| GENE 30 25033 - 25482 413 149 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309397|ref|ZP_04808552.1| ## NR: gi|242309397|ref|ZP_04808552.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 149 1 149 149 272 100.0 5e-72 MKKIVMGILGFVMFFVGCADKNTDIQSSTTKENIEKVLLSKEKWKIHSYKINGATKVLAF DKENEFFIGFKDEQVFGVAGCNNFFGAYEIKGNEIKFANVGMTRKMCEPKMMEIESDLTQ NLLNNTNRLEILEDGKILVFSEKFYLLVQ >gi|197282991|gb|ABQU01000059.1| GENE 31 25538 - 26347 541 269 aa, chain + ## HITS:1 COG:jhp0771 KEGG:ns NR:ns ## COG: jhp0771 COG0421 # Protein_GI_number: 15611838 # Func_class: E Amino acid transport and metabolism # Function: Spermidine synthase # Organism: Helicobacter pylori J99 # 1 259 1 254 262 173 37.0 3e-43 MWITKNYSGKIQQEYKIESKLLEIKGIRHNLEIFNSKTFESIALIDEQIFLKTMLALQSE LLAHICACSHQEPKRVLIADNFNLELAFEFLRYSELKVDFLQFDLKILESLISFFPHYQE VMKNANFKLIPQQQEEFLEQNEQRASLYDIIIATDESQFHCYKKLLSEDGILVLKIPHLL LDISKTKEILESLGEEFRIKMPFYIPMSLDMQDFYIFASKKYHPTADIILQRADMLEDLE YYNANLHLSAFVLPQKVKKHYLGLLVIEL >gi|197282991|gb|ABQU01000059.1| GENE 32 26337 - 26933 403 198 aa, chain + ## HITS:1 COG:jhp0770 KEGG:ns NR:ns ## COG: jhp0770 COG0237 # Protein_GI_number: 15611837 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Helicobacter pylori J99 # 1 193 1 196 196 163 44.0 2e-40 MSFRYAVALTGGIGSGKSTTSSLLRLYGYNVICADEISHQMLEKCKEEILISFGKGVLEN GEVSRKRLGEIVFKDKEKRKTLEDILHPKIKEEITRQARELDKQEIPYFIDIPLFFETKN YPIKEVLLIFVPKEIQLQRLIKRNHLTAQEADERISLQIPMEEKKKKANYIIDNSKDLEN LQREVEKYLQNYLSKLDF >gi|197282991|gb|ABQU01000059.1| GENE 33 27323 - 27442 166 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYCADSGFKIAVCGAPGSIGDEVMAVCYLVSNFFIQTLI >gi|197282991|gb|ABQU01000059.1| GENE 34 27463 - 28374 587 303 aa, chain + ## HITS:1 COG:no KEGG:C8J_1427 NR:ns ## KEGG: C8J_1427 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_81116 # Pathway: not_defined # 103 303 127 325 325 126 34.0 9e-28 MPFSLFKNIQFIDRIFNVQKDSSAFLEEFDVLLFVFKHDMEDRIQIARKFKATKILMLFS QYLLKTKGFSYLFDSAYTRGGEIIRIINPYWKQDKNRVILGALRLVRALNKKHYDKNIQK IPLSKAKIITSRENKVFVDLKMQRLGANSYDKIIGISPFGKSASRGNANFSIEEWVKITK FLAKKYQNYFFVLMNYEGNPIEIEGLSEINSGIFVNNKDLLNLVELIGRLDLLLSVDTSN VHIADNLQIPTLEIIRQSEAKKWGGGSYGGVCEQIILPKEWKSNSKYYQNLFIQKSQELL EAL >gi|197282991|gb|ABQU01000059.1| GENE 35 28523 - 28936 456 137 aa, chain + ## HITS:1 COG:no KEGG:HH1059 NR:ns ## KEGG: HH1059 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 130 1 130 130 150 66.0 1e-35 MLLNPDLAKLLLRLCVGGLMLFHGIFKITHGADVYVGMLESKGLPGLMAYGVYIGEVLAP LLIILGYQVRISALIVAFTMFMAIYLVYGFEIFALDSYGGWVIEHQLLYILPCLALFFMG GGKYALFGKKVQGSAKD >gi|197282991|gb|ABQU01000059.1| GENE 36 28954 - 29595 551 213 aa, chain - ## HITS:1 COG:VCA0447 KEGG:ns NR:ns ## COG: VCA0447 COG0863 # Protein_GI_number: 15601210 # Func_class: L Replication, recombination and repair # Function: DNA modification methylase # Organism: Vibrio cholerae # 8 210 20 218 230 70 27.0 2e-12 MKNTKLTIDGLTLLKSLESASIDLCFFDPQYRGVLDKMRYGNEGERQKGRSALIQMSEES IKSFIIEINRVLKPSCYLMLWIDKFHLCEGVGAWLDSTLLQIVDLITWDKGKMGMGYRTR KQSEYLLVIQKKPIKAKGTWKLHTIRDVCHEPLSKEELKAHPHSKPKKLQKMLIESCTNK GDLVCDPAAGSFSVFECCKELERDFIGTNLKGL >gi|197282991|gb|ABQU01000059.1| GENE 37 29629 - 30978 1138 449 aa, chain - ## HITS:1 COG:Cj0023 KEGG:ns NR:ns ## COG: Cj0023 COG0015 # Protein_GI_number: 15791422 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Campylobacter jejuni # 1 447 1 441 442 669 74.0 0 MVERYAREKMKKLWDMEAKYSAWLEVEKALVRGWNKLGLIPDSDCEKICKNAKFDVQRID EIEAVTKHDLIAFTTSVAESLGEESRWFHYGITSSDTIDTAVALQMRDSLKIIIDDVKEL REAIKRRAYEHKDTLMVGRSHGIHGEPITFGLVCAIWYDEMTRHLRSLESTLEVISAGKI SGAMGNLAHTPIELEELVCADLGLQAAPASNQVIQRDRYARLISDLALLASSCEKIAVEI RHLQRTEVYEAEEYFSEGQKGSSAMPHKRNPVLSENITGLCRVIRSFALPAMENVALWHE RDISHSSVERFILPDSFITTDFMLARLTGLIDKLVVYPKNMLKNLNLTGGLVFSQRILLE LPKCGVSREDAYKIVQRNAMKVWESLQEGQAVVNERGESLYLQYLLDDSELVGLLSKGGD SGEAIIRECFDYSYYTKNVDSIFKRVFGA >gi|197282991|gb|ABQU01000059.1| GENE 38 31045 - 31986 681 313 aa, chain + ## HITS:1 COG:Cj0022c KEGG:ns NR:ns ## COG: Cj0022c COG0564 # Protein_GI_number: 15791421 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Campylobacter jejuni # 15 302 14 283 300 174 40.0 2e-43 MPFIKKKFYIKEPIKAYLFLMRELGLDMAKAQSFINKGRIFYGNKTLGNNEKNKILEKEV EILLFVPQSKGLKPLFENEDLAIFDKPAKMLIHPKGRFAHHSLIDEVREACGQESTLIHR IDKETSGLVLVGKHKRSIQELGELFAKKKIKKEYLALVRGEMRGGDFCLSLPLAMQKKGG DLSVRSIYWGQILKAQSLNFKAAKSEFEILGYINGNTLLKVYPITGRTHQIRIHLFALGF PILGDPLYGCEDWQSREYLDSEFISKNDSLGLCEEKRIEYFGAERLMLHAYSLEFFYGGR EYHFRTIQRFGIK >gi|197282991|gb|ABQU01000059.1| GENE 39 32034 - 32324 139 96 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309405|ref|ZP_04808560.1| ## NR: gi|242309405|ref|ZP_04808560.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 96 1 96 96 181 100.0 1e-44 MLIVLQQHIHKDIFQVKKIDSLEEAKAIQLKEFADSDTNSRNEAVSKLVEHVQEVTSNIN QFGLDYLTARRVINCSTLGRMCLKGSYPTEYRKFFQ >gi|197282991|gb|ABQU01000059.1| GENE 40 32548 - 33513 1148 321 aa, chain - ## HITS:1 COG:jhp0150 KEGG:ns NR:ns ## COG: jhp0150 COG0113 # Protein_GI_number: 15611220 # Func_class: H Coenzyme transport and metabolism # Function: Delta-aminolevulinic acid dehydratase # Organism: Helicobacter pylori J99 # 1 321 1 320 323 436 68.0 1e-122 MFKRLRRMRLNPNIREMLTETTLSKKDLIYPLFITHGSGVKNPIESMPEVYQLSIDEALK ECEVLQKLGIFSILLFGIPKIKDSVGSEALSQEGIIAQATRAIKEKFPDLLVCVDLCFCE YTDHGHCGILSPKLNSVDNDLTLEILNKQALILAQNGADIIAPSAMMDGMIISLRQALDS NGFEHIPLMSYSTKFASGYYGPFRDVAQSTPSFGDRKSYQQNPANRREAILESLEDEAQG ADILMVKPALAYLDIIRDIRERTLLPLAAYNVSGEYAMLKFAQKANLIDYERVLLETMLG FKRAGADIIITYHTKEIAKLI >gi|197282991|gb|ABQU01000059.1| GENE 41 33506 - 34756 905 416 aa, chain - ## HITS:1 COG:jhp0151 KEGG:ns NR:ns ## COG: jhp0151 COG0642 # Protein_GI_number: 15611221 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Helicobacter pylori J99 # 2 406 1 406 442 273 38.0 4e-73 MIKNSIIVKITILFLIAIIGLSAFSYYFIREEIDRKNYENQLKYTQFLATINQLVRFGGN ITLIEKYLNELGLVQIKNTEILDLFEAHITPNFNHGVIAKIIKEEGGIYLFLQTPQDWRV YGDIHFDRLFNYYIITFIAFVIVVFLFVLVIRSILPLKTLQKEIRKFANGQMDISCKINQ NDEIGELAQEFDNAVQKINALNQSRHLFLRSIMHELKTPITKGRITAEMIDNPLYKERLC SVFERLNSLINEFAKIEELSSRNYCPNKQKILLQDVLKRVFEMLLLDEEQITSLFILPQN QQSLYADFEMISLVIKNLVDNAIKYKTQGQIEICIAKKDLWIKNYGNPLPYTLKDHSKPF FKDSKSNTSGLGLGIYIIKSTLETQGLELDYFHQNNQNIFIIKGVVSQKNLKDENV >gi|197282991|gb|ABQU01000059.1| GENE 42 34749 - 35435 933 228 aa, chain - ## HITS:1 COG:HP0166 KEGG:ns NR:ns ## COG: HP0166 COG0745 # Protein_GI_number: 15644795 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Helicobacter pylori 26695 # 1 223 1 224 225 254 65.0 1e-67 MLEILMIEDDLELATILSEYLKAHDINVTNYDEPYTGMSAINTRHFDLLLLDLTLPNLDG LEVCKKVAKEKHIPIIISSARSDVEDRVLALEYGADDYIPKPYDPKELVARIHSVLRRYN SINKPNETEISIFPFRLDKGSREIYLYDELLDLTKAEYEILSFMLENKNQALTRDAIATH SDSINPDSSNKSIDVIVGRLRSKIEKNGKKYIFSVRGIGYKFQIKDND >gi|197282991|gb|ABQU01000059.1| GENE 43 35671 - 36090 456 139 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309410|ref|ZP_04808565.1| ## NR: gi|242309410|ref|ZP_04808565.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] # 1 139 1 139 139 182 100.0 6e-45 MELKEAILQTLAEIDASQTQTNLPNQINSPQQEAKQEREALLDILPTEENLHKNSLDSQN PYERKIEKLDLKNTEELKQILIKQYKEEERFLNAMQERILVLFEGLQSPNNRNIEDKVDM ILNFLEFTLAIIDEKKNQK >gi|197282991|gb|ABQU01000059.1| GENE 44 36081 - 36329 363 82 aa, chain - ## HITS:1 COG:no KEGG:WS1814 NR:ns ## KEGG: WS1814 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 82 4 85 85 97 64.0 1e-19 MKTLTLASIYEIQGHRHEAAEIYKTILQENPENIEAKIALKRLTSNRKNYGKANEEMLNF FISMDSQIEYNEFERWLLKLWN >gi|197282991|gb|ABQU01000059.1| GENE 45 36426 - 37934 1299 502 aa, chain - ## HITS:1 COG:aq_1787 KEGG:ns NR:ns ## COG: aq_1787 COG0134 # Protein_GI_number: 15606843 # Func_class: E Amino acid transport and metabolism # Function: Indole-3-glycerol phosphate synthase # Organism: Aquifex aeolicus # 37 253 49 254 257 125 40.0 2e-28 MIPTILKNILDKKAKHPILKATRDTPLTPPNLDFPIIIAEIKRASPSAGNIGKIENPKDL ANSYLKGGASAISILCEEDFFKGSLEDLHQVKQSYPNATILRKDFITKIEQIQESYDFGA DMVLLIAAVFIGENNENGGFSRLKSLYEESLRLGLTPLIEVHNQAEIDFITPLKAMLIGI NSRNLHTFKINKIQAYNLLKYLKTTNPQSKTIFESSIECSFDGFVIGNIGFDGILCGSYL VRDSNPTQTLKSLKDSMICGKNSPNAFYSNAFELLNSPQGFLKICGITSKEDALMCANTL KSTLQNHTHNYSSPKKLAALGFILAKDSPRFITPQAIEEISNALESHPKILKIGVVKEDE KMLQQAINLYKKGIIDALQLHGVKQQNFAKIDLKNADFSFYEVWNIAESEDLGDFISPFV LLDSKSQLGGGSGKSIKLEVLKSLKEKVNDYLCVAGGICADNVIPLRNIGAKMLDINSSI ESKIGKKNSQKLQTLLHLYFSS >gi|197282991|gb|ABQU01000059.1| GENE 46 37931 - 39553 1496 540 aa, chain - ## HITS:1 COG:MJ0234 KEGG:ns NR:ns ## COG: MJ0234 COG0547 # Protein_GI_number: 15668409 # Func_class: E Amino acid transport and metabolism # Function: Anthranilate phosphoribosyltransferase # Organism: Methanococcus jannaschii # 198 528 6 329 336 236 39.0 9e-62 MIILIDNYDSFTYNIYQAFSQFNYPIKVLRNDKTTLKEIESLNPSYIIIGPGPKSPKEAG ISIEIVQKFKGIYPILGICLGHQAILSAFGVEIKNAKNIVHGKVEPLIHNGKGIFRHISP KTPIARYHSLVGKKEEIPECFLISGMSEDGEVMAVEHKQYHLVGLQFHPESIGTKEGIKM LLNFLHYTREPIPTKDYLKKVLHQKSLNFQESYNLMDELTEGNLSDAQIGSILTSLEIKG IDEYELAGFASVLKKKAVKIDLKDSLTIRFDMVGTGGSNAKTFNVSTTSALLLASQAKKN NFGIIKHGNKAITSKSGSADLLNALGINVNMDFENIKQIYKNLHITFLFAQKFHSAMRFA ANARSSLGFKTAFNLIGPLSNPSPITHQLIGVFDKSYTEIMAKALAILGVKRAMVVSGLD GYDEISLCAPTQITELHNGDIKTYIFNPIEVGLDFVHHSLLQGGDSQENLQITLDIFNAK PSPKLDLVALNMGAALYLCNQAQSIQDGFFRAKEIIQSKEVFETLESFKTLSHQHLQGLQ >gi|197282991|gb|ABQU01000059.1| GENE 47 39575 - 41044 1386 489 aa, chain - ## HITS:1 COG:NMB1021 KEGG:ns NR:ns ## COG: NMB1021 COG0147 # Protein_GI_number: 15676909 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Neisseria meningitidis MC58 # 44 481 46 481 491 280 39.0 3e-75 MREFMFKFLNPKQKGYPASLEFRKIPASKITPLILCESFNAPVLLESAFLKTGKGRFSIL ILKEAFRVTQENQKISLIHEDFNHTLKDSQNFLQILETLRNLAPTPQNLPQDLPLPLGGV GYLGYEFFSQIESIQFKNPSLYDCYDNAFIFGRDFAIFDHFYESLYLISVTYQDECESHN LNQRLERIIQKLENLQPAQESSKNYTSEIISKDKQSYYTHMVTTLKEEIYKGNLLQCVPS QSMQIKSNLPPLKAYMNLRTNNPSPYMYYYNFGHFQIIGSSPEVLIKLESLDEKTAKLTL RPIAGTRKRGMNEIEDSRLEEELIHNEKENAEHLMLLDLGRNDIGKVAIGGSVKVTQEKV IEKYAKVMHLVSEVEGIMDLQTHKKDDALLAAFPAGTVSGAPKIQAIKTIESLEEHKRGI YAGAIGYFTQSGDMNFAIAIRTAIYQNGIYYLQAGAGIVYDSIPKEEYLETKNKMLSLVE AIMGENNAK >gi|197282991|gb|ABQU01000059.1| GENE 48 41103 - 42419 1301 438 aa, chain + ## HITS:1 COG:MJ1037 KEGG:ns NR:ns ## COG: MJ1037 COG0133 # Protein_GI_number: 15669226 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase beta chain # Organism: Methanococcus jannaschii # 41 423 21 403 404 426 57.0 1e-119 MITWGIMLKILAHKEVVMKKKIFVESKKGFFGKETKHTHSFGGQYVPEILYPALDELEKA YYSILDSNEFKSEFKRLLAEFVGRPTPLIYAKNVSKILGNEIYLKFEGLANTGAHKINNA IGQVLLAKKMGKKRIIAETGAGQHGLAVSAACAKLGLECVIFMGSRDVKRQFPNVFNMEL LGAKVVSVESGSQTLKDAVNEALREWSKDCKNTFYVLGSALGPYPYPDIVREFQSVISKE LKKQTQKFFKGNPDIMVACVGGGSNAMGFFSHYLKDEEVHLVGIEAGGKGSRIGENAIRM GNKEAHLGIAQGYKSYFLSDEYGNLLETYSISAGLDYAGIGPQLAHLKEIGRVEFDSSSD DEALEALKFFAKNEGIIAALESSHALSGALKIAKKVKNKKIIINVSGRGDKDIFITAKAL QKDRWCEFLQNEIVEMKG >gi|197282991|gb|ABQU01000059.1| GENE 49 42435 - 43193 265 252 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149002101|ref|ZP_01827055.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae SP14-BS69] # 14 230 33 242 258 106 31 2e-22 MQLMGHIVAGFPSLEGSLEAALGIAEGGAEYLEVQFPFSDPNADGVAIADACEESLQKGF NTDLGFEFLVQLKRAFVDRNLSTKILIMTYGNILFAYGIERFLKRAKECGVFGLIVPDLS LQNDENLFGLSKQYGLENIALIAPYTNSKRMEKLDKATGSFIYVVARNGITGNETQIDSR LLEYIAKVKKHTTKPIALGFGIQSREQIDTLRGIVPIVIVGSAFVRMIAQSVKEGKDLQE SLSAFTKELLGK >gi|197282991|gb|ABQU01000059.1| GENE 50 43446 - 44117 620 223 aa, chain - ## HITS:1 COG:jhp0986 KEGG:ns NR:ns ## COG: jhp0986 COG0325 # Protein_GI_number: 15612051 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Helicobacter pylori J99 # 1 223 1 221 222 231 56.0 7e-61 MNRFQENLINAIDKIEKARISVDRHRIIRLVAVSKYVSHQEIQALYECGQRAFGENKVQD LSYKSQTLESLPLEWHFIGNLQSNKINALLKLKPFMFHSLHSLSLANELQKRLERENLTL KTLLQINSAKETTKSGFDPESAYESYLQIQETCPNIKLCGLMSIGAHTQDTKIIQNSFEL TSKIYEKLQKNGANILSMGMSGDFELAIKCGSNCVRLGSTLFK >gi|197282991|gb|ABQU01000059.1| GENE 51 44127 - 45197 1056 356 aa, chain - ## HITS:1 COG:Cj1068 KEGG:ns NR:ns ## COG: Cj1068 COG0750 # Protein_GI_number: 15792393 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Campylobacter jejuni # 3 350 22 366 368 265 44.0 9e-71 MGLIGSILVLAFLVFFHELGHFLAAKFFGVKVEAFSIGFGSQKLWKKQIGETEYSLRPIP LGGFVQLKGQSDIDPKNRNYDNDSLYGIAGYKRLIILAAGSFFNLLLAFLLYIAIALIGQ NELAPVIGKVQENSPASLANLKAGDEITSINGKNIRTWNALNETIAASQGSLEITFLRDN QEHTTTLTPKIGTSKNLFGETITRPLIGIVSANELRIISYSLTESIPYAFFQTLQAGTLI LQGLEKMIMGVVPLSEVGGVVSIVSITKKATELGIVTLFTFTALISVNLGILNLLPIPAL DGGHIVFTLYEMITKKIPSLNTLYRLTVAGWVFLFGLMGLGLYNDMIRIMNGTMPF >gi|197282991|gb|ABQU01000059.1| GENE 52 45214 - 45759 270 181 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 1 173 476 661 904 108 37 6e-23 VMNLKTLPNILTTLRIGFAFLLLAILLYGRDWLPDSIHPTWINYLACLIFCLASITDFFD GFIARNFQVTSVFGEIFDPLADKLLMLSAFIGLLILNRADAWAVFLILGREFFITGLRVI AASKGLKVAASNLGKYKTGLQITAIAFLLMDYSFANATLWLAVIITLYSGYDYAKAYTKT R >gi|197282991|gb|ABQU01000059.1| GENE 53 45756 - 46538 968 260 aa, chain - ## HITS:1 COG:jhp0409 KEGG:ns NR:ns ## COG: jhp0409 COG1028 # Protein_GI_number: 15611477 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Helicobacter pylori J99 # 4 260 6 262 262 437 85.0 1e-122 MIENFKGKTLVISGATRGIGKAILYRFAQNGVNIAFTYNKNEEEAQKIIADVETKYKIKA KAYPLNVLEPETYKELFAKIDEDFERVDFFISNAIIYGKSVVGGFAPFMRLKPKGLNNIY TATVLAFVVGAQEAAKRMQKIGGGSIITLSSTGNLVYMPNYAGHGNSKNAVETMVKYAAM ELGEYNIRVNAVSGGPIDTDALKAFPDYAEVKAKVEEQSPLNRMGKPEDIAGACLFLCDE NASAWLTGQTIVIDGGTSFK >gi|197282991|gb|ABQU01000059.1| GENE 54 46535 - 47449 1109 304 aa, chain - ## HITS:1 COG:Cj0806 KEGG:ns NR:ns ## COG: Cj0806 COG0329 # Protein_GI_number: 15792144 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Campylobacter jejuni # 4 302 3 295 298 365 59.0 1e-101 MQTKEQIIGAMTALITPFKNNKLDLETYEKLIQRQINNGIDVIVPVGTTGESATLSHQEH KECIEVALSVAKKNKLDGKNIKVLAGAGSNSTQEAIELAKFAENTGADGILCVTPYYNKP TQEGLYQHYKSVANAISIPLMLYNVPGRTGVNLENHTILRLFNEVQNIYAIKEASGNLEK IIDLNAKAKNLIITSGDDVINYPVLCCGGMGVISVTSNLLPNKVAELTHSILLESNYQKA HNLSNELYAINKALFIESNPIPIKAAMYLSGLLHTLEYRLPLVPPSAENLKILENILTKY EVVK >gi|197282991|gb|ABQU01000059.1| GENE 55 47456 - 48715 1258 419 aa, chain - ## HITS:1 COG:Cj0805 KEGG:ns NR:ns ## COG: Cj0805 COG0612 # Protein_GI_number: 15792143 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Campylobacter jejuni # 15 419 9 412 416 496 60.0 1e-140 MAQESVLPKHYQTTLKNGLEVFIIPLKNQSNVITTDIFYKVGSRNETMGKSGIAHMLEHL NFKSTKNLKAGEFDKIVKSFGGGTNASTSFDYTHYYIKSSSQNLGKSLKLFAELMQNLKL NDEEFQPERNVVAEERLWRTDNNPMGYLYFRLFNTAYVYHPYHWTPIGFMEDIRNWSIED IREFHKTYYQPKNASIVIAGDINEKEALKEVKKYFESIPNTNLEIPKLHTIEPKQDGLRQ TNIHKQTEVEILALAYKIPPFNHKDQIALSALSEILSGGKSSILSSVLVDKKRLAAEVYA YNMDLIDEGVFIIMALANSNISLDKIQKEILAQIESIKQGKLKQSELDKVKTNMRANFLY ELESSSGVANLFGSYIARGDLQTLLDFEKNFEALKIQDIIEVANKYFNLNNATIATLQK >gi|197282991|gb|ABQU01000059.1| GENE 56 48763 - 49818 989 351 aa, chain - ## HITS:1 COG:Cj0804 KEGG:ns NR:ns ## COG: Cj0804 COG0167 # Protein_GI_number: 15792142 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Campylobacter jejuni # 3 351 2 351 352 368 53.0 1e-102 MFSYQSIRPYLFKSDPEKAHHFIEICAKLAPKIPGILPLLSQKTCIDNPILAQKIDGMDF YNPIGLAAGFDKNATMIHALSALGFSHLELGAATPNPQSGNEKPRLWRHIQEESIQNAMG FNNDGADTIANRLEKLYPFAIPLGLNIGKNKTTPQEKALEDYLSLAKSFANCTDYLSVNI SSPNTPNLRDLQNKSFIQELFLELCKIYQKPIYLKIAPDLSIDSILKLTEVAINNGAKGI IATNTTLDYSLLPNPKEKGGLSGKVLAQKSKEILKEIAKVYAKKTTIISVGGIATPQDVF ERITLGANLVQIYTSLIFEGPMLIKKLNEGLVQILEDHHFVNIQDAIGINL >gi|197282991|gb|ABQU01000059.1| GENE 57 49811 - 49900 63 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIILSESLKIYLNKNATITESILIRGNNV >gi|197282991|gb|ABQU01000059.1| GENE 58 50175 - 50630 201 151 aa, chain + ## HITS:1 COG:no KEGG:CJE1603 NR:ns ## KEGG: CJE1603 # Name: not_defined # Def: capsular polysaccharide biosynthesis protein, putative # Organism: C.jejuni_RM1221 # Pathway: not_defined # 3 148 490 643 650 94 35.0 1e-18 MCDISNFKEEVSKLQCKELQRIYLEFQKSLDKIQNKKPIGAVKRVKNHLCYKFGIAIVFN AKDTIGFLILPVVLYNIFRTHRFYQEISVGKKFKLEEYEDYQESLLYKQSLCYKIGEAFI KSHKQWYKGGYLWFWVRYWRLKKRFYEKLIN >gi|197282991|gb|ABQU01000059.1| GENE 59 50699 - 53257 1603 852 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 846 5 806 815 622 41 1e-177 KLTNTMQETLEQGASLALHNQNQEIEPIHLFWAMLTNTNSLLNQALNRLNIDKTALELEA KSLANNLPKSSSLSKETLKISRNLSNALNQADGLATSNGDSYIAIDTFILANLNDEIIKN LFGKYLDISELKKTFEAMRGGAKIDSQSGDENLESLEKFGVDLTQKALEGKLDPVIGRDE EINHMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIIKKEVPISLQNKKVIALDMSAL IAGAKYRGEFEDRLKKVIDEVTKAKNIILFIDEIHTIVGAGASEGSMDAANILKPALARG ELHTIGATTLKEYRKYFEKDAALQRRFQPVPVNEPSVNEALQILRGIKERLEAHHNVTIT DSALVAAAKLSNRYITDRFLPDKAIDLIDEAAAELKMQIESEPSELAKVKREIESLQVEK EALLMEKSEKNNARIQEIQKELSDKNETKKTLEAQFENEKQVFNEIANIKIQIDSLRTES TLAKRNSDFNKAAEIDYGKIPELEKSLEEQNQKWEKMQEAGTLLRNAVLPESIAAVVSRW TQIPIKKMLQDEKDRILGIEEELKKDVIGQDKALHAIARAIKRNKAGLSELNRPIGSFLF LGPTGVGKTESAKTLARFLFDSEKNLIRIDMSEYMEKHAASRLVGAPPGYVGYEEGGQLT EAVRRKPYSVVLFDEIEKAHPDVFNMLLQVLDDGRLTDNKGVTIDFRNTIIILTSNIASD KIMELKDEDAKEKAVKEALKAYFKPEFLNRLDDIVIFNPLGIKQITHIVDILFRNIQKKV LERDIQIELEQSAKELIAKVGFDPTFGARPLKRALYEEVEDRLADLILQGEIKEGSKVTF YAENEEIKTKIS Prediction of potential genes in microbial genomes Time: Tue May 24 02:39:24 2011 Seq name: gi|197282990|gb|ABQU01000060.1| Helicobacter pullorum MIT 98-5489 cont2.60, whole genome shotgun sequence Length of sequence - 7810 bp Number of predicted genes - 9, with homology - 8 Number of transcription units - 5, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 345 - 404 4.6 1 1 Tu 1 . + CDS 437 - 925 404 ## COG0225 Peptide methionine sulfoxide reductase - Term 769 - 816 1.9 2 2 Op 1 . - CDS 955 - 1164 179 ## gi|242309428|ref|ZP_04808583.1| predicted protein 3 2 Op 2 . - CDS 1178 - 1279 65 ## + Prom 1187 - 1246 5.9 4 3 Op 1 . + CDS 1437 - 1799 424 ## gi|242309429|ref|ZP_04808584.1| predicted protein 5 3 Op 2 40/0.000 + CDS 1800 - 2468 796 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 6 3 Op 3 . + CDS 2461 - 3702 947 ## COG0642 Signal transduction histidine kinase 7 3 Op 4 . + CDS 3702 - 4628 826 ## COG0248 Exopolyphosphatase 8 4 Tu 1 . + CDS 5025 - 6536 2031 ## COG1344 Flagellin and related hook-associated proteins + Term 6552 - 6595 6.1 + Prom 6606 - 6665 8.1 9 5 Tu 1 . + CDS 6788 - 7808 776 ## COG1896 Predicted hydrolases of HD superfamily Predicted protein(s) >gi|197282990|gb|ABQU01000060.1| GENE 1 437 - 925 404 162 aa, chain + ## HITS:1 COG:NMB0044_2 KEGG:ns NR:ns ## COG: NMB0044_2 COG0225 # Protein_GI_number: 15675984 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Neisseria meningitidis MC58 # 3 160 3 160 181 171 53.0 5e-43 MQQVIYLAGGCFWGIQGYFDLVRGVVDSEVGYANSKIENPSYELVCSGITGAVEAVKIVY ESDILSLREILERFFEIVNPFSLNYQANDFGTQYRSGIYALDSKILQEVAKFVENLQKSL PQKIVTEILELENFYPAESYHQKYLAKNPNGYCHIDLSKALR >gi|197282990|gb|ABQU01000060.1| GENE 2 955 - 1164 179 69 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309428|ref|ZP_04808583.1| ## NR: gi|242309428|ref|ZP_04808583.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 69 1 69 69 75 100.0 1e-12 METLLTILCIIAVIPFAMFALVSPITWYVLAIIGVIALFVYFTEAMLVLIFIVASFTLLG AFYRWLFKY >gi|197282990|gb|ABQU01000060.1| GENE 3 1178 - 1279 65 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKTKYPKNRQALTNFNFTALNHYEIKYAIKKAN >gi|197282990|gb|ABQU01000060.1| GENE 4 1437 - 1799 424 120 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309429|ref|ZP_04808584.1| ## NR: gi|242309429|ref|ZP_04808584.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 120 1 120 120 202 100.0 7e-51 MRFLVVFLLIFGINLGAKNIEEGLKFLEIPNAKKEVLREAMIEFYKQRQNYHKNNEIVEY GILSEIAKNGYGSVNFVEYQRKLENIYQDYIHAKITFYRSIGQILDEQEIVNLMEFIGED >gi|197282990|gb|ABQU01000060.1| GENE 5 1800 - 2468 796 222 aa, chain + ## HITS:1 COG:BH1944 KEGG:ns NR:ns ## COG: BH1944 COG0745 # Protein_GI_number: 15614507 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 2 220 5 225 229 164 39.0 8e-41 MYKILIVEDDLDMQKLLVDYLKKSGMEAVATDSPKEALEMLKSKQNFHLAVLDIMLPEMD GLELCKKMREISDLPIIMSSARGDIGSKILGFERGADDYLAKSYEPIELVARINALLKRY SANQVLRCGELEVDSNKRKVTLDGYSIDLTPAEFEILNLLISNKGKPYSRESLSQAISSI APDSSLRSIDTHIRNLRAKLGDDAKEPKYIQSVWGIGYKFCD >gi|197282990|gb|ABQU01000060.1| GENE 6 2461 - 3702 947 413 aa, chain + ## HITS:1 COG:Cj1262 KEGG:ns NR:ns ## COG: Cj1262 COG0642 # Protein_GI_number: 15792586 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Campylobacter jejuni # 9 410 6 406 411 120 26.0 5e-27 MIKKWLYPSLFVQIYLLFFVSIVISAIITYSLNISSLREKEEKIISQTTFLAQQSMLELI NGNIRRIQTLIKNYGFVRVDKIPKEAVVIYKSSDSLAKMQIFKIHQDYGFGLEYLGESYI AQKNFKEQLSFGNNLNWWILLDFLILFLTFAIILAILHPMKILRNSLEEFSKGNYKVRIK VPKEPEQALLARSFNAMAIKISKLMEVREFILRNIGHELKTPISKAKLALELMPPNPQKE ILNKAIKNLDELTSQILTFEKVQEGKDLLEFKEFFVETLVFETLNHIFVDEAELEIQIQE NFKIFGDLNFLSIALKNLIENARKYKSGGKIEVFTQRWDKERFCLGVSNEGERLQKNIQE YFEPFYRDKKHELTQGYGLGLGIIKGILEMHHLKLEYQYKANRHYFMIIFKAL >gi|197282990|gb|ABQU01000060.1| GENE 7 3702 - 4628 826 308 aa, chain + ## HITS:1 COG:Cj1237c KEGG:ns NR:ns ## COG: Cj1237c COG0248 # Protein_GI_number: 15792561 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Campylobacter jejuni # 5 300 2 316 324 117 30.0 3e-26 MKECIGIDLGSNSLRGVRMNEEYQVLCEYEEVVRTSEGLEESGEICKNALERIIAGLERM KKELKVTPKDKIVALTTQAMRQAKNNQEILKAIETASGICFKIIKGDEEAYITSLAPQMA IENLQKTNPKYKQDCYVLVDMGGASSEFIFCTKEGIFAKSFEIGIVKAKDKYKSIENLLK CKDEVLAPIQKFIEENQKQGRKAKFLVANSGTPTMVCAFKMGLKQYDSKKVFGETLHRVD FRDELERFLALSYKERENLVGVFRADVVPFGIVLFLLFMEILDFQECLILDEGVREGAAI LGILDKQI >gi|197282990|gb|ABQU01000060.1| GENE 8 5025 - 6536 2031 503 aa, chain + ## HITS:1 COG:HP0601 KEGG:ns NR:ns ## COG: HP0601 COG1344 # Protein_GI_number: 15645226 # Func_class: N Cell motility # Function: Flagellin and related hook-associated proteins # Organism: Helicobacter pylori 26695 # 1 502 1 509 510 416 60.0 1e-116 MAFQVNTNVNALNATAQSTFTQTSLSSSLQKLSSGLRINSAKDDASGMAIADSLRSQANA LGQAIRNTNDGMGIIQIADKAMDEQVKILDTIKTKATQAAQDGQTTTTRTAIQADINRLI ESLDNIAQTTSYNGLNLLAGSFTNKEFQVGAYSNQTIRASIGATSSDKIGHVRSETMKFT AMGGVALNFIATNGGKDVSIESVVISTSAGTGLGAVAEAINKNSDNLGGVRADYTVIAAG ANAIAAGDITSLTINGVSIGNITGVQANDKDNRLVQAINAYKDTTGVEASVDKDGRLVLT STDGRAIQVSGDGMSAGGAGIVTAAGGATTTVVGSLTLTRLGAGDIKVSGTGLDGVTTAV GSAAAQTTTTLRQIKGELSADIKSAIGANASVNSASTEFGGTLGAGVTTLKGAMLVMDIA ESAIKQLDTIRADLGSIQQQMQSTINNITITQVNVKSAESGIREVDFASESANYSNLNIL AQAGSYAMSQANTVQQNILRLLQ >gi|197282990|gb|ABQU01000060.1| GENE 9 6788 - 7808 776 340 aa, chain + ## HITS:1 COG:HP0711_2 KEGG:ns NR:ns ## COG: HP0711_2 COG1896 # Protein_GI_number: 15645334 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Helicobacter pylori 26695 # 188 334 1 148 212 191 60.0 3e-48 MRKPTLNIALLRRIFVAANIRRWNDQATPVEFYELDKQAHKIVIAYLLAHFEEIENGRKV DWERLILQFCYEFFERIILTDIKPPVFHKLANKHNKELVDFVCKELEEDLGKFSFFAEMR EYLYGNIENLEKEILKASHYYASKWEFDIIYHFNPKMYDVQNIKNIIDRQVEEHYHLAGI KQIVLYEDIRELVAMFGQLRFQKRWSQTPRIPATSVLGHTLIVALCSYLLGYDLGFCRQV QINHFLCGLFHDLPEILTRDIISPIKRSVEGLDEFIKQIEEEAVKEKILSKVPEAIKQDI IYFTQNEFVNRYKKANEVIYLPKGEDILQKYNQDSNCAIF Prediction of potential genes in microbial genomes Time: Tue May 24 02:39:47 2011 Seq name: gi|197282989|gb|ABQU01000061.1| Helicobacter pullorum MIT 98-5489 cont2.61, whole genome shotgun sequence Length of sequence - 25394 bp Number of predicted genes - 29, with homology - 28 Number of transcription units - 9, operones - 6 average op.length - 4.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 7 - 174 146 ## COG1896 Predicted hydrolases of HD superfamily 2 1 Op 2 . + CDS 174 - 806 810 ## COG2860 Predicted membrane protein + Term 873 - 926 1.7 + Prom 823 - 882 5.0 3 2 Op 1 1/0.000 + CDS 934 - 1443 470 ## COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit 4 2 Op 2 . + CDS 1464 - 3305 1894 ## COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit + Term 3312 - 3355 8.3 + Prom 3323 - 3382 6.9 5 3 Op 1 3/0.000 + CDS 3469 - 4287 1004 ## COG0760 Parvulin-like peptidyl-prolyl isomerase 6 3 Op 2 2/0.000 + CDS 4297 - 5220 1018 ## COG0191 Fructose/tagatose bisphosphate aldolase 7 3 Op 3 . + CDS 5232 - 5795 673 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) 8 3 Op 4 . + CDS 5804 - 6355 605 ## COG0693 Putative intracellular protease/amidase 9 3 Op 5 . + CDS 6352 - 7611 1348 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 10 3 Op 6 . + CDS 7611 - 8345 516 ## COG2935 Putative arginyl-tRNA:protein arginylyltransferase 11 3 Op 7 2/0.000 + CDS 8327 - 9109 501 ## COG0688 Phosphatidylserine decarboxylase 12 3 Op 8 9/0.000 + CDS 9113 - 10108 921 ## COG0379 Quinolinate synthase 13 3 Op 9 . + CDS 10119 - 10943 366 ## PROTEIN SUPPORTED gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 14 3 Op 10 . + CDS 10972 - 11832 439 ## COG0611 Thiamine monophosphate kinase + Prom 11970 - 12029 8.6 15 4 Op 1 . + CDS 12090 - 12179 70 ## 16 4 Op 2 . + CDS 12200 - 12367 126 ## gi|242309452|ref|ZP_04808607.1| predicted protein 17 4 Op 3 . + CDS 12364 - 12645 227 ## gi|242309453|ref|ZP_04808608.1| predicted protein 18 4 Op 4 . + CDS 12560 - 13933 1465 ## CCC13826_0026 response regulator + Prom 13942 - 14001 5.4 19 5 Op 1 39/0.000 + CDS 14024 - 14851 1109 ## COG0226 ABC-type phosphate transport system, periplasmic component 20 5 Op 2 38/0.000 + CDS 14851 - 15699 840 ## COG0573 ABC-type phosphate transport system, permease component 21 5 Op 3 41/0.000 + CDS 15696 - 16529 691 ## COG0581 ABC-type phosphate transport system, permease component 22 5 Op 4 1/0.000 + CDS 16526 - 17281 205 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 23 5 Op 5 40/0.000 + CDS 17317 - 17985 666 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 24 5 Op 6 . + CDS 17992 - 19680 1195 ## COG0642 Signal transduction histidine kinase + Term 19735 - 19780 -1.0 25 6 Tu 1 . - CDS 19694 - 19951 286 ## CFF8240_0305 XRE family transcriptional regulator - Prom 19979 - 20038 5.3 + Prom 19952 - 20011 10.8 26 7 Tu 1 . + CDS 20051 - 20284 271 ## gi|242309462|ref|ZP_04808617.1| predicted protein + Term 20285 - 20327 4.0 27 8 Op 1 4/0.000 - CDS 20312 - 22240 1973 ## COG2604 Uncharacterized protein conserved in bacteria 28 8 Op 2 . - CDS 22296 - 23846 2173 ## COG1344 Flagellin and related hook-associated proteins - Prom 24041 - 24100 6.1 + Prom 23885 - 23944 6.9 29 9 Tu 1 . + CDS 24027 - 25392 1175 ## WS2197 hypothetical protein Predicted protein(s) >gi|197282989|gb|ABQU01000061.1| GENE 1 7 - 174 146 55 aa, chain + ## HITS:1 COG:jhp0650_2 KEGG:ns NR:ns ## COG: jhp0650_2 COG1896 # Protein_GI_number: 15611717 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Helicobacter pylori J99 # 1 55 158 212 212 68 63.0 3e-12 MKYCDHLSAFLEARISISHGISSKELEEGARNLEYLYNAKNLNGIDLGYLFRDFK >gi|197282989|gb|ABQU01000061.1| GENE 2 174 - 806 810 210 aa, chain + ## HITS:1 COG:HI1240 KEGG:ns NR:ns ## COG: HI1240 COG2860 # Protein_GI_number: 16273159 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Haemophilus influenzae # 1 205 1 204 220 204 55.0 1e-52 MLLTILYIIGIIAEGMTGALAAGRHNMDWFGVIFIACVTAIGGGSIRDILFGHYPLTWVA HPEYLAMVCIAALITTRIPYFVERFEKAFLILDALGLAVFSVIGARIGMDFHPSGAMAVA GAVITGVFGGILRDIFCARIPLVFQKELYASIALLVGSLYVALEFIAQNYFKLDENFIVI FALLVGFIARIIAIRYHLGLPTFKYTPKNN >gi|197282989|gb|ABQU01000061.1| GENE 3 934 - 1443 470 169 aa, chain + ## HITS:1 COG:Cj1358c KEGG:ns NR:ns ## COG: Cj1358c COG3005 # Protein_GI_number: 15792681 # Func_class: C Energy production and conversion # Function: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit # Organism: Campylobacter jejuni # 7 168 6 170 171 224 62.0 5e-59 MEGNEPKKPLSLMAGLLGILCVLIVVIGLYTFYNAKGMSYFSNDSEACNNCHIMNDVYND WSRGSHSQKIAGKPRATCNDCHLPHSFVEKWVAKAESGIGHAYAFTFKLDVLPTNLTATQ KSKNMIQDNCVRCHSEMVSNVVNPTTNPHGNGSLSCVSCHTGVGHKRGF >gi|197282989|gb|ABQU01000061.1| GENE 4 1464 - 3305 1894 613 aa, chain + ## HITS:1 COG:Cj1357c KEGG:ns NR:ns ## COG: Cj1357c COG3303 # Protein_GI_number: 15792680 # Func_class: P Inorganic ion transport and metabolism # Function: Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit # Organism: Campylobacter jejuni # 4 609 2 610 610 926 71.0 0 MQKKSLVMPILVVIAVIVVAGLLWLNSDITKKQSEGTGGISSKGFVEMSDDNPTFDHWGQ NFPDYLDMYLTVEREQPIVTEFGGNLAYSKLIRYPQLTVLWAGYPFSIDANEERGHFWIQ VDQMDTARNNKDFLNAHGFGAFGGQPTACMNCHSGWSPWLLKNVGIGDTPEEKWISFNST KYWTMIKNVPEVEGVADHSGPHGGTRMGVTCADCHNPNDMQLRLTRQAAINALVSRGYEP DSVTGVKATREEMRTLVCSQCHVEYYFKPTGTKVKVMGESIANDPSKKWWNGTQKTYDEI DVWRDGNKPTEIEVDGLELVFPWSEWKKNEPFRIEMFDAHYEKVRNVFDKDWEHKFTKAP MLKIQHPESELYSGGVHAANGVSCADCHMPYIRKGAKKMTQHNITSPLQDINAACKTCHT QSEEYLKQQVLDIQKSVAFDLRSAEYATVSLIEDIKVLREKLGQLPEYQSDGKPDNAKIS AVLKEPLELHRKGQMRGDFVGAENSTGFHNPREASRMLLQAVEMARMGQTKLVEIANANG IKDFKTSNLGFEDIQKLNPGEIRYKVDLNGHKAGERYYKHEEINGPAPKELLEMDKNNKP YNYKVIDSKTSSY >gi|197282989|gb|ABQU01000061.1| GENE 5 3469 - 4287 1004 272 aa, chain + ## HITS:1 COG:Cj0596 KEGG:ns NR:ns ## COG: Cj0596 COG0760 # Protein_GI_number: 15791956 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Campylobacter jejuni # 1 268 1 271 273 151 37.0 1e-36 MKKMILSSALAFALFQGVSFAETFAKVNGDEITEKDIAALMRAMPGVSFAQLPQDAKSQV INQAIERKLLIEQAKKDGVEKTKDFKNALESVKDDLALEVWMRQEMEKVRVSDSEIEKFY NDNKTKFVQPEVAKVRHILVNSETEAKNIISDVKRAGKNSLAKFEELAKSKSKDGSAQNG GDVGWIARGQVVPEFADAAFKLNKGQYTQTPVKTQFGYHVIYVEDKKPTTTLALKDVKGQ IEQNLRLMKFQENVKKEGQELRKKAKVEITAK >gi|197282989|gb|ABQU01000061.1| GENE 6 4297 - 5220 1018 307 aa, chain + ## HITS:1 COG:jhp0162 KEGG:ns NR:ns ## COG: jhp0162 COG0191 # Protein_GI_number: 15611232 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Helicobacter pylori J99 # 1 307 1 307 307 486 79.0 1e-137 MLVCGNAILDKANKENYGVGAFNFVNYEMLSAIFEAANLKNSPIIVQASEGAIKYMGIDM AVGMVRILAQRYPHIPVALHLDHGTSFESCIKAIRAGFTSVMIDASHHPFEENLAETKRV VEVAHIAGVSVEAELGRLMGIEDNISVDEKDACLVNPQEAEEFVKESGVDFLAPAIGTSH GAFKFKGEPKLDFERLIEVKKRTKIPLVLHGASAIPQNVREAFLESGGDLKGSKGVPFEF LQEAIKGGINKINTDTDLRIAFMSEVRRVANEDKTQFDLRKFFAPAKDFMIKVIAERMDI LGSSNKI >gi|197282989|gb|ABQU01000061.1| GENE 7 5232 - 5795 673 187 aa, chain + ## HITS:1 COG:HP0177 KEGG:ns NR:ns ## COG: HP0177 COG0231 # Protein_GI_number: 15644806 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Helicobacter pylori 26695 # 1 187 1 187 187 292 77.0 2e-79 MAYSMSDLKKGLKIELEGIPYRITEYQHVKPGKGAAFVRVKIKSFLDGRVLEKTFHAGDK CEEPNLQEKSMQFLYHDGEFFQFMDNETYEQIGLSEDQVGDVAKWMIDSMLVSILFHNGK AISVDVPQVVELKVVETPPNFKGDTASAGKKSATLETGAVVQVPYHVLEGDIIRVNTETG EYLDKVK >gi|197282989|gb|ABQU01000061.1| GENE 8 5804 - 6355 605 183 aa, chain + ## HITS:1 COG:BB0621 KEGG:ns NR:ns ## COG: BB0621 COG0693 # Protein_GI_number: 15594966 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Borrelia burgdorferi # 8 182 7 181 184 118 39.0 6e-27 MVKILVPLGKGFEELEAISIIDVLRRAGCQVIIASLKDNLEVLSQGGVKIIADVDVSKVE ALKIDAVVFPGGWEGTENLIECKELRELVLEMDSQRKIIAAICAAPYALFKMGVLKNRNF TCYPSIEKMIDNPNYQDSKNVIHDENIITSKGPATALEFAYYLVKTLVSPQKEKEVKEGM LFI >gi|197282989|gb|ABQU01000061.1| GENE 9 6352 - 7611 1348 419 aa, chain + ## HITS:1 COG:VC0450 KEGG:ns NR:ns ## COG: VC0450 COG0741 # Protein_GI_number: 15640477 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Vibrio cholerae # 92 402 87 393 396 280 48.0 4e-75 MKFFKVGILFAIIGLLLAGCLAGYRNLIYNPQNITKEQVVKEVIHNALETTVSEVLDTQE PITKTISIENIIKNLKTHFEQVVTQLVQKAAKNWGKDNAATASQEVYVKYTDSYLSKAEV DFSKGIISVATLDTKDPKKALHKAIVATLLTPEDPEKVDLYSDKEITYSGKPYLANLVKD NEGVVVLYPWRANRYATYLIDNALKTKDITEDGKTKKVYYVQFNMVADREIQSEHKYGEY VALYAKEYQLEQALIFAIIKTESSFNPYAVSHIPAYGLMQVVPASAGRDVYKALNDKDGV PTKEMLFTPKINIQYGSTYLNILFTRYLKGINNSLSHEYCVIAAYNTGSGNVLSVFHSDR KKAIEVINSMTSSEVYRKLRTSLKYEEARNYLLKVTNAKKEFQQTATNTQDSGILLSVR >gi|197282989|gb|ABQU01000061.1| GENE 10 7611 - 8345 516 244 aa, chain + ## HITS:1 COG:Cj1035c KEGG:ns NR:ns ## COG: Cj1035c COG2935 # Protein_GI_number: 15792362 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Putative arginyl-tRNA:protein arginylyltransferase # Organism: Campylobacter jejuni # 13 236 13 239 239 187 41.0 2e-47 MEVFEIAQAPKSCGYLEGIEAKYRYLYIKECSKEFYDLLLQRGWRRFGNYFFVPMCEGCE SCISIRQDCEAFSFSKSQQRILKNPLTLEISKPRVSKEHLELYDKYHCVMNSKKGWQYQG ISLESYYDTFVRGYEDFGYEFCYYFEGHLVGVALVDILDNAISAVYCYYDHNFAKYSIGS YSILKQIAIAKEYNIKYFYPGYWIKNHYSMGYKEKFKPFEILINRPNLNEEAIWKKEESC ITQT >gi|197282989|gb|ABQU01000061.1| GENE 11 8327 - 9109 501 260 aa, chain + ## HITS:1 COG:HP1357 KEGG:ns NR:ns ## COG: HP1357 COG0688 # Protein_GI_number: 15645969 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine decarboxylase # Organism: Helicobacter pylori 26695 # 4 258 5 264 267 221 45.0 8e-58 MHYTNLISQLFEKISHFAFYPKIQILINKFYIRIFNINMEEFDTLQSYPTLNALFTRSLV KMRSFDKSEVAMIAPCDSVVMESGVCKENLAMQIKGKSYKIDDFIHHKIDENFFYVNFYL SPSDYHRFHAPLDLWVKKIAFIQGLLLPVNERSLYKNENLFIKNKRVVLECEDEFGNDLY YVAVGALNVGKIQINLESKIANLKENESFCYEKPIFVKKGDELGCFQMGSTIVMFSKNWE YNLKIKEKVLFGQQIAKYKG >gi|197282989|gb|ABQU01000061.1| GENE 12 9113 - 10108 921 331 aa, chain + ## HITS:1 COG:jhp1274 KEGG:ns NR:ns ## COG: jhp1274 COG0379 # Protein_GI_number: 15612339 # Func_class: H Coenzyme transport and metabolism # Function: Quinolinate synthase # Organism: Helicobacter pylori J99 # 1 331 7 336 336 420 63.0 1e-117 MQARIKELLKKHDVLLVAHYYQRDEVVEIADLSGDSLELAKKASCSPHQNVLFCGVGFMG QSVKILSPSKRVFMPKIACCSMARMIDDTYFDKSIEKLKEYGINEIFPVTYINSNAEVKA KVAELGGVVCTSANAAKIMDYALKQKKKIFFLPDRCLGQNLAMQNGLKSAVLGVDSKEVV LEADVICYDGFCSVHQLFTPEDIDFYREKYEGILVAVHPECTPEVVKKADFVGSTSQIIQ YVQNLKPNQKVVVGTEFNLVNRLRKPHNGIQNTFVLSSTKPECPTMNETTLQDVLSVLEA LESGKPYNEILLSQEVAIKAKKALDKMLEFS >gi|197282989|gb|ABQU01000061.1| GENE 13 10119 - 10943 366 274 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 [Kordia algicida OT-1] # 5 272 11 283 286 145 35 3e-34 MEILLDDFLKAVLKEDIGRGDLYSKIENNIQVESYILAKESGILSGRIYIERLCKLLGIE VNFVIKDGMEFKKGSKLATFSGKMSEILSAERVILNLLQHSSGIATLTRKYIDAMQDSSC VLLDTRKTRPLLREFEKYSTCNGGAVNHRLGLDDCLMLKDTHLSRILSLKKFIQEIRKKI PFTTKIEVECENLLQAKEALESKIDILMCDNMDIPTITEVVKMRDEIAPNVLLEASGNIT LANIQEYAKSGVDAISSGAIIHQATWLDMSMKID >gi|197282989|gb|ABQU01000061.1| GENE 14 10972 - 11832 439 286 aa, chain + ## HITS:1 COG:Cj1458c KEGG:ns NR:ns ## COG: Cj1458c COG0611 # Protein_GI_number: 15792775 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate kinase # Organism: Campylobacter jejuni # 3 285 2 272 273 173 36.0 4e-43 MQDREKAFIKTLAQSKSTFGIGDDGVLLGDFVVANDAFFEGVHFKREWGSLESLIQKSFL VNLSDIYAMNAIPKYALLTLCIPKDFKEARELARVFSRVAEKFEVKIVGGDTIVGEKLQI ALTIVGEKQKKTLFRKKIQKGDFLAYLSPRSPLNLAPKQAFGKNLRALKCALRFNQISKN SRFECPLVYPKMIFAFNDVAKAGMDISDGIFVELGRLGQINKVDFELLKPKGEWFYSPEE YQMLYALSAKNLKKAQNLAKKFRHHLVIFARAKRGKYQSLKKNWHC >gi|197282989|gb|ABQU01000061.1| GENE 15 12090 - 12179 70 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFKAFVGLVLSLVLVTSLFLGSESRGNSK >gi|197282989|gb|ABQU01000061.1| GENE 16 12200 - 12367 126 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309452|ref|ZP_04808607.1| ## NR: gi|242309452|ref|ZP_04808607.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 55 1 55 55 109 100.0 7e-23 MAPKGLKTFAIEDYNLLASGSSSVVSLEDFDIYCDANTLNIIMIDFRNTRQGAWE >gi|197282989|gb|ABQU01000061.1| GENE 17 12364 - 12645 227 93 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309453|ref|ZP_04808608.1| ## NR: gi|242309453|ref|ZP_04808608.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 93 1 93 93 148 100.0 1e-34 MITLSNGLSLSFATNLALEAKKDSNGTSLSAIARNNYIEINDETLKKHELQMKTDAILNG TKSYFYGEFLSPRLSNNRSNAWLLYNYRENLTE >gi|197282989|gb|ABQU01000061.1| GENE 18 12560 - 13933 1465 457 aa, chain + ## HITS:1 COG:no KEGG:CCC13826_0026 NR:ns ## KEGG: CCC13826_0026 # Name: ompR # Def: response regulator # Organism: C.concisus # Pathway: not_defined # 33 454 131 583 586 159 32.0 2e-37 MGSFYRHDYQITDLMLGYYTTTERTSLNKTSILNDYGRSNILKTPVGDMEVFLDLEGDND KYGVGKLEYLGQLINLDVNKDGFLDSSDEFFDKLKLRGYNSAGEEVILKFSDVYKALDLT KFVHTQKDVDKARANGDTISNGTLLFAPELSYKKIESQDLKKLFEVYADESGWIDLSKTY IGKEGKKNYVYWDFMNSFNFAFKSPMLNGSTRLETFAMSPFDEEMIKEFGYKDYKDFRDS KMDLASEVKFRFDYMYQNYYYKDADFITELSIRREFQKLTGMEFSESRFKEIYEGLNSND PEIMQKYVNALDGGLDAVNGLKLNDDGSITLWFVLGKTINVNELYMSNGEFNLTNTGQVA SVMTEASEMSEEKLNELDFTQIGTDSNGSIVSLAELGVEFIQKTIFANGQNAFILTTGDG KEMVVENLYKIRSVEDMVRFGEIDEEEKLRIKYEWDA >gi|197282989|gb|ABQU01000061.1| GENE 19 14024 - 14851 1109 275 aa, chain + ## HITS:1 COG:SP2084 KEGG:ns NR:ns ## COG: SP2084 COG0226 # Protein_GI_number: 15901900 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 26 275 40 291 291 171 42.0 1e-42 MKKCLLGLLASCMLSGVLMAQDIFPISREMGSGTRGAFVEIFGIQKEVRNKKVDATTQKA EVTNSTGVMMTTVANSANSIGYISLGSLNDTIKAVSIDGVSPSVQNINNKTYGISRPFNV VTKAMNPVIEDFLKYALSKEAKGIVEKAGYISVAKDSYASTKLSGKIIIAGSSSVTPLME KLKESYEKINPNVEIEIQQSDSTTGVNSVVEGIADIGMASREIKESELKKGINAQVLAVD GLAVIVNKENPISNLKKEDVRKIFLGEITSWEQVK >gi|197282989|gb|ABQU01000061.1| GENE 20 14851 - 15699 840 282 aa, chain + ## HITS:1 COG:SP2085 KEGG:ns NR:ns ## COG: SP2085 COG0573 # Protein_GI_number: 15901901 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 4 278 7 281 287 247 53.0 2e-65 MISKEKFFQGIFAFCAIISTLAVGMICIFLFGNAIPTIHEIGFIHFIFGMDWYPTEGIFG IFPMIVGSIYVTALAIFIGVPIGVLSAIYLSAFCPKKLKKYIMPAVELLGAIPSVVYGFF GLVVVVPILADIFSGIPGKSVLAASIILAIMILPTIILVSKAALDSVPKSYCEGALALGA SKERSVFFASLPAAKSGILSSIILGVGRAIGEAMAVIMVAGNQVQIPESVLDGVRTLTTN IVLEMGYATDLHKEVLIANAVVLFVFILLINACFNALKREVK >gi|197282989|gb|ABQU01000061.1| GENE 21 15696 - 16529 691 277 aa, chain + ## HITS:1 COG:SP2086 KEGG:ns NR:ns ## COG: SP2086 COG0581 # Protein_GI_number: 15901902 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 24 276 17 270 271 238 57.0 7e-63 MKKARVDYLSICLSWLLKISMFSTLFVFFVLIGFIFYKGVMYLSWDLFAWEYTSENVSMM PAIINTINMVLFSLLIALPLGIFGAIFLSEYGNKKSRLLNLIRVASDTLVGIPSIVYGLF GYLAFVIYFGFRTSFIAGVLTLSIMILPLILRSSEEALRSVPMSFREASFALGAGKLRTI FAIIVPAAIPGILAGVILSIGRIVGESAALLYTSGSVAKVAGVMDSGRTLSVHMYAISSE GQHINQAYSTAMILILIVLVINIASNLIAKKLTKGSL >gi|197282989|gb|ABQU01000061.1| GENE 22 16526 - 17281 205 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 226 7 223 318 83 29 1e-15 MKNVCFEIKKMNLYYGNFLALKNINMQINKGKVTAFIGPSGCGKSTFIKSLNRMNDLVED CKIEGKILFDGKNIYKDYDVNILRKRVGMVFQKPNPFPMSIYDNIAFGPRTHGIKKKSKL DDIVEQSLKDAALWEDLKDRLDKNALGLSGGQQQRLCIARTLAVNPEVILMDEPTSALDP ISTLKIEELIMRLKKEYTIIIVTHNMQQAARISDQTAFFLLGEVIEYDDTSKIFNKPKDK KTQDYISGRFG >gi|197282989|gb|ABQU01000061.1| GENE 23 17317 - 17985 666 222 aa, chain + ## HITS:1 COG:CAC1700 KEGG:ns NR:ns ## COG: CAC1700 COG0745 # Protein_GI_number: 15894977 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 2 219 6 228 232 171 42.0 1e-42 MIYVLEDDNSILELILYALKSQNIEAKGFSEPLALQEAIKEEIPQILILDVMLPGISGFE ILREIKNSEKTKGIAVLMLSALNSELDKVKGLDCGADDYITKPFGVMEFLARIRALLRRV EAKKDEIIFGELEYSSIKHSVTLRGKKVDLTLKEFEILGLLLKNIQRAFSRDEILEILWG DSYNAESRRVDIHIKTLRQKLGDFGEHIKTIRGIGYQFSREI >gi|197282989|gb|ABQU01000061.1| GENE 24 17992 - 19680 1195 562 aa, chain + ## HITS:1 COG:CAC1701 KEGG:ns NR:ns ## COG: CAC1701 COG0642 # Protein_GI_number: 15894978 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 40 558 40 561 566 215 33.0 2e-55 MQKKIFYSIFSACLCLLIFVNIFFVFALEGFLQKEMFIQLKKQAKAIQPYIHKILQKDTD DFFEFLTKNHYRLSVISANGEVLYDNQADIGKMENHSKREEIKNAIANGDSKIVRYSNTL KEKTFYYALFLKEQNVVLRLSNTQEYIVGLFGEFIPYFVFEILVLLVVLYLLAKILTKMI LKPILEIDLEHLSEDSLYGELHSFVKKIKDQNKTIKNQFKHLKQKRQEMLLLTENMSDGL ILLNRHGSILNTNKSAQAYFANLEGISSIYQLEDSRFLKIALEYLKEFKKNKKRDNKILQ MQLLGYECEVVFSPIFSKNEKFKGMVIVLRNITEKKLAQNLRKEFSANVTHELKTPLTSI LASSEMIKNGLVAKEDLPEFIDKIALESKRLLEMIDEILKISFLDECDEEVLKKNRINLK NMVLNVIKRLQLVAQKNDIAIIPKLEDCSIVGVNELLENLIFNLCDNAIKYNKKGGFVEI VLEKLPNEVVFRVKDSGVGIPKEYLSRIFERFFCVDKGRSKKLGGSGLGLSIVKSALKYN NAQIEVKSEVGVGSEFIVHFKI >gi|197282989|gb|ABQU01000061.1| GENE 25 19694 - 19951 286 85 aa, chain - ## HITS:1 COG:no KEGG:CFF8240_0305 NR:ns ## KEGG: CFF8240_0305 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: C.fetus # Pathway: not_defined # 1 83 1 83 86 97 61.0 1e-19 MDNQLGNATEEEILNFYQNISKTIRNIREEKGISQLDLALEIGIKSVAFYSNCECCRYGK HFNLEHLYKISKALEIDICSFFKSS >gi|197282989|gb|ABQU01000061.1| GENE 26 20051 - 20284 271 77 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309462|ref|ZP_04808617.1| ## NR: gi|242309462|ref|ZP_04808617.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 77 2 78 78 115 100.0 9e-25 MKKIFIALLMAVFTNFCLATDDELANDIKNKAIDIGFGAISGFLSGKSSEEIAKDAKEQA IDATKETADKKLNEMKK >gi|197282989|gb|ABQU01000061.1| GENE 27 20312 - 22240 1973 642 aa, chain - ## HITS:1 COG:jhp0106 KEGG:ns NR:ns ## COG: jhp0106 COG2604 # Protein_GI_number: 15611176 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori J99 # 9 633 4 627 627 603 50.0 1e-172 MSDYTNPRFEKNLKALYQKNPLLAAQLKILEPNQKYEVYVGKDPLNINIYDKERKVALFH QEPLVEVTQKIKEFEAYNLYPFFYFFGIGNGIFHKFLLNNSSLKKLFIFEPELELIYIAL NFVDFEQEILDEKLLIFWTKTASFGELDQYLVQEGQWIYSRIYTLHIYNNYYGTYTEECL ELNAIITRSLEHHVIAVGNDSTDALIGLEHHIYNLPEMITTPSFKELISHAKNCDTAVIV STGPSLYKQLPLLKQYVPYLTIISVDASFPILTKHGIKPDIVVTLERVEPTADFFIKTPK KAQKGIIFALTSIVHKATTKAITQGTKSFSMRPFGYTRFFNLQDYGYAGIGMSAANMAYE IVVHSRFERCIFIGQDLAFSKDGKTHSKDAIFGENETQYKRKENESEKILVPAYGGNEMV ETTSVWKMFLNFFEKDIAETPYNLEVINSTEGGARIAGTKEIPFEEILKTLPKVPKKEIK LVPPTKEQIKANQKHIQTKIKEFLDYGYKRKKEVEKIFLKVVKMTEELECLNKENKLEKI NFKKMDKLIEEIDDVKLLFQEDTFIKVFSDAVQSYIVHQELEFAKIAVRPIKTLIEKQVK QIDWLYAHKFWLFSLAGGMDATLEITKRSAKQWMKLPAKYNK >gi|197282989|gb|ABQU01000061.1| GENE 28 22296 - 23846 2173 516 aa, chain - ## HITS:1 COG:HP0115 KEGG:ns NR:ns ## COG: HP0115 COG1344 # Protein_GI_number: 15644745 # Func_class: N Cell motility # Function: Flagellin and related hook-associated proteins # Organism: Helicobacter pylori 26695 # 1 516 1 514 514 529 70.0 1e-150 MSFRIYTNVNALNAHTSGLVNNRNMAESLEKLSSGLRINKAADDASGMAIADSLRSQAAA LGQATRNANDAIGMIQTADKAMDEQIKILDTIKTKATQAAQDGQTTTTRTALQNDILRLM EELDNIANTTSFNGQQMLSGAFTNKEFQIGAYSNVTVQASIQPTNSNKIGHVRYETAAEM VVSAGADSFGEVSLRFLNTDGTNNYAIETVKISTSAGTGIGALAEAINKNSDTLGVRASY SVIGQGGTEIASGTIRGLVINGIQIGDINDVQKSDSDGRLIAAINAQKERTGVQASLSIS GALQLTSTDGRAISVQVTSGSTVLGGGSFAGVSGTTHAIVGRLTLTRLNARDILVSGTGF SNVGLHSGAANIQAGSGYAQYTVNLRSVKGEFDANIASAIGANANASIAAVNANGIGAGV TSLEGAMAVMDMAQSAQEHLDRIRADLGSVQQQLVSTINNITVTQVNVKSAESQIRDTDF AEESANFSKTNILAQSGSFAMAQANQVQQNILQLLQ >gi|197282989|gb|ABQU01000061.1| GENE 29 24027 - 25392 1175 455 aa, chain + ## HITS:1 COG:no KEGG:WS2197 NR:ns ## KEGG: WS2197 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 2 454 8 464 692 346 40.0 1e-93 MEIQTQEILTRLKEAQTKENINECVQFIRAFGQEWQEKLEDSLRQKIVGLLRDRILEIIV SKGDVLEKNIFWAYGLLIPNKISKDERFLKYFDFCAPYVEDSNISYYEKLLFIEFASGAL LLAGERERAVKFFFSKIIYLSLRENYMVELDPFVREFLYYYEIPIEWILEIQREALEWER FSKLDDFTKKTIFLWNMHCFWNVKHYFNHLKWRENFPTWLDCLKKLLEAGKLDMAMYVEF YIYHKFGNSAQTQEDWQEYNDKVVKLVEPYYVEYGKNLPKCKEKVGGKKGEKIKIAIIKD RIVENSPYKVEYSLCKALMQNEEFASKYEVVVYSMNYIQKSEDGIGTMQSFVQVGVPVIC PAYQLVRQHSYYYSHLQKALLIRQSLLNEGVDIIIITGTIDCADFLFATRSAPRQIYWSH GNGRYDIVGIDERISHFAPPRPLFEFKNFSIPMDI Prediction of potential genes in microbial genomes Time: Tue May 24 02:40:20 2011 Seq name: gi|197282988|gb|ABQU01000062.1| Helicobacter pullorum MIT 98-5489 cont2.62, whole genome shotgun sequence Length of sequence - 4385 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 26 - 511 189 ## Suden_0188 radical SAM family protein 2 1 Op 2 . + CDS 534 - 1718 879 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 3 1 Op 3 . + CDS 1720 - 3726 1613 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) 4 1 Op 4 . + CDS 3729 - 4340 456 ## CbuK_0702 methyltransferase (EC:2.1.1.-) Predicted protein(s) >gi|197282988|gb|ABQU01000062.1| GENE 1 26 - 511 189 161 aa, chain + ## HITS:1 COG:no KEGG:Suden_0188 NR:ns ## KEGG: Suden_0188 # Name: not_defined # Def: radical SAM family protein # Organism: T.denitrificans_ATCC33889 # Pathway: not_defined # 18 150 135 266 279 147 52.0 1e-34 MGFNNAKIIIDNKPEWCTTTFQISFVDSEKTTKKYLNNIVTDSKLLGFDSIRLYKEHTIG GEFGKTQSQVCKSRHFCPKLAHTFVVSSDGYFSRCNHIWETQREFNLSNYSIKEVWESEV MRRIREDYPDKQCLPCDQWSGHTCGESWVKTKSGINHKKFF >gi|197282988|gb|ABQU01000062.1| GENE 2 534 - 1718 879 394 aa, chain + ## HITS:1 COG:MJ1066 KEGG:ns NR:ns ## COG: MJ1066 COG0399 # Protein_GI_number: 15669255 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Methanococcus jannaschii # 4 394 7 382 386 244 32.0 3e-64 MMKIPISKPYFDEEDKNIIKKPLESGWVVQGPFVGEFEERFASFTKTSFAIATSNCTTAL HLGLIALGVGRGDKVVVPSFTYIASANAIEYVGAVPIFCDIDLESFNINLESLREILDKQ SKIKAIMPVNLFGLCANMESIIEIAKKYNVKVIEDSACGFDSWIGSKHSGTFGDCGCFSF HPRKSLTTGEGGMLITNNSEIAQKVRSLRDHGASKTDFQRHSGQDTFLLPSFKMLGYNYR LTDIQGALGVSQIKKAEKIMDNRRKIAQKYDRALKDISQFVLPRAQEGFKHGYQSYVCLF GGEEVLKMDSIEKVDAMHIKRNLFMQKLEALGISTRQGTHAVHTLEYYKNKYNLQRQDYF KSYVADRLSISLPLYPQMTMQEFEYIIDSIYKVL >gi|197282988|gb|ABQU01000062.1| GENE 3 1720 - 3726 1613 668 aa, chain + ## HITS:1 COG:BS_asnB KEGG:ns NR:ns ## COG: BS_asnB COG0367 # Protein_GI_number: 16080106 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Bacillus subtilis # 1 668 1 615 632 273 29.0 7e-73 MCGIVGVLGFCNKNIDVDNLVPMVDSIAYRGPDDAGYLFFHTGLHQDPKVSFFQAFSDKN FSHLSPLLPIIQDEASQREIRAHNWDIFLGHRRLAIVDESSAGHQPMSDLSKNIWLTYNG EIYNFREIRKELEDCGYRFFSQSDSEVIIYAYIQWGIECIEKFNGMFAFGLYDNFKKKFY LVRDRYGIKPLYYCRDSDYFIFASENKAIVTYNSRLKTLDYQALLEYFTFQNIFTNRTLF KNIQLLEAGHYLEIDLQSEKIFKNQYWDFCFQETLNMKNAMDYQDELVRLLKQAVQRQIA VDIPLGSYLSGGIDSGGICGIASKYIPNLNTFTIGFDLTSAKGMELGFDERSISEYLSYL FRTEHYEMVLKSGDMERCLRDFTYHLEEPRVGQSYPNYYAAKLASKFVKIVLSGCGGDEL FGGYPWRYYNAIESCSFEDYVDKYYLFWQRLIPNTILKKLFAPIGDKIDGVWTRDIFKQV LQGGNPQAKTKEEHINNSLYFEAKTFLHGLLVVEDKLSMAHSLETRIPFLDNDLVDFAQK IPIQLKLGKTMIYDSVNENSIYQKSLRYNMDNSGKVILRKVVESFIPKEIAKAKKQGFSS PDKSWFEGESMEFVKQKLFDKKAAIYDYFDYNVCVTMIDEHLSGKQNRRLFIWSLLNFDE WCNLNLRR >gi|197282988|gb|ABQU01000062.1| GENE 4 3729 - 4340 456 203 aa, chain + ## HITS:1 COG:no KEGG:CbuK_0702 NR:ns ## KEGG: CbuK_0702 # Name: not_defined # Def: methyltransferase (EC:2.1.1.-) # Organism: C.burnetii_CbuK_Q154 # Pathway: not_defined # 1 177 6 184 328 66 28.0 6e-10 MKIETIFKNEEIKFNGNFMEIVDRAKEENQSQTAEVFSEKWVSYSKNVSKEEQEKLWQFQ KEWYLKLYGFDDERDLASFLKTKKVVFDAGCGLGYLSEWFARLSPQSTIVAMDISQSVEE AAKKYKDIPNIFFIRGDIAKTPFKDEVMDYISCHAVIMHTENPEKTFCEFNRILKRNNNS IEAGGGGTRLLCICKKSITQRVS Prediction of potential genes in microbial genomes Time: Tue May 24 02:40:29 2011 Seq name: gi|197282987|gb|ABQU01000063.1| Helicobacter pullorum MIT 98-5489 cont2.63, whole genome shotgun sequence Length of sequence - 10685 bp Number of predicted genes - 12, with homology - 11 Number of transcription units - 6, operones - 4 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 331 227 ## Swol_0713 hypothetical protein 2 1 Op 2 . + CDS 306 - 845 381 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 3 1 Op 3 . + CDS 886 - 1806 555 ## Dtox_4099 sulfotransferase + Prom 1819 - 1878 2.9 4 2 Op 1 . + CDS 1898 - 2872 629 ## AM1_5765 hypothetical protein 5 2 Op 2 . + CDS 2923 - 3090 173 ## gi|242309474|ref|ZP_04808629.1| predicted protein + Prom 3092 - 3151 4.0 6 3 Tu 1 . + CDS 3171 - 3443 241 ## COG0110 Acetyltransferase (isoleucine patch superfamily) + Term 3478 - 3529 -0.6 + Prom 3475 - 3534 11.1 7 4 Op 1 . + CDS 3577 - 4944 1115 ## Maqu_2594 hypothetical protein 8 4 Op 2 . + CDS 4963 - 5979 729 ## Rpal_3594 hypothetical protein 9 4 Op 3 . + CDS 6041 - 6754 379 ## BB0128 hypothetical protein + Prom 6756 - 6815 4.0 10 5 Tu 1 . + CDS 6859 - 7860 690 ## gi|242309479|ref|ZP_04808634.1| predicted protein + Term 7873 - 7922 1.4 + Prom 7872 - 7931 5.0 11 6 Op 1 . + CDS 7988 - 9142 629 ## gi|242309480|ref|ZP_04808635.1| predicted protein 12 6 Op 2 . + CDS 9181 - 10684 588 ## Predicted protein(s) >gi|197282987|gb|ABQU01000063.1| GENE 1 2 - 331 227 109 aa, chain + ## HITS:1 COG:no KEGG:Swol_0713 NR:ns ## KEGG: Swol_0713 # Name: not_defined # Def: hypothetical protein # Organism: S.wolfei # Pathway: not_defined # 1 100 91 191 200 78 43.0 8e-14 WEMSEQLSELGKRLQDLNIKFEAPDIPLLGIKGGEYDIQRFIYWNFLKCFYNQELGWDTS VVTNFDWYSPSNAKRYTQEEFKRWGEIHQMKLIYFHTEEACFGARFQKK >gi|197282987|gb|ABQU01000063.1| GENE 2 306 - 845 381 179 aa, chain + ## HITS:1 COG:BH3001 KEGG:ns NR:ns ## COG: BH3001 COG0110 # Protein_GI_number: 15615563 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Bacillus halodurans # 66 173 74 181 186 73 36.0 3e-13 MGLDFKKSKMRTFLQKSLKLLYIRKKNRYDRVLPFCEYFNDRIQKAIDLGWGSGSSCYDN VYIFGDVKVGSNTFVGPFCILDGSGGLKIGNNCSIAAGVHIYTHNSVQWAISMGKFPYDY KKVEIGNGCYIGPNSVIVGGIKIGDRAIVGACSFVNKDVPSGAKVAGIPARIISGGGGK >gi|197282987|gb|ABQU01000063.1| GENE 3 886 - 1806 555 306 aa, chain + ## HITS:1 COG:no KEGG:Dtox_4099 NR:ns ## KEGG: Dtox_4099 # Name: not_defined # Def: sulfotransferase # Organism: D.acetoxidans # Pathway: not_defined # 1 298 1 288 294 130 32.0 5e-29 MKPNFLIGGTAAGGTSFLYELLIQHPEIYLPYERIPEPHYYYKSWEYKKGLQWYLERYFS EVPKNKIAVGERSSSYLYGGRKIASRIAKDFPNMKFIFMLRNPIQRAWANYRFTALQGLE TLSFEEAIKHEKQRVSEAKGIWKEIQPYDYTGRGFYARQLREFLEFFPKEQILCVKSEEL SNDNLEPLYEIYRFLGLHNQSFVPTPSPCYTSLSVIDVKKQKELRDYFGENFAFLINSIR NEEIKVQKGGQEKYAALIKNIKSDKELMPKQCFSVLLEIFKEDMEELKGMVNFSIDDWGG GTNIDK >gi|197282987|gb|ABQU01000063.1| GENE 4 1898 - 2872 629 324 aa, chain + ## HITS:1 COG:no KEGG:AM1_5765 NR:ns ## KEGG: AM1_5765 # Name: not_defined # Def: hypothetical protein # Organism: A.marina # Pathway: not_defined # 7 318 17 345 345 164 34.0 3e-39 MSIAYSQFLNQCSGSMIYYSLPYKCLLEDFLKCNSRYLVVYDNGKIHGVLPLMYRKGKYG EILNSLPFYGSHGGILATNDDAYDLLIEYYNSIVGNYASANYISNPLVKYDGAKKPVYDF LDKRIGQWTFLVEQNELIKSFDSSATRNIYKAQCKNIEIIKTDSIEFLYKTHKANISQLN GVYKEKEFFEKISKNFGSENYTIYIALYDKIPIAALLLFYFGEIVEYYTPATLFEYRTLQ ALPLLIFNAMNEAFEKGYKMWNWGGTWKSQEGVYRFKKKFGAKEREYKYYVKINNKEILD ASREELLKEYPYFYVIPFEKLNRV >gi|197282987|gb|ABQU01000063.1| GENE 5 2923 - 3090 173 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309474|ref|ZP_04808629.1| ## NR: gi|242309474|ref|ZP_04808629.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 55 1 55 55 92 100.0 6e-18 MDKCDIIQQIMFDWDKYSVEELFEMTKDFPLKLLRYIAMEHPDNFVRKAFLELLM >gi|197282987|gb|ABQU01000063.1| GENE 6 3171 - 3443 241 90 aa, chain + ## HITS:1 COG:mll4701 KEGG:ns NR:ns ## COG: mll4701 COG0110 # Protein_GI_number: 13473942 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Mesorhizobium loti # 2 87 54 148 191 70 41.0 1e-12 MAIATNVTLICDSNPNNSHLKNFTKIQERLIYTKKIIIESDCWIGANATILGGVKIGQYS IVGAGSVVTTDVDSYSIYAGVPARKLRSIR >gi|197282987|gb|ABQU01000063.1| GENE 7 3577 - 4944 1115 455 aa, chain + ## HITS:1 COG:no KEGG:Maqu_2594 NR:ns ## KEGG: Maqu_2594 # Name: not_defined # Def: hypothetical protein # Organism: M.aquaeolei # Pathway: not_defined # 188 410 53 287 339 67 28.0 1e-09 MKILIYGYGWVGKSMLEFLEDQNQEYGERKFDVFVYSDQFSPFIRDDRAIRKLEIGLEDV DIVFICVAKWEIAYKLYLDLVQSGISSEKIKYIDNYLYSCSVKPFLQYSINDFINMWKKD NFLNITFNQLIKVSSQHIGKIYYKAEYFNQMRHSLFDDRIEGEKKLAEYYKDYPVKFPVV GISYALGRCGTTLMTQWLASLGIIEYATNFMQPYVDTPLVGFRNYMLFKKHFNIGFNSVE FESNFGSTRGMFNLLEFSWSELSGEEYKNHDFDFLETKVDYTRSLCAGFCDVAQKPFVFK ASPQDVYIMEKALKKRAIYIVLKRDIYTHTLALVNLYRHFGFANNSLCYYAQFAGKEVSF DKEPILYAAITLKNAIAYQEKILNNVEESRKIKVSYEEFCNNPKALFEKIICCFKECGYD LGRCEYNGVSNFTISPRVVDVETKNIVDSVFNECE >gi|197282987|gb|ABQU01000063.1| GENE 8 4963 - 5979 729 338 aa, chain + ## HITS:1 COG:no KEGG:Rpal_3594 NR:ns ## KEGG: Rpal_3594 # Name: not_defined # Def: hypothetical protein # Organism: R.palustris_TIE-1 # Pathway: not_defined # 24 198 24 205 263 76 30.0 2e-12 MGFYKIDYAIMDFLKQDGLVCEKVLEFGSQDIREDRDGIHQLQRVSAKSIYDSYGFSTYK CIDMDGAHNALLFDLGKNLNQEYGFVEQFNLVTIKEIGHWIFDQKTLFENIHNATKEDGY IIWRSPIVCGYGAGCFVYMPNKILQLGFCNSYLYRGAWIHRQIVGNDTCYDVQKFENGSA YNFLDHLKDYVTFQRNKNSGEYVLRLTIVFKKLGRGGGAFISPFFPYTTSQEAIVRNAKM VLLNCFPKICLGKIVIFGTGEAARLAYLFADKAGLEVEYFVDDFKKGEFCKRSIIKWEEF VERQSEYDFLLCGPYQQGNILQRSSKIPIRFLKMEWFV >gi|197282987|gb|ABQU01000063.1| GENE 9 6041 - 6754 379 237 aa, chain + ## HITS:1 COG:no KEGG:BB0128 NR:ns ## KEGG: BB0128 # Name: wbmS # Def: hypothetical protein # Organism: B.bronchiseptica # Pathway: not_defined # 2 237 20 252 256 192 43.0 9e-48 MFGKISEIDINDTQSFQKIFLTFDIDWASDEVLEYCLEIVEKAKVKATWFATHKTPLLKR ILENPLFELGIHPNFNPLLEGNFCYGKNYKEVLEYYLEIVPNAKVMRSHSLAHSSRILIE AKNLGITHESNICIPCVAFEDGGGGALLPYLNWDGLIRCPYHWADDIACMYKNKINIKDI RRDKYFVFGFHPIHIYLNTESLERYEIAKAFTFNIDKLKSHANHSNFGSLNYLEQLI >gi|197282987|gb|ABQU01000063.1| GENE 10 6859 - 7860 690 333 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309479|ref|ZP_04808634.1| ## NR: gi|242309479|ref|ZP_04808634.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 333 37 369 369 642 99.0 0 MCSRPFGFPLLDDTSSKEEFLKTLMSKTTIASSNGRWPNIETQTLAEVFPDKMSLNNLVI GNSAVESAVRTIHNILGIKMPQDKKYYCLHDDHSYMLGGEIFIHFEGRVLNTIRNPMDMI ASKKNMLTMYVYGKENPQNFTLKKEVIQDELIRAYFSWWVASYEYSKGRLLPVFYPLLKS QKIRKQTMEKVGQFLGLEFHNVWLEEKNILDKEKYYNELLANGSSLSTVEYLSSGKLSQD SFGATSYFSLNNEEIELLERLIEYRFIERYKEFEVFWREFDLFYQECFIGEERSKKIFEK WVDMYKNNKFKALFNEYSSMNYGKVNANMAFKK >gi|197282987|gb|ABQU01000063.1| GENE 11 7988 - 9142 629 384 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309480|ref|ZP_04808635.1| ## NR: gi|242309480|ref|ZP_04808635.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 384 21 404 404 759 99.0 0 MVRYLHDEGYDADLFVCNNELHHFSPSCDTYSLDFMNYTYKLPFGNLYWFLNEIEKIKND PIIEQIKQYDIIFANGPSMAYLEFLGIKVDFFVPYGMDLVDYPFFVSSANPNHRQHLDAF SALQRQSIMRSSYILSTEDILGIKEYKDSIIKLESISKVITFRTFPYIYEKIYRKNTIVN FFNCSYWYRDFLKFKEESQFIIFHHARHTWKSSKGQLSDKGNDKVFKALAFLLKEIKKLN PKILTFEYGDDYLDTKKLTYELGIEKYVQWLPLMNRKDIMVGLYCADIATGQFNVGCMGG GVQTEALVTSTPLVHYINENKYNLAELYSFIQARDAFEIADSFANYLANPKKYQKMAEEA NKWLQEEMYQAIYKICDLIEEVKK >gi|197282987|gb|ABQU01000063.1| GENE 12 9181 - 10684 588 501 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLIYSIIIVVSYLVFLLIVRSMNYPYGGTDHAYHYRLAHYIKSNHHYLVKEFPYWIPFSV CPQGYHWVCSFLDRRYLLQKANVINYVIFALTLLVFNGFIILIDDFSVLEIVLIDGVFVT LPIMYVVWNAKFMGLSARAFGIFLVYLYLFCFYFYFVDGTLVAFLLLLFFSFLCLLSSQF AFQFVCFSSIFFFVVTFDFKVLLIIPLDIALLFVLNFQYAKNFFYSQFHHKRNYFKFMIK DCQFKSRYSIWRDFIYDFWVKKDKSYILSNPVIEILIGALPNCLVLVYFPFSEVINDNKA QILYILLSASFFAFFMTSFRIGRFLGEPQRYIEFGIPFASILGVLVFPSWWVIVFIILNV FVLCWYIKNSQYHRQLPEHIKIREELIDYVQGIFNYEYSHLLSNDNEIARHFYVSNYEPH VPNHCKYYKDREEFLLSYYKGDYHRISPQFLASEMKRCQKGILILYVNLLKFYDESEILP LLDGIKMEHLRDIGKFKVFRF Prediction of potential genes in microbial genomes Time: Tue May 24 02:41:55 2011 Seq name: gi|197282986|gb|ABQU01000064.1| Helicobacter pullorum MIT 98-5489 cont2.64, whole genome shotgun sequence Length of sequence - 50259 bp Number of predicted genes - 52, with homology - 49 Number of transcription units - 5, operones - 4 average op.length - 12.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 951 819 ## COG2896 Molybdenum cofactor biosynthesis enzyme 2 1 Op 2 . + CDS 971 - 2452 1037 ## COG0535 Predicted Fe-S oxidoreductases 3 1 Op 3 . + CDS 2471 - 4357 1087 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) 4 1 Op 4 . + CDS 4345 - 5931 729 ## CFF8240_1624 hypothetical protein 5 1 Op 5 1/0.000 + CDS 5978 - 7081 494 ## COG0438 Glycosyltransferase + Prom 7142 - 7201 8.1 6 1 Op 6 . + CDS 7222 - 9003 1335 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) 7 1 Op 7 . + CDS 8987 - 10102 342 ## gi|242309487|ref|ZP_04808642.1| predicted protein 8 1 Op 8 . + CDS 10095 - 11096 794 ## CHU_3215 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase 9 1 Op 9 1/0.000 + CDS 11112 - 12065 816 ## COG0673 Predicted dehydrogenases and related proteins 10 1 Op 10 9/0.000 + CDS 12065 - 12646 565 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 11 1 Op 11 . + CDS 12643 - 13746 791 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 12 1 Op 12 . + CDS 13743 - 15170 920 ## gi|242309492|ref|ZP_04808647.1| predicted protein 13 1 Op 13 . + CDS 15171 - 16850 1182 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) 14 1 Op 14 . + CDS 16847 - 17926 1052 ## COG1817 Uncharacterized protein conserved in archaea 15 1 Op 15 . + CDS 17920 - 18984 943 ## COG0673 Predicted dehydrogenases and related proteins 16 1 Op 16 . + CDS 18963 - 19595 278 ## COG0223 Methionyl-tRNA formyltransferase 17 1 Op 17 . + CDS 19690 - 20145 500 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 18 1 Op 18 . + CDS 20135 - 20803 480 ## COG4122 Predicted O-methyltransferase 19 1 Op 19 . + CDS 20776 - 21894 923 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 20 1 Op 20 . + CDS 21878 - 22402 559 ## COG0529 Adenylylsulfate kinase and related kinases + Prom 22405 - 22464 6.5 21 1 Op 21 . + CDS 22485 - 22619 142 ## + Prom 22683 - 22742 7.1 22 2 Tu 1 . + CDS 22771 - 24294 1007 ## Cj1421c putative sugar transferase + Prom 24296 - 24355 12.9 23 3 Op 1 17/0.000 + CDS 24377 - 25156 808 ## COG0500 SAM-dependent methyltransferases 24 3 Op 2 . + CDS 25201 - 25974 651 ## COG0500 SAM-dependent methyltransferases 25 3 Op 3 . + CDS 25958 - 27502 1116 ## CFF8240_1621 hypothetical protein 26 3 Op 4 1/0.000 + CDS 27505 - 29829 1642 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase 27 3 Op 5 . + CDS 29820 - 30440 475 ## COG2071 Predicted glutamine amidotransferases 28 3 Op 6 . + CDS 30449 - 30925 372 ## gi|242309507|ref|ZP_04808662.1| predicted protein 29 3 Op 7 . + CDS 30922 - 31887 862 ## Arnit_2936 CDP-glycerol:poly(glycerophosphate)glycerophosph otransferase + Prom 31944 - 32003 3.8 30 4 Op 1 . + CDS 32038 - 32796 483 ## COG1213 Predicted sugar nucleotidyltransferases 31 4 Op 2 . + CDS 32796 - 33638 737 ## COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase 32 4 Op 3 . + CDS 33708 - 35930 1875 ## COG0550 Topoisomerase IA 33 4 Op 4 . + CDS 35934 - 36335 403 ## COG5015 Uncharacterized conserved protein 34 4 Op 5 2/0.000 + CDS 36350 - 37189 655 ## COG0502 Biotin synthase and related enzymes 35 4 Op 6 . + CDS 37235 - 38044 799 ## COG1295 Predicted membrane protein 36 4 Op 7 . + CDS 38092 - 39417 1581 ## COG1253 Hemolysins and related proteins containing CBS domains 37 4 Op 8 . + CDS 39418 - 39603 124 ## 38 4 Op 9 . + CDS 39612 - 40106 553 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 39 4 Op 10 . + CDS 40115 - 40600 589 ## WS2120 hypothetical protein 40 4 Op 11 . + CDS 40617 - 41546 574 ## COG1578 Uncharacterized conserved protein 41 4 Op 12 . + CDS 41540 - 42841 1145 ## COG2056 Predicted permease 42 4 Op 13 . + CDS 42852 - 43793 1000 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation + Term 43823 - 43856 1.5 + Prom 43835 - 43894 13.6 43 5 Op 1 12/0.000 + CDS 43963 - 45429 1146 ## COG3278 Cbb3-type cytochrome oxidase, subunit 1 44 5 Op 2 9/0.000 + CDS 45441 - 46124 869 ## COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit 45 5 Op 3 9/0.000 + CDS 46127 - 46345 253 ## COG4736 Cbb3-type cytochrome oxidase, subunit 3 46 5 Op 4 . + CDS 46346 - 47227 1136 ## COG2010 Cytochrome c, mono- and diheme variants 47 5 Op 5 . + CDS 47240 - 47443 315 ## HH1260 hypothetical protein 48 5 Op 6 . + CDS 47446 - 47556 188 ## 49 5 Op 7 . + CDS 47558 - 48139 482 ## WS0184 hypothetical protein 50 5 Op 8 . + CDS 48139 - 48624 509 ## WS0185 hypothetical protein 51 5 Op 9 . + CDS 48690 - 49217 461 ## Bmur_0241 protein of unknown function DUF308 membrane 52 5 Op 10 . + CDS 49256 - 50258 1102 ## COG1748 Saccharopine dehydrogenase and related proteins Predicted protein(s) >gi|197282986|gb|ABQU01000064.1| GENE 1 1 - 951 819 316 aa, chain + ## HITS:1 COG:MJ0824 KEGG:ns NR:ns ## COG: MJ0824 COG2896 # Protein_GI_number: 15669011 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Methanococcus jannaschii # 3 145 12 145 298 67 31.0 3e-11 SEINIATTNVCNLKCIMCKLHNPDLKKTHKTQFFSRKQFLDEKIVYSILDYAEKKNVANV AFTAAGEALLDHRLVDFIAYAKDKNIPLISLVTNGVLLEDKGIDLLNAGLNRMTISIDGA TQETYRKIRGTDLEKVERGVRKCVEYARQINSDGGKIEFELACVLVFDDMSETQHKELYL SKWKDCRDVIKRITFNELAVFDEEGYETRNNATIDVASRMNCMYPYQRMMIDPYGAVSVC CTMSSSAYHKPYSVGNVYQNDLEEIWVSKEMSILRKENILVKFNNFDICKKCSEWAFNAF DIESQVNAKEKTISFT >gi|197282986|gb|ABQU01000064.1| GENE 2 971 - 2452 1037 493 aa, chain + ## HITS:1 COG:AF2009_2 KEGG:ns NR:ns ## COG: AF2009_2 COG0535 # Protein_GI_number: 11499591 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductases # Organism: Archaeoglobus fulgidus # 176 387 4 198 366 63 27.0 1e-09 MECIILKLKGIIVEQNVLEKLGLKVKSEIEVVDFFDMQTYIAINDARKDRSPIFGVFYQA RGEGAIIEEFLKKALKKKENFYYYPKPNEFFQIDRLGLFWLFKPKNIEKLFIEILYKNNL FSKEIRNRIHRFNAEKFNYRNRRIALEGRLLSNLSDEWELFENEEVKQYDLINRVKEFYP APLHINLGTINRCNLKCSFCFFFAPHYKKTHTTDFFKEYKILDEKIVYEIMDYAAKYHSM IDLVGPCEMLLDKRIPDFIRYGKEKGVGYISMTTNGLLLDKEMTQRILQSRLDSLSISID AGTKETYKEVRGGDFDKLVKNVEYFLTEVENQNIKMYISLSIILQKEAYNEIELFKEKWS KYKVVNEFYVRNLIEKENEGMEVIHKDNHQCHKRIVCQKPWDEIHVNPDGGVMPCCTMST SVGWDNTNLGNLYENTMEEIWNGERARELRKDLIRGEFEQWKICKKCKEWSYYSIEKDNG DIISPAIEFVKVN >gi|197282986|gb|ABQU01000064.1| GENE 3 2471 - 4357 1087 628 aa, chain + ## HITS:1 COG:mlr6755 KEGG:ns NR:ns ## COG: mlr6755 COG0367 # Protein_GI_number: 13475635 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Mesorhizobium loti # 31 625 33 645 665 279 31.0 1e-74 MCRIVGGFEVNSQGCLKNNIELMRDSMISGGPDDYGIFVDEGEGGSILGHRRLSIIDLSN YSHQPFCDDRYSLVFNGEIYNYQEVAVKLGIEGIKCNARSDTEVLLASFKHWGVSCVEYF DGMFAFVIFDSLEKKLYLFRDRFGVKPLYYYHDSNCFLFSSELKGLLAYPKLQKKICKTA LSYFFELGYIPAPYCILENTYKLESGCYLEVNLKQARRFGILQAIVKNRYYDIANFYKQK RQFSLVAFREVLYKSVSLRMISDVDVGVCLSGGVDSSLVCAVLKDAGYSFDTFSISFLEA SYDEGHYAEEVARVLGVKNHRFACHLKVAQEIIPTLSFIYDEPFGDSSAIPTLLLAQSIK KTHKVALSADGGDELGFGYDRYFWAFNRYQKYKKYKNFSFVMKLFEPQLAVSFLQSLGIN IGIDKFLRIKEQLCSQSFLEHYLIEITHFRKNGLKVNGLPFLLWDQFNNQNKMDNFKQMS YFDICNYLSEDILTKVDRASMSVGVEFREPLLGKELVEFMVSLEAGDNLILENSKIISGK RIFKQFLEKFLPKNLIYRPKMGFGVPLEEWMRGELRGLLQEVLPYAQGFLNEEFIKSLVD TFDARGRVDFAKIWYLYVFCAWRKEWNI >gi|197282986|gb|ABQU01000064.1| GENE 4 4345 - 5931 729 528 aa, chain + ## HITS:1 COG:no KEGG:CFF8240_1624 NR:ns ## KEGG: CFF8240_1624 # Name: not_defined # Def: hypothetical protein # Organism: C.fetus # Pathway: not_defined # 275 521 217 464 472 80 28.0 1e-13 MEYLKKYEQIELLDYCYIYPNGGCAEILLRILKEVYNNVEFRVIDDGKKESSLQNNLEEI KSSQKYILLMGGDIYGELEAKCVKFGITRLIDAREYVAFLLGREILALSVGGGGRFELLE DRILHIFEDKWIKHCYYFYDLFTYYCSKIALEELRQCVLQYCNAILKNLKKIGYSLELQK GIMFDFAPHTLEIISHFVDSVKVSWYFGSLEYYLQHKDKVKNQFILIAPWIIADYFMNYQ VVLKLSGGFPILNLNKRQIVGIGHSLAEAFALAPRAIKKSNLFQYAYYYFYPFSHYCAMD EKSYQAFMKIFNELELEIEVCKSGSPRLDYKIQTKKMHQSLIEQYLFIPRLMKAEELKGA ISFLLQKGKKVIFRPHPALKNYTKYMKNGNPYNMLEEFRNNPNFSFDFSSTLSYELLVES IVVTDNSSVSYSTPLSVCKPVILYAFPKKEFDLRKKNFGVSFFNPILHRVALDLEGFKQE VLKLEEDLKNSGNQILEELRQYRNSQVYNLGYSSKWLANFLEKLLKKD >gi|197282986|gb|ABQU01000064.1| GENE 5 5978 - 7081 494 367 aa, chain + ## HITS:1 COG:Cj1127c KEGG:ns NR:ns ## COG: Cj1127c COG0438 # Protein_GI_number: 15792452 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Campylobacter jejuni # 14 358 14 361 365 112 28.0 8e-25 MKIVFVIDVMRKGGGAQKVISILLPILQNNGFFVELIVLKKTTQLLEIPNIKRHYILCNE SQSLVSNSFFILEQMTQIAKDADLICSFMDFATSYFVGLSAKILLKPYYVFVRCEPSYVV KTFSQAMINQKLYSLCLQGAQKVICNSNSSLRDIVENFGVKEEKGEVLYNPIDFRSLEIL ANRGQKIQRVDKEIICVSVGRLHSQKNYHILLEACRVLQERRENIRFFIIGEGELRTELE NKKKEYNLVNLEFLGYHANMYGFLKSADIFLHLSATEGFPNAVLEAASFSKPLILSNIRP HREVFEKNALFFEVDDVEGLCECIKAMEDEEVREHFSLTARQCVESFSYERFEKEVLEEF RAFGKPS >gi|197282986|gb|ABQU01000064.1| GENE 6 7222 - 9003 1335 593 aa, chain + ## HITS:1 COG:BS_asnB KEGG:ns NR:ns ## COG: BS_asnB COG0367 # Protein_GI_number: 16080106 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Bacillus subtilis # 7 547 1 572 632 229 28.0 2e-59 MFERILMCAIAGIYGESDISKINTMLYLMQKRGPDGMYSFCESNFVAGMNRLSINDIGNG RQPFYNEDLSIVVLFNGEIYNYRSLKRELEQKGYVFRGHCDGEVLPFLYEQYGLESFSYL DGMFGIMVYDKRKEEIILARDGMGEKPLYYVKKDKQFAFCTLIQPLKQYFGNFSLNSRAL WDFFTFGFIPEFQSVYEGVNAVKKGCCLIFNCKNGECREYNFWEKSLQNFSISTKEMKQD EDLVHFTREIVSKSIRDRLLSDVPIGAFLSGGLDSSIVTTIAQKSLGKLKTFNIAFLDDY DPYCGFANESEFADLIAKNIHSEHFTIAVDARDYQKMLVEFIKDIDQPFGAISGIGIKII AKKARELGIKVLLSGDGADENFGGYSWYPKLRFNNTKFITEQKPKGWHYYAFESEKQDFL NREFFGSLDSRVYFPKTNDNPIGFIEFDREFYLPNEMMVKLDRMCMSESIEGRAAFVSPQ IVSFVKKINYEKLLQNGEKWLLKEAFKEILPQTILQRQKHGFNPPVDYWMKNEWLNLLRD ILSKDSSLYQAGIINADSYDKFMKIFYSNDRRVGNIAFYLLVLGMWLDNENYK >gi|197282986|gb|ABQU01000064.1| GENE 7 8987 - 10102 342 371 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309487|ref|ZP_04808642.1| ## NR: gi|242309487|ref|ZP_04808642.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 371 1 371 371 719 100.0 0 MRIINNQDNILIFADLTSPLMQPRIMMLKELPYNKFILHNANNAIINDSVIEEYKGFTIL QHPKIFLLKIRYLYSFFYTLYLLLKLRPKLIVVHWASRLYQNLLLSLWGNRVIVHTMGGD IDDKQDYHGKKKFFVDKLLKSCKVISVKSNFMRFIIQKNNAKIDLTKIVHISWGVSECFL KKSSPQDKIQMQYRLFGREFECLFFSIRAFDPFYRQMEIIKTFLDLFADNPKVGLIVSTS RKREDYYSEIFKKINLNIFLCDIPHFEMQKYILASDCIVSFAKSDGLPQSIMEGLAMDKW ILCNNLPNYCELLNQDNAILFDDVDGLSRGYSRILEVKENKPKKHKGIELILNSNLQKQN YLKILKENFNV >gi|197282986|gb|ABQU01000064.1| GENE 8 10095 - 11096 794 333 aa, chain + ## HITS:1 COG:no KEGG:CHU_3215 NR:ns ## KEGG: CHU_3215 # Name: not_defined # Def: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase # Organism: C.hutchinsonii # Pathway: not_defined # 44 320 29 302 320 200 40.0 7e-50 MYKGHLEFLVCPKCKGKLILESLEENKEFVKEGSLECKKCKKSYKITRGIVRFVSQSNYA DSFGFEWNMHKKTQYDSKSGVESSKKRFFEESRWHLATDNENYVILEAGCGSGRFTPYAL EVCGEGGIVISFDYSNAVDASALSNPPSKNLLLIQANIFELPLKEKIIDKCFCFGVLQHT PSTKKAIKSLVATLKQGGEFVCDHYPFNKNTWFNTKYYVRPIAKRLPHSVLYNFGKKYIN FMWPIFKFNRRIFSEKRANRFNWRLLIPDYSSQGLDEEKLKEWAYLDFFDMLSPWYDRPI RMQTLHHYLQEAGLSEVQTNPGYNGWEGRGIKK >gi|197282986|gb|ABQU01000064.1| GENE 9 11112 - 12065 816 317 aa, chain + ## HITS:1 COG:PA3158 KEGG:ns NR:ns ## COG: PA3158 COG0673 # Protein_GI_number: 15598354 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Pseudomonas aeruginosa # 1 303 1 300 316 327 56.0 2e-89 MKKFGIIGIAGYIAPRHLRAIKETGNTLVCGLDPYDGVGIIDSYFPEADFFTEFERFDRH VDKLRRNGQGLDFVSICSPNYLHDSHIRFGLRSNADVICEKPLVLNPWNIDALEDIERES GRRVYNILQLRLHPSIMQLKNRVEEALRVNPDKIFEVDLTYITSRGKWYFVSWKGDIAKS GGVATNIGIHFFDMLLWVFGGVKTSKVNLLDAQSASGILELQNARVRWFLSVDSETLPKE VRMQGKRTYRLIKLDSEAVEFSEGFTDLHTESYNKILGGKGFGLKEARDSIELVHQIRNA EVIGLKGDYHLFCKKVL >gi|197282986|gb|ABQU01000064.1| GENE 10 12065 - 12646 565 193 aa, chain + ## HITS:1 COG:PA3156 KEGG:ns NR:ns ## COG: PA3156 COG0110 # Protein_GI_number: 15598352 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Pseudomonas aeruginosa # 1 181 1 181 191 214 54.0 1e-55 MDYFAHKTAIIDENVKIGKNCKIWHFSHILSGSVIGENCSFGQNCVIGPNIQMGKNCKVQ NNVSVYEGVICEEDVFLGPSMVFTNVINPRAFINRREEFKVTLLKKGCSIGANATIVCGI TIGEYAFVGAGSVITKDVPSFALVVGNPARQIGWIDKGGLRMEFDENGIAKDSYDGEEYC LKDGAIEVIRRNL >gi|197282986|gb|ABQU01000064.1| GENE 11 12643 - 13746 791 367 aa, chain + ## HITS:1 COG:PA3155 KEGG:ns NR:ns ## COG: PA3155 COG0399 # Protein_GI_number: 15598351 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Pseudomonas aeruginosa # 4 362 2 357 359 333 46.0 2e-91 MNKIDFANLKKAHIAHKKEIEEAILRVARNANYIMGEEVERLEEELVEFIGGGYAITCSS GSDALLLALMALDINQGDEVITTPFTFIATAEMIALVGAKPIFVDISLEDYNLDFNLIES KITPKTKAILAVSLYGQPPNLRKLEEIAKKYNVRLILDGAQSFGAEFMKRKDSLYGNITT TSFFPAKPLGCYGDGGAVFTKDKCLADRVASLRIHGQKQRYIHQYIGIGGRLDSIQAAIL RVKLRYFKGDIFLRQKVALGYQEGIKSAGVILPKVLEYRTSTFAQYTIRVKNREALREKL RAEGIPTAVHYPLCLHLQECFAFLGHSCGDFPNAELASKEVLSLPMNPYLEDGEIEYICK KINERVE >gi|197282986|gb|ABQU01000064.1| GENE 12 13743 - 15170 920 475 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309492|ref|ZP_04808647.1| ## NR: gi|242309492|ref|ZP_04808647.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 475 1 475 475 954 100.0 0 MKKVLIYGFGWTGQSMLQLCVKIGFECKVLDDNINLDFTQDDIFIDQKGITENFDIYFVC IINKESAKEAYNKLKDAGIPKVKIKFISTYDYKNKMAFLVREYFKEPSQVLKKWLEDDQS MTYFHSQMKAMLNEYYQIKKSNADSLLEWSNKIRSTMIGQTIFAKLYTSALIKSDLAHIA YPGFNIGISFEKKEDKNFYFVQKIDFEAIMQRPKDVKLVACFGNSALRVEYLPLEDTITA FLQKKLGKKYIVLNFGVTGYTIYEQMMLYNALVFPLKPEIVISCFGGTDWRTGIVSCEHL VKTHKMTYTPGFYEYAYKKVTKSELPLYSEIGNDRKAINNKILDDDVNEAIACRLRQFNL VTSGGGGAFYAFIQPLLPCKLKWTKEEKEMRDKERKLLEHTLAYQNEIIDNRILKYVAGL KDKIRDCDFVCDLNEIFHKSEESIFTNHWIHCNAKGNEMVAEKIFEVLKQKGIVG >gi|197282986|gb|ABQU01000064.1| GENE 13 15171 - 16850 1182 559 aa, chain + ## HITS:1 COG:PAB1605 KEGG:ns NR:ns ## COG: PAB1605 COG0367 # Protein_GI_number: 14521361 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Pyrococcus abyssi # 1 536 1 549 611 255 32.0 1e-67 MCSICGGNYPLELVRKASRTMVHRGPDFSGEFSDGVVALAHNRLSIIDLDSEANQPFTSP FCPHLVLVFNGEIYNYLEIKQELTKLGIPFFTQSDTEVLLHAFAYLGEKCLEKFNGDFAF CILDKRDSSLFLARDRLGNKPLFYYLENEKFFFASEIKALLQIKSFEFDLQEVSKWLLFG NGGENKTIYKGILNFPPAHFARFANGDLQIKKYWECVPCVDLNLGQDEALERLEEILGDA VRIRLRSDVAVALSVSGGVDSSILAHLANKMGAKCHYFGVNFKESNQDETKHIKQLQSDL GVEINYIAPTLENIKDDFLNLVQTQDEIFRSFSIYSQYLLFKSIAPFCKVVLGGQGADEL FGGYYHHIGRYIFSNPIEFENRIKLYGNEALREYQFGLKCSLRDSLKMQLFFEDNQGGIE KLKKMGFLIPSMENLLERFLLDFNQGLWLDTFRYNLPNLLRYEDRNAMAFGIENRTPFTD YRVVEFAFTLDSNLKFARGYSKYILRLLLEKMGSKELAWRKDKVGFSAPEVQLMQTLGYN YESLFDIRMMVFEGLRGRI >gi|197282986|gb|ABQU01000064.1| GENE 14 16847 - 17926 1052 359 aa, chain + ## HITS:1 COG:MJ0665 KEGG:ns NR:ns ## COG: MJ0665 COG1817 # Protein_GI_number: 15668846 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in archaea # Organism: Methanococcus jannaschii # 2 353 6 336 341 97 26.0 4e-20 MIWIDVATPKYAMFFASMIGDLQKRGHQVLVTTRYAPNYTEAKEILELHKIPHIVLGEYG GATLLEKFEARIFRQKEILDLFKARGVPKVLICGAVVDSVQVAYGIGIPVVNIYDTPAFT KPRDEECPKELTAVARLTLPFSKIFFYPFIFPKELILRFALDDNQIQSYPFIDVALWINK IQKDSKNDFRIRYGLDIKKPTILIREEEYKAHYVKEKIPTIYEVIPLLKAEMDANLVIMP RYEKERLKRDFGGIATILEEKLKPEEFYPFIDLFIGGGGTMNLEAVCYGIPTISTRSIWL VHDQYLIKNKLMFWSQDCKEIIEIAKAMLGKRVDSRSYFVQGECSFDVMIERIEREILC >gi|197282986|gb|ABQU01000064.1| GENE 15 17920 - 18984 943 354 aa, chain + ## HITS:1 COG:TM0585 KEGG:ns NR:ns ## COG: TM0585 COG0673 # Protein_GI_number: 15643351 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Thermotoga maritima # 2 340 3 343 360 249 39.0 8e-66 MLGVALLGCGRIAVRHAELLSKGEIEGAKLICVCDIDETRARKFGEKYKVPYFVDLESMM QECGEKIEIVSILTPSGLHAKNTLEVAPYKKHIVVEKPMALTLEDADKMIEACDRNGVRL FVVKQNRYNLPVQKLREALESGRFGKLVMGSVRVRWCRDNAYYKQDSWRGTWAMDGGVFT NQASHHIDLLEWMMGDVESVFAKSRTALSDIETEDTGVAVLKFKNGALGVIEATTATRPK DLEGSISILGEFGSVEIGGFAVNEIKTWNFQNTLESDKEVVEKYSTNPPNVYGFGHKEYY LHVIDSILHNKKALVDGLEGRKSLELIVAMYESIETGKEVFLRFQPKRCKLGHL >gi|197282986|gb|ABQU01000064.1| GENE 16 18963 - 19595 278 210 aa, chain + ## HITS:1 COG:lin1937 KEGG:ns NR:ns ## COG: lin1937 COG0223 # Protein_GI_number: 16801003 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Listeria innocua # 7 187 1 194 312 71 25.0 9e-13 MQIGAFMKKVVFLGAKKIGLKCLEEMFARQRELDFEIVAVGTSQRGVEIQEFCKKHLIKE IQSLDDLFELEFDLLFSVQYHLILTQAHIDCAREMAFNLHLAPLPEYRGCNQFSFAILNE DSEFGVTLHKMDSGIDSGDIVFERRFVIPKNCFVDELVELANQKGLELFREKLSKLINGD YLLKPQDECEAIRREFHYRNEIESLKCVDL >gi|197282986|gb|ABQU01000064.1| GENE 17 19690 - 20145 500 151 aa, chain + ## HITS:1 COG:mll2311 KEGG:ns NR:ns ## COG: mll2311 COG0110 # Protein_GI_number: 13472117 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Mesorhizobium loti # 19 146 37 151 196 71 35.0 6e-13 MFQSQIREVKMGANVKIVEPCNLYECELGDEVFVGPFVEIQKGVKIGAKSRIQSHTFVCE LVSIGESCFIGHGVMFINDLFENGGPARDSALWRETKIGNNVSIGSNVTILPVSICDGVV IGAGSVVTKDITKKGIYAGNPARLIREINDR >gi|197282986|gb|ABQU01000064.1| GENE 18 20135 - 20803 480 222 aa, chain + ## HITS:1 COG:SP0980 KEGG:ns NR:ns ## COG: SP0980 COG4122 # Protein_GI_number: 15900857 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 71 185 63 173 237 61 34.0 2e-09 MIDKIVETIEQRRNELKTQSQMVEVIDFGAGNPSDKRSKKQMEMGVKVEIPLRDLAKIGV KKEKAECIYTIFSSLAPKTILELGTCCRFSSSYMSFFAPNSKIYTIEGSPNIAEIAKENH RFFGLSNVSVFVGRFDIVLPKLLEEISPIDFAFIDGHHDREATLSYFKQILPFMAKGGVM LFDDIAWSEGMREAWREIVGFGVHKKIQEVGEEPWKMGVLWL >gi|197282986|gb|ABQU01000064.1| GENE 19 20776 - 21894 923 372 aa, chain + ## HITS:1 COG:alr3012 KEGG:ns NR:ns ## COG: alr3012 COG0399 # Protein_GI_number: 17230504 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 8 371 7 381 382 248 36.0 2e-65 MENGRVMAVKFLDLQKQYLSIKEEVDKAIFGVIEKSAFIGGEEVKAFEEEFSRFVGNGVG TLGVANGSDALEIALEALELPKGSEVLVPANTFAASAEAVIRNGLKIVFVDCGEDYTLDI VDLQSKITPQSSAIVVVHLYGQPAKMKEILELAEQYSLKVIEDCAQAHGAEYEGRKVGNF GDIAAFSFYPGKNLGAYGDGGAIVSRDLALLKKCECIAHHGGLRKYEHRIVGRNSRLDGI QAAVLRVKLGYLDTWNQRRREVARQYLEGLKGIVELPEIRQECKCVWHLFVIRTKNRNEL MQKLKEKGIEVGLHYPTCLPNTEAFSNKPYVVESKTPNAKAWESEILSLPMGEHLSDEEV KEVIKVVNEAIY >gi|197282986|gb|ABQU01000064.1| GENE 20 21878 - 22402 559 174 aa, chain + ## HITS:1 COG:Cj1415c KEGG:ns NR:ns ## COG: Cj1415c COG0529 # Protein_GI_number: 15792733 # Func_class: P Inorganic ion transport and metabolism # Function: Adenylylsulfate kinase and related kinases # Organism: Campylobacter jejuni # 12 174 7 169 170 207 61.0 1e-53 MKQYIKNGKGLVIWVCGLAGSGKSTIGFSLYEALKEKNPNIVYLDGDELRDLLGHYDYDK QGRIEVALKRSKFAHFLSEQGLIVVVTTISMFEEVYIYNRKTLENYLEVYIKCDLDELKR RNQKGLYSGALEGKIKNVVGIDIAFDEPRAEIVVDNNLQNNLEQKVENVLSLLG >gi|197282986|gb|ABQU01000064.1| GENE 21 22485 - 22619 142 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIRNANSAVERVRNQLSYKLGQAMIASSKAAVGGGGIIPHNLFI >gi|197282986|gb|ABQU01000064.1| GENE 22 22771 - 24294 1007 507 aa, chain + ## HITS:1 COG:no KEGG:Cj1421c NR:ns ## KEGG: Cj1421c # Name: not_defined # Def: putative sugar transferase # Organism: C.jejuni # Pathway: not_defined # 1 504 93 607 612 235 32.0 3e-60 MIEADKNWHKGGYLKLLSKIEKAKARHRAIQEVVRIIPKEKQEIIYCIELENRVQINCEK INRIFQAHKYYQPIIDNILHNFNYFLENFSEIESWLLSSEFHKRYKKEKHPYPSLINPKT ADYKNISAQLAWELNLPLPENYKFIYLYSHGAGGLHYSYFVGLVGLRIVRDFAMPSKSVI VDIYKSFYKALSENLEINYFIDFSDSKVYNEDANSANRVKFFSMLDQTKPLLYHVRDPLL LIRHLVVRHGRWHRHVMIKKQSFTLQDSFNDVFVERDKGYINQKVWIGFFSTLFVVRGHK ELLEMYPINQIQILDTQDLHKADIEEKIVGFLQKAKCKIPKESYHSTLSGNMFKGEAYLW LPLKLNVETVNKQKIEVNFIRKIFANQQDLVSLASKIDSYKRDDVYDICIKRDEMKILME DNQCYLKVLDYLEDFVGKIESLLDYIEQKLIIIDGVMDHLRNNTKDAMLLKHILEEETMF VKRYRPDIVESWKYYQEFLKICEEKGI >gi|197282986|gb|ABQU01000064.1| GENE 23 24377 - 25156 808 259 aa, chain + ## HITS:1 COG:Cj1420c KEGG:ns NR:ns ## COG: Cj1420c COG0500 # Protein_GI_number: 15792738 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Campylobacter jejuni # 1 259 1 257 257 391 76.0 1e-109 MKQGDFTKVAKHYHNRPAYSEMLLEKLVRCINDENKATKDLKVVEVGAGTGKLTRMLWDF GMQVLAVEPNDNMKEEGIKYTKETNIKWQKGSGEATGVESNFADWVIMASSFHWTDPKKS LPEFARILKTGMGGGGYFTAIWNPRNIVEGSVFDEIEKEIKHIVPELTRVSSGSQNAKKW EDILISTGHFKDCFFMECDYVEVMDKNRYIGAWKSVNDIQAQAGEKRWNQILSMIEKKID VFDKIEIPYKIRAWSVRKA >gi|197282986|gb|ABQU01000064.1| GENE 24 25201 - 25974 651 257 aa, chain + ## HITS:1 COG:Cj1419c KEGG:ns NR:ns ## COG: Cj1419c COG0500 # Protein_GI_number: 15792737 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Campylobacter jejuni # 1 257 1 253 253 437 82.0 1e-123 MQKIVEQVWDYTKHAKFYEFRPNYAPATIDMLVSLVQKNQNKEAIKVADIGAGTGNLSIM LLERGCEVVSVEPNDAMREIGIERTKGQKIEWVRATGIDSTLQKGEFDWVTFGSSFNVMD RVEALKEAHRLLKPRTYFSCMWNHRDLNDPIQKIAEDTIIEFVPHYTRGVRREDQRPIIE SHKELFDNIIYIEEDFYFHQSLENYIKAWRSVKNPYWDLETKEGEELFNKITDALKQRLP QELDIKYTTRCWSAKRV >gi|197282986|gb|ABQU01000064.1| GENE 25 25958 - 27502 1116 514 aa, chain + ## HITS:1 COG:no KEGG:CFF8240_1621 NR:ns ## KEGG: CFF8240_1621 # Name: not_defined # Def: hypothetical protein # Organism: C.fetus # Pathway: not_defined # 8 513 4 479 481 136 28.0 2e-30 MLKEYKNIYLYPNGEDAQAIYVILKNFKTLLNVGEINILDDAREETSLAHNHQRVKENGI LWIVHQDRKMYNILFQNAKNLPQEIVRNGIIELEEKLLVYLEKVEFAEIQKNSPNETLSF LNFASYFAMQFYLTLKEEGAFLSILKNLSKQTDLYFKGYFELLPKSVGIAVTTFGGNKHL GDIGDILEQKGVNVVYVYYDEKEFIKAQKQTGKNSIFCPIQLSYMGSFLNLFDLFVTCRM PLTSPSWGSSTIYVPHAFIDPIAALMQRKRTLDDFWFKKKMGINGYRIVPSFSNYQIYKD KFSECGYEKELVCGGYPSLDKNILEYGQMVRGRGRNILIAINHQESILIIKEFLARCQIN LKAKQKVYFRPYPGNILQEESEEIAKEYAKYSWFVYDTSKKLDAQIMQDSCCIIGDYSSL VYTFPLTTLKPAILLCRNKDDLENEYLGIKFYNPILHKVASNAKECFEKIQEILEENQQR REENIKEYRKKEVFNLGKSSEFIANFIIQKLEEI >gi|197282986|gb|ABQU01000064.1| GENE 26 27505 - 29829 1642 774 aa, chain + ## HITS:1 COG:Cj1418c KEGG:ns NR:ns ## COG: Cj1418c COG0574 # Protein_GI_number: 15792736 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Campylobacter jejuni # 3 774 5 779 779 930 61.0 0 MQKFISKAQNLKKLQGKLKSAKILPMVITSLKQFEEKQEILRDILCFETSKVIVRSSSKS EDSKENSNAGAFLSITNVPKQEKEIVGALQRVAQSMPNLDDEILIQPMLENVLICGVAMS VNKDTLAPYYCIEYDESGKTDSITDGSAKEKINFFCHREAPLPNNSQLKSIIMLLKELEN IFDYPFLDVEFAIDKQGEIYCLQVRPLVIQNKINLNQSLPLEALRRLQKRFLSLQKTTAD VYGKRTIFGVMPDWNPAEIIGLKPKRLALSLYKEIITDSIWAYQRDNYGYLNLRSHPLMH SFLGIPFIDVRLSFNSFIPKNLDTKIAAKLVEFYLDSLSNNPHLHDKVEFDIVFSCYDLN TPKKLQKLQKFNFNANEIKRIEFALLELTNNIIDPQKGLYLKDIEKIKKLRGIHKKIEEA DLSIIDKIYWAIESCKRYGTLPFAGIARAGFVAMQMLNSLVEIGFFSREEREEFLNSLKT ISKTLSCEVARLNLENKEEFLEQFGHLRAGTYNILSPRYDEAFEEYFDIKTNSNIAYKEE SRQPFELDSSKTKILEDLLVEHGLKIEAKEFLGFLKCAIEGREYAKFEFTRLLSYVLVLI GKLGDYYGISKEDMAHLDIKSILSLYASLYSKNPKERFLDEIKYHKEEYQLTLALKLPIL ITDSSEIFSFFETRIVPNFVTQKEVNAQVALHNDREVEGKIVLIKSADPGFDYLFAKNIA GLITCYGGANSHMAIRASELGLPAAIGVGEDSFERYLQAKRIRLDCQSEQIICL >gi|197282986|gb|ABQU01000064.1| GENE 27 29820 - 30440 475 206 aa, chain + ## HITS:1 COG:Cj1417c KEGG:ns NR:ns ## COG: Cj1417c COG2071 # Protein_GI_number: 15792735 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Campylobacter jejuni # 5 202 2 194 200 207 52.0 1e-53 MPLKFIGISQRLIENSNYFEIREALSLEWGEFFLQHLNGYLPLPLSYEIPFVEYAQRLNG TLKGIILSGGNDLNILNANQISQKRDEYEGQIITYCLEESLPLLGVCRGAQRVAEYFGAN FTRSDIHIGKHSIQNLTTYQKRIVNSFHNYCIEKIREPLYGIAFAEDSTIEAFRHKYKPI FGVMWHIERENGMCDASIFEEWKKKL >gi|197282986|gb|ABQU01000064.1| GENE 28 30449 - 30925 372 158 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309507|ref|ZP_04808662.1| ## NR: gi|242309507|ref|ZP_04808662.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 158 10 167 167 302 100.0 4e-81 MKVLYAPSKREYNDDLHGNVACGFDVMVLETLVGLEMLEVSYLPHIQTSLKIVKSIKDIF GDSIDYCKNAPKKIEVVVSDVSNMVFKYAFLTQKPSILCLFGFNGITYPANDKYYSMLES VTHNVYSLEELKKAFLEYSVIQKAKITKMQEFFRGTVI >gi|197282986|gb|ABQU01000064.1| GENE 29 30922 - 31887 862 321 aa, chain + ## HITS:1 COG:no KEGG:Arnit_2936 NR:ns ## KEGG: Arnit_2936 # Name: not_defined # Def: CDP-glycerol:poly(glycerophosphate)glycerophosph otransferase # Organism: A.nitrofigilis # Pathway: not_defined # 116 297 308 510 605 70 32.0 9e-11 MNVLQTIEQFIAQTKRTIEGYLSVERKNILIVSYYPTYRKQYGDLIKRLKEKYNVITIVD RILNDEFEKSGHYNVLFPWRIIENGQTFYLNADIQGIDLILSADQVGYEDGRIDRTFLST TAKRIYFPHSLIEATGASEVVDYILVPSKIAMESFQKTLKQSKVKLLKSGYPKLDKAIQD YCYQDSDTITYAPSLRYVSGDNANLNLFAGFENSVIEALLEYTSYNISYRAHPMNFQNNH SFYNLIKAKWQNEKRVKFDEKMGNDFCNTSEFLITDFSTTAFTFSFSTLRPSIFFAPLQL DTHLANYIPFVSMGGGGKYAA >gi|197282986|gb|ABQU01000064.1| GENE 30 32038 - 32796 483 252 aa, chain + ## HITS:1 COG:Cj1416c KEGG:ns NR:ns ## COG: Cj1416c COG1213 # Protein_GI_number: 15792734 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar nucleotidyltransferases # Organism: Campylobacter jejuni # 1 252 1 251 253 320 64.0 1e-87 MKALILAAGLGTRLMPLTKNQPKCMVEYQGKKIIDYEIEALWEAGIHEIAVVGGYLAEIL KEYLVQKYAIKTFFENSYFDSTNMVATLFCAREWIESCISQQDDLIISYADIVYSKEVVK KLMEIDTPFGIIVDKQWRKLWEKRFDNPLDDAETLKIREGKVIEIGKKAKSYQEIEGQYI GLIKFSYRFLPQVLEFYESLNRNVLHDGKDFHNMFMTSFLQGLIDKYNNALAVCIDGGWC EIDSKKDLEIRL >gi|197282986|gb|ABQU01000064.1| GENE 31 32796 - 33638 737 280 aa, chain + ## HITS:1 COG:aq_337 KEGG:ns NR:ns ## COG: aq_337 COG1218 # Protein_GI_number: 15605852 # Func_class: P Inorganic ion transport and metabolism # Function: 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase # Organism: Aquifex aeolicus # 4 265 1 252 268 162 36.0 5e-40 MQKLLYQVALVAMEAGRIALKYYGKGEFSLKSDSSPITQADLESNAFIMQSLQNLSSFEI CSEEAVLEYEKRRDLDYYWLIDPLDGTKDFLAQNGGWTINIALISNNRPILGVVYAPCFY ELYIALKGNGSYTFDAKLLKNAMESHLVDEVFLESHKIHLNGDRALEDKELVACDSNFHS TKETQEFLQKYHLKVRKYGSSLKVCALAKGEADLYPRFNGTSEWDMAACDIVLQEAGGEI LDCITKKPLLYNKENIRNNHFIAFAKSQVGGEIYRDFLQD >gi|197282986|gb|ABQU01000064.1| GENE 32 33708 - 35930 1875 740 aa, chain + ## HITS:1 COG:Cj1686c_1 KEGG:ns NR:ns ## COG: Cj1686c_1 COG0550 # Protein_GI_number: 15792989 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Campylobacter jejuni # 2 563 3 564 567 709 64.0 0 MKDLIIVESPTKAKTIKNFVGNNYEVIASKGHIRDLPKHTFGIKIDNQEFVPEYKIDESH KSVVNELKRLAKNSKTIYIATDEDREGEAIGFHIATAIGKDPLKLPRIVFHEITKKAILD SLKNPRYIDMDKVNAQQARRLLDRIVGYRLSPLISSKIQRGLSAGRVQSSALKIIVDREK EILNFKPITYYTIDIILKDNLEAELVEFSGEKIQKLSLQDKMRALEIVEKLKKAKFEVKE IENKKRKVSTPPPFMTSTLQQSASSILGFSPSKTMQTAQKLYEGVMTHKGSMGVITYMRT DSLNIAKVAQDEAREFIDKNYGKKYIPNKPKNYATKAKGAQEAHEAIRPTLIDFTPQVAA QYLKGDELKLYSLIYNRFLASQMNDAEFELQNIFVASGESLLKISGRKLIFDGFYRVLSN EDKDKLLPNLKIGETLELEKCGASEHQTEPPARFSEASLIKTLESLGIGRPSTYAPTISL LNSREYIKIEKKQIKPQEVAFKVVELLEKYFLEIVDSKFTASLEEKLDEIAENKQDWQKL LWDFYEPFIQKVNEGKTIIQSQKVAIPTGEICPLCGKELIKRSGRFGEFVGCSGYPKCKY IKKETEINQESNEDYGVCEKCGKPMLKKYGKNGEFLACSGYPDCKNTKALNPISNTKKAI EGVKCPKCGGEILERMSRRGKFYGCGNYPKCDFISTYEPTNIHCPKCDSLMAKRLYRKKP ILECIACKERIEDTENETKE >gi|197282986|gb|ABQU01000064.1| GENE 33 35934 - 36335 403 133 aa, chain + ## HITS:1 COG:Cj0436 KEGG:ns NR:ns ## COG: Cj0436 COG5015 # Protein_GI_number: 15791803 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Campylobacter jejuni # 3 132 5 135 136 127 45.0 7e-30 MTQEILDFLDENVTFLATKGTCGNPRVRPIKSALYKNGKLYFCTSNQKGMYKHMQNFAGV ELSAFDGKDKWIRIRGEVKFDDDLALKEAMFEKYPTLENIYQNPKNPNFVVFYLENVSIK IQDFGGREEILKY >gi|197282986|gb|ABQU01000064.1| GENE 34 36350 - 37189 655 279 aa, chain + ## HITS:1 COG:jhp1298 KEGG:ns NR:ns ## COG: jhp1298 COG0502 # Protein_GI_number: 15612363 # Func_class: H Coenzyme transport and metabolism # Function: Biotin synthase and related enzymes # Organism: Helicobacter pylori J99 # 1 278 1 281 282 363 61.0 1e-100 MSDIFLCTISNISSGSCAEDCAYCTQSAKYNADIERYRLKPIEQIVFEAKEAAKNGALGF CLVTSGRNLDDKRVEYVSKAARAIVAEGLHLHLIGCNGIASKEALKELKDSGIASYNHNL ETCKNFFPKICTTHSFDERYQTCENALEVGLGLCSGGIFGMGESWQDRMDLLYALQTLNP HSSPVNFFIPNPALPLTQEVLTRQEALECVKLAREYLPNARLMIAGGRERVFGEDQKELF ECGINAVVLGDYLTTKGNKPKEEVERIKSYGYGIATSCE >gi|197282986|gb|ABQU01000064.1| GENE 35 37235 - 38044 799 269 aa, chain + ## HITS:1 COG:Cj1212c KEGG:ns NR:ns ## COG: Cj1212c COG1295 # Protein_GI_number: 15792536 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 15 256 15 252 268 135 40.0 1e-31 MILLSKHLYIFLKGDLLYFAASLSFYTIFALLPMLLIVFSLVAALPEFKEYLESFKNLVI TNFLPTYSDVFLEYMDSFLANSTKLGGMGLFYAFVTSILFFKNYQFIAGKIFHTKPRGFW DSLAVYWTCMTLFPVGILFSIYLSAKAYAYLDILGYKDFMLWLFRITPYLVTWAIFFVLF KISANVYISTKNTLLSSLFTALLWSLCKWGFVYYVFYNKAYLTLYGSFSILLFLFIWVYL SWAILLFGMSLSRGINEVFIKELEKEIQE >gi|197282986|gb|ABQU01000064.1| GENE 36 38092 - 39417 1581 441 aa, chain + ## HITS:1 COG:jhp1383 KEGG:ns NR:ns ## COG: jhp1383 COG1253 # Protein_GI_number: 15612448 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Helicobacter pylori J99 # 4 434 5 434 441 506 61.0 1e-143 MEVDSILLSILALFLVLLNGFFVLSEFAIVKIRRSRLEELVKREVPSAKLALKITGKLDS YLSATQLGITLSSLGLGWIGEPAVARLLEVPFKYFIGENPVLLHSVSFVIAFSFITLLHV VVGEIVPKSIAIAKAEKSVLLVARPLHWFWIVFYPVIKIFDFIAAMILHTINIKPASEGE ESAHSEEELKIIVGESLKGGYLDTIENEIIQNAVSFSDTMAKEIMTPRKDMICLYDDNSY EENMQIVTTTKHTRYPYCKEGKDNIIGMVHLRDLLETMLSENPSRELEKLVREMIIVPES ASISNILLQMNRRQIHTALVVDEYGGTAGLLTMEDILEEVIGDISDEHDKKSEDYHKIDE DTYSFDGMLDLERVADVLGISFEEDTEQVTIGGYVFNLLERMPVVGDVISDEFCEYEVLA TEGARIVRIKARKKPFEMDEE >gi|197282986|gb|ABQU01000064.1| GENE 37 39418 - 39603 124 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTELFFVGLQLLLIALKLTNKIQWSWWLVLLPAFLYLFFYLFLFVLVGGFLIGIGVGLST I >gi|197282986|gb|ABQU01000064.1| GENE 38 39612 - 40106 553 164 aa, chain + ## HITS:1 COG:Cj0702 KEGG:ns NR:ns ## COG: Cj0702 COG0041 # Protein_GI_number: 15792051 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Campylobacter jejuni # 1 164 1 164 164 172 65.0 2e-43 MEFVAILMGSKSDYEVMSECISVLKKFDVSYEVVISSAHRSPNRTKEYVKQAEQKGAKVF IAAAGMAAHLAGAVASMTTKPVIGVPLKGGALDGLDSLLSTVQMPSGMPVATVALGKTGA VNSAYLAMQILALENAELEGKLREDRVMKAKNVELDSQDIEVIL >gi|197282986|gb|ABQU01000064.1| GENE 39 40115 - 40600 589 161 aa, chain + ## HITS:1 COG:no KEGG:WS2120 NR:ns ## KEGG: WS2120 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 156 1 155 162 155 57.0 5e-37 METWVKIEEFSTLANLTREKILEMVANGELKGKQENGEFMIDAGSGTKAVVHTTGNAVMV ENHSGGVDSEFVEKTIGTILSLHEKVMSAKEETILSVKSENQFLKDALFNTQEVYEDDKK TIALLREQLKVAQEEIEFLKRKYKMMWGKVVDSKPKEGIED >gi|197282986|gb|ABQU01000064.1| GENE 40 40617 - 41546 574 309 aa, chain + ## HITS:1 COG:PH1575 KEGG:ns NR:ns ## COG: PH1575 COG1578 # Protein_GI_number: 14591354 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pyrococcus horikoshii # 58 298 50 281 287 108 31.0 2e-23 MECLAKQAIRTAKNVDFCEIELIGQESKKVLGNYQKEVLAFFAEKFGIVFGEDIEIPPTL LAVVLYDKISQVLQNNAPYSEIKKQSIRKARKIKEKLLERMALMPKEDRLAFAISCAVLG NVIDYGAEHSYDIEEESNKIFHTDFAYFHLEALLERLRETKKLVYIGDNAGENELDEILI EVLKDCYPQMQIFYFVRGMEIINDITLNDLKNSHSRLFALCEVVDSGVPSPGFIYPLANV QSQTIFKEADLVFAKGMGNFESMEKIAREDSRIFFLFKIKCNVIADYLNKKLGELVLLSP YILHKGLVC >gi|197282986|gb|ABQU01000064.1| GENE 41 41540 - 42841 1145 433 aa, chain + ## HITS:1 COG:HP0758 KEGG:ns NR:ns ## COG: HP0758 COG2056 # Protein_GI_number: 15645377 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Helicobacter pylori 26695 # 3 433 9 436 437 434 55.0 1e-121 MLTNPVVVSILVMSVLCLAKLNVLLAILISALVAGVMAGLGVEKSIDTLIAGMSGNLETA LSYILLGALASAISKTNLTPILIHYIANFIQNRRLMFCLFIAFFACFSQNLIPVHIAFIP ILIPPLLPLMNRLKIDRRAVACALTFGLKAPYVSFSVGFGLIFHTILRDQLVQNGVNVSL NDISSVMWIGGVSMLVGLLLAIFVFYKKPREYQNTFLEENVLKHLDNPKMQKQDYGVLFG AIVAFVVQIVEGSLPLGGLAGLLVMIVFGAIKWSNVDIVMEDGFKMMSFIAFVMLVAAGY GNVLKETGAIESLVEAASSLSGGQFGGALMMLLIGLLVTMGIGTSFGTLPIIAAIYCPLA LKLGFSAEAIILLVGIAGALGDAGSPASDSTLGPTSGLNADGQHNHIWDTCVPTFLAYNI PLLIGGMIGAMLL >gi|197282986|gb|ABQU01000064.1| GENE 42 42852 - 43793 1000 313 aa, chain + ## HITS:1 COG:Cj1443c_1 KEGG:ns NR:ns ## COG: Cj1443c_1 COG0794 # Protein_GI_number: 15792761 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Campylobacter jejuni # 5 204 4 203 205 291 74.0 1e-78 MQDFIEIAKEVFEIESEAILELKGQLSEDFNAVVECILKLKGHCVITGMGKSGHIAEKIA ATLASTGTPSFFLHPGEALHGDLGMLTKEDAVIAISNSGESEEILRIIPIIKKREIPLIV MSGNPKSTMAKEGKYFLNVAVKKEACPLQLAPTSSTTATLAMGDAIAVALMKARGFKPEN FAMFHPGGSLGRKLLTQVKDIMVSKELPIVNLETNFKDLITEMTSKRLGVCLVLDNGRLV GIITDGDLRRALMDDKFDSNAAEIMTKQPKTIQSDAMATQAESLMMESKIKELVVMEGEK VVGIVQLYEVGRI >gi|197282986|gb|ABQU01000064.1| GENE 43 43963 - 45429 1146 488 aa, chain + ## HITS:1 COG:HP0144 KEGG:ns NR:ns ## COG: HP0144 COG3278 # Protein_GI_number: 15644773 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cbb3-type cytochrome oxidase, subunit 1 # Organism: Helicobacter pylori 26695 # 1 487 1 487 488 714 76.0 0 MQSNPALEYDYSIAKLFLFATIVFGIVGLLLGVIIAFQMAFPNLNYLAGEFGTFGRLRPL HTNGIIYGFTLSGIWAAWYYLGQRVLKISYNEHPFLKFIGYLHFVLYIVLMALAVVSLFA GLTQSKEYSELVWPLDLLVVVVWVLWGVSLFGSMGVRREQTIYISLWYFIATFVAISALY IFNNLSIPTYLVSGVGSVWNSISLYAGTNDAMVQWWFGHNAVAFVFTSGIIGVIYYFLPK ESGQPIFSYKLTLFSFWGLMFVYIWAGSHHLIYSTVPDWMQTMGSIFSVVLILPSWGTAV NMLLTMKGQWHQLKESPLIKFLILASTFYMLSTLEGPIQSIKSVNALAHFTDWIVGHVHD GVLGWVGFTIIAACYHMTPRLFKREIYSKKLMDIQFWIQTIAIILYFSSMWIAGITQGMM WRATDEFGSLAYSFIDTVTVLFPYYTIRAIGGTMYLIGFIIFTYNIIMTIVASRELEKEP NYATPMAA >gi|197282986|gb|ABQU01000064.1| GENE 44 45441 - 46124 869 227 aa, chain + ## HITS:1 COG:jhp0133 KEGG:ns NR:ns ## COG: jhp0133 COG2993 # Protein_GI_number: 15611203 # Func_class: C Energy production and conversion # Function: Cbb3-type cytochrome oxidase, cytochrome c subunit # Organism: Helicobacter pylori J99 # 1 224 1 224 232 345 73.0 5e-95 MFHWLEKNPFFFTVVFLLVFSIAGLVEILPDFAKASRPTENLKPYTLLETAGRQIYIAES CNACHSQLIRPFKAETDRYGAYSLSGEYAYDRPFLWGSKRTGPDLHRVGDYRTTDWHEEH MLNPASVVPGSIMPAYAHLYEKNVDVDTAYAEAYTQKVVFAVPYDTEGNPKLGDLEAARA EILAEAKVLAEDMKDPEIKAALERGEIKQIVALIAYLNSLGQKRRAN >gi|197282986|gb|ABQU01000064.1| GENE 45 46127 - 46345 253 72 aa, chain + ## HITS:1 COG:HP0146 KEGG:ns NR:ns ## COG: HP0146 COG4736 # Protein_GI_number: 15644775 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cbb3-type cytochrome oxidase, subunit 3 # Organism: Helicobacter pylori 26695 # 1 66 2 64 73 59 48.0 2e-09 MDYETIRIIQGYAYWAITILLVILLYGYIYHLYKSQKSGKIDYEKYARLALDDNLNDDLV EARSNKDKKKES >gi|197282986|gb|ABQU01000064.1| GENE 46 46346 - 47227 1136 293 aa, chain + ## HITS:1 COG:HP0147 KEGG:ns NR:ns ## COG: HP0147 COG2010 # Protein_GI_number: 15644776 # Func_class: C Energy production and conversion # Function: Cytochrome c, mono- and diheme variants # Organism: Helicobacter pylori 26695 # 6 284 4 280 286 309 52.0 4e-84 MEWFNLGDSINQLGLLGAVAILVLTIFVAGGYIKKMKNSKAEGDLSSEDWDGIKEFKNDI PIGWGVTYLVLIIWGLWYWFVGYPLNSYSQIGEYNEEVKAYNAKFEAKWQNIDEATLVKM GQNLFLVQCSQCHGITTEGMNGTAANLAEWGREEGIITVIDQGSKGLGYILGDMLPIEEV APGVLSTEEDKKAVAAYVMAEISEVKKTKYPDLVEKGKKLYEAATCNACHGEDGKGMGGM APDLSKYGTPSFVAEVLEKGKKGHIGIMPSFKNQMFTDIQKEALGHFIYSDKN >gi|197282986|gb|ABQU01000064.1| GENE 47 47240 - 47443 315 67 aa, chain + ## HITS:1 COG:no KEGG:HH1260 NR:ns ## KEGG: HH1260 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 61 1 61 66 68 59.0 7e-11 MNGLFGINGLGGYIIAVVLLLAVVFGLGYTAVITQKAEANNPYVIENANSIQMKSVENAQ HFQNAKE >gi|197282986|gb|ABQU01000064.1| GENE 48 47446 - 47556 188 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTKYSGLEKILFAAHIVAIIASIAVVFIPDMLLFVG >gi|197282986|gb|ABQU01000064.1| GENE 49 47558 - 48139 482 193 aa, chain + ## HITS:1 COG:no KEGG:WS0184 NR:ns ## KEGG: WS0184 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 19 193 31 205 205 176 50.0 6e-43 MLSKLKIGIFSLFFLNCIFAQPYVLENQHQLVEKTTGFIEILSDEVYEKTGVRMYVVALE GLNGVNLQEKEQAYLEKLKAPYVLLFFVKAEKKIDILVSQDIEKVFDKKEVYWDYIVPLI PTSDKELNSQRISAFLLNGLVDIADRIAEYYQVQLEHSFPKQNKGIQIAVRTALYVMLFV LLILFVFVYLRRK >gi|197282986|gb|ABQU01000064.1| GENE 50 48139 - 48624 509 161 aa, chain + ## HITS:1 COG:no KEGG:WS0185 NR:ns ## KEGG: WS0185 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 3 149 5 151 163 109 41.0 4e-23 MNKNYWPIGIFLLAMVVVGLIVLTIKTALTNPVEMKGMCGMDSQYVDENINAITQKRQTF LKQYAINFEGAKEQSINEFKMAFLRVKNLENQKIQNNAKITFFLTRPNTTQEDQKLGAGE LVDGIYQSPAFEVKKQGRWQVEAYVEVGEDSICLMQEYLVK >gi|197282986|gb|ABQU01000064.1| GENE 51 48690 - 49217 461 175 aa, chain + ## HITS:1 COG:no KEGG:Bmur_0241 NR:ns ## KEGG: Bmur_0241 # Name: not_defined # Def: protein of unknown function DUF308 membrane # Organism: B.murdochii # Pathway: not_defined # 7 174 7 174 176 65 28.0 9e-10 MKFFSYVVWLLFSVVMIASGVFGCLMPLETFVGFAVLLPIFLLIGGLSNVIYYFYAREAR GAEFILVDGLLNLLFAWIFFWNGIDFTSLAIVAFVAFMILFKGILGIGYAFKLKKLGFGW GMTFFIALLNILIAVIFIANPAVGGVTIGFMIALMVLFFGIISLWLGFGSKKLFG >gi|197282986|gb|ABQU01000064.1| GENE 52 49256 - 50258 1102 334 aa, chain + ## HITS:1 COG:jhp1400 KEGG:ns NR:ns ## COG: jhp1400 COG1748 # Protein_GI_number: 15612465 # Func_class: E Amino acid transport and metabolism # Function: Saccharopine dehydrogenase and related proteins # Organism: Helicobacter pylori J99 # 1 199 1 199 399 307 69.0 1e-83 MACVLQIGAGGVGGVVAHKMAMNKEVFSRIVLASRNIAKCAAIADSIRAKGLGEIEIDRV DADNVDEIVALVEKYKPFLVVNVALPYQDLSIMQACLQTKTHYLDTANYEHPDSAHFEYK EQWVYDTSYKQAGIFALLGSGFDPGVTNVFCAYAQKHYFDEIRTIDILDCNAGDHGYAFA TNFNPEINLREVSSKARYWVKNSFENSSFGMQCDKIENFARGTDTKSANLPQNSQNLHSH AASVALATDPHLQNTRIYSDTNIKSKILECQNSGVDSEAHSTKIAETFNRHCEEASANKA IQNTESSNTKAHISIIPFESSMLDSLLRVWEDSV Prediction of potential genes in microbial genomes Time: Tue May 24 02:43:27 2011 Seq name: gi|197282985|gb|ABQU01000065.1| Helicobacter pullorum MIT 98-5489 cont2.65, whole genome shotgun sequence Length of sequence - 25458 bp Number of predicted genes - 28, with homology - 27 Number of transcription units - 9, operones - 6 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 1558 1435 ## COG1748 Saccharopine dehydrogenase and related proteins 2 1 Op 2 . + CDS 1621 - 1860 182 ## gi|242309532|ref|ZP_04808687.1| predicted protein 3 1 Op 3 . + CDS 1870 - 3300 1289 ## MAE_17480 hypothetical protein 4 1 Op 4 . + CDS 3297 - 3869 176 ## gi|242309534|ref|ZP_04808689.1| predicted protein + Prom 3887 - 3946 6.2 5 2 Op 1 . + CDS 3982 - 5547 994 ## COG1002 Type II restriction enzyme, methylase subunits 6 2 Op 2 . + CDS 5598 - 6557 802 ## COG1106 Predicted ATPases 7 2 Op 3 . + CDS 6560 - 7096 207 ## BHWA1_01866 hypothetical protein + Term 7279 - 7337 -0.4 + Prom 7341 - 7400 11.4 8 3 Op 1 . + CDS 7650 - 8450 554 ## HH1446 cytolethal distending toxin CdtA 9 3 Op 2 . + CDS 8460 - 9284 870 ## HH1447 cytolethal distending toxin CdtB 10 3 Op 3 . + CDS 9305 - 9907 514 ## HH1448 cytolethal distending toxin CdtC 11 3 Op 4 31/0.000 + CDS 9936 - 10670 859 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 12 3 Op 5 34/0.000 + CDS 10699 - 11412 881 ## COG0765 ABC-type amino acid transport system, permease component 13 3 Op 6 . + CDS 11405 - 12133 615 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 14 4 Op 1 . - CDS 12184 - 12639 432 ## COG0790 FOG: TPR repeat, SEL1 subfamily 15 4 Op 2 . - CDS 12636 - 13460 653 ## gi|242309546|ref|ZP_04808701.1| predicted protein - Prom 13617 - 13676 4.8 16 5 Op 1 . - CDS 13684 - 15630 1544 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 17 5 Op 2 . - CDS 15627 - 16109 468 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis 18 5 Op 3 . - CDS 16168 - 17163 456 ## PROTEIN SUPPORTED gi|46129221|ref|ZP_00155777.2| COG1194: A/G-specific DNA glycosylase 19 5 Op 4 . - CDS 17169 - 18164 928 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - Prom 18205 - 18264 7.0 + Prom 18189 - 18248 9.5 20 6 Tu 1 . + CDS 18314 - 18481 201 ## gi|242309551|ref|ZP_04808706.1| predicted protein + Term 18711 - 18757 0.1 - Term 18703 - 18739 4.2 21 7 Tu 1 . - CDS 18754 - 19848 1536 ## COG1064 Zn-dependent alcohol dehydrogenases - Prom 19874 - 19933 11.8 + Prom 19919 - 19978 7.5 22 8 Tu 1 . + CDS 20078 - 20194 94 ## + Term 20245 - 20289 1.2 23 9 Op 1 20/0.000 - CDS 20256 - 21110 965 ## COG1886 Flagellar motor switch/type III secretory pathway protein 24 9 Op 2 3/0.000 - CDS 21119 - 22177 1426 ## COG1868 Flagellar motor switch protein 25 9 Op 3 . - CDS 22170 - 22877 970 ## COG1191 DNA-directed RNA polymerase specialized sigma subunit 26 9 Op 4 . - CDS 22861 - 23250 564 ## WS1640 hypothetical protein 27 9 Op 5 12/0.000 - CDS 23263 - 24120 696 ## COG0455 ATPases involved in chromosome partitioning 28 9 Op 6 . - CDS 24123 - 25457 1409 ## COG1419 Flagellar GTP-binding protein Predicted protein(s) >gi|197282985|gb|ABQU01000065.1| GENE 1 2 - 1558 1435 518 aa, chain + ## HITS:1 COG:Cj0172c KEGG:ns NR:ns ## COG: Cj0172c COG1748 # Protein_GI_number: 15791559 # Func_class: E Amino acid transport and metabolism # Function: Saccharopine dehydrogenase and related proteins # Organism: Campylobacter jejuni # 163 342 182 363 401 262 65.0 1e-69 HFFLKDSDITQIQEEVKAAFKSLQNILVAKVGDEFAGFIGVSEKSIEMLFVSPKFSHIGF GRALMCEAIDAFFVRQNEIFVDCNEENKKGLSFYQKLGFMQRSRSKTDSKGRNFPIIHFS ITKAKLLANLTNDVNTDIESNLALNPDLKKDEIYRKFEREEKHFALESNTQDLKNESYFG GQWRDVAPLALMKEWEYPEVGVKNSYLLYHEELESLIRNIKGLKRIRFFMTFGESYLTHM KCLENVGLLRVDEVEHNGQKIVPIQVLKTLLPDPASLAPRTKGQTHIGCYIKGVKDGKER TIYIYNICDHEACYKEVNAQGVSYTTGVPAMIGAKLICEGKWGVGASKNSSSGNHLQDFV NFEAVITDEVTPAPKSAKNSQSTTSNTRIYGGNGTESKILECQKDGEKNVSCIADSRTQQ SLTQNIRIAESDNCHSERSEESKHIESNYAQERLALNADMPKGGEYQGIDSNNGSGVWNM EQNDPDPFMRELNKQGLPYVVLEIDSNGDSKVLEDGRK >gi|197282985|gb|ABQU01000065.1| GENE 2 1621 - 1860 182 79 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309532|ref|ZP_04808687.1| ## NR: gi|242309532|ref|ZP_04808687.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 79 1 79 79 143 100.0 3e-33 MATITEYEKKFIKGMFEHYKDQYSGQEILGIVNDLRGNPSNHINIGRISEVKKDCGIPVM SKEEVDKWLKKHKRISKGK >gi|197282985|gb|ABQU01000065.1| GENE 3 1870 - 3300 1289 476 aa, chain + ## HITS:1 COG:no KEGG:MAE_17480 NR:ns ## KEGG: MAE_17480 # Name: not_defined # Def: hypothetical protein # Organism: M.aeruginosa # Pathway: not_defined # 1 459 1 457 462 222 34.0 2e-56 MKVTLKNIGMLDEAEFEVGDLTIICGENNTGKTYATYSLYGYLDFMRTIMDNMFFRVKRR LFRKDSLHRDSDAQQEKSLSYNEIYEKLQSHIKEKTSLYSRRIVAQVMAGKDEDFMESEF TAVLNISLDELKTTIKNLENLEYRESVIGRFGMHHVIYDDGLRIMGLRNEQDIDNYLEVF LDRLLNVILAKTFILSVERTGASIFQEELDFNKIAKLEVAQKMLKNEKIEFFDIQDTLRE KIQLYPKPVRDNISLIRDIKEISKQNSMFKQDKDQYEAIFNLLAKVAGGKYKANELGILF QPKGSKKAYNIEIASSSVRSLLMLYYYILHQAQKNDILMIDEPELNLHPNNQILVARLLV LLVNAGIKVFITTHSDYIVRELSNCIMLNNLNDTQIEKFKKQGYTKECKLESSKLKAYLA KKIKGKNTLKEVKVDSKQGIFMETFDEPIDSQNDNQSLIFEELCRTVKNHNNVEQE >gi|197282985|gb|ABQU01000065.1| GENE 4 3297 - 3869 176 190 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309534|ref|ZP_04808689.1| ## NR: gi|242309534|ref|ZP_04808689.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 190 1 190 190 338 100.0 1e-91 MTNKNLKDLRDAIHKDLKINPTGSCFSIKEDSKESAIKKIEFTFKNQDDVLVIRQRDNNH AINLLTKYSTNQSCDCIIFRIKQGTLKLYFCEIKSSYNEKYIKEACEQMQASKLFVAYLL ACYRHYHNKKIDIRESQYYYIYPKIGNSNKKKPYIDNANQTHLQFKPLMIDERGIARISK KEMEKFFKDS >gi|197282985|gb|ABQU01000065.1| GENE 5 3982 - 5547 994 521 aa, chain + ## HITS:1 COG:Cj0690c KEGG:ns NR:ns ## COG: Cj0690c COG1002 # Protein_GI_number: 15792039 # Func_class: V Defense mechanisms # Function: Type II restriction enzyme, methylase subunits # Organism: Campylobacter jejuni # 7 232 10 212 1250 246 57.0 6e-65 MPHAFHFLRNNLFTSYTLEVDFPQIYDFEKNTELAKNALDSIKAIYNKEKFISQNEHQFE DDFISEVLEILGWSFIRQEEKIIQGKLEKPDFLLFTNQDSKNTYLQIPKEQRTANNEYFS VIAESKAYKVEIDNKKIKDNPHFQILRYLSNLKKDYGILTNGRIWRFYDNSKLSATKIFY EIDLEAILAMDNPHDESTLESSRQAESKSHILSQLQAFNYFYHIFHAKNFTQDFKEYKEL LETMLETCHSKPFPLRHSEGCKPEESKSIESTIAIKDSLFATQIQNDGDISPNAHHDEIV SHSEPLGEKSKITKEQLEDSFIRYDREFFRLGFRAVASDTNERTLIFSLLPKNVGCGNSI WASIPKRYIIDSHGNIAIQSVNHKRLLFALGICNSLVVDYIARGMIQINVNKTYLERIPL PQPSDEELETKQDYIYKNALILQLYHDKAGDFEDLQKEFGIDKGQIPSTQKAYDTLRAKL DIHIAKLYGLSKEEFCAILESFKVLHDKQPRYITLLKSLWE >gi|197282985|gb|ABQU01000065.1| GENE 6 5598 - 6557 802 319 aa, chain + ## HITS:1 COG:jhp0346 KEGG:ns NR:ns ## COG: jhp0346 COG1106 # Protein_GI_number: 15611414 # Func_class: R General function prediction only # Function: Predicted ATPases # Organism: Helicobacter pylori J99 # 1 281 1 330 381 108 27.0 2e-23 MLEFIQIQNFRSIEKLTIEGFRKLNVFIGQANTGKTSVLEAIYICLRENPDSLSALLKIR DMERREVGQFDGLFYNYDINRTIKLLSPKANVEIQYKDGADNPKEIREMDSYLEMNIGGK IVKLYGDHIWNVVRNRFFPKNSVDFISFIPSFREKTLENNLKIIVENREKRDKLPKICSD FSDNIVTIRFSGNKIMVEQKNLSRDISLKLMGNGFQSYIAIFASILAGAKYVVIDEIENG LHYEAMEILLRAMFEYEGVQFFFTTHNEELLQKLYKNIGNKKDNIAVFKLYNKNNALQVL RYSQDNFIVNMGEENELRD >gi|197282985|gb|ABQU01000065.1| GENE 7 6560 - 7096 207 178 aa, chain + ## HITS:1 COG:no KEGG:BHWA1_01866 NR:ns ## KEGG: BHWA1_01866 # Name: not_defined # Def: hypothetical protein # Organism: B.hyodysenteriae # Pathway: not_defined # 6 176 4 177 182 99 41.0 5e-20 MSELLIVVEGQTDRNFIEVYCEFLCIKAEVKSCGGKHNLSSIKDIKRYDRVKIIFDADED REKAKENILNQLNESFSEDQSKCEIFLLPNNNESGDLETLLKNIATKPHIFECFKQYTKC IESLRKDDSNIELPKKKSIIFAYLECFGLGKISKDSLDDKIFDMNGDYLKPLKDFLSQ >gi|197282985|gb|ABQU01000065.1| GENE 8 7650 - 8450 554 266 aa, chain + ## HITS:1 COG:no KEGG:HH1446 NR:ns ## KEGG: HH1446 # Name: cdtA # Def: cytolethal distending toxin CdtA # Organism: H.hepaticus # Pathway: not_defined # 94 265 67 230 231 161 46.0 3e-38 MKTFIMLGMVFVICFCGCGSKKPSQDIIPATANGVDFGIGDTPMIPAESGISANETIENP KLFAGPNIKEEAIKEFLKQTTTSLDNHSRNSQKPSNANNANSSRLRNLDTSDVITLLSGG GIALTVWATNPGNWLWGYPPFNSIEFGKARQWRILTRSNGKISFQNVQTGTCMSAYKNGV IHLPCRENNPSQLWNINPFSNRAIQLQNEATKTCLQTPVIRTKNFGSIFLAKCVTQQNPS SGNDNISQQWVITAPLTSTPPIFVID >gi|197282985|gb|ABQU01000065.1| GENE 9 8460 - 9284 870 274 aa, chain + ## HITS:1 COG:no KEGG:HH1447 NR:ns ## KEGG: HH1447 # Name: cdtB # Def: cytolethal distending toxin CdtB # Organism: H.hepaticus # Pathway: not_defined # 3 274 2 273 273 397 70.0 1e-109 MQKILISLLLVLTAVYAKIEDFRVGTWNLQGSSASTENKWQVSVRQLVTGDNPINILMLQ EAGSVPNSARRTGRMVQPGGTPVEEYIWELGTISRPRSVFIYHADIDVGARRVNLAIVSD RMADEVIVVHQNTIATEASRPALGIRIGTDVFFSLHALASGGGDATALVTAIHDHFMNMP QITWLIAGDFNREPASLLSGLDSRVTSNIRIVSPNTATHFSSRGTNRILDYAIVGNTQAP GVQVSLPALSAILAAASVRSYLSSDHFPVRFGRF >gi|197282985|gb|ABQU01000065.1| GENE 10 9305 - 9907 514 200 aa, chain + ## HITS:1 COG:no KEGG:HH1448 NR:ns ## KEGG: HH1448 # Name: cdtC # Def: cytolethal distending toxin CdtC # Organism: H.hepaticus # Pathway: not_defined # 19 200 1 183 183 160 47.0 2e-38 MKNAFLVYCRSLQTLHKQMWKSFLAFVLLCGSMPLFAENPEDLPDFTPSFMIRSAYDGSV LTIDEKQLNWNLREITDDSGIKERDPWPFFKLSYVQFVSPNNADVCLAIDESGKFVGKSC KKDIESKKLETVFSIIPTTTSAVQIRSMVLNADECITFFNTPRKSGFGINSCDVDRLFNV DLRNLMLILPPFQAAVPINP >gi|197282985|gb|ABQU01000065.1| GENE 11 9936 - 10670 859 244 aa, chain + ## HITS:1 COG:FN0800 KEGG:ns NR:ns ## COG: FN0800 COG0834 # Protein_GI_number: 19704135 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Fusobacterium nucleatum # 26 244 12 230 230 211 50.0 8e-55 MIKNMMKFLLAILVVALVFGCQKNEKGSKVYVGTNAEFAPFEYREGKNIVGFDIDLIKEI ARISGFEIEFVDMQFDGLLPALESGKIDLIISGMTATEDRKKFVDFSSPYYSTKQAILVY QDEQKIQSFDDLVGRKVGVVLGFTGDILVSKIPNIQSQKFNAASEVILALKSKKIEAVVM DYETAKNYAKQNSELKLVQTDFASEEYAIAMRKGNEELLGKINQAIKQIKENGFYDGLIA KYFQ >gi|197282985|gb|ABQU01000065.1| GENE 12 10699 - 11412 881 237 aa, chain + ## HITS:1 COG:FN0802 KEGG:ns NR:ns ## COG: FN0802 COG0765 # Protein_GI_number: 19704137 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Fusobacterium nucleatum # 2 237 1 236 236 279 68.0 4e-75 MLEYLELLKEIFIVDSRYKYILEGLIFSISTTALAAIIGIVLGVVVALMQLTNFYPFRNI QALANFNPLSKIAYAYVYIIRGTPAVVQLMIWANIIFIGALRDMPILLIAAIAFGINSSA YVAEIIRAGIQSLDKGQMEAARALGMGYAMSMKEIIIPQAIKRILPPLVSEFIALLKETS IVGFIGGVDLLRSASIITSQTYRAIEPLLAVGIIYLILTSLFAMLMRKVEKRLQESD >gi|197282985|gb|ABQU01000065.1| GENE 13 11405 - 12133 615 242 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 241 47 3e-63 MIRVENLHKNFGELEVLKGINIEVSKGEVIAIIGPSGSGKSTFLRCINRLEEPSSGAIYI DNQNIMDKKTDINKVRQKLGMVFQHFNLFPHKNVLENITLAPTKLKKLPKETAEKKAMEL LGRVGLIDKKDFYPSKLSGGQKQRIAIARALAMEPEIMLFDEPTSALDPEMIKEVLDVMV DLAKEGMTMMIVTHEMGFARNVASRILFMSEGEIIEDSTPNMLFDNPKNKRVQEFLYKVL QK >gi|197282985|gb|ABQU01000065.1| GENE 14 12184 - 12639 432 151 aa, chain - ## HITS:1 COG:jhp0197 KEGG:ns NR:ns ## COG: jhp0197 COG0790 # Protein_GI_number: 15611267 # Func_class: R General function prediction only # Function: FOG: TPR repeat, SEL1 subfamily # Organism: Helicobacter pylori J99 # 14 137 45 172 250 99 42.0 2e-21 MRKIVFLMALLSSLAFANSELERQCNNGDAGSCGALGDLYRYGYGVKQDYNKAMEFYGKA CEMGEAKGCGALGDLYYNGEGVKQDYKKTNDLWSKACEMGEAEGCSALGDLYYVMKDYNK AMEFFGKACDLGEQKGCDAYKEMKTKLNSNY >gi|197282985|gb|ABQU01000065.1| GENE 15 12636 - 13460 653 274 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309546|ref|ZP_04808701.1| ## NR: gi|242309546|ref|ZP_04808701.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 274 1 274 274 497 100.0 1e-139 MEKKIEKEKWLGMQFSKFRELDNCENPAKTLTKRLKNYQKQTKSPYYRFWEILKKCELHM TNFEQFNDIDEGRYSFTEDSDIDAQNTTNDKNKRNICSFSYFEDLEDLNDRQCSETLMWA HYGGSHYGIRIDFKIHTSYKGNIYKIGYIESYEQDRQTYKSQKELLGNIERILTTKKPCF RYECEYRAISQNNNKLPIIIKKITLGRRFTKENVYSQENEEKSFSDDIKNLGKEILKVWK TGVKRGDREPEIWAYKTKYSPEPQPVLNNAKEIK >gi|197282985|gb|ABQU01000065.1| GENE 16 13684 - 15630 1544 648 aa, chain - ## HITS:1 COG:Cj0586 KEGG:ns NR:ns ## COG: Cj0586 COG0272 # Protein_GI_number: 15791946 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Campylobacter jejuni # 1 648 1 647 647 691 53.0 0 MNYTQYLQAIKTLNLWAKHYYILDDPIASDEEYDTLYHQIKEFEAKNPNQIAKDSPTQRV GDNILESFSKSEHIERMWSLEDIFDTQELQEWINRVSKGENLLFTIDPKFDGASLNLLYE NGKLQKATTRGDGFIGENVTQNAKTIQSIPLSIPYTDRIEIRGECVIAKNDFERLNQERL ENGESLFANPRNAAAGSLRQLDSKITAKRKLQFIPWGVGFCTIEENSFFELMQKIRSFGF LTSPFSKLCKNLQEIEESYQNLISKRDSYPIMLDGMVIRIDSIALQKNLGFTIKAPRFAC AYKFPAIEKKAKILDITLQVGRTGVVTPVAILEPVMIEGAKVARATLHNFDEIRKKDILI NDSVILIRSGDVIPKIIKSLPSLRDGTQKKCEIPTHCPICGSELLIEEKLIKCQNLSCKA RLKNSLIHFISKKALNIDGLGKRIIDLLFERGKITKIEDIFSLQYEDLEGLEGFKDKKIH NILNAIKESKGIDLWRFINALGIEHIGEGASKKLANTFGLEFCQKGFEDFITLDGFGEEM ANSLVEFCHINQERIKNLLNILTPKTTQTPQSTTNLSGKTFVITGTLSQKRESYQEILES LGAKVSSSVSKKTDFLLCGEEAGSKLTKAQELGVKILDEKDFWELIKE >gi|197282985|gb|ABQU01000065.1| GENE 17 15627 - 16109 468 160 aa, chain - ## HITS:1 COG:NMA0463 KEGG:ns NR:ns ## COG: NMA0463 COG1854 # Protein_GI_number: 15793465 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Neisseria meningitidis Z2491 # 1 159 1 162 168 235 69.0 2e-62 MPLLDSFKVDHKKMPAPAVRLGKVMHTPKGDEICVFDLRFCKPNVEILSQEGIHTLEHLF AGFMRDHLNSDKVEIIDISPMGCRTGFYMSLIGKPSCEEVKNAWEASMKDILEVSEIPEA NELQCGTYKMHSLQAAKEIAQDTLSKGIGIMDNEALKLDL >gi|197282985|gb|ABQU01000065.1| GENE 18 16168 - 17163 456 331 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|46129221|ref|ZP_00155777.2| COG1194: A/G-specific DNA glycosylase [Haemophilus influenzae R2846] # 14 286 15 305 378 180 36 9e-45 MNTPPNPSSLHTEILLWYSKEGRKSLPWRDKSQKNRAYRVWISEIMLQQTQVKTVLENYY FPFLEKFPTLESLANAKEEEVLLQWRGLGYYTRARNLLKTAKICKESFNGELPKNLDLLQ KLPGIGRYTAGAIACFGFDCAVSFVDSNIKRILTRFFALQNPTQNLLESKAKEILNCYDP FNHNQALLDIGATICTPKNPLCPKCPLQNFCQGKANPFLYTQTQKTTTIKKDLLLGIYIQ NSKIALTKSTNKLYYNLYNFPNLTSKTPKLLGTLKHTYTKYNLTLHLYKLNSCSQIAANQ KLEFFSPSELKSLPISNMTLKILQFLKIFSN >gi|197282985|gb|ABQU01000065.1| GENE 19 17169 - 18164 928 331 aa, chain - ## HITS:1 COG:alr2526 KEGG:ns NR:ns ## COG: alr2526 COG2141 # Protein_GI_number: 17230018 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Nostoc sp. PCC 7120 # 1 327 1 329 333 166 30.0 9e-41 MKSGIFTLIENWDNNEANTILDSLALIQHCDALGLDEVWIGEHHFNNFTLCSAIIPLISA ALAQTQNIKIGSAAILLPHYHPIRISEEIATLDLISKGRFLFGFARGAFPIFDIAMGNNA KNNRDIMLENAQIIHNLLFKEQVNFSGDFFEINNISIRPHPKGLIPFYIASTHKPTLQKA ANLGYNFLGSLTLDSTEAKEIHQIFQTNAKKYDFTLMRAFYVDKDRKVAEEKAQIGVDIF TQCMLRANENNPTFESIIKTSDYEEFRADFFNKDKILKTMIVGTPQDCIEQIRDLQKEYG ITSLALKLLSSNLEDSKNILNIYKEQILPNL >gi|197282985|gb|ABQU01000065.1| GENE 20 18314 - 18481 201 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309551|ref|ZP_04808706.1| ## NR: gi|242309551|ref|ZP_04808706.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 55 12 66 66 102 100.0 9e-21 MFHIVFNADEKYIPYAAVLMTSIIKNTNPNKTFADFCVDSNQNETINSSGGGGSI >gi|197282985|gb|ABQU01000065.1| GENE 21 18754 - 19848 1536 364 aa, chain - ## HITS:1 COG:Cj1548c KEGG:ns NR:ns ## COG: Cj1548c COG1064 # Protein_GI_number: 15792856 # Func_class: R General function prediction only # Function: Zn-dependent alcohol dehydrogenases # Organism: Campylobacter jejuni # 12 359 7 355 358 521 72.0 1e-148 MLLDSNLNEAREGKRISAKGYAVQHKSDTFKPFEFSRHALGENDILIEILFAGICHSDIH SARSEWKEGIYPMVPGHEIAGKVVAVGSKVSKFKVGDYAGVGCMVNSCGECEACKASNEQ YCERGMVATYDCHDYFHNNEPTYGGYSNNIVVSENFAVNVPQDAPLEKVAPLLCAGITTY APLKFSQVKSGDKVAVAGFGGLGMMAVKYAVQMGAEVYVFARNKNKEQDALKMGAKKLYD TTDSSVVAERFDLIISTIPTPYDITAYLKLLKLGGEMGIVGLPPTEVAPTIDAAGLIFNA HKKVYGSLIGGIKETQEMLDFSLKHKIYPETEIIAANQINEAYENLTNGKAKFRYVIDMK TLEN >gi|197282985|gb|ABQU01000065.1| GENE 22 20078 - 20194 94 38 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLEKTMIKTLAKHYKDGDFCIEFWDKEKVCFGDGEPKF >gi|197282985|gb|ABQU01000065.1| GENE 23 20256 - 21110 965 284 aa, chain - ## HITS:1 COG:HP1030_2 KEGG:ns NR:ns ## COG: HP1030_2 COG1886 # Protein_GI_number: 15645644 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar motor switch/type III secretory pathway protein # Organism: Helicobacter pylori 26695 # 186 283 5 102 104 128 72.0 1e-29 MLNDFLKLITQESIATIEGLLGQTPDISHLEEKNGDKESIKAPIARIDIATDNDANLALF ISPKVATALADMMLGGEGTAKDTMDNDDLDATKEITSNIFGAISTSLGAQKELPKLSFTL KNIQFITEDSELGLENFSGFYTFAFNLGSIQDFLYFAFSSSFEKSFNPNTTEDSDNVALD ANTQTEAEEEKFELNNAGLKNIAMLLDVRLQVKVRIGQKKMLLKDVIAMDIGSVVELNQL ANDSLEVLVDDKVIAKGEVVIVDGNFGIQITEIAPKKDRIEQLM >gi|197282985|gb|ABQU01000065.1| GENE 24 21119 - 22177 1426 352 aa, chain - ## HITS:1 COG:HP1031 KEGG:ns NR:ns ## COG: HP1031 COG1868 # Protein_GI_number: 15645645 # Func_class: N Cell motility # Function: Flagellar motor switch protein # Organism: Helicobacter pylori 26695 # 1 349 1 348 354 461 71.0 1e-129 MADILSQEEIDALLEVVDDEGTEPETLERPTAIQQRQVTLYDFKRPNRVSKEQLRAFRGI HDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPLDGTGVLE INPSIAFPMIDRLLGGKGDPYESTREFSDIELNLLDTILRQMMQNLKEAWAPITEIFPNV DVKESSPNVVQIVAQNEIVIMVVMEIIIGHSSGMMNLCYPVISLESVLSRLASRDIMLSE TSSKKSRNKELQALLGGAKVNVTAMLGETKLTLREILELESGDIVRLDRPADDTVIINVD GREKFLASIGLHRYRKTIEVKEMIKTEKDQVKEILEMLESQRKSRANEIEDE >gi|197282985|gb|ABQU01000065.1| GENE 25 22170 - 22877 970 235 aa, chain - ## HITS:1 COG:HP1032 KEGG:ns NR:ns ## COG: HP1032 COG1191 # Protein_GI_number: 15645646 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit # Organism: Helicobacter pylori 26695 # 3 228 25 250 255 244 59.0 9e-65 MLKTSKGYQNIIKQNQDNLALDYLPALKALAARLKERLPANVEFADLVSIGTEELIKLAR KYDSTLNDSFWGYAKSRVHGAMLDYLRGLDCMSRYSRTLTKNIDREISKYYNEHQEEPDN AYLSQVLNEDIEKIKDARNASEIYGILPLDEELSASQDDKTYNKVEKEELIEIIQKILET SPQNEQLVIQLYYYEELNFKEIGEILEITESRVSQIHKAVIRKIKKYLEERGVDG >gi|197282985|gb|ABQU01000065.1| GENE 26 22861 - 23250 564 129 aa, chain - ## HITS:1 COG:no KEGG:WS1640 NR:ns ## KEGG: WS1640 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 3 118 1 116 117 115 50.0 4e-25 MSLKMDNFLSFAIVNGFFIGLLLSFLKFDEPEMIVAWTLVSTIGFYLITLVSVSFFVKFV DEQERATKKPSYNATLEEYIQEFDKREKIANKIRGFLRTMEKTMREEEEEKYAASKTKHN KERENVEDF >gi|197282985|gb|ABQU01000065.1| GENE 27 23263 - 24120 696 285 aa, chain - ## HITS:1 COG:jhp0390 KEGG:ns NR:ns ## COG: jhp0390 COG0455 # Protein_GI_number: 15611458 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Helicobacter pylori J99 # 1 285 1 293 294 251 46.0 2e-66 MKNQAANLEFLLDSPKKINTKFVTITSGKGGVGKSTFSANLAYKLWQLGFKVGIFDADIG LANLDILFGVRCEKNLLHVLKNQATLKDIIIPIERNLYLIPGDSGTDIFRYKSEFMFETL IEDSSFLDGLDFVLIDTGAGIGEYTQTFLKNSDDSIVLTIPDPAAITDAYATIKLTSTFK DKIFMVINMAKNQEEAEMIFKKIQKIAQSNIGNISLDYLGKLTKNPLINHYSKNRGIFVK EEPNCSASMEIEKIARTLAAKMEQNVLVQEDKRFGKFLKRILGHF >gi|197282985|gb|ABQU01000065.1| GENE 28 24123 - 25457 1409 444 aa, chain - ## HITS:1 COG:jhp0389 KEGG:ns NR:ns ## COG: jhp0389 COG1419 # Protein_GI_number: 15611457 # Func_class: N Cell motility # Function: Flagellar GTP-binding protein # Organism: Helicobacter pylori J99 # 75 441 74 447 455 369 53.0 1e-102 EFSIISQKKLADGNYEISVAISEEDLKQVKEKQELAQKENLPLVKSNNIAERLELIAQKE LERKRAAQSLQSLPEEVSLQLSDAVRQISQIAGVNTKIPPKSPYNPKEKSSRDEKIEKSQ ASSNALENTKAKKQENPQDSVNLQIIRGEIDKLNDKIKLIQNMFWEERGPKKEGLIIPHE FAEIYRIAKASGMAKEHLEKIMQLTLELMPIKMRENSILIKRYFREVLRKMVYARAENLS GNVKNIMMLVGPTGVGKTTTLAKLAARYSRMLNKNYKVGIITLDTYRIGAVDQLMFYAKK MKLSIDTVVDTEEFINALDSLKYCDYILIDTVGSSQHDRAKLESLKNFVNADPNTKIDVS LVMSATTKYEDLKDIYHTFSTLGIDTLIFTKLDETHSYGNIFSLIYETKKATSYFSIGQE VPNDLMVATSDFLIDCLLDGLKRA Prediction of potential genes in microbial genomes Time: Tue May 24 02:44:24 2011 Seq name: gi|197282984|gb|ABQU01000066.1| Helicobacter pullorum MIT 98-5489 cont2.66, whole genome shotgun sequence Length of sequence - 10553 bp Number of predicted genes - 13, with homology - 12 Number of transcription units - 7, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 134 88 ## 2 1 Op 2 2/0.250 - CDS 68 - 673 329 ## COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 3 1 Op 3 4/0.250 - CDS 648 - 1691 1010 ## COG0006 Xaa-Pro aminopeptidase 4 1 Op 4 . - CDS 1704 - 2189 730 ## COG0757 3-dehydroquinate dehydratase II - Prom 2220 - 2279 9.5 + Prom 2310 - 2369 10.2 5 2 Tu 1 . + CDS 2401 - 2952 731 ## COG2032 Cu/Zn superoxide dismutase + Term 2970 - 3024 1.1 + Prom 2996 - 3055 8.8 6 3 Op 1 . + CDS 3081 - 3536 521 ## WS1965 hypothetical protein 7 3 Op 2 . + CDS 3517 - 4107 453 ## COG0742 N6-adenine-specific methylase 8 3 Op 3 . + CDS 4131 - 4445 426 ## HH0922 hypothetical protein 9 4 Tu 1 . - CDS 4446 - 5558 1044 ## COG2855 Predicted membrane protein - Prom 5607 - 5666 8.7 + Prom 5583 - 5642 9.6 10 5 Tu 1 . + CDS 5704 - 6600 867 ## COG0583 Transcriptional regulator 11 6 Op 1 28/0.000 - CDS 6586 - 7803 1089 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 12 6 Op 2 . - CDS 7815 - 8873 989 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase - Prom 8901 - 8960 6.4 + Prom 8870 - 8929 8.2 13 7 Tu 1 . + CDS 8958 - 10427 1510 ## COG0696 Phosphoglyceromutase Predicted protein(s) >gi|197282984|gb|ABQU01000066.1| GENE 1 2 - 134 88 44 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYPTQRVGKKRERNYPSKRIQMKLFTYTAETSTLALAEAKKELG >gi|197282984|gb|ABQU01000066.1| GENE 2 68 - 673 329 201 aa, chain - ## HITS:1 COG:HP1036 KEGG:ns NR:ns ## COG: HP1036 COG0801 # Protein_GI_number: 15645650 # Func_class: H Coenzyme transport and metabolism # Function: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase # Organism: Helicobacter pylori 26695 # 63 197 15 151 163 117 48.0 2e-26 MEQGFLENKTKTYFNTKTYHTKEIKKDFWRFIPLYPKPKYHLKLANKLPRFLLIRRENPY RHFKDYSKIQSYVILGIGSNQGESLAIFWKLFLRLQKKNDIISFSPFLKNPAFGYTKQAD FYNGIIWLKTKLGYADFFSHCAYLERNFGRKRKRDFKNAPRTLDIDILGFKNKNITLNHL CIPHKEWAKRESVTIPLKGFK >gi|197282984|gb|ABQU01000066.1| GENE 3 648 - 1691 1010 347 aa, chain - ## HITS:1 COG:jhp0387 KEGG:ns NR:ns ## COG: jhp0387 COG0006 # Protein_GI_number: 15611455 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Helicobacter pylori J99 # 8 345 13 357 357 337 51.0 2e-92 MDNFIIKDENAVYFETNYSCDNVIFLAIGEKGYFITDGRYEVEAKENIKNHKYEIEILIS HNLIRTARTILKKNEKISLIYNPQEFSVYEFEKLSSDLKINFMPKPNFHQEKRIRKTQDE INLIEYSQKLNIKAFDKFAKWIDKKGKNQSEAFLHFKSQSFLSKKGQYDLSFNPIVGING NAAKPHALPSSDILQKGDLLLFDAGIKYKRYCSDRTRTGYFSKDGFNFAKKQTFKDKELQ KIYDIVLKAQENAIKNAKAGMLACEIDALARSVIEKAGYGKYFVHSTGHGIGLDIHELPI ISPRSKTIIEEGMVFSIEPGIYIPQKYGVRIEDLVVIEQNGARILGE >gi|197282984|gb|ABQU01000066.1| GENE 4 1704 - 2189 730 161 aa, chain - ## HITS:1 COG:Cj0066c KEGG:ns NR:ns ## COG: Cj0066c COG0757 # Protein_GI_number: 15791458 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase II # Organism: Campylobacter jejuni # 1 155 1 155 159 198 66.0 4e-51 MKVIVIQGPNLNMLGIREPRIYGTAKLETIHQNIQKHAEQIGLEVDFFQSNFEGEIVDKI QESLGQYQGIIINPAAYSHTSVAIRDAISAVGLPTIEVHISNIHAREEFRQKSLTAGACS GVIAGFGPMGYHLALQGISQILNEIQAIRQAREAQAKQQEQ >gi|197282984|gb|ABQU01000066.1| GENE 5 2401 - 2952 731 183 aa, chain + ## HITS:1 COG:PM1952 KEGG:ns NR:ns ## COG: PM1952 COG2032 # Protein_GI_number: 15603817 # Func_class: P Inorganic ion transport and metabolism # Function: Cu/Zn superoxide dismutase # Organism: Pasteurella multocida # 1 183 1 186 186 157 45.0 9e-39 MKKILLSALAVSFVSVGLMAQDETKIYNPKAEKNHLVIKMEILGEKGNTPAGEIVAVETK YGVAFYPDLKGIESGIHGFHVHVNPDCGATEKGLGMKAGGHWDPQENKAHSYPWADEGHK GDLPALYSSDKNEIKTPVLSPKIKTLEELKNHSLMIHVGGDNYHDHPQVLGGGGARMVCG VIR >gi|197282984|gb|ABQU01000066.1| GENE 6 3081 - 3536 521 151 aa, chain + ## HITS:1 COG:no KEGG:WS1965 NR:ns ## KEGG: WS1965 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 77 1 77 121 75 49.0 4e-13 MKIALISDSLLLDRTLEMYLKDYLTSYKLCDFVVATQPVDSQKPVFLIGEYENANLHKPF TKEILLQALEAFFLQIRGEQEAKEEEEIKYTNVESANWNEMLKDVEIEEEKKPLDLELHQ KILKVLENYAKEITMIVQEHYKEKNNENKSK >gi|197282984|gb|ABQU01000066.1| GENE 7 3517 - 4107 453 196 aa, chain + ## HITS:1 COG:HP0810 KEGG:ns NR:ns ## COG: HP0810 COG0742 # Protein_GI_number: 15645429 # Func_class: L Replication, recombination and repair # Function: N6-adenine-specific methylase # Organism: Helicobacter pylori 26695 # 6 194 3 199 200 135 41.0 6e-32 MKTNQNKKPLLKVIGGAFKGRNIKMAPLEITRSSKAILKESLFNTLNQEVVLANFVEFFA GSGSIGIEALSRGAKSAIFFEQNKETCRILEENLQNICQGCHYRIVFGDTFEKYQEALKG LDYLSIGYFDPPFDIREGMTGIYQKCFKMIEKLDTKVFGIVILEHISSLEIPQFIGSFKK VKTKKFGKSSLSYFVA >gi|197282984|gb|ABQU01000066.1| GENE 8 4131 - 4445 426 104 aa, chain + ## HITS:1 COG:no KEGG:HH0922 NR:ns ## KEGG: HH0922 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 100 1 97 109 63 36.0 2e-09 MQYYGKRYKSLAKAIFKEDLEGILENDEWICVDIRMPDDFRAGHLKGAKNITTQEELQEI LTLNKKILINCYLGHSASLLGSDLVEAGYQNIYFLDEEIAHCLE >gi|197282984|gb|ABQU01000066.1| GENE 9 4446 - 5558 1044 370 aa, chain - ## HITS:1 COG:Cj0999c KEGG:ns NR:ns ## COG: Cj0999c COG2855 # Protein_GI_number: 15792326 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 4 370 6 365 365 382 65.0 1e-106 MINLIHFKNFLQSIFRGVFFVGVIVALAFYLASVEKIHDSTHLAATAFAIIIGTILSPWF FKYQHSLQAGVQFSAKKLLRLGIILYGFNITFNELYNIGFYGFLIAFIVISVVFLVGLFV GVRVFGLDRETSMLVSAGSAICGAAAVLALESTLKSDSFKGVVAVGSVVVFGLIAMFLYP IAFSSGFIPLLNSDGMGLFMGATLHEVANVAGAAEMAKDMTSGAFTQSAANLAIILKMMR VILLVPFLLIVGYYVAKDNSHSNNPHHTSKKIDIPYFAFLFLGIIVLNTFLNTYKETLIF ANFSMQSLIDCGRLLCTLCIVFAMAALGLQIDFKKFIKLGGKAFGLALVLFAILIFGGYF LILCFQGILW >gi|197282984|gb|ABQU01000066.1| GENE 10 5704 - 6600 867 298 aa, chain + ## HITS:1 COG:Cj1000 KEGG:ns NR:ns ## COG: Cj1000 COG0583 # Protein_GI_number: 15792327 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Campylobacter jejuni # 1 289 1 289 293 285 52.0 1e-76 MKIRDLEIFIDLLHTKSPTLTAENFKTTQPNVSVIVKNIEKMFGIKLFERLGKKLLPTTQ ALYLGGMWLEVVQGYYSSLEALGEEGVLLGEINIVATHTIGEYFLPRILFDFAKEYPKVK INFKIYNTKECLSLLKNGDVELAIVEGEIGLEYAKSEGLIREVLCEDTLVVASNDFILAS KPRYIDELLDKKWIFREYGSGLRDSFLNALGNLKKEIPIFLELDRTTAIKDLVINKGAIA VFSEVAIKQELQNGILFPLEIINLNLERHFYSLKRKSQLLNSVLTRFEEFVSEGLRGI >gi|197282984|gb|ABQU01000066.1| GENE 11 6586 - 7803 1089 405 aa, chain - ## HITS:1 COG:Cj0432c KEGG:ns NR:ns ## COG: Cj0432c COG0771 # Protein_GI_number: 15791799 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Campylobacter jejuni # 4 401 5 399 402 399 51.0 1e-111 MLILLGYGQTNKALAEKFAPCCIFDDSFTQISKDSYGNTLLPPNKLQETLQKYPQAQIIT TPGIPPQNLMIKLTNPISEYDFFATKMPFSIWISGTNGKTTTTQMLTHLLKHKGAISGGN IGNPLANMDTNAPLWILETSSFTLHYTKIAKPNLYLLLPITQDHISWHGDYESYINDKLK PILTMQDKEIAILPKSLQSHPFCQKSLAKLFFYEDSQSLAREFFLEIPKIRFQEPFLLDA LLALSATQVLFQQVDYDLLNSFKIGEHKIEEFWDNQNRLWVDDSKGTNLDATLEAIKRYK DKKIHLILGGDDKGADLTPLFEFMRLCQISLYAIGSNTQKLTHLAEKYQINHLPCYTLEV AVNEIKKHHNSQSIAMLSPAAASLDQFSSYKQRGEKFKSFVLNTP >gi|197282984|gb|ABQU01000066.1| GENE 12 7815 - 8873 989 352 aa, chain - ## HITS:1 COG:HP0493 KEGG:ns NR:ns ## COG: HP0493 COG0472 # Protein_GI_number: 15645120 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Helicobacter pylori 26695 # 5 352 6 353 353 400 63.0 1e-111 MIYYLYSFLEINLFQYITFRAAIAFFVAFFLTIFIMPYYIVWARKKNANQPISQFTPQNH KQKVNIPTMGGIIFVFATLVASILCAKLDNAFVIFGLMSLVLFSSIGIYDDYSKVLQRKN AGMSAKMKFTLQAISGFLVSLGLYCYGMDSHFYLPFFKNFIWDWGLFSLLFWTLVFVATS NAVNLTDGLDGLATIPSIYALTSLGIFVYIAGHSVFSTYLLYPKIPDSGEVVVVSAALIG ALIGFLWYNCHPAQVFMGDSGSLALGGVIAYMAIISKNEILLFVIGFIFVIEALSVLLQI GSYKTRGKKLFLMAPLHHHFEEKGLSESKIIVRFWIIALMSNLIALLTIKLR >gi|197282984|gb|ABQU01000066.1| GENE 13 8958 - 10427 1510 489 aa, chain + ## HITS:1 COG:jhp0908 KEGG:ns NR:ns ## COG: jhp0908 COG0696 # Protein_GI_number: 15611975 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglyceromutase # Organism: Helicobacter pylori J99 # 2 489 4 491 491 595 59.0 1e-170 MKTILIITDGIGDSKQEKYNAFKTAKKPNYERLFQEVPYGMIKTYGLSVGLPDGQMGNSE VGHMCMGSGRILYQDLVKINQAIQNGTLLENPALQSLQNCKRIHLVGLMSDGGVHSHLEH ILALALGLEGKGYEILLHLITDGRDVLPQTALKFLEEVQTKIQNKNIKISSISGRFYAMD RDNRWERIEEAYNVIVCAENPQSISPQEYIHQSYQEGIFDEFIKPASFDNSGIKAKDGLI FVNFRSDRAREIVSALGNENFSEFQRKKWLKIPLITMTPYDKNFDFPILFPKENIPNTLA EVISKHHLRQFHTAETEKYAHVTFFFNGGLEEPYPNETRVLIPSPKVKTYDQKPEMSAKE VGDCVLKAIQENYDFIVVNFANGDMVGHTGVYEAAIKAVEAVDSEIGRIYESAKQNGYAF VLTSDHGNCEEMQNDKGEILTNHTTGEVWCFISAPNVQKVQNGGLNNIAPSILKLMGLEI PKEMDNPLF Prediction of potential genes in microbial genomes Time: Tue May 24 02:44:33 2011 Seq name: gi|197282983|gb|ABQU01000067.1| Helicobacter pullorum MIT 98-5489 cont2.67, whole genome shotgun sequence Length of sequence - 1495 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 1494 1452 ## gi|242308791|ref|ZP_04807946.1| predicted protein Predicted protein(s) >gi|197282983|gb|ABQU01000067.1| GENE 1 3 - 1494 1452 497 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308791|ref|ZP_04807946.1| ## NR: gi|242308791|ref|ZP_04807946.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 42 395 1 335 339 286 60.0 3e-75 LDSNSKTSRTLESQNPNKIQTAKIQSPKVSKDLANPQSPKVLESNLKLDSKNTRESKKIQ RVKNTYDSTNSQKSKESSKVKSLIRTIPVSIALASALSSHAVADWQIGRGTNIDLKQLGT IQNGGIIVDNINYKFQTSQDIARNSFLYGIADNQTGSDLTINNNSSIAFYATNGPMIKVG GNAIAGIITNSGTLIRERFGGINNYKPALDMGTNAYAQAFINNGRMYWAGTQVIALWSNS HIGIIKNTGTIQTEGVLVGIGNNNTNNITIDSIELEGGLIQHIDNSSSANNVIPTTGDVI SLTNANIGTITMSNSASIHGNISLSGTRITDKISFSDSNMTGNISLGGSQVANGISIDNS KISGDISIAAGSGVNSTIANGVTLTNNSTIRDFTLDNGSSILNGLTLSGKSTITNLNITK RGNLDELLLSQGTINGNLKVEGNANGTDTNTATIGEITLENSSTITGNINIKGNSADNNA KIGTITLESGTGIGGSI Prediction of potential genes in microbial genomes Time: Tue May 24 02:44:53 2011 Seq name: gi|197282982|gb|ABQU01000068.1| Helicobacter pullorum MIT 98-5489 cont2.68, whole genome shotgun sequence Length of sequence - 540 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 539 607 ## gi|242308795|ref|ZP_04807950.1| predicted protein Predicted protein(s) >gi|197282982|gb|ABQU01000068.1| GENE 1 2 - 539 607 179 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308795|ref|ZP_04807950.1| ## NR: gi|242308795|ref|ZP_04807950.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 6 179 66 232 381 95 58.0 1e-18 LGTFINSGTINGNINNEGTITSIDNSGVITGEIVSGSSGQTSQIDKIINTGTIGTAKTKV ATFKTLVASNQDASSNFSDAISLNTITTTEIRNGGLINGNIRVKGQSDIQELNNTNTIDG CIILEGGRIGNINNANGAIANCMSFSSGANVDNISNSGTIKDKITNNSGSITVNNSGSI Prediction of potential genes in microbial genomes Time: Tue May 24 02:45:02 2011 Seq name: gi|197282981|gb|ABQU01000069.1| Helicobacter pullorum MIT 98-5489 cont2.69, whole genome shotgun sequence Length of sequence - 1565 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1563 1243 ## gi|242308791|ref|ZP_04807946.1| predicted protein Predicted protein(s) >gi|197282981|gb|ABQU01000069.1| GENE 1 3 - 1563 1243 520 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308791|ref|ZP_04807946.1| ## NR: gi|242308791|ref|ZP_04807946.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 98 391 17 316 339 83 35.0 5e-14 ILKSKIQDSKIQLESNSPKLKDSNSKLESKNPNKIQSSKASKDLVNLESQKVVESNLKLD SKTRQKSNKESESKLPKIQRVKNTYDSITIQNSTNSQKSKESSKVKSLIRTIPISIALAS ALSSNVAAAQWSIAGIYTGRQNVQQDSSGNVTVNGNLDLNDGSVIFQVAENQTAGNFLIN SGVLLKSLRTGMSVPDLWKLNAGASAGTIENRGTILINSIPSASRYLNMGNDSTLKSFIN SGTMINETGGSSSYYIVAVWSRAVMENFTNTGSIIAKDGAIYLNGGTIQNFNLTGSKSLL KAETANVDVIQLNTNNGSNARIDNFEVSNGATIEGNISLRNASSITNGITIINSGSLQGH ISLTGNARIQGGIVLDNASTITGNISLTNSNNNNTMSIDNISLTNSTIGGTISLSETASD YNKSTNTLTSLTLSDSHLGGISLTGNSLITNGIMANSSTIDNITLAGNSNSGAKPTIVNG VSLDNSEVTGDISLDNSSVIMGGFTLGNNSTIANLNILKR Prediction of potential genes in microbial genomes Time: Tue May 24 02:45:36 2011 Seq name: gi|197282980|gb|ABQU01000070.1| Helicobacter pullorum MIT 98-5489 cont2.70, whole genome shotgun sequence Length of sequence - 55303 bp Number of predicted genes - 60, with homology - 59 Number of transcription units - 23, operones - 15 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.429 - CDS 132 - 410 357 ## COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB 2 1 Op 2 . - CDS 410 - 1021 768 ## COG0307 Riboflavin synthase alpha chain - Prom 1074 - 1133 8.3 + Prom 1005 - 1064 6.4 3 2 Tu 1 . + CDS 1131 - 1940 705 ## COG0084 Mg-dependent DNase 4 3 Tu 1 . - CDS 1942 - 2475 477 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes + Prom 2464 - 2523 6.8 5 4 Op 1 . + CDS 2572 - 3903 1738 ## gi|242309112|ref|ZP_04808267.1| conserved hypothetical protein 6 4 Op 2 . + CDS 3904 - 4527 562 ## COG0194 Guanylate kinase 7 4 Op 3 . + CDS 4557 - 7811 4129 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 8 4 Op 4 . + CDS 7815 - 8276 211 ## WS2146 hypothetical protein 9 4 Op 5 . + CDS 8279 - 8749 455 ## gi|242309116|ref|ZP_04808271.1| predicted protein + Term 8855 - 8891 -0.7 10 5 Op 1 2/0.429 - CDS 8728 - 9636 858 ## COG1897 Homoserine trans-succinylase 11 5 Op 2 . - CDS 9646 - 10938 1280 ## COG2873 O-acetylhomoserine sulfhydrylase - Prom 10964 - 11023 10.4 12 6 Op 1 . - CDS 11318 - 11482 268 ## gi|242309119|ref|ZP_04808274.1| predicted protein 13 6 Op 2 . - CDS 11492 - 12796 1209 ## WS0783 putative periplasmic protein 14 6 Op 3 . - CDS 12816 - 13826 846 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase - Prom 13935 - 13994 8.6 + Prom 13871 - 13930 16.6 15 7 Op 1 . + CDS 13964 - 14671 798 ## COG0670 Integral membrane protein, interacts with FtsH 16 7 Op 2 . + CDS 14675 - 15085 423 ## COG0352 Thiamine monophosphate synthase + Term 15324 - 15383 -0.7 17 8 Tu 1 . - CDS 15075 - 15971 1063 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 15996 - 16055 6.9 18 9 Tu 1 . + CDS 16088 - 17473 1604 ## COG1160 Predicted GTPases + Term 17475 - 17510 -0.5 19 10 Tu 1 . - CDS 17675 - 17932 429 ## CJJ81176_pTet0018 cpp23 - Prom 17958 - 18017 10.4 - TRNA 18042 - 18117 86.9 # Val GAC 0 0 - Term 18032 - 18075 2.3 20 11 Op 1 3/0.000 - CDS 18143 - 18604 257 ## COG0597 Lipoprotein signal peptidase 21 11 Op 2 . - CDS 18601 - 19938 1770 ## COG1109 Phosphomannomutase - Prom 19980 - 20039 7.7 + Prom 19956 - 20015 11.3 22 12 Op 1 3/0.000 + CDS 20046 - 20321 443 ## PROTEIN SUPPORTED gi|239524170|gb|EEQ64036.1| 30S ribosomal protein S20 23 12 Op 2 . + CDS 20349 - 21419 1277 ## COG0216 Protein chain release factor A + Term 21669 - 21718 -0.8 + TRNA 21479 - 21569 66.4 # Ser GCT 0 0 + Prom 21495 - 21554 80.4 24 13 Op 1 1/0.571 + CDS 21730 - 22167 258 ## COG1832 Predicted CoA-binding protein 25 13 Op 2 . + CDS 22164 - 23372 1342 ## COG1171 Threonine dehydratase 26 13 Op 3 . + CDS 23376 - 24572 708 ## WS0133 putative integral membrane protein 27 13 Op 4 . + CDS 24502 - 25227 655 ## WS0134 hypothetical protein + Prom 25245 - 25304 6.1 28 14 Op 1 3/0.000 + CDS 25392 - 26075 602 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 29 14 Op 2 . + CDS 26089 - 28065 2119 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily + Prom 28148 - 28207 10.8 30 15 Op 1 . + CDS 28362 - 28922 523 ## HH1170 hypothetical protein 31 15 Op 2 . + CDS 28988 - 30049 857 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 32 16 Op 1 . - CDS 30035 - 31066 523 ## COG0117 Pyrimidine deaminase 33 16 Op 2 3/0.000 - CDS 31060 - 31491 510 ## COG0779 Uncharacterized protein conserved in bacteria 34 16 Op 3 32/0.000 - CDS 31481 - 31852 319 ## COG0858 Ribosome-binding factor A 35 16 Op 4 . - CDS 31856 - 34504 2956 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 36 16 Op 5 . - CDS 34504 - 34725 141 ## gi|242309144|ref|ZP_04808299.1| predicted protein 37 16 Op 6 . - CDS 34765 - 35658 797 ## COG0083 Homoserine kinase 38 16 Op 7 . - CDS 35669 - 36208 196 ## PROTEIN SUPPORTED gi|149195045|ref|ZP_01872137.1| 50S ribosomal protein L13 39 16 Op 8 . - CDS 36201 - 36749 583 ## Suden_1810 hypothetical protein 40 16 Op 9 . - CDS 36766 - 37620 655 ## COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases 41 16 Op 10 . - CDS 37620 - 38162 511 ## COG2928 Uncharacterized conserved protein - Prom 38188 - 38247 11.6 - Term 38185 - 38230 0.1 42 17 Op 1 . - CDS 38311 - 39540 721 ## COG0658 Predicted membrane metal-binding protein 43 17 Op 2 . - CDS 39605 - 40429 864 ## WS0007 hypothetical protein - Prom 40455 - 40514 9.8 - Term 40473 - 40520 -0.7 44 18 Op 1 . - CDS 40676 - 40951 275 ## COG3041 Uncharacterized protein conserved in bacteria 45 18 Op 2 . - CDS 40941 - 41222 428 ## JJD26997_0962 hypothetical protein - Prom 41347 - 41406 6.0 + Prom 41035 - 41094 8.7 46 19 Tu 1 . + CDS 41292 - 41408 64 ## + Term 41545 - 41579 1.1 47 20 Tu 1 . - CDS 41416 - 42465 988 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain - Prom 42536 - 42595 6.3 48 21 Op 1 . - CDS 42603 - 43022 357 ## COG3787 Uncharacterized protein conserved in bacteria 49 21 Op 2 . - CDS 43087 - 43668 538 ## WS0159 putative recombination protein RecO 50 21 Op 3 . - CDS 43708 - 44490 1050 ## COG2022 Uncharacterized enzyme of thiazole biosynthesis 51 21 Op 4 . - CDS 44520 - 45965 386 ## PROTEIN SUPPORTED gi|126666946|ref|ZP_01737922.1| Ribosomal protein S15 - Prom 46006 - 46065 6.8 + Prom 45984 - 46043 5.8 52 22 Op 1 . + CDS 46065 - 46472 363 ## gi|242309160|ref|ZP_04808315.1| predicted protein 53 22 Op 2 3/0.000 + CDS 46552 - 47265 844 ## COG0528 Uridylate kinase 54 22 Op 3 18/0.000 + CDS 47280 - 47498 358 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 55 22 Op 4 3/0.000 + CDS 47537 - 49684 1782 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 56 22 Op 5 3/0.000 + CDS 49694 - 50908 347 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 57 22 Op 6 3/0.000 + CDS 50920 - 52014 1155 ## COG2070 Dioxygenases related to 2-nitropropane dioxygenase 58 22 Op 7 . + CDS 52056 - 53102 1007 ## COG0860 N-acetylmuramoyl-L-alanine amidase 59 22 Op 8 . + CDS 53112 - 53957 538 ## HH0827 hypothetical protein 60 23 Tu 1 . + CDS 54309 - 55302 877 ## COG3210 Large exoproteins involved in heme utilization or adhesion Predicted protein(s) >gi|197282980|gb|ABQU01000070.1| GENE 1 132 - 410 357 92 aa, chain - ## HITS:1 COG:jhp1483 KEGG:ns NR:ns ## COG: jhp1483 COG2257 # Protein_GI_number: 15612548 # Func_class: S Function unknown # Function: Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB # Organism: Helicobacter pylori J99 # 8 91 6 89 90 90 57.0 5e-19 MPLPPPQKAVALAYEQNKHRAPKVLAKGEGLIAQKIIEKAKEYDIPLFQSKALVDSLIHL EIDEEIPPELYKAVVEVFIWLYKTESKAQMSN >gi|197282980|gb|ABQU01000070.1| GENE 2 410 - 1021 768 203 aa, chain - ## HITS:1 COG:Cj1218c KEGG:ns NR:ns ## COG: Cj1218c COG0307 # Protein_GI_number: 15792542 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase alpha chain # Organism: Campylobacter jejuni # 1 199 1 199 203 235 56.0 5e-62 MFTGLVREFAKVQSLRQNTLTLQAKYKPKIGDSIAVNGACLTAIEVFNGGFSLELSEETQ SHIALESYKDLVHIEPALRLQDRLDGHLVQGHIDGIGKIAKIIPHQIGTDFFITAQKEIL ELCIPKGSIAINGISLTINEVLEDSLRLTIIPHTLKTTLFQTYQVNMRVNIETDMFARMI QHFLHKKHSTLTWEKVDRILGSY >gi|197282980|gb|ABQU01000070.1| GENE 3 1131 - 1940 705 269 aa, chain + ## HITS:1 COG:Cj0644 KEGG:ns NR:ns ## COG: Cj0644 COG0084 # Protein_GI_number: 15792004 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Campylobacter jejuni # 1 262 11 267 271 282 54.0 4e-76 MQLCDTHCHLDDKRFEGDFEAVLERAKKAGITRFVIPAAHLEDLERARELAHKYEEVYFA SGLHPNYAYLYDEEFLKSFLGDEKCVAVGECGLDYYRLEEALAESKLGSIEELKRIQKEV FVAQIKLAMAYEKPLIVHIREASLDSLEILQKYAKDLKRGGVLHCFNADFQLLSLAKEGF YYGIGGVLTFKNARKLVEVLPKIPLESLLLETDAPYLTPHPHRGERNEPAYIPLVLEKMS EILGIPKEILIKQININTENLFGEVFGAA >gi|197282980|gb|ABQU01000070.1| GENE 4 1942 - 2475 477 177 aa, chain - ## HITS:1 COG:jhp0306 KEGG:ns NR:ns ## COG: jhp0306 COG1502 # Protein_GI_number: 15611375 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Helicobacter pylori J99 # 24 174 27 177 180 154 52.0 8e-38 MLKKLFCIFCFYFLFSPFVFSKELYFMPQEQEKAIKSLIQTIKSSQKTLDIAIYSFTNRE ISKAIRDTAKKGVKVRIIYDKKSNKDNDYSTIGYLAKLKNIQTCLLEGNRSYNGKYNGLM HTKMAIIDDKHLILGSANWSKSAFETNYETLLILQDKDFIQKAHKSFNAMFNKCEKY >gi|197282980|gb|ABQU01000070.1| GENE 5 2572 - 3903 1738 443 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309112|ref|ZP_04808267.1| ## NR: gi|242309112|ref|ZP_04808267.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] # 1 443 1 443 443 479 100.0 1e-133 MKLYLVNKNPIITKLVSLSVSKINLDMVETQEIDSTLQADILLLDDECYTKETYEQYKQE NSGVKTILFYAKSTERVEGFDEYVQKPFLPTELVRVLSEVSGMQPLDNVVGVANDIQNDE AVDEIETLQEPKAVEPSTQDESNQELDLSEYGELEFEQDIKATKTNGEKPKILDRDDIDE VKQLFEEAKENQENDLDFEEELIEQENHNNEVKGDNQQEIAGGDFSLEDLDLEAGELEEL ESENQANIEDSSKEAVQKNIEDLDIDNLASSIDNLEEELKAQEEFGEEIADEMQLDNQEE GIEQESQESQESQESQESQESQESQESQESQESQESQESQESQESQESQERAANHDEIIN ESSSEDEFDDLNIEAMSEALGEPIAKEPSVVSIVAAEKIQNNPQINSLESLISALQTLQT QSLKDLLSGATINISIQFPKKED >gi|197282980|gb|ABQU01000070.1| GENE 6 3904 - 4527 562 207 aa, chain + ## HITS:1 COG:HP0321 KEGG:ns NR:ns ## COG: HP0321 COG0194 # Protein_GI_number: 15644949 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Helicobacter pylori 26695 # 10 206 7 202 206 185 49.0 4e-47 MEDIKLKGAILILSGPSGAGKSSLYKVLAQEFPNHYFSISSTTREKREDEKEGVHYHFIT KDEFQRNIQEGNFLEWAEVHGNYYGTSKKSVLEALQKNQLVIFDIDVQGQENIKKAFPHH TTSVFVTTLNKSILQDRLNQRGSNENEDMNKRLKNASSEIKKLGEFDYLIINQDFEESAQ KLVCIAKTAFCKASLYPLELLVQKWEK >gi|197282980|gb|ABQU01000070.1| GENE 7 4557 - 7811 4129 1084 aa, chain + ## HITS:1 COG:Cj0279 KEGG:ns NR:ns ## COG: Cj0279 COG0458 # Protein_GI_number: 15791649 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Campylobacter jejuni # 1 1083 1 1087 1089 1442 67.0 0 MPKRDDIKTILLIGSGPIVIGQACEFDYSGTQAAKTLKELGYKVVLINSNPATIMTDPEF ADRTYIEPITEEIVADIIKKEKVDAILPTMGGQTALNIAMSMYEKGMLKGVQFLGAKPEA IKKGEDRQAFKEAMLKIGMDLPKSCYAYTLQEALEAAKEIGFPLIIRASFTLAGGGSGVA YNIDEFKALAQNGLEVSPINEILIEESLLGWKEFEMEVIRDKSDNCIIVCSIENLDPMGV HTGDSITIAPALTLTDKEYQRMRDASFKILREIGVDTGGSNVQFAINPQNGRMTVIEMNP RVSRSSALASKATGYPIAKVATLLAVGYTLDEIKNDITGTPASFEPSIDYIVTKIPRFTF EKFPQADSTLTTSMKSIGEVMAIGATFKESLQKALNSLETGVFGFNPISSDLSEIQREIR RPNAHRLLYIAEAFRNGVSVAEVQEWSKIDAYFLHQIAEIIAFEKNISFEMLQIESFLRE AKQNGFSDKMLAFLANKKEGLELREEDIYALRQRLQVNLQYNEVDTCAAEFATQTAYLYS TTPFFPINPTPTSSDKKKVLIIGGGPNRIGQGIEFDYCCVHASFALRDMGITSIMYNCNP ETVSTDYDTSDTLYFEPITFECVRSVIEREKPDGIIVHFGGQTPLKLAKKLTTIGANIIG TSAKTIDIAEDREKFAKFVEENGLLQPKNGTAYTKEEAIGIAQNIGFPVLVRPSYVLGGR AMRIVYNVAELQNYMSEAVSVSEDSPVLIDKFLNNALELDVDIICDGRDVYIAGIMQHIE EAGIHSGDSACSIPTISISKEKIKEIEETTAKIARNLGVIGLMNTQYAIFEDTLYLIEVN PRASRTVPFVSKATGIPLAKVATDVMVNRDLKAALERYDRFKKVEFKDGLYKPKASKHIA VKESVFPFSKLNGAVMVLGPEMRSTGEVMGISESFGVSFAKSQLACKNPIPTSGKVFISL RSLDKPQAEILAKELKEMGFELCATKGTAKAINEAGVECQEALKISEGRPNIGDMLANGE IALAINTSDEASSKDDTDKIRAQVLRNSVPYFTTIEAARVAISAINEIKKVNPNTAKALQ DYLG >gi|197282980|gb|ABQU01000070.1| GENE 8 7815 - 8276 211 153 aa, chain + ## HITS:1 COG:no KEGG:WS2146 NR:ns ## KEGG: WS2146 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 153 1 146 147 117 41.0 1e-25 MYSDSIFLTQSDTTAGFLCEDFKKLNRIKGRNEKQSVIVTLSSLAKLKKIVRVPRLHRKR IRQSHKSTFIYRGKNALVPQSLGVRVVKDSYHSEFLDFFPYLYSTSANPHKKPFDLEFAL KRAEVLVLDKRGLSQKPASFVFRVGNSNLRRVR >gi|197282980|gb|ABQU01000070.1| GENE 9 8279 - 8749 455 156 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309116|ref|ZP_04808271.1| ## NR: gi|242309116|ref|ZP_04808271.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 156 1 156 156 242 100.0 6e-63 MSISRIIQSFLFSILLVFLLFCLFWTGIFANYINYYGIQEFFNPFFGNVFSAKLFFVFVV GFGIAFLVPVICKIARIVYLVALFFCFGLLFPFLGKNVGEFVLAKDKEVMIQGEKKEVHA LYENRFYIVYLGDELNGEEDLAERKKKLIYYEKPES >gi|197282980|gb|ABQU01000070.1| GENE 10 8728 - 9636 858 302 aa, chain - ## HITS:1 COG:Cj1726c KEGG:ns NR:ns ## COG: Cj1726c COG1897 # Protein_GI_number: 15793029 # Func_class: E Amino acid transport and metabolism # Function: Homoserine trans-succinylase # Organism: Campylobacter jejuni # 1 294 1 293 293 352 60.0 5e-97 MPLIIPEEIPAFKLLKDYAFIMGQKRATSQDIRPLEVLIINLMPTKIETENQILALLANS PLQVNITLLSTATYIGKNTPQSHLNRFYVNFETIKNKNFDGAIVTGAPIEHLPFESVKYW NELTTIMDYLKKHCTSTLYLCWGAMAGLHYFHKIPKIPLKEKLFGIFEHSLVENDLLLNG LDEIVKMPHSRHSGIDESYIYQNPNLKILLKGEISGIAALKDEKDFFILGHPEYSKNTLE LEYKRDLEKGLKIKKPLNYFDKKGNPILSWRSSASVMFSNWLNFSVYQDTPFVLENQDSG FS >gi|197282980|gb|ABQU01000070.1| GENE 11 9646 - 10938 1280 430 aa, chain - ## HITS:1 COG:Cj1727c KEGG:ns NR:ns ## COG: Cj1727c COG2873 # Protein_GI_number: 15793030 # Func_class: E Amino acid transport and metabolism # Function: O-acetylhomoserine sulfhydrylase # Organism: Campylobacter jejuni # 8 429 2 422 423 606 70.0 1e-173 MANLKHNNFSQETLALHAGYTYDSQRTLSVPIYQNTAYSFKNLEQAAARFGLQELGNIYS RLTNPTTDVLGARLAAIEGGAFGVPTASGSAAIFYTLVNLAQNGDNIVYSNKIYGGSQTL IVHTLKRFGIEARVFDIDDIENSLPKVIDSKTKAIFFESLSNPQIAIADTQKITQIAKTH KIISICDNTVATAFLHKPFDFGVDIAVYSLSKYINGQGSALGGAVIERQGLNELIKDNPR YPAFNTPDESYHGLVYATLPLPIFSIRLITEWLRNIGATLSPQNAWIILQGLETLELRIQ KHSQNALEVARFLESHPKVKSVNYPGLPNNPYHKLLGKYFKNNHCSGLISFEAQSFEEAQ KICNSLEIFAIVANIGDSKSLIIHPASTTHSQLSPKELESAEITPATIRLSIGLESPKDL IADLKQALEK >gi|197282980|gb|ABQU01000070.1| GENE 12 11318 - 11482 268 54 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309119|ref|ZP_04808274.1| ## NR: gi|242309119|ref|ZP_04808274.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 54 1 54 54 85 100.0 1e-15 MQKHLKENGKQNIILLGGSNSVMVNGLQKGIREGIAKLNERKDEKEQLAFYSFI >gi|197282980|gb|ABQU01000070.1| GENE 13 11492 - 12796 1209 434 aa, chain - ## HITS:1 COG:no KEGG:WS0783 NR:ns ## KEGG: WS0783 # Name: not_defined # Def: putative periplasmic protein # Organism: W.succinogenes # Pathway: not_defined # 9 429 4 424 429 442 50.0 1e-122 MKKRFIWIFILIATTLNILYAKNTPFSLYELKGDSDGATLLVIGGIHGDEPGGYFAPSIL INSYHILKGNVLVVPNLNPDSIMAFKRGIYNDMNRKFATIDKNDPDFDNVARIKEIITNP KVNFIINLHDGHGFYRQKWENSIFNPKAWGQTYVIDQKTLDNILFGNLDEIAKQIENKLN QELHYDFHTFGIRNTETRFKDEEQQNSLTYYAITHLKPALAIETSKNIKELPLKVFYQLS SIEALMDILGIEYTRDFTLDLKSVESKIKSYGTLTINNNITFDLDNIKKTINFVPLLKDN NHFAFKHPLGRTKKVKNGYEVYIGHQKITFLKSDYFPMQCNIQDIEITIDKNITKKVNFG KILDFNEGFLIKKTNARINIIGYSKNGVTSEEEIYLTADEIDKNFSLDKNNQSFRIEVYQ GENFCGMVTMKKEN >gi|197282980|gb|ABQU01000070.1| GENE 14 12816 - 13826 846 336 aa, chain - ## HITS:1 COG:HP0921 KEGG:ns NR:ns ## COG: HP0921 COG0057 # Protein_GI_number: 15645537 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Helicobacter pylori 26695 # 4 334 1 329 332 328 53.0 1e-89 MKKVKIFINGFGRIGRCIARIALCEMQDKIEIVGINDPTNSEVLAYLFTHDSIHHTQKII LESKNLAKNTFTFNGIEIPFSHAKSPSEVDICGADIIIEASGIFLEKESATHYLKKGAKK VIFSAPAKDDTKTFVLGVNHQKYNDEKILSNASCTTNALAPVIKLLDENFGVEKGILTTI HSYTNDQNLIDSAHKKGDFRRSRAAGINIIPTTTGAAKALHLVLPQMKGKLHGHSVRVPV ADVSMVDLNVNLSQKTNKEAINHIFKQASNNELKGILGVDESFGVSQDFLNNPLSGIVAL DLTFVLQENMAKIMIWYDNEWGYSHRILEMACFILK >gi|197282980|gb|ABQU01000070.1| GENE 15 13964 - 14671 798 235 aa, chain + ## HITS:1 COG:jhp0854 KEGG:ns NR:ns ## COG: jhp0854 COG0670 # Protein_GI_number: 15611921 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Helicobacter pylori J99 # 1 235 1 230 230 218 60.0 1e-56 MSLYDRKSINNFEQYSENSYAQSDTALIQFVKQTYQLFAGSLLAATVGAYVGISTLGAIV AQFYIGFVILEFALLFGLFFTKTKPGINLFMLFAFTFVSGLTLTPILSRVLGMPGGAAIV AQAFLLTTAIFGIMSIFALRTKKDLASMGKMLFIALIVVVIGSLINLFLGSPILQVIIAG VSAILFSIFIAYDTQNIVRGLYDSPVTAAVSLYLDFLNLFVSLLQLLGIFNSNNE >gi|197282980|gb|ABQU01000070.1| GENE 16 14675 - 15085 423 136 aa, chain + ## HITS:1 COG:alr1343 KEGG:ns NR:ns ## COG: alr1343 COG0352 # Protein_GI_number: 17228838 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Nostoc sp. PCC 7120 # 4 131 38 166 379 90 39.0 8e-19 MLNQIPDSTLRILDANLNRLREGIRVIEDILRYGFNHKDFALQLKNLRHRCKINNFESLL HSRDSQNDVLKPSTKQEQNRANLKSIVVANFKRAQESARVLEEILKLSEVSKSEEFKEIR YTLYVLEKEILEKFSF >gi|197282980|gb|ABQU01000070.1| GENE 17 15075 - 15971 1063 298 aa, chain - ## HITS:1 COG:Cj0385c KEGG:ns NR:ns ## COG: Cj0385c COG0697 # Protein_GI_number: 15791752 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Campylobacter jejuni # 7 273 10 289 310 150 36.0 3e-36 MYQNRQAIIAMLIAALLFTIMGMFVKILTPNLPVIEVAFARNSFGLIWIIIALMINPPKS QQGGKPFILFFRGFAGGSAMMAYFYNMSVMPLGIAYAFSYTSPIFLALFSVIFIHQKVSI KVWIAIFLGFSGIILISNPQNIHLSLWGLSIGIYSGIGAALAYLSVAELAKNYDPRIIIG SLMFSGSILPLLTQLVPYEHYPIELFAPFVMPNFKEWILILGLGVVSTYAQIYLTKAYGL GNPPVIGAISYVTIFMATLAGIILGDAIPHNLVVIGMILIACGGILAALSTKKRKARN >gi|197282980|gb|ABQU01000070.1| GENE 18 16088 - 17473 1604 461 aa, chain + ## HITS:1 COG:jhp0773 KEGG:ns NR:ns ## COG: jhp0773 COG1160 # Protein_GI_number: 15611840 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Helicobacter pylori J99 # 3 458 6 461 462 477 54.0 1e-134 MDKIYGSIAIMGRPNAGKSSLFNRFCKSRIAITSEVAGTTRDVKKANILILDTPFLLLDT GGIDQSDSLFAKVSEHSHLAGENADLILYLVDGKMPPNEIDKKIFYSLQKKNPNVFLVVN KIDNEKEQEKAWEFAEFGTQNLFFISVSHNRGIGRLEDSIVKLLKKDSLTWLFEGAESEE SLEDFLEAEGADSQSEIINIGIIGRVNVGKSSLLNALLKQERSVVSEVAGTTIDPVDEKG EIEGRRVNFVDTAGIRRRGKIEGLEKFALNRTREVLKRTDIVILVLDASKPFVELDEKIA GLIDEFKLGVIVVLNKWDIAYKDYKAILEDFRLRFKFLEYAPILTISAKNGRHIQKLEQE IVKVYQNFSSRIPTAKLNEIIKEATSRHPIPSDRGKIVKVYYATQFETKPPQIALIMNRP NSLHFSYKRYLVNFLREKFDFSGVRIIFVARGKNSFEEEGS >gi|197282980|gb|ABQU01000070.1| GENE 19 17675 - 17932 429 85 aa, chain - ## HITS:1 COG:no KEGG:CJJ81176_pTet0018 NR:ns ## KEGG: CJJ81176_pTet0018 # Name: not_defined # Def: cpp23 # Organism: C.jejuni_81-176 # Pathway: not_defined # 1 74 1 74 87 87 70.0 1e-16 MKNVVKISILSALVAGIFSACSSESKSVQYYEDPKNAEELAEKIKECKKNANSELNDDEC ANAYKAEYSKSFKKGHYIDPNHFKE >gi|197282980|gb|ABQU01000070.1| GENE 20 18143 - 18604 257 153 aa, chain - ## HITS:1 COG:HP0074 KEGG:ns NR:ns ## COG: HP0074 COG0597 # Protein_GI_number: 15644704 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Helicobacter pylori 26695 # 4 151 6 152 157 115 51.0 4e-26 MIKKHFLIHFFLAVILVLILDQAIKWWFVLSGFEYQGKIISLVLVYNQGVAFSMFAFLQE WLKYLQILLLIGIFIYLWKNQELFKTYCVQIGVIFGGGISNILDRFIHIGVVDYIYWHYK FEFAIFNFADIMINLGVFLIVLQTLLRKDKRAV >gi|197282980|gb|ABQU01000070.1| GENE 21 18601 - 19938 1770 445 aa, chain - ## HITS:1 COG:HP0075 KEGG:ns NR:ns ## COG: HP0075 COG1109 # Protein_GI_number: 15644705 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Helicobacter pylori 26695 # 1 444 1 444 445 582 65.0 1e-166 MKLFGTDGVRGEAGVKLNAFCALKLGIAAGIYYREHSKTNRILVGKDTRRSGYMLENALV SGLTAVGYEVIQIGPMPTPAIAYLTEDMRCDGGIMVSASHNPFMDNGIKFFGKSGYKIDE KDEEVIEKIYHNESLLESAQKTGKEIGSSKRIDDVIGRYIVHIKNSFPKDLSLHGIRVVL DCANGAAYKVAPTIFSELGAEVFVINDTPNGFNINENCGATQPLMLQEEVRRVRADIGFA LDGDADRLVVVDEKGEVVHGDKLIGVLALAAKQNNTLKNNTAVATIMSNYALEEFLAQNG IKLIRSNVGDKYVLESMLAQNLNFGGEQSGHIIFSDFAKTGDGLVSALQTIAYILKSKKQ ASKALDCFKLYPQILKNLNVQSKPNLDSLENYQNLLKEITSKKIRHLIRYSGTENKLRIL LEGKDSKALETTMQECEAFFRGKLY >gi|197282980|gb|ABQU01000070.1| GENE 22 20046 - 20321 443 91 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239524170|gb|EEQ64036.1| 30S ribosomal protein S20 [Helicobacter pullorum MIT 98-5489] # 1 91 1 91 91 175 100 6e-43 MANHKSAEKRIRQTKKRTERNRYYKTRIKNMTRSLKEAIEAKDASKSQEVMKQINQAFHS YVSKGILKKNTAARKVSRLNASVKKLILANA >gi|197282980|gb|ABQU01000070.1| GENE 23 20349 - 21419 1277 356 aa, chain + ## HITS:1 COG:HP0077 KEGG:ns NR:ns ## COG: HP0077 COG0216 # Protein_GI_number: 15644707 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Helicobacter pylori 26695 # 1 348 3 350 352 484 75.0 1e-137 MLASKLKPFIERYEEISALLIKPEILNDIKRITELSKEQSDLEKLVQKSKQYLQNLQSIE ENKSLLDDKELGDLAKEEIKEAEAQNQELESEIKVLLLPKDPNDEKNIYLELRAGTGGDE AGIFVGDLFKAYVRYAESKGWKVEIISSNENNFGGYKEVIALIKGKGAYSRLKYEGGTHR VQRVPETESQGRIHTSAITVAIMPEVDDVEVVINPNDLKIEVFRAGGHGGQCVNTTDSAV RITHIPTGISVSMQDEKSQHKNKDKALKILKARIYEAELEAQMEQNAEARKSQVGSGDRS ERIRTYNYPQNRLSDHRIGLTLYSLEEIMLNGDLDQVIEPIIAYFQAEALQNSGIA >gi|197282980|gb|ABQU01000070.1| GENE 24 21730 - 22167 258 145 aa, chain + ## HITS:1 COG:AGc2308 KEGG:ns NR:ns ## COG: AGc2308 COG1832 # Protein_GI_number: 15888580 # Func_class: R General function prediction only # Function: Predicted CoA-binding protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 8 143 11 140 144 103 37.0 1e-22 MINQDLQIKQILEQSKTIAILGLSPSEDKPSHKVAKYFLEKGYRIIPIYPKGGEILGMKV YRSLQEVFCDESIKQNGGVDILDIFRKSEALLGIIQEISGLENKPKCVWAQLGIQRQGAK EELEAKGIMYFENLCIKLEHQRLCK >gi|197282980|gb|ABQU01000070.1| GENE 25 22164 - 23372 1342 402 aa, chain + ## HITS:1 COG:Cj0828c KEGG:ns NR:ns ## COG: Cj0828c COG1171 # Protein_GI_number: 15792166 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Campylobacter jejuni # 1 401 1 401 403 444 58.0 1e-124 MIALAKIMDASRRLKGVVEHTKLAFAPKLSELSQAKVYVKQENLQNTGSFKLRGAFNKIA TLTQEERKNGVIASSAGNHAQGVAYSAKHYGIRAVIVMPESTPLLKVMGVKELGAEAILH GNNYDEAYAYALEYAQKNNLHFIHPFADDEVIAGQGTIALEMIEDQNNLTTIVVPIGGGG LISGIAAAYKQMLPSVRIVGVVAQGAPGMYHSFYKKAIQTTKSVRTIADGIAVRDVNERN FDYILESVDEIVMVDDEEIANAILYLLEKQKLVVEGAGAAAVAALLHHKFKIAQNESVGL VLSGGNIDVTMLGVIIEKGLVRSHRKMRFSVVLIDKPGSLQSLSDLLSRLGANIVKIDFD RTSTSLGYGDANVVVVIETKGKEHQDEIRRELHKDGYKFVEM >gi|197282980|gb|ABQU01000070.1| GENE 26 23376 - 24572 708 398 aa, chain + ## HITS:1 COG:no KEGG:WS0133 NR:ns ## KEGG: WS0133 # Name: not_defined # Def: putative integral membrane protein # Organism: W.succinogenes # Pathway: not_defined # 14 396 13 396 397 252 44.0 2e-65 MLAESRKIYFYLCVLLIADFLILLWVGKNLSISYDEASHFFEPLDFGGFLSNLSVFLFGQ NDIGLRMLFLLLHLCNAVLMFIFAKGFLKRPSDALFCVLLFLLLPGVNAAAILISNSGII IFLTLLLCILYQQTHKIPYWLLLIMAFVDKSFALVFLALIFYGIAQKNTFLVFLSLIFFA LNMYLFDLEIGGHPAGYFIDTSGHLLLIFSPLVFLYFLYALYRFYNSKTKPLIWYISIVA LGFILFLSLRQKVETETFAPLLIVGIPLMVSLYFSGLRVRLPEFKSRYKIPFGITLLVLL AMVLVLLFSKPLFALFSSNQEEYFAYRHYLAKELAQNLKEQNIFQVNTNERMQKRLRFYG INQGGNVKITTHFVKNAKEIPIFYYGKKVAVFYVQKSL >gi|197282980|gb|ABQU01000070.1| GENE 27 24502 - 25227 655 241 aa, chain + ## HITS:1 COG:no KEGG:WS0134 NR:ns ## KEGG: WS0134 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 31 241 1 212 214 87 30.0 3e-16 MQKRFLFFIMAKRLQCFMSKKAFSLFEILLVLAIIGILGTVGYVIYPQSLLNLAQEQIVN HLNYTRFLALNSSKQIMQNAFCQSDFCQEERERYQESFWRLQFADLKNIGWAYSVFSDSA RSSKTKNFDDRPMDSFEVARDSMSGKYLSVYTYNNTKFANGLREGDLSISKRYGVSKVQM YGGCGKQNGGRILFDDLGFVRCKKSGEKVSYPDGEVILELMDNFGASVRICISENGLVEK C >gi|197282980|gb|ABQU01000070.1| GENE 28 25392 - 26075 602 227 aa, chain + ## HITS:1 COG:Cj1711c KEGG:ns NR:ns ## COG: Cj1711c COG0030 # Protein_GI_number: 15793014 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Campylobacter jejuni # 3 223 33 251 266 175 46.0 6e-44 MELIEIGAGLGDLTNKLLGLGNITAYEVDEELLPYLKERFKKALESKQLELKIGDVMEIW KGNSLRDKPYFLISNLPYYIATLLVIKAIKDPLCKGCVVMTQKEVALKFCASENQSDFSA LSVLTQSVGEAKLLFEVPPIAFVPQPKVTSAVFLIQKNQILPSDFLEALEGLLKISFNAP RKTIFNNLSKNYSKQKVLEVLEDLQITPNKRPHEIDTATYHRLLKIL >gi|197282980|gb|ABQU01000070.1| GENE 29 26089 - 28065 2119 658 aa, chain + ## HITS:1 COG:Cj1710c KEGG:ns NR:ns ## COG: Cj1710c COG0595 # Protein_GI_number: 15793013 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Campylobacter jejuni # 1 655 3 661 664 779 59.0 0 MEEKETQNNTQNTNSQKEPNKRRFKPRNQQDRTREEKQGQEGQSRNHYRHKKSQNNSGQN GEKFHNRNGGNREVNQSNLELRKAVEVNAKVHQNSLTTHSQVQFNPNGKVRITPIGGLGE IGGNMTVIETQNSAIIIDAGMSFPDGDMHGIDILVPDFSYLEVIKDKIAGIVITHAHEDH IGAMPYLFKKYQFPIYGTPLPLGLIGSKFDEHGLKKYRSLFRAVEKRKPIRIGEFEIEWI HITHSIVDSSALAIKTEAGVIFHTGDFKIDHTPIDGYPTDLNRIAYYGEQGVLLLLSDST NSHKAGYTPSEASVGPAFDMLFSRAKGRVIMSTFSSNIHRVYQAIQYGLKYGRKISVIGR SMEKNLEIARTLGYIDLPQNIFIEAHEVAKYADEEVLIVTTGSQGETMSALYRMATDEHR HIKIKPSDIVILSAKAIPGNEGSVSNILNFINKAGAKVYYQDFSEIHTSGHAAQEEQKLM LRLVKPKFFLPVHGEYNHILKHKETAISCGVDEKNIYLMEDGDQIEIAHNYLRKVRSVKT GKIYIDNQINAFVANDVVLDRQNLAENGIVIVVVQIDKAKNAVIGKPRIQTMGIIANKDI LSFNKEIEEFFSLFVKNCKKELYSSQKAMENEIRNALRKLMFKKTKRYPTIVPNVIFS >gi|197282980|gb|ABQU01000070.1| GENE 30 28362 - 28922 523 186 aa, chain + ## HITS:1 COG:no KEGG:HH1170 NR:ns ## KEGG: HH1170 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 6 186 3 191 191 175 47.0 9e-43 MARKIISNKTWMQVHLYVSLFFIPMALIYAITGSLYIFNIRQNAGAEIKEVRIQDAIPKG SEREVMLRILQENKLEIPSNTEVRFFKGSHSMGTLKYQVLLTQDKNSPSYTLRAIDRNWY GVLLLLHKAAGKYYFDILAVGFSIALVLLYLSGLFLTAFCKRDRKGSSIAIILGILVTTL AVYLSI >gi|197282980|gb|ABQU01000070.1| GENE 31 28988 - 30049 857 353 aa, chain + ## HITS:1 COG:HP1226 KEGG:ns NR:ns ## COG: HP1226 COG0635 # Protein_GI_number: 15645840 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Helicobacter pylori 26695 # 1 352 6 351 352 287 46.0 2e-77 MEVAVYLHIPFCDSKCGYCAFNSKTNKNHLKHQYMQRLCDDLAEQLAFYGVSKITSVYIG GGTPSVVESSKYQRIFEILYPFLEGNAEVNIEANPNSLTLEWMKNLKSFGVNRLSLGVQS FFAEKLRFLERIHREVSIYEAMENALKVGLENISIDLIYGTPFCAKEILEQEVQMASKLP INHISAYQLSIDEGSRFFVQQKREFSGEFEGYPSMGHFMKECLGQQGFVQYEVSNYARGY YSKHNLGYWEQKEYLGIGAGAVGCINGIRTYGVCEIEDYLKGKSGDREILKSKDIELEHL FLGLRSCVGVLESKITKKKALEILLNEKKVEKKENKIYALDYFLGDELALFLG >gi|197282980|gb|ABQU01000070.1| GENE 32 30035 - 31066 523 343 aa, chain - ## HITS:1 COG:Cj1622_1 KEGG:ns NR:ns ## COG: Cj1622_1 COG0117 # Protein_GI_number: 15792927 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine deaminase # Organism: Campylobacter jejuni # 2 177 11 177 177 139 41.0 6e-33 MVESLYLELAIKEAWKTQCQTLPNPAVGAAILDKNGKLLSINAHQEAGKPHAEVLALKNA YFHLTQDSAILSLQESHQIHQYLKQNAKDIFHNSTLYTTLEPCMHEGKTPSCASLIKSLG IKNLVVAAKDPNPKAQGGAEYLANSNIKVTKIWEDSQFNTLAIKAQELLLPFNLLQKKGS FVLFKYACRLDGSIDGGQISSKETQIFMHNLRSKLNNLIISGKTILLDNPTLDSRFCSLE NKNPPNITILTKNSNFPQTAPLFAIPNRKVEICHSIPNFSGFVMCEGGNNLLESLLPHID MLLVFVSPTLSTYHLTHHFQAHFKLLHCQMIGNDIALWLLPQK >gi|197282980|gb|ABQU01000070.1| GENE 33 31060 - 31491 510 143 aa, chain - ## HITS:1 COG:Cj0138 KEGG:ns NR:ns ## COG: Cj0138 COG0779 # Protein_GI_number: 15791526 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 11 143 3 140 140 108 45.0 2e-24 MLISQELQAKIQKLVESFGCKIYDITTLKENENQILRISITKKPSVSLDDCQEVSLALSP LLDVEIPNFEKYYLEVSSPGIERPLKTKEHFEDAIGELIKIKTISKQDFKGKLIAIDDES LKLESGEIIPISEIKKAQTYFEW >gi|197282980|gb|ABQU01000070.1| GENE 34 31481 - 31852 319 123 aa, chain - ## HITS:1 COG:Cj0137 KEGG:ns NR:ns ## COG: Cj0137 COG0858 # Protein_GI_number: 15791525 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Campylobacter jejuni # 4 117 6 119 120 106 48.0 1e-23 MKNIKLERTQSLLKELIPTALANLNDTRLNALNVIEVKCSRGKYSAQVFLDSSSLDKQEQ KEILNQLKKAKNLIKEYCLEETGWFRCPDFQFFFDESLEIENKLDKIFRTIEQEKQKRNI DAN >gi|197282980|gb|ABQU01000070.1| GENE 35 31856 - 34504 2956 882 aa, chain - ## HITS:1 COG:HP1048 KEGG:ns NR:ns ## COG: HP1048 COG0532 # Protein_GI_number: 15645662 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Helicobacter pylori 26695 # 4 882 5 944 944 787 51.0 0 MDKIRISQIAKEIGKTSKEILQKAQELGFEVKTASSAVTTEQAEELYNYVLSGKSVEIKT SKEETKKSTKTEKTTKTKKEESKLKKTKEDEIDKKTRTKTSTKDSKKESPKIATKEVLQE ENPQESPKTQQESPKQDLPITPQENSTIKRTGLRIVKKRDLKTEEIPQTPMEEKKEPSKT LQDLLGNFDNDSFAKKDKKKKKEKSNLQHTKKPNQQKIDLLDNREFQSSDDEEEEGIILF DLSVQDEVNLDEEENEKRATTERIKIQRHNPFMEQGSTRRSSRKKAPKPQKTQETIQGIV NIPEEIRAYEFAEKIGRSTGDVIKVLFSLGMMVTKNDFLEKDAIEILAEEFGIQIEITNN ADELDYTQLHESNENEKDLVERAPVVTIMGHVDHGKTSLLDYIRNTKIASAEAGGITQHI GAYTITKNGKQITFIDTPGHEAFSEMRARGASVTDIAIIVIAADDGIKPQTIEALNHAKA ANAPIIIAVNKIDKPEANTDKVKAEAAELGFTPLEWGGEYEFVHISAKTGEGIDDLLETI LLQAEILELKANPNKPARAVVIESSLEKGKGPVATLIVQNGTLKVGDSIIADTAYGRVRA ISDDLGKNITTITPSGVGVITGLNEVPPAGSILLAVENDNIARDYAQKRAAHLRQKELSH STKVSFDELSSMVAQGQLKNLPVIIKTDTQGSLEAIRGSLEKLQNDEVKVNIIHKGVGGI TESDITLAAASTNCVILGFNVRPTGSVKNKAKELGIEIKTYSIIYALIDDIKALLGGLLS PVFEEENTGQAEVRETFNIAKVGTIAGCFVTDGVIQRGIKVRLIRNGVVIHTGNIASLKR FKDDAREVQKGFECGIMLENYNDIQVGDVFETYKEVAKQRTF >gi|197282980|gb|ABQU01000070.1| GENE 36 34504 - 34725 141 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309144|ref|ZP_04808299.1| ## NR: gi|242309144|ref|ZP_04808299.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 73 7 79 79 136 100.0 5e-31 MCIVCRERFAKEQLTRLQYKDLAIHLFRGEGRSFYVCKACQNTPNFINAVTRIHKIDKKH KEILKESLKEIFT >gi|197282980|gb|ABQU01000070.1| GENE 37 34765 - 35658 797 297 aa, chain - ## HITS:1 COG:HP1050 KEGG:ns NR:ns ## COG: HP1050 COG0083 # Protein_GI_number: 15645664 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Helicobacter pylori 26695 # 1 294 1 293 293 308 51.0 7e-84 MLLRVPATSANLGPGFDSLGLALELYNYFSLKPSKFTSIQIHGEGAKNPKLRIDNVFVRI FNEQLKKLIGKTLPFKFTFENSIPISRGLGSSSAVIIGAISAAFKVAQIPIDKQKIVNIA LHYESHPDNITPACMGGFNACMLSRNQVRFLKKTLPNSIQAVIVIPNQSISTHLSRKTLP QKYSQKDAIFNLSHSTLLASAFFEEKWDLLREASMDKFHQFFRMRQIPILFEVQKTALNH GALMSTLSGSGSTFFNLCYKEDSANLCEVLTNKFPKLKVLTLKFDNFGMVFDDEFKL >gi|197282980|gb|ABQU01000070.1| GENE 38 35669 - 36208 196 179 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149195045|ref|ZP_01872137.1| 50S ribosomal protein L13 [Caminibacter mediatlanticus TB-2] # 1 178 1 155 156 80 29 3e-14 MNNENMILWIGGGIALVFILLIIYLYLKDYESARKARRYENSIEDLNKEIYRLQKKFKEQ ENDLEKFKQSFKQQIYQETRLEMKNLIDSNLYAQISPIKTHLSSLREKYEEYQDNIDNKI IALEERIKEFAYTPSNPNNIDEGRIISMYKDGWSVDSIAKELRIGKGEVEFTLKFANLD >gi|197282980|gb|ABQU01000070.1| GENE 39 36201 - 36749 583 182 aa, chain - ## HITS:1 COG:no KEGG:Suden_1810 NR:ns ## KEGG: Suden_1810 # Name: not_defined # Def: hypothetical protein # Organism: T.denitrificans_ATCC33889 # Pathway: not_defined # 8 175 4 171 173 125 39.0 1e-27 MENFEKSRLINTALQIQYQKAHDNAEEFAIEFNKLTQSDEDPIGEWLRLMRAKKGNLDSE NTIILELLVEIYRKIEILENKIQGETKSYIPLSNKDIITTIGHNCFALKDSKLQENTLYY GRVELPTFPTRIIPIYFIFHTNLAIIEKIHGRDETEWDSYVASKERALIRLMKSNNKEAN HE >gi|197282980|gb|ABQU01000070.1| GENE 40 36766 - 37620 655 284 aa, chain - ## HITS:1 COG:HP1360 KEGG:ns NR:ns ## COG: HP1360 COG0382 # Protein_GI_number: 15645972 # Func_class: H Coenzyme transport and metabolism # Function: 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases # Organism: Helicobacter pylori 26695 # 4 282 8 291 294 263 52.0 3e-70 MFAKIKDFSELVMFQHSIFSMPFIFIAMLTAANGWFGWKLFAFGVIASISARNFAMAFNR YADRKFDSTNPRTKNRPSVDGRISPFAMLVFILINAIVFIFMGWLINPLCFYLSVPILLI LASYSLMKRFTSAAHLVLGLSLGLAPIAGVAAVSGEIPLWSVWLCCGVLFWVAGFDLLYS LQDIEHDKKEGLHSVPRVFGIQNTLWISRLFHLLTLIFWGLFIMQSNRGFLMWFGLIIAV FALAYEHFLVSKNFHNIPKAFFVVNGYLGIVFFGFCLLDLIFTK >gi|197282980|gb|ABQU01000070.1| GENE 41 37620 - 38162 511 180 aa, chain - ## HITS:1 COG:RSc0465 KEGG:ns NR:ns ## COG: RSc0465 COG2928 # Protein_GI_number: 17545184 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 11 179 15 198 243 68 29.0 6e-12 MNQFIAKVSKGIFAILPFLLLFWIFSFVYKFCAAIFYSIFGITNSNLFITLLIFAISLIL LYYIGHLVDKNKEFLLIRITEIIIGKIPVVKSIYSGIKEVLHIFSGKNKEGYLGVAYVNV GEMELMGFITKEEGEYYWVFVPTTPNPTSGFILRIHQKNIKMSDLSVSDGFKKIISLGVK >gi|197282980|gb|ABQU01000070.1| GENE 42 38311 - 39540 721 409 aa, chain - ## HITS:1 COG:jhp1279 KEGG:ns NR:ns ## COG: jhp1279 COG0658 # Protein_GI_number: 15612344 # Func_class: R General function prediction only # Function: Predicted membrane metal-binding protein # Organism: Helicobacter pylori J99 # 7 409 1 404 409 190 36.0 4e-48 MLFLIAILSCILSYKYYQFHTLKSQKSAKIEANVLLQYTKMRGDKSYYVLKLQSNFGTFY TTSWEDLKNLKNKRISLNIILKQVSFVDFLKGFYAPSFNLSLLQGEDFRKPLRDFILSQH QTQLMGEYYLSLFLSDPLPLPWRDLAQSYGIAHIFAISGYHTGILSAIGFFILGLIYSPL HKRYFPYRNRYFDLGMLVLLLLIVYYFLLTQSPSYLRALAMSCVAFFLIFKGLDILKLES FFWSIGILLSFFPSLIFSVGFYFSSFGVLYILLFFKYFKIPRTLFQKLLYGFFLNVFTFF LMGVIVYYFFPPFSPLSLTSLIFTPLFTLYYPLILLAHFFSFGGLLDLLLLWWVNIDTHT ITLQPNLFFFLFCNLLTLLAIFYRYAFYTLFGVNLIYYIYGIYLFAKTP >gi|197282980|gb|ABQU01000070.1| GENE 43 39605 - 40429 864 274 aa, chain - ## HITS:1 COG:no KEGG:WS0007 NR:ns ## KEGG: WS0007 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 5 273 8 281 285 171 37.0 2e-41 MKNRIAVATDFSKKSLMALTKAIYLAKKFQCPLDVLHIVEYSIFHNPKKDKKAGKEALAK FIEDNFPNLEIEMRQFCYVGTIHKEINKHIKEYKCQILCVGATGETQHLTDILLGSVTKQ IIKKSSIPVLVAKNESLPDYINIFSPTDFSDSSTKIAKIAKRIFPEAHLIFYHMINRPFE IRLGHYGADDEQITNFNQNAENKAKEIAKKFLKNFQGSKKEMILDSGILSYTRLLSVAES KNASLIALPTSGKISFFALDVLENSKIDVLIWKF >gi|197282980|gb|ABQU01000070.1| GENE 44 40676 - 40951 275 91 aa, chain - ## HITS:1 COG:VCA0323 KEGG:ns NR:ns ## COG: VCA0323 COG3041 # Protein_GI_number: 15601088 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 5 91 11 98 98 85 52.0 2e-17 MQNKYSITFSKQFKKDFKKINKDDKIILKNIVDKLANDETLEAKYKDHALKGNYIGFREC HIKPDLLLIYRKRDDILELYLASLGNHNNIF >gi|197282980|gb|ABQU01000070.1| GENE 45 40941 - 41222 428 93 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0962 NR:ns ## KEGG: JJD26997_0962 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 1 93 1 94 94 84 74.0 1e-15 MFDYAKYENATQKEIIHALNLTQRKSEKLNQQLKENREIFKFLQKKLKESFSSKKTKKEK RRPELDEAIRQYENGEVEHYSSVEEAFKALNAE >gi|197282980|gb|ABQU01000070.1| GENE 46 41292 - 41408 64 38 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFGLKKNGDKNSKKEIIEGFEKCPFVQEMQGHYNIYLV >gi|197282980|gb|ABQU01000070.1| GENE 47 41416 - 42465 988 349 aa, chain - ## HITS:1 COG:HP1335 KEGG:ns NR:ns ## COG: HP1335 COG0482 # Protein_GI_number: 15645948 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Helicobacter pylori 26695 # 3 346 20 359 360 346 51.0 3e-95 MKKVLLLMSGGVDSSYCAYLLQKQGYSVYGIYLKLHNKDEKHQYYTQNIQKCSEYLKIPY QIVDERELFKKSVYDYFVESYKQGLTPNPCAMCNPNVKFHIAFKLAKELNCDFVATGHYA QIQNGRIAQAVDTHKDQSYFLFGLKQEWIDRIIFPLGDKKKEEIKPIALKELPWLGTLET YKDSQEICFVENSYIDILQKYYNTDKTGDVLDSKGNKIGTHKGYMQYTIGKRKGFTIKGA LTPHYVLKINPKDNTIIVGDKEELATTQVQALNLSLPQEWFEDKRQIDCEVKIRYKSHKI PAKISLENKNNQNIITAHLKEAAYGVANGQALVLYEGNQVLGGGFIGTF >gi|197282980|gb|ABQU01000070.1| GENE 48 42603 - 43022 357 139 aa, chain - ## HITS:1 COG:Cj1449c KEGG:ns NR:ns ## COG: Cj1449c COG3787 # Protein_GI_number: 15792766 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 2 135 1 135 135 112 49.0 2e-25 MMDLKILDFIRQNHLLSLSTIDDDGVYVANCYYAFDTENLTFLIKSDKTSKHIQLAQKSP KIGITIAKDHQNLSLLKGLQIKALFKDASLMQKEIYYSHFPYAKLIKGDIFALEIQWAKY TDNKLLLNQKLFYQKISPS >gi|197282980|gb|ABQU01000070.1| GENE 49 43087 - 43668 538 193 aa, chain - ## HITS:1 COG:no KEGG:WS0159 NR:ns ## KEGG: WS0159 # Name: not_defined # Def: putative recombination protein RecO # Organism: W.succinogenes # Pathway: not_defined # 2 193 12 203 203 177 47.0 1e-43 MREEDLLVRILTSNHIHTLYRFYGARHSIIHLGNKIDFIIEQDLREIGKLREPMHLGFAW EREPNKRYYWQQYLKLLNQHLHDINHIDSFYFKHLEEGAKRLHKEESKRCILNLYAQLLN FEGRKNPLSTCIICEKETSDEIAISRGIICGHKSCIQGEIFQKSHIAQWLNLQGEFLEDL EVEKLWNILMLGL >gi|197282980|gb|ABQU01000070.1| GENE 50 43708 - 44490 1050 260 aa, chain - ## HITS:1 COG:aq_2178 KEGG:ns NR:ns ## COG: aq_2178 COG2022 # Protein_GI_number: 15607113 # Func_class: H Coenzyme transport and metabolism # Function: Uncharacterized enzyme of thiazole biosynthesis # Organism: Aquifex aeolicus # 1 257 8 263 267 303 62.0 2e-82 MNNDTLIIGNQSFKSRLIVGSGKYPDFKTTYEATLASEAEMITVAVRRVNITNPNEENLL DYFKNTKIQFLPNSAGCTNANEAITLFRLTREATGINFIKLEIIGDTQKTLYPDVLETLK ACETLAKDGFVVLAYSNDDPVMAKHLENAGASAVMPLAAPIGSGLGIQNRYNIAFIKSAI KIPVIVDAGVGCASDAAIAMELGADGVLTNTAIAQAKNPILMAQAMAQAVRAGRASYLAG RIPKKPYATASSPTDGLLEF >gi|197282980|gb|ABQU01000070.1| GENE 51 44520 - 45965 386 481 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|126666946|ref|ZP_01737922.1| Ribosomal protein S15 [Marinobacter sp. ELB17] # 26 475 25 491 503 153 27 2e-36 MKNLFFDTKILDSRATQDFLLPSEILMENAARGMAEFICSQFDKHSKILLVCGSGDNGAD CLALARMLAGKYSLGIFLPLGIKSPLCQLQYERLKKVSLCCEIEFLSTLDNSTLAQFNLI IDGIFGIGFKGQLADELKSLITLLNQSCATKIACDIPSGINKSGNPCVLDDKAFAFKADF TLTMGALKTALFSDLAKDFVGEIHCIELGISQQIFSTDSSFRLLESQDFKAPKRKLQNCN KGSFGHLSIFGGEKSGASILAALSGFKIGAGLVSIVSQTPPPNLPYEIMHSCFIPSNTTA ILLGMGFGKETPLPLESLQNFKEIPLLLDADIFYHKDFQNLTQNFKNLILTPHPKEFQTI LKTLCHQEISTQEIQKNRISLALEFSQKYPNITLILKGANSIIAKNGEIFINPLGSNALA KGGSGDVLAGMIGGFLAQSYSPLESCIQGTLAHSLCARNFCKKNADFSLSPLDLITQIRY L >gi|197282980|gb|ABQU01000070.1| GENE 52 46065 - 46472 363 135 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309160|ref|ZP_04808315.1| ## NR: gi|242309160|ref|ZP_04808315.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 135 1 135 135 197 100.0 2e-49 MGYRIIILCLIVFLGCEKPLENKESNNTKETQNFIPNANSLSDDKEKIETPKKSALKQHI ENLSEQLRQKNLDNLQMQHNGTKEHIKHFEEFYNRKDLPKDKSQKGQNSYQNLNKAYELQ LQQMEKLQQKNDEIW >gi|197282980|gb|ABQU01000070.1| GENE 53 46552 - 47265 844 237 aa, chain + ## HITS:1 COG:HP0777 KEGG:ns NR:ns ## COG: HP0777 COG0528 # Protein_GI_number: 15645396 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Helicobacter pylori 26695 # 3 235 8 239 240 298 72.0 8e-81 MARRILIKFSGEALAGESGFGIESGILDYIAMELKTLVDNGIEVGIVIGGGNFIRGVSAS KGGIIRRTSGDYMGMLATVINGVAMQEALEYHGLDVRVQSALEIKEVCETYINRRAMRHF EKGRVVIFVAGTGNPFFTTDTAATLRAVEIEAEMIIKATKVDGVYDKDPAKYSDAIMLKQ ISYEQALRDNIKVMDDTAIALAKDNALPIVVCNMFKKGNLLAILKNEENAIYSKVSN >gi|197282980|gb|ABQU01000070.1| GENE 54 47280 - 47498 358 72 aa, chain + ## HITS:1 COG:jhp0713 KEGG:ns NR:ns ## COG: jhp0713 COG1758 # Protein_GI_number: 15611780 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Helicobacter pylori J99 # 2 69 5 72 74 62 47.0 3e-10 MRTEQIASKALEKVNFDRYLLSNILFARIDELSRGAKPLVNKNVKTDKLADIALLEVAEG KIGLEKVEDLQG >gi|197282980|gb|ABQU01000070.1| GENE 55 47537 - 49684 1782 715 aa, chain + ## HITS:1 COG:jhp0712 KEGG:ns NR:ns ## COG: jhp0712 COG0317 # Protein_GI_number: 15611779 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Helicobacter pylori J99 # 1 713 13 773 776 693 47.0 0 MKFLDKVAAINSPQKATELLYSMVEITPNIEAAIAFATQAHKEQKRRSGEPYIVHPLLVS CIVAHFGGDEVMVCAALLHDVVEDTQYTLDEVRRDYGDDVASLVDGLTKIVAIRAEELPA SHSNEKLVVAALSFRKMLITSVKDVRVLVVKLCDRLHNMLTLGALPPNKQRRISEETLVV YAPIAHRLGISSLKNELEDRSFFYIFPQDYRKIEDYFLNHKQTIQLKLNAFMQKVKKSLI QSGVPEGDFHLESRVKRHYSIYLKMQRKGISIEEVLDLLAIRVIVKNDLDCYKVLGILHL RFKPIMSRFKDYIALPKENGYQTIHSTLFDDSAIFEVQIRTEDMHRSAEYGIAAHWKYKI GGNSGPSLDWLNKLQFQNNSVEEFYELVKNDLYREDIVVFSPDGDNYSLPIGAVVLDFAY AVHTEVGNRAKEAYVNNQKTSLLTTLKSGDIVKIITAKETILRCSWIDAVKTSRAKSQIK MNCASRIKEIEKKSAINIIATIFEKSAEEIEMFVKENGLEESIYKATTDIAFLKDIKNRI KNYYKQKAGFLTQIKIRILKLKELYFDNLVIQTNHTINQAVFDYCCHPKFGDSIIAFKSG SKAFVHHKLCDRAYLEIQKGVKMLYVNWLGDRLQTYKLIVALENQRGVLANFLQFLAKCD INVLGVELGSQKSTYATHCEVRFETHISDVKELRALLGNNYKIIDISAFKDAYAN >gi|197282980|gb|ABQU01000070.1| GENE 56 49694 - 50908 347 404 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 46 401 42 414 418 138 30 8e-32 MSVEKQIELALEEIQRGTQEIIGLDYIKKLVSDYFKEGKTFKVKAGFDPTAPDLHLGHTV LLQKLATFQKYGGRVYFLIGDFTGMIGDPSGKSETRKPLSKEQVLANAKTYQEQVTKVLD SSKMEIVFNSKWLDELGTRGMIELSAKFSVARMLERDDFEKRFKAQSPISIVEFFYPLLQ GYDSVALDCDIECGGTDQKFNLLMGRHLQRAYGMSKEQSVVMVPLLEGLDGVNKMSKSLG NYVGITQEPKEMFGRLLSISDSLMWRYYELLSTKSLQEIAELKEGVEKGSLHPKAVKENL ALEIITRYYNKESAEAAREEFIKVFSKDELPSDMPTFEKNAGIWIAQLMNECALSTSSSE ALRLIKQGGVKINGERLTNTKLNLEAGEYVIQAGKRKFARILIK >gi|197282980|gb|ABQU01000070.1| GENE 57 50920 - 52014 1155 364 aa, chain + ## HITS:1 COG:HP0773 KEGG:ns NR:ns ## COG: HP0773 COG2070 # Protein_GI_number: 15645392 # Func_class: R General function prediction only # Function: Dioxygenases related to 2-nitropropane dioxygenase # Organism: Helicobacter pylori 26695 # 7 364 5 362 363 572 75.0 1e-163 MPYKLELKPLKIGKYTIPLPIFQGGMGVGISWDNLAGNVSKNGALGIISCVGTGYYKNSA FVQRVIKNRPFDTINFYSKESLLEIFKNARKICGENPLGANILYAINEYGRVVRDACEAG ANMIITGAGLPTNMPEFTSNFPNVALIPIVSSAKALKILCKRWEGRYKRMPDAVIVEGPL SGGHQGVSYEDCFKPEYQLESIVPEVLEESKKWGEIPIIAAGGIWDRADIDKMIKLGASG VQMGTRFLGASECDARYYNELMPKIKKEDIELIKSPVGYPARAIVTGVIRELREGRKPKI ACISNCVAPCHRGEEAKKVGYCIADGLGDGYLGDPIKGLYFTGANGYRIEKIQSVKEILD ELTK >gi|197282980|gb|ABQU01000070.1| GENE 58 52056 - 53102 1007 348 aa, chain + ## HITS:1 COG:Cj1269c_2 KEGG:ns NR:ns ## COG: Cj1269c_2 COG0860 # Protein_GI_number: 15792593 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Campylobacter jejuni # 39 347 14 328 329 283 51.0 3e-76 MGGGLEILSIKQTQNGITLRFNQTITKNHFKKFVLENKQELRYVYDIQASLMGSAKSFEI QGTKIKIAQNSPTKVRLVIQTPKKLEIALAVSQKQASFTFPNTNNISIPMLFGKDTSKNS KINTNDKIIVIDPGHGGKDCGAVGVNKTCEKNVVLKIGLYLRDNLKERGYKVYMTRSSDK FVGLRDRTKFANNKNADLFISIHANAIMDNKDELEGVESYFLSTARSERAKKVAALENKD DIEAMNYFSKQSFLNTLNTQRIIASNRLAIDIQYGMLSSLRKEYKIVDGGVREGPFWVLA GAVMPSVLLEVGYITHPKEGKRLSQTKFQKNIAKGIADGVDSYFIRNP >gi|197282980|gb|ABQU01000070.1| GENE 59 53112 - 53957 538 281 aa, chain + ## HITS:1 COG:no KEGG:HH0827 NR:ns ## KEGG: HH0827 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 270 1 275 284 84 28.0 3e-15 MKKITLPHLVFSSLYFILAFFTILTLFLSGVVNDFKQMFRLVTQPFGIYFCTGVTFLLCG VIVSVFNMVRIYSSHLPKLYSAMIFVALCVFGTFLYYELFVLQRTYYDIFSLEDSLKFAT NENAFDKSFYQMVMDYSFYLFFVVFPFIIYFFKLNFDKSTKIGKILQLMQPNINVMIVTL FGFAITSPMKSTADYIDFALLIIGLLMVGFLCLKRKYLIGFYEFLNLLLLLVNCLIIFCF SYFFVDGESYFEVRKAFYFLALFGWCNIWMMKLIIKPNYKD >gi|197282980|gb|ABQU01000070.1| GENE 60 54309 - 55302 877 331 aa, chain + ## HITS:1 COG:Cj0737 KEGG:ns NR:ns ## COG: Cj0737 COG3210 # Protein_GI_number: 15792086 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Large exoproteins involved in heme utilization or adhesion # Organism: Campylobacter jejuni # 2 331 17 318 358 144 38.0 2e-34 MLLSQNLAALPAGGKFIHGSGNISKNNGTMTITGNNKNHVIAWGGGFNINNGETVNFKGS GKAFLNLDYSNKASKILGTLNGNGNNIYLVNPSGVLIGEGGKVNNVSRFVASTSSLDKAL NQFVNAAKQNGDQNAVNFSPVFTRGSLKGNVINMGTINANNIMLVGNEVRNLTSNGTKDV QGKYNNGSGANSLHIIGNKIFLDVEGVQNKKNIRLTGTNDVLGSTPKITVQMAMSTFKTN GHNDWITKDYSIDGSQFGNGSYYVDRIITIGGTGGWNDFANAWNNNTGQTRSINEFKLIG NLNFSGTDFVSVGKPQGAGFNKIFNGNGYTM Prediction of potential genes in microbial genomes Time: Tue May 24 02:47:12 2011 Seq name: gi|197282979|gb|ABQU01000071.1| Helicobacter pullorum MIT 98-5489 cont2.71, whole genome shotgun sequence Length of sequence - 13492 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 8, operones - 4 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 146 79 ## gi|242310438|ref|ZP_04809593.1| filamentous hemagglutinin domain-containing protein + Term 190 - 240 4.1 2 2 Tu 1 . + CDS 530 - 1870 1409 ## COG1066 Predicted ATP-dependent serine protease + Term 1897 - 1927 2.0 - Term 1790 - 1824 -1.0 3 3 Op 1 . - CDS 1871 - 3094 1086 ## COG0303 Molybdopterin biosynthesis enzyme 4 3 Op 2 . - CDS 3105 - 3680 522 ## COG0807 GTP cyclohydrolase II - Prom 3763 - 3822 7.6 + Prom 3703 - 3762 6.5 5 4 Op 1 8/0.000 + CDS 3795 - 4490 541 ## COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase 6 4 Op 2 . + CDS 4468 - 4737 498 ## COG0298 Hydrogenase maturation factor + Term 4765 - 4803 2.4 7 5 Tu 1 . - CDS 4756 - 6147 1743 ## COG0114 Fumarase - Prom 6183 - 6242 8.4 + Prom 6188 - 6247 7.3 8 6 Tu 1 . + CDS 6359 - 7459 1394 ## COG0840 Methyl-accepting chemotaxis protein + Term 7470 - 7508 7.2 9 7 Op 1 . - CDS 7512 - 8564 1306 ## COG0451 Nucleoside-diphosphate-sugar epimerases 10 7 Op 2 . - CDS 8564 - 9688 1273 ## COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase - Prom 9828 - 9887 9.3 + Prom 9845 - 9904 7.9 11 8 Op 1 20/0.000 + CDS 9937 - 11040 1305 ## COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component 12 8 Op 2 24/0.000 + CDS 11050 - 11949 860 ## COG0559 Branched-chain amino acid ABC-type transport system, permease components 13 8 Op 3 19/0.000 + CDS 11959 - 13158 1068 ## COG4177 ABC-type branched-chain amino acid transport system, permease component 14 8 Op 4 . + CDS 13158 - 13491 354 ## COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Predicted protein(s) >gi|197282979|gb|ABQU01000071.1| GENE 1 3 - 146 79 47 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310438|ref|ZP_04809593.1| ## NR: gi|242310438|ref|ZP_04809593.1| filamentous hemagglutinin domain-containing protein [Helicobacter pullorum MIT 98-5489] # 4 47 930 973 973 67 65.0 4e-10 LNYKREVLELPAEEETSIEINEGREKGRLCIVSDNAKTNNPCMAITY >gi|197282979|gb|ABQU01000071.1| GENE 2 530 - 1870 1409 446 aa, chain + ## HITS:1 COG:jhp0209 KEGG:ns NR:ns ## COG: jhp0209 COG1066 # Protein_GI_number: 15611279 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Helicobacter pylori J99 # 4 446 3 448 448 558 64.0 1e-158 MAKKKAQIFECQHCGFQSTKWLGKCSNCGAWESFLELKEEHITAALLDRNTKVIPITEVK EEEFIRFSSGESELDIVLGGGIVLGGMYLVGGSPGVGKSTLLLKISSNLAKMGKNVLYVS GEESGSQIALRAERLGAMNPNLYLLNAIRLEEIIASIHSKEREYVMLVIDSIQTLYSEKI SSSPGSVSQVREVTFELMRLAKDYGICVFIIGHITKEGSIAGPRILEHMVDCVLYFEGDS SRELRFLRGFKNRFGNTSEVGIFEMKSNGLVGAKEASKIFFSQKTSSPGSALSVVLEGSR ALVLEVQALVSDCAYGMPKRASTGFDTNRLNMILALLERKLEIPLNRYDVFINVTGGIKI LETAADLAIVAAILSSFRNRVLSSQSVFIGEVSLVGDIREVSNVEQRLKEALSLGLDKAI LPKKPTQNLGIKCFEVQEVTKIIDWM >gi|197282979|gb|ABQU01000071.1| GENE 3 1871 - 3094 1086 407 aa, chain - ## HITS:1 COG:Cj1519 KEGG:ns NR:ns ## COG: Cj1519 COG0303 # Protein_GI_number: 15792832 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Campylobacter jejuni # 5 394 3 380 396 236 38.0 7e-62 MKEKISYSQAKEILNSQPIKPCGTTRVFLHDSLDRILAKDIFAPSDMPEFPLSNMDGYAI NSTMLEKSKGIFEILRENPAGNQEILELPPNKPLAIKTFTGAAIPKNADMLIPIENVEKL ENKIKITKISQIGEFIRQKGDNYKQGEKLLACGIQINPNHIGLLASLNQIFVEVYEKPKV GILVSGNEILELGETKPNPNSFYNANGHLLYAKILANGGIPKLYPILKDDESKIRSCLDT ALRECDLVISTGGASVGDYDFIRKISQEWENQIIFRGVQIKPGQHILYAHFNQKPFFALP GFPNSTLVTFELFVKEILIRLSGGRFTQEVLEVILQEDLSKKDPRMEFRICNIRNKQGHF EIDFEGKKDFQSAILNNFCPLDNAKIGLAMLAKDTYKVGEKISVLRL >gi|197282979|gb|ABQU01000071.1| GENE 4 3105 - 3680 522 191 aa, chain - ## HITS:1 COG:HP0802 KEGG:ns NR:ns ## COG: HP0802 COG0807 # Protein_GI_number: 15645421 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase II # Organism: Helicobacter pylori 26695 # 2 191 3 192 192 242 62.0 2e-64 MKIQISNEANLPTRFGDFKIRAFREIKQEYPLEHLVIKTQEMGDNPLIRVHSECLTGDAL GSLKCDCGGELHRALEQIHKEQGMVIYLRQEGRGIGLFNKVNAYALQDEGLDTLQANLKL GFQGDERDYSIVKFIFEYYNLTKIRLLTNNPQKIQYFSQFAQVKREPIIIPCNKHNADYL TVKKQKMGHLL >gi|197282979|gb|ABQU01000071.1| GENE 5 3795 - 4490 541 231 aa, chain + ## HITS:1 COG:jhp0837 KEGG:ns NR:ns ## COG: jhp0837 COG0378 # Protein_GI_number: 15611904 # Func_class: O Posttranslational modification, protein turnover, chaperones; K Transcription # Function: Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase # Organism: Helicobacter pylori J99 # 2 231 11 242 242 273 62.0 2e-73 MDNPTLSKKSIEVGMRILSKNDQEAMKLREFYKDNGLFVVNLMSSPGSGKTTLLENIAKN HLLDFSVVEGDLQTNRDAQRLARYGVNAYQITTGDACHLEALMVKEALDNLQQQGDLRDF LFIENVGNLVCPASYDLGANMNIVLLSTAEGDDKVLKYPTMFMCADAVIISKSDLIEVFE FEVGQVREDLAKLKKEIPLFLVAKNDLESIKKVCEFLKANKEKNYVSSHTF >gi|197282979|gb|ABQU01000071.1| GENE 6 4468 - 4737 498 89 aa, chain + ## HITS:1 COG:jhp0836 KEGG:ns NR:ns ## COG: jhp0836 COG0298 # Protein_GI_number: 15611903 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Helicobacter pylori J99 # 1 80 1 78 78 85 66.0 2e-17 MCLAIPSKVISIDKETNTATLDTLGVSREASLDLMSEEVKVGDYVLLHIGYVMGKIDEEQ AKLSLETYEEIIKAIQEEEQEIQEANKKG >gi|197282979|gb|ABQU01000071.1| GENE 7 4756 - 6147 1743 463 aa, chain - ## HITS:1 COG:Cj1364c KEGG:ns NR:ns ## COG: Cj1364c COG0114 # Protein_GI_number: 15792687 # Func_class: C Energy production and conversion # Function: Fumarase # Organism: Campylobacter jejuni # 1 463 1 463 463 852 91.0 0 MDFRIEHDTMGEVKVPNDKYWGAQTERSFENFKIGIEKMPKVLIYAFANLKKSLAIVNFK LGKLPEDKKSAITQACDEIIAGKFDDNFPLAIWQTGSGTQSNMNLNEVIANRATEILGGD FRKEKLIHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLIPALDELIATFKNKVEEFKSI IKIGRTHLQDATPLTLGQEFSGYLSMLEHSKAQILASLPTLRELAIGGTAVGTGLNAHPK LSEMVSEELSQLIGTKFISSPNKFHALTSHDAINFTHGAMKGLAANLMKIANDIRWLASG PRCGLGELNIPENEPGSSIMPGKVNPTQCEAITMVAVQVMGNDATIGFAASQGNFELNVF KPVIIYNFLQSLDLLADSMHSFNIHCAIGITPNQAKIDHNLHNSLMLVTALNPYIGYENA AKVAKNAHKKGISLKESAKELGLVSEEDFTKYVDPTKMIGPKA >gi|197282979|gb|ABQU01000071.1| GENE 8 6359 - 7459 1394 366 aa, chain + ## HITS:1 COG:Cj0448c KEGG:ns NR:ns ## COG: Cj0448c COG0840 # Protein_GI_number: 15791812 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Campylobacter jejuni # 8 315 9 317 365 171 38.0 3e-42 MFDGKYKAELQKALEENKLLKGEIQRLQERNRELEGQIASFEQTQDSGEDEIAIFKDMTL GLAKSCGVNLKILQDDFAKSVDLLYNAKDFATQNIQNTASTQEILINGLSSMTAKLSDFN NMITQVQNDFTAISSVISLITDISDQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAE RTQKATKEIEMNIQVVQQNFSEVQTSTDEIIKEMEVLGTQNETLEKIQTSATQICQETQQ ILTSTFIGLVKLDHLLFKINGYSAIFNENMEATFVGHHDCRLGKWYDSGSGKQNYSTLPS YPLIEAPHQGVHENIIAGYNVMKNNGGTKGCMGEISKYFKQAEEESDKVVKNLDNLAAEK INSLNS >gi|197282979|gb|ABQU01000071.1| GENE 9 7512 - 8564 1306 350 aa, chain - ## HITS:1 COG:BH3709 KEGG:ns NR:ns ## COG: BH3709 COG0451 # Protein_GI_number: 15616271 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Bacillus halodurans # 1 350 1 335 343 422 58.0 1e-118 MKILVTGTAGFIGSFLALRLLERGDEVIGLDCINDYYDVKIKYGRLKNAGISQEKISYNT LIQSEKYPNYRFINLKLEDRENLFALFKNEKFDKVCNLAAQAGVRYSLVNPYAYIDSNIV GFVNILEACRHHNIKHLAYASSSSVYGLNEGMPFSTSDNVDHPISLYAASKKSNELMAHT YSYLFNLPTTGLRFFTVYGPWGRPDMALFLFTKAILEDKAIDVFNNGEMLRDFTYIDDIV EGVVRVIDNIPTPNPQWNGKNPDPHSSKAPYKIYNIGNNNPVKLMDFIEAIEKEVGKTAQ KNMLPLQPGDVPATYANVNDLVSELNYKPNTSIQTGIKNFVKWYREFFAI >gi|197282979|gb|ABQU01000071.1| GENE 10 8564 - 9688 1273 374 aa, chain - ## HITS:1 COG:jhp0673 KEGG:ns NR:ns ## COG: jhp0673 COG0075 # Protein_GI_number: 15611740 # Func_class: E Amino acid transport and metabolism # Function: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase # Organism: Helicobacter pylori J99 # 1 368 1 369 369 434 57.0 1e-121 MLLFTPGPTPTPEFIRVAMSEPTIHHRTPEFENIFSKTRELLKEMLQMPEVLMLASSGSG AMEACVTSLCAKKLLSINSGKFGERFGKIANAFNIPCVEIKNPWDIPASLDSVLEALKNN PDIDAFCIQACESAGGLRHPYEIIAKAIKEYNPEIMVIVDGITAMGVEKLDVSCIDALIG GSQKAFMLPPGMSIIGLSQKAIQKIEDRNVGFYFNLKTELKNQTKNTTAWTAPTTIIIGL CAFLEKAKEIGFDEIYHDTKARSLACDAALESIGLKIYPTIPALSMTTISDDKSDEIRKI LKKDFNVNAAGGQDHLKGKIFRINHMGIVPINEIAWVVNAVELSLDKLGRRKFNGFANQI FLEQYYKLKNSKVK >gi|197282979|gb|ABQU01000071.1| GENE 11 9937 - 11040 1305 367 aa, chain + ## HITS:1 COG:Cj1019c KEGG:ns NR:ns ## COG: Cj1019c COG0683 # Protein_GI_number: 15792346 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport systems, periplasmic component # Organism: Campylobacter jejuni # 1 367 1 371 371 273 43.0 5e-73 MKKIIFSLALVCGFAFGGEVKIGVVLPASGAVGGFGELGKRGIDLAYKAQNKTKNGDTIK IIFIDNKSDKIESANAMQRLVSSDKVSVVIGPMISTNALAMTKIADDNQTPLISPVATND RVTKGKKFVSRISFADSFQGLIAANLAFKDLGAKKAAILFDNSSDYSIGLTKAFRNQFKK LGGQIVIETNAQAGTKDFKAQLSSIKAANPDVLYLPIYYNEGALIALQAKQLGMAIPTIG GDGLVSNQIFFDVAKEAGEGYMVTDYYSTNSKQTPKGEAFIKEYEATYKEPVSTFSAMLA DAYGIAIAAIEACGAEDRVCINDKIRNVKDYEGISGKFSLQNGESIRSAVINEIQNGKLV YKTTIEP >gi|197282979|gb|ABQU01000071.1| GENE 12 11050 - 11949 860 299 aa, chain + ## HITS:1 COG:Cj1017c KEGG:ns NR:ns ## COG: Cj1017c COG0559 # Protein_GI_number: 15792344 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid ABC-type transport system, permease components # Organism: Campylobacter jejuni # 1 299 1 298 298 307 60.0 2e-83 MDILTFLQQCVNGLSLGSMYALIAIGYTMVYGCLRLINFAHADIIMVGAFLSFFAINSLG LPFYASAIFAVLVCAILGVGIDRVAYLPLRSSPRISMLITAIGVSFFLENLFNVFFGSTP RFFSAPEFFSHTFNLGSINLTYITIIVPIVTLLLLVVLLQFLYRTKQGMAIRATAFDINT VRLMGINVNNIIGLVFVIGSTLAGIGGIFYAISYPTIDPLMGVLIGLKAFAAAVLGGIGS VGGAVLGGFILGFTEVMAVAIFPELGGYKDAFAFLFLILVLLFRPVGIMGDWRLEKSRF >gi|197282979|gb|ABQU01000071.1| GENE 13 11959 - 13158 1068 399 aa, chain + ## HITS:1 COG:Cj1016c KEGG:ns NR:ns ## COG: Cj1016c COG4177 # Protein_GI_number: 15792343 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport system, permease component # Organism: Campylobacter jejuni # 40 393 29 347 350 332 58.0 9e-91 MNKIQKLYTSNPTSITLSGHLLLYIGVIIVLFLAQCFLNDYALRIFNNILIFVILAVSYN LINGVTGQLSLEPNGFVAIGAYITALMLLDEDLKLGMFELAEPHPFVLSMYSELLPALLC SGVVAALIAILLAFPVFRVRGDYLAIVTLGFGFIIKILAINNPQWTNGAIGLNEIPNNAD SVVGGIQNFLKGLLDSQSLPEFLKNPLNFVYTHSFENGANITVLFWSGIIATAAVILILQ IVYSKYGRAMKAVRDDEDAAIAMGINTFKIKTFAFSTSAFLEGVGGGLMAVLLTTIDPKI FGFELTFQLLIIIVLGGLGSTTGAIVGTILVIGGGEWLRFLDQPLVFFGQDFGAYPGLRM VFFSLILLVIMLFAREGIMGKKELWDLKPRFFRIFGRRA >gi|197282979|gb|ABQU01000071.1| GENE 14 13158 - 13491 354 111 aa, chain + ## HITS:1 COG:Cj1015c KEGG:ns NR:ns ## COG: Cj1015c COG0411 # Protein_GI_number: 15792342 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport systems, ATPase component # Organism: Campylobacter jejuni # 3 109 2 108 256 145 67.0 2e-35 MALLELENVSIAFGGLKAIDNVSFSIEEGTIFGLIGPNGAGKTTMFNIITANYKPTSGKV TFCGKDISRFKPNVIVNLGIARTFQNIRLFSSMSVLENVLIGLHNDAKYTF Prediction of potential genes in microbial genomes Time: Tue May 24 02:47:30 2011 Seq name: gi|197282978|gb|ABQU01000072.1| Helicobacter pullorum MIT 98-5489 cont2.72, whole genome shotgun sequence Length of sequence - 42907 bp Number of predicted genes - 45, with homology - 42 Number of transcription units - 24, operones - 8 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 18/0.000 + CDS 6 - 437 179 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 2 1 Op 2 . + CDS 400 - 1119 240 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 3 1 Op 3 . + CDS 1189 - 2613 1943 ## COG2704 Anaerobic C4-dicarboxylate transporter + Term 2616 - 2651 3.1 + Prom 2671 - 2730 9.3 4 2 Op 1 59/0.000 + CDS 2765 - 3184 731 ## PROTEIN SUPPORTED gi|239524227|gb|EEQ64093.1| 50S ribosomal protein L13 5 2 Op 2 . + CDS 3194 - 3583 649 ## PROTEIN SUPPORTED gi|239524228|gb|EEQ64094.1| 30S ribosomal protein S9 6 2 Op 3 1/0.143 + CDS 3537 - 4316 426 ## COG1287 Uncharacterized membrane protein, required for N-linked glycosylation 7 2 Op 4 . + CDS 4391 - 5617 731 ## COG1287 Uncharacterized membrane protein, required for N-linked glycosylation 8 2 Op 5 . + CDS 5619 - 7454 1436 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) + Prom 7502 - 7561 6.4 9 3 Tu 1 . + CDS 7581 - 7997 640 ## WS0834 hypothetical protein + Term 7999 - 8033 0.1 - Term 8116 - 8151 2.4 10 4 Tu 1 . - CDS 8158 - 10164 2069 ## COG0840 Methyl-accepting chemotaxis protein - Prom 10278 - 10337 6.3 + Prom 10154 - 10213 6.5 11 5 Tu 1 . + CDS 10308 - 11342 733 ## COG1275 Tellurite resistance protein and related permeases 12 6 Op 1 . - CDS 11344 - 13191 1479 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase 13 6 Op 2 . - CDS 13194 - 13421 235 ## gi|242309194|ref|ZP_04808349.1| predicted protein 14 6 Op 3 . - CDS 13421 - 13654 421 ## gi|242309195|ref|ZP_04808350.1| predicted protein - Prom 13702 - 13761 9.2 15 7 Op 1 . + CDS 14040 - 14357 529 ## HH1517 cytochrome c553 16 7 Op 2 . + CDS 14388 - 15467 954 ## COG0787 Alanine racemase 17 7 Op 3 2/0.000 + CDS 15546 - 16583 844 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 18 7 Op 4 3/0.000 + CDS 16583 - 17305 480 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 19 7 Op 5 2/0.000 + CDS 17362 - 18831 1108 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase 20 7 Op 6 . + CDS 18812 - 19327 339 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases + Term 19373 - 19421 7.1 21 8 Tu 1 . - CDS 19428 - 20483 883 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 20565 - 20624 8.4 22 9 Tu 1 . - CDS 20896 - 21699 650 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 21848 - 21907 7.7 23 10 Op 1 . - CDS 22311 - 22898 491 ## COG2518 Protein-L-isoaspartate carboxylmethyltransferase 24 10 Op 2 . - CDS 22937 - 23659 500 ## COG0388 Predicted amidohydrolase 25 10 Op 3 . - CDS 23649 - 24674 1027 ## COG0208 Ribonucleotide reductase, beta subunit - Prom 24858 - 24917 8.2 + Prom 24838 - 24897 8.9 26 11 Op 1 . + CDS 24927 - 27059 1837 ## COG2217 Cation transport ATPase 27 11 Op 2 3/0.000 + CDS 27060 - 27956 934 ## COG1261 Flagellar basal body P-ring biosynthesis protein 28 11 Op 3 . + CDS 27953 - 28525 420 ## COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase 29 11 Op 4 . + CDS 28593 - 29492 813 ## CCV52592_0630 hypothetical protein 30 12 Op 1 5/0.000 + CDS 29965 - 32073 1624 ## COG3513 Uncharacterized protein conserved in bacteria 31 12 Op 2 4/0.000 + CDS 32093 - 33046 997 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair 32 12 Op 3 . + CDS 33068 - 33499 482 ## COG3512 Uncharacterized protein conserved in bacteria + Term 33661 - 33702 3.2 + Prom 33521 - 33580 7.2 33 13 Tu 1 . + CDS 33750 - 33881 74 ## gi|242309217|ref|ZP_04808372.1| predicted protein + Term 33924 - 33961 -0.7 34 14 Tu 1 . - CDS 33938 - 34084 144 ## - Prom 34212 - 34271 7.4 + Prom 34237 - 34296 2.8 35 15 Tu 1 . + CDS 34341 - 34532 162 ## gi|242309218|ref|ZP_04808373.1| predicted protein - Term 34828 - 34866 0.5 36 16 Tu 1 . - CDS 34877 - 35020 187 ## - Prom 35045 - 35104 5.1 37 17 Tu 1 . - CDS 35123 - 35350 184 ## - Prom 35417 - 35476 6.6 + Prom 35371 - 35430 7.5 38 18 Tu 1 . + CDS 35630 - 36154 549 ## COG0350 Methylated DNA-protein cysteine methyltransferase + Prom 36261 - 36320 9.2 39 19 Tu 1 . + CDS 36537 - 38327 1489 ## COG0591 Na+/proline symporter 40 20 Tu 1 . - CDS 38381 - 39013 529 ## COG2910 Putative NADH-flavin reductase - Prom 39160 - 39219 6.4 + Prom 39053 - 39112 8.6 41 21 Tu 1 . + CDS 39239 - 39580 408 ## COG1733 Predicted transcriptional regulators + Term 39741 - 39783 -0.5 - Term 39456 - 39482 -0.6 42 22 Tu 1 . - CDS 39604 - 40452 851 ## COG2301 Citrate lyase beta subunit - Prom 40499 - 40558 9.4 43 23 Tu 1 . - CDS 40617 - 42083 1558 ## COG0029 Aspartate oxidase 44 24 Op 1 . + CDS 42185 - 42631 377 ## Abu_0923 hypothetical protein 45 24 Op 2 . + CDS 42628 - 42907 276 ## COG0322 Nuclease subunit of the excinuclease complex Predicted protein(s) >gi|197282978|gb|ABQU01000072.1| GENE 1 6 - 437 179 143 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 17 130 119 231 245 73 33 2e-12 MFRVGRYFKEEKRIKNRAIELLEYLGMGDKINLPANSLSYGNSRKVEIARALATNPKLLL LDEPAAGMNPKETEELCELILKMKKDFNLSVLLIEHDMPFVNRLCSEVLVLDYGKKLFNG TPQDAINNKEVIAAYLGDYYATN >gi|197282978|gb|ABQU01000072.1| GENE 2 400 - 1119 240 239 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 9 231 1 231 245 97 29 2e-19 MLRIWGIIMLQIENLEVYYGLIAGLKGISFHIEEHEIITLIGSNGAGKTSTLNGIVHSVK TKGKIYFFGADISHIPTHKIIQRGIALVPEGRHVFTNLSVDENLRMGAYNNDENFLAMKE KMYHLFPRLKERYKQMAGTMSGGEQQMLAIARALMSEPKLLMLDEPSLGLAPKVVGELFE IIARLREEGITILLVEQNAFAALKVANRAYVLENGKITMDGDSKEILQNPEIKKMYLGG >gi|197282978|gb|ABQU01000072.1| GENE 3 1189 - 2613 1943 474 aa, chain + ## HITS:1 COG:Cj0671 KEGG:ns NR:ns ## COG: Cj0671 COG2704 # Protein_GI_number: 15792025 # Func_class: R General function prediction only # Function: Anaerobic C4-dicarboxylate transporter # Organism: Campylobacter jejuni # 1 474 1 474 474 762 87.0 0 MDFFINLDEGVQFAIQIVVVLVCLFYGARKGGVALGMLGGIGILMLVFLFHVKPGKPAID VMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTILAPFVTCFLTILCGTGHVV YTIMPIIYDIAIKNNIRPERPMAAASVSSQMGIIASPVSVAVVSLTALLLAADHKLAGFD GYVNLLQITIPSTLFGVLCIGIFSWFRGKDLDKDEQFQEHLKDPEFKKYVYGETKTLLNI KLPTKDWVAMWIFLAAIAIVAILGIFEELRPNWGQIMKNGQPQFDALGNPKMDSLSMVAV IQMFMLLAGSAILIFTQTDAKKIAQNEIFRSGMIALVAVFGISWMADTMFAVHTPMMKEA LGGVVKEHPWTYAVMLLLISKFVNSQAAAIAAFVPLALNIGVEPGIIVAFAAACYGYYIL PTYPSDLATIQFDRSGTTRIGKFVINHSFILPGLIGVFTSCCAGYVLAIIAGYL >gi|197282978|gb|ABQU01000072.1| GENE 4 2765 - 3184 731 139 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239524227|gb|EEQ64093.1| 50S ribosomal protein L13 [Helicobacter pullorum MIT 98-5489] # 1 139 1 139 139 286 100 2e-76 MKITKMAKANEIKREWIVLDAEGKTFGRLITEIATLLRGKHKPCYTPNVDCGDFVVVINA PKVKFSGMKLEDKEYFTHSGYFGSTKSKTLKEMLEKHPEKLYKLAVRGMLPKTKLGRAMI KKLKVYCDANHPHTAQVSK >gi|197282978|gb|ABQU01000072.1| GENE 5 3194 - 3583 649 129 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239524228|gb|EEQ64094.1| 30S ribosomal protein S9 [Helicobacter pullorum MIT 98-5489] # 1 129 1 129 129 254 100 6e-67 MAKIYATGKRKTAIAKVWLAPGSGKLSINGTNLNDWLGGHEAIKMKVMQPLLLTKQEKSV DIVAATMGSGYSAQAEALRHGISKALAAYDINFRAILKPKGLLTRDSRVVERKKYGKRKA RRSPQFSKR >gi|197282978|gb|ABQU01000072.1| GENE 6 3537 - 4316 426 259 aa, chain + ## HITS:1 COG:Cj1126c KEGG:ns NR:ns ## COG: Cj1126c COG1287 # Protein_GI_number: 15792451 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for N-linked glycosylation # Organism: Campylobacter jejuni # 32 248 2 215 713 61 26.0 1e-09 MGKEKQEEAHNSQKDNQFPSTCLDSCFIQKSLKISLFFKPLFLWHFIFICIFCCAYFLFH YWDYLLFLKDSENFFNHFLILTSYDSYFYAKGAKEFLESFNVAVPYLSILVGVFAKIFGL DNVLVWSSVAFSVSFGIVLYGICFFALEYFEILTSKSNQIFAFLGAFLGAFAPHFYQRTG AGYFDTDMLLLSLPLFAIFCLWLYIIKQKFYWLVLFGFLGFLSVNWHNGIQNILLAGFLL YLGYEGLFFVLKGILKLLF >gi|197282978|gb|ABQU01000072.1| GENE 7 4391 - 5617 731 408 aa, chain + ## HITS:1 COG:Cj1126c KEGG:ns NR:ns ## COG: Cj1126c COG1287 # Protein_GI_number: 15792451 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for N-linked glycosylation # Organism: Campylobacter jejuni # 23 321 279 586 713 100 28.0 7e-21 MIKTRKMMIFCFLIACAYAYFFGLFNPLIAQIKAYLFGEIQYSSAYIYASVVDSILETSS HGFETLVQRSGGWLLFALGLIGFLCFGFYFVSKRHNFIYLCIFLFPFLLLGFASLELGVR FSLFLAPILAFGVVLFFAGILDIMRRFLKTSMVVFAGYVALFLATLEYSIPKPILTNQEI RSLQSFCFLKDDIVFSWWDYGYALEYFTKAEVLLDGGLHSGSINYPIAEILMNKSPILAR NFSLILAQKMQNTPKNQWKLLFEQIIQENKSNPNIFLDSLQKKDYNIGNLPKGEVYWVLP KRIMPLVANIHSFRNINLQNGKRLRESVFVYGDMPLKSAEEYFVFSDFYIKRSQDGIPLV KVFWEGREIVMDFEYLKSNLVQWLIFRNNPAMNLVFENDFVVVYQVRK >gi|197282978|gb|ABQU01000072.1| GENE 8 5619 - 7454 1436 611 aa, chain + ## HITS:1 COG:mlr6755 KEGG:ns NR:ns ## COG: mlr6755 COG0367 # Protein_GI_number: 13475635 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Mesorhizobium loti # 1 600 1 642 665 280 32.0 5e-75 MCGIAGSLNLPKIPLEQVYSLMRHRGPDAKGALEEKTSGGVLQLFHARLSIQDLSADSNQ PMDLEHLSIVFNGEIYNHLQLRNKLPYSFKTHSDTETLLALYLHYGVEFLDKLDGMFAFV IFDRKQQRLFLARDRMGKKPLFCYQKQDVFCFASELNTLLGMQRLDLDLDCIGFFLQSGF FYKDGTPYKNVFSLPNAHYGIYDLQKHTLEMKAYFSLKEQYKKPKINNTKEALENCEILL KESIKNRLLSSDLEVGAFLSGGIDSSLIVALASEIKPNLRTFTIAFEGAYDESFLAEMTA KKYHTNHTTLRITTDLKNDIFKILQNYGRPFADSSAIPSYYVSKEAKKHLSVILNGDGAD ELFGGYRRYVGHLLMPKIKNLAFLAGILPIPKEKKSLYNYLYRLLQMAQNYQKDPSKYYL SATTDIFEGYFCFETSYNKLFEEDLKRVFEDSLTPLSQMLFLDSENLLLSDLLPKMDIAT MANSLEGRSPFLSKMLVEFAPTLADSLKIKGKETKYLLRLLAKKYLAKEVYDAPKRGFEV PLKKWVNGELKEIILQTLQKPKIVDRFLNTKDIQRICFDKGIPEEKQAKMLWSLFVLEVW HKKYQEDCHKN >gi|197282978|gb|ABQU01000072.1| GENE 9 7581 - 7997 640 138 aa, chain + ## HITS:1 COG:no KEGG:WS0834 NR:ns ## KEGG: WS0834 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 138 1 138 138 154 56.0 1e-36 MKKILFAVDDTKSCQKAAEFVVNFFGDREDCAITIIHVKTPIMLYGEAALAAYEDIEKKE SEESDRLLEDFSAIFTNKGVNVKQQLLEGEAVAEVLNYAKDYDLLVIGQSEESFWNKIFS TNQNDFSQKSPIPILIVK >gi|197282978|gb|ABQU01000072.1| GENE 10 8158 - 10164 2069 668 aa, chain - ## HITS:1 COG:Cj1506c KEGG:ns NR:ns ## COG: Cj1506c COG0840 # Protein_GI_number: 15792820 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Campylobacter jejuni # 178 668 207 700 700 310 39.0 6e-84 MFSFLQRLDDFSLKIKIIFASFAAAVIGLSIIVFLVGNQNFNYAKETTTKYAQATLKTYA RSIESQINLGFDSSLNLALLAQENLNNLSFLQKFLQDNIQKNPYYKSAFVWLGNNQTLIA SQDNENLQFKANEIYPLFTDSKSPILFIPKQTPKPKDSTDKTPIYAPIYILTPISYNNQI LGFSGISFDLEKLGSSIKQVKILESGFIVLLSHQSMILHHKFFHVFGRPMANVDKGAAQR LQEALKGKEIIFDRISPNTNAPITTIMEPLTLKNGTYWAVFANIPLDEMLQTAKENRNFA AIVSLLVLLFICAVMFGVSHIIYQRINTIKCGLQDFFDYLNNKKDNFRNIALTNKDELGI MGAMINSNAQNIKLGLEQDQNTIHDFMQTSTEIKQGNLTKRVNQTPNNPRLLELKEVFNS MLDSLQQSIGSNLTNIAKVHQSFSSLDFTKRIQNPTGEVEIITNNLGEEVSKMLNFSFQC SKTLQIKSNDLKNLLNTLAQKSNTQTDALQNSVITITEIAQNMQESNEMIHEVTKQSEEI KNILKIIQDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTSKSLNEIESYT NTLVQSINEAGNIINLQAQSMENITHSIQEVEIITQENNQITNDVSLISQDVAHLADDIL EDVNKKKY >gi|197282978|gb|ABQU01000072.1| GENE 11 10308 - 11342 733 344 aa, chain + ## HITS:1 COG:PAB2393 KEGG:ns NR:ns ## COG: PAB2393 COG1275 # Protein_GI_number: 14521012 # Func_class: P Inorganic ion transport and metabolism # Function: Tellurite resistance protein and related permeases # Organism: Pyrococcus abyssi # 14 337 3 333 339 90 25.0 4e-18 MEEKEVIKLENDFWLIHFPIMFFASVMGVGGFSLVVNKSMKIFALQESLGWIFVFCVGVS VCLFVLIAGLYLLKIFKYPQAFLKEIKHPVRINFFAAVSVSILIVLMLLLPFVPLWLVLT MFVVGAILQIIFSLYVVQYWFINEMKQKMASPAWFIPIVGNLIVPLAGMNINEFAGQMLI GHEILVFYFGMGSFFWILLSASLFFRLVFGENLPQKFLPTLFIFIAPPSIFGLDVLMMFK DYVQMISLYIMASVSFSIALFFVFLMIGIAKVFKNLNFALSWWAFTFPMAAFSLCALELY SISGSLFYEVCGIVGGILTACIVVFVGLRTLRAIKNREICVMEE >gi|197282978|gb|ABQU01000072.1| GENE 12 11344 - 13191 1479 615 aa, chain - ## HITS:1 COG:HP0387 KEGG:ns NR:ns ## COG: HP0387 COG1198 # Protein_GI_number: 15645015 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Helicobacter pylori 26695 # 1 615 1 619 619 521 45.0 1e-147 MFYYLVAILKQNSPILTYTSKIKLQIGEIIKVPLHKSIKTAVVLQSCKKPNFECKEIQQE NSYFSKTQINLAEFITSYYCTSRAIAYGIFTPFLQDSNTTKPSSLEFNLPQLNAKQTEAY NFIMERQSSLLFGDTGSGKTEIYIHLLNQTLKQSQNALFLMPEISLTPQMEKRLYSVFGD ILAFWHSKLSPKKRKETLQRIHNGEIRILAGARSALFLPIHHLGLIIIDEEHDDAYKSNS APRYHARDVALYLAKQLHTKIVLGSATPLASTYYKFQQNQSVFRLKGTYYQSQKEFLFCH SANENHPFILESLANNLQNHKQAIVFLPTRANFKHLLCQTCGESIQCPNCSVSMSLHTKD SSLKCHYCHYTSPIPQSCPLCGGQLNSLRIGTQEFANNLTKEFPKANIACFDRDSITTQN KLEKTLESFNNNQIDILVGTQMLSKGHDYHNVSLSVALGLDYILKSSDYRARERALSLMF QLSGRSGRKEHGKVLIQTLQDDFFKAYLKDYELFLKDELHSRKHLYPPFMRLALIKISHK QQEKALQITQEILKILPKNEKIEIVGYGLAPIEKIANKWRYVVLLRSLEAKTLHQTLLPI KDYPCEIDIDPIEFY >gi|197282978|gb|ABQU01000072.1| GENE 13 13194 - 13421 235 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309194|ref|ZP_04808349.1| ## NR: gi|242309194|ref|ZP_04808349.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 75 1 75 75 125 100.0 1e-27 MENIFRVCINGRYYDIPTQNISQNTLENLKKLTDENHTIDPRKLLGAFLEASEISNTFQT NIQTALQTLETLKNI >gi|197282978|gb|ABQU01000072.1| GENE 14 13421 - 13654 421 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309195|ref|ZP_04808350.1| ## NR: gi|242309195|ref|ZP_04808350.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 77 1 77 77 80 100.0 3e-14 MEEAQNISNRLLNGVNELVEELQKLRDENQQLRQQIVLLKAENEAKNSEISSLYDEISAK EKELENVLNKIQNVLGR >gi|197282978|gb|ABQU01000072.1| GENE 15 14040 - 14357 529 105 aa, chain + ## HITS:1 COG:no KEGG:HH1517 NR:ns ## KEGG: HH1517 # Name: not_defined # Def: cytochrome c553 # Organism: H.hepaticus # Pathway: not_defined # 2 104 1 101 101 97 58.0 1e-19 MMKKVLLGLMLASGCLMAADGATLYKKCIACHGVNGERVAPGSKGNVTIGGMDKARIIEQ LQGYKAGTADNGGAKAIMYANMKNFKFTDADIEAVSDYISKLPKK >gi|197282978|gb|ABQU01000072.1| GENE 16 14388 - 15467 954 359 aa, chain + ## HITS:1 COG:Cj0905c KEGG:ns NR:ns ## COG: Cj0905c COG0787 # Protein_GI_number: 15792235 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Campylobacter jejuni # 1 358 1 328 328 162 33.0 8e-40 MPYLQINPHYFIDNLQVIKSIIGEDEGHKIAIVLKDNAYGHGLVELAKISSEAGITSCFV KNTQEAIEVAKWFEHISILYPQSLESETLLKSCIQRENIYFCVANIESLDLYPPKSKIEL KINSGMNRNGIQINKLQEALKKSLENKLEIVGVFSHNGFGDNIGSEFYAQNDSNLHIKRE VLQFCKANSLKKPRFHFLSSSGALRAAKYNVSLPIELQDDLYRIGIALYGYLCQDSMLYE VQLKPIASLWAKKISTQLLKKGSRIGYGGISKVDEDMLVSTYDIGYGDGLFRVREGMELF TKEGLKIFPRASMDCISIQGDCEEVCIFDDVRPWAEAFGTIPYEILSHLHSYIPKKILQ >gi|197282978|gb|ABQU01000072.1| GENE 17 15546 - 16583 844 345 aa, chain + ## HITS:1 COG:jhp0675 KEGG:ns NR:ns ## COG: jhp0675 COG1181 # Protein_GI_number: 15611742 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Helicobacter pylori J99 # 1 340 1 344 347 342 53.0 6e-94 MNLCVLFGGSSYEHEISIVSAITLKKLLPSIETFVFLDGNHNFYLIPKDKMQSKFFSSKE YLKEMKIYLKVGGFYHKTLLGEKKLPMPMVLNLIHGGDGENGVIASLLDFYGIAYIGPRN PACVLSFDKELTKLLAKNRGILSLDYQVLYKGAQKEIKFPFPVIIKPARLGSSIGIFIAN NQKELDYGLEEAFEYDNKAIVEPFISGIKEYNLAGYKSAQGIKFSFVEEPQKKEFLDFEK KYLDFSRTQNAKEADIPEALQKTLQDNFIKIYENLFEGALIRCDFFVKDDLCYLNEINPI PGSMANYLFDDFKGALEELSKNLPKSNEIRISYELLHKIQFAKGK >gi|197282978|gb|ABQU01000072.1| GENE 18 16583 - 17305 480 240 aa, chain + ## HITS:1 COG:jhp0676 KEGG:ns NR:ns ## COG: jhp0676 COG0596 # Protein_GI_number: 15611743 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Helicobacter pylori J99 # 1 237 1 232 241 225 48.0 5e-59 MAQKTIIYKDCPIDISYEILNFNAPRTLVILHGWGSNKRLMKQAFGESFGDFCHLYIDMP GFGNSSNPTFSMDTFDYAKILEIFLLSLEIQEFVVMGHSFGGKVATLLNPRELILLSSAG ILEEKSLKVKSKIFCSKILNKISPSLAKIFKGILRSQDVQNMNEVMYQTFKKVVNEDFSA IFADFKGRAFIFWGKEDRATSLQSGQKIHHLMRDSRFFALEGDHYFFLKQAKKIEELYLL >gi|197282978|gb|ABQU01000072.1| GENE 19 17362 - 18831 1108 489 aa, chain + ## HITS:1 COG:jhp0677 KEGG:ns NR:ns ## COG: jhp0677 COG0770 # Protein_GI_number: 15611744 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Helicobacter pylori J99 # 1 489 1 493 493 429 50.0 1e-120 MQNIDILIIISRWIFLIALGYYVIVNFQWYHYKLSRVLLKHHKWKWHIFYFVLPVVYFIF IPENIYFYMGIYLYVIALIIWGFKLSKRLVFTGRILRFFALYFIFILFNEVLLFGEDISW SVRIVYLLPLFISIFLSSLIEKILLNRYKKLAYETLKNMPNLTIIAVTGSYGKTSLKNFL IQVLQDDFKVYATPRSINTLTGIIADINQNLSPLTDIYIVEAGARGVGDIKEIVELIKPQ IAVVGKIGPAHIEYFKTMENIYQVKYEILQSDRLERAYIYKENTKPEAFNIEFQGKVICF PQNISEINADLEGTSFVLTENGEKIQLETKVLGAFNVINISAAIAVAKDLGVSKNQIIKQ VQKLERVNHRLSKIVVNDKIILDDSYNGNLEGMLEAIRLASLHTGRKVIVTPGLVESSKE ANVDLARAIDKVFDIAIITGELNSKILKEFIYRPQKIILKDKANMESVLKSATQAGDLIL FANDAPSYI >gi|197282978|gb|ABQU01000072.1| GENE 20 18812 - 19327 339 171 aa, chain + ## HITS:1 COG:HP0741 KEGG:ns NR:ns ## COG: HP0741 COG0537 # Protein_GI_number: 15645361 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Helicobacter pylori 26695 # 11 166 1 155 161 191 50.0 5e-49 MHQAIFDEGRMEHLYAPWRSGYFQEKQKDECIFCDISKNAHLDTQNRVFYRDDKIFCVMN KFPYTPGHFLIIPHLHTHSPELLDEDLWLHLQSFARKGVSLLKGFGAKGVNMGMNIERAG GAGIPEHIHLHLLPRYVGDTNFFTTIGDCRAYGVDFDEIFQTIKKLSFQYF >gi|197282978|gb|ABQU01000072.1| GENE 21 19428 - 20483 883 351 aa, chain - ## HITS:1 COG:ECs0310 KEGG:ns NR:ns ## COG: ECs0310 COG1073 # Protein_GI_number: 15829564 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Escherichia coli O157:H7 # 24 351 37 378 378 363 55.0 1e-100 MKLNVLKSLLIGAFIFLLGGVSMAQANTQGKWDKVFAKSNKVEVQKVSFKNRYGITLVGD LYIPKDIPNNAKLPAIALSGPFGAVKEQASGFYAQTLAEAGFITLAFDPSYTSESAEANP NLPKNIASPEINTDDFSAAVDFLANHTKVDSNKIGILGICGFGGFALNAAAMDTRIKAIV TSSMYDIPRNAARGYFDKQDSTKDRLAIKESLNTQRTKDFKTNTLTKAPSLPEKLKGDEP QFIKEYWDYYKTKRGFHPNSINSNANWSATSSLALINSQILYYSDEILAPVLVIHGEKAH SRYFSEDAFKKLKGENKELLIVKDANHVDLYDNAEKIPFAKISEFFKENLK >gi|197282978|gb|ABQU01000072.1| GENE 22 20896 - 21699 650 267 aa, chain - ## HITS:1 COG:TM1009 KEGG:ns NR:ns ## COG: TM1009 COG0656 # Protein_GI_number: 15643767 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Thermotoga maritima # 4 263 6 269 286 241 45.0 7e-64 MQYVTLNNGLKMPLLGFGTYDIKSIDTFLAAVDCGYRLFDSAQMYGNQKEVGAAIREAIH SRGIKREEFFITTKLSSDMDFESAKKSIESSLKALDIGYIDLLLIHAPYAQAKEMYKAME LAYKEGIIKALGISSFTQKVYLEFIKTCEIMPAINQCETHIYYQQRALLEAMKPYGTILE SWSPFIAGKSGFFSNPTLTQIASAYNKSVAQIALRFLVQQGIIAIPKASKLKHMQENINV FDFSLSAADMESIRALDKNKTQFSWGY >gi|197282978|gb|ABQU01000072.1| GENE 23 22311 - 22898 491 195 aa, chain - ## HITS:1 COG:jhp1017 KEGG:ns NR:ns ## COG: jhp1017 COG2518 # Protein_GI_number: 15612082 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-L-isoaspartate carboxylmethyltransferase # Organism: Helicobacter pylori J99 # 3 194 16 208 209 230 57.0 2e-60 MHKFPISKDVQDALLKINRELFVPEGFVHLAYSLDALPMGASQWISSPLTVAKMTEYLQC NGADSVLEIGCGSGYQAAILSCLIRRVFSIERIEKLLNEARIRIKSCNLNNINTKLDDGQ NGWSTYAPYDRILLSASIKEVPKELFNQLQEGGILVAPLQKNNSQIITRFYKNKGNITKE ELESCVFVQVKDGIT >gi|197282978|gb|ABQU01000072.1| GENE 24 22937 - 23659 500 240 aa, chain - ## HITS:1 COG:aq_103 KEGG:ns NR:ns ## COG: aq_103 COG0388 # Protein_GI_number: 15605691 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Aquifex aeolicus # 5 238 2 242 246 120 31.0 2e-27 MISKQLYTLQFKTKQNFEDNLTYLKNLILECESDSIILAPEVSLTNFCYQRMEEAGEFAK TATETLLKLSGEKTIIITMIEKYKDGFYNNLKVFHNGELLHKQSKHKLFPLGNEHLHFQA GNVEEISPFRIDGIQCGAINCFELRFIELWQKLKGCDLIFVPAQWAKERKDHFQTLTKAL AITTQSFVMASNSKNDSMGGGSAIITPFGYVTQDDSKEIINLKANFNDVAKVRKFIDIGL >gi|197282978|gb|ABQU01000072.1| GENE 25 23649 - 24674 1027 341 aa, chain - ## HITS:1 COG:jhp1016 KEGG:ns NR:ns ## COG: jhp1016 COG0208 # Protein_GI_number: 15612081 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Helicobacter pylori J99 # 2 341 3 341 341 516 75.0 1e-146 MLNRKKIYNPNSNESVNERKIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMT QDKRDYADGLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEE ALHSQSYAVMVESISANTDEIYEMWRTDMQLRSKNDYIAEVYEQLATNPTERNIIKAMFA NQILEGIYFYSGFTFFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMINSTKKESPEF FTKDLEEEVLEMFREAVKVEIAWGEYITQGQILGLTAEIIQEYIKYLADDRLRRVGLPVL YNAKHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGSINFDDF >gi|197282978|gb|ABQU01000072.1| GENE 26 24927 - 27059 1837 710 aa, chain + ## HITS:1 COG:sll1920 KEGG:ns NR:ns ## COG: sll1920 COG2217 # Protein_GI_number: 16329860 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Synechocystis # 2 705 3 743 745 416 32.0 1e-116 MEVAKLNISGMHCSACSSTIEKNLEKIEGIKNIKINAVSGRAKISYEGSCISEQKIIELI TSYGFPAFRDNAKELEIIYLEGLKKRLLVGIPLFVVIFALHMGGFHGIWSSIIQLVLATI VQVYCAYPFYRGAKSVFKTKSADMNVLIALGTSVAYLYSLYLFIIRDSNGYYFEGSSAVI CFVLLGEFLKSKAKKKAGDELESLTKILPPKARILKGENQEWISIDNIKKGDQCLVVGGE KIPLDGKIIKGNAEVSSAHINGEELPKILGVGSEVVGGSLVLNGEIVVESLKDSNEFFVY EMLDLLELSQTQKPPIGKMADKIASIFVPSIVVLSVVAFFFWWMMGEGFAFSLSIAAAIL VVSCPCALGLAVPLAIVCASMRAKKSEILIKTPEVYERAREIKTIVFDKTGTLTKGEISI KNAEFISQDSNLIVSLCYAMQENNPHPIAKAFVEYLKAKKERIVLEEKEYIIAKGVRAKY ANDEYFLGSLEWIETIIDKKITQNRENVIAFSNKSEILALFYLQDSIKEGAREMVESLQN IGIESVILSGDNVESVKKVAQNIGITEYYAGVSPMQKAEIIKQLQAKGGVCFVGDGINDA LALKEASFGISFANATDLAKEVGDILLLRDDLSLVYKVFEISFATLKNIKENLFFAYVYN VVLIPIAAGVLYPAFGIVLQPAFAGGAMAFSSVSVVANALRISRLKLKGE >gi|197282978|gb|ABQU01000072.1| GENE 27 27060 - 27956 934 298 aa, chain + ## HITS:1 COG:HP1477 KEGG:ns NR:ns ## COG: HP1477 COG1261 # Protein_GI_number: 15646086 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones # Function: Flagellar basal body P-ring biosynthesis protein # Organism: Helicobacter pylori 26695 # 94 297 18 217 218 79 29.0 8e-15 MFKKILGFLLIFAVCLNGLEYFILEEEYHFKENKIYAKEIFPQITNDFLVLEIPKNSSNY QIKSSQLITLFEKEGVQVGAKSAVVTFKRGIKGDVEGIKKYIVGLFLQEYKKNNIKIKKI DLEQITPIDFNAQSVREIDFHPKLLKRKEGTFEVVVEDNGRNRKVFFKYNVDATLEGIIT ASEISGGQTITYQNSRIVEIPFDKVGSDLMQQGELGKVAVRSYTPENVLVTKDRLIAKRV VKKGDKIIVSVQEEGVILEFILEALKNAAIGDVIKAKALEGKKTYEVKIIDEGRGELQ >gi|197282978|gb|ABQU01000072.1| GENE 28 27953 - 28525 420 190 aa, chain + ## HITS:1 COG:HP1476 KEGG:ns NR:ns ## COG: HP1476 COG0163 # Protein_GI_number: 15646085 # Func_class: H Coenzyme transport and metabolism # Function: 3-polyprenyl-4-hydroxybenzoate decarboxylase # Organism: Helicobacter pylori 26695 # 3 186 2 184 187 162 47.0 5e-40 MKRVIVGISGASGAGLGLKFLESLPKEIEKYCVISEGAKRVLSSEENIQETQKFEQIKSR VSKVFLFGDDELGACIASGSFVCEAMVVIPCSQNTLAKIACGISDTLITRCASVMIKEQR KLLLAPREIPFSQIALENMLKLSQIGVTIAPPVFGYYAGKNLDEIENMLIGKWCDNLGIP FEYGRWQGCN >gi|197282978|gb|ABQU01000072.1| GENE 29 28593 - 29492 813 299 aa, chain + ## HITS:1 COG:no KEGG:CCV52592_0630 NR:ns ## KEGG: CCV52592_0630 # Name: not_defined # Def: hypothetical protein # Organism: C.curvus # Pathway: not_defined # 28 299 15 318 318 380 64.0 1e-104 MIENRYQNCLPFPLQNNNIDSIYQKSPRHFQDCSHIKLTYVTHFYCDQDNIDSVISLLRE YESYDPNLLDIVMFVIVDDGSPIAYEIPKFNLNLRWIKINENIPWNQSGARNLGVTYAKS DNIVMTDLDHKIYENTLWYMANHKPCGRNFYKIKYVDSNKGHSNTFFMSRARFMRFFGYD EEFSGHYGAEDFRFVKFHKAHGSRQMYLPDKYRVERNRKEINRETSYHSLVRDLTHCTPV DLRKKLENRYFGNEQGHSRIFLNFTWRFLSEQRRNNIPQPKPKKWWYYLWYWRWLVGYK >gi|197282978|gb|ABQU01000072.1| GENE 30 29965 - 32073 1624 702 aa, chain + ## HITS:1 COG:Cj1523c KEGG:ns NR:ns ## COG: Cj1523c COG3513 # Protein_GI_number: 15792836 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 17 684 318 980 984 655 54.0 0 MRKILKIDERIQFKEVDYTAKNPENKKFVEFKNLKKFCEILGAIVGDRALADSIARDMTL IKDEEELAQKLRGYGKFSQEQITQLSALHFSHHISLSLKALSEILPFMREGMRYDEACQE AKLQAKHNDKKSKFLPPFCESIYADELTNPVVHRAIAEYRKILNALIAKYGSVHKIHIEL TRDVGKNFQEREKYKKEIESNYKARVQAMQECEKLGLTLSEGNILKLRLFREQNEICVYS GRKITLANLKEQGALEIDHILPYSRSSDDSYMNKVLVFTNENQNKGNKTPYEAFGGDSQK WGEIESLALRSGYPKKKAKRILDKGFGDREAGFKSRNIVDSGYIARLIANYTKEYLKFLP LDSHENTALIAGEKDSKIHVEAVKGMLTATMRHFWGLGSKNRYEHTHHAVDAIIIAYINA AMIQRFSQFRQNQESLKARFYAKELAKEEFKTQRAFFEPFSGFREQVLAKVGQIFVSRPP RKRARGALHEETFYSIDDKKLSETYGGKKGVQRALSLGKIRQIGTKIVANGPMVRVDIFK HTQSGRFYAVPIYTMDFALGILPNKAVVSGKDKDRIIKDWLEMDSCYEFCFSLFKDDVIE VQKRDMEKPELAYFVSLDASDGRIKVRHHCNDITKINENQKKLFSEAIEKEVVGRGSIQN LKVFKKYKVSPLGEIKEAKYEPRQPIALKTSPKKHRKQNNAQ >gi|197282978|gb|ABQU01000072.1| GENE 31 32093 - 33046 997 317 aa, chain + ## HITS:1 COG:Cj1522c KEGG:ns NR:ns ## COG: Cj1522c COG1518 # Protein_GI_number: 15792835 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Campylobacter jejuni # 1 314 1 292 296 322 53.0 7e-88 MGYDEAFKNVIISSRAKLSLQDNHLVIAGNDEVAKLYIKDLHCVVLESPQITITQALLSA LAESKVLVLTCDRTHAINGVFTPFLGHFANAQVAREQIAVSTESKAKLWQQIVQNKIANQ ASVLQSCGYITEAVELARMCEKVEADDASNVEAKAAALYFKTLFGIGFSRKAKHKIHNAL LDYGYVIVRSCVIRSVCMSGLLTWSGIKHSNQFNQFNLCDDIIEVFRPFVDRCVLGLLES RGKDGDYAVVCDLSELDSKSYLETMTKEDKRALIENLQSEAKVGEQSFPLSRAINHYVQR FKNALLYGQPLVVVCME >gi|197282978|gb|ABQU01000072.1| GENE 32 33068 - 33499 482 143 aa, chain + ## HITS:1 COG:Cj1521c KEGG:ns NR:ns ## COG: Cj1521c COG3512 # Protein_GI_number: 15792834 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 1 143 7 143 143 149 58.0 1e-36 MRVLVMFDLPTKTKKDRQTGTKFRNNLIKLGFFMMQFSVYMRICKGSASAKASINNVRKF VPPRGSIRCLIITEKQFDSMEILLGGVGFNEMMNEPRNLVLFGFDEKKGEYVYADNDKDS DEEKLLQTKSKKTRNIQGSLFEF >gi|197282978|gb|ABQU01000072.1| GENE 33 33750 - 33881 74 43 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309217|ref|ZP_04808372.1| ## NR: gi|242309217|ref|ZP_04808372.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 43 1 43 43 71 100.0 2e-11 MVYFSIERFKKGLKPNQHLTMQEIDFSIERFKKGLKPWHFKHF >gi|197282978|gb|ABQU01000072.1| GENE 34 33938 - 34084 144 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFGTRRIFRSFSPFLNLSMLKSEPEGYSEVTGFSPFLNLSMLKYERRY >gi|197282978|gb|ABQU01000072.1| GENE 35 34341 - 34532 162 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309218|ref|ZP_04808373.1| ## NR: gi|242309218|ref|ZP_04808373.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 63 3 65 65 81 100.0 2e-14 MFLHFSIERFKKGLKQNYEAQKEFAHFSIERFKKGLKPFSHWFKKFYHFSIERFKKGLKR NSI >gi|197282978|gb|ABQU01000072.1| GENE 36 34877 - 35020 187 47 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLKSEPEGYSEVTGFSPFLNLSMLKFLDVRMIDQESFSPFLNLSMLK >gi|197282978|gb|ABQU01000072.1| GENE 37 35123 - 35350 184 75 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLKSSKPKGRSFPSFSLFINLSMLKSSENVSRTRARFSPFLNLSMLKFGICLKMQRVSFS PFLNLSMLKCITKWI >gi|197282978|gb|ABQU01000072.1| GENE 38 35630 - 36154 549 174 aa, chain + ## HITS:1 COG:L118481 KEGG:ns NR:ns ## COG: L118481 COG0350 # Protein_GI_number: 15672513 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Lactococcus lactis # 1 168 1 168 169 151 48.0 6e-37 MVYTTFYQSPIGTILLASKDNKLIGSWIEGQKYYLGNLKESTQEKGDEPILLQTKIWLDR YFNGEQPHTFELDLAPNGSVFATNVWNILCQIPYGEVITYGDIAKKVAQIAHKDTMSAQA VGGAVGHNPISIIIPCHRVVGTNGSMTGYAGGIEKKIQLLQHEGVNLKSLQIKR >gi|197282978|gb|ABQU01000072.1| GENE 39 36537 - 38327 1489 596 aa, chain + ## HITS:1 COG:Cj1502c KEGG:ns NR:ns ## COG: Cj1502c COG0591 # Protein_GI_number: 15792816 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Campylobacter jejuni # 336 596 236 495 495 380 80.0 1e-105 MEVVSINIPIAVMFITYSALMLFIGFYFYRQNKSTEDYFLGGRSMGPVVSALSAGASDMS GWLLMGLPGALYVSGFVDSYIAIGLTIGASLNWIFVAKRLRIYTSVVSNSLTIPDYFETR FSDDKHILRVVCAAVILIFFTFYVSSGLVSGAKLFEEVFGIRYDYALTTGTFIIVAYTFL GGYKAVCWTDMIQGLLMILALVVVPIVMFLQLGSFKEVASYIAHSDESSKKIIQIQNDIP NILKNIKSVETQAKIQVLIESLNQTQDRSISSAKLDEKLKTDSQIQAFFNNDLSTAIFSR DFAKRLSEALEANDFARLENLLAAWQHIPFVAKDRLSWLSGVSLVGIISALAWGLGYFGQ PHILVRFMSIRSTKDIPAATFIGIAWMAICLIAACFIGMLGVAYVNKFNLSLQDPERIFI VMSQLLFNPWIAGILLSAILAAIMSTASSQLLVSSSTIAEDFYKKIFKQEASEAMVLRLG KVGVLVVALIAFVISTDKNSSVLSIVAYAWAGFGASFGSVMLFSLFWSRMTRIGAIAGMI SGAVVVVAWKQLFADTGVYEIIPGFVVASLAIIIFSLASKVRDGTKAAYDKMLKNL >gi|197282978|gb|ABQU01000072.1| GENE 40 38381 - 39013 529 210 aa, chain - ## HITS:1 COG:Cj1555c KEGG:ns NR:ns ## COG: Cj1555c COG2910 # Protein_GI_number: 15792862 # Func_class: R General function prediction only # Function: Putative NADH-flavin reductase # Organism: Campylobacter jejuni # 1 210 1 211 211 243 59.0 2e-64 MKIAVLCANGKAGKLIVEEAINKGLEVSAFVRDSSKARFDSKVCVVQKDIFTLESSDLQG FDVIIDAFGEWQNLSLHKAHMEHLVQILSGNSAKFLVVGGAGSLYMDTSHTTMLMDTPDF PKEYLPVARATTEAFDVIKASKGINWVYVSPPAVFIPDAPKSGKYKIIGEEFELNSKGES RVSYADYAIAMIEIALDSTYSKQRVGVIGL >gi|197282978|gb|ABQU01000072.1| GENE 41 39239 - 39580 408 113 aa, chain + ## HITS:1 COG:Cj1556 KEGG:ns NR:ns ## COG: Cj1556 COG1733 # Protein_GI_number: 15792863 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Campylobacter jejuni # 1 108 1 108 110 158 79.0 3e-39 MTKYHSPCPIETTLNLIGNKWKFLIIRDLLSGTKRFGELKKSISATKNQTISQAVLTQNL RELEEAKILTRKVYAEVPPRVEYALTPLGESLKEILESLAVWGEKYKNKENLA >gi|197282978|gb|ABQU01000072.1| GENE 42 39604 - 40452 851 282 aa, chain - ## HITS:1 COG:BMEII1074 KEGG:ns NR:ns ## COG: BMEII1074 COG2301 # Protein_GI_number: 17989419 # Func_class: G Carbohydrate transport and metabolism # Function: Citrate lyase beta subunit # Organism: Brucella melitensis # 17 278 11 258 274 117 31.0 2e-26 MPHSTLPYDFPRAKSFLFVSASKIENFESAFQSGAEAIIFDLEDSVTPEQKPTGRKNILS FSKANPNKKFFIRINDAQSDFFTEDMAFLNQMGLANLYGIMLPKAEQKAHIEAVLNAVGE IPLILLIESAWGVQNINLTASMPCVKQLAFGAFDMILDLGLQDGEGKDFALNYVRVQIAL ASRIYNLLPPINRVFPNTRDISKLKANMESAYSMGFGGSLTFYPNQIATINAIFAQGEEK IEWAKEILRLAKIHKGEPFNFEGNVIDLSMVKKAQGILGRKY >gi|197282978|gb|ABQU01000072.1| GENE 43 40617 - 42083 1558 488 aa, chain - ## HITS:1 COG:CAC1024 KEGG:ns NR:ns ## COG: CAC1024 COG0029 # Protein_GI_number: 15894311 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate oxidase # Organism: Clostridium acetobutylicum # 1 421 3 400 434 297 40.0 3e-80 MQYDVIIVGAGVAGLYAALNLPKNLKVLILCKDQPWECNTFYAQGGIAVAKDKADIPLHI KDTLKAGAGMCDENAVTTLSQESLEVLEDLIAKNTPFDRDESGNLLFTKEAAHSTSRIIH AGGDCTGRVIHSHLISQITHTLWKNATVTELLIDDDHCCGVSVLTKRGNYNLYAKNVILA SGGVGALFEYHTNAYTISSELHGMILENGLKLKDMEMLQFHPTVFVKTPHARKMLLSEAL RGEGAYIVDFWGKRFLFDYDDKGELAPRDKVARSIFDYKLKLQKQYPNAKSEELEVYLDL SNFSKDFFYQRFPNIARNLNLVGYEVPNNKIPISPAFHYCMGGIETNKDGKVLGMQNLYA VGECACTGVHGANRLASNSLLEGLVFSRRATQDILNKNFDFKAREFPLHTQPLHKEQDEN LKALLRNLMWNKVGIIRKKSGLNEALGGVEVMLQSGIGRLLKLRLLTAKNIIQSALKREE SIGAHFIQ >gi|197282978|gb|ABQU01000072.1| GENE 44 42185 - 42631 377 148 aa, chain + ## HITS:1 COG:no KEGG:Abu_0923 NR:ns ## KEGG: Abu_0923 # Name: not_defined # Def: hypothetical protein # Organism: A.butzleri # Pathway: not_defined # 1 146 1 138 138 84 41.0 1e-15 MKKVSEVLSHLFSDPCYEKIYLNQQIQHFITMLPLSVRNGIKFFYFKNHTLFFVLKHPCF KQEFDYKLTIIKQLLKQYQKEKEKLLEIQNLKAFVGHNVYEKSLEIAQEIPQYSYGELSS GDFINLAKNQEIYGIFERIKKLIKSNQQ >gi|197282978|gb|ABQU01000072.1| GENE 45 42628 - 42907 276 93 aa, chain + ## HITS:1 COG:Cj1246c KEGG:ns NR:ns ## COG: Cj1246c COG0322 # Protein_GI_number: 15792570 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Campylobacter jejuni # 11 93 4 86 600 95 54.0 2e-20 MTEVKPLPLNETLAATLKKLPNKSGVYHYFDSEGRLLYIGKAKNLKNRIKSYFRFTPSLS VAPNLSARISQMVSQIASMRYIVVENENDALIL Prediction of potential genes in microbial genomes Time: Tue May 24 02:48:21 2011 Seq name: gi|197282977|gb|ABQU01000073.1| Helicobacter pullorum MIT 98-5489 cont2.73, whole genome shotgun sequence Length of sequence - 22050 bp Number of predicted genes - 23, with homology - 23 Number of transcription units - 8, operones - 6 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1558 1280 ## COG0322 Nuclease subunit of the excinuclease complex + Term 1654 - 1692 5.1 - Term 1641 - 1679 5.9 2 2 Op 1 . - CDS 1693 - 2406 356 ## PROTEIN SUPPORTED gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 3 2 Op 2 . - CDS 2396 - 3814 1179 ## COG0165 Argininosuccinate lyase 4 2 Op 3 . - CDS 3831 - 4262 293 ## COG1981 Predicted membrane protein - Prom 4303 - 4362 10.5 + Prom 4246 - 4305 9.1 5 3 Op 1 17/0.000 + CDS 4410 - 5084 515 ## COG0765 ABC-type amino acid transport system, permease component 6 3 Op 2 34/0.000 + CDS 5084 - 5737 485 ## COG0765 ABC-type amino acid transport system, permease component 7 3 Op 3 16/0.000 + CDS 5752 - 6504 280 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 + Prom 6522 - 6581 7.1 8 3 Op 4 . + CDS 6679 - 7500 928 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 7612 - 7667 2.2 9 4 Op 1 . - CDS 7502 - 8146 445 ## COG0177 Predicted EndoIII-related endonuclease 10 4 Op 2 . - CDS 8158 - 10743 1748 ## WS1062 hypothetical protein - Prom 10778 - 10837 7.8 + Prom 10551 - 10610 4.0 11 5 Tu 1 . + CDS 10676 - 11626 707 ## COG1559 Predicted periplasmic solute-binding protein + Prom 11671 - 11730 15.3 12 6 Op 1 . + CDS 11783 - 12724 1115 ## COG0039 Malate/lactate dehydrogenases + Prom 12726 - 12785 1.7 13 6 Op 2 8/0.000 + CDS 12808 - 13119 416 ## COG1146 Ferredoxin 14 6 Op 3 23/0.000 + CDS 13135 - 14262 1350 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit 15 6 Op 4 22/0.000 + CDS 14264 - 15097 880 ## COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit 16 6 Op 5 . + CDS 15094 - 15660 732 ## COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit + Prom 15770 - 15829 15.4 17 7 Op 1 . + CDS 15935 - 17473 892 ## COG1145 Ferredoxin 18 7 Op 2 . + CDS 17475 - 18077 629 ## WS1144 hypothetical protein + Term 18097 - 18131 1.7 + Prom 18079 - 18138 3.5 19 8 Op 1 . + CDS 18158 - 18352 247 ## WS0732 hypothetical protein 20 8 Op 2 5/0.000 + CDS 18369 - 18923 594 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 21 8 Op 3 16/0.000 + CDS 18972 - 21194 2727 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 22 8 Op 4 . + CDS 21205 - 21834 706 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 23 8 Op 5 . + CDS 21845 - 22049 195 ## HH0226 formate dehydrogenase-N (EC:1.2.1.2) Predicted protein(s) >gi|197282977|gb|ABQU01000073.1| GENE 1 2 - 1558 1280 518 aa, chain + ## HITS:1 COG:HP0821 KEGG:ns NR:ns ## COG: HP0821 COG0322 # Protein_GI_number: 15645440 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Helicobacter pylori 26695 # 1 505 89 594 594 500 52.0 1e-141 LIKQLKPKYNILLRDDKTYPYLCVDISEDYPRILLTRKVFKSQSIHYFGPYSSGGRDLLD SLYETFPLAQKESCLKGKKACLFYQIKRCLAPCEGKISKEDYRKILEQALECIQNPKKIL AILDKKMQFLSENLRFEEAMVLRDRIAKIKQISPLSGVDFARMEDLDIFALEIEGNKGVL VKFFVRGGRVVSSASNVIKSQYELNIEEIYTQSLINYYSGEILIKPKQILIPYDLKEKKD ELEQFLYQKLHKKIPIHCPKSGDKKQLCNLALKNAKESLNLNLTASEEILLDIQKLFGLQ NMPYRIEIFDTSHHRGKQCVGAMVVYDERFIKESYRHYLLEGSDEYLQMKEMLQRRIEKF KEEVPPDLWVLDGGVGQINLAKDLLNSAGVNLEVVGISKEKLDSKAHRAKGAALDILRDE KGQEYRLKSSDKRLQFLQKLRDEAHRFAITFHQKQKQKTMQQSKVLEVKGVGKAIQKRLL AYFGSFEGIKKASLDELEKVLSKKLAKSVYEGLLEVKS >gi|197282977|gb|ABQU01000073.1| GENE 2 1693 - 2406 356 237 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 [Kordia algicida OT-1] # 11 236 1 221 221 141 37 3e-33 MNNKQQKIISMFDEIASSYDLANRVMSCGIDISWRKKACNLAFKNLPKDSLNSLNILDVA CGTGDMISHWQKNANGVKIHKIIGADPSSGMLEVAQKKFPHIHFIQCEATNLPFQNKEFD ILSIAYGIRNVVERKKALEEFARVLKKDGILVILEFTKCENPGILEQFMGFYTKNILPFV GGIISKNYRAYKYLPDSIEEFLTAKKLNLELQESGFEPLYTKSFSANVCTLFVARKI >gi|197282977|gb|ABQU01000073.1| GENE 3 2396 - 3814 1179 472 aa, chain - ## HITS:1 COG:Cj0931c KEGG:ns NR:ns ## COG: Cj0931c COG0165 # Protein_GI_number: 15792260 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Campylobacter jejuni # 1 460 1 458 460 502 57.0 1e-142 MKNKKLWGGRFQENASEILERFNASLPFDKKLYKQDILGSKTHAKMLSHCGILTQEESQK ICEGLEQIQEEIENEKFIFDISDEDIHMAIEKRLIEIIGEVGKKLHTARSRNDQVALDFR LFVLNSNQKIRSLLLTLIQTLLEIAKPHTKTILPGMTHLQHAQPVNFGFLMCAYICMFMR DFERLESSFKRNNYCPLGSAALAGTPYQTDRFYTSKALGFTAPTLNATDSVSDRDFALDF LYDSSLIAMHISRMAEELVLWSSYEFRFITLSDAYSTGSSIMPQKKNPDVPELLRGKSGR VYGNLFSLLTTMKGLPLAYNKDTQEDKEGVFDSFETLEISLRILNDLLKTMQINPKEMQK ACQKGHLTATDLADFLVQNCNIPFREAHHITGKAVAYAESLNKDLSQLSIQELCSVDSKI PQEAHKSLDLMASMNSRNSYGGTSTQATQAQIESLEAWLELAKLSLKRQNEQ >gi|197282977|gb|ABQU01000073.1| GENE 4 3831 - 4262 293 143 aa, chain - ## HITS:1 COG:Cj0362 KEGG:ns NR:ns ## COG: Cj0362 COG1981 # Protein_GI_number: 15791729 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 3 143 9 150 150 139 54.0 1e-33 MVYYYVKIFHIISFVSWMAMLFYLPRLFVYHAEHKDNKGFCEVVKIQEEKLYNFIGYPAI ICTLLSGIWLIALQPSLLTEGGWLHAKILLVIILIAYHFSLFYYLKAFKNDNCHKNGKFF RIYNEVPTIALILISILVILKPF >gi|197282977|gb|ABQU01000073.1| GENE 5 4410 - 5084 515 224 aa, chain + ## HITS:1 COG:jhp1096 KEGG:ns NR:ns ## COG: jhp1096 COG0765 # Protein_GI_number: 15612161 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Helicobacter pylori J99 # 7 223 2 216 217 195 56.0 6e-50 MTSLFFGLDIEFIKNAIPTFIDALWLTLHLSFFGILFSIVLGFCIAVVQFYKLRFLSTLC QAYIELSRNTPLLIQLFFLYYGLPQVGLHLESYTCALIGVVFLGGSYMAESFRAGLESVG KIQLESGRSLGLSEMQLVFYVILPQSLVISLPYIGANVIFLLKETSVVSAIALADILYVT KDLIGSYYKTSETLLLLVLCYLVVLLPLSLFFLFLEKYYKRKIV >gi|197282977|gb|ABQU01000073.1| GENE 6 5084 - 5737 485 217 aa, chain + ## HITS:1 COG:SP0710 KEGG:ns NR:ns ## COG: SP0710 COG0765 # Protein_GI_number: 15900608 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 214 6 221 225 214 54.0 7e-56 MEILFDTQNIVRLLQGVLVTFQIAFIAIFFSCIFGFVLGYLMTLPNKILNFICRFYLETI RIIPILAWLFIVYFGFSSFLNLNGIWACILVFSLWGIAEMGDLVRGAISSLPRHQSESGR ALGLSEMQIQIFIILPQSFRRLLPPLVNLFTRMIKTTSLAALIGVSDMLKVGQQIIEVNL ISYPQASFWVYGGIFALYFMLCYPLSLFSQHLERKLA >gi|197282977|gb|ABQU01000073.1| GENE 7 5752 - 6504 280 250 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 11 224 9 219 309 112 32 2e-24 MSNHIENEVLLEVQEIVKKFGNTLVLDGVSLEIKKGEVCAILGPSGCGKSTFLRCINGLE NINEGKIIFKQKDIHQNKTDWRNIRQKIGMVFQNYELFPHLSVLENIILAPTKVQKRSKD EAISQAIKLLNRVGLEHKKDAYPKELSGGQKQRVAIVRALCMNPEIMLFDEVTASLDPEM VKEVLEVIKELAMQGMTMILVTHEMKFAQKVADKIVFFDKGKIVEIATPQEFFTNPKSQR AKKFLNIFEF >gi|197282977|gb|ABQU01000073.1| GENE 8 6679 - 7500 928 273 aa, chain + ## HITS:1 COG:HP1172 KEGG:ns NR:ns ## COG: HP1172 COG0834 # Protein_GI_number: 15645786 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Helicobacter pylori 26695 # 8 264 12 268 277 323 61.0 3e-88 MRKILFIMFLGILSLWFVGCGQTQTNSNNTLEAIKQKGVVTIGVFSDKPPFGFINKDGKN DGFDVYLSKQIAKDLLGDENKVKFELVEAASRVEFLKSGKVDIIMANFTKTPEREAVVDF AAPYMKVALGVVSKNGEIKTIEDLKGKKLIVNKGTTADFYFSKNHPEIELLKYDQNTESF LALKDGRGVALAHDNLLVFAWAKENPGFEVGITKMGNEDVIAPAVKKGDKELLEWLNQEI QTLTENGFMNKAYQETLAPIYGEDNLKSVLFVK >gi|197282977|gb|ABQU01000073.1| GENE 9 7502 - 8146 445 214 aa, chain - ## HITS:1 COG:Cj0595c KEGG:ns NR:ns ## COG: Cj0595c COG0177 # Protein_GI_number: 15791955 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Campylobacter jejuni # 12 209 6 203 208 268 71.0 5e-72 MPKKATKKEIQEIKSLFLKHYKNAKTELIYKNDYELLIAVMLSAQCTDKRVNLITPALFK QYPNPKALQNAPLDEIKEFIKTCSFFNNKATNLKAMAQVVCEKFNGEIPLDREILKTLPG VGQKTANVVLIESKEANFIAVDTHVFRVSHRLGLSNAKTPLQTEEELTKIFVDNLATLHQ AMVLFGRYTCKALNPQCQECFLSHLCKSKTSYKC >gi|197282977|gb|ABQU01000073.1| GENE 10 8158 - 10743 1748 861 aa, chain - ## HITS:1 COG:no KEGG:WS1062 NR:ns ## KEGG: WS1062 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 25 860 8 836 838 405 31.0 1e-111 MKKPSTKLLKITFFLSFFIGAFILLYTFLYNGIRIHQFQIAGIQFQEFYLRLDKKLILEI QSLNLSNLEYSTSSSNMDIQSQIQYAKNIHLLLQYFQKIQIHQIILDDYNASLNYDGDNF TINLPWLYTKLNLIEKSSQVLITIHDFYLKEMGIYYRGEGKYNLKKQNLEMNGRIDFLDI KDYKILTSLHLQMNGNSENIYLKGSSNTFENINFLRPLLPPFHNKILESWIFDNYTLSSA KINDFSLTIPLKFDNILTESLNSLYVSGEVKNANVTFKENLPPIFSPNVKMIFAKNALEF YPDTPNYQNHILSGSQVSIKNIFTNPSLEIFINTNSPLDDEIETLLESYHITLPIQAPNA KIDTKLHLKVDLQNHSIDYKGIFKSHNADIMVNSIPFYSEYISVNMDNHLINVNTKNSSY KNYLKGDSNFILDTTSKTLSGDLLIHSFLIFSDSTEILSIQNHLLPFKVNFQEHNQTLIE FPTLKLLSTLKDDYYFEFNDLNALLPFSQLLKEYKIQQGYAKITTKDFNEFYGNLSVQST QNILLDKSNNQPLNSFELQLHYNPTHFSIQSQDENFIFRQNEQSKQLTLNNLGILIDLEQ LKTSSKQNTPFIIQGKNSNLHTKKYTILSDSFSLSLINDELKATLTHKNGRADIYKKGDS ITIDAKEFGDLFFNTLIGQNAFSNGRFFLNANTNEKGVLIGKINLLNTSINQLNTLQNLM AFIDTIPSLLSLKMPGFNDQGYYLKEGNIIFGLNQDFLAIENLDFIGSSIDIKGKGIIDI KNQNIDFYAQLITAKSLGEIINKIPLVNYILLGKEGTISTSFSIKGPLKNPNITTQTTQD ILLSPFNILKRIVTSPLEIFN >gi|197282977|gb|ABQU01000073.1| GENE 11 10676 - 11626 707 316 aa, chain + ## HITS:1 COG:Cj0529c KEGG:ns NR:ns ## COG: Cj0529c COG1559 # Protein_GI_number: 15791890 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Campylobacter jejuni # 21 310 33 323 333 300 50.0 3e-81 MNAPIKNDKKKVILSNLVDGFFILLIVLCFYLQTPIHSSRIVYIPQGGTNEIIAYLKKNN FDVNKIDGYLLHFFGYLQSGWLDIGKTNLAKGDFLYALMTSKAALEDIILIPGETLYFFI QEIALKLNLDEEKLYFAYRKYAPYEDGVILANTYKIPKGISETHLMYYLVNTSLKEHRKW AIKFLGEYDQKQWFKYVVIASIIQKESANEEEMPLVSAVIHNRLKLKMRLQMDGSLNYGK YSHTKITPEMIRNDTTSYNTYRYSGIPKAPVGSVSFKAIQAAVFPANVDYLYFVRNKNGV HSFSKNYQEHLRNFSK >gi|197282977|gb|ABQU01000073.1| GENE 12 11783 - 12724 1115 313 aa, chain + ## HITS:1 COG:BS_citH KEGG:ns NR:ns ## COG: BS_citH COG0039 # Protein_GI_number: 16079964 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Bacillus subtilis # 5 308 6 311 312 255 41.0 9e-68 MERVKRVGIIGAGNVGSTLAYILSATTPYQIVLRDKDKDRARGMLLDMFQASCVGENFAK LDVIASPKDLSGCDVIVIAAGSPRLPGMSRNDLLFANAKVISEIAKDIRENAPESIVILV TNPLDAMVYTMLRETGFDSKQVLGMAGILDSARMASFIYERLQCAPGQIVAPVMGGHGDD MVPLPRFSMVNGVPLSELLEQKEIDEVVKKTRNAGAEIVSCLKKGSAYFAPARATAEMVR AIMSDSHKILPCSVLLQGEYGYSDVVGGVPVELGIHGVERIVELKLNEEEKLQFDKSIQS VKGLIDELKTSYF >gi|197282977|gb|ABQU01000073.1| GENE 13 12808 - 13119 416 103 aa, chain + ## HITS:1 COG:jhp0536 KEGG:ns NR:ns ## COG: jhp0536 COG1146 # Protein_GI_number: 15611603 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Helicobacter pylori J99 # 1 103 1 103 113 135 62.0 2e-32 MGLLKAPDNTPVWVNESRCKACDLCVSVCPSGTLAMCLDEHKVLGKMVKVINPESCIGCG ECELHCPDFAIAVADRKEFKFAKLTDEARQRAESIKSNGFMAL >gi|197282977|gb|ABQU01000073.1| GENE 14 13135 - 14262 1350 375 aa, chain + ## HITS:1 COG:HP0589 KEGG:ns NR:ns ## COG: HP0589 COG0674 # Protein_GI_number: 15645214 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Helicobacter pylori 26695 # 3 375 2 375 375 518 67.0 1e-146 MSREFIANGNELVAHAAIDVGCKFFGGYPITPSSEIAHEMSVFLPRENGAFIQMEDEIGG ISVALGASMSGTKAMTATSGPGISLKAEQIGYGFMAEIPLVIVNVMRGGPSTGLPTRVAQ GDVAQAAHPTHGDYQSIALCPGSLEEAYMETIRAFNLAEKFMTPVFLLLDETLGHMHGKA IVPDLEEIQKNIINRRIYNGDKKDYKPYGVPQDEPAILNPFFGGYRYHITGLHHGPTGFP TEDATLSQNLIDRLFNKILSKKNEIISYEEYQLEDAEILLIAYGSTSRSAKEAIDRLRGE GIKVGLFRPITLWPSPKEELEKLGKRFNKILVAELNKGQYVSEIEHSMKKSVNLLTKANG RPLSPIEIMNKIKEL >gi|197282977|gb|ABQU01000073.1| GENE 15 14264 - 15097 880 277 aa, chain + ## HITS:1 COG:jhp0538 KEGG:ns NR:ns ## COG: jhp0538 COG1013 # Protein_GI_number: 15611605 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit # Organism: Helicobacter pylori J99 # 1 273 1 273 273 474 77.0 1e-133 MAFNYDEYLRVDKMPTLWCWGCGDGVILKAIVRAIDKLGWNMDDVCLVSGIGCSGRVSSY VNCNTVHTTHGRTLAYATGIKLANPTKRVIVVGGDGDGLAIGGNHTIHACRRNIDINYIL INNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPNFDACKLASAAGASFVARESVLDPKKI EKVLVEGFQNEGFSFFDIFSNCHVNLGRKNKMGEAVDTLKWIESMIVPKKKYDELNEEER KGKFPTGILLHDTNKVEYCKAYREVQEKAQAKKGGVR >gi|197282977|gb|ABQU01000073.1| GENE 16 15094 - 15660 732 188 aa, chain + ## HITS:1 COG:jhp0539 KEGG:ns NR:ns ## COG: jhp0539 COG1014 # Protein_GI_number: 15611606 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit # Organism: Helicobacter pylori J99 # 1 184 1 184 184 254 70.0 9e-68 MRRQLRFTGVGGQGVLLAGEILAEAQIRNGGYGVKAATYTSQVRGGPTKVDILLDNEEIL YPYANDGEVEFMLSTAQISYDQFKSGLKEGATIVVEPNLVIPSQEDKKKYQIFPIPIITI AKEEVGNVVTQSVVALAITVTLTKCVDRDLVFETMISKVPAKVVELNKKAFELGEKYAKE ALEKGALQ >gi|197282977|gb|ABQU01000073.1| GENE 17 15935 - 17473 892 512 aa, chain + ## HITS:1 COG:Cj1377c KEGG:ns NR:ns ## COG: Cj1377c COG1145 # Protein_GI_number: 15792700 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Campylobacter jejuni # 21 507 53 553 553 289 34.0 1e-77 MKLEHLPLGNLLLDQKDAVYNEKLEILNQVQEIFDDFRLDIQKSLEIDNKIAIFYQAQNG EIPNAVRGFSQQAKDKFEVEILDVDNIQRVNGKFGAFEAESENGERVGFSQAVMFVYDEN LLRFKGFFSVADFDSPLDLLKALEANLGEYSYKEMIAYKEDFCQYHHRREKHCTKCVESC PTFGVGANDSLMELVFSPIDCISCGACVGVCPTSCLEYSELPKEGLEEIVEIYKNRQIFL CDEVGYRQLIEKNIILPTNLIPLVLPNLKMLNENDWLMMLQVSQNDIVVFGDKSSQIGFV NNITKQIYQRECILIADSLDEIEKCALEVKGFESYLYKNRYSRPHRESLAQRIQYMIKDK EFGIAKSVAPIFYGDLKVDSSKCTLCLSCVGACNVNAIFAKSDDFSLRFNPSLCTTCGYC VESCPEKVMEVSREGMRLEASYFKSREIAKDTPFLCVECGKPFSTKKSIDKIFALLSPSF SADSKKLRTIQCCPDCKVKVMFQDQINQKVGV >gi|197282977|gb|ABQU01000073.1| GENE 18 17475 - 18077 629 200 aa, chain + ## HITS:1 COG:no KEGG:WS1144 NR:ns ## KEGG: WS1144 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 9 198 3 196 198 108 35.0 9e-23 MLEKLSKEELMNLNNARILYYDFFNGFFVFELLDDRVEIFQKQLAILKNAPLSEEVEADF LLLENEISHNGIVNIKDEFSRLFALPFGEKQVGSHLSHFYENCVGGNSLLQIKALIKKSD IRINSKDFKETEEHLGFLFGFMRYLIETNNEELAKEVFLYANKAFLGLVSEIKERRDSKY YLALARILESFLKFEEEVYA >gi|197282977|gb|ABQU01000073.1| GENE 19 18158 - 18352 247 64 aa, chain + ## HITS:1 COG:no KEGG:WS0732 NR:ns ## KEGG: WS0732 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 60 4 64 67 62 59.0 6e-09 MEKSRREFLKNATKTSIAVAGVSVALAGCSKKGSSENLVRGKSPKTEILYQKTKQWDMYY SVAK >gi|197282977|gb|ABQU01000073.1| GENE 20 18369 - 18923 594 184 aa, chain + ## HITS:1 COG:Cj1511c KEGG:ns NR:ns ## COG: Cj1511c COG0243 # Protein_GI_number: 15792825 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Campylobacter jejuni # 10 184 11 180 934 238 61.0 5e-63 MSEAIKRRQTRRAFLKMTALGSLAGASVALGADSQKTMRPATAQELQEKYPNSQKIKTIC THCSVGCGIVAEVVDGVWVRQEVAQDHPVSQGGHCCKGADLIDRARSETRLRYPLEKKDG KWTRLKYDEAMDKIAAQLKQIREESGPDAVMFLGSAKCSNEQSYYIRKFAAFFGTNNIDH CARV >gi|197282977|gb|ABQU01000073.1| GENE 21 18972 - 21194 2727 740 aa, chain + ## HITS:1 COG:Cj1511c KEGG:ns NR:ns ## COG: Cj1511c COG0243 # Protein_GI_number: 15792825 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Campylobacter jejuni # 1 738 198 931 934 769 52.0 0 MTNHLGDMMFSKYILIIGANPAVNHPVSMVHILRAKEKGAKLVCIDPRFTKTAAKCDEFH RIRSGTDIAFAYGLLNHIIAKNLYDEKYLKERVYGYEEIIKEAQKFPPEVAADICGIPAD EIRHIAEEMAAAKPASLIWNQGLTQHTVGTSNTRIMPILQMFLGNIGKNGGGVNILRGHD NVQGASDMNNLADSLPGYYGLGEPAWKHFCKHWGVEYEWMLGRFKNKEMMEATGFAHSTW KFGVLDDENMANNGGTKLRALVVIGSGMTTVSLLDLQKKAMDALDLVVFVDPYVNDLAIY SDRKDNLFMLPAASQMETAGSVAATNRSYQWRSKVMDPLFECRPDEEFLFGLADRLGFLK EYQWRLYDIAKSKGRDKFIWPDDATTELTQSIRSIGLQGMSPERLKAHQENWHMFDKVTL EGSGPFKGDYYGLPWPCWSDKHPGTPVMYNDSIPVMRGGMGFRVNWGVTSPDGQSMLTNR TLPNAKYQGGHAPISAANAESLGIKLTEEEKQAIAGTTFAMGIGNNILVEKALEAGLCPY GNGKARARVWNWYDQIPLHREPLHSIRGDLVSKYPNFPDKKNHFRANIKYISRQNEKDWV KEYPVNMLSGRLVAHMGTGAETRSAKYLAEVEGEMFVEIHPDKAAEMNIRNGDQLWIYGT NGARILVPAKISTRVDYNSIWLPQNFSGMDQGESRLENYPEGTKPYAIGESANMISSYGF DYNSACPETKCGLCRIEKAQ >gi|197282977|gb|ABQU01000073.1| GENE 22 21205 - 21834 706 209 aa, chain + ## HITS:1 COG:Cj1510c KEGG:ns NR:ns ## COG: Cj1510c COG0437 # Protein_GI_number: 15792824 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Campylobacter jejuni # 14 207 13 207 213 268 67.0 5e-72 MSDTNQEILANFSRIKFYCDTNRCIECHGCDVACKEAHHLPVGVNRRRVVVLNEGQVGKE SAVSVACMHCADAPCAQVCPVDCFYIRADGIVLHDKKTCIGCGYCLYACPFGAPQFPKNG VFESRGAMDKCTFCAGGPEETNSDEEYRLYGQNRIAEGKVPMCASMCSTKALLAGSSEEV SNIITHRATVRGENIPNAVPNVWKTAYGN >gi|197282977|gb|ABQU01000073.1| GENE 23 21845 - 22049 195 68 aa, chain + ## HITS:1 COG:no KEGG:HH0226 NR:ns ## KEGG: HH0226 # Name: fdhC # Def: formate dehydrogenase-N (EC:1.2.1.2) # Organism: H.hepaticus # Pathway: Glyoxylate and dicarboxylate metabolism [PATH:hhe00630]; Methane metabolism [PATH:hhe00680]; Metabolic pathways [PATH:hhe01100] # 1 68 1 67 324 84 62.0 1e-15 MKTCKNFFRIFVIFFGVAAVLWAANPSVPQEGGKQYAEVIEGNNALMQNPMNPKLYGGPE VEAIKAWG Prediction of potential genes in microbial genomes Time: Tue May 24 02:48:47 2011 Seq name: gi|197282976|gb|ABQU01000074.1| Helicobacter pullorum MIT 98-5489 cont2.74, whole genome shotgun sequence Length of sequence - 27904 bp Number of predicted genes - 30, with homology - 30 Number of transcription units - 8, operones - 6 average op.length - 4.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 + CDS 2 - 742 508 ## COG2864 Cytochrome b subunit of formate dehydrogenase 2 1 Op 2 . + CDS 742 - 1524 635 ## COG1526 Uncharacterized protein required for formate dehydrogenase activity 3 2 Op 1 . - CDS 1538 - 2908 1097 ## COG0733 Na+-dependent transporters of the SNF family 4 2 Op 2 . - CDS 2982 - 3908 658 ## COG3980 Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase 5 2 Op 3 3/0.000 - CDS 3909 - 4982 1243 ## COG0082 Chorismate synthase 6 2 Op 4 3/0.000 - CDS 4979 - 5653 721 ## COG0571 dsRNA-specific ribonuclease 7 2 Op 5 . - CDS 5656 - 6087 540 ## COG0328 Ribonuclease HI 8 2 Op 6 . - CDS 6062 - 7114 595 ## HH0697 hypothetical protein - Prom 7146 - 7205 9.6 + Prom 6962 - 7021 6.5 9 3 Op 1 2/0.000 + CDS 7240 - 8898 1392 ## COG0358 DNA primase (bacterial type) 10 3 Op 2 . + CDS 8876 - 9853 996 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 11 3 Op 3 . + CDS 9865 - 10482 580 ## COG0778 Nitroreductase 12 3 Op 4 . + CDS 10549 - 11658 1185 ## COG0840 Methyl-accepting chemotaxis protein + Term 11670 - 11706 1.1 - Term 11634 - 11677 1.4 13 4 Op 1 . - CDS 11683 - 12255 612 ## WS0228 hypothetical protein 14 4 Op 2 . - CDS 12323 - 12544 274 ## gi|242309262|ref|ZP_04808417.1| predicted protein 15 4 Op 3 . - CDS 12544 - 13371 560 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 16 4 Op 4 . - CDS 13364 - 14719 1698 ## COG0579 Predicted dehydrogenase 17 4 Op 5 . - CDS 14730 - 15461 234 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 18 4 Op 6 . - CDS 15448 - 16701 815 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 19 4 Op 7 . - CDS 16776 - 17117 396 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family 20 4 Op 8 . - CDS 17117 - 17446 306 ## WS1319 hypothetical protein 21 4 Op 9 . - CDS 17436 - 18119 485 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) - Prom 18139 - 18198 6.9 + Prom 18181 - 18240 7.2 22 5 Tu 1 . + CDS 18272 - 19534 991 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Term 19726 - 19776 1.0 - Term 19235 - 19281 2.1 23 6 Op 1 . - CDS 19492 - 19914 181 ## WS0828 hypothetical protein 24 6 Op 2 . - CDS 19880 - 22090 2578 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain - Prom 22208 - 22267 7.3 + Prom 22083 - 22142 9.6 25 7 Tu 1 . + CDS 22271 - 24694 2759 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase + Prom 24750 - 24809 13.1 26 8 Op 1 1/0.000 + CDS 24834 - 25454 699 ## COG0560 Phosphoserine phosphatase 27 8 Op 2 2/0.000 + CDS 25466 - 26470 1193 ## COG0176 Transaldolase 28 8 Op 3 22/0.000 + CDS 26538 - 27074 886 ## PROTEIN SUPPORTED gi|239524318|gb|EEQ64184.1| 50S ribosomal protein L25 29 8 Op 4 3/0.000 + CDS 27079 - 27663 649 ## COG0193 Peptidyl-tRNA hydrolase 30 8 Op 5 . + CDS 27663 - 27903 179 ## COG0795 Predicted permeases Predicted protein(s) >gi|197282976|gb|ABQU01000074.1| GENE 1 2 - 742 508 246 aa, chain + ## HITS:1 COG:Cj1509c KEGG:ns NR:ns ## COG: Cj1509c COG2864 # Protein_GI_number: 15792823 # Func_class: C Energy production and conversion # Function: Cytochrome b subunit of formate dehydrogenase # Organism: Campylobacter jejuni # 1 244 37 293 310 221 48.0 8e-58 NSPNAVGWGEIFTLLQGHYFATIFAIIIVLVPLAFLGHFVIVGQKKFSHGKKIKVFSTYN IVVHWCAAIPFIILCLTGLIMIFGDKLGGGGFVRFARDVHGIATILFAIFGVLMFLMWVK PALFKLYDIKWLMIMGGYLSKEKRPIPAGKFNAGQKMWFWVCTIGGFMMVISGAFMFFQF SDIETLRIMALAHNVIGFLIVALLITHIYMAVFAIEGALNSIIDGNMGEEELAILHSYYY QELNKA >gi|197282976|gb|ABQU01000074.1| GENE 2 742 - 1524 635 260 aa, chain + ## HITS:1 COG:Cj1508c KEGG:ns NR:ns ## COG: Cj1508c COG1526 # Protein_GI_number: 15792822 # Func_class: C Energy production and conversion # Function: Uncharacterized protein required for formate dehydrogenase activity # Organism: Campylobacter jejuni # 21 260 19 260 260 175 39.0 7e-44 MERFCQNLQIEQISPSGFISTREDFVINEERIAFYLNGEKLLSVMSVPVEQDYHIVGFLM SEGVISNISQIDSIKIAEDGKSVWLEAQIHQEMLKNLFREKTLTSGCCVGVAGNLEGNVI KKFIANPYKVTTKKIFEHLREFEENSLLFSKTGCVHKAMVVLKEKTLISEDIGRHNAIDK VMGKARMQGFDTEDSMLFVSGRLSLEMIVKAVMHNIPIVVSKAAATFMGIKAAQETGVTL IGFARGERANVYTHSGRILG >gi|197282976|gb|ABQU01000074.1| GENE 3 1538 - 2908 1097 456 aa, chain - ## HITS:1 COG:PM0380 KEGG:ns NR:ns ## COG: PM0380 COG0733 # Protein_GI_number: 15602245 # Func_class: R General function prediction only # Function: Na+-dependent transporters of the SNF family # Organism: Pasteurella multocida # 2 453 7 455 455 503 63.0 1e-142 MQRQTWSNQITYILTVAGATIGFGATWRFPYLVGENGGGAYVLVFIIAMLLVGIPIILVE NVIGRMAHKNSIDAFDTHSKYNLWKIVGYMGVIGAFGILAYYMVLGGWVISYIINIFLSL FSSLGLDLSSPITKEITSNFYTQNIENSPLLIGFYTFIFVVINWIILKKGIIEGIEKSVK WLMPLLFLCLIGMIIRNLTLDNAIEGIKFYLIPDFSAITPKLFLYVLGQVFFALSLGFGV MITLSSHLKKEENLVKTAYITGIINTLVAILAGFIIFPSLFSVGLAPDSGPSLVFKSLPI AFSHMFFGSFFAIVFFILLLIAALTTSLTIYQVIISILEEKFKFSHNKAVSFTLIVVFIF GNLPCILTYGPWREIIFWGRNIFDNFDFISGNIFFVLTALGSVLFVGWVLGEKSIKEINN YSKKTSTFSIVWFYYIKYIVPLIIIAIFIGGFIIKV >gi|197282976|gb|ABQU01000074.1| GENE 4 2982 - 3908 658 308 aa, chain - ## HITS:1 COG:HP0326_2 KEGG:ns NR:ns ## COG: HP0326_2 COG3980 # Protein_GI_number: 15644954 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase # Organism: Helicobacter pylori 26695 # 7 248 5 242 290 62 25.0 1e-09 MHKKAFIFADIQTGVGLGHFSRCTALLHILEQNNIQATLLDSSLLLSSYMDFELKKCNLA VIDSYVLELESYQKVANLAPHCIFFDDTLRLPYPKGILLNNSPSASKAIYQKHYPNHTLF LGSNYRLLQKPFLEQLKTKQKFTPKTISKILITLGGEDILNLTKWIITLLLMQNPNYQIH YIHKDTNLHSNAKGYYGLSPKQMANLFTQMDLCICACGQTLIEILSCKIPCIALEIAPNQ HENLKSYQEAILAIKEVWNIDKNTLQSYLLQHLNNIKNPNTQNQLIQKGIEILNQPLKWE ESLQKLLF >gi|197282976|gb|ABQU01000074.1| GENE 5 3909 - 4982 1243 357 aa, chain - ## HITS:1 COG:jhp0608 KEGG:ns NR:ns ## COG: jhp0608 COG0082 # Protein_GI_number: 15611675 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Helicobacter pylori J99 # 1 356 1 362 365 477 66.0 1e-134 MNTFGTRLKLTTFGESHGAGIGGVLDGLPAGLEIDTNFLNLEMQRRQGGRNLFSTQRKEA DEVEILSGVFEGKSTGTPLGFFIRNHATKSSDYNNIKDIFRPGHSDFTYFHKYGIRDYRG GGRSSARESAARVAAGAIAKMLLKHFKITLRSGIFSVGGIDCQEIDFNFAKESEIFSLDK NTEQAQKNKIMEARNSHNSVGGTALISAINIPIGLGEPLYYKLDSAIGELMLGLNGVKAV EIGSGIESTKMFGSEHNDSITQKGFLSNHSGGILGGISNGEEIYFKVHFKPTPSIFIPQS TITTNNQECTCEIKGRHDPCIAIRGSVVCESMLALILADMLLLNATSKLENLKKIYF >gi|197282976|gb|ABQU01000074.1| GENE 6 4979 - 5653 721 224 aa, chain - ## HITS:1 COG:HP0662 KEGG:ns NR:ns ## COG: HP0662 COG0571 # Protein_GI_number: 15645286 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Helicobacter pylori 26695 # 3 224 19 240 240 231 56.0 1e-60 MDFNHFQQTLGYHFKNQNLLKEALTHKSAKKSTHNERLEFLGDAVLDLIIGEFLYKKFPS SPEGELSKMRASMVNEKAFAKIARYLGIGEYLFISHSEEQNHGRDKDSILSNAFEAIIGA IYLESGLEKVQKIVLKILEILYPKIDIQHLFYDHKTSLQELTQALFGVIPEYVVLDSKGP DHNKEFLIGVFIQGKEYAHASGKSKKEAQQNCAKIALEILKETK >gi|197282976|gb|ABQU01000074.1| GENE 7 5656 - 6087 540 143 aa, chain - ## HITS:1 COG:HP0661 KEGG:ns NR:ns ## COG: HP0661 COG0328 # Protein_GI_number: 15645285 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Helicobacter pylori 26695 # 1 137 1 137 143 157 54.0 6e-39 MKRVTLFCDGSSLGNPGYGGWCGILRYKNYEKILKGSAKNVTNNQMELSALIFSLEALKE PCEVLVVSDSKYVLDGLSKWLPNWIAKDFKNIKNPDLWKHYLQVSKKHHIITEWVRGHNG HKENELCDKIAKEEALKLKEQKE >gi|197282976|gb|ABQU01000074.1| GENE 8 6062 - 7114 595 350 aa, chain - ## HITS:1 COG:no KEGG:HH0697 NR:ns ## KEGG: HH0697 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 7 350 2 361 361 205 36.0 2e-51 MNFLENIDYRDPLFGIMIFIFLVGIISLFAYYWNYIVSKKRHQSFIKFMESFDYIGFDKE IKEFLALSPNPTPSILFMANMYQKGANYEKAIRLYATLLDYIKNPIDKIPILESLGNVYY KAGFPLRSKEIYLEILHHYPRSCKVLKSLISIYEELKLYQDALNALDCLEEIEGGTILHR HYLQTKILISNADNNQEKSKKLLMLLQKDVKLSRIILKYFKDFYPSLFWESIQNLHKEQI LNVLDILWNLNPNELPNTPPNNKLLQDIFQAKGFYNLTPDSKSTFELEVLTLLHKNQNYK GDLKFQYLCTSCKANTPLPFETCPHCKELLTLQTLVFLKEKQDETRYSLL >gi|197282976|gb|ABQU01000074.1| GENE 9 7240 - 8898 1392 552 aa, chain + ## HITS:1 COG:HP0012 KEGG:ns NR:ns ## COG: HP0012 COG0358 # Protein_GI_number: 15644645 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Helicobacter pylori 26695 # 1 544 1 557 559 437 42.0 1e-122 MITQESIDALKNQLDVVEVVSHYIELKKMGSTFKACCPFHQENTPSFVVNSSKGFYHCFG CGASGDSITFVMEYEKINYKEALEKLAQFYNVTLVYDNQKQQNIDSKIMDFMNDYYQNGI TKEVESYIHSRGISNAMKEKFELGYAGHNYEIMAYLQKNSVDMQEALNLGILGVDNENGV KRYYARLTQRLIFPIRSPQNKIIGFGGRTLGNHPAKYINSPQTKLFNKSQILYGYPQAKE SIYKKEEIIITEGYLDVIMLHQAGFTNAVATLGTALTKEHLPLLSKGNPKIIVAYDGDNA GMNAAFKAASLLSLAKKEGGVVLFDGGLDPADMVKNGEIERLKELFVSPIPLIDFVLEEM IKKYDITNPVQKDKCLQEVLEYLHQFSAVIQEEYKGFLAQKLKLPSHLIKTQKYNEAKIV KNQGDIYDLAEKIIIKSVLEDSSLLEYVMDFLEPSMFFTQQESFLKLIKGDLQDKSLIGI LLDSKIKPQNKEKLKQQMIMILHKFYEEQKNKIIQDKNLSLREKAFLLRKYQKYLENLKK GDLIIYESFSAF >gi|197282976|gb|ABQU01000074.1| GENE 10 8876 - 9853 996 325 aa, chain + ## HITS:1 COG:jhp0011 KEGG:ns NR:ns ## COG: jhp0011 COG0482 # Protein_GI_number: 15611082 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Helicobacter pylori J99 # 1 323 4 349 350 379 56.0 1e-105 MKALALFSGGLDSLLAIKIIKDMGIDVLALHFNIGFVGKNDKSEALKEILAQIDVPLKVI DIRKQFFDEVLFAPKYGYGKYFNPCIDCHGNMFSHAFSLLESEGASFVISGEVLGQRPKS QRAEALLQVEKLCNAQGLVVRPMSAKLLPITIPEQKGWIDRERLLDIHGRGRERQLKMVE EYGIKNYAKPGGGCLLTDTSIANKIKDLQSHREIVFEDMEMVKYGRYFILPNGGRCVIAR NEEENQKLSFKHPKMSKIELLNCLGPLGLVEKDSSQEDKEMAIALTLTYGKTEMDKSYKV HFEGKEVEMKPFVSKEKAREFLLNS >gi|197282976|gb|ABQU01000074.1| GENE 11 9865 - 10482 580 205 aa, chain + ## HITS:1 COG:Cj1066 KEGG:ns NR:ns ## COG: Cj1066 COG0778 # Protein_GI_number: 15792391 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Campylobacter jejuni # 2 204 1 201 201 214 51.0 1e-55 MIKKEIFSEIICERYSCRNFKERMLTQEEMDYILEAGRLSPSSLGLEPWKFLVVQDSNKK AEIAEIANGQKHVEKCGAIIVVVARLDFGEYFIPKLQGRGLSQEEMQKRIDVYKPFIDGM NEQEKLHYAREQTYLALGNLANAACAIGLGSCIIGGFNAEKLDTYLNLDASKERSSVMLV VGERNEVDIPKKARFDKESIITFIN >gi|197282976|gb|ABQU01000074.1| GENE 12 10549 - 11658 1185 369 aa, chain + ## HITS:1 COG:Cj0448c KEGG:ns NR:ns ## COG: Cj0448c COG0840 # Protein_GI_number: 15791812 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Campylobacter jejuni # 4 362 7 362 365 191 36.0 1e-48 MFRNSKREEELIIENRELKKKVEQLENALKSCSVQNEDYQKSFAQIELHQKQTGVFNSML EMMTQSCAKNLKILQDDFSNSVNMLQESKKTSLKNYEQIQALETSIGGTVANVTEKLISF QGMIAQVYQDLDSITNVIKLITDVSDQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLA ERAQKATREIEMNIQVLRQNFSEVQTSTEEIVGDMDSVNDEVAKFMEMGQTSISVRNDSA NVLDTTFIALVKLDHLLFKINSYKAIIEDNKEMQLATHHECRLGKWYDSGIGKEHFSQLS SYAGLETPHSLVHDSFRGALEVFKETGIQKGDEIVEYIKQGEIASDGVVAILDNLLKEKI SERQNSANK >gi|197282976|gb|ABQU01000074.1| GENE 13 11683 - 12255 612 190 aa, chain - ## HITS:1 COG:no KEGG:WS0228 NR:ns ## KEGG: WS0228 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 17 189 20 207 207 70 29.0 4e-11 MLSSVNPYGLGNIYTQNIQPNTKESQPSTTQNIQDSQELPNLSKETLEIRKFSDGVKGAN EMVGAMQIADITLNALSTQAKDMGEINPENLNILDKTAKAAQFRNEALFGRELSLNLAGE NVSLSLPLPSQMAQDDSSLIESLSQKHNEISDKMSTISTLIEKASLPLSNNTQNYDFENF DTNSFKNLFQ >gi|197282976|gb|ABQU01000074.1| GENE 14 12323 - 12544 274 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309262|ref|ZP_04808417.1| ## NR: gi|242309262|ref|ZP_04808417.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 73 1 73 73 92 100.0 9e-18 MENLRKELKQQQKTSLKAIKIALICCVITILFATLSLWILLNQITATANLSKNQKNLEQK IMQLEQNQKMPTH >gi|197282976|gb|ABQU01000074.1| GENE 15 12544 - 13371 560 275 aa, chain - ## HITS:1 COG:Cj0141c KEGG:ns NR:ns ## COG: Cj0141c COG1108 # Protein_GI_number: 15791529 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Campylobacter jejuni # 1 265 1 264 267 181 45.0 1e-45 MIEILEYTFVQNAIIGAFFTSIICGIIGTIAVTNRMVFIAGGIAHSVYGGVGIAAFFGLP IMLGSTIFSILCAIILAYMLLYGKERLDSLVGSLWAFGMALGIILVELTPGYNKDFMGYL FGSILSITENDIYYMIIFSILLILFIIFNYRIILGISYDSEFTQLQGIRTNFFSMALMIL IALGIVISMRSVGIILIVALLSIPAYCSEIFTNSLAKMMFASSLISFICMLGGILVSYFY DLQAGASIVILLSIFSFILALIHHFTTTKYFSKDY >gi|197282976|gb|ABQU01000074.1| GENE 16 13364 - 14719 1698 451 aa, chain - ## HITS:1 COG:HP0086 KEGG:ns NR:ns ## COG: HP0086 COG0579 # Protein_GI_number: 15644716 # Func_class: R General function prediction only # Function: Predicted dehydrogenase # Organism: Helicobacter pylori 26695 # 1 447 1 449 450 483 54.0 1e-136 MNNSYDVAIIGAGISGSALFYALTHYTDIKKVALLEKYSQPATLSSSGNNNSQTIHSGDI ETNYTFEKAKKVSRAAKLLVSYAFYHNLQNKSIFEYQKMAIGVGEKEVDFMTKRHEEFKE IYPNLEFFDKETLKQIEPNVVKMLDGSDRPEAIIGSGMRKSFCAMNFCSTANHMIEQSIF GEHKVFFNHKVTNIIQQGDGGYTIQSQGQEPISASFVLVNAGAHSLLLAQNMGYGLDLGC LPVSGSFYFIPGNKLQGKVYTVQNPKLPFAAIHGDPDVVAQGKTRLGPTALALPKLERFK NGTYADFMKSFGFGSATTKIMWDLLSDSEIRNYIFRNFIYEIPSIGKKYFWEEAKKIIPS IQLNELSYAAGFGGIRPQVLDKTQKKLILGEKKIKSNKGITFNMTPSPGATSCMKNALVD MLEITEYLQAAIKMDKIKEELNEEDLEWLVD >gi|197282976|gb|ABQU01000074.1| GENE 17 14730 - 15461 234 243 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 25 212 25 217 309 94 32 6e-19 MQNNNPKKIIECKNVNFYFTKERILYNVDWTIYENDFWAIIGPNGGGKSTLARLLVGLLK PSSGKILKSQNLRIGYVPQNTFLNRHFPISTLEVVMMGFLKPKLFGGFLPKNAKKNAMEL LEQFHLESYADKKIGSLSGGQRQRVLIARALCGNPNLLILDEPTASIDQKNQKEIYDLLQ TLNKEKTIIMISHDISVLLGYAKKVLYVNQEAKEHELPQINNQIAKEHFCEVEMLMQSQY FKN >gi|197282976|gb|ABQU01000074.1| GENE 18 15448 - 16701 815 417 aa, chain - ## HITS:1 COG:HP0087 KEGG:ns NR:ns ## COG: HP0087 COG0791 # Protein_GI_number: 15644717 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Helicobacter pylori 26695 # 24 406 57 443 457 264 38.0 2e-70 MPNQNPKDYISINATLKTSSTKALKQEYLKHFFAPFSKNPKHTSTEAKWGLQQALRNYGF GENLQPYTLQEIQLLEEEADFDNFPNAKKPAIITRSCDVRVLPTNKPRFLNPKQAGEGYP FDYWQNSSIYLGTPVLITHYSKSKKWVFIESGFVSGWVESLNVAILDNHQIQKLKNTKDF LVVKKDYTPLRNTHNEFLESARIGMLLPLIGSTKNLYESFIFTRTQRGYAKEVQVHLSTK NFTKFPMRFSSQNYASLAQNIIGEKYGWGGMLGNRDCSMFLRDTLGNFGFYLPRNSQAQI GKNQAAFIDLSHLNPPEKILAIKNHAIPFATLLGMKGHIMLYIGEINGEIFALHDIWGLK TLQNETQEGRKIIGKIAITPLNIGENIQGINQDTLLIKGIYGMRNLFNIDELEYAKQ >gi|197282976|gb|ABQU01000074.1| GENE 19 16776 - 17117 396 113 aa, chain - ## HITS:1 COG:all0195 KEGG:ns NR:ns ## COG: all0195 COG1393 # Protein_GI_number: 17227691 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Nostoc sp. PCC 7120 # 2 107 3 109 117 85 40.0 2e-17 MIKVYGIKNCGSVKKALNFLEEHKIQYEFIDFKKTPPSQEELELWLKTIPLTTLCNHKGT TYKKLGLKDKNLSQEEIKDYLLKEPTLIKRPVISTPNETIVGFDLEKYEKMQW >gi|197282976|gb|ABQU01000074.1| GENE 20 17117 - 17446 306 109 aa, chain - ## HITS:1 COG:no KEGG:WS1319 NR:ns ## KEGG: WS1319 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 21 109 17 105 105 70 41.0 2e-11 MQNNFDTFYLIGAILAASFGTAMTRLLPFFVFKNIANNNFLKYLQETMPLLIMTLLIFFS LLETPWHETYGIYEISGIFAATLCFLWFKNSVFSIFIGIIFYIFMIRIF >gi|197282976|gb|ABQU01000074.1| GENE 21 17436 - 18119 485 227 aa, chain - ## HITS:1 COG:MA3437 KEGG:ns NR:ns ## COG: MA3437 COG1296 # Protein_GI_number: 20092249 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Methanosarcina acetivorans str.C2A # 1 222 38 256 291 138 41.0 1e-32 MFKRSFIQSLPVLMGYLPLGMAFGILFSKLQLDWFYGILISILIFTGAGQFLLVSLISTY TGFLEIAIASFILNIRHIFYSLAITDEIKKFGIVKYYILFGLTDETFAVLKANHASLNLN QKDLEKNYFYITFFNHCYWVLGSGIGIFLGSGIGFQPNGVEFALTALFSVLTLSLLQNSI NKKPFYIGLVLGVIGLIIFPSKYFLLLSIFVGILILLFGKKWIDYAK >gi|197282976|gb|ABQU01000074.1| GENE 22 18272 - 19534 991 420 aa, chain + ## HITS:1 COG:Cj1434c KEGG:ns NR:ns ## COG: Cj1434c COG0463 # Protein_GI_number: 15792752 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Campylobacter jejuni # 290 390 332 429 445 62 37.0 2e-09 MKKYKFGILLAATKDSSFTLGTMIANIKDKMGDFVDIFYIIHDGFSLEDMEAMKKLSKNS EIVFSEFTQETFIENFRKFGGNALKFNFSSDFLGRWTHMVYACFEVFRFLEECESILYLD FDILILKGMEHLAKLKEQGISIAADRGKKRLNEVYPHYNGEFANNPIYRSGSVLVNDTIL DPKECYAFVYQKSVDVAYGLNDQGILSLLIYEKNLKTQNLGKEYVGSVHWLSNDEVYFVH AYGRDNRFWNNRLCHQIWREWEEYYNVWLKAGGSPYKGGFVANTTYGYERVRFHLIYKIG YAVIEIQRNLKSKWEYLKLPLIMIKITLKHKRKLREYHKKIQEFPHLKLPPLSAYDYNQI LQEKQSIPYRLGEAILEFYREWWKFDIFRLYKKINAIKKEAQLRFKNQNVSKPSKIHLSK >gi|197282976|gb|ABQU01000074.1| GENE 23 19492 - 19914 181 140 aa, chain - ## HITS:1 COG:no KEGG:WS0828 NR:ns ## KEGG: WS0828 # Name: grpE # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 22 140 5 124 125 131 55.0 7e-30 MIVLKKLSKHFRIILFLGIIPLYSMDLDSFYQQVHKQSLQKNYIHFRHRKLLSLEAYHLL TPQEKLSLKYSLILVSSQIESFIYLNTLSGVGISTQKGSHLQFDIKYYETLKDIGIGGKF HAMCVLPYFDKCILLGFETF >gi|197282976|gb|ABQU01000074.1| GENE 24 19880 - 22090 2578 736 aa, chain - ## HITS:1 COG:Cj0955c KEGG:ns NR:ns ## COG: Cj0955c COG0046 # Protein_GI_number: 15792284 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Campylobacter jejuni # 5 734 3 728 728 871 58.0 0 MQNLEQILKQHKLTTEDYQNILKILKREPNLVEIGIFSAMWSEHCSYKSSKIYLNGFPTR APWVIQGPGENAGIIDIGGGYGAVFKMESHNHPSFIEPYAGAATGVGGIMRDVFTMGARP VASLNSIRFGNIAKKDSMGAKHRYLLRGVVAGIGGYGNCMGVPTIGGEMSFEDCYEGNIL VNAFTLGIVKNDEIFYGKAEGIGNPVIYVGSKTGRDGLGGAVMSSDSFNEDSKSLRPTVQ VGDPFTEKLLLEACLELFKKDLIVGIQDMGAAGLTSSSFEMAGRSGSGMIMHLDKVPTRE ANMTPYELMLSESQERMLICAKKGCEEEIIEIFKKWELDCAVVGEVTNSGKMELFWHNEK CAEIPIAPLSENSPILKRPVSDNPQYLNGVESLNTKTLEQLNPNEIFTTLLKTPDISDKA WVYEQYDSTVQTNTLIKAGSGGASVIRVKENGKGLAMSVACPIRLCYLNPKEGAKQAVAK VGRDIALRGGRALAITDCLNFGNPENPEVMWQFKESCEGIKESCKALNTPVVSGNVSLYN QTNQSDIYPTPSIAGVGIVDDIYNLLSNDFKENNLEIYLLKSKHSTPQFGGSLVAKYFGN SIKDDISKIALEDELFLWNVLAVANERKLIEGASDIYQGGLAISLAKACIRGNIGCKSVE NLDNKSLFGEAPTQVLIAIKPQHIQDLHNLITNSNLQLEKVAILGGENIEIGNISIPLQE AKRIYFDSFKEIIQTL >gi|197282976|gb|ABQU01000074.1| GENE 25 22271 - 24694 2759 807 aa, chain + ## HITS:1 COG:jhp0111 KEGG:ns NR:ns ## COG: jhp0111 COG0574 # Protein_GI_number: 15611181 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Helicobacter pylori J99 # 1 804 1 804 812 1296 76.0 0 MKYIKFFKELNNKDVPVVGGKNASIGEMFQELVPMGIKVPNGFAITSEAYWYLLDSGGIR EKIKELLEGIDVTEIDVLNVRSKKIRDMIFGTPLPTDLREEILEAYRILSQEYNMEEADV AVRSSATAEDLPDASFAGQQDTYLSVQGQTELIHYIKSCMASLFTDRAVSYRASRGFDHF KVALSVGVQKMVRSDKGSSGVMFSIDTETGFKDAVFITSAWGLGENVVGGTVNPDEFYVF KPALELGKRPILKRQLGYKNIKMVYAAPGAKHPTKNVETTEEELKSFSLSDDEVLTLARY AILIEKHYSKEAGEYRPMDMEWAKDGNSGEIFIVQARPETVQSQKMKKQSNTLEKYFFKD KGQKEILLSGKAVGGKIGIGKIRVIDNIANMGELKKGEILVTDNTDPDWEPAMKKAAAVI TNRGGRTCHAAIVAREIGVPAIVGAVGATEKLETGMEVTVSCAEGEDGFVYNGIYEFEVE KVDLDSLEQPKTKIYMNIGNPEKAFAFSMIPNNGVGLARMEFIINNYIKAHPLALIDLHN GNKEFDGIEGVKEIMSGYANPKDFFIKKIAEGVGMIAAAFYPKPVIVRTSDFKSNEYCRM VGGKDYEPHEENPMIGYRGASRYYSEQYRQAFEWECQALAMVRNEMGFSNMKIMIPFLRT PEEGRRVLEIMRKNGLVQGENGLEIYVMCELPVNVILADEFLQLFDGFSIGSNDLTQLTL GVDRDGELVSHVFDERNPALLKMFKMSIEACKRHNKYCGICGQAPSDYPEIAEFLVENGI TSISLNPDSVIETWDKIVKLEKRLGIS >gi|197282976|gb|ABQU01000074.1| GENE 26 24834 - 25454 699 206 aa, chain + ## HITS:1 COG:Cj0282c KEGG:ns NR:ns ## COG: Cj0282c COG0560 # Protein_GI_number: 15791652 # Func_class: E Amino acid transport and metabolism # Function: Phosphoserine phosphatase # Organism: Campylobacter jejuni # 1 202 2 203 207 214 52.0 1e-55 MKLAVFDFDSTLMDGETIDLLARAHGSTQEVSDITKEAMAGKLDFYHSLKKRVKTLKGMP LQQVCEVCEGLTYNKGAKEIIEILKEKDYKVVVFSGGFDEGVSAGKKALGYDVHFSNTLH HKDGLLTGKVGGEMMFAYSKGRMLEKIQTLLGVSYENTIVVGDGANDISMFQYAQKKVAF CAKEILKKAANIVIDTKDLSLIKNYL >gi|197282976|gb|ABQU01000074.1| GENE 27 25466 - 26470 1193 334 aa, chain + ## HITS:1 COG:Cj0281c KEGG:ns NR:ns ## COG: Cj0281c COG0176 # Protein_GI_number: 15791651 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Campylobacter jejuni # 6 333 3 325 325 248 45.0 1e-65 MPNNISFSLWCDLIERDFLENEFIKMIEGGIIQGATSNPAIFQKSFMEESYQEQKDTLKD KKPKEIYESLAKSDIQRAAELLMPIYSNNPNDGYVSIEVDPNLCDDAKATIEEGVRLFKE IGYPNVMIKIPATKAGFSAMEELISQGISVNATLVFTKEQTIGCMEAFKRGYEVLKKNTK KESKDYPRAVVSIFVSRFDRKCDAILKENGIPAATLGVKNAQYLYRIINDYSLPCVRALF ASTGVKDDSLEATYYIKELYHQYAINTAPLATIEAFMQVDELQESYLPSFEELEEYFNAV KEAGIDIQKVSDELLAQGLEDFKNAFAKILESLV >gi|197282976|gb|ABQU01000074.1| GENE 28 26538 - 27074 886 178 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239524318|gb|EEQ64184.1| 50S ribosomal protein L25 [Helicobacter pullorum MIT 98-5489] # 1 178 1 178 178 345 100 1e-94 MLSGIIRESISKADTKSLRKNGYLIANIYGKGRENIHCAFKRNDFIREVKNKTDLIFEVE VGSQKYPVVIQEYQKDPITSEIIHVDLMLAQNGVEAKYSVKVRIVGIAKGLKNKGVLMVS KKRIKVKAAPEKLPKDYEINVTDLDVGDVVLVRDLPQNEGVKIVERDDVAIVGVIKSR >gi|197282976|gb|ABQU01000074.1| GENE 29 27079 - 27663 649 194 aa, chain + ## HITS:1 COG:Cj0312 KEGG:ns NR:ns ## COG: Cj0312 COG0193 # Protein_GI_number: 15791680 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Campylobacter jejuni # 1 180 1 178 181 167 51.0 1e-41 MFLIVGLGNIGDKYKNNRHNIGFRVVDALISNLNAIKQSDKNFEGELYKSSQILLLKPST YMNLSGKSVSAVKNFYKIKDMLVIHDELDLPFGVIKFKFGGGSGGHNGLKSIDNLCGNEY YRMRYGIGKPSTKEQVIDWVLGDFSKEEENDNIELIEYCMRVALEIAKLQNPDELSSKIS SLYTLNLKRETKEK >gi|197282976|gb|ABQU01000074.1| GENE 30 27663 - 27903 179 80 aa, chain + ## HITS:1 COG:jhp1391 KEGG:ns NR:ns ## COG: jhp1391 COG0795 # Protein_GI_number: 15612456 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Helicobacter pylori J99 # 6 80 5 79 355 62 41.0 2e-10 MSLFARYIGGLYLKYLFVLFVSLECFFVAIDLVKYLDELPNSANLVVLLVFYDFIYASNF ILPLSLILAQIVLVISMLRN Prediction of potential genes in microbial genomes Time: Tue May 24 02:49:18 2011 Seq name: gi|197282975|gb|ABQU01000075.1| Helicobacter pullorum MIT 98-5489 cont2.75, whole genome shotgun sequence Length of sequence - 51939 bp Number of predicted genes - 35, with homology - 34 Number of transcription units - 12, operones - 10 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 50 - 826 513 ## COG0795 Predicted permeases 2 1 Op 2 . + CDS 847 - 2379 1431 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) + Term 2457 - 2489 -0.8 3 2 Op 1 . - CDS 2351 - 3223 332 ## Cj1618c putative radical SAM domain protein 4 2 Op 2 3/0.000 - CDS 3226 - 4461 847 ## COG4591 ABC-type transport system, involved in lipoprotein release, permease component 5 2 Op 3 . - CDS 4458 - 7022 2832 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) - Prom 7102 - 7161 8.3 + Prom 6930 - 6989 8.7 6 3 Tu 1 . + CDS 7142 - 8161 931 ## COG0407 Uroporphyrinogen-III decarboxylase + Prom 8248 - 8307 7.9 7 4 Op 1 9/0.000 + CDS 8398 - 10575 2519 ## COG1966 Carbon starvation protein, predicted membrane protein 8 4 Op 2 . + CDS 10572 - 10778 113 ## COG2879 Uncharacterized small protein + Term 10971 - 11008 -0.1 - Term 10681 - 10734 2.8 9 5 Op 1 9/0.000 - CDS 10823 - 12082 1305 ## COG1538 Outer membrane protein 10 5 Op 2 27/0.000 - CDS 12072 - 15197 3010 ## COG0841 Cation/multidrug efflux pump 11 5 Op 3 . - CDS 15203 - 16261 1247 ## COG0845 Membrane-fusion protein - Prom 16365 - 16424 7.7 + Prom 16252 - 16311 4.6 12 6 Op 1 . + CDS 16395 - 18398 1377 ## COG1287 Uncharacterized membrane protein, required for N-linked glycosylation 13 6 Op 2 . + CDS 18409 - 18879 652 ## COG0315 Molybdenum cofactor biosynthesis enzyme - Term 18849 - 18875 0.3 14 7 Op 1 . - CDS 18930 - 20882 1076 ## COG1357 Uncharacterized low-complexity proteins 15 7 Op 2 . - CDS 20928 - 23390 1509 ## Mbur_1921 toll-interleukin receptor - Prom 23424 - 23483 10.1 16 8 Op 1 . - CDS 23596 - 25776 1793 ## COG4694 Uncharacterized protein conserved in bacteria 17 8 Op 2 . - CDS 25769 - 29704 2013 ## COG1002 Type II restriction enzyme, methylase subunits - Prom 29762 - 29821 6.0 + Prom 29483 - 29542 5.0 18 9 Tu 1 . + CDS 29691 - 29942 78 ## + Term 29953 - 29990 -0.8 19 10 Op 1 3/0.000 - CDS 30075 - 30440 538 ## COG0789 Predicted transcriptional regulators 20 10 Op 2 . - CDS 30454 - 31326 1036 ## COG2214 DnaJ-class molecular chaperone - Prom 31358 - 31417 11.7 + Prom 31293 - 31352 6.5 21 11 Op 1 2/0.000 + CDS 31388 - 34222 2231 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 22 11 Op 2 2/0.000 + CDS 34223 - 35551 1293 ## COG3004 Na+/H+ antiporter + Term 35564 - 35598 3.0 + Prom 36175 - 36234 7.5 23 12 Op 1 25/0.000 + CDS 36323 - 36637 347 ## COG1862 Preprotein translocase subunit YajC 24 12 Op 2 31/0.000 + CDS 36643 - 38220 1978 ## COG0342 Preprotein translocase subunit SecD 25 12 Op 3 . + CDS 38220 - 39191 1179 ## COG0341 Preprotein translocase subunit SecF 26 12 Op 4 . + CDS 39201 - 39542 324 ## Suden_1573 hypothetical protein 27 12 Op 5 . + CDS 39553 - 41991 2282 ## COG0495 Leucyl-tRNA synthetase 28 12 Op 6 . + CDS 41991 - 42491 461 ## WS1244 hypothetical protein 29 12 Op 7 . + CDS 42491 - 43642 1061 ## WS1243 hypothetical protein 30 12 Op 8 3/0.000 + CDS 43639 - 44775 1012 ## COG0285 Folylpolyglutamate synthase 31 12 Op 9 7/0.000 + CDS 44772 - 45701 1124 ## COG0739 Membrane proteins related to metalloendopeptidases 32 12 Op 10 3/0.000 + CDS 45620 - 46063 553 ## COG1664 Integral membrane protein CcmA involved in cell shape determination 33 12 Op 11 . + CDS 46050 - 49076 3116 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 34 12 Op 12 . + CDS 49078 - 49899 810 ## COG1692 Uncharacterized protein conserved in bacteria 35 12 Op 13 . + CDS 49908 - 51776 1488 ## COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Predicted protein(s) >gi|197282975|gb|ABQU01000075.1| GENE 1 50 - 826 513 258 aa, chain + ## HITS:1 COG:HP1498 KEGG:ns NR:ns ## COG: HP1498 COG0795 # Protein_GI_number: 15646107 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Helicobacter pylori 26695 # 2 257 98 353 355 180 39.0 2e-45 MPIFSIAFLIASAFVLLNATPFAYAKEKVDLIVERGYLGSYKSDLFIKYDNNYIYFAKIF PLLQSAEGIQVFEVENEEVLRIIEAPKATFNEGEWILENAKITTIQPQLEVGKNPLWVEE QKVYKTLVGFKPKILDNIYEKQGSISIVDAFEAMNLLEGQNINTQKLRASLYVLLLFPFF APLMMVCLSGFTPNSNRYANLGGITLGMILGILVVWGILFSFSRLSMSGFLQPEFSVIMP IGILALISAWLFVRLLKA >gi|197282975|gb|ABQU01000075.1| GENE 2 847 - 2379 1431 510 aa, chain + ## HITS:1 COG:Cj0953c KEGG:ns NR:ns ## COG: Cj0953c COG0138 # Protein_GI_number: 15792282 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Campylobacter jejuni # 1 510 1 510 510 656 64.0 0 MTALLSVSDKTNIVEFARGLIELGYEILSTGGTLKTLREEGIGAIEVSEYTQSPEMFDGR VKTLHPKIHGGILHRRKNLDDLQKAKEFGIRDISLVCVNLYPFKETIARTDDFDEIVENI DIGGPSMVRAAAKNFESVLIVTNPNDYMRVLEALKNNQNTIEFRKTMMIKAFEHTANYDC MIANYMNGRFNGGFGEQHFIAGKIVKPTRYGENPHQKGAYYEFGDFYSNNFKTLKGEISF NNLTDINNAVKIASSFGEQPCVCIVKHANPCGFAIKNNVLESYIEALKCDNVSAYGGVVA VNGEVDIELAQEINKIFIEVLVAPSITSEALKVFENKKKIKIFVCGGKVLKFPRDTQDFR HIEGGFVLQDSDKVQEDEVRNAKCVSNKKATMEQMQDLEIAYKIASLVKSNCVVYVKNSA MVAVGMGMTSRVDATKAALRKAEEMGLDLKGSVLASEAFFPFKDSIEEAHKVGVSAVIEP GGSIRDDEVIECANQNGIALYFTGIRHFLH >gi|197282975|gb|ABQU01000075.1| GENE 3 2351 - 3223 332 290 aa, chain - ## HITS:1 COG:no KEGG:Cj1618c NR:ns ## KEGG: Cj1618c # Name: not_defined # Def: putative radical SAM domain protein # Organism: C.jejuni # Pathway: not_defined # 1 277 21 298 305 231 43.0 3e-59 MKFNKIFIEVTNACGLSCSFCTPQKLPKNIINTENFSTICQKIASHTHLCALHILGDPLT LDNLLDYFNIATTHNIKLDITTSGFYLNPTNITLLLKHPSIHQINISLTSVLYQKNHQNL ERYLENVFLLCSKHQILKSQKFINLRLWNLNKNFNPPSINQPIYQLLTQYFNTPLKIPKT RLSYKIHLIQQPFFEWPDIDSTNSYTQGFCYGGSKQLGILNNGDIVPCCFDTKGEIKLGN IFKQSLEEIYNTQRYRMLLKNFQKGVLAEELCKHCSYPLYLSNARNVESL >gi|197282975|gb|ABQU01000075.1| GENE 4 3226 - 4461 847 411 aa, chain - ## HITS:1 COG:jhp0724 KEGG:ns NR:ns ## COG: jhp0724 COG4591 # Protein_GI_number: 15611791 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ABC-type transport system, involved in lipoprotein release, permease component # Organism: Helicobacter pylori J99 # 1 411 1 410 410 422 55.0 1e-118 MTHKGIIPFLIRRYLRFNKHQPFISITAILAFLGVCIGVMVLIVAMALMNGFDKEFERKL FIMNYPLTMISETFEKLDKTILEDLQKSFPHLKFSPFIQTQAISKMGNRMEGAMVFGVDF TLESQINPVFHQAYQQMQNFYTQNNQTYTPNTFDIIIGESLQNLYGLKYNSNLLLIFTHI TPNATNLSPTIKRFNVNGFFHSGLIAYDKGYIYTSLEAMQIIKNMPKNTYDGIHIYSSNP QKDILALQESYPQMRIIGWWEQNGNFFAALALEKRALFIVLMLIILVASLNIISSLLMTV MNRRREIALLLTMGASPKEIKKTFLYLGNFIGISGIICGSVLAAIILFVLANFPIISLPA DVYGSSKLPLELSLNDLLAILIGSFMIVFLSSYYPAKKATQINPLEVLRNE >gi|197282975|gb|ABQU01000075.1| GENE 5 4458 - 7022 2832 854 aa, chain - ## HITS:1 COG:jhp0723 KEGG:ns NR:ns ## COG: jhp0723 COG0653 # Protein_GI_number: 15611790 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Helicobacter pylori J99 # 13 854 13 865 865 1059 66.0 0 MLVNFVKKIFRNKNDRLIGHYKKEIKKINALEAKYQALSDENLQKVFNSIKQQVQEAKNP ESALIKALPHSFAITREASKRVLGMRHFDVQLIGGIALHEGKIAEMKTGEGKTLVATLPV CLNAMLGKGVHIVTVNDYLAQRDAETMRPLYEFLGYSVGIIIGGNYDDSNRLAQYSCDIV YGTNNEFGFDYLRDNMKYDYNQKVQKNHHFAIVDEVDSILIDEARTPLIISGPANKVLEN YKIANEVALKLKEEKDYTIDEKNRVILLTEEGINHAEKLFNIDNLYSIENAILAHHLDQA LKANNLFKKDKDYVLRDGEVVIVDEFTGRLSEGRRFSEGLHQALEAKEGVKIKEESQTLA DITYQNYFRLYDKLAGMTGTAQTEASEFLQIYNLEVVSIPTNLPIQRKDLNDLIYKTEKE KFKALVEKIVELHKKGQPILVGTASIEKSEKIHELLKSQRIPHSVLNAKHHAQEAEIIKD AGNKGAVTIATNMAGRGVDIKINDEVRQLGGLYIIGTERHESRRIDNQLRGRSGRQGDPG TSQFYLSLEDPLLRIFGSDKIKNIMDKLGLDEGEHIESKLVTRSVENAQKKVENMHFEAR KHLLEYDDVANEQRKAIYRLRDELLNPNQDISHRIIENRHDCITMLLQKAEVFNDGDDLE SLCAMAAEDFNISLDKQALKDSYKEKNEFESYIDEILTKSYEEKMSILDKPTRIEIEKLV YLQTLDNLWRDHLYIMDNLKTGIGLRGYNQKDPLVEYKKESYNLFLELVEQIKYTAIKML HKVQLKNATQENEEEARLTRLRLNEVNKNTHTNHQNTSLIKKKPVRNEPCPCGSGKKYKN CCGMSGPKKGIFAK >gi|197282975|gb|ABQU01000075.1| GENE 6 7142 - 8161 931 339 aa, chain + ## HITS:1 COG:Cj1243 KEGG:ns NR:ns ## COG: Cj1243 COG0407 # Protein_GI_number: 15792567 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III decarboxylase # Organism: Campylobacter jejuni # 1 339 1 340 340 470 64.0 1e-132 MLFVDACFGKKTPYTPVWFMRQAGRYLQEYREVRAQAGDFLSLCKNPKLASEVTLQPVDI LDVDAAILFSDILVVPMEMGMELGFFAGEGPKFAKRIETQNDLKGLREDSHKSLQYVYDT ISLTREKLHKDKALIGFCGAPWTLATYMVEGEGSKTYQQTKKILYSNPAFLHSLLELIAH NLENYLEEQIKAGVNAVMIFDSWAAALEEEAYLEFGFAYCKKIASKIKAKYPHIPVILFP KGISGYLDRIDGEFDVFGVDWSTPLRIAKEKLGKKYVLQGNLEPCRIYDEDSMIKGAKEI LDLMQGERHIFNLGHGMLPDLPRENAIKLVKFIHDYSSK >gi|197282975|gb|ABQU01000075.1| GENE 7 8398 - 10575 2519 725 aa, chain + ## HITS:1 COG:Cj0917c KEGG:ns NR:ns ## COG: Cj0917c COG1966 # Protein_GI_number: 15792246 # Func_class: T Signal transduction mechanisms # Function: Carbon starvation protein, predicted membrane protein # Organism: Campylobacter jejuni # 1 717 1 700 703 788 63.0 0 MNKWLIHLLWIVVAFIGAYCFGVLALHTGESISAIWIVVAAVCIYAIAYRYYSKYIAYKV LGLDDNRATPAVANNDGHDFVPTNKIVLFGHHFAAIAGAGPLVGPILAAQMGYLPSMIWI VVGVVLAGAVHDFTVLFISMRRDGKSLGEIIKLELGKGVGSIAMLGILGIMMLIIAILAL VVVNALAESPWGLFTIAMTIPIAIYMGIHMRFLRPGKIGEASIIGFVLLILALYYGRAVA ESETLAPLFTLSPVTLTYVMIGYGFVAAILPVWFLLAPRDYLSTFLKIGVIVLMAAGILI VAPDVQFESVTKFIDGSGPVFSGKLFPFLFITIACGAISGFHALISSGTTPKMLERESHA QMVGYGSMLMESAVAIMALIAAVILTPGLYFSVNVAPAALGTAAFYEGGVLKDAIGAAQA AAQTISSWGFIITPEQILNTANEIGENSILSKTGGAPTFAIGLATIISQVPLFSQGSIAF WYHFAILFEALFILTAVDAGTRAGRFMVQDVLGNVYKPFGNIHSIFYGILATLLCVIGWG YILYQGVTDPQGGVKSLWTLFGVSNQMLAGMALLTVIVVLFKMGKAKQAWIAIVPAIWVL VSTLYAGILKLLPANGDKLHDAVSHIALWQNNKAAAASKLAEAAAQTDPQIIANLTAQAE KLSLIASNNLLNAILCGFFMFVTFLILVQCVRICLKCVNGEPTIPLAETPYVKASDFDSK VAVNQ >gi|197282975|gb|ABQU01000075.1| GENE 8 10572 - 10778 113 68 aa, chain + ## HITS:1 COG:Cj0916c KEGG:ns NR:ns ## COG: Cj0916c COG2879 # Protein_GI_number: 15792245 # Func_class: S Function unknown # Function: Uncharacterized small protein # Organism: Campylobacter jejuni # 7 64 3 60 65 62 51.0 2e-10 MIFSKFWREVRRIYQRSDRFLHLLVGMPSYDKYLEHMHKNHPDKIPKSQKEFFKEAMESK YGAGRTKC >gi|197282975|gb|ABQU01000075.1| GENE 9 10823 - 12082 1305 419 aa, chain - ## HITS:1 COG:aq_699 KEGG:ns NR:ns ## COG: aq_699 COG1538 # Protein_GI_number: 15606101 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Aquifex aeolicus # 120 391 141 407 437 80 26.0 8e-15 MLRKYFITLSLTLGFGYTLSLQEAINLTLNANHTIKEQEFLLQESQYIQKTYQSPFYPSL NAVYSTDRTNRISSQRSKKTSGNIGANIQYNLFNGMSDYFNLASYKSLTKAQEHQLQSTK EDIILLVKTAYINILRQKQNVIVAEQSKALLEEQRRESAEFYKVGLIPKNDLLEVEVNLN NAIQSLLSAKSNLAYYIRNLERYTRTKISAENLIELALHRPLLEEQKLRTLMHQKRSELL YLDSIIKSKEYLIQSAKGNFLPNVDIIGDYTYYGEDYKLSKRANSYSDETTLTLQVNLNL FNGFSDKYTLESTKVNKLSFESQRIDLIEELDLQLFEALETYNLSLNAYKVALTALNQAE ENYRISQNRYKERIQSTSDFLDAEYLLTQARSNVVLNRYAILQALAEIERITQTQQVNY >gi|197282975|gb|ABQU01000075.1| GENE 10 12072 - 15197 3010 1041 aa, chain - ## HITS:1 COG:SMc01457 KEGG:ns NR:ns ## COG: SMc01457 COG0841 # Protein_GI_number: 15965893 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Sinorhizobium meliloti # 5 1026 24 1012 1044 347 26.0 7e-95 MIEKLINRPVVIIVGMILVTLFGILSLLSMPYQLTPKVTRPVISISTTWDGATPYEIERE IIERQEQVLKGIDNLISLESRSRNNRGNITLEFNIGTNLTEALLDVSNKLDEVKGYPDDM DRPIIRATGDDTSPSVRMALVSDSKNVREYRTFFNEKVIQYFERIEGVAEVNFPSGDDRQ MHIILDYQKLAAYDLSIDTIINALERENINISAGTMNYGRKSYRVRTTAEYKTPQMVAET IIWSDGVKRVKIKDIAQVKEGFENKTTASTYNGQEALNIFIKPTADANVLELTDKVELVF QELNEGILKKEGLKLEWVNDQRGYITQAIDLVKGNIIVGAFLACGILFIFLRSLTSTLII AVSMPLSVFGTFIIMAGLDRTLNVVSLAGISFAVGMLVDSAIVVLENIDRHLKMKKSPIQ AVKDGTTEVIGGLIASVLTTVAIFIPIINMQEEAGQLFRDIALASSSAVGLSLFVSLIVI PTLSYQVHKITPNLKIKPIPIFSKISQKMVDLGNLCVQWIMYFVQLSMQSTKNKILTITS LTCISIAFSYFLFPKMEYLPQGNQNFVFSSLNPPPGLSYNERKKIGEEIFTCLSPYFASN GYNGSSTLPPIDNMFYLGSETAMQFGMRSTQDTRASELIPLAKECISKIPGITGNSSQQG IFERRGGQGRSIDVDVSGQDLEKIIVTALELQRIIFETFGNGVQISPRPSLEMLYPELNL YPNAERLKAVGLDAKSFGIAVDVLMDGRKISEYKEEGREKIDLILKAQESQITSPEELYF ASIYTPDGGILPISSLAIQKLEYGINEIRHLERDRTISLQVNPPKDITIQEAMEKIEGEI LEKLKSSGALGENKITLSGTADQLTKIRTALQGGFILAIFITYLLMAALYEDFIYPLIIL FTIPLAVGGGVLGLWLVDTLLTDQPLDVLTMLGFIILVGTVVNNAILIVYQSLHNIRLYG MDYHNAIINAVEVRIRPIYMSTLTSLFGMLPLVIAPGAGSEIYRGLGAVILGGLGLSTFL TIFLIPCLLSFFIKKEVKNAA >gi|197282975|gb|ABQU01000075.1| GENE 11 15203 - 16261 1247 352 aa, chain - ## HITS:1 COG:aq_1331 KEGG:ns NR:ns ## COG: aq_1331 COG0845 # Protein_GI_number: 15606534 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Aquifex aeolicus # 38 336 48 342 348 103 25.0 6e-22 MYRFLCLLFMPLLAFSQNPTLVVSQPIKSGILNQNHTYVGSLYFSERASLASEVSGVIDE IYVYEGDKVKQGQALAKLNDDLLTKEIKAKDSLLKQAKALLQKSTKDFERYKNLYQSDSI AYKEYEDALFDLQAQKGNTDSIAADLEYLKTQQKKKTLIAPYDGVILQRLLKQGEWVSSG ASIFNIAKLSPLEANIEVPFEILRSLEIGEVVQVVIANKNYPAKILALIPLGDAKARTFP IKLSIEDKKGELIEGLEVRANLNITKSKESLLVPRDSILPTQKGDCIFIIENNKAKQIFI KVNGYNGFDASITPLNSKLSSQDRVITQGHERLRDGQLITESTDSTNPKVLR >gi|197282975|gb|ABQU01000075.1| GENE 12 16395 - 18398 1377 667 aa, chain + ## HITS:1 COG:Cj1126c KEGG:ns NR:ns ## COG: Cj1126c COG1287 # Protein_GI_number: 15792451 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for N-linked glycosylation # Organism: Campylobacter jejuni # 11 666 19 712 713 272 32.0 2e-72 MQNKNWLLIAVFVYLIAILLRFYYPFVLGEFEEYFYHNVLLLNTNDGYFYAQGARDILAG VKSTFYSPTHEILSQISAFLALILPFSLEQIIFYMPGFFGSLIVFFVVFVSRDFGGIPSF LCGILSAISVSYYNRTMFGYYDTDMLVIVLAFGVGVVIVELMRKISFFGLVLLILLSGFG LVYYPSMRYIFVGYVGILAIFGIFDRNIRVVNGCLLSVLLGFLLFSTHFVFWLFLCFCGV MIKFIQRLDRRNFDFVYCLLLVIFCGILAFRVVPEIFASVYVAQDSKEIVGFGYASVMGT ISEVSKIDFWNFVYRISGNLLWFVLGSVGIILLFLKKREFWIFLPFLIMGFFGYFGGLRF TFYAVVVYALGIGYLLCFLLDIFKRKIKWAVLFGVVFVCGSVFPHLWHIKNYIIPPILEN SEAKALQEIPAKYGDYALAWWDYGYFVRYFARLNTFVDGGIHSGKQNYPISFVLSAKNQK QSYNMAKLTFNHIEFEDFAKSHQYSQSKALEALKGDIDCVGKRSEDLYIILPLRMVRIFS TIMQFSQPKGETNQGLLMVSKTKSKDKIIFQDNVFVDIKKGKVGILNQEISLNLAKMIDL KDSSKSLEFDKNSSLVVLMLGGGDYILCDKEYLETFYFRGMFLDNLDSNLFEKVLKNEKI AIYKLKQ >gi|197282975|gb|ABQU01000075.1| GENE 13 18409 - 18879 652 156 aa, chain + ## HITS:1 COG:Cj0252 KEGG:ns NR:ns ## COG: Cj0252 COG0315 # Protein_GI_number: 15791623 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Campylobacter jejuni # 1 156 1 156 157 166 60.0 1e-41 MQFTHLDEKKNPRMVDVSNKEMTNREAIAMGKITMSREAFLAVINENGKKGAVIQTAITA AIMGAKRTSELIPMCHLIYLASVKCEIQEIENENAFVLQVKAKSNGQTGVEMEALMGVNI GLLTIYDMVKAIDKRMVISEVCLLEKQGGKSGHFVR >gi|197282975|gb|ABQU01000075.1| GENE 14 18930 - 20882 1076 650 aa, chain - ## HITS:1 COG:VNG1732C_1 KEGG:ns NR:ns ## COG: VNG1732C_1 COG1357 # Protein_GI_number: 15790663 # Func_class: S Function unknown # Function: Uncharacterized low-complexity proteins # Organism: Halobacterium sp. NRC-1 # 145 291 148 304 489 68 29.0 3e-11 MPDSQDTAKQFSANIDKAQAEIWHTLFPYLPATPENLAQIQPRRTATKRYIPNEEIPPIL EFDITPNRHLVLNTLRLWRLAQYHLHFTNIPNITINQMYLDIGNDIQDNRYERKTLGKFT FRGCAFTEITMGLCDFEELHFYNCIFKGKVDFADCHFQKLEFQNCVSESSITFDRAIFEN KAFFIHSTFKDSASFRHSQYMQGANFSQSIFMQKIDCTEVRFQDFANFTHTTFNDYADFS QCEFEKTANFYGAKFEKAPNFSQVQFKGSLNAVNMDLDFGFTNLKECIISEFKKYNNIAP QKQGCFQKIKQRISTKLKKEQANDKKPTITKPLTHFANDFRDSFRIFKNALIKENNNLDA SEFHKLELYCKEIELGESIHAGGVQAQSEEDVRKNTKPFKESIDWFLLRFYRKLSEHHTD LLRVLNNLVLLIALYAGFVYIGNFKIDDAKTSSISQQLFQHIEAFQNYIKNLSVVQEYSL VLIILLILFVAFAIYLVFKLKLLIHIKTTFKIILAGIMKDFWLLLKILSVILSIFCIITF IVLQFETNNRPSILVNIFGFCLFIILYLWLVCLDSIFLRYIVVIAAYIVASVALGDNIAI LNPLLGKLISDKEPINDPLFTAITLAYTILTLLVLFSLQKTARKNSIVPS >gi|197282975|gb|ABQU01000075.1| GENE 15 20928 - 23390 1509 820 aa, chain - ## HITS:1 COG:no KEGG:Mbur_1921 NR:ns ## KEGG: Mbur_1921 # Name: not_defined # Def: toll-interleukin receptor # Organism: M.burtonii # Pathway: not_defined # 5 676 9 711 851 199 27.0 5e-49 MIKKIFYSYSHKDKAYLEKLQTHIKPIIKEYKIKEFVDEHIRGGEVLDEKIMTNIQESDL VISLISPDYLASEYCQKEMKIAIDAHKSFPIIARTCDWKNTSLRDIKVMPQDGKPIIDYD NDDKAYQYIAQELRKKIQDSLQIIICNEGFSKYLEKIDFLHPNKAKITLADTFVYPNICS SKDEQITIKEILENEKYKEILFFSPFYSGKTTLLKYMYSLLLQQDIYPLYIQGKRIVKTK YFEEEIRKCFEEQYNGDFDTWKNSQITYILIDDYHHSINDNFIDFLRNNYNNNNNIKIIV TIEQEEYFSFFKDFPQFSTFDRFELRPFGREQQEEIIKKWLLLKDNNVPIDFYNKVDITE KHINEIVSSQIILPRYPTNILLILQAIDSKNNDMQITSYGYCYFALILNYLTKNGITQES GIDSSINFLSELSYNIFNCKETYTQQHYKNFKKEYKDKFVIQDSILNRLESGDYPILHID KDSGCVKFEQDFIYYYFLGKILSEKISKEDIELFCENIHQKIYMYIIVFIIHHSKNIELI EDIILRCMLVLDKTQEASYLFDETHNFITKLDIPKMIMNAKSVEENRAMERKMQDNHTDI EDTDNEISDNEVYKGMKLSEVLSQILKNRSGSFEKSRIKEILDALISIRLRINKMIFELC EDKDFEKFITQSLKEFFKHKNQKISDEKAQKFVKRLVNIASIGSSLGIVNDTSFLIYTDN IIEDLENLIETDKKPSREIILFLTSIKEGLREKHFKQLEKMIQEYKNKKYFFAVQILSYS LQHYLNTHSTDNRLELKICKLLELPTVNRAADILLLQHKK >gi|197282975|gb|ABQU01000075.1| GENE 16 23596 - 25776 1793 726 aa, chain - ## HITS:1 COG:RSc2619 KEGG:ns NR:ns ## COG: RSc2619 COG4694 # Protein_GI_number: 17547338 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 27 722 29 758 767 108 21.0 6e-23 MIKKIYKIHYKSFCDSDTSNIDLKQINLIWGYNGQGKSSLVQFIKENIEAENRNEIFECK ENIKLFVYDELYKRNTLYINEDSNKGFRSFYGGENIREIIKDKKIILDKIKKVEDRINIK TQKIDEQNNRIDTLKTKIAKETREVLEKIDPKKYKTPQSYTKAHIQDESFENSTTLTTQN LATKEKQTIDNAPKAITYFTFDTIKKIEQGKIQLSEMLKQTPQNQAIERFKQDKELENIA KLAIEIKNKNSYYNEKCPLCEQNIATIKLWENLEKHFNKEYESFIERLKKAKEYFDKTNT EINNFKAWLNNNIIQTKLYTKQNDDNIDELRQKYLIASENLQKDIDTITKAINKKSESPN TSDIELNLSENFSDSLSTILSDELKTMIDYHNKEQNNYTQIIENNIAEIKQHFIAKEKET FDKISKERKLLKKHKDRLETIKKRLANKNQELDEQLKKIDESFTILNGDLHEWFFKEIRF EKIGDSHYKTQRLNHKKEWIDCKSGLSEGEKTIISIIYFINFYLSSLENLQECPIVIIDD PITSLDSQNKDKIKNYIFNKVFNQPRGQIFLLSHDKPFIYKMNKSINSNNVAKEKSIFTI TKRELTSSIDSIKDFEFKLENEIKEIYKKLQSLLESDNIDYILIKSLARELLEALFAIKY ENIDNFTQCYDKILQDYNITKRYAADDIQDMNHNKHSTNNDEIKNKIKFVLEMVDKIIKP DYANSK >gi|197282975|gb|ABQU01000075.1| GENE 17 25769 - 29704 2013 1311 aa, chain - ## HITS:1 COG:jhp1409 KEGG:ns NR:ns ## COG: jhp1409 COG1002 # Protein_GI_number: 15612474 # Func_class: V Defense mechanisms # Function: Type II restriction enzyme, methylase subunits # Organism: Helicobacter pylori J99 # 3 1307 109 1249 1252 636 38.0 0 MHECILYYLRERDENLLTPNTSLTYIIITDFYQFYIFKSSEFKRLFESKQIKNLYKNFTE KKGLFHTSKSTKNEDLYAELKKILSSVGFLDSVRDSSKQPNNSPHTNPLNANPPQANPSH TNLSQENQPQANIEGYYFDLRNFDSLKPKDKAHIATLLSPEFLHDERTLDPNAISEPFYR ELLHILGLTEKEQRKIAIDESQENSFAKHIFYKLEQKIPKDSLLDSMMNLIIIWLNRILF LKLIESKLLEFNDNDTKLCFLTSHKIKDFATLEHLFFEVLAKNYDERQNVIDRGFHYLPY LNSSLFSKDEIETRLLSIGTLDSSLQIAYYPHTILQDREGKAKTGKTTFLAYLFDFLNSY AFGLESSKRDSMRDDSIINDSTNTDSTNTDFGIDTQSHSTNPQTTESTIYKAQSHADSQT TIYHTHTSQTNTSHYTSKTIIKSSVLGSVFERLNGYKEGSFYTPSFITNYMCKEAIDKAV VEKFNTQYGFKATNLAELQEDIKDSIRSQRDKTQKESTRQEFKKTLLSLTLCDPSVGSGH FLVSALNYLVFIHWYLKLALQGYEENSKQHSYDIEDLQIIDDEIILLDSSYSSISYTRPK ALNKAHRIQKELFTLKKEIIESCLFGVDINPISCHIAQLRLWIELLKSTYYTDIESNSTT QGKLDSTTHRLETLPNIDINIKEGNSLVSYFDITQDLKHYPNIKVRIEEYKKAVKNYKEG LYVSKQDIDRKIKELHIAFKNFCFQDKFKSQIQTFQKECDKYSEKYGNHLAKDDTNLAIY VRAGFSFFDFDESEAQKDFKKLQDSYNALFNLESNKPFEWRFAFPEVLDSNGDFVGFDLI IGNPPYIRQEAIKELKPHLQKAFSIYKGTSDIYTYFFELGHNLLRENGILSFITSNKYTR AGYGEALRAFLLQKTQLLFYMDFNGVKVFDSATVDTAITSFVKAQGTQPNSFTHYRFIHF DKGKSIEENIATQNATADTIPQSACKEDQAFPPDMKTQSLKRKIESIGTPLKDWDISINY GIKTGYNEAFIIDSNKREEILGACDDTKASVDSNGLNERERTEALIKPILRGRDIKRYSY EWAGLWVILAKFDSHKYLEKDYPAIYNHLSQYKDKLQARGQCRYARGKESTNKGYPGQHH WLELDNNPKDSYLEEFAKPRVLQNVDSLSYQGKIVWNRISSELCFSYDNRGCFILDSMFM INAANETFVRYLLGVLNSNISRHWIRQNAATLGEGIYGAKIYIEKLPIPKITESNQTLCD EIIALVDKILESKAKDSTTDTKELEYKIDKLVYKLYNLTDKEVQIIKGNND >gi|197282975|gb|ABQU01000075.1| GENE 18 29691 - 29942 78 83 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHSCKARQFIFSGLNISSLLLGFFASMITSTLLFFNRAKSISLLPFCLCAARTSSPRDCK NGAKTLATMAGSFWFCRFWRCER >gi|197282975|gb|ABQU01000075.1| GENE 19 30075 - 30440 538 121 aa, chain - ## HITS:1 COG:HP1025 KEGG:ns NR:ns ## COG: HP1025 COG0789 # Protein_GI_number: 15645639 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Helicobacter pylori 26695 # 1 121 1 123 123 150 69.0 6e-37 MYSYDEPVYLISVVAKILSIHPQTLRQYEREGLIEPGRTDGKMRLYSQRDIDKIKTILRL TRDLGVNLAGVDIILRLKDRLDEQDQEIESLQIQLEKLKSNQPNKSVIRKQSSYEVIIFK K >gi|197282975|gb|ABQU01000075.1| GENE 20 30454 - 31326 1036 290 aa, chain - ## HITS:1 COG:HP1024 KEGG:ns NR:ns ## COG: HP1024 COG2214 # Protein_GI_number: 15645638 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone # Organism: Helicobacter pylori 26695 # 1 290 1 288 288 307 56.0 1e-83 MSKSLYETLEVSPNATSDEIKKSYRRLARKYHPDINKEKDAEEKFKEINAAYEILSDEQK RKQYDQFGDSMFGGQNFHDFARGQGNVNLDDILSQIFGGGGFSQGTGGFGGFESFGGFGG FGGRSQPNLDINAQITIPFSTAILGGKHNINLQNQNFDIKIPAGIRDGETIRLRGKGKTM GNQSGDVLLKVSVAPHPQYSQDGDNLTKKFDLPLKTALFGGKVEIETLYKTITLKVPKNT KNNQRFRVKELGAYNRKSKTNGDLYLEANIILPDVDSLPKELTKALEKYL >gi|197282975|gb|ABQU01000075.1| GENE 21 31388 - 34222 2231 944 aa, chain + ## HITS:1 COG:jhp1446 KEGG:ns NR:ns ## COG: jhp1446 COG1074 # Protein_GI_number: 15612511 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Helicobacter pylori J99 # 24 915 1 918 946 328 32.0 2e-89 MSINFWLFYFNAIITNKIQGKMFMDSALLCLNASAGSGKTYRLVLRYLELLFLGAKPSEI LTLTFTKKAAKEMEERIAKSIGEIYQYRNDIDYINKLECISIKDKNDFGKLQEKIHQIYH SFLKEDLKITTIDSFFQRILKSFCWYVGVEYDFEIQSDDREKIIEIFLTNLDNQQLQGIL NLCIQRQLRIDSVISFCDFLDSLKEMLEKELFIYPTKEGYKQQAMEYARRIQATYQDAKG EIHSALEFDDIESLLQKGKTWLTKERLQDYRGFSKIPFRDEDFMGLKEALVGVFVEDEAK YLENLYGIFVLYLKAKQEYYKQTNTLSFNAVTSKVYELLLQKQIDKNFLYFRLDSTISHI LIDEFQDTSVLQYEILKPMIDEIKSGEGAKRFLRSFFYVGDIKQSIYRFRGGNSELFKIA AQGMQEESLKINYRSAKNIVEFVNETFSNKIEGFVPQESNSKIKGFVQVYIQEKEAILSQ VTTSIRELLEIGAKEEEIAILTFDNDCVVEIAEFLQEEGFKVVVDTSAKLIFHNEVRALI EFLKYLVFENPKFCAEFFMLLGLEKENLEQYFYLKTQKPSKVLLEIMQRYKIASLSAKKF LEYSLEYLSIEELLEKVESLQSDIVSSDFFGIRIMTIHKSKGLEFNNVLVIDDIRAKNRS GNVFFEFKENGVEIKRIFWRSNELRMQIDKEYQKALLKENILKEKDLKNQLYVALTRAKN TMQIILLDQKSRFESLGLQLMQKGELKQAILEIKSANLEDSLTQNKDFECFAHNQKSLES LGRQKQMQIAQKEDLIGEVGAIYYGIALHFVMEQKIKNQLEDSLILTLLLNKMGFYIEKK ILEKIINHCKILLNHSSFIEIMGKGKVKCEVPFLINGRQKRLDLLIIGDNEAFVIDYKSG MQREIYKMQVLEYMQSVNLILQKPTYGFIFYTEGEGKLVEVIGD >gi|197282975|gb|ABQU01000075.1| GENE 22 34223 - 35551 1293 442 aa, chain + ## HITS:1 COG:jhp1447 KEGG:ns NR:ns ## COG: jhp1447 COG3004 # Protein_GI_number: 15612512 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter # Organism: Helicobacter pylori J99 # 4 437 5 432 438 457 58.0 1e-128 METKSQNSLIAFFSKITKSESFAGILLLCCAVLAMIVANSPWGDSYAALWKTKFGFDVNG VFIGMSLEHWINDVLMAFFFLVVGLEIKREVLFGELAGFKRAALPIIAALGGMIGPGIIY FTLNAGTPSEHGFGIPMATDIAFALGVLSALGKRVSISVKVFLVSLAVADDLGAIIVIAL FYSSGISFEWLAVAVGIVAVLVVLNKAGIKALTPYMILGVLLWIAVHNCGVHATIAAVVL AFTIPVAPKIDTLTFMEKIKTMIKDFQESEKQKDGILLQSEQVEALYHIAKHKNAVQNPL LRLEHALAPYSNYLIMPIFAFANAGVSIGSNIDFGIDHVFLGIFFGLVVGKPLGIFTFTF LAEKLGIAARPKGATWVEIFGAGALGGIGFTMSMFVTNLAFSGEHALVATDVAKISILIA SLSAGILGSIFFFVRDKVTHHY >gi|197282975|gb|ABQU01000075.1| GENE 23 36323 - 36637 347 104 aa, chain + ## HITS:1 COG:Cj1094c KEGG:ns NR:ns ## COG: Cj1094c COG1862 # Protein_GI_number: 15792419 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Campylobacter jejuni # 21 104 5 89 90 101 60.0 3e-22 MVESHLNFILERLALMENAGNIFTQLLPLIVLIAIFYFLIIRPQQKQAKNHREMIASLDK GDKIVTSGGFIVEVVKREEDYFMVRLNDDTIVKLAKDYVAKKAE >gi|197282975|gb|ABQU01000075.1| GENE 24 36643 - 38220 1978 525 aa, chain + ## HITS:1 COG:jhp1449 KEGG:ns NR:ns ## COG: jhp1449 COG0342 # Protein_GI_number: 15612514 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecD # Organism: Helicobacter pylori J99 # 3 524 2 525 526 568 60.0 1e-161 MKKSFNSKLFFFIIAALFGIALSIPSIFQTQGPKITLGLDLQGGLNLLLGVKTEEAIKTR YSSLASGINFYALEEQILLDGLSAQEDSVSFELLDSNEKTKIDNYLKEIQGLNVSENNLK YTITFTEVEIINIENYAIEQAIGNIRNRLDQFGLSEPSVTKQGEDSILVQLPGIKTQEEE QRALELISKGGHLQMMAVDEARNARVNTMTPLEAESYGDVILPFVNNPNQKILLKAIPIL DGAMLTDARAAYDQNGQPIINFTLNAQGGKIFGDFSGKNVGNRMAVVLDGKVYSAPVIRE RIGGGSGQISGGFSVQEASDIAIALRSGALPAPITLLEKRSVGPSLGADSIKASMIALIS GAVLVIAFMIFYYGIAGIIANLAMVVNILLVIAVMALFSATLTLPGMAGIILTVGMAVDA NVIINERIREGFRAGENFIKSMENGYANASRAIFDSNLTSLIAAVLLYMCGTGAIKGFAI TMSIGIVASVITAIVGTHGIFRMLQNRIIKSGNYALWFGYKERKV >gi|197282975|gb|ABQU01000075.1| GENE 25 38220 - 39191 1179 323 aa, chain + ## HITS:1 COG:jhp1450 KEGG:ns NR:ns ## COG: jhp1450 COG0341 # Protein_GI_number: 15612515 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecF # Organism: Helicobacter pylori J99 # 1 323 1 323 323 330 57.0 2e-90 MEFFRHNKIYDFVKWSNYGIILSAILFVGSLFLFFKPGFTLGVDFAGGTIVQIQYKEIAP LAQIREKLESVESYKGAQVSEFGSPQEILIRLSVATSNVNQNIGEEIAELLKDTGDLQIR RVDVVGPKVGNELKEKGILALTLALISIMVYVAYRYEWRFALASILALVHDVVIAAGAVI LFDVDLSLEVIAALLTLIGYSINDTIIIFDRIRETMSVKASNDLKAVVNEALSATLSRTM LTSLTVFFVVLTLYLFGGEIIKGFSLPMLVGSIVGSYSSIFVASKLVMLLGFDLKKYHQK LVENERKALEKKKMREMYERGRL >gi|197282975|gb|ABQU01000075.1| GENE 26 39201 - 39542 324 113 aa, chain + ## HITS:1 COG:no KEGG:Suden_1573 NR:ns ## KEGG: Suden_1573 # Name: not_defined # Def: hypothetical protein # Organism: T.denitrificans_ATCC33889 # Pathway: not_defined # 1 112 1 112 112 120 63.0 1e-26 MDWGKVIYIFFVLMSLTSTIGFLWEQNIVMLFIAGGVNIISTILKIGVRNYMSAELMAAS LVADLHLIPAFIYMQVLNNANVAVALALGALVANIVSIIFLAIESIKKYDDFN >gi|197282975|gb|ABQU01000075.1| GENE 27 39553 - 41991 2282 812 aa, chain + ## HITS:1 COG:HP1547 KEGG:ns NR:ns ## COG: HP1547 COG0495 # Protein_GI_number: 15646154 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Helicobacter pylori 26695 # 8 810 6 805 806 1061 63.0 0 MEYNAKVIEKKWQEFWEKTNAYEPKEDKNLPKKYILSMFPYPSGNIHMGHVRNYCISDAI ARNYRKQGFNVLHPIGWDAFGMPAENAAIKNKTHPKQWTYANIENMKNQLYSLGFSFSKT RELATCDLEYSKWEQSLFIDMWEKGLIYRKKGYLNWCPNDQTVLANEQVIEGKCWRCDTQ VVQKEMYQYYIKITDYAEELLRDLDTLEGKWPNQVLTMQRNWIGKSRGLSFSFALEKKCG EFDSLEVFTTRPDTIFGVSYCALAPEHSLVKTLIANNELSLNIKDEIEKMQNTSVRERSQ QEKRGVPLGIYAINPLNGEKIPLWVANFVLMDYGSGAVMSVPAHDERDYEFAKKYNLPLK QVIQKEGEETALPYCESGKIINSGKYDGLDSNIAKEKIIEYFEKNSLGKAVIQFKLRDWG VSRQRYWGTPIPLIHCEKCGILPENKDNLPVALPEDVVIDGEGNPLDKHSSWKHCTCPKC GNKALRETDTLDTFVESSWYFLRYTTPKELRDKMLLSPEDEKYWMGVDEYIGGIEHAILH LLYSRFFTKVLRDLGYTKISEPFLHLLTQGMVTKDGAKMSKSKGNVVDPQEIIEQYGADT ARLFILFAAPPVRELEWNDSALEGAFRFIKRLSAKIENASKMESLPQIDTKGLSKAEKYA RKKVYEALKKSNETFIHENGFAFNTLIAACMEALNALSEQENQAVWSEGYFILLHILEPI IPHICWELSEQYFGLENFKFISIDNDALKEDSITLAITINGKRRDEIETSLDASKEEILS LAKEKVAKWLEGKNITKEIVVPNKLVNFVVQG >gi|197282975|gb|ABQU01000075.1| GENE 28 41991 - 42491 461 166 aa, chain + ## HITS:1 COG:no KEGG:WS1244 NR:ns ## KEGG: WS1244 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 12 164 9 160 167 136 43.0 3e-31 MKNFLYALVACLFFVGCGYQPIAHQANKAFGGKIFVEVKISLRDPQNSITLKDEIFKSIF ERLHARVVDKKEATSIIEVELQSVSFNSLAENTTGFATFYRCEAVVKFKYINQITQSTRI FTKKGYYNFSLGTSSIITDSARIEAIDEAVIQALDGFISQVGIETF >gi|197282975|gb|ABQU01000075.1| GENE 29 42491 - 43642 1061 383 aa, chain + ## HITS:1 COG:no KEGG:WS1243 NR:ns ## KEGG: WS1243 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 229 367 320 458 480 78 32.0 5e-13 MQSIQNIAREALKQLLREGKSPTPDAYAEAFYNYARKKGIKIGEENSALKSMLSVLDEEI KDTLLSQEFKNKDEWIIYLVRMLNQFYFYKKNFTTQLEILRILLRLLANCPQKEISSLAK GQLLELDNSNLQNMQIWKERWNEQVRKTPEIVGKEGEVLAMMSEFQIDNLDFKEWQCELK EYLKEQKIPAQTPKIMSKLEEVLKKNLNANTQNNHQNTLQYHSSDALPLDSMTTLISKEG MQKVLEFAEEEYQKSHKSYSIIVFGIVSYHKIVESFGSEAAKRILATLGRLLKEYSTQSD LIAYYSKEEFLACLLDRSKEEAIDFIQTLSEIVKKSIFMYQKTRIHIELSAQISYREDEE SMQKMLETTLKSFQNNKDNKGIL >gi|197282975|gb|ABQU01000075.1| GENE 30 43639 - 44775 1012 378 aa, chain + ## HITS:1 COG:HP1545 KEGG:ns NR:ns ## COG: HP1545 COG0285 # Protein_GI_number: 15646152 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Helicobacter pylori 26695 # 1 375 9 388 394 275 42.0 2e-73 MNALMEFLDKKGQEYAPFEPKRAPEILALLNLTLPKKLKVIHIIGTNGKGSTGRFLALML YQKGFNVGHFTSPHLLNFNERFWLNGKNLADEILQKAFLELDSALLKEASYFEVLTFLAF RVFGDCDYLVLEAGLGGEFDSTTTCFKRDLTLFTHIGIDHQEFLGETIEEIATTKLNAMS KKAILGIQSDLTIVMLAKKIAQEKQVNLQILEKQDILSSIKEYCKKHAYPKYQEENLTLA YFGLKALGLDMALESLAKLDLMGRMQKISHNIWLDVLHNPSGARAILQNFSKEKYVLVYN SYFDKNPKEILSILKPIIKRIEIMEVDNPRIIPKEELKNILRELRVEFSDFVSIKDDEKY LVCGSFSVVSEFCKRSKI >gi|197282975|gb|ABQU01000075.1| GENE 31 44772 - 45701 1124 309 aa, chain + ## HITS:1 COG:jhp1456 KEGG:ns NR:ns ## COG: jhp1456 COG0739 # Protein_GI_number: 15612521 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Helicobacter pylori J99 # 1 296 3 299 312 297 47.0 2e-80 MKNRFVVTITDINGSKQYNIHQYVKQIILYVILFVVVIFFFSAISIQLLLKEVKQIETKR DLMQQEFLKINEKNEQLQALIDEKTEELVKVSDKIEDLEGIVGIDKQVYEQDLSLMERVD LASITGAQKAFVMQLIPNGAPIRGEYRITASWGSRLHPILRRTHSHTGIDFGMPIGTPIY APADGVADFTSTGYNGGYGIMVKLEHSFGFKTFYAHLSKIVVKRGDFVRRGQLIAYSGNS GRSTGPHLHYEIRYLGRDLNPKPFIEWTMRDYTQIFEKEKNIKWQSLLTMINKLSEIRET PVLSRREQE >gi|197282975|gb|ABQU01000075.1| GENE 32 45620 - 46063 553 147 aa, chain + ## HITS:1 COG:jhp1457 KEGG:ns NR:ns ## COG: jhp1457 COG1664 # Protein_GI_number: 15612522 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Integral membrane protein CcmA involved in cell shape determination # Organism: Helicobacter pylori J99 # 1 114 1 114 136 97 44.0 8e-21 MAIFTNNDKQTIGNSGNTSIISQGTRIKGDIVSECNLHIDGSLEGSIIAKSNVVIGKSGN VNGSINAEHLVVSGKLMGNCECSIVEILPQGRIEGEVRARELIIEKTAEFVGHSITHKDN EIKHSFDKSKNIPSNTPKKVENVGDTK >gi|197282975|gb|ABQU01000075.1| GENE 33 46050 - 49076 3116 1008 aa, chain + ## HITS:1 COG:jhp1458 KEGG:ns NR:ns ## COG: jhp1458 COG1197 # Protein_GI_number: 15612523 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Helicobacter pylori J99 # 1 1005 1 994 1001 942 50.0 0 MIQSSFYEFFKTHLRDFQEKYQNGLICLTKDKNDAQKLADVASFLGIQSFVLEDLRAVFG EDLRSYQEELREILNTLKNFYTTNSPKILFSPLQTLLNPMPKLEALEGFSIAFGESLELR EFQETLLHFGYEFVELVEMSGEVSIRGDIIDLFLPNYENPIRLSLFCNEIESIRFFDVQT QLCFQEEIEKLEILPAFFNLSAKSYEELLSKIQEANIENSLHYQGNLIAAYGLWFLEEKQ NLLEIYPYLKAPNIQDLLDELLSFQEQNKELLKQILEHKSIEVSQNYEDFECAFRNIPTF LEFHKNKKITIIAKTESLIRQAGISLGEHKEYQLVLGKDYGIWILGKDELILSLNTKTKQ KKKFANKILIDELKVGDYVVHIDYGVALFNGIVQANIFGATRDFIELKYLGEDKLLLPVE NLDRIDRYIADGGIPILDKLGKGSFARLKEKVKEKLFVIANGIIALAAKRELIDGIVLDT NKEEILIFQNQSGFIYTKDQSKAIEEIFKDLSSGRVMDRLLSGDVGFGKTEVAMNAMFVS YLSGYQSAIITPTTLLAYQHYLTIKSRFESFGIKIARLDRYIGTKEKKAILEGLKDGTIH AVVGTHALLNVSFKNLALIVIDEEHKFGVKQKERIKEIAQNTHLLSMSATPIPRTLNMAL SHIKGLSELKEAPSQRLPTRTFVKEYSDSLLKEVILRELRRGGQVFYIHNNISTINQKKE EILTILPHLKIAILHSQIQAQESENIIMEFAKGNFNLLLCTSIVESGIHLPNANTILVGR SDCFGIADLHQLRGRVGRGSKEGFCYFLIEDSSSITQEAQKRLLALEKNAYLGSGGALAY HDLEIRGGGNLLGEAQSGHIKNIGYSLYLRMLEEAIYQLSGNIKEEKANIDVKLSVTAFL NPELIASEKLRLEIYRRLSRCEEESAVYGIESEIEERFGALDIYTKQFIALIVIKIKARK QGIINILNYQQNITFVDTKGEKTTIAAKSKDEEDILESVMKYLESLKG >gi|197282975|gb|ABQU01000075.1| GENE 34 49078 - 49899 810 273 aa, chain + ## HITS:1 COG:BS_ymdB KEGG:ns NR:ns ## COG: BS_ymdB COG1692 # Protein_GI_number: 16078760 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 232 1 231 264 186 43.0 6e-47 MRFGFIGDIVGKVGRNLVKDYIQEVKRTYKLDCIIANGENASHGFGLSVSTFLELQSYGV DIFTGGNHIWDKKDIFPFLSQEDSVILRPHNYPQGVMGSGIYRKEIEGESFAVLNLMGHF GMPQCDNAFICAKEAVESLHNQGIKNIIIDFHAEATSEKRAMFMMLKGKIGAILGTHTHI GTDDLEIFEGTFGVSDVGMSGARESVIGMEIDEPIQRFLNGLPNRLRIPEGKGIPTIFQM IVFELKNGKCTEAFKLKAVDGGSLQETLRAYSK >gi|197282975|gb|ABQU01000075.1| GENE 35 49908 - 51776 1488 622 aa, chain + ## HITS:1 COG:jhp0985 KEGG:ns NR:ns ## COG: jhp0985 COG0043 # Protein_GI_number: 15612050 # Func_class: H Coenzyme transport and metabolism # Function: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases # Organism: Helicobacter pylori J99 # 1 614 1 611 616 703 58.0 0 MRQTLDLLKAHNELKIITEPLDIELEIPHLAYLEVKKPDSKALLFTNPTRGNTSFEIPVL MNLFGNFKRVELLIGNTQEIAKEIAFMLKLKPPKNFQEALKFLPRLLNLRHLSPKILNTR GLCQEVIKTNNEINLTSLPILKTWSDDGGAFITMGQCYTQSLDGSVKNLGMYRLQVYDRN HLGLHWQIHKDSVGIFEEYKKAKQKMPVSIAIGGDPLYTWCATAPLPYGMFELMLYGFIK KRKAKMVKCVSNPLFVPYDSDIVIEGYVDTEVLRDEGRFGDHTGFYTPIEPYPVLEVSAI THKQNPIYLATVVGKPPLEDKYLGYPTERIFLPLLQTTTPSLVDYYMPENGVFHNLILAK IKARFPSQAKQSMHSFWGVGQMSFVKHAIFVGEDSPSLHTSEIIPYILNRFSVKNCLFSE GVCDALDHSSPNFAEGGKLGIDCTGNEVENPPLEILDNQDLLDNLSSIIPLSKTLRQYFL DTKNPITLLGVQKDSHSLQKFLKKSAFANLQKHLRILILLDDSKNDLENLYMILWRVVNN IDSKRDIRILGEIVVIDATDKNADDGYHREWPKETDCDSKTLESLAQKGLLSDFSQESLE EFYRKYHIDKSYSTLLDSNQSS Prediction of potential genes in microbial genomes Time: Tue May 24 02:49:48 2011 Seq name: gi|197282974|gb|ABQU01000076.1| Helicobacter pullorum MIT 98-5489 cont2.76, whole genome shotgun sequence Length of sequence - 2284 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 2282 2422 ## gi|242309316|ref|ZP_04808471.1| predicted protein Predicted protein(s) >gi|197282974|gb|ABQU01000076.1| GENE 1 2 - 2282 2422 760 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309316|ref|ZP_04808471.1| ## NR: gi|242309316|ref|ZP_04808471.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 42 760 1 719 720 873 100.0 0 NPNKIQTDKIQDSKASKDSIKLESNSPKLKDSKVSKTSKDSMKLESSPKLDSKTRQKSNK ESESKQPKKIQKSKSTRDSKKPAKSKNSSKLKSFIRTIPISIALASALSSQAVANWQQIG LGNIVDSNGTIANNVNMGGGKVIYLDNDQGSLDLTIMGNITSSSSAVGSDNGSIEIRNKS IAGTITNNGIFTASGDQRKVIHLYGGSTLKAFVNNNVVRQQSIRSMIYLKGGSTIQNIIN NGTMIQSGGNAGWASVIYIENNGTNVVNNVVFGNGSTTSNTQSGPRNIINIGGNRGTIGN ITANGNAKLNGNFAFGAGTITNGITFNGTSAMTGNISSSGRIGSIVLNDSSTIKGNISLT GSANIVNGISLLDSASITNGISLADSSRISKILIDGSNSSGTNGTPKLAGNITVGSAKGN TASIGNITISNGGTYAGTIHTRNQTSIDGITITNGGVVGSNTANSTIISSGNSTIHNIDI QNGGTMYGNIEAQWIPDGNANNEEDQNGVFRDGNIGNVSIVGRLQGDIVVNHKATMNSLT MSDYGTITGNIIIGELGSNGQYPTLSTIRLEGNSGINAITLGGAAAYANIGSLTLEGASS IGTITNNSNGTISNIALNGTSTITNGITNASGGTISNITLASSNTINNGITNNSGGNIGT ITSNLDNINNIITNEGTINELVVSKGTITYIDTNNSGVVDSLLQVENGATLKMGANGDGM ITIGSDLGSVLDLKQGSIFEGNLRNASAIKKWDNLSNIQG Prediction of potential genes in microbial genomes Time: Tue May 24 02:50:22 2011 Seq name: gi|197282973|gb|ABQU01000077.1| Helicobacter pullorum MIT 98-5489 cont2.77, whole genome shotgun sequence Length of sequence - 12459 bp Number of predicted genes - 19, with homology - 17 Number of transcription units - 9, operones - 3 average op.length - 4.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 183 135 ## gi|237749892|ref|ZP_04580372.1| conserved hypothetical protein 2 1 Op 2 . + CDS 183 - 914 675 ## gi|242308935|ref|ZP_04808090.1| predicted protein 3 1 Op 3 . + CDS 918 - 1346 386 ## gi|237749890|ref|ZP_04580370.1| predicted protein 4 1 Op 4 . + CDS 1436 - 1717 192 ## gi|242308937|ref|ZP_04808092.1| predicted protein 5 1 Op 5 . + CDS 1714 - 2418 729 ## HH0200 hypothetical protein - Term 2489 - 2528 -0.4 6 2 Tu 1 . - CDS 2668 - 3099 394 ## gi|242308940|ref|ZP_04808095.1| predicted protein - Prom 3219 - 3278 10.0 + Prom 3219 - 3278 6.5 7 3 Tu 1 . + CDS 3495 - 4268 540 ## gi|242308941|ref|ZP_04808096.1| predicted protein 8 4 Tu 1 . - CDS 4592 - 5152 384 ## gi|242308942|ref|ZP_04808097.1| conserved hypothetical protein - Prom 5175 - 5234 3.3 9 5 Op 1 . - CDS 5280 - 5633 274 ## gi|242308943|ref|ZP_04808098.1| predicted protein 10 5 Op 2 . - CDS 5648 - 5872 303 ## gi|242308944|ref|ZP_04808099.1| predicted protein 11 5 Op 3 . - CDS 5875 - 6783 921 ## SYN_01836 MreB-like ATPase involved in cell division - Prom 6817 - 6876 9.2 + Prom 6797 - 6856 9.6 12 6 Tu 1 . + CDS 7058 - 7186 186 ## + Term 7404 - 7445 2.4 - Term 7185 - 7234 2.8 13 7 Tu 1 . - CDS 7424 - 7819 341 ## gi|242308947|ref|ZP_04808102.1| predicted protein - Prom 7842 - 7901 5.5 + Prom 7884 - 7943 5.1 14 8 Tu 1 . + CDS 8053 - 8139 93 ## + Prom 8741 - 8800 13.3 15 9 Op 1 . + CDS 8882 - 9697 784 ## JJD26997_0974 hypothetical protein 16 9 Op 2 . + CDS 9699 - 10346 682 ## JJD26997_0973 putative cytoplasmic protein 17 9 Op 3 . + CDS 10343 - 11347 720 ## SYN_01869 conjugal DNA transfer protein 18 9 Op 4 . + CDS 11358 - 11594 359 ## gi|242308951|ref|ZP_04808106.1| predicted protein 19 9 Op 5 . + CDS 11603 - 12458 797 ## JJD26997_0968 hypothetical protein Predicted protein(s) >gi|197282973|gb|ABQU01000077.1| GENE 1 1 - 183 135 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|237749892|ref|ZP_04580372.1| ## NR: gi|237749892|ref|ZP_04580372.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] # 1 60 10 69 69 94 98.0 2e-18 ERLQEDSRHSSDVNLHIKTQGYNNGEEVEVRLESSNNQVLIVRGIIQDNQAVITNIFKDT >gi|197282973|gb|ABQU01000077.1| GENE 2 183 - 914 675 243 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308935|ref|ZP_04808090.1| ## NR: gi|242308935|ref|ZP_04808090.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 243 1 243 243 476 100.0 1e-133 MAVEWKATCGTASASIKCKRPNFDDVKKAYDTINMANPNDMNLQETFRQAIIDNGVWRGI SSKVAEQKAQEILTQIQNGNYDDSVWQRYALVGGTPLSEYINYKNFFGRSSGYADYSNTC ALQVSYALNYGGMPLHTEIKPKEYNSMYGKGKQYLYILGADYMGRFLNDKWGKAEISITA TDEGKYAVLEQIKNKKGIVVMKGFYSHTTLWNESNFVDVVNGVASNYYLTNIGTAKLEFW ELI >gi|197282973|gb|ABQU01000077.1| GENE 3 918 - 1346 386 142 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|237749890|ref|ZP_04580370.1| ## NR: gi|237749890|ref|ZP_04580370.1| predicted protein [Helicobacter bilis ATCC 43879] # 1 142 1 142 142 252 100.0 5e-66 MKKVIWFCCVFFMYLNADDIEFNRELVGKVDKVAYSYDKKIKIIKRIGMEYCIKGNNFDK TQPNIMIMGWYRYKLGVPYGEDIIADLKPYIDNKATITDKTLLHHYQKSNFSRFYTCLNL YDSKEYQDEVERIVKKYCKDCK >gi|197282973|gb|ABQU01000077.1| GENE 4 1436 - 1717 192 93 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308937|ref|ZP_04808092.1| ## NR: gi|242308937|ref|ZP_04808092.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 93 18 110 110 123 98.0 3e-27 MNRAGHKKFPENAKVFIAEDNKQIKEIWEDITEGAEELKDIEKDKLGGSIKRRKLSDGTI IKLRQKSKSGGSAIEIEKESTDQIKIHNIKDKK >gi|197282973|gb|ABQU01000077.1| GENE 5 1714 - 2418 729 234 aa, chain + ## HITS:1 COG:no KEGG:HH0200 NR:ns ## KEGG: HH0200 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 27 234 23 225 225 263 65.0 4e-69 MRYRILTHTQDYLFLELPDEICKLMQNHQKTPYDLEFELFLQIPNLTKVDILEYFEESIL DLATGYSGNGIELDSLFLEFLFDSTNVTAGNSTNPTYISEFINVIGQLFLAGYIEFGMCG LQNKQENLLSNQGSDKYQAWIHFRDNFFYAGAYYRDITEVREKYPNMSDDEYIYSNWDTP QYWDRYRFWVARTEKGTKYFDEILSPRFYNKYKDLEVEIDSKGNVIRWIGQINR >gi|197282973|gb|ABQU01000077.1| GENE 6 2668 - 3099 394 143 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308940|ref|ZP_04808095.1| ## NR: gi|242308940|ref|ZP_04808095.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 143 1 143 143 213 100.0 3e-54 MLLKENLVERLSKTGIRKELEIALLGDSFKARGLNNKNKEEKIKFYRRILGLRRIKNLIK FIDGEIPALFIEDERLKKILAFNGVDLQVFISGKKETKKTIISVSITTTILKEFDKVVDK KKSNRSKVIEKLMKYYISKYCKN >gi|197282973|gb|ABQU01000077.1| GENE 7 3495 - 4268 540 257 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308941|ref|ZP_04808096.1| ## NR: gi|242308941|ref|ZP_04808096.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 257 1 257 257 473 100.0 1e-132 MNFFGFMDETGILTNSKDQPYFALGLLRLSDTSKLLQTITSIKAKHKGIFQAECAKNGKN EDFEMGELKFNSLSQNKYLPLYKDIVEACLSHKYFYFSTILIDKKKIPLQENNTWNLQLS FAKEHIKQNCKNSKIAIIADYLNKPKEAPYFEEEMNTIDQVFNACMLESNTSVFIQIVDI FIGAIIYRYKNPNDTKRLNKAPKMQLVHFIENKLEENYRTMQMSHKGNYDNNKKIQGNFT IFGNDFYFSIYEKKLKE >gi|197282973|gb|ABQU01000077.1| GENE 8 4592 - 5152 384 186 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308942|ref|ZP_04808097.1| ## NR: gi|242308942|ref|ZP_04808097.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] # 1 186 1 186 186 326 100.0 4e-88 MDTKNIIQMLYYIIKNGKKPYDKVSLLKLVFFSDRYHLRKYGRSISHDTYYAMKHGAVAS NVKDILSQNFESDEEQEYFFNYISISDNKYYITNKEKSLEMLSKTNEEAMDFALKHFGNI ETFKLAEISHQYPEWKKMEQLLAGGLKRQKMDIIDFFLDSKIKDDPYQEIPQDIVEMSKD FYLGKF >gi|197282973|gb|ABQU01000077.1| GENE 9 5280 - 5633 274 117 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308943|ref|ZP_04808098.1| ## NR: gi|242308943|ref|ZP_04808098.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 117 1 117 117 181 100.0 9e-45 MARTNQKETDKSELELRVIIKDKRVIDIISSIDFGFKRRFIESAILHFAQNQPSIKLHFE GITKPNKRGRKPKEVLKEVPIIQNETIPQINKQEESVTKKVTQTDETSTQSKLMFNF >gi|197282973|gb|ABQU01000077.1| GENE 10 5648 - 5872 303 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308944|ref|ZP_04808099.1| ## NR: gi|242308944|ref|ZP_04808099.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 74 1 74 74 131 100.0 1e-29 MSKVLINEETKQLILDFNQQDAKNAYVFQNIADMLDNIKEGAEGIVICIALENYLKTEQC YRLFTKSAVEEIPF >gi|197282973|gb|ABQU01000077.1| GENE 11 5875 - 6783 921 302 aa, chain - ## HITS:1 COG:no KEGG:SYN_01836 NR:ns ## KEGG: SYN_01836 # Name: not_defined # Def: MreB-like ATPase involved in cell division # Organism: S.aciditrophicus # Pathway: not_defined # 4 296 5 315 322 136 28.0 1e-30 MQKIAIDLGYGDTKVMANGKLFKFPSAISQVRQSLIQAEKKDTFLFNGIEYEVGSKALRN AVATRGYLFLQKYSPLLIFNALLEAQFDLKKPIEIATGLSLVNQSEAQDFLKHIESFVVN DIQIKPQISLFAQGQGIYNEANIQSNGLVCVIDIGYNTFDFLVFENNQPKVELCFANKMG ANLAIVDLQKLLIKEFKVDFSEQEAKEVFLKKEVRIAGKSIDFADIVNSAIQNYTNFIFD ELFSKSGDTLKKAEAVIIGGGGAYFLTKEHLEQVHNANYVFSDNPEFANVRGYYKGSFSN KE >gi|197282973|gb|ABQU01000077.1| GENE 12 7058 - 7186 186 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKYYGIFKDKIWNKYGVILGYKKEKSREENKAFSEAFHYLGI >gi|197282973|gb|ABQU01000077.1| GENE 13 7424 - 7819 341 131 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308947|ref|ZP_04808102.1| ## NR: gi|242308947|ref|ZP_04808102.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 131 1 131 131 197 100.0 1e-49 MPNNKNNNETKVEKILESYITRSKIKAFLGDFKNFRKSNAKGFLIRIFGHKNGLLLYQKY GILKYNQITERLKKQRLRVKQSAKIQELQAKYPSLNIIKAFTYARLNDKFEITYKDIQQF ENIIKILQNQK >gi|197282973|gb|ABQU01000077.1| GENE 14 8053 - 8139 93 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNAREVAGSKNMRDEAKYGKRDEVKEMS >gi|197282973|gb|ABQU01000077.1| GENE 15 8882 - 9697 784 271 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0974 NR:ns ## KEGG: JJD26997_0974 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 15 271 12 257 257 228 48.0 1e-58 MGAKGLLYFLAMSSIAFSTSNDFFNDSKRGWHYYEKEPITKEEKQEEIINQKETINKETK KEKRELDDEAFMKSIPLNALNSLTVKEYTETFDRVKSIATMKPTKENVKILQAMNKWQTE QSERFAKVWAINLLEDPNLEFPNISNDKFGRTNKGMMAKAETQKFFEEKKDKLSFVVFYS ARDQKGSYNQKAIYDLVEKDYGIKTYYVDLDSNPDLIEKFKLTALPENLFLYKNSKGEGV WHRIKAGFANMDVILDTTQFLFDNAILEEDK >gi|197282973|gb|ABQU01000077.1| GENE 16 9699 - 10346 682 215 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0973 NR:ns ## KEGG: JJD26997_0973 # Name: not_defined # Def: putative cytoplasmic protein # Organism: C.jejuni_doylei # Pathway: not_defined # 25 211 25 211 224 196 50.0 5e-49 MKKLSLILSFSISLFAKEADYILNLGKTYEFKERDILELIQEHLAKNKSQLEKKLLGEKE KLKENIKNWRPKNMVELTPATKNNTFSPDMTWTLTRDIKDRKGNIIYPQGFSFNPAKYTR LSYGIVVINANNKDELEWLEKGSYLNTIAYRIFLSEGSYYEMIKKYQQDFYYLLPEIAKR FQLKHTPSIIKQEGEKIIIQEICLDCKEDKKGGSK >gi|197282973|gb|ABQU01000077.1| GENE 17 10343 - 11347 720 334 aa, chain + ## HITS:1 COG:no KEGG:SYN_01869 NR:ns ## KEGG: SYN_01869 # Name: not_defined # Def: conjugal DNA transfer protein # Organism: S.aciditrophicus # Pathway: not_defined # 26 334 31 339 339 260 42.0 4e-68 MKPKNKILGFGVSMALSIGLLLPPKAEAICNVNPAQIAETMFSMCWECIFPISIAGIPVI QGHMPDPLGTVSTPICLCPAPPPLFIRIGIPIGYWEPSRSIDITKDAYCFAGMGINMGIS STQRGTKGNAESLSRTFFHSHYYIYPVFELIGIFVDTMCLRGVQGIDIAYMTEVDPLWND DQLGALISPEALLFGNPITNLACIADSVSAQANISLDPLFWCKGSWGNAYPLTGNTNTKN YVEDSASVAASMIYKLHRELILWNGATASALCGEHPMPIWLKNAYRMQLMYPIPHPTATG IGQSGIIWTPAKNPQMIGDNFNYLLFKKVDCCAL >gi|197282973|gb|ABQU01000077.1| GENE 18 11358 - 11594 359 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308951|ref|ZP_04808106.1| ## NR: gi|242308951|ref|ZP_04808106.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 78 8 85 85 120 100.0 3e-26 MNVFYNNKILFVINVKHTDMDLLLKQLKVLLQERNIPSGRLTLAPKNPYEIVIIPKREEE FIWDKEKNTLRMSQPYLF >gi|197282973|gb|ABQU01000077.1| GENE 19 11603 - 12458 797 285 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0968 NR:ns ## KEGG: JJD26997_0968 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 42 285 43 294 314 159 39.0 9e-38 MRFTALLVCALFVKTSLFALTQEEEKGLYKNKLPNFQIGVDIDPDTLRDRSKEINPQELL KQMDTNSTKFKEQYGELKFLQSKEAEKHAKEAKEYSNSKEFKDLAKQNKDHILYDKSIDW SKYSIVANNNQELTSQKQQNINKFLDSDDRVFIVISESIPKETIIDYFKLLENVNTDVTF ILRGVVGNDISQINPTLNYIRDLLIKDKNVDMQDPKNHYHYNIEINPKIIRKFKIESVPA VVYVQGYNQALQEATEIPKETGDERYYIAYGNVAVDYALQKINQE Prediction of potential genes in microbial genomes Time: Tue May 24 02:52:05 2011 Seq name: gi|197282972|gb|ABQU01000078.1| Helicobacter pullorum MIT 98-5489 cont2.78, whole genome shotgun sequence Length of sequence - 4091 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 171 122 ## gi|224438892|ref|ZP_03659697.1| tRNA 2-selenouridine synthase 2 1 Op 2 . + CDS 168 - 2444 2079 ## CCC13826_0959 hypothetical protein 3 1 Op 3 . + CDS 2454 - 2891 414 ## CJE1114 hypothetical protein + Term 2964 - 3017 -0.8 + Prom 3008 - 3067 7.3 4 2 Tu 1 . + CDS 3303 - 4089 744 ## CJE1133 hypothetical protein Predicted protein(s) >gi|197282972|gb|ABQU01000078.1| GENE 1 1 - 171 122 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224438892|ref|ZP_03659697.1| ## NR: gi|224438892|ref|ZP_03659697.1| tRNA 2-selenouridine synthase [Helicobacter cinaedi CCUG 18818] # 1 53 110 162 165 75 81.0 9e-13 FTYISTTITTYGLYGDEGSGFRLTNSYSYGITGDNIFYLENGKFIKSDEKDKGGTH >gi|197282972|gb|ABQU01000078.1| GENE 2 168 - 2444 2079 758 aa, chain + ## HITS:1 COG:no KEGG:CCC13826_0959 NR:ns ## KEGG: CCC13826_0959 # Name: not_defined # Def: hypothetical protein # Organism: C.concisus # Pathway: not_defined # 4 501 10 423 1079 156 31.0 2e-36 MNPKDFIEQLKDYADVADASYALLHYIDENEEIDYFLDELKSKNPNKSVKPPARWVYADG IKLGYEITKENTQDKEIQKLIEKNKRKLGQPTAYALAIEARFSQDIKIKNPSKDKPEPIN NEIQNLIHRPKEDSKATQQQILVATTKEKQDKDSDLTYHLSTRTKNFVNRFKLLHHTALE SFFTQSGFSATLFYDTKATSKDLEYIFVIRGSNDANDIITDLKDIFASKSNPKEQYFDML LFYQDCIKQGYITETTPLIVVGHSLGGALAQLFALSFATAESASIIKGVYTYNAPGAKTL QVPYNTNPDSHYIIHFTKQDLLRDESINYKLNQALNEYYNIFLQYEKQNSITHNFERELE KQLWDKAYALKKEQGDNFYLGIYFDSFNAMLPYVTLLKQEEDYRHYSVLPYYYRLYQNYK ERKPLASFESTYHIETKDNAKDFIPVLGYPNNATQHLWTDIDGYYYAINIGGITGIPSHY LKYAIRTLYFYSYLLELESNDTTIHRSIAHRKAKKTSANNATTNTTQNTHTDSTTDNNTN TQTHNTLADYLHELNVFMDNIRIAMNILVYEIDRENQKKYERFKKEQAWYEKTPKHNDID FLALLISQINEIAYKLEALKEDSNTYFTPSIDKENIIEALLQFIESNYFIQIFDNELLRK MRNQCKANAKVSIQEKLSLATCQPFSVVSGNETSYINDSNYHEIYGYKGLGDLLSQEWHE EFTNGKYKIAKGLYFNGNTYSSFTKYMIHNAKEKEVIC >gi|197282972|gb|ABQU01000078.1| GENE 3 2454 - 2891 414 145 aa, chain + ## HITS:1 COG:no KEGG:CJE1114 NR:ns ## KEGG: CJE1114 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_RM1221 # Pathway: not_defined # 9 141 8 128 476 97 44.0 2e-19 MSDLFKITFSIKRESKNIFLFPNNGDYIDCHNIHMQIYNEIQNNTDYQEYQDITEQDLLQ YECFIFLNSQLLLGGSESPISSQEYFFGLLDSKNSDTLLDTLKPIYYFAPKDESSGLGKL SIFYHSSTLTLLNYSIIDSSLRSVA >gi|197282972|gb|ABQU01000078.1| GENE 4 3303 - 4089 744 262 aa, chain + ## HITS:1 COG:no KEGG:CJE1133 NR:ns ## KEGG: CJE1133 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_RM1221 # Pathway: not_defined # 1 262 1 257 349 195 44.0 1e-48 MQYFVTIYIDPIFELEGFTHAFLGLTHTHPDELDKIDSQTRMQKLKNADWKDFDKNWYEK IYPTINPYVLGYDNSNDEGFFGFGSATSPIKMLKDKLFSDGNAGKVFENNQYLVSPDSKT NSYVDWKIRSKETFSNRCVLEISQEQYQTLFQSIQNDVYETSFVGSQGEIKNEKFIYDIT NNNCVTWVLNKLDSIGIEIIDNEEWLPDNISIRDSLLMKFPCLKSYNITFCKFQNIDSNL ESIKGAKAFRTWARSMIENNYM Prediction of potential genes in microbial genomes Time: Tue May 24 02:52:24 2011 Seq name: gi|197282971|gb|ABQU01000079.1| Helicobacter pullorum MIT 98-5489 cont2.79, whole genome shotgun sequence Length of sequence - 1401 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 198 263 ## HH1429 hypothetical protein 2 1 Op 2 . + CDS 208 - 933 731 ## gi|242308957|ref|ZP_04808112.1| predicted protein 3 1 Op 3 . + CDS 953 - 1375 318 ## gi|242308958|ref|ZP_04808113.1| predicted protein Predicted protein(s) >gi|197282971|gb|ABQU01000079.1| GENE 1 1 - 198 263 65 aa, chain + ## HITS:1 COG:no KEGG:HH1429 NR:ns ## KEGG: HH1429 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 2 63 172 228 231 64 53.0 1e-09 KRVELKDIEQNSRAKYSQDVNLHIITQRYENGERLDITLEFQQETFQTYVTLHNNQATIM NIFKA >gi|197282971|gb|ABQU01000079.1| GENE 2 208 - 933 731 241 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308957|ref|ZP_04808112.1| ## NR: gi|242308957|ref|ZP_04808112.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 241 1 241 241 474 100.0 1e-132 MPNVCKVKCGDKEVTLIIQRPKFSDLKKVYEEIDNVGRNEALNVANNHFEATGNEAEANF IYALTLAEKRYEVIGGQAYNEFNKNPRMYINTCALRVSYSLNQSTHPIKDMEKQNTSRAY KGNDGNIYYLGVPDIVELLNKNWKELSWNKSTYNQIKANIQCGCSEDFYQGMANKQDNIN FFTELQSIQRKGIVAMRGPKGFNHTTLWEVDNFVDVKLGTSKNYLLEVDILIRDFYFWEL K >gi|197282971|gb|ABQU01000079.1| GENE 3 953 - 1375 318 140 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308958|ref|ZP_04808113.1| ## NR: gi|242308958|ref|ZP_04808113.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 140 1 140 140 280 100.0 3e-74 MKKIVCVILLCLSCVYGGGDEGFSMMLAKENIKNLRALGIGYCLGYDVEKLYDEFSMSWP KLDVDESARNAIINEVKNAVDTQKKKLTTPKRKYDETALLFHNCFFIDSIGYRETIQRIA EKYCVKNCSSIEQLRNWCKY Prediction of potential genes in microbial genomes Time: Tue May 24 02:52:45 2011 Seq name: gi|197282970|gb|ABQU01000080.1| Helicobacter pullorum MIT 98-5489 cont2.80, whole genome shotgun sequence Length of sequence - 8531 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 6, operones - 4 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 739 528 ## gi|242308959|ref|ZP_04808114.1| predicted protein + Prom 750 - 809 2.9 2 2 Op 1 . + CDS 852 - 1199 93 ## gi|242308960|ref|ZP_04808115.1| predicted protein 3 2 Op 2 . + CDS 1193 - 1342 285 ## gi|242308961|ref|ZP_04808116.1| predicted protein + Prom 1907 - 1966 4.2 4 3 Op 1 . + CDS 1995 - 2126 103 ## gi|242308963|ref|ZP_04808118.1| predicted protein 5 3 Op 2 . + CDS 2113 - 2814 593 ## HH0200 hypothetical protein 6 4 Op 1 . - CDS 2944 - 3384 541 ## gi|242308966|ref|ZP_04808121.1| predicted protein 7 4 Op 2 . - CDS 3365 - 4054 567 ## gi|242308967|ref|ZP_04808122.1| predicted protein 8 4 Op 3 . - CDS 4051 - 4485 435 ## gi|242308968|ref|ZP_04808123.1| predicted protein - Prom 4656 - 4715 8.7 + Prom 4588 - 4647 9.4 9 5 Tu 1 . + CDS 4685 - 5035 295 ## gi|242308969|ref|ZP_04808124.1| predicted protein + Term 5157 - 5199 3.1 - Term 4927 - 4961 1.2 10 6 Op 1 . - CDS 5048 - 7921 3029 ## JJD26997_0941 Cju26 11 6 Op 2 . - CDS 7887 - 8531 345 ## JJD26997_0940 lectin C-type domain-containing protein Predicted protein(s) >gi|197282970|gb|ABQU01000080.1| GENE 1 2 - 739 528 245 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308959|ref|ZP_04808114.1| ## NR: gi|242308959|ref|ZP_04808114.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 55 245 1 191 191 389 99.0 1e-107 RTDTIQIFNKEGIYLFSIERKDRTETKLSTEELYGISGIQWFESGADNYHKLIDVNPDLQ DKEKCEGLGVLYFTWRDIVEFAHENNGDLHWYDILFMTSMSNKLNYARNMPYDWKQSLKG ARGFILVSMEGIPYWADAVGQIPYAIDVYRAFYRQYGNVQKARNGTIKLGYLFADGTPMN ADNSNSYDNAMILRGINWAEKRYYKPTISDCFDEISIKNCGYKTLKVTDYPISNLSKDSN GKDIF >gi|197282970|gb|ABQU01000080.1| GENE 2 852 - 1199 93 115 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308960|ref|ZP_04808115.1| ## NR: gi|242308960|ref|ZP_04808115.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 115 45 159 159 129 100.0 7e-29 MCCGFVSAFILKHYTRFKAICFIIPLFIVYFLFFKVPFVAIMTALCAIILQILSVYLQDK IKIFFISIIFGALLLIAYSGDYVRLTFLLQFVFWWHILWFILLFVAFKIQEVIKW >gi|197282970|gb|ABQU01000080.1| GENE 3 1193 - 1342 285 49 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308961|ref|ZP_04808116.1| ## NR: gi|242308961|ref|ZP_04808116.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 49 1 49 49 93 100.0 4e-18 MVDRGLKFAQKKYMRNKKVYSTHYEWVIADLKPDPNLLALDSDGRVVYE >gi|197282970|gb|ABQU01000080.1| GENE 4 1995 - 2126 103 43 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308963|ref|ZP_04808118.1| ## NR: gi|242308963|ref|ZP_04808118.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 43 52 94 94 64 100.0 2e-09 MRKLSDGTILKLRRTSKSKGSTIEIGNKGDKKIHNKAKEDGDW >gi|197282970|gb|ABQU01000080.1| GENE 5 2113 - 2814 593 233 aa, chain + ## HITS:1 COG:no KEGG:HH0200 NR:ns ## KEGG: HH0200 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 233 1 225 225 224 56.0 3e-57 MAIGKVIGGLYHSLFYEFYELFHNRLKRYDDDWDFELFLQIPNLTKVDILEFFEETILNL ATGPFGEDDGVMELDSSFFTYLLDNNNTMEDNSANPTYISEYINIVRQLFLGGYIDFGLC GLQDKEENLLSRQKDKYQAWIHFRDNFFYTNAFYRDYEILDDSESFSTEEYGKADWDMPK YWDRYTFWVTRTQKGTQYFNEILAPRFYNKYKDLEVEIDSQGNVIRWIGRINR >gi|197282970|gb|ABQU01000080.1| GENE 6 2944 - 3384 541 146 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308966|ref|ZP_04808121.1| ## NR: gi|242308966|ref|ZP_04808121.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 146 1 146 146 244 100.0 8e-64 MSIKSHNTFKIKTIQLKKFDFEQTGKLVVDKKKEINLTQKIGAIAKQENTNSYILQLNVD MAFKQDEQDLFFIDSVIVGAIEVGKNFDEKLLNNMVAIMFSYLRPIVAQMTVMAKLPPLD LQPANFEEFEVKVERREPKTKSANKK >gi|197282970|gb|ABQU01000080.1| GENE 7 3365 - 4054 567 229 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308967|ref|ZP_04808122.1| ## NR: gi|242308967|ref|ZP_04808122.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 229 1 229 229 372 100.0 1e-101 MKHINDLIQPQKYISDLPQQDQKELKYYFEDLLSIDNNIVFELYESPSLYTIYLDDKVYD GLEKKLEKILERDCKLEKFVLYAPERFRFSYEEKIEVPNFAINVEENFNDFSYKRKEVYS LKDNRNNMTYFDFYFSNHDIECVNQSNKLPLAKYSIVDKGVSYNVEENFNDFSYKRKEVY SLKDNRNNMTYFDFYFSNHDIECVNQSNKLPLAKYSIVDKGVSYEYKIA >gi|197282970|gb|ABQU01000080.1| GENE 8 4051 - 4485 435 144 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308968|ref|ZP_04808123.1| ## NR: gi|242308968|ref|ZP_04808123.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 144 1 144 144 228 100.0 8e-59 MGLIKKGERNLEIAKILDTQEFLEMSNLQKEHLCSTIINRLYYGIYLIGKGKLLQKDSTL KEEDFLGHGTLNQINNQNLNPNSKHLWIRLMQYYPKATCIRGLKLKEIREMYDYRSDDMN KALQDLQSAKSIAQELAKQLKELQ >gi|197282970|gb|ABQU01000080.1| GENE 9 4685 - 5035 295 116 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308969|ref|ZP_04808124.1| ## NR: gi|242308969|ref|ZP_04808124.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 116 1 116 116 170 100.0 3e-41 MENIKLIIYGVGIIVLALLIFGIFKKNALRTDPKLATRRVKKNEGSFFKLLFFPEIEIGS RISNLNKQLNKQAEDNNKLLQELVKLQKENLELRKREENRKEIEKRKQGYKKSSNV >gi|197282970|gb|ABQU01000080.1| GENE 10 5048 - 7921 3029 957 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0941 NR:ns ## KEGG: JJD26997_0941 # Name: not_defined # Def: Cju26 # Organism: C.jejuni_doylei # Pathway: not_defined # 18 877 1 868 922 333 29.0 2e-89 MQISMLQQAKIKEGGSLVKKFLLLFIFFGVIAFGATNVPNTHLIYTWGYASLMNETLQAL RGLLQDSGKILFSISALIGLAVYIFRSSYNDKLNPLFEIGKFFVVALVIAFLFFRTSNDS THRFMVFDEVTTEVYMVDGIPLGVGATLSFFSRLERGILMAMEKHYSTPDSLLMRNAGVG FSTKAIMNLSYFRNSNSDYVLKYNMDNYIGICYNYNVRYDPNVKQIEYSDNLYRDLIQGQ ALVLTRGLIAPVMDENRNIEVSNCEALSKTIQEQFSKLADSNVKSYLKMLNPSQANQANV EASATALSSIYRSNWNGSRDMLQQFMLINFMRDGIRNMEKMYDLGAGTLSTPHSIAHYNL FNQMQQQGFLAQTYLPLIKVYLSMIAASISWIIALLTVALGTAKWLKMYFILFLWLIIWT PMISLINYFNDLNLMSVFSAMKDTGSGMAMTFAGNTDFFMKVIENANVLNYLVMGTALLS FAIATASGMGFVSFASQLTQGLQGSARTASTFQQQQATATEAKMAIGEEVYVSQPAMNMV NSASWNNGVSSMNSFTFGKGGMQTNADYNIGEGALTFRMGNDGNVISANSSVVGMNAMKS HITQSAENISNDIGSNLATQNTEQVNASYQKALNASNQTGAGTANEIGHQAIEDLQKQGI ITKEQADQIQLSGGLLKYVGFGASTSDTDRASDSLSKAEQDRISEAYKLAFTKNALLNDS VSNAMSESVNHTDSNALQESMNMSKNYQQIMQRADNLNINTLKDELQNGAREMFGVETWD NANIHQRGEMVKEFGTRLIQGDLAGTHITAQDAGVNENVTAYYNLNGKANVSGFYNSHQG DVRSQDNVNIGSVASDEKIQKLDENIYHHNTNKNDEYDKKRMSLEAETGVGNLGKVSANV DGAIETVKEVASNFPKVTLGTYVMSEFARNVAIDGEKDKNAFLDNSSETKEILNLKY >gi|197282970|gb|ABQU01000080.1| GENE 11 7887 - 8531 345 214 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0940 NR:ns ## KEGG: JJD26997_0940 # Name: not_defined # Def: lectin C-type domain-containing protein # Organism: C.jejuni_doylei # Pathway: not_defined # 2 213 520 727 730 235 60.0 6e-61 GKLQCSPHPCFVNSNGGDPIIEVSGNPTGVNDADNNGWNEDGSCSGEILIFNGKDNRCRS SDKLLGLTGGGCCDKDKVFLGLISCKESEKNLAKQNEQKKCHEVGEYCSKKINLGFSKIC IQNSKSYCCFNSLLGRIFQEQGRQQLGIGWGSGDSPNCRGFTPEQFQKLDFSRINLQEFI DALTIQVDDSFAQRQSQKIKDKINANLNATTGKN Prediction of potential genes in microbial genomes Time: Tue May 24 02:53:58 2011 Seq name: gi|197282969|gb|ABQU01000081.1| Helicobacter pullorum MIT 98-5489 cont2.81, whole genome shotgun sequence Length of sequence - 9622 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 2, operones - 2 average op.length - 6.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 1129 1027 ## gi|242308971|ref|ZP_04808126.1| conserved hypothetical protein 2 1 Op 2 . - CDS 1141 - 2601 1232 ## JJD26997_0938 putative TraG 3 1 Op 3 . - CDS 2589 - 3155 421 ## JJD26997_0937 putative type IV secretory protease 4 1 Op 4 . - CDS 3152 - 3616 475 ## gi|242308974|ref|ZP_04808129.1| predicted protein 5 2 Op 1 . + CDS 4276 - 4635 250 ## gi|242308975|ref|ZP_04808130.1| predicted protein 6 2 Op 2 . + CDS 4635 - 4934 211 ## JJD26997_0929 putative sex pilus assembly 7 2 Op 3 . + CDS 4936 - 5511 512 ## JJD26997_0930 putative conjugative transfer protein TraE 8 2 Op 4 . + CDS 5508 - 6308 847 ## JJD26997_0931 hypothetical protein 9 2 Op 5 . + CDS 6305 - 7636 1363 ## JJD26997_0932 sex pilus assembly protein 10 2 Op 6 . + CDS 7640 - 8410 842 ## COG1651 Protein-disulfide isomerase 11 2 Op 7 . + CDS 8397 - 9401 1016 ## gi|242308981|ref|ZP_04808136.1| predicted protein 12 2 Op 8 . + CDS 9414 - 9621 215 ## gi|242309802|ref|ZP_04808957.1| predicted protein Predicted protein(s) >gi|197282969|gb|ABQU01000081.1| GENE 1 1 - 1129 1027 376 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308971|ref|ZP_04808126.1| ## NR: gi|242308971|ref|ZP_04808126.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] # 1 376 1 376 376 607 100.0 1e-172 MNILRFILISVVCSSFLYANDNLKEGNSVGNSLLNYFRGNMDLTINSPISNGSQLQTVDG TQSGNANISCSGENSKIEYMEIEYASGVSGINITISIDKNYDGIKESKYNFSGVTGICAS GFVKNNPLLGLSYYQWEVNNGNVTTKEIFNSESISCYDITKGGISTSQKQRILQDIGGGI SSYFTSSEQFIISGATYKNSSLVYYGETYNNCSNAGSINVTRDSDLASMTQSEASSQSLN ENSVYSVFEKGSDNMTKLDKETQSAISGTQANVEDSLKYNQNNFSYSYTNGGEKVNNFYQ AENVKIQYCEVLTQKIDTSIFSDGTTRGESTDSNVTLVGEIRECTNNYTICPVDTTKGES IKHNCGSIDNFEEAIG >gi|197282969|gb|ABQU01000081.1| GENE 2 1141 - 2601 1232 486 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0938 NR:ns ## KEGG: JJD26997_0938 # Name: not_defined # Def: putative TraG # Organism: C.jejuni_doylei # Pathway: not_defined # 1 478 1 475 488 290 35.0 1e-76 MVTVKKKIVVSVILSAMLGQQVANASLSNFVSQSLDTAVLNQDAGYFKSQAGGLMSLGSS RIRFGGGNGIINPFNIQTPSLNIGCSGIDMVFGGFSYLNFDNIVEKLKKITTAAPAFAFK IALSTLCKDCDTIMTELEQIANAINGMNFDTCTALNNWSDKLAGSLKSNIGSTAIESGVV EDWISGFSDGVSDSVNRFTNFINGKFPSDDGGTASDKVYGQGSLLRQVLEHRKDIYFRKL IGENDYEDLLRDLIGDVVVFDSGKQSVSTGEETVDFKSIFIGGSLEAKEFASAVFGEFDT QQTKESTLRILTWSIVKDNKTGNYKKPTESDSKEVKIKHFIGEISNRIQKIVENGRANKE LSEDDKYFISALSMPIVKLVDVLIASPNINGEPYFKIAAVSTFNDFINGLIADVQKALII GMDKTQIEKEIQEEHLSKFREKVSKMRAEVDARAKIFKSKFADETKQLEAIENLVKGYNV RTQAGK >gi|197282969|gb|ABQU01000081.1| GENE 3 2589 - 3155 421 188 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0937 NR:ns ## KEGG: JJD26997_0937 # Name: not_defined # Def: putative type IV secretory protease # Organism: C.jejuni_doylei # Pathway: Protein export [PATH:cjd03060] # 56 186 35 165 167 124 48.0 2e-27 MTKVKVIFLCLNPMEFIRKFGIKSVLKASFFSVFLGLLIIGALFVAKKHYLGDKYYFGIL ISDSIVGKDFVVVDKEHSLKNLKGEILAFDFPLDTDYFKKGKSFAKYVKCEEGDLLENKS GKFYCNGEFIGGALPKDSKGNPVQDFKWNGIIPKDSFFVMGTHTYSFDSRYWGFVTKKDV KGVVVWLQ >gi|197282969|gb|ABQU01000081.1| GENE 4 3152 - 3616 475 154 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308974|ref|ZP_04808129.1| ## NR: gi|242308974|ref|ZP_04808129.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 154 1 154 154 256 100.0 2e-67 MQKKSEETKKTENLKYPRNILNLLYVVFFACIVFFILAFFNVGGFKDKMQSKKDKESYAT LNVFYIQSNSLEDQIVTFIASKIIQNGSNQIPNMASYNDSLLILDGVVNNIARDNQAIVV KDDSLFSFENTKNITGFVLEKFKEEFNKRYKEQQ >gi|197282969|gb|ABQU01000081.1| GENE 5 4276 - 4635 250 119 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308975|ref|ZP_04808130.1| ## NR: gi|242308975|ref|ZP_04808130.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 119 1 119 119 172 100.0 5e-42 MFANIQENGLSSNLHWNKKIGWLLISVFIFLLFSSTMIAGTSTDSFGFSDLKDSIVNELF NNQSLRVIIILLLLGIGLFGSYKMSSLVPFAFTGLIAIFFVFLPKLAEGAAAGINAGLF >gi|197282969|gb|ABQU01000081.1| GENE 6 4635 - 4934 211 99 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0929 NR:ns ## KEGG: JJD26997_0929 # Name: not_defined # Def: putative sex pilus assembly # Organism: C.jejuni_doylei # Pathway: not_defined # 3 99 5 101 101 70 40.0 2e-11 MGQSGRTFINKYIDKKMMVCNWEMDIAMLYVVALYIALVAPFEGLSRVVFSIACFYSVFY FSKIRNARIKGFFTHIVYMIGFLKPKSYPPSYMRYFLGG >gi|197282969|gb|ABQU01000081.1| GENE 7 4936 - 5511 512 191 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0930 NR:ns ## KEGG: JJD26997_0930 # Name: not_defined # Def: putative conjugative transfer protein TraE # Organism: C.jejuni_doylei # Pathway: not_defined # 1 180 1 180 192 204 56.0 2e-51 MLEKFYKNKLDRYIFENITFRIITIALLMIIIYLVWILSTRINEQKIVFMPPKVITQEMW VKGNEVSKSYLQDMGQFIASNLLNITKDNAKNNVDNIMHLIEPQFYNKVRAELIAQTEYI INNSISRTFFVSSVNADTKGLIKVMGVIKDIIGDKVVNSENYIVEIGYKMKQGRFWINSI DSKNEFKRTEQ >gi|197282969|gb|ABQU01000081.1| GENE 8 5508 - 6308 847 266 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0931 NR:ns ## KEGG: JJD26997_0931 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 19 262 15 259 270 259 56.0 7e-68 MIKKIITIIAFCLGSFNFLFATTIIDNPTSDSIEVNVSNKMVNRIVFPSKILDTSYSQEV GLVIQVYGNEAFIRYQPKIKEKVKKVGNNVEVVGEPEYIYDTAKPTEIFFITETKTYSVA LHPKSIDSETIIINDFRAEKQEILKYETEDNYITTLSKITESVLKGGTPQGYKVKERPKK LKDLKDISVSYVNLYEGVLYSAHLLEVKNKTKEALILNPKEFIAYAKDSPKSISIYYDNE VNHLLPLGYAKVVIITKTKKETKDKK >gi|197282969|gb|ABQU01000081.1| GENE 9 6305 - 7636 1363 443 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0932 NR:ns ## KEGG: JJD26997_0932 # Name: not_defined # Def: sex pilus assembly protein # Organism: C.jejuni_doylei # Pathway: not_defined # 9 429 5 436 446 349 47.0 1e-94 MKEKLTHFFKIFFSNDNGNSDDTETKQKRKILFLGVAILVILVFVFLIFSGNSNSETNAI NDKNIGNFVLTDKDENVRTNWIGSAAEDLELSKKKIDSLSITNQRLNTELETLKKTVGNL VTNKEKKEKESQSSNIETPKNVTLNGIELPDLGNVNLYKDFPKPNESNNFGLEKTGEVPP IQETYEERTRALENPLVFNNHAQRTIQEVKEEAKEKHYIPTGSFVKVVLLNGVDAPTMTQ AKTNPLPVLMRVVDTSVLPNSWQYDIKDCFITGEGYGDLTSERAYIRTNTLSCMANDGRH INLDFKGAVSGEDGKIGLKGRVVTKQGALLARTLIAGFLQGVGESFGQQDTTTIVSGSGT TTVPLDQTANEAFQQGLFQGLSDSAEKLADFYLKMADQISPVIEISAGREITVITTDLTE IKSIEEEAKKSTSNNTKQPNTKG >gi|197282969|gb|ABQU01000081.1| GENE 10 7640 - 8410 842 256 aa, chain + ## HITS:1 COG:PA3737 KEGG:ns NR:ns ## COG: PA3737 COG1651 # Protein_GI_number: 15598932 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Pseudomonas aeruginosa # 18 229 14 222 242 68 25.0 2e-11 MKRVFKISFLSIALSSILMAELSLTERQEESLVKTIMPSTKIEKVDRAVIDGFYKAYLKN GNILYVNPYNRAIFIGDIYTAGGINVSAQEREEWKNELNKAILKSLNAKKLTEHSEKIIF GKGSKDYQFVIFTDPECPFCNQVEKFLSENNATIYANFYPLSFHQNAKKWSLEILSSKDH KEAMLKIQKTQKDLGVEITKEAEEQLTKMMSLGETLEIQGTPKIYVISGDKVVDIIEGAN IPKLEKYLKGNSNDKK >gi|197282969|gb|ABQU01000081.1| GENE 11 8397 - 9401 1016 334 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308981|ref|ZP_04808136.1| ## NR: gi|242308981|ref|ZP_04808136.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 334 1 334 334 487 100.0 1e-136 MIKNKILYSSLVLAGVLSLSGCSAMLPYEDNFKCEKGIDSGVCASVNDVYELSDDMDKLR TINASGENIPQKPTKEIAISNIDSNNLRNIANSISIKQIQNGKPVVFKIKETTLTKNYYA GSDHKYIVPHNQEVVEYLLKDKEAYKRRLNNESNDAFKDYLYKKDSNSSSIRNRSTISNN LSNDNLSNGSSFNDSNQLKNNQNDLLAFLNESDNKRAYGVSKKTNNSNALNSTNKFNNSS NSNNSNDLNGFNHSSNANLNNPHCQSGDMQIKYINSNVKVCVYQANIREKPSCRANILGI ANKGEVMFAEYEQGGWVKLNNGTFIHRSIVTIEK >gi|197282969|gb|ABQU01000081.1| GENE 12 9414 - 9621 215 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309802|ref|ZP_04808957.1| ## NR: gi|242309802|ref|ZP_04808957.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 69 1 73 284 68 61.0 1e-10 MFNKILIGFLLGSLVLTQIWANKPSSKEKKEQFVINEESFNLIKSALIKVIKENKELKER LNQLETKVD Prediction of potential genes in microbial genomes Time: Tue May 24 02:55:07 2011 Seq name: gi|197282968|gb|ABQU01000082.1| Helicobacter pullorum MIT 98-5489 cont2.82, whole genome shotgun sequence Length of sequence - 9442 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 3, operones - 2 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 592 662 ## gi|242308982|ref|ZP_04808137.1| predicted protein 2 1 Op 2 . + CDS 589 - 1050 451 ## gi|242308983|ref|ZP_04808138.1| conserved hypothetical protein 3 1 Op 3 . + CDS 1040 - 3640 1597 ## COG3451 Type IV secretory pathway, VirB4 components 4 1 Op 4 . + CDS 3630 - 3884 341 ## gi|242308985|ref|ZP_04808140.1| predicted protein + Term 3887 - 3920 3.4 - Term 3875 - 3909 5.3 5 2 Tu 1 . - CDS 3912 - 4184 431 ## gi|242308986|ref|ZP_04808141.1| predicted protein - Prom 4292 - 4351 7.5 + Prom 4238 - 4297 8.4 6 3 Op 1 . + CDS 4322 - 4537 163 ## gi|242308987|ref|ZP_04808142.1| predicted protein 7 3 Op 2 . + CDS 4534 - 5241 582 ## gi|242308988|ref|ZP_04808143.1| conserved hypothetical protein 8 3 Op 3 . + CDS 5234 - 6058 829 ## JJD26997_0840 hypothetical protein 9 3 Op 4 . + CDS 6072 - 6761 612 ## gi|242308990|ref|ZP_04808145.1| predicted protein 10 3 Op 5 . + CDS 6761 - 8140 1320 ## JJD26997_0837 DNA transfer in the process of conjugation and F pilus assembly protein 11 3 Op 6 . + CDS 8140 - 9442 1056 ## JJD26997_0836 hypothetical protein Predicted protein(s) >gi|197282968|gb|ABQU01000082.1| GENE 1 2 - 592 662 196 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308982|ref|ZP_04808137.1| ## NR: gi|242308982|ref|ZP_04808137.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 65 196 1 132 132 192 100.0 1e-47 NSQNILVLASYSKDKIKEIKLQNNEEFERFKAQQKEVLEKTKKQKIIPNKKIQKQEAISI NHDEMIKNVIEHFKNDTKTPLEAYFVRKSHAREGAGTENKSVKIHQAGDETKILGIENNA GDYWFQIADSNFTHSKNLKPIFKENKKSKVKTDPIVKEQASKLVKEIKQEQTKSKIELDM EKAQKILDEKINGGNQ >gi|197282968|gb|ABQU01000082.1| GENE 2 589 - 1050 451 153 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308983|ref|ZP_04808138.1| ## NR: gi|242308983|ref|ZP_04808138.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] # 1 153 1 153 153 291 100.0 7e-78 MKINSKISFYSLLIVGAMSLSGCLANKQVEITPNHLDAELTNLMKGEERAYSDDEEAVIS ALLKNSPSYAQAKRQEAVEENIVQLPNNMPLYREPLFAQLVVFPYVSKTGIYHGYSESWI KIKEGEFVLSDPKSANQRERYRTFNEAGYSNGK >gi|197282968|gb|ABQU01000082.1| GENE 3 1040 - 3640 1597 866 aa, chain + ## HITS:1 COG:PSLT088_2 KEGG:ns NR:ns ## COG: PSLT088_2 COG3451 # Protein_GI_number: 17233453 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB4 components # Organism: Salmonella typhimurium LT2 # 314 858 12 560 593 123 24.0 2e-27 MENNIKNSVIKNYQKSKEMVSNAQEKGSTYYKKKSHELKQKALKPFDDLTSLPTSIWNKI FKRYRISDFLPYAFYNDKEKIFRNNDNTYGSVFQISPRIKTGEATAVTLREIIDRLPEGV FLQFMLFGSKNLNNQINFWEQEHLKRGIAEKDEFLMNAVSSMSDFYRSKTKNPLSKSMIT MAKNYTIIISLKSENKGKLLTFKRDVKNIFESNNYYPIELTPQNLKIFLYEIFNPEHDLN NIPNYDENMYLSRQLIAPNTPFAVKDTHLEIDTKSWISLGLQSLPKEFHISDFGEKIGDT LSSALDSNQFVDTFFITSSIYLLPQKKTKEASRNHTFNIQQKWSEAIFREFAAVRQESLG IIDRIDQKKERLYAFDLNVLISGKDYEQASENADRIISYWNKGGDQGIIMGKALGIHQLN FLASLPMGINEEYLFTLTKKYRSLFSEQIAQFIALEADYAGNSPNLVFYSRRGQMAGLDL FVSNTNYNGFVVATSGAGKSVLLNMLAFNSYARGDRVFIMDYDNSFFKLCETLQGQYLEL NLEKPISFNPFSEIHSKEELKSDLVYLGSLIYMMGASKNIDHSEKHEKLITSKLHEIVEK LYDEIGEKMEITNIRDEIKTIEDQRFQDFANQLRPFCREGIYGKFFSGKCDFNIKKEFIV TEFKAMDNTPDLRDTLIMLMIYHLNQLVYMGGSNETRTTVIIDEAHKFLGRNILMDEMIE QGYRRFRKYSASAILATQGFNDVYNIESKSLSKAGSAIINNSAWKVFMKQTEVSANALLK SQLFSFTQIEENIIKNISTKKGEYSELMLISPEEVKVPYRLIMDRFFYYVTTTDPNDKKR IQKLVDSGVPLGEAIKQLVKEDENAS >gi|197282968|gb|ABQU01000082.1| GENE 4 3630 - 3884 341 84 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308985|ref|ZP_04808140.1| ## NR: gi|242308985|ref|ZP_04808140.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 84 1 84 84 127 100.0 3e-28 MQVNSIADSLFKDFIEVFMIKEKSKKIEGLIKMKEKIKNLNSFPKSEKDEQLSCYLDSFS SLIDFGDRNLLIRNIEKELAELQR >gi|197282968|gb|ABQU01000082.1| GENE 5 3912 - 4184 431 90 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308986|ref|ZP_04808141.1| ## NR: gi|242308986|ref|ZP_04808141.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 90 1 90 90 167 100.0 2e-40 MNGDRLLDYNNVIAGERLKIIRESLGLKRNEMAFVLGVTDKLLQNYETGHKKIGIDFAKS IYDVYKANPIFLTFGIGEPILNKNLEDLFK >gi|197282968|gb|ABQU01000082.1| GENE 6 4322 - 4537 163 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308987|ref|ZP_04808142.1| ## NR: gi|242308987|ref|ZP_04808142.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 71 1 71 71 115 100.0 1e-24 MAKHLVVKELKRRGMNVSYFCKKHRLNINTFYAVITGRYRNQEVINILRKRRLLSHLYNE FPELRIGIYKK >gi|197282968|gb|ABQU01000082.1| GENE 7 4534 - 5241 582 235 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308988|ref|ZP_04808143.1| ## NR: gi|242308988|ref|ZP_04808143.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] # 1 235 1 235 235 350 100.0 3e-95 MKNSPIQQISELTKIYGISEIEIIDLLRKAVTKSSPHKEIEVEVSNQKLIFYKTFYNRYN ELKKEQIKLKVEDKNKINKIFYKLLFKESQLRIFKNIKDFQKSNNGVISGEVIGKVANGF KVLTKFGTAYLPFSAIPIAEKNKKIFKKNVAHYFHINKVTIKMGVLKIVLDRYSKNILLQ DIKEIIDTQEQNLININRDIGSKITLYVKNKIDKESIKRLSKRYKEKVKVKVLNA >gi|197282968|gb|ABQU01000082.1| GENE 8 5234 - 6058 829 274 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0840 NR:ns ## KEGG: JJD26997_0840 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 45 274 39 267 267 221 54.0 2e-56 MLDNSRESKARDNIGRKNQGGDRWRGSELDSIIEAEQELYRTRIDSRNIFTILSEIQRYY VIERRSDELPKEYFTIEQILGYFKSGFVNGMAESFIFLTLVPFLTIIYPSFKYYFLDSNI TDGEILFFQIISYSPIIISTLFIIYIGKYYYGTITRRAIFSLINGRSLSFMVKGVLFYFL INWFIGYSLKNPNVLYELADITQAGINMFSELKISTEALYQYYYKYAVIALREASLSILL TMLFFVALPYGTIFLISYIKRVKKQKILEDLETY >gi|197282968|gb|ABQU01000082.1| GENE 9 6072 - 6761 612 229 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308990|ref|ZP_04808145.1| ## NR: gi|242308990|ref|ZP_04808145.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 229 1 229 229 384 100.0 1e-105 MEGQKNMENNGNKIEKVRKNKGNNMENKNQKKLNINVSLSDFQKHIEYEKQFLFKLIPFL KTFKLNIFNYNTNIGNLALSIGNILDIRSDDFIFACYYANMSFLSMEHLLRKETLNEEEL KTFKRHIYLSADFLEKINLPKSAEIVLYHHEKPNAQGYLRKQSYPKESAIINIAEEFTEA ILPREYRPQYTLKEALQLALEPYKNSIFFDNREYEIIKKKLTNSYLELV >gi|197282968|gb|ABQU01000082.1| GENE 10 6761 - 8140 1320 459 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0837 NR:ns ## KEGG: JJD26997_0837 # Name: not_defined # Def: DNA transfer in the process of conjugation and F pilus assembly protein # Organism: C.jejuni_doylei # Pathway: not_defined # 2 453 1 449 455 550 61.0 1e-155 MLFLTKETSQRTYVGKGFALEDKRKENLLDIYQDDDNRPNHTFVFGSTGVGKTRLLEGLM EQDIKKGQSVVIIDPKGDIGLFSKMVEMAKKCQREQDLMFISTIFPKYSLKINPLNNYFI DEEIISNIISGVPAKDEFFLKVAQETTTAIVKSLVLLRKINGNDEPITFEEVAKKAHYRG IESLKDELDSIESCNEDTDLNADLIRIKSLLEQVMSSNQDYFSKVTTTLRTTLSEMSVGN IGKIIGNVKTNKFIDRLEEDKPVLLYVMTGSMVTRESSSILAKIVVSMIQCCVGRVISSG KSFTHRLNIYIDESASVLYRGIETLYAQGRSSNINLTGLTQSKADLIAAIGDDAADRILD LTNTKIIMRINEQKSAKMISDMAGKRMGYSVFLNLDGGLNSREVEEMNIETDDITQLQKR EFFYFGFEGRFKGKTAPVSNCKLQIIFPDISTKEARKNR >gi|197282968|gb|ABQU01000082.1| GENE 11 8140 - 9442 1056 434 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0836 NR:ns ## KEGG: JJD26997_0836 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 1 408 1 434 800 117 26.0 9e-25 MLSVIENSVKFVLKHRYLRMGINYIVISLVFFFFVVAFMIFYKTGVIYYNPTILLHKKTY LWLWENYKTIFIFAVFIEQFILWLFLFYNKAKTNKSSFQQEEVEKVPLENFVHLWLSEEE MEDLYKKTPQKEKQLRMIRDPESLEVWINTVNDLFIDEIKLFIYEVIRPNFELFSEKELQ MLVMFLSFLQENKECPSVTSIYHSDSNKAYKEDMITLNISAYEALSKYVPLLTHSLNVAK NAVKIIELEKISVSKKKKIIPQSILASLAHDLGKIERYNSQVTTNKDYVKRVKELPHQEI SSMIVNEIGYIGIKMDDEYIKEIARVVKMHHTPINKDDLLLYILIQADWATRNKEKLYCI EQIKNEAKKKNEQEAKEVIEKNTETTQQESIETKTIHIAEFENRSSSEVLGLKNKDSYIA MLNLTRETRKNTIK Prediction of potential genes in microbial genomes Time: Tue May 24 02:56:28 2011 Seq name: gi|197282967|gb|ABQU01000083.1| Helicobacter pullorum MIT 98-5489 cont2.83, whole genome shotgun sequence Length of sequence - 57399 bp Number of predicted genes - 65, with homology - 63 Number of transcription units - 21, operones - 14 average op.length - 4.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 2 - 61 3.3 1 1 Op 1 . + CDS 81 - 824 572 ## gi|242308992|ref|ZP_04808147.1| predicted protein 2 1 Op 2 . + CDS 833 - 1138 375 ## gi|242308993|ref|ZP_04808148.1| predicted protein 3 1 Op 3 . + CDS 1135 - 1593 356 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 4 1 Op 4 . + CDS 1571 - 1900 456 ## COG1525 Micrococcal nuclease (thermonuclease) homologs + Term 1938 - 1985 -0.9 + Prom 2039 - 2098 6.4 5 2 Tu 1 . + CDS 2119 - 2538 184 ## JJD26997_0964 putative thioredoxin + Term 2606 - 2653 3.1 6 3 Op 1 . - CDS 2624 - 3799 2003 ## PROTEIN SUPPORTED gi|239524421|gb|EEQ64287.1| 30S ribosomal protein S15 7 3 Op 2 . - CDS 3841 - 4875 701 ## COG3513 Uncharacterized protein conserved in bacteria - Prom 4961 - 5020 7.3 + Prom 4970 - 5029 8.5 8 4 Op 1 22/0.000 + CDS 5054 - 5278 279 ## COG1918 Fe2+ transport system protein A 9 4 Op 2 . + CDS 5278 - 7389 2018 ## COG0370 Fe2+ transport system protein B + Term 7390 - 7433 8.0 + Prom 7520 - 7579 7.0 10 5 Op 1 . + CDS 7646 - 7948 196 ## gi|242309001|ref|ZP_04808156.1| predicted protein 11 5 Op 2 . + CDS 7959 - 8258 388 ## gi|242309002|ref|ZP_04808157.1| predicted protein + Term 8272 - 8316 1.5 12 6 Op 1 . - CDS 8369 - 9997 1054 ## COG0286 Type I restriction-modification system methyltransferase subunit 13 6 Op 2 . - CDS 9997 - 11241 1290 ## COG0814 Amino acid permeases - Prom 11272 - 11331 9.6 + Prom 11271 - 11330 8.2 14 7 Op 1 . + CDS 11357 - 12268 732 ## COG0685 5,10-methylenetetrahydrofolate reductase 15 7 Op 2 . + CDS 12258 - 13421 678 ## COG0772 Bacterial cell division membrane protein 16 7 Op 3 . + CDS 13475 - 14740 1344 ## COG0019 Diaminopimelate decarboxylase 17 7 Op 4 . + CDS 14740 - 15804 1135 ## COG0077 Prephenate dehydratase 18 7 Op 5 3/0.000 + CDS 15849 - 16382 550 ## COG1580 Flagellar basal body-associated protein 19 7 Op 6 . + CDS 16385 - 16744 220 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) 20 7 Op 7 . + CDS 16815 - 17366 287 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation 21 7 Op 8 2/0.000 + CDS 17366 - 17563 251 ## COG3197 Uncharacterized protein, possibly involved in nitrogen fixation 22 7 Op 9 . + CDS 17560 - 18516 981 ## COG0492 Thioredoxin reductase 23 7 Op 10 2/0.000 + CDS 18594 - 18782 311 ## PROTEIN SUPPORTED gi|239524438|gb|EEQ64304.1| 50S ribosomal protein L28 24 7 Op 11 . + CDS 18804 - 19934 1141 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component 25 7 Op 12 . + CDS 19927 - 21117 937 ## COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase) 26 7 Op 13 . + CDS 21190 - 21414 437 ## CFF8240_0974 hypothetical protein 27 8 Op 1 . - CDS 21415 - 21741 279 ## Bind_2158 CutA1 divalent ion tolerance protein 28 8 Op 2 . - CDS 21745 - 22017 177 ## WS1042 hypothetical protein 29 8 Op 3 . - CDS 22019 - 22834 764 ## gi|242309020|ref|ZP_04808175.1| predicted protein 30 8 Op 4 . - CDS 22844 - 23509 352 ## Sdel_1183 hypothetical protein 31 8 Op 5 . - CDS 23541 - 24020 410 ## WS1039 hypothetical protein 32 8 Op 6 . - CDS 24031 - 25749 1506 ## COG1164 Oligoendopeptidase F - Prom 25814 - 25873 7.0 - Term 25890 - 25926 4.2 33 9 Op 1 41/0.000 - CDS 25942 - 27582 1753 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 34 9 Op 2 . - CDS 27604 - 27864 448 ## COG0234 Co-chaperonin GroES (HSP10) - Prom 27899 - 27958 7.5 + Prom 28059 - 28118 9.1 35 10 Tu 1 . + CDS 28143 - 29321 1296 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Term 29405 - 29444 4.3 36 11 Op 1 12/0.000 - CDS 29504 - 29827 383 ## COG2076 Membrane transporters of cations and cationic drugs 37 11 Op 2 . - CDS 29820 - 30179 362 ## COG2076 Membrane transporters of cations and cationic drugs - Prom 30313 - 30372 9.3 + Prom 30109 - 30168 7.5 38 12 Op 1 3/0.000 + CDS 30392 - 31417 854 ## COG0337 3-dehydroquinate synthetase 39 12 Op 2 3/0.000 + CDS 31414 - 33072 1551 ## COG0668 Small-conductance mechanosensitive channel 40 12 Op 3 3/0.000 + CDS 33085 - 34359 1085 ## COG0621 2-methylthioadenine synthetase 41 12 Op 4 . + CDS 34346 - 36031 779 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 42 12 Op 5 . + CDS 36018 - 36326 112 ## gi|242309033|ref|ZP_04808188.1| predicted protein - Term 36279 - 36315 2.1 43 13 Tu 1 . - CDS 36327 - 36662 473 ## gi|242309034|ref|ZP_04808189.1| predicted protein - Prom 36808 - 36867 6.7 + Prom 36537 - 36596 5.3 44 14 Op 1 . + CDS 36700 - 36891 104 ## 45 14 Op 2 . + CDS 36833 - 37786 392 ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase 46 15 Tu 1 . - CDS 37783 - 39372 1600 ## COG0840 Methyl-accepting chemotaxis protein - Prom 39441 - 39500 13.7 47 16 Tu 1 . - CDS 39503 - 40705 950 ## COG0642 Signal transduction histidine kinase - Prom 40804 - 40863 8.3 + Prom 40816 - 40875 11.3 48 17 Op 1 . + CDS 40899 - 42947 1614 ## COG0751 Glycyl-tRNA synthetase, beta subunit 49 17 Op 2 . + CDS 42957 - 43559 495 ## COG0134 Indole-3-glycerol phosphate synthase + Prom 43567 - 43626 6.6 50 18 Op 1 3/0.000 + CDS 43648 - 43899 377 ## COG1145 Ferredoxin 51 18 Op 2 2/0.000 + CDS 43899 - 45356 1067 ## COG0248 Exopolyphosphatase 52 18 Op 3 3/0.000 + CDS 45350 - 46363 670 ## COG0859 ADP-heptose:LPS heptosyltransferase 53 18 Op 4 1/0.125 + CDS 46360 - 47274 750 ## COG1560 Lauroyl/myristoyl acyltransferase 54 18 Op 5 3/0.000 + CDS 47267 - 48040 617 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 55 18 Op 6 . + CDS 48021 - 49085 767 ## COG0859 ADP-heptose:LPS heptosyltransferase 56 19 Tu 1 . - CDS 49134 - 49202 69 ## - Prom 49244 - 49303 6.3 + Prom 49186 - 49245 5.5 57 20 Op 1 . + CDS 49269 - 50471 1078 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 58 20 Op 2 1/0.125 + CDS 50481 - 51338 916 ## COG0668 Small-conductance mechanosensitive channel 59 20 Op 3 . + CDS 51338 - 52561 997 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 60 20 Op 4 . + CDS 52570 - 53937 1466 ## COG1109 Phosphomannomutase 61 20 Op 5 . + CDS 53941 - 54945 841 ## COG0418 Dihydroorotase 62 20 Op 6 3/0.000 + CDS 54945 - 55445 321 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 63 20 Op 7 2/0.000 + CDS 55429 - 55998 531 ## COG0125 Thymidylate kinase 64 20 Op 8 . + CDS 56002 - 56574 405 ## COG1040 Predicted amidophosphoribosyltransferases 65 21 Tu 1 . - CDS 56571 - 57275 805 ## COG2859 Uncharacterized protein conserved in bacteria - TRNA 57314 - 57390 75.6 # Arg CCT 0 0 Predicted protein(s) >gi|197282967|gb|ABQU01000083.1| GENE 1 81 - 824 572 247 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308992|ref|ZP_04808147.1| ## NR: gi|242308992|ref|ZP_04808147.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 247 1 247 247 443 100.0 1e-123 MADVETILYKLQNALKDKHTIAYLSLKGIDNAYKAINVLQKALFSNNGEIINAEDFIEAE KDTLGKKEENIVIPSDFQDKIKNAKESLTTIGPSKKSDIKESAFECDKFAEAIFSQIREK VGEPFSGSSSFCAVPYKIRSRILVSSQFFISLIEEVSKCSRGEAIKRANYFVKYYGSKDS NPRYIYDINVTKGYYTSIYFLVENGKKFEYICVPFDRKALNIDNAKMDYYTKKETLKNIK IEQFMQF >gi|197282967|gb|ABQU01000083.1| GENE 2 833 - 1138 375 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308993|ref|ZP_04808148.1| ## NR: gi|242308993|ref|ZP_04808148.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 101 1 101 101 158 100.0 9e-38 MQKISYQRMKLLRNKNAKIIITNNIEAEALLDLTKKLDYALRILKENAGGLYDYEDVVKN INVIKELITHNSDFIEELYKKIGKDYSKPAAIKFMENKESQ >gi|197282967|gb|ABQU01000083.1| GENE 3 1135 - 1593 356 152 aa, chain + ## HITS:1 COG:RSp0841 KEGG:ns NR:ns ## COG: RSp0841 COG0741 # Protein_GI_number: 17549062 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Ralstonia solanacearum # 22 107 36 120 232 71 40.0 6e-13 MKQIIFLFFIPLFLHAKSYYVEAGEMFNVEPQLLWVIAKTESSFDAKALNKNKNGTYDIG IMQINSIHLPELKEKYNIKKEDLYNPRVNIHIGAMILKRCLDKHKGNLTNGVTCYNGRIK DNPYGKKVLEELSLALETYNIKENNNVASKND >gi|197282967|gb|ABQU01000083.1| GENE 4 1571 - 1900 456 109 aa, chain + ## HITS:1 COG:Cj0979c KEGG:ns NR:ns ## COG: Cj0979c COG1525 # Protein_GI_number: 15792306 # Func_class: L Replication, recombination and repair # Function: Micrococcal nuclease (thermonuclease) homologs # Organism: Campylobacter jejuni # 34 109 41 115 175 75 51.0 2e-14 MLHQKTIKRLEITSIITILAFIGYFFGDKVTFFNEKLTGSVYKIYDGDTITLHRDNKDYK IRFFGIDAPELKQEFGKESREHLLELCPIGSEATVSIKDKDKYGRIVEL >gi|197282967|gb|ABQU01000083.1| GENE 5 2119 - 2538 184 139 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0964 NR:ns ## KEGG: JJD26997_0964 # Name: not_defined # Def: putative thioredoxin # Organism: C.jejuni_doylei # Pathway: not_defined # 3 139 6 142 142 133 50.0 2e-30 MKKILFLLFLVEGVTFGNPKVYNDIFEGQKVALKEAKLMLYIISSSKCQHCHNLLNGINN TPHLLKLLKDDFVFIVTDLENPYSRIPNDIVFNGKTPTTYILTPTGNLIGIPIEGSIKSQ DLYTLLKGLEDYKKERLGF >gi|197282967|gb|ABQU01000083.1| GENE 6 2624 - 3799 2003 391 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239524421|gb|EEQ64287.1| 30S ribosomal protein S15 [Helicobacter pullorum MIT 98-5489] # 1 391 1 391 391 776 100 0.0 MQFVNKKELEKIPQDKRGIHKDASTKNLYLEFYPKKSGASKTFYYRYRQDNKLYTINLGK YPETSLIEARAKANELNLKLLKKEDLVLDPAKTLKEIFEEWHKIAIKDKINQDFARPLEL HIINQYGNKPIADLTKQDILKSFDKLFLENKRETIKRSYASLKNLIIYSLNREYLQATNL LNIDINTLYGKLQPKSFRAITDLDTFRDLLLAIDSYNGNLFVKTALQISPYIFLRSSTMR NLKWEYLDEKEKLLRIPASIMKAKEEFLVPLSQSVLDKILSIKDFAYPSPYMFPSEISKN KSIAENTLNYAIKRLGFGELMVYHGFRSSASTFLYENKNKHKQDSEVIELCLDHRERNKV KAVYNRSLRLEDRRILMQWWSDFIEELKKQK >gi|197282967|gb|ABQU01000083.1| GENE 7 3841 - 4875 701 344 aa, chain - ## HITS:1 COG:Cj1523c KEGG:ns NR:ns ## COG: Cj1523c COG3513 # Protein_GI_number: 15792836 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 2 340 3 317 984 265 47.0 7e-71 MKILGFDIGIASIGWAFVENGELKDCGVRIFTKAENPKTGDSLAMPRREARSVRRRLARR KGRLETLKRLLAKEWDLCYEDYIAADGELPKAFMGKNLTNPYVLRYEALQRLLSKEELVR VVLHIAKHRGYGNKNAKITKSEESKREQGKILSALATNASVIARYRTVGEYFYKEFCEVI KNPQGLNTNENCTQPKVRVLKPIRNKGGEYTNCILQEDLQRELRCIFEHQKGFGFSITQE FQDKILKIAFYQRSLKDFSHLVGKCTFYPDEPRAPKFSLSAIEFITKAKAINLLASIAKE SGEVWDKEQWRERLDSVFSAVCERGINTIPSSSHFLNIFDILYL >gi|197282967|gb|ABQU01000083.1| GENE 8 5054 - 5278 279 74 aa, chain + ## HITS:1 COG:Cj1397 KEGG:ns NR:ns ## COG: Cj1397 COG1918 # Protein_GI_number: 15792715 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein A # Organism: Campylobacter jejuni # 1 71 1 71 74 75 57.0 3e-14 MTINDLKDGESAIIKSLKVDKQLKDRFFSFGIAKSKPIKKLETSLGGSTILVELDRSCII LRTEEAKAIEVEKQ >gi|197282967|gb|ABQU01000083.1| GENE 9 5278 - 7389 2018 703 aa, chain + ## HITS:1 COG:Cj1398 KEGG:ns NR:ns ## COG: Cj1398 COG0370 # Protein_GI_number: 15792716 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Campylobacter jejuni # 3 703 2 612 613 731 57.0 0 MEKIIKIALVGQPNVGKSLLVNALCHSNMKVGNFTGVTIEKAQAKTIYKGYEFQIIDLPG TYSLYGYSEEEKITKNFIESDEYDIIINVADSTNLERNLLLSAQLLELPKKIILALNMSD EAENEGVHINQKELKNLIGIPCIQISAKTKQNLNELLDLVIQTHKQNLLPNKRIYSNEIE TEILKLEDFLKSKNDRNLQSLNLSYRDIAILLLKQDEKLFSFLHEKPIWMELSPILQESL NNLYIIYNTKSSEDIFLEDLNAFVNGLTTETLRYENKKRNHTQTIDKILINKYAGIPIFL FLMWLLFQLTFTLGDIPMGYIEEFFAFIGDGIKANVSNELIASLLADGIIGGVGAVILFL PNIIILFFGIALLETTGYMSRVAFLLDGFFHKFGLHGKSFIPLVTGFGCSVPAFMATRTL RSRKDRLLTLFIINFMSCGARLPVYVLFVGAFFPAEQAGNWLFGIYILGAILGLIMAKIL RISVFRGADEPFVMEMPKYRIPNWNLVWFSIYTKAKMYLKKAGTFILAATILIWFASTFP LQKDLQESYAQKIESATTQEAKESLEFELQEQLIENSYLGKTGQFIEPLFAPLGFDWKMS VALVSGLAAKEVVISTMGVLYSLGGEVDETSSALMETIKNTIPLKVAIGYILFIMIYNPC LAATVVFGKEAGGFKYIVYLFLMTTFVAYIVAYIGTLIAGMLL >gi|197282967|gb|ABQU01000083.1| GENE 10 7646 - 7948 196 100 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309001|ref|ZP_04808156.1| ## NR: gi|242309001|ref|ZP_04808156.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 100 1 100 100 166 100.0 6e-40 MKKLIVIKTEQASRGIKFYFSTPNHYEIKFINSRIPKAIIITQETRIISGEQNPRNRSFS CNLTQEEKAFLIKFINEDTKENLLEVKEGKLYYSYKENLE >gi|197282967|gb|ABQU01000083.1| GENE 11 7959 - 8258 388 99 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309002|ref|ZP_04808157.1| ## NR: gi|242309002|ref|ZP_04808157.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 99 1 99 99 164 100.0 1e-39 MKKSVFFILCLSGLAIAQQSNIYIYDGNAKSQAEAEWARKVEYFNYEKEACEAGRAYSCY LVGQAYQYGTGVKVSYKKSQEYYRKACEMGESTGCRFMH >gi|197282967|gb|ABQU01000083.1| GENE 12 8369 - 9997 1054 542 aa, chain - ## HITS:1 COG:jhp0786 KEGG:ns NR:ns ## COG: jhp0786 COG0286 # Protein_GI_number: 15611853 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Helicobacter pylori J99 # 109 368 211 498 528 72 27.0 2e-12 MLKEILQIFQYIQKFHKDNFEALKITLEFLLVGRNKNHLKEILAKDKEQIDERIQFHLLS YGLKATRIEAKMNRKKILRALLEIEVSIEEVERFIQAITLHKTILKLYDYATPMEVNRLV ALLLDLKNGESVYNPCCGLGSWLFSLKGRNFQYYGEDIHSKLIDIARILAVFMGFKNVHL EVADIFKDSAFGKLEANKAFCYFPIEANLNLWGFRDEALEPFIKSFSEVPFLAYTLKHFH QKAVFIVRSLLLYKACGERLRKYLIKQKLLEAIIEFPRNIFPHQMEDFSLLILSKQENKK VLFINAQNLFVKEGKYNKLIDIEMICDLYFSKQNTEISRLVAYENIYLENFKTSYYIKGQ NDKKTLNLAEFVECIYRGQRVEVKKDEVLIDCYNVGIKDFLEYGLSEEFDEFSPKSNQKR IEQLKIKPYDILLSMRGISPKVAIIGEGIGDKNILPNAGILVLRPKNKEIAKSLYVYFLS KEGFLALSKIYQDNQERIGEREIANFLLPQNFLEYQEKFNKLLLEGEQIRKHRQMIRELL GF >gi|197282967|gb|ABQU01000083.1| GENE 13 9997 - 11241 1290 414 aa, chain - ## HITS:1 COG:PA5434 KEGG:ns NR:ns ## COG: PA5434 COG0814 # Protein_GI_number: 15600627 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Pseudomonas aeruginosa # 7 414 12 417 417 369 50.0 1e-102 MFGIGNKPSVLGGTMIIAGTAIGAGMLALPTISAGMWIWWSLALMVLTWLMMLFSSQAIL EVNLNYKPGASFHTLVRDNLGKFWNLVNGLSVAFVLYILLYAYVSGGGSMVVHTFNAVFG YEPPKILSGLLFALFLSGCVWWSTYLVDRFSVIMIGGMVITFVFAMSGMLGEIKSAFILD VQNDGSSYGIFVFVALSTYLTSFCFHASVPSLVKYFGKDPLSINKCLVYGTLIALFAYIV WIVACDGNIMRSDFKSVIAAGGNVSDLIEAASSNLNGSFLLRMLDAFAFLAVATSFLGAG LGLFDYMADLCGFDDSRLGRTKTMLVTFAPPIVAGMIYPDGFLLAIGWAGLAATIWSVII PALLLRAARQRNDKQVQNYRVWGGNFTIYGLLVFGCVVGICHILFVFELLPMYQ >gi|197282967|gb|ABQU01000083.1| GENE 14 11357 - 12268 732 303 aa, chain + ## HITS:1 COG:all0783 KEGG:ns NR:ns ## COG: all0783 COG0685 # Protein_GI_number: 17228278 # Func_class: E Amino acid transport and metabolism # Function: 5,10-methylenetetrahydrofolate reductase # Organism: Nostoc sp. PCC 7120 # 42 301 46 296 309 128 30.0 1e-29 MNKIENFIQILKSNEKCFTYEFSAPPSFSLDTFFDALQQENLVSKIHAFICTDSPLAKLK HNSILASLKLQNTFNLPSITTISMRDRNTLAIQSELIGMNSLDLRLILALTGDPIRHGNQ PQAKGVFEGNSLLLLKIIQQLNQAKDINNHPIQGDFKPFYAFSVLNSYSNKKENLYKKMQ EKIQNGASAIITQPIYDLDIAQELLQWCDKINQESSTNCTLIFGFFPITSYKTALFLHNK LPGVFIPQSWLETMEKASHNNTELEIGLEKSQRLFENLCKIQAKIHLMSSNKVDIIGKIL NGR >gi|197282967|gb|ABQU01000083.1| GENE 15 12258 - 13421 678 387 aa, chain + ## HITS:1 COG:jhp1468 KEGG:ns NR:ns ## COG: jhp1468 COG0772 # Protein_GI_number: 15612533 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Helicobacter pylori J99 # 3 385 4 387 388 338 53.0 1e-92 MVDKPLFLLSASLITISIIFSYSLSSFAILYYDYNEFHFMLRQLIAGILGILLMWGISRC NPDDFILKLGFFLFFGGIVIMFIMHFLPESLATSAGGAKRWIRLPFFSLAPVEFFKIGFI VFLAWSFSRKFSLIETKSLKEEFITFLPYAFVFLIAVYLIAILQNDLGQIVLLGATLALM MIFAGSSFKLFVNLLAIAFVLFISVIITSAHRITRIKAWWAGTQDMILSFFPQSIANSLR IENLPEPYQIQHSLNAISNGGIFGEGLGNGLIKLGFLSEVHTDVILAGITEEIGFIGLFC ISLLFMAMIFRILKIANRCQNTMYYLFCSGAGIILGFSFLINAFGISGLIPIKGIAVPFL SYGGSSILASSILVGMVLSISKRAKMS >gi|197282967|gb|ABQU01000083.1| GENE 16 13475 - 14740 1344 421 aa, chain + ## HITS:1 COG:jhp0275 KEGG:ns NR:ns ## COG: jhp0275 COG0019 # Protein_GI_number: 15611345 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Helicobacter pylori J99 # 23 414 6 398 405 480 60.0 1e-135 MKNILTPNIPTLQGNFDKNILLQIAKEYQTPIFAYDFDKIEEYYHQFKSAFSGRKTLICY ALKANSNLSVVKKLASLESGADCVSLGEIKRAILAGIPPYKIIYSGVGKQEEEIKEAIKL GILFINIESKAELFKVESIAKNLNTKARISIRVNPDIDPQTHPYISTGLKENKFGIEIQE AKSLYLHAHKSEFLEPIGIHFHIGSQLTKLQPIYESAQKIAKLVHSLLALKIDIKFFDIG GGLGITYSDETTINPYDYAQSILECLRGLDLTIICEPGRFIIGNAGVFLVKVLYEKISQN KRFVIVDGAMNDLIRPSLYNAYHQIIPLTQPQGEKSPADIVGPICESGDYLGKNIELPPL KEGDVLAILSSGAYGFSMSSNYNTRPRCAEVAISQGKIKLIRKRETFEDLIALEKDLMGD F >gi|197282967|gb|ABQU01000083.1| GENE 17 14740 - 15804 1135 354 aa, chain + ## HITS:1 COG:Cj0316_2 KEGG:ns NR:ns ## COG: Cj0316_2 COG0077 # Protein_GI_number: 15791684 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydratase # Organism: Campylobacter jejuni # 84 352 1 266 273 258 52.0 2e-68 MKLQQFREEINKIDDKILELLEKRMEIVKQIGKIKMQGNTPIYRPEREKEIIDRLISKKP LLLTKNAIESIYLEIFAVSRNLELPERVAYLGPIGSYTHQAAESRFGAMCEYFSHNTITS AIKSVEESRASYAVIPIENNQNGAVGETLDLLKDTNLKIVAEIYMPIHHCFASISQKLQD IKIIYSKDIAFGQCYNFLNEHSLDHIQRIPVDSTAKAAQLASQNPQCAAICSHIAAKLYN VPVLFENIEDSAGNKTRFIIVSNFKNQSCGKDKTSIFANLTNTGKPGALYNLLYDIRDLN INMTSIQSRPTHTDDDFRYCFFIDIDGHIDDNNVSELFKRYPNELKWLGSYLKN >gi|197282967|gb|ABQU01000083.1| GENE 18 15849 - 16382 550 177 aa, chain + ## HITS:1 COG:Cj1408 KEGG:ns NR:ns ## COG: Cj1408 COG1580 # Protein_GI_number: 15792726 # Func_class: N Cell motility # Function: Flagellar basal body-associated protein # Organism: Campylobacter jejuni # 25 176 34 177 178 112 43.0 3e-25 MAEEAQKDSKLSNLKQNKMILFIIIGVVALLLIILIIVGILIFSGDKEESQPQSNQPLQS AASKSSTANPNSSLLSVGPMYPLEQFIVNLVSTGGGKRYLKTSIALEMSIAEMQPELDSK VDILRDTIITILSDKTFEEIQTTRGKQKLKEEILARINEFLVDGRIVNVFFTDFVVQ >gi|197282967|gb|ABQU01000083.1| GENE 19 16385 - 16744 220 119 aa, chain + ## HITS:1 COG:HP0808 KEGG:ns NR:ns ## COG: HP0808 COG0736 # Protein_GI_number: 15645427 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Helicobacter pylori 26695 # 4 119 2 118 119 122 59.0 1e-28 MIEIGIDLVAIARFESFIQKFGEKGLLKFLNPQEITFIKTAQNAAGFWAAKEACSKALKC GISKELGFHDILISKSPKGAPLLTLKDEKMLYFNVSYLSLSISHDSGFAIAAVVANFNN >gi|197282967|gb|ABQU01000083.1| GENE 20 16815 - 17366 287 183 aa, chain + ## HITS:1 COG:jhp1161 KEGG:ns NR:ns ## COG: jhp1161 COG0424 # Protein_GI_number: 15612226 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Helicobacter pylori J99 # 2 176 3 177 190 132 44.0 4e-31 MLRLCSSSLSRQQILKEHKIPFIQCDNNFDEETLTHTNPKNFVYNATLKKYKNALHSYGL EMPLLVADTVIDCMGNLQRKAKNKDEARLFLHAQSGNSIEILTCMILHSKDFYFLNLSQT HYDFVAFDAQDVENYLQSNQWQNKAGAVMVEGFHQKYIKKQIGNTSNAMGLHFEALKPFL ENL >gi|197282967|gb|ABQU01000083.1| GENE 21 17366 - 17563 251 65 aa, chain + ## HITS:1 COG:HP1163 KEGG:ns NR:ns ## COG: HP1163 COG3197 # Protein_GI_number: 15645777 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein, possibly involved in nitrogen fixation # Organism: Helicobacter pylori 26695 # 1 63 1 63 63 63 49.0 1e-10 MNITMVGVMLATSLVIGLLGLIAFLWGLKNEQFDDEKKMMQGVLFDSEEDLRHAANNKPN KKDKK >gi|197282967|gb|ABQU01000083.1| GENE 22 17560 - 18516 981 318 aa, chain + ## HITS:1 COG:HP1164 KEGG:ns NR:ns ## COG: HP1164 COG0492 # Protein_GI_number: 15645778 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Helicobacter pylori 26695 # 2 318 3 322 324 338 54.0 8e-93 MKEIYDIAIIGGGPGGIASAVESVILGINNVVLFEKGENHSTTIRKFYKDNKRVDKDYKG QKVELNGNIYFCDGTKESTLDLFSKIIQENAFEAHFQTEVESIKQEKEYFVIQTTQNTSI KAKFIIISIGKMGQPNKPSYPIPSSIRSLVNFNANSCQDGEKILVVGGGNSAVEYACILS ETNPTTLNYRRTEFSRINEVNKENLESCIKANKISPKLGIDIQSLEDDNGKPKVNFTDGT SETYDRIIYAIGGMAPVDFLKKCNLKLDENGIPLIDENHQSSIDKIYIAGDILFKNGGSI AAALNHGFHIVQEIKKRL >gi|197282967|gb|ABQU01000083.1| GENE 23 18594 - 18782 311 62 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239524438|gb|EEQ64304.1| 50S ribosomal protein L28 [Helicobacter pullorum MIT 98-5489] # 1 62 1 62 62 124 100 1e-27 MAKRCFFSGKGPMVGNNVSHANNKTKKRSLPNLRVVRIKLEDGTSAKVRIAASTLRTMKK RS >gi|197282967|gb|ABQU01000083.1| GENE 24 18804 - 19934 1141 376 aa, chain + ## HITS:1 COG:jhp0442 KEGG:ns NR:ns ## COG: jhp0442 COG1226 # Protein_GI_number: 15611509 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Helicobacter pylori J99 # 3 376 2 376 378 430 57.0 1e-120 MAFEKLKKLLHWEGTQKPDIDLSGLLYEQLKPFRLPFILLFLGLLLSTLGYIVITDYTLI EAFFQSSYTFTTTGFGALKESEFDALDIIYTAIVMLAGSAVLSFCVIGVIDILNRGKLIS VIKERSMIYKIARLKNHFIICYHNEYTIQLSQQFREAHIPFVVVDNNNSLEDIALKYRYP FFINEDPLEEIAMLKCHLSSARGVIALSNNIADNIAQIVSVRLYEKELGRKPYFIIANAN NNEEEEKLKKLGADCVVSPSKLFAQRVNAMATRPDMENLLERFAYQKDTPLDLEEIVVPR YSWLVLKKLKESHLREITQTSIVGITQKDGKFISMPNGDTLVTSECKLLVIGTSHGIRLT KQLVSKKDKPEELKYV >gi|197282967|gb|ABQU01000083.1| GENE 25 19927 - 21117 937 396 aa, chain + ## HITS:1 COG:MJ0186 KEGG:ns NR:ns ## COG: MJ0186 COG1364 # Protein_GI_number: 15668358 # Func_class: E Amino acid transport and metabolism # Function: N-acetylglutamate synthase (N-acetylornithine aminotransferase) # Organism: Methanococcus jannaschii # 7 396 4 402 402 270 43.0 4e-72 MFNLFPIDNGVCAPEGFYCDGVSAGLKANSQLDLAFIYADSLCDVEAIFTQNKFCAAPIM HYKEYQEGFKTNFILINSKNANALTGNEGINNIKEVLSTLQQMFPNVTNPIMSSTGTIGV QLPKEKIISAFPLFKLNTKNNQNAANAIMTTDRFNKTIAFEVFLDDGKSFRIGAICKGAG MINPSLATMLCFITTDAAIPKEDMRPLLLKASKTTFNAISVDGDTSTNDTILLLTNHKSG VYHKEAFLFALEKLMHKLATDIVRDGEGATKLVAFEIKGAKTQQEAEKCAKALSQSLLVK TALFGCDPNWGRIASTIGASGIECSPETLEIYFDDICVYSKGKILFDDINEEKATRILKQ DSFKILCDIGLGKESFIAYGCDLGYDYVKINADYRT >gi|197282967|gb|ABQU01000083.1| GENE 26 21190 - 21414 437 74 aa, chain + ## HITS:1 COG:no KEGG:CFF8240_0974 NR:ns ## KEGG: CFF8240_0974 # Name: not_defined # Def: hypothetical protein # Organism: C.fetus # Pathway: not_defined # 1 73 1 73 75 67 63.0 2e-10 MLHEYRDEISVLKQENAHFAKIFDEHNELDQKIQDISEGREYATDTQLAELKKRKLSLKD EALAMIMDYKESKK >gi|197282967|gb|ABQU01000083.1| GENE 27 21415 - 21741 279 108 aa, chain - ## HITS:1 COG:no KEGG:Bind_2158 NR:ns ## KEGG: Bind_2158 # Name: not_defined # Def: CutA1 divalent ion tolerance protein # Organism: B.indica # Pathway: not_defined # 4 96 9 101 107 63 30.0 3e-09 MGLMLLQTTTTSENAKILISRAMESGFVSCVQRMAIESYYFWEEKLNCEEEILLSFKVDR KNFKNLKVLIAKNHIYEIPEIIGISLKDVSKSYKKWHKKVIKAQKKGL >gi|197282967|gb|ABQU01000083.1| GENE 28 21745 - 22017 177 90 aa, chain - ## HITS:1 COG:no KEGG:WS1042 NR:ns ## KEGG: WS1042 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 89 1 89 103 62 37.0 7e-09 MVMIFKVITSLIIAMVWYKLTSNQETAIFFFILMLVIFFIRPISYQSPTERQEYLDKFRK SKERQMNIEQLRREEKKKAQEERDKKRSKE >gi|197282967|gb|ABQU01000083.1| GENE 29 22019 - 22834 764 271 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309020|ref|ZP_04808175.1| ## NR: gi|242309020|ref|ZP_04808175.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 271 1 271 271 514 100.0 1e-144 MDKLILWHNHFYNQSASILKENVKKLFEKLQIPIAEIWEIACENRLLPLVNEVEYYGKIL QALNNAKKQKMKLLVCDSQSLLAIKRVFEKYFMHSNFKEELNKKIGEIDILELEDAFVFA PEIVLQAFVRDNQKRTWEGFKCAFLLDRELESMVKETYIVEKFENLLGVKIYPFYKDSYD YLLHINKDMAYKMGGKDYYEMVDCGVDFIMTPNIGNFELLDGHSKKIKKNAGRDDLEVPI LYIPQVFLALFKEYNAQDLMFFKHNISPKML >gi|197282967|gb|ABQU01000083.1| GENE 30 22844 - 23509 352 221 aa, chain - ## HITS:1 COG:no KEGG:Sdel_1183 NR:ns ## KEGG: Sdel_1183 # Name: not_defined # Def: hypothetical protein # Organism: S.deleyianum # Pathway: not_defined # 1 201 1 205 225 88 29.0 2e-16 MEKRLKLKLFRFNVERDYLPYFAKMQVKIDEEDSLTCLLEIVQKNILEYSYKAYGFKING VVVFDFKLTIGELVRKFGLEWKIEPLNSSLALYDLVINEEPFLKKMEALEEFGLKREREF LISFLPFAYATPLSVECEEYCGEVFFILAYFLYQEEENTEILEFISKDYQNVLMALNLET YIFPKYDTINHYLWELKKIVLNKCQTREIQTIKKRLLEHIA >gi|197282967|gb|ABQU01000083.1| GENE 31 23541 - 24020 410 159 aa, chain - ## HITS:1 COG:no KEGG:WS1039 NR:ns ## KEGG: WS1039 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 3 159 2 156 156 155 50.0 5e-37 MGLENLLYDKKFRGMQKTHCYEILKYLIQKKVNFSIVCNVSCVKFEPELPREIREAFSDL TVFILAGYTFESLEMDEKNLYFEAGFGEENLGSFVTTPLESIVQILLPNDEDIRSDFCIY INLLATFIEAKEGIEKEDDGVNSSMRALLSNPKNHKFKK >gi|197282967|gb|ABQU01000083.1| GENE 32 24031 - 25749 1506 572 aa, chain - ## HITS:1 COG:jhp0422 KEGG:ns NR:ns ## COG: jhp0422 COG1164 # Protein_GI_number: 15611489 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Helicobacter pylori J99 # 3 572 5 573 578 575 53.0 1e-164 MDKWNLKPLFESKEILENNIQENIKNSQKFEDKYKNQMASLQPLEFEKMLKEYERICENL SCIMTYAYLCFAANTKEGAFLSKCEMEVNKAQEKLLFFEIEFNALPNNIQSSFIKQCKKY SYFLELLAKNAKHQLTLPEEKVLLKMQPVGVDSFKRLFDEHLSALRFKFQDKEVSEEEVL SLLYDKNRETRKEAAQSLSETLSKNLELLAYIYNVVRKDLKISAELRGYSNLEESRHIDN QITQKSVDIMVQTINDSVGVVEEYYKLKTQLLGLETLYDYDRYAPLLCSEDSEFSYEESK KLVLETFLEFSPRFYEIAKCAFDEGWIDSHPRENKRGGAFSHGAVPSVHPYLMLNHTNRR RDVFTMAHELGHTIHQYLSYGVDYLNADTPLTTAETASVFAEMLLFEKMKNMLSREEKIA LYASKLEDIFATLFRQNVFTNFERRVHQKEGELSVDEFSQIWQEENQKMFGKSVVLTQNY SCWWSYIPHFIHTPFYCYAYSYGQLLVMALFGVYRKEGQDFVNKYEKFLSLGGSQSPREL VGIFGLDIEDDDFWKIGICEVKRLMQGLKEIL >gi|197282967|gb|ABQU01000083.1| GENE 33 25942 - 27582 1753 546 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 1 546 1 547 547 679 64 0.0 MASKEINFSDSARNRLFEGVKQLSDAVKVTMGPRGRNVLIQKSFGAPSITKDGVSVAKEI ELADPIANMGAQLVKEVASKTADAAGDGTTTATVLAYSIFKEGLRNITAGANPIEVKRGM DKAAEAITEELKKISKPVAGKKEIAQVATISANSDAKVGELIAEAMEKVGKDGVITVEEA KGINDELSVVEGMQFDRGYLSPYFVTNSDKMEAELEHPYILLTDKKITSMKDILPLLEST MKSGKPLLIIAEDIEGEALTTLVVNKLRGVLNVAAVKAPGFGDRRKEMLKDIATLTGGEV ISEELGKTLENASIEDLGQAARIVIDKDNTTIVDGAGSKDGVNARIAQIKTQIESTTSDY DREKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIIIGGGAALI RAAAKVNLSLEGDEKIGYEIIKRAISAPIKQIATNAGFDDGVVVNNVEQDSNVNNGFDAS SGKYVDMFEAGIIDPLKVARIALQNAVSVSSLLLTTEATVHEIKEDKPAMPDMSGMGGMG GMGGMM >gi|197282967|gb|ABQU01000083.1| GENE 34 27604 - 27864 448 86 aa, chain - ## HITS:1 COG:HP0011 KEGG:ns NR:ns ## COG: HP0011 COG0234 # Protein_GI_number: 15644644 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Helicobacter pylori 26695 # 1 86 1 90 118 117 63.0 7e-27 MNFKPLGERVLVERLEEDTKTASGIIIPDNAKEKPLMGVVKAIGSEVKDVKVNDKVVFGK YSGTEVKLEGTEYLILKLEDVLGVIA >gi|197282967|gb|ABQU01000083.1| GENE 35 28143 - 29321 1296 392 aa, chain + ## HITS:1 COG:jhp0615 KEGG:ns NR:ns ## COG: jhp0615 COG0436 # Protein_GI_number: 15611682 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Helicobacter pylori J99 # 2 386 3 388 390 511 66.0 1e-145 MYATRVTNLSESITIAISTLARELKAQGKDILSFSAGEPDFDTPQIIKDEAIKALQNGFT KYTAVAGIPELLQAISDKLLRENHLNYTPQEIVVNSGAKHSLFNIFQALIDKDDEVIIPS PYWVTYPELVTYSGGKNVFIETTQENNFKITPKQLKAAITPKTKMLVLTTPSNPTGMVYS KSELESIAEILKNTNIWVISDEIYEKLVYDGDFTSCGSISQDMLERTITINGLSKAVAMT GWRMGYLATKDKKLRQLIINLQSQCISNINSITQKASIPALDGRTEAEILKMQKAFKERR DIACKLFNEIEGLNVSIPDGAFYLFVNCSTINPDSMAFSKALLEKEGVAVVPGIGFGMDG YFRFSFATDLQSIKAGIQRISNFCKANKPKQD >gi|197282967|gb|ABQU01000083.1| GENE 36 29504 - 29827 383 107 aa, chain - ## HITS:1 COG:SMc01178 KEGG:ns NR:ns ## COG: SMc01178 COG2076 # Protein_GI_number: 15965368 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Sinorhizobium meliloti # 6 107 8 108 108 73 50.0 9e-14 MFNIYFFYVVLAAFLDIVANLALNKSNGFRNLKWGLFSIGLVWLAFYLLALSVENGMRLA IAYTLWGSVGILGTTLGGWYFFGQKLKPIGWIGIFVVIVAVIVLKTA >gi|197282967|gb|ABQU01000083.1| GENE 37 29820 - 30179 362 119 aa, chain - ## HITS:1 COG:SMc01179 KEGG:ns NR:ns ## COG: SMc01179 COG2076 # Protein_GI_number: 15965367 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Sinorhizobium meliloti # 1 113 1 113 114 76 40.0 1e-14 MLKARVFLLLAIFCEVFGVSVMNYAGGENKILIYGVMFLMLGISYYFMSLAILRISVGTA YAIWEILGLSLITIISVFIFENHLNLQEYIGLGLALLGIILVNLGEEHSSQNAKEERNV >gi|197282967|gb|ABQU01000083.1| GENE 38 30392 - 31417 854 341 aa, chain + ## HITS:1 COG:HP0283 KEGG:ns NR:ns ## COG: HP0283 COG0337 # Protein_GI_number: 15644911 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Helicobacter pylori 26695 # 7 339 12 342 343 375 57.0 1e-104 MKITLPNYTISFGKLPKIQCDKKILIVTNPKIAGLHLQTLLKNIHAKEVYCICIQDGESY KNFQSIELILEAAFNHRLDRNSLMIAFGGGVIGDMVGFAAGIFMRGIDFIQIPTTLLAQV DSSVGGKTGINNHFGKNLIGLFHQPKAVYIDTDFLQTLPSREFHAGIAEIIKMAVCFDKN LLKELQNANTLDYNTLLQIIYQAVSIKAKVVAEDEKEKGIRAALNYGHTFGHIIERESGY GYYLHGEAVSIGIVMANTLALKLKLITKQEFDLILEILHKFKLPTTYTIQNTESFYQAFF LDKKSQNDKITFILPNGIGNFIFKNDIPKSTLMEVLEEFRQ >gi|197282967|gb|ABQU01000083.1| GENE 39 31414 - 33072 1551 552 aa, chain + ## HITS:1 COG:jhp0269_2 KEGG:ns NR:ns ## COG: jhp0269_2 COG0668 # Protein_GI_number: 15611339 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Helicobacter pylori J99 # 226 532 1 307 326 359 57.0 9e-99 MRFVHLLLFFILFQNILLADITSEIKQIKQLESQIQNINNFLNNPNNLWIKKYSNYKSYQ QISFNISKAQEEIQKLQNLPKTIENQTQLNNLQRNLIVLQNQINLLGNYKDTPFIELIEP KKLEEAPNVTNALLIINALSYLKKNNEELKILQRNYENLQNNLDKLQQKEKFLQELLNLY QNSNNKNKLSQICNTDYCLFNSTEAISQELKNNSEMLRVLENTKNIFTTTLEIFSKEVEE INTRLTTQIKAQIIKSVYIIVAILILLGVAFFIKLGVRKYIHDNERIYTTNKIINFLNIT LIILILLFAYLDNVSYLVTVLGFASAGLAIAMKDLFMSILGWIVIVVGGAVHAGDRIKVI KEGAVYVGDVLDISILRITLYEDITLTTYTENRRAGRVIFIPNNFVFTTMFSNYTHGGIK TVWDGIDFTITFDSDHSRACHIARECAKKYAKGYTESTRKQFNKLRDRYTLKNTNVEPRV FSLLEQNGIRISVWYLTNAYATLALRSTISAEIIDLILKEPNIKIAYPSTTVYEGSKLPS TMPKTDGSIPIT >gi|197282967|gb|ABQU01000083.1| GENE 40 33085 - 34359 1085 424 aa, chain + ## HITS:1 COG:Cj1006c KEGG:ns NR:ns ## COG: Cj1006c COG0621 # Protein_GI_number: 15792333 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 2-methylthioadenine synthetase # Organism: Campylobacter jejuni # 4 424 2 414 416 413 48.0 1e-115 MQNKPRVFFKTFGCRTNLFDTQVMINSLIDFIQTPYEEDSDIIVINSCTVTNGADSGVRN YVNRLQNEGKKIFFTGCGVKTQGKDLLQKGLIFGAFGHSYKEDINKILKQSQSFYLEGDL ESLDKNIITDFVGKSRAFIKIQEGCDFACSYCIIPSVRGKARSFPKEKIINQIKKLTQNG FSEFILTGTNMGSWGKDLGENITKLLESICAIPQVKRLRLGSLEPSQITQDFLDFLDNPK IEKHLHIALQHTSPFMLKLMNRQNTFEKDLELFHTIAQKGFALGSDFIVGHPQESQKIWE EAFKNFEMLPLTHLHSFIYSPRSNTLSATLKETIPGNIARERKKNIEEKIAQNNFAFRQN LAHTKTPLNILIEDCKFENNTYTSLGFDEYYNKIQISSKNPIQKDSWIEINHFIPKMDKN YAEI >gi|197282967|gb|ABQU01000083.1| GENE 41 34346 - 36031 779 561 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 160 506 153 517 636 304 45 7e-82 MQKSKTLYFGIFALLLCAIVFSVLIFKDSATLISTTHLEKITQNSLPNNAKIKGEYLYFD INGQSYKIAKDAIDLKQFAQKIPLEIKQESGFITDLIINIFAIFLVVILLFLFLVLFNRT KLQQSLTQEIKKTPNYQQQAKMIANEAFMLHNIKPIHSNLTFDDVAGIDEAKEELKEIVD YLKFPKKYQDFGIKLPRGVLLVGPPGVGKTLIAKALAGEAKVPFFYQSGASFVQIYAGMG AKRVHDLFTKAKLNVPAIIFIDEIDAVGKARGGMRNDERETTLNQLLTEMDGFEDSNGII VIGATNNIESMDKALLRSGRFDRRIFVELPNLQERIKILKVHTKNKKCDFDYEEVARLCI GFSGAAIASLINEAALCAIKRDSKIIQKEDILNVRDKVMIGIRKKLSFSEKEKEILAYYQ AAKAFSAYWFEVPFEKITLMSDGLKQLDKEFLSKNELENQIKIYLSGIAALELLYSEHYS HSKNDLNEAKNLAYKMVETYGMGEFLLGREEDIVKILETCKNERFNFFKNYRNHLEKIQK QLLINERLEYNEIGSLIHGEF >gi|197282967|gb|ABQU01000083.1| GENE 42 36018 - 36326 112 102 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309033|ref|ZP_04808188.1| ## NR: gi|242309033|ref|ZP_04808188.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 102 1 102 102 187 100.0 1e-46 MGNFKVFGECEIPSFIPKSLLCDFSVVGMQQDSKYAINYTLSSLKQHKRIQRLILIFPHS LPTSCLTEIQKFHCKIYFFLQKDSKSFCDCKSLSQFGLVIAL >gi|197282967|gb|ABQU01000083.1| GENE 43 36327 - 36662 473 111 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309034|ref|ZP_04808189.1| ## NR: gi|242309034|ref|ZP_04808189.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 111 1 111 111 221 100.0 2e-56 MKLRKSLMGVIMAGLLSVPALADMDINGQIVSVNDAKKTITIAGPSGNVEIQVFPYTELK GDDCGVFGAWDTHEKFTALKVGMFVKIDAIPQAQGILGAKEIEWQCGRKAY >gi|197282967|gb|ABQU01000083.1| GENE 44 36700 - 36891 104 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYLCVFFVKILTSFITLNFHILIITIQNPKKYMLEFQKYYIRGSFEKKYYPTKHLNVSPS CRI >gi|197282967|gb|ABQU01000083.1| GENE 45 36833 - 37786 392 317 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 9 308 37 345 353 155 33 5e-37 MKKNIIQPNTLMLAPLAGYSDLPFREVVKKFGADITVSEMISVHALAFKNKKTIKMIEKS PLENPFALQIAGNDFGIIQKAVEFLNEFKNEIQILDLNCGCPAPKVSSHGSGSSLLKDLN KLVKILQLLRETSVFPYLSVKVRLGFDKKIPLEIANALNDSPIDYVVVHGRTKSDGYKKD KIDYDSIRLIKQNIQHPLIANGEITSPQIAKKVQELTGAEGVMIGRAAIEKPWIFTQIKN NLEESIELRKQVALEHFDRTISFRGDYGAIMFRKNLHAYSKGLKGASDFRNKVNAITNPA LMREEIFNFFTHSSFEN >gi|197282967|gb|ABQU01000083.1| GENE 46 37783 - 39372 1600 529 aa, chain - ## HITS:1 COG:jhp0095 KEGG:ns NR:ns ## COG: jhp0095 COG0840 # Protein_GI_number: 15611165 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Helicobacter pylori J99 # 146 528 182 563 564 159 30.0 2e-38 MFRTIRSRIIAIIVVFLAMLLGLVYFNLEKGFDDIAKSSSTGELNKLNAMLFEGLKVAMN TGDPLVIGGFIEGAKKVPGIVNMEVFPSKEVIELMGFNKTFTQKDEILKVFESKQEDIRV YNNEKDRGYLMAKPIIAEENCLMCHATSQLGDVLGVAEMQISSQSLIKNANTIKAKIVIW MAVVGVIALALLLLLINRWVFNPISRLSNIAYDLSQGDGDLTKRLPTRNRNEISKANSYI NDFIQKIANMVLNAKDLSHQNIAQANRLFIASKEINERVGKSAEVIEESTKLGKNIELLL NESMELVQKSTKNIQVTTKELLQTKELLIKVANDVQENVSVEHEIADKLSVSAQETDKIK GVLTIISEIADQTSLLALNANIEAARAGEAGRGFAVVADEVRKLVERTQKSLGEINAVVN MMIQSINDSNSAMNDNVQNITKVSDSSMESTQILENNVKMLEISVQDSLEILQKMNELFS AVNEILEQVGKVENLTQENSKSVDSINEITNEISQKANNLNQQLDSFKC >gi|197282967|gb|ABQU01000083.1| GENE 47 39503 - 40705 950 400 aa, chain - ## HITS:1 COG:Cj1492c_2 KEGG:ns NR:ns ## COG: Cj1492c_2 COG0642 # Protein_GI_number: 15792807 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Campylobacter jejuni # 171 397 6 221 226 87 32.0 5e-17 MQRNKKIQDEELMVDNQERIQGFNQELAKQVEYEIAQRMFSDYFSNYLFESSLNPIVIIR DEDFKVIKSNSGALEIFGKEIVGLDFIELFSNKKNKESILEGIYKARESKKRQSFKMQLI GKNNQSLSVIVSISLFYYMQKVDLCFTFVDISDIVNLEKELNDKRAMLAQKSKMEEMGKM LGNIAHQWKQPLNALYLLCQNFKEMNKFGEINAENIEKYINIMLRQIQFMSKTIEEFREF YNPSKAKEEVCVYQEIKNILELFYRLVDKRISIELSSKDEKMQIFASKNEFWQIIIVLID NALEAIKTRIQKGKIKEGNIKITCQNKQGMCIIKVGDNGGGICAEVANRIFETYFTTKEN GNGIGLSMVKMILEKMRGDITFANHKEGVEFEVKIPLHRG >gi|197282967|gb|ABQU01000083.1| GENE 48 40899 - 42947 1614 682 aa, chain + ## HITS:1 COG:Cj1234 KEGG:ns NR:ns ## COG: Cj1234 COG0751 # Protein_GI_number: 15792558 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Campylobacter jejuni # 3 682 2 664 664 573 46.0 1e-163 MTTSFLLEIGTQELPAIPLLAEIPNIKQKLSKILQNHRLLCDFDFYYTPRRLVIIANQFP TSQSPQVLEFFGPPTTIAYKDGNPTQAALSFFKKCGITQEEASTITKDNKEILYFKKESP KAPAQDLLQTITKEFLESLNFGKTMRWGDQKESFIRPISWILCLLNNTPISLNLYGVVSQ NQTFIHRNISFAPQEVTSIDNYFEILKRGMVILNQEDRRTKILQEIQEIQSQKNIKVEID ENLLEEIVCITEYPTALFGEFSERFLELPAPCIITSMKVNQRYFATYKGENLYNGFIVVS NSLAQDSNAIIQGNIKVLRARLEDALFFYHNDLKNGFMPEKLKNVTFVEGLGSMWDKTQR ERQIIKLIAPLFTKNLEKENQDIGLTLEILDQASMFSKADLMSEMVYEFTELQGIMGYYY ANALGYDSKVALAIKEQYLPNSEESPLPSNLISAFVALAYKLDNLFALFSIHKIPSGSRD PFALRRAAIGIIKIILHFNLSFDLQKISSLLSPLYKPFDLQQLENFILERMDSMFDYNPS LLRAILATNEKNILQIYQKLDALNSVLKNADKNLLMQTFKRVANITKEVNLSSSLAIKQD KLLATEEIELHKAFCLYEEKSPTLNYQEQLQMLLDLNPLLSRFFDKVLVNAPDEDFRNNR KNLIARIYQAFLNIADIREISF >gi|197282967|gb|ABQU01000083.1| GENE 49 42957 - 43559 495 200 aa, chain + ## HITS:1 COG:Cj0498 KEGG:ns NR:ns ## COG: Cj0498 COG0134 # Protein_GI_number: 15791862 # Func_class: E Amino acid transport and metabolism # Function: Indole-3-glycerol phosphate synthase # Organism: Campylobacter jejuni # 5 184 9 218 258 106 35.0 3e-23 MDLTQLKKQIELKKQNYPQEWLGRSLAYTPYQPRPIKEILTKTKQYYPKNIYSIPNTKDF LEFSQNKEKEASCFLLDILENLTFVRRYVNVPLIFNYPIIDTYQILESLVFGADCIILTP SILSQKNLKELSDFAIKIGLESIFTINSKEDLSKAIFAKADILNLQNNSNLIPLIPQNKI ILAQKNPQKIQGIDTYIEDF >gi|197282967|gb|ABQU01000083.1| GENE 50 43648 - 43899 377 83 aa, chain + ## HITS:1 COG:HP0277 KEGG:ns NR:ns ## COG: HP0277 COG1145 # Protein_GI_number: 15644905 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Helicobacter pylori 26695 # 1 83 1 84 84 98 71.0 3e-21 MSLMINEKCIACDACREECPNEAIEEGDPYYIIDPERCTECYGFYDEPACLSVCPVDAIV SDPDNIESLEELKFKYSQLHKED >gi|197282967|gb|ABQU01000083.1| GENE 51 43899 - 45356 1067 485 aa, chain + ## HITS:1 COG:jhp0263 KEGG:ns NR:ns ## COG: jhp0263 COG0248 # Protein_GI_number: 15611333 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Helicobacter pylori J99 # 1 477 1 476 484 422 49.0 1e-117 MAKITAIIDIGSNSARMAIFEKTSHFGFHLLYETKSKVRISESTYENNGFLQPEPMQRAI NALQDFLWIAKLHKARKIICVATSALRDAPNKNIFLQEARKIGLNIKVISGEEEAYFGAL AALNLLPYKEGITIDIGGGSTECALIQNHKIIDKISLNLGTIRLKELFFDKGDYQGAHAF VLANLNTLPNHFKNPKIFGIGGTARALSKAIQKQINYPLNTLHAFEYPFKDYCGFFKTIY TSEQKDLLKLNIKEERLDSIQGGALIFHLALNLFEAKTIITSGVGVREGVFLHDLLRHHN QHFPPNFNPSVRNLKDRFIKYPRHSKIIKKLANQLFEIQVSLKLLDFSYKKHLNIAAELC NIGIALNFYEKNHHGNYLLFNALNYALTHKDRLIIATLIRYNNKKIPEDLPYKQLLPPIE VLQILSFFVALAEILSYNPQPESFVFNCLKDENYTLEIHHTNFSYLTKEKLKKLTLPKFF RLKLC >gi|197282967|gb|ABQU01000083.1| GENE 52 45350 - 46363 670 337 aa, chain + ## HITS:1 COG:jhp0264 KEGG:ns NR:ns ## COG: jhp0264 COG0859 # Protein_GI_number: 15611334 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Helicobacter pylori J99 # 5 336 1 335 336 239 44.0 4e-63 MLKPIKVAFIRLTAMGDIIHSASILPLLHQKLSQTHNPTFHWYVDSSFKEILESSPFVDK LIAIPLKQSIQQKSFKNLYLIYKTLKSESYDIVIDLQGLIKSAIVGKILRSKKYVGFDFK STKESLAALFYTQKIHIPYHEHILLRNATLAFNALNLPTPNLQTLFNPKPFLSFNPALTP QLPKNSKNILFVLETSKPNKTYPKALFLELVKLFNAIGISPILLTHKTTINDSSLHFYHF TNLSLNAIKALLAQMDLIIGGDTGITHLAWALQKPSITLFGATPPKRFHLQTLINLYLVA TPDNTNKKSYDKKNFSIQTIPPQEIFNLAKSLLERKI >gi|197282967|gb|ABQU01000083.1| GENE 53 46360 - 47274 750 304 aa, chain + ## HITS:1 COG:jhp0265 KEGG:ns NR:ns ## COG: jhp0265 COG1560 # Protein_GI_number: 15611335 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lauroyl/myristoyl acyltransferase # Organism: Helicobacter pylori J99 # 9 299 35 327 328 170 32.0 4e-42 MKKLLLFSFLNLLGYFFLYMPHFLRLGFAKLIALLLFLLDKRRKFDLLANLDFAYNNTLS KEQKKEILKTNYLNLVYNSISFFMLAVSTKERILKTIHIDKPEIIQNLLDNHTNIVFVTA HFGNWEYTTPAFSCYFNHRITAVARMTPYPLINEYLIQVRSKFNIHILDKKGAAIPLAKA LKKDGVVGIVTDQNTANKEGELVNFFGKKVRHTPIASLLARKFDAKIIHFIAYYSKDYKK ILIKILPPIEFQKTQNAQEDIHNLTQIQSDILEQIIKENPKEWLWFHKKFKNQYEEIYKG HSNE >gi|197282967|gb|ABQU01000083.1| GENE 54 47267 - 48040 617 257 aa, chain + ## HITS:1 COG:Cj1135 KEGG:ns NR:ns ## COG: Cj1135 COG0463 # Protein_GI_number: 15792460 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Campylobacter jejuni # 1 249 3 253 515 193 43.0 3e-49 MNKISAVILTKNSQRLLFEVLKSLRELDEVIILDNGSNDDTLKIAQSFANVKICKHDFIG FGKLKQLGSKLAKNDWILSIDSDEIASKDLIDEILHYPLKNDFCYSYDVKNYFNGRHIRS CGWYPDRFCGIYNRKNADFDDSEVHEKIVALNSELKVIPLKGYISHFPYANTNDFLNKMQ KYTTLYAKDFCNKKQSSPLKALVHSLWCFIKNYFFQKGFLEGYEGFVIASYNAQTAFWKY IKLYEANKKVKYENSNH >gi|197282967|gb|ABQU01000083.1| GENE 55 48021 - 49085 767 354 aa, chain + ## HITS:1 COG:ECs4507 KEGG:ns NR:ns ## COG: ECs4507 COG0859 # Protein_GI_number: 15833761 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Escherichia coli O157:H7 # 2 287 7 303 352 116 28.0 7e-26 MKILIIKLRNIGDVLLISPLFYNLKKYYGDSCILDVLVNAGTEKILQTQYLNQIHTLKRN PNKLQRIYDELALLKAIKKEKYDMVIGLTNGERSAFLAFWSGAKIRVGFPPNSFWSKNLY THKLTPKRQHNLEDNLEALRILNIPILSKKVLAPIPQKTTNLNNLPPHFIHLHFFSRLFF KCLDDSFCAKIIDTITQTYHIPCVLTAAKDSRESKKLQNILKLCHSKPLYFDGTLTLPEV SLLNSKALAFVGVDTGIMHLSAANNIPTFAFFGPSVVASWGPWDNDLDSSTYNKQNGIQQ MGKHFVYQEDFDCIPCGRTGCNDTKISDCLLSRLNQQKALSYLLDFLNNIIRHH >gi|197282967|gb|ABQU01000083.1| GENE 56 49134 - 49202 69 22 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRVSMFKMLEILQSCMDRIVLN >gi|197282967|gb|ABQU01000083.1| GENE 57 49269 - 50471 1078 400 aa, chain + ## HITS:1 COG:Cj1195c KEGG:ns NR:ns ## COG: Cj1195c COG0044 # Protein_GI_number: 15792519 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Campylobacter jejuni # 1 400 1 390 392 221 37.0 2e-57 MLIKGAMICDANGEYKGDIRIENEKITEVERNILPQENEEIFQAEGMTILPSAIDLNTRI QNFNKENLLKLSSKAALGGIGLATLIPESEDSTNTELAIELLNALKDTFQAQILGLVQNT NKNISTLHKKGAKGIYAKSNENGNSLRMACEFALMLDVPIFFDCEDESLSANGVMNESEL SGKLGLSGITELSETKEVAMISELVHFMKIKAVFNAIASTRSIEILQTTKKTHPNIFIQT SIHHLMLTENLCNHYNTLAKIKPPLKSEKTRTKLLNHLKAMEIDLLTSLQSPYSLSQKDL PFDEAAFGIDMIDYFVPMCYTLLVKNSHMSLTELSKILSLNPAQILGLKDYGLIQKGYYA NLIVLDTKENQVIDNKESPYYDWIFTGKIKGHFIKGKKIF >gi|197282967|gb|ABQU01000083.1| GENE 58 50481 - 51338 916 285 aa, chain + ## HITS:1 COG:VC0480 KEGG:ns NR:ns ## COG: VC0480 COG0668 # Protein_GI_number: 15640507 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Vibrio cholerae # 21 274 31 284 287 184 37.0 2e-46 MNAKIEEKLLLLMDKFFEWAINFTPHLISAILILLFGYYLARILSKYTSKAIIKATKDET LGVFLKNVVFAGILLLTFITALSNLGVKTTSIIAVLGTAGLAIALSLKDSLSNLASGIIL VVLRRFNRGDVISVNSMVGKVDSINLFETKLTTLDNQVIIMPNSLLVSTPIINININPTR RMDLIFGIDYGSDIAKAKEILEEIFNEDSLVLKDPAPVIGVNALNASSVDLLVRFWVNTA DYFQANITLPQKVKATFEQKGIEIPYNKLDININPTQTPLLRGDK >gi|197282967|gb|ABQU01000083.1| GENE 59 51338 - 52561 997 407 aa, chain + ## HITS:1 COG:Cj0067 KEGG:ns NR:ns ## COG: Cj0067 COG0402 # Protein_GI_number: 15791459 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Campylobacter jejuni # 1 405 1 406 409 255 40.0 1e-67 MYLIGADYLLLCNEDFSIIKNGGIYFNENEILEIDTYENLQNKPAKSQKYYQNCVITPAL TNLHIHLEFSQNEGSLKFGNFGKWLDSVIENRESLMDSSLQSQMQNTIQTLLQSGVGFVG AISSYGHDLEALANSPLRVLYFNEAIGSKVEALDMLYQNLLARLQDSQQFSSHHFFPALA IHSPYSVHSKMLQKVLNLAKTQSLPLSVHFLESKEEREWLETKKGYFQGFFERFFHTKMQ PFYTISDFLNSFRGLKPYFVHCLEATHKDLEMIAKIQGKIISCPKSNRLLNNKILDLNLC KQSQIHPIFATDGKSSNDSLSLLDELRTALYAYMDYDLESLAEDLLLGVTYYAHKDNPLG IKAGSLKKGFLPDFAVFKTKAKEQLALMLLLYTKKAEALYIGGKQII >gi|197282967|gb|ABQU01000083.1| GENE 60 52570 - 53937 1466 455 aa, chain + ## HITS:1 COG:HP1275 KEGG:ns NR:ns ## COG: HP1275 COG1109 # Protein_GI_number: 15645889 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Helicobacter pylori 26695 # 4 451 3 456 459 479 53.0 1e-135 MEKLAIFREYDIRGIYNQDLTEENVIKIGFLIGEELKKRGGKTLGIGYDARVHSEIIFQW LCSGIEASGIITYNLGQIPTPVGYFALFTDFDGLKLDGSIMITGSHNPPQYNGFKITLLK EPFFGKDIYQLEQKFYALDSINTKPANPKKLNVLEKYIEFLTKEFQSLKGLKIPISIDCG NGIAGVGIAEILKRLELHFEGLYLNPDGTFPNHHPDPSEEKNLKDIKALVTKNGGIGFAF DGDGDRLAVIKENKVYKGDELAIIFAQKIPNPIIIGEVKCSLNMFESINKIGKAIMYKTG HSNLKVKLKETNAHLAFEVSGHIFFNDRYFGFDDAIYAALRVLELIKEDGLEFDRILQTL PKLYSTDEIKIPTTENQKFAIIQELQQILKNPPANFPKIVEIIDIDGLRVIFEEGWGLIR ASNTTPMLITRFEAKSEYAKETYQKALLDLLNFKG >gi|197282967|gb|ABQU01000083.1| GENE 61 53941 - 54945 841 334 aa, chain + ## HITS:1 COG:HP0581 KEGG:ns NR:ns ## COG: HP0581 COG0418 # Protein_GI_number: 15645206 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase # Organism: Helicobacter pylori 26695 # 3 333 2 335 339 356 55.0 3e-98 MDQITLQSPFDMHLHLRDGEILQNIAQHTAKSFSYALIMPNLNPPILDTKSALAYQQRIL QATQGGDFTPIMSLYLNENLGLDDLQEAKDNGIFILKLYPKGATTGSENGVSEILSDKIL EILEIAQNLGMILSIHGETNGFVLDREVEFHSIFEYLAKNFPKLKIIFEHLSDRRSIPLV EKYDNLFATLTLHHILLSLDDVIGGMLNPHYFCKPILKTKKDQESLLQTALQAHQKFSFG SDSAPHLKSNKESQKGSAGIFSAPILLQALTQTFEAHNALENLESFISINASKIYGLTRT SKQITLTKKPFQVPQEYAGIVPMFAGQTLQWSLA >gi|197282967|gb|ABQU01000083.1| GENE 62 54945 - 55445 321 166 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 3 159 4 156 164 128 40 8e-29 MSKIAIYPGTFDPITNGHLDIVQRACKLFDGLIIAVAKSENKKPLFSQEQRIEMAKLAIK ELQLSFPSLYVYGFDNLVADFAKEQNSNILIRGLRAVSDFEYELQMGYANASLNPKLETI YLMPSLQNAFISSSVVRSILSHGGEIKHLTPKSVSNFIKESNVCSH >gi|197282967|gb|ABQU01000083.1| GENE 63 55429 - 55998 531 189 aa, chain + ## HITS:1 COG:Cj0766c KEGG:ns NR:ns ## COG: Cj0766c COG0125 # Protein_GI_number: 15792104 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Campylobacter jejuni # 1 188 1 192 192 163 51.0 2e-40 MYVVIEGIDTSGKSTQIQELKLALQEAIFTFEPGATPLGKKLRKILLEDSIELDSRTEML LFLADRAQHTHEILKANPDKLIISDRSLISGMAYAKDFDFETLKAFNLFATQGILPQKVI FLELQKEDLQQRLQSKNEDKIEQRGLEYLLELQQRTKAIIKKLQLPYISINANLPKTTIT QQIINFIKE >gi|197282967|gb|ABQU01000083.1| GENE 64 56002 - 56574 405 190 aa, chain + ## HITS:1 COG:HP1473 KEGG:ns NR:ns ## COG: HP1473 COG1040 # Protein_GI_number: 15646082 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Helicobacter pylori 26695 # 1 188 1 189 191 145 45.0 3e-35 MRCLLCGNLTFFTLCKACFEDIKIQPKIRKIDNLKVYSFYDYQDIEYLLHAKYHIIGSKI YKILTSKINLYLKEILNQPLQAYGIGIDDKISQKGYAHNAIFLKNLKSLGITPLYHTLLA KNPVSYAGKDLKFRQNNPRNFYLTQNVEKKEIILIDDIITTGSTLKEAQKYLYANGANVL MAFVLSDAKY >gi|197282967|gb|ABQU01000083.1| GENE 65 56571 - 57275 805 234 aa, chain - ## HITS:1 COG:Cj0034c KEGG:ns NR:ns ## COG: Cj0034c COG2859 # Protein_GI_number: 15791433 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 3 234 2 233 233 258 57.0 6e-69 MSKISVTILGIFFVVCSIVLGYGFMQGIMAFKSMDRSVVVKGLSEREVQADVMIFPVSFT RANNDLNLLYKDLAEDSKKILMFLEKEGIKKEEITLKAPRITDKVGNSYSEVQNIAYRYN GQGEVLVYTKEVDLGRKILEKIAELGKDGLIVKVEDYEIEYLYTKLNDIKPQMIEEATFN AREVAKKFAQDSQSSLGKIKKASQGQFSISNRDRNTSHIKKVRVVSTIEYYLKD Prediction of potential genes in microbial genomes Time: Tue May 24 02:57:47 2011 Seq name: gi|197282966|gb|ABQU01000084.1| Helicobacter pullorum MIT 98-5489 cont2.84, whole genome shotgun sequence Length of sequence - 15811 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 7, operones - 5 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 6 - 34 1.0 1 1 Tu 1 . - CDS 42 - 332 493 ## COG0776 Bacterial nucleoid DNA-binding protein - Prom 362 - 421 9.9 + Prom 476 - 535 10.2 2 2 Op 1 . + CDS 647 - 1645 1090 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 3 2 Op 2 . + CDS 1642 - 2910 752 ## COG0166 Glucose-6-phosphate isomerase + Prom 2912 - 2971 10.7 4 3 Op 1 21/0.000 + CDS 2992 - 4011 1114 ## COG0280 Phosphotransacetylase 5 3 Op 2 . + CDS 4012 - 5223 1287 ## COG0282 Acetate kinase + Term 5426 - 5463 0.2 6 4 Op 1 2/0.000 - CDS 5232 - 5999 640 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 7 4 Op 2 . - CDS 6005 - 7372 1415 ## COG0477 Permeases of the major facilitator superfamily - Prom 7406 - 7465 6.5 + Prom 7344 - 7403 8.4 8 5 Tu 1 . + CDS 7448 - 8074 271 ## PROTEIN SUPPORTED gi|162456259|ref|YP_001618626.1| putative ribosomal protein + Term 8223 - 8260 -1.0 9 6 Op 1 2/0.000 - CDS 8083 - 9078 1315 ## COG3034 Uncharacterized protein conserved in bacteria 10 6 Op 2 3/0.000 - CDS 9093 - 9977 785 ## COG1159 GTPase 11 6 Op 3 24/0.000 - CDS 9986 - 11326 1074 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 12 6 Op 4 3/0.000 - CDS 11341 - 11877 708 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 13 6 Op 5 . - CDS 11877 - 12323 732 ## PROTEIN SUPPORTED gi|239524491|gb|EEQ64357.1| 50S ribosomal protein L9 - Prom 12395 - 12454 14.4 + Prom 12408 - 12467 8.7 14 7 Op 1 . + CDS 12520 - 13665 654 ## COG0477 Permeases of the major facilitator superfamily 15 7 Op 2 . + CDS 13669 - 15811 1839 ## COG0699 Predicted GTPases (dynamin-related) Predicted protein(s) >gi|197282966|gb|ABQU01000084.1| GENE 1 42 - 332 493 96 aa, chain - ## HITS:1 COG:HP0835 KEGG:ns NR:ns ## COG: HP0835 COG0776 # Protein_GI_number: 15645454 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Helicobacter pylori 26695 # 1 95 1 94 94 83 66.0 1e-16 MNKSEFVDLVKQVGEYETKKEAEKAISAFVAAIEKALSKKDGSVELVGFGKFETVLQKGK EGTVPGTNKKYKTKDKFVPKFKAGKGLKDAVAAAKK >gi|197282966|gb|ABQU01000084.1| GENE 2 647 - 1645 1090 332 aa, chain + ## HITS:1 COG:HP1346 KEGG:ns NR:ns ## COG: HP1346 COG0057 # Protein_GI_number: 15645959 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Helicobacter pylori 26695 # 1 330 1 330 330 368 54.0 1e-102 MSIKVAINGTGRIGLCVCKILGERDDLELVAINTTMPIDTLIHLLKYDSIHKKSEITKIS ENQIRIGKQQNIQIISTRNIQEINFGNYGAEIVIECTGAFNDIHKASAHLYGGIKRVVIS APATDTPTFVYGVNHLTYNGESIISNASCTTNALAPLTKVLHENFKILSGLMTTIHSYTN DQNLLDSKHKDLRRARAAALNMIPTSTGAAKAIGLVMPELKGKLNGFAVRVPTPDVSLVD LTCVVEKDVTKELINETFKKASEESMKNLIFIDEEKLVSSDFIGSSYSSIFIPDCTNVVN NNQVKIVAWYDNEWGYSTRLVDMTAFVGRSLI >gi|197282966|gb|ABQU01000084.1| GENE 3 1642 - 2910 752 422 aa, chain + ## HITS:1 COG:Cj1535c KEGG:ns NR:ns ## COG: Cj1535c COG0166 # Protein_GI_number: 15792843 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Campylobacter jejuni # 15 416 3 401 406 295 45.0 2e-79 MIHLSNTYEKFIPKDSHLFSKENIESCFQKILTEKANGTSGYYNLPYEDNRAIFDYIHTN QAFLQSIKTLVIVGIGGSSLGTKAIDALLSHQNNRKNIKIRFLEHTDPIMIHKDLQRVKC EESLFIVISKSGLTIETTSLFKYVLQRFCLLETKNKKRLITITDEDSPLFQWSKTENIQS FTIKPNIGGRFSVLSAVGLLPLAILGYDICNILKGAQNIATQFFIEKKSEILKKAIFLAK NETSYPINVLFSYSSVFRHFNSWYVQLWGESLGKLDHQQNKRGLTPIALIGSIDQHSFLQ LIMQGPQNKSVTFLSVEKLSQKSLYIPNISLKGLEATDFVNNTSFNNLLKLQCVATKESI IAQNVPVDSLVLASLCEESVGELIFYYELLTSCVGVLLQIDTYNQPGVEFGKKILREKFT HI >gi|197282966|gb|ABQU01000084.1| GENE 4 2992 - 4011 1114 339 aa, chain + ## HITS:1 COG:MA3607 KEGG:ns NR:ns ## COG: MA3607 COG0280 # Protein_GI_number: 20092407 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Methanosarcina acetivorans str.C2A # 1 335 2 333 333 334 53.0 1e-91 MSLIENIKEKAKSFLQTIVLPETNDMQTLEAAHTILKEGIANLILIGDELSIQKQAKKAN LDLQKATFINPASCDELEDYVELFVKLRAHKGLSEKSARTLLLENPLYFGVALVKSKKAD GMVAGAINSTADVLRSSLQILGTKQDSKLVSAFFLMVVPNCEYGENGTFIFADSGLVQNP NAQELASIAIDSAKSFQTLVGKEPIVAMLSHSTKGSAKHPDVDKVIEATKIAQSLAPQIA IDGEFQLDAAIVPSVGKSKAPDSKIAGYANVLVFPDLDSGNIGYKLTQRLAKAEAYGPIT QGIAAPINDLSRGCSSEDIVGVVAITALQAQQQKETKGA >gi|197282966|gb|ABQU01000084.1| GENE 5 4012 - 5223 1287 403 aa, chain + ## HITS:1 COG:TM0274 KEGG:ns NR:ns ## COG: TM0274 COG0282 # Protein_GI_number: 15643044 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Thermotoga maritima # 1 399 1 400 403 481 60.0 1e-136 MDILVINCGSSSLKYQLINTDTEEVLASGICDRIGIDGGQFSYKPKDGEKSTQNIEIKDH EVAIKLVLGALTNPFNGAVKSLETIKAIGHRIVHGGEHFTHSAIITEEVIYNIEECADLA PLHNPAHLLGIRACQHLMPNTPMVAVFDTAFHQTMPPKAFIYGLPYEYYTKYKIRRYGFH GTSHSYVSKRTAEFLGIPLENSKIITCHLGNGSSICAVENGKSIDTSMGLTPLEGLVMGT RSGDIDPAVIDYIAQKENLSTKEIMNILNKKSGVLGISGLSSDFRDLLAADEKGDLKARF AREVFAYRVAKYIGSYTAALTGVDAISFCAGVGENAKFIRGKIVSHLQFLGITLDEKANL ETIGREGIISTSDSKVKVCVIPTNEELMIARDTKALVSKAYNL >gi|197282966|gb|ABQU01000084.1| GENE 6 5232 - 5999 640 255 aa, chain - ## HITS:1 COG:HP1182 KEGG:ns NR:ns ## COG: HP1182 COG0037 # Protein_GI_number: 15645796 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Helicobacter pylori 26695 # 6 254 4 252 253 315 60.0 7e-86 MEEKIEISKKILRITGSTNAEFGLIKEGDKILLGLSGGKDSILLATLLARLKKYAPFDFE FKALTVDYGRGGEYEYIFEYCEKLGIPYELYRTDIYKILEENRREGTVYCSFCSRMRRGA LYSKALEGGFNKIALAHHLDDAAESFMMNLTYNGALRSMPPIYKAKNGLYVIRPLIFVRE RQIIDFIAKNNIYIAPDCNCPIMWQSDDKRPFAREKTKQMLKEMEMNNPDFFTSLKVALG NVHLNSLFDKRYLDK >gi|197282966|gb|ABQU01000084.1| GENE 7 6005 - 7372 1415 455 aa, chain - ## HITS:1 COG:HP1181 KEGG:ns NR:ns ## COG: HP1181 COG0477 # Protein_GI_number: 15645795 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Helicobacter pylori 26695 # 7 439 1 434 443 321 44.0 2e-87 MIKKESLIKQTIPLSLILAGRFFGLFVVMPVLSLYALSMEGMSPILVGIAIGGYALTQVL FQIPFGFLSDKFGRKSIIALGLIIFIIGSAVCAMSDDIYMLILGRFLQGAGAIGGVVSAM IADLVKEEKRTKAMALMGATISLSFTTALIVGPILSAYFGVASLFWITCFLGVLSLGILL LFVPEAPKIQYSFISSSDKYSFILKNKNLQIMNLTNFLQKGFMTLAFLIIPIALVKGFEM PKENLYQVYVPASLLGLIAIAPAAIFAEKKGKFKSVLVVGILFFVVAYLLMLSQNLWVFV AGILVFFVGFSVHEPIMQSLASRYCKAHQKGSALGVFTAFGYFGSFVGALVGGHLYEYFG MLSISLFVVVVSFLWILALGFLANPTFQKNLYLPLRENIVNEDLEKLVELRGILEWFINE NERVVVIKYDKHLVLEQEVKEFLKENLADKFEELK >gi|197282966|gb|ABQU01000084.1| GENE 8 7448 - 8074 271 208 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|162456259|ref|YP_001618626.1| putative ribosomal protein [Sorangium cellulosum 'So ce 56'] # 1 203 6 203 207 108 34 2e-23 MRLILATSNQDKIIEIQEIYKPFEQNALEILAWSDLCNPFEIDENGKTFQENALIKSKAV FNTLHAKNLLSQNDIILSDDSGICVDALDGKPGIHSARYSGGDSKANLEKLLCEVAKLPN QTSKAHYCASIGISSFYGDFSTHGFMYGKVIANQRGKNGFGYDPMFIPQGFTQTLAELTK EEKNAISHRYIALNRAKYILRALFKAFK >gi|197282966|gb|ABQU01000084.1| GENE 9 8083 - 9078 1315 331 aa, chain - ## HITS:1 COG:HP0518 KEGG:ns NR:ns ## COG: HP0518 COG3034 # Protein_GI_number: 15645145 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori 26695 # 19 331 23 330 330 326 52.0 4e-89 MKIIWLLLIAIFSYANEYEWIGIYRSGGVQALEQKINEVLQTKNYWQEVLKNQDTRFGYY ENLKYLFVATKDAPTLESPNLKLYALENNQWIEKLNTKSLVGSKGGHKQKEGDLATPIGV YSLQARLSNLDQYYGPLAFSTSYPNLYDKLQKRTGYGIWIHGMPLNGNREELNTRGCIAI ENNLLTSVDRIIDYRNTLLITFADDVEQTKKEDLATILADLFQWKEAWAKNDIKAYLAFY DKDFIRYDGQKFEAFEDTKRRIFQKGEEKEIKFTKINVSPYPNEENKKLFKISYHQDYKA FLKGTLNYYSNGNKELYVELKNGKMQILVEQ >gi|197282966|gb|ABQU01000084.1| GENE 10 9093 - 9977 785 294 aa, chain - ## HITS:1 COG:jhp0466 KEGG:ns NR:ns ## COG: jhp0466 COG1159 # Protein_GI_number: 15611533 # Func_class: R General function prediction only # Function: GTPase # Organism: Helicobacter pylori J99 # 1 293 1 297 301 259 47.0 4e-69 MESKAGFVAVLGRPNAGKSTFLNTLLGERLALISHKANATRKRMNLVVMVEETQIVFVDT PGIHKQEKLLNQYMLKEAMKAMQDCDFLLFLAPASDKIDFYIDFLESAKGKPHFLLLTKI DCVSKEKLFQKIKEYEKFQDSYQALIPISCKDIKSLEYVAKELAKIMPKNPYYYDPEILS PNSTKEIVKEMIRESCFENLSDELPYESDVVINVYKEKATLDYIKASIIVQKESQKAMVI GKEGKTLKRIGKNARERIEQFVRKKVYLEILVKVVSSWSKDKESLKKIGYNFED >gi|197282966|gb|ABQU01000084.1| GENE 11 9986 - 11326 1074 446 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 7 446 8 466 466 418 47 1e-116 MENYIAMTPKEIVAYLDEYIIGQNDAKKIVAIALRNRYRRLQLPKEIQEEVMPKNILMIG STGVGKTEIARRMAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLVIASINLVKEEHRQ KNRAGIEKYVLDKIVEKLIPPLPKGASEQKIEEYENAAEKMRQKVKNGEMDHLKIEIEIP KRTFEIEDGNMPAEFAKVQETIARVFIASPKDNPKKEVTIKEAKEILKVEASEALLDLES IKQEGLKRAENSGIIFIDEIDKVAVSSNSQGRQDPSKEGVQRDLLPIVEGSIVNTKYGSI KTDHILFIAAGAFSLSKPSDLIAELQGRFPLRVELNSLDEEVLYKILTQTKNSILKQYEA LMAVEEVSLKFSDEAIRALAHYSQLANEKTEDIGARRLHTVVEQVIEEISFEAENYKGQE VEITESLVKEKLETLVADSDVARYIL >gi|197282966|gb|ABQU01000084.1| GENE 12 11341 - 11877 708 178 aa, chain - ## HITS:1 COG:HP0515 KEGG:ns NR:ns ## COG: HP0515 COG5405 # Protein_GI_number: 15645142 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Helicobacter pylori 26695 # 1 178 1 180 180 268 78.0 4e-72 MFEATTILAYKTEKGAVIGGDGQVTFGNCVLKGNATKIRTLYHGKILSGFAGSTADAFTL FDMFEGILENKKGDLLKSVMEFSKEWRKDKYLRRLEAMMIVLDKEKIFILSGTGDVVEPE DGKIAAIGSGGNYALSAARALDRFGKGDMEPRDLVLESLKIAGELCIYTNQNIKILEL >gi|197282966|gb|ABQU01000084.1| GENE 13 11877 - 12323 732 148 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239524491|gb|EEQ64357.1| 50S ribosomal protein L9 [Helicobacter pullorum MIT 98-5489] # 1 148 1 148 148 286 100 6e-77 MKVLLLQDVKGLGKKGEICEVKDGYGKNFLIAKKMADFATNEVINRYKAEQKRAAEQAAE NQALMEMAAKKIEAITLKIQQKVGANGSLYGAITKEDIAKELAQKHRLEIDKKTIELKNP IKSTGMYEVEVKLGHGIHAILKIDVEAL >gi|197282966|gb|ABQU01000084.1| GENE 14 12520 - 13665 654 381 aa, chain + ## HITS:1 COG:ZynfM KEGG:ns NR:ns ## COG: ZynfM COG0477 # Protein_GI_number: 15802010 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 EDL933 # 3 370 33 407 417 120 26.0 5e-27 MQQKYNLTTIMFSAIVIISTLYITQPIQPLLINEFQISTTQVTLFTSVILFALAIAPIFY GYLLEKFDTKLILIASLMLLGVFQCLLSFTQQYSTFLILRICEALMIPAALTATMTSLTR IDSKNKYIGLYVASTVFGGVLSRVGGGFLTTLFSWRFTFIALGISTLLIAFLAFKLPHTN TKIQSSKITFAIILDFLKDKRFLLLYSGAFLILFCFQGILNFMPHYITSLNPQITPAQIG FMYFGYIVGIITAILSKKITRFFKGEIKTIALGFFIFGASCWMMLFGDFWQLFFAIFTLC FGMFIINSVLSSFINTISKNKKGITNGLYLAFYYAGGTLGTTLPTYIYHPFGWNTLCLLL GGILFVSALVFYQSQKLFWQG >gi|197282966|gb|ABQU01000084.1| GENE 15 13669 - 15811 1839 714 aa, chain + ## HITS:1 COG:Cj0411_1 KEGG:ns NR:ns ## COG: Cj0411_1 COG0699 # Protein_GI_number: 15791778 # Func_class: R General function prediction only # Function: Predicted GTPases (dynamin-related) # Organism: Campylobacter jejuni # 139 405 121 383 392 171 42.0 7e-42 MEWFKETFKDILPLESFHIADLPKDSCNEILAILLSLTPKTFNLFWQSQTLKNICKEYLY NTTYFKTIQQAQYQILLTLQNQKDSQKLQEILQNLDFMRHHNLLEESRYNNLKSFLTSHF QNHPNHQTTHLEKTPQLPKNLLENFFDESLKILTKELNSLSSIAPKNIFENLQNLITKAQ SQHFSIGITGVLSSGKSTLLNALLGQEILGSSTIPETASLTILKYSPKSYAKIIFWNQEQ WQELKSTLDSKLLENLLENQEFSDFLKNYIQKSEQSLEIPLQDLPKFTSANHPSKLCNLV QKTILFTPLNFLKNKVEIVDTPGLDDPIIQREEITKNYLTKCDLLIHAMNASQSATQIDL EFLLETLQTSNISRLLIILTHADLLTQEELHQALNYTKESIQAKFQQNLPPSQAKLFLER LDFIHIASYPALLCQNNPKQAKELGYTLESSNFNTFLEYLQKTLLGNNSTKAKDIIYLTA QGFHKNIEILKEYLDLELKLLFSTQEEIAMLIQKNKQEINEANKEFETLKFNLQNTQTHF QEYLKSTKNTLTQKLNEAQNILIQRIFEDILYDYQKHSSPSKERIERILTQGLEDFLIDI LRTYRQNLTQKISQLQNTLLPTLKTPQMQLHKSTITKTKIQILNHLNSLSLHSYKNQENK LKEDLQQAFQNGFANFENTIYHQSQEIASAFLNDLKTNFEEIMQQSSQNLETKK Prediction of potential genes in microbial genomes Time: Tue May 24 02:57:55 2011 Seq name: gi|197282965|gb|ABQU01000085.1| Helicobacter pullorum MIT 98-5489 cont2.85, whole genome shotgun sequence Length of sequence - 24007 bp Number of predicted genes - 23, with homology - 22 Number of transcription units - 6, operones - 3 average op.length - 6.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 148 122 ## 2 1 Op 2 1/0.000 + CDS 141 - 2162 1234 ## COG0699 Predicted GTPases (dynamin-related) 3 1 Op 3 . + CDS 2232 - 3047 581 ## COG2214 DnaJ-class molecular chaperone 4 1 Op 4 . + CDS 3050 - 3766 766 ## WS1624 hypothetical protein 5 1 Op 5 17/0.000 + CDS 3770 - 4624 676 ## COG0061 Predicted sugar kinase 6 1 Op 6 2/0.000 + CDS 4624 - 6177 1351 ## COG0497 ATPase involved in DNA repair 7 1 Op 7 . + CDS 6174 - 7490 980 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP 8 1 Op 8 . + CDS 7500 - 7820 508 ## WS1620 hypothetical protein 9 2 Tu 1 . + CDS 7894 - 8520 424 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent + Term 8526 - 8554 -1.0 + Prom 8534 - 8593 7.3 10 3 Tu 1 . + CDS 8759 - 11419 1897 ## COG0474 Cation transport ATPase - Term 11494 - 11539 1.1 11 4 Op 1 . - CDS 11540 - 12235 526 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases 12 4 Op 2 . - CDS 12236 - 13819 2019 ## COG0306 Phosphate/sulphate permeases - Prom 13847 - 13906 6.1 + Prom 13806 - 13865 5.0 13 5 Op 1 . + CDS 13965 - 14699 856 ## COG2063 Flagellar basal body L-ring protein 14 5 Op 2 . + CDS 14757 - 16217 1409 ## COG0498 Threonine synthase 15 5 Op 3 3/0.000 + CDS 16228 - 17112 833 ## COG0752 Glycyl-tRNA synthetase, alpha subunit 16 5 Op 4 7/0.000 + CDS 17093 - 17836 468 ## COG0327 Uncharacterized conserved protein 17 5 Op 5 3/0.000 + CDS 17862 - 18575 949 ## COG1579 Zn-ribbon protein, possibly nucleic acid-binding 18 5 Op 6 3/0.000 + CDS 18582 - 19808 642 ## COG1519 3-deoxy-D-manno-octulosonic-acid transferase 19 5 Op 7 . + CDS 19805 - 20578 165 ## PROTEIN SUPPORTED gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family 20 5 Op 8 1/0.000 + CDS 20647 - 21564 1125 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 21 5 Op 9 . + CDS 21574 - 22659 1185 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs 22 5 Op 10 . + CDS 22659 - 23354 858 ## COG0139 Phosphoribosyl-AMP cyclohydrolase + Prom 23361 - 23420 3.3 23 6 Tu 1 . + CDS 23516 - 23902 358 ## gi|242309091|ref|ZP_04808246.1| predicted protein Predicted protein(s) >gi|197282965|gb|ABQU01000085.1| GENE 1 2 - 148 122 48 aa, chain + ## HITS:0 COG:no KEGG:no NR:no ILQKSLDKSNSTQKQQKESQIMHSISSLKEIQILLQELQEYATRNNNA >gi|197282965|gb|ABQU01000085.1| GENE 2 141 - 2162 1234 673 aa, chain + ## HITS:1 COG:Cj0412_1 KEGG:ns NR:ns ## COG: Cj0412_1 COG0699 # Protein_GI_number: 15791779 # Func_class: R General function prediction only # Function: Predicted GTPases (dynamin-related) # Organism: Campylobacter jejuni # 45 187 46 196 196 124 48.0 6e-28 MLKQYLQECLEILDKNSQKTELQKFIIDCQNNLNPNDYSQDFFESLQNKTKEPMQIAIIG QFSSGKSTFLNALLGQDILPTGITPITSKVCKICYGEDFILEVLYKDGNKVLQNIHFLKQ LTRQNSKNIDSLCLYAPILMLKEINFLDTPGFNSQNHDDTKTTLDILKNVDGIIWLTLID NAGKNSEKKLLQDFIKHYSQKTLCILNQKDRLKNEEEIQTSLQYANESFKEIFSQIIPIS AKMALQAQLNTPQKMIETLFSNFSFEIQNFIHQTSTTKTNENSFLQTLESSYQSFKNTLN TQLNNSQNSYYNDLIQKSGMPLIFDFLNHSIKPKAKLSKEYSALKKLKEMHILLHYQYHK IYQCYTQLIQIFKNHLTDITLQHHKYQENEQKKFNELYTNLDLLLDSLAQFIFNSLEQTP TNFPKQQKRLFIPKTTTHTKNITTLPLEKIKISLQNPDSPIIKDFKSLSAQIKNFCNLFA NTMEEFSTLLHLQIKQWQNTQIEKQEFYKYAPNNQSLKELQNFSQQYYENLFVDFSTNNQ KIISNLQSELIFLSNFIVFYYDNAIESTLNKIDLKIKNSLAKHRENPDFPIFIPSLENIR DSLNETFCFEHFQTKLFGPMNLLKKSYSQFLTQLEKTTQAKISLINSKIATLKIEIDKIT KNLHNIKQFKKWN >gi|197282965|gb|ABQU01000085.1| GENE 3 2232 - 3047 581 271 aa, chain + ## HITS:1 COG:HP1336 KEGG:ns NR:ns ## COG: HP1336 COG2214 # Protein_GI_number: 15645949 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone # Organism: Helicobacter pylori 26695 # 2 264 3 252 253 155 37.0 8e-38 MKVELLEPYIQISIEKESRFLKRAVDFAYKHFSKAYRLSSSVLILDDGERYKKDYFLNWA YHVAMQEENKKHSPNFQTIIDSSHLPIRIKMVENKAVLEHIIVSLQILHTSSLNTQVCLR LNRPNRLAKRYLQSLFQNFLISYTKQEIFLDSSSPYFWEKLVSMLSQKIIYNIVLDFDYE TFKTNNTFECFGEYTTKEERLLKKSYKILGCNDDDDFENVKNRYIELAKIYHPDNVYGQD QKIIEGYAEKFRIIKEAYENIKSNFKCYIRS >gi|197282965|gb|ABQU01000085.1| GENE 4 3050 - 3766 766 238 aa, chain + ## HITS:1 COG:no KEGG:WS1624 NR:ns ## KEGG: WS1624 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 83 238 70 221 221 169 55.0 9e-41 MEENNKNTQSPEEPIIQLNFDEETKKSHFWLFLSILITLIIVIFGIGYYFLNHKNSQSAI QSLQNTLGITQETTSTEYAKEEEIRRLQEALMQKEKELLNLAQSVEGLNISVQEIQQTNT TNLRYTIKPKKQIIAECFSMQIGKWDIPQGCLLSLATKIGNELEKDKKVVAFEIQGIVDN NPYKGLSPELKQEGLASFRAWSAIREINKKIPNTTAFEGPSLQLKDKRGYRIKAYFVE >gi|197282965|gb|ABQU01000085.1| GENE 5 3770 - 4624 676 284 aa, chain + ## HITS:1 COG:Cj0641 KEGG:ns NR:ns ## COG: Cj0641 COG0061 # Protein_GI_number: 15792001 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Campylobacter jejuni # 4 282 8 286 286 215 39.0 7e-56 MKNQTINILGVILRPSTPALKEYFLDFQSLAHSLGFEVILDSISAGMINMNGLNFEELCK QCDALVSIGGDGTLISTARRSFSHQKPILGINMGHLGFLTDLQKDEVSSFLPNLKNGDYN ITNHMMLEGKIDNQTSFFALNDIILTRPHNTSMIHLRAYIDENYFNSYYGDGLIIATPTG STAYNISAGGAVVYPFSHNLLLTPICAHSLTQRPLILPSTFTIKVELGEQGLCNIIIDGQ ENKTLKFKQQISIVAQKNGAKLIHNPHWDYFKILKQKFHWGDYE >gi|197282965|gb|ABQU01000085.1| GENE 6 4624 - 6177 1351 517 aa, chain + ## HITS:1 COG:Cj0642 KEGG:ns NR:ns ## COG: Cj0642 COG0497 # Protein_GI_number: 15792002 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Campylobacter jejuni # 5 515 1 507 507 246 38.0 5e-65 MQKILLQKVVIKNSPAFKEASFEPTPNFNVFSGASGAGKSVLMESILALFGLKESNAEIL EATLELYGIPEELKGLIDEGEVTLTLTKKDKIRYFLNAQNIPKKKITEIFAPFLKYLGTK TYASFKEENLFFALDNFCIVQNSQHQNLLTSYQKAFNTYQNAKSNLNKLQEESLKVNELK EFLQFEIQKLETLNPKKGEYEELLALKKEISKKEKISQSLQEVQEILNHSHKISNFLNLI NYENDSILNAFSELESLCQQESERLNEIDNLNPEEILNRIEALSSLKHRYGGIDEAIEAL KNKKEELQKYENLETFLKEAKNAFNQSQNSLQQTAKALLDSRNSHLQAFQQSLNATLKKL KMPPATITLQELPLDSYNILGNANFIITLNTELKNLSAGEFNRFLLALLLTQSTQEKNQA IIILDEIDANLSGEESQGVAEILNQLSTNYQIFAISHQPHMPSLSSSHFLVQKHLEGSQI IPLDKNGRIQEIARMISGNKITKEALDFAAKCIENLQ >gi|197282965|gb|ABQU01000085.1| GENE 7 6174 - 7490 980 438 aa, chain + ## HITS:1 COG:Cj1349c KEGG:ns NR:ns ## COG: Cj1349c COG1293 # Protein_GI_number: 15792672 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Campylobacter jejuni # 1 438 1 435 435 194 34.0 2e-49 MNLSTLKQFSTFLNATPKKLRSIKRIGDNLFRLDINAEIFYFDLTKSKSTIYITDELLIS PKIYNAPFDKSLQKLCYNAQIKDSKIDGDNRILQLFLETQNSYKTNQVILQAEFTGCYTN LILLTTNFIVLDALRHITQEQSFREVKIGKPLLPLPQPTKKPLLKEQGDLFEILKTNFLE LKTKTLQQKIIKSSTQINHKIKQLQHFLESLEDKKVLETNAKQESLFGKLILQNLYLHPN FKGKEITLENTTITLPSKATSLSHAAQIFFENSKKLSKKAQNIHLQEENLQERIAFYTSL LKMVQNVTNLNDLQILDSHSQKENKNKTSKSFENFFIEGFKVSIGKNQRENIALLKEAKA DDIWMHIRNIPSSHLIIHCGKNKIPEIILQKAAKILVGFLKSFNGNYEVDYTKRKFVKIT QGANVTYAKEQTLQIAKN >gi|197282965|gb|ABQU01000085.1| GENE 8 7500 - 7820 508 106 aa, chain + ## HITS:1 COG:no KEGG:WS1620 NR:ns ## KEGG: WS1620 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 65 1 65 103 62 70.0 5e-09 MAVSPISNVNYINQNSQVSSVQQANAQVKLDFQTMVNLQEMQDRQEEIQEVRPTEETLKT DEDKEGNGKRDQEGNQNQNQKKSQKDSQDEIQLGEDGTIQHLNISV >gi|197282965|gb|ABQU01000085.1| GENE 9 7894 - 8520 424 208 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 4 192 5 201 201 167 43 5e-41 MFKLRELPFNEIQDFISKETCEFHYGKHHQTYVNNLNNLIKGTEFENSSLFEIVTKSQGG IFNNAAQVYNHDFYWDCIAPKETPLSAELQEAINDSFGSFEKFKESYLQAATTLFGSGWC WVVYNPNSKKLEITQTSNAQTPITQGLIPVLVVDVWEHAYYVDYRNARPSYLEKFFNHIH WDFVSKSLEWAKKEGLNSVNFYMNSLHS >gi|197282965|gb|ABQU01000085.1| GENE 10 8759 - 11419 1897 886 aa, chain + ## HITS:1 COG:MA4082 KEGG:ns NR:ns ## COG: MA4082 COG0474 # Protein_GI_number: 20092875 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Methanosarcina acetivorans str.C2A # 1 881 1 903 909 493 33.0 1e-138 MFHNTPLEELISKYHSNQELGLTSQQVLENQANFGANVFEKSPPPPFLKQLIEALKEPMV LLLIFAAFLALGINTYEYLYHQKANFLECAGIFIAIFLSVAITLIMENRSQKAFEALNAI TQDNKIKVLRNGEIQLITQENIVAGDIVFLETGNKIPCDCRILNSQSLMCNESSLTGESM PNTKSAILSHQDSSNTYENMLYSGCFITQGNAKALCVATGNNTEFGKIAKALDSSIKTTT PLQEKLQKLSSKITIFGASAAFLAFIIQVCFFIFRDNAGFENIAQAFISSIVLIVASVPE GLPTIVAISLALNIIKMSKQNALVKKLIACETIGCVNIICSDKTGTLTQNQMSVEYSFIQ DRIIEVKESYTALQSSPIKDSSFFLLHNAALNSTADITKKDNSYNFIGNPTECALLVWGD KIGFDYHKIRKNFQILHSFPFSSQTKNMTSIAQIQDKMICFSKGSPEKILDICSMMPCQD VQKIHKQILYYQSLAYRVIAFAHKELPSNTNLQDRDFLESQMVFDGFVAIADPLREEVYE AIQDCKNAGINIKILTGDNLTTAKAIGNQLHLLDDHSIILEASQLENLSQQELLKILPKV KIIARSTPHTKMQIVNALKSQGNVVALTGDGINDAPALKNADVGIAMGISGTEVSKEASD IVLLNDSFATIVKAIEWGRGIYQNFQRFIQFQLTVNLSSVIIVLSAVIMGFTAPFSALQL LWVNLIMDGPPALTLGLEPISKNLLKQKPIQRNANIITKNMLSLIIINGIFIAFMCLLQY FTNFLGAKEEEKTSVLFTLFVVFQLFNAFNARELNNQSIFKNFASNHLMLGVFIITFALQ VLIVEFGGEAFQTTPLSLEMWGKILFVGFSVIIIGELMRFILNKIK >gi|197282965|gb|ABQU01000085.1| GENE 11 11540 - 12235 526 231 aa, chain - ## HITS:1 COG:alr4370 KEGG:ns NR:ns ## COG: alr4370 COG0639 # Protein_GI_number: 17231862 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Nostoc sp. PCC 7120 # 9 224 10 217 251 101 31.0 1e-21 MDYSKPLYIIGDVHGCLDTLCALIEKLPQKWDSQIIFTGDLIDRGSKSCEVVDLVKDHNY ACVLGNHEELMLEYYHAIPPRGYNKVWINNGGYEAMESYQKNGGFEKIHEHLEWFLGLPR FLEIPIYDEKGQRLFVTHGFGLPYYKEKEKKAEMITWSRLKSHNWEKETKKKYGVFNVFG HDVRLVPMIMDNFAAIDTGCVYINDDSKSAVLTALEWPSKRIYQQSYCESE >gi|197282965|gb|ABQU01000085.1| GENE 12 12236 - 13819 2019 527 aa, chain - ## HITS:1 COG:HP1491 KEGG:ns NR:ns ## COG: HP1491 COG0306 # Protein_GI_number: 15646100 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Helicobacter pylori 26695 # 1 525 1 529 533 460 54.0 1e-129 MNIKDFLRYENALRLNYGDVQKVGVITLFVLLIIAMVVWNNDGIENSLLLGFAAIVGGYM ALNIGANDVANNVGPAVGSKALSMFGAISIAAVCEISGALIAGGEVVDTVRSGIISMEAI GDSKAFITLMLAALLSGAIWLHFATAIGAPVSTTHAIVGGILGAGIAAGGFGVANWRELG NIAMSWVISPLAGGVIAALLLYFIKNAITYKQNKKQAARRVVPYLIAFMTWAFSLYLINK GLKKIIVLDNMIVFGISLVIAVVVFLAVKPIIAEALENMENKKEEINKLFTIPLIFSAAL LSFAHGANDVANAIGPLAAIYDALKSGFSGGAEAAVPFWIMLLGGLGISIGLALFGPKLI KTVGSEITELDQIRAFCIAMSAALTVLVASELGMPVSSTHIAVGAVFGVGFLREYLKKRY KEMELKILETHKDRDSEQIKKFLEYFRKASIKKKAAILKSIDRKKTKKQEGIPELKKKGQ KQLKKVYQEELVKRSAINKIVAAWLITVPFSAALGALSFFILKWLGI >gi|197282965|gb|ABQU01000085.1| GENE 13 13965 - 14699 856 244 aa, chain + ## HITS:1 COG:Cj0687c KEGG:ns NR:ns ## COG: Cj0687c COG2063 # Protein_GI_number: 15792036 # Func_class: N Cell motility # Function: Flagellar basal body L-ring protein # Organism: Campylobacter jejuni # 21 244 11 232 232 239 56.0 2e-63 MKKLRVFAKIAILGSFMSGGFLFNGCANTDPQISFKPPAYVEELPPKEEEDNFGNPGSIF GRGDNLLFSDRRAMQLNDLVTVIINQTAQASSSANKNLNENSSGTLGGPSLTYAGSSSSI NSIVNGINNATGFGINLGNNTSTYAGTGTQNRQETFTTTIAARIIKVLQNGNYFIEGSRE VLINGEKQIIHLSGVVRPTDIARNNTIESQYIADAKIMYDTQGELKKNTEKGWGTKLIES IWPF >gi|197282965|gb|ABQU01000085.1| GENE 14 14757 - 16217 1409 486 aa, chain + ## HITS:1 COG:Cj0812 KEGG:ns NR:ns ## COG: Cj0812 COG0498 # Protein_GI_number: 15792150 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Campylobacter jejuni # 19 486 15 468 470 436 51.0 1e-122 MQKQYFIGTRGGDSASIVFKDAVLNPNAAYGGLYTLENIPHFSKEQIESLSHFDYATLTK TIFDALGLGIEESTLQKALNLYQDFDDSTTPAPLVKINQNLFLQKLYCGPTRAFKDMALQ PFGVIFSKFVEDSSKEYLILTATSGDTGPATLQSFANKPNIKVVCIYPKGGTSDVQRLQM TTLNAKNLKVIGINGDFDDAQSLLKQLLKDKTFSQKLQEKNISLSAANSVNFGRIAFQII YHIYSSLQIYQTTKEPINIIVPSGNFGNALGAFYAKLMGFPIQKIWIASNQNNILTEFIQ TGIYDISQKRLQKTYSPAMDILKSSNVERVLFALFGSNRTKELMESLEKDKKYSLTQMEL QKIQEYFNATFCDDSYCLETINQNALNGLIIDPHTACGFKAYEEIQKETPNTPCVLCSTA EWTKFAPTLAKALKLGNLSDEQALQTLAKNFSLKIPEQILNLFTQKEIHTQTMDKDKIYQ AILEWL >gi|197282965|gb|ABQU01000085.1| GENE 15 16228 - 17112 833 294 aa, chain + ## HITS:1 COG:jhp0894 KEGG:ns NR:ns ## COG: jhp0894 COG0752 # Protein_GI_number: 15611961 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Helicobacter pylori J99 # 1 293 1 297 298 460 74.0 1e-129 MLYFSELLLKLQQFWKEQGCLIIQPYDIPAGAGTFHPATLLRSLDSKPWSVAYVAPSRRP TDGRYGENPNRLGSYYQFQVLIKPNPNNIQELYLKSLEFLGLDLKNHDVRFIEDNWESPT LGAWGLGWEVWLDGMEVTQFTYFQQVGGIPCDPVAVEITYGTERLAMYLQGVENVFDIAW NENYTYADVHLEGEYEFSKYHFEIADTKMLFDFFTKMQEEGYRALEAGLPLPAYDCAMLS SHLFNILDARKAISATERQNYILKIRELSKACATLYKEQESTRIQRLENVKSKK >gi|197282965|gb|ABQU01000085.1| GENE 16 17093 - 17836 468 247 aa, chain + ## HITS:1 COG:Cj0705 KEGG:ns NR:ns ## COG: Cj0705 COG0327 # Protein_GI_number: 15792054 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Campylobacter jejuni # 8 246 3 240 241 224 46.0 1e-58 MSNPKNNIAEILEKLDTLSPFALQESWDNSGLILGSKSRNFQKIYLALEVTQSILEQMEE NSLLITHHPLIFSPLKALIDETYPTTLLNLAICKNIQLIAMHTNFDKTHFGKYLVEKILG IKTYIQEDFAIKFQWDSDFASLCELIKTKMNLQNLKITHSPNPKCKNIALITGSGGDFIR TLQGIDCLITGDIKYHQAMESLQKNIHLIDCGHYELERYFGEILSPLLTNLGYKAIILDS QNPFCFV >gi|197282965|gb|ABQU01000085.1| GENE 17 17862 - 18575 949 237 aa, chain + ## HITS:1 COG:Cj0706 KEGG:ns NR:ns ## COG: Cj0706 COG1579 # Protein_GI_number: 15792055 # Func_class: R General function prediction only # Function: Zn-ribbon protein, possibly nucleic acid-binding # Organism: Campylobacter jejuni # 1 235 1 235 238 159 44.0 4e-39 MNKHLTQLIEIANLDKEIDSFEPRIKEANKELDAILSQEKTLQSEVEEIKGVAKDISLSI QKNENHLEDLSLKLEEIAKKTKLIKTEKESKALSLEEELAKEQITFANEEIARLNTLLEA KNANIKELEDKINSLKESQKEISQETEIEVQKIKKEQQEIFTKKESLVAKMDQKIISFYE KIRKWAKNTSVVPVTRQACGGCFIRINDKIYSDVIRSDDIITCPHCGRILYNQEENA >gi|197282965|gb|ABQU01000085.1| GENE 18 18582 - 19808 642 408 aa, chain + ## HITS:1 COG:jhp0891 KEGG:ns NR:ns ## COG: jhp0891 COG1519 # Protein_GI_number: 15611958 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 3-deoxy-D-manno-octulosonic-acid transferase # Organism: Helicobacter pylori J99 # 4 401 2 378 393 270 43.0 3e-72 MTFFISFYYLLICIAHLCAMPFLLALSFKQKYKTSIKKRFFFPTFFQESAALYWFHACSY GEIKSLQNILLSLQEQLTNDEKILITTTTQTGYNLAKTSFPNAIICFLPFESFIPFWIKS LKLKNFTLTEAELWLMPLVCAKKKGATTLLINARISSNSYPKYLKFAFFYKRLFSFIDKI FCQRKIDKKHLKTLGAKNIKVFGNLKLNEIPQITKHYQKPNQELWLVASTHQKNSQYEEI LILEQILKILPKDLSKSPRILFAPRHPERFHSIAILLNQTLKAHKLPPLAIASKSSIQET INAPFGLIDTLGELNNLYSISSLVILGGSFLPNIGGHNPIEPAFFGVKLISGPYIFNQKS LFMALQNYTISDLKNLAEILAKSDLLEPTKITKKLDISKIINTIKGTK >gi|197282965|gb|ABQU01000085.1| GENE 19 19805 - 20578 165 257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family [Lactobacillus jensenii 269-3] # 72 254 82 271 287 68 27 5e-11 MKTKPQNPSNKIPPNAQKAYKLLALQENISNNEAKSLIDRGLVSIQGKKLKIARALLSPH TKFNIQKIPEIKILFQDDNILALSKPAFLTSEEIAKLYPNWALLHRLDKETSGILLLIKE NSPFHLKAKEAFKKEQVFKQYIAIVEGIIEEEQEITAPLIIQKGNFAKVLVSKKEGIRAY TKITPIEIIGKKTKLEIIIKTGKTHQIRAHLAHIKHPIIGDTFYGGKPANRILLHAQKIS LLGYEFQDSPPKDFIFQ >gi|197282965|gb|ABQU01000085.1| GENE 20 20647 - 21564 1125 305 aa, chain + ## HITS:1 COG:Cj0269c KEGG:ns NR:ns ## COG: Cj0269c COG0115 # Protein_GI_number: 15791640 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Campylobacter jejuni # 1 304 1 304 304 466 72.0 1e-131 MNEAKSIWMDGKLVPWHEANVHILTHTLHYGNGVFEGTRAYKTDKGMAIFRLKEHTKRLL NSAKIVAIECPFSQEELEKAQIEVIKDNNFSSNAYLRPLIYLGYGAMGVYHKNSPVKVAI AAWEWGAYLGDEGLEKGIRVKTSSFVRNSTKSLFGKAKAAANYLNSQMAKYEAIECGYEE ALLLDDCGMVAEGSGECFFIVRNGKLITPPNDSSLESITQDSVITLANDLGIEVIRRNIT RDEVYIADEAFFTGTAAEITPIYDLDARIIGNGKRGELTHKLQNAFFDIVYGRNPKYSHW LTYIQ >gi|197282965|gb|ABQU01000085.1| GENE 21 21574 - 22659 1185 361 aa, chain + ## HITS:1 COG:jhp0233 KEGG:ns NR:ns ## COG: jhp0233 COG0330 # Protein_GI_number: 15611303 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Helicobacter pylori J99 # 1 361 1 359 362 337 52.0 1e-92 MPIDLNEHLRQKNKNYKPQNENNNDGGGNNGNNRNKGFQNYPKMPSLNMPSGKKMAAIYI LIILIALLFLLKPFTIINSGEVGVKITTGEFDPTPLQPGIHFFIPGIQKIIPVNTKVRIA EFTSADNQNYRNRDEGSIRDKAISVLDSRGLSVSVELAVQYRLDPLGVPQTIATWGQNWE ERIIIPVIREIVRNVVGSFPAEELPTKRNEIATLIDQRFRENINSLENRPVQLESIQLTE IVLPIAIKEQIERVQVARQEAERARYEVERAKQEAEKQAALAKGTADATIIQADAQAKAN RIISQSLSSHLLQLRQIEVQGKFNEALRNNKDAKIFLTPGGSTPNIWLDSKDLQRSTSAS N >gi|197282965|gb|ABQU01000085.1| GENE 22 22659 - 23354 858 231 aa, chain + ## HITS:1 COG:AF1950 KEGG:ns NR:ns ## COG: AF1950 COG0139 # Protein_GI_number: 11499532 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosyl-AMP cyclohydrolase # Organism: Archaeoglobus fulgidus # 13 112 7 106 108 127 55.0 1e-29 MQILEQIAWDKLQNGLIPAIAQDYQTNEVLMLAFMDKEALKVSLQTGYAHYFSRTKNRLW KKGEQSGHTQEIIEFLLDCDKDTLLLKVKQKGVACHTGNQTCFFNKLTKDSIDTDSSNTL DTSAIYGVVDTLYHTLLERKNANPDTSYTASLYHKGENTIAKKIVEEAAELGFAIKDKNP KEIIYEAADLLYHSLVGLAFSNINPDLVKQEIARRFGLSGIDEKNSRKKAK >gi|197282965|gb|ABQU01000085.1| GENE 23 23516 - 23902 358 128 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242309091|ref|ZP_04808246.1| ## NR: gi|242309091|ref|ZP_04808246.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 128 55 182 182 228 100.0 7e-59 MLFISGAFFVASPFIYQYIMESHLKKIELTLSNNDKLQYDDTYYIKGTIKNIGYFDLKGC IISTNFIPQNTDKFKLIKYKIKPIFTHRETYKQPLKKQETLDFEILFQAPSAINTDIKYI LETKGSCY Prediction of potential genes in microbial genomes Time: Tue May 24 02:58:17 2011 Seq name: gi|197282964|gb|ABQU01000086.1| Helicobacter pullorum MIT 98-5489 cont2.86, whole genome shotgun sequence Length of sequence - 15028 bp Number of predicted genes - 16, with homology - 15 Number of transcription units - 8, operones - 5 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 166 214 ## Suden_0742 tryptophan synthase subunit beta (EC:4.2.1.20) - Prom 192 - 251 7.3 2 1 Op 2 . - CDS 265 - 1686 1095 ## Cla_0642 conserved hypothetical protein, putative glycosyltransferase - Prom 1916 - 1975 7.5 + Prom 1862 - 1921 8.2 3 2 Op 1 . + CDS 1944 - 2936 820 ## PROTEIN SUPPORTED gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase 4 2 Op 2 . + CDS 2995 - 3711 613 ## WS2167 hypothetical protein 5 2 Op 3 . + CDS 3714 - 4502 552 ## COG0169 Shikimate 5-dehydrogenase 6 2 Op 4 . + CDS 4541 - 5089 414 ## PROTEIN SUPPORTED gi|229532345|ref|ZP_04421727.1| SSU ribosomal protein S30P; sigma 54 modulation protein 7 2 Op 5 . + CDS 5025 - 6287 692 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase - Term 6246 - 6282 -0.9 8 3 Op 1 24/0.000 - CDS 6294 - 7571 999 ## COG0004 Ammonia permease 9 3 Op 2 . - CDS 7596 - 7943 511 ## COG0347 Nitrogen regulatory protein PII - Prom 8030 - 8089 10.7 + Prom 7980 - 8039 14.8 10 4 Op 1 . + CDS 8091 - 9098 905 ## COG2603 Predicted ATPase 11 4 Op 2 . + CDS 9102 - 10196 1380 ## COG1186 Protein chain release factor B + Term 10205 - 10246 1.3 - Term 9957 - 9988 -1.0 12 5 Tu 1 . - CDS 10220 - 10714 677 ## COG0716 Flavodoxins - Prom 10769 - 10828 14.3 + Prom 10731 - 10790 13.2 13 6 Tu 1 . + CDS 10941 - 12665 514 ## PROTEIN SUPPORTED gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 + Term 12694 - 12743 4.4 14 7 Tu 1 . - CDS 12662 - 13435 805 ## COG0730 Predicted permeases - Prom 13462 - 13521 7.9 + Prom 13421 - 13480 8.1 15 8 Op 1 . + CDS 13712 - 14578 863 ## COG0709 Selenophosphate synthase + Prom 14683 - 14742 6.6 16 8 Op 2 . + CDS 14765 - 14881 66 ## Predicted protein(s) >gi|197282964|gb|ABQU01000086.1| GENE 1 1 - 166 214 55 aa, chain - ## HITS:1 COG:no KEGG:Suden_0742 NR:ns ## KEGG: Suden_0742 # Name: not_defined # Def: tryptophan synthase subunit beta (EC:4.2.1.20) # Organism: T.denitrificans_ATCC33889 # Pathway: Glycine, serine and threonine metabolism [PATH:tdn00260]; Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:tdn00400]; Metabolic pathways [PATH:tdn01100]; Biosynthesis of secondary metabolites [PATH:tdn01110] # 1 55 1 55 403 66 50.0 3e-10 MQKPYLKQFPDNNGYFGKFGGSFVPEPIAKAMKEIEQAYNLIAQNSDFIAELRKI >gi|197282964|gb|ABQU01000086.1| GENE 2 265 - 1686 1095 473 aa, chain - ## HITS:1 COG:no KEGG:Cla_0642 NR:ns ## KEGG: Cla_0642 # Name: not_defined # Def: conserved hypothetical protein, putative glycosyltransferase # Organism: C.lari # Pathway: not_defined # 24 302 1 271 401 70 23.0 1e-10 MIDKLAGGGASNPLDNTSITEVTIPNKTTIFMVCDEKYDFALANMIIGLKRYNEDLIDKI YVMYDGIDEETRGKIQSIWQDKIIFERYSNEDFLRDIQDNEVIKNSAFTKRYSKLIYCKY HIFDILRRARTNSAVFLDVDMLCLDSLQELIKQDDVDYLGAYLFERAFTKEYLEKYRSKK VDGVQGHNGGLYCVFKRIFDKAPANLTQECFEMLIDFCAKGGKLSIDEAVIGMIATFYDF SFRDARDLGYNVIPWHDTCEAIPLKLVHTCENTKFWSNPASLHVFGEWELNHKIWIKKYG GKDTINLQNISFQKLKNKGQVWHFLNTFEVKQQIANALVLLFYNLNLRFRIEYKETMFII SCDHINFGVIFPQIFSRLIFEICPTKPMQISYKLQNLLGQYGFSITNNTLQKTYEQNQYN AFLSETTSVLNAFCSEKILINPYNTQQVLEAKSYGNCVQNDLPKQIKDLEFKL >gi|197282964|gb|ABQU01000086.1| GENE 3 1944 - 2936 820 330 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase [Acinetobacter baumannii SDF] # 4 327 12 344 356 320 51 4e-87 MQKLNYKDSGVDIAEGNALVENLKGLVKSTFNANVLGGIGSFSGAYALPSGYKEPVILAA TDGVGTKLRLAIDYGILNGVGIDLVAMCVNDLICNFATPLFFLDYYATGKLDKTKALEVI KGITQGCLEAQCALIGGETAEMPGMYEKEDFDLAGFAVGIGEKEIIQRGSQAKVGDVLIA LPSSGIHSNGYSLVRKILTQNNIDLESIFEGKPLIETLLTPTKIYVQTFKKLQDKINALA HITGGGLIENLPRCLPNNIDAMIEERKIQTPPIFNLLSKYTEESDKYRTFNMGVGMVLVC SQENADLVAKESGGYIFGELKEGNNKVIFV >gi|197282964|gb|ABQU01000086.1| GENE 4 2995 - 3711 613 238 aa, chain + ## HITS:1 COG:no KEGG:WS2167 NR:ns ## KEGG: WS2167 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 5 235 8 229 233 78 29.0 2e-13 MLDSIKRFFKIYPIPIFVLLLVFIIYYSVFEILRKQEIVSTQPITEAESMQNEFVAPLQP QQNTQTQKNENHIPQKPIPTKQETPTQNTKTYITTKVRALNIRQEPNTTSPIIGKLTSNM QAVILEDNGEWLLIGAAQNNNTLGWVLKNYTKILPKTPIIHDMEEITLDIHIPQYYTSKV PRLNIRQEPNTTSNILGTLTPNDSIEILETKGDWVRFQDINPSSQKNGWVMRRFLKEI >gi|197282964|gb|ABQU01000086.1| GENE 5 3714 - 4502 552 262 aa, chain + ## HITS:1 COG:HP1249 KEGG:ns NR:ns ## COG: HP1249 COG0169 # Protein_GI_number: 15645863 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Helicobacter pylori 26695 # 3 244 6 248 263 203 48.0 3e-52 MQFAVIGNPISHSLSPILHNTAFKALKINGFYGRYCLEDSKDFLCLKALHLKGANITIPF KETAFLHCTKVFGIAQQIKAVNTILFKDNQIFGYNTDALGFYQCVEKYPLKNALILGAGG SAKAVACILQEKGIHTTILNRSQARLDTFIELGFHTSTYENFTQKESYDIIINTTPSGLT NDSLPLDKTKLTSILESSQLAFDLVYGIQTPFLQLAKNLHIPFQDGKNMLINQAILAFEI FMESLDISFDKNLLIKSMQNAL >gi|197282964|gb|ABQU01000086.1| GENE 6 4541 - 5089 414 182 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229532345|ref|ZP_04421727.1| SSU ribosomal protein S30P; sigma 54 modulation protein [Sulfurospirillum deleyianum DSM 6946] # 1 182 1 171 171 164 47 4e-40 MNVTITSRHLELTDSIKDYILRLSQSLEKYNLDILSTRVVISYQEKKGKEKKKRSYMIDI TISIAKANTVVISQKDKDLYAAADLAFSRMHKILRRYHDKINYKQAIPSEEIMAAEILRN EATASNQEDEIVPMDLDLHKPLDIEDALERLKSSSQQFFVFNDKDSKMRVIYKRIDGKYG LY >gi|197282964|gb|ABQU01000086.1| GENE 7 5025 - 6287 692 420 aa, chain + ## HITS:1 COG:cca KEGG:ns NR:ns ## COG: cca COG0617 # Protein_GI_number: 16130952 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Escherichia coli K12 # 23 356 2 349 412 229 40.0 1e-59 MIKIPKCVLFTKELMVNTDSIKKIYLVGGAIRDYLLGFPTKDKDYVAVGSDGKDFINYPK VGKIFPVFLIDSHTQIALARTETKTSNGYNGFSYQTKNITLIQDLKRRDLTINSMALDLQ TRHIIDPFNGKKDLQNKILRHTSQAFCEDPLRVLRIARFRAKLGIKWKIHPSTKALIYTM KKELKFLEPNRIYQETITALSYKNSHLFFETLFELGVLEEIFPSIYTLTTLKEGSLYHLE SSVFVHTMEVLKLLCSNSTLLKLTALYHDIAKPYTYRHFGNSNGHDNPKIVESLIDMQIP KNIKKQMLILIANHIKISHLSQMRPNKILHFFESFNKDKMLLKVQIKLFYADQKGRISDY QIPSLPLKLIFKIFYALQDYSPQEWIISQANKPSGDTIKNYVLNSKIKLIKSILQKENCL >gi|197282964|gb|ABQU01000086.1| GENE 8 6294 - 7571 999 425 aa, chain - ## HITS:1 COG:BS_nrgA KEGG:ns NR:ns ## COG: BS_nrgA COG0004 # Protein_GI_number: 16080704 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Bacillus subtilis # 25 425 5 401 404 355 52.0 1e-97 MKKVLLFLFFCVFGFGAENEVSAVDTLFLIACSGLVLLMTPALGMFYSGMVNRNNVLSTT INSIMLYALVAIQWVIVGYTLAFGDDIGLVIGNLNHIFLVGIEGESIGMISENLFVFFQM LFAVIGAAIITGSFAERMRFGVLLIFILCWSTFVYDILAHWVWGGGWLMKIGSLDFAGGG VVHIAAGVAGLVGCIMLGKRKYAKGIVPHNLPLSFIGAVFLWIGWLGFNTGSALSVNSVA VNAFLTTNFAVVGAMLSWMMIEWVKFGKPTLLGSITGIVAGLVSITPSAGFVTPFVAVLI GFLASPICFFAISYLKSKFGYDDTLDAFGLHGVGGIWGGIATGLFATSSVNGIVSKEAAS EGLFYSGDFALLGVQIVAILACFVLSAITSFVILKVISFFSPLRVEEVQEVNGLDQSLHG EIAYR >gi|197282964|gb|ABQU01000086.1| GENE 9 7596 - 7943 511 115 aa, chain - ## HITS:1 COG:aq_109 KEGG:ns NR:ns ## COG: aq_109 COG0347 # Protein_GI_number: 15605696 # Func_class: E Amino acid transport and metabolism # Function: Nitrogen regulatory protein PII # Organism: Aquifex aeolicus # 6 115 3 112 112 100 52.0 7e-22 MEKIYKVEIITRSEKLNILKDSLSQKGIKGMTVSNVMGAGNQKGKTEVYRGNEMTIDLLP KVRVEILSKESMVNEIVEVAKKCLNTGNVGDGKIIILPVSNVIRIRTNEEGTEAI >gi|197282964|gb|ABQU01000086.1| GENE 10 8091 - 9098 905 335 aa, chain + ## HITS:1 COG:Cj0500 KEGG:ns NR:ns ## COG: Cj0500 COG2603 # Protein_GI_number: 15791864 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Campylobacter jejuni # 9 304 9 302 332 251 42.0 1e-66 MNQTLPIDDFLAQKFSTIIDVRSPKEYEHSHIPNAINFPVLNDEEFQQIGTLYKKDSFNA KILGASFVCKNISHHLLNLKHQITPARPFGIYCARGGMRSNSFGIVLKNIGYRVVVLKGG YKSYRTEVTQTLQDKPNHNFITLIGPTGSGKSEIIHAFDDSLDIEGIARHLGSSFGGIYG MQPSVKMFQNLLFERLKSLTNSPFVLVEGESKKLGNLILPSPLYQAYHNAPKILILSPLE QRIQRIVAQYGKISQDFFKNSMQKIAPFMKKQFWQEAQEAFLRRDLQKVAEILLVEYYDK VYKKESFKSVIYYQNTTQVIEEIKAFAKEFYKIKE >gi|197282964|gb|ABQU01000086.1| GENE 11 9102 - 10196 1380 364 aa, chain + ## HITS:1 COG:jhp0157 KEGG:ns NR:ns ## COG: jhp0157 COG1186 # Protein_GI_number: 15611227 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Helicobacter pylori J99 # 1 358 1 360 363 435 68.0 1e-122 MDSYEYGELLKELEIKRQNIEKIMQPSKLEARIKEIETLEQQKEFWEDSKKAGEYQKEKK RCERQLEKFQEANLALNDAKELFEISSDDEQTLNELFSEANSLEEQIKKAEIEVMLSDEL DSNNAIFTITPGAGGTESQDWASMLYRMYLRWAERRGFKVELLDYQEGDEAGIKDASFII KGENAYGYAKVENGIHRLVRISPFDSNAKRHTSFASVQVTPEIDDNIEIEIEEKDLRIDT YRASGAGGQHINKTESAIRITHIPTGIVVQCQNDRSQHKNKATALKMLKSKLYELEAQKR NEQTSNDDKSEIGWGHQIRSYVLAPYQQIKDLRSNIAYSNVEAILDGDIDAILEGVLIHI NSKQ >gi|197282964|gb|ABQU01000086.1| GENE 12 10220 - 10714 677 164 aa, chain - ## HITS:1 COG:jhp1088 KEGG:ns NR:ns ## COG: jhp1088 COG0716 # Protein_GI_number: 15612153 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Helicobacter pylori J99 # 1 164 1 164 164 185 55.0 3e-47 MEKIGLFYGSDSGNTQKVAEKIAQKLQNVEIFDVAKANKEELKGFKNLILATPTYGSGDI QGDWEDFLSSLKEEDFDGKVVALVGLGDQDTYGDTFCNGLYEIYKLLKNAKIIGQTSTKG YEYEDSDSVVDGKFVGLILDEDNQEDLTEQRIQEWCEEIKGQFA >gi|197282964|gb|ABQU01000086.1| GENE 13 10941 - 12665 514 574 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 [Haemophilus influenzae 7P49H1] # 1 570 9 552 618 202 26 1e-51 LFVIVCVLAMAVVSGIILNKLKIPTIIGYIVTGVLTAYVFHFRVEDSADLNGIAELGIVF LMFMIGLDFSFKKMSSIKQEVFLFGGLQIGLSMLTFFSICYFIFGFNFDTSIIVASAVSL SSTAIVLKHLNEINQTKTSYGVASVGILIFQDLAVIPILLMIKLLSSKNLALSDLMITTG ISAVIVVILLLLPGRFLAKLILRYSAKMKTDEIFVGTVFLIVLGSAYLSQYFGFSLTLGA FLSGMIISSTPYKYQVASVLVYFRDLLLGIFFITIGMQVDIAFLVKYFAIILILVALTLF AKTLIMFIFLSFFRGAKIAMKIALSLSQIGEFSFAIFLLASQHKILNLQLDGGILKYIFG AEFFASITSTEIHQFLTLMVIFSMIATPFILDNLDKCTAFALKLMRIPQKFTKKQTEDNQ EQEENPKKRIVVCGYGLVGQKIFQFFKDYDIEIFGVDSNYERVEKGIIQGDKIIYGNITD KMIFREIEIEKVTAIILCIESPVEIEKACRHIISLSRYTKIIVQTRDNALEAELKAMGLY GVINSTREIATTLSNLALEAIKEEEEKQEEKPES >gi|197282964|gb|ABQU01000086.1| GENE 14 12662 - 13435 805 257 aa, chain - ## HITS:1 COG:Cj0343c KEGG:ns NR:ns ## COG: Cj0343c COG0730 # Protein_GI_number: 15791711 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Campylobacter jejuni # 27 246 21 243 261 159 48.0 4e-39 MEFLALEPLNILGLLGVGILSGILAGFFGIGGGAIIVPMMILFGNDIKIAIGISIMQMIF SSIYGSYVNYKKKNLDFKDGVFVGIGGLIGASFSGVIVDNVPSNILEIVFTCFIVYSIIK FFRANAYGGERRIDEGRNSALFLIAGGCVVGIFAISLGIGGGMMLAPLLAYYLGYSSKKI VPISLFFVIFSSVSGFTSLALHGYVDYKQGFLVGIASLIGVRIGIWILSIIDAKKHKYAL LAMYVFVLAIMLEKMIV >gi|197282964|gb|ABQU01000086.1| GENE 15 13712 - 14578 863 288 aa, chain + ## HITS:1 COG:Cj1504c KEGG:ns NR:ns ## COG: Cj1504c COG0709 # Protein_GI_number: 15792818 # Func_class: E Amino acid transport and metabolism # Function: Selenophosphate synthase # Organism: Campylobacter jejuni # 1 278 29 298 308 227 44.0 2e-59 MQSADFITPLVNDPYTYGQIAAANSLSDIYAMGGEVKTALNLLMWDNCHLDSQMIEAILE GGLSKIKEAGGVLLGGHTIADKEQKYGLSVTGIIHPQKIWHNNTAQIGDVLILTKPIGMG ILTTALKADMLDSPTQVKISEIMATLNQKAAKIASKYTIHACTDITGYGLLGHLYEMTNP SISLHLYSNQIPLLQEAIEFAQMGIIPGGSHSNQKAIAKHCHFKLTPNSIYQNLEILLFD AQTSGGLVFATPQNQAQELLNELKNEGVTYAQIIGEVLPADNFPLNIS >gi|197282964|gb|ABQU01000086.1| GENE 16 14765 - 14881 66 38 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLDISYNQTKAKQKNNAQLIIKFNIKEKQRFYKRIFDK Prediction of potential genes in microbial genomes Time: Tue May 24 02:58:32 2011 Seq name: gi|197282963|gb|ABQU01000087.1| Helicobacter pullorum MIT 98-5489 cont2.87, whole genome shotgun sequence Length of sequence - 2064 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 2063 2013 ## gi|242309316|ref|ZP_04808471.1| predicted protein Predicted protein(s) >gi|197282963|gb|ABQU01000087.1| GENE 1 2 - 2063 2013 687 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242309316|ref|ZP_04808471.1| ## NR: gi|242309316|ref|ZP_04808471.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 17 687 1 719 720 355 51.0 6e-96 SPKLKDSKVSKTSKDSMKLESSPKLDSKTSQKSNKESETKQAKKIQRAKNTCDSKQSKKS KNSSKIKSFIRTIPISIALASALSSQAVANWNNDGKACQNGYNCTISSDLQLSNVGGNIQ IIASGSTGTLSINQGVHVQKVWEDGILGSQNGVFEIKGATQGITNNGTVTSIGSWRNIVV LSGGSLGSIVNSSTGTLISKNNSVLLLFGRVGSIENAGTIMRTGGGSAAYHSLFAIEGQV GADLTFSNQSLTQSAVGARNIIWTQGGATTSLGGIVAKDNSRLEGHFDFNNRFTGESITF QDSAKMTGNISLEGNARITNGITIRDSGTIAGNISLAGTSAIANGITIGGNSTGGSGNNA SLNGNITMDGTSAIANGITITNGGTYAGTIHTKNQSDIDSITIASGGVVGSNTANSMILS SSNSTIHNIDIQNGGTMYGNIEAHWAQGANAVNQKDGNIGDVSITGRLQGDIVLQNKVFM NSLTMSDNGTITGNIRIGAIGSDDQFPTLSTITLRNNSGINAITLGGASAHATIDSLTLE GTSSIGTITNNSNGTISNIALNGTSTITNGITNNSGGNIGTITSNTNNGVNNAITNEGTI AKLDIRNVNSGSSGNGGTINYIGSGIVTEEIRVEGGATLSIDGGTGTITLDSDIGSKLNL LADSIFDGNLRNAGSISAWNNVSNIDG Prediction of potential genes in microbial genomes Time: Tue May 24 02:59:09 2011 Seq name: gi|197282962|gb|ABQU01000088.1| Helicobacter pullorum MIT 98-5489 cont2.88, whole genome shotgun sequence Length of sequence - 22791 bp Number of predicted genes - 28, with homology - 26 Number of transcription units - 6, operones - 5 average op.length - 5.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 71 - 1339 1279 ## COG0065 3-isopropylmalate dehydratase large subunit 2 1 Op 2 . - CDS 1342 - 1959 770 ## COG0040 ATP phosphoribosyltransferase 3 1 Op 3 . - CDS 1956 - 2594 639 ## COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor 4 1 Op 4 . - CDS 2599 - 3609 1118 ## WS0802 hypothetical protein 5 1 Op 5 . - CDS 3599 - 4189 679 ## WS0801 hypothetical protein 6 1 Op 6 2/0.000 - CDS 4201 - 4632 582 ## COG0756 dUTPase 7 1 Op 7 3/0.000 - CDS 4641 - 5111 614 ## COG0782 Transcription elongation factor 8 1 Op 8 . - CDS 5191 - 6324 739 ## COG0763 Lipid A disaccharide synthetase 9 1 Op 9 . - CDS 6317 - 6976 653 ## gi|242308874|ref|ZP_04808029.1| predicted protein 10 1 Op 10 2/0.000 - CDS 6966 - 7580 686 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 11 1 Op 11 . - CDS 7552 - 8724 1381 ## COG0739 Membrane proteins related to metalloendopeptidases - Prom 8753 - 8812 11.2 + Prom 8602 - 8661 5.3 12 2 Op 1 . + CDS 8806 - 8913 84 ## 13 2 Op 2 . + CDS 8974 - 9168 270 ## WS0262 hypothetical protein 14 2 Op 3 . + CDS 9221 - 9466 342 ## gi|242308878|ref|ZP_04808033.1| predicted protein 15 2 Op 4 . + CDS 9496 - 9951 566 ## WS0260 hypothetical protein 16 2 Op 5 . + CDS 9968 - 11797 2538 ## COG1256 Flagellar hook-associated protein + Term 11818 - 11859 -0.5 17 3 Op 1 . - CDS 11794 - 12543 548 ## WS0258 hypothetical protein 18 3 Op 2 . - CDS 12549 - 13223 758 ## Cla_0009 possible outer membrane protein 19 3 Op 3 . - CDS 13281 - 14483 1237 ## COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain 20 3 Op 4 . - CDS 14500 - 15072 683 ## COG0353 Recombinational DNA repair protein (RecF pathway) - Prom 15219 - 15278 7.1 + Prom 14909 - 14968 3.8 21 4 Op 1 . + CDS 15011 - 15133 86 ## 22 4 Op 2 . + CDS 15210 - 16319 1213 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain 23 4 Op 3 . + CDS 16343 - 17686 1048 ## COG0471 Di- and tricarboxylate transporters 24 5 Tu 1 . - CDS 17764 - 18312 635 ## JJD26997_0342 hypothetical protein - Prom 18344 - 18403 9.8 + Prom 18325 - 18384 9.2 25 6 Op 1 11/0.000 + CDS 18441 - 20252 1817 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 26 6 Op 2 11/0.000 + CDS 20262 - 21299 850 ## COG4174 ABC-type uncharacterized transport system, permease component 27 6 Op 3 2/0.000 + CDS 21301 - 22320 773 ## COG4239 ABC-type uncharacterized transport system, permease component 28 6 Op 4 . + CDS 22307 - 22789 252 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 Predicted protein(s) >gi|197282962|gb|ABQU01000088.1| GENE 1 71 - 1339 1279 422 aa, chain - ## HITS:1 COG:aq_940 KEGG:ns NR:ns ## COG: aq_940 COG0065 # Protein_GI_number: 15606262 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase large subunit # Organism: Aquifex aeolicus # 1 421 1 422 432 478 54.0 1e-134 MGQTITEKIFSEHVGKKVYAGEIIDCPIDMVIGNDITTPLSIKAYEQSGAENLANPDGFC IVMDHFIPAKDIASANQARISRDFAKKHKLKYFFDEKDMGIEHALLPERGLVVSGDVIIG ADSHTCTHGALGAFSTGMGSTDLAYAMITGKNWFKIPSAIKVEFIGKPAKHIYGKDLILE VIRQIGVDGALYQTLEFCGEGIKYLGMDDRFSLCNMAIEAGAKNGIIAPDEITREFLKSR PFLRANPREFYSDADANYTQTIQIDISKLEPVIAYPFLPSNGKSISQALKDDLKIDQVFI GSCTNGRLSDLKIASEILKGKKVHQDVRLIITPGTQNIYKEAHKLGYIDILLEAGALISN PTCGACLGGYMGILGDNERCVSTTNRNFVGRMGARNSEVYLANSAVAAISAIKGKIADPR EA >gi|197282962|gb|ABQU01000088.1| GENE 2 1342 - 1959 770 205 aa, chain - ## HITS:1 COG:aq_1613 KEGG:ns NR:ns ## COG: aq_1613 COG0040 # Protein_GI_number: 15606728 # Func_class: E Amino acid transport and metabolism # Function: ATP phosphoribosyltransferase # Organism: Aquifex aeolicus # 1 193 1 195 214 157 44.0 9e-39 MIKVALPKGRIAQEALKIFEDFLQTSLDFEDRKLILKKKDFEFMLVRSQDVPVYVERGAA DIGVVGLDVLEEKQSRLVRLLDLGFGKCKVAIGSPNDYVLDFSKPKLKIATKMENITKAY FAKKAISVDIIKLYGSIELAPLVGMADAIVDLVETGSTLRQNNLKIDEVIMEVSAYLVAN SNSFYAQKREILEIQKYFKNFIKKD >gi|197282962|gb|ABQU01000088.1| GENE 3 1956 - 2594 639 212 aa, chain - ## HITS:1 COG:Cj0394c KEGG:ns NR:ns ## COG: Cj0394c COG1521 # Protein_GI_number: 15791761 # Func_class: K Transcription # Function: Putative transcriptional regulator, homolog of Bvg accessory factor # Organism: Campylobacter jejuni # 1 201 1 201 209 189 49.0 3e-48 MILCDIGNSFLHFYYRGRVWREAKTQLTPKDPKEVIIFISVNEDSAKSLLDSHPYCFDLL PFVSLDTNYKGLGVDRIVACNAITDGVIVDAGSAITIDIMHQAIHLGGCIMPGISRYREM FSSIAVLDCEFNLGVALDTFPQNTKDAVSYGMLKSILLMIENLSKGKKIYFTGGDGKFLS RFFENCIYDDLLIFKGMQNIITNKIISKGIQL >gi|197282962|gb|ABQU01000088.1| GENE 4 2599 - 3609 1118 336 aa, chain - ## HITS:1 COG:no KEGG:WS0802 NR:ns ## KEGG: WS0802 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 11 335 9 331 333 283 45.0 6e-75 MQNNLIKFLIGALLLFLISGCGSKYYFEPKDEEVKDSVAYSDSLPSDIIFITRDGATLSN GQFITKYSQIPEATLPKNGRYLGESEKYYLATTNNKELLLIDKETHSQNIIALEGNPISV ALDNNLAAIIFDNNSFVLYDLQLGKAMYKQESTPAPTNNTLIASPYFLSDIAIIPTLDGK LVIVDRNNFKMIRNIVVNGDKHFNNVIFLEAINDRMVAATPKRVISVSPNVINTFDANLQ DILFFGDQIVLFTTEGEVILTDKDLNEIKRQKFPFAHFTAANHGEKIVILETRGYMITLS NDLSNYEIYSLPNKIDTPAFSGTGKIFVGDEILEVK >gi|197282962|gb|ABQU01000088.1| GENE 5 3599 - 4189 679 196 aa, chain - ## HITS:1 COG:no KEGG:WS0801 NR:ns ## KEGG: WS0801 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 191 1 199 202 129 45.0 7e-29 MSLKQNVNYIKEEINSDEKMLEGLIRIESWYKRYKIPLIILVALLVVGGVGYSLNNYYQE QQSQKNAQFYQKALMGDENAIASLKDSQSKLYDLYLFQKALKEQDAKTLKTLESSKDPMI AKLSKQQNASLDKNLQELNSSNSTDLGYLEAAYLEIQKGNIKEAKSILAKIPNDSTIKEI ANALEHLTIKGINNAK >gi|197282962|gb|ABQU01000088.1| GENE 6 4201 - 4632 582 143 aa, chain - ## HITS:1 COG:jhp0799 KEGG:ns NR:ns ## COG: jhp0799 COG0756 # Protein_GI_number: 15611866 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Helicobacter pylori J99 # 4 142 3 141 145 154 53.0 4e-38 MATLKIKKLTPEAILPKYQTSGSAGFDLCAIQSTTIPAGKWALVPTGLAFSFKEGYEVQV RPRSGLALQYGITLLNTPGTIDSDYRGEIKVIMMNLGEEDFIINKGDRIAQAVLCRVKQA KIKEVQSLDSTKRGKGGFGSTGK >gi|197282962|gb|ABQU01000088.1| GENE 7 4641 - 5111 614 156 aa, chain - ## HITS:1 COG:HP0866 KEGG:ns NR:ns ## COG: HP0866 COG0782 # Protein_GI_number: 15645485 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Helicobacter pylori 26695 # 1 156 6 161 164 192 62.0 2e-49 MTEYGYNKLISELKNLKEVERPNNIKEIDAAREHGDLKENAEYHAARERQLFLDARINEL TQLVAEARVIDPSTINHDKVSFGSTITLEDLESEEQFCYTIVGATESNPDKGLISYHSPL AKQLLGKVVGDEVTISLPKGKVDYEILEICYKKIEF >gi|197282962|gb|ABQU01000088.1| GENE 8 5191 - 6324 739 377 aa, chain - ## HITS:1 COG:jhp0801 KEGG:ns NR:ns ## COG: jhp0801 COG0763 # Protein_GI_number: 15611868 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipid A disaccharide synthetase # Organism: Helicobacter pylori J99 # 7 367 4 353 360 278 44.0 1e-74 MNKPIKIFISALEYSANIHLSYLIQTLQKQYGECHFYGIFDSKILGFSSNFSPNEFRIMG FSGVLKLIPRFFKIKKELIVLAKQCDIAIFMDSSSFNIPLLKALSGDLNKPYLVYYILPQ VWAWKAYRAKILAQICDELWGILPFESAYYPKEANIAYVGHPLLDEIPFSREGRVDTGII AFMPGSRISEIKALFPIFKSLAKKLKALQKQPLLIAPKHFENCDLSKIYGNLEDFSIVYD TYEGLAKCEFAFVCSGTATLESTLLGIPTILAYKARKLDYWIAKSLVKLNYIGLANIFLE FFYFGSPKDNKTPQNFPIHPEFLQEEVNPNTLFWAMQNYDYSKFFAQKKILLEYLKNGSA KNCVQKIENFAKNMSKN >gi|197282962|gb|ABQU01000088.1| GENE 9 6317 - 6976 653 219 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308874|ref|ZP_04808029.1| ## NR: gi|242308874|ref|ZP_04808029.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 219 1 219 219 304 100.0 2e-81 MKHNFALQEITKKLDEIKEVWQIYEIFETQKKQFEEEYEILSQQREALIKNSNEISAKNA LLLSQNKELEIKNKELEAQIAQKNKIIQEMDCVQETQKNCQETIPADSQKDLQSDFLNLQ TQCENIHSSLSQLKITLPPKPVALERLEVSYQNYQKLLAKPANSYVLLSQAQEIYEQLEN LIATFKSLDLETSKILLEIRDLKDYFCLHSKASQESNLE >gi|197282962|gb|ABQU01000088.1| GENE 10 6966 - 7580 686 204 aa, chain - ## HITS:1 COG:HP0507 KEGG:ns NR:ns ## COG: HP0507 COG0494 # Protein_GI_number: 15645134 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Helicobacter pylori 26695 # 16 200 24 208 212 192 50.0 4e-49 MMKPPKEITNIRFCACESSLYIKPKRMLFCENGKERSWDIIEAHDSVAVLLYHPKKDSFV IVKQFRPAVFLKETIRQTQNLKSEIGYTYELCAGITDKPNKTLKEIAQEEILEECGYNVE LENIEKITEFYSSVGFAGSKQTLFFATIDEKCKVHQGGGVDDENIEVIFIPRKQAYEFIL DESYPKTSGIMFAFLWFLKERNEA >gi|197282962|gb|ABQU01000088.1| GENE 11 7552 - 8724 1381 390 aa, chain - ## HITS:1 COG:HP0506 KEGG:ns NR:ns ## COG: HP0506 COG0739 # Protein_GI_number: 15645133 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Helicobacter pylori 26695 # 16 358 50 391 403 318 48.0 2e-86 MQAAEIKESKWENGQTLLTFFEKNSIPLNVYYDLEREDKELADEIISGNTFYTLYDGETL LQALIPIDENSQLHIYKQGDSYGMRAIPIVYFQKERTIALSVESSLYNDIVKYTGDTLLA SDFIQAYKGSINFKRQIKKGDKLAIIYERKYRLGKVFGSPLIKASTLETSDEQKYVVRYE DGHFYDLQGNNLNKYLFMIPLNYKRISSSFSMGRKHPILGYKRPHLGTDYAAPRHTPIKA ASQGKVIFAGTKGGYGKTVIIQHENGYRTLYGHMHKINKGIRTGVYVSQGKQIGTVGSTG LSTGPHLHFGLYRNGSALNPQKHLRIATTKLKGKEKEQFLFFAKDYKGKLDTILATYAEY EPLKVTQNSYIVYLTQNSEIQDDETSKRNN >gi|197282962|gb|ABQU01000088.1| GENE 12 8806 - 8913 84 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MINVDYTTIKATFKDTIWLFTKNFRKICYTFSLKN >gi|197282962|gb|ABQU01000088.1| GENE 13 8974 - 9168 270 64 aa, chain + ## HITS:1 COG:no KEGG:WS0262 NR:ns ## KEGG: WS0262 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 2 62 4 65 65 65 46.0 8e-10 MKDWFVPSISFGLFIYFMLFVILYAIKIGGSDVPLYNTDGYIAPPKTDTEKFLQDISKSI KKAL >gi|197282962|gb|ABQU01000088.1| GENE 14 9221 - 9466 342 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308878|ref|ZP_04808033.1| ## NR: gi|242308878|ref|ZP_04808033.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 81 1 81 81 84 100.0 2e-15 MISHLMSNSAFSSAINQANNKNTAQINGAKNEQVEEKQKNSQVKTNASSSRVEEIKNAIK NGTYQINLKGSAEKLAQELLR >gi|197282962|gb|ABQU01000088.1| GENE 15 9496 - 9951 566 151 aa, chain + ## HITS:1 COG:no KEGG:WS0260 NR:ns ## KEGG: WS0260 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 150 1 141 142 90 42.0 2e-17 MSLQFLKDALEDIKALIAITEQDISDIKVANNESIFARIPQKEELTSSFIRKKEAYAKSI EDRLRKEYPNATLADLTYEDKQKLLGEGASEFTAQLHDKLEELKKLNYRFGKMSLAVSEF YNSLLRNIIPIEQQGYKKSSLSNSSFLKTEV >gi|197282962|gb|ABQU01000088.1| GENE 16 9968 - 11797 2538 609 aa, chain + ## HITS:1 COG:jhp1047 KEGG:ns NR:ns ## COG: jhp1047 COG1256 # Protein_GI_number: 15612112 # Func_class: N Cell motility # Function: Flagellar hook-associated protein # Organism: Helicobacter pylori J99 # 1 608 1 605 606 535 49.0 1e-151 MGGLLSSLNTPYTGLTGHQVMVDTVSNNIANANNEFYTRQVVRSAAQTPLLVSSNYAIGQ GLDTLTVERVHDEFTFSRYKKASMEKTYYDTSFSGLKEASSYYPEVDGVGIYNDLQNYFN AWKDLSTKAGDSAQKIALAEQASTLANNISATRERLVNLQQRLNDELKVAVDEVNRLGEQ IAQINKKIAEYENQQLNQKANDLRDLRDQYEFEINNLIGCDVFKEGLKGSACVDENIADF EEGYTLTIGGKSIVDGTSFHPLTLDNSQNESGIYSIKYLRSDHKEFNLTNSLSDGKVGAI LDLIRTEDVLTCNGTLGKLQVYINDLDTFANGLIEATNNIYAQSSQLEARSDALNINIQD ALTTSGYNINNGSFKVVMYNKQGEEIGTRTVNIDGLTNMQSILDQLNANVDGNGDANASN DFDDRFVATFNNDTKTFAITSKNPAEEIYISIQDNGTNFAGAFGVNRFFDGNDASNIQLA QSYKNDPTLIHAYREAVDGNFEVANMMQQLQYDKITFTDSEGNIQNETISGYFRFIASKV ASQTESTQITQETKEAVYVSIKQEYKAISEVSVDDELVNLIKYQSGYSANAKMVSTIDEM LNTLLGIKS >gi|197282962|gb|ABQU01000088.1| GENE 17 11794 - 12543 548 249 aa, chain - ## HITS:1 COG:no KEGG:WS0258 NR:ns ## KEGG: WS0258 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 16 245 6 244 251 216 48.0 6e-55 MHSPIKLPKSLSKKFLYHLLEEQYEAFNHYHAISIDYPDPLGIARKFKNEKVALFCALFA YGNARAIVRFLETCKLDCLQESQFTQCTLKPYRFQTRDEIQDFFEVLLEVESLYEIFYKY YKKDSLLKGIESLQYLLYQKLSRTTSGLEFLIGKPQSNSPLKRWNMFLRWMVRKDSVDLG MWEGIRTSDLILPLDTHTFRVCQRLGILKRKSYDLKAALEASEFLRGLNPKDPIKYDFAL YRIGQLGLI >gi|197282962|gb|ABQU01000088.1| GENE 18 12549 - 13223 758 224 aa, chain - ## HITS:1 COG:no KEGG:Cla_0009 NR:ns ## KEGG: Cla_0009 # Name: not_defined # Def: possible outer membrane protein # Organism: C.lari # Pathway: not_defined # 29 224 15 214 214 63 31.0 5e-09 MKIVFFLVLFVNLFFGYEAYQNTASSPQTSYHPLYEERRNRLLGVYGTFNKVESDANLNI SGFASQNHDLSEKPFGFGLQMGYLLSQNHRILVNFENTLKKNGFSYRSLTLGYAFTPRIP NTQKWRLLLGVNAGIAFGSFDSGSFVINDSAMGKLDYTGLTYGVKAGAIYETRFGELEFG IQSRRLDFGDESSSVIINDTPTGTNLDLSETSNTGFFFGYNFLF >gi|197282962|gb|ABQU01000088.1| GENE 19 13281 - 14483 1237 400 aa, chain - ## HITS:1 COG:BH4038 KEGG:ns NR:ns ## COG: BH4038 COG3263 # Protein_GI_number: 15616600 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain # Organism: Bacillus halodurans # 14 398 9 394 490 262 41.0 1e-69 MTIAQIVANFNFYIVIIGVILFISVYASKISEKIGIPLLLIFLGIGMLLGSEGIGGIEFD NALLTQAIGTMALIFILYSGGLDTFWEEVKPVALQGFVLATIGVLITAFVMACFIYVILD FTFLESLLLGSVVSSTDAAAVFMILRSQKIKLKNNIRPLLELESGSNDPMAIFLTIVVLQ LITMPEANSMSEWLLYFVMQFAIGGLLGIICGYLFPKICQYINISQAGLYPLISVAWLFM IFGLSSLLNGNGYLSIYIAGIVTNKFAFPNKAHIISFHDAIAWMMQIIVFLVLGLLVFPS ELPSVAIQALILSFVLIFIARPISVFASLVKSRYNFKEKAFISWVGLRGAVPIILATYPY AYKLTNSHMIFNMVFFMVFISVLLQGITLGFVARKLDIVE >gi|197282962|gb|ABQU01000088.1| GENE 20 14500 - 15072 683 190 aa, chain - ## HITS:1 COG:HP0925 KEGG:ns NR:ns ## COG: HP0925 COG0353 # Protein_GI_number: 15645541 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Helicobacter pylori 26695 # 8 189 11 192 193 199 50.0 3e-51 MKSIPESFAKLVESLEKLPSIGKKSAMRLAYFLAFEDKLSALQIAHNIESCMQELRICEE CFGISKEPICEICSNSMRNNGELCIIASPKEIFLLEESGEFNGKYFVITSLETLDMKALE RKIIKNNIREIIFALSPSLSSDSLMLYLEDKLSHLDLQFTKIAQGVPTGVSLENIDQLSI IRALQSRVKI >gi|197282962|gb|ABQU01000088.1| GENE 21 15011 - 15133 86 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLGSFSKDSTSFAKLSGIDFIKMPWILFGYFYKLLLVDFI >gi|197282962|gb|ABQU01000088.1| GENE 22 15210 - 16319 1213 369 aa, chain + ## HITS:1 COG:Cj1260c KEGG:ns NR:ns ## COG: Cj1260c COG0484 # Protein_GI_number: 15792584 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Campylobacter jejuni # 3 369 2 372 373 342 51.0 7e-94 MEEFDYYEILELQRNASGDEIKKAYRKMALKYHPDRNPDDKEAEEMFKKVNEAYQILSDK EKRQIYDTYGKKGLESSGFGFGDMEGSIFDIFNSVFGGGFGGFGQRTKKNEKYSRDLGIE VELTFQEAVFGCKKEIEIIYKKSCESCKGTGAKEGKVTTCSACKGSGRETFSQGFMTFAQ TCSKCHGSGQMIAENCDKCHGKGYKEEKEKFEVNIPEGVDSHNQIRVAKHGNIMPDGTRG DLYIEIFVQEDEHFIRHHNDIYLEIPVFFTLVMLGGTIKIPALTKELELKIPIGVKDKQQ FVFHGEGVKSVNGNKRGNFIAVVNITYPTKLDEKQKTLLNQLHESFGYEEAKPINCLEGL VDKIKNWFK >gi|197282962|gb|ABQU01000088.1| GENE 23 16343 - 17686 1048 447 aa, chain + ## HITS:1 COG:YPO0759 KEGG:ns NR:ns ## COG: YPO0759 COG0471 # Protein_GI_number: 16121074 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Yersinia pestis # 26 447 37 455 456 434 59.0 1e-121 MESIKKSLIIIAIDILIFALLYTFLPFERNANIGICILIFVGILWITEATHTAITALCVP FLAVIFGLENTSSALKTFADPVIFLFFGGFAIASALHIQALDRFIANYLIYLAKGKMSLA IILLFCVTALLSMWISNTATAAIMLPLALGILSNLKIDKDRNTFVFVLLGVAYSASIGGF GTLVGSPPNAIAAAYLQMNFFDWMKLGIPFMLIMLPSCIIILYLLLKPNLNTQFSIELEN IQWNHKKTITLIIFALTALAWIFSAKISSLLGGIDDLDTIIALACAIAIGVTKVATWKDI QNNTDWGVLWLFGGGLALSAILKDSGASAVLANGVAQIFGNSHWLIIIIVVAFFIIALTE FTSNTASAALLVPIFGVVGEAIGMPEHILPLVIGFGASCAFMLPVATPPNAIVYGTGYVK QIEMMKYGVWVNLFSIVLITIFASLVW >gi|197282962|gb|ABQU01000088.1| GENE 24 17764 - 18312 635 182 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0342 NR:ns ## KEGG: JJD26997_0342 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 3 164 6 167 184 171 52.0 1e-41 MTKQFRNLHIYLSLFFLPVALMYALTGVLYISGFDQDSGATKNTYIFNAEIPKGGEIDAM LKYLEENNLPLPAKTEPKPNKSGALSIGGTHYSASIAQSGENQWTINTTKRSLIGDMIML HKAKAKWYFNVLAIGFGITMVLLYLSGLMITLFNSKKNRNIQYGTIFAGCLVSIVLGVLS VM >gi|197282962|gb|ABQU01000088.1| GENE 25 18441 - 20252 1817 603 aa, chain + ## HITS:1 COG:PA1810 KEGG:ns NR:ns ## COG: PA1810 COG4166 # Protein_GI_number: 15597007 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Pseudomonas aeruginosa # 35 592 41 598 615 588 50.0 1e-168 MRYLLFLFLLNFSLFAADTYSNNAFAINGEVKYKNFKHFDYVNPNAQKGGHIKEYAIGTF DSFYDFLLKGMSAQGLHLIYDTLMVRSYDEPSSQYGLVAKQIQRAKDNTFVIFHLNENAR FHDGKEITAFDVEFSFNTLARGENPSMARYYADIKEAIVVDKYTIRFNFKDSNNRELALI LGDLPILPKHYYEGIDFHSNSLRIPLGSGPYKLESFDAGRSVTYKRVENYWAKDHPTRIG HFNFDRITFEYYKDDSVALEAFKAGKYDYRQEMSAKNWALGYEGKALKEGEIIKQEILHS LSSGMQGFVFNLRKDFFKDIKTREALGLAFDFEWSNKNLFYNQYSRTKSFFDNSEFASVG VPLGEELKLLESFKNNLPPKLFTQSFELPTTTGNGSNRENLKKAQTLLKEAGYTMKNGKL YNPNNQPFVFELLLVSPAMQRVAVPFAKNLQSLGIEMKIRLVDVSQYINRLRTFDYDMIV AVFPQSLSPGNEQRFFWGSSAAKAEGSYNYAGIENPVVDSLIEKVINAKNYQELLITTRA LDRVLLWNYYVIPHFHTKTFRVAFWNFLEHPKITPIYNVGFETWWVNEEKLLKLQEKYPS FRR >gi|197282962|gb|ABQU01000088.1| GENE 26 20262 - 21299 850 345 aa, chain + ## HITS:1 COG:HP1251 KEGG:ns NR:ns ## COG: HP1251 COG4174 # Protein_GI_number: 15645865 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Helicobacter pylori 26695 # 1 344 1 347 348 414 64.0 1e-115 MGAYIFKRLLLIIPTLLGIITLNFFIIQAAPGGPVEQMIAKLESHNLQGEVSSGSTYKNQ GLDEATIAKINALYGFDKPLLERYFLMLKNYIVFDFGDSFYKNTSVVNLILEKLPVSISL GLWSTLLIYLISIPLGIKKAICNGTPFDNLTSTLIIIGNAIPTFLFALILIIFFAGGTYF SWFPLRGIVGDNFESLSLMEKIKDYFWHITLPVISLSIGGFATLTLLAKNSFLEEISKQY VKLAFAKGLSEKQVLYRHIFRNAMLLIISSIPAALLGIFLMGSLLIEIIFSLDGLGLLGY ESIITRDYPVIFGTLYIFTLFGLIATLISDLLYTLIDPRIHFQKA >gi|197282962|gb|ABQU01000088.1| GENE 27 21301 - 22320 773 339 aa, chain + ## HITS:1 COG:PA1808 KEGG:ns NR:ns ## COG: PA1808 COG4239 # Protein_GI_number: 15597005 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Pseudomonas aeruginosa # 7 332 9 335 339 390 59.0 1e-108 MGFFTTRHYTAFKKNKKAFYSLWIFLGIFLISLSAEFIANDKPLYIRYDNKNYFPIFKNY PETTFGGDFESDANYNDPYLQDLIRQKGFFIMPLIPYSYDTIIYNLPSPAPTPPTLSNWL GTDDLGRDIVARLLYGLQTSILFAIILTFFSSIIGFLVGAICGYFGGKVDLFGQRLIEIW SGMPILFILIIFASLLQPTFWTILLIVLLFSWIALVPFIRAEFLKVRNLEYIKAAKMLGV GHWRIIFYHILPNALIAMLTYLPFILCGSITTLASLDFLGLGLPPPSASLGEILSQGKNN LNAPWLGLSGFFTLSILLCLLVFIGEGLRDALRSENDNS >gi|197282962|gb|ABQU01000088.1| GENE 28 22307 - 22789 252 161 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 18 161 38 176 329 101 41 4e-21 MTILKVESLSLKLANFCLENISFELPKGEILGIVGESGSGKSMLGNAILQLLPNIQHQSG TIDFLGQNLLNLSQKQMQKIRGKEISYIFQEPLSALNPLHKIKKQITEAILIHNPTCPKD TLQKRILELLENVSLPPKVLDSYPHELSGGQRQRICIAIAL Prediction of potential genes in microbial genomes Time: Tue May 24 02:59:57 2011 Seq name: gi|197282961|gb|ABQU01000089.1| Helicobacter pullorum MIT 98-5489 cont2.89, whole genome shotgun sequence Length of sequence - 15224 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 8, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1066 181 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 + Prom 1120 - 1179 6.3 2 2 Tu 1 . + CDS 1327 - 1617 285 ## WS0571 hypothetical protein + Term 1680 - 1721 -0.6 - Term 1555 - 1585 0.4 3 3 Op 1 . - CDS 1623 - 4310 2228 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains 4 3 Op 2 . - CDS 4328 - 5065 912 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance - Prom 5213 - 5272 7.5 - Term 5329 - 5380 3.8 5 4 Tu 1 . - CDS 5397 - 5798 570 ## COG0735 Fe2+/Zn2+ uptake regulation proteins - Prom 5920 - 5979 16.0 + Prom 5886 - 5945 16.2 6 5 Op 1 23/0.000 + CDS 6159 - 7499 1557 ## COG0541 Signal recognition particle GTPase + Term 7517 - 7574 10.7 + Prom 7502 - 7561 3.4 7 5 Op 2 19/0.000 + CDS 7594 - 7827 395 ## PROTEIN SUPPORTED gi|239524562|gb|EEQ64428.1| 30S ribosomal protein S16 8 5 Op 3 12/0.000 + CDS 7827 - 8066 327 ## COG1837 Predicted RNA-binding protein (contains KH domain) 9 5 Op 4 30/0.000 + CDS 8066 - 8617 451 ## COG0806 RimM protein, required for 16S rRNA processing 10 5 Op 5 33/0.000 + CDS 8617 - 9321 441 ## COG0336 tRNA-(guanine-N1)-methyltransferase 11 5 Op 6 . + CDS 9311 - 9667 594 ## PROTEIN SUPPORTED gi|239524566|gb|EEQ64432.1| 50S ribosomal protein L19 12 6 Tu 1 . - CDS 9672 - 11411 1575 ## COG0210 Superfamily I DNA and RNA helicases - Prom 11608 - 11667 9.4 + Prom 11454 - 11513 8.9 13 7 Op 1 . + CDS 11643 - 13742 2076 ## COG0855 Polyphosphate kinase 14 7 Op 2 . + CDS 13742 - 15001 1049 ## COG0014 Gamma-glutamyl phosphate reductase 15 8 Tu 1 . - CDS 15007 - 15189 183 ## gi|242308906|ref|ZP_04808061.1| predicted protein Predicted protein(s) >gi|197282961|gb|ABQU01000089.1| GENE 1 2 - 1066 181 354 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 103 336 12 230 312 74 27 5e-13 NSPKILIADEPTTALDSTTQQQILELLQFLQKKLHLSILFISHDLLAVSKLCKKILVLKK GKIIESGDTNSIFNSPKNPYTKLLVESLTFHYNTQKNFGKTIMEVENLGVSYIVKKNFWG KALEKFEALKPLSFQLKEGENLGIIGESGSGKTSLGNAICRLIESNGTIKLLGQDFFSLK GESLRDFRKNIQMIFQDPFSSLNPKMTIYQILKEGLLAHKIPNYQTKITQALLDVSLDES FLERYPNELSGGQRQRISIARSLVLKPKILLLDEPTSALDKNTQKQILELLLRLAKQYHL SYICISHDLSVIASLCQSVIVLKKGEILERGDTQEVFANPKNAYVKKLLEASGI >gi|197282961|gb|ABQU01000089.1| GENE 2 1327 - 1617 285 96 aa, chain + ## HITS:1 COG:no KEGG:WS0571 NR:ns ## KEGG: WS0571 # Name: purH # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 2 83 82 165 173 79 45.0 3e-14 MNYVRNKIFLEQQYTIHYQNGWCFLQNGGNLFNEEIIKDGYGVVQYFDTSQPEIIEKLEI LENLARSQKRGLWKEWNQEMECLKSTLRQIAQESQK >gi|197282961|gb|ABQU01000089.1| GENE 3 1623 - 4310 2228 895 aa, chain - ## HITS:1 COG:Cj0338c_2 KEGG:ns NR:ns ## COG: Cj0338c_2 COG0749 # Protein_GI_number: 15791706 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Campylobacter jejuni # 313 895 1 580 580 531 50.0 1e-150 MRTLTIIDTFGFLFRSYFALPPLKNHEGFPTGLLTGFAKLIMQLHRDYPKDYLVFALDSK GENFRKQIDPLYKANRPEMPQDLKLQLEVAIKWVEDMGFKNISIEGYEADDVIASINKQA NQLKVNVRIISHDKDLYQLIDRDTFLFNPSKKEEIREEECIEKYGVSPSQFVDYQSIVGD SVDNVPGVKGVGAKGAASLLGAYQTLDGIYENIEKIPQKRIRELLLASKEDAYRSRELVR LRDDLLEDFDLSKCEMPQDCPLLNILDSLKHYDLNSILKKLHKNPITKKKIVQKQSMQEN TQEKQFIYKSHLINTDEKLRELLSTFTPEDIFSFDTETTSLEVRSAKIVGFSFSVNGVDS YYVPIAHNYLGVEEQVSYECAKEFIEYIFGCKYVIGHNLKYDLEILKTNFDFVLQDFSKI RDSMLLAWLLQSDALCNLDFLMKKYFNHEMIHYKDIVHKKENFSQILIQYACEYASEDAA ACYQLYFKLKGLVDERLMEIAKSVEFPFIQSLMNMELIGIKIDLEFFQELILESRERLHQ ISEEIFALANKRFNLNSPQQLATILFEELNLQAGKKTKSGFSTSESVLNSLYDTHPIIPK ILEYREFFKLYSTYIEPLSEHAKADLQHRIYTSFMQTGTSTGRLSSKNPNLQNIPVKTAQ GRRIRRGFIAKENHLLVSLDYSQIELRLLAHFSEDEAMIEAFLKDADIHLETAKKIFGED MAQEKRAIAKSINFGLIYGMGPKKLSETLKITFQEAKTYIQNYFTSFPTVKEFLKNQEEF ILENGYSKTLLGRMRKFDFEGVQEYQKAAFLREGINAIFQGSAADIIKMAMNAITKANLE SKLLLQVHDELIFEAPKEIAKKESEEIAKIMENITTLKVPLKCTISIGENWGELK >gi|197282961|gb|ABQU01000089.1| GENE 4 4328 - 5065 912 245 aa, chain - ## HITS:1 COG:HI0056 KEGG:ns NR:ns ## COG: HI0056 COG0861 # Protein_GI_number: 16272030 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Haemophilus influenzae # 1 238 1 234 237 239 63.0 3e-63 MFEWIFSAEMWIALATLIGLEIVLGIDNIIFIAILVGRLPKEQRQKARIFGLSLAMITRL LLLLSLFWIMKLTTPLFSVFSQEISGRDIILILGGLFLIAKSTLEIHHDIDNAGEKSDED ILKEGAKRGFFSVLIQIAILDIVFSLDSVITAVGMVSNIEIMMIAVIVAVGVMMIASKSI SEFVDENPTIKILALAFLILVGVTLVAEGLEFHISKGYIYFAMAFSLGVESINIYIKKKR LQIKG >gi|197282961|gb|ABQU01000089.1| GENE 5 5397 - 5798 570 133 aa, chain - ## HITS:1 COG:aq_1207 KEGG:ns NR:ns ## COG: aq_1207 COG0735 # Protein_GI_number: 15606445 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Aquifex aeolicus # 2 133 11 139 144 91 39.0 3e-19 MFEEVLKQNNLKITPQRVAILKEIKKSGHISIEEIYENIKEIHPSISLATIYKNLTSMQE AHIVDEVKLPNQKQRYELVKQPHIHLICEKCGSIMDIHFDNSIERLKKECEEQTHYKVKD TSIALLGVCPKCQ >gi|197282961|gb|ABQU01000089.1| GENE 6 6159 - 7499 1557 446 aa, chain + ## HITS:1 COG:HP1152 KEGG:ns NR:ns ## COG: HP1152 COG0541 # Protein_GI_number: 15645766 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Helicobacter pylori 26695 # 1 440 1 440 448 558 67.0 1e-159 MFGAITESFQSAINKIRFQDDEKALKRALDELKKTLLKSDVHYKVLKSLLEEIEQKTKLA GIGKENFLNALKESLTHILTAPGNYGFIFAPKPPTIVLMAGLQGSGKTTTTAKLANYLKN KQKKVLLAACDLQRLAAVEQLRQLSLQVEVDFFYEENKSPIEIAIAAKEKAISGLYDVLI VDSAGRLAIDEDLMQELQGIKDSIQPNEIFYVVDSLSGQDGVKSAAIFHEKMDLSGVILS KFDGDSKGGIALSIAHQLGIPLRFIGVGEKIPDLEVFIPQRIVGRLMGAGDIHSLAEKTA AIISEKEAKDISKKIKKGKFTFNDFLAQMDNIKKIGSMQSIISMLPGLGNMAGALKDVDL DNSKEIKQIRAMVNSMTPKERENPDLLNGSRKKRIALGAGVDVSDVNRFLKQFENAAKMA KRFSSKGGMSDLMALMKDARMGGLKR >gi|197282961|gb|ABQU01000089.1| GENE 7 7594 - 7827 395 77 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239524562|gb|EEQ64428.1| 30S ribosomal protein S16 [Helicobacter pullorum MIT 98-5489] # 1 77 1 77 77 156 98 7e-38 MLMATVIRLTKMGRKKKPFYRIVVTDSRKKRDGGWIESIGYYNPLTEPSTVKFDAERLKY WTSVGAKMSERVQAITK >gi|197282961|gb|ABQU01000089.1| GENE 8 7827 - 8066 327 79 aa, chain + ## HITS:1 COG:Cj0711 KEGG:ns NR:ns ## COG: Cj0711 COG1837 # Protein_GI_number: 15792060 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein (contains KH domain) # Organism: Campylobacter jejuni # 1 77 1 77 80 75 54.0 3e-14 MVEKFVELYVKKIVNEPEKIQIHKKELDTNFYEIEIISSAQDAGRLIGKDGKMISAIKTI ISGLKAKDGNSYRVIVKPE >gi|197282961|gb|ABQU01000089.1| GENE 9 8066 - 8617 451 183 aa, chain + ## HITS:1 COG:jhp1076 KEGG:ns NR:ns ## COG: jhp1076 COG0806 # Protein_GI_number: 15612141 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Helicobacter pylori J99 # 14 183 4 181 181 112 38.0 5e-25 MLQKHKIQKDWVSVAKIGRPVGVKGEVLLHLLTDFPEVLKVGDTYFSQIGDLTIQSYNKE NSRIKFTQINSREIAKQFTNLILYTTQDFTKEHCKLKKDEFFWFEIIGSKILELGEILGE VCEIERFGQKDFLSIKTSHDLQAKGFPKSFLVPYEKRYIKEVDIHTTPKIIHTNFCKEIL ENS >gi|197282961|gb|ABQU01000089.1| GENE 10 8617 - 9321 441 234 aa, chain + ## HITS:1 COG:Cj0713 KEGG:ns NR:ns ## COG: Cj0713 COG0336 # Protein_GI_number: 15792062 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Campylobacter jejuni # 1 229 1 233 234 270 57.0 2e-72 MHFSFVSLFPHLLESYFSDSILCRAIKNQKISVGYINPRDFSKNRFLKVDDYQVGGGAGL VLEPFALSDTLESIKNQDSKAHIIFLTPCGKNFNHKDSRRLAKKEHIVFVCGRYEGFDER LIELYANEVFSIGDFILTGGELAALCLCDSIARQINGVLGNSESLKGESYEDFLLEAPNF VKPHIFKNLSIPSEYSKGNHAKICDLKLKASEAKTRFHRLDLYWQYKQRLKNEK >gi|197282961|gb|ABQU01000089.1| GENE 11 9311 - 9667 594 118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239524566|gb|EEQ64432.1| 50S ribosomal protein L19 [Helicobacter pullorum MIT 98-5489] # 1 118 1 118 118 233 100 6e-61 MRNKYIQHFEDAQMAGKEIPQFKAGDTLRVGIRISEGDKTRIQNFEGICISLRGVGTGKT FTIRKIGANGVGVERIFPIYSESIDSIKVLKIGRVRRAKLYYLRTRSGKSARIKEIRK >gi|197282961|gb|ABQU01000089.1| GENE 12 9672 - 11411 1575 579 aa, chain - ## HITS:1 COG:MTH551 KEGG:ns NR:ns ## COG: MTH551 COG0210 # Protein_GI_number: 15678579 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Methanothermobacter thermautotrophicus # 15 571 19 543 853 191 30.0 4e-48 MEIEQLAYSKVTEGEQFLTKLLHEKLSGDYEIYIQPKLNGNRPDIIVLHRKKGLFIIEIK DWKLERFHKDEKEQFFKYIYKNNKQKTIQVSSPTVQINRYRNFFRNYSIDPKNILCFMYF HNATAKEAQDFIGQQNVEFFGYDNVEAIIHRIQKSQNIIQYEIIHQLLNLLHTVEMGVKI HTTSQQNALIEHKPGSWRRVKGAAGCGKTLVIAQKAGILASIKKSVLVVCYNITLTTYIE EKIREVKRKFDLNYIDIFHFHGFVKHVNDINGRRIERKSSFGEWEVEAFKNFKDILEDEK CDNDVEIPKYDAILIDEGQDFQQEWFEMLLCLLKPDGELLLVADDKQNIYERKLSWVDKG MKGKGYKFRGAWGLLSENKRVKSVGYERLKYEISRFANIFLKDYLKNNPDKSFGYIQEEP IKQGMQKSIPMDILKWIDLKIYHNIEQIIFDAYCAICKDFNNKDIAIVTTNKREVEAIVE YFVEKGIKVEYLGKEENNKNSKKGFSNESQNIKIVNLHNYKGLEAKAIIFLTSNKPNTPK IAIETYIGITRAKECIVVLNRVKEYEEYGESWKRHESRN >gi|197282961|gb|ABQU01000089.1| GENE 13 11643 - 13742 2076 699 aa, chain + ## HITS:1 COG:Cj1359 KEGG:ns NR:ns ## COG: Cj1359 COG0855 # Protein_GI_number: 15792682 # Func_class: P Inorganic ion transport and metabolism # Function: Polyphosphate kinase # Organism: Campylobacter jejuni # 8 699 5 694 694 770 56.0 0 MTNPLNQPSNFINRELSWLRFNTRVLSEAQNKENPLLERLKFIAIYGTNLDEFYMVRVAG LKRLYAARITESGADRLTPKEQLDEIRTYLKNEKKLLESCYFEIINELKKLGLCIKNYEE VEESQKKELQTYFMNHLYPIVVPIAVDATHPFPHLNNLSYVLALKLQSLDNPNEIKFGMT RISRMLPGFIKLGDIYVLTDSIVAEFTSELFPGFRVLSWTAFRVTRNADIEIEEEEGDDF LALMTEGLKSRRKGEIIRLEIGKTSDNELKKFITNYIRVSPEDIYECEVPMNSSILWEIV GNKNFAQLTFPNYTPKILPPLDSNVNIFSILDTQDILSFQPYESFDPIVSFIQNAAKNPD VFSIRMTLYRVGKNSPIVKALIEAAENGKQVTALVELKARFDEENNLHWAKALESAGAHV IYGVPGLKVHAKIALVIKKEDKELREYVHLSTGNYNPSTAKIYTDISYMTSKKEFTQDAI KFFHNLSGFSHKSKLNTLLAAPLQIKPKILELIANEAKMGSEGRIILKANSIVDTDVILA LYEASNAGVKIDLIVRGICCLKPGIKGVSENIRVVSIVGKYLEHARIYYFKNATPQIYFA SADLMPRNLERRVELMTPVFEKNLADKLFGIIRLQSEDNSQAHELQSNGEYKKLSPIDGK KINSQKILEDYTNATYTSLKREEEEVKAKKLARRMFRES >gi|197282961|gb|ABQU01000089.1| GENE 14 13742 - 15001 1049 419 aa, chain + ## HITS:1 COG:HI1239 KEGG:ns NR:ns ## COG: HI1239 COG0014 # Protein_GI_number: 16273158 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyl phosphate reductase # Organism: Haemophilus influenzae # 8 419 7 417 417 350 44.0 4e-96 MKLYETLKKAKEAKNILSQLPHTIRQNFLRDCARNLENKTLKILEANQKDLKNAKQYNLN SAMLERLMLNEKRIVDMANSLREIADFPDPLNRILSGFCNASGLEIQKVSVPLGLIAIIY ESRPNVTSDTAGLCFKSGNVCILKGGKEAQNSNEAIVEIFSQVLQTYSLPQEAIVLLPSM KNREELKELLEAKEYVDLLIPRGGEGLISFVSQYAKVPIIKHDKGVCHIFAHHSCKIEQS IEVIINAKTSRPSTCNACETLLIDSSFAEEFLPKVAQALKQKDTILKGCKKACEILSQNN IECQLIPLESYHIEYNENILNLRIVQDLQEAIQHIQTFGSGHSEAILCEDYSIAEEFLNK IDSACVYVNASTRFSDGGEFGYGAEVGISTSKLHARGPMGVDSLTSYKYKIRGNGQIRK >gi|197282961|gb|ABQU01000089.1| GENE 15 15007 - 15189 183 60 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308906|ref|ZP_04808061.1| ## NR: gi|242308906|ref|ZP_04808061.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 60 1 60 60 94 100.0 3e-18 MFLEENRALAIQRAIKELCDDEVLLVLGKGDEKYQIIGDEMLHFDDVEEIQKSLQLYFKQ Prediction of potential genes in microbial genomes Time: Tue May 24 03:00:06 2011 Seq name: gi|197282960|gb|ABQU01000090.1| Helicobacter pullorum MIT 98-5489 cont2.90, whole genome shotgun sequence Length of sequence - 2432 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 2, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 393 349 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 2 1 Op 2 . - CDS 393 - 1007 511 ## WS1689 hypothetical protein 3 1 Op 3 . - CDS 1009 - 1254 394 ## COG0694 Thioredoxin-like proteins and domains - Prom 1351 - 1410 7.9 + Prom 1243 - 1302 7.2 4 2 Op 1 8/0.000 + CDS 1461 - 2189 575 ## COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit 5 2 Op 2 . + CDS 2198 - 2432 276 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Predicted protein(s) >gi|197282960|gb|ABQU01000090.1| GENE 1 3 - 393 349 130 aa, chain - ## HITS:1 COG:HP1494 KEGG:ns NR:ns ## COG: HP1494 COG0769 # Protein_GI_number: 15646103 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Helicobacter pylori 26695 # 11 126 14 131 447 109 47.0 1e-24 MKIALKDASDFKFLSDDSRENPKDCAFLVTQSSQKYFQQAKDNGFEVFITPQDLKKYLDL NLKLIGITGTNGKTTTAAMIYSILLDMGYKVGLLGTRGFFVNGIQKRQKGLTTPSLLEVY TAINEARQED >gi|197282960|gb|ABQU01000090.1| GENE 2 393 - 1007 511 204 aa, chain - ## HITS:1 COG:no KEGG:WS1689 NR:ns ## KEGG: WS1689 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 59 200 51 195 196 120 46.0 2e-26 MDLTKQFLKFLKKANDFFQKGQYLECLEACSLANGILQGIQEDSSIPIKKLSFLQMLTLL ADMALEHQEEARALYEYYQVIKKTKNAPKEIIKMIENCDRDVLMLNLAIQRIQEADIDKN DGILYKDFQKVVNNVGFKEAFEDLMFSTKIIFTNKGDFLFFMQNLVDYGFKDIAINYFEN IGNILFLDRDFLKIYKRILKSGEC >gi|197282960|gb|ABQU01000090.1| GENE 3 1009 - 1254 394 81 aa, chain - ## HITS:1 COG:Cj1639 KEGG:ns NR:ns ## COG: Cj1639 COG0694 # Protein_GI_number: 15792944 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin-like proteins and domains # Organism: Campylobacter jejuni # 1 80 1 80 90 92 57.0 1e-19 MFVFSDQELLKPVEMVIEKVRPMLINDGGNVTLLKIENGKVYVRLEGACKGCPSSSQTLK FGIERALKNEIHPDIELINVG >gi|197282960|gb|ABQU01000090.1| GENE 4 1461 - 2189 575 242 aa, chain + ## HITS:1 COG:Cj0408 KEGG:ns NR:ns ## COG: Cj0408 COG2009 # Protein_GI_number: 15791775 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, cytochrome b subunit # Organism: Campylobacter jejuni # 7 231 4 229 260 167 42.0 2e-41 MQNDEVVIQSYLKITSERKKRKNPARWDMWQSITGLVLAIFILFHMCFTSSILFGVDAFN AVVAFSEGSLIFGKGIPLLTTFVVIIISAFFVAHAFLAMRKFPANFQQLMIFKTHKSLMK HCDTTLWWIQFLTGFALFFLGSAHLVTILFNSTDINALTSAARFVEGNLAEFYLVLLVVM VLHASIGLYRVIIKWIPLEASTTAKSNIKRRNVKIAVFSVFIILGVIAFIADFTWIALGK SL >gi|197282960|gb|ABQU01000090.1| GENE 5 2198 - 2432 276 78 aa, chain + ## HITS:1 COG:jhp0178 KEGG:ns NR:ns ## COG: jhp0178 COG1053 # Protein_GI_number: 15611248 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Helicobacter pylori J99 # 1 78 1 78 714 138 80.0 2e-33 MKIVYCDSLVIGGGLAGLRAAVACQEKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKM SDGDNEDLHFADTVKGSD Prediction of potential genes in microbial genomes Time: Tue May 24 03:00:16 2011 Seq name: gi|197282959|gb|ABQU01000091.1| Helicobacter pullorum MIT 98-5489 cont2.91, whole genome shotgun sequence Length of sequence - 19985 bp Number of predicted genes - 21, with homology - 19 Number of transcription units - 12, operones - 6 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 36/0.000 + CDS 3 - 1739 2148 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 2 1 Op 2 . + CDS 1736 - 2482 879 ## COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit + Term 2486 - 2521 1.4 + TRNA 2546 - 2633 67.3 # Ser GGA 0 0 + Prom 2558 - 2617 80.4 3 2 Tu 1 . + CDS 2691 - 2777 67 ## - Term 2526 - 2593 10.8 4 3 Tu 1 . - CDS 2790 - 3401 412 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - Prom 3535 - 3594 7.0 + Prom 3408 - 3467 7.5 5 4 Tu 1 . + CDS 3575 - 4069 376 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) + Prom 4106 - 4165 10.1 6 5 Op 1 . + CDS 4366 - 4797 460 ## COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain 7 5 Op 2 . + CDS 4816 - 4926 132 ## + Prom 4930 - 4989 1.8 8 6 Tu 1 . + CDS 5074 - 5820 576 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Term 6174 - 6201 -0.4 9 7 Op 1 35/0.000 - CDS 6226 - 7386 1469 ## COG0206 Cell division GTPase 10 7 Op 2 3/0.000 - CDS 7408 - 8841 1467 ## COG0849 Actin-like ATPase involved in cell division 11 7 Op 3 . - CDS 8850 - 10283 1416 ## COG0760 Parvulin-like peptidyl-prolyl isomerase - Prom 10308 - 10367 7.6 12 8 Tu 1 . - CDS 10398 - 11519 479 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA - Prom 11564 - 11623 4.7 + Prom 11623 - 11682 2.8 13 9 Tu 1 . + CDS 11703 - 12293 741 ## gi|242308921|ref|ZP_04808076.1| predicted protein + Term 12468 - 12534 30.0 + TRNA 12365 - 12442 80.6 # Met CAT 0 0 + TRNA 12446 - 12522 91.6 # Arg TCT 0 0 + Prom 12367 - 12426 80.4 14 10 Op 1 . + CDS 12663 - 13508 794 ## COG0414 Panthothenate synthetase + Prom 13538 - 13597 2.0 15 10 Op 2 . + CDS 13631 - 14818 815 ## HH1512 hypothetical protein 16 10 Op 3 2/0.000 + CDS 14846 - 15979 1260 ## COG1960 Acyl-CoA dehydrogenases 17 10 Op 4 . + CDS 15983 - 16852 1005 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component + Term 16875 - 16919 10.2 + Prom 16872 - 16931 6.0 18 11 Op 1 . + CDS 16958 - 18004 906 ## gi|242308926|ref|ZP_04808081.1| glycosyl transferase family protein 19 11 Op 2 . + CDS 18016 - 18375 252 ## gi|242308927|ref|ZP_04808082.1| predicted protein + Prom 18416 - 18475 11.4 20 12 Op 1 38/0.000 + CDS 18595 - 19398 1362 ## PROTEIN SUPPORTED gi|239524593|gb|EEQ64459.1| 30S ribosomal protein S2 21 12 Op 2 . + CDS 19409 - 19984 331 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts Predicted protein(s) >gi|197282959|gb|ABQU01000091.1| GENE 1 3 - 1739 2148 578 aa, chain + ## HITS:1 COG:Cj0409 KEGG:ns NR:ns ## COG: Cj0409 COG1053 # Protein_GI_number: 15791776 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Campylobacter jejuni # 1 575 80 659 663 865 72.0 0 GCDQKVARMFVTTAPKAIRQLAAWGVPWTRIKKGDRTAVINAQKTTITEEDFRHGLIHSR DFGGTKKWRTCYTADATGHTMLFAVANEALKHNVEIHDRKEAIAIIHKDGRCYGSIVRDL ITGELIAYVAKGTLIATGGYGRIYKDTTNAVICEGTGTAIALETGVAKLGNMEAVQFHPT ALFPSGILLTEGCRGDGGILRDVDGYRFMPDYEPEKKELASRDVVSRRMIQRIREGKGVK SPYGEHLWLDISILGRQHIETNLRDVQEICECFAGIDPAEKWAPVKPMQHYSMGGIRTNH KGESALKGLFSAGEAACWDLHGFNRLGGNSVSEAVVSGMIIGDYFAESCQQTYADIETKL VEEFLQKEQKYLEDILAKENGENVFEIKNKMKEIMGDKVGIFRDGKHLQEAVDELEKLYI RSKNISIKTKRMHANPELEEAYRVPKMLKIALCVAKGALDRTESRGAHSREDFPKRDDLN WLKRTLTSWEDPNQTLPTITYEPLDISTMEIAPGFRGYGAKGMIIENPESLKRQEEIDNI RTKMEAEGKDRYEIQEALMPFELQSYYKARNQRIGDKQ >gi|197282959|gb|ABQU01000091.1| GENE 2 1736 - 2482 879 248 aa, chain + ## HITS:1 COG:jhp0177 KEGG:ns NR:ns ## COG: jhp0177 COG0479 # Protein_GI_number: 15611247 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit # Organism: Helicobacter pylori J99 # 5 244 1 238 245 375 70.0 1e-104 MSGAVENSNRTLTIRVLKFDPNSAISKPHFVEYKLQEAHSMTIFIVLNMIKEQFDPDLSF DFVCRAGICGSCGMMINGRPRLACRTLTKDFPDGVITLMPLPAFKLIKDLSVDTGNWFNG MSKRVESWIHAQEKSEEHMSQLEERVEPEVAQEVFELDRCIECGCCIASCGTKLMREDFV GAAGLNRVVRFMLDPHDERTDADYYELVGDDNGVFGCMSLLACHDVCPKNLPLQSKIAYL RRKMATAK >gi|197282959|gb|ABQU01000091.1| GENE 3 2691 - 2777 67 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFNLSYLFLVISIDLPLCYIKSIYDSIK >gi|197282959|gb|ABQU01000091.1| GENE 4 2790 - 3401 412 203 aa, chain - ## HITS:1 COG:FN0217 KEGG:ns NR:ns ## COG: FN0217 COG0664 # Protein_GI_number: 19703562 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Fusobacterium nucleatum # 25 203 38 211 217 76 31.0 3e-14 MEQWGVSKEDIEFYSQSIYTKNFAKGQKIFSTQDECRGLVLIEYGTLRAYIISSCLKEIN LFVLHGGDYCILSASCMLKNISFEVNLEFVETSNVFILPSKIFNQLSTKYPKAKQFHLDL VSQRLSKVVDSLTSLAFEPLADRILKFLQEIALANQGNKKILYITHEEIANALGSAREAV SRVLKDLAKQNKVALKRGMIELL >gi|197282959|gb|ABQU01000091.1| GENE 5 3575 - 4069 376 164 aa, chain + ## HITS:1 COG:BS_ywrO KEGG:ns NR:ns ## COG: BS_ywrO COG2249 # Protein_GI_number: 16080652 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Bacillus subtilis # 1 151 1 154 175 106 37.0 2e-23 MKTLILFAHTFWENSKVNKALLESLKDSNHIKIHNLTTTYPDGKIDAEAEKALLKEADTI IFQFPLFWFSTPSLLKEWQDRVMTGILYGNEPKLLNGKKFGIITTLGGAESSYDGHHGAT IKEILLPIYHSFKYLGLQEKEPFCIFSANAANLPLQEYKKYLNS >gi|197282959|gb|ABQU01000091.1| GENE 6 4366 - 4797 460 143 aa, chain + ## HITS:1 COG:BMEII0800 KEGG:ns NR:ns ## COG: BMEII0800 COG1917 # Protein_GI_number: 17989145 # Func_class: S Function unknown # Function: Uncharacterized conserved protein, contains double-stranded beta-helix domain # Organism: Brucella melitensis # 8 135 31 158 159 97 40.0 9e-21 MAADTQTITRNGELGSFKGDSKIFSGEVKVSMLFKSTSWREFGGGLVEFSKNARSAWHTH PAGQTLIVTDGEILTKIPGQAATIAKKGDVISCPPNIRHFHGATNTSHGSHIALTQEKNG QNVNWEELVSDEEYAKALKEARK >gi|197282959|gb|ABQU01000091.1| GENE 7 4816 - 4926 132 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNTIQNMQRREVLKTSAKALGGALALNMLGGGGSIC >gi|197282959|gb|ABQU01000091.1| GENE 8 5074 - 5820 576 248 aa, chain + ## HITS:1 COG:TM1009 KEGG:ns NR:ns ## COG: TM1009 COG0656 # Protein_GI_number: 15643767 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Thermotoga maritima # 1 240 44 286 286 251 52.0 1e-66 MDTAQSYLNEEGVGYAIKATGIKREEIFITAKLFSQNYKKVGDTKKSYEESLKKLHIDYE DLFLIHQPIGDVYGAYREMIELYNAKKVRAIGVSNFYPARFMDFYLNFDIKPAVNQIECH PYFQQQNALKLAKSLNVQLEAHSPLYQVRENILQNPILSQIAKKHNKSVAQIILRWQTQR GIPVIPKTIRKERMRENLNIFDFSLDSDDMAKIATLEQNTSYFFMPNNAQHTEWIIKGKK IINGRAVD >gi|197282959|gb|ABQU01000091.1| GENE 9 6226 - 7386 1469 386 aa, chain - ## HITS:1 COG:Cj0696 KEGG:ns NR:ns ## COG: Cj0696 COG0206 # Protein_GI_number: 15792045 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Campylobacter jejuni # 2 386 4 370 370 324 53.0 2e-88 MFDIQEVKQNFGANIKVIGVGGGGSNMIGHLISTGTYEGIELAVANTDAQAISTSLAPVR IQLGEKLTKGLGAGMKPQVGEDAALESYEDLKKFLEGTDIVFISAGLGGGTGTGAAPVVA KAAKEVGALTVCIVTKPFRWEGRKRTELAEEGYRKLKAESDSIVVIPNDKLLSIIDKNLG LKDSFRIVDDVLVRAVNGMSGVILSHSAGDINVDFADVQTVMSYKGLALMGIGEAAGTDA AKEAIKIAIESPLFDNMSISGAKGVLVHFYLNPDYPMAEISNAMDVVYDSTDSDAEVIFG TTTDATLERDKVRITIVATGFEKEISQTHSTESNDNSTLKLVNPKDMSQRINQQNTLLSA KKKISGDDFTNEEYLDVPAFLRRQMD >gi|197282959|gb|ABQU01000091.1| GENE 10 7408 - 8841 1467 477 aa, chain - ## HITS:1 COG:Cj0695 KEGG:ns NR:ns ## COG: Cj0695 COG0849 # Protein_GI_number: 15792044 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Campylobacter jejuni # 14 477 5 462 462 387 46.0 1e-107 METSYKGKELEQTILGIDIGSTKICAVIANCKDGIPHIIGTGFHKSQGLKKGTITNIEQA SRAIKEAVNDARRVAGTNNNKAIISISGAYTKSTDNSGVVNIPNNEIGIKEINRAIQTAL YNATIPNEYEVIHILPYNFKLDDQDFIDDPMGMTGSRLEVSVRIITAQKSSLGNLKKAIK SAGIEIQNIVLASYASSIAVLSEDEKNLGVACIDMGGSTCELMIHVGNSLRYNDFLGVGS NHITNDLAMALHTPQSIAEQVKIQYGGLLKTKEDSENLIEIPSIGGDDNSKHQVSLSVVH NVVYARVEETLMILEKSLEKSNLKEQLGSGVVLTGGMVQLEGLRELASALFSAPVRIAKP VEIDGLFTDLKGPECSTAIGLILYASGKYTNYEIDSEKRIRYRNEKLEDDTAQFHRNIHL MNPLQDKTATNINPVNSIPKSAADIKQDLSGITEIKKITPRSNNVFVQIWQKLTQMF >gi|197282959|gb|ABQU01000091.1| GENE 11 8850 - 10283 1416 477 aa, chain - ## HITS:1 COG:jhp0911 KEGG:ns NR:ns ## COG: jhp0911 COG0760 # Protein_GI_number: 15611978 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Helicobacter pylori J99 # 1 477 13 486 487 254 33.0 2e-67 MVIIWISTIAFIGAGFVGWGSYSFSSTSNAVAVVGDIKVSIDKMQREYARLYNIYNQLVG GTLDDEQAKKMGIEEQAINNLIVKALMLNYAYDLGLRVSKEEIIQEITSIEGFQNKGKFD EQIYKQTLKDNQLKPKDFEEGIEEGLLLQKLDALLNIPLTPLEIEALGAAYSMEDLVHIE VINKKDIVFTPKEEEIKKYWENNKDIYQTQRGYEISSIFIPLDSIAVEENALEQYYKDFK NQFLDSNGQIIPFAQAKDKVIEKFRDSQAQKEALKEYISLRKGENQEAKDSTIYEGSDEY GADFINLLSQAKEQETLKPIRVNNKGKEGYITAKVVKIIPSQPQTYEVAKANAKEDYVNA EQIRLLEEKATKQLGTFKGVNVGYIGYGSEVELAGLTKEEASDFIRILTTKKEEKGYILL ENKAILYQIFDQRVKNSAIIKENLDFLTQNGTQIKSRLVEIEFLNYLSKTYKIVRKI >gi|197282959|gb|ABQU01000091.1| GENE 12 10398 - 11519 479 373 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 3 341 9 342 537 189 34 2e-47 MEKILDIIEGISYEKGLPIESVAEVVKESVIKVAKQTLDPNISYDAEIDKKNKTLHLYQV ISVCADDDNNAKEDKEHFIPLCEARKHDSEIKVGDELRYELSLENMNRSAVNALFRELEF KIQRLIETQLFDKYKAQVGKIVSGSVVRIDDLGNTFVEIDEVRAILPKKNRIKGEEFRIG QVVGAILKYVGIDKQNGISIELSRTTPKMLEELLRLEVPEIKDGEVEIVSCARIPGERAK VALKTDSAKIDPVGATVGVKGVRINAVSKELKNESIDCIEYSSQPEIYIARALSPALIVS VVVEDKRAIVTISNEQKPKAIGKNGINVRLASMLTGYEIELKEIGAGNLQNSEHIHQENE KNDLDILSSLFKG >gi|197282959|gb|ABQU01000091.1| GENE 13 11703 - 12293 741 196 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308921|ref|ZP_04808076.1| ## NR: gi|242308921|ref|ZP_04808076.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 196 1 196 196 307 100.0 3e-82 MLVNQNMGNLSGIFNEANRLLSDSNNINSIAKSQKIQPTQQENEEENYQKERITYGMISL ELMSDEQYMAFERVTAGMSPNEKISVAQTLTRAGNLSASVERVEQKEKSLQEESNSSKDS EKWFLGITPKGWGEVAQEFQENLNNLDGIYTKNYNKNLTSNYNDIMRKSQEAKTQRILRE FSHAIHLGNTQIDTLT >gi|197282959|gb|ABQU01000091.1| GENE 14 12663 - 13508 794 281 aa, chain + ## HITS:1 COG:jhp0006 KEGG:ns NR:ns ## COG: jhp0006 COG0414 # Protein_GI_number: 15611077 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate synthetase # Organism: Helicobacter pylori J99 # 1 281 1 276 276 263 48.0 2e-70 MQVFTTTQELQNFISTYKKENPTKTIGLVPTMGALHNGHLSLIQASQESCDCTIVSIFVN PTQFGPNEDFDKYPRKKEADLSVCQKAMVDIVFMPKIQEIYPFSCEFQITFNAPMAMANI LEGKTRPGHFNGVLQVVHKLFNLTQANKAFFGKKDAQQLLIIQQMVEDLFLPIEIIPCPI VRTQEGLALSSRNAYLTKEGKKEALKISQSLNTATKMIMQGEIESAKIKQAALETLKGLE VEYFVIVDKHLQEIPKIQKNSTLILVVAKVEGVRLLDNLWL >gi|197282959|gb|ABQU01000091.1| GENE 15 13631 - 14818 815 395 aa, chain + ## HITS:1 COG:no KEGG:HH1512 NR:ns ## KEGG: HH1512 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 4 395 16 410 410 557 70.0 1e-157 MQEKSCVFMGAIPTGALFFMRLENAFLLSNKGDIIEIISQYDNLENDLIAWCRFKGENFQ KKFSLKNNNSTYFAYVMQKQSPTKFTKFNPNSTLSPIHQGLAPNGSSIELASPKYHFPLN NKNEIWGNNLEQIYEESKKMQWNATTDILWSEIPSLDSTLEFATAQIMTYLTENEFSALY IPSRFLAQISPFFTPIPLVLSSIIGDEGRHIESFIKRANATGLGVQYSTLTTQQSLYSLW NEKDYFKSSFLLHVMGEGTFIDLLKFLEKCFENLGDLQTAKLLNLARRDETRHVAYGMNH IKSTISQNPSKIAILKDAVFKRKNYLESQSDESSLLLESMAILAGGSETKISSGFESVLE LKKKMEKNRTKRLMECGIDEDLARDLSRSHTPNFM >gi|197282959|gb|ABQU01000091.1| GENE 16 14846 - 15979 1260 377 aa, chain + ## HITS:1 COG:MT1719 KEGG:ns NR:ns ## COG: MT1719 COG1960 # Protein_GI_number: 15841136 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Mycobacterium tuberculosis CDC1551 # 20 374 15 368 373 168 33.0 1e-41 MLDLNNLENLTQKLGKEFIAPYAQEIDQKARFPKEAYEALKQQGFMGLLIPKEYGGSQGG NLAHIQTCYSLASFNASVALCYMMHNVATACIVKYASKWQKDLYLPKIAKGEISFALAYS ESGSGTHFVNPDITESKKGNQIILNGRKSFVTSAQEADFYLTYTNSCELAGKKNNWIVPS THPALIHEEGVWDGFGMRGNVSKPVQYNQVELNPQDSLLGNEGEGEEQINLVAMYFVAGL GAVYSGVGKAAYECALEHCKSRKYSNGSDLADNELVRVHLAELYTKTQSQIALVKDAANS FDMGLSDAPAKIFACRINATHLVMEICELAMRLGGGKAYSKHLPLEQYLRDALASQVMAP SLDILKIWLGNAITNKG >gi|197282959|gb|ABQU01000091.1| GENE 17 15983 - 16852 1005 289 aa, chain + ## HITS:1 COG:MT1720 KEGG:ns NR:ns ## COG: MT1720 COG3221 # Protein_GI_number: 15841137 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Mycobacterium tuberculosis CDC1551 # 4 286 6 270 274 221 40.0 9e-58 MKNILVGAVAYAPQIVPIWDTIRDYANDYFKGKLRLDYVLFSNYERQVEWLLNGKIDIAW NTNVAYVRSKFAANNQVEALLMRDTDIGFKSIFVGRKENITNLESLRGKRFGLGSLDSAQ AAIMPLFYLQKEGFNTQEFLAKDLQTSQNIGDSIAIIRYNSDVGKHGDTGRSEFDVLDSI KAGTLDAGAIGSTTWARILQEDSYPEISSFYASPDYCHCNFTALKNLNADSKNLFIEMML SQNTLKNDPAIAQMMKLEGLNQWVICDEKTLKGYDEIFEAMQKQNLLNP >gi|197282959|gb|ABQU01000091.1| GENE 18 16958 - 18004 906 348 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308926|ref|ZP_04808081.1| ## NR: gi|242308926|ref|ZP_04808081.1| glycosyl transferase family protein [Helicobacter pullorum MIT 98-5489] # 1 348 1 348 348 702 100.0 0 MSNKKPKVAILLAGNDAVDFAIANVIIGLKRYNEDLITNIFIYHDIKKETREKISSLWED KIIWIPYAYEDFLKDIKEDIAKILIPQGSRWGHFIYALFHIFTHLKDYDYALYLDTDILI LDSIEDLLAKDIDARGVNVGDSFEVARALEILNHPITQEDLPKPQKPFMGVVDNPISLQN PFKPNAAFLSFNCRILEKFGKDNPTQKCFEYLKLIAQNHLLPTQSGSNEAPFGILAHIYK IKFDFIETSHKVAILPRQLQETHKILHAYSDSKFWNTSLTFVAFQEWFVNHKIWEKINGK KPLTFKPDNLGGLTSPHKLYHFLWNLNALLPLYHEIYKRFLQGGGGNI >gi|197282959|gb|ABQU01000091.1| GENE 19 18016 - 18375 252 119 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308927|ref|ZP_04808082.1| ## NR: gi|242308927|ref|ZP_04808082.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 119 3 121 121 209 99.0 6e-53 MLDSQDRFLKIHSSFFMDNVFYQIAANEGLGTSHICYELQIMCKNNNLLESMKNIATSNN FTLLCHQTTSGEIIDSYITFDISTLSTEQKIQALERLISLTFNTFYKAIYHQDFIPFST >gi|197282959|gb|ABQU01000091.1| GENE 20 18595 - 19398 1362 267 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239524593|gb|EEQ64459.1| 30S ribosomal protein S2 [Helicobacter pullorum MIT 98-5489] # 1 267 1 267 267 529 100 1e-150 MVTMKDLLECGVHFGHQTRRWNPKMKKFIFGVRKNIHIIDLQKTLRYFRYTYNIVRDAAA EGKTIMFVGTKKQASETLKQYAESVNAPYVNYRWLGGMLTNFSTIRKSIRKLEIIEEMES SGQIDLLTKKEKLMIQRKKEKLTQYLGGVRQLKKAPDMIFVIDAAKEKIAVAEARRLGIP VVAPLDTNCDPDMVDYPIPGNDDAIRSIQLFCKEIAEAITEGRAIAGGEIPENQEEVAPA SEEEKQEVIEEAMSEEDFTQEIQKEAE >gi|197282959|gb|ABQU01000091.1| GENE 21 19409 - 19984 331 192 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 169 1 157 283 132 44 2e-30 MADISAQLVKQLREMTDAGMMDCKKALVETNGDLEKAVEYLREKGLSKAAKKADRIAAEG SISIQVSDDFKKASMVEINSETDFVAKNEGFKELSAKTIAIVQDSNISNAEELHTLNLDG AKFEEYLKTQIAKIGENIVVRRIAKVQAQGSGIVNAYVHSNGRVGVIIALKCQKEENAAK LVDLTKNLCMHA Prediction of potential genes in microbial genomes Time: Tue May 24 03:00:57 2011 Seq name: gi|197282958|gb|ABQU01000092.1| Helicobacter pullorum MIT 98-5489 cont2.92, whole genome shotgun sequence Length of sequence - 5331 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 26 - 1390 1084 ## COG1322 Uncharacterized protein conserved in bacteria 2 1 Op 2 . - CDS 1398 - 3236 1322 ## COG0457 FOG: TPR repeat - Prom 3257 - 3316 10.4 + Prom 3235 - 3294 9.7 3 2 Tu 1 . + CDS 3374 - 4606 1133 ## COG0477 Permeases of the major facilitator superfamily 4 3 Tu 1 . - CDS 5062 - 5331 131 ## gi|242308933|ref|ZP_04808088.1| predicted protein Predicted protein(s) >gi|197282958|gb|ABQU01000092.1| GENE 1 26 - 1390 1084 454 aa, chain - ## HITS:1 COG:PA1031 KEGG:ns NR:ns ## COG: PA1031 COG1322 # Protein_GI_number: 15596228 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 39 445 5 434 453 139 24.0 9e-33 MSYLLVSISVFLFVIAVVAVWFAVQNIALRKERDSLVVQIDTAQSTKQSLEAKLIETSKC HQQTLRENAIMQSQLDLIQKDKEILTSQLTKITQDYHFILQEKAKIQSKLESTATLLESL EQKYSQNLVILKEEFEKSMQLQSQSMIQQNKLHLLEDSKKILDSVFNPVRESMKEYKDKL VANEIKLEANIKNMFAYSQAIGQNADKLAQILKGDKKIRGNFAEIQLKNVLEHSGLVAGE QYKLQEHFNFEGSGYRPDAVVYLDKHKSIIIDSKFPLPNNFSFESLNENVCQEIVRNLKN RIDELAKKPYANFEAHTYEFVLLFIPYQNILDLALSVDSGIYQYAYSKKVYLTTPQTLFM ALKTIEVSWVYIQSDEKVMKAFEEIGKFYDKFVGVAEDFERLKGLIERLGKQSDELDSKL LSGRGSLASRFESLKKLGAKTAKKLSIEESFLLE >gi|197282958|gb|ABQU01000092.1| GENE 2 1398 - 3236 1322 612 aa, chain - ## HITS:1 COG:Cj1679 KEGG:ns NR:ns ## COG: Cj1679 COG0457 # Protein_GI_number: 15792983 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Campylobacter jejuni # 1 608 1 582 584 323 35.0 7e-88 MIDYAKCCFANGAYRESLMICENILRQNAFDPQAIELASISSLKLKDARCYDYCRRAYEG RTNSFYLAFNLAMAAKEVGRFQESRSILENLVKLQNNPLQWQCLRELASVYRLEGMLDNA YQAYVLLLQQTPKDLDLWNEVSSLYMQANPQKALQTCIECHNKLLEIIKQLEENPNNGDS KENLASLDDIPEYKKPLQERLDKTTNAKLPEQINLEIQAIRNFLNTALDLKIAKLFFLTR QDQEAIKYYEMLQIPNSQNAEFWRNFAYTLECQGRYEDARQAYENAISINPHPTYKFDLA YLLMRLGDIKENWQAGVELYENRLFYAASETFAPNLYQQAFDAFKQDQKCFEGKKIFVYC EQGFGDTLMYCRLLERVCESAEEVLFLPQSAMYPFFRYCLKQLRADGDTIFAKLKVLNAL PKNFDYALPICSLPFFYQVDSLETINALKSPIVPLAKTAKKNAKKTIGFYWYSEFTHREK TSRNFPVELFLEAFEGLDYKIVSLQFGADGLPKKIENRGKNFQSWLDTYDALADIDYLVG IDSSPGHLGMLLGIPTIMVIDSRFDWRFGRYEKPTPLFYENMKDKVKFVIYKNHQETKEE LHNVLKELKASK >gi|197282958|gb|ABQU01000092.1| GENE 3 3374 - 4606 1133 410 aa, chain + ## HITS:1 COG:Cj0035c KEGG:ns NR:ns ## COG: Cj0035c COG0477 # Protein_GI_number: 15791434 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Campylobacter jejuni # 1 398 1 398 400 383 58.0 1e-106 MQKTTTFKGIQKLNLILILAFMSSLAPLSTDMYLPALGEVQASFATNSFYTQLSLASFFV AFALGQLIYGPLSDVYGRKKPLYIGIFIFILSSLGCISFDSIYAFIFFRFLEALGGCAGI VIARAIVNDNFELKEAASVFALMMVVSSLAPMLSPGIGSILLDYFSWKSIFAILFGLGII LLIYIFFGLQGIQENTTTQNFNCRAILDNYKKILKDRRFRIYIFASGFAMMTMFAYITGS SYVFREYYGLSEKSYGILFGINALSFMIFANINARLVRHYSPYFVLPYSFLTMLAIAILL IFVGFLDLGFLAFEILLFLMIGMLGFIIPNTTTLAMARFKQNSGSASALLGSIQFALAGG ISFAISALEANSPLPLALLISLCLLIACGIYFSLNAREIQRYKNKFKFFS >gi|197282958|gb|ABQU01000092.1| GENE 4 5062 - 5331 131 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308933|ref|ZP_04808088.1| ## NR: gi|242308933|ref|ZP_04808088.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 89 1 89 89 97 98.0 3e-19 EIQNSNQLDLNHLNELKDSRLDLIQLESKIQDTKNLNRLKESKNPNKIQMKSSKTTLSKI SISIIASILLSQSLVALPSGGKLLYLISG Prediction of potential genes in microbial genomes Time: Tue May 24 03:01:06 2011 Seq name: gi|197282957|gb|ABQU01000093.1| Helicobacter pullorum MIT 98-5489 cont2.93, whole genome shotgun sequence Length of sequence - 13652 bp Number of predicted genes - 18, with homology - 18 Number of transcription units - 3, operones - 3 average op.length - 6.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 595 648 ## COG1192 ATPases involved in chromosome partitioning - Prom 619 - 678 7.0 2 1 Op 2 . - CDS 687 - 1082 528 ## gi|242308844|ref|ZP_04807999.1| predicted protein 3 1 Op 3 . - CDS 1146 - 1613 242 ## COG4959 Type IV secretory pathway, protease TraF 4 1 Op 4 . - CDS 1618 - 2280 703 ## COG2184 Protein involved in cell division 5 1 Op 5 . - CDS 2280 - 2519 318 ## gi|242308847|ref|ZP_04808002.1| conserved hypothetical protein - Prom 2540 - 2599 8.6 6 2 Op 1 . - CDS 2622 - 3341 688 ## Bamb_6608 conjugal transfer protein TraL 7 2 Op 2 . - CDS 3352 - 5175 1447 ## COG3505 Type IV secretory pathway, VirD4 components 8 2 Op 3 . - CDS 5172 - 7382 2124 ## COG4227 Antirestriction protein 9 2 Op 4 . - CDS 7387 - 7527 294 ## gi|242308851|ref|ZP_04808006.1| predicted protein 10 2 Op 5 . - CDS 7514 - 7876 429 ## COG0629 Single-stranded DNA-binding protein 11 2 Op 6 . - CDS 7866 - 8420 527 ## PBPRB1621 conjugal transfer protein - Prom 8507 - 8566 7.3 12 3 Op 1 . - CDS 8591 - 9823 1207 ## COG2948 Type IV secretory pathway, VirB10 components 13 3 Op 2 . - CDS 9834 - 10271 385 ## gi|242308855|ref|ZP_04808010.1| predicted protein 14 3 Op 3 4/0.000 - CDS 10268 - 11197 752 ## COG3504 Type IV secretory pathway, VirB9 components 15 3 Op 4 3/0.000 - CDS 11210 - 11905 635 ## COG3701 Type IV secretory pathway, TrbF components 16 3 Op 5 . - CDS 11925 - 13184 1206 ## COG3846 Type IV secretory pathway, TrbL components 17 3 Op 6 . - CDS 13096 - 13365 347 ## gi|242308859|ref|ZP_04808014.1| conserved hypothetical protein 18 3 Op 7 . - CDS 13414 - 13650 180 ## gi|242308860|ref|ZP_04808015.1| predicted protein Predicted protein(s) >gi|197282957|gb|ABQU01000093.1| GENE 1 1 - 595 648 198 aa, chain - ## HITS:1 COG:HP1000 KEGG:ns NR:ns ## COG: HP1000 COG1192 # Protein_GI_number: 15645615 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Helicobacter pylori 26695 # 1 194 1 188 218 129 40.0 3e-30 MIISVVNEKGGSGKTTLAVNLSARLAEDGDNVLLIDADPQKSTEVFSDMRSQSNLEPLFS NVSKTGVSLGDEIKRMKNAFDSIIVDTGGRDSKEMRKAILSSNIIIIPTIPSQYDVNVLD HMLEIYNEVIEINPNLLALVLVNRVSPNPFLAKELENLKEYINEAKKEKGLDKVIMLESV IYERQAYRKAVIEGKSMK >gi|197282957|gb|ABQU01000093.1| GENE 2 687 - 1082 528 131 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308844|ref|ZP_04807999.1| ## NR: gi|242308844|ref|ZP_04807999.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 131 1 131 131 201 100.0 2e-50 MNKKELIEEIAKKHHIILDENDPILAVVSANEIIFDDFLEKIDLLFTKHKTDLESYKFNI FNEIREYSKSNQEILKDILTQAQTNQNTTKPPQEKTEDTKEKKNTNINFLIIAIASQIIF LLVGLIIGITI >gi|197282957|gb|ABQU01000093.1| GENE 3 1146 - 1613 242 155 aa, chain - ## HITS:1 COG:XF2058 KEGG:ns NR:ns ## COG: XF2058 COG4959 # Protein_GI_number: 15838650 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, protease TraF # Organism: Xylella fastidiosa 9a5c # 27 149 30 171 178 62 31.0 3e-10 MRKAIAIFAFSFAFLLILSYLIFYFGGFHFNYTRSMPLGLYKEINSSTLNKNDIVLLKIP QKKEILLKKIVAVSGDFVEVNKQGVFINKILMPDSKIFSFDSKGNPLEFKPFKHTLKENE LFVMGENIKSYDSRYFGVINILQNEVKKVKIVILF >gi|197282957|gb|ABQU01000093.1| GENE 4 1618 - 2280 703 220 aa, chain - ## HITS:1 COG:XF1657 KEGG:ns NR:ns ## COG: XF1657 COG2184 # Protein_GI_number: 15838258 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Protein involved in cell division # Organism: Xylella fastidiosa 9a5c # 19 209 21 202 203 119 36.0 5e-27 MWDSQENLSEFDKFLIKTNKIGAKSLDELFRKERMITNKKALELGKNPIKGNFDYQHLKD IHKALFEDVYTWAGQDRMQMGLKEKFAKYAPNGAIINFVPGKELDKYSKIIFDELAKNNY LKNSKDLNHFAKNLAKFMGEINALHPFREGNGRTQRIFLNELAKNAGYKLDLNLISKHKM IHACVEASQLKPGRLEALIKDNLKNFRQNLDLEQNKGMSL >gi|197282957|gb|ABQU01000093.1| GENE 5 2280 - 2519 318 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308847|ref|ZP_04808002.1| ## NR: gi|242308847|ref|ZP_04808002.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] # 1 79 1 79 79 136 100.0 4e-31 MQKQYPEVHSLEESLAILKKYKDDLTKEQYEAIRSNIGNFAIEDMFLNEKDIIDNVKIIK GEATANECIVALKKEWGVS >gi|197282957|gb|ABQU01000093.1| GENE 6 2622 - 3341 688 239 aa, chain - ## HITS:1 COG:no KEGG:Bamb_6608 NR:ns ## KEGG: Bamb_6608 # Name: not_defined # Def: conjugal transfer protein TraL # Organism: B.cepacia # Pathway: not_defined # 1 237 1 237 241 191 42.0 2e-47 MAKIHFVLNGKGGIGKSFISSLLCQYFLDKGESIVAIDTDPNNTTLLNVKALKAKFLQLI DDDGKFDVRAFDKIVELAFEKKAKNYIIDSGATTFIPLIDYLKENEVLDFLTSNSLEVYM HVPIVGGQARDDTILGLTQLTQAFNCSFVVWVNEYHGSIIKDNLEFEETKEYQAIKEKIK AIIYLNALSKDTFGKDLLELTSKNLTFDEAMQDKSFSLMSKQRLKIFKDKAFIQIGNIL >gi|197282957|gb|ABQU01000093.1| GENE 7 3352 - 5175 1447 607 aa, chain - ## HITS:1 COG:mlr6395 KEGG:ns NR:ns ## COG: mlr6395 COG3505 # Protein_GI_number: 13475349 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD4 components # Organism: Mesorhizobium loti # 8 594 71 617 735 344 34.0 4e-94 MKKQTNQALVYTLGLIGIFLTFTIISQIATQYLAKSFNYSPSLGETLLYGFYNPFKWISW SYAYYSFYPDFFKKFFMAMFAGVAFCFIVFILVKLAFLRKAKAIENLHGSAHWATLEEVK ESGVFDKDKGVYIGGFEHKKTLHYLRHDGPEHVMLFAPTRSGKGVSLLLPTLLSWGESAL IFDIKGELWALTAGWRQKYAKNKVLKLDPTCLDDSAVKFNILEEIRLETMHEVKDTQNIA INLIFKGETPPTNPTQGSTSYFKSEAGNFLVSIILYALHLKKYRGENTPNLTDIYKFIND PNQSIDELLEEMVECDISTMDKNTQEIIQSISRSMKNKATQELSGVVGTASEALNLYIDP ILAKNTAKSDFKIKDLMNYESPISLYLIIPPGQKDRLRPFFNLLINQIFRTLTDDSLNFK NGENIKRYKHKMLVLADELTMFGKLGVLEENLAYMAGYGMKFYGSIQDIQQLYSIYGEKE TIISNCHIRIAFAPNKIETAKLLSEMGGITTIIKKSLTSSGKRTAVMLGNVSETIQEVQR PLITADECMRLPSAKKDKDDKIIAPGDMLIFIAGQAPIYGKQILYFKDPAFLARSKVTLD KQVSDIL >gi|197282957|gb|ABQU01000093.1| GENE 8 5172 - 7382 2124 736 aa, chain - ## HITS:1 COG:XF2061_1 KEGG:ns NR:ns ## COG: XF2061_1 COG4227 # Protein_GI_number: 15838653 # Func_class: L Replication, recombination and repair # Function: Antirestriction protein # Organism: Xylella fastidiosa 9a5c # 4 298 217 511 522 308 51.0 3e-83 MKNKDFIQETADKIIESLKNGTAPWIKPWKGIDLANNMPYNPITNKPYNGINSINLMLQN YNDPRWLTYKQAQSINAQVRKGEKSTLIQYWQFSEMVDKLDEEGNVITNEKGEVEKIEVK LENPKVFFAYVFNAEQIENMPKLEQKHEIDNFQTIKEAQKILDDSKAIIHHQGNRAFYNS TNDTITLPPKENFLSEGAYYATALHELGHWSGHSSRLNRDLNNPFGSKEYAKEELRAEIA SFLFNGKIGLDYDPGQHLSYIDSWVQILEDKPHEIFKATSDATKIVNFIENLSLEQKQKI ELENSNTQKQELTQDKELNLATRKTYLYVPFAEKEFAKKAGAKWDKEAKMWYAPKGADLK NFNQWLNQEQTQIYNNAYDEFKAFLEKHELNIEGQPIMDGKLHRVSVIGDKGREKSGAYV GFLNGHPAGFVQNYKTGIKENWKSANSFENTKNQEIDFKNAMEHNKAMKEAREKELIQAY EKTALKLEDEYNNARWANSEHPYLKEKGFDKNFYLKQDKNGNLLIPLRDIDGKYWATQRI FANGDKMIGATRTVEEKEQGIEYPAKKQGNFFLLGAKNLDNVNEVYICEGFATSASVYEA TKSPTIMGVDAGNLEIIVTSIKEKYPKMNIIIAGDNDVKKELNGNKNVGKTTALGIKEKY PEVKVVLPNFTNEEAQKGLSDFNDLMKSRGLEEIKKQLKEQIAKQLIVEKATTKALDKNK GINKEISTKKDIGISL >gi|197282957|gb|ABQU01000093.1| GENE 9 7387 - 7527 294 46 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308851|ref|ZP_04808006.1| ## NR: gi|242308851|ref|ZP_04808006.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 46 7 52 52 65 100.0 8e-10 MKDFKELETIPNFSYEVDPLTAEELGAFEENALSKEDAKEGIEDQG >gi|197282957|gb|ABQU01000093.1| GENE 10 7514 - 7876 429 120 aa, chain - ## HITS:1 COG:TP0062 KEGG:ns NR:ns ## COG: TP0062 COG0629 # Protein_GI_number: 15639056 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Treponema pallidum # 2 98 4 104 176 71 36.0 4e-13 MINNIIIGGRLTEDAEIKRTNQGVAICNFTLANNRKYKETEFSTYIEVSLFGAFAEVMQP HLKKGIAIDVIGELMQDVWDHEGKTYYKHKIKAKEIDFRTPKKEKQAIQNIEEGENYEGF >gi|197282957|gb|ABQU01000093.1| GENE 11 7866 - 8420 527 184 aa, chain - ## HITS:1 COG:no KEGG:PBPRB1621 NR:ns ## KEGG: PBPRB1621 # Name: not_defined # Def: conjugal transfer protein # Organism: P.profundum # Pathway: Bacterial secretion system [PATH:ppr03070] # 1 150 1 154 175 111 46.0 1e-23 MIDIALIEQCKNPNVETQIIQKIIQIESNNQQFAININKVGSFMLKTKKEAENLANNFIK GGYSVDIGLMQFNSNNLKSSTFSHYSVEDLLDTCKNIKAGSDIFYLAYEATDEKLSKEER INQALSIYNTGNLEDGFNNGYVAKYNYISPNINLLEKARKSETRIEIKFQPFNLQTQKRI QNDK >gi|197282957|gb|ABQU01000093.1| GENE 12 8591 - 9823 1207 410 aa, chain - ## HITS:1 COG:XFa0040 KEGG:ns NR:ns ## COG: XFa0040 COG2948 # Protein_GI_number: 10956751 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB10 components # Organism: Xylella fastidiosa 9a5c # 5 402 12 458 469 205 32.0 1e-52 MLEINTSPNKFLPKNNKRLSKVPIIILFSIAVIVLFSIFYVAVSRKQNLEKQATQTTPKE QIQTTTNPNNTNLDTYINDLMQNQKLQANNTNPLPIPNPTQPPIQEIKPQPIQTNNPPVL IQDNAMDEREMKVKKDMQLKALLSDTKLNIKTETNNKNQTINFNPPSNSNEDINAINVVN PSPSIGLEGNTNKDAQGQQFLSQKNDNGYLKYTKQKPLSPYEIKAGWNIPAILITGVNSD LPGQILAQVTQNVYDTSTGKYLLIPQGTKVVGAYSSNVIYGQSRLLVAWNKLIFPNGDTL NLDSMQGASQDGYTGFEDEVDNHYFRIFGSAFLLSSISAGIALSDNSDTNSEKETASDKA IAQAIQQMGQVASEMIRKNMNISPTLKIRPGYKFNIFVTKDIILEPLELR >gi|197282957|gb|ABQU01000093.1| GENE 13 9834 - 10271 385 145 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308855|ref|ZP_04808010.1| ## NR: gi|242308855|ref|ZP_04808010.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 145 1 145 145 217 100.0 2e-55 MRILFLALIAFFITSCAKMNSDYFNSSFAVEETKINYNKIADDFSQFIIPHYPPNKTTFF INEDKSNQDFSNYFMNALRKKGYAISNDNSKKDLTFLSYQISQIDNENIVAIFNINESKI NVIYKIIDNKLVKNNTTSFNFTPQN >gi|197282957|gb|ABQU01000093.1| GENE 14 10268 - 11197 752 309 aa, chain - ## HITS:1 COG:AGpT73 KEGG:ns NR:ns ## COG: AGpT73 COG3504 # Protein_GI_number: 16119845 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB9 components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 8 281 17 288 291 207 38.0 2e-53 MKKIILLGSLIASSLIANNLNERDFANLTPKEKKDLAIAQKWINSKTTTIQGNNGEVIFL FGESMPSIVTAPLRLTDIALEPGEVIKDVQIGDSIRWAVSLSISGEEPYLISHIIVKPTD KNLQTTMNIMTNKRVYRLNLISEAKKFMPAVSFNYPNSIIKTLEDYKNQMKAKSEAKNFY KTKDDEIPSNIENLDFGYSIEGNAPFKPLRIYNDGIKTYIQMPKNLKFYEAPALMVLDSS NEKQIVNYRLKYDTFIVDRLFNKAILLSNVGSKQEKITITKHSNKANQDIVNNVLYDLSL QNKNKKENK >gi|197282957|gb|ABQU01000093.1| GENE 15 11210 - 11905 635 231 aa, chain - ## HITS:1 COG:AGpT74 KEGG:ns NR:ns ## COG: AGpT74 COG3701 # Protein_GI_number: 16119846 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, TrbF components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 19 231 8 220 220 134 30.0 1e-31 MNIFRQKQKIEKSEIDTSNNPYLNAKTEWLERYGDYITRAKNWQIVAMASLGICFICVLF LGYIGSQNKLIPYVIEVDKLGNTAKVGMVQNIDLKNPNVIKYSLNTFIYSWRSVWGNAET QRKFIFDAYAYIEPRSKAFNYLNSEFQKNNPFARATKENVRVKIKSIVPQNIDTWQVEWE ETTTNLNEDILSKETYRGLIQIKQIIPNTEEQILKNPLGIFITDLNFAKIL >gi|197282957|gb|ABQU01000093.1| GENE 16 11925 - 13184 1206 419 aa, chain - ## HITS:1 COG:XF2046 KEGG:ns NR:ns ## COG: XF2046 COG3846 # Protein_GI_number: 15838640 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, TrbL components # Organism: Xylella fastidiosa 9a5c # 51 292 34 278 464 81 23.0 3e-15 MQNGRLKQMGLRMRVVLGVNQTQTLLSGNKLAIIFLIFLVPNLAFGAENADGILSLIRNG ILSWTPLIKTACLWVFWTLVVIDLVWTFGLKALSGFEFGDFIATLIKKIMYIGIFLFLFN IDQWLQIIFNSFSQLATSVNNGISITPQNIIEQALNLVGKIIQSMDFWSPGDSILKVVAG VIILIAFVLMAIDLLIVYLKFFLMNVIVFFALALGGLSHFKQIGLNPIMTAIKVGVELFM IQGLMALSITMIDVINNEITQKSTADVILQILVVALIFCMITKMVPGIIEAVFNGSIGES AGASAGFRAVATMAAGAAAGAAVGAVGATRAMNAAKALHLAEGGAGGMDLVKGVAKNLAG AGGEHLRDNLTRGRMPHQMANRLQEKLRDIQGKASEGGISAGTPKQENYQSGINPDVME >gi|197282957|gb|ABQU01000093.1| GENE 17 13096 - 13365 347 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308859|ref|ZP_04808014.1| ## NR: gi|242308859|ref|ZP_04808014.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] # 1 89 1 89 89 165 100.0 9e-40 MKHFIFGGLLSLGALAFLAGCGDEAKTSDYYKTHIDEAKARVAECKKMEKMNETQQRDCS NAKWAIETNGLENAGSSWGKSNPDALKWK >gi|197282957|gb|ABQU01000093.1| GENE 18 13414 - 13650 180 78 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308860|ref|ZP_04808015.1| ## NR: gi|242308860|ref|ZP_04808015.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 34 78 1 45 45 73 100.0 4e-12 NGNLQAIQATNDLITYQIDEIRKLRSVIMDQSNMLTNYLASQNNQRIMQQAKIDKFLENA EKSGSSWGKSNPDALKWK Prediction of potential genes in microbial genomes Time: Tue May 24 03:01:45 2011 Seq name: gi|197282956|gb|ABQU01000094.1| Helicobacter pullorum MIT 98-5489 cont2.94, whole genome shotgun sequence Length of sequence - 5074 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 1, operones - 1 average op.length - 6.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 550 506 ## Sdel_0761 P-type conjugative transfer protein TrbJ 2 1 Op 2 . - CDS 564 - 1244 474 ## CHAB381_0141 TrbM protein 3 1 Op 3 3/0.000 - CDS 1241 - 3706 2072 ## COG3451 Type IV secretory pathway, VirB4 components 4 1 Op 4 3/0.000 - CDS 3708 - 3995 198 ## COG5268 Type IV secretory pathway, TrbD component 5 1 Op 5 3/0.000 - CDS 3995 - 4291 455 ## COG3838 Type IV secretory pathway, VirB2 components (pilins) 6 1 Op 6 . - CDS 4301 - 5074 624 ## COG4962 Flp pilus assembly protein, ATPase CpaF Predicted protein(s) >gi|197282956|gb|ABQU01000094.1| GENE 1 1 - 550 506 183 aa, chain - ## HITS:1 COG:no KEGG:Sdel_0761 NR:ns ## KEGG: Sdel_0761 # Name: not_defined # Def: P-type conjugative transfer protein TrbJ # Organism: S.deleyianum # Pathway: not_defined # 11 183 2 177 258 64 29.0 2e-09 MKNFIFGVNQKSKKLSLALISSLIIGNNAFAGGIPVIDFSAIANQVKDYAMQLQQYEQMY SQLQQQLLMVQMQKQNLERLSKEDWQSLGTVLYQVRGVMNRVNGISYDIGNVSRKFENTY KNFAGYSDDLTNATNESERNKIYSDRYKQIAETNQNTFNGTLQQLELQYQDLESEDTLIA KLK >gi|197282956|gb|ABQU01000094.1| GENE 2 564 - 1244 474 226 aa, chain - ## HITS:1 COG:no KEGG:CHAB381_0141 NR:ns ## KEGG: CHAB381_0141 # Name: not_defined # Def: TrbM protein # Organism: C.hominis_BAA-381 # Pathway: not_defined # 8 224 1 230 234 144 39.0 2e-33 MKHFIFGVKKITLALGATLLISNNAFADDVLTGDTRLACEAILCLSSGTRPGECSSSLAR YFSIKFKKPWETVNARRAFLNLCPVQNDANIEDLVLNNLVDDVLPASDPRQCTPEYLNTQ VEQSNNTYLDELLGNRSYRIKTTMPNFCYSLINHEYTDYKTPKYKCSGEFYSALEWRLSA RLELVNWQEYQSLNDSQRYAISRSCGDNTCYTYFKKTPFSKICWTY >gi|197282956|gb|ABQU01000094.1| GENE 3 1241 - 3706 2072 821 aa, chain - ## HITS:1 COG:AGpT83 KEGG:ns NR:ns ## COG: AGpT83 COG3451 # Protein_GI_number: 16119850 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB4 components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 810 1 814 822 744 43.0 0 MLALKEFRNKAKAFPDILNYASFIDEGILLNKDGSLTAGFYYRAGDISSMTINERNTLSA RINSVLKTLGNGWAVHIDCSRIKTENYIDGDTFYQSNIAQILENERKHYFDNVEHFENLF TMIFTYLPPHKNISKITDLMIIDETKNKNQSNKILEYFKNILQKLEDSLSNYIKIERMLP RTAIDEYNNEYILDDMLEYINFCICGERQKIILPNAPMFLDCLLGGRHFETGMYPRIDNQ HIGIIAIEGFPSESYPNILNALTELNFDYRFNTRFIFLDDFDAQNSLNKYRKKWQQKTKG WVDQLLDRPARRLDNHAVLMVQELDSALAESKTGLLGYGYYTANIVVFDRDNESLEHKLK DIRKVLENLGFLSRTETINSVEAYLGTLPGFVYPNLRRPVLNTLNLTHLIPLASIWAGEK YNPSDKFPPNSPPLMQVVTSGNTPFRLNLHVSDLGHTLIFGPTGSGKSTLLANIFLSFQK YKNAKIYAFDKGQSLLAPTLATGGIHYNIAGDHSSLAFAPLANIKTEAEIAWAEFWIETC LKLQNVNVTPKHKKLIHEALISHINTKSTSLTEFVSALQDNDLRDALSYYTISGTGGFLF DSEEDKLSLSNITTFEIEELMSLGDQYIVPALLYIFNRIERGLDGSPTLLIIDEAWIALK HSAFKDKIVNWLKVLRKANVAVVMATQSLSDSAKSGILDVLQESCPTKIFLPNSDAFKKG TETTLAPYDFYKIFGLNDVQIGIIANAIPKREYYYTSPLGTRLFNLALGKTNLAFTGISD KIGVKRVNQLYEKHKEEWAYKWLEEKEINYKRFNNSQKEQI >gi|197282956|gb|ABQU01000094.1| GENE 4 3708 - 3995 198 95 aa, chain - ## HITS:1 COG:AGpT85 KEGG:ns NR:ns ## COG: AGpT85 COG5268 # Protein_GI_number: 16119851 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, TrbD component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 94 8 98 99 90 46.0 5e-19 MEELQKIDIYSALNKPNLIFGADRELMLITGLISFALIFTGATLITSVIGIALFFVCGLL LRLMAKSDPLMRQIFIRQNKYKKFYYPQSTPFSKD >gi|197282956|gb|ABQU01000094.1| GENE 5 3995 - 4291 455 98 aa, chain - ## HITS:1 COG:XF2055 KEGG:ns NR:ns ## COG: XF2055 COG3838 # Protein_GI_number: 15838647 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB2 components (pilins) # Organism: Xylella fastidiosa 9a5c # 18 98 48 128 144 67 44.0 6e-12 MQRFLFLFLVLGLGYALASTTGAGLPWEDPLETIKASLSGPVAGVVSILAIIGAGAGLIW GGELSGFIKTLIYIVLVIAIVVGAGNFMGIFNTSGALI >gi|197282956|gb|ABQU01000094.1| GENE 6 4301 - 5074 624 257 aa, chain - ## HITS:1 COG:AGpT89 KEGG:ns NR:ns ## COG: AGpT89 COG4962 # Protein_GI_number: 16119853 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Flp pilus assembly protein, ATPase CpaF # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 255 77 331 343 271 53.0 6e-73 VSEAKAKSIITAVSTLLDTTTNADNPILECELPLDGSRFEALLPPIVAKPTFTIRKKAVK IFTLDDYVDSNILTPKQKEVLINAITERQNILVVGGTGSGKTTFSNAIIDGISKITPEHR IVIIEDTAELQCASKNKVILRATDKVDMLRLLKATMRLRPDRIIVGETRGKEALDLLKAW NTGHPGGIATIHANSANGGLTRMEQLISEATTAKMSKLIAEAVNLIVFISKTKEGRKIKE IIKVIDFENNKYITQTI Prediction of potential genes in microbial genomes Time: Tue May 24 03:01:56 2011 Seq name: gi|197282955|gb|ABQU01000095.1| Helicobacter pullorum MIT 98-5489 cont2.95, whole genome shotgun sequence Length of sequence - 12142 bp Number of predicted genes - 13, with homology - 12 Number of transcription units - 4, operones - 2 average op.length - 5.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 253 - 795 571 ## COG2353 Uncharacterized conserved protein 2 1 Op 2 . - CDS 867 - 1790 801 ## COG0500 SAM-dependent methyltransferases 3 1 Op 3 . - CDS 1790 - 1996 310 ## gi|242308832|ref|ZP_04807987.1| predicted protein 4 1 Op 4 . - CDS 2012 - 3016 748 ## COG1565 Uncharacterized conserved protein 5 1 Op 5 . - CDS 3016 - 4980 1876 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 6 1 Op 6 . - CDS 4934 - 5758 888 ## COG0682 Prolipoprotein diacylglyceryltransferase 7 1 Op 7 . - CDS 5733 - 6044 334 ## gi|242308836|ref|ZP_04807991.1| predicted protein - Prom 6111 - 6170 8.8 + Prom 6026 - 6085 8.6 8 2 Op 1 9/0.000 + CDS 6189 - 6809 715 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 9 2 Op 2 7/0.000 + CDS 6806 - 7918 1187 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 10 2 Op 3 4/0.000 + CDS 7919 - 9730 1737 ## COG1086 Predicted nucleoside-diphosphate sugar epimerases 11 2 Op 4 . + CDS 9714 - 10781 718 ## COG0438 Glycosyltransferase 12 3 Tu 1 . - CDS 10761 - 11675 485 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 11850 - 11909 9.1 + Prom 11797 - 11856 8.0 13 4 Tu 1 . + CDS 11881 - 11991 189 ## Predicted protein(s) >gi|197282955|gb|ABQU01000095.1| GENE 1 253 - 795 571 180 aa, chain - ## HITS:1 COG:HP1286 KEGG:ns NR:ns ## COG: HP1286 COG2353 # Protein_GI_number: 15645899 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Helicobacter pylori 26695 # 1 180 1 182 182 133 42.0 1e-31 MKKFLSISAFVALLGCPLLAQPYTLDSQNSKVDFQISHLKLTKVDGKFKKFSANIDYDLA TKKLNILEGSVEIASVDTANAKRDEHLNAADIFDSKKYPNMTFKMTKFEAGKISGDLTIK GITKPVIFESTETLKDKTLQIQATAKIKRSDFGVVWESNLKDSLVGDEVTILLTLIANPQ >gi|197282955|gb|ABQU01000095.1| GENE 2 867 - 1790 801 307 aa, chain - ## HITS:1 COG:Cj0976 KEGG:ns NR:ns ## COG: Cj0976 COG0500 # Protein_GI_number: 15792303 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Campylobacter jejuni # 22 305 19 295 296 236 45.0 6e-62 MQTLQSIQDRRNLALTHKHITPLLESLNRLKNIPANELQNATFSPNDFITLHLPYLSKAS LELIAHIAKTLIPWRKGPFCINSLEILSEWNSAIKYNLLSPHLELKNKIIGDIGCNNGYY MFRMLEQNPKQIIGLDPMPLCKLQFDFMQFFIRDSRLDFKLLGIEDLPFLEIKFDMLFCL GVLYHRKSPLDSIKIIYDSLAKNGEAIFDSIIIPGNEEIALCPKNKRYAKMPNVYFIPTL KTFINWLESCGFRKITHIATLKTGIDEQKKTPWSNAQSLEDFLNADQSKTIEGYPAPQRA YLKAKKY >gi|197282955|gb|ABQU01000095.1| GENE 3 1790 - 1996 310 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308832|ref|ZP_04807987.1| ## NR: gi|242308832|ref|ZP_04807987.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 68 1 68 68 124 100.0 3e-27 MKYLWFFNLLGIALLFSGCIYHNECGYSDSYWDEKSYYYDSQGNYIEVCPDNLLYKEGKQ PKMQDETF >gi|197282955|gb|ABQU01000095.1| GENE 4 2012 - 3016 748 334 aa, chain - ## HITS:1 COG:jhp0748 KEGG:ns NR:ns ## COG: jhp0748 COG1565 # Protein_GI_number: 15611815 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Helicobacter pylori J99 # 1 333 1 332 336 189 36.0 6e-48 MQPFSHLMQQWLYGKEGYYQNHKIGKDGDFYTSVSVSPFFGYCIANFIADFFTKLPPLQK IAIVEIGADKGYLISDIASFLAHNPLFAKLSFHTLEPLKNLQTTQKSTFYSKTSQTLHTL DSPKDLQAQNYDFTFFISNELLDSFACELYYKGEMAYLQDNSLLFAPASKEIIEIAQAME LEIGEIPLHLESFLASLTQYTPSFAFLTFDYGDLKARNAFSLRFYQNHTTNNLFLNPTSK DYYPNFLESFGKSDITYEVHFDYLKNLFKAMNAKELFFGRQNKILVDMGLDKVGEWYIQN FGLESFMHHSPKIRTLIDPAFLGERFFGIGFARI >gi|197282955|gb|ABQU01000095.1| GENE 5 3016 - 4980 1876 654 aa, chain - ## HITS:1 COG:Cj0888c KEGG:ns NR:ns ## COG: Cj0888c COG0488 # Protein_GI_number: 15792218 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Campylobacter jejuni # 14 652 1 641 643 584 54.0 1e-166 MYCFLNPKIQRAKMSNISLQNISKQYNYKAILNDISLSVQEGQRVAIIGKNGAGKSTLLK ILSGELEPDEGSRILQGNLEIKHLIQKPHFKEGQSVKEVILESLEEITKARKKLEEIAQA LQNTSDDKALLQEHSMLSAFIDHHNAWDLENKIQQILETFALKKLENNFVNLLSGGEQKR VALACLLLSKPDILLLDEPTNHLDVQMVEFLEDLLLKEKWTLIFISHDRYFIDRIATRII EVEDCKIRNFKGGYGDYLKEKEELLKSLAKSHETLLKHLKAEEEWLARGVRARVKRNEGR KERIMQMRQEAKSNPSIIRKMTLELEREKKHFNQEDGTNRKKMLFDLQNISFAIDNKTLI QNFSTRILQRDKIAIVGKNGAGKSTLLKLMLGKLKPKEGKIECGEVRIGYFDQHREMLDD SKNLLETFCPFGGDHIDVRGKSMHVFGYLKNFLFPKEFLDNKIGSLSGGEKNRVALALLF TKEYDCLILDEPTNDLDIPTINILEEYLQSFEGAIIFVSHDRYFVDKIAKKLLVFKENGE IEETHRSFSEYLEIEKELKEYQSFEKSLQSPKEKPKQEKPKTKLSYNQKRLLEILPHEID ALESQIKAIESKLYSNTLSANELQELSLELEAKKALCEEKTMQYFELEEKQEGF >gi|197282955|gb|ABQU01000095.1| GENE 6 4934 - 5758 888 274 aa, chain - ## HITS:1 COG:Cj0407 KEGG:ns NR:ns ## COG: Cj0407 COG0682 # Protein_GI_number: 15791774 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Campylobacter jejuni # 1 255 1 253 271 286 64.0 4e-77 MEKWNNIYSTFDPIAFNLFGIPVHWYGIMYVLALLVALFVAKWIAKKDSYPISDSLLDSY FLWVEIGVILGARLGYIIFYDPFTPYYLTHPWQIFNPFDREGNFVGIRGMSYHGAVIGFL IASLIFAKIKKINFWLFMDLAGLSVPLGYVFGRIGNFLNQELVGRETTSQLGIYVDNILR HPSQLYEAFLEGIVVFIILFLWRKKASFVGQIGIMYGLLYSLMRFIAEFFREPDSQLGFI AFNWLTQGQLLSLIIGGLCLVLLFKPKDSKGKNV >gi|197282955|gb|ABQU01000095.1| GENE 7 5733 - 6044 334 103 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308836|ref|ZP_04807991.1| ## NR: gi|242308836|ref|ZP_04807991.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 103 1 103 103 174 100.0 2e-42 MRIEKLKENVYILHGKMKDISDYYDIKLLLEKMRREQNMEVFFDIPQAKEITFYILGYWL KLARKDNFKFHIYIANPYLYNNFLNMGLNEFFKVTNGEMEQYL >gi|197282955|gb|ABQU01000095.1| GENE 8 6189 - 6809 715 206 aa, chain + ## HITS:1 COG:CC1011 KEGG:ns NR:ns ## COG: CC1011 COG0110 # Protein_GI_number: 16125263 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Caulobacter vibrioides # 12 202 18 209 215 125 35.0 5e-29 MERFAIFGAGGHGRVIADMILACGGEIAYVLDDAPSAKSLAGKEAITKEKFLTISSQKEI KIALAIGDNHLRKEIYYFFKQKGFELPSIIHPSAIISEESMIEEACVIMPNVVVNAKSSV GVGVILNTACVVEHDCAIGSFSHIAPRSVMCGGVSVGEMTHIGAGSVIIEGKKIGDSCLV GAGSVVINDIESFKKVVGNPAKKELK >gi|197282955|gb|ABQU01000095.1| GENE 9 6806 - 7918 1187 370 aa, chain + ## HITS:1 COG:Cj1121c KEGG:ns NR:ns ## COG: Cj1121c COG0399 # Protein_GI_number: 15792446 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Campylobacter jejuni # 4 369 2 386 386 449 58.0 1e-126 MSFRVFLSPPQMGKNEQKYVDEAFKSNYIAPLGEFVNRFENRMQDYTKSANALALSSGTA ALHLALRVAGIGKGDFVLASTFTFIGSIVPILYQGAIPVFIDSDESWNLSPKLLQEALDK LKTKPKALIVTHLYGQCAKLDEIVEICKEYGILLIEDAAESLGAFYKDKHTGTFGEFGAL SFNGNKIITTSGGGMLLGKDMHKMQKARYYSTQARENLPYYEHLDYGYNYRLSNICAAIG VGQLEEIEAKVAKRREIFEWYCENLSHDLVEFMPEVQDSRGNRWLTTLRFKHSRANPMEL VEILAKKGIESRPLWKPMHLQPLFRDSMNFCDGSSQELFNSGICLPSGGAMDKEIVFEIS NYVLDYLKSL >gi|197282955|gb|ABQU01000095.1| GENE 10 7919 - 9730 1737 603 aa, chain + ## HITS:1 COG:Cj1120c KEGG:ns NR:ns ## COG: Cj1120c COG1086 # Protein_GI_number: 15792445 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate sugar epimerases # Organism: Campylobacter jejuni # 12 599 6 586 590 507 47.0 1e-143 MIKSAIFRPSNTKRIVFFLLIDVIVSYFALILSYDLRFSFQVPLEFSKEVALVFCALIAL KVCALWIFKVYLVPWRFFGLSEALKIIYAHILAYGIFMLLSFLGLFGAFPLSVVVIDFVI SGILIGGIRISKRIYLENSPKNSPKPALIFGANTQASTLIKSALNSEIPFYPLAIIDEDE KSQGSYISNLKVYPKTALKELLEKHKIKSAILTQAYAKPPLEKLFNELTKMGIEEIKIAS MLKEDRHLEDISIEDLLSRPSKDLDKEVIGSFIRNKKVLITGAGGSIGSEIVRQCVEFGA KRIILVEHSEYNLYAITEELTKKTPIKNLDKTELLRPVMLSILEKERLLPLMQEEKPDIV VHAAAYKHVPLCEYNQKSAIENNVIGSKNVIDCAIESKVPKIVIISTDKAVRPTNVMGAT KRIVELYAQNVDPKESEIVAVRFGNVLGSSGSVVPKFKAQIQSGGPITVTHPDITRYFML IPEACRLVLQASAIAKGGEIFILDMGEPVKIVDLAKNMLKLYGKEDEIEIVFSGLRPGEK LYEELLIGESEGKTKYPSIQVARPTNYDIKKLNEDINELLKTQDIIAKLQEIVVEFHHNA HAN >gi|197282955|gb|ABQU01000095.1| GENE 11 9714 - 10781 718 355 aa, chain + ## HITS:1 COG:Cj1129c KEGG:ns NR:ns ## COG: Cj1129c COG0438 # Protein_GI_number: 15792454 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Campylobacter jejuni # 9 353 4 358 359 146 29.0 7e-35 MHTQTKKTLAFVISSLRMGGAEKVASFLANHFVDSYDVILVLWSDENRFFEVDKRVKIIV LPAKMRGIFGNIERIFGLIKCFKSFRVDLAVSFIHQTNILTIIASKIAKIPVIATEHSIY ASLDNSKMWKFLRRIIYPLANQVTTLTKGDLENYRFLKNVCVMPNPVSLEVCSEPNLEIY KPYILSAGRMIKTKHFEELLEVFGEFSKQNPKFSLLLAGDGECKDSLQKQAESLGAKIVF LGRVENLYNAYKNAEFFALTSHREGLSNVLIESLMCGIPAVSYDCPYGPSEIIHNKKNGI LVEMGNKQALLEAFLEMSQKRDSFAKNTQEIYAKYGVGEVFKKWQEMICLMLNKE >gi|197282955|gb|ABQU01000095.1| GENE 12 10761 - 11675 485 304 aa, chain - ## HITS:1 COG:RSc1002 KEGG:ns NR:ns ## COG: RSc1002 COG0697 # Protein_GI_number: 17545721 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Ralstonia solanacearum # 22 300 19 296 312 107 29.0 3e-23 MLYYTPQNIYGDFMQKLTHEQIGILWITSASIAYGMMPIWSVFVQDSGISTEYLLLFRFI CTALLLFSWSIYKKISLKLPMPYLFKFLFLGGVLYIVQSFAYLDSLRFIPASLSVLLYHI YPAIVALIAIIFLKDKITPKMLFCLITSFIGLVVILQPSSYLALNFYGIFLSLVGALFYG LYVIFSKNLAQKFSSIVCSFYVCLFASLAILCYIVIDLPNLQNIKANGILALLGLTFVST LFPMIAYFLGMSKIGVTKTAILGMIEPLVGVLLSLWILGESLTLIQCLGACLIFFGSILL FIKH >gi|197282955|gb|ABQU01000095.1| GENE 13 11881 - 11991 189 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKRILKSIIAVSLLAGLAVGMSGCNPDEIDSYYGAF Prediction of potential genes in microbial genomes Time: Tue May 24 03:02:12 2011 Seq name: gi|197282954|gb|ABQU01000096.1| Helicobacter pullorum MIT 98-5489 cont2.96, whole genome shotgun sequence Length of sequence - 5737 bp Number of predicted genes - 6, with homology - 5 Number of transcription units - 4, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 79 - 2235 1992 ## SUN_2446 DNA relaxase TraI 2 1 Op 2 . - CDS 2198 - 2581 373 ## SUN_2447 DNA transfer system protein TraJ - Prom 2658 - 2717 9.9 + Prom 2676 - 2735 7.1 3 2 Tu 1 . + CDS 2783 - 3106 309 ## gi|242308827|ref|ZP_04807982.1| conserved hypothetical protein - Term 2980 - 3039 1.1 4 3 Tu 1 . - CDS 3101 - 3436 232 ## - Prom 3457 - 3516 14.6 + Prom 4076 - 4135 11.9 5 4 Op 1 . + CDS 4158 - 4994 664 ## JJD26997_0956 hypothetical protein 6 4 Op 2 . + CDS 4997 - 5416 347 ## COG2402 Predicted nucleic acid-binding protein, contains PIN domain + Term 5549 - 5601 -0.8 Predicted protein(s) >gi|197282954|gb|ABQU01000096.1| GENE 1 79 - 2235 1992 718 aa, chain - ## HITS:1 COG:no KEGG:SUN_2446 NR:ns ## KEGG: SUN_2446 # Name: not_defined # Def: DNA relaxase TraI # Organism: Sulfurovum_NBC37-1 # Pathway: not_defined # 1 507 1 516 535 263 38.0 2e-68 MIIKKIPSKKQNKSSFKNLSNYILDKDNNNAKVLVDYMLDKNNEMDKVEGYHFTNCSFDN DEDNINEIINTQKLNTTTKQDKTLHLVVSFQEDEKPTLEILQTIEEEIAKSLGMSDHQRL SVIHSNTNNLHIHIAINKVNPHTLKVINPYNDVRILQETAMKLEKKYNLKLDNHISQKDK QSNKYNIHTMNCNFETWVKEKLSKQVDLMLKDEKTTFKDIKQLLAKYDLEFRERRKGFVI ASKSEKLFCKASSIHRELSKQALEKRFKELDLKQEKENTEKIEEEKQEIKERYQRPNKET SKALWEKYLRIENEKKAELDKELRMLKLRRNEFKTSIPSMKFSKETFKHVKNQRMIFKNK QKELYQKYKRVSYRDFLISESLSGNEEATRALRRSKTKINENENTLSSEQEKPKIFENVD YITKEGYAVYKSGFNKAIDKGEMLKVSLINGKDDKEFLLNSLLMAIDRFGNHLNITGDEN FKRNILEVANDYNLNVSFTDPQMQKIQEGNNDKRQEMKARKILKNIIELKIKLTEQDTNI EDSVKEKELKALKFSLKKISDSTLLIFEGELKKIGFSRDEINSMDMQSVDTQIEGFIVNS INKKGLNAMNEEIKKTLRDDEERQRFEKFEYLFLNTDKVADVTKGFYANRKIDVDGYIEK FSMQESKISKVANAISMLSDKNIEIMEKYVKKLEKDLKYQYLKKAEVIESNDINLNNF >gi|197282954|gb|ABQU01000096.1| GENE 2 2198 - 2581 373 127 aa, chain - ## HITS:1 COG:no KEGG:SUN_2447 NR:ns ## KEGG: SUN_2447 # Name: not_defined # Def: DNA transfer system protein TraJ # Organism: Sulfurovum_NBC37-1 # Pathway: not_defined # 1 99 1 102 117 79 40.0 5e-14 MKKTKQVNIRLTLEEYNLLTEKAQNHGLTLSRYLRDLSMNYPITCIVDQKVAHNVLNIAG DIGRLGGLFKHWLVRNEDNKANFSNKRTYNDIDEIVDQILDLQILLKEQAKRIIQNDNQK DSKQKTE >gi|197282954|gb|ABQU01000096.1| GENE 3 2783 - 3106 309 107 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308827|ref|ZP_04807982.1| ## NR: gi|242308827|ref|ZP_04807982.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] # 1 107 1 107 107 142 100.0 8e-33 MKRGFAKIEFFANLEYLKQEYNKGYVVSKILYEKAKQDKNISMVYSQFNKYFNEVFKNKI EKKEITQENNQSLALENKEPIKVKIDTKSKKVFDAKFGKDIKEDDLL >gi|197282954|gb|ABQU01000096.1| GENE 4 3101 - 3436 232 111 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEKSKKERIEKLSEKTKNLNLDNELYIFVNNIKWGKKANILINCVDLGTNIEFYFSVFFS NKYFSRSGDFNFREYMENSFENNRILAVKFKRSKTGYLNCFNARIAEVSDL >gi|197282954|gb|ABQU01000096.1| GENE 5 4158 - 4994 664 278 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0956 NR:ns ## KEGG: JJD26997_0956 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_doylei # Pathway: not_defined # 1 278 1 280 280 202 43.0 2e-50 MKEIIDINNSNIVSTVYGIEKTNIDYTTGEIKEKDNILIKKVKKKDEFIKMMALNLQFLA TELENSEKTVLFLLMSNMNYKNIVNVNLDLRSEIIHKSKLHRNTVSRAINSLQEKKIVLK LDTDDLKKAYDVFAKNAFLINPNVIGKGSFRDLRNLRQTIVQNFNADRFEMTKEVFTEVE YKGLQEIKNNKEDYEIKAIQQTQNNNEKNTEIFLAKKGNVNVLENKQPTLFDNEENNKEV LGDFWSMCGILTGAYHPTKSAKELKREKLDQDLKEGRI >gi|197282954|gb|ABQU01000096.1| GENE 6 4997 - 5416 347 139 aa, chain + ## HITS:1 COG:aq_aa03 KEGG:ns NR:ns ## COG: aq_aa03 COG2402 # Protein_GI_number: 10957043 # Func_class: R General function prediction only # Function: Predicted nucleic acid-binding protein, contains PIN domain # Organism: Aquifex aeolicus # 2 131 4 131 144 59 34.0 1e-09 MKKVYLDTNILLDYFNSERAYHNEARQLVYYLLTNNIQIVFSEDMISTLVYILKKTNIDM MQFYNYLSKITLDPKILICSFSGSVIRSACQMCQSYNDDFEDYLQYFCAEKENCCAIYSM DKKFPNLKIPVKRYGEIDI Prediction of potential genes in microbial genomes Time: Tue May 24 03:02:42 2011 Seq name: gi|197282953|gb|ABQU01000097.1| Helicobacter pullorum MIT 98-5489 cont2.97, whole genome shotgun sequence Length of sequence - 5597 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - LSU_RRNA 587 - 3299 98.0 # AY596220 [D:1..2713] # 23S ribosomal RNA # Helicobacter canadensis MIT 98-5491 # Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter. - TRNA 3543 - 3618 92.1 # Ala TGC 0 0 - TRNA 3624 - 3700 94.1 # Ile GAT 0 0 - SSU_RRNA 3862 - 5306 99.0 # AJ876512 [D:1..1446] # 16S ribosomal RNA # Helicobacter pullorum # Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter. + Prom 5231 - 5290 80.4 1 1 Tu 1 . + CDS 5391 - 5540 57 ## Predicted protein(s) >gi|197282953|gb|ABQU01000097.1| GENE 1 5391 - 5540 57 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSLCCILIDFRNKKIFSNSFYSCLVVKDHFNFKYPTSLSNVLKDIFQIL Prediction of potential genes in microbial genomes Time: Tue May 24 03:02:47 2011 Seq name: gi|197282952|gb|ABQU01000098.1| Helicobacter pullorum MIT 98-5489 cont2.98, whole genome shotgun sequence Length of sequence - 553 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 47 - 106 1.8 1 1 Tu 1 . + CDS 185 - 551 435 ## APECO1_O1R81 hypothetical protein Predicted protein(s) >gi|197282952|gb|ABQU01000098.1| GENE 1 185 - 551 435 122 aa, chain + ## HITS:1 COG:no KEGG:APECO1_O1R81 NR:ns ## KEGG: APECO1_O1R81 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 38 88 104 154 167 89 86.0 4e-17 MGVMIPMKRERMLTIRVTDDEHARLLERCEGKQLAVWMRRDQRKITQGQCQRFVNTDVGV PQGSQQHPAMQIRNIMVQGADFRVSRLYETRKPKTIHVVAQVADVLQQQSLHVRSRIGDS FC Prediction of potential genes in microbial genomes Time: Tue May 24 03:02:50 2011 Seq name: gi|197282951|gb|ABQU01000099.1| Helicobacter pullorum MIT 98-5489 cont2.99, whole genome shotgun sequence Length of sequence - 1056 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 315 762 ## gi|227509320|ref|ZP_03939369.1| conserved hypothetical protein 2 1 Op 2 . - CDS 370 - 927 967 ## COG0477 Permeases of the major facilitator superfamily - Prom 964 - 1023 3.8 Predicted protein(s) >gi|197282951|gb|ABQU01000099.1| GENE 1 3 - 315 762 104 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509320|ref|ZP_03939369.1| ## NR: gi|227509320|ref|ZP_03939369.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 25 62 1 38 78 72 100.0 9e-12 MGAGHDYRRRTYDCLLYHATRRTGAGSALGHFRRGPLSLERDDDRPVACGIRNLARPRSS LRHWSRHQTFRREAGHYRRHGGRRAGLRLAGVRDARLDGLPHYD >gi|197282951|gb|ABQU01000099.1| GENE 2 370 - 927 967 185 aa, chain - ## HITS:1 COG:AGl1300 KEGG:ns NR:ns ## COG: AGl1300 COG0477 # Protein_GI_number: 15890776 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 155 2 153 394 133 52.0 1e-31 MKSNNALIVILGTVTLDAVGIGLVMPVLPGLLRDIVHSDSIASHYGVLLALYALMQFLCA PVLGALSDRFGRRPVLLASLLGATIDYAIMATTPVLWILYAGRIVAGITGATGAVAGAYI ADITDGEDRARHFGLMSALFRRGYGGRPRGRGTVGRHLLACTIPCGGGAQRPQPTTGLLP NAGVA Prediction of potential genes in microbial genomes Time: Tue May 24 03:02:57 2011 Seq name: gi|197282950|gb|ABQU01000100.1| Helicobacter pullorum MIT 98-5489 cont2.100, whole genome shotgun sequence Length of sequence - 2104 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 450 428 ## CCC13826_1167 hypothetical protein - Prom 493 - 552 8.9 2 2 Tu 1 . - CDS 561 - 2033 1023 ## CHAB381_0165 hypothetical protein Predicted protein(s) >gi|197282950|gb|ABQU01000100.1| GENE 1 3 - 450 428 149 aa, chain - ## HITS:1 COG:no KEGG:CCC13826_1167 NR:ns ## KEGG: CCC13826_1167 # Name: not_defined # Def: hypothetical protein # Organism: C.concisus # Pathway: not_defined # 4 148 3 152 202 69 34.0 3e-11 MKYFILILISLITLIIFASYGLIQTSSADKETVRIAEEYGGIYVFDKEIRDEIIQKEKER EEARQKVTLGDTFWEQRESIDKNLPQILSNGCKYYIKGPSKQELKENDWSLYYQKIKEYM GEEIFEKLKKGLAITSYYVDKNGKVIPIT >gi|197282950|gb|ABQU01000100.1| GENE 2 561 - 2033 1023 490 aa, chain - ## HITS:1 COG:no KEGG:CHAB381_0165 NR:ns ## KEGG: CHAB381_0165 # Name: not_defined # Def: hypothetical protein # Organism: C.hominis_BAA-381 # Pathway: not_defined # 333 473 297 429 447 73 39.0 1e-11 MEVATLHFIKNTFKKECKSFFAHLDYLSLDELKEIMKKEFKLESNNDYGILDVFSFLNKE YYFFINVFSPKILAFKKSMIDYLLKHKENIKALNMDLTINNNSFESEIFLKFTAYIKYNR EMEDYQRLYFFEECVLNMNYDRGFEGISFGEKGGKRILTINPNNKEFNIIFKETSYSQCK KFIPISTIKDFRYCYVIGYFYFQALFKDNPILRDLSKSDLKHIKVPLENFKNLTTKQALI EAILGIKVPYNLNKLPFKVGFSFAGYLALGIIVNKDTHKFYSYLLENAKSFPLLAENIPL TRGVTIKRKKYELYSLIEWYFYQKIDINSCFWVRDSINMALSIKESISLKIKSQKGTKRE HDRILEAFLSKESKNSKKLKIAPHFKALAKRLPKSFELINQEARLQKEGLVQNNCVYSYK ETINNGMIAIFSLLYENQRYTLEIGYNKRKNAKNLYTLRQIKGKNNTEASNEVKLMVDGV LTKIQFNKYY Prediction of potential genes in microbial genomes Time: Tue May 24 03:03:06 2011 Seq name: gi|197282949|gb|ABQU01000101.1| Helicobacter pullorum MIT 98-5489 cont2.101, whole genome shotgun sequence Length of sequence - 2070 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 7 - 66 3.2 1 1 Op 1 . + CDS 90 - 635 524 ## WS0086 hypothetical protein 2 1 Op 2 . + CDS 646 - 1383 909 ## WS0087 hypothetical protein + Term 1442 - 1494 -1.0 - Term 1304 - 1335 -0.5 3 2 Tu 1 . - CDS 1400 - 2068 210 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase Predicted protein(s) >gi|197282949|gb|ABQU01000101.1| GENE 1 90 - 635 524 181 aa, chain + ## HITS:1 COG:no KEGG:WS0086 NR:ns ## KEGG: WS0086 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 181 1 181 181 283 72.0 3e-75 MVTDMDLKLIKMITSHYWIKEAGIGQKIHHNGRIFYDKFKRVDEPLTRTILQSHFKKEIT VAHSLINTQDKVENIVFDYNGFNAERFWHRAQLLLREEGFINFTAYQTKTPGHLHLYVHK GHTTFQEACQLAKMLGAKLAQKMPTEWKMFPSLDIPRSFNILVVPYGVYNKERGASWSKH M >gi|197282949|gb|ABQU01000101.1| GENE 2 646 - 1383 909 245 aa, chain + ## HITS:1 COG:no KEGG:WS0087 NR:ns ## KEGG: WS0087 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 11 244 2 258 259 90 31.0 3e-17 MIDTNDNKKEEKGLELDDLLISDIQEEDEKETKSKKTILLVAIGIVIFAIIILIVYMMQS GSKNEVDTNAQTNKPVEEAQLPTMAKEEQNTDFGQVPIQSQNTSNSDEQFQKIIDQIKAQ QKEQQEALPNPPKEQVALETNQENKQNTIKSSEAKNATTTTAEDSKKQEVGIAKGFYIQV GSFSKSPNQKILQTIKELNFSHQMQKAGGATRLLIGPFATKEEAQKNLPVIKDKINKDAF IKEIK >gi|197282949|gb|ABQU01000101.1| GENE 3 1400 - 2068 210 222 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 4 216 74 284 294 85 29 3e-17 YLDFICRREQHEPIEYLTEKVSFYGEEFYISHGTLIPRPETEILIDKAKEIILQHSCKNI AEIGIGSGIISIMLSLLLQDYPLKFYASDISPESLFNAYVNLKKFKISNLKLYKSAFLDF NTQNKLSFDLLISNPPYIKNDEILPHSLSYEPSKALFGGEVGDEILHQIILLAYNAKIPH LICEMGYNQRQSIENFIHKIPHKKIEFYKDLANLDRGFIVEF Prediction of potential genes in microbial genomes Time: Tue May 24 03:03:13 2011 Seq name: gi|197282948|gb|ABQU01000102.1| Helicobacter pullorum MIT 98-5489 cont2.102, whole genome shotgun sequence Length of sequence - 1875 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 - CDS 1 - 727 603 ## COG1684 Flagellar biosynthesis pathway, component FliR 2 1 Op 2 1/0.000 - CDS 731 - 1369 243 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 3 1 Op 3 . - CDS 1385 - 1870 597 ## COG0264 Translation elongation factor Ts Predicted protein(s) >gi|197282948|gb|ABQU01000102.1| GENE 1 1 - 727 603 242 aa, chain - ## HITS:1 COG:HP0173 KEGG:ns NR:ns ## COG: HP0173 COG1684 # Protein_GI_number: 15644802 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliR # Organism: Helicobacter pylori 26695 # 1 241 2 241 255 182 50.0 6e-46 MEFLAYLTEGNVTNFLLLLLRFAGIVAFFPFFENQLINTQIKGIFIFWLTILFIPLVTTL PPTNMTILEFIIAGITEIMLGFLASFALQIVFGMISFGGELISFAMGLTIANAYDPVTGA QKPIVGQLLSLLALMIVLALDYHHLFLYFVADSIKEIPLGGFIYSNNYILYTIKAFSNLF LIGLTMSFPIIALILLSDIIFGMIMKAHPQFNLLAIGFPVKIAVAFAVLIVIIPAIIIHF KR >gi|197282948|gb|ABQU01000102.1| GENE 2 731 - 1369 243 212 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 16 197 16 204 245 98 32 4e-21 MLLEAQNISFGYEKPILNCLDFSAESGEIVSIMGVSGSGKSTLLHILSSFLKPQSGKVSL FNLDIYTLPQNEILALRRKKIGMIFQSHYLFLGFSAYENLQVASILSGEKIDESLLEMFG ISETLNKNVGSLSGGQQQRLSIARILTKKPQIIFADEPTGNLDRETAFNVMETLFSYTKS TNSLLIFVTHDPLLAKKATRAYKLENTTLNPL >gi|197282948|gb|ABQU01000102.1| GENE 3 1385 - 1870 597 161 aa, chain - ## HITS:1 COG:HP1555 KEGG:ns NR:ns ## COG: HP1555 COG0264 # Protein_GI_number: 15646162 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor Ts # Organism: Helicobacter pylori 26695 # 1 160 195 354 355 199 64.0 2e-51 MKPQVISYHSFDMDFIKSEKTAIIAELEKENEELKRLGKPLHKIPQYISQLELTDEIIAK QEEVLKADLKAQGKPEAIWDKILPGQIERFKADSTLLDQRLTLLGQFFVMDDKKTIAQVL AEKSKELNDNIEVVEYVRFELGEGIQKQECNFADEVAAQLG Prediction of potential genes in microbial genomes Time: Tue May 24 03:03:14 2011 Seq name: gi|197282947|gb|ABQU01000103.1| Helicobacter pullorum MIT 98-5489 cont2.103, whole genome shotgun sequence Length of sequence - 1843 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 9 - 806 321 ## PROTEIN SUPPORTED gi|163786851|ref|ZP_02181299.1| 50S ribosomal protein L32 + Term 886 - 919 -0.3 - Term 616 - 657 -0.9 2 2 Tu 1 . - CDS 807 - 1841 1429 ## COG0133 Tryptophan synthase beta chain Predicted protein(s) >gi|197282947|gb|ABQU01000103.1| GENE 1 9 - 806 321 265 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163786851|ref|ZP_02181299.1| 50S ribosomal protein L32 [Flavobacteriales bacterium ALC-1] # 2 265 55 333 346 128 32 4e-30 MLQKAAKLLCLKMPKDILCISPNVEIPNITPAQITPQSGAYSYASFLLAIKLTQEKNSKA LVTLPIHKKAWQLANIPYAGHTEAFRDIFKKEAIMMLGSPKLYVALFTDHIPLKKVPPKI SQESLASFLLTLAPHIHKTPCGVLGLNPHAGDFGVLGNEEKMIKNAIDYANSNFKKQIFI GPLVPDTAFIGKHLKYYVAMYHDQGLIPLKTLYFKESINLTLNLPIIRTSVDHGTAFDIA YQNKANSKSYMNAIKEAIFRAKEKY >gi|197282947|gb|ABQU01000103.1| GENE 2 807 - 1841 1429 344 aa, chain - ## HITS:1 COG:RSc1983 KEGG:ns NR:ns ## COG: RSc1983 COG0133 # Protein_GI_number: 17546702 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase beta chain # Organism: Ralstonia solanacearum # 1 341 58 400 403 390 58.0 1e-108 KHFQGRPTPIYFAHNLTKEYGGAGIYLKREDLNHTGAHKLNHCMGEALLAKFMGKKKLIA ETGAGQHGVALATAAAYFGLECEIHMGEVDIAKERPNVVRMKILGAKVVSVSAGAKTLKE AVDSAFEAYLSDPVNSIYAIGSVVGPHPFPKMVRDFQAVVGFESREQFLEMTGELPDIVA ACVGGGSNAMGIFSGFIDDAVELVGVEPLGRGSSLGEHAASLSYGSEGVMHGFNSIMLKD SSGEPAAVHSVASGLDYPSVGPEHAYLHSIGRTKVAAINDKEAINAFFELSKKEGIIPAI ESSHALAYALKIAPELKGKKILVNLSGRGDKDIDFVVEKYGYGE Prediction of potential genes in microbial genomes Time: Tue May 24 03:03:15 2011 Seq name: gi|197282946|gb|ABQU01000104.1| Helicobacter pullorum MIT 98-5489 cont2.104, whole genome shotgun sequence Length of sequence - 1769 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1769 2436 ## gi|242308808|ref|ZP_04807963.1| predicted protein Predicted protein(s) >gi|197282946|gb|ABQU01000104.1| GENE 1 2 - 1769 2436 589 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308808|ref|ZP_04807963.1| ## NR: gi|242308808|ref|ZP_04807963.1| predicted protein [Helicobacter pullorum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rediction of potential genes in microbial genomes Time: Tue May 24 03:03:45 2011 Seq name: gi|197282945|gb|ABQU01000105.1| Helicobacter pullorum MIT 98-5489 cont2.105, whole genome shotgun sequence Length of sequence - 1718 bp Number of predicted genes - 3, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 746 623 ## HH0233 hypothetical protein 2 1 Op 2 . - CDS 757 - 1554 369 ## HH0298 hypothetical protein 3 1 Op 3 . - CDS 1564 - 1716 131 ## Predicted protein(s) >gi|197282945|gb|ABQU01000105.1| GENE 1 2 - 746 623 248 aa, chain - ## HITS:1 COG:no KEGG:HH0233 NR:ns ## KEGG: HH0233 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 55 226 2 175 326 114 38.0 5e-24 MNNAYGIAVVCVPSDRLITDESGEQFYECMTQEELERIAKEKDKDTLKTYLFNALSMLDS TISTIATSIEKGLPIQVKIVFTIKDSIKGSVLNMDNEDLSVSEKIVLGGVTIGIGIISIL TLPENIIGIIASLIISYITTWFLSNFYIKLRNTTLHLWQDAKNLANSTWQNIMSLIESDE RSLEERKRDITNKVTNEILNLQETPNENFIKNISQENYNDLIHLLCQQQTNAKDIHQYLE DSKCIMCN >gi|197282945|gb|ABQU01000105.1| GENE 2 757 - 1554 369 265 aa, chain - ## HITS:1 COG:no KEGG:HH0298 NR:ns ## KEGG: HH0298 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 6 187 2 173 194 69 30.0 1e-10 MSKTNKVFDPLLFNGLGSQRDRKWNNILYSIMSFNAALSIPIGLYILNGIIEKWYYHDWF LISYVVCIFNVLIFFAIWCYLHIFMFKYARKHKHIDKSNPILVCEYQGGFKNYCVWALGF LYIFITYSIAIVLSIFAPPFIVVVLFHIFLSKPFLLKRILLFKDYVILEYRIFGNIKLSR EGLALMAIPRPLKNLAFVRPQLFAQDKYSHIMANFCTRFNPFGMNNVNALIRELDSKIGY SAYEITKNKKVFTSDIDWNCLKIYL >gi|197282945|gb|ABQU01000105.1| GENE 3 1564 - 1716 131 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no NQSTNIQKQTKQLGKESNKELKENQKGLESKNFYSKIQSFLCYDSKKRYA Prediction of potential genes in microbial genomes Time: Tue May 24 03:03:56 2011 Seq name: gi|197282944|gb|ABQU01000106.1| Helicobacter pullorum MIT 98-5489 cont2.106, whole genome shotgun sequence Length of sequence - 1568 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 4 - 246 274 ## COG3271 Predicted double-glycine peptidase + Term 261 - 310 1.6 - Term 173 - 224 7.1 2 2 Tu 1 . - CDS 315 - 1412 671 ## gi|242308805|ref|ZP_04807960.1| predicted protein - Prom 1447 - 1506 8.4 Predicted protein(s) >gi|197282944|gb|ABQU01000106.1| GENE 1 4 - 246 274 80 aa, chain + ## HITS:1 COG:Cj0058 KEGG:ns NR:ns ## COG: Cj0058 COG3271 # Protein_GI_number: 15791450 # Func_class: R General function prediction only # Function: Predicted double-glycine peptidase # Organism: Campylobacter jejuni # 1 66 115 180 199 94 57.0 4e-20 MLVRIENDPRFPHFVVIINHKGDFIQVFDPNFGQYKATKKEFYSVWDRNHTGGFALVIAK NENSKPMIKDLEFPNEAFFK >gi|197282944|gb|ABQU01000106.1| GENE 2 315 - 1412 671 365 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308805|ref|ZP_04807960.1| ## NR: gi|242308805|ref|ZP_04807960.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 365 1 365 365 585 100.0 1e-165 MASISNSFYSNYLNIYSSPNSANSTSYKEIQESNTKSTNPSNEAIQQKINDLLADYPLHH PYYLQYQDAIFYDIVAINGDSDTEFENSIMLKQYLLDNVSLPTEQTFEESKNILSQEMNN ILNNTYISKGEDSKEFQALLSFAKTFFEMDKSRIDSKQKLLNLLKQGQDNLEYATSNEFY HKLFTKTEGLSTMTLEEINTINEKQGFLSDYISDNYQVAHCLEEFFALADFYKLIPQENK DKISENLQISQRYLYNQRGDLENHFQLGDFTISWEGNSTLFNAYLNGSKISIASQSTSND FLASLTSNFDTTQSIFDILNQKEKLEKENQDLKNKQAIEAYGINAITNSYTKTQRDNLLK KIIKG Prediction of potential genes in microbial genomes Time: Tue May 24 03:04:10 2011 Seq name: gi|197282943|gb|ABQU01000107.1| Helicobacter pullorum MIT 98-5489 cont2.107, whole genome shotgun sequence Length of sequence - 1522 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1485 1526 ## JJD26997_0940 lectin C-type domain-containing protein Predicted protein(s) >gi|197282943|gb|ABQU01000107.1| GENE 1 3 - 1485 1526 494 aa, chain - ## HITS:1 COG:no KEGG:JJD26997_0940 NR:ns ## KEGG: JJD26997_0940 # Name: not_defined # Def: lectin C-type domain-containing protein # Organism: C.jejuni_doylei # Pathway: not_defined # 24 492 41 515 730 369 43.0 1e-100 MHNKIKTFLGTSLLGVLFATQAYGINCNDFTEFKSYGGHYYATTIKRMSFDTAKAFAQKN GGYLAIPETSGENDFIASIIPNGRYAWIGVYDPNYTQNHCLENKGCSYDASRFRNIKTNG AVAFSKWATRQPDNLLKNNDVINGKEVVSPLGEHWVAMAFDSGEWADFGNHAGDEIPKKE YAVIEFESQPICHSIPETDIDDTLNIVGQCNSWTSDDPNYSIDESKVMQSFTCLNDINGE LFCPIGLTECKVDTSDKVEGSSKKVEAKIYMQRQFIDISFYRNVGYEAAEFVDLKFIIND LSKIDTFKAISLGADDWVVMYKPNQFINTAYERDTQGLIYVPWNPNGNYYELSRWTSASS TALNKIEMLPYLKEGENFVRLFFRTVGTGGWGATLRLIGEGISCENNIQGSGFTCNSGDY YDHYSYYEYTCPANYTPIEQGGNCNPSSIKDLIDTNNDGVGDACPNNPSTPPALNCQAST KVCPYNKERGCVEY Prediction of potential genes in microbial genomes Time: Tue May 24 03:04:16 2011 Seq name: gi|197282942|gb|ABQU01000108.1| Helicobacter pullorum MIT 98-5489 cont2.108, whole genome shotgun sequence Length of sequence - 1514 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 74 - 133 12.3 1 1 Tu 1 . + CDS 207 - 587 529 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 2 2 Tu 1 . - CDS 592 - 1488 831 ## WS1180 hypothetical protein Predicted protein(s) >gi|197282942|gb|ABQU01000108.1| GENE 1 207 - 587 529 126 aa, chain + ## HITS:1 COG:Cj0898 KEGG:ns NR:ns ## COG: Cj0898 COG0537 # Protein_GI_number: 15792228 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Campylobacter jejuni # 2 104 5 107 121 144 63.0 3e-35 MTVFEKIIKGEIPCNKVLENEDFLAFHDIAPKAPIHVLVIPKKFAKDFQQVSPQEMVGMT NFIQECAKTLGLDKNGYRIISNIGIDGGQEIPYLHFHLLGGAKLRWDNLAQNISEQQRLE EAKKGM >gi|197282942|gb|ABQU01000108.1| GENE 2 592 - 1488 831 298 aa, chain - ## HITS:1 COG:no KEGG:WS1180 NR:ns ## KEGG: WS1180 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 1 287 155 447 460 219 43.0 1e-55 MVNAKMSPSVIDTAGKQRMLTQRMAHLFMSYANKWDSISHKELLEVYHLYDRVIFEFYNN PTYQNLPKVHQAIKETYDFWQGYKEKFQDTLRAQEKIVEDLKSIVVQNTNLLNQIDWTVN YYSDVSTHSRAYLEKFQYVAAVIMVLLALYSIKNLFNIHTHLKQFLEKTQMLAQGQIKED IAEAIELEGGSELSLASKNLSKFLNKFHMAQETSNRAKELSEDISEEIASISEEIKKKLE VVEISESKRRSIENAINLGEDMAIQSSEQLIVVARLLEKLHRILKEIQECCKDKNPSK Prediction of potential genes in microbial genomes Time: Tue May 24 03:04:21 2011 Seq name: gi|197282941|gb|ABQU01000109.1| Helicobacter pullorum MIT 98-5489 cont2.109, whole genome shotgun sequence Length of sequence - 1309 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1220 809 ## Cla_0320 putative glycosyltransferase - Prom 1240 - 1299 2.2 Predicted protein(s) >gi|197282941|gb|ABQU01000109.1| GENE 1 2 - 1220 809 406 aa, chain - ## HITS:1 COG:no KEGG:Cla_0320 NR:ns ## KEGG: Cla_0320 # Name: not_defined # Def: putative glycosyltransferase # Organism: C.lari # Pathway: not_defined # 8 355 3 350 502 127 30.0 5e-28 MKQKKQTVVLLGESHFIFNNGIQKGLIDNGVDVVNVSLGGTPALQNLYELIRKKNIIKNA DLIISGSNTHDILQYNSIDLFKISYQVINWLYKELFFLNKKIIIFLGPTPQKRCNEICIK LVNNLHRKLAIKYGFNVIDFNRYYTEKSLYDFIRRDEAHDFDFIMRELGKNIVKEINIFQ YPKKINLVNDNPRFSIIQLDEIKTISYENLSNKQNSLYSENIYILKDRLDIKNEFKNYIL LGIHIWNDTSNNNTFEIISDGCDYCILKTFNYTYMILFDIYKRNFVISDNLTIRYTNGGY TNLIGFILASPEGNYHNEEVDFHDLASEDIKIPKEYDFNHLIPNIEWYKEIIDEYCAIMN PKKHDILYNQINYLQNSIKENSTKLSQTQSKLSFQTKYGTAKTRIQ Prediction of potential genes in microbial genomes Time: Tue May 24 03:04:27 2011 Seq name: gi|197282940|gb|ABQU01000110.1| Helicobacter pullorum MIT 98-5489 cont2.110, whole genome shotgun sequence Length of sequence - 1307 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 1306 1856 ## gi|242308799|ref|ZP_04807954.1| predicted protein Predicted protein(s) >gi|197282940|gb|ABQU01000110.1| GENE 1 1 - 1306 1856 435 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308799|ref|ZP_04807954.1| ## NR: gi|242308799|ref|ZP_04807954.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 435 1 435 435 444 100.0 1e-123 FINASGASVEVLTAGSIANNLLNEGNITNLTINEKIGTLTNSGSITALAVEGTINNGIAN DNNGIINSLTIQNNSIITNGITNNSNIGSLDLQNNTTYSGTGSITNALDIAGSKTLNAST DGIKILFANNATGTIDNAGIISGNLNNQNGSTIKTFNTGSISGSIANNATIQELNVTGNV TNGITNNSNIAKLNVSSNVSYSGDNGNISQELVINQGSGQTTTFTIQGTNQTLILGGTGN GGVKTITNEGTIIGNLTNTLTTDWTFGVLQGNFTNNGELTALTDTTTGSITGNLTNGNNG IINTLNTSKVGGSIANNGNLVNLIVDADKTITGSGSITNSLVVQDNSGNGYTLTIGNNGA GNLNFKATNGTINNAGTIAGNITNVDGSTIADFTNSGSFNGALTNNGSITNFENQLGGNF TGNITNTAGDTISNF Prediction of potential genes in microbial genomes Time: Tue May 24 03:04:48 2011 Seq name: gi|197282939|gb|ABQU01000111.1| Helicobacter pullorum MIT 98-5489 cont2.111, whole genome shotgun sequence Length of sequence - 1306 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 323 269 ## Suden_0188 radical SAM family protein 2 1 Op 2 . - CDS 320 - 1306 686 ## WS2197 hypothetical protein Predicted protein(s) >gi|197282939|gb|ABQU01000111.1| GENE 1 2 - 323 269 107 aa, chain - ## HITS:1 COG:no KEGG:Suden_0188 NR:ns ## KEGG: Suden_0188 # Name: not_defined # Def: radical SAM family protein # Organism: T.denitrificans_ATCC33889 # Pathway: not_defined # 3 107 5 109 279 117 47.0 1e-25 MRIECFPSRIVLELTPLCNLSCFMCPRHYINEADGYMQENLFKKMIDEIVCENPEAIILP FWRGESCLHPNFNMLMTYAINQGLKIHLSTNGHYVEEQHKSIFYRCE >gi|197282939|gb|ABQU01000111.1| GENE 2 320 - 1306 686 328 aa, chain - ## HITS:1 COG:no KEGG:WS2197 NR:ns ## KEGG: WS2197 # Name: not_defined # Def: hypothetical protein # Organism: W.succinogenes # Pathway: not_defined # 2 116 470 582 692 165 68.0 3e-39 DNPPRDPKLIEAEKAKYPITKDTVVLGVIGRLVKVDSDEYLECIAEVMKKHSNTIFIAAG SGNMPVIRKKVEKLGISERFFMPGFVDPHIYGYIIDIFCDTFPMGQGESLSEFMHKGRCY IYIPNDEYYQTFLSADFSQELLGLKYSKEVLIYISNLEQYQKGLKNWKKILEEKDVVLLV KEEFRENLKNIDIGNCRIVFVSNDINVSILADITFEIKSNGLFMVGANTQLIEKETLRFL RFYQDQKVYNYIYSKFMIANKNIFEENGVVIGFYMHARNADGYISCLSRLINNKNLRDKI GNGMRLLMPELYNVRRQLLLEDMRGILE Prediction of potential genes in microbial genomes Time: Tue May 24 03:04:55 2011 Seq name: gi|197282938|gb|ABQU01000112.1| Helicobacter pullorum MIT 98-5489 cont2.112, whole genome shotgun sequence Length of sequence - 1227 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 728 726 ## CJE1133 hypothetical protein 2 1 Op 2 . - CDS 735 - 1217 106 ## Predicted protein(s) >gi|197282938|gb|ABQU01000112.1| GENE 1 2 - 728 726 242 aa, chain - ## HITS:1 COG:no KEGG:CJE1133 NR:ns ## KEGG: CJE1133 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_RM1221 # Pathway: not_defined # 1 242 1 257 349 278 59.0 9e-74 MQYYVTIYIDILFEKELLKLDATHAFLGLTHTHPDELDKIDNEIKMQKVKNADWKDIDKR WYESLETNEYNDGFWGFGTGTDSVYNTAGKVFQNNQYVVDNNVKTNTYKIKKLRSERTFK NRCTLEVSKEQYEFLLDEIKKDFEATKDIRPQSLEPINEEFTYSIHSNNCVHWVIKKLLD IGIEIIDEDYTIPGNFIDCFSSIMSIHSIFLKFQSIDDNLKSITGAKAFRDWARSMTDNN YI >gi|197282938|gb|ABQU01000112.1| GENE 2 735 - 1217 106 160 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNLPIYSNLKAKLESKGLDSITSGQIAWLCSASFYSFIPVLIFTVYFCFEVWPSIDYWYI FFSVFFIAFFPTLFLLLSLHSNYIKINLVYLALFFLCSAIKDYPNISAIFTYSSIVFPFI WFFATKISLSIRFLFCFIYFLFMIVGFFVFGFYNNLFLFR Prediction of potential genes in microbial genomes Time: Tue May 24 03:05:06 2011 Seq name: gi|197282937|gb|ABQU01000113.1| Helicobacter pullorum MIT 98-5489 cont2.113, whole genome shotgun sequence Length of sequence - 1143 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1142 1531 ## gi|242308795|ref|ZP_04807950.1| predicted protein Predicted protein(s) >gi|197282937|gb|ABQU01000113.1| GENE 1 2 - 1142 1531 380 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308795|ref|ZP_04807950.1| ## NR: gi|242308795|ref|ZP_04807950.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 380 1 380 381 448 99.0 1e-124 ITNFANSGTITGDLYNDGHIDTLSNTGTMGTIYNTSKNTIKNLINNTNSVIAGIDNSNGR YDLIQNQGTILGDIKNNNGTITKLFNANSGTITGQIISNGNSNIGTIINEGVINSSHTMN DSDIQNASNDAISLNTITNVVTAISNSGSINGNVRVAGNSEVDLIQNSSTIAGCIILEGG RIGNINNTNGAIANCMSFSSGANVDNITNEGTIKESITNDSGSITINNGGSIGGITTSNG GTTTAINSGSIGGITTSNGGNTTIINGGMDKPGGNIGAITNTGSNSNTHIDGWTLDNPDN PNNPIIIADGSNKDGIHLKEDSIFVEGNLESGKIYDYYGYIKDENGNSIGQDFSQDDELF DALTFIPIFNPTDNGDGTFS Prediction of potential genes in microbial genomes Time: Tue May 24 03:05:28 2011 Seq name: gi|197282936|gb|ABQU01000114.1| Helicobacter pullorum MIT 98-5489 cont2.114, whole genome shotgun sequence Length of sequence - 1135 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1134 1130 ## COG3210 Large exoproteins involved in heme utilization or adhesion Predicted protein(s) >gi|197282936|gb|ABQU01000114.1| GENE 1 3 - 1134 1130 377 aa, chain - ## HITS:1 COG:Cj0737 KEGG:ns NR:ns ## COG: Cj0737 COG3210 # Protein_GI_number: 15792086 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Large exoproteins involved in heme utilization or adhesion # Organism: Campylobacter jejuni # 25 377 3 318 358 135 34.0 1e-31 NTKNSKPQKLTKNPKKIQESQKDSKTISKIGISIIASVLLSQNLAALPAGGKFIHGSGSI SIKNDNKNGNKMTITGNNKNHVIAWGGGFNINNGETVEFAKGGKAFLNLDYSNKASKILG NLNGNDNNIYLVNPSGVLIGKGVNVNANRFVASTTSLDKALQDFTNNASDDKNVANFSPV FSRNLQGNIVNMGNIKANYITLVGNEVRNLASQNENDINGTRGTFTPKDSNINSKVHLIG KKIFLDADGAVNMKNIEVTGFNPLDGNTNPDITVQMAMSTFASKKHNIDNWIQQTYTTNG IDRGNGSMYVHNIITIGVEEGWNNFANAWNSGLGITRQIEEFKLIGNLNFENKDFVSVGT AVNSGFNKIFNGNGYKM Prediction of potential genes in microbial genomes Time: Tue May 24 03:05:29 2011 Seq name: gi|197282935|gb|ABQU01000115.1| Helicobacter pullorum MIT 98-5489 cont2.115, whole genome shotgun sequence Length of sequence - 1056 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 + CDS 55 - 354 361 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 2 1 Op 2 . + CDS 339 - 1034 358 ## COG1878 Predicted metal-dependent hydrolase Predicted protein(s) >gi|197282935|gb|ABQU01000115.1| GENE 1 55 - 354 361 99 aa, chain + ## HITS:1 COG:Cj1434c KEGG:ns NR:ns ## COG: Cj1434c COG0463 # Protein_GI_number: 15792752 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Campylobacter jejuni # 1 92 344 435 445 61 39.0 3e-10 MIVNSKSLLGYIRMPFVLSYIKDKHKQEQKNYQEKIKKDPSLALPPLEDYPDYKEALKEK ECLTYKLGQALIQANKTWYKGGYVRLWFEIRRMARWEKK >gi|197282935|gb|ABQU01000115.1| GENE 2 339 - 1034 358 231 aa, chain + ## HITS:1 COG:TM0008 KEGG:ns NR:ns ## COG: TM0008 COG1878 # Protein_GI_number: 15642783 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Thermotoga maritima # 9 228 3 224 224 93 31.0 3e-19 MGKEVKYILDLTHTISERIRLYKDNTIDLSYSKKAEKDKIVRETNIEFNSHVGTHIDYPA HCMENGKYGNEYSLHYLFSKKVFLIDVDLKNEQFPRITKHFISNILIPKNVEILVIKTHF SDIRDSNRYIWSSPIIDSEIPLYLKEQFPLLKAVCFDVISVTSQLDREEGKKCHINFLSQ ECGREILIIEDANLNNLQKNDIIKRIFVLPLKFENMDGSPCSIVAEIERKG Prediction of potential genes in microbial genomes Time: Tue May 24 03:05:29 2011 Seq name: gi|197282934|gb|ABQU01000116.1| Helicobacter pullorum MIT 98-5489 cont2.116, whole genome shotgun sequence Length of sequence - 1018 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1016 882 ## gi|242308791|ref|ZP_04807946.1| predicted protein Predicted protein(s) >gi|197282934|gb|ABQU01000116.1| GENE 1 2 - 1016 882 338 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308791|ref|ZP_04807946.1| ## NR: gi|242308791|ref|ZP_04807946.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 338 1 338 339 510 100.0 1e-143 LESNLKLDSKTLQEPCKIKELNKAKSLIRTIPISIALASALTSHAVAAWKFGSPTSGSSI RDFSAYGTLVNGNQDMLVDNIKKSFRNDGQLANFLYGITQGNSGGNLTINDNSSIEFYVL NGPMIKLEGSTTAGTITNSGTLIRERLSGIGNYRVFFDLGTNTTAKAFINNGTIYWEGTH AIALWSGSNIGTIRNTGTIQSEGAVINSGNNATIGSIEFDGGLIQRITSAGSIGNAVATT GDVINLANANIGTITMSNSASIHGNISLSGTRITDKISFGDSNMTGNISLGGSRIANGFS IDNSKITGNITLANQSTIANGLSLSGNSTITNLNLTER Prediction of potential genes in microbial genomes Time: Tue May 24 03:05:43 2011 Seq name: gi|197282933|gb|ABQU01000117.1| Helicobacter pullorum MIT 98-5489 cont2.117, whole genome shotgun sequence Length of sequence - 942 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 894 787 ## COG2896 Molybdenum cofactor biosynthesis enzyme Predicted protein(s) >gi|197282933|gb|ABQU01000117.1| GENE 1 3 - 894 787 297 aa, chain - ## HITS:1 COG:MJ0824 KEGG:ns NR:ns ## COG: MJ0824 COG2896 # Protein_GI_number: 15669011 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Methanococcus jannaschii # 32 131 43 145 298 61 37.0 2e-09 MCPLHSEEAKSKEQATDYFAKKKLLETDKVYEVLDFVGKYSINAGVGFIASGEPLLDNRL IDFIAYAKSKKIPIISVCTNGTLIEQKGEELFKAGLNRMTISIDGATQETYRKIRGTDLE KVERGVRKCVEYARAINANGGDIEMQLNCVLVNEEVIHEEKLYLEKWKEYRDIIKNIYFT DLVISDTKGRRNKRDACFNKTYEACSYPWLGFQVDVYGNVSVCCTMQDSSLREKLISIGN VYNQKVYDIWNSEAMRELRKENLRQQYSKFEICKKCVERYRAYVDDEGYLNNLVTQA Prediction of potential genes in microbial genomes Time: Tue May 24 03:05:44 2011 Seq name: gi|197282932|gb|ABQU01000118.1| Helicobacter pullorum MIT 98-5489 cont2.118, whole genome shotgun sequence Length of sequence - 870 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 335 288 ## HH0256 hypothetical protein 2 1 Op 2 . - CDS 328 - 870 390 ## HH0257 hypothetical protein Predicted protein(s) >gi|197282932|gb|ABQU01000118.1| GENE 1 2 - 335 288 111 aa, chain - ## HITS:1 COG:no KEGG:HH0256 NR:ns ## KEGG: HH0256 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 12 111 14 104 518 80 48.0 2e-14 MSKDNSLTIENIFAYENEYIDCKVLESKGIDSINSKLYFMGVELTGGDETKEPYQECFFG ELDSKDTIGLGLDTLKPIYYLTGKMTYDIEESKDIFSQTLKVFYKNHTLTI >gi|197282932|gb|ABQU01000118.1| GENE 2 328 - 870 390 180 aa, chain - ## HITS:1 COG:no KEGG:HH0257 NR:ns ## KEGG: HH0257 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 33 180 296 445 445 165 59.0 8e-40 DVDESTLEKEVQVFCKREVENQRYYESIKKFYKTQAQLKSVYEKLGTLLDKLLQKIDDEN VQGDFELIYFDKQDKKIKILKAQNNYEPMEIAEFDLTIPANNYIASKFYPFIFIPKDTIA ERILYHEYDYGKVSQGYQKDRNEFYYNILAGIQSDKYWSSSYHKLTKAYKQFQAKGVENV Prediction of potential genes in microbial genomes Time: Tue May 24 03:05:50 2011 Seq name: gi|197282931|gb|ABQU01000119.1| Helicobacter pullorum MIT 98-5489 cont2.119, whole genome shotgun sequence Length of sequence - 868 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 868 1200 ## gi|242308787|ref|ZP_04807942.1| predicted protein Predicted protein(s) >gi|197282931|gb|ABQU01000119.1| GENE 1 1 - 868 1200 289 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308787|ref|ZP_04807942.1| ## NR: gi|242308787|ref|ZP_04807942.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 2 289 2 289 289 323 100.0 1e-86 ALTAGSGITFSSANGTINNAGTINGNITNIADSILTDFTNSGSIGGTFTNKGHIVKFVNE STGSINNFVNDNTISFFENNGTITNFDGDGIIYGVINSKTITNSFENVATSLWNKENALI QGDVALKGDYKDCSNSGGTICKTSDLINEGTITGNVTNDTGKEINSVKNTGTIGGSIANS GNINTFEVSGTIAHGIINKDNASISSITINEGANLGNSGITNNSNIGTLKVYESVKYTGN GSDRITQDLEVAQNKTLTVGSNGTLSFNSKNGSVNNLGTIAGNLSNVSN Prediction of potential genes in microbial genomes Time: Tue May 24 03:06:02 2011 Seq name: gi|197282930|gb|ABQU01000120.1| Helicobacter pullorum MIT 98-5489 cont2.120, whole genome shotgun sequence Length of sequence - 843 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 842 1100 ## gi|242308786|ref|ZP_04807941.1| predicted protein Predicted protein(s) >gi|197282930|gb|ABQU01000120.1| GENE 1 2 - 842 1100 280 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308786|ref|ZP_04807941.1| ## NR: gi|242308786|ref|ZP_04807941.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 258 1 258 258 252 93.0 1e-65 NLGNITGNITNEGIITDFNNSGNINGTLTNASNANIGDFTNSGSIKEFNNEGLIAFYENS GTIGSFNNTGTIYGVLNSKVINGNFENVANALKNTGTISGNVELVGQRGTCNNSTICQLS GLWNEGTIGGTFTNVANKTIDSVINGSNSQTNISAVLNNGIANSGTINQILNYSNGTINN GITNNANANIESITNQGTINGGITNSSQIGMIDNKGLITGNLTNNTDSIITTINTGSITG SITNSGEITTLNVTGNVTNGITNNSNITNLTINKGVNLGN Prediction of potential genes in microbial genomes Time: Tue May 24 03:06:15 2011 Seq name: gi|197282929|gb|ABQU01000121.1| Helicobacter pullorum MIT 98-5489 cont2.121, whole genome shotgun sequence Length of sequence - 815 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 813 1209 ## Predicted protein(s) >gi|197282929|gb|ABQU01000121.1| GENE 1 3 - 813 1209 270 aa, chain - ## HITS:0 COG:no KEGG:no NR:no IKDSTGNNTGTIELKSDSATLEDGSTLNLANGSTLVGHLKNSGNLGSWTNYSNIQGHFIN TGTIDELDAGNIQEYLENTGVIHILKQGKIAGTLSNTGTIGELNTSVINYIANGNANTAT IAGEGHYGILNIDKNTIMDNNNTITNALNVDKNNSGNGYTLTINNGGSGGNGTIYINFDT DAQVGTINNLGTILGNIDNQTSSIIKTFNTGSISGSIINNANATIETLNVTGNVTNGITN NSNIGSLIVNENVSYSGSGSISNALEVAEG Prediction of potential genes in microbial genomes Time: Tue May 24 03:06:28 2011 Seq name: gi|197282928|gb|ABQU01000122.1| Helicobacter pullorum MIT 98-5489 cont2.122, whole genome shotgun sequence Length of sequence - 804 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 802 1071 ## Predicted protein(s) >gi|197282928|gb|ABQU01000122.1| GENE 1 1 - 802 1071 267 aa, chain - ## HITS:0 COG:no KEGG:no NR:no IKNTSNNTGTIELKSDSLKLEEGSTLNLANGSTLVGHLKNSGNLGDWTNESNIQGHFINE GTIGELNAGNIAEYLQNSGVIKILKQGKIAGTLNNTGTIGELNTSVINYTNANTATIAGA GHYGILNIDKNTIMDNNNTITNALKVDKNNSGNGYTLTINNGGSGGNGTIYINFDTDAQV GTINNLGTILGNIDNQTSSIIKTFNTGSISGSIINNNIIQELNVTGNVANGIRNDSNIGS LIVNENVSYSGNGSDRITQALIVEKDK Prediction of potential genes in microbial genomes Time: Tue May 24 03:06:39 2011 Seq name: gi|197282927|gb|ABQU01000123.1| Helicobacter pullorum MIT 98-5489 cont2.123, whole genome shotgun sequence Length of sequence - 777 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 776 988 ## gi|242308786|ref|ZP_04807941.1| predicted protein Predicted protein(s) >gi|197282927|gb|ABQU01000123.1| GENE 1 2 - 776 988 258 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308786|ref|ZP_04807941.1| ## NR: gi|242308786|ref|ZP_04807941.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 258 1 258 258 269 100.0 1e-70 NQGNITGNITNEGIITDFNNSGNINGTLTNASNANIGDFTNSGSIKEFNNEGLIAFFANN GTITTFSGNGTIYGVLNEKVINGNFENVANALKNTGTISGNVELVGQRGTCNNSTICQLS GLWNEGTITGTFTNAADKTIDSVINGSNSQTNISAVLNNGIANSGTINQILNYSNGTINN GITNNANANIESITNQGTINGGITNSSQIGMIDNTGLITGDLTNKTDSIITTINTGSITG SITNSGEITTLNVTGNVT Prediction of potential genes in microbial genomes Time: Tue May 24 03:06:51 2011 Seq name: gi|197282926|gb|ABQU01000124.1| Helicobacter pullorum MIT 98-5489 cont2.124, whole genome shotgun sequence Length of sequence - 700 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 10 - 700 697 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase Predicted protein(s) >gi|197282926|gb|ABQU01000124.1| GENE 1 10 - 700 697 230 aa, chain + ## HITS:1 COG:jhp1387 KEGG:ns NR:ns ## COG: jhp1387 COG0769 # Protein_GI_number: 15612452 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Helicobacter pylori J99 # 1 230 141 377 447 258 56.0 5e-69 MEVSSHAIVQNRIEGLEFALRILTNITSDHLDYHKTLENYIATKNSFFATPKDEKLINKD EKNAQYSLQNTMTYGIESNATFHIKAYSLKGGITAQIAYGKEEAMLNAYLFGKHNLYNAL AAIGAVKILTKSPLQMIADKLENFGGVLGRMQVVNEKPLIIVDFAHTQDGMEQVFQSFLH QKIVVIFGAGGDRDKTKRPKMGYCASKYASKIYITSDNPRSENPKMIMQE Prediction of potential genes in microbial genomes Time: Tue May 24 03:06:52 2011 Seq name: gi|197282925|gb|ABQU01000125.1| Helicobacter pullorum MIT 98-5489 cont2.125, whole genome shotgun sequence Length of sequence - 688 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 687 527 ## CJE1135 hypothetical protein Predicted protein(s) >gi|197282925|gb|ABQU01000125.1| GENE 1 3 - 687 527 228 aa, chain - ## HITS:1 COG:no KEGG:CJE1135 NR:ns ## KEGG: CJE1135 # Name: not_defined # Def: hypothetical protein # Organism: C.jejuni_RM1221 # Pathway: not_defined # 1 222 108 322 622 209 55.0 7e-53 IKLECTSKESQKLLSNALSLKEKEYQSKTIQAQQSIATLHSLLENQEVKCIHGGKVILKS NKGKTFKSDGIPLILESDLLGSKISGCPRSVGGVSDPCTQVVNVKASLSQKKINGEYAIL QELIGGCLSDKGFPLEVSFVPSKIKFDHSYDPKIGLTKQSLTTSQSFNLPILRLYYKEHN YQIDNTLIQRYTLNNTLYELKEESNPQFFKEVIFEEKDLMDLSKNIEN Prediction of potential genes in microbial genomes Time: Tue May 24 03:06:55 2011 Seq name: gi|197282924|gb|ABQU01000126.1| Helicobacter pullorum MIT 98-5489 cont2.126, whole genome shotgun sequence Length of sequence - 683 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 682 627 ## COG3210 Large exoproteins involved in heme utilization or adhesion Predicted protein(s) >gi|197282924|gb|ABQU01000126.1| GENE 1 1 - 682 627 227 aa, chain - ## HITS:1 COG:Cj0737 KEGG:ns NR:ns ## COG: Cj0737 COG3210 # Protein_GI_number: 15792086 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Large exoproteins involved in heme utilization or adhesion # Organism: Campylobacter jejuni # 66 226 14 168 358 106 49.0 3e-23 TTSNTLKNSNPKELSKNLNKIQSSNLSKESNSKIQDSIKLESIKDSNSIQSKQSKTTITK IGISIVASIVLSQSLVALPSGGKFVGESSGSIKVKNDKVMNITGNNTNHVIAWGGGFNIN EGEIVEFNTSHKQQASFLNLDYSNQASKILGKLNGNNHNIYLVNPSGVLIGENASINANK FVASNTIDETTLNNFKTQTKLVETFSPVFKPNKGNIVNLGTIKANNG Prediction of potential genes in microbial genomes Time: Tue May 24 03:06:56 2011 Seq name: gi|197282923|gb|ABQU01000127.1| Helicobacter pullorum MIT 98-5489 cont2.127, whole genome shotgun sequence Length of sequence - 658 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 656 527 ## Bmur_1425 hypothetical protein Predicted protein(s) >gi|197282923|gb|ABQU01000127.1| GENE 1 2 - 656 527 218 aa, chain - ## HITS:1 COG:no KEGG:Bmur_1425 NR:ns ## KEGG: Bmur_1425 # Name: not_defined # Def: hypothetical protein # Organism: B.murdochii # Pathway: not_defined # 2 217 221 444 499 223 51.0 4e-57 AKYNKAFKRNDEDRYSKYLQDVQEGKAKINTQVLTPFDIIRKIQVENNEVEALNTMWNNL PNLFGEDSIDAIVACDVSGSMSGNPICISIGLAIYIAQRNKGRFHNHFIDFCGDSRLHEL PDNASIKELYDLVISSSRDMNTNIESVMVNAILETLIKNKIPKEECPKYVIIISDMEFDM CGKGKKTNIEYWKKKYQVRGYDMPTVIFWNVDDRNNIF Prediction of potential genes in microbial genomes Time: Tue May 24 03:07:00 2011 Seq name: gi|197282922|gb|ABQU01000128.1| Helicobacter pullorum MIT 98-5489 cont2.128, whole genome shotgun sequence Length of sequence - 630 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 12 - 218 256 ## gi|242308780|ref|ZP_04807935.1| predicted protein 2 1 Op 2 . + CDS 203 - 629 370 ## HH0259 hypothetical protein Predicted protein(s) >gi|197282922|gb|ABQU01000128.1| GENE 1 12 - 218 256 68 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308780|ref|ZP_04807935.1| ## NR: gi|242308780|ref|ZP_04807935.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 68 1 68 68 77 100.0 3e-13 MNLREQREQDYKEEQERISQLSYEEYQREREKTLREQQRQERIQRARNPNTTNHLILKLK TKIMWLSF >gi|197282922|gb|ABQU01000128.1| GENE 2 203 - 629 370 142 aa, chain + ## HITS:1 COG:no KEGG:HH0259 NR:ns ## KEGG: HH0259 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 66 142 17 92 227 63 53.0 3e-09 MVIFLDSDISLSNLIHIHNNKIDIFTKDGTILDIQRLETLLQEYININHNTDNNTNNNDN NTAITLDLLNSPNTQIFLYSQLLLGGSESPISSQEYFFGLLDSKNSDTLLDTLKPIYYFA PKDESSGLGKLSIFYHSSTLTL Prediction of potential genes in microbial genomes Time: Tue May 24 03:07:07 2011 Seq name: gi|197282921|gb|ABQU01000129.1| Helicobacter pullorum MIT 98-5489 cont2.129, whole genome shotgun sequence Length of sequence - 623 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 408 377 ## gi|224417964|ref|ZP_03655970.1| putative molybdopterin cofactor synthesis protein A 2 1 Op 2 . - CDS 411 - 605 259 ## gi|242308779|ref|ZP_04807934.1| predicted protein Predicted protein(s) >gi|197282921|gb|ABQU01000129.1| GENE 1 3 - 408 377 135 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224417964|ref|ZP_03655970.1| ## NR: gi|224417964|ref|ZP_03655970.1| putative molybdopterin cofactor synthesis protein A [Helicobacter canadensis MIT 98-5491] # 1 133 8 140 460 209 72.0 6e-53 MSFNYPLLEKRDKDFAREFYQIAKESNTNLYYYPKPNHYMEVDDFALFSLKSNLTPENLK IESLYRKDLIPRDLRGKLHTLLRKDKGIEEKYIQKKFFYESRKLFNLSWQWNEFQVSQEQ LEYDLIDRVQEWYAG >gi|197282921|gb|ABQU01000129.1| GENE 2 411 - 605 259 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242308779|ref|ZP_04807934.1| ## NR: gi|242308779|ref|ZP_04807934.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 64 1 64 64 104 100.0 2e-21 MQIFILNFSKTRVDNVAQALELSSLNEEDVFKEYKIQNFFEDSLYKILKEVEFINSNSIG GGGQ Prediction of potential genes in microbial genomes Time: Tue May 24 03:07:19 2011 Seq name: gi|197282920|gb|ABQU01000130.1| Helicobacter pullorum MIT 98-5489 cont2.130, whole genome shotgun sequence Length of sequence - 556 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 554 658 ## gi|242308778|ref|ZP_04807933.1| predicted protein Predicted protein(s) >gi|197282920|gb|ABQU01000130.1| GENE 1 2 - 554 658 184 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242308778|ref|ZP_04807933.1| ## NR: gi|242308778|ref|ZP_04807933.1| predicted protein [Helicobacter pullorum MIT 98-5489] # 1 184 1 184 185 281 100.0 2e-74 GITTSNGGTTNISNGGFQNSGGNIGLITNTGSNSTTNIIEWNVGNPDNPKSPIKVAGDNL GGINTGTIYVDITPGKVYDVEQIVVGKDINGDGIEDGVDSNGDSLADQLNNGQGIFDSLH HASDIITIIDEGGGEFSAGVDTQELSGKTLGASLIYSSRMRQINTNSMLREINVKNFKTD FEIL Prediction of potential genes in microbial genomes Time: Tue May 24 03:07:29 2011 Seq name: gi|197282919|gb|ABQU01000131.1| Helicobacter pullorum MIT 98-5489 cont2.0, whole genome shotgun sequence Length of sequence - 1027 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 1027 1169 ## gi|242310438|ref|ZP_04809593.1| filamentous hemagglutinin domain-containing protein Predicted protein(s) >gi|197282919|gb|ABQU01000131.1| GENE 1 1 - 1027 1169 342 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242310438|ref|ZP_04809593.1| ## NR: gi|242310438|ref|ZP_04809593.1| filamentous hemagglutinin domain-containing protein [Helicobacter pullorum MIT 98-5489] # 83 342 741 973 973 120 36.0 2e-25 DFISLDSTIKEIIHEILNENYGINIALDKNGYISQETLDKLINISNTIDEILKGIESKES EATLDTKIHKLFELILVDSNPNTAELESLKQSLNFLRAFYDGDNGLKDDFAKWYSKDNSI DKYSYVKDSILKLKSFINGEGSYNGNGLINQISSINNNLKALESLKQRIKAAQKYYQEAL EAKLPYETLEGIYNGMVKTINESYIQALGVLETLKGEDKDYLTRLYKEYSIKEDSGFDDI RGTFSFSGNDILSKINSIILEDKPALTPPTKEEVGDDPTKENNPNIPNNLQKIADLASKE AILILPAQEKQEAIVEDGKERGRLCIVSDNAKTNNPCMAITY