Prediction of potential genes in microbial genomes Time: Tue Jul 12 08:09:25 2011 Seq name: gi|238617817|gb|GG669604.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD1, whole genome shotgun sequence Length of sequence - 1433332 bp Number of predicted genes - 1321, with homology - 1285 Number of transcription units - 840, operones - 306 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 48 - 107 5.6 1 1 Tu 1 . + CDS 335 - 1513 728 ## COG0183 Acetyl-CoA acetyltransferase - Term 1527 - 1574 10.8 2 2 Tu 1 . - CDS 1601 - 3172 870 ## Lbuc_2178 hypothetical protein - Prom 3263 - 3322 8.8 + Prom 3216 - 3275 7.6 3 3 Tu 1 . + CDS 3300 - 3515 292 ## gi|227507842|ref|ZP_03937891.1| conserved hypothetical protein + Term 3526 - 3577 1.0 + Prom 3565 - 3624 5.4 4 4 Op 1 . + CDS 3682 - 4215 664 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 5 4 Op 2 . + CDS 4278 - 4469 252 ## Lbuc_2181 hypothetical protein + Term 4485 - 4522 5.1 - Term 4590 - 4648 10.0 6 5 Tu 1 . - CDS 4684 - 5829 1060 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases - Prom 5849 - 5908 3.9 - Term 6201 - 6258 12.4 7 6 Op 1 . - CDS 6294 - 6854 441 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 6879 - 6938 5.7 8 6 Op 2 8/0.020 - CDS 6948 - 10712 2844 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 9 6 Op 3 . - CDS 10712 - 14257 2265 ## COG3857 ATP-dependent nuclease, subunit B - Prom 14284 - 14343 6.3 + Prom 14243 - 14302 5.1 10 7 Tu 1 . + CDS 14407 - 14628 113 ## + Term 14676 - 14728 10.4 - Term 14662 - 14716 7.0 11 8 Op 1 . - CDS 14760 - 15134 413 ## Lbuc_2185 hypothetical protein 12 8 Op 2 . - CDS 15183 - 15749 261 ## Lbuc_2186 hypothetical protein - Prom 15794 - 15853 5.0 + Prom 15730 - 15789 10.8 13 9 Tu 1 . + CDS 15836 - 16783 939 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) + Term 16820 - 16877 10.0 - Term 17178 - 17236 -0.4 14 10 Tu 1 . - CDS 17414 - 17644 205 ## COG1733 Predicted transcriptional regulators - Prom 17705 - 17764 80.4 15 11 Tu 1 1/0.178 + CDS 18962 - 19123 84 ## COG0693 Putative intracellular protease/amidase + Prom 19291 - 19350 11.2 16 12 Op 1 . + CDS 19396 - 20706 1367 ## COG2252 Permeases + Prom 20720 - 20779 5.8 17 12 Op 2 . + CDS 20819 - 21337 537 ## COG4708 Predicted membrane protein + Term 21384 - 21430 6.2 + Prom 21353 - 21412 4.2 18 13 Tu 1 . + CDS 21446 - 21670 272 ## gi|227507858|ref|ZP_03937907.1| hypothetical protein HMPREF0496_0021 + Term 21905 - 21948 3.4 + Prom 21672 - 21731 7.8 19 14 Op 1 . + CDS 21966 - 23240 1208 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 20 14 Op 2 . + CDS 23263 - 23640 296 ## PROTEIN SUPPORTED gi|160886338|ref|ZP_02067341.1| hypothetical protein BACOVA_04348 + Prom 23652 - 23711 5.1 21 14 Op 3 . + CDS 23735 - 24853 1018 ## COG0371 Glycerol dehydrogenase and related enzymes 22 15 Tu 1 . - CDS 24971 - 25180 273 ## gi|227507862|ref|ZP_03937911.1| hypothetical protein HMPREF0496_0025 - Prom 25221 - 25280 5.6 + Prom 25586 - 25645 5.8 23 16 Tu 1 . + CDS 25749 - 27071 1426 ## COG0477 Permeases of the major facilitator superfamily + Term 27086 - 27123 4.5 24 17 Tu 1 . - CDS 27504 - 28964 1127 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes - Prom 29065 - 29124 7.1 + Prom 28951 - 29010 7.0 25 18 Op 1 . + CDS 29098 - 29247 66 ## gi|227507866|ref|ZP_03937915.1| hypothetical protein HMPREF0496_0029 26 18 Op 2 . + CDS 29358 - 29906 360 ## COG1309 Transcriptional regulator + Term 29911 - 29959 10.5 - Term 29900 - 29944 6.5 27 19 Op 1 3/0.051 - CDS 29967 - 30716 256 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 28 19 Op 2 . - CDS 30769 - 31611 783 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 31659 - 31718 3.2 29 20 Tu 1 . - CDS 31834 - 32547 440 ## COG0657 Esterase/lipase 30 21 Tu 1 . - CDS 32881 - 33882 906 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 33933 - 33992 7.2 + Prom 33948 - 34007 8.0 31 22 Tu 1 . + CDS 34057 - 34605 393 ## COG1309 Transcriptional regulator + Term 34689 - 34745 8.4 - Term 34684 - 34726 6.2 32 23 Tu 1 . - CDS 34758 - 36581 1413 ## SCAB_77441 hypothetical protein - Prom 36615 - 36674 2.0 - Term 36622 - 36662 2.6 33 24 Op 1 . - CDS 36733 - 38058 1293 ## COG0477 Permeases of the major facilitator superfamily 34 24 Op 2 . - CDS 38075 - 40144 1793 ## COG1874 Beta-galactosidase - Prom 40271 - 40330 7.0 + Prom 40230 - 40289 7.5 35 25 Tu 1 . + CDS 40333 - 41214 581 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 41285 - 41341 14.6 + Prom 41341 - 41400 5.3 36 26 Op 1 . + CDS 41479 - 42102 427 ## LVIS_2019 transcriptional regulator 37 26 Op 2 . + CDS 42086 - 43660 1575 ## COG0477 Permeases of the major facilitator superfamily + Term 43675 - 43713 1.6 + Prom 43766 - 43825 2.6 38 26 Op 3 . + CDS 43856 - 44773 976 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases + Term 44786 - 44857 25.3 + Prom 45244 - 45303 3.6 39 27 Tu 1 . + CDS 45327 - 46178 586 ## Lbuc_0017 hypothetical protein - Term 46253 - 46289 -1.0 40 28 Tu 1 . - CDS 46311 - 46616 113 ## gi|227510931|ref|ZP_03940980.1| hypothetical protein HMPREF0497_0053 - Prom 46666 - 46725 4.3 41 29 Tu 1 . - CDS 46835 - 47026 182 ## gi|227507883|ref|ZP_03937932.1| hypothetical protein HMPREF0496_0046 - Prom 47209 - 47268 4.8 - Term 47245 - 47294 -0.3 42 30 Op 1 . - CDS 47306 - 47650 79 ## gi|227507884|ref|ZP_03937933.1| hypothetical protein HMPREF0496_0047 43 30 Op 2 . - CDS 47694 - 48272 330 ## gi|227507885|ref|ZP_03937934.1| hypothetical protein HMPREF0496_0048 - Prom 48293 - 48352 3.6 44 31 Tu 1 . - CDS 48390 - 48629 128 ## Lbuc_2074 hypothetical protein - Prom 48661 - 48720 6.3 45 32 Tu 1 . - CDS 49058 - 49600 278 ## gi|227507887|ref|ZP_03937936.1| hypothetical protein HMPREF0496_0050 - Prom 49744 - 49803 7.0 - Term 50137 - 50175 -1.0 46 33 Tu 1 . - CDS 50205 - 50990 728 ## COG0388 Predicted amidohydrolase - Prom 51078 - 51137 4.6 + Prom 51101 - 51160 5.8 47 34 Tu 1 . + CDS 51209 - 52165 853 ## COG4975 Putative glucose uptake permease + Term 52185 - 52222 -1.0 + Prom 52558 - 52617 6.1 48 35 Tu 1 . + CDS 52699 - 53574 506 ## COG1940 Transcriptional regulator/sugar kinase + Prom 53596 - 53655 5.4 49 36 Op 1 2/0.096 + CDS 53680 - 54792 1242 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 50 36 Op 2 . + CDS 54811 - 55197 260 ## COG0346 Lactoylglutathione lyase and related lyases + Term 55208 - 55259 8.8 51 37 Tu 1 . + CDS 55280 - 55411 93 ## LPST_C2061 glucose-6-phosphate isomerase + Prom 56313 - 56372 80.3 52 38 Op 1 . + CDS 56417 - 56623 215 ## COG0166 Glucose-6-phosphate isomerase 53 38 Op 2 . + CDS 56639 - 57592 724 ## COG4975 Putative glucose uptake permease + Term 57601 - 57646 4.3 - Term 57589 - 57634 10.8 54 39 Op 1 . - CDS 57659 - 58657 709 ## COG1609 Transcriptional regulators - Prom 58736 - 58795 7.8 - Term 58705 - 58742 2.2 55 39 Op 2 . - CDS 58805 - 59131 286 ## Lbuc_2202 hypothetical protein - Prom 59263 - 59322 8.8 + Prom 59818 - 59877 2.9 56 40 Op 1 21/0.000 + CDS 59934 - 60959 987 ## COG0547 Anthranilate phosphoribosyltransferase 57 40 Op 2 9/0.020 + CDS 60956 - 61735 606 ## COG0134 Indole-3-glycerol phosphate synthase 58 40 Op 3 23/0.000 + CDS 61739 - 62326 509 ## COG0135 Phosphoribosylanthranilate isomerase 59 40 Op 4 37/0.000 + CDS 62323 - 63543 1355 ## COG0133 Tryptophan synthase beta chain 60 40 Op 5 . + CDS 63536 - 64330 423 ## PROTEIN SUPPORTED gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc 61 41 Tu 1 . - CDS 64461 - 66341 1408 ## COG4934 Predicted protease - Prom 66398 - 66457 5.3 - Term 66443 - 66481 -0.9 62 42 Tu 1 . - CDS 66535 - 67140 299 ## LVIS_2059 hypothetical protein + Prom 66996 - 67055 5.7 63 43 Tu 1 . + CDS 67103 - 67294 118 ## 64 44 Tu 1 . - CDS 67229 - 68821 1326 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - Prom 68866 - 68925 4.5 - Term 68858 - 68904 -0.7 65 45 Tu 1 . - CDS 68929 - 69501 425 ## PROTEIN SUPPORTED gi|118587160|ref|ZP_01544589.1| ribosomal protein acetylating enzyme - Prom 69552 - 69611 4.3 - Term 69561 - 69601 8.1 66 46 Tu 1 . - CDS 69634 - 70962 1279 ## COG0477 Permeases of the major facilitator superfamily - Term 71295 - 71338 7.0 67 47 Tu 1 . - CDS 71412 - 71672 252 ## Lbuc_2215 hypothetical protein - Prom 71741 - 71800 5.6 68 48 Op 1 9/0.020 - CDS 71820 - 73043 1051 ## COG1668 ABC-type Na+ efflux pump, permease component 69 48 Op 2 . - CDS 73036 - 73932 595 ## COG4152 ABC-type uncharacterized transport system, ATPase component - Prom 74006 - 74065 9.4 70 49 Op 1 . - CDS 74474 - 74959 187 ## COG1335 Amidases related to nicotinamidase 71 49 Op 2 . - CDS 74982 - 75233 296 ## Cphy_1340 hypothetical protein - Prom 75282 - 75341 7.2 - Term 75321 - 75364 6.9 72 50 Tu 1 . - CDS 75371 - 75736 185 ## COG1733 Predicted transcriptional regulators - Prom 75859 - 75918 5.1 73 51 Tu 1 . + CDS 75913 - 76935 967 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Term 76933 - 76972 2.5 74 52 Op 1 . - CDS 76988 - 77386 216 ## gi|227507915|ref|ZP_03937964.1| hypothetical protein HMPREF0496_0078 75 52 Op 2 . - CDS 77421 - 77690 107 ## gi|227507916|ref|ZP_03937965.1| hypothetical protein HMPREF0496_0079 - Prom 77733 - 77792 5.0 76 53 Op 1 . - CDS 77839 - 79410 1224 ## lp_1649 ABC transporter, permease protein 77 53 Op 2 . - CDS 79403 - 80170 280 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 - Prom 80196 - 80255 6.3 78 54 Tu 1 . + CDS 80642 - 81205 436 ## COG1396 Predicted transcriptional regulators + Prom 81302 - 81361 6.0 79 55 Tu 1 . + CDS 81407 - 82057 308 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) + Prom 84160 - 84219 37.4 80 56 Op 1 . + CDS 84278 - 85657 172 ## SZO_05090 permease 81 56 Op 2 . + CDS 85680 - 85889 91 ## gi|227507924|ref|ZP_03937973.1| hypothetical protein HMPREF0496_0087 - Term 86047 - 86079 3.2 82 57 Tu 1 . - CDS 86096 - 86944 556 ## Lbuc_0017 hypothetical protein - Prom 86976 - 87035 5.4 - Term 86968 - 87024 4.4 83 58 Tu 1 . - CDS 87110 - 87832 735 ## COG0120 Ribose 5-phosphate isomerase - Prom 87980 - 88039 6.6 - Term 88132 - 88175 5.2 84 59 Tu 1 . - CDS 88202 - 88336 91 ## gi|227523160|ref|ZP_03953209.1| peptide ABC superfamily ATP binding cassette transporter, binding protein - Prom 88429 - 88488 4.3 - Term 88741 - 88794 7.3 85 60 Tu 1 . - CDS 88972 - 89175 254 ## gi|227507929|ref|ZP_03937978.1| hypothetical protein HMPREF0496_0092 - Prom 89286 - 89345 6.9 86 61 Op 1 . - CDS 89348 - 89584 203 ## PROTEIN SUPPORTED gi|163756262|ref|ZP_02163377.1| 50S ribosomal protein L20 87 61 Op 2 . - CDS 89610 - 90062 343 ## Lbuc_0125 integral membrane protein - Prom 90299 - 90358 8.0 88 62 Op 1 . - CDS 90458 - 90988 244 ## Lbuc_1756 hypothetical protein 89 62 Op 2 . - CDS 91028 - 91231 280 ## gi|227507934|ref|ZP_03937983.1| hypothetical protein HMPREF0496_0097 + Prom 91353 - 91412 6.2 90 63 Tu 1 . + CDS 91562 - 92200 189 ## COG1396 Predicted transcriptional regulators + Term 92210 - 92260 12.2 - Term 92276 - 92336 8.3 91 64 Tu 1 . - CDS 92367 - 93020 718 ## COG2910 Putative NADH-flavin reductase - Prom 93125 - 93184 2.5 - Term 93137 - 93179 7.1 92 65 Op 1 . - CDS 93188 - 95446 2063 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) 93 65 Op 2 . - CDS 95467 - 96825 1331 ## COG0477 Permeases of the major facilitator superfamily - Prom 97043 - 97102 6.7 + Prom 96996 - 97055 5.5 94 66 Op 1 1/0.178 + CDS 97276 - 98151 828 ## COG1940 Transcriptional regulator/sugar kinase 95 66 Op 2 . + CDS 98215 - 99216 1002 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 96 66 Op 3 . + CDS 99223 - 99990 682 ## Lbuc_2236 hypothetical protein 97 66 Op 4 . + CDS 100020 - 100409 329 ## COG0346 Lactoylglutathione lyase and related lyases + Term 100431 - 100482 11.4 + Prom 101517 - 101576 80.3 98 67 Tu 1 . + CDS 101634 - 101840 219 ## COG0166 Glucose-6-phosphate isomerase + Term 101852 - 101916 15.7 - Term 101844 - 101896 4.2 99 68 Op 1 . - CDS 101914 - 102510 452 ## COG3548 Predicted integral membrane protein 100 68 Op 2 . - CDS 102503 - 102838 372 ## LEGAS_0222 transcriptional regulator - Prom 103081 - 103140 4.2 + Prom 102995 - 103054 4.0 101 69 Tu 1 . + CDS 103113 - 103808 296 ## BP951000_0181 acyl-ACP thioesterase + Term 103816 - 103861 9.4 102 70 Tu 1 . - CDS 103859 - 105229 885 ## COG0477 Permeases of the major facilitator superfamily - Prom 105280 - 105339 2.1 103 71 Tu 1 . - CDS 105415 - 106371 759 ## COG1609 Transcriptional regulators - Prom 106395 - 106454 4.5 + Prom 106381 - 106440 5.6 104 72 Tu 1 . + CDS 106520 - 107068 578 ## Lbuc_2246 hypothetical protein + Term 107089 - 107138 11.5 105 73 Tu 1 . - CDS 107304 - 108632 1154 ## COG3579 Aminopeptidase C - Prom 108662 - 108721 5.7 - Term 108728 - 108763 3.4 106 74 Op 1 2/0.096 - CDS 108774 - 109286 702 ## COG4720 Predicted membrane protein 107 74 Op 2 . - CDS 109279 - 109875 567 ## COG4475 Uncharacterized protein conserved in bacteria 108 74 Op 3 . - CDS 109878 - 110738 525 ## COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase - Prom 110836 - 110895 4.5 + Prom 110854 - 110913 5.9 109 75 Tu 1 . + CDS 110933 - 111601 444 ## COG3619 Predicted membrane protein 110 76 Tu 1 . - CDS 111684 - 112652 670 ## COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF - Prom 112818 - 112877 4.4 111 77 Op 1 . + CDS 112919 - 114856 1387 ## gi|227507957|ref|ZP_03938006.1| hypothetical protein HMPREF0496_0120 + Prom 114930 - 114989 9.6 112 77 Op 2 . + CDS 115044 - 115523 265 ## SGO_1480 ribosomal-protein-alanine acetyltransferase + Term 115696 - 115762 19.1 - Term 115689 - 115747 18.7 113 78 Op 1 . - CDS 115769 - 116227 460 ## EF2143 hypothetical protein 114 78 Op 2 . - CDS 116245 - 116586 354 ## MCCL_1543 hypothetical protein - Prom 116657 - 116716 9.5 + Prom 116835 - 116894 7.8 115 79 Tu 1 . + CDS 116916 - 117260 318 ## gi|227507961|ref|ZP_03938010.1| hypothetical protein HMPREF0496_0124 + Prom 117357 - 117416 4.9 116 80 Op 1 . + CDS 117440 - 118891 1409 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) + Prom 119082 - 119141 4.3 117 80 Op 2 . + CDS 119164 - 121422 1525 ## gi|227507963|ref|ZP_03938012.1| conserved hypothetical protein + Term 121550 - 121605 18.1 - Term 121539 - 121590 17.3 118 81 Tu 1 . - CDS 121677 - 122612 563 ## LVIS_0012 D-alanyl-D-alanine carboxypeptidase - Prom 122741 - 122800 5.7 + Prom 122762 - 122821 10.9 119 82 Op 1 . + CDS 122919 - 123371 310 ## Lbuc_1507 hypothetical protein + Prom 123374 - 123433 2.0 120 82 Op 2 . + CDS 123454 - 123711 320 ## gi|227507966|ref|ZP_03938015.1| hypothetical protein HMPREF0496_0129 + Term 123855 - 123885 -0.1 121 83 Op 1 . - CDS 123861 - 124820 711 ## LVIS_0012 D-alanyl-D-alanine carboxypeptidase 122 83 Op 2 . - CDS 124883 - 125833 558 ## LVIS_0012 D-alanyl-D-alanine carboxypeptidase - Prom 125902 - 125961 5.8 - Term 125960 - 125998 5.1 123 84 Tu 1 . - CDS 126132 - 126911 391 ## Lbuc_2081 abortive infection protein - Prom 127099 - 127158 8.2 124 85 Tu 1 . + CDS 127127 - 129031 1163 ## COG4934 Predicted protease + Term 129110 - 129147 2.4 - Term 129214 - 129277 27.1 125 86 Op 1 . - CDS 129318 - 129701 174 ## LCRIS_01999 cytosolic protein 126 86 Op 2 . - CDS 129655 - 129936 382 ## LPST_P0022 DNA-damage-inducible protein - Prom 129963 - 130022 8.1 127 87 Op 1 . - CDS 130655 - 131419 509 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component 128 87 Op 2 . - CDS 131444 - 132118 462 ## Lbuc_0158 hypothetical protein 129 87 Op 3 . - CDS 132192 - 133094 231 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 133114 - 133173 1.7 + Prom 133205 - 133264 4.4 130 88 Tu 1 . + CDS 133313 - 133903 169 ## LSEI_2759 XRE family transcriptional regulator + Term 133939 - 133979 4.4 - Term 133914 - 133977 14.0 131 89 Tu 1 . - CDS 134012 - 135943 939 ## COG4934 Predicted protease - Prom 135967 - 136026 8.0 132 90 Op 1 . - CDS 136193 - 136402 209 ## PROTEIN SUPPORTED gi|163756262|ref|ZP_02163377.1| 50S ribosomal protein L20 133 90 Op 2 . - CDS 136418 - 136951 344 ## gi|227507979|ref|ZP_03938028.1| hypothetical protein HMPREF0496_0142 + Prom 136959 - 137018 9.7 134 91 Op 1 24/0.000 + CDS 137066 - 137971 276 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 135 91 Op 2 . + CDS 137964 - 138731 263 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component + Prom 139303 - 139362 3.9 136 92 Tu 1 . + CDS 139391 - 140521 970 ## COG0620 Methionine synthase II (cobalamin-independent) + Term 140549 - 140621 20.6 + Prom 140665 - 140724 3.4 137 93 Tu 1 . + CDS 140751 - 141158 280 ## LCAZH_1202 hypothetical protein + Term 141163 - 141215 5.5 + Prom 141327 - 141386 7.3 138 94 Tu 1 . + CDS 141544 - 142725 516 ## COG0477 Permeases of the major facilitator superfamily + Term 142918 - 142953 1.5 - Term 142834 - 142880 5.1 139 95 Tu 1 . - CDS 142894 - 143469 699 ## gi|227507985|ref|ZP_03938034.1| conserved hypothetical protein - Prom 143598 - 143657 80.4 + Prom 144472 - 144531 80.4 140 96 Op 1 . + CDS 144620 - 146275 1090 ## LSA1584 putative teichoic acid/polysaccharide glycosyl transferase + Term 146411 - 146450 0.3 + Prom 146351 - 146410 7.8 141 96 Op 2 . + CDS 146564 - 148039 551 ## LKI_04285 hypothetical protein + Term 148080 - 148140 0.6 142 97 Tu 1 . - CDS 148043 - 148408 262 ## LPST_C2159 hypothetical protein - Prom 148485 - 148544 4.9 + Prom 148494 - 148553 5.2 143 98 Tu 1 . + CDS 148601 - 148783 89 ## gi|227511007|ref|ZP_03941056.1| hypothetical protein HMPREF0497_0129 + Term 148844 - 148890 2.6 144 99 Tu 1 . - CDS 148743 - 148943 97 ## gi|227507989|ref|ZP_03938038.1| hypothetical protein HMPREF0496_0152 + Prom 148916 - 148975 2.7 145 100 Tu 1 . + CDS 149009 - 150214 1100 ## Lbuc_1881 hypothetical protein + Term 150226 - 150275 14.5 - Term 150214 - 150263 6.1 146 101 Op 1 . - CDS 150289 - 151176 467 ## COG0726 Predicted xylanase/chitin deacetylase 147 101 Op 2 . - CDS 151169 - 151414 224 ## Lbuc_0161 hypothetical protein 148 101 Op 3 . - CDS 151474 - 152688 1062 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 149 101 Op 4 . - CDS 152734 - 153870 784 ## COG3525 N-acetyl-beta-hexosaminidase - Prom 153925 - 153984 3.9 150 102 Tu 1 . + CDS 154161 - 155054 572 ## COG0679 Predicted permeases + Term 155219 - 155260 0.2 151 103 Tu 1 . - CDS 155159 - 156451 902 ## COG3048 D-serine dehydratase - Prom 156520 - 156579 4.8 152 104 Op 1 . - CDS 156729 - 157406 543 ## COG1131 ABC-type multidrug transport system, ATPase component 153 104 Op 2 . - CDS 157418 - 158089 352 ## LEUM_0913 hypothetical protein - Prom 158141 - 158200 3.9 154 105 Tu 1 . + CDS 157980 - 158186 86 ## 155 106 Op 1 . - CDS 158206 - 158391 74 ## 156 106 Op 2 . - CDS 158306 - 159028 590 ## COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis - Prom 159050 - 159109 6.4 + Prom 160691 - 160750 80.3 157 107 Op 1 . + CDS 160903 - 161646 246 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 161718 - 161758 6.1 + Prom 161705 - 161764 3.2 158 107 Op 2 . + CDS 161952 - 162809 592 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases + Term 162817 - 162853 2.5 + Prom 162843 - 162902 9.7 159 108 Op 1 . + CDS 163142 - 163411 222 ## gi|227508003|ref|ZP_03938052.1| hypothetical protein HMPREF0496_0166 + Prom 163426 - 163485 3.0 160 108 Op 2 . + CDS 163505 - 163909 207 ## gi|227508004|ref|ZP_03938053.1| hypothetical protein HMPREF0496_0167 161 108 Op 3 . + CDS 163949 - 164335 261 ## gi|227508005|ref|ZP_03938054.1| hypothetical protein HMPREF0496_0168 + Term 164359 - 164404 11.4 - Term 164347 - 164392 8.1 162 109 Op 1 5/0.036 - CDS 164405 - 164953 505 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 163 109 Op 2 . - CDS 164957 - 166033 1126 ## COG2252 Permeases - Prom 166089 - 166148 5.0 + Prom 166052 - 166111 9.6 164 110 Op 1 . + CDS 166310 - 167176 598 ## Lbuc_0637 hypothetical protein 165 110 Op 2 . + CDS 167176 - 168348 746 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities + Term 168367 - 168419 10.7 + Prom 168631 - 168690 4.9 166 111 Tu 1 . + CDS 168842 - 171091 1785 ## COG1372 Intein/homing endonuclease + Term 171177 - 171214 3.0 + Prom 171111 - 171170 5.3 167 112 Op 1 . + CDS 171322 - 171597 84 ## gi|227508011|ref|ZP_03938060.1| hypothetical protein HMPREF0496_0174 + Prom 171602 - 171661 6.0 168 112 Op 2 . + CDS 171693 - 172229 595 ## COG2096 Uncharacterized conserved protein 169 113 Op 1 3/0.051 + CDS 172373 - 172933 437 ## COG2186 Transcriptional regulators 170 113 Op 2 . + CDS 173003 - 174202 799 ## COG2807 Cyanate permease + Prom 174211 - 174270 5.2 171 114 Tu 1 . + CDS 174318 - 175745 898 ## COG0477 Permeases of the major facilitator superfamily + Prom 175770 - 175829 4.4 172 115 Tu 1 . + CDS 175939 - 176205 224 ## gi|227508016|ref|ZP_03938065.1| conserved hypothetical protein - Term 176133 - 176181 0.0 173 116 Tu 1 . - CDS 176213 - 176659 450 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 176688 - 176747 7.4 - Term 176786 - 176841 2.2 174 117 Tu 1 . - CDS 176916 - 177371 430 ## Lbuc_2216 hypothetical protein - Prom 177398 - 177457 3.2 - Term 177531 - 177574 10.0 175 118 Tu 1 . - CDS 177615 - 178625 978 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase - Prom 178810 - 178869 6.1 - Term 178813 - 178861 6.1 176 119 Tu 1 . - CDS 178883 - 180241 1239 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 180268 - 180327 7.8 + Prom 180264 - 180323 8.0 177 120 Tu 1 . + CDS 180552 - 180776 255 ## gi|227508021|ref|ZP_03938070.1| hypothetical protein HMPREF0496_0184 - Term 180504 - 180539 -1.0 178 121 Op 1 . - CDS 180689 - 180874 110 ## 179 121 Op 2 . - CDS 180927 - 181331 450 ## Lbuc_1915 hypothetical protein - Prom 181371 - 181430 6.3 - Term 181431 - 181473 -0.1 180 122 Op 1 . - CDS 181706 - 183106 1601 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Term 183144 - 183178 -1.0 181 122 Op 2 . - CDS 183326 - 184723 1351 ## COG0114 Fumarase - Prom 184762 - 184821 10.4 + Prom 185145 - 185204 6.7 182 123 Tu 1 . + CDS 185281 - 187041 1712 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] + Term 187074 - 187125 7.1 - Term 187144 - 187182 2.1 183 124 Tu 1 . - CDS 187330 - 188490 480 ## COG0675 Transposase and inactivated derivatives + Prom 188980 - 189039 6.8 184 125 Tu 1 . + CDS 189087 - 189920 440 ## COG0196 FAD synthase - Term 189972 - 190007 -1.0 185 126 Tu 1 . - CDS 190243 - 190437 232 ## gi|227508028|ref|ZP_03938077.1| hypothetical protein HMPREF0496_0191 186 127 Tu 1 . - CDS 190805 - 191074 204 ## gi|227511050|ref|ZP_03941099.1| ABC superfamily ATP binding cassette transporter, permease protein + Prom 192288 - 192347 39.6 187 128 Tu 1 . + CDS 192549 - 193628 377 ## COG3376 High-affinity nickel permease + Term 193630 - 193673 3.3 - Term 193618 - 193661 4.3 188 129 Tu 1 . - CDS 193712 - 194530 460 ## COG0583 Transcriptional regulator - Prom 194691 - 194750 4.7 + Prom 194622 - 194681 6.0 189 130 Tu 1 . + CDS 194724 - 196346 1354 ## COG0281 Malic enzyme + Term 196367 - 196408 2.5 - Term 196355 - 196396 7.1 190 131 Op 1 . - CDS 196413 - 196895 348 ## LGG_02794 GNAT family acetyltransferase 191 131 Op 2 . - CDS 196920 - 197618 546 ## Lbuc_2104 abortive infection protein - Prom 197741 - 197800 8.8 192 132 Tu 1 . - CDS 197821 - 198309 224 ## lp_0948 hypothetical protein - Prom 198391 - 198450 6.5 + Prom 198333 - 198392 6.1 193 133 Op 1 . + CDS 198586 - 198765 150 ## gi|227508037|ref|ZP_03938086.1| hypothetical protein HMPREF0496_0200 194 133 Op 2 . + CDS 198771 - 199457 561 ## COG1131 ABC-type multidrug transport system, ATPase component 195 133 Op 3 . + CDS 199454 - 200101 345 ## gi|227508039|ref|ZP_03938088.1| conserved hypothetical protein - Term 200437 - 200482 8.2 196 134 Tu 1 . - CDS 200505 - 202445 1354 ## COG4934 Predicted protease - Prom 202490 - 202549 6.7 + Prom 202480 - 202539 11.7 197 135 Op 1 . + CDS 202665 - 203495 620 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) + Prom 203565 - 203624 4.5 198 135 Op 2 . + CDS 203654 - 203851 187 ## gi|227508042|ref|ZP_03938091.1| hypothetical protein HMPREF0496_0205 + Term 203896 - 203934 5.2 + Prom 204025 - 204084 6.2 199 136 Tu 1 . + CDS 204171 - 205370 371 ## gi|227508043|ref|ZP_03938092.1| conserved hypothetical protein 200 137 Tu 1 . - CDS 205411 - 206736 1095 ## COG0477 Permeases of the major facilitator superfamily - Prom 206821 - 206880 8.4 + Prom 206778 - 206837 9.1 201 138 Tu 1 . + CDS 206886 - 207521 630 ## OEOE_0704 hypothetical protein + Term 207547 - 207585 1.2 - Term 207488 - 207551 13.0 202 139 Op 1 . - CDS 207567 - 207986 389 ## LC705_02888 hypothetical protein 203 139 Op 2 . - CDS 208062 - 208886 494 ## PEPE_0261 XRE family transcriptional regulator 204 139 Op 3 . - CDS 208919 - 209581 561 ## Lbuc_2278 abortive infection protein 205 139 Op 4 . - CDS 209606 - 210082 363 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - Prom 210172 - 210231 4.6 206 140 Tu 1 . - CDS 210250 - 211500 820 ## COG3177 Uncharacterized conserved protein - Prom 211607 - 211666 12.5 + Prom 211535 - 211594 11.4 207 141 Op 1 . + CDS 211835 - 212335 420 ## gi|227508051|ref|ZP_03938100.1| hypothetical protein HMPREF0496_0214 208 141 Op 2 24/0.000 + CDS 212440 - 213357 315 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 209 141 Op 3 . + CDS 213354 - 214133 470 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component + Term 214174 - 214233 9.1 - Term 214271 - 214314 6.2 210 142 Tu 1 . - CDS 214351 - 215361 951 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase - Prom 215466 - 215525 3.6 - Term 215378 - 215423 -0.9 211 143 Op 1 1/0.178 - CDS 215599 - 215847 335 ## COG1937 Uncharacterized protein conserved in bacteria 212 143 Op 2 3/0.051 - CDS 215850 - 217505 1611 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 213 143 Op 3 . - CDS 217562 - 217870 217 ## COG0607 Rhodanese-related sulfurtransferase - Prom 217904 - 217963 5.9 - Term 217907 - 217948 -1.0 214 144 Op 1 . - CDS 218105 - 219904 1342 ## COG0481 Membrane GTPase LepA 215 144 Op 2 . - CDS 219919 - 220401 328 ## JDM1_2495 transcription regulator - Term 220800 - 220861 6.0 216 145 Op 1 . - CDS 220892 - 221005 107 ## 217 145 Op 2 . - CDS 221032 - 221301 467 ## PROTEIN SUPPORTED gi|227508060|ref|ZP_03938109.1| SSU ribosomal protein S14P 218 145 Op 3 . - CDS 221315 - 221464 250 ## PROTEIN SUPPORTED gi|227508061|ref|ZP_03938110.1| 50S ribosomal protein L33 219 145 Op 4 3/0.051 - CDS 221487 - 221723 151 ## COG0492 Thioredoxin reductase 220 145 Op 5 . - CDS 221650 - 222615 809 ## COG0492 Thioredoxin reductase - Prom 222785 - 222844 7.0 - Term 222802 - 222854 -0.7 221 146 Op 1 . - CDS 222877 - 223665 486 ## Lbuc_2279 hypothetical protein 222 146 Op 2 8/0.020 - CDS 223658 - 224371 193 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 223 146 Op 3 . - CDS 224368 - 224742 459 ## COG1725 Predicted transcriptional regulators - Prom 224771 - 224830 11.8 + Prom 224807 - 224866 6.5 224 147 Tu 1 . + CDS 224976 - 225866 1010 ## COG1250 3-hydroxyacyl-CoA dehydrogenase + Term 225920 - 225969 8.5 - Term 225908 - 225957 8.5 225 148 Tu 1 . - CDS 225964 - 227277 999 ## COG0477 Permeases of the major facilitator superfamily - Prom 227405 - 227464 5.6 + Prom 227718 - 227777 4.3 226 149 Tu 1 . + CDS 227797 - 228114 172 ## + Term 228295 - 228330 -0.9 - Term 228110 - 228144 3.6 227 150 Op 1 . - CDS 228276 - 229487 1110 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 228 150 Op 2 . - CDS 229484 - 230494 924 ## COG1893 Ketopantoate reductase - Prom 230517 - 230576 6.0 229 151 Tu 1 . - CDS 230945 - 231142 125 ## - Prom 231282 - 231341 4.2 230 152 Tu 1 . + CDS 231238 - 231762 314 ## COG3153 Predicted acetyltransferase + Prom 231788 - 231847 2.6 231 153 Tu 1 . + CDS 231895 - 232314 424 ## gi|227508074|ref|ZP_03938123.1| hypothetical protein HMPREF0496_0237 + Term 232466 - 232505 5.0 - Term 232445 - 232497 9.1 232 154 Op 1 . - CDS 232521 - 233102 500 ## COG1309 Transcriptional regulator 233 154 Op 2 . - CDS 233155 - 234480 914 ## LEUM_0159 hypothetical protein - Prom 234509 - 234568 6.6 - Term 234601 - 234662 18.2 234 155 Tu 1 . - CDS 234748 - 235695 835 ## COG2040 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) - Prom 235763 - 235822 8.2 + Prom 235676 - 235735 4.8 235 156 Tu 1 . + CDS 235818 - 237212 1101 ## COG0833 Amino acid transporters + Term 237244 - 237284 7.4 - Term 237185 - 237223 3.3 236 157 Tu 1 . - CDS 237237 - 238220 573 ## COG1275 Tellurite resistance protein and related permeases - Prom 238244 - 238303 9.5 + Prom 238220 - 238279 11.5 237 158 Tu 1 . + CDS 238330 - 239157 644 ## COG0583 Transcriptional regulator + Term 239169 - 239216 4.1 - Term 239321 - 239375 16.4 238 159 Op 1 . - CDS 239421 - 240749 1159 ## COG0527 Aspartokinases 239 159 Op 2 . - CDS 240746 - 241957 936 ## COG0460 Homoserine dehydrogenase - Prom 241992 - 242051 6.8 + Prom 241760 - 241819 7.5 240 160 Op 1 19/0.000 + CDS 242032 - 243540 1161 ## COG0498 Threonine synthase 241 160 Op 2 1/0.178 + CDS 243512 - 244417 615 ## COG0083 Homoserine kinase 242 160 Op 3 . + CDS 244395 - 244829 319 ## COG4492 ACT domain-containing protein - Term 244841 - 244910 6.3 243 161 Tu 1 . - CDS 244929 - 245306 258 ## gi|227508086|ref|ZP_03938135.1| XRE family DNA-binding protein + Prom 245774 - 245833 2.8 244 162 Op 1 . + CDS 246026 - 246796 996 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 245 162 Op 2 32/0.000 + CDS 246828 - 247922 972 ## COG1135 ABC-type metal ion transport system, ATPase component 246 162 Op 3 22/0.000 + CDS 247900 - 248574 681 ## COG2011 ABC-type metal ion transport system, permease component 247 162 Op 4 . + CDS 248600 - 249460 904 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Term 249467 - 249522 2.1 - Term 249461 - 249503 4.0 248 163 Tu 1 . - CDS 249547 - 250134 524 ## Lbuc_2314 hypothetical protein - Prom 250244 - 250303 7.5 + Prom 250223 - 250282 10.2 249 164 Op 1 1/0.178 + CDS 250513 - 251970 1663 ## COG0531 Amino acid transporters + Term 252076 - 252120 1.2 + Prom 251977 - 252036 5.5 250 164 Op 2 . + CDS 252141 - 253493 1121 ## COG0160 4-aminobutyrate aminotransferase and related aminotransferases + Term 253511 - 253572 10.1 - Term 253506 - 253553 12.0 251 165 Op 1 6/0.030 - CDS 253576 - 254778 745 ## COG0477 Permeases of the major facilitator superfamily 252 165 Op 2 . - CDS 254775 - 255230 407 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 255260 - 255319 3.7 + Prom 255209 - 255268 3.5 253 166 Tu 1 . + CDS 255401 - 255883 386 ## COG3613 Nucleoside 2-deoxyribosyltransferase + Term 255907 - 255953 14.3 - Term 255960 - 256012 16.2 254 167 Tu 1 . - CDS 256110 - 257498 1152 ## COG1114 Branched-chain amino acid permeases - Prom 257528 - 257587 4.9 255 168 Tu 1 . - CDS 257960 - 259147 1031 ## COG0475 Kef-type K+ transport systems, membrane components - Prom 259194 - 259253 7.0 - Term 259202 - 259249 11.3 256 169 Op 1 . - CDS 259418 - 261187 1572 ## COG1404 Subtilisin-like serine proteases 257 169 Op 2 . - CDS 261219 - 261320 74 ## - Prom 261398 - 261457 4.7 - Term 261426 - 261488 10.1 258 170 Op 1 32/0.000 - CDS 261509 - 262234 847 ## COG0704 Phosphate uptake regulator 259 170 Op 2 7/0.030 - CDS 262247 - 263029 352 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 260 170 Op 3 41/0.000 - CDS 263046 - 263840 301 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 261 170 Op 4 38/0.000 - CDS 263850 - 264737 910 ## COG0581 ABC-type phosphate transport system, permease component 262 170 Op 5 39/0.000 - CDS 264734 - 265696 828 ## COG0573 ABC-type phosphate transport system, permease component 263 170 Op 6 . - CDS 265839 - 266732 979 ## COG0226 ABC-type phosphate transport system, periplasmic component - Prom 266847 - 266906 4.2 + Prom 266744 - 266803 5.0 264 171 Tu 1 . + CDS 266919 - 267650 499 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 267656 - 267715 5.4 - Term 267753 - 267791 0.2 265 172 Tu 1 . - CDS 267793 - 268005 70 ## gi|227508107|ref|ZP_03938156.1| hypothetical protein HMPREF0496_0270 - Prom 268117 - 268176 8.5 + Prom 268476 - 268535 6.7 266 173 Tu 1 . + CDS 268644 - 270095 1383 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 270111 - 270157 3.6 - Term 270099 - 270145 12.1 267 174 Op 1 . - CDS 270237 - 270419 101 ## - Prom 270521 - 270580 5.5 268 174 Op 2 . - CDS 270659 - 271429 405 ## Lbuc_2342 hypothetical protein - Prom 271460 - 271519 4.9 - Term 271505 - 271552 2.4 269 175 Op 1 3/0.051 - CDS 271580 - 272659 991 ## COG0337 3-dehydroquinate synthetase 270 175 Op 2 . - CDS 272656 - 273672 1083 ## COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase - Prom 273694 - 273753 5.6 + Prom 274559 - 274618 6.7 271 176 Op 1 35/0.000 + CDS 274710 - 276188 1063 ## COG0147 Anthranilate/para-aminobenzoate synthases component I 272 176 Op 2 . + CDS 276172 - 276783 513 ## COG0512 Anthranilate/para-aminobenzoate synthases component II + Term 276908 - 276947 -0.9 - Term 276750 - 276780 -0.4 273 177 Tu 1 . - CDS 276976 - 277557 278 ## COG1859 RNA:NAD 2'-phosphotransferase - Prom 277579 - 277638 5.3 + Prom 277977 - 278036 6.3 274 178 Tu 1 . + CDS 278163 - 278744 415 ## COG0406 Fructose-2,6-bisphosphatase + Term 278807 - 278859 14.7 - Term 278796 - 278846 13.4 275 179 Tu 1 . - CDS 278867 - 279454 614 ## COG0681 Signal peptidase I - Prom 279556 - 279615 7.0 + Prom 279517 - 279576 6.4 276 180 Tu 1 . + CDS 279680 - 280882 952 ## COG0477 Permeases of the major facilitator superfamily + Term 280885 - 280933 13.3 - Term 280867 - 280927 18.0 277 181 Op 1 11/0.000 - CDS 280966 - 282903 1566 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division 278 181 Op 2 4/0.046 - CDS 282939 - 284333 1300 ## COG0486 Predicted GTPase - Prom 284481 - 284540 4.9 - Term 284400 - 284448 2.1 279 182 Tu 1 . - CDS 284544 - 285287 577 ## COG1847 Predicted RNA-binding protein - Prom 285313 - 285372 9.5 + Prom 285272 - 285331 6.3 280 183 Tu 1 . + CDS 285533 - 286486 576 ## COG0053 Predicted Co/Zn/Cd cation transporters + Prom 286599 - 286658 6.5 281 184 Tu 1 . + CDS 286905 - 287831 936 ## COG0039 Malate/lactate dehydrogenases + Term 287858 - 287899 11.1 - Term 287846 - 287887 7.3 282 185 Tu 1 . - CDS 287898 - 288479 374 ## COG0706 Preprotein translocase subunit YidC - Prom 288501 - 288560 5.8 + Prom 288507 - 288566 5.6 283 186 Tu 1 . + CDS 288586 - 288783 118 ## - Term 288592 - 288628 -0.7 284 187 Op 1 . - CDS 288731 - 289111 243 ## COG0594 RNase P protein component - Term 289121 - 289150 1.4 285 187 Op 2 . - CDS 289152 - 289286 224 ## PROTEIN SUPPORTED gi|227508126|ref|ZP_03938175.1| 50S ribosomal protein L34P - Prom 289411 - 289470 4.8 + Prom 289696 - 289755 5.8 286 188 Op 1 16/0.000 + CDS 289796 - 291148 1076 ## COG0593 ATPase involved in DNA replication initiation + Term 291161 - 291214 3.2 + Prom 291263 - 291322 7.5 287 188 Op 2 6/0.030 + CDS 291342 - 292481 559 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) + Term 292534 - 292578 6.1 + Prom 292600 - 292659 9.4 288 189 Op 1 9/0.020 + CDS 292853 - 293083 144 ## COG2501 Uncharacterized conserved protein 289 189 Op 2 9/0.020 + CDS 293080 - 294201 656 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 290 189 Op 3 24/0.000 + CDS 294214 - 296157 1577 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit + Term 296208 - 296246 3.2 + Prom 296159 - 296218 3.6 291 189 Op 4 . + CDS 296248 - 298800 2044 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Term 298825 - 298873 8.1 + Prom 298856 - 298915 8.2 292 190 Tu 1 . + CDS 298947 - 300056 1136 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases + Term 300074 - 300114 4.4 + Prom 300096 - 300155 7.4 293 191 Op 1 24/0.000 + CDS 300289 - 300585 505 ## PROTEIN SUPPORTED gi|227508136|ref|ZP_03938185.1| 30S ribosomal protein S6 294 191 Op 2 21/0.000 + CDS 300621 - 301142 372 ## COG0629 Single-stranded DNA-binding protein 295 191 Op 3 . + CDS 301183 - 301419 387 ## PROTEIN SUPPORTED gi|227508138|ref|ZP_03938187.1| 30S ribosomal protein S18 + Term 301434 - 301481 11.1 + Prom 301511 - 301570 8.3 296 192 Op 1 9/0.020 + CDS 301617 - 303629 833 ## PROTEIN SUPPORTED gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 297 192 Op 2 16/0.000 + CDS 303667 - 304119 738 ## PROTEIN SUPPORTED gi|227508140|ref|ZP_03938189.1| ribosomal protein L9 + Prom 304158 - 304217 5.9 298 192 Op 3 . + CDS 304280 - 305659 1190 ## COG0305 Replicative DNA helicase + Term 305689 - 305730 5.7 - TRNA 305793 - 305868 90.0 # Lys CTT 0 0 + Prom 305904 - 305963 4.6 299 193 Tu 1 8/0.020 + CDS 306094 - 306810 696 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Prom 306846 - 306905 5.5 300 194 Op 1 4/0.046 + CDS 307028 - 308704 1345 ## COG5002 Signal transduction histidine kinase 301 194 Op 2 4/0.046 + CDS 308694 - 309995 877 ## COG4863 Uncharacterized protein conserved in bacteria 302 194 Op 3 4/0.046 + CDS 310018 - 310854 720 ## COG4853 Uncharacterized protein conserved in bacteria 303 194 Op 4 3/0.051 + CDS 310875 - 311678 561 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I + Prom 311687 - 311746 6.9 304 194 Op 5 1/0.178 + CDS 311766 - 313028 1228 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain + Term 313085 - 313124 7.5 + Prom 313426 - 313485 6.9 305 195 Op 1 . + CDS 313584 - 314069 429 ## COG1576 Uncharacterized conserved protein 306 195 Op 2 . + CDS 314094 - 314675 588 ## PROTEIN SUPPORTED gi|148988990|ref|ZP_01820390.1| hypothetical protein CGSSp6BS73_02415 + Prom 314719 - 314778 4.4 307 196 Op 1 . + CDS 314823 - 315020 78 ## 308 196 Op 2 . + CDS 315030 - 315617 430 ## COG4721 Predicted membrane protein + Prom 315665 - 315724 2.5 309 197 Op 1 2/0.096 + CDS 315772 - 317157 1157 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 310 197 Op 2 . + CDS 317154 - 318476 1005 ## COG1953 Cytosine/uracil/thiamine/allantoin permeases + Term 318505 - 318566 6.1 - Term 318491 - 318553 10.1 311 198 Op 1 . - CDS 318581 - 319390 551 ## LVIS_1825 D-alanyl-D-alanine carboxypeptidase - Prom 319414 - 319473 3.5 312 198 Op 2 . - CDS 319487 - 320077 310 ## Lbuc_1804 hypothetical protein - Prom 320190 - 320249 6.8 + Prom 320228 - 320287 10.6 313 199 Op 1 . + CDS 320394 - 320795 353 ## Lbuc_0096 CrcB-like protein 314 199 Op 2 . + CDS 320789 - 321148 197 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 315 199 Op 3 . + CDS 321203 - 322066 442 ## COG1284 Uncharacterized conserved protein + Term 322145 - 322196 2.1 - Term 322131 - 322183 6.1 316 200 Tu 1 . - CDS 322226 - 322963 227 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 - Prom 323011 - 323070 11.5 + Prom 323080 - 323139 5.9 317 201 Op 1 . + CDS 323180 - 324163 945 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) + Prom 324179 - 324238 5.2 318 201 Op 2 . + CDS 324273 - 324899 523 ## COG2085 Predicted dinucleotide-binding enzymes + Term 324903 - 324971 24.0 - Term 324894 - 324954 15.0 319 202 Tu 1 . - CDS 324986 - 325516 514 ## Lbuc_0120 hypothetical protein - Prom 325677 - 325736 5.2 + Prom 325609 - 325668 7.4 320 203 Op 1 . + CDS 325706 - 326458 422 ## COG1489 DNA-binding protein, stimulates sugar fermentation 321 203 Op 2 . + CDS 326481 - 327512 761 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Prom 327519 - 327578 5.8 322 204 Tu 1 . + CDS 327674 - 328366 471 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Term 328380 - 328438 11.1 + Prom 328668 - 328727 3.9 323 205 Op 1 10/0.005 + CDS 328795 - 329886 721 ## COG3839 ABC-type sugar transport systems, ATPase components 324 205 Op 2 38/0.000 + CDS 329879 - 330841 959 ## COG1175 ABC-type sugar transport systems, permease components 325 205 Op 3 14/0.000 + CDS 330841 - 331671 635 ## COG0395 ABC-type sugar transport system, permease component 326 205 Op 4 2/0.096 + CDS 331668 - 333038 1361 ## COG1653 ABC-type sugar transport system, periplasmic component 327 205 Op 5 . + CDS 333119 - 333811 573 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Term 333954 - 334008 8.0 + Prom 333994 - 334053 5.9 328 206 Op 1 . + CDS 334098 - 334337 118 ## gi|227508171|ref|ZP_03938220.1| hypothetical protein HMPREF0496_0334 329 206 Op 2 . + CDS 334386 - 334532 130 ## gi|227508172|ref|ZP_03938221.1| hypothetical protein HMPREF0496_0335 + Prom 334575 - 334634 3.9 330 207 Tu 1 . + CDS 334855 - 335700 604 ## Lbuc_1936 hypothetical protein + Term 335737 - 335783 8.2 - Term 335725 - 335771 7.4 331 208 Tu 1 . - CDS 335785 - 336759 917 ## gi|227508174|ref|ZP_03938223.1| conserved hypothetical protein - Prom 336866 - 336925 8.1 + Prom 337119 - 337178 7.5 332 209 Op 1 . + CDS 337251 - 338582 432 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 333 209 Op 2 . + CDS 338652 - 338921 340 ## gi|227508176|ref|ZP_03938225.1| hypothetical protein HMPREF0496_0339 + Term 338939 - 338975 -0.0 + Prom 339022 - 339081 5.5 334 210 Tu 1 . + CDS 339192 - 340037 646 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Prom 340121 - 340180 7.3 335 211 Tu 1 . + CDS 340350 - 340991 312 ## LGG_02395 immunity protein PlnI, membrane-bound protease CAAX family + Term 341241 - 341281 -0.8 336 212 Tu 1 . - CDS 340988 - 341623 372 ## PEPE_1828 hypothetical protein - Prom 341661 - 341720 5.0 - Term 341684 - 341724 3.4 337 213 Op 1 . - CDS 341763 - 342470 604 ## COG2138 Uncharacterized conserved protein 338 213 Op 2 . - CDS 342483 - 342941 601 ## COG0716 Flavodoxins 339 213 Op 3 . - CDS 342938 - 344563 1356 ## COG0155 Sulfite reductase, beta subunit (hemoprotein) 340 213 Op 4 18/0.000 - CDS 344579 - 346270 1453 ## COG2895 GTPases - Sulfate adenylate transferase subunit 1 - Term 346446 - 346504 7.0 341 213 Op 5 . - CDS 346540 - 347340 547 ## COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes 342 213 Op 6 6/0.030 - CDS 347357 - 347680 224 ## COG1146 Ferredoxin 343 213 Op 7 . - CDS 347670 - 349349 1580 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 344 213 Op 8 17/0.000 - CDS 349366 - 350445 931 ## COG1118 ABC-type sulfate/molybdate transport systems, ATPase component 345 213 Op 9 . - CDS 350451 - 350678 177 ## COG4208 ABC-type sulfate transport system, permease component 346 213 Op 10 17/0.000 - CDS 350688 - 351269 353 ## COG4208 ABC-type sulfate transport system, permease component 347 213 Op 11 9/0.020 - CDS 351276 - 352100 664 ## COG0555 ABC-type sulfate transport system, permease component - Prom 352181 - 352240 1.6 348 214 Tu 1 . - CDS 352281 - 353345 1083 ## COG1613 ABC-type sulfate transport system, periplasmic component - Prom 353443 - 353502 5.9 349 215 Tu 1 . - CDS 353841 - 354746 652 ## COG0583 Transcriptional regulator - Prom 354785 - 354844 2.3 + Prom 355246 - 355305 9.4 350 216 Tu 1 . + CDS 355344 - 356339 753 ## COG0492 Thioredoxin reductase 351 217 Op 1 2/0.096 + CDS 356705 - 358114 1118 ## COG0007 Uroporphyrinogen-III methylase 352 217 Op 2 4/0.046 + CDS 358144 - 358602 232 ## COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) 353 217 Op 3 4/0.046 + CDS 358608 - 359948 1098 ## COG0373 Glutamyl-tRNA reductase 354 217 Op 4 . + CDS 359938 - 360849 657 ## COG0181 Porphobilinogen deaminase 355 217 Op 5 7/0.030 + CDS 360875 - 361855 867 ## COG0113 Delta-aminolevulinic acid dehydratase 356 217 Op 6 . + CDS 361913 - 363157 1106 ## COG0001 Glutamate-1-semialdehyde aminotransferase + Term 363176 - 363223 9.1 + Prom 363168 - 363227 3.9 357 218 Tu 1 . + CDS 363274 - 363951 200 ## LAR_1584 putative type I site-specific deoxyribonuclease + Term 364200 - 364242 -0.6 - Term 363952 - 363992 2.1 358 219 Op 1 . - CDS 364003 - 364401 450 ## Lbuc_2088 hypothetical protein 359 219 Op 2 . - CDS 364467 - 365309 958 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 360 219 Op 3 . - CDS 365332 - 365649 182 ## Lbuc_0133 hypothetical protein - Prom 365762 - 365821 5.7 + Prom 365713 - 365772 8.9 361 220 Op 1 . + CDS 365873 - 366856 764 ## COG0276 Protoheme ferro-lyase (ferrochelatase) 362 220 Op 2 . + CDS 366828 - 368150 1119 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family 363 220 Op 3 . + CDS 368212 - 368973 484 ## Lbuc_0136 NADPH-dependent FMN reductase + Term 369006 - 369072 2.3 + Prom 369052 - 369111 5.9 364 221 Op 1 . + CDS 369220 - 370080 627 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase 365 221 Op 2 . + CDS 370086 - 371279 677 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family 366 222 Tu 1 . - CDS 371287 - 371976 723 ## COG2357 Uncharacterized protein conserved in bacteria - Prom 372011 - 372070 8.2 - Term 372031 - 372079 16.4 367 223 Tu 1 . - CDS 372106 - 373023 896 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Prom 373088 - 373147 4.4 - Term 373045 - 373093 9.1 368 224 Op 1 . - CDS 373169 - 373648 518 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) - Prom 373694 - 373753 5.6 369 224 Op 2 . - CDS 373798 - 375126 1293 ## COG0477 Permeases of the major facilitator superfamily - Prom 375255 - 375314 8.9 - Term 375314 - 375360 10.5 370 225 Op 1 . - CDS 375396 - 375992 347 ## COG1011 Predicted hydrolase (HAD superfamily) - Prom 376022 - 376081 2.0 371 225 Op 2 . - CDS 376085 - 376513 249 ## Lbuc_0073 regulatory protein MarR - Prom 376547 - 376606 5.0 + Prom 376548 - 376607 3.9 372 226 Op 1 3/0.051 + CDS 376651 - 378327 1488 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 373 226 Op 2 . + CDS 378346 - 379056 689 ## COG3527 Alpha-acetolactate decarboxylase + Term 379161 - 379201 5.1 + Prom 379318 - 379377 9.8 374 227 Tu 1 . + CDS 379474 - 380862 1393 ## COG0477 Permeases of the major facilitator superfamily + Term 380957 - 381016 13.4 - Term 380947 - 381000 4.0 375 228 Op 1 . - CDS 381002 - 381292 89 ## gi|227508218|ref|ZP_03938267.1| hypothetical protein HMPREF0496_0381 376 228 Op 2 . - CDS 381314 - 382000 704 ## COG0693 Putative intracellular protease/amidase - Prom 382166 - 382225 6.2 377 229 Op 1 24/0.000 + CDS 382264 - 383175 284 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 378 229 Op 2 . + CDS 383182 - 383955 591 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component + Term 383999 - 384052 15.4 + Prom 384097 - 384156 5.8 379 230 Op 1 12/0.000 + CDS 384197 - 386386 1550 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase 380 230 Op 2 . + CDS 386364 - 386951 374 ## COG0602 Organic radical activating enzymes + Term 386972 - 387028 8.2 - Term 386960 - 387014 8.6 381 231 Tu 1 . - CDS 387041 - 388744 1327 ## COG0477 Permeases of the major facilitator superfamily - Prom 388872 - 388931 5.8 + Prom 388720 - 388779 8.2 382 232 Op 1 . + CDS 388927 - 389451 452 ## lp_1688 transcription regulator (putative) 383 232 Op 2 . + CDS 389485 - 389937 308 ## Lbuc_0163 hypothetical protein 384 232 Op 3 . + CDS 389937 - 390581 481 ## COG2323 Predicted membrane protein + Term 390651 - 390701 5.1 + Prom 390714 - 390773 8.3 385 233 Tu 1 . + CDS 390878 - 391612 314 ## COG1396 Predicted transcriptional regulators - Term 391564 - 391603 0.5 386 234 Tu 1 . - CDS 391618 - 392142 143 ## COG1396 Predicted transcriptional regulators - Prom 392177 - 392236 7.3 - Term 392294 - 392346 13.1 387 235 Tu 1 . - CDS 392430 - 393839 1167 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 394067 - 394126 9.2 388 236 Tu 1 . + CDS 394281 - 395456 1318 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 395491 - 395526 1.0 + Prom 395480 - 395539 7.4 389 237 Tu 1 . + CDS 395576 - 396208 477 ## COG0110 Acetyltransferase (isoleucine patch superfamily) + Term 396219 - 396273 8.6 - Term 396207 - 396261 12.4 390 238 Tu 1 . - CDS 396291 - 397727 1312 ## COG0477 Permeases of the major facilitator superfamily + Prom 397953 - 398012 10.0 391 239 Tu 1 . + CDS 398111 - 399457 1035 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase + Term 399498 - 399552 17.0 - Term 399486 - 399540 16.2 392 240 Tu 1 . - CDS 399554 - 400861 954 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 401106 - 401165 5.5 + Prom 400787 - 400846 6.6 393 241 Op 1 3/0.051 + CDS 401074 - 401625 618 ## COG1704 Uncharacterized conserved protein 394 241 Op 2 . + CDS 401648 - 402649 897 ## COG0501 Zn-dependent protease with chaperone function 395 242 Tu 1 . + CDS 403034 - 404212 970 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases + Prom 404354 - 404413 3.6 396 243 Op 1 21/0.000 + CDS 404533 - 405579 1005 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 397 243 Op 2 24/0.000 + CDS 405595 - 406614 974 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 398 243 Op 3 17/0.000 + CDS 406631 - 407389 237 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 399 243 Op 4 . + CDS 407415 - 408446 883 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 400 243 Op 5 . + CDS 408453 - 409550 891 ## COG2055 Malate/L-lactate dehydrogenases 401 243 Op 6 . + CDS 409557 - 410861 1063 ## COG2873 O-acetylhomoserine sulfhydrylase 402 243 Op 7 . + CDS 410872 - 412026 895 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 403 243 Op 8 1/0.178 + CDS 412036 - 413229 814 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 404 243 Op 9 . + CDS 413226 - 414224 923 ## COG1052 Lactate dehydrogenase and related dehydrogenases 405 243 Op 10 . + CDS 414241 - 414660 503 ## COG0456 Acetyltransferases 406 244 Tu 1 . + CDS 415044 - 416042 699 ## COG1893 Ketopantoate reductase + Prom 416443 - 416502 4.8 407 245 Op 1 34/0.000 + CDS 416552 - 417250 511 ## COG0765 ABC-type amino acid transport system, permease component 408 245 Op 2 16/0.000 + CDS 417263 - 418018 527 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 409 245 Op 3 . + CDS 418018 - 418833 914 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Prom 419106 - 419165 5.2 410 246 Tu 1 . + CDS 419245 - 420243 957 ## COG1893 Ketopantoate reductase 411 247 Tu 1 . - CDS 420248 - 421090 670 ## COG0077 Prephenate dehydratase - Prom 421126 - 421185 5.4 + Prom 421258 - 421317 8.4 412 248 Op 1 . + CDS 421384 - 422319 652 ## COG1073 Hydrolases of the alpha/beta superfamily + Term 422352 - 422404 1.3 + Prom 422322 - 422381 1.9 413 248 Op 2 . + CDS 422412 - 422729 57 ## + Prom 422733 - 422792 5.8 414 248 Op 3 . + CDS 422816 - 423232 556 ## Lbuc_0185 hypothetical protein + Term 423290 - 423331 6.5 + Prom 423326 - 423385 7.8 415 249 Tu 1 . + CDS 423440 - 424042 658 ## COG3560 Predicted oxidoreductase related to nitroreductase + Term 424076 - 424136 13.0 + Prom 424096 - 424155 4.0 416 250 Tu 1 . + CDS 424216 - 425325 558 ## COG4292 Predicted membrane protein - Term 425355 - 425401 6.2 417 251 Tu 1 . - CDS 425416 - 426387 1072 ## COG1052 Lactate dehydrogenase and related dehydrogenases + Prom 427023 - 427082 3.7 418 252 Tu 1 . + CDS 427103 - 428506 1007 ## COG1114 Branched-chain amino acid permeases + Term 428530 - 428571 7.1 419 253 Tu 1 . - CDS 428584 - 428670 59 ## - Prom 428800 - 428859 4.9 + Prom 428510 - 428569 3.0 420 254 Tu 1 . + CDS 428645 - 428857 95 ## gi|227511277|ref|ZP_03941326.1| hypothetical protein HMPREF0497_0399 + Term 428879 - 428925 1.2 - Term 428865 - 428913 10.2 421 255 Tu 1 . - CDS 428937 - 429554 632 ## COG1335 Amidases related to nicotinamidase - Prom 429612 - 429671 7.3 + Prom 429556 - 429615 4.1 422 256 Op 1 . + CDS 429710 - 430438 614 ## COG5632 N-acetylmuramoyl-L-alanine amidase + Prom 430492 - 430551 10.4 423 256 Op 2 . + CDS 430595 - 431503 812 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin + Term 431568 - 431608 12.2 - Term 431542 - 431607 23.0 424 257 Tu 1 . - CDS 431631 - 432350 683 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) - Prom 432485 - 432544 5.3 - Term 432520 - 432569 11.1 425 258 Op 1 . - CDS 432587 - 433753 966 ## Lbuc_0200 glycoside hydrolase family 25 426 258 Op 2 . - CDS 433828 - 434025 222 ## Lbuc_0201 hypothetical protein 427 258 Op 3 . - CDS 434082 - 435032 718 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 435088 - 435147 2.5 + Prom 438015 - 438074 5.3 428 259 Tu 1 . + CDS 438137 - 439321 975 ## COG0477 Permeases of the major facilitator superfamily + Term 439431 - 439472 2.2 + Prom 439398 - 439457 7.2 429 260 Op 1 . + CDS 439509 - 441395 1620 ## COG4289 Uncharacterized protein conserved in bacteria + Term 441416 - 441465 2.1 + Prom 441565 - 441624 4.7 430 260 Op 2 . + CDS 441663 - 442658 977 ## COG1609 Transcriptional regulators + Term 442711 - 442764 11.5 - Term 442579 - 442610 -1.0 431 261 Tu 1 . - CDS 442803 - 443702 614 ## Pjdr2_5115 hypothetical protein + Prom 443924 - 443983 7.2 432 262 Op 1 . + CDS 444056 - 445867 1178 ## COG3250 Beta-galactosidase/beta-glucuronidase + Term 445894 - 445945 3.2 433 262 Op 2 . + CDS 446000 - 448546 1748 ## Lbuc_0208 glycoside hydrolase family 59 + Term 448566 - 448628 20.0 - Term 448552 - 448614 20.0 434 263 Tu 1 . - CDS 448622 - 449206 541 ## COG1611 Predicted Rossmann fold nucleotide-binding protein - Prom 449318 - 449377 6.0 + Prom 449259 - 449318 10.5 435 264 Tu 1 . + CDS 449345 - 450415 827 ## COG0006 Xaa-Pro aminopeptidase + Prom 450762 - 450821 8.8 436 265 Op 1 3/0.051 + CDS 450855 - 451418 535 ## COG4720 Predicted membrane protein 437 265 Op 2 34/0.000 + CDS 451422 - 453155 1304 ## COG1122 ABC-type cobalt transport system, ATPase component 438 265 Op 3 . + CDS 453112 - 453969 579 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 439 265 Op 4 . + CDS 454042 - 454767 589 ## COG2071 Predicted glutamine amidotransferases + Term 454771 - 454826 4.3 + Prom 454790 - 454849 5.9 440 266 Op 1 . + CDS 454878 - 455228 376 ## lp_2566 hypothetical protein 441 266 Op 2 . + CDS 455383 - 456168 581 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Term 456238 - 456284 11.2 - Term 456219 - 456277 12.0 442 267 Tu 1 . - CDS 456295 - 457179 652 ## COG3001 Fructosamine-3-kinase - Prom 457321 - 457380 4.4 + Prom 457214 - 457273 4.9 443 268 Tu 1 . + CDS 457307 - 458680 939 ## COG2918 Gamma-glutamylcysteine synthetase + Prom 460165 - 460224 80.3 444 269 Tu 1 . + CDS 460446 - 461783 945 ## COG2918 Gamma-glutamylcysteine synthetase 445 270 Op 1 . - CDS 461889 - 462683 688 ## COG2071 Predicted glutamine amidotransferases 446 270 Op 2 . - CDS 462761 - 464137 930 ## COG2918 Gamma-glutamylcysteine synthetase - Prom 464188 - 464247 5.2 447 271 Tu 1 . - CDS 464403 - 464981 478 ## gi|227508292|ref|ZP_03938341.1| possible replication protein B - Prom 465058 - 465117 7.3 + Prom 465031 - 465090 4.6 448 272 Op 1 35/0.000 + CDS 465289 - 467046 239 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 449 272 Op 2 . + CDS 467039 - 468832 236 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Term 468856 - 468894 8.5 - Term 468844 - 468882 8.5 450 273 Op 1 4/0.046 - CDS 468902 - 469336 519 ## COG0071 Molecular chaperone (small heat shock protein) - Prom 469360 - 469419 4.1 451 273 Op 2 . - CDS 469457 - 469891 451 ## COG0071 Molecular chaperone (small heat shock protein) - Prom 470043 - 470102 5.7 + Prom 469941 - 470000 6.9 452 274 Op 1 . + CDS 470218 - 470742 340 ## COG1309 Transcriptional regulator + Prom 470899 - 470958 5.8 453 274 Op 2 . + CDS 471022 - 472716 1389 ## COG4716 Myosin-crossreactive antigen + Term 472751 - 472801 9.2 + Prom 472839 - 472898 6.2 454 275 Tu 1 . + CDS 472962 - 474605 1349 ## gi|227508300|ref|ZP_03938349.1| conserved hypothetical protein - Term 477490 - 477526 3.0 455 276 Tu 1 . - CDS 477561 - 478592 800 ## COG0451 Nucleoside-diphosphate-sugar epimerases - Prom 478805 - 478864 6.0 + Prom 478596 - 478655 7.2 456 277 Tu 1 . + CDS 478685 - 479341 435 ## gi|227508302|ref|ZP_03938351.1| TetR family transcriptional regulator - Term 479334 - 479372 7.2 457 278 Op 1 1/0.178 - CDS 479400 - 480104 670 ## COG1814 Uncharacterized membrane protein 458 278 Op 2 . - CDS 480140 - 480829 768 ## COG1814 Uncharacterized membrane protein - Prom 480992 - 481051 9.4 + Prom 480886 - 480945 10.7 459 279 Tu 1 . + CDS 481061 - 481828 598 ## COG0778 Nitroreductase + Prom 482154 - 482213 6.3 460 280 Op 1 17/0.000 + CDS 482240 - 482899 506 ## COG0765 ABC-type amino acid transport system, permease component 461 280 Op 2 34/0.000 + CDS 482925 - 483569 475 ## COG0765 ABC-type amino acid transport system, permease component 462 280 Op 3 16/0.000 + CDS 483562 - 484302 470 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 463 280 Op 4 2/0.096 + CDS 484333 - 485181 915 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 485207 - 485258 10.0 464 281 Tu 1 . + CDS 485616 - 486884 1101 ## COG0477 Permeases of the major facilitator superfamily + Term 486904 - 486949 7.1 - Term 486990 - 487048 2.6 465 282 Tu 1 . - CDS 487097 - 487852 694 ## COG0710 3-dehydroquinate dehydratase - Prom 487877 - 487936 8.1 + Prom 487803 - 487862 6.5 466 283 Tu 1 . + CDS 488022 - 488834 733 ## COG4377 Predicted membrane protein + Term 488877 - 488926 2.6 467 284 Tu 1 . - CDS 488943 - 489995 793 ## COG0726 Predicted xylanase/chitin deacetylase - Prom 490139 - 490198 8.3 + Prom 490429 - 490488 4.4 468 285 Tu 1 . + CDS 490554 - 491819 1099 ## COG1228 Imidazolonepropionase and related amidohydrolases 469 286 Op 1 . + CDS 492166 - 492480 244 ## lp_2038 transport protein 470 286 Op 2 5/0.036 + CDS 492493 - 493662 987 ## COG0082 Chorismate synthase 471 286 Op 3 6/0.030 + CDS 493674 - 494978 1165 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase 472 286 Op 4 . + CDS 494996 - 495853 669 ## COG0287 Prephenate dehydrogenase 473 286 Op 5 1/0.178 + CDS 495860 - 496366 464 ## COG0703 Shikimate kinase 474 286 Op 6 . + CDS 496396 - 497268 636 ## COG0169 Shikimate 5-dehydrogenase + Term 497306 - 497335 -0.2 + Prom 497277 - 497336 7.1 475 287 Tu 1 . + CDS 497505 - 498017 567 ## COG4732 Predicted membrane protein + Term 498069 - 498111 8.5 - Term 498055 - 498099 5.1 476 288 Op 1 . - CDS 498122 - 499486 979 ## COG0738 Fucose permease 477 288 Op 2 . - CDS 499540 - 499935 370 ## COG1869 ABC-type ribose transport system, auxiliary component - Prom 499998 - 500057 6.9 - Term 500048 - 500102 4.1 478 289 Tu 1 . - CDS 500116 - 501135 893 ## COG1609 Transcriptional regulators - Prom 501208 - 501267 8.8 + Prom 501202 - 501261 9.3 479 290 Tu 1 . + CDS 501492 - 503450 1498 ## COG2211 Na+/melibiose symporter and related transporters + Term 503487 - 503544 13.1 + Prom 503489 - 503548 7.9 480 291 Op 1 . + CDS 503747 - 503932 183 ## + Term 503994 - 504048 7.0 + Prom 503993 - 504052 8.4 481 291 Op 2 . + CDS 504176 - 505627 1110 ## COG0477 Permeases of the major facilitator superfamily + Term 505644 - 505697 16.5 - Term 505623 - 505692 26.2 482 292 Op 1 . - CDS 505708 - 507558 1574 ## Lbuc_0252 hypothetical protein - Prom 507592 - 507651 5.1 483 292 Op 2 . - CDS 507730 - 507945 92 ## gi|227508330|ref|ZP_03938379.1| hypothetical protein HMPREF0496_0493 - Prom 508080 - 508139 5.2 + Prom 508320 - 508379 8.4 484 293 Tu 1 . + CDS 508419 - 509507 1113 ## COG3641 Predicted membrane protein, putative toxin regulator + Term 509526 - 509589 9.6 - Term 509523 - 509566 -0.8 485 294 Tu 1 . - CDS 509579 - 509935 502 ## Lbuc_0267 hypothetical protein 486 295 Op 1 . + CDS 510279 - 511052 937 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 487 295 Op 2 . + CDS 510958 - 511143 83 ## 488 295 Op 3 . + CDS 511191 - 511784 491 ## COG2461 Uncharacterized conserved protein + Term 511809 - 511880 23.0 - Term 511795 - 511866 16.3 489 296 Op 1 24/0.000 - CDS 511883 - 514948 2628 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 490 296 Op 2 . - CDS 514948 - 516009 772 ## COG0505 Carbamoylphosphate synthase small subunit - Prom 516163 - 516222 9.2 491 297 Op 1 15/0.000 + CDS 516576 - 517523 867 ## COG0540 Aspartate carbamoyltransferase, catalytic chain 492 297 Op 2 . + CDS 517591 - 518862 1121 ## COG0044 Dihydroorotase and related cyclic amidohydrolases + Term 518951 - 519015 13.1 - Term 518954 - 518986 -0.9 493 298 Tu 1 . - CDS 518988 - 519557 570 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 519608 - 519667 4.2 494 299 Tu 1 . - CDS 522266 - 522913 263 ## COG1396 Predicted transcriptional regulators + Prom 523135 - 523194 11.8 495 300 Tu 1 . + CDS 523275 - 523448 125 ## gi|227508342|ref|ZP_03938391.1| hypothetical protein HMPREF0496_0505 496 301 Tu 1 . - CDS 523465 - 524094 248 ## COG1396 Predicted transcriptional regulators - Prom 524201 - 524260 8.6 + Prom 524196 - 524255 9.8 497 302 Tu 1 . + CDS 524362 - 524562 164 ## gi|227508345|ref|ZP_03938394.1| hypothetical protein HMPREF0496_0508 + Term 524616 - 524666 5.2 498 303 Op 1 . + CDS 524675 - 526840 248 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 499 303 Op 2 . + CDS 526844 - 527335 370 ## LSL_1909 AbpD bacteriocin export accessory protein + Term 527427 - 527477 5.5 + Prom 527445 - 527504 3.9 500 304 Op 1 . + CDS 527525 - 527671 99 ## gi|227508348|ref|ZP_03938397.1| hypothetical protein HMPREF0496_0511 501 304 Op 2 . + CDS 527749 - 527967 232 ## gi|227508349|ref|ZP_03938398.1| hypothetical protein HMPREF0496_0512 + Prom 527970 - 528029 4.3 502 305 Tu 1 . + CDS 528169 - 528366 204 ## gi|227508351|ref|ZP_03938400.1| hypothetical protein HMPREF0496_0514 + Term 528425 - 528487 15.6 - Term 528417 - 528469 10.4 503 306 Tu 1 . - CDS 528637 - 528951 322 ## COG2076 Membrane transporters of cations and cationic drugs - Prom 529064 - 529123 7.5 504 307 Op 1 . - CDS 529125 - 529574 287 ## LAR_1321 hypothetical protein 505 307 Op 2 . - CDS 529571 - 529996 226 ## COG3279 Response regulator of the LytR/AlgR family - Prom 530106 - 530165 4.4 - Term 530128 - 530172 11.6 506 308 Op 1 6/0.030 - CDS 530190 - 531356 1279 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 507 308 Op 2 . - CDS 531369 - 532445 1026 ## COG1932 Phosphoserine aminotransferase - Prom 532572 - 532631 6.6 + Prom 532721 - 532780 6.5 508 309 Tu 1 . + CDS 532855 - 533484 539 ## COG0406 Fructose-2,6-bisphosphatase + Term 533703 - 533748 1.7 + Prom 533753 - 533812 3.7 509 310 Tu 1 . + CDS 533841 - 535496 1682 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 510 311 Tu 1 . - CDS 535604 - 536515 749 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase - Prom 536557 - 536616 3.4 + Prom 536479 - 536538 7.9 511 312 Op 1 . + CDS 536621 - 537331 312 ## PROTEIN SUPPORTED gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 + Prom 537333 - 537392 3.9 512 312 Op 2 . + CDS 537447 - 537833 394 ## COG0251 Putative translation initiation inhibitor, yjgF family + Term 537851 - 537895 5.1 - Term 537835 - 537886 9.2 513 313 Op 1 3/0.051 - CDS 537891 - 538535 507 ## COG1309 Transcriptional regulator 514 313 Op 2 45/0.000 - CDS 538552 - 539763 953 ## COG0842 ABC-type multidrug transport system, permease component 515 313 Op 3 . - CDS 539750 - 540481 280 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 540517 - 540576 6.7 516 314 Op 1 1/0.178 + CDS 540888 - 542060 1228 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 517 314 Op 2 . + CDS 542121 - 543113 958 ## COG1052 Lactate dehydrogenase and related dehydrogenases + Term 543124 - 543164 4.1 + Prom 543137 - 543196 8.2 518 315 Op 1 . + CDS 543222 - 543728 643 ## COG3467 Predicted flavin-nucleotide-binding protein 519 315 Op 2 . + CDS 543811 - 544851 824 ## COG0095 Lipoate-protein ligase A + Term 544875 - 544915 3.3 + Prom 544949 - 545008 7.2 520 316 Tu 1 . + CDS 545029 - 546876 229 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 546892 - 546938 8.5 - Term 547109 - 547167 5.6 521 317 Tu 1 . - CDS 547168 - 548109 407 ## Lbuc_0306 hypothetical protein - Prom 548144 - 548203 5.5 + Prom 547897 - 547956 4.8 522 318 Tu 1 . + CDS 548116 - 548313 96 ## - Term 548198 - 548244 2.4 523 319 Tu 1 . - CDS 548258 - 548698 380 ## COG0386 Glutathione peroxidase - Prom 548763 - 548822 6.3 524 320 Op 1 36/0.000 - CDS 548859 - 551471 1987 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 525 320 Op 2 . - CDS 551483 - 552184 310 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 552304 - 552363 4.6 526 321 Op 1 . + CDS 552548 - 553615 716 ## Lbuc_0307 hypothetical protein 527 321 Op 2 . + CDS 553643 - 554008 230 ## COG1694 Predicted pyrophosphatase + Term 554015 - 554072 13.3 + Prom 554075 - 554134 7.2 528 322 Op 1 1/0.178 + CDS 554271 - 554792 467 ## COG1309 Transcriptional regulator 529 322 Op 2 36/0.000 + CDS 554796 - 555860 962 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 530 322 Op 3 . + CDS 555864 - 556565 244 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) + Term 556579 - 556616 -0.4 + Prom 556698 - 556757 6.3 531 323 Tu 1 . + CDS 556846 - 557913 836 ## COG0095 Lipoate-protein ligase A + Prom 557916 - 557975 3.3 532 324 Op 1 . + CDS 558046 - 559446 1191 ## COG0015 Adenylosuccinate lyase 533 324 Op 2 . + CDS 559430 - 559738 403 ## COG0509 Glycine cleavage system H protein (lipoate-binding) + Term 559778 - 559814 1.0 - Term 559757 - 559811 5.5 534 325 Tu 1 . - CDS 559875 - 560378 552 ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 - Prom 560497 - 560556 6.3 + Prom 560493 - 560552 14.0 535 326 Op 1 . + CDS 560734 - 561060 132 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme + Prom 561155 - 561214 2.5 536 326 Op 2 . + CDS 561240 - 561971 500 ## lp_1483 hypothetical protein + Term 561987 - 562043 -0.9 537 327 Op 1 19/0.000 - CDS 562059 - 562712 664 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 538 327 Op 2 . - CDS 562727 - 563755 909 ## COG4585 Signal transduction histidine kinase - Prom 563821 - 563880 8.5 539 328 Tu 1 . - CDS 563964 - 564335 397 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism - Prom 564361 - 564420 5.6 + Prom 564223 - 564282 5.9 540 329 Op 1 2/0.096 + CDS 564375 - 565196 778 ## COG0447 Dihydroxynaphthoic acid synthase 541 329 Op 2 . + CDS 565223 - 566638 763 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 542 330 Op 1 . + CDS 566751 - 567257 342 ## lwe1147 hypothetical protein 543 330 Op 2 . + CDS 567291 - 568019 457 ## lin1110 hypothetical protein 544 330 Op 3 6/0.030 + CDS 568043 - 568801 742 ## COG0368 Cobalamin-5-phosphate synthase 545 330 Op 4 . + CDS 568813 - 569403 443 ## COG0406 Fructose-2,6-bisphosphatase + Prom 569513 - 569572 5.2 546 331 Tu 1 . + CDS 569592 - 570869 879 ## COG0477 Permeases of the major facilitator superfamily + Term 570899 - 570943 6.1 - Term 571207 - 571240 2.1 547 332 Tu 1 . - CDS 571250 - 571813 453 ## LVIS_0068 hypothetical protein - Prom 571879 - 571938 5.2 548 333 Op 1 . - CDS 571964 - 572806 367 ## COG0657 Esterase/lipase 549 333 Op 2 . - CDS 572822 - 574441 883 ## COG2508 Regulator of polyketide synthase expression - Prom 574589 - 574648 8.1 + Prom 574474 - 574533 8.2 550 334 Op 1 . + CDS 574697 - 577678 2665 ## COG0074 Succinyl-CoA synthetase, alpha subunit 551 334 Op 2 . + CDS 577682 - 578536 540 ## CAR_c00510 hypothetical protein + Term 578602 - 578641 -0.9 + Prom 578550 - 578609 2.6 552 335 Op 1 3/0.051 + CDS 578671 - 579921 1058 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 553 335 Op 2 . + CDS 579960 - 580919 871 ## COG0549 Carbamate kinase + Term 580945 - 580990 10.5 - Term 580929 - 580982 16.5 554 336 Op 1 . - CDS 581046 - 581699 451 ## COG1011 Predicted hydrolase (HAD superfamily) - Prom 581731 - 581790 5.2 - Term 581769 - 581805 2.4 555 336 Op 2 . - CDS 581831 - 583381 1478 ## COG1288 Predicted membrane protein - Prom 583408 - 583467 2.6 + Prom 583260 - 583319 5.1 556 337 Op 1 16/0.000 + CDS 583489 - 584787 913 ## COG0642 Signal transduction histidine kinase 557 337 Op 2 . + CDS 584784 - 585626 697 ## COG0784 FOG: CheY-like receiver 558 337 Op 3 . + CDS 585613 - 585819 66 ## + Prom 585822 - 585881 3.7 559 338 Op 1 3/0.051 + CDS 585939 - 586973 1058 ## COG0078 Ornithine carbamoyltransferase 560 338 Op 2 . + CDS 587010 - 588431 1230 ## COG0531 Amino acid transporters 561 338 Op 3 1/0.178 + CDS 588471 - 589568 981 ## COG2957 Peptidylarginine deiminase and related enzymes 562 338 Op 4 1/0.178 + CDS 589581 - 590531 994 ## COG0549 Carbamate kinase + Term 590573 - 590619 11.2 + Prom 590590 - 590649 3.7 563 339 Op 1 . + CDS 590671 - 591759 840 ## COG2957 Peptidylarginine deiminase and related enzymes 564 339 Op 2 . + CDS 591770 - 592561 578 ## COG1737 Transcriptional regulators + Term 592584 - 592634 8.4 - Term 592570 - 592620 9.2 565 340 Op 1 . - CDS 592678 - 593172 410 ## LCABL_09580 hypothetical protein 566 340 Op 2 . - CDS 593209 - 595107 1676 ## COG2217 Cation transport ATPase - Prom 595142 - 595201 4.4 + Prom 595100 - 595159 4.9 567 341 Tu 1 . + CDS 595292 - 595540 305 ## gi|227508417|ref|ZP_03938466.1| hypothetical protein HMPREF0496_0580 + Term 595576 - 595637 16.5 + Prom 595612 - 595671 2.8 568 342 Op 1 8/0.020 + CDS 595709 - 596149 290 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 569 342 Op 2 . + CDS 596152 - 596547 335 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 570 342 Op 3 . + CDS 596578 - 596955 289 ## cauri_0778 hypothetical protein + Term 596956 - 597008 14.0 + Prom 597353 - 597412 4.1 571 343 Tu 1 . + CDS 597485 - 598207 319 ## COG1266 Predicted metal-dependent membrane protease + Prom 598269 - 598328 3.8 572 344 Tu 1 . + CDS 598516 - 598737 158 ## gi|227508423|ref|ZP_03938472.1| hypothetical protein HMPREF0496_0586 + Term 598741 - 598789 3.1 - Term 598817 - 598860 -0.9 573 345 Tu 1 . - CDS 598865 - 599734 868 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Prom 599886 - 599945 7.5 + Prom 599840 - 599899 4.4 574 346 Op 1 11/0.000 + CDS 599947 - 601488 1190 ## COG0248 Exopolyphosphatase 575 346 Op 2 11/0.000 + CDS 601488 - 603662 1657 ## COG0855 Polyphosphate kinase 576 346 Op 3 . + CDS 603662 - 604606 815 ## COG0248 Exopolyphosphatase + Term 604657 - 604705 14.2 - Term 604651 - 604687 3.5 577 347 Op 1 . - CDS 604737 - 606905 1131 ## COG1511 Predicted membrane protein 578 347 Op 2 . - CDS 606937 - 607608 368 ## Lbuc_1808 hypothetical protein - Prom 607674 - 607733 5.7 579 348 Tu 1 . + CDS 607971 - 610130 1319 ## COG1511 Predicted membrane protein + Term 610186 - 610246 6.6 - Term 610181 - 610228 7.4 580 349 Tu 1 . - CDS 610247 - 610642 327 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family - Prom 610717 - 610776 7.2 + Prom 610798 - 610857 6.6 581 350 Tu 1 . + CDS 610892 - 612010 760 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 612026 - 612076 0.2 + Prom 612228 - 612287 6.1 582 351 Op 1 . + CDS 612367 - 612462 80 ## 583 351 Op 2 . + CDS 612452 - 612577 107 ## gi|227508434|ref|ZP_03938483.1| hypothetical protein HMPREF0496_0597 + Prom 612602 - 612661 7.2 584 352 Tu 1 . + CDS 612706 - 613410 621 ## COG3382 Uncharacterized conserved protein 585 353 Op 1 9/0.020 - CDS 613499 - 614389 831 ## COG0685 5,10-methylenetetrahydrofolate reductase 586 353 Op 2 . - CDS 614367 - 616652 1744 ## COG0620 Methionine synthase II (cobalamin-independent) - Prom 616751 - 616810 3.5 - Term 616737 - 616781 9.2 587 354 Tu 1 . - CDS 616815 - 617288 373 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis - Prom 617343 - 617402 5.4 - Term 617464 - 617522 1.8 588 355 Tu 1 . - CDS 617769 - 618884 806 ## COG0620 Methionine synthase II (cobalamin-independent) - Prom 618905 - 618964 4.4 + Prom 619392 - 619451 6.3 589 356 Tu 1 . + CDS 619485 - 620243 223 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Prom 620389 - 620448 5.6 590 357 Op 1 . + CDS 620605 - 621975 1270 ## COG1457 Purine-cytosine permease and related proteins 591 357 Op 2 . + CDS 621977 - 622432 249 ## Lbuc_0338 pentapeptide repeat-containing protein + Term 622492 - 622526 -0.7 592 358 Op 1 7/0.030 - CDS 622504 - 623664 691 ## COG0675 Transposase and inactivated derivatives 593 358 Op 2 . - CDS 623681 - 624118 199 ## COG1943 Transposase and inactivated derivatives - Prom 624144 - 624203 4.3 + Prom 624149 - 624208 3.3 594 359 Tu 1 . + CDS 624269 - 624454 196 ## Lbuc_0338 pentapeptide repeat-containing protein 595 360 Op 1 . + CDS 624835 - 625527 303 ## lhv_1954 ABC transporter 596 360 Op 2 . + CDS 625515 - 627176 196 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 597 360 Op 3 . + CDS 627230 - 627892 434 ## Lbuc_0341 putative metal ion ABC transporter 598 360 Op 4 . + CDS 627900 - 628949 1036 ## Lbuc_0342 hypothetical protein 599 360 Op 5 . + CDS 628973 - 629722 583 ## Lbuc_0343 hypothetical protein + Term 629808 - 629850 6.1 + Prom 629936 - 629995 7.4 600 361 Op 1 3/0.051 + CDS 630096 - 632729 2236 ## COG1048 Aconitase A 601 361 Op 2 4/0.046 + CDS 632754 - 633857 860 ## COG0372 Citrate synthase 602 361 Op 3 . + CDS 633871 - 635139 1110 ## COG0538 Isocitrate dehydrogenases + Term 635165 - 635236 16.2 - Term 635159 - 635216 13.1 603 362 Op 1 . - CDS 635225 - 635785 690 ## COG1045 Serine acetyltransferase 604 362 Op 2 8/0.020 - CDS 635751 - 636935 1081 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 605 362 Op 3 . - CDS 636973 - 637884 543 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 - Prom 637944 - 638003 3.6 + Prom 638354 - 638413 6.7 606 363 Tu 1 . + CDS 638457 - 639320 633 ## Lbuc_0347 helix-turn-helix domain-containing protein + Term 639324 - 639380 0.5 - Term 639260 - 639305 -0.8 607 364 Op 1 . - CDS 639357 - 639941 229 ## COG2365 Protein tyrosine/serine phosphatase 608 364 Op 2 . - CDS 639961 - 640194 109 ## gi|227508459|ref|ZP_03938508.1| hypothetical protein HMPREF0496_0622 - Prom 640224 - 640283 2.2 609 364 Op 3 . - CDS 640285 - 640875 351 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) - Prom 640929 - 640988 8.4 + Prom 640891 - 640950 9.3 610 365 Tu 1 . + CDS 640995 - 641459 385 ## COG1846 Transcriptional regulators + Prom 641561 - 641620 6.4 611 366 Op 1 . + CDS 641648 - 643246 1462 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family 612 366 Op 2 1/0.178 + CDS 643276 - 643725 608 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Prom 643765 - 643824 3.6 613 367 Tu 1 . + CDS 643872 - 645227 1113 ## COG0477 Permeases of the major facilitator superfamily + Term 645276 - 645309 3.1 + Prom 645310 - 645369 7.8 614 368 Tu 1 . + CDS 645545 - 646966 1575 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 647138 - 647182 9.4 - Term 647126 - 647170 -0.1 615 369 Tu 1 . - CDS 647193 - 648029 500 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 648193 - 648252 7.6 + Prom 648143 - 648202 4.9 616 370 Tu 1 . + CDS 648396 - 649991 1350 ## COG2211 Na+/melibiose symporter and related transporters + Prom 650005 - 650064 2.7 617 371 Op 1 . + CDS 650093 - 650452 283 ## Lbuc_0631 hypothetical protein 618 371 Op 2 . + CDS 650502 - 652553 1446 ## LC705_02793 hypothetical protein 619 371 Op 3 . + CDS 652597 - 652839 225 ## gi|227508470|ref|ZP_03938519.1| hypothetical protein HMPREF0496_0633 + Term 652882 - 652939 16.1 - Term 652870 - 652927 16.1 620 372 Op 1 . - CDS 652928 - 653824 872 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase 621 372 Op 2 . - CDS 653901 - 654377 262 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 654414 - 654473 7.4 - Term 654395 - 654443 9.3 622 373 Tu 1 . - CDS 654482 - 655867 1290 ## COG0004 Ammonia permease - Prom 656015 - 656074 7.9 - Term 656024 - 656076 10.5 623 374 Tu 1 . - CDS 656078 - 656722 654 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases - Prom 656746 - 656805 4.9 + Prom 656786 - 656845 3.9 624 375 Op 1 15/0.000 + CDS 656881 - 658791 1705 ## COG2217 Cation transport ATPase 625 375 Op 2 . + CDS 658821 - 659042 229 ## COG2608 Copper chaperone 626 375 Op 3 . + CDS 659054 - 659602 665 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) + Term 659624 - 659683 13.1 + Prom 659948 - 660007 6.5 627 376 Op 1 29/0.000 + CDS 660034 - 660525 592 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 628 376 Op 2 1/0.178 + CDS 660506 - 661639 695 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 629 376 Op 3 15/0.000 + CDS 661641 - 662381 777 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 630 376 Op 4 23/0.000 + CDS 662381 - 662644 391 ## COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component 631 376 Op 5 9/0.020 + CDS 662641 - 663327 636 ## COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain 632 376 Op 6 10/0.005 + CDS 663320 - 665554 1872 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 633 376 Op 7 13/0.000 + CDS 665539 - 666984 1324 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 634 376 Op 8 21/0.000 + CDS 666997 - 668013 738 ## PROTEIN SUPPORTED gi|149378138|ref|ZP_01895857.1| Ribosomal protein S7 635 376 Op 9 10/0.005 + CDS 668010 - 668600 507 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 636 376 Op 10 17/0.000 + CDS 668600 - 670129 1478 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) + Term 670165 - 670224 11.1 + Prom 670172 - 670231 5.2 637 376 Op 11 . + CDS 670347 - 671591 1080 ## COG0151 Phosphoribosylamine-glycine ligase + Term 671633 - 671697 20.5 - Term 671626 - 671681 11.4 638 377 Tu 1 . - CDS 671707 - 672096 459 ## SPSINT_2261 4-oxalocrotonate tautomerase-like protein - Prom 672146 - 672205 2.4 - Term 672150 - 672195 4.4 639 378 Op 1 . - CDS 672211 - 673104 620 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 673127 - 673186 1.6 640 378 Op 2 . - CDS 673191 - 673628 298 ## EF1089 hypothetical protein 641 378 Op 3 . - CDS 673612 - 674007 291 ## gi|227508492|ref|ZP_03938541.1| hypothetical protein HMPREF0496_0655 - Prom 674076 - 674135 6.5 - Term 674180 - 674229 3.1 642 379 Tu 1 . - CDS 674266 - 675321 929 ## COG2017 Galactose mutarotase and related enzymes - Term 676000 - 676046 7.2 643 380 Tu 1 . - CDS 676129 - 677370 1240 ## COG0477 Permeases of the major facilitator superfamily - Prom 677421 - 677480 6.5 644 381 Op 1 . - CDS 677489 - 677854 203 ## Lbuc_0381 PemK family protein 645 381 Op 2 . - CDS 677829 - 678059 236 ## Lbuc_0382 hypothetical protein - Prom 678090 - 678149 4.3 + Prom 678193 - 678252 4.9 646 382 Op 1 9/0.020 + CDS 678405 - 679124 728 ## COG0284 Orotidine-5'-phosphate decarboxylase 647 382 Op 2 1/0.178 + CDS 679114 - 679767 702 ## COG0461 Orotate phosphoribosyltransferase 648 382 Op 3 . + CDS 679754 - 680701 884 ## COG0167 Dihydroorotate dehydrogenase + Term 680751 - 680791 5.9 + Prom 680825 - 680884 6.6 649 383 Op 1 . + CDS 680924 - 681277 330 ## gi|227508502|ref|ZP_03938551.1| conserved hypothetical protein + Term 681280 - 681333 -0.3 650 383 Op 2 . + CDS 681358 - 681981 212 ## gi|227508503|ref|ZP_03938552.1| hypothetical protein HMPREF0496_0666 651 383 Op 3 . + CDS 681968 - 682204 136 ## gi|227508504|ref|ZP_03938553.1| hypothetical protein HMPREF0496_0667 + Term 682213 - 682256 -0.1 + Prom 682221 - 682280 7.8 652 384 Tu 1 . + CDS 682306 - 684831 1938 ## COG0178 Excinuclease ATPase subunit + Prom 684838 - 684897 2.8 653 385 Tu 1 . + CDS 684952 - 685911 830 ## COG1482 Phosphomannose isomerase - Term 685946 - 685994 3.1 654 386 Op 1 36/0.000 - CDS 686026 - 687951 1235 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 655 386 Op 2 . - CDS 687951 - 688712 287 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 688918 - 688977 80.4 656 387 Tu 1 . - CDS 690041 - 690253 174 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 690283 - 690342 2.9 657 388 Tu 1 . - CDS 690363 - 690989 649 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 691029 - 691088 6.4 - Term 691038 - 691092 12.8 658 389 Tu 1 . - CDS 691116 - 692519 1322 ## COG0477 Permeases of the major facilitator superfamily - Prom 692554 - 692613 3.4 + Prom 692831 - 692890 7.5 659 390 Tu 1 . + CDS 692914 - 694080 793 ## COG1940 Transcriptional regulator/sugar kinase + Term 694109 - 694153 1.2 - Term 694094 - 694141 7.3 660 391 Tu 1 . - CDS 694174 - 694977 675 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 695012 - 695071 7.8 + Prom 695014 - 695073 6.5 661 392 Tu 1 . + CDS 695145 - 697064 1262 ## Tthe_0363 parallel beta-helix repeat + Prom 697082 - 697141 5.0 662 393 Op 1 . + CDS 697204 - 698511 1329 ## COG0477 Permeases of the major facilitator superfamily + Prom 698530 - 698589 5.5 663 393 Op 2 . + CDS 698617 - 699945 1345 ## COG5520 O-Glycosyl hydrolase + Term 699972 - 700022 10.2 + Prom 700001 - 700060 6.5 664 394 Tu 1 . + CDS 700109 - 702124 1826 ## MPTP_1982 hypothetical protein + Term 702157 - 702200 9.3 + Prom 702134 - 702193 5.9 665 395 Op 1 . + CDS 702235 - 702570 347 ## Lbuc_1917 cytidyltransferase-like domain-containing protein (EC:2.7.7.2) + Prom 702576 - 702635 6.0 666 395 Op 2 . + CDS 702664 - 702903 201 ## gi|227508519|ref|ZP_03938568.1| conserved hypothetical protein 667 395 Op 3 . + CDS 702977 - 705346 1788 ## LVIS_0489 hypothetical protein + Term 705352 - 705405 8.5 + Prom 705452 - 705511 6.1 668 396 Tu 1 . + CDS 705571 - 707493 1599 ## Pmob_0233 putative outer membrane protein + Term 707639 - 707688 13.2 669 397 Op 1 . - CDS 707525 - 707740 71 ## gi|227508522|ref|ZP_03938571.1| hypothetical protein HMPREF0496_0685 670 397 Op 2 . - CDS 707740 - 708534 720 ## COG0730 Predicted permeases - Prom 708556 - 708615 2.3 671 398 Tu 1 . - CDS 708675 - 709673 718 ## COG2957 Peptidylarginine deiminase and related enzymes - Prom 709698 - 709757 9.8 - Term 709841 - 709897 14.2 672 399 Op 1 . - CDS 709903 - 711048 751 ## COG2814 Arabinose efflux permease - Prom 711152 - 711211 5.2 - Term 711211 - 711267 3.5 673 399 Op 2 . - CDS 711293 - 712690 1056 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 712720 - 712779 10.2 - Term 712917 - 712968 2.4 674 400 Tu 1 . - CDS 713180 - 713629 271 ## COG1522 Transcriptional regulators - Prom 713727 - 713786 5.3 + Prom 713732 - 713791 8.3 675 401 Tu 1 . + CDS 713849 - 715186 1273 ## COG2115 Xylose isomerase + Term 715231 - 715271 3.5 676 402 Tu 1 . + CDS 717027 - 718250 1151 ## COG0477 Permeases of the major facilitator superfamily + Term 718289 - 718343 15.1 + Prom 718425 - 718484 5.8 677 403 Tu 1 . + CDS 718640 - 719101 477 ## Lbuc_2217 hypothetical protein + Term 719118 - 719159 9.5 + Prom 719143 - 719202 5.3 678 404 Tu 1 . + CDS 719320 - 719781 420 ## Lbuc_2217 hypothetical protein + Term 719787 - 719841 14.2 + Prom 719793 - 719852 2.5 679 405 Tu 1 . + CDS 719878 - 720444 423 ## COG2135 Uncharacterized conserved protein 680 406 Tu 1 . - CDS 720549 - 720719 57 ## - Prom 720933 - 720992 3.0 + Prom 720497 - 720556 8.8 681 407 Tu 1 . + CDS 720674 - 722011 1481 ## Lbuc_0400 hypothetical protein + Term 722037 - 722070 5.4 - Term 722017 - 722064 10.6 682 408 Tu 1 . - CDS 722084 - 724297 1816 ## COG3345 Alpha-galactosidase - Prom 724369 - 724428 7.2 + Prom 724335 - 724394 6.2 683 409 Tu 1 . + CDS 724529 - 725356 754 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 725398 - 725456 17.8 684 410 Tu 1 . - CDS 725700 - 726290 359 ## COG1309 Transcriptional regulator - Prom 726365 - 726424 3.8 + Prom 726324 - 726383 3.4 685 411 Tu 1 . + CDS 726413 - 727054 608 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Term 727152 - 727189 -0.2 + Prom 727783 - 727842 7.7 686 412 Tu 1 . + CDS 727910 - 728080 221 ## gi|227508540|ref|ZP_03938589.1| hypothetical protein HMPREF0496_0703 - Term 728515 - 728541 -1.0 687 413 Tu 1 . - CDS 728650 - 728826 161 ## gi|227508541|ref|ZP_03938590.1| hypothetical protein HMPREF0496_0704 - Prom 729009 - 729068 7.5 + Prom 728998 - 729057 11.2 688 414 Tu 1 . + CDS 729289 - 730614 1168 ## COG2211 Na+/melibiose symporter and related transporters + Term 730647 - 730682 4.4 + Prom 730660 - 730719 5.1 689 415 Op 1 4/0.046 + CDS 730769 - 733645 2132 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 690 415 Op 2 27/0.000 + CDS 733661 - 735259 1413 ## COG0286 Type I restriction-modification system methyltransferase subunit 691 415 Op 3 . + CDS 735252 - 736469 577 ## COG0732 Restriction endonuclease S subunits + Term 736491 - 736523 0.9 + Prom 736520 - 736579 2.1 692 416 Tu 1 . + CDS 736602 - 737540 663 ## COG3586 Uncharacterized conserved protein 693 417 Tu 1 . - CDS 737713 - 738303 165 ## COG0732 Restriction endonuclease S subunits - Prom 738380 - 738439 7.5 + Prom 738148 - 738207 6.8 694 418 Tu 1 . + CDS 738413 - 739135 446 ## gi|227508548|ref|ZP_03938597.1| hypothetical protein HMPREF0496_0711 + Term 739200 - 739245 3.0 + Prom 739142 - 739201 3.9 695 419 Tu 1 . + CDS 739255 - 740172 432 ## COG0582 Integrase - Term 740066 - 740114 1.4 696 420 Tu 1 . - CDS 740159 - 740572 72 ## COG0732 Restriction endonuclease S subunits - Prom 740777 - 740836 7.8 + Prom 740759 - 740818 7.1 697 421 Op 1 . + CDS 740972 - 741757 290 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 698 421 Op 2 . + CDS 741744 - 741872 72 ## 699 421 Op 3 . + CDS 741835 - 742470 639 ## COG1573 Uracil-DNA glycosylase + Term 742561 - 742612 7.1 + Prom 742962 - 743021 5.6 700 422 Op 1 . + CDS 743156 - 744364 637 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 701 422 Op 2 . + CDS 744449 - 744592 117 ## gi|227508555|ref|ZP_03938604.1| D-Ala-teichoic acid biosynthesis protein 702 422 Op 3 6/0.030 + CDS 744607 - 746133 1140 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 703 422 Op 4 7/0.030 + CDS 746130 - 747347 801 ## COG1696 Predicted membrane protein involved in D-alanine export 704 422 Op 5 6/0.030 + CDS 747387 - 747623 324 ## COG0236 Acyl carrier protein 705 422 Op 6 . + CDS 747620 - 748912 709 ## COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) 706 422 Op 7 . + CDS 748945 - 750240 1099 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 750286 - 750338 19.1 - Term 750272 - 750324 19.1 707 423 Tu 1 . - CDS 750328 - 750813 378 ## COG4990 Uncharacterized protein conserved in bacteria - Prom 750905 - 750964 6.9 + Prom 750812 - 750871 6.7 708 424 Tu 1 . + CDS 751062 - 752225 813 ## COG0406 Fructose-2,6-bisphosphatase + Term 752299 - 752345 7.4 - Term 752282 - 752338 14.6 709 425 Op 1 1/0.178 - CDS 752348 - 752656 340 ## COG0509 Glycine cleavage system H protein (lipoate-binding) 710 425 Op 2 . - CDS 752662 - 753669 837 ## COG0095 Lipoate-protein ligase A - Prom 753848 - 753907 7.1 + Prom 753792 - 753851 5.2 711 426 Tu 1 . + CDS 753901 - 754458 411 ## COG1376 Uncharacterized protein conserved in bacteria + Term 754470 - 754522 16.1 - Term 754458 - 754509 12.1 712 427 Tu 1 . - CDS 754586 - 754903 317 ## Lbuc_0417 glycine cleavage H-protein - Prom 755069 - 755128 3.2 - Term 755094 - 755141 -0.5 713 428 Tu 1 . - CDS 755162 - 756007 856 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 756064 - 756123 1.8 714 429 Op 1 7/0.030 - CDS 756125 - 757585 957 ## COG3428 Predicted membrane protein 715 429 Op 2 . - CDS 757575 - 758054 237 ## COG3402 Uncharacterized conserved protein - Prom 758197 - 758256 5.9 + Prom 758131 - 758190 6.2 716 430 Op 1 18/0.000 + CDS 758291 - 759424 949 ## COG0477 Permeases of the major facilitator superfamily + Term 759471 - 759510 4.0 + Prom 759500 - 759559 7.2 717 430 Op 2 4/0.046 + CDS 759619 - 760194 445 ## COG1846 Transcriptional regulators 718 430 Op 3 . + CDS 760206 - 761966 1399 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 762065 - 762128 12.4 - Term 762061 - 762106 8.2 719 431 Op 1 19/0.000 - CDS 762169 - 762774 631 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 720 431 Op 2 6/0.030 - CDS 762771 - 763871 761 ## COG4585 Signal transduction histidine kinase 721 431 Op 3 45/0.000 - CDS 763849 - 764625 669 ## COG0842 ABC-type multidrug transport system, permease component 722 431 Op 4 . - CDS 764627 - 765514 631 ## COG1131 ABC-type multidrug transport system, ATPase component - Prom 765617 - 765676 6.4 + Prom 765497 - 765556 5.2 723 432 Op 1 11/0.000 + CDS 765786 - 766559 239 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 766607 - 766645 6.9 + Prom 766680 - 766739 5.5 724 432 Op 2 . + CDS 766850 - 767374 394 ## COG1309 Transcriptional regulator + Prom 767392 - 767451 10.1 725 433 Op 1 1/0.178 + CDS 767576 - 767821 348 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 726 433 Op 2 1/0.178 + CDS 767836 - 768711 756 ## COG0320 Lipoate synthase 727 433 Op 3 . + CDS 768708 - 769703 699 ## COG0095 Lipoate-protein ligase A + Term 769712 - 769775 5.2 + Prom 769776 - 769835 3.8 728 434 Tu 1 . + CDS 769865 - 770758 859 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 770857 - 770913 14.1 - Term 770845 - 770900 1.3 729 435 Tu 1 . - CDS 770905 - 771258 142 ## gi|227508583|ref|ZP_03938632.1| hypothetical protein HMPREF0496_0746 - Prom 771457 - 771516 8.0 + Prom 771560 - 771619 8.4 730 436 Op 1 4/0.046 + CDS 771664 - 772584 279 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 731 436 Op 2 . + CDS 772586 - 774193 1494 ## COG3559 Putative exporter of polyketide antibiotics 732 436 Op 3 . + CDS 774241 - 774879 558 ## COG1309 Transcriptional regulator + Term 774912 - 774972 14.5 - Term 774898 - 774960 11.1 733 437 Tu 1 . - CDS 775080 - 776222 1104 ## gi|227508587|ref|ZP_03938636.1| hypothetical protein HMPREF0496_0750 - Prom 776290 - 776349 6.5 734 438 Tu 1 . - CDS 776353 - 776733 155 ## gi|227508588|ref|ZP_03938637.1| conserved hypothetical protein + Prom 776816 - 776875 5.9 735 439 Op 1 . + CDS 777073 - 777732 508 ## Lbuc_0434 hypothetical protein 736 439 Op 2 . + CDS 777744 - 778415 512 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases + Term 778438 - 778493 8.3 737 440 Op 1 . - CDS 778354 - 778590 99 ## 738 440 Op 2 . - CDS 778568 - 779236 616 ## COG0819 Putative transcription activator + Prom 779685 - 779744 7.4 739 441 Op 1 3/0.051 + CDS 779786 - 781393 1556 ## COG1070 Sugar (pentulose and hexulose) kinases 740 441 Op 2 . + CDS 781414 - 782142 875 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases + Term 782228 - 782274 8.9 + Prom 782282 - 782341 4.2 741 442 Op 1 . + CDS 782362 - 783201 681 ## COG3548 Predicted integral membrane protein + Prom 783205 - 783264 6.3 742 442 Op 2 . + CDS 783300 - 784040 771 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Term 784089 - 784141 6.5 + Prom 784046 - 784105 4.7 743 443 Tu 1 . + CDS 784252 - 785556 723 ## COG1686 D-alanyl-D-alanine carboxypeptidase + Term 785574 - 785616 2.0 + Prom 786135 - 786194 7.9 744 444 Op 1 35/0.000 + CDS 786228 - 787508 1394 ## COG1653 ABC-type sugar transport system, periplasmic component 745 444 Op 2 38/0.000 + CDS 787495 - 788439 735 ## COG1175 ABC-type sugar transport systems, permease components 746 444 Op 3 21/0.000 + CDS 788429 - 789250 524 ## COG0395 ABC-type sugar transport system, permease component 747 444 Op 4 2/0.096 + CDS 789261 - 790379 841 ## COG3839 ABC-type sugar transport systems, ATPase components 748 444 Op 5 . + CDS 790385 - 791254 662 ## COG1409 Predicted phosphohydrolases + Term 791348 - 791393 5.1 749 445 Tu 1 . - CDS 791265 - 791795 362 ## PROTEIN SUPPORTED gi|28378935|ref|NP_785827.1| ribosomal protein acetylating enzyme - Prom 791994 - 792053 5.2 + Prom 791783 - 791842 6.0 750 446 Op 1 . + CDS 791870 - 792502 496 ## COG4912 Predicted DNA alkylation repair enzyme + Term 792534 - 792568 1.2 + Prom 792571 - 792630 6.6 751 446 Op 2 . + CDS 792670 - 793224 355 ## COG1396 Predicted transcriptional regulators + Term 793244 - 793285 10.6 - Term 793218 - 793284 25.0 752 447 Op 1 . - CDS 793297 - 793488 228 ## gi|227508606|ref|ZP_03938655.1| hypothetical protein HMPREF0496_0769 - Prom 793626 - 793685 7.7 753 447 Op 2 . - CDS 793836 - 794027 81 ## - Prom 794202 - 794261 5.7 754 448 Op 1 . + CDS 794051 - 795562 1055 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 755 448 Op 2 . + CDS 795628 - 796107 255 ## gi|227508608|ref|ZP_03938657.1| hypothetical protein HMPREF0496_0771 + Term 796147 - 796201 15.1 - Term 796135 - 796188 12.5 756 449 Op 1 21/0.000 - CDS 796199 - 797632 1090 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 757 449 Op 2 . - CDS 797645 - 802108 3290 ## COG0069 Glutamate synthase domain 2 - Prom 802174 - 802233 11.2 758 450 Op 1 41/0.000 + CDS 802499 - 803308 847 ## COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component 759 450 Op 2 24/0.000 + CDS 803310 - 804602 1146 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 760 450 Op 3 19/0.000 + CDS 804583 - 805839 1091 ## COG0520 Selenocysteine lyase 761 450 Op 4 6/0.030 + CDS 805808 - 806263 476 ## COG0822 NifU homolog involved in Fe-S cluster formation 762 450 Op 5 . + CDS 806256 - 807659 1238 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component + Term 807695 - 807752 13.0 + Prom 807802 - 807861 1.8 763 451 Tu 1 . + CDS 807963 - 808283 434 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme + Term 808329 - 808379 7.3 - Term 808435 - 808477 3.5 764 452 Tu 1 . - CDS 808510 - 808737 301 ## gi|227508617|ref|ZP_03938666.1| hypothetical protein HMPREF0496_0780 - Prom 808784 - 808843 1.6 - Term 808814 - 808857 2.5 765 453 Tu 1 . - CDS 808871 - 809533 534 ## COG0819 Putative transcription activator - Prom 809621 - 809680 7.1 - Term 809664 - 809711 5.2 766 454 Op 1 . - CDS 809715 - 810530 600 ## Lbuc_0452 DNA/RNA non-specific endonuclease - Term 810543 - 810586 5.2 767 454 Op 2 . - CDS 810641 - 811594 913 ## COG4989 Predicted oxidoreductase - Prom 811621 - 811680 10.6 + Prom 811894 - 811953 6.2 768 455 Tu 1 . + CDS 812050 - 812667 193 ## PROTEIN SUPPORTED gi|154175107|ref|YP_001408238.1| ribosomal protein L22 + Term 812668 - 812722 13.1 + Prom 812673 - 812732 7.1 769 456 Tu 1 . + CDS 812834 - 815653 1982 ## COG0474 Cation transport ATPase + Term 815800 - 815849 4.3 770 457 Tu 1 . - CDS 815670 - 816455 564 ## PROTEIN SUPPORTED gi|239830964|ref|ZP_04679293.1| Ribosomal protein L11 methyltransferase - Prom 816546 - 816605 7.8 - Term 816484 - 816518 -0.1 771 458 Tu 1 . - CDS 816643 - 818121 1403 ## COG0477 Permeases of the major facilitator superfamily - Prom 818311 - 818370 5.6 - Term 818349 - 818403 16.5 772 459 Tu 1 . - CDS 818421 - 819608 1196 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family - Prom 819735 - 819794 6.8 + Prom 819561 - 819620 4.3 773 460 Tu 1 . + CDS 819760 - 820134 444 ## COG1733 Predicted transcriptional regulators + Term 820186 - 820227 10.6 - Term 820164 - 820224 19.1 774 461 Op 1 . - CDS 820239 - 820556 383 ## gi|227508627|ref|ZP_03938676.1| hypothetical protein HMPREF0496_0790 - Prom 820595 - 820654 3.3 775 461 Op 2 . - CDS 820661 - 821779 715 ## COG4767 Glycopeptide antibiotics resistance protein 776 461 Op 3 . - CDS 821789 - 822256 293 ## COG0782 Transcription elongation factor - Prom 822282 - 822341 5.7 + Prom 822495 - 822554 6.2 777 462 Tu 1 . + CDS 822587 - 822946 372 ## Lbuc_0458 aggregation promoting factor-like surface protein + Term 822984 - 823034 7.0 + Prom 823057 - 823116 6.4 778 463 Tu 1 . + CDS 823188 - 824495 403 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 824512 - 824566 11.1 - Term 824498 - 824553 15.1 779 464 Tu 1 . - CDS 824580 - 826475 1603 ## COG4934 Predicted protease - Prom 826534 - 826593 2.0 - Term 826852 - 826901 11.2 780 465 Tu 1 . - CDS 826930 - 827862 701 ## COG0583 Transcriptional regulator - Prom 827994 - 828053 9.6 + Prom 828099 - 828158 8.0 781 466 Op 1 . + CDS 828195 - 830507 1604 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) + Term 830552 - 830588 -0.9 + Prom 830509 - 830568 5.7 782 466 Op 2 . + CDS 830643 - 831122 386 ## COG1438 Arginine repressor + Term 831167 - 831221 1.5 + Prom 831936 - 831995 5.0 783 467 Tu 1 7/0.030 + CDS 832161 - 833402 976 ## PROTEIN SUPPORTED gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 + Term 833438 - 833497 11.1 + Prom 833425 - 833484 4.6 784 468 Op 1 8/0.020 + CDS 833696 - 834727 868 ## COG0078 Ornithine carbamoyltransferase + Term 834768 - 834820 4.5 785 468 Op 2 . + CDS 834855 - 835811 903 ## COG0549 Carbamate kinase + Term 835852 - 835909 10.2 + Prom 836000 - 836059 5.1 786 469 Op 1 . + CDS 836099 - 836785 461 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases + Prom 836821 - 836880 2.7 787 469 Op 2 . + CDS 836909 - 838336 1427 ## COG0531 Amino acid transporters + Term 838361 - 838401 7.2 + Prom 838411 - 838470 4.6 788 470 Tu 1 . + CDS 838501 - 839157 687 ## COG0546 Predicted phosphatases + Term 839263 - 839305 1.1 - Term 839237 - 839304 21.1 789 471 Op 1 . - CDS 839423 - 839761 388 ## COG1416 Uncharacterized conserved protein 790 471 Op 2 . - CDS 839754 - 841190 895 ## COG4320 Uncharacterized protein conserved in bacteria - Prom 841320 - 841379 9.2 + Prom 841251 - 841310 4.5 791 472 Tu 1 . + CDS 841336 - 841914 362 ## COG0350 Methylated DNA-protein cysteine methyltransferase + Term 842021 - 842065 5.1 - Term 841801 - 841842 7.2 792 473 Tu 1 . - CDS 841886 - 842734 589 ## Lbuc_0475 hypothetical protein - Prom 842844 - 842903 4.7 - Term 842848 - 842885 3.0 793 474 Tu 1 . - CDS 842955 - 843383 478 ## Lbuc_0476 helix-turn-helix domain-containing protein - Prom 843406 - 843465 6.9 + Prom 843361 - 843420 4.5 794 475 Op 1 . + CDS 843503 - 844465 889 ## COG1073 Hydrolases of the alpha/beta superfamily 795 475 Op 2 . + CDS 844520 - 846148 1511 ## COG1418 Predicted HD superfamily hydrolase + Term 846202 - 846255 17.1 - Term 846180 - 846251 24.1 796 476 Op 1 . - CDS 846307 - 847863 991 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Prom 847890 - 847949 5.4 - Term 847969 - 848025 12.4 797 476 Op 2 . - CDS 848073 - 850040 1236 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters - Prom 850117 - 850176 5.2 + Prom 849991 - 850050 9.8 798 477 Op 1 . + CDS 850230 - 850625 272 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Term 850663 - 850703 5.4 + Prom 850816 - 850875 5.5 799 477 Op 2 . + CDS 850915 - 851715 604 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 851763 - 851805 11.1 - Term 851751 - 851793 9.2 800 478 Tu 1 . - CDS 851819 - 852775 1144 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase + Prom 852751 - 852810 5.1 801 479 Op 1 1/0.178 + CDS 853049 - 854161 559 ## COG2339 Predicted membrane protein 802 479 Op 2 . + CDS 854237 - 855235 222 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 + Term 855270 - 855319 12.2 - Term 855258 - 855307 13.1 803 480 Tu 1 . - CDS 855392 - 856177 417 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component - Term 856515 - 856572 12.4 804 481 Tu 1 . - CDS 856613 - 858664 1401 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 858778 - 858837 6.0 + Prom 859033 - 859092 6.0 805 482 Op 1 . + CDS 859116 - 859778 545 ## COG0406 Fructose-2,6-bisphosphatase 806 482 Op 2 . + CDS 859793 - 860227 480 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 860262 - 860303 5.4 - Term 860250 - 860291 7.0 807 483 Tu 1 . - CDS 860292 - 861401 794 ## Lbuc_0496 integral membrane protein - Prom 861430 - 861489 5.0 - Term 861473 - 861528 7.2 808 484 Tu 1 . - CDS 861595 - 862062 533 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - Prom 862091 - 862150 6.7 - Term 862231 - 862274 5.8 809 485 Tu 1 . - CDS 862401 - 865109 2315 ## COG2409 Predicted drug exporters of the RND superfamily - Prom 865162 - 865221 6.5 + Prom 865126 - 865185 5.2 810 486 Op 1 . + CDS 865259 - 866242 656 ## COG3049 Penicillin V acylase and related amidases 811 486 Op 2 . + CDS 866335 - 866916 265 ## COG1705 Muramidase (flagellum-specific) + Prom 866936 - 866995 3.4 812 487 Op 1 . + CDS 867031 - 867795 509 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance 813 487 Op 2 . + CDS 867770 - 868108 233 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 868271 - 868318 1.5 - Term 868173 - 868237 28.9 814 488 Tu 1 . - CDS 868287 - 868676 358 ## Lbuc_0504 hypothetical protein - Prom 868777 - 868836 6.0 815 489 Tu 1 . + CDS 868838 - 869392 427 ## COG3153 Predicted acetyltransferase + Term 869401 - 869436 1.9 816 490 Tu 1 . + CDS 869779 - 870369 658 ## MPTP_1692 aggregation promoting factor + Term 870405 - 870451 7.8 - Term 870496 - 870538 3.2 817 491 Op 1 . - CDS 870564 - 871523 818 ## Lbuc_2055 lipoprotein 818 491 Op 2 35/0.000 - CDS 871539 - 873437 230 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 819 491 Op 3 . - CDS 873437 - 875110 1213 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 875216 - 875275 5.5 - Term 875675 - 875721 1.1 820 492 Tu 1 . - CDS 875743 - 876711 760 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Prom 876793 - 876852 7.8 - Term 876799 - 876838 5.4 821 493 Op 1 . - CDS 876868 - 877839 786 ## COG0516 IMP dehydrogenase/GMP reductase - Prom 877868 - 877927 3.5 822 493 Op 2 . - CDS 877930 - 879216 1031 ## COG0104 Adenylosuccinate synthase - Prom 879257 - 879316 5.0 + Prom 879213 - 879272 4.0 823 494 Tu 1 . + CDS 879427 - 880740 1182 ## COG0015 Adenylosuccinate lyase + Term 880821 - 880875 14.0 - Term 881124 - 881167 6.4 824 495 Tu 1 . - CDS 881247 - 882236 734 ## COG1609 Transcriptional regulators - Prom 882264 - 882323 6.0 + Prom 882266 - 882325 4.0 825 496 Op 1 . + CDS 882376 - 883755 1147 ## COG0477 Permeases of the major facilitator superfamily 826 496 Op 2 . + CDS 883814 - 885481 1408 ## COG0366 Glycosidases + Term 885559 - 885604 4.5 + Prom 885590 - 885649 3.5 827 497 Tu 1 . + CDS 885716 - 886081 302 ## Lbuc_1455 hypothetical protein + Term 886118 - 886162 8.2 + Prom 886197 - 886256 7.5 828 498 Op 1 . + CDS 886284 - 886733 311 ## COG3279 Response regulator of the LytR/AlgR family 829 498 Op 2 . + CDS 886738 - 887478 583 ## PEPE_0121 hypothetical protein + Term 887488 - 887540 1.1 - Term 887477 - 887524 2.7 830 499 Tu 1 . - CDS 887533 - 887748 185 ## Lbuc_0513 RelE/StbE family addiction module toxin - Prom 887995 - 888054 27.8 + Prom 891250 - 891309 6.7 831 500 Tu 1 . + CDS 891332 - 892183 666 ## COG0657 Esterase/lipase + Term 892209 - 892267 19.4 - Term 892198 - 892253 18.1 832 501 Tu 1 . - CDS 892330 - 892986 499 ## Lbuc_0515 hypothetical protein - Prom 893014 - 893073 3.2 + Prom 892947 - 893006 8.0 833 502 Tu 1 . + CDS 893122 - 893742 333 ## Lbuc_0516 hypothetical protein + Term 893790 - 893845 0.4 834 503 Tu 1 . - CDS 893877 - 894080 215 ## Lbuc_0517 hypothetical protein - Prom 894134 - 894193 8.8 + Prom 894090 - 894149 7.3 835 504 Tu 1 . + CDS 894240 - 894485 286 ## Lbuc_0518 hypothetical protein + Term 894544 - 894585 4.1 + Prom 894508 - 894567 6.6 836 505 Tu 1 . + CDS 894676 - 896190 1437 ## COG0554 Glycerol kinase + Term 896237 - 896281 9.1 + Prom 896364 - 896423 4.7 837 506 Tu 1 . + CDS 896476 - 897183 496 ## COG3548 Predicted integral membrane protein + Term 897189 - 897240 5.1 - Term 897177 - 897226 8.5 838 507 Op 1 . - CDS 897232 - 897678 495 ## Lbuc_0520 hypothetical protein 839 507 Op 2 . - CDS 897712 - 899094 1154 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase - Prom 899175 - 899234 5.7 - Term 899174 - 899212 -0.1 840 508 Tu 1 . - CDS 899278 - 900126 840 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 900322 - 900381 6.3 + Prom 900202 - 900261 6.0 841 509 Tu 1 . + CDS 900397 - 901254 736 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 842 510 Tu 1 . - CDS 901851 - 902102 80 ## gi|227508699|ref|ZP_03938748.1| hypothetical protein HMPREF0496_0862 - Prom 902229 - 902288 7.0 + Prom 902092 - 902151 2.1 843 511 Op 1 12/0.000 + CDS 902254 - 903042 654 ## COG2145 Hydroxyethylthiazole kinase, sugar kinase family 844 511 Op 2 11/0.000 + CDS 903090 - 903908 904 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 845 511 Op 3 . + CDS 903908 - 904564 550 ## COG0352 Thiamine monophosphate synthase 846 511 Op 4 . + CDS 904635 - 905489 583 ## gi|227508703|ref|ZP_03938752.1| hypothetical protein HMPREF0496_0866 + Term 905637 - 905699 9.2 + Prom 905795 - 905854 6.9 847 512 Tu 1 . + CDS 905878 - 907449 1350 ## Lbuc_0529 hypothetical protein + Term 907513 - 907560 9.2 + Prom 907589 - 907648 8.0 848 513 Op 1 35/0.000 + CDS 907762 - 908553 224 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 849 513 Op 2 20/0.000 + CDS 908550 - 909530 727 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 850 513 Op 3 33/0.000 + CDS 909560 - 910528 723 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 851 513 Op 4 . + CDS 910531 - 911499 680 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component + Term 911526 - 911576 13.1 + Prom 911721 - 911780 5.7 852 514 Tu 1 . + CDS 911819 - 913756 1727 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component + Prom 914303 - 914362 8.5 853 515 Tu 1 . + CDS 914436 - 914891 461 ## gi|227508710|ref|ZP_03938759.1| hypothetical protein HMPREF0496_0873 + Term 914905 - 914951 10.4 + Prom 914900 - 914959 5.5 854 516 Op 1 . + CDS 914988 - 915404 360 ## Lbuc_0106 OsmC family protein + Term 915487 - 915520 0.1 855 516 Op 2 . + CDS 915578 - 917092 1422 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 917098 - 917151 8.9 + Prom 917111 - 917170 8.0 856 517 Tu 1 . + CDS 917327 - 917695 306 ## Lbuc_0621 hypothetical protein - Term 918175 - 918213 1.3 857 518 Tu 1 . - CDS 918374 - 919075 441 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component - Prom 919135 - 919194 5.4 - Term 919193 - 919237 6.6 858 519 Tu 1 . - CDS 919310 - 919489 195 ## gi|227508715|ref|ZP_03938764.1| hypothetical protein HMPREF0496_0878 - Prom 919719 - 919778 11.1 + Prom 919701 - 919760 6.8 859 520 Tu 1 . + CDS 919910 - 920047 101 ## + Term 920163 - 920212 7.0 860 521 Tu 1 . - CDS 919965 - 920261 60 ## - Prom 920287 - 920346 2.2 + Prom 920167 - 920226 7.7 861 522 Tu 1 . + CDS 920303 - 920659 353 ## LC705_00164 hypothetical protein + Term 920688 - 920739 6.0 - Term 920742 - 920782 8.3 862 523 Tu 1 . - CDS 920807 - 921661 808 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - Prom 921710 - 921769 3.6 + Prom 922794 - 922853 2.9 863 524 Op 1 . + CDS 922893 - 923609 462 ## COG2071 Predicted glutamine amidotransferases + Prom 923674 - 923733 3.0 864 524 Op 2 . + CDS 923753 - 924439 709 ## Lbuc_0635 filamentation induced by cAMP protein Fic + Term 924446 - 924503 20.1 - Term 924434 - 924491 13.5 865 525 Op 1 8/0.020 - CDS 924501 - 925346 721 ## COG4302 Ethanolamine ammonia-lyase, small subunit 866 525 Op 2 5/0.036 - CDS 925347 - 926723 1067 ## COG4303 Ethanolamine ammonia-lyase, large subunit 867 525 Op 3 . - CDS 926738 - 928147 988 ## COG4819 Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition - Prom 928193 - 928252 5.5 + Prom 928209 - 928268 7.8 868 526 Tu 1 . + CDS 928314 - 929942 1556 ## COG0531 Amino acid transporters + Term 929958 - 930009 11.4 - Term 929946 - 929997 11.4 869 527 Tu 1 . - CDS 930010 - 930291 311 ## gi|227508725|ref|ZP_03938774.1| hypothetical protein HMPREF0496_0888 - Prom 930349 - 930408 4.6 + Prom 930286 - 930345 5.1 870 528 Op 1 . + CDS 930549 - 930887 271 ## gi|227508726|ref|ZP_03938775.1| hypothetical protein HMPREF0496_0889 + Term 930897 - 930961 4.1 + Prom 930918 - 930977 4.2 871 528 Op 2 . + CDS 931074 - 932519 1378 ## COG0477 Permeases of the major facilitator superfamily + Term 932542 - 932589 14.6 + Prom 932886 - 932945 9.0 872 529 Op 1 22/0.000 + CDS 933043 - 933516 461 ## COG1918 Fe2+ transport system protein A 873 529 Op 2 . + CDS 933520 - 935637 1744 ## COG0370 Fe2+ transport system protein B 874 529 Op 3 . + CDS 935689 - 935856 69 ## gi|227508730|ref|ZP_03938779.1| hypothetical protein HMPREF0496_0893 875 529 Op 4 . + CDS 935936 - 936088 72 ## gi|227508731|ref|ZP_03938780.1| hypothetical protein HMPREF0496_0894 + Term 936188 - 936228 4.2 + Prom 936219 - 936278 4.3 876 530 Tu 1 . + CDS 936462 - 937394 1010 ## LVIS_1974 hypothetical protein + Term 937419 - 937452 2.2 - Term 937774 - 937812 2.0 877 531 Op 1 . - CDS 937841 - 939901 1571 ## COG4934 Predicted protease 878 531 Op 2 . - CDS 939936 - 941852 1471 ## COG4934 Predicted protease - Prom 941886 - 941945 6.7 879 532 Op 1 . - CDS 942029 - 943924 1434 ## COG4934 Predicted protease - Prom 943960 - 944019 3.2 880 532 Op 2 . - CDS 944021 - 944824 682 ## LSA1295 hypothetical protein - Prom 944877 - 944936 7.6 - Term 945061 - 945094 3.1 881 533 Op 1 . - CDS 945125 - 947014 1349 ## COG4934 Predicted protease 882 533 Op 2 . - CDS 947069 - 947485 470 ## gi|227508738|ref|ZP_03938787.1| hypothetical protein HMPREF0496_0901 - Prom 947686 - 947745 5.7 + Prom 947586 - 947645 5.3 883 534 Op 1 . + CDS 947821 - 949104 844 ## Lbuc_1954 alpha-galactosidase (EC:3.2.1.22) 884 534 Op 2 . + CDS 949126 - 950508 1417 ## COG2211 Na+/melibiose symporter and related transporters + Term 950541 - 950588 9.2 - Term 950522 - 950584 20.0 885 535 Tu 1 . - CDS 950833 - 951771 722 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 951878 - 951937 4.7 + Prom 951870 - 951929 9.4 886 536 Op 1 . + CDS 951977 - 954082 1399 ## COG3345 Alpha-galactosidase + Term 954190 - 954237 1.1 + Prom 954223 - 954282 4.5 887 536 Op 2 . + CDS 954343 - 955173 760 ## COG1307 Uncharacterized protein conserved in bacteria + Term 955309 - 955369 11.4 - Term 955304 - 955352 0.6 888 537 Tu 1 . - CDS 955387 - 957006 1352 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 957045 - 957104 9.1 - Term 957262 - 957298 0.4 889 538 Op 1 . - CDS 957335 - 958435 875 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 890 538 Op 2 10/0.005 - CDS 958452 - 959543 709 ## COG0379 Quinolinate synthase 891 538 Op 3 . - CDS 959620 - 961095 1397 ## COG0029 Aspartate oxidase - Prom 961118 - 961177 12.2 + Prom 961847 - 961906 10.4 892 539 Op 1 . + CDS 961939 - 962070 112 ## gi|227511732|ref|ZP_03941781.1| hypothetical protein HMPREF0497_0854 893 539 Op 2 . + CDS 962027 - 962914 558 ## COG1396 Predicted transcriptional regulators + Prom 962934 - 962993 4.8 894 540 Op 1 . + CDS 963013 - 963204 100 ## gi|227508753|ref|ZP_03938802.1| hypothetical protein HMPREF0496_0916 895 540 Op 2 . + CDS 963235 - 963624 235 ## LCRIS_01740 hypothetical protein + Term 963777 - 963808 -0.6 896 541 Tu 1 . - CDS 963883 - 964281 444 ## lhv_0953 hypothetical protein - Prom 964493 - 964552 5.3 + Prom 964603 - 964662 6.7 897 542 Op 1 2/0.096 + CDS 964747 - 965898 1196 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 898 542 Op 2 . + CDS 965913 - 967430 1471 ## COG1288 Predicted membrane protein + Term 967451 - 967487 -0.6 - Term 967888 - 967919 -0.5 899 543 Tu 1 . - CDS 968015 - 969904 1654 ## Lbuc_0409 hypothetical protein - Prom 970078 - 970137 7.4 900 544 Tu 1 . - CDS 970240 - 971988 1038 ## Lbuc_0409 hypothetical protein - Prom 972032 - 972091 5.0 901 545 Op 1 . - CDS 972145 - 974010 1489 ## Lbuc_0409 hypothetical protein 902 545 Op 2 . - CDS 974052 - 975839 1400 ## Lbuc_1928 lipoprotein - Prom 975906 - 975965 9.9 - Term 975995 - 976047 1.1 903 546 Tu 1 . - CDS 976110 - 977027 667 ## COG0451 Nucleoside-diphosphate-sugar epimerases + Prom 977148 - 977207 8.0 904 547 Tu 1 . + CDS 977282 - 977623 349 ## LVIS_A06 XRE family transcriptional regulator 905 548 Op 1 . - CDS 978116 - 978694 391 ## gi|227508767|ref|ZP_03938816.1| conserved hypothetical protein 906 548 Op 2 . - CDS 978687 - 979961 941 ## LAF_0101 hypothetical protein - Prom 980013 - 980072 5.6 - Term 980119 - 980166 8.1 907 549 Op 1 . - CDS 980186 - 980593 442 ## CLJU_c31460 phage-like protein 908 549 Op 2 . - CDS 980633 - 980815 157 ## BC1003_3357 YcfA family protein - Prom 980835 - 980894 4.6 - Term 981021 - 981057 -0.8 909 550 Tu 1 . - CDS 981116 - 982051 702 ## COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold - Prom 982076 - 982135 3.8 + Prom 982077 - 982136 6.0 910 551 Op 1 . + CDS 982156 - 982761 318 ## LPST_C2439 transcription regulator 911 551 Op 2 . + CDS 982816 - 983319 275 ## gi|227508773|ref|ZP_03938822.1| hypothetical protein HMPREF0496_0936 + Term 983416 - 983458 5.5 - Term 983402 - 983446 5.1 912 552 Tu 1 . - CDS 983455 - 983940 469 ## COG3760 Uncharacterized conserved protein - Prom 984058 - 984117 8.9 913 553 Tu 1 . + CDS 984434 - 984970 474 ## Lbuc_0558 RNA polymerase sigma factor, sigma-70 family + Prom 985022 - 985081 3.5 914 554 Op 1 . + CDS 985104 - 985352 352 ## Lbuc_0559 hypothetical protein + Prom 985354 - 985413 4.2 915 554 Op 2 . + CDS 985436 - 985660 362 ## Lbuc_0560 hypothetical protein + Term 985671 - 985710 1.2 + Prom 986660 - 986719 80.3 916 555 Tu 1 . + CDS 986800 - 987918 697 ## Lbuc_0564 hypothetical protein + Term 987922 - 987972 3.7 - Term 988457 - 988502 2.5 917 556 Op 1 25/0.000 - CDS 988560 - 990104 1409 ## COG0438 Glycosyltransferase 918 556 Op 2 . - CDS 990107 - 991663 1363 ## COG0438 Glycosyltransferase - Prom 991781 - 991840 6.9 - Term 991814 - 991852 8.6 919 557 Tu 1 . - CDS 991899 - 992735 632 ## gi|227508782|ref|ZP_03938831.1| hypothetical protein HMPREF0496_0945 920 558 Tu 1 . - CDS 993910 - 994221 240 ## Lbuc_0784 peptidase M10A and M12B matrixin and adamalysin - Prom 994339 - 994398 5.3 921 559 Op 1 . - CDS 994664 - 995425 433 ## gi|227508784|ref|ZP_03938833.1| hypothetical protein HMPREF0496_0947 - Prom 995449 - 995508 5.9 - Term 995506 - 995543 -1.0 922 559 Op 2 . - CDS 995592 - 996407 385 ## gi|227508785|ref|ZP_03938834.1| hypothetical protein HMPREF0496_0948 - Prom 996609 - 996668 8.8 923 560 Tu 1 . - CDS 996724 - 997551 846 ## LVIS_2283 hypothetical protein - Prom 997582 - 997641 4.3 924 561 Tu 1 . - CDS 997749 - 998504 540 ## gi|227508787|ref|ZP_03938836.1| hypothetical protein HMPREF0496_0950 - Prom 998562 - 998621 2.9 + Prom 998885 - 998944 4.4 925 562 Tu 1 . + CDS 999009 - 1003106 2993 ## Lbuc_2321 hypothetical protein + Term 1003154 - 1003205 12.1 + Prom 1004017 - 1004076 8.0 926 563 Op 1 . + CDS 1004120 - 1005280 1118 ## LAR_1695 hypothetical protein + Term 1005355 - 1005394 -1.0 + Prom 1005442 - 1005501 6.7 927 563 Op 2 . + CDS 1005542 - 1006591 779 ## gi|227508790|ref|ZP_03938839.1| hypothetical protein HMPREF0496_0953 + Term 1006612 - 1006658 10.4 928 564 Tu 1 . - CDS 1007126 - 1007380 319 ## Lbuc_0266 AbrB family transcriptional regulator - Prom 1007407 - 1007466 4.0 + Prom 1007634 - 1007693 5.5 929 565 Tu 1 . + CDS 1007731 - 1008075 319 ## COG3600 Uncharacterized phage-associated protein + Term 1008099 - 1008152 11.6 - Term 1008085 - 1008140 8.2 930 566 Tu 1 . - CDS 1008210 - 1008644 406 ## COG0477 Permeases of the major facilitator superfamily 931 567 Tu 1 . - CDS 1009295 - 1009525 250 ## LAF_0917 oxalate-formate antiporter - Prom 1009588 - 1009647 4.9 932 568 Tu 1 . + CDS 1009860 - 1010783 736 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold + Term 1010852 - 1010915 7.5 - Term 1011055 - 1011095 1.5 933 569 Tu 1 . - CDS 1011166 - 1011831 389 ## gi|227508798|ref|ZP_03938847.1| hypothetical protein HMPREF0496_0961 + Prom 1012082 - 1012141 6.2 934 570 Tu 1 . + CDS 1012182 - 1014995 1929 ## Lbuc_0846 lipoprotein + Term 1015000 - 1015051 11.7 - Term 1014993 - 1015034 6.1 935 571 Tu 1 . - CDS 1015121 - 1015561 406 ## gi|227508800|ref|ZP_03938849.1| hypothetical protein HMPREF0496_0963 - Prom 1015683 - 1015742 6.2 936 572 Tu 1 . - CDS 1015807 - 1016073 376 ## gi|227508801|ref|ZP_03938850.1| transcriptional regulator - Prom 1016093 - 1016152 1.9 - Term 1016157 - 1016193 1.1 937 573 Tu 1 . - CDS 1016198 - 1016413 174 ## SGGBAA2069_c00820 hypothetical protein - Prom 1016436 - 1016495 3.6 + Prom 1016435 - 1016494 7.1 938 574 Tu 1 . + CDS 1016514 - 1016813 64 ## gi|227508803|ref|ZP_03938852.1| hypothetical protein HMPREF0496_0966 + Term 1016870 - 1016908 0.6 + Prom 1016937 - 1016996 3.0 939 575 Tu 1 . + CDS 1017161 - 1019200 1633 ## Lbuc_1928 lipoprotein + Term 1019232 - 1019273 6.3 + Prom 1019319 - 1019378 7.5 940 576 Op 1 . + CDS 1019408 - 1019842 322 ## gi|227508805|ref|ZP_03938854.1| hypothetical protein HMPREF0496_0968 941 576 Op 2 . + CDS 1019910 - 1020179 200 ## COG3093 Plasmid maintenance system antidote protein + Prom 1020186 - 1020245 2.6 942 576 Op 3 . + CDS 1020267 - 1020686 357 ## gi|227508807|ref|ZP_03938856.1| hypothetical protein HMPREF0496_0970 + Term 1020801 - 1020840 3.6 - Term 1020787 - 1020828 4.9 943 577 Tu 1 . - CDS 1020859 - 1021266 119 ## gi|227508808|ref|ZP_03938857.1| hypothetical protein HMPREF0496_0971 - Prom 1021298 - 1021357 4.9 + Prom 1021283 - 1021342 8.2 944 578 Op 1 . + CDS 1021366 - 1021794 273 ## gi|227508809|ref|ZP_03938858.1| hypothetical protein HMPREF0496_0972 945 578 Op 2 . + CDS 1021818 - 1022255 351 ## Lbuc_1919 hypothetical protein + Term 1022291 - 1022331 -1.0 946 579 Op 1 . + CDS 1022699 - 1023142 286 ## gi|227508811|ref|ZP_03938860.1| hypothetical protein HMPREF0496_0974 947 579 Op 2 . + CDS 1023175 - 1023603 261 ## gi|227508812|ref|ZP_03938861.1| hypothetical protein HMPREF0496_0975 + Term 1023614 - 1023653 2.0 948 579 Op 3 . + CDS 1023678 - 1024088 195 ## gi|227508813|ref|ZP_03938862.1| hypothetical protein HMPREF0496_0976 + Term 1024108 - 1024165 11.0 - Term 1024096 - 1024153 3.4 949 580 Tu 1 . - CDS 1024187 - 1024423 136 ## gi|227508814|ref|ZP_03938863.1| hypothetical protein HMPREF0496_0977 - Prom 1024668 - 1024727 7.2 + Prom 1024704 - 1024763 6.7 950 581 Op 1 . + CDS 1024889 - 1025302 62 ## gi|227508815|ref|ZP_03938864.1| hypothetical protein HMPREF0496_0978 951 581 Op 2 . + CDS 1025323 - 1025721 312 ## gi|227508816|ref|ZP_03938865.1| hypothetical protein HMPREF0496_0979 952 581 Op 3 . + CDS 1025789 - 1025923 91 ## 953 581 Op 4 . + CDS 1025948 - 1026127 62 ## gi|227508818|ref|ZP_03938867.1| hypothetical protein HMPREF0496_0981 + Prom 1026641 - 1026700 8.2 954 582 Tu 1 . + CDS 1026792 - 1029170 1866 ## Lbuc_0846 lipoprotein + Prom 1029246 - 1029305 7.1 955 583 Tu 1 . + CDS 1029397 - 1032846 2217 ## Lbuc_0846 lipoprotein + Term 1032918 - 1032959 -0.4 + Prom 1033064 - 1033123 5.4 956 584 Tu 1 . + CDS 1033202 - 1035082 1312 ## Lbuc_0846 lipoprotein + Term 1035094 - 1035134 5.0 957 585 Op 1 1/0.178 - CDS 1035244 - 1035837 536 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 958 585 Op 2 . - CDS 1035841 - 1036584 785 ## COG4221 Short-chain alcohol dehydrogenase of unknown specificity - Prom 1036687 - 1036746 4.3 + Prom 1036575 - 1036634 5.0 959 586 Tu 1 . + CDS 1036654 - 1037586 794 ## COG0583 Transcriptional regulator + Term 1037634 - 1037662 -0.6 - Term 1037734 - 1037786 16.1 960 587 Tu 1 . - CDS 1037868 - 1038461 352 ## COG3548 Predicted integral membrane protein - Prom 1038527 - 1038586 4.8 + Prom 1039035 - 1039094 6.1 961 588 Tu 1 . + CDS 1039124 - 1041568 2387 ## Fisuc_0924 carbohydrate binding family 6 + Term 1041653 - 1041700 12.1 + Prom 1044437 - 1044496 5.5 962 589 Tu 1 . + CDS 1044548 - 1047022 2052 ## Fisuc_0924 carbohydrate binding family 6 + Prom 1047062 - 1047121 7.3 963 590 Tu 1 . + CDS 1047177 - 1049561 1675 ## Lbuc_1948 lipoprotein - Term 1049588 - 1049627 4.3 964 591 Tu 1 . - CDS 1049877 - 1051337 950 ## Lbuc_0137 hypothetical protein - Prom 1051389 - 1051448 1.7 965 592 Op 1 . - CDS 1051461 - 1051790 172 ## GALLO_1711 hypothetical protein 966 592 Op 2 . - CDS 1051783 - 1052082 344 ## pWCFS103_01 DNA-damage-inducible gene - Prom 1052123 - 1052182 3.6 + Prom 1053094 - 1053153 9.2 967 593 Tu 1 . + CDS 1053190 - 1053519 243 ## gi|227508835|ref|ZP_03938884.1| conserved hypothetical protein + Term 1053689 - 1053722 -0.9 968 594 Tu 1 . + CDS 1054107 - 1054319 105 ## + Term 1054341 - 1054397 6.2 + Prom 1054488 - 1054547 5.8 969 595 Tu 1 . + CDS 1054746 - 1055567 725 ## Lbuc_2313 CHAD domain-containing protein + Term 1055583 - 1055622 4.3 + Prom 1055696 - 1055755 6.7 970 596 Tu 1 . + CDS 1055799 - 1056467 577 ## gi|227508838|ref|ZP_03938887.1| hypothetical protein HMPREF0496_1001 + Term 1056583 - 1056630 11.1 971 597 Tu 1 . - CDS 1056670 - 1057692 776 ## COG1609 Transcriptional regulators - Prom 1057753 - 1057812 5.8 + Prom 1057645 - 1057704 5.4 972 598 Op 1 1/0.178 + CDS 1057910 - 1059562 1229 ## COG3507 Beta-xylosidase 973 598 Op 2 . + CDS 1059622 - 1060875 1414 ## COG0477 Permeases of the major facilitator superfamily + Term 1060923 - 1060991 12.8 + Prom 1060955 - 1061014 5.3 974 599 Tu 1 . + CDS 1061154 - 1061927 609 ## Lbuc_2081 abortive infection protein + Term 1062041 - 1062084 7.2 + Prom 1062030 - 1062089 5.4 975 600 Tu 1 . + CDS 1062280 - 1064955 2031 ## Lbuc_0409 hypothetical protein + Term 1065016 - 1065071 16.8 - Term 1065006 - 1065057 15.1 976 601 Op 1 . - CDS 1065107 - 1065457 203 ## LPST_P0013 hypothetical protein 977 601 Op 2 . - CDS 1065471 - 1065791 281 ## LPST_P0012 hypothetical protein 978 601 Op 3 . - CDS 1065784 - 1067085 830 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Prom 1067129 - 1067188 3.4 + Prom 1067533 - 1067592 3.3 979 602 Tu 1 . + CDS 1067621 - 1069339 1269 ## gi|227508848|ref|ZP_03938897.1| hypothetical protein HMPREF0496_1011 + Prom 1069941 - 1070000 80.3 980 603 Tu 1 . + CDS 1070237 - 1070596 406 ## Lbuc_0544 lipoprotein + Term 1070642 - 1070694 10.0 - Term 1070629 - 1070681 10.0 981 604 Tu 1 . - CDS 1070770 - 1071036 307 ## gi|227508850|ref|ZP_03938899.1| hypothetical protein HMPREF0496_1013 + Prom 1071128 - 1071187 5.7 982 605 Tu 1 . + CDS 1071257 - 1072339 1043 ## gi|227508851|ref|ZP_03938900.1| hypothetical protein HMPREF0496_1014 + Term 1072404 - 1072442 -0.2 + Prom 1072560 - 1072619 6.1 983 606 Op 1 . + CDS 1072648 - 1073331 621 ## LVIS_0884 N-acetylmuramoyl-L-alanine amidase + Prom 1073351 - 1073410 2.7 984 606 Op 2 . + CDS 1073431 - 1073883 467 ## Pjdr2_5556 hypothetical protein + Term 1073915 - 1073950 -0.6 - Term 1073941 - 1073990 5.1 985 607 Tu 1 . - CDS 1074068 - 1074673 303 ## COG1309 Transcriptional regulator - Prom 1074761 - 1074820 2.2 986 608 Op 1 . + CDS 1074887 - 1076008 694 ## COG0006 Xaa-Pro aminopeptidase 987 608 Op 2 . + CDS 1076022 - 1076897 646 ## COG1284 Uncharacterized conserved protein + Term 1076943 - 1076976 -0.2 988 609 Tu 1 . - CDS 1076986 - 1077429 640 ## Lbuc_0210 GCN5-like N-acetyltransferase - Prom 1077606 - 1077665 7.9 + Prom 1077964 - 1078023 4.9 989 610 Tu 1 . + CDS 1078054 - 1078350 357 ## PPSC2_c2024 protein + Prom 1078353 - 1078412 3.2 990 611 Tu 1 . + CDS 1078456 - 1079202 379 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases + Term 1079397 - 1079431 0.5 + Prom 1079353 - 1079412 5.8 991 612 Tu 1 . + CDS 1079456 - 1081123 1606 ## COG0366 Glycosidases + Term 1081178 - 1081208 -0.9 + Prom 1081393 - 1081452 6.2 992 613 Tu 1 . + CDS 1081526 - 1082599 746 ## COG0477 Permeases of the major facilitator superfamily + Term 1082843 - 1082883 1.3 993 614 Tu 1 . - CDS 1082900 - 1083907 612 ## COG1609 Transcriptional regulators - Prom 1083938 - 1083997 7.0 + Prom 1084079 - 1084138 2.0 994 615 Tu 1 . + CDS 1084186 - 1084596 165 ## LCAZH_0367 major facilitator superfamily permease + Term 1084647 - 1084708 6.5 - Term 1084640 - 1084688 1.1 995 616 Tu 1 . - CDS 1084810 - 1085922 1014 ## COG0620 Methionine synthase II (cobalamin-independent) - Prom 1086018 - 1086077 6.4 996 617 Tu 1 . - CDS 1086307 - 1086933 544 ## gi|227508866|ref|ZP_03938915.1| hypothetical protein HMPREF0496_1029 - Prom 1086953 - 1087012 2.0 + Prom 1087220 - 1087279 8.4 997 618 Op 1 . + CDS 1087323 - 1089311 1484 ## Lbuc_0409 hypothetical protein + Prom 1089347 - 1089406 5.9 998 618 Op 2 . + CDS 1089495 - 1089758 115 ## COG1925 Phosphotransferase system, HPr-related proteins + Term 1089828 - 1089882 18.1 999 619 Op 1 23/0.000 - CDS 1089814 - 1090440 362 ## COG2801 Transposase and inactivated derivatives - Prom 1090605 - 1090664 3.4 1000 619 Op 2 . - CDS 1090692 - 1091219 219 ## COG2963 Transposase and inactivated derivatives + Prom 1091469 - 1091528 9.0 1001 620 Tu 1 . + CDS 1091660 - 1094098 1453 ## Lbuc_1948 lipoprotein + Term 1094167 - 1094226 5.6 - Term 1094155 - 1094214 8.6 1002 621 Tu 1 . - CDS 1094267 - 1095004 263 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 - Prom 1095043 - 1095102 5.5 - Term 1095116 - 1095154 3.0 1003 622 Tu 1 . - CDS 1095201 - 1095362 161 ## gi|227508874|ref|ZP_03938923.1| hypothetical protein HMPREF0496_1037 + Prom 1095604 - 1095663 7.7 1004 623 Tu 1 . + CDS 1095699 - 1096109 124 ## gi|227508876|ref|ZP_03938925.1| hypothetical protein HMPREF0496_1039 + Term 1096260 - 1096295 2.5 + Prom 1096113 - 1096172 5.3 1005 624 Tu 1 . + CDS 1096337 - 1097050 545 ## COG0819 Putative transcription activator 1006 625 Tu 1 . + CDS 1097477 - 1098016 381 ## Lbuc_1946 hypothetical protein 1007 626 Tu 1 . + CDS 1098241 - 1098525 124 ## gi|227508879|ref|ZP_03938928.1| hypothetical protein HMPREF0496_1042 + Term 1098766 - 1098809 4.5 1008 627 Tu 1 . + CDS 1099078 - 1100853 1532 ## COG1404 Subtilisin-like serine proteases + Term 1100907 - 1100966 10.2 - Term 1100894 - 1100954 14.2 1009 628 Tu 1 . - CDS 1101020 - 1101364 254 ## gi|227508881|ref|ZP_03938930.1| hypothetical protein HMPREF0496_1044 - Prom 1101450 - 1101509 12.6 - Term 1101497 - 1101539 1.7 1010 629 Op 1 . - CDS 1101564 - 1102760 755 ## COG2807 Cyanate permease 1011 629 Op 2 . - CDS 1102819 - 1103244 514 ## gi|227508883|ref|ZP_03938932.1| hypothetical protein HMPREF0496_1046 - Prom 1103428 - 1103487 4.3 - Term 1103427 - 1103485 13.8 1012 630 Tu 1 . - CDS 1103513 - 1104553 887 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - Prom 1104582 - 1104641 6.4 + Prom 1104644 - 1104703 4.7 1013 631 Op 1 . + CDS 1104770 - 1105600 722 ## COG1968 Uncharacterized bacitracin resistance protein + Prom 1105625 - 1105684 3.5 1014 631 Op 2 . + CDS 1105723 - 1109067 2797 ## COG3291 FOG: PKD repeat + Term 1109098 - 1109148 9.2 + Prom 1109287 - 1109346 8.8 1015 632 Tu 1 . + CDS 1109413 - 1110492 876 ## LAR_1695 hypothetical protein + Term 1110521 - 1110569 9.8 + Prom 1110604 - 1110663 3.5 1016 633 Tu 1 . + CDS 1110704 - 1111621 525 ## gi|227508889|ref|ZP_03938938.1| hypothetical protein HMPREF0496_1052 + Term 1111714 - 1111749 3.7 - Term 1111633 - 1111667 -0.5 1017 634 Tu 1 . - CDS 1111828 - 1112160 139 ## gi|227508891|ref|ZP_03938940.1| hypothetical protein HMPREF0496_1054 - Prom 1112328 - 1112387 6.5 + Prom 1112287 - 1112346 4.6 1018 635 Op 1 . + CDS 1112480 - 1112875 316 ## gi|227508892|ref|ZP_03938941.1| hypothetical protein HMPREF0496_1055 1019 635 Op 2 . + CDS 1112890 - 1113402 345 ## gi|227508893|ref|ZP_03938942.1| hypothetical protein HMPREF0496_1056 + Term 1113427 - 1113485 3.1 + Prom 1113521 - 1113580 6.6 1020 636 Op 1 . + CDS 1113663 - 1114292 319 ## LPST_C0724 putative abortive infection protein AbiGI 1021 636 Op 2 . + CDS 1114361 - 1115137 336 ## Apre_0680 hypothetical protein + Term 1115140 - 1115205 14.3 - Term 1115133 - 1115186 11.2 1022 637 Tu 1 . - CDS 1115227 - 1116114 893 ## COG0760 Parvulin-like peptidyl-prolyl isomerase - Prom 1116268 - 1116327 6.4 + Prom 1116191 - 1116250 7.7 1023 638 Tu 1 . + CDS 1116398 - 1116523 96 ## + Term 1116567 - 1116612 -0.8 - Term 1116620 - 1116656 1.1 1024 639 Op 1 . - CDS 1116822 - 1117073 103 ## LAR_1798 hypothetical protein 1025 639 Op 2 . - CDS 1117063 - 1117365 306 ## LCRIS_01998 DNA-damage-inducible protein J 1026 639 Op 3 . - CDS 1117423 - 1118181 578 ## COG0627 Predicted esterase - Prom 1118404 - 1118463 5.5 + Prom 1118360 - 1118419 3.7 1027 640 Tu 1 . + CDS 1118467 - 1119243 1056 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 1119252 - 1119305 11.2 - Term 1119242 - 1119291 5.1 1028 641 Op 1 . - CDS 1119313 - 1119561 301 ## gi|227508903|ref|ZP_03938952.1| transcriptional regulator 1029 641 Op 2 . - CDS 1119629 - 1119895 387 ## gi|227508904|ref|ZP_03938953.1| hypothetical protein HMPREF0496_1067 - Prom 1120077 - 1120136 7.7 1030 642 Tu 1 . + CDS 1120208 - 1121041 586 ## gi|227508905|ref|ZP_03938954.1| hypothetical protein HMPREF0496_1068 + Term 1121150 - 1121209 11.1 + Prom 1123582 - 1123641 7.3 1031 643 Op 1 . + CDS 1123815 - 1124732 451 ## gi|227508907|ref|ZP_03938956.1| hypothetical protein HMPREF0496_1070 1032 643 Op 2 . + CDS 1124791 - 1125294 296 ## gi|227508908|ref|ZP_03938957.1| hypothetical protein HMPREF0496_1071 1033 643 Op 3 . + CDS 1125287 - 1125727 299 ## gi|227508909|ref|ZP_03938958.1| hypothetical protein HMPREF0496_1072 1034 644 Tu 1 . + CDS 1125794 - 1126033 151 ## gi|227508910|ref|ZP_03938959.1| hypothetical protein HMPREF0496_1073 + Term 1126044 - 1126090 -0.9 1035 645 Tu 1 . - CDS 1126030 - 1126224 76 ## gi|227508911|ref|ZP_03938960.1| hypothetical protein HMPREF0496_1074 - Prom 1126269 - 1126328 3.4 + Prom 1126232 - 1126291 8.8 1036 646 Tu 1 . + CDS 1126365 - 1126667 180 ## gi|227508912|ref|ZP_03938961.1| hypothetical protein HMPREF0496_1075 + Prom 1126994 - 1127053 4.2 1037 647 Tu 1 . + CDS 1127139 - 1127495 223 ## gi|227508913|ref|ZP_03938962.1| hypothetical protein HMPREF0496_1076 - Term 1127599 - 1127647 11.5 1038 648 Op 1 . - CDS 1127748 - 1127870 137 ## 1039 648 Op 2 . - CDS 1127875 - 1128051 133 ## gi|227508915|ref|ZP_03938964.1| hypothetical protein HMPREF0496_1078 - Prom 1128261 - 1128320 6.9 - Term 1128363 - 1128409 4.1 1040 649 Op 1 . - CDS 1128435 - 1129118 698 ## COG2085 Predicted dinucleotide-binding enzymes 1041 649 Op 2 . - CDS 1129118 - 1130170 665 ## PROTEIN SUPPORTED gi|15900201|ref|NP_344805.1| hypothetical protein SP_0267 - Prom 1130208 - 1130267 8.9 + Prom 1130907 - 1130966 7.2 1042 650 Tu 1 . + CDS 1131025 - 1132128 504 ## COG2189 Adenine specific DNA methylase Mod + Prom 1132213 - 1132272 2.6 1043 651 Op 1 . + CDS 1132305 - 1132934 294 ## Acfer_1215 site-specific DNA-methyltransferase (adenine-specific) (EC:2.1.1.72) 1044 651 Op 2 . + CDS 1132948 - 1135572 1023 ## EUBREC_1323 putative type III restriction enzyme + Term 1135582 - 1135623 -0.9 1045 652 Tu 1 5/0.036 - CDS 1135712 - 1135924 138 ## COG3436 Transposase and inactivated derivatives 1046 653 Tu 1 . - CDS 1136086 - 1136625 299 ## COG3436 Transposase and inactivated derivatives - Prom 1136659 - 1136718 3.1 - Term 1137066 - 1137114 6.1 1047 654 Tu 1 . - CDS 1137159 - 1140131 899 ## EAT1b_2598 hypothetical protein - Prom 1140180 - 1140239 5.4 - Term 1140572 - 1140633 17.4 1048 655 Op 1 . - CDS 1140679 - 1141464 686 ## COG1878 Predicted metal-dependent hydrolase 1049 655 Op 2 . - CDS 1141478 - 1142824 1327 ## COG0531 Amino acid transporters - Prom 1142850 - 1142909 1.9 1050 656 Tu 1 . - CDS 1143412 - 1143696 74 ## - Prom 1143734 - 1143793 1.6 + Prom 1143702 - 1143761 5.5 1051 657 Op 1 . + CDS 1143789 - 1144295 285 ## PROTEIN SUPPORTED gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 1052 657 Op 2 1/0.178 + CDS 1144301 - 1145467 801 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 1053 657 Op 3 . + CDS 1145464 - 1146564 737 ## COG0371 Glycerol dehydrogenase and related enzymes 1054 657 Op 4 32/0.000 + CDS 1146581 - 1147636 760 ## COG1135 ABC-type metal ion transport system, ATPase component 1055 657 Op 5 22/0.000 + CDS 1147620 - 1148300 612 ## COG2011 ABC-type metal ion transport system, permease component 1056 657 Op 6 . + CDS 1148320 - 1149171 883 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Term 1149264 - 1149310 3.6 + Prom 1149260 - 1149319 4.6 1057 658 Tu 1 2/0.096 + CDS 1149545 - 1150585 731 ## COG0524 Sugar kinases, ribokinase family + Term 1150586 - 1150633 3.3 + Prom 1150646 - 1150705 6.3 1058 659 Op 1 . + CDS 1150764 - 1151717 735 ## COG0524 Sugar kinases, ribokinase family 1059 659 Op 2 . + CDS 1151747 - 1152439 783 ## COG0135 Phosphoribosylanthranilate isomerase 1060 659 Op 3 . + CDS 1152446 - 1153108 520 ## Cphy_0727 hypothetical protein 1061 659 Op 4 . + CDS 1153095 - 1154255 1012 ## COG1454 Alcohol dehydrogenase, class IV 1062 659 Op 5 . + CDS 1154286 - 1155470 1014 ## COG1972 Nucleoside permease 1063 659 Op 6 . + CDS 1155501 - 1155890 270 ## OEOE_0821 hypothetical protein 1064 659 Op 7 . + CDS 1155908 - 1156840 885 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase + Term 1156903 - 1156954 11.2 + Prom 1156973 - 1157032 10.7 1065 660 Tu 1 . + CDS 1157069 - 1157512 357 ## COG1522 Transcriptional regulators + Term 1157558 - 1157599 6.0 + Prom 1157544 - 1157603 4.6 1066 661 Op 1 . + CDS 1157701 - 1158501 477 ## gi|227508943|ref|ZP_03938992.1| hypothetical protein HMPREF0496_1106 1067 661 Op 2 . + CDS 1158543 - 1159091 187 ## lp_3019 hypothetical protein + Prom 1159181 - 1159240 3.9 1068 662 Tu 1 . + CDS 1159275 - 1159685 257 ## gi|227508945|ref|ZP_03938994.1| hypothetical protein HMPREF0496_1108 + Term 1159726 - 1159785 8.0 + Prom 1159860 - 1159919 10.0 1069 663 Tu 1 . + CDS 1160104 - 1160751 620 ## Pjdr2_4665 S-layer domain protein + Prom 1160753 - 1160812 46.5 1070 664 Op 1 . + CDS 1160898 - 1163462 1812 ## Pjdr2_4665 S-layer domain protein + Prom 1163575 - 1163634 4.8 1071 664 Op 2 . + CDS 1163664 - 1166015 1621 ## Lbuc_1948 lipoprotein + Prom 1166116 - 1166175 5.2 1072 665 Tu 1 . + CDS 1166225 - 1168381 1507 ## COG4886 Leucine-rich repeat (LRR) protein + Term 1168451 - 1168503 5.7 + Prom 1168552 - 1168611 7.0 1073 666 Op 1 . + CDS 1168644 - 1168856 281 ## Lbuc_0068 hypothetical protein 1074 666 Op 2 . + CDS 1168856 - 1169236 287 ## Lbuc_2062 transcriptional modulator of MazE/toxin, MazF + Prom 1169353 - 1169412 7.1 1075 667 Tu 1 . + CDS 1169494 - 1170966 789 ## Lbuc_2303 hypothetical protein - Term 1170968 - 1171011 -0.2 1076 668 Tu 1 . - CDS 1171040 - 1171159 57 ## - Prom 1171308 - 1171367 3.8 1077 669 Op 1 . - CDS 1171487 - 1171618 109 ## gi|227511876|ref|ZP_03941925.1| hypothetical protein HMPREF0497_0998 1078 669 Op 2 . - CDS 1171696 - 1171947 349 ## gi|227508954|ref|ZP_03939003.1| hypothetical protein HMPREF0496_1117 - Prom 1172024 - 1172083 8.9 1079 670 Tu 1 . + CDS 1172432 - 1173247 634 ## COG2801 Transposase and inactivated derivatives + Prom 1173298 - 1173357 3.4 1080 671 Tu 1 . + CDS 1173607 - 1174611 479 ## COG0523 Putative GTPases (G3E family) - Term 1174407 - 1174447 8.5 1081 672 Tu 1 . - CDS 1174592 - 1175047 226 ## gi|227508958|ref|ZP_03939007.1| hypothetical protein HMPREF0496_1121 - Prom 1175067 - 1175126 6.1 + Prom 1175213 - 1175272 10.3 1082 673 Op 1 . + CDS 1175480 - 1175875 360 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Term 1175890 - 1175928 -0.9 + Prom 1175940 - 1175999 2.4 1083 673 Op 2 . + CDS 1176033 - 1176923 927 ## COG2365 Protein tyrosine/serine phosphatase + Term 1176991 - 1177028 4.5 1084 674 Tu 1 . + CDS 1177311 - 1177652 386 ## Lbuc_1917 cytidyltransferase-like domain-containing protein (EC:2.7.7.2) + Term 1177678 - 1177712 -0.8 1085 675 Op 1 . - CDS 1177739 - 1179274 664 ## Lbuc_2230 hypothetical protein 1086 675 Op 2 . - CDS 1179349 - 1180578 579 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis - Prom 1180693 - 1180752 5.7 + Prom 1180896 - 1180955 8.1 1087 676 Tu 1 . + CDS 1181144 - 1181425 341 ## gi|227508965|ref|ZP_03939014.1| hypothetical protein HMPREF0496_1128 + Term 1181450 - 1181489 6.2 + Prom 1181506 - 1181565 9.5 1088 677 Op 1 . + CDS 1181610 - 1183073 1175 ## COG4640 Predicted membrane protein 1089 677 Op 2 . + CDS 1183099 - 1183452 174 ## gi|227508968|ref|ZP_03939017.1| hypothetical protein HMPREF0496_1131 1090 677 Op 3 . + CDS 1183499 - 1183744 197 ## gi|227508969|ref|ZP_03939018.1| hypothetical protein HMPREF0496_1132 1091 677 Op 4 . + CDS 1183762 - 1184211 353 ## gi|227508970|ref|ZP_03939019.1| hypothetical protein HMPREF0496_1133 + Term 1184242 - 1184284 7.3 1092 677 Op 5 . + CDS 1184349 - 1185326 535 ## gi|227508971|ref|ZP_03939020.1| hypothetical protein HMPREF0496_1134 + Term 1185331 - 1185403 24.0 - Term 1185319 - 1185390 18.1 1093 678 Tu 1 . - CDS 1185417 - 1186715 1456 ## COG0477 Permeases of the major facilitator superfamily - Prom 1186830 - 1186889 8.4 + Prom 1186968 - 1187027 5.7 1094 679 Tu 1 . + CDS 1187207 - 1188058 593 ## COG1409 Predicted phosphohydrolases + Prom 1188170 - 1188229 5.9 1095 680 Op 1 . + CDS 1188272 - 1188871 105 ## gi|227508974|ref|ZP_03939023.1| hypothetical protein HMPREF0496_1137 1096 680 Op 2 . + CDS 1188594 - 1189370 424 ## gi|227508975|ref|ZP_03939024.1| hypothetical protein HMPREF0496_1138 + Prom 1189383 - 1189442 4.0 1097 680 Op 3 . + CDS 1189467 - 1189865 233 ## gi|227508976|ref|ZP_03939025.1| hypothetical protein HMPREF0496_1139 + Term 1189890 - 1189958 25.4 - Term 1189879 - 1189945 21.1 1098 681 Tu 1 . - CDS 1189954 - 1191366 1172 ## COG1757 Na+/H+ antiporter - Prom 1191398 - 1191457 3.3 - Term 1191477 - 1191528 15.3 1099 682 Tu 1 . - CDS 1191760 - 1192401 430 ## LLKF_1648 NADH dehydrogenase - Prom 1192479 - 1192538 5.6 + Prom 1192395 - 1192454 6.6 1100 683 Tu 1 . + CDS 1192675 - 1193040 464 ## LC705_00055 FMN-binding protein + Term 1193050 - 1193087 5.5 + Prom 1193079 - 1193138 6.5 1101 684 Tu 1 . + CDS 1193168 - 1194136 830 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases + Term 1194156 - 1194203 1.1 - Term 1194144 - 1194190 5.5 1102 685 Op 1 12/0.000 - CDS 1194210 - 1195178 652 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 1103 685 Op 2 . - CDS 1195183 - 1196721 1173 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) - Prom 1196862 - 1196921 5.7 + Prom 1196802 - 1196861 3.2 1104 686 Tu 1 . + CDS 1196893 - 1198227 351 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 1198271 - 1198312 1.2 + Prom 1198305 - 1198364 4.6 1105 687 Op 1 . + CDS 1198391 - 1198819 356 ## COG1846 Transcriptional regulators 1106 687 Op 2 . + CDS 1198849 - 1199433 558 ## LSEI_0317 hypothetical protein 1107 687 Op 3 . + CDS 1199447 - 1199656 251 ## gi|227508987|ref|ZP_03939036.1| conserved hypothetical protein + Term 1199684 - 1199728 2.7 + Prom 1199767 - 1199826 8.7 1108 688 Tu 1 . + CDS 1199922 - 1201316 1295 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 1201390 - 1201449 9.1 + Prom 1201427 - 1201486 4.9 1109 689 Tu 1 . + CDS 1201521 - 1202687 874 ## COG1600 Uncharacterized Fe-S protein + Term 1202719 - 1202767 9.3 - Term 1202705 - 1202755 8.1 1110 690 Tu 1 . - CDS 1202779 - 1203801 732 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold - Prom 1203853 - 1203912 9.1 - Term 1203999 - 1204042 -0.9 1111 691 Tu 1 . - CDS 1204109 - 1205536 1245 ## COG0531 Amino acid transporters - Prom 1205669 - 1205728 3.8 1112 692 Op 1 . - CDS 1205792 - 1206937 1045 ## COG1929 Glycerate kinase 1113 692 Op 2 . - CDS 1207006 - 1207371 312 ## gi|227508993|ref|ZP_03939042.1| hypothetical protein HMPREF0496_1156 - Prom 1207425 - 1207484 6.0 1114 693 Tu 1 . - CDS 1207509 - 1207817 345 ## gi|227508994|ref|ZP_03939043.1| hypothetical protein HMPREF0496_1157 - Prom 1207914 - 1207973 3.8 1115 694 Tu 1 . + CDS 1208232 - 1209023 708 ## COG0637 Predicted phosphatase/phosphohexomutase + Term 1209055 - 1209115 7.0 - Term 1209150 - 1209198 10.0 1116 695 Tu 1 . - CDS 1209221 - 1210171 828 ## COG0039 Malate/lactate dehydrogenases - Prom 1210206 - 1210265 8.5 + Prom 1210300 - 1210359 8.3 1117 696 Tu 1 . + CDS 1210392 - 1210712 292 ## Lbuc_0508 hypothetical protein + Term 1210729 - 1210784 11.2 - Term 1210715 - 1210770 11.2 1118 697 Op 1 16/0.000 - CDS 1210824 - 1211369 491 ## COG0311 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis 1119 697 Op 2 . - CDS 1211387 - 1212277 1052 ## COG0214 Pyridoxine biosynthesis enzyme - Prom 1212303 - 1212362 4.3 1120 698 Tu 1 . + CDS 1213094 - 1214983 1810 ## COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase 1121 699 Op 1 . - CDS 1216543 - 1218585 1449 ## COG2936 Predicted acyl esterases 1122 699 Op 2 . - CDS 1218601 - 1220232 1339 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 1123 699 Op 3 . - CDS 1220258 - 1221328 1026 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily - Prom 1221364 - 1221423 8.9 + Prom 1221369 - 1221428 6.1 1124 700 Tu 1 1/0.178 + CDS 1221658 - 1223517 1709 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 1223544 - 1223591 0.2 + Prom 1223578 - 1223637 5.1 1125 701 Tu 1 . + CDS 1223670 - 1225529 1438 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 1225538 - 1225577 2.3 - Term 1225526 - 1225565 2.3 1126 702 Tu 1 . - CDS 1225592 - 1226188 142 ## COG4430 Uncharacterized protein conserved in bacteria - Prom 1226318 - 1226377 5.8 + Prom 1226198 - 1226257 5.6 1127 703 Tu 1 . + CDS 1226397 - 1227719 1142 ## COG0174 Glutamine synthetase + Term 1227740 - 1227796 3.5 + Prom 1227809 - 1227868 5.3 1128 704 Tu 1 . + CDS 1227899 - 1228462 417 ## COG3545 Predicted esterase of the alpha/beta hydrolase fold + Term 1228521 - 1228558 1.0 - Term 1228500 - 1228552 6.4 1129 705 Tu 1 . - CDS 1228557 - 1230626 1366 ## COG3379 Uncharacterized conserved protein - Prom 1230674 - 1230733 2.1 + Prom 1231038 - 1231097 7.5 1130 706 Op 1 . + CDS 1231202 - 1232149 603 ## COG0583 Transcriptional regulator 1131 706 Op 2 . + CDS 1232197 - 1232910 620 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 1132 706 Op 3 . + CDS 1232927 - 1233967 1012 ## COG4521 ABC-type taurine transport system, periplasmic component 1133 706 Op 4 . + CDS 1234006 - 1234815 674 ## COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component + Term 1234834 - 1234890 15.5 - Term 1234819 - 1234881 8.7 1134 707 Tu 1 . - CDS 1234948 - 1235661 492 ## COG1835 Predicted acyltransferases - Prom 1235714 - 1235773 6.2 1135 708 Tu 1 . + CDS 1235990 - 1236865 728 ## COG0388 Predicted amidohydrolase + Term 1236898 - 1236932 4.6 + Prom 1236889 - 1236948 7.9 1136 709 Tu 1 . + CDS 1237048 - 1237488 474 ## gi|227509018|ref|ZP_03939067.1| hypothetical protein HMPREF0496_1181 + Term 1237507 - 1237538 -0.7 + Prom 1238165 - 1238224 5.2 1137 710 Tu 1 . + CDS 1238329 - 1238412 59 ## + Term 1238468 - 1238504 3.0 + Prom 1238442 - 1238501 5.2 1138 711 Op 1 11/0.000 + CDS 1238548 - 1239711 1219 ## COG0119 Isopropylmalate/homocitrate/citramalate synthases 1139 711 Op 2 10/0.005 + CDS 1239711 - 1240790 1124 ## COG0473 Isocitrate/isopropylmalate dehydrogenase 1140 711 Op 3 30/0.000 + CDS 1240768 - 1242141 1092 ## COG0065 3-isopropylmalate dehydratase large subunit 1141 711 Op 4 . + CDS 1242142 - 1242726 586 ## COG0066 3-isopropylmalate dehydratase small subunit 1142 711 Op 5 . + CDS 1242760 - 1244070 1066 ## COG0477 Permeases of the major facilitator superfamily + Term 1244182 - 1244225 5.2 + Prom 1244204 - 1244263 9.4 1143 712 Tu 1 . + CDS 1244368 - 1244655 333 ## gi|227509025|ref|ZP_03939074.1| hypothetical protein HMPREF0496_1188 + Term 1244681 - 1244738 9.6 - Term 1244667 - 1244726 12.1 1144 713 Tu 1 . - CDS 1244815 - 1245801 1002 ## gi|227509026|ref|ZP_03939075.1| hypothetical protein HMPREF0496_1189 - Prom 1246001 - 1246060 5.0 - Term 1246437 - 1246477 3.5 1145 714 Op 1 . - CDS 1246526 - 1246987 399 ## COG2606 Uncharacterized conserved protein 1146 714 Op 2 . - CDS 1247000 - 1248400 1006 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 1248496 - 1248555 2.1 + Prom 1248984 - 1249043 5.3 1147 715 Tu 1 . + CDS 1249182 - 1250153 791 ## LVIS_0915 hypothetical protein - Term 1250164 - 1250223 13.0 1148 716 Tu 1 . - CDS 1250250 - 1251632 1225 ## COG0477 Permeases of the major facilitator superfamily - Prom 1251812 - 1251871 5.3 + Prom 1252337 - 1252396 4.3 1149 717 Op 1 . + CDS 1252450 - 1253199 755 ## LVIS_0439 sugar phosphate isomerase/epimerase 1150 717 Op 2 . + CDS 1253202 - 1254491 1121 ## LVIS_0440 H+/gluconate symporter related permease 1151 717 Op 3 1/0.178 + CDS 1254540 - 1255499 925 ## COG0524 Sugar kinases, ribokinase family 1152 717 Op 4 4/0.046 + CDS 1255500 - 1256123 671 ## COG0269 3-hexulose-6-phosphate synthase and related proteins 1153 717 Op 5 . + CDS 1256120 - 1256662 598 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation + Term 1256704 - 1256745 1.3 + Prom 1256698 - 1256757 4.8 1154 718 Tu 1 . + CDS 1256816 - 1257802 730 ## COG1609 Transcriptional regulators + Term 1257828 - 1257869 -0.8 1155 719 Tu 1 . - CDS 1258171 - 1258473 182 ## gi|227509037|ref|ZP_03939086.1| conserved hypothetical protein - Prom 1258503 - 1258562 7.3 + Prom 1258498 - 1258557 5.6 1156 720 Op 1 . + CDS 1258584 - 1259216 417 ## COG3338 Carbonic anhydrase 1157 720 Op 2 . + CDS 1259249 - 1259719 346 ## COG3600 Uncharacterized phage-associated protein + Term 1259747 - 1259811 8.2 - Term 1259733 - 1259797 8.2 1158 721 Tu 1 . - CDS 1259816 - 1260061 193 ## Lbuc_0113 hypothetical protein - Prom 1260108 - 1260167 8.2 - Term 1260331 - 1260389 3.6 1159 722 Tu 1 . - CDS 1260399 - 1260713 168 ## gi|227509041|ref|ZP_03939090.1| hypothetical protein HMPREF0496_1204 - Prom 1260850 - 1260909 5.6 - Term 1260811 - 1260845 -0.3 1160 723 Tu 1 . - CDS 1260948 - 1261841 424 ## Lbuc_0576 hypothetical protein - Prom 1261920 - 1261979 5.4 + Prom 1261974 - 1262033 7.0 1161 724 Tu 1 . + CDS 1262056 - 1262295 286 ## gi|227509043|ref|ZP_03939092.1| hypothetical protein HMPREF0496_1206 + Term 1262380 - 1262419 2.3 + Prom 1262324 - 1262383 5.5 1162 725 Tu 1 . + CDS 1262513 - 1264258 1332 ## LVIS_2083 hypothetical protein + Prom 1264361 - 1264420 7.9 1163 726 Tu 1 . + CDS 1264517 - 1265389 729 ## gi|227509045|ref|ZP_03939094.1| hypothetical protein HMPREF0496_1208 + Term 1265403 - 1265452 5.0 + Prom 1265784 - 1265843 6.1 1164 727 Tu 1 . + CDS 1265881 - 1267773 2076 ## Lbuc_0569 hypothetical protein + Term 1267790 - 1267851 13.2 + Prom 1267870 - 1267929 5.5 1165 728 Tu 1 . + CDS 1267965 - 1269641 1196 ## Lbuc_0577 hypothetical protein + Term 1269687 - 1269745 14.1 + Prom 1270094 - 1270153 4.6 1166 729 Tu 1 . + CDS 1270192 - 1271829 1264 ## Lbuc_0578 hypothetical protein + Term 1271893 - 1271944 16.5 + Prom 1272374 - 1272433 5.7 1167 730 Tu 1 . + CDS 1272552 - 1274219 1183 ## Lbuc_0580 hypothetical protein + Term 1274284 - 1274318 3.0 + Prom 1274523 - 1274582 4.2 1168 731 Tu 1 . + CDS 1274618 - 1275124 564 ## Lbuc_0578 hypothetical protein + Prom 1275126 - 1275185 35.2 1169 732 Tu 1 . + CDS 1275271 - 1275711 435 ## gi|227509052|ref|ZP_03939101.1| possible surface layer protein SlpC + Term 1275766 - 1275804 3.0 + Prom 1276389 - 1276448 3.1 1170 733 Tu 1 . + CDS 1276519 - 1277505 784 ## LVIS_1974 hypothetical protein + Term 1277526 - 1277588 14.1 + Prom 1277557 - 1277616 7.7 1171 734 Tu 1 . + CDS 1277749 - 1279614 1509 ## Lbuc_0802 hypothetical protein + Term 1279641 - 1279683 9.2 - Term 1279629 - 1279670 9.3 1172 735 Tu 1 . - CDS 1279737 - 1280954 978 ## Lbuc_0582 G-D-S-L family lipolytic protein - Prom 1281123 - 1281182 4.9 + Prom 1281082 - 1281141 5.5 1173 736 Tu 1 . + CDS 1281180 - 1282304 970 ## Lbuc_0583 hypothetical protein + Term 1282326 - 1282376 6.0 + Prom 1283354 - 1283413 8.5 1174 737 Tu 1 . + CDS 1283544 - 1284383 794 ## COG1015 Phosphopentomutase + Prom 1284420 - 1284479 2.5 1175 738 Op 1 . + CDS 1284514 - 1285794 1161 ## COG1972 Nucleoside permease 1176 738 Op 2 4/0.046 + CDS 1285825 - 1286511 570 ## COG2252 Permeases 1177 739 Op 1 . + CDS 1286631 - 1287137 440 ## COG2252 Permeases 1178 739 Op 2 . + CDS 1287169 - 1288086 1127 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase + Term 1288131 - 1288181 1.1 + Prom 1288125 - 1288184 8.2 1179 740 Tu 1 . + CDS 1288273 - 1289571 1045 ## COG2195 Di- and tripeptidases + Term 1289642 - 1289670 0.5 + Prom 1289726 - 1289785 6.8 1180 741 Op 1 15/0.000 + CDS 1289829 - 1290566 777 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 1181 741 Op 2 25/0.000 + CDS 1290578 - 1291345 821 ## COG1192 ATPases involved in chromosome partitioning 1182 741 Op 3 1/0.178 + CDS 1291335 - 1292219 844 ## COG1475 Predicted transcriptional regulators 1183 741 Op 4 4/0.046 + CDS 1292310 - 1292504 180 ## COG4481 Uncharacterized protein conserved in bacteria 1184 741 Op 5 . + CDS 1292529 - 1293629 1368 ## COG0012 Predicted GTPase, probable translation factor 1185 741 Op 6 . + CDS 1293664 - 1294401 712 ## COG4858 Uncharacterized membrane-bound protein conserved in bacteria + Term 1294512 - 1294570 14.3 + Prom 1294622 - 1294681 8.8 1186 742 Tu 1 . + CDS 1294814 - 1295965 1229 ## COG0516 IMP dehydrogenase/GMP reductase + Term 1296006 - 1296055 13.1 + Prom 1295999 - 1296058 4.3 1187 743 Op 1 . + CDS 1296130 - 1296513 350 ## PEPE_1346 hypothetical protein 1188 743 Op 2 . + CDS 1296519 - 1297340 642 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs + Term 1297357 - 1297392 0.4 - Term 1297347 - 1297377 0.0 1189 744 Tu 1 . - CDS 1297406 - 1298035 531 ## COG5549 Predicted Zn-dependent protease - Prom 1298135 - 1298194 4.8 + Prom 1298099 - 1298158 5.4 1190 745 Tu 1 . + CDS 1298339 - 1299109 494 ## COG1051 ADP-ribose pyrophosphatase + Prom 1299132 - 1299191 6.1 1191 746 Tu 1 . + CDS 1299223 - 1300650 1176 ## COG1488 Nicotinic acid phosphoribosyltransferase + Prom 1300671 - 1300730 3.9 1192 747 Tu 1 . + CDS 1300768 - 1301178 339 ## COG0242 N-formylmethionyl-tRNA deformylase 1193 748 Tu 1 . - CDS 1301299 - 1301796 354 ## COG1247 Sortase and related acyltransferases + Prom 1301795 - 1301854 6.3 1194 749 Op 1 40/0.000 + CDS 1302071 - 1302760 670 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 1195 749 Op 2 . + CDS 1302863 - 1303969 877 ## COG0642 Signal transduction histidine kinase 1196 749 Op 3 . + CDS 1303988 - 1305253 1000 ## COG1686 D-alanyl-D-alanine carboxypeptidase + Term 1305330 - 1305369 6.6 + Prom 1305294 - 1305353 7.0 1197 750 Op 1 . + CDS 1305394 - 1306179 489 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) 1198 750 Op 2 . + CDS 1306197 - 1306526 291 ## Lbuc_0604 branched-chain amino acid transport + Term 1306545 - 1306593 8.6 - Term 1306533 - 1306581 12.4 1199 751 Tu 1 . - CDS 1306602 - 1306982 409 ## COG5506 Uncharacterized conserved protein - Prom 1307192 - 1307251 7.0 + Prom 1307241 - 1307300 9.1 1200 752 Tu 1 . + CDS 1307324 - 1307731 550 ## LVIS_2008 hypothetical protein + Term 1307766 - 1307825 15.2 + Prom 1307825 - 1307884 8.6 1201 753 Tu 1 . + CDS 1307918 - 1309123 1023 ## gi|227509085|ref|ZP_03939134.1| hypothetical protein HMPREF0496_1248 + Term 1309168 - 1309211 1.1 + Prom 1309242 - 1309301 9.1 1202 754 Tu 1 . + CDS 1309329 - 1310252 711 ## Lbuc_0606 lipoprotein + Term 1310279 - 1310326 4.5 + Prom 1310400 - 1310459 7.0 1203 755 Tu 1 . + CDS 1310587 - 1311549 804 ## COG0628 Predicted permease + Prom 1311606 - 1311665 5.5 1204 756 Op 1 . + CDS 1311687 - 1312382 775 ## COG0588 Phosphoglycerate mutase 1 1205 756 Op 2 . + CDS 1312414 - 1312545 67 ## gi|227509089|ref|ZP_03939138.1| hypothetical protein HMPREF0496_1252 - Term 1312467 - 1312517 12.7 1206 757 Op 1 . - CDS 1312542 - 1313198 675 ## COG4221 Short-chain alcohol dehydrogenase of unknown specificity 1207 757 Op 2 . - CDS 1313218 - 1313760 202 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) - Prom 1313810 - 1313869 7.0 + Prom 1314202 - 1314261 51.2 1208 758 Op 1 . + CDS 1314332 - 1315774 1334 ## COG0531 Amino acid transporters + Term 1315791 - 1315832 6.6 + Prom 1315912 - 1315971 9.1 1209 758 Op 2 . + CDS 1316142 - 1316801 576 ## Lbuc_0833 hypothetical protein + Term 1316808 - 1316871 19.3 1210 759 Tu 1 . - CDS 1316933 - 1317538 608 ## COG4300 Predicted permease, cadmium resistance protein - Prom 1317562 - 1317621 6.2 + Prom 1317618 - 1317677 4.7 1211 760 Op 1 . + CDS 1317706 - 1318122 224 ## COG0394 Protein-tyrosine-phosphatase 1212 760 Op 2 . + CDS 1318205 - 1319026 626 ## Lbuc_2079 hypothetical protein 1213 760 Op 3 . + CDS 1319029 - 1319865 613 ## Lbuc_2080 hypothetical protein + Term 1319890 - 1319941 6.4 - Term 1319878 - 1319929 6.4 1214 761 Tu 1 . - CDS 1319950 - 1320609 473 ## BMQ_pBM50082 hypothetical protein - Prom 1320736 - 1320795 6.8 + Prom 1320658 - 1320717 4.6 1215 762 Tu 1 . + CDS 1320802 - 1321038 305 ## gi|227509099|ref|ZP_03939148.1| hypothetical protein HMPREF0496_1262 + Term 1321157 - 1321200 9.1 1216 763 Op 1 . + CDS 1321472 - 1322098 591 ## Lbuc_2011 cation efflux protein + Prom 1322214 - 1322273 2.6 1217 763 Op 2 . + CDS 1322293 - 1322532 252 ## COG0640 Predicted transcriptional regulators + Term 1322562 - 1322621 12.1 + Prom 1322564 - 1322623 4.0 1218 764 Op 1 . + CDS 1322698 - 1322904 122 ## gi|227509102|ref|ZP_03939151.1| hypothetical protein HMPREF0496_1265 + Prom 1322988 - 1323047 6.4 1219 764 Op 2 . + CDS 1323083 - 1323982 797 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis + Term 1323998 - 1324061 20.0 - Term 1323991 - 1324043 4.1 1220 765 Tu 1 . - CDS 1324052 - 1324468 380 ## COG0789 Predicted transcriptional regulators - Prom 1324565 - 1324624 5.0 + Prom 1324411 - 1324470 3.2 1221 766 Tu 1 . + CDS 1324580 - 1325596 967 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) + Prom 1325599 - 1325658 6.3 1222 767 Op 1 . + CDS 1325867 - 1326313 395 ## COG3682 Predicted transcriptional regulator + Term 1326408 - 1326458 1.1 + Prom 1326376 - 1326435 4.6 1223 767 Op 2 . + CDS 1326525 - 1326713 236 ## gi|227509107|ref|ZP_03939156.1| hypothetical protein HMPREF0496_1270 + Term 1326761 - 1326813 12.0 - Term 1326739 - 1326805 17.1 1224 768 Tu 1 . - CDS 1326850 - 1328205 1032 ## LEUM_1317 hypothetical protein - Prom 1328417 - 1328476 7.1 + Prom 1328348 - 1328407 6.0 1225 769 Tu 1 . + CDS 1328451 - 1329968 1260 ## COG0531 Amino acid transporters + Term 1329989 - 1330020 0.0 + Prom 1329991 - 1330050 2.6 1226 770 Op 1 . + CDS 1330100 - 1330876 427 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis 1227 770 Op 2 . + CDS 1330938 - 1331603 424 ## COG2231 Uncharacterized protein related to Endonuclease III + Term 1331635 - 1331682 7.2 + Prom 1331701 - 1331760 8.1 1228 771 Tu 1 . + CDS 1331801 - 1332667 824 ## COG4975 Putative glucose uptake permease + Term 1332737 - 1332785 -0.8 1229 772 Tu 1 . - CDS 1332681 - 1332914 228 ## - Term 1332957 - 1332991 5.3 1230 773 Op 1 4/0.046 - CDS 1333015 - 1334412 305 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 1231 773 Op 2 . - CDS 1334396 - 1335766 929 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases - Prom 1335839 - 1335898 7.5 1232 774 Tu 1 . + CDS 1336110 - 1336580 338 ## COG2606 Uncharacterized conserved protein + Term 1336660 - 1336696 1.5 + Prom 1336670 - 1336729 7.7 1233 775 Tu 1 . + CDS 1336806 - 1338179 1369 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family + Term 1338267 - 1338319 11.1 - Term 1338306 - 1338351 7.1 1234 776 Op 1 . - CDS 1338414 - 1338569 75 ## - Prom 1338624 - 1338683 2.1 1235 776 Op 2 . - CDS 1338688 - 1339347 369 ## COG1309 Transcriptional regulator - Prom 1339388 - 1339447 7.0 + Prom 1339347 - 1339406 9.0 1236 777 Tu 1 . + CDS 1339604 - 1340974 1194 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family 1237 778 Tu 1 . + CDS 1341627 - 1342535 652 ## COG0598 Mg2+ and Co2+ transporters + Prom 1342605 - 1342664 4.5 1238 779 Op 1 . + CDS 1342788 - 1343642 776 ## COG2365 Protein tyrosine/serine phosphatase + Term 1343662 - 1343712 10.2 + Prom 1343694 - 1343753 3.8 1239 779 Op 2 . + CDS 1343785 - 1344030 271 ## gi|227509121|ref|ZP_03939170.1| hypothetical protein HMPREF0496_1284 + Term 1344053 - 1344107 19.0 - Term 1344041 - 1344095 7.6 1240 780 Tu 1 . - CDS 1344103 - 1344522 393 ## gi|227509122|ref|ZP_03939171.1| hypothetical protein HMPREF0496_1285 - Prom 1344562 - 1344621 3.5 1241 781 Tu 1 . - CDS 1344671 - 1345624 649 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases - Prom 1345804 - 1345863 3.5 - Term 1345787 - 1345828 3.2 1242 782 Tu 1 . - CDS 1345901 - 1346920 914 ## COG0524 Sugar kinases, ribokinase family - Prom 1346966 - 1347025 5.2 - Term 1346999 - 1347039 4.3 1243 783 Tu 1 . - CDS 1347086 - 1347745 710 ## COG1802 Transcriptional regulators - Prom 1347774 - 1347833 5.4 + Prom 1347817 - 1347876 7.0 1244 784 Tu 1 . + CDS 1347933 - 1349012 820 ## COG1312 D-mannonate dehydratase + Term 1349044 - 1349094 6.1 - Term 1349025 - 1349089 8.3 1245 785 Tu 1 . - CDS 1349102 - 1350088 814 ## COG1609 Transcriptional regulators - Prom 1350124 - 1350183 9.0 + Prom 1350165 - 1350224 5.6 1246 786 Op 1 . + CDS 1350404 - 1351813 1259 ## COG0477 Permeases of the major facilitator superfamily 1247 786 Op 2 . + CDS 1351855 - 1353519 1634 ## COG0366 Glycosidases 1248 787 Tu 1 . - CDS 1353665 - 1354309 787 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase - Prom 1354511 - 1354570 7.7 + Prom 1354309 - 1354368 5.6 1249 788 Op 1 . + CDS 1354611 - 1356515 1788 ## COG3250 Beta-galactosidase/beta-glucuronidase 1250 788 Op 2 . + CDS 1356502 - 1357464 815 ## COG3250 Beta-galactosidase/beta-glucuronidase + Term 1357521 - 1357564 10.6 - Term 1357510 - 1357550 1.5 1251 789 Tu 1 . - CDS 1357737 - 1357934 140 ## gi|227509133|ref|ZP_03939182.1| hypothetical protein HMPREF0496_1296 + Prom 1358177 - 1358236 6.6 1252 790 Tu 1 . + CDS 1358402 - 1359052 698 ## COG0657 Esterase/lipase - Term 1361379 - 1361438 12.1 1253 791 Op 1 1/0.178 - CDS 1361487 - 1361969 467 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 1254 791 Op 2 . - CDS 1362001 - 1362774 350 ## COG0384 Predicted epimerase, PhzC/PhzF homolog - Prom 1362798 - 1362857 6.5 + Prom 1362783 - 1362842 8.9 1255 792 Tu 1 . + CDS 1362876 - 1363745 758 ## COG0583 Transcriptional regulator - Term 1363743 - 1363790 0.5 1256 793 Op 1 . - CDS 1363856 - 1364296 313 ## COG2153 Predicted acyltransferase 1257 793 Op 2 . - CDS 1364306 - 1364740 171 ## COG1846 Transcriptional regulators - Prom 1364777 - 1364836 8.9 - Term 1364836 - 1364897 13.5 1258 794 Tu 1 . - CDS 1364928 - 1366550 1617 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 1366631 - 1366690 6.4 - Term 1366771 - 1366826 19.1 1259 795 Tu 1 . - CDS 1366931 - 1367236 292 ## gi|227509142|ref|ZP_03939191.1| hypothetical protein HMPREF0496_1305 - Prom 1367338 - 1367397 7.0 + Prom 1367546 - 1367605 4.9 1260 796 Tu 1 . + CDS 1367631 - 1368179 395 ## Lbuc_0627 abortive infection protein + Term 1368299 - 1368353 9.8 1261 797 Tu 1 . - CDS 1368341 - 1368790 248 ## gi|227509144|ref|ZP_03939193.1| hypothetical protein HMPREF0496_1307 - Prom 1368826 - 1368885 7.0 + Prom 1368875 - 1368934 6.9 1262 798 Tu 1 . + CDS 1368988 - 1369425 231 ## gi|227509145|ref|ZP_03939194.1| hypothetical protein HMPREF0496_1308 + Term 1369488 - 1369539 1.1 - Term 1369474 - 1369526 3.1 1263 799 Tu 1 . - CDS 1369567 - 1369761 148 ## gi|227509146|ref|ZP_03939195.1| hypothetical protein HMPREF0496_1309 - Prom 1369903 - 1369962 4.6 - Term 1369916 - 1369951 7.4 1264 800 Tu 1 . - CDS 1369974 - 1370795 730 ## Lbuc_0628 peptidase M10A and M12B matrixin and adamalysin - Prom 1370912 - 1370971 5.5 + Prom 1370781 - 1370840 5.7 1265 801 Tu 1 . + CDS 1370972 - 1372405 814 ## COG0226 ABC-type phosphate transport system, periplasmic component + Term 1372508 - 1372547 -0.3 - Term 1372312 - 1372348 4.1 1266 802 Tu 1 . - CDS 1372456 - 1372947 441 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 1372976 - 1373035 4.3 + Prom 1372953 - 1373012 4.7 1267 803 Op 1 . + CDS 1373045 - 1374520 1288 ## COG0477 Permeases of the major facilitator superfamily + Term 1374549 - 1374593 9.1 + Prom 1374675 - 1374734 5.5 1268 803 Op 2 . + CDS 1374770 - 1376803 1441 ## COG3158 K+ transporter + Term 1376897 - 1376960 21.4 - Term 1376886 - 1376947 6.1 1269 804 Tu 1 . - CDS 1376981 - 1377337 358 ## Lbuc_0631 hypothetical protein - Prom 1377510 - 1377569 11.0 + Prom 1377840 - 1377899 10.9 1270 805 Tu 1 . + CDS 1378018 - 1378965 921 ## Htur_2076 hypothetical protein + Term 1379109 - 1379157 9.1 - Term 1379097 - 1379143 8.2 1271 806 Tu 1 . - CDS 1379161 - 1380066 602 ## COG4189 Predicted transcriptional regulator - Prom 1380105 - 1380164 8.5 + Prom 1380264 - 1380323 7.5 1272 807 Tu 1 . + CDS 1380518 - 1381969 1408 ## COG3534 Alpha-L-arabinofuranosidase + Prom 1381977 - 1382036 4.1 1273 808 Tu 1 . + CDS 1382079 - 1383365 1389 ## COG0477 Permeases of the major facilitator superfamily + Term 1383407 - 1383468 -0.4 + Prom 1383414 - 1383473 5.5 1274 809 Op 1 . + CDS 1383496 - 1385796 1531 ## COG3534 Alpha-L-arabinofuranosidase 1275 809 Op 2 . + CDS 1385821 - 1386015 217 ## MPTP_0197 hypothetical protein + Term 1386245 - 1386313 30.4 1276 810 Op 1 . + CDS 1386340 - 1386624 75 ## Lbuc_1953 hypothetical protein 1277 810 Op 2 . + CDS 1386716 - 1388536 1404 ## COG3533 Uncharacterized protein conserved in bacteria 1278 810 Op 3 . + CDS 1388585 - 1388959 354 ## Lbuc_0621 hypothetical protein + Term 1388979 - 1389036 14.1 1279 811 Op 1 . - CDS 1389746 - 1390522 562 ## MPTP_1982 hypothetical protein 1280 811 Op 2 . - CDS 1390568 - 1392955 1060 ## BT_0264 hypothetical protein - Prom 1393020 - 1393079 5.8 1281 812 Tu 1 . + CDS 1393300 - 1395900 1632 ## Sked_04330 putative carbohydrate binding protein + Term 1395931 - 1395977 1.9 + Prom 1395924 - 1395983 5.0 1282 813 Tu 1 . + CDS 1396164 - 1397141 841 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) + Term 1397161 - 1397199 -1.0 1283 814 Tu 1 . - CDS 1397344 - 1397784 526 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 1397822 - 1397881 6.2 + Prom 1397900 - 1397959 5.1 1284 815 Op 1 . + CDS 1398034 - 1398492 406 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 1285 815 Op 2 . + CDS 1398506 - 1399450 701 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Term 1399478 - 1399541 18.4 - Term 1399471 - 1399525 5.5 1286 816 Op 1 36/0.000 - CDS 1399553 - 1402303 1651 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 1287 816 Op 2 . - CDS 1402314 - 1403018 181 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 1403051 - 1403110 3.5 + Prom 1403084 - 1403143 6.4 1288 817 Tu 1 . + CDS 1403313 - 1403924 569 ## COG1309 Transcriptional regulator + Prom 1404014 - 1404073 5.5 1289 818 Tu 1 . + CDS 1404096 - 1404332 323 ## Lbuc_0638 hypothetical protein + Prom 1404751 - 1404810 66.3 1290 819 Op 1 4/0.046 + CDS 1404931 - 1405902 965 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases + Prom 1405904 - 1405963 3.7 1291 819 Op 2 . + CDS 1405994 - 1406728 244 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 1406763 - 1406806 8.1 - Term 1406827 - 1406889 5.1 1292 820 Tu 1 . - CDS 1406894 - 1407154 359 ## gi|227512064|ref|ZP_03942113.1| hypothetical protein HMPREF0497_1186 - Prom 1407275 - 1407334 4.8 + Prom 1407215 - 1407274 4.4 1293 821 Op 1 . + CDS 1407307 - 1407495 76 ## 1294 821 Op 2 . + CDS 1407547 - 1407873 241 ## gi|227509181|ref|ZP_03939230.1| hypothetical protein HMPREF0496_1344 + Term 1407892 - 1407945 9.5 - Term 1407880 - 1407933 13.3 1295 822 Tu 1 . - CDS 1407955 - 1409151 1171 ## COG1686 D-alanyl-D-alanine carboxypeptidase - Term 1409635 - 1409689 12.2 1296 823 Op 1 . - CDS 1409736 - 1410614 717 ## Lbuc_1799 lipoprotein 1297 823 Op 2 . - CDS 1410627 - 1411289 684 ## LPST_C2308 hypothetical protein 1298 823 Op 3 . - CDS 1411304 - 1412242 839 ## Lbuc_1800 glycoside hydrolase family 25 - Prom 1412344 - 1412403 4.6 + Prom 1412250 - 1412309 4.0 1299 824 Tu 1 . + CDS 1412545 - 1412616 75 ## + Term 1412824 - 1412873 3.1 1300 825 Tu 1 . - CDS 1412640 - 1413656 798 ## COG0524 Sugar kinases, ribokinase family - Prom 1413693 - 1413752 2.2 - Term 1413835 - 1413877 7.6 1301 826 Op 1 . - CDS 1413906 - 1414607 519 ## COG5523 Predicted integral membrane protein - Term 1414638 - 1414679 -0.4 1302 826 Op 2 . - CDS 1414702 - 1415106 317 ## LVIS_2008 hypothetical protein 1303 826 Op 3 . - CDS 1415147 - 1415824 419 ## COG0518 GMP synthase - Glutamine amidotransferase domain 1304 826 Op 4 . - CDS 1415843 - 1416229 404 ## Lbuc_0647 hypothetical protein - Prom 1416409 - 1416468 5.1 + Prom 1416248 - 1416307 4.7 1305 827 Tu 1 . + CDS 1416441 - 1417091 404 ## COG1272 Predicted membrane protein, hemolysin III homolog + Prom 1417479 - 1417538 7.2 1306 828 Tu 1 . + CDS 1417581 - 1418858 1323 ## COG0141 Histidinol dehydrogenase + Term 1418899 - 1418949 11.4 + Prom 1419240 - 1419299 8.7 1307 829 Tu 1 . + CDS 1419321 - 1419752 348 ## Lbuc_0650 hypothetical protein + Term 1419855 - 1419902 -0.7 + Prom 1419813 - 1419872 7.7 1308 830 Tu 1 . + CDS 1419965 - 1420477 521 ## Lbuc_0651 hypothetical protein + Term 1420622 - 1420663 3.0 + Prom 1420680 - 1420739 4.4 1309 831 Op 1 . + CDS 1420789 - 1421967 866 ## COG2814 Arabinose efflux permease 1310 831 Op 2 . + CDS 1421988 - 1422692 604 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 1311 831 Op 3 . + CDS 1422770 - 1423579 545 ## COG5523 Predicted integral membrane protein + Term 1423601 - 1423646 7.2 1312 832 Tu 1 . - CDS 1423661 - 1424794 1075 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases - Prom 1424886 - 1424945 2.9 + Prom 1425230 - 1425289 6.0 1313 833 Tu 1 . + CDS 1425326 - 1426495 1082 ## COG1454 Alcohol dehydrogenase, class IV + Term 1426568 - 1426612 6.2 + Prom 1426685 - 1426744 3.7 1314 834 Tu 1 . + CDS 1426814 - 1427320 393 ## Lbuc_0657 hypothetical protein + Term 1427369 - 1427417 3.0 + Prom 1427396 - 1427455 8.2 1315 835 Op 1 . + CDS 1427480 - 1428463 654 ## COG1088 dTDP-D-glucose 4,6-dehydratase 1316 835 Op 2 . + CDS 1428479 - 1429342 943 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases - Term 1429404 - 1429434 2.0 1317 836 Tu 1 . - CDS 1429450 - 1429650 221 ## Lbuc_0660 hypothetical protein - Prom 1429677 - 1429736 7.0 + Prom 1429760 - 1429819 8.3 1318 837 Tu 1 . + CDS 1429947 - 1430390 336 ## Lbuc_0661 regulatory protein MerR + Term 1430442 - 1430497 10.0 - Term 1430507 - 1430550 -0.8 1319 838 Tu 1 . - CDS 1430557 - 1430766 271 ## Lbuc_0662 hypothetical protein - Prom 1430809 - 1430868 5.7 + Prom 1430874 - 1430933 6.7 1320 839 Tu 1 . + CDS 1430989 - 1431642 528 ## Lbuc_0663 hypothetical protein + Term 1431819 - 1431860 -1.0 + Prom 1431755 - 1431814 3.7 1321 840 Tu 1 . + CDS 1431946 - 1433202 620 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 + Term 1433280 - 1433326 12.0 Predicted protein(s) >gi|238617817|gb|GG669604.1| GENE 1 335 - 1513 728 392 aa, chain + ## HITS:1 COG:SPy1637 KEGG:ns NR:ns ## COG: SPy1637 COG0183 # Protein_GI_number: 15675510 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 390 1 392 395 350 47.0 2e-96 MEKIVIINAKRTPIGKLNGALKDKSAVELATEVSKALIKTAKIPIEDINQVIFGNAIQAG NGQNIARQIELNSGLSAKTTAFTINQVCGSGLKAIRQAQIELLIGGHKTILAGGTESMSN VPFLNMNQRQPTKFGSFTVYDGLERDGLTDAFSNRPMGITAENVAKIYHVSRKQQDQFAL DSHLKAQDAINHHYFDEELVPIQTTNKKKSTLVSQDESVRFDTSLEKLSTLPPSFETNGT VTAGNAAGLNDGASALLLTTESHAKQLNLTPLAEIIDYAEQGIDPNIMGYAPYHAIKKLL TNQKMQVTDIDLFEINEAFASQCIAVSRDLSIPEYKLNISGGAIALGHPLGDSGARIVTT LINNLNRTGQTYGIASLCMGGGMGSAMLIKKY >gi|238617817|gb|GG669604.1| GENE 2 1601 - 3172 870 523 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2178 NR:ns ## KEGG: Lbuc_2178 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 4 523 2 527 528 325 35.0 2e-87 MVKDDASIKSHKSDQLAGVKRTFRLFGSVVSKLLGENTYAKSTIYSERIIRGAHSSLNHP LNAGLSLAEFKMAKSSQLGYLAAVKDLMTINFNQFSFMIAWATGEETPEIVNQATGRNYA AYLGESRDERQFTLGYQTAVIHFVQAISGEGGFLPTIMDRLAGFSIKEASQMADAWFSHI NRYLRNVSPYKKLTATSDSHIVKGMINEYDSGFLTQYQISGRTLFQYSSDDGPDFSDQHD LPPIIVRSLADNHLKDAVRQFIKRDVTGLIDLMVSVVLYAICREQLTVDNYDLLGIPALM TSTDRTAIASSLEMNETIILLKMGIPATIVKSAEKMAILDLSDVAHTRNADNQNFQQIFS YVLGPLHKPIINDFHQKIEIDYGTFDQLFTGMLKKLLLPLLLNYSFARNRALLFARQHLS FDLTSLADTIPVKPTTLTEHVEYIAVVHVAHFSGLIGRGMANYTNLTQADSLSAFSHLMK ADPVFRSLDSAYDLRSKSTKKVLYWLYQSSFFKELPESERVRL >gi|238617817|gb|GG669604.1| GENE 3 3300 - 3515 292 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227507842|ref|ZP_03937891.1| ## NR: gi|227507842|ref|ZP_03937891.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 71 13 83 83 76 100.0 5e-13 MGKLKNESDKVVGKTKEGLGEASGDDKMKLKGKLQNASGKAKEKLEDAKDKVAEKANEFL DKHEKNNKEDN >gi|238617817|gb|GG669604.1| GENE 4 3682 - 4215 664 177 aa, chain + ## HITS:1 COG:L36177 KEGG:ns NR:ns ## COG: L36177 COG0454 # Protein_GI_number: 15674159 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 5 174 3 165 169 140 44.0 1e-33 MSATYLRQATNQDLPEIRKIITDAKAFLKKQGIDQWQDGYPTDEDLETDVKFGITYVLII DGKIAATAALHQGLDVSYLQIHDGEWLNGVHGRYTAIHRIAMSADFRGQHLSEKMITGLI TISSVLGYKDVRIDTHPDNKGMQHVITTNGFTKRGTIYMEEKDHEASPRYAYQLIIE >gi|238617817|gb|GG669604.1| GENE 5 4278 - 4469 252 63 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2181 NR:ns ## KEGG: Lbuc_2181 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 63 1 63 63 63 69.0 3e-09 MALSDADVKTALITMYVIGIICLGITFFLLDKVNGQFFTKFSTGLIVIVLIMGVILVNLF SLS >gi|238617817|gb|GG669604.1| GENE 6 4684 - 5829 1060 381 aa, chain - ## HITS:1 COG:L0181 KEGG:ns NR:ns ## COG: L0181 COG0626 # Protein_GI_number: 15672763 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Lactococcus lactis # 1 380 1 379 380 399 53.0 1e-111 MTKFNTLLVRGGKPDDNHTGAVNVPIYNSSTYRYPKLGSDVRWDYERSGNPTRDNVENVC AELENGDRGFAFSSGMAAIHAALSLFKPGDHIIIGDNIYGGTFRLVNDFLKPRGIKFSEV DTQNIQALEEAFTPETKAVYFETVTNPLLKVSSVKQISKVAHEHDAMVIVDNTFLTPYLQ KPLDLGADLVLHSATKYLGGHSDMTAGIIVTRTKELSDKVYTLQNSIGAILAPQEANLLR RGIQTLNLRMDRHIVNAKKIIKYLERSDKVGRVYYPTVDKNSIDYAIIKDEARGAGGVLS FELKDGLDAAKFVNSLQLIILAVSLGAAESLVEVPAFMSHFEIPKPDRLAMGIKDELIRL SVGLEDADDLIADLDQAFKKI >gi|238617817|gb|GG669604.1| GENE 7 6294 - 6854 441 186 aa, chain - ## HITS:1 COG:BS_yciB KEGG:ns NR:ns ## COG: BS_yciB COG1376 # Protein_GI_number: 16077404 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 185 1 193 194 142 40.0 2e-34 MRKYLQIITAIVLALLLTGCGSDHADSHHRTDSEKNRSVKVINWKKPSQNKPYPKITTNN GRFLQVSLKKQRVYVMSPKHRVLYTMYASTGIHHSTPKGTYHIQQERGNFFYNGDSREGA HYWTSWKDHGIYLFHTVPTNAEGQYIKSEAQHLGKKANSHGCIRLSIPDAKWINRTVPMG TKVVID >gi|238617817|gb|GG669604.1| GENE 8 6948 - 10712 2844 1254 aa, chain - ## HITS:1 COG:lin2368 KEGG:ns NR:ns ## COG: lin2368 COG1074 # Protein_GI_number: 16801431 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Listeria innocua # 3 1253 14 1229 1235 634 32.0 0 MQYTPDQQRAIKDRPDGNVLVSASAGSGKTRVLVDRIIDMVKNQGINIDQLLVVTFTNAA AKEMRERLRGSLQSEFSKATDPESKKHLLTQIRKVAVADITTMDAYCQKLVSRYYYILGI DPNFRVLSDNTEIQLLKEQVWDNVREALYGQDEDHTFADLTENFSNDRSDEGLTNVIFQM DEFANVNEDPDKWLNDAASFYEIGDQGLIHSELYTALISREVSDAVKRLVISHQAIIKMA QQAELEKDEALFTKQLESVTQLQKGVIEAADWDGLRQLITGFDFESMTKAKLTKDADEYQ KQVHKLVKGTNDQMKKQWQKLVTGYFAWNEQDNVDLMNAAKARIEKLVTVVRTFRAAYKQ AKARRHLMQFIDIEHAAYDILNDVSEQAKQVRQRLQDQYYEIMTDEYQDNNRLQDAILNK IARSDRGNRFMVGDVKQSIYRFRLADPTMFIKKQAQYIEQDNDNELISLSENFRSAKNID DFTNLVFEQTMDHQVGDIAYTGKSKLQFGATYYPDDMKADASLIIYRTKSSVAATSNEDL GAGDQIEDSDSGQAEIIAQKIRTLVDDKQLIYDKKLEEMRPVTFGDIAIISPTHNNELTL SDIFTQYGIPAEITGAKSYFKTTEIQIMMSLLSIIDNPFQDIALVAVLRSPIVGLDENQL AFLRINRNTGNYYQAVLDFYRGFDRLEPNDYATRIYQKVDRFMKQLRRFKDVAQQDGLVS LIWDIYDQTGYLDYVGGMPAGLQRQTNLHALYDRAADYEKNGFKGLFQFVKFIQRMQERD NDLANANPTTSENTVHVMTIHGSKGLQFPIVFLNDVGKQFNMQDTIGKYVLNDHWGIGID YLNNQTREFRSPLQKQAILDMTKNAGLSEEMRKLYVAMTRAEQRLYLVAKVKGEKSGDNQ QLIQGWQGLTDANELVLPAAVRNAAKSYLGWIGPAISRHPNVLDRFGDSIHSNVLAGDPT LFNLDFYDDERITKASGRQKANQTSPNDFIDQLAQKKLTVAQPTKAAISQVMTFKYPHTA ATKTTAYQSVSEIKRLFDDPDNTQLSGYSTLDVNKLAKTGRYLKTDFEVPQFISEGGGKP APTEIGTATHLVLQQIDLTTVPTVEHIEALIANLVKQQVISSAVASQINVDEVLRFYQSE VGEYVLANPESTHREAPFSLLMKARDVFKDFQDNDEQTILIHGIIDGYVVTDEAVYLFDY KTDHITPKTTISDIIDRYRGQLELYGLALSKILGRPITHKYLYLLSANQAVQVG >gi|238617817|gb|GG669604.1| GENE 9 10712 - 14257 2265 1181 aa, chain - ## HITS:1 COG:BS_addB KEGG:ns NR:ns ## COG: BS_addB COG3857 # Protein_GI_number: 16078126 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Bacillus subtilis # 1 1180 1 1159 1166 468 28.0 1e-131 MTLQFVLGTNGYDHQEKMIDILKKQKSAHPDDQFFYLVPNHIKFESEVGILKRLAGANDD VTAQSSVQVLSFTRLAWYFLRTTSQYQKQRISPAGINMLLYQIMTEHQDDLILFSQEAGL PGFIDQIAHQISVMQAGNILPEDLMKMNENQESRLSNDLRDKLHDFSIIYAEYEKRIDDQ YFDNHNVLNLLSDYLQRQDLSHYHFYISDFSKFTAQECRLVETLTQGGASMTMSLILDKP YRTALPDQPNLFYQSAKLFLRFYKFAADNQIPYLPIITADQPRISADLLKLEKFWIQSSG LGAIDDNPITVSKSIQVYQADNQYSELDQMATRIRQMVSTGKYRYSDFLILTRHLDSYET ILDSIFTMQQIPYFRDIQKSMVDHPLVELLGALFDMYDPDRPRNYRYDDVMRFLKSELVL PQATDGTAMKIDDYRQAVSLTENLVLKNGFEGKKWIQDDDWQYVWVADDDDGTVLTDKDK RITQQINVIRHLVKNALPNFYNRFYKAKTNADAAGILYRFLVENGVVNRLQDWRNAAVDR QDINRSDEIEQVWRTFCSLLDENVRILGDKPFVAQDFWALIYAGFEGATYSQIPSTLDQV QISESGMVQMNNRKVTMMIGSNDETMPERIVNESLFGDDDVSQIQDNLSDSQYLNDPADE QMAAEPYLNYLAFTSPSSRLIFSYTNHVNDESGINLSPYVSRIAAHFNLKVVNYAAVPDN QRAVNVYIGSKRATLHHLIQVIQDTYKNKGQLNDTWAFIFNQLKQDPDAAPLTNRLLGSI DYKNVPVPLSREIAEKLYGSALNISISQLESFYENPYEYFLKYGLRLQEREQFELSPAST GQFFHEALDRIISMVHEQKIDLAGLSDRDVDDLVAENVEAMVNDPDNFQYIILNSSNRMH YITLQLQATIQQMIRTMRDQQRITPMRPQNTELIFGQPSSKGLKGLSFELPNQKKVNVRG RIDRIDSMKVNDKRYFGIVDYKSADKKFDFNQAYIGTSMQLLTYLDVLRYNLSTLNPDSS DALLAGALYMHIYNATFKPDDFKKGLEKSLLTQHKYKGILVDDVDLVDHLDTDLAKDHGH SLVYPFNKLANGNVGKNSSTITENDLNAFLDRTEKLIIDASERIFDGDTSLAPVKIDNVT PLQFTSYQSIMNFDPLLPENNYRLVPHYDKKDIISKLRGEK >gi|238617817|gb|GG669604.1| GENE 10 14407 - 14628 113 73 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHPLFDLNESFMLALILFTRTFRPLRFNIGSKNLRSTPNISFKFKKVGSSSLLITPGSNQ AVHTISYIPLKVK >gi|238617817|gb|GG669604.1| GENE 11 14760 - 15134 413 124 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2185 NR:ns ## KEGG: Lbuc_2185 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 117 1 117 117 157 74.0 2e-37 MAIKLDPEQIKQLKEQLYTANRSSHFVIIVAISKQENTSVKMVTDWNNYLNMKTTNSDKF DFHVIRDILPITDNLVYWAVAQQNLHTAQTQGQQSEKVVDDLEFYTNKVMSENKVRSAEA SGNN >gi|238617817|gb|GG669604.1| GENE 12 15183 - 15749 261 188 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2186 NR:ns ## KEGG: Lbuc_2186 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 184 1 184 191 194 55.0 1e-48 MKKLLILNQHSPVVSELLPLLDESDEISYRIFQGNIQSAGDYVTALRGVDWLLSALGPED VDLDFEELFDAIDQAAPKIQHFVMLSYAGIDDELKSPMVFPEVKNRQEFIKQQRYAIKIV DESEIPYSIIRMSSLMDGKRSDYQLFNEGNKMSVGSVSAKNVADLIFDAFVNQKLINHSV GIMDSGND >gi|238617817|gb|GG669604.1| GENE 13 15836 - 16783 939 315 aa, chain + ## HITS:1 COG:BS_iolS KEGG:ns NR:ns ## COG: BS_iolS COG0667 # Protein_GI_number: 16081029 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Bacillus subtilis # 3 311 2 309 310 334 52.0 1e-91 MAKNVTIGQSKVTTTPLGLGTNAVGGHNLFPNLDEQTGMATVKAALDSGITMLDTAYAYG LGRSEELIGQVIKNYDRSKLTIATKGAQLVKDGQSTISNAPDDLKRFVESSLKRLQTDYL DIFYIHFPDENTAKDKAVAALQELKDQGLIRAIGVSNFSPAQLKEANKNHQVDVIENQYS LIHRDPENHLFPYLHQEHISFVPFFPLASGLLTGKYDETPRKFPEDDLRSQDPNFSGSRF KAIVESVNSLQPIADNHDATIAQIVLAWYIKNPAVSVVIPGAKSPEQVQSNVKALSIVLS DEEFNTIDNAFKSFE >gi|238617817|gb|GG669604.1| GENE 14 17414 - 17644 205 76 aa, chain - ## HITS:1 COG:BH0737 KEGG:ns NR:ns ## COG: BH0737 COG1733 # Protein_GI_number: 15613300 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 7 59 60 112 118 58 50.0 3e-09 MYSSIDQLREMEEDQLITRTVIPGTQSKVVYSITDLGRSLMPILNQMYQWGEERISTLQV DPQFSINDQVTRDSGK >gi|238617817|gb|GG669604.1| GENE 15 18962 - 19123 84 53 aa, chain + ## HITS:1 COG:AF1281 KEGG:ns NR:ns ## COG: AF1281 COG0693 # Protein_GI_number: 11498880 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Archaeoglobus fulgidus # 1 51 117 167 168 59 52.0 1e-09 MTAYTTVRPDLYYAGAVVKDQPVVVDQNLVTSRTPDDLDAFNGSMLETLKRNA >gi|238617817|gb|GG669604.1| GENE 16 19396 - 20706 1367 436 aa, chain + ## HITS:1 COG:BS_yebB KEGG:ns NR:ns ## COG: BS_yebB COG2252 # Protein_GI_number: 16077704 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus subtilis # 8 434 4 439 440 416 56.0 1e-116 MLNSIAKFFDFEGRNTNFRKETIAGITTFVSMVYILFVNPNVLGVTGMDKGAIFTATALA SAFGCFLMGLLANYPIAISASLGINAFFAYSVVIGMKVSWQTALAGVFVASVIFIILTAL KLREKIIDSIPADFKAAIGGGIGLFIAFIGMNDGGLIQSSKDTLVSLGSLHVGTTWLTIF GLLVSVILMSMKVPGAIFIGMVLNAILGMVTGLIPLPHQWVAGIPSLAPTFGVALSHIGD INSLQLVVVVLTFLLVTFFDTAGTLVGLAEQAGFIKNNRIPRIGRALIADSSTMAVGSIL GTSPMGAFVESSAGIAVGGRTGFTAVVVGILFVLGTFFSPLLTVITSQVTAPALIIVGVL MAQSLKNVHWEKFEIAAPAFITLVGMPFTYSIADGIALGFITYPITMIAAKRGKEVSAMM YGLAVVFVIFLWILNS >gi|238617817|gb|GG669604.1| GENE 17 20819 - 21337 537 172 aa, chain + ## HITS:1 COG:lin0860 KEGG:ns NR:ns ## COG: lin0860 COG4708 # Protein_GI_number: 16799934 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 16 170 6 157 162 80 34.0 1e-15 MNSKTNVLGIDSVLDLTKAAVVAALYIALTMVFAAVSYGPIQFRFSEGLNNLVPFNKRYI VAITLACFITNIMSPNGAIDMVVGTAETLINLVTIYLVTKHMQSVVSKLIASVLIGTFYM FIIGFEIAIIGHSAFWPTFWSTYLTAGIGEFVTMAIGAIVIYLINLRYNLSD >gi|238617817|gb|GG669604.1| GENE 18 21446 - 21670 272 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227507858|ref|ZP_03937907.1| ## NR: gi|227507858|ref|ZP_03937907.1| hypothetical protein HMPREF0496_0021 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0021 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 74 16 89 89 131 100.0 2e-29 MNMKVTERLISESIRFVCILVLGTTLWITKQAGVVFWGVGLIVSLVAVFFSPGYILNKIV FNYFKKQHYQKKGK >gi|238617817|gb|GG669604.1| GENE 19 21966 - 23240 1208 424 aa, chain + ## HITS:1 COG:BH2678 KEGG:ns NR:ns ## COG: BH2678 COG0624 # Protein_GI_number: 15615241 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Bacillus halodurans # 3 424 5 426 427 456 50.0 1e-128 MASIKEQLLTTIDQYQGDLLKQLDRIVAFNTVSPPARNTAKLQQFIHDELEEYGFDAKQQ DFYDGDQLLSATKSGTHSDNHHSLILNGHVDVAALENRDEWQTDPFKLVKRGDTLIGRGV SDMKGAVAAYLFIFQLLKKLNIELPGDLKFQSVVGEELGEAGTKTLLKQGEKADFAIVGD TSGTHFQGQGGVITGWITLKSPHTYHDGNRISMVQTGGGLKAASMVEKMVVVISALQTLE RYWGITKSYPGFKPGTDTINPAYIKGGIHPAFVADECRLWITVHFYPNETVEGIEKEVED EVIAAAKADPWLRDNLPTFNWGGDSMLVDKGEVFPSLELDKNSAAMKLLNTSYQSSFGQK PVIGMSTSVSDGGWFGYYHIPAVIYGPGELVQAHSDNESASFDQLLNYTKSIAGFVVDWC QSEK >gi|238617817|gb|GG669604.1| GENE 20 23263 - 23640 296 125 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|160886338|ref|ZP_02067341.1| hypothetical protein BACOVA_04348 [Bacteroides ovatus ATCC 8483] # 1 124 1 123 125 118 47 7e-25 MELKNLDHFVLTVKNINASCDFYHNILGMRVITFNHGRKALRFANMKINLHEVGHEFEPK ALHPTPGSADLCLITTTPLSKVVDELHAKHIQIELGPIAKSGALGPIKSVYFRDPDRNLV EVSTY >gi|238617817|gb|GG669604.1| GENE 21 23735 - 24853 1018 372 aa, chain + ## HITS:1 COG:SP0253 KEGG:ns NR:ns ## COG: SP0253 COG0371 # Protein_GI_number: 15900188 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Streptococcus pneumoniae TIGR4 # 3 359 2 358 362 385 58.0 1e-106 MTQVFASPSTYIQGPGELFNSAQYIKKYGQKVLLLSDQTVLKIVGNQFIDYLKKNDFDVN LATFEGEASESEINRVTELGKQSQDQIIIGLGGGKTADSAKAIADNLDIAAMIAPTIAST DAPCSRLSVIYTDDGQFDHYRFYKKNPEIVLLDTKIIAGAPVHLLISGIADALATNVEAI DVRRANADNMLGAKQTIVAGSIGQACEDNLFEYAELAVAANRAHVATEALNHIVEANTLL SGLGFESGGLAAAHAIHNGFTALSGEIHHLTHGEKVAYGTLVELILNGSDQKRFEKFLKF DLKLGLPTTLARLHLADASDEDLMKVATQACDENDTMKYMPTDITPEDVFAAIKAVDEYS RDFQGRSVMELD >gi|238617817|gb|GG669604.1| GENE 22 24971 - 25180 273 69 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227507862|ref|ZP_03937911.1| ## NR: gi|227507862|ref|ZP_03937911.1| hypothetical protein HMPREF0496_0025 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0025 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 69 1 69 69 110 100.0 2e-23 MRFNKNFYKSYIFWLCVVILAVNLSAALISTPPMYSVNWWIIIVIGVAAVLAIVYLGMHA VDEANHKKM >gi|238617817|gb|GG669604.1| GENE 23 25749 - 27071 1426 440 aa, chain + ## HITS:1 COG:ECs4403 KEGG:ns NR:ns ## COG: ECs4403 COG0477 # Protein_GI_number: 15833657 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 25 434 23 436 440 343 52.0 5e-94 MENTTPTYDSAVKSETLQRDPVKTVILASMIGTAIEFFDFYAYGTAAATYFPNVFFPSLT PTIAMILSLLTFGVAFVARPLGSLLFGHFGDKLGRKRALVVSLLLMGVSTVIIGLLPGYK TLGISAILLLCLARFIQGIGLGGEWSGAVLVATENAPKGKRALYGAFPELGAPIGFFLSN GLFFLLESFLTPAQMNTFGWRIPFLASAVLVIVGLWVRRKMQETPLFRLAQQQNNVQKAP LVEVFRKNWRQVIQGTLTMGVAYTFFFLLSTWSLSYATTSLGFNNKEWLLLLMAAIIVFA LMIVYSSVLADKFGRKKVLITGTISIITFAFVFPFFFQGQHNLLGSLFFLFVGFFTMGIV YGPIGALLPELFPTSTRYSGAGIAYNMSAIVGAAFAPTIASFLVDEWGIHAVGIYLAVMA TISLIALITTKETKSVDYTK >gi|238617817|gb|GG669604.1| GENE 24 27504 - 28964 1127 486 aa, chain - ## HITS:1 COG:lin2646 KEGG:ns NR:ns ## COG: lin2646 COG1502 # Protein_GI_number: 16801708 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Listeria innocua # 16 486 15 482 482 501 50.0 1e-141 MTIDASSIFNAIVVINAIFAVLTVFREKRDIAAIWAWLLVLVFLPLVGFIAYAFLGRKLP KNRLFKLHKHVQMQLDERLNEQRSQLGHDDKTPADDVVRRNRNAVDMFMTTDSAFLARQN KVHIFTNGNELFHRIIEDIESAKKSIHIEFYTFYNDKIGNEIRDLLIQKAKQGVEVRVIY DSWGSMGTTRRFFKPLTEAGGHAYPFLNTRSVLLDFRINFRDHRKIVVIDGIIGYTGGFN IGDQYLGRKKKFGNWRDTHIRIIGSGVFGLQARFILDWNATSPRGQIDEDEVQAKYFPVT TTKGNVNMQIVSSGPDSDLQQIKMGYIKLITMATKYCWIQSPYLIPDDSVLDALRIAAMS GVDVRIMIPSMPDHPFVYRATQYYARQLAEQGVKIYYYGNGFMHAKTMVIDDEIASVGSA NLDYRSFKLNFEINSFIYDEKFATQMRDIYLNDISVSELQTPEMFDKQPLWLKFKQTFSR LLSPIL >gi|238617817|gb|GG669604.1| GENE 25 29098 - 29247 66 49 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227507866|ref|ZP_03937915.1| ## NR: gi|227507866|ref|ZP_03937915.1| hypothetical protein HMPREF0496_0029 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0497_0046 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0497_0046 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0496_0029 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 49 1 49 49 66 100.0 6e-10 MNIFNFFPAALHGFHSVRFIHFIFNEQPMIGIALIVALVLYMIYKIMNR >gi|238617817|gb|GG669604.1| GENE 26 29358 - 29906 360 182 aa, chain + ## HITS:1 COG:lin2947 KEGG:ns NR:ns ## COG: lin2947 COG1309 # Protein_GI_number: 16802006 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 178 1 174 175 98 32.0 8e-21 MEKITQQKIIQTAEHLIMETEKPEVTLSQIATVLGITHAALYKHFKNKQDLWEAVAKDWF DKNILGNIRVNKQAYTNSKELLHDWLWQFATAKKQAYNHDPKMFALNTHYIDNQPLALHD VLWDSYSIIDNFMDYHDPNLERAEAILSAFAVFNLATFSETWNLPNYQQRFEQIWQLIEP GI >gi|238617817|gb|GG669604.1| GENE 27 29967 - 30716 256 249 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 5 242 1 238 242 103 30 3e-20 MVKRLENKVAIVTGGISGIGKAIAKDFLAEGAKVVITGRRETLGTQVAKELGSEEQVRYI KQDVSQEAEWDNVVTTTINQFGHWDILVNNAGIGGSGQLIAQTSLADWQKVININLTGNF LGVRAALNRMESGAIVNVSSVLGIIASMIGTGSYAASKGGTRLLTKAAAVEAIKMGKEIR VNSVHPGLVATDIVTDDVRTALSHSKDPIPTIGEPKDIAKAVTYLASDEAAYTTGTELVV DGGALAGRH >gi|238617817|gb|GG669604.1| GENE 28 30769 - 31611 783 280 aa, chain - ## HITS:1 COG:MT3266 KEGG:ns NR:ns ## COG: MT3266 COG0596 # Protein_GI_number: 15842754 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Mycobacterium tuberculosis CDC1551 # 7 280 32 300 300 312 54.0 5e-85 MVNYQYTKALNLTIQASNGETYAYRELGEKKGVPVVFFVHLAGTLDNWDPRVVDGVAQNH WVIAFDNQGVGFSRGQVPNSIEQMARDSLTFIHALGLKEIDVLSFSMGGMIAQELIAIEP SLVRKLILAGTGPRGGEGIENVTKLSDRDSIRALLTLKDVKTYLFFTRTDNGKKKAKAFL LRLKERQENRDKGISLKAYRTQLKAITAWGLALPADLSQIKQPTLIVNGDEDRMVPTVNS YELNSRIPNSQLIIYPAAGHGGIFQNHEAFVESAVAFLDN >gi|238617817|gb|GG669604.1| GENE 29 31834 - 32547 440 237 aa, chain - ## HITS:1 COG:SA2323 KEGG:ns NR:ns ## COG: SA2323 COG0657 # Protein_GI_number: 15928114 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 6 233 95 321 322 130 33.0 2e-30 MKPAIENSEDQVIFYVHGGGYWGQPTMAHFNAIHRLAKQLGSRVIMPIYPKAPAYEANDA YEMVLKSYLSLLNDKQIDITRITVMGDSAGAGLILALLQRLRDNHLPLPHQAFLLSPWLD ITNSNPKMTEIQPLDPMLDLPNLTLLGQYYAGDLNPKDSLVSPIYGNSAKLPPIYVFTGD HDILNADAMKFQQMADEKDWQVTTFKYHAMNHVFSIFPTPEGRDSLDRMTQIIQSNG >gi|238617817|gb|GG669604.1| GENE 30 32881 - 33882 906 333 aa, chain - ## HITS:1 COG:AGpA656 KEGG:ns NR:ns ## COG: AGpA656 COG0604 # Protein_GI_number: 16119675 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 333 26 357 359 203 34.0 5e-52 MKAAQLKKYAKDYQLDINDIPTPEISKDEVLVKVKVAAVNPLENLIGTGSVKLIQDYAFP LTMGNELTGVIEKVGQNVETFSVGNAIYTRLPLKKIGAFAEYVAVDANAIGLLPTNLDFV TGAAAPLTGLTAYQGLHEELEAKPGQTVFIPGGSGSFGQMAVPIAKDMGLTVIVSGNAEA KERTLASGADQYFDYQTENYWERLKDVDYVIDTLGPDEFDHELSIIKPGGRLLSLRTGPN KRFAVDRNFPWMKQKLFGVAGAKFDKKAAEKDVEYHFIFVRSSGSQLKDLTKIIEENNIV PAVDPTEFHIEDINDALKLVTSGRPKGKVVIMF >gi|238617817|gb|GG669604.1| GENE 31 34057 - 34605 393 182 aa, chain + ## HITS:1 COG:lin2947 KEGG:ns NR:ns ## COG: lin2947 COG1309 # Protein_GI_number: 16802006 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 179 1 175 175 95 30.0 6e-20 MKKITQQKIIETAVLLIGQTQNTEVTLSQIADKLGITHAALYKHFKNKQDLWEAVAKCWF NNQILGKINLKPEDYASLSEFLYAWLWAFANAKKKAYNEDQRMFDLNTQYVDNHPFVLRN VLTEAYKTIDQFMNYHDPNYERAEAILSTFSVFNLPMFSQTWDLPNYQERFETIWDLIKS GI >gi|238617817|gb|GG669604.1| GENE 32 34758 - 36581 1413 607 aa, chain - ## HITS:1 COG:no KEGG:SCAB_77441 NR:ns ## KEGG: SCAB_77441 # Name: not_defined # Def: hypothetical protein # Organism: S.scabiei # Pathway: not_defined # 60 452 59 467 680 196 37.0 2e-48 MFKHRQLASIAKIVFAFGIVLMGSTVSAHAADRPTPVQPTTVYKTTVPASGHLLNNRDYG ARSPRVIQLEHQANSADNGKLLLTFEQVPEAGQTPVFPIYESDDNGAHWNWVSNVHQTKE VGWGMANCPQLYELPQQIGDMPKGTIVIAGDATPNDLSGTQLQLTKSTDVGKTWKYESTI ASGGANFINDDPIWEPYLMVHNNKLVCYYSDERDSSGLKPKAQAIVHQTTTDGTTWSPLV MDVDPNGLKDTDGNDDTRPGMPVVTPIGNGKWAMTYEQKGGASVGLKISSDPESWNSTSA GTTIAWGGAPYITTLNDGRIAFNNNGSDGKVYIFNNAETLQKGIGAADTTYKPKVGQAYN REIMPLANGMLLVVRGEQAITVETIDVGDKAINSSDSGATTPTTPVTPTTPTSSSSSSVQ SSSSSVPAASSSSVSSSSSSTVSSTSSSTTTTAPSTSVIKQVKPFKVAAVKALYRYNNVN FSKANRIKHYAKKSITKAPVFTVVATTKSSNGALRYQLSDGSYITTKAGYVTKLYNQAKI KTLRVINPKGTWEYKSSKLTKKSAVKHLKKSKVVKVKKLVRKGTATRYQLTNGHYVTGNK QFVKVTK >gi|238617817|gb|GG669604.1| GENE 33 36733 - 38058 1293 441 aa, chain - ## HITS:1 COG:CC2315 KEGG:ns NR:ns ## COG: CC2315 COG0477 # Protein_GI_number: 16126554 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Caulobacter vibrioides # 72 435 56 415 418 107 25.0 4e-23 MSKKNESLNADGTWSASVTDAQQPKVPIFIGIATGLGALLWLAPFMGLNSVLNPAKLANI FGGPGSQVNNFLALLGTLGAVTSTITTIIIGALSDRTRTRWGRRTPWIVCGSVLTAAVMV GLGMINDKSQLPIFIVLWCLIQTFINMIVAPLIAVMADMVAPQHRGTISSIYAIGYVIGQ YGGPVIGGRFLSSANPGLVNTGYYALAIMMLISGPIAAIIMHEKSSLGMEKEKLDLSGFV KAFIFPIHHVRNFYLALFGKMMINITVTAFATYQVFILTSGMGLGSTAAGKYVSWMGTAT MITAIVFSSTSGAVSDKLGTRKWPVAFAALLTAVGTILPFFFRDPSAMIWYGIIAGTGSG IFFSVDQALNLEVLPDPETAAKDLGILNFANTGAQILAPVLGAILFDMVGKQYMPILPIL SIIALVGAVLVLMIKETKKAI >gi|238617817|gb|GG669604.1| GENE 34 38075 - 40144 1793 689 aa, chain - ## HITS:1 COG:TM1195 KEGG:ns NR:ns ## COG: TM1195 COG1874 # Protein_GI_number: 15643951 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase # Organism: Thermotoga maritima # 7 686 1 645 649 214 26.0 3e-55 MDFKNFLYGAAYYYEYLPYDRLDEDIKMMKDANINVVRIGESTWSTYEPQEGIFDFSKLD KVVNAMQKAGINVIIGTPTYAIPTWMAKAYPEVLLTDRTGKHQYGSRQIIDITNPTFRNF SERIIRKMVERTVHNPAVIGFQVDNETKHFDTSSENVYLAFEKWLKKKFNGDLDKLNHAY GLDYWSNRINAWEDFPPINSTINGSLGTAFEEFKRTLVTDFLTWQVDIVNEYKRDDQFVT NNFDFEWRKQSFGLNADSNHFEVSKPFDVTAVDVYHPTQDNLTGTEIAFCGDVARSTKDK NYIVMETEAQAFRHWVPYPGQLTLQAFSHIASGANMIGYWHWHSVHNSYETYWKGLLGHD FRPNPVYNEAKTIGKKLKEVGSNFLDTKKKNRVAFVVSNQALSAVDWFPYKNTIFDKTGE HQYNDVLRSYYDPLYRLNVEADILQLGDPRLSNDNYDFLVVPMLYSATDEQLEQLNVFVK NGGNILYSFRSGYTNQDVKARTEVQPALISKAVGAEYELFVEPNRNYGTDKPEKDVTISG TEELSGIDQQPVKYWMELLTTTTGKALATYNHPYWGKYAAITENQYGKGNAFYAGSYLNQ QSITDLYKYILKKIGLWTSRQEQEFPIINKQLITKDNAVLDFYFNYSNQEQTVTYCSKNG QSIMNDLSEKQGDTFTLKPWGLQVFKAEN >gi|238617817|gb|GG669604.1| GENE 35 40333 - 41214 581 293 aa, chain + ## HITS:1 COG:BH0851 KEGG:ns NR:ns ## COG: BH0851 COG2207 # Protein_GI_number: 15613414 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 190 291 12 110 261 68 35.0 1e-11 MDFLKHAKRLPVLDWNLTFFGAHEQKVGPEWVVPIEKHYAFECIFVLEGHEYVKIQDKTY TLSAGDFFLIPPEFPHQVWAGQILKYFCFHFDLDDPNLKVQLIQGISYYHPCNSELCKKI TPHLTKLDSLIKDGSFDFNTKMIIQIELSKMLQSFYQSAMKHTHDASSTHVEYSRIMADY MKSRLTNQVLSYIKNGYAPVEKPVEVDDAIRKVGLSNGYGFRIFKQTYGISPREYLSKLK VNEAKKLLMKPSYSVADIGLALGYSGLANFSRQFKRWTGLSPNQFRVNASQKQ >gi|238617817|gb|GG669604.1| GENE 36 41479 - 42102 427 207 aa, chain + ## HITS:1 COG:no KEGG:LVIS_2019 NR:ns ## KEGG: LVIS_2019 # Name: not_defined # Def: transcriptional regulator # Organism: L.brevis # Pathway: not_defined # 19 187 1 170 188 159 48.0 1e-37 MSKRPMIDKSLRHIRRKILYELLILGVLTSRDMSGYKLRIILESSLVPRREISNGVMYPL LRKLANKGFIEFIEDDHNLRNKKMAHITSAGIERFRQLMNDTVSRDAKRESIFRFKFRAM AGVDSTTQEQILDDFEAAEHSDLKVYQEVHHHLHAKLDDPTANHPYIIWAIRSLDLSLSI CRAKIKWIKNCRQKINEDRKRLNGQTK >gi|238617817|gb|GG669604.1| GENE 37 42086 - 43660 1575 524 aa, chain + ## HITS:1 COG:CAP0109 KEGG:ns NR:ns ## COG: CAP0109 COG0477 # Protein_GI_number: 15004812 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 5 413 2 406 545 204 31.0 4e-52 MDKQSKSKQWIALLAMGLGVFMGLLDVTVVNVALPTMARGFNTTFTNLQWVLNAYTLVYA VTLMIMSKLGDMYGRKKVFLGSLILFVIASAINGMAPSLFILDIGRGIQAIGGAGMMSLS MALVASNFEGKQRGLALGILGSIIGVSSASGPLIGGYLVEHFGWPAIFYVNVPFGIIAVI LTIFYVAETPSYGKNHKIDLVGMILSAIGLFAIIYGLIVKESHPHWSWLDFRVSGLLIGG VIVMVIFVLVELRVEDPMMDIKMFKRPHFLGTIAVAFALGAGIYAYNAFLTALMQNYIGY SAVQTGVRQLTISAWSLILGPVAGILSARYSKKWMIVVSLLIGGLGFFSMAKAISPTVSF VELWPGMVLMGLANGMVNPLLNTAGMEGALPNEMGMVSGLLNVFRQFGTTVGVVGLGLIQ DAQFENYLNANLHHISMPTQALNGIKEALINAGPFSGHSIAFSSRIEKAPFAHALQQVVI KAYDNGMAAVAITSGVIVVLGAIGAAFLMRNRMATQDIELKQPK >gi|238617817|gb|GG669604.1| GENE 38 43856 - 44773 976 305 aa, chain + ## HITS:1 COG:mlr2819 KEGG:ns NR:ns ## COG: mlr2819 COG0604 # Protein_GI_number: 13472500 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Mesorhizobium loti # 1 302 1 306 308 121 29.0 2e-27 MKAFGYDHHGAPDVFQTYDIPTPSPAADQLLIRTIAIGLNNRERAERAGGYGSIGSPVIP GRDVVGEVTIVGGRVSGFSKGDLVLTHTEHGYAEFVLADLDATVKVPDGITPTRAAGMIT PGLTGYKAVKFFGNVKAGQTVIVKGASGGVGSISVQIAADLGANVIGIASSHNEDFVKSI GASQFVAYDQSDPATVLADQGDVVINSAMNGAGTDDDIAMVKPNGTIASVAHESPTTDKP LKFVHIHPTNDMTDREALQAIVDLMRDGKLTVNIGYTLPFSRDGFVKGHQLLEEKHDGRV IIVNE >gi|238617817|gb|GG669604.1| GENE 39 45327 - 46178 586 283 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0017 NR:ns ## KEGG: Lbuc_0017 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 55 256 57 272 297 122 37.0 2e-26 MNKLKLVLILLTTIVSFAIVTAGNAEANQLPANYSFNYHKAQVGAVPYKAKSASQSAYLW NYRHTKRLHNIKNYANSNWYVFYAKAKKYNNKRAVYYYVGASANFKIKGWIWSGYLTRLL AKSPANFNTESTFINYVKTDRSQRLARAILKLFPNTQLKLDLSKAAATSGNWKPTLDPNY TNYINVNDLKPAGSTQVSDDIMWYLSKTAGKPITQRVNHVKRILNENGYPDEKRKSMDHY YIGIASFDGAQDGPESYFTTPYPSVLLDDSQNNSTLIYLATAK >gi|238617817|gb|GG669604.1| GENE 40 46311 - 46616 113 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227510931|ref|ZP_03940980.1| ## NR: gi|227510931|ref|ZP_03940980.1| hypothetical protein HMPREF0497_0053 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0497_0053 [Lactobacillus buchneri ATCC 11577] # 1 101 9 109 109 185 96.0 1e-45 MKLGKVFLSVIILLIICIVSLSTSPRNAVCLRMIHDGHPVMAITCNPYHDKDYSRYLNTT IYSISKKDQYSSASGNFLVGMYRIQHHSFLYTATPQPDIVK >gi|238617817|gb|GG669604.1| GENE 41 46835 - 47026 182 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227507883|ref|ZP_03937932.1| ## NR: gi|227507883|ref|ZP_03937932.1| hypothetical protein HMPREF0496_0046 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0046 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 63 1 63 63 105 100.0 9e-22 MRMHDFLMSKWAWLIPIFIGGFAIVYNDRLAFDFSDILGGIFYLFALVVIIWQGWTAKKS SKK >gi|238617817|gb|GG669604.1| GENE 42 47306 - 47650 79 114 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227507884|ref|ZP_03937933.1| ## NR: gi|227507884|ref|ZP_03937933.1| hypothetical protein HMPREF0496_0047 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0047 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 114 1 114 114 149 100.0 7e-35 MKNPYRFLICFILIFLGCVNGFLGIFGLGPYPLPPLTSIIYYIIGASGVTVIVGSIYLFP VNKIVVRILSSILIICNLVPVIYQIVEDYYFMFPFFMIEILVGIITFFIPTKNL >gi|238617817|gb|GG669604.1| GENE 43 47694 - 48272 330 192 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227507885|ref|ZP_03937934.1| ## NR: gi|227507885|ref|ZP_03937934.1| hypothetical protein HMPREF0496_0048 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0048 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 192 1 192 192 281 100.0 2e-74 MFSQLFAKARRNPFIILWVTLSVIQITMIFLDQPSVQVLPGEQKISVTYLLCGLLSWFAW NIKLIIPTLILSLLPTYLFSGLFLSVIGSGQLTVGVMPLAATIMKVPIQMNDWFPFTIYA LYCVMLAVLQVALLLLVGRLKDTYKYRLQYNHTQSFYINWWLALKEVILSKWKMLVLIYA VLLILKILALSL >gi|238617817|gb|GG669604.1| GENE 44 48390 - 48629 128 79 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2074 NR:ns ## KEGG: Lbuc_2074 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 2 79 24 97 100 65 46.0 6e-10 MILSLFPKDSVRLRIAIDGHPITALKCHPKYFSKSEKYFRKPAYSIQSRYGYPSFDGSYE VYNFKVQKYVVFNFAEHII >gi|238617817|gb|GG669604.1| GENE 45 49058 - 49600 278 180 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227507887|ref|ZP_03937936.1| ## NR: gi|227507887|ref|ZP_03937936.1| hypothetical protein HMPREF0496_0050 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0050 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 180 18 197 197 325 100.0 1e-87 MKGIQRGLLIFGLMLGVSYEIPTTFAATTVNYGVFARSNRDDHINFYFRFNKKLTRVSKK YHEYFGSVAVYDTKIQNNSDYNVRFYFSKLWFANITGYRFYDDVVQRPKKAVVVKAHTTR IVNNSFRDTFDSGYSYYVPQRKKQFVIQYYDDNSYYLAKINHFHYLSKGVGWNPTWKWTK >gi|238617817|gb|GG669604.1| GENE 46 50205 - 50990 728 261 aa, chain - ## HITS:1 COG:lin0310 KEGG:ns NR:ns ## COG: lin0310 COG0388 # Protein_GI_number: 16799387 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Listeria innocua # 5 260 4 259 259 272 49.0 5e-73 MKLTISLAQLDIYFGEPDKNFAQIEPAVKQAAEEHADIVVFPEMWNTGYDLTRFAQIADP DGQRAKTLLAKLAKKYQLIVHGGSVATAHNGAYYNTTYIFGPDGKQLTSYQKVHLFGLMR EDKYLSAGHEEDHFQIKGINATSVICYDIRFPEWLRTLSLDDSRIIFVPAEWPTVRMPQW RRLLAARAIENQSFVVAVNRVGSDPDNDFGGHSGIYNPLGDELLTLNDQSQLKTVTIETN ETDDARGFMPVFADRRPELYR >gi|238617817|gb|GG669604.1| GENE 47 51209 - 52165 853 318 aa, chain + ## HITS:1 COG:L140621 KEGG:ns NR:ns ## COG: L140621 COG4975 # Protein_GI_number: 15674246 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Lactococcus lactis # 5 314 4 292 295 155 37.0 1e-37 MSISILLALIPPITWGATGIIGTKMGGSAAQQTFGESCGALILALGVYLFFVMPNGITVD SRIWLVGLCSGLFWSVGTVGQFFAYKKMGVSAAFPLSTAGQIVCNALMAAAVLGEWTTLN MWFFGIISIALVTVGALLTAARSKAEKKTAKKRPSTYMQGLFALLLSTIGFMLYFVFPNL LVKVGFISERIHNANNGINYMTAIVTPQAVGQVIGSALIGYFILHEKQLLGKPTFKNLVT GINWGIGNLFMFISAANPAIGQATATTLSQLGIVVGTFGGIYILHERKTPDQMVKIVLGS VLVIIGSILITNLKLLSL >gi|238617817|gb|GG669604.1| GENE 48 52699 - 53574 506 291 aa, chain + ## HITS:1 COG:SP1721 KEGG:ns NR:ns ## COG: SP1721 COG1940 # Protein_GI_number: 15901554 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Streptococcus pneumoniae TIGR4 # 2 285 4 290 295 340 56.0 1e-93 MLLGSIEAGGTKFVCAVGNEDFRTIDKTVFPTTTPEETLQKTVAYFKKFNSLNALAISSF GPIEIRRNSPKYGFITNTPKKGWANTDFLGTLKKQFDIPMFWTTDVNGSAYGEYVIASLF NEMLDSLVYYTIGTGVGAGVIIDGKFVGTRGHTEMGHVYLRRHPDDLSFKGICPYHGDCL EGLVSGPTFEARTGKKGQDVPLTDHVWDIMAYYVAQAAIQTTLELRPNRIIFGGGVVSEP FLQKVREQFAKLLNGYVEVGPLNDYIKMPMAKHNGSATIGDFALALREYNK >gi|238617817|gb|GG669604.1| GENE 49 53680 - 54792 1242 370 aa, chain + ## HITS:1 COG:BS_gutB KEGG:ns NR:ns ## COG: BS_gutB COG1063 # Protein_GI_number: 16077682 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Bacillus subtilis # 18 364 6 352 353 370 51.0 1e-102 MDIKERVSLPNITKDNYPDTTRSAVLNKVFDIELKDTPLPPMKPTDVLIKVMAVGICGSD VHYYDTGHIGDFVVKKPLILGHESSGIIVATGDEVTDLKRGDRVAIEPGVPCGHCSYCRE GKYNLCPKMQFMATPPVNGDLSELITYPQDFVFPIPDDMPYEIAALNEPFSVGIHVCQKL DVKPGTTAFISGAGAVGLLAILAFRQFGVDKIIISDSEDLRLKTAKKLGADDVIDIRQED SLKRINQLTNDEGVDYVMDASGNPSAEREDLRTLKRGGKLAYVGVPTTDQVPLDVPFMTD HETQIFGIFRYANTYALGVKILAKHMDELENLLTNYYSLDQTKEALEKTRTDKAGSLKVV IYPNEQLRQN >gi|238617817|gb|GG669604.1| GENE 50 54811 - 55197 260 128 aa, chain + ## HITS:1 COG:BS_ywbC KEGG:ns NR:ns ## COG: BS_ywbC COG0346 # Protein_GI_number: 16080888 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Bacillus subtilis # 9 126 5 125 126 58 35.0 4e-09 MIKDDITGIQHVGIPSKDLDKTIAFYESLGFDQAGLFHNGENRCAFMRFGNLTIETWEGD PVAMKAGAINHISLNTPDVEKAFADAKAQGLNLVDHEIQSIPSFWEKGIRYFNILGPNQE TIEFCQIL >gi|238617817|gb|GG669604.1| GENE 51 55280 - 55411 93 43 aa, chain + ## HITS:1 COG:no KEGG:LPST_C2061 NR:ns ## KEGG: LPST_C2061 # Name: pgi # Def: glucose-6-phosphate isomerase # Organism: L.plantarum_plantarum # Pathway: Glycolysis / Gluconeogenesis [PATH:lps00010]; Pentose phosphate pathway [PATH:lps00030]; Starch and sucrose metabolism [PATH:lps00500]; Amino sugar and nucleotide sugar metabolism [PATH:lps00520]; Metabolic pathways [PATH:lps01100]; Biosynthesis of secondary metabolites [PATH:lps01110]; Microbial metabolism in diverse environments [PATH:lps01120] # 2 40 3 41 450 72 87.0 8e-12 MHISFDSSKLSKFVHDNELGEMQAMVTAADAEVRQGTGAGLAS >gi|238617817|gb|GG669604.1| GENE 52 56417 - 56623 215 68 aa, chain + ## HITS:1 COG:L0012 KEGG:ns NR:ns ## COG: L0012 COG0166 # Protein_GI_number: 15674150 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Lactococcus lactis # 1 68 381 448 448 116 76.0 8e-27 MSVHIPDQTPYTLGYLIYFFEIAVSISGYLNGINPFNQPGVEAYKTNMFALLGKPGYEKL GKELNDRL >gi|238617817|gb|GG669604.1| GENE 53 56639 - 57592 724 317 aa, chain + ## HITS:1 COG:L140621 KEGG:ns NR:ns ## COG: L140621 COG4975 # Protein_GI_number: 15674246 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Lactococcus lactis # 3 313 4 292 295 144 33.0 3e-34 MSILMALIPPLTWGAVGIICTIMGGSAAQQTLGESMGALILGLLVYFFFVMPQSIQVTSH IWQVGFFSGIFWSIGTAGQFIAFKKMGVSAALPISTAGQIISNALMAAAVLGEWITVSMW LFGSISIALITIGALLTSARSHLEKQRKEKRSPTYMQGIVALIISTIGFMLYFVFPNLLV KTGYVSESVHNANHGINYMTAIVTPQACGQVIGSILIGIFIFHEGRQLFAKPAWRNLVTG LDWGIGNLFMFISAASPLIGQAMATTLSQTGVVIGTFGGIYLLHEHKTSDQMIRIIIGSI LVIAGSILISNLKILTI >gi|238617817|gb|GG669604.1| GENE 54 57659 - 58657 709 332 aa, chain - ## HITS:1 COG:BH3241 KEGG:ns NR:ns ## COG: BH3241 COG1609 # Protein_GI_number: 15615803 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 332 1 332 333 138 28.0 2e-32 MRAKIADIAKIAGLSSASVSRILNGRGRYSEETAKRVKKIANEIGYYKNRSASDLASQRN NTIGVINYIAETGANDQVIKGILEEADRNNIDVIMMMSKRDDQTAIAKTVQSMIERRVLG VIFLSVRPDQEIIDRLRYANIYPQEVASASDNRISYISSNDFQIGYQATKFLLDQGYQRI GFVGANISEDYIGVNRYKGYLEALKEKRIKTDPGWVFEGDGKYSYQSGLDAAKYYENMKG VDAVLATSDDAALGLSNGLYDLQRKVPDNIAVIGIDGTAVCLRTRPQITSVTQNFHLMGQ MAVDEVINPARQIDDIQKIQIPFTIDVRETTK >gi|238617817|gb|GG669604.1| GENE 55 58805 - 59131 286 108 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2202 NR:ns ## KEGG: Lbuc_2202 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 108 1 103 103 117 55.0 2e-25 MQSQLRPTQGQFRNQVQDALHKKRIDEIKLIGDFATIANFIMYVSYIGEIISNLNGNPIS PIQPLFAALNATLWVSYGWLKPKKDWRLIIASFPGVVFGVLAALTAMV >gi|238617817|gb|GG669604.1| GENE 56 59934 - 60959 987 341 aa, chain + ## HITS:1 COG:CAC3161 KEGG:ns NR:ns ## COG: CAC3161 COG0547 # Protein_GI_number: 15896409 # Func_class: E Amino acid transport and metabolism # Function: Anthranilate phosphoribosyltransferase # Organism: Clostridium acetobutylicum # 1 330 1 331 331 300 47.0 3e-81 MIKQAIEKVVNHENLTFEESQAVLDEIMNGEASEVQTASLLTALTAKNPTIDEIAGAAAS MRSHALAFPETKDVLEIVGTGGDHSNTFNISTTSAIVVAATGTKVAKHGNRAASSKSGAA DVLEALGLDINETPAVSYESLQENNLAFLFAQEYHKSMKYVAPVRKQLGFRTIFNILGPL ANPAHPTRQLLGVYDESLLEPLANVLKKLGVKNAMVIHGRDGLDEMTTADETAVVELRDG HLTKYTLTPEQFGLKRSQRADLVGGTPEDNGQITRNILAGKKGPQRDIVLLNAGSALHLA HPELSIQEGIDLAAKTIDDGKALEELNRLLAFSNKRKDVVA >gi|238617817|gb|GG669604.1| GENE 57 60956 - 61735 606 259 aa, chain + ## HITS:1 COG:XF0213 KEGG:ns NR:ns ## COG: XF0213 COG0134 # Protein_GI_number: 15836818 # Func_class: E Amino acid transport and metabolism # Function: Indole-3-glycerol phosphate synthase # Organism: Xylella fastidiosa 9a5c # 52 248 56 252 264 185 50.0 1e-46 MILDDLVAVTKTRLARHQRQQSFTDLKQVVAEMPANPKPDFLTILEQPGLHVISEVKKAS PSKGTIVSDFPYLEIAKSYDQAGADAISVLTEPDYFNGHLHYLKEISQTVSALTLRKDFT IDPYMIYEAKANGASIILLIVAILDDQQLRDYRRLAESLGMQAIVEAYTADEVTRALRSD AKIIGINNRNLKDFKVDFNNSLKLRDMVPENIPVVAESGIKTQEDVKELAGAGFNAILMG ETLMRSNKKKQLIEAFKEA >gi|238617817|gb|GG669604.1| GENE 58 61739 - 62326 509 195 aa, chain + ## HITS:1 COG:SP1813 KEGG:ns NR:ns ## COG: SP1813 COG0135 # Protein_GI_number: 15901642 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylanthranilate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 1 193 1 195 199 123 42.0 2e-28 MVQVKICGLMKPDDILAVNAAEADFAGFVFAPSRHQVSLARALTLKKLLNPKIKTVGVFV NESMDEILAIYKAGVIDIAQLHGKSTPGDITRLQRAGLKVIQVFERQSIDLASTADYLMV DSGKGSGQLLDLKAIPHINRPLILAGGLTPQNVRQAVQLVQPDIVDVSSGVESDGHKDAD KIIQFIKNAKEEVLL >gi|238617817|gb|GG669604.1| GENE 59 62323 - 63543 1355 406 aa, chain + ## HITS:1 COG:CAC3158 KEGG:ns NR:ns ## COG: CAC3158 COG0133 # Protein_GI_number: 15896406 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase beta chain # Organism: Clostridium acetobutylicum # 15 398 3 385 394 465 58.0 1e-131 MKTLNEEKQQKKRVGRYGKDYGGQYIPETLMTELEKVTKVFNDLKDDPAFKAELNDLLVN YANRPSLLYYAKNMTEDLGGAKIYLKREDLNHTGAHKINNVIGQALLAKHLGKKRLIAET GAGQHGVATATIAALMGMDCEIFMGKEDTDRQKLNVYRMELLGAKVHPVTSGSMVLKDAV NATLQEWASRSEDTFYVMGSAVGPAPFPAIVKHFQSVISKESKQQLQAKEGQLPDMVVAC VGGGSNAIGSFADYIDDPSVKLVGVEAAGKGVDTDRTAATIERGTVGIFHGMKSLFMQND DGQIDPVYSISAGLDYPGVGPEHAALAQEGRAQYVGITDDEAVQAFEYIAKQEGIVAAIE SCHAVAYVEKIAPKMSKDQIIVCTLSGRGDKDVASIAKYKGVDIDE >gi|238617817|gb|GG669604.1| GENE 60 63536 - 64330 423 264 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc [Roseobacter sp. AzwK-3b] # 12 235 17 242 263 167 38 1e-39 MSNLSDVFKNHKAFIPFVVADDPDFATTVKNVVALANGGADIVELGIPFSDPVADGPVIQ AADLRAFDAKVRTKTVFEIVEAARKETNVPMVFLTYLNIVFKYGYEAFLKRCADLNVSGL VIPDLPYESRDEIVPIAEKYGVDIIPLITPTSGHRIEKIAKSASGFIYVVSSMGITGERN EFFNGLKDLVTEIKKYTDVPTAIGFGVHTPEQAQAMAGIADGVIIGSAIVDIVAKEKQNA PTAIEKFTKQIREAVDSKKQVPVK >gi|238617817|gb|GG669604.1| GENE 61 64461 - 66341 1408 626 aa, chain - ## HITS:1 COG:CAC0625 KEGG:ns NR:ns ## COG: CAC0625 COG4934 # Protein_GI_number: 15893913 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted protease # Organism: Clostridium acetobutylicum # 34 619 57 623 625 273 31.0 7e-73 MRGKQILIGALSALLVLTTSGTAGAKGKAKKSDNHVMTASVVFKPTSETNLTNDVYDTVN PSSSSYHQYLTPSQFAEKFGQSTAYVNSVKTYLNKYHLTTSTFAGNLAIKVKGHRSDLNK AFKARYVKGKPSRTTYHLPGKLSKNVVAVIGLYAKKADGKVASKKSAKISNAAVPTSGEK PQTDISGNQFSKQYGAAKFADHYQLSSLYDKGLTGQNQRIGIVSYGDFRKSDLQTYWRQA GVADHLNQIHKIYTIDNAKTVTKDMNHSLSEAQIEATLDVQSASAIAPGADIDFYIGSSV NQATNDSAVYFTTFAQAISDNQDQQISTSFAPTVELPGQWDDHSSTLRQYNHAFNLLLEQ AAAQGITVFRASGDNGPWDMPGKVENHSVTTSPYQVIVGGTTLPYQKIINHRVVSVKQER AWGDTYSAVPSKNQPANFPGGGGGFSALNPTPRYQQGFSGINTFRAIELLKYKKGGYLIN KHPRVIYGTGHSRNLPDVSSNADIQTGYATYLSGPKVISNSKKKIKTAQTKIWMIGGGTS YAAPQVAAANAVMGSGLQTRIGFWNPQIYKFAAQQDTPFNVLDDADQNNNLYYTGQPGKL YNQATGLGTINYEKLYGHFQDEKTTD >gi|238617817|gb|GG669604.1| GENE 62 66535 - 67140 299 201 aa, chain - ## HITS:1 COG:no KEGG:LVIS_2059 NR:ns ## KEGG: LVIS_2059 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 6 187 4 187 195 89 27.0 7e-17 MIYSSIVSLLIIIYFVKDQFEFSKVTKMRLLFLPIFCLYQFFSKLNINSVHDIVMLIVIL IFSIVVGFYQSVNFKIKELSTSKYFFIDDNGKEVNIYQKALYARGGRSYLIGWLLVFLFT LLLNSKFNSDLNFFKFTHELVDEMMKDLAIFMRIRDTNSGWKSWGILGITNIVYLFFIRH KSTKMNQFFKSNTMETIGSKK >gi|238617817|gb|GG669604.1| GENE 63 67103 - 67294 118 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMINKETIEEYIIKIPPTFKMLIQSFIKKNIGIKLFSNRFYTLFKMLVSKVTVPYLLFKH MLG >gi|238617817|gb|GG669604.1| GENE 64 67229 - 68821 1326 530 aa, chain - ## HITS:1 COG:SP1529 KEGG:ns NR:ns ## COG: SP1529 COG2244 # Protein_GI_number: 15901374 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Streptococcus pneumoniae TIGR4 # 1 517 2 516 529 216 32.0 7e-56 MSGSFWLSFGSIFSRVLGVIYLIPWLAMMGSAAHQNAAQALFNTSYTPYALFISLGTAGF PSAIARRVAYYNGENKFLNSKRLAKVGFGLMLVSGVVCGILLYILAPLLSANSPVVSPQI STTAIRFLVPAIVILPSMSAVRGWFQGNQDLKPYGVSQLWEQFIRVVFMLAATYVVIFIF HKSFIHAVYLSVMAALVGALASYLYLALYYKKQNADYIERAKQSKPYDLQGLGRTFKMIA YESIPFVVVGSGISLTQLVDQLVFKQVMENVLHKTALYTQNIFTMFSANPTKITTVVVSL ALAVAETTLPILASSRAAGKKDIGDLVLQNLNMLIFTLVPIVTILSALSFEINGVFFPFS FLGGKYLFWNIIQSLILGLAINSLTLLQALHYSKKAMFYLIGGLIVKLVLQIPLVTWLQG FGAILATAISFGLVCVLSIREVRKEFNVKLSKLTLNVIVNACFAIVVGLAATGMNQVYLP VTKISAFIYAAIFGLVALLIYLALANATGLSKHVFEKKIGYRYFRYKHFE >gi|238617817|gb|GG669604.1| GENE 65 68929 - 69501 425 190 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|118587160|ref|ZP_01544589.1| ribosomal protein acetylating enzyme [Oenococcus oeni ATCC BAA-1163] # 1 177 16 192 202 168 43 7e-40 MFVFNHFNVDDHRISLLLPERDQAHALFQVVEADRDELRKWMPWTDDTKSERAEAKFIKY IQGRMVEGKVFMLTIAMDGVPVGMIDFHNIDHADRHAEVGYWLSSRVQGRGIMTRALKLM IDHGFKSMGLHKILIQVDSGNHKSDAIPKRLGFSKEAVFKEQIYFHGEYRDFVEFGLINH ANRDDSKIGK >gi|238617817|gb|GG669604.1| GENE 66 69634 - 70962 1279 442 aa, chain - ## HITS:1 COG:ECs4403 KEGG:ns NR:ns ## COG: ECs4403 COG0477 # Protein_GI_number: 15833657 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 436 1 436 440 343 51.0 3e-94 MEDTSTTAVDSTQESTVTLQRDPVRTVILASMIGTAIEFFDFYAYGTAAATYFPKVFFPK VTPAIALILSLLTFGVAFIARPLGSLVFGHFGDKLGRKKTLVVSLLTMGTATVVIGVLPS YATLGILSVLLLCLARFIQGIGLGGEWSGAVLVATENAPANKRALYGAFPELGAPIGFFL SNGLYFVLESTLKPAQMQAFGWRIPFLASAVLVIVGLVVREKMQETPLFRLAMDKSKVQK SPLAQVFKHNWAEILKGTFIMGVAYTFFYLLTTWSLSYVTTAMSFNNREWLLLLMLGVVL FGVMIVVASLFADRIGRKKVLVTGTVMIIAFALIFPFFFQGQHNLAGGLFFIFVGFFIYG IIYGPVGALLPELFPTSTRYSGSGIAYNLAAIIGAAFAPTIAAFLVDKWGIHSVGFYLAL MACVSLIALLTTKETKSIDYTK >gi|238617817|gb|GG669604.1| GENE 67 71412 - 71672 252 86 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2215 NR:ns ## KEGG: Lbuc_2215 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 2 86 3 87 87 110 70.0 2e-23 MKISVQGNLQTKPLVGSYAEVEKRIIADLDKLQVKDGKKPLSKISEEVVIEPYRDGSYPY HAMLSEAAKIFDLSPEIQKYATMSTD >gi|238617817|gb|GG669604.1| GENE 68 71820 - 73043 1051 407 aa, chain - ## HITS:1 COG:SP1716 KEGG:ns NR:ns ## COG: SP1716 COG1668 # Protein_GI_number: 15901550 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 406 1 399 399 273 37.0 4e-73 MNKTWIVALETYLRQVKSWSFVILVVSPFLMLAVSLGVGYMSATSGSNTDKIAVISNNPA LRKQFISTNKDDISQKVTTTNTAKRKVADDKLAGYLQLSVTNQQVSARYYSKESMDSSLK LSVENFLNKNQQALNVQNAKLSSGQMKSLSQQPIFKQHIKQSSSSNDIVKIASFWILVFV IYMVLITYSSVTAQEIASEKGTKIMEIIFSSTKASKYFIGKITGVMMVILTQILVYIIGG YVFYEILRRISTFRKVFDQYQSLIKPIIGNLLNVNLVYLFLGVIIYTIVSAFSGALVAKP EDAPKAAQPAIYLGMLAFFLTFPFQSNATGLVVKILSYVPFFSSYFMPLRIINNEAGALE ISLSLLVLVLTIVLFAWYISRIYEGLILQTDDSSFWKRLKRGLSYQS >gi|238617817|gb|GG669604.1| GENE 69 73036 - 73932 595 298 aa, chain - ## HITS:1 COG:SP1717 KEGG:ns NR:ns ## COG: SP1717 COG4152 # Protein_GI_number: 15901551 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 1 293 1 293 297 313 51.0 2e-85 MLDIENITKQFGTVKALNDVSFTVPDGQITGLIGQNGAGKSTTFHSILNFLKYGGKITWD GEPVTEADFDNIGYLPEERSLMPKLTIEQQIIYLARLKDKPAKVIRPQIDDWMDKFAVKG KKTDKIKSLSKGNQQKVQLICTLIHHPKLIILDEPFSGLDPVNSDLLKKAILEARDQGAA IIFSSHDMANVESICDRLVMLKTGSVVLNGTIGEVRDSFGKSEVYVTTDWSSDQLDQLPH VVKVTHIRDQRYLLRLDDPSTGPEVFDKLTGGHYIQEFSQQPPTLDEIFRMKAVTTHE >gi|238617817|gb|GG669604.1| GENE 70 74474 - 74959 187 161 aa, chain - ## HITS:1 COG:L125244 KEGG:ns NR:ns ## COG: L125244 COG1335 # Protein_GI_number: 15674036 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Lactococcus lactis # 4 157 17 173 176 102 36.0 2e-22 MVKDVLLVIDVQNGLQEAVGFNELIDRINQRIDAYLHTQRPVIFIQNVDSELPYGSDDWQ LVKALHHQSSDRVMLKYHSDSFFETGLADLLHHRKLSSVEVCGLQTEYCIDTVIRVGHDL GFKMAITHHLHTTFDGSLSAEQISRHHESIWNGSFAEVTNW >gi|238617817|gb|GG669604.1| GENE 71 74982 - 75233 296 83 aa, chain - ## HITS:1 COG:no KEGG:Cphy_1340 NR:ns ## KEGG: Cphy_1340 # Name: not_defined # Def: hypothetical protein # Organism: C.phytofermentans # Pathway: not_defined # 1 83 1 83 83 121 69.0 9e-27 MIEYKYDVQCLIDGHDLDEDAIDAYIKGHFEGDSLIAVGDDTLIKIHFHTNKPWEILEYC ASLGEIFDIVVEDMDRQARGLKG >gi|238617817|gb|GG669604.1| GENE 72 75371 - 75736 185 121 aa, chain - ## HITS:1 COG:BS_yybR KEGG:ns NR:ns ## COG: BS_yybR COG1733 # Protein_GI_number: 16081106 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 2 102 4 104 125 128 55.0 2e-30 MKRKIYDCQEGCPVESTLQIIAGKWKSVIVYHLLDGTKRFSDLQKLMSTCSRRMLALQLK ELLADGVVSKEVYPTVPVKTTYSLTEFGRTLKPVVSAMEQWGMMYNQLKSSEVKNTQISE S >gi|238617817|gb|GG669604.1| GENE 73 75913 - 76935 967 340 aa, chain + ## HITS:1 COG:BH0738 KEGG:ns NR:ns ## COG: BH0738 COG0604 # Protein_GI_number: 15613301 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Bacillus halodurans # 1 338 1 338 339 353 50.0 2e-97 MKAIGFTKPLPISDPKSLETFELDRPSPKGRDLLVQIISTSVNPVDVQVRGNGHHTLKKP KVIGWDAYGQVVEVGSDVSIFNIGDKVFYAGSFIRSGSDSEYQLVDERLVGHAPKKLTAA QIGGMPLTSLTAWEVLFERLQINPDQPEKNADKTILIINGSGGVGSIATQLAHMAGLRVI ASASRPETINWVKKNGADKTVNHRLNLVSEVRKLGFHYVDYILNLNDLDGHWGEIAELIK PGGKVGAITENKHGIDLQKLTKKCASFHWEWMYSKSYYHTDDMVTQHQILDRVATLLDNG VIHSTVTKTLTPINVDNLKRAHQEVETNHMIGKIAISNES >gi|238617817|gb|GG669604.1| GENE 74 76988 - 77386 216 132 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227507915|ref|ZP_03937964.1| ## NR: gi|227507915|ref|ZP_03937964.1| hypothetical protein HMPREF0496_0078 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0078 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 132 18 149 149 259 100.0 3e-68 MLTVAFGVQANAQAGPKVVQSHTMPSSFIGSWHLYDQDHHQFENMKITANSVQQGEHKVF GKNLIMQRIKLEDHYQYSFFDKRVKDGCFGLYHPARVLVNGHYYRSILLDRQMAYLPFKT KRHVVIPKVYRY >gi|238617817|gb|GG669604.1| GENE 75 77421 - 77690 107 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227507916|ref|ZP_03937965.1| ## NR: gi|227507916|ref|ZP_03937965.1| hypothetical protein HMPREF0496_0079 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0079 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 89 1 89 89 155 100.0 7e-37 MGLVLYWLFKDKSGWHRQNGVKRLFGWTFFAFFILLFGVPLLFVSVAKLVLYIVLLAVCS VGYGQWAQRYFDHKVKTDQKEIFGSEKHF >gi|238617817|gb|GG669604.1| GENE 76 77839 - 79410 1224 523 aa, chain - ## HITS:1 COG:no KEGG:lp_1649 NR:ns ## KEGG: lp_1649 # Name: not_defined # Def: ABC transporter, permease protein # Organism: L.plantarum # Pathway: not_defined # 1 520 2 532 532 222 30.0 4e-56 MINRQLMQLIKINILYVNPQQTRKQRENGKTGAALYRSLIYQYLLLGALFAFIYGALLLT TNLVKDIGEFTNIVGLFTIIGLSQSVTTIDNVFFESKDLKDYLPLPLSQWAVFAAKFSVV GLTILPTALPVWMMFVITGIQTGRFIGIGFTVGTLLFILYYIFLFLFCSIAIFSFAQTGI YRHHQKLMTFLMTGITMVAMAVAVFVMNMANNDNSTSLKAIPGFAQLHQIVVDPTSLVSL VTIAVLLISVFVMGVLLQKWLLPKVMSGANVQARTVKRKHRQGQGMARQFIRYNLGLLGN PTLLTQSISITIFPVVIYSIAMFVQNGFSLANLTAKYAGVMFVAGIMVAIITVNQGSLSS VMISLDRQNLAFIKSLPIDFKGYLWLKFKLIVIVQSLVLICLAIGFGFFAKLLWLNVLTL CLGVVLGNILSSMYNYTRDWRLLDLTWTNATQLFNRGGGNMLIGFVILGTMIVGAMVVGL YAAMLNAFPPVIINVSAMMIVIIATTYVVWHYMDYWKRADLTL >gi|238617817|gb|GG669604.1| GENE 77 79403 - 80170 280 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 2 220 12 231 312 112 30 5e-23 MIEFNHLRKVYPSTEALKDLSLTIPSGKIFGFLGHNGAGKSTALKSLVSIIEPTSGTISV DGYNLAEHRLSIKKKIGYVPDSPDMFLELTANDYWDLIASAYEIPKDTREQRQTELARLF DMDSHADEAIGDFSHGMRQKTIVIGALLPDPDIWVLDEPMTGLDPQAIYDLKTLMRSHAA KGKTVVFSTHVLATAQELCDELAILRHGQLIYNGSVNQLLSTMPNATLETIYLKMAGRQG DNEMINQLEGEDKHD >gi|238617817|gb|GG669604.1| GENE 78 80642 - 81205 436 187 aa, chain + ## HITS:1 COG:L10283 KEGG:ns NR:ns ## COG: L10283 COG1396 # Protein_GI_number: 15671987 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 7 175 2 183 185 75 26.0 5e-14 MHDAETIGKRIKKIRIKNQLTQNQLAEKLFVTQQTVARWENDKHQPPITAVQDLAKLFDV DVSYFFGEDLIIVRKFNFFALLGSLVFNFLFFWIVALVVITLFITIWGTTAGSLLSPIII LFQAYQGIRAFTWIRFASTILMAVVALILIPLLWMITKYLWKILRAYYRYNISSIIYEVT PQPHHKG >gi|238617817|gb|GG669604.1| GENE 79 81407 - 82057 308 217 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 5 204 3 201 223 123 34 3e-26 MQNNKVIVGNNISKTFKKGKNITTVLKKVNLTANRGEFLSIVGPSGSGKSTLLQCISGML KPTSGEIELLGNKIYNLSNTKMAKLRRTTIGYIFQNYNLVPYLSAFENIVLPLRLSGIKW NATKINNLLKEMRFTASPNSKVEDLSGGEQQKIAIARSFIKNDEIIFADEPTGALDTLSR RFIFDTLKKMAGTGKCVIMVTHDIEMASQTDRSLVLI >gi|238617817|gb|GG669604.1| GENE 80 84278 - 85657 172 459 aa, chain + ## HITS:1 COG:no KEGG:SZO_05090 NR:ns ## KEGG: SZO_05090 # Name: not_defined # Def: permease # Organism: S.equi_zooepidemicus # Pathway: not_defined # 1 413 1 402 450 124 26.0 1e-26 MIKVIVAQFKNSYKQWGGVLALLSISAVMIGFCFNGSVSVFSLSKQTFLNAHNPLPIFIL PLVFGGITLIIISSGVIKLAIVSLQKEYVLWSLLGTSPLQLTLLIGGQLFLIGSVSGIIG YILSLPLGNFLYSILQKIVGKSWLPSIPMNPSLIAIFITILLTAMLAFVCGFIHANSIFK EVGILRGKEKHSHDIGFIVKVLIIVGCLFLLFKNYTALSFASKGIQAIIAKGQVLHAASF YVANLLSIALLLMILFGLTAKEILPFLIHALFITPFGHKVTGPKIAGRMLIYQKHYLGSL IVPFIITSILLTDTLFMTLGIPGNNGAQNSSGTLVTFIVYVAAPLIIVLANIFSMMLMVT NKEQQINHQLRILGTNTTQLVATVFYKAFICGIVTVIWGALFNSILYLALYKISLLVRSP AKLNIWSILYFPVASSILSFSFILMIGCYSITKSHHLRE >gi|238617817|gb|GG669604.1| GENE 81 85680 - 85889 91 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227507924|ref|ZP_03937973.1| ## NR: gi|227507924|ref|ZP_03937973.1| hypothetical protein HMPREF0496_0087 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0087 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 69 1 69 69 133 100.0 5e-30 MYRGVGTVISARSKDWFQSPSSHERFTQYDHLLADNLIFDYFDFYHNSRCRPDNQSTVIE QYVLTPILY >gi|238617817|gb|GG669604.1| GENE 82 86096 - 86944 556 282 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0017 NR:ns ## KEGG: Lbuc_0017 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 54 252 57 275 297 85 30.0 2e-15 MLKKSLSFLLLLGAIFLGLLSVGSVSANTIPSNYSFDGSKFTGPIPYYSSTKSQKAYIWN NTQTKRIHNLKNYPNTVWLVSKAFVKPVKGKNEVYYKLYSAYNKKVKGIAWYGYFKKSII KLPVLFNSQQAYLNDLNSNKALKLTRLVAKLFPNSKINLNLSKSLYVSLPQKTYLLNEFT STKAIDLNSFNSEGNYTYYERMAPSKAVKLIDQRLTELGYDQDKRNSMSNYDIGLDIVGY ADSYDDQRGFNLANQYRYPVTLPDFRDMRDYGACSIQLGIPK >gi|238617817|gb|GG669604.1| GENE 83 87110 - 87832 735 240 aa, chain - ## HITS:1 COG:SP0828 KEGG:ns NR:ns ## COG: SP0828 COG0120 # Protein_GI_number: 15900715 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 12 235 4 226 227 216 50.0 2e-56 MSTINSELQNKLKKAAAVKAADYVKDGMIVGLGSGSTVTMLVDELGRRVQEKGLKFTGVS TSISTAKQAESLGIKIVDLDSIDAIDLTIDGADQVDSDFNGIKGGGGNLLWEKIVAANSK KLIWIVDKSKVVDRIGAFPLAVDVEPFGSHHVLKKFSDAGFNPVVRTDKDGKVFKTDSNN IILDLHLHEINNPDKLADTLINTVGVVEHGLFLNAVNEVVVGKEGAPQILINPKADPSYK >gi|238617817|gb|GG669604.1| GENE 84 88202 - 88336 91 44 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227523160|ref|ZP_03953209.1| ## NR: gi|227523160|ref|ZP_03953209.1| peptide ABC superfamily ATP binding cassette transporter, binding protein [Lactobacillus hilgardii ATCC 8290] peptide ABC superfamily ATP binding cassette transporter, binding protein [Lactobacillus hilgardii ATCC 8290] # 1 44 555 602 602 78 91.0 2e-13 MNDQAAYAPEEFNLSWTPVKGYSVTTEGTNEFWSNLSLTATNPK >gi|238617817|gb|GG669604.1| GENE 85 88972 - 89175 254 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227507929|ref|ZP_03937978.1| ## NR: gi|227507929|ref|ZP_03937978.1| hypothetical protein HMPREF0496_0092 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0092 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 67 1 67 67 116 100.0 6e-25 MDKWRLNHKFYKTIDFWLGLFFVITDVKGIVPQGNVSFGFFLDLGGLIIGIVLILSALLK KVPGDSK >gi|238617817|gb|GG669604.1| GENE 86 89348 - 89584 203 78 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163756262|ref|ZP_02163377.1| 50S ribosomal protein L20 [Kordia algicida OT-1] # 2 66 3 67 67 82 61 4e-14 MIKITLNVVMAQRNISTGELAKMVGITPTNISILKTGKAKAIRFSTLEKICKALKCQPGD ILEYVDEGSESSTNLSDF >gi|238617817|gb|GG669604.1| GENE 87 89610 - 90062 343 150 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0125 NR:ns ## KEGG: Lbuc_0125 # Name: not_defined # Def: integral membrane protein # Organism: L.buchneri # Pathway: not_defined # 5 150 47 192 192 129 43.0 3e-29 MASDILKSDDFLLVPNHSHISQALINQFPEYIYAILMSIGVILATISILYELRALIKIIS NLGQKKYFTAENVKLVRLFIVSQIYTLACDPFLAGANQLSTSYLGRVNNGAFNATWSNIP DDLITLIIIGVIYILFKLAEQMKRESDLTV >gi|238617817|gb|GG669604.1| GENE 88 90458 - 90988 244 176 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1756 NR:ns ## KEGG: Lbuc_1756 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 173 1 173 177 99 28.0 8e-20 MKQKESLWQKIIRRFYGMDSPLNDYQRKQINRIGNNAFLILFGYILTSNVVVAFLTVTRQ SEVLVDFIFVNILFILLLIIGYIFPAMNRLHLYDKEVSSGNYTQILKGIRWRSARAGIWF CIYMWFVNRGLDWFFDGISFTQGLQSFHGYWRAILGGVIFGFGMYMFKRINSKKRI >gi|238617817|gb|GG669604.1| GENE 89 91028 - 91231 280 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227507934|ref|ZP_03937983.1| ## NR: gi|227507934|ref|ZP_03937983.1| hypothetical protein HMPREF0496_0097 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0097 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 67 1 67 67 87 100.0 3e-16 MFKKEVDVNADRFDTKINEIIDTSQNVDVLVDHKTKVQYLIVSQRGIGGGVGVTVLVDKD GKPLLAE >gi|238617817|gb|GG669604.1| GENE 90 91562 - 92200 189 212 aa, chain + ## HITS:1 COG:SPy1834 KEGG:ns NR:ns ## COG: SPy1834 COG1396 # Protein_GI_number: 15675661 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 6 142 1 133 195 71 36.0 9e-13 MEGVPMSISEKIKQCRKQKNLTQKDLADELHLSRKTISGWENGRGYPDIKSITQLSDIFG ISVDDLLRDDNLLEHYADQDKRSLLANKIAQITYYLILALTIVSYGTIFNLWYINNTIIL LILVVLISILFSKYSNWESFKKHKKLLRSVLSSIFFLFLNTIIIPSNISFFKLIKVPDHA EKLGIITGMFLVTIILSICLTIILFLHPQNKK >gi|238617817|gb|GG669604.1| GENE 91 92367 - 93020 718 217 aa, chain - ## HITS:1 COG:lin0787 KEGG:ns NR:ns ## COG: lin0787 COG2910 # Protein_GI_number: 16799861 # Func_class: R General function prediction only # Function: Putative NADH-flavin reductase # Organism: Listeria innocua # 3 217 1 213 213 129 39.0 6e-30 MALSIGVIGATGMAGSAITKEALKQGLNVKAFVRNESKARDMFGDQATYSVIDVFDIQKP DIADLDVVVDAFSPGHDPSKAQQHIELAEHLVDLVKGQDKPRLFFILGAASLYIGSGHRL IERLEGLPNKEQFIATPRAQSKEYEFLSNVKDVNWVAISPSSNFVPGGLADYELGHNDLL RNDAGKSEVTSGTVGKAIVDEIVNPTHRNERFTVVNK >gi|238617817|gb|GG669604.1| GENE 92 93188 - 95446 2063 752 aa, chain - ## HITS:1 COG:lin2226 KEGG:ns NR:ns ## COG: lin2226 COG1554 # Protein_GI_number: 16801291 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Listeria innocua # 2 746 4 741 753 885 57.0 0 MKRIFDVQPWHIVTNEFNPDNKRLQESMTSLGNGYMGMRGFFEEDYSGDSLAGLYLGGVW YPDKTRVGWWKNGYPDYFGKVVNAVNFIKMNVKINGDKIDLAKDQFSDFKLDLDMQHSIL TRSFTVTKGDAKVAVTFERFLSVAQQELSVQRLTLKNVGTTKATVTVDSAIDADVKNEDA NYDERFWNVVSTEQKPDSGNVIAQTTPNPFGTPQFTSAMEMRHVSDLKTVSVAQPNDKEV VNEFTGELAPDQSAKLEKRVIVTTSRDYQTNDDLIAAMHQLSDRVAEKTYEDLFDAHAKI WEERWNKSDIEIDGDTAAQQGIRFNMFELFSTYYGEDARLNIGPKGFTGEKYGGATYWDT EAFAVPVYLGITDPKVTRNLLMYRYKQLDGAYHNAKQQGLKGALFPMVTFDGIECHNEWE ITFEEIHRNGDIAFAIYNYTRYTGDESYVLNEGSKVLTEISKFWADRVHFSQRKQQYMIH GVTGPDEYENNVDNNWYTNILAQWTLKYTLEILKKVSPEQAEKLAVTDEEKKHWQDIVDR MYLPYDKKLNIFVQHDGFLDKDIQPVSAIPADQLPINQHWSWDKILRSPYIKQGDVLQGI WDFIDDYTPEQKKANYDFYEPLTVHESSLSAAIHSVLAADLHYEDKAVELYERTARLDLD NYNNDTDDGLHVTAMTGGWIAVVQGFAGMRVRDGQLHYAPFLPKKWHRYSFRQVFRGRLI EVNVDQKGAQFKLIEGDPITIDVAGKALKLTK >gi|238617817|gb|GG669604.1| GENE 93 95467 - 96825 1331 452 aa, chain - ## HITS:1 COG:NMB0388 KEGG:ns NR:ns ## COG: NMB0388 COG0477 # Protein_GI_number: 15676302 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Neisseria meningitidis MC58 # 10 450 8 448 451 609 73.0 1e-174 MEERSAEAATKKSGLPKLPASTIWMINFGFLGVQMAFTLQSSQMSRIFQTIGADPNKLGW FFILPPLAGLIVQPIIGYYSDRTWAPRLGGRRLPYLALGTLIAIIVMCLLPNSGSFGFGY ASITALLFGAVTVALLDVSSNIAMQPFKMMVGDMVNDDQKSYAYGIQSFLSNGGAVIAAI FPFLFTAFGIANTAKKGVVPQSVVISFYVGAVILLLTSLLTIFKVHEYDPKTYAKYHGIS EEANTTGGNWFALLKKAPKVFWTVTLVQFFCWVAFQYLWTYAAGAIAHNVWNTTNAASTG YQAAGNWYGVLAAVQSIAAVVWSYVLAKVPNNHHKLGYALSLGLGAVGFLSVFFIHSQSA LIVSFVLVGMAWAAMNTYPLTMITNALSGEHMGTYLGLFNGSICLPQIVASLASFGLFPL LGNAQENMFLFAGVVMAIGALSVGLIKETYKA >gi|238617817|gb|GG669604.1| GENE 94 97276 - 98151 828 291 aa, chain + ## HITS:1 COG:SP1721 KEGG:ns NR:ns ## COG: SP1721 COG1940 # Protein_GI_number: 15901554 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Streptococcus pneumoniae TIGR4 # 2 287 4 292 295 329 53.0 3e-90 MLLGSIEAGGTKFVCAVGNEDYRIIDSVHIKTTTPEETLQKTVDYFKQFKDLQAIAVSSF GPIELRKNSPKYGYITNTPKPGWANTDFVGRLKEDFDLPISWTTDVNGSAYGEYVMATLF NEKIESLVYFTIGTGVGAGEIVNGHFIGDIGHPEVGHVRLKRHPDDMDFKGICPYHGDCL EGLVSGPTFEARTGKKGQDIPLTDHVWDIMAFYVAQAAIQETLLFRPAKIVFGGGVVSEP FLKKVRAQFKDLLNDYVDVGDLDKYIVMPLVKNNGSATVGDFALAVEELNK >gi|238617817|gb|GG669604.1| GENE 95 98215 - 99216 1002 333 aa, chain + ## HITS:1 COG:SMc01214 KEGG:ns NR:ns ## COG: SMc01214 COG1063 # Protein_GI_number: 15965330 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Sinorhizobium meliloti # 1 317 1 324 347 168 29.0 1e-41 MKALVFTDVKKMEIEDIDTPKVKPNEVRINTAYAGICGTDHALYNGLPGSADAVPPIVFG HENSGIVAEVGADVTNVKVGDRVTVDPNIYCGQCFYCHTDRPELCENLSAVGVTRNGGLE KSFTAPATVVYPIPDDVSLKAAATVEPISCAVHGIKLLHLTPYQRALVIGDGFMGQLFAQ ILQAYGVHQVDLAGIVDEKLKRNKEQFGVKNTYNTTRDAIPANYDVVIEAVGLPQTQEQA VEATRKGAQVLMFGVGKPDAHFEMNTYEVYQKQLTIQGSFINPNSFEDSIALLQSGKLDV ESLITDELSLDQVEGVLQGKTKVASKAVVKVGD >gi|238617817|gb|GG669604.1| GENE 96 99223 - 99990 682 255 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2236 NR:ns ## KEGG: Lbuc_2236 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 252 1 250 251 394 84.0 1e-108 MQNNEEAEMNDSQVLNGRTISMTTSIIYFVISLVINSAGNVLTLVTSAKIHPSYLGSAYW TAAEANLSVAFGWNLFWAFLILGVVITILNAILVGHWSWRRALGNLIFMVPFSALIQIFE DFFIGKYSFFKGLPDANSTGMIIFYILLNFFGVALIGTAISIYQRVNLVLHPADDLMQIL RFKYFKGNANVAMWASYIPPTIMAIIAFIITKQFTNFGIGTIFAFLFQGGITGIADTRVF PSLKHQALDVGKSEE >gi|238617817|gb|GG669604.1| GENE 97 100020 - 100409 329 129 aa, chain + ## HITS:1 COG:BS_ywbC KEGG:ns NR:ns ## COG: BS_ywbC COG0346 # Protein_GI_number: 16080888 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Bacillus subtilis # 10 127 5 125 126 57 35.0 6e-09 MAIKDDITGIQHVGIPSKDLDKTIAFYESLGFDQAGLFHNGENRCAFMRFGNLTIETWEG DPVAMKAGAINHISLNTPDVEKAFADAKAQGLDLVDHEIQSIPSFWEKGIRYFNILGPNQ ETIEFCQIL >gi|238617817|gb|GG669604.1| GENE 98 101634 - 101840 219 68 aa, chain + ## HITS:1 COG:L0012 KEGG:ns NR:ns ## COG: L0012 COG0166 # Protein_GI_number: 15674150 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Lactococcus lactis # 1 68 381 448 448 116 76.0 8e-27 MSVHIPDQTPYTLGYLIYFFEIAVSISGYLNGINPFNQPGVEAYKTNMFALLGKPGYEKL GKELNDRL >gi|238617817|gb|GG669604.1| GENE 99 101914 - 102510 452 198 aa, chain - ## HITS:1 COG:L85237 KEGG:ns NR:ns ## COG: L85237 COG3548 # Protein_GI_number: 15672844 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 5 136 2 132 188 65 33.0 7e-11 MFRNSKSRMEAISDGVFAVVLTIMVLDIKAPMANISDYEIQRLMMQLLSYLISFGVVAQY WVLHQELFTTLKTTTFKIMVANIYYLCPICLIPFATTWLSSSFISSESAIGFAILMFIVN VSQLWLFHLVIEQNRHDGQRIIEHDVEEFRSVKVMVAISIVYIGVSLLMPKFLLAAIALG ILSRVLITRGIRFYLERQ >gi|238617817|gb|GG669604.1| GENE 100 102503 - 102838 372 111 aa, chain - ## HITS:1 COG:no KEGG:LEGAS_0222 NR:ns ## KEGG: LEGAS_0222 # Name: not_defined # Def: transcriptional regulator # Organism: L.gasicomitatum # Pathway: not_defined # 1 105 49 163 168 68 37.0 7e-11 MVVGGLISSEAGKGGGFSLSYDINRMTLLDVYNAIEGPSPIIKSTGIASRIFFDDQFVEV QEKKIFDQIGRAETQFKSGLKKENLGALLINPDGTHRQPIDWNRIGDDRHV >gi|238617817|gb|GG669604.1| GENE 101 103113 - 103808 296 231 aa, chain + ## HITS:1 COG:no KEGG:BP951000_0181 NR:ns ## KEGG: BP951000_0181 # Name: not_defined # Def: acyl-ACP thioesterase # Organism: B.pilosicoli # Pathway: not_defined # 4 213 1 212 232 65 22.0 2e-09 MFKIKSHIHLSDVGQDAKIRLGNLVDKFQNAGWIHFQELQKRLPSMDPRLLYFVVSQKVD IHTVPSLNEPVVLQSFITDANRFKITRLVEIRDAAKKLIASQIEDAFVVNKLTGKIARLP ENYPIHLMVDDLKKLTFHRDKIDVPAGGHQTESNFRVLPRDVDNYGHMNNARYLDLIAEH PDRIREVSINYLHPAKLGMELEYLRTQVDQSVFYTVRNGKQIMSKIKLALK >gi|238617817|gb|GG669604.1| GENE 102 103859 - 105229 885 456 aa, chain - ## HITS:1 COG:L184516 KEGG:ns NR:ns ## COG: L184516 COG0477 # Protein_GI_number: 15672362 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 445 9 457 467 288 39.0 2e-77 MSTSIVSFMSTIDASIVNIAVPKMSRDLRVPNNQAEWIVSVYLVLICVLLIFFGKLSDQV GRIRIFQIGTIIFVLGSLACGLSVNLPTILASRALQALGASMTMSTNFGIITDIFPLSRH GLALGVNSSFVQVGNIAGPGVGGLILSFANWHYIFFVNVPIGIIAFFLGHHFFPRSKPVH GRPKIDVPGFLSYAGMILSFFVMIFLGQMIGFGHWKIIGLMSLTVIFLVIFILIERHQKE PLINLSIFHNLGFSFGILSAMLVYMCGYFNNVIMPFYLQDRLLLSSGIAGLILMAVPIVN IVSAPTGGAISDHIGAEKVSFFALFIFIVPEIIFILVTPQWSILWLVVGLALFGCANGAF QNNPMIMGNAAPEFQGIAGSIAALGRNLGMSMGLALATSLLYHGISLKAGQRMTTYPDMH PDWFVFGMHYAYAFSLGLILTAIILLGIVLRRKQRT >gi|238617817|gb|GG669604.1| GENE 103 105415 - 106371 759 318 aa, chain - ## HITS:1 COG:BH2923 KEGG:ns NR:ns ## COG: BH2923 COG1609 # Protein_GI_number: 15615486 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 3 302 4 314 344 136 30.0 6e-32 MATIRDIAKKMGLSVSTVSRALNDNQRISIHTRKRVKKMAQELGYQPNYNARNLTNQEAN AVGVVFPVNNRVVDNIFYVGLLRGINEELTSKNYVLSVAIGNSTEQVLENVKSMITRAQI KRFILLYSHINDPVIELLRKQPVTFVTIGKPAAGQKWLYVDNNNVKAGADGTRFLMERYH VSNPIFAESPNGWPYELDRREGYLREMSQTNRKPVIFAVPDEDEHQLDRLIKENPQMDGV VATDDYTGLKIYHRFKTLHPDKEIEVVGYNNSLPNELTDQHFHSVDLHPKEMGQAAVQLL FENQIEARVKHTIVEHSI >gi|238617817|gb|GG669604.1| GENE 104 106520 - 107068 578 182 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2246 NR:ns ## KEGG: Lbuc_2246 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 180 3 183 185 209 71.0 4e-53 MKTSKSLAVILITTAGLGLVLAGCGKSSNKGSNPTSKTSMQNPTKDKTAKEALTSNDNLW YMNGSINYKSKTGIDAYKFDKAHNTVTIYSVGKMYKTYDDAKKANDLDKQGTLKYSFKND SAENPVIYMKGKLSDIPMDQTVSVKGKVSGKYHASDLKVSGFKVVRNLDNDDAKQVLVTP GH >gi|238617817|gb|GG669604.1| GENE 105 107304 - 108632 1154 442 aa, chain - ## HITS:1 COG:SPy1651 KEGG:ns NR:ns ## COG: SPy1651 COG3579 # Protein_GI_number: 15675522 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pyogenes M1 GAS # 15 442 11 440 445 382 43.0 1e-106 MAEIDDSLGKADFAQLHEDFVKAPKSDILSRVITQNGINQAAQDPDAQVRLDPVFSVDLQ TGSVTNQKQSGRCWLFSLVNTLRHGFAKKYKIKDFNLSQKYLFFWDKIERANIYYSRMIA TADRPTNDREVAFYLGMPGEDGGQWAMAAALVQKYGVVPVSAYPETSNVENTGAFDAVMD RKLRIDGMVLRDLVNAGKSDDEVAAARQKMLSEVYRIAAYSFGEPPTTVNFSYRDDDKAY HKISGLTPQQFYDQYFGVDLDDYVVISNSPDKDFDRLYSLPSQDNVAGGKQIQFLNLPMA VLKQTAIAQLKDGEAVWFGNDVLEQMDRKKGYLDSHLYRYSELFDVNLEMDKAKRMAYHQ AAVSHAMTLTGVDLDEQDQPTKWKVENSWGDKNGEKGYFTMADSWMNDYVYEVVVHKKYL TKAQQAILETAPVELPAWDSLA >gi|238617817|gb|GG669604.1| GENE 106 108774 - 109286 702 170 aa, chain - ## HITS:1 COG:L85854 KEGG:ns NR:ns ## COG: L85854 COG4720 # Protein_GI_number: 15672470 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 166 1 153 163 80 33.0 1e-15 MDNKSVGQRTQFRTVILTAMFVAVTLAVSMGIPPIPIPGTHGNINLCDGGILISALLLGP KVGGTVGALSGFLLDILSGYSNYAIFSFIVHGLEGLIAGWIKNRSTKKVVDVIAVLVAAV VMVIGYFFADSILYTFSAGFLGMFTNTIQGLVGAVIALAVTPFLRKRIHS >gi|238617817|gb|GG669604.1| GENE 107 109279 - 109875 567 198 aa, chain - ## HITS:1 COG:SP0663 KEGG:ns NR:ns ## COG: SP0663 COG4475 # Protein_GI_number: 15900564 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 179 1 179 187 181 51.0 8e-46 MALTTIKHNLSDVLTEYFDKVTFPKNGIFVVGCSTSEISGDWKGTNSRLDVGKAVVETLE EFLLPRGIHMAIQGCEHINRALLVERDVAEQHRLEVVSVVPAIHAGGGTQVAAYQRMTDP VEVEHITAFGGIDIGGTEIGMHVKFVQIPVRMAHRKVGAANVVCLSSRPKLIGGERARYD FTEENTKDYLLEGSQNNG >gi|238617817|gb|GG669604.1| GENE 108 109878 - 110738 525 286 aa, chain - ## HITS:1 COG:BB0768 KEGG:ns NR:ns ## COG: BB0768 COG2240 # Protein_GI_number: 15595113 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal/pyridoxine/pyridoxamine kinase # Organism: Borrelia burgdorferi # 7 262 4 252 264 108 29.0 2e-23 MISESSILVAEDFSAVGRMSMTAAISVLSGFGIQTAAIPTEVLSTQTEGFGKPVVSKSDD WIEQTVKHWQTIPDLNLKAALVGYVGSSATVDLLTTLLRTSKMNHVVIDPVLGDRGTMYD GFDDHYLDAIRGLIETATVITPNATELGLLTGTRLTPDSSDRDILSALAVFKKTVVHPIR VVVTGIRRDAGMGSCFSHNGKLAWNGSPFVSGHFYGTGDLFSALLSGYLNFGVGFESAVQ RSVFGTYEAVAQTAKLNVDRRKYGLDLTKTLNDVTKFTLGQKRGEL >gi|238617817|gb|GG669604.1| GENE 109 110933 - 111601 444 222 aa, chain + ## HITS:1 COG:SP1104 KEGG:ns NR:ns ## COG: SP1104 COG3619 # Protein_GI_number: 15900971 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 4 187 14 195 234 67 28.0 3e-11 MTFSTKNSLTTLLQTFIMGSIDAYTFQNFDGSFVSAQTGNLVVFAYELASKGWHTAYIRV PVLIGFLLGAFISQACKHLKLSTDRRFSIFLLLSVIFLGLFYGSMFTSINELNMLFTLGL FSGYELTVFNKIGGTSVNNAIMTGNLKNFSNNVYEALFSRDHAALIKAGQFLSGICMFIL GILFSTYALKANGTNVFLCALVINIILLIIVTIIKEKKPQQD >gi|238617817|gb|GG669604.1| GENE 110 111684 - 112652 670 322 aa, chain - ## HITS:1 COG:VCA0439 KEGG:ns NR:ns ## COG: VCA0439 COG1619 # Protein_GI_number: 15601202 # Func_class: V Defense mechanisms # Function: Uncharacterized proteins, homologs of microcin C7 resistance protein MccF # Organism: Vibrio cholerae # 4 321 13 328 334 332 50.0 7e-91 MITIGFCSTSTPITAISPKRFERAKAFLKTKGIRLVAGSLSGKRDYYRSGSILDRAIEVN QLIHNDEVDIIMATIGGTNTNAVLPYLDYEYLNEHPKTVVGYSDATALLLAVRTQAPNCR TLYGPALVASFGEWPPFVDETWTDFEKIIRTRPGETVTVKAPGYWDDEAINWNDFERPKK QHPNQWRSIGETRLSGRLIGGNLNTIYGILASKYFPKLVSGDLLFIEDAEKDAATVEKNF AMIRDAGAFDKVRGVILGKHALFDDLGTQRRPIDILLEVLNNQRLPIIYDYDSCHTTPMM TTPLGAQAVIDAEEGTATFSDF >gi|238617817|gb|GG669604.1| GENE 111 112919 - 114856 1387 645 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227507957|ref|ZP_03938006.1| ## NR: gi|227507957|ref|ZP_03938006.1| hypothetical protein HMPREF0496_0120 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0120 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 645 1 645 645 1315 100.0 0 MDITAAQNTPEGYSIAQSGSFRFNTTCKVREKPLMSDTGLTSYNDGQSVTYSGKEKRDGH FWLSFMGKGGVTFFVPYANLSTGIYFGTDSNAVDPIKIEDDQPTPMIGVDTGVPKLSGVI PESTLADYDFPMSGWVTMSEDGAQVRSKPTFFDNLTDERFPKDHTHKIRYVGKTAGSDRM WVKLGPSRYLPIGKLSTLGNVIKMSKGGRFEKAGYVTDQNSAQPWEQIWPYTKPIGGTKT DKEWHVIGDVGSPNTASWETANQPIKKEIPSTEFQPSSTELKALKTFNKQVTRNAPFDAV YIAYIADTHIDSYQTPASAEVLHSMMLMSDYAKKYGVDLMIHGGDLNDGAKPHDLSKIDI QLGVDAMKLGQRPYIILQGNHDDNSGYVRDQAGYQLDQLMTNEEAWRLRAGALNRPDNGN NAVYGTYNIPNSQVTIIVLDGFDQPDIETRRTTLGDGNVHFDSFRHGYSRYSDQQLNWLK NEALPHVPEGNKVLFLNHIALGGIKTWQNTWSKENQLSIDEYARNLFENNVVTNRPGFIE NQQVLKDIINYQNATHNVIGYISGHTHQDNQALYHGIQFVTTTCAIADRGDGSEKNFNPQ NSARNLTDLTSNAWSIFRISAHSGEVAQFRFGWKNDRYFLPGWHF >gi|238617817|gb|GG669604.1| GENE 112 115044 - 115523 265 159 aa, chain + ## HITS:1 COG:no KEGG:SGO_1480 NR:ns ## KEGG: SGO_1480 # Name: not_defined # Def: ribosomal-protein-alanine acetyltransferase # Organism: S.gordonii # Pathway: not_defined # 5 155 2 149 151 132 47.0 7e-30 MVWQVAQLTQENALIVANDWHYDGKYAFYDMTADPEDYQEIISPVLRKDHYYQVLNENKT LVGVFAIEPIDTEKGTYELGLGLAPRLTGQGLGQNFLDFILDDIQKNFSVSTIILDVAEF NVRAQKVYQKLGFKAVRRHSQKTNCSTYPFIEMRRDFRN >gi|238617817|gb|GG669604.1| GENE 113 115769 - 116227 460 152 aa, chain - ## HITS:1 COG:no KEGG:EF2143 NR:ns ## KEGG: EF2143 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 122 155 65 36.0 8e-10 MNVLEDLERKYPELHFEICHLPCQLKGLTDGNYIYLSDTLDPKTLLQTAYEEVEHALLTA GDILDTKDIGNKKQEVKARDRGHQKLITLDGLIYCANHWFSADETADHFGVTVEYLYQAL GIWRQKKGLEFNWDSYHFDLSQSYDIKIKRYD >gi|238617817|gb|GG669604.1| GENE 114 116245 - 116586 354 113 aa, chain - ## HITS:1 COG:no KEGG:MCCL_1543 NR:ns ## KEGG: MCCL_1543 # Name: not_defined # Def: hypothetical protein # Organism: M.caseolyticus # Pathway: not_defined # 5 81 2 78 209 79 44.0 6e-14 MAKKIDNRTVLAENLKHLISQKGITRRQLSSDLGISYTTVSDWINAKNYPRIERLEQLTK YFNVSKSELIEEPQEQANANVQAIAAHVDHEMSASERQQVINFIENLKRARGN >gi|238617817|gb|GG669604.1| GENE 115 116916 - 117260 318 114 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227507961|ref|ZP_03938010.1| ## NR: gi|227507961|ref|ZP_03938010.1| hypothetical protein HMPREF0496_0124 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0124 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 114 2 115 115 199 100.0 8e-50 MKKISAKQQRAIDALKHDSDNQLLIQKLQWESTNTDHGDQIENNPQLRDLIYTHEVIKHC LANTSAPTRAIITDMYLHQSDLNTEGIAQKLHMTRRTLYNRRKKFLDELIRLLG >gi|238617817|gb|GG669604.1| GENE 116 117440 - 118891 1409 483 aa, chain + ## HITS:1 COG:CAC1108_1 KEGG:ns NR:ns ## COG: CAC1108_1 COG3757 # Protein_GI_number: 15894393 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Clostridium acetobutylicum # 9 183 35 196 217 70 31.0 7e-12 MATNEVADISSYQDDSVSFMQSLAQYAKSVIVKITEGSENGDAYVNPKAKAQVANGFKVF KAVGAYHYLKANSQKYGAADPVNEAKWFIKNLEAVGLNKKTVCAVDVEDASLMENTTQDV NTFLQYMDQQGYQNLVVYGSASWFNSGRIEKANLFKNAPIWVASYGSNEPGVDNASAWQY TDNGHGLHVDFSYDFKGILLGDASGNQGTTTGGGSTTPTTPTDALHQHAQQVYTYLNKKG LSDAAICGILGNFQHESNINPNQWQIGMPQTWSMNSSTGYGIAQFTPAGKIKVYADKVGK AVSDINVQLDYIWNQVTATGGFYGGSKSFKQFAHDTDPKVAALDFLQGYEMHSASTDALA DRQKNAETWWAIYNKGNAGTYGDGSSTGGTTTSTPDGYTIQSSGTFTFNTNCKVRNKPLM SDPGLATYKAGQAVNYDQKEKNDNHYWLSYLGSAGTRHYVPYANISKGTYFGTDTHPGDP VKL >gi|238617817|gb|GG669604.1| GENE 117 119164 - 121422 1525 752 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227507963|ref|ZP_03938012.1| ## NR: gi|227507963|ref|ZP_03938012.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 752 1 752 752 1288 100.0 0 MDTTAAQNTPDGYTLSESGQFQFNTNCKVRSTPDMSATGESTVKAGSYLNFDGREKNGNH FWFYYTDATGVTHYVPYANIDDGQYFGSFTNGSSDDPIQSSSTGGNTGSGDGGSVTGTGL GTLTGQDGANVANQTPDGTSLAIDGSFTFDIPMAAHKDSTAESSVVGPIDAGTTLNYNGK VKDDNYYWLRYEDVSTGNTLYAPYASIDPFQYYGTDSNPGDPVYASGTGTGSGSGTGTGG SSTGSSRTQGGTDTGTPTLSGQTPVSSLEGYEFPSNGIVHMDSGAATRTAPVFDDSHETG TTHKAGDNVHYVAKTNGNDRMWVKFTDGNYMPIGKLDTLSGHDKSSGTFNGTKFHEQVGY VHDQNYEQPWQDIWPYIQNTTNTDWDSLEDSNSIETETVDTNFTPSSDEQTQLEQFNEQV NNSADQHDDDVLIAYITDTHYDSYKTPATARVLHSMMLMSWYAKTYGVDLVVHGGDVNDG VKPKDLSKIDVNRAVDAIKLSQRPYIILQGNHDDNSGYARNITRNDTTQVLGNDDAWNIR GSQWLNRPTQNRNNAVFGTYDVPNSNLSIVVLDGFDQPDELEDNGKVDFYSFRHGYTHYD VDQLKWLPGALNNVPAGNKILVFDHISLNGVSGWKQEERSPFENNSITNPTGVNESNEIF RDLTNYQSNNRNILGTIVGHTHEDDQTVAGGIQFIRQTCALSDRGDGQGQRTIDGRDNNA WTILRISPSAGTVHQYRFGWSNTGTFLNNWSL >gi|238617817|gb|GG669604.1| GENE 118 121677 - 122612 563 311 aa, chain - ## HITS:1 COG:no KEGG:LVIS_0012 NR:ns ## KEGG: LVIS_0012 # Name: not_defined # Def: D-alanyl-D-alanine carboxypeptidase # Organism: L.brevis # Pathway: not_defined # 14 213 8 176 258 86 34.0 1e-15 MKKKSLLLTTLITTLGVGVISVGSAVLTHASVRYYTVKTINRDNLPYHVTTQRSAYVYNV SHTRKLHNLKNYPNTTWYVSKSLLMRSSYTGRKAVYYYVTSGNGRASGIVWRGYLTAGVN SGTSTMPNTGSSSSNNSSTDTSSSSSSSNVSSDASASTSTPTYSTDSTQFNSKEASTFNK QILQLAPGLIEDQRLDDLASYSLWLNDQYNHDDQPLFSGRLVKLYGGSPQGLLQDWGFVQ NPDIYTVKSQLSNRLNEIDFSNLDQYQGYHIGVASEAESDNPGGGKISRVNYYVFILPAN PKITPSTYKPV >gi|238617817|gb|GG669604.1| GENE 119 122919 - 123371 310 150 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1507 NR:ns ## KEGG: Lbuc_1507 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 145 1 152 155 93 38.0 3e-18 MVKEISSGFNWAQAAGVLWLIAAVIGTIYKQLHPLITTKINSEKNGQVKQALQLADQLAA VIVPEMAVMAGLSKAERKKEAIRFLSDKLMANGFKISQETLSATIEKAYQEYKHVTQGDN HLPTADASKSVTPKQSAGTNTPQQSSAHGK >gi|238617817|gb|GG669604.1| GENE 120 123454 - 123711 320 85 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227507966|ref|ZP_03938015.1| ## NR: gi|227507966|ref|ZP_03938015.1| hypothetical protein HMPREF0496_0129 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0129 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 85 5 89 89 128 100.0 1e-28 MSERGTEQINFTKTLIDIKTDVARISTKLDDLNAISNKADRALETATETQREIDQLSKIQ NWLIATLVTGIGTPILIIIVKAWLT >gi|238617817|gb|GG669604.1| GENE 121 123861 - 124820 711 319 aa, chain - ## HITS:1 COG:no KEGG:LVIS_0012 NR:ns ## KEGG: LVIS_0012 # Name: not_defined # Def: D-alanyl-D-alanine carboxypeptidase # Organism: L.brevis # Pathway: not_defined # 29 206 26 159 258 79 31.0 3e-13 MKKKSLLLTTLITTLGVGVISVDSAVLTHASVRYYTVKTINRDNLPYHVTTQRSAYVYNV SHTRKLHNLKNYPNTTWYVSKSLLMRSSYTGRKAVYYYVTSGNGRVNGIVWRCYLTAGTN PGASSDTNSGDSTSNSNSADNGGTNTGATGNNNSSTNSNSGTNSGLTGSSTTTYSTNSNQ FNTKDVTAFNKQIIQLFPGLLEDQKLDDVASQDLELSNKYNYGDQETLLDKYIVQTYGGH PYGLLEDWNAVAAPNVSLVKKQVADPLSTIDYSDIEKYKGYHIGVASEAKSSSSNSSKIT KIDYYIYILPANPKITLAS >gi|238617817|gb|GG669604.1| GENE 122 124883 - 125833 558 316 aa, chain - ## HITS:1 COG:no KEGG:LVIS_0012 NR:ns ## KEGG: LVIS_0012 # Name: not_defined # Def: D-alanyl-D-alanine carboxypeptidase # Organism: L.brevis # Pathway: not_defined # 14 134 8 135 258 83 41.0 9e-15 MKKKSLLLTTLITTLGVGVISVGSAVLTHASVRYYTVKTINRDNLPYHATIQRSAYVYNV SHTRKLHNLKNYPNTTWYVSKSLLMRSSYTGKRAVYYCVTSGNGRASGIVWRGYLTAGVN SGTSTTPNAGSSSTNDSSTDTGSSSNASTTGSPNSGSTTADKTTLKQQFQAFLAMPQQTA ETQIMNKVKQDLAGKYTFDTNLMNYADYTQHYGENNPNISDPNDTAIAARFGLNLDNLIQ IGDDVDDYDSSWFDNVKDDSSVTGNSYVNAFAKSIEDGIIGLAKAHPDYTKIGFGIIVAQ PHTYTRSVGDAEIVEK >gi|238617817|gb|GG669604.1| GENE 123 126132 - 126911 391 259 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2081 NR:ns ## KEGG: Lbuc_2081 # Name: not_defined # Def: abortive infection protein # Organism: L.buchneri # Pathway: not_defined # 9 254 13 255 259 137 35.0 3e-31 MEESSRYIWQVAGLFATLIIAMAFLAVILFTVKRSVTISQSVMIWVQDVPLFAIFYFINR RFTKQKIGIKPTISWGQLLVVSWPLYLAIAIAVSEIVIDRNLYWMLAISAGLCAGIFEEF LFRGLILGILLKAFMHMTKKRQVWLAVVISSVLFGLIHSVNVLRQPIGDTALQMLFAVWF GLILSVLYLRSGTIILPMLFHGTWDFSIGIAKGSINETATVTLAEIITNVVLFLIVLLIC AYCLRQKKLNSINLTKLLA >gi|238617817|gb|GG669604.1| GENE 124 127127 - 129031 1163 634 aa, chain + ## HITS:1 COG:CAC0625 KEGG:ns NR:ns ## COG: CAC0625 COG4934 # Protein_GI_number: 15893913 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted protease # Organism: Clostridium acetobutylicum # 50 633 54 623 625 279 32.0 1e-74 MKFKKIILVICLSTVTTLLISSSEIYADKNPINTVYKSLTNGKLIKPAHLSQNTTTSFDI ILKPKISPLKTASEVNTPGSANFKQFITPGTLAKTYGQSTAIINRWTRFLKKKHLKVTNF NNIVLNVNGKAKNIDNTFKVDINTAKYHHDPLQFGKRRPRFNKTLQNSVWFLSGLTDHNP NYRLPADSGFASSSSNSHPGFTKRFTDRYNVTPLYRKGLTGSGQTIGIIAFGNLRKTNAF HFWRHEKASTDPERLSIKRVTGPQTHPRLVSNDELETTMDTEYAGSVAPNANIKVYLVSD ALPSITNMINAYLTAFHQNTASSLSNSWGLSYGSNYAQLLKQHLVSPHFKQLLDLVLSQG ALQGISSFTEAGDYGALNLASTKSSYRKRTLLDINTSSADVLSANPWITSLGGTTLPFKG DVYASGQKLGRVTVKKERSWGNDYIWPLLQQHSSFLAKNPYQIVESINGGGGGFDHDYAT PSYQLNVPGVNTFNARNYLSNLGQQIYNQPLLSGHNYGRNYPDMSADADLQTGYWMYQQE KGESPWNAVGGTSIVSPQYAAVAALINSAPNHARMGFWNPQIYQLAQSSNSPFTPLNATT DNSNLYYTGQPGKLYNQASGLGTTNFAKLFAEYK >gi|238617817|gb|GG669604.1| GENE 125 129318 - 129701 174 127 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01999 NR:ns ## KEGG: LCRIS_01999 # Name: not_defined # Def: cytosolic protein # Organism: L.crispatus # Pathway: not_defined # 13 115 1 104 110 77 38.0 2e-13 MRKKLLIGSTIPMKTNDLITLYVSFVQTKGGKSRPVLIRKVASQTVEAFKITSKYQNKSA YIKQQYYPTKNWQSAGLNRPSWVDLGNLYQFPKTGLKFKEIGHLSRLDQIKIADFAVKLR AKRKLES >gi|238617817|gb|GG669604.1| GENE 126 129655 - 129936 382 93 aa, chain - ## HITS:1 COG:no KEGG:LPST_P0022 NR:ns ## KEGG: LPST_P0022 # Name: orf1 # Def: DNA-damage-inducible protein # Organism: L.plantarum_plantarum # Pathway: not_defined # 1 93 1 93 93 130 81.0 2e-29 MAPKEKKRVQVQIDKDLADDTEAVLNELGLNQTTAINMFYKQIVADGALPFKPALNEAKK ANLRFLKATEKTPVTKFKNAQEVADWLNDPNED >gi|238617817|gb|GG669604.1| GENE 127 130655 - 131419 509 254 aa, chain - ## HITS:1 COG:SA2303 KEGG:ns NR:ns ## COG: SA2303 COG1277 # Protein_GI_number: 15928094 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Staphylococcus aureus N315 # 1 252 1 254 256 64 28.0 1e-10 MAFSIYQEFYKLMYKKITWISPLILLALMIMSGYTIGFNEGKLLTMTSYNSPDWIMFILV IIGATTFSMEFQNNTILTLLYKASNKIDVYLSKYVMIFGYNVFLHVLAIIFTVGLRYAPM NAQVAWSTSYRYQQPLWENMLKTSAIDLLTTMLIVSLVFLLSCLINNNAVVISVSFLVVF MGQFVTGSLLNSGRFATVLKWNPLNMINLTREYYNYITYYATSHLANAQLLIGTLFYMTL FFALGYLIFRRKRF >gi|238617817|gb|GG669604.1| GENE 128 131444 - 132118 462 224 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0158 NR:ns ## KEGG: Lbuc_0158 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 19 224 54 258 258 90 28.0 6e-17 MAYSSISSNVGFVSVSFGFGAVQWIPIILIAVGSAFFAMEYNNNTIIMLLYKNSNKLKIY LAKFLVVFLYGVLLAAIAILFTFILKIILVGNKYRWLADYVGHESLLDSLMLHIVGTIIY SFFIVALSFMLIMLVKVNAAVIAIGLALGFLGASISTALMKTYSTLLAVIKWNPLNMIFV TQQLANRSYANLSQLNGWQIIVGTIGYGLVFATLGYVLFKHRRI >gi|238617817|gb|GG669604.1| GENE 129 132192 - 133094 231 300 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 292 7 303 305 93 25 2e-17 IEGNLMLKVTDVNTFIGRKRIVKNVSFQVNSGAIVGLIGPNGAGKTTIMKTILGLTKFTG GISVSDELVTENNHNALSKVGALIEYPAIYPFLTGSQNLELYSYDKQDVTNIVSMLQMDA YINNKAKGYSLGMKQKLGIAIALLNHPKLIILDEPMNGLDVEATIGVRKIIKQYAKQGTA FLISSHILSELQKVMTRVVLINDGHVIVNRDIETFNQISRQKYKLSTERDKLAMQLLESN HISISNNTDNFLVKKEDLFRAQDILYQNKIHLKEILPAEANFEQLIVSILEKQRRQQHEE >gi|238617817|gb|GG669604.1| GENE 130 133313 - 133903 169 196 aa, chain + ## HITS:1 COG:no KEGG:LSEI_2759 NR:ns ## KEGG: LSEI_2759 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: L.casei # Pathway: not_defined # 9 164 10 157 185 71 34.0 2e-11 MNSKLIENLKFFRKQNHLNQNQLAIKLNVSRPTISSWETGRTTPDIDTLVRIASFYQVPV DQLLFTRSHSKGNINKSQKHILGILLMILIIERFTVDAPPAARGWIDILALIPALLYLPL ALVNRNWLISRISLPIYTAGLFLFGVLGIGSSVINLFSMGPGFQTSCFICGLIALGYLGK NKLTYLFWRIREITVS >gi|238617817|gb|GG669604.1| GENE 131 134012 - 135943 939 643 aa, chain - ## HITS:1 COG:CAC0625 KEGG:ns NR:ns ## COG: CAC0625 COG4934 # Protein_GI_number: 15893913 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted protease # Organism: Clostridium acetobutylicum # 58 642 58 623 625 295 33.0 3e-79 MKKVFGWIGLVTSVVGSCFILNMQVQAATSPLLQASVPGMYKMLTTAKNVSPTPMKKTQT TCFDIVLKPDSFKNIRNAALAVSTPGNADFKHYLTPGEFGSKFGASETTISQWQRLLKQH SLKARPLKNQLIIQVSGKVGRIDKLFRTNLNTARYHSNPLQFGAKAPKIPGKLSKTVWTV VGLTDHSRGYINTNTFLPFRRTSRRKSGQAKLGFTSRFTNHYHVAPLYRKGMTGKGQTTG IIAFEGLRKSNVFHFWKHEKVDTNSGRLMIKQVASPLYRPKDVVRSSDETTMDAEYAGSV APKSNVRVYLVNNPYPTLTNFVDVYEQAFNDNVVSSTTNSWGLMDSGTIAILRHRRLLTP AYRQLLTLVLAQGAIQGVSNFTASGDAGAYNYMIKSIKGKQLMFDRTLSSSDFFDSNPFI TSVGGTTLPFRIKTKLGSIVNRHERAWGSDYVWPILQQHPSIIQRVPISLLEYTAGSTGG FSHQYDTPAYQMNVPGVNTFMARNLISALGQPVFGSQTVTGTGYGRNYPDVSADSDAVTG YWIYQKTKKYPKKPWSDGAGTSIASPQYAAAVALINSQAGRKRMGFWNPQIYQLAQQPDS PFTPLNSTQSNSNLYYVGQPGTVYNQATGLGITNFDKLAQAYK >gi|238617817|gb|GG669604.1| GENE 132 136193 - 136402 209 69 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163756262|ref|ZP_02163377.1| 50S ribosomal protein L20 [Kordia algicida OT-1] # 2 66 3 67 67 85 61 8e-15 MIKVNLDLMLVKKEMSSKELAMKVGITQANLSILKTGKARGIRFETLDKICSALNCQPGD ILEYVEGRG >gi|238617817|gb|GG669604.1| GENE 133 136418 - 136951 344 177 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227507979|ref|ZP_03938028.1| ## NR: gi|227507979|ref|ZP_03938028.1| hypothetical protein HMPREF0496_0142 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0142 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 177 1 177 177 279 100.0 6e-74 MIKKSEKLPLSLLYYFSLLILGIYVITLLSGGFIFVYKFIGIIFNIESINSFAQQTGIGG SSHPVWGIVTALLLYFLLIFQTIFVYFITKLLNKLRTNKTFIESNLKNIKWIMYSFGWIA LLDGIGALLRNIVPYGFSALPDAGGLQIEIIAWFAFYVIYIVFKHGVQLQDDANRII >gi|238617817|gb|GG669604.1| GENE 134 137066 - 137971 276 301 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 5 293 9 306 309 110 25 1e-22 MKNILVVNNLTKIFGNNRGLKNISFEIPKGSIVGLIGPNGAGKSTIMKCILGIYPYSQGN ILFENKNIKSQNNHSINKKIGSLIESPSLYPFLTGMQHFKLYSVSKSGAQNVIALLKMEN YINEKVTNYSYGMKQKFGIALALVNNPDLIILDEPMNGLDLASTLEIRKIILTKSAEGTT FIVSSHILSELEKVVTHIILINHGRVVLQGPFQKLKNIGKQYYELSTSNNLKANKILLNH NFLSNIEASGIQVQLSSKNLNEALDFLLRNNVKIIAINHHSVDLETVALHYIQNKEGNQH A >gi|238617817|gb|GG669604.1| GENE 135 137964 - 138731 263 255 aa, chain + ## HITS:1 COG:SA2303 KEGG:ns NR:ns ## COG: SA2303 COG1277 # Protein_GI_number: 15928094 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Staphylococcus aureus N315 # 1 255 1 256 256 77 28.0 3e-14 MLRLLYQESFKLSHRKGVFYFTLLLLAFMLLNVASTKDSSNQRYFIAISFDAFQWVDIAL IVVGANIVSSEFEYGTMKRLVADYNNKFFIYIAKMFTLLEYDIILHILAFTLTLILKTLF FGNHNSLNSIYLNHQSLINNIVTTTMSNFFSTFLIIVIVFMIASMSRTSALAATIGFGFI MFGSGLSGIIIQLCGKLFPWIKWNPGNMFNIGNQPLLHSVEKTSLLTNPQLIIGNLVYIV LFTIIGYWAFSRKRI >gi|238617817|gb|GG669604.1| GENE 136 139391 - 140521 970 376 aa, chain + ## HITS:1 COG:L124252 KEGG:ns NR:ns ## COG: L124252 COG0620 # Protein_GI_number: 15672700 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Lactococcus lactis # 6 374 2 368 369 470 61.0 1e-132 MTDTATKIKFPYRYDVVGSLLRTQALKDAHEKFKKGDITADQLQQVQHDETRKIVKKQVE LGLKDVTDGEFNRSWWHLDFLWGLTGVGHYDYHQSYKFHGSKTRTDNADLVGRIAYNPDH PFFDSFKFLKSITPDGVTPKQTIPSPSMLFRDNRSDNWSKFYTSWEAYLDDLATAYHQTI QHFYDLGCRYIQLDDTTWAFLITKLNETADDKDEHQRYVQMAEDAVQVINQLLKGLPDDL TVTTHICRGNFKSTYLFSGSYDDVADYLGQLNYDGLFLEYDNQRSGSFAPLDRIWNGNKN KRIVLGLITSKSPELEDEDQIINRIKEAEEKVPLDNLALSTQCGFASTEEGNKLTEDQQW DKLRLVKRIAEKVWDA >gi|238617817|gb|GG669604.1| GENE 137 140751 - 141158 280 135 aa, chain + ## HITS:1 COG:no KEGG:LCAZH_1202 NR:ns ## KEGG: LCAZH_1202 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_Zhang # Pathway: ABC transporters [PATH:lcz02010] # 7 135 128 256 256 94 39.0 1e-18 MQIVIFFLAGILTGMALGRNVGTSWANLFGTTLLTALIVAFFIGVVFSMAIVILMLTGSL IGSAVFIIIFPLLVSIISMISKWDWLKYVDFFGVSVKISLKQLSVSQFQPYIWFSVAILI ICFGLSLILIRRKEL >gi|238617817|gb|GG669604.1| GENE 138 141544 - 142725 516 393 aa, chain + ## HITS:1 COG:CAP0086 KEGG:ns NR:ns ## COG: CAP0086 COG0477 # Protein_GI_number: 15004790 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 13 379 12 380 401 75 23.0 2e-13 MKTNYPTNINTGYAYTFFSFFGITGLWVIYLQMQGLSLVEIGLCESIFHVASFLFEVPTG VLADRFSYKSVLIGGRIASILSAVIMLTSHTFLMFAFSFVLSALSYNLQSGTIDALMYDS LIDTRQTKAYPKIISTVNVLYEFGDTAGVVIAGFFVHWHFELTYVISILIGFFALISILM MKEPNVTPSKVSAQVPETIGSILRTSYRVLKTNRVLRNLMFFQAVFAGICTSYYFYFQSL MEKAHFSGLMISLLMVTSAAVNIVGIHFTPIIQKRFPKAVLVNSLSWCLIALLLVSWLDW IPMLMMLFLASQLLSSLVEPIFSSYYNEMIDSKQRATLLSIASVLFSFAMIGLFPLVGWL IEHHNFSFAFGTIGGIILILYITTRIKSRTVLK >gi|238617817|gb|GG669604.1| GENE 139 142894 - 143469 699 191 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227507985|ref|ZP_03938034.1| ## NR: gi|227507985|ref|ZP_03938034.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 191 1 191 191 79 100.0 1e-13 MKKTLLYLTAAVTLFSVGSVASASLHTNNTDNVTATATSGSGTTATSGSAVSSSSTSVSS SSTLTPTESSSSTKTPTVSKHAKAVKSAKAKVAKAKATAKKYQAAYKKAKKSATKAKYLK AYKKAFASYKSAQAKLATLQHPTAVKNAKAKVAKAKANYKKAKTAANKAKYLKAYKAAQA NLNKAYAKYAK >gi|238617817|gb|GG669604.1| GENE 140 144620 - 146275 1090 551 aa, chain + ## HITS:1 COG:no KEGG:LSA1584 NR:ns ## KEGG: LSA1584 # Name: not_defined # Def: putative teichoic acid/polysaccharide glycosyl transferase # Organism: L.sakei # Pathway: not_defined # 14 550 7 514 514 233 30.0 2e-59 MIVFSKIKIWLSNKSYLILFLLISVWFMGFASYTSPLFYFDYSPDNNCFFTVGKALVHGI LPYKDVFEQKGPYVYLMHGIAYLLSSRSLLGMFPFEVLSLFLSMYIVYKIARMYTFQLAS CAIAILIPFFQLFHPYYNYGDTVESLLFPAILGLIYTLLKGDRNHFVISRWLWSLQGFLV GLTFFMKYTLLGGWIIFYLAMFAYYLKHKSWKEVSKMIRWSLLGFLVAIVPWLIFFLATH SLSAFFHVYFYENMHIYMLSDNSVFAKFIESLTIYSSFLRQDPLIFVCGFIGYIYLLFSK SAFKTTWGKMLFVMMMVVNAAFIVYGYHPGQVYQYYELAFFPYLVIPSVFAFVNAIKKFD VKINDQNESIVLLSCALLSFFLVLGVNDNILSSKIFPNNGSVTLNQTNKPQQPAQVEFGN IMRAQSNGRPTMLNYGSIDMGFYTTSGALPSTYYFQNYNIEHDKAPQILNGQLDVIKKHK VQWIVLNTPAGIQINKWNGYTGAQGKITSGNLNPGTKKISKILFKHYRIVTNHTQNFESA NVTYWLLKRKD >gi|238617817|gb|GG669604.1| GENE 141 146564 - 148039 551 491 aa, chain + ## HITS:1 COG:no KEGG:LKI_04285 NR:ns ## KEGG: LKI_04285 # Name: not_defined # Def: hypothetical protein # Organism: L.kimchii # Pathway: not_defined # 4 485 75 556 562 100 22.0 2e-19 MSMYPKLPLYLFVACRLIIQQPIISYYVGIILMTFIGMVVAYFCYLSVERGKKIGAYIFA IIYMMSGLIVNYNFYMGDIGISFSLIFLPLAFTGLFHWISTGKYKMLTLGISLICLSHVL NVIFVIVTMIIFTLINIQKLSKAKIVNLLKSIGITILITSSFWLPALSFGTSTKMVKPYN ALLQGINIPDYLLRSLSNNVTYGITFFAVLGLVLGSIYYRRLPTYIRQALWVAIGYFLIS SNLFPWKIFQHTGFRLIQFPWRLLIFTQLFLVFIFSYLISRLLEQSSHKQINGLITAMLI IVTVALSLNTQQRHLKFELGAPEISAPLDENYGIGFKNTVAWYKITNKYEYHHLMAFNST GDYLPQNAFTVFKQIASKSHFAALHSPDGLLPTTLKSGADQSTISFQTSQITNKIELPFV IYNHHYQIKLDSKKIPLNISKHQLLLIKNVKAGTHTVHVQYKNNAITIAVALMTVAGLIA IIYVPKKHHSV >gi|238617817|gb|GG669604.1| GENE 142 148043 - 148408 262 121 aa, chain - ## HITS:1 COG:no KEGG:LPST_C2159 NR:ns ## KEGG: LPST_C2159 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_plantarum # Pathway: not_defined # 1 119 12 128 129 127 53.0 1e-28 MRDENDFILRQIRAFAEGLGYILSHGKGGQSEAEIVFPEKQEQKLPYQNELQELIDKKQY ADAAKRLLSLQYAMTEAQFMKLGIWFYSELNEYSDDQLVEGNFSKQSIITGLNQLKALRE K >gi|238617817|gb|GG669604.1| GENE 143 148601 - 148783 89 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227511007|ref|ZP_03941056.1| ## NR: gi|227511007|ref|ZP_03941056.1| hypothetical protein HMPREF0497_0129 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0519_0908 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0497_0129 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0519_0908 [Lactobacillus hilgardii ATCC 8290] # 1 60 1 60 60 95 100.0 1e-18 MTFNHNFYKTFPFWCGLVILSNLLLMSDCPVFGAFWWYHVICTLIGFIMILYSFVASSSE >gi|238617817|gb|GG669604.1| GENE 144 148743 - 148943 97 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227507989|ref|ZP_03938038.1| ## NR: gi|227507989|ref|ZP_03938038.1| hypothetical protein HMPREF0496_0152 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0152 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 66 1 66 66 91 100.0 2e-17 MNYFANSKDKLNGRLENWPKSKGSNQSVLLIRSLYSSMNNIQLNVYIKEKSLTVIQNWKQ QMNTKS >gi|238617817|gb|GG669604.1| GENE 145 149009 - 150214 1100 401 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1881 NR:ns ## KEGG: Lbuc_1881 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 3 385 2 388 389 251 40.0 6e-65 MRKRIFTVVGLGLLATITGFITEQPVQAKSQNSYQVVKSKDYSHVYSDKKHAVRLPFHAK TTHTAYMWNAHHTKKLHNLKNYQATTWFLAKSVVLKHGNHKRVYYQVKNTTQSMSGYVWK GYLAKGYSPKGYQIVQQKWANQSGSYYPRYYGQDVKMWNYNHSKVRVHLKNFPGMNWYRT ETVVMRHGNKRAIYYYLSGTLRGNGRTVGGYVWRGYLKRGINPNHTGQNYVPIDDFLGDT DYNQYVQTAKYQKLAKQIAALFPYSKIDYGLSRIAAYNYDAANQSIMSDEDVKPIGTGGY SNIKAFPDIDRYLLKHSSWSDAKKLNAVKTMLDEAGYDSDKRVSMAGYQIGIQIIDNIPD ILGQIVASDGNGYANGYAIVIGQQDPTGNSENNDKSFFYYD >gi|238617817|gb|GG669604.1| GENE 146 150289 - 151176 467 295 aa, chain - ## HITS:1 COG:L82521 KEGG:ns NR:ns ## COG: L82521 COG0726 # Protein_GI_number: 15672664 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Lactococcus lactis # 50 294 31 270 276 173 35.0 3e-43 MNKTTRKIILSSVIVLFLIALAISVHHNIKYELGNRPSYAISARDQHIKNGVMVFCYHRV LNNNDMVKFDENVSPNSQFHDFNVNLPAFKRQMNALQANHIKVISLPKLIKIMDTHQPIH GKYVVLTFDDIDRTMIDNAFPVLQKHHYPFTDSIITGNTGWYKSGTKLATWPAILRMRKR AGKLVTFAVHTNRMHYLVDHGTPVFNIPSNFVRFKRDYAVSQTVLKQKVGYQSPIFTYPY GSGTPQIQKFLADRPGLKAILTLNNGIVTDHSDLKQTPRVIINSSSWPSVSKWIS >gi|238617817|gb|GG669604.1| GENE 147 151169 - 151414 224 81 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0161 NR:ns ## KEGG: Lbuc_0161 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 66 19 84 84 65 62.0 5e-10 MLRRAIILIGLWMGTGYIVYINICFLLNVYSDALVSDYLVLNLSFRSYAIFALLVVVIAS LMIIFGWLRIRKLKRQAKDRE >gi|238617817|gb|GG669604.1| GENE 148 151474 - 152688 1062 404 aa, chain - ## HITS:1 COG:L80399 KEGG:ns NR:ns ## COG: L80399 COG1215 # Protein_GI_number: 15672662 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Lactococcus lactis # 7 347 10 349 354 264 39.0 3e-70 MRTLSSFVILYPVIVSMVWIIGSVFFSIQRRQVPLINLHEGKPADLVSVLIPAHNEADTL ENVVVSVADMTYSKIELILINDGSQDATLSVMRRLVQKYKQQFPIKIVDVQPNKGKANAL NQGAQIAHGKFLLCLDADCYVDRHVLEPMLAQFYNNPRVGAVGGKPIVRNRTSILGRLEL LEYVGVIDIIKRGQAFVTGHITTVSGVVVAYRKEALADVGWWNTDAITEDIDVTWRLYHH QWQVVYCPQSVAWILVPEHIKDLVHQRRRWARGGFEVLFRNRGMLVTGRLSEQWLLLDMI LSDLWAISCAFVTLFYLMMVAFTGDLIMDGVILFLLLLISLVQFIIGYTDSKKSDFISWQ DLLLLPLYVVFYWFINLISCLTALGSFFLDPKHVGSWRSPDRGL >gi|238617817|gb|GG669604.1| GENE 149 152734 - 153870 784 378 aa, chain - ## HITS:1 COG:L126168 KEGG:ns NR:ns ## COG: L126168 COG3525 # Protein_GI_number: 15673476 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetyl-beta-hexosaminidase # Organism: Lactococcus lactis # 38 359 4 305 325 79 24.0 1e-14 MHKRWLLLMPLVILLMGCSLTTKTTQKSTQSQYGRFNGVTLDVSRHHYRVATLVKFIKLV STNHGQFIQLHLSDDKDFAIENQVVGQTRDRAVEQGGIWRNKKTHQAFYSRQQIHFLVNN AKKYNVTLIPEIDTPAHVTGLVNTLKAAGQSKLVKALSWHSDSYGDELHLSKASIKFVEK VDTEVAADFAGQKDARFHLGGDEFTDKLTKNSAYINYLNATSATIQKLGFIPEAWNDGFL NSSLTALNHHIQVTYWNWTADQYGKLGAARRKAWSSMPNLIRHHFKVFNYNDYYLYFNIS KKNLSKSNVSYMSSDMKRYWKPTLWHNDDATHLKSLKGIVGSSVSFWADSAGNVSDQQIY QAGKSFIKNFLVLTRKSL >gi|238617817|gb|GG669604.1| GENE 150 154161 - 155054 572 297 aa, chain + ## HITS:1 COG:CAC0366 KEGG:ns NR:ns ## COG: CAC0366 COG0679 # Protein_GI_number: 15893657 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Clostridium acetobutylicum # 1 297 10 301 301 103 27.0 5e-22 MFVLMLVGVLINKLGFMQAQTSNDLTNILLYIVSPCLIIGAFEQHYSASRMQQLMLVCVG IFIFYIIEIFISKIAFGRTSNINLRRITQYGSIYSNAGFMGVPLTSALFGNNGVFFAVAS LAGFNIFSWTHGVSLFKTGKKTTDRWQNFREIILNPNIVAIFVGLLFFVTSFQLPGPANE VVKYISSINTPLSMIVIGNSLGNIKINRQLVDWHLWLALFFRNVLFPMIAIMVLQVLTVS GVALYTTVLMAACPAAGLVVLFTLQAYGDTSPAVALMSLSTILSLVTIPLVFALMKI >gi|238617817|gb|GG669604.1| GENE 151 155159 - 156451 902 430 aa, chain - ## HITS:1 COG:BH1762 KEGG:ns NR:ns ## COG: BH1762 COG3048 # Protein_GI_number: 15614325 # Func_class: E Amino acid transport and metabolism # Function: D-serine dehydratase # Organism: Bacillus halodurans # 11 429 11 441 442 429 48.0 1e-120 MDDTSLITEYPQVKDLMAEQPIFWRNPDYGQQTELPFSKADIFDAVARWERFAPYLATAF PETAGMNGIIESPLIKLDQMQDSWNKMYYQNLTGKLFLKADSQLPISGSIKSRGGIYEVL KFAEHVAMTQSDLVYMDDYRVLATDRYRRIFSNYGVIVASTGNLALSVGIVAATFGFKTT VYMSHDARQWKKDKLRANGVTVKEFNTDFSHVIPQARKDASLDPNIHFVDDEGSSDLFLG YAVAAVRLQNQLKKQHISVDRKHPVLVYLPAGVGGSPSGVAFGLKTIIGPYIHAVFCEPT HVPSVTLGMMTGLNNQISVYDIGLDGLTAADGLAVGRPSRLAGKVMRTLLFGSVTFQDDE IYRNVAQLMDSQQITVEPSAAAGFTAIAPVINNVPAFNSENATHIVWATGGNMMPGSERR ANYNRGESLL >gi|238617817|gb|GG669604.1| GENE 152 156729 - 157406 543 225 aa, chain - ## HITS:1 COG:Cgl1420 KEGG:ns NR:ns ## COG: Cgl1420 COG1131 # Protein_GI_number: 19552670 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Corynebacterium glutamicum # 1 219 7 239 247 80 27.0 2e-15 MEIKDFTYGLSSGRSLFQSLNADFLDDKVNVLLGPNGVGKTTLLDFISTVNKREPTYFHG FPNFARIAYQPQSVPFIYEATVFQTMKMVMGVSGFKGKFRHTDLPAELKTIADIKYGELS GGQRRLVMIDAISRLDRELYLFDEPESGLDPKTAKQVMQKIQGINQRGKKVIMTSHQFQN INNDDYHLLFLKAGQIQFSGSPSEFLKKEGATSLVDAYIKQDQLL >gi|238617817|gb|GG669604.1| GENE 153 157418 - 158089 352 223 aa, chain - ## HITS:1 COG:no KEGG:LEUM_0913 NR:ns ## KEGG: LEUM_0913 # Name: not_defined # Def: hypothetical protein # Organism: L.mesenteroides # Pathway: not_defined # 1 223 27 252 253 63 25.0 5e-09 MFPAAYFLVMSWNDFAAGRTTSNTDMVNNLFGFWSYIMIVGVLNQITITMFQMRENNFLK MYTFISGDKRLIYYANLIPQMVILQIEVALFDLLAIIIYRPSTRVLSLIGVCWLLNFVLI PIISFFTSIILVLPIKSKTLTIYLTGYIFATLSLGAVYFKSPVLNTMVTIINPVDFQQNT YSLFVYHPHVVFIVLLLTIVGVAYIILGNVIISKMSLASRTNR >gi|238617817|gb|GG669604.1| GENE 154 157980 - 158186 86 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYDQNPKRLLTISVFDVVRPAAKSFQDITRKYAAGNMSVYKKTTLSSNASRSSNSIRLTN LRNTCTTS >gi|238617817|gb|GG669604.1| GENE 155 158206 - 158391 74 61 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFQVKIRVLTVGGPDLGWQVTLLKQLKNKTNLIGNDEKPFLFCLIHLSYDNCHLAIILTT F >gi|238617817|gb|GG669604.1| GENE 156 158306 - 159028 590 240 aa, chain - ## HITS:1 COG:SA1303 KEGG:ns NR:ns ## COG: SA1303 COG2226 # Protein_GI_number: 15927052 # Func_class: H Coenzyme transport and metabolism # Function: Methylase involved in ubiquinone/menaquinone biosynthesis # Organism: Staphylococcus aureus N315 # 65 196 36 156 241 77 36.0 3e-14 MKKVHYGLDAPLVPISYLVIGLGILINWVFFHQYAAAGFVLLYALLLIAGGLIFFHTSFR GKFIIWDKILAKTDISDDATVLDLGCGHGAVLIALSKLLGPFGKAVGVDLWKNADQSHNS LEETKRNLEIAKVADHTELVTADMAKLPFEDDRFDLVTSSFAFHNIKPNKKRFEALSEAH RVLKPGGKLIIVDTGHHKTQYINFLKKSSEFSDVSSENTGFNGWWTGPWMASYVIEATKK >gi|238617817|gb|GG669604.1| GENE 157 160903 - 161646 246 247 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 7 242 4 238 242 99 29 4e-19 MARFDNKVAIVTGGASGIGLETVKLFLNEGAKVVIGDFSDKGDDVVAGLNAGGNALFVKT NVTNEDDVKNLINKTVDAFGHLDIMFANAGIANDANITELPLDKWQNTININLTGVFLSD KYALEQMLKQGTGGAIVNAGSIHSLVGLPNVTAYGAAKGGVKILTQTLAATYAKQGIRVN AIAPGYIDTPLLSKINPGLKEKLAQLHPLGRLGKPEEIAKAVAFLASDDASFVIGATLVA DGGYTSV >gi|238617817|gb|GG669604.1| GENE 158 161952 - 162809 592 285 aa, chain + ## HITS:1 COG:CC3759 KEGG:ns NR:ns ## COG: CC3759 COG0604 # Protein_GI_number: 16127989 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Caulobacter vibrioides # 4 285 37 321 321 135 33.0 7e-32 MSYIGLNFADIYRRKGTYHIEKRVSSPYIDGYEGLGMVIAVGKKVTKHQLGEKVFFVDVP FANAELVAVPEDHAIEVPSDLDNKVIACAGLQGLTADFLAHDLGRNRPGQNVFIHGISGG VGQILSQMLTADGINVYGVTSTKAKQKIALNQGAKAVFLRTDPWLQNWLERFDTVYDGVG ITLEQSIELLKHRGNLVFFGMAGGNPPRVDLVTLLSQSKSILTGDLWDYLTDYWERIARS KRLFNYFTDEKIKVSEPTVFPLKDGILAHKLLESGNNVGKILLKP >gi|238617817|gb|GG669604.1| GENE 159 163142 - 163411 222 89 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508003|ref|ZP_03938052.1| ## NR: gi|227508003|ref|ZP_03938052.1| hypothetical protein HMPREF0496_0166 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0166 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 89 1 89 89 95 100.0 1e-18 MAAAIAHLLSKDISITLIVGLFLSAFITLTSLMISSRLLSLDTLLLGLLGISVFTLANGY HLYGRPHWSHHLIRLVVHIAIFVIALMTW >gi|238617817|gb|GG669604.1| GENE 160 163505 - 163909 207 134 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508004|ref|ZP_03938053.1| ## NR: gi|227508004|ref|ZP_03938053.1| hypothetical protein HMPREF0496_0167 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0167 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 134 1 134 134 207 100.0 2e-52 MGNFKSFDERSFLLKIQWRYGLINNAYLLVTIATGSLIYPLSDKGLWFLLTILILFIISW LTYSLIFQRSYLRQHPEDKASHHQLRGLGMIMTVIVTLLALLLMLTTNASTLTFCWIIFT LPFIRDCLSVLKTD >gi|238617817|gb|GG669604.1| GENE 161 163949 - 164335 261 128 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508005|ref|ZP_03938054.1| ## NR: gi|227508005|ref|ZP_03938054.1| hypothetical protein HMPREF0496_0168 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0168 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 128 1 128 128 226 100.0 4e-58 MKIEWRYSLVNNLPLIALWLTFLAFNGLSPRGWDRVSVPLVVLGGFWLVYYLLFERSYFK RHPEQRPGNHVISGLGWIMTFLIVMIAVIVLLKFNNSMIASPAILLGGFALISLIRDSLS VKKLSVEK >gi|238617817|gb|GG669604.1| GENE 162 164405 - 164953 505 182 aa, chain - ## HITS:1 COG:FN2073 KEGG:ns NR:ns ## COG: FN2073 COG0503 # Protein_GI_number: 19705363 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Fusobacterium nucleatum # 3 179 2 177 177 162 53.0 3e-40 MQQTYELTIGKLKRTLPIIPINETTAIASFVLLGDSELAHYAAAKLADKISEPFDCIVTL ESKGIPLAEELSRVSDHPKFIVLRKSVKAYMASPLEVSVDSITTASQQNLVLDGHDADYL RGKRVVLVDDVISTGGSLEAAEKLLKKAGATILVKCAILAEGDAAKRDDILYLEKLPLFQ RI >gi|238617817|gb|GG669604.1| GENE 163 164957 - 166033 1126 358 aa, chain - ## HITS:1 COG:FN2072 KEGG:ns NR:ns ## COG: FN2072 COG2252 # Protein_GI_number: 19705362 # Func_class: R General function prediction only # Function: Permeases # Organism: Fusobacterium nucleatum # 6 355 5 355 355 233 49.0 3e-61 MHWLADFLAAIGVVLNGIPQGIMAMTLGFAVFPTTFSFVFASAVNGAFGSVAPISFQAES LALTGNLGETTRERTSIIFGGSLIMAVIGVTGTLTKIVDVLGSSIMAGMMAGVGIMLAKI AVNMARKERVAGLSSIAIAILTYLFTKDLVWTIALSVIGSSLAAVFGIHYRAELPANVVE RRFRFLKPILNPRVVRGALSLACLNVGANISYGLITGQMTGIKPNPVNLNLLTGTQAFAD MGTSLLGGAPVETIISATASAPEPVIAGVMMMLIMAVILFAGWLPKIGKYVPAASIAGFL LILGAVVIFPENAAAAMQGSDSVIAALTLVVTAIIDPFAGLMTGAVLKFVLPLIGLGV >gi|238617817|gb|GG669604.1| GENE 164 166310 - 167176 598 288 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0637 NR:ns ## KEGG: Lbuc_0637 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 288 1 288 288 445 76.0 1e-123 MKEYRNKYFDGERPLFAEHDANIIGTTFGKGESPLKESRNINLKDVIFKWKYPLWYTSHA KVDHTILEKIAHAGIWYTHDIEMTNCSIQATKTFRRSSHIKLVDDHFSNAAETLWNCDHI TIDHVQANGSYFGMNSSDIYIDHLDLIGNYCFDGAKNVEVHHSTLVSKDAFWNCENVTVY DSVINGEYLGWNTKNLTLINCTIESDQGLCYIDHLTMRNCRLMETDLAFEYCSNIDAEIN STIVSVKNPISGKIHAHSIGEIIMDPTKIDPSKTTITTDTKITKRKSA >gi|238617817|gb|GG669604.1| GENE 165 167176 - 168348 746 390 aa, chain + ## HITS:1 COG:CAC2970 KEGG:ns NR:ns ## COG: CAC2970 COG1168 # Protein_GI_number: 15896223 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Clostridium acetobutylicum # 1 384 1 382 384 304 36.0 2e-82 MYDFKSIIPRRNTDSVKWDVKPNELPMWVADMDFKAAPEIIDAMQKKVAFGIFGYEEPHA DYFNAVADWYATEHHARPKTAWMLFCTGVVPSISSTVRRVSNVGDNVVVQAPVYNIFYNS IINNGRHILSSDLLYDSANHQYSINWQDLEAKLAEPLSTMMILCNPHNPVGKVWSRDELI KISRLCMKYHVTLFSDEIHGDLVCGSPEYTPIFSLPDDLIQNTIVSVSPSKTFNVAALHA ATLIVPNEGLRNIVNRGINTDELGEPNLLAIPGTIAAYTKGHQWLAELKQQLTRNRDIFT NYCEQFIPQIKVIASNATYLVWIDCSTITRDSSQLEDFIRQDTGLYISAGSVYGGNGNQF LRVNIACPETTLQDGLKRLKKGIETYINQK >gi|238617817|gb|GG669604.1| GENE 166 168842 - 171091 1785 749 aa, chain + ## HITS:1 COG:all4035 KEGG:ns NR:ns ## COG: all4035 COG1372 # Protein_GI_number: 17231527 # Func_class: L Replication, recombination and repair # Function: Intein/homing endonuclease # Organism: Nostoc sp. PCC 7120 # 37 327 27 275 1172 84 26.0 5e-16 MQAMKLSSVSLSDEFINQIKNEVTPHWGELGWVTYKRTYARWIPEKQRTENWDETVKRVV EGNINLDPRLHQNNVDPQVISELTDEAKKLYKLIYGLAATPSGRNLWISGTPYEARNGDA LNNCWFIAVRPQPYGDSHIVPEYLKKDQPAVSMPYSFMFDQLMKGGGVGFSVTKENVHKI PLVDNKVNLTVVIDKDSESYADSLKMGAVDKDDYFKNHSITDAAYYRLPDTREGWVLSNA HLIDLHFKSTNPKNQQNLVLDMSDIRPKGAKIKGFGGTASGPMPLIEMLFDINGVLNNRA RRHLSSVDMTDIGNMIGKTVVAGNVRRSAELALGSADDEDFITMKQDKEKLYHHRWASNN SVAVDSQFSNYGPIADSIRHNGEPGIVNLELSKNYGRKIDGIQKDIDPNVEGTNPCGEIS LSNGEPCNLFEVFPYVASQQNWNLGEAFTLGTRFSKRVTFSPYDWEVSRKAINKNRRIGI SMSGIQDWILSELGNRVVTGYQDAKDPETGETIKKPIYDQRAIDKVDGLYKAVVKADKDY SDELGCNTSIKHTTVKPSGTVAKLAGVSEGMHFHYAPYLIQRIRFQDSDPLLPALKACGY HVEKDIYSKNTMVAEFPIRAAHADSKKFASAGNVSIAEQFATQAFLQTYWSDNAVSCTVT FQPEEGDQIAPLMHQYRFTTKSTSLLPYVGNEFKQAPKEPIDTKTYEKKVMQIHGDVQRV FNQLNDNHDQKGAEIIGQTDCEGGACPIK >gi|238617817|gb|GG669604.1| GENE 167 171322 - 171597 84 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508011|ref|ZP_03938060.1| ## NR: gi|227508011|ref|ZP_03938060.1| hypothetical protein HMPREF0496_0174 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0519_0933 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0519_0933 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0496_0174 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 91 1 91 91 132 100.0 8e-30 MHPFKKSEKEREDFLRNIRFIDRRDFQRFEPDPNEEPLKELVRIKRVRREYHHEIRREKG EMRILHLKLFLLGHEGFIKFIRHLITGRSLP >gi|238617817|gb|GG669604.1| GENE 168 171693 - 172229 595 178 aa, chain + ## HITS:1 COG:BS_yvqK KEGG:ns NR:ns ## COG: BS_yvqK COG2096 # Protein_GI_number: 16080368 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 2 170 1 172 193 119 41.0 3e-27 MVKIYTKVGDHGQTKQVTGKMVPKYDLQIEALGAIDELDSWVGYVISILSPKAQSLAPKL KTIQRNLYELQADITVKRHHNISTSDTKQLETEIDDIMAKLPIIKAFILPGGNPSGAALQ YARALARKAERLVVELNDKKQPLNGDILEYLNRLSDYLFALARYANLLEGYDEEKSKL >gi|238617817|gb|GG669604.1| GENE 169 172373 - 172933 437 186 aa, chain + ## HITS:1 COG:lin0947 KEGG:ns NR:ns ## COG: lin0947 COG2186 # Protein_GI_number: 16800016 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 182 40 220 229 85 29.0 6e-17 MARFNVGRSTVREAMKVLVNLGLIEVKQGKGTTIINDTLPDQTISSTLKNAPVIEAYEAR KALEVGIVDLACHNRNATDLKAMNYYLEIRSAAAKLHSLDAYRHADEQFHEAITEATHNS VITDIYTDFWNSFKDRFGAGFTKTELYHEQSIIHQNILEAIKQQDPHQAVYWIEKNITLL EQTVND >gi|238617817|gb|GG669604.1| GENE 170 173003 - 174202 799 399 aa, chain + ## HITS:1 COG:lin0946 KEGG:ns NR:ns ## COG: lin0946 COG2807 # Protein_GI_number: 16800015 # Func_class: P Inorganic ion transport and metabolism # Function: Cyanate permease # Organism: Listeria innocua # 3 386 12 392 405 191 34.0 2e-48 MNTKRQGINFTFEVFLLAANLRLAIIGIPPIVTKIQSYFQLTTAQTGVLTTIPLLCFGFL SATTAPIIRKLGTKRTIEYALLMLAIANLLRTYVNWGMFLGTIFVGAGITMLNVSLPALI VERHPEQSTKLNGVYTASINLLSAIVGGIAVPVANAIGWQFTVQLFSIPALIAFLGTLML PHQATRPRKRTATDHQEVTGKAAATPIWKRGHVWLLAIFMGLQSLIFYTIVAWLPSVLTS HGLSATTAGLLFSIFQIIGAPFAYLVPRATTKASNLKLLMVSLLIGYLSGIGILIMFNAT WLLILACIIVGITTASIFTLSLSMITTISTTPQEAGSVGGIVQSIGYLIASVGPTMFGVI ESTLGNWSQTLIILITISIINILVGFVLIKIVQKNHFVY >gi|238617817|gb|GG669604.1| GENE 171 174318 - 175745 898 475 aa, chain + ## HITS:1 COG:L184516 KEGG:ns NR:ns ## COG: L184516 COG0477 # Protein_GI_number: 15672362 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 16 460 10 458 467 283 38.0 7e-76 MTAKNKSLKIWWIFTAISIFSFMSTLTSSVVNIAMPVMSRAMDVTTTQINWVASSYLVMT CMLLLPFGKLGDLYGKVSVFKIGTVIFTISSLLCGINFGFTFLLICRGFQAIGASMTLSN NAGIITEIFPPKKRGLALGSFSSVVALGGVVGPGLGGLILAHLSWNYIFWINIPLGILAI IIGQLFLPKTANRQNQQIDYLGLVSFGIMMGTLFIGLLWGQEIGFASLPFILLMIVTIIL LTVFIFTERRFKTPAVNLDLFKNVNFSLNLIATILVYALNFVVNIIEPLYLQENRLISPE VTGLIMMSFPIIQIIIAPLAGTLSDHMGDWQVYIAGIIILIIGQVGLATVSHETSISTLC IWLGFIGLGNGIFQAPNNVMVMEAVPKSQLGVTSGLLGLSRNIGMTVGTIFSSVLLFAGI NHALGYTVHNYPTHAPTAFITGMQLTFIATAIVFFIFLIGNVTARIVHKQRPFTA >gi|238617817|gb|GG669604.1| GENE 172 175939 - 176205 224 88 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508016|ref|ZP_03938065.1| ## NR: gi|227508016|ref|ZP_03938065.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 88 49 136 136 160 100.0 4e-38 MHPKIIELQQRLKQLGFNDVTLLDVLHDDLSAIGATKIRIYPHFDQHIQLDPQLATKLRH WEIVKNQTITRLTNQEALLIENDRVIKL >gi|238617817|gb|GG669604.1| GENE 173 176213 - 176659 450 148 aa, chain - ## HITS:1 COG:CAC0160 KEGG:ns NR:ns ## COG: CAC0160 COG0454 # Protein_GI_number: 15893455 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 1 148 2 149 149 154 53.0 5e-38 MDIRKATLADIKIISQIRKQQLIDEGIEPDVSIDSQLASFFKKTIAEGSLIEYLILDGQQ IIATAAIYFQQFPPTYSNQSGVKGYITNMYTADSYRGKGLATRLLHQLVNEAKKKGVTKL WLGTSKLGRPVYEKFGFEQTGEWLNMDI >gi|238617817|gb|GG669604.1| GENE 174 176916 - 177371 430 151 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2216 NR:ns ## KEGG: Lbuc_2216 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 151 1 155 155 89 36.0 3e-17 MTLTKSVLLVAATFGVGVTVLTSGNAQAATEVNPIPQVLRGSWYGKYQHVPVMYKLTKYT LQEGATVDGHWKSKPMTFHVKTAKSAKNKYSLFTVSKQANKHGYWDLKLLESKESLYFKP VKHHGKSALYKYHIDREYGKPRLDVGYFYKK >gi|238617817|gb|GG669604.1| GENE 175 177615 - 178625 978 336 aa, chain - ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 1 334 1 331 333 419 64.0 1e-117 MVKIGINGFGRIGRLALRRILEINDPDIEVTAINDLTTPSMLAYLFKYDSTHGTLPYDVS STDDSIIVNGHEFHVYAERDASQIPWAKDDGVELVLECTGFYTSKEKSQAHLDAGVKKVL ISAPAGPIKTIVYNVNDDTLDASDQIVSAGSCTTNALAPMAYYLNKEFGIEVGTMTTIHA FTSSQMILDGPKGKKARPNRTASANTIPHSTGAAKAIGLVIPELDGHLNGHAQRVAVVDG SVCELVSVLKTKDVTADQVNEAIKPYTKDNPAFGWNEDEIVSSDIIGDTHGAVYDPTQTE VTTNGEFQVVKTATWYDNEYGFVANMIRTAKAFGDK >gi|238617817|gb|GG669604.1| GENE 176 178883 - 180241 1239 452 aa, chain - ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 1 446 1 443 454 392 47.0 1e-109 MKVIVVGSSHGGYEAVRELLATHPDAEIQWYEKGDFVSFLSCGMQLYLEGVVKDVNNVRY ATAEGMRAQGVHVFVQQEIASISPDKHEVHVKNLADGSERDESYDKLILSVGAVPVALPI PGNDLQNVYYMRGRDWAMKLKRATVEPTIKNVVVIGSGYIGIEAAEVFAKAGKNVTVVDI LPRLLSVYLDKEFTSVLTDEMQANGIHAATGETVKEIVGKDGKVTKVVTDQAEYPAELVV EAVGVKPNTKWLADTLDLNSNGTIKTDDYQRTSQPDIFAVGDATKIKFAPTDKPAQIALA TNGRRQGRYAVKNLTDAKNPTPAVSGSSALSVFDYHFASTGIKEGTADKFGVETQSVYVE DTYRPPFVPADQNPKVQFKLTFDPKDGRVLGAQIMSKADVTANMNVISLAIQQKLTVNDL AYADFFFQPGFDRPWNIINVAAQKAQRELDQK >gi|238617817|gb|GG669604.1| GENE 177 180552 - 180776 255 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508021|ref|ZP_03938070.1| ## NR: gi|227508021|ref|ZP_03938070.1| hypothetical protein HMPREF0496_0184 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0519_0943 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0519_0943 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0496_0184 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 74 1 74 74 112 100.0 1e-23 MLKQLISRFVNSLLLSAVSLGTVLFIVKGIVDLSYTGTYAWAQYTTYFVTGMIGVSIIMF AFEMIEILASRNRR >gi|238617817|gb|GG669604.1| GENE 178 180689 - 180874 110 61 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MILGHNDRLDSRMFLVKDKGYLGGLNAQKDVVGHLRFLEAKISIISNANMMILTPIIPVT K >gi|238617817|gb|GG669604.1| GENE 179 180927 - 181331 450 134 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1915 NR:ns ## KEGG: Lbuc_1915 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 134 1 134 134 184 64.0 1e-45 MDAIRFYSRTGNTEKVANLLSEQLNVKAESIDSPISEPVDRLFLGGGVYNMSADKRLKAY AADLDPATVKEVFLFGTSGSVFTIEKQLTKVLKKKRIPVSDEHLFLHGVMPKMGNISGHQ KTEIEEFAKGAVTQ >gi|238617817|gb|GG669604.1| GENE 180 181706 - 183106 1601 466 aa, chain - ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 9 461 53 503 506 484 57.0 1e-136 MAKYVFQSTDIKELKDQYDLVVIGSGSTGMTAALQAHELGLNPVIFEKMANFGGNTNRAS SGMNAAETNVQLKHHIVDSYEEFYEDTYRGGGELNNKEMLQYFTTHGALAIDWLADHGIH LDDVTITGGMKIKRTHRPGSMAPIGNFLVTELLKLIEKEEIPVFNNVHVDKLEETDKAIS AVSVTLGDGTQKQIKADAVVLATGGFGASKDIIQKYRPDLVGYNTTNQPGATGDGIKLAQ SVGAGLVDMDQIQVHPTVQQDTDHAFLIGEATRGEGAILVNGEGKRFVNELDTRKNVTNA INQLPEKSAYLILDTGIRAHVKAIEFYDHIGLVVHGDSIDELAKTINVDAANLGKTVSNW NGYVADKNDTEFGRSTGMDRDISQAPFYAIHIAPAVHYTMGGVKINRKAQVLTDNGHPIK GLFAGGEVAGGLHGNNRIGGNSIAETVIFGRQAGEQSYKYVTNLKH >gi|238617817|gb|GG669604.1| GENE 181 183326 - 184723 1351 465 aa, chain - ## HITS:1 COG:lin2328 KEGG:ns NR:ns ## COG: lin2328 COG0114 # Protein_GI_number: 16801392 # Func_class: C Energy production and conversion # Function: Fumarase # Organism: Listeria innocua # 7 460 3 455 455 472 55.0 1e-133 MSDKDVRVEEDTIGPVEIPASALWGPQTERSRNNFPTGQFMPLPIIKALLQIKKAAAQSN AEEGALNQEKGDLIVKAIDSLLSLSDEDLRKDFPLKVYQTGSGTQTNMNVNEVVAHRAAQ IDSSVDILPNDDVNHGQSSNDIFPTAMNITASEAIQKLEESAQHLIDELKIKQETYWRTV KIGRTHLQDATPLTFGQEVSGWVSMVEHDLSYLKGLDGTLLELAMGGTAVGTGLNAAPHF ADDIAERMSKVYGLKFTADTNKFDGLAAHSGLNVVHGAMKTLAADLMKIANDVRFLASGP RAGYDELNIPANEPGSSIMPGKVNPTQAEAVTMAAVRVVGNDVVVDMAASQGNFEMNVYK PVLIDAFLESADLLAGTMTGFADKMIHGLTVNADRMTELVDQSLMTVTALSPHIGYHDSA KIAQAADKAGTTLREAAIKSGKVTAEQFDKWVDPLKMTNIDSARS >gi|238617817|gb|GG669604.1| GENE 182 185281 - 187041 1712 586 aa, chain + ## HITS:1 COG:L0199 KEGG:ns NR:ns ## COG: L0199 COG0028 # Protein_GI_number: 15674026 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Lactococcus lactis # 4 577 3 567 567 573 50.0 1e-163 MVEKISGSDAVLKVLEQWGVNHIYGLPGGSFDSTMNAIHNQKDKINYVQVRHEEAGAIAA SATAKLTGKVGVCFGSAGPGAVHLLNGLYDAKSDGVPVVALVAQVPTSNMNMDFFQAMDE EPIFDDVAVWNRTAMTADALPRMTDEAIRQAYMKHGVAVLTIPKDLGWAQIDNTYEPNLK SHTAPAYPDPRPEDVSEAVKLIKDAKSPMIYFGLGAKDAADELKAVSEKFKMPLVSSVLA KGIIDDDYPAYLGSTGRVAPKPGAEIGFSTDLILWVGNDVPFSVFLFNKKAKVIQIDIES EKLGKRRHNDVSMLTDSKKALKAILDAGEERKPSAFYQAALADKTNWLDWQNSFKDATEK PVRPEPIFDVINKTASDKAVFAVDVGNVNINFERLISMHGDQKWATSGIYATMGFALPTS IAAKMEYPDRDVYSLSGDGGFAMLMEEVMTQVKYGLHVVNVIFSNETLGYIEAEQTDDTH QPLSGVDLPDTNWAEVAEGMGAVSYTVRTKDDMKKALEDAGSTDKPVVIDVKLTHDMPLT TQHMFIDPAWQDQKKIDAFVRKYQAQDLKPFSYFLKEAQEGQLQTN >gi|238617817|gb|GG669604.1| GENE 183 187330 - 188490 480 386 aa, chain - ## HITS:1 COG:MA0258 KEGG:ns NR:ns ## COG: MA0258 COG0675 # Protein_GI_number: 20089156 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Methanosarcina acetivorans str.C2A # 4 377 1 357 370 194 32.0 3e-49 MTTVVKGVKLRLYPNQAQINQLWQLFGNDRFVWNQMLAMANKRYENNPKSQFVGEYDMNY LLKRFKQEYPFLKASDSTSLFVVNHNLALAFKNLFQHRSGHPRFKSRHSAKQAYTGQSTC VVEAKRRLRLPKLGSIRTSKTNQLTDAKIKRYTISHDATGRYYLSLQVETEVHDLPKTHQ MVGLDMGVADLAITSNGVKYGTFNARWLEKQATLWQAKFSRRKRQATVAMRQWNHHHKLS KMALNDYQNWQRARMVKARYQAKIANQRKDYLHKLTTDLVRNYDVIVIEDLKTKNLMRNH HLAKSIANASWYQFRTMLEYKCAWYGKQLMMVNAKNTSRICSACGQNDGPKPLDIREWTC SECRTHHDRDINAAVNILNCGLKAIG >gi|238617817|gb|GG669604.1| GENE 184 189087 - 189920 440 277 aa, chain + ## HITS:1 COG:lin1366 KEGG:ns NR:ns ## COG: lin1366 COG0196 # Protein_GI_number: 16800434 # Func_class: H Coenzyme transport and metabolism # Function: FAD synthase # Organism: Listeria innocua # 21 232 21 236 314 166 40.0 5e-41 MQVIYLDSRQQSFIPSKKPIVLALGFFDGVHKGHQFVIQTAGKIANQRGLPLAVMTFNRH ASRIFHHDSSSTFRYLTTLKQKAELIEKLHADILYVVDFNQHFAGLSPKTFIEKYVIGLN AKIVVAGFDYTFGQGGTTTIDSMAAISNHRIQTVTVRELDSQRLKIGSSRIRKLIGQGRI KEANKLLGHPYETTGKLIHAQIDGLSIVNPSSRLQQLPQTGSYLCDVTVSKEKQKIIVRV RQPKKGHATAVIYINRKAFHNLPHISSLPVSIKWLSE >gi|238617817|gb|GG669604.1| GENE 185 190243 - 190437 232 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508028|ref|ZP_03938077.1| ## NR: gi|227508028|ref|ZP_03938077.1| hypothetical protein HMPREF0496_0191 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0191 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 64 1 64 64 90 100.0 4e-17 MFNKYFFKDAHFWIGLIIAYLNRNIFIHVSILNPLWIIDLLLFIAGVYLVISSLLNKKKY KFVK >gi|238617817|gb|GG669604.1| GENE 186 190805 - 191074 204 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227511050|ref|ZP_03941099.1| ## NR: gi|227511050|ref|ZP_03941099.1| ABC superfamily ATP binding cassette transporter, permease protein [Lactobacillus buchneri ATCC 11577] ABC superfamily ATP binding cassette transporter, permease protein [Lactobacillus buchneri ATCC 11577] # 1 89 166 254 254 140 96.0 3e-32 MTVVVTGSTVSANGMKGLLINGVFYALGMFSTVFTGFKKINPFSLINQNMQFLQGKQSLG EYGVALAITVILMLISLAISLILFNRKRV >gi|238617817|gb|GG669604.1| GENE 187 192549 - 193628 377 359 aa, chain + ## HITS:1 COG:SA2489 KEGG:ns NR:ns ## COG: SA2489 COG3376 # Protein_GI_number: 15928283 # Func_class: P Inorganic ion transport and metabolism # Function: High-affinity nickel permease # Organism: Staphylococcus aureus N315 # 40 357 12 335 338 230 39.0 4e-60 MNKHLSINFLNSSRLSISKKEALFVEKVPTQQYSVIRDSIKYGSYIFLLFATGWLLVILY LGKYPSLLAMAFLSFTFGLQHAFDVDHITTIDNITRKLINDGKNTHGVGFFFSLGHSLVV MLMTLITIFFVHWSKERLPHFQHIGNLVGPIFSGTVLIVLGLINLLIPIQTCHQFNQIRQ GHTDQPADQMTHWTLGIFNRALQLIQHSWQTLIVGFLFGLGFDTATQISVLATSAVATNN GVPWLAVISFPLLFTAGMCLMDTSDGLFMSTAYSWLFSSPFQKVYYNIVLTGLSVTTAFF VGIVEFVQVAGRQFHLHNQLVQWCTRLNFQHLGIILVILFIITWSLALVVWRRLNHQIK >gi|238617817|gb|GG669604.1| GENE 188 193712 - 194530 460 272 aa, chain - ## HITS:1 COG:CAC1588 KEGG:ns NR:ns ## COG: CAC1588 COG0583 # Protein_GI_number: 15894866 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 2 271 22 290 293 132 27.0 5e-31 MAKKYRVSQPTVSAAIKRLEDEFGSQLLVRGNPHRTIALTHTGEQLLGHAQEILYHYQLA KTEIKNSEKRRLVVGMPPIIETNYFPKIAQRLSPEDLTSIQTVEEGSISALNDLKNGTLD ISFLGYIGQLTDQMIDVHQIDQQPFSILVATNSRLAKQQRVNFADLKNQNFILFKDSFVH DRVFRQLSNTNHVRPKVIFRTNAAQSIVNMVAQGIGIGFLTNAIKIKDPNVVRLRLDDPL QPVFKIGLALRRGMVFSEAQEKIVAILKSAVK >gi|238617817|gb|GG669604.1| GENE 189 194724 - 196346 1354 540 aa, chain + ## HITS:1 COG:L121483 KEGG:ns NR:ns ## COG: L121483 COG0281 # Protein_GI_number: 15672882 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Lactococcus lactis # 1 540 1 540 540 676 61.0 0 MSTQTILSDPFKNKGTAFTKEERQQLGLTGMLPPRIQTLDQQVAQVYAQYQEKSSSLEKR IFLMSIFNENRVLFYKVFSQHVAEFMPIVYDPTIATTVENYSHLFVQPQNAAFLSIDDPD TIEESLKNAAAGRDIRLLVVTDGEGILGIGDWGTQGVDIAVGKLMVYTAAAGIDPRQVLP VVLDVGTNNQQLLHDPMYLGNQHPRIQGVKYDAFVNRFVKAVENNFPHVYLHFEDFGRDN AADILNRFKDNNLVFNDDIQGTGIIVLAGILGALNISKQKLIDQRYLCFGAGTAGAGITQ RIFEEMVNLGLSPQEARKHFYMVDKQGLLFDDTPDLTPEQKPFARSRSEFNNADDLTDLL STVKAVHPTIMVGTSTQAGAFTEDIVKEMAAHTERPIIFPISNPTKLIEAHADDLIKWTD GKALVATGIPSKNVDYQGVSYEIGQANNALIYPGLGLGAIASTASVLNDKMISAAAHSLG GIVDVKKPGAAVLPPVSKLYEFSETVAEAVAQSAVDQKLNQQPIKSVVKAIEATKWEPQY >gi|238617817|gb|GG669604.1| GENE 190 196413 - 196895 348 160 aa, chain - ## HITS:1 COG:no KEGG:LGG_02794 NR:ns ## KEGG: LGG_02794 # Name: not_defined # Def: GNAT family acetyltransferase # Organism: L.rhamnosus # Pathway: not_defined # 1 157 1 155 159 159 49.0 3e-38 MIISRLFSESDAQMVSNLVTTTMLTTNIKEYTREYLEKDIKERTPYFFIKLSQYAHCYVF IDKNCDEIIGYGAIGPYWDKKDESSLFNIFIRPDYQGRGIGRKLIYTLENDPFFKRAKRI EVPASITALEFYEKMGYTFKNDDSRLDDERLFHLEKYNSH >gi|238617817|gb|GG669604.1| GENE 191 196920 - 197618 546 232 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2104 NR:ns ## KEGG: Lbuc_2104 # Name: not_defined # Def: abortive infection protein # Organism: L.buchneri # Pathway: not_defined # 14 230 42 258 261 135 41.0 2e-30 MSMLFYNGTFLEQAVADLVYALLSFAIMLWALKSTKVFVHRLALTKPMIIWGIISLVTLG IVFGFGGVPQHVIMVLQAKHLLVNTLVALSAAIFEESINRGFFLSGFLAYAQYNSRSYKL TRSAIYSSILFGTFHLVNLLGGNSSAVFQQVFWAFVIGVFLAALRFTTNTLFWGMLIHFL LDWFPSASTKFDIQQASWGIILAVFTPLLVASVIYLVKADQAYQKLPAESVA >gi|238617817|gb|GG669604.1| GENE 192 197821 - 198309 224 162 aa, chain - ## HITS:1 COG:no KEGG:lp_0948 NR:ns ## KEGG: lp_0948 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum # Pathway: not_defined # 1 152 1 149 164 114 39.0 1e-24 MKPIFILIRGNSGTGKTTLAKELQSYFGYEQCLLLQQDVLRRSILHADDHKGTPAVDIIE TLVKFGFRHYPIVILEGILRKDVYGSMLRRLCKETKRKSLVYYVDIPFELSLKFNRLKIQ PFAIQQLRKWWISKDYLTSDDTKLSSEKIEDLFERMVKDINN >gi|238617817|gb|GG669604.1| GENE 193 198586 - 198765 150 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508037|ref|ZP_03938086.1| ## NR: gi|227508037|ref|ZP_03938086.1| hypothetical protein HMPREF0496_0200 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0200 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 59 1 59 59 81 100.0 2e-14 MKAPMSIRILLGILLVSVAVAFLLKLHITTVVLIIITGVIAFGYPIILSKNTHNNQDRK >gi|238617817|gb|GG669604.1| GENE 194 198771 - 199457 561 228 aa, chain + ## HITS:1 COG:SA1747 KEGG:ns NR:ns ## COG: SA1747 COG1131 # Protein_GI_number: 15927507 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Staphylococcus aureus N315 # 6 203 4 212 298 138 35.0 1e-32 MAKVLLQINHLKTVLDSFTLRDISFTATAGDIIGIIGENGSGKTSLLKSIVGIYPLSDGN IHLDTDQIGFAFDSIPFPQKLTIKELSNVLKNLLPSWQSKTFDAYVDSFNLPRNTPLEKF SKGMKMQFSVAVTLSHKASLLLFDEITSGLDPIVRNTVLEAIKNYVITNHAAVIMTTHNL DDVIKIGTRFILLDNGKIILERSINYDDNATSLEQDFVQAVKDWGNQR >gi|238617817|gb|GG669604.1| GENE 195 199454 - 200101 345 215 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508039|ref|ZP_03938088.1| ## NR: gi|227508039|ref|ZP_03938088.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 215 1 215 215 243 100.0 6e-63 MNGLILKDVYSLEKLWFKKSYILAALILLVGSTIWLKESGSIISVIFLSMLLLNSLQTLF LDDSHSNWLLFLKTLNIPLSKVILSRYTIAFIISLIATIITFATALISRLFSSVMTITQL FEFSLIVLVISVIYIFFLIPFIYLFNQNGLIIGFLTIITLTFGIFKLFSIDALTVSIVNT SGYIIFLIVLGVIILDFSVSYAISFLIMKKKSFNG >gi|238617817|gb|GG669604.1| GENE 196 200505 - 202445 1354 646 aa, chain - ## HITS:1 COG:CAC0625 KEGG:ns NR:ns ## COG: CAC0625 COG4934 # Protein_GI_number: 15893913 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted protease # Organism: Clostridium acetobutylicum # 55 641 54 619 625 272 32.0 1e-72 MIRMKGLWLSMLAISAVITGINLNNIQVSAKAKGLSNTQVNAILTKSKLYRPSKIKPNQE TTFDVFLKPKNESQYFQEALDVNTPGNSQFKHYLTPTEIGNKFGQSNSVITGWTSFLKKH GLKTIVSKNKRVIFVSGKAGSIGKLFKTNLNSAKYHHNPFQFGKVGPKFPKNLSKSLLAF GGMADHNRDNVIPNADLQLAKISPIVHRVGGYTTRFTRTYHLSSLLEKGFNGKGNAVGII SFEGIHKSNVFHFWKHEHASISPARYTVKNVQGNFFNPKMISNDSGEATMDVEYAGSVAP QANIRMYRQKSEMPTFLNTVNLFNMAYDENKVSSLSSSWGLQSNKTNALMQKKGMLPKQY LDILSLTFAQGDLQGISTFVGSGDTGAGSYYVKRITKNHAFLGYSQHSNDIITTNPWLTS CGGTTLPYFYKGAMLKKSEFGNIGNISNKNERAWGSNFIKVLQSKPELLKKDPIIRLKLT VGGGGGFSEIYATPSYQKGVPGVNTFNARKLLTKYNYPILNAPLISGTGQGRNFPDISAN ADALTPYIVYQKEKGQSPWSLGAGTSIVGPQMAGAIADLNSGRSTRMGFLNAQIYQLATT QNSPFNPLNSTTDNNNMYYTGQPGTVYNQASGLGTVNFEKLFEEYK >gi|238617817|gb|GG669604.1| GENE 197 202665 - 203495 620 276 aa, chain + ## HITS:1 COG:BS_yvcE_2 KEGG:ns NR:ns ## COG: BS_yvcE_2 COG0791 # Protein_GI_number: 16080533 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Bacillus subtilis # 141 275 3 132 133 118 48.0 1e-26 MRHCKLIFWGVGIVAFIGIGLVFAKATWSPNEVPTSVTEVKQTVAPNHIYQSYRFPYKLT ISTPKAKLYSAPAGTKGAQYLGTASDKHLQNHIKGSVRADLNHNQRAGYIKFKQGKHTYW ISAQQTQFRDLNALKGHNKPIETAISAGLKLVGHSKYDYGGGRNLTDIRHHRFDCSSFVR YCYGKAGITLGNLDSVTTFTLVTMGKPVSFNHMKRGDLFFFTNAKGQVNSHVAIYLGDHL FLHDHGQSDTGGVGITSLNAPSWRKETNGTVRRIVN >gi|238617817|gb|GG669604.1| GENE 198 203654 - 203851 187 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508042|ref|ZP_03938091.1| ## NR: gi|227508042|ref|ZP_03938091.1| hypothetical protein HMPREF0496_0205 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0497_0183 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0519_0958 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0497_0183 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0519_0958 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0496_0205 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 65 1 65 65 108 100.0 2e-22 MRKVLLVMAGIFLLIFIGIFSYDIVNHNSILVIGYNRPQGLLGWSFVLTIILFGCSFIFR PTDKK >gi|238617817|gb|GG669604.1| GENE 199 204171 - 205370 371 399 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508043|ref|ZP_03938092.1| ## NR: gi|227508043|ref|ZP_03938092.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 399 1 399 399 626 100.0 1e-178 MNKSLLAFKLECSLIGVITVIFFILSPALSITFGNLVFGILTAVLGLLITAKTIMKRPYL QVIDNLAKMLLVLTFPATLLTSICLSFSSIMTANTYVKWGILAAILAIFGVLMLPFIKII LMPQSQIGWQIASSILLMTVFFSTSLNAFQYLKIPFTLNLGSPIIWILIIGNFTIAIYLM IYWGYRLPRLKINTSVNYWWLLLAVVILLLNMGLSAGSWMRLLTNFDLTLAQNSLLIVLF TIIWTGLKEEFMFRYLFLWPLASIKRVSIESRVFWSSLISALFFGLCHAQNLTEQGVLQT CLQIFAAFGIGFLFSVIALYTGTIWISVVIHCMIDLIGFPINNGGAFSGNTSWFLVEFIL LTRIIELIVAFLLIKNKNNQRAFSETFSRLRRDESKLLK >gi|238617817|gb|GG669604.1| GENE 200 205411 - 206736 1095 441 aa, chain - ## HITS:1 COG:BH0293 KEGG:ns NR:ns ## COG: BH0293 COG0477 # Protein_GI_number: 15612856 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 32 418 31 401 418 75 21.0 2e-13 MVENKAIILLEKKSQFAPITNRQSNHQIMKDVASNFISSLSGGMFSLAMGLMLLHDTHSP LSFGLETAIVPIVGLIFLIPVGNIVDQYHHKIILVVSLIARLVGLVIFALIYPLFTGIYK LVPVAGFVVINAISTNFNTTAYSASVHELVNDQKIQLLSSLTQAASALSSVLSPAIGVAV YALIGFETFIVVEIIATFAALMLLLSMQFHYSDAVSSVKNISKTLASQLSGFKTGLQYIR HRPLIRDLILVAIVVNFLFTAITIGLPFVITAQLHAGNMPIGYIETGFSAGIFIGSIIMS IIPNNVYFSLKIVPPIIVMGACMALLGLLLATVTQPVQLTLAGAVIMFVAGSMSGVMNVS TNIRLQTTVPSHLLGRVNSTLMTSVTAIMPIGTLIYTFLFQSQLSGALVIAVSGVMMLGY VIGFLRLILKDIRGDKQFQGE >gi|238617817|gb|GG669604.1| GENE 201 206886 - 207521 630 211 aa, chain + ## HITS:1 COG:no KEGG:OEOE_0704 NR:ns ## KEGG: OEOE_0704 # Name: not_defined # Def: hypothetical protein # Organism: O.oeni # Pathway: not_defined # 1 194 1 195 195 165 52.0 1e-39 MAKNAVSKLAKLMADEKVIAILKATKGKEGLTSKEISQRVNIPTNQLYYTVKKMTDQGLL EVTQKKNIKNFQEFYYSSYPMTHHDPKLGPEDPELTKKGVNISAEWVEKHSQEVAQMILF QTQQFLSAMQTDIKNYAQNPDIDNIHAGSVHSTWKLSPENEKKLWQKIIKLINDTEEESK GQDTHDVHLLIEKWVQEPSEESQTEHKEEDL >gi|238617817|gb|GG669604.1| GENE 202 207567 - 207986 389 139 aa, chain - ## HITS:1 COG:no KEGG:LC705_02888 NR:ns ## KEGG: LC705_02888 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 134 2 136 143 115 46.0 7e-25 MNDKLFTNSVTINAKAAAARQVLTNPSQLLKWVPEINAVDQSRDSFTITRSQGALNQVEV ITVELTESTIIYHSRQGRLNYDLVFTLLESDNHLQIQEELIIDDSETKLPLKLLAPIAKH ALNVNLINLGRLIEGITMV >gi|238617817|gb|GG669604.1| GENE 203 208062 - 208886 494 274 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0261 NR:ns ## KEGG: PEPE_0261 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: P.pentosaceus # Pathway: not_defined # 1 274 1 272 274 230 45.0 4e-59 MTIKLGGILKQTRQAQHMTQKQLAEGICSQSMLSAIEKGQYTPNANLLIALCRRLKISLD DISLSSNFAIGRTRDFNQKLDRLCNQHQYQKLFDFLQKPSVLDAIETDGQTQAYYYYLGV SKWHLQQGLQDVAADFQLSLASAQPTHLSVLTRLGMMSLAMVRTQLGQLRSSEKLLAQAV SDIETAEYEENLNIVFYLAGLICFESEHYAKTANWVLRGIDFATGHDSHYMLANLYYLLA RTAEVEAQLDIHDDAQERAKIFTELFHEKPYENF >gi|238617817|gb|GG669604.1| GENE 204 208919 - 209581 561 220 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2278 NR:ns ## KEGG: Lbuc_2278 # Name: not_defined # Def: abortive infection protein # Organism: L.buchneri # Pathway: not_defined # 7 220 1 212 212 214 54.0 2e-54 MRKQWSLKTVYGNYLIFWLIWLVVQGYLKGIQTQYTTGMANDLINVVVKAVIWISLGLFW FSRTQNQLWLSKKKLYNSRFPIEFWLALVIFIGYLFMSMWIRHHGFYITTHPFTKEGGNF LSVTLAAGLIEELVFRGFFCNFLLTKYDMLTAIMIQALLFQAIHFPIYWAEELSLMGWVA NVATVLPLGIVFGWIFYRSRNLWPSTILHCVWDTAIFLFV >gi|238617817|gb|GG669604.1| GENE 205 209606 - 210082 363 158 aa, chain - ## HITS:1 COG:SP0628 KEGG:ns NR:ns ## COG: SP0628 COG0537 # Protein_GI_number: 15900535 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Streptococcus pneumoniae TIGR4 # 17 138 27 151 167 79 35.0 3e-15 MQTWQQNRIYSAINGTNPTVMARLSGGFAVMGDTQFLPGYAVLLPKREVASLNDLSLSER TEFLKDMSILGDAVLQATGALRINYDILGNTDQFLHAHVFPRYVSEPPERLGKPVWLYSP DHWSAPRYQYDPKKHGRLRAEITRYLRDHLTGNDHMPN >gi|238617817|gb|GG669604.1| GENE 206 210250 - 211500 820 416 aa, chain - ## HITS:1 COG:SA1431 KEGG:ns NR:ns ## COG: SA1431 COG3177 # Protein_GI_number: 15927183 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 20 416 15 401 406 165 30.0 2e-40 MEYQLLSIYKYNGSGPSKRDAEVEAEYQRRLNGYSTVVTDMYPVLDKKAYEQIDNYPLFF VQTNEINKLVNLITRNSRKIEEIAEKLPGVAKMSYTRKLLTSEIYYTNKIEGVKTTKEEI GTVVGQLSSKNQPDRRLASAVRLYHATLTGKTYQIKELRDFRKIYDELLRGEIGDDKQPD GKVFRNQSVHIGTSSQKIHTPPVNEQQIETKLMPLIQFMNQHEIQDLTKAVVTHFMFENS HPFNDGNGRTGRYLLSSYLASKLDHYTGLSVSSAIYADQSAYYKAFKQADNWENRADVTI FIQKIMGIISEGQMDVIVNLRQLSDQLGETYHKIQASFKDPVQRAIIYILAQSKLFSENP ETGIKDIELIKVLYAEDSKIYHKNKVQREIKLLTKNGVIAEIKRRPLQHLVDDQYL >gi|238617817|gb|GG669604.1| GENE 207 211835 - 212335 420 166 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508051|ref|ZP_03938100.1| ## NR: gi|227508051|ref|ZP_03938100.1| hypothetical protein HMPREF0496_0214 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0214 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 166 1 166 166 298 100.0 7e-80 MKHIINKESAGLSALLLTLIIVPFLSGCSGSQSKSLNKLMSSTKKAHQYSFRKYDWVKVS TANGKEVAQITNRRDVIYISNIVGDAANVDQVGLGKKYLNKAHLNYRYTFYQAKPKVAIH MSVYSDSKHAQVTNIPVIRAVHYKLSETNYQKLNHPFQYLNAVHAN >gi|238617817|gb|GG669604.1| GENE 208 212440 - 213357 315 305 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 2 297 8 311 312 125 29 4e-27 MSETILKVQKLNKSFGSKQVLHDISLNGQKGHVIGLVGANGAGKTTLMKAILGLTSAQGT ISIDGQLSSFDHHEILKRVGALIEYPSIYPFISGRDHLTLFAKGPDRKQHIQKTIKELHL TKYIDRPAKKYSLGMKQKLGIAMAMVNEPELVILDEPMNGLDPQANKELRLLIKAKSQSG TTFLISSHILSELQKVADELLILDHGRIIQETTMKDLLAASDHYLILSTSNDPLARKVLT QAGYHLVSDSELKIHVAAKVNLEPILKALDHQKITVLDIQHQDGGLEESVLKLLNEDQLE TEGQK >gi|238617817|gb|GG669604.1| GENE 209 213354 - 214133 470 259 aa, chain + ## HITS:1 COG:SA2303 KEGG:ns NR:ns ## COG: SA2303 COG1277 # Protein_GI_number: 15928094 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Staphylococcus aureus N315 # 1 259 1 256 256 119 32.0 5e-27 MKTLLWQEGFKLLRKKSTYWVTIVLAGLVFGSALLSRMYPKTFPAQLFFTSSFGATTWVV FVMIAACATSLSMEFQYGTIKELIYQQYSRGTILISKWLIMLAYSIYLYAMTGVVALLGK IVLVNDKFSLGDTGTYTYHLTFLEQWLATIGSSFITLWFILSIVFLFATLFRTSTTAVTV GIVMFFTFNIISTLMFKLIDKYHWFKWNPFNFLNYSNQIVDPTRHTLTLLSDNQLFFGSL VYTLFFLCIGLLFFRRRNV >gi|238617817|gb|GG669604.1| GENE 210 214351 - 215361 951 336 aa, chain - ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 1 334 1 331 333 415 62.0 1e-116 MIKIGINGFGRIGRLALRRIMEIKDPNIEVTAINDLTTPSMLAYLFKYDSTHGTAPYDVS STDHSIIINGHEFNVYAERDASKIPWVKNDGVQLVLECTGFYTSKEKSQAHLDAGVKKVL ISAPAGPMKTVVYGVNQDILNANDQIISAGSCTTNALAPMAYTLNKEFGIEVGTMTVIHA FTSSQMILDGPKGKKFRPNRTASANTIPHSTGAAKAIGLVIPELDGHLNGHAQRVAVVDG SVCELVSVLKTKGVTADKINSAIKPYTKDNPAFGWNEDEIVSSDIIGDTHGGVFDPTQTE VTTNGDFQVVKTATWFDNEYGFVSNMIRTAKSFGDQ >gi|238617817|gb|GG669604.1| GENE 211 215599 - 215847 335 82 aa, chain - ## HITS:1 COG:L195720 KEGG:ns NR:ns ## COG: L195720 COG1937 # Protein_GI_number: 15672769 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 4 81 5 83 84 68 54.0 3e-12 MACDPKIANRLKRAEGQIRGILKMMDDDKSCREIMPQLMAVRSSVDKVMGLVVAENLRRC LDEEGTQHDEKLEEALMMITKL >gi|238617817|gb|GG669604.1| GENE 212 215850 - 217505 1611 551 aa, chain - ## HITS:1 COG:L194050_1 KEGG:ns NR:ns ## COG: L194050_1 COG0446 # Protein_GI_number: 15672768 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Lactococcus lactis # 2 454 4 456 456 498 55.0 1e-140 MRVVIVGGVAGGMSAATRLRRLSEDTEIIVLDKGPYVSFANCALPYYMSGEISQRSSLIV ESPDHLKERFNIDVRPNTEVVKINAGRHQVTAVHDGQSETLDYDRLILSPGSKAIVPDIV GLKEADNVFTLRSIPDVDKIMAELGQGLKTAAVIGAGSVGVEAVENLTKRGLKTTLVEAG DHILPFMDNEMAAIVSRETTEHGVALKLNTKVSKIADHRLELNDGSTLQADIIIVAAGVK PDTKLVSEAGIKTGKHGGILVDGCYQTSADDVYAVGDAILIRQQLTGELTSIPLASPANR QGRQVADVIMGENRRNQGGIGTAIVRSFDIAAAATGLNTEQLKQAGVHYQAVHITGQSHA AYYPGGTPLSLKLMFDPKSGRLYGAQAVGKASADKRIDVLSVAIKHRMTVFDLPEFELSY APPFGSAKDPVNMIGYAAENLVEGLSENIQFDEVDDAVKAGAYLVDVRNPEELDRDGRLP NAVNIPLDDLRNHLNDLPKDRQIIVSCRSGQRSYIAERILKNDGFKVKNLDGAFLIYSAA YPQRIQHIGGH >gi|238617817|gb|GG669604.1| GENE 213 217562 - 217870 217 102 aa, chain - ## HITS:1 COG:L193291 KEGG:ns NR:ns ## COG: L193291 COG0607 # Protein_GI_number: 15672766 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Lactococcus lactis # 22 101 43 120 125 90 51.0 5e-19 MLVAKFKSITTDQLKEKLINRPTIIDVREDFEYRVGHILSAINLPLAGLANTMTQVSKPQ PWYLICRSGARSKRAATFLSKAGYDVINVKGGMNAWNGPIKR >gi|238617817|gb|GG669604.1| GENE 214 218105 - 219904 1342 599 aa, chain - ## HITS:1 COG:BH1342 KEGG:ns NR:ns ## COG: BH1342 COG0481 # Protein_GI_number: 15613905 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Bacillus halodurans # 2 599 9 605 609 540 46.0 1e-153 MKQTHIRNFAIIAHIDHGKSTLADRIMEQTKTVSERESKDQLLDNMEVEQAHGITVKSRT VRNYYRADNGEEYDYNFIDTPGHVDFSYEVSKSLAASDGAILLVDATQGVQAQTVANFRL AKQNGLTIIPVINKIDSETADVNTTAQQIRQLDPIFNYTKILEISAKTGQNVHGVLEAIY QEIPAPTGQLEKPLKALVFDSLYDPFKGIVAYVRLYDGQLKAGQHLKLMADQTGFTSHEV GVFAPDMKQSKQLSAGDVGYVVTGLKDPQLIRVGDTLTESNRPADQALPGYQPAKSMVFA GFYPKDDHYKELKAAVEKLALNDSSFHYVEETSDALGPGFRCGFLGMLHLQIIRERLNDE YQVAVLTTAPNSTYQVYLKDKRVETPLIVTNPVKFPDFSKIDYVEESFVKAVMTTPSASL GPVMRLADNHLGTLLDMNNHGDLVELVYKLPISEIAYDFFNELKSESHGYATLDTSFLDY ELADVVKIEVHINYAPVDALDVIVHRQDAEKIAQGIVKKMKYTVPRRLYPMPVQAFVEGK SIARIDVPPLRKNAAVNGDKRSISKKQQLLRRQNVNKRQAARSDIELPQEVFNAILELD >gi|238617817|gb|GG669604.1| GENE 215 219919 - 220401 328 160 aa, chain - ## HITS:1 COG:no KEGG:JDM1_2495 NR:ns ## KEGG: JDM1_2495 # Name: not_defined # Def: transcription regulator # Organism: L.plantarum_JDM1 # Pathway: not_defined # 1 154 61 214 220 141 49.0 8e-33 MFLLLNGYQNYFKKLIKKLQQLPPELSNEVFCEFMIAQTRYLIRDQSVLVRLNALRAPVL EGRANIQQTLAGRKRLYEISQRLGEVIAERITLISASEASHLFVVQSAIISGLMNMMGLD EFNHKKLTSNFKDFRVNLETDAVQAFKFYLDGFLASKTGK >gi|238617817|gb|GG669604.1| GENE 216 220892 - 221005 107 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEKQDLASAYRRLKSPSIKIRKRALKIIKEAKHHTSK >gi|238617817|gb|GG669604.1| GENE 217 221032 - 221301 467 89 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227508060|ref|ZP_03938109.1| SSU ribosomal protein S14P [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 89 1 89 89 184 100 1e-44 MAKKSKIVKYEKQQKLVAKYADLRRELKAKGDYEALAKLPKDSNPIRMRRRDHIDGRPRG YMRKFDMSRLNFRKYAHLGQIPGVHKASW >gi|238617817|gb|GG669604.1| GENE 218 221315 - 221464 250 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227508061|ref|ZP_03938110.1| 50S ribosomal protein L33 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 49 1 49 49 100 100 1e-19 MRKNIVLECVETGERIYLTSKNVRNNPDRLELKKYSPKLRRRAIFRETK >gi|238617817|gb|GG669604.1| GENE 219 221487 - 221723 151 78 aa, chain - ## HITS:1 COG:SA2370 KEGG:ns NR:ns ## COG: SA2370 COG0492 # Protein_GI_number: 15928163 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Staphylococcus aureus N315 # 9 78 299 368 368 60 35.0 7e-10 MSMMNQLSYPTFLCWDPQVQHGDADLCYVYKYRQRFAPLAETVLRRIGIEINPRITTMYR RAGMYLQEFDHCDVNCDC >gi|238617817|gb|GG669604.1| GENE 220 221650 - 222615 809 321 aa, chain - ## HITS:1 COG:SA2370 KEGG:ns NR:ns ## COG: SA2370 COG0492 # Protein_GI_number: 15928163 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Staphylococcus aureus N315 # 23 313 22 306 368 210 40.0 3e-54 MAQHVSITVIGGGAAGIGFGAAVKSYGFRDFVILEKGEIGDSFRRWNRHTRFISPSFTTN GFGFPDLNAVTPETSPAYTLGTEHLSGRDYAYYLQKVAQNKSLPIRVHTEVEEVKTLPDH RYALQLVGQPPLVTDYVFIAIGDYAYPYVPKIPGSAYGIHYVDVKDYNHFKSGEEQVIIG GNESAFDLAINLAEKNIVNDLFSAESAFNSNDPDPGHRLSTYTYERYMAHADLINLNVGK SVLAIKHDHHGDDYVILFKDGSITKTENQPIFATGFANILSPLAEKLFINKDNRPVLDEH DESTILPNVFMLGPPGSTRRC >gi|238617817|gb|GG669604.1| GENE 221 222877 - 223665 486 262 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2279 NR:ns ## KEGG: Lbuc_2279 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 259 1 261 263 192 45.0 9e-48 MTSFGALTNALTRRKIQVINHLLVLDIIAILLTILYAVYQGDLSAADPLIYTMSYSLVVF FVAFILIARHNERIFVNDSYRLVPTSDTGLYSANLLSAFISMIYLGVTQIIFSMIAAAMN FQQVMTTLGQAFEHSSPTPGSMNSRSEIIGALIGLVILMIVSTIFAWASISLIHLTTSAL TAFLPDSRSRLYRFILYVVVIAAILYILGKIVNPIGDIFYGMVNDNSYYQIYLSSLALLV VAGLESAVNVYLLRNWVETTNW >gi|238617817|gb|GG669604.1| GENE 222 223658 - 224371 193 237 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 214 1 223 305 79 26 6e-13 MTNSIEIKNLNYRKNMKPILSNVNLTIASGKIVGLLGENGAGKTTLMRLIAGVAKGYQGQ ISVVDESKIAAKKAIVSFSEQLSGFNQNMKIERIVRFYEDVYPDFSEDKYNQMAGFLQIN EDQKLSQLSKGMREKLIIGLALSRRAKVYLLDEPFGGIDSMSRKKIINSIIRWKPDNATI LVSDHYVSEIASVLDEIVIIKDKTVFAQKSTEEIREKFGEGIEEYYEKVYEGTELHD >gi|238617817|gb|GG669604.1| GENE 223 224368 - 224742 459 124 aa, chain - ## HITS:1 COG:SP1714 KEGG:ns NR:ns ## COG: SP1714 COG1725 # Protein_GI_number: 15901548 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 3 116 5 118 121 83 42.0 1e-16 MNFDDKIPIYYQIKEYIYRQIITGKLEPGEKIPAVRQLAVDLTVNVNTIQRALSELVTEK MIESKRGRGNFVTEDINKVKELKGKLIMEQLKQMYDSLRKLNVSDQEILDYVSQYINKQE RDQK >gi|238617817|gb|GG669604.1| GENE 224 224976 - 225866 1010 296 aa, chain + ## HITS:1 COG:DRA0143 KEGG:ns NR:ns ## COG: DRA0143 COG1250 # Protein_GI_number: 15807812 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Deinococcus radiodurans # 1 295 52 347 347 330 53.0 2e-90 MAIKKVTVAGSGVLGSQIAFQSAFKGFDVTVYDINQEAVNKAKDRIKNLRHAYHRDIAAS DEEFNAGISRLKYTDDLAQAVSDADLVIEAVPERPDIKHDFYKKISTLAPAKTIFASNSS TLVPSMFAADTGRPKQFLNMHFSNQVWLNNTAEIMGSPETDPAIYNEIVQYARDIGMVPI QLKKEQPGYILNSLLIPFLDAAEKLWINGVADPHTIDRTWIVATGAPFGPFGILDAVGIR TAYNITAASLPDNPGLQPILDKLKELLDEGKLGQESGEGFYKYPNPEFKQKDFLKG >gi|238617817|gb|GG669604.1| GENE 225 225964 - 227277 999 437 aa, chain - ## HITS:1 COG:L180636 KEGG:ns NR:ns ## COG: L180636 COG0477 # Protein_GI_number: 15673521 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 436 31 455 457 261 39.0 2e-69 MGVLTETSMNVTFPTLMKQFHVSLTTVQWVTTGYLLTVALLMLASAFLKRRFTNKQLFVC AALLFMTGDILGGIATSYWVLLLGRLIQAGCVGLTGPLMVNIIMDTVPATKFGTYMGMAN LIILIAPALGPTFGGTVAYFASWRMIFWITLPITALLLILGVFKIKQYSPTRKYEFDWLR FALLSVALTSLIMGLNIMGDPHGLINCLWYFAVTIITFGLFGWRSKYSHKALFKLSVFKH PSFIYSFLPYILLQASNIGINFLLPNYVQVVDGASAFIGGLVLLPGSILNGLGQPIYGWM LDRYGGKLPLYLGNALFFITALGFTVFGRHLTIIAIILLYLVFAMGRSMAFGNSMTYGLK ILSADVRNDANAVYSTGQQVAGSIGTTVMAVLMSSITVPHLTNAQNVAVGSQIAFGLILL VGTVNFWFFTKLFKLKA >gi|238617817|gb|GG669604.1| GENE 226 227797 - 228114 172 105 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSGLTSSIAILVLLLLFCIAYIVNPIKAPSNHIGYRTKLSRSSNGNWQLSQKLFYCLSIS CQSILVIANAFIDISVSTNSFILLGYMFIIFVMIQSILYNRSKTR >gi|238617817|gb|GG669604.1| GENE 227 228276 - 229487 1110 403 aa, chain - ## HITS:1 COG:PAB2227 KEGG:ns NR:ns ## COG: PAB2227 COG1167 # Protein_GI_number: 14520410 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Pyrococcus abyssi # 5 391 16 406 410 343 43.0 5e-94 MTYQFSDRVPESDEDPVGNILKVAGSPDVISFAGGLPAPELFPVAQLKKVTDEVYDESGR QALQYSTAIGYPQLREQIVKRMDHQGVKTTIDNIMISTGSQQSIDLTAKMFVNPGDTVIV EKPTYLCALDVFRSYGAHIVGVDMDENGMKIDQLEKAVAENPNTKFIYTIPNFQNPTGRT MSADRRERMIEIADNYDIMIVEDDPYGAIRFAGDDIEPIKFYDDHERVIYLSTFSKILAP GLRLGWIVAEKSLTKKFTLMKQSADVHSDNLTQHIVAKFMSEYDIDDHIDKIKQVYRKRE RVMMNAIEAFFPKNVHYSHPEGGLFIWVEVPGDVDTKALFDTCIKHNVAFVPGEPFYPDA VTPGTFRLNYSNMSEDHIKTGIKRLGDAIKETISESVSSVSRN >gi|238617817|gb|GG669604.1| GENE 228 229484 - 230494 924 336 aa, chain - ## HITS:1 COG:STM2573 KEGG:ns NR:ns ## COG: STM2573 COG1893 # Protein_GI_number: 16765893 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Salmonella typhimurium LT2 # 1 312 1 303 305 145 31.0 1e-34 MKYGIIGAGAMGYRYGVMLQKNAGVDVDFIDTWEPNVEKVREQGGVSVARDHKNRRIIPI NIFYPEEYSGHPDVWIIFKKQMQLAEELDRDNVAGIFHDDQYVFSAMNGMGHFEKIAKFF PKNHIICGTAMIATRMDGPANVDFMGVEGTEVMHMARYTNDKPDEKTKAIADDFKKAKLN PVFADDWMGMCMSKVVFNAVTNTLCTMFEMQMGQFIEYEGVRAMARQLFDEAYDACERAG IYLIPTRQQQVDSVITVSQEYKYHYPSMYQDFSKGRPTEVDYINGYIAKIGREHDYICRT HEFVVHEVHMAEMMRKYHKPQENVADNNTQREGVRQ >gi|238617817|gb|GG669604.1| GENE 229 230945 - 231142 125 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIIVPTMTSGRASASFPKKRSTMAPIQSSSEISPPIPINNLIATAFFQSNYNVRTAISAN DHRAL >gi|238617817|gb|GG669604.1| GENE 230 231238 - 231762 314 174 aa, chain + ## HITS:1 COG:L1005 KEGG:ns NR:ns ## COG: L1005 COG3153 # Protein_GI_number: 15672038 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Lactococcus lactis # 1 173 1 173 173 177 52.0 1e-44 MQIRTVRKEDYSAISDLILTAFSKSSNGYGGEAELVEKIRLDPTYHKTLEVVADQSGQII GHGLLSEVQVKNANQSKTGLCLAPLEVSPSFQKQGIGQAILAELEQRAKRAKYNFISILG WPDYYSRFGYKKASLFNIKAPFPAPDDAYMIKALVPKGLEGVTGTVNYLSAFNI >gi|238617817|gb|GG669604.1| GENE 231 231895 - 232314 424 139 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508074|ref|ZP_03938123.1| ## NR: gi|227508074|ref|ZP_03938123.1| hypothetical protein HMPREF0496_0237 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0237 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 139 1 139 139 265 100.0 1e-69 MKKRFFLILIMSIFAIGIVLPSMTSPVAAQNKIVLKSGWKVIKGAAYPGVPYHAKTPKQS AILWTTPTVSKHTNLNKYPYETWNVVGVWVLQKGAKKRVYYQVDGEHDTGWVWRGYLTKG KNPNAAKANDNPNRLPEDD >gi|238617817|gb|GG669604.1| GENE 232 232521 - 233102 500 193 aa, chain - ## HITS:1 COG:BS_yvkB KEGG:ns NR:ns ## COG: BS_yvkB COG1309 # Protein_GI_number: 16080573 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 7 161 4 155 189 71 30.0 9e-13 MVQKITTDEKILNAFSKLLEENGYTETTTKKIAQAAGVNESTLFRHFKDKEQLVKELVQK YMSDIDTVNAGFIPSGDIVTDLMRVADLYNHFVEAHKALFLIGMRDSFQFPKLKEMIIQL PMKLKKILVSRMTEMKHSGEINGLVNIEITATNYITLILGHALIQNIYTDTGLDISQVDF VQKNVRDFAEHLK >gi|238617817|gb|GG669604.1| GENE 233 233155 - 234480 914 441 aa, chain - ## HITS:1 COG:no KEGG:LEUM_0159 NR:ns ## KEGG: LEUM_0159 # Name: not_defined # Def: hypothetical protein # Organism: L.mesenteroides # Pathway: not_defined # 1 435 1 408 412 283 36.0 1e-74 MNFKKFITSRGVILATIVSILYGCLIFAIYFTGYQAMPKHVDELTVTVVNRNKNTRTLAD QIEKGLPFKHIKKVSSLRTAKKQLHNKKTAMIIEIPWNFKSRISSNSKTNLNFYIDEATP YSQVSALKTVSQKIGYTVNQQVIIEKGKAMLLKEPMTGLEKTVQTKQAQLQNQLQAKKQQ IAQAPEAQQPRLEALLKHQELNAKQKLEAQVKQQSKAIRNRVSDTYQDVDHSVGTNLVRV HPVKTGMNHALAPFIANIAVYLGTLIGALLLYGTYAKFVPIVGRFKSFAFLETAAILLSI IGSLFTSWSITGFMGLGGSQFANLWLNHGLEIFGSLNFNLILVLLLGQIGTALNIFLTMI QVVSGAGMIPLVTLNSFFKGAHYISPMFYSIQADFNIMFGGSQAGMYLGQLVLLALGILI VNIVIVTFRKHQPILDFHQLS >gi|238617817|gb|GG669604.1| GENE 234 234748 - 235695 835 315 aa, chain - ## HITS:1 COG:BS_ybgG KEGG:ns NR:ns ## COG: BS_ybgG COG2040 # Protein_GI_number: 16077310 # Func_class: E Amino acid transport and metabolism # Function: Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) # Organism: Bacillus subtilis # 5 311 4 306 315 281 45.0 1e-75 MTDLIKENLDSKRALVLDGAMATELEKHGVDTSNDLWSATALINDPDAVKAVHTSYFEAG ADITITDTYQANVEAFKKVGFTEDQSEKLITEAVRLALESRDDFYATLPTAERAKRALYP LVAGSVGPYGAYLADGSEYTGHYQLTNEAYQTFHQRRMRLMDEAGVDVFAFETQPNFEET KALADLLREKFSDRFAWLTFSIKDPEHLCDGTSLAKAVSYFEDNPQISAVGVNCTSMNLI EDSIKTIASNTNKPIIVYPNNGDIYDPKTKTWTPNPNATTFAELTPKWLAAGAKIVGGCC RTTPADIEQVAESLF >gi|238617817|gb|GG669604.1| GENE 235 235818 - 237212 1101 464 aa, chain + ## HITS:1 COG:BS_ybgF KEGG:ns NR:ns ## COG: BS_ybgF COG0833 # Protein_GI_number: 16077309 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Bacillus subtilis # 4 454 7 458 470 538 64.0 1e-153 MKEKPHIALERKMESRHLLMISLGGVIGTGLFLSSGYTIHEAGPVGTILAYGIGAIIVYL VMLCLGELSVAMPQTGSFHVYADKFIGPGTGFTVAILYWLTWTVALGSEFTAAGLIMRTW FPKSPTWIWSLLFMIVIFTSNALSVRFFAETEFWFSSIKVIAIILFIILGGLAIFGVIPI KGYTHAPLFHNLVKDGLFPNGFKGVFTTMLTVNFAFSGTELIGVTAGETKNPEKNIPKAI HTTLFRLVIFFIGSITVMASLIPWQKAGVNQSPFVLVFNSIGLPFAGDLMNFVVLTAILS AANSGLYASTRMLWSLAHEGMIPLKYAKTNSRGVPMIALVLSMLGGVLALVSSVVAASTV YLVLVSISGLAVVIVWMAIAYSEINFRKAWLKAGHTKSELKFKTPWYPFVPWVAFILSFL SCILIIFDPTQRPALFYMIPFLIGCYLVYYGKTKFKKSKSRRKL >gi|238617817|gb|GG669604.1| GENE 236 237237 - 238220 573 327 aa, chain - ## HITS:1 COG:L181867 KEGG:ns NR:ns ## COG: L181867 COG1275 # Protein_GI_number: 15672360 # Func_class: P Inorganic ion transport and metabolism # Function: Tellurite resistance protein and related permeases # Organism: Lactococcus lactis # 4 304 9 307 324 219 47.0 7e-57 MRLFLKKLPLPICGLILGIVSLGNLFKAIGLTLIGNLWGIIGLGLILLVIAKIVIHFKHS FADLQDPVIASVAPTFTMSLMILSTFLKSWQLPMMPMVIWVFAVCLQFLIMGYFVYSHLL KPSVHLDNVYPSWFVTFVGIGVIPVTAPNFIPAIGTPILWLSLGLYAILLPIVCIRLLRR ELMFEATLPLLAIMAAPASLCLTGYLNMSPAPSWLFSLIMVLLAQTLYWGTFVKIIKYVR LSFYPSFGAFTFPLVISATALNLWHHTFHLVNGLSNLVGIIANVEITIATCMVIFVLVRY GIFLVQLAEQSLENQKVSASQEETLTK >gi|238617817|gb|GG669604.1| GENE 237 238330 - 239157 644 275 aa, chain + ## HITS:1 COG:L0220 KEGG:ns NR:ns ## COG: L0220 COG0583 # Protein_GI_number: 15672356 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 271 1 263 272 158 31.0 1e-38 MFKFLETFMTVYKTRSFSLAAQQLFITQPTVSNQIKQIEMQLHTTLFERKSRREITPTPA ADLLYQQSGKILNDWQAVHDQIGHLENDNVRYVHFGISQTISRILFSKTASRLLTDFPDV NFDITVSNSENVLNQVETYKVDIGIIEKPLVTETIRRLSIGKDQLVKAGKDTGTWITREA GSGIGYYTEQYFREADIQRQKLIRVNNSGLIRRMISQGVGQALLSSQDVPQGIPIESLGN HFKRDFYLLVKEERAKDPFINQFLELIKSVLPTNI >gi|238617817|gb|GG669604.1| GENE 238 239421 - 240749 1159 442 aa, chain - ## HITS:1 COG:CAC0278 KEGG:ns NR:ns ## COG: CAC0278 COG0527 # Protein_GI_number: 15893570 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Clostridium acetobutylicum # 3 428 5 433 437 314 39.0 2e-85 MKVAKFGGSSVADSDQFKKVKAIVMGNADRKAVVVSAAGRSENEPVKVTDLLIKIEQLRD AGQDYLPVFNHIAERFVSIRDDLGLNVAIEDDLRVIKSQIAQAGHDYLVSRGEFLTAKLM ADFLGFRFVDAKQFMIFNDDQFDYSESRNLLKSIVADSSRIVVPGFYGVDESGRTHLMPR GGSDISGSILANLLDADLYENWTDVSGIKMADPRIIDQSRKINELTYEELQELSYMGISV FQEEAVQPVRAKRIPIAILNTNHPEEDGTLVVDQARENTANLITGIAGKKDYVIISINKY QLSKRLDILSKVFSIIQRFDVSFDYLPSGTDSFSFIAKRAAVSNKVQEIISALEEESDLD SVKLEKDISLVAVVSDQLGKRPAVAGKILDILDNSQIKIHLVIQESSDIKLVFGVANKDY EKTIEKIYRNVSLNEKKLRMAI >gi|238617817|gb|GG669604.1| GENE 239 240746 - 241957 936 403 aa, chain - ## HITS:1 COG:SA1164 KEGG:ns NR:ns ## COG: SA1164 COG0460 # Protein_GI_number: 15926909 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Staphylococcus aureus N315 # 12 349 4 350 426 232 39.0 8e-61 MNKRENREVTAVNIAILGFGTVGTGVYKIIKKANRLTQNLHVKHILIRKNKKPDLPEMTD SFDEILNDKDLDVVVEVIGGIEPAHQYILEALKHKKHVITANKAVIARYMDEFTKIADEN GVKFYFESSVGGGIPWIQGLERALRVDDVNKIQGIFNGTSNFILDQMKRSGETFNDVLLK AQALGYAEADPSADIDGLDVANKLCISCDIAYDYFVKPTAELPIFGIRNITEDDISHFSK EGYTVKLMGKSHQHGNEFDYVVEPTLYHGDTLEANTCDNYNLISLHGETIGNLKFMGQGA GQLPTANAVIQDILDIFQNKEHLKREFKSKLKYRSDLTRSNYIVRSEIDCAHLFAKFNPC TRGDYLLVQQIPVGEMHRLMRKVLEKDETAFMASLPSKEGESE >gi|238617817|gb|GG669604.1| GENE 240 242032 - 243540 1161 502 aa, chain + ## HITS:1 COG:CAC0999 KEGG:ns NR:ns ## COG: CAC0999 COG0498 # Protein_GI_number: 15894286 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Clostridium acetobutylicum # 5 486 6 491 496 422 46.0 1e-118 MNKNYTSTRNDSVSISAKEAIKKGFADDKGLFVYPDLGNDQLDLEKILTLDYKNIAKTVL AKLLPDFSKGEINDSVDNAYSSSFDSDKITPVAAVDNFHILELFHGPTSAFKDVGLQLLP QLMKHVLTDDNKVMILTATSGDTGKAALEGFKDLKNMGIIVFYPDGGVSKIQKLQMITTG GNNTKVAAIKGNFDDAQTNVKLIFNDNTLKEQLGSTVSLSSANSINIGRLIPQVVYYFDS YKQLVEDGTIKPGDKVNFTVPTGNFGDVLAGYYAKLLGLPVNKFVVACNENNVLATFFEH GIYDRNRPFFQTVAPSMDIQISSNFERLLYYKSGENSQYVKQLMDDLENNGKYEVSKDVL KAIQEDFYCGYSTDKEIEESIKDVYEKDGYLMDPHTAAGYKVMRDYQKLDDTPMILLSTA SPYKFVNAVATAVLPEEANSDNVLQTMKDLAAKTNAPIPENLQKVWDLPVRHESVIQKSD MEKYVKEQVEAVFYDKDQSSSN >gi|238617817|gb|GG669604.1| GENE 241 243512 - 244417 615 301 aa, chain + ## HITS:1 COG:CAC1235 KEGG:ns NR:ns ## COG: CAC1235 COG0083 # Protein_GI_number: 15894518 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Clostridium acetobutylicum # 1 267 1 269 296 182 36.0 9e-46 MIKIKVPATSANVGVGFDCMGLAVSFYSTISFEESSERLEIVGCPKEFQTEDNLVYEAFV KGCDYLDKPVPNVKISIDTDVPVARGLGSSSVCVVAGLKAASAWFDNAISTDQLLVLATE MEGHPDNVTPAILGGLCVSFLDEQNRPVVVKYDVNEKLNFVALIPNYEVSTHKARKVLPK TMSYADAIHQVSRCAVMTKALELGDAHLIHEACDDRMHEPYRAKLIPDYAQAKAISEQSN GTMYISGSGSTMMAITPNEKSADDILKNAKAAFPDWKIRKMAVDLTGVQSEVIERGKVLH R >gi|238617817|gb|GG669604.1| GENE 242 244395 - 244829 319 144 aa, chain + ## HITS:1 COG:CAC1234 KEGG:ns NR:ns ## COG: CAC1234 COG4492 # Protein_GI_number: 15894517 # Func_class: R General function prediction only # Function: ACT domain-containing protein # Organism: Clostridium acetobutylicum # 2 144 13 155 155 122 43.0 2e-28 MEKYYIVDSSILPESFDKVIQARQLLESGKVRQVSEAVKIVGISRGTYYKYKDLVFLPEE NMIDRKAVISLMLENRRGMLSKILQTVSESSASVLTINQNIPIHNIASIVISLDLSHLTG TVDDLLNNLKQVSGASNIQLVSIE >gi|238617817|gb|GG669604.1| GENE 243 244929 - 245306 258 125 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508086|ref|ZP_03938135.1| ## NR: gi|227508086|ref|ZP_03938135.1| XRE family DNA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] XRE family DNA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 125 16 140 140 177 100.0 2e-43 MVMMKQDRNLDQKTNKSSKKPWLDGALLAILALIIILSITITNLHSAEQAKMIGILIMVL ALILVPLSYFKVKSFYHGDSKDLFVPKSMGVGITINPNNPLGKVIWVVIVLVLLYFLFKI MLTPA >gi|238617817|gb|GG669604.1| GENE 244 246026 - 246796 996 256 aa, chain + ## HITS:1 COG:SA0122 KEGG:ns NR:ns ## COG: SA0122 COG1028 # Protein_GI_number: 15925830 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Staphylococcus aureus N315 # 3 256 5 258 258 199 45.0 4e-51 MTKLAIVTGAGQGIGEGIANRLAKEGYAIAVADINQRTAKKVAKQLKDDGYKAKAYYVDV AHRSEVFDLVKTAVEDFGDLAVFVNNAGVAFIDSFVDSQPADVERLFDVNLKGTYWGIQA AAKQFIKQGKGGRIVNAASLAGVEASALQSAYSASKFGIRGLTQAASKELAKYKITVNAY NPGVVRTPLRDGIDKRTAEIKKIPIKEQQANVLTEISLGREATPEDVADVVSWFVSPHAK YITGQSVQVDGGMRYQ >gi|238617817|gb|GG669604.1| GENE 245 246828 - 247922 972 364 aa, chain + ## HITS:1 COG:SPy0320 KEGG:ns NR:ns ## COG: SPy0320 COG1135 # Protein_GI_number: 15674484 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Streptococcus pyogenes M1 GAS # 8 351 5 353 354 320 50.0 4e-87 MAESTHPIISLQDVSVTFQSNGKPLNAVDKVNLQIRRGDIYGIIGYSGAGKSTLVRTINL LQKPTTGTVTVSDQDLQKLSTPKLRNARKKIGMIFQHFNLLNSRTVLNNVEYPLLSQAIG KPKRQAKAKKLLELVGLREFENSYPDQLSGGQKQRVAIARALANDPDILISDEATSALDP KTTNDILKLLKHLNETLGLTIVLITHEMQVIKSVCRHVAVMDEGKIIERGDVADVFSNPQ QALTQNFVDSSANVTEALEQIKADKSLQNLSKNERLLFLKFKGQATKQSLISDLTELYHL SANILFGNIERIGATSIGYLIIILSGETKQLADGINLLNKNGVQVRLIATGKKGEKNNAQ ANIS >gi|238617817|gb|GG669604.1| GENE 246 247900 - 248574 681 224 aa, chain + ## HITS:1 COG:L122401 KEGG:ns NR:ns ## COG: L122401 COG2011 # Protein_GI_number: 15672305 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Lactococcus lactis # 6 223 9 230 231 159 50.0 3e-39 MLKQIFPNVINIWPQFLQSIWETIYMTFWSSLIAGISGLAIGIVLVITQKGGIAEDPYVY SLTDKIVNFLRSIPFIILLAVMFPITNFIVHTTVGTTAALVPLVVGIFPFYARQVQNALL EIDPQVIEAARSMGSSTTEIIFRIYLREGLPDLIRASIVTVISLIGLTTMAGAIGSGGLG DIAISIGYARFENDVTVAAMLVILVLVFLVQIIGDWFAKKTVHL >gi|238617817|gb|GG669604.1| GENE 247 248600 - 249460 904 286 aa, chain + ## HITS:1 COG:SA0422 KEGG:ns NR:ns ## COG: SA0422 COG1464 # Protein_GI_number: 15926141 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Staphylococcus aureus N315 # 17 275 4 262 280 155 39.0 8e-38 MKKGKGIIITIISIIVIIGIIFGIHTLTGNSTKSSNTTITVGSQGSDYDIWNHIAASKQA KELGLKIKTKQITDGVQLNNATAQGSVDVNAFQSYSYLEAYNKEHKNSQLAALGTTYLEP LGIYSDKYKRISKIPNGATVAIANNPANTARGLLLLQSAGLIKLKKNFGALGNTNDIASN PKHLKFKEIDDTTGPRVLHTVDVVLISNTVALEGHLNVLKDSIFHEKIDISTRSNINVLA TAKKNKDNKNYKKLVKLYHEPAIQKYIKDKYDGTKVEVQKPLSYLK >gi|238617817|gb|GG669604.1| GENE 248 249547 - 250134 524 195 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2314 NR:ns ## KEGG: Lbuc_2314 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 195 1 176 176 132 60.0 9e-30 MSLTIKELADELAVSKTAIRKHMDDEFRSTYTIKQGNKILIKDEGVDVLKEQFKNSESST ENSAESNATASADSKNSKDTTALLAETLEDQRKQIEEKDKQIRELHQLLDQSQRLQLDVQ NKLKQLQNKMGNSSETKTIEENVTNQSSDNQKQSENTQQATKVSDSYRPDQVLSSDGSSY QAAPRKKKHWWQFGR >gi|238617817|gb|GG669604.1| GENE 249 250513 - 251970 1663 485 aa, chain + ## HITS:1 COG:SA2396 KEGG:ns NR:ns ## COG: SA2396 COG0531 # Protein_GI_number: 15928189 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 471 1 470 482 624 71.0 1e-178 MSNVFAKMFRKEDPLVYQDKDSHLIRSLTTKDFLALGVGTIVSTSIFTLPGVVAAQHAGP AVALSFLCAAIVAGMVAFAYAEMAAAMPFAGSAYSWINVVFGEFWGWIAGWALLAEYFIA VAFVASGLSANFQGLISPLGFKLPATLSTASTGSNGGLMDLFAIIVILLVTTLLSRGASQ TARVENTLVVLKVIAILVFIFVGATAIKTKNYTPFIPKYHVNADGSAFGGWQGIYAGVSE IFLAYIGFDSIAANSAEAKNPQKTMPRGILGSLFIAVFLFVAVALVLVGMFRYSDYANNA EPVGWALRQSGHEIIATVVQAVAVVGMFTALIGMMLAGSRLLYSFGRDGLLPKALGKLSN NLPNRALIVLTIIGIALGAFFPFTFLAQLISAGTLIAFMFVSIGIYALRPREGKDIPEPS FKMPLYPVLPALGFLGALAIFWGLDIQAKTYALGWFIFGMIIYFGYGMKHSTATIDKENE EARKD >gi|238617817|gb|GG669604.1| GENE 250 252141 - 253493 1121 450 aa, chain + ## HITS:1 COG:SA2397 KEGG:ns NR:ns ## COG: SA2397 COG0160 # Protein_GI_number: 15928190 # Func_class: E Amino acid transport and metabolism # Function: 4-aminobutyrate aminotransferase and related aminotransferases # Organism: Staphylococcus aureus N315 # 4 450 13 457 457 471 50.0 1e-132 MSNLEKASRLIDEENNYYARSARINYYNLVIDHAHGATLVDVDGNKYIDLLASASAINVG HTNERVVKAISDQAQKLIHYTPAYFHHVPGIELSKRLAEIAPGNSPKMVSFGNSGSDAND AIIKFSRAYTGRQYIVSYMGSYHGSTYGSQTLSGTSLNMTRKIGPMLPGVVHVPYPDLYR RYKGESEHDVAMRYFDSFKAPFESFLPADETACVLIEPIQGDGGIVKAPEEYMQLVYKFC HDNGILFAIDEVNQGLGRTGKMWGIQQYKNIEPDLMSVGKSLASGMPLSAVIGKKDVMQS LDAPAHLFTTSGNPVCSAASLATLDVIKDDHLVEKSAKDGEYAKQRFLDMQKRHPMIGDV RMWGLNGGIELVKDPETKEPDNDAATKVIYYAFAHGVVIITLAGNILRFQPPLVIPRAQL DQALQVLDDAFTAVESGNVTVPKNTGKIGW >gi|238617817|gb|GG669604.1| GENE 251 253576 - 254778 745 400 aa, chain - ## HITS:1 COG:MA1858 KEGG:ns NR:ns ## COG: MA1858 COG0477 # Protein_GI_number: 20090708 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Methanosarcina acetivorans str.C2A # 25 370 43 389 416 209 39.0 1e-53 MSSEKVQPRMGNVGFIIFLALLSAFVPLSTDLYLPALPTMTTFFNVSEITMNLTLILFFV FYSVATLIWGPLSDRYGRRSILLIGLTIYMLAGILCGVATSAFEIILFRVLQAIGGGVAT TIATAVIKDVYTGRKQETTLAIVQSMVVISPALAPVLGSLLLTFISWRGIFFTQALLGLI VVLGAVIFQETHDTSKESISVLHSLGRLGALMKNPPFSAMLINFSAVSIISLSFISSSSY IFQVHFGLSSQAFSYFFAFNAIGMLIGPLLYIRLSKYIDRMVILYACFFLGIIGGILILG FGLNNPYLFAITELPATLASSASRPPVTYLILKQQENDNGSASSLYSAGGTIMGSIGMVV VSFANHWPVLIIAIIDIVINVLCAIGLYVTLRGLRNQIKV >gi|238617817|gb|GG669604.1| GENE 252 254775 - 255230 407 151 aa, chain - ## HITS:1 COG:CAC1468 KEGG:ns NR:ns ## COG: CAC1468 COG0454 # Protein_GI_number: 15894747 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 12 143 9 142 142 101 38.0 5e-22 MVIHRTGMTGKELDKIAEIWLTANLEAHSFINKDYWLSNYVAVKKQLGEAELFIATQGQT ITGFLGISGTYIAGLFVDKRFRSRGIGRQLLDTAKRSRSKLSLSVYEKNKAAFHFYIHQG FIKTSTEIDGATGETVFNMEWQKANHRGRFK >gi|238617817|gb|GG669604.1| GENE 253 255401 - 255883 386 160 aa, chain + ## HITS:1 COG:L92464 KEGG:ns NR:ns ## COG: L92464 COG3613 # Protein_GI_number: 15672475 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside 2-deoxyribosyltransferase # Organism: Lactococcus lactis # 7 147 10 146 159 69 31.0 2e-12 MPIHQNSVYLASPFFSDGQKDRIATVVSLLKQNSTIDSDRIFIPQDHQFEQEPFGSFKWQ DAVFASDMRQVRKADVVVAILDYQLEEGLTEPDSGTIFEIGAAYQANVPVIMVQFGNNGQ LNLMLARSYTAFFNGKDDVTDIKNYDFNNLETRYTDKKVL >gi|238617817|gb|GG669604.1| GENE 254 256110 - 257498 1152 462 aa, chain - ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 7 453 5 449 449 251 37.0 2e-66 MDKRINLTRKQYIITASLLFGMFFGAGNLIFPIHLGQMAGTNWLPAAIGFLVSAICLPLL SILSISMTESNSMYDLALPAGKIFALAFLILTHSSLGLLIASPRTATVTFSMGIQPFIPK AWTQMSLLIFSLLFFGATLALAYNQNKITRNVGKILNPILVLLLAFLFFVAFFLKGNDMR SMNLLPTAGKGTGSLINGFLQGYNTMDALAGLGFGVTIVTALKLFGQNNNHDRSKSVAKI GALTMGFEALIYIFLIALGASSLSYTKLSADGGTAFTTIMQHYTGMAGASILAALTLMAC LTTSIGLITSLSQDWGRRFPRIGYHKFLIFATIVSFSIANFGLDQIILYSSPILSFLYPL AIALIILGIMRPLIGRRKLIYRSTISLTMIPAILDLIHNLPPVFAKMSLFANIDSWASNT IPLYSVGLDFLPFMIIGLLGSWAISKFAKEPIPSSESSIHNN >gi|238617817|gb|GG669604.1| GENE 255 257960 - 259147 1031 395 aa, chain - ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 1 378 1 371 379 227 40.0 3e-59 MAFIGTLCLLLILTTLAGHLSNRLGTPSVIGQILVGVVVGPAILNWIHLDLLLNTFSGIG VIILMFIGGLESNLALLRKYLQPAVIVAIIGVIFPVVMIGAASLAFSFEPLEAIFIGVVF SATSVSISVEVLRDYHSLNTKEGATILGAAVADDIIGVILLSIMISIMGTHGVRTGQSAD NLILVFVEQIGFFGITYLMVKWIVPYLMQIGERLLMASSVTITSMIICLGMAWLADLVGL SGAVGAFFAGIAVAHTPYRRLIENHMEPIGYALFVPMFFVCIGLNMSFAHIGHSIGFVGV LTVFACLSKLFGCGLGALLNGFDIHSSYMIGSGMISRGEMGLITAQIGFSSGVLSSTYYS DLILVIILSTMIAPFLLKHAIHHLPQPKKVNLPVV >gi|238617817|gb|GG669604.1| GENE 256 259418 - 261187 1572 589 aa, chain - ## HITS:1 COG:CAC0742_2 KEGG:ns NR:ns ## COG: CAC0742_2 COG1404 # Protein_GI_number: 15894029 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Clostridium acetobutylicum # 329 545 5 224 276 227 53.0 4e-59 MGSRSKSLLKNVLKCAFVLSVVGAAFMGGESETHAASNKGSETQSLKQALTPVKGPYGYF IDHYKENVKANTTPDSNPAISIFNNTFLSYWSPNGTKKNAGLLQENLNKSIQITDHETQT EIDRSYLTDRRDLRYNLISGFGPYATAFIKDANAQTDFNSVPSSPLPANSPYSSMKWADE NSKLGSVVKLVDLNEASDWSSTGTPKAYIKYVRPYRLSSQVKVNPYLTNVMASAAQNDYD FPSGHTTAAFETGESLAYVFPQRFQQLITRSSEVGYDRVLAGRHSPFAVMGGRILGTAMT ASTLNDPANKQLIDQAYQDAQKDLSKASDSTVKDTFANYEKNLKDYTYRLTYGFKPISST NKPMVVPKGAEVLLKTRFPYLSDTQRREVLYTTGLPSGYPMLDDPEGWGRLNLFKAANGF GEFLTNTTVNLDASKGGFNANDTWKNAISGKGGLIKEGSGKLTVLGDNSYSGGTTVKAGS LVVDNNQALGKGAVKLDGGTVTLSSKNVTVSGNYTQGNNGVLQLNAGDKAHIDGTAHLNG KLVLDGKSNTHGTVLTFNKRVGEFDHVTLHEFGKGAHVVYSNKAVKVVQ >gi|238617817|gb|GG669604.1| GENE 257 261219 - 261320 74 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSTVLNEMRQTPKIGWIISLVVLTIIVILISIY >gi|238617817|gb|GG669604.1| GENE 258 261509 - 262234 847 241 aa, chain - ## HITS:1 COG:SPy1240 KEGG:ns NR:ns ## COG: SPy1240 COG0704 # Protein_GI_number: 15675200 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Streptococcus pyogenes M1 GAS # 1 216 2 217 217 184 45.0 1e-46 MRALFGDELKKLHGRFVEMGLNISEQIYNSTQAFIEHDKKLAQEVIDADNNTNGEEMDLE KQALKLIALQQPVATDFRVIISILKASSDLERVGDHAVSIARETIRMKGQARIPGVEKEI AQMTDQVRDMLEKALDAYSKNDELAARNLSKEDVDVDKQYLLIRDEITKAVHNDTETVQS SASYFMVIRLLERIGDHIVNLAEWIVYSASGKIVELNPGKANPELVRRLYSGVMGARQPE K >gi|238617817|gb|GG669604.1| GENE 259 262247 - 263029 352 260 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 13 256 1 240 245 140 35 2e-31 MEKTTIKTTTKQMITSEDVHLYYGSFEALHGINLDFAEHEITALIGPSGCGKSTYLRCLN RMNDLIPGVTINGSIQLEGKDIYAPKVDVVELRKRVGMVFQQPNPFPFNVYENVAYGLRL AGIRDKSILDERVETSLKQAAIWDEVKDNLYDSALSFSGGQQQRICVARVLAVQPEVILL DEPTSALDPISSAKIEDTLLNIHDKYTVIIVTHNMQQASRISDRTAFLLNGNLVEYDKTE KLFMNPEKEETSDYLNGKFG >gi|238617817|gb|GG669604.1| GENE 260 263046 - 263840 301 264 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 23 251 5 231 245 120 34 2e-25 MQTYSFDQKHIINIPTEKALTTENLQVFYGDNHAMHDATLEFPRYRITALIGASGSGKST YLRCLNRMNDAIATVKGKIIYRDTDINSKKINVYEVRKHISMVFQRPNPFAKSIRENITF ALKRNGIKDKQELAYRVENSLKSAALWDEVKDDLDKSALALSGGQQQRLCIARCVAMKPD ILLLDEPASALDPISTAKIEETLKELRKSYTIIIVTHNMQQASRIADYTAFFHMGHVLEY DKTEKIFTNPQIKATEDYISGNFG >gi|238617817|gb|GG669604.1| GENE 261 263850 - 264737 910 295 aa, chain - ## HITS:1 COG:lin2640 KEGG:ns NR:ns ## COG: lin2640 COG0581 # Protein_GI_number: 16801702 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Listeria innocua # 1 294 1 294 294 341 62.0 8e-94 MNSKAANNVATGVIYLLVTAVVGILVFLLGYILVTGIPHVSMHFLTSAAQSFKAGGGIRD QLFNSLYLLVLTLIISFPIALGSGIYLSEYAPNNWFTSLIRTAIEVLSSLPSVVVGLFGY LVFVIKFNVGFSILAGAIALTFFNLPLLTRSIEESLEDVPDLQREAGLSLGLSRWKTITG IVFPAALPGILTGIILSAGRVFGEAAALIYTAGQSAPIVSYSNWNPFSPTSFLNPMRPAE TLAVHIWKVNTEGVTPDALQISSGASAVLIVVILLFNLGARYLGNWMFKKMTAAK >gi|238617817|gb|GG669604.1| GENE 262 264734 - 265696 828 320 aa, chain - ## HITS:1 COG:lin2641 KEGG:ns NR:ns ## COG: lin2641 COG0573 # Protein_GI_number: 16801703 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Listeria innocua # 14 319 1 307 307 346 62.0 4e-95 MEGIKPGTEDKLKMDGIKKELRNPSKATHQDYFGKTISYICIAFVGFLVLSILYFITTRG MATFTENHVNLWAFLSGTNWNPGMLDSHGQPEVGALPMIVTSFCVTVLAALVATPFALGV ALFMTEISPKRGTKFLQPVIELLVGIPSVVYGFIGLSVIVPLIRHAFGGTGFGILAGTIV LFVMVLPTITSLSIDSIRSVPMYYRSASLALGATRWQTIYKVVLRAAAPGILTAIIFGMA RAFGEALAVQMVIGNATLMPHGLLTPSSTLTSQLTTGIGNTTMGTLPNNALWSLALILLL MSLVFNVLVRFIGKRGSLKK >gi|238617817|gb|GG669604.1| GENE 263 265839 - 266732 979 297 aa, chain - ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 3 295 2 299 302 308 57.0 1e-83 MKKRSFFSAIVALSAMGVLLAGCGSNSASSSKKSSSSSNVKITAVGSTALQPLVEQAASD YQKDNSKVNISVQGGGSGTGLSQVQEGAVTIGNSDIFAEQQSGIKANKLVDHKVAVVGMT PVVNKGVGVKNLTMAQLKGIFTGKYKNWNQVGGKNEKINVVNRVSGSGTRATFEGAVLEG AKAIKTQEQDSNGTVQKIVSSTPGTISYLAFSYVNSKIEAPSVNNVKPTDQNVENNKWKI WSYEHMYTKGQPNAATKKFLNYMNSSKVQDSLVQKLGYISIHDMKVQKNASGAVTTK >gi|238617817|gb|GG669604.1| GENE 264 266919 - 267650 499 243 aa, chain + ## HITS:1 COG:lin2644 KEGG:ns NR:ns ## COG: lin2644 COG0745 # Protein_GI_number: 16801706 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 63 234 66 234 236 101 37.0 1e-21 MPLEILLISQDLQLANKLEKMLNSFNIKMRVSFEPLEHLLQQISGVVWDLSSISLPNNAS EIQIMRSQVAGPILLLDKTDEPVETICRYFLSYHLDDYIQKSSIKEVAARIVQKLWVYQN KDRLQINKQGQANSNLTAGHLKIDLNKFQVNNGHNRLSLSPIEYKLLLFFISHSNTVLSR TQIASAVWGNTSGATLRIIDTHISNLRKKIEKQPKNPQMLKTIRGFGYLFKVENKTADAS HVK >gi|238617817|gb|GG669604.1| GENE 265 267793 - 268005 70 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508107|ref|ZP_03938156.1| ## NR: gi|227508107|ref|ZP_03938156.1| hypothetical protein HMPREF0496_0270 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0270 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 70 1 70 70 78 100.0 1e-13 MIASMGVNVGICLIITGLLSLFYGELFINIAFLGLFGYLMFFSLYIKTNRFLWLAVGMIM FCCALSFLLF >gi|238617817|gb|GG669604.1| GENE 266 268644 - 270095 1383 483 aa, chain + ## HITS:1 COG:BH2237 KEGG:ns NR:ns ## COG: BH2237 COG1012 # Protein_GI_number: 15614800 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Bacillus halodurans # 17 482 16 481 481 540 59.0 1e-153 MDSVKNDVTTYPAYLAGKWQTSESRETIAITSPWQHDVIGKVQAVTQSEVDQSIKASKKA QHAWASLSLGDRGQYLNQWANELEKDKEVIATSVMTEVGKNYDDAEKEVTRTIDLIRYTV QEALHMHGESVRGDGFPGGSKEKLGIIERVPLGVVLAISPFNYPVNLAASKIAPALMAGN GVIFKPATQGSISGIKMIQALDRTGLPTGLLSLITGHGSVIGDYLTEHPGINMISFTGST QTGKHLSQKSIMIPLVLELGGKDPAIVCHDANLDLTAKNIVSGAFSYSGQRCTAVKRVLV DDSIADQLVAKLKTAVEKLSVGSPVDDNAIVPLIDNKSADFVQGLIDDALSKGATLITGN HRDKNLLAPTLLDNVTEDMDVAWIEPFGPVLPIIRVHSVAEAIEIANKSNFGLQASVFTQ DIDKALEIAGAVEVGTVQVNGRPERGPDNFPFLGVKASGMGTQGVHNSILSMSREKLTVM NLK >gi|238617817|gb|GG669604.1| GENE 267 270237 - 270419 101 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNAPFTKTLLLFCGEMFEMILITGAFILLGTRAVSIKSLIFLLIVLAILVYQFIYFHRKR >gi|238617817|gb|GG669604.1| GENE 268 270659 - 271429 405 256 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2342 NR:ns ## KEGG: Lbuc_2342 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 3 251 1 250 260 244 51.0 4e-63 MVMVKLRPSIPDFSFTTTPDYRNRLEKIVIDSLPVGIKLLARNFARSTASSYWLLRKTTK RGPQWLTLRIATHPVWLKHAQQLEILWGDPHHFDLLKNLLQTHLNHTEMKASFFQMSGTD LSTLKLLVELERHQLIWYIRMTPDIAQAHKLQRFDLVSDFPKATLMLGDRNNANHLLIRM DHPEFQRKIAQLFGQNLLFSQFTKHQLLKLLPTNQWLQPIVSEIEVPENWQYRLKEAYGS DFVKLCFDEIKKTNQL >gi|238617817|gb|GG669604.1| GENE 269 271580 - 272659 991 359 aa, chain - ## HITS:1 COG:SP1375 KEGG:ns NR:ns ## COG: SP1375 COG0337 # Protein_GI_number: 15901229 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Streptococcus pneumoniae TIGR4 # 4 352 3 353 355 305 44.0 8e-83 MKIIEVNLPDHSYNVEIETGILNCTGQLVSSVWSERKIALVSDSNVAPLYQERVAGALES VGFTVHNYQFPAGEASKSLGVLADLTRDMAADGFTRDDGVIALGGGVTGDLAGFLAATYM RGISLIQIPTSLLAQVDSSVGGKTAVDLDTTKNIIGSFYQPDLVIIDPETLNTLDRRDLV EGYGEIVKVAALTDGKLWDLVQDINSPEDILANAEELSRLSIQYKADVVMGDEKEGGLRQ VLNFGHTIGHAIEALADGDLRHGEAVSIGMVAITRIFEEKGLTQAGVNQKLIDRLQAVGL PITSPLLDSDAVFDKIKNDKKNHAGHLNLIYLHQIGGPAIKSIPSEGIRDFLNIKALQS >gi|238617817|gb|GG669604.1| GENE 270 272656 - 273672 1083 338 aa, chain - ## HITS:1 COG:TM0343 KEGG:ns NR:ns ## COG: TM0343 COG2876 # Protein_GI_number: 15643111 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Thermotoga maritima # 65 330 73 337 338 291 54.0 1e-78 MIIIIKAGQEHIIDELQQRFGGTHDAFTHHNRVALEGVTEDELNSDERAAAEQIIDNPPK AVQGSRLFHPEDTIVETAHSKIGGDHFTMMAGPCSVESAEHVMKMAAVAKEGGATVLRGG AFKPRTSPYSFQGLGEDGLKYLRAAADAYDLDVLTEVMDQDHVDMIAQYTDIFQIGARNM QNFSLLKAVGKTNIPVMLKRGMSATIDDILNAAEYIAAGGNHNIIITERGIRTFDNKYTR NTLDVGAVPVLQKLTHYPVIVDPSHAAGHTEFVIPEALAGVAVGASGLVVEIHDDPAHAF SDGAQALKPGEYLEMTQKAYAIRDALKTPVQEKSEVEL >gi|238617817|gb|GG669604.1| GENE 271 274710 - 276188 1063 492 aa, chain + ## HITS:1 COG:BS_trpE KEGG:ns NR:ns ## COG: BS_trpE COG0147 # Protein_GI_number: 16079325 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Bacillus subtilis # 12 477 16 492 515 270 34.0 4e-72 MTIEQLKQYADAYPAIPITQQFQVESFDPIAITQAFDNPKHPCFLLTGKPKKTEDGYSFI GFNPVESFTYRNGILTTTLNDGSVSHETTKLQPFIENILRTNQTPKLKDLPPFLGGLAGY FSYDYAKYATTAKLPAVADPMNLNDADLVLVNRVIAYNHATKTVTLSQIIPSKLLIKKYN SVCLELEDLKQQILTITSEQPLPSFSMTPLKLQFSLQEFTEKVAETKQHIVDGDIFQLIL SNPQHAKMTGSLFSVTPTLFKESPSPYQFYFRHGDFETIGASPETLITKRDRTLFTYPLA GTRRRGKNQQEDDQFAYELQHSPKELSEHNMLIDLGRNDLGSVSEFGSVKVTAYRHLLKF ANVMHMGSVVESTAKKDVSAIDIINAVLPAGTLSGAPKISAMQIIGNLENRKRGVYGGCI GYLGFDGDLDLCIGIRLAYRKNDQLVVHSGAGIVADSIAKYEYQEFNNKASAVVNALKET AAKGGVEHALSD >gi|238617817|gb|GG669604.1| GENE 272 276172 - 276783 513 203 aa, chain + ## HITS:1 COG:TM0141_1 KEGG:ns NR:ns ## COG: TM0141_1 COG0512 # Protein_GI_number: 15642915 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component II # Organism: Thermotoga maritima # 4 200 49 243 246 191 47.0 7e-49 MHYLIDNYDSFTYNLYQLIGEISKDPITVIKNDAITAEQLALLNPESIILSPGPGRPEDA GKMPDILKTFLGKVPILGVCLGHQAIAEAYGAKIIHAPKLMHGKPSEVTITKKTVLFNHC PKRFEAARYHSLIIDPQTMPDTLTVTAETADKEIMAVADDSKKVYGVQFHPESIMTDPKV GAQIIKNFIAVVSAQKKMTSPAI >gi|238617817|gb|GG669604.1| GENE 273 276976 - 277557 278 193 aa, chain - ## HITS:1 COG:AGl2490 KEGG:ns NR:ns ## COG: AGl2490 COG1859 # Protein_GI_number: 15891357 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNA:NAD 2'-phosphotransferase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 17 188 3 174 186 117 39.0 1e-26 MFSLTKEGCGSLDRQLTRLSKRLSFILRHHPEKIDIKLDQYGRTNLNVLIRHFNKHYGTP ISQSIITAIIQQSDKQRYAIEGNTIRALYGHSIPVKPLTPPKMPPEYLYHGTTHSAARLI ETEGLKKMDRDFVHLSANQQMAIQVGRRRDPRPVVFRVAAKNAAKNNVLFYPTKSGIWLV DAMPAQFLERVQN >gi|238617817|gb|GG669604.1| GENE 274 278163 - 278744 415 193 aa, chain + ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 1 158 23 181 224 80 30.0 2e-15 MQGWVDSPLTEKGEKQAADAGKKLQNIKFDLAVSSDMMRAIHTLDIVLKNNHYSENIHRE INKDVREIYFGSFEAIDSVTTWNMIGGPLGHFKQADLIKEYGLLKVRDFMHDADPFHYAE TSDQLETRIRKAVATIQTQLSDDQTAIVVSHGTYLRNLATLFSKNQVVREQPKNGSIMTL DVTNDPKVLTYNQ >gi|238617817|gb|GG669604.1| GENE 275 278867 - 279454 614 195 aa, chain - ## HITS:1 COG:SA0826 KEGG:ns NR:ns ## COG: SA0826 COG0681 # Protein_GI_number: 15926554 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Staphylococcus aureus N315 # 5 188 3 183 191 103 35.0 1e-22 MKFLKGLLGIVIPIAIGLALALVIKATVVTVARVDGPSMEPNLVNNERLLVWRHAKIKHL SVIVFDAHGEDPSASKPNTDYVKRVIGLPGDTVSSNNGNLYVNGKKVNQSFISNYQRTTG TGNWDLQTLSKSWAKHPNSVKVPKGNYFVLGDHRSVSNDGRYWGFVPKKKITGVAKTFFW GTDKTKRNNVNKLAY >gi|238617817|gb|GG669604.1| GENE 276 279680 - 280882 952 400 aa, chain + ## HITS:1 COG:BS_ydgK KEGG:ns NR:ns ## COG: BS_ydgK COG0477 # Protein_GI_number: 16077635 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 1 375 1 376 402 214 37.0 3e-55 MATTPSLGKRIWLVFILGTISATGPLSIDLYLPALPEMTRDLQTHASLIQLSLSACLLGL AIGQLISGPLSDKYGRKGPLIVGFLSFGMVSLLIASSHSVYLLIGLRFIQGLAGASGQVL SRAIASDLFSGPLLTKFYSMLSAVNGIFPVISPIIGGYIIKYVEWQGVFILLALIGFIVS IAIWMGIKETLPFASRISGSPINSIIEMFSLLKNTKFVKLVIASGLVYGGLFSYISASSF VFQNYFHMNVANFGFLYAMNGIGIAIGSAIPGLLATRVSESQQIRFVLGSTFMTALALIS SWFLLNNLLTVTILVLLMVFQFGMLFTLTTSVIMNLSLKNSGGISALLGLSQNAIGGIMS PIVGVMGSQTYLPMAISIAGCIGLSLILFLKINSSNQLKQ >gi|238617817|gb|GG669604.1| GENE 277 280966 - 282903 1566 645 aa, chain - ## HITS:1 COG:lin2942 KEGG:ns NR:ns ## COG: lin2942 COG0445 # Protein_GI_number: 16802001 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Listeria innocua # 11 643 2 629 629 871 69.0 0 MKSLRVSDVKQKYRGKNYDVIVVGAGHAGCEAALAAARMGNKTLVLTINLDMVAFMPCNP SVGGPAKGTVVREVDALGGEMGRNIDKTYVQMRMLNTGKGPAVQALRAQADKHAYHAEMK HTMENEPNLTLRQAIVDSLIVEDGVCKGVITNTGAKYFAKSVVIAAGTAARGKIIIGELM YASGPNNSQPAEKLSGSLEELGFDLERFKTGTPPRVDGTTIDYSKTEEQPGDEKPHHFSF ESSDKDYLAVKDQLSCWLTYTNETTHKIIRENLDRAPMFTGVIEGVGPRYCPSIEDKIVR FADKSRHQLFLEPEGRKTEEWYVDGLSTSMPEEVQQQMLHTISGLENAEMMRPGYAIEYD VVAPYQLKPTLETKIVKNLFTAGQTNGTSGYEEAAGQGIIAGINAGRRALGQGPFVLKRN EAYIGVMIDDLVTKGTKEPYRLLTSRAEYRLLLRTDNADMRLTEKGHEIGLISDERYAQF LSKKRAIESEIDRLNSIRIKPSDAVNKFVEAHGDKPLKDGVIASVFLRRPYVDYQTLLQF ISDPEHHLDRHVIEQVEIQTKYAGYIAKAESSVEKMKRMEAKKIPNRIDYEAIDGIATEA RQKLQKIHPETIAQASRISGVNPADIAILSVYIQQGKIAKLKKSV >gi|238617817|gb|GG669604.1| GENE 278 282939 - 284333 1300 464 aa, chain - ## HITS:1 COG:lin2943 KEGG:ns NR:ns ## COG: lin2943 COG0486 # Protein_GI_number: 16802002 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Listeria innocua # 7 464 2 457 457 549 63.0 1e-156 MVLTTTEFDTIAAISTPPGEGGISIVRISGEEALDVAKNVYRGKNLDKVASNTINYGHIV DPSTNQEVDEVMLSIMRAPHTYTKEDIIEINCHGGIVATNRILQLVLSNGARMAEPGEFT KRAFLNGRIDLSQSEAVMDLIEAKTDRSMKAAISQLDGNLSHLIKHLRKDILDVLAQVEV NIDYPEYDDVETMTSKLLREKATDVHKRIVQLLQTAKQGKILRDGLATSIIGRPNVGKSS LLNHLLHEDKAIVTDVPGTTRDVLEEYANVSGVPLKLIDTAGIRDTNDKVEKIGVDRSRK AINSADLVLLVLNASEPLTEEDRQLIEATNKKKRIVVLNKTDLPIKLNLSEIKRLTKAQN IISTSAIKADGLKGLEELISTMFFNEGIASSQNDVVVTNARHIGLLNQAKSALEDVLKGL DEGMPVDLVQIDMTRCWDFLGEITGDSYQDELIDQLFSQFCLGK >gi|238617817|gb|GG669604.1| GENE 279 284544 - 285287 577 247 aa, chain - ## HITS:1 COG:lin2985 KEGG:ns NR:ns ## COG: lin2985 COG1847 # Protein_GI_number: 16802043 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein # Organism: Listeria innocua # 2 246 4 203 206 128 32.0 1e-29 MIIYSGKTIQDAVKQGLAELSLNKDQVEVKVIQQPRNGFFGIGRKQAKIELLRKENTNQT QIKTALNNQPHTESSNNQGIVNPSEIVKEARSEDDLDLDKIAQDLADYLNDVLEAMGFSF TLKLDLKNKHSVYIDIDTEQESRLIGRHGRTINALQNLAQIFVNRSGANNVTVELDTADY RNRRSEALIQLADKTARNAIANGKPVYLNPMPSFERKQIHNALADNDHVITYSTGKEPHR VIVVAPK >gi|238617817|gb|GG669604.1| GENE 280 285533 - 286486 576 317 aa, chain + ## HITS:1 COG:BS_yeaB KEGG:ns NR:ns ## COG: BS_yeaB COG0053 # Protein_GI_number: 16077699 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Bacillus subtilis # 20 310 3 290 290 159 31.0 9e-39 MANINQYDAGRNIIIDRQHRLNKLQEAQKITYANLSAYAVIMTAELVIGYWNHITVLIAD GLNNLTGVCGAAIIITGLKISRRPPDSNHVMGHWQYENIAAFLSATIMFAISIQILVDGV FSVRRFFQGVAVQPNFWSLGVSLVSAATISILAKYNALKGNQLNNQALIASGQDLKSDAW TSFGTFLSIGGAYLGAQWLDGVATIIVGFLILHASILIFRTTIMRLTEGFSPKAIDNYSK TINEIPGVLGVQGIEPRWLGDQIVMKVGVYLADDTRLTKAYSIGEKVEHALMKKYDILDA DVMAYPVSLKNDPNHVD >gi|238617817|gb|GG669604.1| GENE 281 286905 - 287831 936 308 aa, chain + ## HITS:1 COG:lin1775 KEGG:ns NR:ns ## COG: lin1775 COG0039 # Protein_GI_number: 16800843 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 1 302 1 299 302 226 40.0 3e-59 MSRKIGIIGMGNVGAAAAHYIVSTGIADDLVLIDLREDKVTADALDFRDALVNLPWHINI TTNDYAALKDADVIISAIGNIKLQDNANDDRFAELPFTSQQVPLVAKQIKDSGFNGKIVV ITNPVDVITSIYQEVTGLPKKHVIGTGTLLDSARMRASVADKLGIDSRSVIGYNLGEHGN SQFTAWSTVRVLGKPITDIAKEKGLDLDALDQEARTGGYTVFHAKKYTNYGVSTAAVRLA YTIMSDARTELPVSNYREEYGTYLSYPAIVGRDGILEQLQLNLTDDELKKLQTSANYIKT KYAESRQK >gi|238617817|gb|GG669604.1| GENE 282 287898 - 288479 374 193 aa, chain - ## HITS:1 COG:L131778 KEGG:ns NR:ns ## COG: L131778 COG0706 # Protein_GI_number: 15672111 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Lactococcus lactis # 2 189 81 268 269 207 52.0 1e-53 MRKTQEVQPQLKALQKKYSSRDAETMQKLQAEQKKLYAEAGINPLAGCLPMIVQMPILFA LYQAIWRTDILRSGTFFWLQLGHPDPIFVLPVLAALFTFISSWLAMKGQPESNSMTTMMT IGMPIFILIMAVSLPSALSLYWVITNAFQVGQTLVIQNPWKIRREREQKQKEEREHKRAV QRAIKKAKRSKRK >gi|238617817|gb|GG669604.1| GENE 283 288586 - 288783 118 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIAREKFKTTQPSQIPVLCSVIGLLLQADKTTVKLSSDNSTDIFFILFFNVFPHHHSWNQ AALPA >gi|238617817|gb|GG669604.1| GENE 284 288731 - 289111 243 126 aa, chain - ## HITS:1 COG:SPy0246 KEGG:ns NR:ns ## COG: SPy0246 COG0594 # Protein_GI_number: 15674428 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Streptococcus pyogenes M1 GAS # 6 126 1 119 119 109 51.0 1e-24 MWRWIMRKSYRVKKEAEFQKVFETHNSVANRQFVVYTLDKPDQLHFRVGISVGKKIGNAV HRNWVKRRIRQAIFELKPDLRQDVDFIVIARPSTDQMSMRDVKSSLIHVFKLARLLDSNY DGGEKH >gi|238617817|gb|GG669604.1| GENE 285 289152 - 289286 224 44 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227508126|ref|ZP_03938175.1| 50S ribosomal protein L34P [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 44 1 44 44 90 100 2e-16 MKRTYQPKKRHRARVHGFRKRMSTSNGRKVLARRRQKGRKVLSA >gi|238617817|gb|GG669604.1| GENE 286 289796 - 291148 1076 450 aa, chain + ## HITS:1 COG:lin0001 KEGG:ns NR:ns ## COG: lin0001 COG0593 # Protein_GI_number: 16799080 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Listeria innocua # 1 449 1 444 451 435 51.0 1e-121 MLNKDSLWQKLSTEFRKNTTDLTYDTWIKPVTPVDFDGSTLTLSLPSELHRDYWKEQLAP NLIEYAFVITKGNIEPKFILDSDIKKEAQKKEPAKADSTADDQDETFSFSKETHLNPNYT FDNFIIGKGNQMAHAAALIVSEEPGKLYNPLFFYGGVGLGKTHLMQAIGNKRLEDHPETN VKYVTSEAFTNDFINAIQTNRTEEFRREYRNVDLLMVDDIQFFAQKEGTQEEFFHTFNDL YNNDKQIVLTSDRVPQEIPKLQERLVSRFAWGLPVDITPPDLETRIAILKSKAKLDNLTI PNETLSYIAGQINSNVRELEGALSRVQAYSKLKNEPITTDLVYEALKGLKLAKANNELSI MDIQNKVASYFHVTISDLKGKKRMKSIVIPRQIAMYLSREMTSNSLPKIGKEFGGKDHTT VIHACDKIAEVIKIDADIRKEISDIKTALS >gi|238617817|gb|GG669604.1| GENE 287 291342 - 292481 559 379 aa, chain + ## HITS:1 COG:BS_dnaN KEGG:ns NR:ns ## COG: BS_dnaN COG0592 # Protein_GI_number: 16077070 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Bacillus subtilis # 1 379 1 378 378 335 49.0 6e-92 MKFTISRTEFTKALNTVSRAISTKTTIPILTGLKLQATQTGLILTGSDADISIETTIKTD NPDNLLAIESEGAIVLPARFFTDIVKKLPEETLTIEVGENFQTMITSGPSSFTINGLDAN NYPHLPEIETTNSIPLAGDLLKQIISQTVIAVSNQESRPILTGVHFILSDTNFLAVATDS HRLSQRKVILETPINGSFDFVIPGKSLVELSRMIDDNKEDIILSVTENQALFTIGDTLFY SRLLEGNYPDTSRLIPDSHDTRISFDAPELLASIERASLLSHASRNNVVKITVKPETKTV TIYGNSPDVGNVEEDMEPRSVEGNELEISFNPDYMKDALRSFSQSTINLDFTSSLRPFTL TPTEDSDSFVQLITPIRTF >gi|238617817|gb|GG669604.1| GENE 288 292853 - 293083 144 76 aa, chain + ## HITS:1 COG:BS_yaaA KEGG:ns NR:ns ## COG: BS_yaaA COG2501 # Protein_GI_number: 16077071 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 67 1 67 71 83 61.0 1e-16 MKKEIFIDRPYITLGQLLKEESIISSGGQAKWYLREHTVNINDEPDNRRGRKLYAGDNVE VPDVGLFFIRSKQDSE >gi|238617817|gb|GG669604.1| GENE 289 293080 - 294201 656 373 aa, chain + ## HITS:1 COG:BS_recF KEGG:ns NR:ns ## COG: BS_recF COG1195 # Protein_GI_number: 16077072 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Bacillus subtilis # 1 368 1 368 370 379 54.0 1e-105 MKLKDISLHNFRNYIDQTLQFSDGINVFLGENAQGKTNLLEAIYVLALTRSHRTSNEKEL INWQSQTAQLKGTIQKQLGKVPIELDLGTKGKRAKINHLEQAKLSSYVGQLNVILFAPED LSIVKGAPQVRRKFMDMEFGQMSNRYLYNSTQYKKILRQRNRYLRDLQHKIQSDRVYLDV LSDQLSAYGAEIIYQRIQLLKKLEGFAKNVHTEISQGKEALTFLYQTAVPDEQLTSIENI YQNLLKQFADIKEKEIQRGTTLLGPHRDDLKFAINKKEVQSFGSQGQQRTTALSVKLAEI DLMKEQTNEYPILLLDDVLSELDDYRQTHLLTAIQDKVQTFLTTTSLSGVQQELLSNPKI FRIANGKVNLEES >gi|238617817|gb|GG669604.1| GENE 290 294214 - 296157 1577 647 aa, chain + ## HITS:1 COG:BS_gyrB KEGG:ns NR:ns ## COG: BS_gyrB COG0187 # Protein_GI_number: 16077074 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Bacillus subtilis # 13 647 6 638 638 825 65.0 0 MADQKETKKELANEYDASQIQVLEGLEAVRKRPGMYIGTTSSQGLHHLVWEIVDNGIDEA LAGFATKITVTVEKDNSITVTDDGRGIPVDIQKKTGKPALETVYTILHAGGKFGGGGYKV SGGLHGVGASVVNALSEELDVAVTRNGKVYYMDFSRGHVTTPMKVIDHVSDDLHGTKVHF LPDPDIFRETTTFDIKVLTARLRELAFLNKGLRIIVRDMRPEKPTEQDFLYEGGIRHYVE YLDKDKETLLKEPIYVEGMDNGITVEVAIDYSEDYHSTLMTFTNNIHTYEGGTHEEGFKR ALTRVINDYARKNNLLKDNEANLSGEDVREGTTAVVSIKHPDPQFEGQTKTKLGNSDART VTDRIFSDHFSKFLMENPKLARKIIDRGLLASKARSAAKRAREVTRRKSGLEISSLPGKL ADNTSKDPKISELFIVEGDSAGGSAKQGRARLTQAILPIRGKILNVEKASMDRILANEEI RSLFTAMGTGFGDDFDLSKINYHKLIIMTDADVDGAHIQTLLLTLIYRYMRPLIDAGYVY VAQPPLYQVRQGKMQRYIDSDDDLNQFLGTLQPSPKPVIQRYKGLGEMDAEQLWDTTMNP ENRHLLRVESSDAAEANHVFSMLMGDKVEPRREFIEDNATFVENLDI >gi|238617817|gb|GG669604.1| GENE 291 296248 - 298800 2044 850 aa, chain + ## HITS:1 COG:SP1219 KEGG:ns NR:ns ## COG: SP1219 COG0188 # Protein_GI_number: 15901081 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pneumoniae TIGR4 # 20 825 6 810 822 1059 66.0 0 MEVKSLANETNQGGDFPGRITNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRI LYDMNELGVTPDKPYKKSARIVGDVLGKYHPHGDTAVYESMVRMAQTFSYRYMLVDGHGN FGSVDGDGAAAMRYTEARLSKIAMEMLRDINKNTIDFVPNYDGTEREPSVLPSRFPNLLV NGASGIAVGMATNIPPHNLSEVISAIHVLMDNPDATTADLMEVLPGPDFPTGGVVMGKSG IRKAYETGRGSIILRAKVEIEGEASGKQRIIATELPYMVNKAKLIERIAELARDKRIEGI TDINDESDREGMRVVIDVRRDASAEVILNNLYKLTLMQTSFSFNMLAIVKGTPRILSLKE ILQYYLEHQVEVITRRTKYELQKAQARAHILEGLRIALDHIDEIIKIIRGSQTGEVAKNQ LITGFGLSDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKDIEDFKAILSSRDRVNQIIY EELLEIQKKFGDERRTELLVGEVLSLEDEDLIEEEDVIVSLTHNGYIKRLPTTEFKAQNR GGRGVQGMGVHDDDFVEQLVSTSTHDVLLFFTDAGKVYRMKGYEIPEYGRSAKGIPIVNL LNINSGEKIEAVINVSDRKNDVQKDLLFVTLYGTVKRTPVSDFANIRSNGLIAIHLKEGD QLINALIIDQNQNVIIGTHLGYAMSFNASDVRSMGRSATGVRGIRLRENDYVVGADVLNP DSEVFIISEKGFGKRTPAADYPIKGRGGKGVKTANITEKNGPLSGLTTVSGNEDIMLITD KGVMIRFGIEDVSQTGRSTLGVHLIRIDEDSKVSTMAKVEKQEDEASSDASKGNLMSSNG DTSEDSDSTN >gi|238617817|gb|GG669604.1| GENE 292 298947 - 300056 1136 369 aa, chain + ## HITS:1 COG:L78730 KEGG:ns NR:ns ## COG: L78730 COG1304 # Protein_GI_number: 15673234 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Lactococcus lactis # 7 366 20 383 383 417 60.0 1e-116 MVVVNGYKQNENEKKLNVLNLDQLEKQAKEIIPTGGFGYISGGSEDEWTLRENRRAFTHK QIVPRALTNIEKPELETNVFGIPLKTPLFMVPAAAQGLAHAKGEVDTAKGVAAVGGLMAQ STYSSTSIADTAASGNGAPQFFQLYMSKDWDFNEALLDEAKRAGVKGIILTVDATVDGYR EADIINNFQFPIPMANLTKYSEGDGQGKGIAEIYASAAQKIGPDDVARIANYTDLPVIVK GIESPEDALYAIGAGASGIYVSNHGGRQLNGGPASFDVLEDVAKAVNGKVPVIFDSGVRR GSDVFKALASGADLVGIGRPVIYGLALGGAQGVQSVFEHLDHELEIIMQLAGTKTISDVK NAKLLNIRY >gi|238617817|gb|GG669604.1| GENE 293 300289 - 300585 505 98 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227508136|ref|ZP_03938185.1| 30S ribosomal protein S6 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 98 1 98 98 199 100 4e-49 MEEKKYEITYIIRPDIEEAAKSSLIERFDKIVTDNGAKILDSKDWSKRRFAYEIGGYNEG TYHIITLTSDNDTALNEFDRLSKINDDILRHMIVVRDD >gi|238617817|gb|GG669604.1| GENE 294 300621 - 301142 372 173 aa, chain + ## HITS:1 COG:lin0038 KEGG:ns NR:ns ## COG: lin0038 COG0629 # Protein_GI_number: 16799117 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Listeria innocua # 1 173 1 179 179 162 51.0 4e-40 MLNRAVLTGRLTRDVDLRYTQSGTAVGTFSLAVDRQFTNQKGERDADFINCVIWRKSAEN FANFVHKGSLVGIDGRIQTRNYENQQGQRVYVTEVVVENFALLEPRSARNNNASNQQNGN APQQNNGNSNPFDNNNSNPNSSSNNNGGNKSNPNDPFANSGDSIDISDDDLPF >gi|238617817|gb|GG669604.1| GENE 295 301183 - 301419 387 78 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227508138|ref|ZP_03938187.1| 30S ribosomal protein S18 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 78 1 78 78 153 100 2e-35 MAQQRRGGRRRRKVDFIAANHIEYIDYKDVDLLKRFVSERGKILPRRVTGTSAKNQRKLT IAIKRARIMGLMSFVAED >gi|238617817|gb|GG669604.1| GENE 296 301617 - 303629 833 670 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 [Acholeplasma laidlawii PG-8A] # 38 669 38 667 818 325 31 1e-109 MKNWFSRNSGELPPFVHNRRLRRIMLFIALIVIYGVVISFLYNIVASAILVIISIMGLIY TIVMMNEMSTDTNRYISDLSYRIHRGEQESLLEMPIGVMILNENGLVEWTNPYFTRYFNN ENILGKRIEDVDHDLQQLMMKYGDSDEFHTVTWRDHKFTMLIQSEYHSIYMLDITRYANL EERYEEEQISVGQIFLDNYDEITQSMTDQEISNLSNYVTNELATWSKKYGMYLKQIDDDH FFLLAYAKSLTQIENDKFNILDIVRESTSKQNFPLTLSIGISYGEDDLNSLADQAQSNLD LALGRGGDQVVVKSLDGTARFYGGKTNPMEKRTRVRARMISQALNELMGDADQIFVQGHT RPDMDSLGACMGIRRIAQMNNKKCWIVLDKEKVHSDIQRLLEAAKKYPEISDAIITPAEA LSKVTDSSLLIMVDHSKPSISISPDLYQRMTQKVVIIDHHRRGEEFPENPMLVYIEPYAS STCELITEMFEYQPHEEEPINRIEATAMLTGIFIDTQSFSMRTGTRTFDAASYLRSAGAD SVEMQQLMKENIDNYLQRNHLISMVEFFHKDMAMIVGEEDRVYDPVTAAQACDSLLTMSG VDASFIITKRSDDKIGVSARSTGSINVQIIMERMGGGGHLSSGATQIEDKSIAEVKQLLL ETIDYIDDNE >gi|238617817|gb|GG669604.1| GENE 297 303667 - 304119 738 150 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227508140|ref|ZP_03938189.1| ribosomal protein L9 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 150 1 150 150 288 99 4e-76 MKVIFLEDVRGKGKRGEVKEVPDGYAQNFLIKNGKAKAASRQAMSQLKGQQRAEQKREEE ELEEAKAVKTKLEDDKTVVELKAKSGTDGRLFGSIPSKQIASALDKQYGIKLDKRKIELG EPIKVAGYTNVPVKLHSEVTARIRVHVSEK >gi|238617817|gb|GG669604.1| GENE 298 304280 - 305659 1190 459 aa, chain + ## HITS:1 COG:lin0047 KEGG:ns NR:ns ## COG: lin0047 COG0305 # Protein_GI_number: 16799126 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Listeria innocua # 1 457 1 446 450 509 59.0 1e-144 MNNDLVNQVPPQNIEAEKAVLGSIFLSTDALIDAMEYLDPNDFYKHSHQIIFQAMVKLND DDQAVDGITVTDTLKDQNNLDDVGGYQYITELANAVPTAANVTYYAKIVKDKAILRRLIQ TATNIVTDGYNTDEDVTTVLDNAERDIMNVAEDRNQSGFKAIKDVLNSAFNKIDELSQEG ETVTGLSTGYPELDKITTGLHNDELVILAARPAVGKTAFALNVAQNVGTKTDKTVAIFSL EMSAESLVDRMLCSEGSINANHLRTGQLTEDEWQNLVVAMGSLSRANIFIDDTAGIKMSE IRAKCRRLAKENGNLGLIVIDYLQLIEGGQQENRQQEVSYISRQLKKLAKELHVPVISLS QLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYERDDDDDSDSQGADDENDV GEVEVIIEKNRSGPRGTVKLLFVKSYNKFSSISYAQDGG >gi|238617817|gb|GG669604.1| GENE 299 306094 - 306810 696 238 aa, chain + ## HITS:1 COG:lin0315 KEGG:ns NR:ns ## COG: lin0315 COG0745 # Protein_GI_number: 16799392 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 236 4 237 237 355 78.0 5e-98 MAKKILVVDDEKPIVDIEKFNLTKEGYEVFVAYDGEEALKQVNEVDPDLIILDLMLPKID GLEVAREVRKTKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ GTSSGNSSEGDENKDIKIGDLVIHPEAYSVSKRGENIELTHREFELLHYLAQHIGQVMTR EHLLQTVWGYDYFGDVRTVDVTVRRLREKVEDSPSHPTWLVTRRGVGYYLRNPESDQQ >gi|238617817|gb|GG669604.1| GENE 300 307028 - 308704 1345 558 aa, chain + ## HITS:1 COG:lin0316 KEGG:ns NR:ns ## COG: lin0316 COG5002 # Protein_GI_number: 16799393 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 26 556 89 610 610 483 47.0 1e-136 MITELSRSNKTLANRRIKTILNDSDSSNAAQIQVIDNKGTIRGTNQVNNQAVVGQKTTDN DVKNAIYNSHKIEKNTYDSSSNTRYYTLISPLIKSSGNSSTLVGVVYTKANLDTVYRNIN SITVIYLFAASIAIILGLLISIVISRAITRPIEEMKKQTIRIARGDYSGQVHVYGNDELG QLASAVNNLSVRVEESHESTESERRRLDSVLANMTDGVLATDRRGNVIIINETAASFLDL DENQAMGKSILDVLDIRKDYSLRDLLEKPDELILDFSSDDHSLILHAHFSLIQRESGFIS GLVCVLRDITEQQRIDQDRKQFVSNVSHELRTPLTSVRSYIEALHDGAWKDPKLAPKFLK VTQDETDRMIRMINDLLTLSRMDSGTQKMEVELVNINELFNYVLNRFDMILKKDEHPEKM YTIKRYFTKRDLWVDLDTDRFTQVLDNLMNNAIKYSPDGGVITCRLYETRNKVILSVSDQ GLGIPRKDIPHIFDRFYRVDKARSRQQGGSGLGLAISKEVVEALHGQLWAESVEGKGSTF YIALPYEPLEEEDLWDEV >gi|238617817|gb|GG669604.1| GENE 301 308694 - 309995 877 433 aa, chain + ## HITS:1 COG:lin0317 KEGG:ns NR:ns ## COG: lin0317 COG4863 # Protein_GI_number: 16799394 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 12 423 12 428 440 66 20.0 8e-11 MRFSKYLIPIALTIAVIISLTLSVVIWTNPANYKNRQNSSQNTQNEEITKPKRYVYAPTQ AIHTDSNGNQTILVNRLVNSVAEIQKTMHGYKNVHLKTLSIKSQDKYFQIANRPNSIMLN YVSPVSIRVISDVTNKYFEKLPNHQVSRIVLPTNNSTRIYLLNDKNFAVYQIKVKKHSLK NLNKVLNMNIRRVPASLQLFNGQPMIYVKSQIQMQPYKYLIDRQSEDYYVSRLLNNRDSQ SNVTVKRRKNLVTYSDQNTLQLAFNSRTRMGTFSDFRNNSDQQSVTSVLDDSYEQLVDLG LPLDSVRFFNYDTNSRTVSYRTFVEGFPIYRANGFGTISTQTLNANAKRLQFSLDNPEVP IPSKQGYSTLPATETAIRRLIAKGYHAKDIRDLRIGYGWQKDKSSQLLINLIPDWYVNYK GTWRSYSSLINRY >gi|238617817|gb|GG669604.1| GENE 302 310018 - 310854 720 278 aa, chain + ## HITS:1 COG:BS_yycI KEGG:ns NR:ns ## COG: BS_yycI COG4853 # Protein_GI_number: 16081090 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 256 1 265 280 71 23.0 2e-12 MNFRRIEIIFLVTFIAIDIFLFGMFEQNMNMQTENVSQGDSDSKIIKEMKDDQIKVGSLS KKKNFAYYLSGTQNDTLRNQMGQLLNQTPHYVGYELDSEFKDPVKVNKDNPQQSINKLLM DPTFVAFGDQYQYSKDLSTPRSIVYIQKAMGGLMYSTEAQIRFTLNGRYQIVSYTQSYLQ DIKSLREKSETISETRALIWLYQYNEIPNNTKVAWAKLGYTKLLSIDDDRVFIPTWIIAI KPQNSPQVQLKKINAFTGGIIKETNENLKNSQSISGVN >gi|238617817|gb|GG669604.1| GENE 303 310875 - 311678 561 267 aa, chain + ## HITS:1 COG:SP1225 KEGG:ns NR:ns ## COG: SP1225 COG1235 # Protein_GI_number: 15901087 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Streptococcus pneumoniae TIGR4 # 1 267 1 269 269 307 57.0 1e-83 MENDDMQISVLASGSTGNVTYVETPQHKILLDAGLSGKKIANLMRSIGRDINDVDTLLVT HEHSDHRQSVGVLARKYDLNVYANQGTWDAMRSRIGKIPEEEINIFPPDTVMDFGDIDIE SFSVSHDAAEPQFYVFHHRNKSFVVLTDTGYVSDRMEGVIKDADGYLLECNHDIEMLENG EYSWPLKQRILGDQGHLSNEDGANTMLDVIGHRTKKIFLGHRSQHNNMKSLCHLTVASIL ADHDYGVGKDFKLYDTEPETASSLMII >gi|238617817|gb|GG669604.1| GENE 304 311766 - 313028 1228 420 aa, chain + ## HITS:1 COG:lin0320 KEGG:ns NR:ns ## COG: lin0320 COG0265 # Protein_GI_number: 16799397 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Listeria innocua # 31 411 138 497 499 285 48.0 8e-77 MAQKNGFGKIIVTAVIAGALGGGITYGGMSYFNNSDSGTGTSLVSTNKNGNTKISNVKVN LNTQAEKAFNATKNTVVSVINLQRESSSDNTLAGILGGLEGGSGSSGSSKKSGELEASSE GSGVIYKKSGNTAYIVTNNHVVSGANALEIILSDGSKASAKVVGKDAVTDLAVIKITSNK VKDVAQFGDSDNIKVAEPVLAIGSPLGSQYATSVTQGIISAKKREVPQTSESGAQVGNAT VIQTDAAINPGNSGGPLINFAGQVVGINSMKLAQDQQGTSVEGMGFAIPSNEVVTIINQL IKSGQVVRPALGIGYTDLSNISEEQQRSVLKLPKSVTQGAVVLKVNSGSPAQRAGIKKYD VITELDGTKITQQSQLRDVLYKHKIGDKISVTYYHKGNKETGSITLSQKATNKVLSEASK >gi|238617817|gb|GG669604.1| GENE 305 313584 - 314069 429 161 aa, chain + ## HITS:1 COG:lin0321 KEGG:ns NR:ns ## COG: lin0321 COG1576 # Protein_GI_number: 16799398 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 161 1 159 159 197 66.0 8e-51 MRLNIKLVVVGKLKEKYFKQGIAEYAKRLSRFCKFQIIEVSDEKAPESLSQAEMNEVMNK EGSRILDKIKDREYVYALAILGKERSSEQFAKEIADLTTYGHSDITFVIGGSLGLSKHVL DRANTQISFGKFTLPHQLMRLVLTEQIYRAFMINEGSPYHK >gi|238617817|gb|GG669604.1| GENE 306 314094 - 314675 588 193 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988990|ref|ZP_01820390.1| hypothetical protein CGSSp6BS73_02415 [Streptococcus pneumoniae SP6-BS73] # 7 192 7 192 192 231 56 9e-59 MQTAIDIFNAIQRDPQNKIYTDKGVLPLYHIEPNAKILIISQAPSRKAQESMVFWNDPSG DRLRDWMGIDKDRFYHSGKIAVMPLDFYYPGKGIHGDLPPRKGFADKWHQPLLSLMPNVQ LKLLIGQYAQKYYLQKNRQKNLTETVRCFEDYLPEYFPLVHPSPLNYGWMKQHPWFIKEV VPELQIRVKKLMN >gi|238617817|gb|GG669604.1| GENE 307 314823 - 315020 78 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSKSNIVWGASLAEKYPLNLMQFVLSEEDNKQLPISCTVNYVGKDSSLCNFRERSFFVVS QIIPF >gi|238617817|gb|GG669604.1| GENE 308 315030 - 315617 430 195 aa, chain + ## HITS:1 COG:SP0719 KEGG:ns NR:ns ## COG: SP0719 COG4721 # Protein_GI_number: 15900616 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 14 182 3 176 186 130 47.0 2e-30 MLIIIWKGRNIVKKKFHLQDVILIALIAIAFGAIFVGTDWIYNALYLVIGPFANEALFGL WIMAGPLTMYLVRVPGSAIIGETLGAAAEVLFGGTFGAAALISGIVQGFGSELGFTFLRY RNWGWASLLTSSITTTVVAFGYELFRLGYVKYSVPMIIALFTVRLISDIVFGAVLVKMIF SLVERSSVLHFNVSK >gi|238617817|gb|GG669604.1| GENE 309 315772 - 317157 1157 461 aa, chain + ## HITS:1 COG:ybbX KEGG:ns NR:ns ## COG: ybbX COG0044 # Protein_GI_number: 16128496 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Escherichia coli K12 # 1 455 1 452 453 459 48.0 1e-129 MEYSLVITNGHIVTPTKVVNADLAIKGGKIAAIGSGLADQADKVIDANGQIVLPGMIDSH VHINEPGRSDWENYHTGSQALAAGGTTTMLVMPLNALPARTTGEEFKRQKEIAEHKSYVD FGLYGGLVPGNLTEIQKMADEGAMGFKAFMATTGSDLPGDFKNVDDYQLLKGMQAIGKTG LPILVHAENAAITDGLAAEKIAEGKTDIQDYVDSRPPFVEVEAVRRAIYLAKQTNVHLHF VHLSTPESVDQVTQARQNGQNVTCETCPHYLILDRNQFEKIGPLAKCSPALRDPEIVKGL WKKVFAGQVDTIGSDHSPAPMSMKESPEHNIFDIWGGVSGCQNNVDLLYDEAVKKRGLPV TDFVKLTAETPATLFGIVNKGKLQVGYDADITLLDPNQSYVLKTKDLYYENKISAYTGFK INDRVTTTILRGQIIYTLKQGFVGQPTGRFLTKQRAGVESL >gi|238617817|gb|GG669604.1| GENE 310 317154 - 318476 1005 440 aa, chain + ## HITS:1 COG:BS_ywoE KEGG:ns NR:ns ## COG: BS_ywoE COG1953 # Protein_GI_number: 16080700 # Func_class: F Nucleotide transport and metabolism; H Coenzyme transport and metabolism # Function: Cytosine/uracil/thiamine/allantoin permeases # Organism: Bacillus subtilis # 12 431 17 467 490 113 24.0 6e-25 MNTSKALSISPDLKPRTQADRHIGQLSYMAMWLGDGFNIGNVTLGSSIVVAGVATMNLLQ TILAAGMAIAIITIIFVLNDHFGYYTGSPYVIQLRMTFGILGSKLASLLRGIPAIVWYGF QSWTGGLALNQIFKITSGYDNPATFFVALLVVQTLISIRGFKSIKVVATWISLVMAVLLI GMLIYLVTQRTAAFSNRMINVKGTWGPIFWGFVVAFLGNYTAVFESAADYSRELQAGLSN KRRAALYFLPIFIAYGITVLTGALLAVVTGISSPVHAMAHLFNNNLVTVVVSAFIVLGTI TTNLVANIIPPTYVLNAWFNLSERKSLIIVALLASLSFPWLLVQDSSSTGLTLFIKTYSA FLGPMTAIILNEYYVKRRKRVDVADLYNNQKVKASIQPIIALFVGAALALMGVNLSWPIG FVTSWLVLWLLGYDKRRIQE >gi|238617817|gb|GG669604.1| GENE 311 318581 - 319390 551 269 aa, chain - ## HITS:1 COG:no KEGG:LVIS_1825 NR:ns ## KEGG: LVIS_1825 # Name: not_defined # Def: D-alanyl-D-alanine carboxypeptidase # Organism: L.brevis # Pathway: Peptidoglycan biosynthesis [PATH:lbr00550]; Metabolic pathways [PATH:lbr01100] # 1 126 11 136 392 70 30.0 9e-11 MVILVTTSLFSAFLFGTIKANAQTTGYQVISNQSASRVAPYHNANNESHYIWNLSHTIKL HNLENFSTTTWTLERVAILSHNGKKAVYFNVTDRTGQFSGWVWHGFLKGGPYQYHEDSNA DGLNLSDPANTRDFSMLGNYIYGKLSADGYLAQPDLMKLTQYYGTRHTNNLNTPFKDAIM SENMTLDPTNLVGIFEYPVSDLTKMIDPNTGDILLEDTGNGELGNTVTAQIENFLKANHT TRYGLWFNLSGSASNGTLSLDLVYMGIKN >gi|238617817|gb|GG669604.1| GENE 312 319487 - 320077 310 196 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1804 NR:ns ## KEGG: Lbuc_1804 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 190 52 241 241 303 80.0 3e-81 MGSAVWTASAVNYSHWFNVNVGVLLFIIGFLNTVTNQILIKYWDWPRFIGEIAYVCFFSY FVSLFVNLLNSLGIGTLPIVIRAVLSCLGIVFFCTAISLYQRANILMHPNDDTTNILRFF YLRKSAVAAQLLDFVPPIAAMIISFAVTKNLYAVNIGTIFSILFNGLIIQTADKYIWPGL KHNFKTLDQDSSKTDS >gi|238617817|gb|GG669604.1| GENE 313 320394 - 320795 353 133 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0096 NR:ns ## KEGG: Lbuc_0096 # Name: not_defined # Def: CrcB-like protein # Organism: L.buchneri # Pathway: not_defined # 5 131 6 133 133 138 58.0 6e-32 MKVDWYRIGQFSSVFIGGMIGGVARYEVGNWLSANTFAGTTFVNVVGCFFLTVTIYGLDL VIDLPEWIILGFGTGIIGAFTTFSTFALLFAQNIQQQPIETLWFLAINLIGGFITAILGY LTARLMDRGKKIW >gi|238617817|gb|GG669604.1| GENE 314 320789 - 321148 197 119 aa, chain + ## HITS:1 COG:SMc01274 KEGG:ns NR:ns ## COG: SMc01274 COG0239 # Protein_GI_number: 15965143 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Sinorhizobium meliloti # 3 118 4 125 125 62 36.0 3e-10 MVIVWVALGAGIGAIVRYLITIIGKHYWPKLPLATLIINVVGAVIAGFLGGVQISGTGSL FLLTGICGGFTTFSTFTTDTFVLLRNRRWLTACAYYFGTIGLGFLAVYLGLWLGQLMVS >gi|238617817|gb|GG669604.1| GENE 315 321203 - 322066 442 287 aa, chain + ## HITS:1 COG:lin1219 KEGG:ns NR:ns ## COG: lin1219 COG1284 # Protein_GI_number: 16800288 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 17 285 8 276 281 217 43.0 2e-56 MKGTILITSKQLVILKNGSLIILGAFIYAIAINDFLIPHQIGEGGVTGLTTIGYYALHIP PFLTNLFLNGFLLVIGFRFLDQKTVWYSLWAVLWISIFLKLPRLLQYHTSQTIIPAVAGG VLMGVAMGIIFRGEGTIAGSTILAKIMNRYFGMMTGTAMLLFDLIVAIPSGFVIGLQNMI LTVIELYVSAVVLNNLLSRFGAKKSVTIITNQTDRVTAILSEKLKQGITLVDAKGYYHQE KRPMIYIICTKPQLAEIVPLISEIDPKAFVVVEDVHSVNGKLLDKIL >gi|238617817|gb|GG669604.1| GENE 316 322226 - 322963 227 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 7 240 4 238 242 92 33 7e-17 MGRLDNKVAIITGAAKGIGLSCAQRFVNEGARVIGTDVDEETGRENISKLGDNAIFIRHD VSKEEEWKKVFAEAEKRFGKVDILVNNAGILEFNNAEEIDGDMWHKILSVDLDGVMWGVK QAIPAMKKNGGSIVNISSIAGLIGIPNLYAYNAAKGGVRMLTKSAALYCAEKGYKIRINS IHPGYVHTPMVDKYPEMRHSLEALHPVGRLGEPEEITNMALYLASDESSFSTGSEFVVDG GYTAQ >gi|238617817|gb|GG669604.1| GENE 317 323180 - 324163 945 327 aa, chain + ## HITS:1 COG:BS_iolS KEGG:ns NR:ns ## COG: BS_iolS COG0667 # Protein_GI_number: 16081029 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Bacillus subtilis # 4 312 2 310 310 332 49.0 8e-91 MTQKLTKIGKTDILSTPLGLGTNAVGGYNLFPDLKDETGLEIVRAGLENGITLLDTAYVY GLGHSEELVGQAMKDFDRSHIILATKGAHDFSTGEEVIKNDPKFLTEQVEASLKRLKTDY LDIYYIHFPDKTTPKAEAVGALQRLREQGKIKAIGLSNFSLDQIKEANADGYVDVVEDEF SLLHQDNTQTMMPYLKANQISFVPYFPLASGLLTGKYDQAVSFAGDDIRSQIADFKKPRF DEALKAIDRIRPVAQAYDATVTQIVLAWYMQNPLISVVIPGAKRPTQVINNAKAMAIDLT KDDYQKIDDAFSWFKDEESGKSLADPD >gi|238617817|gb|GG669604.1| GENE 318 324273 - 324899 523 208 aa, chain + ## HITS:1 COG:mll0243 KEGG:ns NR:ns ## COG: mll0243 COG2085 # Protein_GI_number: 13470516 # Func_class: R General function prediction only # Function: Predicted dinucleotide-binding enzymes # Organism: Mesorhizobium loti # 1 208 1 209 231 127 41.0 1e-29 MKIGFIGSGNIGRNLARLAVKNGYDVIMSNSRDPETLNDLVSELGPHAKAAWAKDAAEQG DLVVVTIPLKNYRQVPVRPLKGKTVIDTMNYYPSRDGHISELDSGSTTTSELLQAHLPES KVVKAFNSIIAGELISTSLSESNPNRRALPIAGNDSKAKETVASLINQFGFDVYDAGSLH EGFRFQNGTPAYVIRANKNQLIAALKKA >gi|238617817|gb|GG669604.1| GENE 319 324986 - 325516 514 176 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0120 NR:ns ## KEGG: Lbuc_0120 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 173 1 173 176 147 53.0 1e-34 MYQFISQIRKYIWLESIVYIIFGLFFLFEPEATINVFIAVLSSFFALFGIINLISWFVQR HKGDELDYSLPVGIFQLILAILILIFAKPILAALPLVIGIVLILVGLIQVIDAIGHREFV NVSPLPFIMYGLVLIVLGSVLVFHPFGTVLFVLQLFGAMLVVTAIVEVVGAWKWRA >gi|238617817|gb|GG669604.1| GENE 320 325706 - 326458 422 250 aa, chain + ## HITS:1 COG:CAC0144 KEGG:ns NR:ns ## COG: CAC0144 COG1489 # Protein_GI_number: 15893439 # Func_class: R General function prediction only # Function: DNA-binding protein, stimulates sugar fermentation # Organism: Clostridium acetobutylicum # 8 229 9 226 230 169 44.0 5e-42 MQYPNFHLARFIDRPNRFIAHCRLIETGEIVTVHVKNTGRTTILQPNVTTSLVESHNHAR KTKYDLVAAKKYDRFWINIDSQAPNKIVKDGLANNDIKLPGINQITQVTPEVPFLDSRLD FSGIGDHQKNFFLEVKGVTLENGGIAAFPDAPTTRGLKHVKTLQKALDKGYLSYLLFIIQ MEKIKAMTIDIDIFEPLAFEISKAQKRGVHVIAYDCRITPDSLTLNQPVPFDLNQKFISD GLPSSIQKRT >gi|238617817|gb|GG669604.1| GENE 321 326481 - 327512 761 343 aa, chain + ## HITS:1 COG:L121175 KEGG:ns NR:ns ## COG: L121175 COG1028 # Protein_GI_number: 15674232 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Lactococcus lactis # 5 337 2 334 339 290 44.0 3e-78 MLQTSKQEPIDSPFNRTTTAERVMKGVDLKGKNVIVTGGYSGIGLKVTEMLTQAGAHVIV PARTVSKALPVVEHLKNAELGLLDLMDPDSIDRFAKGFLASNRQLDLLVECAGIMFPPLK RDSRGNESQFSTNFLGHFQLTAKLYPALKKAGHSRVILMSSRAQSWNGVDFGDPNFNRRK YDPRTAYAQSKAADALFAVELNKRGQKNGVHAFAVHPGLVPGTELSRYVNHEPLKRASSF ALNQLELTHIINAGHSIKARFHRQSEYDYFKTVSQGAASTLWAATSDQLTERGGVFIEDC NISHAVSADSQSKVGVRPWSIDTDDAAKLWHLGEKLTETVFPI >gi|238617817|gb|GG669604.1| GENE 322 327674 - 328366 471 230 aa, chain + ## HITS:1 COG:L1007 KEGG:ns NR:ns ## COG: L1007 COG0584 # Protein_GI_number: 15672046 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 1 225 30 273 281 130 34.0 3e-30 MLKKTLIFGHRGYPHKFPENSLAGFKYAINHGIDGLEFDVHLTKDNVPVIMHDEKIDRTT NCAGEIRSYTFSELRQFQLSDGQRVPTLKELLDLADKQPVHLNLEFKTNEIHYENIEKIV LDMVKNYDLVYPVIYSSFNLDSLKIAYKIDPTQQYCFLSEHDIKNPRELVTKEHLVGLHL SHYVPMKNIKERIWTVDDPKIQKHLFAQNVAGIFTNNFEAAEKVQSGSLA >gi|238617817|gb|GG669604.1| GENE 323 328795 - 329886 721 363 aa, chain + ## HITS:1 COG:BH1076 KEGG:ns NR:ns ## COG: BH1076 COG3839 # Protein_GI_number: 15613639 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Bacillus halodurans # 3 359 4 364 378 335 48.0 7e-92 MSISLRNVRKDYDQQTKVLESVSAEVQTGEFFVIVGPSGCGKSTLLRMVAGLTPITDGEV RINNQVVNELPPKARKLTMVFQNYALYPFLSVWDNVAFGLKARKLSQSDIQHRVDNALKM VSLSDLSKRKPRELSGGQRQRVALARAVASDADICLMDEPLSNLDAQLRIKMRQEIYNLQ RKLGLTLIYVTHDQVEAMTMADHIMVLNDQHVQQIGTPSEIYQHPANEFVAQFFGTPQIN ILPAKRSTQNNHILTFATNNMQVALNEEIPIDSLRIGVRPDELTVARAESVDSNAVVKNT EFLGNETIIYATLNSGDDVRAVLPGQVSFRGYEPIKIGIGSHLLFFDNDGKQIALTKEEA VHA >gi|238617817|gb|GG669604.1| GENE 324 329879 - 330841 959 320 aa, chain + ## HITS:1 COG:BH1077 KEGG:ns NR:ns ## COG: BH1077 COG1175 # Protein_GI_number: 15613640 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Bacillus halodurans # 17 320 11 314 315 254 46.0 2e-67 MLKSPATHSSTAPVAADHTKSKAEKSEAGFWLNAKDKYYAWIFLGPSLLILSVFIFYPMF RTLYLSLFLTNTVGKPTVFVGLSNYINLLTSADYLSSLGVTMVYVLAVTAITIVLGLVLA NYASKQLAGIGIFRTLFSATMGVSVSVAAIFWLFIFNPSTGFLSLVSTWLHLPQINWLTD PVWAMLAVIITTVWMNLGFTFLILLGAMQSVPTTLYEAASIEGATPRYQLFHITIPMISP TLFFVSIITLIEGFKSFGLIDLMTKGGPTNATNMLVYRIYKDAFYSGNYAQASAESLILT VIIAIFTLIQFKVLEKRVNY >gi|238617817|gb|GG669604.1| GENE 325 330841 - 331671 635 276 aa, chain + ## HITS:1 COG:BH1078 KEGG:ns NR:ns ## COG: BH1078 COG0395 # Protein_GI_number: 15613641 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus halodurans # 8 276 2 270 270 225 44.0 7e-59 MEIVAKQKLSHKILNYVLLIILTVVVLGPFLIGLWTSLLPTMDIAKGNFLSLHISLTNYV DAFTQTPILQYLGNSLWISIVTTIAQLIFCSMSAYAFVFLKFKGRKVLFILFLATMMLPF EAEIIPNFMTIKAMGLLNTYSAMIVPFLTSAFGTFMLRQSFMQMPDELKEAADIEGLGHF QFYWKIVMPYNRISLITLGAYSFLGAWNQYLWPMLTTFSNAFRPVQNGLRQLQSEETFND WGMIQATAAIVVIPTLIVLFVGQHYFKSGMNEGAVK >gi|238617817|gb|GG669604.1| GENE 326 331668 - 333038 1361 456 aa, chain + ## HITS:1 COG:BH1079 KEGG:ns NR:ns ## COG: BH1079 COG1653 # Protein_GI_number: 15613642 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 38 454 49 459 459 246 32.0 6e-65 MIKKLAAFLRAHILPAIAVVVVVVGAVVFTSAHKQTSAKAGRTPVVLWHEMGGPAEVALD QMVDKFNKSQSKYEVIPQYQGAYDEAVQKIIQSHGSSASPALFQSFDISTAQMMHSKYTT PVQKFIDEDNYDVSDISPVARSFYSNKGKQLAMPFNTSQPVLYYNASLLKKYHITPPAKS PSYSDVTRVAEQLYKRSHHQVKGMTMEIYGWLMEEALANAKTSLVNHGDGHVGNPTKIDL NNPTTVKYLKWIRTNIKSGDFVNYGSGASAETNEIAAFLAGKLGIFVQSSAYIGQLTTGN KNKLGISYFPHPNGQKANGVGIGGAALWISNDKPTKVQKGAFEFIKYAERPDSQANWQKA TGYLALNSQSQSQPALKSLYAKQPEAKVPGEQLAAAKPNDTNSGILMEGMQLTREMEETA METVYDGGSIPKALSTASQGMNTNLKTTNRANGDYK >gi|238617817|gb|GG669604.1| GENE 327 333119 - 333811 573 230 aa, chain + ## HITS:1 COG:L1007 KEGG:ns NR:ns ## COG: L1007 COG0584 # Protein_GI_number: 15672046 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 1 228 30 276 281 134 34.0 2e-31 MTNETLIFGHRGYPYKFPENSLSGFEYAIEHGVDGLEFDVHLTKDNVPVVMHDEKINRTT NGRGKIREYTYQELQQFQLENGEAIPSLKDLLSLARQKPVYLNLEFKTNKIHYPNIEQIV LDMVGNYDLAHPVIYSSFSLQTLKDAYRIDPNQQYCLLSNHILRHPRELMIDAHLSGLHL SHYQPLRNIKERIWTIDDPKKQRALLADHVAGIITDNFEMARDVKSSVLV >gi|238617817|gb|GG669604.1| GENE 328 334098 - 334337 118 79 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508171|ref|ZP_03938220.1| ## NR: gi|227508171|ref|ZP_03938220.1| hypothetical protein HMPREF0496_0334 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0519_1111 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0519_1111 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0496_0334 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 79 1 79 79 111 100.0 2e-23 MYKINKFDKIKGFYRSSEDGKQFSYYLQTELQKQLKKHATMEDKSFSKALEDLLLDHYLI DQEIKQAYNEGYDKRNLLK >gi|238617817|gb|GG669604.1| GENE 329 334386 - 334532 130 48 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508172|ref|ZP_03938221.1| ## NR: gi|227508172|ref|ZP_03938221.1| hypothetical protein HMPREF0496_0335 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0335 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 48 3 50 50 71 100.0 2e-11 MPNKEELKTVRIASSILKDIKIIAVNDHKTIQEVVEKALTRYIKENGY >gi|238617817|gb|GG669604.1| GENE 330 334855 - 335700 604 281 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1936 NR:ns ## KEGG: Lbuc_1936 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 121 271 152 295 301 70 35.0 9e-11 MKRTAGLIAIFSFTLFVTLAFSSNKLALAKEIGLRRVTSSYINRIGEQHQYYRFNQNTTF KYGGRKVTLPKGTIVNGEVVLGSTKKVLMSGWVGVSYALKKKLNLKEPTKEFGVYLSYSP KKYTLIKRPAYTLPYGNNILYSGGVSTFKDRAVKYYHDSSFPSNALRVTSDGYLEFYKYG HTPLGDGGLEWSYVQKPTSYVKINYVLNKGSKKYLYFQRKLSGVKATRLSGGRYRYRLTI NNLHTPYKYTGKSYDMVASFYTVGGVKYFEAPAQSNNYGSD >gi|238617817|gb|GG669604.1| GENE 331 335785 - 336759 917 324 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508174|ref|ZP_03938223.1| ## NR: gi|227508174|ref|ZP_03938223.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 324 1 324 324 619 100.0 1e-176 MTTATRNYHVTLPSSKVIQKFYLDFNNKVAYFLQMTARSHKDMTLTYGGFDPDESEINLS NNSTQMHLTNFGHGQTFELFTWNNQLYAWVMTYTGSNASTDGDYWATRVARLPIDGTSKT PADVNSITYLNYMGTGKDKNMTLYRADETRLAVWTQEGQTGTKKRVTAFKTDELNQIMDA QGNIKCTDDRLAKGGQAYVSSRPINSYSYPQGSWQGMELSNRTNAGYNWVYLTSGQSEDP TVIARAPWNFQSPAPQNITASINDLGGHKHETESPQLYGDYVYFGVEEKTPDSGKLNEHY IYSIPKNHSLIKLITKENTKFSAE >gi|238617817|gb|GG669604.1| GENE 332 337251 - 338582 432 443 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 7 413 4 423 458 171 29 1e-40 MANQYDYDVLYLGSGHGTFDGAIPLAHFGVKVGIIEEDMIGGTCPNYGCNAKITLDAPVA LTREVERLQGVVEGQLSINWTKSEAHKQDVIKGLPGMIGGLLKDSGIDVIHGKGTFKDYH TVLVDGQPKTAEKIVISTGLRPHRLDIPGTELAHDSRAFMSLTKLPKQIAIIGSGYISME FATIANAAGADVTVLMHGDRALRNFYHPYVAQVVKDLEKRGVKFVKNAGVSSFKKSGDQV EVHYGDDHALTVDWILDATGRMPNVEKIGLDEIGVKYNRHGIEVNDYLQTSVDNIYASGD VIDKAQPKLTPTAIFESTYLSKRFSGQSNDPINYPVIPSVVFTSPRIAKAGLSVEDGKEK GYQIETNYLPDDWYRQVDNETMGDNSLVFDKQHHLVGVTEVSEQAENVINTLLPAIEFKF GPAELGRLVYLFPSIGSSAWAQL >gi|238617817|gb|GG669604.1| GENE 333 338652 - 338921 340 89 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508176|ref|ZP_03938225.1| ## NR: gi|227508176|ref|ZP_03938225.1| hypothetical protein HMPREF0496_0339 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0339 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 89 1 89 89 147 100.0 2e-34 MALFDNRRVDGIMADRGLSDLSEETETHVEAILSELDSKKLLRDSDTANFTDRSNQEKIG FLRAIMEQNWILIAQNEKLLKVLNKGKTS >gi|238617817|gb|GG669604.1| GENE 334 339192 - 340037 646 281 aa, chain + ## HITS:1 COG:L172964 KEGG:ns NR:ns ## COG: L172964 COG1028 # Protein_GI_number: 15673511 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Lactococcus lactis # 4 281 5 281 281 267 48.0 2e-71 MAQKVWFITGTSTGFGKSLVDELIAQNELIVATARNSQKIDQWQGNPNVLIAQLDVTDQA SIQQAVNKVVSKWGHIDNLVNNAGWGYFGSVEESNEDDVRQMMETNFWGTSAVTHAVLPL MRKRHSGHIFNITSMAGITGVPGFGYYCATKHAVEGLMKALSQEVAPLGIKVTNIEPGPF RTDWAGRSHKAATRHIKDYDQTAHANDEQIEEKSGKQIGSPELLAKGIVTLSRTANPPLH FLAGEKSVTRALAEVADQQHDFETWQQLSASLDYGHEDDWK >gi|238617817|gb|GG669604.1| GENE 335 340350 - 340991 312 213 aa, chain + ## HITS:1 COG:no KEGG:LGG_02395 NR:ns ## KEGG: LGG_02395 # Name: not_defined # Def: immunity protein PlnI, membrane-bound protease CAAX family # Organism: L.rhamnosus # Pathway: not_defined # 3 170 52 217 268 76 35.0 8e-13 MPIVIIAWILNRFYIKQAVFYRPSGSLKSLTFISSPILILLLAITLSITFFYQISFKSLI ALWHILIGTTFIGISEEYLFRGLIFPQILKAIGTWTHKDLYSAIGISSLLFALIHVLNLT GQDLTATVIQMVNAFSIGCLFCAIYIRSGSLLLPIIFHSLWNFGIFGLDGAILTPRSIFW MIIFNTILLAITAYDLREQKLSQRDIWIEKLVS >gi|238617817|gb|GG669604.1| GENE 336 340988 - 341623 372 211 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1828 NR:ns ## KEGG: PEPE_1828 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 206 1 203 206 189 50.0 5e-47 MTKLTHKKFKETYFYKAELVRICRNYGLPTQGTKAELNHYIDCFLSGIPANQIKPARTYQ KAPSLKMSEISLDTPLVGSGFSFNNEARQFFATYFNVKKFSFTKEMAVIKRKAEADHNLS ITVGDLINRAKEMTDSKQTWLKDLPEEQTYQWNNFVKDFCNSSKSHEFNKKMKVAAILWH HVKHSTGSKQYHDRLLDQFSEDIKPYHIKNH >gi|238617817|gb|GG669604.1| GENE 337 341763 - 342470 604 235 aa, chain - ## HITS:1 COG:SA2189 KEGG:ns NR:ns ## COG: SA2189 COG2138 # Protein_GI_number: 15927979 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 4 225 3 234 243 69 29.0 6e-12 MTEGIIYVLHGRRGKIPKSNIDLLHTYMKRSDNPSIIGFLEGQQQTLEEGIQYLQSKTKH IIVVPVLLFSATHIRWDIPRRINDVLEAGVSFTVLKPLATTEAVFNYLNQTLKSAIQTYP NRKILIVAHGTPHFPEPYEQLTALAKRLQEVVKVPIICANHIGHHLVPDVLADESAALIV QRLFLTDGRLANRIKTNVLKAQPDSTFLPTLEDHPVITEAIEERLNETRPIINQK >gi|238617817|gb|GG669604.1| GENE 338 342483 - 342941 601 152 aa, chain - ## HITS:1 COG:BS_ykuP KEGG:ns NR:ns ## COG: BS_ykuP COG0716 # Protein_GI_number: 16078481 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Bacillus subtilis # 4 127 3 124 178 88 37.0 5e-18 MKIKIKIIYTSLTGNTQEAVDILTDSLTDLGADVEVLDSEDGIEVDNFFTDADAYVLASY SDGDNGELPDGIIDFSDDLDDYDLSGKKVVVIGTGDSSYDEFCGAVDILEKQIRDDNATL IAPSLKIENSPDDDAIADLEKLAQKLTTEVTE >gi|238617817|gb|GG669604.1| GENE 339 342938 - 344563 1356 541 aa, chain - ## HITS:1 COG:alr0607 KEGG:ns NR:ns ## COG: alr0607 COG0155 # Protein_GI_number: 17228103 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfite reductase, beta subunit (hemoprotein) # Organism: Nostoc sp. PCC 7120 # 1 502 1 517 536 305 34.0 2e-82 MSYKVTWADQRINKNEKAKLKEDGLDVFKDLPELVKHPFSEIDKSYYMYFKFAGLTVQKP QDKGYFMMRIKIPGGRINLKQADHIAWIAKTYGRGIVDLTTRQAVQYHWIPFEKLPDIFD GIASVGLTTAGAEGDITRNVVDNPLSGIDANELFDTRQTVLDVYKRFQGNRDYSNLPRKF KISINSNIYNAGNAEINDLAFTPAIKEINGQSVQGFNVKIGGGLGMLPYLGLAMNIFVTP GQVADVAEAVVALYRDNGPRRSRSKSRLKFLIQDWGVQKFENALREKVPGLQTAGNSKIV GWSNGTALGIHPQRQKGYYYIGVSIPAGRISGDDFQAFVDLAKRYGKDELRFDHGQNLII PYIAEKDLETVKSADIFNRFSTTPHQLLDFGTTCTGAEYCNLANAHTKEIFKPLLNNLDQ RFTFEKPVTITLTGCGNNCAHRSIADIGIEGVKARTQTGDHAEGYVLSVGGSLLNGGHFT EALKGKLSKDQLADALAVILKDYQDQKKLEETFYDYFSRQGRFHFQELVDQYLSQLQEAL K >gi|238617817|gb|GG669604.1| GENE 340 344579 - 346270 1453 563 aa, chain - ## HITS:1 COG:CAC0110 KEGG:ns NR:ns ## COG: CAC0110 COG2895 # Protein_GI_number: 15893406 # Func_class: P Inorganic ion transport and metabolism # Function: GTPases - Sulfate adenylate transferase subunit 1 # Organism: Clostridium acetobutylicum # 6 411 7 409 522 469 55.0 1e-132 MKEPALHIVMVGHVDHGKSTVIGRLLYDTKALPEGTFDKVKRIAKETGKPFEYAYLLDAF EEEQKQGITIDTTQLQFKTDKREYVIIDAPGHQEFLKNMISGASNAEVAFLIVDAARGVE EQTKRHAYILKLLGIKKIYILINKMDLVDYQQAKFEAVKQQVADFLNTLHVKPSGYLPIS AYYGENLLKASDKLAWFHGKSFIETLDSIEAADQPVDKPLRLPIQDVFKFDDRRIIAGRI EAGTLKIGDQITIYPSGRQTEVTAFANWVPKDAKTKAAAGQSVGVMVKDEFFNQRGEIIT KTEDQTAAPAVTNILQTNLFWMGQAPLVPGKVYKLKIATQQVNAKVLKILKVTDAGTLAA KEDASQVNLNDVAEVVFQTEQPLVYDFFDQQHVTGRFVVVDGYDVAGGGTITENYQGEVA LKGGDFTDNLNHYQINIFDSYSLTGGGRIETDEYQGKFALNEKIPLAGKGYHYPSSFNII LPRQDRVLLVQDGRFRDVVALDDDLDWQIPTINNIGAKVNINQPEDLQEFLNEQETLNDK TKAAFYQKWLDFNAYHQVLIENI >gi|238617817|gb|GG669604.1| GENE 341 346540 - 347340 547 266 aa, chain - ## HITS:1 COG:CAC0109 KEGG:ns NR:ns ## COG: CAC0109 COG0175 # Protein_GI_number: 15893405 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes # Organism: Clostridium acetobutylicum # 1 266 1 266 266 399 69.0 1e-111 MDHLDELEAESIYILREAYKNLGKLGLLWSIGKDSTVLLWLVKKAFYGQTPFPFIHVDTS FEMPEVIDYRDRIAKELGLDLIVYTNQKALDEGMNPKLGRLLCCGALKTVALNQVVHKYS FDGLIVGVRQDEEGSRSKERIFSERTKQDKWDYTNQPPELWDEFKTDFPKGNHIRVHPLL HWTELDIWEYIQRENVPIIDLYFAKNHRRYRSLGCAPCTGSVKSDAKNVAEIIEELKKTK VSERAGRAQDKEDAYAMQKLRQSGYM >gi|238617817|gb|GG669604.1| GENE 342 347357 - 347680 224 107 aa, chain - ## HITS:1 COG:CAC0105 KEGG:ns NR:ns ## COG: CAC0105 COG1146 # Protein_GI_number: 15893401 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Clostridium acetobutylicum # 1 107 1 104 104 86 45.0 1e-17 MSIKIDKEKCNGCGLCADICPGNLIKMVGKGKNRKAEMAYPDECWGCMSCVKICPKHAIE FYLGDDIGGKGTVLIAETNHKEIDWTACKEGCILEKIITSRKDANKY >gi|238617817|gb|GG669604.1| GENE 343 347670 - 349349 1580 559 aa, chain - ## HITS:1 COG:CAC0104 KEGG:ns NR:ns ## COG: CAC0104 COG1053 # Protein_GI_number: 15893400 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Clostridium acetobutylicum # 1 559 3 559 559 653 57.0 0 MEQNTVEADLLIIGGGTAGCYAAKTAAKLNPDLNIVIAEKADIRRSGCLASGVNALNAYI TKGKTPDFYVDYATNDADGIVRGDLLLTLSQRLNKVTADLEKMGLVILKDENGDYVARGN RNIKINGENIKPLLARAARRQRHVKIINHVNIVDFLVDHNRIYGAVGFSLLESAAYVFHA KTVIIATGGASGLYKPNNPGFSKHKMWYSPFNTGAGYAMGMRAGAEMTTFEMRFIALRCK DTIAPTGTIAQGVGAKQVNALGDVYETKYGLRTSERVYGTVKENQEGRGPCYLKTTGITR QQEQDLYHAYLNMAPGQTLRWLENGGPREQNVEIEGTEPYIVGGHSASGYWVNTDRETTV HHLFAAGDVAGGAPQKYVTGALAEGEIAAEAAVKQIQKHPDSIPTSVDAKAKAIVKQAEQ YLNHTDDQPSIQEIETTMQTVMDQDAGGISQYYGYTTAQLAIAETKIEELQKQIELACAH NMHELMSLYEVRERLLVCQCVIAHLGARKETRWHSFAENLDYPEPDNQHFQKYINSVYRN GQVNIIYRELVKRDEYYEH >gi|238617817|gb|GG669604.1| GENE 344 349366 - 350445 931 359 aa, chain - ## HITS:1 COG:PA0280 KEGG:ns NR:ns ## COG: PA0280 COG1118 # Protein_GI_number: 15595477 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate/molybdate transport systems, ATPase component # Organism: Pseudomonas aeruginosa # 1 321 1 314 329 264 45.0 2e-70 MYIQINHISKAFQKKGQNVLHDISFGVKKGSLTALLGPSGSGKTTLLRILAGLETATSGN ASIDGHAIESVAPQNRGIGFVFQNYALFRYLNVYQNIAFGLKTQHQPANEIKKRVTELLK LTGLTDLENRYPNQLSGGQKQRVAFARAIAPHPKVLFLDEPFAALDKQIRQELRIWLKRL IHQLGITSIFVTHDHEEAIETADEIVVMNEGYVKQIGTPNEIYNQPNCQFVAEFIGRSSV LSSPNLAGFMLPEKPFVTQIRPERVQVLKKDESTTTPGTLESATVKDVVFRGATTTVTLD LHGQSLLANRSSLKPGLVIGEHVSVLIEQLVLFKQDTSTLKKNQSPATTAAPLKSYAIN >gi|238617817|gb|GG669604.1| GENE 345 350451 - 350678 177 75 aa, chain - ## HITS:1 COG:AGc1505 KEGG:ns NR:ns ## COG: AGc1505 COG4208 # Protein_GI_number: 15888163 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 66 212 277 290 57 48.0 5e-09 MVLATARAMGEFGAVAVVSGNIPGKTLTLPLLVQSLYDQFKFPDAFAVATILLIFTFLIV FLQRLLIGPKQFQKG >gi|238617817|gb|GG669604.1| GENE 346 350688 - 351269 353 193 aa, chain - ## HITS:1 COG:RSc1346 KEGG:ns NR:ns ## COG: RSc1346 COG4208 # Protein_GI_number: 17546065 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate transport system, permease component # Organism: Ralstonia solanacearum # 9 191 27 209 326 168 48.0 7e-42 MQLFQSKKIKWPLVLIAWGFMIILLILPIALVITQAFSTGFSHYLTVLASPNTLHAINLT IAATVVSVFVNLIIGVSAAWIIAFHDFPGKRLLNTLIDLPFSVSPVIAGLIFILTFSRTG WFYPVLQSLNIQIIFAPPAIFLATIFVTFPFVARELIPVLEARGREEEQTAAFLGANLKD IFMQITFPAIKTP >gi|238617817|gb|GG669604.1| GENE 347 351276 - 352100 664 274 aa, chain - ## HITS:1 COG:BMEI1840 KEGG:ns NR:ns ## COG: BMEI1840 COG0555 # Protein_GI_number: 17988123 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type sulfate transport system, permease component # Organism: Brucella melitensis # 8 274 19 285 288 241 46.0 1e-63 MQKVSNRLVPGYRLGLSITFVGLLLIVVIPFCSLLVQGLDVGFKKFWLQATNDRVLASYA VSLKGALLAALINALLGLILAWVLTFYQFPGRQLLDYLLDLPFALPTAVAGIALAYLFSN KGWLGRLAAPMHVQISYTFSGIVIAMVFVTIPFVVREVQPVLEQLDSTYQEAALTLGARP WTVFRKIIFPEILPALISGFGLAFARSIGEYGSIIFIAGNQPFKTEITPLMIMFQLEAHS YTGATVIALVMLVFSFCFIFAIHALQRHVQRQKG >gi|238617817|gb|GG669604.1| GENE 348 352281 - 353345 1083 354 aa, chain - ## HITS:1 COG:RSc1336 KEGG:ns NR:ns ## COG: RSc1336 COG1613 # Protein_GI_number: 17546055 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate transport system, periplasmic component # Organism: Ralstonia solanacearum # 48 353 27 332 336 362 58.0 1e-100 MDTKPRHHTKLWIVLGIFLLLIIAYWLFYSHQISQSKKASGSSDHTVTLTNVSYDPTREL YAAYDKAFQTYWQKKTGKKVNIDVSNGGSGKQANSVIEGNKADVVTLAVASDITSIQKAG LINAGWQKEFSDNSAPYTSAIVFLVRKGNPKHIQDWSDLIRSGVKIITPNPKTSGGARWN YLSAWAFADKKYHHSQTADKAFLKKLYHNVTVLDSGARDATTTFVQNGQGDVLLAWENEA LLAMKEHPGKYQIVTPSISMKAEPPVAIVNKVAKQRGTTKIAKAYINYLYSKKAQEIEAQ NFYRPTNKQVAKKYKHQFPTIKRVSINDPIFGGWNKVQKKHFDNGGIFDQIYQK >gi|238617817|gb|GG669604.1| GENE 349 353841 - 354746 652 301 aa, chain - ## HITS:1 COG:SP0927 KEGG:ns NR:ns ## COG: SP0927 COG0583 # Protein_GI_number: 15900807 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 1 298 1 299 302 224 39.0 2e-58 MNIQQMRYVLAVADNGSFHEAAKKLYVSQPSLSHGIKELEHELGTQLFERTRQGNFLTNS GVAFVRQARKIIGDVENLHRYFTNEPLHTRYFSIAGQHYDFIASALCRVMQKYPDYQYLR AFESTTMKVIRDVAEFRSEIGIIFINEVNQSRLLSLFDQNNLIYEELGNFQTHIFMRTNH PLASKTVITLADLAPYPQVRFTQEATYSELAEDPLAPPSNGPVIATSDRATLSKIVNQTD AYGSGSGILEKPEQQGLIARPLKDSPKNSMILLKRTNHSLSEIAQYFIKEVKSHLHQQVT F >gi|238617817|gb|GG669604.1| GENE 350 355344 - 356339 753 331 aa, chain + ## HITS:1 COG:BH3408 KEGG:ns NR:ns ## COG: BH3408 COG0492 # Protein_GI_number: 15615970 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Bacillus halodurans # 1 330 1 329 330 307 46.0 2e-83 MEFDEHLYDLTVIGGGPVGMFATFYASMRNLDTQLIESLPELGGQVAALYPEKVIHDVAG FVPAKGAELISNLKQQLFEFKDKLVIRCDEEVLELEKQLDETFVLKTSKRMTHTRSVLVA IGSGAFAPRPLAVGYDHGLDNQKVFYFVKQVADFANKEIAIAGGGDAAIDWALTLEPVAK RVHLIHRRNKFRGLEASVDRLKASSVDLVTPYNIKQVIDGPDTGLNLNLQLAKSEEVRTL TVDSLLVNYGFTSDNHILKEWGLPLERRSLVVDENMETAISGIYGIGDAVTYPGKVKLIS AGFGEAPTAINHLAEALYPERKQPLHSTSIA >gi|238617817|gb|GG669604.1| GENE 351 356705 - 358114 1118 469 aa, chain + ## HITS:1 COG:lin1164_1 KEGG:ns NR:ns ## COG: lin1164_1 COG0007 # Protein_GI_number: 16800233 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III methylase # Organism: Listeria innocua # 3 245 2 248 252 256 55.0 7e-68 MGGFVSLVGAGPGNPELLTILAKRRLSEADVVVYDRLVNPALMAPLAAEKIDVGKLPQHH KVSQYQINDLLVEQARKGKRVVRLKSGDPYVFGRGGEEGQYLQQQRVAFEVVPGITSAIA GLGAAGIPITHRDFASSFHVITGHHKADGTQLDWENIAHQEGTLVFLMGMGELGHIAEQL IKNGRASSTPVAVIQWATHWNQRSVKADLGTIETVVETHHIGSPALIVVGNVVSLMDELN PELPLQGLHLLIPFKDPSKLFSKLQDQGAAVNFFKRRTQVPLTFDLPDMLKGGTLVISDQ TAFDFFEHRLLDTGYDQRVLSKWRVLALNQAIAGHLKRHGLLVDGYFESDNSLFSEPEIV IGEETALGRFKEVKSQKIATYRAIPVNQTIEVGCFHGIIFPSSASVDDLVSGCRDSQKRQ LASMPCFAMGKQVVARCQASGIRNVISVNPSIDAVMPAIQSYFKCRSVI >gi|238617817|gb|GG669604.1| GENE 352 358144 - 358602 232 152 aa, chain + ## HITS:1 COG:lin1105 KEGG:ns NR:ns ## COG: lin1105 COG1648 # Protein_GI_number: 16800174 # Func_class: H Coenzyme transport and metabolism # Function: Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) # Organism: Listeria innocua # 5 147 3 145 159 105 37.0 2e-23 MDNPYPVILNLATKSVAVIGGGHVAARKIKSLLSAGASVTVISPDLSSQIDKKAVCWVKR AYLYGDITDMDIVIACTDDPVVNQQVTADATHFQLVNNASNKGQSDFFNVAEVENNHFLF TVSTKGQSPAMAKTIKKKLAAWLESQEWFRKE >gi|238617817|gb|GG669604.1| GENE 353 358608 - 359948 1098 446 aa, chain + ## HITS:1 COG:lin1592 KEGG:ns NR:ns ## COG: lin1592 COG0373 # Protein_GI_number: 16800660 # Func_class: H Coenzyme transport and metabolism # Function: Glutamyl-tRNA reductase # Organism: Listeria innocua # 1 424 1 427 435 308 41.0 1e-83 MFVIYVSLNYQKLPIEIRERFVLSKQELIRANRLLNNEKSILENVILSTCNRTDVYAVVD QLHTGRYYIKRFLANWFHMDLEQINQWVQIGVKADAVSHLFRVATGLESLMVGEPQILGQ VKEAFSLAYEKQTTGVILDHLFKQAITFSKRMHTDYRVSELAQTSGQAGLHQIKATLKTL DDKKLVIVGLGQEGAHVLKNASTMGFNRILISNRTDMKAEKAASQYGSVVQMIPWQFVTS AVKNADAVILATSVERALFKGNIFKTQDDKPKILIDLGVPRNVSKIGLPSTIIYLDIDHI TQIIEQNQLYKQRMLDQIAKKVPKVVEQFYIWQKQLHVAPVIRELRESSLNIEKEVYDSL LRKLPELDAHERKVISKHMKSIINQMIKGPIKTIKELSVQADADSDLVFFCKLFGLSIDE TILESLLLREADHSQTTTEQEKIYET >gi|238617817|gb|GG669604.1| GENE 354 359938 - 360849 657 303 aa, chain + ## HITS:1 COG:lin1591 KEGG:ns NR:ns ## COG: lin1591 COG0181 # Protein_GI_number: 16800659 # Func_class: H Coenzyme transport and metabolism # Function: Porphobilinogen deaminase # Organism: Listeria innocua # 1 303 1 304 309 271 47.0 1e-72 MKPEFVVGTRQSKLAMRQTNLVVDALKERFPKIIFKVEKITTQGDRNRKDSLRKIGGKGI FVKEIEQRLTDKRIDFAVHSLKDVMPSLPKNLIIGGVPKRDSPFDCLISTKPFSDIDQLP KGARIGTSSSRRQGQFSHLRPDVEIVSIRGNVDSRIQKLQRDHLDGIILAEAGLNRLGVD LTGLYRLSLKNDLLPAAGQGAIGIECRADDHDTLALLKQIEDADTRQSVTIERDFLRRLG GSCNFPIGAFASQTSMGVRFDGLVASIDGKIFFSKSKTEQTGGNLGEEVADELISEGALT LIQ >gi|238617817|gb|GG669604.1| GENE 355 360875 - 361855 867 326 aa, chain + ## HITS:1 COG:lin1589 KEGG:ns NR:ns ## COG: lin1589 COG0113 # Protein_GI_number: 16800657 # Func_class: H Coenzyme transport and metabolism # Function: Delta-aminolevulinic acid dehydratase # Organism: Listeria innocua # 4 323 5 324 324 438 64.0 1e-123 MVIFDRHRRLRSTASIRDLVRENHLIKDDLIMPVFVDATIKDKEEIASMPGIYRFSLAAV LDEIKEIVDLGIQSVIIFGIPDHKDDVGSGAWEENGVVQQAIRKIKAAYPDLIVIADTCL CEYTSTGHCGIVKDHRVLNDESLVYNTKTAVSQVKAGADMVAPSNAMDGFVAAIREGLDK AGFQNTPIMSYSVKYASSFYGPFRDAADGAPQFGDRKGYQMDPANRLEALREVASDEKEG ADFVMVKPAMAFLDIMRDVRNHTNLPLVAYNVSGEYATIKAASQNGWIDEDQIVKETLVG MKRAGADLIITYFAKDAAQRINKQRW >gi|238617817|gb|GG669604.1| GENE 356 361913 - 363157 1106 414 aa, chain + ## HITS:1 COG:BS_hemL KEGG:ns NR:ns ## COG: BS_hemL COG0001 # Protein_GI_number: 16079864 # Func_class: H Coenzyme transport and metabolism # Function: Glutamate-1-semialdehyde aminotransferase # Organism: Bacillus subtilis # 1 411 18 427 430 484 58.0 1e-136 MPGGVNSPVRAFKNVGGNPLFISKGAGSHIFDIDGNEFIDYVLSWGPLILGHADSKVVTD LQAAVARGTSYGAPTVLETELAKKIQAIVPSLEMMRMVSSGTEATMSAIRLARGYTHRDK IVKFVGNYHGHSDSLLVDAGSGVATFNDIHEAPGVPEDLAYDTLTVPYNDIEGIKDLFAA HGDEIACVIVEPIAGNMGVIPGTADFLKTLRNLTTQAGSLLIFDEVMSGFRAAFHGAQSI YEITPDLTTLGKVVGGGLPVGVFGGRKEIMKFITPDGPVYHAGTLSGNPLAMTGGISTLD QLDDALYTQMVTRTDQLTTGIKDAAAAHNVPITVHHVGTMWSYFFNPGPVNNFEDVQKSD VDYFAKFFKGLLQEGIYTAPSQFETNFMSSKHTEEDIDQTIAAFNAVFDKIEVG >gi|238617817|gb|GG669604.1| GENE 357 363274 - 363951 200 225 aa, chain + ## HITS:1 COG:no KEGG:LAR_1584 NR:ns ## KEGG: LAR_1584 # Name: not_defined # Def: putative type I site-specific deoxyribonuclease # Organism: L.reuteri_K # Pathway: not_defined # 8 224 19 236 236 92 30.0 1e-17 MSESLKEKLADVSDPLYCPLRLLQPVTLTVTEIHTIQEADYFVITSQFALSIYLKKLITF NRSAGLIVLSKKMAQRVRAIGKQAVIVAPEENQRSLVPILKSLTGYIIVLSGNLTLSGNS LPKTVETVRIYENKWDFAMQETVAKKLANKRINRVLVTSPSGYQRLKEVEKLQPTSFIQP TYYVLGEQTAGIIYKDHKRVVKPDRHIDVLKQMIDKMCQDERKNN >gi|238617817|gb|GG669604.1| GENE 358 364003 - 364401 450 132 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2088 NR:ns ## KEGG: Lbuc_2088 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 132 1 132 132 197 76.0 1e-49 MAQELGTTDLGTYEYVSRVYNENMRLENYKLPTTSGDGEIIFFDTDEINLTMEIKEQRVE KITIITPAPQSSTYMQVFEGFEFGLDALGTWINTYHRSTSTHGPASDVVNGILASYNTTK NNVLTVSLTRAK >gi|238617817|gb|GG669604.1| GENE 359 364467 - 365309 958 280 aa, chain - ## HITS:1 COG:L67726 KEGG:ns NR:ns ## COG: L67726 COG0656 # Protein_GI_number: 15673225 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 8 279 8 279 280 388 67.0 1e-108 MAKIPDITLNDGYKLPALGLGTYQIRGGEGVQQILTAIKDGYRALDTATNYDNEGVVGEA IRESGIPRSQFIVTSKLPGKYHEYDEATKAIQESIYRLGVGYLDLYVIHWPLPKRDHYVE AFQAMIDAKKRGLIRSIGVSNFEPEHLDRVIKETGVTPAVNQIEIHPYWVQERMLAEDKK RGILTEAWSPLGRGSAALKEPIIQKLAQKYNKNVGQIILRWHVQRGIVPIPKSTNLNHQR ANLAIFDFELTPAEVKEINGLNKQDGRVDGQDPNVYEEFE >gi|238617817|gb|GG669604.1| GENE 360 365332 - 365649 182 105 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0133 NR:ns ## KEGG: Lbuc_0133 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 104 1 99 101 90 52.0 3e-17 MNKSEQFLDFFNKAYNEPDKHSNYSTNSELRFDSRSDALTVKRLLEDQSPYAKYYHLSAE YINPNQSMQVGWYLTVRKIADPSKDDQSSEDHNDPNSNNHPKNTH >gi|238617817|gb|GG669604.1| GENE 361 365873 - 366856 764 327 aa, chain + ## HITS:1 COG:L0194 KEGG:ns NR:ns ## COG: L0194 COG0276 # Protein_GI_number: 15673549 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Lactococcus lactis # 3 306 4 308 314 261 43.0 2e-69 MVKKGLLLVNLGSPVSPLNKDVKAYLQEFLSDQHVVELPKWFWQPLLRGIILPTRTWRSA TFYQHMWRKGGSPLVIYTKIMCEKIQKELTDWDVQYAMTYGKPDIGQQLHKMKEAGDDQI VVLPLFPQYTKSTHGGIIQQVADSGIKATIIKSFYQYPQYQKLLAHQIDQSYQQKNYDAV IFSYHGIPTAMVKHGDPYLKECRETTAAVTKFLQLPHEKIRMTFQSKFGPMPWLKPYLKN TLMQLAAMGKRNVLIVTPSFVEDCLETIEENNVQNYQTFRASGGRVFDAVPPMNASDAFC SFLAEISKNQLVQDGGGYDERAKEKES >gi|238617817|gb|GG669604.1| GENE 362 366828 - 368150 1119 440 aa, chain + ## HITS:1 COG:SA0956 KEGG:ns NR:ns ## COG: SA0956 COG1914 # Protein_GI_number: 15926690 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Staphylococcus aureus N315 # 8 434 13 438 450 365 47.0 1e-101 MNEQKKKSLDEINESVDVPSVYETSFVQKFLAYSGPGALVAVGYMDPGNWLTSLSGGSQY RYKLLSVLLLSILVAMFMQTLAIKLGVVARQDLAQAIAVKVPKLVRYVLWIINEIAMMAT DMTGVVGTSIALRLLFGLPLVYGILLTILDVLMVLLFLRFGIRRIEFIVLTAIMIVGVIF GIDVFRAHPAFAGILNGLIPSPQILTTHRELILSLGIIGATIMPHNVYLHSSLAQSRRYD HNNPKQVNEALRFAKWDSNVHLVAAFLINALLLILGGTLFFNKGNQLTAFRDVYEGLKNS AIVGSLASPLMSTLFAFALLITGMISSITSTLSGQIVMEGYLNIRLPLWERRLITRFVTL IPILVIGFIVGFSEQTFEAMIVFAQIALSIALPFTLYPMVALTSNRNLMGSHRNPAWITI SGYVLTTIITVLNVEFMFSI >gi|238617817|gb|GG669604.1| GENE 363 368212 - 368973 484 253 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0136 NR:ns ## KEGG: Lbuc_0136 # Name: not_defined # Def: NADPH-dependent FMN reductase # Organism: L.buchneri # Pathway: not_defined # 1 253 1 253 253 428 78.0 1e-119 MKVLGILGAHRKDGMTEKMLATVLAGVEAPNQTDIIYLEDYPFKPDRKDQQDPVLNELEQ KMLNSDVWVLAAPTYWGGLAGKMKDFFDCMRERLVRIDHLGGTHPDRFKDKHYLSITDCY TGAFENWVTGVTDQSFRTIDKVMSAAGVIKLHELVLTNTYGMSELPESKKQTCLEWGKRL NSVRKRDDSTVKRYIELFFMIAFMAFVTMGIQFGFHLVPRHGFWISYLSFVLIFYVLLGS ILHFFTVVKHRRR >gi|238617817|gb|GG669604.1| GENE 364 369220 - 370080 627 286 aa, chain + ## HITS:1 COG:SA2078 KEGG:ns NR:ns ## COG: SA2078 COG1957 # Protein_GI_number: 15927863 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Staphylococcus aureus N315 # 1 281 25 308 313 285 52.0 7e-77 MPDVHLTGVGVIDADGYIEPAVDASRKIISKFGRHSNVRVAASNSRAVHQFPKEWRLSSF SFDAFPILNEHGSDKAPIADKPAHLDMIDKIQREDEKTTLVMTGPLTDLARALEVDPTIV DKIERLYWMGGTMRTQGNVLEPKHDGSAEWNAYWDPYAVKTVWDSRIKMQMVGLESTNQV PLNADVQQHWANLRRYPMMDLIGQGYALVSSYEANSTYYLWDVLTAVASQYPEIVQTKDV KGDVIVNGPSAGKTYESQNGRPINLVTEVKAKKFFDKIDALLTREA >gi|238617817|gb|GG669604.1| GENE 365 370086 - 371279 677 397 aa, chain + ## HITS:1 COG:DR2333 KEGG:ns NR:ns ## COG: DR2333 COG1902 # Protein_GI_number: 15807324 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Deinococcus radiodurans # 4 396 1 403 403 305 40.0 1e-82 MNYLQVSKVITLPCGVTIKNRFVKTALSETMATDDHQPNHLFNRLYRQWAIGGAGIVITG NVMVDRHALAEPGNIVVDSDRVLPKLRQWAADGTINDTQLWMQLNHPGRQSPKMFSSRPV APSAIPITGKNRRAFESPRALTANEIKELVQKFVKSAVIAQKAGFTGVQLHGAFGYLINQ FLSSKMNHRTDDYGGSIENRMRFLTDIYQGIRKACGPKFPISLKLSLTDIDVTGFTQRQF EMVIKKMAALGIDMIEIAGDDYENSQIGFSGQAHFINQLVNVPIALSGGFRHISAMEEAL GRQDASLIGVCTPMAFMTDMPNQILRSRYQPFVLPLSTGSNRLDDKLKSIIVTSYCEEQI RRIAEGKQPKLYRNAWLSMLAGIQLHGIKGLKPRRAQ >gi|238617817|gb|GG669604.1| GENE 366 371287 - 371976 723 229 aa, chain - ## HITS:1 COG:SA2297 KEGG:ns NR:ns ## COG: SA2297 COG2357 # Protein_GI_number: 15928088 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 226 1 228 230 192 48.0 6e-49 MILERRNFMDVKQIEAQLKQTKFEDQIPDLKKLVNIYQLCHSGANEIGTKLENLDDEYSM NYDHNPIHHMEERMKSTGSLFEKLKRKGYTLTIENVRDHIRDIAGIRVVTNYIDDIYTVE EALSEQSDVTVLKRKDYIENPKESGYRSLHLVVSVPVFQSKGVFDVPVEIQFRTIGMDMW ASLEHQLSYKTDADPKKVKEHANNLKDYAKELNDIEIRMQSIFRDLQSH >gi|238617817|gb|GG669604.1| GENE 367 372106 - 373023 896 305 aa, chain - ## HITS:1 COG:BS_iolS KEGG:ns NR:ns ## COG: BS_iolS COG0667 # Protein_GI_number: 16081029 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Bacillus subtilis # 3 302 2 309 310 307 50.0 2e-83 MAQRIKIGKSTVTTTPLGLGTNKVGGHNLFDGLKDEDGVEVVKAALEDGISLLDTAYMYG LGKSEEIIGNVTQDYDRSKFVIATKAAQDPNNDLKPNNDPKFLKKSVDDALQRLQTDYID IFYIHFPDDKTPKAEAVQALVEEKKAGKIKAIGVSNFSLDQIKEANADNQVDIVEDNYSL VHREAEREEFPYLKEHQISFVPYFPLSSGLLTGKYTPADNSKFSRFSSRQYTAIMAALEK VKAIAVAHQATVAQTILAWYIKNQNISVVIPGARVADQVHSNAQAMDITISDDEFKQIDQ LFKQF >gi|238617817|gb|GG669604.1| GENE 368 373169 - 373648 518 159 aa, chain - ## HITS:1 COG:lin0942 KEGG:ns NR:ns ## COG: lin0942 COG0783 # Protein_GI_number: 16800011 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Listeria innocua # 10 158 9 156 156 137 48.0 6e-33 MASNYDFPKTREQLNQLVADLSQLQTNIQQTHWYMRGENFFRLHPLMDDYNDQLADQLDN IAERLIAINGSPYSTTHEFIEHTGLPDEKVTWDQLTMRDFMQRLSDQFKYLRDQYQKGIE ITDIEKDFPTQDMLNGFKEAIDKNIWMINAYLGKGPYDE >gi|238617817|gb|GG669604.1| GENE 369 373798 - 375126 1293 442 aa, chain - ## HITS:1 COG:PA5530 KEGG:ns NR:ns ## COG: PA5530 COG0477 # Protein_GI_number: 15600723 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pseudomonas aeruginosa # 5 423 11 432 435 473 59.0 1e-133 MQELSQRRITSNIIKGSLGNMVEWFDWYIYASFAIYFAGSFFPDGNQTVELLSTAAVFAV GFLMRPFGSFIMGKYADQRGRRAALTLSVSIMAGGSLLIALIPTYATIGIFSPLLLIVIR MVQGLSLGGEYGISATYLSEMATSNQRGYYASFQYVTLISGQLLALIIQIGLQAILTDSQ LRSFGWRIPFGLGAVGALIVLYLRLSMDETNQFKRAEKTNTTRGTLRKLAKYPGQVLTVM GLTFGGTIAFYTYTTYMQKYMINTLGLPTKSVTLINFLALLIFMGLQPLFGHISDKIGRK PLLYWFGIGGTLLTVPIFLGLQYFDNEFSAFLLMMAGLLIVSGYTSINAVVKAELFPTEI RALGVGFPYGLTVAIFGGTVEYVALWLKNIGHENWFFYYVSAAAFVSLLVYVRMLETSKH STLNEPTKQPAETSNDSEHITD >gi|238617817|gb|GG669604.1| GENE 370 375396 - 375992 347 198 aa, chain - ## HITS:1 COG:BS_yfnB KEGG:ns NR:ns ## COG: BS_yfnB COG1011 # Protein_GI_number: 16077800 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Bacillus subtilis # 4 198 34 228 235 185 44.0 4e-47 MHLNRPLTSEIADYYRQLNATLWQRYEKGNVTRNQLLNSRFTLLFRHFGEDIDGASIEKQ YRSFLAEGHDQIPGATQLLTDLSQHHDLYIVTNGIAKTQERRVQEAGIAKYFRQMFISER IGFQKPKQAFFDFVSQKIDHFSKQNTLVIGDSLTSDILGANTYGLDSVWFNPAHLHNSTP AEPTFEIDSLTTLKTIVN >gi|238617817|gb|GG669604.1| GENE 371 376085 - 376513 249 142 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0073 NR:ns ## KEGG: Lbuc_0073 # Name: not_defined # Def: regulatory protein MarR # Organism: L.buchneri # Pathway: not_defined # 1 142 7 148 148 225 81.0 5e-58 MKDIGYLAQDISILHRQYYKDTGELFKKHQLNPTAACILLTIKDNQYINQNQVAKSLVID KGLAAREIKKMQNLGYLTKTAGVGKSIILNLTDTGQKIVPVIQNIRKQWWETRFSETGIK PDSPLISAIEKVVDSIVSESLE >gi|238617817|gb|GG669604.1| GENE 372 376651 - 378327 1488 558 aa, chain + ## HITS:1 COG:SA2008 KEGG:ns NR:ns ## COG: SA2008 COG0028 # Protein_GI_number: 15927787 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Staphylococcus aureus N315 # 4 558 5 554 554 617 57.0 1e-176 MATKKRGSQALIQSMINQGIKYVFGIPGAKVDQLFEDLQYSDDPNAPKLVVARHEQNAAF IAAGIGRLTGKPGVVATTSGPGVSNLTTALMTATAEGDPVIGLGGQVPRDDLSRLTHQSI PSKELMSFAAKSSVEVQDANNLSEAFMNAYTAAVSPKAGAAFISLPADVLSDDVDRPVIK TLTTPQASQASEKTLDKIVTLLKAAKLPVILAGMRASSEEVTTALHQLLAKVSLPVVETY QGAGIISHEFEKDFFGRVGLFRNQIGDTLLKQSDLVLAIGYDPVEYEARNWNIEHNDAVI NLDSVAPELSNDYQPDMVIEADIAETIMALTNKIPDDYRLSDQSIAHLNTLKEEFEDEKL VETEAKPGTVHPLSIINELQQRVDDATTVTVDVGSHYIWMARHFRSYRPRHLLFSNGMQT LGVSLPWAIAAKLVRPNEKVVSVSGDGGFLFSGQELETAVRLNLNIVQLIWNDGYYDMVK FQEEAKYGRYAGVEFGPVDYVKYAESFGATGLRVSDPTELGKTLDQAFSTEGPVIVDIPV DYSDNIKLKSALLKDSLN >gi|238617817|gb|GG669604.1| GENE 373 378346 - 379056 689 236 aa, chain + ## HITS:1 COG:SA2394 KEGG:ns NR:ns ## COG: SA2394 COG3527 # Protein_GI_number: 15928187 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Alpha-acetolactate decarboxylase # Organism: Staphylococcus aureus N315 # 7 236 5 234 234 176 40.0 2e-44 MAKHTTLYQHGTLALLVPGLLKGTMTMGELLKHGDTGIGTGEGLDGELIILDGKPYQIDA SGKVNVVSNSFTMPFANIHYARYSPLAELENVSQDDLNEQIVSLSKAENTFFSVKITGTF SNIKTRAVRKSEPPFHTLAQTASHQSIFTRDQVDGTLISYYSPELFDGAAVAGFHHHFLS DDHQFGGHVLDFQLDKGDVSYQLFDTFEQHLPVNDKEYMQHDFSSDDIVGSIHTAE >gi|238617817|gb|GG669604.1| GENE 374 379474 - 380862 1393 462 aa, chain + ## HITS:1 COG:L140856 KEGG:ns NR:ns ## COG: L140856 COG0477 # Protein_GI_number: 15673485 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 9 439 2 427 433 304 41.0 2e-82 MENAAATEKKISSKFIYFFGSFGGILFGYDIGVMTGALPFLQIDWGLQNEAGIVGWITSS VMLGAIFGGAIAGQLSDKLGRRKMILLSAIVFTIGSLLSGISPNHQGEYYLIAVRVFLGL AVGAASALVPAYMSEMAPAKARGSLSGLNQTMIVSGMLLSYVIDFLLKDLPENWAWRLML GLAAVPAIILFFGVYKLPESPRFLVKSGREADARRVLSYIRTNNDEIDDELNQIKQTANE EKTAAKSTSWATVFSGKYRYLAIAGIGVAAFQQFQGANAIFYYIPLIVEKATGKAASSAL MWPIIQGAILVIGSLVYIAIAEKFNRRTLLVLGGSVMGLSFLLPTIINLLMPNASPMMIV VFLSIYVAAYSFTWAPLTWVLVGEVFPLAIRGRASGAASSANWIGSFAVGLLFPIMTAHM PQDAVFAIFGVICLLGVWFILRAVPETKGRTLEEIEEQGTRK >gi|238617817|gb|GG669604.1| GENE 375 381002 - 381292 89 96 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508218|ref|ZP_03938267.1| ## NR: gi|227508218|ref|ZP_03938267.1| hypothetical protein HMPREF0496_0381 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0381 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 96 1 96 96 112 100.0 1e-23 MTIWNDHRSFLLIGITVVGFILWGLLKRVSYFSHQILYYFLIIVLALIGLLSNGLGVYFL IQPFYDLVISIIISTLAIIIGIFYLFSVFMFSQRKK >gi|238617817|gb|GG669604.1| GENE 376 381314 - 382000 704 228 aa, chain - ## HITS:1 COG:BMEII1016 KEGG:ns NR:ns ## COG: BMEII1016 COG0693 # Protein_GI_number: 17989361 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Brucella melitensis # 3 223 4 224 235 166 41.0 4e-41 MTKALIVATNVPKFNNVNRATGLWLREATHFHKVMQDNEIDIDYASPTGGYIPLDPLCLS GDSMDNIDWDFYLDNHFRNHYLATSLSPKEVTAEDYQVIYFAGGHGAMWDFPENKNLAKI AQQIIANNGIVSANCVGTTALLAMRTKDGKRFTAGKKLTSFSNDEEALNGLTSEVKFLPE DELKKAGANFIKGDPFKSNVVIDGNLITGQNPNSATAVGEAVIKDLLK >gi|238617817|gb|GG669604.1| GENE 377 382264 - 383175 284 303 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 6 296 9 306 309 114 27 2e-23 MADTILDVEGLTKNFGSKKVLKNVSFSVEKGHIVGLVGPNGAGKSTIMKAILGLFNYPSG KITLDGQPVSQTSHQALEKVGALIEYPGIYPFLSGLQHLELFSNDGVSKQQIMDVVDKMK MGSYIKRKAKTYSLGMKQKLGIALALVNHPALIILDEPMNGLDPQANKDLRTIILDLAKQ GTTFLISSHILSELEKLIDDLIVIDKGQIVYRGDMATLESGSTRSMVLQTSDDAKAKDIL SQNGYKLIDSDHVSVVEDETTKMADIIKLLSTNNIEIEDVKHVHSDLETSLLDLLKNDKV KEG >gi|238617817|gb|GG669604.1| GENE 378 383182 - 383955 591 257 aa, chain + ## HITS:1 COG:SA2303 KEGG:ns NR:ns ## COG: SA2303 COG1277 # Protein_GI_number: 15928094 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Staphylococcus aureus N315 # 1 257 1 256 256 137 39.0 1e-32 MVTLVRQEIFKLVHKKSTWATSIILLVIMTIFAVISRNHPNTIDPKTIFVSLFTGFDWIV LFMIAAASSIISMEFQYGTIKELLYRKYYRGEILVSKWLAMVLYSIYFIALAFVYSLILK LILFNGTFQLSETYGNKHSILVTALYTSLSGFVALWLVLSLVLLLANLFKSSAAAISVGI IGYFAINVVSSMLIIAIKKWTWLKWNPLNMMNYPNQVISPSLKHMTLLSTNELLIGSLVY MVIFLGISYSVFKRRNV >gi|238617817|gb|GG669604.1| GENE 379 384197 - 386386 1550 729 aa, chain + ## HITS:1 COG:SP0202 KEGG:ns NR:ns ## COG: SP0202 COG1328 # Protein_GI_number: 15900138 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Streptococcus pneumoniae TIGR4 # 8 716 3 721 735 971 65.0 0 MDYIKTEATNQNDTKLRSLTVIKADGEKCSFYPYKINLVIEALTDETDVQEKLKQQIFER LSSFEEELTSKDIRDSFKAVLSEMDRGDLVASYDQYRLKDEAKWQAAINPSTKLNQLFDK SDTVVHENANKDSNVFSTRRDLTAGMVGKSLGLTLMPETVGKAHLRGDIHYHDLDYSPMT EMTNCCLIDFKGMLNNGFKIGNADVEPPKSIQTATAQMSQIIANVASSQYGGCSADRTDE LLAPFARLNFEKHLADAKHWIAPDKQEAFAKEKTKKDIYDAMQALEYEINTLFSSNGQTP FTTVGFGLGRSWIEREIQSAILRVRIKGLGKQHRTAIFPKLIYTLKRGLNLKPDDPNYDI KQLAIECATKRMYPDILMYDKIIELTGSFKAPMGCRSFLQGWHDENGKEVNSGRMNLGVV TINLPRIAIESHGDKAVFWEILQDRLEIAKKALLNKVDRCKQAKPKNAPILYQYGAFGKR LKDTDSVDELFTHRRATVSLGYIGLYEVGTEFYGPDWEHNQTAHKFTVSIVKCLHDYCAK WEDQYDYHFSVYSTPAESLTDTFCELDTKKFGKINDITSKEYYTNSFHYDVRKNPTPFEK LAFEEAYPKYAAGGFIHYCEYPNLKQNPAALEAVWDWAYDHVGYLGTNTSIDHCYKCGFD GDFKPTAKGFECPECGNRDPKTCDVVKRTCGYLGNPQIRPMVHGRHEEIASRVKNMRLGD MNDGGNSKN >gi|238617817|gb|GG669604.1| GENE 380 386364 - 386951 374 195 aa, chain + ## HITS:1 COG:lin0306 KEGG:ns NR:ns ## COG: lin0306 COG0602 # Protein_GI_number: 16799383 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Listeria innocua # 11 191 2 182 183 262 67.0 4e-70 MAETRKIRLPNDPKPKQWLAKDRSQQYIASYKPFNMVDGEGVRCSLYVSGCLFNCPGCYN KVAQNFHYGHPYTKELENQIIKDMSESYVQGLTLLGGEPFLNTQVCIKLAKRIRAEFGHT KDIWSWTGYKWDELMKESDDKLELLSYLDILVDGRFLLAKKDLTLQFRGSSNQRIIDVPK SLAEKKVVIWEKLVK >gi|238617817|gb|GG669604.1| GENE 381 387041 - 388744 1327 567 aa, chain - ## HITS:1 COG:CAC0020_1 KEGG:ns NR:ns ## COG: CAC0020_1 COG0477 # Protein_GI_number: 15893318 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 1 419 1 420 458 221 34.0 4e-57 MRIKQKLIIFSMMIGIFLCMLDTTVMNIALPAIQSGLNVNLGTLSWALNIYTITFAVFTI PFGRIADIIGRNKTYLVGLVLFALGSLLSGSANSAEFLIIGRGIQSLGAAIIFPASMTIG ISTTDVKHRTGVLAALGVTQGFASAFGPTIGGIVTQYLGWRYVFLINLPLILIVLILCCG LLPLKNEHRFKARIDLWGMLFSMSTLLALTLALVKGNDWGWSSRLIIGLFTTVIVSLACF IVAEHVTKDPMVPLGLFKSRQFTGASLVTILTEIFLVAVLVIMPSFFTNILNKSELTAAF MITPTSFMIFIFSPIGGILNDKIGPRLLVSVGFLQIIAGYMILSIVNPAHYGQTIISLLL IGGGFGIIAGPLVVLGASNFTGKLLSASQSVLDVFRQIGTLLAVAIFVSALTANLATARH QSIIQANTRIETTQLSAKAKTDVAINVRKAISDNGKTTDSTSKQGITPAKTNQLIQANYQ KTIAKMPNTKLMLQKQKALIHAKISKLVKREVAEQNTQIKAVAKVIRSDTKQHMTDAFTK GYKMALPFTMIAALSVFLFERKRDYLK >gi|238617817|gb|GG669604.1| GENE 382 388927 - 389451 452 174 aa, chain + ## HITS:1 COG:no KEGG:lp_1688 NR:ns ## KEGG: lp_1688 # Name: not_defined # Def: transcription regulator (putative) # Organism: L.plantarum # Pathway: not_defined # 1 172 1 174 183 124 39.0 2e-27 MSPKELKDQKLTDIFKALMGLLKGQSFEEISITELAKRAGVSRAYYYKNFVTLEDIVSQY EMLRIISYLRQLPDGSRLTLQTLMTHYFQLVLDDQRDQLILISAGKEQVLIKTFHTVLVY LLKNKLIPLTDRTTDSYWGDYFSGAVINLSISWLKQGAVEPPEYMGKKVETFAN >gi|238617817|gb|GG669604.1| GENE 383 389485 - 389937 308 150 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0163 NR:ns ## KEGG: Lbuc_0163 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 147 1 147 150 168 58.0 5e-41 MIFYTYDYLHTSQNTWQYARIVITCVLVLAFLLFLIQYWRHRFDIKYKDLSIIFGTLLLL ILGMQYNDFSNIQNSIKQSGQMTTVVKAVARQLKVSKQDISVNSTTPNDNVLVKTPKGFF RVDYNTDGSQFVLEQVILHDSDAVKVEGEK >gi|238617817|gb|GG669604.1| GENE 384 389937 - 390581 481 214 aa, chain + ## HITS:1 COG:L163025 KEGG:ns NR:ns ## COG: L163025 COG2323 # Protein_GI_number: 15674091 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 211 1 211 211 218 45.0 6e-57 MFTYSDVMLKLIVGFVFITLLINLTGKGNLAPTSAMDQLQNYVLGGIVGGVIYNPAITMA QFIVILLLWSLLIMVTRYLKTHIHWFGKFVEGDPITIVRNGKLLVENCLRANLSAKDVDF KLRTAGVYDIAEVKRAIVEQNGSVTVLRFGAGSIRYPVIIDGQVDPDVLDMMDKDQSWLD TELKQHGIDNIKDVYMATFRNSKLEIVKYDQKDE >gi|238617817|gb|GG669604.1| GENE 385 390878 - 391612 314 244 aa, chain + ## HITS:1 COG:SPy1834 KEGG:ns NR:ns ## COG: SPy1834 COG1396 # Protein_GI_number: 15675661 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 107 1 112 195 74 38.0 2e-13 MDFGEQLQIRRKQLNLTQAQLAQKLHVTRQTVSRWENNATYPNLDILVEMSDFLDLSLDK LLKGSDSKMVETISKDVRLKQRYRKWLISIGILFLLLLVFLGVLSWGRHSQNEMIDRFNP FLKTTYGYALLPEKTPPKREKSIITGSDGKRHQKWMNVPQPVNARVVTNPFGDGEWLKFQ VGAIPEKGMNYAVVLHKGSYVKRARLVTRSDIPSLIRSIMGQNDQYMPYTYKLFGPKGSW NPFH >gi|238617817|gb|GG669604.1| GENE 386 391618 - 392142 143 174 aa, chain - ## HITS:1 COG:SA2495 KEGG:ns NR:ns ## COG: SA2495 COG1396 # Protein_GI_number: 15928290 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 7 80 3 76 189 66 45.0 3e-11 MTFLDQLPSQLKKARIRKGYSQQQVADKLRVTRQSISSWENGHSRPDLYNLTLLSKVYDE PLDNFVKDNHSFDLQIESDREEFLHFFNLLQQKELEKIKRIDLYLSIIIMILGLIPILGI IPSFFVVWQQSHRTFKSPLWWSSLISLAISIILSMLLIYLTVSHHWFNLIPSIS >gi|238617817|gb|GG669604.1| GENE 387 392430 - 393839 1167 469 aa, chain - ## HITS:1 COG:SPy1654 KEGG:ns NR:ns ## COG: SPy1654 COG1113 # Protein_GI_number: 15675525 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Streptococcus pyogenes M1 GAS # 1 451 3 455 459 478 55.0 1e-134 MKEKSKIRMNADGTKRELSNRHVQMIALGGTIGTGLFLGAGTSITKTGPSIIFIYAVIGI FFFLMMRAIGEMLYKDPSEHTFIAFISRYLGPKMGYFAGWSYWLELIFIGMAELTAISTY VRFWFPNIDAWMIQIAILVILAAVNLIAVKLFGEAEFWFAMIKIIAIIAMIVTGIIMVTT SFKTPIGHAGLNNIFEGFKFFPNGIVNFIGAFPMVFFAFQGMEFVGITTAETKDPHKVLP KAINETIYRILLFYIGAIIVIMAIYPWHSLSANQSPFVQVFALAGLKAAAGVINFVVLTS ASSSLNSFLYSAGRHFYQLASESQGTLMPKFKSVSKSGVPAKAIVFSAALIMLAPVISSI PGIENAFTLICSATSDLALVVYLLTVIAHYKYRQSIDFDPNGFVLKGYKWIDPALIGFFI IIYLSLFFNGDGTIPAIAGLIWCIGFGLWSSREKSSVSIPNTESKDSEL >gi|238617817|gb|GG669604.1| GENE 388 394281 - 395456 1318 391 aa, chain + ## HITS:1 COG:L56488 KEGG:ns NR:ns ## COG: L56488 COG0436 # Protein_GI_number: 15672039 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Lactococcus lactis # 3 385 4 389 391 352 44.0 1e-96 MELNDINPNVLNVKPSSMREFDHEISADPQIVKLTLGEPNFDVPAHIKQAAIDAINDNYS HYPYFWGYAELREAAAKYYQEKFGYHYTADQIVVTVGATEAVADAVATLFQPGDAVILPS PAYPLYDASIAMHGLKQVRIDTSKTDYILTPEAVQQAIDDNPGLNIRGLIITDPNNPTGV AYTEEQLKALVPVLKENRIWVISDEIYGELTYGQKHCTLSTWLPDQTVIVNGLSKSHAMT GWRLGYVFGPKGFIDEIAKVHQFTVTTPTSIVQYAAIEAMKHGQNDAEVMRKQYEKRRDF VVKNMREAGFDVVHPGGAFYVYAKIPASLHMDSWTCARTLAKDYHIGLFPGASFGDDASI RISYAASDEALKAAMTAIKKLVADKSVVGDK >gi|238617817|gb|GG669604.1| GENE 389 395576 - 396208 477 210 aa, chain + ## HITS:1 COG:L1734467 KEGG:ns NR:ns ## COG: L1734467 COG0110 # Protein_GI_number: 15673662 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Lactococcus lactis # 3 190 4 193 203 182 46.0 4e-46 MPSEEQRMLSGKLYNVYDKELGKKYERKDQLLHQINFPIPDVDPQAKLTELIGKMGQNCY IEPPFFCDFGDNITLGDDVYCNTNCIFLDSGKISIGSRVLIGPRVNLFAAGHPIDAGVRN KWLGFGKPITIGDNVWIGGGTTVNPGVAIGKNVVIGSGSVVTTDIPNNVVAVGNPCHVLR KITEQDKIYWQAEETDYVEDRGPLGSPDIQ >gi|238617817|gb|GG669604.1| GENE 390 396291 - 397727 1312 478 aa, chain - ## HITS:1 COG:BS_lmrB KEGG:ns NR:ns ## COG: BS_lmrB COG0477 # Protein_GI_number: 16077336 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 30 478 19 478 479 335 45.0 1e-91 MEKSLETRDALAQEKKDQAAKPVTHPFIAMLGMLIGGFVGMLSETSLNIALPSLMTALHV NIGTIQWLVTGYMLIIGIVLPLSSLLSRIFSTRQIIVFAIIAFIVGAIISALASSFPVLL IGRMIQGIGTGLILPLMFTVATLIFPPYKLGAAMGLIGLVIMFAPAIGPTLSGMILGVLS WQWIFWMFVPFLIIALILVMKYLPNVGHITKPKIDVFSIILSTLGFGGLVTGVSLASDQG WGSPTVIATLIAAIILLAWYIKRQLSATEPILNFHIFANRQYRTGAILVMMDFGIILSSM YLLPMFWQNGLAIPVVLTGIVMLPGGIVNAAVSAIAGRYSDLISKRLLSVSGFAMTIIGI VLFLFANSTSPIWYVILAHIVMMIGVPLSMSPSQTFGLSALDQRTSSDGSTIMNTFQQIV GAIATAIATALLGFGQQLSATTHQIAFTNGVHLGFIFTLIIAVAALLLSLTMKERKIN >gi|238617817|gb|GG669604.1| GENE 391 398111 - 399457 1035 448 aa, chain + ## HITS:1 COG:SP1306 KEGG:ns NR:ns ## COG: SP1306 COG0334 # Protein_GI_number: 15901165 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 1 448 1 448 448 590 64.0 1e-168 MSNAKSYIESVKDTIQRRDPNQTEFQEAAFTVLDTLEPVLDKHPEYIKANLLERLVEPER AIQFRVPWQSDDGQFHVNRGFRVQFNSAIGPYKGGLRLHPSVSLDVVKFLGFEQVLKNSL TGLPIGGAKGGSDFNPKGKSDSEVMRFCQSFMTELQRHIGPDLDVPAGDIGVGGREIGFL FGAYKRLNGYQNGVLTGKGLTFGGSLARPEATGFGLLYYTHAMLKALGDTLTNKKIKVSG AGNVATYAIQKATEYGATVITCSDSDGYVYDPNGIDFKLVKQIKEVERGRIKEYAQRVET AEYHDGSVWDFDINYDIALPCATQNEISKDQAKLIAKDRVKYVCEGANMPSVPDAIATYR DNNIYYGPAKAANAGGVAVSALEMSQNSERLSWSFETVDNRLHDIMDNIFEISEAADKEY QLNQDYQAGANIAGFEKVAQTMMAQGLV >gi|238617817|gb|GG669604.1| GENE 392 399554 - 400861 954 435 aa, chain - ## HITS:1 COG:lin0289 KEGG:ns NR:ns ## COG: lin0289 COG0624 # Protein_GI_number: 16799366 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 18 434 1 378 378 289 38.0 7e-78 MPLNDDTYHRKHGVDIFMKEKDKIQIVRDLIAIRTVNDNEQQAADYLVSLLHKHGIAAKS IIQFPGRSNVVAEIGDGQHPKLGFSGHLDTVHEGQLSTWKTPPFEATLKDGRIYGRGTSD MKAGLAQFIITMIDLHDQNLPKHGTLRLLATISEELTEEGAAFLSNEGYGDDLDAMLFSE PTGVPTDQLDTYFSSGAAIISPKKLDELYTALEDSSAPEQHFIINAHKGWMSYTVTSHGK AAHSSMPKLGINAIDNLVQYYIAEKALYHSLTERNPNLGKTVYAPDVFIGGKQVNSIPDL AYEKVKVRTIPELPNEKLVHKLQELVRELNKKPNFDLKLDVEQSENPVANRGTNQLATIL QAHAKATLREALPLPTIGSSMGTDASEFRRHNSTGEFLIIGPGNTTAHQSNEYVEIATFL NMQQLFKQVAIAYLN >gi|238617817|gb|GG669604.1| GENE 393 401074 - 401625 618 183 aa, chain + ## HITS:1 COG:lin0961 KEGG:ns NR:ns ## COG: lin0961 COG1704 # Protein_GI_number: 16800030 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 183 4 185 185 187 52.0 6e-48 MTWIILGVILIIIILMIVVLYNGIVSQRNLVDEAASQIDVQLQRRADLLPNLLETVKGYA KHERETLATVTQMRAAISDPSASLSDKVKADNQLTGALNHLFAVSENYPDLKANQNFLSL QEELTNTENKVAFSRQNYNSNVMAYNNKLQTFPSNLVSKFGNFPVRDYLEAPEGSKEVPK MKF >gi|238617817|gb|GG669604.1| GENE 394 401648 - 402649 897 333 aa, chain + ## HITS:1 COG:SPy0331 KEGG:ns NR:ns ## COG: SPy0331 COG0501 # Protein_GI_number: 15674492 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Streptococcus pyogenes M1 GAS # 6 329 4 298 298 221 42.0 2e-57 METINQQIIQNRRRTWLVLAGFIFLIAVIGFLLGLIFAYQSDQADIMVPIYTMLGFLVGA AIYTFFVYMSVTNILMRSSKARQLQESDDPTLFNIVSDLSLAAHIPTPDIYMMDEQAPNA FATGRDPQHAAVAVTSGLREMMNREELEGVLAHEISHIKNYDIRVSSITVALTTFIAGAG AVMIIAGISMMRGGNWLGFFGGGSRDRDSKDSSYFWLAVLAFGFIVWLGGWIVKIIGVPI AQIMQFAVSRQRESLADVSGVNLTRDPQGLIDALEALKDDSTPMKNPEAKGAALYINEPT NKHGQTPFLVKLFDTHPPLDERIDRLKRLLGEH >gi|238617817|gb|GG669604.1| GENE 395 403034 - 404212 970 392 aa, chain + ## HITS:1 COG:L0181 KEGG:ns NR:ns ## COG: L0181 COG0626 # Protein_GI_number: 15672763 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Lactococcus lactis # 1 379 1 379 380 394 53.0 1e-109 MSEFDTKLVHGQSQHDNQTGAVNVPIYNSSTYIFPKVDSKITWDYARSGNPTRNYLEDQL AALENGTQGFAFSSGLSAIHAVLSIFSPGDHIIIGNTIYGGTFRLINQFFKRWDLKFTEV DTQNLDEVEKAIQPNTKAIYFETFTNPLLKVTSVKAISKVAKAHHLLTIVDNTFLTPYLQ RPLDLGADIVVHSATKYLGGHSDVVAGIAVAKDKAIADRIYFNQNGVGAVLSPEDSNLIR RGIQTLAVRLDRHLSNAAKIVAFLQNRPEVSKIYYPGIEGSKDYEIATAETNGYGGIVSF ELKKGLKTTEFVENLNLIQLAVSLGAVESLIELPYKMTHAELSPEEQLEAGITHQLVRLS VGIEDPKDLIHDLSQSLDQLSKDKVIEESSGR >gi|238617817|gb|GG669604.1| GENE 396 404533 - 405579 1005 348 aa, chain + ## HITS:1 COG:MK0601 KEGG:ns NR:ns ## COG: MK0601 COG0715 # Protein_GI_number: 20094039 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Methanopyrus kandleri AV19 # 52 339 41 316 319 77 27.0 3e-14 MNYKKVLGSIVGVLAVTLTLAGCGSNSAKQQATKDYKYGSVTIPAKDGSICNAPNYIAYE KGFFKKNGLKANLVANPRDISDLEAGFASGKYDAQNGDFQYLPAIQNGAQIKAAGGIHQG CIKLLVPKNSNIKSVKDLKGKTIGIPAQGSTPQYVTSIALQHAGLDPKKDVTWKVFSTDL LAKAAQKGEVDAIGTVDPYAYQAQKQDGFKTIVDNNNDNGNNAMAKMGMKKKGSCCYLYL SNKLIQSNSKKAKAIVKSYQEAAAWINKHPEETAKIELNKGYVSKTKFINVANVSQIIKD EHFDLNLTKGKSDLNYYISQLKQAGYLKKDTKNAQLLKQAYWNPKLGN >gi|238617817|gb|GG669604.1| GENE 397 405595 - 406614 974 339 aa, chain + ## HITS:1 COG:PA3448 KEGG:ns NR:ns ## COG: PA3448 COG0600 # Protein_GI_number: 15598644 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Pseudomonas aeruginosa # 146 335 76 265 274 105 32.0 1e-22 MLDAVTLSKKQRSKAVKQDKAETKYWKPWRTSWNILSLAAVIAAYVENQLVPSQELVNNG AYKWFLIAYFIYLVAVYVIGAVVHGRIRVYGGHFAQLNAVLGLLLIGQDLLTEKFAVIKL PFFVSFAQILDQIKTDQKLLIESTWSSLGLWLISFIIGTLIGVVLGLFMGRYRQFNYWSF PFLKVIGIIPAAAWMPLTMVIFPTSYMAEIFLIAFAVWFPVAFMTIGGVQSISTDYFESA KTLGFSEFQILRKVVIPGALPNIFIGIFTAMGLSFTMLVISEMIGAKVGLGWYINWAKGV GNYTQVYAAIVIMAVLFSVIFSFLNKLQEYALRWRQRSN >gi|238617817|gb|GG669604.1| GENE 398 406631 - 407389 237 252 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 24 220 21 219 311 95 33 5e-18 MVQLSVQNVNRILHDNAGQRINVLEDINLSVGSGEFISIIGPSGCGKTTLLRLISGLDRP EEGKVTIDDQLITRPDVSRGYVFQHGSLFPWETIRENISSGLKAVHGRHYDKKLVDHYIE LMGLKGFESAYPHQVSGGMAQRAALARSIVLRPELLLLDEPMGALDAFTRADVQDVIQRV WKQTKTTMILVTHDIDEAIYLGTRIVVMTPRPGRIKEIVSNPLTFPRDRTSNQFLEFRRE IQDKLNFGVAEN >gi|238617817|gb|GG669604.1| GENE 399 407415 - 408446 883 343 aa, chain + ## HITS:1 COG:MK0601 KEGG:ns NR:ns ## COG: MK0601 COG0715 # Protein_GI_number: 20094039 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Methanopyrus kandleri AV19 # 55 327 45 300 319 69 24.0 9e-12 MKVKHIIISALGLLLVAGGLAGCGNKQSADSTKGYKNGTITIPAKNGSICGAPNYIAYEK GFFKKNGIKANLVAKPTNIADLEAGFASGKYDALNGDFQYLPAIQNGAQIQAAGGIHQGC IQVLVPKNSSIKSVKDLKDKTIATPGQGSTPQFVASIALQHAGIDPKTGVTWKTYDYDLL AKAAQKGQVDAIGNVDPYAYQAIKEDHFRVIVDNNNHAGNNEMAKMGMKKDGSCCYLYLA DKLTKQNPKKAKAIVKAYQEAADWINKHPQQTASILLNKKYVSSSKFVNQKNVSNLIASY HFGLKKSKGKADVTYYANQLKQAGFLKSDTNVKQLVNKAYYDG >gi|238617817|gb|GG669604.1| GENE 400 408453 - 409550 891 365 aa, chain + ## HITS:1 COG:CAC0566 KEGG:ns NR:ns ## COG: CAC0566 COG2055 # Protein_GI_number: 15893856 # Func_class: C Energy production and conversion # Function: Malate/L-lactate dehydrogenases # Organism: Clostridium acetobutylicum # 20 354 25 360 369 243 38.0 4e-64 MEVTSVRIKVSKEKQFIERIYNGYGFSRKDSALIADTLVDADLRGITSHGVQRLAMYDRK IRSKYIIPYNKWTVLNQTKTSVLVDANHTMGQLVSVFAMDHIINKAQRHGLAIGIVRNSN HFGAAGYYARMAAKKGLIGITSTNTNPLLVPPHARQPFLGSNPLAFAFPTRTGSFVFDAA TSTVSLGKIEVLLKNNRQVPGEWAIDGNREQQNDPQTILDELSRAHRLGGILPLGGLDEA NSNYKGFGIFLIVECLTSILAQGSISADLGNKNHDISHFFLALDPTLFGSLDDIEGSLSD MLERMRHLDHLPDDEITIPGDKEIQNYDKNQTNGVVVDEKTLNEVNEIADRLGVSELVTS NTIRE >gi|238617817|gb|GG669604.1| GENE 401 409557 - 410861 1063 434 aa, chain + ## HITS:1 COG:lin0604 KEGG:ns NR:ns ## COG: lin0604 COG2873 # Protein_GI_number: 16799679 # Func_class: E Amino acid transport and metabolism # Function: O-acetylhomoserine sulfhydrylase # Organism: Listeria innocua # 3 430 4 423 425 347 41.0 2e-95 MTEEKFDTLRIHGGYDPAKHNNSATVPIYQNVAFALGSAERGEAVAQGTVPDAYMYSRVG NPTVGVLERRLAALDGGTEAVAVGSGMAAITYAILNVAEGGGRIIAPYDIYGAALDEFET LFPKYGINFDLVGNINDFDEVKSLIQPDTKAIYVESVANPTTEISDVEKLARIAHEAHIP LIVDNTFSTPYLFKPIQYGADIVVYSSTKGISGHGNVVSGVIIDGGHFDWENSQFPQFQE NEFILKSAEHPENYSYTTVFKNQAFIKRIRMKYLRLMGAVLGPFDAYLELVGLETISERL DKEVATSLKIANYLEKNPHVKAVYYTGLPDSSQYSLAKKYFPKGIGTVLSFELNGTAEQT KKVVDAVKLFLYLPNVGDSRSLIVNPIKITHREVPEDRRAASHITDQLLRLSIGLEDSDD LISDLDQAIKTAFE >gi|238617817|gb|GG669604.1| GENE 402 410872 - 412026 895 384 aa, chain + ## HITS:1 COG:L182020 KEGG:ns NR:ns ## COG: L182020 COG1473 # Protein_GI_number: 15672938 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Lactococcus lactis # 8 381 5 378 379 349 47.0 5e-96 MTIDTKTNILPEIINLRHQFHRHPELSNQEFETTKQIAAILSNWGISIVPTDLDTGLLAE IKGGQPGPMIALRADIDALPVQEQTDLSFKSENPGVMHACGHDLHFSSLLGAAYVLNAQK ETLKGTVRLLFQPAEEAGHGGDQVLAKHVLDGVRGIVGFHNNPNLPVGQIALQAGPLMAG CYRFLVTIHGAGSHGARPEKGKDPIITQAAIISQLQTIVSRSNNPFDAVVVSVTKVRAGK TWNVLPGVATLEGTVRTFSDENTALVKKRFYSIVNGIADAYEQTADIDWSVGAYPIKNDP TITAVVKSGLKAKVIKPELTMTGEDFATFEAQIPGTFAFIGSNGRPNASDLHDPGFVGED ETISAAIDYFVQSANSLLTYFNSK >gi|238617817|gb|GG669604.1| GENE 403 412036 - 413229 814 397 aa, chain + ## HITS:1 COG:L56488 KEGG:ns NR:ns ## COG: L56488 COG0436 # Protein_GI_number: 15672039 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Lactococcus lactis # 2 389 1 389 391 321 41.0 1e-87 MIDISSLIKNDLHKVAPSLIRQINNRFGQIPDIVNLTIGEPDFQTPDHIKLAAVQSILNN RTHYAPNRGTKELLTAISNYLASRFGLDYDPDDQIVVTNGASEAISTVFNGIIGPGDAVL ISSPAFSLYHTLTLLSGGIPIEVDVSSTGFKLTPDVLDRYLTQYGDKIKMVVLNYPNNPT GVTYTPNEVRELAAVLRNYQVAILSDEVYSELAYFDEHVSIATYLPEQTLLVNSVSKSYA MTGWRIGYLCGDRTVIKELAKVHQANVATVGTPNMDAATEAFLFGDQDIRRMKGVYDRKR DYLCKALEKIGYEFVSPRGAFYIYVQVPKTFQGTAMAYAEQLAQDALVAVVPGEAFENGH STYFRISYATSMKNLQLAVQRLAEYVKRQSEKEVLKP >gi|238617817|gb|GG669604.1| GENE 404 413226 - 414224 923 332 aa, chain + ## HITS:1 COG:SA2312 KEGG:ns NR:ns ## COG: SA2312 COG1052 # Protein_GI_number: 15928103 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 321 22 341 351 211 36.0 1e-54 MTKILAYHVRDDEQFFIDEWANQHHIQVDSVPYELHDDTVDRAKGYDGIDYKQRSILSSR PDLYRKLHDFGIKQLSARSAGIDSANLNWAKQNNLRVTNVPSYSPPAVAELVLTQVMQLI RHIPQFNQRLNRNDYVVNGLRSRELSELTIGIIGVGRIGGTVAKIFHALGATVLGNDIAS PRDDLKGILTYTSKEDLYRKSDIVTVHVYYAKQNYHLIGEKQFDLMRDTTFFINDSRGPV VNTNALLAALHEKQLAGAALDVVENETNIFNLKFDEKTPEPLYNALKELPNVLLTPHIGF FTDKAVENMVKQSLDDTLAIIEGRHSEHEILL >gi|238617817|gb|GG669604.1| GENE 405 414241 - 414660 503 139 aa, chain + ## HITS:1 COG:Cj0225 KEGG:ns NR:ns ## COG: Cj0225 COG0456 # Protein_GI_number: 15791597 # Func_class: R General function prediction only # Function: Acetyltransferases # Organism: Campylobacter jejuni # 4 139 3 138 148 107 38.0 4e-24 MVQIRKMKVTDYAAAYALWESVPGMNLASLDNSEQGIARVINKNPDLCFVAVDDEKVIGT ALGATDGRKGYLYHVAVAKSYQGQHLSTQLIDRVTTGFKNKGIDKIGLFVVIGNEEGKNF WKHQGFKERPDIKYLDLDL >gi|238617817|gb|GG669604.1| GENE 406 415044 - 416042 699 332 aa, chain + ## HITS:1 COG:STM2573 KEGG:ns NR:ns ## COG: STM2573 COG1893 # Protein_GI_number: 16765893 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Salmonella typhimurium LT2 # 1 309 1 303 305 174 32.0 2e-43 MKFVMVGAGAMGLRYGVLLQEAGNDVTFVDTWQQHIDKVRQQGGVYVMRDHKDRHLVKIK LETPETYHGDPDVVVFFVKQMQLNDYLKRCAHFFNDRQYAFTCMNGMGHIEKLQKYFADD KIIGGTALIATVLPGPGEVDFMGKRGAGMMNMCPLNEKPDEMCQRLYNELEKAQMNPTLT KDFTGTLMTKVIFNSVMNSLCTMFEIPMGEFGNFSGAREMARQLIDEAYDICARADIKLV STREQELASLDHNSRIDMPLHYPSMCQDMFKDRPTEVDYINGYIAKLGRKYHYEAHTHLF VTQEVHLAEYHRQNEAKKRQMKESTRASVKSA >gi|238617817|gb|GG669604.1| GENE 407 416552 - 417250 511 232 aa, chain + ## HITS:1 COG:BH0171 KEGG:ns NR:ns ## COG: BH0171 COG0765 # Protein_GI_number: 15612734 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus halodurans # 4 228 19 231 233 194 52.0 1e-49 MWHIIQTSTPQLLEAGFKYTIPIAIISFVIGLIIALFTALIRLSSKRGAFLMLKAIFRFY VWLFRSTPLLVQLFIVYFGLPYLKIKGIFPNGIQLNPVIAGIITFSLNTGAYCSETIRAS ILSIPEGQWEAAYSIGMTKSVVLRRIILPQAIRISLPPLANSFISLVKDTSLAASITIVE MFEVSQQIAAQNYQPLIMYSLVAVYYAVFCTVLTWLQGYLEKVTSRYVTTTR >gi|238617817|gb|GG669604.1| GENE 408 417263 - 418018 527 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 228 1 227 245 207 45 1e-51 MLKLENLTKTFGNHQALKNISTTFPENQTTVIVGPSGSGKSTLLRSLNFLEKPESGHYYF DDLDIDLSKPISNQTILNIRRHTEMVFQGYNLFPHLSVIKNVMEGPVQVLHKNKIEARKQ AAELLAKVGLEEKADVYPAQLSGGQAQRVAIARSLAMHPDYIFLDEPTSALDPELELEVL KVLLQIAKEKQSMIIVTHNLAFARQVADKMIFVEDGRILFDGSEHDFFATDNKRILDFIS AMTFSDLEEDS >gi|238617817|gb|GG669604.1| GENE 409 418018 - 418833 914 271 aa, chain + ## HITS:1 COG:HI1080 KEGG:ns NR:ns ## COG: HI1080 COG0834 # Protein_GI_number: 16273008 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Haemophilus influenzae # 19 270 8 257 257 168 38.0 9e-42 MKIGKGIKRFALALGVVATGVLLTACGSSNSSSKGGYTSELKQSKQLTIGLEGTYAPYSY RQDGKLTGFEVDLGKTVAKKMNLKANFVPTKWDSLIAGLGSSKYDVVLNNIAETPERKKS YIFSTPYIYSRYALITKAGDKSIQKLSDVKGKKLAEGTGTNNEAQAKKLGAKTVPSGDFT TTLALIRQGRVQGTINAREAWFAYAKSNSTKGLTYHKVSDSQAEPVNISAMFNQKDTKLK AKFNKVLQQLRKDGTLTKLSQKYFGADITKE >gi|238617817|gb|GG669604.1| GENE 410 419245 - 420243 957 332 aa, chain + ## HITS:1 COG:STM2573 KEGG:ns NR:ns ## COG: STM2573 COG1893 # Protein_GI_number: 16765893 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Salmonella typhimurium LT2 # 1 309 1 303 305 171 32.0 2e-42 MKFAMIGAGAMGLRYGILLQEAGNDVTFIDTWQPHIDRIREQGGVYVMRDHKDRHLTKIK LETPESYNGDPDMFIFFVKQMQLDGYLKRCAHFFNDRQYAFTCMNGMGHIEKLQKYFADD KIIGGTALIATVLPGPGEVDFMGRRGAGKMNMCPLDEKPDEMTNKLFNELDKAQMHPTLT DDFTGTLMTKVIFNSVINTLCTMFEIPMGELGNFKGFYSMGRQLIDEAYDICARADIHLV STRDEEMTALDRNVRIDMPLHYPSMYQDMIKDRPTEVDYINGYIAELGRKYHYEAATHLF VTQAVHLAEFHRQNEAKKRAAKKQAELQRQTA >gi|238617817|gb|GG669604.1| GENE 411 420248 - 421090 670 280 aa, chain - ## HITS:1 COG:CAC0217 KEGG:ns NR:ns ## COG: CAC0217 COG0077 # Protein_GI_number: 15893510 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydratase # Organism: Clostridium acetobutylicum # 2 251 3 245 275 160 36.0 2e-39 MKLSVLGPEGTFADAAAKAYLKTQPYTNVIFDYHPTFDQVYQAVTGENIGLLPLENQLDG YVSATLQRLQIADVTEIGEMTIPVNFGLVANADSLTHIKRLYVQFKTEGQCQKLLSRMPG IQIITTSSNMISLEKFLSGEKGDAAIIPQSQMADQSAPFMLENVADQDDNSTRFIIFKAK PAKLDDLSRLTLTTNHFKAPLFIRPSSNDKPGTLYDILGYFAKADLNLITLMSLPTKTQL GEYSFYIEVSGTRDQQEVIFATLRDMASKYNVHLLGFYAD >gi|238617817|gb|GG669604.1| GENE 412 421384 - 422319 652 311 aa, chain + ## HITS:1 COG:lin2180 KEGG:ns NR:ns ## COG: lin2180 COG1073 # Protein_GI_number: 16801245 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Listeria innocua # 20 306 20 315 319 231 40.0 2e-60 MKRSIVRPLLIPLTAVTAGSFLLSYHLFKFAFERVDHVPPTSKEKQKYADAYYDYVDWMK NVPSKTWILNANSPENKVVASFIPADKPSKKTVIIAHGYKGNRETMANYVKMFHEMGFNA LVPDDRGHGESSGEYINFGWLDRLDYLRWIKRVIGYVGEDSRILLFGVSMGGATVEMIFG ENLPSQVKALIADCGYSSIREELTYLLKQQFHLPEYPVEPLVSQINHHVLGFSLDKVSST HQLAKNKLPILFIHGGRDTYVPVGMAYENYQATKAPKQLWIVKNATHAESFWYNPEAYRD RVMTFLKTYFR >gi|238617817|gb|GG669604.1| GENE 413 422412 - 422729 57 105 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKAEAIIISLSLFCILTVIIKQKCEKKATSCYATGLSPIVLWKLTVFSLFLKQICYSFQC TKEYGNSIRSNGTKRHPYSSPSYLGTIKITSNQYHITSILGPYAL >gi|238617817|gb|GG669604.1| GENE 414 422816 - 423232 556 138 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0185 NR:ns ## KEGG: Lbuc_0185 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 138 1 134 134 67 52.0 2e-10 MKKIATFVTALSLALPFAFAAAPLAANASVTSSQTVAAKTAGTTYTMTKKGATFFKKAKF YHTKDKSPVYYKGAFAADSATFTMTKYSTLNSAKTYKVTRSVTGIAKKTHKTQTFLYVKG YGWVKSYSLTKGIFKQAD >gi|238617817|gb|GG669604.1| GENE 415 423440 - 424042 658 200 aa, chain + ## HITS:1 COG:PA2575 KEGG:ns NR:ns ## COG: PA2575 COG3560 # Protein_GI_number: 15597771 # Func_class: R General function prediction only # Function: Predicted oxidoreductase related to nitroreductase # Organism: Pseudomonas aeruginosa # 1 199 1 198 200 207 49.0 1e-53 MKEQLLNLAKNRRSIYALGRNVDQTPDEIANLIKENIKWAPTPFNNQTTRAVILFGDNHE KLWDIVANRLKSEVPTEEAYQKTLNKINGFKAAFGTVLFYTDTDVVHRFENDFALYADNF ADWSEQAQGNAQFSVWTSLAENGIGANLQHYNPLIDDQVKEAFGIPDSWNLRAQLDFGSI EGPAGEKEFMNDDDRFKVLK >gi|238617817|gb|GG669604.1| GENE 416 424216 - 425325 558 369 aa, chain + ## HITS:1 COG:SA0341 KEGG:ns NR:ns ## COG: SA0341 COG4292 # Protein_GI_number: 15926054 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 300 10 308 377 114 28.0 4e-25 MKSKEVSNFELFYDLIFAYAISRITSVLHIINSERIPVLDVAEFLMMMLVFWTIWTYQTV FANRFYHTNLSHVVFLVFNMFWVVILSQSINTNFEQTHATFAGATSVLFMSLAVQYLIQA KRNKSQEVRHLCIQLGSLLTSIAVIGALTMIQWGNYGLRFSIYAITIFMAAFVPIGMKKT LRHFPTHFDHLTERYNLFTIILFGESIISVAGTIDSLNVHIDSLLFFIIIALLFSIYILT YDLGINRHLITAGLVLIHAHYFVFVGIELITASLELFMNQELTQTYFIWLLIIGLFFFLV PESVVLFVYGQKGRRSAGNVFFILAGFFVLLGIIANFKVEISMIYGLIALSILVLCYLWW RVLLRGQRY >gi|238617817|gb|GG669604.1| GENE 417 425416 - 426387 1072 323 aa, chain - ## HITS:1 COG:SA2098 KEGG:ns NR:ns ## COG: SA2098 COG1052 # Protein_GI_number: 15927885 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 320 1 317 317 315 54.0 6e-86 MSKVLIAGRIPEHALNILKDAGLDIDVYDDSKSLITKDELSKRITDKDFLITPLSTQVDS DVIDKAPNLKLIANYGAGFNNIDVDYAKSKGIPVTNTPKVSTVSTAEVTCGLMIALSHRM MEGDTLMRHEGFSGWAPLFFLGHELAHKTLGIIGMGQIGQAVAKRMHAFDMDILYTQRHQ LDPETEKTLGAKFTTTDDIIKNADIITLHLPATPKTHHMIGAEQFKQMKNSAMLINAARG PIIDEAALYDALVNHEIAGAGLDVYEKEPHVDDGFKSLKNVVLTPHIGNATVEARDAMAE IVAKNTVAMDKGDKPKYVINGVE >gi|238617817|gb|GG669604.1| GENE 418 427103 - 428506 1007 467 aa, chain + ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 12 434 5 427 449 323 42.0 5e-88 MKDLQDLNPNPLTKKEYFVVSSMLFGLFFGAGNLIFPIHLGQLAGSHWVLATVGFLVTAV LLPLLSVLAVSVTRSEGVYDIGVPLGSVFALVFMVLIHLTIGPLFGTPRTATVPFTVGVQ PMLPASWAHVGLFVFSVLFFGAAFLVSYHQSNVMNSVGKLLNPLFLLLLFSVFLMGAVHP MGSASHQAATAAYQHAGFFNGFLQGYNTMDALAGLAFGVTVVTAVRQLGKTRPSSNAKVT AKAGVFATSMIGFIYVVLIWLGATTLANYKVSADGGVAFNQLVTYYLGGIGHALLATLIT VTCLTTAVGLVAAFAQDFHKHFPKVSYHTWLALTCFASFFTANFGLDQIILWSTPMLMFL YPFAMVLILLSVFSPFFNRDPLVYALVVGFTTVPALLDMVAAFPPVVSQSAFGQTLGAFQ HNVLPFASLGMDWVAPAVVGAVLGLGLHFLRPVFARSGQTTSEHVSK >gi|238617817|gb|GG669604.1| GENE 419 428584 - 428670 59 28 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLVIFHQFIKVPPSALNLKQASKAKKVE >gi|238617817|gb|GG669604.1| GENE 420 428645 - 428857 95 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227511277|ref|ZP_03941326.1| ## NR: gi|227511277|ref|ZP_03941326.1| hypothetical protein HMPREF0497_0399 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0519_1194 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0497_0399 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0519_1194 [Lactobacillus hilgardii ATCC 8290] # 1 70 29 98 98 102 95.0 9e-21 MNWWKMTSILWLVLFIVGAAFLWLRKTDATGAINTPAYQMTSLAIWCVLFGFILIIQLIW FVIMRVRHRK >gi|238617817|gb|GG669604.1| GENE 421 428937 - 429554 632 205 aa, chain - ## HITS:1 COG:RSp0661 KEGG:ns NR:ns ## COG: RSp0661 COG1335 # Protein_GI_number: 17548882 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Ralstonia solanacearum # 1 205 1 206 212 237 56.0 9e-63 MTSFPKRGADDRLLSPENSLITFIDYQSTQINSIGSMKHADLVHNAVLVAKIANQYKVPI VLSTVNVHTGRNQDTISPLKKAIGDVPSYDRTSINAWEDKDYNDAIKATKRKKIIMLGLW TEACLTFPTIDALAEGYDVYPVVDAVGGTSPLSHETALRRVEQAGAHLITIPQLICEYQR DWNRTDTVPGFVQDLFEDGAFTPLQ >gi|238617817|gb|GG669604.1| GENE 422 429710 - 430438 614 242 aa, chain + ## HITS:1 COG:lin2703 KEGG:ns NR:ns ## COG: lin2703 COG5632 # Protein_GI_number: 16801764 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Listeria innocua # 32 242 68 271 770 188 46.0 7e-48 MISIEFEYKIVSKVATLVVKKQINSLFLTVLTVLIMLIIVNVAANAASVNHYISAHHYSP STITKQIWKGFPHYKYRHGKGKPEGVVVHETGNPNSTIFDEIAYMKKNYRNAFVHSFVDD DHIINIANTDYLCWGVGYPGNARFIQFEQIEMHSKKSFAHEVENAAYYTAYLLDEYNLKP NDAVYDGKGTVWSHGSVAKYMGGSDHTDPVGYYKKAGKKYFHKAYTMSQFYQLVLTNYKN IE >gi|238617817|gb|GG669604.1| GENE 423 430595 - 431503 812 302 aa, chain + ## HITS:1 COG:ML0337 KEGG:ns NR:ns ## COG: ML0337 COG0803 # Protein_GI_number: 15827093 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Mycobacterium leprae # 23 301 16 296 302 127 29.0 3e-29 MFRKILRFKFVLLAFLIVTLGIVAAGCSSHSSSSNGKIKITATTDFYGEVAKAVAGNKGE VTSVITNPNIDPHDYEPTTKVAKNIVGSKMVIANGIGYDGWMNKLVSSNKKTDYIKVGED LMGKKDGDNPHLWYNPKTMPKLANTIATKLGKIQPKNKQYFKKNAQKYIASLKPVEKKIT QLKQVSAKSKNKDVYVSEPVFDYALDAMGFKVGDSQFENDTEKDVDPSPKTIKAMQDGIK GRQIAFFVYNSQVDDKTVNNLVALAHKNKVPVLKVTETLPANKNYKSWMLSQYNSLLKIL EK >gi|238617817|gb|GG669604.1| GENE 424 431631 - 432350 683 239 aa, chain - ## HITS:1 COG:CAC1876_1 KEGG:ns NR:ns ## COG: CAC1876_1 COG3757 # Protein_GI_number: 15895151 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Clostridium acetobutylicum # 44 236 33 214 215 66 25.0 4e-11 MKKSNSLKLAALALATFGALFAGNASLSVQANTFSSNHPNADMVDISAYQGAQTNLGLQN MKDSGVQAMTIKATEGTFYTNPLLGQQTATAQSSGLSINFYHYAQFATKSQAKKEAKYFV KKVKGVTSQRNVVMAVDFEAPKLAHLSIATNDRNIKAFNKVVKAAGFSKTDIYTNANWVD SYVSMNTANLGWLANYPNNPTGKKYVAANAWQWTSNFKFAGQAGKLDVSQLNNSYYLND >gi|238617817|gb|GG669604.1| GENE 425 432587 - 433753 966 388 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0200 NR:ns ## KEGG: Lbuc_0200 # Name: not_defined # Def: glycoside hydrolase family 25 # Organism: L.buchneri # Pathway: not_defined # 7 387 6 380 380 481 74.0 1e-134 MTFNHKKTKLAILGMIAGGILLGTSVTANAALSPSSTLPKTDMVDVSSWQGNLTAADYQT MAGNGVKAVTIKATEGTYYTNPYLSQQVQYAQQAGLSVNFYHFVHFTSTDQAQSEAQNFI KAVQLVTNSKDVVMVADFESSELAGVSKSQNDANLAAFDATLNQAGYNKTDLYTMASWLG VHIDTNTSNNGWIADYPNNPTGSKYTSANAWQWASDYRFPSINQNMDVSQMNNDFYLNST AGSTTDTSTPTTGSSSSSSSSSLSSSSSSISSSSSSTTSGSTSSTPGEIVKVPGPSGKQY SASRSKSVKLVWRSNMGRHAYKTTDGARYSKHLGMRYGYNSDMPDITWYTDAHEKLYMKN SGHYAIYYHVKSADGQHGGWIWRGYLNK >gi|238617817|gb|GG669604.1| GENE 426 433828 - 434025 222 65 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0201 NR:ns ## KEGG: Lbuc_0201 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 65 1 65 65 76 66.0 3e-13 MHIFTKKFAGQSIISWFFQIILIWIAWAVHNGTLPNNVTTITFAAVILLAIYWSFSLDRK RSNNK >gi|238617817|gb|GG669604.1| GENE 427 434082 - 435032 718 316 aa, chain - ## HITS:1 COG:ECs4457 KEGG:ns NR:ns ## COG: ECs4457 COG2207 # Protein_GI_number: 15833711 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli O157:H7 # 17 288 15 271 271 84 25.0 2e-16 MLFSTFNIAKTLLYYKGGEFLAHGPWKHRRMYHKGDYELILCIKGPIYLQIGDRRVTLND HEVLFVPPFTTMYGYQDSKNDVDFYWLHFFSQYREDIFESEEDQMISEIKTNKQSKRKIF LPMQFKLSDYEEATILIHQILSIHNELSFIEERDYLVSALLIQLYKSYFNHPDSNEESSR INSIKEWIRANMSSTLTVEEIADNVSLNADYLTRLFKHCTGMTTLQYLNHIKIEVATLLL IRTEMPVKQVAYNSYFNDPKVFMRRFKSSTGLSPSEYRKSYNLIHLNNPHVDPQIPIPKR IADSIDYIPENGDIPE >gi|238617817|gb|GG669604.1| GENE 428 438137 - 439321 975 394 aa, chain + ## HITS:1 COG:SP1600 KEGG:ns NR:ns ## COG: SP1600 COG0477 # Protein_GI_number: 15901440 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 11 353 9 350 383 97 24.0 6e-20 MKSRSGLMAFSILMLSLLPMSTGASAATIPGLMKQFPGLAIETAELTVTIPSFTMALLIV ISSFLVKRIGTKKIVISGTAITAIGAIMSMLSPNMTVLLIARALMGAGIGLFNTLCISLI DLLYHGQQRERLLGFQNTFQGLGAAGGALIVGIILIYSKWNVAFAFYLIAIPILILYLLF VPEVRYDNAQFDTIEGQDRLSKFAKLQFGYYWVVLFMVMVFYMTVNVKIPSYILNNHFGS LSIGSSAVVIMSVGTIVGGMIYGNIEMVFRKLTLFLAVLIEAVSVIVISTATNAIACFVG GFGVGFAFGLFIPFIFSKGLSLVPKRYGNDATTVLMIATNGANFLSPYISKAINFGGTDQ SLFMISGVIAAGISIIELIKSLSADHFRISSQRV >gi|238617817|gb|GG669604.1| GENE 429 439509 - 441395 1620 628 aa, chain + ## HITS:1 COG:SMb20536 KEGG:ns NR:ns ## COG: SMb20536 COG4289 # Protein_GI_number: 16264263 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Sinorhizobium meliloti # 13 589 14 576 617 311 33.0 3e-84 MKRKLFNEQIKDNPLRSKADVKAALTDILAPAMTVLAQQKQKGRFRMSDSGAVYIQEKTE IEGFMRLLWGLGPFFSDKKRIYEYPQWYELVTQGILAGVDPKDPDYWGGDLGDYDQLFVE MGALTAFLYETKETFWESLSHQKQQQIVDWMDQVNHKVIPKTNWLFFRAMVNKFITDSGY HDNSTLIADDYAITNQHYLGHGWSYDGYKNQIDNYIPFAYQFFTILTVGLADWKGDQAEL LRKRATAFVPSYANWFAADGAALPYGRSLDYRFAQAAFWAASAYAHIDLPEGYTLGDIKH LLLNNLRWWFKQNIFTTDGLIPIGYSYPNMVFAEGYNGPASAYWALKTFIFFALPDDDPF WTTPENDEFKFEPVKKQPEPRMLVCHSKHGLEVQSFTAGQHSHEHANGEAKYEKYVYSTT FGFSTPKGSVLLKQGAFDNTLAVAESEDWWQTAFKYEDYAIHDDYVYSDWKPWDDVEIKN YVVPAMPWHVRIHQIDTNRQIHVAEGSFSAPDYGKSYQKQLPTKVENAIFYQTEVGITGI VGLSKELTAELSEPEPNTNIYFPKTKIPLQTGVLNPGKYTLVSLYLGDRELDSLDDNGQL VIPKVKLNNNKVSIIFKDHTVSVELKEF >gi|238617817|gb|GG669604.1| GENE 430 441663 - 442658 977 331 aa, chain + ## HITS:1 COG:SP1854 KEGG:ns NR:ns ## COG: SP1854 COG1609 # Protein_GI_number: 15901682 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 331 1 332 335 264 41.0 1e-70 MTTIKDVANEAGVSISTVSRILNFDDTLSVGEDTRRRVLEVAEKLQYKKRNKRAPKLGKQ IAIVQWHTDKEELSDLYYLQIQYGIENKAASLGASIERVTYESIDKNRIKNFDGIIAIGK FDTTEVTQLKSYGLPVICIGENYLGYNLDCIRSDFETPVRKIIDRFIRNGIDDIGMIAGK ELTVTEKQGVRDPRVATFNQYLKSKGLYNDKFVYQGPFGPESGFNLMTKAINELGEALPH GFMVGSDSMAVGVLRALQQHHIDVPNRVSLISFNDVAIAKYTSPALTTVHVHTELMGERA IEMLLERVKNPKKIPELIIIGTELMERESSI >gi|238617817|gb|GG669604.1| GENE 431 442803 - 443702 614 299 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_5115 NR:ns ## KEGG: Pjdr2_5115 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 9 299 14 307 314 254 43.0 3e-66 MDESLPNRYLFVYFAGEKYEDGENIYMALSEDGLNWHDLNHNHPILYSNLGTKGIRDPFI IKDPKNNNYYILATDLKIHGNNDWYNAQRSGSTSLLVWKSSNLINWSAPKLIPVAPKNFG CVWAPEATYASQTEDFLVYWASKTAVDNYAKQRIYCAHTSDFSHFSSPKIYIDRPFSAID TTIIKNNNRYFRFTKNEAEKYIIEDQLNSLEAKPTEILSPTLTDNLGVEGPTCYPLIGKK KWLLLVDNYAKGGYYPLETTDLTSGRFNRLPTDAYHMPSRARHGTVLPITQNEFNRLID >gi|238617817|gb|GG669604.1| GENE 432 444056 - 445867 1178 603 aa, chain + ## HITS:1 COG:uidA KEGG:ns NR:ns ## COG: uidA COG3250 # Protein_GI_number: 16129575 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Escherichia coli K12 # 5 600 1 596 603 468 42.0 1e-131 MEKGLLYPVINNYRSDEKMDGLWNFKFDPAYEGESKGWQNGFNDGVKMPVPASFNDFFTD KDAREYTGDFWYSKTFFVPEYFEGRDVQIRFGAATHRAVVYVNGQEIRSHEGGFLPFTAE VTNAVKFGEENIVSVKINNELHRDALPAGDTATLKNGKKMAKPFFDFYNYSGLNRSVHLL TVPKNGIYDYSTSYEVGDAEATVHYSIQADSGDDVKVSLINEDDQIVATGEGNTGDLKVD HPNLWNVRDAYLYTIKFELMNDGKIVDEYADQIGLRTIEIKGHEILVNHKSVYLRGFGRH EDSIYAGRGFDLNVERRDMNLMKWIGANSFRSSHYPYDEQVYKFADREGILVIDEVPAVG FKMAAASFLGGLNQSFFDGDWTHELYKKHLDQIIDMIKRDKNHPSVLAWSLFNEPDTSNE SAVPYFEKLFAATADLDPEKRPRTFTLNEDDTYETSKCLKFPDFYLLNRYPGWYHKWGYE ISDGEAGLRAELDEWQKSDIDKPIVFSEYGADTEPGLHKLPSIMWSEEYQIELLEMFDRV FDSYDFIRGEQPWNLADFQTVEGNMRVNGNKKGIFTRDRQPKAAAFYLKKRWTKLPLNYK AGK >gi|238617817|gb|GG669604.1| GENE 433 446000 - 448546 1748 848 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0208 NR:ns ## KEGG: Lbuc_0208 # Name: not_defined # Def: glycoside hydrolase family 59 # Organism: L.buchneri # Pathway: not_defined # 1 847 1 849 850 1273 70.0 0 MNETNFIIDGDKLDLNALNANTFKGFGYISCNNSSRLLLDYKWEHRDSYDQILTILFGGR HPLMRLLKVEMGIDANTSSGTEPATMRSLDDEANVRRGAGFQLIADAKKIQPELKTAILR WGEPGFLRKKWAKVKTNNPDNNVSEKVYEDMYQWYKKTIVAAYETYGYLIDYVDPDRNET KHPMYNWIKWFADRISNDQSGFPNGFPIQQYQQIKMIAADQNYERDFGDQMIADKALRVR VPAVGFHYNTDDSRNKSFTKLADDYHHEVWYSEGIAPMTFGKYRVKASNGDGIGGVQSGL DVANRLIKSYVNSRRSLYLFQPAVSAYYPGVNYSHKELIAASRPWSGFFDVDNVGMQCMK HFTDFAKAGWDDENAWRYLTSACDSGIGGTENLDHHTEAPSYMTLVSPDRRNYSVIFVND SAQPRTYHLSIKNIGSRANQPLDIWESIGPENSSDAYDSRMKRIRETIVPIDHKASIFVQ PHSMVTATTLDLKHDEDVIYHRIESLHNDQVLEDGSDILYTDDFQYRDYPSDYLASRGNT PRYTADQGGAFEIVQRHGKNVLQQMISEKYRALDWEYSFAPSLTVGDDHWRDYEVAVSMK FDDHTWQNSPTGNYFGIGLRELTDVKGRLESAPYVFKVSIDGACQLIKEDKVVGLAYVDG LDLSAEHQIKFSADGNHLLAEFDGKKVFDFVDTDNPKFSGRVKLGSGYYHTRINKIMIKK IADHPVISYRLDNLDDALNYSGNWTHVCGLGNTKWNRTLSHGEADGEKTPKLRFSFNGTG FSLIGRQESPSRLKLIVDGQVIDWNYQPQIGADRTENTKILGLQSETHQVEISVESGNYT LDAVDLID >gi|238617817|gb|GG669604.1| GENE 434 448622 - 449206 541 194 aa, chain - ## HITS:1 COG:FN0535 KEGG:ns NR:ns ## COG: FN0535 COG1611 # Protein_GI_number: 19703870 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Fusobacterium nucleatum # 2 190 4 189 192 164 43.0 6e-41 MKKVAVYCGASTGNDPIYTQAAIRLGNWLVDHHLELIYGGGGIGLMGTISKQVIKRGGRV HGIMPQELVDRGAELVELAKLSDLTVVKDMSERKEQMMILSDGCIALPGGIGTLEEMSQA FSWARLGNNPNPCVFYNVAGYYDSLKTMFDKMVTSDFLTQTDHDKLLFSSSLEEIYSFMT TYIPPKIRTYKSSH >gi|238617817|gb|GG669604.1| GENE 435 449345 - 450415 827 356 aa, chain + ## HITS:1 COG:SA1360 KEGG:ns NR:ns ## COG: SA1360 COG0006 # Protein_GI_number: 15927110 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Staphylococcus aureus N315 # 4 356 3 352 353 277 41.0 3e-74 MDKRVKKLQATIQELGLDAFLITNEFSLKYLSGFDGLDGDGCLVVTPNQVTLITDARYQE ALEQSLPKDVSLEITRDYYQIAKKVLDDEAYRKVGFETSVSYELYRTLYQLFGDQLVPEN NIVEKQREVKDANEVSVLKKSTLLASEGFSALVNYVRVGLTERQISNWLNNWMLENGAEK PSFDTIVASGYRSALPHGSASNKKLQRGEVVTVDFGYYVDGYTSDITRTIALGDPGDELK NVYNIVHEAQERMFKTIKPGADGQEVDAAGRDYIQQQGFGNYYNHGSGHGIGLDIHEGPN FGPRWKSNVIEENNVMTVEPGIYLPGKGGVRIEDDLLITKNGYEQITTADRDLIIL >gi|238617817|gb|GG669604.1| GENE 436 450855 - 451418 535 187 aa, chain + ## HITS:1 COG:SA2477 KEGG:ns NR:ns ## COG: SA2477 COG4720 # Protein_GI_number: 15928271 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 6 187 2 184 184 155 42.0 3e-38 MKSSKRTKGLSVEAVVATGVGIAIVFLLKRFLPIPTGVPNTTIDLGEAFIGFLGAVFGPA VGALVAFFAHLFNDLSWGDPWWTWIVADAIFGFLIGFSRNFLKLRTEPLTKKKLIQFNLL QIVANIICWGIIAPLGDILVYSQPAGKVFLQGATATITDILSVGIVGTLLISAYAKTQVQ KKRLTKD >gi|238617817|gb|GG669604.1| GENE 437 451422 - 453155 1304 577 aa, chain + ## HITS:1 COG:SP0483 KEGG:ns NR:ns ## COG: SP0483 COG1122 # Protein_GI_number: 15900398 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 3 569 2 556 560 553 49.0 1e-157 MREQPIIQFSDVSFQYQSQEEATLHNINLSIHRGEKVFITGPSGSGKSTLGNIINGVIPE EFPGKLTGKITINGQSQKDLDLTDLSFIVGTVLQDPDSQFVGLTVAEDVAFALENDAKPV DELHQKVAEWAQRLNLGPLLGKHPQDLSGGQKQRVSLAGVLVDNEPILLLDEPLANLDPA SGRDSMKLLNWLVAQQNLTVIIIDHRIEEVLQIPIDRMIVLAEGRVIADDTPDGILQQNL LLKNGLREPLYVTALKDSGINVSQVTHLSDLTNLKLSRDDYHKLVTWVKQQKLPDKPVSL LPIISLKNMSFAYPNEAAIFKAFNLTINRGEMVALVGKNGTGKTTLINLITGFLKPQNGD LFFGKENISHDSVKQRADRIGYVLQDPNQMISKTMIYDEVALGLQLRGMNSETIKKRVFD TLKITGLYPYRNWPISALSFGQKKRVTIASVLVLQPEVLILDEPTAGQDLAHYSQMMTFL EELNHSQGTTVIMVTHDMNLMMAYANRTIVLDKGGVLADASPAKVLTDKDIIEKAHLAQL SLQVLAEKAQVSDPIEFAEKFISYERRQASGKSTVVL >gi|238617817|gb|GG669604.1| GENE 438 453112 - 453969 579 285 aa, chain + ## HITS:1 COG:SA2475 KEGG:ns NR:ns ## COG: SA2475 COG0619 # Protein_GI_number: 15928269 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Staphylococcus aureus N315 # 25 284 16 276 277 224 47.0 2e-58 MRGDKPVVNQQLSYDVSGTQKGHWVTRLTGMTKILVLLSLSIIGMVSYDTWYLVALTIFA ITFYQSAHLRWHQVRGLLYAIAAFTALNLVLVYVFNPAYGSQIYGTSHVLVGHGFFVLTW EELFYLLNMLLKYVFIVPLILAFLFTTNPSELASGMNRIGFSYKISYAVELSLRYIPDVI RDFKQISLAQQARGLEMSRKAGMWKRLKRSTQILIPLVFSSMDKIEVTTRAMKLRRFGTN KHRTWYMTQKLAKIDYLILIVTVVLIMIGIGLFWVDGGRFYNPFR >gi|238617817|gb|GG669604.1| GENE 439 454042 - 454767 589 241 aa, chain + ## HITS:1 COG:L120396 KEGG:ns NR:ns ## COG: L120396 COG2071 # Protein_GI_number: 15674032 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Lactococcus lactis # 22 234 22 232 236 178 44.0 6e-45 MTVTIGIASNHLIHPTKRWGTNYVDYVQRDFVDGVRWANAVPLIIPLTEPKDAKVYVEKV DGLLLTGGQDVTSLLYGEAPLIQSGETDRYRDEFEIALVKEAVRVHKPVLGICRGQQVIN VAFGGSLYQDIQSQLGNSTKHEQYPTSWEIPTHYINTIAHSWLNDLLGDRFAVNSFHHQA IHKLATGLTVIATSDDGIIEGIQSNDGQVIGVQFHPEMMIRSYPTFRKIFAYFAKLVETV E >gi|238617817|gb|GG669604.1| GENE 440 454878 - 455228 376 116 aa, chain + ## HITS:1 COG:no KEGG:lp_2566 NR:ns ## KEGG: lp_2566 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum # Pathway: not_defined # 1 114 1 114 115 107 50.0 2e-22 MPSRPKVSTSDEYIKMAAPDTQPILQKLRTLIHQELPNAEEKILYNMPFFIFNNKKIGIA AYKAHVSLQISDDLSSEVVKLARKLGFETGQKRLNIGLDQQVPEELVLKILQMIEA >gi|238617817|gb|GG669604.1| GENE 441 455383 - 456168 581 261 aa, chain + ## HITS:1 COG:BS_ydeD KEGG:ns NR:ns ## COG: BS_ydeD COG0697 # Protein_GI_number: 16077583 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Bacillus subtilis # 1 246 46 293 319 171 41.0 1e-42 MLISGILLVLYGLLTDRKQNLMIWHHWRDALYLLFFSFVGMAASQYTYFKAIDYGNAATA TILQFLSPAIIIIYLALSTRSWPRRIDILSLVMALTGTILLVTHGQLTTLAIPARGFSWG LLTAMSATLYTLLPRKLLGKYGSIPVVGWSMLIGGIAFSIYYRVWTHMPDFNLATYGRIG FVVIFGTMFAYLFFLGSLQFITATTASVLGCFEPLSATFLSIVFLGVQFGIPETIGAILI IGTVFVQSWATMKGTLHARET >gi|238617817|gb|GG669604.1| GENE 442 456295 - 457179 652 294 aa, chain - ## HITS:1 COG:SA2374 KEGG:ns NR:ns ## COG: SA2374 COG3001 # Protein_GI_number: 15928167 # Func_class: G Carbohydrate transport and metabolism # Function: Fructosamine-3-kinase # Organism: Staphylococcus aureus N315 # 10 284 1 275 288 224 39.0 1e-58 MIARQGGIKLNPELFKKLPINHVSNYRAVGGGDINEAYELDDQDGARYFLLIQPNHSKDF FQHEVTGLQLISQTVLTPKVLDWGTFGSDAYLLLSYINHQPAGDQYEMGKQLATLHKRRS PNKQYGFNEDFTMGTYTANNSWRPDWESFFVDQRLEDLKRLIRDRGLWTPEMEVLYARAI KVFKRLMNAYHPIPSLLHGDLWSGNFMFNPDGHPVFIDPAVFYGDREFDLGITHVFGGFN ADFYKGYNDEYPLEKGSDNRIPFYQLYYLMFHLSQFGAGYQGSVLQMLALCAEK >gi|238617817|gb|GG669604.1| GENE 443 457307 - 458680 939 457 aa, chain + ## HITS:1 COG:PM1048_1 KEGG:ns NR:ns ## COG: PM1048_1 COG2918 # Protein_GI_number: 15602913 # Func_class: H Coenzyme transport and metabolism # Function: Gamma-glutamylcysteine synthetase # Organism: Pasteurella multocida # 4 433 2 429 481 165 27.0 1e-40 MFDEIGQIIFNNEIVAKASDFNMGIEVETIRIDSSGRLTKEEYPKALGNQRKNHFIKTDV YQIQSEVITPAARKSLDAMHYLMALNDTLRNALEPNELLWPLSMPPILPRDKKTIPIANV DPDQRAYYERWINTRSDTQGIPVGVHLNVSVNETVLKTVWEAEKDKFDSYPEFVNYMYIK IAQGFVYYRWLITYLFGNSPIAEKNFFKAEDDQPAHAVRSIRSSNYGLTSDIKKDYRSVA DYVHNIESHIEDGTLFSEAEYHASVRLKTVHGDLTKMVKNGVDYIELRMLDLDPTTALSI RTTTIRFFRIMLSYFMMTPPMEESDKVNLKLAQGISMNEVVALESPYQQTIYHHEAQNFL DKLQMFGATIQWGPEYQEVLDTMQDRLDNPNLTPAATLCDHEVDGSLMSYGLAMANRYQN RAHENPHPFTGFEEQPDMTANELRQRLFGVMGKPENL >gi|238617817|gb|GG669604.1| GENE 444 460446 - 461783 945 445 aa, chain + ## HITS:1 COG:PM1048_1 KEGG:ns NR:ns ## COG: PM1048_1 COG2918 # Protein_GI_number: 15602913 # Func_class: H Coenzyme transport and metabolism # Function: Gamma-glutamylcysteine synthetase # Organism: Pasteurella multocida # 19 386 22 394 481 178 32.0 1e-44 MIRIKNATYIASLINSFVGLEVETHRINTDGGLSTHPYPSGLLDEKKHHFIKNDFLETQS ELITPPEENTHRGLTYLGAYHQALRSELASSEYLWPYSMPPKLRSDHADIEIAQTDHDNY VYRQKVAQIRKIERTAETGVHVNIGLTPAAIHQVGIPPTQDEIDNLYLQAAIGFMNYRWL LTYLFGATPFAFDNYFSKTANMPAQAVRSLRNSHFGFGNGFLASYRSVSEYVTDIEDAVR DHEIIAEREYYGTVRLKRTPHLKDLLADGILYTELRIYDLDPFEPMGISEDAVNIIRLMF AYFAGNQPFNLDESDHEISAAVKKNDTVALENPLTVTQFHDQAVSFIEKLSAFSQMISLP FNAEELCLRMLERIDNPLLTPSARLVTWSNNDAQQLFDKLLLMAKGYQNDFLDHPLYGYE DRSLKEQKRKIQQLKMGKQLVLKNN >gi|238617817|gb|GG669604.1| GENE 445 461889 - 462683 688 264 aa, chain - ## HITS:1 COG:lin1909 KEGG:ns NR:ns ## COG: lin1909 COG2071 # Protein_GI_number: 16800975 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Listeria innocua # 19 261 1 244 244 186 40.0 4e-47 MQNYYIKTTIITTQGGIILRPRIALPADTLAEATNIINERNAAFAPRPAIEAIVKSGGVP VIFPSVNPEDVRDYMTLFDGVCFLGGADVDPTFYGEEPFQKLGATYLKRDLFEIELLKQS VTAGKAIMGICRGLQLINVGLGGTLYQDLSQDLHATLKHSQEAPGNMPSHHITVDPTSKL YKLIGARPYVNSRHHQAIKDVAPYLKVTARADDQVIESVESIKSDQILAVQWHPENIFKH YEDSKKLFKDFVERSKKVAEKSRT >gi|238617817|gb|GG669604.1| GENE 446 462761 - 464137 930 458 aa, chain - ## HITS:1 COG:PM1048_1 KEGG:ns NR:ns ## COG: PM1048_1 COG2918 # Protein_GI_number: 15602913 # Func_class: H Coenzyme transport and metabolism # Function: Gamma-glutamylcysteine synthetase # Organism: Pasteurella multocida # 4 446 2 444 481 197 29.0 3e-50 MFSEIGQFIFDNEAVAKTSDFTMGLEIEMQRVDETGELSQEPYPAGAGDEKINPWITNDF LETMSEVVTPPAAHALDAMHYLYGINNALRTALSPGELLWPLSMPPRLPKDKSRIPLAKM GPKKEAYLKEWLKRHGFSEGTPCGAHINLSIDPHVFNLVYDRMHDQFDSELDLQNYLYAK IAQGFLRYRWVITYLFGASPIAEANYFDKGQGPKAPIRSIRQSSHGFGNKFTGDYTNIQQ YVNRIEQGVSDGKLISDYEFHGAVRFKGNTNLKELPKTGVQYLELRMLDLDPSSSVGIRT NTLRFFRLMASYFIMSPALKPDQVNAVVERADKMNEEVSEEHPNDISKYQASARAFLQRL EMYADKIQLGPEYQEEIEDLQDRVENPLSTPSAKMITHIKNNSLTDYALRRAKHYQASAL QSIRPFKGFETNRKISANDLKHELFQGSWEPDKDKGQR >gi|238617817|gb|GG669604.1| GENE 447 464403 - 464981 478 192 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508292|ref|ZP_03938341.1| ## NR: gi|227508292|ref|ZP_03938341.1| possible replication protein B [Lactobacillus brevis subsp. gravesensis ATCC 27305] possible replication protein B [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 192 15 206 206 260 100.0 4e-68 MKQIADELSVNKMRVYRTISRLGLTEAFKKGQTLYFDQEAKNAVESAIRQTEPANAQTAS QPRQTNRSATENDLLESLNDRVKAQQTQIETLTRLLDQSQRLQLVAEQRTQKVERQVTEL QQQISTPSAVATLTRAPQSNERGQLDPDYFDKDQAEKQQVDNQGQSSKVKIIQKPEKEDG NFFKHFWQKPML >gi|238617817|gb|GG669604.1| GENE 448 465289 - 467046 239 585 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 343 560 137 353 398 96 31 3e-18 MSIFVKLSWYFKQEWKTYMVGVCGLILTALLAIIPPRIIGVLVDAIHSGKLAANNLMILL IVLAVVAIAQYGSRYMWRTAIWGEAAKLEKVLRNRLFWHYTQMDQAFFQKYRTGDLMAHA TNDLSAIQRVAGGGILQFADSMITGGTTLIAMVSLIDWRLTIIAIVPFPLLAVMARYMGS KIHIAFRDSQAAFSRLNNKAEESITGIKVIKGLGQQKEDMADFDNQVAQTININRRVNRL DSLFDPMTTMIISLSYVITIVYGGYLVTTGQITIGSLVSFVSYLAMMIWPMFAVGMLFNT LERGNASYDRVMDLLKQQSKVIDDPDGANQSPKGEIKYDVQQFAYPGDDRLALQQINFEV PAGKTVGLVGKVGSGKSTILRLILRQFDNYKGSIKFGGIDIRHYKMDALIPAIGYVPQDT FLFSDSIRENIRFARPQASQKQVELAAQKSDLFDQIKGMPDGYDTAVGEEGISLSGGQRQ RLAIARALLINPELLILDDALSAVDAETETQILDNLRSERKEKTTIISAHRLSSVMNADE ILVINDGRIAERGTHDELMTLGGWYHDMFERQELETKVKGGQNNG >gi|238617817|gb|GG669604.1| GENE 449 467039 - 468832 236 597 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 358 581 132 355 398 95 31 6e-18 MASSKRQSAWSESIPVKEQIHIIGRLFHYAAPYKWYFYFSVFFAIAVSVVNILLPRIIQT FMDSHLVVGHPDFKVMWFFAGLYFFGMIMKAIMQFAQTYLYEMGAEYMLENTRRQLFSKL HRLGMRYFDQTPSGSILSRLTNDTMAFSNFWALFSSLVVTISAMISSFIAMLLADTTIAL WLLIFMPFLAVTVWYYQRYSTRVYRRMRERLSLLNAKLAEGITGISVIQQFRQEKRVNHE FNDTNDQYFNTRRAMIRINSLLLNPIINLFYALGSVLVLGMFGVRGLHGYVAAGVIYAFV TYLDNFYNPMSNMMDRLSDFQDGVVAGSRVLRIMDDQTMEPQQHSVEGATIAQGKIEFRH VTFAYDGQNPVLHDISFVAEPGQTIALVGETGSGKTSIINILMRFYEFGSGEILIDDRDI RDYTIKELREKMGLVLQEPFMFYGTVSSNIRMFNEHITDEEVRKAAHFVQADQFIEALPD QYEARVIERGASYSSGQRQLISFARTLVTDPKILILDEATANIDTETEQVIQKGLAKLQE GRTTIAIAHRLSTIQNADLILVLEKGRIVERGTNDELLKKRGYYYDMIKLQNSAHLD >gi|238617817|gb|GG669604.1| GENE 450 468902 - 469336 519 144 aa, chain - ## HITS:1 COG:CAC3714 KEGG:ns NR:ns ## COG: CAC3714 COG0071 # Protein_GI_number: 15896945 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Clostridium acetobutylicum # 3 144 12 151 151 73 35.0 1e-13 MANEMMNRFAVDPFFDRLARRFFSPTEWENDSVNMGALKTDIKETDQDYMVKVDVPGIDK KNIHLAYNDGDLALNIDQTHASEKKDEQGRVIASERSHGVMSRTYELPSVDRDHISAQVE NGVLNIVLPKAAKSNDKNSQIEIQ >gi|238617817|gb|GG669604.1| GENE 451 469457 - 469891 451 144 aa, chain - ## HITS:1 COG:CAC3714 KEGG:ns NR:ns ## COG: CAC3714 COG0071 # Protein_GI_number: 15896945 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Clostridium acetobutylicum # 3 144 12 151 151 79 41.0 2e-15 MANDLMNRFDVDPFFDRMARHFFSPSNYDNDYANFGNLKTDIKETDKDYTLKIDVPGVDK QDIHLAYQNDTLSLNINQDHSSEQKDENGRVIASERSHGVMSRSYTLPGVDRDHIAASVD DGVLNVTLPKVTESHDQDGHIEIN >gi|238617817|gb|GG669604.1| GENE 452 470218 - 470742 340 174 aa, chain + ## HITS:1 COG:BH3394 KEGG:ns NR:ns ## COG: BH3394 COG1309 # Protein_GI_number: 15615956 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 1 134 19 148 186 68 30.0 5e-12 MMTTPVDKITIDMLTQKADLTRNTFYYHFEDIYSLLEWVYKQDLLSNINAYTKIEDWKVA YRLILNYIEDNKTFCMNTFHSVARDLLENFLYSVASDLVGKVIIHSDRNVSKKLTESIQD FYGWALVMQVVQWLSNDLKESKADVIQRASIMLTGGIDNAIRNGQRVKGFGQMS >gi|238617817|gb|GG669604.1| GENE 453 471022 - 472716 1389 564 aa, chain + ## HITS:1 COG:lin0483 KEGG:ns NR:ns ## COG: lin0483 COG4716 # Protein_GI_number: 16799558 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Listeria innocua # 9 563 54 565 566 412 43.0 1e-115 MTKNKAIMIGAGLANMAAAVYLIQEGHWNGNQITFYSLDDHGSNDGSAANDAADEYWNKN HPLENTKGFVARGGRMLNYRTYVDLMDLLSRVPSATEPGMTAAEDTRDFDAHHRTFDKAR LMEGGKGILNAGKLGLNNKDRLKLTELILMPDSKEEKLDNVTIADYFQDDPHMFETHFWY MWETTFAFRTQSSAQELRRYMHMMIYEFTQIEHLVGVNRTRYNQFESMMLPLINYLKDQS VNIILNRRVTDFDFKDTPMQDEITVTGLTMTNTETNEEEHVDVDDDTAVIFTNGSITDSA TLGDYNTPAAENMDYGAAASLWKKATARFYNLGNPDKFFNDRNASEWSSFTLTTSNHVLL NEITRITTQVPGNALNSFLSTSPITSLGHKDVNMSIVVHHQPHFTTQKPNESVIWGYFLY PRRRGEFVQKEYIKMTGKEMAEELIGQLSKVDPGPGNIMDKKQEILDSIINCIPVYMPYA SALFNNRAKSDRPKVIPQHSTNLAFTGEFVEQPYQMVFTEQSAVRSGEIAAYHFAGVPMA KLVKNKRYDRDPKTLAKATKKMFE >gi|238617817|gb|GG669604.1| GENE 454 472962 - 474605 1349 547 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508300|ref|ZP_03938349.1| ## NR: gi|227508300|ref|ZP_03938349.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 547 1 547 547 494 100.0 1e-138 MTHFDKQFKRLFLAIAALILFIPLFGSSVANSLFSDGQGMASAAKKSDKFDVNKVVKATV VYSKHVPILKVTVKPTITNAFAKKDQLKFEFDKKNVDLKNMQASVEKNLPFKHTTKKDTA LLLTFEKDVKSGTYKQAYAIPTKKLSKITKIKATYNGQKIKITNNKIKSGKYAQKQADTA SKKDQSDFKNKSTSTTNKSRDSQSADNNSSNHTTGARENSYPVKAGAVSDTQSTVAPQAS GQYSNDRSATSTSQEAYGHTTTISHYGDATANTSNNYASNGSQKTNWTATTSQTNNKDYG RGTGSSSANVTYRPVSYNSGVNRSGNGVSNKNTSRHNDKKAARSNSQKSSKSTVKTKKTE TGKKTTSDKTKASDSKKTTNKDSNDNQKTSNKNNKSDSTVNKAGDSSQKNDDGASNNNAS QSSNTNSNADSNDQTTPTSPTTDNNQTPAVGEDNTNSQESSTVDSSGNTDNTQNGSQTTS DSHSATTTNTNATSTSSDDGSSNQTQASSTTNDQQSTQDQSATQTMTASTTGTATAGSNS VSTAVAA >gi|238617817|gb|GG669604.1| GENE 455 477561 - 478592 800 343 aa, chain - ## HITS:1 COG:CAC3503 KEGG:ns NR:ns ## COG: CAC3503 COG0451 # Protein_GI_number: 15896740 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Clostridium acetobutylicum # 4 321 7 327 342 181 36.0 2e-45 MKTIVVTGGSGFVAGWIIRELLTHDYKVRASLRDTSRAEEIGQGIMLLQPTALSKNLSFF KADLTNDNGWDEGMKGADGVIHVASPLGHGTESVEEMVKVAKGGTLTVLKAAKDNHIKRI IMTSSEAASTPSISVGEKTIDENFWSDIKNPELDAYRISKIEAERAAWQYAKDNQLQLTT ILPGAVFGPILSPDRLSSDEILLKLLNGERMIPKVPMEISDVRDLATLHRLALEKDVAIG HRFLAADQKLTMAEIAQIYQKQYPRLQLKFTYLPNWVTVLASKFSPSLRPLVPMLKRKYS HTTQSAQKLLGWKQRPVQKTITDAADLLIFNKLVKNIPEKTYR >gi|238617817|gb|GG669604.1| GENE 456 478685 - 479341 435 218 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508302|ref|ZP_03938351.1| ## NR: gi|227508302|ref|ZP_03938351.1| TetR family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] TetR family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 218 1 218 218 374 100.0 1e-102 MVDRKIELVDKLNHIMTANGFNTLSMNELAKRANVSRAKLYIYFKNKQEIVTAVVDRHLK FINQQLHEDFKSTVTDYVRIKLNQLLLIGAQSPIFRTELKQYFPELSIKLEQAYHTFKSS FLSVMVKLQNENIIIQQIDFENLFIQDELMIHAALSHAIDNKFNLEKAQKLLGNYLEIEI RGTVNDQSLVANAFLSNQELLKIIWQELNDTYFSVISY >gi|238617817|gb|GG669604.1| GENE 457 479400 - 480104 670 234 aa, chain - ## HITS:1 COG:L104065 KEGG:ns NR:ns ## COG: L104065 COG1814 # Protein_GI_number: 15673456 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Lactococcus lactis # 9 232 2 225 226 243 54.0 3e-64 MSIRSKKKEKPSQTMDEKLNSLRAGVLGSNDGILTVVGVLFSVAVATTNQFTIFIAGLSD LLACAFSMASGEYASVSTQKDTEQSVVRKEKELLKTNYKQQLQTVSDYYVDQGVTKQTAD KIADDLMKKKPLETIVNIKYDLQLGHYMNPWDAAFSSLFSAAAGGIFPLVAMTVTPVAYQ WQATILAVCFSVALTGFMSARLGNGLVKTAMIRNVLVGIITMIIHYSLGMLLQA >gi|238617817|gb|GG669604.1| GENE 458 480140 - 480829 768 229 aa, chain - ## HITS:1 COG:L104745 KEGG:ns NR:ns ## COG: L104745 COG1814 # Protein_GI_number: 15673457 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Lactococcus lactis # 6 226 3 223 229 216 53.0 2e-56 MAQNAKKKTLAQKINVMRAAVMGANDGIVSVAGIVIGVAGATSNNFAIFISGISGMLAGT VSMAMGEFVSVNTQKDSQRNAINQQKNALAKSYDHEYGAVRQKLVSDGISTDLAEQATKE MMTRDPLKTSVRQKYGFNVGEFTNPLSAAIASMISFPTGSILPLVAITMFPKSIRIIATA IAVIIALAITGFTAAKLGNSNTNRGMFRNVVSGILTMTVTYIIGTLIGS >gi|238617817|gb|GG669604.1| GENE 459 481061 - 481828 598 255 aa, chain + ## HITS:1 COG:BS_ywcG KEGG:ns NR:ns ## COG: BS_ywcG COG0778 # Protein_GI_number: 16080862 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Bacillus subtilis # 6 248 2 246 249 172 39.0 8e-43 MSSATNPIIEQLLAHRSIRQFKDKTLTNHQIHELIEAAQHASTSTFSQQYSIISVTDQRI LSEFAEITGHPWLLKSSHYFVMIADQYRNLQIARKANADPFVLHTTDKFLAAVFDASIAT ENVMVAAESMGLGATIMGSILNDSKRVIDLLGLPELTFPLLGIAIGYPADQPELKPRLPQ EEVHFVNQYQLRSDKTQLKQYDQLLSDYYRSRGSNNRVETFSHHIVSELGIGHHVRADLL SNIKSQGFLISQAED >gi|238617817|gb|GG669604.1| GENE 460 482240 - 482899 506 219 aa, chain + ## HITS:1 COG:SP0711 KEGG:ns NR:ns ## COG: SP0711 COG0765 # Protein_GI_number: 15900609 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 27 219 7 199 206 184 49.0 1e-46 MSWAIIQQSLPMFGKGFVLTLWLSFVGIIGSIIVGLICSLFQYFKVPILHQIASVYVEIS RNTPLLIQLFFLYYAFPVIGIKFGAELCGIIGLIFLGGSYMAEGFTGGFNGVSKGQVESG KAIGLSRWQLAKYVVFPQGFSLSVPAMAANIIFLIKETSIFTVIAIPELTNTALDLIGMY YRSNEYLLVLVIGYAIILVPLSIVLTLLEKRVRYGAFGN >gi|238617817|gb|GG669604.1| GENE 461 482925 - 483569 475 214 aa, chain + ## HITS:1 COG:SP0710 KEGG:ns NR:ns ## COG: SP0710 COG0765 # Protein_GI_number: 15900608 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 206 16 221 225 184 45.0 1e-46 MRLLGGLWVTVKIAAVALIAGIILGIALGVLRTFKNRPLRIVLRLYLEFFRVVPTVVLLF LFYYILPKQMNFNLPADQLATLVFALWVGAEMSDIVRGALISVPKHQIESGKAIGLSRFQ LYWYVLIPQSINLEIPATINLATRVIKTTSILLLISVMDVINIGQQIIEANNHTYPTGVF WVYGLIFLFYFLIDYPLSWWAKRLEKKRLERENG >gi|238617817|gb|GG669604.1| GENE 462 483562 - 484302 470 246 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 5 244 1 242 245 185 40 4e-45 MAEKVLQVEHLEKSYQKKHVLHDINFSVAQGEVVTLLGPSGSGKSTLIRCLNGLEIYQKG TITFEGQKIIPTEKNWQQIRQKIGMVFQSYDLFPNLTVMDNILLGPTKVQKKDKVTARSE ALSLLKSVELDDYANAYPRELSGGQKQRVAIVRALALHPDFMLFDEVTASLDPEMVRGVL TIIENLANRDNMTMIVVTHEMNFAKQIADRVLFLQDGRILEQTPSEQFFTAPQTDRAKAF LDSMDF >gi|238617817|gb|GG669604.1| GENE 463 484333 - 485181 915 282 aa, chain + ## HITS:1 COG:Cj0982c KEGG:ns NR:ns ## COG: Cj0982c COG0834 # Protein_GI_number: 15792309 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Campylobacter jejuni # 1 279 1 274 279 239 46.0 4e-63 MKKHWLTKLIAVVSVLATLLLVLSGCGNSKKSSSNNPSSVSQIKKKGTIRVAVFGDLPPY GWVNKDGKRVGYDVKLAHQVAKDLGVKVKFVQVNANNRVDALNSNKVDLVLANFTVTPER KQVVSFAKPYMKVSVGVVSPKNKPITKVSQLQNKNVIVTKGTTAENYFTSKQPNVKLLKF DSKTQQFNALKNGRGVALADDNSYLYAWSKSNSKYTVGIKSIGPKSYIAPAVKKGNKSLL NWTNKEITKLTKKSFFVSDYNTDLKPYFGKEVKPSDIVLPTK >gi|238617817|gb|GG669604.1| GENE 464 485616 - 486884 1101 422 aa, chain + ## HITS:1 COG:ydiM KEGG:ns NR:ns ## COG: ydiM COG0477 # Protein_GI_number: 16129646 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 14 385 9 382 404 252 41.0 1e-66 MMNTMTKSNKRRLSISLYLNYLVHGIGLIILTQNMQALGNFWKVPIATVSYVISGIGIGK LIAYFLFGYLSDRFGRRQLVLTGTLSYMVFFIGIPFTHNIAIAYVFAIIAGVANSALDSG TYPTFVEMGGSSSASNVFIKAFMSLGEFILPLAIAMLEAKSLWFGWSFIGTLLVLVANLF ILRGAKFPEMNHADEAFIENHENTSKLRKIIATVSLAIYGYTTMAIMILFTQWISMFATN NLGYSSLVSHGLLSLYSIGSISGVIFNFILLKMKVSETKLLVAMNALSLLAIFVVSHSAT VLVTFIAAFAFGFTAAGGVMQVALNVLLKMFPKHKGIITGTYFTFGSIATFTIPIVTGWL SKTNIQLVMNFDVMIELVGTILVVLAAVSLSSGSVLSSIRHMVTGLLHVRTSTISSDQTK DN >gi|238617817|gb|GG669604.1| GENE 465 487097 - 487852 694 251 aa, chain - ## HITS:1 COG:lin0494 KEGG:ns NR:ns ## COG: lin0494 COG0710 # Protein_GI_number: 16799569 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Listeria innocua # 6 244 4 242 252 184 41.0 1e-46 MAGKIVQVKHTTFESGKTNIAVPITGKISTDIISQVKQALNHHPDVIEWRIDYDRDVLDH ENYLDTVDHIQSLIGNTPLLTTFRTAHEGGVSSLEDAEYFSTYRWLLENRLTDMLDIELN RNKATVDFLINLAHHQNIPVILSNHDFQSTPDETEIISKLKRMQERNADIGKIAVMPHTS KDVLTLLNATEKANRELEIPIITMSMGNLGKVSRVTGPLFGSTLSFATVAEASAPGQLTV EAVRKGMATLN >gi|238617817|gb|GG669604.1| GENE 466 488022 - 488834 733 270 aa, chain + ## HITS:1 COG:SP1391 KEGG:ns NR:ns ## COG: SP1391 COG4377 # Protein_GI_number: 15901245 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 18 249 5 236 250 135 35.0 1e-31 MGKLATSVSISGGMIGFMLLTGIVMFLIPIGTYWGLKRHYKLVSTPVWVGIAVFIVAVMI LERILHMIILQPSADGSIALATHHPYMYVAYGALVAGIFEETGRFFGFRYLKKRVSGFGT AIAYGIGHGGIEMILIGTMGMVNLVVMSVAINSRNAAVLSKLPSGTIHSLISHAGAATTS SFFERIAAFIIQILLSIIVWASVNYVGKIWLYPLAIGLHALIDTPAAMFQAGIISNELTV EIVLWISVLAMGVFVYLYIGKLRKSRVTTS >gi|238617817|gb|GG669604.1| GENE 467 488943 - 489995 793 350 aa, chain - ## HITS:1 COG:lin0436 KEGG:ns NR:ns ## COG: lin0436 COG0726 # Protein_GI_number: 16799513 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Listeria innocua # 44 348 156 463 466 199 36.0 5e-51 MIRKYSLVRRLGVAALFGFTLAAIANQPVFAASTPTKATKTTSTTKRLTYGDITNNSTKR LGTIRQLTRTTLAETHKLTGKQVQQLVYLPLPKRLTAKNFTLDNEHLTIHLTKNNYGVKN VAIPLSKLTGIILNRYMPAKYDFVKPKTAKKVVALTFDDGPDPTLTPRLLKTLKKYKVPA TFFEVGSSVIKYPNISRLVLKYGDQIGNHSWSHPQLTDLTNAKALRQISLTDAAIYKATG TIPYYIRPPYGAVNSRIGNLYDRPIVRWSVDSRDWSYLNTAKTVDHVLSTTTNGSIILMH DIHATSVAAVPQIIRSLKKRGYTFVTLEQLNEKPLLANLQYFGRNDFRGF >gi|238617817|gb|GG669604.1| GENE 468 490554 - 491819 1099 421 aa, chain + ## HITS:1 COG:BH2935 KEGG:ns NR:ns ## COG: BH2935 COG1228 # Protein_GI_number: 15615497 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Imidazolonepropionase and related amidohydrolases # Organism: Bacillus halodurans # 58 404 53 393 394 191 34.0 2e-48 MTTTNYVNAAIYNHNQQKFIFNQHMIVDENTGKIIEAGNGRTTRQVCDDVVDLNGRFVMP GIMNAHTHITDMPTYWWHNGEEKRHPDSREVCTMFAIRNMQDALSHGITYMRNVGAEFDI DVEIKKMQEKGWIKGPKIMTSGRAFSITGGHDSESTYEVDGIDEVRKGVRQALKNGVDNI KMMVTGGVLKNGETPDDIQFTLEEARTAVSEAHHKGKTAAAHAQGNAGIKEAVAAGFDTI EHAFDIDDEAITMMKEHGTIIVPTMNAMFAIYKYGRGVVPDWAREKVILNIKKHFMSIAK AAKAGIPIAMGTDAGTPFNGFQNESAYEMQLYVEKAAMTPAQAIDAATINCAKAMHIDQE YGQIAAGNYADFLVMNENPIDDISVVGHDKDVYQNGKRVHAQEVVNELKATQKIKKISAA I >gi|238617817|gb|GG669604.1| GENE 469 492166 - 492480 244 104 aa, chain + ## HITS:1 COG:no KEGG:lp_2038 NR:ns ## KEGG: lp_2038 # Name: not_defined # Def: transport protein # Organism: L.plantarum # Pathway: not_defined # 15 97 389 471 484 75 42.0 6e-13 MLTKTDPAWNSSKELTEARKQINQLDESIVALLAKRFETAARIGSIKEKQGLPVFDPTRE EAVLERVTSFDPNRDTRQYLWNIYRSIMENTRQFEHDSKEKPKK >gi|238617817|gb|GG669604.1| GENE 470 492493 - 493662 987 389 aa, chain + ## HITS:1 COG:SPy0810 KEGG:ns NR:ns ## COG: SPy0810 COG0082 # Protein_GI_number: 15674852 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Streptococcus pyogenes M1 GAS # 2 389 1 388 388 401 51.0 1e-111 MLNYLTAGESHGPQLTGIIEGVPSGLRLDIDEINEQLKKRQGGYGRGNRQKIEHDQVTVV GGVRHGITLGSPIALVVNNRDHAHWNEIMNPTSPETSENTLRKVERPRPGHADLVGGMKY RHHDLRNVLERSSARETAIRVAVGSVCKQLLKQAGIQITGYVEQIGPISTDDKPELNVSK IESEINHNDLRIIDQSKVEQIHELIDKTRKDGDTLGGIIRVVATNVPAGLGSYISWDTKL DGKLAAAVMGVNAMKGVEIGDGFKAATSYGSQVMDEIDWSKEDGFSRETDHLGGFEGGMT NGMPIIVKAAMKPIPTLYKPLQSVDINTKEIKKANVERSDTTAIVPASIVIESVVAIELA KALTDKFDGDNVQRMQEQIAAYRNELKNF >gi|238617817|gb|GG669604.1| GENE 471 493674 - 494978 1165 434 aa, chain + ## HITS:1 COG:lin2037 KEGG:ns NR:ns ## COG: lin2037 COG0128 # Protein_GI_number: 16801103 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Listeria innocua # 9 427 7 426 428 383 49.0 1e-106 MKELSDKLKTGLHGELSVPGDKSISHRGIMFGAVSEGRTTLHHFLTAEDCLSTLKAFQQL GVSIKRDGETVVIEGVGLHGLKQSGKPLDMGNSGTTTRLIMGLLAGQNFDSTLFGDDSLS KRPMKRVSEPLAEMGADICVTDGHLPARIHGQKLHAIDYQLKVASAQVKSALILAAIQAD QPSTLIEKLPTRNHTEKMLNAFGANIQTMADNVTIKVNPQPKLTGIDLTVPGDMSSAAFF LVAATLVPNSKLTLKNVGVNETRTGLLSILKRMGGKVIERHRNDSGEPTADLVVSSAELK PIEIGAEEIPAVIDELPLVALLAAKANGISKITGAGELRVKETDRIAAVVQEFSKLGIAI RELPDGFVIDGAKPWRVEKTKLDSHGDHRIGMTLAIASLLLDEQLQLNGAESVNISYPEF FDDLASVTNIESYS >gi|238617817|gb|GG669604.1| GENE 472 494996 - 495853 669 285 aa, chain + ## HITS:1 COG:SP1373 KEGG:ns NR:ns ## COG: SP1373 COG0287 # Protein_GI_number: 15901227 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 3 285 4 289 367 198 40.0 1e-50 MTTVLISGLGLIGSSIARVIKQENSEIEIIGSDPDDESAQFLLDHHLIDDRQVFTNAVPL ADFIILAGPVSVIIRQINELITLPLKPDVFVTDVGSTKEAIMDAAKPLISEGVNFVGGHP MAGSDKSGSRSGRLDLFDQAVYFVVGGTTANPKLVQFQNLLSAAHLRWQVISASLHDQLV SEISHVPHVIAVTLVNTIADDLSRNPDALKAAAGGFRDTTRIAASDPTMWTAIMMSNAEL INHELSKFQQHLSQFQTALEARDEEEIKNIFKNAQSVRKSLDERK >gi|238617817|gb|GG669604.1| GENE 473 495860 - 496366 464 168 aa, chain + ## HITS:1 COG:lin1861 KEGG:ns NR:ns ## COG: lin1861 COG0703 # Protein_GI_number: 16800927 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Listeria innocua # 9 164 1 155 157 102 35.0 4e-22 MKAILVGFMGSGKTTVGRLLANQIQVPYHDLDDVIVHNAGKSIQQIFDDQGEDTFRMLEH DALMNSLGDEGILGTGGGTPIQPANFELLLQTTVPVVLLDVLPETIWARLRGDSGRPLAK KLGLAGLIDLKHERDDKYNQVSDIRIATDSLTPEQVVEKIMQELSVLK >gi|238617817|gb|GG669604.1| GENE 474 496396 - 497268 636 290 aa, chain + ## HITS:1 COG:L0061 KEGG:ns NR:ns ## COG: L0061 COG0169 # Protein_GI_number: 15673739 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Lactococcus lactis # 2 283 3 285 286 203 41.0 3e-52 MIDGHTKLYGLLAHPAAHSLSPLIHNTSFKVTGINGVYLAFDVMPNELQTSVDAIRTMAI GGVNLSMPLKTTVIPLLDEITSRAERLNAVNTVINRDGKLVGDTTDGQGFIDALKYQNVS VEDKTLTVLGAGGAGRSIIAAAVEAGAAKINVFKRQNQTFKSRKEQLESWSSVISVIPYE DDDAMQESVASSQIVSNSTNIGMSQDNHLPISQAVLARLTPHHVVTDAIYFPLETPFVKA AKDRGCQTFNGIGMLVHQAAGSFFEWTGQKMPVNDVISAVNQEIVKREHD >gi|238617817|gb|GG669604.1| GENE 475 497505 - 498017 567 170 aa, chain + ## HITS:1 COG:SA1136 KEGG:ns NR:ns ## COG: SA1136 COG4732 # Protein_GI_number: 15926877 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 8 160 5 157 163 105 39.0 3e-23 MNRSATYKMILTALLSALGVVGGSMFEFTIGVAKVAPMQHLINLISGVLVGPWWAITQAF ITSLIRNILGTGTVLAFPGSMIGAFCVGWLFQKTRNLFVAACGELVGTGIIGAIVAYPVA KWLMGANGALWLFVPSFFLSALVGVMIGYVILLSMWKQIISPQLKKLDKK >gi|238617817|gb|GG669604.1| GENE 476 498122 - 499486 979 454 aa, chain - ## HITS:1 COG:STM3792 KEGG:ns NR:ns ## COG: STM3792 COG0738 # Protein_GI_number: 16767076 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose permease # Organism: Salmonella typhimurium LT2 # 14 442 8 427 438 425 54.0 1e-119 MELTSAKKTHSWTQLSDGYLSKTPIFQFLLVSMIFPLWGAAASLNDILITQFKTVFMLND AATAFVQSAFYGGYFLIAIPASLIIKKQSYKFAIMTGLIFYILGCALFFPASRVATYSMF LVAIFAIAIGLSFLETSCDTYSSMLGPKKYATMRLNFSQTLVPLGDIAGILLGKYLIFGS VGNLSEKMSTMHGAARIAYGEQMLQLTLRPYKYILAVLIIMLIIFALSPMPRAKATAEPA EEGMEAQEEKPSLAETIKYLWGNARFKKGVLTQFIYAGLQTTVWSFTIRLALNLNDKISD SAASTFMIYSYIAWFVGKLIANIFMSKFSITGVLTTYSLLGTLSLIITFTVPNMTAVYAA IMTSFFFGPEWPTIYTHTLDAVTEKKYTETAGAIIVMSLIGGAIIPAIQGLVSDFSGSMQ LSFIVPAICYLLITGYFYFEYRFEKKHPDEVAEH >gi|238617817|gb|GG669604.1| GENE 477 499540 - 499935 370 131 aa, chain - ## HITS:1 COG:L85737 KEGG:ns NR:ns ## COG: L85737 COG1869 # Protein_GI_number: 15673620 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type ribose transport system, auxiliary component # Organism: Lactococcus lactis # 1 131 1 132 132 122 52.0 2e-28 MKKTDVINSELSTVIANMGHMDWLSIGDAGMPVPMGTKKIDLALSKDLPSFQQVLKNILT ELEVQKIYLAEEIKTQNPEQLSEIKNTLPNVAIEYVPHTQLKKDLARTHAFVRTGEMTPF SNIILESGVTF >gi|238617817|gb|GG669604.1| GENE 478 500116 - 501135 893 339 aa, chain - ## HITS:1 COG:BH2227 KEGG:ns NR:ns ## COG: BH2227 COG1609 # Protein_GI_number: 15614790 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 334 1 333 347 123 29.0 5e-28 MATIKDISKAAGVSAGTVSRALSSDKSKFVAKSTKQKIKAIADSLGYEYDSDSKDSKKTL EFTLLTTMSLEEETHDEYWRFVRRGMYEAAERENIDLNNVIRIQDGFDPQKLIKSDAVII IGTVTEDAVKKIKHYNSNVVIVDGGGYYHGLVDIVDTNLSELTIDALDQLNAHTKGDIAF IGCARNQVALDGRIVGKVPDARTKAYKKWTSLHQKPEIYKEIEPDTGSAMAVAEGLISEH GQRLSAILVWSDPFAIGVMRALSKYHLMPGKDLAVMSFDDLEFSSFLTPSLSSIWIPKTE LGFQAILHAKSLTNLKRNWTVRNIIPGKIKYRETFNPYK >gi|238617817|gb|GG669604.1| GENE 479 501492 - 503450 1498 652 aa, chain + ## HITS:1 COG:STM4299 KEGG:ns NR:ns ## COG: STM4299 COG2211 # Protein_GI_number: 16767549 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 13 472 5 454 476 151 25.0 5e-36 MASNTGETTGRKITSRLSYSFGAFGHDMFYATLSTYFMIFITSHLFDKNSSASNDKMIFF ITFIIGSLRFVELLIDPFIGNAIDNTNTKWGHFKPWILAGGTIGSIALAILFSNMFGLNV SNPVLYLVIFAFLYITMDIFYSFKDVGFWSMIPAISFDSAERERTATFARVGSNIGANIV GVIVMPLVVFFSINKNHGQGDLRGWFMFAATIALISWLSAVVVALGTKENDSLLRKNTEK TRLRDVFKVLARNDQLMWLSLTYGLYTAGIQITNACQLYYFTYIMGKPGQYSWLMGLNMV VGIVAVLLFPPLAQKFSRRNVFFYCIGLMLLAMLIFAFAGSSLILVLIAAVMFYIPQPLI FLVVLMIISDSVEYGQLKFGHRDESLTLAVRPLLDKLGGAVSNWVVGAAAVLAGMTAGAT AGSITNQGHLVFKLFMFGVPALLMLTGTFIFFKKITLDEKEHAKIVDELEKTWHEHLETN GEESMQDIEKKVAATTTSYQSPITGTLISLSDVSDENFASGNMGKGFAVKPTDGKVFAPF DGVVEATFPTRHAIGLRSDDGILTLIHIGIGTVKMEGTGFVQYVDKGQRVKQGQELIEFW QPAIKKAGYDDTVMVVITNYKDIKAFNYIKDTGDVTHGEEILNLSNPNEKKD >gi|238617817|gb|GG669604.1| GENE 480 503747 - 503932 183 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIKFFLKLVIGILLVFSTTQLTFSSRLAMFLTVAIINIVALILLSSAIADVIKSYIKKKK L >gi|238617817|gb|GG669604.1| GENE 481 504176 - 505627 1110 483 aa, chain + ## HITS:1 COG:L35134 KEGG:ns NR:ns ## COG: L35134 COG0477 # Protein_GI_number: 15672220 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 466 19 486 486 253 32.0 8e-67 MGGLDNTIINTALPAIISDLHGIELIGWIVAVFLLGTAVSTPLWSKLGEHIGNKKSYQLA ASFFVIGSFLQGMSPNIIFLICARTLMGIGNGGMISLPYIIYARMYSNPRKRMQVLGFVS ASYSMATIIGPLVGGYIVDTFSWHWVFYLNVPIGLISIFFVQMYYRMEEQKHQTSPVDYA GAALMTVGLVALLTGIEFIGTVNWLIVAGLIGFAVIVLIIMFRNEDRVTDPIIPSRLFRN RPLMIDFALFTLIWGAFIGFLIYSPMWAQGLLGTSALIGGATQIPGSVTDFLGSGTVAPM RRFLTPQRVVAVGILTLIISFALLVFAGVKTPYWILLIAGAFEGFGNGACFNELQIKVQQ DADMQDVPIATSFSFLIRMLSQTFTASIFGIILNHALKNGVIQSGGRITMQMMNKLSDAT NIGGLPQNLIPQMRAILFNGLHNIMVLSLGLMLISLAINVWAQKLEHEKYQLKNSEAAQT TEN >gi|238617817|gb|GG669604.1| GENE 482 505708 - 507558 1574 616 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0252 NR:ns ## KEGG: Lbuc_0252 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 615 1 614 614 1043 82.0 0 MLSYFALITLVEISGLIIPYIWLMIIANRRGRIWSTIAVIILFVVSYINTYFSLPDLAYP SLIDGWLMWLIGGLIVVAVLKRFVFGGDTTPARSGQSSDGIIGQTISRFTGAFGWLGKLA VGIVLAVIVFIILGSVTQLVTKMNPRPAVESIKTDINDDTKNAPMPVIKNSSETPVVNAP QTVSTDMNNSLNSFKNSNVYDLNHMRVQMYRKKMVYVAPVEFSGGFWRYIHYLKVPGYFR TDATDKNADPKFVSRPMKYTPSAYFNSDADRRISAHSLGYSMVGSTSQLEIDDKGTPYYV RTLAKPISYLNRNYDYKHYKVAVLNTITGKVNVYSPNNVPKFVDIAVSPELVSQEVNLFG RYRRGFWNATSFGGHSGVMQPTKAGTEGGDHLTPYAYKGRVYYFTGMTSVNAHQSSILGY AFVDARTNTLHYYREHGNVMTPERAISYAQQDINPQNYRGTLPLLYRINGDPTWVVSMLD RDNNSFMKFVYLLADGNNQSGTYAIGDDAQSTLALFNQRLEAKTGVTVAQPSGKTISGTI NRIVRTTDNKLMFILKDNNQVYQLDTSAKGFKPIYEFISEGDKVSFKAESGSNDGLSTAN VSLSTFKDQSLDTTKK >gi|238617817|gb|GG669604.1| GENE 483 507730 - 507945 92 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508330|ref|ZP_03938379.1| ## NR: gi|227508330|ref|ZP_03938379.1| hypothetical protein HMPREF0496_0493 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0493 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 71 1 71 71 127 100.0 3e-28 MIEFVDNPHSLVRQYTKFDAFTNDFYMSIDLRDNFVKCISKSIHQGLSIIEIIDTLTLVA AHFSNVSFLTG >gi|238617817|gb|GG669604.1| GENE 484 508419 - 509507 1113 362 aa, chain + ## HITS:1 COG:lin2249 KEGG:ns NR:ns ## COG: lin2249 COG3641 # Protein_GI_number: 16801313 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Listeria innocua # 16 361 7 337 338 157 36.0 2e-38 MDSSVDKPANKLTVKDYVYLVSAGVSNAVLVMLGIGLLTQSIANFVHWPQLHQVGAIAQW LLAPAFGAAVASQLKTNTLVLFSSMISATVGANAVYFIANGVHAATATGNQMFQAAQTGI FTTGQPISAVAAGLVAALVGKYLTGKTPLDMMLVPLAATLVGSIVGLGLASVTTPALNWL SAFIAESMKVNPLLGSMCVSLAWSIFLMTPASSAALAVAVMLDPLSAGAALIGTTAQFVG FTVISWRQNDIGTNIAQGVITPKVQFPNLLANPRLALPSMIAAVVAAPIATLFFGFKVPF TLGGLGLNSLIAPITLASTSMPMLVAYLVMGVVVPAIISIVIYRVLLGLKWVKDEQLHLE IV >gi|238617817|gb|GG669604.1| GENE 485 509579 - 509935 502 118 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0267 NR:ns ## KEGG: Lbuc_0267 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 115 1 115 116 174 74.0 7e-43 MLDVKKSLDRLTWNTQHHYAHIEAQHDFIRAWAVQFEMGYTDFRVVQISLQLDGGQHELL ARFAAAYEKVYDYEYAFAAGGLEGFNQQYGDKIADYKQAADDLLKIIDEIRAINGTVK >gi|238617817|gb|GG669604.1| GENE 486 510279 - 511052 937 257 aa, chain + ## HITS:1 COG:Cgl2619 KEGG:ns NR:ns ## COG: Cgl2619 COG1028 # Protein_GI_number: 19553869 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Corynebacterium glutamicum # 4 256 3 257 258 209 50.0 3e-54 MSKKVALVTGAGQGIGEGIARQLADDGFAVALSGRHLDKVQRVADDIEKNGGQAYAIEAD VQYRDQVFDSVKKTVEHFDHLDVFVNNAGIAHVAQICNTKEEDLDKLLDINVKGTFFGIQ AAAAQFRKQETPGKIINASSIAGHEGFELLGAYSATKFAIRGLTQAAAKELARYKITVNA YCPGIVLTPMWDQIDEEMGQVNHVAKGESLKQYLSGIALGRGEEPEDVANLVSFLASDKA NYITGQAIMVDGGIKYV >gi|238617817|gb|GG669604.1| GENE 487 510958 - 511143 83 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLPILFRSWQVIKPITLLVKQLWLTAALNTYNKDHFTVGMGLRQKYCLSNPFFMVTLMFA V >gi|238617817|gb|GG669604.1| GENE 488 511191 - 511784 491 197 aa, chain + ## HITS:1 COG:AF0170 KEGG:ns NR:ns ## COG: AF0170 COG2461 # Protein_GI_number: 11497787 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Archaeoglobus fulgidus # 8 135 299 424 434 92 36.0 4e-19 MAEVNPFIKDAVVQFQTGALSLKQIEAIFNVLPFDIDFIDVNDRFKWFSNKPNREHARST SQLQDTLQQLHPGTAAARAQAVIDSFKRGEKQHVEIPLNVDGKLIDINYYAVRDNKGEYL GTIEYTGTINHLKELIDQGAWKQDVTTGASKDGETDSSGKGDAVSGASRNEKAHSEKKSD ATTGPSRLSMKDDRWIP >gi|238617817|gb|GG669604.1| GENE 489 511883 - 514948 2628 1021 aa, chain - ## HITS:1 COG:SP1275 KEGG:ns NR:ns ## COG: SP1275 COG0458 # Protein_GI_number: 15901135 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Streptococcus pneumoniae TIGR4 # 1 1016 1 1046 1058 1135 57.0 0 MPKREDIKKVLIIGSGPIVIGQAAEFDYAGSQACLSLREEGYSVILVNSNPATIMTDNEI ADKVYLDPLTVPSLKKILEKEHPDAILPTLGGQTGLNLAVELAKDGILDKLGIELLGTSL HTINQAEDREQFKDLMKELHQPIPDSKTVYNLEDGLDFAHEIDYPVIIRPAYTLGGTGGG IAHNDDEMKTILNRGLTMSPSTECLVEKSIAGYKEIEFEVMRDHHGSSIIVTGMENFDPV GVHTGDSIVFAPTQTLTDKEYQRLRDASLTIVNALKIEGGCNVQLAQDPTSENYYVIEVN PRVSRSSALASKATGYPIAKIAAKIAVGLNLDEIINPITQTTYAMFEPALDYVVAKIPRF AFDKFTNADRKLGTQMKATGEVMAIGGTIEESLLKAVQSLELDKQAQCDLIPDYTRQMSL GDLIEKIKTPTDYRLFELFAAIGKGATIEQIHRSTKIDLYFLSKLENIIKMQQQLTDGLL SSDMVLKARKMGFNNTMIKAVHHATDHELEKLDKMADQHLVYKMVDTCAAEFESETPYFY STIGTENESQPIGNSILVIGAGPIRIGQGVEFDYATVHCVKAIQAAGKNAIIINNNPETV STDFSISDKLYFEPLDIDSVMNVINLEKPMGVIVEFGGQTAINLTEELTKHGVQILGTSM HGIEETENRHDFEDLLIDQNIAHPQGDTAMNGHEAHAIANKLGYPVLVRPSFVLGGKGMA VVHNGEELDEYLVPALKASAGQPILIDQYIPGTECEVDILSDGKDVFVPGIMEHLEGSGI HSGDSIAMYPPQHLTDEQKEKIVSIATKIGKKVHAVGMMNIQFICANDVYVIEVNPRASR TVPFMSKITKMHLAQLATQLILGKSLAEIGLTPGLYPEPTKVYVKAPVFSFAKLPGAPTA LSPEMKSTGEDIGSGETLQEALHNALFDSYHINTDTVEGTVLISKADADDQELVNKLDHS DFDVQVYEKDMPWPDKLAFALSSQDETDDEKQLVANALSHEIPVFTAQDTVMGIFQPQLI K >gi|238617817|gb|GG669604.1| GENE 490 514948 - 516009 772 353 aa, chain - ## HITS:1 COG:lin1950 KEGG:ns NR:ns ## COG: lin1950 COG0505 # Protein_GI_number: 16801016 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Listeria innocua # 2 348 3 355 363 335 48.0 9e-92 MKKYLTLENGDVFVGEACGDLGAEIEGELVFTTNMTGYQENLTDPSYKNQIITFTYPLIG NYGVSLGTSQSDKVQASAVVVREMTDEVYHYQSVISLDAFLKQQKVPAISGIDTRQLTKI IRQYGTMKASLTNQPVNAKEAEMAHQSAIVKSATRSVTDGKENEHVVVIDFGVKSNIVRS LQRPEIDVTVVTPESTFEDISELHPTGILLSNGPGDPTDYSDFLPVIQKLQEQYPIFGIC LGHQLLALANGATTYKMTFGHRGSNHPVKDLITGDIYMTSQNHGYAVDIDSVKSTPLEVT ALEVNDKTCEGLRYPGRPIFSVQYHPEAAPGPHDAKPLFDKFIDLMHVNGGVH >gi|238617817|gb|GG669604.1| GENE 491 516576 - 517523 867 315 aa, chain + ## HITS:1 COG:SP1277 KEGG:ns NR:ns ## COG: SP1277 COG0540 # Protein_GI_number: 15901137 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Streptococcus pneumoniae TIGR4 # 9 308 7 304 307 348 58.0 6e-96 MMQITKPVSFENVVSMEDLSAEDVMSFIHEAIEFKQGKQVELARPVYAANLFFESSTRTH TSFEMAERKLGLQVLNFDPSNSSLKKGESMGDTVKTFQAIGADVVAIRDKKNEYYKDLIE DPNVHLGIANGGDGSGQHPSQSLLDMMTIYEEFGHFEGLNVAIVGDLTHSRVARSNMEVL TKLGAHVFFGGPKEWYTEDFQKYGEWMPIDDLVSRMDVMMFLRVQHERIAVDKNGSFSAE RYHKVYGLTHAREQRMPEHSIIMHPAPVNRGVEIADELVECDKSRIFRQMENGVFVRMAI MTSMLRYRGLVKSEY >gi|238617817|gb|GG669604.1| GENE 492 517591 - 518862 1121 423 aa, chain + ## HITS:1 COG:SA1044 KEGG:ns NR:ns ## COG: SA1044 COG0044 # Protein_GI_number: 15926784 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Staphylococcus aureus N315 # 3 422 2 421 424 438 52.0 1e-123 MKRVIANGRVLDGSKLVQRDILIEDGLIKAIEPDIKIDDVNEVIDAKNHFVSAGLVDVHV HYRQPGQEDKETIKTGSQAAAHGGFTTVCAMPNLTPAPDSPKHLEDIMALNRKDGVVHIK QYATITTNREDDELVDFSALKQDGAFAFSNDGNGIQKSSTMYEAMQQAAELDMTIVEHVQ DDELSYGGVLNDGAAKRLHVKAMPWVSETAQAARDVVLAQATGVHYHICHASSKHTVALI REAKRAGINVTAEVTPHHLLLSDEDIKEDNSYYKMNPPLRGEDDRQALIEGLLDGTIDMI ATDHAPHTKADKDKSIATAAFGITGSETAFSTLYTAFVKTGRFTLEQLINWMAKKPAAVF KMKAAGNLEIGKPADIAVFDLDEPHVIKESEYLSKGKNSPFTGATVFGDTVMTLVDGKVV YKK >gi|238617817|gb|GG669604.1| GENE 493 518988 - 519557 570 189 aa, chain - ## HITS:1 COG:BS_yqkG KEGG:ns NR:ns ## COG: BS_yqkG COG0494 # Protein_GI_number: 16079418 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Bacillus subtilis # 10 185 7 185 185 87 30.0 1e-17 MFETWHRPGKILKKKTVYSGRVFSVDQLHIQTPDGLEVERDLIKTAPTITILAMTEDEEI LMTSEYRAGVNSDSVSVPAGIVNPGETSEQAAKRELQEETGYVAESVAKMTRITSSEGFM DQFADLMLIKFDPTKRVQKHFDADEFVNSHLVPLKRVLNWIKDGKVNTAQAVIRSQLLHA VSKMKGSVV >gi|238617817|gb|GG669604.1| GENE 494 522266 - 522913 263 215 aa, chain - ## HITS:1 COG:SPy1834 KEGG:ns NR:ns ## COG: SPy1834 COG1396 # Protein_GI_number: 15675661 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 3 102 2 100 195 72 38.0 4e-13 MTELSKKIKQYRKEKNLTQKQLAEKMFVSRKLISNWENGRNFPDFRAMIRLSEIFEIKID DLLKNDNKVIEHFDDQGKQTKKDGNILWVCYNLNFLFLILSYIHMFRPFGFHASIIPLSL IINILVFFSHYSNWDSFKKNRKLVLSIISFTILLLINVFSMVLNFNFQKSLNPNNVIGTF GAAAGEFTLILLITFSMTLAIFFRPAKEKGQHKNK >gi|238617817|gb|GG669604.1| GENE 495 523275 - 523448 125 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508342|ref|ZP_03938391.1| ## NR: gi|227508342|ref|ZP_03938391.1| hypothetical protein HMPREF0496_0505 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0505 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 57 16 72 72 91 100.0 2e-17 MKDNFKNLNSYKKLDVNSLNLIEGGNSVASQVSDIFSRFKRAFSGSFVYKVSGRNQF >gi|238617817|gb|GG669604.1| GENE 496 523465 - 524094 248 209 aa, chain - ## HITS:1 COG:L12334 KEGG:ns NR:ns ## COG: L12334 COG1396 # Protein_GI_number: 15671989 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 8 106 7 107 107 66 40.0 3e-11 MDNLANKIKQYRTTKGLTQAGLAEKLSISRKTVSSWENGRSFPNFSTIIQLSKVFGIKVD DLLKNDNKVIEHFNKQDKQVKRDKTILKVCYYLNIFLLTLSYIHMFKPFGFHNSLIPLSL IGNMIIFFSQYSNWKFFKKREQLNRLIVVFFLFLVLNSTTMIFNVNFQKTLIPGDAIVIL GSSSGEFTLILFITISVTLAVCFRPAIND >gi|238617817|gb|GG669604.1| GENE 497 524362 - 524562 164 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508345|ref|ZP_03938394.1| ## NR: gi|227508345|ref|ZP_03938394.1| hypothetical protein HMPREF0496_0508 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0508 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 66 1 66 66 120 100.0 3e-26 MKEFEKRSDKFGGNYMNKVDKDLLLVTPLELTQISGGAYKSEIIKILKGLINSPIVTHGP VSVGKL >gi|238617817|gb|GG669604.1| GENE 498 524675 - 526840 248 721 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 478 718 270 519 563 100 30 2e-19 MFKKRYYVHQLDETDCGAAALAMILKYYHSDISIAKIRGVAQTDKSGTTALGLINAAEHF KLKTQAIKTDISFFKSNDRKEILVPFIAHINKNHGLLHYVVVLKVRKDDLVIADPDPSIG ITKLTYTEFAKIWTGIAVFMAPGPTYVNIKDNNDSLWQTAKLLLKQKQIIATVVISTFLS TFITIVGALFLQKIVDSYVIDGMTTTLTTAAICLFFAYVFHGIFNYFQGYLSTILGQRLS IDVLLSYILHLFKLPVSFFETRKTGEITSRFSDANNIILTLARTAISTLLNFGTIIVIGI VLMVISMKLFLLSMISVPIYAAIIFSFYKLFEKWNNESMEQNALLSSQMIEDLHGIESIK SLNIENKMYDTIDTRFVKTLKADYAYSIASVTQAALKDVAELVITLAILYFGSLMAIKGQ ISLGQLVAFNSLMGYFLGPVEAIINLQNDLQNAKVANKRLNQVLLAPVEEKQKCPMALRE NDLADQTEFSKVSFEYKYGQSILKNINLKIKRNESVAIVGFSGSGKTTLAKLLVNFYKPI TGKVLINGQDIRFVTQKDLRNYVTYLPQTPFIFSGSVIENIALGLRKTPNMETIIRAAKL AEIHKDIEKLPNGYMTNLSENSGLSGGQMQRIAVARAIISDAPVMIFDESTSNLDLLTEK RILNNLMGIKNKTLIFIAHRLEVARKADRIIVMNDGQIIENGTHKDLINEHGNYYQLLQE A >gi|238617817|gb|GG669604.1| GENE 499 526844 - 527335 370 163 aa, chain + ## HITS:1 COG:no KEGG:LSL_1909 NR:ns ## KEGG: LSL_1909 # Name: abpD # Def: AbpD bacteriocin export accessory protein # Organism: L.salivarius # Pathway: not_defined # 70 163 286 379 384 63 39.0 3e-09 MKNSVLESTEYYYHRYTPVCMLIVLPIFLFLVGLVLLSSYLRMDVTVAGAGVYGQTSQRT TRTEPIKNSVYGLVNEKDISELKNSQEARFTIQGNRKLASAIKGKIVKISGSPQIIHSQT YYGIVVKLNSSNKEINLLKTGMNGKLSVVTGTETYFQYLKDNI >gi|238617817|gb|GG669604.1| GENE 500 527525 - 527671 99 48 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508348|ref|ZP_03938397.1| ## NR: gi|227508348|ref|ZP_03938397.1| hypothetical protein HMPREF0496_0511 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0511 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 48 1 48 48 85 100.0 1e-15 MSRNNLTILSTHKLVSVIGGQTFPIPNKPFGDRYPITIQPIIRNAYSF >gi|238617817|gb|GG669604.1| GENE 501 527749 - 527967 232 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508349|ref|ZP_03938398.1| ## NR: gi|227508349|ref|ZP_03938398.1| hypothetical protein HMPREF0496_0512 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0512 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 72 1 72 72 124 100.0 2e-27 MLRWFTGEKGKEEYIIMNKLSKFSKVTDKDLSRINGGGVWWTVITTIGKVGYSAYKDRND IKSGFNKGFKKP >gi|238617817|gb|GG669604.1| GENE 502 528169 - 528366 204 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508351|ref|ZP_03938400.1| ## NR: gi|227508351|ref|ZP_03938400.1| hypothetical protein HMPREF0496_0514 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0514 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 65 1 65 65 105 100.0 1e-21 MAKVNKKFYLSLDFWVCLIVFVTSVSAAVHVDLDSVNWYVETVFSLLGLAGMVYTLFFKK RSDYK >gi|238617817|gb|GG669604.1| GENE 503 528637 - 528951 322 104 aa, chain - ## HITS:1 COG:ECs5129 KEGG:ns NR:ns ## COG: ECs5129 COG2076 # Protein_GI_number: 15834383 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Escherichia coli O157:H7 # 1 104 51 154 155 94 47.0 7e-20 MNWVTLIIAGLFEVVWAISMKFSHGFTKLDWTLVTIVGMVISFLLLAHATKSLPIGIAYP VWTGIGAVGTVIAGIILFGDKLSMLTWMFVILLLISILGIKMTS >gi|238617817|gb|GG669604.1| GENE 504 529125 - 529574 287 149 aa, chain - ## HITS:1 COG:no KEGG:LAR_1321 NR:ns ## KEGG: LAR_1321 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 1 148 1 148 148 116 43.0 3e-25 MKKVINRIMTGIVVGTFVGMILSLIFSALNGATQYYPSSPAFVSHFNGSLTATAVSVVIW SLIGTIFSLSSMIFSNTDWSIAKMTIIHLLITYFGFLPLAILSGWFPLSSPQIVSFTIIF LVVYFIIYTTMRRIAKREVEAINDQLRKQ >gi|238617817|gb|GG669604.1| GENE 505 529571 - 529996 226 141 aa, chain - ## HITS:1 COG:SA2153 KEGG:ns NR:ns ## COG: SA2153 COG3279 # Protein_GI_number: 15927943 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Staphylococcus aureus N315 # 18 140 23 145 147 70 34.0 1e-12 MKIINDLKPNTVLLGFKKRNEQINQIIAYIENHDQTVIGKENGKNRLLHLSDCFSFFTSQ KSVYVNNVSLSQPIKINDRLYTLQEKLPKQFIRISNTEIINLNYVQEFEISKSGIILIHF RNHYQTSSSRRYLKAIKERIL >gi|238617817|gb|GG669604.1| GENE 506 530190 - 531356 1279 388 aa, chain - ## HITS:1 COG:lin2956 KEGG:ns NR:ns ## COG: lin2956 COG0111 # Protein_GI_number: 16802015 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Listeria innocua # 1 387 1 389 395 350 46.0 2e-96 MYQIKTYNAIAQAGLDQFNDQYQINKTKDADAYLIRSVNLHDESFPKSLKIIARAGAGFN NIPLDRATKNGIAVFNTPGSNANAVKELIISLLVASSRNLFDAAAYSAHNSGADISLRTE HDKTKFKGSELTGKTLAVVGVGHVGSLVANAASALGMNVIGYDPYLSSDAAWHISTTITR ARTLDEALKDADYVTVHVPKNEETTGLIGKEQLAVMKDGVHLFNYSRGGIVDNQAAVEAL DAHHLQTYMTDFGEDILLNRDDVVVTPHIGGSTDEAEVNGATQGARTIMTYLETGNIQNS VNLPNLQVPFQAPYRITLIHKNIPNMVGQIATALANAGINIESMSNAARKDVAYTMIDLD NLKNEEDNKLIDTLSKIDAVFRVRVLKH >gi|238617817|gb|GG669604.1| GENE 507 531369 - 532445 1026 358 aa, chain - ## HITS:1 COG:lin2957 KEGG:ns NR:ns ## COG: lin2957 COG1932 # Protein_GI_number: 16802016 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoserine aminotransferase # Organism: Listeria innocua # 3 354 4 352 363 390 51.0 1e-108 MTVYNFAAGPATLPDPVIKQIQEELPSLQGSGMSILEISHRSQMFDDIINTAKQDIKDLM HVPDNYHILFFQGGGTGQFAAVPMNLATTHKKIALLDSGHWATRAGDEAANLGVDVDVLD STKDKHYQELPHMPHAISSSDYDYLHITTNNTIEGTAYHTLPEHGDVTLVGDLSSNFMAE EYNVTDFGLIFGGVQKNLGPAGVTVVIVRDDLVKHVDHIPSILNYELFIKKNSMFNTPPV FAIYATGLVLKWLKQQGGIAGIEALNQKKSSLLYDFLDNSKLFHNNIKKSDRSLTNIPFK TDDPDLDKQVISAADQAGLKNLKGHRSVGGLRASLYNAMPLEGVQALVDFLHNFEKQH >gi|238617817|gb|GG669604.1| GENE 508 532855 - 533484 539 209 aa, chain + ## HITS:1 COG:aq_1990 KEGG:ns NR:ns ## COG: aq_1990 COG0406 # Protein_GI_number: 15606984 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Aquifex aeolicus # 1 194 1 189 212 85 29.0 8e-17 MTDFYFVRHGQTSANAAGLKQGTINNDMTYLTETGKKQAQTVHKQFDISFADRIVASPLQ RTKDTANILNQSAHLPITYDKRLLEISYGEWDGSKNTELEDKYPDVFDHVLDDVLPSYAS IAHGETFDHVIDRVDQFMSDMVKQYSNQRLIVVTHGFTIKAAVLAALGRPKNPMVVEEPD NLSVTKVTLASETKAYYLRYYNRVVNSKF >gi|238617817|gb|GG669604.1| GENE 509 533841 - 535496 1682 551 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 7 549 6 547 549 325 34.0 1e-88 MRQFKSALLLVVAGALVLTLAACGKSSTKQSSSTKNQTLNLSTTAPLDTIDISKSSGYGQ TGNVFESFYRLGRKGKPTAGLAKSSHVSKDGKTWTFTLRSAKWSNGDKITAQDFVYSWRR TLNPKTKSTYAYLFSGIKNADAVNAGKKSPNLVGISAPDSKTVVIKLNKPIAYFKVLMSY PLFGPQNQKVVDKYGKKYGTKSQYMVYSGPFKIQNWNGTGNKWQFVKNNQYWDKKVVKLQ KINYTVVGSPTTGLELYQQGKLDLTPLSNQQIKNYQNSSQFRQYPYSFVGYLQYNFKDSN RIKREAFNNKNIRLAMSLAIDRSVLTKKVMGNGSNTPKGFVASGLANDPKTGEDFAKQQY VKGTVDYNTKLAKQYWEKGLKQIGQKKLTVSIMGANDSSDDPATSAITQYLKAQYAKVLP GFDLQIRNIPSQNAQQNALKGDFDIYLSGWGGDFNDPITFLQIPQTNTSYNYGKYSNAKY DALIKRAQNQDANNADKRWQDLVQAIRLFNSDQGMTPLYQQVTSYLQRSSLKDVIHNTAG TQWSYKYAYKK >gi|238617817|gb|GG669604.1| GENE 510 535604 - 536515 749 303 aa, chain - ## HITS:1 COG:L187450 KEGG:ns NR:ns ## COG: L187450 COG1575 # Protein_GI_number: 15672164 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Lactococcus lactis # 1 283 1 284 301 234 47.0 2e-61 MSLANFLELVEFKAKSASVFPFIVGLFFSWYFLNSVNAVDATLFFIAMFLFNMFVDIWDN YSDYRHSDQEIYKIGTNIIGREHLSIHLIQTMMATMFGIAAFLGIYLTIQVGLPLLWMGI FCFLIGLLYAGGPIPISSTPFGELASGFTMGVMITLISVYINSYQIFQWNGQLLLEILLA ASPEFVWIANIMFANNICDAHEDEMNKRHTIVHYLGVKNSVAIWNLLNVLAIVLVFAAIY VGVYPPALIAIIIPLPFIIKQMILFTHKQVKRETFVCSVKILINGSLGLCLGFLMYWIYT MVH >gi|238617817|gb|GG669604.1| GENE 511 536621 - 537331 312 236 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 [Kordia algicida OT-1] # 15 232 1 217 221 124 31 9e-27 MTQTNKTPEPKVESLFNRIAPNYDKMNSLISLGNHKRWREIAMQRLDVQPGNFAIDVCCG TGDWTISLAKAVGPSGQVIGLDFSKEMLKIASEKIKAAGVQDRVTLVEGDAMHLPFDDRK FDVATIGFGLRNVPDADQVLREMVRVVRTNGKIACLETSQPTNPAIKMGWNAYFKTVPVM AKFAVNKYREYHYLQRTTKQFVSAEKLAKMFEDAGMHNVTYRTFTMGAAALHLGRA >gi|238617817|gb|GG669604.1| GENE 512 537447 - 537833 394 128 aa, chain + ## HITS:1 COG:PH0854 KEGG:ns NR:ns ## COG: PH0854 COG0251 # Protein_GI_number: 14590714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Pyrococcus horikoshii # 1 127 12 136 137 124 45.0 6e-29 MAKEVATKNAPNAVGPYSQAVQVGNTLYCSGQIGLDPATGKLVSANVVDQTTQALHNLQE VVKTAGFKLDDVVKVTVFMANVADFSEINKIYDQFFGNAKVLPARSAVGIAGLPLGAQVE IEAIASKS >gi|238617817|gb|GG669604.1| GENE 513 537891 - 538535 507 214 aa, chain - ## HITS:1 COG:lin0926 KEGG:ns NR:ns ## COG: lin0926 COG1309 # Protein_GI_number: 16799997 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 16 211 18 216 218 116 32.0 3e-26 MVHSDIQALFAESLNELKLTEKQKAVLNASLKLFSEKGFDRTSTSDIAQLAGVSEGTVYK QFKTKEGILTAIIGPFIQQVMPKAATEFTNEVTHTSYPSFGEFLHAIIKDRMVFALNSMP QLRIILHEVITNQAIATGFSHLFENLIVGPLGQTLKHYQEEKQLVDWPLDRIIRYVATTV MGYVLPAALLHGSVDIEHASREATEFLLKGLKPA >gi|238617817|gb|GG669604.1| GENE 514 538552 - 539763 953 403 aa, chain - ## HITS:1 COG:lin0925 KEGG:ns NR:ns ## COG: lin0925 COG0842 # Protein_GI_number: 16799996 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Listeria innocua # 1 403 1 371 371 257 41.0 3e-68 MRTVKMVKRVLTEMLRDKRTLALMFLAPLLILTLMYFLFQSNTDQTASLGIRNVDTTLVK AIKNDHVHFHDVSSKESAKTIIRDHDYAGLISQKGDQITLTLQNSDQSKSAILKQSLQKA QIKLKMEAAATAIKGQQKTIKAQQRALSQMQKSLSAASKTAASENPSAARRQVKTQTPLT TAGKPKSATTYSVNTHYLYGSSDSTFFDTLLPIMIGFVVFFFVFLISGIALLRERTTGTL NRLLATPIKRGEIISGYLAGYGIFALIQTLLIVGFTILAFKIQILGSVWNILLINILLAF VALAMGLFISTFASSEFQMVQFIPVVVIPQIFFSGIIPIDQMANWLQPIARIMPLYYGAS AMSNVIEKGVTFMDILPKLGILVGFAALFLILNIFSMRRYRQV >gi|238617817|gb|GG669604.1| GENE 515 539750 - 540481 280 243 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 233 1 233 305 112 32 5e-23 MATTIQVSNLKQGYGKTIVLEDINLTVHNGEILGLIGPSGAGKTTLVSTIMGMLRPQEGT VTVLGQKMPNRKLLGKIGYMAQTDALYSALTARENLKFFGAMQGLGSADLKKQIPYAAGI VNLNPDLDKYVKDYSGGMKRRLSLAIALVSNPDLLILDEPTVGIDPELRQQIWAELHNIA KEGKTILLTTHVMEDAEQSDQLMMIRNGIAIAQGTPDQLIKDYQVKTVEDVFLKAGRQQD AHS >gi|238617817|gb|GG669604.1| GENE 516 540888 - 542060 1228 390 aa, chain + ## HITS:1 COG:SP0035 KEGG:ns NR:ns ## COG: SP0035 COG0436 # Protein_GI_number: 15899981 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 4 388 3 388 389 397 50.0 1e-110 MSKLSSRMNKRVAALTPSSILTFNQKISKIPDIVKLTLGEPDFDTPEHVKQAAIEAINDN ESHYTNSRGTLGLRKAATHYLDKKYGVEYDPETQILITAGATGAIYSALTAMLNPGDTVI IPTPIFPLYIPIAMLGGATPIFVDTSDNGFILSPEKLQQAIEENKDTVKAVILNYPTNPT GVTYHKEDLQKLADVISKYDIFVLSDEIYSELTYDGTHVSMGSILPEQTLVMNGVSKSHA MTGWRIGMICGPADVINEIGKVSEFTITSATTNAQAAAEEAFKNGMDDAAPMRAAYIKRR DLLIDGLSKSGFSCPNPNGAFYIFAKIPDSLNQNSVEFCNQLADEAKVAVIPGASFGPGG EGYVRISYAASEADLKKAIERIQKFAEQKV >gi|238617817|gb|GG669604.1| GENE 517 542121 - 543113 958 330 aa, chain + ## HITS:1 COG:TP0037 KEGG:ns NR:ns ## COG: TP0037 COG1052 # Protein_GI_number: 15639031 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Treponema pallidum # 1 323 1 323 331 233 35.0 3e-61 MKILMYTVRPDEQGPINEWAKQHPDYHIDTNTVPLNADTVDLAKGYDGVVILQHASIPDP IVYQKLREFGIKQLSLRSTGYEIIDLAEATKNGLAVTNVPGYSPRSVSELVLADVMYLLR HLGEVREREQHGDFRWTNTEAKEIHTLTVGIIGAGKIGSAVARIFRALGATVIAADPIHR PDLNDTLTYVDHETVYKTADIVTMHTPLTDETHHMINAKVFKEMKSTAIFINASRGPVVK TEDLVNALDNKEIAAAAIDTFEGETPIVNHDLTGKPIHNDNLEKLLAMPNVNVSPHIGFY TEVAVQNMVEITLNDVETILQGKTSLHQVN >gi|238617817|gb|GG669604.1| GENE 518 543222 - 543728 643 168 aa, chain + ## HITS:1 COG:L16252 KEGG:ns NR:ns ## COG: L16252 COG3467 # Protein_GI_number: 15673938 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein # Organism: Lactococcus lactis # 1 158 3 160 167 123 37.0 2e-28 MRRTDRELTDIGQIKSILADAEVIHLGIRTDRYPYVVPTNYGYEFDTNNQLTLYIHGAPV GHKRDLIAEDGRVGFAIDTDGQVLNPKDPDHDTPSFKYRSVMGYGDAKLVDDLDQKRYAL QRIALHEVGHEWANLPDAAVEHVGIIQITVNQFTAKANPGDSQKYVQK >gi|238617817|gb|GG669604.1| GENE 519 543811 - 544851 824 346 aa, chain + ## HITS:1 COG:BS_yhfJ KEGG:ns NR:ns ## COG: BS_yhfJ COG0095 # Protein_GI_number: 16078089 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Bacillus subtilis # 1 339 1 330 331 243 39.0 5e-64 MFFIDTSRHGQPVYDPVVNQSLDNYLVNDLKLPGHGLIMYVNQPAVIVGVNQNAYAEVNM PYLKEKGIKLVRRTSGGGAVYHDYGNIIFENIVINDDTHFGDFNYFAQPIIDALHDMGAK DAQLRGRNDMVIGNSKFSGMTMFKVGQSYAAGGTLMFDLDMDVATKVLTPEKDKLASKGV KSVHSRVTNVKPYLDPQYQKMDIEAFKEVLLRHLFKANSLDDIDTYHLNDHDWSIIDDRL KGKYDTDEWNYGQNPGFDYYVSKHYDIGTVSFNFSLSQDNRISAIKIYGDFITGGNISLI EKALARTELTQKALVRALDSVDLKANLGDIQADTLADLLMEKTRTK >gi|238617817|gb|GG669604.1| GENE 520 545029 - 546876 229 615 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 393 592 37 242 329 92 33 4e-17 MKMFHLNRGHGMMQQTQTQNKAANKATEDENQSNVTMAGMFKFVFGTVLKRPWVLVLNVV VLTILSLMDFLLPQFNQYIIDHVIPNKSVSQLIVVVGLLLLTVTISGIFTYLSTYWMGVM SQGAITNLRNQLYRYLIRLDTHFFESSKTGDLMVRLTSDINNLQNLISPNMLSLIGSLFT FVGVLVFVYFVNWEMALAVSLTFPFIFLVVRIFRTRIRESYRKARQSQALMTNQLQNTLT EIQLIKSYTTEDLETNRFDKLANMNKDNIIEATRNQAIFSPLINFIEYLGTAIVLLLGTI FVFKKQLTLGELVAYLSYVGILQSPISSFSRLLNQFQQSLVSYGRIMDIMALKPQILDAP SAVDFPKIKTGVVFDHVTFTYDVDDPEASHKPAIRDVSFDIPFGEQTALVGHSGAGKSTI TELLDRLYDIDNGQITFDGVSIKDIKLRSLRQNIAIVSQDIFIIDGTIADNIKYGTPGAT QDQLWEVAKLADIDAFIKGLPDQMKTQVGERGIKLSGGQKQRIAIARALLKDAQIVVLDE ATASLDNESEKTIQHALENLMEQRTSLVIAHRLSTIHNADQILVVDDGEIVERGNHTSLM AQDGYYKQLYEAQFE >gi|238617817|gb|GG669604.1| GENE 521 547168 - 548109 407 313 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0306 NR:ns ## KEGG: Lbuc_0306 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 2 309 5 310 371 432 69.0 1e-120 MKLLKCFFFVLGLSVFFACRPTTINAKFVVYHQRSSGLIYHRHHMRYLNNSKVHYIHVPK HYHHAAAATKRHTIKSVKGKPVTFTTRYVLPFPGKDGQHWGNPQSIAMTGKKYMYVVYCP TSLHNKGRIVRFNTQELDLLGVRLHPNELRDAYVKKDGHYSFIQKQIHKTIKVGPLFTTG HGQSLAYNWKSHGMYMWRDKEKAPRVPVNNWGYIQHINVKRLRPDHAIRFRLRNRGLSVP GGHNLTFDKNGNAYFWSFPGWCAYIFKGKIHHKSVKFKLTKQKLRHLPGTRIQSMAYNST RKRLLMISDELAS >gi|238617817|gb|GG669604.1| GENE 522 548116 - 548313 96 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPPQALIKISELFYTSISLWKSKFYVMDITKKRPTHAFRWLIVIPMMITVGLLLLKVLPQ LLLVL >gi|238617817|gb|GG669604.1| GENE 523 548258 - 548698 380 146 aa, chain - ## HITS:1 COG:XF1890 KEGG:ns NR:ns ## COG: XF1890 COG0386 # Protein_GI_number: 15838488 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione peroxidase # Organism: Xylella fastidiosa 9a5c # 1 146 34 184 190 156 46.0 1e-38 MSGKPLNLKDYQGKVLLIVNTASKCGLAPQLEGLEDLYKKYQEQGLVVLGLPSNQFHQEL ESDEKTEEYCQLHYGVTFPMTKRVAVNGDDEDPLFTYLKETSGHGKIKWNYTKFLIGRDG KLIHRYAPITKPEAIEAELSKAINQQ >gi|238617817|gb|GG669604.1| GENE 524 548859 - 551471 1987 870 aa, chain - ## HITS:1 COG:L111162 KEGG:ns NR:ns ## COG: L111162 COG0577 # Protein_GI_number: 15673086 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 1 868 9 894 896 447 31.0 1e-125 MHKLLWRDIRQSMGRFIAISLIILLGVLIFVGVKATGPALIDSAETVLHKQQLSDVQVIS DKGFTNKDVQTAEKVAGAKAEKIKFKYVLGGRHKDAVALYGFSQNHGLNQLKLVSGHLPK TKNDIVLDQRAQRLNHYKLGNTYTFKKSANLKQQNYKIVGFANSPQYIDNTTRGATNIGT GQVAYFAYIPSSQMNLPVATAINVRFSSLQSLGSFTSRYKHAVNQKVVRLKSAFKSRTSE RKAEIMSVGEKELLPAQERLATAQKKITSAKRRLSSRSQGRIKTTAALTAQQQKLDLERQ KLINAKNDLSKTATPTYTWSTREDLAGFSAYGESADRIAAIANVFPVFFFLLAALITFTT VTRMVEEARMQIGTFKALGFSNASIARNYVAYALLAGILGVILGSFIGNQFLPRFVISIY SEYIFHIPVIHYQWFQILLAAIFSLVATVGAALYVILKQVNEVPASLMRPKSPRTAKSIW LEHFTWLWSKLKFYQKVSYRNLFRFKSRAIMTILGIAGGTALILTGFGISDSIGASGHLQ FNQVIHYQAIVQATHKDQLSNVKHTIQNNSHYQSSTPVGTSVVKVRSTHNQLNDVNMYVP SKPEFFGRYVHLNSTSSGNKLRFPSKGIIISQKIAKTLAIKKGDKIKIVFGNGKAVSIKV AAVTKNYIGHFMYLSPQAYQNAFHKKAIAKTLFVRLQGTTSSQRTNLGKKWLADNPHVLG VNFTADQKKTVSNMSQQMTPVVLIFILLSGILSFVVLYNLTNINISERIRELSTIKVLGF FDREVTMYIARENIVLAIIGIIVGFGFGNLLTAYVLYQAETPTVVFPLTIHIQWYFVATI LMILFNLIVIMVAHRHLKRVDMVEALKSNE >gi|238617817|gb|GG669604.1| GENE 525 551483 - 552184 310 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 230 2 228 245 124 32 2e-26 MAYIDVKNEFKKYQMGDTEIVANNNISFQVNEGSLAVILGPSGAGKSTVLNILGGMDSPT SGKILVDGTDIAQFNDHQLTQYRRDDVGFIFQFYNLIPNLSTKENVELATSIVKDGLDPV NVLNEVGLSARLDNFPSQLSGGEQQRVAIARALAKNPKLLLCDEPTGALDYTTGKQVLQL LSDASRTFHKTVIIITHNSEIAKIADRIIHINDAKVRSVIDNAKPTPVSDIEW >gi|238617817|gb|GG669604.1| GENE 526 552548 - 553615 716 355 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0307 NR:ns ## KEGG: Lbuc_0307 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 355 1 354 354 476 69.0 1e-133 MKVKQLLLGTVAGIGLVGSGMGIASAATYIQRSNALIQYSSSSLRTVNNSHVHFVKANSN YAWSKNPSGADTIKSASGTKWAFETKYLLPTTHAALGKSSHDMTNPQAATYAGKYLFVLY APHNTVGRGFVVRYDTNELNKMSFNATQNALLTKRPSGIKVGPQFTVGHGQSLAYDQKHH SLWMWRDRADMKSTATSTIQKISSSKLKPDKAIKFSMNNRGAMVPAGHNLTFDRSGHAYW WGISGGKVKIYRGVFGKRTVKVSLTKQLLAKRTGTHEQAMGYNPHNGRLYLVSDDSIQTL PARKTYGRGSLKPGDIKYTRFHSGREFESMTFDKSGHAMLLTNRNPELMRSTSRY >gi|238617817|gb|GG669604.1| GENE 527 553643 - 554008 230 121 aa, chain + ## HITS:1 COG:BS_yvdC KEGG:ns NR:ns ## COG: BS_yvdC COG1694 # Protein_GI_number: 16080518 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Bacillus subtilis # 16 119 1 104 106 101 46.0 3e-22 MVSLNSSTTNTEMDYLELSDHTNWLIDFYEQRNWYQYSPFIRLNFLTEEVGELSRAIRAI EIGRDHPGEKVKSKPELRDNLVEELADTMDQVLILCGKFDVDPEKLMMASEKKLRSRFQK D >gi|238617817|gb|GG669604.1| GENE 528 554271 - 554792 467 173 aa, chain + ## HITS:1 COG:L53789 KEGG:ns NR:ns ## COG: L53789 COG1309 # Protein_GI_number: 15672643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 85 1 85 189 64 37.0 1e-10 MVSTTFLNLNNEKKTRIQKALIDEFSSKPLAEAEVAPIVKQAGIARGAFYKYFDDLRDAY QYIYELAMKSIHGRIDREVADNRFEPDFYVNQVTSFVDGVCQSDYRNLVKMHLRRNESLI DDQFDDVHLQGRQWAAMVLSHQVIKQILLNPKEKDVLVKRLQDVLTQLARERS >gi|238617817|gb|GG669604.1| GENE 529 554796 - 555860 962 354 aa, chain + ## HITS:1 COG:L130944 KEGG:ns NR:ns ## COG: L130944 COG0577 # Protein_GI_number: 15674237 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 1 353 2 357 357 235 38.0 1e-61 MYLALKEIRHEKLRYTLIIAMIVLITYLIFILSGLATGLAGENTQAIESWDAKSVVLNRD ANVNLSQSTITDAQVKNAKLTKNQALIGQAPVVVKHSDRKKESAQFVGVKKNQYIAKALT PSNGRQARNNKEVVADEQFKADGYKLGDKIKFNSSSTKYTIVGFVKDAKLNVAPVVYGSL KTWQELRDFPGGRLAGSAIISKTANFNGHDKALKTYSNSYFISKLPGYAAQNTTFGFMIG FLMIISLVIIAVFLYILTIQALPTYAVLRAQGIPAAVLVKTIISQSLILMAGGIVIGALL TFITANMIPFGVPISFNVPMLAGMSIGLLLMGVIGAAIPARKIATVDPVRVIGG >gi|238617817|gb|GG669604.1| GENE 530 555864 - 556565 244 233 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 22 201 20 199 223 98 34 7e-19 MAVIELKNINKYFGSGTSRVHVLSDVDFSAEKGQLILVIGPSGSGKSTFLTIAGGLQTPS SGDVIVENQSVDQLSKKQRDKLRLNHVGFVLQSYSLVPYLKVKEQLEFVRKVKPKGNLSD SELKDLLAQLGITDLVNKYPGQLSGGQTQRVAIARALYANPEIVLADEPTAALDSARVVE VGKLFKELADTRKKAVVVVTHDTRLMEFADKTYEIMDGKLHLKNTAEMGQTSK >gi|238617817|gb|GG669604.1| GENE 531 556846 - 557913 836 355 aa, chain + ## HITS:1 COG:lin0931 KEGG:ns NR:ns ## COG: lin0931 COG0095 # Protein_GI_number: 16800002 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Listeria innocua # 19 343 12 330 331 209 35.0 4e-54 MMAILYVDVSSGDDYLAQPAIGQYLSTYFITNPKFNDEVIFFYRPKTPIIICGVNQNVYS EVDLAYCKAHGIKIARRGAGGGAVYVDPGNLTYCFVDNDDSHHYLDFKHYAQNAIATLKD LGVDAAMTGRNDLTVDGKKFSGMSALKIGNRFSTGGTLMVDVDLDNASRALRPPKSKMAS KGVKSVHSRVTNLRPYFSSHYQNMTLSQLQTKFLLKLFHTTNLNQIPTYVMTDEDWRAIE KAATKKFGDQKWIMGEQTTDMYYHLQHFAGVGTVEISFSVDSGVLTHAKVFGDFNKMNGN LHQIETQLIGTPYNTASLTEAFTQGDVAQNIGNIEPASLAEMLIDQQFADKATIN >gi|238617817|gb|GG669604.1| GENE 532 558046 - 559446 1191 466 aa, chain + ## HITS:1 COG:MJ0929 KEGG:ns NR:ns ## COG: MJ0929 COG0015 # Protein_GI_number: 15669119 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Methanococcus jannaschii # 15 451 22 460 462 204 28.0 2e-52 MSGEVLGSMFNQNGYSTARMRAVWSDENRLKIVCKVETAVAYAMSKNKKMPLSAYEEIKE KIVPENYDMTKLRLSAARAGHFLAGFVSYSQQLFEDGGGQYLHYGAASEDVEDTCYVLQL KQADKIIMDYLVKFGSVLYDLADKYKKTINVAMAHRTYSSPSTLGFKLGIILNELDYLMR RLDSLSDFTFAGSLTGVEGLSTMVGDNYDQVETDFCDYLDLQVPEMYWHTQRERFTEYCH VLTMIAQMLGKLGKNLLTMSQTQVGEFQEAYAPGRQGSTVIPTVREPYMCEAIVNLSTII RNEMPLMYDTMQVSGEKDTAVWRDIYVVLPEMTMYLSGQLNYATTILKTGKFDTKRMAEN FILGDGTMYSGALMMALAKKGMGRQDAHELLVRLRVKADEENKLLKDLFYSDDTIAKYLS RQDLDKVMSPEAGVPHALEKTNKILGLYRKRHPLNKKGVINNGTNS >gi|238617817|gb|GG669604.1| GENE 533 559430 - 559738 403 102 aa, chain + ## HITS:1 COG:lin2519 KEGG:ns NR:ns ## COG: lin2519 COG0509 # Protein_GI_number: 16801581 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Listeria innocua # 12 101 15 103 125 65 41.0 3e-11 MAQTADDAKYLWQKKLDNVHIRIGFNDVARQEIGEISFAKFPDNLTEVKLGDVILSIEGA KAVSEVHTPVAGKVAKVNVALKDHPEYLESSDEDKNWVVELF >gi|238617817|gb|GG669604.1| GENE 534 559875 - 560378 552 167 aa, chain - ## HITS:1 COG:MA1614 KEGG:ns NR:ns ## COG: MA1614 COG2110 # Protein_GI_number: 20090472 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Methanosarcina acetivorans str.C2A # 3 163 28 192 195 177 52.0 9e-45 MAKLNVIKGDITKVNVDAIVNAANRALSGGGGVDGAIHRAAGPQLDEACRKLNGCPTGQA KTTPGFNLPAKYIIHTPGPIWHGGQRNEPQLLKDSYVNSLKQAVLHHCQTVAFPSISTGI YDFPLDKAAGIATAAIQDFDTPLDVTMVCFDSMTYDAYVKALEAAKG >gi|238617817|gb|GG669604.1| GENE 535 560734 - 561060 132 108 aa, chain + ## HITS:1 COG:L106356 KEGG:ns NR:ns ## COG: L106356 COG2151 # Protein_GI_number: 15672865 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Lactococcus lactis # 8 106 10 109 110 105 48.0 2e-23 MDKSANGLSPIEQAAMASLQDVIDPELGVDLVNLGLIYNVSVDDTHCIVTMTLTTMGCPL GNLLTDQIKTAVTAVDGITTCKIHLVWDPVWDINKMSRFAKVVLGIHG >gi|238617817|gb|GG669604.1| GENE 536 561240 - 561971 500 243 aa, chain + ## HITS:1 COG:no KEGG:lp_1483 NR:ns ## KEGG: lp_1483 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum # Pathway: not_defined # 1 240 52 286 292 245 50.0 1e-63 MGMTVDELNQDPSSSVTVIRRRLNAIEKDLMMENYLQVQSALKKINEAHITAIPLRMQFF YLRGMLNAVTNKKPDEVLFDFSQILDELDEKHQTIFTQLAYIGSGITYTRINQPVRADFF FKKAHEFINEALKTSSDDEEGHDNYLRLLTLIFYTANYYASKSNLTLSDKLLKSGVELCS QNHVTYYLPRLKFLAAQNAVHEKANEDDIRQLLDEALAFARLNHNQVIELRVAALKNGYV SNV >gi|238617817|gb|GG669604.1| GENE 537 562059 - 562712 664 217 aa, chain - ## HITS:1 COG:SA2179 KEGG:ns NR:ns ## COG: SA2179 COG2197 # Protein_GI_number: 15927969 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Staphylococcus aureus N315 # 2 217 1 217 217 203 47.0 2e-52 MLKVLIADDHAVVRQGLAYLINGQPDFKVVSEAANGTDAYARVEQGNIDILVMDLSMPPG ESGLVTTQRIHEHFPDVKILILSMHEEQEYINKAIHNGALSYILKSSPDSEFISGLNALS ANRRYIDQNITLSKSDIKQIEAGGVDAHLQGYRSLSKREREVFPLMALGYTNKEIANRLF ISTKTVEAHKASIMHKLSLNSRPELVRYAVHHHLIEF >gi|238617817|gb|GG669604.1| GENE 538 562727 - 563755 909 342 aa, chain - ## HITS:1 COG:SA2180 KEGG:ns NR:ns ## COG: SA2180 COG4585 # Protein_GI_number: 15927970 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 8 339 13 344 344 150 29.0 4e-36 MLETHNWIKRYFDDATDAILIFENNDLIVCNRIANDLQKIVKIDPQYLLEVANTAVKQRF SQTDSCFSCAIKNHMQEISIPITLAQESAHPLRYFLVYRLIDKDDHVFSLTLKNRGVIKR MDQLAQQRQLNQYVNRAHEEERKRISQDLHDSIAQGVYSAIMGVRRLSEDVLTHDQVTEL TREIEHQLNDTLTEVKGMALDIRPSVLDNFGLLPALRVLAKRLSENSGVNISVVGNAKTD NLSTDVQSVLYRIGQESINNALKHAQASEINILLVAHEHYIMLEIIDDGIGFDVPKHHRF NGRSLGLMNMNERIKALNGTFEIKSQPGSGTTVTAKFPVVLS >gi|238617817|gb|GG669604.1| GENE 539 563964 - 564335 397 123 aa, chain - ## HITS:1 COG:lin2484 KEGG:ns NR:ns ## COG: lin2484 COG2050 # Protein_GI_number: 16801546 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Listeria innocua # 4 104 3 103 123 99 46.0 2e-21 MSNLMETLGIKTISIDKTKVIISLEVSDSVKQPYGLLHGGVNAVMAETAASLGANQNVGP DEYAVGVSINTQHLLPVTSGLIIATATPLQLGHRIQTWQVTITNYDQLTSTSTVILTNHT NKK >gi|238617817|gb|GG669604.1| GENE 540 564375 - 565196 778 273 aa, chain + ## HITS:1 COG:lin1781 KEGG:ns NR:ns ## COG: lin1781 COG0447 # Protein_GI_number: 16800849 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroxynaphthoic acid synthase # Organism: Listeria innocua # 3 273 2 272 272 435 76.0 1e-122 MTSVNWKSVKKYKEIIFERADKIAKITMNRPEKMNAFTPVTVQEMIDAFNICRDDSTIGV IILTGAGDKAFSSGGDQGVRGNGGYVGPDHIARLNVLDLQHLIRIIPKPVIAMVKGWSVG GGNILQLVCDLTIAADNAQFGQTGPKVGSFDAGYGSGYLARVIGHKRAKEVWFLNHFYSA EEAFQMNWINKVVPLADVESETLDWCNEILTKSPTALRFIKAAMNADTDGLAGLQQLGGD ATMLFYTTDEGKEGRDAFNEKRKPDFDQFPKFP >gi|238617817|gb|GG669604.1| GENE 541 565223 - 566638 763 471 aa, chain + ## HITS:1 COG:lin1780 KEGG:ns NR:ns ## COG: lin1780 COG0318 # Protein_GI_number: 16800848 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Listeria innocua # 10 467 9 466 469 389 44.0 1e-108 MTKQAALFPKRIAVDDGEERLTFSELVKRLEQLSGQLGRVGVLQGSRIAIMTKNGLLGYQ MALAVLGSGQTIVWINWRLADNEIKRQVRDSRPTICLVEDALWRDSFHNGFMKFSQVQQI KSQPRQLVSQFNSGDVASVMYTSGTTGEPKGVMQTFGNHFSSAIASSLNLGLTSHDDWLC AVPIFHISGFSIIMRGLIYGMTVRLVSHFDPVLVDRLLRTEPVTTISVVPYMLKKLLDLR DQKSGAYNPDFRCMLLGGGPIDRQTLTRCQTYHVPVVQSYGMTETCSQIVALNDVDADTK IGSVGKPLFLTQLKLSENGGEILIKTPALTSGYLSRPEALFNKKTTDGWYRTGDVGHLDS DGFLYVDGRIDDMIISGGENIFPDEIEAVYSAYPGVDEVAVIGVSDKQWGQSPVAFIVSS KPLSTQKLVAYGRQRLAHYKVPKHFYQIDHLPTNAGGKVQRYKLRKRLNDR >gi|238617817|gb|GG669604.1| GENE 542 566751 - 567257 342 168 aa, chain + ## HITS:1 COG:no KEGG:lwe1147 NR:ns ## KEGG: lwe1147 # Name: not_defined # Def: hypothetical protein # Organism: L.welshimeri # Pathway: not_defined # 6 161 3 159 164 132 48.0 5e-30 MRNDYLKKLMLTTIFLALCVVGANVKILGSIALDSAPAFLGAILLGPAIGAFLGFFGHLL SAMLAGFPLTLPVHLIIGVMMAACMFVFGLLRQRLNLSRGLVIVISDAIGYLINVPLELT LLYPILKQSVVALFLPLTIATVLNLILCELVSAALPKRVRRTFKALKH >gi|238617817|gb|GG669604.1| GENE 543 567291 - 568019 457 242 aa, chain + ## HITS:1 COG:no KEGG:lin1110 NR:ns ## KEGG: lin1110 # Name: not_defined # Def: hypothetical protein # Organism: L.innocua # Pathway: not_defined # 2 241 3 242 247 176 42.0 6e-43 MKFRDLTIKPISDKTALVIACDVSAGIGEKPDDLVHVTADVTAAFALRVPLMELLCFGAT PISVVDTVGNEMTPTGENMIAGLKQELKRAGLSDISLNGSTEDNMPTRTTSIGVTVIGIA TRRVDDLFQKQPMVIYQLGRPLVGDAVKQHFSDLFSYNLINELRSDSAVIDMLPVGSKGI AFEINQLAKTHQLKVVDGSVMETEEMVKSAGPATVALIGVKPEKRRVFERHFPQVSYLMS LT >gi|238617817|gb|GG669604.1| GENE 544 568043 - 568801 742 252 aa, chain + ## HITS:1 COG:lin1112 KEGG:ns NR:ns ## COG: lin1112 COG0368 # Protein_GI_number: 16800181 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin-5-phosphate synthase # Organism: Listeria innocua # 2 252 1 248 248 133 35.0 3e-31 MIQGFILYTQFFTRIRIPVEIKDPGHKFRDNIQYFTLFGLILGCLEATLFLGYTYLFPQW FAWMLFWMTDGMITGGFHLDALADTADGVMSSRTPDKMFKIMKDSRLGTMGTLALIYFYA ILFGVGAILAVRFDRFQLTMLVLISVMMAKTGISLLFYKMTYAGEAPGLATIWQGIKTWR IGISQVVSLVVIGVLLGYPGLISYLAVLIVAYGYRRYMLALLGGFSGDTLGGFAEISQVI FLLAYVIVTKLM >gi|238617817|gb|GG669604.1| GENE 545 568813 - 569403 443 196 aa, chain + ## HITS:1 COG:alr3338 KEGG:ns NR:ns ## COG: alr3338 COG0406 # Protein_GI_number: 17230830 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Nostoc sp. PCC 7120 # 1 180 232 415 449 101 33.0 8e-22 MKLYVARHGQTDYNQQKKFYGSSDVPLNANGRKDAAKLADKFEALPLGLIVTSDLKRARQ TARPIIATHPESDSQLSSKLEESHFGAWEGLNADEIQATFPEDWQNWLDDPFHVSPTNGE NFQDFNTRVLAGLKNILSDAASNDHILLVAHLGVLRVINQSFFPESNFWEQKFPAGTYSV YQLDEVGRCVGVVYDV >gi|238617817|gb|GG669604.1| GENE 546 569592 - 570869 879 425 aa, chain + ## HITS:1 COG:STM0520 KEGG:ns NR:ns ## COG: STM0520 COG0477 # Protein_GI_number: 16763900 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 22 413 11 398 415 238 34.0 2e-62 MDGNIQNIDAKSKAAVNVSRRYWWKVVALCFVGWILIYADRTILNPVQEQIGAQFHIGNT QLGLVNSIFFLTYAICQIPFGILGDRVGRRLVIMGGFIVLGIMTFFSGFAFSFGIFLLFR ALAGAGQGTYYGPQYALSTEAIPTKDLTLGTAIINSGMAFGTSGGYLLSSSMVLQHGMAW QTPFYVMALPTIIVGVLFYVVLKEKVIRPEDQGNTEKTAEVKKSEESKVQLKDLFKNRNL VFAFILCFCSIYANFVILTWLPQFLQVERGFQGSSVGFISSLVPWASIPGAIVFARIYDK LKKTKLMIAFLVPISLVAVFGIAFVTNKLLLIVLLIVYGLTGKLAIDPILVAFVTKNSPR GSLSTALSAYNFIGMSGSILAPYLTGWISDQFGSMQIGFYLAAVLLLVGLVLFTFTNDKK NLVQG >gi|238617817|gb|GG669604.1| GENE 547 571250 - 571813 453 187 aa, chain - ## HITS:1 COG:no KEGG:LVIS_0068 NR:ns ## KEGG: LVIS_0068 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 9 176 5 172 180 136 42.0 6e-31 MKQYIASGKEVTYSALGIGIFTFFYGLISGSLAFWMAPVAFITSAFYAGMDESKKNPWNV SLSFGMGIIWGLIAYNLFQIPNMNMLWWTSSVFGIMALIAILLQGTLLKATFIPAWLLAW GTFMEISLNIKINNWYVFVLQLACCMLLGVFFLDYGSDFFKAVMYRWFPEKDKDQSDPKS NKKVKID >gi|238617817|gb|GG669604.1| GENE 548 571964 - 572806 367 280 aa, chain - ## HITS:1 COG:SA0310 KEGG:ns NR:ns ## COG: SA0310 COG0657 # Protein_GI_number: 15926023 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 1 278 1 273 275 143 31.0 4e-34 MQTISYSTGEKITVHATFWKSEAKVKKPTIFYIHGGGLIYGNRNDLPAPYVKLLLESGYS LFSIDYCLAPECSYSAIIQSVNDGLKFFLMNSKKLGLLNNDYILFGRSAGAYLCLQLMTE NLSQKPKAFVDFYGFESLLSTNLQKKNSMYASYPKVTFEEAQSMISTSPVTSSSVEERFL LYVYARQSSQWQKMIFKETQSKEKQLSKSTLQNFPPTYMCQSSSDPDVPFINSIMLKAKL PNSKLIPINSKEHDFDREVNETNLDCYRKLISWLDAVTEH >gi|238617817|gb|GG669604.1| GENE 549 572822 - 574441 883 539 aa, chain - ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 7 535 5 531 531 128 22.0 4e-29 MAIILKDIQKIESLNNSKLIAGSAGLNNPVENIMITEAPDVEQWITPNEVLLSSLYGFDN LSEKAIGQFMRSLHNHNCSGLIIKTSRFVNEIPQTIIDDCNQYKIPLIEIPKNIKYNDIM LESMQLLFNEKNLLLNQYKKINQQFIQLAIQNSSFNAIVNLLSSLVSNPTFIFKIEDNIA SNIIHNDQNTHKLKEIDFTQRRPVPKKEYTNYQYYEVTLTDKSFKLLMVKIPQSQDQLYL GVLQENQILQDVDFMAIENAVNFTQMEVLKQTALNQGLRTYANDIIDDLINGKIASEEEF QATLKHFNLVETSNYRVTVVQALKEEKVQPDYYRDNPREADRVVSQFKLYWPNTVYRIRQ NRIILIISEDQQTPEKLQDNLQKILQTLEDTHPNLNFQIGLSETCHPKDFKVYASQALKT LQIASHLNKRNQIFNYNDLGFYRFLFQVDNPEKLRSFVPEDLLKIYKDKPELYTTLKTYL EHNQNAKASASALFIHPKTMSYRLNKIQERTSINFSDVDEVFRLNVGIRVLNVLNDETV >gi|238617817|gb|GG669604.1| GENE 550 574697 - 577678 2665 993 aa, chain + ## HITS:1 COG:ECs0580 KEGG:ns NR:ns ## COG: ECs0580 COG0074 # Protein_GI_number: 15829834 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Escherichia coli O157:H7 # 1 560 18 555 555 360 40.0 5e-99 MLLTKNISSMPGVKEVQVMMGTDANKDIFDEAGLLTDEAKSAEPNDMMIVLDADKKDVMD DVLKQIDKFLNDLSVKSDDSDSDSKKVTNWDDAMKSIPDANLAVISVPGLYAADEIDNAL DHNLNAFVFSDNVSLEDESRLKKKAHKKGLLVMGPDCGTGIISNVPLAFTNVVRSGNIGL VGASGTGIQEVTSMIERLGGGVTHAIGTGGRDLSDSVGAITMEDAIAGLAHHDPTEVIGI ISKPPAKEVRDDVVSLLHSIDKPVVAIFLGEKPDHHEDSVYLAHTLEETAKIAMDLADNK PVKDNYYSKKPLADADPKLEGKHIIGLYSGGTLAYEAGMLVSEALNLGGIISEDGYVLKA KGNEVLDLGDDIYTQGRPHPMIDPRIRIEKISEYANDPKTGVILLDDVLGYGTDDTMAES LADAVNNVSRKHPRIKFVATVVGTRDDPQDYDAARKTLQDAGIIVLDSNAQAVRYALNLI GKDLNEPDKKVVNYTGGTREVPTPSESVLDLLYTKPRVVNVGLSEFLDPVIKFGGTGVQF DWKPVAGGNPKLIKIIKKVKALQNRDQENAKIVDAYKKAAPFLVDVVPAGTVISELKGHT LLHAGPPIEYNEMTEPMQGGCIGAILFEGWADNEDDARQMLESGDVKFLCNHDVNAVGPM GGITSAHMAVLVIKNALKGNDAYCTMNEGIGKVLRFGAYSEEVITRLKWMANVLAPTLSA ALKKLDGGLNVNVMMAKAITMGDEFHQRNIAATLVFLKEVAPLIVSLNISEKDKQDVIQF LADTDQFFLSIMMATGKSMVDAARTYKHGTVVTTMTRNGKDFGIRISGLGDQWFTAPVNT PQGLFFTGFSQKDANPDIGDSAIAETVGFGGMAMIAAPGVTRFVGAGGFKDAQKISNEMA KITLDRNPNFTIPTWDYQGTAIGIDIVKVVETGITPIINTGIASKVAGVGQVGAGTVHAP LACFEKALIAYANNMGLLEDDDATLLEKELVKE >gi|238617817|gb|GG669604.1| GENE 551 577682 - 578536 540 284 aa, chain + ## HITS:1 COG:no KEGG:CAR_c00510 NR:ns ## KEGG: CAR_c00510 # Name: not_defined # Def: hypothetical protein # Organism: Carnobacterium_17-4 # Pathway: not_defined # 14 270 9 271 288 116 30.0 9e-25 MFMSLNHNQTNGEKSNMLPLHLFNKDHGIINTMFQHSFNIDFPDLLFHVGNESDSLSCTG ITLEDDVVDELLKYIDVNDPVSFIKGKLYLYTKKEIRTIDLEPLKTVDLRIPQIKLDLNF LKKIIEKFNIIDFQNDWGLSDEYSPNKVIKMLIESCDPEQIMETLKFLYGRGRGLTPSGD DIIVGFTSVLSAFGFKQLTLWKEQVKIILESRATTDVSESYIQAVLENYTSKKMVQFLKV IRDKDEEQLASSLLDIQNFGHTSGTDTLLGMYAAFMLLKSKFIH >gi|238617817|gb|GG669604.1| GENE 552 578671 - 579921 1058 416 aa, chain + ## HITS:1 COG:STM3334 KEGG:ns NR:ns ## COG: STM3334 COG0402 # Protein_GI_number: 16766629 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Salmonella typhimurium LT2 # 3 406 5 413 426 238 33.0 1e-62 MIDILLKQVRLNDNQSLKDIAISDGKVQKIADEINSPANQIIQGNGHVLIPGLVESHIHL DKALISNRVHNQSGTLKEAIQVTAEAKPTFTEDDIYQRAKRALEMEIEHGVTNMRTHAEF SPETGFVGFKTILKLKEEYKDMIDMQVVAFPQDGIFKLPGMTEMMDEAMKMGADVVGGIP YVDPDPKQHIDFLFDLAKKYDKDIDFHQDFFDDADNISIEYLARKTIKEGYQGRVTVGHE TALAALPLEKLNPIIDLLHEAQINVISLPETDLHLGGRTDTYNVRRCVTPIRRLRKGGVN VALSTNNIRNPFTPFGNGDIMQVGFLAVPAAHLGGLADLPSVLDMLTVDPAKILKLDHYG IKEGNIANLVLLDTKRKADAVIDIPERLYVIKDGRVTVKTEKKVSTYRKNKEKINI >gi|238617817|gb|GG669604.1| GENE 553 579960 - 580919 871 319 aa, chain + ## HITS:1 COG:L93826 KEGG:ns NR:ns ## COG: L93826 COG0549 # Protein_GI_number: 15674016 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Lactococcus lactis # 1 310 2 313 314 350 58.0 2e-96 MSKIVVALGGNAILSKDASAQAQMKAVKETAKELVNFIKNGDQLIITHGNGPQVGNLLLQ QSAADSDENPAMPLDTCGAMTQGSIGYWFQNAMKEELLDSGIDKDVMAIVTQTIVDENDP AFQNPSKPIGPFYKETEVEGLKALHPDWQIIEDAGRGYRRVVPSPKPLEINEYRAIKQVV DAGIVPIVSGGGGIPVVRKGNRLVGTEAVIDKDFSASKIAQLIDADKLIILTSAGGVFYN YGKPNQVELKEVSVDEIQKHIDAKEFAKGSMRPKVEAATSFVRNTGNPAVIGDLEDVKEI IKGNEGTTIVSESVPATVK >gi|238617817|gb|GG669604.1| GENE 554 581046 - 581699 451 217 aa, chain - ## HITS:1 COG:CAC1776 KEGG:ns NR:ns ## COG: CAC1776 COG1011 # Protein_GI_number: 15895052 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Clostridium acetobutylicum # 3 188 5 192 217 160 38.0 1e-39 MDITFDCYGTLLDTRPIQTWLMAFGTAHGIDGQAAWSQFELWEDRLMYGETTLPFSALLK RDLAYMDMTLQTGSLFSNHFNDLINLYTTLTPWPEVIAVLRQLREADHRVIIMSNSTSSL MAAHLNALDHEVDQTILPEQTRCYKPAIPFFDYASKQLEQPHLHVAMGYWWDVVPCHKIG WSCVWINRLKLSALADIKPTYTLPDLKELPLLVQSGY >gi|238617817|gb|GG669604.1| GENE 555 581831 - 583381 1478 516 aa, chain - ## HITS:1 COG:SA1014 KEGG:ns NR:ns ## COG: SA1014 COG1288 # Protein_GI_number: 15926754 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 8 516 11 517 518 746 77.0 0 MDSAIKPKRHFKLKMPGAFVILFILTVVAVAATWMIPAGSYSKLSYNQTSSHLQITDPHG KISNIPSTQKELDKLGVKIDIHQFTSGGITQAVSVPNTYKRLKQHPAGASDITSSMVRGT IEAVDIMVFILVLGGLIGVVKASGAFESGLMALTKKTKGHEFALIFFVSILMVLGGTLCG IEEEAVAFYPILVPIFIAMGYDSIVCVGAIFLASSIGTSFSTINPFSVVIASNAAGIDFT QGIMWRVVGCIVAAAFVIIYLYWYSKKVKADPTFSYSYDDRDEFNHMWEIASTDDHQKSS FTIRKKIILLLFVSAFPIMVWGVMSQGWWFPTMASSFLAFAIIIMFLTGTGNHGLGEKGV VDAFVNGASSLVGVSLIIGLARGINLVLNEGLISDTILQFSSTLVAHMSGPTFILVMLFI FFVLGFIVPSSSGLAVLSMPILAPLADTVHIPRFVVVTAYQFGQYAMLFLAPTGLVMATL QMLNMKYSHWLKFVWPVVVFVLVFGGGILVAEVLIY >gi|238617817|gb|GG669604.1| GENE 556 583489 - 584787 913 432 aa, chain + ## HITS:1 COG:BS_ycbA KEGG:ns NR:ns ## COG: BS_ycbA COG0642 # Protein_GI_number: 16077313 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 119 430 55 387 387 98 24.0 3e-20 MFKQSRFISYGRYQRILVAAICIALASQINFQTYTSGFIITLAVLLLPIFLYFNRDLNPF QLTLAVAVASPIFRGVLLFISQDASANHIIQFTITDMAFYVCYGALYYLIYWRNGQRNNG YFFFTIVLCDYLSNLLEVSLLTGFSHYSYQLFQFLFMAALIRSLGSCSIAFVYHYFTLML RDENHEQRYYHFVWVASAVKSDVYFMRKNISEIENVMKNAYLLNQQLQQDKVDEKQQDMA LSIARDVHEIKKDYQNVIRGLGDYFDDDTSAPMQLADILKVTVNYIREAIKQRHQNIVIE VHNQVDLVVPNHYYVVSILSNLIFNSVDAMDDKANGLIRVTVADDNDQIIINVSDNGSGM DQETLAMIFEPGFTTKFDESTGVVYRGIGLSHVKIITQEQFDGDIQVASKPGQGTDFQVT LSKRRLTQEARS >gi|238617817|gb|GG669604.1| GENE 557 584784 - 585626 697 280 aa, chain + ## HITS:1 COG:BS_ycbB_1 KEGG:ns NR:ns ## COG: BS_ycbB_1 COG0784 # Protein_GI_number: 16077314 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Bacillus subtilis # 1 131 1 131 136 93 43.0 4e-19 MKFYIVDDDPSIPMMLRRIIEKDPQNDVVGIAHEAKKALADLTLMAVDIVLIDLLMPEIS GIELIKQLKQRKPSLRFIMISQVRDSELRSEAYQTGIEFFIDKPINVIEVKTVIEKVIQN IQMTEKLTHIQALVGGSLTAEPVVDQRQKAKERILSILRFLGMTSEAGSSDILAIAQMML EQHLTFREIDFNKAYHIDDREKKILFQRIRRAIKTGLTNLATLCMDDMDNEVVIEYANSL YEYKNVRNETQFLRGTRQTGGKTSLRHFFDGLLNEVNVSD >gi|238617817|gb|GG669604.1| GENE 558 585613 - 585819 66 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYQINREAQMSVNPERELTVFLFHSSENVLLTMPCHLMRANAMVSSDLHICNMLRVTEQN TCLFSLCR >gi|238617817|gb|GG669604.1| GENE 559 585939 - 586973 1058 344 aa, chain + ## HITS:1 COG:L0113 KEGG:ns NR:ns ## COG: L0113 COG0078 # Protein_GI_number: 15673682 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Lactococcus lactis # 2 326 6 324 340 420 62.0 1e-117 MKRDFIDTNSYTRDEIQYLINLGIQIKQDIKLGNYPQLLPHRTLGMIFEESSTRTRVSFE TAMTQLGGHAQYLAPGQIHLGSAESESLGDTAIVLSRLVDILMARVAKHSTVEKLAQTAT VPVLNGMSDYNHPTQEVGDIITMAEHLPAGKKLSDCKIVFVGDATQVCVSTMFMASKMGM KFVQFGPKGYQIKPETLEIGKKNAEISGGSVEISEDADAALKDADFIYTDVWYGLYEAPL SYDERMKIFYPKYQVNDDLMSKASSHAMFMHCLPANRGEEVTDSVIDSPASIAWDEAENR LTAMRALLVYLMAPSMNYSEKQLDDFNDPKLKSMILNLVDNSTR >gi|238617817|gb|GG669604.1| GENE 560 587010 - 588431 1230 473 aa, chain + ## HITS:1 COG:L138484 KEGG:ns NR:ns ## COG: L138484 COG0531 # Protein_GI_number: 15673681 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 4 467 5 466 466 430 50.0 1e-120 MEKEKKFRLFDAVLMAVVVVLVVESVAPAAAIGPSQFFWWGALLILFFLPYGLISAELGT TYDGDGGIYDWVRKAFGKRWGGRAAWLYWINFPIWMASLAVLFTGVIGQVFPTHFGTWTN VVIQLVFIAIVTLISCYPIADSKWILNLAAIAKVVIMLSLGILGIYVAMTKGVASNFTVK TMLPQMDVKSLGYISVILFNFLGFEVVTSMASEMPNPKKQIPQAIIWGGILIAVFYVFAA FGMGVAIPSDKLSTSSGLMESILLLIGGNNWFVILIAIMFMYTLAANLISWSAGVNYVAS YAAKNHDLPAVFAIESKKNGMPIGATLLNGLIAAILVVVSPLIPNQNIFWAFFSLNVVAL LGSYILMFPSFSKLRKIDPKAERPFKVPGNKFMISLMTWIPVTLLVVTVIMSAVPLNGSA EEINGKVPILIGTIITLILGEICIRIAEKHGDKKAHQEASSHIEGHSEHALEK >gi|238617817|gb|GG669604.1| GENE 561 588471 - 589568 981 365 aa, chain + ## HITS:1 COG:L136332 KEGG:ns NR:ns ## COG: L136332 COG2957 # Protein_GI_number: 15673679 # Func_class: E Amino acid transport and metabolism # Function: Peptidylarginine deiminase and related enzymes # Organism: Lactococcus lactis # 2 365 4 366 366 456 58.0 1e-128 MKTLQSSPKKDGFRMPGEFEHHKGVYILWPERPDNWRNGAKPAQHTFVNVAKAISQFEHV TVGVSDEQFANARHMLPDEVEVVEMSNDDSWIRDCGPTFVTNENGDLRGVDWTFNAWGGL VDGLYFPWDKDDRVAQKVTELEHADRYRLDDFILEGGSIHVDGEGTLITTEECLLSEGRN SQLSKEQIENVLKEYLNLDKVIWLKRGIYNDETNGHVDNIANFVKPGVVALAWTDDKNDP QYEISKENYDILSNATDAKGRKIQVEKLYVPKPVTITKEESEGVDAVDGTLPRQEGDRLA ASYVNYYTANGGIVFPEFGDPNDEKAKETLQRLYPDRQIVGVPAREILLGGGNIHCITQQ VPAGR >gi|238617817|gb|GG669604.1| GENE 562 589581 - 590531 994 316 aa, chain + ## HITS:1 COG:L93826 KEGG:ns NR:ns ## COG: L93826 COG0549 # Protein_GI_number: 15674016 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Lactococcus lactis # 3 310 4 313 314 355 60.0 6e-98 MAKVVVALGGNAILSKDASAKAQMKAVKETAKELVNFIKNGDQLIITHGNGPQVGNLLLQ QIASDSNENPAMPLDTCGAMTQGSIGYWFQNAMKEALLDSGINKDVISIVTQTIVDENDP AFQNPSKPIGPFYKADEVAELKAQHPDWEIVEDAGRGYRRVVASPKPLEINEYHAIKQVV DAGIIPIVSGGGGIPVVRKGNRLVGTEAVIDKDFSASKIAQLVDADKLIILTSVGGVFYN YGKPNQQELKKVGVDEVQAHIDADEFAKGSMMPKVKAAVDFVRNTGNPAVIGALEDVQNI IKGTEGTTIVKQRVSV >gi|238617817|gb|GG669604.1| GENE 563 590671 - 591759 840 362 aa, chain + ## HITS:1 COG:L136332 KEGG:ns NR:ns ## COG: L136332 COG2957 # Protein_GI_number: 15673679 # Func_class: E Amino acid transport and metabolism # Function: Peptidylarginine deiminase and related enzymes # Organism: Lactococcus lactis # 2 361 4 363 366 366 48.0 1e-101 MKIKNSNPQKDGYYLAPEWHQHQQSYMMWPQRSDNWREGAKPAQKTFAEVAIKVSQYEPV TMLVSQSQYQHARDVLPESIRVIEMSYNDAWMRDIGPAYLINHHDQVRTVNWQFNAWGGL IDGLYFPWDQDNLVAKKVTDLDRFDYYDVDFVLEGCGYQTDGEGTLMAVEESVLSEGRNG EVKRADVEEILKKDLNVSKIIWLEQGYFMDETNGDVDNLVNFIRPGEVALNWTEDRTDPM FAITHQAFKILSQATDAMGRQLKVHKVSLPRPLLATEEESQGVDPVNGLLPRYAGDRLTA SYINCYLANNAVILPIFGDQHDQEAIDQYQKLFPDRKIEPVYARELLLGGGNIHSIVLGV PD >gi|238617817|gb|GG669604.1| GENE 564 591770 - 592561 578 263 aa, chain + ## HITS:1 COG:BS_yfiA KEGG:ns NR:ns ## COG: BS_yfiA COG1737 # Protein_GI_number: 16077886 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 262 1 251 254 88 23.0 2e-17 MNFFEIIKPYVEKLTKNEYTLLDYVIKHMAEIQNKSIREVAAACFVSTTTFLRFVRKIGF SGYSEFSTVIKYTVLNSDKKADSDVTFVEKQSQYRNEYLKNIEETVRVLDERKLLKICQQ MDKHPKLYFYAKGFSKYTTDYIEYLYTLNDFIVIFPKNYEQRKLAYRNIDQNDIIFVFDY EGEDDELIQLIQNLKSNTQFASLVSITGANNNTIQNMSDENLYLFTDELKINSVDMTSHV SLIVIMELLLYQYLEYKKNKEDY >gi|238617817|gb|GG669604.1| GENE 565 592678 - 593172 410 164 aa, chain - ## HITS:1 COG:no KEGG:LCABL_09580 NR:ns ## KEGG: LCABL_09580 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 146 1 141 160 76 30.0 5e-13 MTATIVLDRFNIYNDRDLTLNKVTETSRMVEDPPFFQIRFYVSSPYFSEDMNGNNQLARK YRRLFNKLKADFAKVNAPIFDSPDNYPTGFESLAQVDQVVKDLQKAIQSKIVIPGKIELN TIELLGNWEVYSGNEETELAQELNRQTNAEVAQWFKDNHIDPNV >gi|238617817|gb|GG669604.1| GENE 566 593209 - 595107 1676 632 aa, chain - ## HITS:1 COG:L96595 KEGG:ns NR:ns ## COG: L96595 COG2217 # Protein_GI_number: 15672077 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 4 593 1 590 593 535 50.0 1e-151 MTQLTNYWRLIGVFLVSALALICQFILGLPQYAQIIISILGSFIALLMFIDMIKTLRSGK FGVDLLAITAVIATIAVGEYWAAMIVLLMLTGGDALEDYAANKANSELKLLIENSPSSAH LMINETINDVNIDAVKIGDRLLVKPGEIIPVDGTITEGTITIDEASLTGESRPVDKQIGD HVMSGAINGDASFKMIADKTADNSQYQNIIRLVKQAEEQPAHFVRLADRYAVPFTLAAYL IAGVAWYLSGDPVRFAEVLVVASPCPLILAAPIALVSGMSRGSRNGIIVKSGTIIEKLAR AKTFAFDKTGTITKGHLTVDHVFGTNGYTPDQVLQLAAGAEQQSNHILARSLVAAIPDKI PIAKNVKETTAEGVSATIDNQLVKVGKAEFVSTDPIKKIDQTTVYVSVNDTYAGYVSFSD ELRPEAKGVMTRLHQLGVKQIMMISGDRQPIAQQIADKVGIDKVYAEKLPKEKIAVLDQL DANDRPVCMVGDGVNDAPSLAAADVGIAMGAHGSTAASESADAVVLKDDLSLVSKAVAIS KETMSVARQSVLIGIAICLILMIIASFGVIPAIIGALFQEVVDTVTILWALRARIDKQDN VHSDPGTGKKQALNVQAVIESICSIFWNSKWL >gi|238617817|gb|GG669604.1| GENE 567 595292 - 595540 305 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508417|ref|ZP_03938466.1| ## NR: gi|227508417|ref|ZP_03938466.1| hypothetical protein HMPREF0496_0580 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0580 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 82 1 82 82 132 100.0 1e-29 MTIKEAIKFAQKRGISADQNLISRWIRDDKIQTTGSLKDRTLNIDQKSFGEFLDKNGESI EKIQAEMQKELMKKVGFAGSGL >gi|238617817|gb|GG669604.1| GENE 568 595709 - 596149 290 146 aa, chain + ## HITS:1 COG:mlr4407 KEGG:ns NR:ns ## COG: mlr4407 COG0454 # Protein_GI_number: 13473716 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Mesorhizobium loti # 44 146 60 165 165 80 38.0 1e-15 MTQKYHFGGIDCVMIKVEFNKQLTLKELLGLYKTADFAQEKLDDDPKRLQMMLDHTQLLV TLRDDDRLIGMARCLTDFEYSCYLSEIVILPDYRGQGMEKRLLQSIHDYLGERVAVTLRA DPEAIGFYSEVGYQQVDHMFRIHREA >gi|238617817|gb|GG669604.1| GENE 569 596152 - 596547 335 131 aa, chain + ## HITS:1 COG:PM1553 KEGG:ns NR:ns ## COG: PM1553 COG0454 # Protein_GI_number: 15603418 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Pasteurella multocida # 1 127 1 129 130 119 45.0 2e-27 MIIYSATAVISPKQLADLFDDSGIKRPTADINRIKRMINNANLLYTAWDNDMLVGVARGF SDEAYCCYLSDLAVKKDYQKQGIGRKLVKKIHRDLGSTVSLVLAAAPSAVGYYPKIGFEQ IDSGFKRPRKY >gi|238617817|gb|GG669604.1| GENE 570 596578 - 596955 289 125 aa, chain + ## HITS:1 COG:no KEGG:cauri_0778 NR:ns ## KEGG: cauri_0778 # Name: not_defined # Def: hypothetical protein # Organism: C.aurimucosum # Pathway: not_defined # 2 123 3 115 118 67 31.0 2e-10 MNDIQINNNQLTVTITGMDKLWGFKNRLIIPLDHVSDMTIENRKQLNQDGKWRVVQFRTP GLGLPWKQVGTFYGNHKRSYLNVSGNEHILFVALTNEKYDYLFLTVSNPDELLSEYKRVK QKSIE >gi|238617817|gb|GG669604.1| GENE 571 597485 - 598207 319 240 aa, chain + ## HITS:1 COG:SA1598 KEGG:ns NR:ns ## COG: SA1598 COG1266 # Protein_GI_number: 15927354 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Staphylococcus aureus N315 # 139 235 102 197 211 60 39.0 4e-09 MQKERKTMNSADKKGLLNAKTNHQKERHYFKSTSIYHTLFYLIVSFLLYQIVSIPLPFGQ AIHGRSWAFMIFFILFIAITATVAIRFAFKSYQEVMTSSVRIAGRDVDFKQVFKVFAVSL IGIVLFSALSDLVVPTTENQTMLEQSINANTAVGFVLMVVIVSPILEELIFRGLFINLIF KDNLFWLPIIASAAVFALFHETANIPQYLIYFVMGMILGFAYMKTGRLLTSILLHVANNV >gi|238617817|gb|GG669604.1| GENE 572 598516 - 598737 158 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508423|ref|ZP_03938472.1| ## NR: gi|227508423|ref|ZP_03938472.1| hypothetical protein HMPREF0496_0586 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0586 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 73 1 73 73 107 100.0 3e-22 MLTKVAQRYRRLTIHYILLLLGIVEFVRLWEAGQLISINMLLLISGMALILIDGVITFFK IKQKRFPIHQFLG >gi|238617817|gb|GG669604.1| GENE 573 598865 - 599734 868 289 aa, chain - ## HITS:1 COG:ML0458 KEGG:ns NR:ns ## COG: ML0458 COG0667 # Protein_GI_number: 15827148 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Mycobacterium leprae # 6 285 20 296 301 278 47.0 9e-75 MTDLNAANSGTYEFDNHFKINRLGYGTMQLTGSGTWGPYKDPKQAEAVVVRATELGINFF DTADSYGPWFADRYLAAGLRKAANRDQIFISDKVGQTRQGPGIWTPHGEPNYLRQQVEVS MMTLGIDHEDLLFLHRIDSHFSVADQVGELKKMQDEGKIKHIGLSQVTVDQIREAQKYAQ IDAVENLYNVANHQDDDVVDYAESQHMAFVPWFPLNTGKLTGGDSPLSAIAKKYGVSEAQ IALAWLLKRSPNILPIPGTSSIQHLEDNVAAANVKLSDNDFEKLSHLSN >gi|238617817|gb|GG669604.1| GENE 574 599947 - 601488 1190 513 aa, chain + ## HITS:1 COG:sll1546 KEGG:ns NR:ns ## COG: sll1546 COG0248 # Protein_GI_number: 16332241 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Synechocystis # 6 505 14 528 540 116 24.0 1e-25 MAQKYFGAIMVNVSGVELLIVNLKTRKTIERVTKEINLSDDIYHDHRVQYEIVSKVAEAL TGFVQILHDYGVENYELWGSQALSQAINADFIADQLFMHTGLEIRWLSMSEEAYYRNQDL SLSFKDSKKVSHGIVYLVGITSGNTSITQFDDGKFVTSTNFALGPIKIAEDLQSLRQSAP NSIGVLNDYIDSKLNDFDMGKPASFVKKPDPTKIFLLGTSPIKSLVSHYEKDHSLMSIDV NAFEALVDDIVDASDQYLIEQLEVNEDSVPLILPELLLIRRVIQLTNAKEIRFSDSGIVD GLVNNEAVTLGYSKDDFTHQTITMAVNLADHYDVEPIHRDLVTRFAMHLFDQLKPLHMLG PRERVLLQVASILHDVGNYVGIHEHYIHSEYIIRHSDIIGLSRIERSIIAAVARYHSSTT PSEDLSHFSQISAENRRLIAKLAAILRLADALDDDRQQKIKKISVSIKTHSVVITVYSNA NLAYENWIFNSKSQFFKEAYGLKAVLKQRGVKD >gi|238617817|gb|GG669604.1| GENE 575 601488 - 603662 1657 724 aa, chain + ## HITS:1 COG:BH1392 KEGG:ns NR:ns ## COG: BH1392 COG0855 # Protein_GI_number: 15613955 # Func_class: P Inorganic ion transport and metabolism # Function: Polyphosphate kinase # Organism: Bacillus halodurans # 2 688 10 703 705 624 47.0 1e-178 MAKIDYEDPRYYTNRELSWLDFNDRVLEEARDKNNPLLERVKFLGITQSNMDEFVMVRVA SLAKLIEVKWDGKDASGLSAEQQLKAVNDKAHEQLIKQYTTLNRIILPAIKQVGIRLLKV TDLSEEQYQYIKGYFHDELYPVLTPMADDSSRPFPFISNDTLNLSLRLSKKENDKSLYAT LQVPSIFPRVVKLPGADNDFILLEDIVKQFVDQLFINYDIQEVSTFRVIRDMDLDVAEED TSDLLKKVQQQLKLREHGQVIRLEVDSDISKKLRKRLVRELETDEDSVYEVNGPIDLTFL GKLASAVTGHDDLKYPPFKAYQAEALNSDHNIFEAIQKHDWLMQHPYDKFDSVVEFIRQA SIDKAVLAIKMTLYRVSGNSPIIKYLGRAAQNGKQVTVLVEVKARFDEENNVHWARQLER MGCHVIYGLVGLKTHSKLSLVVRREESGIRRYVHLGTGNYNDVTAHFYTDIGLLTANNDI GIDVTNIFNMLSGYSRPPYFHKLHISPKGIREFITDRLDQAIEYAKAGRPVHVRMKMNSL SDKDMITKMYEASHAGVQIDLIVRGICCLKTGIKGISDTIQVHSIVGRFLEHSRIYIFDF DGENQVYLSSADLMTRNLNRRVEQLFPVEQSDLTQRVLDIYSTMWEDNVKTRVLDADGTY KRVDRRGRAPLSSQDYFAKQATKLAEEQQSESRKPNSNQFQPMMSPENQPDPLSDEDQDG GNEE >gi|238617817|gb|GG669604.1| GENE 576 603662 - 604606 815 314 aa, chain + ## HITS:1 COG:CAC0621 KEGG:ns NR:ns ## COG: CAC0621 COG0248 # Protein_GI_number: 15893909 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Clostridium acetobutylicum # 1 303 1 302 499 197 35.0 3e-50 MENFAVIDLGSNSVRMTVSRINEDGTYDNVTQMKEYVRLSENMGPEKILQPDAIERTLAA LRSFKEVYSKLENLKMKAVATAAVRQATNQKEFLKKVKSEIGIKLEVISGAQEAYYDYVG VSETLPATNGVIIDTGGASAEIILIQNGKVANLISIPIGSVTLSSKFNLGDKILPEQLFK AVIFVNEIFQSVWWLKNGLNLPIIGLGGSNRTLAKINRRRNNFLDIDDIHGYQLSDTQVN DTFEDIVSHDLDGRKQVPGISKDRADIIVGGLIPVIFLMNYLDSDRITFSTSGLREGILF ERLHDVLKENVATK >gi|238617817|gb|GG669604.1| GENE 577 604737 - 606905 1131 722 aa, chain - ## HITS:1 COG:CAC2583 KEGG:ns NR:ns ## COG: CAC2583 COG1511 # Protein_GI_number: 15895843 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 1 722 1 709 709 416 35.0 1e-115 MGTIITLLIRDFKNIVHSRPVLITLIAFCIIPALYALLNIKASWDPYSPTNTSRLPIAVI NNDEGTIINNKSLNVGDQVIEELKKNHDINWIVTNDWQGNDGLDQGKYYALIDIPNDFSS RLATLTTGSPQKPTIIYKSNEKLNAAATILSEQAKDTLTQRIRTNFTKVTGREILEQMNL VGKKLNTKKPQLLQIRSSLLNAIATINKTKHYLNRLDNHSKDVQAYLKNINRNIPKISSQ INNLQAIINHGKSLNMATRRTIDSAKENLSSGLDGLQSQNSQVQSMLTNTSNTLTNNGSP SVLKTEAVQLNALDDAMVDKVNNQLRLLDVVNNLLPNNGATSLIKSLASVKDKIKDQQQT ITKLKTSANENGERVKMRSLLQQLIQENNRLSTIIDLATTTFSADTSQSLDQLSNTTDNS LDNDNEVVQALQSLTPKLRALQSAGNAASKLSSGRINKVNNRLDDVQQTLTSLDKKAGFI NSKNLTQLTNILEKNPDLSNLLSSPVTLQSKELYNLGKFGYAAMPFYAVLSIWVGILLLT AIITWRYKLPNDKHLPKPNLIQQYVGKFLLFLSFSFLQTTFTLFGEMLILGIRPNSLWAL LAIAYTTTFIFSLILFTLVFLFGNAGKVFGVLLLIVQIFGTGGIYPLQTIPHDLADLAPL LPFTYAIRGFREALAGPDWQTFSYLILILGIFGSIFLLLTPLKRFFIHSVRMLEEGMKRS KL >gi|238617817|gb|GG669604.1| GENE 578 606937 - 607608 368 223 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1808 NR:ns ## KEGG: Lbuc_1808 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 7 221 13 228 229 198 50.0 1e-49 MITVLCTILGICFLSVQSTSANTKSATVISTAKLIKAPYHAVSGYIYQSTSLTHKQHNAD HYPLTTFYATRSANIIRPNGNKAVYNYIKNGNNHIHGWIWRGYLVRVINVQKQKAAINKL VSLIDALTPFSHDKVTSLLKNVGRKESLNTLLSTLSNLSSSITDTSDIQKIETMYKLLKS DGQTLAAIFQNGLKKLYTGVIALHQFNNQVFKLAEGLLALIPD >gi|238617817|gb|GG669604.1| GENE 579 607971 - 610130 1319 719 aa, chain + ## HITS:1 COG:CAC2582 KEGG:ns NR:ns ## COG: CAC2582 COG1511 # Protein_GI_number: 15895842 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 3 719 6 721 722 451 37.0 1e-126 MANIRNVYHRDLRAIIKYRAAFITITVLCLLPSLYTLVNVRAIWNPYKPSAVDNISVAVV NKDSGTYLRGKQVNLGSQVVSNLRKNKQIGWKFTSKSHAAQGLRNGTYYAEIEIPTDFSQ NLTSIVTDTPQKAHLVYKTNTKNSPMGAKITAMAAKTLVTKIREKFIYVVNRTIFSYLNI VGRKASEHQSQILSLKDLIIMLGDSLNLTSNSLGAISDTSNTLAVAFTEFKPVINASQNV NLNDQSNTSGTGTSSLAKKSLNRSFSNLGHHLASLTAGTKQLRGLTNQLNHTVGSASLSD LDAKVSNLSLQVDLLDGQIRPLIELLQSVKKINQSRQISDLITSLTSVSQLAKAQKKQLN ALKKGIDQNGKLDMMGKQQINHRFSEMILKLNHSLAQYNHSVKAQLSDIGYNLMAAVGSS RDVLGSLKKVKQLNNQSLDTIIQGNQLVANTSGNLENQLASYKNDIMTMSNRLKLTSDNN IANIVTVLQSNPDLMGSALAQPFTVKSEDIYKVNSFGAAFAPTYIALSIWVGCTMLVAVL HTKAPKLAQFRGLSVREEYLGKLLTFGTLSLIQTLVILLSSMCLLHIHVASFFLLLMVGL MSSVTFTIIVYTMAALFGNLGKALIVMLMAVQLAGSGAMYPTQLNPLLFRIFQPLFPFAY SVGGFREAIGGANMGTVVVDFFVLMCMSLLGLAVGLSTKKPLKKYTDRLLNDFKKTGMG >gi|238617817|gb|GG669604.1| GENE 580 610247 - 610642 327 131 aa, chain - ## HITS:1 COG:lin2295 KEGG:ns NR:ns ## COG: lin2295 COG1393 # Protein_GI_number: 16801359 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 125 1 125 131 136 56.0 9e-33 MLNLYVAPSSASSRKARKWLVDHGIEFKERNISRIPLNADEIKRILRLTENGSEDIISTR SNAFQKLHVDLDNLTVSQLIDLMVKHPDLIRRPLIFNDEQLQVGFSEEDIRSFLPRSVRE ASLKQLMDRIS >gi|238617817|gb|GG669604.1| GENE 581 610892 - 612010 760 372 aa, chain + ## HITS:1 COG:L91456 KEGG:ns NR:ns ## COG: L91456 COG0436 # Protein_GI_number: 15674014 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Lactococcus lactis # 1 371 1 374 376 458 56.0 1e-129 MKIAGFGVEEWLNKWEKSATYDISQSTIASMTMNEALSLDGKDGEDFYKILDQQKMNYGW IEGSPDFKQEVSKLYQDISPDNILQTNGATGANHLALYALIEPGDHIISEYPSYQQLYDI PKSLGAHVDYWHIHEDQNWYPDIDELKSLMRPDTKMICLNNANNPTGTLLDETFLKQVVE LAKQSGAYVLVDEVYLPLVHSEEFVSIVDLYDKGIATNSLSKTYSMPGIRVGWTASNAAV ADLFRKYRDYTMICCGVFNDAMAVYILKHRDRVLNRNRKLVLNNLKIYKDWVASEPRASV VMPQAVSTSFPKLDIPEDIETFCIRLLKEQGVLLVPGTRFDMPGHVRLGYCADESTLREG LKRLSAFMRQYD >gi|238617817|gb|GG669604.1| GENE 582 612367 - 612462 80 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFRRNMYYTSGLAATLIALVIATKYLRSHAS >gi|238617817|gb|GG669604.1| GENE 583 612452 - 612577 107 41 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508434|ref|ZP_03938483.1| ## NR: gi|227508434|ref|ZP_03938483.1| hypothetical protein HMPREF0496_0597 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0597 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 41 1 41 41 72 100.0 1e-11 MQVSFYTYLFNLTPSDFLIALESRKGLLVNEETALAGRLGT >gi|238617817|gb|GG669604.1| GENE 584 612706 - 613410 621 234 aa, chain + ## HITS:1 COG:L36841 KEGG:ns NR:ns ## COG: L36841 COG3382 # Protein_GI_number: 15674160 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 234 1 235 235 211 45.0 1e-54 MSQFIVQPSFWNLFPDVKIAVITVHNLDNHEKGQVPPKMLDEANAGVADLIPDEPISANP LIHEWRQAFKKFKTKKGARFAVENLLKRAKKGNPVRSIDPLVDLYNAISLRTGFPIGALD LDKIKGGISLEVAKGGESFTAIGEDQPDPALPGEVIYRDDEAVTSRCWAWRDAKRVETTE DSNSILMYSECLKPEWRETHEHAMTELTENIEKYLGATTKTQYVSFDHPAVSFE >gi|238617817|gb|GG669604.1| GENE 585 613499 - 614389 831 296 aa, chain - ## HITS:1 COG:Cj1202 KEGG:ns NR:ns ## COG: Cj1202 COG0685 # Protein_GI_number: 15792526 # Func_class: E Amino acid transport and metabolism # Function: 5,10-methylenetetrahydrofolate reductase # Organism: Campylobacter jejuni # 13 283 4 277 282 259 46.0 4e-69 MSLTALFNDKTVFSLEVFPPKKDSILPTLQQLQSINPDFISVTLGAGGSDHYTGTVSIAD LIQNQLNIPAVAHVPGLYQTESQVLNLLDHLSEINVKNILALRGDKIPGKEPVGVFNHAN ELVSFVHKNRPDFSIASACYPDCHAEANGFIDDIAHLKEKVDAGADHLISQLFFDNQSFY DFKEKTEIAGINVPIEAGIMPCTNKKQIERITQITGVPLPKKFSAILDRYQDSKQAMKDA GIAFAVDQIIDLVSEGVDGIHLYTMNHADIAERIWDATKSVFEAANQKKTEKASNH >gi|238617817|gb|GG669604.1| GENE 586 614367 - 616652 1744 761 aa, chain - ## HITS:1 COG:SP0585 KEGG:ns NR:ns ## COG: SP0585 COG0620 # Protein_GI_number: 15900494 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Streptococcus pneumoniae TIGR4 # 1 754 1 749 749 890 57.0 0 MTTTIIGFPRIGHHRELKFATEHYWKNKINQEALQQTAYEIRKNHWQAQQDAGIDLIPVG DFSFFDGVLDTANLLNIVPSRYKELNLSELDEYFAQARGYQKGSETVKALPMKKWFNTNY HYIVPEFTKDTDIKLVGNKLFNEVNEALELGVNAKAVITGPYTLLKLSRFLDGTKPRDYV DSLITAYKQVIARLGEKGVKWVQIDEPALSFDVNTAEKSLFDDLYDGILADKRSTKILLQ NYFGDIRDIYNDVVSKDFDGIGLDFVEGKYNNKLLQQNGFPADKVLFAGVVNGKNIWRNH YENTIKFLNQLNTKADVVLSSSTSLLHVPYTAEDETKLPSDVKQHLAFALQKLDEIKELD NIYHDEADGKAALEKNDELFRSVKHPVNSAVHDRIASLTDADYTRLPSRADREKVQKKEF NLPVLPTTTIGSFPQTKDVRQNRSKLRKGEITREQYDKFNEDKIVRILRKQEEIGLDVLV HGEYERNDMVEYFGEKLDGFVFTQNGWVQSYGTRGVKPPIIWGDISRTAPITVKASVFAK NHTDKLIKGMLTGPVTIFNWSFPREDVTAKESVTQIALALQDEVLDLEKHDIKIIQIDEP ALRENLPLRKSNWYSEYLDWAVPAFRLVHSKVQASTQIHTHMCYSEFGDIIKAIDDLDAD VISFEASRADFTLIDQLVAANFQTEVGPGVYDIHSPRIPSEQEVEDLIKQLVHKLPIDKI WINPDCGLKTRTEEESFKSLQNIVDATKKVRSEINEPNSVI >gi|238617817|gb|GG669604.1| GENE 587 616815 - 617288 373 157 aa, chain - ## HITS:1 COG:SPy1642 KEGG:ns NR:ns ## COG: SPy1642 COG1854 # Protein_GI_number: 15675515 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Streptococcus pyogenes M1 GAS # 4 157 7 160 160 242 72.0 3e-64 MAKVESFTLDHTKVKAPYVRLITEETGKKGDVISNYDLRLVQPNTNAIPTAGLHTIEHLL AGLLRDRLDGVIDCSPFGCRTGFHLITWGEHSTTEVAKALKGSLEAIANDIEWKDVQGTD KYSCGNYRDHSLFSAKEWSKEILSQGISDKPFERHVI >gi|238617817|gb|GG669604.1| GENE 588 617769 - 618884 806 371 aa, chain - ## HITS:1 COG:L124252 KEGG:ns NR:ns ## COG: L124252 COG0620 # Protein_GI_number: 15672700 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Lactococcus lactis # 13 369 10 368 369 340 47.0 3e-93 MTVASKIKYPNRFDIVGSFLRPQQLKQARADFQDKKISRHALTEVENREIDRLVKKEVKL GLTDVTSGEFRRSWWHLDFLDGLNGAHFFTPDHGFIFNGQETRKGGIKITDKISYNPDHP FFKDFNYLKEIVPDGITPKQTIPSPSVLFPNKDAEIYDNFYDHNFDAFLNDEIKAYQETI QHFYDLGCRYLQIDDTSWGMWASFSKDTINPDLKPLCEAAVKAINAIADNKPDDLTLTMH VCRGNYDSNWAGAGAYDPVADYLAQLHIDGYFLEYDDERSGGFEPLKKIAANGRNQRIVL GLVTTKKPELEDQSLLINRIRLASQYVPLENLCLSPQCGFASTEEGNHLTENDQWNKLKL VIDTAKEVWSD >gi|238617817|gb|GG669604.1| GENE 589 619485 - 620243 223 252 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 8 247 4 238 242 90 29 2e-16 MSNRLEGKVAIVTGGTLGIGLAVAHRFVDEGAKVVITGRHADVGEKAAKSIGGPDVIRFI KQDASDEDGWVETWDQTEQAFGPVTTVVNNAGIAVNKSVENTTTEEWRKLLSVNLDGVFF GTRLGIQRMKNKNLGASIINMSSIEGFVGDPNLGAYNASKGAVRIMSKSAAVDCALKDYG VRVNTVHPGYIKTPLVDDLPGAEAAMSARTKTPMGHIGEPDDIAWICVYLASDESKFATG AEFTVDGGYTAQ >gi|238617817|gb|GG669604.1| GENE 590 620605 - 621975 1270 456 aa, chain + ## HITS:1 COG:PH1159 KEGG:ns NR:ns ## COG: PH1159 COG1457 # Protein_GI_number: 14590986 # Func_class: F Nucleotide transport and metabolism # Function: Purine-cytosine permease and related proteins # Organism: Pyrococcus horikoshii # 13 452 6 418 422 136 26.0 7e-32 MENKTFGRVVAIPKEHRHQSYWDMFATWVGANANNGTWYVGGVIAACGFATASTSLIIVG VITYLLLALSGYMGYQTGLPAMALTRASFGLKGSFLPSVINVVQFIGWAAVNTFIAATSI SYILHDILGWPVYGKPGGLKGLITGIVVMSILHLLSISMGERSVRIIERVGIILVFILVI WECIVVFQHVSFSEIISWRPPHDLQMTSGQAVDVLAAFNLAWVTAASDFTRFAKKKRSST HAPFWGANLGLIWFAMIGVISTIATAITLNHFDANNSDPSTIASKLGLGVLAMLVIIITS TTANAVNLMSAGSALTNMTKRLSLTISIVLVTLVAVVVTFIPIFYSTFLDVFTAFLDGIG MFLGPEIAIFLADYYIVTKQDYDIEHFAARDGKYWYTGGINWIAIGSWAVAVAAYAYIKT IPVLADSVGSTFISMIIAAAIYTVLSKMTHRNHSEA >gi|238617817|gb|GG669604.1| GENE 591 621977 - 622432 249 151 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0338 NR:ns ## KEGG: Lbuc_0338 # Name: not_defined # Def: pentapeptide repeat-containing protein # Organism: L.buchneri # Pathway: not_defined # 1 140 1 140 199 175 67.0 6e-43 MATIQKQTLGLDDIEPDNEYIDCTFSVSNQSIQISDVVFDHCNFEQSNFDQSDWNDVVFK GCNFLNASFHQSYLSNSQFIGGQLMGADFSLGTRLINSRFTDSNLRYANFSETKMENVQF NSSNLVETSFQAVTFKVNYSAINDRASGNTK >gi|238617817|gb|GG669604.1| GENE 592 622504 - 623664 691 386 aa, chain - ## HITS:1 COG:MA0258 KEGG:ns NR:ns ## COG: MA0258 COG0675 # Protein_GI_number: 20089156 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Methanosarcina acetivorans str.C2A # 4 377 1 357 370 194 33.0 3e-49 MTTVVKGVKLRLYPNQKQINQLWQLFGNDRFVWNQMLAMANKRYENNPKSQFVGEYDMNY LLKRFKQEYPFLKASDSTSLFVVNHNLTLAFNNLFQHRGGHPRFKSRHSAKQAYTGQSIC VVEAKRRLRLPKLGSIRTSKTSQLADAKIKRYTVSHDATGRYYLSLQVETEVLDLPKTHQ TVGLDMGVADLAITSSGVKYGTFNARWLEKQAMLWQSKFSRRKQRATVAMRQWNHRHKLS KLELNDYQNWQRAKINKARYQAKIANQRKDYLHKLTTDLVKNYDVIVIEDLKTKNLMRNH HLAKSIANASWSQFRIMLEYKCAWYGKQLVVVSARNTSRICSACGQNDGPKPLAIREWTC SECRAHHDRDINAAVNILNCGLKAIG >gi|238617817|gb|GG669604.1| GENE 593 623681 - 624118 199 145 aa, chain - ## HITS:1 COG:TM0777 KEGG:ns NR:ns ## COG: TM0777 COG1943 # Protein_GI_number: 15643540 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Thermotoga maritima # 14 139 7 125 129 103 42.0 8e-23 MVGMKDTNRLTYGRTSVYNLNYHLIWGTKYRHKVLTGHVEEIFKRLVNEIADQYGFEIAH LEIGKDDHVHLLVSAPPKLSVTNIVRWLKGITAFQLFRQCPELQTHDWQQKDRHLWSPGY YVESIGAVNEQAVAKYIDDQRKREK >gi|238617817|gb|GG669604.1| GENE 594 624269 - 624454 196 61 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0338 NR:ns ## KEGG: Lbuc_0338 # Name: not_defined # Def: pentapeptide repeat-containing protein # Organism: L.buchneri # Pathway: not_defined # 3 61 141 199 199 84 62.0 2e-15 MIFDQSDIDQIDFLDTKLKDVDLSQAKFDTLVVNPELIKGMIINPWQASLLIGLLGVVVK D >gi|238617817|gb|GG669604.1| GENE 595 624835 - 625527 303 230 aa, chain + ## HITS:1 COG:no KEGG:lhv_1954 NR:ns ## KEGG: lhv_1954 # Name: not_defined # Def: ABC transporter # Organism: L.helveticus # Pathway: ABC transporters [PATH:lhe02010] # 2 224 70 292 298 180 45.0 4e-44 MFLTIVVFNVFLNQGAGPYLWQTSILGLSFKLSFPAILYGSVMGLMLVEMLMAFALFNSI LTTNKLLAVFSPVSPRLALLVVLSINLVNTFNLQFKRLVLYQQTRNVDPFNGSIRQRLSV GMHFLGILLEGALVSGMERARSMDARGFGATKRSHYRIFKWQFSDSLFMTGSLIVFLVLI GFKAGSFGWTNSALKFNGSFSVADGWILCLLGLFLLIPIISEKVADLWTN >gi|238617817|gb|GG669604.1| GENE 596 625515 - 627176 196 553 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 299 508 5 214 305 80 28 3e-13 MDELIGIDHLTFTYPHATESTLENVNLKIFTDDFLLIAGDTGSGKTTLLSHLKKELMPNG HRSGHITFQHQDISTFTQLQSAQMVGFVSQNPRNQPVMATVIEELAFSLENIGCPSQEIG RRVAELSNYLGLDQWLHKRVDDLSGGQLQIVNLASVMILRPKVILLDEPTAQLDPLMTQN FMTILSRIHQELGMTIVMTEHNLAIPITMANRMVLISNRRIAVNDTPAVVMSQMFQKAQL QRFVPEIPALFLRNYPQAGQLPLSVSSGQRVIHAKNLQFESVNSDLKTAERPKEASIIVS LKNVSFTFDERQNVVDHLSLDIRQGEWLTIVGKNGSGKSTLLSLIGGLRKPQHGRINLVG KTVWKMQTTERIKRLSFLSQEPSLQFGNETVFKELMVQAKQLGITDAETRAQKTLENLRL TGLENKNPFDLSGGQQQLLGLAIAMIANPQLLVLDEPTNGLDPNTKHLIGEQLLSYQRRG GAIIMATHDMAFAAAFSGNCGFMFDGRLESILPRRRFFSGNFFFTTALNRLLRDQVPDAI LVSDVRAGKDGAK >gi|238617817|gb|GG669604.1| GENE 597 627230 - 627892 434 220 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0341 NR:ns ## KEGG: Lbuc_0341 # Name: not_defined # Def: putative metal ion ABC transporter # Organism: L.buchneri # Pathway: not_defined # 4 214 23 233 236 248 65.0 1e-64 MGIFLTLFQLLRGGHYLMFSFMILLCSMLMVYWRFEHEKLKTTTLMFMAILIALAVVGRL AFAWIPSAQAASFVIIMGAMSLGPELGFVVGATTALVSNLFFGQGPWTPWQMFAWGLMGF TAGLIAHTVIGKKVMPLVIFGAVWGFIFGWIMDAWSAMMYVHPLTFKTVLAYFLLSVKFD FYHSASNAVLLALFSKPWQRLFSRLDDKYNFLPTTNNEGK >gi|238617817|gb|GG669604.1| GENE 598 627900 - 628949 1036 349 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0342 NR:ns ## KEGG: Lbuc_0342 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 348 1 347 348 333 68.0 8e-90 MRNFKKVLMLSAVSLLTFGVVTPVATVNAASVKTATTGYQSTKVKASYSYAKKMLVKNKS GLSGKTTALFSRKAYPATGAAAGYSDFLLGLKGLGYHFTKTQRQRVAKNLVLNKKSTPAD LANAIMGLKAIGYNPQSFRLAGTKQKVNLVSALYKKSMTKQTVNVQSQALIAVSMSSKFK RPSTAKFSKTSLSNLIVKNQQSNNGWAYNNTAAAVDSDTTAMAVVSLARGKAGSSTVQSA LQKGQSYLKGAVYDNGAYGYTYNGKNMPNANSTAEAIIAFSTKRNTLKYANSAFKDGQTA SPLRAMLGYVNKTGSIKGAASQTLGVGQVNLASAAYRQAQKKHSVYSLN >gi|238617817|gb|GG669604.1| GENE 599 628973 - 629722 583 249 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0343 NR:ns ## KEGG: Lbuc_0343 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 247 1 232 233 159 49.0 2e-37 MKKIIGILIAVVLVFGLAFGIREVVAQHAQNQSRTAQLNRSSSQPKRQSGSTKSQSSSTK AKPKTDKKKKQAKGKSLSAKETAGNKVSGTRTASSNRHHVDKNRVSVKTTRPSSAKSPVA KRPTSKQKQAKASTGGHHKTAKVTQAATVGKAYIKVSGYKKQLYAGVQKITGKSTAFSLL MKTRLKVTYTSNPAIYVSAINGLKENDVKVGSGWMYSVNGKYVDKSAGDKKIKAGDKVHW YFSVDGYHP >gi|238617817|gb|GG669604.1| GENE 600 630096 - 632729 2236 877 aa, chain + ## HITS:1 COG:lin1682 KEGG:ns NR:ns ## COG: lin1682 COG1048 # Protein_GI_number: 16800750 # Func_class: C Energy production and conversion # Function: Aconitase A # Organism: Listeria innocua # 6 867 9 898 900 1000 54.0 0 MNKSYRQQLNLSGGSYRFYNIDAYLRDHGQDVETLPYSIRILLEEALRHADREPEREQVL SAFNDWDHQHDKDIPHQPERVILQDFTGVPALVDLAAMRDAVAKRGGNVSSINPEVPVHL VIDHSVQVDHSGNDEAFSYNIQQEFKRNSERYTFLKWAQNSFENLTVIPPDTGIIHQVNL EYLADVIHAKQLTDGSYEAFPDTLVGTDSHTTMINGLGVLGWGVGGIEAESSMLGEATYM PMPKVVGVKLTGKLGEGITATDLALALTHLLREHNVVGKFVEFYGEGTQSLPLAYRATIA NMAPEYGATCGFFPIDQQTIDYLKLTNRSDKQIDLVENYAKANHLFYNEKAVRHYSEDES LDLASVQSSLAGPNRPQDTVYLKDMPKQFDDRREMPDYPVEVGGKQFNIRVGSLGIAAIT SCTNTSNPQVLLAAGLIAKKAVELGLKVPDYVKTSLAPGSRVVTQYLAASGLQAYLDKLG FNLVGYGCTTCIGNSGQLKEDLQTRLTKDPYPIAAVESGNRNFEGRVNPLIKDTYLASPP LVVIYALAGTCDIDLTTQPVGTSKNGSPVYLKDLWPKDVEVAQLSQKYLKPKEFQKNYQS ILNQNATWDALPAPESETYQWDDDSTYIASPPFFDNEAGSKHLTGLRVLAKLGDSITTDH ISPAGYIGSQTPAGRYLKSKGIAIKDFNSYGSRRGNHEVMMRGTLANIRLRNQLTPDKTG GFTRYLPTNEETTIFEAAQQYQADHTGLVVLAGKDYGMGSSRDWAAKGVKLLGVKAIIAE SFERIHRANLAMMGVVPLQYQPGQTAESLGLDGTETFSIDLDGKVAHVTAKKDGGQIKFD TIIRFDTPVDWTYYKDGGIMPMIVSNKATTKSTTSNG >gi|238617817|gb|GG669604.1| GENE 601 632754 - 633857 860 367 aa, chain + ## HITS:1 COG:lin1602 KEGG:ns NR:ns ## COG: lin1602 COG0372 # Protein_GI_number: 16800670 # Func_class: C Energy production and conversion # Function: Citrate synthase # Organism: Listeria innocua # 1 362 1 371 373 331 47.0 1e-90 MELPKGLAGVVVDQTKVSSTKNAILTYAGYPIKELKNAPFEEVVFLLWHTRLPNADELKD FRKLLVSQMALPYETVQLMARIAREPQHPMSILRTTVSLLGTTNDVERDDPPRILAKMLT AIAAIIRIRNDKPIKHARKNWGVVENFIYLFSGKRPTAEQVSMFNTVMVLHADHEFNAST FTARVVASTKSDYYSCLTAAVCALKGPLHGGANEQVFKMLETIRETGQDPVQYVERRITS GHKIMGFGHRVYKDGDPRAAILREIARKIAHETGNDPYFVLQEQIRDYMFEKTHLHPNVD YYTALIYHCFNLDRQTFTTMFAACRTAGWLAHIIEQQAEGCLIRPSSEYVGKTNRHYLAD KEENSID >gi|238617817|gb|GG669604.1| GENE 602 633871 - 635139 1110 422 aa, chain + ## HITS:1 COG:BS_citC KEGG:ns NR:ns ## COG: BS_citC COG0538 # Protein_GI_number: 16079965 # Func_class: C Energy production and conversion # Function: Isocitrate dehydrogenases # Organism: Bacillus subtilis # 1 406 9 416 423 499 58.0 1e-141 MNNGQLQVPNNPTIPFIEGDGIGPEIWKAAKTVFDAAVKKAYDGQKQVNWLPLLAGETAY KKTGQWLPDKTLATLREYLVGIKGPLTTPIGVGHRSINVTLRQKLDLYACFRPVTYYPGT PSPVVHPENVNIDVFRENTEDIYAGIESDVDTKDAEEWKSLLAKQDKLSKVRFPDTSAFA IKPISKQGSTRLVDAAIDYAFANNRHTLTLVHKGNIMKKTEGGFKKWGYEAAEKYGDKVF TWNQYNQIKADQGEKAADQAYQTARDEQKLIVNDVITDNFFQQALLYPEHFEVVATMNLN GDYISDALAAQVGGIGIAPGGNINYQTGHAIFEATHGTAPQFAGQNKLNPTSIILSGAMM FDYLGWDDVSNLIRIGIKRAIKSHHVTVDFAKTPDATVLSTSGFGEYVAQLIEEAPQKTE VN >gi|238617817|gb|GG669604.1| GENE 603 635225 - 635785 690 186 aa, chain - ## HITS:1 COG:CAC0687 KEGG:ns NR:ns ## COG: CAC0687 COG1045 # Protein_GI_number: 15893975 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Clostridium acetobutylicum # 1 178 1 182 186 159 47.0 3e-39 MFQTARSILKRDPAAHSLLEVLLTYPGIRALFWYRMAHFLAFHRLYTLAGLLSQHAAKVT GITISPEAQIGKRVFIDHGTGVVIGATAIIEDDVTILHGVTLGARRAVEGRRHPYVKRGA FIGANAQLLGAITIGSSSKIGAGAIVLKDVADQTTVVGNPARRVKKPEAKVISVTFTELN AGTKHK >gi|238617817|gb|GG669604.1| GENE 604 635751 - 636935 1081 394 aa, chain - ## HITS:1 COG:HP0106 KEGG:ns NR:ns ## COG: HP0106 COG0626 # Protein_GI_number: 15644736 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Helicobacter pylori 26695 # 1 378 1 379 380 466 58.0 1e-131 MEFDTKLIHGGISEDENTGAVSVPIYMASTFHQQKIGENKYEYSRSGNPTREAVEKLIAE LESGTAGFAFASGSAAIDTVFSMFSAGDHFVIGNDVYGGTFRLIDAVLKRFGMTFTVVDT RDLNAVEQAITPDTKAIYLETPTNPLLRVTDIQAVANIAKEHGILSIIDNTFSSPYVQRP LEQGVDIVLHSASKYLGGHSDVIAGLVVTKDEKLGEKIGYLQNAIGGILAPQESWLLQRG IKTLSLRMRAHLANAEAVFNYLSNQPLVSKIYYPGDPDNPDYEVAKKQMHGFGAMISFEL QDGLDPKQFVEQLHVITLAESLGALESLIEIPALMTHGSIPRDIRLKNGIKDELIRLSVG VEDQKDLLADLERGFNQLKGRKNNVSNSKVHSEA >gi|238617817|gb|GG669604.1| GENE 605 636973 - 637884 543 303 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 2 303 3 305 308 213 36 2e-53 MIINSVSQLIGHTPLIDLQIDVPNHSHIYAKLEMFNPGGSIKDRLGQYMIQDAINQGNVT EGLTTIIEPTAGNTGIGVALAAQQHHLPTILVVPEKFSFEKQQLMKALGAKLINTPSNQG IKGAIQRAYKLQEQTPNSFVPMQFENPANPDTYYHTLAPELIEDIDGPIDAFVAGAGSGG TFAGIARYLKEQNDNTQTVVVEPEGSILNGGPAHSHRTEGIGVEFVPPFFEKVQIDQTLT IPDSDAFNQVKEMAQHQGLFIGSSSGAALAASLKVASQLPENSTIVTVFPDSSERYMSEN IYD >gi|238617817|gb|GG669604.1| GENE 606 638457 - 639320 633 287 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0347 NR:ns ## KEGG: Lbuc_0347 # Name: not_defined # Def: helix-turn-helix domain-containing protein # Organism: L.buchneri # Pathway: not_defined # 1 283 1 283 285 340 61.0 4e-92 MNIQKFIARRKELGFSQSELAKGICTQATISKFENGGKMISTKILTQLCQRLGLSLSDIF PGPVDRDSKLLEKLHQAEFNLITMEYEDVAATLSDISMDQMDDDDTKMEYLFIKGYLFAL SDYPTSDAVFCFDQILNGLDEEHQTIFSQLAYVGLGIAYEHGKNFERADFYFSKMPQQLQ NQRMYGVDDIWKTLTMLFYTGNYYSYREDFVTGNMLLQSLIHMSSKRHVTFYVARAQFRL ARNFEGQHVKQAIINETIRDAYAFAKFNGNQKLISRIERYQNQYKTK >gi|238617817|gb|GG669604.1| GENE 607 639357 - 639941 229 194 aa, chain - ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 5 189 112 297 298 109 35.0 2e-24 MHQMPDKELSYAVIHHLSVMADPRFGVHSPKQYAVQLAHRQPNNMQLFYKKMVTNRHSIK TYQKMFKLLLNNRSGAVLYHCTHGKDRTGIATMLILSSLGVPKKAIFQNYLQSNQALRSF NKIEQHQIKRITHNRRTLLNLKRSQMASRSYLRAAYSAIDHQSGSVKNYLKHKMKLSNSA ISTLRKDYLTKHQP >gi|238617817|gb|GG669604.1| GENE 608 639961 - 640194 109 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508459|ref|ZP_03938508.1| ## NR: gi|227508459|ref|ZP_03938508.1| hypothetical protein HMPREF0496_0622 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0622 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 77 2 78 78 144 100.0 3e-33 MTINSVNQSQVYAKSRSIHGTPVQLHGTSNTFDLGGIKAKNGMTIKPNRLIRSDSLSKLT YKDKWRLDKQSHFTGCD >gi|238617817|gb|GG669604.1| GENE 609 640285 - 640875 351 196 aa, chain - ## HITS:1 COG:SMc00379 KEGG:ns NR:ns ## COG: SMc00379 COG2249 # Protein_GI_number: 15964052 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Sinorhizobium meliloti # 19 185 9 184 196 85 31.0 6e-17 MKTVIIFDHPYTLAASDNQPHFRSYSAALAKATINRLKEMNQEVDVIDLHADHFDPVMHQ NDLSNWRKKQSINSQVDQYFERLSSADHLIFIFPIWWEVMPAMTKGFIDKVFSKNRLVSA HPRIVLPKNPTIKFFTVSGTPTILYRLKYGNPIEKALSRGTFKKLGLKKVNWYNFNAEDQ SAAKREKALKTIGKYL >gi|238617817|gb|GG669604.1| GENE 610 640995 - 641459 385 154 aa, chain + ## HITS:1 COG:BS_yvnA KEGG:ns NR:ns ## COG: BS_yvnA COG1846 # Protein_GI_number: 16080558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 42 146 45 150 157 67 36.0 1e-11 MKKQKLLNDIQNELTIFRSKDVDQRILTVIKDSNVLPEPVIKNVTINDLHVIQAIGQEDV RISEIVSKLPLTQGAVSKIIAKLSKVNLIIKKHKPDNRKDTYVSLTDDGKKANRLHMEYH QKMNQKIQQLAMDFSKDELKTINDFLRNVNQMRE >gi|238617817|gb|GG669604.1| GENE 611 641648 - 643246 1462 532 aa, chain + ## HITS:1 COG:L91569 KEGG:ns NR:ns ## COG: L91569 COG1914 # Protein_GI_number: 15673064 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Lactococcus lactis # 2 307 1 306 314 452 78.0 1e-126 MVKDKAPKKQHLIHYANGPSLEEINGTIEVPKGRGFWKTLFMYSGPGALVAVGYMDPGNW STSITGGQNFEYLLMSVILMSSLIAMLLQYMAAKLGIVSQMDLAQAIRARTSKTLGYVLW ILTELAIMATDIAEVIGAAIALYLLFHIPLVYAVFITVFDVLLLLLLTKVGFRKIEAIVV CLILVILFIFVYEVALSNPDFGAIFKGLIPTGQTFSGTDHVNGSTPLTGALGIIGATVMP HNLYLHSAVSQTRKVDHSDQEDVARTVRFTTWDSNIQLSFAFVVNSLLLIMGVAVFKTGA VKDPSFFGLFQALSNSSMLSNGLLIAVAKSGILSVLFAVALLASGQNSTITGTLTGQVIM EGFIHMKMPLWLRRLVTRLISVIPVLICVAMTSGQTAIQQHEALNTLMNNSQVFLAFALP FSMLPLLMMTDNPKEMGDRFKNTMWVKILGWISVLGLTFLNMKGLPDNIASFFGNNPSAS ELSLAHTIAYVIIAGIILLLIWTIYDMWSSRNKMPKRFETTEEHYDESKSEN >gi|238617817|gb|GG669604.1| GENE 612 643276 - 643725 608 149 aa, chain + ## HITS:1 COG:SA1532 KEGG:ns NR:ns ## COG: SA1532 COG0589 # Protein_GI_number: 15927287 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Staphylococcus aureus N315 # 11 149 4 143 166 72 30.0 4e-13 MDNENSPHTKFKRILVGVDDSPDAQLAFRYAVSEARLSGASLVIASILENEEMNVYQALS KDYVHGERKELVAHLKEYRDLALRSGVKTVDTVVEEGDPGETIVKKVIPAVKADLLIVGS LSKKGVRKYFGSQAAYMAKYAPISVMVVR >gi|238617817|gb|GG669604.1| GENE 613 643872 - 645227 1113 451 aa, chain + ## HITS:1 COG:BS_ycnB KEGG:ns NR:ns ## COG: BS_ycnB COG0477 # Protein_GI_number: 16077452 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 7 415 11 420 472 207 33.0 3e-53 MELTEKSRKWFVATLLLGTFTMSISQSSLSTAYPTFMRYFNLPASTVAWLTTGFMLIMSV VMPLSPWLMDNFKFKPLYLTLLVNFVVGTLIVIFAPNFPIMMVGRLMEGFSVGVLFPSYQ SIILEITPQNKRGSVMGTVGLVMGSALAVGPIISGVILQVMNWQAIFAFFLVVLSVVFIL ALKTVVSPLKLKSTNFDFISVFMSLGIIGLLYFINEISHMTSGSYLNWIILGVSMILLYL FVRRQLRMPEPLLRLDILKIGNFDLGVALTSLSYMSLITVTIIMPLYYQQALRMTPFWSG MALVPAAALLSWLNRRSGQLADRIGFKPVITIGFGLFIVGWGMLLILSGLKSVWVAIICS MIIEAGNAFAMMPATTLGANSLTNELIPHGSSIIATLRQILGSTAIVLATVILGNGNFNA VFATFLVMEIAAMGLAMMIKDTTAERVAEAR >gi|238617817|gb|GG669604.1| GENE 614 645545 - 646966 1575 473 aa, chain + ## HITS:1 COG:SPy1067 KEGG:ns NR:ns ## COG: SPy1067 COG1012 # Protein_GI_number: 15675059 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 1 462 1 462 465 517 55.0 1e-146 MAYKTVNPYNNEVVKEYPNATEDQLQEALATGHDLYKTMRKQPISERAKILHNVAAKLRE HSDELAKACTVDMGKLYRESKGEVELVAIIADWFADHGEDLLKSEKIDTIATGEAGIRHQ STGVIMMVEPWNFPYYQIMRVFAPNFMVGNPMILKHAANTPTSAQMFADVVAEAGAPKGS LTNLFLSYDQVTEAIEDPRVQGVALTGSERGGTAVAGAAGKNLKKNTMELGGMDPFVVLG DADMDAVNDIAWRARLYNCGQVCTSSKRFIVMDNVYDEFLDSLKKHFAAVKPGDPMDPAT TLAPMNTEKAKNKLQSQLDDAIAHGAKVAYGNEHIDLPGQFFMPTILTDIDKDNPAFKTE LFGPIASVYKVHSEQEAIDIANDSPYGLGGIVFSGDADHGAEVAGQIETGMVFVNNFMAT LPELPFGGVKLSGYGREMSHIGQMAFVNEQLIVKTDKPDLGNLAGGLVATDPE >gi|238617817|gb|GG669604.1| GENE 615 647193 - 648029 500 278 aa, chain - ## HITS:1 COG:CAC2608 KEGG:ns NR:ns ## COG: CAC2608 COG2207 # Protein_GI_number: 15895866 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Clostridium acetobutylicum # 19 276 23 278 284 134 31.0 3e-31 MNIIDMPADGTINEDVVCAHNQSRYHDTPFHQHSNHYELYLFLAGNATFWTRASAYPMKR GYLVAIPNGHWHRAVTNDDSLYERIFLNIRTNLVKDFSTFDTDLSTCFKVDKSKEINILK LNETDLSEFVSLCDKLIAVLDQPTAFGNDIRERILLSDILLLINQVDNITNQPQNIIPAL LQNMIRFIDTNLANDLSLSAISQHFYLNQSYLNRYFKRYMGLSIHKYISESRINQAKILL KAGKSVTDACNQCGFGNYSNFIRAFTRYVGISPGKYKK >gi|238617817|gb|GG669604.1| GENE 616 648396 - 649991 1350 531 aa, chain + ## HITS:1 COG:YPO1226 KEGG:ns NR:ns ## COG: YPO1226 COG2211 # Protein_GI_number: 16121514 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Yersinia pestis # 35 516 1 474 498 258 30.0 3e-68 MDTNNKQSVVHDGWDEYANKRIYQSRGKVGIWRSLGFGAFSFFSISMQGLVGAWLMFFYT TFAGLSAGQGATIFLIGRVADAIVSLIMGNISDNVYKYKIGRKYGRRHLFILAAAPAVLI AITMWVAGMNFWYYLITYLIVTVLMSTLQIPWETLPNEMTKDFNARTKMSTTRMVLAGLG GMLTQFVPAQLFKYFPKSSPEPYILMQVIFSVATFFLILITYHTTWEHFVTKKEAKKLEA EALEENNGQKPNLKSELKNYFSTFKIKTFRLHMGIYLSSYFATILFSTVFVYYIVYVLRM STSVSGFLQSLSIVSIPVTIIAGFAVTKFTYRSLYIFGYSLILISAANWAFVALTRPAHM MVWLIVGMSFYEVGLYILYFAPWNVFPFIPDLDTLVTGKNRAGLFASVMTFINQISQGLA SVVAGYLLDFAHFRQSASGAVSQPQSATNMIIFIVSGGVGFMILLAMFFAARFHLSKKTF KVLAQELGRLQKGGSMKDVDPHTKAVCEDLTGVKYDSIDFWKKNDKPTIQK >gi|238617817|gb|GG669604.1| GENE 617 650093 - 650452 283 119 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0631 NR:ns ## KEGG: Lbuc_0631 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 6 116 4 114 116 134 58.0 2e-30 MAENGSNWKEALKSETTFKDFITNYFKEHQELSGSYDIPSYYEHYTVRLDSHDGLVITLI TGINQAGKNESTALPFKQTEKMSIEDFRKLILHKKFADQNMSLADVFQVVAGVPDSDDQ >gi|238617817|gb|GG669604.1| GENE 618 650502 - 652553 1446 683 aa, chain + ## HITS:1 COG:no KEGG:LC705_02793 NR:ns ## KEGG: LC705_02793 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 681 1 679 681 762 54.0 0 MAEKAFIISKKTIVKASDFRNPVLKNASMILQRDIEKVTTKDVDENRIELILDPQATVEG DAYRIAFVSADIVKLTAKTALGVMYGALAISREILGVDDFWYWMDKLPVTKDTIKWTNFD LHLPEFQTKYRGWFVNDELLIMGWEDHDSQRYVWQRIFETALRVGCNLIVPGTDINSQIN RQPAKEFGLMIAHHHAEPLGAKMFAREYPTLTASFIKYPDLFRKLWRDAIMEQKGTPTIY SLGFRGQGDKPFWLDDDSRKWDDHAIADVINGIIKEQYNMVKELDPGAPMALNVYGELTG LYNKGLIKVPNDIIEIWADSGYGKMVSRRQGLDNPRSPILEAANPEHRQRGIYYHVAFHD LQASNFLGLLSNSPAFVSSELMKVRQHHFDTLELINTGSIKPHILYLREVAKSWLTDYSA RNNETILKDYVTHYYAKKRDEVVQLYDQYWQAIVQYGPHTDETAGDEFAPYLIRRLIKAW VSGQDKLSDAGWVVGDAKLDKSLEKLDQLITPKLADWDTLLLQVRELLLTLDQEDSRRLY GDLYLSVINQARGLKAFHLVIEAYQEVSKAKKSDDYVKPFLVTDEAYRYLNEITIAEKTN PSTKWRDFYKNDGYNNVPLAVSQLEFLRHYLRTLGDSDDEDKWEHHFIKATAEARVMTLS NTRPAMSDDKLAEKLRERLIDHL >gi|238617817|gb|GG669604.1| GENE 619 652597 - 652839 225 80 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508470|ref|ZP_03938519.1| ## NR: gi|227508470|ref|ZP_03938519.1| hypothetical protein HMPREF0496_0633 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0633 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 80 1 80 80 113 100.0 5e-24 MSSKKIKINPDKFALAVVSGSTLTESDDVKASKVALQRYLSAYLLIEDYNNLEDKNSSIF NSQSVTEMMENMSKALQSKY >gi|238617817|gb|GG669604.1| GENE 620 652928 - 653824 872 298 aa, chain - ## HITS:1 COG:L178172 KEGG:ns NR:ns ## COG: L178172 COG1597 # Protein_GI_number: 15673719 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Lactococcus lactis # 1 296 1 303 304 179 34.0 8e-45 MQNYLIIYNGTAGKSDNETIAKKAQRMLHQAGKNVDLAATSSEKDAVKQAKASTSRYDCL VTIGGDGSINTACAGFLKAGQSIPLGIIPGGTVNNFARALKIPLNTDKAIQNLIDGSPAK VDLATIGDTPMVSSLTLGRLADISQNVKQAEKRKFGTMIYLFKGIKELFTNRSYKLKIDA DGTSETLRAQILLITTTNSVGGYVAFNPDATYDDDCLHVFLLKKFTLPKIMTYGAFFLSG NLKNARGVKYIKCQQIRIENLSSRKIKTRIDGDPAMALPITVKVKADFLKILLPKSLR >gi|238617817|gb|GG669604.1| GENE 621 653901 - 654377 262 158 aa, chain - ## HITS:1 COG:SP0740 KEGG:ns NR:ns ## COG: SP0740 COG0494 # Protein_GI_number: 15900635 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pneumoniae TIGR4 # 4 136 2 131 151 115 47.0 3e-26 MTYSRSEHVELVNMCMIYNPKTKEVLVEDKTDVTWKFGHTFPGGHVERNESLYDAMVREV YEETGLTITQLESCGTVEWFNQDPLYRRLGFLYKTSHFSGTLKQSSEGKIYWMPLADLNE NNTAESFMTFLKIFTEPTTVDATSKIMNGSLSIIPKEA >gi|238617817|gb|GG669604.1| GENE 622 654482 - 655867 1290 461 aa, chain - ## HITS:1 COG:L0236 KEGG:ns NR:ns ## COG: L0236 COG0004 # Protein_GI_number: 15673574 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Lactococcus lactis # 16 419 1 404 413 308 45.0 1e-83 MMLEFMTLNKKGSDVMNAANTSFMILSSILVLFMTPGLAFFYGGLVSKRNVVNTMLSVFV MTGVAIVLWIMVGYSLSFEGDIHGIVGTLDNFFMNGVKLGTLTATKIPTGIFSVFEMMFA IITPALFVGAVVGRIKFNFLLVFLILWSILIYYPMVHLVWSPNGLLAGLGTLDFAGGTVV HINAGITAFVLSAFLGKRIKFGDKPHTHYNLPWVLLGTAILWIGWYGFNAGSALGVDNIA AQATITTTMSTGTAMVTWMILDMIISGKPTLVGVCTGTLCGLVGITPACGFVTIAGSFWI GMFSTFASYFFVNYLKDRIGVDDALDAFGCHGVSGIVGSIFTGLFATKAVNPIVSHNGLF YGGGWHQLGIQVFATLVTIVFVSIAATIIIKVLGLIMPMRVDRKEEEIGLDKGEHGEEAD YTVDISNDMDAYQSDMNMYAKEFRGQMAGLNSPKTPGPRDH >gi|238617817|gb|GG669604.1| GENE 623 656078 - 656722 654 214 aa, chain - ## HITS:1 COG:L119013 KEGG:ns NR:ns ## COG: L119013 COG0702 # Protein_GI_number: 15673091 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 1 209 1 208 211 168 44.0 7e-42 MKIIVIGATGRVGKQVVSKLAENKSDQVLAGARKPESIEKGSNIKPFKIDLHDTKDNILK ALPEADALIFTAGSGGKDLLQVDLNGAVKVMIEAAKRGIDRFVMLSSKDSLTPDSFSGDN PSPLANYLISKHFADLWLIKNTTLDYTILQPTALTETPGSGKVSLGEYTKNENSIENVAD VLAEIVKDDHTIGKILPMSDGATPITDAVAEVKS >gi|238617817|gb|GG669604.1| GENE 624 656881 - 658791 1705 636 aa, chain + ## HITS:1 COG:L63697 KEGG:ns NR:ns ## COG: L63697 COG2217 # Protein_GI_number: 15673984 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 617 1 613 625 600 53.0 1e-171 MKFQRFINQHINQITLITAALIGIGLLGNITKIGWLYTWSFILASIISAVPIVLRAFSAL RFKTISIELLVSIAVVGAFIIGEYNESAIVTFLFLFGTFLENKTLAKTRHSIKDLTEMAP TTALVIGEHDQIEETDVDFVDTGDVVLVKTGAQVPVDGRIVSGSGHVNEASITGEAKLVS KTSGDSVYSGTILDNGTLKVQATKVGDDTTFGKIVELVENAQDTKSPAEKFIDRFATYYT PAVLIIAALVGIIFSDFRLAITVLVLGCPGALVIGAPVSNVAGIGNGAKHGVLVKGGDVM NTLSHVDTIIFDKTGTLTEGKTAVTHFHTYSDDEKGLLVAAAVESQSDHPLAKAVVDFVQ SKHLDFSYISVTSSNTIKGRGINALVNQERVLIGNQQLMADNRIELSTKQLDDLHAIQRQ GSSSVIVAVNHSVQTIVGISDVVRTGVKESLQQLKKMGVKKTVMLTGDNQLAAQAVAKQL QIDELHADLLPEQKVTFVKQFQNEGQKVAFVGDGINDSPSIATADIGIAMGSGTDVAVET SDVVLMSSGFDELVHAFGLAKKTVLNTKENIIIAVGTVVFLLVGLIAGYIYMASGMLVHE ASILVVIFNAMRLIHYQTKSPKIDVDQVTESRVKLS >gi|238617817|gb|GG669604.1| GENE 625 658821 - 659042 229 73 aa, chain + ## HITS:1 COG:L134080 KEGG:ns NR:ns ## COG: L134080 COG2608 # Protein_GI_number: 15674047 # Func_class: P Inorganic ion transport and metabolism # Function: Copper chaperone # Organism: Lactococcus lactis # 1 72 1 72 75 73 58.0 7e-14 MSKAILQLDALSCPSCMQKIQGALEKQAGVETVKVLFNAAKVKAEFDADRISADQLSNTV TDLGYEVKSMKVK >gi|238617817|gb|GG669604.1| GENE 626 659054 - 659602 665 182 aa, chain + ## HITS:1 COG:lin0942 KEGG:ns NR:ns ## COG: lin0942 COG0783 # Protein_GI_number: 16800011 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Listeria innocua # 32 173 15 156 156 60 30.0 2e-09 MTTQTPEKLYEAEVKQADLDHHTPTAGAMTGHIVSNLVVLADKLQQIKWYVKGMNAASLK QTIADLLQQAYRQKDTMGSVLIDEALLTPTTQKEFTEYAMLQENGRNKYQNADWLVDDLV HDYDTSNLFVTRAIKLAEKEDRPVLAQHLTTLLGENNHNIAFLQALLGKTPREGLDEEDD AD >gi|238617817|gb|GG669604.1| GENE 627 660034 - 660525 592 163 aa, chain + ## HITS:1 COG:BS_purE KEGG:ns NR:ns ## COG: BS_purE COG0041 # Protein_GI_number: 16077710 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Bacillus subtilis # 2 162 1 161 162 179 58.0 2e-45 MMANIVGVAMGSISDWPTMKLACQQLDNLEISYEKHVISAHRMPDELQAFGKSARNKGLK VIIAGAGGAAHLPGMIAANTTLPVIGVPIKTRTLNGVDSLLSIVQMPFGAPVATVSIGES GAKNAALLAAQILGVEDQSIQQKLLDLKHEQRVEAKNSEQQFD >gi|238617817|gb|GG669604.1| GENE 628 660506 - 661639 695 377 aa, chain + ## HITS:1 COG:lin1886 KEGG:ns NR:ns ## COG: lin1886 COG0026 # Protein_GI_number: 16800952 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Listeria innocua # 7 371 4 368 374 352 50.0 6e-97 MSSNSIKTLLPPATIGIVGGGQLGQMMALIAKSMGYKVGILDPTPQAPAGQVADFQIVAE YDDVDSLMELADKSDVLTYEFENVDEDALLKAKKVAELPQGVNLLHITGERLNEKNFLRQ AGIPVTNFAAVSDEASMTDAIKEVGYPAILKTVSGGYDGHGQMDINSPQDIEKAVELYGK SQCILEARQSFIAEASVMVTRDVNGKVITFPLVENRHKNHILHTTIAPGRFSKTIHQKAH DYAETIANKLDLYGVLGIELFVIDDKDLMVNELAPRPHNSGHFTIEACNISQFEAHIRSI CGLPIPQIVQEKPAVMRNLLGTDLTLARNLLKDHPEWHFHDYGKAEIRPQRKMGHVTVLG DDIDQLLKSIDMLKGEN >gi|238617817|gb|GG669604.1| GENE 629 661641 - 662381 777 246 aa, chain + ## HITS:1 COG:BS_purC KEGG:ns NR:ns ## COG: BS_purC COG0152 # Protein_GI_number: 16077713 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Bacillus subtilis # 6 245 2 241 241 229 47.0 3e-60 MTEIADIEKKDLLYKGKAKEMFTTNDPDIMWVHYMDQVTAFNGKKKVQMQGKGQTNCEIS SLIFTDLAKHGIENHFIKQLDANNQLVKRVKIIPLETVVRNFASGSFEKRYGVEHLMAFE KPVTEFFYKSDELDDPFINDFDAEALNVATEDQMKKIRDIALKVNDRLKEIFSEMNVDLV DFKVEFGMTSDGQLILADEISPDSCRLIDRTTKKSLDKDVFRKGLGALVPVYKELLGRLE KVEDVQ >gi|238617817|gb|GG669604.1| GENE 630 662381 - 662644 391 87 aa, chain + ## HITS:1 COG:BH0627 KEGG:ns NR:ns ## COG: BH0627 COG1828 # Protein_GI_number: 15613190 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component # Organism: Bacillus halodurans # 1 82 1 80 84 70 42.0 7e-13 MALVKVYVNYKKSILNPEAQAIQKALGRLGYDNVNDLKLGKYFEITVADDISRDDLNKEI NDICDKMLANYNMENYHYDITETEAAQ >gi|238617817|gb|GG669604.1| GENE 631 662641 - 663327 636 228 aa, chain + ## HITS:1 COG:lin1882 KEGG:ns NR:ns ## COG: lin1882 COG0047 # Protein_GI_number: 16800948 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain # Organism: Listeria innocua # 1 226 1 227 227 294 60.0 8e-80 MKFAILAFPGSNCEMDLYYAIQDIMNEEVELVSYKKNSLEGFDAVLIPGGFSYGDYLRSG AIARFSPIIPALQEFAKSGRPVLGICNGFQILTEAGLLPGSLQKNVSAKFICQTEPLVVN NAGSLFSSAFELAQIINLPIAHGDGNYYCDQETLKRLIANDQIIFKYRNNPNGSVANIAG ITNKAGNVLGMMPHPERAVEDILGSSDGVGIFQSIVNYVKSREVVAHG >gi|238617817|gb|GG669604.1| GENE 632 663320 - 665554 1872 744 aa, chain + ## HITS:1 COG:L173921 KEGG:ns NR:ns ## COG: L173921 COG0046 # Protein_GI_number: 15673512 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Lactococcus lactis # 8 744 2 739 739 878 59.0 0 MDKVMNQSVEATPEQIRDQKLYQSMGLSDHEYQLIKDDVLHRLPNYTEVGLFSGMWSEHC SYKNSKPVLKKFYTKGEHVVKGPGEGAGIIDIGDNQGVVFKAESHNHPSAVEPFQGATTG VGGILRDIFSMGARPIACLDSLRFSAPKTDEDRYFISQIVAGISSYGNCIGVPTVGGDTS FDDAYEHNPLVNVMCVGLMDLDKIEVGAAAGVGNSIVYVGAKTGRDGINGASFASFQFDS EHESQRSAVQVGDPFTEKLVMEACLDVINHHSDSLVGIQDMGAAGLVSSSAEMGSKAGGN GMVLDLDLVPQREADMTPFELMLSESQERMLLCVKAGHEDEVLTVFDDHGVDAVVIGHVT EGDHYQLLQHGNVVADVPVDSLASQAPVYHRESEVPAHLKDADTKQFVPEIKNPTATLKQ MLTQLTIASKESIYQTYDTQVQTNTVVAPGSDAAVVRVRHYDKALAMTTDVNGRYLYLNP RIGGQMAVAEAARNIVASGAVPLGITDCLNFGNPEKPDQFYELDQAVMGMSDACEKFNAP VISGNVSLNNEYDNVPIYPTPMVGMVGLIKGLKHVTTQDFKQAGDLVYVVGRTGNGFNGS QIQKMQTGKISGKLFDFDLDYEAQMQQLVIDAIQNDLVHSAHDISEGGLITAVAESTFGN QLGVDLTSDLPVDRFFSESQSRFIVSIASENQDAFEKLMGENADCLGKVTDNNHLFVSAA DGYFDMDVDDAFHLWKGALPCSLK >gi|238617817|gb|GG669604.1| GENE 633 665539 - 666984 1324 481 aa, chain + ## HITS:1 COG:SPy0026 KEGG:ns NR:ns ## COG: SPy0026 COG0034 # Protein_GI_number: 15674270 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 1 470 1 470 484 667 67.0 0 MQPEVKSLNEECGIFGVWGTPDAARLTYIGLFALQHRGQEGAGITVNNDGELRTKRGFGL LTDVFDSPNAVADLDGNAAIGHVRYSTAGSNLLENIQPLPFNFSDTQFALAHNGNLTNAI SIRKQLEDRGAIYHSSSDTENLMHLIRLSQAPDLDDQVKEALNIIKGGFAYLIITKDRLY AALDPNGFRPLVVGQLPNGAYVVCSETCALEAVGAKFKFDVQPGQLIKIDDTGITIDQYT DDTQLSICSMEFIYFARPDSDIYGVNVHSARKRMGEILAKEQPADADIVTGVPNSSLSAA MGYAEAAGLPYEMGLVKNQYSARTFIEPTQELREQGVNMKLSAVKGVVKGKRVVLVDDSI VRGTTSRRIVKLLKDAGAASVHLRIASPPLRYPCFYGIDIQHVSELIAANHTIEEMRQIF DADSLGFLSVESLIKAVNLKTTAPNKGLCVAYFDGKYPTPLYDYQREYDRDQAQLHAAKM G >gi|238617817|gb|GG669604.1| GENE 634 666997 - 668013 738 338 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149378138|ref|ZP_01895857.1| Ribosomal protein S7 [Marinobacter algicola DG893] # 4 326 10 335 354 288 47 4e-76 MDAYKKAGVDINAGYKLVDEIKQLSHNDALGAFGGMFPLSLGHYQNPVLVSGTDGVGTKL LIAIKAGIHDTIGVDLVAMCVNDVLAQGAKPLFFLDYLGTGHLNQAEAKAILTGVVDGVS QADAKLVGGETAEMPDMYQHGHYDLAGFTVGIADRDKLLKSDNLREGDVLLGLASNGLHS NGFSLVRDILFKQNHYSLDETLPGCQLDLKHELLRPTRIYVKSVLPLIEQGLVQSIAHIT GGGLIENVGRILPDHLDAAFNLNSWQIPAIMTNLQKIGHLSFDDMKQTFNLGLGMVLAIR PTDVDRVKAELEKAGETVYQVGKLVSGSKKVVIREDLL >gi|238617817|gb|GG669604.1| GENE 635 668010 - 668600 507 196 aa, chain + ## HITS:1 COG:SP0048 KEGG:ns NR:ns ## COG: SP0048 COG0299 # Protein_GI_number: 15899993 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Streptococcus pneumoniae TIGR4 # 5 190 1 179 181 204 52.0 7e-53 MKPDVKRIAIFASGEGTNFTALCESFKKEGLPINVALLVCDHRKANVLNRAKKENVPTFV INFKDYPDKAAAESVIARKLADEKIDFILLAGYMRIIGPTLLATYEGKIVNIHPALLPKF PGRHGIEDAYQAGVDETGVTIHWVDSGIDSGKVIAQRTVPVYKDDKLSELEQRIHATEHR LYPEVVKQLLERGEIS >gi|238617817|gb|GG669604.1| GENE 636 668600 - 670129 1478 509 aa, chain + ## HITS:1 COG:lin1877 KEGG:ns NR:ns ## COG: lin1877 COG0138 # Protein_GI_number: 16800943 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Listeria innocua # 3 509 2 509 509 575 59.0 1e-164 MARRALLSVSDKTNLVDFAKQLKDLDFEIVSTGGTKKALEAGGVDVTGVEEVTGFPEMLD GRVKTLHPKIHAGLLAKRDDPDHMKQLKDAGITPIDLVAVNLYPFRQTIEKPETTEAQAI EQIDIGGPSMLRAAAKNFAGVLTIVDPNDYQPVIDALKAHSDDNAFRKHLAAKVFRHTAA YDAIISNYLTEEEFPDQLTLTYEKQQSLRYGENSHQKAAFYRDPIPSKLSVITKQLHGKE LSFNNIKDANAALNMVSEFDDPCVVAMKHMNPCGVGTADNISQAWDEAYESDPMSIFGGI IAVNREIDAQTAEKMHKIFLEIIIAPSFTDEAFEILAKKKNIRLLQADLSHRDQPDRFET ISVSGGMLIQESDHQIDQIPDFKVVTKTQPTEQQLKALQFGQHIVKFVKSNAVVVTTDTK TLGVGMGQPNRIDSAKIAIQKAMPKDGYEHAIMASDAFFPMDDCVEYAAQHDIKAIIQPG GSIRDKDSIAMADKYGIAMVTTGVRHFRH >gi|238617817|gb|GG669604.1| GENE 637 670347 - 671591 1080 414 aa, chain + ## HITS:1 COG:L153005 KEGG:ns NR:ns ## COG: L153005 COG0151 # Protein_GI_number: 15673495 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Lactococcus lactis # 1 407 1 411 413 384 48.0 1e-106 MANVLVIGSGAREHTIAATFMKSPQVENVYCAPGNPGMKKDGIHLVAIDETDFQKLGDFA ESHQIDLAFVGPEVPLAMGAVDTLQKRGLKVFGPGQASACLESDKTFAKRFMKRNGIPTA DFETFTDYDKAAAYAESLSLPLVVKENGLAAGKGVTIVTQRADVNPLLRSELEKSGEILI EQYLEGEEFSLMLFVGGDKRVILPISQDHKKIHEGETGPNTGGMGAYSPVPHITDDVLQE TIKTVVDPTMAGLKNEGLEFAGTIYIGCMLTNDGIKVIEYNVRLGDPETQVLLPQLKSDF YQVIMDLVDHQLPDMQWQDSDYYLGVVVAAPGYPQAPQQDIPLPALPDNIFYAGVTSDND KLFSSGGRIFTIVDHAPTLQATQDKVYAELAKINLSDFYYRKDIGFRDLEKSRV >gi|238617817|gb|GG669604.1| GENE 638 671707 - 672096 459 129 aa, chain - ## HITS:1 COG:no KEGG:SPSINT_2261 NR:ns ## KEGG: SPSINT_2261 # Name: not_defined # Def: 4-oxalocrotonate tautomerase-like protein # Organism: S.pseudintermedius # Pathway: not_defined # 1 129 1 129 129 173 64.0 2e-42 MPLMRIDMLKGRTEDEIKQVLDISYHVMLKTFGAPNGDRYQIVTQHEPYEMPVLDTGLGI KRTDRVIIFNLVTRPRTTEQKQQFYQQLVDRLHEKLGMRKEDIVVSLVVNSDEDWSFGLG KAQFLTGDL >gi|238617817|gb|GG669604.1| GENE 639 672211 - 673104 620 297 aa, chain - ## HITS:1 COG:mll0601 KEGG:ns NR:ns ## COG: mll0601 COG0596 # Protein_GI_number: 13470803 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Mesorhizobium loti # 3 297 2 300 301 169 33.0 6e-42 MDTNTIKIQEGYMPFRGYKTYYRIIGEPSENKAPLLLIHGGPGSSHNYFELLDDYAATGR QLIMYDQVGCGKSSIPDDRSVYVKETWAEELVALRKYLHLDNIHMLGQSWGGMLEMFYLT NYDQSGIKSVMIDGSPASIKLWIQEQHRLIKYLSYEDRQAISEAERTGDFSGPKYLAAND RYMERYCWDDPDENSPEPLRRPTNGKKASLIAEGPNEFTENGTISDFDVTDQLKNIHVPV LVTNGTDDLCTPLIAKSVYDHIPNAKWHLFANSRHLALLDQHDEFIKVMDNWLNAHD >gi|238617817|gb|GG669604.1| GENE 640 673191 - 673628 298 145 aa, chain - ## HITS:1 COG:no KEGG:EF1089 NR:ns ## KEGG: EF1089 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 11 144 2 130 131 78 39.0 1e-13 MAQPTKLTHWFIYYWEFWSKAFIFNATATRSQYWIPWLINNVLFFGYGFITGQWQHFAKY GSVRLGLAPPNSLVHAVIILLVMTVLLIATIGQFTSRARRLHDLNLSNWLILLLIFPLAG NLVLFILNLMPSKTNTLWGMNQSDY >gi|238617817|gb|GG669604.1| GENE 641 673612 - 674007 291 131 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508492|ref|ZP_03938541.1| ## NR: gi|227508492|ref|ZP_03938541.1| hypothetical protein HMPREF0496_0655 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0655 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 131 1 131 131 224 100.0 2e-57 MKKIFSQLIFVIFALLLFTVFPFSANADTGHVRDSQKPSTISDSITMTISKQSAYSKPKR YHTSAKSHISLYKAHIFSHATKVTFKLIGFSKADTTYKITKVINAQGLNWYYLKGHGWII GGTHPSHGTTH >gi|238617817|gb|GG669604.1| GENE 642 674266 - 675321 929 351 aa, chain - ## HITS:1 COG:CAC1349 KEGG:ns NR:ns ## COG: CAC1349 COG2017 # Protein_GI_number: 15894628 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Clostridium acetobutylicum # 18 351 12 341 345 186 35.0 6e-47 MSNNQTVGTIDKFDDYQGHQIDKLTLSNANNVSISVITLGSTLYELNVPDKEGGVRNLVL NFEHSQDYFENPFYICMGIGRVGGRIADGQLVVDGKQTQLPQNEGTTTLHGGPDGFNTQI WQGEIGKQDGNDVIIMHHLQKSEDDGFPGDMDATITYSLSDDNVVSMNFSAKSSEDTVFN PTQHTYFNLGKTSDIMSHQLKLNAIQALKLDDKKIPTKDRIDVEGTPYDFRKSKSLGDAI NAMSNTKEKGFDDVFAVHPDAHNIIAELKDPDTNCSVAIESSRSGMILFTANSFTKDHMN FVRTNGVGHPHEGVAMEPMILPKPGQEKDFSEMTIKKDQSVSYAIKYHLSF >gi|238617817|gb|GG669604.1| GENE 643 676129 - 677370 1240 413 aa, chain - ## HITS:1 COG:SPy1340 KEGG:ns NR:ns ## COG: SPy1340 COG0477 # Protein_GI_number: 15675278 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pyogenes M1 GAS # 15 406 8 398 406 320 48.0 2e-87 MENTNTTVTHSRHFTKNQKWVIASTSSGFALENMDVLFLSFAMSSMISQLHLSGGAAGLI GSITNLGMLFGGVLFGLIGDRFGRVKTFTYTIFIFAFATAAMAFANNIALIYVLRFLAGI GAGGEYGVGISLIAESFHKNQIGKMTSIAAIGGQVGAILAAIAAAFIIPNLGWHALFLIG LVPVILTYFVRRHLTETTAFVEAKKEETESTTSAVFKFMFSSPKLAYQSFALMIMTTVQI AGYFGLMNWLPIIVQKQLGLNVSGSSLWMIATIIGMSLGMMTFGSILDFFGPRRAFGIFL VASAGMVYTITLAHSTLSLLIIGAIVGFFSNGMFGGYGAVISRLYPTEIRSTANNIIVNI GRAVGGFSSVVIGILMDNYSVAVVMGFLSVLYIISFTTMMTLPGLKKLAVKNS >gi|238617817|gb|GG669604.1| GENE 644 677489 - 677854 203 121 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0381 NR:ns ## KEGG: Lbuc_0381 # Name: not_defined # Def: PemK family protein # Organism: L.buchneri # Pathway: not_defined # 1 121 1 121 121 181 74.0 7e-45 MAKKSQKTNNYVPNQQDIIFIDFDPSISHEIRKRRPALVLSNQGYSRLTHLVVVSPITHA NNNALRKSGFLVRVMNKNIDGFVNPLQFYTYDFDNRNAEYVGLLDTPSFIKVKQTIIDIL N >gi|238617817|gb|GG669604.1| GENE 645 677829 - 678059 236 76 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0382 NR:ns ## KEGG: Lbuc_0382 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 76 1 76 76 120 82.0 2e-26 MSVKMRKVGNPNTLTVPNDIKPIAKEFDVFQGRDGVIVYVPKHKNPFHDETFIKSHNLKQ SEEFGGPLIGEEIPKD >gi|238617817|gb|GG669604.1| GENE 646 678405 - 679124 728 239 aa, chain + ## HITS:1 COG:lin1946 KEGG:ns NR:ns ## COG: lin1946 COG0284 # Protein_GI_number: 16801012 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Listeria innocua # 6 236 5 232 233 210 47.0 2e-54 MRGPLIVSLDVANREGLFKIINKFPTGEEMTVKIGMELFYGEGPEIVRSLLNKGFKVFLD LKLQDIPNTVKMGMMQIGRMGVTYTTVHALGGSEMIAAAKEGLELGSEEAGVPTPKLLAV TELTSITEDALKNEQNCRLDMVDQVVSLAKLAKKSGADGVITSPLEVSSLKKQVGDDFLY VTPGIRPANFPKDDQSRTATPKQAAEYGSSALVVGRPIIRSNDPVAAYHKMLEEWNYAN >gi|238617817|gb|GG669604.1| GENE 647 679114 - 679767 702 217 aa, chain + ## HITS:1 COG:BS_pyrE KEGG:ns NR:ns ## COG: BS_pyrE COG0461 # Protein_GI_number: 16078620 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Bacillus subtilis # 6 209 11 216 216 195 46.0 5e-50 MQTDKIIQSLIDNKIVSINLKKPFRYASGILSPIYTDFRLTISIPELRDMIADGLAELIR KNYPEATVIGGVATAGIPHASWVAQRLNLPLIYVRAKPKDHGAGKQIEGRIGKDDKVVLI DDLISTGGSVLGAVKAVRNEGVNVIGVASVFTYGMPDADKNFADAHTTLHPLLSYAELIS QGHKENKFSDEEYSRLSTWHKAPWDWTKREEQANAAK >gi|238617817|gb|GG669604.1| GENE 648 679754 - 680701 884 315 aa, chain + ## HITS:1 COG:YKL216w KEGG:ns NR:ns ## COG: YKL216w COG0167 # Protein_GI_number: 6322633 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Saccharomyces cerevisiae # 17 315 14 314 314 377 59.0 1e-104 MLQNKISLKANIGKYRFNNVLLNAAGIRCATTDELTKILRSTAGGCVTKSATPQPREGNE SPRMKATPLGCINSMGLPNHGLDYYLKFAEENQGKNDNQVILSIAGLSVDQNLEMLHQIQ DSSFDGLTELNLSCPNIKGESQIAYDFEAVRDILTKAFDFFTKDIGIKLPPYFDLHQFDQ IADVLNEFPIAYVNSINSIGNGLIVNPETESVVLKPKGGFGGLGGDYVKPTALANVRGLR LRLKPEIAIIGTGGIKSGRDVFEHILCGANVVQIGTAFGFEDVKIFDRISKELKEIMAEK GYTSLDDFRGKLKTL >gi|238617817|gb|GG669604.1| GENE 649 680924 - 681277 330 117 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508502|ref|ZP_03938551.1| ## NR: gi|227508502|ref|ZP_03938551.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 117 1 117 117 224 100.0 2e-57 MTMEDLAHHIIGIAQEKNLPITNLQLQKVMFFSLKDAIVNHRFSESALMRIYDKPFLVWR YGPVEKDIYDEYRIYGADPIIEPNKSNSDFESLNEKIISLLEEDPFELVQQSHDVTF >gi|238617817|gb|GG669604.1| GENE 650 681358 - 681981 212 207 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508503|ref|ZP_03938552.1| ## NR: gi|227508503|ref|ZP_03938552.1| hypothetical protein HMPREF0496_0666 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0666 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 207 19 225 225 403 100.0 1e-111 MRISREETLAYLDSQSEESKIIRGFLKQLESMVQNWVAGGHYQLNDSDLLFDTDFKKLLT TMQGIHTEFIPYSEVTRIIYNNNADGLDAFFMKLNQKIMENVKLEDSPEIANEYVVLIKS VEHMKLANKQMDNLYKKQQDKLNQQQEKINVLEKNISKTKKRYKKLNKMKGFVWGFHCYF RDFCRSYFYIVWRITDRISCSCPNGQW >gi|238617817|gb|GG669604.1| GENE 651 681968 - 682204 136 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508504|ref|ZP_03938553.1| ## NR: gi|227508504|ref|ZP_03938553.1| hypothetical protein HMPREF0496_0667 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0667 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 78 1 78 78 108 100.0 1e-22 MANGDRIYRIMISVSLLGIVLIGLLFFLLKAVATMSDKSISINDSKKLYDRYPFFMWSLT IMAGVFVLGLIVDFLSHI >gi|238617817|gb|GG669604.1| GENE 652 682306 - 684831 1938 841 aa, chain + ## HITS:1 COG:BH0714 KEGG:ns NR:ns ## COG: BH0714 COG0178 # Protein_GI_number: 15613277 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Bacillus halodurans # 18 832 13 818 820 482 34.0 1e-135 MADQAQPEQIQVIDGNVNNLKNISVNIPLHRFVAISGLSGSGKSSLAMGILYSEGARRYL DALATYTRRRISQVGRADVKEVRHIPSALALRQRPTVPGARSTVGTMTEIFNVLRLIYSR LGSPVCPNGHQVPPTIKIAEAMDKAGSEMGMITCPTCGVRFMAFGAEDFAFNSDGACKNC EGLGVTKQIDSETLIGDETKTIRDGAVAAWRTPGRNFMPIVAQAAGVRIDVPYNQLSDKE KETVLHGKQQKFAINIPSKNGRVFHMDHALYENAYNAIEDSMATTKSDIALKRLNRFYRF FTCPVCHGTRINPDRLGQLVAGKSIAEASQLPLGKLPAFVKEIKAWLPDNMRDLANNLTG ELLSQLQPLLDLGLDYLTMDRAGATLSTGELQRIQLGRTLRTQTTGVLYVLDEPSVGLHP DNVSGLIKIFHQLVDQGNSVVVVDHETSIIDAADWIIEIGPGSGEKGGTIIDQGTPNQIK ASRRSLIAPFLTGKGKLLTRQKSKDDVFADGTVELKINHRFNLNQVSAKFPINRLIAVTG FSGAGKTTLVLDGLLDAFKADFNHRKLPSYIDHFDPNRIKHIVSVDATPVGKNARSTVAT YTNIMDHLRKLFAALPEAKQKHYTPSYFSYNNKQGGCPTCGGTGEISLDIQYLPDMVETC PTCGGKRFNKQVLQVKWHGLSIADVLDDDVDQATELFKKNTAIGATLRVLQKMGLGYLHL GEDTPTLSGGEAQRLKLTSHMRRSQDNTLFIFDEPSVGLHPLDVHVLLKVFSQLIDQGAT VMMITHDLDLMANADYMIDMGPRGGDQGGRIVAEGKPEDLTKAPKSLTTNYLRSHFDNYR V >gi|238617817|gb|GG669604.1| GENE 653 684952 - 685911 830 319 aa, chain + ## HITS:1 COG:L179409 KEGG:ns NR:ns ## COG: L179409 COG1482 # Protein_GI_number: 15672751 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Lactococcus lactis # 7 316 4 312 315 288 46.0 1e-77 MEVKVAPLFLTPVLHSKMWGGTKLQDYGFKLPSDHTGEAWIISAHPHGLSKVSDGPFKGE TLDQLWKEEPALFGGHAQNEEFPLLVKILDAKENLSIQVHPADDYARAHGEKFGKAESWY ILSAAPGAKIYYGHTAKTKQGLQMAVDNGQINTILRTIPVKTGDFFYNPAGVLHALGSGI VALETQQNSDMTFRLYDFDRVDATTQKKRPLQVKDALAVTNVPHQDPHVVQATRAASFGM VTTLVNAKHFVVEKIQTTGKLSLNQIHNYMLQTVIDGQGDLIVNDVRYPVRKGMSYILPK KVSNYQLDGFMTVIASYAK >gi|238617817|gb|GG669604.1| GENE 654 686026 - 687951 1235 641 aa, chain - ## HITS:1 COG:SP0913 KEGG:ns NR:ns ## COG: SP0913 COG0577 # Protein_GI_number: 15900794 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 5 636 7 661 662 287 30.0 5e-77 MIQLKLALHNLVKSKNQSLPFIFSNSMWVIITYIFLSMIYNTNIKTNSYGTVANYILKLG LVFVILIAALSTFYAERLLSKQRMQELGLYSMLGLTKRHLRQIILLENSLFYMICIIIGS TLGMTFSKLAFMSLKSLLGASSLHQSFTLLPLLYVAVIFAGIFILIILFDFWGLRKVNPI NLWAKSSQPEKEPKSHILLAVLGIIILLIGYYISVTVRPTGAAFGQFIIAIMFVVVGSYL VFITASISLLKALKKNQNYYYKPNHFISVSNMLYRMKQNGAGLASISLLCTSILVALIAS VSLVAGQKNLINLWSPRDIQIVSKAPLSTTANQTIHRLANNYQITMSQPQTLIVTTPVMG ALSGNQFNSQFNTKTEYTLSSLDLKQYNHLQNTNYHLKNNEVLLYAPGSNYSQRHLTIRG RTFKVKPVQRFNGAFVYSHTIYKSIFIVAANKTIAKQLNPQPYIYAQGFNTHGTKRHQKQ FAKTVQKTLNIDPGNFTSKYIMRDLLKAMFGSLLFMGILISIVMICATTMIIYYKQVSEG YADKDHYHIMSKIGLSKKETKKAIQSQVLTVFTLPIIGAVLNLIFALPAIKSVLTIFSMY NLKILLIVSLLTISVLIISYMLIYLATTTMYRRIVENPSTD >gi|238617817|gb|GG669604.1| GENE 655 687951 - 688712 287 253 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 4 221 5 214 305 115 32 7e-24 MSLLNLKHIKKVFSVGNENEVQALKDVSFSVEKGDYVAIMGESGAGKSTLLNIIATLDQP TSGEIMLNGIDLSHLFENESSRFRREHLGFVFQSFNLLDTFSNRDNIYLPLVLSRKSHQF MDNKLQPLSKTLGIEQLLDRQPSEISGGQKQRVAIARALITDPSLLLADEPTGALDSNNS KKILNVFERINERGQTILMVTHSAQAASYAQRTLFIKDGKIYNELYRGDQSRSQYLQKII DSLTALENNEEVG >gi|238617817|gb|GG669604.1| GENE 656 690041 - 690253 174 70 aa, chain - ## HITS:1 COG:lin1856 KEGG:ns NR:ns ## COG: lin1856 COG0745 # Protein_GI_number: 16800923 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 68 1 68 225 72 47.0 2e-13 MQKIFIIEDDQTIRNEMVQSLKKWNFQASWVQDFQNIDSEIKQQSPDLIIMDITLPFYDG FYWTQKIRAS >gi|238617817|gb|GG669604.1| GENE 657 690363 - 690989 649 208 aa, chain - ## HITS:1 COG:MA0513 KEGG:ns NR:ns ## COG: MA0513 COG0110 # Protein_GI_number: 20089402 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Methanosarcina acetivorans str.C2A # 2 184 16 199 199 189 49.0 3e-48 MANGDLYDQTPELLEIRMKVRDLLYQYNRLNYRDLTGRYQLLSKIFKQIGSHCFVEIPFH IDYGLNTSLGENFFANNNLTILDAAPVTIGDNVLFAPNVGLYTAGHALDPKIRQRSGAEF AFPIHIGNNVWLGANVTVTPGATIGDNSVIGAGSVVTKDIPANVLAYGDPAKVVRQLGEI DRKYYAKHRPMPQKYLDAIKNHQPFKHI >gi|238617817|gb|GG669604.1| GENE 658 691116 - 692519 1322 467 aa, chain - ## HITS:1 COG:L140856 KEGG:ns NR:ns ## COG: L140856 COG0477 # Protein_GI_number: 15673485 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 11 438 1 433 433 494 61.0 1e-139 MQNNTESAPKIHKVSSAFVYFFGALGGLLFGYDTGVISGAILFIEKQLHLDSWQQGWVVS AVLLGAILGAAVIGPMSDRFGRRKLVLLSAIIFFIGALGSAFSPEFWTLILSRIILGMAV GAASALIPTYLAELSPADKRGSMSSLFQLMVMTGIFIAYVTNYSFSGFYTGWRWMLGFAA IPAALLFFGALVLPESPRFLVKENKVSEAKQILEIMNKHNTSVVDKELSDIKEQAAIKSG GWSELFGKLVRPALVIGVGLAIFQQVMGCNTVLYYAPTIFTDVGFGVSAALIAHIGIGIF NVIVTAVAVMIMDKIDRKKMLIGGAIGMGVSLFIMSFAMKFSGQSQAAAVICVIALTIYI AFFSATWGPVMWVMIGEVFPLNIRGLGNSFSSVINWTANMIVSLTFPPLLDFFGTGSLFI GYGVLCFVAIWFVHSKVFETRNRSLEDIEETLRKRSDQKVTEAERAK >gi|238617817|gb|GG669604.1| GENE 659 692914 - 694080 793 388 aa, chain + ## HITS:1 COG:SA0041 KEGG:ns NR:ns ## COG: SA0041 COG1940 # Protein_GI_number: 15925748 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Staphylococcus aureus N315 # 14 376 4 367 376 246 37.0 4e-65 MKTITNKDLMRRANSKLVLQEIFNNDYTTRAAISRQLGLNKSTVSSIYDELKEEQLVEEV GEGAASHVGGRKPTNIRIYANYGFTINFDISYHNLHFMANYLDGSVIEQAETTIYRKNIH EIVAIIEHQIDQYVDTVVSVKGLLGICLSIHGIVNEQQEITYSPFIDFEDVNLNERLSAK YHVPVVLENESNLTAVYVRDFMMKFDSKNLVAIGIHKGIGSGVIINNRLFRGFRGQAGEV GRTLTKNAQGQLTPIEQICSEDAIINRISDELGLTGLNRYKVVEMYREHNQNVVAAIDEF IQEISSLIYNSSMYFDTGAIYLGSPLMEAAPEIFDQVLIKVQQLSHSEIKLVRLTDSDKA TLLGACSVITHYALDLVGYPLNFFKTKN >gi|238617817|gb|GG669604.1| GENE 660 694174 - 694977 675 267 aa, chain - ## HITS:1 COG:lin2267 KEGG:ns NR:ns ## COG: lin2267 COG2207 # Protein_GI_number: 16801331 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Listeria innocua # 27 250 29 287 292 87 23.0 2e-17 MVLFQHFGLEAKPIFKHFDLSDFNYPPHLHRAFEIIFVKRGQLHVQIEKQTYSVNKQQFA VVFPNQIHGFNMLPNSTATIVLFSPEIIGAFNEQYHDLVPENPVIFDNHPLDFDGATNIF AIKGLLYTLCSKIVEQTTFIPQKTSEKLSIVHEIIDYINNHYTHECTLQLASTAIGYDYV YLSKLFQKTMDISFTKYLNRFRISKARQLLKNTDEPITQIAFNVGYANLRTFNRNFKLLN EISPADYRKTDQTTTYGKAIQENYISG >gi|238617817|gb|GG669604.1| GENE 661 695145 - 697064 1262 639 aa, chain + ## HITS:1 COG:no KEGG:Tthe_0363 NR:ns ## KEGG: Tthe_0363 # Name: not_defined # Def: parallel beta-helix repeat # Organism: T.thermosaccharolyticum # Pathway: not_defined # 4 639 3 637 638 642 48.0 0 MAIYHVAKNGTDDNVGTENQPFLTINHAAQIALPGDTVMVHQGVYREWVDPKNAGLNDRQ RITYQAVAGDHVVLKGSEVVKDWQPVTKGIWKTVVDNKLFGDYNPFAVKLDGDWLEQGND CHAGDLYVNHHSFYEAHSYEKMATADERKTVTDYVTGIRSADRHAARTKYRWFAEVSDQT TTIYANFHELDPKQALVEISVRKCCFYPRHTGINYVTLSGFEICQAATPWAPPTTEQIGM VGPHWAKGWQIKDNELHDAKCCAISIGCPKLGDDNAYNQRHDKPGYQYQLERIFNASRHG WAADTVGAHEIVHNTIYNCGQCAIVGNMGCIFSRIVDNRIFEIGTKYEFGGWEIAAIKFH APIDTEISQNKIDHCILGTWLDWEAQGTKIDRNLYHHNLRDLLIEMCHGPLLVVNNVFAS KRAIDEYAQGTAFINNLIAGQNTIQSVLNRATPYHLPHSTAIKGYAMVYGGDDRYYNNIF IKPKDESLVSGTSLYNGSPTTMRDYISQIEKRMPGDVELFETVRQPTYIDHNVYLQGAKR FSKEKSFVENAELNTHFEIKQNEDSVSMTFEMPSNLASAKAQPISADQLGKLRIVDAKFE SADSKPLQFNNDYFGNPFNDTGAMGPFAGLKPGTNHFQI >gi|238617817|gb|GG669604.1| GENE 662 697204 - 698511 1329 435 aa, chain + ## HITS:1 COG:CC2315 KEGG:ns NR:ns ## COG: CC2315 COG0477 # Protein_GI_number: 16126554 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Caulobacter vibrioides # 17 418 5 412 418 147 28.0 3e-35 MAQNSKSTPVWHDTVLDSEQPKAPIKIGIATGIGALLWLGPYLGVNAVLLPAKVEQIIPS QKAQVVALLASAAMIVATLANIVIGGFSDLTRSRWGRRTPWIIIGSVGSLITLAWFNMSG SVPMMVISWSCYQIFLNAIVAPLLAFLQDQVAPQHRGTISSIYAFGYVIGQYGGQVVGAQ FLGHVGTGILVMGFLTLLSGPVAAMIVREPSSKGMPKKSFTFNMFLQNFIFPLHNAKDFY LALFGKMMINTATTAIMGYQLYILSDYINLNTAGQQKYVSIISMILMVTAIVMSISAGPV SDKMHSRKVPVFIAALLVAVGVIFPAFTNASWSMLVYGLLAGLGMGIFFAVDQALNLEVL PNPQTAAKDLGILNLANTGSQILGPIVAAAIVTAAHGSYFGIFPVCAGLALVGGVLILFV NEHRDVQNQQEKAED >gi|238617817|gb|GG669604.1| GENE 663 698617 - 699945 1345 442 aa, chain + ## HITS:1 COG:CC1757 KEGG:ns NR:ns ## COG: CC1757 COG5520 # Protein_GI_number: 16126001 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: O-Glycosyl hydrolase # Organism: Caulobacter vibrioides # 35 441 64 469 469 163 28.0 6e-40 MSATQIESTQDTKLKETTLSTTDKKLHNNLEVGTEKRQEIWGFGQTFNELGTVALNNLSE EKRNEILDDLFTPKGMNYNICRIPVGASDYALNWYSADETPDDYDLADFSIERDKKYLLP YVKAAQKRNPDIVFSISPWSPPTWMKSHPVYNYGILKHDPKVQQAYADYFVKFCEAYEEE GVHISWIFPQNEPQRDQKFPSCYWTGEELRDFIKNYLGPTVEKSDLKDTKIWLGTINSPL EDTEMTKDETTDYPVITETVLSDPEAYKYVKGVTYQWAGKSVLQRTVQSFPELGYLQSES ECGNGDNTWTYGEYVFNLFRHYISNGVNGYMYWNSVLQGGSSTWGWLQNSMISVDTDKGE ATKNPEYYVMRHYAHYIQHGAHLLSYGGHAAGEATAYENPDGSIVVVMSNSMNHDRDITI DVKGQTYKASLKEHSFSTFVFD >gi|238617817|gb|GG669604.1| GENE 664 700109 - 702124 1826 671 aa, chain + ## HITS:1 COG:no KEGG:MPTP_1982 NR:ns ## KEGG: MPTP_1982 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 12 373 10 348 383 189 35.0 3e-46 MVKISHILGTAVAAVTLLFTFSVTSKADTKPAAIDPVTVYQAKNDGSGFLNGKNYGALSP RVIQLKHQANSADNGKLLMTFEQVITNKAGETGHPVFPIYESDDNGATWKQVGQVTETNN KDWGKLNCPQLYELPQTIGDMTKGTIVVAGDATPNDRSATDLELDKSTDGGKTWTYESTI AQSGGNFLYGDPVWEPYLMVYDNKLVCYYSDERDSSGLPAKSQAIVHQTTTDGKTWSPIV FDANPTKLTNKDQRPGMPIVTQMSNGEWVMTYEQFGGGSSGAKFSKDPLNFDQADPGTTI APSGAPYITTLNNGELAFNNNGNGGKVFIFKDKTSLLRGTYHPDATFTPKSGQAYNRQLL PLANGMLLVANGGGTGNTPNAIKVETLDASDTVQQGKVVIHYVDENGKQIKPDDTTTVGT VGTKYDVTDKTKSSITGYQLKGVTQGQNNLAGNFGADPIEITVTYTTSNSGSGSTVTPPA SSSSSSSSSSAVTSSSSSSTEASSSSNVTESSSSTTTPEASTTKKVTPFKIIAKKALYRY NSTTFSKANRIKGYAKKSITKAPVFKVVGTAKSANGALRYQLSDGSYVTAKAGYTVKLYL TKNVKALKVINAKGTWTYKTTKATKKNAVKHLKKGTIVKTKKIVKSGSTTKYQLTNGYYI TGSRQYVKAQF >gi|238617817|gb|GG669604.1| GENE 665 702235 - 702570 347 111 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1917 NR:ns ## KEGG: Lbuc_1917 # Name: not_defined # Def: cytidyltransferase-like domain-containing protein (EC:2.7.7.2) # Organism: L.buchneri # Pathway: not_defined # 5 110 171 275 276 69 34.0 5e-11 MDLKKIDEMIKAGDIMGANNLLGHRYETKGELIRAQINGRWIINLFDHQFKIPRAGDYTG FVKIADQERITSITVNRPGNQDSSAIVCVDLYDFNELPHRSTLTTSIEWIE >gi|238617817|gb|GG669604.1| GENE 666 702664 - 702903 201 79 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508519|ref|ZP_03938568.1| ## NR: gi|227508519|ref|ZP_03938568.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 79 1 79 79 155 100.0 1e-36 MGWVKRLALLIGTIVLAGRGRIDPFLGILYNYYKYDQKVNMNDDKYRPLTQAYEARMPEG TSPDYPAAGTLLFTRSSAN >gi|238617817|gb|GG669604.1| GENE 667 702977 - 705346 1788 789 aa, chain + ## HITS:1 COG:no KEGG:LVIS_0489 NR:ns ## KEGG: LVIS_0489 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 583 785 182 384 460 80 29.0 3e-13 MKKLLLISLAFLFSIFITLSVANPIADAEGLQEQTGSTIQVLSKPTLKQRQESGMKVVGG SFTPYKNGYVAGTLGDLMHRGDNIEITGTGYLRIRTELEFWYGIGKISMPEISAQTKDTK VQSVGEGYQYFSESSYNQSDDTPGIGYNDRFIWFSGTIKIGELEKISGYNAQYNIGVSDV SFNQVNNGTAVVYDTSDGILPAYSYKLISRGTGNDGYMDDQLVETRDRQFDTTGKYDSTT ADNGATAQDVVYRGEDEETANQWWTFIYAGDQDGNHYYRILNDLTGKYLSVANNNAGYNV ITEDENASSQSQLWAINKADNETNPDLSNHISTAIYDTFQNKASGLYLTDDGSSLSQQPL GKVGTALFMPRYTKGYTDHDGDGFPDSLLPAFRLDSTKYKRYEAESLDSSKYAAQGTDAE RNWRGNEDVSGTRFVRLSQTNPTLTETVNVPQTGPYDVLIHYGSNSDVSSPVYVKAQLAD GKEYYVANDGKTSAVSGDNLDDSLAQQTLVFTNNSSYPSGAHNSTSHKFLLWFSDGSIKQ TQLYLHAGKNEVTVTDPSGSTLDLDYLDVALKSSDPVTDTNTGTSTGTGTSSTTSTAVPN NTDPAQTTNSNSSSNSADGTTGSEPVTTSQSSSSRPTTKKASVSKKSKFSAFTGYAKHLI YEYNSTTFSKKSRKSKVLKHASFKVIGVKKSASGLNRYKLSNGRYITSNDKFVDKLYLTK KKNQAKVINKHGLYEYKKIAFSKGNRVCYLHKGTDIAVKKIVHFKLTTRLQLTNGHYVTG SKLFVKNIQ >gi|238617817|gb|GG669604.1| GENE 668 705571 - 707493 1599 640 aa, chain + ## HITS:1 COG:no KEGG:Pmob_0233 NR:ns ## KEGG: Pmob_0233 # Name: not_defined # Def: putative outer membrane protein # Organism: P.mobilis # Pathway: not_defined # 4 640 3 638 638 733 55.0 0 MTTYYVSKNGSDQNDGHKDSPFLTIQKAADVAIAGDTVTVHEGVYREWVKPLNPGLSSRR RIVYQAAENEHVVIKGSEVIEHWEEVGDHIWKTSVDNQLFGDFNPFAKAVWGDWLTSIDH TNHLGAVYIDGKAMFEAHSREALEHPKQRQTVENFFTHEQLPDFYSDDTKYLWYADVQEN RTVIYANFQGIDPNTALTEINVRPCCFFPERTGINYITVRNFEMAQTATQWAPPTGEQQG LIGPHWSKGWIIEDNVIHDSKCSGISLGKELSTGDSYYYRRFDKPGYTYQIETVFAGEHN GWSKDNVGSHIIRRNHIYNCGQTGIVGHMGCAFSQIYDNDIHDIATRHEFEGWEIAGIKL HAAIDTQIRHNRIYRCSLGTWLDWQAQGTRVRQNIYYHNGMDFFVEVSHGPFLIENNIFA SKYALRHLSDGGAYVNNIIAGDMLVDDVRNRSTPYHLPHSTTIKGMTPVYGGDDRYFNNI FISREKAKHCGTDMYDGHPQSLQAYIDDVQTQAPTDLEGYEAKKTPVYINNNAYFNGAKN YADEANKLSDPSFDSKFAIEERGRSLYLTINLPEAYTVFKVPAKVTDTLPHVRLVDADFE QPDGSPLKINTDLLGRVADDHVLTGPIQSLNSGENHIKIW >gi|238617817|gb|GG669604.1| GENE 669 707525 - 707740 71 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508522|ref|ZP_03938571.1| ## NR: gi|227508522|ref|ZP_03938571.1| hypothetical protein HMPREF0496_0685 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0685 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 71 1 71 71 130 100.0 2e-29 MVRARHHFYKHLKNSFLMLHKKSQENRLERFSWDFTIIKSIYQLNFPTRVVRTLLPFLEK PADKVVILEWG >gi|238617817|gb|GG669604.1| GENE 670 707740 - 708534 720 264 aa, chain - ## HITS:1 COG:Cgl2018 KEGG:ns NR:ns ## COG: Cgl2018 COG0730 # Protein_GI_number: 19553268 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Corynebacterium glutamicum # 16 249 17 257 269 96 33.0 6e-20 MCASTLILTFIFLIIAGFAAGLLASVAGLASLVSYPALLAVGLPPVIANVTNTTALIFSG IGATASSLKELRGHWKKLSIFIVLSLIGSIGGSILLLVAPASSFEKVVPFFILFAGILLF LSGRKKDVSTSKLKEAHSSPEKKWWVSLISLIGIILVGAYTGYFGAAGGVIFLAILSVIT DDRFAVVNAMKNVIAFAGNLIATIIFIFKSHIDWLLVIPLGFGLLIGGYTGPIIVRHANI HLLRALISIAAFGLAAYLFVTAYF >gi|238617817|gb|GG669604.1| GENE 671 708675 - 709673 718 332 aa, chain - ## HITS:1 COG:L136332 KEGG:ns NR:ns ## COG: L136332 COG2957 # Protein_GI_number: 15673679 # Func_class: E Amino acid transport and metabolism # Function: Peptidylarginine deiminase and related enzymes # Organism: Lactococcus lactis # 34 324 24 363 366 69 22.0 8e-12 MRKRTGILAIMIFTGCLLAGTSKLSVTQTAAANQPTIYTALPKPSDTYYRPFNKALRHFD SQLAKQDPNNVLTITKQPLAHRTSNFTYDDIWLRDVAPVITTKMVKFRYSPNYLKKADRH YLDQRFRTWLNREKFNYQTSDLVLDGGNLIWNNSDTVILTTHVFTDNPNWSRTEIIKELK TKLAVNHVIFIPTEPGDVLGHADGMVKFITARKLYISDFSGNQKLVKKIEQLIRKQLPSA KFVLLPSAYTSKGQYDTKIASAKGLYVNMLETPKTIYVPHYGLKTDAKVLKIIKQQTTKK VVPIDVAQISTTGGSVHCLTWDVPAKFKPDKS >gi|238617817|gb|GG669604.1| GENE 672 709903 - 711048 751 381 aa, chain - ## HITS:1 COG:AGl1145 KEGG:ns NR:ns ## COG: AGl1145 COG2814 # Protein_GI_number: 15890690 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2 361 53 413 431 152 29.0 1e-36 MLGCNEFIVVGILSDLSKQFQVPISIMGYLVTIFATVYAVSTPFVTVLTSRFSRYKTLLS LMIVFLIGNTLSGLSTSYLFMVVSRIITATTAGSIISLVMTFASTIAPRNKRASLVSWIF AGFSIASVFGVPIGVAISTSYNWRYTFFSISVITILTFILLIFILPRKVKQTQSSIKNQL TLLLDPRIYIGIVLVLFTAATMYAYYTYIRPLLTTSMGFSITSLNWLLFIIGIMSILSNR LSGAIAEKPNPLRTMPKFYVADIILLLLMPFGLKNKITGMAIILILTLIVTVLNSPIQLH FLNIAESDYPQSLVLASSLSSIFFNFGISLGSATASSMVGIVGLDKISVGAAVYAAISLL FVYLLNKAIKTKQKSATQLSK >gi|238617817|gb|GG669604.1| GENE 673 711293 - 712690 1056 465 aa, chain - ## HITS:1 COG:SPy1654 KEGG:ns NR:ns ## COG: SPy1654 COG1113 # Protein_GI_number: 15675525 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Streptococcus pyogenes M1 GAS # 2 448 5 451 459 455 53.0 1e-127 MQKSHITENADGTKRSLSNRNVQMIAIGGTIGTGLFLGSGTTISKTGPSILLVYLVLGIF FFLMMRAIGEMLYSDPSQHTFVSFITRYLGPTVGHFTGWTYWLGLTFCGMAELSAISTYT QFWFPNIPAWLIQVVFLGVLVSVNLIAAKIFGEAEFWFALIKIIAILALIVTGIFMMTSH SLTPLGHASVQNLFHHFSMFPHGGLSFISAFPMAFFAFQGIEFVSITIGEAKTPHRIIKK AVNETLLKILIFYFGAMIVIMGIIPWTHLTPQSSPFVQVFKLAGLPAAAAFINFVVLTSA SSSLNSFIFSAGRHFYQLATELPKESWMHQHFAKISKSGVPAAAIKISALLLLVTPLLSL TSATGAVFTIVAGSSNDMYIIVYALVMIAHRKYRESSDFLADGFKMPWYQFTSPLTIAFF AIIFMTLFFIPQDIIGALGAIAWTVIFGGITYLHQRSMVSANADN >gi|238617817|gb|GG669604.1| GENE 674 713180 - 713629 271 149 aa, chain - ## HITS:1 COG:SMc00425 KEGG:ns NR:ns ## COG: SMc00425 COG1522 # Protein_GI_number: 15964097 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Sinorhizobium meliloti # 1 139 2 140 145 92 34.0 2e-19 MDKLDRKILNIVQQDGRVSIKSIAEKCFISAPSASVRLQNLENHGFITGYTATVNYEKLG YLIKAFVRIDVSYKELPKFVKFISKVPNVVECNFITGDASVQLKVFYKTMIELNRFNASL KEFGNTHTNVAFTTNIGPRPLKLPEKKSD >gi|238617817|gb|GG669604.1| GENE 675 713849 - 715186 1273 445 aa, chain + ## HITS:1 COG:BH2757 KEGG:ns NR:ns ## COG: BH2757 COG2115 # Protein_GI_number: 15615320 # Func_class: G Carbohydrate transport and metabolism # Function: Xylose isomerase # Organism: Bacillus halodurans # 1 442 1 436 440 510 56.0 1e-144 MAYWNVDKIKYVGTKDKKSGLGFQYYNPDEMIGGKKMRDWLRFAVAYWHTFDQRLVDPFG DGTAIRPYDKYTDPMDLALAKIDAAFEFYDKLGVDFLCFHDRDLAPEGDTLRETNKNLDK VVDKIVDYQKTSGMKVLWNTSNLFTNPRFVEGAGTSPYADIFAYSAAQLKHSLEIGKRVG SENYVFWGGREGYESLWNTDMKREQEHAAKLFHMAKDYANEIGFDAQMLLEPKPKEPTTH QYDFDAATTIAFMKEYGLDKDFKLNLEGNHANLAGHTYQHEIRVAREAGLLGSLDANQGD KLIGWDIDEYPSNLYETTAAMTEVVENGSIGPRGGLNFDAKPRRSSFEPNDLFYGHIVGM DSFAAGLRVAVAMKEDGVLDNIVKNRYSSFDSGIGAEVESGKATMKELEDYSLDKTQKQL RDATHSDHLEEIKDTINHYIIQTLK >gi|238617817|gb|GG669604.1| GENE 676 717027 - 718250 1151 407 aa, chain + ## HITS:1 COG:L129379 KEGG:ns NR:ns ## COG: L129379 COG0477 # Protein_GI_number: 15672108 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 9 388 5 384 398 337 48.0 4e-92 MAKSKTPQWKKNLWALWFGNFATGAGASMALPFLPLFISEFGNFPKWELTLYSGLAFSSV FLSQAIVSPMWGNLADRTGRKPMLLRASIGMTISATLCGLAPNVWTLILIRFIQGTFSGY INNAYALMASEVPQEESGHTMGTLTTGNVGGNLIGPIIGGYLSGVFGYRLPFYIFGFMMF LAAVSTWLFVKEDFKPVKKSAKLGIKDAFAGIQKKWVVSAMIVSSMLIMAATMSINPIIS LFVRELMHGHGNVAFISGVVAALPGIATILTAPTLGKLGDHIGPEKILLAGLIFSAVVFF PMTFVTTVLMLGILRFLIGIANAALMPITQTVMTLETPASSVSRIFSYNQSAQAVGAVIG PMMASGVAGILDYRYVFLMTTLLVLINLGVVLIAYRKDRGKRIAPID >gi|238617817|gb|GG669604.1| GENE 677 718640 - 719101 477 153 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2217 NR:ns ## KEGG: Lbuc_2217 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 153 1 153 153 169 59.0 3e-41 MTLFLKITDFLLLYLLIALWVGDFFSMKMQGKSSEYVSKLLRNDAGRLKIAIKDPVHMSE QTQAFISKKLVSINRWFWLANKNVMMILVLGLQQWLVITAKQNWGLVVIELVMLVICGVI LAADLRVNHVRVELEKKLKPYEDRLWFEYQLRS >gi|238617817|gb|GG669604.1| GENE 678 719320 - 719781 420 153 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2217 NR:ns ## KEGG: Lbuc_2217 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 153 1 153 153 192 66.0 5e-48 MTDFLKLTDFFLIYMLIALWIGDFFSMRRVGKSSAYVSELLKKNARGLQIALEESANLTT DLQKLVTKKVRAIHRLYWLANKTLAMIGILALQQWLVMTAKQNWGLVVIEVTMLVICGAI LAADFRVNIIRVQLEKALKPYEDRLWFEYKLRS >gi|238617817|gb|GG669604.1| GENE 679 719878 - 720444 423 188 aa, chain + ## HITS:1 COG:Cgl0741 KEGG:ns NR:ns ## COG: Cgl0741 COG2135 # Protein_GI_number: 19551991 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 68 165 70 165 207 75 35.0 5e-14 MCGRYYFDVLKSKRLQKLVNLLKEAGINVKTGEVFPNDVTAVINASHQKTQLSGIKWGFE GFRENQLIINARAESVTDKKMFRTPFLTNRCLFPMSGFYEWSPAKDKFYFTYPDDQLIFV GGFIRNEQDGPRSIIMTTEPNQNVSPIHNRMPVLIGEKDIKQWLFDNDFARGLIQHRMPA LSVTKVPK >gi|238617817|gb|GG669604.1| GENE 680 720549 - 720719 57 56 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLPNQHTMTFSYQISYLYMPPYMIYAVLLPQLQCNTIQGQSVNFTSGFNRTDVLLR >gi|238617817|gb|GG669604.1| GENE 681 720674 - 722011 1481 445 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0400 NR:ns ## KEGG: Lbuc_0400 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 439 1 430 435 388 55.0 1e-106 MKFDTKKSLYVGLAALSLVAATGFATTNASAKTYATVASNSTLSSDPTTRNVVTNGTNAL YTKAGTLRGARVIAGKGTLSQYGSSNSSQQYFRAYRVATTNRGSVYYKVVSFNGSLRGWI YGGKTTSSFGGGISSTNTMTQASMPSVTKGYTLANAAKNSLWVNPKWSQYKAQPADMSGY KSGDTFTVTGAATKTREGWLYYQVTDDNNSAVTGWVFAGGLNAPTSKPSTPTTPSTPTTT PTKDNSIQIVYLNASGQQVGQTYNWIIQNSDLKSGAKLANGAKLGDILNNSSELTDVANK NIPTGYTLSKSQPNNPVANVTVGSNYTVYVDQVAHNYTSQLSYYDSDSNQPISSSALVEG IYPVFNDTDKAVFTSATQGTIPATVFDNDIFKGGNLASLTGNPVLINGRYQTPSWKFDAT KTKQENANAKYGDTVKLFYKANPLA >gi|238617817|gb|GG669604.1| GENE 682 722084 - 724297 1816 737 aa, chain - ## HITS:1 COG:BH2223 KEGG:ns NR:ns ## COG: BH2223 COG3345 # Protein_GI_number: 15614786 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidase # Organism: Bacillus halodurans # 1 737 1 743 748 750 49.0 0 MTINVNEANLVFHLQTDHTSYIFRIMENGEAGQIYYGQKIHVQPNYKNLTSREWRDDNPS LSEEDPNFQPPAIKSEYASLGKGDFRYPAFQVTQENGSRITELTYDHYQLLNGKSRLVDL PSTFDDTNDDAQTLVLSFKDQITGLTLDLNYSIFPHQDIIVKSVKFTNPSSEKLVLNRAL SSQLDLPDSNYDLIQFSGTWARERHLYRNQLRPGIQSISSLRTSSSHQQNPFMMLARPQT TDEQGDVFGFNLVYSGNFLDSVEVDQYDTSRILTGINPDEFGWNLAPQTSFQTPEAILSY TTEGMNQLSQQMADFYSQHLVNPRFTHEDRPILINNWEATYFDFNEAKLMTIVNQAHQLG IEMFVLDDGWFGHRDDDTTSLGDWFVDKKKFPNGIEHFSQQVHDLGMKFGLWFEPEMISI DSDLYQKHPEWMIHDPKSTPTPGRHQFVLDMTRPEVIDYLYNLMSHMIESADLDYIKWDM NRHITEMFSSELTSDQQLEMPHRYILGVYQLYDRLTKAYPNVLFESCASGGGRFDLGLMY YAPQAWTSDDTDAAERMLIQFGTSYGYPQSMMGAHVSAVPNDQMGRITSLKTRGAVAFFG DFGYELDITKMAPEELDQIKDQVAFYKQYRHLFQFGKFYRIDSPFVGSGNVISWQVVSDD RKQAIAARYQLLNHPNAPYTRFYFKGLDPNQQYQINDDAETYYGDELMNAGYFVPTILAD GKESKDFYSQLFVVKAV >gi|238617817|gb|GG669604.1| GENE 683 724529 - 725356 754 275 aa, chain + ## HITS:1 COG:L66233 KEGG:ns NR:ns ## COG: L66233 COG0656 # Protein_GI_number: 15672250 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 4 271 3 268 281 239 47.0 6e-63 MSILTETYQLNTGNEIPKVGFGTWQIPDGKPTYDAVTAALKAGYRHIDTAKAYRNEESVG QAIFDSDVDRENVFVTSKLPAETKTYDGVIKDFKSTMKALDFSYLDLYLVHAPWPWGQRG STEYDEANREVWQAMQDIYNSGEAKAIGVSNFNVHDLKNILDMADVKPAVNQIRYFAGYT EPQITKFTKDNGILVEAYSPLATGALFENQDIQQMANKYGVSIAQLAIKFVLQNDVLPLP KAVNEEHIKNNTQLDFEISPDDMELLDDLSGSDFG >gi|238617817|gb|GG669604.1| GENE 684 725700 - 726290 359 196 aa, chain - ## HITS:1 COG:BH3394 KEGG:ns NR:ns ## COG: BH3394 COG1309 # Protein_GI_number: 15615956 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 5 134 7 136 186 77 37.0 2e-14 MISQTKLKIANATKHLVVSQPFDHISVTSIMEAAQLRRQTFYDYFHDKYDVLDWIYTVEI NEAVKYCNTYRYWPQTLLKMMTYFEENREFYQKVIEIDEQNAPEKVITNHIRQMVGNIFI DLSKKEQLPINTDYCSFLQELLSRTLLSELKRFLRPDSHLNLHDEVANLRDYLDDGINGL LLRTRRIDSYRHSQSL >gi|238617817|gb|GG669604.1| GENE 685 726413 - 727054 608 213 aa, chain + ## HITS:1 COG:ECs1906 KEGG:ns NR:ns ## COG: ECs1906 COG0702 # Protein_GI_number: 15831160 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1 212 9 219 220 200 46.0 2e-51 MAKILILGANGKIAKLAEKELLEKTTHQLTLFLRNADRLKSSDDKREMVVEGDTTDTKSL EKALKGIDIVYANLAGKNIEQQAKSVVTAMNTVGVKRLIWISTLGIYDEVPGNFGKWNHQ MLDGGYLETYAAAAKIIENSDLDYTLVRPAWLSNKDIVSYETTEKGEPFKGTEVSRKSIA DFVVHLINEPDKESRHSVGVNQPNTDGDKPSFY >gi|238617817|gb|GG669604.1| GENE 686 727910 - 728080 221 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508540|ref|ZP_03938589.1| ## NR: gi|227508540|ref|ZP_03938589.1| hypothetical protein HMPREF0496_0703 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0703 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 56 1 56 56 80 100.0 4e-14 MMTMKQILYISGAALTMFGTTAASSIVVNADTTPTTINGKDNKQNGNKAVSRRPLN >gi|238617817|gb|GG669604.1| GENE 687 728650 - 728826 161 58 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508541|ref|ZP_03938590.1| ## NR: gi|227508541|ref|ZP_03938590.1| hypothetical protein HMPREF0496_0704 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0704 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 58 1 58 58 97 100.0 3e-19 MQNNETTFEKNLTLPLIVPGNDAWKVTFSNDNLLGRIANLTIYVVCPIVLLIVLYLGL >gi|238617817|gb|GG669604.1| GENE 688 729289 - 730614 1168 441 aa, chain + ## HITS:1 COG:CAC3422 KEGG:ns NR:ns ## COG: CAC3422 COG2211 # Protein_GI_number: 15896663 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Clostridium acetobutylicum # 14 440 10 434 445 234 37.0 2e-61 MAKTTAGWVTRWPERISYGLSDAADNLVFQMMTTYLLFFYTDVYGLSASAVAILFVVARV ADVAESFIIGVMIDRTHSKFGKSRPFFLWYAFPYVIFAVLTFITPGFSYGGKLAWAYFTY LGLGFLYTAVNLPITSILPTMSQNSRELALLGVIRQFFGSLVQIIVAVFTLPLVALFGKG NQQAGFLGTIILFGIISLILILNTFIHVRERYANPNIAHQPLRSVAAMIRKNQPWIVISV SIFMYWLVTSIKNQTTIYYFKYVLGNENLVPLANSFTFTSLIGVLLIMRITETQSKKRTM VGGILTAFVGQIVIALGVYLSNMPTLFGGIFINSIGNGIIIGLVSIMIADTIRYGVSMGV QAEGILASTDDFGVNFGLGVGGLITAGLFHISGYVANQTQNSATITMIDVNYVWIPLVIY AAMYFVMRLYDEQRILDEIKE >gi|238617817|gb|GG669604.1| GENE 689 730769 - 733645 2132 958 aa, chain + ## HITS:1 COG:SA0189 KEGG:ns NR:ns ## COG: SA0189 COG0610 # Protein_GI_number: 15925899 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Staphylococcus aureus N315 # 4 957 2 929 929 739 44.0 0 MSEGYESEALLEKRFMNRLNAIGYKTVKISDEKQLTDHFRTLLNERNDERLKGTPLSDTE FSRVLHQMVGARNIFEIAQLLRGADIQPYGKIVIQRDDNSQLYLEFFDGHDYQNNTYEVT HQVTVNTKYVNRYDVTILINGLPIVQIELKKRGVDFSEAFHQIIRYRDESFRQLYRFVQL FVVSNGDETRYFANGDGKLNSNFMFYWTDRQNNWLNDIDAFTSSFFVPKRLHSMIAKYTI FDNDNQRMLIMRPYQVYATEAIVNQAKHHPEKNGFIWHTTGSGKTITAFKSAQRLTRETD AEKVIFLIDRSDLDLQTAKNFNSYLPKSVTNQPALDRTDDTRSLVKQLRSKDDPLIISTI QKMNVAISNPKYKKLLSQFHDQRVIFIEDEAHRSQFGEMRKNINNWFKNSEHFGFTGTPI FSENIGADGRTTKTLYDEELHHYLIKDAIRDHNVLGFSVQYIGTIKGKDTTIDDEKVPGI DTKAAFESPERLKQVATHIMLNHGNVTKNRQYNAIFTVPSTNIALKYYEVFKKLKEESNS DLKITTIFTWAENEKDAEKKQDEKFKTSRHGLDAVIDDYNHQYGTAFSTDKFSDYFGDVS KRMKEHNAQTPDDNIDILIVVNMFLTGFDSPKLSTLYVDRRLQWQGLLQAFSRTNRIEKQ SKPFGNIICYRNIKKETDDAIKLFSGGSGNFVVVPSYQELADQFDDKIKRLKEVAITPGD VDDLHNQGEDKLKDFVLAFRDVLRVQNKIRVYDDFSWDKFENQLSEQEMEQYRSKYFAAH QALEQEEDGGGEKASILDDIDFEIELLETDKIDVEYIMNLIKSINLGSKESKKSDTNKIK RMLNNADNPELKSKADLLADFLDQIIPKLQSDANVSNELNKYLAKRRQNEIQQFSEKNKI PLDIIDHQLSDYDFYGRTNSQEVMKALSEAGYDFKQKITIKKRIKSFVQKTIKRFAMS >gi|238617817|gb|GG669604.1| GENE 690 733661 - 735259 1413 532 aa, chain + ## HITS:1 COG:SA1626 KEGG:ns NR:ns ## COG: SA1626 COG0286 # Protein_GI_number: 15927382 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Staphylococcus aureus N315 # 7 511 6 512 518 613 61.0 1e-175 MVATHTEQAQQQAELQKRLWAIANDLRGNMDASEFRNYILGLIFYRFLSERVQMYANQLL QNDSYTFSEAYQDEDYRDDLVAEIKSSLGFFIEPKALFDSMIQHIQAGNFDIEMLQDSIN EVQSSTIGQESEDDFKGLFEDMDLASSRLGSTVAERSELIAKVMMNLADIDFHENELKID VLGDAYEYLIGQFAATAGKKAGEFYTPQQVSKVLSQLVTLNREEVRTVYDPTMGSGSLLL RVGDYAKVAEYYGQELNGTTYNLARMNMLMHGINYSRFDLRQGDTLENDQFPERTFDAVV ANPPYSANWNATDKLDDERFRKYGKTAPKSKADFAFVEHMLYHLKTDGRMAVVLPHGVLF RGAAEGKIRQYMIEKDNVLDAVIGMPANLFYGTSIPTVVLVFDKSRINHDILFIDASKDF EKGKNQNNLTDENVKKIIDTYKDRKDVKKFAHVADFNEIKENEFNLNIPRYVDTFEPEPP VDVDKLVADIKDTDEQISKLESEFSSMLDDLEGKNPVAQQQLTKIKELFKNE >gi|238617817|gb|GG669604.1| GENE 691 735252 - 736469 577 405 aa, chain + ## HITS:1 COG:L0310 KEGG:ns NR:ns ## COG: L0310 COG0732 # Protein_GI_number: 15672634 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Lactococcus lactis # 5 405 6 407 407 111 28.0 2e-24 MSEEKQPKIRFKGFDDPWEQRKLGEGLKQLKSYSLPRKYEVPESDTEYIHYGDIHTSSRK YVDKSFRLPNIKSGDFQLLQTGDIVLADASEDYKEIAEPMLMKNIKGRKVVSGLHTIAIR LKCGDPVYYLYLFLSPGFRHYVYKVGTGLKVFGINYDKVQKYFLAVPDEKEQKYIGKILF LTDQLIAANQSKLEQLKRLKKLLMQKIFNQEWRFKGFTDPWEQRKLGEVKTIKDGTHDSP RYVPKGYPLVTSKNLNDSGLNLSDVSYISESDFDSINKRSKVNVGDIIFGMIGTIGNPVL LDESNFAIKNVALLKNDGPIQNHWLIQYLKSDVFNRLTSEKTAGNTQKFIGLNVIRNLII DTPSIHEQVIIGSFLKLTDSIIAANQRRLDHLQSLKKYLMQNMFV >gi|238617817|gb|GG669604.1| GENE 692 736602 - 737540 663 312 aa, chain + ## HITS:1 COG:HI1375_2 KEGG:ns NR:ns ## COG: HI1375_2 COG3586 # Protein_GI_number: 16273286 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Haemophilus influenzae # 115 307 6 194 194 154 45.0 2e-37 MELYKISENKKLKIIKPEDFKIEREMQNIVQANVEQLFGDKFLSSEFTVGIYRLDTVAFD EELKSFVILEYKNMTKSSVIDQGYSYLNTLLNHKADFILLYIHFYGVNESESYFDWSQIK VIFVAKGFTQYQKDAVNNPVLPIELYEVNKYTNDYVIVNKIEKDNLGQTAHTHVAAKPKS VQSVKDVSSIALYTEEDHLSNGSEEIRRLYQAFKDAILSWDSTIEVKPVKLYIGFRIHKH NFIDIQIQKKQLKIWINCPEGELDDSLGLARNVKHIGHWGNGDYELVVKDDTNLEYILSL AKKSWRDKEKLG >gi|238617817|gb|GG669604.1| GENE 693 737713 - 738303 165 196 aa, chain - ## HITS:1 COG:all2687 KEGG:ns NR:ns ## COG: all2687 COG0732 # Protein_GI_number: 17230179 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Nostoc sp. PCC 7120 # 3 179 230 402 427 124 40.0 1e-28 MGEIFNIIDGDRGHNYPHESNFLESGNVLFLDTGNVKKNGFNFETQKYISDQKDKQLKNG KLNVGDFVLTSRGTLGNVAYYDKSISQKFPEIRINSAMLILRKESSQHLSNLFLESSLRG KIIDNFMRNDHVGSAQPHITKKDFSKVKLNIPQLWMEQDKVGKIFQNIFILIAANLRQRL NNSLNIENHSKASINE >gi|238617817|gb|GG669604.1| GENE 694 738413 - 739135 446 240 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508548|ref|ZP_03938597.1| ## NR: gi|227508548|ref|ZP_03938597.1| hypothetical protein HMPREF0496_0711 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0711 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 13 240 1 228 228 446 100.0 1e-124 MKITSRILIFLCMAISLFLINSSTAHAATYSEKDMIHDQLNLLKPSQKQQIIQQNHQWQH EGNKPQIWIYTLNRRPSDIDNLGEDLLAKIAKKATPKNGDYDWETEVDSKAQAWEMHVSL LVAYPGKGTQIKLIKSEDLDGATSDFQNWQLHRGLSTKIVNKNIAYQYFNRFSPFINKHV ANVKTMKPGISWDDIWAVILTPVVLWLIIKLIRWLHNTPTSGGSDDSSFDDGYILGRWSH >gi|238617817|gb|GG669604.1| GENE 695 739255 - 740172 432 305 aa, chain + ## HITS:1 COG:lin0524 KEGG:ns NR:ns ## COG: lin0524 COG0582 # Protein_GI_number: 16799599 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 7 305 11 309 309 377 61.0 1e-104 MASDIKLHRYFQDWMNLYKKDAVREVTYRKYEMTYRQIVSLAPDLRMCELSRLTYQKLLN DYAETHERQTVMDFHRHIKSSLIDALEEDILERDPTRKAIIKGKKPGPHKTKFLNQHEVQ LMLDSLSLDAGVNWDYFILLITKTGLRFSEALAVTPNDFDFARQTLNINKTWDYKSRQAG FAPTKNFSSMRKIQLDWQTVIQFSQLTKELSEDKPIFVRSKVYNDTINHYLERLCKKSGI PIISVHGLRHTHASLLLYAGVSIASVARRLGHSNMNTTQQTYLHIIQELENQDNDKVMKH LASLV >gi|238617817|gb|GG669604.1| GENE 696 740159 - 740572 72 137 aa, chain - ## HITS:1 COG:SA1625 KEGG:ns NR:ns ## COG: SA1625 COG0732 # Protein_GI_number: 15927381 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Staphylococcus aureus N315 # 1 109 80 190 409 93 48.0 1e-19 MISSSINYNDVLLNITGASIGRSAVYRLVRHANVNQHVCIIRLVDGYDSDFLQLFLSSYY GQIQIFRNQAGGGREGLNFFQIGEMTFKFPTLNEQKRFSEFFIDIQNTIAANQGKRLQIK NALLSCQALFLTRFTLN >gi|238617817|gb|GG669604.1| GENE 697 740972 - 741757 290 261 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 5 248 1 238 242 116 33 3e-24 MYTDLKNKVAVITGGSKGIGNAIANRFGQEHMSVVINYNSDEAGAQKVAEEVADNGGQAT IVKADVSTENGNQELLRAALDKFGDLDVWVNNAGMEIKSPTHELSLEDWNKVISINETGV FLGAKTALNYFKEKNKKGNIINVSSVHEQIPWPTFASYAAAKGGVKLFTQTIAMEYAKEG IRVNAIGPGAINTPINAKKFADKAQLDQTVSMVPMNRIGKPEEVAAGAAWLASDESSYVT GITLFIDGGMTLYPAFKDGQG >gi|238617817|gb|GG669604.1| GENE 698 741744 - 741872 72 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDRVNRFDDKLSVVNLYFESATITKKEVRAHATSHRVNPRMD >gi|238617817|gb|GG669604.1| GENE 699 741835 - 742470 639 211 aa, chain + ## HITS:1 COG:CAC0219 KEGG:ns NR:ns ## COG: CAC0219 COG1573 # Protein_GI_number: 15893511 # Func_class: L Replication, recombination and repair # Function: Uracil-DNA glycosylase # Organism: Clostridium acetobutylicum # 27 210 25 199 199 95 33.0 5e-20 MQLHTVLTPEWIEWGKKKSEENPHLEGFVAGEGGYHPKVLLLGEAPGDKEVKLGHPFQGP SGKELDRWLASLGLTREDIYITGVVSARPFSIGKTGRKRDRRPNNTEVKQWAPMFDFEMT HFKDLLMIPMGNASLQRLLGNKAKIGDLHGQLIEQPIQYLDKSTDTFKLTDNIRKIFPLY HPSYSKRFKNMKTVVDQDSANLKKLLAQVLS >gi|238617817|gb|GG669604.1| GENE 700 743156 - 744364 637 402 aa, chain + ## HITS:1 COG:BS_pbpX KEGG:ns NR:ns ## COG: BS_pbpX COG1680 # Protein_GI_number: 16078758 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Bacillus subtilis # 42 395 44 390 391 139 27.0 1e-32 MKWGRRWAYGFLLLVVIVIGGALAIKQHLDAQNARQAEINRSEGNRSSSKKNASRSKNKQ KETVKFQAKGSGDHADTQTNDITMYLKKNHFVGSALIIKNDRFLYRRAFGYANYADRIKN RTNSEFQILSIQKSLTAACVMKLVQERKLSLKTPLAHFYPTISNATHIQIRNMLDMDSGL SMKEVGSTRLLNEKQVVAFAVKHLSSKTSEFGKWQYQPVNYVLLSGIISRLTGETYKKYF EQTFIKPMNLKGTGFVQDQPLTLYKTTGYRYQKADQFSQNYRRPFNETQASMNNELGTGQ VYMTAFELFKAEHRLLQGKVISLSNVRILHTPGSSSTYGGGVYNQTNGIRSHGIGYGYES SILESRDGKNGVVLLSNNYRPAASIQNLSVQLFNRVMNGELN >gi|238617817|gb|GG669604.1| GENE 701 744449 - 744592 117 47 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508555|ref|ZP_03938604.1| ## NR: gi|227508555|ref|ZP_03938604.1| D-Ala-teichoic acid biosynthesis protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] possible D-Ala-teichoic acid biosynthesis protein [Lactobacillus buchneri ATCC 11577] possible D-Ala-teichoic acid biosynthesis protein [Lactobacillus buchneri ATCC 11577] D-Ala-teichoic acid biosynthesis protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 47 1 47 47 63 100.0 7e-09 MALLEWIQRPVVKFVLTTLFYFAIMMVLFYLYDYSGINQAKFIYNDF >gi|238617817|gb|GG669604.1| GENE 702 744607 - 746133 1140 508 aa, chain + ## HITS:1 COG:SPy1312 KEGG:ns NR:ns ## COG: SPy1312 COG1020 # Protein_GI_number: 15675261 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Streptococcus pyogenes M1 GAS # 1 508 1 512 512 505 49.0 1e-143 MQKNLIDMVDSYAETKRDEVVYHYNNQTNTYLDLKHYSDALAKHIDAMKLPANQPIMVFG GKSFEMIATFIAIVKTGHSYIPVDVDSPDERLVLINSIAKPVAVVAVEDLPVSLGTVPVI TKKELGNIFLEREDYQVTHPVEGDQTFYIIFTSGTTGVPKGVEISYHNLMSFVDWMVGND FQLPDDLQMLQQPAYSFDLSVMSLYPTLFKGGTLHVLSKKMTDNFLVLFTTLPTLPINVW VSTPSFMNICLLEPTFNAENYPALTDFLFCGEELTARTAKMLKKKFPKAHVFNTYGPTEA TVAMTQIEITDEVIQKFDRLPIGYVKNGMHIRIIDDDGHVVSDGKQGELEIYGSSVSKGY INNPEKTKRVFSTLNDQPAYKTGDVATVRQDGLIQYYGRKDFQVKINGYRVELEDVAILV DKQKYVKQSVVVPKYNAQHQVSMLIAYIVPNENHFNNELDLTAAIKSDLKNSMMSYMIPQ KIIYRKSLPLSPNGKVDIKSVINEVNSK >gi|238617817|gb|GG669604.1| GENE 703 746130 - 747347 801 405 aa, chain + ## HITS:1 COG:SP2175 KEGG:ns NR:ns ## COG: SP2175 COG1696 # Protein_GI_number: 15901985 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Streptococcus pneumoniae TIGR4 # 6 400 12 411 413 376 50.0 1e-104 MRWYIPYGNPTYFIWLAVALIPLMIGLLYGHRFRWYQTLVSLFFLILTFGGPNWRTGIAL ICYFVYQVLLVSAYFHYRRRKDSPNKGWVFVLSVILAILPLVVVKVTPAIQSGKQSIIGF LGISYITFKVVQTIMETRDGFIKEYHPIIFGQFLLFFPTISSGPIDRYRRFVSDYEAVPA QKDYLDLVQTGVRYIFLGFLYKFVLAYYFGSVLMPQMQFGAMMAHGFSWYIVGYMYTYSM DLFFDFAGYSLFAVGISYLMGIKTPMNFNHPFKSKNIKDFWNRWHMTLSFWFRDYIFMRL VFFMMKHKVFKSRITTANVCYIINMLIMGFWHGETWFYILYGLLHGCALVVNDTWLRYKK KHQDKIPHNKFTELFAIFITFNFVCFTFLIFSGFLNTLFFGPSKF >gi|238617817|gb|GG669604.1| GENE 704 747387 - 747623 324 78 aa, chain + ## HITS:1 COG:SP2174 KEGG:ns NR:ns ## COG: SP2174 COG0236 # Protein_GI_number: 15901984 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Streptococcus pneumoniae TIGR4 # 3 78 2 77 79 66 42.0 1e-11 MDDVKETVLSILNDLTGEDFSTRLDENLYDSALLDSMGTVQLLLDLQDKLGVNAPISEFN RSEWDTPSKIIAKVEELK >gi|238617817|gb|GG669604.1| GENE 705 747620 - 748912 709 430 aa, chain + ## HITS:1 COG:SPy1309 KEGG:ns NR:ns ## COG: SPy1309 COG3966 # Protein_GI_number: 15675258 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Streptococcus pyogenes M1 GAS # 5 413 3 409 416 325 42.0 1e-88 MKVKKRLFEIFGPILFAALLMFAVFLSPTWIKFSYVSPKVQRNAAASLSPLILKGQLIKR SALENNYVPFFGSSEWSRFDPFHPSVLATKYHRSYRPFLLGARGSQSLTQFFVMQSINQQ MKNKKAVFFVSPQWFVPMGEDPNAFSFYYSPLQTTTWIQQEKGSKMDRYAAYRLLQMPSG DSDKIISGTLARIAAGLKPTSFQMLYVNYRHRVLLNEDQIYSRFRIPVNNAKKIANNAAE LPKTYHFQQLDKLAGQLGEQHTNSNRFQIGNRFWNRRLKHHVKALKGFQSNMSFLKSPEY GDFQLVLNQFAKDHTNVLFIIPPVNQRWQKYTGLSSEMLKQFDQKITYQLRSQGFNHIDD LSQDGNVNYFMTDTIHPGWRGWLKMDQEINPFLTKKQKAPHYRIDKSFYSKGWQQAGSDF DYDGYRNDGR >gi|238617817|gb|GG669604.1| GENE 706 748945 - 750240 1099 431 aa, chain + ## HITS:1 COG:lin0544 KEGG:ns NR:ns ## COG: lin0544 COG1680 # Protein_GI_number: 16799619 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Listeria innocua # 117 409 93 377 398 86 25.0 9e-17 MILFFFCGMLFAGSIAIHGLMDGYNPILKTSNKRYDAQIVKRSNAYSIYRFGPYFTSSST RTADSNGNKYPNDYVRVMQTKTTKTGTYAKLRYFNQNIGWMNVKGLKPVSFSQIAAATMK QYDVSGSAILASAGSKHTVTVNNGFANAAKKTANSSDGTVLYPLASLQKAMTGAIIQQLI SSGNLSAGTKLSRYYPQVKGSSNITIQQMLSMSSGLDNNDTTPAKVMTENQAYTSMLKRL ESTGKMTYDYSDVNYVLLAGIIAKATKQSYVSNLKTRIINKLGMKNTKVVDSNNIDTSSI ALSYSRKATTDYTSPQSVSLPRLSAIPGAGNMLTTPSDYYKFILGLQNGSVLTAKQYQQL LSYGTVYSGGMYVTQNGVKYNNGSFGGQGYHSGYFATTGNYHMAIVFENQDPLGLTPKDF VKKMYQVATYY >gi|238617817|gb|GG669604.1| GENE 707 750328 - 750813 378 161 aa, chain - ## HITS:1 COG:lin0018_2 KEGG:ns NR:ns ## COG: lin0018_2 COG4990 # Protein_GI_number: 16799097 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 161 4 164 164 156 44.0 2e-38 MKLSIPVIAQRPELPTGCEITATTMMLQYAGAVVDKVQLAHEMPYHPTDPNQGFVGNPFT DDGDSIYPSALTDLVTTYAGNAVNLSGQPLVDLKQYLSATGHPIVIWVGEFDGFHTHALL MTGFNNSAIYFNDCWTKKQDSLPEDAFYKIWHNKQQMALSY >gi|238617817|gb|GG669604.1| GENE 708 751062 - 752225 813 387 aa, chain + ## HITS:1 COG:lin0566 KEGG:ns NR:ns ## COG: lin0566 COG0406 # Protein_GI_number: 16799641 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 33 261 6 212 231 107 31.0 5e-23 MRKSLIVVTTVLSGLFFWGTANQQEASAASKPVEIYLTRHGQTMFNINGRGQGWADSPLT DTGVQVAHQLGYGLYGLHFSAAYSADNMRTFKTAHYALDSSGNGKVNVTWTPNLREGGYG SFEGQKYDDVNKITMPLVRPAGTYTGPQDFGKAQQALGKDFWPALQDAYHDAETIDGGKY SDSTLPASLKAESASQVISRMDTELTSIAKKAANKGGNVLVVSSGMSIPEWLSAQSNYTV NDFVNWGNEAVMKVTYKNNQFYFPKYVTSDTLLYTINKGAKLQQLPANRLSVNQFKLKKN VLTGKTSQNASLTVLTDKGATLQTAKAKPAGTFGFKLTKNALDKVKHFKQFKVLSTPAGA KASLNMNTDVVTQTVFGNKTATVNVIQ >gi|238617817|gb|GG669604.1| GENE 709 752348 - 752656 340 102 aa, chain - ## HITS:1 COG:BH3484 KEGG:ns NR:ns ## COG: BH3484 COG0509 # Protein_GI_number: 15616046 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Bacillus halodurans # 22 99 25 102 128 62 42.0 1e-10 MANPIDDSNYLWREETSEGHTRIGLNDEARNQIGQISYASFPKNLNEVKVGEEFFSFEGA KAVEDIHSPQSGKVARVNTELLDHPDYLNDADKEKNWIIELY >gi|238617817|gb|GG669604.1| GENE 710 752662 - 753669 837 335 aa, chain - ## HITS:1 COG:lin0931 KEGG:ns NR:ns ## COG: lin0931 COG0095 # Protein_GI_number: 16800002 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Listeria innocua # 27 323 39 330 331 217 37.0 3e-56 MFESVSRYLMTNDQFTDTLFEWSRPLKASVVIGANQNVYSELNLDYIKQNHIQITRRAGG GGAVYVDSGNLTYAFVDTDDGTNYMNFKKYATPIINVLKKLGVNAALTGRNDLTVDGKKF SGMAAFKIGNRFYCGGTLMIDVNLDAADKALNPPKSKLASKGVKSVHSRVTNIRPYFSAK YQDISINDITEIILKEIFKTDTIKEIPTHVMTEIDWQKVNDITGHDYQDETWTMGKRYHD DNFHSNHYEGVGNVEISFSVNDGIVSHAKLFGDFNKANGNLKEIEDKIAGVPFEKDNLEE AFSHTHLADNIGNLTPAQMADLMVNPVYQQKQQEG >gi|238617817|gb|GG669604.1| GENE 711 753901 - 754458 411 185 aa, chain + ## HITS:1 COG:BS_yciB KEGG:ns NR:ns ## COG: BS_yciB COG1376 # Protein_GI_number: 16077404 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 36 184 44 193 194 147 46.0 1e-35 MKRFLMIFSTLAITAVIGLALLAGFGSRKTTYAKYKAIGSTVNWHDPSESRPYPNLKNES NLWIYVSTKNQRVYLHGNGQVIYKMYCSTGEASSPTPKGTFHIQAQRGKSFYNAASGEGA NYWVSWLDHGVYLFHSVPVTKTGQYIPSQAEKLGTPASHGCVRLTVADAYWMYRNIPYGT KVVIK >gi|238617817|gb|GG669604.1| GENE 712 754586 - 754903 317 105 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0417 NR:ns ## KEGG: Lbuc_0417 # Name: not_defined # Def: glycine cleavage H-protein # Organism: L.buchneri # Pathway: not_defined # 1 105 1 102 102 87 40.0 2e-16 MAGTIDDSRYFWKARANDGNFRIGLSDAAREEFGEISSVTFSTSDKEIRDGHDFLTLESP NTVSDTTVLHSPESGEVVRFHTELLYQPDLINSADRNKNWIVEVY >gi|238617817|gb|GG669604.1| GENE 713 755162 - 756007 856 281 aa, chain - ## HITS:1 COG:STM1288 KEGG:ns NR:ns ## COG: STM1288 COG0656 # Protein_GI_number: 16764639 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Salmonella typhimurium LT2 # 7 280 11 284 285 262 48.0 5e-70 MKDLHLGDRTVPAIGLGTWHMGDSAATRSTEIKAIQAGIDAGANVIDTAEMYGNGRSENL VGEAIANINRDHLFLIDKVLPSNASADRMEHRLDISLKLLGTDYVDLYLYHWRGAVPLSE TVETLQLMQKKGKIKHWGVSNFDLPDMKELLDLPGGDQVAANEDLYNLGSRGIEYSLLPW QRQQGIPLIAYTPVAAGDERGQLINHSAVKEVAEVHHATPWQILLAWAIRDGSTLAIPQS GDPKHAVDNVKAGLITLSDDDLAKLDTQFPKPTSKQPLDIR >gi|238617817|gb|GG669604.1| GENE 714 756125 - 757585 957 486 aa, chain - ## HITS:1 COG:lin0882 KEGG:ns NR:ns ## COG: lin0882 COG3428 # Protein_GI_number: 16799955 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 56 481 64 486 494 173 28.0 9e-43 MTSEAPKQHLNPFSLFYYAYKGILNWGIFALIALPSQRTNFWVVIGTLLSLVIIVGLLKF FFFTFQIGGDMITINSGIFVKRHTHIPYGRIQTIQRSQWFFLKPLHLEQLKIETAGHESH RPEVTLPVVSESVREEIDRKRLAVKGSSTTPDLTTDQSAKPTVDSSTPLAATHHYEINPH DLNVFALTSFGILPLMGILAALYGKIQEYIPQRLVNTVTKEIISQSILIISGIVLLIVII AVVGSYLSLVQKYYKFTLTSESNQLKTYQGLFQRKSVTIPINRIQALRVKQNVLRQWAKI STVQALAASSAGDDDKGNDMMILPVIKTHDVFNQLKPFVSWAPDQFISLERLPRQNYFYF IRNAILWTLIPIAGCIYFFRLWGAFSLLLLIISFFLGWYSSSNTGWQLHGDQLIMQSGWL FTRTEFIIPKKNVQSFSLNQSIWMSHKKLAHLRVNVRHGNHNEQVEIRYVPFKDAEKIFN WLRIRN >gi|238617817|gb|GG669604.1| GENE 715 757575 - 758054 237 159 aa, chain - ## HITS:1 COG:lin0881 KEGG:ns NR:ns ## COG: lin0881 COG3402 # Protein_GI_number: 16799954 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 7 157 10 159 160 102 35.0 4e-22 MTEGTHLPEKIKNVWRISAFINFAVLLIIAIGCYIAFIFFNWQWLFWPGIGFGAIAIIDL IFELILVSYRYAFWRYNLTADAVELQSGYIFKKLVSIPIARVQDVTLSAGPILQSQKLQT VQITTASTSHKIDGLEPQTAEQLRRQIMQLAVEVKENDV >gi|238617817|gb|GG669604.1| GENE 716 758291 - 759424 949 377 aa, chain + ## HITS:1 COG:L125116 KEGG:ns NR:ns ## COG: L125116 COG0477 # Protein_GI_number: 15672105 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 3 374 24 385 387 243 42.0 3e-64 MSLIFPVMPFIKNELHLSATDMGIMNSLFAFAQLIASPIVGQISDRIGRKPVLVWGLGLY MISEILFAATNWLWMFDISRTIGGLSAAMVVPTTNALAADLTTPRQRARVIGLLSAAFSG GLILGPGIGGFLAKIDYKTPFWCAAVLGLLSMISLQTMLPSEKEIESIAKDNIVPPISKG PSRATWEQTKRLFGGPMKILFLLILISSFGLVGFESIYSLYVNEVFGFTIGNIALVLTLN GLLSLMFQALLFDRLVTWLTEKRLTRYCFFLAAAGTVWIILAHSKLEVIIATLIVFTSYD LIRPAITTLLTKASATGQGLINGVNMSLTSVGNIIGPIMSGALLDMNYHVPYVIVAAFLA LSWLMTYMVKDHFTVTI >gi|238617817|gb|GG669604.1| GENE 717 759619 - 760194 445 191 aa, chain + ## HITS:1 COG:L114370 KEGG:ns NR:ns ## COG: L114370 COG1846 # Protein_GI_number: 15672690 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 1 180 1 185 291 79 33.0 4e-15 MTYNSQELLNLFGRLFQQRAFMSAAIKSVQFGRSQDPQKNPNQLRVLHELAEKKALTNTD IVEALDIRPSSVSAMVSKLEAAGLIERHESPDDKRVMLISLTAKGQNMIDDSRQFTDQLS ESLFSSLTDDEQQQLRKLLSKLITDLEQKMPENWSEPKNFADFMRMAHDWHHNMDGLNRD FPFGGFNRNRD >gi|238617817|gb|GG669604.1| GENE 718 760206 - 761966 1399 586 aa, chain + ## HITS:1 COG:L116532 KEGG:ns NR:ns ## COG: L116532 COG1132 # Protein_GI_number: 15672693 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Lactococcus lactis # 12 586 8 582 584 639 56.0 0 MEQVMQRPTRPKNKSKFKIKGFLRLIAQIKPKYWQLGVGLLLGMIATGMQLAVPKFAKDL INQLGHHLNTQLVIGVILLFVASALISAFSGAILGFFGENVVYKLRGKLWQKLLVLPVNY YDETKSGEITSRLVNDSTQVKDLLANSLPNMATSLLQLVGAFILMLVMDWKMTIMMFIAV PLVILAILPVANKSRKIAHARQDALADFNGSASEILSEVRLVKSSNAEAVERQSGHNRIS KLYQIGLKEAIYDSVAGPLMTMVMMGMVVAMLAYGASRVAQGTMDMGTLFSFLMYLVQMV GPFATLGQFLSATAKASGSTDRIQELLGTSEENQVDGHPVDAQGQTLSMNKVDFAYEDGK SVLNKVSFEAKPNSIVAFAGPSGGGKSTIFSLLERFYQPTGGTIKIGNQNLESVNLTDWR EQIGLVSQDAAIMAGTIRYNLTYGLSGQYSDEQLWHVLEMAYAKEFVEAMPDGLDTQVGE RGVKVSGGQRQRLAIARAFLRDPKILMLDEATASLDSESEMMVQKALEKLMHNRTTLVIA HRLSTIVDADQIYFIEKGHVSGHGTHKQLVAELPLYREYVENQMSM >gi|238617817|gb|GG669604.1| GENE 719 762169 - 762774 631 201 aa, chain - ## HITS:1 COG:BS_yocG KEGG:ns NR:ns ## COG: BS_yocG COG2197 # Protein_GI_number: 16078980 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Bacillus subtilis # 1 201 1 198 199 200 52.0 1e-51 MITLYLAEDQSMLSSALAQLLNLEDDLKVLGTSGDGQTAWLDINRLKPDIAILDIEMPKA TGLDVADDILAAHLATKVIILTTFAQKAYFARAVKAKVSGYLLKDSPSDDLVTAIRNVMA GQTIYDPELVRNMVNAADNPLSDQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIF SKLGVHNRLEAVNMAKNNKWF >gi|238617817|gb|GG669604.1| GENE 720 762771 - 763871 761 366 aa, chain - ## HITS:1 COG:BS_yvfT KEGG:ns NR:ns ## COG: BS_yvfT COG4585 # Protein_GI_number: 16080460 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 43 356 1 318 328 134 30.0 4e-31 MIKGLRSNLKTYWYSYIWLIFLIEDISDKIPPKTSNDWFWIGMTFLFLIAYVITSASQKY QIAGMVAETLIGMIFTFFDNNFWILIFPGWQISSILAYAPKRYFRLFATVYYATFIGEMI NLKILNPVNLDLWSFILPAVSPIFAYSLSRSMKHMQDLARTNQRLQSVIKRGERERIARD LHDTLGQSFSMITVKSQLAKKLLEKQPEKVPAELDDIIDTSRQNLQLVRNIVNNLRQEMI DESMIKQQKNLQEAQINLQTEGEQDANKWPTAIQIKVTPILQEAITNVIRHSRATLVLIS FSRPDNDSYQVTIQDNGHGINYSREGSHGVSGMQERVQADGGQFNIQSNKIGTLVSAQWS KEAEIK >gi|238617817|gb|GG669604.1| GENE 721 763849 - 764625 669 258 aa, chain - ## HITS:1 COG:SP2002 KEGG:ns NR:ns ## COG: SP2002 COG0842 # Protein_GI_number: 15901825 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 18 240 17 238 245 85 26.0 7e-17 MKTLGYQISFNAKRVFLRNFNYLFFTILMPIGFYILFTKVLISGTTAQELVFAKQYLGSM IVYSVLINAMFGLGQIMQNDRQHKLLSALSLTPRGTKYYYISIGIIMSLVNMLAIILMQL VAKLTWHINLSLGESITVIVIAVLGTLPIMGVGVLSSFAKTPQLTSIIANLTVFPLAVIS GLWWPISMMPNWVQTIGKATPTYLTSKMINLAINNQSLPIHDIMGIVIWTVIILVLIFVL IKLVQKSGELKNDQGTAV >gi|238617817|gb|GG669604.1| GENE 722 764627 - 765514 631 295 aa, chain - ## HITS:1 COG:DRA0007 KEGG:ns NR:ns ## COG: DRA0007 COG1131 # Protein_GI_number: 15807679 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Deinococcus radiodurans # 7 294 5 293 301 168 33.0 1e-41 MTAAIQLKNLSFAYPNKRVLDHLNLQIQSGEIFGLVGPNGAGKTTLLNLIQGILSSHNHT ITVLDSQPGSTIVKEKVATMFQDDLQINNVTVREFIKLFAAQATHPKNPETVIKELGLTD IQNQLMNKLSGGQRRKVSFASAIVSNPQLLFLDEPTVGMDAETRQNFWRYIEKLRQQNVT IVITSHYLEEIQKVADRIAILQDGQFRYVGTWQTLQSHHDNGQFNFNTQLERSLFTHLPA VESATQTDANMTLISNDTDLTLKALLPFIDQLHDITITRESLESIFLEMTNKGDH >gi|238617817|gb|GG669604.1| GENE 723 765786 - 766559 239 257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 1 252 1 238 242 96 29 3e-18 MAEKVAFVTGGGQGIGEAIATRLHEDGFKVAVADLNIDNANKVAAKLSPDGSQAIGVKVD VADRDSVFSAVDETVDKLGGFDVIVNNAGLGPTTPLDTITPDQFRLVYGVNVGGVLWGAQ AAHQAFKKLGHGGKIINATSQAGVVGNPNLALYSGTKFAVRGITQVLARDLAEEGITANA YAPGIVKTPMMFDIAHQVGKNAGKDDEWGMQTFAKDIALKRLSEPEDVAAAVSFLAGKDS NYITGQTIIVDGGMQFH >gi|238617817|gb|GG669604.1| GENE 724 766850 - 767374 394 174 aa, chain + ## HITS:1 COG:SPy1258 KEGG:ns NR:ns ## COG: SPy1258 COG1309 # Protein_GI_number: 15675217 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 1 159 28 174 180 58 29.0 8e-09 MTVSDITKFARINRSTFYTHYRDKTAMVSDFEDQILTHIEKLVLDHSDEKIGYQDVSEGT PHVCAAVETVVDYLNQEFNMSRALLGPGGDSQLEVKIRKLLGRLIDRQLAEVKGQTGPTK IPDNFAREIIVSGLMSIIKVWLTEGNPETPKEISTIIMKTRYLSPFDLLDVKKA >gi|238617817|gb|GG669604.1| GENE 725 767576 - 767821 348 81 aa, chain + ## HITS:1 COG:BS_odhB KEGG:ns NR:ns ## COG: BS_odhB COG0508 # Protein_GI_number: 16078996 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Bacillus subtilis # 2 76 1 75 417 61 40.0 4e-10 MLKEVHMPKLSPKSDDYFFGEWIKKPGEAVKQGDILFEVETDKVISQVESEENGVLKEQK VATGDTTKVGDLVATIEVSDS >gi|238617817|gb|GG669604.1| GENE 726 767836 - 768711 756 291 aa, chain + ## HITS:1 COG:all1694 KEGG:ns NR:ns ## COG: all1694 COG0320 # Protein_GI_number: 17229186 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate synthase # Organism: Nostoc sp. PCC 7120 # 9 283 4 279 291 283 50.0 2e-76 MEKKEAPKKPDWLKVTYDQKKVDQMNQLLSGLKLNTVCAEANCPNLGECFGSGTASFIIL GPNCTRACRFCDIPHGHPKPVDLMEPYRVAEATKRLGLSHVVVTSVDRDDLPDLGADQFV KTINEIRRLNPDTTIEVLTPDFQGHEDCLDKVIAAKPDVFNHNMETVRSITPKVRHRATY DTSLKVLKYVKQHAPKTTFVKTGIMLGLGETDEEVYQLMDDLRAIDVDFLTIGQYVQPGP KNYRLREWVPMKRYATYYREARKRGFRFVASSPLVRSSYKAKEELEAVYGK >gi|238617817|gb|GG669604.1| GENE 727 768708 - 769703 699 331 aa, chain + ## HITS:1 COG:lin0758 KEGG:ns NR:ns ## COG: lin0758 COG0095 # Protein_GI_number: 16799832 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Listeria innocua # 1 326 1 328 329 183 33.0 5e-46 MIYLPVTSTDVYHNFALEYYLMSEKHFKEPVFMLWSTTPTVMLGKYQDAAAELNLDYIKK HGVHVVRRYSGGGTIYTDQGGYQFTLIYPDEHSEIDFSAGLTLIKAALNQIGIKAETDSR NDLVVDGRKVSGSAQYVTPGYKLHHGSLLFDSDLDTMAHALRVDPVKLKAKRIASVHQRT VNLKEQQPLWSASEFRERLLEAFLAAGQYQKYQLTDQDEDRISAIATQRFANPDFIYGQG NRFEHTGKRYFKGGGLAQISYTLSNHQLKDVRLSGDFFSNLDRDSFEAALIGAVFDQKTI SRIIKNQLDIAPIMGISADQLTSLLFSSELN >gi|238617817|gb|GG669604.1| GENE 728 769865 - 770758 859 297 aa, chain + ## HITS:1 COG:lin0819 KEGG:ns NR:ns ## COG: lin0819 COG0656 # Protein_GI_number: 16799893 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Listeria innocua # 4 269 3 264 274 260 50.0 2e-69 MDGLHSTITLNNGVKMPRFGLGVWKTDNRTSRDSVAAAIKNGYLAIDTARQYGNEQGTGA GIKLGLGQAGLKRSDLFVTTKLYNGEQGDYDQVSKAFENQLKDLGLDYVDLYLMHWPVDK TYIESYHAMEKLYREGKVRAIGVSNFDNDRMEKLLEEAEIIPAVNQMEFNPTNQEREILA FDQSHDIEMTAWSPLGGGESLTNPVIDALAKKYDRSAAQIILRWEWQRDIVTVVKSTHEK RIIQNSQIFDFSLSDEDVQKINELDQGKRGLWYDDFQWHNPNGKVANGIDQWPDTRK >gi|238617817|gb|GG669604.1| GENE 729 770905 - 771258 142 117 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508583|ref|ZP_03938632.1| ## NR: gi|227508583|ref|ZP_03938632.1| hypothetical protein HMPREF0496_0746 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0746 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 117 57 173 173 204 100.0 1e-51 MRTLSFERIPLMATLAACGSAKRSAYSTNSKAHQLSRNKTGTFNLSLRTKSNTFFFIVHH SFILIIGNFLISLIFYPGPFFQDPLLLSIRSLAWSLPTIIVFTLILSPGVQTGFSKH >gi|238617817|gb|GG669604.1| GENE 730 771664 - 772584 279 306 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 294 1 300 311 112 28 6e-23 MNDELVLETKNLKKSFGKFQALRNVNLQLHKGEVLGFIGPNGAGKSTTIRVILGLIKATG GSATVFGKDVWKDSVAIHKNLSYVPGDVYLWPNLTGGQTIDLLLHMSGQKHTARTDQLIK EFKLDTSKKNRTYSKGNRQKVALVAAFSTDVSLYIFDEPTSGLDPLNEVIFQQHVAELKK AGKSVLLSSHILSEVEKMCDTIAIIREGNVIEAGSLESMQHLTRNTVAVRTKKPLDELQK AGGVYQLKFNDASKTTAEFSVDSDQIGNVMDLLSAKTIVQLKTTPPTLEDLFLRYYQSAD EQKGGD >gi|238617817|gb|GG669604.1| GENE 731 772586 - 774193 1494 535 aa, chain + ## HITS:1 COG:BH1004 KEGG:ns NR:ns ## COG: BH1004 COG3559 # Protein_GI_number: 15613567 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative exporter of polyketide antibiotics # Organism: Bacillus halodurans # 4 533 6 532 534 251 30.0 4e-66 MTQYAQTLALLKANLKRDWLKMTIWLVVLAGMFVAVAAKFEGIYGTPKQISTIAETLKSQ AMVSLFGPMTTAHLNTAIIFASEMMVFWGIFMVIFNFSLSVGATRGQEESGLTEMVLGGH PVGRLAPLAAAGLELVIANGAFVIVTGAGMMVANMPGSDGNGNWLFAVTLGAVGLSFGLI SLIFAQLVADSHNVAIYNYVFFGITYLVRMMTDVSNPDYTWFSPFGWIEKADIYTKNNWL PVGLLLMLGVVGFAAAVILNGNRDIDTGIIQVRGGKRTSRFLRGSGTLLFWNQKAISLFW IVGMAVLGASYGSVFNSISKIVNDSPVVRQVLGQSGVRHLEQNQILSFVGILGVIFSVLA VVGGAMVINHLYTEERRGYLQMINTKPESRSKLLATYMVYGFVLSVIILFVALMAAMGAG NSVLKHPLAFKYFWRLFIAMLPTLALFTGILVALIGIMPKWRAVVWIALGGAFVISYFGR LIDLPAWAMKLSPFYWFRKVPLAHIDVAPVTWMLGIAFVMIVIGFIGYNHRDIES >gi|238617817|gb|GG669604.1| GENE 732 774241 - 774879 558 212 aa, chain + ## HITS:1 COG:lin2076 KEGG:ns NR:ns ## COG: lin2076 COG1309 # Protein_GI_number: 16801142 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 10 212 3 200 206 93 29.0 3e-19 MGKRLPRDPQKEKAILAAAVKAFGTDSFRASTDKIAESAGVSKGSVFRYFDSKKKLYVAA VHQAMDTLISVVDFNVWTDSDDLVSMIIRATKYKTELSHRYPNEFALLTRVYAHDVNVPE KLRNEVFSTFNKWAEQTQNIIVDTIVDKLTLRPELDEVTVKHYLSITIQEISKRIQDYFE KHPGLNRIEDMTEIIDEVKGYMDMVQYGIVKQ >gi|238617817|gb|GG669604.1| GENE 733 775080 - 776222 1104 380 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508587|ref|ZP_03938636.1| ## NR: gi|227508587|ref|ZP_03938636.1| hypothetical protein HMPREF0496_0750 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0750 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 380 18 397 397 738 100.0 0 MGLLDHQFSYKNEPSFTEKTNSEIPELNHANVNLPYPDLQKLLNKISILQDQIASLQQET QTNKVTSLKQLDSTITIDQLWDYLQSHNDLKKDLLKKVNVAQAFPVRLHLSGANIGTKYV NEEIVRRYGLSDGDLANANFEDSKITVNVIKHNGHTLDDAGIKFYTGEIVDRNGHLEVDN PTGDGNISGTAAFEMGALPYVPTHEEIDKYDLKVGQIVDVSWYASNPGTIKIVWIHPEEA ADSQAESKPEKPKKPTGNTPKPWTPNYAEIKPIVSGKTVLLVGDSVYTENLRRVTDAYDA TLTEVDSIDRERFEAMVESADMLIIALHYVSHRDSNLAVDLAKAHGLTYATFNQHAKIPF EIALRTAAQRYEAAQVNAEE >gi|238617817|gb|GG669604.1| GENE 734 776353 - 776733 155 126 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508588|ref|ZP_03938637.1| ## NR: gi|227508588|ref|ZP_03938637.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 126 79 204 204 240 100.0 2e-62 MAYYQNHPNQRAKLKRRMAATGVVNGVLDFVDTGHHFFIFEKYLLEVKPIFPTINANQDN TQVKINNQIVAKSLNKNVTRTFGPYIPGRYNIVMTSNNHEKTKMVSRTFEWIDPSPQSLH VQENFK >gi|238617817|gb|GG669604.1| GENE 735 777073 - 777732 508 219 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0434 NR:ns ## KEGG: Lbuc_0434 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 218 1 216 216 186 44.0 5e-46 MVKQGKFAKSSKLRQIKEIKRARQEKSDRTITEKQFGKFIFVRYGLTMKAKMIGTDKETM QRFLIEWVDHAPKDKNWSIKALAVNTLKKINVRVPYQFYRAVVRNWSKYQRFLKREIPAV PLKQRILLTDTLTTEEFEQLVARQLAANILLSTLGNNPQLMQQINLEQVADLSKNLMTEN GKGIDWQKVQSVFKPMPFDMSTAPDTPTKNWLGHLLTEK >gi|238617817|gb|GG669604.1| GENE 736 777744 - 778415 512 223 aa, chain + ## HITS:1 COG:L0239 KEGG:ns NR:ns ## COG: L0239 COG0664 # Protein_GI_number: 15673985 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Lactococcus lactis # 9 221 8 219 222 126 33.0 3e-29 MHTEHALDCVNLVPIFKSLPLDEKKAVAGLVVQHQYPKGTIIYLAGDQVGHFMILEHGQV KLSQISESGKEQLLKVMQPGDFDGEAALFSHDQRNVTATALVDSNVCQIDQDAFQSLLKS SPQLAVNLLTTMSQQINNLQEEKTVSSTSDVAGQLAKYLLETSASLHESSFKLPLKKKDI ATFIGTTPETISRTFKQLIADGVIKMTASLVEIVDQDRLTDIV >gi|238617817|gb|GG669604.1| GENE 737 778354 - 778590 99 78 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKIGIHFKTASGKREFKFQVSNQPFLIPFNKKIRTSKGAAGSKLFLIQHPLLYTETYSLK QCLSIDPGLLFQPAKRSF >gi|238617817|gb|GG669604.1| GENE 738 778568 - 779236 616 222 aa, chain - ## HITS:1 COG:L0228 KEGG:ns NR:ns ## COG: L0228 COG0819 # Protein_GI_number: 15673761 # Func_class: K Transcription # Function: Putative transcription activator # Organism: Lactococcus lactis # 4 219 3 218 218 194 49.0 1e-49 MTTFTNQIHELAKPLWLRSAHHPFIKQLTSGDLPLSTFRYYLLQDRYYLSEFGKLHDKIA DQLTDKTAIQFLRDGAEGLKNGEIAVRKGFFTQLNISKEEIALTPIAPTAYNYVNHMYAA LYQGTPQRAIAALLPCYWLYNEIGQALIRQGSPVGLYQQWIETYDSDGYTDSVNKMIQLT NRAAEQVDDAERQEMTTAFIRSSAYELGYWGMSLRHENWDSL >gi|238617817|gb|GG669604.1| GENE 739 779786 - 781393 1556 535 aa, chain + ## HITS:1 COG:CAC1344 KEGG:ns NR:ns ## COG: CAC1344 COG1070 # Protein_GI_number: 15894623 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Clostridium acetobutylicum # 1 532 3 533 534 623 55.0 1e-178 MDESRVRDEIVSGNISLGIELGSTRIKEVLVTSDFQTIASGDYLWENELDNGIWTYPIEK IWDGIQTSYATLALEVHDKYGVDLKKIGSIGVSAMMHGYMAFDKNGELLVPFRTWRNNIT GQAAESLTKLFNFNIPERWSIAHLYQAILNKEDHVKNIDFLTTLAGYVTWKLSGERVLGV GDASGVFPIDEQTTYYEKGMIDKFNSLPEVQQYPWNLTDILPQVLPAGKKAGELNAEGAK LLDQSGQLEAGSLIAPPEGDAGTGMVSTNSVKKRTGNISAGTSAFSMVVLDRPMRAVHRD IDMVTTPDGAPVAMVHTNNSSSDINAWVGLFGEFAKALGLQLKPDDLYGTLFAESVKGDQ DAGGLVNFAYLSGENITKMPEGRPLFVRKPDAKLNLANFIKTQIYSAFAPLKIGMDILLR EEHIKTNVLVAQGGIFKTPVVAQQVLADALNTPISVMENAGEGGPWGMAVLALFCINRKN GESLEDYLANRVFKDSTKATLYPEPASVQGYDKFIDNYKAALPVESEAVKSMKMK >gi|238617817|gb|GG669604.1| GENE 740 781414 - 782142 875 242 aa, chain + ## HITS:1 COG:CAC1341 KEGG:ns NR:ns ## COG: CAC1341 COG0235 # Protein_GI_number: 15894620 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Clostridium acetobutylicum # 1 232 1 232 233 300 64.0 2e-81 MLEDLKQEVYEANMQLPKLGLVTFTWGNVSGIDRDKGLFVIKPSGVEYDKMKPSDMVVVD LDGKVVEGDMNPSSDTPTHTYLYNHFPNIGGITHTHSPWGVSFAAAKMDIPAVSTTHADT FYGDIPCAPALNEEQIKDAYELNTGKVIVDEFEKRGIDPDAVPAVLVSQHGPFSWGPTPD KSVYNAKVLEVSAEISYHALQLTRDEIHVPQYLLDKHYYRKHGANAYYGQNSAKSKDHAE HE >gi|238617817|gb|GG669604.1| GENE 741 782362 - 783201 681 279 aa, chain + ## HITS:1 COG:L111003 KEGG:ns NR:ns ## COG: L111003 COG3548 # Protein_GI_number: 15672091 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 2 197 122 316 331 97 26.0 3e-20 MKEKLKGRLDVFVDAIIAILITVMVLELPIQINNGVLDYRSLFAAIGIYAVSFCFIANLW YQHAVIFNEVEKISNGVVVGDLALMFFVSLIPTFTRLMAIDTNSMTVVMYGVLDLVISVL FRRIVKTIIHDKYTDKDDMRKLYNVIYGTAFLESWISYLILIVIGYFFPKFSLILFIIIP VRSFIRHASDNEEFSDVGDLGTQERKAFIELTPSQQRTFRRLAHDYRRKTRSIGNQPDAQ KQAWQDFSSQIQEKLNMSAGDAMKWDHQNNQHDHHNQRR >gi|238617817|gb|GG669604.1| GENE 742 783300 - 784040 771 246 aa, chain + ## HITS:1 COG:SP1365 KEGG:ns NR:ns ## COG: SP1365 COG0463 # Protein_GI_number: 15901219 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 7 218 5 214 328 100 30.0 3e-21 MANHAPLVTISIPAYNLGSYLEKTLNSVFKQTYQNFEILLVDDASTDHTAEVIAKFAEQD DRIKPHFFKEHEGVSKARNYAIDNAKGDIIVFVDGDDLLDPTYLEVIVSGFSDPKTDLVI VGFNWGWRGGGYNRQPGFEEVTKRRAYDSINYRGDGIGGYTWNKGFKMSIIRDNHIRFDE SLDLAEDLLFTADYMMASHKFLFYDVPLYNKVNRGNSIIHSATYQMRAKEQVVRRHIDEM GMKLMP >gi|238617817|gb|GG669604.1| GENE 743 784252 - 785556 723 434 aa, chain + ## HITS:1 COG:BH0021 KEGG:ns NR:ns ## COG: BH0021 COG1686 # Protein_GI_number: 15612584 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus halodurans # 15 431 7 443 444 172 28.0 1e-42 MEVTFIVRGTSRLTKLMAVILVLTCVIAALVPSATAQAKSKKLKYKFEAKEIYVMDAKSG QMLYQKNSDQRRPIASLSKLMTLYLTKKAIDQHQLSWNQKVPVSKPLIKMSKSYELGTFK IKRSKQYTVKQLYQAALIASSNSSAIALGELVAGGSNTKFINLMNRQAQKWGIDAHFVSS SGLDNTDLTTYKLQVPGTGKKAQNMVSAKAISTVAAKVLGEFPSITKWSRKPSMKVGNQV LVNSNRLLKGDAFYKKSEHVDGLKTGFTDTAGLCLTVSFWHKGRHLIATIIDSNTIFSSM EKLVRAIEKNYTTETHLIHQNIFTIGNRKVSASPQDSRATIWKTESSKPSISDSYEPTTQ KLPVKKGSTVGNVLVKVGNSTATVPMLATQSVRAPKTIVKETVKHRSLFSKIGDFLGNLI SGLARVVNQIFKHL >gi|238617817|gb|GG669604.1| GENE 744 786228 - 787508 1394 426 aa, chain + ## HITS:1 COG:AGpA77 KEGG:ns NR:ns ## COG: AGpA77 COG1653 # Protein_GI_number: 16119286 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 17 381 9 369 419 108 26.0 2e-23 MNFKHVVKRFVGLISIMSVALLFAGCSKSAAHKVTHITYWHVNAQTLGGASVDKLVKKFN DTHKTIKVTAKYNPNMYQGLMQNLQSAQASGKVPDIVQIGWAFTNYFSDNFKYMTPTDAA QKFDKNKDTITKNFSNQALSFAKNAKGKLVGLPYSLSTPILYTNDSMLAKYGIKKSDLST WEGVSKAAKTIKQKSGKYGVYIQEPADTWAQQAMMLSNGAQIKDASGKAAFASSQGEQAY QLYQDMVVKDKTAIHTPWNQGMDDFVNGKVAMAFTTVAQASHIKQSVSFKASAQTAPTFK AHKLTVPVGGSMLSITAQKTDQQKAAWTFEKFMYQNDSLLTWDKGTGYLPPTKTALDSSQ FKTYLAANPMIKPAVDELPNAVPWTSFPKNGLQAEQDMIDARDKILSGSSVSSTLKSTQE KINDQQ >gi|238617817|gb|GG669604.1| GENE 745 787495 - 788439 735 314 aa, chain + ## HITS:1 COG:AGpA78 KEGG:ns NR:ns ## COG: AGpA78 COG1175 # Protein_GI_number: 16119287 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 27 306 38 315 323 133 28.0 5e-31 MINNSSQVQNKIASRSGPEITGRFRYRLKPLMYLLPSALLLFVFIVIPIGYTFYLSFFNW NLIAPTKEFVGLQNYISVFTDPTNQKVMLNTVIYIILLLILNFIFPYLISLIVNFFIGKM KGAYKVLFFIPSLFSLVVGAMLFSWILNPVSGPAALMLRNFGMKLPQWTNSGSMAIIVIC LITNWKVFGYNFILLLTGLGAVPRNILDAAALDGVPKWRVIWNIVLPMNRGVAIYVLILT IVQGLQYVFTPLNVITQGGPYYGSSNILYHTYLNAFVLYKTGSASALATVTFMIFLVLLF VEIKFVEGRNRDVE >gi|238617817|gb|GG669604.1| GENE 746 788429 - 789250 524 273 aa, chain + ## HITS:1 COG:lin0219 KEGG:ns NR:ns ## COG: lin0219 COG0395 # Protein_GI_number: 16799296 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 16 273 22 281 282 149 32.0 8e-36 MLSERRHIGWHVLLLLICLCVIVPVLFMISNSFKTLQESYHSILQLIPSHPTLSNYRTLD KQINILRMVGNTFLMATLVTLGKVLTGLLAAYGFLNFHFKGKRVVYFLFVATIFVPFTTV MIPNYLVISKMNLLNNVLGVALPQMCDATGIMLFLKAMERVPKSLTESAKVDGIPDRRIF CNIIVPLLKPNIISVGAIFFINSWNEYVWPTLILKDKSSFTLPLALQNYISSEGGTNFPL AMALAVIMIVPPLLIYIVFQRYILSSISNSGLK >gi|238617817|gb|GG669604.1| GENE 747 789261 - 790379 841 372 aa, chain + ## HITS:1 COG:mlr7224 KEGG:ns NR:ns ## COG: mlr7224 COG3839 # Protein_GI_number: 13476018 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Mesorhizobium loti # 8 312 4 314 381 270 43.0 4e-72 METNGFSVELKDVSKSYNKKTNVINEMNLSVRPGEFLVFLGPSGCGKSTTLRMIAGLENP TGGHILINGHDSAAMTSRQRNIAMVFQDYALYPNMTVYQNLEYALRVRKVPKKTRQQRLS TILASLNLSDYKDRYPAQLSGGQKQRVALGRGMAKKSNIFLLDEPLSNIDVQLREKARDQ LLQLHAENGQTIIYVTHDQQEAMALGDRIAVINDGKIQMIDTPDNLYRHPTNLFVAQFVG TPQINILPVNFSNHQLTGVDGTVISRPGKNIRANLDEDQSYLLGIRPENVHLHDEQVSGS FPVEVQTIVDYGRYKQLTCKAFGEKFIKAVVNQWPKNATGTACATLDESAMLLFDPNTNQ NVLDAQSNYVLE >gi|238617817|gb|GG669604.1| GENE 748 790385 - 791254 662 289 aa, chain + ## HITS:1 COG:mll3631 KEGG:ns NR:ns ## COG: mll3631 COG1409 # Protein_GI_number: 13473133 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Mesorhizobium loti # 5 200 49 239 305 99 35.0 7e-21 MVQCKIVQISDTHLTPAGAKPANHQRLDPEEKLRTVFDDIYNSNVDPDLIVISGDLIHEG DAEAYADFHHMLDQEQERLMAPIKVILGNHDRTDQFYKGFLGKKRVATRYYYHESLEGLE CYFLDTKCGDIEQGYLDQTQLHWLKNQLQEYQRPGIIFMHHPLYGPPLQQMRYSILQNGD DLLNVIDHTYVKAIFSGHVHFANSYVVDGILNVVADSTAYHINCANPHEHFVTDGTAYNV ITVDGDDIGVEQRLLYLGTKTINAFKIPNTDFVDKKILTRAWSNVLSKE >gi|238617817|gb|GG669604.1| GENE 749 791265 - 791795 362 176 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|28378935|ref|NP_785827.1| ribosomal protein acetylating enzyme [Lactobacillus plantarum WCFS1] # 1 172 1 172 184 144 40 1e-32 MFIHKVNETIALKLPEKQDANSLLEIVNTNRAEFGRWLPWAKEIFSINDERAFIKDGLQR MAAGTFWFAIILYQDEIAGVLDLHQINHENRRCQIGYWLAGRFQGKGIMTASVREVEAIA FHDLNMNRIEIMADEHNQKSRNVAERRDFHLDGILKQYAFYNDQFRDMALYSKLRQ >gi|238617817|gb|GG669604.1| GENE 750 791870 - 792502 496 210 aa, chain + ## HITS:1 COG:Cgl0917 KEGG:ns NR:ns ## COG: Cgl0917 COG4912 # Protein_GI_number: 19552167 # Func_class: L Replication, recombination and repair # Function: Predicted DNA alkylation repair enzyme # Organism: Corynebacterium glutamicum # 14 208 26 206 208 137 40.0 2e-32 MFQMIGNLQNQPYMEKYMRNQYRFLGLKTPDRKAQSKEIVTASKKWPIARVFSTITALYQ RDEREYQYVAIDIAHVNVKRLTFSDIDRLTAYIQKKSWWDTVDSWRKTFGQFVRLHPEEK RRVFNLFYQHENFWMRRIAITLQLLEKETLDKELLTKAIEYDINTEEFFIQKAIGWSLRN YSKYNPEWVKTFIAAHELSKLAVKEGSKYL >gi|238617817|gb|GG669604.1| GENE 751 792670 - 793224 355 184 aa, chain + ## HITS:1 COG:L12334 KEGG:ns NR:ns ## COG: L12334 COG1396 # Protein_GI_number: 15671989 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 1 104 1 106 107 72 38.0 5e-13 MKIGKVLQVQREKRHWSQAELAEKLSISRQSISKWEQEVALPSFANVVAISDLFKISLDD LIKGDDKLMDKLSRNDKMRPVTKILLWAFGFAISIYVLLQVLHIGVADVWNWVEFPLFVT FIALLFTINWRQLNRAFSKPTIILGIIVLTLFLVPEIYGFVHEAVSNAMAYYQGYQDGFY NFLE >gi|238617817|gb|GG669604.1| GENE 752 793297 - 793488 228 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508606|ref|ZP_03938655.1| ## NR: gi|227508606|ref|ZP_03938655.1| hypothetical protein HMPREF0496_0769 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0497_0707 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0519_1500 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0497_0707 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0519_1500 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0496_0769 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 63 1 63 63 89 100.0 6e-17 MDENLKITLIGLLTLIIGTIFASIVASFGVTTVLPGLLSFLIAAALVFLGFRFTDHHHLA SRH >gi|238617817|gb|GG669604.1| GENE 753 793836 - 794027 81 63 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAYVCLILKIKPVAIICRRVLSYLFKSWMQKFRFNDPNDPDIDSHYKSHRLTPCIKQSAL ISD >gi|238617817|gb|GG669604.1| GENE 754 794051 - 795562 1055 503 aa, chain + ## HITS:1 COG:CAC0528 KEGG:ns NR:ns ## COG: CAC0528 COG0488 # Protein_GI_number: 15893818 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 494 1 488 492 402 42.0 1e-112 MGTIQIKNLSFRYDGMVNHIFDQFSLSIDESWKLGLIGRNGRGKTTFLNLLLGKYPYHGE IQSNLRFNYFPQPITDSTKNVVDVLLAVSGLNESEVWKIQLEMDQLGLTDDLLSRQFSTL SPGEQTKALLAAMFTDKETFQLIDEPTNHLDIAGRQVVANYLKSKRGFIVVSHDRYFIDQ VIDHVLSIDRAKIQLFDGNYDTWQREFDRENLSEKNERAHLQTEIKRLSATASQVKQWAG NAENKKSKKAYGGQSNVNLDKGFLGHKAAKVMKRSKSTLKRTESAIDEKKSLLRNIDDVA PLTLNYKQPHQDHILLLNDFQVQRNHNILNEPITFDLTKGQRLVLEGPNGFGKTTMIKAI LGEKRLIARGSLSFSRTVKVSYLTQEFETLSGSIEAYAKHHDVELPVLLNMLKKLGFERS AFTEDLSELSMGQKRKVSLARSLCEPANFYIWDEPLNYLDVITRRQIQKLILKVKPTMLL IDHDQDFVDAIATELPIELKKYR >gi|238617817|gb|GG669604.1| GENE 755 795628 - 796107 255 159 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508608|ref|ZP_03938657.1| ## NR: gi|227508608|ref|ZP_03938657.1| hypothetical protein HMPREF0496_0771 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0771 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 159 11 169 169 322 100.0 7e-87 MGDKTIEYRTWLPGKVSTFLLVSTATPSVTDFGWGLPNGYALAIIKIDAVSDNKSHGSYS WHVSVENLVKPFPVKGRLHFYQVDDAKIETLPHLLDSLMVYREDKGSKKNGNFVEQYVNP LLKIGYGQMPKKYQKIIQRTGDWHVAAETWYKSRNSGTH >gi|238617817|gb|GG669604.1| GENE 756 796199 - 797632 1090 477 aa, chain - ## HITS:1 COG:L114827 KEGG:ns NR:ns ## COG: L114827 COG0493 # Protein_GI_number: 15673267 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Lactococcus lactis # 1 475 1 479 479 573 57.0 1e-163 MADPRGFLKYPRKDNPMRPIMQRVKDFNAMELDLSDADRREQAARCMNCGIPFCHHGVFF GGGRAVSGCPNDNLIPEWNDLVYRDQDRRAFERLSRTNMLPDMTGRVCPAPCEVSCVQAL NGPGITIRNNEKFIIEQAFKNGWVVDSGKPLRRTGKKIAVIGSGPAGISAAWRLNQLGHS VTLFERDDRFGGFLMYGIPNMKLPKEVVQRRINTLSQVGIDLVPNTEVGKDISAEELKKE FDRVVICTGARQARDLNVKGRDLSGIYQAADFLKIATKEVLKDGTKANNRLKGKHVLILG GGDTGNDCIGTAIRQGCAGITQLEITPALPKERTSKNQWPEWPMVLKTGYGQKEAKALFG NVTEYSATATAFFGENGQVKEAEISQVDHFKPIAGTEKRIKADVVVLAMGFTGAEQWLFD QFGITKKNDNYTTNDNQIYVAGDCRRGPSLVIWGIHEGRLCAEKIDASLQTLASAKL >gi|238617817|gb|GG669604.1| GENE 757 797645 - 802108 3290 1487 aa, chain - ## HITS:1 COG:L0119_2 KEGG:ns NR:ns ## COG: L0119_2 COG0069 # Protein_GI_number: 15673268 # Func_class: E Amino acid transport and metabolism # Function: Glutamate synthase domain 2 # Organism: Lactococcus lactis # 375 1169 1 789 791 951 57.0 0 MDSLKDDGKLMYSPKFEHAACGMGFITQVDGHPSHEIVEKALTMLQRMNHRGGTGAEPDT GDGAGILMALPDAFFRDQMAKYELTLPKSGDYAVAQLFLPHDAQEKASMLQAVTSQIDEA GFPVLWTRNVPFVYENCGPAAQQSMPGFVQVILQRPVDINLGQDFEDHLYVLRRQLEKTF DRQSMYICSLSSRTIVYKGMLHAYQVSLFYPDLHDPQMKSAICLIHSRFSTNTFPSWDRA QPFRFLAHNGEINTLKGAENWMTSHGIEIYDEDDSDSAKLENCMEYLYRHGRSIPQSLMM MVPEAWGSGTEMSDEQRAFDEYNATFMAPWDGPAALCFTDGIQVGAFLDRNGLRPSRFTL TKDNQLVVASESGVVDVDPSDIVDKGILAPAEMILVDTSTGRISKTDELKRDCAEAHPYQ QWLNANRLTLANLPEVKPEASISKDSLKKLWLRNGYTHEVIQTALIPMAQNGGEPVVAMG FDSPLAVLSKKPQSLFTYFKQSFAQVTNPPIDPLREKVVIGTFGFLGRDGDCTKDSAENC HKLKIDSPILNDQEYAKILSLDLPALKVAKLSLAYDLADTPDRLAHVLKDLFTQAENAID SGATILVLSDRPVADNQMTIPVLLAVSGLHNYLVRQGKGTAASIVVDTAEACEIHHFACL VGYGAAAIHPYGAFATLRERGLENHLEDYCHASTKGIIKIMSRMGISTTAGYQGAQLFEA VGLSDAVVEQYFTGTPTRIGGISLNQIENEYYRKYKLTFSNHSVDDLPSGGSFQYKVDGE EHLYNPTSIYQFQKAVRTGDYQEYQKYTAEMNKEAKENPVTLRSMWNIETNDNKPVPLSE VEPVSSIVKRFKSGAMSFGALSEEAHETIAIAMNKLGARSNSGEGGESRNRFHVGADGLD RNSKIKQVSTARFGVNTEYLMSAEEIQIKMAQGAKPGEGGQLPAGKAYPWVASIRGSIAG VQLISPPPHHDIYSIEDLAQLIYDLKQVNPYAKINVKLVSSTGVGTIAAGVVKAGANTVV ISGYDGGTGAAPRNSTRDCGLPWEMGLADAHQTLALNKLRQRTTLEVDGKLLTGRDIAIA IMLGAEEFSFATLTMVSIGCVMMRKCNLNTCPVGITTQNPELRKLYSGRPEHVINMMHFL AEDLREQMAALGYRTVDQMVGHGEHLKPRYVPSGKSKTLNYDRMLNKTITIDRKKENPFK PKYDWPDLDRFAETSLKNQNSTTINLPINNVDRAVGTRLGGWIGAHFGNYGLKPGQLRFN YHGTAGQSFGAFITQGLEIKLVGEANDYVGKGLSGGRLIVAAPHQAKELYTHSPIVGNVA CFGATGGEAYFNGRAGERFCVRNSGANVVVEGVGNNGCEYMTGGVAVILGRTGRNFAAGM SGGVAYVYDWTHNFEKNCNRDLVDLYHLDEAGDDSILQELLKKHVQYTDSETARKILDNW EVEKHTFVKVYPRDYHKMRKLIREYTKPGISEEKVIEKAFYTATSQD >gi|238617817|gb|GG669604.1| GENE 758 802499 - 803308 847 269 aa, chain + ## HITS:1 COG:L34806 KEGG:ns NR:ns ## COG: L34806 COG0396 # Protein_GI_number: 15673775 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, ATPase component # Organism: Lactococcus lactis # 1 255 1 251 256 335 68.0 7e-92 MATLKVTDLHVAVEDEETKKRQEILKGVNLVINTGETHAIMGPNGTGKSTLSETIMGNPN YHVTQGDITLDGESILNKKVDERARAGLFLAMQYPVEIKGITNLEFMRTAVNATREKPLP IRKFLKKLDENLKVLNMSDEMTERYLNEGFSGGEKKRNEILQLMMIQPKFAILDEIDSGL DIDALQVVAKGVNHMESPDFGTLMITHYQRLLNYIHPDQVHVMMDGRIVKTGDASLAEKL EAEGYAGLKDELGLDVNLVDDDVSVGGGK >gi|238617817|gb|GG669604.1| GENE 759 803310 - 804602 1146 430 aa, chain + ## HITS:1 COG:SP0868 KEGG:ns NR:ns ## COG: SP0868 COG0719 # Protein_GI_number: 15900751 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pneumoniae TIGR4 # 22 424 15 418 420 394 49.0 1e-109 MLSTKARKLNPALLKQARFDNEPEWLTNLRDEAWKQVDKLTLPVFDKVDYHSWPLLDFTE TEEQPTGDVTSLLDPTENYHFVSVGKKTIKNDLSDDLKSKGIILTDMKTAIRDHSETLSK YLFQKAVKYKENRLTAVNAALMNGGTFLYVPDNVDIKDPINLMAVQDSRVKENFVNHTLI VAGANSHFSVLQRVSTIGEQTNPAHVTVEIIAEDSSYVKFSALDTLAKNTYAYYNRRGYL ESSARIDWTMGVLNDGHTVADFDSDLMGDGSHTEMQTVALSTGKQVQGLDTQVTNYGRHS EGNILQRGVLLDSSTLIFNGVGKIIHGAHGAKAQQENRVLMLSPKAHGDANPILLIDEND VIAGHAASVGQINKKQLYYLMSRGLSKKVAKRLVVRGFLGVVLRDIPVADVREQMVEMME RKLSNEQGTE >gi|238617817|gb|GG669604.1| GENE 760 804583 - 805839 1091 418 aa, chain + ## HITS:1 COG:SP0869 KEGG:ns NR:ns ## COG: SP0869 COG0520 # Protein_GI_number: 15900752 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Streptococcus pneumoniae TIGR4 # 9 407 8 404 408 538 62.0 1e-152 MSKGLNNSRSDFPILDQKVNGEQLVYLDNAATTQKPVSVLNALIHYYEHDNANVHRGVHT LAERATEEFEAARDKVAAFINAKSRKSVIYTRSTTEGLNWIASSFGNSVVNGGDEIVISE LEHHSNVVPWQQVAKNQHATLKYIGLTADGELDMADAKKKITDKTKIVSIAHASNVMGVI NPIKALTKLAHQHGAYMIADGAQSTPHLKVDVQDLDVDFYAFSGHKMLAPTGIGILYGKP EILDQMAPAQFGGEMINEVHEQAADWKESPWKFEAGTPNISGAIALGSAIDYLNNLGMDN ISAYEQEIVDYTLPKLLQIDGITVYGPHDPAKHTGVLSFNLKGLHPHDVATGLDMDGIAV RAGHHCAQPLMEYLSCEATCRASFYFYNTKEEADRLLDGLNEVKEFFANGIGKAERTL >gi|238617817|gb|GG669604.1| GENE 761 805808 - 806263 476 151 aa, chain + ## HITS:1 COG:SPy0289 KEGG:ns NR:ns ## COG: SPy0289 COG0822 # Protein_GI_number: 15674463 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Streptococcus pyogenes M1 GAS # 1 148 1 145 159 124 44.0 7e-29 MGLAKLNELYKTVIIDHAQFPRHKGELADPTGEKRLKNPTCGDVIKVSVVVKDGQINDVA FDGSGCTISQASASLMTTVLIGKDVKTARKLILAFSKLISGDEIDDEDEELLGDAAIVGT VAEFPTRIKCAALAWHAMDEVLNEEGSGASD >gi|238617817|gb|GG669604.1| GENE 762 806256 - 807659 1238 467 aa, chain + ## HITS:1 COG:SPy0290 KEGG:ns NR:ns ## COG: SPy0290 COG0719 # Protein_GI_number: 15674464 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 467 1 472 472 668 68.0 0 MTDVSEVLDDKDYEFGFHDNVKPVYSTGLGLTEDTVREISKAKDEPKWMLDYRLKAYHAY LKMSEPGFGPDLTGLDLEHMKFFQRATDKQYRDWDDVPQDIKTTFDRLGVPQAERKYLAG SSAQYESEVVYHKMEEQFDKLGIIFTDTDTALKKYPDLFKKWFGKLVKPTNNKYAALNSA VWSGGTFIYVPKGVTVTTPIQSYFRINAEKSGQFERTLIIVDEGAHLEYVEGCTAPTYKS DSLHAAVVEVNVLPNAYCRYTTIQNWSNNVYSLETKRAQALDNAIMEWVDGNLGSKITMK YPSVYLNGEGARGTMLSIAVAGKNIDSDTGAQMIHNAPNTSSSVISKSISKDGGAVDYRG KIKFGRHSDGSFAHVECDTIIMDDQSTSDTIPYNEILNDNVSMEHEAKVSKISEEQLYYL MSRGISEQKATEMIIMSFVEPFTKELPMEYAVELNRLISFEMEGSIG >gi|238617817|gb|GG669604.1| GENE 763 807963 - 808283 434 106 aa, chain + ## HITS:1 COG:lin2362 KEGG:ns NR:ns ## COG: lin2362 COG2151 # Protein_GI_number: 16801425 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Listeria innocua # 9 105 5 101 102 111 57.0 3e-25 MSEIDNRPFKEKAMDVLENVIDPELGIDIVNLGLIYGVELDDEGLCTLTMTLTIAGCPLT DYLNEAIREELTGFDEVKDVYINVVFEPAWSIDKMSREAKLELGIH >gi|238617817|gb|GG669604.1| GENE 764 808510 - 808737 301 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508617|ref|ZP_03938666.1| ## NR: gi|227508617|ref|ZP_03938666.1| hypothetical protein HMPREF0496_0780 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0780 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 75 1 75 75 119 100.0 6e-26 MNEGQEEFLDFFIARTLKDKRDEAEQVLIQAFSEQEHKKLTTANLTDLQNTLFPLVKPEN YDEVEAAMKHFANSL >gi|238617817|gb|GG669604.1| GENE 765 808871 - 809533 534 220 aa, chain - ## HITS:1 COG:L0228 KEGG:ns NR:ns ## COG: L0228 COG0819 # Protein_GI_number: 15673761 # Func_class: K Transcription # Function: Putative transcription activator # Organism: Lactococcus lactis # 5 219 4 218 218 172 43.0 4e-43 MVSITQTMHQQAAPLWQESFDHPFIKELAAGSLPTDTFRYYLKQDRYYLENFGDLHQQIA DHLSDASIKQFLYDGAQGLHDDEATIRREFFQELSITTDEIKATPIAPNAYNYVSHMYHE LNEGSPARAAAALLPCYWLYNEIGKKLVKNGSPVKIYQQFINTYDSNGFTDATNQMINIV DKLGEQADPDEKQKMNTAFIRSSYYELHFWGMAYNHQKWA >gi|238617817|gb|GG669604.1| GENE 766 809715 - 810530 600 271 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0452 NR:ns ## KEGG: Lbuc_0452 # Name: not_defined # Def: DNA/RNA non-specific endonuclease # Organism: L.buchneri # Pathway: not_defined # 3 271 9 276 276 365 67.0 1e-100 MSKRRRKKRRSNSLLSLIVTLIVLVGAWYFTGGQPSNLTDLFNQATQTVTNSTKNVASND KLADLTYHSGESSFVYVNHNKAKLDPQKWQVNKVIYSNLDSLNRTSTGNLAYLESRNLAS DDNRVRQYVEPTAWHQKFVDRQPIINRGHLIAYSISKGINQNGHYNPSDTSGDQNNPKNL FTQTAFSNQRIQTIYEQKIRSALRDGKRVVFFAKPIFRDKELMARGIHLEAISTDRSLDF NVYLFNVQPNVKFDYATGRSTIDRTMKVPEP >gi|238617817|gb|GG669604.1| GENE 767 810641 - 811594 913 317 aa, chain - ## HITS:1 COG:lin0643 KEGG:ns NR:ns ## COG: lin0643 COG4989 # Protein_GI_number: 16799718 # Func_class: R General function prediction only # Function: Predicted oxidoreductase # Organism: Listeria innocua # 1 317 1 305 305 327 48.0 2e-89 MKTVKIGGTHFETSAVALGIMRMAGMDTADAAKTLQAANEAGINYIDSADIYGEGGSEKT FKEALKASGISRDNLYIQSKGGIILDPKRSHDGLVFGARYDFSKQHIIDAVDGILQRMGI DYLDSFLLHRPDPLMEADDIADAFDTLQREGKVRHFGVSNFNPQQVEMVQSWISQRLLIN QLQFNVVHSGMIKGGMHVNMIDDASIDHDGGILEYSRRKHMTIQAWSPFNYGLFAGMYIN DPKYPKLNKKLEELGNKYGVSKNAIATAWILRHPAHVQVLLGTMNPEHIKDSASGADINL TKQEWYDLYFAAGNDLP >gi|238617817|gb|GG669604.1| GENE 768 812050 - 812667 193 205 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|154175107|ref|YP_001408238.1| ribosomal protein L22 [Campylobacter curvus 525.92] # 6 202 8 197 199 79 26 6e-13 MSETTITELINQYGYLAVAFLIAFENIFPPIPSELVLVFTGYLTLTNHLTIWGSIIAATI GAYIGALALYGVGRLLSVAQMEKLVSGKIGRMLRLKPTDIEKAGHYFNKRGGWAILVGRC IPVVRSLVSIPAGMTAYPLAKFSGLTLLGTFIWNTVLILTGHYAGHAWTKLLEMIDQWLI VLLVIAAVMATCYLYYRFTKSKVKK >gi|238617817|gb|GG669604.1| GENE 769 812834 - 815653 1982 939 aa, chain + ## HITS:1 COG:L76107 KEGG:ns NR:ns ## COG: L76107 COG0474 # Protein_GI_number: 15672660 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 923 1 912 918 926 54.0 0 MKWYDKSGDAIFKALSTSRMNGLTDRQVQKRLAEFGPNQLRTKENDPGWKLFLRSFKEPL IIILLVATVLALASAVYDFNVTGDHAHAMASVYEAAAILIIVLINGGLTFHQTRSAQKSL AALSSMRQHHMSVLRNGSWESIAADQLVPGDVVTVKSGDFIEGDLRWVKVSELQVDEAHL TGESEAISKTIVQLPEDTELGDRTNMGYSGSMVVNGNGIGVIVETGMNTELGRISDLMQD IGETKTPIEQSVHSLSKKLMLLAGMIILLTIGFDLVKSLMDNGAISVGDLAGTSSTAIAI AVASIPDAMPVVLSIVLTIGAKMLADNKGLIKSLSSVETLGATTYIASDKTGTLTKNEMT VTRFLTNGQVYQVEGKGYTPVGDFIKTNGEPGSRKDFLRLLEVAVLNNEAEIKPDEKQNW RPFGNPTDVSLVVLGAKQGIKRDALLENQAGHDVDIIRVLPFDSTRKMMTVVIKENNDYY SLTKGAPDVVALRTKSVLMNGIVKKDETVEEEIQQTVLDFAGDALRTIALTQRKVTKDQA LNASADELEKDLCFVGLVGIIDPPREEVKASIKNLSDASVNVVMITGDHAETAKAIAKQL GIIKREDARVITGRELEKMTDEQLSKLALDTRVYARVTPAHKQRIIRTLQAHQQVVAMTG DGINDAPALKAADIGIAMGINGTEVTKDAADLILLDDQFTTIEKSVKFGRTIFSNILNFM RHELTTNVAEVLSLLLGVFLITSPIGEVSEVTPTLTALMVLWVNMISDSLPSFALGYDKP EADLMKQKPRNTRQSILANGMLTRVLLRGSVMGGLVFLAFIWAASQGYSVAQSQTIAFLT LVFGQLWHVYDARSAKTLFDRSPFSNSRLTLAVGFAATSSILATLIPFFNNVMGTAPLTM PMYLGIILISAVPTFVLSGIKKLVIKMRPDRNNEQLDAA >gi|238617817|gb|GG669604.1| GENE 770 815670 - 816455 564 261 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239830964|ref|ZP_04679293.1| Ribosomal protein L11 methyltransferase [Ochrobactrum intermedium LMG 3301] # 20 259 4 242 245 221 44 6e-56 MALGYDDSKILIYGGLSMTDIYDDQSFFEAYSQMPRSKYGLSAAGEWHELRKLFPDFTGK TVLDLGCGYGWHCRYAADHGAKEVVGIDASGKMIDKAQDMTTQPNIHYHIMDMMAIDQLE AKFDVIISSLAIHYIKDYGALIEKIHNALNVHGQLIMSVEHPIFTAEGHEEWMMDSNGRP KYWPVDHYFDQSKRTTDFLGFPVQKYHRTVATYLNTLLNHDFTLNQINEPTPTNEMLAKS QEMRDELRRPMMLIISANRTH >gi|238617817|gb|GG669604.1| GENE 771 816643 - 818121 1403 492 aa, chain - ## HITS:1 COG:BS_yfiU KEGG:ns NR:ns ## COG: BS_yfiU COG0477 # Protein_GI_number: 16077907 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 3 425 8 430 518 384 53.0 1e-106 MGKRHSTFAMIILIIGVFMSALDNGIIASALSTINYSFQVSEVQGTWGITGYTLGMAIST PIIGKLADKFGRRKLFLIEISIFALGSLLVALSPSFILFLAARLIQSVGGGGIFIIASSH VLSTYPKDKQGGLLGALGAVNGIASVVGPNLGSLILNMTGRWNWLFLINLPIALFVIISG YLVIPETKASSIKTIDFKGLVLLSLGILSFMLAITNLQSNALVGSLLRIQVWGLIGLGII LFIMFIRVEKRVSDQVDPFLPYQLLRSQGFVLTLLMGILSGALIGIFVFIPSFVEQRYGI SADNSGIWMSGIGLGSVVGAAVGGSLTSKFGSTKTIVISGSLSTVGFALIAYLSPNPLWF ILSSTIAGIGFGMLMGAPLSVLIAEVASKKDNGVALGTLSVSRQVGITIAPIIYATIIQS GFSSIQMNTSIEQYYRGLQRMTGSNRYQLLRAFYATAQQAYQQMFWLAIIASMVITLIGW YLMRRQHRLLNS >gi|238617817|gb|GG669604.1| GENE 772 818421 - 819608 1196 395 aa, chain - ## HITS:1 COG:BS_yqiG KEGG:ns NR:ns ## COG: BS_yqiG COG1902 # Protein_GI_number: 16079477 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Bacillus subtilis # 4 358 6 359 372 274 40.0 3e-73 MTKQPFLSPFKFNNGLEIKNHIVMSPMTTMTSFYNGMITTDELNYYATRAGGPGMMITGV ANVSDSGKGFEGELSVAHDDMLPGLTNLASVIHQDGTKAILQIFHAGRKSNSAILRGEKP VSASAIAATYPANSETPRALTTDEILQLISDFGEATRRAIKTGFDGIELHGANTYLLQQF YSENANQRTDDWGGSREKRLKFPLAVIETVNEIVKNYADKPFLVGYRLSPEEIETPGIRL KDSLFFVDQIKDKVDYLHLSMGSYKRTSLNDPSNKQSLISQFAEHTHGIIPLIGIGSVTT PEDVNAAMADGADLVAIGRTFIREPQWVQKVAHNDLKSIRTQISPSDMDELAIPPVMQTY LRESFYSVMQFTDDPELHQDYQNSLAPMEGFEKKL >gi|238617817|gb|GG669604.1| GENE 773 819760 - 820134 444 124 aa, chain + ## HITS:1 COG:L133547 KEGG:ns NR:ns ## COG: L133547 COG1733 # Protein_GI_number: 15672316 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 1 114 1 114 115 147 67.0 6e-36 MEKIYHIGVEASLDVIGGKWKPIILCHLGNGPLRTGELRRRIPTITQKMLTQQLRELEED EIIVRKVYNQVPPKVEYYLSDEGKTLRDLLVTMSVWGEKRVKRLQAKGQPVELLSQGHEG YLKF >gi|238617817|gb|GG669604.1| GENE 774 820239 - 820556 383 105 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508627|ref|ZP_03938676.1| ## NR: gi|227508627|ref|ZP_03938676.1| hypothetical protein HMPREF0496_0790 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0790 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 105 1 105 105 199 100.0 4e-50 MVKESTNELIYPIILHHEEIGYSVEIPDINGAWTEGITKQQALDKARNLIGTTLVDQPRL PTPTPLDNIIVLSKSGDIKTTVTIDLAFYQQLMSGKGSQENNNAF >gi|238617817|gb|GG669604.1| GENE 775 820661 - 821779 715 372 aa, chain - ## HITS:1 COG:L188881 KEGG:ns NR:ns ## COG: L188881 COG4767 # Protein_GI_number: 15673730 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Lactococcus lactis # 1 366 1 348 354 203 38.0 6e-52 MSQYVSVIYTAVILFPFLAILITLPILLVNYHRYGALPKWNIFMLYTFVFYIMCAYFLII LPLPTQSFVNQLKTPTHNFIPFTFIIEFFKYNPFSFFHPGTWLAALKAPTVIQPAFNIFL TIPFGFYLHYYFRRNWKQTFLMSFCLSLFFEVTQYTGLYGIYSRPYRLFDVDDLILNTTG GLLGFWIAGWLGKVLPSRESVQSHTLSHSHSVSAVRRLTALAIDLILMSILSSLIALIIQ RHDWVETFMAWFILVIIPEVFFQRSFGMQLVRIRVTNKFGNQAKWYQVILRNVISYGVIG GTFWADSSLLNLTGTAPLSQLSMIHWGIVVTSLVLLFILVDLLIDSFASRHRLFFEHLSG TDTKAKTDHLFS >gi|238617817|gb|GG669604.1| GENE 776 821789 - 822256 293 155 aa, chain - ## HITS:1 COG:RSc1522 KEGG:ns NR:ns ## COG: RSc1522 COG0782 # Protein_GI_number: 17546241 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Ralstonia solanacearum # 8 154 6 156 158 100 38.0 8e-22 MEPHFNKITKAGYQKIKDEINQLENDRPIKIKSLADARALGDLSENAEYSAAKRDLRHLE SRLRFLRKELQYSKIYTPSDNDNVEVGKYVTFEFLDDKSTETYQIVGTPEVDIDNGKISI ASPICAALLNHHTGEIVTIQAPNLTYQVKIKEIKV >gi|238617817|gb|GG669604.1| GENE 777 822587 - 822946 372 119 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0458 NR:ns ## KEGG: Lbuc_0458 # Name: not_defined # Def: aggregation promoting factor-like surface protein # Organism: L.buchneri # Pathway: not_defined # 1 119 1 116 116 130 71.0 1e-29 MNLKKSIVTLMMALTMFGTFQVAATQEIANAQTTSTSATYKSNLSKANLAAKKWIAYHES RGSYSARNGRYVGRYQLSSSYLHGDYSKANQEKTADRYVKARYGSWVSAKHHWQAYGWY >gi|238617817|gb|GG669604.1| GENE 778 823188 - 824495 403 435 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 1 435 1 432 447 159 27 3e-37 MMNNVSVSDKKTPIRNAILGFQHLLAMYSGDILVPLLIGGALKFNATQMTYLVSMDIFMC GVATLLQIRRTPITGIGLPVVLGCAVEYVAPLQSIGKNFGLGYMYGGIICAGLFIIIAAK PFAHMRKYFPPVVTGSLITLIGFTLMPVAFQNLGGGDSTAKAFGDPTHLFLGFFTALIII VLNIWGRGFLKQIAILIGILVGTLTALAMGTVGFESVGQAHWAQLPQFFYFAAPKFEWSS IATLILAALTCMIESTGVYFALSEITGRKLEDRDLEHGYRSEGIAAILGGVFNTFPYSTF SQNVGIVQLSGIKKLAPIYYSAFFLMLLGLIPKFGAIATLIPASVLGGAMLVMFGMVGAQ GIKMLSKIDLNNKNLLIIAVSVGLGLGVTTQPNLFQYLPATVQVIMSNGMVVGSFTAVIL NVLLNHTGLKDKVEE >gi|238617817|gb|GG669604.1| GENE 779 824580 - 826475 1603 631 aa, chain - ## HITS:1 COG:CAC0625 KEGG:ns NR:ns ## COG: CAC0625 COG4934 # Protein_GI_number: 15893913 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted protease # Organism: Clostridium acetobutylicum # 56 630 54 623 625 351 37.0 3e-96 MSNLKKKKILLAGLTGLAVFLMLTPSASAASKKKSAGSDPYGINKILKKLMAKKKVSPKQ HVQLDIFLKPQNQSQLTDEIYNVNTPGKPNFKQFYTPSSFRAKFGQPAKVTGQYKPYLAK YHLKSHVFSNGLIIKVSGSAKNINKAFSTNLETAKYHNNPVQFSSKKPKMPAELADNVLT VLGITNLNTRAGGLAKKNKTKVKKPEKKYAPSKFSDRYQLQPLYDKGYEGQGQTVGIISF AGFKKSDVTHFWKSEGVNSNPNRITIKKISSPSSQPTNDALSQVETTVDAQQAGAIAPKA NVRVYHSNFSDVGMVNVFATAFDENKAGSLSLSWGINEYMTHYLKNNKMLTPVYGQVMNI VMAQGALQGVSTFVASGDSGALGQGIGGKIGPISIPNYSTYAFFPADNPWVTTTGGTTLP FSKKIKKGIKVSVDKERAWGGDYMFNAYAKGRHDLLNNIKLYSYAMAGGGGGISHLYNTP QYQEGVPGVNTFNARQYVSNLMQPRMNPVLVSGTDYGRNYPDVSANADPLTGYDLYDKAL GGWQVTGGTSFVAPQFNGATAVMNSGKGQRMGLWNTQIYQLAQDKDKNPFTVMDSTTNNS NLYYTGQPGKIYNQATGLGTVNFEKLYDSYQ >gi|238617817|gb|GG669604.1| GENE 780 826930 - 827862 701 310 aa, chain - ## HITS:1 COG:SA2330 KEGG:ns NR:ns ## COG: SA2330 COG0583 # Protein_GI_number: 15928121 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 4 299 7 290 295 98 23.0 1e-20 MNSKLLSFLEEIKAQGNMSKAAQALFVTQPYISRVIKNAEVNFGVRLIDRSSHPIQLTYA GEKLLSYLQEENRLRANLDREMTHLSEFKYGHLTIASNDILSNDIYEPILIRFSHKYPKI HAQVIRMNSRDAEKRLLSGSLDFFVGQPLSNPKVEYQPVAKIPLVFIIPESSSLFQAGKY EVDYQSLDFSKLSGEPFIGIPQQDYYQRAVNNYLSDLSVSPEYSLEVPDIHLAANLAINA LGVTIAPEMFIADPFVSDDQKKKLNVVRIPSDALTADFGITYMKTKQTSKPINDLLEIIS QVVEEYTPGR >gi|238617817|gb|GG669604.1| GENE 781 828195 - 830507 1604 770 aa, chain + ## HITS:1 COG:MT3509 KEGG:ns NR:ns ## COG: MT3509 COG1554 # Protein_GI_number: 15842995 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Mycobacterium tuberculosis CDC1551 # 25 723 28 712 786 359 32.0 1e-98 MRIEQSPEFQIHLQNLRSKEPLFLETIYNVGNGHFGVRDSNPLQGNNLDYIGSPGLFING FFDYNDVSYGEKYTGYPENDQIINRVFDPRYIRIKVADEDSAIDHFTVDNIDKNLDMQTG LLHEMFSITTPENRNFNLVVESFSSLSKLNVYGIRYSIIPTNFDEDVEIIKLHNYVNQAT HQQNEDVRVSQSIGEMQLDFIPDNGQPSYLITTFRSQQGIILTFQANENVAPDPKIDYFK DENNQYGYRSKYHAKKGSEKNFEFLFAIGDIHPLVNARVYADQYLSALDNYIRGTSFQSE LMASTQVWQTFWLHSDVKIDGDPQIQLCLRFNLFELNQSAGRDENTSIPAKGLTGNGYGG HFFWDTEMFMLAFFTYTQPQIAKKLLMFRYHTLNIAKQQASEFGLPKGAMYAWRTINGYE SSSYWLAGMAQFHINADIAFAIEQYYTITGDDDFLKKYGFEIILETARFWMQYGNFTELD GKHVFVINKVTGPDEYSALVDNNYYTNVMAQFNLRLAIKYAEKFKATDVTSRLNVSDKEI DRMKQAADLMYLPYDKEKNVKLQFQDFEQLPPMHLDQIDQSLFPLLLHYHPLMLYRYQVN KQADTIMADILFPKGNTKEQLIADYDFYEPITTHDSSLSKAMYAIAASRAGKKEQSYDFF SQAVKTDLLDLHHNTQNGIHAGSLGAAWQGVVYGFAGVVNNAEHFSLEPKLPSAWNSIKF KLRLHNNECLFTIYQNEVHVELTSGKACEVYVYGKKVRVTPQHVKEVCKY >gi|238617817|gb|GG669604.1| GENE 782 830643 - 831122 386 159 aa, chain + ## HITS:1 COG:DR0742 KEGG:ns NR:ns ## COG: DR0742 COG1438 # Protein_GI_number: 15805768 # Func_class: K Transcription # Function: Arginine repressor # Organism: Deinococcus radiodurans # 3 145 22 165 171 94 37.0 6e-20 MKKDVRQAKIEQIINQYTITTQEELMEKLKLSGINVTQATLSRDIREMQIVKQPDSSGNS RYMIFKSGNQNELERMYRMINGTVTEVRQIEFINVIHTQPSYANPLAAVIDDLHMDDVAG TLAGYDTIVTFCPSVKSAENIKNLFLKHSNPDLLITTVD >gi|238617817|gb|GG669604.1| GENE 783 832161 - 833402 976 413 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 [Streptococcus pneumoniae SP23-BS72] # 4 411 5 409 409 380 49 1e-104 MTSPIHNYSEIGKLKTVLLKRPGREIENFTPEMMPRLLFDDIPYLPIAQKEHDYFADTLR DNGVEVLYLEKLSAEALDAGGEEVRNHFLEQMLTESGYAAGSIHDALKEYLGSMNNQDMV VKIMEGVRKNELDFVPKDLVSCAENQDYEFYMDPMPNLYFTRDPSACIGDGLSINHMTFA ARQRESLFNETIIKYHPRFANKGIHVWRDRNHTTRIEGGDELVLNNHVMAIGVSQRTSAD AIQDIAKNLFKDGQYDTVIAIKIPHNHAMMHLDTVFTMINYDQFTVHPGILGKGGQIDTW TITPGKNEGELNLQHDTDLKKVLKTALNLDDLDLIPTGNGDPIIAGREQWNDGSNTLAIA PGVVVTYNRNYVSNELLRKHGLKVLEVISSELSRGRGGPRCMSCPIVREDLKK >gi|238617817|gb|GG669604.1| GENE 784 833696 - 834727 868 343 aa, chain + ## HITS:1 COG:L0109 KEGG:ns NR:ns ## COG: L0109 COG0078 # Protein_GI_number: 15674018 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Lactococcus lactis # 1 343 6 349 354 542 75.0 1e-154 MTKDFRQNVFQGRSVLAEKDFSAAELEYLIDFGLHLKALKKAGIPHHYLEGKNIALLFEK SSTRTRSAFTTASIDLGAHPEYLGQNDIQLGKKESTSDTAKVLGSMFDGIEFRGFKQSDA EILARDSGVPVWNGLTDEWHPTQMLADFMTVKENFGKLQGLTLTFMGDGRNNVANSLLVT GAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTDVWVS MGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLPAFHNTDTQYGKEIKEKYGIT EMEVTDEVFTSKYARQFEEAENRMHSIKAMMAATLGNLFIPRV >gi|238617817|gb|GG669604.1| GENE 785 834855 - 835811 903 318 aa, chain + ## HITS:1 COG:SP2151 KEGG:ns NR:ns ## COG: SP2151 COG0549 # Protein_GI_number: 15901963 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Streptococcus pneumoniae TIGR4 # 3 312 4 314 315 325 59.0 5e-89 MGRKIVVALGGNAILSKDASAAAQQQALMDTAKHLVKFIENGDQLIISHGNGPQVGNLLL QQAAGSTEENPAMPLDTAVAMTQGSIGYWMQNAMNQVLKEKGLNKTVATVVTQVEVSADD PAFTNPTKPIGPFMSKNEADLAKKENPNFTFVEDSGRGYRRVVPSPKPIGVVETDAVNTL VDAGIVPISVGGGGIPVVADGNQLLGREAVIDKDFASEKLAELVGADALIILTAVPNIYV NFNKPNQKKLEHVSVTDLETYIGEKQFAPGSMLPKVQAAIDFVKATGNEAVVTALDNIEG FVNEGSGTVITKKVRQQA >gi|238617817|gb|GG669604.1| GENE 786 836099 - 836785 461 228 aa, chain + ## HITS:1 COG:SPy1548 KEGG:ns NR:ns ## COG: SPy1548 COG0664 # Protein_GI_number: 15675445 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Streptococcus pyogenes M1 GAS # 8 226 6 216 226 101 29.0 1e-21 MILNNKGDYQLYRNKMKRHPEFSPLSDEDLDRVISAMTIKTFHRGQVLFDQGDPRRNYYF LISGVAKSFHWDENGDEQLYLYIRSNKGFPYIGLFEDENYAYSVETMTEVKLAVIPMTLY ETLLRENPEMMVNAIREMSSIINTTETQLQRMVTTSAKCRVWNAIWFLGQQIGDKQDDGT VLIPYPMTLIELSKVSGTTRETTSLMVQQLVAEGKVQYSRKYFKILSV >gi|238617817|gb|GG669604.1| GENE 787 836909 - 838336 1427 475 aa, chain + ## HITS:1 COG:SA2426 KEGG:ns NR:ns ## COG: SA2426 COG0531 # Protein_GI_number: 15928219 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 5 469 6 470 476 429 56.0 1e-120 MKEHDGKLGLLELIGLVVGSIIGGGVFNLMHDMAVGAGAGAIIIGWVITAIGMVMLALTF QNLTMKRPDLDAGVYSYAEAGFGKYMGFNSAWGYWLSAWLGNVGYATLLMSAVAYFLPVF GNGQNIWSIVAASFILWACHFMILRGIESASFVNTIITIAKLIPIFLFLIIVLFAFKLNM FTGDFWFTPSGKFQFADVMKQAKSTMLVTVWVFIGIEGAVVFSGRARKRSDVGKATVLGI ITVILIYMLVTLLSFGVMSRAGLSHLTQPAMADLLQSIVGKWGAMVVNLGLIISVVGAWL SWTMFAGQLPYEAAKEGTFPKLFAKENKNGAPITSLTVTNICVEIFMFSYLITASAYNFF YSVSSAAILIPYAFSAFYQLKYSVNEDHGSGRGKNITIGIISSIYACWLLFAAGTNFLLL MSLLFAAGIPVYWILQKRDNKADKVFGPIEMTVAIIIVIAAIYTIYGLMVGKITF >gi|238617817|gb|GG669604.1| GENE 788 838501 - 839157 687 218 aa, chain + ## HITS:1 COG:CAC0418 KEGG:ns NR:ns ## COG: CAC0418 COG0546 # Protein_GI_number: 15893709 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Clostridium acetobutylicum # 3 216 4 215 216 147 36.0 1e-35 MKHLFFDFDGTIADSERGIVKSIKYFIEKMHLPELTDDQYRKFIGPALISSIRKFYPDLS EDDVFNALKYYQEYYQDDGIFQLKIYPGILEELDALKGAGYHLHIASAKPEVMINRINDH FELGRYFDGEFGATSDERTRITKSAILAYALKETGANKTNSVMIGDRNTDMLGGYENHVK TLGVTYGFGDVPELSAAHASAIINRPEEIHHGVEKLVG >gi|238617817|gb|GG669604.1| GENE 789 839423 - 839761 388 112 aa, chain - ## HITS:1 COG:AF0913 KEGG:ns NR:ns ## COG: AF0913 COG1416 # Protein_GI_number: 11498518 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Archaeoglobus fulgidus # 3 112 2 112 112 71 35.0 4e-13 MHKVVFHIDEAEKWSHTMGNIKNLLDYGNSEGEDYQVTVLVNGDGIMGYLMTTGRKAVKN LGKEFVRFHACKNAMKSHGIAAKDLPDNVEIVPAGVADLIALQEQGYSYIKP >gi|238617817|gb|GG669604.1| GENE 790 839754 - 841190 895 478 aa, chain - ## HITS:1 COG:XF1486 KEGG:ns NR:ns ## COG: XF1486 COG4320 # Protein_GI_number: 15838087 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Xylella fastidiosa 9a5c # 48 469 30 447 451 108 24.0 2e-23 MQNKQPSSSAQQVSSLRYDLSEIRINKTVNELIHMGHDVRDKVPFEKLAQFRQVNRDVVS GIEHVESKLISELLPLRHKRLAASPFSFFRGTDELMAYDLSNQESSNIPVVISGDAHIGN FGFYASPERKLLFDLNDFDESTIGAWDWDIRRLLVSVILAGEQLGLSHDKISSIEKAAVE TYQEILSQCFDDHSALERYYFSTEVESFLKAEADGNSLPKLWEKIKNSAVSRDSEKVVKK FTTIDTQGHLVFRENPPKTVHVSKKRYGQIVDHLQKYLQTVSPDVAVLLSQFHISDIVRH SVGVGSFGTRCYLVLLTAIDGSHLVLQIKEALQTRRFQGFDVTTKYSQSGPDNGERIITC QQVLQRASDPFLGFYHNEDTGRSFYVRQFWDMKESVNLEKMDEEDFANYAKICALLLARG HAQSPTAGIIHGYIGKKKKLANSLVTWSNDYAKQVHKDYQLFKEAFDTGKLAREEANA >gi|238617817|gb|GG669604.1| GENE 791 841336 - 841914 362 192 aa, chain + ## HITS:1 COG:BS_adaB KEGG:ns NR:ns ## COG: BS_adaB COG0350 # Protein_GI_number: 16077250 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Bacillus subtilis # 4 167 8 169 179 118 37.0 7e-27 MKKIYWESIEINHQTFYFTVTDKGLNFVSSPHRHISEIFDFYPNNRYQYQFMYNETITGI YLDEFKEYFDKKRKTFDIPLDFSEIHNELELQVLDALRQIPYGETVTYKQLAETIGRPRA IRAVASAVAKNPFLIVIPCHRVIRSNGEIGEYRGGADAKESLLKFEKEPLAKEPLIKKLP LPRLSQLGKPDL >gi|238617817|gb|GG669604.1| GENE 792 841886 - 842734 589 282 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0475 NR:ns ## KEGG: Lbuc_0475 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 282 1 283 283 391 73.0 1e-107 MLTNKQKKKLLKNRKHQVSPESDYISQMKRYRELFSDFPDVKFLINNVLESDHLIKSKLL PQELPELLLPEDIQDQIFKAINQRFDRDDPEGDKLWNQLSDALPKLDKALRSYRDYLEEQ YGMWAYISGPFVKSLAAYIDHEAVLEIMAGNGYISKGLQDLNVKAYPTDSLEWLSENQTG KHQVTQIEKLDAVSAIEKYQDKVKYVIMSWAPDKESVDLDVLNAIRKADHDLKLIVIGER NGATDSKAFWQQAHIIEPEAAKKLNAHHKPFDLIKDQVYLVD >gi|238617817|gb|GG669604.1| GENE 793 842955 - 843383 478 142 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0476 NR:ns ## KEGG: Lbuc_0476 # Name: not_defined # Def: helix-turn-helix domain-containing protein # Organism: L.buchneri # Pathway: not_defined # 1 135 1 135 135 191 68.0 7e-48 MFPERLRALRRGKHLTLPQLAQLLNEQFPTDEEHQNTPSQIGNWERGVRTPSYVEVQKLA SFFNVTMDYLTGLTENSTYDLARLFISDKSLQFNGQNLDSSDRYEIYQLISGYIHGKTGR TQPPAPTMKQEELDLGMDKSNH >gi|238617817|gb|GG669604.1| GENE 794 843503 - 844465 889 320 aa, chain + ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 20 320 16 308 308 277 46.0 2e-74 MVVVYKMKKRTKIIIACASLVTVVAAGLFGAGLYFYKVAVVPAPKSFLSKSQKIKPDSPL YPAHQWYQSVHKQRWHELSATRHLKLDANYIAADKPTNKTAVVAHGFMGNKDQMFQYAYM FHNLGYNVLLPDARGHGDSQGNYIGYGWPDRLDYVKWIKKVITRKGADSRIVVFGTSMGG ATTMMVSGVKDVPKQVEAYIEDCGYTDVYSEISYQAKQLYNLPKFPLVGIVSAINRVKNG YTFKEASALNQVKKNRRPMLFIHGAHDHFVPTRMVYPLYKADKGPKELLIVPGKGHARSY QNHPKLYTDTVKKFLERYLK >gi|238617817|gb|GG669604.1| GENE 795 844520 - 846148 1511 542 aa, chain + ## HITS:1 COG:CAC1816 KEGG:ns NR:ns ## COG: CAC1816 COG1418 # Protein_GI_number: 15895092 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Clostridium acetobutylicum # 9 516 11 512 514 325 40.0 2e-88 MIYVILGIIACIIGVISGVSLQKKRYAAEIAKAHQEASKLLDRARVKAQKETEKINEASD RQTSDYKESIEEELDSYQADNATRQIRINQRENGLTQTATRLDQVHQDLSKRNNELSELK QSIADLKKQAVDLSKERVETLEKRGDLTSAQAKDQIFDQLSQDLMREKDIELRYQQDEAA VNAPKIAKIMAVDAIQRGPVDMPREHTEHTVQIYDNSTKQKLVGRDGQNIRYIETLTGVD LVFDPDDGSLLHVVTADPIRREIAKMAITNLTVSKQINVQSIEHQVQAAQTDVMNDIRKT GEQTVSSLHIGWMHPDLIKIIGRLKYRTSYGQNVLNHSVEVADIAGLLAAELGLNVKLAK RAGLLHDIGKAIDREVDGTHVELGVKIAETFEEDPQVINSIASHHGDVDVTTPIAHLVAA GDSISGGRPGARSESVEEYVNRLKSLERIASSKRGVRESYAIQAGREIRIMVDPRKVNDQ QNAELANQVKDEIEDELTYPGKIKVTSIRDFKAVAFVGVEKKKAHRANDGKNHKPKKAKS NA >gi|238617817|gb|GG669604.1| GENE 796 846307 - 847863 991 518 aa, chain - ## HITS:1 COG:L99798 KEGG:ns NR:ns ## COG: L99798 COG0737 # Protein_GI_number: 15672285 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Lactococcus lactis # 1 514 1 517 519 459 43.0 1e-129 MKITLLATSDTHGFIEPTNYVDSNANKPFGLEKASSTIKRYINQHQDEKVILIDNGDFLQ GSPMADYVAKRADEVDKASFINAYNQVGYQIGSIGNHEFDYGLDYLNFVMNHSGRQFVCA NIVDHDNEPLLTNPYTILTISGVKIGFLGLTTTSTKKWKNVNDLNDFNLISELSACKRYL PELREKADVVIVVYHGGFERDHTGNWNDINPGENRGYDILKNIKGIDGFISGHQHRKIAS ELFKVPIIQPGSRGEFVGKISFDLSNSTKKITRHSSELLSVADSEPDQEIAKQIAPLSAH LQHWLDKPLSHIEGDLTFNDPFHARIKESAFIEFIQKIQMSKMGTDISATALYNNEAHGF ESPITMRNIITNYVYPNTLVKSKISGADLRAALEVTAKYFDVKHGEVVVNEQFMFPKERF YNYDMYEGIEYTLNIANPVGHRVTKLKYHGKDITDDQVLFVTLNRYRANGGGHYPMYTKD KIVASCDMTISQIILEYLQEHPVVKATNNHNFKIEARK >gi|238617817|gb|GG669604.1| GENE 797 848073 - 850040 1236 655 aa, chain - ## HITS:1 COG:BS_yvgP KEGG:ns NR:ns ## COG: BS_yvgP COG0025 # Protein_GI_number: 16080395 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Bacillus subtilis # 1 655 1 669 670 275 30.0 2e-73 MEAFYLVALLIVATIISNMVYTVFPKIPLTFYQIACGFLLTLLPIFRDYTLYPEFFMVGI IAPLMFNDGRNTDVSHLGNAFHHIMSMAVYLAILTAVIIGTFAHTMMAIIPLSLCFALAA IVTPTDSLAFSSITEGVSLPENVSTVLESESLFNDASGIVVFNLALSSFLTGQFSFSKGL INFIISFFGGLIIGLIAGLAFVKLQTFLVNKSMDTSSVIVPFSLMTPFAIYLISEHLGCS GILAVVAAGIVYGLNQSRLKLTTTNVRLVTGATWSIVSNLLNGIVFVLLGVTLPTVISNI IPLSSTLTIELAGLAFAIYLLMGIVRFLWAKLNFIRLNRDQPSTMKEAFLIAIGGVHGTI TLSMALSLPLTLSGHAFPYRNEIIFVATIVILLSLVVPAFILPNMLPRKKDDDQSSFNHY RTEMVNYSISQVKVQESVPLADRNYVIDMLASQKQGGNIDKTQINDIMNQTHKVEIDAIT GLLTAGKIPQNVANQISRRMMMTPGQRGGFLTKLQFLFRVRFPNKRTRKIKRNMQSVASR FSPELNQKLFDKKVAIRKIVEDTVYQHVNKFLDDIENETNAPSIAFVRNGYNFRHARIDS SDSSDDLRNQLLIQAFQYEYSYVASAFRDKEISRTISDQLNQSVTTDQMVYMEQG >gi|238617817|gb|GG669604.1| GENE 798 850230 - 850625 272 131 aa, chain + ## HITS:1 COG:lin2295 KEGG:ns NR:ns ## COG: lin2295 COG1393 # Protein_GI_number: 16801359 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 131 1 131 131 146 55.0 9e-36 MLNLYVAQSSASSRKARAWLKSHNIAFKERNINSNPLNADEVKQILRLTENGSEDIISTR SNVYKKLNIDMDNLSVSQLIDLLVKYPDLIKRPIIFDDHRLEVGFNEEEIRRFLPRSVRE AELRELESQIS >gi|238617817|gb|GG669604.1| GENE 799 850915 - 851715 604 266 aa, chain + ## HITS:1 COG:SP1245 KEGG:ns NR:ns ## COG: SP1245 COG0561 # Protein_GI_number: 15901106 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 256 6 261 272 154 37.0 2e-37 MVALDLDGTLLTSDKNISKTNENILKQIHDNGIKVVLCTGRPINAIWPYIEQLGLTGEDD YTITFNGALVVHNNDKKELFKRGMAKADFESLHKFAREVYAPLDILNFERVYSISDLKPS MYQQQFKGNIEFVSRSFADLDENDLYSKGIVCDKPDLLDDFSNDLPVRISKQYHIVRSQP QIMEFLAPKMDKTVGLKALLKHFGWNFSNLMAFGDSQNDLGMIAHAQIGVAMKNGTDEVR AISSVIAGNNDDNGVGNYLKSFFSIR >gi|238617817|gb|GG669604.1| GENE 800 851819 - 852775 1144 318 aa, chain - ## HITS:1 COG:Cgl1931 KEGG:ns NR:ns ## COG: Cgl1931 COG1957 # Protein_GI_number: 19553181 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Corynebacterium glutamicum # 4 311 3 309 316 313 53.0 3e-85 MAQKKMILDLDTGIDDAMAIAYAVADPDVDLIGIIGSYGNVYVEDGVQNSLKILELLGAT DVPVYQGLSHSSESDHFDRMPVSAQIHGENGIGDVDLPDPSRKPETGDAIDFFIDAVKKY GKDLILVPTGPLTNLDAAIKKAPEITKEIGNITLMGGAVTVPGNVTNVAEANIQQDASAA NNVFRKAPLTQVGLDVTLRTLLTKKETQQWRDLGTKSGEAFADIVDYYIKAYEVTSPDLH GCALHDPFAVGVAINPDFVQTISLNMYVTTDEKYYGRTTGDPARLSDPNPNVKVAVNADV DAYLNAFMTHLTGLFSKH >gi|238617817|gb|GG669604.1| GENE 801 853049 - 854161 559 370 aa, chain + ## HITS:1 COG:SA0228 KEGG:ns NR:ns ## COG: SA0228 COG2339 # Protein_GI_number: 15925939 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 27 347 44 370 380 240 39.0 3e-63 MKFENKKIGRNFFSLIWTGVRRNYDNLDNLDDSIAKRLGGKENESPVEIHLSRMFSEVFQ KHSKDEADRLFIVGTRSTTPSLRKVSSRPVKPWFFSRIFFVLAVSFAMLMLLLFLFKSNK AIPGLIFIGSLAVPFSLMMMFFEINVYQNISVLQVLTTFLVGGILSLLVTMTFYLMLPIR TDVSIESALIVGVVEELAKCVVVILFINSYKLNYIFNGVLIGAAVGAGFSVFESSGYVSQ YGLMTILTRSFQAVGTHTIWAAIMGGAIILGKARKKPFTIRDFFTNPKFYVFFLITVILH TFWDWDIPNTGLNVSIMQEILDVVVGWFLIYIMIDAGLREVKTLQGQRIIIPKAKKTKKR KPEKNNSKKR >gi|238617817|gb|GG669604.1| GENE 802 854237 - 855235 222 332 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 8 308 2 295 306 90 27 3e-16 MVSDNATYDITIIGGGPAGMFAGFYAGLRNAKVQLIESLTELGGQASALYPEKTILDVAG YPMIKARNLVEQLEEQLKTVETDVKLNQTVNDIKKTTNGYQLITNQETTFTKAIIIATGV GAFNPRKLAVENSADFEGQHLFYSVKNLNQFKNQTILVAGGGDSAIDEALLLEQVAKKVF LLHRRDKFRAMEHSVDQLKASSIETVTPYLIKQLTKTDNGQVVIKAKKMKSEEFTELTVD KIVVNYGFIAQDDALNAWEVHPEIKRGTINVRPNGQTNLENVFAIGDVSKYEGKEPLIST AFGEAPVAVNAIMQALYPDRRGPLHSTAMHKS >gi|238617817|gb|GG669604.1| GENE 803 855392 - 856177 417 261 aa, chain - ## HITS:1 COG:CAC1317 KEGG:ns NR:ns ## COG: CAC1317 COG1226 # Protein_GI_number: 15894597 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Clostridium acetobutylicum # 14 239 9 242 256 112 32.0 6e-25 MKKQNQQTEWGRILLYNILVVLLALASFALVVLAVTNIITLKHGVYRIIFSLIWIFFLID YLIRFKLAKSKKDFLISNLFDLIALIPSHPIFALFRIARIFTIVREYNLLWKLGWTGKFT NGLHRFLYDTGFIYLFSISLVILIGSSLVFASFEHVSLQEALWWAITTATTVGYGDETPH TAGGKIVASLLMLGGIGFLGLLTSTITGFFTNQDAEDERDKSLKHLTRQVEHLSKQVTQM QKTLQEQTGQPKPIVKKKKRK >gi|238617817|gb|GG669604.1| GENE 804 856613 - 858664 1401 683 aa, chain - ## HITS:1 COG:L13927 KEGG:ns NR:ns ## COG: L13927 COG1368 # Protein_GI_number: 15672787 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Lactococcus lactis # 1 670 36 721 722 610 47.0 1e-174 MFAYFVDFRLGITNPFQFFIVLINPLATTGLLLGIALYFKKSRIFYPVAIIISILNTVLL YLNVIYFREFTDFMTVSTMTGYSKVNQGLSGSSLALTNFHDFIYWIDLVVIIILMVTKKI KIDHRPLNRRIGLAVTSFSLLFFAVNLSLGEMDRPQLLTRTFDRTYIVKYLGLDAFTVYD GIKSQHTNDLRATATKSELGDVLKFTRAHYAKPNKKYYGIAKGKNVIILHLESFQQFLIG KKVNGQEVTPFLNKLYKSQSSYSFRNFFHQVGQGKTSDAENMLETSTYGLPQGSLFAQLG SDNTFQAAPAILKQRRDYTSAVFHGNVASFWNRNNVYKEMGYQYFFDASYYDTSGDRSMG YGLKDKLLFRDSVKYLQNLQQPFYAKYITVTNHFPYDLDKEDTRFKTTNTGDDVVDNYFV TAHYLDQSIHEFYRYLKKTGLLKHSLILLYGDHYGISDSENKNLAKALGKNPDDWDDYDN AQLQRVPLIINIPGMKHGYVSNKYAGEIDVLPTLMHLLGISTKRYVQFGTDVFSKHHDQV VAFRNQDWVSPAFTSVSGDIYSNKTGQLLKLTKRQQKQVDKDKERVDKELSLSDSLNEKN LLRFYHPKGFETVDPRKYNYANGYQKEKLIAKKRGKKSTSLYSEQGNTFKDYFTDAPEIH HKSTDSNRIKITNPDASNNDSSR >gi|238617817|gb|GG669604.1| GENE 805 859116 - 859778 545 220 aa, chain + ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 3 207 4 206 224 113 34.0 2e-25 MTKFTLYMVRHGQTYFNIYNKLQGWSNSPLTKKGIQNAVDTGEKLRNVKFVAAYCSDTTR AEETTKEILKRNVASDVKQPTTSPFFREEFYGYFEGNDMDQAWYLAGAPHGLPTFKSIVE KYSIGKAKDYLKEADPFHQAENNEEYWQRLDQGLALIKNNPTIKDGDNVLLISHGNTLLS LVERFGDGQFDVTERPANGSLTKLQFDGDDVTVTDYNVQS >gi|238617817|gb|GG669604.1| GENE 806 859793 - 860227 480 144 aa, chain + ## HITS:1 COG:BS_yybD KEGG:ns NR:ns ## COG: BS_yybD COG0454 # Protein_GI_number: 16081120 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 20 140 18 141 147 90 42.0 1e-18 MVEVKKTNQLNRVYQDAQAIRKSVFVKEQGIDETLEFDGTDGDATHYVAYDQHRPVATAR ATVTGEGVHIQRVATLKMYRHKGFAKQLLEAILNDPKYKGETNFYLGAQETAKGLYETLG FKQYGDPFMEVGIKHVNMKKSVRN >gi|238617817|gb|GG669604.1| GENE 807 860292 - 861401 794 369 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0496 NR:ns ## KEGG: Lbuc_0496 # Name: not_defined # Def: integral membrane protein # Organism: L.buchneri # Pathway: not_defined # 9 353 12 355 367 379 58.0 1e-103 MEETTQVTDIGDYLKLFACTAVMLQTILMFVLTTIPSATNQIGIGMTYNLIKFTAPAFIF GILYTTARKTIATPITYRHYLKQQWHSLFIPTILWTTIYLFITPELQQGHHYHNISSLIW QFINGNAAPHLWYNTMMLQFILLMPLMWLIGRWCGSNSRRGSLTAIVSIAGYLLWISFYD TEVFHGPHMMNWYLLDRLFLSFFIYGVLGVLAWQYRKTVNRFFRAWWPIVCLIFLGSFYW INHELFEFGLPVKLTNAPYYKPSMILYDLSVISLISTLGIFQIDNHSTINKVIHILAEFA YKAFLSNVFWSYLLWYVFGKNLVINHLLIGALVLYTGTWLLSFGSAFAIHLCWQKFCLYT RSYNPRTIN >gi|238617817|gb|GG669604.1| GENE 808 861595 - 862062 533 155 aa, chain - ## HITS:1 COG:lin0412_2 KEGG:ns NR:ns ## COG: lin0412_2 COG0791 # Protein_GI_number: 16799489 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Listeria innocua # 24 147 1 124 132 115 49.0 2e-26 MKVHKQIVLVLVAFFTLLTAGFTTAQAAKADDPSYSTLYSVAKQNLGKPYVWGATGPSSF DCSGFTSYVYKKGAGVSLPRTAQAQYNAEKKVSYSNLEKGDLVFFGGSAVSISHVGLYVG NGKMIDSQNRGVITENVKAPWWHYVGGVHVTDLDD >gi|238617817|gb|GG669604.1| GENE 809 862401 - 865109 2315 902 aa, chain - ## HITS:1 COG:BS_ydgH KEGG:ns NR:ns ## COG: BS_ydgH COG2409 # Protein_GI_number: 16077632 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Bacillus subtilis # 20 887 16 872 885 194 21.0 7e-49 MKVTISKLHKNRVFTLLVWLIIVFIAIISAPSITNTLQSYSQPTFSAKSQPEQAAKLRNQ WGYQLGNSATINIVYENPGGKLTTKQKNTIQTTADKLKEHQSFYSIKRIVTPDTNVSGQA QMLSKDGSTQVVSLDIDAKNDLRILTSELTNQVKVNGLKSYVTSPEIIRDVNNQKTAQIT NLILITLFIASILIVGIYFRAVLASVISFIVLFTSFVTSYSLSLNLAKHFNWAFSQYVPL EIGLATLVLGTIWNIYIYRKLKSVLAVQREARAATKQTIQGLRFPIIMVGGTLTILFALC GFINFNEIQSLWALAVTYPVLVLAVTTLNAVFTAALGESIFWPSSTPKAAMKSHYWKTAT EFSLWQPIAGFLIVLYITLPFIYFYHNSLNFSPITNLTETNQAVKGAHVLQAHFNEGKPT PVTVYLKSKQPLNNEKDLQSLDQLTTKLQHTQGVKNVYSLTQPGGMPIDKYYVSNQLESI GLSSKEATGQLSQASDSLQSNTSKLDLNSLKRQVKQLSSMVSKSNQIVQDSSNLASQVNS AAANSSVSVQRGASKRVRQYQQQINQLNQSLQSVSSGISQLATEGKVIQNYGQNSYNNLQ AYSQQISQIKQQLKKVNQQVTSSTSQLNGIYDYLNGLQKSGGANVYYITKAQLADTDFQQ TLLNYAGKNKKLTMLQVVFKNAPSSKSNIHQVNRLKQQINLQLRGTSLSNATVAMTGEPV TQSIIQSKMTHHFASLLAILVLGILLAVFILSRAILQPLYWTVAFVMSALTGFQLTYLTM HFVASVKQFDWQVPVITATILAAFGAWQIIALGLSYRYTELSLLDWIRPTMASYGQIVRY ILLVVVALAIALTFGASLAMIEIALIVIYTACVFYLVLPMIVSSLGKLAVTLPNKKNILK NK >gi|238617817|gb|GG669604.1| GENE 810 865259 - 866242 656 327 aa, chain + ## HITS:1 COG:L149164 KEGG:ns NR:ns ## COG: L149164 COG3049 # Protein_GI_number: 15673117 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Penicillin V acylase and related amidases # Organism: Lactococcus lactis # 1 305 1 323 323 248 38.0 1e-65 MCTSILQIGQMDGTHVLARTMDWPRLGARPMFCPRQYHWHSVFDDHEYVTKYALLGSGGR HDRRIDASDGVNEFGLAVQKLTFTNGSQLVEEPTEGRIHLAPFELSFYLLSNYKSVQDII DHIDEIELMADKHSLMKYGHSELHFAACDPTGRIVVIEPVTHPIEVIENPLGVLTNSNHF DRQINKLEKYVDFTDAFKSQTVPLNTPRVTTGNVSGKSTPPGSYTPGSRFIRAAYLKERI DLPENEIEAFDNCWHLLDSVNVPKSSAHQPTYSVYRAAVCCESRNYYYQPYHAKSVIKIQ LTDDLIRQTEPIFFQVDDRVDFREISV >gi|238617817|gb|GG669604.1| GENE 811 866335 - 866916 265 193 aa, chain + ## HITS:1 COG:BS_yubE KEGG:ns NR:ns ## COG: BS_yubE COG1705 # Protein_GI_number: 16080164 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Bacillus subtilis # 39 186 45 198 282 117 43.0 2e-26 MLVTVTVILTGVIVRNHRHLENETQIPRVTQSNQRHITIKQRNKFINKISTPAVINFEKN RVVLPSVVIAQAILESQYGTSELYKLAKNPFGIKGSYQGQSMTFYTHEVEKGKTISVLAR FRKYPNLQAAIMDHNQLVHRKFVRQKNLLSYRKTTRLLQKNGYATDPHYAQKLNRLIVKY KLGRYDLKALNDN >gi|238617817|gb|GG669604.1| GENE 812 867031 - 867795 509 254 aa, chain + ## HITS:1 COG:BS_yceF KEGG:ns NR:ns ## COG: BS_yceF COG0861 # Protein_GI_number: 16077361 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Bacillus subtilis # 2 254 4 256 257 184 46.0 1e-46 MLDWVLNLYGPFFDAHNWSTVITSGSDWLIILSLVTIECLLSVDNAVVLAAQTQALPTKV QREKSLFYGLWGAYLFRFLIIGLGTYLIHFWEIKVIGSLYLIYLVYSFFRKTKVVRTKKL ANQKKHRISLFWSVVLQIEFMDVVFSVDSVLASLAISPNPVIVLIGGMIGILAMRGVAEV IMKLMSKIPELQPMAYVLIGIIALKLLLSIPMIDIEIPAPLFGVIVIAAVIITLIIHYVR KDRKKSDERGDNEE >gi|238617817|gb|GG669604.1| GENE 813 867770 - 868108 233 112 aa, chain + ## HITS:1 COG:BH3098 KEGG:ns NR:ns ## COG: BH3098 COG0526 # Protein_GI_number: 15615660 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus halodurans # 3 103 4 104 104 109 42.0 1e-24 MSVEITKNNLQSETNNKLTVIDFWAPWCGPCKILDPILADLEKEYGDQIHFGRMNVDGNQ DVAEQYHVLSVPSLVIFKDGKATEKVSGVYPKEKLANYFNKKIKEQCAEQSD >gi|238617817|gb|GG669604.1| GENE 814 868287 - 868676 358 129 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0504 NR:ns ## KEGG: Lbuc_0504 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 129 1 129 129 152 58.0 4e-36 MSTKVKFSLISLIGYLIFATAAFTLGFLDPNRIGLQWSIFWYIAAALITYYLWFKNVVYK RVMYYARQLKLTKNDLQKFLPNLKKSQDIPDPQRKNYFAPIFNFPLQGLDVLDKELAKEA KEKGIKPFK >gi|238617817|gb|GG669604.1| GENE 815 868838 - 869392 427 184 aa, chain + ## HITS:1 COG:L1005 KEGG:ns NR:ns ## COG: L1005 COG3153 # Protein_GI_number: 15672038 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Lactococcus lactis # 5 176 3 172 173 99 32.0 4e-21 MKFSIETAQREEYSDIRAIIAESYTNQETNTDGDEVDMVDRLRTYSDYQSEFEVVAKDHD HQVIGHALMIPVTIRSSNHSHRIVSIVEVSVPKQYRDQGVGQAMVYELENRAQLAGYPAV SAIDNTDFFYDLGYVAAENFNIFSTMPININANLIKPLTDGGLFKRSGKIYYPEEFYGVR RAEQ >gi|238617817|gb|GG669604.1| GENE 816 869779 - 870369 658 196 aa, chain + ## HITS:1 COG:no KEGG:MPTP_1692 NR:ns ## KEGG: MPTP_1692 # Name: not_defined # Def: aggregation promoting factor # Organism: M.plutonius # Pathway: not_defined # 5 196 12 192 192 118 44.0 1e-25 MILATSAAAVGLFFAGFSYASAATVVTIQSGDTVWGLSQKYNVSVEAINQANNLSNSSVI IAGEKINIPDGSQASSTTQSTSQTASYSQPQYKQATQSTTQSNAATTNNAGSTYSASANT GATDSNSAKSWIASHESGGSYSARNGQYVGKYQLSASYLNGDYSAANQEKVANQYVANRY GSWSAAKSFWQANGWY >gi|238617817|gb|GG669604.1| GENE 817 870564 - 871523 818 319 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2055 NR:ns ## KEGG: Lbuc_2055 # Name: not_defined # Def: lipoprotein # Organism: L.buchneri # Pathway: not_defined # 1 318 1 307 307 212 43.0 2e-53 MKKIFGLGFAAVLLTLGLAGCGRPSLSVNHHQLQPDGLGAVIKGQSRHQTIDYRIDNGKK RTEKTHNGSFALTIPSKATNQKVVLSADDTHQTVKIEKADPLITYSSLQSTYNQAITATA LSKADQKKAMVLQKQGAKLKQQQQAIEKAVAAAKKKLASGDASAAGDLKTQAAKGNALKA QAANLQATGTEVTQAMKKAKNRVKDQLLPTQSPNGIHNLIETKDVTIRTNTDQNQVVGIA LMVPVSAMKNKTDAKKFAISFSVLANSTGADAKKLMKDFKKQTKSSKTSKTTNKALRSNG VDFRIGYSTTTLYIYITKQ >gi|238617817|gb|GG669604.1| GENE 818 871539 - 873437 230 632 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 372 610 264 507 563 93 29 3e-17 MAQKDESNTSSQPTRGPGGGHGPGGPRGVVEKPKNFWKTTARLMHYMSDRIVGLILVLIF AITSVIFQIRTPKILGQATTEIYKGVMKGSAQQKAGFNIGNLPINFDKIVHIIIIVALMY LASAIFSYLQQFIMTLISQKTVYRLRKQMKQKMRLVPIKYYDTHSNGDIMSRAVNDMDNI ASTLQQSLTQAVTSLVTFIGTLWMMFSISWKLTLIAFVTIPLSIVVVGIVAPKSQKYFAA QQKSLGLLNNQVEENYAGQLVLKSFNKEKDTIDKFEEQNDKYYQSAWKAQFISGIIMPLM IFMNNIGYVFVAIIGGIQVANGSITLGNVQAFLQYTNQFSQPISQLANLMNTIQSTIASA ERVFDVIDEEEMKNTHQNRPVEKGTDNIVSLEHVQFGYEESDLLLTDYNLQVKQGQQVAI VGPTGAGKTTIINLLERFYDVSGGSIRLKGVDTRDIDREKLRSHFAMVLQDTWLFTGTIY DNIKYGREDATHDDIIEAAKAAHVDEFVRKLPDGYDTVLNEAASNISQGQRQLVTIARAF VANPEILILDEATSSVDTRTEVQIQHAMSELLKNRTSFVVAHRLSTIQNADNIIVMNHGS VVETGTHNELLAKNGFYADLYNSQFSDNVSFN >gi|238617817|gb|GG669604.1| GENE 819 873437 - 875110 1213 557 aa, chain - ## HITS:1 COG:lin0616 KEGG:ns NR:ns ## COG: lin0616 COG1132 # Protein_GI_number: 16799691 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Listeria innocua # 4 556 21 568 570 558 53.0 1e-158 MAIQVIANLNLPSLTSDIVNNGVATGNISYIWQVGFKMVGFSLLSIAAAVCNVFLAATTS QKLGKNLRSDIYRKVINFSNDEYDQIETSSLITRTTNDVVQIQNVGIIMLRMMLMAPIML IGASFLAYTKDHQLTTVFLVVLPIMALFIGFLLYFAVPMFRAMQTKTDKINRIFREGLTG VRVIRAFRQDQFEQNRFEDANKDYTQNAINVNVLMALAFPVMTMIMSGTNIAIIWFGAKL IGAQSMQVGNLIAFMTYAMQILMSFMMMSMVFIFIPRAQASAKRIQEVLNLHSSLKVQDH PVDVDVKAPKHTLKFDHVTYRYRNAELPALTDIDFEAKSGQTVAIIGGTGSGKTSLINLI PRFYDVESGQVELDGVNVNHMALDKLHEAVSLVPQKATLFTGTLRDNMRYGKDDATDDDI WHALEIARAKDFVKAYPEGLDLHVEQGGGNFSGGQRQRLAIARALVKQSAVYIFDDSFSA LDFKTDADLRAALRKDTHIQQSITVIVAQRIATVADADLILVLDNGKLVGKGTHDDLRKT NKVYQEIIKSQIREEDK >gi|238617817|gb|GG669604.1| GENE 820 875743 - 876711 760 322 aa, chain - ## HITS:1 COG:DR2317 KEGG:ns NR:ns ## COG: DR2317 COG0667 # Protein_GI_number: 15807308 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Deinococcus radiodurans # 1 312 1 312 315 278 44.0 7e-75 MNYRQLGKQGIRVSEIALGSWMTDVSDSDKQDLAAQSIKLAYESGVNFFDCADAYSGGAA ERFLGKTLKQFPRKEIVLSSKVYFPTGSGINDRGLSRKHIMESVDQSLTNLQTDYLDLYF CHRFDPNTPLEETLTALSDLVNQGKILYYGVSEWRPVQILEAQLVIQRLGLHPMSVVQPQ YNMFDRYIEHELLDVCGKFGLGVVPFSPLSQGLLTGKYRKGHKIPAGSRATYQDQIQALL TDDNLDKVETLIKMADELNTDLATFSLAWALRDSRISSLITGASKPSQLQNNLKAIDLTI PDDDFKRIDNLFHFKKFERKIV >gi|238617817|gb|GG669604.1| GENE 821 876868 - 877839 786 323 aa, chain - ## HITS:1 COG:SA1172 KEGG:ns NR:ns ## COG: SA1172 COG0516 # Protein_GI_number: 15926918 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Staphylococcus aureus N315 # 1 323 1 323 325 489 71.0 1e-138 MEVFDYEDIQLIPNKCIIKSRSDADTSIKFGPKTFKIPVVPANMETVINDDLAIWLAENG YFYIMHRFQPEKREGFIEMMHAKDLYASISVGIKDDEYKFIDELAEHNNKPEYITIDVAH GHSDFVIKMIHYIKEKLPDSFLIAGNLGTPEAVREIENAGADATKIGIGPGKACITKLKT GFGTGGWQLAALRLCSKAARKPMIADGGIRFNGDIAKSVRFGASMVMIGSLLAGHEESPG NVISIDGKKYKQYWGSASEKQKGAYRNVEGRQMLVPYRGEISDTLFEMQQDLQSSISYAG GKELKDIRTVDYVVVKNSILNGD >gi|238617817|gb|GG669604.1| GENE 822 877930 - 879216 1031 428 aa, chain - ## HITS:1 COG:SPy0160 KEGG:ns NR:ns ## COG: SPy0160 COG0104 # Protein_GI_number: 15674367 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Streptococcus pyogenes M1 GAS # 1 428 1 429 430 617 67.0 1e-176 MSSIVIVGSQWGDEGKGKITDFFGQNADITARYQGGDNAGHTIVLNGKSYHLQLIPSGIF DQEKYSVIGNGVVVNPKSLISEIDQLKKDGISTENLRISNRAHVIMPYHILLDGLQEKKK DSKIGTTNKGIGPAYMDKYERIGIRIADLIDKDSFEEKLRSNLKIKNELLTKIYDAEPLD FDTIFNEYNAYADRIRPYVIDASYLINNALDENKNVLFEGAQGVMLDVDHGTYPFVTSSN PSASGAAVGTGIGPNRIDNVIGVCKAYTSRVGEGPFPTELKDATGDHIREVGHEYGVVTK RPRRIGWFDSVVLRHSARVSGFTHLSLNCLDILTGIKTLKICVAYKLDGKEIDDYPATLK ELNKCEAVYEELPGWEEDITQAKTLEDLPENARNYLERISELVHVPLATFSVGPDREQTN VVEKVWTN >gi|238617817|gb|GG669604.1| GENE 823 879427 - 880740 1182 437 aa, chain + ## HITS:1 COG:L88187 KEGG:ns NR:ns ## COG: L88187 COG0015 # Protein_GI_number: 15673623 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Lactococcus lactis # 6 434 1 429 431 594 67.0 1e-169 MWKGTIMIDRYSLPEMKQIWSLDNQYAAWLKVEIAIDEAWSKLGKIPVEDVEKIKKNAKF DSKRIAEIEAVTHHDIVAFTRDVSESLGPEKKWVHYGVTSTDVVDTAYGVRFKQANEIIK KDIDHFIDVIAKQAKKYKDTVMIGRTHGVQAEPTTFGLKLARWYSEMNRNKRRFAAVSKE VEAGQISGAVGTFANVPPFVEQYVCDSLGIHAQEITSQILPRDLHADYISTLALIATSLE EFATEIRGLQRSEIHEVEEHFDAGQKGSSAMPHKKNPIGSENICGLARVVRGHMITAYED VPLWHERDISHSSAERIIIPDTLILLDYMLHRFSRIIERLTVFPERMKSNMGLTYGLIYS QRVMLKLIDSGMTREQAYDLVQPLTKQSWDKGIQFRDLVEGNKKITDALNEDQIADAFDY HYHIRHADEIFARVGLD >gi|238617817|gb|GG669604.1| GENE 824 881247 - 882236 734 329 aa, chain - ## HITS:1 COG:BH3241 KEGG:ns NR:ns ## COG: BH3241 COG1609 # Protein_GI_number: 15615803 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 329 1 331 333 139 29.0 8e-33 MRAKISDIAKIAGLSTASISRVLNNQGGYSKETAKRVMKIANDLGYFKDRSASDLARRSN NTIGVIYTDFETNFNDLVIKNIMIEAKKRHLDVILMIAQQNDPDGLTKIVRDMIERRVFA VQFISTHPSPQIIQMLNRAAIFPQVIGDATDHTVSYVSSDDAAIGYKATTYLIEKGHRRI GFVSPNVMTDYVSHLRFSGYRKALKEHGISFKPDWLFEETYSYQTGIHATAHYQKYGDID AVIGVSDEVSWGLLNGFYDLNVNVPGDIALISIDGTALCLQTRPRLTSVTQDFALMGKTA IKQLAPKKADPHRITTVTIPFRIDIRETS >gi|238617817|gb|GG669604.1| GENE 825 882376 - 883755 1147 459 aa, chain + ## HITS:1 COG:NMA2100 KEGG:ns NR:ns ## COG: NMA2100 COG0477 # Protein_GI_number: 15794975 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Neisseria meningitidis Z2491 # 24 454 13 444 451 453 55.0 1e-127 MKIASNTDDQTVTQKAVSKVSNHLPLLSKTTIFAMTFGFFGVNMAFALQQSQLGRIFQTI GTDPNKLGFFFILPPLAGMVIQPLIGKYSDRTWNRFGRRMPYLLIGAPAAAIVLILLPNA GSFGFGYGSAAALWFAAVATLFMDLTSNVCMQPFKMVIGDMVNEDQKDLAWSWQQSFSNL GGVVAALIPFVLAFIGIPNVAAKGEVPLTVRIAFYMAAGVLLITSALTIIKVHEYNPEKY AAYHGIDVNQKDDQPGLLQLLKDAPKIFWEISVVQFFTWFAILYSWTYATGAISLNVWHT SNPSSIGYQAAGNWFGVLTCIQSVAAVLWGLLVQSRTKPSHRKFWYQFGLAAGAIGFISI FFIHSKYLLIIPFVLIGITYLVMNTQPFSLLTEALNGKHEGSYLGLFNCSICLPQIVASI ASFWIFPLVDHSMPGMFLVGGISLILATFSVRLIHSKFD >gi|238617817|gb|GG669604.1| GENE 826 883814 - 885481 1408 555 aa, chain + ## HITS:1 COG:BH2903 KEGG:ns NR:ns ## COG: BH2903 COG0366 # Protein_GI_number: 15615466 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 1 553 1 557 561 634 55.0 0 MTHKWWQNAVVYQVYPMSFQDSNNDGIGDLPGITKRLDYIHQLGADVIWLNPIYKSPNKD NGYDIADYRAINPEYGTMKDFDTLLAATHKHGMKLLMDLVVNHTSDQHEWFQESKKSKDN KYSDFYIWRDPVDGHEPNNWREAFSGSAWTYVPERGQYYLHLFAPGQPDLNWENPEVRQA VFDIERFWLDKGVDGFRMDVINLISKPAGLPDVAGVPTAGTTLDFVADGPRLNEFLHQMN DEVLSHYDVMTVGEMPGSTPEDAIKYTGLESNELNMVFQFQHVNLSPNPDVRLGKWNDQP VKLPELKVALNRWQKALDGKGWNSLYWNNHDQPRAVSRFSNDDPKYRVRAAKMLGTTLHM MQGTPYVYEGEELGMTNGHFTSIDQYEDLESINIYRELVEQDKMIDGPTMLKYLANMSRD NARTPMQWDASQNAGFTKGTPWYALNPNYKEINAEDALKDKESVFYHYQKLIQLRHQTDV IKYGTFEELDPKDDQVYAYRRHYEGKTLLIMSNFTDQTVTRDYDQQKAAKMLISNYDDDQ GTTLRPYESKVYLFA >gi|238617817|gb|GG669604.1| GENE 827 885716 - 886081 302 121 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1455 NR:ns ## KEGG: Lbuc_1455 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 8 121 12 122 122 100 45.0 1e-20 MNKTFVSITMLIATFGLIVLVPVTSQAMSIYSPANPYWNESHWVTLNKTIKVFKIRNIDP QVNSYKVATYTVKKGDHFKLFHSAINVAWGLDSGRFNTGHQYTFEVDQGENNHSWFEFGI H >gi|238617817|gb|GG669604.1| GENE 828 886284 - 886733 311 149 aa, chain + ## HITS:1 COG:SP1915 KEGG:ns NR:ns ## COG: SP1915 COG3279 # Protein_GI_number: 15901739 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Streptococcus pneumoniae TIGR4 # 1 149 2 149 149 112 44.0 2e-25 MKVRVEIDGDLKNKEIVIKAPRYDAETESLYQSIQNLYGQIKPLVFLKGTSEYYLDVNDI LFFETDGRQVHAHTRDDEYVIRYRLYELEDLLTGQFVRISKSAIINSNQVYALTRSVSSI VVRFQNSSKQVYVSRRYYKVLKDKLERRR >gi|238617817|gb|GG669604.1| GENE 829 886738 - 887478 583 246 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0121 NR:ns ## KEGG: PEPE_0121 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 6 246 3 243 243 156 33.0 7e-37 MRKAVRQRWIAGLVFLLAALGWLSVEIGWLNFHISAMTFIVTIILAIILGSCVLSLNVFG SVFSLAFLVMLYAGPLGITHLVPWTILGIALLISIGLSLILRPVIHKQRWKKWQHWFDQD NEWHTPNFIDSTGTDNDSYIHINAEMGDTNRYIESQNFKQADIHASMADVNIYFDKVNIQ GDSAIINIDGYMCDIDITVPHDWNIVNNIDPYLGGVEAQTKTGNPDSPTVYLNGRVSLGD LKVLYV >gi|238617817|gb|GG669604.1| GENE 830 887533 - 887748 185 71 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0513 NR:ns ## KEGG: Lbuc_0513 # Name: not_defined # Def: RelE/StbE family addiction module toxin # Organism: L.buchneri # Pathway: not_defined # 1 71 19 89 89 103 71.0 2e-21 MIRANRYSEKEFKAIETVLLSGQHPDQRYDDHVIKSRKPQRALFIKGNWLLIYDYENDTV RFLDTGRHGDI >gi|238617817|gb|GG669604.1| GENE 831 891332 - 892183 666 283 aa, chain + ## HITS:1 COG:mlr1247 KEGG:ns NR:ns ## COG: mlr1247 COG0657 # Protein_GI_number: 13471310 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Mesorhizobium loti # 37 278 39 293 317 61 23.0 2e-09 MSFMAKRLLKKFKKENYKVAVNHSFLHPNQKATIFTDKSKDIKIYQMNHGQTVTLTPTDN PDNQIMYFHGGAFTVPMNTDQLEMITKIAIESNSLVQIVDFPLLPNHSSTEILESAQEAL DIVYSTELPTFIVADSAGAAIALQLLIKNPTKIAGTSFISPWLDMQLKDPEISAKESEDV MLSLSVLRQIGQQFEVGLNQDNWFDVFDPQNLNIGSIQIFYGENELLTPINLKFIQALKQ ADKASVEVTTFKDGFHDYTLWFKLPETKKTFKEIARFIKDRVH >gi|238617817|gb|GG669604.1| GENE 832 892330 - 892986 499 218 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0515 NR:ns ## KEGG: Lbuc_0515 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 218 1 218 218 333 80.0 3e-90 MAKIQDFNQRFNYLCLSIVINSAGNALAISTNLGSAVWTASAVNLSKWVNIPLGTTLFLY GIVVTIVNQLMIGSFDRRRFVSNLLYTVPFSYLVQFSQWIFDSLGVPTYSFWLRLILDMI GLFCVAMAVSMYSRANLIMHPNDDMAYIIRFKYISGSAVTSQWLSYIPPVIISTLAYLFT GKVFAIGFGTAFALIFQGAMMKWSDTHAFPKLKHHVDL >gi|238617817|gb|GG669604.1| GENE 833 893122 - 893742 333 206 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0516 NR:ns ## KEGG: Lbuc_0516 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 205 1 205 206 291 69.0 1e-77 MEKAYSEVEAERNLEKNRLWVGRFKTTRSFQKLTKPEKVAALYVTQAFVGLAYKYELREP RRYTAKLVRKVLLELFPKRIAATNVFFSSVIPVMRRYFVFLGVQHKISNADTLVKALDSV STKQLLDIHQDQNNWDAHKVKAMAILMGTVDHVDPKRVAAFEEDYNMGVPLRFCFDLGVY RQPKNIILLTEGLRKKFEQILYEKHN >gi|238617817|gb|GG669604.1| GENE 834 893877 - 894080 215 67 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0517 NR:ns ## KEGG: Lbuc_0517 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 67 2 68 68 66 55.0 3e-10 MTIASKNFSNELINAYKSQKLVMLVTDSGHITGTVAAVKDDLAYINQPVKGVTAINLNDV KKVQELN >gi|238617817|gb|GG669604.1| GENE 835 894240 - 894485 286 81 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0518 NR:ns ## KEGG: Lbuc_0518 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 3 81 1 79 79 108 91.0 9e-23 MEMTERQLIQEILNTVDVIYKFVNTDDDKKEYEIVINRQDGDHRPLEEVNKEIKHYFTDA NFSYDEKLNDGGDDIHVDVKR >gi|238617817|gb|GG669604.1| GENE 836 894676 - 896190 1437 504 aa, chain + ## HITS:1 COG:L0014 KEGG:ns NR:ns ## COG: L0014 COG0554 # Protein_GI_number: 15673228 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Lactococcus lactis # 8 500 6 498 498 676 63.0 0 MLTDRPKYVLSIDQGTTSTRAMIFDHNGRKVIEAFKPVKQIIPHNGWVETDPNEIWTSVL NVISSAFIDAGIHPEDISGIGIVNQRETTLIWDKETGEPIYNAIGWQSKQTASLARKLKN DGYSNLIHKKTGLIIDSYFSATKVRWILDHVEGAQQRAEKGELLFGTVDSWLVWKLSGGE YHVTDYSNASRTMLFNIHALRWDDDILRLLNIPRAILPTVKTSSEFYGTTKNYQFYGIEV PIAGIAGDQSAALIGQLAFDPGMIKNTYGDGAFIMMNTGTKPELSDDNLLTTIAYNIGGK VTYALEGSIFSAGTALSWLADSLKLIDNVPESRQAAMNSTDDDEVYVIPAFNGLGAPYWE QDVRGSVFGLTRGTTKDDFVKATLQSIAYGTKDIIQTMEEDTHMHIPALKADGGASRNSY LMQFQADILNIPIQRAADENTTAFGAAILAGLAVGYWKDIDEVKALAEPGRQFEPKMDEN RRNRLYRGWKAAIDATRAYKLTKI >gi|238617817|gb|GG669604.1| GENE 837 896476 - 897183 496 235 aa, chain + ## HITS:1 COG:L85237 KEGG:ns NR:ns ## COG: L85237 COG3548 # Protein_GI_number: 15672844 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 1 181 1 179 188 122 41.0 7e-28 MSKSRLEAFTDGVVSIVLTLLVLTIQIPDAPTWQSLWKVRLIFFAYVVSFGFVAVIWVAH HRLFQLTDYVNDKVVWANIFWLFWLTLSPAVTIWVGQHPFDVVPNLAYVFIFTMWSVSFE ILVRELLKIHRPDSKLARVLRHDRRSLYSDVINVLIFIGVFFVPIIGLIGRFFVTALWVF PYRIPAGVPKAEVKQGETPNIDEKRVQERQQLVKEGIAVEKPKKKHKLFFLRPRK >gi|238617817|gb|GG669604.1| GENE 838 897232 - 897678 495 148 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0520 NR:ns ## KEGG: Lbuc_0520 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 145 1 145 148 173 64.0 2e-42 MQNPFGNGNNDNNDNNDNDPRNLIPIPPNFATVVNKETGQIRIAKVGLSFTALFFQILVP VFRSDWYNFFCMLGVEVIVGMGLSMYLVQPLSITFYTGEYFLGVIWMLIYNMMYFKHLFK LGYAPADQRSKELLISARYLKDKSDNQN >gi|238617817|gb|GG669604.1| GENE 839 897712 - 899094 1154 460 aa, chain - ## HITS:1 COG:lin1815 KEGG:ns NR:ns ## COG: lin1815 COG2265 # Protein_GI_number: 16800882 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Listeria innocua # 7 460 3 457 457 433 50.0 1e-121 MYTNKPQVHVEQGEQLKLTIKRLGINGEGIGYYEHKLVFVPGALPTEKVVVEVTEDLNNF IRADLIEILRKSEDRVQPVDDYANEVGGFELENLAYPKQLEFKRDVIKDSLEKYKPAGYR KYKLLPTIGMDDPIHYRNKATFQIRNDGQKVIAGLYKHRSHTVVDLKTSALQYPLTMKVM RAVVEMIDDLGIPVYDEEKNAGIIKTVVVRAATATDEAQVTFITQSKKLLKKHQLLERID HDLPEVVSVMQNVNPGKTSLVWGEETIHLAGKDKITEVLNNLSFDLSARAFLQVNPEMTA VLYQEAFKALELSGKEKLVDAYSGVGTIGLSVARQVREVRGMDTIKDAVDDANANAIKNG IVNALYEVGEAEKLLPLWIEDGWNPTAMIVDPPRTGLADSLIDTILDITPKKFVYISCNP STLARDLVKLTRKYNVEYIQSVDLMPQTSRCECVVKFKKK >gi|238617817|gb|GG669604.1| GENE 840 899278 - 900126 840 282 aa, chain - ## HITS:1 COG:L66233 KEGG:ns NR:ns ## COG: L66233 COG0656 # Protein_GI_number: 15672250 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 1 278 1 277 281 355 64.0 6e-98 MSLTDTYTLSNGVKIPQVGFGTWQSANGDEAYHAVLAALNAGYRHIDTAAAYGNEESVGQ AIIDSGVSREDLFVTTKLWNADHGYEATKEAFGRSLEKLRLDYVDLYLIHWPNPIDFRQN WQQANTDSWRAMEEFYANGTAKAIGVSNFREKHLDALLETAKVKPMVNQLFINPSDMQPG VVNYNNNHDILTEAYSPLGTGGIFKIPELAPIGRKYGKTPAQVVLRWSLQHGFLPLPKSV HEKYIKENADIFDFNLSNIDMKTIDGFHGKAGLAIDPDTATW >gi|238617817|gb|GG669604.1| GENE 841 900397 - 901254 736 285 aa, chain + ## HITS:1 COG:RSp0589 KEGG:ns NR:ns ## COG: RSp0589 COG1028 # Protein_GI_number: 17548810 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Ralstonia solanacearum # 3 268 6 273 276 238 44.0 1e-62 MSRKVAIVTGASSGIGKQIAKNLHRNGMEVYAVSRKVYQMNELDDLGIHTRHLDVTDYEE VDRVVNQIAKETGRIDVLVNNAGLGVFGPAEEVDLAEGEYEFKVNVFAAMKMIQAVLPFM RKQKSGRIVNISSIDGKIYNLLGSWYVGSKFAIEGISDALRLELKPFGIDVVVIEPGAVK SSWKDTATGKMVEKAAEGPYEKLARLSADFFSLSYKFASEPRVVARMVDRAAFSRRPKTR YAGGAGAKPILFMRKVLPDKCFDSLLTALSKYAQKVLNKQTAFNR >gi|238617817|gb|GG669604.1| GENE 842 901851 - 902102 80 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508699|ref|ZP_03938748.1| ## NR: gi|227508699|ref|ZP_03938748.1| hypothetical protein HMPREF0496_0862 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0862 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 83 1 83 83 150 100.0 2e-35 MVHTLTVTFPTQALSYRFQGTRPNRSISTASGGTPSVVLNLRIIDIAFLVNKDKKKEDPA RLEFATSPNSSPQKEIHIFPLHI >gi|238617817|gb|GG669604.1| GENE 843 902254 - 903042 654 262 aa, chain + ## HITS:1 COG:lin0341 KEGG:ns NR:ns ## COG: lin0341 COG2145 # Protein_GI_number: 16799418 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxyethylthiazole kinase, sugar kinase family # Organism: Listeria innocua # 5 247 6 248 269 193 43.0 3e-49 MKIDLLNTLREKNPIAFNISNFVTVQDVANGINALGASPIMSEEKNEAEAMVKMANSVTI NLGAFTEQQLTQIDTVMTFANQYHKPIVVDPVAVGAVQYRLERCNELLAQKQVNVIRGNA GEIAALAGVEWNAKGIDAGEGAGDLVEIAKKLANKYNCTVVESGKTDIITNGDAVVKVFN ESDLFKLHVGSGDMLSSTIGCFVGVEDDYFEAAQTAVVVFDVAGEVVAKAMDKPLAGSFG PQLIDELHLIDTKTVEKYANFE >gi|238617817|gb|GG669604.1| GENE 844 903090 - 903908 904 272 aa, chain + ## HITS:1 COG:HI0416 KEGG:ns NR:ns ## COG: HI0416 COG0351 # Protein_GI_number: 16272365 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Haemophilus influenzae # 7 264 6 265 269 245 51.0 8e-65 MVNETVQALTIAGTDSGGGAGVMADIKTMQERHVFSAAVVVAVTAQNTIGVQDFMAMPKK MIDEQFASVADDLKIRACKTGMLADVPTVEAVVENLKKYDLGPLTVDPVMIAKGGARLLS EDAISTVREKLLPLADILTPNLPEAEELAGMKINDHDQMIQAAKKLQSMGVKNVLIKGGH QVESKESSDFILLETGHSFWVSSPRVDTKRTHGTGDTLSSCITAELAKGSDVETAIRTGK KYVQATIANGIQVGHGHGPLNHWAKIDKEGDD >gi|238617817|gb|GG669604.1| GENE 845 903908 - 904564 550 218 aa, chain + ## HITS:1 COG:lin0343 KEGG:ns NR:ns ## COG: lin0343 COG0352 # Protein_GI_number: 16799420 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Listeria innocua # 10 213 5 208 214 174 47.0 1e-43 MAMAFKVGMLRAYFIAGTQDIKKSNLTLPEVLTQALQSGITAFQYREKGAGSLSEEKKVD MAHTLRKLCETYKIPFIVDDDVDLALETAADGIHVGQKDERVTKVIQQVGTTMFVGLSCD TKEQVAIANETEGISYIGSGPVYPTGSKADADPVIGIAGLKKLVQSSRLPVVAIGGITEG NISELPQTGVAGASVISMIAQSNDIRRTVTRMRAVFEK >gi|238617817|gb|GG669604.1| GENE 846 904635 - 905489 583 284 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508703|ref|ZP_03938752.1| ## NR: gi|227508703|ref|ZP_03938752.1| hypothetical protein HMPREF0496_0866 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0866 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 284 1 284 284 537 100.0 1e-151 MTTQSTRSLSAQFRKIQQQIDNSKPGKIIANTKLNGNQHRFKVQSHGKSIDFNGPEWLVD SFRQASENGKQLEDKYPAHKEFFERIAKLHWTWIDQMPLNSERIDRLLKLDDHELNQVFV DTLIRDSHNLLNQNLDDLAASLDNGHAKQIKIVKRLIYQAHDNYIVLFNLLFSILEMVTV QKYGQSRTATWNYNPSLNEIKRINEQIKTDRHKQFGRLLELNELDVLSGLYKFFDFNSYH LQTMPYSRHTVEHGKFDPNNYTFTEFMQLVLLSRNIAVSLKGEK >gi|238617817|gb|GG669604.1| GENE 847 905878 - 907449 1350 523 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0529 NR:ns ## KEGG: Lbuc_0529 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 523 1 524 524 742 78.0 0 MKGHFKFAVMTALLFASAGIFGIAANANADVIDAPGSAGSIKQVNAGNVLKDYDEEALNT VNNDTPQGNTSKKYAKYDLDPSGYNYANSYSTISGSSQSNTFKTKWFLPDGFNVSNLQHG NFQSVTMDDSGNVYFVESNGTNTNQGAIVKFNMAKLQQLGVNNDPLALWQAFDYFNPYTT DGTAHNQEYEDAYNQMKGSFDQIKTLTNTLNQNKSWQNNQNNYQNNAQKWYYYWKNKKSK NQKIVKSAKYSYASKQKAKKVVKQATAKMAQWMKSYQMHKKKVANYNKKITSIQNQINTY QSQVDAVKAQNPEMFKYVDIAQTAQLSPEVDIGHGQTLAFNPQNKHIYLAEDNTLTDLKT RDDNNTVLEMDPNTLNPIREYNFKMYHGDSANLQLHTLAFDKSGNAYWGRKYGKGYILFY GRLDENGVSFQASQNMVGNRGGNTNQGMSYNPQNDRVYFVSDDILTSIPAEKVRDSNFTA DDIHYQAFDSKREFESLTFDQDGYGYLLALWPPELMQSTAPLN >gi|238617817|gb|GG669604.1| GENE 848 907762 - 908553 224 263 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 241 1 235 305 90 27 2e-16 MTDSLAAKDLTAGYGHKVVIDHQDISIAQGQITGLIGPNGSGKSTLFNVLNGFESPISGT VTLSGKPISRFSARQRAQQIACLPQRTVIPDGITVFELVSYGRYCRQRGFHHLSQTDRKA INDAIQAVHMTSKADELLTSLSGGQQQRALIAMTLAQDSRILMLDEPTTYLDLTNQLEIL NLLQELNAKFRKTIIIVLHDLNEAARYCHRLVCLVDGHVKATGRPIDVITKAILADVFKV DGDILHDHGCPQIMNCHTLAMPS >gi|238617817|gb|GG669604.1| GENE 849 908550 - 909530 727 326 aa, chain + ## HITS:1 COG:CAC0789 KEGG:ns NR:ns ## COG: CAC0789 COG0609 # Protein_GI_number: 15894076 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Clostridium acetobutylicum # 48 310 56 319 334 122 29.0 7e-28 MIFHKKRVLTGCLLLALGFAVLLDTLGGPKWYGISEFWRPTSKLATQILWDVRIPRVLAA MLVGILLATGGLLLQTISHNPLADPSIIGVNAGANLALIAGELAGLALTVLNAFWLALIG ALLAFLVVIGLSLNKKGFSPLRLLLGGTIFSGFLSSISMAVSFMTNNTQQFRVILAGGFS GANYEQVGLLVLVAIVVVGSVFFFRTEFTLLGLDHQTTVGLGLSFKKLMGIAIALIVLAA GSSVAVGGNIGFVGVGVPQMVNFVHPGSFKANVFPIALCGGIFMLFADLISKAAVSSVEL PLSALSAIVGGIVLFILVAFKKKVVK >gi|238617817|gb|GG669604.1| GENE 850 909560 - 910528 723 322 aa, chain + ## HITS:1 COG:BH1082 KEGG:ns NR:ns ## COG: BH1082 COG0609 # Protein_GI_number: 15613645 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Bacillus halodurans # 11 316 20 330 334 141 33.0 2e-33 MILCTIWIGLLLAVLSFGDIKLNVVEVMKSLFGLSRDFTTNFVVWQLRFPGLLASIITGG ELAVSGLILQILTHNSLADSSILGINAGASLGVVIAMFVSAAVGLHLMSSWLLLAALIGG LTSSGLLMLVGRQQSAIKILLAGVALTAVLNGIILMLELEMNQFDFDKVLVWLNGSFWNL GMPFLTIQLLFGIGLIILVILMVPALNGLTLGSRGAYGIGVNVKMAGNVLMGVAILCATG AVLVGGAISFVGLMAPNIARKLVGQRVTYLLPTSWLLGCCIMMLAQFVATNAFGKTALPV GLVVSAVTMPYFIYLLFSERVD >gi|238617817|gb|GG669604.1| GENE 851 910531 - 911499 680 322 aa, chain + ## HITS:1 COG:lin2073 KEGG:ns NR:ns ## COG: lin2073 COG0614 # Protein_GI_number: 16801139 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Listeria innocua # 22 319 19 312 313 197 37.0 2e-50 MKKKHTYLKVLAVAMMALLFLAGCGKENSGKSANKGSASSTRVIRTASGKVKIPTDPKRI VTNVYTGDVLSLGGHVVGATAIDFASPYITKSQKKGITNLGLTMKPEAVLKLKPDLIVTS NESDVKSLKKIAPVVYIPYGTTGNIEKTATKFGQVLNRQKQARSWIAKFKSESDKQSQRL KKAGINPTKTSIGIYDMQNGKLFVDGAKWGRGGQALVTGLGFKLPASIQKIDQGAGFQQI SLESLKKYSADWLFFTNTTSGKSTNKQAISDLKSNPVWKSLPAVKAGHVVQLPENKMYYF DPTAVYQQLKLVTDAMVRSVRS >gi|238617817|gb|GG669604.1| GENE 852 911819 - 913756 1727 645 aa, chain + ## HITS:1 COG:L119891_1 KEGG:ns NR:ns ## COG: L119891_1 COG1136 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Lactococcus lactis # 1 290 1 290 290 364 63.0 1e-100 MAYLELHDIKKSYYLGSEEFPVLKGLNLSFEQGEFVSILGESGGGKTTLMNIIGGLDSNY TGDVVLNGNSLRHDTNKQLDAYRRQTIGFIFQNFNLISHLTVLQNVMVSLEMTTLSRKQQ EERAHQLLEQVGLKEHVKKFPNQLSGGQKQRVAIARALASDPEIIIADEPTGALDSQNTQ EILELLDQIATDGKLVITVTHSQTVADFGTRIVRLTDGKISEDKQIKEPYKAGNENELTT HTLKFGATLKMALENMRYNLKRNILIIIGAAIGIFSVIVMLGLGNGVQGYINHEIYSQVN PNALQITKNVSSDNTDVNKSNMQTKDKNRLEKIKHVKNVQNGFYVQGGSQLRLGKQTAAI SFMQTFNPTILKKSITRGDAPKGNEILLTKEIAAKLNKKHPYSLIGKKITFYQNTLNKQK RPVTLSKTLKVSGVAKANTGSTSVTYQTMKSIYGSKNISIKPNFLTLEVTGSVENVKPVQ NKIKAFKNSKNKAQYMITGVGGFVDTLNTYINLAVNVLATIAGISLLVSAIMIIVVLYIS VSERTKEIGILRALGTSKGSIRNLFFSEAFFIGLFSSVLAIALAEGLAAIANHIAESGIN YQIMQISTGNILFGLIISIVISLLAALAPAGKAARLDPIESLSYE >gi|238617817|gb|GG669604.1| GENE 853 914436 - 914891 461 151 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508710|ref|ZP_03938759.1| ## NR: gi|227508710|ref|ZP_03938759.1| hypothetical protein HMPREF0496_0873 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0873 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 151 9 159 159 266 100.0 3e-70 MDDKKTISEKQSNQQHPKKSKESKEQVRRVIGGLHIRLEEDGKRTLATDHEFFWKIGKKT GNEGSELVDGFPELGRVAVVETKFGWRPVLVVREQTVTGEAAVKAADDLRHVSRFTANDV HTYHLVRPFKKYLKDNHIQDPRDEKNEKADK >gi|238617817|gb|GG669604.1| GENE 854 914988 - 915404 360 138 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0106 NR:ns ## KEGG: Lbuc_0106 # Name: not_defined # Def: OsmC family protein # Organism: L.buchneri # Pathway: not_defined # 1 136 1 136 138 205 76.0 5e-52 MGKYIVNAKLRKVGAQVDTQTGIHHFLVDEPVAGGGTDAGPNPVQYLLSAVSSCMAITAN DIVRRQPEIKINKFEVKTAGETTKYQDGRSAVTKIQVTIHAETNLNEQDQHTFINQVIKE CTVHETLKHAVPIEIKRV >gi|238617817|gb|GG669604.1| GENE 855 915578 - 917092 1422 504 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 493 41 538 549 296 34.0 8e-80 MQTSELTTLDNTNQATLPEFNTLTNISEGLYRLNSNDQPAPAMATKLVKPTNNGKKYVFH IRKNAKWSNGDPVKAEDFEFAWKRAMNPANNPVYTYIFSGIKNADAIMANKKSYKTLGIR ATGDRTLEITLDHPMTYFNKLVAMPVFMPQDKSFVTKVGAKKYGTNAKNTVSNGAFKITK WTGTNDSYQLVRNPYYWDKKAIKLDRINYKTVKDPNTAHNLFQSDKLDDATISGVTAKSL QKNKDLKRVPKAWTYYLQVNQKSGEPLANQKLREAISLVINRNELTKKVLSDGSEPASSF VSPKTSVDPITGRDFSQETSTSVEPNLQKAKRLWNQGRKEAKISGTLKLSIIGDDQDVTR NVAQFVQGQINQNLPNVKVNISNLPDKAYQNRRTNGQWQLSQWYWLADFADPINYLGILT TNNTMNPGHFSDKTYDRLVASAKKADNQTDYWRDLRQAEKRLQKLTGVIPLYYVKEDHLV NPKLSGVEYHVAGFADYTRARLAK >gi|238617817|gb|GG669604.1| GENE 856 917327 - 917695 306 122 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0621 NR:ns ## KEGG: Lbuc_0621 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 3 119 2 122 126 158 66.0 6e-38 MASINGNEWKAALKSPEEFKSYMTKYFQENKELTGNYETPSYYEYYTVTLDSKEGLVVTL KTGLNQPASSLPFKDVEHLSIEEFRQLILNKKFEDQSETLTDVFTKMMASEPKSRLHKGG KK >gi|238617817|gb|GG669604.1| GENE 857 918374 - 919075 441 233 aa, chain - ## HITS:1 COG:CAC1317 KEGG:ns NR:ns ## COG: CAC1317 COG1226 # Protein_GI_number: 15894597 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Clostridium acetobutylicum # 5 233 17 255 256 135 37.0 9e-32 MAIMILAIISIALTILDFCNTISLTSDPWNVINDGILIIFTIDYFTRLAYAKNKSEFFIH NIFDLLAIIPLYSAFSFFRFSRVFRIFRLLKLLRFIRMIGIIGKLQKSFHTFLKTNGFIY LLWISLAILFICSSMYALAEHVSWGQALWWAIATATTVGYGDISPHTLMGKIAAVLLMFV GIGFIGMLTSTITSFFAGQDKSQYRDLKVRLTKIEQQNEELKNSLDDLKKKIK >gi|238617817|gb|GG669604.1| GENE 858 919310 - 919489 195 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508715|ref|ZP_03938764.1| ## NR: gi|227508715|ref|ZP_03938764.1| hypothetical protein HMPREF0496_0878 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0878 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 59 1 59 59 106 100.0 5e-22 MYFVIDQTPNGTFQFFIKSADHETIAMSKAFDTKLAAQKAVSIIMNGHLSPKSHIEDLV >gi|238617817|gb|GG669604.1| GENE 859 919910 - 920047 101 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVLSKQLEMTVFGQLVTGLKPRQRLKKLQKKLQREKGQATAVAAS >gi|238617817|gb|GG669604.1| GENE 860 919965 - 920261 60 98 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLFSAICLGRNTFFIITIYKNKRPTTSQVIGCSPSQPLISYRTYQLPFSRRASNTSNHYM SSLLANLGEFVIKKQLLQLPDPSRVAISSATSLIFVAV >gi|238617817|gb|GG669604.1| GENE 861 920303 - 920659 353 118 aa, chain + ## HITS:1 COG:no KEGG:LC705_00164 NR:ns ## KEGG: LC705_00164 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 2 117 1 116 116 82 40.0 7e-15 MLWLWIHLVTWFVLTIVVVLGLIAKSHKVTVWAMTARVLYLIAIISGVILLLGTWQYNPI LSTIKVILALGLIAFIEIAFARKQENKFHAGLIWWALCFCIVVGIVGLILSQGRPFLH >gi|238617817|gb|GG669604.1| GENE 862 920807 - 921661 808 284 aa, chain - ## HITS:1 COG:NMA0440 KEGG:ns NR:ns ## COG: NMA0440 COG0791 # Protein_GI_number: 15793445 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Neisseria meningitidis Z2491 # 159 279 142 265 280 91 37.0 2e-18 MSIKKQVALGLFSMASVFTLSQVAANADTKVTVKSGDTLYKIATKYHTTVSTIAKANHLK DANTIVTGTQITIPGKSTAASSSTSSNSGAKKYTTGKTYTGKNKQTTSTYVSPSSNKQTS TTKSLSKTASSSTTIKSTKTAKSSTALKANATTDTTATPDTNSGTVDGVTTLAQKLTTQN IPYQWGGTTTKGFDCSGFVQYVYKQNGVSLPRTAEAQAESTTNESVSNAQPGDLLFWGSK GGVYHSAIYLGNNQYANAPEPGKTVQVQTISQYFAPSFAGSVNA >gi|238617817|gb|GG669604.1| GENE 863 922893 - 923609 462 238 aa, chain + ## HITS:1 COG:SP1089 KEGG:ns NR:ns ## COG: SP1089 COG2071 # Protein_GI_number: 15900957 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Streptococcus pneumoniae TIGR4 # 2 232 3 227 229 159 38.0 5e-39 MKPLIGIPANTGLTELGFRDYVDAAVAQAIIRAGGLPVILPPNNDRRLAKHVVSRCDGFM FIGGPDIDPTLFGEEPIDQIHGTSLKKDQFELAVCREAYKSNKAIFGFCRGMQIIAVALG GSLYQDISSQNKQAYIKHHQDAPIIYPSHHVEIDKGSQVAGIVGANPYVNSHHHQAIKES GPELNVVGRAPDTVIEAIESKTDDQVIGVQWHPEFLFETMPEERKLFENFIHRCKDRM >gi|238617817|gb|GG669604.1| GENE 864 923753 - 924439 709 228 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0635 NR:ns ## KEGG: Lbuc_0635 # Name: not_defined # Def: filamentation induced by cAMP protein Fic # Organism: L.buchneri # Pathway: not_defined # 5 214 3 212 218 176 41.0 5e-43 MNFADKTKLTQLENQKLAIKEMIRLVYSASRFEDNKATIRETETIILGSDVYGLSTRDTK IIRQLQSAVELMIRNSKPYSLAVSHAINGLVAKGESVAWGMLRTGKVKIGGTDYIPMIPV YDQVMADLTEIMMADQSATWKALKVMLYIMHSQLYWDGNKRTALLSANYILIQNGAGLLI IDDEHMTAFYRLLNGYYNTGHGETLMNWLYETCIVTDKALDAKKESFN >gi|238617817|gb|GG669604.1| GENE 865 924501 - 925346 721 281 aa, chain - ## HITS:1 COG:lin1140 KEGG:ns NR:ns ## COG: lin1140 COG4302 # Protein_GI_number: 16800209 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine ammonia-lyase, small subunit # Organism: Listeria innocua # 21 276 38 293 293 287 55.0 2e-77 MKVLKTQNQLLTPPQVQPLPVNADNELIDIRSIHLNTQLMVDHPANRDAYLSLKEATPAR LGMGRAGLRYKTRSVLRLRADHAAAQDSVWADVPSEFIQSMNMLPLQSQCQDETEYLTRP DHGRQLSTAAAAKVTQLIDKGPSVLLAVGDGLSSEAITANVGDVIPAIKQGLKLHDISIN TIPFIRFSRVAVEDQLGELTHAKVVCLLIGERPGLVTPKSMSAYIAYQPTVGMAEARRTV ISNIHPGGIPAVEAGAYIAETIWNMLTLKKSGLDLKEALKN >gi|238617817|gb|GG669604.1| GENE 866 925347 - 926723 1067 458 aa, chain - ## HITS:1 COG:lin1139 KEGG:ns NR:ns ## COG: lin1139 COG4303 # Protein_GI_number: 16800208 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine ammonia-lyase, large subunit # Organism: Listeria innocua # 1 454 1 454 454 643 67.0 0 MILKTILSGKHYQFKSVKDVMAKANEEKSGDTLAGIAAHNMQERVAAKVVLSQLTLNDVY EHPAVDYDHDEVTRMIIDDLDPLVFRQIKGWTFEQLREWLLATTTTNDMIHYLSQGLTSE MIAGVCKLMTNLDLITAAKKMINEKTANTTIGRPGTFSSRLQPNHPTDNLRGIMASTMEG LSMGIGDAVIGLNPVNDTVSGVTAILNTFNEFVTRWQVPTQTCVLAHVTTQMQAIEKGAP AGLIFQSIAGSQKANTAFGIDQHLIAQANQLGKQALHNKGQNVMYFETGQGSELSSDANF GADQVTMEARCYGFARHFDPFIVNTVVGFIGPEYLYDAKQVTRAGLEDHFMGKLSGLAMG CDVCYTNHMKADQNDIENLALLLANAGCTYIMGVPQADDVMLNYQSTGFQETATIRELLN LHPIPEFEAWMEKIGISQNGRLTSKAGDASIFMEKEPM >gi|238617817|gb|GG669604.1| GENE 867 926738 - 928147 988 469 aa, chain - ## HITS:1 COG:lin1138 KEGG:ns NR:ns ## COG: lin1138 COG4819 # Protein_GI_number: 16800207 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition # Organism: Listeria innocua # 1 469 1 473 473 402 44.0 1e-112 MPETIQTVGIDIGTTTTSLVLAQLSIQNTEAFSSLPHVQIVDKQINYRSPVIFTPLIDAK RINQEALQAFVAHQYQIAKINKADLKMGAIIMTGETARKQNARRTLQSLSQFAGNFVCAT AGPRLESFIAGKGANQTLLKRHPEIPVINLDIGGGTTNMAYFKNGDCMDTACFDIGGRLI RVNDHRQITYIAPKLQKIISSLALPIHLGDTVTPAILQPLIDEMVRALVKMVGGTQPAPF YNLLQTDPLNHPVNQDALITFSGGVSDCFFSKLPTNPFKYGDIGILLGHAIKTSAFFKAK HIGHPTETIGATVIGAGSQTVTVSGSTIRYSSNALPLRNVPVISLDQSKVTDINPVIEDK LMLYDLPELAAIGIALQHVGANFQAITKQAADLASGLTNLIRMKVPLVILMEKNVALFFG NCFREHIPKDYPLVCLDAVSTKDGDYIDIGRPVANGQALPLIIKTLAFN >gi|238617817|gb|GG669604.1| GENE 868 928314 - 929942 1556 542 aa, chain + ## HITS:1 COG:SMc01597 KEGG:ns NR:ns ## COG: SMc01597 COG0531 # Protein_GI_number: 15965967 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Sinorhizobium meliloti # 39 513 14 495 515 231 35.0 3e-60 MIIFGLIVIFVTIITMLAILVKATDSVRKWKLQSGSLFQISKSFGYKQELIRDMGGFSNF AVSFSIISILTGAVSYYGYGFSNGGPAMMGIGWPIVTFFVLFVAAAMAELTSAIPTSGAI YHWASILGGSTWGWFTGWLNVIGQVTIVAGIDYGCAIFASNLLFTHPSKPMFLLTYAVIL GSHAILNHVGINIVSKLNSISAIYHVVGVFLIIGVLAVLGPQHSGTYLFHTFSTATSQSM PYWGAFLIGLLQAQWTLTGYDASAHTSEETMNPRIQAPWGVYLSVAISGIFGFLLLSLVT VSIKNPTAVADAGNNAFIVAIEQAAGSRLGSAMVWLVTIAMWFCGCSAVTSSSRMVYAFS RDGGLPFSNQLKKISSKFHTPTIAIWLIVTLSFLFGTSDGVYAAIGTMSVIGLYGSYLVP IALKLRARVLHIWTKKDDGPWSLGSWSIAVSSIACGWIVFLILLMIFSPTDVQLTSNMVL HYATGKIFVAVLIVLIIDFVVYARHHFTGPKLGSYEALNKQLTTSQRDQSLTPEVDSETR KK >gi|238617817|gb|GG669604.1| GENE 869 930010 - 930291 311 93 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508725|ref|ZP_03938774.1| ## NR: gi|227508725|ref|ZP_03938774.1| hypothetical protein HMPREF0496_0888 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0888 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 93 1 93 93 164 100.0 3e-39 MTPEDLFSQFQGLLDAGHLEQARTFLQENAEGLGDHLTNATDMLADFDVSSVTDHVQNFG EETTSKVAESLEGLKDQVDASGWLDKIIGIFKN >gi|238617817|gb|GG669604.1| GENE 870 930549 - 930887 271 112 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508726|ref|ZP_03938775.1| ## NR: gi|227508726|ref|ZP_03938775.1| hypothetical protein HMPREF0496_0889 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0889 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 112 1 112 112 210 100.0 3e-53 MFRKFLFIVTVGLLLFAGLVTVPSSHASTLPGYYSSYWYKPRLIHIKYPVYVYQVNPENS RTNQKMVLLEDSKVQAENDTTFGWVVKAPYLQQKRGYIWIVKGHYNQDWIKW >gi|238617817|gb|GG669604.1| GENE 871 931074 - 932519 1378 481 aa, chain + ## HITS:1 COG:L184516 KEGG:ns NR:ns ## COG: L184516 COG0477 # Protein_GI_number: 15672362 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 15 469 11 467 467 243 35.0 4e-64 MADSRGKNLSIIGVLGMFSFLTSLSGSSTNLAIPKIAISMNISSSAATWIVQIGLITTAI LLVMFGHIGDILSKNAVFLAGGIAFLIGSTITGFAPDFITILIGRVIQAIGAAMIMANSM GIVTQYFPDNKRAEALAMISMFISVGSISGPGIGGFIISVSSWRWIYWINIPLGILVLWL GFKFLPIPKESWAHIKEVTKGANWTGQNLFTIGIILFFLSGSFFQSGRDHLLMGLAFFIV GGAITVYSFIQDDKSNLPWIAPEVLRNKGFMTSIFALSLVMLVNAISNILLPFYLQSYNG MSPFASGLVIMLQSVMMLITTPFAGVLADKINRELMTVIGLAILMFSQVGYAFFPDHLDM MKIIPPIVLNGMGIAIFLSPNNALTMGMVDKKLSGIAGSFNSFARTLGMTIGISFASSAL FFQLPGVTRITPAVGDKFVQAFYNVFWIATAISGLALAVVLIRYLKSRKEPVKKDSAKES A >gi|238617817|gb|GG669604.1| GENE 872 933043 - 933516 461 157 aa, chain + ## HITS:1 COG:L192240 KEGG:ns NR:ns ## COG: L192240 COG1918 # Protein_GI_number: 15672170 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein A # Organism: Lactococcus lactis # 13 149 13 143 152 93 40.0 1e-19 MEALSEAKHRGEYIIMNVLGDKAIVRRLSEMGMISGKKVTVISLSTDSSGMMIYFQGQRL AISLDIAERIVVRDIKEKAGDKLHSLSDLKIGKSGIVRKMVGDRALRRRLLDMGLTNNTM IKVNQIAPLGDPIELMVRGYKLSLRKRDASCVLIEEM >gi|238617817|gb|GG669604.1| GENE 873 933520 - 935637 1744 705 aa, chain + ## HITS:1 COG:L190009 KEGG:ns NR:ns ## COG: L190009 COG0370 # Protein_GI_number: 15672169 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Lactococcus lactis # 3 693 1 700 709 759 53.0 0 MEMSSLALVGNPNSGKTTLFNALTGSNQHIGNWPGVTVERKSGQLKSDKSMIVQDLPGIY SLSPYSSEELITRKYLLDDLPSEILDVVDSTNLERNLYLTLQLMETGIPLLLILNMMDIL KKQHHRRINLKKLAYILDVPVVSISALKKQNLDQLTEKIREKDAEDHQYAYPEYDPRLES ALSMIQDQLTGQLPDNELRWYAIKVFERDEAVSRAMSFTDKQQREIEATIKATEKIFDDN SDSIVVNARYDFIAKIIEMCVVDTDDFKMSMSDRVDRIVTNRWLALPIFVLVMWAVYYLS IQTIGTIGSDWVNDTLFGAWIPNVTTSLLNAMGVAAWLKGLIVDGIIGGIGSVLGFLPQV MMLFLCLGILEDCGYMARIAFVMDRIFHRFNLSGKSFIPMLIATGCGVPGIMATRTIESE KDRRMTIMLTTFMPCSAKLTVIALISGTFFPHNSWVAPSAYFLGMLTVVCSGIFLKKTKL FRGAPAPFVMELPAYHFPKLTNTLQSVWFRAHAFIMKAGTIIFLSCVVIWFLQSFNFRLQ MVDQNHSILQALGSFLAPVFAPLGFGDWHATVAVIAGLIAKENCVGTLHITFGGSNAGFV DALRSTYSPMAGYAFLAFNLLCAPCFAAIGTMYKEFGDAGWTWRAVGYQTLVAYMVATII YQSSQVFSANFSPVGLTVAILALGVVVYGLFIKRERPDLGINVSA >gi|238617817|gb|GG669604.1| GENE 874 935689 - 935856 69 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508730|ref|ZP_03938779.1| ## NR: gi|227508730|ref|ZP_03938779.1| hypothetical protein HMPREF0496_0893 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0893 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 55 1 55 55 100 100.0 3e-20 MGTLIVAIILFGLVGFAFYVRFLKKGSKGSCHECADVGCPLADRAKMVKNKRMKA >gi|238617817|gb|GG669604.1| GENE 875 935936 - 936088 72 50 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508731|ref|ZP_03938780.1| ## NR: gi|227508731|ref|ZP_03938780.1| hypothetical protein HMPREF0496_0894 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0894 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 50 1 50 50 84 100.0 2e-15 MELIMIFSLWLFSIFVGVAIEGIAYWRGKLTLSDDDYKAFSARITSAKIR >gi|238617817|gb|GG669604.1| GENE 876 936462 - 937394 1010 310 aa, chain + ## HITS:1 COG:no KEGG:LVIS_1974 NR:ns ## KEGG: LVIS_1974 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 63 300 163 407 413 138 39.0 4e-31 MNKALKKVTLLSAAVLGLSGAAFAAQPATTASAKTETTAVAKAHAKKATSKKAKAAAKKK AAAKKKAAAKKKAAAKKAAENKASLAAAASAAAAAKAAEAKKVGTPATASSSSTAAPISS TSSSAPYVSVGTTQTTIDSTFNIEGYSQATGGKQVAHAQWTIPLWNGNVNWNNAVNTFNR DRTVMGDKKDVIPSNTLKAALKNDGFNQVYMKITPTILPRLAGGWLDNVDSLTGVYMKFN LDTDSIPSNVHYGDTVRLGYTVDDSALYTKSAGDTKNENSSANADGYIGMTIYRQWVKTI LDMYVVNPYL >gi|238617817|gb|GG669604.1| GENE 877 937841 - 939901 1571 686 aa, chain - ## HITS:1 COG:CAC0625 KEGG:ns NR:ns ## COG: CAC0625 COG4934 # Protein_GI_number: 15893913 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted protease # Organism: Clostridium acetobutylicum # 78 679 57 623 625 287 33.0 6e-77 MGLGNREVDFPTSFYRLNQNHKTHLAYSINETVIIKLDYFRKRVIILRGKQLIIATLSGF LVLGTGFTANAKAKKADNRSTVVNVAFKASNENDLTNYVYDTVDPNSANYHKYLSPSEFA QKFGQSDSYLSSFRSYLNRYHLSTYAYPGNLSLKIRGTKANVNKAFKAKYVKEKGHESKT TYKLPGKLSKQVVAVIGVYAPKPKTKKAAKKTPAKKKSAKKAAYIPSILKSADVPVSDNK PNTNVTGNAFSKKYGALKFADRYQLNNLYDKGLQGQGQRIGIISHADFRIGDIKTYWEQT GVNTDTSRIHRIYTVGGEKAVQKISGRLMTPGQLEASLDVQSASSVAPKANIDVYIAEPS NDATTTPSAHYTAFMSAISDNDDKQISTSFGPSVETNSEWPDHSSTLKQYNHAYNLMLEQ AAAQGISVFRASGDYGRSESPTGKENHVVSTSPYQVIVGGTTLPYTKILHNKLIKVAKER AWGDTYSVSPAEIKAGVFPGSGGGFSALNPTPRYQLGVPGVNTFRAIEALKYVGNGRYTI NKNPKVITGTGHSRNLPDVAGNADTQTGYATYFSGNQASIKGKSLSIKPAKIWMVGGGTS YTSPQMAAANAVMNGDRSTPIGFWNPQIYKFAQQPDTPFNVLDDANNNNNLYYTGQPGTL YNQATGLGTINFEKLYQKFNNESPSN >gi|238617817|gb|GG669604.1| GENE 878 939936 - 941852 1471 638 aa, chain - ## HITS:1 COG:CAC0625 KEGG:ns NR:ns ## COG: CAC0625 COG4934 # Protein_GI_number: 15893913 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted protease # Organism: Clostridium acetobutylicum # 32 631 57 623 625 289 32.0 1e-77 MRGKHLIIATLSGFLVLGASLTANAKTKKTDNRPTVANVALKPSHETDLTNYVYDTVDPN SANFHKYLTPSEFAQKFGQSTSYITAFKKYLTKYHVKASAYSGNLSIKVTGTKSNVNKAF KAKYVNRDKTSYRLPGRLSKQVVAVIGVYTPNPKAAKKKAAKKTTKKQSSKEKSAYTKSL SSNVDVPTSGTKPDTALSGNAFSKKYGPAKFANRYQLNSLYNQGLEGQGQRIGLVVHTDF RNSSVKKYWQQVGVNTDTGRLHRIAVAGKQKNVTALSNSQFNMAQVETTLDVESASSVAP KADIDVYIDLAPSGATLNSSAHYTAFMQAISNNADNQISTSFSPGDEAKNGWDDKSANLV QYNHAFNLMLEQAAAQGITVFRAGGDHGPYDEAQAAQTNAVSTSPYQVLVGGTTLPYTRI IHNKLIKVNQERAWGDTYSASPAQLQKGFFPGGGAGGFSTLNPTPRYQAGVPGVNTFRAI QLLKYVGKGLFTVNKNPKVITGVSHGRNFPDVSGNADPQTGYATYINGTQPTKKGKKVVR VPYQIWVIGGGTSYTTPQMAGASAVMNSGRSTRIGFWNPQIYKFAQETDSPFNVLADTTS NNLYYTGQPGKLYNQASGLGTINFAKLNAKFNSEGTAN >gi|238617817|gb|GG669604.1| GENE 879 942029 - 943924 1434 631 aa, chain - ## HITS:1 COG:CAC0625 KEGG:ns NR:ns ## COG: CAC0625 COG4934 # Protein_GI_number: 15893913 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted protease # Organism: Clostridium acetobutylicum # 25 624 57 623 625 276 31.0 1e-73 MIAVLSGLSFLAMGHGLTANAKSDNAPTIANVVFKPTNETNLTNYVYDTVDPSSQYFHHY LSPDEFAQKFGQSNRYVAAFKTYLKKYHVNADVYGGNLSLKVSGTRNNVNRAFNATYVTE KGTHKSRTTYKLPAHLSNHVLTVMGLYQSKPTVNKPVNRQSHSKKALTQLRSSSVSSPTQ TDDTKPDTTLSGDRFSKKYGALKFAKQYQLTALYDKGLKGQGQRIGIISSGDFHNSDLTT YWKQAGVNNDLSHIHKIYTVDSRKDVQKRLDFAVNGAQIEATLDVQAASSVAPKADIDFY IGDSTDDLTNAPTAHYMSFMQAISDNIDQQLSTSFAPTAEVQSRWHDYSATMAQYNHAFN LMLEQAAAQGITVFRASGDNGPRDDVTLAKENHAFSTSPYQVIVGGTTLPYTKTINHKVV TVAKECAWGSNITATPAQIEAGKIGGSGGGFSALNPTPRYQQGISGVNTFRAIELLKIQR KSHKYTISKHPKIITGINNGRNLPDVAGNADIQTGYALYFSGNQVRFKQNKLHSVLKKVW MMDGGTSYTSPQMAANAVMNSGRTTSIGFWNPQIYKFAQQADSPFTVLDGTNNHNLYYTG QPGKLYNQATGLGTINFDKLSRKFDQETNDK >gi|238617817|gb|GG669604.1| GENE 880 944021 - 944824 682 267 aa, chain - ## HITS:1 COG:no KEGG:LSA1295 NR:ns ## KEGG: LSA1295 # Name: not_defined # Def: hypothetical protein # Organism: L.sakei # Pathway: not_defined # 11 263 9 267 268 245 55.0 1e-63 MLLEGIKKRGLTSFDIKILGITLMFIDHIHEMFSAAGVPTWVDMFGRPVATIFMFLSVEG FTHTHNKKRYLLRLLIGFWMMGIGNFVVGHFFSVGNLVLINNIFGDLFIGVLTMYGIQML ADGFKNHQLSKASFGFFLIMLPLVLGVLLLTFMQGKMADYTTYLMLAAPTPFSAENSFFL YLGPVLYLVRKHRSWQMIAIACFALLSTGFNFTNLLSNMQWMMVFSIIPLSFYNGQLGKS MKGFFYGFYPLHIWGLYILASLLGVGK >gi|238617817|gb|GG669604.1| GENE 881 945125 - 947014 1349 629 aa, chain - ## HITS:1 COG:CAC0625 KEGG:ns NR:ns ## COG: CAC0625 COG4934 # Protein_GI_number: 15893913 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted protease # Organism: Clostridium acetobutylicum # 34 622 59 623 625 286 32.0 1e-76 MKRRNQFIIAALSSLLFLSIGLTSKAKTVSNTHQVVVNIAFKPTSETNLTNYVYSTVDPN SINYHHYLTPKQFAQKFGEPNAYLSMFKEYLHKRHIKTAVYRGNLALKLRGTQNNMDRAF HANYHPRKGTPSRTTYRLPAKLSKQVVAVIGLYTGKPTSKRTAHSKTALTAALGHKPNTA LLPDAFSKKYGPLKFATHYQLTSLYDNGLEGQGQRIGIISDSIVHNQDLKIYWAQNGIHD NPNRIHRIYTIDNRKAMQKESKIGGTIPKTEAALDVESASSVAPKADIDIYSGYSNNNLT SLPSAYYTSFMQAISNDLDHQISTSYSPAIESLGGWDDHSATLANYNHALNLLLEQAATE GITVFQASGDSGPYAMGGLKEQHSFSTSPYQVIVGGTTLPYTQKIHHKTITVTKERALGD IDHPSEPVFGGFYEILKGIFHGSGGGFSALNPTPRYQQGIPGVNTFRAITLLNYRPQTHL YTINPHPKILTGTHTGRNLPDVSGNADKQTGYATYFSSDMSTGSDSKGKPILKKYWLIGG GTSYTSPQMAAANAIMNSGRTTSIGFWNPQIYKFAQQTDTPFNPLNDANNNNNLFYTGQP GTLYNQATGLGTINFDKLYQDFNNQDASQ >gi|238617817|gb|GG669604.1| GENE 882 947069 - 947485 470 138 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508738|ref|ZP_03938787.1| ## NR: gi|227508738|ref|ZP_03938787.1| hypothetical protein HMPREF0496_0901 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0901 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 138 4 141 141 276 100.0 3e-73 MGLLGPKLNIHEKRKLFILSFLAKDTGQPGQQRLKMLFESAKKAKYADTDILKELENLDA IHDVMLNIEVYQTFPRKYFTVSLQGDEWLTSRGKVYLDQLEHPKNKHGAVVDPEDGHRPL SGFVNGTVSEDGQVVFSD >gi|238617817|gb|GG669604.1| GENE 883 947821 - 949104 844 427 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1954 NR:ns ## KEGG: Lbuc_1954 # Name: not_defined # Def: alpha-galactosidase (EC:3.2.1.22) # Organism: L.buchneri # Pathway: not_defined # 1 423 2 421 425 638 70.0 0 MIEKFRQFAKVPPKGWNSWDGYGASVREDEVKRNADYMSQHLKQFGWQYITVDIQWYEPS ADSSKYHDFAPLVMDDYSRLLPDPKRFPSATNGSGFKPLADYVHHLGLKFGIHIMRGIPR QAVHKASPIKGTDKTARDIALNNICPWNSDMYGVNVDMPEGQGYYDSLMALYASWGVDFI KCDDIANSVIYNGTHKKEVEALRKAIDKTGRDMVLSLSPGPAPVENGAFFQHTANMWRIT DDFWDEWSLLLNMFDRAEKWSSMSRPGNWPDCDMLPLGHIGIRSVDGPGGNRQTRFTKAE QKTMMTLWSLMQSPLIMGGELPDLDDWTSRLLTNRELLKMDDRITEKYQIYRDKKMIIWY AASSDSEYHAIFNVSDDELTLTGSQISSFDLPLKGYNVWLDQDVTLSTKQTIQIGSHDVY LIKTSIN >gi|238617817|gb|GG669604.1| GENE 884 949126 - 950508 1417 460 aa, chain + ## HITS:1 COG:STM0042 KEGG:ns NR:ns ## COG: STM0042 COG2211 # Protein_GI_number: 16763432 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 13 455 10 452 457 391 45.0 1e-108 MDEKMTHKVTSYPAGSTKEKVGVLEKLSYANLDFSGQLVATIVNSYLMYFFTDVAAISAA STGVILLLARVVDAIGAPVWGTFIDMTHSKFGKARPYFLWLAIPYAASGILLFWAPDLSA SAKALYCGIVYMIYGVLYLGINAPITTILPLITSHPTQRVKLNSWRMVGSNLGVFVVNSL TLPLVAFFGGGNDIKGFRIFVVIFAILNLSGTLFSFGHVRERVVVPNSQRVTLRRSIHAM NKNWPWFIIVAGNFLFWVAQQGRQQSMVYYFTYYFHNKGLVTFFNSIAIIQVLGVISIPL LNKVMSKSHIWGMGLIIAVLGQFVIMFSGLSAVGATAGWLIANVGSGIAVSMPFAMLGSA VDYGEWKNGVNAAGILTTIGSAFCMSMGMGLAGAMNGGIMSAFGYIANHAQSAHALTGIG ISFNWVTILMYGLAIIPAFLYQRYENMESEITNELSKTRE >gi|238617817|gb|GG669604.1| GENE 885 950833 - 951771 722 312 aa, chain - ## HITS:1 COG:BS_yisR KEGG:ns NR:ns ## COG: BS_yisR COG2207 # Protein_GI_number: 16078146 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus subtilis # 38 287 36 285 287 89 27.0 1e-17 MLSVTCFDISAPVLHISSGKFTAAKNWMHKHMYHDGNFEIIIVIKGTLYMQVDNDHYQLN SGDVFALPPYHHLHGYKPSPEDTQYFWFHFFMKPNGLKTIDVEQDRGKITALFNSDTAVL PLIFNLSTVEKEFVLANQILDVSASNYFTSLSVDYLLTEMIIQLSEDYYQKIIGPSPSEH AARVETIKNWIRANLSESLRVGDVADAFALNPHYLVRIFKEQSNETVIQYINKLKMEEAK ELLVRTNMAIKQIAGMAFFSDEKRFMKAFKKYTNLTPSEFRRAYTQQFLDSSNFDPEVPI TKNTEDYRRRFE >gi|238617817|gb|GG669604.1| GENE 886 951977 - 954082 1399 701 aa, chain + ## HITS:1 COG:BH2223 KEGG:ns NR:ns ## COG: BH2223 COG3345 # Protein_GI_number: 15614786 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidase # Organism: Bacillus halodurans # 253 546 275 568 748 96 29.0 2e-19 MSSFNVETDSAKLGFEILDNHKIILTTVGTNDLSKVDAELKQHMTLTEVQITGRNFHHKG LSFVDTNPGRDLTYVRHTIEENRAGKLLKVVQEGENRQLEVTNFYQLYQNTPVVRSWVSL KNIGNEDLGIEYVSSFAISGVNQADDLGGNYSEDNVVYIPNNDWTAEAQWKADSLKDAGL DYWVDGEKKQASTKRISITNNSSWSCSEYSPNGILVNTRTNQAAVWQIENNGAWHYELTD IGRGNLLALRLSGPEELDNHWWKNLTVGQSFTTAQVAFGQVKGDVETALDAMTTYRRNIR RSNEDDQKLAVIFNDYMNGLSGDPTTAKEIPLIDAAKKVGCEYFVIDCGWYAPGYWWDSV GEWQPSEERFPGGIEKLIQYIRDQGMTPGLWLELEVIGIKSPLADKLPDDWFFMRHGKRV IDADRYHLDFTNPAVRQFADEVVDRLVKQYGVGYIKMDYNITTGIGTDLDSNSAGDGLLK HNRAYLNWLDDVFKRYPDLVIENCGSGGMRHDYAMLQRHSIQSMTDQTDYVRNGNIAAVG ASVVTPEQCAIWSYPLQKGDDEEVIFNMVNAMLLRIHQSGLLNKVTGHRLELVAEGIKIY KSYRDKIPTMLPIWPEGLSQLDDPWFSYGLKGNHELYLAVWRGVSDEEGHQLDLSQYGSV ESIEQIYPSEDHQTSYALNGNNLQLVFSKPKMARLYHVKLK >gi|238617817|gb|GG669604.1| GENE 887 954343 - 955173 760 276 aa, chain + ## HITS:1 COG:SPy1493 KEGG:ns NR:ns ## COG: SPy1493 COG1307 # Protein_GI_number: 15675397 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 2 274 4 275 279 147 35.0 3e-35 MIHIVTDSTAQLTDKEIEDNHIMVVPLAVTLEGQHYQDGVDVSRAEFSRRLREDRQFPKT SQPSLGQFVETYQRIAKPNDQILSIHIGSVLSGTVQTAQMAAEQVPAQVAVLDSGLTDRG LAFVVLKAAELIQTEHDLATIMAELKAYMNKITLTCFVNSLDYLVKGGRANRAIGFVSTL IKLKLELGMPNGELKVLHKSRGEKGMQKMIDQVTADIINHPQITRVGLSYVDSHADTDRI EAVLKKKRPDLEIVNRLTSPTIMTHVGPNGFAVIFV >gi|238617817|gb|GG669604.1| GENE 888 955387 - 957006 1352 539 aa, chain - ## HITS:1 COG:L143312 KEGG:ns NR:ns ## COG: L143312 COG4166 # Protein_GI_number: 15672325 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Lactococcus lactis # 1 539 1 550 550 330 37.0 6e-90 MKLKSLVKIGGVAILSALVLAGCGSKSSQSGSKAQTLNWMLPANISTMDASKMTDLYSSQ IENDTNEGLLRMGNSKVSPGVAKNYTISKDGKTWTFNLRHSKWNDGKPVTAKDFVYSWRR TVTPKTASQYAYIFANIENANKINAGKMSPTKLGVEAKGNYKLVVHLIKPQSFFKFMVAQ SYYFPEEQSVVEKYGSSYGTNSTKNGYNGPFVLKGWTGTNDTMKLVKNKSYWNAKNVKLQ TMNVQVIKDPSTALNSYQSGKLDFTTLNSTQVKQYKNDKDYKSYKEASTQYLEMNEKRLP MFKNKDIRKAFSLIINRNQLVNKVLADGSQLPKGYVPAGMNKKNGKDFADEAYVKDAVTN NDAEAKQLWAKGLKEVGKKSVSLTLMSDDDDTSKKITEFVQSQLTKLPGLKITNQNIPFK TRLSRSQNGQFDIVISRWIADYPDPSNFLDLFTSTNTYNNGKWKNAQYDALIKKSENQDA NNETARWNDMIKAEKILMNDQGIVPLTQQGQSALMKSKVKGVQFFPTAPQWDWSKASIK >gi|238617817|gb|GG669604.1| GENE 889 957335 - 958435 875 366 aa, chain - ## HITS:1 COG:lin2130 KEGG:ns NR:ns ## COG: lin2130 COG1104 # Protein_GI_number: 16801196 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Listeria innocua # 1 363 1 363 368 275 40.0 1e-73 MIYFDHVATTPMSTEALNTYREVAENFFANSESLHQAGNAAGQLVQESKAKIADLLHVPV EGLIFTSGGTQSNQLGIRCLATGSSKKEILVSPLEHSSVYQILNYLADTMDYRIKFLPVD QKGHITPAILQKAITDQTGLIVIQAVNAITGIVQDIQALKQLASAAHIPLFVDAVQGLAK IPLDLSGLAGFSASAHKFNGPKSCGLLYLSPQVMTKAPYKYVFQQNGFLPGTLAVPEIVS ATVALTNAWDAMADNLTHVGQLKKQLLSLLAPTIRPVASWSEYPGVCGLILPRTPGQSAA TSMGQQGFCFSTVSACSIKDPRPDRTLVSLGLTPEQTNRYIRVSFGPSNQPQEVASFADA LNRTYS >gi|238617817|gb|GG669604.1| GENE 890 958452 - 959543 709 363 aa, chain - ## HITS:1 COG:lin2133 KEGG:ns NR:ns ## COG: lin2133 COG0379 # Protein_GI_number: 16801199 # Func_class: H Coenzyme transport and metabolism # Function: Quinolinate synthase # Organism: Listeria innocua # 2 362 1 366 366 402 53.0 1e-112 MLNLKEKIAFNHYYDEAPEDQIARIKRIKADFGSDLMMVAHHYQKDEIVAFADARGDSLK LAQIAAQNHTAKKIVFCGVHFMAETADILTTDQQQVVLPDPMAGCSMADMANPFQLTKAW QTLTDRYGDSIIPVTYVNSSAAIKAFVGQKGGVAITSSNAKKIMTWALKQAKHLLFLPDQ HLGRNISLDLGIKPEEIGLWHAQQDFLEADQPDKLRVILWNGYCSVHQQFSVDNVKRLRQ KYPDVKIIVHPECAHEVTAAADFVGSTSALINYVDQAPTNARIAIGTDNNLVGRLKAKYA TKQVMFLNPYSCACILMNRIDLPHLAWTMDQLAAGKTGHVITVDPQTAYWAKKALDKMLQ LSL >gi|238617817|gb|GG669604.1| GENE 891 959620 - 961095 1397 491 aa, chain - ## HITS:1 COG:lin2131 KEGG:ns NR:ns ## COG: lin2131 COG0029 # Protein_GI_number: 16801197 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate oxidase # Organism: Listeria innocua # 3 487 5 484 484 456 49.0 1e-128 MRKVIIIGAGLAGCYLATQLQNTCDVTIVTKKSIQDSNSMLAQGGIAASLDPGDSPAQHA ADTLAAGQYHNKPAAVNQLVATGPKLIQHLIQDGMAFDRQSNGQLDFGLEGAHSHHRILH ANGDRTGAALTSFVQGEIHQVHWKPYSTAIDLQVQDNVCVGVIIRNDKNQALETLTSDAV VLATGGLGNLFPLTTNNQTITGDGIAIAARAGAAISDMAFVQFHPTLLSLHGKCYGLITE AIRGSGAILVDENNHRIMANVPKKDLAPRDVVARHLKAWQEQGHQLFLDISAILDFTTRF PGVTENLDNHHVPFRTTHRIPIQPGAHFVMGGITTDLSAQTSIPHLFAIGEVACNGVHGA NRLASNSLLDCLVSAKKAAEAIQKIDAVTIIPQDTPAAPQPKPLLPSLTDLQQNAWQNLG VVRTKAGLTAFQNWLSQFNYQELQPSQLNATDLAITNLCLCASLIDKAALAEPKSLGAHY IQETTVKTQAG >gi|238617817|gb|GG669604.1| GENE 892 961939 - 962070 112 43 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227511732|ref|ZP_03941781.1| ## NR: gi|227511732|ref|ZP_03941781.1| hypothetical protein HMPREF0497_0854 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0519_1643 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0497_0854 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0519_1643 [Lactobacillus hilgardii ATCC 8290] # 1 43 1 43 52 69 83.0 7e-11 MRLYDGKHLHIVAKMHKNTRKEKIEAAIVYGILALLLIWWFVK >gi|238617817|gb|GG669604.1| GENE 893 962027 - 962914 558 295 aa, chain + ## HITS:1 COG:SPy1861 KEGG:ns NR:ns ## COG: SPy1861 COG1396 # Protein_GI_number: 15675680 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 63 146 8 93 124 72 46.0 7e-13 MAFWRCYLFGGSSNRWVAIHLIIKLINTDCLIMTVFKRLEFRVLGGTWLYISSSIKGCDF RVFAENLRYLRKKYHLSQTTLARRLGRKSVASVSEWESGKYTPKLAIIEKVAALFEVDVT DLLYRELGKANEPKSRPESFLSMYSKLTPDRQRKVYQRILKLQETESEDSQTPIEQPVTI LKLEKTDLAITDEEESVNRPQKAGKPNFDFAVKIIGSSMLPNFHDQQIVFITAATKAENG QIVLAKVDGKYYIRRYEKTSEGAWLMPFNQDEAQVKIQDDTDFRLIGVVTGLLEE >gi|238617817|gb|GG669604.1| GENE 894 963013 - 963204 100 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508753|ref|ZP_03938802.1| ## NR: gi|227508753|ref|ZP_03938802.1| hypothetical protein HMPREF0496_0916 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0916 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 8 63 1 56 56 88 100.0 2e-16 MPITPRKMEKKLLKAGFRRIPDRGKGGHRRYRHPDGRTTEIPFHTGELKKGTELAILKEA GLR >gi|238617817|gb|GG669604.1| GENE 895 963235 - 963624 235 129 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01740 NR:ns ## KEGG: LCRIS_01740 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 124 1 124 131 120 48.0 2e-26 MKKRLIYPVIITEYQDDGHYFVVTSPNIKGMVTQGDSIADAAYWAEDAIATMIQDMPHYP KPQDPREWKLETGQQVVYISVDMTKWLRQNRKTIRKTITVPKYLSDLAKENDINVSKVAT EALKEKLGV >gi|238617817|gb|GG669604.1| GENE 896 963883 - 964281 444 132 aa, chain - ## HITS:1 COG:no KEGG:lhv_0953 NR:ns ## KEGG: lhv_0953 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 4 94 3 94 122 70 41.0 3e-11 MTYLYYALLTFNPEGQVEVTFPDLGFAAATFGNDVPDALHMAHDALEGYLLTSEDYNDKL PDTSDPRTIEHGKDQFLVPIEVNTTIAREREDEEKERLHLAKAVYKSKSPILTNPKDIEK YLSEDDNKNHPQ >gi|238617817|gb|GG669604.1| GENE 897 964747 - 965898 1196 383 aa, chain + ## HITS:1 COG:lin0289 KEGG:ns NR:ns ## COG: lin0289 COG0624 # Protein_GI_number: 16799366 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 1 381 1 378 378 318 44.0 1e-86 MNKQRQIEILSKLISIRSVNDHEAEVADYIASLFEPYKDKGVQIERVTYAPGRDSLVVTI GKGDRILGFSGHEDVVDPGDLEAWDSDPFKAVIKDGKLYGRGATDMKSGLAAVIIAMLDM LENDAVPGKIKLFATVGEETGEYGAAQLTKEGYVDGVDGMMIAEPGDSMGEVGFTSKGIV DYIVTSIGKGAHSSQPEKGINAIDHLIDFANEVKPVMAKFDKVDPVLGKLTHVQSLFNGG EQINSVPAKAVIKGNIRTIPEYPNKVIFDALEGLVNKLNKKSGYDLSIAYSFPEEAMPGD ANSPFIKLIKKVHDEMFDKPLVASGQSGASDGSEFLHAKGDFSIALLGPGNDTSHQSNEY VDVDVYHQSVDFYKQLAQEFFNQ >gi|238617817|gb|GG669604.1| GENE 898 965913 - 967430 1471 505 aa, chain + ## HITS:1 COG:SPy1543 KEGG:ns NR:ns ## COG: SPy1543 COG1288 # Protein_GI_number: 15675441 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 8 488 5 480 497 471 53.0 1e-132 MNESDQMKKHRFKMPSAFTILFGLTVFIAILTWFIPAGTYSTTPDGTLISGTYRTVASHT QGLWDVLMAPIIGMIGNKQTTGAIEISIFILVIGGFLGVVNQTGALDDGIRAIVHRYTGH EKRLIIILMILFSVGGSTYGMGEETMAFFPLLIPIMMGVGYDSLVAVGIILLSTRVGDLA STVNPFATGVASGIIKISPGVGLFSRVILLVIVTAMAIWFVIHYAEKVKKDPTKSLVYSQ RQEDMKRFSVADRTSAPKPLTKNQKHVLWVFCLTFVIMIVGLVPWTSINKSWNFFDRFNS WITGNAFLGTILGKDIVSLGNWYFNEITLLFLLMSIVIMFVSHMKEGQFINAFMNGMADL LNVAIIVAVARGIQAIMNSGMITGTILHLGETSLSGLPKPVFAILAFVFFCVLSVLIPSS SGLAAATMGIMGSLAVFSHVEGSVVVSAFQASSGLITAITPTSAILMGALALSHVSLTTW WKWTAKLIVSLFVVTCGFLAIVSVM >gi|238617817|gb|GG669604.1| GENE 899 968015 - 969904 1654 629 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0409 NR:ns ## KEGG: Lbuc_0409 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 385 628 373 619 622 161 44.0 8e-38 MDGTNSMYTGDKVSNSWYFPTAIFNLNAYKDNSDGTSNLTEQVQINNTTSSNKQINIQVI LPKPIFGGSYTNHPIIQYAKAQATTPISNSDGLTTTYYADNSTLTDTSSATDWANANNVI ISGTLKAGSNYELTLPLKLTNASTVDAYNIGNAFESDVINDSNVYGIYGRFAKGEALSDY AGVGKPYGVVLKVPGTKNADGVQTYSYPQATDVQLQMPDVTLNTDTSDVNNGFFNDGLAY LYTGSSYTIHFKNMKAKNGENLIDYLYEHGYAMPYPGNYDEDNNIKTEFTYTIGTSPSTV SPTYPAGTPVYNTGLGMQVVKIIDVKNLDYNDTINLPVGSKWNAYDNVSIWNPDTTYQAN TIDKSKINLQITSSDGKLTANHDLDTNQAGTYHVKYTFGHTYPNGNKRTISKTITVNVGS QSSGSTTTSSSSSSATTSSSSATNTSSSSSSTPTTSTNPSTSEQPTSSSKIAVKGEAVYA IKGIRLYKSVDFKANKRVTTFPKAKRVNRPEFIVKGYAYGQNGKLRYRVQQYNPYTQKYV KGRKGYITASSKYVQPAYYVSVPKSRKVTVINKNGVNTYKKASLATKAAHYKNKAVLKVK KIVKYKLATRYQLTNGHYVTANKKFVIQK >gi|238617817|gb|GG669604.1| GENE 900 970240 - 971988 1038 582 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0409 NR:ns ## KEGG: Lbuc_0409 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 299 579 321 618 622 189 42.0 4e-46 MRKINHRFNHLSKWLFAGAVTIIALLTVFIGGPSNASAAPFNLNNLRWGLLPAGDPTTPD GPATYSLMRTPALDARDWNPSPDYNPGNLENFGTTAGNIVSLQNPYVVGTSSPKVVAMDK DNYNQSDAQVGDTITQYDSSKFLVTGVSLGAYSDMMYAAAGPSYDGSHTSYRPECDYFDF KVEEVNTNGDVVPNSGLYVVNSQGYQYPTILGFDKMANKNDLAKVTITPLNNDKGKLFTG SQTLYLSLTGSRRSNSDDNYGYSTYQSSGTIDNIKSMLPNTAQSPINTDIPSNGELYLSD LNDGDLTEWTTDNPNLRSVQDSSQYGYKITGLNSLKPGTVVKFTGTDPLGNGKTNAFYFK FGTTSTPGTGGSSSGSTTTPNTSTATPTTDNSATTSSLSSSTPATSSSSTTTTVPSTSPS ESGNVEVKGGVIYATKKIALYKSVNFTKANRIVWYPKQKRINRPMFVVTGYARSANGTLR YQVRDVNHGHKTAGKTGYVTASRKYVIPVYYASLPKSKKITVISKKGIYAYKSVKLTGKS KHYKKGIRLTVKKLVKHNLTTRYQLSNGWYATTNKKLVIGSD >gi|238617817|gb|GG669604.1| GENE 901 972145 - 974010 1489 621 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0409 NR:ns ## KEGG: Lbuc_0409 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 399 621 393 622 622 195 51.0 6e-48 MKKTSHPQSLKRPSWFIISLLFVISTITLFIGHPLNSKAAAAETNTHLAVAADPDNFSIA YGSYDSPTELPNVIGLIIDLDTATEQNPIEFTPTDGGQFYIDDMVDGNAVWTVNNDKITM TDTSIANPNIDGYVASGLDKLVSGTVLLFTARHGDGTTNHFYFKIITNNTTPAISETNAG YGVYDSADVLTDFTSMQPNTSENPIAFTASKGVIFYVEDINDDKAVWSSDNANLTLTKNT DGLGYRVTGLDSVVSGTVVKFTARQSYDSTSDYYFKITNSNTPAAETNPSYALYDANGTI GQLTGIKPNTAQSPVALAVPDDGRLYLADPKNAAATWTTDNDKIKVAKDATRDGYQVTGL NSLTPGTVVKFTVHYPNGATGDFYFKFGTASTPGGGSAGGSNTTTKGTTGSSKPNGVIPP ATTTGASTSNPGTGSSATTTSGQNNGTTPATTSNAPVPTVKNVAAKGTVIYGLKKVGLYK GPTFKASSRLAWYPKQKRINRPMFVVTGYARSANGTLRYKVRDVNHGRKTAGKVGYITAN KKYVGSVYYATVPKNKKITVIAKTGINAYKSATLTGKAKHYKTGVHLTVKKLVKHNLTTR YQLSNDLYVTANKKLVIVGNN >gi|238617817|gb|GG669604.1| GENE 902 974052 - 975839 1400 595 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1928 NR:ns ## KEGG: Lbuc_1928 # Name: not_defined # Def: lipoprotein # Organism: L.buchneri # Pathway: not_defined # 422 591 469 638 641 197 61.0 2e-48 METTHRPHTNTLVRWLLLSLLAIATTITVSLGISSKAHAAPYDLNNMRWGLLPAGGLDKS GFPIFSNFDTAAISSTDWSPDPDGDQSFTSKDATLQKPYIVGTDTPKTVIGNYDKDGNPI GGDTKHQSDAKIGDTIQQQDGSTMTVTGFRIGANATEMGSVTGYGGWYDNLRAESEFFDF QVQEVDRNGQVVPNNKLTVFKKGNFQWSTILGVDKITDRKNNLVKVTITPLNSSLFANPQ TLYFSLTGIQAPVVEPKAKESNIGYALYDTGGKIGGFTSKDVATSTEKMPILLETPNDGN LYLEDLSNPGATWKADNPKLTLVKDPNPDQLGYRVSGLKSLAPGTIVKFTDTKIDGTTED VYFKFGNPTTPGGGTTSGNTANGGNSTGSATPPASIPTTTGDSSVVNQQGTTTTGTSQGS TPATSTSNAPIAVPKDVAVKSQVVYGLKKLGLYKNPTFTSSKRIAWYPKQKRINRPMFVV TGYARSANGTLRYKVRDVNHGAKTAGKIGYITTNKKYVVPVYYASLPKNNKITVIAKKGV NAYKAKSLTGKLKHYKTGTRLTIKKLVKHNLTTRYQLTNGSFVTANKKLIIAGNY >gi|238617817|gb|GG669604.1| GENE 903 976110 - 977027 667 305 aa, chain - ## HITS:1 COG:mlr3829 KEGG:ns NR:ns ## COG: mlr3829 COG0451 # Protein_GI_number: 13473282 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Mesorhizobium loti # 4 265 6 266 318 68 24.0 2e-11 MQTILGSNGQIGQELAKELAHHYTQDIRLVSRHPRKVNSNDQLLPADLLDFNDTNQAIAG SDIVYFTVGLPNDSAIWEAQFPIITENVLKACEANHSKLVFFDNTYMYAKTNQPQTEESP FLPTGRKSVVRAQIANMVLQEMAAGKLTAVICRAPEFYGPAKTKSITNNLIFNNIIEDKL VKIPVSDQTLRTLIWTPDASRAMALIGNTADAYDQTWHLPTADSLTYHDLILLSQRITGK SIKAIVIKPWVFKLAGFFNQNARELQELLPRYTVDNIFLSDKFKRRFPDFQVTSIQEGIK EIVQQ >gi|238617817|gb|GG669604.1| GENE 904 977282 - 977623 349 113 aa, chain + ## HITS:1 COG:no KEGG:LVIS_A06 NR:ns ## KEGG: LVIS_A06 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: L.brevis # Pathway: not_defined # 1 113 1 111 111 140 71.0 1e-32 MLHRENKILKYHTSSAADLIKETMMYYHITQTDLAERIGVSQKNVSEILQRKRFINEVIA LRIEKVMGLSSILLLNLDSKFKLHAAKDQRKEEKTKTGTKSDKFLKRYDWVNA >gi|238617817|gb|GG669604.1| GENE 905 978116 - 978694 391 192 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508767|ref|ZP_03938816.1| ## NR: gi|227508767|ref|ZP_03938816.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 192 1 192 192 355 100.0 1e-96 MTDLNGLMVEGAAESALIKILLDNDLLKFSSDDLISNSSGNLYQDFLGDRKFVNTFLSRD FGDIPIHMHIVCDNPNRDSKKIMKLSNAVTDITYYVTREEIESIQLRADPNWLPRFEKYK RKKGTDKKPSNFFIHELKISKIKKYDYVYKLWKDKPEALVDALQSVKREMQHKDLLKSKG SNYKYLADLLRD >gi|238617817|gb|GG669604.1| GENE 906 978687 - 979961 941 424 aa, chain - ## HITS:1 COG:no KEGG:LAF_0101 NR:ns ## KEGG: LAF_0101 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 4 400 10 397 402 197 32.0 9e-49 MIKLIGFKIFGHSLFENNTHFTLQTSGQITQKSKNRIIQFNNVLTLNRVIGIVGINATGK STLMEIFDGLNQLYLLDKSVDQTPLNDRLRSKDDQITINAYLATDTNDSYVVKTTFKNVP IPDGIDDGSNKEWIISDETVYHRKSKSVTKKDFFKIPESSNDKNTLTKVIDRKALSQDQK KLLSKKDSVFRAVGDLGRISTVSSTVSLTNRNKIISFMDNTPKELLDYLDNSIDDLIYEK DDAGKTVGYTLKFKGSDDIIHATSFDELSNYLSSGTIKGITLFHEFLVALRMGSTLMVDE IELHINRQIVKDFIGFFANPKININNATLVYSSHYIELTDDLTRGDEEYILTRKGQTKLT RLNDARIRTELKHSEIFQNNTLSGTAPNYSAYLKLISAVKNHNHKFNSLKGATTKNTGVA VKND >gi|238617817|gb|GG669604.1| GENE 907 980186 - 980593 442 135 aa, chain - ## HITS:1 COG:no KEGG:CLJU_c31460 NR:ns ## KEGG: CLJU_c31460 # Name: not_defined # Def: phage-like protein # Organism: C.ljungdahlii # Pathway: not_defined # 2 134 3 133 133 110 48.0 1e-23 MKYMYYALFTFNNEGKVEVTFPDHGNGAATFGDNVPDALYMAKDALEGYLLTMEDYGEDI PQATTDPRQIKHDQNQLVVPIEVNTTIAREREQNRNVKKTLVIPQYLNDLGNEQKINFSA TLTNALKEQLGVKDN >gi|238617817|gb|GG669604.1| GENE 908 980633 - 980815 157 60 aa, chain - ## HITS:1 COG:no KEGG:BC1003_3357 NR:ns ## KEGG: BC1003_3357 # Name: not_defined # Def: YcfA family protein # Organism: Burkholderia_CCGE1003 # Pathway: not_defined # 1 60 1 60 60 62 53.0 5e-09 MDSREVIKMLKKAGWKHVRTHGNHFQFRNDMKPGSGVVTVPHPRIPKGTLNSILKQAGLK >gi|238617817|gb|GG669604.1| GENE 909 981116 - 982051 702 311 aa, chain - ## HITS:1 COG:slr0619 KEGG:ns NR:ns ## COG: slr0619 COG2159 # Protein_GI_number: 16331820 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase of the TIM-barrel fold # Organism: Synechocystis # 46 309 66 336 348 75 21.0 2e-13 MMNKKIDLHTHYLPKGYVAALKTHIAGDPDGWPTPEWQVGTTLNFMKQNGINYSVLSLSS PHINFNDKAETIRLAEESNKLGNDLTLKYPKQLGYLATLPFPYETESVTAVNKAFDQYHA LGVTVPTNSRGTYFGSPTLNNVYQTLDDRHAIVAMHPNEPSALPKNVDTGLPTPLLGFFT DTTMTVMNLLKYRFFDRFPNIKLIIPHAGAFMAILTDRVAEYVESQYDTDIYKVMKHVYF DTAGSVLPRQLPALLTLADEDHVLYGSDIPYTPLDKSAKLQQKLSNTNALTDLQKQKIFH DNAAQLLEVNR >gi|238617817|gb|GG669604.1| GENE 910 982156 - 982761 318 201 aa, chain + ## HITS:1 COG:no KEGG:LPST_C2439 NR:ns ## KEGG: LPST_C2439 # Name: not_defined # Def: transcription regulator # Organism: L.plantarum_plantarum # Pathway: not_defined # 1 197 1 197 207 128 36.0 1e-28 MKLTGTPAQLKMFAALSKLLNQKPTVQVSITAIVKTAGVSRSAFYLYYSDLPAFFKDLQD RLLAHVEKAQDDHLKSAINATAISPDFENAYPVFFSLTKAVQDNFMLFKGLTEQKESRQF IEAFQFSLSETLFSNLTENMENKEFFDGIPSDYAMPMFFSSILIIILHWLHKKNPELAQV IARLITRSRYVAPYELFKKAD >gi|238617817|gb|GG669604.1| GENE 911 982816 - 983319 275 167 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508773|ref|ZP_03938822.1| ## NR: gi|227508773|ref|ZP_03938822.1| hypothetical protein HMPREF0496_0936 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0936 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 167 1 167 167 285 100.0 7e-76 MSKQWKVQLCYWATFIIGGMLAFHINTREWLRLFPNVTDQEPKPRSLLELMMVSDFIELI IISALLAWLATRFLTKGQFHRDQLIWINLVMIGLMTVTIICLIVYPASSPLLLTITWSLS LLGSPFVILKNDSKIVITKDRQYYFWGVLIGIFYIVMLVLVFYGSTM >gi|238617817|gb|GG669604.1| GENE 912 983455 - 983940 469 161 aa, chain - ## HITS:1 COG:PA1841 KEGG:ns NR:ns ## COG: PA1841 COG3760 # Protein_GI_number: 15597038 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pseudomonas aeruginosa # 6 160 7 163 165 99 40.0 2e-21 MKMATEQEAINLLTDLKINYQRVDHPAIWTMDDPNAPKGLPEVKNLLLKKKKSDQFYLYL TDNTKVDFKSLADQFGLAHSRLTFASEDELENLLGVVSGMVTPLALMHDTKHEVQVLLNS RLKKLPLISAHPNTNTATILLTWTDLLKVLDEMDHHPIMVD >gi|238617817|gb|GG669604.1| GENE 913 984434 - 984970 474 178 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0558 NR:ns ## KEGG: Lbuc_0558 # Name: not_defined # Def: RNA polymerase sigma factor, sigma-70 family # Organism: L.buchneri # Pathway: not_defined # 11 174 13 176 180 164 51.0 2e-39 MNYQEQRDRTEAFNFLLDGDHELIIYGVLKRLHVMKGNPLYDDMVQEGRLAFVNKYIQGI NAEKKPDPFLAYIYQGVYWAMIDYMNKQRVADGHIYETTGEDDPLAEISDANQSVEKMDG VALIETLSGLCTMNELKYLKCAYYLGMNVTEIALYLGINRKTVYRWRKSIIRKVGNRL >gi|238617817|gb|GG669604.1| GENE 914 985104 - 985352 352 82 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0559 NR:ns ## KEGG: Lbuc_0559 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 67 1 67 82 76 53.0 4e-13 MQRDWMKSTATYTFTEKDHKNGVKHNFSYVAKDVSAEMITKFGGIIDSLTEGDLLDATVA TTDHVSVDAPVKEEAPVEAPKA >gi|238617817|gb|GG669604.1| GENE 915 985436 - 985660 362 74 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0560 NR:ns ## KEGG: Lbuc_0560 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 73 1 73 75 90 63.0 2e-17 MRTLELIFKSSDDKTKTMTISYASGNLAGEDVQKKMQAISVLGMFDKDGVNPYQTPIAAQ YKSTEIDPLFDTRK >gi|238617817|gb|GG669604.1| GENE 916 986800 - 987918 697 372 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0564 NR:ns ## KEGG: Lbuc_0564 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 3 102 252 351 633 79 46.0 3e-13 MVDSNNNVVKSFDFTKTGVKKGDTLGTQTNGAWTLANADQNALQTQINTALNGTSFNLTS LTSAQQTALAQAKFGDSINLTVNANATISQSQVGINFVNVDNNQPVGTTVVRSNVNYLNQ SASNFITSNLLLNASGTSTILPDGYTDVVSNNGLTNSQAATNASAVANAQYGKSITYYVK AKQSAYNYFGNATNSLADLKYTTNADGTGLESITNGGQTTAYSFATQKSDTATNKKAALA TDKNTAGGIGDHVTASQVQNALNDNGLSTYYLILKPSDGTYVTSPSELANLKNNSGAGSY VTIQKFEFQPSWLGSTQLTIPDANSASATKSPVPYKLTTIKASLGTNAFNGQNSFTVDNV SKAFTDPGMSQN >gi|238617817|gb|GG669604.1| GENE 917 988560 - 990104 1409 514 aa, chain - ## HITS:1 COG:L78550 KEGG:ns NR:ns ## COG: L78550 COG0438 # Protein_GI_number: 15673437 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 505 1 495 506 219 30.0 8e-57 MYYFLNQYIKAFNSSVEHVEFHRLALFKHERLHAKIVTRDFDTMEYLNAANFGLKQDDIL NMYDYFQGTTDVKEKQTSTKGLNIPISYQLKYDSDVSKAYQGGRLAQTIHHTPSRVGEIS SVEHYDEFGNIANRELWDSRGFHSASQFLDYDGAPHAEILYHLDGTRALERFWEVTDDRK GKVIFNIHLINYKGNDYYFNSEEELFTFFLDEINTQDKDETTFIADRPGVADIPLVNMKT KAKKYLFFPILHAANPEDLINSPLEPSYEEVFKHLDKLDGLITMTDAQARQLRIRLKRQK GKGRNIKITSIPGVAFSNKQLKEPQVPMANRPGNKVLYVGRLGADKGVDNLIRAFALVTP QVPDATLDIRGFGDQEFVKSLEDLIQQLNLQNNVTISGYTPEIQPVYDSAKVFASAAHQD AFPLAMAEALAHGLPLVAFDTNFGPGEIIKDKVNGFLLEPGDLYGYSQTIISLLTKNTVL QRTSENSYLDSKNYSYPKVWKKWKNVLLSKSNTK >gi|238617817|gb|GG669604.1| GENE 918 990107 - 991663 1363 518 aa, chain - ## HITS:1 COG:L76469 KEGG:ns NR:ns ## COG: L76469 COG0438 # Protein_GI_number: 15673436 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 508 1 516 541 255 30.0 2e-67 MYFFYDDNISFKKSGIEHAEIKRLKLFNEKHVPAKIITRALSLNLHDVIDDAGIPEDQFV NLFDFFQGTTNFKRRKMTIKELTLPKGAKLKLERDKTKTDVFVGDQLVMIVGTKTVKNKQ IDWVQYSGFNGRPVRMVRYDSRGFASLEQFFAYDTTLVSEQILKPNGEVAIRRFTMPRRD GTTETSLHEVINYKGQDYDFATFEDLTTFWLDQLNLSTGEANTIICDRSYELDYSIQKME TPIYSVMYLHNNHVNSGTDHMHSSFNYNYEYMLENRRRWNGIATLTPWQYQDFTERFGKT KPNVYMIPGAVTDQKILDQPHVKWSDRKPKSVIMVARLSDEKQQDVLIEAWPKVLKAVPD ATLDFWGYSNGDYDKTLADLVNRLNLNDDITFHDYTKDISAVYNQAQLLILPSRAEGLPL TLVEAQAHGLPIVATDIKYGPRDVINDGKDGYLVENRNVDQLADRIIELLSDPKKLEAFS ENAYKDSWNYSSDAIWEKWQPLLKDAEKNAQIPESFEV >gi|238617817|gb|GG669604.1| GENE 919 991899 - 992735 632 278 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508782|ref|ZP_03938831.1| ## NR: gi|227508782|ref|ZP_03938831.1| hypothetical protein HMPREF0496_0945 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0945 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 278 100 377 377 384 99.0 1e-105 MTANATTTNVDVTRAVTLNYVDASTGALVKSTYWAPTGVVNGQAVDMTNGNAWQFVQVAP AGYAVNVPTATSALYKSLQTAKYGESFNIPVSRAATLTSTQIGQIFDKLQFGDDNNLLQA DTLANYAGTNGHTGAVGDPATHVVLNSQFYANAKAAFAAQLQTKVANGGSLSAADFKAAL KAGNLDSFYFANGGGAGNQGNIDTAQNGFKATLTTVNHNNGANTSDTTITLKINADGTQD AANTIYAHYTVQKAQYSGAVNSTPTHGDLGQTNWTTQF >gi|238617817|gb|GG669604.1| GENE 920 993910 - 994221 240 103 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0784 NR:ns ## KEGG: Lbuc_0784 # Name: not_defined # Def: peptidase M10A and M12B matrixin and adamalysin # Organism: L.buchneri # Pathway: not_defined # 12 94 28 110 343 67 37.0 2e-10 MVGITSHLNQPAALAQSKKAKVVYNMKNPTIRLKVSKGYIWSNRFLTQAKYHAKNYKNEM FYSSRHATIKKPNGKEANYWLISNKSGSVKGWIWDRNTKRLDS >gi|238617817|gb|GG669604.1| GENE 921 994664 - 995425 433 253 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508784|ref|ZP_03938833.1| ## NR: gi|227508784|ref|ZP_03938833.1| hypothetical protein HMPREF0496_0947 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0947 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 253 1 253 253 500 100.0 1e-140 MKLKAQLSATGKRIHQDTLDITKLRLNHLDSRRKKCRINWQDVYMITELNNKNYRTAIFF RTEKITGYELTTKTLLQKLTVEYTTNNDYTREELAHFIGEKEYIPCPFGKLGFIALKATH RSKNVTWISAEHIDHIQPTPNNDATCVFFKGIDSSVRIPTTSYFLEKRLCTIKNIHWLLN ILRTENDDRYRQIKQGFKTFVFINRLKKVADQFGIIITEEEKIAACKQELGFYYKPSLGY DTLLQVSREFDLD >gi|238617817|gb|GG669604.1| GENE 922 995592 - 996407 385 271 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508785|ref|ZP_03938834.1| ## NR: gi|227508785|ref|ZP_03938834.1| hypothetical protein HMPREF0496_0948 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0948 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 14 271 1 258 258 502 100.0 1e-140 MNFLTRQYLTSTGMKAHHASLNIANLKTSHIQHHQKSLSPYWPDVLMLVSLESSKFKTAI ITKRDGIILTNSSTNSLITNLVERHSYGSPYTKEHFANFSGICEYVPYAFGNLSLAPLKV TNGTRNASWIQTGLIEYHTFDHHQSNDTIIFFKDVNHPITVPYSHDFISRRMEDVDRVHQ VIAAMYQQFLNVYCPTYSNYDDTVSQANKRIVLPFKQFVAIQEYQNICKTTGTPVTESDE RKWCLEHIHYYDKSKKNLKLEFPLRYHVNAY >gi|238617817|gb|GG669604.1| GENE 923 996724 - 997551 846 275 aa, chain - ## HITS:1 COG:no KEGG:LVIS_2283 NR:ns ## KEGG: LVIS_2283 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 81 266 39 220 229 77 31.0 6e-13 MLKKIALSLAFGIVLFTSGAIAVNASTDLGNNENIQYVKVKKPTFTGQYTKVNGQKGQRI ITPKGTILKIMGISPATNSRRSQAVFSLGQISYVKQQRIYQPKNGVYIRNYNTTYFKPYS LKLPIRGQFLQLGKYANDGSEHYKPIFVVTMDGYLQYYSQSRLKHYQIQNNMSYGKQGSG GAAVNSPLFTIKPTQSVKITKFLVKGKYDTLYYRTPVRGLADKKVTKTYYRLKINQLGTI GKTWHSGEDFFSARWTNYNVGGHHFFYLGDVESGD >gi|238617817|gb|GG669604.1| GENE 924 997749 - 998504 540 251 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508787|ref|ZP_03938836.1| ## NR: gi|227508787|ref|ZP_03938836.1| hypothetical protein HMPREF0496_0950 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0950 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 251 1 251 251 471 100.0 1e-131 MKLIAQLSAAGRRAHKGTLDIAKLKLNHLDSRRKEYQINWRDVYMITELESKKYKTAIFL KTEKITGYELTTTTLLQRLTAEYATNNDYTREELAHFIGVLEYIPCPFGELGFIALKSSN KSKNVTWISAELIDHTQPADHGKATTVFFKGFDSPVMIPTTTYFLDQRLQAIKNIHRLLS IIRNEHDDRYRQIKQGFKTFVLSNKLKKFANKKGVTITHEEIVAACKEELGFYYEPSLGY QTLLDFENQFN >gi|238617817|gb|GG669604.1| GENE 925 999009 - 1003106 2993 1365 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2321 NR:ns ## KEGG: Lbuc_2321 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1138 1365 649 875 875 274 64.0 2e-71 MGNGALASPVSLSDFSSVPITQQIDTASKPTTPISPNAPTKQPQVSGQNSIQPDQNAASQ QKTSSDPVLTGSGLMFDPQGSGSGPFYPDDSINLILQIDSQGSGADYANGAAKIYFSKKY FQEISKSEISGGDFRKDPEITEDKDNYILTVYPITIPAGSHLGISLIVNLVPGQIKNKGS YSIPADFLDQNGKIILSNQSFKVSTVTDNPSINGTANGSASLSDTYWSDGKLKETYQLAM SSPSFYYDDRTEPGNYTVTVQLPKDVRVSDADIPDLNGWTYDKSKNTLTNKVTIDTTNLS GSKYSTFSNFSVTVPKGYQVDTPETSTTVLSGPNGVVDTRDGSILLSGPQPVPTYDFNVY SRIDATFTGDVDSPSVDYSQAGTTPLQTTLTPVNFQNLSDGKNASGNTGNNSAQLSSVTE TPNFGYQEKSLSFVDTDDLSSAIKSELNQNTVKATNDKGQSVDLGTVQYGKPLDLKGGVY KNLTISFKSPVTFDTDEADSFQAQITGALTKDELNNFVASGDPYTSYQNNISSNFSKTTE PDFGSDNPKTDNGNVSVTRNIPQLGGYGYTGLSLTGQNSDQMLGGKPLLANFSFYVQANE TMNIAPKNAKMVYLVPDGVTLDKDDTSDISHLKNLTVEPNYAGSGKTAIIGDISNAGDYN SDGSSINYQVPLTADESLTSGAYSVEAFLVLDNNNGKAGSQTDFVIGSNAAGVADSYGLY QNTNNPKGVVSQAGNFTYLPNRKLVNTNKVMADNQPPYVSDTGTNAYIGDPLSYQVTLNN DGERTYDYLDIIDVLPYDGDWKLNGVSRKSNIPLHLTGAVKVPDGYTASYSTDSPSKTLI DNYKAKFVSAGKVTDFSKVRMIRIKSNTGTKLGLKDKINITYPSVVPNVDKNSPLAKNAQ AVNTFVVRTSDKDNSLLESTAATVHAMQPYVNATIQFYDKKTDQPIATPKVIKDQKLGSK LTANAADYPIAGYVPDSSKDQTITIDRNLTKNVIKLYYDKQANVKVNGTAKFQTTDGQTI APDISFNGQSGYRYDLSKNSDVTKTQDNLKQKGYTFVKTVGSTSGIFEKGKDISVVYQYK NKETPTTPTTPSTPVTPSTPTTPGTPSGSASSSSSAASSSSAASSSTSEQPGLVAKKGEA VYALKKIGLYRTTNFSAKNRRAWYVSKPRVYRPMFVVTGYARSASGQLRYRVRDVNHLTK NRHLKGYITAGWTYVRPVYYQSKHQTLTVINPRGVNAYRKASLTKKVRNFKQGTRLHVKR FVHHNLTTRYILTNGHYITGNRKLVMMGNVSKKAFPKKVTIKRSINLYRNVNLTNRKKSL KKGQSLRVYRWDYSYANSVTKHGALRYRVAGGWITANSKFVKVIR >gi|238617817|gb|GG669604.1| GENE 926 1004120 - 1005280 1118 386 aa, chain + ## HITS:1 COG:no KEGG:LAR_1695 NR:ns ## KEGG: LAR_1695 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 67 382 80 404 411 91 27.0 5e-17 MAAKTYLDYCRDVAKILQYADKENMPLITDAIGIISKYAHLASSVENKDDSDSEKSVQKI VDAINKPQSDKEQQPAGDENQKTDKDTIDKVVDKPEETAADDKTYRFDRKLIGAVVNGIH YSETVIRKTDLKDGDIVKLKYSHSYQPEIELVARQASTGEDPIVRKTVIAEDDPNLGLVA KKAYDGTPLLHDDAPVTIRLNYKDSSRNKVQDGDIIDIAYYRDRGPAEARVAWVYRSSDT DEPLKTAPKPHSAYVDQSDKTPRIVEPKLDFDLKNKTVLMAGYSAHRSEVDDVIKAHHGK LIVFDGEASGKGIESDLLTAVKHADIVIVMLHSVSHETANKAITNAKNFDKLVATSNINS PLSIEAAILRALNREPIYQQSSHIVE >gi|238617817|gb|GG669604.1| GENE 927 1005542 - 1006591 779 349 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508790|ref|ZP_03938839.1| ## NR: gi|227508790|ref|ZP_03938839.1| hypothetical protein HMPREF0496_0953 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0953 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 336 12 347 360 636 100.0 0 MAKKKQVEAYVDQLMATYWDDFLSGGDFMTTVSMEDDFKNDMHEYLEAFLRVLMYAKIKP LSQINAKDIQLAIGMIEQTLPKDEMFEDLWTNYMAVSRIFLGWLIGEGILKLTDDQVDDA YDEALDEPSVSGTDDDIEAINRKLYHYDKPDLPTYQKDEAIEIRSKTVDVAEAFVKTNAL KTIYGLITPDIENNAVSDIADFATHMYGEYRLSPSKWSAEATQNILKGFFVKDALLNPDE FHYLGPTLKLFMDYAVTVDFIPETVGHSVKRAIDDVAPTLTRLGTNEANFSPEKRKILSL MKVTEDMPIDEAKDYMQAELENVEEKGDVMSVEEWHKKRKKRKNKKKKK >gi|238617817|gb|GG669604.1| GENE 928 1007126 - 1007380 319 84 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0266 NR:ns ## KEGG: Lbuc_0266 # Name: not_defined # Def: AbrB family transcriptional regulator # Organism: L.buchneri # Pathway: not_defined # 5 84 9 91 91 72 48.0 4e-12 MNTTSIKAKLTSKNQVTIPKTIREILNISSHDTIDFEVLPNKEVRIKNAKPTLWETLHEQ EKIYGNVSTDEIDWGKDVESEDFD >gi|238617817|gb|GG669604.1| GENE 929 1007731 - 1008075 319 114 aa, chain + ## HITS:1 COG:L197116 KEGG:ns NR:ns ## COG: L197116 COG3600 # Protein_GI_number: 15673914 # Func_class: S Function unknown # Function: Uncharacterized phage-associated protein # Organism: Lactococcus lactis # 14 113 10 109 306 99 48.0 1e-21 MIIVEKMDVKLIDEVYTIRGEKIAIRSSARFDSQTNKQVFDEKLDDQAVNEAFDAYRVKH DVISPDRIKALRHKYGLNQRDFATLLGWSPTTIATYETGALPSKSNDRILKSLE >gi|238617817|gb|GG669604.1| GENE 930 1008210 - 1008644 406 144 aa, chain - ## HITS:1 COG:yhjX KEGG:ns NR:ns ## COG: yhjX COG0477 # Protein_GI_number: 16131418 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 144 270 393 402 65 35.0 2e-11 MGWLSDITGRKTVFFITYIIQLLSLIALLMTKPGSMSMAMMYIVVIAMAFCFGGNITVFP TYVSDYFGLKNTSRNYSMIYQGFGIGAIIIGFLMASGNPLDPKKVTLSNGAVLTQNFTLT YWVLLVMVVISLAIFAFIKKPVKK >gi|238617817|gb|GG669604.1| GENE 931 1009295 - 1009525 250 76 aa, chain - ## HITS:1 COG:no KEGG:LAF_0917 NR:ns ## KEGG: LAF_0917 # Name: not_defined # Def: oxalate-formate antiporter # Organism: L.fermentum # Pathway: not_defined # 1 76 4 79 452 110 75.0 2e-23 MENSKGATNRWLIIFGTILIQVSAGSFYAWSIFNNGFMMKSGGVVQVVNGVKKIVGGLPA GSVSFTFTLGMLCLSL >gi|238617817|gb|GG669604.1| GENE 932 1009860 - 1010783 736 307 aa, chain + ## HITS:1 COG:lin0949 KEGG:ns NR:ns ## COG: lin0949 COG4814 # Protein_GI_number: 16800018 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Listeria innocua # 34 307 40 295 300 125 29.0 9e-29 MTKRNKILITTTMIIGAVVVLVVAGILFRSPSHSQRMSQRTTLAVNHSTTPVLFVHGWGA GLRSQMPLARKAIREGYAQKGLVVYVGPSGQIQMYGRLPAHPKKSPEILVKFPNAYVGEY KEAAALHKILILLKRHYHMTQYNAIGHSMGAYALTFQAEKYGNSNQLPRLNKLALIAGPF DGILNRHKWDQPLSGKLSRLWDDYPGQNRLLANGQPKIKHPEYRVLMRNRYRFPRQAKIL NIFGQVNDGSDSDGTISVPSALSLGSILKKQVASYKVRGFSGQLAKHANLETKNTRVQET IMKFLWG >gi|238617817|gb|GG669604.1| GENE 933 1011166 - 1011831 389 221 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508798|ref|ZP_03938847.1| ## NR: gi|227508798|ref|ZP_03938847.1| hypothetical protein HMPREF0496_0961 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0961 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 221 1 221 221 420 100.0 1e-116 MSKVITFYSDKHKVGKTTSVFFISYCLNKMGKKVTAIDLDRQEALTTAFNSVENYQSKIK NITPMKIEAEEPLINFLKNDDKSDVVLIDTGSDMILNKVALAISDEVIIPILGFEGLQTV SPKNISFTASRIAERVTPKALIRFLPIAATEYLPEEQKNINTYQHHHREININCYKEAIP DLFNFLADKQFASDVFHLAMTSEFGMNQFYERLTNEILQDS >gi|238617817|gb|GG669604.1| GENE 934 1012182 - 1014995 1929 937 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0846 NR:ns ## KEGG: Lbuc_0846 # Name: not_defined # Def: lipoprotein # Organism: L.buchneri # Pathway: not_defined # 148 937 116 871 871 593 47.0 1e-167 MLRKNRFWLYATLILSLSISTYTNSTNVNASVKHNYQTTTTPKVSADENVESGFWGDCPW KLNITTGVLQIGDPTKTTTGSNTRGITPFDRLDLCKSIDIVGKVNLPEDSSGLFSLYDPK WETPSSISKINHLDRLNTENTKIMSYMFGGDGDLQALDVSNFKTQKVNDMSLMFSNCRTL TNLNLSSFDTSHVTDMKYMFEECNDLSSLNLSNFITSNVQRMDSMFYACSNLVNLNVSSF DTKQVTTMNSMFEFDKSLKNLDLSSFDTPNVTDVDFLVSQCTDLEKLNLANFNTKNVEPE KSNILFVDKNVWSLTLGKNVTNDFLKNQEYQFGQPYNQPIPSTNPVKYATGPGWIAVDQS KGGTDTNPQGTLYSNYATFAEKRPAETETYVWQQETTPVDQYTLDANKSQDLYQGQTWDP TSAITSATKNGTDDKSNVTITDKKDGNAVTQDSVAKLNPGTYDLTYKNGDKTSTLTLTIK SDLASLKTTNIELYLNKSFKDADLRDNIDSKDSDGNPLNYQYSIKDASGTVPVDQVSSKK GQYTVEITTDKPKDGKAALKGTLIIKVTDRSALNLKYTTDTITVGQAWKPEDAFKNATDA KGDNLAFKDIKVTATDTTDSKHKPVKDLSSLNTKAGTYTIHYANGSAEQDLKLTVQAPST PSTPATPSTPTTSSSSSSSSSSTSSTSSSTPTSSSSSSSSSNTSLPSYVAAKGTVVYSIN KISLYKSTKFSANNRSAWYTKKPRVYRPMFVVTGYKRAANGALRYRVRDVNHTSKTNGKT GYITASQKYVRPVYYATKHSTVTVINPRGVNAYRKANLTKKARSYRQGTVLHVKRIVSHN LTTRYVLTNGDYITANRKLVNMGRHKQVKSVKTKRTLNRYSNANFTKKNQVIAKNRTLKV YGYDYSQKNNVTKHGTLRYRVAGGYITANTKYVRVYK >gi|238617817|gb|GG669604.1| GENE 935 1015121 - 1015561 406 146 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508800|ref|ZP_03938849.1| ## NR: gi|227508800|ref|ZP_03938849.1| hypothetical protein HMPREF0496_0963 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0963 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 146 1 146 146 265 100.0 8e-70 MKKLWILLGTSIVLIFGIGWQQTTVQASTVWHNETPKVLRGIWQKTIPSKYLKDKHEKIV RHQAYRITKRFVSYAATGLDDYGYKVSQTAKVGSTYYVRSYMQDGSTKYYRTFKLIPISV KKMSAPVIMGSGQGVFYKVRHTNAGI >gi|238617817|gb|GG669604.1| GENE 936 1015807 - 1016073 376 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508801|ref|ZP_03938850.1| ## NR: gi|227508801|ref|ZP_03938850.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 88 1 88 88 130 100.0 4e-29 MKISQLIAEKRRDSEFNQMYEVEDEKLQTAVALYKARENAGLTQAELAERAQTTQATIAK IERGDNVSFEKLSSIAHALGKKLVVSFD >gi|238617817|gb|GG669604.1| GENE 937 1016198 - 1016413 174 71 aa, chain - ## HITS:1 COG:no KEGG:SGGBAA2069_c00820 NR:ns ## KEGG: SGGBAA2069_c00820 # Name: not_defined # Def: hypothetical protein # Organism: S.gallolyticus_gallolyticus # Pathway: not_defined # 2 71 23 92 141 86 57.0 3e-16 MPSFETYKRPNGHDEFLEWINILPNKDSAKLLSIIDKLQSNGMLIAQRLKWVHKLDFNLY ELRSKVSSNIQ >gi|238617817|gb|GG669604.1| GENE 938 1016514 - 1016813 64 99 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508803|ref|ZP_03938852.1| ## NR: gi|227508803|ref|ZP_03938852.1| hypothetical protein HMPREF0496_0966 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0966 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 99 1 99 99 175 100.0 1e-42 MENATRIEVPFLGLGLDDLIIYAVPLPDNQIRLTDDGGTLNTETITPTKRTILVQQIQRY GLRLENDEIMVEAGSDRFPEKSQQMIEGLILINIFVLQQ >gi|238617817|gb|GG669604.1| GENE 939 1017161 - 1019200 1633 679 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1928 NR:ns ## KEGG: Lbuc_1928 # Name: not_defined # Def: lipoprotein # Organism: L.buchneri # Pathway: not_defined # 113 675 92 638 641 283 38.0 3e-74 MNKNHQNYLYIFVSALFIGAGSYLGSTNVLADADNPIAQVAKNNAQINNSANVEQGYWGE CPWNYDSVSKTLTLGEPGKTFSGGTVPKPETEGHRNVSPFNDIFVSGCQHVIIAGKVILK GNMSMLFGTISHNEIQDFQGLDNLNTTDVTNMSMMFREGNAKTIDVSKFDMANVTDVSGM FSNSAYLTELDVSRFNTAKVTNMSWMFMGCPKLRDLDVSSFNTAQVTDMTDMFLGCLTVE KLDVTNWNTAKVTEMTEMFGNCPQLRQLDFSNWDTREVKYARYFFSGAPNNLWCISLGKN VTPLVFGQLQNARYHEKGTPIPDSTPIRYANGSGWQAVHSNGMPSLGTPNNPQGSIFSFD DFIKNPLYGTDSGPETYVWQQESNPITKQNVTIEYLDANTGKSISGVKTKVSSDYPGEPY DVTGVDSRPDISGYTWDGKTPANAKGIYGDKDIVVQYVYHKNATPSTPGTPANPSNNNSQ TVTSSTGPSSSSASSSNGSSQTTPNTPNTAPKPSTSVGPNIAVKGEAVYATKKIGLYKNV NFKKSQRIAWYPKQKRINRPMFVVTGYKRTSNGTLRYKVRDVNHDRKTDGKTGYITANRK YVVPVYYASVPKSKKITVIVKKGINTYKSASLTGKVKHYKKGTRLTVKKLVKHNLTTRYQ LSNGNYATANKKLIITGNY >gi|238617817|gb|GG669604.1| GENE 940 1019408 - 1019842 322 144 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508805|ref|ZP_03938854.1| ## NR: gi|227508805|ref|ZP_03938854.1| hypothetical protein HMPREF0496_0968 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0968 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 144 12 155 155 268 100.0 1e-70 MKLKEFVTGVAIMSALGVGMFLSSSQVSASVWHKGMPNALKGTWRTHNRKIVKGTYEYYI LKIKGSRIDGTMFANTHGHIQEDAGPINVYNTHYRYLGNHVYRIRAKNALGNASTQINLK WLNKHTMQTYWKSGNKWVVEGYYR >gi|238617817|gb|GG669604.1| GENE 941 1019910 - 1020179 200 89 aa, chain + ## HITS:1 COG:SMc02477 KEGG:ns NR:ns ## COG: SMc02477 COG3093 # Protein_GI_number: 15966811 # Func_class: R General function prediction only # Function: Plasmid maintenance system antidote protein # Organism: Sinorhizobium meliloti # 11 85 4 78 88 67 45.0 6e-12 MNEIPTPKISEILAEEFMEPFNFSAYALAKHIEVPTSRIQGILHDRCKITVDTSVRLGRV FGVSDRYFLTLQNDIDLRNAEASDGSEHR >gi|238617817|gb|GG669604.1| GENE 942 1020267 - 1020686 357 139 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508807|ref|ZP_03938856.1| ## NR: gi|227508807|ref|ZP_03938856.1| hypothetical protein HMPREF0496_0970 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0970 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 139 1 139 139 255 100.0 8e-67 MKIDKFIITMELLSCVGFGTLLSSQQASAATWHNGMPDSIRGVWKTKVREHTLFYLWNIP SEGSFTKSRSFFNKRWYWGNETDGIFGKTKYKVINQNTYMLKAKNKENKAGYAKAVLNNS KKITMKYYGEGGFTSVFYK >gi|238617817|gb|GG669604.1| GENE 943 1020859 - 1021266 119 135 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508808|ref|ZP_03938857.1| ## NR: gi|227508808|ref|ZP_03938857.1| hypothetical protein HMPREF0496_0971 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0971 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 135 1 135 135 233 100.0 4e-60 MFSVKRIVGVFLATFLFFVTFTFVTYAAPQSLPKGTYESRLPKQAKGIWIEKLKDGSTFE FKVSNPKYVWVTTKNGGPAATTALTIVTKRRRASNNRFILYSPAADPIDLKWFHHHIYYW GYGPNRWIKMIRYSK >gi|238617817|gb|GG669604.1| GENE 944 1021366 - 1021794 273 142 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508809|ref|ZP_03938858.1| ## NR: gi|227508809|ref|ZP_03938858.1| hypothetical protein HMPREF0496_0972 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0972 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 142 1 142 142 257 100.0 2e-67 MRVWKKGLLVVLSTILFMTLSFNTKAAPTSTVPKAMRGNWYFYDYNSMNHYLFTKHRIRF DINDKGFRPRIRTIYRKMKLPGHSARTFRGYSFDIDYIYFPYKLKVAGRYRHVLISTMEQ GPMAIYTHFMPAKTYTINARMY >gi|238617817|gb|GG669604.1| GENE 945 1021818 - 1022255 351 145 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1919 NR:ns ## KEGG: Lbuc_1919 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 9 142 7 138 139 108 43.0 7e-23 MIKKQMYWIVGICVTFLIGINMTVIPSHAAGWHSGTPYALRGHWRTKTIHQKGNMKTTSK AEIGANKIEFNYFGGMPDIFAHIKWHKFNHQVYILKARRFLDSYQKVYQITIKRPAKDKM WVYLDGDAYPYPGSSTARLFHRTSR >gi|238617817|gb|GG669604.1| GENE 946 1022699 - 1023142 286 147 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508811|ref|ZP_03938860.1| ## NR: gi|227508811|ref|ZP_03938860.1| hypothetical protein HMPREF0496_0974 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0974 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 147 1 147 147 282 100.0 6e-75 MKKLGIQVLLGCASLSLLWSINFNHPVQAQARVVPANMRGVWYSYEGHGKYFKIKLTEQF LYSKDYFDNHYDYTHFKVEVSNYVHGTWVAINPVHKMAGPIAFYKYSPISIKGRWHKSLQ FREGSIYYRLFKTPIRHSFNKTVPIWY >gi|238617817|gb|GG669604.1| GENE 947 1023175 - 1023603 261 142 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508812|ref|ZP_03938861.1| ## NR: gi|227508812|ref|ZP_03938861.1| hypothetical protein HMPREF0496_0975 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0975 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 142 2 143 143 257 100.0 2e-67 MNKSALILTASLILGFGMGTTTTSSQAASWHKGTPAALKGVWRTHRDKIATKTYEYYILK IKGTKIHDISVESHQGSITEDVGPMYVHNVHYRYRGNHTYQIKAKNDIGNTAMQLRIRWI NRYKIRTYMNNGNHWVGGNYYR >gi|238617817|gb|GG669604.1| GENE 948 1023678 - 1024088 195 136 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508813|ref|ZP_03938862.1| ## NR: gi|227508813|ref|ZP_03938862.1| hypothetical protein HMPREF0496_0976 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0976 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 136 1 136 136 257 100.0 2e-67 MKGHISTIIESSLLMMIFLLGFSFCKTTASYAQSYYQSIPTSYRGTWHEIGERTLTGQWY RETKEKLIVHRRFVKTSVGTFGGLHLGVHRGKHYVTILPIRSGHRAGENYVMRRGKYYGH KAILVDFDICEQLYIK >gi|238617817|gb|GG669604.1| GENE 949 1024187 - 1024423 136 78 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508814|ref|ZP_03938863.1| ## NR: gi|227508814|ref|ZP_03938863.1| hypothetical protein HMPREF0496_0977 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0977 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 78 67 144 144 144 100.0 1e-33 MTFLGAQYSSSLRNCHYIHAGKTYIIEGASDHSGGDYTYPLIKVVKINKHLIYSNTGSAT KSGRYYITTPLDKMKLIK >gi|238617817|gb|GG669604.1| GENE 950 1024889 - 1025302 62 137 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508815|ref|ZP_03938864.1| ## NR: gi|227508815|ref|ZP_03938864.1| hypothetical protein HMPREF0496_0978 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0978 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 137 24 160 160 276 100.0 4e-73 MKLKRFADCVAALCFIGIGVISNAQSVSAAGWRKGVPRSLCGNYKCKTHQHAYPHWGVMS IHANYISEMFQGDPQSFLTQVRYKAVGHYTYKLNGFAKSNTGNGHGDHETWIIRRSGKRI NVRFNSYNAGQWYSRVH >gi|238617817|gb|GG669604.1| GENE 951 1025323 - 1025721 312 132 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508816|ref|ZP_03938865.1| ## NR: gi|227508816|ref|ZP_03938865.1| hypothetical protein HMPREF0496_0979 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0979 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 132 3 134 134 248 100.0 8e-65 MKKFAVGIAVVPFIGIGLLSNPQQSNAATWHRGTPRILRGNYARKQSAYPQFETLKFYSN KVVYQGQGNPQLIMQNVKYKKVRNAYILHGFVKVAIGIRPGRVTWKFYHYSHKLASKSFD GHATWYYKNVKA >gi|238617817|gb|GG669604.1| GENE 952 1025789 - 1025923 91 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKAKGFVAGVAAVFFIGMGESSNSQSSSTASWHKGTPGVVRNKN >gi|238617817|gb|GG669604.1| GENE 953 1025948 - 1026127 62 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508818|ref|ZP_03938867.1| ## NR: gi|227508818|ref|ZP_03938867.1| hypothetical protein HMPREF0496_0981 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_0981 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 59 1 59 59 115 100.0 1e-24 MAQVGYTFKNDSINAWTGANGQGLYVYPHTKYKSIGAVCTTLRLIQTMLPMVLVKHGLR >gi|238617817|gb|GG669604.1| GENE 954 1026792 - 1029170 1866 792 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0846 NR:ns ## KEGG: Lbuc_0846 # Name: not_defined # Def: lipoprotein # Organism: L.buchneri # Pathway: not_defined # 545 789 624 868 871 286 60.0 4e-75 MNKKQNYLYTFVSALTIGISGYLYATDVLADADSPITQVANTNSQTDNLAGGGKVALDTP SVQANPIQQTQQVAAETGSGQIEDVKYSIDNGILTLNGGTLTSAHVYPWMGNTDITKVQI TAPLFLEDSAPVGFLSEMTNLESITGMDNIDTSKATDMSSMFNGDFNLANLDVSNFDTSN VINMSWMFNDNQKLQTIDVTKFNTSKVNNMAGMFRATESLTDLNVSNFDTSKVTDMSYMF FQNMALKSLDVSNFNTSKVTNMSNMFGRNRLTTLNLANFDTSKVTDMDGMFTHSQVLTSL ALPNFDTSKVTTMANMFAWDDVLTSLDLSSFDTSNVTDISRMFYDNDKLSILKLGNKTLN KGLDGSELPEHSSASKIPNSSPVRYATGPGWLAVDANNGGTVDNPQGKTVYDGYLANRPA ETETYVWQQDSKPVAKQTVTVEYIDAATGKPIPGVEAKVITGFQGREYDVTGADSRPAIS GYTWDGKTPTNAKGTYGDNAVVVQYVYRKNSTSSTPNTPSTTTGPSSPTISSQASSGSSS SKASTNSSTASSTNNSATNVPGYAATKGTVVYSIKKVGLYKTTDFTKNNRRSWYAKKPRI NRPMFVVTGYARAANGKLRYQVRDVNHKSETKGQTGYITASRTFARPVYYATKHSMVTVI NPRGVNAYRKASLTGKVKNYRQGTVLRVKGIVKHNLTTRYVLTNGDYITANRKLVNMGRH KQVKSVKTKRAIHHYSNVNFTKKIHSIAKNRTLKVYGYDYSHKNDVTKHGTLRHRVAGGY ITANTKYVRAYQ >gi|238617817|gb|GG669604.1| GENE 955 1029397 - 1032846 2217 1149 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0846 NR:ns ## KEGG: Lbuc_0846 # Name: not_defined # Def: lipoprotein # Organism: L.buchneri # Pathway: not_defined # 392 1146 128 870 871 628 49.0 1e-178 MNKNQNYLYIFVSALTIGTGSYVCSTDVLADTDSPIAQVANTNSQIDNLTDVGKTAFDTP NVQTNAKNQVQQMASPNALTSQPATAASGQVEDVTYSIDNGVLTLSGGTLKSSTVHDYPW RADNTITDIRITGTLKLEGDTASSLFWGMSNLKSIAGMDKLDTSKATSMSWMFAGDSGLT SLDLSKFDTSKVTNMKSMFDGDFGLTNLDVSNFDTSKVTNMTEMFLNNSKLTSLDLSKFD TSKVTNMNRMFSDASSLTSLDLSNFDTSEVTNMYGMFSQNRSLTNLDVSNFDTSKVTNMS NMFAQDSRLTSLDVSNFDTSKVTNMSSMFQSNSKLTSLDVSNFNTANVTNMSYMFFVNSS LTSLDVSKFDTANVTNMSYMLSGNSSLTSLDVSNFNTAKVTNMQSMLSLNTGLTNLDVTN FNTSNVTNMDSMFSGDINLTSLDVSKFDTANVRTMESMFSMPFDSSKLTSIDVSKFDTAK VENMYRMFSNNADLTSLDLSNFDTAKVKSADFMFASDEKLWILKLGPKTFHSSFGYKALT EHSSNSKIPNSNPIRYASGPGWQAVAGGTVDSPRGPVYDGLLTNRPTEAEIYVWEQKPAA DQYTLKVNKTQDLYEGQSWDPASAITAATKNGESNKSSVTITDQDGKPVTQETVAALKSG SYPLTYKNGDQTGTLNLTITADTTSLKTTDIDLYLNKTFTDADLREKIEAKDSDGLSLNY QYNIKDVTGKPVAVNDVSAKVGQYTVEIATDKPKNGKDPLKGSLTIKVTDSSTLNLKYAT KTITTNQAWQPEDAFDNATDVGGQTLIFKDITVNATDSSGKPVNDLNNLYKNSGTYTVHY TNGAATKELKLTVQTPSNPTNPTNPAKPNRPSTPVTPTTPSGSSSVPSTTSGGGSNASSN TPAGSPSNSSNNANLPRYAAAKGTVVYSIKKIGLYKTTDFTKSTRRSWYAKKPRINRPMF VVTGYKRAANGVLRYQVRDVNHTSKTDGQKGYITASQKYVRPVYYASKHATITVINPRGV NAYRKANLTGKVKNYRQGTVLRVKGIVKHNLTTRYVLTNGDYITANRKLVNMGRHKQVKS IKTKQSINRYSNVNLTKKNQSIAKNRTLKVYGYDYSRRNNVTKHGTLRYRVAGGYITANT KYVQVIDRG >gi|238617817|gb|GG669604.1| GENE 956 1033202 - 1035082 1312 626 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0846 NR:ns ## KEGG: Lbuc_0846 # Name: not_defined # Def: lipoprotein # Organism: L.buchneri # Pathway: not_defined # 388 623 632 868 871 286 63.0 2e-75 METKKVLHEKTAQRGSNRSQSKKRVTTKLLMTALATLTFGGMTAITDVGLPSNVVQAAVG TYYIQPRDSATNAYIGEPISVVGMSGQSVDTPRVIGYKASRSKTMLPMKPGTIVVAYIQV PAMGTVTVNYFNTNKSSTKPVTTETIQKIAYNQTGSITFKDLGKDYTDYKAEVATALNGL TLDVGQATGFSYDNQSEVDGTAVINVTVNGPADFKPKDITYKIGGAKPTIADYVDKDLKG NVIDLAKVKIDESAVKWDQVGSYQVPVTYGGETHQATVTVQAVDKPQPVQYAYTVRTIDS QGRDLGRGYTGSGTSGSSISAPTISGYTLTSANNVSLISNGQQITFTYRLNSSTPVNPGT TNPNPGTTNNSGSTVTPSNSSSSSNNTTEPANNVPANAAQKGAVVYAINKIGLYNSPDFT KANRKGWYVKQPRIARPMFVVTGYERSQNGTLRYRVRDVNHSSKTAGQAGYITASQAYVR PVYYATKHATITVINPRGVNAYRKANLTGKVKNYRQGTVLRVKGIVKHNLTTRYVLTNGD YITANRKLVNMGRHKQVKSVKTKQAINRYSNVNLTKKNHSIAKNRTLKVYGYDYSHKNDV TKHGTLRHRVAGGYITANTKYVRAYQ >gi|238617817|gb|GG669604.1| GENE 957 1035244 - 1035837 536 197 aa, chain - ## HITS:1 COG:MA0410 KEGG:ns NR:ns ## COG: MA0410 COG0110 # Protein_GI_number: 20089303 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Methanosarcina acetivorans str.C2A # 10 193 8 191 191 150 39.0 1e-36 MTDLIEKSKKSILKAALSGKRLKFEDPDFKQIDKIVAANTERLRKFNYEATSEEARRELL TQITLQPINQDTVVRPPFNTDFGRHIFLGAGVFVNSDCVFVDLGGIYLDDGALIGSKVSL LSVNHVKDSNHRRDLIPKAVHIKRHAWVGAGAIVLPGVTVGENAIVGAGSVVTKDVAANT VVVGNPAKPVHRISDET >gi|238617817|gb|GG669604.1| GENE 958 1035841 - 1036584 785 247 aa, chain - ## HITS:1 COG:slr0315 KEGG:ns NR:ns ## COG: slr0315 COG4221 # Protein_GI_number: 16331886 # Func_class: R General function prediction only # Function: Short-chain alcohol dehydrogenase of unknown specificity # Organism: Synechocystis # 1 243 2 240 244 211 48.0 8e-55 MSVKDKVVIVTGASSGIGAATVELLVQQGAKVVFGARRQDKLEQVAQNLPADQIAYRTVD VSKHDDVVALVNLAKREFGKIDALYNNAGIMPTANLAEDHRNEWQNMLNINVMGVLNGIS AVLPIMHEQGYGHILATDSVAGHIAYAGSAVYCGTKFAVRAIMEGLRQEELKNKIRSTII SPGAVNTELYKSISDPKSAKDLVAAWQQTPDSSLTPEDLAEAVVYAIGTPSRVSVSEILI RPTDQEI >gi|238617817|gb|GG669604.1| GENE 959 1036654 - 1037586 794 310 aa, chain + ## HITS:1 COG:lin0450 KEGG:ns NR:ns ## COG: lin0450 COG0583 # Protein_GI_number: 16799526 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 21 310 1 290 291 270 46.0 2e-72 MSNTYSELRCIANNYMEGDYMEIRVLRYFIKVVQEQNISRAAQLLHVSQPTISRQLKELE DELGVVLFKRGSRSIELTESGDYLAEQARQIISLADKTRDNIRQPTDITGSITIGSGESQ TMMTIAKAIKRLGDQYPHIKVNLVSTNADDVWKRLKTGLFDFGMVMEPTEKRHYHFMTLP GEARWGLLMRQDAPLAGKSEVTPSDFKGAKLIVSHQKGVSDLLKDWLGSSQVEYQIVATY NLLYNASLLVAAGVGYALCLDGIINTQGTNLKFVPLMPLNTAKTNLVWPHGVSMSGAAKA FLAEVTKTLS >gi|238617817|gb|GG669604.1| GENE 960 1037868 - 1038461 352 197 aa, chain - ## HITS:1 COG:L85237 KEGG:ns NR:ns ## COG: L85237 COG3548 # Protein_GI_number: 15672844 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 1 136 1 136 188 99 41.0 4e-21 MNKGRVEAFTDAVVAIILTIMVLEFKTPETAQWEEIIKQLPYFFAYIVSFLFVGVAWYNH HYMFTLAIRISKKVYWVNNLWLFSMSLLPVATGWVGKFPQYSGPEYLYLFVFIFWSSSYL WLSNSIRKTPEHVNTSVSKKIESMFPFRFLSSFFFPLSIGITVIGIYFLPVLGITITFVG LIILSFLTPSDSDKLTK >gi|238617817|gb|GG669604.1| GENE 961 1039124 - 1041568 2387 814 aa, chain + ## HITS:1 COG:no KEGG:Fisuc_0924 NR:ns ## KEGG: Fisuc_0924 # Name: not_defined # Def: carbohydrate binding family 6 # Organism: F.succinogenes # Pathway: not_defined # 20 588 6 568 641 234 30.0 9e-60 MLDRKHRNLALLTATAIAGLFAFGLKSNTANAEDINVDTTTAIRSNAEHVASGGLYALQN ETTPGADLISPLKPRTFTQAPPDPGQLPNGLTEPGGDFLKVATTAQQVGAKVIIRLPDHY KTFPYGFSTMDDWLKQVDDMVTQAQKYKQDIYGYELWNEPNWTYQKINGRTQEDYFKLWD ATYKEVKKLDPNAVIVGPSTSAWDKGWMDKYFAHVTEAKTVPDVISWHLLGGGSEWTPAG FKGNVADLHALETKYGIDQNTKILINEYSEPQETAVPGKMIDYIQAFENVPQVDGADLAF WYNYGRMDNLLTDQQKPNGGYWLYKWYGDMSGQMDKTSTIDTNGDLASIASTTADKSQTS VILGGTSGDNTVNISGLSQAKFGQKAKVQINETPWYGVDTAVSEPKTIATGTVDVNNGTV QVPVKDMKASDGYQVIVTPADGSSTTGLQYTTQQATDPIRVEAEDGTLAGGARKALGSYA SGNYYVAGIDKADSSISMTVNALQAGDYKLEIGYADGYTTTATEKLTLNDKSLNDASFAP TTGWTNAVPNVNGTRKVLQYGTVHLNKGTNAFKIAKGDNNAEIDYAQFTLADSGAVTPGG GSGDSSSSSSSSSSSSVSSSSSSVTSSSSSTTTSSSSSTTTSSSSSTTTTAPSTSVSVPK SAAKKGSTVYAVKKINLYKSANFKAANKLATYAKRTRINRPKFVVTGYARSTNGALRYQV RAANGKKGYITAKASYVQPLYYQSVPKSKTITVIAKKGINAYKNSTLTGKVKHYKKGTQL KVKRLVKHHLATRYELSNGHFISGNKLLVAQGRY >gi|238617817|gb|GG669604.1| GENE 962 1044548 - 1047022 2052 824 aa, chain + ## HITS:1 COG:no KEGG:Fisuc_0924 NR:ns ## KEGG: Fisuc_0924 # Name: not_defined # Def: carbohydrate binding family 6 # Organism: F.succinogenes # Pathway: not_defined # 31 599 18 568 641 227 29.0 2e-57 MISHKNIVTWITAAAAAGLITVGLGGIRANAEDISVDTTSTVRAVSHVASGGLYALSDAN TPNTSLLAPLKLKTFTQAPPFGQQIPNGEPKAAGQFNVIQPAAHSLGTKVMVRLPDYYDK FAYNFDSMDQWKSHVTQMVNEAKKNSGDIYAYELWNEPNGYWKSPGDYGNGKSVDAGNYK SVTYMQLWDETYKLVKQLDPSAKIVGPSLDGLGASQMKWMQTFLLDAKKDGTLPDYISWH QWSASAYPGQAQALEKFELANGITKPGSTEPIPISINEYGAEQELGVPGQMVHYIQSFEN DKYTDSADLAFWFNYGRMDNLLTDQQKPNGGYWLYKWYGDMSGNIDTTSTSSENGSLASL ASTNADKSQTSVIFGGANGDNSITVNHLDASKFANGAKVQVNESPWYGVDTAVTPKTIET GTVQVKNGTATVSVKGMKASSGYQLIVTPADTAVTKDDIQYTQQQASDPIRVEAEDGTLT GGAKKALGSYASGNYYVGGIDKDDSSITMNVNALQDGDYQLEIGYANGNTTTATEKLTLN DKSLKDASFAPTTGWTNAVPNVNGSRKVIQYGTVHLNKGTNTFKITKGDNNAEIDYAQFT LADSGAVTPGDGSGSSSSSSSSISSSSSSTASSSSVTSSSTTSSSSSSATTSSSSSTTTT VPSTSVNVPKSAAKKGSVVYALKKVSLYKSANFKAANKVVTYAKKTRVNRPIFVVTGYAR SSNGALRYQVRAANGKKGYITAKASYVQPVYYQSVPKSKEITVIARTGVNAYKTSKLTGK INHYKKGSQLKVKKLVNYHLTTRYELSNGHFVSGSKLLIAQGRY >gi|238617817|gb|GG669604.1| GENE 963 1047177 - 1049561 1675 794 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1948 NR:ns ## KEGG: Lbuc_1948 # Name: not_defined # Def: lipoprotein # Organism: L.buchneri # Pathway: not_defined # 370 794 551 950 950 289 42.0 4e-76 MLSVHKSNYFKKQSIFLILVFVVFLLGIGAGIGFSQDVFLPNKVMAATNTESIDDWMPDK SLQQLVLWQLQQDDVMVNGSLISSADQITKEMLESDQFTVLYSGDPNVQLNNKAFFEDML NIQSLNGLQYAKNLKEINISPYMGAAIQWGVNPFQKGKLNDISALKNLDSLVSISIDMES VHDISALAGKKLDSDPTRAVSSFAYNNITDISPLKSSKDTLQDSLEVNHQAYVLPTIILN SNLKSYQMASFVTNIDGQNIPVTPYYASSSQTQYYRSYKSTANGGTATTAVPSITWTDLA SGAGTTSTGQKGGFMTFIWDQPIFPGGGDFAYDGGVIQPYLLDDSVGDVNAQFVDAKTNQ QLAPQQTISGKLGDSYNLSTNSNVQNEITALKSKYGYTSYTVSGSQTGTYQADSVPTVTY KFGNTPVVKKGSVTINFEDQNNHVIKDPVTKSGDAGSKFTLPDGLPASTISKDGKTYDLV GLKTGEKVPATYSDQNQSITYVYKAATGPTPGGGGSSSSTSSSSQASTSSAAGGSGSNSS SSVVASSSGSAGSSSQGSPVVLPDYAAKKNAVVYSLKPIYLYRHANFGKKERLAYYIKKP RVYRPMFVVTGYARSGNGQLRYEVKDVNHLSRTANKRGYITARWSYVRPVYYSKKRTRVT VINPRGIYVYSRKNLTQRGQLYRQGTILKVNGLVTHNLTTRFKLTNGKYVTANRKLVMIG KQHYARYVKTRRVISTYRNVDLTKRLKRISKGHIFRILNFDYSSQHQMTKHGLLRYRIDG GYVTANPKYVITVK >gi|238617817|gb|GG669604.1| GENE 964 1049877 - 1051337 950 486 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0137 NR:ns ## KEGG: Lbuc_0137 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 13 480 13 453 459 226 31.0 2e-57 MAALKATNINQWLDKATKQELREIVLKQAQTDDALYYELQNRFGDLSDKEKLSELRAYIR NIIGDNNDRGFIDYHDCIAVCDVLDDITHKAAKVAPTEDLNFAIQEVLMVIRSTIGFLER ADDSSGCTTETLDFAFATLEKLSKTAATVLSDQQKTALIKSAVQVFNLKIFDDWDNFRYA IFEKTMPLISTNSLKLMERAAAKISDRYAHAAPKDSDFFDDVDFTDNYKNFQLNEIKAYN ANLKSMGLISIGDFAAAKKVMAENITFNSVRKTAIDFYLSQKDFRTAEKLAVNGALSKNN NLDDQATWFDYLEKIYLQTKDYHKLAGVYKSRLLQPTWGSFNLDDYKKLKGVIQMHGDWQ QAYPALLTEFSQKLTPTDYASILSFEKETTKLMAIVEKVPSLVAEHGRVLFKQFPDKVTT LYYKALVNQDIGNTRKRYRELGRTIRHYADYGDKGMARYWCQQLIKQYPRRSALIDEMQK AYELID >gi|238617817|gb|GG669604.1| GENE 965 1051461 - 1051790 172 109 aa, chain - ## HITS:1 COG:no KEGG:GALLO_1711 NR:ns ## KEGG: GALLO_1711 # Name: not_defined # Def: hypothetical protein # Organism: S.gallolyticus # Pathway: not_defined # 1 106 4 110 113 74 40.0 1e-12 MNKDDIGLAFIEFDHHSGGKKRPVLILGETSDYYDAFSITSQFQTKSAQIQTVYFKIRQW QLSGLKKPSWVDTGHHLQIKKSTRIQVIGQLQIDDIARLILFLNSRNKR >gi|238617817|gb|GG669604.1| GENE 966 1051783 - 1052082 344 99 aa, chain - ## HITS:1 COG:no KEGG:pWCFS103_01 NR:ns ## KEGG: pWCFS103_01 # Name: orf1 # Def: DNA-damage-inducible gene # Organism: L.plantarum # Pathway: not_defined # 4 95 2 93 93 67 40.0 1e-10 MAASAKKKKRIQVLIDSDLYDDANEVLSDIGISQSTLINVLLKKVVAEGRVPFDLSQSKR DRLSFELHKAVQDSDIPIIKDQKEVARYLLENGDDSYDE >gi|238617817|gb|GG669604.1| GENE 967 1053190 - 1053519 243 109 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508835|ref|ZP_03938884.1| ## NR: gi|227508835|ref|ZP_03938884.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 109 1 109 109 200 100.0 3e-50 MDITKTRKQGNSIILTVPKSFNIGEGVPVRPRLTSNGIVYEFVKDDDHVWDFDTDILEDL TNQGYTGKELVTKFKESKKDFSKALDYLISQTEKEPEMSRSAFETEIGL >gi|238617817|gb|GG669604.1| GENE 968 1054107 - 1054319 105 70 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQRINHILRKVLVFAVLGGFAFWRGCGNQGNCQVQSVSCGFNPCFDRVNTGNKKEPSLNF GQFFGSLLDL >gi|238617817|gb|GG669604.1| GENE 969 1054746 - 1055567 725 273 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2313 NR:ns ## KEGG: Lbuc_2313 # Name: not_defined # Def: CHAD domain-containing protein # Organism: L.buchneri # Pathway: not_defined # 3 253 2 252 257 233 51.0 5e-60 MTSIKTILNQQYKTIQIEWLRYRNNPYDVQRAHDLRVSIRTLRGLIKFLKRRIPQVVYDS LNGDLSQSAKIFGPLRDLDVLMIQVGKFAYAHPEEETDYQGLFEGLYHQRNEEMQTTLTD TTQEVLATYLMQVKAQLDTLNFKHETDWDKSIAQEFKRRDHKLMKQYHQLDFHDYLHVHH VRKRAKTLRYSATYFSEFIPEKEGRILRKAKRVQDVCGTITDAHVIDGELRQLAAQTPNR DRQKLLLRIARSQRDIYMANKKTIIQDLDKAIS >gi|238617817|gb|GG669604.1| GENE 970 1055799 - 1056467 577 222 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508838|ref|ZP_03938887.1| ## NR: gi|227508838|ref|ZP_03938887.1| hypothetical protein HMPREF0496_1001 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1001 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 222 1 222 222 416 100.0 1e-115 MTQDRQAVLDAATRLSNSIDSADKPVDHFTFVSIVARMAQHDPLFKQQLLEGLHQEMLPS LFEHIKTDVENQERMNRLRKRARLSKTDQYFIKRQVVAYGSQLGWSGLGMNQVLPKLTVV NIPARDQQLYWEVYENDYCVTFHGKIVVYKLAVLAYLKEQIKFILEEKQEKVDERELLKS WQETFDSAKSMYRKKKGFTSSMKDQMRDEMKTLLDNIPTVDD >gi|238617817|gb|GG669604.1| GENE 971 1056670 - 1057692 776 340 aa, chain - ## HITS:1 COG:BH2227 KEGG:ns NR:ns ## COG: BH2227 COG1609 # Protein_GI_number: 15614790 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 337 1 338 347 144 28.0 2e-34 MTTMRDIAKIAHVSPGVVSRIINEDPTLRVSRKTRENVKSVIEETGYILRKSSRSEIAIL LALSQQRVIQDPYFSELLSGILSFCKQNNLKVVKTLWLPDKNDLYHLDRLDGVLVIGPFT TAAIVSMKKIARSFVLVDDNTTISGVNQVKSNFDAITTGILNDFLADHRHQISFVGGSIE RINRSGKIWDNLIDLRLSTYYEWAKKHSMIPDIINVGLTIADGQKAAVQLLQRRKESGYA FPNAIIALNDLIARGLADTFSESNIRIPEDVGIVSFDDLSITRIRKPTISSVKIPTDEIA NAAVRLLRDQINHSLLGTNIITVPGQIIYRDSFPKLVPEQ >gi|238617817|gb|GG669604.1| GENE 972 1057910 - 1059562 1229 550 aa, chain + ## HITS:1 COG:BH3683 KEGG:ns NR:ns ## COG: BH3683 COG3507 # Protein_GI_number: 15616245 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-xylosidase # Organism: Bacillus halodurans # 7 545 5 522 528 424 42.0 1e-118 MSNYATIKNPILPGFTPDPAVLGVGDDYYLATSTFNWYPGVQIFHSKDLAHWELQSYVFN DPAFLKLAGTDTPAGVWAPDLTYDQRTGKYWIVMCQMHNMNGNLFDQDNYAVYADAITGP WSKPIYLNSIGFDCSLFHDDDGKHWAVTLEWDTRKGYQHPGAIVLEQFDPEQQKLVGPTK RISRGGTDRGCLEAPHIYKHDGYYYLMTAEGGTGYGHGVVVQRSKTIDGPYESDPQNPII TSTPYRYFRRGDPDSLRLDLYNPKAPLQKCGHGSLVHTATDEWYVVHLSARPLPGTTNCT LGRETSIQKVAWTKDGWLRMKAGGTLAQPTTEGMKGVTVSDAPQAAGVDADFGTGQVDHH LMSPYGPRTEDWCSFDARPGWLRIRGRQSFFSQFEVSLLASRIDSFKSTVSTALDFDPIH YSQSAGLTLYYDNSNWLFARIYHSETLGGTALAIMKGEKGKKDEYILDRIALPSNHAELQ AKIDYDHVQFYYRVKGTDDWQKLGPKIDISFMSDEQTGGFTGLMGGIGAWDAYRRQSYAD FKYFKITPEE >gi|238617817|gb|GG669604.1| GENE 973 1059622 - 1060875 1414 417 aa, chain + ## HITS:1 COG:CC2315 KEGG:ns NR:ns ## COG: CC2315 COG0477 # Protein_GI_number: 16126554 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Caulobacter vibrioides # 12 417 5 418 418 124 27.0 4e-28 MAQENSTVGVLDSQQPKRPIKLGFALLIGPACWLGPYVGVSATLLPAKIGQLAPADKVPL VAAASAIAMTVATIANIIAGALSDVTRSKHGKRTPWIVINSILSALCLVALSMATSVTML LIVWGIYQAVLNAVVAPMIAQISDRVAPKWRGTISSFYGIGMAFGNYGSGIIASQFIDTT EVGIQVLAAFALIGGLLSAFLAKEPSNLDEPRVKFDAATIKQNFMFPTKGARDYYLALAG KLLMVTGQYVIVGYQLYIFTDYMKLGKAATAASIATMSSILMVTGILFTALAGPISDKMH RLKAPVALTTVLLGVGAFFPFFDAKPWTMFVYALVAGIGMGAYNAVDQALNVAVLPNPNS AAKDLGIINMANTLGQVFGPMIAAVAISTMGYKAMFPVETAICVVGGLLIMMIKRVK >gi|238617817|gb|GG669604.1| GENE 974 1061154 - 1061927 609 257 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2081 NR:ns ## KEGG: Lbuc_2081 # Name: not_defined # Def: abortive infection protein # Organism: L.buchneri # Pathway: not_defined # 2 255 6 258 259 119 33.0 9e-26 MNKSTSRYIWEIIGLIVVEDLIIFNPHYVLDPFNLSEAGAIAAQEIISFVIFVLINIFIV KVKINLIPTVSWGRILILAVPIYIVIVAAVQRIVTNTHLDVPLGITVGLGAGIFEEFFYR GLILGTLMRLFSKQTSKARQIWYPLLITSLIFGLDHSTNAFSQPAINTLFQVIQSFTLAL IMGALYIRPGSLMMSILFHGIWDFVGSVAVGSVLSTTTVNATFIVSNLVLDLILFSGAWF YLRAKKIPSIRLDRFYR >gi|238617817|gb|GG669604.1| GENE 975 1062280 - 1064955 2031 891 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0409 NR:ns ## KEGG: Lbuc_0409 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 521 890 248 619 622 168 34.0 1e-39 MHLRKNNVALITKTLVTFVISLSFMCVSALAAGYSGSFYNGGSQFVAKPNGVTAAMTLTG NKQGTGEGYPTSAGTTTLPINYDKWKSDGNTQFLAHLDISNNSGSAQPVNQEIRLTDLST KGVYISDTDKDALVSKLRDLTSKIQVIRIYLGNGDAVSYTSASTDSDWNNLKAKNWNGGF AIQITTPDGTTGNKLADKDTISLSIPLTVSDPTSESFSNFKMIQFSFEGGTLTQANLNPS FAKEVKDTVNNKPYLATQLLSRDPSGWKYQVLPDDVQALLPTAKDNPVIFDPFGVGFENA RTNQNAIPSFNAGTFYVNNLPIFNVVSKYGWSMEYVNNGGQEQNTMYSHYTYTWDNGGSN GPSFVDDQGKELPLTGDNYADYVSLRKVLDVRDWQMNVNGKFDASQGFGQWITNNSTIKD LDTAQKAGLKIDHSQVNTSKAGVYPVTFTVPDAKFADGNGDVQKVSKTVNVTVLTPNSYI LKGSEIGSYLNPSKYYVDVMYRTGDNDKNGFTVGNLTDSDLSIQDNSGNTPSSMTPGQTY KVVLTDSGKAKIMQQIKAKAGNDVKIDSALNDAYFTYTVPAADTVIARLSGSSTSKDTLD PSDYKVTFTGDAANNHAAYTPVANDLQLQDSNGNVVTNPVAGESYNVVLTAAGNKHIADL FSSTIKVITSGNGIFTRPTTSTGGSGTSTSTTPTGTTSSSSSSSSSTTANSSSQNSSSAT TQPGTATEPSTSVAVKGEAVYATKKIGLYKKADFKGNNRIKWYSKAKRVNRPEFIVKGYQ KDTNGKLRYRVQQYNPYTRKYVKGTKGYITSSTKYVVPAYYQTVPKSKKIMIINRNGVKS YKKASLTSKVRNYKKGSLLKVKKVVKYKYSTRYVLSNGQYITANKKFVIQK >gi|238617817|gb|GG669604.1| GENE 976 1065107 - 1065457 203 116 aa, chain - ## HITS:1 COG:no KEGG:LPST_P0013 NR:ns ## KEGG: LPST_P0013 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_plantarum # Pathway: not_defined # 1 113 8 120 131 121 53.0 9e-27 MDVVNNFFEHDYHDRGMVKWQGFYLSDHTAALNKQEAKDQKVYHPKSQQSLETITTILAE AYQRHRAVSLQLNELDANGNQLPDIQTHVYGYHSDKIIIDDEKAVSIDDIRHVERI >gi|238617817|gb|GG669604.1| GENE 977 1065471 - 1065791 281 106 aa, chain - ## HITS:1 COG:no KEGG:LPST_P0012 NR:ns ## KEGG: LPST_P0012 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_plantarum # Pathway: not_defined # 1 106 1 106 106 127 58.0 1e-28 MNNDLDIIYSRIEKLFKRMSRTRYWILVNNDPYDQSYNFFFNSQRQGERLKSVPLHKLIN YDLSYLEQVIKGLRSKTNLTIEFTGFAGMKWPSTQKVIQWRREQLE >gi|238617817|gb|GG669604.1| GENE 978 1065784 - 1067085 830 433 aa, chain - ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 7 428 11 426 426 337 42.0 3e-92 MFIDKEPHGVFFLIDNKSFYASCEAVQRGFNPLKIPLVVLSEQENTNGGLILATSPEAKR LFHLKANVSRQRNLPQDPRLCVVPPRMNLYIKRNLQINQIFTEFASEQDVWPYSIDESIV DMTHSWKLFGNTPREVARVIQKTVRKRLGLYTTVGIGDNPVQAKIALDVYAKHTPELIGE IHYETVPKTIWPINNLTDVWGIGNRTAKHLNRLGIHNMYELAHKNPYLLKQEMGLIGEQL FATAWGVDRSKVSHKPVTKSASLGNSQVLPRDYLGQQEIETVIKEIGEQVAARLRHHHKL ASCLSLSIGFSYAATAEDGRGGFHHALRLPPCNNNREIVKQLIFMFRQDWNGQAVRNIAV YTSRLTPDTHQQLDLFMNPNRQIKNEKLGYVIDEIHQKFGFTKLVYATSLTTGGTAIERS KLVGGHNGGNSYE >gi|238617817|gb|GG669604.1| GENE 979 1067621 - 1069339 1269 572 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508848|ref|ZP_03938897.1| ## NR: gi|227508848|ref|ZP_03938897.1| hypothetical protein HMPREF0496_1011 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1011 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 569 1 569 569 924 100.0 0 MKNLTKMRRLFFSVVLAVLSVLLLVNALPNKVGADDASAIYNGTVTNLDPNDNSSRTANG LIHKIWMTAKNNSGQTESSNYGTAQPGVTHNFLLEKGNYQDLYLHLRLTNQSENDPITIH NEMLNLPISHNFLGDANSHIVYGDTKPVSNPDNASIWYDFADGRNGTDHPDSGWDQIFAI SIKAGNVIPAGGSIQIDVPLKVIPDANGNVGKFTFADYSYNASAVYTSIQNWARVASPVE LNYRQPGYEGYFIAGTSSNRDPGHPSTLNFANNAQKYFPQITKSLNAIGYDNTNSFVDKA GLDNVFYTDGLQVVQLDAIPSATGKGTLADDLHNNGYSFLIPSVDYRWGFKANQEAKDYV YSVANSSPLADVKMPDGSGATGQMYDNKLLGSITLQVQQLLDASDRTIPVTKDGAWAPYD GVTFYGIDQSKLDKNPDGASYVVKKVDSNNNESAAPGNKVDTTKDGVYHVTYTYEVYDGL TVKKTITITVGKGNPTPPTTGTSNNGGTNTSNTNNNNNNSNNGNNSGNTNGSTTTTTKPS TSVGPNIAVKGEAVYAIKKIGLYRSTSFTLAS >gi|238617817|gb|GG669604.1| GENE 980 1070237 - 1070596 406 119 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0544 NR:ns ## KEGG: Lbuc_0544 # Name: not_defined # Def: lipoprotein # Organism: L.buchneri # Pathway: not_defined # 1 119 554 672 672 163 70.0 3e-39 MFVVTGYKRTSNGTLRYKVRDVNHGRKTAGKKGYITASRKYVVPVYYASVPKSKKITVIA KKGVNAYKSANLTGKAKHYKKGVRLTVKKLVKHNLTTRYQLSNGKYVTANKKLIIAGNY >gi|238617817|gb|GG669604.1| GENE 981 1070770 - 1071036 307 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508850|ref|ZP_03938899.1| ## NR: gi|227508850|ref|ZP_03938899.1| hypothetical protein HMPREF0496_1013 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1013 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 88 8 95 95 155 100.0 1e-36 MDPIIKSSAKLSKRNQITVPKVVRDVLNVKPTEYLDFEIRSSHITVTKHKESVWDQIEKK KKAYHIDGKIGNPEIDWGKDAGNESIGE >gi|238617817|gb|GG669604.1| GENE 982 1071257 - 1072339 1043 360 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508851|ref|ZP_03938900.1| ## NR: gi|227508851|ref|ZP_03938900.1| hypothetical protein HMPREF0496_1014 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1014 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 343 1 343 360 621 100.0 1e-176 MNEKEMDAYLDDFLTPYWQNFVDENNDGEQSFQSDEELEAMYALIKGFMSGMVVNGAQSI PQITEDDIQAAIGMLDKAPTDAEPEFDDLVDHTLTLGHLFLAWLSVSGSINLTGEQIDGV FGEDLSYLSPMDDMADIDRDEYHYDRADLDEYRSETANEVSRQAEKAAELFIDSKALNKL DGQVDEDDEDNIILTIQSLAVHLYGEYRQLPFEEWTGSALKAVLTGYIVKDAFLASKDYQ SFGPILKAFIDFIAGTQLMTATVGKSLKKAIDEATPEMIRLGQDETNYSETKQLILSVKE NKTDPSETLFKLLDDSSDDNPFDMLDQPDNKKGKPNVVSMEDWKDKPRKKGKKNKKPKKR >gi|238617817|gb|GG669604.1| GENE 983 1072648 - 1073331 621 227 aa, chain + ## HITS:1 COG:no KEGG:LVIS_0884 NR:ns ## KEGG: LVIS_0884 # Name: not_defined # Def: N-acetylmuramoyl-L-alanine amidase # Organism: L.brevis # Pathway: not_defined # 33 222 35 221 226 258 69.0 2e-67 MRKSKNVLVVCLTLLAVLVVGFTYKLSVSAAEKPTTQTVKSTKPMHHYLLVMGHGAGDPG ARGNGTNEAHFMRAKLLPELRKYAKEVKHSKVTFYNPKHDIVRDTLVYHKGSYKINKKTT VIMFHLDSGSGAYAHGGHVIIHRPTPTKRDRRLAQVIKKYVGLNPAYHGYSYRTNLRNCN VLRRRGIDYSLLETGFITNKHDFKKIKHNLDKIAKGYIEAITDEKIE >gi|238617817|gb|GG669604.1| GENE 984 1073431 - 1073883 467 150 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_5556 NR:ns ## KEGG: Pjdr2_5556 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 5 149 6 148 158 82 35.0 6e-15 MKWLTSFLKLVLVGLGLGVLLLCVLAFPALLKKLGVIYPQYGFERLLFMTSLYTSAILFY VAGINAYRILNLINQHNVFSVTAINAIARIKKMILGMGICYTLFLPFIYRVADSEDAPGL VLMFGVVALVPYVVSVFAAILEKLAKQVVL >gi|238617817|gb|GG669604.1| GENE 985 1074068 - 1074673 303 201 aa, chain - ## HITS:1 COG:BS_yxbF KEGG:ns NR:ns ## COG: BS_yxbF COG1309 # Protein_GI_number: 16081036 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 2 71 193 263 380 60 40.0 2e-09 MEEKVDRRVIRTRKAIQKSFEELATTHDYHDITIKELAEKANINRKTFYLHFDSIEDLVN SYVNEVTQRLVSLFKQRSFKENYEHPGQNLTELISLLQESKDFWSRLLFSDEYSFFTRKI ERMVAKEMTQSILASFSINRDDAKLCANFLIQNTLSTLRFFINDQRNTDYDQIQNKISRL NTFGISTFLNKFSSGPQIENR >gi|238617817|gb|GG669604.1| GENE 986 1074887 - 1076008 694 373 aa, chain + ## HITS:1 COG:lin1613 KEGG:ns NR:ns ## COG: lin1613 COG0006 # Protein_GI_number: 16800681 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Listeria innocua # 8 367 1 361 365 130 27.0 4e-30 MNSLQTEIKHRITTLQNNLQDNDLDAYVITDQEDIWYFTNINYKSEQRPFLFVVYPDRKP LFIVPKLEVDHFTVPYFDYDLDHYFDVTSRSGQNWYEVLTSYLGGLSKVGIEANGQLLMT HFTQGINWETKFLVQNQRMIKSDYELDKLQYVSDICSSVVQKTLEMSKTGTKVSDTYKLA MQVGAEEMTKHFSLENRTINAVWPSEYSFMPHSIPDMNAKIGAGPNINIALFVIQGYAAE CERTFFTEDPTKEEVGHFNQMMNARKLFLKHLKPGEKASDIEKTVDSYFAEEGVLDSVLH RPGHGIGLNNHEWPTLSLGNDMVLQENMVVSVEPAIYFKNQGGYRHSDTVLITKDGYKLM THAPTSLSELTLR >gi|238617817|gb|GG669604.1| GENE 987 1076022 - 1076897 646 291 aa, chain + ## HITS:1 COG:SPy2155 KEGG:ns NR:ns ## COG: SPy2155 COG1284 # Protein_GI_number: 15675897 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 13 289 33 312 313 149 31.0 8e-36 MEKNETLTIYRHRYNWLRKLIVAVIYGLFSAIGINLFLSSAHSYSIGIPGIAQLLHGLLA LNQINFSIAGLVVLLNIPMVIISLIIFGWDYTIFSVVAVISNVVFLKIIPEEKLISEQIT NTLVGGVIIGIGIGLCFRNGFSTGGTDVIVSFVQQRFRKNIGFVNIIINGFILGATAIFF GISGAIYSLLGMVVTSYMMDKIYIQQSDVMLIIFTKKSAMLANHLRQYTHGATVFNGRGI YKNQETDMVITIIQKSEISFFKDLILKIDKKAFISVQTTDLLNGNYIRNFY >gi|238617817|gb|GG669604.1| GENE 988 1076986 - 1077429 640 147 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0210 NR:ns ## KEGG: Lbuc_0210 # Name: not_defined # Def: GCN5-like N-acetyltransferase # Organism: L.buchneri # Pathway: not_defined # 1 147 1 146 146 83 33.0 2e-15 MEINILNQHTTEKEKWADIRQQITTFKWGGAQLTAKKMAGTMGINERVIVAIDHKKVVGI GSLVRQDIADLPQTPFISAIYVDPDYREKHLGTQIVKAAQSTAKQLGFKDVYVISGLDNY YEKMGFNYQGDVTDFMGRKMKLYHKNI >gi|238617817|gb|GG669604.1| GENE 989 1078054 - 1078350 357 98 aa, chain + ## HITS:1 COG:no KEGG:PPSC2_c2024 NR:ns ## KEGG: PPSC2_c2024 # Name: not_defined # Def: protein # Organism: P.polymyxa_SC2 # Pathway: not_defined # 1 92 1 92 97 69 45.0 5e-11 MDNMIDKIKKATQSEPKKPEQQFMKLIEEVGEASQAYLSSEGASGNKYKHLDQSNVKEEL VDVLLVTFALLSKVGATDEEIEELINRKVDKWIHNQNH >gi|238617817|gb|GG669604.1| GENE 990 1078456 - 1079202 379 248 aa, chain + ## HITS:1 COG:SMc01798 KEGG:ns NR:ns ## COG: SMc01798 COG0639 # Protein_GI_number: 15964990 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Sinorhizobium meliloti # 1 183 1 184 246 70 30.0 3e-12 MKIAALYDIHGNYPALKAVSEQLDHLQPDLIVIGGDIVSGPMPLETLQLIDQLSKKFNTM GISGNNDQDVVDAYNGKRLFLSEHAQDQIRWVADQLSERQILELKRLSLNVTVGDDFFCH AVAKDNTTVFTPHSNVATIKTLFRSVRSPFIICGHTHLQFKLTIGHQQIINAGSIGMPFS DQEGAQWLWIVDNQQFLFKRTRIDKSEAVRLIGSSSYPYVDDFIEQHVKNTMSLSVAYQM LDKMMIDR >gi|238617817|gb|GG669604.1| GENE 991 1079456 - 1081123 1606 555 aa, chain + ## HITS:1 COG:BH2903 KEGG:ns NR:ns ## COG: BH2903 COG0366 # Protein_GI_number: 15615466 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 1 555 1 559 561 610 54.0 1e-174 MSKEWFKDSVVYQVYPMSFQDSNNDGIGDLPGIAERLDYIKKLGADVIWLNPIYKSPNKD NGYDIADYKAINPDYGTMADFDKLLSETHEKGMKLLMDLVVNHTSDQHEWFKESKNSKDN QYADYYIWRDPVDGHEPNNWRAAFGGSAWTYVPARGQYYLHLFAPGQPDLNWENPEVRQS VFDIERFWLDKGVDGFRMDVINLISKPAGLPDVPGVATAGTTLAFVADGPRLNEFLKQMN EEVLSHYDVMTVGEMPGSTPEDAIKYTGLKSNELNMVFQFEHVLLSPNPDVRLDKWNDEP VKLPELKVALNKWQKALDGKGWNSLYWNNHDQPRAVSRFSNDDPKYRVRAAKMLGTTLHM MQGTPYVYEGEELGMTNAHHTKLNQYEDLESVNAYHELVDQKHIVDGPTMLKYLANMSRD NARTPMQWDSEANAGFSKVTPWYALNTNYKEINAEAELKDDHSVFYYYQKLIKLRHDNEI IRRGTFEELDPKDDQVYAYRRHYGDQTLLVVSNFTDQTITRDYDQKDASKLLIGNYDDDE GTTLRPYESKVYLFK >gi|238617817|gb|GG669604.1| GENE 992 1081526 - 1082599 746 357 aa, chain + ## HITS:1 COG:SP1600 KEGG:ns NR:ns ## COG: SP1600 COG0477 # Protein_GI_number: 15901440 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 5 341 34 375 383 120 28.0 4e-27 MARSFPGIPIAQLDTIATVQQFTVMLFLLASGTISRKIGIKKTINIGLLITGIAGVFPFF SNNFVAILISRLLLGVGIGLFNSLAITVIDLFFQGNNKSQMLGFRSATEQIGVSILNLVV GFLILINWHASFLIYLLAFPIMAFFSKYVPEPPIPTESKNVRQRVNFKVIALTILMMVIV ICSTAVIVQIPNIIVSDKLGSATTASLIISANTLAGMVMGILFGKVYQIAKKFTLTIGIL FMALGAFIIVIGPNSLVVGLGAIVCGLSYPLVGSYAFNLLGTVAPAGSETLGNSVLLIGA NIGSFVTPVALSGLSKLNDLNNQASPFASIFWILIALSAFIFVFQVRMLKKRNSVTS >gi|238617817|gb|GG669604.1| GENE 993 1082900 - 1083907 612 335 aa, chain - ## HITS:1 COG:BH1516 KEGG:ns NR:ns ## COG: BH1516 COG1609 # Protein_GI_number: 15614079 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 4 328 5 333 343 170 34.0 3e-42 MGVTIKDIAKEANVSIASVSRILSGKSGFNSKKTIKKVKDIAKKMGYRKNTAAVELVTQS SKVLAVIVSATKTNFANQIINGIHEEAYKHGLNVIIIYAGENDPQRQFEAVRTVIERSVR GILLLALDLSDESYNLLKEAGTPYIFLSISNNRGFPFIASDDYLIGYQSTKYLIDKGHQN IALTGLETTSYVGKKRIKGYLDALNEDGIIPKPEWVIDGSFTYEDGVNTLKSLGKSSEIT GIVACSDFVGLGLINQASAWGIKVPDELSIISVDGTEVCELVRPNLTSVTQSFYEMGTLG VRYLIESNQDDHYKKFTGLKIEERQSTKRNGKILG >gi|238617817|gb|GG669604.1| GENE 994 1084186 - 1084596 165 136 aa, chain + ## HITS:1 COG:no KEGG:LCAZH_0367 NR:ns ## KEGG: LCAZH_0367 # Name: not_defined # Def: major facilitator superfamily permease # Organism: L.casei_Zhang # Pathway: not_defined # 1 124 329 450 460 70 33.0 3e-11 MLILAEIGLALSHGQYESWVIGGISILISIGTEAFNTPSNTLIMSSVPTDLRGMAGASNS LAREFGMVLGTTLATSTFYGSLSLFVGRTSLTATGQPHHYLFFAQSVAYCVATLLLILGL WIIRPAKMRAADGDQS >gi|238617817|gb|GG669604.1| GENE 995 1084810 - 1085922 1014 370 aa, chain - ## HITS:1 COG:L124252 KEGG:ns NR:ns ## COG: L124252 COG0620 # Protein_GI_number: 15672700 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Lactococcus lactis # 11 369 8 369 369 387 51.0 1e-107 MTAKTQLKYPYHFDMVGSLLRTDALKNAHEQYDQQLITEDELKQVQHAETKKIVDKQVAL GFKDVTDGEFNRNWWHLDFWKSLTGISQEFKTTVSFKGGGNKLHSAQLEGKVAYNPDHPF FETFQYLNSITPDGIIAKQTIPSPTLLFGTNWRDFYDDWDEYLNDLSAAYHDTILHFYQL GARYVQLDDTNWAFLISQLNATKDDPIEHQKYEQQAADAVRLINHILKGLPEDLTMTTHV CRGNFHSTYVFSGGYDVVADYLGKLNYDGLFLEYDSGRAGNFDPLGRIWNGDQNKRLVLG LVTSKSPELENKSELINRINQAAEKVPLENLALSTQCGFASSTVGNKLTQEQQWEKLRLV RDTAEDIWKD >gi|238617817|gb|GG669604.1| GENE 996 1086307 - 1086933 544 208 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508866|ref|ZP_03938915.1| ## NR: gi|227508866|ref|ZP_03938915.1| hypothetical protein HMPREF0496_1029 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1029 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 208 15 222 222 368 100.0 1e-100 MFIKRYGMLTVAALTLGIAIPATVNAANTNHHLSTQLLKTGSKHSTNKKSNTLTDRQRQH VAKIVAKKTHLTKETDGTIVETYKDADLYGAIKKVNPKVYKQLTSFADNLSSTNTSTRIV WLEKPSNGDINVFPSQNSAMLYRTLGSGYDMLKAEYNLAGGTHTVNLRAAYKHIQKIVTS PIAATPGSMITVRNWKSVEIEVPNKTLN >gi|238617817|gb|GG669604.1| GENE 997 1087323 - 1089311 1484 662 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0409 NR:ns ## KEGG: Lbuc_0409 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 361 662 317 621 622 168 40.0 1e-39 MNTVGLTKRHVVIKLILIAVAFLLFIVTAGRHASADDTSAIYAYTGEKSVQQKAISDGIE FNTQLIVNGEYGPYPLRNFATQKSDAIVDMDKVTSLAQEVTIKNTTDKDYTISSYQVSLP RWINPGSQVVAARPFSEETQNGLTTRWFSYVNDQNDDPTKLRSFNITGKLPAGQEYKLEI PLKINDPKAVKVGDTFNIDNTMHNSGISIYSYFRFGKAINDSNGNSTLSSTGRYIATIRD KNRYLMLPNNIQRLMPKMNDASDPAAKNELRINNFPSGSNEVDFNSARDTKLYTGGLYFV QLDRIKNAVRDEGYSVAVNSGTKKMYDFYSYNTSVGSPITDPNTGKPVDVSGKDGYGTVY VELRQVIDAHDSTINSGSTWKAADNGKIVDHSGKQVDLTSAADVKVTGSVNTAVPGKYKI TYTYLPDNVSKTITVTVTGGSGSGSSGNNNANDGSTNDSGTSGNNSNNSGSNSNNSSGNQ PNVDSNTNGDNSSKPVPSDGPQVAVKGEAVYATKKIGLYKKTVFNKNNRIKWYSKAKRVN RPQFIVKGYLRDNTGKLRYRVQQYNPYTRKYVKGTKGYITASAKYVVRVYYQSVPKSKKV TIINRKGVNVYKKLALTQKVKHYKKGAILKVKKVVKHKYSTRYVLNNGQYVTANKKFMIA KN >gi|238617817|gb|GG669604.1| GENE 998 1089495 - 1089758 115 87 aa, chain + ## HITS:1 COG:L120335 KEGG:ns NR:ns ## COG: L120335 COG1925 # Protein_GI_number: 15672099 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Lactococcus lactis # 1 86 1 86 88 78 53.0 3e-15 MLKESFHTVSETGITARPALDLISTADDYESKINLQYHDKIVNLKSIMSVMSLGIGKNAD IVISADGEDEEAAIADITNKMKELGLV >gi|238617817|gb|GG669604.1| GENE 999 1089814 - 1090440 362 208 aa, chain - ## HITS:1 COG:L0470 KEGG:ns NR:ns ## COG: L0470 COG2801 # Protein_GI_number: 15672806 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 10 200 75 266 272 159 43.0 4e-39 MREHDWLCRAFNRQKRKYNSYKGTVGVIAPNRLKRRFKTDRPYQKLVADVSEFRYGNKSQ DERVYLEPILDLFNGEVLAFNISDHPTVEFAVKPLKEALNQIPVLDYRTTVHTDQGFQYQ HRHWQNVLKDHRAFQSMSRKATCLDNAAMESFFHIMKVEVMDEQFETKAALIKAMTEWID FYNHRRIKTKLDGKSPVKYRELTAQKAA >gi|238617817|gb|GG669604.1| GENE 1000 1090692 - 1091219 219 175 aa, chain - ## HITS:1 COG:RSc1437 KEGG:ns NR:ns ## COG: RSc1437 COG2963 # Protein_GI_number: 17546156 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Ralstonia solanacearum # 1 170 1 169 177 80 35.0 2e-15 MTKFNLNFRIKVVTEYLSGKGSPSLARKYGISTHSIILDWVHRLERRGIEGLKDRSMSQE YSSQFKVDVLNWKKQNQASLPVTALHFDLSSPSTIWQWERRFKESGIAGLERKRGNPKHM AKHKQNKPQPAKTQTPAAELKQLKQENQMLKIENEFLKKLDALARKKSKHTNSSN >gi|238617817|gb|GG669604.1| GENE 1001 1091660 - 1094098 1453 812 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1948 NR:ns ## KEGG: Lbuc_1948 # Name: not_defined # Def: lipoprotein # Organism: L.buchneri # Pathway: not_defined # 432 812 497 950 950 299 40.0 3e-79 MLSKHYLLNFSKITLYGIFFMSSFIFASSMDSRCIFAADLTSQTNMNTNSVGQMNDLNNK ITIDKNNFETYFQRSSRTSYDPQNGAILLYPLNNRYMTADGKFDYRPGINDGADNPALAG SVYLNKNLIDMKNDFSLNGSISIKPDFRRKASLKNTGITDEGDNSYQYGDGFSFAFRPAD SAPVGVSGMGLGMTGIPHAFGVALDFYHNKVYANKANGGELLLSDQSVPNVGFAYTQNIP GFYDKVGYTIGDGVDISGSDLDWMTRFDSQGEHLLGYSDLTKDGNVEKMPFKLTWDAKNN ALHYNFQDANQHQYEGTKVFSDRPDLTNFAIAGSGNAAQAEYRINIDKIQYAAYGIVNAQ YLYQNNENDQPVEIPGVPAHQTSGSLNDNAKISSKLTDVVSSDATESQKQSLSEYHLWKV EGFPTKNLEDYYTLPFSGGVAQLPFSDVTQNVKLYYRKDSLLSVVINYVDENGKKIADPE TIQGSFNTEKDIPVKVINGYSPDTSNPKTVRFGTLGSDGKVITQIDLKYHQNSGGASSSS SVSSSASSSSAYPGTSESINGSSSLTTSSASSSSIDVSDIPKYAAKENAAVYALKNIYLY RNADFNSKERLAKYVKKPRIYRPMFVVTGYARSTTGRLRYEVRDVNHLSKTAGKKGYITA NWNYVRPVYYAKKQSIITVINPRGVRAYRNAKLAGRSAHFRQGSRLHVKQIVKHNLTTRF ILTNGKYITANRKLVKMGKHKQVRLVKTKRMINRYSNANLTKKNLHIVKNKRLKVYGFDY SHGNNMGKPGALRYRIVGGYITGNTRYIYIYK >gi|238617817|gb|GG669604.1| GENE 1002 1094267 - 1095004 263 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 8 240 5 238 242 105 32 5e-21 MAHLSTVTALITGAAGGMGKAFVENFIQNGARVVFTDINETTGKTIQAKLGDHSLFLKHD VTSVADWQRVIETGEANFGPFNVLVNNAGIDIMKPITDMTPEDYDKVVHINQYSVFYGMK AIVPSMKRAGKGAIVNISSIGGLIAILNTIAYGASKFAIRGMTKDAALDLVDDHIRVNSV HPGMVETPILKNIPAENKAKIAQGVPMKRLGKPEEIANVVNFLASDKSSFITGQEIVADG GYTMV >gi|238617817|gb|GG669604.1| GENE 1003 1095201 - 1095362 161 53 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508874|ref|ZP_03938923.1| ## NR: gi|227508874|ref|ZP_03938923.1| hypothetical protein HMPREF0496_1037 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1037 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 53 1 53 53 86 100.0 7e-16 MSKHVQIVSNNGRVSMSAELRETDFLQAGDQVTFRTDEQGQIIIEKTPDDYQE >gi|238617817|gb|GG669604.1| GENE 1004 1095699 - 1096109 124 136 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508876|ref|ZP_03938925.1| ## NR: gi|227508876|ref|ZP_03938925.1| hypothetical protein HMPREF0496_1039 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1039 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 136 8 143 143 252 99.0 8e-66 MKFRRSFFAVTLATFAGVGVFAGFNQSTIAASWHRGTPKALRGSWTHKDKAPLGSDAITV TRNKLDWASSGMQAHNIRNPRWKYLGNRKYVIDGYETFHPYTKKGFHEKTVLGRRGHHLV MYRSVHSKSGTYFHRS >gi|238617817|gb|GG669604.1| GENE 1005 1096337 - 1097050 545 237 aa, chain + ## HITS:1 COG:BH2679 KEGG:ns NR:ns ## COG: BH2679 COG0819 # Protein_GI_number: 15615242 # Func_class: K Transcription # Function: Putative transcription activator # Organism: Bacillus halodurans # 1 222 1 221 224 75 24.0 1e-13 MSLSEEMIKEARPYLVASEKHPFVQGIITGKLTPAQLRYYDEQDIAFEYNEVAVISALIN NSTTTDQALLFQKRLSLQLTMLRDWLKREPNDMTHDWASLKQIKIQPINQLYRQHMVGTI ATNGVLQILPSFAAGEWLYIELGKYMQNQARVNDEPFHSFLTLANQDFLGPDGFIERFFN IIDQEAKTASPQEQNQAKDTFLKSCLLEWYFWDAAYKQTTWDDWRTVAPEGQDQPNL >gi|238617817|gb|GG669604.1| GENE 1006 1097477 - 1098016 381 179 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1946 NR:ns ## KEGG: Lbuc_1946 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 19 168 9 164 175 65 29.0 1e-09 MGKEDSVKLKISRELFVGMACFVGGMALFTYKPSEVQAKKVYYTNPKALRAHTWYGHTNA YSGKWLYERIHFSKHTVYFANKIHKDDKWKVSHIPAKRYVISKSHGWYFFGAKASDDITT VQINRRKLGGSNRLVLSVFDQSNDKGGYQEQAPYKVWDYTTSLGTAKGWYHKINTVPSM >gi|238617817|gb|GG669604.1| GENE 1007 1098241 - 1098525 124 94 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508879|ref|ZP_03938928.1| ## NR: gi|227508879|ref|ZP_03938928.1| hypothetical protein HMPREF0496_1042 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1042 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 94 1 94 94 156 100.0 4e-37 MKSKKTNQSASLIPKYPNSRLRVSEGILVLIFSRIIIPYWYREHNLKDVRSMAKQPYTKA RQQVNKKWDQAHKEQIQYISRRSQAQGFIRNFAT >gi|238617817|gb|GG669604.1| GENE 1008 1099078 - 1100853 1532 591 aa, chain + ## HITS:1 COG:CAC0742_2 KEGG:ns NR:ns ## COG: CAC0742_2 COG1404 # Protein_GI_number: 15894029 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Clostridium acetobutylicum # 324 573 1 255 276 224 46.0 3e-58 MQWGKTSLSNRVFKGLLSLSLAGVTLTTSQVVTHAQDTSDQNLAEELAPKAASYGYYVDL YKNNVKTNLDPNINPGIGVFQNTFSNYWSGDGTRKNPTILDENVEKTAQITANVSADDAL RSYLTDRRDSPYNVISGLGPYADEFIQKSDAHTNYTRLPSSPLPASDKGDDGNTTPWASE DSDLGPVVKLIDLTAKSNFSSSGTPKQYFKYIRPYRQSNQVKVPSVLADVFAAAPQDDYD FPSGHTTQGFEAGLSLAYIFPQRFQQLVTRSSEIGYDRVLVGRHSPLAVIGGRILGTAVT ASVLNDPANKDLIDQAKSNIQSKLTADDANSQDSYGDYQKNLKAYTERLNYGFEPVGDTN QPMRVPKGAEVLLKTRFPYLSDLQRREVLYTTGISSGYPMTDDTEGWGRLNLFAAGNGFG NFLTNTTVNMDAKQGGFNANDTWKSDIGGRGGLTKQGTGSLTLLGNNAYQGDTVIEAGTV VAQNEHALGAGNLNIKAGTLQLSTKKVQVKGQYQESSSGTLETGTGQSLNVSGNAHLNGK LIVDGRQRPAHRQVIFKAARIQGKFKHVQLKGLAKNWHLSYDQHKVTLVKK >gi|238617817|gb|GG669604.1| GENE 1009 1101020 - 1101364 254 114 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508881|ref|ZP_03938930.1| ## NR: gi|227508881|ref|ZP_03938930.1| hypothetical protein HMPREF0496_1044 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1044 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 114 1 114 114 195 100.0 9e-49 MLEITYFIKQNEKDPLLDIFRSLVTSQSRNNHKAFFKDKTLNITQIQTAADISAIKNGGV QAILKKNGVKSLPIVTVNQKIRKIGQLLEISELEDLIDGLSIQVDEETRNKLHP >gi|238617817|gb|GG669604.1| GENE 1010 1101564 - 1102760 755 398 aa, chain - ## HITS:1 COG:lin0946 KEGG:ns NR:ns ## COG: lin0946 COG2807 # Protein_GI_number: 16800015 # Func_class: P Inorganic ion transport and metabolism # Function: Cyanate permease # Organism: Listeria innocua # 10 387 15 392 405 221 37.0 3e-57 MQKSKNRSLTQILTVLLIILIGANMRTALTAVPPILTNISSSFNLPDWFLGSLTTIPLLC FALISPFVNRLSRKFGMLTTIIAALIGLLIGSFIRIYSFSTLLIGTLLIGGSIAILNVLS PTMVAEFYPRKIGLMTSAYTLSMTIFSALSAGLSAPISSKIGWQPMLQWLVIFPILTLLI AFGSRGRKHPQQSSRSSFNPTAQLKPVWRQPLAWYLTVFMGLQSFLFYTILTWLPSIFIA HGINQNRASLLLGLLQLASLPTAYFIPNLAGRLTKQAPLVWTIFGLFILGLGGLLLNTAS MTIAVIICILLGFATSSAFSMSMILFSLKTANPYETSAVSGMAQSIGYLAAAVGPLLSGL IHGAIASWWPVIVMMLIVVVIQTSFGLLVDSKPSVFGE >gi|238617817|gb|GG669604.1| GENE 1011 1102819 - 1103244 514 141 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508883|ref|ZP_03938932.1| ## NR: gi|227508883|ref|ZP_03938932.1| hypothetical protein HMPREF0496_1046 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1046 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 141 1 141 141 215 100.0 8e-55 MAADRQLLKQIIILNRGIRRTERRIIRKHARQNGLSPNQLLLIDTLEDFPNNSVMGLAEI LELNKSTISTLVSQLLEQRLISKQLDPQNKSRFILNDTSKGKHVAAGIYDNYLDELIQTF RLDQLDLAGIKKVLEKMESNH >gi|238617817|gb|GG669604.1| GENE 1012 1103513 - 1104553 887 346 aa, chain - ## HITS:1 COG:SP1855 KEGG:ns NR:ns ## COG: SP1855 COG1063 # Protein_GI_number: 15901683 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Streptococcus pneumoniae TIGR4 # 1 346 1 345 345 412 59.0 1e-115 MKTTLFVKPGKVTVKNVDKPVIEKPDDVILHVVRACVCGSDLWSYRGLDEKAANSENNGH EAIGIVEEVGKAITTVRPGDFVIAPFTHGCGHCAACRAGYEGSCQSHSDNFSSGYQAEYV RYQHAEWSLVKIPGSPVDYSDGMLNSLLSLADVMATGYHAARVANVKPGDTVAVVGDGAV GLCGVIAAQLRGAKRIIAMSRHEDRQKLATEFGATDIVPERGDDAVKKVMALTNGDGADA VLECVGTELSTDTALKIARPGAIIGRVGLPHTAKTDLAAPFYQNTAFAGGPASVTTYDKS VLLKAVLDGDIHPGKVFTERFGLDKIDDAYQAMVKREAIKSLVVID >gi|238617817|gb|GG669604.1| GENE 1013 1104770 - 1105600 722 276 aa, chain + ## HITS:1 COG:L58643 KEGG:ns NR:ns ## COG: L58643 COG1968 # Protein_GI_number: 15674174 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Lactococcus lactis # 2 270 1 276 284 268 53.0 9e-72 MLDIIKAVILGIVEGITEFLPISSTGHLILVNEFIKMQESTQFTDMFNVVIQLGAIMAVV VLYFHKLNPLSPKKDPFEKHATWILWFKVIVAVLPSVVLGLLFNDWMDAHLMNWEVVSAM LLIYGILFIVIENRNANRRPRFTDLNNLPYQTAFIIGMFQLLSLVPGTSRSGATILGAIL IGTSRYVATEFSFFLAIPTMFGASLLKVYKYFDHGGTFNGTQSIVLATGMIVSFVVAYLA IRFLLNYIKNNNFKIFGWYRIVLSLIVIAYFGLIAR >gi|238617817|gb|GG669604.1| GENE 1014 1105723 - 1109067 2797 1114 aa, chain + ## HITS:1 COG:MA4289 KEGG:ns NR:ns ## COG: MA4289 COG3291 # Protein_GI_number: 20093078 # Func_class: R General function prediction only # Function: FOG: PKD repeat # Organism: Methanosarcina acetivorans str.C2A # 95 369 618 936 1734 99 32.0 4e-20 MKNFKLTAAALGLVLGLGASVNVDNGLFEQPARAETVSTAKTVQKTFSDQTNFDWTYNTD GTATLSGFNNGTVVSEPFEADIPDTITHDGQTYKVTSIAPYAFWQQNNLIKVVMPKYLTT IQDNAFIYHADLQQVDFSKATNLTTIGDQAFFSSGPTDGINLPDSVTTIGNSAFASSQAK SIHFPAKLETIGKQAFASWPGTDPITLPDSLTSLGDGAFIYSQIPSVTLPANLTRIGSQA FLHNPNLTKVVLNSKLTQIGSQAFLYDDNLSDVNWQDASSLETIGDNAFTFTGLKGSIAF PDALQTIGSQAFLGNKLTTVDFGQNLKTIGDAAFAYNAINNSLVIPASVQSIGSLAFFGN HLTQVGINGTPTVATDSFSYNRITKYAASNATISSGAVQHQTATAFDDSPTLSINSLFNV NFTGTTQSKIAISNLTNNVTYHQDSGTFTIPETTNQFEFDWTLTAANGQVYTGHYTVVHE IPDIRAFNSQIYVGSSWTAQDNFNGATINGKDLELGEGGIQYKVTNAANNEPVDTVDTSK AGKFNVTYFYGTSAQRTVTVDVLPQANLIYTLSGDQEGTYTGNAQSLDLGKYSLNLSNGE SYTLKAGDIAVKEGNLTGAGTYQIVLTSQGLDNLKKDVGAGANLTGSSSATFTITPKTVT PTLTGNEAVAYDGNAHKPTAGHYTISLDNGEDYSLKDSDIQIVNQPDGVTQSGTYDVTLS QSGKNDIQKQIGANYQLANVDTKAVFTINKAADAKPVTVKYVDESGKEIHKPQIITGKVG EAYDTTTKTYQISIDGYTLNQAKLPTNEKGKLSDKEQTVTYVYTKNTTPSTPSGDTGTAT PTPGSGSESGSSSSSSSTSSSSDSALESSTPSTSTQQKPLLIAKKGAAVYSLKKIGLYSS KNFSDKARKTWYVSKPRIYRPMFVVTGYTRSSTGKLRYKVRDVNHLTKNRNKTGYITANW QYVRPVYYAAKHTTFTVINPRGVNAYRKVNLTGKVTNYKQGTVLKVKGITHHNLTTRYIL SNGQYITGNRKLVQMGRHKQVKTVRAKGAINRHRDVNLSYRSQHYSKKQQKVFKVYGFDY SRGNSVTKHGTLRYRVAGGYITGNAKYVRIIDSK >gi|238617817|gb|GG669604.1| GENE 1015 1109413 - 1110492 876 359 aa, chain + ## HITS:1 COG:no KEGG:LAR_1695 NR:ns ## KEGG: LAR_1695 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 77 355 117 404 411 84 28.0 7e-15 MTNINYQAYFSDINQLLKYANEHYLPAITAAVSQFSEYDQALSEADRNRRGGQFEKDKLT IEGNTIVTPDLRVGRTYRFKRQLVGAQVGSYHYGESLVRRMNLRDGDIVKFKLSNQVPPE LELVQRNELDDPRKIVRKKVIVERYQQGKLVVRRLHDGKPILEGGKPVTIQLSPNDVRRD NVQVNDVIEVAYYVDQGSGRARISWIYRNETNQTVKPEPKPHSAYTTHKAKSTDVFTPKI AFDLTDKTVLMAGYAAHREEAAALVKAHHGKLIVFDHTSSGKGKGIESNLATAVKHADIV IVMLHAVSHETANKAIAHAKDFHKLVATSNINSPLSIEDAIKRALNREPVYQQSSHVVE >gi|238617817|gb|GG669604.1| GENE 1016 1110704 - 1111621 525 305 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508889|ref|ZP_03938938.1| ## NR: gi|227508889|ref|ZP_03938938.1| hypothetical protein HMPREF0496_1052 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1052 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 305 1 305 305 612 100.0 1e-174 MTEEQSNSQQDIDKLGRIYWQDFFSNNGIIEPETLTAKQKDQFYNAFIRFLKVAFSKRAI PLREWTLEDIISAIRRCVSHAAEDSPVHGHSDESDEAWMAASKTGLLFAKWLVDRGTLDI ATHQLAMAYYHDVLGAGASIGRDEQKEKSVINYEQLAVADVSRQIDQWTFKFVLSSSWPD QDIQKSISGHYAQVLIRTVGVRIYYDTHLKLMDWTPSALENVLTGYFISRSILAPGEYWD FAEVLIAFLAFLIDEGQMTRRHGAPLVQIVVPATKKMLALARDQRNFAMSKRIELGLIVS GFYNE >gi|238617817|gb|GG669604.1| GENE 1017 1111828 - 1112160 139 110 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508891|ref|ZP_03938940.1| ## NR: gi|227508891|ref|ZP_03938940.1| hypothetical protein HMPREF0496_1054 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1054 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 110 1 110 110 210 100.0 2e-53 MIAFQAIRGVIFTESDEQSCHYHYACPYCGWIQEDVTLTKTESYKGNCKYPDCWIRFKVE IRKIHIKSPEQTHKEIHKIELQEIHKTEPQEKRQASFWGRVILFFKRIFA >gi|238617817|gb|GG669604.1| GENE 1018 1112480 - 1112875 316 131 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508892|ref|ZP_03938941.1| ## NR: gi|227508892|ref|ZP_03938941.1| hypothetical protein HMPREF0496_1055 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1055 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 131 1 131 131 248 100.0 9e-65 MNKKGLIGLVTLLSAVIGLACFGNIQRVSAQPLCWEEHYRHEYKVEVLKPIRINRVIYGK YTYQNKWVNGGRLHKGSIVRTWYAGIGGFDWHLTGGPNGRYDITSKYGYNVSWPSKHYFK ILKVYHGYHWF >gi|238617817|gb|GG669604.1| GENE 1019 1112890 - 1113402 345 170 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508893|ref|ZP_03938942.1| ## NR: gi|227508893|ref|ZP_03938942.1| hypothetical protein HMPREF0496_1056 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1056 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 170 1 170 170 308 100.0 1e-82 MIKKILLAFAAFLILMIGLAVVPGSASASYSQSTFPRWARGTWYSYTPHAKRIHYDKITI TAKHVYDHDYYGGRWHRYFNVITRRGFNGELLPKKSVYIASGHRFTAPIAKTTHTRSAMV PEYWHVKKIRVHNHYWKALLSSTGAGWDIGDTYAFRSRVWYQAKFMYTVF >gi|238617817|gb|GG669604.1| GENE 1020 1113663 - 1114292 319 209 aa, chain + ## HITS:1 COG:no KEGG:LPST_C0724 NR:ns ## KEGG: LPST_C0724 # Name: not_defined # Def: putative abortive infection protein AbiGI # Organism: L.plantarum_plantarum # Pathway: not_defined # 66 209 58 197 197 68 30.0 2e-10 MTKIENYFSKKQKRLDDLRKKLAQDNLLVATELSDSDLVLAKEMTKEKLLHSIDNRIFIT SEFPINDFLIRQLVLGKGIYYGNTALYLWNLSDTFPYTIHIAMPLGYRIPDSRYPDWTKN VHFKQVREPMLSNDVERLDVEGTTKTIQLYSQERLLVDLVKSRPTDQEQIKQSYRRYLHS KDRNFNQLLVVAKRLKVENKVRDIMELMI >gi|238617817|gb|GG669604.1| GENE 1021 1114361 - 1115137 336 258 aa, chain + ## HITS:1 COG:no KEGG:Apre_0680 NR:ns ## KEGG: Apre_0680 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 4 255 25 278 278 174 36.0 3e-42 MTILLRKYFIDGFLYLLSQSEYQKNFIWKGGFVLSAITGIQHRTTVDLDTMLQGVSLKTD ELTEIINEIIDGKRYDGVSYLLIDIQQIQEEKDYTGQRVRILATIDNLKDIFHLDIATGE TLVPNEIAFSYKPLLGNQKIPLLIYRPERILSEKLQTVLYRGILNTRMRDFYDIYVLNQT KQINFKILQVAFSYVIKNRHTSSEWENWQEIISLIRTDKHFQRNWQQYANKHSFVKDLSF DDVINTTESILENLSFSS >gi|238617817|gb|GG669604.1| GENE 1022 1115227 - 1116114 893 295 aa, chain - ## HITS:1 COG:lin2322 KEGG:ns NR:ns ## COG: lin2322 COG0760 # Protein_GI_number: 16801386 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Listeria innocua # 3 295 1 289 291 140 35.0 3e-33 MIMKKGFVILAGIGAGLILSACSNQSVATINGSNITKDAYYQEMKDSPSGQQALGQMILD KGLEKQYGNKVKNTAVTRQLNTVKKQYGASFGAFLTQNGLTASQYKRNLKEDLLLRAAIK ADTKFTPDMLKQQFKHYQPKVTVNQILVSKKATAQKVINQLNAGHSFAKLAAAYSTDTAT KKKSGRISPFDNTNTTLDPNFKKAAFKLKTGQYTKTPVKTQYGYEVIQMVNHPAKGTYQN HKEALKNQIVDTKAADNNTVHAVATKVLKRGKATVHDKQLQNVLAGFENQSSMKS >gi|238617817|gb|GG669604.1| GENE 1023 1116398 - 1116523 96 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDDLTVLLIFILMVIVAVILAVGFQVKLAPADYNTFDIVII >gi|238617817|gb|GG669604.1| GENE 1024 1116822 - 1117073 103 83 aa, chain - ## HITS:1 COG:no KEGG:LAR_1798 NR:ns ## KEGG: LAR_1798 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 11 83 6 78 108 62 43.0 8e-09 MIINPFDVAWMYVAFVQGKGGKRRSILVLEDSNNDLSFYPITHQHKRKSPHIQKQYCPIV NWNQIKGLTEPSYIDIVKIFVIS >gi|238617817|gb|GG669604.1| GENE 1025 1117063 - 1117365 306 100 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01998 NR:ns ## KEGG: LCRIS_01998 # Name: not_defined # Def: DNA-damage-inducible protein J # Organism: L.crispatus # Pathway: not_defined # 10 95 2 87 88 70 45.0 3e-11 MKDKAVEHDKNDKLIQVRIDKSVAAQAEDIFNRIGVTPTTAINAFYRKVISTGGIPFNLT ISQDDKDALEIRQLAKKIPVERLDTDEKIKKWFDDPRYDY >gi|238617817|gb|GG669604.1| GENE 1026 1117423 - 1118181 578 252 aa, chain - ## HITS:1 COG:SA2422 KEGG:ns NR:ns ## COG: SA2422 COG0627 # Protein_GI_number: 15928215 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Staphylococcus aureus N315 # 1 240 1 251 253 125 31.0 1e-28 MTLLNLTRAWPALQEQTTTHVILPNNIQSDHPLQVLWLFHGLGDSGNGWIRKTNLEVLTK YTNLAVITPEMGRSFYMNMANGLPYWDYLTKEVIPEMRKLLPLSANPKDNFVGGVSMGGF GALKLVFTHPNWFSAAIAISSVVDLSILPELMPDWRGIFNDPIPKHYLEKLASQAPQSSL KKIRFYDCIGDQDFLKADNDSFVTYMKTRLNLNVTYKTSPGDHDWLYWQSVLPDVLTWLL KARLDNGRSVLN >gi|238617817|gb|GG669604.1| GENE 1027 1118467 - 1119243 1056 258 aa, chain + ## HITS:1 COG:Cgl2619 KEGG:ns NR:ns ## COG: Cgl2619 COG1028 # Protein_GI_number: 19553869 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Corynebacterium glutamicum # 4 257 3 257 258 200 47.0 3e-51 MAEKVAVVTGSAGGLGKGIAERLANDGFAIVLHDINKDLLAETEKEFKDKGIEVTSFAGD VSKRDDQFALVKHAVDTFGRLDVFVNNAGIEAVTPFLEIDEKELERVFSINVFGMVYGTQ AAATQFIKQGGGGKIISASSIAGHESYAMLGTYSATKHGVRSFTQTASKELAKYKINVNA YAPGVAKTKMWDRIDAEMVKHDPSLKPGEAFAKYSAEISLGRYEVPSDVAKLVSFLASPD SDYITGQTILVDGGMVYR >gi|238617817|gb|GG669604.1| GENE 1028 1119313 - 1119561 301 82 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508903|ref|ZP_03938952.1| ## NR: gi|227508903|ref|ZP_03938952.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 82 1 82 82 114 100.0 3e-24 MKIDQLIAKERRNAEFNREYELEGEKLQIAVALYKARENAGLTQAQLAERAQTTQAIIAK IERGDNVSIDKLSSITHALAKK >gi|238617817|gb|GG669604.1| GENE 1029 1119629 - 1119895 387 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508904|ref|ZP_03938953.1| ## NR: gi|227508904|ref|ZP_03938953.1| hypothetical protein HMPREF0496_1067 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1067 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 88 15 102 102 137 100.0 2e-31 MANKVTHDKTYSTKVSQEVGNKAEAYLAQYDISVSDYLSDALTKAANHEVKIINYLDTPE ALEAKREAEAGEGKTYDSLEELWKDLND >gi|238617817|gb|GG669604.1| GENE 1030 1120208 - 1121041 586 277 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508905|ref|ZP_03938954.1| ## NR: gi|227508905|ref|ZP_03938954.1| hypothetical protein HMPREF0496_1068 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1068 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 277 1 277 277 516 100.0 1e-145 MFKKLCIGMITGVALLVGLATPTHASTDLGKTPHLFYVKVKKPIFTGQYKIVKGHHQRLL TPKGTVLRVVKIKKAENGQRSEAALTWGLISHKLRQKVYDPRSASYAVKQFNTTYFEPYK LKLPISEYMFQAGSFSNTQESYYKPIFNITMDGYLQYFSSSRLKHYHIQTTWLYGKTPAN GRQNPIYTIKPSKTVKIAKSTSKDKQFRLYYRQPISGLTEKKTHGYYRLTINELGDKSQT WKSNGHTYAAMWRTYKVGSHPFYYLWGSETDDPQYLK >gi|238617817|gb|GG669604.1| GENE 1031 1123815 - 1124732 451 305 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508907|ref|ZP_03938956.1| ## NR: gi|227508907|ref|ZP_03938956.1| hypothetical protein HMPREF0496_1070 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1070 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 305 1 305 305 562 100.0 1e-158 MRVSKLLLTGVAFLGFVSFNIGQVYASNYFPVRHYHSYTPRSWRGTYHTSDGDMMKVNTY SVSLNGKTFYRSNWHGWRKLAFAKVDSSHYTFNVLAKYGYQSSRRWHLKYKNGKKELINN LEMGYSQVWYKSVHHTKKVKSKKTQVYGLDYHSAPESLKSCVGHMVYTGDWVDSSDPVGL TTTMDNYDNNIFAVKLETGGVPLILSGFKHDGIQKMALVQYNGQTYYAYADTGNDLVPYN TYTQSLSGDTFVISSVKPTDTKDVALKSSDQVLTNNIWDYTNPNTGNEIYYHYSLNKDKW YQDND >gi|238617817|gb|GG669604.1| GENE 1032 1124791 - 1125294 296 167 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508908|ref|ZP_03938957.1| ## NR: gi|227508908|ref|ZP_03938957.1| hypothetical protein HMPREF0496_1071 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1071 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 167 1 167 167 311 100.0 8e-84 MLPKSFFISGFSINGESLSDYVPLEITKEKPYIELNGLLTSYYKGEMLNGREIIPRLLIQ LSLVISDNPKNFVEDIKEIPTHIQSLDVKSAALSAYPSLKKPALFTVRLNPFREPSLNFK SLSYGNYYFQIAIFIDTKRTVEAESLLVANVPGKFKYFGNDGDKNDE >gi|238617817|gb|GG669604.1| GENE 1033 1125287 - 1125727 299 146 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508909|ref|ZP_03938958.1| ## NR: gi|227508909|ref|ZP_03938958.1| hypothetical protein HMPREF0496_1072 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1072 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 146 7 152 152 230 100.0 2e-59 MNNNEKARVIPMPSKNFEDDYLNTPSLPKNRGLDYNGGDDGGGGNMDDHVTHRELDNAVE SLQKDIKLAQTETAKQIIGLSGKIDTIQANLIGKIDNGNSDLSGKINALATSIGSLSKIT WWIMGVISASIVIPLIGFLIKVIFKL >gi|238617817|gb|GG669604.1| GENE 1034 1125794 - 1126033 151 79 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508910|ref|ZP_03938959.1| ## NR: gi|227508910|ref|ZP_03938959.1| hypothetical protein HMPREF0496_1073 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1073 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 79 1 79 79 129 100.0 8e-29 MNEEERFEKMLQDKDYKYFDSLLKKALTNHDDHFSFSTQHFDNHQEAQSTLCQWADQHQE VNGFEIGPVDITVHLHTTV >gi|238617817|gb|GG669604.1| GENE 1035 1126030 - 1126224 76 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508911|ref|ZP_03938960.1| ## NR: gi|227508911|ref|ZP_03938960.1| hypothetical protein HMPREF0496_1074 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1074 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 64 1 64 64 121 100.0 1e-26 MKLSKASVHTLKHCITIFDQEIGISVFAEIYYVNYERVHSVSKRAISKCVLPVNKGNYGK PQGI >gi|238617817|gb|GG669604.1| GENE 1036 1126365 - 1126667 180 100 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508912|ref|ZP_03938961.1| ## NR: gi|227508912|ref|ZP_03938961.1| hypothetical protein HMPREF0496_1075 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1075 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 100 1 100 100 154 100.0 2e-36 MAIIIISTLLFFLFGLSRFVTSWWWLILLMFVAIVGMDFLNYIMSGTGIDIIIVGFGIAV YMYLIKPKLFHYQIRSHFSQFKSLYDNVKSRFIKIDSKGD >gi|238617817|gb|GG669604.1| GENE 1037 1127139 - 1127495 223 118 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508913|ref|ZP_03938962.1| ## NR: gi|227508913|ref|ZP_03938962.1| hypothetical protein HMPREF0496_1076 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1076 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 118 17 134 134 201 100.0 1e-50 MNIKKTAIVLLASTSLGISIGSTINQNTAQAFSWHSSAIPTKLQGYWYATANHHQGVGIY RHYIRYSGEKAAHITKWRYAGNHFYKFHYTHSGGFTILLHYFGPHKITMDSFWHSYFR >gi|238617817|gb|GG669604.1| GENE 1038 1127748 - 1127870 137 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRLFKSKHVTVYMRKATAKQNIIGVASIIILGLIIWAIVR >gi|238617817|gb|GG669604.1| GENE 1039 1127875 - 1128051 133 58 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508915|ref|ZP_03938964.1| ## NR: gi|227508915|ref|ZP_03938964.1| hypothetical protein HMPREF0496_1078 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1078 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 58 1 58 58 71 100.0 2e-11 MVLSEAQKRASKKYKAKHRDRVRYLNKRSAAKMFITTDGTIEDVKTLQKLIEKRLKEG >gi|238617817|gb|GG669604.1| GENE 1040 1128435 - 1129118 698 227 aa, chain - ## HITS:1 COG:Cgl2780 KEGG:ns NR:ns ## COG: Cgl2780 COG2085 # Protein_GI_number: 19554030 # Func_class: R General function prediction only # Function: Predicted dinucleotide-binding enzymes # Organism: Corynebacterium glutamicum # 6 202 7 198 208 155 40.0 8e-38 MTEIKTVGILGAGKVGIVLAQLALAAGYNVRISGSGSVQKIALTIETLVPGAIASTNQGV VSKSDLIILAIPLSRYKNIHAKLLKGKLVIDAMNYWWETDGIREEVLDPSSTSSEQVQKY FSKSTIVKTFNHMGYHNLQEEAKPAGAENRKALFVTGDNPEAVDQIARFVDTMGFDTVVH YHLADGIMTEPGSPLFGASLTRSDLKNVIDHFDETEFGKKIKSNQEA >gi|238617817|gb|GG669604.1| GENE 1041 1129118 - 1130170 665 350 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900201|ref|NP_344805.1| hypothetical protein SP_0267 [Streptococcus pneumoniae TIGR4] # 7 341 2 341 349 260 41 1e-67 MVNVNNLQFGIETFGDIVAAEDGHLLTAGQSILQIVKEGELADKLGIDVIGVGEHHRPDY SVSSPEVVLGAIASVTKNIKLATAVTVLSSDNPVRVYERFATLEGLSQGRAQVMLGRGSF TESFPLFGYDLIDYDDLFNEKLDMFTQLLKEKPITWDGKYTQSLKDQDVYPKTDYDGLET YIGIGGSPESIIRAAKNGYRVILAIIGGQADRFAPYLDLYKKAAAQYNKPVYPVAVHSHG FIADDEDEAVEVAWKNIKANFDRIGLTRGWAPMSREQFDGETKSGSFYVGNPEHVAQRIA RTIKLLNLGRFDLVYGAGNQTAAQRERMIELYATKVIPRVKELLSQEVTA >gi|238617817|gb|GG669604.1| GENE 1042 1131025 - 1132128 504 367 aa, chain + ## HITS:1 COG:pli0029 KEGG:ns NR:ns ## COG: pli0029 COG2189 # Protein_GI_number: 18450312 # Func_class: L Replication, recombination and repair # Function: Adenine specific DNA methylase Mod # Organism: Listeria innocua # 4 218 42 271 355 135 39.0 2e-31 MPILNWNGKSKVINYHFNVPYHILDLQYTFGANNKSKSMIIHADNLIALKSLLPQYEGKV DCIYIDPPYNTGNEKWVYNDNVNDPKFRKWLGQVVGKEGEDLSRHDKWLCMMYPRLKLLA RLLSSNGVIFISIDDNEFSNLKAICDEIFGHDNALGPIIQDKGNAKNDTHNVQKNHEYII AYRKKIDAGQDGHVLFSDRKVRRHILKDIQDRYFYLSDPITTRGEGGTLRARKNLGYSFY LNPDTQEFIPVMDYDQELALTANDEAVVYKNDSNLKDQGYTVIIRPPRVRGQLGAWTWDI NKAKQHIEDLYLKPNRKGSYSVCFKHYVPSNEVFEEDGCSLNQLIKALYLVLLDIIHPKE QKNLSVF >gi|238617817|gb|GG669604.1| GENE 1043 1132305 - 1132934 294 209 aa, chain + ## HITS:1 COG:no KEGG:Acfer_1215 NR:ns ## KEGG: Acfer_1215 # Name: not_defined # Def: site-specific DNA-methyltransferase (adenine-specific) (EC:2.1.1.72) # Organism: A.fermentans # Pathway: not_defined # 1 209 435 640 640 154 38.0 2e-36 MEDYAESVTAERVKKVIKGYTTHYRKVVQLYAKRLNLSNLRKGSQILDNAHEVMENNQSR FDKVQCKLNDNSIVVQGIKQKGQQVAGVGGGFSYYTIGDTLLDEYGNFNVDVPTSTVASY IWYSETRNSASVINKHFDESGYLGRVSDTAYYLLYDPTRITVLNESFLTHIKYHADMYVI YADRLTISKDRLSALHITFKKIPRDVERF >gi|238617817|gb|GG669604.1| GENE 1044 1132948 - 1135572 1023 874 aa, chain + ## HITS:1 COG:no KEGG:EUBREC_1323 NR:ns ## KEGG: EUBREC_1323 # Name: not_defined # Def: putative type III restriction enzyme # Organism: E.rectale # Pathway: not_defined # 1 854 1 865 887 643 42.0 0 MELKEYQKGVLDDISRFLEEWSGPSDYNASTAYSHFWQIKGLKVADDGPINPYNDQIDNE KVPQLCVKIPTGGGKTFVAASALKLLSDYLPYTDKKAVVWLVPSDSILKQTFKALSDPTH PYRKRIDADFSHRVEIYGKDELLGGQNFTNSSIEHQLSIFVLSFNSLRTSNKDSRLVYQE NGNLLSFKSSLTNQNVLDDADELSLIQVIRSLDPIVIVDESHHATSKLSIDMLKNINPTF ILELTATPRQSSNVLSFVDSYSLKKEHMVKLPVIVYNRNDKSEVIGTAIAIRNKLESLAN KIKKKRYIRPIVLFQAEPQNKDGAVTFNRIKKDLIKVGIPSEQIAIKTANVDDIGDTDLM NPECPIRYIITVNALKEGWDCPFAYILATIANKSSKVDVEQILGRVLRLPYASESSEELL NLSYVLTSSDDFANALDGIVKGLNQAGFSPEDYRAIDNISQYPSIDSPVPFKNDTNSTPF QTKSVSKELQIEEINSDTVKAWLPHNPNKEVNRETKTDRLLNQAKKMNTVYKKETYNRLN QSSDGFVPYDLSKRVPKITIQPQYIEDASNTVLPQFTIPGEKTIFSDTSSRLLTFSDLTI NFDLSKSDLNINLTETLPEMAKIDVNSQNKVKQGRITGNFSGIEKIIYDKAPLRQAIEIA IHRADSINFVDHRSVCSYVNRVVNSLSASQKETIIKKPLFFAEKVKAKIFDLINKEEQKE FNERLEIDSISVEPTYHFPNEMLLTNSIDSLEKTLYSAEQRGNGFERKMMDMLSESKNIL WWHRNPARSKYGFCMNGPFNHWPDFIAKTLTGKVLIIETKGDDLRDNGIERARLGSQWQS LAGIHDFRYFLVFQHLQEKETVNFTKFKDILSKL >gi|238617817|gb|GG669604.1| GENE 1045 1135712 - 1135924 138 70 aa, chain - ## HITS:1 COG:SPy0131 KEGG:ns NR:ns ## COG: SPy0131 COG3436 # Protein_GI_number: 15674346 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 1 69 373 441 450 82 56.0 2e-16 MKNIVIGRKNWLFSTSPQRARANAIWMTLIESAKACGLDPQKYLQTLLTELPQLPVFAKK EVLEAYLPWN >gi|238617817|gb|GG669604.1| GENE 1046 1136086 - 1136625 299 179 aa, chain - ## HITS:1 COG:SPy0131 KEGG:ns NR:ns ## COG: SPy0131 COG3436 # Protein_GI_number: 15674346 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 3 136 144 273 450 77 32.0 2e-14 MRDWHRLGSNAQDTTFNNWVIQGTVPVESLYRLIHEHLTGQYYLQGDETPHSVLREPGKK ATSKSYMWVARSVKRSDEPIVFYAYSDSRSGKFAQRLYANFTRTLQCDGYAGYNLLGTQV VRVGCWSHVRRKFYDAAQGNRNNGNECSVETVGRNVCVGTSMAELFSSRAVTPSLGQIK >gi|238617817|gb|GG669604.1| GENE 1047 1137159 - 1140131 899 990 aa, chain - ## HITS:1 COG:no KEGG:EAT1b_2598 NR:ns ## KEGG: EAT1b_2598 # Name: not_defined # Def: hypothetical protein # Organism: Exiguobacterium_AT1b # Pathway: not_defined # 5 216 6 210 991 133 40.0 5e-29 MESKLSTILSQLIKASDDSKLIIFVGAGVSQNSGLPSWSKLVNAMAKALNIQSSHEFTND ELLKIPEMMFQKDRNKYFNIIRKTMQKQSSGNTLDDMIVRLSPDHIITTNYDTLLERSAS LNARIFQYVTIFDDSSFLLRGNSGSHFILKMHGDITQKNLEKTIVLKESDYLNYDHSHIL ISTFIKALLATHTFIFVGYSMSDNNLRLIINWINHLRRQLTYNNTQTHIPNNVLLYSSSR SQNYSYTQLQNYYKASNIDLIDLDTLPPEVMRYDNENSLTDKTAKSDYAILNAIAHWFPY FNNNYLEMLDQLPYTSFEDFRPVITHDIELSSNGKFTDSSLNYYGSTVIMSQNSFKRIKD IQKNTPLVDSILSKSSIAKIVVLNSNLSKYHLISVPREKSNTVFSLTKSNQFYKLFEQAS SRLTSSSIESQFQYAYINYLFFPKKSIKILSNISIDGTKNYLYSLIKKLNLAFTDTEINP IGIISKIFNEQTPLQQLQSHTLREIFLGDTESFYANNVSLRKLIDEQKRFYTRDFFSANL IDALGNSIKKYGRLIETQFFVYDMYNYIHKNYLFVDFFYTSWNSIFNAYCSMIITTYVSG KNKINPKINTQRNYPLNSVDVDIIVKLTSTDFLKGQLENQHIYDLIYNNEKEFCQNFVNL CDSYKRIDKRLHLFNKKRIHPARNKFEKWVENYLLLIRYSKLSSSSLTRCLKAVFSLTEQ VKVDLVILEKISKIIVDYSFKVKDQPITDLEVFLIRYLSNPTNFSRLNTPLGNLSGLSFW TERVLSCNKLDKQLIRKNIVSNSHPDYMIFFISSFKKEEFPRRNAYKVINYCLKWHPQLP IQLFENGYLLQSREYYFHHLIKQVDKHRVPKGRIQIGGLENQLIDSLLLFLTTNYRYRRK TLISILNISPLFQFVYSPKDFNYDLIDVTNERWQILLIGTLKDGKNRFTKYFRKGLTKEQ IIPIQKQFIARNNNINLTRTFSFLEQILSR >gi|238617817|gb|GG669604.1| GENE 1048 1140679 - 1141464 686 261 aa, chain - ## HITS:1 COG:SA0343 KEGG:ns NR:ns ## COG: SA0343 COG1878 # Protein_GI_number: 15926056 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Staphylococcus aureus N315 # 28 260 13 247 250 250 55.0 2e-66 MTTTTTANTKFTSKISKPQSVGEVVEKLKSFNWVDLTHSFGPESPRFPSFARPEFKTIFT HSDGFYVKQYTFPGQFGTHIDPPIHFDEHQDKYVENFSLKELVLPLVVIDHSDAAKKNPD ASLSVNDIKEWEKEHGKIPENSFVALRTDWSKRWPSQEKFENLDDKKQAHYPGWDLDALK FIYEQRGASANGHETFDTDTAVKQEHGLVGEYYVLSHGHYQVELLDNLDLVPATGAYIFI SVPKAEKAPGFPVRAFAVVPK >gi|238617817|gb|GG669604.1| GENE 1049 1141478 - 1142824 1327 448 aa, chain - ## HITS:1 COG:PA5510 KEGG:ns NR:ns ## COG: PA5510 COG0531 # Protein_GI_number: 15600703 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Pseudomonas aeruginosa # 11 428 12 431 449 281 38.0 2e-75 MAENASVEGGLKVSLSTKDLLVYGITFMIPVAPLAFYGSFLTPANGMVALAYFVGMVAML FTGFSYATMSSRYPFSGSVYTYVQQGTNAGLGFIGGWGITLDYFLIPTITYLISQSFGES LFPAVPSWAWIVILVLFNTIVNILGANVVTKISWVLFALQGVVLVAFIIGTIRLLLSGTI QPQAISFYNPQHFNMQGVLQATGIVIVSYLGFDAISTLSEEAEDPHRSVGRAIILSILSI GILFVVITVLAGFVAPDYQNLNPNTAFLGILQRVGGTWLVKLADITIILSFGFASGQEGQ TAVSRILYAMGRDGILPSAFAKLHKKYRTPIFAIVLVGLASLILSLTLSQDTVSNLVSFG ALFGFILLNLSVIWKFYVKGDHSSVSSFIKYLVSPFIGFAVSTWIFLSLSIESKIVGIIW ILVGLAILVAKTHFFSEKTPSLDFSNKD >gi|238617817|gb|GG669604.1| GENE 1050 1143412 - 1143696 74 94 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFYTVKGRKLSCYHPKFVTHLHELPQRHLLMPGIVTDPSVIDASTSIIIQSSSSQLSFLP PFTTWQFSLEERLIATLLFITCCIKIVINNNIIF >gi|238617817|gb|GG669604.1| GENE 1051 1143789 - 1144295 285 168 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 [Streptococcus pneumoniae R6] # 3 147 6 150 165 114 41 1e-23 MTKKQDYQLLLKQAQTLLDGEKDIVANMSNLVSLIFHSLTDLNGTTFYRNINHELVLGPF QGKPACMHIPFGKGVCGTVAQTKRSEIVPDVTKFDGHIACDAASKSEIVVPAFYHRAFWG VLDLDSPHLNRFDSIDEHFLLQIAPLIFADNDEPITDRQIVGNHLEAR >gi|238617817|gb|GG669604.1| GENE 1052 1144301 - 1145467 801 388 aa, chain + ## HITS:1 COG:lin0314 KEGG:ns NR:ns ## COG: lin0314 COG0436 # Protein_GI_number: 16799391 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Listeria innocua # 4 384 2 384 393 373 45.0 1e-103 MNFKPSDRLNEIPTSFFAELDDKIANFKTNTPMIDLSKGNPDLPTPQNIVNALKKAADDP INDAYTPFEGKASLQQAISDFYEREYHVEIDPTTEVEIFNGAAVGIYALPQVILNPNDIA LVPDPYYPEYIPAIQLAGGHIYHCPLLAQNHYLPDYPSIPTEISDKAKLLFLNYPNNPTG AIATQTFFEKTVAFAKQHHLIAVNDFAYASLGFDSHPLSLLQIPGAKETAVEIYTLSKTY SMAGWRIGFAVGNADVIASLKKYHAHVYSTVYGAVQDAAIEALSGSQDGATKIRQAYRQR RDLFVSGLRKLQFDVQPAAGTFFVWVRAPQQLTGQQFADQLLKQAGIAVAPGIGFGKEGQ QYVRFSLVHSDKTLKAVLSRLQKMEGSI >gi|238617817|gb|GG669604.1| GENE 1053 1145464 - 1146564 737 366 aa, chain + ## HITS:1 COG:lin1848 KEGG:ns NR:ns ## COG: lin1848 COG0371 # Protein_GI_number: 16800915 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Listeria innocua # 2 358 6 358 368 258 37.0 1e-68 MIISRIGPQQYVVSSEAYDQLPKYLSNNQLTRILLLHGQRSLNAAKPYLPELPKDSHIYN VNFNGECSINEINRIRTPIKQYDIQVVIGLGGGKVLDTAKSASHYERVQLVLIPTLASNC APWSSVSVHYKENGERLDHEVYDTAANLLLVNPVVILNSPVNYLIAGIADTLAKYYESEL VFQHLAESDHFDSTLQISFQMAVDCRDILLKSSIAAVKDMKAGQLTTEWLNVVETIIATA GTVGGWGDQYGRATGAHSVHDALTLFKETQPLLHGEKVAYGILVQLALEAHVDDLRRLIQ LFKKLNLPTNLKELGFQQITTSLIHQIAAESSSPDKTIHLLPLATDEQAVFNAIQKLEHV THKLSV >gi|238617817|gb|GG669604.1| GENE 1054 1146581 - 1147636 760 351 aa, chain + ## HITS:1 COG:BH3481 KEGG:ns NR:ns ## COG: BH3481 COG1135 # Protein_GI_number: 15616043 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Bacillus halodurans # 6 345 1 335 338 313 49.0 4e-85 MTNNALIKFDHVEKTFPKKNGVSQKVLNDVSLSINEGSIFGIIGYSGAGKSTLIRCVNGI EKPTRGNVFFQDQVINQLKAGELRDARQKIGMIFQQFNLMPSRTVFQNIYLPIKYQHQKK EEAAKRVDKLLDLVGLPDKANAFPSELSGGQQQRVAIARALIDNPKVLLCDEATSALDPQ TTQDILDLLRRLNRELGITLIVVTHEMDVIEQICDDVAVLDHGQIVESGDVYSIFADPKD DLTKRFIDTTSRLDLSDEIIHSHLINLSGSQRLVKITYLNGKAMQPLISYISRTFEVDAN IVVGDIKILQSKPIGGLAFVLDGKPEQIEHALSYLKDQDIRVEVLDYVKSD >gi|238617817|gb|GG669604.1| GENE 1055 1147620 - 1148300 612 226 aa, chain + ## HITS:1 COG:L122401 KEGG:ns NR:ns ## COG: L122401 COG2011 # Protein_GI_number: 15672305 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Lactococcus lactis # 1 225 1 229 231 145 40.0 4e-35 MLSLISHWFPNVSANSGIFWTAVIQTLEMTIIVGVVSFVISLFLAICLVATKKGGLLEQP ATWTILDKIVNLFRSIPFIILIAALIPLTRIISGTAIGVQGTIFPLIVGITPFFTRQIES ALNEVDSGLIEVGEVIGLTPWQIIRSIYLKEGIPNIIRVTTITIISLIGLTAIVGVVGGG GIGDYAIQYGYQQNELDATYACIIILVIIVSIIQAIGTLLSRKLTR >gi|238617817|gb|GG669604.1| GENE 1056 1148320 - 1149171 883 283 aa, chain + ## HITS:1 COG:L120334 KEGG:ns NR:ns ## COG: L120334 COG1464 # Protein_GI_number: 15672303 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Lactococcus lactis # 29 273 32 273 286 154 38.0 1e-37 MKKGNRFIKVVLLLALLISIPAFLSACGNKNASGKQVVKVGVVGTSDAPIWKQVNQNLKK QGSKVRVKLVSFTDGVPANQAQANKDIDLTAFQHYAFLHQEEKEKHYKFKVVGQTYLVPL NVFSSKIKSLSQIKNGDKIAIPNNVTNAGRALKVLETAGLIKLDPSKGNTPAIQDITQNK HHLKIIQVDPSKIMNLLPDFTAGITNSNFVLAAKKDPIKDAIYRVSPKYSDPKNKPWINV IVARKDEANKAAYKQIVKAYHTASVAKELEKLYSGVYTPAFKY >gi|238617817|gb|GG669604.1| GENE 1057 1149545 - 1150585 731 346 aa, chain + ## HITS:1 COG:ECs3058 KEGG:ns NR:ns ## COG: ECs3058 COG0524 # Protein_GI_number: 15832312 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli O157:H7 # 42 334 5 299 313 123 29.0 6e-28 MISQLELAKLAGISRSGIAAHISNLMKKGYLRGKGYIVSPIEHVTVIGGINTDIYGIASR EFMAKTSTPGHVFHAIGGLGRNISLNLRKLGVFNYFISVYGDDLGGEQFKIDATNNDMDI TYSKQLMNRKTSSYIYLNQPTGERFVGLDDMGINEMITPEFLKPREDVIQGSTEVVVDTN LPENTIRWICQNFNGPVFAKAVSLSKTERLRSNLHLIDTLVINGIEAPILSGIQPTDKQT AIDCSTKLLRLGVKNVFLYIDSVGMLYQNKDAIQYFPQPSIELTNTNGAGAAATAALVFA RQKHKSFKEAAELANAAAYLTSESKSAVNEQLSINALTEQKKRLFY >gi|238617817|gb|GG669604.1| GENE 1058 1150764 - 1151717 735 317 aa, chain + ## HITS:1 COG:ECs3058 KEGG:ns NR:ns ## COG: ECs3058 COG0524 # Protein_GI_number: 15832312 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli O157:H7 # 9 312 4 308 313 181 34.0 2e-45 MGSPEYESKDYVVVIGGMNMDIFGMPNEKVIDRDSNPGVVGMTVGGVGQNIAQNLAHLDV PTYLITVYGNDYNGQVLKESCRQNKILLDYAAEIENQRSSTYMYITDETGDMLVGVNDME ICKQISPSFLKKRLDFINNAKLCLVDANLAKETIDWIGQNVEVPLFGDTVSCAKARHLEG ILDKMTTLKPNALEASLLTGIEIRDEETAKEAAQALLDRGVQNVYISLGAKGILCANQWK KLVIHPFTTKIVNANGAGDCGMAAITWSFFDNPNRQLGEVGRIAQAASSIALESSKSVPN ITVDKVMAKLESMTVAI >gi|238617817|gb|GG669604.1| GENE 1059 1151747 - 1152439 783 230 aa, chain + ## HITS:1 COG:MA2988 KEGG:ns NR:ns ## COG: MA2988 COG0135 # Protein_GI_number: 20091806 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylanthranilate isomerase # Organism: Methanosarcina acetivorans str.C2A # 57 219 88 252 261 75 28.0 7e-14 MIKQIYSLIQYDESVKTMEAGANNIGLVPMQNGGVPAHRVPLDRVHKIFNEAKKRGVNSV AIMLTNDPEEMLQLAEEIQPDILHIAGDGYAATPAFAKRLKEVAPDTDLMQAVLIDNESA IDRAKHFAPFVDYLLLDSGLAPDTGIGASGQTHDWNIDAQIVKEVDIPVIEAGGLGPDNV ADAIKKIKPYGVDSLTKTSIKYEGGNMEKDIDKVRLFCQRADEAAKEIGL >gi|238617817|gb|GG669604.1| GENE 1060 1152446 - 1153108 520 220 aa, chain + ## HITS:1 COG:no KEGG:Cphy_0727 NR:ns ## KEGG: Cphy_0727 # Name: not_defined # Def: hypothetical protein # Organism: C.phytofermentans # Pathway: not_defined # 15 207 8 200 208 173 46.0 6e-42 MIRSEVVKNRLSFKKISLAMVGIFLVCVGVAFNNNTGLGNDPVGIIYDGLRVAFQIPMIK LGLVSNLLNIGLIVILFIFGRHYVNIGTVMYLLPYGLFITIGSHLYPYLFNNASMITRCF GGLTGISLYYIGISLFVAADIGVDPFNGFMLTIRDRTGWSIRRSKMTFDICLMTTGFLLG GKFGAITILTALTTGPTIQILGEWIQKHIFIEGKKQIDKR >gi|238617817|gb|GG669604.1| GENE 1061 1153095 - 1154255 1012 386 aa, chain + ## HITS:1 COG:SP2157 KEGG:ns NR:ns ## COG: SP2157 COG1454 # Protein_GI_number: 15901967 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Streptococcus pneumoniae TIGR4 # 26 383 24 382 383 193 31.0 4e-49 MINVKLLQKVKIVNTDHLDQTILEILEERQYKRPLVVLDRFLLNVQIIKDTLNKLKNNDI DFAIFDGIVPDPPTEVVDSGVKAFKAHQADCMIAIGGGSSIDVARGINIVRINGGSISDY ATSHKTIDPCPGLIAVPTTSGTGSEVSNALVITDKDSQKKLAILSDNAVSEYAVLNPDLV LTLPKDMTIATGLDAFSHAAEGYLSTLASPMTDAICEKVMFLLYHFLPRAVANGQDREAR QRVMVAATLAGWMLNNAGTNIGHSSAHILGSKYHIVHGEAVAYALPGVLKLVGSTLPHKV REIGQILGVTYPEGAPESQTTEFAINAYKEFRDQILGLHPFTDYHIDQREITSNAQDVLH ERFAGNTPVNLNLKNVQAFLDEFGRQ >gi|238617817|gb|GG669604.1| GENE 1062 1154286 - 1155470 1014 394 aa, chain + ## HITS:1 COG:SA0302 KEGG:ns NR:ns ## COG: SA0302 COG1972 # Protein_GI_number: 15926015 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside permease # Organism: Staphylococcus aureus N315 # 1 392 1 404 406 330 49.0 4e-90 MNFVFLLTGLALVFGIGWLISSDRKHIRFFSIAKLFALQIIISFICLHTSGGINALKGIS SFFSWLMQQASGGVDFVFGGLMIKPGGSVFFLTVLMPIVFISALVGILNYIKVLPFIIKW TGWALNKVSGMGELESYFAVSTAILGQPEVFLTVKDQIPKLTEQRLYTICASAMSAVSAA MLASYMKMVPGKFVVVAVFLNILSALIISCIVNPYIPEKEDKLVEVTKGNDEPFFQVLGN YIVDGFQLAITVGAMLIGFVALVTFLNNTFLAVIHISFTDLIGYVFAPIAYLMGVPTHDV LKVGSLMATKLITNEFVAMGTLHGVAATLSVKANAIISAYLVSFANFGTIGIVSGSIKSI SAEQGGYVAKFSMKLLLGATLASVLTGTIVGVYF >gi|238617817|gb|GG669604.1| GENE 1063 1155501 - 1155890 270 129 aa, chain + ## HITS:1 COG:no KEGG:OEOE_0821 NR:ns ## KEGG: OEOE_0821 # Name: not_defined # Def: hypothetical protein # Organism: O.oeni # Pathway: not_defined # 11 119 1 109 123 95 52.0 5e-19 MKGYKQRLISLVLLALTLFVFSNSFTFILQNHQTDLSTVLRSAAFVVVLYLWALVRLFGL KRFAVPFIDFVNVVYGMGFISNIAMTVTTISGIKAWLIIVMSLSGILVNIWVSKTARKFN GSFKSAVNN >gi|238617817|gb|GG669604.1| GENE 1064 1155908 - 1156840 885 310 aa, chain + ## HITS:1 COG:ybeK KEGG:ns NR:ns ## COG: ybeK COG1957 # Protein_GI_number: 16128634 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Escherichia coli K12 # 4 309 5 310 311 369 58.0 1e-102 MTKIILDCDPGHDDALAMMMAIASPKIDLAAVTTSAGNQTPDKTLNNAMRMLTLMKHEEI PVAGGNHTPLVKPLETAGNVHGKSGLDGAELPDPDFKPQNMTAIELMAKTIQESNEKVTL VVTGPMTNAAIFLRVYPELTNKIERIVFMGGAMGLGNWTPSVEFNIFVDPEAAKIVLNAG IPLTMAPLNVTHKAQILKDEIKKVDEINNPVAHAFYGLLNFFEIYHEAPKWGFKGAPLHD PCTLAWLIDPSMFESKLMNVDVETQGELTTGETVCDYYELTGKPQNTDVLLGIDRPKFIK LIMDSLRTFD >gi|238617817|gb|GG669604.1| GENE 1065 1157069 - 1157512 357 147 aa, chain + ## HITS:1 COG:RSp1317 KEGG:ns NR:ns ## COG: RSp1317 COG1522 # Protein_GI_number: 17549536 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Ralstonia solanacearum # 2 137 9 144 164 92 31.0 2e-19 MIDENDEKILNLIQTDGRLSVKRIAQALSLSGPAVSQRLTNLKNKGIIKGYRAEIDMNKL ELSVRAFVQVDVSPNQKNQFYSFIKQIPNILECNVVTGPYAMLLKVAYKVPEELDDLVNK LQRFGKTNTMMVFSTPVRPRGFFFEIH >gi|238617817|gb|GG669604.1| GENE 1066 1157701 - 1158501 477 266 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508943|ref|ZP_03938992.1| ## NR: gi|227508943|ref|ZP_03938992.1| hypothetical protein HMPREF0496_1106 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1106 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 266 12 277 277 504 100.0 1e-141 MMASMALGLSLPLSIHAATDLGTNYHTKCVEVKRPIFIGEYTKVNGHRGHRILTPKGTIL FTFINKKAKNGRPSRVTLIPGILSYHKKQHVSWSLSYQTTHFNTTYFKLYKLKLPIRTDQ LQAGRFTLSNAKDYQPIFNITMDGYLQYYRSSKLKHYHIQSAWEYNQVMGDRNPLFTIKP SVSRKVQKFVVKKNNYYLYFHHPVDGLRMKKSHHGYRLTVKNLGKRHKVFYEKSYFYLFK WTDFQVGKQPFYYQWLFGSNDPSYFK >gi|238617817|gb|GG669604.1| GENE 1067 1158543 - 1159091 187 182 aa, chain + ## HITS:1 COG:no KEGG:lp_3019 NR:ns ## KEGG: lp_3019 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum # Pathway: not_defined # 31 178 24 170 174 116 41.0 5e-25 MKKGLSFGALMVIILGVIFFSLTNVNNHHSHQTQNSQRIAKKISSQKKTVTPLSRDELKQ NRKLMFCSIIYFAVKHVKIQRWQEVSDFSLGWQIESHHTDRGTHYLVWPDKNITTNEKNL EPNWFEIKKDGRIIYHSFVVHSFHKNLTEATTKTKLIKQLNADKAGDKVRKMVNNLTMTH DN >gi|238617817|gb|GG669604.1| GENE 1068 1159275 - 1159685 257 136 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508945|ref|ZP_03938994.1| ## NR: gi|227508945|ref|ZP_03938994.1| hypothetical protein HMPREF0496_1108 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1108 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 136 1 136 136 241 100.0 2e-62 MKRSKVLLASVIGLLFGIAIFFALSASETSQAQSVYQRIPVSYHGTWRQSRQRYPNGSWH KKSGAKLVVGSRFVKSEAGHFSGHSMGVYKTKGSVTVFPIKNGHRAGETFQMKPTTYKGH KALIVTYNVAKQVYVK >gi|238617817|gb|GG669604.1| GENE 1069 1160104 - 1160751 620 215 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4665 NR:ns ## KEGG: Pjdr2_4665 # Name: not_defined # Def: S-layer domain protein # Organism: Paenibacillus # Pathway: not_defined # 41 212 39 218 2026 169 50.0 7e-41 MHKNKFIYSLAVLSSLVLGSAYGVAAHADDSGASSANTHDVTIDGKNVDTNPANTYKGFG MVSANGTSRLLLDYKAEHPAQYWQIMKDLFDPQTGALNFIKVEMGADVNTSTASTPATMR SENESANTLRGWDWHIVADAKKINPGLQVDMLHWSEPKWVSDKKSAGQDAYYVARYKWIK ETLTSVYKTYGIKLNDVSADKNETKNPEPDWIIYL >gi|238617817|gb|GG669604.1| GENE 1070 1160898 - 1163462 1812 854 aa, chain + ## HITS:1 COG:no KEGG:Pjdr2_4665 NR:ns ## KEGG: Pjdr2_4665 # Name: not_defined # Def: S-layer domain protein # Organism: Paenibacillus # Pathway: not_defined # 1 554 254 803 2026 322 38.0 3e-86 MHDNPDLRNAVDVISMHYQTHTQPYMKEMNDQYHKEIWYSEGIAPSGYAELRNNADPSKQ GLGGQKGALDVVNAFINMYHSKNGTTDSAPDVSANMTRYEFQPPVSAFYDGGQYSSKSLI DAETPWSGNYYVDAGLPVTQQISEFAKTGWQYVQGASEGISTGNNPYSSSSDNRLALTSP DKKDYSVVITNDSTQPRTYNYTLTNMANPDKTLHVWQTSGPKDGQKYDANWLKSVANVTP KKNQDGNYTFSYTVPANSIVTLTTTTGQQPYQDQNSQKMYADDQLSLPYADDFEYSDSKY QNYQDTTVLDSAKQGYLTSRDGTPRYFEDIGGSFQVVKSNDTGHGNVLQGMIDKSIHADG EWNAKNGNDTVMGDNRWANYKFSSDFKIDNNDDGNGTNYVSLLVRNLITQGGSKSAEDTG YQLRVFKDGTAKLIKDQGDVATANLQNFDATKWHNAQVVADGNTITAFVDGKQVFNYTDK SSSYATGKVGLNTNYSHGQFDNVKIESINGKASFVQRYDDVDSAVTYTGTWRHDYPTGYD NFNRTISTSSNGTMAFDVKGTGFKLDGATDSANIKVSVDGKVVADNQAINKTTKRATSYA LTGLSDGTHHVTVQVLNGNFSVDAIDDDAPLASTPSGGNTGSETGSSSSSSSVPTTSSSS SSSSSSSSSSSATTGSSSTSTGSTTTGATTETKPSKIKIGESIVAVKKIYLYKNADFKVG QRLATYPKRSRINRPTFVVTGYARSSNGTLRFQVKDTDSHSRNFGKSGYITASSRFVSPL FETRLPKTKAITVISKKGLNAYQTVSLKGKIKHYKRGTHLKVKAIKRYKLTTRYQLSNGH YVSANKGLVIQGTR >gi|238617817|gb|GG669604.1| GENE 1071 1163664 - 1166015 1621 783 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1948 NR:ns ## KEGG: Lbuc_1948 # Name: not_defined # Def: lipoprotein # Organism: L.buchneri # Pathway: not_defined # 252 783 442 950 950 330 42.0 1e-88 MQLFSGPSSGSFSKRFKILLMTLLTTITIIFGFAMMGGQANTAAVARADSIDTWMPNKKL QQLVLFNLNEQQPDGKTWASVNDIKESDMALLAELQVDSNSTDQNINTTYNDGKNYSLEG LQYAINLKKLVLFAGLNYPPRQFRGNIRDLTPIEKLTKLTYVDVRQNEITDVTPLVGLTN LKYLNISFNYMADLSKLTASQYTDGFSYQGQTVNLSPVYIGSGTTYEMASPLKLPGGETA KMVMSGAAVLQTIGLDNRSGKYIVLPFYKGGTATRDGNGGLKYTGLPTQIMPGPTSNPIP GQIEKIIQNDYTYFMIGQYFDSTAGQNPIFTVTLPYVNEKIAGQNVTVYYIDSTTGNVIQ SKQLSGNLGDSYDVTTAEYKLATISGTDGVTYKLDTNRLPANGIGTISDKPQTVYYYYTK SEPVVEHKVTVHFVDEKGTVLQAADEKSGKTGDTYLAPKIPSTIIKDGITYELMGEKDQK TLPKTFSDNDQTFTYVYKVKSTGGGSGGGSGGSGGGVTTTPLTPLIPAKPATPSTPITPS TPITPTTPDDPNAGLVAKKGEAVYGINKIYLYRKPTFNKTQRLTVYTKKPRINRPMFVVT DYAKSANGKLRYYVKDVNHKSKTVGKTGYITTNAKYVIPVYYQGKHATITVINPRGVNAY RNKNLTKKVKNYKQGTVLKVRQLKKHNLTTRFVLSNGRHVTANRKLVIAGKHKTAKYVRA KGTVNRYRNVNLTKRNGRYTKRTFKVLRWEYSRTHHMKKHGALRYRVASGYITGNTKYVK VVK >gi|238617817|gb|GG669604.1| GENE 1072 1166225 - 1168381 1507 718 aa, chain + ## HITS:1 COG:lin0661 KEGG:ns NR:ns ## COG: lin0661 COG4886 # Protein_GI_number: 16799736 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 118 205 83 160 596 60 43.0 9e-09 MQENKRGSLGLFRKRLQRYLLSFLLGMIVVAGMLFGMSLSTTARSAGIDSWMPNQQLQNL VLYDLNQQYKKEGKPVLANVNEITQDNIKDLKSLIYFPGTGAQDPILTEPVVGGNGSLGP TNPGNYSLEGLQYATNLETINMNENLNYQHQFFRNDITDVKPLSKLDKLQTLELSGNRIT DITPVANLPKLTKLNVMSNCIADLSSLDGKKFTNGLSYIGQQVVLPPVYAKDNAYKLTEP FINKLPKNARNPWTGKDLVYDQKNLAVATGGGIGYRIDARNGPTSHVQVFRISGAASVSG DDFNYNNLKTQIKPGIDVEDPWGNKAQVVRNPYTYYLIADYRMAPDSVQIPVIEYLIPYE STAISVDYVIVPVDQDGKPIAGLTPKKGSGLPGDVIEVPAYDGYETSTKKVTIPENGGNI NVVYSKKSTGGDNGNTGNGGGTGTTPGLPSTPIGPANPVEPSKPEPPTTPEKPSEPETPP TNPDGGIVAKKNQAVYAVNKIYLYQKPTFNKKQRLVYYTKKPRINRPMFVVTDYAKSKNG TLRYKVKDVNHKSATAGKTGYITANSKYVLPVYYQGKHRTITVINPKGVNLHRQKNLANK IKNYKQGTVLKVKRLETHNLTTRFVLTNGGYVTANRKLVIAGHYKFAKQVKAKGAINRYS NVNLTKKNRQYSKKTQKVFKVKRAVYSRTHDMTQRGTLRYQVAGGYITGNAKYVKVIR >gi|238617817|gb|GG669604.1| GENE 1073 1168644 - 1168856 281 70 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0068 NR:ns ## KEGG: Lbuc_0068 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 70 1 69 69 88 64.0 1e-16 MKIRQQGNSLVVTVPSRFDFKAGDEVIAVKGRDHSITYVPKMSNPFKDKAISFDHEDEAF NDMTAGREEI >gi|238617817|gb|GG669604.1| GENE 1074 1168856 - 1169236 287 126 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2062 NR:ns ## KEGG: Lbuc_2062 # Name: not_defined # Def: transcriptional modulator of MazE/toxin, MazF # Organism: L.buchneri # Pathway: not_defined # 4 123 9 128 130 126 47.0 3e-28 MRDYQYHGYTPRQGDIITVNLDPQVGREIKKRRPVVVVSSDGYNAKTGFVQVCPITHTIR KRAGFFSMNTRHVTGQVNAIQLRSLDFISERRAIKKVDELDPETFGKVAQFIRFIFDFDQ VIDFGE >gi|238617817|gb|GG669604.1| GENE 1075 1169494 - 1170966 789 490 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2303 NR:ns ## KEGG: Lbuc_2303 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 5 486 11 483 490 290 40.0 1e-76 MNKAQKKNQSLADQHRDEVLEAFKKKQEKLAANALKQSQVEPIEKTHESRQSKFGKKLKK ETKDNKRLKAKLRQNQIERRTGRQKIRQLKKMVTNLEAQRTKLQAELLETRRAQAESKQQ VEAFYRVRDGLEKNNQAQGRRIQSLSDMNKRVTQNYQKLLRSTEGQELGALRSQNKSLIN ENQNLKEDIKGFRKRLDNLKQKSKLDQLNNRLSQSRQPDPHMKQASIQQLVSELFYRLDE RNVMRFLSVLPLYNRVNYLLKKAEENTILHTVDSDHLHNSQQLYGYVKPINGQPAFISLD GSIFPGPQVQGNRFDLVENDVYRGNYFADTDSFVINKRYTALTEDKNQLGSDHFQSGRQD KRPVKDTFAKRFMEDHPDAKAILGNKTIRIVTWFKQISYKRLFQPFDVQIDVLDPSEQSG DFIYQRIENVDTDLAFILIEGSHHVNSRIYKDRPAAHPDRIRILDNASPKTLLEMTYNHF KSLETRQNQS >gi|238617817|gb|GG669604.1| GENE 1076 1171040 - 1171159 57 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTSLKRLFGRHFKKDSTRTENSKISLKGRLFWNSVLKGQ >gi|238617817|gb|GG669604.1| GENE 1077 1171487 - 1171618 109 43 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227511876|ref|ZP_03941925.1| ## NR: gi|227511876|ref|ZP_03941925.1| hypothetical protein HMPREF0497_0998 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0497_0998 [Lactobacillus buchneri ATCC 11577] # 1 43 1 43 43 65 88.0 2e-09 MDRNVNASDKSKRVPLKAWYKDAICWLLIAVVAVLIITSWAFF >gi|238617817|gb|GG669604.1| GENE 1078 1171696 - 1171947 349 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508954|ref|ZP_03939003.1| ## NR: gi|227508954|ref|ZP_03939003.1| hypothetical protein HMPREF0496_1117 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1117 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 83 1 83 83 141 100.0 2e-32 MDKLNRKSRKHLEEILVNYVLEESIHADFGYMYSSVGSPQLISQLISAREKPVKRTVAKL NDKDLLEKLDRVQSLAADADAVN >gi|238617817|gb|GG669604.1| GENE 1079 1172432 - 1173247 634 271 aa, chain + ## HITS:1 COG:L0470 KEGG:ns NR:ns ## COG: L0470 COG2801 # Protein_GI_number: 15672806 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 2 269 13 271 272 248 50.0 1e-65 MYWQKRFNLGDPDKELEDQILLIHRQNPDYGYRRMTVALRGYGMLVNKKRIQRLMRKMGI HVKGYSTHVSEYRSTYHSYEGKVGFICKNRLKRRFQTPVCHQKITTDTTELVYFDICIGE PATVHGLYLDVFLDMYNSEIISYRLSPVPNEQAILEGLDEAIRITDDCRYRRTFHSDQGW GYQSADYHRKLKQHRIFQSMSRKGTCLDNAIMENFFSILKREMYYGKTFHSYDELKTAID RYLYYYNYQRIKEKLDWQSPVMYRLNASNRS >gi|238617817|gb|GG669604.1| GENE 1080 1173607 - 1174611 479 334 aa, chain + ## HITS:1 COG:SA0410 KEGG:ns NR:ns ## COG: SA0410 COG0523 # Protein_GI_number: 15926128 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Staphylococcus aureus N315 # 12 321 61 381 400 205 36.0 8e-53 MIEKNPYFSQADRLIALTNGSISGNLRQRLVDAVYDLAASGDVDLILIESSGIVQPDMVA KFISRGKNTDGRRLSDSCRLDTNVTIVDGFRVLQQLMPGVGEYNQDFTQSNQLIINQIEF CDVLLFNKTDLLTNEQQLYLKKFIRQLQPWAKFLETRFAVVPVSKVVNTRLFDEKTELKD YDRSDDLSHFSEHHDLKFGIESFVYRRRRPFNPKRFNDWLDQWPPEITRCKGVMWLITQP ERVFNISQSGRAMDIIPSGYWIASMKEWEIKKMFTVRKHLREIWDERFGDRMIELVFIGQ NMDKETIIHDLDACLMREDEVVTLRDDPFRLTHH >gi|238617817|gb|GG669604.1| GENE 1081 1174592 - 1175047 226 151 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508958|ref|ZP_03939007.1| ## NR: gi|227508958|ref|ZP_03939007.1| hypothetical protein HMPREF0496_1121 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1121 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 151 1 151 151 249 100.0 5e-65 MAFNEDQDFIQQLAQLNHEMTDYLNHHISYPNINANNYFYLLKLLNNPNIIQNDFSSLVK LNQSTITRSVNALEKNGYLMKHAATDKRSHTLQLTESGTTAAKDISALIDDLNNNILACD PKIDVATLIQRMRQLNSPSPTSHNRLNGESA >gi|238617817|gb|GG669604.1| GENE 1082 1175480 - 1175875 360 131 aa, chain + ## HITS:1 COG:lin2295 KEGG:ns NR:ns ## COG: lin2295 COG1393 # Protein_GI_number: 16801359 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 123 1 123 131 122 46.0 2e-28 MLHLLVAPSSTSSRKARQWLTEHHLEFAERDIYRRPLHADEIKQILRLSENGCEDIVATR SNAYKRVKTDLDAMPLSQFIDVLTKHPEMLKRPILFNDEKLLVGFNDEEIRNFLPRELRK RNLETLLKKSS >gi|238617817|gb|GG669604.1| GENE 1083 1176033 - 1176923 927 296 aa, chain + ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 3 294 2 297 298 191 40.0 2e-48 MKKSILSVMVALTLSSTGVAIAAPIQNQASPTAIAATTKSGYGAGSQIKLSGAVNVRDLG GYRTKSGLKVKPNMLIRSAKLNTLTKHDQQVLTKQHHLAVDVDLRTPAEMKAAPDVKMSG VTYVADPVVSNKESQSNDKIFDKNGEQAMIDYYNYFVDSTQGRAAYKKLFHELLTVPKGK AVLWHCSAGKDRAGFGTALVLTALGVDKDTIYKDFLLSNKYRKQTNDAALAALKKKGASK TELKSNYYGLIVEKQYLDEAYKAANKHYGSMNGFLHKGLGLTSSDINKLRAKYLEK >gi|238617817|gb|GG669604.1| GENE 1084 1177311 - 1177652 386 113 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1917 NR:ns ## KEGG: Lbuc_1917 # Name: not_defined # Def: cytidyltransferase-like domain-containing protein (EC:2.7.7.2) # Organism: L.buchneri # Pathway: not_defined # 10 110 179 275 276 79 42.0 4e-14 MDPKQINEPSNIDERLTTNDLIKYRYETKGELINAQMDGRSIINPKDDPERIPDSGEYTA IVKIADQKRITPVLVKNSSKADANAVIYLNLRGFTKLPHYSPIPVTITWIKKL >gi|238617817|gb|GG669604.1| GENE 1085 1177739 - 1179274 664 511 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2230 NR:ns ## KEGG: Lbuc_2230 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 2 491 31 523 534 262 33.0 3e-68 MTISGYFAKFQKIIYPGKNVLLIGTIVALGFFALIWGVAYWLSKHYVGWLVVTLTLLTIP KIMLIGLFKISPVSDIYSYTNLGGSSASGDSWRWMYSNGGLDLNPLFPSVIHISSAFGWI DRLFINKPFTIQLFNILITLTTAVLIYYFGRQIGNHFVGILSSLLFYLMPTYYIYSVLPG YEPLWLLLLVISSLCFNRWRLGHWQISNSYYWGWLLMTIVSLILAQLIRPLTPIWVLSFF FFTWMTLHDNHISKAYQKTRTPYQLAGSFLILIIFTLFLAIAPKVDRQIYHIPFTNNSSL YSFTVGSNIRAKGMYDLTLINKLEKINRKNHSAQRYNQMNVLLKSRLKHNLRYLQRTNGW LNFLIQKNQVLSQSFYGIQFFVMNTKSLSDASLSSHSNVSFPRWLTGFTTGFQIILILST IIGLLFYWPNLKYWRIGNGIVLMAIILDGVLLASCLVEVQSRYQIAWYLPMIILGALGMG KYDPKAPDKEDVKKIEEAFDNLKSPSNKTKY >gi|238617817|gb|GG669604.1| GENE 1086 1179349 - 1180578 579 409 aa, chain - ## HITS:1 COG:L95846 KEGG:ns NR:ns ## COG: L95846 COG1215 # Protein_GI_number: 15673247 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Lactococcus lactis # 3 402 409 814 824 97 26.0 6e-20 MGFGIWNLFTALRDKHDSQHYTNDPVRSFDHLFVFVPALNEVQTIVKTVNVLLASLNSLP IKTTLVVIDDASNDGTTQKLKLLSNLSGLKVIFRQFPNAQQGKGMALNSALEWVETRSMT PQRTIIGVIDSDSQPNSQIMAQIYKGFTNSNYDLIQTGIGISNQTSFLTLMQAFEFQVSN YLEQVLRMDFGSAMASGNGQFMTLEMASAVRWRSSLLDDLEFSINGFFKGFYGGFLPNVL MPQEAVTTYKALVKQRTRWCQGGMQCLFSYGKRIFINHRIPSRLKANLLLFMLIPFGSMI FSIGALTSIATMYFLLIYNYQETIGIILTIVIFGLSTSGIMIIAADRMHFVNHQKTVFTT SFKMAVGNLFYIWCLVPIPFISLWRLVTGQNNWVKTAHQISSDFKGVPK >gi|238617817|gb|GG669604.1| GENE 1087 1181144 - 1181425 341 93 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508965|ref|ZP_03939014.1| ## NR: gi|227508965|ref|ZP_03939014.1| hypothetical protein HMPREF0496_1128 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1128 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 93 4 96 96 170 100.0 4e-41 MKLPDLILQLQLSFEDYNQAAKKQDLDAYYIEDLNGMATIHSSRTKLYFEIPRDLPKLME HLKASAQTNECTMGTLADLEKIEKRLVAGQSNR >gi|238617817|gb|GG669604.1| GENE 1088 1181610 - 1183073 1175 487 aa, chain + ## HITS:1 COG:CAC3234 KEGG:ns NR:ns ## COG: CAC3234 COG4640 # Protein_GI_number: 15896480 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 16 291 3 287 470 62 23.0 2e-09 MTSKESSDEQGSELLFCPNCGQKVKPTDEFCPNCGYNLNAYRQGNPVEVDNGKQVGKPKK RLFSRATKKQISKHRKRRRRLITFGVIVVVAAAGLIAYGEHYYSKASTLSRIVKSAKNDH HDLHRYFYTNDPSLTINNASLKPLVRYFHDSPEALTSFKQQMGTIGKFDNNRLEYKENGH RFLIFPKYEVQVRPVYVSLSVNKKNAKIKQGAKVIATSNSTRFVKKIGPLVPGKYELSSS ANINGHSLSNDNTYHLNSNNQSIPLTLKTVSFNVHGPQGTEVVINSKDQGRIGANGVMNF KDFPWTQELKVQGIYQAGKNNISSQSRVISDQSGDHDVTLPFKGLVSYDDADTLLSNLCD ATSGLSNNGDLADATDDDGDDLSSFFAGGESDPNYLQFEKMGKGYYHDDDIDGTDMSDTI DSIKLSSQNSSDVTFDLKYKFDAGDHYHVQIFRYTANMVVNGDDSDNPLQINSLSGAQKV DDYDEDE >gi|238617817|gb|GG669604.1| GENE 1089 1183099 - 1183452 174 117 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508968|ref|ZP_03939017.1| ## NR: gi|227508968|ref|ZP_03939017.1| hypothetical protein HMPREF0496_1131 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1131 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 117 1 117 117 149 100.0 6e-35 MENEFKFCPKCGAKVKANAKFCPKCGNRFIEMSQNRSSNDQSNAGSSQPQNMASGKKPFK HRNWLIAGVIAVIVVIVTVTIASSIITKQQTQAKKTAMIQSSQLKESIKKEKRSKRK >gi|238617817|gb|GG669604.1| GENE 1090 1183499 - 1183744 197 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508969|ref|ZP_03939018.1| ## NR: gi|227508969|ref|ZP_03939018.1| hypothetical protein HMPREF0496_1132 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1132 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 71 1 71 81 72 100.0 1e-11 MIQNDWDLDAECDDVTITSSYGGNQYGGYASVSDDDGDQTTVDVTVTNVKYDHNVSVEID GDGHDTLNNTFDTYDDEDDDY >gi|238617817|gb|GG669604.1| GENE 1091 1183762 - 1184211 353 149 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508970|ref|ZP_03939019.1| ## NR: gi|227508970|ref|ZP_03939019.1| hypothetical protein HMPREF0496_1133 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1133 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 149 1 149 149 302 100.0 4e-81 MLSEVYRICPKCGTSNEVAANFCLKCGSKLSKDDEKPLLEHGGQLSEVLAQMDLTPEEQL AAQKIVIMTGDMPQGYRFQDVVYVNATGVLGQSYKEVMEQLSKHLYSTLYSLGMAGISNL HISHTVVPDEGVGNHFDLFAYGNGFSVRS >gi|238617817|gb|GG669604.1| GENE 1092 1184349 - 1185326 535 325 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508971|ref|ZP_03939020.1| ## NR: gi|227508971|ref|ZP_03939020.1| hypothetical protein HMPREF0496_1134 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1134 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 325 1 325 325 663 100.0 0 MSGVKGFCPHCGAKLRDDAQYCQQCGYKVPTVSLDDRLSSNKTHREADDQEQGFMHGNLK TVYKRSAVANFIQRNKTIIDPIVAWLPGILFVFLVIGLLIESDGTFYIAFVLLMVDIGVR ICKNKALLKKSFLGKWIGNAQYSSGKEQILAETKNNQANSEYGRGKETDKTSHVAHYTMR VREFLAMLTLCVVVGSIYFGDFVTAGVSFWNKRGGIDLSALLSTGGYLDGDLNQLKIVLT ILPVLGLLFIVLPNLFLKMIGLLAAFATDGLIGYIIYTIDQYMNDGNQSVLMSFQFGPSA IVMGVAAAIATLFAISCLFPSSVRH >gi|238617817|gb|GG669604.1| GENE 1093 1185417 - 1186715 1456 432 aa, chain - ## HITS:1 COG:CC2315 KEGG:ns NR:ns ## COG: CC2315 COG0477 # Protein_GI_number: 16126554 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Caulobacter vibrioides # 67 432 47 418 418 130 31.0 7e-30 MSQNNKPKEPEEVKTAVGEITNAKIKDSQQPKLPWMVSSAMFLAPLCWYGPIGSTRSVLI PQLFSQIDPAQKVWAVGILATVASIVGAVANLLFGAFSDVTRSRFGKRKPYIVLGTIAIA ISLVVIANLKSIPAIIGVWIIAAAAENAIAAAIYPQISDRVAPKWRGTVSTFYGVGFTIA QQGFALLAAQFLGNVKFGIYTMAACTVVLAIIHELLIQEKGNLDEPKVRLDKDTLKKYFF FPTHDARDFYLALTGKFFMVVGSTIVTTFLLFLFTDYIGQNTGEAGKSISIFSMIMLVIG VTFALIGGPLADKMKRVKAPVVIATFALGAAALFPLFVQKPWAMFAYAVVAAFGNGLYNS VDGALNMDVLPSSDTAGKDLGLINLANTLGQMLGAMVASAIVEGFGYHAIFIFAVGMEII GGIAIAMIKRVR >gi|238617817|gb|GG669604.1| GENE 1094 1187207 - 1188058 593 283 aa, chain + ## HITS:1 COG:SA2225 KEGG:ns NR:ns ## COG: SA2225 COG1409 # Protein_GI_number: 15928015 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Staphylococcus aureus N315 # 1 281 1 267 268 91 26.0 1e-18 MRIGFISDLHIDFNRRHHFIAVMTELVKKERLDHLVIMGDTANGLERNLAFNDALSQSLE IPFHTLVGNHDLYVSHPREKTVSMIQQRSRDAYHELDESPFSLTQHPLLTTHWVITGING WYDYTFAKGFSDNRGSTLANNWVAKHVWPDQLYINGNQIDYCRDRDWVTKQLFDWQHQIN QMQLGSRKLLVAMHMLPTKRLVRQMPVPFYDRFTYQLGSERYRQLFEQNHVRVALSGHSH MPNVVDYRGIHYQNVSLGYDFQWQNPADALGELQRVMFILEDE >gi|238617817|gb|GG669604.1| GENE 1095 1188272 - 1188871 105 199 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508974|ref|ZP_03939023.1| ## NR: gi|227508974|ref|ZP_03939023.1| hypothetical protein HMPREF0496_1137 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1137 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 199 19 217 217 375 100.0 1e-102 MLDALIDTYENCKDENQAKIAYRRYLLIVKCLATASKFEVRDFEAIMQGKRRSLKSGHLL FYLDDVSQKDVEINSFELVKNIEGWGNKESLELHHFISQSPIFELRINACEFGFRSILFL SSKEFGDYFDQFQCYCDSFRKEKYITRKARRIGNKKTNEAVLSTAEIYQSFRKDENSFST FFDEARIIVAEGGSYFDTY >gi|238617817|gb|GG669604.1| GENE 1096 1188594 - 1189370 424 258 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508975|ref|ZP_03939024.1| ## NR: gi|227508975|ref|ZP_03939024.1| hypothetical protein HMPREF0496_1138 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1138 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 76 258 1 183 183 350 100.0 4e-95 MLVNSDLGLFFFYLLKNLEIISINFSAIATLLERKSTLRGKQGELGTKKQMKQYYPQPKF ISHLEKMKIHFPLFSMKQELLWPKEGVILTRIKNVKKHVQKLMNQDHYKKHTELMAALLK YNLYVGRDLSWRKLAEDNDLKMDEARGYLSGRCTDLAMYDQLINYVKNEYSIIQSLDFHT NYPLSDLKKDNDDSSVKHSTFGISKIDNTSHPYYQYNLSSVGRPIRLSPDQFDTESSFSF KDNLHKSVKTIIISGTVN >gi|238617817|gb|GG669604.1| GENE 1097 1189467 - 1189865 233 132 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508976|ref|ZP_03939025.1| ## NR: gi|227508976|ref|ZP_03939025.1| hypothetical protein HMPREF0496_1139 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1139 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 132 33 164 164 254 100.0 2e-66 MKGYLKGKSYFNADNLRFDAGQTSMTINFTPDNLNKDEALVLFTEARVLYNTNEHSGFVV AKSKMTFLGAIKWNENDVQNFLNQRAIEIMTPVLKKITFLMYALFDSSEIIGMVPDLLEL AAKRVEGSHSED >gi|238617817|gb|GG669604.1| GENE 1098 1189954 - 1191366 1172 470 aa, chain - ## HITS:1 COG:NMB0536 KEGG:ns NR:ns ## COG: NMB0536 COG1757 # Protein_GI_number: 15676442 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Neisseria meningitidis MC58 # 10 454 14 458 459 262 36.0 9e-70 MTKSKLGLVEASIVLMIILAIMGIGVIGFGLSPQVPVLLAITVAIFWAKVRGFDWHEINA GIKDGIDKGIIPIVIFILIGAMISTWIAAGTIPTLMVIGFKAISAQWFLPTVFLVCSLVG AAVGSCFTVVSTVGIAFFGIGVTMNFNPALVAGAIIAGGIFGDKLSPLSETNNLAAAVVD TDLFNHMKTILWSTIPAATISTIAFALLGMGHNHADMAKINTTVTALNNDFHISIIALIP IALVFICAAFKMAAIPTMLLNIFVSAAMMFMNNPQLNMTKASNIITNGFVAKTSNSEVNL LLSRGGIVSMMPTVALIVLTLSLGGLLVHFGLINAVMSPLSTKLNSSAKLITAALAACIG VNIFVGEQFLSIILPGRAFKQTFNNGGLASAALGRVLEDGGTVLNYLVPWGVGGVFIANT LGVPTISYLPFVFFSLLCPVFSLLSGFTGIGLKKSTTSKAQEERPVPAQN >gi|238617817|gb|GG669604.1| GENE 1099 1191760 - 1192401 430 213 aa, chain - ## HITS:1 COG:no KEGG:LLKF_1648 NR:ns ## KEGG: LLKF_1648 # Name: yphA # Def: NADH dehydrogenase # Organism: L.lactis_KF147 # Pathway: not_defined # 1 212 1 206 207 167 44.0 4e-40 MIITVVGGNGFVGSGMLKELSQFDDFELYSLSRSGLPNKHVTLPNVKWLKGDVSQPGDWE RIIAKSDWVIDCVGILFPNPLTKTSYWKNSIQPAESLINTIHRQNIASDNPKKTHFLFVS ANYGPFFMAPYIKAKLEVEKDMARLLPKNSIVVYPGIVTDSSKPTTRLLENLAKALTLSL YFKRLRFVSRDVIAQETVRILTGETSFLTERVD >gi|238617817|gb|GG669604.1| GENE 1100 1192675 - 1193040 464 121 aa, chain + ## HITS:1 COG:no KEGG:LC705_00055 NR:ns ## KEGG: LC705_00055 # Name: not_defined # Def: FMN-binding protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 121 1 121 121 176 67.0 2e-43 MDQKFLDVMKHEGPATIVTINAQPAHVVNTWMSYVQVTDKQLLIPAAGMHSIEQDFSTDN HVIITVGSKEVEGTQGPGAGFHVYGTGQFLTSGDDFDTMKKKFPWITRALKVDIDKIEQK I >gi|238617817|gb|GG669604.1| GENE 1101 1193168 - 1194136 830 322 aa, chain + ## HITS:1 COG:aq_1362 KEGG:ns NR:ns ## COG: aq_1362 COG0604 # Protein_GI_number: 15606558 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Aquifex aeolicus # 1 317 1 340 343 109 29.0 8e-24 MKAIVIDQPGGPEQLKLKDVPTPQTKPGWSLVKIKGFGINRAEIFTRLGYSPVKFPRILG IEGVGIVSKSTDSKRLPEGQTVISLMHGMGRAFDGSYAEYALLPNDSIYPVETQLSWPEL AALPETFYTAYGSLLNMKIKTAKTLLIRGGTSGVGVAAMRLAKAMVPEITVAGTTRDPEK FARMKAAGYDDTLLDHQRRLQTEDHFDAILELVGPDTLMDSLTHLNVNGITCFTGELSGM DDARWTVADFDPFGIPAGAYLTHFSSDAANASDLNDLIKLVETQRIDIKPTKIFDLAHTG DAQAALDQADSFGKVVVVNSDY >gi|238617817|gb|GG669604.1| GENE 1102 1194210 - 1195178 652 322 aa, chain - ## HITS:1 COG:SPy1133 KEGG:ns NR:ns ## COG: SPy1133 COG1125 # Protein_GI_number: 15675110 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 6 244 1 240 242 245 47.0 8e-65 MPNTPVIQLSNISVVYDQQKAIDDLSLSVYPHEIMVLVGESGGGKTTILRTISGLVKPAS GHILVNGLTLNDQNLRKIRLNMGYVLQQISLFPNMTINQNLTLLPEIKHQSKTAADQTIK ELMAAAKLPIDYLSKYPNELSGGEQQRVGIIRAFGTKPDLILMDEPFSALDPVSREQLQD LTLSIHQHFNNTILFITHDMNEALKMGQQIGVVKDGQIIQLDTPDNLVRHPSNDYVRTLF NGSEAHKIENVYIRRLVLAGYGRKTPFEKLPVTSVEGDRTLGDCYQLLAQNQQLAVRRNS QVIGYLNSESILNFLATKATNN >gi|238617817|gb|GG669604.1| GENE 1103 1195183 - 1196721 1173 512 aa, chain - ## HITS:1 COG:SP1860_2 KEGG:ns NR:ns ## COG: SP1860_2 COG1732 # Protein_GI_number: 15901688 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 212 512 2 299 299 277 47.0 3e-74 MSITAITHFFTANAKFINALMEHVYLTLISLIIAIVIAIPLAVYARNHRIFAHIALGFTS IMQTIPSLAILGILIPIVGIGSKPAIIALVIYGILPIYSNTYTALTTIDPNLTEAAEVFG LTKWQRLFRIELPLSTDSILTGIKTSTVLIIGTATLAALIGAGGLGTFILLGIDRSNTAL TLTGAIGSALLAVVFSWLITRFGRLKAKSMVIVGGTALLLLLLGIIAPKVYTATTQPEKI VIAGKLGSEPDILINMYRDLIEAGDKKIDVDLKPNFGKTSFLFSALKSNQINIYPEFTGT VLEDIIPNSERQLQNKSATQIYHMAKNELAAKYNMTYGSPLNYNNTYTVVTTQKFAKRHH LHTISDLKKLQNRLHSGFDLEFMNRDDGYKGLVKKYGLSFNNTDLDPDLRYQAIRRGQVQ VIDGYSTDSQIRQYHLVSLRDNKHLFPTYQGAPLMTKAFAKKHPAVVKQLHQLAGKITAK EMREMNYDVNVKKISAAKVARHYLQRHHLLRK >gi|238617817|gb|GG669604.1| GENE 1104 1196893 - 1198227 351 444 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 5 437 4 441 458 139 27 3e-31 MKTHYDVIIFGAGPAGTAAAYGLVGSKSVLVIENDLFGGTCPNRGCDPKKMLYSAVQAKD RVARMQESGLKDVPTIDWKQLMAFKRGYTSQIPGGTKRGMSGAGIDTYHGQAAFLDQHRI QLGDQTTVSADEVILATGRRPRLLDIPGKSFLKTSTDFLDLDALPKHITFVGAGLVSMEL ANIANKAGSDVDIIHHNDQPLKAFPQPFVAQLVQDMIDDGITFHFNQNLKAVSKNETGYT LTTDLETLASDYVVEAVGRSANSDQLQLENCGVKTSSRGVLVDDHLRTNVSTIYAIGDVV DKAKPKLTPVASFEGRYVAELLTKKTTAPIQYPVIPQILFGTTEVGQVGVGYQEALSKPE KYHVSAFDLTHWYTYNRIKDDVAKAMVIRDANTKQIVGFDVLSSIGEHLLNAFSLAMNLK LSNEQIQDMIFAYPSVSSDLQYLV >gi|238617817|gb|GG669604.1| GENE 1105 1198391 - 1198819 356 142 aa, chain + ## HITS:1 COG:CAC3669 KEGG:ns NR:ns ## COG: CAC3669 COG1846 # Protein_GI_number: 15896901 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 3 106 2 105 153 60 25.0 7e-10 MTDIEIDGLIATINTASRQLQTYLDEQLKPLKLTSSNYYFILKINQAPTLTQDQLFKRIY LSQSNVTRRLEQLIRLGYVQKERSQTDGRSWSISLTSTGKALVPKLNERLEYVNNRVFSG IDRVTQDRLMAALIKVEQNLMQ >gi|238617817|gb|GG669604.1| GENE 1106 1198849 - 1199433 558 194 aa, chain + ## HITS:1 COG:no KEGG:LSEI_0317 NR:ns ## KEGG: LSEI_0317 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 15 194 9 187 187 186 50.0 5e-46 MTNYVKIFDKPNHDLIIPEGFKAITADQRQRNHERVTVVRYQRPGKVEPNNAHVTVIYGS DQRLISYNNFAIETHAALPGERVAIDKANQVFERLDSAYASGLTFMRVDRLSRTFRDDQG QVINIPILWVKFAHQNGSYNWVSIGADNQVVEVERESNWDYFRSRRATEEWNYDHWVLAR MGRGPQLEAPEALA >gi|238617817|gb|GG669604.1| GENE 1107 1199447 - 1199656 251 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227508987|ref|ZP_03939036.1| ## NR: gi|227508987|ref|ZP_03939036.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 69 1 69 69 101 100.0 1e-20 MDSEDRFNQLMTQLGSLNEQVRQLEDVDYMTATYKGYSNAGLTLEEVKDEIDRLRQQIET LNRELDAFD >gi|238617817|gb|GG669604.1| GENE 1108 1199922 - 1201316 1295 464 aa, chain + ## HITS:1 COG:SPy1654 KEGG:ns NR:ns ## COG: SPy1654 COG1113 # Protein_GI_number: 15675525 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Streptococcus pyogenes M1 GAS # 7 447 11 451 459 459 54.0 1e-129 MKSKIVENQDGTMRALSNRHVQMIAIGGTIGTGLFLGSGSTISKTGPSVMLVYLTLGLFF FFMMRAIGEMFYSDPSQHTFVSFISRYLGPTVGHFTGWTYWIGLVFVCMAELTATATYVQ YWFPNIPSWIVELIFLGVLASVNLIAARLFGEAEFWFAMIKIVAIVAMIVTGIFMMTSHS VTPLGHASLTNVFHNFSLFPHGAFNFISAFPMVFFAFQGIEFVSITIGEAKSPHTVIKKA VNETLLRILLFYIGALIVIMGIIPWTSLSANSSPFVQVFKLAGFPAAAAMINFVVLTSAA SSLNSCIFSAGRHFYQLATEVPENSWMHKTFAKISKNGVPAAAIILSAALVLITPLMSLT TAITSVFTIVTGVSSDMYIIVYTLAMVAHRKYRASSDFLPNGFVMPWYKVTSPLTIFFFG VIFVSLFFIPEDIIGAVGAIVWTLVFGGLEYFRQRKLVPANMDQ >gi|238617817|gb|GG669604.1| GENE 1109 1201521 - 1202687 874 388 aa, chain + ## HITS:1 COG:BS_yhbA KEGG:ns NR:ns ## COG: BS_yhbA COG1600 # Protein_GI_number: 16077956 # Func_class: C Energy production and conversion # Function: Uncharacterized Fe-S protein # Organism: Bacillus subtilis # 7 345 55 392 435 406 54.0 1e-113 MSASVTLKQQIITESQKLGIDKIGFTTADDFEELRSSLEAQKAAGHTSGFEHPNIDERLN PTLIFDHPQSIIAIALAYPSRMKQQPKRTGLKRGQFARASWGDDYHHILREKMALLIDRV KDIVGEGNARFEPMVDTGQLIDVAVAHRAGLGFIGKNGLLITEEFGSFVYLGEMITDLKL EPDTPIPCQCGECTRCLDACPVQALLGDGRMNAQRCLSYQTQTKGLMADEFRPKIRNVIY GCDICQVACPFNRGKDFHLHQRMEPDVEKVRPELLPMLKLSNKQFNDRFGQMAGAWRGKK PLQRNAIIALVNLGDVSAVDDLLHVMSQDPRPMIRATAAYAVGRLSRSYETTSRAKVAEQ YQKELVSGQEEAFLKEYRRALETIDALK >gi|238617817|gb|GG669604.1| GENE 1110 1202779 - 1203801 732 340 aa, chain - ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 19 306 15 289 289 164 35.0 2e-40 MMTNRHSNMWRIGYFALGSIIFIAIGLFLWHDHQDQERLAEENYINSNTPTLFIHGWGGT LRSEKKMASDAEASDAAQRRMIIRVRPNGKIDVTGTIEKWMRNPIIFLRMDNNRAGEFQY ARWLTKVCKLLKSKYHIDNLNFVGHSMGSYATVYYNMMNGNRQDLPRANKLCLLAGPYNG IINNGKQNQPITGPLAKLWDDQPNANKLLKNGRPKTIHPEYQMLNQLKDRMPRQIRILNV YGDLNDGSNSDGVVTTESALSLGYLVKGRVNYYQTFKATGPNAQHSELHNHNLAVDRSLT NFLWGKHYNMSSSAPKYNPMLDKMMNPGMAFKRQNQLKAQ >gi|238617817|gb|GG669604.1| GENE 1111 1204109 - 1205536 1245 475 aa, chain - ## HITS:1 COG:BH0994 KEGG:ns NR:ns ## COG: BH0994 COG0531 # Protein_GI_number: 15613557 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Bacillus halodurans # 70 451 3 381 395 162 29.0 2e-39 MASSLKKNIGFYGLISLGAGGVIGSSWIYTNSQFFKAYGAGGEIFGLMIAAVLAVMVSLS FAELSTIFTKSGGEVVYAYAAFGKKGALFAGWALIGSYLSILAFFVTASSLLISYLFPQI STGPYYTFAGVKVHYLELAIGIGITLFIFIVNYFGARLTGNVQIILFAGLIILGAILVVV GFIKGKPANFLPAFYPQQNSVSSVIRFVLPAMTFLTGWESVAIMAEEANIPKKLIGKVVV FSIIIAAIYYILVLLSSAFIYPWKQTANMDMGTIDAFKTAGFPLLGTFAFIISFLGLATS FLTLFAATPRLILSLARGNMLPAGLAKVHPKYGTPTNALWLVLALVLGIGWLGKGALIYF LDIGGFLIALAWSFNALSLFRIRKRYPTLKAGFRIKHLFFPVIGGLFAFSISAMTVIPGT PISLVWPYEYVVLGIWMILGLIGFLTGNQKKKVSDDFLGRSLQDLKSPVDKKSDH >gi|238617817|gb|GG669604.1| GENE 1112 1205792 - 1206937 1045 381 aa, chain - ## HITS:1 COG:CAC2834 KEGG:ns NR:ns ## COG: CAC2834 COG1929 # Protein_GI_number: 15896089 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Clostridium acetobutylicum # 4 377 7 377 380 359 55.0 5e-99 MKFVIAPDSFKGGLSAKEVAEAIKEGIKRVYPNAIYSLVPMADGGEGTVRSLVDATNGTF ITEKVTGPLGKPVDATFGILGNGTTGVIEMSQASGLQYVTGKTANPLKTTTYGTGQLILK ALDHGISELVLGIGGSATNDGGTGMAQALGARLLDQNHRDISFGGGHLNELAKIEISTID PRIKKLKLLIASDVTNPLIGQNGASMVFGPQKGGTPEMIKRLDQNLSHYATLIFQQLGKG LAHYPGAGAAGGLGAGLLAFTNAKMLRGVDLVIQYSGLKEKAKNATFVFTGEGGIDFQTK FGKTPYGVALATKQVAPNAPVIVIAGNVGDGIDSLYADNAIDAIFTSVSGVKSINEALHF AQHDISQVSENIARLIHATQK >gi|238617817|gb|GG669604.1| GENE 1113 1207006 - 1207371 312 121 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508993|ref|ZP_03939042.1| ## NR: gi|227508993|ref|ZP_03939042.1| hypothetical protein HMPREF0496_1156 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1156 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 121 1 121 121 213 100.0 4e-54 MNVTKQRIINDLINIMTDHQDSAIRNLSMRVLKDGHQSRTVHPTPFPEESIPSNHSLACF NVAAELTNLMMNNVDMTKLIVKKYTPGIVDALVHQNPTDYNNPHNVERVINNWLGLKTTE H >gi|238617817|gb|GG669604.1| GENE 1114 1207509 - 1207817 345 102 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227508994|ref|ZP_03939043.1| ## NR: gi|227508994|ref|ZP_03939043.1| hypothetical protein HMPREF0496_1157 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1157 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 102 30 131 131 192 100.0 5e-48 MDATRNKAITSIKLVKPDDPYPYHPNLASGPIPSNPSLAQFNVASELAKRLLNGDPTAEG IVGQYQPGIIGELVKQYEVDYENPRNVKMVVNTWLGINSLEE >gi|238617817|gb|GG669604.1| GENE 1115 1208232 - 1209023 708 263 aa, chain + ## HITS:1 COG:VCA0606 KEGG:ns NR:ns ## COG: VCA0606 COG0637 # Protein_GI_number: 15601364 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Vibrio cholerae # 2 257 6 262 271 100 25.0 3e-21 MIRAVIFDWAGTTIDYGNQAPAMTIKKTLKQFGIEVTFADLRQEVGLEPLTQIKALMGRE DIQKKWYIMHPDMSLEEGISQIYKWFTRNILEVLPQIAKVKAGMPTLISYLRTQGIRFAT TTRYTKEMLDQILPLASEQGFDPFINITAEDLNRTDCLDSDMISQAMRKLRIRNPRTVIK VGDSPKDILEGKDAGVVTIGMIEGSSLIGMSQQEFSILPFAKRNSMKNQVAAELEKAGAD YVVENAKDLMRLIKELDSEKVVS >gi|238617817|gb|GG669604.1| GENE 1116 1209221 - 1210171 828 316 aa, chain - ## HITS:1 COG:lin1775 KEGG:ns NR:ns ## COG: lin1775 COG0039 # Protein_GI_number: 16800843 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 1 304 1 300 302 253 42.0 3e-67 MTRKIGVIGMGHVGSTVAHYIVADGFADDLVLIDPNEKKVNADATDFEDAMSNLPVHTNL IVNDYSALKDADVVISAVGNIGLQKDNKEHDRFIELPFTKEAVKSVSQKLKDSGFSGILV NITNPCDVITMMYQHFTGFPKNRVIGTGTLLDSSRMRRAVSAELKIDPRSVTGYNLGEHG NSQFTAWSAVRVLGQPITKIAAERHIDLSKLDEVARAGGYTVFHGKHYTNYGIASAAVRL ANIIISDAHTEIPVSNYHEEYGTYLSYPAIVGRDGIIEQIKLNLTDDEKEKLQTSANYIR TRFEDTLADMEGAKAN >gi|238617817|gb|GG669604.1| GENE 1117 1210392 - 1210712 292 106 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0508 NR:ns ## KEGG: Lbuc_0508 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 106 1 106 106 173 84.0 2e-42 MDNLFDVLKMVSFNHFGFDSSQVVITDVAGKPNSLLTDLFRDVVNKINLFIDLSAAHDAG DVLASLQNHTPLPDDVLDEYGKILREPLVGINFAPQKGQMELLVNG >gi|238617817|gb|GG669604.1| GENE 1118 1210824 - 1211369 491 181 aa, chain - ## HITS:1 COG:lin2206 KEGG:ns NR:ns ## COG: lin2206 COG0311 # Protein_GI_number: 16801271 # Func_class: H Coenzyme transport and metabolism # Function: Predicted glutamine amidotransferase involved in pyridoxine biosynthesis # Organism: Listeria innocua # 2 180 4 188 188 179 49.0 2e-45 MIGVLSLQGAISEHAAVLNKIGVSNKAVLNQDDLKGLDGLIIPGGESTAIKKLMAYNHLF PAIKKLIQEGLPTFGTCAGMVLLSQPESFDMLKATVVRNGFGRQQQSFEEDLHFDALADP FHAVFIRAPYLTDVAADVNVLASIDDKAVAVSKGNVLATAFHPELTDDVRLHEYFVDHFV N >gi|238617817|gb|GG669604.1| GENE 1119 1211387 - 1212277 1052 296 aa, chain - ## HITS:1 COG:PM1232 KEGG:ns NR:ns ## COG: PM1232 COG0214 # Protein_GI_number: 15603097 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxine biosynthesis enzyme # Organism: Pasteurella multocida # 5 295 4 294 295 413 74.0 1e-115 MGKQIVGTDAVKRGMAQMQKNGVIMDVVNPEQAKIAEDAGAVAVMALERVPADIRKAGGV ARMSDPAMVESIMDAVSIPVMAKARIGHSAEARVLEAVGVDYIDESEVLTPADNEYHILK NEYTVPFVCGCRNLGEALRRIGEGASMLRTKGEPGTGNIVEAVTHIRKVQTQIRDVAAAK PDQLMTIARDLRAPYELVKWVHENGKLPVINFAAGGVSTPADAALLMNLGSDGIFVGSGI FKSKNPSKFAKAIVQATAHPTDYKLIAEVSKNLGDPMKGIDMSELSEADLMETRGN >gi|238617817|gb|GG669604.1| GENE 1120 1213094 - 1214983 1810 629 aa, chain + ## HITS:1 COG:VCA0604 KEGG:ns NR:ns ## COG: VCA0604 COG0075 # Protein_GI_number: 15601362 # Func_class: E Amino acid transport and metabolism # Function: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase # Organism: Vibrio cholerae # 267 622 4 359 367 384 53.0 1e-106 MIQAVVFDWAGTTIDYGSQAPIIAFKQAFAHFDIHIPTAEIRQDVGLDKLTHIKKMMANP AIQSKWVAKHPNIAVEDAITQIYQQFQQDIVAVLAETAQLKPGVKELVNYLDAQNIPYAS TTGYTQSMLDRVLPLAAKQGYNPKANVTSEQTDGVGRPQADMLLHAIDRLGVPDARSVIK VGDTVNDILEGKASHAISIGVVDGGNLIGLSEGEFDELTIAEQNELRNKATDELEAAGAD YVINAINDLIKLIPTINVEEQHVEPEAPILLTPGPLTTSKTVKEQMLVDHGTWDDEYKAD TQEIRSELLKVANVSADNYAAVLMQGSGTFAVEATLGTAVPKHDATLMIAINGAYGQRMA QIADYLDIDHIDVTFGEDEVTTLEKILDALAAHPEVTHFAIVHCETTTGILNSIEAIIPR VHELGITTIVDAMSSFGGVPINVEVLGIDYLISSSNKCIQGVPGFGLVIAKRRTIDRTAG NARSLSLDLYEQYKCFEEHDGKWRFTSPTHVVYAFQQALRELAAEGGVSARNKRYRQNEK KLRQGMLAIGYQPVISEEVQSPIITSFKYPNKDFDFRGFYEYLKENGFIIYPGKVSNIDS FRIGNIGQVFSEDMTRLLTLIKKYSVVKV >gi|238617817|gb|GG669604.1| GENE 1121 1216543 - 1218585 1449 680 aa, chain - ## HITS:1 COG:lin2898 KEGG:ns NR:ns ## COG: lin2898 COG2936 # Protein_GI_number: 16801958 # Func_class: R General function prediction only # Function: Predicted acyl esterases # Organism: Listeria innocua # 133 675 2 551 555 244 29.0 4e-64 MQFDFYQSGIKQATFYVQDKTIEVESFQQPRSVLTKELDKRYQSKLHTSPQHFFEKYLFT PLDFSGNKLRTQNGEHFQKRQDGHLWIQHRQKPAVNLVVSDGKLVGCQIAVRNIIAVLIR PGYENLTILKMWQDNHLLMQKPFPIASQTTQMVKMSDGTQLATEVFIPDDGQKTHPVILE RTPYGREMYYDDEQRFVQRGYVLVIQDVRGRNDSQGEWLPMYYERDDGRDTINWLANQPW SNGNVGMIGGSYGGYVQWAAASSATPHLKALVSMVTAGGPFNDTIYKNGAPISGSLAWFF STAEKKLNMANMQRNDWNDLMKVRPLSQIPVKGLGHEIPGFSKFMAHKSADTFMENMDWK ARSDKIHVPALIQSGWFDDNGVGTTEAIRATNHYPAGTRKLILGPWVHSGNAQYDLGPYH LGEHALRFDIDLQHVRWFDHFLNGVKNGIEKEPLLDYYTLNTDKWRTADSFPVNPQPSKL FLNAKKQTLDWKPSKKTESSSYVYDPATPTPHLIDVSANELEFPNDYTQVEKRSDVISFT TSPLTTPMTITGWFKAIFYASSSAVDTDWVVRLTDVTPNGQSVNIADGVLNAKFRNDLST PDLMTPGNIYQFTVETQKTSIKLPIGHRLRLDIASAAENLVFPNSNTRAGADSIDGIKAT QTIYTGESYPSHLLFNQEND >gi|238617817|gb|GG669604.1| GENE 1122 1218601 - 1220232 1339 543 aa, chain - ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 541 1 547 549 414 41.0 1e-115 MNKRKIFLTVAVASTVLLAACGKQSKSSQDKKSASFGLNTEVASMDTLKAQDPNSFDVQA AVFSGLYRMNSKDEVVDDIAKGMPKLSNGNKTYTISLRHNAKWSNGKSVTADDFVYAWQR GANPKTKSNYAFIIQTILKNGTQIATGKMSPSKLGVKALGKYKLQATLQKPTPYFKSLLT FNPYFPQNKAFVEKVGSQYATSPSKMIYNGPFKVSSYSLGANTLSLTKNTKYRGPVKAKL DKLNFQVVKSSTTGLNQYQANKLDMTFLTNNLVKNNKNRAGFKTIPNSMITYLQFNMRKK AKLPFQNKALRQAIANSIDTKQLASKILQDGSSPLSGYIPPKFVKNSATGKDFRQEGGKL YVADKAKAASQWKQAQKQLGQKSLTLQLLIDDEDWQKSTGEFLQSELEKNLPGLKVSIRV LPQQQELGLVAQGKYQMVLAQWGPDFQDPTTYLANYTNTPGRAAGYDNPKYDQLINAANG KDVNNPAKRFADFHAAEKLIVKDQQVMVPLNQQVYSILQQPKLAGVTHHMVGAPFTYATA YWK >gi|238617817|gb|GG669604.1| GENE 1123 1220258 - 1221328 1026 356 aa, chain - ## HITS:1 COG:BS_ykfB KEGG:ns NR:ns ## COG: BS_ykfB COG4948 # Protein_GI_number: 16078363 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Bacillus subtilis # 1 352 1 354 366 232 37.0 1e-60 MEITDIIAHKVKVKLTKPIKVTFGEITDVETLIIKISTDTEIFGYGEACPFEPVTGESID SELAALPLIVDSLRGKDPRNIEKNHGLMAEAILGHTALKAGIDIALYDVLGKDTGLPVYQ LLGGASNSIKTDITISIDAPKQMATEAQQYVSSGFSQLKVKAGIDPHADEQAIQAILNTV TPTTEIKVDANQGWTAKQTIAIMEKFKGTNLHAVEQPLPYWQHEQNKLIRQSISQNLMLD ESVHSPSDAMTVIKNGEADLVNIKLMKSKGIFGAEGINKIAEAAGLNCMIGCMAETSIGI CAAVHFAAAHSNVAYCDLDSFMMFKQPKWLLDKGFTQEQDRLQLSDKPGLGINVNF >gi|238617817|gb|GG669604.1| GENE 1124 1221658 - 1223517 1709 619 aa, chain + ## HITS:1 COG:MT3641 KEGG:ns NR:ns ## COG: MT3641 COG1053 # Protein_GI_number: 15843149 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Mycobacterium tuberculosis CDC1551 # 17 489 9 560 566 88 24.0 4e-17 MNQTIDTNKQSNWAATYDVIVIGFGAAGATAARFAADNGAKVLLTDAAPEGHEGGNTRYA GQVVLTGYDFDKMKQYFKQLFGPIKIDEKMLDTYVHGLTTIPDYFKRYLEIKNPVSYNKV HRDPDFEAFANGLSPEYPEFEGSETVDLTTVHDGYFDASLWKTLRGQVTKRENQIDVWLA SPAKHLIQSHETGVVEGVQIQRHDQLVDIKANNGVVMAMGGFENNNDDIQNFIGVPKLKV IGTLYNKGDGLKMAQEVGAKLWHMKSFEGFGFNTGFTFENTAEARGKFILSPWPDLSNGS IFVAADDGSRYVREDENGRHGHAFEHGSWKNPTVYSHPHLIFDREQYRQIKSRGKLPYDD FFKITVKANTIEELARKIKANPKTLVQTVERFNVFSENGEDLTLNRSGDTMRAFGDGPYY ATPLATAMLNTQGGAKRNEQAQVLDAFDQPIPHLYSAGEFGGINANQYNGGGNLAECLIF GKIAGENAATVKHDIEVTPESTSTTVDLGGNDLSSDQALSNYSVGKDQYLGVSDAGIGGR VIVRVTYRDDQLKNVEVLEESESEDVGQKAMTELPKEMVTQNTYDVDAVSGASSSSRALK SAVRNAIQKATQPAKNSAD >gi|238617817|gb|GG669604.1| GENE 1125 1223670 - 1225529 1438 619 aa, chain + ## HITS:1 COG:L137630 KEGG:ns NR:ns ## COG: L137630 COG1053 # Protein_GI_number: 15673106 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Lactococcus lactis # 13 484 59 495 502 103 27.0 1e-21 MAVGEETYWHASYDVIVLGFGGAGATAARFAADAGAHVLLVDSAPEGHEGGNTRYSAQLI GTGDNFDDLKKYYQALTAPMHLDEEMINTYVTGMVNTPNYVQKYLGVKPFSWKREKKDDT GFVDSIVREFPEYEGSKSYDYTTVTSDFFDAALWRNLREQVMKRLDHIDVLFETPAKKLI QDPESKVIKGVVIQRQQHDLNVQAKNGVVLATGGFENNQKDVEDYLGASKLAPLGTLYNK GDGIKMGREVGADMWHMANYESLGLLHGMAFAVKPGERGRLMIGKQNDLVSHGSVFVIGD DGSRYFNEAEMNRHGHLYNHGQWKVPLNQDHPYLIFDRHQKKRLDKDQIIGSYAPYKENV IKADSIDDLAKKLSVSAKILHRTFKRFNKAADKGKDPEFHRAARTMAEFAKPPYYAVPLV QTMLNTQGGPRRNVKAEVVDTNGLPIPHLYSAGELGGICANQYQGGGNLAECLIFGKIAG ENAAKPKDDTKNVEPNQEPDTMTSASQSTDTTLASDLTNDEENETFTTTDHQFIGENDDG IGGEVVVRITLDDDHQLTNVEVLKQSESEDVGLKAMTDLPKEMVKKHTADVDGISGASAS SNALKAAVKDALEKAKQGN >gi|238617817|gb|GG669604.1| GENE 1126 1225592 - 1226188 142 198 aa, chain - ## HITS:1 COG:alr0739 KEGG:ns NR:ns ## COG: alr0739 COG4430 # Protein_GI_number: 17228234 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Nostoc sp. PCC 7120 # 14 109 15 108 193 68 40.0 8e-12 MTTKTPQNYLSVKNRNEFRIWLSSNHDTAKECWVNVKRGIPKNNDHFWYVDAVEEAMCFG WIDSTYKVIEPGKPAAQRFVPRRPNSSWSELNKARCIRMEELGRMTPSGQKELPDMDPAH FSINPKIKRALKRRPGAWHFFCSCPPLYQRVRVDTIQIKESHPELFRSRLTKFANACQNH KMIGSWNDGGRLNHIYEN >gi|238617817|gb|GG669604.1| GENE 1127 1226397 - 1227719 1142 440 aa, chain + ## HITS:1 COG:lin1337 KEGG:ns NR:ns ## COG: lin1337 COG0174 # Protein_GI_number: 16800405 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Listeria innocua # 3 440 5 443 444 504 55.0 1e-142 MKTVDDIRKLAKDEKIDYLRMTFSDLNGVLKNVEIPVSLLDTALNNKIKIDGSSITGFLP IQNSDMYLYPDLDTWTIYPWITTGGNTASLICDVYNRDGTPFAGDPRLALKQLDASLSDI GCGHLNVGAEMEYFLFKTDENGHLTTELNDQASYFDVYPSDAGEACRRDTVNTLKKMGFS IEANHHEVAPGQCEIDFRFDDAVHTADRIQLLKLATKAIAVKHGLRATFMPKPLAGMNGS GMHLNTSLFDGDHNLFDDPKADHGLSALATNYLAGILTHARAFTAITNPTINSYKRLVPG YEAPTYVAWAIANRTALVRVPDGRGPATRFELRSGDPSANPYLAIASVLSAGLDGIKNKL TPPKNVEDNIYNMSAEQRTSQQIIQLPGSLPKALTTLKNDQTLAQTLGIIVPKYLEIKHK ELASFQMSVTDWEKETYFNV >gi|238617817|gb|GG669604.1| GENE 1128 1227899 - 1228462 417 187 aa, chain + ## HITS:1 COG:BS_ydeN KEGG:ns NR:ns ## COG: BS_ydeN COG3545 # Protein_GI_number: 16077593 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha/beta hydrolase fold # Organism: Bacillus subtilis # 1 187 1 188 190 94 31.0 1e-19 MSEQLIYMFHGYTSFAHDHWFPWLEKQVEDQLDIPFKKLNFPDSNHPNEAAWDLYCDQAI DARDGITLVGHSLGCIQVLHYLAQHDIKHVNVLLVSGFDEPIWTLPELDAFTQHPVDYTD ILPKIAHVTVISAINDNSVPYPYTLTMARHLHSKFVLMPSGHHFTDEGKDKKLPIVFDEL KAMLKND >gi|238617817|gb|GG669604.1| GENE 1129 1228557 - 1230626 1366 689 aa, chain - ## HITS:1 COG:APE1199 KEGG:ns NR:ns ## COG: APE1199 COG3379 # Protein_GI_number: 14601246 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Aeropyrum pernix # 383 583 160 353 458 62 27.0 2e-09 MTRNARTNKLIVLGIDGMDARTTHRLVKEGKLPNIKKYLEAGSSRAGQEMLGAHPTITPP CWTTLATGAYPGTHGITDYWRQSPDSLDAVVYNMDSRNCKAEQIWNCTVENNLKTLVWHW PGCSWPASSDNPLLNVVDGTQPGSVNMGVAQMDWEKIIYGSSELDKPRYIPHTEKAAGVG CNITNLQEVVSNQPAKDHSDDEDEMMEIWWGDESRKGGEIRTYVKSLEDTEMMIGAKVAY DIVMTPIKPADDWQHVPEDSLQFTVLISGGQETRYGLITKSHHDSYDTVTLYHTKDGADP FVTIPKDKMVSGIIDNATKKGRTKPSCRSYKLLELSPDGKTLRLWISNALDTTNKMLWQP SALYDEVIAHVGPVPPVSLIGGEDPELVEKVFLPSWDIYCQWQADSIAYLLDNQHFDAVF SHLHNVDCAGHQLWHLAKTLAPWKDTDEKVYQRFIERVYQQTDAYLGRFLHYLDEGYTIL VVSDHGLLVGENVPPILGEYGGLNTQVMEDLGYTTLKTDENGQKIDEVDWEKTTAVQIRS NYVYVNLKGRDKHGIVDPKDKYDLEEKIISDLYNYRDPRTGKRVVGIALRNKDAIILGAS GPECGDIFFTVEEGFNRLHGDGLTTAEGYFETSVSPVFIASGKGIKSQFTTDRVIRQVDV TPTIALLLGTRIPAQCEGAPIYQIFKSEV >gi|238617817|gb|GG669604.1| GENE 1130 1231202 - 1232149 603 315 aa, chain + ## HITS:1 COG:STM2281 KEGG:ns NR:ns ## COG: STM2281 COG0583 # Protein_GI_number: 16765608 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 243 1 239 292 74 23.0 2e-13 MKLEQLYLLNEAVKYASISDAAKNNYMSQSSISHAIISLENELQSKLLTRTCTGVSPTVV GQAVLKQVQTIIKSVQNIQALSKPGRFIDEIKLACIPCLNDWIVPTVLSQLQMADGKASV SVSTEESGRIVREISSRQSDFGIVINHRGSGKVDDLVYEPLFHDQYVLYVGRHSPLFGKE NVTYETLLAQPYIAYKDEFRKENGGLTNLMRSGQQPNVQFRTDSLDAIKSLIANDRYVAF FPQYMSQNDYYLQSKMIRKVRIIDQPLDFEVGSISNKKYPLNDQNKLFLATLKQVVNSRT FMLNQSKEGDSLSVN >gi|238617817|gb|GG669604.1| GENE 1131 1232197 - 1232910 620 237 aa, chain + ## HITS:1 COG:SMb21528 KEGG:ns NR:ns ## COG: SMb21528 COG0600 # Protein_GI_number: 16264715 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Sinorhizobium meliloti # 1 236 39 274 275 177 44.0 1e-44 MWLLVTWHGRISSLIIPAPNAVWTSFIDLLQNGYKGHTLWQHLWASLQRLFIAYFAAVLF AIPLGLVSGYSRKVRAIFEPVITFLRPLPPLGYYTIIILWMGTGNTSKIVLLFLGAFSPI YVSCVAGVSRVKIDYLNRARTLGANQFQVFSHVVLPASLPDIFVGLRNAMSVAYATSVAA EMVAAGSGIGWLVLDASKYLRSDVVFVGIIIMGVTGILLDTILLLLEKKVVFWEGKD >gi|238617817|gb|GG669604.1| GENE 1132 1232927 - 1233967 1012 346 aa, chain + ## HITS:1 COG:YPO0182 KEGG:ns NR:ns ## COG: YPO0182 COG4521 # Protein_GI_number: 16120523 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type taurine transport system, periplasmic component # Organism: Yersinia pestis # 71 328 69 327 353 137 34.0 2e-32 MKKVKGWVGIAIVLTGVLLAGCGQSKADSAKSANKDPQTGQVYPKTVKVGLIEGGPESAI LQKEHYLKGIGTKVKTTSYSTGTDLNNAFVSKDLDVASFGSSPYALGVANGVPYKAVGVP YVESGNIEALAAKKSASIKKVADLKGKKIGVPFATTSHYALLKALALAGLKPSDVTLKDM DGQSIVAAWKRGDIDAAYIWSPALDEIAKTGRILTNDGQLKNKGVIIPEVAVSGNDFSKK YPTLVKRYVQALIKVQNLVKTNPKRAIQDVASWEGIPTANAKSQITENDWLSGNEQADYL GSDGKLADIVKTITDFHKAQKNISQAPTKSTINDAIDGSFLQKALK >gi|238617817|gb|GG669604.1| GENE 1133 1234006 - 1234815 674 269 aa, chain + ## HITS:1 COG:PA2294 KEGG:ns NR:ns ## COG: PA2294 COG1116 # Protein_GI_number: 15597490 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component # Organism: Pseudomonas aeruginosa # 6 265 2 259 284 231 43.0 9e-61 MLEEQTESGQQLISVDQVTLDYGGKGGTSPAIKDVSLDIYPGEFVCVMGPSGCGKSTLLK ILAGFIKPTSGSAQLNGQLIDGIDSQRGVVFQNATLYDWYSVRKNVAFGPNMKHVAKKII DADVKKYLAEVKLTGFADKKVFELSGGMKQRVAIASALINKPEILLMDEPFGALDALTKT QMQNLIRRIWFRSQNTIFFITHDVDEALLLGSRVVVMSKHPGRVIADFPVNFTETILNSQ TDSTRYSKSFLQRRKYILNLISQDEEASF >gi|238617817|gb|GG669604.1| GENE 1134 1234948 - 1235661 492 237 aa, chain - ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 63 233 432 601 605 114 32.0 2e-25 MQKSRGAFMTYSLLGFALVVVLLEVGFLGTGNHRNSEAAHNHIFSTTKVQAKTAKLHLTA REKSVSRNYHLTKLQTRTASKIHLTAIGDSVMVDVKPNIKHVFPHSAVSGSVGRQFYSLP GIVRQLRATGHLARYVVINLGTNGPPTQADINSVLKTVGKERQIFWINTRVPRKWQNTTN HLIKKTAKKHANVHVVNWYKASKGHAGWFASDRVHVDLTGAVYYTHTLAKEISEDLN >gi|238617817|gb|GG669604.1| GENE 1135 1235990 - 1236865 728 291 aa, chain + ## HITS:1 COG:SPCC965.09 KEGG:ns NR:ns ## COG: SPCC965.09 COG0388 # Protein_GI_number: 19076019 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Schizosaccharomyces pombe # 1 265 1 266 272 281 46.0 2e-75 MKIQVASVQFQPQLNRVAFNLRAMAKWVNRIKSEQIDIKLIVFPELSTTGYECGTGFYQL AETVTGQSVQYMQNVAKRYHVYLIFGFAQRDQTNAGTIYNSTMLINDQGQIVGTYQKVHL FDTEQRYFTPGKTYPVFKTKIGTIGMMICYDTFFPEVARILALEHADLLTISTNWERPRI QDWELCVRARALDNIIPIVAANRIGFDKELDFFGHSKIIDPLGTVMSSLDSERPGYLQAT IDYEQTRGLRHGYYSIYQDAHPETYSEKWHLQGNMDSKDPKTAVVKAEDAN >gi|238617817|gb|GG669604.1| GENE 1136 1237048 - 1237488 474 146 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509018|ref|ZP_03939067.1| ## NR: gi|227509018|ref|ZP_03939067.1| hypothetical protein HMPREF0496_1181 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1181 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 146 1 146 146 254 100.0 1e-66 MRSQKLIVLGFLLGGAFLLNPTAKASTYHSGTPKALRGCWYLGKQSYLEYWSRHTGMNNL QYSSAYGGYLRPNPYGLTYVKYKYLGYHTYRLTGWTYSTSQDFRVIDPTSEKYTYNVRLL NSKQLYLCDRNVTYTKYTTTPGWVVD >gi|238617817|gb|GG669604.1| GENE 1137 1238329 - 1238412 59 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTIIKSIAPAKVNKDSFEATALLALLL >gi|238617817|gb|GG669604.1| GENE 1138 1238548 - 1239711 1219 387 aa, chain + ## HITS:1 COG:lin2094 KEGG:ns NR:ns ## COG: lin2094 COG0119 # Protein_GI_number: 16801160 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Listeria innocua # 3 379 2 378 512 468 60.0 1e-131 MTKQIQFFDTTLRDGEQTIGVNFSVEQKVEIAKELERWGVDVIEAGFPVASPEDFEAVQA VSRAVKRTRVTGLARARKGDIDACIKATKDAAHKQVHVFIATSPIHRESKLHMTKDQVIA SIRDSVTYAHQFFDIVEFSPEDATRTEPDFLVDSIETAIHAGATVINIPDTVGYTNPVEF AELFKNLRENVKEFDDITFSVHCHDDLGMAVANSLASIENGATRIEGTINGIGERAGNAA LEEVAAALYVRKDYYNATSNINLKETKRVSDMISDFANMPVPHNKAVVGANAFAHESGIH QDGMLKNPQTYEILTPESVGANKTTLPLGKLSGSHAVMAKLNTIGYDVDRDDMKKIFPIF KRVADDESIVTEDDLKKIMDKVKEAVH >gi|238617817|gb|GG669604.1| GENE 1139 1239711 - 1240790 1124 359 aa, chain + ## HITS:1 COG:SA1863 KEGG:ns NR:ns ## COG: SA1863 COG0473 # Protein_GI_number: 15927633 # Func_class: C Energy production and conversion; E Amino acid transport and metabolism # Function: Isocitrate/isopropylmalate dehydrogenase # Organism: Staphylococcus aureus N315 # 5 346 2 346 348 365 52.0 1e-101 MSHSTAKITVLPGDYIGPEIMSAGLSVLKAVSEGEFDYQIDEQPFGGAGIDQKGDPLPQQ TLESAKASDAVLLAAIGGPKWDNAPKRPEKGLLAIRQELNLFANIRPTAISQAMQKYSPI KQVEPVDFVIVRELTSGIYFGKPREIDDHHAIDTMRYTDEEIRRVAKVAFEMAEKRKQHV TLVDKANVLATSNLWRRIVEDVAADYPTITYDTSYVDAAAMKIISAPEQFDVILTENMFG DILSDESAEITGSLGTIPSMSRGTTGPALYEPIHGSAPDIAGKGIANPLSMINSVALMLR HSFDRPDLADDIADSVDAVIESGNVTPDLGGGSTTDQVTSAIINKIRERRNAYVENDVR >gi|238617817|gb|GG669604.1| GENE 1140 1240768 - 1242141 1092 457 aa, chain + ## HITS:1 COG:lin2096 KEGG:ns NR:ns ## COG: lin2096 COG0065 # Protein_GI_number: 16801162 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase large subunit # Organism: Listeria innocua # 1 457 1 457 462 678 69.0 0 MSKTMFDKIWDKHVITGKTGEPQLIYVDLHLLHEVTSPQAFEGLRENHRKVRRTDKTFAT MDHNVPTVDIFNIKDEIAKKQIDTLQKNADEFGIRLAGMGDKDQGIIHVIGPQLGLTQPG MVIVCGDSHTATHGAFGSIAFGIGTSEVEHVLATQTIWQTKPKTMGIHVHGKLPRGVYAK DIIMGIIARQGVAFGTGYAAEFYGDTISNMGMEERMTLCNMAIEGGAKMGSVHPDQTTFD YVKGRQYAPKNIDKAIDYWKQFTTDSEDAYDRVIDFDVSDLAPYVTWGTNPGMAVPVDRQ FPEIKDDDDQKAYDYVGLKPGEKATDIPIRWAFFGSCTNGRLSDLKIAAAILKGHHIAKG LTAWVVPGSRAIRERAEEIGIDKIFKDAGCEWREPGCSACLGMNPDHVPAGIHCASTSNR NFEGRQGAGSRTHLASPAMVAAAAIHGHFIDLRKEQV >gi|238617817|gb|GG669604.1| GENE 1141 1242142 - 1242726 586 194 aa, chain + ## HITS:1 COG:lin2097 KEGG:ns NR:ns ## COG: lin2097 COG0066 # Protein_GI_number: 16801163 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase small subunit # Organism: Listeria innocua # 1 190 1 190 193 229 58.0 3e-60 MEKINVIKSTSIPIMRDNIDTDQLIPKQFLKNILKTGYGKNLFYDWRYQSPNKPNQDFIL NKPERQGAEILIAGDNFGCGSSREHAVWALKDWGFRVVIAGGYSDIFYMNSTKNGFLAIK LPKDQREILAQAAPDETITVDLPNQTVSYRDNQFPFEIDPLWKHKFVNGLDDIAITMNYE KQIEEYEAEIPDFG >gi|238617817|gb|GG669604.1| GENE 1142 1242760 - 1244070 1066 436 aa, chain + ## HITS:1 COG:ydjE KEGG:ns NR:ns ## COG: ydjE COG0477 # Protein_GI_number: 16129723 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 8 432 1 442 452 219 31.0 1e-56 MIRGQMPMERQISLQGRIDRTKESPLFYEIFALVAGGMFLDAVDVYLASAVATTVLKDNW STLQLNSYFLSSGFLGLFLGSIIAGFIGDLKGRRVAYQINLLMFGGFTFLGAFAPNMGFL IFCRLMSSIGLGSEIVTGYSMINEFAPIHSRGKWCATTSLVANCGAPVTMILCSAIIPRY GWRVMFMVVGIVAAILWYLRRNIPESPRWLMAHDRDDEARAIIEKLEVNGVNDDVDETPK KHEVVHHSLWISLFVATVAASATIICQYTFTSWVPTLLSNRGINISGSLWMSAFMMVGAP VGCAVGAYLVDRIGRKKTIAPAFFMTAIFGFMYGQQSTVGGVLAIGFMLEVCFYILMASV IAVYVAELFPTKFRFRGSGIANGAAKLFTVAMPIVVAWMLKVTSADMIFWAIGGIALFAG IVVWVFGDETNQKDIG >gi|238617817|gb|GG669604.1| GENE 1143 1244368 - 1244655 333 95 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509025|ref|ZP_03939074.1| ## NR: gi|227509025|ref|ZP_03939074.1| hypothetical protein HMPREF0496_1188 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1188 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 95 1 95 95 171 100.0 2e-41 MKKSQLSDRINEAFIAFNREASHHADNTYVARLDNNDAVSVIAIPYGDPHKPYLIPQDFS KLLDDVADKAYAAETGAFSQLKALELEISKQGVEE >gi|238617817|gb|GG669604.1| GENE 1144 1244815 - 1245801 1002 328 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509026|ref|ZP_03939075.1| ## NR: gi|227509026|ref|ZP_03939075.1| hypothetical protein HMPREF0496_1189 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1189 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 328 1 328 328 482 100.0 1e-134 MKHNKLLYFILGTLATTLLGTFGTAHSTQPVQAKTKVQTTQIVKTKPTKYWVKPNVSNKA YAYTAKLGKKLFKLKTHQKVVFTSQYQRKIKVSGKYQTYRYVKGNNLKGWVKSSYLTKAS SPTATTTTTTTPTTTETTTSVTNSSSSSTTTPVKTPVKDPAKSYTPDQGVSWASSNITYA FYPKMNNSEKALWYSAIQEWNSVNVVNLSETSDYNNANIKITNVASNSDGVDAHTVGISY IQRATTRNPAGFYAMKSAVIGILPEQAIKFNFDYAYTQFIAVHEMGHALGLAHSTDENDV MYPNEKDPYTQKITEADINTLKYLYNKQ >gi|238617817|gb|GG669604.1| GENE 1145 1246526 - 1246987 399 153 aa, chain - ## HITS:1 COG:STM4549 KEGG:ns NR:ns ## COG: STM4549 COG2606 # Protein_GI_number: 16767793 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 153 1 152 152 111 41.0 5e-25 MSLIDLKNELSYHQLRDRYIDLPSTGATVNEAAEVLHVDPDAIAKSLVLNVNDQPIVIVL SGNARLDNHHFKEEFHVRPHLLPPDEVQQSTGYPVGGVNPIGLENDLPVYLDTSLRGLLW LYPAAGDEYHALKLSLTELTELSHPVRWVKVSK >gi|238617817|gb|GG669604.1| GENE 1146 1247000 - 1248400 1006 466 aa, chain - ## HITS:1 COG:SPy1654 KEGG:ns NR:ns ## COG: SPy1654 COG1113 # Protein_GI_number: 15675525 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Streptococcus pyogenes M1 GAS # 4 448 10 452 459 430 50.0 1e-120 MAKNEVEVNKDGTIRGLSNLAVQMIAFGGSIGTGLFLGAGSTIHRTGPSILFVYLIIGIF FFLMMRAIGEMMYADPEQHTFVSFIGKYVNPRLGYFAAWSYWLELVLAGMAELTAISTYV KYWFPGTPAWIIQLAFLLILTAVNMAMVSSFGKSETLLSGIKILAIIALIVIGIYLVVTN HRNPAGTQASWGNIFNHFSLFPNGAHQFINAFPMVFFAFQGMEFVGITTAETKQPRKVLP HAVNQIIGRILLFYIGSLIIIMAITPWNTLNPNESPFVQIFKLAGLPAASQIINLVVIAA ACSTLNSAIFSTGRHLYQLAEESPSKGMTFFTKVSKNGIPITSVLFSALMMILAPIISSF NSLGVAFSFIASVSSDIYILVCILTMVAHYRYRHSGDFKLDGFKMPQYRWSNPLTIAFFL AIFASLFFNPSSILPAVGALVWALGFNVLLAYRQKKLDVADSQDSL >gi|238617817|gb|GG669604.1| GENE 1147 1249182 - 1250153 791 323 aa, chain + ## HITS:1 COG:no KEGG:LVIS_0915 NR:ns ## KEGG: LVIS_0915 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 7 303 4 305 321 106 29.0 1e-21 MKKSMVKGALLLALGVTAYMGVSMTGQTASAKRQVKVVKTTKLTGADYHVSGGYLYSSVK LTKRVHSAKNYQRTLFFSNRRVTVRKSNGHQANYQYIVSRNGRIHGWIWTGNLKKVSNMS NTSKKGATTPTSTGSTANDQTNSSSADSASSASSTVTVTVTSPSSTSSTSKKSANPTNAF SLTDYRASFMKYLNQERANRGLQPYIEDPNLDALAQQRSTQLITNFSHFDTQGNAIADES ATQFGVGNFGAECIAQNVWDDDSTSDSVAKNDVHEYIYDDAASNWGHRDILLNTDLKSIG MGATLHEHTDGFMATWTAADFGY >gi|238617817|gb|GG669604.1| GENE 1148 1250250 - 1251632 1225 460 aa, chain - ## HITS:1 COG:L140856 KEGG:ns NR:ns ## COG: L140856 COG0477 # Protein_GI_number: 15673485 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 4 429 2 427 433 318 46.0 2e-86 MRAKHLSIFFIFVFGALGGLLFGFDTGIISGASSLIENDFSLNIEQTGFITSSVLIGSSI GALSIGTLSDRFGRKRLLLVASILFLLGSGLSMTAVGFASMVTARIILGFAVGSASALTP AYLAELADAPHRGSLGTMFQLMITAGILLAYVSNLGFLHHNLLGIRDWRWMLGSALIPAA ILFIGSLILPESPRYLVEKGNVDEARDVLHELRKNTNEDPDKELTDIQKVANQPRGGWKE LVTFARPAVIVAIGLMLLQQLVGINSVIYFLPQVFIKGFGFAEGNAIWISVGIGVVNFLC TLLAYQIMDKFNRRTILLFGSIVMAVSIGTLSVLNFTLTVQAAAVPTMILIAIYIFGFAV SWGPICWLMLGEIFPLNVRGVGNSIGSAANWIGNFIVSQFFLVLLSMFHNNVGGPFAVFT FFAVLSIFFVIYMVPETRGKTLEDIEMEMRQKAALKKSAN >gi|238617817|gb|GG669604.1| GENE 1149 1252450 - 1253199 755 249 aa, chain + ## HITS:1 COG:no KEGG:LVIS_0439 NR:ns ## KEGG: LVIS_0439 # Name: not_defined # Def: sugar phosphate isomerase/epimerase # Organism: L.brevis # Pathway: not_defined # 1 245 1 245 249 291 61.0 1e-77 MTLILNTWIFEQDVKNGTPQAELVDRTAKLGADGIEVRREYFTDLETETAAVGERAKANG LMVTYSVPDELFFEDGQFNPKLTTYFDEAKAMGVSKIKFNTGRFDRYQGNLKLDLSRLPL NEIEMNVENDQTEASGNVAPIKAFLEATGKVAFNQIGYVYDLGNWAFTGNDAIQSAKALA AYTNYIHLKNTVSDHGELKTSADLNTGIYDWKRILNELPNDVPIALEFPMATDEKIAAQM AILKAGAEG >gi|238617817|gb|GG669604.1| GENE 1150 1253202 - 1254491 1121 429 aa, chain + ## HITS:1 COG:no KEGG:LVIS_0440 NR:ns ## KEGG: LVIS_0440 # Name: not_defined # Def: H+/gluconate symporter related permease # Organism: L.brevis # Pathway: not_defined # 1 429 1 429 429 576 79.0 1e-163 MVSTISAILLLMTFAIFIVYIVKGGNLMIGFFVMAIVWSIVGMVPADQVIQKVFAEPALN YAPTIIYIVFGSWFGRVLVDSGIAPAISEQTNKVGKKHPFLAAILVLLVTAFIFVSAYGV GSVIAIGVILLPIMLSVGIPRDLALSAFTMAIGAPMYLNVVLYNQIKAFFPTAVYGGKYL VFGWAATAVQLAAVIIFLFFNRKRFDPTKAQENLEIIGAEDNTASIVKVPKIAFIVPVIP VLMNMLFSWDAIPALILATLIAMLFTGKFKGYQKFVDFLNSTIQQSISDIAGLVMFLMAL IMFSGAAQMDAGRFKPIFAAILPHNHLILAVAIGILAPLALFRGPLHVWGAGAATAAVLS GTGLFNDAFLLPLLYVPSIMAVSTDLTQSWNVWGLKYMKVTSTAFLKNGVFLMWVVSIIN EVLVYYFFG >gi|238617817|gb|GG669604.1| GENE 1151 1254540 - 1255499 925 319 aa, chain + ## HITS:1 COG:L0021 KEGG:ns NR:ns ## COG: L0021 COG0524 # Protein_GI_number: 15673609 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Lactococcus lactis # 1 314 1 315 316 335 53.0 9e-92 MSELITIGEPIVTFASKQPDVSLIDATEFTKIMGGAELNVAIGATRLGHSTDYISRVGNE PFGDYVIKTILSHGVGTKYISRDPKYWTGHQLKELVTKGDPQTYNYRKGSAAAHLSKDVI EKVDLNGVKMAHMSGIFPAISEMAEETFRTLLERLIQKEITITFDPNLRPALWSSREKMI RTINELAGSADIVLPGVEEGKILLGTDDPEKIADFYLKGQRTKAVIVKVGSAGAFVKTAE GERYDVPGFKVKQVIDTVGAGDGFALGVITALLEGLNLRSAVVRGNAVGALQVQTYGDND GYPDQKQLKAFYQKEGVTE >gi|238617817|gb|GG669604.1| GENE 1152 1255500 - 1256123 671 207 aa, chain + ## HITS:1 COG:CAC0396 KEGG:ns NR:ns ## COG: CAC0396 COG0269 # Protein_GI_number: 15893687 # Func_class: G Carbohydrate transport and metabolism # Function: 3-hexulose-6-phosphate synthase and related proteins # Organism: Clostridium acetobutylicum # 1 207 1 205 208 117 36.0 1e-26 MKLQVAIDRVSLDYALDLAAKLDQFVDIVEFGTSLVKDYGLVEIGKRNPDLSHAQLLLDL KTFDEGPYEFEKGFDAKGDILTVMGAASTDTLKGVYDVTRKRQGEMFIDLMETSDEKTTQ IVDFENAVYGIHHSHDAAIGFDAVSTVADFHKKFPAVKRISVAGGIDLETAKKLAEQGIA ESVIVGSKIIKTDDPVASAKQFMEVIK >gi|238617817|gb|GG669604.1| GENE 1153 1256120 - 1256662 598 180 aa, chain + ## HITS:1 COG:CAC0397 KEGG:ns NR:ns ## COG: CAC0397 COG0794 # Protein_GI_number: 15893688 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Clostridium acetobutylicum # 1 180 1 182 182 181 53.0 6e-46 MSLVEQVMGEVNQVMGMIDEQQLKDAEGVIQKDKRIFVLGAGRSGLMAKGFAMRLMHIGY TVYAIGETITPSIQAGDVLVAVSGSGKTSSILELTEKAKNDGVKVVAVTSHSDSPLGKLG DVTIVVPGATKAGDGVKSIQLLSTLFDQSVHITLDVLCLMLSRRDHVSNDTAKATHSNLE >gi|238617817|gb|GG669604.1| GENE 1154 1256816 - 1257802 730 328 aa, chain + ## HITS:1 COG:CAC0393 KEGG:ns NR:ns ## COG: CAC0393 COG1609 # Protein_GI_number: 15893684 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 1 315 1 318 344 142 28.0 6e-34 MANNGRKSANIKDVAALAGVSVATISRYLNGELDRMSKKTAENVRNAIEKLNYVPNSVAR QMKTRSSKMIAVIVSNVDDYFSTELFKGISSILESSGYIGVLFDADSDDDREQRLLKTIG SQLFDGVIMQPANNPQTITEALRRSMPIVTVDREIDDSPWPQVVINNYEVARSVSHHFVQ EGYSRVAVLTSEIKKARTRQERYRGITAEFKHVDVLEISEVAHNHQTTYQQLLHLIQKND EKTVIFSLKERWFLEFVPQLVFDRVIDNKRVTATGFADTDYARRLEPRLKLISQNPYFMG ASSAEVMLNQLQDKSQKAERIVIRAKFE >gi|238617817|gb|GG669604.1| GENE 1155 1258171 - 1258473 182 100 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509037|ref|ZP_03939086.1| ## NR: gi|227509037|ref|ZP_03939086.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus buchneri ATCC 11577] conserved hypothetical protein [Lactobacillus hilgardii ATCC 8290] conserved hypothetical protein [Lactobacillus buchneri ATCC 11577] conserved hypothetical protein [Lactobacillus hilgardii ATCC 8290] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 100 1 100 100 151 100.0 1e-35 MTLFALLLDVICLGGYYFQLYSGGPIIYLLGLFLQAIITIVLLWMTLTYKGKRYRNPWLF GWFSATIRFGIVLMSLGVNAVMTFMYVVNYFGINDLIFNH >gi|238617817|gb|GG669604.1| GENE 1156 1258584 - 1259216 417 210 aa, chain + ## HITS:1 COG:BH0360 KEGG:ns NR:ns ## COG: BH0360 COG3338 # Protein_GI_number: 15612923 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Bacillus halodurans # 15 203 74 267 275 106 34.0 3e-23 MLDYNAQSQWSNGFGGQQSPIDLKGSEAVQHNGSLLFEIKNSYDLTSEIDDQTTIRVLGD GSATIFDRLFDFVQVHFHVPAEHLVDGEAKPFEIHLVHQNKIGQLVVVALLVSEGKGDAT LQQIIDQFQVGQTKSVNIQLGDWVPARPNGFHYLGSLTTPPLTEGVEWLVIANPNVSISA DQLAWFKAHFQPNNRETQDLNGRLIGSYLK >gi|238617817|gb|GG669604.1| GENE 1157 1259249 - 1259719 346 156 aa, chain + ## HITS:1 COG:L197116 KEGG:ns NR:ns ## COG: L197116 COG3600 # Protein_GI_number: 15673914 # Func_class: S Function unknown # Function: Uncharacterized phage-associated protein # Organism: Lactococcus lactis # 2 147 149 298 306 92 34.0 2e-19 MISISKLISWFIIVNMDKQRQYPGTEKLTQMKLMFLLYYVQGTFLALYGQKAFSNDVVAW KYGPAIAVVHQRFRGKRFVTGTVTNEDDVNYRDVNQDDRLLKIVFEVQETFGNKTAAELS RQTMRERPWKVTPQSGVIDPEVLADYFKKHIVEMDD >gi|238617817|gb|GG669604.1| GENE 1158 1259816 - 1260061 193 81 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0113 NR:ns ## KEGG: Lbuc_0113 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 81 1 81 81 104 65.0 9e-22 MTKLKTAAIMIAATFTFGGIAVVQPPVQSNARTTYVWIAPNHGKKYHYSKNCRGLNNAGR KVHVTLHWAKSHHYRLCGWEK >gi|238617817|gb|GG669604.1| GENE 1159 1260399 - 1260713 168 104 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509041|ref|ZP_03939090.1| ## NR: gi|227509041|ref|ZP_03939090.1| hypothetical protein HMPREF0496_1204 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1204 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 104 21 124 124 198 100.0 1e-49 MVADTSANAIPTTTSGLSIGRYRTKSFHGYRIEARNYVRYNSEYNVKQHAILSKYRPTQK SKVIFKYGTKIVPTRHPWIWHHGKNDNLMTMYQYSKGAWHKMEI >gi|238617817|gb|GG669604.1| GENE 1160 1260948 - 1261841 424 297 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0576 NR:ns ## KEGG: Lbuc_0576 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 4 295 1 287 288 392 74.0 1e-108 MFYIRKFIYFLLFTVLIVSGASYQQPTQTAEASSYVYVTRTGKHYFYHKHNRGLNNAKKI YRVKLSTAKKRGLTLAKTDYKPSSTRKKTVKTTRKKAKAAGKKAQKVSKRQIKIGRQIII INQNRPKFSKATLTRKHGAWQRYGRLDFLNRATTANAMLNKRLMPTEQRAPLYVDPTGWH NKKISSGWLYNRCHLIGYQLTGQNNNLRNLITGTRSLNTPCMERYENQVAAYLRSSRKHY IRYQVRPVFKSNNLLANGVQMQGKSIGSNRVRFNIYIRNIQAGVKLNYKTGTSQVTN >gi|238617817|gb|GG669604.1| GENE 1161 1262056 - 1262295 286 79 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509043|ref|ZP_03939092.1| ## NR: gi|227509043|ref|ZP_03939092.1| hypothetical protein HMPREF0496_1206 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1206 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 79 1 79 79 135 100.0 1e-30 MDKIAEATVLDMAVKAMRRGRMVRLSFGDRQEHQVTDIEPVVGYITGIKDDKLTFTNMLN QSRFVDVSTLDTITFVMNS >gi|238617817|gb|GG669604.1| GENE 1162 1262513 - 1264258 1332 581 aa, chain + ## HITS:1 COG:no KEGG:LVIS_2083 NR:ns ## KEGG: LVIS_2083 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 1 225 1 221 459 162 40.0 4e-38 MKKEIKRGGLWIGACAVTFASMLLLVIQPVQGSKVKVTSNKALTTKVSKRNVEPTGKAGL YTKPSALKGDKLVLSRKTMKKMDHSENANHYLRAYRVAKTNQNQVYYKVVSFDGKHRGWV YGGQKTNRFSGGLHAVKTYRELALTAEEKTATYQFTNPGTGHVTWRAPYGTTYKPTKVVK SLAPYVNDTLTVKSVVEREKGDEIYYYIASQEHPGINGWIQGKAVEPAFDTSSNQPGLTL PEQSASGQKPTAPTSTPSPDTSSPEKPGGTLNYSGTFSSTDAKVYKNAFSQETDQSVISK VQKSYKEQVIKGLSEPFNYDQNMSLVEIATKLGHGKRFTAEGGRNYAVIVNPTGSSLVTL IPYSQIKWINAKAAVSGLDSGILGMLINDELKAQIQSAANLYYKVNYLGSLVIMSPMSDS TVKRLLGDGKQLSINVEQFFEELPITVKFDIGVKIDRDDNGITAVNVDLKLDPESLKVPD PENPAKCQLNVDVKQLGLGTFPSIAAQAAIRVFYPIRYPYYNKIDQSMSPDKIKRVLGNG QTIQVNQSGIKANLTMAVDVSQENGVSKNVTVKVVATKLTE >gi|238617817|gb|GG669604.1| GENE 1163 1264517 - 1265389 729 290 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509045|ref|ZP_03939094.1| ## NR: gi|227509045|ref|ZP_03939094.1| hypothetical protein HMPREF0496_1208 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1208 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 290 1 290 290 587 100.0 1e-166 MSQSFSNHKFTNLPDNIVDIATGILERSTEFQQRMTPPRKQGDERDKALAIPGNVIFYVP TLHMDDAQYQGHGLLPHLVKKSYLDIDVGVVPVKQEVTVRHAKMASHFTYEDAHIDLFNR VHHPAYIIGGYDLNGNRLRGVTIPLPDVKTEKVFVRIDEHWKIATDNNGYVTSVFHRYFL IDGIGAERKSVPKIATINSDLSMLSPNWGRQLKHSLAETQSFHSLLDTPQYYEHLGMFTN YQGSIQFGTGLDAQSGSHEQVELQKYNAKVLGNQENWHIVPHLTLKKLTE >gi|238617817|gb|GG669604.1| GENE 1164 1265881 - 1267773 2076 630 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0569 NR:ns ## KEGG: Lbuc_0569 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 388 1 393 395 370 58.0 1e-100 MRFDLKKSLFVSMAALGLFAATATINANQADAKTYARVTSNSKMSSDPTTRNISFTGGNA IYTKAGTLRGARLVASTATLSTLANSNSSSDNFRAYRVATTNRGSVYYKVVSFDQQTRGW IYGGKSTANFGGGTKQFTTFSTNNLSDAQQNSLYKIASPGIANDGKTVTYKQPAWTQYKV GRQVLDSTPYANATFKIIQVGTRTREGDQWVQVQATDNQYSQANGWILYSGLTLTQTPVA DNAIRINLVDSSNNNNVVKSFDYTKTGAQKGTRLGTQNGANWTLAASDQTQLQNQINTNL SGTGYYVGALNQTQINALGAATFGGSVNIAVTKQTAIADNAVRINMVTPNGTFLRSVDYP KANATKGNYLGYWNGNVWALSNDDITNINGIVNNALTGTGYFLTNGQLTSAQQQAIAAGR FGDNVTITVTNTQPVTTTTTVQPMLNGYLGSLTARQMNSISGPTVNTDIAIPGFAGGSGS DKTIVSASDLYQWSKSSDTTLKQKLADAMTAANKLTSDQLNNATTGINPQAKQAANLVYL QPNNMRINLGASGAYYSGDTALAQAKSNNLGTIYSPIYPIITQDTTAGATQAKLTWGRLT YTAQSANPGLSGGTVNVYYNADNGTTVTNP >gi|238617817|gb|GG669604.1| GENE 1165 1267965 - 1269641 1196 558 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0577 NR:ns ## KEGG: Lbuc_0577 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 551 1 512 521 300 39.0 2e-79 MKNNLKRSLLISAAALGFFAVAGVSNGQTASAKTYAKVKSNQTLSMNPSDRNVNFTGSSA LYTKASTLKGAKLVASASQLSSFANSNSSDHNVRAYRIAKTNRGSIYYKVVTFNGLYRGW IYGGKSNADFGGGLKGYNTLTPAALTTDQKNGTFKIANPGNANDGKTVTYKEPSWTQYKV GRQILDSSAYAGKTFTIDQAANRTREGDLWVHITATDSGNSGANGWILYSGLTAVSSPSS SSSSSSSTTPTTTAPTNPADKILRITFVDPNGNTIKSINYTNNSAVGGNTLGTANGSTWT LNTSDVTSIQDQAAKALAGTGYTLANNTLTDDQKTSLAQAKFGSTVQLKTVAGNSSSTAT KQASSVIVPSAVNQSTTYNWWDILHLFQINDSSVNAMTAFSDQYDNTKVDFPHVWNQDQW LPTSSDQKYSAQDLANMKPDDQAYKNIIASFSGVAFNLDANSLNLAFRQAVAGKYIAPSN FSISGNQGATFTNGDALSAVYANNALLTLKSPMYPQFVQKNGKWTIEWDQVSYTAQSAGN GTYGNPVQVMYSYNLAVK >gi|238617817|gb|GG669604.1| GENE 1166 1270192 - 1271829 1264 545 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0578 NR:ns ## KEGG: Lbuc_0578 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 545 1 527 527 310 48.0 1e-82 MTNNLKKSLFVGLAALSFAAVAGTATTQASAKTYAKITSNKALSSDVNTRNVNWTGSSAL YTKAGTLKGARVVAGKSALSTAAASKDSKSNVRAYRVATTNRGSVYYKVVSYDGQYRGWI YGGKSATSFGGGVESYATTKPVTLDSSAANATYTLAQPGSDAANLAYEAPAWTQYKVGRA KVDGKVITTTAPYSGAQYKIVSAVTNSRDGQTWYQLSAAPASSASASSANSSAASSASTS SANSSAASSASSSASASADQLNTKWVQASAVKATSASSSATNDFDANKSVKIQYRDVKTG KTLDKTNTWTTASSDTKQGQTVSDSNLNSAGYKLGDYIFNTKAPAGYTWTNANAKSFSDL TIAPAVSSATFGSTLTVDVTPTAATTKVSFYTQDKDGNLVALKASDFSGNAFPALTDADQ KAALPDVNSNKTTFATADYFGEGKAFENVLNTKVATLVPAKKGELTDPYTNQVTGLPKVG FFGQALNNGSQRYFYVYSAQDTLNNNNPQQFQGATVKVVLQKFTTNLPDTTPTKDANANT NYIAQ >gi|238617817|gb|GG669604.1| GENE 1167 1272552 - 1274219 1183 555 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0580 NR:ns ## KEGG: Lbuc_0580 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 555 1 538 538 264 43.0 8e-69 MTNNFKKSLFVGLAALSFVAAAGTANTQASAKSYAKVTSNKALTSDATTRNVNWTGSSAL YTKAGTLKGAKVVATTTTLKNLSSSTSSQQNVRAYRVATTNRGSVYYKVVTFNGNYRGWI YGGKSTSSFAGGLTSYATTTTASSAPSSSATFTLANPGSASTSSLAYNDPAWSQYKVGRA TVDGKVVSDTSVYSGAQFTVTKAAYTTREGSDALWYQISAAPASSASTSSSTSSASSSAS SSSASASSAAQSAAAQLNGKWVKASDLKATSASSSSSSSAAFDADTSVKVQYRNTSTGNL VSDASSTWTTSSSNSKQGESVYNSGSSFKDSTGRDLGAYIVNAGAPSGYAFTTTDGAAAS SNGTTTNLNVSPTLSNATFGTTITVDVVPVAAGTKVSYNYVNSDGGLTSLSASDFALGYP GLTTSQQSADLPSGGSTTGSFKLSDYFASSGKFETALDNSNTKVTLDNKNLYTDTSSGQQ VSLLGQSTGFFGSNVPGSDNWRYFYVYDATSTASNNASSLTNGSTVKVVLHRYVTQVSVN SKDTSINANTNYIAK >gi|238617817|gb|GG669604.1| GENE 1168 1274618 - 1275124 564 168 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0578 NR:ns ## KEGG: Lbuc_0578 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 127 1 126 527 115 59.0 5e-25 MNKNLHKTLFIGLAALGLFAAAGFSSAQTANAKSKAVKVTRDYAASAKGSDRNVVPTGQY AIYTKPGTVKGARLVASKTTLGALANSENSKDYFRAYRVARTNRGSYYAKVVSFDYQHRG WIYVGKSNPDSDWSSVGYGLKYTETTKEAAMPDTRTVQLTNPGVILAS >gi|238617817|gb|GG669604.1| GENE 1169 1275271 - 1275711 435 146 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509052|ref|ZP_03939101.1| ## NR: gi|227509052|ref|ZP_03939101.1| possible surface layer protein SlpC [Lactobacillus brevis subsp. gravesensis ATCC 27305] possible surface layer protein SlpC [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 146 37 182 182 241 100.0 2e-62 MIREGTPYYYVVNDNDPQIHGWIYAGAVIEQVPTPTVSNDKIVYAKIIDADSGLVVADQT LTNTRADLTNAPAFAATELGNGSTDEAKLGAYAPGYVYDTLSAADKSANYSAIAGATYGS TVTVKARLASTALPFSTLTDANLTSK >gi|238617817|gb|GG669604.1| GENE 1170 1276519 - 1277505 784 328 aa, chain + ## HITS:1 COG:no KEGG:LVIS_1974 NR:ns ## KEGG: LVIS_1974 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 1 318 99 407 413 204 42.0 4e-51 MKVVTFDKAYRGWIYVGKTDPRSNYQSVAGGLKYTDTTTDVTSTLTDAQKKATYQLNNAG TSFEAQTFKEPAYTQYKIGRNTTDTTNYKNDTFTVTKAVKRNREGDTWYYVNDAKNPSVN GYVLSTSLREATGSSSSSSTPTTPTVSVGTSQTTIDSTFNIEGYSQATGGKQVAHAQWTI PLWNGNVNWNNAVNKFNRDRTVMGNKNDVIPTDTLKTALKNNGFNQVYMKITPTILPRLA GGWLDNVDSLTGVYMKFNLDTDSIPSNAHYGDTLRLGYTVDDSALYTKAGGSTKNENSSA NADGYIGMTIYRQWVKTILDMYVVNPYL >gi|238617817|gb|GG669604.1| GENE 1171 1277749 - 1279614 1509 621 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0802 NR:ns ## KEGG: Lbuc_0802 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 18 233 16 235 237 162 48.0 6e-38 MNNKFSKAALLSAALFGLGFAAVSANSNTASAKSYAKVKSNRAYTTNYTERNYLPSGSTA LYTKAGTLKGARKVASASTLNALANKSDKGQSYFRAYRIAKTNRGSYYLKVASFDKTYRG WIYAGKSNPSGKTSVGGMKKVSTFNQGNLTTDISNTTYYFGASSTTYKQPDWTQYKIGRN MDSLSGDYTKDALRVTGVGTKTNGRDNNATYYFVEDSAHPTVNGWIKASDLKSGSGTGTS SSSSSTNIGANQVLVNYVDASTGNSVTTKLLTNNNSSTQTAASYLGTNLSGQAYSNIPTG YSAPGDSTQYGTSNTSALAAASYGKQVNYYVIATSSDNLFSTSPKYTSKANNRTYSGLPG DPVSKNAFTSPQGVQFSSLLSNLAKSSYTSGNGGQRTTFTSTDVFNAVQGAKMDTIYYLA YCDPMSNILDGTKQAILTASSTGTPSVSGLFGTSSSSSTSDTTDQLSAILGASGIDSTGI LSGLGNIIGSGLDGIANSLFGGRICYRIVQLTTSQDAIKTANGDSIKMGTQVTIPYTATA SKVVTQDAITGYQNQLDVGFTKAGTDATDQGNAFNDKTFQSSTSALSGLLTDGSGTTSTT SSSALSSDSSLSNLLSGLFGN >gi|238617817|gb|GG669604.1| GENE 1172 1279737 - 1280954 978 405 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0582 NR:ns ## KEGG: Lbuc_0582 # Name: not_defined # Def: G-D-S-L family lipolytic protein # Organism: L.buchneri # Pathway: not_defined # 54 374 48 367 396 413 66.0 1e-114 MKNKRVIVVAIATLLGMSTTITTQAASKTATPTKTTAPATKSGQSSTSSSKTASSSSTKP IPAATLVSSTTVDEELPYHIDKGYVYTSSKLNKQAGPAKDFSKVTWYTEKKAVIDRSAQG SGNSVWYYVKSGSGAQSGWIWQGNLEPISEGTFDIAMKNSDYFKNQNIICLGDSITKGYD GYETLDNMGYPNWLNRYLDTTVLNAGYNGAFLCDGGEQETTGDLTPTVNSHNFKNYDVAT IAYGTNDYGHVSNSISDIQTTLRQNIKKMKSDNKKLIIYGILPTTRYDSNTNSDNIIGKG GFTMNDLRDAEAEVYKEFNIPYLDWRKDTTQLITDSNHEYRLYDERLHPSAKTYQLMGRE IAQFMINNYPKDKIKTTKKTAKTTTKKATTPTTVTKKVAKTTTTK >gi|238617817|gb|GG669604.1| GENE 1173 1281180 - 1282304 970 374 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0583 NR:ns ## KEGG: Lbuc_0583 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 79 374 42 357 357 89 29.0 2e-16 MNKKFKFRWSLMASSIMLALFGFGVGGNAEADSANVSTPAQSQVTAVNPSSADSNDQSSL HTTGDNSQWALQSSSQYSESVEEAASSDGTQSSSSAVTGWNSVGSSSAADSSDSTSSSSS SSNGGTTTTYDNANSNNVDPNSDSSSSASSSSADANSSSSEPMLGLGDKGSAGAGSGADK VVKKIIDKVVPGGGLDNTKPNVPANSSSSATAGQQANTATGATDSSRVSDTQQSDTNGQG NAYAANSAVAAQAKRQTAIEKPSANDAMTHNSFANRVSKSDSANAQKNTTKLVSFNTFSN LFYKQALNNKKNPGKFTTSKGKKVTITTPVSSVKYTDHDVNGIVETLPVIITLSIIGIVA LSFIIFDPLRFIFR >gi|238617817|gb|GG669604.1| GENE 1174 1283544 - 1284383 794 279 aa, chain + ## HITS:1 COG:BH1530 KEGG:ns NR:ns ## COG: BH1530 COG1015 # Protein_GI_number: 15614093 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Bacillus halodurans # 183 277 300 393 393 73 41.0 5e-13 MDFQRVIVIDLASLGIGEASDANRYHSIGTDTLGHVAIRVGNRLKLPTLGRLGLGNIRFG NPVNGLPPVDQPLGFYGKIHLEGLSNSPEGGIREMLDYQDGIRVTSVIDPIVKYSDDYAR SIMITDYKSYISNQNLADIVAVNKDSLAFQTLHHEVISPVKGLIYMSVQGLPRAAENGSV DQYLEILRETDQHIAQVINEMSRTDLLIITATFANDMTAAVSPTREYLPLIAYTPSNEDG RALGIRHSLADIGATIAEAFSLSYSKESVGHSFLGELLS >gi|238617817|gb|GG669604.1| GENE 1175 1284514 - 1285794 1161 426 aa, chain + ## HITS:1 COG:SA0600 KEGG:ns NR:ns ## COG: SA0600 COG1972 # Protein_GI_number: 15926322 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside permease # Organism: Staphylococcus aureus N315 # 5 426 2 409 409 366 50.0 1e-101 MSLTYLLVNILGVIVYLGIAILFSKDRKAINWRSVLVVLVINLVIAFVLTEFKWGRDGVK AAADGFNWLVQVSYKGIAFALPNWVTPDFGGTAKSMNFVTSALLPILMIVPLFDTLTYIG VLPWIIKWVGRGLSFITGAPKFESFFAVEMMFLGNTEALAVSSLQLKQMSAKRNLTLALM SMSCVTASIIGAYTQMVPGQYVLTAIPLNVLNALIITSILNPVKVTPEEDTIAKMGGSGA ASEAAEEAGEVSADGKREPYFSFLGDSILGAGRLILIIAANVIAFVALAALIDKILALFN PWLSLEHILGIIMFPFAWLMGLDVDHAFQFAQFMGMKLVTNEFVVMGKIAGTINNLSIFP AHYQAQLTVFITSFANFSTTGMIIGAFKGLVDKKKNDLISKNVGIMLLSGILVSLMSAGI VGLFVW >gi|238617817|gb|GG669604.1| GENE 1176 1285825 - 1286511 570 228 aa, chain + ## HITS:1 COG:BH2030 KEGG:ns NR:ns ## COG: BH2030 COG2252 # Protein_GI_number: 15614593 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus halodurans # 26 221 19 214 432 186 51.0 4e-47 MDKLQRAEAVANKLRLREAIRDKNLIKREIIAGVTGFFAISYIIIVNPMILKDAGIPTDL SVFATIISSLIGCLIMGFWANAPVILTPGMGVNAFFTYTVVVSMGLSWQEALAISMVASV IYVLIAFTKLSQVLADGIPDTLKAGITAGIGLFLVEIGLEKAQLIQAGKSSILALGDLTQ PATLLAMFGLLLTLFLYIRNVTGGFFIGIFVTSLLGILFGIRIRHRPL >gi|238617817|gb|GG669604.1| GENE 1177 1286631 - 1287137 440 168 aa, chain + ## HITS:1 COG:BH2030 KEGG:ns NR:ns ## COG: BH2030 COG2252 # Protein_GI_number: 15614593 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus halodurans # 11 163 276 428 432 146 51.0 1e-35 MGLLEGIMPNPKKFKKAFQASSITSFLSGALGTSPTVAAAESASAIESGGRTGITAIVAG LMFAVSMFFIPLLSFVPQAAIAPVIIITGALMMNQLSRINMFDFSDWFPAFLIVVLIPFT TSISTGLAFGFVAYPILKIAAGRAKELTVATYVLGGLFLCDLVLSALL >gi|238617817|gb|GG669604.1| GENE 1178 1287169 - 1288086 1127 305 aa, chain + ## HITS:1 COG:STM0051 KEGG:ns NR:ns ## COG: STM0051 COG1957 # Protein_GI_number: 16763441 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Salmonella typhimurium LT2 # 2 294 4 297 306 252 46.0 7e-67 MTIKIVMDTDPGIDDAAALTMALNDPQIEVKLITSVAGNVTVDKTTKNAQKIVRFFNKDV PVAAGAKQPLIKEFEDAARIHGESGMPGYDFPEDLPKPLDKSAVEALHDTIMSSDEKITL VPTGSYTNIGLLFSEYPEVKDHIERIVAMGGSLGKGNMTSAAEFNVFTDPDAAKIMYQSG IPITMVGLDITMKALITPASLSKLETMNETGKMLHDIIIHDGDNSDEGIAMHDVNTIFYL LHPEAIKTQPMWVDIVTDGPAIGETVGDIRGAYHDGKTNADVCVDIDAQAFNDWFLDEVA AITKP >gi|238617817|gb|GG669604.1| GENE 1179 1288273 - 1289571 1045 432 aa, chain + ## HITS:1 COG:FN0733 KEGG:ns NR:ns ## COG: FN0733 COG2195 # Protein_GI_number: 19704068 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 12 414 6 407 412 394 46.0 1e-109 MKWVSYLSEFDHDLIESLFIKYAKVNTRSNPNSPTVPTTPGQVELAQMIVEDLKKLGIKK VTYDTDSGYTLAELPGNSEKELSPIGFIAHLDTADYNAENISPQVHADYSGEDIVLNRKK NMILSPKQFPNLKKFIGQRLITTDGTTLLGADDKAGIAAILGALDDLLKHPEIEHGPVEV AFGPDEEIGRGSKRFPAKAFGAKFAYTMDNGQPGQIEPETFTASQAEISIKGTAVHPGDA YGLMVNAVSLANEILSALPKDDVPEKSRGHQGFFLVTDFNATISEAHLTIIMRDFDADKF HEKERLLEETVQQINDRFDVPRVALKIDEQYQNIGDAIQKYPYVVNLVLDTYKRLGINPR ITPFRGGTDGNAITAKGIPTPNLFNGGDNFHGPYEYITTEAMADVSRIIVEIIREHVRQY GHENQKPVTFSD >gi|238617817|gb|GG669604.1| GENE 1180 1289829 - 1290566 777 245 aa, chain + ## HITS:1 COG:SA2499 KEGG:ns NR:ns ## COG: SA2499 COG0357 # Protein_GI_number: 15928295 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Staphylococcus aureus N315 # 1 240 1 236 239 287 59.0 2e-77 MNIDQFISALLAQNIQVTDDQLGQFDAYFKLLVATNEHVNLTTITEKSEVYLKHFYDSIT PAFFVSQIREQPVSICDVGAGAGFPSIPLKILFPQLKITIVDSLNKRIHFLTELVQQLHL KDVTLVHARAEEFGNKKSASRQSFDIVTARAVARLSVLSELCLPLVKVGGQMIAMKAAKA EDELEDAKQAISLLGGQVKHDFDFSLPILDEKRHIIIIEKTKDTPKKYPRKPGTPNREPI GKVNK >gi|238617817|gb|GG669604.1| GENE 1181 1290578 - 1291345 821 255 aa, chain + ## HITS:1 COG:lin2923 KEGG:ns NR:ns ## COG: lin2923 COG1192 # Protein_GI_number: 16801982 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Listeria innocua # 1 254 1 253 253 343 68.0 2e-94 MSYVIALANQKGGVGKTTTAVNLGAGLASLGKKILLVDADAQGNATSGVGISKADIGKDI YDVLVNEESMQEAIVHTAHEGLDIVPATIQLSGAEIELTPQMARETRLKAALDDVRDQYD YVLIDCPPSLGLITINAFTASDSILIPVQSEYYALEGLSQLLNTIQLVRKHFNPDLKIEG VLLTMFDARTNLGVQVNQEVRKYFKNEVYETVIPRNVRLSEAPSYGLPIMDYDPKSKGAD KYMKLAKEVLANHGE >gi|238617817|gb|GG669604.1| GENE 1182 1291335 - 1292219 844 294 aa, chain + ## HITS:1 COG:lin2922 KEGG:ns NR:ns ## COG: lin2922 COG1475 # Protein_GI_number: 16801981 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 9 294 4 281 283 260 53.0 3e-69 MVNKKKPTGLGKGIEALFQDNTVDTSKENVIDIKVSEIKPNPYQPRHRFDQKALEDLALS IKNSGVFQPIIVRQPDPEVESYELLTGERRLRASKIAQQKMIPAIVRDVNEEQMMEIAVL ENLQREDLTTLEEAEAYNMLMTRLDLTQAQVAQKLGKSRPYIANYLRILGLPTEVKEMLE DHKLSMGQARTLLSVNNKQELIKLARKSVTDSMTVRQLEQAAAKINGKTGNRKKRVQRKS PFVRASEGQLQEKFGTPVSIVNSSRKKGKGKIEIEYVSTEDLNRILEMLDVNLD >gi|238617817|gb|GG669604.1| GENE 1183 1292310 - 1292504 180 64 aa, chain + ## HITS:1 COG:lin2921 KEGG:ns NR:ns ## COG: lin2921 COG4481 # Protein_GI_number: 16801980 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 60 6 64 65 88 72.0 4e-18 MYGLHDLVEMKKPHPCGTNRWEIIRMGADIKIQCTGCGHIVMMPRREFDRKLKKLLQKAE NSEK >gi|238617817|gb|GG669604.1| GENE 1184 1292529 - 1293629 1368 366 aa, chain + ## HITS:1 COG:SPy0006 KEGG:ns NR:ns ## COG: SPy0006 COG0012 # Protein_GI_number: 15674254 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Streptococcus pyogenes M1 GAS # 1 366 1 371 371 471 68.0 1e-133 MSLTAGIVGLPNVGKSTLFNAITKAGAEMANYPFATIDPNVGMVEVPDKRLDRIQELIPA KKVVPTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITHVSGKID PIDDIETINLELGIADLDAVNKRLGKVQRAAKGSDKEAKAELAVLEKIKPVLEDGGSVRS IAFDEDEEKIVKGLFLLTSKPVLYVANIAEEDMADPEHSKYFPQIADYAAKEGAQAIGVA AAPEEEIAELDDDEKAEFLEAEGVEEPGLNRLIRASYKLLGLETFFTAGGKETRAWTYKK GTKAPQAAGIIHSDFERGFIRAEIMAFADLDKYETPAAVKEAGKLRLEGKDYVMQDGDIV EFRFNV >gi|238617817|gb|GG669604.1| GENE 1185 1293664 - 1294401 712 245 aa, chain + ## HITS:1 COG:SP0184 KEGG:ns NR:ns ## COG: SP0184 COG4858 # Protein_GI_number: 15900121 # Func_class: S Function unknown # Function: Uncharacterized membrane-bound protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 35 240 9 222 234 69 24.0 5e-12 MRVSSSEETKQERNARKRNANVQQDRDRAKKIVHSQFDNIGLTKRNAEYMFKFNQEIAKT KLTPQQQADTIHQMVEELLAGQKSGKTARNMWGTVDQRIQRVLNPPKRKPDIKRDYWPNA FYNMLLFFVIFTFLYGITFFFSKNSARGMMGITGIVLSSIIAGLGIPALTMLIQPGVKHK YPLWLRIIFMVLFFVVWMGVFFFAGLIPAVINPVLNPYVYIALGAVGVVGAFFVKRNFQI TGGLF >gi|238617817|gb|GG669604.1| GENE 1186 1294814 - 1295965 1229 383 aa, chain + ## HITS:1 COG:SP2228_3 KEGG:ns NR:ns ## COG: SP2228_3 COG0516 # Protein_GI_number: 15902032 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Streptococcus pneumoniae TIGR4 # 100 379 2 279 281 398 76.0 1e-110 MVSWDEKFGKKGFTFDDVLLVPAASDVLPNDVDLSVQLADNLKLNVPFLSAGMDTVTESK MAIALAKLGGLGVIHKNLSIESQAGEVAKVKAVKKTTDTPKAAVDKNGSLLVAAAVGVSS DTFDRASALLEAGTDAIVIDTAHGHSAGVLRKIAEIRDHYPDTTLIAGNVATAAGTEALF QAGVDVVKVGIGPGSICTTRVVAGVGVPQLTAVYDAAAVARKWGKPIIADGGIQYSGDIV KALAAGGTAVMLGSMLAGTAEAPGDVYEENGRKYKSYRGMGSVAAMSQQHGSSDRYFQGG VNEANKLVPEGIEGEVEYKGSINDIVFQMVGGLRSGMGYTGSATVKDLNDNAQFVEISNA GLRESHPHDITITKQAPNYEPES >gi|238617817|gb|GG669604.1| GENE 1187 1296130 - 1296513 350 127 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1346 NR:ns ## KEGG: PEPE_1346 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 20 125 5 109 109 122 62.0 3e-27 MMHHLLTISLINESGYVMGDTEKRFLLRLSQQLYEKLAAEATEKNKSVNAYIVSLLEDAE GDTNFEHRQFIGRAIAGKDIYVESGLVMVSGIYYRYLIDDNSHVDKRARYTVIEANGNIL TLRKIKE >gi|238617817|gb|GG669604.1| GENE 1188 1296519 - 1297340 642 273 aa, chain + ## HITS:1 COG:PH0470 KEGG:ns NR:ns ## COG: PH0470 COG0330 # Protein_GI_number: 14590383 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Pyrococcus horikoshii # 5 266 28 287 298 127 31.0 2e-29 MPLGIKIVPQNNQGLVETFGKYRRSVASGFHFYLPIIQKIRTVSLAMEPKALPNYSIITK DNADVSASLTLNYHVTDAVKYQYENTDSVESMAQLVRGHLRDIIGRMDLNEALGSTAKIN QELTIAIGDLTNTYGINVDRINIDELTPSSAIQEAMDKQLTADRERVAAIAKAEGEAKSI ELTTKAKNDALKATAKAEAEATRTRADAERYRIDTVQAGLSSADDKYFQNQSINAFSELA NSPANMVVVPSDKTGDLGQLPIAGKLLKKGADL >gi|238617817|gb|GG669604.1| GENE 1189 1297406 - 1298035 531 209 aa, chain - ## HITS:1 COG:SP0617 KEGG:ns NR:ns ## COG: SP0617 COG5549 # Protein_GI_number: 15900525 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted Zn-dependent protease # Organism: Streptococcus pneumoniae TIGR4 # 34 180 89 239 240 83 38.0 3e-16 MLRKKSLLSLYVLLLTALFTFLPISALADPITPHGTARFESPNATININNNSSSYKVIWM NAIRAWNNTGAFNFELSTSSTAQIIASSNTSIGTGYAGLTKLTINNQGVITQADSTLNPK VMTSVGYLPSQETNVAEHELGHAIGLYHSPIKQSVMFAANRFYTIQPADIASVRNLYAAS LDATASLTQNTLFQDPFVRQVHSHQVKFH >gi|238617817|gb|GG669604.1| GENE 1190 1298339 - 1299109 494 256 aa, chain + ## HITS:1 COG:alr2484 KEGG:ns NR:ns ## COG: alr2484 COG1051 # Protein_GI_number: 17229976 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Nostoc sp. PCC 7120 # 3 251 10 232 248 93 30.0 3e-19 MDSESILEQPYINITNIIWSFDQITSKVNILLVKRSNKPYNGYWALPETFMRTNESADEA ALRLVRAKIGMALSNSHTEQLATFTNRLRTPEQRTLSLAYMTFLPDKPMLKPGYGASDAR WFSMDYTENGYAFSDGELTFSTAQSQTESQYYAKLAKSSLSKAHLAYDHEWILKVACERI KNKLDYQPNILLVLGPQFTLKDARLVYAPFLKMPFELIDNSNFKKSHRHLFTDVGTSMSN RPGRPARVYKLSYLFP >gi|238617817|gb|GG669604.1| GENE 1191 1299223 - 1300650 1176 475 aa, chain + ## HITS:1 COG:CAC1002 KEGG:ns NR:ns ## COG: CAC1002 COG1488 # Protein_GI_number: 15894289 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Clostridium acetobutylicum # 3 470 14 484 493 503 50.0 1e-142 MDNLSMLTDLYEFSMANGYRQTIDDEQGVFDIFFRKVPDNGSFVICAGLQQIVESLKDFH FSKQDVDYLRSLKLFKENFLDYLSDFHFDCQVSAIPEGTPVFPREPLLTIQGPLLQTQLF ETLLLNIMNHQSLIATKARRITFAAGDKPIMEFGARRAQGPSSATFGARAAVIGGCASTS NVLAAEKFGIPAAGTMAHAWIEAFPDELTAFEKWADVYPDNASLLVDTYDVLKSGVPNAI TVFTELKKNGHKPVGIRIDSGDITQLAKGARKMLDDAGFPDAKITASNALDEHVIQSLLN EGAPLDNFGVGEKLITSSTSPVLSGVYKLAAIVQNGKMIPKIKVSASREKLTLPGLKQVY RLYRPNTNQAFADIIALNDEVLDRPMDVVKANPIATERQQSIENYVAKPLQEKVMDGEKV QAELPDVFTIQKRSKQMLKEIPSATQRLVNPDEYPVYMTPKLAQLQENLVAEEKK >gi|238617817|gb|GG669604.1| GENE 1192 1300768 - 1301178 339 136 aa, chain + ## HITS:1 COG:SPy0870 KEGG:ns NR:ns ## COG: SPy0870 COG0242 # Protein_GI_number: 15674896 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pyogenes M1 GAS # 1 136 1 136 136 129 50.0 1e-30 MIKPINHNPLTLSQRAQPATSADSQIITDLLDTLRANTQICVGMAANMIGVNKRIIVVQM GMLPVALVNPEIVEKSVPFATKEGCLSLEGQRSTTRYKEITVTYLDQNFRSHRQGFSDWI AQIIQHEVDHCEGILI >gi|238617817|gb|GG669604.1| GENE 1193 1301299 - 1301796 354 165 aa, chain - ## HITS:1 COG:alr4468 KEGG:ns NR:ns ## COG: alr4468 COG1247 # Protein_GI_number: 17231960 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase and related acyltransferases # Organism: Nostoc sp. PCC 7120 # 4 163 3 162 163 171 51.0 5e-43 MKPTFTYAEITDLPKIVDIYNETIASRMVTADLEPVSVASKRSWFNAFNHEHRPIWKIIL NDQIAGWVSLESFYGRPAYHHTVEISIYIGAEFRHHGLGQQALDFVATQLKDLKIDTIVS FIFAHNLPSLGLFKKNGFQTWGHLPEVAELDDQRRDLDILGRRYY >gi|238617817|gb|GG669604.1| GENE 1194 1302071 - 1302760 670 229 aa, chain + ## HITS:1 COG:CAC0830 KEGG:ns NR:ns ## COG: CAC0830 COG0745 # Protein_GI_number: 15894117 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 1 227 2 229 229 228 56.0 9e-60 MKILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGNEALTKLRTESDIGLMILDIMMPGMNG IEVIKEVRKDSQIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRTE EHVTNDTPDVLDIGPLTINKDSHEVKTITGTPIQLTALEFGILYLLASHPNRVFSADEIF ERVWRQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKIESH >gi|238617817|gb|GG669604.1| GENE 1195 1302863 - 1303969 877 368 aa, chain + ## HITS:1 COG:lin2515 KEGG:ns NR:ns ## COG: lin2515 COG0642 # Protein_GI_number: 16801577 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 32 349 63 379 380 190 36.0 4e-48 MLNLSIIILINQSIHTNPGLRDGIFIIKKSILIGPDHYHLWSWENIFITLMLLFDAAVVY WRLIRRYHQMQLRHIISELHYIANGHLDHRIGFKLKGNTQSVVESINALVDSVIKSMDEE RAIESSKDELITNVSHDLRTPLTSILGYLGLIQDKQYKSQEDLLKYTEIAYLKAKQMKSL VDNLFEYTKVKQTGTPLSINRIDLSQMMEQLVASFELEAKKSGLQISAQGTEKPLYIEAD AEKLGRVFNNLISNAIKYGKGGNHIYLTCRVGKPNEAVIHVSNDGPEIPKKSLNQIFERF YRVEGSRNKDTGGSGLGLAIAQSIIDLHGGYIVVTSEYHLTTFAIHLPFKHGDKLTRPDE VDDKSISK >gi|238617817|gb|GG669604.1| GENE 1196 1303988 - 1305253 1000 421 aa, chain + ## HITS:1 COG:SPy1093 KEGG:ns NR:ns ## COG: SPy1093 COG1686 # Protein_GI_number: 15675077 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Streptococcus pyogenes M1 GAS # 25 415 17 404 411 207 34.0 4e-53 MTFKIKWFLLVLGLFVLPVSAQSGAYAATVSTSQPVIYAKSAIAVDADTGQILYEKNAHQ PLAIASISKLMTVYIVRKQIQEGKLSWNDQVKISPAVAKLSTASGLTNVPLKSGKSYKVR DLVKAALIVSANAAAIALGQKVSGNAQNFADKMTKTARGLGIKDAKFYNAAGLTNKLTGS LMLKKDSPNAENLMSAKDIALLASRLEESFPGLTKITGQTQMTFAGNSYAGHNQLLDDRQ IAKGAVVNGLKTGTSDEAGACFAGSATYHGRRIVTVVLGARNNSATDPARFIQTAKLMGI VFHKQHPVKLAKHVHISGLGTTKVPDGKLTKTKLVTKKTTWVWVPKSISQNQVKGKFVKT PKKINAPVKKNKSVASANLVYDHHFLKYLDTFPSRVDLVTSKTIEKANPFVLFWRALSRL F >gi|238617817|gb|GG669604.1| GENE 1197 1305394 - 1306179 489 261 aa, chain + ## HITS:1 COG:L54719 KEGG:ns NR:ns ## COG: L54719 COG1296 # Protein_GI_number: 15673595 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Lactococcus lactis # 15 227 7 227 235 85 28.0 9e-17 MGKFAERSDAGAPYWKRILDASLPVDLSYIPIGLACGILLNASGFNVWTTLMVSVMVFSG GAQFLIASLLATNAPMLSVLLMMFFLELRYALLGSSLSKYLHDQSLGFTMIFAASMNDEN YALNYLKFSTDKKFTPKEALHVEHTTLIFWTISNLIGSLIGSAINIDLTIVHFALTALFL YMIVMQLKNGLIIVICILSGFLAAFFMVLTKSTLGLVISTLVASFIGFMIEAAIRKHHPK SGWLKSMKNPAGTPEEDVDNE >gi|238617817|gb|GG669604.1| GENE 1198 1306197 - 1306526 291 109 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0604 NR:ns ## KEGG: Lbuc_0604 # Name: not_defined # Def: branched-chain amino acid transport # Organism: L.buchneri # Pathway: not_defined # 1 107 1 108 110 156 86.0 2e-37 MEWTTTQHVWLVLGCFCVAFAPRLIPLLFFRTRKIPDWFNEWMRYVPISLFTALVVKDIF ITPTYSVTIHQIPDMIAAIIVIGVAYWTRSMAISVILGLLAVFLLAMFL >gi|238617817|gb|GG669604.1| GENE 1199 1306602 - 1306982 409 126 aa, chain - ## HITS:1 COG:BH3352 KEGG:ns NR:ns ## COG: BH3352 COG5506 # Protein_GI_number: 15615914 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 6 114 7 108 146 63 33.0 6e-11 MANDSEDFIKQHMFGNPQLKPDEKRAFLGNFRERVAIALTISQLGQSQTKEMVTKIFDQY PEYRAYLNGKMPQSLIDDYMGLAIDHRYQYTILVQNGLRVDQPTGPNDFGLVVADPKNKI KRRILL >gi|238617817|gb|GG669604.1| GENE 1200 1307324 - 1307731 550 135 aa, chain + ## HITS:1 COG:no KEGG:LVIS_2008 NR:ns ## KEGG: LVIS_2008 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 1 134 1 131 231 82 58.0 7e-15 MKKMTTFIATAALAFPLVFTAPLAASAATKPAQTTQTAAKSTTYTIAKSNFFKKAKVYHT KDATPTVYKALIGADKPTFTTTAKGKLKSGTTYYVTKVVKTAASKTAKAKTFFYVKGQGW VVASALTAGKFQQAD >gi|238617817|gb|GG669604.1| GENE 1201 1307918 - 1309123 1023 401 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509085|ref|ZP_03939134.1| ## NR: gi|227509085|ref|ZP_03939134.1| hypothetical protein HMPREF0496_1248 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1248 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 401 1 401 401 626 100.0 1e-177 MNKYVLSALVVPVALMGAVTAQAKTTLLKATVNQAKSGTKVVSGKATRGAKIKISRAGVT YGVAKANKHGHFVMKLKRAVKGGWTYKVTVTKAGFKVKSGHFKVKKGKKQVKAVKPSTTT PVTPAPASKPSSTPATQSAPTKPIVPNAPKTSVNTRISSIDIEANQISGEIFGLNRQLDA VIFGQRKLDATQRAFLSNQIYQLQNRVNVFATRSGVSSATISSMNNELTMLRQKFNGLSN TVVLSGSTGTTKPASDVHLQNVVKTDKSASQQIAELQKQNQLLNESASKLDIQIANLNTK LETEKYLDESISKFLEKVSDELADAKEANQKRPSQKHEEYVKQIQQEYDQAVSQQEINKR NCLDALDDAKYKRQELRDQIQSNEVHIKSIQEAQKRAVTNN >gi|238617817|gb|GG669604.1| GENE 1202 1309329 - 1310252 711 307 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0606 NR:ns ## KEGG: Lbuc_0606 # Name: not_defined # Def: lipoprotein # Organism: L.buchneri # Pathway: not_defined # 14 306 14 300 300 253 62.0 9e-66 MKKWIWIVITIVIAASVGGYAYARHSQNEKLYNDSMQRASLQISNKSYIAAETSFTNALK RKPSDKKATRLLSQTQNYMAANDSFSDRDYNSAKDGYQSVVDTKNGNETLKDRSKDKLST IKTIQGNLKKYDKIYNQALNETGEGNYTESNSTLDKILSDQTAKQSYYKSILNKAKQLRS KNNASLSGNTTTTPSSSSSTNEFESSTSNSSTQNNPNVAPNSSDSLTSSEKKAANAYKGS NEFTVNPKKNRINGQQITESQVNSARKEISAAGVDSNAMSDQDIKNIIKGAHDNHETIGQ YVKARYK >gi|238617817|gb|GG669604.1| GENE 1203 1310587 - 1311549 804 320 aa, chain + ## HITS:1 COG:lin0948 KEGG:ns NR:ns ## COG: lin0948 COG0628 # Protein_GI_number: 16800017 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 1 302 32 330 348 268 50.0 1e-71 MMSTLLLTFIFCLLVVKLTNGIRRFVKIPSEVIVVIVYLLVLAGLYFGVTVYIPQVADQA ISSTKDIVDFYSNPSNLPDDNTLRWVNELIKQSNVMAQMKNGVSLIWRYITGVGTMGITL FLSMILSFFFAIEKKTMYNFSHLFLDSDFSWFFQDLYFFGKKFVATFGVVIEAQFFIAIV NTVLTTIVLAFMHLPQLAVLALMVFILSLIPVAGVIISFIPLSLVGYSVGGLQDVLYLII TIVVVHALEAYVLNPNFMASKTNLPIFYTFVVLLVGEHFFGVWGLICGVPVFTFLLDILG VKRHNEPLPPAKPDTKTFKY >gi|238617817|gb|GG669604.1| GENE 1204 1311687 - 1312382 775 231 aa, chain + ## HITS:1 COG:SPy1429 KEGG:ns NR:ns ## COG: SPy1429 COG0588 # Protein_GI_number: 15675343 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Streptococcus pyogenes M1 GAS # 3 230 1 228 231 313 65.0 2e-85 MILAKLVLIRHGQSEWNLSNQFTGWVDVDLSEEGVKQAINAGKLIKKAGIEFDYAFTSVL TRAIKTLHYALEYSDQLWIPEEKTWRLNERHYGALQGHNKAKAAEKYGEDQVHIWRRSYD VLPPLLDASDEGSAVHDRRYANLDPHIVPGGENLKVTLERVMPYWEDKIAPLLLDGKNVV IAAHGNSLRALSKYIENISDEDIMNLEMATGEPVVYDFDDKLNVTNKTKLD >gi|238617817|gb|GG669604.1| GENE 1205 1312414 - 1312545 67 43 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509089|ref|ZP_03939138.1| ## NR: gi|227509089|ref|ZP_03939138.1| hypothetical protein HMPREF0496_1252 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1252 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 43 1 43 43 87 100.0 2e-16 MVRLFFSYITKHQAPRHDMGNNQANMDDQSPCWPDWVKYNGLI >gi|238617817|gb|GG669604.1| GENE 1206 1312542 - 1313198 675 218 aa, chain - ## HITS:1 COG:SA2266 KEGG:ns NR:ns ## COG: SA2266 COG4221 # Protein_GI_number: 15928057 # Func_class: R General function prediction only # Function: Short-chain alcohol dehydrogenase of unknown specificity # Organism: Staphylococcus aureus N315 # 1 175 4 176 231 64 29.0 1e-10 MTNKIALIVGPGHAGLGEALANRYGQKGYTIALLGRNPDPLNDLVKTLTASNISAFSVTA DLASPASVSTALKEIAQKGDLQVVLYTATTRTKNKPADLTSDLLTESLASNLLGAVTVTN LALPYVKKTGDGVFLYTGSIVAAKPGTSDVEQSIGKAGLHSYVIALNKELSKSGVFAGIV TINTYIRKGKPGHMDPNVIAKAFEDLGNDKKAAEVQYH >gi|238617817|gb|GG669604.1| GENE 1207 1313218 - 1313760 202 180 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 10 175 2 172 185 82 32 5e-14 MQLNKRKFERRTYMVKSTNGVDLYHSLFGTEIHDPRVMFEMLTVNIFQPGLNWRVAASKL PVFDKVFKHFEVAEIAKFDEMDLEALEENPDMIRNPRKIRAVVQDARATLNLSPEFKDLA DYLWSFKPKDNLVEGALVQDSSTLGALVARDMKKRGFTFVGPTTIELLLVGTGVLKHINP >gi|238617817|gb|GG669604.1| GENE 1208 1314332 - 1315774 1334 480 aa, chain + ## HITS:1 COG:L94890 KEGG:ns NR:ns ## COG: L94890 COG0531 # Protein_GI_number: 15674017 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 13 470 8 476 490 396 49.0 1e-110 METQPKQKGKPGGIGLTALTAMVVTSSIGAGVFALTSDLATAASPGPVLIAWGLVGFGIL MLALSLNNLVLKRPDLEGVFAYAEEGFGQYAGFISGWGYWLSSWMGNVAFATVMMSAVGY FIPIFKSGNNVPAIITASIISWCLTYIVNRGVESAAILNAIITICKLIPLFTFIVFSILL FKANVFTAHFWNNVSGNFSGGAGVGSQIKNCMMVMMWVFVGIEGATMMSSRAKKKSDAGK ATILGLICLLSIYVLASVLPYGYMTRAELTTIHQPAMVYIFKSMVGNWGGALISLGLIIS TLGSWLSWTMLPAETVMLMSKRKLLPPIFGKKNKHGAPTFSLVMSGALIQVFLFTLLFTD RAYNFAYSLCTAAIVICYIFVAAYQVKYSYQHLSEKGNLIQLFVGAFAFIFECVGIYMAG LQFVLLCAIAYIPGFFLFMKTRKDAGYDKWFSRIESIVTAAIVTGAVLGIVLLTMGRISV >gi|238617817|gb|GG669604.1| GENE 1209 1316142 - 1316801 576 219 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0833 NR:ns ## KEGG: Lbuc_0833 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 58 204 1 147 158 84 32.0 3e-15 MNKVYDDSAANQSANVNVKKQSSHHIIQHKQDPNDIDHAPLYKIGQYYNSPRYGRIKLTG ISTERNLVFMRNQLTTTINWAKVCTNTPKTAAQRANSASDYNLDKVDNPYTYLKVQYTVQ NHSSNAMTFGGVKQVGFANGNVLGGTDELVIDDGQSEQLAPHSKRVFTIHVLIDKFTDQA HPKSVHLYFDDSKGAVTLKKVSQGFNCLLPFTYDRGKDA >gi|238617817|gb|GG669604.1| GENE 1210 1316933 - 1317538 608 201 aa, chain - ## HITS:1 COG:SAP005 KEGG:ns NR:ns ## COG: SAP005 COG4300 # Protein_GI_number: 16119205 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted permease, cadmium resistance protein # Organism: Staphylococcus aureus N315 # 1 201 1 204 205 134 38.0 2e-31 MLTTILTGITAYISTSIDYLIILMVIFGATPKRHRFLVYLGDFLGTAILVLTSYLMAVIL GFVPAEWLLGFLGLIPILMGVKLLIFGEKEDDDLIENEIQKKTNVILKVAIITIATCGAD NIGIYVPLFTQISPTNIPILLVTFFIMMTLFCYLGYLLSKIPTIGNILEKWSRYITAVVY IGLGIYILWESGTLTHLIQLL >gi|238617817|gb|GG669604.1| GENE 1211 1317706 - 1318122 224 138 aa, chain + ## HITS:1 COG:L11493 KEGG:ns NR:ns ## COG: L11493 COG0394 # Protein_GI_number: 15673355 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Lactococcus lactis # 1 134 1 133 133 165 58.0 2e-41 MPKIYFLCTGNSCRSQMAEGFAKKLLNDSWHVESAGIEKHGLNPLAVKVMSEKKIDISRN QSKLIDRAYLNQCDLVVTLCGDARDRCPVTPSTVEKRHWPLRDPAQAHGSNLEVLDAFRQ VRDQIEKRVAALAKQLNA >gi|238617817|gb|GG669604.1| GENE 1212 1318205 - 1319026 626 273 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2079 NR:ns ## KEGG: Lbuc_2079 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 20 269 21 268 269 179 41.0 1e-43 MVKRVLLGMALIFSFILIDQSVASAAKVTKNSFLTTKRVIKTYNSSKTIKVTIPKGTTVL VNGTKNDNGQKYVSLNLNRLRYQIRRPLITAQNSSRVSRWILAKGQNFSKTNKPVYLSYY SLTRSNKGHALLSYVANGDLWKGSTLPADYAQLTGTRFTITTDGYLDFFSSSPYKYTISP KPTSSTEIQKSYYRSSRQLYLYFKTKLKGLPVTKVSTKGNNRYRLSINRTTQTTSTAIPN EDDATRVTLNEIYQIGKTDYYMHTENARFLGED >gi|238617817|gb|GG669604.1| GENE 1213 1319029 - 1319865 613 278 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2080 NR:ns ## KEGG: Lbuc_2080 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 6 277 5 270 272 154 35.0 3e-36 MKQTRRLVNMILALIATFALQMTVAQAKTTYLSVSARDYLQTTQKLTVTNSYYKNIKMTL PKGTVVQVASAARSQKTHHPFFTIDMDTMSYRLRKPFYNAKSKPNMTAGIWATTADFKKV DSPQYLRYYQVTSPDTRSAGDYVADGNLWQGDKWPANETTAKASGVKVTVDGYLEAYSKV KVFQAYAPKPVGYAKIQKTVTNGKTTDFYVASKIKGMPLTRVAKSGKDQYRLSITRTGEH GVTMIPEDEHPQYIDSVEVSEKYLIDNQNYYMHTEVLF >gi|238617817|gb|GG669604.1| GENE 1214 1319950 - 1320609 473 219 aa, chain - ## HITS:1 COG:no KEGG:BMQ_pBM50082 NR:ns ## KEGG: BMQ_pBM50082 # Name: not_defined # Def: hypothetical protein # Organism: B.megaterium_QM_B1551 # Pathway: not_defined # 4 213 5 213 215 84 28.0 3e-15 MKSDISEMYLLLNETDGNRSAIMRSMRKRAYLSASVLFDLQLGGIIKLTDKGMQVIAPLS KDYGFLNPVLDILNDRENKSSKNSLRHVVLNRKINRIVYDGIGEKLLFKNRATKTSSRGL IFSHDKYIPRAEAKKLVVNQIKAELLGSNTASLEIIALVANLSRSRTLKNYFDKDQRAQL TQQVKDLRHNPEYETFFKFAKWVDDFITAIIVAASSGRG >gi|238617817|gb|GG669604.1| GENE 1215 1320802 - 1321038 305 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509099|ref|ZP_03939148.1| ## NR: gi|227509099|ref|ZP_03939148.1| hypothetical protein HMPREF0496_1262 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0497_1127 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0497_1127 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0496_1262 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 78 1 78 78 156 100.0 6e-37 MTELLVHNTNVPQPIKLSDGKPGYLSVKREGNHFRYFFKFEAHEHHDFWYDAPALPNDLV IKVASIDGPESFRIKLIN >gi|238617817|gb|GG669604.1| GENE 1216 1321472 - 1322098 591 208 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2011 NR:ns ## KEGG: Lbuc_2011 # Name: not_defined # Def: cation efflux protein # Organism: L.buchneri # Pathway: not_defined # 1 204 1 204 207 281 78.0 9e-75 MENQLQKRHLVSSSLRTEYFSTGWMAFEFLVGFISGLEAGSILLIAFGLDSFLEIISGST LIWRLRKEANGASAEEIQSAEKRSSLIVGTILLLLSVYVIFVSLFNLVNHQAADTSYSGI AIALASVVLMPILTFRKRALGKQLHSDALVEDGMCNITCAYMAATVLVGALLTFFFNWWW ADSVAALVLVYFIASEGWESFQEGRGQD >gi|238617817|gb|GG669604.1| GENE 1217 1322293 - 1322532 252 79 aa, chain + ## HITS:1 COG:DRA0071 KEGG:ns NR:ns ## COG: DRA0071 COG0640 # Protein_GI_number: 15807739 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Deinococcus radiodurans # 1 68 56 123 125 57 42.0 8e-09 MLKVLEQRELNVGELGDLLGLEQSVVSHQLALLRKHQLVSSERVGKANYYRLDDPHILDV VNEMLEHADHVMRGKTHGH >gi|238617817|gb|GG669604.1| GENE 1218 1322698 - 1322904 122 68 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509102|ref|ZP_03939151.1| ## NR: gi|227509102|ref|ZP_03939151.1| hypothetical protein HMPREF0496_1265 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1265 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 68 1 68 68 128 100.0 1e-28 MLKLMAVVDTQSTFSYNRMRRYCSSRVGVPLKKKGTTIENEKFYPDEITGASFSDAKTGV TQNSNNWG >gi|238617817|gb|GG669604.1| GENE 1219 1323083 - 1323982 797 299 aa, chain + ## HITS:1 COG:L171943 KEGG:ns NR:ns ## COG: L171943 COG1477 # Protein_GI_number: 15672350 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Lactococcus lactis # 3 294 34 325 325 345 55.0 5e-95 MAEQLDATNRLIAYYENLLTVNRPQSEVMAINDAAGKHPVQVSDATYTLTKRALQLSRQH FGFNATIGPLVKLWKIGFKGANVPSESAIKEKLALINPDQTDFNDQALSIFLKQSGMQLD LGGIAKGYIADRIADYWRAYGKRSGIIDLGGNLLLVGDSPAHQDRQWRIGVQDPSSERGQ SILNVKIGPCSAVTSGIYERHLEVNGHSYHHILDSQTGYPKQNDLASITIFSKYSIDGEI ETARLFFAGKPLAGWARDRPDIYGAVFVTRDRHVTIVGLEDATVTLLDESYKVQKESKG >gi|238617817|gb|GG669604.1| GENE 1220 1324052 - 1324468 380 138 aa, chain - ## HITS:1 COG:NMA1517 KEGG:ns NR:ns ## COG: NMA1517 COG0789 # Protein_GI_number: 15794411 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Neisseria meningitidis Z2491 # 3 117 2 118 135 58 33.0 3e-09 MKTYSISQVSEMYHLPTTTLRYYEDLGLLYDIPRKGNRRAYTQQHLDRLGSICCFKNTGM TLSELQTLFSYSEHGGDLDKIVDLLDQHCQEVDEQLALLKQNQQHIKRKLHFYQDIRTAE QTNTPLPDWDNYRSKTFH >gi|238617817|gb|GG669604.1| GENE 1221 1324580 - 1325596 967 338 aa, chain + ## HITS:1 COG:STM2406 KEGG:ns NR:ns ## COG: STM2406 COG0667 # Protein_GI_number: 16765732 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Salmonella typhimurium LT2 # 1 327 2 328 332 394 57.0 1e-109 MYQANDKRYEKMVYNRVGKSGLKLSALGLGLWHNFGSVDSFENQKAIIHQAFDLGITYFD LANNYGPVPGSAEKNFGQIMAGDMKPYRDEMIIASKAGYEMWDGPYGDWGSKKSIIASAN QSLTRLGLDYVDIFYSHRPDPETPVEETALALDQLVKQGKALYVGISNYNGQQTEAITKI FNDLHTPFVIHQPRYNMFDRTIEKDLFPVLRKEGKAAVSFSSLSQGLLTDKYLHGIPENS RAAKSTSPFLHPLQVEETIKTVQQLNEVAKKRGQTLAEMALAWNLREPEIACVLVGASRP QQLLDNAKALDNLTFSSEELAEIDQILGNQSNIKWGAH >gi|238617817|gb|GG669604.1| GENE 1222 1325867 - 1326313 395 148 aa, chain + ## HITS:1 COG:SP0727 KEGG:ns NR:ns ## COG: SP0727 COG3682 # Protein_GI_number: 15900624 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 9 137 5 133 133 80 34.0 9e-16 MIDAKDVAISDSEWEVMRAIWTLKHVTSRQLIDVMSSARGWSESTTKTLLHRLITKDAVV RVGDGRPFEYEPAVDERDSMGAAAVNLFDHMCAMRAGDTLVKVIDSRDLSQSDIKKLQTI LAEKAKTAPEMVDCNCLPQEMMSGDGCQ >gi|238617817|gb|GG669604.1| GENE 1223 1326525 - 1326713 236 62 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509107|ref|ZP_03939156.1| ## NR: gi|227509107|ref|ZP_03939156.1| hypothetical protein HMPREF0496_1270 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0497_1135 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0519_2708 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0497_1135 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0519_2708 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0496_1270 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 62 1 62 62 100 100.0 3e-20 MITLLLLASIAVYYVVTRSSNNQSKTTRDQFGRQHAYARARNDEPEILDKGQTNGRSRRN VN >gi|238617817|gb|GG669604.1| GENE 1224 1326850 - 1328205 1032 451 aa, chain - ## HITS:1 COG:no KEGG:LEUM_1317 NR:ns ## KEGG: LEUM_1317 # Name: not_defined # Def: hypothetical protein # Organism: L.mesenteroides # Pathway: not_defined # 1 451 1 451 451 737 81.0 0 MDNKSNPKAPKKFHLSQRHHMTIPWNSFIQNDNLPARKASLRERASIVGRIGIIMLSCGT GAWRVRDAMDKVARKLELTCSADIGLISLEFTCFSNDHSYTQVLSLPNTGVNTDKLNILE NLVKNFDDDFSSLTVRQIHNIIDDVQKRPKQYSPLISGLAAALACSAFIFLLGGGIPEMI CSFIGAGIGNWTRAMMGKHSMTTVASISISVAVACLTYMCTFKIFEFYFQVLAQHEAGYI GAMLFVIPGFPFITSILDISKLDMRSGLERLAYAIMITLIATLVGWLVALIFNFRPADFL PLGLSPFVVMLLRLPASFCGVFGFSIMFNSSQKMAMVAGCIGAVANTLRLELVDLTSMPP AAAAFFGALVAGLIASIVNRYNGYPRISLTVPSIVIMVPGLYIYRAIYNIGTNQIAVGAL WLTKASLIIMFLPLGLFVARALMDKEWRHFD >gi|238617817|gb|GG669604.1| GENE 1225 1328451 - 1329968 1260 505 aa, chain + ## HITS:1 COG:yjeM KEGG:ns NR:ns ## COG: yjeM COG0531 # Protein_GI_number: 16131981 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 5 499 21 512 514 451 49.0 1e-126 MKHNKIKTSGLVLMIISTIFGFANTTVAYEQMGYASIIWYVLAAVFFLLPSSLMFAEYGA TFKDAHGGIYSWLAGSIGEEWAFIGTFIWLSSWIIWMTSTASKVWIPFSTTLFGSDKTQS WGVMGLNSNQVIGILAIFWILTITWFAVRGMDSIARIASIGGIFTILLNVIFGIASLMIL YLNGGHFAQPINGISSFIQSPNSQFQSPVTLISFIVYAVFAYAGTESMGGVTDNMDKPEK TFPRGLIISAVIITLGYSLTIFLWGISTNWQKVLGNDQVNLGNITYVLMNNLGYSLGEGF NLSASASAFLGGLFARFAGLGMFIGYLGSFFVLVYSPLKSFIMGSNPNFWPKRMTELNKK GMPAFAMWTQAAVVVVIIFFVSFGGSSAQQFYVILTNMGNISTSFPYLFLIAAFPFFKRQ KNLQRPFEIYTNRRWTDFIVGVVLFVLVAGIGFTAIAPVLAHDYQTAFWTIIGPIFFGFV AWVFLQYQNKKKSKSHNWAENPNQN >gi|238617817|gb|GG669604.1| GENE 1226 1330100 - 1330876 427 258 aa, chain + ## HITS:1 COG:mll6620 KEGG:ns NR:ns ## COG: mll6620 COG1477 # Protein_GI_number: 13475525 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Mesorhizobium loti # 48 239 32 230 247 68 26.0 1e-11 MQTINDTIQTSLFRHLRVSVVISEMVNHKVNQFKNKFTAITGQIKEKFDQVDQVFSLQNS GSLVAKFQRGDRQQLLESPDFQTVYSLANISKNKTNGYFDPFDGGRYTPSDLIKSWAVDQ VFNQYLRPLVELPVAGIMLEADGVIQTAVATSSAFHWPVLVHDSFKGEGLLEKYQLTGGG IVTVNAKTSKRPQSPIKQLTIISERVSEATIWAIAGLNAGTAKFLRLINQKHLSGILIDR ALGVIEFESGKLAQKQVF >gi|238617817|gb|GG669604.1| GENE 1227 1330938 - 1331603 424 221 aa, chain + ## HITS:1 COG:SA0565 KEGG:ns NR:ns ## COG: SA0565 COG2231 # Protein_GI_number: 15926286 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein related to Endonuclease III # Organism: Staphylococcus aureus N315 # 9 193 7 191 211 173 45.0 2e-43 MQDINPVCLYHKLFDEMGPQHWWPADTKMEIVIGAILVQNTNWNNVDLALQNLRTVTGLD PKQILNLSAVRLQQLIRPSGFYVNKTKSLLSVLGWFNDHQYDFSGMVQQYGPKLRHQLLN LTGIGEETADSLLVYVFDQPAFIADKYARNLFQFLGCRHIETYAKLQKRIRLPVDFDYRD AQEFHGLIDEFGKLCKTREQFQKSFLNGFSLQQGLKSEIKK >gi|238617817|gb|GG669604.1| GENE 1228 1331801 - 1332667 824 288 aa, chain + ## HITS:1 COG:lin0212 KEGG:ns NR:ns ## COG: lin0212 COG4975 # Protein_GI_number: 16799289 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Listeria innocua # 4 267 1 262 285 167 38.0 3e-41 MFVLSILLLLLPALGWGLLPPIVAKIGGKPANQIFGTAAGLLLASLIVFAVVRPTTDMKS FLLAGLAGAFWIAGQVGQYIGYKKIGVSTTMPISTGMQLIGTSLIGVFIFGEWSTGIEKA AGITGIILLIIGIWLTSIKDKSKTENKKVLTSTIIMLIFTTIGYCIYESIPKGLQSSGIA IFLPESIGMCVGVLIYLLFSGQMSVFKEKTSWLNSIGGIVFSFAAVSYIYSVRYNGVNTA FIVSQLSVVISTLGGMLVMHESKSKRELTFTLIGLVLIIGGAFITSVF >gi|238617817|gb|GG669604.1| GENE 1229 1332681 - 1332914 228 77 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFRSLFFLLKDNISVSNLIKLMISDVSAILTTSYDLFQVAFILTSIKSNRNVICWKPPLP TQLRIIPQLTIIIALLI >gi|238617817|gb|GG669604.1| GENE 1230 1333015 - 1334412 305 465 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 14 453 9 435 447 122 26 6e-26 MKRKDNGLLYGPEDKVSYFQSGLLGLQHVLAMDVYVPPLIIAGLLSMSVVQKTGFLQAAF LACGIGTILQTKFFMKLPVSQGPSFVPIGAVAGVYLANGGPNGGMATVLGSLIIGAVLLI LLGLSGIYQKIINTLVPALVGGTIITCVGLSLLPSALNDNIFKATGNVGQNIEIAAITGF VMLLAITIGIRIPQLQRLFRVSSIIIALIAGTVAASFMGRFDWSSVNNAPWFSIPQFTSF HYGFHFSLPAILTFIVIYMVLTTETTGTWFAMSAVVGEKISKKQWNQGIIGEGLSCFFAA ILGTTPMTGYSTNAGVISITGVASRRVFVSAGIWFIILGFFGKLSAFLSAVPAPVIGGIF SIICVIIMLNGLNVIRYLDTNESAIYILGIPIVLTMAVILVPSHLVSSTPQMIQYLLGSP ITIAAVSAIILNLVMGDHRPETETVDEPRESKKTVDHDTKLAATK >gi|238617817|gb|GG669604.1| GENE 1231 1334396 - 1335766 929 456 aa, chain - ## HITS:1 COG:SPCC1672.03c KEGG:ns NR:ns ## COG: SPCC1672.03c COG0402 # Protein_GI_number: 19075374 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Schizosaccharomyces pombe # 71 446 70 443 527 241 36.0 3e-63 MSFISITTIIEGSTITSTGPETISFLPHQLICIDNSGYISRIIDQTDPDYSSTRNAAKRQ NQLISLNEDDFLLPGFIDLHVHAPQWPNAGLALDKPLNEWLNDYTFPLEAKYKEVAFAKK VYNHLIQELVDNGTTSALYFGTIHNEANLELAKACIRHQQRGFIGQVTMDNPDQTPSYYR DASAKQAISHAETFIQQVIDLNRTADLKQTPVITPRFVPSCTPESLAGLGALAQKYDLPI QSHCSESDWENSYALTHYHKRDAEVLDQFGLLTDRAIMAHGTLLNQSDLDLFKERGVAIA HCPISNAYFGNAVLPVAKILAQQNKIGLGTDISGGYSPSLYRNIDQAIVSSRMLHDGVDQ ALPPAKRGTSINAITAKNGFYLATVGGAQSLHLKTGQIKVGYLADLQVVKAPYPTFTDQT PDDIFEKLIYHTTKNNIKQVFVQGKLAKEGHYETQR >gi|238617817|gb|GG669604.1| GENE 1232 1336110 - 1336580 338 156 aa, chain + ## HITS:1 COG:FN0673 KEGG:ns NR:ns ## COG: FN0673 COG2606 # Protein_GI_number: 19704008 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 1 153 1 153 154 139 47.0 2e-33 MSRENVQQYFEHLGLSERIKVLDQSSATVADAAAALGCEPEHIAKTLSLLIDEQPILVVM AGDAEIDNHKYKETFHKRAEMIHRQEVEAYIGHAPGGVCPFAVKANVLTYLDVSLKRFDT IFPAAGDSHSAVKLSLKELEACAKAEKWVDVCKNWA >gi|238617817|gb|GG669604.1| GENE 1233 1336806 - 1338179 1369 457 aa, chain + ## HITS:1 COG:SA0956 KEGG:ns NR:ns ## COG: SA0956 COG1914 # Protein_GI_number: 15926690 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Staphylococcus aureus N315 # 20 455 10 446 450 468 57.0 1e-131 MKDDEEKSDKQKLFSFDEQEGKSLDEVNGSIEVPDNAGFWKTLFTYTGPGILIAVGYMDP GNWITSIAGGAQFNYKLLTVILISSLIAMLLQAMSARLGIVSGKDLAQLTREHTSKRVGF FLWIITELAIMATDIAEIIGSAIAIKLLFNIPLIIGILITSADVLILLLLMKMGFRKIEA IVATLVAVILLVFAYEVFLSGPKVDQVLAGYFPSSDILTNKSMLYLSLGIVGATVMPHDL YLGSSISQTRAVDRSDRGAVRKAIRFTTIDSNIQLTLAFIVNSLLLILGAALFFGTHSEL GRFVDLFNALSNSKIVGAIASPLLSMLFAIALLASGQSSTITGTLSGQIIMEGFIHLHMP LWAQRLLTRLLSVTPVIIFAIYYHGNEAKIENLLTFSQVFLSIALPFAIVPLVIFTSSQT IMGEFANRVWVKYAAWIATVVLVVLNIYLILQTFHAF >gi|238617817|gb|GG669604.1| GENE 1234 1338414 - 1338569 75 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MELLVIVIFCGLSMGAGLIIEGCTYWECHFGGSRSRPTHHVPNQTGHHLHS >gi|238617817|gb|GG669604.1| GENE 1235 1338688 - 1339347 369 219 aa, chain - ## HITS:1 COG:lin0926 KEGG:ns NR:ns ## COG: lin0926 COG1309 # Protein_GI_number: 16799997 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 19 215 21 218 218 106 31.0 4e-23 MLTKVSYKLFTENHVFDDLTDKQSKILIAAIKVFAEKGYSNSSTKEIAEEAGVAEGNIFS RFTNKRGLLQAIIDPVIQSIFPATLNKFTDAQIVDKYTTLHAFIEASVKDRVRFMEENAD VLKIFMAEMIYDDQLRADFQDQFASSATFYLENINRNLSMFKANQFLVNWANTEILRIMW SVVAGLAVSYLFFKQPVTSTEINHTVDALTKALSQKMVD >gi|238617817|gb|GG669604.1| GENE 1236 1339604 - 1340974 1194 456 aa, chain + ## HITS:1 COG:SA0956 KEGG:ns NR:ns ## COG: SA0956 COG1914 # Protein_GI_number: 15926690 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Staphylococcus aureus N315 # 22 453 13 445 450 459 57.0 1e-129 MRESVVSSKHRFFESTEGSNKSLDEVNGSIKVPKDAGFLRTLMAYTGPGILIAVGYMDPG NWITSIAGGAQFKYSLLSVILISSLIAMLLQSMAARLGIVTGKDLAQLTRENTTKRVGFA LWVVTELAIMATDVAEIIGSGIALELLFKIPLVVGILITSADVLLLLVLMKLGFRKIEAI VATLVLVILGVFSYEVFLSGPQMSQLFAGYLPTTHIVTNKSMLYLALGIVGATVMPHDLY LGSSISQTRAVDRSDREDVAKAIKFSTIDSNLQLTIAFIVNSLLLVLGAALFFGTHSTVG RFVDLFNALGNSSIVGSIASPMLSMLFAVALLSSGQSFTITGTLSGQIIMEGFIHLRMPM WAQRLLTRLLSVTPVLIFAIYYHGNEAKIENLLTLSQVFLSVALPFAIIPLVKYTSDKKL MGEFANKAWVKYCAWTATVVLIGLNVYLILQTLGLI >gi|238617817|gb|GG669604.1| GENE 1237 1341627 - 1342535 652 302 aa, chain + ## HITS:1 COG:lin0568 KEGG:ns NR:ns ## COG: lin0568 COG0598 # Protein_GI_number: 16799643 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Listeria innocua # 13 297 14 297 301 129 31.0 7e-30 MIKPEKEVAGIKWIETEKLTAEEREHLQEQYAIDEDIMTYVTDKDESANYVHDINEGDQL FIFLAPYSIDRKNLRYITRPFAMLLHEGRLFTFNESRIHEVTASLRDAMDNPEVHTVDAF ILETLFSLVDSYIPISREASKKRNRLDKMLNRNTKNADLIALSHLQQTLTFLSSATQINL NLLNRLPRTYFGNNADQDKKDLFEDVQIEAEQVQRMIEIETQVVDRIDHTFNNIANNNLN DTMKFLTIWSLTMAVPTIITGFYGMNVALPLSRMEDAWVLVILISVTLIVWLLIMLRVRH KM >gi|238617817|gb|GG669604.1| GENE 1238 1342788 - 1343642 776 284 aa, chain + ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 31 283 38 297 298 160 36.0 3e-39 MKNNSAAFATSTSSFEAGAIPISESQGVQIKTLAPTKSEADHEIKLEGAFNVRDLGGFVT KDGRRIKDHLLLRSARLNHLTKNDIQVLTHQYNVGIDFDLRRPQEVAEAPDMKMPGVKYI NDSVDTDESFHYHINDRNNRKHYRSYISNQRAREAYHDLFMTLLNANDKAVLWHCASGKD RTGLGGALIMYVLGVDMATIFDDYDASNDFLRAHNMKRLEALKTAGASRDELELARVDGG VDRSYLHAAFDEVKKEFGSIDAYLVNGLRISKRQQRKLRKQYLI >gi|238617817|gb|GG669604.1| GENE 1239 1343785 - 1344030 271 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509121|ref|ZP_03939170.1| ## NR: gi|227509121|ref|ZP_03939170.1| hypothetical protein HMPREF0496_1284 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1284 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 81 2 82 82 146 100.0 5e-34 MRSWGCGSGWSGFGHMGWMGSGMSYLTIALIVILVVVLYMAFRTNRQSNQQSSAMAILDE QYALGKISEDEYLKRKKNLGK >gi|238617817|gb|GG669604.1| GENE 1240 1344103 - 1344522 393 139 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509122|ref|ZP_03939171.1| ## NR: gi|227509122|ref|ZP_03939171.1| hypothetical protein HMPREF0496_1285 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1285 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 139 1 139 139 229 100.0 4e-59 MTLLKSGIITTAIFSFALFSGSTALAKDTALKPIPSTLRGTWKGAYTTTDAGYSFTLTVS KYRLTQNGIKFNMQSDRNSKSSTGFIMSNKPNKKGYWKFTLTVSHDKMYLKRTKKNGKTA LIRYSYDTHRKPVVQYLFK >gi|238617817|gb|GG669604.1| GENE 1241 1344671 - 1345624 649 317 aa, chain - ## HITS:1 COG:BH0949 KEGG:ns NR:ns ## COG: BH0949 COG0111 # Protein_GI_number: 15613512 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Bacillus halodurans # 40 317 43 316 316 182 33.0 9e-46 MKLGLCFAINSKERQQLNAMSNLEIIDNTSNDQSINDWKDVNIIYGWNQFGERVINQPNQ IGFIQSVSAGVDYMPLAKIKDQHILLANTSGIHAEPIAESVIGYILAFSRGILSSLNAQK DHKWLSDSLRQHVYNLKNVPIAIYGTGKIGSKIAYYCHLFGMKTIGINTSGHTVPGFDHI LPTQISSKQIQSAKFIVNTMPLTSKTSRYFNQGLFNAFTNQPIFINVGRGPSVDTDALKT ALKNHQLSGAVLDVFDQEPLDKESILWDMPNVLITPHISGSFSTYNEAAFSIFYKNLQSY LADGTVAVNQVDLNRGY >gi|238617817|gb|GG669604.1| GENE 1242 1345901 - 1346920 914 339 aa, chain - ## HITS:1 COG:TM0067 KEGG:ns NR:ns ## COG: TM0067 COG0524 # Protein_GI_number: 15642842 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Thermotoga maritima # 1 339 1 336 339 253 39.0 5e-67 MKLTSFGELMLRFKPADCTRIIQATSFEASFGGAESNVAVSLSLLGDQSSFITKLPQNML GEAALYRLRGYGVDTTKVLRGGQRIGTYYFEKGTSIRGTNVIYDRAHSSFATSTSNDYDW KTTLKDTDYFYVSGITPALSTELQKTVLKAASYCQQHHIKVVYDANYRGKLWSPEESQAF SEKMMPYVSIVFAHDEDFESSFGIKAFDGDMTNGIAQKKQFEAAMTQLTERYPNLETVGS VLRNIYTVEKSQWSAILLQNNHFYDSPVYPVDVYEGVGGGDAFAAGIMHGFLNQYDPQKQ INFGIAASVTKLTISGDFNLAYSDEISKLAERGGAAMNR >gi|238617817|gb|GG669604.1| GENE 1243 1347086 - 1347745 710 219 aa, chain - ## HITS:1 COG:L0240 KEGG:ns NR:ns ## COG: L0240 COG1802 # Protein_GI_number: 15673615 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 3 217 7 222 227 165 40.0 5e-41 MQSLNEIAYQTILDDILKLKLTPGERVQDKNLVDKLNISRTPVREAILRLKNDGLMDTVP QSGTYVTKISLKSALNARFVRQSVERSVVEEASQEMSDFDVLDAQNVIEKQKLAAKNRNS VDFFYLDNDFHKKFYTATGKDEVWNWLKVLTLQLDRYRFLRIQKTEMPWEELIEQHQGIL DATKSHNQQLSGQRAFDHLNLMLAEKKTLVSEFPDYFID >gi|238617817|gb|GG669604.1| GENE 1244 1347933 - 1349012 820 359 aa, chain + ## HITS:1 COG:TM0069 KEGG:ns NR:ns ## COG: TM0069 COG1312 # Protein_GI_number: 15642844 # Func_class: G Carbohydrate transport and metabolism # Function: D-mannonate dehydratase # Organism: Thermotoga maritima # 4 356 1 354 360 466 60.0 1e-131 MANLKMGFRWFGQKDDPISLAEIRQIPQTKQVVGALFDVPVGEVWPQEKIDALKKQVEDA GLKLEVIESVNIHDDIKIGLPSRDQYIANYIQTIKNLSKAGIKVICYNFMPVFDWLRTDL HHQLADGSNAMMYEESKLPKDPKDLMAEMTSGSHGFSLPGWEPERLAALKDLFAAYKDVD AEKLRENLKYFLDAVIPVCEKYDVRMAMHPDDPPKPLFGLPRIFKDRDDMIKIEQLHESR YNGFTICTGSLGENPLNDLPSIIREFVPKDRVPFMHVRNIKYVGENAFHESAHPSSEGSL DMFDIMKALHDTDYDGYIRPDHGRNIWGEDGRPGYGLYDRALGITYLLGLWEALEKTSN >gi|238617817|gb|GG669604.1| GENE 1245 1349102 - 1350088 814 328 aa, chain - ## HITS:1 COG:BH1516 KEGG:ns NR:ns ## COG: BH1516 COG1609 # Protein_GI_number: 15614079 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 4 327 5 331 343 163 32.0 5e-40 MGTTIKDIAKLAGVSPATVSRVLSGQTDFYSEKTAKKVKQAVKKLGYQKNTSAVELVTQK SHVLAVIISTIQTNAADQIIDGIQETAMKNGLDVIILYAGEKNPDLQRRALETVIERAVM GILLVAIDLNTKNDALLRSANIPFLFLSIGFLKGRFPFISSDDFQVGYQATKYLMDKGHT KIGFAAADPETVIGQLRLAGYWKALSSNHVTPKLDWVYDGEFTYDDGIAAMSYYEQHTDL TAAVASSDLAAIGMLNQAQKLGIRVPNDFAVISIDGTFLCTIMRPQITSVTQSFREMGVK GVETLLSQSIKQFKSLYTPIKITERQSS >gi|238617817|gb|GG669604.1| GENE 1246 1350404 - 1351813 1259 469 aa, chain + ## HITS:1 COG:NMB0388 KEGG:ns NR:ns ## COG: NMB0388 COG0477 # Protein_GI_number: 15676302 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Neisseria meningitidis MC58 # 18 458 2 444 451 435 53.0 1e-122 MIAKEQVGKIAGQAQVQSEAKPQHKGLPTLKLSTIFAMTFGFFGVNMAFSLQSSQMGRIF QTIGADPTKLGFFFILPPLAGMVVQPLIGKYSDQTWNRFGRRMPYLMIGAPIAALVMILL PNAGSFGFGYASLAALMFGAITILFMDLSSNVCMQPFKMIIGDMVNEDQKDKAWSWQQSF SNLGGVLATIFPFLLTWIGVSNVAPKGEVPLSVKMAFYIGAGVLLLTSLYTIWSVKEYDP MTYARYHGISEDKKKEKQPSLWHLVKTAPRSFWEVSFVQLFDWFAFQYIWTYGTGAIAKN VWNTSNPASAGYQAAGNWFGIMTCVESLAAVIWGFLVLSHTKPTQRKFWFRIGLIMGGTG MIWVFFVHSQMLLIVPFALIGISYLTMQTEALSLFTESLHGENEGAYLGLFNCGICLPQI IASVASFALFPLIGKSMPGMIVIAGVMMFIGALAVGMIHPAYSEKSATN >gi|238617817|gb|GG669604.1| GENE 1247 1351855 - 1353519 1634 554 aa, chain + ## HITS:1 COG:BH2903 KEGG:ns NR:ns ## COG: BH2903 COG0366 # Protein_GI_number: 15615466 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 1 553 1 557 561 623 56.0 1e-178 MAHKWWQDSVVYQIYPMSFQDSNNDGIGDLPGIQSRLPYLKKLGVDVIWLNPIYQSPNKD NGYDIADYEAINPIYGTMDDFDNLLEATHKNGIKLLMDLVVNHTSDQHEWFKESKKSRDN QYADYYIWRDPVDGHEPNNWGAAFGGPAWTYVKERGQYYLHLFAPGQPDLNWENPEVRQS IWKLMRFWLDKGVDGFRMDVINLISKPDGLPDAPAPANYATVESMVADGPRLNDYLHEMN DQVLSHYDVMTVGEMPSSKPEDAIEYTGLKSNELNMVFQFEHVSLSANPDKRLGKWNDAP VKLTDLKRALSRWQVELDGKGWNSLYWNNHDQPRAVSRFANDDPKYRVRAAKMLGNTLHM MQGTPYVYEGEELGMTNVHYTSLDQYEDLESINSYHELVDQNHDVDGQTMLKYLANVSRD NARTPMQWDDQENAGFSQAKPWFALNPNYKSINVASELEDPQSVFYYYQKLIALRHDSEL IRYGTYEEVDPEDSEVFAYRRHYAGKTLLVMSNFTDQTVIRDYDQASANELLISNYDDDQ GVKLRPYESKVYIK >gi|238617817|gb|GG669604.1| GENE 1248 1353665 - 1354309 787 214 aa, chain - ## HITS:1 COG:L0022 KEGG:ns NR:ns ## COG: L0022 COG0800 # Protein_GI_number: 15673608 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Lactococcus lactis # 3 212 1 212 213 209 53.0 3e-54 MSMNRLNSLKKIVDAGIIAVVRAETPEKAEAISKAAIKGGVTGIELTFTVPHADQVIGRL TKELPNGVIGAGTVLDTTSTRLAIMAGAGYIVSPTFDADIAKLCNLYQVPYLPGCSTMSE MQKALEGGSDIVKLFPAVVAGPSMIKELHGPFPQMNVMPTGGVNLDNLQDWFDAGAVCAG ASGNLVGPGAAGDYDQVTENAKAYMKKLNAIRNK >gi|238617817|gb|GG669604.1| GENE 1249 1354611 - 1356515 1788 634 aa, chain + ## HITS:1 COG:BH2723 KEGG:ns NR:ns ## COG: BH2723 COG3250 # Protein_GI_number: 15615286 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Bacillus halodurans # 8 631 4 614 1014 633 50.0 0 MSHEKIAQADSRWLDDPEVFRVNELPAHSDHRFYRNQDEIKRDQSSFVQSLNGDWRFSYA KDPMSRQKDFYKADFDSGNFDTIRVPGLIEFAGYNKIHYINTFYPWEGKEFRRPAFTMGP DQDEAGMFSKGKDNHVGAYVKKFTLNPDLQGHDVRIRFEGVETAMYAWLNGHFLGYAEDS FTPHEFDLTPYLTDGENTLAVEVFNRSTASFLEDQDMFRFFGIFRDVSLIAQPAVHIEDL SIKPTVNDDFQSGRLKVEAQFSGQQSGVVAHLTVVDATGKQVYETRSEVDSDVQLADTPF KTIHLWDNDNPYLYQLTITLTDKDGRTLEVVPYQFGFRRIEINQDKVIVLNGKRLIIKGV NRHEWDAKSGRVVTMSDMKQDIETFKKNNINAVRTCHYPDHISWYYLCDTNGIYMMAENN LESHGTWQKLGSVEPSYNVPGSVPQWQAAVLDRAKNNYETFKNHTSILFWSLGNESYAGD DIEAMNSYYKEVDPSRLVHYEGVFHNPKYKPTISDVESRMYATPTEIEAYLKDNPQKPFL LCEYMHDMGNSIGGMKSYMDLLDKYPMYQGGFIWDFIDQAVAVKDEVTGQKVLRYGGDFD DRVSDYEFSGDGLMFADRTEKPAMQEVKYYYGKY >gi|238617817|gb|GG669604.1| GENE 1250 1356502 - 1357464 815 320 aa, chain + ## HITS:1 COG:BH2723 KEGG:ns NR:ns ## COG: BH2723 COG3250 # Protein_GI_number: 15615286 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Bacillus halodurans # 7 317 728 1013 1014 147 32.0 4e-35 MANTNQLKVIYGDGTLGVGGDDFHYIFSYSRGGLESLVIGGKEWLYREPKPTFWRATTDN DRGNGFSKKSIQWLGADMFIDVKSIDVKVNNQLIDFPGAPLNNRYSNNEFADQIEIIYHY ETLTTPSTTVDVSYTVTPNSVIKVAVHYAGQKALPELPVFGMRFVLPTKAIDYQYDGLSG ETYPDRMAGGVPGVYQIDGLPVTKYLVPEDNGVHMETNWVTVTRNSTKNNADSSSVPFSL TFEKVDQPFAFSALPYTAEELENATHIEELPLPRRTVMTILGAVRGVGGIDSWGADVEPQ YHIPADQDIDFGFVIKRGSK >gi|238617817|gb|GG669604.1| GENE 1251 1357737 - 1357934 140 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509133|ref|ZP_03939182.1| ## NR: gi|227509133|ref|ZP_03939182.1| hypothetical protein HMPREF0496_1296 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1296 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 65 52 116 116 111 100.0 2e-23 MFRYSFDITFGLADCLFIQFVFELFKWAPKSSNLLSFFGATLTWAPSLIFIALVVDIFSG SSSDD >gi|238617817|gb|GG669604.1| GENE 1252 1358402 - 1359052 698 216 aa, chain + ## HITS:1 COG:L141530 KEGG:ns NR:ns ## COG: L141530 COG0657 # Protein_GI_number: 15673289 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Lactococcus lactis # 35 215 27 208 257 106 33.0 3e-23 MANLVVKTDVEYDSINHQKTDIYYDGDVKQAKGAIIDIHGGGWFRGNKSKDADSSKRFVE LGYLVVTPAYRITPVAYYPAPLEDMDHLFEWLKNSDLPFDHDHIGAFGSSAGGNMVVELA IKYGIPIVSLSGILDIDDWLGKHQDVVAAEGDTSGFNATASANINQTGANDPFYKWFVTN YFNGRTDQYEAATPYHRVTDQTGTMYLANSLNEFVC >gi|238617817|gb|GG669604.1| GENE 1253 1361487 - 1361969 467 160 aa, chain - ## HITS:1 COG:CAC2935 KEGG:ns NR:ns ## COG: CAC2935 COG0454 # Protein_GI_number: 15896188 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 4 157 3 153 156 95 35.0 4e-20 MTQIRPIESRDNSALAHIVQHSLKAYQLDIPGTAYFDPELSNLSQYYQSSPKRQYFVAST DNGDILGGNGIAEYDAKNRIAELQKLYLTENARGKHLSYKLLDAAINFAKHAGYKEVYLE THHNLKTAIHLYQEYGFSELGHPLNNGEHSAMDRFFVMAI >gi|238617817|gb|GG669604.1| GENE 1254 1362001 - 1362774 350 257 aa, chain - ## HITS:1 COG:PA2770 KEGG:ns NR:ns ## COG: PA2770 COG0384 # Protein_GI_number: 15597966 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Pseudomonas aeruginosa # 4 256 6 258 259 226 43.0 3e-59 MKSYIVDAFTNQIFKGNPAAVCILDSWPENDLMQKIAMENNLSETAFCVKENTGYRLRWF TPGGEIDLCGHATLATGYVIMNFIEKDRTRVTFETLSGRLEVAKNGDLYEMNFPSYDLKP VAVTQEMTDAIGTKPLAAYMARDLVCVLDSPDQVINAKPDLEKVRQLDGLLLHITALGEK YDSVSRSFAPKLAVDEDPVCGSGHCHLVPYWAKRLNKNKITAYQASKRSGILYCEYQGAR TILSGKAALYSIGEVYA >gi|238617817|gb|GG669604.1| GENE 1255 1362876 - 1363745 758 289 aa, chain + ## HITS:1 COG:BH2117 KEGG:ns NR:ns ## COG: BH2117 COG0583 # Protein_GI_number: 15614680 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 3 278 5 281 290 162 38.0 8e-40 MNRLLALQKVVELGSFTRAAEALGFTQSAISQMVTSLEEEMKIKLLDRSRNGITLTLEGR KIFSFIENILLQYQIMEEKVDEIKGLETGVIRIGTISSISCHWLPKLIKTFQEKYPKVEF ILHQGDYTTIPEWVKNGEVDFGFINPDVKTGLDTEFIKTGELRAVIPQISVLAKQSYVRL SDLAQEPFLQLEEGILSEPMEAFHRAGLNPDVKLCVHDDYSIMSMVESGIGVSILPELVL RKTNYNVKILPIKPVIKRKIGIVKKDKESLSLASQKFIKYLFTKVDTLP >gi|238617817|gb|GG669604.1| GENE 1256 1363856 - 1364296 313 146 aa, chain - ## HITS:1 COG:PA0115 KEGG:ns NR:ns ## COG: PA0115 COG2153 # Protein_GI_number: 15595313 # Func_class: R General function prediction only # Function: Predicted acyltransferase # Organism: Pseudomonas aeruginosa # 2 139 5 147 150 100 37.0 1e-21 MWVIKPFNQLTTKELFDILYLRTRIFVVDQKRIYQEVDTNDLKAIHVFKLVDGNIAAYAR IFEDDGQVTFGRVVTAPEYRGKGYGRALIDHIMQTIQTDFPNTPIKIEAQIQVESLYQKF GFITQGDPFIFHSTPHIRMVHKPLAG >gi|238617817|gb|GG669604.1| GENE 1257 1364306 - 1364740 171 144 aa, chain - ## HITS:1 COG:BS_ybfA_1 KEGG:ns NR:ns ## COG: BS_ybfA_1 COG1846 # Protein_GI_number: 16077285 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 11 139 13 141 141 69 30.0 2e-12 MLSQKEISLIREFNRDYTELLGLLNRQVFNTSLSWQEGRILLEIKINHLINPNEIATHLK IDKSYTSRIINRLVKQGFLEKVPSPEDSRSVQLKLTASGQQMTQNLDDRSNEQVAQLLSK LSIDKQAQFYQAVETINQLLFSRK >gi|238617817|gb|GG669604.1| GENE 1258 1364928 - 1366550 1617 540 aa, chain - ## HITS:1 COG:SA0849 KEGG:ns NR:ns ## COG: SA0849 COG4166 # Protein_GI_number: 15926579 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 4 539 2 538 551 341 37.0 2e-93 MGSSKQLKLLVGITCFSVLLVGCGKSKQSSDKQIIRTSIDSELTSVDLSKTTALNSFTVL NNVDEGLLRLGKNSKIEPGIAQSYKESKDGKTYTFNLRKNAKWSNGDPVTAQDFVYSWRR TLNPKTSSQYGYLFSGIKNADKIQANKAPVSSLGIKADGKYKLTVTLEDKLPFFKLLMGF PVFFPQDAKAVQKYGSQYGTSSDKQVYNGPFTLTKWTGTNLSWTLKKNPYYWDKKNVKLN QVKYSVVKDPTTGLNLYNEKKLDMDGLSNDQAKQYSKNKHIVTRNQSSSYYIAFNQKKKV FQNLKIRQAISMAIDRKVMTNKVVGGGAIQNDSFVSKGLAVSPKTGKDFTEDTTAPASMT YNLSAAKKLFKEGLKQEGLKSLSFTLMAGDDYSTKQLTEYLQSALEKLPGLKVSLNNIPA RVVLSRQADQQFQATVADWFADYSDPVTFLNILTSKNPSNISKWKNAAYDKLIAKSNGQD ADKPEARWNDMVSAQNLALKDQAIVPLYQSGEKWLINPKVKGIIYNTAGPNYNYKNAYVK >gi|238617817|gb|GG669604.1| GENE 1259 1366931 - 1367236 292 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509142|ref|ZP_03939191.1| ## NR: gi|227509142|ref|ZP_03939191.1| hypothetical protein HMPREF0496_1305 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0497_1168 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0519_2740 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0497_1168 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0519_2740 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0496_1305 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 101 1 101 101 143 100.0 5e-33 MNSNLKRLINPKFMKSFAIMYLVGVTMMILFSPVILTMAHFYEQIGYGILLVLLPLGWFH IFFNKDYATTRLLKLTDTLHFVVLAYGILYIAFVLSINFLF >gi|238617817|gb|GG669604.1| GENE 1260 1367631 - 1368179 395 182 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0627 NR:ns ## KEGG: Lbuc_0627 # Name: not_defined # Def: abortive infection protein # Organism: L.buchneri # Pathway: not_defined # 11 174 73 235 242 137 48.0 2e-31 MITVIGVLLILLLLVSGFPYRLLAMVHSNLFIANTLVALSAGVLEEFTCRGLLLSAFAQA FERNKYRYTWAAVVSGGCFGLLHLFNLLAGQALMTTLQQAIYAFVLGILFVAIRLTTNSL VWVMIIHFFIDWQPTISSEVMTGSGSPWGAFFIVWTPVLLIGLAFMIGFDKNVRWHSGLS FL >gi|238617817|gb|GG669604.1| GENE 1261 1368341 - 1368790 248 149 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509144|ref|ZP_03939193.1| ## NR: gi|227509144|ref|ZP_03939193.1| hypothetical protein HMPREF0496_1307 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1307 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 149 26 174 174 281 100.0 1e-74 MIYRKTGRFICQSLIMIGLLYFFNADGRMRFVFNFNWFNVWLFCSWVSQLFLVNRKTFYL TSQSLPTKGLSELKSERIRKRSPKDEWGFINRRKERLSQWQFMMQLHDDQWGLVINISLS LLYALLGPLIAGLFFLKDRYITSKYPHAQ >gi|238617817|gb|GG669604.1| GENE 1262 1368988 - 1369425 231 145 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509145|ref|ZP_03939194.1| ## NR: gi|227509145|ref|ZP_03939194.1| hypothetical protein HMPREF0496_1308 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1308 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 145 1 145 145 237 100.0 2e-61 MTMAYEIRGLERGTLSVLLILFFNVTNFSVSAFHINFNWYVDLVLLSFITVYPYVRYRLH RLYQWQLFSNRKSRLTTNVNQYRDRYLATARMPESNLRTLAYSSDGHYLWFFAKWLKNFL LDLIVMPLSIVLSVYFIFRSRFTNL >gi|238617817|gb|GG669604.1| GENE 1263 1369567 - 1369761 148 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509146|ref|ZP_03939195.1| ## NR: gi|227509146|ref|ZP_03939195.1| hypothetical protein HMPREF0496_1309 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1309 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 64 1 64 64 83 100.0 5e-15 MTIYLYILLMIGIPLIFALSLNLIGDKLIKNQDSKKMYIKSTRVFGPIAVVMYVIFFLMA VHLK >gi|238617817|gb|GG669604.1| GENE 1264 1369974 - 1370795 730 273 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0628 NR:ns ## KEGG: Lbuc_0628 # Name: not_defined # Def: peptidase M10A and M12B matrixin and adamalysin # Organism: L.buchneri # Pathway: not_defined # 1 273 1 275 275 221 46.0 3e-56 MKKKRLLASLLASLTVATALPFSLGSHFQTQAYAKTTAKKTVISRIQKTPDLNPTSSVRS FSKATYSQYKTTFNKEYNVDLMSKPSVFNHHQALVYTASPQLRKYLSVSMKTWNQALGTT VFKTGTSTNYTIRVGFGTGGQNGSLWDGLYRTNKLWVNKSHFNSNSYILTVLEAVSGKKV SKPKTAADKAAYDKYYRGFWEATITHELGHSLGLDHTPYLDDIMYAQSGESAGSIKYSWT TSKTGNGSFAGFTNKLSNRDINRAKLTKLLGYW >gi|238617817|gb|GG669604.1| GENE 1265 1370972 - 1372405 814 477 aa, chain + ## HITS:1 COG:STM3528 KEGG:ns NR:ns ## COG: STM3528 COG0226 # Protein_GI_number: 16766815 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Salmonella typhimurium LT2 # 160 476 198 514 519 214 37.0 3e-55 MKNRKRHDRKGFWWQLFRSLIVSPLIVGFIGVFGLGWWWAMIPALLLNGIYWYRYNKKYQ ITNFSNEIKAMIISLIYYLGIFSLIMIVYRYNYVAMSEYPLIAFAFPYNLSSLIAGAFLM YDLFPWLIIGTFWSGVLGAVYYQSVVGQFPKLGKRQMTWLIGLCLISLLPLYQQFAKNLR YVHTYSDTSSELNLKQFRPFMKKSHLASLGHSTNLRFVSHYPRLDGATAAYPIYSAIAQT LYKGMTAKQAAKIVRVGTTPQAFDRLIHKKADVVFMAQPSTKQLAAAKRADVKLKLTQIG SEAFVFFVNKKNPVNSLSVKQIQSIYQRKTIFWSSVGGRFETILPFQRAENSGSQTAMEK LVMRNHQLAKPLKYQEVDGMGGIIDDVAGYNNRTNALGYSFRFYTTKMKRNKNIKLLKVN GITPNMTTIRHGSYPFIAKIYAISRCHQTKNTQRLIRWVQGRDGQQLIDRTGYVGLR >gi|238617817|gb|GG669604.1| GENE 1266 1372456 - 1372947 441 163 aa, chain - ## HITS:1 COG:L126998 KEGG:ns NR:ns ## COG: L126998 COG0454 # Protein_GI_number: 15674038 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 2 161 3 162 164 151 46.0 6e-37 MKITFDHAQPQALSDIMRIEHTGFSDAEAATTEAMKDRIQLYPDTFIVAKNDQGQVVGYI VGPSFGQRYLTDELYEKARPNNPSESYQTVLSLVVDPSYQHNGIAGQLLDELAKVARKQG RTAISLTCLKKLIPFYESHGYKNEGVADSDHADEIWYNMVLTL >gi|238617817|gb|GG669604.1| GENE 1267 1373045 - 1374520 1288 491 aa, chain + ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 20 489 9 487 491 263 38.0 6e-70 MNHKTETLDKQQGPNKRWIIMTAVFIATFMTSVEVTIVTTALPAIISELHGLAFQSWIMS AYLLTTAITTPIYGKLADMMGRRNIFQWGVFVFTVGSLLSGLSPSILLLIISRALQGIGA GAVMPLTFTIIADNFSFKERATVLAFNNTAWGLSALVGPLIGGFLVDQLSWHWVFFVNVP LGIVVMLFVWFGYHEKVKLRKKLTIDWFGILWLAVCLVGLLLAIQVLDNQPVMALGLFII AAVSLWLLVRRERHFSNPLLSPKMFRSATFSIQIITATILSGVLIGYQVYFPIWLQSLYR VSATTAGLVVTSSSVMWLIASFFVGPLLAKYVPKRIAIVLIILMLLGYVELIVAGQSFPV WAFYVIAMVNGTGMGIVISMNTILSQHLVPPTMVGSATSILTLGRSLGQTVMAGVYGAIL NLMIRLNLHDGITFSQVNGVISSNHTHEVANRAMADPIILMALHAVFVSVVLILLIVIVI NWLDPNKKIIN >gi|238617817|gb|GG669604.1| GENE 1268 1374770 - 1376803 1441 677 aa, chain + ## HITS:1 COG:SPy1414 KEGG:ns NR:ns ## COG: SPy1414 COG3158 # Protein_GI_number: 15675333 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Streptococcus pyogenes M1 GAS # 5 654 9 647 666 612 49.0 1e-175 MNKQLERVSFAGMLVTLGIVYGDIGTSPLYVMNALIGDAGKMGNISPDYVIGSISLIFWT LMIITTLKYVIIAMRADNNHEGGIFALYALVRKNAKWLIFPALIGGAAILADGTLTPAVT VTSAIEGLKNQHLGPVTFSNSQHDVLLITTVVLLLLFVIQRFGTGTIGQSFGPVMVLWFG FLSVFGVINLLDYPMVLKALSPYYAIEILFSPVNKVGIFILGSIFLATTGAEALYSDMGH VGRKNIYATWPLVYAALFLNYLGQGAWVINHANDAAYRNLSDLNPFYEMLPGNWRLFGIV IATLAAIIASQALITGSYTLVDEAIGLKFLPRLIVKHPSNVKNQIYISNVNWLLCIVTLA VVWYFGNSQKMEAAYGLAITITMLMTTVLLYEFLKGSLRKGIALTIALFFGMIEAIFLIA SLVKFIHGGYVTLTIMLAILYIMWVWYFGNKRREHYERESEYVSLLDYRDQLKELSKDED VPLFTTNLVYMTKIKGDYQIKRSTMYSILDQEPKRAKVYWFVTVNETNVPYESNYTVDML GTNNIVNVQLYLGFRKSQSVSVYLHQIVDHLVDQGILEPQVPKYSTQRKRKVGDFKFVII NEQPADLVANDQIGSLDKRLISGRIYLQNITASPTSWYGLEFSNVVEESSPLFIVQEKDQ YLVQRKIYHYVDDKTHQ >gi|238617817|gb|GG669604.1| GENE 1269 1376981 - 1377337 358 118 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0631 NR:ns ## KEGG: Lbuc_0631 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 117 1 116 116 146 67.0 2e-34 MTNTTDWKAALNSKEDFKNFITDYFAKHEELTGNYENTSYYEYYTVRLDSKAGLIITLTT GINTTGNLGVSPVPFKDVERLSVEQFRQLILNKKFADMHTSLADVFKTVAGVPDAMKE >gi|238617817|gb|GG669604.1| GENE 1270 1378018 - 1378965 921 315 aa, chain + ## HITS:1 COG:no KEGG:Htur_2076 NR:ns ## KEGG: Htur_2076 # Name: not_defined # Def: hypothetical protein # Organism: H.turkmenica # Pathway: not_defined # 1 314 1 313 314 393 61.0 1e-108 MSAYLFVHFKEKRTPDGEQVYFGISRDGYKWETVNDAQPVLWSYYGDKGVRDLSINQTQD GRYIILATDLSLSYGMLNQYHNSWTEISEHGSKKLVMWESTDLIHWSSQQMISIEGANDF GVMWAPDVVYDSQNNDYIVNWSSSTMQDNYGPKAIYYSRTSDFKTFSKAQLLYRKSDSEV IDSAMYEEDGWYYLFVKSGANPETIILLRSQQSTGPFERVSNFDDGMNRIQRGKYEAPTA VRVEDQWLLFLDYYGTGAEGQGYVPFIGKTLSAGKFVRSDQSFSFPYGFKHGTILKISDA DFDRLKAYHKKPSEY >gi|238617817|gb|GG669604.1| GENE 1271 1379161 - 1380066 602 301 aa, chain - ## HITS:1 COG:BH1869 KEGG:ns NR:ns ## COG: BH1869 COG4189 # Protein_GI_number: 15614432 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus halodurans # 1 296 1 300 313 292 48.0 5e-79 MDLDISDKSIPVFAALDSKVRVHIIKLLSEKKMNVSEISKAIGLSSPITIMHLNKLQEAN IIRTEKKGNQRISSLRVDTINVSFPQQLYIPYENWDIELPIGQFTDYDVQPSCGLAGQDG FIGKVDNPSYFMDPERYKAGMLWFSKGFVEYQIPNYLKDNQQLEMIELSAELSSEFPFSN NNWPSDITVSLDGHEIGTWTSPGDFSDIRGRYTPKWVYNDMNQYGMLKSFRISKHGSFID GQHATDTLITDIDPTKNSWTLRFEVKDTAKNVGGCTIFGKKFGNHDQGIKGIFYFSDIED Q >gi|238617817|gb|GG669604.1| GENE 1272 1380518 - 1381969 1408 483 aa, chain + ## HITS:1 COG:BH1874 KEGG:ns NR:ns ## COG: BH1874 COG3534 # Protein_GI_number: 15614437 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-arabinofuranosidase # Organism: Bacillus halodurans # 2 483 4 497 498 538 53.0 1e-152 MSIELLNQKKGPEISKYIYGQFSEHLGHGIYGSLYVGNNSDIPNVNGMRSDVVDALKQIH VPVLRWPGGLFADTYHWQDGIGPKDTRKKIVNTNWGDVTEDNSFGTHEYFELLRQLGADA YINANIGSGTVQEMAEWVEYMTMAGESPMSKLRQKNGRQDPWKLKFFGIGNESWGGGGNM RPEYYSDVYRQYQTFLPQYDKDHPIYKVACGPNEADYNWTDTVMKLAGQYLDGISLHYYT LPTGKWGWDKGDATDFPEDQWQSTMVRAEHMDELITKHSTIMDHYDPDHKVDLIIDEWGT WYDVTEGTNPGFLQQQNTIRDAMVAAITLNIFHKHADRVHMANIAQMVNVLQAMILTKGD KMIKTPTYYVFDMYQKHMNAELVEGVGDVPENVTYTASQKNGQLTISITNYDLTDEKTVD FTAANAYNQIESATILTAEEMDAHNTFENPDVVKEAKFEGATLVDGKLLLELPAKSVVTI TLK >gi|238617817|gb|GG669604.1| GENE 1273 1382079 - 1383365 1389 428 aa, chain + ## HITS:1 COG:CC2315 KEGG:ns NR:ns ## COG: CC2315 COG0477 # Protein_GI_number: 16126554 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Caulobacter vibrioides # 63 428 47 418 418 108 25.0 2e-23 MANKNDKEKKEAPVEPTNAKVKNAEQPKFPKLFGLAMLLGPFVWLAPASNVRNTLLPQYF SQIDPSGKIAAIALMASVSSIVAAVANILFGGLSDITRTRWGKRKPWILGGTIVESGLIC VVANLHDIWAIVVIWGFVAAAENAVAAAMVAQEADRIAPRWRGTISTLYGIGYTAIQVVT MIAAQFLGNPKMGMYVMAAIGFVMGIIHVLFAHEGSNLDEPREKFSFKSLWLHFSLPTKG ARDYWYAVAGKLMMVMGGTIATAYMLYILTDYMHLGQQSAGKTLSEISLINLVFGVVFTA ISGPVADKMGRLKAPVALSTLLIGIAQFFPFFDNKPWTILTYAVLAAIGNGVYNAVDGAL NLAVLPNAETSGKDMGFINLANTLSQISGTVVASLIVTYLGGYKAIFPASFVIELIGAIL IFRIKSVK >gi|238617817|gb|GG669604.1| GENE 1274 1383496 - 1385796 1531 766 aa, chain + ## HITS:1 COG:CAC3436 KEGG:ns NR:ns ## COG: CAC3436 COG3534 # Protein_GI_number: 15896677 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-arabinofuranosidase # Organism: Clostridium acetobutylicum # 19 706 54 764 835 449 37.0 1e-126 MARCKLTIKSDFGVPLNDLFGIFFEDLNHAADGGLYAEMVQNRSFEFEPVDHEGYHETYA WEINHPDQAVISSDQPLNSKNLHYLAVKSGAEDLTVTNRGFNQGMFVQEDHTYLFSMFAS AKEKGMVQVFLENSQHQQLSPTAVIAVDVPGWKKYQVVIKANQDSIEGRLVVKILPNSHL NLDMISLFPTDTFHHRENGVRRDLGEALAAMHPKFMRFPGGCLVHDGTLDPNDRESMYRW KNTIGPVEKRPTRRNKWGYNQTLGLGYYEYFQLAEDLGAKPLPVLPGGHDPHHKRAVPID QLQPWIDDALDLIEFANGDTDTKWGKKRAELGHPKPFGLEYLAIGNEEVGQAFFDRYPYF HKAIRERYPNIKLINTSGPFASGSEFDRGWKSAKENGSDFVDEHYYMSTDWFLANQHRYD HYDPKGPKAFLGEYASKENKWYNAVVEASYMTGLERNADKVGLACYAPLLANVDYIDWDP VLIFLNQHQIAPTVNYYVQQLFMTYQGTHNVQYSIDGLSDPVVKDDQPITGQFGFEGDLA EVTYNNVTFTDRKSGNQQDFNGGQLLERKRQLIGQTDSDDYTLSFDATKTGGRPDKGFHL IFGQASDPDYFMWVLGGWENQDSIIKQRGAHGMESDWDQCQWTMESDHQYHFDIHVHDRQ ITTSIDGHQFNEIEIMPTVIQPLYSNMTFDEKIKSYYLKLVNVTDKPVTILLKDTHFQNG QYRELSADPETENKIGESNNLKINKTTVDGSSIRVQPYSVNVLISK >gi|238617817|gb|GG669604.1| GENE 1275 1385821 - 1386015 217 64 aa, chain + ## HITS:1 COG:no KEGG:MPTP_0197 NR:ns ## KEGG: MPTP_0197 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 5 64 4 63 883 62 46.0 5e-09 MRETIPLKDVRISDPEILNAQRNAVHYLLTLDPSRFLYGFNQVSGLKPVAAKPYGGWERL EGPN >gi|238617817|gb|GG669604.1| GENE 1276 1386340 - 1386624 75 94 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1953 NR:ns ## KEGG: Lbuc_1953 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 85 77 161 803 130 71.0 2e-29 MSQAIDSVSDDDTRSQLLSKLRIGIEGLFRAQQAYAKSHPQSAGYVSAFREVALDEVEGK RVPESEKENVIVPWYNLHKILAGLIDGYEHLKKN >gi|238617817|gb|GG669604.1| GENE 1277 1386716 - 1388536 1404 606 aa, chain + ## HITS:1 COG:CC2550 KEGG:ns NR:ns ## COG: CC2550 COG3533 # Protein_GI_number: 16126789 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Caulobacter vibrioides # 1 574 240 759 786 227 29.0 5e-59 MLKVEYGGMNDALYHLFSITKDERHLTAATYFDEVELFKDLAAAKDVLPGKHANTTIPKL LGAIRRYEIFDDPQMAGQYLYEKDQKQLPIYLKAAENFWRIVINHHTYATGGNSQSEHFH DPNQLYHDAVIEDGATTCETCNTHNMLKLSRELFRVTGDKKYLDYYDRTYSNAILGSQNP KTGMMTYFQPMAAGYRKVFNRPYDEFWCCTGTGIESFTKLGDSYYFKEGQTLYATGYFSN QLSLPKENLKLDMQVDRKVGAVKLTVSKLIDNKTSEPLNVKFRHPDWSHGRLSVKKNQKT QPNNETFGFVEVKKLVPGDVIEINLSMTLTVGSTPDNQQYISLKYGPYVLAGKLDRYQMD SDRPNGILVRISTLNQTATSTLTAHMDWPSWQKKAHADYQLQTENERYLVKVGLPGVDEK IEFVPYYQVYDQRYGVYFQWQQAGSLAAKQRQEKLAAIEAYQNRIVDQLTNFDQNNWEFN KHLQAKNSEVGNAYGRRFRQAGVTGYFSYRFDIKKAQPKMHMILIFNKSDDGKLLATHIG NDPDNQFQSQIVVDSSNAKSVDKDGFFELEIELPKDIYLDQPSLKICFSGLQDTSARLFG IQFLNA >gi|238617817|gb|GG669604.1| GENE 1278 1388585 - 1388959 354 124 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0621 NR:ns ## KEGG: Lbuc_0621 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 4 120 3 121 126 152 61.0 6e-36 MTEVNATEWRNAIKSEKAFEDYIRKYFEANQELVGNYETPSYYEYYTVTLNSKEGLVVTL KTGLNQQANAAALPFKDIEHLSIEEFRQLILNKKFEDKTETLTDVFANIMATDPTARFNK KGRK >gi|238617817|gb|GG669604.1| GENE 1279 1389746 - 1390522 562 258 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1982 NR:ns ## KEGG: MPTP_1982 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 1 254 35 280 383 328 60.0 1e-88 MITIATKSIFSDTRQPNFLYGKGLLTTHSDEQHNGRLYATCEHYVNGVPNFPIFESIDHG QSWQHISDVSDQVNGWGMRYQPFLYELPEKIGNLPMGTLICAGNSIPKDMSATKIDLYKS VDHGQSWQYLSTVVQGGTASVKDQKPVWEPFLIVINHQLVCFFSDERDKKAHSQKLSHKL SRDGRHWGAEIDDVAVSNPEARPGMATVARMANGNYIMTFEMVAEGAIVVNGERNRSNFK ISQNGLDWQPTDPGTLAS >gi|238617817|gb|GG669604.1| GENE 1280 1390568 - 1392955 1060 795 aa, chain - ## HITS:1 COG:no KEGG:BT_0264 NR:ns ## KEGG: BT_0264 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 39 593 41 579 582 185 29.0 8e-45 MHTQKQAINRIILTALGILLLAITFITAPKVSASGENSFALTGNIFINSTTQLANNVKLH WQVEPGADHYVIDKSVNGTDFNQIQTTTATTSDDNHVNEGAVFYRIRAFNNNNQQIGQSN IIKESIQQDITLSDSYSNTGISQFHGKNAAFKVNDVYYRYKLTVESHKALLEEASSNDGT HFTDFKPVTIKNDSELGACKIESVSIEMHNGVIIVWGHYENATDYSLGRMICISGKPGQP FINHGSFRPKTPDGTEYQSRDLSFFADPNGKDAYLISAASSKSGHANQNTNIYKLNSDWT GIDPQFNPIIANKGLGREAPSMIKKDNWYYLFTSKANGWYPSEGGYNSATSITNLATSKL QPIGNTSGYGAQSGGVGQLSDQPNSPYFTMANRWSAGWKYPDPAIDNKNASRMFLVDMDN GFAAFDYYPTVKYDVGKDKIVPVQNGEILSVNKPAGQVAGDTSAVKDRGPQKANDGIVAD STNAYQPQTSDGQYNWTVDLGKSYHINEVDISFKYIGGSETYSKYLIQGSNDGKSFTTVK DNIQNRIIGFKENVISSSNDYRYIRLKVLGTYKASDDSLQNWAAGFNELTVYGSDVSTSI PSTPSQQTEATLTPSASVSSSMPVVTPSSSSRSSIKTTSPSAAPSETRIHDIKPFWLYLK KSAYLYNSATFHKSNRIKKYHVSSRVFGPTFKVVATAKSVNGVLKYKLSTGYYITANPKY VTNLYWQRFRPKLIVINSDGVNSFYSKNLTKKEAHHKKKAVLKIRRFLRRGSKTVFQLSN GSYVSGSKKLVGILK >gi|238617817|gb|GG669604.1| GENE 1281 1393300 - 1395900 1632 866 aa, chain + ## HITS:1 COG:no KEGG:Sked_04330 NR:ns ## KEGG: Sked_04330 # Name: not_defined # Def: putative carbohydrate binding protein # Organism: S.keddieii # Pathway: not_defined # 111 673 411 932 1197 412 44.0 1e-113 MFGKIKMGYKIGLTLFALTIGTLICSIPMVSAAESSPVTQVTASNSNKTVIDKSKLVQAV ADAQTYKSSIGNDAQISQDRYNRALNMATALEKQPSATQDQIDSATTLLNSAISENSLFP KQENPNRYTSVPVGQKWLDTQGAPIQAHGGGFLKQTQANGRPIYYWVGEDKSQNNSRFNG ITLYSSTDLVNWTYRKTILAPSLTDKGLENATIERPKILYNAKTKEYVVWAHWESAGGYS SSQICVATSKTIDGDYQFLGHWRPGANATNRNWRVTDQSATFDKTGQPISDYSDESTWGT GSRDFTLFQDGDKAYIVSTQDGSNMRIYELNADFTDVDKNAMKSYLVFPGARREAPALVK DGQYYFMINSSQSGWYPNQARYSYTKNLSDENGWESSTTPSGAKVPAGLLGNNSTYYSQP TGIMAVNGTKQTSYIYMGDRWNPDKLGESTYVWLPLTIKDPSSDNPSMSMAYTPGWQLDN ATGEITTGNDQLLSQGKPATTDAAGSVATGDFGLNQANNGDAMNLNTSGGNSTYFKPIGK DGQPQVPFTYTVDLQKSYNLSHADVSFNLYNGSESFSQYTIETSLDGRTWQKAADESANT MVGFVSDKLSGRARYVRLNVSKVLKVGKSPQNAAWTAGLVEFQVYGTPIETGGTTTPAPS TPPATETGASSSSSNIGASSSSVSSTSSSAASSSTDSGSTTVTTKKKRTKYPFKIYAKKS IYLYRHTDFTKKNQLTHYQKKSRINADTFTVVGTARSRNHALRYKVRDTNNKSRLFGKVG YVTARPSYVARLYYQTLPKSKTITVIAKKGVDVYRSTKQSNRINHYKRGTILKIKKIIKN NKVTNYQLRNGNYVTGNKKIVIQGKY >gi|238617817|gb|GG669604.1| GENE 1282 1396164 - 1397141 841 325 aa, chain + ## HITS:1 COG:SMc01702 KEGG:ns NR:ns ## COG: SMc01702 COG0667 # Protein_GI_number: 15964217 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Sinorhizobium meliloti # 1 325 1 328 328 282 46.0 8e-76 MEFRKFGKTGFSISDVSLGTWQLGGKWGTPFDAKDAYDTLSEAYDHGVNFFDTADGYQDG KSEKTVGKFINSHPDVHFTTKIGRKEEPLSVEHFDAAHLTRYVDESLKNMNLETLDCVLL HCPPMSVYYMPETFFTMDQLKKEGKIKHYGVSVERVEEAIKAMSYDISAVEIIFNMFRLR PADLFFDLAKKNNIGVLARVPLASGLLSGKYTANTKFAPEDHRTNNRNGQHFSKGETFSG VDYLTGVKAADELKERLGTDNLAAMALRFILMYDAVSAVIPGASNPNQIERNTTAAELPA LSDDQMAIVRDVYDKYIKDPVQYLW >gi|238617817|gb|GG669604.1| GENE 1283 1397344 - 1397784 526 146 aa, chain - ## HITS:1 COG:L103195 KEGG:ns NR:ns ## COG: L103195 COG0589 # Protein_GI_number: 15674218 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Lactococcus lactis # 2 142 5 143 145 87 35.0 6e-18 MYEHILVPLDGSENSRKALDVAIKLAKTFSSKLSLLSIVDNRNFAMPATAAAAPNSSYSE LTSYAHDIVDDGLKTVKENGLDAETIVTQGYPKSVIATDVPKQNNIDLIVIGKSGRGAID RFIIGSTTAYVVRNATVQVLVVSDDA >gi|238617817|gb|GG669604.1| GENE 1284 1398034 - 1398492 406 152 aa, chain + ## HITS:1 COG:SPy0477 KEGG:ns NR:ns ## COG: SPy0477 COG0494 # Protein_GI_number: 15674593 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pyogenes M1 GAS # 1 134 1 135 158 118 41.0 5e-27 MAIDYVSMIRSLVGHTPIIMNTAAGILLNGEGQVLLNLRTDTHNWSLPGGYLEYGETYAQ ACVREYKEDSGIDVDIIRFLKIFDKGEVRYPNGDVTQTISALYHVKQIGGQPLQSETDET VKLAYFDFDKLPPLLNQQTADMLDYASKNIDH >gi|238617817|gb|GG669604.1| GENE 1285 1398506 - 1399450 701 314 aa, chain + ## HITS:1 COG:PAB0514 KEGG:ns NR:ns ## COG: PAB0514 COG0111 # Protein_GI_number: 14520969 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Pyrococcus abyssi # 4 302 5 307 307 242 44.0 8e-64 MSKKVVVPKSLSEDGKKFLTDRGIDIIEVDGNFTDGLLEHGRDADGMIIFLDHVGEAVLS QMPNLKIIARHGVGYDSIDLDASAQHGVWVTNTPNANAATVAETTLAEIFDLSKNVTKAS SEMRKGNYTYALAHRGFDLAGKTLGIIGYGHIGQQVAKKASALDMPILIYNRSKKESPYG KFVDLDTLLKTADIVTLHLASNPATHHIIGKDQLAEMKRSSVLINLGRGGLIDTSALINA LKTHQIAGAALDVFEEEPLPLDSDLFQFDNVLLTPHIGSSTVESFSRMAVDAASEVVRVL NGEKPQWPVNEPKK >gi|238617817|gb|GG669604.1| GENE 1286 1399553 - 1402303 1651 916 aa, chain - ## HITS:1 COG:L111162 KEGG:ns NR:ns ## COG: L111162 COG0577 # Protein_GI_number: 15673086 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 2 916 6 896 896 665 39.0 0 MKSILRKNIFREFRFSFARFISIATLLGLGVFVLIGLKVTGPDMRTTGNDYYTAHKMADA VINSNTGITKADQAYMRQLPHVKKIEFGTSKDAIIKGTNDSIRLNSKTDNLSINQTISGR LPKTKNEIALSSNERSRYKIGETLRLVNNHNQSRISGLKNASYKIVGFVTSSDYLMKENL GATSAGTGQLSTFGVVVKDVFTSTQPTIARLSYNNVHGKSYTDKYEKQVQSNVDNAESRL NNRAKGRRNQLRSSALKKIENKKKELATQQTKLNQSKKQLSAASKRLKSSKDQLSRAQST GRIPVGQLSAQQNQLATQTAQLKASYKQLAISQNKINRARQIMIDQRQAINRFPAIIYQI QSRNDYNAGYNQFGENAKRIDVLSNTFPIIFFAVAIFVSLTTMSRMAEEKRQEIGTQRAL GYTKFDTMKVFLIYGTLAGLLGSIIGAWLGTGLLPRKIFDAYAANFVIPNFQTPPSGFWI GISILISLICTITPAVWVTSKMLKDQPATLMLPKPPKSGSKVLLEHVPFIWRHLSFNYKV TVRNLARYKGRMLMTILGVLGCTALLITGFGIRDSLNGIVNTQYQNIIHYDVIGIFNSHA SQTKQNDYKKAANNLSGVKHETTVYYESVTSRPKGMINNQNISMIVPKSAHNFDKFVTLK NPDTGNTLKLSDKGAIITRKMATLSHLKVGDKLTIKETNGEKHQVKIAGITEMYAGHSLY MNANYYHKAFDKRATYNAKMLMLKDRSSKNIDRVSRQLTRLDASVTAVQSDDAKATINHI LAGLNHLVLIIIGAASLLAFVVLFTLTNINVSERIRELSTIKVLGFYPMEVVMYVYRETF ILSLAGVLSGFVGGSWLHNYIMQTLPPETAMADMTLLWTNFTTSGVMTLLFSMIVMAIMA YKIQRVDMLGALKSVD >gi|238617817|gb|GG669604.1| GENE 1287 1402314 - 1403018 181 234 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 198 1 194 305 74 26 1e-11 MMAYIDIIHESKIYGSGEREVRANDDVNFTIQKGELTVIVGASGAGKSTLLNILGGMDSP TKGQVIINSKDISKYSSRQMTTYRRKSIGFVFQFYNLIPNLTAAENVELAAQISPHSLNV QDVMAEVGLNQRMANFPAQLSGGEQQRVAIARAIAKNPELLLCDEPTGALDYKTGKSILT LLQNFSRRSGKNVIIVTHNGMIKPMADHVIEIGDGKVKQDVLNPKPTPIQQIEW >gi|238617817|gb|GG669604.1| GENE 1288 1403313 - 1403924 569 203 aa, chain + ## HITS:1 COG:SPy1258 KEGG:ns NR:ns ## COG: SPy1258 COG1309 # Protein_GI_number: 15675217 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 9 189 7 174 180 76 30.0 3e-14 MAVHQKVIQTERKIRSAFIYLAETKGVDRMTVSDITKYAKINRSTFYAHYQDKFAMIDHF ENQILTDIQNLMKNNLTDTMTYQDLSSGKPQTYPVVDKIIQYIDREFNLIRVLLGPKGDG RLEERVKQVLTEIIDADLFRLKGEMGMTKQIPANFAHEIIVSGLMSIIKVWLAEGNPESP KEISEIIMKTRYMSPFDILGVEE >gi|238617817|gb|GG669604.1| GENE 1289 1404096 - 1404332 323 78 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0638 NR:ns ## KEGG: Lbuc_0638 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 78 1 78 79 111 67.0 8e-24 MTTIYVNPDKKQDQIVKLSDGSYGVMKAKKERAGIAYQFNFTSHQHPGFVISHAPVNGDV ENVDSIDGKQTFKIAWRS >gi|238617817|gb|GG669604.1| GENE 1290 1404931 - 1405902 965 323 aa, chain + ## HITS:1 COG:BH0935 KEGG:ns NR:ns ## COG: BH0935 COG0604 # Protein_GI_number: 15613498 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Bacillus halodurans # 1 321 1 318 322 118 27.0 1e-26 MKAAYIKETGSSKNIIIGDLPEPEIGADDVLVKVSAVSVNHVDTFVRAGSYQTNLNFPFV IGRDAVGEVEKVGANVDRFAIGSQVWTNSMGYDGRQGTTSRYVAVPADRLFHIPSGVDPI KLVASVHSSATAAILINHVFQAKSGDTILVEGAAGHVGTKLVQLAHTMGLRVITTSNEAD FDKMDRFGSDLALDYKKSLTKQLEKHAIDGVDFVVDTSGKVALQENINALNERGTIGLIT APEDNKFTFNVRKFYTTDKAIRGFVLSHATIDQFTDAAKLLSQRMVDGFLLDDDIVEKPI EDAAQAQHALETNAVKDRLVLKF >gi|238617817|gb|GG669604.1| GENE 1291 1405994 - 1406728 244 244 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 7 239 4 238 242 98 30 7e-19 MGKLDNKVAIITGASQGMGASHAKLFAKEGAKVVITDINEEKGNQLAKELGNGSIFIKQD VSSEDDWKNVIKTTLDTFGKLDILVNNAGISFNKSLEDITTDDYMKIFKINQLSVFLGTK YAAEAMKKNGSGSIVNISSMNGLVGGAVGYTDTKFAVRGFTKAAALQLAHSGIRVNSVHP GVISTPMIHQGDSEAVIKEFAKAIPLQRVAEPEEVSKMVLFLASDDSSYSTGSEFVIDGG LTAQ >gi|238617817|gb|GG669604.1| GENE 1292 1406894 - 1407154 359 86 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227512064|ref|ZP_03942113.1| ## NR: gi|227512064|ref|ZP_03942113.1| hypothetical protein HMPREF0497_1186 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0497_1186 [Lactobacillus buchneri ATCC 11577] # 1 86 25 110 110 162 100.0 8e-39 MLEDNSNYDLFQRLHPHCFSEAMVAHYAKEELERRADNGDGEAKMLLAIRESELREEDNS IKKRGPIQQFKHSAPTLKVIFRMRLS >gi|238617817|gb|GG669604.1| GENE 1293 1407307 - 1407495 76 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSSEVCIILNSNDYDLTKWRQTTMEKQDLASARRRMKSPNIKTRKRALRIIHEYKRHQKG IR >gi|238617817|gb|GG669604.1| GENE 1294 1407547 - 1407873 241 108 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509181|ref|ZP_03939230.1| ## NR: gi|227509181|ref|ZP_03939230.1| hypothetical protein HMPREF0496_1344 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1344 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 108 1 108 108 207 100.0 2e-52 MDRGYLDEQELTDLTYGKVFIGNNGVLARMPDDPVDDDRLYLHHNGANFTLYQASKSDIR ILINTIDGVTTAISNYPIKENQYGCLYVDHPSIQNNLTVRQAQDLFIQ >gi|238617817|gb|GG669604.1| GENE 1295 1407955 - 1409151 1171 398 aa, chain - ## HITS:1 COG:SPy1093 KEGG:ns NR:ns ## COG: SPy1093 COG1686 # Protein_GI_number: 15675077 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Streptococcus pyogenes M1 GAS # 131 392 31 291 411 152 36.0 1e-36 MKINKWLRTVMISCATALTFGIGLGLQSQSTQVEAATPTYKVVSTTSMTKAPYHKKSSAG AIWNASHTKQVATLKGYPYTTWYATKKASIKKSGGSTALYYQVKNGSGSVSGYVWHNYVT PGKAPFGLKYAKGAVALDVNTNGVVWSKNANTPRPIASVSKLMTLYLVQQKISNGGGTWT SKVNTSNAGLKKLGKDSTFGGFKFTKNSYTVRDLYLAALIESSNNAAIALGQWVAGGSTP TYNKKFISMMNAQAKSWNLSNTSFVSASGMEQNSLKPFGYSIGGANANMVSAADVAQIAR HLITDYNDVLKDASIGSMSLDGQKLYNYNNLLPGRKYYQKSLNVDGLKTGYTDPAGYCFV GTGRKSGHDRIITVVLHDENEFTETRSLMNYVYNKNLA >gi|238617817|gb|GG669604.1| GENE 1296 1409736 - 1410614 717 292 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1799 NR:ns ## KEGG: Lbuc_1799 # Name: not_defined # Def: lipoprotein # Organism: L.buchneri # Pathway: not_defined # 33 292 23 272 272 162 46.0 2e-38 MRHKKLIGLAAGLLLVIGGLSGCNSNKQSKGSNDNDSTVSKSSKTDMQNASSQSSSSDSS QAQSSSAQSDSTTSAGSSSTQATTGSRISNLNNQVINKIGNITLPSDDGLSSGSNNLNMR YNGTQSDYTIYYSVGNQALDLNASGVSNETPYATFQKKTYSSESTAASAVDYSQASTNKG LPKVKLSSKITGYENAGGGQRYIAWHEGRWSIAVHGSVVNNTNPKQTAIHAVNLFDHYML PAPQKYGAIELNVHSSSDHTRDQSITWQDGLSVYTLKGVDIDTAVQMAASAK >gi|238617817|gb|GG669604.1| GENE 1297 1410627 - 1411289 684 220 aa, chain - ## HITS:1 COG:no KEGG:LPST_C2308 NR:ns ## KEGG: LPST_C2308 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_plantarum # Pathway: not_defined # 27 219 11 203 205 92 31.0 8e-18 MTFKKKLIGSLIAVAGTASLTFGGYAAVSKTVFHANIGISSTQQTPAPQNLTVDGNKLTA SITNSDPKDYKLDYNDSNNNRHATFEMQTYDDAQSAADSLNYFGQQDGTKDKLKDGKQAT SQGTLGHVYTHWNQGNWSITTVTPSEAAGGPNPATFASQVASQLSQYPLPSENVNHGAIV LYPTNESELANTVRWQANKRVYQVTSDQSNLAIQLSHHAN >gi|238617817|gb|GG669604.1| GENE 1298 1411304 - 1412242 839 312 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1800 NR:ns ## KEGG: Lbuc_1800 # Name: not_defined # Def: glycoside hydrolase family 25 # Organism: L.buchneri # Pathway: not_defined # 4 310 9 306 307 290 57.0 5e-77 MIKRKIAYCLATLGVSIGIIGAATTNSKAASSAIPDVSEWQGKMTSLQAQNLKNQVSFVI NRRQYGSSYVDKYATNNTALYVKYGIPFGEYDYAMFTSPASAKTEAKNFYNRSNKSAKFY VLDYEQNNVTSGSSKAAVLAWYNEMRSLTNKKLVFYSYQSFATQYAGSARNNFDAQWIAN YSAKPTIATDLWQYTNKYYLAALGKYVDNSKVVTHPASWWTGTSIASTALADTSAVTTPK YYHALNAAKQVTVNKKIYLYDSKTFSKANRVKTLSAGDSVSIQSVTKRSTGSYYFTTTTG QYITANRSYVNE >gi|238617817|gb|GG669604.1| GENE 1299 1412545 - 1412616 75 23 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRLRFTPKVASFSSAPVRFKDVL >gi|238617817|gb|GG669604.1| GENE 1300 1412640 - 1413656 798 338 aa, chain - ## HITS:1 COG:TM0067 KEGG:ns NR:ns ## COG: TM0067 COG0524 # Protein_GI_number: 15642842 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Thermotoga maritima # 1 328 1 328 339 249 38.0 7e-66 MLVTTFGELMLRLTTPDTFRFSQVTHLETNFGGAEANVAVLLNQLGDQVTFVTKLPENDI ADTAINQLRGYGIDTSFIARGGDRMGLYFLQRGTGIRPSSVIYDRAFSAFATSRKSDYDW DMLFMRTNYFYISGITPALSNELAQTVLDSAKYCHQHQIKVVYDANFRGKLWTSEAAIAF NRQILPYVDICFAHDEDLGPAFGFSIEQSDATTFANRITEYKRSLKKLTANYPNLQTVAT IVRDTGTTSSRWASLLCQDRHFYQSPSYLVPTDHEVASGDAFGAGIIHGIINGFSGQEQL DYAIAAAILKLTIPGDYALLSDKEIKAVINKGDQNILR >gi|238617817|gb|GG669604.1| GENE 1301 1413906 - 1414607 519 233 aa, chain - ## HITS:1 COG:lin0656 KEGG:ns NR:ns ## COG: lin0656 COG5523 # Protein_GI_number: 16799731 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 1 181 1 164 345 95 36.0 8e-20 MNRAALKEDAKSILNSHFSFYFLLFLPAFILEVIGGIIFGINATDYLEPSDGVSTLITWI AALLAIGMSFVCLDAMREKLTYENPLQKSMFLFHNGDYFLGTLLISIIQYIFVILWSILL IVPGIIKSMAYSQSFFIYRDAIDHGEHISYTDAITRSRQMMDGHKWEYFVMGLSFIGWLI LVSVTAGIAAIWVQPYMSLSFANYYNELSREQNAKDGHVEDHQAPTSEASENN >gi|238617817|gb|GG669604.1| GENE 1302 1414702 - 1415106 317 134 aa, chain - ## HITS:1 COG:no KEGG:LVIS_2008 NR:ns ## KEGG: LVIS_2008 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 7 121 13 126 231 76 40.0 3e-13 MKKLGIIFATIILALPLFAAVSSTSASAAKAKTYSFSILTADFYDNLPVYHTNDHTVTVY RAAIGADNPSISFTANGKLKPSTNYHVTRYVKAKSNATKKIRSFLYVKGHGWIQSVKVTK GALNTDNEATKLPG >gi|238617817|gb|GG669604.1| GENE 1303 1415147 - 1415824 419 225 aa, chain - ## HITS:1 COG:lin0511 KEGG:ns NR:ns ## COG: lin0511 COG0518 # Protein_GI_number: 16799586 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase - Glutamine amidotransferase domain # Organism: Listeria innocua # 1 225 1 224 226 154 39.0 1e-37 MEITVIQHVSFEVPGLVTKWAKTHQHKLNVVKLFKNDGQLPQPEQVSFLIVLGGPMSAND DLPWIEPERQLIKDIVDSGKPMLGICLGAQQLAKAYGEAIVPTKKEVGFGPVTATQSAQS LFNAADTYQVLHWHGEGFRLPQQADLLFTSHYWQYQGFKLGSAIGLQFHLESTPETLAAL ASADTDFIPGSTYADNAQQVLSQTFDPNAALLLNQILDYLVTHPK >gi|238617817|gb|GG669604.1| GENE 1304 1415843 - 1416229 404 128 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0647 NR:ns ## KEGG: Lbuc_0647 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 124 28 151 157 154 70.0 1e-36 MDQVIDEVNQFLVPLTETKITKSMINSYVKQGLVDRPEKKRYSKQHLAEILVVSLMKPIL SLDTIKKAIAIALKLDPVDKAYDQFIHAFNDELTKTQSQHLNAENYQRMAIRSLLYKLLV EEMVNKDL >gi|238617817|gb|GG669604.1| GENE 1305 1416441 - 1417091 404 216 aa, chain + ## HITS:1 COG:lin1978 KEGG:ns NR:ns ## COG: lin1978 COG1272 # Protein_GI_number: 16801044 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Listeria innocua # 16 216 11 210 210 153 46.0 3e-37 MASQLIHLKRQQIVYEVLNAVTHGVSFIAGIVLTILLLMRAYHDHLSSVATISLIVYCVS VLMLYLASTLLHCFVFTRAKRVFQILDHSNIFLLIAGTYTPYCVIFINNLAGNILLAGVW LLAISGIVSHVVFHGKYQKTETTIYVVMGWLCLLLGKQLYVNLTPSGFWLLVSGGIIFTV GAIIYSFPRIPGLHLIWHFFVMAGTLTMFLSIYMNV >gi|238617817|gb|GG669604.1| GENE 1306 1417581 - 1418858 1323 425 aa, chain + ## HITS:1 COG:lin0576 KEGG:ns NR:ns ## COG: lin0576 COG0141 # Protein_GI_number: 16799651 # Func_class: E Amino acid transport and metabolism # Function: Histidinol dehydrogenase # Organism: Listeria innocua # 20 425 19 424 427 456 59.0 1e-128 MQIIEESLDQMLKQVAIRTNKVANRAEVEKSVRDIIANVAQNGDQAVKDYEKKFDRVELD NLAVSQSEIDDAYDKTDQDVIDALELAKRNITSFHKMEIEDSFVDAKQKGVIRGEKIAPL AAVGVYVPGGTAAYPSSILMNVIPAKIAGVKRVVMVTPPQTNGLNKAVLAAAKIAGVDEI YTVGGAQAIASLAYGTETIPRVDKITGPGNAYVATAKKQVFGQVDIDMVAGPSEIGVIAG SQAVASQVAADLLSQAEHDKLARPILVTDDKQLAINVNAEMNRQVKLLPRQEIAQAAMDN EGFIAVVKNIDDAFTLMNAVAPEHLEVQLPDAISYLNQIQNAGSVFLGFSASEPVGDYVA GPNHILPTGGTARFFSPLGVQDFVKRTQFVSYTRPALKKEADAITTLARVEGLEAHARAI ESRFK >gi|238617817|gb|GG669604.1| GENE 1307 1419321 - 1419752 348 143 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0650 NR:ns ## KEGG: Lbuc_0650 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 143 1 144 144 146 59.0 3e-34 MKKIQLILATLLVVLGIEGATNNIQAHASSSTTTPKSLRGTWYKYTGDGKFSTIKITTHS LTYNGSIYSPSKSGAHKLKVSKWGSWYSFNKGSSSSNLGQFKTEKRLIKGSYKKSLVRYH SIGTYYVFTHHKYNQDYSFKILD >gi|238617817|gb|GG669604.1| GENE 1308 1419965 - 1420477 521 170 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0651 NR:ns ## KEGG: Lbuc_0651 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 63 170 61 167 167 115 54.0 5e-25 MKKTLLTVCLMGLLTIGLAGCSSNSSDSSSSSSSKAQESQSQVQSSSEVTSSSETSATYA FKGQKAIRIRYENVHYTTRLDNDYQEERLYQKVPGSTTNNRVYHWDSLNVSDRQDVYVDK KAIATFKDDDNANEYDHEDFYRISFGRNAHQKYWASDDVIENEANEGYDD >gi|238617817|gb|GG669604.1| GENE 1309 1420789 - 1421967 866 392 aa, chain + ## HITS:1 COG:AGl1145 KEGG:ns NR:ns ## COG: AGl1145 COG2814 # Protein_GI_number: 15890690 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 6 389 41 426 431 157 28.0 2e-38 MKQFKLQSFVLVLIAFTLGFSEFLIVGILDDLSEQFNVSVATVGYLVTIFAMVYAVSTPF ITLLIGKYNLFWGLLALMGIFTIGNILSFVAQNFVFLVISRIITALVSGVAISIALSFVG YIAPMEKRGWLLSWVFSGFSIASVLGVPLGTWISTNFGWRISFLTIIGISVITMGLIFGS LPRDFKQKRSSIGGQLALLKDHRIQIGMFLPMFNLAAIYVFYTYLRPIITTQLHFSTSML TILLFVFGIANIVGNQASGKLTEGPGLSAMPKVYVAQFILMVVMPLSFHYSWFGAILLMM LIVSMPLLNSPIQIQFLQVAEKNYPQSIVLASSLNSIFSNFGIALGSATGGIMVSNFGMS SVGPGGAGYTLVTFILVVWLNHLNRKFAPQSL >gi|238617817|gb|GG669604.1| GENE 1310 1421988 - 1422692 604 234 aa, chain + ## HITS:1 COG:lin1574 KEGG:ns NR:ns ## COG: lin1574 COG0580 # Protein_GI_number: 16800642 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Listeria innocua # 4 228 10 234 272 215 52.0 5e-56 MNGFLGELFGTFVLIVLGAGTGAGVNLNKTYGHGSNWTFISLAWGMAVTMGVYVAASFGS LGHLNPAVTIPYALFGLFPWNQVLPYLLGQFCGAFLGAAVIIVMFAPHFKQTKSNQGNTV GIFATRPAIKAPLANFISEVVATFVFVFALLNLGNFSQGLKPLVVGLLIMVVGMGLGTTT GFALNPARDWGPRLAYTIMPVPNKGSAEWGYSWVPMFGPLVGGIIATFIQTTLH >gi|238617817|gb|GG669604.1| GENE 1311 1422770 - 1423579 545 269 aa, chain + ## HITS:1 COG:lin0656 KEGG:ns NR:ns ## COG: lin0656 COG5523 # Protein_GI_number: 16799731 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 80 210 39 164 345 83 38.0 4e-16 MDRPQLKLEMRRMLNSHFPFFILLFLPVLVIEFGLNFTQYLPWSHGSSYLNIGNYWNAPS IYDSRFNFDYTDPKAITAFLGLLLLLAIISSLLLTGIQFASIDLIRNKTTFDQPVNKSFT IFNNGDYFIGTIMIGLITSILTFLWSLLLFIPGIIKGYAYSQAIFIYRDALDKGEKIGYL EAITKSRELMDGNKMDFFVLYLSFLGWFILSNFTLNILDLWVVPYYNLAVANFYVKIHDD QSEPLQTILVDPDQPHHSDDDHSSSNDQT >gi|238617817|gb|GG669604.1| GENE 1312 1423661 - 1424794 1075 377 aa, chain - ## HITS:1 COG:BS_yjcI KEGG:ns NR:ns ## COG: BS_yjcI COG0626 # Protein_GI_number: 16078252 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Bacillus subtilis # 9 375 5 362 373 361 49.0 1e-99 MTKNKHFDIDTLLAQAGNRDNHDQFHSISTPIYLSSNFRHRDLEDVENFDPEKQYSYSRL STPTRKVLQETLAKLEDGAKAFAVSSGMAAIQLVFSLFNSGDEIITSDDLYGGSFRYFDY LTEHYGIKFNKWDGKRYDTLSSLITPHTKAVWIETPSNPTMKVINIQKVADIAHSSNSNI LVCVDNTFLTPIYQQPIREGADIVVHSATKYLSGHNDMLAGAVIAKSEEIGETLEFNFNT TGVTLDPFDSWLLLRSLKTLSVRMQRHTSNATYVAASLAKLPQVEKVLYPGQGGMISFYV QSRDQVDRLFKRLNIISFAESLGGVESLLTIPSLQTHRDMAKADRLKLGITDELLRLSVG LENPEDLAEDLKQALGD >gi|238617817|gb|GG669604.1| GENE 1313 1425326 - 1426495 1082 389 aa, chain + ## HITS:1 COG:MA2630 KEGG:ns NR:ns ## COG: MA2630 COG1454 # Protein_GI_number: 20091453 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Methanosarcina acetivorans str.C2A # 5 385 21 399 400 320 45.0 3e-87 MKENFDFLMPSVNFFGKGVIKKIGDRAKMLNMKKPLIVTDKFLRSMDNGPVAQTLASLEA VGVPYTIYDGVEPNPKIRNIQEAKKVYLDNDCDSIITVGGGSSHDAGKGTGIILTNGDDI TKLAGIETLQNPLPPLMAVNTTAGTGSELTRHCVITNEKTKLKFVVVSWRNIPLVSFNDP MLMLDVPASLTAATGMDTFVQAIEPYVSTNRNEITDGQCIQAIKLVEESLREAVANGHNI EARTKMVEAEMLGGMAFNNADLGYVHAMAHQLGGQYDAPHGVCCAMLLPIVEKYNIVAAP ERFAQLAKIMGENTDGLSTRDAADLSIKAMRQMCDDVKIPRSIKAIGAKPEDFELMAENA LKDGNAFSNPRKGTKEEIVQLFQEAYDQK >gi|238617817|gb|GG669604.1| GENE 1314 1426814 - 1427320 393 168 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0657 NR:ns ## KEGG: Lbuc_0657 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 167 1 167 167 176 61.0 3e-43 MKRHILTDVGLLFLIPLGIIGFSLSSDNQSESRQAAQAQNNTVKTTTDTEYGSGSVLSAN QIQSLDFRPSRVYRVRYTKVNFKTVLDDDYREEKLYRYVPGAKKNNRTYKWSRIKARIGK KVYVDMKAKAYYRDDDGERESEDFYRIRTAKSASSQKYWVNEDAIEDD >gi|238617817|gb|GG669604.1| GENE 1315 1427480 - 1428463 654 327 aa, chain + ## HITS:1 COG:MTH1789 KEGG:ns NR:ns ## COG: MTH1789 COG1088 # Protein_GI_number: 15679777 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Methanothermobacter thermautotrophicus # 3 318 4 315 336 354 51.0 1e-97 MNILVTGGAGFIGSNFIHLLLGHRQSDRLINFDALTYAGNLDNLDDIPEGATYRFIKGDI ADKEAVKKVVSNYQINVIVNFAAQSHVDRSIIDATPFVHTNIEGVNTLLEVAREYHLDKF VQVSTDEVYGSTPSQARFDEQTPLNPSSPYAATKASADLLALSYFKTFGTPVCITRSANN YGRYQFPEKLVPLMVTAALRGKKLPIYGNGQNKRDWLNVQDNCRAIEMVMSNGKPGQIYN IAGRQHKTNLQIVKIIEKQLAAIHPQVTFVKDRPANDQLYAIDDSKIRHELGWRPEFSFE IGMGDVIDWYVIHPEWWQPLLKRVQNR >gi|238617817|gb|GG669604.1| GENE 1316 1428479 - 1429342 943 287 aa, chain + ## HITS:1 COG:CAC3342 KEGG:ns NR:ns ## COG: CAC3342 COG2084 # Protein_GI_number: 15896585 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Clostridium acetobutylicum # 2 287 7 291 292 287 50.0 2e-77 MKIGFIGTGVMGTGMINNLLKANFEVTVYNRTKAHAQEVLNHGASWQQTPADVAKVSDVV ITIVGFPKDVEEVYFGHNGIFETAKPGETLIDMTTSSPVLAKKIFSAGQDRQIDVLDAPV SGGDVGARNGSLTIMVGGQQAVYEHVLPVFNAMGTSVTRFGGAGQGQNAKMANQIMIAGT MTGLTEALVFAKAAGLDQAQMIKTIQGGGAGNWSMGTYGPRILKDDLKPGFYAKHFLKDL RIALDAADEMKIQLPATQKAKDLYEAMVDQFDLGNLGTQGLIKIYDK >gi|238617817|gb|GG669604.1| GENE 1317 1429450 - 1429650 221 66 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0660 NR:ns ## KEGG: Lbuc_0660 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 66 1 66 68 73 66.0 2e-12 MGFSPKLIVADLSLILSIAIAFYIQSSHLEDNVKIGLIILASIFLTISVVINVVSAIQKR RERKNK >gi|238617817|gb|GG669604.1| GENE 1318 1429947 - 1430390 336 147 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0661 NR:ns ## KEGG: Lbuc_0661 # Name: not_defined # Def: regulatory protein MerR # Organism: L.buchneri # Pathway: not_defined # 1 143 1 143 144 181 60.0 1e-44 MTKENSNEPLIDSNKLIFGIGQVQQITGVSGRQLRYWEEQHYIAPIEQQKGTQRQYSFHT LFLIFHIQRYLTQGFTLQAAVEKAKEFEKQMPVLRTFIKAQLQGVDVSNERSVIDFGFKN DERKQRVYGIVEGDKTYFKIEDLKESK >gi|238617817|gb|GG669604.1| GENE 1319 1430557 - 1430766 271 69 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0662 NR:ns ## KEGG: Lbuc_0662 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 69 1 69 69 95 79.0 5e-19 MLKIVYQNGTSHETIDYKSAADFMANQRLEVPDLEDYYKIDSVTLDGNPIELDDKTIIGL YKKFDNEGD >gi|238617817|gb|GG669604.1| GENE 1320 1430989 - 1431642 528 217 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0663 NR:ns ## KEGG: Lbuc_0663 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 217 1 217 217 254 58.0 2e-66 MFKPNHFLAVVGIILLSLVGVATFVQKPVLAQTVTFTPEMHGTKNLTHQGTIHYYIRPDA GKYQKEIRTAVAKWNRALGRPILQPGTDMGTSRLVFTATNHLDKGYAGMAEINSGVIALN RSWMSRYNDEKKQAVVIHELGHTFGTRDLYDYSNPSLRAAFRKHTIMGGSYSTRIQQFDV KLAKWSLANTRSMSQAEFNGYRSNPGLYYQQMLHGKL >gi|238617817|gb|GG669604.1| GENE 1321 1431946 - 1433202 620 418 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 10 417 16 416 418 243 36 2e-62 MNILDDLKWRGAINQETDHDGLYDLVNKKSVGLYVGIDPTGDSMHIGHLIPFMILKRFQL AGHHPVILIGGGTGSIGDPSGKKSERVLQTMDQVRHNQEALTRQMEKLFGQDGSFEIVNN YDWLSKMSLLDFLRDYGKLFNINTMIRKEIIASRLEAGISFTEFTYQILQGVDFLHLFRY NDVQVQLGGADQWGNITSGIDLIHKVEGSDAQAYGMTIPLLLKADGTKFGKSEGGNVWLD PEKTTPYEFYQFWLNQDDRDVVKYLKYFTFLDKTEIDDLEKKVQTHPEKREAQRRLAQEV TKFVHGPKAVESAERISKALFSGEVADLTTTEIEQGFKNMPTVNVSSEPLNIVQWLVDAT KIESSRRQAREDINNGAIRINGAKIQDTDFEINPSDKFDGKFVIVRRGKKRYFLARVK Prediction of potential genes in microbial genomes Time: Tue Jul 12 08:57:20 2011 Seq name: gi|238617816|gb|GG669605.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD2, whole genome shotgun sequence Length of sequence - 58895 bp Number of predicted genes - 39, with homology - 39 Number of transcription units - 24, operones - 10 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 73 - 132 3.1 1 1 Tu 1 . + CDS 173 - 778 534 ## COG0550 Topoisomerase IA + Term 795 - 831 -0.8 2 2 Tu 1 . - CDS 1590 - 2363 182 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen - Prom 2444 - 2503 80.4 3 3 Tu 1 . - CDS 3495 - 4010 310 ## OEOE_0062 transcriptional regulator - Prom 4249 - 4308 4.8 4 4 Tu 1 . - CDS 4331 - 5470 467 ## SGO_1119 Abi-alpha protein, putative - Term 5571 - 5616 2.1 5 5 Op 1 1/0.000 - CDS 5826 - 7613 826 ## COG1479 Uncharacterized conserved protein 6 5 Op 2 4/0.000 - CDS 7647 - 8561 436 ## COG0732 Restriction endonuclease S subunits 7 5 Op 3 27/0.000 - CDS 8306 - 8878 245 ## COG0732 Restriction endonuclease S subunits 8 5 Op 4 4/0.000 - CDS 8868 - 10490 1205 ## COG0286 Type I restriction-modification system methyltransferase subunit 9 5 Op 5 3/0.000 - CDS 10504 - 12402 1582 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 10 5 Op 6 . - CDS 12374 - 13672 1037 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases - Prom 13845 - 13904 8.6 11 6 Tu 1 . + CDS 14189 - 14926 375 ## COG1396 Predicted transcriptional regulators + Term 15038 - 15078 2.7 12 7 Tu 1 . - CDS 15053 - 15370 121 ## LPST_P0013 hypothetical protein - Prom 15532 - 15591 7.8 + Prom 15488 - 15547 5.3 13 8 Tu 1 . + CDS 15567 - 16070 368 ## gi|227510769|ref|ZP_03940818.1| hypothetical protein HMPREF0496_2932 + Term 16103 - 16152 10.9 14 9 Op 1 . - CDS 18103 - 18351 276 ## gi|227510770|ref|ZP_03940819.1| hypothetical protein HMPREF0496_2933 - Prom 18373 - 18432 5.5 15 9 Op 2 . - CDS 18435 - 21272 1030 ## LEGAS_0983 hypothetical protein - Prom 21443 - 21502 7.2 16 10 Op 1 . - CDS 23281 - 23505 221 ## OEOE_1495 transposase - Prom 23526 - 23585 6.1 17 10 Op 2 . - CDS 23596 - 23934 259 ## COG1695 Predicted transcriptional regulators - Prom 23962 - 24021 8.2 - Term 24007 - 24048 5.7 18 11 Op 1 . - CDS 24195 - 26177 1535 ## COG2211 Na+/melibiose symporter and related transporters 19 11 Op 2 . - CDS 26161 - 28245 1187 ## COG1874 Beta-galactosidase - Prom 28313 - 28372 3.6 - Term 29792 - 29845 -0.9 20 12 Tu 1 . - CDS 30023 - 30217 278 ## gi|227510778|ref|ZP_03940827.1| hypothetical protein HMPREF0496_2941 21 13 Op 1 . - CDS 30283 - 30618 315 ## gi|227510779|ref|ZP_03940828.1| conserved hypothetical protein 22 13 Op 2 . - CDS 30611 - 31420 561 ## COG1192 ATPases involved in chromosome partitioning - Prom 31442 - 31501 4.5 23 14 Tu 1 . + CDS 32401 - 33360 548 ## Lbuc_2446 replication initiator A domain protein 24 15 Tu 1 . + CDS 35561 - 36538 801 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Prom 39075 - 39134 80.4 25 16 Op 1 . + CDS 39378 - 39593 291 ## pWCFS103_21 hypothetical protein 26 16 Op 2 . + CDS 39597 - 40559 793 ## LCAZH_p026 putative LtrC + Prom 40695 - 40754 7.6 27 17 Op 1 . + CDS 40945 - 42504 592 ## COG3344 Retron-type reverse transcriptase + Prom 42506 - 42565 1.9 28 17 Op 2 . + CDS 42586 - 46983 3056 ## LVIS_B23 superfamily II DNA/RNA helicase 29 17 Op 3 . + CDS 46983 - 47606 334 ## LA2_03930 DNA methyltransferase - Term 48652 - 48687 5.1 30 18 Tu 1 . - CDS 48710 - 49297 417 ## COG4475 Uncharacterized protein conserved in bacteria - Prom 49344 - 49403 5.5 31 19 Op 1 . - CDS 49425 - 50843 768 ## COG1757 Na+/H+ antiporter - Term 50855 - 50894 9.3 32 19 Op 2 . - CDS 50919 - 51275 227 ## LVIS_2212 amino acid transporter - Prom 51355 - 51414 80.3 33 20 Op 1 7/0.000 - CDS 51716 - 52732 702 ## COG0531 Amino acid transporters 34 20 Op 2 . - CDS 52769 - 54652 1690 ## COG0076 Glutamate decarboxylase and related PLP-dependent proteins - Prom 54683 - 54742 5.5 - Term 54787 - 54830 3.9 35 21 Tu 1 . - CDS 54863 - 56119 612 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 - Prom 56159 - 56218 4.0 36 22 Op 1 . - CDS 56227 - 56550 229 ## LVIS_2215 hypothetical protein 37 22 Op 2 . - CDS 56609 - 56863 144 ## gi|227510796|ref|ZP_03940845.1| hypothetical protein HMPREF0496_2959 - Prom 56896 - 56955 4.3 + Prom 57782 - 57841 2.1 38 23 Tu 1 . + CDS 57868 - 58365 208 ## gi|227510798|ref|ZP_03940847.1| hypothetical protein HMPREF0496_2961 + Term 58455 - 58492 3.3 - Term 58443 - 58480 7.1 39 24 Tu 1 . - CDS 58498 - 58734 142 ## Lbuc_1948 lipoprotein Predicted protein(s) >gi|238617816|gb|GG669605.1| GENE 1 173 - 778 534 201 aa, chain + ## HITS:1 COG:CAC3567 KEGG:ns NR:ns ## COG: CAC3567 COG0550 # Protein_GI_number: 15896801 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 11 196 254 442 709 109 34.0 4e-24 MQAKHVQKGSQAGLIKDVQKQGKKRASPQLFSLSSLQSAMNKRYHASASQTLAAIQSLYE AKLLSYPRTDCAYITDEEFDYLVANLTKYLGLVSKPVALTNTTPNKRYVDGKKIEEHYAI IMTKVVPTKDQLATLPKIQHQVYDLVLRTTLAMFADPYEYEETTIITQVGDANFKATGKV PTKQGWQALFDDHKADIKLIK >gi|238617816|gb|GG669605.1| GENE 2 1590 - 2363 182 257 aa, chain - ## HITS:1 COG:MA2121 KEGG:ns NR:ns ## COG: MA2121 COG2865 # Protein_GI_number: 20090964 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Methanosarcina acetivorans str.C2A # 15 251 221 450 458 95 29.0 1e-19 MAIFGSKKTLDSLEDSRRFTGSIFQQIDQILEYVDLNNHTRSKITGNPQRRDKRDFPPVA IREGLINAFAHRSYLDNGAVQIKIYSDRIEILSPGSLPGGLTVKDVLAGRNYPRNHNVVY ALRFLKYVEDLGTGIDRIKDSYELINSNKKPKLEAGENFVKLILPNQNYISDVPSNVNIL STNNPSSVEIIVDDYGKIIDFLKDHPTIRRKDVEKILSVKNTQANKKLKKLVDKGILTKI GSGSKTSYQLNRKILNK >gi|238617816|gb|GG669605.1| GENE 3 3495 - 4010 310 171 aa, chain - ## HITS:1 COG:no KEGG:OEOE_0062 NR:ns ## KEGG: OEOE_0062 # Name: not_defined # Def: transcriptional regulator # Organism: O.oeni # Pathway: not_defined # 2 171 13 182 453 240 72.0 2e-62 MEGQTIEYKEDFTDKIKREIAGFLNGKEKAYIYLGVNDDTRMIVKNFSGEERHSFEEKIS NWASTVYYPSAVNLIKVHTDNDPFCIEVTPGKLTPYQLKDKSHVHTYVRNNSLTEPASPE SFKKLINRSKLDLFDEQASDIQQLNFGYLKNEFNKAQKDFMPEKISGFFNK >gi|238617816|gb|GG669605.1| GENE 4 4331 - 5470 467 379 aa, chain - ## HITS:1 COG:no KEGG:SGO_1119 NR:ns ## KEGG: SGO_1119 # Name: not_defined # Def: Abi-alpha protein, putative # Organism: S.gordonii # Pathway: not_defined # 3 368 20 382 382 171 31.0 6e-41 MIWENTNSELLKDILSFANTAHHHDCYLIYGINDGKDVIGITDTDKNRKNQQNISDFLQS LNFANSSIPKVLVNTLELENKLVDILTIKDSDQVPFYLRADYTKDGLALKHGEIFFRDED SNFGKQQAPTYETIENLWKKHFHLDLTPIEQFKFALKDIINWTYHEGDNEAPKMCVYNSN LDFHIEISFDPSSSPTIEAFSVYQARVGVMWGTVRLKYKNILIYKFNCISLNQYICYEID PKRSLLNESDLNSLYFYLYANSIEKLTSTVINYAMDYKTHVSPNESDYNFKKKIVVYSDE EERKRIEKDLKAKFSTKKALIPIYEADVNELKQKMRLVEGHSNTDAQELIKEANIARYIN ENYLHINYYFGDHPFFPRY >gi|238617816|gb|GG669605.1| GENE 5 5826 - 7613 826 595 aa, chain - ## HITS:1 COG:TM0991_1 KEGG:ns NR:ns ## COG: TM0991_1 COG1479 # Protein_GI_number: 15643751 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 15 381 12 361 364 202 32.0 2e-51 MSNVVTKQYEVQNNSIGTVLNWIKSGEIGLPELQRPFVWKSSKVRDLVDSLYRGFPIGYL ITWNNTTVKLKGGGSAVGKKIIIDGQQRITALRAALTGEPILNKQLESKRIKIAFNPWNE KFETTTAPIEKNKRWINDIANLFQMANTFSFINNFLLKNNDKTPTERDKAVNAIEKLHAL TNNDIGNIVLSSELPIEDVTEIFNRINSKGTVLNSADFVMSKLSADEKHNGEKIRRAIDY FAKLLVNPTMLADIKNNDAGFTASNYFKQIAWAANERTDLYDPDFGDILHVILNFQFGRG KLTDLVGLISGRDFKTKTYTEEAMDKAYHELETGLLRFVNKSNFERYIMLLRSLGMISRK TLSLSGKGAINFGYSLYLLLKYQGQTTNFELETIVKKWIIMSALTYRYSGSSETQSQTDI RKFASTDPVKYLNSIVKQELPDSYWHNTLPNGALVSSSTQANVWRIFVMSQVRKHTIAWL EKDHEVADLLIEQGNIHHYFSSSFNLKKNGLSQTMYNQIANYIWITQPRNLQISDRAPKD YLADQQIIKYGNAKSFSENAIPESLKHDDYTEYEDFLVKRRQLISQKLKEYFESL >gi|238617816|gb|GG669605.1| GENE 6 7647 - 8561 436 304 aa, chain - ## HITS:1 COG:L0310 KEGG:ns NR:ns ## COG: L0310 COG0732 # Protein_GI_number: 15672634 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Lactococcus lactis # 49 303 160 406 407 143 35.0 5e-34 MSPLYYIFRAHNVDGMYLEKYFSSTKWHRFMELNGDTGARADRFAIKDKDFVQMPIPLPN LEEQSKIARFLENVDNLIAANQRKLDLLKELKQGYLQKLFPQNGSKFPQLRFAGFADAWE PRKLGDVANIVGGGTPSTSILEYWNGNIDWYAPAEIGEQRYVSKSQKTITELGLKKSSAT ILPVGTILFTSRAGIGKTAILASRAATNQGFQSIVPRTEMLNSYFIFSETSKLKKYGEIT GAGSTFVEVSGKQMEKMPIILPILKEQEIIGKFFKQLDKLIAANQRKVEKLKELKKGYMQ KMFC >gi|238617816|gb|GG669605.1| GENE 7 8306 - 8878 245 190 aa, chain - ## HITS:1 COG:SA0392 KEGG:ns NR:ns ## COG: SA0392 COG0732 # Protein_GI_number: 15926110 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Staphylococcus aureus N315 # 1 119 1 120 403 77 34.0 1e-14 MKDNQAKYPQLRFKGFTDPWEQRKLTDISEKVTEKNSDNEFSETLTNSAEYGIISQRDFF DKDISNEKNLNTYYVVRDGDFVYNPRISNFAPVAQLSAIHWDVPALCHRFITFSERTTLM VCTWKNTFQVQSGIDSWNLTGTQVLVLIGLQLKTKTLSRCQFRYQTWKNKVRLRAFLRMW TTLSLLTSVS >gi|238617816|gb|GG669605.1| GENE 8 8868 - 10490 1205 540 aa, chain - ## HITS:1 COG:SPy1906 KEGG:ns NR:ns ## COG: SPy1906 COG0286 # Protein_GI_number: 15675719 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Streptococcus pyogenes M1 GAS # 1 535 1 522 526 538 54.0 1e-152 MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE NVTRKYAQYMDPQFELEGVSVQPSLVEYLQNTLGYLIQPQALYTTLIGKIQAHTFALDDL SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLIHH QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQRNAGDKQVRTIYDPAV GSGSLLLNVGQHVQDPSLVSYHGQELNTTTYNLARMNLMLHGVSYDDMHLRNGDTLSKDW PVDEPYLFDAVVMNPPYSAHWDNSDKRLSDPRFRDYGVLPPKSKADFAFLLHGFYHLQEH GTMGIVLPHGVLFRGAKEGKIRQKLLLDNRIDAIIGLPANIFHSTGIPTLIMILKKHKTT DDVLFIDASREFEKDKNQNKLTAANIQKIVTTYQNRQDVDKYAHVASPAEIKENDYNLNI PRYVDTFEPEPEIDLDQVKADLKQLDEEISQNEQAFNELASQLVTTQVNDQSKLEAHNEG >gi|238617816|gb|GG669605.1| GENE 9 10504 - 12402 1582 632 aa, chain - ## HITS:1 COG:SPy1904 KEGG:ns NR:ns ## COG: SPy1904 COG0610 # Protein_GI_number: 15675717 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Streptococcus pyogenes M1 GAS # 5 570 424 933 992 211 29.0 3e-54 MVTLATPIFNENKKQLKGDLAVTTEELFGKVCHVYNLRDALEDQAVLPFNVEHVTTIGKD TLITRALEKENQRVKARRDKQGRLLSTTDEAKIQAKIQAMSVKDLEETYLTPADFETDEH INQVVQYILQKGPRKTSLGHGNYNAILTTSSIEMAQRYYQAFKAAKKTTHNQLDPDWPRI AITYSLSENEDQSAQKHDQMATILKDYNRQYHTNFDLADLNLYNEDVAKRAARREAVFAH LKPDQEINLVIVVRRLLTGFDAPRLNTLFVDRTLAYQELIQAYSRTNRLQNRELKQEGQI VTFRVPAIMEANEREAYKLYSGEGSFNVIIRPTYQQAVLKFQKAVVDLKTIAPTPTAADD LKGTTAKVQFVKAFRQVNQQLNSLSMYNDFTWKNSEKAFGIAQPEVESYTGKYLRIKAAV TNQEPEKVPEELAALDFSLAVGSVVLVDYDYLTQLIQDWIDEQQQYSTPDQAQAHMTDYL QNSAKVQASLNKLAETQPQQAQLIREAMPYIEQQLQQSQQQSTQNQTPVALNARELVTDY AQRQLVQKTTAFAHTWGLDQAALLRVAREHTVGTDEWHHEQELTQSANLTAALQAQTATG PKIPAILPLYRIKSQAAWRQFIEHDLAIYLQK >gi|238617816|gb|GG669605.1| GENE 10 12374 - 13672 1037 432 aa, chain - ## HITS:1 COG:SPy1904 KEGG:ns NR:ns ## COG: SPy1904 COG0610 # Protein_GI_number: 15675717 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Streptococcus pyogenes M1 GAS # 3 432 8 428 992 363 46.0 1e-100 MLELSFEKEVVKTLTTGSNQWVERKDLYGATPDQLWANFRDKLNNNNYAKLQGYPLTDTE FNQVKRAIEVRTPYEAAKLLAAENGIGKVEVERDDAKLGTVTLELFWKADVAGGKSSYEV VRQAVRPRLAGTQDVDPDRRFDVTLLINGLPLIQLELKKATVELNQAFNQIEKYAQEGKY TGIYSLLQMFVIMTPDSTAYFANAEPDHFNKAFLFNWRTRDNHPVENGLAFTRQVLNIPM AHKMVSEYTVIDQERQSLILLRPYQIYAIEAVMHRIHDHQDGFVWHTTGSGKTLTSYKTA KLAAQDPGVDKVIFLVDRRDLDEQTTSNFSAYAANDDIAINEAQNTGDLMRKLQQNDGKV LVTSIQKLHRAVKKTQAQLATGKQSRFSKTLKQRVIFFVDEAHRSQFGKMQKEIRAAFIN SNWYGYTGHPHF >gi|238617816|gb|GG669605.1| GENE 11 14189 - 14926 375 245 aa, chain + ## HITS:1 COG:SPy1834 KEGG:ns NR:ns ## COG: SPy1834 COG1396 # Protein_GI_number: 15675661 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 99 1 97 195 69 36.0 7e-12 MQFANVLRKRRKELHLTQQQLADKLHVTRQTLSRWENNLSYPNLDTLVNLSEFLAVPLDI LLKGDGNLMVNKISQDVRDKDKYKRYLMIVSAIFILIFLWLSVLGYGRASQNEWIDRFNP FLRVQYGYAVLPNQVPEKREKTTIIDSDGKNKHVAAVKTPQQVDAFVADDPFGSGSWLKF YTGQYSSKQRWALVAHKGSYVSNVRLVSRAQIPLMMREQTGNHYVAYDAHAERRITKRFL WWPFN >gi|238617816|gb|GG669605.1| GENE 12 15053 - 15370 121 105 aa, chain - ## HITS:1 COG:no KEGG:LPST_P0013 NR:ns ## KEGG: LPST_P0013 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_plantarum # Pathway: not_defined # 1 100 24 123 131 173 92.0 2e-42 MMKWQEFYLSDHTAALNHQNQQLNAVYVPRPQQSLATITEVLADAYQRQQPVIIQLKTVD QNNRHWPDITTLIRGYNANDIVIDADRFIPLPEIRNVAFKNTEKL >gi|238617816|gb|GG669605.1| GENE 13 15567 - 16070 368 167 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227510769|ref|ZP_03940818.1| ## NR: gi|227510769|ref|ZP_03940818.1| hypothetical protein HMPREF0496_2932 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_2932 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 127 167 1 41 41 68 100.0 1e-10 MKKIYTGILVCLSLILVLTFTTPNTYAKTGYTHSNNVFGRVKYSTTIPQHIRGTYYSYNG KNRWLKVRVSAHAVRSYSNGNHFYITPGQRLVIQRLAFAYLNYSHSVFTFQAKAHYCYQV AFAEQGMRMSHVHYKGHKMSAIHCIQNQGYSYDLVSHKVKHFFQHQQ >gi|238617816|gb|GG669605.1| GENE 14 18103 - 18351 276 82 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227510770|ref|ZP_03940819.1| ## NR: gi|227510770|ref|ZP_03940819.1| hypothetical protein HMPREF0496_2933 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_2933 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 82 1 82 82 163 100.0 3e-39 MTIPKHYEITDEQWARIEELFPPYRTSRPAKLGGVNVIADKAYGTAELRQYIEAEHGQYT ILSKSNTANLCLATIMFTVNEI >gi|238617816|gb|GG669605.1| GENE 15 18435 - 21272 1030 945 aa, chain - ## HITS:1 COG:no KEGG:LEGAS_0983 NR:ns ## KEGG: LEGAS_0983 # Name: not_defined # Def: hypothetical protein # Organism: L.gasicomitatum # Pathway: not_defined # 33 939 1 907 911 812 49.0 0 MVTDLTSLQTLAMLIFTTVKQWSRRKDDLMDSMKKLAIRNINDAVKNDSLIMFVGAGVSA NSGLPKWSELIDEFKSDLKLGKDESNYLKIAQYYYDEVGKQKYFQKITSIFQPHINARPN KIHDQIFRITPRHIITTNYDLLLESKMNSTISKYEVIKKDMDIPYSKAGHYLIKMHGDLK EKNIVLKEDDYLDYENNFYMISTLIKALIMNNTVLFIGYSLNDSTFNSIFRMIQKGFKGN AQKAYFFTVDKQNTAEIEYYKKKGIQVIISEKQSGGEKQRDAGRCTVDFLKQINSDTTLK PTTSKQLWNNISFLNGLYFIDTNDVVKYTGLTLFPSNKLNWSSREADSLNIVQNKDITEF LETKTLFNKFEDFNRTKKYQFKQNPVLSEGYKLYKENRYEDAQKKFREIANKAFIQQDYW NYLIAEFNVKNILLLLENSDSLSKPTNDIDDLDKVVTSLSSNGDTQTRKSCIFFRDEIKH WGFINKQAFKINNLLDELRYERVNYQSGGLNINSNLQNAQIEFRSLMAFIKANCICVFQY EEFKEVVNRYFECLLIAYDNSNYHPNRIGELNTASSIINNLSLNDVKDIVPYLDIKNAKT LMKNYELSKIKLEKNAVEYLLTKISNLSQKLQRRNNFYDRNQLINYISFLSMVKLDDINV IIPLLSNYPIIVGSVSPLGRMLTILVSGKNLIKVTNYEKLIKIIDSHLNKIIKKSLIESF NDNFRLYALLMQKLTDNNSKQLFIRADSLGEKLSWINNNSNKLTKIVDYKYLLFYLYQYF DQDLKKLVDQILVKYEKLDCSKLDLHFIETLVMGKVYTFDSKKKMILNFEIKNVNKKPEQ TILYPDPRKQAISDLFRLIQQGYFTLNEIKEKLNLQTIRGTFPEVDWTLLNDHSEQVILK LVKGYTFSLARKKFGTSEEKKKYFDDWLLKQGRENKIKYFDKNPE >gi|238617816|gb|GG669605.1| GENE 16 23281 - 23505 221 74 aa, chain - ## HITS:1 COG:no KEGG:OEOE_1495 NR:ns ## KEGG: OEOE_1495 # Name: not_defined # Def: transposase # Organism: O.oeni # Pathway: not_defined # 1 71 1 71 87 126 98.0 3e-28 MKYYSDEFKNNIVKLYHNENRSNKSLANEYGVHPTTISHWIKRAKLVELPDGGVTSVEAF KQLQKENQQLKLAS >gi|238617816|gb|GG669605.1| GENE 17 23596 - 23934 259 112 aa, chain - ## HITS:1 COG:BH0406 KEGG:ns NR:ns ## COG: BH0406 COG1695 # Protein_GI_number: 15612969 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 5 107 68 169 174 89 42.0 2e-18 MAQDISSQILKGILQGIMLIILEKTPEYGYGLSKKLNDYGLITVPKGTIYPLLSTMEKRG LITGKMQSSPDGPDRKYYFITSAGKTSKSAFIDQWQHLQIVVQKLIDEEDTQ >gi|238617816|gb|GG669605.1| GENE 18 24195 - 26177 1535 660 aa, chain - ## HITS:1 COG:STM4299 KEGG:ns NR:ns ## COG: STM4299 COG2211 # Protein_GI_number: 16767549 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 25 460 8 429 476 136 24.0 2e-31 MERTSKAPKVGVKRPQINSRKIWDRVAFMFGNLGHSAFYGALSTYFIVFVTSGMFTGLPS SIANKLIGLITGLVVIIRLGEVVVDPILGNIVDNTKTRWGKFKPWQLIGAVVSSVLLVVL FTGIFGLAKVNWVLFAILFVVLFIILDVFYSFADVSYWGMVPAISDDSHERGIYTSYGAF LGTVGWNGLTIIVVPITTFFTYLATGKHGQGPSGWLAFAVIIAAAAILSAVLVTLGPKEK HNVIRDAAQQKTTIKDVFVGIAKNDQMLWISLAYLLYSFAYVATNGVLYYYFKFVIGKPG EFAIAGVVALIVSLFGSPIYPFLNKFIPRKVLYSIGMISMIISYLIFISAKDNMAMVIFG LILFNFSFAQLVVILSLTDSIEYGQLKNGNRNEAVTLAIRPMLDKISGAFSNGMVGAIAL AAGMTGSATAADMSAHNIRIFELFAFYTPLALSVLSLLVFVFKVTITEKKHAEIVEELQV KLAKEGTDDNSDVKPNPAAEVTDVNAIETVLSPVDGEIISLKDVPNEIEGKTGFPGTGFA VKPSDGKIYAPFDGTIEFTFSTRHVLGMVSNSGLETIIHVGIGTVNMRGKGFISHYVEGQ KVHAGDLLLSFDRDLIQQSGYSDDVVVFFSQPKRIISHSQISMKHVHHGDGVLNVKFEKE >gi|238617816|gb|GG669605.1| GENE 19 26161 - 28245 1187 694 aa, chain - ## HITS:1 COG:BS_lacA KEGG:ns NR:ns ## COG: BS_lacA COG1874 # Protein_GI_number: 16080466 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase # Organism: Bacillus subtilis # 11 679 17 682 687 693 49.0 0 MPKRLAVNEFLHGGDYNPEQWLDTPEVIDQDFKFFKEAKINDVTLGIFSWAKLEPEEGKF DFSWLDNIFDRVETAHGHVIFATPSGARPRWLADKYPEVLRVNEDGTRNIFGERHNHCYT SPIYRQKVQLINQKLAARYGNRPSLVLWHISNEYGGDCHCDLCQEAFRTWLKNKYHTLDN LNRAYWANFWSHAYTDWNQVHSPSTLGDTTVLALNLDWKRFVTHQTIDFYESEIKPIRKI TPNIPITTNFMGGNPPISKIFEGLDYQEFAKHVDVVSWDSYPAWGNDYETTAHLAMKVGL MNDVMRSLKHQNYLIMESTPSQVNWHPYNRPKLPKMHEMGCLQEIGHGANSVNYFQLHQS RGSSEMFHGAVITHQLSDKTRTFKEVAKVGADLVKLKAALPTTYCQPKVAIVYDYSNMWA LEDARDYSNNTKNYWQTIQDQYAYFWDHDIPVEMVSVEDDLSRYQLVIDPMHFMMSKRFA DKLKDYVSSGGTLVGTYITGMVDENYLAYLGGWLKPLHEVYGIEFQETDTLYPTQHGQLK VFGKIYQTKDYCDFVSLAGATALGNYSSDATNNTPGITQNTFGKGMAYYLAARTDVDLLD DFYQMIDKKLRLSTTLPIQKQSNGISVQVREAHDDRYFFVINFNDKSAEIKLSTELFDVL TQSKAQAGLQTMAQYDVKVYSERKESEDYYGKDK >gi|238617816|gb|GG669605.1| GENE 20 30023 - 30217 278 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227510778|ref|ZP_03940827.1| ## NR: gi|227510778|ref|ZP_03940827.1| hypothetical protein HMPREF0496_2941 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_2941 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 64 1 64 64 95 100.0 2e-18 MSYSEAMAKHYYLKEFADKLDSKKPDTIAIQHEINSLELKKQWLEEFLNSEADKKRDNAK CSEI >gi|238617816|gb|GG669605.1| GENE 21 30283 - 30618 315 111 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227510779|ref|ZP_03940828.1| ## NR: gi|227510779|ref|ZP_03940828.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 111 1 111 111 153 100.0 4e-36 MANSLIRSNRNKANAIPKPAKQAKASDFDKTASDSKAVSSVTFDTNLKISNHTRNKLQAM AMIGYAENQRLSVDTAIQSFYEQLSTNEQREFDLQVSTLETRDVKLKSRNN >gi|238617816|gb|GG669605.1| GENE 22 30611 - 31420 561 269 aa, chain - ## HITS:1 COG:pli0069 KEGG:ns NR:ns ## COG: pli0069 COG1192 # Protein_GI_number: 18450351 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Listeria innocua # 4 267 21 284 293 192 41.0 5e-49 MTQVITFGNFKGGVGKTSNSTMVALELSNRDFKTLLVDLDPQGNATNLYLKTKLNISNEV GHFDKTLMSSVEDGNLDSSIINIKDNLDLLASAPDFSLYPRYMEKLHNYNDRVKEFDRLL TPLKAKYDYVIIDIPPTISLITDSALYASDYCLIVMQTHEHSFEGAEAFIKYIQEEVIDE YQAPRLELVGILAVLLQAGAPVDEATVANAISEFGEENLFKTRIHSMQRLKRYGITGITF KSKFDKRVFAVYKDVTDELLQRIEVIEHG >gi|238617816|gb|GG669605.1| GENE 23 32401 - 33360 548 319 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2446 NR:ns ## KEGG: Lbuc_2446 # Name: not_defined # Def: replication initiator A domain protein # Organism: L.buchneri # Pathway: not_defined # 2 316 4 318 366 394 67.0 1e-108 MTQFNFIQSQNAYGTKFFQLPQVLLYGEKYKELSDSAKLGYVVLRDRLEYSLQNNWIDDE NRVYFIFTNHELQNLFGWSDRKISKVKKELEEAGLLFQINQGFDPKKKKNLPNRLYLADL EVTAKDVYIKQNFANKTAGTLDTSGLAQMQARQEKIKTAGTLDTSGLAQMQARQETAGTL DTSGLAQMRHNLYNTNNSDTNRYNIDTQKLDFSTAHFSPAEIQKQNQDLVNHANDFLTDE DSGLPVFLEPEAVQLLSFWCRTPQQMRRFIGIILNAKYRVEKDHQDIGVLIPLDDEELKP LMTKALRRYFNALRSNLAS >gi|238617816|gb|GG669605.1| GENE 24 35561 - 36538 801 325 aa, chain + ## HITS:1 COG:AGpT237 KEGG:ns NR:ns ## COG: AGpT237 COG0507 # Protein_GI_number: 16119945 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 247 18 267 1117 123 32.0 5e-28 MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGRHYFYARSVMPESFILTPKNAPA WASDREQLWNEVEKKDRKSNSRYAKEFNVALPVELSESEQKELLTKYVKENFVDEGMVAD VAIHRDHPDNPHAHVMLTNRPFNPDGTWGQKTKTEYILDSHGNKTKTPAGNVRNRKIWLV DWDKKEKITEWRHNWAASVNQALEQKNIPDRISEKSFVEQGIADTPMQHEGINSKRHKRK AFNQQVKNYRKSKAGYKNMQEKVVNRGHLDGLSKHFSFNEKKVVKELSHELKTYISLESL DDKRRMLFNWKNSTLIKHAVGEDTS >gi|238617816|gb|GG669605.1| GENE 25 39378 - 39593 291 71 aa, chain + ## HITS:1 COG:no KEGG:pWCFS103_21 NR:ns ## KEGG: pWCFS103_21 # Name: orf21 # Def: hypothetical protein # Organism: L.plantarum # Pathway: not_defined # 1 71 1 71 71 128 91.0 7e-29 MDNKLAVIGSELPVLQAKGTYKYLKEITGNGAYYQVAWQKLADGYIALYGTTPIQINVAP ILNDIFEDEEG >gi|238617816|gb|GG669605.1| GENE 26 39597 - 40559 793 320 aa, chain + ## HITS:1 COG:no KEGG:LCAZH_p026 NR:ns ## KEGG: LCAZH_p026 # Name: ltrC # Def: putative LtrC # Organism: L.casei_Zhang # Pathway: not_defined # 1 313 1 313 374 547 96.0 1e-154 MPSKADVKAWKAQLVAQAEQQILKLTDSDRFKQYLNTLAKFHHYSARNIDLIYAQNPQAT QVAGFKQWQKAFNRTVNRGAKAIRIAAPIIKKLTPAEKKRLDTTDERAIVGYRYLPVFDV SQTSGEPVLSAKDFVKENLADHQNVTSLYNAFKDYLNQQTDLKVSEVPLETLNGAKGYFQ PSTNEIVIGGDESDNALKLKTLYHEYAHSQLHGLKSAFKDRPRAYQETQAEAVAYVAMQN IGVDTSNYSLGYVATWAKDKAVIHSALSEIQQVSNKVIELSDGLTKQLGLQEAQKEPEHD LKKLSAQELNKPYQGLQQQI >gi|238617816|gb|GG669605.1| GENE 27 40945 - 42504 592 519 aa, chain + ## HITS:1 COG:sll1503 KEGG:ns NR:ns ## COG: sll1503 COG3344 # Protein_GI_number: 16329609 # Func_class: L Replication, recombination and repair # Function: Retron-type reverse transcriptase # Organism: Synechocystis # 40 307 33 296 508 114 30.0 4e-25 MAVTIGMSSERKSVLEMTGAEARAFFLKSSSYANMVLPEYFDFQPVLEFAFSKISGGKLK SMINGNILKTAENANYSIILNKDAGYDWREVKIVHPLLYADLVEQITEDGNWRELLDRFK LFESNPKIRCISLPVKSTGKMGDTAETISNWLEELEQTSIVNSLEYTYCIRTDITNCYGS IYTHTIDWAVRGKDAAKQAAGKHDDKSFAHTLDWTVERLQCNQTNGIPQGGELFNFIAEI VLGYSDLLLSENLKDLNDVDWQVVRYRDDYRIFSNSKEVAEKIVKVLADILSGLNMHFNT KKTGLVSDIIESAIKPDKVYWNSRVPIIMPKIWDGKYRRVNYQLTLQKHLLEILWLSKKF PNSGSISKALTSFAKRLDQQKAIEESIMPLVSIVADIISKNPKAIAPGVGVLSKILLKGQ QEPSKSAEIVSKITTKLEDTPNLEYLDVWLQRLSILSGSELTFSGRICNAVKNLNNTIWD SSFVRANITLPPIIDEVKLQELKPEIPTEVFDVFSDYDA >gi|238617816|gb|GG669605.1| GENE 28 42586 - 46983 3056 1465 aa, chain + ## HITS:1 COG:no KEGG:LVIS_B23 NR:ns ## KEGG: LVIS_B23 # Name: not_defined # Def: superfamily II DNA/RNA helicase # Organism: L.brevis # Pathway: not_defined # 1 1465 1 1480 1480 1639 57.0 0 MSSNFDFLQGNEDSMGYFRAANFLEQEYAIGNYASELTSARKIAENVVKFILDQNYMDND ATFAQNLKAVKYHHLLNQQLVDLLYAIKQPGNEASHTLEQYNKQDGVAALQQVIQLMYWF AKTYCDYEGEIQPFVEPAQRSLYTTSERHMIYSLSGDNSDGNWPRYTGLEKVGETTASQD LEKDWSPNSDYLRSEAHHRISQYMKTSGVPYNLDWVELAHRKVSDTWFDDHDVHRVLLKS GFKRDAAFEKQGAKEWFQVSADQVKQAIAAVKNGRESIDGPVQATGKIELRPEQQDAVDK TAKTFKTKYKMLWNAKMRFGKTLSALKLIKKENYAKVLIMTHRPVVAEGWFDDFEKIGMP ESGYKYGSKRDQDLSLEALQREAEKYVYFASIQDLRGSKAFSGTVADKNQLVKDTQWDLV IIDEAHEGTQTDLAQQVIDGVVTPKYTRVLELSGTPFNLLDQYDADEVYTWDYVMEQQAK YSWDSEHPNGERNPYVGLPSVSMYTFEIRNRFKSPEFLDDDKSFNFREFFKVDNETGKFV YADKVNRFLDNISSRDERSNYPFSTLEFRNNLRHTLWLMPSVKSAKAMKTALENHPVFGF YNVVNIVDKDTSDNVVTATDSDLKRVKDAITDHPARTHTITLTVRKMTTGVTIKPWTGVL FLSNTNSAMQYLQAAFRAQTPYEDEEFGRKTNCYIFDFAPDRALKVMAASRQMSTGVGKL QTSDQRAKLGELLNFLPIIGEEGQGMQAYQVDTLLTQLKKVYAEKAVQSGFDDDSLYNDE LLKLTNSDLEMFNDIKAIVGQTKAEKKPDTIDVNHQGFDDEQYEKAIRAEKKPKKERSEE EQADIDRKNALKKQRKSMISVLRGISIRIPMMIYGMDIDIDQNVDINKFVDLVDAQSWSE FMPQGITKDKFRQISKYYDPEVFIEAGRIIRHRVKELDQLDPVERTLQIADVFSTFKNPD KETVLTPWRVVNMQLGKTIGGYSFFDDAYQNSTKDGKQIAEWRTTDLTDQIFGNDAHILE INSKTGLYPLYVATSLYYQEFQKLNEITAGKFSAQDLKDLWADILDQNVFAIAKTPMAKT IAERTLTGYKHYETHVVYVDDIVETSRQSIDAGVKKIKEAFKYMKFDVVIGNPPYQEQAA GTNTKQPSIYNYFMDLSYGLAQKAVLITPAKFLSNAGDTPKSWNEKMLHDSHLRIVHYEQ NSANIFPNTDIKGGVVVTLRDATQNFGEIGIFTPLPELQSILKKVTSMAKQSFNEIAFSS TSYKFSDRLLQDHPDIETRRPKGHKYDIAPNIFEVLPEIFFDKQPSDNDEYVRLLGRLKG DRVYKWIKRAYIKNHPNLDKYKVIVPHSNGSGALGEVVSTPLVGTPLVGTTQTFMTFGQF DNRSEAEAALKYVKTKFARVMLGVLKVTQHNPISVWAKVPLQNFTSESDIDWMTSVGKID NQLFSKYGLDQQEIAFIEEKVQGME >gi|238617816|gb|GG669605.1| GENE 29 46983 - 47606 334 207 aa, chain + ## HITS:1 COG:no KEGG:LA2_03930 NR:ns ## KEGG: LA2_03930 # Name: not_defined # Def: DNA methyltransferase # Organism: L.amylovorus # Pathway: not_defined # 2 205 3 201 234 182 53.0 7e-45 MSEEHLIKSNKRVKEHGEVFTPKRVVKLMLNQHELYGALHSLTATFLEPAAGEGAFLTEI LSRKLELANHMSSDIKGFEQNALIALTSLYGIELLVDNTELLVMHMYQVFYQEYLRQLSK YNAPENNKVLKSALTIIKANMAQGDALTGKNKNGDDIIFSEWTLLPVKRGVQKVQRTEYT LDAIKTNGPSVDGQPQVHGSEELTLFD >gi|238617816|gb|GG669605.1| GENE 30 48710 - 49297 417 195 aa, chain - ## HITS:1 COG:L86338 KEGG:ns NR:ns ## COG: L86338 COG4475 # Protein_GI_number: 15672471 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 179 1 179 180 183 50.0 1e-46 MDLGKVHSDLLRVLNDYFDQVDFPENGIFVVGCSTSEIVGNWMGTESRLDVGKSVFNTIF SYLKEKNVNIAIQGCEHINRALLVEKHVAMKNNLDIVSVVPAIHAGGGTQVAAYEMMEQP VEVEHITAFGGIDIGGTEIGMHVKFVQVPVRLKQSTVGKAHVTALKSRPKLIGGSRARYS FTEANTREYKLVNKN >gi|238617816|gb|GG669605.1| GENE 31 49425 - 50843 768 472 aa, chain - ## HITS:1 COG:NMA0715 KEGG:ns NR:ns ## COG: NMA0715 COG1757 # Protein_GI_number: 15793692 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Neisseria meningitidis Z2491 # 14 455 14 455 459 283 37.0 6e-76 MKNSSTKIRFSLWESLMVMVVMFAILGTMIIKYQLSPQVPILFVFTILLFYGRIKKISWD DIFDGVSDGVAPGIIPILIFLMIGILVASWLKSSTIATMMYIGFNSLSAKLFLPTVFIIC GLIGITVGSAFTTISTMGIAFMGIGHVLGFPAPVTAGAIISGAFLGNNMSPLSDTSNLTT GIAKVNLYTHLKNMTFTVVPAATLSLIAFAIIGNTSKTSDLKSIQNIMSQLSASYNISWV SLLPIAILLLLAWRKVPAIPTLLLGAISALVLVFFEDRTFTIQQMGSLLMNGNKVSGGSA VISRLMSGGGILNMLSSVSLIIIALALGGLLIKFGVVNTLIASMKDLIGTPGRLILATLI GSIGVNFLVGEQYLSIILPGETFKDSYDRLGVDRKYLSRTLATGGADVNSLVPWGVSGVF CAATLGVNPFEYVGYAFYPYLNPLMTLILGFTFVTWRYRKASRQNTTKTLEQ >gi|238617816|gb|GG669605.1| GENE 32 50919 - 51275 227 118 aa, chain - ## HITS:1 COG:no KEGG:LVIS_2212 NR:ns ## KEGG: LVIS_2212 # Name: not_defined # Def: amino acid transporter # Organism: L.brevis # Pathway: not_defined # 1 114 356 469 473 139 74.0 3e-32 MKNVNNVFLTLTNATTVIYALVYVLIAIAIIRLRQKQPDLERPYRLGNHGNGLAYSVAYL LIFGIIVIIAATLLTTDLIQSIFVIVITVVLFVIPLYIDSHKNKDWMVQVKADLQSTN >gi|238617816|gb|GG669605.1| GENE 33 51716 - 52732 702 338 aa, chain - ## HITS:1 COG:BMEII0909 KEGG:ns NR:ns ## COG: BMEII0909 COG0531 # Protein_GI_number: 17989254 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Brucella melitensis # 6 338 23 354 510 119 28.0 1e-26 MEESKKLGLGTFIGMTMALCATVRSIPSVAATGWSQITYMIFAVVFFALPVALISGELGT MLQAEGGPQLWVKTAMGEKWGFVTAWLLWVQMFPGMVMVASTIGPLWGNTFGNVALGNNH WFILANILGFYWIITVLNLKYDMAKVGGNIGVWLGVYIPIVIMLIMGIAALIKTGINPAS YLGTFSWGKLIPSFDNLSTLQYFAAISFIYTGIEMSSVFIPRLHNAKKTYTRGIFIALAG LVLMNILNAMLVANTVPDGQIQLSNITQPILLWCHILGWPTIIANIFSFMVVIGVLIQLS AWVTGPSKTMTQVARNGQLPASFGYHKVNKYGVSRNVV >gi|238617816|gb|GG669605.1| GENE 34 52769 - 54652 1690 627 aa, chain - ## HITS:1 COG:MTH1116 KEGG:ns NR:ns ## COG: MTH1116 COG0076 # Protein_GI_number: 15679127 # Func_class: E Amino acid transport and metabolism # Function: Glutamate decarboxylase and related PLP-dependent proteins # Organism: Methanothermobacter thermautotrophicus # 211 520 69 317 363 105 27.0 3e-22 MESLDKDPKYTDLNALFIGDKAENGDLYKELLNKLVDEHLGWRKNYITQDKNMISPQEQD STEFKGTVERMRNVLDELSQRIRTESVPWHSAGRYWGHMNSETLMPSLLAYNYAMLWNGN NVAYESSPATSQMEEEVGHEFASMMGYKNGWGHIVADGSLANLEGLWYARNIKSLPLAMK EVTPELVKGLDEWQLLNMPTKKIMDLVSKSGNKMDDLKAKSARSGKNLQKLGKWLVPQTK HYSWMKAADIIGIGLDQVVPVPVDNNFRMDIDALESTINRLAADHTPILGVVGVAGTTEE GAVDEIDKIVELRNKMAKQGIYFYIHVDAAYGGYLRTIFLDKDNNFVPYDKLPELHKKYG VFTEEKQYIKPEVYKAYKAFDEVESITIDPHKMGYVPYAAGGIVIQDVRMRDVISYFATY VFEKGADIPALLGAYILEGSKAGATAASVWAAHHVLPLNASGYGKLQGASVEGSHRYYNF LKDLSFNINGKTIEVHPLINPDFNMVDYVLQEKGNNSLADINKLNHDFYEEASYVKGSLY SKEYIVSHTDFAIPDYGDSPLAFVKSLGVSEDDWKQVGKVTVIRASVMTPYMNKAENFDY FAPKIKLAMKQDLENIYSRVLTKGTAK >gi|238617816|gb|GG669605.1| GENE 35 54863 - 56119 612 418 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 10 386 16 383 418 240 38 1e-62 MNIIDELKWRGAVNQQTDAEGLKNLTEHNSISLYCGVDPTGDSMHIGHLIPFMMMKRFEL AGHHPYILIGGATGSIGDPSGRKSERQLQTMEKVQHNVDALTRQMKRLFGGDSNITFVNN YDWLSKISLLDFLRDYGKLVNINTMLAKDIVASRLDVGISFTEFTYQILQSVDFLTLYSK YNVQLQIGGADQWGNITAGIDMIHKIKGPETQVYGLTIPLMLKADGTKFGKTAGGAIWLD PKKTSPYEFYQFWLNQDDRDVVKYLKYFTFLSQDEISELAKSVKEHPEERLAQRRLAEEV TRFVHGQEALTTSEKISDILFSGDITKLNVAEVQDAFGKAPSVEIKSDPKNIVDLLVDTE IEPSKRQAREDVTNGAITVNGSKVEDTEHIVDPTNHFEGKFVIVRRGKKTYFLARVTN >gi|238617816|gb|GG669605.1| GENE 36 56227 - 56550 229 107 aa, chain - ## HITS:1 COG:no KEGG:LVIS_2215 NR:ns ## KEGG: LVIS_2215 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 1 74 1 74 82 103 72.0 2e-21 MIDLNDRDVMSSTEAARRWHKADDYVRQMFRKSPEKFPEGTIRKFGKQLVVTRRGMEQVT GLSEAEAAENLSSRTISTPASRLASFSLFKDRQVGNYDNKSSVNENL >gi|238617816|gb|GG669605.1| GENE 37 56609 - 56863 144 84 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227510796|ref|ZP_03940845.1| ## NR: gi|227510796|ref|ZP_03940845.1| hypothetical protein HMPREF0496_2959 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_2959 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 84 1 84 84 135 100.0 1e-30 MQNVKVQQVSELVTKRRRLSLSDGIALLFFTPLFIILIISNWSNVDLLSGSIVFVMVASL TIGLNNLASKFAAVIKKGSDNEFK >gi|238617816|gb|GG669605.1| GENE 38 57868 - 58365 208 165 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227510798|ref|ZP_03940847.1| ## NR: gi|227510798|ref|ZP_03940847.1| hypothetical protein HMPREF0496_2961 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_2961 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 165 15 179 179 289 100.0 6e-77 MKTDYSQITIKDITREAGVSRTYFYCFFDNKESVAREAAFSFITTSLECLSISLADRNTI NKQVIEIGVKSILSHKDEVRRLLSISSARYSLTNDFQKRLKLIVEKQIHSFKCMIPERRD FLANLFSSSVISGISWIVNQQDMDTKRVSSLIIEYLSNSTWKILR >gi|238617816|gb|GG669605.1| GENE 39 58498 - 58734 142 78 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1948 NR:ns ## KEGG: Lbuc_1948 # Name: not_defined # Def: lipoprotein # Organism: L.buchneri # Pathway: not_defined # 1 78 873 950 950 105 64.0 5e-22 MNVGRHKQVRYVPVKKSINRYKTVNLSGKNKHLQKGSKIKIKNYDYSNRHDVNKTGALRY RVIGGYITGNSKYVKVIK Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:04:51 2011 Seq name: gi|238617815|gb|GG669606.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD3, whole genome shotgun sequence Length of sequence - 596383 bp Number of predicted genes - 558, with homology - 544 Number of transcription units - 323, operones - 133 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 1396 - 1433 7.0 2 2 Tu 1 . - CDS 1587 - 1742 58 ## - Prom 1809 - 1868 2.8 - Term 1964 - 2002 9.3 3 3 Tu 1 . - CDS 2233 - 3747 1208 ## COG2132 Putative multicopper oxidases - Prom 3875 - 3934 6.2 + Prom 3876 - 3935 3.3 4 4 Op 1 . + CDS 3968 - 4195 243 ## Lbuc_2173 hypothetical protein + Prom 4205 - 4264 3.7 5 4 Op 2 . + CDS 4285 - 4533 348 ## Lbuc_2172 hypothetical protein + Term 4562 - 4610 15.1 + Prom 4655 - 4714 5.8 6 5 Tu 1 . + CDS 4745 - 5296 481 ## COG0681 Signal peptidase I 7 6 Op 1 . - CDS 5468 - 6685 692 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 8 6 Op 2 5/0.037 - CDS 6697 - 7482 993 ## COG2022 Uncharacterized enzyme of thiazole biosynthesis 9 6 Op 3 . - CDS 7497 - 8141 739 ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 10 6 Op 4 . - CDS 8158 - 8352 273 ## Lbuc_2167 thiamine biosynthesis protein ThiS + Prom 8865 - 8924 9.0 11 7 Tu 1 . + CDS 8972 - 9604 751 ## COG0352 Thiamine monophosphate synthase + Term 9662 - 9701 5.0 - Term 9639 - 9695 9.2 12 8 Tu 1 . - CDS 9729 - 11162 1441 ## COG0362 6-phosphogluconate dehydrogenase - Prom 11320 - 11379 6.2 - Term 11445 - 11490 9.1 13 9 Tu 1 . - CDS 11505 - 12956 1186 ## COG0364 Glucose-6-phosphate 1-dehydrogenase - Prom 13095 - 13154 8.2 + Prom 13167 - 13226 6.2 14 10 Tu 1 . + CDS 13346 - 14110 734 ## Lbuc_2155 hypothetical protein + Term 14128 - 14173 9.3 + Prom 14126 - 14185 9.0 15 11 Tu 1 . + CDS 14263 - 15483 1076 ## COG0477 Permeases of the major facilitator superfamily + Term 15496 - 15553 10.4 - Term 15483 - 15539 16.1 16 12 Op 1 . - CDS 15551 - 16000 429 ## COG1780 Protein involved in ribonucleotide reduction 17 12 Op 2 . - CDS 16071 - 19199 1625 ## COG4485 Predicted membrane protein - Prom 19223 - 19282 5.3 - Term 19228 - 19277 -0.6 18 13 Tu 1 . - CDS 19315 - 20721 1199 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 20840 - 20899 9.6 + Prom 20733 - 20792 6.5 19 14 Tu 1 . + CDS 20932 - 21291 463 ## Lbuc_2149 hypothetical protein + Term 21337 - 21396 18.3 - Term 21448 - 21500 12.6 20 15 Tu 1 . - CDS 21522 - 22379 748 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 22406 - 22465 5.9 + Prom 22386 - 22445 7.2 21 16 Tu 1 . + CDS 22600 - 24987 1696 ## COG0474 Cation transport ATPase + Term 25015 - 25047 2.4 + Prom 25015 - 25074 6.1 22 17 Tu 1 . + CDS 25110 - 25646 564 ## Lbuc_2144 hypothetical protein + Term 25689 - 25725 4.1 + Prom 25761 - 25820 5.2 23 18 Tu 1 . + CDS 25874 - 28492 2317 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 28545 - 28591 9.4 + Prom 28552 - 28611 8.2 24 19 Tu 1 . + CDS 28780 - 29421 660 ## COG1418 Predicted HD superfamily hydrolase - Term 29334 - 29364 2.0 25 20 Op 1 . - CDS 29418 - 30146 393 ## Lbuc_2138 hypothetical protein 26 20 Op 2 . - CDS 30151 - 30654 453 ## COG2606 Uncharacterized conserved protein - Prom 30734 - 30793 6.4 + Prom 30679 - 30738 9.9 27 21 Tu 1 . + CDS 30777 - 31508 613 ## COG2188 Transcriptional regulators + Term 31519 - 31564 10.1 + Prom 31752 - 31811 8.9 28 22 Tu 1 . + CDS 31896 - 34286 1645 ## COG3957 Phosphoketolase + Term 34320 - 34362 12.8 - Term 34302 - 34354 15.8 29 23 Op 1 . - CDS 34378 - 35844 1049 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases - Prom 35876 - 35935 7.5 30 23 Op 2 . - CDS 35938 - 36846 464 ## PROTEIN SUPPORTED gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family 31 23 Op 3 . - CDS 36939 - 37409 428 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 37437 - 37496 5.2 32 24 Tu 1 . + CDS 37582 - 38592 982 ## COG0095 Lipoate-protein ligase A + Term 38619 - 38682 5.5 + Prom 38594 - 38653 5.0 33 25 Op 1 . + CDS 38778 - 39125 355 ## Lbuc_2128 hypothetical protein 34 25 Op 2 . + CDS 39136 - 39672 511 ## Lbuc_2127 hypothetical protein + Term 39711 - 39750 -0.9 - Term 39865 - 39900 1.3 35 26 Tu 1 . - CDS 39912 - 40871 917 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 40943 - 41002 5.9 + Prom 40792 - 40851 3.3 36 27 Tu 1 . + CDS 41022 - 41387 340 ## Lbuc_2125 hypothetical protein + Term 41427 - 41473 8.7 37 28 Tu 1 . - CDS 41443 - 41631 86 ## gi|227509505|ref|ZP_03939554.1| hypothetical protein HMPREF0496_1668 - Prom 41841 - 41900 4.9 + Prom 41474 - 41533 5.2 38 29 Tu 1 . + CDS 41721 - 43046 840 ## COG0642 Signal transduction histidine kinase + Term 43082 - 43146 14.1 - Term 43070 - 43132 13.7 39 30 Tu 1 . - CDS 43139 - 43717 493 ## COG3548 Predicted integral membrane protein - Prom 43831 - 43890 4.4 + Prom 43782 - 43841 7.4 40 31 Tu 1 . + CDS 43883 - 45295 1180 ## COG0531 Amino acid transporters + Term 45317 - 45365 9.1 - Term 45305 - 45351 4.0 41 32 Tu 1 . - CDS 45561 - 46748 722 ## COG0477 Permeases of the major facilitator superfamily - Prom 46928 - 46987 6.6 + Prom 46788 - 46847 6.0 42 33 Tu 1 . + CDS 46984 - 47409 509 ## Lbuc_2121 OsmC family protein + Term 47440 - 47493 9.0 - Term 47423 - 47488 18.0 43 34 Op 1 . - CDS 47500 - 48003 338 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 44 34 Op 2 . - CDS 48039 - 48944 653 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) + Prom 49223 - 49282 7.3 45 35 Tu 1 . + CDS 49367 - 51976 1617 ## COG4485 Predicted membrane protein + Term 52086 - 52139 4.6 + Prom 52008 - 52067 7.2 46 36 Tu 1 . + CDS 52196 - 53098 1023 ## COG1023 Predicted 6-phosphogluconate dehydrogenase + Term 53129 - 53172 8.5 + Prom 53101 - 53160 2.9 47 37 Tu 1 . + CDS 53261 - 54298 534 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 54321 - 54375 5.2 + Prom 54752 - 54811 6.9 48 38 Tu 1 . + CDS 54832 - 56139 1093 ## COG2211 Na+/melibiose symporter and related transporters + Prom 56141 - 56200 80.3 49 39 Op 1 . + CDS 56432 - 56656 82 ## Lbuc_2115 major facilitator superfamily protein 50 39 Op 2 . + CDS 56657 - 59401 1980 ## Lbuc_2114 alpha-L-rhamnosidase 51 39 Op 3 . + CDS 59420 - 60739 1166 ## COG0477 Permeases of the major facilitator superfamily + Term 60774 - 60827 7.1 - Term 60768 - 60809 4.3 52 40 Tu 1 . - CDS 60823 - 61506 539 ## COG1802 Transcriptional regulators - Prom 61565 - 61624 4.2 + Prom 61566 - 61625 6.1 53 41 Op 1 3/0.049 + CDS 61711 - 63336 1491 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases 54 41 Op 2 1/0.195 + CDS 63397 - 64782 958 ## COG1904 Glucuronate isomerase 55 41 Op 3 . + CDS 64794 - 65678 684 ## COG2017 Galactose mutarotase and related enzymes + Prom 65680 - 65739 5.1 56 41 Op 4 3/0.049 + CDS 65775 - 66767 882 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Term 66780 - 66834 8.3 + Prom 66909 - 66968 5.0 57 42 Tu 1 . + CDS 67001 - 68542 1364 ## COG1070 Sugar (pentulose and hexulose) kinases + Term 68641 - 68709 21.3 - Term 68638 - 68688 11.0 58 43 Tu 1 . - CDS 68715 - 69038 298 ## Lbuc_0631 hypothetical protein + Prom 69332 - 69391 8.4 59 44 Op 1 . + CDS 69494 - 70948 1407 ## COG2211 Na+/melibiose symporter and related transporters 60 44 Op 2 . + CDS 70994 - 72619 1372 ## LVIS_0149 hypothetical protein 61 44 Op 3 . + CDS 72638 - 74056 1128 ## COG1904 Glucuronate isomerase + Term 74150 - 74193 7.3 62 45 Tu 1 . - CDS 74028 - 74240 178 ## gi|227509531|ref|ZP_03939580.1| hypothetical protein HMPREF0496_1694 - Prom 74427 - 74486 3.6 + Prom 74087 - 74146 2.1 63 46 Op 1 . + CDS 74229 - 75314 969 ## COG1609 Transcriptional regulators + Prom 75355 - 75414 5.5 64 46 Op 2 . + CDS 75466 - 76644 1150 ## COG0282 Acetate kinase + Term 76653 - 76709 14.8 + Prom 76671 - 76730 2.0 65 47 Op 1 . + CDS 76756 - 77652 711 ## Lbuc_1936 hypothetical protein 66 47 Op 2 . + CDS 77682 - 78557 642 ## Lbuc_1936 hypothetical protein + Term 78747 - 78795 3.1 - Term 78735 - 78783 0.1 67 48 Op 1 . - CDS 78815 - 79411 355 ## gi|227509536|ref|ZP_03939585.1| conserved hypothetical protein - Prom 79443 - 79502 3.1 68 48 Op 2 . - CDS 79510 - 80925 1309 ## COG0477 Permeases of the major facilitator superfamily - Prom 81149 - 81208 7.0 69 49 Tu 1 . + CDS 81180 - 81803 452 ## COG1309 Transcriptional regulator + Term 81825 - 81888 21.0 + Prom 81902 - 81961 5.7 70 50 Op 1 24/0.000 + CDS 82005 - 82937 237 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 71 50 Op 2 . + CDS 82921 - 83613 595 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component 72 51 Tu 1 . - CDS 83729 - 83923 118 ## - Prom 83948 - 84007 5.8 + Prom 83934 - 83993 6.6 73 52 Op 1 . + CDS 84017 - 84763 634 ## COG2513 PEP phosphonomutase and related enzymes 74 52 Op 2 . + CDS 84750 - 85658 1049 ## COG2513 PEP phosphonomutase and related enzymes 75 52 Op 3 . + CDS 85754 - 87064 1358 ## COG0477 Permeases of the major facilitator superfamily + Term 87085 - 87147 6.1 76 53 Op 1 . - CDS 87207 - 88190 694 ## COG3049 Penicillin V acylase and related amidases 77 53 Op 2 . - CDS 88246 - 89175 796 ## COG2364 Predicted membrane protein - Prom 89216 - 89275 8.1 78 54 Op 1 31/0.000 - CDS 89383 - 89955 513 ## COG0765 ABC-type amino acid transport system, permease component 79 54 Op 2 . - CDS 90055 - 90900 904 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 90930 - 90989 8.0 - Term 91027 - 91084 10.6 80 55 Tu 1 . - CDS 91135 - 92151 1000 ## COG2017 Galactose mutarotase and related enzymes - Prom 92289 - 92348 7.3 + Prom 92165 - 92224 7.9 81 56 Tu 1 . + CDS 92342 - 92527 154 ## gi|227509549|ref|ZP_03939598.1| hypothetical protein HMPREF0496_1712 + Prom 92543 - 92602 2.1 82 57 Tu 1 . + CDS 92660 - 93760 1054 ## COG1609 Transcriptional regulators + Term 93876 - 93909 -0.2 + Prom 93843 - 93902 9.0 83 58 Op 1 1/0.195 + CDS 93996 - 95369 1497 ## COG0477 Permeases of the major facilitator superfamily + Prom 95371 - 95430 2.2 84 58 Op 2 . + CDS 95450 - 96874 1426 ## COG2160 L-arabinose isomerase + Term 97060 - 97107 7.2 + Prom 97089 - 97148 7.6 85 59 Op 1 . + CDS 97185 - 97745 478 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 86 59 Op 2 . + CDS 97760 - 98617 865 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 98641 - 98681 8.1 - Term 98630 - 98668 1.4 87 60 Tu 1 . - CDS 98673 - 99491 915 ## COG0428 Predicted divalent heavy-metal cations transporter - Prom 99547 - 99606 8.8 + Prom 99561 - 99620 7.4 88 61 Tu 1 . + CDS 99716 - 100396 543 ## COG0406 Fructose-2,6-bisphosphatase + Term 100418 - 100469 -0.8 + Prom 100566 - 100625 3.4 89 62 Tu 1 . + CDS 100700 - 102325 1265 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 102351 - 102390 3.2 + Prom 102427 - 102486 5.4 90 63 Op 1 . + CDS 102507 - 102707 101 ## gi|227509558|ref|ZP_03939607.1| hypothetical protein HMPREF0496_1721 91 63 Op 2 . + CDS 102735 - 103133 351 ## Lbuc_1935 hypothetical protein + Term 103137 - 103174 3.9 + Prom 103236 - 103295 5.4 92 64 Op 1 . + CDS 103410 - 104267 680 ## COG1131 ABC-type multidrug transport system, ATPase component 93 64 Op 2 . + CDS 104264 - 105790 771 ## LC705_01548 ABC transporter permease + Term 105814 - 105866 12.9 - Term 105807 - 105848 9.1 94 65 Tu 1 . - CDS 105855 - 106280 464 ## LJ0243 hypothetical protein - Prom 106393 - 106452 2.4 + Prom 106739 - 106798 3.4 95 66 Tu 1 . + CDS 106833 - 108047 1168 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 96 67 Tu 1 . - CDS 108064 - 108432 220 ## Lbuc_1930 hypothetical protein - Prom 108461 - 108520 4.3 97 68 Op 1 . - CDS 108534 - 109271 387 ## Lbuc_0017 hypothetical protein - Prom 109375 - 109434 6.3 98 68 Op 2 . - CDS 109450 - 110292 751 ## Lbuc_0838 hypothetical protein - Prom 110315 - 110374 8.1 - Term 110343 - 110375 3.2 99 69 Op 1 . - CDS 110392 - 110877 245 ## gi|227509567|ref|ZP_03939616.1| hypothetical protein HMPREF0496_1730 100 69 Op 2 . - CDS 110832 - 111239 216 ## gi|227509568|ref|ZP_03939617.1| hypothetical protein HMPREF0496_1731 - Prom 111271 - 111330 3.1 - Term 111305 - 111343 -0.7 101 70 Tu 1 . - CDS 111456 - 111704 123 ## gi|227509569|ref|ZP_03939618.1| hypothetical protein HMPREF0496_1732 - Prom 111819 - 111878 5.3 - Term 112170 - 112230 11.3 102 71 Tu 1 . - CDS 112238 - 112933 608 ## Lbuc_0802 hypothetical protein - Prom 112991 - 113050 9.4 103 72 Tu 1 . + CDS 113328 - 115142 1439 ## Lbuc_0803 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD + Term 115151 - 115208 4.1 - Term 115061 - 115103 2.0 104 73 Op 1 . - CDS 115196 - 115627 301 ## Lbuc_2082 hypothetical protein - Prom 115647 - 115706 2.4 105 73 Op 2 . - CDS 115708 - 116301 421 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) 106 73 Op 3 . - CDS 116301 - 116753 244 ## LCABL_17670 transcriptional regulator (TetR/AcrR family) - Prom 116936 - 116995 5.7 - Term 116971 - 117025 11.5 107 74 Tu 1 . - CDS 117085 - 118479 895 ## COG0477 Permeases of the major facilitator superfamily - Prom 118509 - 118568 7.3 - Term 118512 - 118558 7.5 108 75 Op 1 . - CDS 118591 - 119454 805 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 119499 - 119558 4.4 109 75 Op 2 . - CDS 119601 - 119738 66 ## - Prom 119830 - 119889 9.6 + Prom 120197 - 120256 3.9 110 76 Tu 1 . + CDS 120418 - 120537 80 ## + Term 120690 - 120743 -0.1 + Prom 121157 - 121216 11.4 111 77 Op 1 . + CDS 121280 - 121453 87 ## gi|227509582|ref|ZP_03939631.1| hypothetical protein HMPREF0496_1745 + Term 121490 - 121538 -0.9 + Prom 121482 - 121541 3.4 112 77 Op 2 . + CDS 121570 - 121794 186 ## gi|227509583|ref|ZP_03939632.1| hypothetical protein HMPREF0496_1746 + Term 121846 - 121893 12.2 + Prom 121848 - 121907 4.2 113 78 Tu 1 . + CDS 121949 - 123763 1338 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Term 123785 - 123833 8.9 114 79 Tu 1 . - CDS 123916 - 125661 1673 ## COG1109 Phosphomannomutase - Prom 125738 - 125797 7.5 + Prom 125738 - 125797 5.8 115 80 Tu 1 . + CDS 125857 - 126852 783 ## COG1609 Transcriptional regulators + Term 126861 - 126909 8.2 + Prom 126912 - 126971 7.2 116 81 Tu 1 . + CDS 127176 - 130022 2063 ## COG2409 Predicted drug exporters of the RND superfamily + Term 130044 - 130089 13.2 - Term 130024 - 130084 22.1 117 82 Tu 1 . - CDS 130136 - 130975 462 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 131012 - 131071 6.1 + Prom 130943 - 131002 4.5 118 83 Tu 1 . + CDS 131074 - 131400 393 ## Lbuc_2075 hypothetical protein + Term 131482 - 131525 0.2 - Term 131373 - 131425 11.1 119 84 Op 1 . - CDS 131444 - 131677 286 ## Lbuc_2070 hypothetical protein - Prom 131702 - 131761 4.1 120 84 Op 2 . - CDS 131763 - 132140 373 ## COG0509 Glycine cleavage system H protein (lipoate-binding) - Prom 132164 - 132223 10.0 + Prom 132133 - 132192 5.7 121 85 Tu 1 . + CDS 132286 - 133305 902 ## COG0095 Lipoate-protein ligase A + Term 133309 - 133369 14.0 - Term 133298 - 133354 6.8 122 86 Op 1 . - CDS 133383 - 134366 834 ## COG0385 Predicted Na+-dependent transporter 123 86 Op 2 . - CDS 134426 - 136168 1806 ## COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase 124 86 Op 3 . - CDS 136168 - 136320 65 ## - Prom 136431 - 136490 5.3 - Term 136551 - 136599 13.0 125 87 Op 1 . - CDS 136635 - 137903 974 ## COG1171 Threonine dehydratase - Prom 137934 - 137993 1.9 - Term 137917 - 137971 17.7 126 87 Op 2 . - CDS 137995 - 138714 511 ## gi|227509596|ref|ZP_03939645.1| hypothetical protein HMPREF0496_1759 - Prom 138734 - 138793 7.1 + Prom 139036 - 139095 3.6 127 88 Tu 1 . + CDS 139118 - 139291 62 ## + Prom 139324 - 139383 5.0 128 89 Op 1 1/0.195 + CDS 139473 - 141176 1529 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] + Prom 141205 - 141264 3.1 129 89 Op 2 . + CDS 141285 - 142325 943 ## COG0059 Ketol-acid reductoisomerase + Term 142486 - 142532 8.5 + Prom 142462 - 142521 3.1 130 90 Tu 1 . + CDS 142553 - 143335 210 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein + Term 143396 - 143454 5.1 + Prom 143617 - 143676 7.0 131 91 Tu 1 . + CDS 143720 - 152146 6023 ## Lbuc_2059 LPXTG-motif cell wall anchor domain-containing protein + Term 152172 - 152212 -0.3 + Prom 152538 - 152597 2.9 132 92 Op 1 . + CDS 152618 - 153643 923 ## COG1893 Ketopantoate reductase 133 92 Op 2 . + CDS 153719 - 154597 596 ## COG3001 Fructosamine-3-kinase + Term 154603 - 154642 8.4 - Term 154586 - 154636 11.3 134 93 Tu 1 . - CDS 154660 - 156438 1313 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 156466 - 156525 10.5 - Term 156568 - 156597 2.1 135 94 Op 1 . - CDS 156625 - 156828 280 ## COG1278 Cold shock proteins - Prom 156958 - 157017 6.0 - Term 156943 - 156995 0.6 136 94 Op 2 . - CDS 157023 - 159053 1515 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 159207 - 159266 9.3 - Term 159236 - 159275 6.2 137 95 Tu 1 . - CDS 159307 - 159726 367 ## Lbuc_2047 OsmC family protein - Prom 159757 - 159816 3.9 + Prom 159716 - 159775 3.9 138 96 Op 1 . + CDS 159807 - 160502 548 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) 139 96 Op 2 . + CDS 160505 - 160684 228 ## gi|227509609|ref|ZP_03939658.1| hypothetical protein HMPREF0496_1772 140 97 Tu 1 . - CDS 160687 - 161058 295 ## COG1396 Predicted transcriptional regulators - Prom 161099 - 161158 2.8 141 98 Tu 1 . + CDS 161293 - 162090 575 ## Lbuc_1936 hypothetical protein + Term 162122 - 162179 10.4 - Term 162110 - 162167 10.4 142 99 Op 1 . - CDS 162223 - 163170 796 ## gi|227509612|ref|ZP_03939661.1| hypothetical protein HMPREF0496_1775 - Prom 163270 - 163329 3.9 143 99 Op 2 . - CDS 163399 - 164220 721 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase - Prom 164310 - 164369 5.3 + Prom 164298 - 164357 7.6 144 100 Tu 1 . + CDS 164380 - 164502 114 ## + Term 164516 - 164556 1.1 + Prom 164546 - 164605 7.3 145 101 Tu 1 . + CDS 164636 - 165289 853 ## COG3619 Predicted membrane protein + Term 165305 - 165344 6.2 - Term 165291 - 165332 4.1 146 102 Op 1 17/0.000 - CDS 165345 - 166010 717 ## COG0569 K+ transport systems, NAD-binding component 147 102 Op 2 . - CDS 166051 - 167388 1047 ## COG0168 Trk-type K+ transport systems, membrane components - Prom 167529 - 167588 8.4 + Prom 167447 - 167506 5.8 148 103 Tu 1 . + CDS 167535 - 168776 1117 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases + Term 168833 - 168900 15.6 - Term 168822 - 168885 5.2 149 104 Tu 1 . - CDS 168974 - 169420 350 ## Lbuc_2032 hypothetical protein - Prom 169480 - 169539 5.0 + Prom 169449 - 169508 5.2 150 105 Tu 1 . + CDS 169535 - 170503 736 ## COG0328 Ribonuclease HI - Term 170393 - 170429 -0.5 151 106 Tu 1 . - CDS 170497 - 171057 588 ## COG4843 Uncharacterized protein conserved in bacteria - Prom 171186 - 171245 6.2 + Prom 170981 - 171040 8.6 152 107 Tu 1 . + CDS 171257 - 171697 432 ## COG2764 Uncharacterized protein conserved in bacteria + Term 171729 - 171780 7.1 + Prom 171723 - 171782 4.7 153 108 Tu 1 . + CDS 171819 - 172493 539 ## COG0637 Predicted phosphatase/phosphohexomutase + Term 172551 - 172589 2.3 - Term 172424 - 172467 -0.9 154 109 Tu 1 . - CDS 172475 - 172843 434 ## COG3189 Uncharacterized conserved protein - Prom 172896 - 172955 2.1 + Prom 172814 - 172873 5.0 155 110 Tu 1 . + CDS 172943 - 173512 344 ## COG2094 3-methyladenine DNA glycosylase + Term 173558 - 173595 -0.9 - Term 173966 - 174023 12.3 156 111 Op 1 1/0.195 - CDS 174059 - 174559 453 ## COG1267 Phosphatidylglycerophosphatase A and related proteins - Term 174576 - 174617 5.4 157 111 Op 2 . - CDS 174638 - 175405 752 ## COG0024 Methionine aminopeptidase - Prom 175548 - 175607 5.3 158 112 Tu 1 . - CDS 175615 - 175782 232 ## Lbuc_2023 hypothetical protein - Prom 175911 - 175970 6.5 + Prom 175799 - 175858 4.8 159 113 Tu 1 . + CDS 176001 - 176168 133 ## gi|227509629|ref|ZP_03939678.1| hypothetical protein HMPREF0496_1792 + Term 176191 - 176247 3.4 - Term 176333 - 176387 8.3 160 114 Tu 1 . - CDS 176432 - 178435 1774 ## COG3590 Predicted metalloendopeptidase - Prom 178459 - 178518 2.3 + Prom 178742 - 178801 5.2 161 115 Tu 1 . + CDS 178927 - 179823 685 ## COG2326 Uncharacterized conserved protein + Term 179862 - 179918 20.7 - Term 180034 - 180067 3.1 162 116 Tu 1 . - CDS 180102 - 180326 290 ## gi|227509633|ref|ZP_03939682.1| hypothetical protein HMPREF0496_1796 - Prom 180560 - 180619 5.8 + Prom 180457 - 180516 4.6 163 117 Tu 1 . + CDS 180603 - 180938 412 ## Lbuc_2018 hypothetical protein + Prom 180946 - 181005 8.0 164 118 Op 1 . + CDS 181107 - 182432 956 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase 165 118 Op 2 . + CDS 182511 - 182744 286 ## Lbuc_0845 hypothetical protein + Term 182805 - 182850 6.0 + Prom 182746 - 182805 3.9 166 119 Tu 1 . + CDS 182941 - 183675 563 ## COG0730 Predicted permeases + Term 183700 - 183745 9.6 - Term 183686 - 183733 11.7 167 120 Op 1 . - CDS 183775 - 184029 299 ## gi|227509639|ref|ZP_03939688.1| hypothetical protein HMPREF0496_1802 - Prom 184098 - 184157 1.9 - Term 184057 - 184099 1.3 168 120 Op 2 . - CDS 184163 - 184759 537 ## COG1396 Predicted transcriptional regulators - Prom 184811 - 184870 9.1 + Prom 184755 - 184814 9.0 169 121 Op 1 9/0.012 + CDS 184899 - 185606 418 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) 170 121 Op 2 . + CDS 185593 - 185925 197 ## COG4392 Predicted membrane protein + Prom 186034 - 186093 6.9 171 122 Tu 1 . + CDS 186120 - 186590 445 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 186611 - 186647 3.2 - Term 186580 - 186647 13.4 172 123 Tu 1 . - CDS 186749 - 187819 987 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - Prom 187859 - 187918 7.1 + Prom 187865 - 187924 5.6 173 124 Tu 1 . + CDS 188090 - 188530 292 ## COG1607 Acyl-CoA hydrolase + Term 188594 - 188633 7.6 - Term 188573 - 188627 12.1 174 125 Tu 1 . - CDS 188665 - 189432 903 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Prom 189466 - 189525 6.0 + Prom 189505 - 189564 7.0 175 126 Tu 1 . + CDS 189592 - 190029 547 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 190053 - 190093 5.0 + Prom 190091 - 190150 6.7 176 127 Op 1 3/0.049 + CDS 190248 - 191354 825 ## COG5438 Predicted multitransmembrane protein 177 127 Op 2 . + CDS 191354 - 192133 705 ## COG5438 Predicted multitransmembrane protein + Term 192141 - 192188 12.1 178 128 Op 1 22/0.000 - CDS 192705 - 193949 1001 ## COG0014 Gamma-glutamyl phosphate reductase 179 128 Op 2 . - CDS 194012 - 194857 652 ## COG0263 Glutamate 5-kinase - Prom 194877 - 194936 5.8 - Term 195237 - 195275 3.0 180 129 Tu 1 . - CDS 195311 - 196276 857 ## COG5632 N-acetylmuramoyl-L-alanine amidase - Prom 196496 - 196555 5.7 - Term 196432 - 196480 8.1 181 130 Tu 1 . - CDS 196577 - 197050 542 ## COG0735 Fe2+/Zn2+ uptake regulation proteins - Prom 197134 - 197193 9.8 182 131 Tu 1 . - CDS 197200 - 197703 360 ## Lbuc_1996 hypothetical protein - Prom 197887 - 197946 4.0 + Prom 197717 - 197776 6.3 183 132 Tu 1 . + CDS 197802 - 198854 809 ## COG2706 3-carboxymuconate cyclase + Term 198881 - 198925 12.3 - Term 199156 - 199214 17.0 184 133 Op 1 . - CDS 199252 - 200091 676 ## COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) 185 133 Op 2 . - CDS 200165 - 202531 1265 ## COG1199 Rad3-related DNA helicases - Prom 202742 - 202801 6.4 + Prom 202541 - 202600 4.1 186 134 Op 1 . + CDS 202662 - 203255 494 ## Lbuc_1992 hypothetical protein 187 134 Op 2 . + CDS 203257 - 203466 196 ## Lbuc_1991 hypothetical protein + Term 203504 - 203567 23.2 - Term 203490 - 203555 19.0 188 135 Op 1 . - CDS 203563 - 204552 824 ## COG0253 Diaminopimelate epimerase 189 135 Op 2 . - CDS 204584 - 205987 1147 ## COG0527 Aspartokinases - Prom 206043 - 206102 8.9 + Prom 206565 - 206624 5.7 190 136 Tu 1 . + CDS 206699 - 208006 1293 ## COG0019 Diaminopimelate decarboxylase + Prom 208323 - 208382 70.5 191 137 Op 1 6/0.024 + CDS 208588 - 209298 897 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase 192 137 Op 2 . + CDS 209303 - 210463 1063 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 193 137 Op 3 6/0.024 + CDS 210512 - 211402 862 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase + Prom 211407 - 211466 2.3 194 138 Op 1 . + CDS 211490 - 212263 740 ## COG0289 Dihydrodipicolinate reductase 195 138 Op 2 . + CDS 212281 - 213468 1105 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Prom 213484 - 213543 8.4 196 139 Op 1 . + CDS 213568 - 214650 1089 ## COG0136 Aspartate-semialdehyde dehydrogenase + Prom 214829 - 214888 6.8 197 139 Op 2 . + CDS 214919 - 217645 2335 ## COG0474 Cation transport ATPase + Term 217659 - 217723 11.0 - Term 217643 - 217709 7.0 198 140 Tu 1 . - CDS 217713 - 219185 1222 ## COG0477 Permeases of the major facilitator superfamily - Prom 219245 - 219304 3.9 - Term 219518 - 219568 11.4 199 141 Op 1 . - CDS 219608 - 219937 328 ## Lbuc_1976 hypothetical protein 200 141 Op 2 25/0.000 - CDS 220016 - 221086 1081 ## COG0687 Spermidine/putrescine-binding periplasmic protein 201 141 Op 3 36/0.000 - CDS 221083 - 221904 689 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 202 141 Op 4 30/0.000 - CDS 221904 - 222692 485 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 203 141 Op 5 . - CDS 222727 - 223812 850 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 204 141 Op 6 . - CDS 223875 - 224246 343 ## Lbuc_1971 hypothetical protein - Prom 224298 - 224357 9.0 + Prom 224246 - 224305 7.2 205 142 Tu 1 . + CDS 224339 - 225313 897 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 206 143 Tu 1 . + CDS 225509 - 226546 847 ## Lbuc_1969 hypothetical protein + Prom 226555 - 226614 2.3 207 144 Tu 1 . + CDS 226665 - 226901 115 ## Lbuc_1967 hypothetical protein + Prom 227163 - 227222 6.1 208 145 Tu 1 . + CDS 227269 - 228135 954 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Term 228156 - 228206 7.4 - Term 228144 - 228192 6.1 209 146 Op 1 . - CDS 228250 - 228432 256 ## Lbuc_1966 hypothetical protein 210 146 Op 2 . - CDS 228507 - 228821 390 ## Lbuc_1965 hypothetical protein - Prom 228851 - 228910 5.5 211 147 Op 1 34/0.000 - CDS 228934 - 229587 470 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 212 147 Op 2 4/0.037 - CDS 229587 - 231017 1101 ## COG1122 ABC-type cobalt transport system, ATPase component 213 147 Op 3 . - CDS 231033 - 231623 597 ## COG4721 Predicted membrane protein - Prom 231777 - 231836 1.7 + Prom 232207 - 232266 8.0 214 148 Tu 1 . + CDS 232325 - 233113 664 ## COG0561 Predicted hydrolases of the HAD superfamily 215 149 Tu 1 . - CDS 233099 - 234037 660 ## COG3049 Penicillin V acylase and related amidases - Prom 234107 - 234166 6.1 + Prom 234082 - 234141 4.5 216 150 Tu 1 . + CDS 234161 - 234787 429 ## Lbuc_1959 hypothetical protein + Term 234984 - 235034 7.1 - Term 234968 - 235025 7.4 217 151 Op 1 . - CDS 235067 - 236947 1622 ## Lbuc_1952 hypothetical protein 218 151 Op 2 . - CDS 236967 - 237530 544 ## COG2173 D-alanyl-D-alanine dipeptidase 219 151 Op 3 . - CDS 237576 - 238223 360 ## PROTEIN SUPPORTED gi|90022317|ref|YP_528144.1| ribosomal protein S15 - Prom 238247 - 238306 8.2 + Prom 238230 - 238289 5.9 220 152 Tu 1 . + CDS 238404 - 238727 432 ## Lbuc_1949 hypothetical protein + Term 238847 - 238897 -0.6 + TRNA 238783 - 238857 41.7 # Arg TCG 0 0 + Prom 239091 - 239150 6.7 221 153 Op 1 . + CDS 239206 - 239316 74 ## 222 153 Op 2 . + CDS 239261 - 240862 1331 ## Lbuc_0544 lipoprotein + Term 240905 - 240938 1.4 223 154 Tu 1 . + CDS 241188 - 241997 278 ## gi|227509696|ref|ZP_03939745.1| hypothetical protein HMPREF0496_1859 + Prom 242188 - 242247 6.1 224 155 Tu 1 . + CDS 242269 - 243483 310 ## gi|227509697|ref|ZP_03939746.1| hypothetical protein HMPREF0496_1860 + Term 243696 - 243745 1.1 225 156 Tu 1 . - CDS 243748 - 244041 141 ## gi|227509699|ref|ZP_03939748.1| hypothetical protein HMPREF0496_1862 - Prom 244276 - 244335 5.7 - Term 244256 - 244311 13.4 226 157 Op 1 . - CDS 244406 - 245302 460 ## Lbuc_1746 hypothetical protein 227 157 Op 2 . - CDS 245299 - 245931 330 ## Lbuc_1747 hypothetical protein - Prom 246062 - 246121 5.5 228 158 Tu 1 . + CDS 246354 - 248117 1265 ## COG0514 Superfamily II DNA helicase + Term 248187 - 248257 6.5 - Term 248115 - 248158 2.9 229 159 Op 1 . - CDS 248278 - 249717 565 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 230 159 Op 2 . - CDS 249721 - 250332 561 ## COG4684 Predicted membrane protein + Prom 250527 - 250586 10.2 231 160 Op 1 . + CDS 250810 - 251661 767 ## COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase 232 160 Op 2 . + CDS 251648 - 252601 827 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation - Term 252695 - 252730 3.1 233 161 Tu 1 . - CDS 252756 - 253367 558 ## LPST_C2482 extracellular protein - Prom 253439 - 253498 6.3 + Prom 253735 - 253794 7.3 234 162 Tu 1 . + CDS 253987 - 255324 951 ## COG0531 Amino acid transporters - Term 255323 - 255374 10.1 235 163 Tu 1 . - CDS 255404 - 258058 1755 ## COG4485 Predicted membrane protein - Prom 258092 - 258151 5.5 - Term 258141 - 258195 13.3 236 164 Tu 1 . - CDS 258285 - 259034 786 ## Lbuc_2257 hypothetical protein - Prom 259212 - 259271 7.2 + Prom 259176 - 259235 6.1 237 165 Tu 1 . + CDS 259264 - 260022 714 ## COG0730 Predicted permeases + Term 260097 - 260124 -0.8 238 166 Tu 1 . - CDS 260119 - 260547 423 ## gi|227509713|ref|ZP_03939762.1| hypothetical protein HMPREF0496_1876 - Prom 260569 - 260628 3.6 239 167 Tu 1 . - CDS 260690 - 261118 585 ## gi|227509714|ref|ZP_03939763.1| hypothetical protein HMPREF0496_1877 - Prom 261138 - 261197 4.4 - Term 261517 - 261577 1.1 240 168 Op 1 4/0.037 - CDS 261626 - 263224 1406 ## COG0531 Amino acid transporters - Prom 263245 - 263304 7.3 241 168 Op 2 . - CDS 263436 - 265055 1235 ## COG0531 Amino acid transporters - Prom 265297 - 265356 80.4 - Term 265631 - 265689 7.9 242 169 Op 1 . - CDS 265725 - 266207 522 ## COG0590 Cytosine/adenosine deaminases 243 169 Op 2 . - CDS 266222 - 267622 320 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 - Prom 267747 - 267806 5.8 - Term 267905 - 267947 2.8 244 170 Tu 1 . - CDS 268009 - 269622 1565 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 269711 - 269770 5.2 - Term 269729 - 269767 3.0 245 171 Tu 1 . - CDS 269815 - 270297 487 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 270326 - 270385 6.2 246 172 Tu 1 . - CDS 270411 - 270920 481 ## COG1881 Phospholipid-binding protein - Prom 270961 - 271020 3.2 247 173 Tu 1 . - CDS 271058 - 271684 203 ## Lbuc_1895 hypothetical protein - Prom 271728 - 271787 6.4 + Prom 271607 - 271666 7.6 248 174 Tu 1 . + CDS 271785 - 272234 377 ## COG2153 Predicted acyltransferase + Term 272263 - 272321 14.2 + Prom 272493 - 272552 4.9 249 175 Tu 1 . + CDS 272645 - 273568 719 ## gi|227509725|ref|ZP_03939774.1| hypothetical protein HMPREF0496_1888 + Term 273793 - 273839 5.0 + Prom 273656 - 273715 5.9 250 176 Tu 1 . + CDS 273877 - 275232 996 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Prom 275248 - 275307 6.3 251 177 Op 1 . + CDS 275332 - 275820 434 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 252 177 Op 2 . + CDS 275894 - 276322 392 ## gi|227509728|ref|ZP_03939777.1| hypothetical protein HMPREF0496_1891 + Term 276392 - 276420 -0.0 - Term 276366 - 276419 8.2 253 178 Tu 1 . - CDS 276420 - 277106 470 ## COG0517 FOG: CBS domain - Prom 277148 - 277207 4.2 + Prom 277110 - 277169 9.7 254 179 Tu 1 . + CDS 277317 - 279974 2169 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase - Term 280020 - 280072 14.8 255 180 Op 1 . - CDS 280119 - 280670 583 ## COG1846 Transcriptional regulators - Prom 280762 - 280821 3.3 - Term 280800 - 280837 2.1 256 180 Op 2 . - CDS 280871 - 282220 1457 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 282317 - 282376 4.4 - Term 282332 - 282369 4.1 257 181 Tu 1 . - CDS 282387 - 283907 1442 ## COG1288 Predicted membrane protein - Prom 283933 - 283992 9.8 258 182 Tu 1 . - CDS 284338 - 285174 842 ## Lbuc_0628 peptidase M10A and M12B matrixin and adamalysin + Prom 285277 - 285336 4.8 259 183 Tu 1 . + CDS 285360 - 286322 836 ## COG1052 Lactate dehydrogenase and related dehydrogenases 260 184 Op 1 . - CDS 286428 - 286940 375 ## COG4283 Uncharacterized conserved protein 261 184 Op 2 13/0.000 - CDS 287036 - 287809 188 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 262 184 Op 3 9/0.012 - CDS 287802 - 288701 951 ## COG4120 ABC-type uncharacterized transport system, permease component 263 184 Op 4 . - CDS 288698 - 289699 1105 ## COG2984 ABC-type uncharacterized transport system, periplasmic component + Prom 290329 - 290388 2.2 264 185 Op 1 2/0.110 + CDS 290408 - 291226 734 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 265 185 Op 2 . + CDS 291270 - 292298 994 ## COG2515 1-aminocyclopropane-1-carboxylate deaminase + Term 292321 - 292358 -0.9 + Prom 292427 - 292486 6.2 266 185 Op 3 . + CDS 292546 - 293679 1028 ## COG1062 Zn-dependent alcohol dehydrogenases, class III + Term 293779 - 293841 21.1 - Term 293776 - 293819 13.3 267 186 Op 1 . - CDS 293831 - 295663 1253 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases - Prom 295698 - 295757 4.0 268 186 Op 2 . - CDS 295763 - 296464 624 ## LDBND_0118 hypothetical protein - Prom 296648 - 296707 4.8 - Term 296672 - 296712 6.6 269 187 Tu 1 . - CDS 296748 - 298463 1104 ## Lbuc_0544 lipoprotein - Prom 298713 - 298772 7.2 + Prom 298741 - 298800 5.5 270 188 Tu 1 . + CDS 298820 - 299386 253 ## gi|227509746|ref|ZP_03939795.1| hypothetical protein HMPREF0496_1909 + Prom 299435 - 299494 2.2 271 189 Op 1 28/0.000 + CDS 299533 - 300666 1020 ## COG0420 DNA repair exonuclease 272 189 Op 2 . + CDS 300666 - 303803 2373 ## COG0419 ATPase involved in DNA repair + Prom 303864 - 303923 10.5 273 190 Op 1 . + CDS 303970 - 305193 1134 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family 274 190 Op 2 2/0.110 + CDS 305212 - 305544 404 ## COG0509 Glycine cleavage system H protein (lipoate-binding) 275 190 Op 3 2/0.110 + CDS 305632 - 306378 442 ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 276 190 Op 4 3/0.049 + CDS 306381 - 307253 457 ## COG0846 NAD-dependent protein deacetylases, SIR2 family 277 190 Op 5 . + CDS 307266 - 308312 933 ## COG0095 Lipoate-protein ligase A + Term 308373 - 308427 2.1 + Prom 308418 - 308477 7.8 278 191 Op 1 . + CDS 308562 - 309002 98 ## LCAZH_1112 hypothetical protein 279 191 Op 2 . + CDS 309022 - 309798 589 ## LJ0291 Lj965 prophage protein 280 191 Op 3 . + CDS 309834 - 310046 279 ## gi|227509756|ref|ZP_03939805.1| hypothetical protein HMPREF0496_1919 + Term 310124 - 310152 -0.9 281 192 Tu 1 . - CDS 310141 - 310482 271 ## Lbuc_1262 hypothetical protein - Prom 310508 - 310567 8.0 + Prom 310451 - 310510 10.0 282 193 Tu 1 . + CDS 310581 - 311399 376 ## Lbuc_1261 hypothetical protein + Term 311416 - 311459 1.1 + Prom 311586 - 311645 8.1 283 194 Tu 1 . + CDS 311741 - 312859 778 ## COG0371 Glycerol dehydrogenase and related enzymes + Term 312876 - 312927 13.1 284 195 Tu 1 . + CDS 313280 - 313675 357 ## COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase + Term 313695 - 313731 5.0 + Prom 313927 - 313986 6.8 285 196 Tu 1 . + CDS 314042 - 318175 2694 ## COG3513 Uncharacterized protein conserved in bacteria + Term 318190 - 318235 1.1 + Prom 318186 - 318245 4.7 286 197 Op 1 4/0.037 + CDS 318380 - 319294 556 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair 287 197 Op 2 . + CDS 319272 - 319577 179 ## COG3512 Uncharacterized protein conserved in bacteria 288 197 Op 3 . + CDS 319574 - 320254 408 ## Lbuc_1874 CRISPR-associated Csn2 family protein - Term 321546 - 321596 8.3 289 198 Op 1 . - CDS 321624 - 321869 209 ## gi|227509765|ref|ZP_03939814.1| hypothetical protein HMPREF0496_1928 - Prom 321909 - 321968 6.3 - Term 321978 - 322030 -0.4 290 198 Op 2 . - CDS 322070 - 322831 375 ## COG2771 DNA-binding HTH domain-containing proteins - Prom 322864 - 322923 8.7 + Prom 322842 - 322901 10.7 291 199 Op 1 . + CDS 323091 - 324152 876 ## COG0687 Spermidine/putrescine-binding periplasmic protein 292 199 Op 2 . + CDS 324130 - 324540 337 ## COG0347 Nitrogen regulatory protein PII 293 199 Op 3 30/0.000 + CDS 324555 - 325682 869 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 294 199 Op 4 36/0.000 + CDS 325694 - 326602 801 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 295 199 Op 5 . + CDS 326604 - 327404 724 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 296 199 Op 6 . + CDS 327419 - 329062 1274 ## COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold 297 199 Op 7 . + CDS 329075 - 330454 1249 ## COG4992 Ornithine/acetylornithine aminotransferase 298 199 Op 8 . + CDS 330521 - 331342 560 ## COG0388 Predicted amidohydrolase + Term 331367 - 331413 10.5 - Term 331349 - 331405 16.1 299 200 Tu 1 . - CDS 331431 - 333299 1267 ## Lbuc_1948 lipoprotein - Prom 333379 - 333438 5.3 - Term 333545 - 333597 6.3 300 201 Op 1 . - CDS 333614 - 334177 509 ## COG3477 Predicted periplasmic/secreted protein - Prom 334242 - 334301 2.6 301 201 Op 2 . - CDS 334305 - 335759 1209 ## COG0531 Amino acid transporters - Prom 335824 - 335883 9.6 + Prom 335832 - 335891 8.8 302 202 Tu 1 . + CDS 336037 - 337410 1270 ## COG0160 4-aminobutyrate aminotransferase and related aminotransferases + Term 337463 - 337524 13.2 - Term 337452 - 337511 8.9 303 203 Tu 1 . - CDS 337565 - 338419 824 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases - Prom 338551 - 338610 4.3 + Prom 338500 - 338559 6.8 304 204 Tu 1 . + CDS 338699 - 339346 628 ## COG4300 Predicted permease, cadmium resistance protein + Term 339516 - 339560 -0.8 305 205 Op 1 . - CDS 339343 - 340221 492 ## COG1409 Predicted phosphohydrolases 306 205 Op 2 . - CDS 340236 - 340946 660 ## COG1387 Histidinol phosphatase and related hydrolases of the PHP family - Prom 341045 - 341104 1.7 307 206 Op 1 8/0.012 - CDS 341111 - 342145 854 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 308 206 Op 2 5/0.037 - CDS 342150 - 342947 541 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 309 206 Op 3 3/0.049 - CDS 342947 - 343771 646 ## COG4132 ABC-type uncharacterized transport system, permease component 310 206 Op 4 . - CDS 343773 - 344855 1047 ## COG1840 ABC-type Fe3+ transport system, periplasmic component - Prom 345069 - 345128 5.3 + Prom 344917 - 344976 6.0 311 207 Tu 1 . + CDS 345193 - 346431 1010 ## COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase + Term 346471 - 346518 2.2 + Prom 346619 - 346678 5.1 312 208 Tu 1 . + CDS 346734 - 347051 400 ## gi|227509788|ref|ZP_03939837.1| hypothetical protein HMPREF0496_1951 + Term 347067 - 347106 8.0 - Term 347281 - 347339 7.2 313 209 Tu 1 . - CDS 347375 - 348562 1053 ## COG3835 Sugar diacid utilization regulator - Prom 348667 - 348726 8.6 + Prom 348670 - 348729 5.5 314 210 Tu 1 . + CDS 348865 - 350052 775 ## COG1015 Phosphopentomutase + Term 350190 - 350233 0.1 + Prom 350272 - 350331 4.3 315 211 Tu 1 . + CDS 350361 - 350915 190 ## LAF_1698 hypothetical protein + Term 350996 - 351045 7.0 316 212 Tu 1 . - CDS 351293 - 352210 665 ## lp_3091 hypothetical protein - Prom 352327 - 352386 7.0 + Prom 352074 - 352133 3.4 317 213 Tu 1 . + CDS 352321 - 352923 341 ## LVIS_0229 transcriptional regulator + Prom 353057 - 353116 4.1 318 214 Op 1 . + CDS 353164 - 353991 477 ## COG4990 Uncharacterized protein conserved in bacteria 319 214 Op 2 . + CDS 354013 - 355047 693 ## LVIS_0239 periplasmic protease + Term 355113 - 355175 6.1 320 215 Tu 1 . - CDS 355189 - 355830 279 ## COG1309 Transcriptional regulator - Prom 355881 - 355940 2.7 - Term 355882 - 355936 5.2 321 216 Op 1 . - CDS 355948 - 356955 557 ## COG3594 Fucose 4-O-acetylase and related acetyltransferases - Prom 357041 - 357100 6.0 322 216 Op 2 . - CDS 357231 - 360332 1883 ## COG4485 Predicted membrane protein - Prom 360406 - 360465 10.6 + Prom 360547 - 360606 7.0 323 217 Tu 1 . + CDS 360635 - 361621 840 ## COG5585 NAD+--asparagine ADP-ribosyltransferase + Term 361684 - 361736 4.1 - Term 361673 - 361723 6.7 324 218 Tu 1 . - CDS 361727 - 362782 839 ## Lbuc_1873 G-D-S-L family lipolytic protein - Prom 362826 - 362885 5.5 325 219 Tu 1 . + CDS 363046 - 363768 829 ## COG0657 Esterase/lipase + Term 363795 - 363843 5.0 + Prom 363770 - 363829 6.8 326 220 Op 1 . + CDS 363975 - 364754 595 ## COG4705 Uncharacterized membrane-anchored protein conserved in bacteria 327 220 Op 2 . + CDS 364747 - 365796 538 ## Lbuc_1891 acyltransferase 3 328 221 Op 1 . - CDS 365913 - 366512 491 ## Lbuc_1871 hypothetical protein 329 221 Op 2 . - CDS 366541 - 367431 745 ## COG4189 Predicted transcriptional regulator - Prom 367478 - 367537 9.5 + Prom 367521 - 367580 7.2 330 222 Tu 1 . + CDS 367702 - 368673 1023 ## PROTEIN SUPPORTED gi|90020424|ref|YP_526251.1| ribosomal protein L11 methyltransferase + Prom 368728 - 368787 3.5 331 223 Tu 1 . + CDS 368822 - 370093 1183 ## COG0477 Permeases of the major facilitator superfamily + Term 370118 - 370156 -0.5 - Term 370166 - 370201 3.4 332 224 Op 1 . - CDS 370259 - 371833 1492 ## COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold 333 224 Op 2 . - CDS 371909 - 372085 59 ## + Prom 371885 - 371944 3.8 334 225 Op 1 . + CDS 371992 - 373176 820 ## COG3410 Uncharacterized conserved protein 335 225 Op 2 . + CDS 373255 - 373617 544 ## Lbuc_1865 hypothetical protein + Term 373628 - 373673 13.2 - Term 373616 - 373661 13.2 336 226 Op 1 . - CDS 373685 - 374365 645 ## Lbuc_1864 abortive infection protein 337 226 Op 2 . - CDS 374367 - 374717 369 ## Lbuc_1863 Glyoxalase/bleomycin resistance protein/dioxygenase - Prom 374747 - 374806 4.2 + Prom 375132 - 375191 3.1 338 227 Tu 1 . + CDS 375265 - 376800 1361 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 376831 - 376871 5.1 - Term 376818 - 376859 5.2 339 228 Op 1 . - CDS 376903 - 378291 1270 ## COG2211 Na+/melibiose symporter and related transporters 340 228 Op 2 7/0.012 - CDS 378320 - 379798 1179 ## COG0366 Glycosidases 341 228 Op 3 . - CDS 379803 - 381452 1040 ## COG0366 Glycosidases - Prom 381554 - 381613 5.2 + Prom 381518 - 381577 10.3 342 229 Op 1 4/0.037 + CDS 381642 - 382628 711 ## COG1609 Transcriptional regulators 343 229 Op 2 . + CDS 382696 - 383904 737 ## COG0477 Permeases of the major facilitator superfamily + Term 383924 - 383976 6.3 - Term 383915 - 383961 2.6 344 230 Tu 1 . - CDS 383980 - 384318 303 ## gi|227509819|ref|ZP_03939868.1| hypothetical protein HMPREF0496_1982 - Prom 384367 - 384426 2.0 + Prom 384383 - 384442 4.4 345 231 Op 1 . + CDS 384474 - 384890 400 ## gi|227509820|ref|ZP_03939869.1| hypothetical protein HMPREF0496_1983 346 231 Op 2 . + CDS 384911 - 385234 291 ## COG2076 Membrane transporters of cations and cationic drugs + Term 385312 - 385362 1.1 + Prom 385339 - 385398 5.0 347 232 Tu 1 . + CDS 385420 - 385656 88 ## gi|227509822|ref|ZP_03939871.1| hypothetical protein HMPREF0496_1985 - Term 385685 - 385733 1.2 348 233 Op 1 . - CDS 385753 - 386664 1155 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 349 233 Op 2 . - CDS 386718 - 389150 1696 ## Lbuc_1851 Xaa-Pro dipeptidyl-peptidase (EC:3.4.14.11) - Prom 389245 - 389304 3.6 350 234 Tu 1 . - CDS 389306 - 390526 864 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain - Prom 390595 - 390654 5.0 + Prom 390530 - 390589 5.7 351 235 Tu 1 1/0.195 + CDS 390703 - 392556 1454 ## COG3250 Beta-galactosidase/beta-glucuronidase + Term 392569 - 392610 1.2 + Prom 392577 - 392636 5.7 352 236 Tu 1 . + CDS 392658 - 394112 1446 ## COG2211 Na+/melibiose symporter and related transporters + Term 394130 - 394163 1.4 353 237 Tu 1 . - CDS 394244 - 394444 222 ## COG1278 Cold shock proteins + Prom 394658 - 394717 4.3 354 238 Op 1 . + CDS 394808 - 395557 716 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 355 238 Op 2 1/0.195 + CDS 395619 - 396767 1068 ## COG0475 Kef-type K+ transport systems, membrane components 356 238 Op 3 . + CDS 396811 - 397239 458 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 357 238 Op 4 . + CDS 397246 - 397809 473 ## COG0194 Guanylate kinase 358 239 Op 1 . + CDS 397913 - 398356 125 ## COG0735 Fe2+/Zn2+ uptake regulation proteins 359 239 Op 2 . + CDS 398432 - 399094 644 ## gi|227509834|ref|ZP_03939883.1| conserved hypothetical protein 360 239 Op 3 . + CDS 399094 - 399930 714 ## Lbuc_1837 hypothetical protein + Term 399968 - 400010 7.0 361 240 Op 1 16/0.000 + CDS 400411 - 401151 521 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 362 240 Op 2 31/0.000 + CDS 401175 - 402008 883 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 363 240 Op 3 17/0.000 + CDS 402005 - 402643 620 ## COG0765 ABC-type amino acid transport system, permease component 364 240 Op 4 . + CDS 402659 - 403366 599 ## COG0765 ABC-type amino acid transport system, permease component + Term 403429 - 403481 15.3 - Term 403417 - 403469 11.5 365 241 Tu 1 . - CDS 403471 - 404133 550 ## COG1285 Uncharacterized membrane protein - Prom 404195 - 404254 3.4 - Term 404280 - 404319 7.1 366 242 Op 1 . - CDS 404345 - 405748 1273 ## COG0531 Amino acid transporters 367 242 Op 2 . - CDS 405801 - 407084 591 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 - Prom 407322 - 407381 7.3 + Prom 407302 - 407361 8.0 368 243 Tu 1 . + CDS 407404 - 409020 1314 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 409078 - 409111 1.3 + Prom 409171 - 409230 5.5 369 244 Tu 1 6/0.024 + CDS 409423 - 410907 1066 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 410918 - 410952 2.1 + Prom 410933 - 410992 8.6 370 245 Tu 1 6/0.024 + CDS 411188 - 412807 1287 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 412850 - 412901 7.2 + Prom 413134 - 413193 8.4 371 246 Op 1 21/0.000 + CDS 413236 - 414861 1153 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 414900 - 414938 2.2 + Prom 414912 - 414971 3.6 372 246 Op 2 49/0.000 + CDS 414992 - 415912 798 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 373 246 Op 3 44/0.000 + CDS 415927 - 416961 931 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 374 246 Op 4 44/0.000 + CDS 416972 - 418069 1028 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 375 246 Op 5 . + CDS 418066 - 419028 757 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 419043 - 419097 16.9 - Term 419089 - 419124 -0.6 376 247 Tu 1 . - CDS 419133 - 419786 626 ## COG0406 Fructose-2,6-bisphosphatase - Prom 419816 - 419875 5.8 + Prom 419820 - 419879 7.0 377 248 Tu 1 . + CDS 420062 - 422356 1691 ## COG3973 Superfamily I DNA and RNA helicases + Term 422367 - 422406 -0.4 + Prom 422405 - 422464 8.4 378 249 Op 1 . + CDS 422492 - 423415 574 ## COG1072 Panthothenate kinase 379 249 Op 2 . + CDS 423437 - 425053 1202 ## COG0519 GMP synthase, PP-ATPase domain/subunit + Term 425136 - 425184 5.5 380 250 Tu 1 . + CDS 425480 - 425896 382 ## SEQ_0816 phage protein + Prom 426133 - 426192 7.6 381 251 Tu 1 . + CDS 426429 - 428963 2058 ## COG0308 Aminopeptidase N + Term 429002 - 429067 3.2 + Prom 429058 - 429117 6.9 382 252 Op 1 . + CDS 429269 - 429859 419 ## COG1286 Uncharacterized membrane protein, required for colicin V production 383 252 Op 2 . + CDS 429846 - 430529 675 ## LVIS_1020 Zn-dependent protease + Term 430550 - 430601 8.0 384 253 Tu 1 . - CDS 430614 - 431912 778 ## COG0534 Na+-driven multidrug efflux pump - Prom 431977 - 432036 4.7 - Term 432007 - 432046 8.4 385 254 Op 1 . - CDS 432070 - 432774 878 ## LCAZH_0296 dihydrodipicolinate synthase/N-acetylneuraminate lyase - Prom 432798 - 432857 2.5 386 254 Op 2 . - CDS 432859 - 434103 963 ## COG0477 Permeases of the major facilitator superfamily + Prom 434128 - 434187 4.0 387 255 Tu 1 . + CDS 434264 - 434848 588 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family + Term 435017 - 435066 15.6 + Prom 435059 - 435118 9.2 388 256 Tu 1 . + CDS 435143 - 436255 893 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase 389 257 Tu 1 . - CDS 436345 - 437103 501 ## COG0708 Exonuclease III - Prom 437143 - 437202 5.2 - Term 437226 - 437282 16.1 390 258 Op 1 . - CDS 437311 - 438030 560 ## Lbuc_1790 hypothetical protein 391 258 Op 2 . - CDS 438030 - 439505 1203 ## COG0477 Permeases of the major facilitator superfamily - Prom 439556 - 439615 7.6 + Prom 439572 - 439631 8.6 392 259 Op 1 . + CDS 439672 - 440175 482 ## Lbuc_1788 regulatory protein MerR 393 259 Op 2 . + CDS 440221 - 440697 394 ## COG0716 Flavodoxins + Term 440706 - 440749 5.7 + Prom 440730 - 440789 7.9 394 260 Tu 1 . + CDS 440816 - 441997 937 ## COG2230 Cyclopropane fatty acid synthase and related methyltransferases + Term 442034 - 442100 18.0 + Prom 442104 - 442163 8.2 395 261 Tu 1 . + CDS 442244 - 443251 792 ## COG1052 Lactate dehydrogenase and related dehydrogenases + Term 443265 - 443323 18.0 - Term 443253 - 443308 17.9 396 262 Op 1 . - CDS 443344 - 443844 304 ## gi|227509872|ref|ZP_03939921.1| hypothetical protein HMPREF0496_2035 397 262 Op 2 . - CDS 443956 - 444393 357 ## COG0789 Predicted transcriptional regulators - Prom 444429 - 444488 4.0 + Prom 444400 - 444459 4.1 398 263 Op 1 . + CDS 444559 - 445302 924 ## COG4221 Short-chain alcohol dehydrogenase of unknown specificity 399 263 Op 2 1/0.195 + CDS 445361 - 445774 362 ## COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain 400 263 Op 3 . + CDS 445780 - 446100 346 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit + Prom 446119 - 446178 9.1 401 264 Tu 1 . + CDS 446205 - 446768 588 ## COG0450 Peroxiredoxin + Term 446802 - 446859 13.0 + Prom 446820 - 446879 4.7 402 265 Op 1 . + CDS 446903 - 447433 300 ## lse_0555 hypothetical protein 403 265 Op 2 . + CDS 447506 - 448186 469 ## COG0730 Predicted permeases + Term 448246 - 448279 -0.5 404 266 Tu 1 . - CDS 448196 - 448966 645 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 448986 - 449045 2.4 405 267 Tu 1 . - CDS 449103 - 449744 490 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases - Prom 449870 - 449929 7.2 + Prom 449874 - 449933 9.4 406 268 Op 1 . + CDS 449980 - 450294 171 ## gi|227509882|ref|ZP_03939931.1| hypothetical protein HMPREF0496_2045 407 268 Op 2 . + CDS 450251 - 452362 1554 ## Lbuc_2321 hypothetical protein + Term 452392 - 452441 12.3 - Term 452378 - 452429 5.1 408 269 Op 1 . - CDS 452451 - 453635 868 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 409 269 Op 2 12/0.000 - CDS 453657 - 454118 406 ## COG3610 Uncharacterized conserved protein 410 269 Op 3 . - CDS 454122 - 454898 591 ## COG2966 Uncharacterized conserved protein - Prom 454930 - 454989 7.3 + Prom 455706 - 455765 3.3 411 270 Op 1 2/0.110 + CDS 455802 - 456677 779 ## COG1897 Homoserine trans-succinylase 412 270 Op 2 . + CDS 456674 - 457987 1295 ## COG2873 O-acetylhomoserine sulfhydrylase + Prom 459221 - 459280 80.3 413 271 Op 1 10/0.012 + CDS 459463 - 460671 989 ## COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase) 414 271 Op 2 13/0.000 + CDS 460684 - 461433 763 ## COG0548 Acetylglutamate kinase 415 271 Op 3 . + CDS 461454 - 462623 1039 ## COG4992 Ornithine/acetylornithine aminotransferase + Term 462639 - 462688 10.0 - Term 462626 - 462676 13.1 416 272 Op 1 . - CDS 462699 - 463028 461 ## COG0393 Uncharacterized conserved protein - Prom 463087 - 463146 3.0 417 272 Op 2 . - CDS 463177 - 464562 1277 ## Lbuc_1767 hypothetical protein 418 272 Op 3 . - CDS 464584 - 466266 1278 ## Lbuc_1766 hypothetical protein - Prom 466340 - 466399 7.5 + Prom 466314 - 466373 4.7 419 273 Op 1 . + CDS 466554 - 466646 61 ## 420 273 Op 2 . + CDS 466676 - 467152 311 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 421 273 Op 3 . + CDS 467154 - 468029 316 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit + Prom 468107 - 468166 5.9 422 274 Tu 1 . + CDS 468190 - 468363 290 ## gi|227509898|ref|ZP_03939947.1| hypothetical protein HMPREF0496_2061 + Term 468436 - 468483 1.6 + Prom 468488 - 468547 10.4 423 275 Op 1 . + CDS 468606 - 469388 630 ## COG4420 Predicted membrane protein + Term 469398 - 469441 1.0 + Prom 469432 - 469491 6.9 424 275 Op 2 . + CDS 469525 - 470115 355 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 470141 - 470180 4.3 + Prom 470171 - 470230 8.3 425 276 Op 1 . + CDS 470274 - 470510 176 ## COG1476 Predicted transcriptional regulators 426 276 Op 2 . + CDS 470500 - 471033 434 ## Lbuc_1756 hypothetical protein 427 276 Op 3 . + CDS 471046 - 471213 71 ## gi|227512837|ref|ZP_03942886.1| hypothetical protein HMPREF0497_1959 + Term 471236 - 471275 4.1 428 277 Tu 1 . - CDS 471185 - 471295 57 ## - Prom 471441 - 471500 4.6 + Prom 471300 - 471359 8.8 429 278 Tu 1 . + CDS 471387 - 473663 1540 ## COG0178 Excinuclease ATPase subunit + Term 473692 - 473730 0.5 + Prom 473701 - 473760 10.9 430 279 Op 1 . + CDS 473787 - 473924 94 ## 431 279 Op 2 . + CDS 473938 - 474336 383 ## Lbuc_1755 hypothetical protein 432 279 Op 3 . + CDS 474412 - 474633 214 ## Lbuc_1754 transcriptional regulator + Term 474873 - 474922 10.9 + Prom 474919 - 474978 7.2 433 280 Op 1 . + CDS 475003 - 475914 627 ## COG1230 Co/Zn/Cd efflux system component 434 280 Op 2 . + CDS 475958 - 476605 623 ## COG1321 Mn-dependent transcriptional regulator + Term 476622 - 476661 1.6 + Prom 476625 - 476684 3.4 435 281 Op 1 12/0.000 + CDS 476719 - 477498 791 ## COG2966 Uncharacterized conserved protein 436 281 Op 2 . + CDS 477512 - 477994 305 ## COG3610 Uncharacterized conserved protein + Term 478000 - 478047 9.1 + Prom 478090 - 478149 4.6 437 282 Op 1 5/0.037 + CDS 478188 - 478508 276 ## COG1695 Predicted transcriptional regulators 438 282 Op 2 . + CDS 478501 - 479133 678 ## COG4709 Predicted membrane protein 439 282 Op 3 . + CDS 479130 - 480071 697 ## Lbuc_1746 hypothetical protein + Term 480076 - 480136 3.1 + Prom 480076 - 480135 5.6 440 283 Op 1 . + CDS 480245 - 480934 398 ## COG0671 Membrane-associated phospholipid phosphatase 441 283 Op 2 . + CDS 481012 - 481515 389 ## Lbuc_1742 GCN5-like N-acetyltransferase + Term 481680 - 481729 -0.3 + Prom 481672 - 481731 3.4 442 284 Tu 1 . + CDS 481872 - 483353 1286 ## COG0833 Amino acid transporters + Term 483366 - 483414 14.2 + Prom 483384 - 483443 8.0 443 285 Op 1 . + CDS 483487 - 484533 1017 ## COG3684 Tagatose-1,6-bisphosphate aldolase + Prom 484535 - 484594 1.5 444 285 Op 2 . + CDS 484615 - 485253 596 ## COG1428 Deoxynucleoside kinases + Term 485468 - 485508 9.1 + Prom 485491 - 485550 3.9 445 286 Tu 1 . + CDS 485588 - 486871 1005 ## COG0172 Seryl-tRNA synthetase + Term 486930 - 486987 0.4 + TRNA 487459 - 487531 85.5 # Val TAC 0 0 + TRNA 487534 - 487606 81.4 # Lys TTT 0 0 + TRNA 487625 - 487706 60.0 # Leu TAG 0 0 + TRNA 487723 - 487796 80.6 # Thr AGT 0 0 + TRNA 487801 - 487872 79.2 # Gly GCC 0 0 + TRNA 487930 - 488003 67.6 # Arg ACG 0 0 + TRNA 488039 - 488112 88.2 # Pro TGG 0 0 + TRNA 488177 - 488250 78.9 # Pro CGG 0 0 446 287 Tu 1 . - CDS 489769 - 489987 83 ## - Prom 490011 - 490070 2.2 + Prom 489898 - 489957 7.1 447 288 Op 1 3/0.049 + CDS 489986 - 490453 307 ## PROTEIN SUPPORTED gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 448 288 Op 2 . + CDS 490469 - 492964 2328 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 493086 - 493124 6.3 + Prom 492968 - 493027 7.3 449 289 Op 1 58/0.000 + CDS 493200 - 496808 3003 ## COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit 450 289 Op 2 . + CDS 496854 - 500498 2840 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit + Term 500517 - 500555 6.1 - Term 500505 - 500543 1.1 451 290 Tu 1 . - CDS 500586 - 501284 181 ## COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases - Prom 501411 - 501470 4.5 + Prom 501228 - 501287 5.5 452 291 Op 1 56/0.000 + CDS 501521 - 501934 702 ## PROTEIN SUPPORTED gi|227509927|ref|ZP_03939976.1| 30S ribosomal protein S12 453 291 Op 2 51/0.000 + CDS 501989 - 502459 807 ## PROTEIN SUPPORTED gi|227509928|ref|ZP_03939977.1| ribosomal protein S7 + Term 502489 - 502519 1.1 454 291 Op 3 4/0.037 + CDS 502535 - 504637 2050 ## COG0480 Translation elongation factors (GTPases) + Term 504654 - 504688 6.2 + Prom 504826 - 504885 7.9 455 292 Op 1 40/0.000 + CDS 504962 - 505345 651 ## PROTEIN SUPPORTED gi|227509930|ref|ZP_03939979.1| 30S ribosomal protein S10 456 292 Op 2 58/0.000 + CDS 505374 - 506009 1090 ## PROTEIN SUPPORTED gi|227509931|ref|ZP_03939980.1| 50S ribosomal protein L3 457 292 Op 3 61/0.000 + CDS 506027 - 506650 1038 ## PROTEIN SUPPORTED gi|227509932|ref|ZP_03939981.1| 50S ribosomal protein L4 458 292 Op 4 61/0.000 + CDS 506650 - 506937 468 ## PROTEIN SUPPORTED gi|227509933|ref|ZP_03939982.1| ribosomal protein L23 459 292 Op 5 60/0.000 + CDS 506963 - 507802 1360 ## PROTEIN SUPPORTED gi|227509934|ref|ZP_03939983.1| 50S ribosomal protein L2 460 292 Op 6 59/0.000 + CDS 507847 - 508122 483 ## PROTEIN SUPPORTED gi|227509935|ref|ZP_03939984.1| 30S ribosomal protein S19 461 292 Op 7 61/0.000 + CDS 508139 - 508495 564 ## PROTEIN SUPPORTED gi|227509936|ref|ZP_03939985.1| 50S ribosomal protein L22 462 292 Op 8 50/0.000 + CDS 508499 - 509164 1128 ## PROTEIN SUPPORTED gi|227509937|ref|ZP_03939986.1| 30S ribosomal protein S3 463 292 Op 9 50/0.000 + CDS 509167 - 509601 755 ## PROTEIN SUPPORTED gi|227509938|ref|ZP_03939987.1| 50S ribosomal protein L16 464 292 Op 10 50/0.000 + CDS 509591 - 509785 314 ## PROTEIN SUPPORTED gi|227509939|ref|ZP_03939988.1| ribosomal protein L29 465 292 Op 11 50/0.000 + CDS 509810 - 510076 438 ## PROTEIN SUPPORTED gi|227509940|ref|ZP_03939989.1| ribosomal protein S17 466 292 Op 12 57/0.000 + CDS 510134 - 510502 595 ## PROTEIN SUPPORTED gi|227509941|ref|ZP_03939990.1| ribosomal protein L14 467 292 Op 13 48/0.000 + CDS 510531 - 510839 512 ## PROTEIN SUPPORTED gi|227509942|ref|ZP_03939991.1| ribosomal protein L24 468 292 Op 14 4/0.037 + CDS 510870 - 511412 907 ## PROTEIN SUPPORTED gi|227509943|ref|ZP_03939992.1| 50S ribosomal protein L5 469 292 Op 15 . + CDS 511429 - 511614 328 ## PROTEIN SUPPORTED gi|227509944|ref|ZP_03939993.1| ribosomal protein S14 470 292 Op 16 55/0.000 + CDS 511643 - 512041 652 ## PROTEIN SUPPORTED gi|227509945|ref|ZP_03939994.1| 30S ribosomal protein S8 471 292 Op 17 46/0.000 + CDS 512069 - 512608 913 ## PROTEIN SUPPORTED gi|227509946|ref|ZP_03939995.1| ribosomal protein L6 472 292 Op 18 56/0.000 + CDS 512643 - 512999 587 ## PROTEIN SUPPORTED gi|227509947|ref|ZP_03939996.1| 50S ribosomal protein L18 473 292 Op 19 50/0.000 + CDS 513021 - 513524 826 ## PROTEIN SUPPORTED gi|227509948|ref|ZP_03939997.1| 30S ribosomal protein S5 474 292 Op 20 48/0.000 + CDS 513539 - 513724 294 ## PROTEIN SUPPORTED gi|227509949|ref|ZP_03939998.1| ribosomal protein L30 475 292 Op 21 53/0.000 + CDS 513750 - 514184 723 ## PROTEIN SUPPORTED gi|227509950|ref|ZP_03939999.1| ribosomal protein L15 476 292 Op 22 28/0.000 + CDS 514184 - 515503 769 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 477 292 Op 23 6/0.024 + CDS 515537 - 516193 637 ## COG0563 Adenylate kinase and related kinases + Prom 516232 - 516291 6.1 478 293 Op 1 . + CDS 516322 - 516540 310 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 479 293 Op 2 . + CDS 516576 - 516695 212 ## PROTEIN SUPPORTED gi|116334246|ref|YP_795773.1| 50S ribosomal protein L36 480 293 Op 3 48/0.000 + CDS 516722 - 517087 602 ## PROTEIN SUPPORTED gi|227509954|ref|ZP_03940003.1| ribosomal protein S13 481 293 Op 4 32/0.000 + CDS 517112 - 517501 645 ## PROTEIN SUPPORTED gi|227509955|ref|ZP_03940004.1| ribosomal protein S11 + Prom 517503 - 517562 5.6 482 293 Op 5 50/0.000 + CDS 517597 - 518547 935 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 483 293 Op 6 6/0.024 + CDS 518576 - 518959 553 ## PROTEIN SUPPORTED gi|227509957|ref|ZP_03940006.1| ribosomal protein L17 + Prom 519074 - 519133 5.3 484 294 Op 1 15/0.000 + CDS 519154 - 519987 589 ## COG1122 ABC-type cobalt transport system, ATPase component 485 294 Op 2 34/0.000 + CDS 519957 - 520829 406 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 486 294 Op 3 8/0.012 + CDS 520826 - 521620 576 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 487 294 Op 4 7/0.012 + CDS 521657 - 522424 565 ## COG0101 Pseudouridylate synthase 488 294 Op 5 59/0.000 + CDS 522471 - 522998 920 ## PROTEIN SUPPORTED gi|227509962|ref|ZP_03940011.1| 50S ribosomal protein L13 489 294 Op 6 . + CDS 523012 - 523404 657 ## PROTEIN SUPPORTED gi|227509963|ref|ZP_03940012.1| 30S ribosomal protein S9 + Term 523423 - 523468 6.6 490 295 Tu 1 . + CDS 523764 - 524360 541 ## COG4684 Predicted membrane protein + Term 524385 - 524422 -0.7 - Term 524370 - 524412 3.5 491 296 Tu 1 . - CDS 524424 - 524705 332 ## Lbuc_1693 hypothetical protein - Prom 524832 - 524891 7.4 + Prom 524784 - 524843 9.8 492 297 Op 1 . + CDS 524926 - 525501 538 ## COG1705 Muramidase (flagellum-specific) 493 297 Op 2 . + CDS 525517 - 526089 496 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins + Term 526137 - 526175 1.6 + Prom 526093 - 526152 4.4 494 298 Tu 1 . + CDS 526199 - 527359 711 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) + Term 527364 - 527390 -0.6 + Prom 527375 - 527434 6.3 495 299 Op 1 . + CDS 527542 - 529692 1817 ## COG0210 Superfamily I DNA and RNA helicases 496 299 Op 2 . + CDS 529719 - 530321 411 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 497 299 Op 3 4/0.037 + CDS 530378 - 532390 1309 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 498 299 Op 4 1/0.195 + CDS 532393 - 533550 805 ## COG4851 Protein involved in sex pheromone biosynthesis + Prom 533552 - 533611 6.3 499 300 Op 1 31/0.000 + CDS 533635 - 533946 379 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 500 300 Op 2 21/0.000 + CDS 533946 - 535409 403 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 501 300 Op 3 2/0.110 + CDS 535409 - 536830 1283 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 502 300 Op 4 2/0.110 + CDS 536846 - 537850 816 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase + Term 537868 - 537915 8.2 503 300 Op 5 . + CDS 537930 - 539300 965 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase + Term 539323 - 539370 8.2 + Prom 539658 - 539717 6.7 504 301 Op 1 16/0.000 + CDS 539737 - 540936 1083 ## COG4175 ABC-type proline/glycine betaine transport system, ATPase component 505 301 Op 2 14/0.000 + CDS 540929 - 541780 828 ## COG4176 ABC-type proline/glycine betaine transport system, permease component 506 301 Op 3 . + CDS 541794 - 542696 698 ## COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components + Term 542759 - 542822 23.0 + Prom 543041 - 543100 7.9 507 302 Op 1 2/0.110 + CDS 543127 - 543795 667 ## COG0274 Deoxyribose-phosphate aldolase 508 302 Op 2 9/0.012 + CDS 543824 - 545038 1140 ## COG1015 Phosphopentomutase 509 302 Op 3 . + CDS 545035 - 545751 816 ## COG0813 Purine-nucleoside phosphorylase 510 302 Op 4 . + CDS 545794 - 546741 709 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain 511 302 Op 5 . + CDS 546776 - 548092 1197 ## COG0213 Thymidine phosphorylase + Term 548149 - 548189 2.5 + Prom 548161 - 548220 9.6 512 303 Op 1 . + CDS 548461 - 548907 359 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 513 303 Op 2 4/0.037 + CDS 548937 - 549407 458 ## COG1846 Transcriptional regulators 514 303 Op 3 . + CDS 549404 - 550387 687 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 515 303 Op 4 . + CDS 550462 - 550701 336 ## Lbuc_1670 acyl carrier protein 516 303 Op 5 26/0.000 + CDS 550762 - 551631 808 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 517 303 Op 6 11/0.012 + CDS 551631 - 552362 237 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 518 303 Op 7 4/0.037 + CDS 552382 - 553611 1175 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 519 303 Op 8 4/0.037 + CDS 553615 - 554100 367 ## COG0511 Biotin carboxyl carrier protein 520 303 Op 9 4/0.037 + CDS 554106 - 554522 335 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 521 303 Op 10 4/0.037 + CDS 554565 - 555944 1009 ## COG0439 Biotin carboxylase 522 303 Op 11 10/0.012 + CDS 555925 - 556770 562 ## COG0777 Acetyl-CoA carboxylase beta subunit 523 303 Op 12 . + CDS 556763 - 557533 726 ## COG0825 Acetyl-CoA carboxylase alpha subunit 524 303 Op 13 . + CDS 557560 - 558318 794 ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) + Prom 558338 - 558397 5.7 525 304 Op 1 1/0.195 + CDS 558629 - 559621 556 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase 526 304 Op 2 . + CDS 559706 - 560242 532 ## COG1268 Uncharacterized conserved protein + Term 560299 - 560338 -0.1 - Term 560280 - 560333 14.2 527 305 Op 1 2/0.110 - CDS 560371 - 561726 1200 ## COG2610 H+/gluconate symporter and related permeases 528 305 Op 2 . - CDS 561794 - 563350 1565 ## COG1070 Sugar (pentulose and hexulose) kinases - Prom 563370 - 563429 4.4 + Prom 563554 - 563613 6.9 529 306 Op 1 . + CDS 563667 - 564518 579 ## COG1737 Transcriptional regulators 530 306 Op 2 . + CDS 564598 - 565359 472 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) - Term 565178 - 565213 -0.6 531 307 Tu 1 . - CDS 565407 - 565772 240 ## Lbuc_1654 hypothetical protein - Prom 565836 - 565895 7.3 + Prom 565768 - 565827 6.2 532 308 Op 1 1/0.195 + CDS 565898 - 566899 905 ## COG0673 Predicted dehydrogenases and related proteins 533 308 Op 2 . + CDS 566917 - 568212 969 ## COG0513 Superfamily II DNA and RNA helicases + Term 568220 - 568267 -0.4 + TRNA 568264 - 568336 59.3 # Arg CCT 0 0 - Term 568338 - 568390 13.4 534 309 Tu 1 . - CDS 568394 - 569665 933 ## OEOE_0742 hypothetical protein - Prom 569706 - 569765 5.3 - Term 569772 - 569819 12.1 535 310 Op 1 . - CDS 569844 - 569996 121 ## gi|227510009|ref|ZP_03940058.1| hypothetical protein HMPREF0496_2172 536 310 Op 2 7/0.012 - CDS 570028 - 570447 337 ## COG2246 Predicted membrane protein 537 310 Op 3 . - CDS 570455 - 571402 590 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 571627 - 571686 10.8 + Prom 571613 - 571672 10.0 538 311 Op 1 . + CDS 571829 - 572926 903 ## COG0381 UDP-N-acetylglucosamine 2-epimerase 539 311 Op 2 . + CDS 572947 - 573846 580 ## COG1295 Predicted membrane protein + Term 573916 - 573960 7.5 - Term 573902 - 573950 10.8 540 312 Tu 1 . - CDS 573980 - 574435 539 ## COG0716 Flavodoxins + Prom 574440 - 574499 2.7 541 313 Op 1 2/0.110 + CDS 574537 - 575337 837 ## COG2137 Uncharacterized protein conserved in bacteria + Prom 575341 - 575400 2.4 542 313 Op 2 . + CDS 575430 - 575981 336 ## COG3557 Uncharacterized domain/protein associated with RNAses G and E + Term 575997 - 576045 9.3 543 314 Tu 1 . - CDS 576031 - 576219 112 ## - Prom 576373 - 576432 6.1 + Prom 576012 - 576071 6.3 544 315 Tu 1 . + CDS 576134 - 577213 913 ## COG0628 Predicted permease + Prom 577216 - 577275 7.2 545 316 Tu 1 . + CDS 577322 - 577732 395 ## COG0615 Cytidylyltransferase + Prom 577745 - 577804 3.0 546 317 Op 1 . + CDS 577834 - 578682 662 ## Lbuc_1639 hypothetical protein 547 317 Op 2 . + CDS 578696 - 580720 1265 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC + Term 580735 - 580770 4.2 + Prom 580732 - 580791 3.4 548 318 Op 1 . + CDS 580819 - 582393 1219 ## COG4108 Peptide chain release factor RF-3 549 318 Op 2 . + CDS 582417 - 583844 1028 ## COG4690 Dipeptidase + Term 583875 - 583928 9.5 - Term 583863 - 583916 13.3 550 319 Op 1 . - CDS 583944 - 585077 616 ## Lbuc_1634 hypothetical protein - Prom 585149 - 585208 4.7 - Term 585172 - 585212 8.3 551 319 Op 2 . - CDS 585226 - 587460 1606 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 587539 - 587598 7.3 + Prom 587805 - 587864 3.9 552 320 Tu 1 . + CDS 587890 - 588105 188 ## Lbuc_1632 hypothetical protein + Term 588123 - 588167 -0.6 + Prom 588110 - 588169 7.0 553 321 Op 1 25/0.000 + CDS 588277 - 588543 326 ## COG1925 Phosphotransferase system, HPr-related proteins 554 321 Op 2 . + CDS 588548 - 590269 1328 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) + Term 590292 - 590342 10.1 + Prom 590424 - 590483 4.7 555 322 Op 1 25/0.000 + CDS 590524 - 591711 965 ## COG0438 Glycosyltransferase 556 322 Op 2 4/0.037 + CDS 591732 - 592754 898 ## COG0438 Glycosyltransferase 557 322 Op 3 . + CDS 592757 - 593797 662 ## COG0392 Predicted integral membrane protein + Prom 593880 - 593939 3.3 558 323 Tu 1 . + CDS 593979 - 596039 1426 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily + Term 596172 - 596215 8.5 Predicted protein(s) >gi|238617815|gb|GG669606.1| GENE 1 85 - 1386 1134 433 aa, chain + ## HITS:1 COG:DR0656 KEGG:ns NR:ns ## COG: DR0656 COG1301 # Protein_GI_number: 15805683 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Deinococcus radiodurans # 8 423 3 418 431 403 53.0 1e-112 MKRYKSYRLTLGWQILIGLVLGIVFGIIFYKNQVAITTMQNIGTMFISLIQMIVLPIVVS CLTVGIASIGDIKKLGRVGLKTLIYFELMTTVAIALGMIVANVLHPGTMIDIHSLHGSDI SQYMATAKSAKHTGLWDTLLGIIPTNIFSSLASGNMMPVIFFSVFFGLGIAAIGEKGKIL IDFLQAVQEVMFKVTNWVMHAAPVGVCALIGVALAEMGISALIPLGYFVIITYLTMIIFV LVVMGIVARLFKFRISDLLRVIKNEIVLAFSTASSEAVLPKMIEKMDKFGTNQGIVSFVI PTGYTFNLDGSAIYQSLAALFLAQAYGIHLSIGQQVTLLVVLMITSKGMAGVPGASFVVL LATISTIGVPMSGLTFIAGIDRIVDMGRTAVNVVGNSLATVVIGKSENEFDEQKSENYIS QFKRPNPKAERLN >gi|238617815|gb|GG669606.1| GENE 2 1587 - 1742 58 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MCHKKILVLVCLGISTLLGIRLTQFLSGFGHLGTDVLVSDRLNAAEKRFTF >gi|238617815|gb|GG669606.1| GENE 3 2233 - 3747 1208 504 aa, chain - ## HITS:1 COG:Cgl0921 KEGG:ns NR:ns ## COG: Cgl0921 COG2132 # Protein_GI_number: 19552171 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Corynebacterium glutamicum # 51 471 59 493 513 276 38.0 6e-74 MADRKVYTDYFFDEPAFNTHDGGYVPLKEPDTPQEKLRIPALLKPDKETDTDMYYTVIAQ TGETQLLPGAKTKTWGYNASILGQTIVFKDGKNIHITLKNELPELTTFHWHGLNVPGPIT DGGCHAPVYPGESTQINFKCNQVAATLWLHAHPCPATAQHVWKGLATTVIVQDQTESQLP FPRNYGVNDIPLVLQDRNFHKNNQLDYMADYDPDGIQGPTPMINGTINPYFDVTTQRLRL RILDGANRREWRLHFSDDLKFTQIASDGGVLPEPVDFTHLMLTCAERAEIIVDFSGYKPG DEVTLYSDDVPLVRFRIHQFAKDDTTLPDHLVNIPDPDVTPNTKIHQVVMAGMDEEVEIN GKKFDMQRIDDKQQVGSVEYWDVSNTNDKTGGMIHPYHMHATQFRIVSRNGHEPYPNEHG LKDTVGVNPGETVRLKVWFDKLGVFMNHCHILEHEDGGMMAQFEVYDPDHPKTYKLMDMD TLMTAFAKERGVKKEDLNIPGMHM >gi|238617815|gb|GG669606.1| GENE 4 3968 - 4195 243 75 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2173 NR:ns ## KEGG: Lbuc_2173 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 2 75 41 114 114 105 68.0 5e-22 MYKVDYYLADINHFIFENRSFTPEELRDELYKECGGDLKHVISVINPEYYDNGNLISGTW EEWYQDKFNKVPVRD >gi|238617815|gb|GG669606.1| GENE 5 4285 - 4533 348 82 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2172 NR:ns ## KEGG: Lbuc_2172 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 20 82 18 81 81 85 68.0 5e-16 MAKEKSNHSKETKAEPKLRFKTKTNLDVHQMLINKSVLSIKVPTIVARKQAQGLLDKAID DGVTPYYLKKETLDRLRGTHYE >gi|238617815|gb|GG669606.1| GENE 6 4745 - 5296 481 183 aa, chain + ## HITS:1 COG:SA0826 KEGG:ns NR:ns ## COG: SA0826 COG0681 # Protein_GI_number: 15926554 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Staphylococcus aureus N315 # 1 160 14 170 191 94 35.0 1e-19 MGLLIGFAVRQYFVSASFIKGTSMQPNLQNAEVVGVFKTLPIRRNAVIIFNAHGEDPEAK ASTDYYVKRVIGLPGDTVSSNNGTIYVNNQPLNQSYISQYQRSTGTGNWNLQSLSTHWTK DQNSVKVPRNKYFVLGDHRSVSNDSRYWGFVDKDKVLGVVKTVPFDKNAGKVNHSTDSLA GSN >gi|238617815|gb|GG669606.1| GENE 7 5468 - 6685 692 405 aa, chain - ## HITS:1 COG:STM0527 KEGG:ns NR:ns ## COG: STM0527 COG0624 # Protein_GI_number: 16763907 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Salmonella typhimurium LT2 # 24 405 26 409 411 253 37.0 7e-67 MPIKTDQLNNRLTTINQFSKNEVGQNRLVYSPNWVKGQKQLISWGNQAEMTITVDTYGTV YLDVIGSQSPDTIIATGSHMDTVAHGGPYDGLYGVVGGLQAILNLVRTFGQPKKTLRLIS FSEEEGSRFPATFSGSKHYARIQNVTGIKDQSGIAFDTARQKAVSKLKEAADEMGLPNIP STFTELHIEQGPRLIESHCQIGLVTSIVGQRRFTVTVNGIANHAGTTPMTDRHDALQIAI VLISHLKAIAAEISPQLTFTVGECHVWPNTSNVIPGKVIFSIDTRHVSDTTLNLFENRLR DEAQKASNSPVSITVNRWVADHPTQLDNGMLTRNKQLAKNLGISYQTLASGAGHDSEIMS KVTKTTMIFVPSIDGISHAPQENTSDTDLHTGVKLLQESLREQAY >gi|238617815|gb|GG669606.1| GENE 8 6697 - 7482 993 261 aa, chain - ## HITS:1 COG:FN1754 KEGG:ns NR:ns ## COG: FN1754 COG2022 # Protein_GI_number: 19705075 # Func_class: H Coenzyme transport and metabolism # Function: Uncharacterized enzyme of thiazole biosynthesis # Organism: Fusobacterium nucleatum # 8 256 2 251 257 329 68.0 3e-90 MSASIQDKDELVIGGHKFTSRFILGSGKYSYDLIDSAINNAKAQIITMALRRNTTGSENI LNFIPENITILPNTSGSTTAEEAIRTARIARELSGSNFIKVEVVPDKKYLMPDNYETLKA TEVLAKEGFIVMPYILPDLNAARQLVDAGAATIMPLAAPIGTNKGLSTKDLIQILVDEID VPVIVDAGIGRPSQAAEAMEMGVSAVMANTSMATAGNIPLMAEAFKLAIEAGRKAYLAKP GRVIEHGAVASSPLAGVSTAK >gi|238617815|gb|GG669606.1| GENE 9 7497 - 8141 739 214 aa, chain - ## HITS:1 COG:Cj1046c KEGG:ns NR:ns ## COG: Cj1046c COG0476 # Protein_GI_number: 15792373 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Campylobacter jejuni # 11 208 63 263 267 179 45.0 4e-45 MEAEVQGQRYKDVYDGMKERNVKDSTDKLAAAHVTIAGSGGLGSNIAIALTRIGVGHLKL IDFDFVELSNLNRQQFKLSQVDMPKVVAMKQNLQEFNPFIDIQTAQVKVTHDNVKDLFES ADIICEAFDNPAAKAMLLDAASEFYPDKPLVMGTGMAGIHSSNTITTKHPRPNLYIAGDG TTKGAEGLMAPRVMICAGHEANMITRLILGQTEI >gi|238617815|gb|GG669606.1| GENE 10 8158 - 8352 273 64 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2167 NR:ns ## KEGG: Lbuc_2167 # Name: not_defined # Def: thiamine biosynthesis protein ThiS # Organism: L.buchneri # Pathway: not_defined # 1 64 1 65 65 75 66.0 5e-13 MVTVNGQEEDVAGQTVIDFLKKRNAPIENIVVERNGDIVHRAQFDKIKLESGDKVELISF VGGG >gi|238617815|gb|GG669606.1| GENE 11 8972 - 9604 751 210 aa, chain + ## HITS:1 COG:SP0725 KEGG:ns NR:ns ## COG: SP0725 COG0352 # Protein_GI_number: 15900622 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Streptococcus pneumoniae TIGR4 # 8 209 8 209 210 182 49.0 4e-46 MKVTNRPLYLVTDHTNLNDEDFLQQIDLACESGVSLLQLREKNRSSRDIYEWAVKVKDIA DRHRVPLMIDDRLDIAQAVDAAGVHLGQSDLPVEIARRILGNKKIIGATTKTLKQAKLAE EQGADYLGVGAIFPTQTHVKTVHTSIETLGKIKEAVNIPVYAIGGLKAHNIQAIEPAHVD GVAVVSAIMQAKNAKAATRELLDAVEDAIG >gi|238617815|gb|GG669606.1| GENE 12 9729 - 11162 1441 477 aa, chain - ## HITS:1 COG:L0046 KEGG:ns NR:ns ## COG: L0046 COG0362 # Protein_GI_number: 15672604 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Lactococcus lactis # 5 476 3 471 472 655 67.0 0 MSDQKANIGVVGMAVMGKNLALNIESRGYTVGIFNRTGAKTEAVIKDHGDKKLLPSYSVE DFVKSLETPRRIILMVKAGKPTDAVIDELLPLLDKGDVLIDGGNTNFHDTMARNARLDKS GINFIGMGVSGGELGALQGPSLMPGGQKEAYDLVEPILKQIAAKAPADGEPCVTYIGPNG AGHYVKMVHNGIEYGDEELIDESYNILRNLAGYSVDDLAGIFKEWNKGELDSYLIEITTD ILTHKDDIGDDKTKPIVDMILDRGANKGTGKWSSQDALEVGVDQSVITEAVYARFISMIK KERVAASKVLPKPKGDVDFDKKEIVEKVREALYFGKVMSYAQGFAQLKAASDSYKWNIKL GEMAKIWRAGCIIRARFLQNITDAYDKNPDLQNLLLDPYFIDIAKKYQESARDVVALATK AGVPVPSLAAAVSYYDSYRSEVVPANLLQAQRDYFGAHTYERVDRPGSFHYTWYKEQ >gi|238617815|gb|GG669606.1| GENE 13 11505 - 12956 1186 483 aa, chain - ## HITS:1 COG:lin2085 KEGG:ns NR:ns ## COG: lin2085 COG0364 # Protein_GI_number: 16801151 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Listeria innocua # 2 477 13 487 491 528 55.0 1e-150 MLFGANGDLAVRKLYPAMFKLFEKGNIRDHFAVIGSSRYKVDDAKYRDMVTKSVEKESSN KKMIADFASHFYFVTHDVTDLSHYSVLKDKADELDKKYKLEGNRVFYISMAPNFFGTVAK NIKTQGLLSNNSGFNRLVIEKPFGRDFESAKELNDELSNAFEEDQIFRIDHYLGKEMIQN IEAIRFGNTIFEALWNNRYIDNVQVTLAEKLGVEERAGYYDNSGALRDMVQNHIMQIVSL LAMEQPVAFKDTDIRAEKVKALRSLRVYNVAEASTNFVRGQYGAVGESKAYRDEDGVPKD SNTETFVAGKLLFDNYRWSGTPFYIRTGKKLADKFTRVDVVFKKPLVDIFSFPQSGKALL NANVLTIYIEPTQGFSLVVNAKNSEQGFHTEPVNLEFLEDSKRTKETPQPYERLIHDVLK GDGTNFASWPEVASAWKFVDQIRRVWDIQQPMFPNYIPGSMGPVSADELLARDHREWIYK LNQ >gi|238617815|gb|GG669606.1| GENE 14 13346 - 14110 734 254 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2155 NR:ns ## KEGG: Lbuc_2155 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 251 1 241 242 255 70.0 1e-66 MKKIKFIAFIAVLASFFLGVSLKASASSPSLSVNNVYTTSSSVTGTATKGVSIIVRNSNK NTIATSTADNQTGKFSADLHTNLKANQKLYVYARKSSTSYFYRIVTVKTPQTTTTTTSSS NTSSSSSSKATASTSASSKLTINEPTGKWYSGNNNGYRVVTTFNQSTGLNQALYKNGKFQ KKLINYANYKVTTYSKSFWKITYRERGSKTTQTFYLRFTDNTHFIIVNKANKGLKVKYGN APYHYYKFVLVNNK >gi|238617815|gb|GG669606.1| GENE 15 14263 - 15483 1076 406 aa, chain + ## HITS:1 COG:BS_yttB KEGG:ns NR:ns ## COG: BS_yttB COG0477 # Protein_GI_number: 16080087 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 36 369 18 354 397 209 35.0 9e-54 MGEEIFISTEGRDNVPKRSEIRFSSVILYSLILNAGAAFMWPLVTVYMHNYLHKSLTLAG MTILVMSVFMMIGNYLGGYLFDRWSPYKAAIISVVISMSAIIGLVFFHGWPMFSILLLFV GFGDGACMTLLNSYAASIKTRSTRAIFNVLYIGQNVGIVIGTLMVGFLLSHGVTTVFIVA AIFYFILLVITLIDFNVVVQRRAPGKKIQPGAPHETNVGSMILAICGVVLGVYLSYALWE SVISVHMTNLHIPFENYSLLWTLNGLMIVFGQPFVNRIGEHFKLSTQTYIGVFIFAISFI GLIFAKQYYAFIIVMVVTTIGEMIGFPGIPAWIDSLSTPQQRGKFQGMYNLFMSFGRALG PLIGGVFLDFAPYGVLFSFAAGIIIVFLVILMILNHRRNRINQQFN >gi|238617815|gb|GG669606.1| GENE 16 15551 - 16000 429 149 aa, chain - ## HITS:1 COG:SP0158 KEGG:ns NR:ns ## COG: SP0158 COG1780 # Protein_GI_number: 15900096 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Streptococcus pneumoniae TIGR4 # 1 147 1 147 156 143 44.0 1e-34 MTPIKILFISIEGNTRSFIKDLTKYAVGMHDQDSSNPLVISKEISDQSDFEDESDPFFAF VPTYLDGGNGIDNGVKELMTNTLGEYIAYGKNASLCHGIVGSGNKNFNEQYCLTAKRYAS QFNVPFLADYELRGTGRDVERIYKLLAKG >gi|238617815|gb|GG669606.1| GENE 17 16071 - 19199 1625 1042 aa, chain - ## HITS:1 COG:SA1085 KEGG:ns NR:ns ## COG: SA1085 COG4485 # Protein_GI_number: 15926825 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 41 684 47 645 868 62 22.0 3e-09 MTKLWRKTPAWLTYSVLFTVLTGIIAGSLLMTGRSMVWELDGFAQHYPILVQLRHMIATF LSDPSRGFTHWSWGISLGSDQLTNLSYYVIGDLFNYLVILFPKNHIEIAFEFLIFLRMYA SGLSFMLYTSTYKFKKISRVIGALAYAFNGYALSTGLHHPFFILPLIFFPLLCYGIDRII LNKSWIPLALAVFLTLFANFYFAWILAIGTFIYLIIRVLSRRKAADFHFLKSLGKMAISV ILGLGMSAIVFLPTALFATKSTRIHQAFANGMVLFPPEYYLKMPSAILPTGRAMNFWLVI GITSLSFLGVVYTLRHFKKYFWQNVGLIIALIGILIPAFGAIMNAISTPSNRWFLLANII FGLATMALIDNLDQLTKNDIAWLTASGIVLVILVWATNGFILNLKAHDAISYGYLFLTVI ALLVIFTFKWKPWVKVSLILCLFMLNIASNIIGIYSPNASNLAIQQLNRGLATRFSKDYY NGAQQYIKKQPGFFRTSMAPRYHYNEHLQNLANYTNTNTDLSINSGINNTSVYLTLQNGY LGKFSRSVGNSQFSMNTPIAQGDYRTAFNNLIGVQYIFAKANTKKPPMVPYGYHIIKNAN GQPKVFQAQARVNAVPAIENMDGTVIYKTNNALPLAYTQFRTFSTNAYNHLDPVNRERVM TQGAVVSPKNNNSPLTYQSASKNLKYQVQVDRSSFIDSGKKLTAYRLGILGDKDQKQVIE QPHAQVSLGANLQKTKDLLATNRMIYENNQYENRNGLRKMTTDVTGKPLQYSLKVNKPKQ TKNAELYLVLTGINQTDGSIADHNNWAANTFLLQNKLYSRLGKLNVARHSLLTPTFGGYN FDAFTNVFHNGYAQYDNDNLSNYRQIDNMVLNLGYSTKSRKQIKLDFNLVKNIKFKSVKL IAMPFNKSYDNQIQKLKRTGLNHLKVSDNQVTGQSHNGSNGTLVTSIPYSSGWKLQIDGK PTNTFVVNKGFIGATLPAGNHQIKLVYTTPGLQISKWISIISWLIMILAMLSVGFRLVLP KKKNRAAHAVNKQPSTGQKPLD >gi|238617815|gb|GG669606.1| GENE 18 19315 - 20721 1199 468 aa, chain - ## HITS:1 COG:L84992 KEGG:ns NR:ns ## COG: L84992 COG1253 # Protein_GI_number: 15673816 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 11 451 1 429 430 241 32.0 2e-63 MRNRILGDSQLMTNLLIIIVTFFFAAFFVASEFALVQSRVSALEERKKNLKDQKITKGKK ITKLNREIHMVTNLNEYLSTTQVGVSLAGIILGYIGESFVVTILVDVMEIHNSPINPATA HAIGAVLGIIILTYLEVVLTEIVPKNISIDMPMRVLNFVSTPLHYFHIIFYPFVWLLNVS ANGIVKMLGLPFANENAESFSQAEILSLSKNAVKSGALEQNDYLYMRRAFQLNDKVAKDI MIDRTQLVVIDITTNVKQAIQVYLQKKFSRIPVVANNDKDKILGYVYNYDLIRQSQVDSS IRIDRLLRDISTTPEMTPITDVLHQMIEKRTPIVVVVDEYGGTSGIITDKDIYEELFGTV RDEIDPSFTEYVFKQPNGTYQVSGKLTTHDFERYFDADFPEFTSSDAVTLAGYFQDNYPD VKVGDEISFENFDFKIVDLENSFINWFEVTKHKPITPTKDDDNDGKSD >gi|238617815|gb|GG669606.1| GENE 19 20932 - 21291 463 119 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2149 NR:ns ## KEGG: Lbuc_2149 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 118 1 119 121 114 67.0 9e-25 MAQKAKESAKEKKADEEEKPEKDFNYPDNEIKKAVDLIKQKGYVTKLDFKEMDDDDWAKG FSKEVDKVFQKSDEDPYIYYEKFDFVGGDIDSIIWNMDVIKTRDAALQKLADLLKERIE >gi|238617815|gb|GG669606.1| GENE 20 21522 - 22379 748 285 aa, chain - ## HITS:1 COG:lin0819 KEGG:ns NR:ns ## COG: lin0819 COG0656 # Protein_GI_number: 16799893 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Listeria innocua # 6 271 4 270 274 249 47.0 4e-66 MFEPDKSTYQLNDGNQMPVLGFGTYKIAKPDLMNQTIQSAYENGYRMFDTAQYYRNEKML GDAIRNLSVPRQDVFIIDKVTEMNQGHDLTINSTDFSLQQLGTDYVDLLLVHWPIADKFF ETWEAFEELKKQGKARSIGVSNFTRSQLELLKTQADEMPVVNQIETHPYLNQAPLIKFDK KQSIVTQAWSPLGRGAVLDNPMIGKMAVHHGKTPAQIILRWDIQRGISVIPKSQNPERIA QNADLNFELSDDEMSMLDVMNRNQRTGNEPELVYELGKQYKQFKK >gi|238617815|gb|GG669606.1| GENE 21 22600 - 24987 1696 795 aa, chain + ## HITS:1 COG:L168650 KEGG:ns NR:ns ## COG: L168650 COG0474 # Protein_GI_number: 15672557 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 13 743 4 741 775 496 38.0 1e-140 MADVKISEVTPEQGLSSAQVEHQVKSGYKNLGEQSLTRSVKEILRDNTFTLFNLINVVLG ALVFYTGSYKNLLFLGIAFFNTIIGIIQEIRSKRQVDKMVLLAEGKSTVIRNGEPVDIYP EDIVLGDVLALNRGDQIPVDGVVMQSRGMEVDESPITGESQTISKAVNGKLTSGTYLVGG SGKMLVTKVGAQTFVNHMSNEAKEGKDTSSILLNTINRIIKVLTYVIIPLGLILFIAKLF GGNDINRAILGTVAAMIGMIPEGLVLLTSMTLAVSAMHLARKKTLVRDLPAIETLARVDV ICLDKTGTITSGDLKFEKAIPLMTGIETAELEKIVAGITYGTGDTNETANAIKNAIEDPN MAASTIVPFSSQRKWSGVEFTNGREYVFGAPQFIFHQLDADTKNQIQEYAKKGFRVLAVA KVDLLDAEKPLGNPRMIGLILISDVIRPNAVNTFQYFRNQDVTIKVISGDDPTTVSTIAK NAGIQNAGHSIDMSTVSDNDDFGQLVTENTVFGRVTPDQKKRLISALQEKKHTVAMTGDG VNDLLALRQADCGIAMASGSESTKSIADFVLINSNFDAMIDVLNEGRRVINNIERVASMY LIKTMYSVALSLIFVFLAMQYPFEPIQLTPITSLMVGIPSFFLALEPNFSRITNQFMRQV LIVSAPAAVCVVGYIMVIEIVGRFFGLHYEFTSTLCVLLTGAICWLALVLVSRPWNRLKF GMDILVLAAFLAIIVFFNDVFSLVSFFNKDIWLYAVPLIATAYPLYIFMQGVIAKVLDRR EVRKRERAANKQNYK >gi|238617815|gb|GG669606.1| GENE 22 25110 - 25646 564 178 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2144 NR:ns ## KEGG: Lbuc_2144 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 5 178 4 175 175 272 85.0 4e-72 MPSINEEYDLYEKWEDKLKTVELPLWAELPKFELYMDQVTALVNETLGPIGVDSVTPAMI NNYVKHKAIMAPVKKKYQTMQIADVILISLLKPAFSLETIRHGIDQVTANIYPQQAYDNF IKRLMFSFKNMSNRNGQALEEKNLNDKLMQVAVNVIIDRLQSETLLKIIEKPLTKISK >gi|238617815|gb|GG669606.1| GENE 23 25874 - 28492 2317 872 aa, chain + ## HITS:1 COG:SA0143_1 KEGG:ns NR:ns ## COG: SA0143_1 COG1012 # Protein_GI_number: 15925852 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Staphylococcus aureus N315 # 12 460 3 458 458 515 59.0 1e-145 MIENKVKELKTTKPEKTNVDDMINKLVSKAQKALEIMDSFDQEKVDHITHEMVMAGQDKH MDLALMAAEETGRGVAEDKAIKNMYATEEIWHSIRDHKTVGVIKDDRERQLITVAEPLGV LAGITPVTNPTSTTLFKSIIAMKTRNPIIFSFHPQAMKSSVAAAKTVRDAAIAAGAPEGA IQWIEEPSIEATNKLINNPGVASTLATGGPGMVKAAYSTGKPALGVGPGNGPVYIERTAN ILRAVNDIVLSKTFDNGMICATENSAIIDNEIYDDVKENFIKNGVFFVTKKDQPKLAEAM FDPKRGGVRGPIAGKSAKGIAKLAGIKVPDNTKVLAAEMTGIGPKYPLSGEKLSPVISVY KAKSHEDAFSIAEQLLNYGGLGHTAAIQTTDDDIALKFGIKMKAARVLVNTPGGFGGIGN LYNEMTPSLTLGTGSWGANSISHNVTDYDLLNIKTIAKRRNNMQWVKLPRVYFEKTSIRY LDDMPGINKVFIVTTPGMVEHGYVDTVLDELKRRPNEIEYSLFSDVEPDPTTDTVEKGVA QMRSFKPDTIIALGGGSPLDAAKNMWLFYEDPTTSFFGAKQKFIDIRKRAYRFNKPRKAQ MIAIPTTSGTGSEVTPFAVITDSKTHVKYPLADYALTPDVAIVDPQFVQTVPKGTVAASG LDTLCHGIESFVSVMASDYTRPLSLQAIKLVFENLTNSYNGDEHAREEMHNAATLAGMAF GNAFLGITHSVAHKLGGEFGLTHGIAIAITLPHVIRFNAKLPEKIAVWPKYEYFRANKDY AEIARYVGIQGKTDEDLVEGLVQKIIDLAHSVGVTLSLKAWGVDKDKFDAAVDRLSVLAY EDQCTTANPKEPLIADLKQIMMDDYDGKGVEK >gi|238617815|gb|GG669606.1| GENE 24 28780 - 29421 660 213 aa, chain + ## HITS:1 COG:BH2835 KEGG:ns NR:ns ## COG: BH2835 COG1418 # Protein_GI_number: 15615398 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus halodurans # 5 211 7 213 215 164 44.0 1e-40 MIRELRRIQEFVREELGYETSGHDYTHITRVVSLARTILKGEQADEQLVLVAAYLHDVSD DKVTTNPKAKREAMINKLREIGYDQIFIDKVFDIIDNMSFSANLKTKHKLSIEGQIVQDA DRLDAIGAIGIARTFYFGGHFGEVMYNPHIMPRTGMDKSEYRKRSTVINHFYEKLLNLKD QMNTPTAKKLAEHRQQVMLDFLHEFMDEWNGQA >gi|238617815|gb|GG669606.1| GENE 25 29418 - 30146 393 242 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2138 NR:ns ## KEGG: Lbuc_2138 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 242 1 244 244 223 57.0 4e-57 MLKTIMINIATVLGFLIGVPFLFIFLLAMINRNTKAVIAKRFGINGQLIFGFLGVIIHEA SHLIVALVFGHKIKTVRLIRRPTIDNPSLGYVNHTWQPRNLYQTIGNLFIGVAPIFGCCT TILFLARWLLPNIYNRLVTLTYQPLSITAVPAFQWGPMLLFILLTANICIGGFDLSSSDY RNSIQGLATTILLLISLTIVLSLIPIGTTVFAALYQAIKVITVISTFNLLISAVLNLVFK LI >gi|238617815|gb|GG669606.1| GENE 26 30151 - 30654 453 167 aa, chain - ## HITS:1 COG:SPy0599 KEGG:ns NR:ns ## COG: SPy0599 COG2606 # Protein_GI_number: 15674682 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 14 167 12 158 159 146 51.0 2e-35 MSKKKRNKVHKTLVEQILDKNKIPFEQMTFPTHQEGDVEQISVDHLDQDEHQIFKTLVLT GKTTGPVVGVVPVDEHLDEKKLAKASGNKKVTMVPLKELLKTTGYQHGANTPIGIWEKFK YPIYIDQEAQKMGEIIVSSGQIGRSVKVDAEQMRQLVHGSFADLKEK >gi|238617815|gb|GG669606.1| GENE 27 30777 - 31508 613 243 aa, chain + ## HITS:1 COG:SP2020 KEGG:ns NR:ns ## COG: SP2020 COG2188 # Protein_GI_number: 15901841 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 6 236 5 236 242 124 30.0 1e-28 MADLVYQNIMKDLKNRIKKNEFDSKRLPDERSLSESYGVSRSSVKRALNVLANQGIIFKK RGSGTFINPLYQKNRSIFQYEGSNLGVTDSFKSDGKIPKIKLLDFNVIPADKELQTELFL DPGDFVYEIKRLRTFEDKPFMIELGYIPIKVVPDLNQERVEGSIFNYFEDTTGKSVTKSF MTITTEPSNKGDQKLLNLKPVEPVGVMEGIFFLDDGTPFEVSNMRLHYKYLNYNTFVDLN ENR >gi|238617815|gb|GG669606.1| GENE 28 31896 - 34286 1645 796 aa, chain + ## HITS:1 COG:CAC1343 KEGG:ns NR:ns ## COG: CAC1343 COG3957 # Protein_GI_number: 15894622 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoketolase # Organism: Clostridium acetobutylicum # 7 791 15 794 796 988 60.0 0 MTVDYDSKEYLDLLDKYWRAANYLSVGQLYLRDNPLLKRPLKSDDVKIKPIGHWGTIVSQ NFIYAQLNRAINKYDLNMFYIEGSGHGGQVMVSNSYLDGSYSDIYPNISQDENGMKKLFK QFSFPGGVASHAAPETPGSIHEGGELGYSLSHGTGAILDNPDVIAAVEIGDGESETGPLA ASWFSDKFINPITDGAVLPIINMNGFKISNPTILSRMSDADLTDYFKGMGWEAHFVEATA DTDHAKVEVEFAKTLDTVIEKIKSIQKNARENETPDNVKLPVWPMIIFRSPKGWTGPKKD LDGNPIEGSFRAHQVPIPVDANDMEHADELVDWLKSYKPEELFDENGTLKPELRALAPKG EQRMSVNPITNGGIKPEPLKLPNVRDFEVKFDKRGTEQKQDMIEWSKWLDAVAKLNPTTF RGFGPDETKSNRLYSLLDDGKRQWMEDIHEPYDEDLANHGRVIDSQLSEHQAEGWLEGYV LTGRHGFFATYESFGRVVDSMLTQHFKWLRKASEQYWRKQYPSLNFVDTSTVFQQDHNGY THQDPGLLTHLAEKKPEFIREYLPADANELLAVGDSAFRTYEKINLIVTSKHPRRQWYSM DEAQDLVKNGLGYIDWASTDQGQEPDVVFAAAGSEPNLEALAAISILNKEFPELKIRFIN VVDILKLNSPKKDPRGLSDEDFDNLFTTDKPVIFAWHGFEDMIKDIFFDRHNHNLYVHGY RENGDITTPFDMRVLNELDRFHLAADAIRHIPAYAVKGGYFIQRMNNIVDKHNRYIREVG TDLPEVTSWNWEPLNK >gi|238617815|gb|GG669606.1| GENE 29 34378 - 35844 1049 488 aa, chain - ## HITS:1 COG:L169390 KEGG:ns NR:ns ## COG: L169390 COG0154 # Protein_GI_number: 15672148 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Lactococcus lactis # 5 486 1 494 499 338 42.0 1e-92 MVNNLLATNSATQLTNLIHNHQISRADLLQQLLDTIEEQNPRLNAVTHLWPERARQMVTH FKDDGQPFAGIPILLKGLGQSFKGEIDSGSSQLLRDYIAPETNNFVKGLLSAGLIPVGET NAPEFGFKNITDSKLYGNAHNPWNTDYQPGGSSGGSAAAVGDGWLPIAAGNDGGGSIRIP SSFSGTIGLKPTRGRVPTGPDEWRGWQGASINFAITKDIQDTAKLLDALSVVQMSAPFQV PLPEHDFESTLNDLPKNLKIAFSTKSPVNTPISNEAKRAVSNAVDFLEKAGYDIIEADAP IDGIQLMQTYYTMNAGETATMFANMDLDSQTIHDNVEPLTWALNVAGESVSAVAYSQALA FWDQVAATMDTFSDQYDLYLTPTTAFQAPQVDQQLVSDQNMEKLINIREFEPNERLQIIW DQWLPALTISPFTQLANISGQPAISLPTYVGNNGLPLGIQFMAKKGREDLLLQIGRLFEK AGTFKLKH >gi|238617815|gb|GG669606.1| GENE 30 35938 - 36846 464 302 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family [Lactobacillus jensenii 269-3] # 29 288 26 279 287 183 42 1e-44 MNTQWLFKTTVPQTMDGKPLRYLLHHYWLLPKHLVFSLRSDERILVNNRYLPVNFPVHFH DHISLTFIPSDFQHPFPQVLPDSAATLKILYEDANLIVINKRRGNKTHPNQPGEVGATIN HLAAYLKTKGMLPYMVHRLDQETSGAILFAKNPAVVPTLVAKIAAKNIKRTYLAWVVGTD IDSQGIIDFPIGLDPNDKRKRMIDGSHPAKSLTHYTVLQKEDGYSLLAVQLETGRTHQIR VHLAAIGHPLVGDPLYNPDDKHPFLLLHSWKLKIPLPFSEQVIEITAPLPAHFDDFKLSL LT >gi|238617815|gb|GG669606.1| GENE 31 36939 - 37409 428 156 aa, chain - ## HITS:1 COG:SA1532 KEGG:ns NR:ns ## COG: SA1532 COG0589 # Protein_GI_number: 15927287 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Staphylococcus aureus N315 # 6 156 4 154 166 111 42.0 4e-25 MEDQNYKNVLVPVDGSAVTSSVLNRAIAVALANDAHLDILNILEVNQFNQTYGSAVSGDV VFKLTENTEDKLKEMKQKALAAGVKDVDIHIRFGNPKPIISREFPHDHHTDVIVIGSTGL SAVERLIIGSVTSYVTRTALCDVLIVRSKNDPKQPK >gi|238617815|gb|GG669606.1| GENE 32 37582 - 38592 982 336 aa, chain + ## HITS:1 COG:BS_yhfJ KEGG:ns NR:ns ## COG: BS_yhfJ COG0095 # Protein_GI_number: 16078089 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Bacillus subtilis # 9 336 10 331 331 311 48.0 1e-84 MYYYVMKSNDIRRNLATEQYLMNEINFDEPLLLFYIEGPCIIVGRNQNTLEEINKKYVDE HGIVVTRRLSGGGAVYQDLGNLCFSFVVDSDSEEFGDFKSFVQPVVDALHDMGATSAEVS GRNDILVDGKKFSGNAMYTKGGKTFSHGTLMLDVDLSVIPNALTVPEDKIKSKGIKSVRS RVTNLKPYLAPEYQNLTTPEFRDRLLKELFHVEDLNQIKDKEYHLTDEDKKGIDKIFDDV YNNWNWVYGNSPEFTVKKRQHFTNGTIDARFQVDDGKISNVTFFGDFFGPRDTNELADKL KGVRFERADVSNALKDVDLNQYFTGIPEEDFLDMLF >gi|238617815|gb|GG669606.1| GENE 33 38778 - 39125 355 115 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2128 NR:ns ## KEGG: Lbuc_2128 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 115 31 145 145 105 55.0 8e-22 MRLDRRVLLSEAVRVTIIAGVFYLATILLAYLKVKISYYLMAVVVAIYTVGFVGMLATMF TGSSANIIVKLVMAALSAFGIIVNFYWFILAFKLRAIFQRESLEKRLNQNKQLKK >gi|238617815|gb|GG669606.1| GENE 34 39136 - 39672 511 178 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2127 NR:ns ## KEGG: Lbuc_2127 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 156 4 159 159 162 57.0 7e-39 MNRDVTSFIADVTDEKVEHKTVNIKLADLVAKPDETMAPIYEFVEEQLNLGKLGYGEVQV DDADVNIRLETNLINLPLQDIKRIDKMISDEDTLPVNVYLVMSSPYVNVSSLRIDEVASA DEFIEDMDHYLPMMNTWLADHLAAVQENMKTQAEKEADEKKEKAKKPAAKARKTAQKK >gi|238617815|gb|GG669606.1| GENE 35 39912 - 40871 917 319 aa, chain - ## HITS:1 COG:lin0622 KEGG:ns NR:ns ## COG: lin0622 COG0604 # Protein_GI_number: 16799697 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Listeria innocua # 7 319 1 312 313 241 42.0 1e-63 MTNTEKMDAIVINAYGDENQLTEQQIDIPSIKNNDLLVKVQSIGVNPIDWKTRMGLRQSR YPFDFPIVLGQEMAGTVVKVGKEVSGFKVNDEVIGYGTPSNRGTYAQYYAINADQTAHKP ENLSFEEAAGLGLAGTTAWEAIFDAGQLKADQTVLILAGSGGVGLMAIQLAKNAGAHVVT TTSSKNADYVKSLGADEVIDYNKDDFSTRLSNIDLVFDTLGGDNQKAAFKVVRPGGRLIS IVETTDQAKALGNQYGVYFDKINAHPDKKIMAKLADMFGSGKLVVRVAENLPFTVENVRK MHLESESGHVVGKLVLNIN >gi|238617815|gb|GG669606.1| GENE 36 41022 - 41387 340 121 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2125 NR:ns ## KEGG: Lbuc_2125 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 117 1 117 118 158 71.0 7e-38 MKLTITDRASDKLNKKVPHDSRLLLSFDDGVGPFSKVGVCSLDTSFDIIAVDNEAKTPDY EAVLHTNQGDWRFKGYSNIYLDNDMKLDVKNNQLVLSGESGILDGSVAIKDLTKQNVAFK N >gi|238617815|gb|GG669606.1| GENE 37 41443 - 41631 86 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509505|ref|ZP_03939554.1| ## NR: gi|227509505|ref|ZP_03939554.1| hypothetical protein HMPREF0496_1668 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1668 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 62 1 62 62 115 100.0 9e-25 MSILPADKRAGRITVEFQKPCDLVVYCGSRNVLVISLSIQKRLSSTYFLVTVMMAEKELE QG >gi|238617815|gb|GG669606.1| GENE 38 41721 - 43046 840 441 aa, chain + ## HITS:1 COG:SPy1236 KEGG:ns NR:ns ## COG: SPy1236 COG0642 # Protein_GI_number: 15675197 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Streptococcus pyogenes M1 GAS # 88 437 99 436 436 211 35.0 3e-54 MVQNATKKQWVKFFINELVSFTALFAILGGIIYLSFKDSIDKNINSGLYGQKTEILRSQR KSSTGGDSIHPYRARSTPPPTNNATFRTNALIFSSSGRIENAGMIGQGAFSAFQGIKLVK KNINKVKGLVITTQFGTKQSNHYFMTLLIKVPHTNTNTTYSGKYVLILQNIDADLLAVES FKRSLFITLLIFWALAIAIAYVLSRLSMRPILISWKKQREFSADAAHELRTPITVIQNQM EYLLTKPKKRILDEASSISTTLDEVGQMQTLIKRLLMLSRGDANIIQIQRQSVDLKEWSR RIFNIYQPLAESRHKTLRSDVLVSGEVVFDPDLMRQALVIILDNALKYTPEGGVIEVLIK KQHGKLIISVSDTGTGISDKDKTQIFERFYRVDESRNSKTGGNGLGLAIAKFIVQQHHGK IDVRDNHPRGTIFQMMIPILK >gi|238617815|gb|GG669606.1| GENE 39 43139 - 43717 493 192 aa, chain - ## HITS:1 COG:mlr1523 KEGG:ns NR:ns ## COG: mlr1523 COG3548 # Protein_GI_number: 13471525 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Mesorhizobium loti # 1 184 56 239 246 113 34.0 2e-25 MGKGRLEAFTDAIIPIIMTVLVLELQTPRRYSWEGLWEMRQELLTYAISFFLLAIVWGNH HHMFQVVKRINGNVIWANTLLVFFLSFIPFATSIVNDDPNSLFGSQLYTLLFICINLAWN FLRVALLHADKHNDVLVGSLKHEPKSLITLGAFIIVFLLSFVWHEFGMIGTFLVMMIWLM PYKRIENAFHNF >gi|238617815|gb|GG669606.1| GENE 40 43883 - 45295 1180 470 aa, chain + ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 25 466 25 462 463 493 60.0 1e-139 MSLGSRIFQRENLDRYLETDKKFIKTMSALDLISLGIGAVIGTGIFILPGTVAATKAGPG IILSFIFAAVVCSTSAMCYAEFASALPVAGSAYSYGNLVFGEIIGWVLGWALILEYVLAV AAVSSAWGAYFQSFLKGFHINFPTAISGPFNPSAGTYGNVIAIIIVLLISWMLSHGMRSS VRVNNVIVFVKIGIILLFIVVGLFYVKPSNWHPFLPYGWSSSKGGVFGGAAAVFFAYLGF DAVSSSAAEVKNPKKNMPIGIIGTLIVATILYVGVSIVLTGMVSYTKLNVADPVAFALQF VNLNWVAGIISIGALAGMFTMMVTMIYSSSRLIYSIGRDGLLPQFLGKLNKHGNPGNSLL IVTIIIAIMGGFIPLDQLTNLVNIGTLIAFLFVSFGIIPLRRNKEIQNNHGYQVPGYPVF PIVSALLCLYMLTKLPTETWVASGIWFVIGLILYFSYGIRHSKINKDREV >gi|238617815|gb|GG669606.1| GENE 41 45561 - 46748 722 395 aa, chain - ## HITS:1 COG:BS_yttB KEGG:ns NR:ns ## COG: BS_yttB COG0477 # Protein_GI_number: 16080087 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 5 358 4 354 397 207 35.0 3e-53 MKTISLKWLVTGALLSSVGMSFIWPLTSVYLHNRLGVSLTTVGIVLLFNSLASVLGSYIG GYLYDRKNPYHLIVGGVIATTVTLIALIFFHGWPVFGFLLFFNGLASGWNLTIVNSIGTS IKTVDSRYVFNMLYFAQNLGVVIGTSLVGYLYSISVTLLFVVATSLFLFFLLVVSTKYKP AASVQRKKIGDGVKTNWSKQSLPRPNAIVLTTFFISLLIIWTMYQQWVSNLSVYMTTLGI PLRNYSFLWTINAGLIVVIQLFINWLARDHENLIVQILFGVSMIVLSFVMLIFAKSYPFF VISMIILTIGEASTFPTIPALVNALTPVEAKGKYQGLINAWSSAGRALGPLFGGLVIELQ SYTSLFIIATIAILAVWLSIILIWRIFHHQLTFYR >gi|238617815|gb|GG669606.1| GENE 42 46984 - 47409 509 141 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2121 NR:ns ## KEGG: Lbuc_2121 # Name: not_defined # Def: OsmC family protein # Organism: L.buchneri # Pathway: not_defined # 1 141 1 141 141 246 83.0 2e-64 MAVDGSLYHTEIVNEHGLVGQSYVHGNEGLALGVSSSLLNSPGTNPEQFIGFALSTCFNA TIGIVERQHKLEPDSIIHTGVDIVKDTVGYKFIVRCQIFFNKLDNQQGQQMVDEALNQCP VAKLLKANENVTFEVVDKFSF >gi|238617815|gb|GG669606.1| GENE 43 47500 - 48003 338 167 aa, chain - ## HITS:1 COG:lin0412_2 KEGG:ns NR:ns ## COG: lin0412_2 COG0791 # Protein_GI_number: 16799489 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Listeria innocua # 45 163 12 131 132 109 43.0 3e-24 MSHSHRNIKSALKPFLLIVALFSFAVTAFSFAQEANADSTDEPHYSTVYKEAKKHLGTSY VYGAVGPTHFDCSGFTKYVYKKSIGKSLPRTAQAQYNGTKKVSKKNIQKGDLVYFGSSKS SISHVGMYIGNGRMIDSQNRGVVTEQVYAPWWHVVGFSHPTDLSYDD >gi|238617815|gb|GG669606.1| GENE 44 48039 - 48944 653 301 aa, chain - ## HITS:1 COG:L154225 KEGG:ns NR:ns ## COG: L154225 COG3757 # Protein_GI_number: 15673122 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Lactococcus lactis # 32 221 64 268 271 70 27.0 5e-12 MTLNFKKIAGLFMGALAAFTICTSVSASKTKIADVSQYQGNINWSKASKDLKYAIIRVQH GDTGDADFRIDSKRNINASGAKKYGIPFGQYGYAEFSSVADAKKEAKDFYNRSNASARFY VLDNEHRKGKGSEQSYVNAWLSQMRKLTNKPLIYYSYDNYVAVHKINYSKFDGSWIANYS KKPTASADLWQYTSKGRVSGISGNVDLSKAINSSVVDSWFKATSADTAKPTYYTSVPADQ TITTTRHIYEYKDANFQSRITKLASGKSLPVKAITRSNSGAYRFQLTNGNFVTANKAFVS D >gi|238617815|gb|GG669606.1| GENE 45 49367 - 51976 1617 869 aa, chain + ## HITS:1 COG:SPy2211 KEGG:ns NR:ns ## COG: SPy2211 COG4485 # Protein_GI_number: 15675943 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 15 848 12 841 858 149 23.0 3e-35 MLKGTRKHPRMRYDIISILLPIIVVSLLFTIISIAPFGSRNLLISDLSTQYLQFFAELRR QLIHLSFSSYSFLISIGDSLIPVYAYYLLSPLNLIVIFFDPSQLPIAIDLIIWAKIILCS ISMSTFLGHKYQRYDFMAICGGLAYGLCGFVSMYFYDLMWLDSLILLPIMIYGLEKLYKQ NKVWLYVFGLTAIIMTNYYMGYIICIFSMIYFVYLMTKNQPNKMTFTLYLKSQVNKIGRF LWYSVLSGMLAAVVLIPTAISMMSTGKKDIHFRNFILKGTFGPSFTVNLGFGGNDFAGRL FHNPSMFTGSVFIILGIVYFFSKAVSSRDKQASAFLLGSILLGMWLLPLNTIWHLFQRPA GFPFRMVFLFSFALIMVAYEGYLKGIFKETRVVVFSAVALGVAISVGYIWANIFGKRLTQ FEFSTPQLSVNNFIYVLAMGFLILTVVAIVSLTNRKPSSRVVLSGILIFELMMNFFVATM DAPFVNQQQFEKRYQQSEQAIHHVRQLKLTQNKFYRLLIMDQPYRNIYQVPYSGYNDSLL FENHGISSYSSTLNSHTHHVLASLGFSSRNIRRIDMLGGSVITNHLFGIKYYYVIGKHSQ KLLVRKNAAQLGFMTNNQIQHVTYKRDQIFNNLNALVQAEAGNKGRYLYRPTITKYKQAV VRSNYHYEMQLQANTSGPHYIYIPKVRLYHVAIWVNGAKLSNTYSGLGTEMIPIGYLLKG QTATIRVQSTKPLPVVPKIAMGIDLKEFESVVAQSKNHQFELRDARDINKHGGHFRGTVQ VSKRDRTLLMSFPYDKGWKLSVDGKPHKVIKVADGLVGAELSPGKHHLAFNYHIRGLGVG MLISILGMALLAISEWWRKKRVNFVKHLH >gi|238617815|gb|GG669606.1| GENE 46 52196 - 53098 1023 300 aa, chain + ## HITS:1 COG:L53699 KEGG:ns NR:ns ## COG: L53699 COG1023 # Protein_GI_number: 15674167 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted 6-phosphogluconate dehydrogenase # Organism: Lactococcus lactis # 1 299 2 302 302 349 58.0 4e-96 MQIGMIGLGKMGLNLVKNMIRNGNEVVAFDLNEDNIKLAQEAGATPASSNEDLVNKLDAP RTVWIMVPAGKPTDSTVQALVGLLSKGDYLIDGGNSFYEDSIRHGKIAEEKGVNFFDCGT SGGKNGALNGGNFMIGGTSAEAFEHLKPLFEGISQKDGYLYTGKPGSGHYLKMVHNGIEY GMMEAIGEGYDVLDHSPYDYDNEAVAKVWVNGSVIRGWLMELAQEAFAKDANLDEISGKM FSSGEGKWTVQEALKQGIPVPVITDSLFARNRSMEQDTFTGKVVSALRHGFGGHAMDMKK >gi|238617815|gb|GG669606.1| GENE 47 53261 - 54298 534 345 aa, chain + ## HITS:1 COG:lin2983 KEGG:ns NR:ns ## COG: lin2983 COG2207 # Protein_GI_number: 16802041 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Listeria innocua # 24 345 1 323 326 224 37.0 2e-58 MLAFTQKSLYTSFIISVIGDTTMLDAILNKLMKTTPVEKEQLKSFEVHDDIPIDAFDPAL SEKDHAPVLNDHFFRNKRIYVSKHNRYAPYPEHSHTFFEINYMLRGSCDEVVDGEKVHLD TGDILLMDIGSRHSIGYLGTNDLLINILFRDRDINLELLNGLRSSQSVFYEFLLDRKLGG RGDIHHLLFSHAQVDEVQDTLDRIIDEYYLQRQFADTMISGYMSILIAQLVRNYHVKVKK PASKSQQLVLEILQDIDSDFQTVSLEKLAVKYKYNRNYLSNVFKRETGTTFSETLNKQRM LNAHILLTSTALPVSEVMKRVGIRNKAFFYRKYMGYYQKTPGSNR >gi|238617815|gb|GG669606.1| GENE 48 54832 - 56139 1093 435 aa, chain + ## HITS:1 COG:L0023 KEGG:ns NR:ns ## COG: L0023 COG2211 # Protein_GI_number: 15673612 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Lactococcus lactis # 2 432 5 434 508 300 40.0 4e-81 MQKQNRVYTPRKITIWRGIGYGIVDFVGGGSMTIIGAWMLFFYTSYCNLTAVEGASIIGA ARVADAICSLLMGSLTDNFYKTKLGQRFGRRHFFLLIGSPLMLLYITLWIAGMNYWYYFA TYMVFEVISSAMMIPYETLPNEMTDDYNQRTKLSSARMFISAGATFLATFIPGQLFAILG QHSPMPFLVNGTLFAIIFAIGVYVCYAVTWEKPVTEEMKKELEKDSVNHGSVFQRIWGLL KDYGSTLRIKSFRKHLLIYLFSFTGKDTFNTVFAYFCIYCLGLSATVAANMLSLSLIGLL VTIVAGFGMVKFGPKFLYEVGYGLMLLMLVGYYLIFQLHITSHTILLLFFVSLFYQIGRA TLEFTPWNVFPFIPDLDEIVTKRRRAGIFAAVMSFTRKSTVAVATIAVGFVLDGSGFTKN AATQSLATQHAIANI >gi|238617815|gb|GG669606.1| GENE 49 56432 - 56656 82 74 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2115 NR:ns ## KEGG: Lbuc_2115 # Name: not_defined # Def: major facilitator superfamily protein # Organism: L.buchneri # Pathway: not_defined # 1 68 436 503 504 98 72.0 9e-20 MLFGTGGLVLIALLVALTFKLDKRTHQIVLQEIVRLRNGGQKKDVKPEVAETVKELTGVS YDDVWPEDDLERNK >gi|238617815|gb|GG669606.1| GENE 50 56657 - 59401 1980 914 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2114 NR:ns ## KEGG: Lbuc_2114 # Name: not_defined # Def: alpha-L-rhamnosidase # Organism: L.buchneri # Pathway: not_defined # 1 904 1 905 908 1305 68.0 0 MVDTDQKLLMPTHLNVNLLSFAYNVEQSPVFSWWDHSRLSNSYQTAFQIVVSKRLHELAN QTYLFNSGWVAVTNNTAVKLAQLSSLLQAGELYYWQVRIKDNHGNISDFSEPNKFICDDK LNESPKGIWSSKTSTVDQELPKLGNVAFIRSPQITLNSAEIDTAVITAFSRGNEPLFAQG FDLFMNGRSVGVGSARPQADYDGSDQTGIYYNKYDVTEFIKNGKNVISSLATASSMRKAF WCQLDVYRTDGTKKRVIVTDSSWKALDGSSAFGDFGVKMRSLYFGQVSENVDMRYYPQNW TTVNFQDDGWDNAWVNPNVMVNTSERLVPYRSENTLRIDSHQPTKKISKLGPQNYLIDLG KEIIGGVNVHLDSQLLQRVTVLMGEQLKDDGHVRHHLACGPDYVENWTLVQGENSFTTLQ MKNYRYIELVGFKGDLKLNDINGWAMEQAFSETESSFESDNDLLNREYELSKYSIKATNQ DVFVDSQARERRPYEGDLLVNGNTSYVVSSHYSLGRHSLDYLIDNPTWPEDYKLFNVEMA WLDYLYTGNDELLHDRYDDLKVKFNRGKGADSFDGAAHDFMGTLRNGKGIDNFDEQVGLV TNDGLIDWPIRERDGFVEGEYNTPFNAIYFGTYRMMSKIAKVTNHPNDVRFYEQRANRIK QQLIDKLYDPQTGRFYDSLNKDLSVNKHTSHHASAYALCYGVYDGQNMADKISKFVANDG EFIGSVYFIYFMLKGLIDSGHANDAITLLTNDDNRKDKKTFAAILDQLNATIAPEAWSNA YKPNLTLSHPWGATPGLTIVQGIMGINPIKPGFETFRIKIRPGNLSYLRVTTPSSRGIIK AKYKRENRHVQINVDIPMNTEAVIDLEKGSQTVVIQDIDGNQLSGDLSTENRVTLSSGKY QISYELLRSKQLHV >gi|238617815|gb|GG669606.1| GENE 51 59420 - 60739 1166 439 aa, chain + ## HITS:1 COG:SSO1305 KEGG:ns NR:ns ## COG: SSO1305 COG0477 # Protein_GI_number: 15898146 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Sulfolobus solfataricus # 7 381 20 400 463 123 28.0 6e-28 MKKYGRYWNLTIAAGLGSMLGSGIIVGLASTITVWQLGLHLTNGQVGVISGALTFAIAFG SIFGSRFADKVGIVGIFDWVNFLYALGAGVCVFANGYWMLLIGTVICGIASGTDLPVSLT VISRDAPNQEMASQMVASTQIFWQAGQFVSTGAAFVVSTMSVTGGRIVFGFFAIVALILW VWRTLSKGIKVLHKEAAERLAQRESKQEEKVKVSMTQVLFKSPRRKVYMKLFAAISIYYI FWNFVANTFGQFTTFMFVKAGASQTLSTGIGLGLHIAALFILGLYVTIAGSAKRNTWFAI GVVFALVAMAGLAVFGSESIALIVAFMLIWGVGSMLSGEAIYKVWTQESFPEEIRASIQG FINGVSRFLCGLLAMVTPLLVLPTTIKMTMWGFVGIVLVFGIAGFCMIHFEKKYHMLKDD DKTGETTKKDSNVTATPNN >gi|238617815|gb|GG669606.1| GENE 52 60823 - 61506 539 227 aa, chain - ## HITS:1 COG:L0240 KEGG:ns NR:ns ## COG: L0240 COG1802 # Protein_GI_number: 15673615 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 4 223 7 227 227 179 45.0 5e-45 MMDNMRSDAYNEIKYRIIHFDYIPGQKISEKTISSELDLGRTPVREAIIRIEREGLIEVI PQSGTYITRIDMADAKDARFVRNCIEPSIMVDAAVKMTDNAKNVLEDNLRAQTKTAMNNE PDNFFDLDQDFHHEFYKIVHKDTVWQWLQINNTQLNRFRRLRLKESELNWSTLLDQHQRI FDAVLNQNIDDLTFLVTQHLHLMLLEKQKVLNAYPDYFKNYEETSKN >gi|238617815|gb|GG669606.1| GENE 53 61711 - 63336 1491 541 aa, chain + ## HITS:1 COG:L0241 KEGG:ns NR:ns ## COG: L0241 COG0246 # Protein_GI_number: 15673614 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Lactococcus lactis # 1 539 1 543 544 637 56.0 0 MVKITDNYLTDKKAFTDAGIKVPSYDITQKTGATRWVHFGGGNLFRAFHAAIADRLLESG DLDAGVVVAETHDPDVVEGVYKQYNDRILRVITHEDGKFEKELFASVADSLFFAADHQAE WDKLFKIFENPALQLATFSITEKGYNLWDTEGNLLPAIQDDIKNGPKAPKNNMASLTALM FARFKAGKYPMALLSTDNFSQNGERLQKSVLTIADGWAKNGLVPAEFVDYLKDDQTISFP LSMIDRITPNPSDTVSDQLKKDGFEDYQILHTPGHTNIAAFTNTEETHYLVVEDDFPNGR PALDKAGVILTDRDTVNDADEMKVTTCLNPLHTALAVNGSLLGFNSIAKEVSDPDMLNLI KQIGYVEGLPVVTDPKVINPKKFIDQLVNKRLPNPYIPDMPQRIASDTSQKLAVRYGVTI QHYIDDPKRQPADLNFIPLVLATWCRYLMAVDDQGKTFTPSPDPLLSELQPKVSDIKLGD KTDVHAHLKDILSNKSIFGHDLYAIGLGEKVEAYFASQISGTGAVRKTLAEALAKYAKNV D >gi|238617815|gb|GG669606.1| GENE 54 63397 - 64782 958 461 aa, chain + ## HITS:1 COG:L0019 KEGG:ns NR:ns ## COG: L0019 COG1904 # Protein_GI_number: 15673610 # Func_class: G Carbohydrate transport and metabolism # Function: Glucuronate isomerase # Organism: Lactococcus lactis # 2 461 15 469 472 596 60.0 1e-170 MAKKLFHDHASKMPIIDFHCHLDPKEIYENKNYENITQIWIYQNGFGDHYKWRLMRANGV PERLITGDGEDYDKFMAWAGTIEKAIGNPLYEWTHLELRRFFGIDDVFNRKSAPAIWKKA NDILKSDDFKPRSLIRNSHVQVVCTTDDPASDLKYHKLLKQEESQNGFKVLPAMRPDKAF NLTADSYNDYLKQLSEVSGVDITSFDTLVAALKQRFEYFRSLGGRLSDHGLNFFHFVPAS KGEMDAIIEKARDNQPLTDKEVNQYQTMLVESLMKLNKEFGWTMQFHMNATRNANKPMFK QYGPDGGFDSMGTQADLGQEFMKLLINMQTKNDIPRAIFYSLNPNDWMQLATGMGDFQQD GVQKLQLGAAWWFNDTFDGMKRQLTIMAEQSLLPNFVGMLTDSRSFLSYPRHEYFRRVLC NVIGEWAARGQVPEDEDYLGKIVEDISYNNAHDQFGFFDQD >gi|238617815|gb|GG669606.1| GENE 55 64794 - 65678 684 294 aa, chain + ## HITS:1 COG:L74167 KEGG:ns NR:ns ## COG: L74167 COG2017 # Protein_GI_number: 15673611 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Lactococcus lactis # 3 291 7 288 297 259 46.0 4e-69 MQTIKNDYFTADINEHGAQLTHLINRSESFDYIWNNDLWPKHAPILFPAIGRSNDDAYLV AGQKYEMPQHGFAGDADFEVVDKTTDQVSLLLVANEATKAYYPFVFKLRVTFSLSETGLA VHFNVKNDGVEDLSYSLGYHPAFNVPINGEGAFDDYRLAIQPVNHQLETYEIVKKPNPYR SGNIEVLPNYANGVVKLDHQMFEKGLLIIKSTGIKSVKLYSETDTSHSVTVDVSDFEHVT LWTKEGANAPFLCIEPFNGLPDVYGDLVELGEKEGNHHTSAGLTSSYSVKVDLK >gi|238617815|gb|GG669606.1| GENE 56 65775 - 66767 882 330 aa, chain + ## HITS:1 COG:PAB0514 KEGG:ns NR:ns ## COG: PAB0514 COG0111 # Protein_GI_number: 14520969 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Pyrococcus abyssi # 44 317 38 307 307 160 34.0 2e-39 MEYNIAVVNSSSFGQVFKEHWQELEKIGNVKRFMLPTDIDGKSLAEKLHGYNVIIASVTP FFNKDFFDNKDETLLISRHGIGFNNVDVKEAKKHGTQVTIVPQLVERNSVAENELANLMA LVRQVVPSSERERAGRYQDRAQFMGNEFSGKTFGVIGCGNIGSRVAELFSIFGGPVLVND PDPHVTSEWLTNNNVERVDLETLLKRCDYISLNASLDDNSYHLLNAETIKNLKKGAYICN NGRGALIEEKAISDAIESGQLSGYAADAMEVEPVKEDHPFLKNDRILLTPHTSAYTYECL HGMGEKCVGDVKDIVAGKRPVRELTHTLDD >gi|238617815|gb|GG669606.1| GENE 57 67001 - 68542 1364 513 aa, chain + ## HITS:1 COG:L52019 KEGG:ns NR:ns ## COG: L52019 COG1070 # Protein_GI_number: 15674166 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Lactococcus lactis # 1 512 1 502 519 516 48.0 1e-146 MDYIIGIDVGTTSTKALLYDTDGRIYAKANKGYTLYQDTPDMAEEDPDEIFNATLSAIQE VVSQSQLTDGKVVAISWSAQQHSLIALDENYKPLMRTMTWADNRAERYAAEYKQNGRGME IYKRTGLPIHPMGPFYKLLWLKNEKPDLYKKAAYWVGIKEYIIWRYTGTLKEEVSMAAAT GLLNMKTAQWDDVALKETGVKKSQLPELVNITNKFRGIHSEYAKVMGIDDDVYFVMGATD GALSTIGVGAIDTGVLAINIGTSAAVRTFVDQPRIDPKARLYCYPIMKGKYLVGGPINNG GIILNWAHDSLFGAEQEAAKLLDIDSYDMLSKIAATVPAGADGLIFHPYLGGERAPLWDA NARGSFFGLNRKHTRAHMIRAVMEGIMYNLYSVSLALKEVSGEPKAVLAAGGFARSKLWT QMMADIFENDITIPESYESGSLAAMFLAKMALGMEDDLADIKKYLGKEHRYQPNEETFER YRKLIPIYIRLSRDFSTEYKDIADYQREFTNDK >gi|238617815|gb|GG669606.1| GENE 58 68715 - 69038 298 107 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0631 NR:ns ## KEGG: Lbuc_0631 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 102 1 106 116 87 42.0 2e-16 MQYSAFKESLSSDDAFESFLKHFFSDHKQLEGSYETREYFESYRVRLNRHNKLALTTTTC LNIAAAAIPLRQTENISFSDFRRLVMNKKFADINATLAEVFEASLNR >gi|238617815|gb|GG669606.1| GENE 59 69494 - 70948 1407 484 aa, chain + ## HITS:1 COG:BS_yjmB KEGG:ns NR:ns ## COG: BS_yjmB COG2211 # Protein_GI_number: 16078296 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Bacillus subtilis # 25 471 13 455 459 438 51.0 1e-122 METTDAKAVVNDGKTKNHDDELMNDSSKRIPTHQKIAYGFGDFGNGFMFDLGQSYLTKFW IDGVGIGAGVVAGIFAFTKIFDAFMDPIAGSVVDNRKKIGKRGKFRPFMMVSAIILGVLT VVTFTMPDGLSMNQKIIYAYAAYMIWGLVYSFTNDPYGSLASVMSRNTQDRSFMATTRQI GSVGAQFIAGVAFIPLTVMIGGSNQRLGYFWSAAIFAAIGVLMFGICYLGTKENVHVNRS KTAQKEGFKDYFKVIFKNGPLGALILMTLFTISAMNTNNQMMVFYAEYNLGNIALQPVIN AIMMGCSIAGVFMIPTLTKHFGQKRTAMWSFAIGAAANLLNFVLPDHVVVFVILVTVGYT ALAIPNGITWAMVSNAIDYGEWRSGVRKEGITYAAFNFSRKIAQSIAALVSAGVLALTGY VANAHQTAGALRGIKAAMTLYPGVCLVLAAVVIGFLYKLDGERFGKIANDLDHGRWEGGK IGDK >gi|238617815|gb|GG669606.1| GENE 60 70994 - 72619 1372 541 aa, chain + ## HITS:1 COG:no KEGG:LVIS_0149 NR:ns ## KEGG: LVIS_0149 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 1 526 1 525 526 746 69.0 0 MNLNQLLDDVKEILAADGNYDQLSNKDIYTPSIQVDRRNVYFILHQTDSEGIIQKSLVVY ENRLTAGDFDAEDSLTDVDSTLLVGELNEKNNDALAKRFQWMRPTSRRNYKYTFGLGDRL GNASNAHLRLFKGRGIMPVLAQQSIRELVLMHRTNTDVFQSASWAVFEEGFTYGWGADGD HVKTPYEVDYAVKIGCSMITLDCTEEINNDIVNLKDDELDKRFNTLDPDQISYFNDTYLN KTFDLGNGRSVKFTKHDVEESVLTFYDAILFAAGIYKKFVVPYNLDFEISMDETPYQTTN PNHFFFANELHRRGITPTTMAPRFYGEFQKAIDYIGDTKRFEREYVIHEAIAEHFGYKLS IHSGSDKLSVYEIIGRVSKQHGWHVKTAGTNWLEALRVIAHKDPKFMLELYKFSYENLDD VKAFYVFNAQTDGTAPKPESITTENVMDLLDNDDARQVLHTMYGSIMNLKHNYHYVYRDK LWNILLKNQALYDKYLNIHIAEHLDLLQGIVKTKQEAQEKNEPKTDISKETIQELQETAK N >gi|238617815|gb|GG669606.1| GENE 61 72638 - 74056 1128 472 aa, chain + ## HITS:1 COG:L0019 KEGG:ns NR:ns ## COG: L0019 COG1904 # Protein_GI_number: 15673610 # Func_class: G Carbohydrate transport and metabolism # Function: Glucuronate isomerase # Organism: Lactococcus lactis # 1 471 1 465 472 607 60.0 1e-173 MSLLDNDFLLGNETAKTLFHDYASKMPIIDFHCHLNPEEIYENKNYPNITRIWLNEGTYG DHYKWRLMRANGVDESYITGDGDEYKKFVEWAKTIENSYGNPLYEWTHLELRRFFHIDEE FTQEFAPKIWDKTNQLLQTDAFKPRNLIKNSNVQVVCTTDDPASDLKYHKLLKKEEAQSG FKTLPAMRPDKLIQIDRDGFGEYLKTLSDVSNVDINSFADIIKALHQRFEFFNDMGGRLS DHSLLTYHFNEASEDELNAIVRKGVANDSLSQTEIDKYLTMLLENLMALNTEFNWTMQFH INSSRDLNRPMFDKIGPDTGYDAVGTQADIVAHITKLYTKMQDTNQVPKTIFYSLNSNDW MQLATMMGCFQGGTVQKLQLGAGWWFNDTAEGMDDQLRIFAQESLLPHFVGMLTDSRSFL SYPRHEYFRRVLCNFYGKLAEQGRVPDNIEKLGKIVQDISYNNAKNYFGFLD >gi|238617815|gb|GG669606.1| GENE 62 74028 - 74240 178 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509531|ref|ZP_03939580.1| ## NR: gi|227509531|ref|ZP_03939580.1| hypothetical protein HMPREF0496_1694 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1694 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 70 1 70 70 127 100.0 3e-28 MISHIKIIMGATGEKVKAQKTPGVLRISGCLLSLVYQIGDQGQLLTHALFATLVSQTGNL KPNPKSQNSF >gi|238617815|gb|GG669606.1| GENE 63 74229 - 75314 969 361 aa, chain + ## HITS:1 COG:BS_yjmH KEGG:ns NR:ns ## COG: BS_yjmH COG1609 # Protein_GI_number: 16078302 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 23 350 2 328 333 264 43.0 2e-70 MTNHSIGKEALEVKNIDKNENAVTIRTIAKMANVSHTTVSRALNGSSLVKPATRDKIADI ARQIGYVPNLNAKSLVTNRSYMIGIFFTNLDTGTSASFLTDVIEQAQGMLPKSYSLSINS VDNAMDGQSVSVNNFDGIIVISQSDSDDDFIDYLHKTGLPLVVLNRVIDRDDINNYAVGD ELGGKIATEYAIRMGHRKFALITGVDAFESSTQRTKGFMGAIKAHGIKLNPVLIKQGDYR PKSGNVLMRQILSSGNIPTCVICENDDMAVGAINACIELGYQVPRDISFIGFDDMGYSKY LVPPLTTVCKPTSTIIGMGVSRLVEIMENGQQDDIEQKIIDPEIIVRSSVLNMNKTDLTD R >gi|238617815|gb|GG669606.1| GENE 64 75466 - 76644 1150 392 aa, chain + ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 1 385 1 390 395 348 45.0 1e-95 MSKVLIVNAGSSSLKFKLFDMPKETVLADGQVERINMPGSIIKIKYGDGETFKRVEDNVD YERSAAIMLNNLKDLGVIDHLHDIDAVGNRVVAGSTVFDKVAKIDDKALNWIDELSEIAP IHNPVESEYIKIIRRILPETDQYAVFDSAFFKDVPEVNAIYGIPYELTKKFTIRRYGEHG INHGYITQKAQELLGYKTAKLVTLHLGSGASVAAEKDGKCVDTSMGFTPMNGLTMGTRSG DVDPALVPFFMKRMGASAEEVIEMFNDRSGLLGISGVSSDMRDLESSDDDRAKLALDIFV NRTVKYAASYITELGGVDAIVFSGGIGEHDKWVREQVCKKLEIFGIKLDGMLNEKQAPGD LSTKDSAARILLIPADEELAMVRDVADKINAN >gi|238617815|gb|GG669606.1| GENE 65 76756 - 77652 711 298 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1936 NR:ns ## KEGG: Lbuc_1936 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 46 272 33 274 301 79 30.0 2e-13 MKQIRKWLFNMAGVLTKYLNGWNSAIICVGLLFGISGITVGASTVNTKPVRETATTVNAM SKQFATAYYRLNQAKRVAIRFSGSAGPNLVVRHITLPKGTIVTDGSVNDNPVMNYTPDLS YYVKRRAYTKGTYGTGFLPAMFTFKKSGLTRVKRPAYLFPNQVNYFYTGGLKAFGDKNYH ADLVKITTDGYMEYYRYHPITFTEKHQQVTFDYRQKPNSYVKIRKTIKKGANTYLYFKSK LKGVSDKHIHRGGNYRYRLTIHNLHTPYSRIDPTVHYRLYASLYTFGGTPMYSIATVG >gi|238617815|gb|GG669606.1| GENE 66 77682 - 78557 642 291 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1936 NR:ns ## KEGG: Lbuc_1936 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 3 284 5 294 301 78 28.0 3e-13 MKKQLLLLFLGAFMGIAISNHQPVQAKTTYIHVSKSSLKDDPGLFTNRFYRINKKMKVNI HYSSKKDSRTIVKATILPKGTTITASGLFKKHAISEPGMTTDISYYLKRKTVSKALYGNG NLMFEFKLPTSKLTRVKRPAYVLPYGSGTMLSGGLKAITELPSRKSDALKITSDGWLEYY QYHLQSYPSIDMDGVRGTATSSYFTKPESAAKINRTLKKGANTYLYTGKKVKGIAQKKVR SSGPYKYRLTIHNHHTPVAYEDLAYGDDHAASSIYTVGGKQFYTVIAQGAN >gi|238617815|gb|GG669606.1| GENE 67 78815 - 79411 355 198 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509536|ref|ZP_03939585.1| ## NR: gi|227509536|ref|ZP_03939585.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 198 34 231 231 291 100.0 2e-77 MAQALLVMDSQYHYATKVNDDIHISQVKPITSIHDNHVMVTKGIKEGKTTYQAFVTKNKT NSKNHIILNKDKKVLVNREKNHQNQLVTNNHQYQYTNQFANLLFAGITNQNQLKQQVVTY NLGNDWYLLSKGQLKSVAKKLKSKSFQNKLTNTVKISVQKKIKRNPKLLKQPQKLKIIQN QLIKSKIGSLLKDSEASN >gi|238617815|gb|GG669606.1| GENE 68 79510 - 80925 1309 471 aa, chain - ## HITS:1 COG:L198289 KEGG:ns NR:ns ## COG: L198289 COG0477 # Protein_GI_number: 15672591 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 7 465 9 497 501 285 35.0 2e-76 MNESMIKEKKEPSIATIGIVLVLGAIVPMLDTTMTNVGINTILKDLSSTVNVMQWVATAY VLALGLAVPLAGWLLDQVSGRLLQEVSLIIFMIGSLVSGTANSIPALIIGRIIQGAGAGV IITGMSALAIRAAHGQNLGKLMSVIGLPIVFAPILGPTVGGALIKYLNWHWLFYINIPFV VAALIATFALLPKFTPSAKGKAFDFLGFLLITGTFSGIVIGITNYSADNIFGKLSVLLPV FLGIDCLLVYIIYAFKQPNKVLVPLGLFSSANFSASTALLFLSGLMINGVMFVLPLYLQN IRHLSVIWVGIYLIAQGVGMLATRSITGTLTDKYGARWIVITSMVGAAITTLPFAFFTAK TSEWLVLFVLFLMGLTRSGITIPVMSDAYTGLDPKLIPQATVATRMAQNIGGSIATAVLA GVIQSIVGNNVAADVTLNNAYQTAFIWTSIGTLLGVIPAMFLSNRIGKKAN >gi|238617815|gb|GG669606.1| GENE 69 81180 - 81803 452 207 aa, chain + ## HITS:1 COG:CAC3518 KEGG:ns NR:ns ## COG: CAC3518 COG1309 # Protein_GI_number: 15896755 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 5 206 3 195 195 119 33.0 3e-27 MEKTNKTHRRRGKALEDAILDATWQVIHETGYANMTMDDIAKTAHTNKNTIYRRWKTKFD VTTAALRKNVPVKKFTAPDTGSLRGDLIELLAAGVPIVKLIGMKNIKEIARDRLSAVQNA RQYSPKKSTEKAKQLSTDNLVVQYVMALLNRAYKRGELASDPQTFDVTIMNLPILLILSR VISESDYNLQTVVFLVDKILLPVFNAQ >gi|238617815|gb|GG669606.1| GENE 70 82005 - 82937 237 310 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 250 1 245 245 95 26 3e-18 MKMIETKALSKRFGKKQVISDVNLNVDQGDIYGFLGLNGAGKSTTMRLLLKMIHPTSGSI MIEGRDASSLPATFWNHVGYMIETPHAYPNFTVKENLVMYAKQRLIQPNQMMKRIETLAD QLLLTPYLNVKVKDLSLGNNQKVGLVKTLIHQPAILLLDEPTNGLDPESLVAVRTILKRL AENGTTIFISSHLLAEMEEMVNRIGILAHGHLLRELSFDQFDQERETELTVQSESKIDLL ADFLNGKGLETMALNEHELAISGVPIADYASLLHTIEGQGFRPTSFNPVKEDLESFFLRQ IGGRKHVVND >gi|238617815|gb|GG669606.1| GENE 71 82921 - 83613 595 230 aa, chain + ## HITS:1 COG:CAC3519 KEGG:ns NR:ns ## COG: CAC3519 COG1277 # Protein_GI_number: 15896756 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Clostridium acetobutylicum # 14 228 2 216 217 165 40.0 6e-41 MWLMIEVELKKIWRGRLPIYLFLAFAILLFFHIDSHTWSGFISEKLNWFTLVMGMMGFGI LSSWVFGREYQDQTFKDLLALPVSRNQIVGAKLISLTITEVLLALVSIGWLFILGLILHL SAFHATVILVLLERFAMSMIAAIGLTYLFPLLASLSKGLLMPISMSFAALLIGKIMAAES IGHYFPWSIPMLLSGKPGVVNLFSWLAVIVVAGIGVLGTMSWWTRGDHTD >gi|238617815|gb|GG669606.1| GENE 72 83729 - 83923 118 64 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MHGTTLISLDSKNKNLILANTTLSIVVVGLVMVASSKHSVNRIYSSKPTFAYFPRFPLTN RKLS >gi|238617815|gb|GG669606.1| GENE 73 84017 - 84763 634 248 aa, chain + ## HITS:1 COG:PAE1716 KEGG:ns NR:ns ## COG: PAE1716 COG2513 # Protein_GI_number: 18312827 # Func_class: G Carbohydrate transport and metabolism # Function: PEP phosphonomutase and related enzymes # Organism: Pyrobaculum aerophilum # 13 202 20 211 308 65 28.0 7e-11 MTKTTLLDYLDNRPETIIPASGDGNTFKALSAQSFPAMLLDATLTSRNLIAEDSQGMLTL SEYAKFLRDMRLKKTGVLIADLQSGFGNPLNTYYAAKELERSGGDILLLNDQTYPAHTTA KPLTTTPEDLIGKLRAAKDSFENPDTRIWIKLEGIHSYGIEGIIERIQYLAKAGADAIAI DHYDGQQLRELTQMKLPLPLLATWQPGTEQIDGITGWLDKGYLSTVIQKAQNQAINFIKQ GGLAYAEK >gi|238617815|gb|GG669606.1| GENE 74 84750 - 85658 1049 302 aa, chain + ## HITS:1 COG:all1863 KEGG:ns NR:ns ## COG: all1863 COG2513 # Protein_GI_number: 17229355 # Func_class: G Carbohydrate transport and metabolism # Function: PEP phosphonomutase and related enzymes # Organism: Nostoc sp. PCC 7120 # 28 280 24 275 287 216 43.0 6e-56 MLKNERMRTQFKDEVMSGHIVRMMVAPDALAAKIAESEGAQAVFSAGYATSASALAMPDR GIADFGLSLERCRQIVNAVDIPVFADADTGYGDIDNIRRTVENYEAIGAAGMFIEDQVWP KRCGHMDGKKVEPTEVLEAKIRAAKAARKHDNFLIMSRTDARAVYGLDDAIARSKRYREA GADLIFIEAPQSVAELEKIHEAFPNTPLMANMIEDGKTPLTKTADLERLGFNIVVHPNAM TYTQAFAEKTLIETLRRDGTTKAYKDRMITFPKFNEFVGLDKVNARNAGYSPEKMKKVYM NE >gi|238617815|gb|GG669606.1| GENE 75 85754 - 87064 1358 436 aa, chain + ## HITS:1 COG:ydjE KEGG:ns NR:ns ## COG: ydjE COG0477 # Protein_GI_number: 16129723 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 12 436 5 446 452 207 30.0 4e-53 MADNIYTEYHKDSLETRLNDARETPLFYKVFALAGAGMILDAADVYMAGAINSTLIQDKF ASISQGSFFLSSGFLGLFIGSILAGYIGDFYGRKLSYHFNLLLFGIFTLLSAFTPNMTIL IALRFFAAIGLGAEIVTGYAVVNEFAPIKRRGHWSGMTAIVANTGAPITLLIASFMIPRF GWRSMFMTMGVLALILWLARRHFPESPRWLLSKGRTQEANQIIEKLTVNGLYEKDELKDA DEPVSHISFAKGLFIAIVAVSATLLCQYTFTSWVPTLLLKQGINIVDSISFSAIMMIGAP IGAAIGALLIDRTGRKKLILTAFIATAVLGIAYAYERSTSGILINGFLLTMTLYILVASV VSIYTNELFETAHRFRGAGIANGTSKLLNVLMPTFVAVMITRVSPSFIYYAIAGLAVIAA IIIGLFGPETDQKAIK >gi|238617815|gb|GG669606.1| GENE 76 87207 - 88190 694 327 aa, chain - ## HITS:1 COG:BS_yxeI KEGG:ns NR:ns ## COG: BS_yxeI COG3049 # Protein_GI_number: 16081005 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Penicillin V acylase and related amidases # Organism: Bacillus subtilis # 1 327 1 328 328 251 40.0 1e-66 MCTSVTFLSETGDNFLARTMDFDFDLDGRPVVIPRHQHFNSDAGKDGYDTKLAFVGAGRN IGNYILVDGVNERGLSGAALYFSNEASYANQIKSDQTNIASHEVLNWLLGNADSCEDAAD LIKKLNVVNVPIKLLGKVVPLHWILSDRYGDCRVLEIRADGVHYLKNPVGVMTNSPDFDW HLKNLNNYTELQPNPHPDRDYSGYHISSFGPGNGALGMPGDYTSVSRFVRTAFMRQYTIS AQSKDAVNVLSHILNSVEIPKGVKLKENGDSDYTQYRGYMDSSRLTYYMQPYDNQTISKV TLTDTLMNNDRPVEFPLTHEQTYQTLN >gi|238617815|gb|GG669606.1| GENE 77 88246 - 89175 796 309 aa, chain - ## HITS:1 COG:HI0522 KEGG:ns NR:ns ## COG: HI0522 COG2364 # Protein_GI_number: 16272466 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Haemophilus influenzae # 33 210 32 204 218 72 23.0 1e-12 MISNTKEDSSDSDPANINKFADVGLRTLMAFVGIAILSSGTTLLREGNVGLDPFTAMNTG LAAKINTGLGNAQLMVNLIIFVLILILDRKKIGIGTILNMTLVGYEIQWLSSAYKMILPN SINIFTTVANLIVGLLLFTLGSSLYMGANLGVAPYDAIAPIASTRLHIKYRSARITQDVL FMATAFFIGGAVGFATIIVAFFTGPLITYWDTHVSEKVKQGITNFSSTPSFSTAGKQLAS VGKSSYYTVRRAYELTEQTQRQLSNYSNQELNDRIERTRNRSKQLGQVYENTQKQLRLLQ GEADKRRNN >gi|238617815|gb|GG669606.1| GENE 78 89383 - 89955 513 190 aa, chain - ## HITS:1 COG:BS_yckA KEGG:ns NR:ns ## COG: BS_yckA COG0765 # Protein_GI_number: 16077406 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 2 186 30 219 226 168 50.0 5e-42 MSLYLTAISFIGALILGLFLTLAQMSHFKLLHWPARAFISFMRGVPMLVLLFIIYFGFGA NALPAAVIAFTINCSAFVSEVFRSSFSAVDRGQWEAAYSLGLPYRTVIAKVIFPQAFRIA IPALGNILLDLFKSTSLAAMITVSEMFMDAKIIAGAYQDYMSIYIVMAIIYWFFCWLMTV GQTQLEHALT >gi|238617815|gb|GG669606.1| GENE 79 90055 - 90900 904 281 aa, chain - ## HITS:1 COG:BS_yckB KEGG:ns NR:ns ## COG: BS_yckB COG0834 # Protein_GI_number: 16077407 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 14 269 15 277 287 233 48.0 4e-61 MRTFKFRWLGLLGTIGIVLILLTGCGKSNSSSNSKGPLICATSGTLYPSSFHNEKGNKLT GFDVEIVRAVAKKMGRKVEFKEMNVDGQLTAVKTGKADIAANDFSVSPAREKQFALSTPY KHSFNSLIVRQKDDSSIHSWADIKGKRAAGEAGTSYQRLAKQLGAKPVNYDNVSNDIYMK DVKNGKTDLIMNDYYLQKLALAAVPNNGLKILSNMYFKTNEDGKGTGIIMKKGNTKLQKQ INKALAELKSDGTLRKLSEKYYHADVSKQPKVHISKAFTIK >gi|238617815|gb|GG669606.1| GENE 80 91135 - 92151 1000 338 aa, chain - ## HITS:1 COG:CAC1349 KEGG:ns NR:ns ## COG: CAC1349 COG2017 # Protein_GI_number: 15894628 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Clostridium acetobutylicum # 4 334 3 337 345 209 39.0 4e-54 MQAKKELFDKYNDQDIQKFTLTNDNGVSISVISLGATWQAFNFPDKNGKTANVLLSQASS KEIMANQYFCQAIGRTAGRITNGTFSIKGKEYHVDQNEGNTTLHGGPHGFNTQVWNGSIE DNKIVLEKHIDSSEDSFPGNIDVKITWTLDDDNTATVTYSAKSDADTLFNPTQHAYFNLS DANNVYGQSLTIDADNYLELNKDKTPSGKMISVAGSAYDFRSGQNIKNGIDDMKASVGHT YDEVYVINNHKAEDPIATLSDPDSGRQVSIFSNRNALVVFTPDDLDGVKFERGAGVPHMG IATEAQTLPDTPNHKGFGDIVLPAGEEKSYSISYKAEF >gi|238617815|gb|GG669606.1| GENE 81 92342 - 92527 154 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509549|ref|ZP_03939598.1| ## NR: gi|227509549|ref|ZP_03939598.1| hypothetical protein HMPREF0496_1712 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1712 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 61 1 61 61 111 100.0 2e-23 MQNILYILSGISDVSLIVLIFLWGFDYARKEKPKHNHHFGLWTLATLALTVVLMFAAGAG K >gi|238617815|gb|GG669606.1| GENE 82 92660 - 93760 1054 366 aa, chain + ## HITS:1 COG:BS_araR KEGG:ns NR:ns ## COG: BS_araR COG1609 # Protein_GI_number: 16080450 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 361 23 383 384 276 39.0 5e-74 METKYVMVKKSLKHHIINGKYKINEKIPTESELMAIYSVSRYTIRRAVGDLEHEGYIYRV QGGGMYVNDWINNKVRSERSNQSIGVITTHIADYIFPNIISGIDQVISDAGYSLLLGNTH DEHDNERHNLLNMLDNDVLGFIIEPTRSTLENPNLDVYQMIIQSGKPAVFINAHYPELDF PYVEVADTASEKKLMDYLLDHGHERVLGVFQVDDMQGVNRMNGYIRSYQTHPNVASSGDI MMYRSGDDINDVLRKIKNRVEVPDNARPTAIVCYNDQLAMEVIGMLGKEGFDIPGDISVA GFDDYEISKYINPGITTMIHPKRLLGETAAKMLIDMINKKEHRSKVFDAELVVRDSTKAI DTTKTV >gi|238617815|gb|GG669606.1| GENE 83 93996 - 95369 1497 457 aa, chain + ## HITS:1 COG:L140856 KEGG:ns NR:ns ## COG: L140856 COG0477 # Protein_GI_number: 15673485 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 426 1 431 433 387 51.0 1e-107 MKKVSNGFIYSFGALGGLLFGYDIASISGAILFIEKQLHLGPWQQGMVVSSVLIGAIIGA LATSKFLDTYGRRKLLVWASIIFFIGAITSGFAPDFWVLLITRIVLGVGVGITSALIPAY LHELAPKSMHGAVATMFQLMIMIGILLAYILNYTFAHMYTGWRWMLGFAALPAAILYVGA LFLPESPRFLVKVGKKDEARSVLMNTNKGDEGAVNKAMSEIEETASQKTGGWKELFGKAV RPALITGLGAAVFQQVIGSNSVIFYAPTIFTDVGWGVIAALLAHIGIGVINVAVTVVAML LMDKVDRKKMLIFGASGMGLSLIVMYTILKFDSGSQTAAMVSAIALTVYIAFYACTWAPI TWVLIGEVFPLNIRGLGTSLCSATNWLADMVVSLTFPMMLSAWGLDNAFLFYAVVCGIAI FFVHAKFIETRGKSLEEIELDLHKRAGIKESDTSAIK >gi|238617815|gb|GG669606.1| GENE 84 95450 - 96874 1426 474 aa, chain + ## HITS:1 COG:CAC1342 KEGG:ns NR:ns ## COG: CAC1342 COG2160 # Protein_GI_number: 15894621 # Func_class: G Carbohydrate transport and metabolism # Function: L-arabinose isomerase # Organism: Clostridium acetobutylicum # 1 468 1 468 488 580 61.0 1e-165 MLQVPDYEFWFVTGSQHLYGEEQLKSVEKDARDIVDKLNATNKLPYPIKFKLVATTADSI TQLMKDANYNDNVAGVITWMHTFSPAKNWIRGTKLLQKPLLHLATQYLNHIPYDTIDFDY MNLNQSAHGDREYGFINARLRKNNKIVYGWWGDEDVQQEIADWEDVAVAYNESFKIKVAR FGDNMRNVAVTEGDKVEAQIQFGWTVDYYALGDLVQAVNAVSESDIDAKYKELQDKYEFV QGDNDKDKYEHSVRYQIREYFGIKNFLDKENYTAFTTNFEDLYGLEQLPGLAAQLLMADG YGFGAEGDWKTAALDRLLKVLTHNQSTAFMEDYTLELQKGKEAILGSHMLEVDPSIASDK PRVEVHPLDIGGKADPARLVFTGREGDAFDVTISDFGNEYRMIGYAVEGHKAPKPTPHLP VAKQMWTPKVGLKAGATQWIHDGGGHHTVLTFAASEQQIADLATMFDLPFNDIK >gi|238617815|gb|GG669606.1| GENE 85 97185 - 97745 478 186 aa, chain + ## HITS:1 COG:ylaD KEGG:ns NR:ns ## COG: ylaD COG0110 # Protein_GI_number: 16128443 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Escherichia coli K12 # 4 185 3 183 183 184 47.0 1e-46 MAMTEKQKMLAGKKYLNTDKELSEDRWKTRKRINEFNDLSKEAPDEAMKILSNIFQKTGK NFEVMAPFQCDYGYGITVGNNFFANYGCTFIDVASITFGDNCLLGPNCQIYTVDHAFDVE ERNRGIEIPGKVTIGDNLWAGGSVVITPNVTLGNNVIIAAGAVVTKSFGDNVLIGGNPAH VIKELK >gi|238617815|gb|GG669606.1| GENE 86 97760 - 98617 865 285 aa, chain + ## HITS:1 COG:lin0819 KEGG:ns NR:ns ## COG: lin0819 COG0656 # Protein_GI_number: 16799893 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Listeria innocua # 5 273 2 270 274 277 49.0 2e-74 MSKQNIGSRIELADGNKMPVQGLGVYRMTDEDQLINSVKSAYSDGYRLFDTAQMYGNEAA VGKAIKDLNVKRDEIFITTKIAEENQGYDKVMSSFEDSLKKLQLDYVDLLLVHWPIHTHF FETWRAFEALKEQGLVKSIGTSNYGMLHLQYLATKANDMPVVNQLEVHPYLSQQAMVDFD RDNHIVTQAWAPLGRGRIFDDPVIVKIAESHGKSAAQVILRWHLQRGDAFIPKSVHPQRI QQNADIYDFELSDDEMNQVDGLNRNTRISQEPEMVYEIGHQYPHH >gi|238617815|gb|GG669606.1| GENE 87 98673 - 99491 915 272 aa, chain - ## HITS:1 COG:lin0435 KEGG:ns NR:ns ## COG: lin0435 COG0428 # Protein_GI_number: 16799512 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted divalent heavy-metal cations transporter # Organism: Listeria innocua # 1 272 2 269 269 235 52.0 7e-62 MTYLLNFAPWQQALFATLFTWGVTALGSALVFAFKTIRSHALAMMYGFAAGVMIAASFWS LLDPAISLAEELDKTPWLVVSSGFILGGLFLYVADKIIPALYIRHNENEEPPHKVKQAIL LVFSITLHNIPEGLAVGVAFGAIQAASSAQHATMVLAAVTVAIGIGLQNFPEGAAVSIPL RQNGMSRPRAFMYGQASGMVEPIAGILGALLVSYVSQILPYALAFAAGAMIYVACKELIP EAHARTKSESHWAIFGIMAGFTLMMILDVALG >gi|238617815|gb|GG669606.1| GENE 88 99716 - 100396 543 226 aa, chain + ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 7 219 3 216 224 132 35.0 7e-31 MRLILVKKVTAYLVRHGQTYMNLYNKVQGWIDSPLTEKGIQDAKSAGERLKDINFNAAFS SDSGRAIDTARIILRANPHNINIVSYQYPELREQFHGYFEGNDLNQMWQFVGAQVQKTSE KEVLKDFGLERARDLIHRADLYNNAENNAMFWERLNFGFDKIRESTEDNQTILIVSHGMT IRSIVDRYAPDLDTGVPIANGAITKLVISDDDIKVEWANKLDAIDR >gi|238617815|gb|GG669606.1| GENE 89 100700 - 102325 1265 541 aa, chain + ## HITS:1 COG:BS_ykpA KEGG:ns NR:ns ## COG: BS_ykpA COG0488 # Protein_GI_number: 16078507 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 540 1 538 540 685 60.0 0 MITISEMGLQLSGKKLYENVNLKFTPGNCYGVIGANGAGKSTFLKLLEGKLTPTTGNVHV DKNERISSLSQDHYGFEDQTVMQTVIQGYKHLYDVMQEKDALYAKADFSDEDGIKAANLE AEFAEMDGWNAEADASQLLQSLEIPEDLHEQLMSELTEGQKVKVLLARALFGEPDILLLD EPTNGLDVYTIEWLENFLADYPKITIIVSHDRHFLNQTCTMMCDVDFGEIRMYVGNYDFW LQSSQLAAKMKTDSNAKKAEKVKELQEFIARFSANASKSKQATSRKKQLEKITLDDIKPS SRKYPFIKFEEERPLGNDLLRVDKISKTIDGVKILDDVTFTLRPGDKTAIVSRNDLATTT LMQILAGKSQPDAGEFTWGQTVKMSSMPKDFASEFNDNDLRIIDWLRQYAPKGSDDDAFL RQFLGRMLFSGDDVDKKVKVLSGGEKVRCMLSKMMLEKGNTLLMDDPTNHLDLESITSLN EGLVGFPGSIIFTSHDHEFIQTIANHIIEVSNNGIIDKADTTYDEFINHPDVQKKLADLY D >gi|238617815|gb|GG669606.1| GENE 90 102507 - 102707 101 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509558|ref|ZP_03939607.1| ## NR: gi|227509558|ref|ZP_03939607.1| hypothetical protein HMPREF0496_1721 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1721 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 66 1 66 66 119 100.0 9e-26 MPQVKASEVLKLLKRNGFRELKSRQSGDHHRFVDDRGHKVTIPFASKKTVIAPGTYQSIL KQAGLK >gi|238617815|gb|GG669606.1| GENE 91 102735 - 103133 351 132 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1935 NR:ns ## KEGG: Lbuc_1935 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 95 1 95 127 132 68.0 5e-30 MKNPDYVVYPAIFDNTGNDGYYTVTFPDIPDTVSQGKTLTEALKEAPDAIAVALPDYPIY PKPSDIKKIQAKNPNLVVSLVGVDMKSKLKQMKKRTVHKNVTIPVALADEAKKRGINFSE TLTNALQEKLNA >gi|238617815|gb|GG669606.1| GENE 92 103410 - 104267 680 285 aa, chain + ## HITS:1 COG:CC3566 KEGG:ns NR:ns ## COG: CC3566 COG1131 # Protein_GI_number: 16127796 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Caulobacter vibrioides # 20 234 28 243 294 179 41.0 5e-45 MSYGKTKIFSDLNATLHDGGLIGLLGPNGAGKTTLLKILTTLQKPTKGDVLIDGTSMIAH PNVMKNLLGYLPQQVPYFPNLTAGEYLNYIAGMKGMKAKEARRETESLLERLHLADTGHK RLKDFSGGMRQRVGIAATLLNDPKIIIADEPSTGLDPEERVTLRNILGELANDHLVLLST HIVSDVEAIAGQILLIKEGHFLYQGTPSDLIKRSIGHVWEYPVTTADTSPLTAKQLEEPT NSLIQRPDGIQIREIAKTPRQPQARQVLPSLEEAYLGALKGVISL >gi|238617815|gb|GG669606.1| GENE 93 104264 - 105790 771 508 aa, chain + ## HITS:1 COG:no KEGG:LC705_01548 NR:ns ## KEGG: LC705_01548 # Name: not_defined # Def: ABC transporter permease # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 9 495 9 495 502 212 33.0 4e-53 MKDSFQATFREKYRRMSFVALCIALIFSVSLMIPRGSGVMRAIIVNPDTYQQANNASWAS ISVSFMMGFFLPLIGATFLRNTIRMDRDNGTMTLFLTTKFSKLNYIMGKFLSNLCLMLIF WLIILIFSLIGTLLKFGQTTFNLGQFLMPFLILLPGLIFVSALTIFTEFIPGLRGRLGTA GLVAFLAILYAAGANYQHTPGHLLRLFNLSGSGYLITNIKQAVVQSSGKPLTLLKVIGAS TSTRYTGAHNLVFPTLKLTGLDFLNMGLLVLLGIGLVVLAALLLERRPISAYHMGRWEMR LPAFRLPAKRLPAMEMNGIKHSQFYISSRLLTGGVTNYWVLIIMIIWLWNWGSTYSGLIH SAFPILFLAVIPLFAELGAGGVQNDVYQWLRTIPNGQRRQTLRECLAGIALSIFLVLPAL SKVPAFMMVALFIWAVQLPLVCQLLGRLTGSKRPVQLVIVLFFYLYINGAPLLPFDQSGL TLPTVIYLVIGLGSLSLLFFPKIYPIKN >gi|238617815|gb|GG669606.1| GENE 94 105855 - 106280 464 141 aa, chain - ## HITS:1 COG:no KEGG:LJ0243 NR:ns ## KEGG: LJ0243 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 4 141 1 137 137 85 41.0 9e-16 MTNIVSGTLTVIFDPPFYKGIFECHFAETYQIAQVILGTSAPTSRQIEEFLIHRWKSLDF FQSDQVPIPLIRKISPKRLSRLANKSIRTTGVGTKAQQALQKQRESKKAAHKKQYKMFRD QQKQLIYQKKRKKHQEKHKGH >gi|238617815|gb|GG669606.1| GENE 95 106833 - 108047 1168 404 aa, chain + ## HITS:1 COG:lin0289 KEGG:ns NR:ns ## COG: lin0289 COG0624 # Protein_GI_number: 16799366 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 1 379 1 378 378 264 38.0 2e-70 MRKDEQLQILKDLIKINTENGNELETAEYIGGLFKLHHVPYRIDRFDGNRANLVAEVGLK ETDEVLGITGHQDTVNVSDQRAWTHEPFAAEVVGDKLYGRGAADMKSGLAAQIITLIELH EQRAVKGTLRFIATAGEEYGTPGANRLLKQGVVDDLSALLVGEATDGQIVYAHSGSLNYR IKSYGQSAHSARATQGINAISGLLQFATAEATLFQQAPLDSILGAVKHSITVIGGGEQVN TIPDYAELSGNVRPTQRFDNQQVIALIQTAISQINQQTDYHLEFDLIHSFPPVETTPDNP FVRLVQRAAADAFVDRNVALEITNGATDASVFIKGNPTMPVVILGPDEKAVSHQVDEYTT LSGFYQVIAAYEDIAVSYFKAGSRTEQLAADVVSPQIRPARQAG >gi|238617815|gb|GG669606.1| GENE 96 108064 - 108432 220 122 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1930 NR:ns ## KEGG: Lbuc_1930 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 4 120 1 116 118 100 45.0 2e-20 MSQLRYSIIITKVLNKLVTFNWGITLLSFITAIILYPQLPGQVPDHINVVGAADGYGNKL TIFIMPIGLLVIGFLSSSKLIDSRYADLTIQNTFLKTLMLAILILLWYGTGLFFFTYAQL LR >gi|238617815|gb|GG669606.1| GENE 97 108534 - 109271 387 245 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0017 NR:ns ## KEGG: Lbuc_0017 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 25 210 57 262 297 102 35.0 2e-20 MDIYNKYTWTSGKADAAIYYTNTNKNAYIWNSRFNKKLHNLKNYPYTTWYISRSFVRKNK VYYSISNGGKVKGVVWHGYVTPAVVKNLNSFNSDSDYLSYLNTDKSQKLSRALLKLIPNA NVSLNLSQQASMNKITDYQNIINLGTVSGTVTEGAITHKTIVHDFLMGFSATNAAKAKTA GKMLAAKGYTSDKLASLMSQGYQVGIYVNDGAATSVGKSGYPSTISFKSSVQNNMAFVIA KPKEN >gi|238617815|gb|GG669606.1| GENE 98 109450 - 110292 751 280 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0838 NR:ns ## KEGG: Lbuc_0838 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 55 259 44 252 276 118 35.0 2e-25 MKKYLIIILSVYSLITGLTCLIGDQANAKSNSNYQIIASKHVNTYKALNSFNNNSILHVK NQYKNKNVYVWNKEHTKVLYNLKDFPNSYLSALTKQTYLHGGHKSLYYAAYIVTPKGNSS RYGRIWQGYLTKGYNRHYQKLNYLSTVGFTNDQDYLNYIKKSPSQVVARAVLKLFPNSKL SLRLSNLGQFNSDVDSTNKPFEEYFTNRINLQKVAAYLGPTKSKLTSSQRITKIKQTLVS EGYTTSKRHAMSHYVIGIYDPNPNMAWEEFVWSINLAKPL >gi|238617815|gb|GG669606.1| GENE 99 110392 - 110877 245 161 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509567|ref|ZP_03939616.1| ## NR: gi|227509567|ref|ZP_03939616.1| hypothetical protein HMPREF0496_1730 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1730 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 161 1 161 161 286 100.0 4e-76 MPVLFNSQQAYLNDLNSNKALKLTRLVAKLFPNSKINLNLSKSLYLTQPQNAYLLNSFTN TKELDLNKQTGKWSVSEYERMASSKAIKLIDQRLTELGYDQNKRNSMSDYDIGLNIVGYA QSFYKQSDLKTANQYRYPVTLPGFRDMEDYQACAIQLGIPK >gi|238617815|gb|GG669606.1| GENE 100 110832 - 111239 216 135 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509568|ref|ZP_03939617.1| ## NR: gi|227509568|ref|ZP_03939617.1| hypothetical protein HMPREF0496_1731 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1731 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 13 135 13 135 135 212 100.0 9e-54 MLKKSLSFLLLLGAIFLSLASVGSVSANTIPSNYSFDGSKFTGPIPYYSSTKSQKAYIWN NTQTKRIHNLKNYPNTVWLVSKAFVKPVKGKNEVYYKLYSAYKKKLKGLPGTVISKKALL SCRFSLIANRPTLTT >gi|238617815|gb|GG669606.1| GENE 101 111456 - 111704 123 82 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509569|ref|ZP_03939618.1| ## NR: gi|227509569|ref|ZP_03939618.1| hypothetical protein HMPREF0496_1732 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1732 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 82 1 82 82 144 100.0 2e-33 MRYYLKGEIGLNIKITETGISDFVRFLGIVCMASVLWITKQMGMAFWGSGVIVGIVSIFF SPGYFLNKIVFNYFKRLQKKEK >gi|238617815|gb|GG669606.1| GENE 102 112238 - 112933 608 231 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0802 NR:ns ## KEGG: Lbuc_0802 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 24 226 35 237 237 204 61.0 3e-51 MAIVSVTFINLAINVRASTTDAPTVTLNEPLQTDPNTRNYLPTGTEALYTKIPNQKDAKI SVKATDLKSVATTADQGQTYFRGYRVAQTSDGKFYLKVVSFNKAYRGWIYVGNNNPSSDT TSVTNGLTSVQTFKEETPSDTVAKTTFYFTTPKASTLTYTAPDWTQYKVGRNLNATTAYV NDALKVTQIGTKQNNRDNNATYYYVEDSANPQVNGWIKSSEVSAVKQTFNY >gi|238617815|gb|GG669606.1| GENE 103 113328 - 115142 1439 604 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0803 NR:ns ## KEGG: Lbuc_0803 # Name: not_defined # Def: N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD # Organism: L.buchneri # Pathway: not_defined # 16 604 32 617 617 797 70.0 0 MGAAVGLFSICMATGVNAKAKETLQVDFQQAAKKYRVPVKVLEAVSYNETRFDAHNGKPS VAGGYGVMHLTDVNGSTITGTDNTSKALPDSAALHTLNKAAGLTGYSTKRLKEDTRTNIN GGAALLAYYQKKLGHSLTSHANSWYGAVEKYSQDTTKQAAAFFADNVYKTIKKGVTKSGV ILTAQKVKPLKDQSEKLDLASVPSTTDGPDGLPVEWVPALYKEFDNKGDYGNYDLANRPS DGLKINYIVIHNTETTFDEATNLFASTPSYTSANYVISSEQGTVAEMVRPQNVAWHAGNW YINSHSIGIEHEGYAAVGGYWYTEAMYQSSAALVKYLAAKYNIPLDRQHIIGHDNVPGLT PAAQKTMHWDPGTYWNWQHYFDLLGVNFKDSQGTGSIVTITPDPDHNLTADSGQKVTDDG VDLPLKGSNFVYLYQQPGFDSSLISDKDFSTSSVGTTEKDDWTDKAVDGQQFYKVGQSGD WTEIDYGGQPAWFYNPNDANTTNATGKLVTPKGSSTIPVYGSAYPTSSILKKNKVTGTKP SPIYTIAPGQKYVYGGEMTSDYFNSHFNSNSAKNVIKGNDQYVQIQFNHRIGFVKAADVT VSDE >gi|238617815|gb|GG669606.1| GENE 104 115196 - 115627 301 143 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2082 NR:ns ## KEGG: Lbuc_2082 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 140 1 130 155 70 30.0 2e-11 MQKTKGLLFPVVFLALVLTGCSSSSQQKDNKPANQKTGDWAVVYNASNKKVTTLRSKSAI DYISDKTGDDGGNHPNGINKDVPAGSKLRYRYDLYQSKPRVKISLYVYSNKYAKLTNLPV ISKISWKMSNQEFQKFNHPKEIE >gi|238617815|gb|GG669606.1| GENE 105 115708 - 116301 421 197 aa, chain - ## HITS:1 COG:mll1286 KEGG:ns NR:ns ## COG: mll1286 COG2249 # Protein_GI_number: 13471345 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Mesorhizobium loti # 3 188 2 187 195 99 29.0 4e-21 MKKIVVVYCHPYNQSFNHAVLEQVLTNLHHQNMTPELIDLYAEQFTPVYDAEELRLFHQG KTHDPLVTKYLNMLRNADGIIFITPVWWNDLPGMLKGFIDKVMKEGEGLSHTVTKTGVHG ELTNLKHAYVFTTSTSPTFYLRMWCGNAIRKIFIKVTLKQLGIKSGTWLNFGSISTSKPE KRQTYLKKCGEMTLDFS >gi|238617815|gb|GG669606.1| GENE 106 116301 - 116753 244 150 aa, chain - ## HITS:1 COG:no KEGG:LCABL_17670 NR:ns ## KEGG: LCABL_17670 # Name: acrR2 # Def: transcriptional regulator (TetR/AcrR family) # Organism: L.casei_BL23 # Pathway: not_defined # 1 150 39 187 188 98 36.0 9e-20 MTTGSFYKHFDSKDDLFRTVTATLSERLSQQARQTATKEKDPLVQLIDLGEFIIIQFKKQ PNLMGFLFFNNSILDLYQHNGTSHFPLLDDTHQLIKKIMAVYPTHDSEKTLFVKVWAFIQ GYAMLIQNNAADYDRVLLTNTAKEMIGVKS >gi|238617815|gb|GG669606.1| GENE 107 117085 - 118479 895 464 aa, chain - ## HITS:1 COG:SPy0570 KEGG:ns NR:ns ## COG: SPy0570 COG0477 # Protein_GI_number: 15674660 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pyogenes M1 GAS # 2 419 5 417 455 238 36.0 2e-62 MEEKISRQTLLSLLAAALLSFTGILTETSMNVTFPELSRLFNITLDTIQWLTTGYLLMVT IVMATTAYLLKKFQAKSIYVFAASAFIVGDLLCAVAPSFSILLVGRIIQAIATGLSTPLM FHIIFTQIPKGRIGSMTGLAGMVISLAPALGPTYGGVISSITTWRLIFWLILPIVLIGLF LGIRYINIAPFGTDNSFDVLSLLFLAGTLTAFVYAVSKAASFKLTNLSVVLPIIVGLICL VLFIMANSHGESGLLDLSILKQATTSLSAFTYFSLQFINIGISFVIPVYCQYVLHTSAMV AGLTLLPGSIIGALTSPFAGNIADSHGYALPITIGLSCLTLGSLVFLVAQQWLTALLVVF AFCILRFGFNMGFSNSISNASINVPKENTADINSFFNMLQQFAGSIGVGIMAAIMASSQN SGHGSFVQRSYIGGHYDYLFVTILSICALIAAVINFRLQKRAQV >gi|238617815|gb|GG669606.1| GENE 108 118591 - 119454 805 287 aa, chain - ## HITS:1 COG:BH3627 KEGG:ns NR:ns ## COG: BH3627 COG1307 # Protein_GI_number: 15616189 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 2 280 3 279 283 171 33.0 1e-42 MKTAVITDSASYLDKKLAAQYNIKVLPITVIFGTEQYQDGVNITSHEFLEKLANADKLPT TAQVTMQQMQDAFDELSAAGYDEVICVNLSSGITSFYENLVAYSKTVKNIRVYPFDSKIA SAGEADLALLAGTMAQNGENAKTILPRLIDLRDSIHVSLVVDSLDHLMRTGRISSTSAFV GNLLRIKPMLTFDDNGKIVPLGKARTMKQALAKILDEIENSLSDIDGQLRISVADADNPK LSKQWVTEIKERFPNAAISTYQISPAITVHTGEKAMGVVWDCDWEAM >gi|238617815|gb|GG669606.1| GENE 109 119601 - 119738 66 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSKGTFYQGDALFVVLTFIIDIAIIAAVIYFGIKLFRAITNRNKK >gi|238617815|gb|GG669606.1| GENE 110 120418 - 120537 80 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKGNNMKKFVVISVIAILVVTILMLIIGLFYFYAMPTQK >gi|238617815|gb|GG669606.1| GENE 111 121280 - 121453 87 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509582|ref|ZP_03939631.1| ## NR: gi|227509582|ref|ZP_03939631.1| hypothetical protein HMPREF0496_1745 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1745 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 57 1 57 57 84 100.0 2e-15 MQELLTRAKLNRLILYVKEKALIMNAMSSALKLQGVDIIAKHHSAETYVCISILFII >gi|238617815|gb|GG669606.1| GENE 112 121570 - 121794 186 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509583|ref|ZP_03939632.1| ## NR: gi|227509583|ref|ZP_03939632.1| hypothetical protein HMPREF0496_1746 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1746 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 74 1 74 74 92 100.0 8e-18 MILTGKIQLIIGFILLILGTFLAKYQGMGLNISQRGHAFEITGSGIGADLVLILAMVFLI IGFGLTMTSKRTRH >gi|238617815|gb|GG669606.1| GENE 113 121949 - 123763 1338 604 aa, chain + ## HITS:1 COG:L58914_2 KEGG:ns NR:ns ## COG: L58914_2 COG0584 # Protein_GI_number: 15673979 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 347 586 1 240 249 285 59.0 2e-76 MKGKPLLRQAFKTFFKNWGAYTILVIVINFLMLGIVVPLTTFSTSLILKLNGVPYLSYTN VVWLLTKRPAAVGELLVLLIIILALIFWQFAFLMFGIQNIAERQNQRLPRVALTALKNLG HLRAGSFLFFLGYFILVLPLSDIYLNSPLLSKVQLPAFIFETIDQSWWLMGLVALFYLLL FYLGIRLVQVLPLMILNRQPGFAAAKKSWQMTHHNGWRYLWRMMVLGTISFLTTTLLSGL LYLAQLYFDQKSNLVAFSGAVINMGLLSIWQYIIGAFSLVVFMLVLIFNLDDRGINQPVG TVVSRPTRHRYRRRIFAAILVLLFLSLQMTFNAIYLQGALLTRPLTISHRGVDNGNGVQN TIPALNKTSREKPDYVEMDIHETKDHQFVLMHDENLKNLAGVNKAPHQLTLKQLTKLKVH ENGHTAHIASFDQYLTAAEHDHQKLLVEIKTTKYDSANMLALFIKRYENRLLRDHDRIHS LDYHVITGLKKRASKLFVSYILPFNFSFPETKANAYTMEETTLNQDFVNEAHARKQQVFA WTVDDDDDMTRMMFLNVDGIITDDLHELQVNIETTFDHPSYAQRLLIYSNELQDASDSAG MPQN >gi|238617815|gb|GG669606.1| GENE 114 123916 - 125661 1673 581 aa, chain - ## HITS:1 COG:SPy1224 KEGG:ns NR:ns ## COG: SPy1224 COG1109 # Protein_GI_number: 15675188 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 9 566 7 562 572 629 55.0 1e-180 MNDNIEHAYQEWSKQPNLPENIVLDLKQLKNDPDKQEDAFGTFLSFGTAGMRGIMGAGTN RMNIYTVRQAAEGLASFMDTLDEATRKRGVAISFDSRYHSKEFAHESAKVLGYHDIPTFV FDDIRPTPELSFAVRHLHTYAGIMITASHNPKQYNGFKIYGEDGGQMPPKESDLITSYIR KNSDLFAIHVKPEQALREAKIMNLIGEDVDIDYLDNVKTVNIDHNLINTVGKDMKFVYSP LHGTGKVIARRALEEAGFSNYVVVPEQTIADPEFPTTPFPNPEFPQAFDLARKLGKKVSA DVLIASDPDADRLGAAVRQPDGSYQLLSGNQIASVLLNYILSAQKKAGSLPDNGTIVKSI VSTDLAVKIAADYGVATNNVLTGFKFIAEAIHHYETKHDHTFLFGFEESFGYLIKPFVRD KDAIQTVLLLAEVAAYYKSQGKTLYDGVQEMFKKYGYYAEKTIAKEFDGLDGKDKMAHIM SELRDNPLTEFNGHKVISHADYASSTLTDRDGQQKPIDLPKSNVLKYWLDDETWLAVRPS GTEPKVKFYLEVVDKNQEAVDAKLASDVDALDKVIEQLVKN >gi|238617815|gb|GG669606.1| GENE 115 125857 - 126852 783 331 aa, chain + ## HITS:1 COG:SP1854 KEGG:ns NR:ns ## COG: SP1854 COG1609 # Protein_GI_number: 15901682 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 331 1 332 335 276 43.0 3e-74 MATIKDIAKKAGVSITTVSRVLNYDKTLSVSDTTRKKIFRVAEDLAYTKKKKAGNIKDNI AIVQWYTEQQELDDLYYLSIRMGAEKRAERLHYKVHRFFANDSLSKIKDVKAIVAIGKFS DAQIKAMLKVTANVIFVDFDTLAKGYDCVVTDFDNSTESVLTYFIESGLKRIGMLSGVEY SSDHKLKIVDPRFDVFKDYLENQSLYDPANVFVGDFTMQSAFDLVNNALKTNRKDFPNAL YVANDAMAVGALKAFHENKVNVPEDVSVVSFNDTAVAKYVIPSLSSVKVDTGKMGEVAVS LVDTIEDDDDDHHTPQKVIVGNRLIKRESSL >gi|238617815|gb|GG669606.1| GENE 116 127176 - 130022 2063 948 aa, chain + ## HITS:1 COG:BS_ydgH KEGG:ns NR:ns ## COG: BS_ydgH COG2409 # Protein_GI_number: 16077632 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Bacillus subtilis # 13 929 11 873 885 376 27.0 1e-103 MNKFFKKYIGVIIAWVVVAIAAIFMMPNSFNLVASHGQTSLPKSAQSQVANTLKNNWGPK LSHTRQVLVVFSNGKAKLNDIQRNQINTTLTTLENKKDQFDIKNIVKPSVDSAAAVSQPS NAQSTAAAPSSSQSSAASSGSDAMLNNDPSVSAELNSKDGTTMIAQLNVGKRDLTVRQMD TKLKAAVRTASVKTYITSPDSLINDTQHATEAGLGKTEIIAIVIILLVLILLFRSLLIPL VSLISTGIAYIISLAIVLNLVSRYHFPFSNFTQISMLILLLGLGTDFSILLINEFKKQLR AGKDQLEATLAARRNAGKTILISSLTLIVLFSLLGFANYSLYESLVGVAIGILVLLLVLM SFTPFFLFFMGETIFWPSSNLEAHNYSRSWGFLSTKSAAHPLIALIIALIVATPFVFLNQ KHLNHNDAAEITLKYPSKKGYQIVNQHYANGMNAPVSIYIKSDHSLRDQTDLQQIETITR PLRDQKGIHSVNSATEPHGQPLKQLYVNQQLNTLTGDNDAVSSGMSDTSKKLKSTSIQTD GLDSVTGDAQSITSMVSTIQNEFNNSGVFATPAQMVDELQQKLRSEHRRRLTSMQRTVVT EALSRALNDQQQQTQMNSALSGIGLKTDSINSSTNSFKSELQNVQNQVRGYASTLDNLNN SLTNSNNFLKALAKSSVGNTIYIPDNVINADYFKTLIGEYLSTNEKTTRLDVVLNATPGS KKSIELVQDLENQVNYDLRGTQLKGATVAVGGYNSMVVDNQQAARTSFKRVAILLSIAAA LILMIVAGSILQPVYLVGSLGITYLMSLGFTKWFSAQFLGQKWLTANMPFLTFMMLLAFG VDYSIYLLMKYKQTDGKGKSAERMINASILIGTVVIFAIVVISVIFASLMSSGVLTLIQV AIAVIFGLIIFGIVVPSIMPGLMRLTYEGFNFKQLRFRHRRTDSKSEK >gi|238617815|gb|GG669606.1| GENE 117 130136 - 130975 462 279 aa, chain - ## HITS:1 COG:SP1112 KEGG:ns NR:ns ## COG: SP1112 COG1307 # Protein_GI_number: 15900979 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 274 1 273 279 119 26.0 5e-27 MHNIKIVTDSAAHLSPNDINHYHITVMNSPILINGKVFGYVNKISSEKFMQMFDDDGRAP IIGEISVEALTHTYDELGADGSQILSIHLSDTLSNTYKNAKSAAAKSTSQVTVINSRVTA AGLAYQVMTAAEAIAKGQRMIDVLASMEQVRDKTKIFFSAPNNSQLVNRRVIGKIRGTIE KRLNVSYVIEFKNNDFSFVTRSRQDELVNQFWHDQLTIMHHEPIVQLSILHSGNPDRANF LYQMLSKEFPFVPISKIPTNPEMACFIGNEATGVTYLLG >gi|238617815|gb|GG669606.1| GENE 118 131074 - 131400 393 108 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2075 NR:ns ## KEGG: Lbuc_2075 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 103 1 103 104 161 75.0 8e-39 MKGKYEVNQYIGAPLETDDSGHYKIKYDENGHFKLHSWRTGKHTKGKFKKLGQIFMTENN MMVVIVKAIPVAFKDRHTFTPLQRFTTEFVSDSVLNEAQSELKDTKTA >gi|238617815|gb|GG669606.1| GENE 119 131444 - 131677 286 77 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2070 NR:ns ## KEGG: Lbuc_2070 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 5 77 1 73 73 89 79.0 5e-17 MAEDIEEEPGAESPLLNKKMSEAFDWSDSKLPVRDALWDYYMENNDHDTMKTGKDMEKYM DMSSDDLKAEAEKLLKK >gi|238617815|gb|GG669606.1| GENE 120 131763 - 132140 373 125 aa, chain - ## HITS:1 COG:PAB0559 KEGG:ns NR:ns ## COG: PAB0559 COG0509 # Protein_GI_number: 14521036 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Pyrococcus abyssi # 22 123 14 121 144 60 29.0 9e-10 MAKISFWMRIKNFFTGKKQPTLSDVQVKDGIWYAKQSDGNYLLGIDESVYQLMGKITFAD FPTQLKDIQVDDDLLDIEGDKSVETLKSPIAGTVIEQNADIGKNIDTLNEPNPQVNWIVK VKPLS >gi|238617815|gb|GG669606.1| GENE 121 132286 - 133305 902 339 aa, chain + ## HITS:1 COG:lin0931 KEGG:ns NR:ns ## COG: lin0931 COG0095 # Protein_GI_number: 16800002 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Listeria innocua # 1 333 1 328 331 201 35.0 2e-51 MYLIDISRNGQPSYDARVNQSLDNYFVNDLKLPGHGLMFYINKPSVIIGRNQNVWAEVDV DYLHEHDIELVRRTSGGGAVYHDMGNFIFENILVDDVSDFGDYGHFAEPVLKALQKLGID VKMKPNSSDLILDGKKWSGMTMFKSGKGIAAGGTIMYDLNIENAKKVLTENQIEKQKRLG VLSKRSPIVNLKDYLPDGMTMAEFRAYLLKEMFQVKSLDDIETYHMTDEDWKKADQRLAE TYGTDEWNFGHNPGYYDYQDQLFAAGKMGINWTITDGKMVHLKFNPFFKVDGDLNEVEQY LIGRKMSSRTIKKAIKRGNINNIDNDALAEFLDKSFEEK >gi|238617815|gb|GG669606.1| GENE 122 133383 - 134366 834 327 aa, chain - ## HITS:1 COG:BS_yocS KEGG:ns NR:ns ## COG: BS_yocS COG0385 # Protein_GI_number: 16078995 # Func_class: R General function prediction only # Function: Predicted Na+-dependent transporter # Organism: Bacillus subtilis # 1 324 1 319 321 252 44.0 7e-67 MQTVSKIGNWMSKWFTLLVILWAAVNYFLPQASLWIAPNTSYLLGIILFGMGLTLSKDDF ARIFKRPVPVILGTVAHYVIMPFIAFLLCQIFHLTGATAVGVILVGSCPSGTSSSVMAYL AKGDVALDVSIEALSTLLAPIMLPLMLQFYAGRYVAIPTTQLFLSTLKIVVIPIILGVVV HTLFSKQAAKVNMILPLISQLAILAIVGAVFAANHDDLFTAQTALVIPVVMLHNLSGYAL GYLFGHLIRLHQPQRKAITFEVGMQDSSLGATLAMKYFVPAAAIPSTIFSIWHNVSGSVL SSWWRQHTTESVKESIRATASNNVPNN >gi|238617815|gb|GG669606.1| GENE 123 134426 - 136168 1806 580 aa, chain - ## HITS:1 COG:SA1858 KEGG:ns NR:ns ## COG: SA1858 COG0129 # Protein_GI_number: 15927628 # Func_class: E Amino acid transport and metabolism; G Carbohydrate transport and metabolism # Function: Dihydroxyacid dehydratase/phosphogluconate dehydratase # Organism: Staphylococcus aureus N315 # 17 574 2 556 562 803 70.0 0 MANTLDFNAEGEGIHKRSDKIKVGVDEAPSKSLLYATGRVKNEHDMKKPFIAICNSYIEI VPGHIHLRALADVAKRAIREAGGIPFEFNTIGVDDGIAMGHVGMRYSLPSREIIADSAET VINAHWFDGVLFMPNCDKITPGMLMAAARTNVPSVFVSGGPMRAGVDPKGRATTLSTMFE AVGAFKSGKLSKKNLLEYEKNACPGCGSCAGMFTANSMNSLMEALGVALPYNGTALADSE ERKELVRKAAKQVMYMVKNDIKPRDLMTKEAFDDAYALDMAMGGSTNTILHGLAIAHEAG IKYNLDDINKISRKVPYLAKIAPSSHWTMQDVHAAGGIPAILNELIEKGGILHPDRMTVT GKTLRENVEGAKTKNPEVIHTVDNAYSNVGGLSVLHGNLAQDGAVIKVGGVDPDIRDKGK FVGKAICYDSHDEAVHGIDSGEVQPGHVVVIRFEGPKGGPGMPEMLNPTSSIVGRGLGRD VGLITDGRFSGATRGIAVGHISPEAAEGGNIALVKNGDTITIDLKNHDISVDVSDEELAE RRTHLPKFEPKVRSGYLARYQALVTSANTGGVMKGYDELF >gi|238617815|gb|GG669606.1| GENE 124 136168 - 136320 65 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSPSNQAGGIGGFQAKSCSTQLLAFILSLYQVKNQILVSNTPLHIREDDS >gi|238617815|gb|GG669606.1| GENE 125 136635 - 137903 974 422 aa, chain - ## HITS:1 COG:SP0450 KEGG:ns NR:ns ## COG: SP0450 COG1171 # Protein_GI_number: 15900367 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Streptococcus pneumoniae TIGR4 # 8 422 2 416 416 507 58.0 1e-143 MQTRTVKLTETDVKNAYQVLKPIVKHTALEYSRYLSDRYHANVYLKREDQQLVRSFKLRG AYYAISQTPEGTRKAGVVCASAGNHAQGVAWTCNKMKIPATIFMPTTTPAQKVNQVRYFG GDYATIKLIGDTFDESANAALTFCQDNGQTFIAPFDNLNTMAGQGSIAVEIFEDAKKQGL TIDSLFAAIGGGGLLSGISTYAKYTSPNTEIIGVEPNGAASMKAAFDAGKPVELEALDAF VDGAAVRKVGELTYATCRANVDRLCQVPEGQVCNTILDLYSKTAIVAEPAGALSVAALEA NKDRLVGKTVVCVISGGNNDINRMQEIEERSLLYNQQQHYFIVNFAQRAGALREFVSHVL NPDDDITKFEYTKKVNSTMGPCLIGIRLGNVNNLDQLLKRIKQFDPHYINLQENKTLYRM LV >gi|238617815|gb|GG669606.1| GENE 126 137995 - 138714 511 239 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509596|ref|ZP_03939645.1| ## NR: gi|227509596|ref|ZP_03939645.1| hypothetical protein HMPREF0496_1759 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1759 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 239 4 242 242 461 100.0 1e-128 MTTSIIPAAANAPMLKYFESQGFNELYIDKDSVENQLMGGDTNRVLSLSDYAQYLRCMRN ATSAHLLADTSFGGDDATNWADTADELVRCGANTILISDYQSKTTSHQPNLLSDEDFEAK IRTMKTELTDTNTNAIVNLGGFSVYGLEGLTTRIDIARSQNIAKISISNVTAKDLSIIGA IMEPNQEIGLAIDNPKMTFGSAQQVNPAFVLDTYHPKKATQQWVQKAGPSVVLRLYMGN >gi|238617815|gb|GG669606.1| GENE 127 139118 - 139291 62 57 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRQKVMYHHVKKLKLSLDLFQKASIVNRQELNFAKFSHESYRNLILKNNFTSVRSRL >gi|238617815|gb|GG669606.1| GENE 128 139473 - 141176 1529 567 aa, chain + ## HITS:1 COG:SA1859 KEGG:ns NR:ns ## COG: SA1859 COG0028 # Protein_GI_number: 15927629 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Staphylococcus aureus N315 # 14 567 36 589 589 561 51.0 1e-160 MLAEESKPATATETGAEILVDALAEQNVDFLFGYPGGAVLPLYDALYTKSFSNVLTRHEQ GAVHAAEGYAKTTGKTGVVCVTSGPGAGNVVTGIADAQMDSVPLVVFTGQVTRSAIGTNA FQELDIVSVTKPITKANFQVQDVNDLHSVVTKAFEIAQSGRKGPVLVDLPKDVTSESAIF EQNAPTKRAKQPQQLGKTQEATIEAALHALSSASKPVVIVGAGVAAAGATKAFNQFVHDW NIPVVATLLGLGILPSKDPLFLGMGGMHGSYAANMALTESDYILNIGSRFDDRMVPKASD FADNKTIVHIDIDTHELNKILKADYSIEADAKAALTEMNRSTAAKTQTPAWNQLVEDRKD ENPEDAKPAAGQFNPHEVIEAVGKATNGDAIVVTDVGQHQMWAAQSYPFKHARQLVTSGG LGTMGYGLPAAIGAKLGNRDRDVVLFVGDGGFQMTSEELEVLAAEDLNVKIFLLNNHALG MIRQWQDAFYSNHRSKSLFDHQPDFKKLADAYDINYQQLNPEEPLEQQLNDVFDDPKSTL VEVQVPVDEQVYPMVAPGHKNNDMIGF >gi|238617815|gb|GG669606.1| GENE 129 141285 - 142325 943 346 aa, chain + ## HITS:1 COG:SP0447 KEGG:ns NR:ns ## COG: SP0447 COG0059 # Protein_GI_number: 15900364 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Ketol-acid reductoisomerase # Organism: Streptococcus pneumoniae TIGR4 # 5 332 1 328 336 389 63.0 1e-108 MSVEMLYDKDVTTNYLQGKKIAFIGYGSQGHAQANNLRDSGYDVIVGVRPGQSFENAKID GFDVYTPAEAARRADWIQMLTPDEVMGDVYKNEIAPNLEEGNVLGFSHGFNIHYKEIVPP ANVDVVMMAPKGPGNLCRRTYVEGSGVPALYGYFQDYSGHAEDLSKEFAKGNGAARAGLL KTTFKEETEEDLFGEQNVLMGGVTALIETGYEVLTEAGYSPQLAYFEVDHEMKLICDLIY EGGFNKMYADCSNTSEYGSYVVGPKVVGKESKQAMKDALKRIQDGSFAKEFMDDYRNGFK KLYKMRERSANSLLSRVGADLRDHMSFVGEADKYSTPTEEKAEAEK >gi|238617815|gb|GG669606.1| GENE 130 142553 - 143335 210 260 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 9 240 9 232 311 85 29 4e-15 MERILRFDDVSVTRGKKKILHHINWQVNQGENWAILGLNGAGKTTMLKMIHGDLWPTSGN LEVLGGVFGHINIPELKTKIGWVSNALQDQLHTGDLVDFIVLSGKFASIGIYQEFSQADL DEARQTLIDMGGQKLLGKQYAVLSQGERQLVLIARAMMAHPKLLILDEPCNGLDLFAREE LLKRVAQISRMPNRPVLLLVSHYTEELLPCFNNVLLLRQGQVIQAGKRKDVLNETSLSAF YSKPIQTVTISGNRLAVYPK >gi|238617815|gb|GG669606.1| GENE 131 143720 - 152146 6023 2808 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2059 NR:ns ## KEGG: Lbuc_2059 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain-containing protein # Organism: L.buchneri # Pathway: not_defined # 466 2530 9 2048 2180 883 33.0 0 MWIKKRGVIIQVIGVLTLLIGNFFTAGQALADAVSTDEIAVENAKFVNQHQQFVSNSKVG DRAQLSFDLTVGAISKSGAVTFGYDEESLTIKKKRYKYTNGQTVVVVDVDGKDSTIHWRN AVGRTNMEVKLPVKFRRAMNQHRLTVAVDHKLVKLPFLTIVSKENKPKQNQAGSSSGNLK SEDKVNNMLQQERMKETQKQVQKAQAQSQESQSKGSESTTDESEKSSGSISQSNQTKSQS YLEEKRKNDQKKAAVNNKKAIAENDDNGGKVAESSSSVVDNAATTPGSSKAAKSVAIDRD VTTTSEALKQADAEDAGDADGDVPSKGANIRNEVKNAQIFAARTGQSLNDKIDTQFFSKI TLGMDNQTIDIPAKLGDGQTVTIPEQIHGSSKNVITWHWDTTSIEEMNSPEFEIEDGDYY DFVLSGFKFDYDGKDKVTQEIVADGVKIGEFTVSPHKNGAGTTVSDKHDIRITFLTAKAP GHSTISYGASLTTTFNKEASEISFGEIAGEDAKIEVEKATISLKKDGDFYNDEGVVDYNK LHWKSTFKVEKDGAAADKVVLTDTFGEGYQYGIDKDPADYIIHVTGNKGTTAKQVKLSDI SHASSGRQIDFTFEAAELVKKGILEEGEKIESIVLETIGTVTRAAQNEFVNTIQVTDIQI GGHQITSAQADASITRAKTQLDKKATVQSGGNVRYEVRFTVDEDTKNFTMTDRLGSEKFA FAAVGSDSYELKIKGEGGNVYQDWVEATEISGEEGSPATLTIKFKPNIPQGTHYLYYDII PKDEATSTDYKDLKNFVQWDGQEKYSTIQNPRIDTKQSLGADWSKMTTDWGINVNQINRK VTGDFVITEPHGDVDYLDFGKFYHELSSNGYQDAKNYLRFFENNVSGKEYQYEYKNGKFY WEGTSDEAFEIEFNDTTKAIKLTVKKLPGENQTNYRFGIGYYNVPLDKEAIAKKPPFSFV NRAQVSYNGGDNIVESWRGVPAFMRQHLTKTGRLSENFHEKNGRHIDWKVSFNHMGYLGE GEALAKLLTEDGIDITDIVGTDQMTGNDDVSNDKTLQDISNLLGSLKISLAKLANDGSGY GEAELLEKNDYKIVEDKDESENENHKVTFNLKLTESGLAKYRAGKTVFVLNFQAQVPSLD FSDDKHEHFKKWLFRNKITLSGLGQYGDENGKRTTEATVSYTDNGHLLDKSGQSMDISPA PEERTLPAIKWQVVLNGDGRNIDSKQIKVTDSIANQTHHHLITHDPTYQLTLFKANRSIG DDGKVTYTAGDKIQRDSYKLDYSDSLDNMTITFDKDVIDGQPILVQYYTVRETSTANSSF ENKVTLEYGDEKIIEEEKVKSDTSAWGSYERFAVNVVKLDAKTGKRLEGVMFMLERYDKA TQKWVPAQYLDGNNEKQDMVETTDEYGMASFNNLGDKAVYRIVETQGLSGYYANYTSPEF RMSDLTNGQTVHVLKVENPTMNELIIKKNVQSSDPASRNDQFKFEVQFTDKDGKIDESVN GRFDVELNGEMQSTQVTFIEGVSQGLPGIKNGEILKIKGLPVNAYYRVIETNGDGYKTTH SIRQLNVTHPAGDGSKKTDVLAFDDSGSPGIVTFTNTLDSGEFEFSKAIRGENKDRDKDR EFKFELQVYKDGKLYEEFNSLVSGIKHNNGQDTDVQFRFENGKSTQLLGDKDILLKDGES YRKIKLPGNVQLVVREKHDDVYSKTFYKLNNGDEKAVEVDHDGFHVVGPISIGSHVKFIN EHKENQFEFEKIVSGRDTNDTFTFDVTAGNEETRNAVKSNDYVVAIVNAATGESVHGHLT VKIVFNDQGKATGLRFGDQPNVQPINLQNNQKLIVKGLPTDAGQFKIKEIDYQKGDWTVY NHIDGEFERAGDDVTLNLNREKGRNSVMFRNTPPDCVPFTLKKVASGLDIPKDKAFEFDL TITNPNSEWGDKKTFKAIKSGETDEQEIVFSKAAGNVYHAKVSLKVGQTITFFMIKGLKM TITEDIGDDYHVSHQYGGDNWNDGKEAQVTTGSADDCGTNCLPPLVFKNHRPGTSLEIRK VLKGALSETDFETEFEFKLNVVDKEDRKLDGEFDITIIDRENHKQSGTVTLVDGNIKMIT LDKGKLSTLKLRGDERAVITGLPDGAKVKVIETSQADFKTSHAINTNAEVTGNETINWTL HEDEKTVVQFMNEKLAGGLKITKRVIGDQLTPADRDRQFEFYVTTTPELADKAYQAVKRD QHGNKENLRIKFTDGRSEQVLLKDGESMAFQGLPTNVKYSVREIIAQDMQADYNVSYRID KGAEHQKEVTEYLGLEHDKVGHVTFYNAKNSPETTNLEIHKKVDGDGISNLDLQRSFSFR IKSDIALNETFTATMRSQNGHMEEVGLEFKNGIADLTLKSSEYLSVMGLPIDYHYQVTET KVADFSTSYQVNGGQITAGNATESFKMVNGKNGLVNFVNHKEKSETASMEIAKRLAGTGL SEADKNRNFKFVIYTNAYGDFKATKIARNGHSEEVTVSIRNGQSTPIYLKGDESILIKDL PISSTYQIGEAFAEGFAASYQVNSAGKYDGMMTDVVKLVKDQAGKVTFTNTKDMVPAEGT LIIDKFVNNLGNPKQSFTFNIEMKDGAGGYLNGIFQVEKVKNGVSEIGQIALVDGKGTFQ LTHGQTIKLSMPLGTAYNISEQDYQSMGYVTTTTKNRVAMPSTTVTGTVTAGTDHLIYHN DIKDDLEGTAPLPGQEDSDDGSATLEGAQGLPGNTSDNTSGADGISGSNGVSGSGSSTDA PSGIPSQGYTGKAALPQTGEDINQQLIILGLVLLMAAIGGMVYYKKRV >gi|238617815|gb|GG669606.1| GENE 132 152618 - 153643 923 341 aa, chain + ## HITS:1 COG:STM2573 KEGG:ns NR:ns ## COG: STM2573 COG1893 # Protein_GI_number: 16765893 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Salmonella typhimurium LT2 # 1 309 1 303 305 169 31.0 5e-42 MKYTVLGAGAMGLRYGVLLQEAGFDVDFVDTWEDQVEKIRQQKGVYVSRDGQNRHLVPVN VYYPEEYKGDPDVLIVFTKQYQLDDFLKRSARFFNDKQYVVTCMNGMGHIEKLNQYFPKE RVLGGTALIGTVLNKAGDVDFIGPKGAGSMNVANETEKPDQMTHQIVDEFTQAGLNPNLT TNFLGTLMAKVIFNSVINTLCTMFKIRMGEYIQSPVAKKLGVQLIDEAFDVCERAGITLL NTREEEWQTVSYVSRVSNPLHFPSMYQDISKNRQTEVDYINGYIYDLGLKYHYEAKTHDF LRNLVHLAEFSGTFDVDGYIQSVLDEDKKQAAKQATVQAKA >gi|238617815|gb|GG669606.1| GENE 133 153719 - 154597 596 292 aa, chain + ## HITS:1 COG:SA2374 KEGG:ns NR:ns ## COG: SA2374 COG3001 # Protein_GI_number: 15928167 # Func_class: G Carbohydrate transport and metabolism # Function: Fructosamine-3-kinase # Organism: Staphylococcus aureus N315 # 10 284 1 275 288 223 40.0 2e-58 MRIGKGTHILDKALLATLPIGPIISTQPVGGGDVNSAYKLVGQNGKKYFLLLHPSDTKDF YKQEIVGLKLLTKTAMVPSVLANGTWESNAYLLLNYIDSQSFGDQYALGRVIAQMHKRTS ANGQFGFNLDDPEGKSDHGGTWYPDWPSFFINERLEYRKKIILKRHLWTGSMEAMYQKCL VRFKQLMRTHDSKPSLLHGDFWSGNFMFDENGQPVIIDPAVFYGDREFDIGVSQVFAGFD PEFYQGYQDEYPLDEGYQNRLPFYQLYYLMLHLGKFGIGYQESVVRLLRELQ >gi|238617815|gb|GG669606.1| GENE 134 154660 - 156438 1313 592 aa, chain - ## HITS:1 COG:L123536 KEGG:ns NR:ns ## COG: L123536 COG1073 # Protein_GI_number: 15672103 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Lactococcus lactis # 322 569 83 310 311 119 33.0 2e-26 MEINRSTACRKVILITSFLATLILGFLVVTDHTYADVQSQTTCSETTSQSSSSEQTIVFK ESASNSDNVDSSTDTTLNNTSDSQSNNQNATTSNQSSTSGATTPAPSENTADTSQPTSSV NGSSTPESTSSSSESANASSSTNESQVNNPSSQDVTGTASSKDQGQTNTDSTSNDVDSTT GSSPVTDQSSSTDNTTTGGTDKDQITVTGTNSSTDPAIKQSSSNPLLNWLTNMTSAGAAA LIYPFITSRQGSHLLSEFRTLLSPTRYNIDQTWSDLDQKYNPDYTKQFYTDAQNWYDNEV KKETLTVPFADGSGNASATYIAHPGSSKTIIYGQGWTTEPEWMGYISKIFYDMGYNVLMP YTRGQNSSDGEFLTFGYKDKADWINWINKIDQLNGPNSEVVLYGQSLGADDALEAGAQKN LPSSVKAVIADCGYSTIPSLLYSLYTGAANKLNGYTSKIGWNLNGSIPLVPYDQFLNNLN NVNHLFQGFNLDDASGLTAVQNSTLPTLFIATADDTFIPDSETKALYNASISKDKQLWIL DGNVGGHASANNAVLAYTQHIQDFLNAVDNGQTSSTTSTNQLTVDDNQAVAA >gi|238617815|gb|GG669606.1| GENE 135 156625 - 156828 280 67 aa, chain - ## HITS:1 COG:SPy2077 KEGG:ns NR:ns ## COG: SPy2077 COG1278 # Protein_GI_number: 15675836 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Streptococcus pyogenes M1 GAS # 1 63 1 64 67 88 67.0 2e-18 MKQGTVKWFNADKGYGFITTDDGDVFVHFSAINKDGFKSLDEGQHVTLDVEDSDRGPQAA NVTVVDD >gi|238617815|gb|GG669606.1| GENE 136 157023 - 159053 1515 676 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 44 645 166 788 815 588 49 1e-166 MNNDIFDDIFNDPFFKQQLPNMSGQQQMRQQPVQVQERRPQNKTTLLDQYGTDLTKMAKD GKLDPVIGRDKEIEQMEEVLSRRTKNNPVLIGEAGVGKTAVVEGLAQKIVDGDVSEKLLN KRIISVDVVSLVQGTGIRGQFEERMKKLIDEVSKNKDVILFIDEIHQIIGAGSTGEGDKM DAGNILKPKLARGDFQLIGATTSNEYRDIEKDQALARRFQPIMVNEPSEQDTLTIIKGLK PKYERFHHVRYTDDALKAAVSFSNRYIQDRMNPDKAIDLIDQAGAKVAMGSSITKDKSTL QQEAEKLEKSKKDASSNEEYEKAAGLRDKLDKVEAQIKAIDNGTKVEVPEVTADVIKKVV ERITGVPVTDVNKNQVSQLNSLNKDLKKEVIGQNKAIDAISAAIKRSRVGFTEGNRPIGS FLFVGPTGVGKTQTAKALAKELFGTTKAMFRYDMSEYMDKISASKLIGSAPGYVGYEEGG RLTEQVRRHPYSLILLDEIEKAHPDVLNLLLQILDDGRLSDAQGRTVDFSNTVIIMTSNA GQENSSDKKDVIDRLKPYFKLEFLNRIDDIIQFNSLTKADLLQILDLMLNDLDQLVNKSR GIHFTITDDAKNQLVNMGYSKELGARPMHRVITKEITDKLTNSFLAHPEEKNFTVNAKDN QIEVTPTTGKEATISK >gi|238617815|gb|GG669606.1| GENE 137 159307 - 159726 367 139 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2047 NR:ns ## KEGG: Lbuc_2047 # Name: not_defined # Def: OsmC family protein # Organism: L.buchneri # Pathway: not_defined # 1 138 1 138 140 219 78.0 3e-56 MATYTIHTTYRNIGAQTMNQAGDHQFIADEPTIFRGTDAGPNPVQYLLGAVGACLGASAA SLVNRPKSTIKIKKFDVLVTGETERFADKSSRVSKINVKLTCETNLNQEENRKFIEDTIH LCTVHNTLKDAVEFTFDIN >gi|238617815|gb|GG669606.1| GENE 138 159807 - 160502 548 231 aa, chain + ## HITS:1 COG:BS_yrkL KEGG:ns NR:ns ## COG: BS_yrkL COG2249 # Protein_GI_number: 16079700 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Bacillus subtilis # 1 166 1 171 174 109 42.0 4e-24 MKTLVLVSHPKATASATQTFLKTSADYLDNVTWRSIDDLYSATQINIVDEQKRLRAFDRI IFQFPMYWYTSPASLKQYMDDVFTRKFIVAKHWLKNKELGLVITLGDSLADFQAGGRERF TISELMKPFEAFANKAGMVYLKSFIIDQFGYLDVLKKQELLVGYLQYLSAPMPLSLEKRE KWLITRLKQLEAGKTAQQRELLDLIIDSIDSRQDQIDDLKLNIKMIRDQEE >gi|238617815|gb|GG669606.1| GENE 139 160505 - 160684 228 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509609|ref|ZP_03939658.1| ## NR: gi|227509609|ref|ZP_03939658.1| hypothetical protein HMPREF0496_1772 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0497_1677 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0497_1677 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0496_1772 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 59 1 59 59 86 100.0 6e-16 MGDTQDWAVQQLAEIAENEQSFINRSILKAAQDLIIEQTKRIDQGQQEIDGRIWSPDKW >gi|238617815|gb|GG669606.1| GENE 140 160687 - 161058 295 123 aa, chain - ## HITS:1 COG:SA2495 KEGG:ns NR:ns ## COG: SA2495 COG1396 # Protein_GI_number: 15928290 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 2 65 1 64 189 72 51.0 3e-13 MLQFSKQLKKYRAANNLSQDDLAKKLFVSRQAISKWEQGDATPDLNNLVKLAEIFNISLD TLVLGASETKSTVDQNQYTFDPTSGLYKRRYGQMNFWDFLARFWWLIFPIGGFIMAIIET LTP >gi|238617815|gb|GG669606.1| GENE 141 161293 - 162090 575 265 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1936 NR:ns ## KEGG: Lbuc_1936 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 155 261 189 297 301 76 40.0 1e-12 MSKLKEFLVESAIVLLFSMVFVTVVKADGSQGATYQFYKANQTFQIKMYGTNQPVTIKKG TVVKAMKYTEVQNVLPKSDAGKSMAQINFKLLSYKARQTWPKPHPGGNWTRSALKPEGDY LTQVSMPKGLLVNDNLSMEEDYGILSRSYHFGKGDRVVATTDGYLEYYARDYKNDHFVSK PTSYAKINKISIVGNKKYFYYRHHIKGLLDKKVHQSGQQKYRLTEINLKRDVKYSPADSD GETFVYSAYKLGNRKYYTSAGSLGG >gi|238617815|gb|GG669606.1| GENE 142 162223 - 163170 796 315 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509612|ref|ZP_03939661.1| ## NR: gi|227509612|ref|ZP_03939661.1| hypothetical protein HMPREF0496_1775 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1775 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 315 37 351 351 588 100.0 1e-166 MWNASHSKKILNLKNLPRSQWYRAKSVILKHGSSNRVYYKLVLGGHYKFWQGYVRRSQLA KGYGPNYSGHARVGYYKLTRALQLTGRTYHNKVVSGSLPKGTIIRAATYVSKQKTWLNIS LDGLSHQTRSKLNFMLYITSDLLYANKDLNPQAPNYLTPVSEPAYIIPAPQRDNDAKTSP NWRTDLYPGKTSEYWDQVLPILRLTTDGYVEYYAHPTFQNSYLSSNDNPTASEKITHYET SGNQTTIYYANHLDGFNDQKTGSNTDQQYKLTIENQKKVVTVNKRDANGTIFSTTSYGQF LIGGRPFHSLDYTDD >gi|238617815|gb|GG669606.1| GENE 143 163399 - 164220 721 273 aa, chain - ## HITS:1 COG:PM1261 KEGG:ns NR:ns ## COG: PM1261 COG0351 # Protein_GI_number: 15603126 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Pasteurella multocida # 6 271 2 267 273 214 43.0 1e-55 MIILANEFPQALTIAGSDSDGSAGMQADLHTFFRRHVYGTSVLTACVAGNSYGIHDSVNL PTTFIDQEFKDLADDYHIRASKTGMLSDSDLIRTVIKNYKKYDFGPLVVDPVITTKHGNM LLEQSAYQTLRDELIPMATVITPNFFEAQKLAEMDIETSVDMETAARKLKALGAKNIVLK GSHHDPNQTKVSDYILLESGKSFWLTGDFFDTDRKNGTGDSLSACIAAELAKGNSVEDAC RVAKKFVDAAIKSEIQVGHKFGPINHWAPADEL >gi|238617815|gb|GG669606.1| GENE 144 164380 - 164502 114 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRICHPNGVQGRRPISRKKDIKRNKALADLQHFLKQKPAK >gi|238617815|gb|GG669606.1| GENE 145 164636 - 165289 853 217 aa, chain + ## HITS:1 COG:lin0467 KEGG:ns NR:ns ## COG: lin0467 COG3619 # Protein_GI_number: 16799543 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 25 215 24 211 221 95 30.0 7e-20 MAEKEIGVYERLLSGALLAMAAGALDAYTYLEDGGVFAGLQTGNLILTGLRVGQGDYGEI TQGIVSLIMFAVGVAIIRVIQYHYPSELALRRKVVTLSYEIILFVLVSFLAGRVSILLTT GLLAMAAAAQLQEFRTMKNGPFTSLMMTGNVRTLSENVLDFVAQGDKKALRKAGDIVTII GSFFIGALLSGYLAQYFQGQTILLSAAILLVVIVVGK >gi|238617815|gb|GG669606.1| GENE 146 165345 - 166010 717 221 aa, chain - ## HITS:1 COG:lin1022 KEGG:ns NR:ns ## COG: lin1022 COG0569 # Protein_GI_number: 16800091 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Listeria innocua # 1 217 1 216 219 185 43.0 6e-47 MKSNYAVIGLGLFGSSIVNTLLENHQEVLVIDKKEESVDKFRDVATEAVVADTQNELALR QLGIGNFDNVFVAIGTDLEASIMTTLICKDLGVKHLVCKAENARHAQVLEKLGADEIIQP ERDMGERIALHVMEPKILNDLKLKGELAVVEFELTNAKFFNQSLKELNLTNRYKVSVIAI SHADEEGAAIPNQSTVVEQGDVVTVIGTRKDVQKFEDIATK >gi|238617815|gb|GG669606.1| GENE 147 166051 - 167388 1047 445 aa, chain - ## HITS:1 COG:BS_yubG KEGG:ns NR:ns ## COG: BS_yubG COG0168 # Protein_GI_number: 16080162 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Bacillus subtilis # 6 445 13 445 445 273 40.0 4e-73 MSWRGRLSLPQILTLGFLTIILVGTVLLSLPVSSKDGTATSYINAFFTATSATCVTGMTV VNTALHWSIFGKIVILILVEIGGLGFMTFAVLMFIFMRRKVDLTTQLLTQQSLNLETFAN TRSVVFLVVRLSLAIQLLGAILLFVDFYPRYGLKRGLGYSIFHSISAFCNAGFDLFDNSL VRFQNDPYILFVLTCLIISGSLGFLVWKDILLYHKDHFLSLHTKLALTTYLGLIVISFAV YLLTEGNFGENTHLNVFQRLMNTYFMSVTPRTAGFYTYPYTKISMGGMFFTMILMLIGGT PGSTAGGIKTTTVGILLIRVWATLRGKRDATFMGRRFTNDNISRSLTLVFLVFVVLSIAT LVLTITETVPKHFGIEYIIFDVVSAFGTTGLTLGLTPHLTIIGKLIFAVLMFMGRVGVFT VMYSLLTSKRPEDAFRYPKENVMIG >gi|238617815|gb|GG669606.1| GENE 148 167535 - 168776 1117 413 aa, chain + ## HITS:1 COG:STM3334 KEGG:ns NR:ns ## COG: STM3334 COG0402 # Protein_GI_number: 16766629 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Salmonella typhimurium LT2 # 3 411 8 416 426 478 55.0 1e-135 MLIKKVHIQNAQATSDVKIEDGKFVKIAPSIQASEGERVIDASDKLLLPPFVDPHVHLDA TQTAGDPEWNQTGTLFDGIRIWSERKKTLSIADVKQRAKKAIQIQVANGIQFVRSHVDVT DPNLTALKALIEVREELKDQVELQLVAFPQEGILSFPHGEELMTEAAELGADAIGGIPHF EFTREYAVKSLKFLMKLAETKNKLVDVHCDEIDDPQSRSLETLATLALESGMGDKVTASH TTAMGSYNDAYTYKLFRLLKMSHINFIANPLVNTNLGGRFDSYPKRRGMTRVKELSQDGI NVAFGEDDLKDPWYPMGNGNMLDPVEMGIHVGHLMGYNDILNSYRFVTTNAAKAMHITDH YGIEEGKPANCIIMNNDNFYNALNERSEILYSIHHGDILVQTEPKQVHNHLKI >gi|238617815|gb|GG669606.1| GENE 149 168974 - 169420 350 148 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2032 NR:ns ## KEGG: Lbuc_2032 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 131 1 131 165 208 87.0 5e-53 MTRTKATLITVEEAKALLKDRSDQINERFPRLKKQGKYILPDYRLTRKREAFKIRKHTFL QRHPRSYVAFDSENGQTLWMHNFPSLTEAIFWLDTGLKPTDTDTSTSYKQWKTQHEDDIN VLKEILRKRSQERKAAAAKRKEAKKVKK >gi|238617815|gb|GG669606.1| GENE 150 169535 - 170503 736 322 aa, chain + ## HITS:1 COG:PA1815 KEGG:ns NR:ns ## COG: PA1815 COG0328 # Protein_GI_number: 15597012 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Pseudomonas aeruginosa # 79 237 5 146 148 92 33.0 1e-18 MKYYAVRKGRQTGIFTTWDETSKQVSGFSGAEYKSFKSKSEAEGFLTGKQSIQGHQNSSK RQSKSSVAVNRPIELSFGDDIIVYTDGGSRSHGNRSGEHVKQGDKAAWAYLILIANPKQE VSDTGGEYGATNNRMEIMGLLKALTYLADHQLEEQPVSIVSDSKYVLDAVTKGWLSGWRR RGWKRSGGPLLNKELWQQIDALLQRFSNIRYHWTKGHASNEGNVFVDHLLNQTMDEMAPK ETRSTDKVALPKLKVTHPKDQKTAPKPSHHIESKKRKIRLDSKSINPEKQAPEKLSSEVE KSVHDVEESLKQLGLFDDHKDQ >gi|238617815|gb|GG669606.1| GENE 151 170497 - 171057 588 186 aa, chain - ## HITS:1 COG:lin1888 KEGG:ns NR:ns ## COG: lin1888 COG4843 # Protein_GI_number: 16800954 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 3 178 7 174 174 153 46.0 2e-37 MELAVTIFILNALYISINTFRTMLVVKGHQFLAPLVAVGEELIYVIALAIALDHIDSPLN VASYAVGFGVGIYIGIVIENKIALGYVNFQVTVQIDPENPVHAHNEELAEKLRNLGYGVT VSRAEGRSGARLVLSILAPRKADRRLMEQIKEISPDAFIMVQEPVQLSGGFWSKEVDRRY HGANNH >gi|238617815|gb|GG669606.1| GENE 152 171257 - 171697 432 146 aa, chain + ## HITS:1 COG:lin2872 KEGG:ns NR:ns ## COG: lin2872 COG2764 # Protein_GI_number: 16801932 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 5 143 3 140 147 100 40.0 9e-22 MANTKLIPYLTFENTKNALEYYKRVFGATDVTRESPTEKQAEEMSLNADVNLDNLTLQAS FKVLDQQIFAADSFLGKPVISSLISLMLEVDAHDSDAESALENLYKQVAKSEEVKVIVTF EKKSSGNKYGQVVDKYGVTWIFNAVK >gi|238617815|gb|GG669606.1| GENE 153 171819 - 172493 539 224 aa, chain + ## HITS:1 COG:lin2964 KEGG:ns NR:ns ## COG: lin2964 COG0637 # Protein_GI_number: 16802022 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Listeria innocua # 7 215 5 211 220 169 42.0 5e-42 MDDFAKIKGVLFDLNGIITDSWAYHSQSWREIAAQLGIQWSSDLEEAIKGRDRIDSLDAI LDSAGKKDQFTRQQKEALADQKNDIYQTMLDKMNPSDILPGIQSFLDELTQNNYKMIIAS ASANAPKEIQKLKLENYFPLIVDLKQIKHNKPAPDVFAKAAEMIHLPPEACIGIDDGIVG VESINAAGIVSIGVGDPQILHEADINFQSTRELTLENIRQAWSK >gi|238617815|gb|GG669606.1| GENE 154 172475 - 172843 434 122 aa, chain - ## HITS:1 COG:BMEII0787 KEGG:ns NR:ns ## COG: BMEII0787 COG3189 # Protein_GI_number: 17989132 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Brucella melitensis # 2 116 3 114 116 116 52.0 9e-27 MELKLERIYDKPQDLSGYRVLVDRLWPRGISKVNAKLDEWEKEIAPSKDLRSWFSHDPAK FPDFKKKYIDELNHNEQTQAFISSLADKLKTDNVILLYGAKDREHNQAVVLKQYLDDHLD QA >gi|238617815|gb|GG669606.1| GENE 155 172943 - 173512 344 189 aa, chain + ## HITS:1 COG:lin0928 KEGG:ns NR:ns ## COG: lin0928 COG2094 # Protein_GI_number: 16799999 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase # Organism: Listeria innocua # 1 189 22 207 207 153 42.0 2e-37 MLGMLLTYNSPKGVVGGWIVETEAYMGQKDSAAHAFKGRRTASNEPLYGPPGTVYIYSIH GRYLLDVAAQQKDIPQGVLIRAVEPFIGKEIMLENRSKSGFDLTNGPGKLMEAFGISDKK MNFEIFGDGNLDINQNRKKIPKVIETSNRVGVSNQGDWASKPLRYFVKGNPFVSGIKKRE MDLSDFGWK >gi|238617815|gb|GG669606.1| GENE 156 174059 - 174559 453 166 aa, chain - ## HITS:1 COG:BS_yutG KEGG:ns NR:ns ## COG: BS_yutG COG1267 # Protein_GI_number: 16080281 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Bacillus subtilis # 21 164 18 161 166 144 47.0 5e-35 MNNKSFKFPDTKAYNFVIEALKERGVTPDDISRIAINLQKPFIPNLSMEEVRKDTTNVLH KREVLNNAMVGLELDRLATAGLIKEPLESIIMNDSGVFGVDEGIALNIANIYGTIGITNY GYIDRDKTGVVKKLDESKSGASNTFIDDIVGAIASAVSARIAHRNN >gi|238617815|gb|GG669606.1| GENE 157 174638 - 175405 752 255 aa, chain - ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 242 13 248 252 268 56.0 7e-72 MAESGKVLAGVHLGLRNMIKPGLDTWDIEEFARKYIKDHNAYPSEMGFEGYKFATCVSVN DEVAHGIPRKGLILKDGDIVKVDLTVNKDGFESDSCWSYAVGDVSPEIKNLMDVTRKALY LGIDQAVIGNRLGDIGGAIQTYVEDEHHMGDVRELIGHGIQPKMHEEPNVPAYGVPHRGL RLKEGMTITIEPMVNTGTWEIKDRYDKADDWTYYVSADGTPSAQYEHTLAITKDGPKILT IQDPDIDEKYIYHNN >gi|238617815|gb|GG669606.1| GENE 158 175615 - 175782 232 55 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2023 NR:ns ## KEGG: Lbuc_2023 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 53 1 53 56 74 96.0 1e-12 MKLTEYLHDQLKFLNDQMSSAKKDKDETMQYLVDSKITEVKLILEALQKGIIDEA >gi|238617815|gb|GG669606.1| GENE 159 176001 - 176168 133 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509629|ref|ZP_03939678.1| ## NR: gi|227509629|ref|ZP_03939678.1| hypothetical protein HMPREF0496_1792 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1792 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 55 2 56 56 63 100.0 6e-09 MVDNIWLKWFFVLFYLVMGILLYTGQSMVVMYMMVIGMFLEALYGLVESYIKRKQ >gi|238617815|gb|GG669606.1| GENE 160 176432 - 178435 1774 667 aa, chain - ## HITS:1 COG:SP1647 KEGG:ns NR:ns ## COG: SP1647 COG3590 # Protein_GI_number: 15901483 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Streptococcus pneumoniae TIGR4 # 39 667 5 630 630 543 44.0 1e-154 MNIRQGGISLKKLIVKATEAEGGDANQPTNDSIDKSLLKDDLYQAVNGRWEKTAKIPADH SSTGGFMDLNDNIDKELMHDLDDLKAKNKDSFEAPFSEMLKLYELAQNFKKRDADGADPL KPYLEKIENISNFADLNGQLADWVKTGFPLPFGFFVEPDMKNTQVNALFANSPSLFLPDR TYYENNNPAYNQLMPVLTKTLSQLLVLADYSSNEADEIVESAKKFDAAIAPHVKSAEESA DYSKMYNPQKFSEFAKSSSHFDLTKLADGLFGKTPEQIIVTEPKYFEALDEIVNEDSFQD MKNWMLVGTIYSATGYLSEEFRQTGSTFSRALSGKKEATPQKKSAFYLATGTFGQTIGDY YAKKYFGPKAKADVEHMVRNMISVYKNRLQNNTWLGEDTRKKAIVKLNKLGLHVGYPDHI DQLEYKYKITPENEGGNLFNNMTRIGQVALADNYAKLGQPVDRTKWEMSASTVNAYYDPF KNLIVFPAAILQAPFYSLDQTSSQNYGGIGAVMAHEISHAFDNNGSLFDEMGNLNNWWTK EDHEYFTKLADKMIKEFDGIPFAGGKVNGKLTVSENIADAGGLSCANEAAKNEQDYNLYD FFINWAKVWRMKATTQYKQLLLNIDVHAPAELRANVQVKNLDDFYSTFEVKSGDGMYLKP EDRVKIW >gi|238617815|gb|GG669606.1| GENE 161 178927 - 179823 685 298 aa, chain + ## HITS:1 COG:all2088 KEGG:ns NR:ns ## COG: all2088 COG2326 # Protein_GI_number: 17229580 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Nostoc sp. PCC 7120 # 10 297 3 287 289 264 45.0 2e-70 MDNKKMFDREKSFRYNGGSNFKLSKKPTAAIDENLSKTDIKARIDSNILTLQDLQGKLYA QNRFGILIIFQGMDGSGKDSMIRHILSGVNPQGCEVTSFKVPTSIELNHDYLWRVHRHMP SRGIIGIFNRSYYEDVLVSKVHPQLILNAHIGGVTKLKQVDDDFFEGRYQDINFLEDYMT RNGFMVLKFFLHMSKDEQKNRFRRRIEMPDHNWKFSAADIKERQYWDDYVDAYETALKKT ATKQNPWYVIPSDDKWYSRLCVSDIIDHRMKELPLKYPDLDAASKEQLESALDELEKN >gi|238617815|gb|GG669606.1| GENE 162 180102 - 180326 290 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509633|ref|ZP_03939682.1| ## NR: gi|227509633|ref|ZP_03939682.1| hypothetical protein HMPREF0496_1796 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1796 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 74 16 89 89 129 100.0 8e-29 MKFNHNFYKEPVFWGALFFLAMFITMLIDKITGMYTVNWWLALLTVILATGGMLYGFLKG IYHHHDDMKNGKML >gi|238617815|gb|GG669606.1| GENE 163 180603 - 180938 412 111 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2018 NR:ns ## KEGG: Lbuc_2018 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 110 1 110 112 134 60.0 1e-30 MAKETEEQWKKSLTSKEAFQDFIKDYFSSHKEMKGHYDDSYYFEDYDIHLDSRDGLVVTL TTGSYSGQGMPIKDTEHVTIEDFRQLLLNKRFASKGVSLANAFHMAADLIA >gi|238617815|gb|GG669606.1| GENE 164 181107 - 182432 956 441 aa, chain + ## HITS:1 COG:CAC0326 KEGG:ns NR:ns ## COG: CAC0326 COG2256 # Protein_GI_number: 15893618 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Clostridium acetobutylicum # 3 433 5 433 443 536 60.0 1e-152 MKQQSLFAANDLATQPLAYRVRPQTLADFAGQQHLLGKGKVLREIIESDQLPSMIFWGPP GSGKTTLAEIIAKKTKAKFVTFSAVTSGIRDIRKLMKDAEANRDMGGKTIVFVDEIHRFN KAQQDAFLPFVEKGSITLIGATTENPSFEINAALLSRCKVFVLQPLQVTDIIQLIKHALV HPDGFAKQHVEIDGEAIRQIAEFANGDARIALNTLEMAVNNSEKSGDRIRVSTDNLHQLM ATKSFLYDKSGEEHYNLISALHKSMRNSDADAAVYWLSRMMNGGEDPLYIARRLVRFASE DIGLADTNALNVAVNVFQACQFIGMPECDVHLTEAVIYLSLAPKSNAVYKAKLKAAEDVK HSVNEPVPLQLRNAPTSLMSDLGYGKGYQYAHESKAKLTTMQTMPDSLVGHIYYEPTEQG NEGRFKRRLAQIKDWEANHRK >gi|238617815|gb|GG669606.1| GENE 165 182511 - 182744 286 77 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0845 NR:ns ## KEGG: Lbuc_0845 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 76 1 76 77 92 53.0 4e-18 MELSQTDFDILNAIKSGRVESGTLISHFVDYCDNAIGGNPRPLIDAGLIKSDGGSVNGLT DAGLKAWQDFKDKKANV >gi|238617815|gb|GG669606.1| GENE 166 182941 - 183675 563 244 aa, chain + ## HITS:1 COG:ECs4801 KEGG:ns NR:ns ## COG: ECs4801 COG0730 # Protein_GI_number: 15834055 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Escherichia coli O157:H7 # 2 240 18 250 291 60 26.0 2e-09 MILFLVVLIALFGALVRTVFGFGEALVTMPLLALISFDLNTSVALIGALGLIVALPGAIR YRVHINVAIVRRLVIGSILGVPVGIFLIKYVDKTIIMRILSVFLMVYGSYCLIRIYRQKT NKPRFQSLFFDYVAGVISGVMGSAYNSHGVPIVVYGTLKKWPVMELRGILQAHFLCVGIL VVASQAIAGFWSMEVFELLAIVTPLLFLVIPFGNWLTDHIDNALMIKYVYGLLIVFGMML FIKS >gi|238617815|gb|GG669606.1| GENE 167 183775 - 184029 299 84 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509639|ref|ZP_03939688.1| ## NR: gi|227509639|ref|ZP_03939688.1| hypothetical protein HMPREF0496_1802 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1802 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 84 1 84 84 141 100.0 1e-32 MTQQSMVTLHPFVLKVRGKKVLFAPNYPEDARRRFVKLKKRADKDPFDTDAEFDLAIEDK LRIDALNSYYEDLDEKEAFRAKAG >gi|238617815|gb|GG669606.1| GENE 168 184163 - 184759 537 198 aa, chain - ## HITS:1 COG:ECs2037 KEGG:ns NR:ns ## COG: ECs2037 COG1396 # Protein_GI_number: 15831292 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli O157:H7 # 12 197 3 176 178 110 34.0 1e-24 MSTLAGGFFTMDIGAIVSTNLRKIRLEKGFSLTKLSELSGVSKGMLSQIENNGTSPTINT IWKICAGLNVPYTALLEGRVETTKIIKKSAINEQKSADGHYRIYCYYPDSPHHNFELFQM ELDKDASYTSVGHSKVSREGRSEEYIMVLSGQLTLVVGGDQLILNENDATRFDPTGKHIY QNSGNQILKATIINFYPV >gi|238617815|gb|GG669606.1| GENE 169 184899 - 185606 418 235 aa, chain + ## HITS:1 COG:L54719 KEGG:ns NR:ns ## COG: L54719 COG1296 # Protein_GI_number: 15673595 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Lactococcus lactis # 1 235 1 235 235 249 64.0 2e-66 MNNELTVSSAAKETLPTVFGYIGIGLAYGIVGKASGISPLMITLMSLITYGGASQFIIVS MLVTHSPMLSIILSAFLVNSRMILMSTTLAPYFQKESLLKNIILGGLVTDESFALGMNKL NYTNRKLNFAWFNTVNWFAYLAWAAASLVGALLGNFISNPEKFGLDFALVSMFIGLLYLQ LISDKSIKFKLQLLVVGFVLVATFIGIIFIPANLLTLVVTLLACAFGVVMKHAFF >gi|238617815|gb|GG669606.1| GENE 170 185593 - 185925 197 110 aa, chain + ## HITS:1 COG:L54406 KEGG:ns NR:ns ## COG: L54406 COG4392 # Protein_GI_number: 15673594 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 108 1 108 108 99 62.0 1e-21 MPSSSFVFLTILGSGIATWLSRIMPFVILKKFKLSAGVVEFLSFVPIAIMSALWFENLFI QHLGQLPSLNIPNLLASLPTVLSAVISKNLLVTVVVGVISLGFLRIFLGM >gi|238617815|gb|GG669606.1| GENE 171 186120 - 186590 445 156 aa, chain + ## HITS:1 COG:lin0633 KEGG:ns NR:ns ## COG: lin0633 COG0454 # Protein_GI_number: 16799708 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 7 151 1 141 143 101 37.0 7e-22 MITLNAMSQKDYDTYLSTAVTDYAGEKIKAGTWTEQLAFQRASEEYQRLLPNGIATPDNY FYRIDHNETKVGVIWIAKSTDNPETAFIYDLQILKQYQDQGFGKQALKLAGNEALKIGFK NMALHVFGSNKRAIHVYRESGFEVTDINMEKKLSKE >gi|238617815|gb|GG669606.1| GENE 172 186749 - 187819 987 356 aa, chain - ## HITS:1 COG:PA4097 KEGG:ns NR:ns ## COG: PA4097 COG1063 # Protein_GI_number: 15599292 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Pseudomonas aeruginosa # 1 354 1 345 352 253 38.0 3e-67 MKAVRIYGEKDIRVEDVDIPEPKDDQVQLKVKYCGICGSDLHAYLEGWGLPTVPYPLTGK TVPITLGHEFSGEVVKVGKDVDGLQVGDHVAVEPLLACGKCENCRAGNYNFCNRAVSTDG AGNFLGFSEDGGMAQYANVQGVFAHKLPEDMSFELGALAEPTAVVYEAVKKSHLREGQSV AVMGAGPIGLLQALLAKIAGANKVYIVDVSKVRLEKAKELGLKHALDPTQVDVEKEIKKD FPNGVDITFECAGVQATFDTALKVTKRTGTLQVVALYGKPLTMNMTDDLIMQGLDIITTL CYNNSFPNVLGIIDNHKDLFKKIVTKKVSLDDALDQGIKALATDKSQVKILIDPAL >gi|238617815|gb|GG669606.1| GENE 173 188090 - 188530 292 146 aa, chain + ## HITS:1 COG:lin2060 KEGG:ns NR:ns ## COG: lin2060 COG1607 # Protein_GI_number: 16801126 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Listeria innocua # 2 144 26 167 172 65 32.0 5e-11 MNNNQIQFGGRTLEILDANAGLSGVKFLPSHLSFVTAGYDHTQFLAPLTPGDISKCTSYV TGADKKAVEVFSKFEAYNKQTKETKLAFMSFCTLIVTNPLEDVQFPKLIPETAEEVYLVK NYQERLKKRRQELQENKEIVKHLNIE >gi|238617815|gb|GG669606.1| GENE 174 188665 - 189432 903 255 aa, chain - ## HITS:1 COG:lin2278 KEGG:ns NR:ns ## COG: lin2278 COG1028 # Protein_GI_number: 16801342 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Listeria innocua # 6 255 4 253 253 236 54.0 4e-62 MDTQLLMNKVAIITGAGSGMGAAMAKLFAKEGAKVVAADLNIDNANKVIKDIQSDGYEAA AIKVNVADRQDISSMFAFAKDHYDHVDILVNNAGIMDNMAAIGDLEDDEWHKVMAVNTDS VMYGMREAIREFLPKHTGVILNIASVGGTNGARAGAAYTASKHAVVGLTKNTAYMYANEG IRVNAIAPGGIQTNIAQTMGNINEFGIKRQMTGMQTSPKPGSPEEIADTALFLVSDKAAY INGAVLPVDGGWTAY >gi|238617815|gb|GG669606.1| GENE 175 189592 - 190029 547 145 aa, chain + ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 2 140 5 143 152 78 34.0 3e-15 MYETILVPVDGSDNSKRAVSEAAKLANKFGSTLQIVSVASDQRYVQYGVTLGQDVMQSFQ ERAEEILDDARDEAEKLGAKVETHFVVGVPKIQISKALPAKYGASLIVMGKSGVNGISRA ILGSTTAYVVRHSTVNVMVIDYPRD >gi|238617815|gb|GG669606.1| GENE 176 190248 - 191354 825 368 aa, chain + ## HITS:1 COG:SA0428 KEGG:ns NR:ns ## COG: SA0428 COG5438 # Protein_GI_number: 15926147 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Staphylococcus aureus N315 # 15 358 13 358 370 189 33.0 1e-47 MAFKLKSRMTWIQVLIVVIFCLVAVFLTAHDDSLYSEPIFQVTKVTNGKVTKMSDEFHNV DYYHQQLLSGHITNGKYAGKHLKIQNAYSNSGAMDHQYRTNQKLFIVLHTSPKLHATVKD LKRDTPIIFLLALAVSLLFIILKFRGVTVISSIVINTILFWLAVKIDHHNNGAAVIPIFS ILAVIFCIITLFLVMGWNRKMLVTLSAVISATAITILLTLLVFGVTHEKGMYYESMQYVT QLPKPLFLAEVLIGVLGAVMDEATDIVASLATLKQERPELSKLQVFNSGRQIGKSIMGPL INVLFFIFMAETLPMTLLYLKNGNTWKYSFSMNMSLGMTSSLISGIGIVLTVILSSLFAG LLIKGDER >gi|238617815|gb|GG669606.1| GENE 177 191354 - 192133 705 259 aa, chain + ## HITS:1 COG:L17781 KEGG:ns NR:ns ## COG: L17781 COG5438 # Protein_GI_number: 15672790 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Lactococcus lactis # 21 235 21 235 253 138 38.0 1e-32 MGSLTALGALLLILMIIVGGKQGISSFLSMVINFGILFFSIVLIAFHLPPIAVTIVASVI LLSITIFWSSASDNASTTAFQASVMILIILIVIIIPIEYWARVGGFGLEDSEELEGLSMY VGISFTKLAISTAILSSLGAIAEASIAIASGLDEITIQHPKISSSQLFLDGIVIGKQIIG TAVNTLFFGFFGSSMGLFIWFYGLNYSFGDIINDKVFAAELIAIIISLIGVVLTIPGTTL MMSHRLKKIQDKEKSESGK >gi|238617815|gb|GG669606.1| GENE 178 192705 - 193949 1001 414 aa, chain - ## HITS:1 COG:lin1227 KEGG:ns NR:ns ## COG: lin1227 COG0014 # Protein_GI_number: 16800296 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyl phosphate reductase # Organism: Listeria innocua # 5 413 4 414 415 468 57.0 1e-132 MNDTLIQIGQQAKKAAVKMGQLDTITKNQILGQFAESIVAHIPEILTANQKDLANATEMP TKFTDRLKLTDQRIKDMAEGLRQVAALSDPIGNIDRGWTNEAGLLIEQKRVPIGVIAMIF EARPNVTVDASALTFKSGNAVILRGGKEALNSNLALAEVMREVLKQNGLDENIIQILHDT SHKTADDLMHLNDYVDVLIPRGGAGLIQTVLKNSTVPVIETGAGNCHIYVDQFAEEQMAV DIVVNAKVQRPSVCNAAEKLLIHQDVAKKLLPAIAKALEKHGVELRGDRRSQEIVGSIKP ATETDWSTEYNDLIMAIKIVDNEQEAIDHINQYSTGHSEVIITDNYQNSQTFLNQIDSAC VYVNASTRFTDGFQFGFGAEIGISTQKLHARGPMGLNELTTTKYVIRGNGQIRK >gi|238617815|gb|GG669606.1| GENE 179 194012 - 194857 652 281 aa, chain - ## HITS:1 COG:lin1228 KEGG:ns NR:ns ## COG: lin1228 COG0263 # Protein_GI_number: 16800297 # Func_class: E Amino acid transport and metabolism # Function: Glutamate 5-kinase # Organism: Listeria innocua # 1 272 1 272 276 280 53.0 2e-75 MNNRTINANRIVVKVGTSSLIHPSGAINLETFDQLAYTLSALNNQGKELILVSSGAIGVG LNKMHLKKRPTEIGAQQALAAIGQSELMTLFTQRFNHYLTDIAQVLLTHDIFDYPKSNKY VMDTFNCLLNDNVIPIVNENDTVATDELDHKTTFGDNDQLSAIVASHVNADLLIVLSDID GFYDQNPKKYVNANLISTVNHINEETFTVAGGSGSRFGTGGMQTKLLAAKRMLDENRQMV LANGKDPRVILDILAGKQIGTLFSNDSTSNQHRDLANLNQK >gi|238617815|gb|GG669606.1| GENE 180 195311 - 196276 857 321 aa, chain - ## HITS:1 COG:lin2703 KEGG:ns NR:ns ## COG: lin2703 COG5632 # Protein_GI_number: 16801764 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Listeria innocua # 32 238 85 282 770 186 50.0 7e-47 MKKRNLIKAVCALSFAAVGIFSYGNSAHAESVNTYIANNNIDHADVTSSVWGGFPKNGYR HGTGKPEGVVVHETANPSSTIYNEIAYMKRNYRAAFVHTFVDASRIINIANTDYLAWGAG YPANARFVQFEQVRVHSKSAFAHEIANSAYYTAYILDKYGLTPNDAAYDGKGTVWSHKGI SKFLGGTDHTDPTAYYSSMGKTYFGSSYTFAQFYQLVKTTYDNISGSHEKKAFDKVSYQS ADDEALLGDKYKSYKLYNHVKNSRANIKSYSWSSVGATIGKKVYIDNIGTKSSGSAWYRI RFSTDNGVQKYWVYGKALNLD >gi|238617815|gb|GG669606.1| GENE 181 196577 - 197050 542 157 aa, chain - ## HITS:1 COG:BS_perR KEGG:ns NR:ns ## COG: BS_perR COG0735 # Protein_GI_number: 16077938 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Bacillus subtilis # 6 148 4 142 145 132 45.0 2e-31 MATNTQQLDVSLKRLKKKGIRITPQREIILTYLIGHHNHPSVETIRDGIDEKLPNLSVAT IYNTLKLFVDNGLVIELPNKDGGLRYDFFGVPHYHAICENCGKIFDIFDESYPDIVAHVQ KVAREKVGFTVTGTQLEVTGICPKCEKKLATRKPLSK >gi|238617815|gb|GG669606.1| GENE 182 197200 - 197703 360 167 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1996 NR:ns ## KEGG: Lbuc_1996 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 163 1 163 163 165 51.0 6e-40 MDSFEKFHPVLTAHYTLDWLTQTQVKRVDDLFNQPNFTTVSAEKLPNQIFDTVKGINHVM QRVMNATELTWGITDSNDGSFKGIITISGFNRDDKTGIIDFTFVKNEARGLSEVIKRVVE FAKDHFDFTKLEVNLNAPATVISSILKENSFEPLDRHRFELDLSTAN >gi|238617815|gb|GG669606.1| GENE 183 197802 - 198854 809 350 aa, chain + ## HITS:1 COG:L11851 KEGG:ns NR:ns ## COG: L11851 COG2706 # Protein_GI_number: 15674136 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Lactococcus lactis # 1 347 1 339 341 259 41.0 6e-69 MIEKYLIGTYTRRISKGVYQLELDTDNQKLQNLQFVGDAIDPTYVAESNSKRIYAITKVK DKDDNVTGGFKEWDGKSEDFPLTDIASIHDQETSPAYIAVDETRKLVFTANYHAGTICTY KIAGDGAITRADRIMDKGTLGFRPEQQDGPHPHYINLTPDNRVVAVDLGVDKVFIYDLDD SGKLTPVSELQMEDGYGPRHIAFDEKKGVAYLVGELSSHLAVLDYDEKAGKLTLRSISST IPEDWTEHNGAAAIRISKDGKFVYVSNRGNNTIAVFSSDEKGNVQLIQRISTEGDFPRDF NFSDDESFVICVNQNSDNGTLYTRDAQTGKLTMIQKDVKVPEPVCVLRKK >gi|238617815|gb|GG669606.1| GENE 184 199252 - 200091 676 279 aa, chain - ## HITS:1 COG:BH2000 KEGG:ns NR:ns ## COG: BH2000 COG0179 # Protein_GI_number: 15614563 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) # Organism: Bacillus halodurans # 63 278 93 307 319 161 37.0 1e-39 MYDHKPTFVAPQNNQIWGVPITGYDSIDDILNDWQSFESKVLINISDKAIINDDRAEPLD PKKFEQPVTHPRQLPALGFNYLDHMEEMSTARPKRPNVFNKFVSSLAGPTNAIHLSSDTV DWESELVIVIGNGGRNISREDAEDAIAGYMVGQDISDRTLQAIDGPSTQFDLGKSYRNYS PVGPYISTIADTDDIVSKQITTKINGEIMQQATVSQMIFDIQTLVSYISGVIELYPGDLI FTGTPSGTGVGRDPQVFLKSGDVFTSEIDGLGMIETKVN >gi|238617815|gb|GG669606.1| GENE 185 200165 - 202531 1265 788 aa, chain - ## HITS:1 COG:lin0195 KEGG:ns NR:ns ## COG: lin0195 COG1199 # Protein_GI_number: 16799272 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Listeria innocua # 5 784 5 777 779 628 40.0 1e-179 MTVHQIGIRQLVEFLLRTGDLSPITSSENTPQEGSRIHRKLQKRRPDSYQSEVSLKTSFQ YLEDEYIVEGRADGIDYQDSTVLIEEIKTSDLEFQSVPESTIQLYWAQAKVYAYILMEKD ALDDIRLQLTYVQTPDERITTRFKSYTKDEATSFFNELVAEYKAWIKLRRELNEQRIKSA KALRFPFTNYRPGQHQLAVNVYKTIMLEKHLFIEAPTGTGKTISTLFPAIKSMGESLISR IFYFTAKQSTRHVAENTISLMAKNGLTLKSITLTAKDKITFQEERDVPPEKNPYMVGYYD RVRPAIKDIILNENQITKQTIEKYAEKHKVDPFEYSLDVSLFCDIIICDYNYLFDPQVHL QRFFSVPDKENCFLVDEVHNLVQRSREMYSAALKLSPIKPLIDTLSKQKEANKKIIKKLE SLKRAFKRYSKEAGETVSRQIAQTAPIDNFNKTLGDLIAEIHEWLANQKPSPTVDLVVDY YLQCRSYYLISQFYDETYRTRVIVDEDHHDIIFRQFCMDPSKQLKESLSLGRAAILFSAT LSPISYYQRVLGDEADSLPMISTSSFPQQNCQVIIANNINTLYANRGKSIQPICETIFTL VSQKKGHYMIFFPSMNYLDAVLSEFSTIYPEIKTVRQESTMDNFARQQFLDEFRQTPEQT KVGFALLGGIFSEGIDLKNDQLIGVGIVSVGLPGMNAESDLIRDYFDSINGEGFSFAYQL PGFNNVSQAAGRVIRTNTDKGVIVLMDRRFNQTRYRKIFPKHWANIQVSNNPKQLENQLQ NFWKQFRN >gi|238617815|gb|GG669606.1| GENE 186 202662 - 203255 494 197 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1992 NR:ns ## KEGG: Lbuc_1992 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 197 1 197 197 273 71.0 4e-72 MKPVFGQIVRKKGQSYFSLGEVVTNNPQLILDNVNYIGKKNFVIHIKFGAGITRNVVLLV KLTDRQLPGYLTKTNLDTYQSAVESGDFLLLNTDSEDLNGFQLVEELEIEDPGDEQIANL ASIRENTIQFVEKYLKDLQTKIDKLSQRKANHYFSSKTHYEQVKDFLLSVSQLMDLRMKI NQVRQDEWRLKLRLGGQ >gi|238617815|gb|GG669606.1| GENE 187 203257 - 203466 196 69 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1991 NR:ns ## KEGG: Lbuc_1991 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 69 1 69 72 77 57.0 2e-13 MMDQVKLQSIIKTFAEYNIKIEAHDMTITAINGESVSFDAKAYMQDQLIELICRVMANQL IKAVWQTEH >gi|238617815|gb|GG669606.1| GENE 188 203563 - 204552 824 329 aa, chain - ## HITS:1 COG:lin2126 KEGG:ns NR:ns ## COG: lin2126 COG0253 # Protein_GI_number: 16801192 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Listeria innocua # 2 326 4 323 329 249 44.0 4e-66 MVQLLKVHGSQNQFFILDQTELKTKLNQEELVALTKQITDPAKGLLDGADGVLVIDHSDH DGTLGSMQVINTDGSIASMCGNGLRTVSRYLSDKYHQNSFKVETMDSDLAVHRETSLAPG VPTFSVEISPVTFNKESLPFDNLDGDTLIDREVPAFTKGLKFTAIAVPNPHLISFVSEEV MNSDALGKLGKELNQPNPYFTDGVNVSFAQILDHNQLFVRTYERGVGFTNACGTGMSATS LAFCLNHPEVSDFEETISVYNPGGMVKTRVHDDDGSYHIDLIGNATFTHKVEIPETDLHA NQLQHAEITDTGEQKDYLNFVNDLKQQEA >gi|238617815|gb|GG669606.1| GENE 189 204584 - 205987 1147 467 aa, chain - ## HITS:1 COG:BH1500 KEGG:ns NR:ns ## COG: BH1500 COG0527 # Protein_GI_number: 15614063 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Bacillus halodurans # 1 452 1 452 456 429 48.0 1e-120 MKVVKFGGSSLADAAQFQKVIQIIQDDPQRRVVVTSAPGKRFTGDIKVTDLLIKYANATL AEKKNDYASAIFARYQEIGNGFGVDQNILEDIHSKLIALPNKAYPNDDYLMAAFKAHGER LNAELFAACLNKLGTKARFVDPSEAGILLTDNPNGASILEETYANLDQLKYGDEKLVFPG FFGFTKDGNIVTFARGGSDITGSILARGLHASLYENFTDVDAIYAANPKIVKNPIPISKM TFREMRELSYAGFSVFNDEAIIPAIQGQVPINVKNTNNPELPGTLIVPEKDLSIKRPVTG ITGSNRFAALYLHRYLLNKEVGFTLKILQILYKYGVSYEHMPSGIDDLTIIFDRNQLDDQ TIHKMCNDIQNTVNPDDMEWIDDYAIIMVVGEGMRARIGTIENIIRPLATHHIAVHMINQ GASRISIMLGTRESDADNAIRYIYDNFFKSGEMAAEELQASLDSSSI >gi|238617815|gb|GG669606.1| GENE 190 206699 - 208006 1293 435 aa, chain + ## HITS:1 COG:BS_lysA KEGG:ns NR:ns ## COG: BS_lysA COG0019 # Protein_GI_number: 16079395 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Bacillus subtilis # 11 435 10 434 439 511 56.0 1e-144 MSSDISQIQINQAGHLEIGGADALDLVKKYKTPLVVYDVSAIRNQIHHFQKVFEDNHVDY AVSYASKAFACIAMFQLVNQENVHIDVVSGGELYTAIKAGFPMDHVSFHGNNKSVEELEM AVDHQIGVIILDNFHEIALLKQILKDKDAHINVMLRVTPGVSAHTHEYDQTGQTDSKFGF DLQSGQARKALDEVLADQRMTMLGIHAHIGSQIFEVKGFELAATKLIDTVGQWHKEIGYV AKVVNVGGGFGIRYTEEDDPIAPEMFVDAIVKAIKKRAGELALPMPAVWIEPGRSIAGPA GYNLYTVGSRKDVPGIRSYVTVDGGMGDNIRPALYQAEYDAVLANDPKAPAKETVRVAGK YCESGDILIQKQALPQTKPGDVLAMLATGAYGYAMASNYNRNPRPAVIFVENGQDNLAIR RETFEDLIRLDQPLE >gi|238617815|gb|GG669606.1| GENE 191 208588 - 209298 897 236 aa, chain + ## HITS:1 COG:lin1010 KEGG:ns NR:ns ## COG: lin1010 COG2171 # Protein_GI_number: 16800079 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Listeria innocua # 1 236 1 236 236 261 63.0 1e-69 MEQLSAREIIEYIGNAEKKTPVKVYVKGALRKVEIPKSIEAFVEKHTAVLFGDWKDVEPF LKANKDQIKDTKIESDATNSAVPLLDAKNVNARIEPGAVIREHVTIGDNAVIMMGAIINI GAEIGADSMIDMGVVMGGRAIVGKHSHIGAGAVLAGVIEPASAQPVQIDDNVLIGANAVV IEGVHVGEGAVVAAGAVVTEDVAPYTMVAGMPAKKIKDVDSKTKSKTELEDDLRKL >gi|238617815|gb|GG669606.1| GENE 192 209303 - 210463 1063 386 aa, chain + ## HITS:1 COG:L80177 KEGG:ns NR:ns ## COG: L80177 COG1473 # Protein_GI_number: 15672264 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Lactococcus lactis # 8 380 3 372 384 410 53.0 1e-114 MAQLTTENLIDIRRHLHAHPELAMHEFETHQYLLAVIKGVNQQYLEIREVPDLPTALLVY IHGSDPKRTIGYRTDIDALPVTEKTGLPFASKTPGVMHACGHDIHMTVALGVLSWFSEHQ PKDNMVFFFQPAEESQNGGKVAYEQGVFAGKWRPDEFYGLHDNPNLPAGAIGCRMGTLFA GTTEVNVDLIGKSGHAAYPQDANDMVVAAAQFINQVQTIVSRSVNPIEGGVITFGKLDAG TIRNVIAGQARIEGTIRGLTQKMIEHIVDRLKQVANGVATSYGATVNIAFNQGGYLPVEN NDELTKRFINFAKQDPQTQFIETQPAMTGEDFGYLLSKIPGTMFWLGVEDDSALHAATLN PKESSIPKGVNSIVRFLEFRQGESVL >gi|238617815|gb|GG669606.1| GENE 193 210512 - 211402 862 296 aa, chain + ## HITS:1 COG:SP1014 KEGG:ns NR:ns ## COG: SP1014 COG0329 # Protein_GI_number: 15900886 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Streptococcus pneumoniae TIGR4 # 6 295 11 300 311 276 45.0 3e-74 MINADIMTAIITPFSDDGTINFDALETLANHLIDTGSKGFVIGGTTGETPTLSHDEKIEL YTRFAKIVNGRGVVIAGTGSNNTYETAQFTSEVSHIPGIDYALVVVPYYNKPDQRGMIAH FTAVAEQSSVPLIIYNIPGRTGVTMANDTVVELSKNPNIAGVKQCTSMDDFEYIVEHTDD DFNVFTGEDAQALFAKVVGGRGVISVASHIYGKEIRQMYDDLYDGDYKAAGDLMRFLSPK IKALFSYPSPSPVKAVLNAQGYHVGDCRLPILSLDDEEKAILAKRLGIRDLESVQN >gi|238617815|gb|GG669606.1| GENE 194 211490 - 212263 740 257 aa, chain + ## HITS:1 COG:SP1555 KEGG:ns NR:ns ## COG: SP1555 COG0289 # Protein_GI_number: 15901398 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Streptococcus pneumoniae TIGR4 # 2 257 3 255 255 246 48.0 2e-65 MIKVLVAGFMGSMGQKTVQMINEDDNFELVGAYNPGIDVAHMQGMGLNKNVKLFSSLDEI ETDADVWIDFTIPSAVFGNVKFAIEHGIHPVVGTSGMKDDQIQQLRELADQKKVGGIIAP NFGLSAVLLMKFAKEAAQYMPDVEIIEMHHDDKLDAPSGTALSTAQMIDEVRGDHPAPKS EETLKGVRGGDYHGIKIHSVRLPGYVAHEQVLFGGTGEALTIRQDSFDRGSFMNGVKLAV PAAAKATKLIVGLENIL >gi|238617815|gb|GG669606.1| GENE 195 212281 - 213468 1105 395 aa, chain + ## HITS:1 COG:SP0035 KEGG:ns NR:ns ## COG: SP0035 COG0436 # Protein_GI_number: 15899981 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 8 390 3 386 389 399 50.0 1e-111 MPELDKGLSEVVNKHIKAVGPSGIREFDQKISSIPGIVKLTLGEPDFNVPEHVKQAAIKS IEDNKSHYSVQKGIIELRRAISRYLSNRTGVDYDPETEIVVTVGATEAIFSALTSMLNPG DKVIVPTPAFALYFPIIQVAGAELITIDTSDDGFVLTPEKLQKALDENGDRVKAIVLNYP SNPTGVEYSQEQLQALADIISKHHMFVLADEIYNELTYGVKHYSIAKLLPGQTIVVNGLS KSHAMTGYRIGYFAAPKDFVTNAAKMHGFAVTCPSNPAQYAALEALTNGLEDAVPMREQY NKRRDYIAKRLEEMGMEIALPQGAFYIFAKIPDTINETPVEFATDLAEKAKVGVVPGSAF GPGGERYIRMSYAASDEDIKLAMDRMSAYLLDRVK >gi|238617815|gb|GG669606.1| GENE 196 213568 - 214650 1089 360 aa, chain + ## HITS:1 COG:lin1476 KEGG:ns NR:ns ## COG: lin1476 COG0136 # Protein_GI_number: 16800544 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Listeria innocua # 2 345 3 342 347 421 61.0 1e-117 MREFNVAILGATGAVGTRLISQLEQSTIPVKSVKLLASAHSAGKKLKFKGRDVTVEEAKP ESFEGVDLVLASAGGSISKKFLPEAVKRGAVCVDNTSAFRMEPEVPLVIPEVNEKALYNH RGIISNPNCSTIQMVVCLNPIYKKYGLKQVIVSTYQAVSGAGQSALNELMEESQQVLNGE KTDPKILPTKGDKKHYQQAFNLLPQIDVFEQDGYYTHEEWKMIHETKKIMLDDMDAKDIK VTATCVRVPIRIAHGETVYFEVADDNANTDEIKKALADAPGVVLQDDTAHQIYPQPIEAE GKRETFVGRVRPDYENEGSYHMWVVSDNLLKGAAWNTVQIAERLVADDLVRVPDNPYLGK >gi|238617815|gb|GG669606.1| GENE 197 214919 - 217645 2335 908 aa, chain + ## HITS:1 COG:YPO0451 KEGG:ns NR:ns ## COG: YPO0451 COG0474 # Protein_GI_number: 16120780 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Yersinia pestis # 4 892 8 897 908 642 38.0 0 MEQKITEAPPEQGLWQDSTEELVKEYGTNSENGLGEQEAEKRLAQGGYNELTVKKQSKLV KFIAQFNNSIIYILIAAAVITLLLRHYSDSSVIGIVIIANAFIGFFQEIQADNALTKIKE LLVSQNYVVRDGQKIEVPARELVVGDLVNLEAGDAVPADMRLISADNLRIQESTLTGESN SVEKTEDPIDKASVPLAERSNMAYASTAVTQGSGMGIVVGTGSRTEIGSIQQSVSNVKTQ VTPLMKNLNKLGVNLSVFIVVIAVLLFILGLYTKIYSLPVLTIAIITMVVGSIPEGLPAS TSVVLARGVQVMTKRGAIVKTLPAVETLGAVDIVDTDKTGTLTKNEMTVTDVITHDHHYQ VTGTGFVDNDKGVSGNVLLDSQKVDWQNDQNFVELVKIAGTTTDAELVQTDGEWRLTGEP TDGALTTLFHKLMGRAPEVDELDTLPFDSAYRYSARLIDDDKQHNELMVKGAPGTIFDMV KSSHPDFDSDSWYEQVNKLTDRGLRVVALGWKDVSNSENEIVMDDISQGIQLSGIVGIMD PPREEVIPAIHHLRRAGVKVNMITGDHPDTATAIAKKLDLDESIHAITGPEIDKMSDEEL SKEIGRYNVFARTTPANKLRIVRAQQVNSKIVAMTGDGVNDAPALKQANIGISMGIKGTD VAKESADMVLVKDSFTTIVDAVSEGRHVFDNIQKTIRFLLPTSFAEGLVVLISMIMGQEL PLYPTQLLWINTVSALTIQFAFIFEPAEESIMVRGPRDVTKGILGKMDVFEIVYVSVLIS SLGIFTFDKFVDANILNPVLGSTMAVNIIIFGKIFYLFNIRNSYPIISKHFFENKMAFGI IGILLALQAFLVYAPFMQGIFHTATINFYYGWVVPAICGFVVLVVTEIIKLIRIQYRKRA GQATKIRE >gi|238617815|gb|GG669606.1| GENE 198 217713 - 219185 1222 490 aa, chain - ## HITS:1 COG:L184516 KEGG:ns NR:ns ## COG: L184516 COG0477 # Protein_GI_number: 15672362 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 30 480 8 461 467 319 42.0 9e-87 MIQGGHTLKNTSNSTQSSPSTTQKNGWWVLVSIGTFAFMSNLDSSIVNIAMPIMAKELHV PMNQIEWVVSAYLIILSALLLFFGKLGDLYGKVKVFRIGTVVFLAGSFISGLQINFPVLL IGRAIQGIGAAMTLSNTYGITTSTFGVKERGRAMGFVGTFVALGAIAGPGLGGLILSQLS WGYIFWVNLPFGIFAIILGAIVMPKSYQTTGKGIDWFGFINFALLIFGLFLGVFLGQEIG YTKPLPLILFAIAIVTFWGFIHTEKRTKNPLMPLSMFKIKAFSYGLGAAVLIFLSNFFTV IIMPFYLEDARGLTAGQAGALLIIFPIVMVFAGPIGGWFADHFSQAKVATIGLAIVAFAQ ALYYFLTLNSPIWVYVIITIVMAVGTGLFQSPNSDIVMSVVPKDQLGSAGSLNALARNIG MISGTALSTSALFIGMSIKAGFHVTTYLPSQPEVFISGMHIAFAISLIIIIGALILSILQ GRNVKATDLK >gi|238617815|gb|GG669606.1| GENE 199 219608 - 219937 328 109 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1976 NR:ns ## KEGG: Lbuc_1976 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 109 1 109 109 147 72.0 2e-34 MAKQNRRRDIIVDMNEFIVTYAATLLDPSQNLSKLIYDTTKDDITKMDDLFKDNGFGRKN KFVNIGEGFLRDWKGLDEEEAKQQADQLAKDAIDYLGKNTDYFETWRTD >gi|238617815|gb|GG669606.1| GENE 200 220016 - 221086 1081 356 aa, chain - ## HITS:1 COG:SPy1105 KEGG:ns NR:ns ## COG: SPy1105 COG0687 # Protein_GI_number: 15675088 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Streptococcus pyogenes M1 GAS # 1 355 1 355 357 411 57.0 1e-115 MKKFIIAIAVLLAICAGLGLGSHELTKSTGDSGSKVLNLYNWGDYIDPSLLSKFQKETGY HVNVETFDSNEAMYTKIKQGGTNYDLTVPSDYMVQKMKADHMLIPLDKSKLTGMSHYGAS FMNKSFDPGNRYSIPYFWGTLGIIYNDKYIKPGELTHWDQLWHSKYRNDIMLIDSARDIM GFSLISQGHSVNTTNTKELIAAKNKLNRLSPNVKAVVADEIKMYMAEGEAPIAVDWSGEA TEMMSQNAHLHYVVPTEGSNMWFDNLVIPKTAKHFKAIYAFLNFMNKPENAAQNAKYIGY STPNTDAYKLLPKSVRDDKQFYPPKRVLDKLEVYSNLSAKKVQQYNDLYLEFKMHH >gi|238617815|gb|GG669606.1| GENE 201 221083 - 221904 689 273 aa, chain - ## HITS:1 COG:lin0799 KEGG:ns NR:ns ## COG: lin0799 COG1177 # Protein_GI_number: 16799873 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Listeria innocua # 4 258 2 256 268 295 66.0 5e-80 MSNRSSKLGKIYIVIIFLLLYMPILYLIIYSFSKGTTMTNFRGFSLTHYGELFHDKRMLA IFLDTILIALLSSVFSTIIGTLGALGISNAKRERSRQTLLSLNNILLVSPDVIMGASFLI FFTSLKVPLGFWSVLLSHIAFEIPIVVLMVLPRLDEMSPSLINAATDLGATSGQVLSRVV LPFIQPGIIAGFFMAITYSLDDFAVTFFVTGNGFTTLSVEIYSRARQGISLEINALAGIM FVFSLILVIVYYFIENHNLVSRRKKDKLGVANQ >gi|238617815|gb|GG669606.1| GENE 202 221904 - 222692 485 262 aa, chain - ## HITS:1 COG:SP1388 KEGG:ns NR:ns ## COG: SP1388 COG1176 # Protein_GI_number: 15901242 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Streptococcus pneumoniae TIGR4 # 1 259 15 275 275 291 59.0 7e-79 MFYTPYMMWLALFVIAPVGLIVYYSFFNISHQFTFDNYATFFRSGTYLTMTANSVLYAFL ITLISLLISYPMALVISKLKHRDLWILLVILPTWINLLLKAYAFIGLLSHDGLVNNLFEL VGLPAQHMLFTDTSFILVASYIQIPFMILPIYNSLTDISDSYIKASHDLGATNWQTLTKI IIPMTMPGIKSGVQIVFIPSLSLFMLSRLIGGNKIITLGTAVEEHFLTTMNWGMGSTIGV VLIISMVVVMLFTNTKRKRGRN >gi|238617815|gb|GG669606.1| GENE 203 222727 - 223812 850 361 aa, chain - ## HITS:1 COG:SPy1102 KEGG:ns NR:ns ## COG: SPy1102 COG3842 # Protein_GI_number: 15675085 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 1 361 1 363 384 481 66.0 1e-135 MSKTIIELQHVYKKYDDFTALKDINFKLNQGEFYTLLGPSGCGKTTILQTIAGFTDATSG QVLFDGQKINDIPANKRQLNTVFQDYALFPNMNVFENVAFGLILHKVKKAEVAERVHDAL KLVQLDQYANREISELSGGQKQRIAIARAIVNRPKVLLLDEPLSALDAKLRKDMQYELRS LQQNLGITFLFVTHDQEEALAMSDQIFVMNKGQILQKGDPVDIYDEPINHFVADFIGESN IIPGHMVRDYEVSFLGHTFECADAGMRPNEPVEVVIRPEDLVITTPEKGKLQVKVSTQLF RGDYYEILAYDMQDNEWLIHSTNATTDNAIIGLTFGPNDMHVMRYNETEAKFNSRLETYE E >gi|238617815|gb|GG669606.1| GENE 204 223875 - 224246 343 123 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1971 NR:ns ## KEGG: Lbuc_1971 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 123 1 123 123 169 69.0 2e-41 MSDSDRYYKPKNSKDAMRQIEMLFNKYKDAPLTQELVDYHQNLVNRLKTDIMQAANVENI SSRTENLNSMINVMTRWLQIRLSGKPFNGQMSHFKYVSDETKTTFKRHVHKIKGGGSHRA SRH >gi|238617815|gb|GG669606.1| GENE 205 224339 - 225313 897 324 aa, chain + ## HITS:1 COG:L142722 KEGG:ns NR:ns ## COG: L142722 COG0252 # Protein_GI_number: 15672718 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Lactococcus lactis # 1 321 2 323 323 338 54.0 6e-93 MKTILAIHTGGTISMSQNEKGEVVPNDENPIAEEQVILNGQINLITDELFNLPSPHVTPE VMLLIKQRIMKAINDGVDGVVITHGTDTLEETAYFLDLTLPNTIPVVVTGAMRSSNEIGS DGLYNFRNAILVAATDESYGKGVLVVMNDEIHTARFVTKTHTTNVATFRTPTFGPIGIVT QNKAKYFQELIQTEVSDIDHVSAGVYLIKAYAGMNGDLFEAINRSTTNGLVIEGLGAGNL PPQTLPAIKRLIDNNIPIVLVSRCYNGVAQDIYDYEGGGIQLRKMGLILCQGLNGQKARI KLLVGLSAHKSGDDLRAFVSNAIS >gi|238617815|gb|GG669606.1| GENE 206 225509 - 226546 847 345 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1969 NR:ns ## KEGG: Lbuc_1969 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 345 43 387 387 431 65.0 1e-119 MLTYNDYGIQDGEVYLKISSVKSIETDSYDLASMKDRISFDEMNDLSSNPSFDMPIKMSD SLFDRIVKTLYEEQRVSLIITVEDGKLKYSEGLVKDVRADGLTFLNLNKFDFSKQRMMDF LFDDIHGIEFGGTELQLVQETLAMIKPENHIDDVSVRDTDKFRETIGKLRGTNKAIIIDT NDERKYFYVGQVIAGNANELVMMVVDMNGRFGGYVWIRYDDIKELLLDSDYLRLIHRFVK LNKDAKHFVLPVLNAERAFDDTDNILTHILYQSIKFRKIIRFELADKENFAAFPTNLNLT TGLLTVELLDVDEQTESTTKQIGIESIREMAFDYFKAFLLENQVD >gi|238617815|gb|GG669606.1| GENE 207 226665 - 226901 115 78 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1967 NR:ns ## KEGG: Lbuc_1967 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 68 1 72 72 62 47.0 5e-09 MPTRKFAFCPYCGTKLTENQVTCPNCHRKLPIEEAAKKSRPSLNQLISNPYKEGMDRYHE KTSGTSKKKKRSFWKKLL >gi|238617815|gb|GG669606.1| GENE 208 227269 - 228135 954 288 aa, chain + ## HITS:1 COG:lin0459 KEGG:ns NR:ns ## COG: lin0459 COG0702 # Protein_GI_number: 16799535 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Listeria innocua # 1 284 1 281 281 223 43.0 3e-58 MKYAVTGSTGHFGKYAISYLQKLIKPEDSIIALARSIEKAKSIYKDGVEVRPGTYEDPDQ LIDSLKGVDKLLFISSQPGAVMSRIDQHNNVVQAAKAAGVKFIAYTSFPHADTTEAPLAA DHKATEALIKKSGIAHSFLRNNWYLEDEMNFVEEASNGEPFVYSAGDGKVGWAPEALYAE AAATILTTEQPKEVYELAGPMHTYAELADVLRKVTGKQFEIASVSDDEFMANLRKYVPDQ VDAIMTMIQKLIRNHALEEDTTDLADVLQKPVPTLEEQVQALFKAPEK >gi|238617815|gb|GG669606.1| GENE 209 228250 - 228432 256 60 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1966 NR:ns ## KEGG: Lbuc_1966 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 60 1 60 60 85 83.0 7e-16 MAEQFSTLAEEIINYQKKNDMPDTQLAFNLRITVERLHDIKSMESQPTPEEKKLIEDFVR >gi|238617815|gb|GG669606.1| GENE 210 228507 - 228821 390 104 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1965 NR:ns ## KEGG: Lbuc_1965 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 104 1 104 104 119 72.0 6e-26 MRANQFAFAFGIFALIVGAIVDLYGVFTQFGTIDSAQEVLVGSFILGIGLAFLSIPNRLE RYIVQGIIGIGIFYYFYIQNNNIWIALIIAFILVALLEYGLKHR >gi|238617815|gb|GG669606.1| GENE 211 228934 - 229587 470 217 aa, chain - ## HITS:1 COG:BS_ykoC KEGG:ns NR:ns ## COG: BS_ykoC COG0619 # Protein_GI_number: 16078386 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Bacillus subtilis # 70 206 97 240 254 65 31.0 8e-11 MNPGMKLLLVVLIALEISFTQSLIVNIILIAISFVYVMVKRMNFKTLFLLIFWPLFPALG LFVSQWLYGSDGIHFAWVLFTRIYAYVFLGATFTLTSSITDLALTLEQDFRLPSKFAYGV LAAFNLMPKIREEVQIIKTSALMRGEVFHVWSPKLYFKAILSSIQWSQNLAEAMTSHGFV EDEPRTHYRVIRITVLDWAMFAFLIIAVQVMLFFIRY >gi|238617815|gb|GG669606.1| GENE 212 229587 - 231017 1101 476 aa, chain - ## HITS:1 COG:SP0720 KEGG:ns NR:ns ## COG: SP0720 COG1122 # Protein_GI_number: 15900617 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 86 472 75 439 461 205 34.0 1e-52 MTDVSISDFTYQYPKSETKVLNDLNLTFKHNHFSLLSGPSGSGKSTLLYFIAGLYPRFIG NDATGTIKFGDTNIKEIPRNHVSNHVAMMFQNPNQQFAMDTVIHELTFVLENIQTQPDQM DKIIDHALTFCGIEKLRDRIINTLSGGEKQRVALSCIVAMDAPVIVLDEPFASIDPDSRI DLIHKLKELQEKHGKTIILADHDLGNYQGVIDEFYYLDPQTHHIDLLNQAESQHFFDNFE STQTIDKQLALPPKDDKNSVIELRHFKLAPHDSLLLQLDHFNFYRQKTTLITGANGIGKS TLFNALTKLLPYSGMISYDGKNIKKIKPLNYAKNVTLLFQDAENQFLNVTVKEELDLSFS NRFNQDYTHEQVEQMLTQLGMQGRDEQVVYSLSEGQKKKLQIVEMLIMNPPVLLLDEPFK GLDYKSLRLMTDFLELAKTKYGQTQIIISHQLSGLEDLIDYHAHFENQNLTYQEVI >gi|238617815|gb|GG669606.1| GENE 213 231033 - 231623 597 196 aa, chain - ## HITS:1 COG:SP0719 KEGG:ns NR:ns ## COG: SP0719 COG4721 # Protein_GI_number: 15900616 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 15 187 4 176 186 132 45.0 3e-31 MENKSQASNNQHQSKWTLRNIILIALIAIFCGIIFWGIGFLYTALTVALTPIGAAPFAND ILMGLWCMAGPLTGFIIRTAGSAFLGEFLGAAVEVFLGGQWGAGAFISGLVQGIGSELGF TFTGYKRYDWVSLNASIFTTVVVTFAWDMIKNGYDKFALPLLIGLFITRYISTFIFGGIV TKMIVKLLDRSNAFNL >gi|238617815|gb|GG669606.1| GENE 214 232325 - 233113 664 262 aa, chain + ## HITS:1 COG:lin0440 KEGG:ns NR:ns ## COG: lin0440 COG0561 # Protein_GI_number: 16799517 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 1 261 9 266 270 125 31.0 1e-28 MDGTFLNERGTFDENRFQGELDRLAQKQMHFVSASSNHYQHLLKTFEHVSGPISYVCNNG ALVVDERGVIVSEDIIDHLVLRKALDWMLKTPSFFGAEIILVGRNGTYCNLPSQSKRFKA SKYFYENMQSAKDLRLVFDSIYKIDITWETGGVLERQNEFNHQFSGRLSATSSGMNGLDV MNAGVTKLTGIQPLLDDWRLSFDDVAAFGDNGNDFEMVNAAREGYAMKNAAQDLLVKVEH VTHLTNDEQGVQEQIDHYLNEE >gi|238617815|gb|GG669606.1| GENE 215 233099 - 234037 660 312 aa, chain - ## HITS:1 COG:BS_yxeI KEGG:ns NR:ns ## COG: BS_yxeI COG3049 # Protein_GI_number: 16081005 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Penicillin V acylase and related amidases # Organism: Bacillus subtilis # 1 300 1 306 328 149 31.0 8e-36 MCTSLTLQTLNHHVLLARTMDFPVRAAWKPALINQDYYETALSGKRAIRYPYIGGGRTEE NDQILVADGVNTKGLSCAELMFPLKAHYLDKPIADKLNLTPQDFLPWVLGEHASLQEVKA DLAHIAIIGQNWLAGNEIFAFHWILADQAGQTLLIEPTIKGLEVISDSIGVLTNSPTYPE HMARFAKSLHTNEDLTELSQKSQQIVMSQKFPRATNTPTTRFLVTAINKLGAQPSRTQFE ARNRLFNDLATVAIPYKPSMHQHPNFNYTHYISILDSTDQTYYFRYHDSKQVFSYSLSDE LAQHTNQNLFLI >gi|238617815|gb|GG669606.1| GENE 216 234161 - 234787 429 208 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1959 NR:ns ## KEGG: Lbuc_1959 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 206 1 206 209 317 76.0 3e-85 MESTWNLIGMALWLILLIYLIWMVHDMRSRRLKVIVQEKKAFTWQNFWISCGELVVFLLV FWGMSYTTFFQDVKKLNPNAVRVSYSYKPLIIRYKTDQSDYVTVNNGNGRKPIQRYTYYV EGRKYQTDSTSATVVYGKSNLNVQAEAYKWNKEWLNHLDDRYQHAWVGTVTTTYKKNWFN GIGLHAGRQADRFNLIRIPDKSFMTVEK >gi|238617815|gb|GG669606.1| GENE 217 235067 - 236947 1622 626 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1952 NR:ns ## KEGG: Lbuc_1952 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 625 1 625 626 799 63.0 0 MEVGIIGAGPRGILVTSQLFNQYKYNSDQSEPLSITLFDPYGVGGRVWRSDQWEGLIMNT PADQVTLFTDESVNMTGQVFDGPCLFEWAPSHEAHEYLTTHGYSNQIIDAADNLGSKDYA PRVLYGAYIQWFYDDLLKLEPEEVTTTVHPEQVTALNTQPDGKVVLQTPDHSFTFDKVVM ALGQQDNYLNDSEQALAQYAEDNHLRYLAPTHPGDADLSGIPAGEDIIIRGLGLSFNDYI SELTLGRGGQFMHNHDGSLSYQPSGREPRIIAGSRRGIPYYPKAVSEKGYGEQAEPAFLT DAKMDAASVNGKLPYAKFIDLLKLDMALVYYSLMIDERYPSKNASQFKKDFIAADDPEAV VNAFGFDEEDRFDWDYILNPFKDVQAVSTQNYQSIILNWLDNVTVDANKGSKTGPLGSSL ELLRDFRTQIRQMIAKERLSNVDYINDFLGKFDSDNNFLSIGAPALRSEQLSALIRSGIV VILAPGMEVKGENGWFVTAAPKRNTDKFKSSTLLEARVPKPDLDISANPVLENLVENGRA RTRILQADQKEVRMASVDVDPTTDQLLNKAGNIENAIYIWGLSLEGLRYITSASPRPGVN DPALQTADKIAADVLNVPSAKNVQMN >gi|238617815|gb|GG669606.1| GENE 218 236967 - 237530 544 187 aa, chain - ## HITS:1 COG:ddpX KEGG:ns NR:ns ## COG: ddpX COG2173 # Protein_GI_number: 16129447 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine dipeptidase # Organism: Escherichia coli K12 # 17 183 15 179 193 105 35.0 5e-23 MTSKKDQGYLNVHDVDPDIIVDLKYATTDNFTHQIVYDFDQAISRIYTVKKLGNASKILK DQGYRLRIWDAYRPIYAQKRLFEVYPDPIWVAEPNPNFSHQKGVTFDLTLTDQAGNNMEM PTPFDDFTGLAKRSEKPNWSTEAQKNYDILNHAMTQAGFVGYENEWWDYRDSNADEFGPL EVDPKDY >gi|238617815|gb|GG669606.1| GENE 219 237576 - 238223 360 215 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90022317|ref|YP_528144.1| ribosomal protein S15 [Saccharophagus degradans 2-40] # 2 206 8 215 500 143 39 1e-32 MTQTITVEESRQLDAKTINEIGIPSLVLMERAGLKIYENMLDNKDLDLSKILILAGTGNN GGDALVVARLFATHGYHVHTLTVGNPAHASDDHIAQAKICDYYQIPKVFLDEKFDKYTTI VDGLFGSGLSRNVGGDFATAIDKANASTANIHAIDIPSGLNGDTGNVMGTAIKAASTSTI AYPKVGMEKDQAKAYTGKIYVDDIGIYRGNQFEGE >gi|238617815|gb|GG669606.1| GENE 220 238404 - 238727 432 107 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1949 NR:ns ## KEGG: Lbuc_1949 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 105 1 105 109 116 58.0 3e-25 MSLEYPENMREFEDKFAIKKAHDPKVTREQVMRQTIQETFQAYLDYAEDGHYDTGKLVGN ELQVFDLKNRVTKKIQPLTDSFEQDFETNTDKLLGYLEDEANKAAEM >gi|238617815|gb|GG669606.1| GENE 221 239206 - 239316 74 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKSRIIFVTLLTSLGLAGAIGLQSNNFAGGGSSKL >gi|238617815|gb|GG669606.1| GENE 222 239261 - 240862 1331 533 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0544 NR:ns ## KEGG: Lbuc_0544 # Name: not_defined # Def: lipoprotein # Organism: L.buchneri # Pathway: not_defined # 257 533 410 672 672 205 49.0 4e-51 MPLDYKVTILRGGGPLSFEITAKADGVQSPVKNVVGNMTQTLTPESPTTLPQIQQAMYLT ADGADTVYAGTGNDKDGRATTYISKGVKDLTINIPIKNTSTQDVFLNEAVIFADTNSDGG PAFKIGKSATSTDYLLTPTQLGVPSTDIWAGTEGWPEGLRFNAGASGFYDFKPDGTLTDQ QKVNAVGIWGTLKAGADFTLKIPVYISNSDTLKNGAVYPLYYASWNTSGADSGYLNVGTF ASNVNGKNATISANTPITASTFNADPASATVAKVTNNKGETVTQEFASKTPGTYNVTLTA DGYGDTTFTLTVTNGGGTGGGSTGGNTGTTTVPVTPLTPATNVPTNSSSSSSTTSSSSST PTTTTKPSTSVGPNIAVKGEAVYATKKIALYKSTSFTKSKRIAWYPKQKRINRPMFVVTG YKRTSNGTLRYKVRDVNHGRKTAGKTGYITASRKYVVPVYYAGVPKSKKITVIAKKGINT YKSANLTGKAKHYKKGVRLTVKKLVKHNLTTRYQLSNGHYVTANKKLIIAGNY >gi|238617815|gb|GG669606.1| GENE 223 241188 - 241997 278 269 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509696|ref|ZP_03939745.1| ## NR: gi|227509696|ref|ZP_03939745.1| hypothetical protein HMPREF0496_1859 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1859 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 269 1 269 269 489 100.0 1e-137 MINLGELYEQSGQTFYTCLNFTFILLGVVAIFPTLNWIGLLFFIYNQSYNHSQLQSGNIS TFFIAFVAGAYLFEHSSKFFDEHVPPFMTTNFYNFNKLIILRFFNLFGVMQKNNIQYPIT EGIALSVQEALSIENQDSNVQRRLSILKIYLRFSSSYEGTFKLLCYIDLIACISNLLLAD IYMAVYELILFAMFYILWRIMTYWKRTLLWRILNNYWLSNSTATPKPKSLANQWFKKAIV DNMEIFNQKERILMRKDIKNSSNIKFKRK >gi|238617815|gb|GG669606.1| GENE 224 242269 - 243483 310 404 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509697|ref|ZP_03939746.1| ## NR: gi|227509697|ref|ZP_03939746.1| hypothetical protein HMPREF0496_1860 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1860 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 404 1 404 404 793 100.0 0 MKKISTVSSYLKVIEKLPLEPFLFRGESKDNGDSKNMATLFRRVHSETKTFQRHDSVETR TFYSFITDYGLNSILNEFHAETNNRSAEIDQNFLAYCQHHGIPTPLLDVTTAPLVALYFA CGDALNLNKSKFSPGYVYIFDPDMFIPLDPKYLEYSFQLKSLDIFSQTNISNLTSKISEV LTQGIFSNKKKYIERYIESELIPNIQKYLGQSHFQKDGWQKEIGELTANIADLVKMVKKS DSRLSTSYENYMTYAYRDFNVKDVKQMPTYTSLPNLLGFLIDIARTTSVGGNHFIPNIYF TLKPTINFDRMRAQSGRFIFQLSDSSGFYNQDSFGKQSFKDGRSVIGHEIPIYRTIQIAN KRRILYELDHYFGINQKNLFLDDDHICQYLKLGLYQNAVLRQED >gi|238617815|gb|GG669606.1| GENE 225 243748 - 244041 141 97 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509699|ref|ZP_03939748.1| ## NR: gi|227509699|ref|ZP_03939748.1| hypothetical protein HMPREF0496_1862 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1862 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 97 35 131 131 189 100.0 6e-47 MGYNVKYDLRVQIDSLLASHTEKHLRRLNTISVNRETFCFLKNSPDSKIGDLSDFQGNLG DSSDGYYTGAINGRTTGIIMTKENYHWQLTSIQIYKK >gi|238617815|gb|GG669606.1| GENE 226 244406 - 245302 460 298 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1746 NR:ns ## KEGG: Lbuc_1746 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 297 1 293 296 181 39.0 2e-44 MKKTFLIGLCIFIFGIICFSVGLSHGGYKTVYWDHGLNIEGVGKNRERSAYFTKVKQLKV STSNPVTIQRGPVSKIKVTYPDKTTVTSTNGLLNVQGSKHWKKAFVLFGFHTVRDNFGNT VITVPKNTKFNTINCDINEFDSDNLDGHVTLNGLSTKRLSFSGESHLSLNNIAASDKLKV DNMGRIAISSSNFKDGSVHNDFGRINLKSNKFDRLSAETDAGNISFNTQNVSEYFSANSQ AGSIDGRVKRNHRTQISASTSVGSKSIFGHSVKKYGHSNIKNPVTYRFITEVGHIRIK >gi|238617815|gb|GG669606.1| GENE 227 245299 - 245931 330 210 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1747 NR:ns ## KEGG: Lbuc_1747 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 210 1 210 210 242 54.0 6e-63 MNHYMEEFKLLLDQLTVDERTEVTHFYQEYLQDGHFDSYNACVKELGTPRQLARKILADY SIKASTAPRTASSKKQRSKNDVKTIWLILLALFSSPVAIPLIVVAGALLVAVIAVAGALI ISLIAIFFTAVISGLWSAAIGVSTILIQVWTGLFYLGIGLSFIGILVMLVPAFKNSIDRL IHKMTLFSKWLYDQIMPKNQAEKKRRGYQR >gi|238617815|gb|GG669606.1| GENE 228 246354 - 248117 1265 587 aa, chain + ## HITS:1 COG:lin2900 KEGG:ns NR:ns ## COG: lin2900 COG0514 # Protein_GI_number: 16801959 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Listeria innocua # 4 578 6 584 590 655 56.0 0 MTPQALLKTKFGYDSFRPGQQAVIDDILAHKNVLTIMPTGGGKSLCYQIPALLLKGVTLV VSPLIALMKDQVDALNETGIPATFVNSTLSFEEIDERFEQVREGAVKLLYVSPERLDSGA FSQLASLPIDLVAVDEAHCISQWGHDFRPSYLALTDRLHELPTRPTIVALTATATPRVAE DIKARLDLVDEVKTGFERDNLSFKVVKDQDSDRYLLDYLKLNSDQSGIIYASTRKEVERL TKLLRKRHFSVTMYHGGLSREERRQNQDDFLYDRALVMVATNAFGMGIDKSNVRFVIHDS VPGSLEAYYQEAGRAGRDGLPSEAILLFKIADVQTQHFFIDQSDRDEQSKQREYEKLQVM TQYANTEQCLQQFILNYFGEDGPTCGRCSNCLDTRDSQDITIDTQKVLSCVRRMNEHFGK TLVAQVLAGSKDQKIKKFRFDVLSTYGIMKGRSKREIAELIDYLTAAGYLAADGGQYPVL KVTALGLTVLQGKEKVSRKMAAKATKSLPVNDELFEQLRQLRLRLAEKQGVPPFVIFSDK TLHEMCSEMPTNASELLDVKGVGESKLDKYGDQFLEVISSYQDDVKV >gi|238617815|gb|GG669606.1| GENE 229 248278 - 249717 565 479 aa, chain - ## HITS:1 COG:lin2204 KEGG:ns NR:ns ## COG: lin2204 COG1167 # Protein_GI_number: 16801269 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Listeria innocua # 3 451 2 460 466 260 37.0 3e-69 MDWYLDRSAHTFRYQQLIDRIQIGIQNGELLPGEKLPSERQLAQQLGIDRSTVNRAYSEL AASNIVSQAVGQGTRVKKQPNADNHSNWLAYLRTQSDPLEPPFEPTDQASRLDLTTNILP PQLWPTLPPVKFPHYLPRDGSSNAVLGLSGLRHCILEATVSKQLNAKIDDTQILITSGIQ QAFTLLVEGLLAPGDSVAIESPSSLNQLKIFQLLGIRIYRVPITQTGRLNLSQLAKLKRQ HQIKLLFVMPNLQNPTGATMTLEDRKALVKACRDLSLPIVEGDPFQPLSQSKIPTLFCLD PDNVIYASTLSLLMGTQTRIGWLFGPAHVMYQLGILRDKLGERIGMAQQLVAQEFLCSPA FKDQQNQLHQRLSAKKEQLLLKLSPLIKCDWISITPSQTGFFLWINLLHLPQLQPRDYVL FRKYGLLILPAPYFGSPTNGFRLSFVALETDQQFDDIESRMDKALKTLHQKFNKIPKNS >gi|238617815|gb|GG669606.1| GENE 230 249721 - 250332 561 203 aa, chain - ## HITS:1 COG:CAC0331 KEGG:ns NR:ns ## COG: CAC0331 COG4684 # Protein_GI_number: 15893623 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 9 192 9 188 192 71 30.0 9e-13 MNSFRHQTTQRLVLLSMFIAIIIVQSLVPFLGYMTIGVVSITLIQLTVAISAILLGNRAG LMTGFVWGLLSFIRSWTSPSSPLEVLMFHNPFIAILPRVLVGLLAGIAYNVISKRKNDIL AASVSGLVASVTNTVLVLGLSAFFFIGLHATMGTVSGTQWLWILLGIAGNNGIFEGIFSF VVTPIIVTPLLKSSHLKHLLQGD >gi|238617815|gb|GG669606.1| GENE 231 250810 - 251661 767 283 aa, chain + ## HITS:1 COG:FN1224 KEGG:ns NR:ns ## COG: FN1224 COG2877 # Protein_GI_number: 19704559 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase # Organism: Fusobacterium nucleatum # 17 266 29 279 286 307 57.0 1e-83 MTKISTIFPDYQFRDDRLTLLAGPCAIESYETCAQVAETLKEITDDLNINYVFKSSFDKA NRSSGDSKRGAGLENGLAILRRIKETYHVPIVTDVHESYQCAPVAEVADVLQIPAFLSRQ TDLLVAAAATSRVVNIKKAQFMAPGDMQGAVDKVTPFSNKILLTERGTMFGYHQLVVDMT SLIQLREIGFPVIFDATHSVQVPGGHGSHSGGNRDFAFPLMRAALTIGVDGIFAEVHPDP PSAISDADNQLYLNKIKPILTTAVKLFDENRQQKEELVQDGLL >gi|238617815|gb|GG669606.1| GENE 232 251648 - 252601 827 317 aa, chain + ## HITS:1 COG:PM0525_1 KEGG:ns NR:ns ## COG: PM0525_1 COG0794 # Protein_GI_number: 15602390 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Pasteurella multocida # 1 206 36 238 238 181 47.0 1e-45 MAYYELAQDIFESEKQALDEVSQRLDEHFDDLVNMINETTGRVIFIGIGKSEIIAEKISA SLSSIGQSSFTIDAATAFHGDLGRLAKNDTVLLVSNSGETQEVVQTLFAMKTIFPNGIST VALTGNPNSTLAKNTDLVINLSVKKEADVTGLAPTSSTTATLVLGDALLVALEKIRSFDK KQFAQYHPGGSIGKMLLQQVKHVMHTKIPYVEEDTKINDVIYTISNFGLGITLVRDIETN QITGIVTDGDIRKKFLDVPAVKRSTARDYMTRGFVSINQEKRNRDAWRMMASRNISNLIV RDNDDHVVGVITIHDVL >gi|238617815|gb|GG669606.1| GENE 233 252756 - 253367 558 203 aa, chain - ## HITS:1 COG:no KEGG:LPST_C2482 NR:ns ## KEGG: LPST_C2482 # Name: not_defined # Def: extracellular protein # Organism: L.plantarum_plantarum # Pathway: not_defined # 1 202 1 219 220 157 51.0 2e-37 MKKFITTILATSAAAVGLFFAGAAGANASTTYTVKSGDSVWAISQQFGSSINAIEGANSI SNHLIMPGQKLVIPDGTSTTAATTNTTSAATQSTTNTQQKASYSQPAANTTANTTSASSN ASYDSSTKSAVLSQMASRTGVSAATWDAIISRESNWQPSVRNSSSGAYGLFQNMHINGGS VQQQVDAAVSLYNQQGMSAWSLG >gi|238617815|gb|GG669606.1| GENE 234 253987 - 255324 951 445 aa, chain + ## HITS:1 COG:L69353 KEGG:ns NR:ns ## COG: L69353 COG0531 # Protein_GI_number: 15672050 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 7 369 5 365 437 214 40.0 3e-55 MTATTKKQLSFLSVFLLGVDGIIGSGIFLMPSRIYAKLGDVSLLLMPLAGLAVLMIALCF ANLASKIPGDGGAWLYTYTAFGRFAGFEIGIFTWLLGIITMATEISALVTSLKSVFPTLN QHSHYLVVALLILGVLTLLNLIGSKFMDWVDNISTIAKVGVLILFVIAGLFFIHPANFSN LSGTVSNSAPLFNRFNEGFGMVFYMFTGFSFLPIAASKMKKPEKTLPIALISVLLTSALL YMIVQMTAIGVSGKDLATDNVPIAASFFHFAGQLGYDLALIGMLISILGVALSISFSTPL IASSLASEHQLLPRVLGHQDKRGVPIVSLLLSCGICALMLLSGNYLFLASCIVFTSFVQY VPTILASIRLQNHSKLPRGFRLPGGLLIPILALLVTSYLILSFSVKLMIAGIIVFTLSGV WYLYDDRDRQAKGLPRDIADKDKPF >gi|238617815|gb|GG669606.1| GENE 235 255404 - 258058 1755 884 aa, chain - ## HITS:1 COG:SPy2211 KEGG:ns NR:ns ## COG: SPy2211 COG4485 # Protein_GI_number: 15675943 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 9 869 12 850 858 227 26.0 8e-59 MKSKRNTLIISFLAPLIIVTCYFIYRQFAPFGSSSVMTVDMGQQYIDFFTYFRTTLLHNP GGIFYSFNKALGGDMLGTWSYYLMSPLNLLILLFPLSKLPAVVGVITILKYALAGLTAGY MFIKLQKTTGWMVVAFSTCYALMGWMVANQLNTIWVDGVILLPLIYLGLTHILSGSSSKL YIISLAAILMINYYIGWMIAIFVSAYVVVFTLCKAYQTSTSYLKVFLKWLGASLISGALS AWILIPTFYALLKSKSDFSQSPFFFTFEYNPIRMIAKFVNGAFDFTQLPKGTPNIFVGSI VLIMCLYYFFAPSIKKRLKIANGLLLVFLILSMCFEPLDVIWHGLALPVWYPYRFSFIFS FLMILIAFSALQDILKNGLSWLGFDISLGIIVLGFVYIAIAMKKFEFLTIGKLVTGIVFL ILAVLLLFFWNRFPKKAFFPLLLFLLVGAEMGTNLTVSLATLGYLDAADYTEFSTLMREA SAKTKKMDPGFYRTAATFSRTRNDAMTGNFYGGSVFSSTLETATTNFYNNIGNPSGTYYA VYSNGTVFTDSLLSMKYYFTPRHVKNKVESRRSLNYLTPLTSRPDLVDYSKKAHTSLINI YKNPYALPLGFLSRRQFMFPINNMNETAAYQNQIASQLDPRVGNLFSSIRPAEVTYDNAY PAANFSNSQIRKKDKTEPAGLTLTIPVKKHTSYYMSLGPRMTQDTLTYLVDNKPLQQYRT SAKETLLNFATGTNKNRTVHLQILANVNHAPLENVFLYALDNNKVKQLSTDLKKNSYKVT KYTDRSITGTIASPSDDRTMTTTIPYSKGWSATVDGKNVTPKRWANMFMYINVNKGKHTV KFTYTPVGFKSGLTISLVALIGLIGLCGYQFYRRKKVTDIKSTH >gi|238617815|gb|GG669606.1| GENE 236 258285 - 259034 786 249 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2257 NR:ns ## KEGG: Lbuc_2257 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 237 1 252 260 104 31.0 4e-21 MKKAMLFVFGVCLLALGGCANTSKVVSKSSKAVDSIKSGQAIVTLKTKTSAGTQQTIDGG TFTLNPFVVALNQSNQSQPTSHYYINKNVLYIQMNKVWYKQTVSKNSQIIKNTRSQMSAQ SAAQILKGIKKDLKLKSNDKTYTLSYDGNSKKATSTAKKVLVAQSGQAGKQNASQIDVSH LTFKYTVNKKTYLPTKSNIKIKYTSKGQSTTSTVSGSYADLNKVKKVDIPQSVTSSAKKF PAGLAKYMF >gi|238617815|gb|GG669606.1| GENE 237 259264 - 260022 714 252 aa, chain + ## HITS:1 COG:FN1706 KEGG:ns NR:ns ## COG: FN1706 COG0730 # Protein_GI_number: 19705027 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Fusobacterium nucleatum # 1 251 5 253 254 123 33.0 3e-28 MLTFIIVCPLVFLAGFVDAIAGGGGLISLPAYLMTGMPVHFAIGTNKLSSAMGTVVATLK FARSGYLRLGLSIFTVIAAILGSSTGSQLALHVSDFYFRIILAIVLPVTAIYLLTNKKAL GAAGFVQTGISNRQMVIAAAISFVIGGYDGFYGPGTGTFLILLLTGLDHLPINVAAGTTK VINLTTNITALAVFLFNAKVLLPLGLTAGLFSIVGNYLGASWFKKGGRKVAKPIIIVVLV IFFCKLMLDFFK >gi|238617815|gb|GG669606.1| GENE 238 260119 - 260547 423 142 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509713|ref|ZP_03939762.1| ## NR: gi|227509713|ref|ZP_03939762.1| hypothetical protein HMPREF0496_1876 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1876 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 142 28 169 169 251 100.0 9e-66 MNQSVRKSIVVFVTAFILTVVFTPLASHADTWHKGTPTALRGNWKSNAKTESTASGKEIV YYTLSFSKTAVGNSATINGKTLQFRLHAVDYQKISKQTYLIRTLFTDNQNGILTVKQTGK KKIVVGNGTNNTDKESYYKMDK >gi|238617815|gb|GG669606.1| GENE 239 260690 - 261118 585 142 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509714|ref|ZP_03939763.1| ## NR: gi|227509714|ref|ZP_03939763.1| hypothetical protein HMPREF0496_1877 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1877 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 142 4 145 145 199 100.0 7e-50 MNMTKFATKASITLGAALGLGLFIAQQPAHAATWHKGTPSAVRGTWKTKSTSIAVGSKKQ TAYDKVTIAKNALSDYSYTGKNKLGMKGTSAKYAVTGKYTYIIKAKVAKNVTLTLHVKKS SSKVIVIGNGTKNTNPAKYYKA >gi|238617815|gb|GG669606.1| GENE 240 261626 - 263224 1406 532 aa, chain - ## HITS:1 COG:SA2239 KEGG:ns NR:ns ## COG: SA2239 COG0531 # Protein_GI_number: 15928029 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 532 1 535 545 624 63.0 1e-178 MDSDKTTKIGLFQLVMLTLGSLIGSGWLFGSWEASKIAGPAAIISWVIGGAVIAAIAYDY VELGAMFPEAGGMSRYAQYSHGPLLGFISSWANWISLITLIPIEAVAAVQYMSSWPWSWA NWTHQFLKNGTITTAGLMVVFLFMLVFTLLNFWSVKILTSFTSLISVFKIGVPTLTIIML TIASFHPENYGHSLHEFMPYGSAPIFAATSSAGIIFSFNAFQTVINMGSEIENPKKNIGH GIFISLLISGIIYIVLQSVFITAIKPSAVAAHGWSGINFNSPFADLAIMLGIRWLSVLLY MDAFVSPVGTGVSFAASTGRALYAMESNQHIPSFVGKINQKYGIPRVAMIVNLVLSMLMV SVFRSWATLATVICTSTLIAYLTGPVTAVAFRKLAPDFKRPVKLKHLNWMAPLSFVLASL AVYWAMWPTTVEVILVILLGLPFYFYYEYRAGYVNTRKAFWSSMWMIFYLIFISIMSYIG SHQFNGINWIPYPWDFVVIIIASLGFYYWGIKSAHVFPDFYQAKELNDTVKE >gi|238617815|gb|GG669606.1| GENE 241 263436 - 265055 1235 539 aa, chain - ## HITS:1 COG:SA2239 KEGG:ns NR:ns ## COG: SA2239 COG0531 # Protein_GI_number: 15928029 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 8 538 11 541 545 619 64.0 1e-177 MDSKNTTKINLFQLVMLALGSLIGSGWLFGSWEASRIAGPASIISWIIGGLVIGAVAYDY VEIGAMFPEAGGMSKYAQYSHGPLLGFIAAWANWISLITLIPIEAVAAVQYMSTWPWSWA NWTHQFLKDGTITNSGLLVVFGFILIFTLLNYWSVRILTGFTSLISIFKIGVPTLTIVML TISGFHPQNYGQSWHDFMPYGTASVFAATSVAGIIFSFNAFQTVINMGSEIKNSRKNIGR GIAISLLISGVLYIILQSTFITAIDPAMIAKSGWHGIQFNSPFADLAILLGIHWLSVLLY MDAFVSPFGTGVSFVASTARALYAMEGNHHIPSFIGRINITYGIPRVAIIVDTILSMVMV SIFRSWAVLATVICTSTLIAYLTGPVTAVSFRKMGPDFKRPVKLKHLGWMAPFSFVLASL ATYWAMWPTTIEVILIIILGLPFYFYYEYKAGFVNTRKAFWSSLWMIVYLIFISVISYAG SHQFNGMNWIPYPVDFIVIIIASLGFYYWGIHSWQIFPDYYQAKKLNETVKPEENDSTY >gi|238617815|gb|GG669606.1| GENE 242 265725 - 266207 522 160 aa, chain - ## HITS:1 COG:MA3407 KEGG:ns NR:ns ## COG: MA3407 COG0590 # Protein_GI_number: 20092219 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Methanosarcina acetivorans str.C2A # 9 160 13 162 162 131 45.0 6e-31 MENINIDQFMSLAAKEAENNLRTGDGGPFGAVIANGQDILVTAHNQVLKDQDPTAHAEIT AIRKATKKLGSYDLSGYTLYTSCYPCPMCLGAIIWSNIKVAYYGNTAKDAAKIGFRDDYI YDFIKNSGRNENVLDLRPSHRDLTIKAFNEFSDQRTKVIY >gi|238617815|gb|GG669606.1| GENE 243 266222 - 267622 320 466 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 38 458 15 423 447 127 26 6e-28 MMKILVKKTDQASTKSFNVAKSADQLMVTPDADISTGQAVLLGLQHLLAMDVYVVPIIIA GMLSLPLANKMGLIQATFLAAGVGTILQTGVFMKMPVTQGASFVPLGALAGIYMAAGRGT IGMATIFGSLIVGAFFVLFLGFTRAVPKLIHKFVPSLVGGTIITNVGLSLIPSALNDNIF QASGNLNTNVLLGMITAGALVFCVIISLHFPQYNRIFRLGSILIALTVGTIAAALMGQFS FKSVLTAPWFSLPKFSLTSYGLHFSLSPILTMLIIYMVLMTETTGTWFAVSAVTGTKLTP QRINRGVFGEGISCLVSALVGSTPVTGYSTNAGIISITGVASKKAFISAGVWFILFSFVG KLSALLAAIPSAVIGGVFAIICSTIMLNGLRVVSQSHFAERDLYILGIPIILTLALVLMP SSLKNEVPTFAQYLLDSPIATAAITAIVLNQLLPENSQPKLSKTAR >gi|238617815|gb|GG669606.1| GENE 244 268009 - 269622 1565 537 aa, chain - ## HITS:1 COG:L194050_1 KEGG:ns NR:ns ## COG: L194050_1 COG0446 # Protein_GI_number: 15672768 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Lactococcus lactis # 2 456 4 452 456 365 42.0 1e-100 MKVLVIGGIAGGPSFATRLRRINENAEIIIFERGAAISVASCALPYYLGGLIRNRSAVIE RTPEILKQKNNIDVRLYNEVTSIDPDKKVVHVIDHQNDQTYTENYDKLIISTGASPSVPA IKGIDKADDAFVLRAITDADKIKHFLDTRHPKRVTILGAGTIGIEVAESFVNNNMDVTIV EQSDQVAAPFDTEIADIVAQELDEKGVHVLLNHTIKEITDNGKTLIFDDGSAHHTDMLFL GTGVQPNSQVAGAAGVKLSDDQHIIVDHHLKTNLPDIYAIGDVVETTSIITGQPIPSLLS SAANRQGHLLADILNGSPLEYKGFIGAGVSKFFDLTVSYVGYTEQALQQSGINDYRSVFI TPFDHAYFFPNADRVNFKLLYQDKTGKILGGQAVGRNGIDKRISQLSVAITGNLNVADLP SLEIPYSPPYSSTRDVLNIAGYVAINQLTNRTATIKLADIPQDDLNNAFFLDIREAGKPE AGSIKPTLNIPLSDLRDRINEVPTDKKVYITFRKGLGPYNASRILAGKGIKAIMIEE >gi|238617815|gb|GG669606.1| GENE 245 269815 - 270297 487 160 aa, chain - ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 149 1 146 152 95 35.0 4e-20 MEANYKTILVPVDGSKQAEDALAKGALIAKNNNGHLDVLHVLSTTQYGYNYGGMVDGDVI NNLVEDTTDYLNKLIARVKKDAGIDDINIHIRFGNPKTVIAFEFPRDHKSDLIVIGATGM SRLQRVLEGSVSSFVNRNAHCDVMVARTNQKNEPSVPEKK >gi|238617815|gb|GG669606.1| GENE 246 270411 - 270920 481 169 aa, chain - ## HITS:1 COG:BS_yxkA KEGG:ns NR:ns ## COG: BS_yxkA COG1881 # Protein_GI_number: 16080938 # Func_class: R General function prediction only # Function: Phospholipid-binding protein # Organism: Bacillus subtilis # 11 165 10 164 168 149 50.0 2e-36 MDIKVPLTKGFLPDKYAKHTAPANIANGSPIISFPIQITGVPKEAKSLALTLIDWDAVPV SGFPWIHWIAANISPDVLEIPEDNSRNLTVPMVQGRNSTAGGLVGNNDPDTAWHYNGPNP PDKVHNYHLSVFALDSELPLKNGFWLNELQDAMRGHILDTAEIVLPSQN >gi|238617815|gb|GG669606.1| GENE 247 271058 - 271684 203 208 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1895 NR:ns ## KEGG: Lbuc_1895 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 208 1 204 204 176 61.0 4e-43 MNKHDNEPQYKKYDFNSEQTRSSQRKRQYSGWWFALLILIIALGIAVSLSWFLTRDSSKS SNRSSTNNISRTIKKSESALKNRKTKGALTSKLESNRVNSFKKQLNQADNNGITRQQRSQ LQERINQESNQSVKSKEQSLLNQTQSRSNQPPKKPKAADPFATSHTFSSIQDAKNWANAT KEEWLKAGYVNYTITSNGQGYYTLKFVK >gi|238617815|gb|GG669606.1| GENE 248 271785 - 272234 377 149 aa, chain + ## HITS:1 COG:SPAC11D3.02c KEGG:ns NR:ns ## COG: SPAC11D3.02c COG2153 # Protein_GI_number: 19113711 # Func_class: R General function prediction only # Function: Predicted acyltransferase # Organism: Schizosaccharomyces pombe # 7 145 9 146 150 127 48.0 5e-30 MTKIETKTFSELTNRELFDIYKLRVAVFVVEQKCPYQEVDDDDLISYHLTFRDDTGDLMA YLRIIPDEKETIARIGRVIVAKDYRGKGLAKQLVQKALEESVRLIPNANKIVLAGQAYLK DFYHSFGFHDVSDVYLEDDIPHIDMEKSV >gi|238617815|gb|GG669606.1| GENE 249 272645 - 273568 719 307 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509725|ref|ZP_03939774.1| ## NR: gi|227509725|ref|ZP_03939774.1| hypothetical protein HMPREF0496_1888 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0497_1791 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0497_1791 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0496_1888 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 307 1 307 307 621 100.0 1e-176 MTDSVFDNPNFEKIRPKMDDAIDSLITRVNSFSDRVVVSRTTPEYREMMLENDGIMFYLP TLAMGDSLHFDDDFSKEQLAQSRLFLDVGFTPVGKDISYMNMLVSLEKVYSGVPLDIIQD EHATERLYGGIAAVNQSDEPLGLAIPLGFPRGRRILVHIGEHWQIANKEMQTVTADFERF FLIDHSTEKDGFPLIAGLNDFLPETRPDCISTFVRELVKHDPEELQTYLRINHLPKYFEK VGMFVNYQGALQFGLPKQGIEKHFNTSELNRYNGDVRGSSYDEPDEVMPPQIKFRSMTEV CRRLIEE >gi|238617815|gb|GG669606.1| GENE 250 273877 - 275232 996 451 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 14 438 5 438 447 388 44 1e-106 MADKNEFHDDRAILDIHDMPPFWPWVGLSLQHMFSMFGSTVIVPLLVGLSPSIALFASGV GTLLHIMITQRKIPAYMGSSFAFITPMYALMHTAGYPAVGQGIVGVGIVYMIVAGIIWAI GSDWVDKILPPIVVGPIVMVIGLSLAGSAAKDAMMKGTHYNLEYFIIALVTLFLAIGFNM LFKGFIGLIPVLLAIVCGYVISAIFGLVNLHAIAVAPWFKMPAFEIPGLSYHFKLDWAAI LSITPIAFVTMTEHMGHIMVLDELTNRDFFKDPGLNRTLAGDGAASLFAGLVGAPAMTSY GENIGVMAITKIHSVYVLMGAAGFAILFAFVNKLNVLIMQMPLPVIGGISFLLFGTIATA GIQVMVENKIDMGLKRNLMIASTVMVIGIGNAYLQLGKFQFTGLAFATVIGIVLNLILPQ KAASEREHEAKLALDKKLHEVSEDVTGQDKK >gi|238617815|gb|GG669606.1| GENE 251 275332 - 275820 434 162 aa, chain + ## HITS:1 COG:SPBC1271.07c KEGG:ns NR:ns ## COG: SPBC1271.07c COG0454 # Protein_GI_number: 19111935 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Schizosaccharomyces pombe # 1 162 1 163 163 105 36.0 3e-23 MEQPNAQITYRHAKTSRDFEIAKALFIEYGQSLHMDLSFQNFDDELNELPKRYGGSTGDL ILAYVDQQLAGGIAIHRFESGVAEMKRLYVRTQFRSLGLGHELVARILASAQSMGYKTVR LDTIPQMKAAQKIYREAGFKEIAPYRYNPVAGTIYLECSLDE >gi|238617815|gb|GG669606.1| GENE 252 275894 - 276322 392 142 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509728|ref|ZP_03939777.1| ## NR: gi|227509728|ref|ZP_03939777.1| hypothetical protein HMPREF0496_1891 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0497_1794 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0497_1794 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0496_1891 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 142 1 142 142 243 100.0 3e-63 MQDKKIYRVLVTSMIALGGVIALQTPTMAAKWTSGMPKILKGTFTSRYSKNGGFYPTLSV DAKGVTIKTLPKSTTTIEKVSYRRSTPVSYLVKGTYKNGGQTYLRMMFGPYQGKTRISYK SSHLVNGQLKWTKHYAGWFYQK >gi|238617815|gb|GG669606.1| GENE 253 276420 - 277106 470 228 aa, chain - ## HITS:1 COG:lin1979 KEGG:ns NR:ns ## COG: lin1979 COG0517 # Protein_GI_number: 16801045 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 20 221 2 203 209 149 40.0 3e-36 MINLSIKCLSTDLNLKFGEITLELTPRQEQIINIVKTAQPITSQRIADKLQLSMPTIRTD LRLLTAFGILDAKPKIGYTYDESPDKVLNYQQLFETSISEILQKPTKIMEAATLTEAVNT LFIEDVGSLYVVDEHLHLVGLISRKDLLRATLNNTNASLTLASTVMTRMPNIFTVTPDMP IIKAGQLLLDRKVDSLPVVDQNDHQKVIGKITKNRIFQHFIKIGLAKK >gi|238617815|gb|GG669606.1| GENE 254 277317 - 279974 2169 885 aa, chain + ## HITS:1 COG:lin1981 KEGG:ns NR:ns ## COG: lin1981 COG0574 # Protein_GI_number: 16801047 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Listeria innocua # 2 876 3 877 879 942 52.0 0 MKYIYTFEESNKDMRRLLGGKGANLAQMTNLGFPVPSGFTISTEACNAFYKNHNQLNDDN LDQIKEALDQLSQKVGKSFDSPSAPLLVSVRSGAAISMPGMMDTILNIGLNDQTVAALAK ITANERFAYDSYRRLLAMFGNVVEGISEATFDMVIENLKQQNHYQSDLDLTTDDLKQIVS EFKKIYMNELHREFPQDPTEQLLAAINSVFESWNNHRAKIYRRENNIPSFLGTAVNVQMM VFGNAGKDSGTGVAFTRDPATGEKQLFGEYLLNAQGEDVVAGIRTPQPISTLRETMPHLY EQFVAIAAKLEFYYRDMQDLEFTIENGKLYMLQARDGKRTPTAAVKIAVDMVDEGLISRQ EALMRIKPESVQAILYPEFDEQELAKNDIVASGLPASPGAATGRVYFTAEAAKAAHDEKH QAVILVRQDTSPEDIEGMVVSEAIVTSRGGMTSHAAVVARGMGTPATVGVNHLQVDYQHK TASFSGHQLHEGDWLSVDGTQGNIYIGQIKTTDMAVNENLSTLLGWAKQESHLGVYANAD TPADFSQALKFDADGIGLARTEHMFFKPERLLEMRRLIIAENAEARKLPLKRLLDMQQGD FYGLYKLSEGRSVTIRLLDPPLHEFLPHDEKEIHEVAAQLDIEPAYLAQRVDALKELNPM LGHRGDRLAVTFPDIYQMQVRAIIGAALQLLDENVIIEPHIMIPLTGSKAEMSWVRELVV KQIEQLFDEKNARLQYTVGTMMEMPRACLTADKVAEVSDFFSFGTNDLTQLTFGFSRDDV SSFMPEYIKQGILPADPFQTVDVEGVGQLMKMAVEKGRFTKPRLPIGVCGEIGGDPKSIE FFEQLDVSYVSCSPFRVPVARLAAAQAHLRNKRVVSQSVSVNPVR >gi|238617815|gb|GG669606.1| GENE 255 280119 - 280670 583 183 aa, chain - ## HITS:1 COG:L114370 KEGG:ns NR:ns ## COG: L114370 COG1846 # Protein_GI_number: 15672690 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 33 133 42 142 291 74 40.0 1e-13 MTDKNDLLRKIFGFLHGSQRLARHSARPYQLRGQHRVLHVLAKEGSLIQSQLAEILDIRP SSLTELLSKLEDRGLINRTPDENDKRVTNVSLTDEGKKAIESDDSSSDDLINSIFDGLSD EEIDQLNGLFDKLNGSLKEKLPARDERPDGFPGHRHHHHGFGGPGFGGPHGGPHGHGFDR PRF >gi|238617815|gb|GG669606.1| GENE 256 280871 - 282220 1457 449 aa, chain - ## HITS:1 COG:SPy1542 KEGG:ns NR:ns ## COG: SPy1542 COG0624 # Protein_GI_number: 15675440 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pyogenes M1 GAS # 1 444 1 441 443 439 51.0 1e-123 MQKIVTETQQNQAVDALKRLVSKPSVHDDDTVTETTPFGKGIDDALTEVLKIADENGFKT YKDPKGNYGYAEIGSGDETFGIIGHVDVVPTGDPNDWDHNPFDATVVDGHIFGRGTQDDK GPSMAAMFAVKALVDQGYHFNKTIRFIFGTDEETLWRDMKVYNKNEKPINLGIAPDAEFP LIYAEKGLEQAYLVGPGQDDLTVDLQGAFNAVPAKASYNGPKLVEVKQALDVHHFKYENN GADGITVLGKSVHAMNAPQGTNAVLRLAIALDEVFPSKTLDFLGKLFKEDATGTNVLGNI EDKQSGHLTFNISSLKIDKQETRMQIDMRIPVTVDRDDLIDKLKTAVDPYGLHYEAFDYL APLYVPTDSHLVKTLMATYKDLTGDDTQPQISGGATYARTMHNCVAYGAMLPGTPDFMHQ VNENWELKSMFKAMDIYAEAIKRLCVDDK >gi|238617815|gb|GG669606.1| GENE 257 282387 - 283907 1442 506 aa, chain - ## HITS:1 COG:SPy1543 KEGG:ns NR:ns ## COG: SPy1543 COG1288 # Protein_GI_number: 15675441 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 10 489 6 480 497 523 58.0 1e-148 MENKQQATPRKKFKMPSAYTILFLIIILVAILTWIIPAGQYSTDKAGNIIAHTYKAVASN PQGIWDVFTAPIYGMIGNDHTEGAISISLFILVIGGFLGVVNQTKALDDGISSVVSKYKG KEKILIPLLMILFALGGSTYGMAEETIAFYPLLIPVMIGVGFDKMVAVAIVLVGSQVGCL ASTVNPFATGVASQTLNISPGDGILSRIVLLIITVAISIFYVYRYASKIEKDPAQSIVFD QREDDLKRFALDHKDQSGAKMSGRQKAVLWLFGLTFLLMIIGLIPWDQINAKWTFFASFT KWLQGIPVLGDLIGSNLVPFGSWYFTEITTLFFLMSVIIMFVFKMKESTFVDSFLNGMGE FLGVAIIVAVARGIQVIMNDGNITATVLHWGEMGLSNLGSVVFIILAYIFYIPMSFLIPS TSGLAAATMGIIGPMGKFAGVDPSLVVTAYQSASGWVNLITPTSGVVMGALAIANVNITV WWKFMFKLMIYLFLTTAIFLGVMALL >gi|238617815|gb|GG669606.1| GENE 258 284338 - 285174 842 278 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0628 NR:ns ## KEGG: Lbuc_0628 # Name: not_defined # Def: peptidase M10A and M12B matrixin and adamalysin # Organism: L.buchneri # Pathway: not_defined # 22 278 16 275 275 222 50.0 2e-56 MGKKEWLLSLAVTILLAPTLPFAQAVLPDSVAVTQTVAAKSKATSRSTVVSAIKQTPDLN PTAKVRHFSQATYAKYGALFDKNYNVEKMSPYSVFGDAQEAYVYTSSPILKRYMYAAMQN WNKALGTKVFNLGTKSHKTITVKWKYNGASEEWDGMYQDNSLWINKDDFDNVNYVPNTYQ AALNKEMPGAGNPNSSTYKQQYINYWIAIITHELGHSLGLDHSPYTTDIMFSDSETAGPD FKYTWKRAKVDGSYAEFKNSLSQRDINRAKLTKLLGYW >gi|238617815|gb|GG669606.1| GENE 259 285360 - 286322 836 320 aa, chain + ## HITS:1 COG:CAC2945 KEGG:ns NR:ns ## COG: CAC2945 COG1052 # Protein_GI_number: 15896198 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Clostridium acetobutylicum # 1 320 1 324 324 344 52.0 1e-94 MKIIDLDGFALNPGDLSWDGFKQFGDFKNYDRTEENDATILERIGDAEIVLTNKTPLDKK VINEAPKLKYIGVLATGYNVVDIAAAKDNNVVVTNIPSYGTDAVAQHTFALLLEITNQVG LHSEAVRNGEWSSATDFTFWKTPLISLTGKTLGIIGYGHIGQATAQIAHSFGMNIIFYNH HEREVSEDWLKQVSLEDVLTKSDIVSLHTPQTPQTEEMINQATIAKMQDGVILLNTARGG LINENDVANALNSGKIYAYGADVTTQEPINADNPLLTAKNVFLTPHIAWAATEIRERLMG IAVENLKAFIAGQSRNVVNK >gi|238617815|gb|GG669606.1| GENE 260 286428 - 286940 375 170 aa, chain - ## HITS:1 COG:FN1248 KEGG:ns NR:ns ## COG: FN1248 COG4283 # Protein_GI_number: 19704583 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 1 169 25 202 204 168 49.0 4e-42 MARPQTKRALLSQSQDNFKKMSSLIDQFTPEQEQQIFSFEDRDRNVRDVLIHLYEWHQLL LNWVEENHVNHHQADFLPVPYTWRTYGDMNVQLQKKHQDTSLNDAKAMIAESHTKVMTLI NQFSDEALFTKRYFPWTGTTSVGSYCVSATSSHYDWALKKLKKHQRTLKE >gi|238617815|gb|GG669606.1| GENE 261 287036 - 287809 188 257 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 25 231 16 217 245 77 27 1e-12 MTEPIFELKDIVVTVNQGTPEQINIMDHVNFAIYPGDFITILGSNGAGKSTLFNVIGGNI RVTSGQILLHNRDITNMSVERRTRFLSRVFQDPKMGTAPRMTVSENLLLSMKRGQHRGLG PRGLKQNMAQFKELTSVMNNGLEDRLNTATGKLSGGQRQALSFLMATIKRPEILLLDEHT AALDPQTSQELMNATNNQITTNHLTCLMITHHLDDALKYGNRLIVLDHGKITYDISGSEK DHLTKEELLGFFNEIES >gi|238617815|gb|GG669606.1| GENE 262 287802 - 288701 951 299 aa, chain - ## HITS:1 COG:SPy1018 KEGG:ns NR:ns ## COG: SPy1018 COG4120 # Protein_GI_number: 15675019 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 3 285 1 281 289 267 57.0 2e-71 MSIIVSAIGQGLIWGIVGIGLFLTFRILDFPDMTVEGTFPMGAAACVAAIYHGFSPLTAT LIAFGVGMIAGFVTGILYTKGKIPVLLAGILVMTAAYSVNFRIMDRANLSLFDKPSLLTG KFMDSLPNYFNSVVLGLIFVTVVSLLIIYFLQTNLGQAFIATGDNPTMARSLGISTDAMQ IMGLSVSNGLIALGGALVAQNNGFADVNMGIGVIVVALASIIIGEVVFGDLTMNERLIAV TIGSILYRFVILIVLKLGFNANDLNLISAIVLALFMMFPVFEKRFRIRQTLSRGLSKHD >gi|238617815|gb|GG669606.1| GENE 263 288698 - 289699 1105 333 aa, chain - ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 5 327 23 341 344 255 44.0 1e-67 MRKKLTILGVIFIIFAILGYAYFDNQKKQQSQSKPTIGILQLMSHPALDSIHKGIIAGLK DEGYTPGKNIKIDFQNAENDQSNLKTMSTKFANENADLTIGIATPAAQALANTMKKSPVI LGAITDPKGAGLVKNNQKPGGNITGVSDQAPLKEQLGLIKQFMPKMKTLGIIYTSSDDSA VAQYKKFVVLCKQEHIRLKAYSIANTNDLTQVAEQAAHSVDAIYVPTDNTIAGAMQTLVG AADKAKVPVFPAVDTMVKAGGVATYGINQYELGVATGKMSAQILKGKKKPSTTPVKFFRH GKLIINQKQADKLGIKVPANLLKEAQQKGEIIK >gi|238617815|gb|GG669606.1| GENE 264 290408 - 291226 734 272 aa, chain + ## HITS:1 COG:HI1080 KEGG:ns NR:ns ## COG: HI1080 COG0834 # Protein_GI_number: 16273008 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Haemophilus influenzae # 23 270 11 256 257 166 40.0 3e-41 MKLKLALKRSLLVVGIALAGVALTACGSSSSSSKNGTYRSELKQSKQLTIGLEGTYPPYS YRKDGKLTGFEVELGKAVAKKLGVKANFVPTKWDSLIAGLGSGKYDVVLNNITQTPERRK QYLFSKPYVYSRYVLITRSGSNAIKTTADIKDKKFAEATGSDNELIAKKFGAVIVPQEQF QTSLDLIKQGRAQGAINAESALLTYAKDNSIKGLKYRLLKDSEQKPAKISGLFNKKSPKL KDKFNKVLDQLRKDGTLKRLSQKYFSKDITTK >gi|238617815|gb|GG669606.1| GENE 265 291270 - 292298 994 342 aa, chain + ## HITS:1 COG:ZyedO KEGG:ns NR:ns ## COG: ZyedO COG2515 # Protein_GI_number: 15802354 # Func_class: E Amino acid transport and metabolism # Function: 1-aminocyclopropane-1-carboxylate deaminase # Organism: Escherichia coli O157:H7 EDL933 # 6 335 40 357 360 198 38.0 1e-50 MTVCKQLPKEKLGFFPTPVHRLDRLSKQLGINLYLKRDDFTGPNLFGGNKIRKLEYLLGD ARQKGADTVITFGATQSNHAMETAVAANRLGLNTILYLETITPNDQQDDRANILLDKILG AQIHYVSMKGRTEAQADEISMQQALVEKKHLEANGHHVYIIPVGGATPIGSVGFVLGFKE LVDRLPDVAIDYVVHGSGTGGTAAGLIAGAKVFSKEAHPTQILSINVSPKPESHYQKVVD LGNDALGLLDLETRISLTDAHFDQSYFGDGYEIPSEAGSNAIRLLARTEGILTDPVYTGK AFAGLLDYVRTGKIKPGSNVVFWHTGGVSALFAEHKIVGEIV >gi|238617815|gb|GG669606.1| GENE 266 292546 - 293679 1028 377 aa, chain + ## HITS:1 COG:BH2011 KEGG:ns NR:ns ## COG: BH2011 COG1062 # Protein_GI_number: 15614574 # Func_class: C Energy production and conversion # Function: Zn-dependent alcohol dehydrogenases, class III # Organism: Bacillus halodurans # 4 371 2 364 366 313 45.0 4e-85 MAKQITGAVIEKLNAEFKLESLEVDDQPKAHEVLVHIVASGICHTDEAVRNGSAGEYPYP GVVGHEGAGIVEKVGSQVSTVKVGDHVILSYDYDGTCHNCLTGHPSSCINWAKLNMAGTR PDGSFAFTRDDGSPIHNFFNQSSFTTETLVQERNVTVIDKDIDLRKVGPLGCGFVTGSGT VFNGLKPKEGDTIAIVGTGAVGSGALMAAKIKGCSKIICVDIHDSRLEMAKELGATDTIN SLKENWVDKVKELTNGEGVNFAIDTTGISAIMHQAITALASGGHLAPIAVTAKTLEFMPW NELTALQKHVDGVLMGDAIPQLALQKLINFWKAGQFPFDKLEKFYTFEQINEANKASNDG SVIKPVMIIDQDYKPGE >gi|238617815|gb|GG669606.1| GENE 267 293831 - 295663 1253 610 aa, chain - ## HITS:1 COG:SPy0902 KEGG:ns NR:ns ## COG: SPy0902 COG0154 # Protein_GI_number: 15674924 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Streptococcus pyogenes M1 GAS # 63 521 6 475 484 261 37.0 4e-69 MKKQGIFTSYLKKSFLLGASVVLLGFVTESSLTIKADTPTTTTSVTNKSAPDISNATYYK SSATQLAKMVRKGQVTPTQLIAHAVAKIKADNPQLNAVISMREDQAIQEAANLKDTGQPF YGVPLLIKGLGQPISGSSNTDGLIALKNRTATTTSSFVQRLQSMGFIVIGQTNFPELGLI NITNSTLNGVAHNPWNHADNTGGSSGGAVASVADDIVPVATGNDAGGSLRIPASWSGVIG LKPTQGVIEGDDTTPSTVNFADAKNIQDLQTLFDGLLSTSDHSGANMLKAVPSHLKKVPI AYSTKSPVNTPVSKDAVNAVKQAVTFLKSKGFKVVHVNSPVDGVKLMHIYYLESTGTGTD ANKLVKSALGRDMTFDDVSPMTWALYQADQKQPTNVDSIVNNEFNLVNQQMTAFHQKYPL YLTPTTAVTAPKNTDPAYLPEYVEKLKTIGNLDHDQQIQTIYDAWLHGLTKTPFTQLANI SGEPAISLPTYVSKQNMPLGIQFEAAKGEDKLLLKLGAYFQDHNQFKFLDNYKQSQTSST KPKIAIAKTQLTLYKDKNLTKRVKTYPFRSKQSAHHFKLLGTVFSTNGATRYQVKGGYIT ANPKYVTIKK >gi|238617815|gb|GG669606.1| GENE 268 295763 - 296464 624 233 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0118 NR:ns ## KEGG: LDBND_0118 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 6 232 57 290 292 148 39.0 1e-34 MTFKDFKAICKNSLFPSFLKQLKANPETTFQQYIAKDHYEVPIHRVGDHPQTISLKKANV TASQTDNSSTDQSDYQMEPGDILIIYGTSSFKEAKIFGHCAIAISSNDILHMPGMNLGTQ QWTKKRFFDYYTGRGSYIEVYRMTSHPEYAKEAAQYAYNDMYKTDSPVYNLEPWLYQKEK SYCSKYVYLAYWFGAAHAALKRFVTGFHYIMPHHLIYDFSSGYSPADIYKVTE >gi|238617815|gb|GG669606.1| GENE 269 296748 - 298463 1104 571 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0544 NR:ns ## KEGG: Lbuc_0544 # Name: not_defined # Def: lipoprotein # Organism: L.buchneri # Pathway: not_defined # 414 568 516 668 672 130 46.0 1e-28 MKAKYFMIYIILFLLFISSMAMTSLNSIEVYADTSKSSNAGYKNLLNADSGVGNIENINN DIDNYTPNSSHSYDNRLKSEVFYINLTANFESGGEITISPDYSNNPGSDVPAIIGNAYVY NSDSKETVPLYTDNTTSTPSNNGFSMIKSGNDYKISIPRNDKISNYTIVFTILPLTSGNS VELHPSYGADLTAQNNDGNVDGSAYSNEHGWGILWGQMENSSTPEMTSSATVTQGDQIPL SSFVKDYKATENQQFVIRDSEGKLLKTTSKSVDNWTNLPVGKYYLTYYTQDQNNDNIWNT TIITIKNPTPLPDTNTNTDTGKQNTTPTEPTPTKGTVITRYVDQDSTRIAPDHTQDGITG EPYKTTQESISGYTLSEIPGNATGTYTDGTVLVTYVYSKNASIAPSINNSQVPVKGEAVY AIKKIGLYKSPNFSKKNRIKWYGIAKRINRAEFIIRGYKRDKFGHLKYRVQQYNPYTQKY VNGTRGYISSSSKDVISAYYALVPKRQKITIINKRGINSYKNQSLTKKVSHHKRGETLLV KKIIQYKLSTRFILANGSYITANKKFILTEK >gi|238617815|gb|GG669606.1| GENE 270 298820 - 299386 253 188 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509746|ref|ZP_03939795.1| ## NR: gi|227509746|ref|ZP_03939795.1| hypothetical protein HMPREF0496_1909 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1909 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 188 1 188 188 353 100.0 3e-96 MLYMKCIGETEMRNNELMMYLELAFINYNEFAMKHCNLSFFTREINSEVTVYTVPESEIF FLPRDLPKILRYITQYEDENMYSLDVIDDLRLLLRKIRKGGLRDYPQKAVNSLNVAVDNI LCNSIDLNKQTKYYRVVSTNEKEVELIEIANHDGKPIFSVTRGKSIKVKVTHNAIILNGR LLVRYVHR >gi|238617815|gb|GG669606.1| GENE 271 299533 - 300666 1020 377 aa, chain + ## HITS:1 COG:L0327 KEGG:ns NR:ns ## COG: L0327 COG0420 # Protein_GI_number: 15673304 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Lactococcus lactis # 1 360 1 375 390 272 41.0 8e-73 MRFLHTADWHIGRRLHGFDLTDEQNHAFKQIEQIALNEHVDGVMIAGDLYDRSMPAEASV AQLNHMLQQLNLVDKLPIYAISGNHDSAIRLSTGTPWFKSTQFYMHTRLDQAFTPVELPD TQLFLLPYFEPFDAQQYFNDDSLQHLDQAFVPIVNKMKSLFDPNKKHLLISHFFVDGSAT TDSETQLKVGGLAAVPVGLLEGFDYVALGHLHGKDALHAENARYSGSPVKFSLSEANQKK GVFIVDTEPFKLTFKPLTPIRDVQQLTENFETLADNHFYEHLKLDNYFGITLKDRKPIPN VMARLRDIYPNIISLDRADGYETDIEDSGESGEQIRQKDPMDLLGDFYKQVAKDELSSQQ IKWAQEALKIADNGGIK >gi|238617815|gb|GG669606.1| GENE 272 300666 - 303803 2373 1045 aa, chain + ## HITS:1 COG:L152588 KEGG:ns NR:ns ## COG: L152588 COG0419 # Protein_GI_number: 15673303 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Lactococcus lactis # 1 1043 1 1044 1046 281 27.0 5e-75 MKPLKLTLKNFGPYENETIDFTKLDEASVFLISGKTGSGKTTIFDAMTFALYGDSASDDR TPQSMRSDFADTKAPTEVTLLFEHQGQTYRINRFPKQELDKKRGTGTKIFESSGKLEIFK DGKKADEMTKMRDINLKLLDVLQISREQFVQIVLLPQGEFRRFLTASSSDKEDVLRKIFR TQLYQRWSDALRDMLKKQNTKNKDAKQAIDNDLAKVVWLDDAPDDVKARNVSDQIVILSQ QQGQANTALKNLKAQHQSAQKRYEEANQKFHADGEMNQQINQLADQRHQQVDLKALQPQY DQLREQVAQLEWAKDLKPKYEQFQELQSDVSNDQRKLKEVNETSQTRTKALEKQSKQQIN LQAKKPEQEQRLSQKSVLENQRPIFKQASELRDQLKQAKAVVEKTGRKLEAKQKRVSDLT KQNDQITEKLTQVVGLTEQLNELTQTAKTLETASKQLTKLDLDQQTNHELKVRIRQSQNE LLKLTAQVDHAQTAYTALRNNWLSNQIVNLVKQLEPGSPCPVCGSTDHPSPAHVADLPSV SDDDIKTAEAHLQQLQNQQATDRTKINEQVKQSDKQDQQINSTFKELVAELMAEHILQET PDSLAAVSQQVADDNEKNLRERHVIQKQQDDLKAEQEKQVHIKQDLDQLMPQVDQLKADY QNAQSTQQKYDVQLDDVAHRLPSEFSDLASLDQHLGKLQQAIADYDQAVETNRNQLEDTK RTLAASQATEISLKKQIDHTREKIDTIQNDITAAVLKKFGTKSWDMLEKSVKNVSQLADL QKQIDHYQDQLKNVAASISTYEKIVGEHQLVDLKEEQTQLAQLVQARDQLQDQYDEKYRQ TLINDELLKRVKKNDHAIHDQQETINQLQLLVETVNGSGDAKLGLERYVLQAQLKEILKV ANQHLKQLSSGRYAMQLHKEAGAYQKNTGLEIDVYDDNVGQLRSVHTLSGGESFIAALSL ALALGEVIQNESGGISIDTLFVDEGFGSLDQESLSMAMAALENIESHNRMIGIISHVTML QERIPYQIQVQTEGQGKSRTKIVAP >gi|238617815|gb|GG669606.1| GENE 273 303970 - 305193 1134 407 aa, chain + ## HITS:1 COG:SA0311 KEGG:ns NR:ns ## COG: SA0311 COG1902 # Protein_GI_number: 15926024 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Staphylococcus aureus N315 # 8 399 3 396 399 456 57.0 1e-128 MAQTTTTKYAPLFMPITLPNGIKLANRFSLNPITLNASTSEGYISDADVAYAKRRVNSAP LQVTTAAYIEEYAQLFEYGPSVRDDTYIKGLSRLATAMKSGGAKAILQLTHAGRFARISL KDFGVVYGPSGMHLNSPVKHDVLAMSKRKIKHVVSQYANATRRAIKAGFDGVEISNAQRL LPQQFFSKFSNQRTDEYGPQSIENRARFGVEVMQAVQKVVDDEHAENFIIGFRGTPEETR GSEIGYSVDEFNQYFDRLLNVADVQYFAIASWGHNIFRETVRSDKHKGELINDVVLRHMR GRVPVIATGGINSADKAVEASEHADMVGASSMFITEPDFVSKLKAGREDDIDLTLTKEKW ADLAIPANAFKDIVEFMDFGGSLSKKTRDEIRSETNQSDVDYFNKYQ >gi|238617815|gb|GG669606.1| GENE 274 305212 - 305544 404 110 aa, chain + ## HITS:1 COG:SA0313 KEGG:ns NR:ns ## COG: SA0313 COG0509 # Protein_GI_number: 15926026 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Staphylococcus aureus N315 # 1 110 1 110 110 107 51.0 7e-24 MKKRGDYLFVDENNGVYTISLTPELQDDIGTVGYVEFKNEKAVSKGDALAKLEASKTVLD VPSPLAGKVVEKNTKLQDDPKLLNSPDDSQNWLVKLKDVDESAFNQLKGA >gi|238617815|gb|GG669606.1| GENE 275 305632 - 306378 442 248 aa, chain + ## HITS:1 COG:SA0314 KEGG:ns NR:ns ## COG: SA0314 COG2110 # Protein_GI_number: 15926027 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Staphylococcus aureus N315 # 4 245 2 261 266 201 45.0 1e-51 MQQERLKSANVRPEVISDDATAQKRLLRKLFNLRGPAPASDSFMRVQDRYLFNENHVASI IYQSDLDMIRPKIYLWQGDITQLAVDAIVNPANSRMLGCFIPNHGCLDNQIHTKAGIQLR LADQKAMAGERLEATGKAKLTPGFNLPAKFVIHTVGPVIIHQVTPLRRQLLADSYQSCLK LAEQKDLSELAFCCISTGEFRFPHDLAAQIAVNTVNDYLSSHINAPDVIFAVNSDLDKAL YLHELEGE >gi|238617815|gb|GG669606.1| GENE 276 306381 - 307253 457 290 aa, chain + ## HITS:1 COG:SPy1215 KEGG:ns NR:ns ## COG: SPy1215 COG0846 # Protein_GI_number: 15675179 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Streptococcus pyogenes M1 GAS # 8 287 4 283 293 300 53.0 2e-81 MVQATQIWKSLGQTGSQADQLRALIDEAEATVVGIGAGMPAADGFSYVGPRFETHFADFI QKYHFYDMLQAFLADFEDWSEYWAFESRFVLLNGIEQPEGKLYHHFRAFMDHGDRHYTII NTNGDNTLEKAHFDRNRIFNYQGQYSRMQCSKFCTPVTYRDDDLIRKMVREQKELRVPES LIPKCPNCGAPLEVNKRTDAGMVEDEEWHREAKNYHDFLDRWHGRKVLYLEIGVGNTTPW IIRKPFWKMTRENPNALYVMLNQKDYQIPEELQGQSLRLNQDMTQVIGHL >gi|238617815|gb|GG669606.1| GENE 277 307266 - 308312 933 348 aa, chain + ## HITS:1 COG:SPy1214 KEGG:ns NR:ns ## COG: SPy1214 COG0095 # Protein_GI_number: 15675178 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Streptococcus pyogenes M1 GAS # 1 341 1 338 339 377 53.0 1e-104 MYVVELKRNGKRIYDGALALASQVWCMNHLFLDEPILFPYNCDPKIEIGEFQNARQEINQ QYVDDHHIQVVRRDTGGGSVYCDRHGINFCFLADAATPDLYGNFAKMYRPGIEALQSMGV KNIEDSGRNDLTIDGKKISGGAMAIVNQRIYGGFSLLLDIDYESMVRSLTPNEKKLISKG IRSVKARVTDIRSHLASDYQDLSPEAFMHIMTKKIVGAKTDDDIKYYELTTADWKQIDAL AAKKYKNWDWNYGAAPEYKYEHDTHLDSVGTVEIYVDVANGRMKDCSIYGDFFGKDDHQA LLNTLIGTKMRREDLTDALKAVNLNDYINGLKAEQLVDLILGQSMPAR >gi|238617815|gb|GG669606.1| GENE 278 308562 - 309002 98 146 aa, chain + ## HITS:1 COG:no KEGG:LCAZH_1112 NR:ns ## KEGG: LCAZH_1112 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_Zhang # Pathway: not_defined # 1 141 46 187 190 93 39.0 3e-18 MDLGGLTDNEVKELLQSLKRCTRQIPEDMPLIGRIKDDTPVVDFKNHIEYFLHRYRNPFD SKRFSLHIRFQQTNDHLIRIDIHNGTHRNPDGTLIPENHMHVYHFVKGLRKDVIAIPLPA EIHNITSLFAALEDFLAYTNVTEYPK >gi|238617815|gb|GG669606.1| GENE 279 309022 - 309798 589 258 aa, chain + ## HITS:1 COG:no KEGG:LJ0291 NR:ns ## KEGG: LJ0291 # Name: not_defined # Def: Lj965 prophage protein # Organism: L.johnsonii # Pathway: not_defined # 1 256 1 259 261 160 37.0 6e-38 MITIDNLEKSVNDFNKKSITFSNTDQNYIRIDTPFFDRHNDAIILYASEVEGNVRLTDAG YILDDLESDGMFITRSRKRMTILKEQLKSYSVKFNEVTHELYVDANISDYPVKQNLLIQA MLFVNDMFMLSKERVSKLFVNDVAEFLTENDIRAYDGPNLIGISGMVLHYEFSIAGIRDI PDKLIRVLNTPHNEYYAKTVAMDVRQTVPVVKRKTDFYAFVNDEEAPVDDTIVNLFNSES ITTVPFSKRNEFVKRLAE >gi|238617815|gb|GG669606.1| GENE 280 309834 - 310046 279 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509756|ref|ZP_03939805.1| ## NR: gi|227509756|ref|ZP_03939805.1| hypothetical protein HMPREF0496_1919 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1919 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 70 1 70 70 80 100.0 4e-14 MGLILFLMFGWIYLLFRMGFSLLRFFGGFIGLILIFFILTKVIIWGFWLTGVAALAFFGW LAYRFISSRV >gi|238617815|gb|GG669606.1| GENE 281 310141 - 310482 271 113 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1262 NR:ns ## KEGG: Lbuc_1262 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 107 1 115 120 87 46.0 2e-16 MQNKKHLTGPQIVGWIIWWFVTILILLVLVAIMVFNPHSWITNTVAVIFGTLYVIQQIIM IFCLKRLHRNDNYAWPIVAIVVGVLGSILYIIPGIWALMINNSAQNRHRNTIN >gi|238617815|gb|GG669606.1| GENE 282 310581 - 311399 376 272 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1261 NR:ns ## KEGG: Lbuc_1261 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 11 272 2 262 262 170 34.0 5e-41 MTCIGDEDMPVDVTFDDTFSGLLRYYYRKKHVKQRILTLPLSLDFGNIKTANIVRTRASF LEELSRNTHGYSVKEEIQKIRDNLSFLEVLIESGTSFRIWWTNKAADYCGFIWLCDRLKT VENEVEQIKVPTLFPRENQTLLEINEGLSGLSCDLIDEFKLFERQQKLSASIRRDYSYMW QELQEENQPIRVLINDHLLSQPVTFYDKFIYQQTSKTDFTELDRLLGKIVLHYGVGILEG WYWYRIEKLIDEEKLEAKQSKIPMKQLIRLRK >gi|238617815|gb|GG669606.1| GENE 283 311741 - 312859 778 372 aa, chain + ## HITS:1 COG:lin1848 KEGG:ns NR:ns ## COG: lin1848 COG0371 # Protein_GI_number: 16800915 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Listeria innocua # 2 359 6 359 368 259 38.0 6e-69 MIISRIGPQQYLSNLDAYDYLPKYIKNNDYTRVLFLHGVKSLNAAKPYLPAWDPEVTVHD IYFNGECSPEEIARIRGLVRDNDIQLIIGLGGGKVLDTAKSAAHYEHRPIVTIPTLASNC APWSCLSVRYKENGEHIDHEVYDNATNLLLINPKVILNSPIDYFVAGIGDTLAKFYESEL IFKDLEEKGPLNVALTISKQMSENCKDVLLKNSVAAVQDMKAGKLTDEWLSVVETIICTA GTVGGWGDEYSRSTGSHSVHDALTTFDETKPLLHGERVAYGNLVQLSLEKHFEEIQILLK LYGTLKLPRSLKELSFKNPSDKLVHAIAAETVTPEKAIHLLPFKVTEPDVAQAISQLEEI TDKYKASVAVGN >gi|238617815|gb|GG669606.1| GENE 284 313280 - 313675 357 131 aa, chain + ## HITS:1 COG:SPy0844 KEGG:ns NR:ns ## COG: SPy0844 COG3576 # Protein_GI_number: 15674878 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase # Organism: Streptococcus pyogenes M1 GAS # 4 130 2 128 133 72 35.0 2e-13 MANLSEEMKNMINEQLPFLATADENGVPKVGPKGSLQVMDDSHLLYYEHTFRHAYHNLKQ NAYAAVAVADRSAQKGFRFEGKSHIHEGDSLAKKILPPKIFDRFPRAAVVVIDVEHIYQL DNNLDAGTRLA >gi|238617815|gb|GG669606.1| GENE 285 314042 - 318175 2694 1377 aa, chain + ## HITS:1 COG:lin2744 KEGG:ns NR:ns ## COG: lin2744 COG3513 # Protein_GI_number: 16801805 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 12 1136 5 1126 1334 496 34.0 1e-139 MESNHDGEQVKYTLGLDIGTSSIGYAAIDKHQKPIRAKGKHVIGVRLFQEGQTAADRRAF RTTRRRLKRRKWRLNLLNRLFDPYLSEVDPNFLPRLRQSNLSPKDDNKHFNGSTLFPDKT DAAFYRQYPTMYHLRYALMTEKRKFDIREVYLAIHHIVKYRGNFLNSATVDSFKTSNIDF TSQFDRLNELYRQVILDEPFQINMDQVDEMTNKLLDNDALKLDTQKQVAKLLPVIYNDKP IDKQYTRIATEFSKAILGYKTKLDVILNLDTQNAKDWVIRLDDEDIDDKLPALVENLDES RQEIVTIIRDLYAQITLNAIVPKGKSLSESMVDKYNDHKDHLDLLMGLIHELGDDSAKGI KLREAYTQYVGKSDDKTLNQDDFYAAIKKNLDEDSKRSPKIQRLIEQASFMPKQRTSANG VIPHQLHQLELDRIIENQGRYYPFLKKPNPNTHKPNGGKYKLDELVAFRIPYYVGPLITK RDQEKTSGADFAWMIRKPGQEGEITPWNFDQKVDRMASANRFIRRMTTKDSYLVAEDVLP DASLIYEKFKALNELNMLKVNDSRLSPSQKQDLFNNLFKKQKTIRTKKLQTYIRTNWELP SVMISGLADPDKFNSSLSTYIDFRDIFGEKVDDPNRQADYEEIIEWSTVFEDRKIYQAKL NQLDWLTEPQRKALLTKRYTGWGRLSKKLLTGLKDQNGDSILDQLWKTNDNFMQIQSRDE FAKQIHDENAKQFHEANNVDDILDDAFTSPQNKKAIRQVDKVVQDVVKAVGYAPDKIAIE FTRSLENNPQRTVSRQRQLQAAYKNIPREIMKSGLMAELGSVADSKKVLSDKLYLYFTQM GKDMYEDKTINIDNLPNYDIDHILPQAFIKDDSIDNRVLISKEENARKSNRVPLKFFGAK RMGFWKDLLNNGLISNRKFQNLTTDPEKISKYSAKGFIHRQLVETSQVIRLVANILGNEY SQAGTTIIEVSAKMNRQLREDFHLIKNRNVNDYHHAMDAYLTAYVGDYLYLRYPKLRPYF VYGDFKKAEDQDLNIRNFNFLHDLKDNESLDKIVDSETGEIVWEKHGSVKQLKKVYHYKF MLVSQEVYTRQDALFNQTIYPASDADKRKLIPIKNSKPVDVYGGYSGNIDAYMAIVRVHG KKEDNYKVVGIPMRAVTKLKKAEKEGHDSYLNAVHEVLKPQFTKKKKNRKTGEITETVDE FDVLLGKVYYRQLIVDGNKKFMLGSSSYQYNAKQLVLSDKAMQVLSKNGKVKSQDENQNL IDVYDEILEKVDQYFELYDQRHYRESLHKGRGIFVNLPLSNQYDGSKLTSYGKYETIDAI LNGLHANATMSNLRYLGISSPFGKMQASNGLTIDPDSIICYQSPTGLFERQIKLSDL >gi|238617815|gb|GG669606.1| GENE 286 318380 - 319294 556 304 aa, chain + ## HITS:1 COG:SPy1047 KEGG:ns NR:ns ## COG: SPy1047 COG1518 # Protein_GI_number: 15675042 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 5 285 3 284 289 181 36.0 1e-45 MFILGWRSVIITQHAKLSYSSHMMIVQTNDGINQIPIDDISILLISTTRAVITTALISEL AQVGTKVIFTDGTNQPICETVGYYPNNRSVKLLQEQVNWDEQRKEVLWTKIVGSKMTNQV NVLAFYKKDTTEVNEELDKLEVADPSNREAVVARKYFPLLFNNDFSRRNGSAINSALDYG YSILLSSINQEIVSNGYLTYIGIHHRGEENPFNLGSDLMEPFRPVVDFWIASQKFDQLTP DVKYGLVQLLSMEIGFNGKSTLLKNALTEHVRNCLKYLSGKSNKIQIEVGFRDEVPNNAI NDNV >gi|238617815|gb|GG669606.1| GENE 287 319272 - 319577 179 101 aa, chain + ## HITS:1 COG:SPy1048 KEGG:ns NR:ns ## COG: SPy1048 COG3512 # Protein_GI_number: 15675043 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 101 6 106 113 82 40.0 1e-16 MRLMIMFDLPVDTAHQRREYRRFRKQLINEGFLMIQYSVYVRVCVSRQSANFMEKRVSTF LPEAGVIQSLMLTEKQYSDMHFLTGKPKEDVRNTSDRTVIL >gi|238617815|gb|GG669606.1| GENE 288 319574 - 320254 408 226 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1874 NR:ns ## KEGG: Lbuc_1874 # Name: not_defined # Def: CRISPR-associated Csn2 family protein # Organism: L.buchneri # Pathway: not_defined # 1 222 1 222 223 186 45.0 5e-46 MIISYASHQPVKVSNEQVTVIGTNSSVVYQDLLRGFRDGGQIKVCSDTYDELEVSKTIDL VGDVCTGGEEIERRYLSRITKAFLDDLTDPQRNRIHDSLNRLYNTVQEQLYMIDLPIEVT YDFDLKELTRFAKIHFDSGTANNPCAMIESILKVYEECHLKTTLIFTNVRQYLSIDQLRE IEAMIKEIRVSVVLIEFTEMEHQDFYGNADFYYIDEDFVDWHNANH >gi|238617815|gb|GG669606.1| GENE 289 321624 - 321869 209 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509765|ref|ZP_03939814.1| ## NR: gi|227509765|ref|ZP_03939814.1| hypothetical protein HMPREF0496_1928 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1928 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 81 1 81 81 142 100.0 7e-33 MFYQKLKLLRKKYQYTQEDLAKALNYTQGAINSWEHNISRPPLEIICQINRIFKVSTDYL ICKPESITLNSKKIRQRKHKS >gi|238617815|gb|GG669606.1| GENE 290 322070 - 322831 375 253 aa, chain - ## HITS:1 COG:all4978_2 KEGG:ns NR:ns ## COG: all4978_2 COG2771 # Protein_GI_number: 17232470 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Nostoc sp. PCC 7120 # 140 252 1 106 110 63 30.0 3e-10 MKTFSTNDLYVLNNIVHHIYCCKNPNQMREQLISQLSFLLDFDGSTFYLASPQNDQQLTS PVVVNIDPVFGQKYLACYDQLDYSKGLMFTGRSMTYRESDIIPDTQRIHSKYYQIFYAKY GFHYSLHSSIAFQGHFLGILSFFRTKGKPNFTQNDIELIGLLTNHLEARLFNDYQAACSC KNKLTLHDAALRYGLTKRQQVITRSLLDGMDNDEICAQLYITNNTLKKHILNVYRKLGIN NRVQLFKMVREKE >gi|238617815|gb|GG669606.1| GENE 291 323091 - 324152 876 353 aa, chain + ## HITS:1 COG:STM1222 KEGG:ns NR:ns ## COG: STM1222 COG0687 # Protein_GI_number: 16764577 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Salmonella typhimurium LT2 # 25 351 19 346 348 184 31.0 2e-46 MKRLKALLLSIVLVICLFILSGCASSHAAKHSKTLNVIGWSEYVPQSVLDQFTKETGIKI NYTSYSDPDQMLSKVLSSANGTYDMVLAPGMYVQVLRKLGRLDKLNKAEIPNYRNLSQTA LNEPYDKSNQYSAPYLGTVMGIAYNDKKVKTPITSYQDLLKPEFKDALVTVEDSRAVVGC ALMATGHKINDTSKSALSDASKYLAKLKPNIKIFDGSSPKTSLINGEVSAGLIYGGEIAL AMQNNHDIKIVYPKESIYFAYDVFMKLKKAPNGTNVDKFINYMLEPKTSVKFSKAFPYYN PNKKAVKLLPKKLRDNPAVTVPNNILARSQTVLNLGRNTTKIDKVWNDFKGDQ >gi|238617815|gb|GG669606.1| GENE 292 324130 - 324540 337 136 aa, chain + ## HITS:1 COG:CC1968 KEGG:ns NR:ns ## COG: CC1968 COG0347 # Protein_GI_number: 16126211 # Func_class: E Amino acid transport and metabolism # Function: Nitrogen regulatory protein PII # Organism: Caulobacter vibrioides # 23 136 1 112 112 89 46.0 2e-18 MILRVINKPSCQIEALKGKVINVKKLEITIRPENLEEVKQILSDRGVSGMTILSAMGAGN QKGEKTTTILKGGEFHINLLPKIHVITYVKDHLVGNILIDIHERLSTGEVGDGKVIVSPL EEVMRIRTGERGENAL >gi|238617815|gb|GG669606.1| GENE 293 324555 - 325682 869 375 aa, chain + ## HITS:1 COG:mlr6965 KEGG:ns NR:ns ## COG: mlr6965 COG3842 # Protein_GI_number: 13475794 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Mesorhizobium loti # 5 342 18 365 377 320 48.0 3e-87 MKEMIKLSSIKKNYGDVKIIKDLNFTVYEGEFLTMLGPSGCGKTTTLRMIAGFEEPTSGE ILLDEKPVGDLPPYKRKINTVFQNYALFPHLTVAQNIAFGLKMAKVPKPKRSLQVEKMLK LVQLEGYGNRKLDQLSGGQKQRIAIARALINHPQVLLLDEPLSALDLKLRKQMQLELKRL QRKLGITFVYVTHDQEEALMMSDRIAVMNKGHLEQIADPRTLYEKPKTCFVANFIGESNI FYGKVSEITKAGAKVTIENGYLSIQSKKPVSESQIVNIVIRPEKVKLSETEVAGFHIPAT VAEHYYAGNMNKTVLRLPNGMALKMNTPGEQVLLPIGTSVFVYWELSDAILVETASDDVY NVVDNPDFSTVNQQS >gi|238617815|gb|GG669606.1| GENE 294 325694 - 326602 801 302 aa, chain + ## HITS:1 COG:PM0263 KEGG:ns NR:ns ## COG: PM0263 COG1176 # Protein_GI_number: 15602128 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Pasteurella multocida # 36 291 17 272 284 200 39.0 2e-51 MEKSIDRDTLSVTKQKTHHLSKTLTKWSQILPISLWMLLLVVIPLIYVLVMSFMSRDFYG GIVYKLTLNNFAQVFETQNLMIYAQSIWIGGLSTIICLIIAYPFAMFIAQKGPVAKTILM ALVIVPSVSNSLVRLFSWVTLLRKTGIVNTTLEKLGIINHPLAMVYNTNGIVLGMVYLLL MFMIIPIFNSLDRIDHNLIEAAEDLGATKWQILKEIIIPLSKPGIFAGCIMVFIPSLGYF FVSDVMGGGTSTMMGNLIENQFQTSRNWPLGSAISVMLILLTIILLIVFQRRGGDMSDLG GR >gi|238617815|gb|GG669606.1| GENE 295 326604 - 327404 724 266 aa, chain + ## HITS:1 COG:BMEI0414 KEGG:ns NR:ns ## COG: BMEI0414 COG1177 # Protein_GI_number: 17986697 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Brucella melitensis # 15 259 13 258 273 204 42.0 1e-52 MEKSNSGSLWKNSLIGLVFVFLYLPILVIVVFSFNTSKLNILFKGFTTKWYYLVFQNVQI MSALENTLIVGIVSAALATVIGTVGAVAMNKYDFPGKAVLDKVLYIPIVIPEVVLGIALL SIYSLAGIPLSLFSLILAHVTFCIPFVVLTVRSRLIGIDQTLEEAALDLGATPFKAFMQV MLPLLIPGVISGAGFSFALSIDDVIISFFTTGPASTTFPLQVYAMVKTGITPEINAISTL MMLVIVLGIAVNAVFQVRKIKRSKGK >gi|238617815|gb|GG669606.1| GENE 296 327419 - 329062 1274 547 aa, chain + ## HITS:1 COG:mll2891 KEGG:ns NR:ns ## COG: mll2891 COG1574 # Protein_GI_number: 13472557 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase with the TIM-barrel fold # Organism: Mesorhizobium loti # 6 540 13 558 559 141 26.0 3e-33 MAKVQILKSNSIFTAESEKFISGAIVVVDHQIAGVYPDQIPTRFLATRPTVTNFGDQTIV PGFIESHSHMFLSALVYCHQITLISGNSELACAKELDQKVIRDQLKPEQWIVAKGWYVPS WTDKRMPCRATLDRYFPDHPVAVIADDLHTLWLNTEALNKLLPSVNSTRFDKDVVVTARG DPTGVIGEQTAMAFLHQIFNYSTEQKAAVLGPYLKHLTKFGLTSICDLALLPAKTAAELD DQIYPAAYHLLAHQNRLPIRVHLYPYFKRGVGPLKQLSARYATERIRVAGGKLFFDGVTS SYTAWMKAAYEGKEDHGRPMIPASEMKQLIFSAQANQLPLRIHAIGDRAIHEALVDFIAA KNQFGQLKTGQHCLEHLETIDPTDLSLMAQSGVVASVQPSHPLLDYQTADLYVGKRSQTM WPFLFFETHHIPMAFGTDSPVVVNVTPMQNIYFAMTSQTLIGEPAKGWHADQRLNLGQAL LAHTINAAKACSYENKIGSLSAGKFADITVLDRNLEHTTARDMKDVQVVGTMVGGEWQYQ KTSQLIK >gi|238617815|gb|GG669606.1| GENE 297 329075 - 330454 1249 459 aa, chain + ## HITS:1 COG:ygjG KEGG:ns NR:ns ## COG: ygjG COG4992 # Protein_GI_number: 16130968 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Escherichia coli K12 # 23 450 55 486 496 426 48.0 1e-119 MEKEPITKDASKESVIDDLDEILGFIKGNEMTDDQKDKMTKDTLNYFDNYVSPGWLKYRK SVSTDAAVLEWTDQDAVIHGLKGEEFIDCLGGFGIYTSGHRNKYILDAVKAQLEHQALHS QELLDPLRGYLAKAVADITPGDLEKCFFTNGGAEAVEMALKLARIATGGRWYISTIGAFH GKSMGAISMGGKGTYRKPYIPMVQQVEHVEYGNAEDMRKAIRNLVAVGETVAAVIIEPVQ GEAGIIVPPKGYLKEVREICDEYGVALIFDEIQCGMGRTGSMWRCEAEDVVPDILTYGKA FGGGIMPITGLICRPKMWVQQLIDNPWLLGSPTFGGNPVCCAAAIATISYMLKADIPGQA RAKGNYLIPKLQALADEFPEVIQEVRGIGLMIGVEFYSDEIGYSVAKGLFDRGVLTAGTL VNSKTIRFEPPAIIEYDQLDQVIERMHGALEDTKEKFGL >gi|238617815|gb|GG669606.1| GENE 298 330521 - 331342 560 273 aa, chain + ## HITS:1 COG:YPO0938 KEGG:ns NR:ns ## COG: YPO0938 COG0388 # Protein_GI_number: 16121242 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Yersinia pestis # 1 270 11 285 294 357 60.0 1e-98 MACKWDTAQNLTKAEELIKGAAKAGAQIILLQELFETPYFCHQEKYKYFELATPLNENPV IARLSFLAKKLAVVLPVSFFERYGNTFFNSLVVIDADGKVLDVYRKTHIPDGHNYEEKFY FSPGDTGFKVWKTKYGRIGAGICWDQWFPETARILTLMGAEIIFYPTAIGSEPVLKRDSQ PHWQRTIQGHSAANLIPVVVSNRIGTEIDETQMTFYGTSFITDQFGDILKQADRKTEDFI VAELDLDEANKTRRDWGVFRDRRPEMYRKLLSM >gi|238617815|gb|GG669606.1| GENE 299 331431 - 333299 1267 622 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1948 NR:ns ## KEGG: Lbuc_1948 # Name: not_defined # Def: lipoprotein # Organism: L.buchneri # Pathway: not_defined # 128 618 448 947 950 359 45.0 3e-97 MRATKLVRFMLLILGALLLCIGFGSANASVAKAGPIYTDESQVEIPYVTINFTYDDGSTT KIIDTVYEQGSVYANSWHYVNDYLPKGYKFDFNNKADYPVQYQQSGKVLVWTSMGNSKVN IPILPIDANNASVTIRYLNALTHEPIHDPVQVTGTVGNRYDVSDKQITINDYKLDESGDS WPANIIGTFTKEPQTVTFYYLPKAGNITINYMDKALNKEISDPVVLSDHYVRDPYDITNE EKTIPNYKLVEKPAALKGEFKLDPQTFTFYYAQKAQDVTVQYLDENDQSIAKPQTISGYV GDAYDATTDQYQLTISGYTLDTNRLPKNGTGKFSRDAQTVTYFYKKQSTPVKPEEPGTPG TPTTPLIPAKPSIPTTPLVPSTPIIKPNLPNYAATKGTVVYSLKKIGLYRSANFSKQARS AWYVKKPRVHRPMFVVTGYTRSASGTLRYKVRDVNHLTTHRYKTGYVTASWRYVRPVYYA KKHAKITVINPRGVNAYRKENLTKKTRHYRQGTVLTVKRLVKHNLTTRFVLSNGRFVTAN RKLVTMGSQKPVRYVQTKRPINRYKTVNLTKKNKLFSKNTKIKVIGFDFSRPHSTTQKGA LRYRVAGGYITGNTAYVKKIAN >gi|238617815|gb|GG669606.1| GENE 300 333614 - 334177 509 187 aa, chain - ## HITS:1 COG:SA0175 KEGG:ns NR:ns ## COG: SA0175 COG3477 # Protein_GI_number: 15925885 # Func_class: S Function unknown # Function: Predicted periplasmic/secreted protein # Organism: Staphylococcus aureus N315 # 32 175 10 153 164 155 48.0 5e-38 MRYTEVVHYFSVNHLRGSIVLRLKNINVPSAVKAGMVAGFLSGLVKLGWEDVLPPRTPQR DATNPPQAMLEKFGVPTSITHSTYTYSEQKMPWVSFIIHFGFSTTFAVGYSVMQHVIPPV RLGHGALAGIGLWGAFHLGVLPKMGLTPEAKDLPIEEQVSEALGHIAWMSTIDLVSNALY QGKQLDK >gi|238617815|gb|GG669606.1| GENE 301 334305 - 335759 1209 484 aa, chain - ## HITS:1 COG:CAC0852 KEGG:ns NR:ns ## COG: CAC0852 COG0531 # Protein_GI_number: 15894139 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Clostridium acetobutylicum # 30 464 4 442 462 189 31.0 1e-47 MREKLSDTNYVAPSQEISPQQPSSAATNTSGLKANSLSFFEVLGESVANIAPTATPAITI PVVFALAGNGTWISYIIATVACVLLAKQVNVFSRRYATSGSIYTYVTDGLGSRVGFMSGA SILFAYITTAVAVLAGFAIYAHNLLAYFNLSLPYPVLMAIGTVSAWFMAQKGVELSTKTM MTMEFLSVSIISILGIVLLFSHHFSINPNNVAFTNISFSHVASGLGLAFFSFVGFEGAAS MGKEAKEPLKNIPRAVISSPLAVGIFFVIMSLIMMMGFSGTGHSLGESTSPLAFLATSNH VSFLGYCITLGAVISFWSSTVGVITAGSRIMMKMSHEGYLPKIVAFVNEKKKTPTFGIGI SGAIIGLLGVGFALMTTIENTYEWFGTIAVWGFLIAYLLVTISAPVFLHKYDELKARHII SSVITGILLMIPLVGSVYPQPEGPAKFFPYIFGAWLAIAFLFHEFKDQQMASIKQSDEIK TQKS >gi|238617815|gb|GG669606.1| GENE 302 336037 - 337410 1270 457 aa, chain + ## HITS:1 COG:CAC1427 KEGG:ns NR:ns ## COG: CAC1427 COG0160 # Protein_GI_number: 15894706 # Func_class: E Amino acid transport and metabolism # Function: 4-aminobutyrate aminotransferase and related aminotransferases # Organism: Clostridium acetobutylicum # 13 451 7 442 445 385 43.0 1e-107 MLETDELQGALPQVAMPLPGPNAKKILAKRAENVPSAVLCNYPVVIDRGSGAMIEDVDGN RFLDWVAGVGVMNVGYGQQRVIDAVKQQADRFFHGMINITTHANYVDLAARINELAPVNA DTRKTMFVNSGAEAVENAVKIAKSFTGRGDVIVFSGAFHGRTALTSTMTAKKTYSYGIEP AMGGIHRAEFPYLYRAPRGYSREESIQYYLDKLQYVFEQAVPAKQVAAIVIEPIQGEGGF IPAPFEYVAALRKICDENGIMLVADEVQSGFARSGKLFVSNYWKEKGFAPDIIAMAKSIG AGLPLAAVTAGSHIMEGVQPGIVGSTFGGNALACAAGLQVLDIIKDQKLTDRATRIGQMA FDRFTDMKSRYEEIGDVRGIGSMIGVEFVKDKETKEPYPELVSKIIKHAVSHGLIMENAG VHDNVIRFLSPLVATEEQIKAGLGIYEDAIKESLAEF >gi|238617815|gb|GG669606.1| GENE 303 337565 - 338419 824 284 aa, chain - ## HITS:1 COG:SSO1560 KEGG:ns NR:ns ## COG: SSO1560 COG2084 # Protein_GI_number: 15898379 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Sulfolobus solfataricus # 3 244 2 240 289 100 31.0 3e-21 MTKVTFIGIGDMGSQMITHLPSAGYDVTIWDKDPEKITNIGNSDIHAASSLAEAVKASKV IITSVMSDDVLTLHLGHDGKPGIVNFLQPGSTLIITSTLDPEKIFAVNKALPKDTQLLDV PIIGGVRYAREGSLVLIASGAKEAFDNVLPVLKAFGTVKYVGELGNGAKLKLITNVGIMA AEAGIRETLDLADAYDIDYDTVLGLMQMGPLKPVVSRALDTSNPRPLKGSVADEEELLNA TKDLIKLPLAKGSRDRLRDAVDAVEGEARFIDITNKNTALPKFK >gi|238617815|gb|GG669606.1| GENE 304 338699 - 339346 628 215 aa, chain + ## HITS:1 COG:SP1625 KEGG:ns NR:ns ## COG: SP1625 COG4300 # Protein_GI_number: 15901461 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted permease, cadmium resistance protein # Organism: Streptococcus pneumoniae TIGR4 # 1 214 1 198 204 90 32.0 2e-18 MVTTIITSIVSFIGTNIDDTFVLAVWFSQVDAVLRKRDIVWGQFVGFELLVLVSVFAAYG LSFLPTDKVGWLGVIPIVLGIKKWLEYRHHSGKSDEAEEAEIQAEIKQTKKISPRATALS KLINPQMVSVGLVTVSNGAGNLTVYIPLFTEYTIFELVVTVIVFTIMTGVWCYLGYKIAN LPIIKDKLDHYKSVMIPIIFIAIGIYVLVESGVMG >gi|238617815|gb|GG669606.1| GENE 305 339343 - 340221 492 292 aa, chain - ## HITS:1 COG:CAC1961 KEGG:ns NR:ns ## COG: CAC1961 COG1409 # Protein_GI_number: 15895233 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Clostridium acetobutylicum # 2 276 35 310 324 124 32.0 3e-28 MKLQIHDHHPFKICQLTDIHLGDYPFNDADLKTLASLKVLFDTHSFDLIMITGDLLWGLQ SSDPAKRLGKLYDLLNQYPTPVAITYGNHDTEGIFSRTDLREIESHLIHPADKHHSMIID DRESYALEIYDDQQLAHIAYVWDSGAYSHWQKTDQYAAVEPEQIDWFLKLPYARTSKKMD LGFFHIPFPEYQSAANQIIDGFNHEKVCSPTTNSGLFYALLRQKNVKATFVGHDHDNNFT SSFRGIQLNYGNVTGYNCYGELTRGVREIDVSKDAIKTRIILFSETSDNCSD >gi|238617815|gb|GG669606.1| GENE 306 340236 - 340946 660 236 aa, chain - ## HITS:1 COG:lin0579 KEGG:ns NR:ns ## COG: lin0579 COG1387 # Protein_GI_number: 16799654 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Histidinol phosphatase and related hydrolases of the PHP family # Organism: Listeria innocua # 1 231 43 274 275 151 36.0 1e-36 MPPDFYEHAVGSRHAIYTAAMSDRELPEYLRKMNRLKEKYADKIRLLIGFEIDYFSQYQR WTAQMLDVYGSAIDDAILSVHFLPTVNGLRAIDDSDLDFRTGVLAAYGTPVGVANAYLKT VAEAIDWQVTNKPQRYGHIMLYRKWRNLFDSRTVWEDHATRDLLKHILQKIAARHEFLDC NMAGLFRTSQTESSPNFTWLAQAQQFGIPLVYGADAHRVADVAQGYNTYLENGYDK >gi|238617815|gb|GG669606.1| GENE 307 341111 - 342145 854 344 aa, chain - ## HITS:1 COG:SMc01608 KEGG:ns NR:ns ## COG: SMc01608 COG3842 # Protein_GI_number: 15965973 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Sinorhizobium meliloti # 5 245 3 243 353 257 52.0 3e-68 MASDFLKVTDLSITLSGNNVINNMTFSIKPNTLTTFLGPSGSGKTTVLRAIAGLNTQISG KIYLDGQEIQQLPVNQRHIGMIFQSYALFPNLSVFENVAYGLRVQKVSATAIKDKVTRML NLVSLADKKDAFPDNLSGGQKQRVAIARAMVLEPKLLLLDEPLSALDAKIRVDLRTQIRH YQQELGITMLFVTHDQGEAMAISDDIIVMDDGRVQQQGSPLTIYTKPRNQFIAQFIGNHN LLSGKDLMRLGFKRAQKRLIDPNDQYIVRPELFVKDSSGQSKETMPISGKLTSIAVLGDR IRYEMQTPQQIRLKVETLNQGLPLGINTSQTLYLSPDDIEKVGD >gi|238617815|gb|GG669606.1| GENE 308 342150 - 342947 541 265 aa, chain - ## HITS:1 COG:Cj0731 KEGG:ns NR:ns ## COG: Cj0731 COG1177 # Protein_GI_number: 15792080 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Campylobacter jejuni # 24 254 27 257 259 132 33.0 5e-31 MKKHKQTLIPKMIIALISIYLVAPIIATTLYSFSTSWVKTILPEGLTFHWYAQLIANPDF VSAMIRSLGLGILTTIIAMTCFLPIIFYANVYNPGLKARLRFITVLPFTIPGIILVTGLI QVYQNIAVPKIIILLLAITLLSLPLTYQTLDNAFISRDFRAMFEQSLILGDKPVHAFIKV ILPNIKVGIFVASLLTFTTAFGEYVITNMLLGGDFETLKIYMYRLMQSNGQASSVLTTIY FAILAFISLVLVLIVQKGSASKGKE >gi|238617815|gb|GG669606.1| GENE 309 342947 - 343771 646 274 aa, chain - ## HITS:1 COG:PA3252 KEGG:ns NR:ns ## COG: PA3252 COG4132 # Protein_GI_number: 15598448 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Pseudomonas aeruginosa # 16 274 22 279 279 167 36.0 1e-41 MINRLKIYGPFALLIILVLLLPLIVMIISSFQAINGGFTLSNYHQIMTNQYYHQAIFNSL KISFIASICSLVVAVAGAWALTHLKEETKNTLITIFNMSSSFAGVPLAFSLIILFGNAGV VKAIATALHLTNHFNIYSLTGLTFSYTFFEIPLGIMFLFPVLEDLNPDWKEASQVLGANQ AFFLRKVIIPIILPNLVEVFILLFANAMGTYETAYALTGNNIVSIPILIGSLINGELTAN LPLACAFASLFAILMTLMVMLGNRLTKSKSEGAK >gi|238617815|gb|GG669606.1| GENE 310 343773 - 344855 1047 360 aa, chain - ## HITS:1 COG:PA3250 KEGG:ns NR:ns ## COG: PA3250 COG1840 # Protein_GI_number: 15598446 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+ transport system, periplasmic component # Organism: Pseudomonas aeruginosa # 11 357 7 348 352 324 49.0 1e-88 MKKHRLVSGLALLTIAIGLGGCAKTSAENTSNNWGTIVKEAKKEGDVKSVGMPNSWANWG GTWNDLKTQYKIFHSDTDMSSAQELQKFKSEGTSKNAPDIGDIGINVAPSAEQEGLLAKY KTKYWNQIPSWAKDKKGYWSAGYTGSIVFITDKKNVKAADAPTSWKQLASGKYKVAVGDV STEAQAQYSILAAAYANGGSEANLTPGLNYFAKLQKEKRLSTVDTTIQNLQKGEISVAVM WDFNAMNYAHQIDSKRYKITVPTDGTVRSGYAEVVNKHATHPYAAKLARSYILSNKGQIN LAQGYARPIRSNVKLPESAQKKLLPENAFKKVYHVKNNNTWNKTTLKLGQLWQNKVLGAK >gi|238617815|gb|GG669606.1| GENE 311 345193 - 346431 1010 412 aa, chain + ## HITS:1 COG:BS_yurG KEGG:ns NR:ns ## COG: BS_yurG COG0075 # Protein_GI_number: 16080305 # Func_class: E Amino acid transport and metabolism # Function: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase # Organism: Bacillus subtilis # 3 400 6 410 416 459 54.0 1e-129 MSELKINHRLIMTPGPTMVDPRVSQAMSNQILGQFDPDFTDIMNENMVMIRKSFRTKNQW AFPIDGTSRAGNEAVIGSIVSPGDSVLVPVFGRFGDLFVELAQRAGGKVTTMSTEWGTVF DQDQIIDEINRLKPKVVAIVHGETSTGRLQPIDRLGEAVHQYGGFLVVDAVASYMGTPVE ADKWQLDAVVGGAQKCLSIPSGITPITFNDRFAEEINQRKRVEQGVRTALDTNGDTFITS NYLDLTQLQDYWSPRRLNHHTEATVADYALNEGLRLALQEGLDARFARHLTVHRALNAGL DAMGLTIYHEGDHDMPMVTCVQIPTGLDGDTFRSTLLKNFGVEISSSFGSLQGKIWRIGT MGYSAQRLFVTNFVALFGAALLQAGVSIDLKAGLDATEAAFKLKTLQKTLEV >gi|238617815|gb|GG669606.1| GENE 312 346734 - 347051 400 105 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509788|ref|ZP_03939837.1| ## NR: gi|227509788|ref|ZP_03939837.1| hypothetical protein HMPREF0496_1951 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1951 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 105 1 105 105 191 100.0 2e-47 MMKVLEHTQIEDIAKDYLYQFQIVFLQEQLYSDREAGEIFSALRKKAIRQYEEITGTSMT TDEFYRIVWDLPEPLKEGIIELAKDDVDLGRTKIIRKNMDGTWRV >gi|238617815|gb|GG669606.1| GENE 313 347375 - 348562 1053 395 aa, chain - ## HITS:1 COG:BS_ysfB KEGG:ns NR:ns ## COG: BS_ysfB COG3835 # Protein_GI_number: 16079919 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Sugar diacid utilization regulator # Organism: Bacillus subtilis # 293 386 267 360 368 62 34.0 2e-09 MIDLRTVVKKEKKRIFQVNSASLHGRTANAITIMDNDAVHQWARSGEIVITSSRMMPENI DIAKQVIQKLAQKNTCCLMVKPYTDSISSKFPAELRDYADQLDFPLFEIDKDVTYIQIMN DFNTLLFQDRRTNKMADLDLDYLLKSNSASDKDFDFISGLKGVDLYKLYTRVTRISLAET PKSSERMMVQYNLISQLHALFAKLETDKKITTYFVLESADGATIVSFFNDDQAEKPPYDR QVYHRLMSTIKIPHFSLYEGVASLHEAKNLHRSFTEACFGMDVAKTMDWQNHPVFYRDVS LWELVNQISRIQDSRLYPVEMDQILTNKEVFETVQQFFNHNESIKETSEALYTHPNTVRY RLNMIYKQTGLDYRRTNDKFLIYIALIEKLLSEKE >gi|238617815|gb|GG669606.1| GENE 314 348865 - 350052 775 395 aa, chain + ## HITS:1 COG:SPy0890 KEGG:ns NR:ns ## COG: SPy0890 COG1015 # Protein_GI_number: 15674915 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Streptococcus pyogenes M1 GAS # 1 394 1 402 403 327 43.0 2e-89 MRRFKRVVVILLSSVGIGEAADADKFSDQGSDTLGHVCDYWRGSLALPTLTKLGLGNIPR QSPLTGILATKPLISQVGRMQEISAGKDSLNGHWEMMGAPLKEQLDTFPSGFSSRLIHKI ETFSNRKVILNRPAATLTAIKDFGQQQSEEGDLIVYTSSDSVLQVSSNEAVVPLEELYRI CRYIRFVVDESHLEIGRVVARPFVGKTLSDFKLTDNRRDFAIVPKANTVLDFLAENHTPV SGIGMVNDLFSGRGIENRIQIYNKQSSFYKLLETMETQSIGLIFADLGNLDKYGHARDPQ GYGIELMRIDSQLKEIIEKMTPTDLILITADHGNDPTFKGFDHTREFVPLIAASPNANGN QLGIRSTFSDLGKTILSNFEIGNQLPGKSFLNQIS >gi|238617815|gb|GG669606.1| GENE 315 350361 - 350915 190 184 aa, chain + ## HITS:1 COG:no KEGG:LAF_1698 NR:ns ## KEGG: LAF_1698 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 4 171 63 217 220 69 31.0 6e-11 MARLKQIWCADVIRPNGRVVKYRLTRDLQHALNSDSRGRNEMQNALIVIPLAPYLRTEKS KSVDDRKRLLQTSQPPFGIGLVRRIYRLSSGQARYFQVTRSQFIGHQYWTVRPFKSCNSY LRHDYPWLSQKQIAADITYWQNQLFKRNTRQNWFWKWVSSYRVKHQLKKIRYSQYLSDLK NWKV >gi|238617815|gb|GG669606.1| GENE 316 351293 - 352210 665 305 aa, chain - ## HITS:1 COG:no KEGG:lp_3091 NR:ns ## KEGG: lp_3091 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum # Pathway: not_defined # 1 304 1 304 304 290 50.0 5e-77 MKITLLGSLGHIGSIVAPALLKDGHDVTIITTSQKRAAQIKELGANAAIGTMTDEDFLSR QFQNADVVYLMISGNSDGSIFENAKKQGQIFSNAVRKANVKNVVDLSSIGAYEPEAGSLY AYHFIEDKLRELNDVNVAFVRPVGFYSNLYTNVQSIRQNHVIYSNIPEQTEGKRVSPIDI AKVVLKLLEQTPEGKTIHYVYSDTFSMHQLIEMLKVSLPMPDLHFVQITDQEAENQLLSN GIPMSIAKSFVQMNAFQRNPEKLYEDLNRQSPVAGHYKLTDFVQEFTASFNDQKPSGGSN TLVDK >gi|238617815|gb|GG669606.1| GENE 317 352321 - 352923 341 200 aa, chain + ## HITS:1 COG:no KEGG:LVIS_0229 NR:ns ## KEGG: LVIS_0229 # Name: not_defined # Def: transcriptional regulator # Organism: L.brevis # Pathway: not_defined # 3 190 12 199 201 165 44.0 1e-39 MKKKDLTKEKKILDATAQLIVSEGAPSVSTIQVAKKVGISQSNIYLYFKDKRALLEGVYL REINQLEQTPGMQIVLDKRVAIEKRCFAYIRAMYDFSLDNPNSLSIIEQIKSLSKDFPDY ISKLIGPNNPIASLFEMGIKAGVLRPIDRSLTMAAIFSVIRRHAQNIQENIYTESDVTFS DISRMIWGAVAIKPYPENLL >gi|238617815|gb|GG669606.1| GENE 318 353164 - 353991 477 275 aa, chain + ## HITS:1 COG:lin0018_2 KEGG:ns NR:ns ## COG: lin0018_2 COG4990 # Protein_GI_number: 16799097 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 117 275 4 164 164 159 50.0 7e-39 MRSIYYFVGLLTCFLVFGFSGKAFADSTYQEVYSNTPANYYLKVGNGTSRNNGIYQTGGR LTSAQNVDPIAYASQYAGKEVHVNREEVTIDGTWLKIAYQHKTVGWIHKSAMNQSYLRLN VPMVAQRPQLPTGCEIAATTMMLQYAGADVTKMQLAREMPRSKNPNKGFVGNPYSTSGWW IYPKGLMKLVKNHAGSAINMTGAGFGRIKQSIRQDHPVVVWVHGVDGFVNHALAITGYSA TRAYYNDPWTAKRASMTVQTLQRHRSRDAYRALSY >gi|238617815|gb|GG669606.1| GENE 319 354013 - 355047 693 344 aa, chain + ## HITS:1 COG:no KEGG:LVIS_0239 NR:ns ## KEGG: LVIS_0239 # Name: not_defined # Def: periplasmic protease # Organism: L.brevis # Pathway: not_defined # 24 344 24 344 344 469 71.0 1e-131 MKRRVRLAIILGVGALFGLAGEFQASASSFTSNPGIVKTKKAVRLYKDSARTVKSNLVKK GHFLKIDEVVQKDGRVTALETNHQQYVTANKAVVAKTSGYQNPKQYYQVHYQQIKPYGQI GYTVKRGFEGIKTWYIMRKMGTFAGYNKYNQATYHAVRQFQSRHHLKVTGNVNEATWLKM GFTKTSWTGIDSYVAPLKANAWQGRKAHIDAMIHQAYRYMGNPYLVGASSSPKYGTDCSG LVMQALYAGGIDPAPISSIHHAFPGNEWNSRNLWASKKLMHVSYNHRQRGDLVFYYQPGT HTIWHVAIYLGGNRVIESWPPRIMVQPIRNGQRSDIAGIARVFH >gi|238617815|gb|GG669606.1| GENE 320 355189 - 355830 279 213 aa, chain - ## HITS:1 COG:CAC3518 KEGG:ns NR:ns ## COG: CAC3518 COG1309 # Protein_GI_number: 15896755 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 31 207 17 195 195 100 33.0 2e-21 MILESLIIIGSDFLENPEIQPHQEKNTNRLVLSTAWKIVQDADYQAVTMDAVAINAHLSK TELYQKWPDRATLVTAAFSHYDSMAVNLHVPNGGHLERDLSKLFKELLPEINELSRPKFA GLVPERLQDVSLDQIFSIGPGKDFHKVLMTMLKRANKRHEIQLDQLSENVLNLPALLLVN QIIQGKQVVKKNLDQLITEILLPVFTASKVKWI >gi|238617815|gb|GG669606.1| GENE 321 355948 - 356955 557 335 aa, chain - ## HITS:1 COG:mlr0961 KEGG:ns NR:ns ## COG: mlr0961 COG3594 # Protein_GI_number: 13471080 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose 4-O-acetylase and related acetyltransferases # Organism: Mesorhizobium loti # 8 318 7 312 672 61 24.0 2e-09 MRKKRIEWIDIAKAYGIIAVVIGHALASGTTTHIIYWWHMPLFFVIGGFFLKPINAKKLI EWKRFFNKRLYRDLLIYFMAGIGLILLYSILYNKDWQYLVNHLSRLIVGGRTLNLYTSTF WFINVYLLSICAVTLLISTVKSRWIQLGIVSAALFAGTCYDKIDWMHLYSFETMPWNVDI VLIAAFFTYIGYLFFHTHYQWIEKPVPIASLLVLSGTLVVLYLNNSFDFQFSLKSHEIQS SLPKVVMLATIPLIFSFGVMGLSYLTSHLESSFILATIGQHTMIIMYLHNALLDITSMAG IENVATKVIIAIIVPMLITLVKRPVTRNRSLYLDS >gi|238617815|gb|GG669606.1| GENE 322 357231 - 360332 1883 1033 aa, chain - ## HITS:1 COG:BS_yfhO KEGG:ns NR:ns ## COG: BS_yfhO COG4485 # Protein_GI_number: 16077927 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 140 677 97 592 819 84 22.0 1e-15 MQETASRSIGKSRKVPLFILYTATFIFICLLTYSLPWLAGRTLIWNVDGIAQHFPILAQF QRILQGTAHQSLFGWSWNLGAGADQLTTFAFYIVGDPFSYLIALFPADKLELGYQVLILL RLYCAGLAFLAWANQRSFSRHSKLIGTLIYTFSGYNFYVSMHHPFFLLPMIIFPLLAMGV EKVLHKQNWLPLALATALALISNFYFAYMLALGTFVYLLTRYLHYRHVSPEKLPNTKIIY CVIQAVITGLLMAGITLFPTLLAVLNSTRIAYHAKFANGLLLYPAKYYFSLPNQLITSTT IKDYWLVLNFCGLAFLAAIYVLKHFKANRALAIILLVILVSILLPQVSATANALSTPSNR WLFLAVLPMSLAVMIFVDQLPHLTRSDLKWLIGSTVALIALVWITKGLTLNVQQNDLIAY GFLIGFLLLIACQTSLKLSLKTVAVTLTGLVLINLVSNGQGWLSPNNSRNLNSELMSGSA AKWLKDYYDGAQTALPNTGGFYRTTTMNQYYRHRTAGNNIPMVLGTHDLGAYYSIQNGYL LKFNRSLGNSDSVVNSVIGEGDGRTTLLNLMGVQYMFAKTDIIKRPQAVPYGFHFVKNNQ GGILDFPELPVPGLSNHSGTVLLKSDLALPLVYMQNHAITAADYNSLSPLQREQALLSGA EVQKPVDGVSSTSPKPTVKTVGYTTQMYDQHLVNNPIKATLYRMRHSPNIRYRQAAAKFK TTLPANKIAIWEKATGLNPKGTPLKNVIAKNREVVERHEAENQSGLKIMDNDAQGHHLAY RLNLRDPNKYRNSELYLVIDGISETRHTMMDRLDNLRADSIVSGTPVSKLQKIDRLRTAA AFPDLGGYSISVQTGTTTAHVRQLPMNNLSDYEDRQHIVLNLGYTSKANRALILRFRGVK QLHFKSLKIMAVPFNRTYNRRINQLQQTGLQYQKVTNDTVSGYTDLTNRPRIMTTSIPYS TGWHLQIDGRNAETFRVNTGFVGAQVPEGHHFIKLKYETPGFKPGILLSIAGIIWWVIFS LIYGMTLLMKHRK >gi|238617815|gb|GG669606.1| GENE 323 360635 - 361621 840 328 aa, chain + ## HITS:1 COG:BH3531 KEGG:ns NR:ns ## COG: BH3531 COG5585 # Protein_GI_number: 15616093 # Func_class: T Signal transduction mechanisms # Function: NAD+--asparagine ADP-ribosyltransferase # Organism: Bacillus halodurans # 127 295 311 480 490 73 33.0 6e-13 MTKFKRLLLGTIFLVGIFVQLPVQAQSVRKEVQGNQTTYVTTNYYAHAVNVGKRQLVTNK LARLYSIANGRVDDDHWVSVTKNSVLTVKDKLTSRNGYVVTIPGNKNQFAFINPIKYVYS IAGIKNNPEKIKQLTVSSKKWAKKLSKGQVKAIRYYTNNGYGKINTALRQPDDAASAKVK TSIKSISTGIQAFHLDQPTTVYRGISKEGLAKSLGSQSLKVGRQYHDPAYSSCTLSQMIA LGFSKQHVVLKINLPTGYHGAYIDPVSTNVGEKEYLLDSGTKLIVTKVQQAKSTVHTVTT IKKKGKQTKKQVSNVKTNYQLVTLNLKQ >gi|238617815|gb|GG669606.1| GENE 324 361727 - 362782 839 351 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1873 NR:ns ## KEGG: Lbuc_1873 # Name: not_defined # Def: G-D-S-L family lipolytic protein # Organism: L.buchneri # Pathway: not_defined # 8 349 7 347 348 402 58.0 1e-111 MSWFIKRKKIVIFLASFLIAGGVFIATGRVADTSSEEVQVEYSSPVITHAYALKKKAILY NNVKLTQAINGSSFLKTAWYRTHAAKLSINGKTQTAYQVKDNSGKYTFWVLRSQLKSINS NSYKLKLAGANNRFYHKKIGFFGDSIPSGWDGYHFYMNNSYPDWMNKYLGTDNRVENFSV PHAKIVGKRFAYIGTTRVAQDLPVAIKYHENDIRNMNMIFIHIGTNDYTNYSGSGSLRNV IAHLKRNVMAIKLLNPTAKLYGVLPLTRYDANGQNRQNMSDMYGYTFGQLRSAEAKLYRQ LGVNVINFDTIAPNLITDQNKDIVYEDHEIHPTPQVAQKLGYYLAKYLISK >gi|238617815|gb|GG669606.1| GENE 325 363046 - 363768 829 240 aa, chain + ## HITS:1 COG:L42784 KEGG:ns NR:ns ## COG: L42784 COG0657 # Protein_GI_number: 15672412 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Lactococcus lactis # 16 237 27 266 268 122 31.0 6e-28 MDIRNIGLDQSEESSLDIYQSKTDEKLPGIVIIGGGSYKQLKERDTERVALTFATQAFQA FVVKYPVLEKKNYQDAKASIEQSFDYIIKHADELNVDTDKLGIIGFSAGGQLAADYSNEK HSHAKFAMLGYPVIKPTLDKKMGIRSLDVSKTVSSITPPTFIWGSINDELTPFLDHVHVY AEALAKNNVPFEVHEFGTGNHGIALANKWTAIVNRDRADKHMARWFELGMEWLQEVVGIK >gi|238617815|gb|GG669606.1| GENE 326 363975 - 364754 595 259 aa, chain + ## HITS:1 COG:mlr4456 KEGG:ns NR:ns ## COG: mlr4456 COG4705 # Protein_GI_number: 13473756 # Func_class: S Function unknown # Function: Uncharacterized membrane-anchored protein conserved in bacteria # Organism: Mesorhizobium loti # 3 252 68 296 309 122 36.0 6e-28 MLFWISKLISTMLGESASDFSSQIFGQQHQTLGELFTVGWSLSLFIVFLYLQIKSDKYHP IFYWNSVGLLAVFGTFSADTLKAVTGLHYAETTLIFFVLMIGFFVAWYATTKDLSIHHIM SRYKEAFYWLTVAATFMLGTAAGDWFATARSGGYNTDPTGLGLGFLNTGVVLGLIFLMVL VYRAMFKPKENGVAEIASFWFAYILTRPIGASFADYFGYNFDKGILGNQWMTVIGIALFM AAVMMLYKNDQRGTQVSHG >gi|238617815|gb|GG669606.1| GENE 327 364747 - 365796 538 349 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1891 NR:ns ## KEGG: Lbuc_1891 # Name: not_defined # Def: acyltransferase 3 # Organism: L.buchneri # Pathway: not_defined # 15 333 5 325 335 262 46.0 2e-68 MAKHFKTNSGEPNNRVEWLDIAKAYGIIAIVLGHILTGSSTAHFLYWWHIPLFFLIAGIF LKPLKSTDAWLTFFKKRVISELLMYAGIGLLLICLYTVIHHQSNQFLMKHLFDLVLGGRT LNFYTSTFWFINVYLLTIMAVTVLISVTKNWLIILLITIAGLFLGTGYQQVTWMHINGFA MMPWGMDTVLITAFYTYLGYLLFHGHLKWLEKIEVNMPIMALAGLIIYIHSKGDFSFRLS LKSHLMQSSLPIGLAVAVIPVIFSLAIMVCAYFTSKIPIKFGLPIIGRHTLAIMYGHKLF LDLCLLIGMRSLPVRLAIGIIAPVMIALIVQKVGKSIFERSGGQLIDKV >gi|238617815|gb|GG669606.1| GENE 328 365913 - 366512 491 199 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1871 NR:ns ## KEGG: Lbuc_1871 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 8 198 2 192 193 217 56.0 3e-55 METDDKKREFILSYLETQPNQVNLKVVRQLIEFSKNNNYAAPDILYELMLMDQTHEKILT ATFDLDFVDGVKLFNNKADRWLTDRGQKYLQSLKLQESQSIHSNLDPGNAGDTDTAYDGY LTQLIACKDKMQTEADKVTLQEFTIDLRHLLTDSKKLEEGALNKFQPFIERNWRDLSTPM TPILVELSRRFLFAMAYDA >gi|238617815|gb|GG669606.1| GENE 329 366541 - 367431 745 296 aa, chain - ## HITS:1 COG:BH1869 KEGG:ns NR:ns ## COG: BH1869 COG4189 # Protein_GI_number: 15614432 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus halodurans # 1 296 1 300 313 301 47.0 1e-81 MDLDISKDSLEVYKALASSVRIDIIQELSSKRMSVQDLSKTLKLSSAIVLMHLNKLAEAG IIGFERHGHKKISYLKVDNINVHFPKTIYPAFAVYDTQVPVGQFTDYSVTPSCGLAGKND YIGKVDNPTYFMSPDRIKAGMIWWTEGFVEYQFPNYLEEKDNLEMLDLSMELGSEFPFSN NVWPSDISFYINGDEVGTWTSPGDFSDIRGKYTPAWVPDNVNQYGQLKIVRITDHGSYLD GQPFTDVSIDDIDWHQPTFTVRFAIKDDAKHKGGCTIFGQGFGNYDQDISMKLFHS >gi|238617815|gb|GG669606.1| GENE 330 367702 - 368673 1023 323 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020424|ref|YP_526251.1| ribosomal protein L11 methyltransferase [Saccharophagus degradans 2-40] # 8 317 5 310 314 398 58 1e-109 MTLTDYTSPLIVQRADPYIYKHTDGYYYFTASVPAYNLIEIRRAHTLEGLAHAAPRTIWR KHESGPMSQLIWAPEIHYTDGKWFIYFAAAETTALDKLGMFQHRMFCIECDAVDPMRGED DWFEHGQVETGMDTFCLDATTFEHDGKLYYVWAQKDTNIKGNSNLYIAEMSNPWTLKTKP VMISKPEYDWEIRGFWVNEGPAVIHRNGRFFLTYSASATDENYAMGMLTVADDVDLLDAS NWSKAKEPVFKSDLATHQYGPGHNSFTVAEDGKTDLMVYHCRNYTDIKGDPLYDPNRHTK VQAFTWNEDGTPNFGKPTPYNYD >gi|238617815|gb|GG669606.1| GENE 331 368822 - 370093 1183 423 aa, chain + ## HITS:1 COG:CAC1530 KEGG:ns NR:ns ## COG: CAC1530 COG0477 # Protein_GI_number: 15894808 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 29 386 21 378 411 298 44.0 2e-80 MQNDANVPRKKESKHFWGFPFTHFTYFFMWQIIFGYLTLWMEQVGHMNGAEAGVVFSAMA GLSLLFQPAFGVISDKLLFKKNLLFTIAIAAMLIGPYFQWVFLPLMQINSMLVAIVTGIY LCFIFNGGVSVIEQYVQRASLANGFEYGHSRMGGSLAGMTASFVGGQIFLWQPNSIFWAC TISATILTGLLLFSDKIDMDNASAAGDTSNSLDLKQIGQIFKLKNFWYLSIFYIGTSAIY DVFDQQFIIFFKTFFHTAAAGTQAYSYMTTAQIGLEFLLMFPMPWIINRIGSRNGLIAYG VILAIRIIGSALSPSLIWVIVLRLLAGFEMPLVLVSIMKYIAGAFDVRVYATVYALASNF AKQISVFIFSAAAGSMYDSMGFHHTYLILGAIVAVVTIFAAFVLKKEDPVQAGEKDKQGN AKA >gi|238617815|gb|GG669606.1| GENE 332 370259 - 371833 1492 524 aa, chain - ## HITS:1 COG:FN0649 KEGG:ns NR:ns ## COG: FN0649 COG1574 # Protein_GI_number: 19703984 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase with the TIM-barrel fold # Organism: Fusobacterium nucleatum # 4 522 6 539 542 202 28.0 9e-52 MPTFKNAKIFLGTNATTFASAMNITDGVVTHIGETSEVTDPDAVDLHGKTVLPGIIDVHT HPKYIADALHGVACTPPKVNSIADMKAALKHSSAYGQSASTWIEGWGFDESKLAEHRSPT ADDLDEVSKTQPIFIYRSDCHSSVGNSKALELAGIDANTPNPAGGFIGHFPDGRPNGYMK EVAATQLLIQAKSAQSYLDDVDNMANSSDHYLKNGIIAIGELMGRFRPYNSLQLYQDALV DGFKPKTAIYYVFDEIMPGQVVEPTSQDQLRIAGIKVFMDGSISGETAYNKAPYPDGKQG VLLTDADRLKQAVWYATEHHLQVAVHAMGDAAIQLVVDVTADLTPWLDDRPSIRIEHASL LSDQMLKEINRARMNYALVTQPIFFFAEDESYRAYLNDAQFKNAYRIKSMLNSNAMMALS SDAPCTPWEEPDSPFVGIYAAVTRTAANNDIVNANEAITVPEAVLAYTNTGARVGGFTHN GQLRPGYAGDFVVLDQDIFSIPAEEIKDIRVEQTWMAGEKVYQK >gi|238617815|gb|GG669606.1| GENE 333 371909 - 372085 59 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRLFFQALAFDVSLIEYSWKMHLMYVIPMIAYCSIHLITRLIYSLHSFYHLNLSYHQM >gi|238617815|gb|GG669606.1| GENE 334 371992 - 373176 820 394 aa, chain + ## HITS:1 COG:BH3996 KEGG:ns NR:ns ## COG: BH3996 COG3410 # Protein_GI_number: 15616558 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 227 391 18 182 188 139 43.0 8e-33 MQSLESHTLNAFSKNIQLTTHQKQVLERITAFTKHHLNQDGHAVFVLMGDAGTGKSLILN QLFTELAQEVDEAYFLVNHPELLKVYRELAGETPHMLKKYYQRPTSFINKLHKQQKHVNL TVIDEAHLLLSKADHYNNYYGDNQLEDIIQLSKVTIVVFDPHQVLRTKSFWTKDRLLKLI DKYPHDFVHLKEQFRMQAGPKLMDWLDHFIDGDIIGPVPTDVGDYDFRIYSDAQKMFRQI MQKNDHYGLSRMTSTSGYPSTLDGGKHLVNEGNFHLPWDQYNFTSTPWAEQPQTINEVGS IYTVQGFDLNYIGIIIGPPFYLTADNRLGVDPSKVTDVEIFKHRQDLSGQDYEQSKEILL RNSLNVLLRRGIKGMYLHAHDPKLESYLEKMIQK >gi|238617815|gb|GG669606.1| GENE 335 373255 - 373617 544 120 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1865 NR:ns ## KEGG: Lbuc_1865 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 115 1 115 118 112 51.0 4e-24 MKKGTLYTLVIVVVLAIVGGVWYHINYGKTYYYGQVGDVARTEKEPKGYPTGYYYEITGY DKDGKAKKMEVGSFAGHKFVKGRYIKIGWSKAKKVVDYDQAKWKQIPKKAQEKLSAPKNP >gi|238617815|gb|GG669606.1| GENE 336 373685 - 374365 645 226 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1864 NR:ns ## KEGG: Lbuc_1864 # Name: not_defined # Def: abortive infection protein # Organism: L.buchneri # Pathway: not_defined # 1 223 1 223 224 285 60.0 1e-75 MSPSRYLGTKALQIAKWIGFLIIYLFASATLEVAGDYVHNEFLSRHILGVALVVTAAALA LIAWRYGKQLDADNPRRFGKSKLTRQKIAQFVLIFVLMVAFQMFWSYLISKHILVTPDNQ KAVEADQLRLPVWNAIFSVILAPIFEELIFRGIFMNYFFNKDNRLNNILAIVISGLLFGY AHELQFNVNWLMYSGLGCFLSYTYMHFRDIRYSIGLHFLNNFVSMI >gi|238617815|gb|GG669606.1| GENE 337 374367 - 374717 369 116 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1863 NR:ns ## KEGG: Lbuc_1863 # Name: not_defined # Def: Glyoxalase/bleomycin resistance protein/dioxygenase # Organism: L.buchneri # Pathway: not_defined # 1 116 1 117 117 170 83.0 2e-41 MNIREIEYITIPVSDLEVSRRFYHEVFDLPIVKLPNGDMGADLRKMFLDFRVVDKVTPIS FGLIAKDSIADIQAHLINYFVDIVSDPTEKTENRRNVNSITILDPDKNQIEVNEFK >gi|238617815|gb|GG669606.1| GENE 338 375265 - 376800 1361 511 aa, chain + ## HITS:1 COG:CAC3339 KEGG:ns NR:ns ## COG: CAC3339 COG0488 # Protein_GI_number: 15896582 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 3 503 13 516 518 380 39.0 1e-105 MSFAEKDLYKDAEFTLGKGEHMGVVGQNGVGKSTLIKIITDTQLPLTGDIKWQKNIKIGY LDQYADIEDDLTLIQFLRTAFADLYKKNETLTKLYETYAETADDKLLERAGTIQDELDSS DFYDVDTRIEQTVVGLGLDSIGRDHLVGKMSGGQRSKIILAKMLLADPDIILLDEPTNYL DVNQIEWLVDYLNNFSGAAMVVSHDYDFLDRITNCIINVAFGKITKYRGNFKKAMRQRKE REEFQQKQYDKQQVEIEKAERFIRKNKAGSKSTMAKSREKKLSHMDKIDPPSTNISASFN FPYEDTGSHEALTVEKLSVGYNKPLLAPVTFTISMGEKVGFSGFNGVGKSTLIKTILKKL PAKGGTAKFSPSAIINYFSQDLAWDNNRMTPMQIISDKYPKLSQRTIRTKLAKCGLDAQN AIKPIHELSGGEQTKVKLAMMEFVPSNFLIMDEPTNHLDEETKEALKRAIDRFSGNVIIV SHENSFYEGLVDKVLNVEKLSLRERAKNETL >gi|238617815|gb|GG669606.1| GENE 339 376903 - 378291 1270 462 aa, chain - ## HITS:1 COG:CAC3422 KEGG:ns NR:ns ## COG: CAC3422 COG2211 # Protein_GI_number: 15896663 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Clostridium acetobutylicum # 24 459 10 442 445 289 40.0 7e-78 MKMTQTLPKGSDVVADSEHITNKERLSYGASDFACNVANGMVGTYLMYYYTDVFGLAAGA IGTLFFVARIVDAISGPTWGIMIDRTHTRWGKSRPYFLWFSIPYAIFFILAFSSVPLGPL GKLIWAYVTYIAIDILYLGINIPITSMLPSLTASPQERVKFSTVRQVLATTGATLISIAV LPAVQLLGHGNDKQGFLVTAIIVAVLTAFLLLVTFKNTHERVHPKHQTKLSLKQSASALK GNWPWMIISSMYFFFWIGMQTKLQVTVYFFKYNMHNADLASFMLGLQALSLVVIVFTPFL TRHFGKKGTMVIGLGLCVISQLVLGVGAKMMNVPILAGATILGYFGNGFFAGLLPVMLAD TVDYGEWKNGVRAEGLVTSFSGIASNLGMGMGGVVTGFLLSMNGYVANHAQTPQALNAIE MNFVWVPLIGFGIGLILMHFYKFDKMQPKIEADLKARHEAAD >gi|238617815|gb|GG669606.1| GENE 340 378320 - 379798 1179 492 aa, chain - ## HITS:1 COG:SP1894 KEGG:ns NR:ns ## COG: SP1894 COG0366 # Protein_GI_number: 15901721 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 1 471 1 471 480 630 63.0 1e-180 MKLTNKAMLITYPDSLGNNIKELQSVLANHLKGVIGGVHLLPFFPSSGDRGFAPMDYTKV DEKFGNWDDVQELAKSYYLMFDFMVNHISKKSKYFKDFQQNHNASAYRDLFIHWDEFWPK GRPTQEDIDLIYKRKPKAPVQEVRFADGQSEKVWNTFGEDQIDLDVTKQVTKDFIKQTLN FLMDHGASIIRLDAFAYAVKKLGTNDFFVEPEIWDLLNEINQITAPKATTLLPEIHENYH IVRKLTDHNYFSYDFALPIVTLYSLYSGKSDRLADWLRQSPMKQFTTLDTHDGIGVVDAK DILTDDELDYTKAEMYKVGANVKKVYSSTAYHNLDVYQINTTYYSALGDNDQAYLLARAI QIFAPGIPQIYYVGLLAGKNDLALLEKTKEGRNINRHYYSLDEVDQEVQRPVVQALFKLL KFRNASPAFDLDGQIKVSQPSETEIKVTRQSANGKAKAALTANLKSQEFTIDQITADGKT TRVLTSNLSLVD >gi|238617815|gb|GG669606.1| GENE 341 379803 - 381452 1040 549 aa, chain - ## HITS:1 COG:BH3868 KEGG:ns NR:ns ## COG: BH3868 COG0366 # Protein_GI_number: 15616430 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 7 547 2 552 553 506 46.0 1e-143 MISNQQNPTWWQNAVGYQIYPKSFFDSNHDGIGDIQGIISKMPYIKSLGVNFVWLSPFFA SPNIDNGYDVSDYQAIDPQYGTLDDIFEMIDQFHQNNIRVVFDLVINHTSDQHHWFKEAK KSVDNPYHDFYIWRKPVNGSVPNNWVSLFGGSAWEYNPATKDYYYHLFAKQQPDLNWENP KVHQAVAKIIDWWAERGVDGFRLDAISHLKKDQRFKDVTNQEDAMNNVSGIDQLLANLST DFKRNHLMTVGEAGGVPVEQAKRWVDSKKGYFDMIFQFDHVSFWEKFTVGKVDVAKLRVA LTRWQNGLDNNGWNALFLENHDLPRAVSYFGNDQKFRSQSATALAMMYFLMKGTPFIYQG QELGMTNVDFNDINQFRDLDSQRFYREELAKGASPEETLVKLRAKSRDNARTPMQWNDQP NGGFSDHQPWISSNPNARYINIANEVEQPESVLNFYRQLIHLRLKDPILLNGQYQLIETH DHQSFVYQREENHVGYLVITNLSDQPATVTISDRYQNRQLVLTNTTEKQQSSTMALKPWA AYLYKYERN >gi|238617815|gb|GG669606.1| GENE 342 381642 - 382628 711 328 aa, chain + ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 325 1 320 321 288 47.0 1e-77 MQPKLADVAKLAGVSITTVSRVINDRGYLSSDTKEKVFSAMQQLSYQPSLAARALHGKQF KLVGLIFASLENPLIAEVVEEIENRLFNRGYKAIICNSMDNPEKEQQYLKMLMANQVDGI ITGSHNEGIKEYRLSGLPIVSYDRYFQNKIPTVSSDNLAGGELAATTMIEKGSTNLMLVS GSLEKKAPNNARLTGFKTAAKNRKVPVNTVEFPFNSTPTIKRATIREKLVSHQPDGVFCT DDLTALLCIQEAQKLGLKVPEDIQVIGYDGSKYVQEYNPELSTIVQPVSDIADLLVRLLF NRLEKNDEKLLDTYVLPIKLLQRRSTRK >gi|238617815|gb|GG669606.1| GENE 343 382696 - 383904 737 402 aa, chain + ## HITS:1 COG:SPy0543 KEGG:ns NR:ns ## COG: SPy0543 COG0477 # Protein_GI_number: 15674642 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pyogenes M1 GAS # 6 379 5 382 402 88 23.0 3e-17 METKVKRSYFSLIFSPFASQLGSAIYLLGLNWLIVRMTGNTKLLGIIEGIGGIGFLLGDL LVGRLVDQYNRKVVLVGTDLMSASMCLAGGIIVDNQKPQIWLLLTITFVLNLMLAINFPA AKAIAPEIIDNAGLQRFNAVANMFFNFASVLAPLIGGVLLAIKSIEFNEFLMINAMSFVI AILLNLLISYQPTKRLADQEPQSILKSNLIGFAYVKKHPKLIMNLFSMAIFNFCFAGYLL AAPYISSHFFGGRSENYSLFLTVYAIGGLIGGIWLTLEKRTVSIKVIYYEELFYGTVLII CGTFLSFYTWILIALICGIVQARFFGSITTLIQNETDLEFLGRVFGLTYLCFDGIQPLGN FLFGFFISSWQHWTYVVIGIFLIVPFGIMLYFERQTDLKKVD >gi|238617815|gb|GG669606.1| GENE 344 383980 - 384318 303 112 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509819|ref|ZP_03939868.1| ## NR: gi|227509819|ref|ZP_03939868.1| hypothetical protein HMPREF0496_1982 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1982 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 112 1 112 112 229 100.0 7e-59 MTKTKIYQVDNVKGVYIPYTTAMEGKNRPEFVASSDSQCYFFKLIDSGANELNRFYPLKD WQLSGLQGPTFVDIGHALPVEKTALQRADYIGSVSDRDDWILNNFIKQYYEQ >gi|238617815|gb|GG669606.1| GENE 345 384474 - 384890 400 138 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509820|ref|ZP_03939869.1| ## NR: gi|227509820|ref|ZP_03939869.1| hypothetical protein HMPREF0496_1983 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1983 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 138 1 138 138 261 100.0 1e-68 MTQNKQIQYDLQLIKNWQRQLHYTDDQVQAVIQVDDYSTFITGHAAVGEYDPAADRFRKV AFQKLMPNLDMRSAYLLNGIKFEIHDLALTPTKVQSITGVSTEEYDHFLAGKSDRLVYED AFDRMGVYYYQQVGNRLG >gi|238617815|gb|GG669606.1| GENE 346 384911 - 385234 291 107 aa, chain + ## HITS:1 COG:BS_ebrB KEGG:ns NR:ns ## COG: BS_ebrB COG2076 # Protein_GI_number: 16078792 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus subtilis # 2 101 3 102 117 73 39.0 8e-14 MGYLFLLLAILGELLGTSLLKASEGFSVLLPTVGAIISYMTCLYFLALSMKTVNLNIAYA IWCGIGMVLTTIIAVYIWKEPVNLASFLGIGLILMGTVILSLYGAGH >gi|238617815|gb|GG669606.1| GENE 347 385420 - 385656 88 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509822|ref|ZP_03939871.1| ## NR: gi|227509822|ref|ZP_03939871.1| hypothetical protein HMPREF0496_1985 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1985 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 78 59 136 136 149 100.0 5e-35 MMKSYYKRKPRNNPKNRTASISYTTLIVTILILALIVVWFAPAQEIGIISVWFLVILLFT EDGFTYVDGDIEKHRFKR >gi|238617815|gb|GG669606.1| GENE 348 385753 - 386664 1155 303 aa, chain - ## HITS:1 COG:SMc04033 KEGG:ns NR:ns ## COG: SMc04033 COG0596 # Protein_GI_number: 15966569 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sinorhizobium meliloti # 12 299 16 296 296 155 34.0 9e-38 MKQGTKIITLDNGYHLWTNTQGEGDIHLLALHGGPGGEHEYWEDAAQQLKKQGLNVQVTM YDQLGSWYSDSPDFSDPKVRKDILTYEYFLDEVDEVRDKLGLDNFYLIGQSWGGLLVQEY AEKYGMHLKGAIVSSMVDRIDDYTKHLEQVREEALTPDQVAYMKKCEANNDYDNDKYQSY VDILNKGYIDRKQPSKLSHLIDVTNNDIYGAFQGDNEFVITGKLAEWNFTDHLKNIKVPT LVTFGEHETMPIETGKRMADMIPNAKFVSTPEGGHHHMVDNPDVYYKHLADFIRQVENNT FNQ >gi|238617815|gb|GG669606.1| GENE 349 386718 - 389150 1696 810 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1851 NR:ns ## KEGG: Lbuc_1851 # Name: not_defined # Def: Xaa-Pro dipeptidyl-peptidase (EC:3.4.14.11) # Organism: L.buchneri # Pathway: not_defined # 1 806 1 805 809 1224 76.0 0 MKINQFAYVPTPHHQIVKELANSRFLSARTQKMADPVMLYRALLLKFFMEKRQSRAVRIQ KVTNLMATATLNAYDYTTTQSIVTKTAFYNVALQLLGFQVGLDFELDHPFAAMAQFKLPI ANVDDQLSREQLVDAWYRLLNTRTKFGQTLIDYLAGEGYYAQFYDDQNLNRPLFFNGKAQ AVFDTSSLISDVVYVEAPLDTDHDGQRDLLKAEIIRPANTEDGLKVPTVFTASPYDQGTN DEAADKLTHDVNHPLSRKQPNQLTYEDIQASDEQPKLPAPRKVNGDTDVAEETFVKTWTY SLNDYFLARGFAVVYSSGVGTKDSDGVRTTGTRAETLSATAIIEWLHGDRTAFTNRTDQI GIKAWWSNGNVGMTGRSYLGTLSTAAAMTGVAGLKTAVVEAGISNYYDYYRENGLVVAPG GFQGEDTDVLGELTFSREQSAADYLKIKDTWLDQLKKLTSGQDRDTGNYNSFWDARNLLK HVNIKCDMLLVHGLNDWNVKLSHVWNLRNRLKKEAITQKLILHQGQHEYLNNFRSVDYTD LVNLWLSNKLYDVQNNANDILPDVLVQDNAEPETWHTYQDWGNPSADTYSLSDSRFTNLN ENNVFSDHLDDDLFKNYVKDTAKWQRALFNKSHTKMDKHAIQLISEPLKKDLIVDGQAKL TLSAASSETIGLLSAALVDYGKAKRLTAVPQILAAQKIITGYNWRKDNLREFTFEKKAST YKKFTDAHMNMQNRQNSYRVDDLKPGQYYTVELAFQPTFWRLLAGHQLGIIIYATDMDYT IRGNQDITYTIALDESKLEIPFLPSDANAK >gi|238617815|gb|GG669606.1| GENE 350 389306 - 390526 864 406 aa, chain - ## HITS:1 COG:lin2118 KEGG:ns NR:ns ## COG: lin2118 COG4753 # Protein_GI_number: 16801184 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Listeria innocua # 266 400 358 491 494 84 34.0 3e-16 MIKEDAIYIAKALQITTKLDVQLVDLSGNQFYQSTSYALPKFQDLPDTNQLLPILNQHHS NDYLHYNNAAQLEYLAIGLFNDDNLAGACLVGPFISKAATIDSINQILLTTHLTVSERRQ LTQFYNALPILNTSEIGATGDLLVNLFSAPAIKAHAVQLLKPDQPLHAKTVQAINAENQQ AIEKRYQLEADMMQLVATGNLDKISQFQQPLTQLISLFSSRVPNQPLRSGKNICFVNNTL CRIAAKQGGVHPVFLDSISEKSAVLIEKQNTIQGLKNLVLSMLRDYTQLVMDTSSANFSP IVKRAIDFILIHLGHQFSLADAARQLSTNPAYLSRKFKEETGLTFTAFTNHRRIKIAKDY LVNQQLSITDIAGLIGYNDLTYFTRVFKKQTGQTPLQYRKTSYSHS >gi|238617815|gb|GG669606.1| GENE 351 390703 - 392556 1454 617 aa, chain + ## HITS:1 COG:uidA KEGG:ns NR:ns ## COG: uidA COG3250 # Protein_GI_number: 16129575 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Escherichia coli K12 # 1 602 1 596 603 496 45.0 1e-140 MLYPMTTPSRALIDLSGLWKFMIDKEVQPIDPKQPLPTEDVISVPASFNDQTASQEIREH VGYVWYETNFSIARALRSERLVLRFGSATHEAWVYLNGQEITHHKGGFTPFEVVINDYLN DGNNRLTVKLSNVLDYSTLPVGNYSESTDEDGHVVRHLDENFDFFNYAGLQRPVKIYSTP KDYIQDITIVPNVDLDRSSAEIEIKTQISDGLDKVKVTILDQDGHPVAEVSGTDSSVTLT DVRLWQPLNAYLYSAQVDGFKNGELVDSYSEAFGIRKIEVRDGQFLFNGQPFYFKGFGKH EDTYVHGRGFNEPVNVLDINLMKDMGANSFRTSHYPYSEEMMRLCDREGIVVIDETPAVG LMASFDFNLSILEQDDFEDDTWKTMKTAAAHQQVIQEIIDRDKNHACVAMWSIANEAATF SKGAHEYFKPLFDLARRLDPQKRPCTYTSIMMANPRTDKCIDLVDVIALNRYYGWYVGNG DLKTAEKATRDELLEYQAKFPEKPIIYTEYGADTVAGLHSNYGEPFSEEFQEDYYRMASK VFDEIPNFVGEQLWNFADFQTKFGIQRVQGNKKGIFTRSREPKMVVRYLKNRWTAIPNLG YKVKSDTQDQAKKLTTK >gi|238617815|gb|GG669606.1| GENE 352 392658 - 394112 1446 484 aa, chain + ## HITS:1 COG:ECs2323 KEGG:ns NR:ns ## COG: ECs2323 COG2211 # Protein_GI_number: 15831577 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Escherichia coli O157:H7 # 34 470 5 433 457 188 31.0 2e-47 MDKTQAVSTTHDKTQEAASLQAKQTITITDAHPFGWKDKIGYMFGDIGNNFSFNMVNSFL MIFYTNVLGLSGAMVGLLFLIARLVDAVADVTVGRMVDNSQLTKEGRFKPWVRRMKYPLL VFSIVLFVPWVKDLSMGLRLGYVFLTYLLWGIFYSAVNIPYGSMASSLSDQPSDKTSLST FRSIGAAVGGSIVAYVVPLFMYVGSSTQISGERFFIVVIACSILGFLSYIVLTKMTSERI RTEKSEPVPMKLLLVNLLKNKALIVLVIVDIVVVINQNLSMVTIAYLFNDYFRNTAAMSV AMIFNYVIIIILAPFSGWIVKKYGRKESSVVALFFGAAIYTTLAILHTHSVIVYLAMVLL GALGAGMFSMMVWAFITDVIDNQQVLTGIREDGMVYGINSFSRKVAQALAGGFGGIMLTL IGYQSSAAGGVVQSDAVANSIYYMATGIPAVCCGLAAIILLFFYPLNKKQVIKNAEILRN AATK >gi|238617815|gb|GG669606.1| GENE 353 394244 - 394444 222 66 aa, chain - ## HITS:1 COG:BS_cspC KEGG:ns NR:ns ## COG: BS_cspC COG1278 # Protein_GI_number: 16077579 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Bacillus subtilis # 1 66 1 66 66 92 74.0 2e-19 MEQGTVKWFNGDKGYGFITLENGSDVFVHFSAINADGFKTLEEGQKVTLDVEKGDRGLQA ANVTPA >gi|238617815|gb|GG669606.1| GENE 354 394808 - 395557 716 249 aa, chain + ## HITS:1 COG:mll2196 KEGG:ns NR:ns ## COG: mll2196 COG1028 # Protein_GI_number: 13472033 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Mesorhizobium loti # 6 249 7 242 242 181 44.0 2e-45 MAKQLTTLITGADKGIGFQTALELGKRGHHVLVGARDVGRGKEAVDRLTKSGITADLLEI DVTDRTTIQAAASQVMTKFGYLDVLINNAGVALDQHQPASELSTEVMQNDFNVNFFGAVD VIQAFLPLLKKADTAKIINVSSNMGSLGLATNPASQFYGINSLGYQASKAALNFATICFA KELADTTITVNSVNPGWTATEFGGRDLKQSMPTGMQSVKTGAAQIVKLASDPENKITMTF TENQGTLPW >gi|238617815|gb|GG669606.1| GENE 355 395619 - 396767 1068 382 aa, chain + ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 1 379 1 376 379 259 43.0 5e-69 MGYIGQIALILIATLLAGAISQRLTMPAVIGQLLVGVVLGPGVFNVLQNTELMHAGSEIG VIMLMFIAGIESDLDLLKKYFKPAMNVAMIGVLFPMVVFYGYGQLMGQSFEKAIFWGVIF AATSVSISVEVLREYHSLNTKEGATILGAAVVDDIIAVILLSIFVSAFGVGDSQKMNLVQ STLFQLLYFAGVVVLVKWLAPIILRVAKRLPVRGAVPITSLFLCLSMAWLADTIGLSSVV GAFFAGVAVSQTDFQDEVSDSISSVGYTFFIPIFFVSIGLDMTFGGLLHNLGFVIVMTLL AIVTKLFGGAIGAAITKMNWHSAFAIGSGMVSRGEMALIIAQIGLSAHLLATNLYSEIII VIVLSTIIAPMLLKWSLKKTGA >gi|238617815|gb|GG669606.1| GENE 356 396811 - 397239 458 142 aa, chain + ## HITS:1 COG:PAE0714 KEGG:ns NR:ns ## COG: PAE0714 COG0494 # Protein_GI_number: 18312122 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Pyrobaculum aerophilum # 4 140 5 140 145 60 35.0 7e-10 MVTEFASGAVVYNVQDGDICYLLLQSATDDFWGLPKGHVEPYENLIQTAVREIKEETSLD TRIDAKFKETIDYDMKNGHHKTVTFFVSKVAPNVSVTRQVEEINSFGWFNYKDAYDKLTY DNLRQLLKDADRYIRTKEEIGD >gi|238617815|gb|GG669606.1| GENE 357 397246 - 397809 473 187 aa, chain + ## HITS:1 COG:NMA1919 KEGG:ns NR:ns ## COG: NMA1919 COG0194 # Protein_GI_number: 15794804 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Neisseria meningitidis Z2491 # 5 180 9 184 205 88 33.0 8e-18 MENRVFVITGAAGSGKTTIRNYLHDKYGMPRVITHTTRPPRENEKNGVDYYFETKDSFSH NHYLESVLYAGNYYGSSYEGLENAWQKKSCACIVLDGAGAVTYKRKLGEKAVIIFLKVGD TEILKKRMEIRGDDTTMVAKRVKSEEYARDLEMPTQLKGKAFEILNTDLKRTKAQVDKIV AKYPHEG >gi|238617815|gb|GG669606.1| GENE 358 397913 - 398356 125 147 aa, chain + ## HITS:1 COG:BS_zur KEGG:ns NR:ns ## COG: BS_zur COG0735 # Protein_GI_number: 16079565 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Bacillus subtilis # 5 141 3 135 145 112 39.0 3e-25 MPAAIEEATRLLKTNNFKITKQRKAMLEYLVDTATKRFVEVTSIDDFMRQTFPKMSHNTI YRNISEFADLGIVERQIQGDRASVKFQCDFQHEHHHHFICSNCGKVIELKDCPLSDAITA QLGGCEITGHLFQIYGLCPECANLKNN >gi|238617815|gb|GG669606.1| GENE 359 398432 - 399094 644 220 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509834|ref|ZP_03939883.1| ## NR: gi|227509834|ref|ZP_03939883.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 181 1 181 220 134 100.0 3e-30 MDNRIPPLVTPFAILSICLALGATNVVANKVTGTSEGTPTSTQTTSQKNMTNSIYGKTTP KKDDTSNNDKAKESSEKAKESSEKAAKESSLKEKQKESSSAKKASSDANESSDTNTDDTS SSDNGTTGTTTKKSGTTTNKSNTNSKSNTGTTKKSNNTTGNTGTTGDTNKDNTTDNQTTG QTNDGNTGNTGTTTNNSPTNSTGTNNDDTTTQQNTTGGGQ >gi|238617815|gb|GG669606.1| GENE 360 399094 - 399930 714 278 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1837 NR:ns ## KEGG: Lbuc_1837 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 278 1 274 274 398 70.0 1e-109 MFSFLDMINHYLGYFNINVAVKSRIYTVLGFLGNIYLFYISFRFLQNKFYSKGFLLLAVS IILFYFLICNFFYYFTKKQPWFDISPKLARMLHLQPHEKEIQANSKMGNTVIQEPYNRQD NAANGIFDEQHVLPAKIDVSPSEQMNLNRLVAQMQQQQLFRADYNGMDDRKLYELLKING GKPIYAIGKGVMMPYFEMRHQNNALIVYAGLNQAEIYPVGSIKRVGLQSIRSIDLSDLKL YLASAELFGGPYKEIGRVGILEHTQNYTLRVSVAYKKL >gi|238617815|gb|GG669606.1| GENE 361 400411 - 401151 521 246 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 243 1 242 245 205 43 3e-51 MAMIEFQDVQKYYGNFHALKDINLKIEAGETVVLIGPSGSGKSTLIRTVNGLERIQEGKL IVNGQDLANKKTDINRIRKNVGMVFQHFNLYANKTIMENIMLAPRIVLHRNEDENRKIAL ELLDQVGLRSQAEKLPAQLSGGQQQRIAIARSLAMRPKCLLFDEPTSALDPEMIDDVLNV MKDIARDSDMTMLVVTHEMGFAREVANRVVFMDDGRILEDDSSEKFFDGEPTNERARQFL GKIITH >gi|238617815|gb|GG669606.1| GENE 362 401175 - 402008 883 277 aa, chain + ## HITS:1 COG:BS_glnH KEGG:ns NR:ns ## COG: BS_glnH COG0834 # Protein_GI_number: 16079797 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 1 263 1 266 273 245 51.0 6e-65 MRKILSKVGLVVALLIMVVSLGACSSTSGSKRDVLKDDKQSNTITWGVKADTKLFGLMDV KDNQIKGFEVDLAKAMTKEILGKKGKARFIQVTSQTRMPLLANGNIDAIMATMTITPQRA EQVDFSRSYFDAGQAILVKDGSPIKNVRDLNRKGAVVLGVVGSNSVQNIKKFAPKARVLQ LSDYSQALTALKSGQGDALTTDNGILYGMSIENPGYSVVGGTFTKEPYGIATAKGQRPFH NAINHALTKVENSGEYNKLIYKWFHNVKGFDMKGAER >gi|238617815|gb|GG669606.1| GENE 363 402005 - 402643 620 212 aa, chain + ## HITS:1 COG:BS_glnM KEGG:ns NR:ns ## COG: BS_glnM COG0765 # Protein_GI_number: 16079798 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 2 211 3 212 216 183 50.0 2e-46 MISIFQNYGGELLTGLGQTLLCSIIALIFALIIGSAFAIMETMPNKFARVVARVYIEVFR NIPLLVITMFFYVVIPMYIVKISGFASGTVGLTLYSSAFIAETVRSGIQSVDPGQMEGAR STGLSYWQSMRYIILPQAFRYVIPPLGNQFINLVKNSSVLAFVAGFDLMYQANVIASDSL QSMSTYMCVGVLYLILTLPLSYYMRHLEKKLA >gi|238617815|gb|GG669606.1| GENE 364 402659 - 403366 599 235 aa, chain + ## HITS:1 COG:BS_glnP KEGG:ns NR:ns ## COG: BS_glnP COG0765 # Protein_GI_number: 16079799 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 2 215 1 216 218 202 51.0 3e-52 MLTVLGAYSWVNIKFLLEGAWVTILVSVCSIVLSYIFGVILGVTRYVQIKYLSAIVGFVI DIIRNLPLILIIFFTYFGLPHLGFKPDPIWASVIAMAVFEAAMVAEIVRAGIASIPTGQM EGARANGLSYWQALWYIVLPQAIRNMIPAIVSQFISLVKDTSLATIIVLPDLMNHAQIIY GQNTNYTIPMFLALAVMYFIVCYSLSLFSKYLEKRIGGGNKKGKADEVVQDASDA >gi|238617815|gb|GG669606.1| GENE 365 403471 - 404133 550 220 aa, chain - ## HITS:1 COG:CAC3658 KEGG:ns NR:ns ## COG: CAC3658 COG1285 # Protein_GI_number: 15896891 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Clostridium acetobutylicum # 1 217 8 228 229 166 38.0 4e-41 MEWVLRLLVAAVCGGLVGFERKSRLKTAGIRTHMLVAVGSALFMIISKYGFFDLVGHSNI GVDPSRIAAGVVTGIGFIGAGAIMTRNNQIDGLTTAAGLWATAAIGLAVGADMYIIGIAG TLCILVTQTIVRRIRALKRYPNRSLLRLQVTLAGQLTEMEKLPERLKSLGSLNIQMRIVK YDPDSFTLAVTVRLKKKVNSNNFIKKMSEFADVKEIEVLD >gi|238617815|gb|GG669606.1| GENE 366 404345 - 405748 1273 467 aa, chain - ## HITS:1 COG:BS_ykbA KEGG:ns NR:ns ## COG: BS_ykbA COG0531 # Protein_GI_number: 16078351 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Bacillus subtilis # 9 438 8 435 438 397 48.0 1e-110 MKQQKEVSLDRDLGLWSALSLVIGTIIGAGVFVRQSAVLDDAGSTTMGLLAWLAGGILTI TAGLTIAEIASQMPETGGLYVYMEKIYGRIWGFLSGWMQIVIYGPAMIASLGAYLAILLS DFFGFPSKYNALIAIGTIILVGILNLFSNRYGATFAIITTLCKLVPVAALIIFGLFFGKQ GALGQSISEVHQSAGNFGVAILATLFAFDGWILIANLGGEIKNPRKLLPQAITFGILAVL VIYMLVSYGVYRAIPAEKIHSMGTGAIPFIATTAFGNVGGKILSIGIIISIVGCMNGKIM TFPRIMYAMAKRNQLPFSKTLSYLHPKSHTPIFSTIAELIIVAIMIVFSNADRLSELCIF TVYCFYVMAFVGVFLLRKRNPNQHRVFSTPLFPLTPIVAIGGSLFVIVSEIMSDLPGVLT SFIFVAVGVPVFYYETKKHGIVEPKNEDAPIDEDDDSVNENRVKSNG >gi|238617815|gb|GG669606.1| GENE 367 405801 - 407084 591 427 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 38 421 44 424 425 232 37 2e-59 MDLTQTLTPVVTIGLNQHPNSFDYSMTELNNLAEANNMEVVETLIQKLDKPDPATYFGKG KIEELTQVVIDDGVDTIVANDELSPSQIRNIEKATKVRIIDRTGLILEIFANRAQSREAK LQVELAKLKYQLPRLHTSASQRLDQQTGTSSGGGFTNRGAGESQYELNRRTLENRITHVN RELKESSKADQTKRKQRDKSDTPTVALVGYTNAGKSTIMNGMINLFGNNDDKQVMVKDML FATLDTSVRKLSLPDQKSFLLSDTVGFVSQLPHQLVQAFKSTLAEAANADLLVQVVDYSD PHREMMIKTTEETLKEIGVDNIPMVVALNKADKMDIAYPTREGDNLIMAATDQPSLKELA NIIKEKVFKDYQTRSLLIPFDKGDIVSYLNDNTTILKTDYRENGTVVTAELNSVDAKRFE KYLLPTE >gi|238617815|gb|GG669606.1| GENE 368 407404 - 409020 1314 538 aa, chain + ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 24 534 36 554 559 327 38.0 5e-89 MKIRSFAKLGGAIALSALVLAGCGSNSSQSKKKELNWVQQSNMTTMDISKVTDQIGAQTL NNSNEGLLRMAENNKVIPGVAKNYTVSKDGKTWTFNLRHSKWSDGSPVTAKDFVYSWQRT VNPKTAGQYAYIFANIKNATKINSGKMSPSKLGVKADGNYKLVVTLEKPQSYFKYLAADV EFFPQKASAVKKYGSKYGTTSKDMAYNGPFKMTGWTGTNDTWHLVRNKNYWNAKKVKLDQ VNFQVIKTPETFLNQYQDNKVQVTPLVGQQVKQYKTNKNYVLRSNAATWYLEMNQHKYKF FRNINIRKALSLTIDRKQFTGKVLADGSMPAKGFVAADMSTHNGQDYADAAYEKDAVESN LALAKKYWAKGLKQTGKKSVSFNLMADDTDAGKKTTEYLQSRFTKLPGLKITNENIPYKT RLARSQDGQFDMVVTEWVADFPDPITFLQLMQSNNAYNNGPWQNKEYDKLTTDAEGRDAN KPNARWNDMVKAGKLLANQEGVIPLYQQAQPQLVKSGVKGIQAFPTAPLWDWSKVTVK >gi|238617815|gb|GG669606.1| GENE 369 409423 - 410907 1066 494 aa, chain + ## HITS:1 COG:SA0849 KEGG:ns NR:ns ## COG: SA0849 COG4166 # Protein_GI_number: 15926579 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 491 46 537 551 333 38.0 4e-91 MDISKMTDMISDTTLNGSNEGLLRMVKGNKLIPGVAKSYHVSKDGLTWTFNLRRSEWSNG TPVTAKDFVYSWQRTITPRTAGEFAYTFDHIKNAKAINAGKMAPSKLGAVAKGNDQLIVH LTKPQSYFKYLVSQAYFFPQSQAAVKKFGTKYGTTSQDMIYNGPFKLTGWTGTNDTWSLV KNNRYWHKDAVKLDQVKFQVEKDPSTVINQYQSNKLDVAVLSGQQVQQYRHSKQLHIRKN AQMWFMEMNQKKHPFFRNRNIRKAISLSINRKQFTKKVLQDGSTPSKGFVALGLGRRHGK EFADEAYVKAAVTNNAKKAKQLWAKGLKQTGKQSVTFTLLADDTDSGKRSAEYIQSELTK LPGFKVNVENLPFKTRLTRSSNGQFDMVLSSWTGDYPDPMTSLSNMTSHSSYNNGKWTNR QYDRLIAEAEGEDANKPQQRWQDMVKAEKVLANDEGIVPLYQAAVPQLVKPGIKGIQFFP ESPEWDWSQVYKSE >gi|238617815|gb|GG669606.1| GENE 370 411188 - 412807 1287 539 aa, chain + ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 27 535 38 554 559 328 38.0 1e-89 MKLKSVMKIGGVGLLSALVLAGCGSKSSQSANSSQKVKWMIPAAISSMDASKITDLYSSQ VLNATNEGLLKMGENKTTPGVAKSYSVSKDGKTWTFNLRKSKWNDGKPVTAKDFVFAWRR TVTPKTASEYAYNFANIKNASKINSGKMSPTKLGVQADGNYKLVVHLVKPQSYFKYLVSQ GYYFPEEQAAVKKYGSAYGTSAKKNAYNGPFLLKGWTGTNDTAKLVKNKSYWNAKNVKLQ QMSIQTVKDPATALNSYESGKLDFTTLNGTQVKQYKNNKDYHDYLEASTSYMEMNEKKDS IFKNKNIRRALSLAIDKNQLASKVIADGTKGAKGYVPTKMASRNGKDFASQAYVKAGVEY NLTEAKKLWAKGLKQTGKKSVSLSLLCDDIDQTVKNAQFVQSNLEKLPGLKITIQNVPFK NRLSRSQNGQFDLVLSAWIADYPDPSNFLDLFTSTNSYNNGNWKNSEYDALIKKSESTDA NNEAARWNDMVQAEKILMNDQGIVPLTQEAQSTLMKSKVKGVQFFPTSPQWDWSKVSVK >gi|238617815|gb|GG669606.1| GENE 371 413236 - 414861 1153 541 aa, chain + ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 26 537 35 554 559 358 40.0 2e-98 MKINSIAKLGGVVLLSVLVLAGCGSKSSQSGSKKQELRWQESSNLPTMDLSKATDQVSAE TLNATNEGLLKMSTNAKVTPGVAKNYTVSKDGKTWTFNLRHSKWSDGTPVTAKDFVYSWQ RTLTPKTASQYAYIFDHIKNATKVNAGKAPVSSLGVKADGDYKLVVTLNRPQSYFKYLVA NAEFFPQKESAVKKYGSKYGTQSKYMVYNGPFKLTGWSGTNDSWTMVKNNNYWNKKNIKL DKMKIQAVKDPATSLNQYNTNKLDAINLVGSQQVSHYKNDKDYKSFLNASTFYLEMNQKK DPVLRNINIRKAISMSINRKQLTNKIFADGSVPARGLVAAKMAYRNGKDYADQAEVKSAD SQNLAEAKKLWAKGLKETGKKSVSLNLLSDDTPNGKNTTEFLQSQLTKLPGLKITNQNLP FKTRLQRSQDGNFDLVISAWIADFPDPISFLSLFTSDNSYNNGKWKNSEYDTLIKNAEGK DALNAGKRWDDMVQAQKVLMNNQGIVPLYQQSTAKLINSKVKGVQFFPTAPEWDWSKVSI K >gi|238617815|gb|GG669606.1| GENE 372 414992 - 415912 798 306 aa, chain + ## HITS:1 COG:lin2299 KEGG:ns NR:ns ## COG: lin2299 COG0601 # Protein_GI_number: 16801363 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Listeria innocua # 1 305 1 305 309 335 55.0 7e-92 MAKYLGKRIFYIILTLFIVTTVTFFLMKFMPGTPLTNQAKLSPSQIHQIYKQYGLDKPLW QQYLTYLAGAVHGNFGTSYQFSDQPVSYLISSRLGPSLTIGGEAMVVGVLIGIIVGSIGA VKQNTWIDTTATILSILGVSIPSFVLAVLLQYYLGLKLRLFPIADWGGFMYTVLPTLALA ASPFAETARFMRTEMVDVLSSDYIELAKAKGLNKTGIIYHHALRNSLIPIVTIVGPLAVN IMTGSMVVENIFSIPGIGEQFVKSILTNDYPTIMGLAIVYCAMLCVVLLITDILYGLIDP RIRINK >gi|238617815|gb|GG669606.1| GENE 373 415927 - 416961 931 344 aa, chain + ## HITS:1 COG:lin2298 KEGG:ns NR:ns ## COG: lin2298 COG1173 # Protein_GI_number: 16801362 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Listeria innocua # 25 340 20 341 344 327 55.0 2e-89 MADNAKSIKTGDFLPLSDVDRTHLDSEKIAAPSLTFLQDSWRRLRHSKAAMICLVILVIL FILSFGSGLFQTHNPNATNPDLANLPPKIPGIDINGFNGTIMQSGTRINAYAQAHAHAGT YYILGTDYLGRDLFSRILFGTRISLTIALVASFFDLAFGVVYGIISGWLGGWVDTLMQRI IEIILSIPNLIVMVLLIVVLKPGMSAIIIAIAITSWVNMARLVRAQTLELKNQEFVLAAR TLGESSFKIAFKHLLPNLASVIIINLMFTIPTAIFFEAFLSYIGIGVSAPQASLGTLISD GQKNFQFLPYQMWYPAIVLSIIMIAFNILGDGLRDAFDPKSNRK >gi|238617815|gb|GG669606.1| GENE 374 416972 - 418069 1028 365 aa, chain + ## HITS:1 COG:lin2297 KEGG:ns NR:ns ## COG: lin2297 COG0444 # Protein_GI_number: 16801361 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Listeria innocua # 5 359 2 356 358 488 69.0 1e-138 MENEKNVLEVRNLKINFKTYAGKVQAIRNVSFDLRKGETLAIVGESGSGKSVTTRSIMGL NAPNAEIADGTIMFKNQDLLKKTRKQMDQIRGRDIAEIFQDPMTSLDPTMKIGKQIAEPL IIHKGMKREKAYAQALEMMKLVGIENAEKRINDYPHQFSGGMRQRIVIAIALVNYPEILI ADEPTTALDVTIQAQILDLMKELQAKTNTSIIFITHDLGVVAGMADRVAVMYAGKIVEYG TVDEIFYNPKHPYTWGLLNSMPTMDTSGTELPSIPGTPPDLLNPPKGDAFAARNKYALKI DTEQEPPFFKVSDTHYAATWLLDPRAPKVTPPDQIIERQKHFAKLTHEAIDTNRGKHVEE QEEQL >gi|238617815|gb|GG669606.1| GENE 375 418066 - 419028 757 320 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 7 271 8 276 329 296 56 1e-78 MIDYSKAKKVLQVEHLKQYFNVGKADEVRAVDDITFDVYQGETFGLVGESGSGKTTTGRA IIHLYEPTSGKILFKGEDVSKLRSKAQKKTFRRDMQMIFQDPYASLNPRMKVKDIVAEGI DINHLAKNDADRTKQVEDLLETVGLNRDHSSRYPHEFSGGQRQRIGIARALAVQPEFIIA DEPISALDVSIQAQVVNLLKKLQRERDLTYLFIAHDLSMVKYISDRIGVMHYGRMLEIAS SDEIYAHPLHDYTASLLSAVPVPDPEYERARQQIPYDPSKEFDGKPRQLVEIVPNHWVRA SEDEIPMYRERARKHSLLKD >gi|238617815|gb|GG669606.1| GENE 376 419133 - 419786 626 217 aa, chain - ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 3 214 5 219 224 124 36.0 2e-28 MTISLYFVRHGQTYLNKYHRIQGVIDSSLTEKGINDALDAGQRLSTIHFDAAYSSDLPRA IETGRLILSQNPSDTKTTTPLAGFRELNFGYWEGEDDVKTWHIIGGPHGLNSFHDMIAEY GIDKAEDTIAAADPYKDAETSQAFWNRLQPAIDQTVKNAKDGDNILIATHGTLIRNVVSH FSDIPVNVSTKNGSVTKVNWDGTNYTVDYFNNVSKNV >gi|238617815|gb|GG669606.1| GENE 377 420062 - 422356 1691 764 aa, chain + ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 8 762 10 771 774 525 39.0 1e-148 MADNIKIQEQRHLNSVIKKIKISETDLEKKIKSTKKDVKDIYANFNNDVHLKTSTYSGMM ETAMSIRQQQQMLSERENRQEHAARELGTLNKLEKNPYFARIDFREGTEDHDETIYIGMA SYTDKPDHYLIYDWRAPISSIYYNGGIGDVTYQTPDGDQTVDVKLKRQFQIEDSKIKTVF DTEEVVGDQMLLDALGSHSDTKMKSIVTTIQKEQNQIIRDTSSELLFVQGAAGSGKTAAV LQRVAYLLYQYRGHLNSGQIILFSPNQLFNDYINQVLPELGEQNMVQMTFYQYSSHRLPS VKVETLSQRFDDQLEEKTQQLNEFKGGLDYFKAVSAYANHLNTEDMRFRNLMFDGKVLIP KEKIQEIYYSFNENYNLRNRLSATKDQLLKILNRRVHVEMKKKWVEEAVQNLSREEIMQM HKEGEEEILNSDKEFNFLARRIVIKAFRRVQRQIVRSHFLSINNQFVHMLRNVPQILDLD QHGIEPEAWKQDINATVGRLKEGRLSLADATAYIYLYDLMTGKRGDKDIRYLFIDEVQDY SAFQLAFLKFSFPRAKFTLLGDLNQAIFTHENSRKLLGELSSMFPAEKTRVVQLTKSYRS TEQITNFTKHILTNGEEIIPFNRQGELPQIHVAPGMDAAVEQVKNQAEENLSEHETTAII GKTLKECQQLATKLAEVGVKSTLIRTENQRLVKGIIIVPSYLAKGLEFDSVIMWDASKAC YPDERDRQLVYTICTRAMHRLTIVATKELSPIFETVPEEEYQFI >gi|238617815|gb|GG669606.1| GENE 378 422492 - 423415 574 307 aa, chain + ## HITS:1 COG:L66222 KEGG:ns NR:ns ## COG: L66222 COG1072 # Protein_GI_number: 15673426 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Lactococcus lactis # 1 307 1 306 306 317 51.0 3e-86 MDDLINYYSFTKEQWKHFYNEIDLPLTQSGLRHIKAFNDRISIQDVSDIFKPLVHMIRLQ KDNFDQWQTIKARFLHKRVRSVPFIIGISGSVAVGKSTTARVLEELLTNYFTGENIKLIT TDGFLYSNAELKKRGILDRKGFPESYDMAKLIRFLNAVKSGVPVIQSPVYSHQSYDIIPN RFDIIDRPDVLIVEGINTLQLPSNEQIYVSDFTDFSIYMDAEESLIEKWYLERFGRLMDT AFQDPHNYYYKYAIGDRDEAFEMAKDVWRTIDLPNLKANILPTRSRADMIMHKTDNHIID RLYLRKY >gi|238617815|gb|GG669606.1| GENE 379 423437 - 425053 1202 538 aa, chain + ## HITS:1 COG:SP1445_2 KEGG:ns NR:ns ## COG: SP1445_2 COG0519 # Protein_GI_number: 15901295 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Streptococcus pneumoniae TIGR4 # 223 538 1 316 316 512 76.0 1e-145 MLTNHSKIVYYLCSNFERVYDLANVDLSSFDKILVLDFGSQYNQLITRRIRDLGVYSELK SHKLSANEIKQMNPKGIIFSGGPNSVYEEGALRVDPDVFKLGIPILGICYGMQLMAFTLD GKVEKADNSEYGHADIEVTSNDAVLFENTPRKQTVWMSHGDLVTDVPSGFENVATSEDCP ISAMQDVNRNFYGIQFHAEVRNTQFGNEILKNFAFNVCHAKSNWTMNDFIDLQIQHIRET VGDKKVLLGLSGGVDSSVVGVLLHKAIGSQLTSIFVDHGLLRKNEAQQVMDSLVGKFGLN IIKVDAQERFLSKLEGVTDPEKKRKIIGNEFIQVFNDEARKLDGIDFLAQGTLYTDVVES GTDTAQTIKSHHNVGGLPKDMKFKLIEPLNKLFKDEAREIGEKLGMPESLVWRQPFPGPG LGIRVLGEVTPDKLRIVRDSDFILRDEIAKAGLQRKVWQYFTVLPGFKSVGVMGDGRTYD YTVAIRAVNSVDGMTADFARLPWEILQKISTRIVNEVDGVNRIVYDVTSKPPSTIEWE >gi|238617815|gb|GG669606.1| GENE 380 425480 - 425896 382 138 aa, chain + ## HITS:1 COG:no KEGG:SEQ_0816 NR:ns ## KEGG: SEQ_0816 # Name: not_defined # Def: phage protein # Organism: S.equi_equi # Pathway: not_defined # 12 136 1 123 125 87 42.0 2e-16 MKGKIKVKKNNIVIYPAIFGPEPDGSAINVTFPDVPEAITYGRTEEEAVYSANEALGLAL ASRKDLPKPSTIQSIKPEEKGDYMVMIAVDLEDAKRKIKKPTVKKNTTIPADLDEKAKKA GINFSEVLTNALREKLNE >gi|238617815|gb|GG669606.1| GENE 381 426429 - 428963 2058 844 aa, chain + ## HITS:1 COG:L102360 KEGG:ns NR:ns ## COG: L102360 COG0308 # Protein_GI_number: 15672287 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Lactococcus lactis # 4 841 3 841 846 870 51.0 0 MTELKRFYETFQPTHYNIYLDINRENKKITGKTTISGNAKESTISIHQKDLAVDTVQAND QDVSFTIDRDNDAIRIDLPQAGETTLTVTYTASLTDSMMGIYPSYYEVDGVKKQIIGTQF ETNFARQAFPCVDEPEAKATFDLAIKFDEHAGETILSNMPEKKVENGVHYFDTTVRMSTY LIAFAFGELQSKMTTTKSGVKVGVFATKAHKANELDFALDIAKRSIEFYEDFYQTPYPLP HSWQLALPDFSAGAMENWGLVTYREAYLLLDPDNTALDMKQLVATVIAHELAHQWFGDLV TMKWWDDLWLNESFANMMEYVAIDAIEPDWHIWETFQTSDVPAALQRDATDGVQSVHVQV NNPAEIDALFDAAIVYAKGARMLVMVRALLGDDALRAGLKKYFEAHHYGNATGADLWAAL GEASNLDVGAIMNSWLDQPGYPVVSASVIDGNLTLSQQQFFIGEGKEAGRQWRIPLNGNY DVAPEIMDQQQVNLGNYNDLRKANGKPFRLNVGNNSHFIVKYDKTLLDDILADATSLDAI SQLQLLQDLRYLAEGHQLSYAALVPLLSKFADSHATIVNAGLYRIANDLKKFVLAESKEK KQLQALFDQLSSKQVARLGWTGKAGESNDDQLTRPIVLNAALYAENEKAIASAHELFSAN SDKLETLSAAIRVFVLRNEVKNFGSEALFKKLLTAYRQTSDASYKSDICSALTSTTDPAL IMKLVESFEDANTIKPQDLRAWFRGVLANEDGQQAAWDWIRNDWQWLEDTVGGDMEFSTY ITVIASIFKTPTRLAEFKAFFEPKIQTPGLTREIQMDIKVIETRVKLIKDERQAVNDAVS EAVK >gi|238617815|gb|GG669606.1| GENE 382 429269 - 429859 419 196 aa, chain + ## HITS:1 COG:lin1193 KEGG:ns NR:ns ## COG: lin1193 COG1286 # Protein_GI_number: 16800262 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for colicin V production # Organism: Listeria innocua # 18 166 12 169 180 64 29.0 1e-10 MKREFKLILDLIIIVLLIGGLISGYRAGFINQSVRIVSLILSFMVAIYYFQPTANIMINI AKKIGFAPGIQWLYVSDIVAFVLLFALTHAVYIMLGSHLNGIAKVPGFHLGNSLLGSVIG GITQYLIIFFVLNILIVFPISWVQDQYQESQISQTIVKKTPILSKRESRTQTIKQGALSS SIVFLNKQGGSSNEVD >gi|238617815|gb|GG669606.1| GENE 383 429846 - 430529 675 227 aa, chain + ## HITS:1 COG:no KEGG:LVIS_1020 NR:ns ## KEGG: LVIS_1020 # Name: not_defined # Def: Zn-dependent protease # Organism: L.brevis # Pathway: not_defined # 38 226 25 217 217 152 43.0 1e-35 MKWINRLVAVVVVLLTLNIFIQPDSVKSIGKRVNNAVDLPAMLKTEIDKTATHVKNAGTA QTNSGETPIESIVQGRKLSNKYYYHFASGVPEQAKKVFLQAVDKYNETGIVKLMPLSGQT KSQSNEITFYVYHKRVETGSGAVELGLGGPKIYPWVGSHNYDLNRGKAGLNAEYPQSSMQ LSVTMHEIGHVLGLDHSMKRSSIMFPVDQGRTSFSKEDLATLRKIYQ >gi|238617815|gb|GG669606.1| GENE 384 430614 - 431912 778 432 aa, chain - ## HITS:1 COG:MA1121 KEGG:ns NR:ns ## COG: MA1121 COG0534 # Protein_GI_number: 20089987 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Methanosarcina acetivorans str.C2A # 1 430 24 457 475 167 28.0 5e-41 MLKMAPPVMISLFAQSIYNVVDSYFVTKYALEALTALSIIYPVQLLMIAIATGTGTGINI LIAHLDGSQAVHRQETVVKSGLFLGFLNYFAFACIGLLLIKPYYQLSSSSTTVQSLGRTY AFIILIGSVSLFIEAVVTKMLQAKGQMRWPMIAQICGNLINILLNPLLIFGRLGFPKLGI AGSALATITGQLAALLIVISQLHHYYALNGQISRKVCVAIYHQGSASILLQSLYTVYIVG LNLILKQFTGLAINVLGIYYKLQAFFFIPLEGLQQVILSIISFSFGAKQLIRIKETVRLA LLIACSVTIIGALAFICFPRQLLGIYSSDFELRQIGVHAFRVIGSSFIPAGISMMLVIYF QATNQLQKSIWVSLTRELFLLVPIAWLLQFWGLAYFWYTFPITEILTTILAGLLYLKKNR RLYIVDRRFKKR >gi|238617815|gb|GG669606.1| GENE 385 432070 - 432774 878 234 aa, chain - ## HITS:1 COG:no KEGG:LCAZH_0296 NR:ns ## KEGG: LCAZH_0296 # Name: not_defined # Def: dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: L.casei_Zhang # Pathway: not_defined # 13 231 6 224 227 281 68.0 2e-74 MDSNASVNKKFVPDISSELRQDIVKSPDVIKNASGIRLFGKRIKSIIYTMDVAVIANSNA DAVLAVYPWTPNTKILSAISTVSNVPILAGIGGGLTKGLRSATIGSFAEENGAQAVVLNA PAKTETILSVEHVVDIPIIYTVVNDSINVKERIDAGVDAFNVAGGKNTAKLVRWLRREVA DINPHFPIIASGGKTSEQIQETIDAGANAITFTAYGVTESTFQKKMEIYRRDHQ >gi|238617815|gb|GG669606.1| GENE 386 432859 - 434103 963 414 aa, chain - ## HITS:1 COG:RSp0310 KEGG:ns NR:ns ## COG: RSp0310 COG0477 # Protein_GI_number: 17548531 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Ralstonia solanacearum # 8 405 45 439 450 144 29.0 3e-34 MDSSITHWRPNIYLFLTSQFLTGITSMIVQYAIIWYLTKETGSATVLSFATILGMLPMVL LSPFVGPLIDRWNKKGLLIVPDIVAALFAIILSISGTFFNAFPLWLIFISLLMRSIAQTF QMPTIQAVIPTMVPEKEITRVNGQLGMVQSANMIIAPALGAMLFAIIPMKFLILLDVLGA AIGIGILLFVKIPSNEKIDDALHVLHSTKLGVSQLVKNKGLWYITLIGAAFTLFYMPCAS MYPLMTMSYFQGTVGQAGLIEAIYSAGMLVGGTIIGIFGNWKNRMIPVIAAFFIIGITTG FSGLLPGNQYGFLWFVVLNALAGLATPYFNTLLMAMIQQSYPPQQLGRVLGVLNSLLSLT GPLGLIFAGPLADAIGVEMLFVIAGISAVAAGIAAWIIPVVRNYDLQLQARLKK >gi|238617815|gb|GG669606.1| GENE 387 434264 - 434848 588 194 aa, chain + ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 1 192 1 193 194 232 63.0 3e-61 MTLPQLDLANAQGPKATIKTNHGDIKIQLFPEQAPKTVENFVTLAEKGYYDGVTFHRVIP DFMIQGGDPTGTGAGGDSSFGGSFEDEFSPELFNINGALSMANAGPNTNGSQFFIVTNEH VDDGMIGQMKQAGYPDEIIDTYKNGGTPWLDFRHTVFGQVIDGMNVVKEISGVKRSASDK PEDDVVMTTVEITK >gi|238617815|gb|GG669606.1| GENE 388 435143 - 436255 893 370 aa, chain + ## HITS:1 COG:BS_hisC KEGG:ns NR:ns ## COG: BS_hisC COG0079 # Protein_GI_number: 16079319 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Bacillus subtilis # 9 368 4 360 360 214 34.0 2e-55 MIKFDETFRKEVNQVAPYIQGETEDEVRRRYHLDKVVKLGSNENPYGPYYHARQAIRRSV EEINRYPEDDFIETKRVIADQFDLKPDNVGLGSGAGNIIETISKMFLNAGDEVLIAQQSY RLYREVSKLMGAKVIEIPLTDDFQYDLAAFKAQITEKTKLIWICNPNNPTSAVTDPSLLE SFIAGLPEHVWVVVDEAYAEFSNPDQLPNLRQFIGRKRVIVLRTFSKFYGLAGIRLGYLL ADQQAIAAYDTVTEPFNSSRAALAAAIASLKYDQGQAKKVLKRIQGDREGLTESLELLGL EVAKSEANFVFANLPEGAPSASKMSQQLMAQGVIIRDGTPWGYPQHIRITIGRHDELEFF LQKLTTILSE >gi|238617815|gb|GG669606.1| GENE 389 436345 - 437103 501 252 aa, chain - ## HITS:1 COG:lin1894 KEGG:ns NR:ns ## COG: lin1894 COG0708 # Protein_GI_number: 16800960 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Listeria innocua # 1 247 1 247 251 354 65.0 7e-98 MKFISWNVNGLRAVVKKDFAETFQKLDADFFCIQETKMQEGQLKLDLPGYRQYFNYAERK GYSGTAIFAKDEPLTVSYGIQAPEFDHEGRAITLEYPNFYLVTSYVPNSGAKLKRLDFRM GWDKAFHAYLNQLDSHKPVILCGDLNVAHHEIDLKNPKSNHHNAGFTDEERQSFTKLLDQ GFMDTFRHFYPDKEDIYSWWSYRFHSRDRNAGWRIDYFVTSKRLADHISDSKILTDIFGS DHCPVELLTDTF >gi|238617815|gb|GG669606.1| GENE 390 437311 - 438030 560 239 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1790 NR:ns ## KEGG: Lbuc_1790 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 239 1 238 238 244 61.0 3e-63 MILVTLIICAVLSFLCFVYIQNKPLSWILTILSVIGMIVSTVYIVKNDKDHFGMKQETKT TYQPLHSVSPSKQMKMLLYQPIGTANKHQVYIYQTSENAKKKSHTTVNDTTNQVIKESGN PRIETQTTRWRYKDGASKLWFGIAGENGKLIKRHNKIYVNKDWLVLSTDQAKVLQKKLKN KTYQAQLKAQGKAFVTKQIMAAMKKNPKMSKVQQAELQKQATAEFQAQAMQKLIRSIQK >gi|238617815|gb|GG669606.1| GENE 391 438030 - 439505 1203 491 aa, chain - ## HITS:1 COG:lin2733 KEGG:ns NR:ns ## COG: lin2733 COG0477 # Protein_GI_number: 16801794 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 3 477 8 482 493 474 55.0 1e-133 MAKSVDNNGKSYNRGLMIVFLLIGTFCTILNQTILSTAFPTIMKAFDVSTSTVQWLTTGF LLVNGIMIPISAWLSTRFNSKPLYITAMVVFFIGTVVCYTAPNFSFLLIGRLIQALGVGV TMPLLQTIMLSIFPPDKRGTAMGLAGIVIGLAPAIGPTLSGWVIDNATWRDLFGMILPLL LIVIIGSFWFIRNVLPTKKTGIDLISVVTSTIGFGSLLYGFSSVGDDGWGSTKVISTLII GLVFIAVFVWRQLTMDKPFLEFRVYRSTPFLVSAILSSITMMAMVGVEMVIPLYLQIVKG MSAFESGLTLLAGALMMGIMSPITGRAVDRYGARNLSIIGMVLLTLGSIPFIFITKDTPT IYIVVFYAIRMFGISMAMMPSTTVGMNALPMNLLSHGTAVNNTQRQVASSVGTAILISIL TNVTNSDKPAHHLLTTNPLQYKDDFFNATLGGYHAAFVVAVVFCLMALVTSFFLKNRASS ADYTTKNGGDK >gi|238617815|gb|GG669606.1| GENE 392 439672 - 440175 482 167 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1788 NR:ns ## KEGG: Lbuc_1788 # Name: not_defined # Def: regulatory protein MerR # Organism: L.buchneri # Pathway: not_defined # 20 165 1 146 146 193 65.0 3e-48 MLINQHWKPLQKFVKRGIEVDKEFQQKLAKILEKNDWHLGIGDVENATGVSQTKLRYWER KGYIKSAQGKGQNRKFTYGTLMKVYQMKMYLDQGYTLAMAAEKAESKSRIMKTLKRAVFD RYEGMETIEGWPAINLGSLVGDPDHVVYAIVKEDNTDLELLPKSKIE >gi|238617815|gb|GG669606.1| GENE 393 440221 - 440697 394 158 aa, chain + ## HITS:1 COG:YPO2003 KEGG:ns NR:ns ## COG: YPO2003 COG0716 # Protein_GI_number: 16122245 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Yersinia pestis # 16 148 85 217 235 85 31.0 5e-17 MTDKTDVLVVYFSMTGNTKRAAEEIALKVKGDIVRLTPKVPYPDDYSKLSEVAKQQLDQH QLPELANDHIDLSPYNVVFIGYPAWWAQPSMLLHTFFKQEHFDGQEVIPFMTSVSSKVEE SLPVVEKLLQGDVELLDGITANSNDQIDSFLKEEGLIR >gi|238617815|gb|GG669606.1| GENE 394 440816 - 441997 937 393 aa, chain + ## HITS:1 COG:CAC0877 KEGG:ns NR:ns ## COG: CAC0877 COG2230 # Protein_GI_number: 15894164 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cyclopropane fatty acid synthase and related methyltransferases # Organism: Clostridium acetobutylicum # 4 390 5 391 391 359 47.0 5e-99 MLEKTVYKELLSHAFDIPVSVTYWNGKTENYGGDNPQVKIEIKKEIPLKEMTSQPTLVLG EAYMNGDIDITGSIEELVASAYRKGGSFLTNNPFLKHLPKISHSEKESKKDVQSHYDIGN DFYRLWLDKTMTYSCAYFEHDDDTLEQAQLNKVRHILHKLNPVSGKRLLDIGSGWGTLIF MAAEEFGLHATGITLSKEQYDYTQQQIKERGLEDKVNVLLTDYREVKDQFDYVTSVGMFE HVGKENLGLYFQDVEKFLVPDGRALIHGITGQHEGAGVDPFLNKYIFPGGYIPNVAENLT HIMNAGLQLTDLEPLRRHYQKTLEIWYDNYVKVIDQAEAKYGKPFTRMWSLYLQGAAASF EAGNIDVMQYLLTKAPSGTGLPMTRQYVYKTED >gi|238617815|gb|GG669606.1| GENE 395 442244 - 443251 792 335 aa, chain + ## HITS:1 COG:SA2346 KEGG:ns NR:ns ## COG: SA2346 COG1052 # Protein_GI_number: 15928138 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 334 1 332 332 216 37.0 7e-56 MKKILAYNILDYEREFVVEWAAEHPDVQVDFNSIELHDDTVHLAEGYDGIDYRQRSQLTD GSDLYKKLHDYGIHQLALRSAGVDSCNLKYAKENGLTVTNVPSYSPRAVAEMTLTHAMNL IRHIPQFQKRIRQNDYVVNGLRSKEISNLTVGIIGVGRIGSTVAKIFKALGAKRVLGNDI KENDDFRGIVDYTTKEDIYKNADLITMHTYMSDQNYHMIGKDQFGKMKNTALFINCSRGP IVDTDALVNALETGQIAGAGIDVIQDETKIFNQSFVGEDKIPLPVYTKLMNMDNVFLTPH VAFYTDHAVKNMVKQSLDDTLMEISGKESPHRINV >gi|238617815|gb|GG669606.1| GENE 396 443344 - 443844 304 166 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509872|ref|ZP_03939921.1| ## NR: gi|227509872|ref|ZP_03939921.1| hypothetical protein HMPREF0496_2035 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_2035 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 166 1 166 166 299 100.0 6e-80 MKKLLLTSLIFGSLIGLANYTFMASASSQPKNVKTSSISKYEGTFRNKFYRVKKEFKVNL KFYDKQNTSVVKRAIVLPKGTVIVSHGEKYYKHYIVNNDFNVHALRHKLQRDISNDNNSQ TSRLSFESRLPASKVTRITESGHHLPNNDWVFSDQPLNGTSGHLKK >gi|238617815|gb|GG669606.1| GENE 397 443956 - 444393 357 145 aa, chain - ## HITS:1 COG:lin0806 KEGG:ns NR:ns ## COG: lin0806 COG0789 # Protein_GI_number: 16799880 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 8 122 1 115 123 91 40.0 5e-19 MQEIEKKVTYSIGQFATIVGLSAPTIRYYEREKLLNPHRDHADRRYFTETDVSWVKFLLH LKGTGMSIQELKLYVKWRAQGDATIPNRLALLKETRNDFMEKYRQVQHHLQILNDKISWY EKKETGASHTEEPFGDYLTRIGHSE >gi|238617815|gb|GG669606.1| GENE 398 444559 - 445302 924 247 aa, chain + ## HITS:1 COG:L179660 KEGG:ns NR:ns ## COG: L179660 COG4221 # Protein_GI_number: 15673520 # Func_class: R General function prediction only # Function: Short-chain alcohol dehydrogenase of unknown specificity # Organism: Lactococcus lactis # 2 246 4 248 250 320 67.0 1e-87 MSVKNKVVVITGASSGIGEASAKLLAKNGAKVVLGARREEQLKAIVADIKGDGNQAVYKV TDVTNPEDVKQLVALAKTQFGGIDVIFNNAGIMPSSPISALHTEEWDAMIDINLKGVLNG VAAVMPDFTSQKHGQIITTSSVAGLKSFPGAGVYGATKFAVRNLMEVIRMESAQEKTNIR TVTLYPGAINTELLNTISDTATRSGMDDLYNAVGIGPDAVARVVNFAVDQPENVNVSEFT IYPTKQG >gi|238617815|gb|GG669606.1| GENE 399 445361 - 445774 362 137 aa, chain + ## HITS:1 COG:L178204 KEGG:ns NR:ns ## COG: L178204 COG1917 # Protein_GI_number: 15673516 # Func_class: S Function unknown # Function: Uncharacterized conserved protein, contains double-stranded beta-helix domain # Organism: Lactococcus lactis # 5 135 4 133 133 175 64.0 3e-44 MAKNESIKNGVIFPAGPKNEAFAKYFVGQSYLQGLVNDPDVNVNVSNVTFEPGCRNNWHI HHDGFQILLVTGGEGWYQEEGKPAQHLVPGDVVVTHDGVKHWHGATKDSWFEHIAITAGT PEWLEPVSDKDYRKLEG >gi|238617815|gb|GG669606.1| GENE 400 445780 - 446100 346 106 aa, chain + ## HITS:1 COG:L178933 KEGG:ns NR:ns ## COG: L178933 COG0599 # Protein_GI_number: 15673518 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Lactococcus lactis # 2 103 1 102 102 142 63.0 1e-34 MVKKQTAGRDHLGDFAPKFAELNDDVLFGQVWAREKELSSRDRSMITCASLMSQGLFPQL EDHMKMAKKNGVTKEEMVELITHLAFYAGWPKAWSAFGLAKKIYTD >gi|238617815|gb|GG669606.1| GENE 401 446205 - 446768 588 187 aa, chain + ## HITS:1 COG:FN1983 KEGG:ns NR:ns ## COG: FN1983 COG0450 # Protein_GI_number: 19705279 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Fusobacterium nucleatum # 1 187 1 188 188 230 57.0 1e-60 MNFIGKEIEDFKVNAYQDGDVKQVTKSDLLGHWSIVFFYPADFSFVCPTELGDLADNYDE FKNAGAEIYSVSEDTEFVHQAWHEKSEEVGKVKYPMIADPAGKLARFFEVLDEDAGQAYR GVFIIDPKGKVRSYTINDMGIGRNAKEVLRTLEAAQFVAEHGDRVCPANWKPGQKTLKPG TQLVGKI >gi|238617815|gb|GG669606.1| GENE 402 446903 - 447433 300 176 aa, chain + ## HITS:1 COG:no KEGG:lse_0555 NR:ns ## KEGG: lse_0555 # Name: not_defined # Def: hypothetical protein # Organism: L.seeligeri # Pathway: not_defined # 5 173 7 174 177 107 40.0 3e-22 MKQHKRIDIVGHVKLQVLLNLMAIPLFFGFWFLMVLLTGINAFSMDLWQLWSIFILLIVF MVVHELIHGLFFKLFHPRDHVKYGYTKGMLYATNPGKLYKRWQFMIIGIMPLILITLALW GLFWIGVIHASVFILVAAFHAAGCVGDLYFEIILMFSPIGAMVEDTATGMTIYVKQ >gi|238617815|gb|GG669606.1| GENE 403 447506 - 448186 469 226 aa, chain + ## HITS:1 COG:lin0630 KEGG:ns NR:ns ## COG: lin0630 COG0730 # Protein_GI_number: 16799705 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Listeria innocua # 1 223 20 245 246 59 27.0 4e-09 MGGGGGSFYLGILIGIAHLSPSSAAATSLFTALPALVVGTYSHYRTGNMKFSYGNKLLIT ALPATVIGSLVSGVIPVTLYTWAIAIILFVLGVQTLRKSFKGKPSSNLKPWTVYLFGALS GLMVGIAGLSGGGPVMAGLLLLGLNMPQAAATSSYALIALSIVGLIFHSTQGNIAWQVGL LLMVGSLAGAAIMPRILAHFDPRKVTKILQPVMGILLVLMAIKFVI >gi|238617815|gb|GG669606.1| GENE 404 448196 - 448966 645 256 aa, chain - ## HITS:1 COG:lin1028 KEGG:ns NR:ns ## COG: lin1028 COG0561 # Protein_GI_number: 16800097 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 2 256 1 256 256 106 28.0 4e-23 MIETITVFDLDGTLCDDGPLSVSSETVTAIQTLKKKNILPVIATGRSHYEITTLLDQLDL HTYILANGCYIIYNDRLIQNYHFPIDKIESVIRMANHYHDDVGFFNQQGFAITGMNELTR NHVNKNHLDQVPIYPEFFRHEPVNFLNLYIKDDKEALYQSAFKNQLSILRYAPDAVDVMP LEISKAKGISKIQQLIGNPNLKIYAFGDQNNDLSMFSLADYGISMKQSSDQLKQRATYIA DSDHGVLEGLYHYHLI >gi|238617815|gb|GG669606.1| GENE 405 449103 - 449744 490 213 aa, chain - ## HITS:1 COG:ECs1906 KEGG:ns NR:ns ## COG: ECs1906 COG0702 # Protein_GI_number: 15831160 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1 212 9 219 220 144 41.0 1e-34 MKTVLILGAAGQISTYLIADLLKQTDYKLKLFARNASKRIKVTDPDRETLIDGDFNDKHA LNDALDGVDAVYLNEMRDLEAVENIVKQMDANGVKKIIVATVLGVEDEVRGNFGQWNNAM IESSITRRKKTAAVLRKSDLDYTQLRLAWLFNDDNNTDYEVTQSGEPFGGTEVSRQAVAK FIVEILKDDSDKYTRKSLGVNEPNTHFDKPSFY >gi|238617815|gb|GG669606.1| GENE 406 449980 - 450294 171 104 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509882|ref|ZP_03939931.1| ## NR: gi|227509882|ref|ZP_03939931.1| hypothetical protein HMPREF0496_2045 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_2045 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 104 1 104 104 169 100.0 5e-41 MEDQKVINYSLHTLYKTSLAIVGVTLFSFSLGMAQPSTNANADAVVQTSNQATKSSSPLT KGNIIINSGLSDSNGVILGNGDKVSLDLGINVQGGGKRAHSFRG >gi|238617815|gb|GG669606.1| GENE 407 450251 - 452362 1554 703 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2321 NR:ns ## KEGG: Lbuc_2321 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 4 703 80 875 875 296 32.0 2e-78 MFRGAGSERIHSGDKFTVKFSSNSVDIDSLTPSWEVNSSGQSFDDLFSITRDANNNSITI TAKQNANFDKIQQLKFNLAGHAQTTAEQKADASVTADFTLNGQSNPLATQTYKFNVKDSS GGSTIAPTPTTTTVAIWGDATGAALHGQHGLDPVESAKFSDNWLDNDPSNNAIDYVHNQD SMLAYAQLALPVTNRPTNIVWHIWPENGQDLDPNNALVFIAPNDGVHFPNVIKNPGLKSD PKHLGGLVFTSSQLPPVRPSSEGQPTINIAFYVDAKMKDGPQTIKTSVENKQGHLLSSNS KTLVYQQSYPTGYTPFFREQDRTIDLATTEGKNFPKAADISSDQIRDNFVQKKGNSGYYQ GDYNDPTGQNYRYAITDGSYDPTKVGSYKFQITVTGENGNQLQRWVTLTVKNSGGTSGGG TTPTTPTTPTTPVTPSTPSGSSSSSSSSSSSVTSSSSGAPSEDYQQPKFPDYVAKKGMAV YSLKKIGLYSKKNFSTKARKAWYSRKPRIYRPMFVVTGYARSATGHLRYKVRDVNHLTKN RNKKGYITANWQYVRPVYYAKKHSTVTVINPRGVNAYGKVNLTNKVKNYKQGTILKVVKA VHYHLTTRYVLPNGKYITANRKLVNMGRHRFPRYVRARGAINRYSDVNFTKQNRHFTKQN HKLFRVYGFDYSHANSISNVGALRYRVANGYISGNTRLVRIVK >gi|238617815|gb|GG669606.1| GENE 408 452451 - 453635 868 394 aa, chain - ## HITS:1 COG:lin2952 KEGG:ns NR:ns ## COG: lin2952 COG1473 # Protein_GI_number: 16802011 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Listeria innocua # 3 392 6 395 400 437 54.0 1e-122 MDLEQELMQRLTQSEDDIIQIRRHLHEHPEVSFKEKETHAYIKNFYHDLDCTVRNCGTGY GILVDIDSGKPGPKLALRADFDALAIQEDNDLPFKSQNPGVMHACGHDGHTAYMMVLAKN LIALKNQLKGSIRIIHQPAEEVYPGGAKSMIEDGALKDVDNVIGIHVMSTMPTGAIGYHL GDSQTGRSNFTVTFTGKGGHASMPQLSNDAIVAGSYFVTALQTIVSRRIEPADHASITVG SFDGVGTNNVIKESVTLKGDVRIMRESTRTVIHKQLKQIIQGIESTFGVKADYQIITDVP VLYNDPKFTVQTVEDIKTANIPEVTQVTDFGAQDPSEDFSYFALKRPSTFLYVGCDANDG QTHPHHSPNFLMDERCLLIAAKAAGTATLRYLFK >gi|238617815|gb|GG669606.1| GENE 409 453657 - 454118 406 153 aa, chain - ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 139 7 143 152 88 33.0 5e-18 MHVLVEFIVSLASTVGFGLITNIPRRSLLPAGITGSMAWTVYYLVLQVNHGLILPNFFAA IVIGILGNISAVLFKVPVNIIYVPSLVSLVPGGILYLGMRSFTLGQESHTSEYLFNTLTI AIALAVGFVVAEVIFYRIKPLLMKLVQAQKTSD >gi|238617815|gb|GG669606.1| GENE 410 454122 - 454898 591 258 aa, chain - ## HITS:1 COG:BH0081 KEGG:ns NR:ns ## COG: BH0081 COG2966 # Protein_GI_number: 15612644 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 5 248 2 249 251 112 28.0 9e-25 MEKSITEDDVISLCGKVGKILLTSGAETSRVESTVEYIGKAAHYDIACHATITALFVGTN NQSRTHLVKVRLGDWNLQKVDEINTVSRKFVRGQLDFHTLKESVEKIDRKVIDFNWPLKI IGAGFVSVAPMLLFKATWTDLSYAFFVGIIGYLGAVLAGYRIKTPYVAAGCGGFIVGFLA AALQFSGLGSSAGNIIVSALMPLVPGVAITNSFREIIDRNTISGVVRAVDAVIIAGSIGA GVVIGTSLCKLIFAWIGG >gi|238617815|gb|GG669606.1| GENE 411 455802 - 456677 779 291 aa, chain + ## HITS:1 COG:SP1576 KEGG:ns NR:ns ## COG: SP1576 COG1897 # Protein_GI_number: 15901418 # Func_class: E Amino acid transport and metabolism # Function: Homoserine trans-succinylase # Organism: Streptococcus pneumoniae TIGR4 # 6 278 17 288 314 199 39.0 6e-51 MTANATNGFLHAENQWTNQKLTHPVSILILNLMPTRRDAEFQFLSGFNHLDSDVDITFMY PYTHHFKGTSREKIEADYVCWNQIADRYYDGLIITGSPVEKLPFKQVDYWDELQKIIKWG KTHVKQQLHECWAAQAGLYLDYGIQKRLLPNKLFGIFTAVSVDHDSPLARGFGAGGLLRM PQSRHTEIILDETNLPGDLKVIATAPQSGPMILSSNTYHTTYVTGHPEYQEKTLANEYYR DRYKNLPINPPVNYFSDPVSGTVNYSWKDASKKLYKNWTHLLVDKKVGISL >gi|238617815|gb|GG669606.1| GENE 412 456674 - 457987 1295 437 aa, chain + ## HITS:1 COG:CAC2783 KEGG:ns NR:ns ## COG: CAC2783 COG2873 # Protein_GI_number: 15896038 # Func_class: E Amino acid transport and metabolism # Function: O-acetylhomoserine sulfhydrylase # Organism: Clostridium acetobutylicum # 1 426 1 426 427 555 67.0 1e-158 MTEENNELHFETLQVHAGQTVDETGSRAVPIYQTTSYVFDNPEQAAGRFGLTDPGNIYTR LTNPTTDVVDKRVAALENGTAGVTLATGSAAITAAILNVAGKGDEIVSASTLYGGTFNLF NVTLPKLGIKTHFVDPDDPANFEAPINEHTKALYIESIGNPGINLIDFEAVAAIAHKHGI ILIVDNTFGTPYLVRPLDHGADVVVHSATKFIGGHGTTMGGVIVENGQFDWKASGRYPGF TEPNAQYNGLVFADLGGGAFTTKVRAESLRDLGATISPFNSFLLLQGLESLSLRVERHVE NTKKIVNFLHNHPKVAWINYPGLEDSKYHDLAEKYFPKGVGSIFTLGLKGGEKAGKQLIE NLKLFSLLANVADAKSLIIHPASTTHAQLNEEELKEAGITPDLIRVSVGVENADDLIADL TQALDKIPVEEDQKVAE >gi|238617815|gb|GG669606.1| GENE 413 459463 - 460671 989 402 aa, chain + ## HITS:1 COG:lin1632 KEGG:ns NR:ns ## COG: lin1632 COG1364 # Protein_GI_number: 16800700 # Func_class: E Amino acid transport and metabolism # Function: N-acetylglutamate synthase (N-acetylornithine aminotransferase) # Organism: Listeria innocua # 17 402 11 398 398 366 52.0 1e-101 MQITSESSIEVSTFEWPAGFYTDAGHAGLKKDADDLGWLVSKVPADAAGVYTTNQFQAAP TALTKQTINLAHKLQAIVMNSGNANSCTGVQGTHDAAAMQKAAADKLKIDSNLVGVASTG VIGEQLPLDKIKKGIDGLGLTKSDDVTKAVLTTDTHAKTITVTCLIDNKKVTLTGFCKGS GMIHPNMATMLGFVTTDAAIEGNQLQGLLSETVNQTFNQITVDGDTSTNDMVVVMANGQA GNDSLTSSHEDYPTFVKAFKLVLSHLAKEIAGDGEGASKLVEVNVAGAYNALEGQQVAKA IVGSNLVKAMIFGGDANWGRVMQAIGQTTAHVDLNGVSVSINGIQMVKNSLAADYSENEV AKTLTEKVVTIDVDLNAGTDTGTAWGCDLTYKYVQINASYRS >gi|238617815|gb|GG669606.1| GENE 414 460684 - 461433 763 249 aa, chain + ## HITS:1 COG:lin1631 KEGG:ns NR:ns ## COG: lin1631 COG0548 # Protein_GI_number: 16800699 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate kinase # Organism: Listeria innocua # 1 242 1 243 250 159 39.0 5e-39 MGQTIVIKIGGHAAENLSPEFFKQLHHWHDEGKQILIVHGGGPQISSWSKKLGLTVKKID GIRVTDPDVLKVTQAVLLGLVQPTLCQKVTAAGLPALGLNATGHPIIFGNYLNQKLFGEV GQLTDINQDYIATALKDHIGITAPLAVGQAGQLLNVNGDVAAAGIARMLGAEAFILLTDV PGVMVENHVLSSLSRQKANKMFKSKLITAGMQPKIQAAFDALQNGVKKVTITNKLQSAGT TLLKNQLVG >gi|238617815|gb|GG669606.1| GENE 415 461454 - 462623 1039 389 aa, chain + ## HITS:1 COG:lin1630 KEGG:ns NR:ns ## COG: lin1630 COG4992 # Protein_GI_number: 16800698 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Listeria innocua # 1 378 1 379 384 382 50.0 1e-106 MKHIFPTYQQFPMELVSGHDWHLVDNDGKDYLDFTSGIGVCSFGYSNELIQQNVVEQLGK VWHTSNLYPSQLQDDVAEMVAPEGMLAFFCNSGTEANEAAFKLARKYTGKAKVLAFKNGF HGRTYGSMSLTGNPDIQAGFAPLVPGIDFASYNDFSSIDQMTSDYAAVILEIVQGEGGVV PGDSHWLKAVSQKCHELGILMIVDEVQTGIGRTGTKFAYEQFDVDPDIVTCAKALGNGLP IGAMLGKKKLASAFGPGSHGTTFGGNKIALSSAKGVLQQLTPDFLKIVQVKSQVVFDALE KALKPLSIVKDISGLGLMIGIHLTGNVKVGDVIADLQQQGILTLSAEHNTLRLLPPLVMS EHDLLAGVNLIQNELQKQADLAKSPIDQL >gi|238617815|gb|GG669606.1| GENE 416 462699 - 463028 461 109 aa, chain - ## HITS:1 COG:Ta0182 KEGG:ns NR:ns ## COG: Ta0182 COG0393 # Protein_GI_number: 16081336 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermoplasma acidophilum # 1 105 15 118 133 92 49.0 2e-19 MSDKKFIISTTEHIPGKEYEVIGEVFGLTTQSKNVVRNIGASLKNIVGGEIKDYTKMLDE AREVSVQRLQANAEKMGADAVVMMRFDSGSIGADMQSVAAYGTAVKYTN >gi|238617815|gb|GG669606.1| GENE 417 463177 - 464562 1277 461 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1767 NR:ns ## KEGG: Lbuc_1767 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 11 461 13 494 494 495 54.0 1e-138 MKTRLKPVALLLFSFISMLCLTQVVSADVLDAPDPANNIPQVNAGNVLKDYTQKNLNVID NTTPKGNMDRKYIERTIDENDPGTVESYSTTPDSTQQTTLQTKLYLPDGFNVTNYQHGNF QSVTLDDSGNMYFIESNGSDTNLGVIVKYNLADLNKLGAGSDPMIVWNAFNYFNPYTDEG VQHNQQYEDAYEQLKAPNADLKKIKSEVQNLQSTTSKKDATKANRQKLSALENQLETDQK QIKRIKQQNPDLFKYAAVAQAAQLSPQVDIGHGQTLSFNPQNKHLYIVEDNTLTDLKTRN QNNTVLEMTTDSLKPLRQYNFKMYHGDSGNLQLHTLTFDKQGNAYWGRKNGLGYMFFYGR LDQHDVQFQAAPTYFKNRGGSPNQGVSYNPANDRLYYVTDDILTSIPTQSVRDGSFTAND IHYTAFTSKRECESLTFDQQGYGYQLMLWPAEILKSSTPLD >gi|238617815|gb|GG669606.1| GENE 418 464584 - 466266 1278 560 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1766 NR:ns ## KEGG: Lbuc_1766 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 15 555 4 537 701 484 52.0 1e-135 MYRNRLEVYILNKFKWKSPIVLGLAAFSLFSTGALLIASQASAAHVPEQITNNQKLTTDA QNRNVTFTGTTALYTKPSVKKGAQEVISKVALKELAKSDSSADNFVAYRQATTKNGQVYY KIVSFDGQYRGWIYGGKHVGKFAGGLEKFTAFKEIPLPSNLAKYTFNIAAPGMNNDGKSV TYTEPMNTVYGAGRTVGDAVAYKNAAFKIDKMGTRTREGDTWVHVTSVDQTAAKLNGWIL YKGLSQAEDPLSGTAVRIDLVNSSGQLIKYIDYQKPNAQSGKTLGLSYSDDGTEVWLLGA SDQQKLQDNIRDALKGTGYSLETLSANQTGYLAEATVGGKTSLTAAQADSIPNDAVQINI INQTDGVIGSFNYTKPGASAGQSLAATDNGTTGLSSDDQNAIQADIKTALKSTGYSLNAL SSSQLEQLANAQFGNSVYLKTTTKTTDISDNAVRINFVDPSTKKIVTSIDYTNTDADDPA PKGSDLGVQSGNNWTLKSEDNTAITNEAITTLDGTGYSLTDNKLSDADLATIGAAKFGSS VSINVSTDNAQATTNQSSTH >gi|238617815|gb|GG669606.1| GENE 419 466554 - 466646 61 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKVKTIMIVQQRLNENDQASNDQLGGTAN >gi|238617815|gb|GG669606.1| GENE 420 466676 - 467152 311 158 aa, chain + ## HITS:1 COG:lin2222 KEGG:ns NR:ns ## COG: lin2222 COG0454 # Protein_GI_number: 16801287 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 16 147 14 147 153 104 41.0 5e-23 MKVYLETVNRDRQNYLSFLKLADPDETMVKSYLDSGELFKIVVGDKVVGVLHLVEIDDET LEIKNIAILPEYRGRHIGSTALQSLIELCRGNHYKRIYVGTANSSIENFKFYQKNGFRFD HIVPDFFSNYDQSIYENGIQALDMLYLVYRFDDKKKED >gi|238617815|gb|GG669606.1| GENE 421 467154 - 468029 316 291 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 11 281 14 279 285 126 33 2e-27 MKFTWQKQSNEPKTLKKFLNTHGISHRMYKNIKTSGQVLINSRSSDSQTKLADGDQVTVI LPDEAGDPNVAVSEQPIKVVYEDDNWLVVDKPAGLTVVPGPANRDDTLVNRVKGYLVRAG VTDLVPHIITRLDRFTSGLVLIAKHRLANSLANELLAAKQLHKRYLAVVSGGGLPDHGRI QKPIAKDPNGYGQIISDDGRFSDTEYWVRQRLNDDMLVEVALHTGRTHQIRVHFASIGHP LLGDQLYHGPMNMGIDRQALHAVMLGFNDPFSQSEIKLKSPLPKDMSSILD >gi|238617815|gb|GG669606.1| GENE 422 468190 - 468363 290 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509898|ref|ZP_03939947.1| ## NR: gi|227509898|ref|ZP_03939947.1| hypothetical protein HMPREF0496_2061 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0497_1954 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0519_0668 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0497_1954 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0519_0668 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0496_2061 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 57 1 57 57 67 100.0 3e-10 MSTEETDLTVKKIIAELENNVSVLAWLKDNKNDEEAQKHIKAIKDALSKAKTDLIKA >gi|238617815|gb|GG669606.1| GENE 423 468606 - 469388 630 260 aa, chain + ## HITS:1 COG:L90946 KEGG:ns NR:ns ## COG: L90946 COG4420 # Protein_GI_number: 15672474 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 8 259 12 265 290 190 39.0 2e-48 MAEEQTAICFIDHQKHMVIDGRYLRDLEPATRNLIKSEYPSAKVTDFICDHDLLKYQLMR VDGMVKSDVKQTRKINRRLTRAMQSDDYEIVDVNENLERTLTMGQRVSDAVARFGGSWGF IGIFTFVLIAWMFVNGASLFGIHFDPFPFILLNLGLSCIAAIQAPIIMMSQNRAADRDRM NSENDYHVNLKSEHELRILHAKLDNLTQNQLPHTLEIQKLEIEILGQIRNELDELHREKA GQFSNDQQDGEKDEKETSDQ >gi|238617815|gb|GG669606.1| GENE 424 469525 - 470115 355 196 aa, chain + ## HITS:1 COG:lin0816 KEGG:ns NR:ns ## COG: lin0816 COG0454 # Protein_GI_number: 16799890 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 4 186 2 185 185 139 40.0 3e-33 MITVREAQQDDAGQIAPLIDIIFDEMQLDELEDVPEPGLAKVITRAYQTKTYLSDKASTV VAEADGQVVGVVFGYPSENEDDINKVLINLSKQSADFKQPYIPDSETNTDEWYLDSIAVN PNYQGHGIGSKLLAAVPRMALNDGKSVVGLNVDLENPDAEKLYARKGFKTVGSQMIGDHL YHHMQKPAKDPSLLYV >gi|238617815|gb|GG669606.1| GENE 425 470274 - 470510 176 78 aa, chain + ## HITS:1 COG:SP0333 KEGG:ns NR:ns ## COG: SP0333 COG1476 # Protein_GI_number: 15900264 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 12 72 1 61 64 83 62.0 9e-17 MVISQSKGGGALNRVREYRKKQKLSQFSLAEKVGVARQTINLIENDKYNPSLNLCISIAK VLGTDLNTLFWEVEDNES >gi|238617815|gb|GG669606.1| GENE 426 470500 - 471033 434 177 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1756 NR:ns ## KEGG: Lbuc_1756 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 177 1 177 177 129 34.0 4e-29 MKVKETFGTKILKHFYGIPGVLDEHARQEVSRIGSNAYLMLVSYLLISTLIILLISIRHL ENAFWILVFSNLIVPIYGINGYVLVATNRLHLADKEVRAQNYADAVKKSVKRGIGMAVYF GTTMFLFTSITNWFIDGTRPIRTLTSIHEIVKWILAGALFGLLMFIYDLFRIKKFRE >gi|238617815|gb|GG669606.1| GENE 427 471046 - 471213 71 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227512837|ref|ZP_03942886.1| ## NR: gi|227512837|ref|ZP_03942886.1| hypothetical protein HMPREF0497_1959 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0497_1959 [Lactobacillus buchneri ATCC 11577] # 1 55 1 55 55 86 96.0 6e-16 MTALLMIIGILFFCLLGFNDYRRSQLTGKTIFFLTFGTVIWVAGNIISQYFHGIN >gi|238617815|gb|GG669606.1| GENE 428 471185 - 471295 57 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSTYVKEGNNKPKQIDYLLGFNEKFNKINLSRENTD >gi|238617815|gb|GG669606.1| GENE 429 471387 - 473663 1540 758 aa, chain + ## HITS:1 COG:CAC1464 KEGG:ns NR:ns ## COG: CAC1464 COG0178 # Protein_GI_number: 15894743 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Clostridium acetobutylicum # 12 756 10 755 755 787 51.0 0 MSEKELFANGEITVHGARQNNLKGVDIRIPKKRTTVFVGLSGAGKSSLVFDTIAAQSRRE LNETFPSFTQQYLPKYGQPNVQSIDHLPVAIVIEQKKIGQNARSTVATYTGIYSLLRLLF SRIGQPFIGYSDTFSFNMPQGMCPTCQGLGYVDDIDESALVDKNKSLNEGAITFVSFGVD TWRWRRYADSGLFDNDKPLKDYSTKEWELLMHAPQQQLHGAPAAWHKTALYEGIVPRIRR SILHKAEAKHHRTEIAKVVTHKACPDCHGTRLNELVRSNHIDGQNIADVCSMTLSEVVTF LENIKVPLAVSIIRELTTMLNSLINIGLGYLSLNRGTNSLSGGEAQRIKIAKYLNSSLSD LVYILDEPSVELHPHDIRLVKQALRQLQSRGNTILIVEHNPLMMTDADYAVEIGPVAGNG GGQVTFTGSFQELLSSDTLTGRYLRRPYQLKTPRKVSGEWLKRTHIRTHNLKDVSVNIPV GVMTVLTGVAGSGKSSLAQALMDGIKTPVINLNQHAASVNLRSTPLTYLGIFDKIRQRFA KANHVSSSLFSYNGKGACPTCKGKGVTITNMAFMDPVVQVCEACHGRRYSPEALSYQYQG HTIADVLEMSVDKASQNFVDDEVIGPRIHDLQRVGLGYLKLNQSLTTLSGGELQRLSLAT QLNGQGNMIFLDEPTAGLHMQDIDKLLGLFNELIDQGNTLILIEHNLTVMTQADWLIDVG PDAGSFGGQILYEGVPSGILNVTKSYTAASLARVLKPH >gi|238617815|gb|GG669606.1| GENE 430 473787 - 473924 94 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKNTATAIMSVVAIAANATIAIVTASLLSTQKNDDSKHHHKHHK >gi|238617815|gb|GG669606.1| GENE 431 473938 - 474336 383 132 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1755 NR:ns ## KEGG: Lbuc_1755 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 131 1 131 131 207 78.0 1e-52 MEDNIKLGNPVFDNMLFVLDRPVTEENHKDYRFENEELLQISEGIWAMPAYMKNDDDFSL FFIITEIDNGQTVLAFSTGEKNGSDFSLSNPILTGKGLNLLTAYDKDRAASILHFINQIS KAAEGNWRMVEN >gi|238617815|gb|GG669606.1| GENE 432 474412 - 474633 214 73 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1754 NR:ns ## KEGG: Lbuc_1754 # Name: not_defined # Def: transcriptional regulator # Organism: L.buchneri # Pathway: not_defined # 1 73 1 73 73 95 58.0 5e-19 MELSLAESAKQFNVTPEVIADYITEGLVPSKTSLADGSTLNDRDMYWVDMVHCFIQNGSS IQEVKKLIERCDI >gi|238617815|gb|GG669606.1| GENE 433 475003 - 475914 627 303 aa, chain + ## HITS:1 COG:PH0896 KEGG:ns NR:ns ## COG: PH0896 COG1230 # Protein_GI_number: 14590752 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Pyrococcus horikoshii # 22 295 17 289 295 252 46.0 8e-67 MEGNGHNHDVLSGSRFFFVTVLNVLITIAEFVGGALSGSLSLISDAFHNLGDSFSIAFSY AAHRISKKRQNERNTFGYKRAEIIAAFLNSIALCLICVFLVIEAVKRLSHPQSINGNLML IVAIIGLIANFVSAFLLNAGAKHNLNMRATYLHILSDALSSVAIIIGGVLIDIFGWVMID PIVTILVAVYIFYESIPIIRQTCRILMQGAPDIDYQAIKNDLLKINGVFGVHHVHAWSID EHNIIFSAHVNMHDMKISEAQQIYTEIDDLMEKKYHMCHVTIQAETTRGENEDMIYDRGN DIP >gi|238617815|gb|GG669606.1| GENE 434 475958 - 476605 623 215 aa, chain + ## HITS:1 COG:SP1638 KEGG:ns NR:ns ## COG: SP1638 COG1321 # Protein_GI_number: 15901474 # Func_class: K Transcription # Function: Mn-dependent transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 1 215 1 213 216 129 36.0 3e-30 MTPMKEDYLKIIFELGGANKLVSNKQIAISLDIAAGSVTEMVNKMVDEKLVTHKPYSGVQ LTKTGTRYAEELVRKHRIWETFLINVLHFDLPDVHREAEQLEHVTSDKMINHLDDFLGHP KRCPHGGIIPDKDGHYEKDHDKLLMDAKDGEEVVVNRFIDNHDLLTLLGDIKLDLGDRLK IISHDPFEGSVVAQNLTDKKQLTIGYKTAHYVFVK >gi|238617815|gb|GG669606.1| GENE 435 476719 - 477498 791 259 aa, chain + ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 18 258 9 248 250 207 45.0 2e-53 MDEEQRKYEQKRQHDQLVLDTCILAGTIMIESGSEMTRVNNTILRIARNAGLAKARVYVT VTGIIMSGGVSDVGAQVGSIDKRSFDLEKVAKVNELSRLFEAKQIDISDFYDQLIHIDDV VGTFPLWVQEIGAGIVSGALTVVFRNNIADFWITCLVGMAGWAVLYFLNIYVQIRFLSEF LAAAVVAALAIMSVQLGFGHQADDIIVGAMMPLVPGIPLTNAVRDALSGNLISGPARGIE ALISACALGFGVAIALHFM >gi|238617815|gb|GG669606.1| GENE 436 477512 - 477994 305 160 aa, chain + ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 139 1 139 152 108 35.0 5e-24 MNPIEFFIIKCICVYLSGIGFGLIVNLPHKALNIAGFNALLGWLVYYVIINTWGGLGSSN FFGGLCIGVTSVIIARWKKMPSILFDVPGLVPLVPGGQAYNTIKSFAMGNYQAAFSYLSE VIWIAGSIALGFIVAELVNKIRIKVERDLRKLKRSRKSKI >gi|238617815|gb|GG669606.1| GENE 437 478188 - 478508 276 106 aa, chain + ## HITS:1 COG:SPy2172 KEGG:ns NR:ns ## COG: SPy2172 COG1695 # Protein_GI_number: 15675909 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 106 1 106 108 82 33.0 1e-16 MAIQLSSELLDGCVLGLLMHDDYYGYALTQKVQESVSVSESTMYPVLRRLKKNQLLTTYD EPYQGRNRRYYQITAEGKRQFSVIQSEWRDFKTGIDKMLGDEAGHE >gi|238617815|gb|GG669606.1| GENE 438 478501 - 479133 678 210 aa, chain + ## HITS:1 COG:SP0099 KEGG:ns NR:ns ## COG: SP0099 COG4709 # Protein_GI_number: 15900042 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 3 165 5 160 197 60 26.0 3e-09 MNDYIEELKAMLTQLGAQEQSDVLDFYTEYLQDGQFVTYTDCVRELGTPRQLARKVLADY SIKNLNTASQSGSRANKPKDDVKTIWLIVLAVLSTPITIPLAFGAVGLFIAAIAVAVGIL AAIFGVGFGVIFGGLVSLVTGLGVVSNNFWVGIFYLGVGLIAAGAIIMLIPAFRGLVDGV IHGITVFSKWMYSKIVKKNRAEKHGRGQQK >gi|238617815|gb|GG669606.1| GENE 439 479130 - 480071 697 313 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1746 NR:ns ## KEGG: Lbuc_1746 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 312 1 293 296 134 30.0 5e-30 MKKPVIIGLVTMIVGLILAVVALGHSGLQTVYWDSGFKVESQKNNSKTYQKTFGTNVKQI EFTADNTIEIRSGDVSKTQVSYTTGTKVQKNGDILTVDSPNRHHIWRVGINIDSEDDDQG RTIITLPRKAKLTRISGRNNDELFVRDLSLKDFQLSGQADLDMQDVKVASDLNLKGSGGD STLTRVSAPSVSQDTLGGDIDYQNCRFVDNHSYLSSAGGDISISNNQFKDVSINVQGGDF SFRNNRILKRLSAKSAGGDIDGQVLNRQQSRVAVSAEGGDVELFGQSNHSWNMDKKKAVS YHLSSEGGDVTIE >gi|238617815|gb|GG669606.1| GENE 440 480245 - 480934 398 229 aa, chain + ## HITS:1 COG:SP0489 KEGG:ns NR:ns ## COG: SP0489 COG0671 # Protein_GI_number: 15900403 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Streptococcus pneumoniae TIGR4 # 23 217 14 208 216 77 31.0 2e-14 MFGNEGYMMIDRDVNRAFKLLVSIIITLLLSISVAFNFDYLQFLDSIFTTAIQGKAPSEL LEKIYLLISFLASPKMDILWVFVIAFFLWGFKYKVPALWAIFTLGGGDIIGFVVKHLVKR HRPPLHLGVDNGYSYPSGHVLGFFLIMAVLWISVIPLIKYASIRCILRILMGIALILVMF SRVYLNAHYPTDTLGAALVAYSWLLISEMFYVKFAPQVARFRFVVNTKV >gi|238617815|gb|GG669606.1| GENE 441 481012 - 481515 389 167 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1742 NR:ns ## KEGG: Lbuc_1742 # Name: not_defined # Def: GCN5-like N-acetyltransferase # Organism: L.buchneri # Pathway: not_defined # 1 166 3 168 169 156 46.0 3e-37 MTIYTQRLVIRHLGLDDYPQYADLTSQPEVESGAGFNLINNPQMIQSALKRQLRAPGSYG IFKGSQLIGAILLFKRIGKGGRPDDHHLEMSYFLTPTCWRQGYMSEAITGLIANLRGHPL VESIVAEVFVDNKRSTALLKRLKFAFVTEMRDPIVGRQKVIYELKLT >gi|238617815|gb|GG669606.1| GENE 442 481872 - 483353 1286 493 aa, chain + ## HITS:1 COG:lin0791 KEGG:ns NR:ns ## COG: lin0791 COG0833 # Protein_GI_number: 16799865 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 9 474 6 479 486 579 63.0 1e-165 MDENGNDGNGQVKRGLKARHVSMIALGGCIGTGLFVASGSAISQAGPLGALTAYFFMGMM VYFLMTSLGEMATNMPISGSFAAYSAKYVDPALGFAMGWNYWFNWAITVAVDISTAALVM AFWLPNIPQWIWSAIALVIILSINAMSVRAFGETEFWMSLIKVVTIIIFLGVGCLTIFGI MGGHFIGLRNFSIKQAPFVGGFPAILSVFVVAGFSFQGTELVGITAGESQDPQHSVPKAI NEVFWRIILFYILTIFVIAAIIPYTSHSLLGSSTTDIAISPFTLVFQRAGLAAAASIMNA VILTSVISSANSGMYASTRMLYSLSNSGYAPKRFGKTAANGIPYYALIATTVVSLLTFIS SIAGPKIYMWLVAASGLTGFIAWFGIAISHYRFRRAFVKQGHDLKELKYHAKLFPFGPIL CLILCILVIVGQNPSAFMHFDWTQILVTYISVPLVLVLYFGYKLKKHTKIIPLEKVDISP SHEEEDLSKLNDN >gi|238617815|gb|GG669606.1| GENE 443 483487 - 484533 1017 348 aa, chain + ## HITS:1 COG:lin0543 KEGG:ns NR:ns ## COG: lin0543 COG3684 # Protein_GI_number: 16799618 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Listeria innocua # 6 343 4 336 338 297 45.0 2e-80 MAKKLLSKGKYQRMLKLTNDEGKIDALALDQRGSLVKMMKTASEKYGKLFSMKMVYDFKE VVSRILSPLSSAVLLDEQMGFKGIEAKDPDTGLIMSYEKTGYDANEPGRLPSLIPDQSAQ IMVSKGADALKVLLYFNPDDPDEINDQKKAFAERYGTEGLAAETPTFFEIVTYDDRYNSK SLEFAKEKPDFVLRAMKEFTQDKYHIDVLKMEVPFNPTYIEGWEASAGESAYTENQAKGY LKQLSDEATRPFIFLSAGVPTDIFQRELKLAGSAGAQFNGVLSGRATWIEGVDLFVRDGE DGLVDWLKRKGTRNVTDLTKILSENATPWFEAYGGKDNIQVIDISDLK >gi|238617815|gb|GG669606.1| GENE 444 484615 - 485253 596 212 aa, chain + ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 210 3 212 217 251 60.0 8e-67 MLVLAGTIGAGKTSLTHMLSKHLGTPAYYESVDHNQILPLFYKDPKKYAFLLQIDFLNRR MADIKKAWKNEESVLDRSIFEDSLLFHLNADLGRATETEVNIYDSLLQNMMQELPHTSHS KNPDLLIHINISFETMLARIKKRGRPFEQIDNDPSLYQYYKDLNQRYQQWYENYDKSAKI QINGDRFDFVEKDTDRHAVFDLIDQKINQLAI >gi|238617815|gb|GG669606.1| GENE 445 485588 - 486871 1005 427 aa, chain + ## HITS:1 COG:L150515 KEGG:ns NR:ns ## COG: L150515 COG0172 # Protein_GI_number: 15673694 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Lactococcus lactis # 1 419 1 418 423 532 63.0 1e-151 MLDIKKIRKDPDYTKEKLATRGVKAETIDELLGFDAKRRDLIVKSESLKATRNDVSDKIS QLKRNKEDASEAIAEMKKTGQTIKDLDEQLHQIEIDENDLAAHLPNIPADDVPVSLTEDG SVELRRVGETPSFGFKPKHHWDIGENLGILDFERAAKVSGSRFVYYMGDGALLERAVYNF YLDQNTEAGYQEVIPPYMVNGASMYGTGQFPKFLESKAGYEITGTDLTMIPTAEVPLVNY YRNEIIPEEKLPVSFTALSPAFRSEAGSAGRDTKGLIRLHQFNKVEMVKFTKSEDSWDAL EQITHQAEDNLKKLGLAYHVITLTTSDMSFTAAMTHDLEVWFPAQDKYREISSCSNTTDF QARRAHIQYRDEDGKLHYVHTLNGSGLAVGRTVAAILENYQNEDGSVTIPEVLRPYMHGK TKIEKQH >gi|238617815|gb|GG669606.1| GENE 446 489769 - 489987 83 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLSPNSLTNIDFNYTKKVRKCKEKDSTPLNSYYWPLIIVKKKRLSFVSYNGKNLNSKSSS MRQNSEHIYIIL >gi|238617815|gb|GG669606.1| GENE 447 489986 - 490453 307 155 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 [Bacillus selenitireducens MLS10] # 5 154 3 153 158 122 40 2e-26 MADENISDLIERYLKEILADNEQVKIRRSEIAGLFDVVPSQINYVINTRFTIQNGYIVES KRGGGGYIRIEKVHLLDDIDVLNSLIDAIGNKLSKRDSETIVQTLYNNDLISRREVSIIL AAIDKDAIDLNNSDLTDIMRANIMVSILNRLRYER >gi|238617815|gb|GG669606.1| GENE 448 490469 - 492964 2328 831 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 5 820 6 813 815 901 56 0.0 MNNLFTPSAKNVLTIAQEQAKKFKHQAIGTEHLLLGLLIETNGIAYKALQQFSVTAEDIT EEVERFAGYGNLKDLSSNDYLPYSPKAKEVLAQAGEFAKKNGVPKVGTEHILLSLLTDET ILSSRILINLGLDLSQIRKVTLRKMGISGGSMASNMSSKQRGARPSKQKDSKTPTIDSLA RDLTEMARENRLDPTIGRDLEVKRVVQILARRTKNNPVLIGEPGVGKTAIAEGLAERIVN GDVPGDMVNKRLMMLDMGSLVAGTKYRGEFEDRLKKVIEEIYQDGNIILFIDELHTLIGA GGAEGAIDASNILKPALARGELQLIGATTLDEYQKYIESDAALERRFAKVTVDEPTADET VQILKGLRPKYEQHHHVEITDDAIETAVNLSNRYISDRFLPDKAIDLMDEAAAKVRIDHL QNSDVVDDHKKLSDLLAQLNEALVAQDYEKASKIRKQANKLQDELTKQDEEPEESSEAHY PVKETSQDVAQIVAEWTGIPVTRLSKTEADRLVNLEAVLHQRVVGQEEAISAVSRSIRRA RSGLKDPNRPIGSFMFLGPTGVGKTELAKAVAEAVFGSEDDMIRVDMSEYMEKYSTSRLI GSAPGYVGYDEGGQLTEKVRQKPYSVVLFDEVEKAHPDVFNLLLQVLDDGYLTDSKGRKI DFRNTVIIMTSNLGATTLRDKKTVGFGQEDTKEDYSAMKDTINAALKQRFRPEFLNRIDE VVVFHSLTKAELDQIVKLMTKPVIKRIHDQGIDIKVTKTAIGIISKVGFDPQYGARPIRR AIQTELEDNLSAKLLSKEIVPGDSVTVGGRNNQITISVKKPDRQALVNNKK >gi|238617815|gb|GG669606.1| GENE 449 493200 - 496808 3003 1202 aa, chain + ## HITS:1 COG:L0137 KEGG:ns NR:ns ## COG: L0137 COG0085 # Protein_GI_number: 15673782 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta subunit/140 kD subunit # Organism: Lactococcus lactis # 1 1164 1 1163 1196 1731 72.0 0 MAGHLVKYGKHRTRRSYARIKEVLDLPNLIEIQTNSYNWFLKDGLRETFDGIMPIDDFQG KLSLEFVDYQLLEPKYTVDEAREHEANYSAPLHITLKLTNHETDEIKTQDVFFGDFPLMT DQGTFIINGAERVIVSQLVRSPGVYYHEDTDKNGRISYGTTVIPNRGAWLEFETDSKNIS YVRIDRTRKIPLTELIRALGFGSDGEITDILGDNDSLELTLEKDVHKDTDDSRVEESLKD IYERLRPGEPKTAESSRSLLTARFFDPKRYDMAPVGRYKTNKKLSLKNRLLGLTLAETLA DPETGEVIVQKDTVVTKDVMKKLSPYLDQKEFKAYTFNPSDEAVVTEPMTVQIIKVYSAN DPEKVVPLIGNDNIPLAFKHITPADIIASMNYFFNLQEGIGSIDDIDHLGNRRIRSVGEL LQNQFRIGLSRMERVVRERMSIQDTSTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSYA RVNKYGFIETPYRRVDWTSHKVTDRIDYLTADEEDNFVIAQANSPLNDDGSFVNNVVMAR HKSNNIEISIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLVDPHA PLVGTGIEYKAAHDSGVALICKFAGTVEYVDAREVRIRRDDGTLDKYKLMKFRRSNGGKN YNQRPIVRVGDHVDPDEVLADGPSMEGGELALGQNPIVAFMTWQGYNFEDAIAISERLVK DDVYTSIHIEEYESETRDTKLGPEEMTREIPNVGEDALKNLDEGGTIRIGAEVHDGDILV GKVTPKGVTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIIQDVKVFTRENGDELSP GVNRMVRVYIAQKRKIQVGDKMSGRHGNKGTVSVVIPEEDMPFLPDGTPVDIMLSPMGVP SRMNIGQVLELHLGMAARKLGIHVATPVFDGASDKDIWNAVKEAGMPKDGKYILYDGRTG EPFDKPIAVGVMHYLKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL EAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQSLGLDMK VLDSSHKEIELRDLDDDDDVVNVDALSKMSDKKDQQKAESASEKKEVTDQTTKPTNVNNS ND >gi|238617815|gb|GG669606.1| GENE 450 496854 - 500498 2840 1214 aa, chain + ## HITS:1 COG:L0138 KEGG:ns NR:ns ## COG: L0138 COG0086 # Protein_GI_number: 15673781 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Lactococcus lactis # 1 1178 1 1178 1198 1763 73.0 0 MQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWECACGKYKRIR YKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDMSPRALEEII YFASYVVTDSGNTPLEKKQLLSEREYRDKKTEYGPRFEAQIGAEAIKTLLNDVDVAKEVT ELKDELKNATGQKRTRAVRRLDILEAFVQSGNKLSWMVLDTIPVIPPDLRPMVQLEGGRF ATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGRRGRPVAGPG NRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPSLKMNQMGLPVPMAMELFKPF IMKELVGRKLASNIKNAKRKIERQDDDVFSVLEDVIKEHPVLLNRAPTLHRLGIQAFEPV LVSGKSMRLHPLVCEAYNADFDGDQMAIHVPLSDEAQAESRLLMLAAGHILAPKDGKPVV TPSQDMVIGNYYLTMEEQGREGEGMIFNSPDEVGLAFRNGIVHWHTRIGIKASAYPEKSF TKEQLGKILVTSVGKVIFNRILPKDFPYINEPTDTNINGFVDDKYFLEPGEDIHEHLQNA ELVPPFKKGFLSDIIAQVYKIYKVTETSFFLDRMKDLGYDESTKSGLTVGISDITELPDK QEIIDEAHKKVEMVTKQFRRGLITDHERYERVIGIWNDAKDDIQKRLMEAQDPQNPIYMM SDSGARGNISNFTQLAGMRGLMAAPNGEIMELPITSNFREGLSVLEMFISTHGARKGMTD TALKTANSGYLTRRLVDVAQDVIVREKDCGTDRGLTISAITEGNEMIEPLYDRIVGRYAL KTVKNPKTGDVIVPAETMITEDQAQKIDQLGIKEITIRSAFTCNTVHGVCEKCYGRNMAT GDEVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGNADITQGLPRVQEIFEARNPKGK AEISEVTGTIESIEENPAERTKEVTVKGEADTRTYTVPITARMRVAEGDFIHRGSALNEG SVDPKELLKVRDVLSTENYLLHEVQKVYRMQGVEVADKHVEIMIRQMLRKVRIMDPGDTD VLPGTLMDINDFGSSNAGTVISGGIPATARPVLLGITKAALETNSFLSAASFQETTRVLT DAAIRGKNDPLVGLKENVIIGKLIPAGTGMPDYRGIKPEEIGGSSTDGVYSISELEEKMK AEDAKKSNPTKTSK >gi|238617815|gb|GG669606.1| GENE 451 500586 - 501284 181 232 aa, chain - ## HITS:1 COG:L0332 KEGG:ns NR:ns ## COG: L0332 COG1989 # Protein_GI_number: 15674010 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases # Organism: Lactococcus lactis # 1 219 1 213 221 79 33.0 7e-15 MIIFFQFFLGTSLASFIYLAVTRQLRCESIIFPRSHCDNCNQALAPYDLIPIISYICLMG KCRYCQNSIPFFSVLFELLLGSCLAVTPVTFTTIPYILSLLTLAYLSLFDYKSKQMPIPG ILILAGICLLNCQHSFFQVGIAALLYGLCLWLNYYQTLIGNGDIDILFCLWLCLSIGHLL WILCISCITALIYLIIAPWPKDNKIPFIPFITFGYFITLHYANALLSLITSP >gi|238617815|gb|GG669606.1| GENE 452 501521 - 501934 702 137 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509927|ref|ZP_03939976.1| 30S ribosomal protein S12 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 137 1 137 137 275 100 3e-72 MPTINQLVRKGRHSRSSKSKSPALNYAYNSYKKKQVVVPAPQKRGVATRVGTMTPKKPNS ALRKYARVRLSNLIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHVIRGALDTAGV TDRRQGRSKYGTKKPKE >gi|238617815|gb|GG669606.1| GENE 453 501989 - 502459 807 156 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509928|ref|ZP_03939977.1| ribosomal protein S7 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 156 1 156 156 315 100 2e-84 MPRKGNVQKREVLPDPMYNSKLVTRLINRLMLDGKRGTASEILYGAFDVIKEETGNEPVD VFEEAMKNVMPVLEVKARRVGGSNYQVPIEVRPDRRTTLGLRWLVNYARLRGEHTMTERL AREIMDAANNTGAAVKKREDTHRMAEANRAFAHYRW >gi|238617815|gb|GG669606.1| GENE 454 502535 - 504637 2050 700 aa, chain + ## HITS:1 COG:SP0273 KEGG:ns NR:ns ## COG: SP0273 COG0480 # Protein_GI_number: 15900207 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Streptococcus pneumoniae TIGR4 # 5 694 3 691 693 1010 72.0 0 MANKREFPLEKTRNIGIMAHIDAGKTTTTERILYYTGKIHKIGETHDGASQMDWMPQEQE RGITITSAATTAQWKDHRINIIDTPGHVDFTVEVERSLRVLDGAIAVLDAQAGVEPQTET VWRQASDYDVPRIVFVNKMDKIGANFDFSVQSIADRLNAKPLAIQMPIGAEDQFEGVIDL IEMKADLYDEDKLGTEWDTVDVPDEYKEEAKKRREQLVETVADVDDDIMDKYLEGEEISI PELKAAIRKATLNLELFPVLAGSAFKNKGVQMLMDATIDYLPSPLDVKPYNATDPDTGDK VELKANDDASFAALAFKVATDPFVGRLTYIRVYSGTLESGSYILNATKDKRERVGRLLQM HSNHRQEIPEVFSGDIAAAIGLKNTTTGDSLTDVDHPLHLESMEFPDPVIQVAVEPKTKA DQDKMNVALQKLSEEDPTFKAETNPETGETLIAGMGELHLDIIIDRMRREFNVDATVGAP QVSYREAFTKQTSAQGKFIRQSGGKGQYGDVWIEFTPNEEGKGFEFEDAIVGGVVPREFI PAVEQGLKESLANGVLAGYPLVDLKAKLYDGSYHEVDSSEAAFKVAASLALRNAAKTAAP VILEPIMKVDINVPEEYMGDIMGQVTARRGRVDGMESRSGAEVIHSFVPLAEMFGYATTL RSASQGRGTFTMTFDHYSAVPKSIQEEIIKKNGGNTADNK >gi|238617815|gb|GG669606.1| GENE 455 504962 - 505345 651 127 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509930|ref|ZP_03939979.1| 30S ribosomal protein S10 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 127 1 127 127 255 100 3e-66 MLCHGFGGNFHGVSLIFKIDEGGNTMAKQKIRIRLKAYEHRILDQSADKIVATAQRTGAT ISGPIPLPTERTIYTVLASPHKFKDAREQFEILTHKRLIDILNPTPKTVDSLMKLDLPSG VDIEIKL >gi|238617815|gb|GG669606.1| GENE 456 505374 - 506009 1090 211 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509931|ref|ZP_03939980.1| 50S ribosomal protein L3 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 211 1 211 211 424 100 1e-117 MTRKGILGKKVGMTQVFTENGELVPVTVVEVTPNVIMQIKTAENDGYDAVQLGYADKRAV LTNKPEQGHAKKANTTPKRFIKEIKDVELGDYKVAEEVKADIFKPGDIVDVTGTTKGHGY QGNIHKDGQSRGPETHGSRYHRRPGSLGVIINRVVPGMKLPGRMGNKTVTIQNLEVVSTD NDNNVILIKGNVPGANKSFITIRTAVRGANK >gi|238617815|gb|GG669606.1| GENE 457 506027 - 506650 1038 207 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509932|ref|ZP_03939981.1| 50S ribosomal protein L4 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 207 1 207 207 404 100 1e-111 MTDVALYKQDGSQNGTVSLNDDVFGIEPNNNVVFDAVVMQRASRRQGTHSVKNRSAVRGG GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYHLPKKVSRLALKSVLSEKVAD EKLVVVDSLVFETPKTKEFAALLEKLNVSTKTLIVLEDGNEKASLSAHNLENVKVVSADG INTLDVADHDKVVITKAALSQVEEVLA >gi|238617815|gb|GG669606.1| GENE 458 506650 - 506937 468 95 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509933|ref|ZP_03939982.1| ribosomal protein L23 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 95 1 95 95 184 100 4e-45 MESRDVILRPVITEESTSKMDNKTYTFDVDLRATKTQVKKAVEDIFDVKVVRVNIMNVRG KLKRQGRYAGYTKKRRKAIVTLTQDSKEIQLFSEE >gi|238617815|gb|GG669606.1| GENE 459 506963 - 507802 1360 279 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509934|ref|ZP_03939983.1| 50S ribosomal protein L2 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 16 279 1 264 264 528 100 1e-148 MAIKTYKPTSNGRRNMTSLDYSAITKSKPEKSLLEPKSKTAGRNNYGHMTVRHRGGGNKN QYRVIDFKRNKDNVPAIVKAIEYDPNRTANIALLVYVDGIKSYIIAPKGLKVGDKVESGT EADIKVGNALPLANIPVGSIIHNIELKPGKGGQLARSAGASAQLLGRDGKYALVRLSSGE VRMILATNRATIGAVGNEEHELVNVGKAGRTRYKGQRPHVRGSVMNPNDHPHGGGEGKAP VGLPSPLSPWGKKTVGKKTRSKKARSNKFIVRRRKGSKM >gi|238617815|gb|GG669606.1| GENE 460 507847 - 508122 483 91 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509935|ref|ZP_03939984.1| 30S ribosomal protein S19 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 91 1 91 91 190 100 8e-47 MSRSLKKGPFADEYLLKKVDAQKDQEKKSVIKTWSRRSTIFPSFIGYTFAVYDGRKHVPV FIQEDMVGHKLGEFVPTRTFHGHGTDDKKTV >gi|238617815|gb|GG669606.1| GENE 461 508139 - 508495 564 118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509936|ref|ZP_03939985.1| 50S ribosomal protein L22 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 118 1 118 118 221 100 3e-56 MAEQVTSAKATAKTVRIAARKVRLVIDLIRGKSVAEAAAILDFTPRGASPVVSKVLKSAV ANAENNFDLDSENLVVSEAYVNEGATLKRFRPRAKGSASPINKRTSHITIVVSEKEEG >gi|238617815|gb|GG669606.1| GENE 462 508499 - 509164 1128 221 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509937|ref|ZP_03939986.1| 30S ribosomal protein S3 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 221 1 221 221 439 99 1e-121 MGNKINPNGLRVGIIRDWEAKWYAGKDYAAYLREDLQIRKYIEKRLANASVSTVEIERAA NRVNISIHTAKPGMVIGKGGSEVESLRKELNNLTGKRVHINIIEIKKPDLDAKLVGENIA RQLEGRVAFRRAMRQAMQRTMRAGAKGIKTQVAGRLNGADMARVESYSDGTVPLHTLRAD IDYSWVEAFTTYGSIGVKTWIYRGEILPEKPKNSEADKGGK >gi|238617815|gb|GG669606.1| GENE 463 509167 - 509601 755 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509938|ref|ZP_03939987.1| 50S ribosomal protein L16 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 144 1 144 144 295 100 2e-78 MLVPKRVKHRREHRGKLRGSAKGGTTVTFGDYGLQSLDSHWITNRQIEACRVAMTRYMKR GGRVWIKIFPHKSYTEKGVGVRMGNGKGTPAGWVSPVKRGKILFEIGGVSEEVATEALRL ASNKLPVRTKIVKREEVGGESNEG >gi|238617815|gb|GG669606.1| GENE 464 509591 - 509785 314 64 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509939|ref|ZP_03939988.1| ribosomal protein L29 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 64 1 64 64 125 100 3e-27 MKAKEINELTTAQMIDKEKDYKDELFNLRFQLATGQLENTARLKQVRKNIARIKTALRQQ ELNK >gi|238617815|gb|GG669606.1| GENE 465 509810 - 510076 438 88 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509940|ref|ZP_03939989.1| ribosomal protein S17 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 88 1 88 88 173 100 1e-41 MAEERNQRKVYQGRVVSDKNNKTITVLVSTYKKHATYGKRVRYSKKFTAQDENNEAKVGD IVRIMETRPLSKTKRFRLIDIVEKAVII >gi|238617815|gb|GG669606.1| GENE 466 510134 - 510502 595 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509941|ref|ZP_03939990.1| ribosomal protein L14 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 122 1 122 122 233 99 8e-60 MIQQESRLKVADNSGARELLTIKVLGGSTRRYAGIGDTIVATVKQATPGGVVKKGDVVKA VIVRTKSVTRRTDGSYIRFDENAAVLVRDDKSPQGTRIFGPVARELRDNNFMKIVSLAPE VL >gi|238617815|gb|GG669606.1| GENE 467 510531 - 510839 512 102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509942|ref|ZP_03939991.1| ribosomal protein L24 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 102 1 102 102 201 100 3e-50 MFIKTGDKVRVISGKDKGKEGTVTKTIASKDRVIVEGVNKVKKHTKASSTNPNGGIIDAE APIHVSNVMLIDPSTNEPTRVGIKVEDGKKIRYSKKSQKAID >gi|238617815|gb|GG669606.1| GENE 468 510870 - 511412 907 180 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509943|ref|ZP_03939992.1| 50S ribosomal protein L5 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 180 1 180 180 353 100 5e-96 MTSRLHEQFDSEIVPHMVEKFSYKSVMQAPKIDKIVLNMGVGDAVTNAKNLDEAVSELAL ISGQKPLVTKAKKSIAGFRLREGMSIGAKVTLRGDRMYDFLDKLINVSLPRVRDFHGVSS RAFDGRGNYTLGVREQLIFPEIDYDNVNRVRGLDIVIVTTANTDEESHELLAQFGMPFAR >gi|238617815|gb|GG669606.1| GENE 469 511429 - 511614 328 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509944|ref|ZP_03939993.1| ribosomal protein S14 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 61 1 61 61 130 98 7e-29 MAKKSLIVKSERPAKFSTQNYTRCERCGRPRSVYKKFHLCRLCIRELAHKGQIPGMKKAS W >gi|238617815|gb|GG669606.1| GENE 470 511643 - 512041 652 132 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509945|ref|ZP_03939994.1| 30S ribosomal protein S8 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 3 132 1 130 130 255 100 2e-66 MSMTDPIADFLTRIRNANMVYHETVEVPASKIKRDIAEILKREGFVRDVEYIEDDKQGVI RVFLKYGKDKQRVITGLKRISKPGLRSYVKADAVPKVLNGLGIAIISTSNGVITDKQARA QKIGGEVLAYVW >gi|238617815|gb|GG669606.1| GENE 471 512069 - 512608 913 179 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509946|ref|ZP_03939995.1| ribosomal protein L6 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 179 1 179 179 356 99 1e-96 MSRIGYKTVVLPKGVEVSTDGNKVTVKGSKGSLTREFVSEIKMNVKDNEVNFEPVVDYNN KVRALHGTMRANFNNMVEGVTDGFKKTLKLVGVGYRAALKGKTLTLSVGYSNPVDMTVPE DLTVEVPDNTTIHISGISKQHVGDFAASVRAVRSPEPYKGKGIRYENEHIIRKEGKTGK >gi|238617815|gb|GG669606.1| GENE 472 512643 - 512999 587 118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509947|ref|ZP_03939996.1| 50S ribosomal protein L18 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 118 1 118 118 230 99 7e-59 MISKPDKNKSRKRRHNRVRNKISGTAECPRLNVFRSNKNIYAQVIDDVEGVTLVSASTLD SAISDGNKTEKAASVGKLVAERASKKNIKKVVFDRGGYLYHGRVQALADAARENGLEF >gi|238617815|gb|GG669606.1| GENE 473 513021 - 513524 826 167 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509948|ref|ZP_03939997.1| 30S ribosomal protein S5 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 167 1 167 167 322 100 1e-86 MKKFIDPDKLELEDNVVSINRITKVVKGGRRLRFAALVVVGDKHGHVGFGTGKAQEVPEA IRKAVEAARKNLIEVPIVGTTIPHEVVGTYGGGRIMLKPAEEGSGVAAGGAVRSVMELAG IDDVTSKRLGSNTPVNVIRATFEGLVALKSAEEISALRGVSTQHLAE >gi|238617815|gb|GG669606.1| GENE 474 513539 - 513724 294 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509949|ref|ZP_03939998.1| ribosomal protein L30 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 61 1 61 61 117 98 6e-25 MAQLKITLKRSVAHRLPNQRKIVKALGLGRINSTVVKPDNESIRGALFKIAHLIEVEQVK D >gi|238617815|gb|GG669606.1| GENE 475 513750 - 514184 723 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509950|ref|ZP_03939999.1| ribosomal protein L15 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 144 1 144 144 283 100 1e-74 MKLNELKAAEGSRSLRTRKGRGRSAGKGKTAGRGQKGQKARGKTRVGFEGGQMPLYRRTP KRGFNNINRKEYAVVNVAKLDVFDEGTEVTPELLQDRGIVKNAKSGIKVLGDGGLTKKLT VKANKFSKTAQSVIENAGGKIEVV >gi|238617815|gb|GG669606.1| GENE 476 514184 - 515503 769 439 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 7 434 15 441 447 300 38 5e-80 MLSTLTGAFKVKEIRNKILFTLFVLIIFRLGSFITVPGVNAKALTSVASSGLVSILNTFS GGGLTNYSIFAMGVSPYITAQIIIQLLQMDIVPKYVEWGKQGEVGRRKLNQHTRYLTVVL AFFQSVGITAGFNQLSSLNLVTNPSVKTFIVIGIILTGGTMLTTWMGDMITERGIGNGIS MIIFAGIIARIPTGLQSLWQQYFVGVTGSDLWQPILFSIALVIIVLAIITFVTWVQQAER RIPIQYTRRVAGSPDSSYLPLKVNVAGVIPVIFASSFIATPQTILMAFTNNYSTTTWYQV LNNVFNMQTTTGAAFYTILIVMFTFFYAFVQVNPEKLSENLQKQGSYIPGVWPGHETQSY VSNLLMRLSTVGAIFLGVVALIPLVAQNIWNLDESIGLGGTSLLIVVGVAIETIRQIRGL MMKREYVGFIKGSRPTNGE >gi|238617815|gb|GG669606.1| GENE 477 515537 - 516193 637 218 aa, chain + ## HITS:1 COG:L140714 KEGG:ns NR:ns ## COG: L140714 COG0563 # Protein_GI_number: 15674059 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Lactococcus lactis # 3 215 1 214 215 268 59.0 4e-72 MALNLILMGLPGAGKGTQAQFIVDKYQIPHISTGDMFREAISNGTPLGLKAKSFTDKGNL VPDEVTNGIVKERLSHNDTQPGFLLDGYPRTQEQADALADMADELGKPLSAVINIDVDPE ILTNRLTARFICKNCGATYNKLYHMPKVNGTCDICGHHEFYQRDDDKPEAVKNRLKVNVK MNTPLISYYKDRDLLFNVNGDQDIDKVWQDVDKILSTL >gi|238617815|gb|GG669606.1| GENE 478 516322 - 516540 310 72 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 72 1 72 72 124 83 9e-27 MAKDNVIEVEGKVVETLPNAMFRVELENGHEILAHVSGKIRMHYIRILPGDKVTVEMSPY DLTKGRITYRFK >gi|238617815|gb|GG669606.1| GENE 479 516576 - 516695 212 39 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116334246|ref|YP_795773.1| 50S ribosomal protein L36 [Lactobacillus brevis ATCC 367] # 1 39 1 39 39 86 100 2e-15 MKVRPSVKPMCEHCKVIKRKGRVMVICSANPKHKQRQGK >gi|238617815|gb|GG669606.1| GENE 480 516722 - 517087 602 121 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509954|ref|ZP_03940003.1| ribosomal protein S13 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 121 1 121 121 236 100 1e-60 MARIAGIDLPRDKRIVIGLTYIFGIGTSTSEKILAQAGVSEDVRVRDLTPDQEDKIRAIV SDLKIEGDLRREVSMNIKRLQEIGSYRGMRHRRGLPVRGQNTKNNARTRKGKATAGVGRR K >gi|238617815|gb|GG669606.1| GENE 481 517112 - 517501 645 129 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509955|ref|ZP_03940004.1| ribosomal protein S11 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 129 1 129 129 253 100 1e-65 MVNKKSSRKRRTKKNIASGVAHIHSTFNNTLVMITDTQGNAIAWSSAGALGFRGSRKSTP FAAQMAAEAAAKSSMEHGMKSVEVAVKGPGSGREAAIRALQATGLEVTAIRDVTPVPHNG SRPPKRRRV >gi|238617815|gb|GG669606.1| GENE 482 517597 - 518547 935 316 aa, chain + ## HITS:1 COG:lin2755 KEGG:ns NR:ns ## COG: lin2755 COG0202 # Protein_GI_number: 16801816 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Listeria innocua # 1 316 1 314 314 406 71.0 1e-113 MIEFEKPNIHKIEETKNFGEVVVEPLERGYGTTLGNSLRRTLLSSLPGAAVTSIQIDDVL HEFSTIKGVVEDVTQIILNVKKISLKLDGPEDEEENLEIDVIGPADVTAGDIQGDSDVTV LNPDLHIATVAEGATFHMRLTANRGRGYVSAVENKKRATEMPIGVLPVDSIYTPIERVNY QVESTRVGQRDDFDKLTLDIWTNGSITPSEAVSLAAKILTEHLEMFVDLTDEAKNTEIMV EKEETHKEKMLEMTIEELDLSVRSYNCLKRAGINTVQELTEKTEADMMKVRNLGRKSLEE VKEKLAALGLSLRKED >gi|238617815|gb|GG669606.1| GENE 483 518576 - 518959 553 127 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509957|ref|ZP_03940006.1| ribosomal protein L17 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 16 127 1 112 112 217 99 6e-55 MSYRKLQRSSEHRRSLLRNLTTELIIHGQIITTEARAKEVRSTADKMISLGKRGDLHARR QAASFVRNVVADVKEDGDDITVTTALQKVFGELATKYSDRNGGYTRILKTMPRRGDGAPM VVLELVD >gi|238617815|gb|GG669606.1| GENE 484 519154 - 519987 589 277 aa, chain + ## HITS:1 COG:SP2221 KEGG:ns NR:ns ## COG: SP2221 COG1122 # Protein_GI_number: 15902025 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 1 266 1 267 275 273 52.0 2e-73 MKDIIQVDKISYNYPDQPLLFDQLSLDVHEGEWLAIIGQNGSGKSTLARLIDGLIVLNEG HITVDGLQVNDQNIYNVRSKIGIVFQNPEDQFVGATVEDDVAFGLENQLVDRSKMHDIVE ESLKSVGMWDFRERIPANLSGGQKQRVAIAGIIALSPKIIILDEATSMLDPRGRKEILAL VQRLKNENHLTVISITHDIDEAAGADRVVILNHGKIIDENTPRGIFSHSDKLRQIGLDAP YTSKLLAALSERGVSDEKSYMNDEELIAWIQQLVSTK >gi|238617815|gb|GG669606.1| GENE 485 519957 - 520829 406 290 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 1 276 126 392 398 160 36 7e-38 MDTAISLNKVTHTYQANTPFAQNAIDNVTLQIPRGSFTAIIGHTGSGKSTLVQHINALLK PTEGHLEVLGRVIDPNTTNKNLKAFRKHVGMVFQFPEKQLFEETVLKDIMFGPKNYGVND DEAKKSAFSAMALVGLDKALADKSPFDLSGGQMRRVAIAGVLAMNPEILILDEPTAGLDP RGHQEIMDLARYLNKNKQMTIILITHQMDDVIDYATNVIVMDKGKIVKVGSPAQVFSDPK WVYDMQLDLPSSAEFAQQLKKAGINIGQLPLTIDALADRIARLVGKGDTK >gi|238617815|gb|GG669606.1| GENE 486 520826 - 521620 576 264 aa, chain + ## HITS:1 COG:lin2783 KEGG:ns NR:ns ## COG: lin2783 COG0619 # Protein_GI_number: 16801844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Listeria innocua # 1 248 2 249 266 242 47.0 4e-64 MSNFIFGRYLPGHSWIHQMSPQSKLLLSFYFVIIIFFANNLISYGILSILILIVILLSGI SIMYFLKGIRPLIWLIIFTVLLQILFSSGGRVLWHFGPFSVTNESLINGGFIFMRFLLII MISTVLTLTTTPLAIADGVQTILKPLKKVKFPVDTLALMLSIALRFVPTLMDEMETIMNA QRARGVDFGSGSLKHRVKAAVPLLVPLFTGAINHAENLSTAMEARGFSDSEHRTKYRQYR WQVKDTISWLVFLAIGAVVIFIRK >gi|238617815|gb|GG669606.1| GENE 487 521657 - 522424 565 255 aa, chain + ## HITS:1 COG:SP1599 KEGG:ns NR:ns ## COG: SP1599 COG0101 # Protein_GI_number: 15901439 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Streptococcus pneumoniae TIGR4 # 2 242 10 248 249 186 38.0 3e-47 MYDGTNFSGFERQPNRRTIEGVLTQKVNVMAKMPEPPIIIYGSGRTDAGVHAVAQVAHFD FPFDLSTEAIYRGLNSMLPLDMEITKVEKVSNDFHARYDVSGKKYFYRMYLGEFQNPFKR NYTGHWKFPIDMEKVNHALADLVGEHDFSSFVASGSTARSNIRTIYSASAKLDQAENEVH LEFYGNGFLYNMVRIMVGVVAEIGSGMRPESDVLRLFEVKDRDQARRTMPASGLYLKRVF YEGDDPEHPTKLPKR >gi|238617815|gb|GG669606.1| GENE 488 522471 - 522998 920 175 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509962|ref|ZP_03940011.1| 50S ribosomal protein L13 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 175 1 175 175 358 100 2e-97 MLVGIVCPTMSPGNLFGVEQTQNLEEYKVRTTYMAKPGEVERKWYVVDATDVSLGRLSSV VASILKGKNKPTYTPNVDTGDNVIVINAGKVGLTGRKDKNKIYYHHTRFIGGLKQKTAGE FREKNPEKLIETSVKGMLPHGTLGHKIGLKLHVYAGPEHDHQAQKPEALDIKNLI >gi|238617815|gb|GG669606.1| GENE 489 523012 - 523404 657 130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509963|ref|ZP_03940012.1| 30S ribosomal protein S9 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 130 1 130 130 257 99 5e-67 MAQVQYRGTGRRKDSVARVRLVPGTGKIIMNDKAIEDYIPFANLREVVVQPFNVTETLGN YDTLVNVNGGGFSGQAGATRHGIARALLSVDPDFRGPLKRAGLLTRDARMKERKKPGLKK ARKASQFSKR >gi|238617815|gb|GG669606.1| GENE 490 523764 - 524360 541 198 aa, chain + ## HITS:1 COG:CAC0331 KEGG:ns NR:ns ## COG: CAC0331 COG4684 # Protein_GI_number: 15893623 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 6 194 8 191 192 79 34.0 4e-15 MAEKKKTLRFNLLAMFIAIIILQTSIPLIGYIPIGPLSITIISATVTIATILMGTRDGAI IGGVWGLITFIRAYIWPTSPLATIVFVNPFVSVLPRVLIGVVAGVTYHALRKWIKRQAVG VSIAAILGSLTNTIFVLGLIYLFYKAKAPQLYQINIRELMPYLLGVVGTNGIPEAIFSGI VTPLIALPLQKVLKGHLD >gi|238617815|gb|GG669606.1| GENE 491 524424 - 524705 332 93 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1693 NR:ns ## KEGG: Lbuc_1693 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 75 1 75 99 117 93.0 1e-25 MAKNTEVSEAQSKFNVGDEVSFKIEKQTFKGFIDKSYTNSFLITFESDDPEIIDKYHKKV VINNRHLKLIKAAPKIKDPDSDKEDKDDKPAKK >gi|238617815|gb|GG669606.1| GENE 492 524926 - 525501 538 191 aa, chain + ## HITS:1 COG:lin1178 KEGG:ns NR:ns ## COG: lin1178 COG1705 # Protein_GI_number: 16800247 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 37 190 53 205 289 153 48.0 2e-37 MLVLIGFGLFIILGFRLLSANVPESNQVDNARSELAAQHRKFINKLAPQAQLLQGQYNVL PSVTLAQAILESNWGTSQLSSKYNNLFGVKAQSSNTKSVYLDTQEYVDGRYVTVKARFEV YDSWNDSLAEHAKLLAYGTKWNPDQYRDVVSANNYVQAAQGLEKDGYATDPTYTEKLISL IKNYKLYQFDD >gi|238617815|gb|GG669606.1| GENE 493 525517 - 526089 496 190 aa, chain + ## HITS:1 COG:lin1998 KEGG:ns NR:ns ## COG: lin1998 COG0503 # Protein_GI_number: 16801064 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 190 1 190 192 228 64.0 5e-60 MDLLKKRIVEDGTVLPGNVLKVDNFLNHQVDAQLMDKIGAEFARLFKDEKVTKVVTVESS GIAPALTTAIHLGVPLIFARKHKSLTLTDNLYTASVYSYTKQVSNDISVDKRFLNSDDRI LIIDDFLANGQAVQGLLEIAKLADVSVAGIGIVIEKSFQKGHTLIEKAGIRLESLARIAS LNDGKVTFVD >gi|238617815|gb|GG669606.1| GENE 494 526199 - 527359 711 386 aa, chain + ## HITS:1 COG:lin1886 KEGG:ns NR:ns ## COG: lin1886 COG0026 # Protein_GI_number: 16800952 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Listeria innocua # 29 374 28 373 374 217 34.0 3e-56 MAEANILYPNQTIGILGDSISSPTLLYFAKKMGFNVGMYSSNENSKTIRLADYKYIGPMD DKQTLKMFAERCDVVVYNSPSINSEVIRYISQFTSVPQSDSLLDIIQDRLIERSFFETLN INMAPYATIVTLEDIYQAINSIGYPAILKPIQRGLLGDKELVIKNQADIVAASGLLDSGT YIMESFVEHDTDYSIIVTRQMDGTTVVFPIVEVIYNGEQIMTAFTPVKLDPSVEKEMNRI TNEIAKNIDYVGTFEVSLFLAKSGSIYVNRVAPILSPAGFLFDFAANTNEFEQHIRAIAG LPLTKIIVGIPTVFQAIRKKEYQRVQTQWVIKGNWHFSFYGNKTDNPNDSIGHILIPTKS ISDTLMKVEATSIWNDIDFKSKYEKN >gi|238617815|gb|GG669606.1| GENE 495 527542 - 529692 1817 716 aa, chain + ## HITS:1 COG:BS_yerF KEGG:ns NR:ns ## COG: BS_yerF COG0210 # Protein_GI_number: 16077729 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 1 715 30 739 739 805 57.0 0 MAGAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNKAAREMRERVSKLLDESGDDVWV STFHALCVRILRRNIDQLGFNRAFTIADTSEQRTLVKRVLRELNIDPKKFDPRAVLSSIS NAKNDLLTPKAFKAQADNDFDQIVADVYARYQAELRQNESLDFDDLIMTTIELFDQFPDV LSYYQDKFHYIHVDEYQDTNEAQYRLVNTLAKKSKNICVVGDADQSIYGWRGANMQNILD FKEDYPDAHVTLLEQNYRSTKTVLDAANAVIAHNLNRADKNLWTENEQGEKISYYRGQTE NDEARYVVAKIQEEMGKPKRNYGSFAILYRTNAQSRVIEETLLKANIPYTMVGGHKFYDR KEIRDALAYLTLLGNPRDSMSFERVINEPKRGIGETSLEKLRTFANDHGWSLLEASKNID LANEISSRAKNSISMFEQIISDVAKKLDTMTITELTEEILDKSGYLSTLKSSKSLQAQTR LENLEEFISVTQKYDQDNPDQGGQDNLVNFLSDLALVSDQDDLDEKTSEVTLMTMHAAKG LEFPVVFIMGMEEGLFPLSRAAQDESELQEERRLAYVGITRAKEKLYLTNAYSRMLYGRR QNNPESRFVNEIKPELIQYENVNQQEKPLSTPFDRRTRRATATTYHQPAQKVIKPKGTGA DRSSWSVGDKVSHKAWGTGTVVKVSGTGEDMELDIAFEQKGIKRLLAAFAPITKQE >gi|238617815|gb|GG669606.1| GENE 496 529719 - 530321 411 200 aa, chain + ## HITS:1 COG:lacA KEGG:ns NR:ns ## COG: lacA COG0110 # Protein_GI_number: 16128327 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Escherichia coli K12 # 1 193 3 185 203 178 46.0 6e-45 MSLKSKMESGEVYRESGFTDPIDINYAKKLEKQRQLGKHLAFKFNQTDPNDELTRQSLMK QLFHQVGKRPFIEGPLYTSYGCNTTIGDDFYANFNLTIVDDISVTIGNHVMCGPNVMISV TGHPLEGPRRRNGEQFSKAVRIGNDVWIGGNVAILPGVSIGNNVVIGAGSVVTHNVPDNS VVVGTPGRVVKKVPPINEQL >gi|238617815|gb|GG669606.1| GENE 497 530378 - 532390 1309 670 aa, chain + ## HITS:1 COG:L0304 KEGG:ns NR:ns ## COG: L0304 COG0272 # Protein_GI_number: 15672401 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Lactococcus lactis # 7 659 4 648 654 708 55.0 0 MTEQQAESAAQELREKLNKWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIVTPDSP TQKVGDHTLPGFTKVPHEIPMLSLGDVFSIEELKAFADRLSDSESVPFEYNCELKIDGLA ISLRYEDGILVQGATRGNGQIGEDITRNLKTIKSIPQRLSRPINIEVRGECYMPKESFVE LNQQRQVEGVAPFANPRNAAAGSLRQLDSRVTAHRKLSTFMYNVANYDDLESDTQSGMLE ELKKLGFTINADYQVAHNMDDIDQYVERYTKQRDTLAYGIDGIVIKVNSLPLQRSLGATV KVPRWAIAYKFPPEEAETIVRDIEWTVGRTGVVTPTAVMDEVTLAGTTVSRASLHNPDYL REKDIRISDTVKLHKAGDIIPEISTYVKDKRQVDSQPYEIPTKCPSCDSELVHLDEEVAL RCINPQCPAQLKEGLTHFASRDAMNIDGLGPKIIAQLFKKHMLTDVAGLYELTFDQLMTL DKFGEKSAGNLLTAIANSRNNSCERLLFGLGIRHVGAKAARLIAQRFKNIDKVMDATAQE IAEIDTMGMIIADSVVTYFSMPQSKELISQLKQVGVNMDYLGATDEDLKESDSVFNGKRL VLTGKLQHITRPEATRWLENHGAKVSGSVSKKTDIVVVGEDPGSKYDKARNLGIEVWDEN RFAEAMADEK >gi|238617815|gb|GG669606.1| GENE 498 532393 - 533550 805 385 aa, chain + ## HITS:1 COG:lin1869 KEGG:ns NR:ns ## COG: lin1869 COG4851 # Protein_GI_number: 16800935 # Func_class: R General function prediction only # Function: Protein involved in sex pheromone biosynthesis # Organism: Listeria innocua # 11 383 9 371 371 274 39.0 2e-73 MEESILKKIFLGISVILTGILLSACGSVDNLSNDTNSSGSSKAKTQLTGQTNTGYYQGVI KNGRYQTSKSRGVSVQQESNQFNIKGFENGLLNISKKQFSTKKYIFQEGQYLSTKRVEAW LERKSKSNPSGLNPKQSKSTNPNTRTPVYLSQIDEQDFMTQNGKSLSLQGMTIGLAINSV DYYKKTQYGPTYETHISNAQVNKEGKKIAGQVLQRLRQNKKLKNIPIVIALYKQASDDSL VGGNFFAYATNNSGANTISKWTKVKQKNYVFPLQSNKKGPSQNDEDSFDNFKSQVQTFFP NLSGVTAQAQYTDGSLTGMNIDITTQFYSQTEIISFTQYIQSAAQKYLPANAPIDITVQS TEGIQSFLSRKTNEKKFSAHIFNSY >gi|238617815|gb|GG669606.1| GENE 499 533635 - 533946 379 103 aa, chain + ## HITS:1 COG:BS_yerL KEGG:ns NR:ns ## COG: BS_yerL COG0721 # Protein_GI_number: 16077735 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Bacillus subtilis # 4 97 3 96 96 83 50.0 9e-17 MTEKISEDQVKHVAELAKLKIDDDQLPYFTTQLDKIIGLFETLSKVDTDGVEPTSSVTDQ INVMRDDVADNWNQRQALLDNAPDTQDGYIRVPTIIDESGSNE >gi|238617815|gb|GG669606.1| GENE 500 533946 - 535409 403 487 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 15 466 16 450 468 159 30 1e-37 MNYFNQSLASIHKQLVNKDISVEELTKQTLDNIKMVDGDINAFLTLDEEGALKQANKLDE KGIDSDNLLSGMPVAVKDNIVTKGLKTTAASKILENFTPIYDATAAEKIKNLGTITVGKT NMDEFAMGGSTENSAFKITHNPWDKTKVPGGSSGGSAAAVAAGEVIAALGSDTGGSIRQP ASFNGVVGMKPTYGRVSRWGLIAFGSSLDQIGPITRNVSDNATLLNAIAGHDDHDLTSST KEVPDFTSTLNKGVKGLRIGIPSEFMSQGLDDDVKKVVNDTAETFKKLGATVGEVSLPHT KYGVAAYYIISSSEASSNLQRFDGIRYGRRAKDVKNLDDLYIKSRSEGFGDEVKRRIMLG TFSLSAGFYDAYFKKAAQVRTLMINDFTNVFKDYDLILAPTAPTPAYGIGEDVSDPMTMY MNDVLTLPVNLAGLPGMSIPAGFSKGLPVGVQLIGRPYDELTVYQAGSAFEKDTDFAKQT PKMGGNN >gi|238617815|gb|GG669606.1| GENE 501 535409 - 536830 1283 473 aa, chain + ## HITS:1 COG:BH0667 KEGG:ns NR:ns ## COG: BH0667 COG0064 # Protein_GI_number: 15613230 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Bacillus halodurans # 1 473 1 475 476 598 64.0 1e-170 MNFETTIGLEVHVELKTNSKIFSPSPVEFGDKPNANTNVIDWGYPGVLPTTNKGVVHDGI MAGLALHAEIERRPHFDRKNYFYPDNPKAYQITQSETPIAHDGWVEVEVDGQKKKIGIAE MHIEEDAGKNTHESEHSFVDLNRQGTPLIEIVSKPDIASPDEAYAYLEQLRQIVQFTGVS DVKMEEGSMRVDTNISIRPVGQKEYGTKVEMKNINSFNYVRKSLEYEEQRQQRVLMSGGT IQQETRRFDETTGQTELMRVKEGSDDYRYFPEPDLPVLTISQEWIDQIANELPEPPAERR QRYVNELGITDYDAMVVTQTKEMSDFFDKMISAGADAKLAANYLQGSVNEYLNDNQVELQ NTDITPEHLATMIKLITDGTISSKMAKKVFKAITKGEEPKKFVEEKGMVQLSDPSQLQPI VDKIVAANPQSVEDFHNGKDRAIGFLVGQIMKETHGKANPQVVNKLLKDSMNK >gi|238617815|gb|GG669606.1| GENE 502 536846 - 537850 816 334 aa, chain + ## HITS:1 COG:SPy0752 KEGG:ns NR:ns ## COG: SPy0752 COG1597 # Protein_GI_number: 15674801 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 4 330 6 334 340 403 62.0 1e-112 MRKRARVIYNPTSGREILKQKMVDILNVFEQAGYETSAFATTPEKDSAKNEARRAAQDGF ELVVAAGGDGTINEVVNGIAPLKKRPRMAIIPAGTTNDYARALHIPREDPVDAAKIIYKN QTIDMDIGRAGENYFINIAAGGLLTELTYDVPSDLKTFFGYLAYLVKGAELLPRIKPIDM DIKYDEGEFKGKASMFFLALTNSVGGFEQIVPDASLDDGKFTLIIVKTSNLVEILHLASK VLNGGRHVDDPRIIYKKTRKVTAKPAKNGDRMLINLDGEYGGDAPMTFVDLKQHITFFAN LDEIPDNAYSEETDEMKQVEKNFVKGVDKLPDKE >gi|238617815|gb|GG669606.1| GENE 503 537930 - 539300 965 456 aa, chain + ## HITS:1 COG:SP1029 KEGG:ns NR:ns ## COG: SP1029 COG2265 # Protein_GI_number: 15900900 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 7 454 2 450 543 464 51.0 1e-130 MKIQVPVQKNQKYDVEVTDLTYQGLGVAKIDDFPIFIEDALPTELVTILVTKVKKNFAFG KALKINQQSKDRVKPIDGAYTQTGIAPLQHLAYPAQLEFKRHQIQNDFNKMKLDVEVSPT IGMDKPYHYRNKAQIPVRMLNGRLQTGFYRKHSHDLVPIEDFYIQDPEIDKAVVIVRDIL RKFQITPYDEQTHRGVIRNIMVRRGHYSHEMMIVLITKSKKLPSEAEIISETVNQLPEVK SIVQNINPKNTNSLMGNQNKVLWGKGTITDQLMGLDFEISPNSFYQVNPIQTEKLYKLAI QKAQLNKDDIVIDAYCGIGTISLSLAKVVKKVYGVEIVPEAIEDAKRNAHINKISNCKVV VAKAEEQLGKWQKAGLKPDVIVVDPPRKGLDESLIESVAEMSPQRLIYVSCNPATLARDA KLFAEHGYQINQPIQPVDQFPQTVHVESVTVFEKSR >gi|238617815|gb|GG669606.1| GENE 504 539737 - 540936 1083 399 aa, chain + ## HITS:1 COG:lin1013 KEGG:ns NR:ns ## COG: lin1013 COG4175 # Protein_GI_number: 16800082 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, ATPase component # Organism: Listeria innocua # 4 398 3 396 397 522 67.0 1e-148 MTEKLKVQNLTKIFGRRIQKAQELVKAGKSKAEILNSVGATVGVNNASFNVNDGEIFVIM GLSGSGKSTIIRMINRLIEPTFGKIFIDGQDLTKLDKKELLSVRRKKMSMVFQNFALFPN RTIIENTAYGLEIQGVDKDARHKKAHEALELVGLHGYDDQYPTQLSGGMQQRVGLARALA NNSEILLMDEAFSALDPLNRKDMQDELLDLQENLHKTIVFISHDLNEALRIGDRIMIMKD GEVVQIGTPEEILTQPADDYVERFIEDVDRTKVLTASNVMIRPNTVNIDKDGPRIAMRRM LENEISSVYVMNNKRQFIGIVDASHVMELIRKKITKLDSVVQRDVPTTSPDTPITTIMEK ISETSIPFAVVDDQRHLLGIIIRGAVLGAISGNEVNVND >gi|238617815|gb|GG669606.1| GENE 505 540929 - 541780 828 283 aa, chain + ## HITS:1 COG:lin1014 KEGG:ns NR:ns ## COG: lin1014 COG4176 # Protein_GI_number: 16800083 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, permease component # Organism: Listeria innocua # 1 277 1 277 282 375 76.0 1e-104 MTNIPQLPVSDWINHFVNWLEGFTGFFNGITNFIGGIINGFQWIFDLIPIWLFIVLVVGG TYWLNRKTKHWTLIGFEVIGLLYVWNQGYWRDMTQTLTLVLTSSLIALVIGVPIGIWMAK SKVVEIIVKPILDFMQTMPAFVYLIPAVAFFGIGMVPGVIASVIFAMPPTIRMTNLGIRQ VPEDLIEAADSYGSTSWQKLIKVQLPLAKSTLMAGVNQSMMLSLSMVVIASMIGAMGLGN KVYFAVGRNDAGSGFAAGLAIVILAIILDRITQAINRSKSPKA >gi|238617815|gb|GG669606.1| GENE 506 541794 - 542696 698 300 aa, chain + ## HITS:1 COG:lin1015 KEGG:ns NR:ns ## COG: lin1015 COG2113 # Protein_GI_number: 16800084 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, periplasmic components # Organism: Listeria innocua # 7 300 4 297 300 377 62.0 1e-104 MKKITNKLLIFISVFFSIILLSGCSSQMTKYNPKESVGKQINYTITGIEAGAGEMATTQK AMKAYGLDKGNWQLQTSSTAAMLSTLGKSIRYKQPIVITGWTPHWMFTKYKLKFLKDPKN IYGKTEDINTIVRKGLKKDKPEAYELLNRFHWRPEQMSSVMLRVNHGESPRKAAGDWIKQ NQAQVNSWTKGIKHVHGQKLKLTYVAWDSEIASTNVVANALRSIGYKVTIQAMELQPMWT SIATKAADGTVSAWLPNTQGLYYNDFKGRFDDLGENLHGAKVGLAVPTYMKNVNSISDLK >gi|238617815|gb|GG669606.1| GENE 507 543127 - 543795 667 222 aa, chain + ## HITS:1 COG:CAC1545 KEGG:ns NR:ns ## COG: CAC1545 COG0274 # Protein_GI_number: 15894823 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Clostridium acetobutylicum # 10 222 3 214 215 198 53.0 6e-51 MDTVLTTSKLAKYLDHTNLKPNATEADIKKTCEEAIKYNTASVCINSYWIPFVADQLKNS SVKPITVVGFPLGATNTETKVFEAVTAMDQGAEEIDMVLNIGQLIDGDRKNVTADILKVA EAVHAKGKLLKVILETSYLNDTQIVMGCHASMDAGADFVKTSTGFSSAGAQIDDVALMRK TVGSKLGVKASGGIHTRDEALAMINAGANRLGVSATIAILSE >gi|238617815|gb|GG669606.1| GENE 508 543824 - 545038 1140 404 aa, chain + ## HITS:1 COG:BH1530 KEGG:ns NR:ns ## COG: BH1530 COG1015 # Protein_GI_number: 15614093 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Bacillus halodurans # 1 397 1 393 393 440 54.0 1e-123 MDTKEYKRIFGIVLDSVGTGAAPDANKFDDVDSDTLGHVGEAYEGRLALPNLQKMGLSNL RGKAILGVPKVETPIGYYGVMQEISAGKDSMDGHWEMMGLPVSKPLDTFPNGFPSELIKK IETFSDRKIIGNRPESGTKIIAELGEHQMETGDLIVYTSGDSVLQIAAHEDVIPLKELYK ICEYARSLVNGPTYTIGRVIARPYVGPDKDHFTRTANRHDFTLAPIGQTDLDYLKSAQVH TIGIGKINDIFSGQGIDVGFHNESNMDGMDHVDKVMQEDFTGFCFTNLVDFDAMYGHRRN PIGFGQALMDFDKRLGTVLKNLKDDDLLILTADHGNDPGFKGTDHTREQVPLLAYSPSMK SNGSLGIRKTFADFGATVLDNFNVSGNAVGTSFLKELMNTEEIK >gi|238617815|gb|GG669606.1| GENE 509 545035 - 545751 816 238 aa, chain + ## HITS:1 COG:lin1970 KEGG:ns NR:ns ## COG: lin1970 COG0813 # Protein_GI_number: 16801036 # Func_class: F Nucleotide transport and metabolism # Function: Purine-nucleoside phosphorylase # Organism: Listeria innocua # 1 234 1 233 233 283 60.0 2e-76 MSTHIGAKAGEIASTVLMPGDPLRAKYIAETYLENPVCYSQVRNMLGYTGTYKGKKISVQ GSGMGIPSLAIYTTELIKEYGVKTIYRVGSCGGMSPDVKIRDVILGEAGTTDSSIIANTF GAGMYYSPIADFGLLDSAYHTAQEMGINTKVGNIFAADRFYNDELDLQKLIDYGVLATEM ETAGLYLLAAKHHIKALTILTVSDHLLTGEALSAKERETSFDEMAKLSLETAYRNIND >gi|238617815|gb|GG669606.1| GENE 510 545794 - 546741 709 315 aa, chain + ## HITS:1 COG:BS_deoR KEGG:ns NR:ns ## COG: BS_deoR COG2390 # Protein_GI_number: 16080994 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Bacillus subtilis # 6 314 2 311 313 280 44.0 4e-75 MAEIHDLEKLKQSLKVAEMYYEDDLSQTEISKSVGISRPTISRLLQYAKDNGLVKIQIVN PLVDAKILEKQLKQKYGVNIYVVSNNYGHSHSLQERVGKYAADFLAKVVRHGDVIGLGWG KTIHAITQQVEEQAVSDVRVVELKGSVSYSEEKTWAYESVNELARVYHTSPDYLPLPVIF DNKITKKMVERDRYIKRILDLGRSADIALFTVGTVRSDALIFQLGYFNDEEKKQLQQEAI GDVFSRFVDRNGEIVNQQIDDRTIGIKLDELRNKKYAILVATGKQKTAGVHAVLKAGYAN QVIIDQGLAQLLLDM >gi|238617815|gb|GG669606.1| GENE 511 546776 - 548092 1197 438 aa, chain + ## HITS:1 COG:SA1938 KEGG:ns NR:ns ## COG: SA1938 COG0213 # Protein_GI_number: 15927710 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine phosphorylase # Organism: Staphylococcus aureus N315 # 1 432 14 444 446 483 58.0 1e-136 MRMVDIIHKKRSGNVLSDQEIQFFVDGVVSGEIPDYQISALLMAIYFQGMTDSEQATLTM KMMTSGDHLDLSSIPGIKVDKHSTGGVGDKVSIPLAAVVAAMGIPIPMISGRGLGHTGGT LDKLEAIPGYQVEMSEAKFIEQIKRDKCAIIGATGNIAPADKKIYALRDVTDTVDSIPLI ASSIMSKKIASGTDALIIDVKTGAGAFMKTLDDSRVLAKALVSIGKGVGMQCMALITDMN QPLGRAIGNALEIQESIDVLKGKGPTDLEKLITVIGGYMAVMGGKAKTIDEGQKLAETVI HNGQGLKSFKRMIRDQGGDSKVVDEPTDILPQAAYQIDLPAKRTGIISKMVADEIGVASM LLGGGRQKANDKLDYSVGIYLNKKIGDPISEGESILTIHSNRKDVEDIKKILYDNIEISA TAKKPKLIYETVGWSVED >gi|238617815|gb|GG669606.1| GENE 512 548461 - 548907 359 148 aa, chain + ## HITS:1 COG:L160425 KEGG:ns NR:ns ## COG: L160425 COG0764 # Protein_GI_number: 15672547 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Lactococcus lactis # 4 147 7 149 151 163 57.0 1e-40 MSVLDASEIMDLIPNRYPILFMDKVDELNPGESIVCTKNVTINEEFFQGHFPGNPVMPGV LIIESLAQAASILILKTEKYQGKTAYLGSIDNAKFRKVVRPGDVLKLHVEMEKQRDNMGK VKCEAKVDEKVACSATLTFIVPDPKKKI >gi|238617815|gb|GG669606.1| GENE 513 548937 - 549407 458 156 aa, chain + ## HITS:1 COG:SP0416 KEGG:ns NR:ns ## COG: SP0416 COG1846 # Protein_GI_number: 15900335 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 12 153 2 143 144 116 42.0 1e-26 MNSTESDEIKADYNFISDALVDIYDQIMRIEESEIRKSRFKDITAKELHLVHTIGLHDRK TTSEVARILRLSKGTLTANLNNLERKGYITRITNQQDRRIINLALTSKGRLLYRAHYAFH RKLVEQCLKGFDGPAIKKMKQALINVEDFIGEVSAK >gi|238617815|gb|GG669606.1| GENE 514 549404 - 550387 687 327 aa, chain + ## HITS:1 COG:SP0417 KEGG:ns NR:ns ## COG: SP0417 COG0332 # Protein_GI_number: 15900336 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Streptococcus pneumoniae TIGR4 # 7 325 5 322 324 293 47.0 3e-79 MKFENFKILATASQVPTRVVDNDELSTMMDTSDDWIVQRTGIRRRHVAVDETTSSLCTSV AKQLLEKTGLKPSEIDLIIVATMSPDYLTPSVSAMVQGNLGADHAVAMDIDAACSGFVYG LNMVKQLLIAETPKNAILIGGETLSKLIDWQDRSTAVLFGDGAGGVLLKNTPKSEGAFIS ENLKTLGKLGRYLTAGKTGAPTPFMTKKDEFSPFFQMNGRRVYRFAVNNVPESINQALSE ASLTTDDIDHFVLHQANSRIVEKIAETLGVSMDKFPINIDEYGNTAAASEPILLDQLVTD GTIKRGDVVLLSGFGGGLTVGTMILKY >gi|238617815|gb|GG669606.1| GENE 515 550462 - 550701 336 79 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1670 NR:ns ## KEGG: Lbuc_1670 # Name: not_defined # Def: acyl carrier protein # Organism: L.buchneri # Pathway: not_defined # 1 79 1 79 79 75 86.0 5e-13 MTKEEVFNQVKDIIVDQLDVDADKIKENTNFKNDLDLDSLDIFEVVDKIEDTYDIEIETD DGMETVDDLVNYVLKQKAE >gi|238617815|gb|GG669606.1| GENE 516 550762 - 551631 808 289 aa, chain + ## HITS:1 COG:SPy1750 KEGG:ns NR:ns ## COG: SPy1750 COG0331 # Protein_GI_number: 15675599 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 278 18 300 312 189 38.0 7e-48 MGQDLYQQEDIYRQTIDEASDVLGLNLSDPSVMSDPQNTQVAIVAMSTGIDRILENEIGS PIGAAGLSLGEYSALIAARGIQFEDALPLVRDRSRYMDQAGKNHPGKMAAVLKANPDIVG EACRVGSQAGDIYPANFNTTSQIVIGGSKDGLAAATDYLHEHGIKRVVPLKMSVASHTPF MQEASDLLATRIKDIHFHDFKFPVISNTTKKPFEVASTQQTLVDQLVNPTHFVDCLQVLH GMDSQAMIEIGPGDTLMKFAAKTIANVKVYHVDSLETLNDVRSNMKLVK >gi|238617815|gb|GG669606.1| GENE 517 551631 - 552362 237 243 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 5 239 3 238 242 95 30 3e-18 MSEAKQVALVTGAGKGIGLAIAKRLLDEDFFVVLNTHHDLSDDAKAALEGKSGQYDHLIG DVSNEADAKSMIEAITEKHGRLDVLVNNAGITKDKLLSRLSLEDFKAVIDTNLVGAFNMT KFAMKVMQKARTGAIVNISSISGLHGNLGQANYSASKAGLVGLTKTAAREGALRNIRCNA VAPGMIRTDMTEKMSERRQKEFADQIPLKRFGEAKEIADTVAFLIANQYITGQVVTVDGG LTI >gi|238617815|gb|GG669606.1| GENE 518 552382 - 553611 1175 409 aa, chain + ## HITS:1 COG:L0186 KEGG:ns NR:ns ## COG: L0186 COG0304 # Protein_GI_number: 15672757 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Lactococcus lactis # 2 406 3 404 409 392 55.0 1e-109 MNRVVITGMGAVTPIGNDVESFLQNLFHSKVGINKITKFDSEPTGISVAGEVKDFEPLKR LDKKAAKRNDLFVNYALYSAHEAMEMAGLTEDNIKPEELGVIYGSGIGGLTTIEQQVIKM HDKGPKRVSPLFVPNSIVNMAAGDISITFNARNTSQAIVTACSTGTNAIGNAFEYIKEGK AEAMIAGGSEASVNEIGISGFAAITALSKTEDPMKASIPFDKDRNGFVMGEGAGTLILES YDHAKNRGANILAEIVGYGTTSDAYHMTAPDPDGNGAKRAMQMAIDEAGIDATQVDYINA HGTSTHANDSAESKAINEVFAKNDHVKVSSTKGMTGHALGAAGAIEAVAAIGAIRHNQMP VNVGVANQDEECTVDLVNESNKKAPVNYAISNSFGFGGHNAVIAFKGCE >gi|238617815|gb|GG669606.1| GENE 519 553615 - 554100 367 161 aa, chain + ## HITS:1 COG:BH2788 KEGG:ns NR:ns ## COG: BH2788 COG0511 # Protein_GI_number: 15615351 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Bacillus halodurans # 4 158 5 165 169 98 37.0 4e-21 MDEKEIERLLDKFDKSSLKNFELTQDDFKLALSKREGGEQVINDSQATELVGSDSTHHKQ NLQSQSAASNDLKSEEADSPDNVEEITAPLVGVIYFAPNPDKPAFKKQGDKVKKGDVVCV IEAMKMINEVKSDVSGTISNVLVKDGSMVEYGQPIFQVTKG >gi|238617815|gb|GG669606.1| GENE 520 554106 - 554522 335 138 aa, chain + ## HITS:1 COG:BH3735 KEGG:ns NR:ns ## COG: BH3735 COG0764 # Protein_GI_number: 15616297 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Bacillus halodurans # 4 138 6 140 140 107 36.0 4e-24 MKPEVNDVIPQRYPFQMIDRFLDVEAGKNATAVKLISINEWFFANQGAHQLTVPRPIMIE AMAQTGVAAILTLQQYHGKNVFFGGIKNAVFQDDFRPGDRLIFNVEMKKLRANIGLGHGT ITRDDEVICEADLIFAVE >gi|238617815|gb|GG669606.1| GENE 521 554565 - 555944 1009 459 aa, chain + ## HITS:1 COG:CAC3570 KEGG:ns NR:ns ## COG: CAC3570 COG0439 # Protein_GI_number: 15896804 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Clostridium acetobutylicum # 1 446 1 445 447 489 55.0 1e-138 MFKKVLVANRGEIAVQIIRALHDMDIEAVAVYSSADKDSLFVHLADEAICIGGPQPSDSY LNMTQIVSAATLTGCEAIHPGYGFLSENAEFAELCESCHIKFIGPSHQLISLMGDKANAR EAMKSAGVPVIPGSEGDVTSIDQAEKIAEKIGFPVLLKSAAGGGGKGIREVDRPDQLRDA FEQAQREAKASFNDDSMYVEKLIRNAKHVEMQVIADDFGNVVYLPERDCSLQRNHQKVIE ESPCVLISPAERKELGEIVAHATLKLGYTNTGTYEFLMDETHHFYFMEMNTRLQVEHTIT EEVTGIELVKGQLEVASGEKLSFSQADAAVKGHALECRLNAEDPENNFAPQPGKINHLFF PDGSLGVRIDSGVTNGSFISPFYDSMIAKLIVHLNDRDAVIAKMRRVLGELEITGVTTNQ AFLYELISTDRFKKGTYSTSFIENDVLANRRGLDVAKSV >gi|238617815|gb|GG669606.1| GENE 522 555925 - 556770 562 281 aa, chain + ## HITS:1 COG:L0180 KEGG:ns NR:ns ## COG: L0180 COG0777 # Protein_GI_number: 15672761 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Lactococcus lactis # 9 278 14 287 288 278 53.0 8e-75 MLQSRFKMPSREELKKRMDNIPDNIMKECPVCHATFFSMRAGKQRTCPNCGFGFRITAKR RAKITFDSFNEIDSDITVPKQYTDEKYMAKVAKAKKVTGIKESVLTGIGTLDKMQVAAGI MDPFFVMGSLGSATGEKITRLFEKATDENLPVVMFTASGGARMQEGIHSLMQMAKVSQAV EAHNKAGLLYIVVLCDPTTGGVTASFAMQGDIILAESHALVGFAGRRVIEQTIMKQPPKD FQKAETVLQHGFIDAIVPRSDLKQVLTKLLALHQKKEDANG >gi|238617815|gb|GG669606.1| GENE 523 556763 - 557533 726 256 aa, chain + ## HITS:1 COG:CAC3568 KEGG:ns NR:ns ## COG: CAC3568 COG0825 # Protein_GI_number: 15896802 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Clostridium acetobutylicum # 5 255 8 264 274 243 49.0 2e-64 MVKKTAYERVQAARNTQKISTDELIHGLISDFFELHGDRSDGDDQAVIGGVGLLNDEPLT VVGIRKGSDTEENIKRHFGSPEPEGYRKALRLMKQAEKFHRPILALVNTPGAWPDVDAEY HGVGSAIAQCLQVGMQLKVPYISMIVGEGGSGGAIALACGDKVFMFEDSIYSVLSPEGYA SIMWKDSSKVAQAAEELKLTPDRLLESGIIDQIIHEYRPGDDLKPLRDFLYNQFNELKNL PTDELLRQRRERYRKF >gi|238617815|gb|GG669606.1| GENE 524 557560 - 558318 794 252 aa, chain + ## HITS:1 COG:L161132 KEGG:ns NR:ns ## COG: L161132 COG0623 # Protein_GI_number: 15672548 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Lactococcus lactis # 4 251 2 249 250 283 58.0 3e-76 MSGFLEGKTIVIMGVANKRSIAWGCTQAILEQGANVILTYQNDRIKKSLQRFVPETAELI ECDVSEDDNIKQTFEKIGQKHGKIDGVIHAIAYADKETLTSGLVNTTRDGYDLAQNISAY SLIAVSRYAQPILNNPGSILTLTYFGSTRAIPNYNMMGVAKAALESSVRYLASDLGESGV RVNAISAGAVKTLAVTGIKHHSELLKESESRTVDQKSVTTSEIGNVAAFLMSDLSTGMTG DVVYVDKGVHLI >gi|238617815|gb|GG669606.1| GENE 525 558629 - 559621 556 330 aa, chain + ## HITS:1 COG:L0191_2 KEGG:ns NR:ns ## COG: L0191_2 COG0340 # Protein_GI_number: 15673762 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Lactococcus lactis # 82 321 1 240 242 187 39.0 2e-47 MADHQSKILYELLSSNGRYISGNELAKRLNISRPAVYNNILKLERGGHRITTKKGLGYCY QYSKCFDAQVIDHYRTTTFPVEVHAFKKITSTNDYAKAFSSHVTVERPHVFVTDTQTHGR GRLGRHFYSPSKTGIYMSILVPLQSRRTIHSGLITTGTAVCVVRALKQFFPQVDFRVKWV NDILAHHKKCGGILTETISSLEDGIHENVIVGIGLNISSQGFPDEIIHKAGSVVEKSDVD RNKIVAGIIDNFFYMYQTYRTGSFLSEYAALSETLGQTVEIVMGNQTVTGTAMRFNREGA LIIRKKDGEMVTISSGEVKKVFLPENPYHG >gi|238617815|gb|GG669606.1| GENE 526 559706 - 560242 532 178 aa, chain + ## HITS:1 COG:L24031 KEGG:ns NR:ns ## COG: L24031 COG1268 # Protein_GI_number: 15673763 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 2 171 6 178 189 145 50.0 3e-35 MKIREITQIALVTAVIIVLGLIPPIPLGFIPVPIVLQNLGIMIAGIVLGPKRGTVSVALF LFLALIGFPVLSGGQAGPAVFVGPTGGYLVGWLLTPALVWSTMSFKFMKQSWEKMAGAWI GAVLIVDIIGSLWLTIGSGMPLISALLSNLVFIPGDTLKVVVACLVGQRIRIPKINRV >gi|238617815|gb|GG669606.1| GENE 527 560371 - 561726 1200 451 aa, chain - ## HITS:1 COG:BS_yojA KEGG:ns NR:ns ## COG: BS_yojA COG2610 # Protein_GI_number: 16079010 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Bacillus subtilis # 1 448 1 442 444 435 58.0 1e-122 MQLIALLAGIIILLVLIIKFKINTFVSLVLTAAITAIFLGMPLGKIADSITNGIGSQLGE LSMVFGFGAMLGRLVSDSGGAYMIASTLIKRFGKQRLQIAVMIASFILGIALFFEVGMVL LVPIVFAIAVEAGVPILYLGIPMAAALSVTHGFLPPHPAPVAIAQVLGANDGRVLLFGFI IAIIAAYIAGPLFSKLARKFAPDAFNRKGNLSSIGEVKEFSPEESPSFGLSVLTALFPVI LLAIATIYKMTVNGGAEPKNPSLLDSIIEFIGSPSIAMLISLFFAMWTMGWARKRTTAQI MESLENAVKSIAMLLLVIGGGGAFKQVLIDGGVGKEVAKIFLGSSISPLILGWLIAVVLR IALGSATVASLTAAGIVAPLMAQSGVDPALMVLAIGAGSLAASHVNDAGFWMFREYFDLT IKQTLETWTVLESIISVVGIVLVMIMNLFFH >gi|238617815|gb|GG669606.1| GENE 528 561794 - 563350 1565 518 aa, chain - ## HITS:1 COG:SA2294 KEGG:ns NR:ns ## COG: SA2294 COG1070 # Protein_GI_number: 15928085 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Staphylococcus aureus N315 # 1 513 1 514 517 580 53.0 1e-165 MAYTLGVDIGTTSVKTVLYDTNGKVHGYSNNGYPLYQDTPDMAEEDPEEIFSAMQDGITE LIRKANLKPGELKGVALSCAMHSLILLDSDYKPLTRAITWGDNRAVKYADELKASPQGME IYQHTGTPIHPMTPLTKLIWLRNDHPDLFKKARWFVGIKEYILYRLFGTLKEDYSIANAT GMFNIYNMDWDNQALKLAGVTRNQLPELVDTTYQLKGMHDQYAKVLGIDPDTPFIIGASD GPLANLGVNAIQPGVVAVTIGTSGAVRVVTDKPHTDPKARVFCYYLAKNMWVIGGPVNNG GVVFRWVRDQLCAPEKVTAEQMHIDPYDLLTQIAAKIPAGSDGLLFFPFLGGERAPIWDA NARGSFFGLNRTHTRAHMIRAVLEGIVYNLYTVMLALEEVVGRPTSIQANGGFARSALWR QMLTDIFEQDVAIPESFESTALGAATLGMYSLGLIDSLTDVSNFVGTTVVHHPDPKNFPA YRELIPIYIRLSRSLEPEYKNIADYQRRHEHEDDFSGK >gi|238617815|gb|GG669606.1| GENE 529 563667 - 564518 579 283 aa, chain + ## HITS:1 COG:L54944 KEGG:ns NR:ns ## COG: L54944 COG1737 # Protein_GI_number: 15674168 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 5 282 6 282 282 193 36.0 4e-49 MSSPVQMLKQSFDNLSRTNKKIAKYVIDNPQAASEANIEDLAAVTETSTASVSRLVKTLG YSNFREFTLSLAYTQLRPQNLPIFKDIDANDTLSTIADKIFTSSQRALQDTREGIDENEF ARSVLRIIHCRRLGFFGLGGSSVAALDGYHKFLRTSIDCFYYPDFDVQLMQAVKLGEDDC AIVVSHSGKNRQTIKIAETLKRRKVPVIAITSYQDSPLVGHSDITFISSSDESNYRSEGM YSLLAQLTIIDTLFMMATVRMGPATEDTIRSVQNIIESTRGSS >gi|238617815|gb|GG669606.1| GENE 530 564598 - 565359 472 253 aa, chain + ## HITS:1 COG:mlr0125 KEGG:ns NR:ns ## COG: mlr0125 COG3757 # Protein_GI_number: 13470422 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Mesorhizobium loti # 54 247 105 301 317 78 27.0 1e-14 MRRRDVQPIYAETYRRRVRTRKVIFGVFLLIVLLITAFSVWRWHAKQELKRYPIRGVSIN QDNGYIDFESLKNNGVKFVYLKATQGATYTDDSFLSNFQRSQGSQLPVGVYHYFSFSSSP KAQFKNFVRQVKTNTGSLPICISIQYYGGYNDGSVHWKSTRENVRTLMSDIRHYYQRPVV ISTSQEIIQRLKIEATNAHQFWTTDGQLGKPNGDATFIQVTQKQDFRLDRQVVFLPMSVF NGDARQWARYLES >gi|238617815|gb|GG669606.1| GENE 531 565407 - 565772 240 121 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1654 NR:ns ## KEGG: Lbuc_1654 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 4 114 1 112 122 140 63.0 2e-32 MFLLRKRSIAIFLISFFIGLFHAPKRKKQIDHIDPLFFAGTWFFKDYRGHNHKIEIGPDL KLSIDGEDLSAKVSSVKKYEVSYVDRYGYTLEIRANEARPTKFYDESDNNTYDLYPNMET L >gi|238617815|gb|GG669606.1| GENE 532 565898 - 566899 905 333 aa, chain + ## HITS:1 COG:L109882 KEGG:ns NR:ns ## COG: L109882 COG0673 # Protein_GI_number: 15673643 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Lactococcus lactis # 1 333 1 326 326 241 42.0 2e-63 MIKLGIIGTNWITQQFVEAVKLTGKYEFTTVYSRHLETATEFATKNGAENTFDDLNAFFA SDSFDTVYIASPNSLHFEQAKQAIENGKNIIVEKPAFMNQKQMAEIQHLLDKHPEVLYFE AARNIHTPNFHAIEKKLSELNVVSGAEFTYSKYSSRYDHVLAGEIPNVFSPKFGGGALQD LGVYTVYDAVTLFGMPEEVSYYPQLIRTGVDGKGTAVLSYPEYTVILNFSKMSNSHMTSE IYGLKDLIELDDAGEIQHVDYIDPDGKRQTLGDYDGSNPMIPEANDFARVINEPNNDQNM KDYAYWRQLSVYVNKILFNLRQDAHISFVGEEK >gi|238617815|gb|GG669606.1| GENE 533 566917 - 568212 969 431 aa, chain + ## HITS:1 COG:lin1833 KEGG:ns NR:ns ## COG: lin1833 COG0513 # Protein_GI_number: 16800900 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 13 420 18 419 442 235 37.0 1e-61 MISEFEKHAEKLGYQQWTAIQKAVYQPLKDGQSVVGIAPTGSGKTVAFTLPLLESIKSID GTKLIVVEPSAELAMQTQKTMLEWGSLTGLTVQGAVGGANISRQIERLKEHPNVIVGTTG RLMNLIELGKLKLDDIQTIVIDEADNLLSEDTLDSIRELVDQAPDDTQLGFFSATQNDIL KHVNRWFNQDMQIFDVTDIDDTQGIVKHGLLQVSNKKKEQMLLRFLHMKDFKALVFFDQL NTLQKVSGFLIHRHVREAAKLTSEQNQTSRQNALRDFRKGKVRLLLTTDVAARGIDIPKL PAVINFDLPRDARTYTHRIGRTGRMHQNGLVINMGDDHDLRHLKQLVRDQFDLSNVYFSG NQLSDTKPERTVTDLEKDDKNDEGPTQGLEKVANQKSQKKRPVISNPAPKPHHKKNKHTN RKGMRHKRTTK >gi|238617815|gb|GG669606.1| GENE 534 568394 - 569665 933 423 aa, chain - ## HITS:1 COG:no KEGG:OEOE_0742 NR:ns ## KEGG: OEOE_0742 # Name: not_defined # Def: hypothetical protein # Organism: O.oeni # Pathway: not_defined # 15 417 2 403 407 608 73.0 1e-172 MNITYLTDLFDQYTQKKGLLYQTWFIHSENRLKAFNQVRKGVKQIITDIRRHQFPRDLHG SSLETVMNIIIAQQEIFKGAKHAFMWKPKLRIPDIYENRQNQLDFAEMLDQVINAKQEVK MLLAVNNLAEKKIKGLGPAVANILYFLEPTIFCPFNTSIVRGYNDLTHSKIRLGKWNDYF KLRDGIIELNEAGGLFSKDLGAVSAFLFDIGKLNYIIPETSEAYIQITESHTMKKLKSAE KTTELKSLHYKVQLLLADIGNSIGYQSWIASNDHNRTVNGKRLGDYSLPSLPKTMTQLPP TLQETVRLIDVIWFTKSGEPIATFEVEKSTSIMSGMNRMDDLYEINKGDMMLYIVSPDKR EQEVKAQFNRPHYMHNHNLHDHIRYILFADLIKSYQSLKLFGHDYAILGPISHFPDGTIA DQR >gi|238617815|gb|GG669606.1| GENE 535 569844 - 569996 121 50 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227510009|ref|ZP_03940058.1| ## NR: gi|227510009|ref|ZP_03940058.1| hypothetical protein HMPREF0496_2172 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_2172 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 50 17 66 66 90 100.0 3e-17 MRNPNLNRQTLRKRKAEFSKGLYTTADGFKLLGMAVILIAILVACANYLM >gi|238617815|gb|GG669606.1| GENE 536 570028 - 570447 337 139 aa, chain - ## HITS:1 COG:lin2694 KEGG:ns NR:ns ## COG: lin2694 COG2246 # Protein_GI_number: 16801755 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 138 8 145 145 82 38.0 2e-16 MKKIAAVYDKYREVISYLFWGVVTTVVNLGVFEGFHLLTNWNYMVNNTIAWFISVLVAYL SNRAYVFHSKTTGARAYLGEMASFFGGRLLVLILEQGILFVGITLMSGNQFIVKIIDNVI VVIINYFWSKWAVFRDQKK >gi|238617815|gb|GG669606.1| GENE 537 570455 - 571402 590 315 aa, chain - ## HITS:1 COG:SP1606 KEGG:ns NR:ns ## COG: SP1606 COG0463 # Protein_GI_number: 15901446 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 4 314 2 305 320 317 51.0 2e-86 MKTISLIVPCYNEEPTVELFFNTTEKVFKQLNETHEDQYRPDYLFVNDGSADKTLEIMRQ LHEKHPDTVHYLSFSRNFGKESALAAGLSNAKGDYIAVMDVDLQDPPELLLQMVDILEDP KQDYEVVGCVQTSRKQNPIRGFLSASFYKIINKMSRVQLKQNVRDYRLMTRKYVDALLEL PEYNRFSKGMFSWVGFKTKYLKYEGVPRAAGTSSWSIFQLFEYSLEAVVDFSDVPLKMAT LVGGLICFLSIIGLVFVVIRALFFGGSVNGWASLVSIILFLSGVQLFCLGIVGKYIGKIY LETKHRPKFIIAERK >gi|238617815|gb|GG669606.1| GENE 538 571829 - 572926 903 365 aa, chain + ## HITS:1 COG:BS_yvyH KEGG:ns NR:ns ## COG: BS_yvyH COG0381 # Protein_GI_number: 16080619 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Bacillus subtilis # 1 363 7 367 380 447 62.0 1e-125 MTIFGTRPEAIKMAPIILMMQHHLDQFQPITVVTAQHREMLDQVLDVFHIKPDYDLNIMK QGQTLSDITTRVLTLLDPIVEKVVPDIILVHGDTTTTFAASVSAFYHQVEIGHVEAGLRT WNKLSPYPEEMNRQLTDVLADLYFAPTKLSRDNLLKENHPEKNIFVTGNTAIDALKQTVS ADYQHSVLDELKSDSKMVLLTMHRRENQGEPMRRTFKAISDVLKTHPNVEVVYPVHLSPA VQKVAHDVFDGNPQVHLIAPLDVLDFHNMAARSYFIMSDSGGVQEEAPSLEKPVLVLRDT TERPEGIEAGTLKLVGTDPAVVKENMTQLLDDQVEYQKMAEAKNPYGDGKASNRILKAIL ARFSK >gi|238617815|gb|GG669606.1| GENE 539 572947 - 573846 580 299 aa, chain + ## HITS:1 COG:lin1818 KEGG:ns NR:ns ## COG: lin1818 COG1295 # Protein_GI_number: 16800885 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 11 271 16 276 289 154 32.0 1e-37 MIKSIYLKTKQFIQTLVSHYSQGDVSDSAAVLAFYSLMSIFPILFIGGSILNLFHIHTGD IMEYVRPIFPDRIYVMLEPVIDSTLRSGGTSQLSIGLIVTIWSASRAIAAFQRSINKAYG VAEDQTAISNRILSFLWMLLLIVVVVAVMIAFALSQFVFSWLSPILHIPQSIISFVSTVK WPSTMILVWLLLSVLFYIVPTAKVKFRYVWFGALFTTLGLMVLAQAFSIYVTFFAHRVDA YKTIGTFIVLMFWLDFSGLIMLLGGVINATIQELRMGKIQEQTDAIESVLRRATKRKRK >gi|238617815|gb|GG669606.1| GENE 540 573980 - 574435 539 151 aa, chain - ## HITS:1 COG:SPy0721 KEGG:ns NR:ns ## COG: SPy0721 COG0716 # Protein_GI_number: 15674777 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pyogenes M1 GAS # 1 150 1 149 149 122 49.0 2e-28 MITAHVVYATITGNNEDIADIVTEHLEDAGVKVTETEISQTDPSVFEDVNICVVCPYTYD EGALPEEGLDFYEDLSDEKLSGKVFGVAGSGDTFYEEYYNVSVDKFEEAFKKTGATIGAD SVKINLEPDEDDIKKLDAFTEKLIEKAKSLQ >gi|238617815|gb|GG669606.1| GENE 541 574537 - 575337 837 266 aa, chain + ## HITS:1 COG:BS_yfhG KEGG:ns NR:ns ## COG: BS_yfhG COG2137 # Protein_GI_number: 16077919 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 5 262 4 261 264 127 34.0 2e-29 MTQSITKIEAQKRKGRFNVYVDGQYAFPISEDVFIKYRLFKGMELDKQLIETLKNADNIS KLHTRALNYLAHNLRTEHEVKSKLLEITDNPDAIEQVISQLKDQQLVNDRKYADSYVRTV VRQKKNGPNWIRQKLFEKKVPKSLIDASLGDFFPEDQMIEIGVTVADNQLRHHQNESEKM AINKIKETLVRRGFGFDIIPDIMEQVDTSGLASHDSDIIGGVAEKYWHKYAKLEKYKQLQ KTKQALFRKGFSMDDIEAVLEDLAES >gi|238617815|gb|GG669606.1| GENE 542 575430 - 575981 336 183 aa, chain + ## HITS:1 COG:SPy1608 KEGG:ns NR:ns ## COG: SPy1608 COG3557 # Protein_GI_number: 15675490 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Uncharacterized domain/protein associated with RNAses G and E # Organism: Streptococcus pyogenes M1 GAS # 6 181 2 177 177 270 72.0 1e-72 MPRGQQLPKEGDFIAIQSYKHDGSLHRVWRDTMVLKNGENSLIGCNNHTLVTEDDGRHWV TREPALVYFHKHYWFNVVAMIRDDGIAYYCNLASPYALDKEALKYIDYDLDVKVFPDGRR KLLDVDEYLAFSKRWDYGPEIDHILKKNVRIIVDWINNEKGPFSKEFIAIWYERYLALSR QRK >gi|238617815|gb|GG669606.1| GENE 543 576031 - 576219 112 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAMGENIKLICVHPQMIPTTSKISKDQNMRGEFFNLSNTESIPLSKFSWLRQLYHNFSTL KK >gi|238617815|gb|GG669606.1| GENE 544 576134 - 577213 913 359 aa, chain + ## HITS:1 COG:lin0908 KEGG:ns NR:ns ## COG: lin0908 COG0628 # Protein_GI_number: 16799980 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 2 358 13 359 378 254 44.0 2e-67 MFWSLEILLVVGIIWGCTQISFMFSPIAIFFSTIFIPVLLAGILYYMLNPIVNLLTKIPI GRKRVSRTWAVTLVFLLLLGIIILLATVFIPKVLNQLMNLANNVPGAINDGQNLLEKALK EMNSQQLLKKIDFTQLTQKFSTNITDYANSFFNGLTSGIGGVISAAANAVIIAVTVPVVL FYMLKDGYRLAPNIKSFLPERHREQTMDLLSAMNRTISKYISGQMIECLFVGTFTAIGYL VIGLPYALLLGVIAGICNIIPYLGPYIGIAPALIVSFSHGGWLSMVYNIVIVIIVQQIDG NLVYPNVIGKSLQIHPLTIIIILLAAGNIAGLMGMILAVPLYAIVKVIVVHLYNIYQLD >gi|238617815|gb|GG669606.1| GENE 545 577322 - 577732 395 136 aa, chain + ## HITS:1 COG:lin1076 KEGG:ns NR:ns ## COG: lin1076 COG0615 # Protein_GI_number: 16800145 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Listeria innocua # 1 126 1 126 127 189 74.0 1e-48 MKKVITYGTFDLLHKGHVRLLKRAKALGDHLTVCLSSDEFNAEKGKKAYTSYEDRKYILE AIKYVDEVIPETNWDQKIHDVQDRDIDVFVMGDDWKGKFDFLKDYCEVVYLPRTEGISTT KIKEDLGLTDSKDWQA >gi|238617815|gb|GG669606.1| GENE 546 577834 - 578682 662 282 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1639 NR:ns ## KEGG: Lbuc_1639 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 282 1 285 285 342 61.0 1e-92 MKRAIFLVTSIQGIRKPTFLKQLLALINDHYEVAILFAMTNFDEVWQAKREFNTINEREH LPSVRIITLGDVYADHSGILLKDNDYLNIDLTKFTSYESHTNRLKVTRYVDDTGNIIAET LFGDNQVRLHTILFDKNSRIIQINNYNQQDQLYGIEKCNDDFVDESLLLNTKSELVFRFT NYVMSQKINYGVAETSLIPVPASLSEISSNKKEDPLTHYEAKGESIVTKATSYSDYHRYD DINAFYHQVLLNMNIDDARIYLDINNIIDASKYLPGKQIFNY >gi|238617815|gb|GG669606.1| GENE 547 578696 - 580720 1265 674 aa, chain + ## HITS:1 COG:BS_tagF_2 KEGG:ns NR:ns ## COG: BS_tagF_2 COG1887 # Protein_GI_number: 16080625 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Bacillus subtilis # 298 666 15 383 387 369 47.0 1e-102 MRAILSGVHQKKGLQVLEFELLDVATSLEHAYMLFVEKNSLASVMKPITKVLNHNIIRVK IDAQDFHFEAADQTEFEWQIFLVDNATNFKNVVQIESEYLSDRHQLELTSYYQFNSDAQG MALFNIRTHQSDQDFMINSVNLTDTDLEITGYNKINGTPIKNQRIILQNRLNDGKLDYPV SQTMFAGMFKVGIPLTDIPKDSVGELSIKYELAGQEINQRLIISKSLSGQSVEADLPGNR VITIEKRFDNGLLVKEFQGASLLEKVAAAGGKAHGLLEVCRLVQDKLNLARMRFLFKAGH SPYENTTIIFESFGGRQVSDSPYAIYRLFQTLYPGITMIWSIDRSQKAFCKENQIAYVIR RTSKWVRLLEKSQFWISNARFPSWVKKPSYVTYIQTWHGTPLKKLGLDIENVSMPGTTTA KYHKNFVREANRWDALVSPNDYSTQIFRSAFGFNNQILKVGYPRNDELINTMPDEITEIK NKLGIPLDKKVVMYAPTYRDNQFAEKGKYTFELPFSLDDFRKSFGDDTVLILRMHYLISN ALDISDYSDFVYDFSNYPNISDLYLASDLLITDYSSVFFDYAYLKRPILFYPYDYHLYKE ELRGFYLNYERDLPGKIAHNSQELLAEIHHALGHPDMSANQQFMNFYNRFCAINDGLSSL KVVNYVMHQIESGV >gi|238617815|gb|GG669606.1| GENE 548 580819 - 582393 1219 524 aa, chain + ## HITS:1 COG:SP0439 KEGG:ns NR:ns ## COG: SP0439 COG4108 # Protein_GI_number: 15900357 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Streptococcus pneumoniae TIGR4 # 6 524 3 514 514 721 67.0 0 MSNQKLQTRDSTRRTFAIISHPDAGKTTITEQLLLFGGVVRQAGTVKARKTGNFAKSDWM EIEQKRGISVTSSVMQFDYGGKRINILDTPGHADFSEDTYRTLMAVDSAVMVIDSAKGIE PQTKKLFQICKMRGIPIFTFMNKLDRDGRDPMDLIDELETVLGVQAYPMNWPIGMGKTLE GIFDRYNHRVELYTHAQKSQMVQLDDNNNPINNAELADDDQFQETKDSIDLLDMAGNKFD EDKIATGDLTPVFFGSALVNFGVKTFFDAYLKYAPAPSAHKTQEGDTIQPDADRFSGFVF KIQANMNPNHRDRIAFVRICSGEFEKGMDVNLYRTQKKLRLSNVTEFMANTRENVNTAVA GDIIGLYDTGNFQIGDTIYTGKAPVEFEKLPQFTPELFVRVSAKNVMKQKSFHKGIDQLV QEGAVQLYTSYTTNDYILGAVGQLQFEVFQFRMKNEYNSDVNMEPMGHKIARWIDPDQLD EKMSSSRNLLVKDRTGQPLFLFENTFAMRWFKDKYPDVTLTAKL >gi|238617815|gb|GG669606.1| GENE 549 582417 - 583844 1028 475 aa, chain + ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 8 472 10 473 474 363 42.0 1e-100 MASKHLSACTTVLVGKKASIDGSTMIARNDDTFLPLTPQRFYVEPAVSNRHETWKSNQNG FTAPLPEKGYRYSLTPNVEVDKEGVYAESGFNEKNVAMSATESVYGNERALAFDPLVEDG LAEDSLQSMVLPYIDSARDGVRYLGDLIKKYGSPEGNGVLFSDKDEVWYMEIVTGHHWVA QRIPDDAYAIAANQVAIQQVDFDDPDNFMYSEGIQAFVEKYHLNTNQSGFDFRRIFGTDN EKDRHYNTPRVWFGQRYLNPEIDQEPTSSDLPFICRTNKKISVEDVEYILSSHYNETEYD PLSRGNEGTKTLFRPISMNRTQNSHVLQIRNDVTNDCAAIMWLNFGVPAFSPYVPFFGNA NDTDESYENTPVRCDDKSAYWMYRKLSVLVESHYSEFIQDDVDFLTDVKEKLRRHVQATI DEAKGLSDNELTNYLTEQNHQAVKMMRIATEDMIHRLFEKGLNLSKLTFNMDKNL >gi|238617815|gb|GG669606.1| GENE 550 583944 - 585077 616 377 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1634 NR:ns ## KEGG: Lbuc_1634 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 6 375 1 376 377 367 51.0 1e-100 MGAILMTFFSWIKKQLQMITPTIRSDRRKRRSRHPDYHQKKKLTPENNFESDQTDTQQTN QSKTNDTLKNEDDSLNTFQNTTSFEMQSQVIFTYLDENDRQISSSDIIRGIVGENIQFKL PDFSDYYLTSIENFTHKFEKSDQEVTLRFALKNGLPIMIYCLDTDTGQILKSVQIISGKL GQSYTVNAPKINGFRVISSTGPTFGHFDHQTQGVIFAYRRTHWETVQPVEYFVKLKDAHD VYDSPQGRSLKTGLPARIIIKIFARIDLSDKSSWLNIGGFEWIKNSNLEPSDPPIHNLID TITKTSRNPARLAGTIDYVPNKAIAVFDKPYGNKINALIHGSRVSISATIVDDQNLIWYE LNGNGVVPKMYVIVDRS >gi|238617815|gb|GG669606.1| GENE 551 585226 - 587460 1606 744 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 68 704 128 785 815 623 49 1e-177 MLCQNCHKNPATIHLYTNVNGQKQTINLCQNCYQLLSNKQRNTGGAQDMAQDPFGFGGLD DIFRAMQGGNMDPNQQQQIPPTQPQGPGNGRGNGNRQGGNTLLGQYGINMTQMAKDGKID PVIGRDNEINRVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQEIVSGNVPSKLQNKQII RLDVVSLVQGTGIRGQFEQRMQQLIKEVQDNPDIILFIDEIHEIVGAGNAEGGMDAGNVL KPALARGEFQLIGATTLKEYRDIEKDSALARRLQPVTVDEPSPEESVKILKGIQKRYEDY HHVKYTDDAIKAAVKLSDRYIQDRFLPDKAIDLLDEAGSRKNLTINAVDPHTVEEKIQNA EKQKQAALKSEDYEKAAYYRDQVSKLEKNAKSDNIDSADTPQVTAEDMEKIVEEKTEIPV GELQAKEQTQLKNLGPNLEKNVIGQNEAVEKVARAIRRNRVGFNGTGRPIGSFLFIGPTG VGKTELAKQLAYELFGSKDAMIRFDMSEYMEPHSVAKLIGSPPGYVGYEEAGQLTEQVRR HPYSLILLDEVEKAHPDVLHMFLQILDDGRLTDSQGRTVSFKDTIIIMTSNAGQGDSEAN VGFGAAATGKTHSIIDKLTNYFKPELLNRFDDIVEFNPLTKENLQKIVGLMIDEVNGMLA QQGLFINVTDKAKAKLVDLGYNPAMGARPLRRVIQEQIEDKVADFYLDHEGSARLTADVN SDGNITITTDSSQTNPSVKSDKKK >gi|238617815|gb|GG669606.1| GENE 552 587890 - 588105 188 71 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1632 NR:ns ## KEGG: Lbuc_1632 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 7 71 5 69 69 84 67.0 1e-15 MADDTGNADYEKLLNQLETGEIEKIIVHPEEFMTFQTAYMNFDKRKRIIGTADQGGVITY VFERDEQEKNS >gi|238617815|gb|GG669606.1| GENE 553 588277 - 588543 326 88 aa, chain + ## HITS:1 COG:SA0934 KEGG:ns NR:ns ## COG: SA0934 COG1925 # Protein_GI_number: 15926669 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Staphylococcus aureus N315 # 1 87 1 87 88 103 68.0 8e-23 MEKRQYNITAETGIHARPATLLVQTASKFNSDITLEYQEKSVNLKSIMGVMSLGVGQSAS VTITADGDDEKDALDAITETMKTEGLTD >gi|238617815|gb|GG669606.1| GENE 554 588548 - 590269 1328 573 aa, chain + ## HITS:1 COG:lin1002 KEGG:ns NR:ns ## COG: lin1002 COG1080 # Protein_GI_number: 16800071 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Listeria innocua # 3 568 4 568 572 631 56.0 1e-180 MTKFKGIAASDGIAIASAFRLTEPDLSFDKKTIKNPDTEIDRLNQAIEISKRELRTIQQR TFKDLGRHEAEVFKAHIAILSDPELLKRIESMIKTQHVNAEYALKDVSDSYVKIFNSMTD NDYIKQRSTDINDVTKRVLSHLLGVPLTDPALIDHKVIIIAHDLTPSDTAQFVPNYVKGI VSDMGGRTSHSAIMSRTMEIPAVVGFQGSLADIKDGDQVIVDGLTGNVIVKPSNDEKNEY VEKIKKYRQANSQLTSFRNVATTSSDGKHPIIAANIGTLDDLQAAIDNGAEGIGLFRTEF LYMDSDELPSEQNQFDIYKTVVQRMAGKPVIFRTADIGGDKELPYLHTPHEANPFLGYRA IRMSLDQPDIFRTQLRALIRASAYGNLSIMFPMIATITEFEHAKRIFEDERAKLIAQDVA VGDIRVGIMVEVPAAALLADQFANVVDFMSIGTNDLIQYVMAADRGNRRISYLYQPYNPS VLRLIKSVIDACHDNGTPAYMCGEMAGDQKAIPILVGMGLNEFSMSATSILKSRALIKEL DSREMVTLANKTVSLASTSQQVLKYVHQALGKS >gi|238617815|gb|GG669606.1| GENE 555 590524 - 591711 965 395 aa, chain + ## HITS:1 COG:SPy0516 KEGG:ns NR:ns ## COG: SPy0516 COG0438 # Protein_GI_number: 15674620 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 376 1 376 444 335 46.0 7e-92 MNIGIFTDTYFPQVSGVATSIKTLKNELEREGNQVYIFTTTDPHVDKDTYERNIFRFSSI PFISFTDRRIAVRGLFQAYEIAKELNLDIVHTQTEFSMGMIGKFVAKNLNIPCVHTYHTM YEDYLHYVANGKLLKPVHVKEGTLAFCYHLAGVITPSDRVLDKLTEYGVKCQMRIIPTGI DVGMYAKSIDTDIREKYHISKDTPVMLSISRLAYEKNISEIVDLLPSIIEQVPKVILMIV GDGPAKEDLMKQVTQLGLSKHVIFTGEVSNDHVNAFYRTANVFVSTSNSESQGLTYIEAM AAGLPVVVTSSDYTDGLLSNESLGQTFKKSDEFTEIVIRYLTNPVDKDNSKAKKILDQKL TEISAETFGKRVVDFYHSVTVEQQLQKDPTATNIE >gi|238617815|gb|GG669606.1| GENE 556 591732 - 592754 898 340 aa, chain + ## HITS:1 COG:lin2699 KEGG:ns NR:ns ## COG: lin2699 COG0438 # Protein_GI_number: 16801760 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Listeria innocua # 1 333 1 334 341 379 54.0 1e-105 MLKINMFSTATKVKGQGVGSAYSELINMLEKHFPREFDIKINNYAQSDISHYHTINPTFF LSTFFKKRGRKIGYVHFLPETLEGSLKIPWPIKGIVYRYVIAFYKRMDHIVVVNPSFIPK LEKYGIKGNKITYIPNFVNRQEFHPASKQTKRDLRAKRGYDQNRFTVLGSGQIQTRKGVL DFVQLAKENPKVQFIWTGGFSFGKMTEGYADLEKIVKDPPNNLSFPGIIDRHKMVDYYNM ADLFILPSYNELFPMSVLEAFSTETPVMLRDLDLYKSIIDGYYLGAGDVSEMNSELGKLI QNPDELMKLTEKAKEASERYSESHLAQIWHDFYNQQAGKG >gi|238617815|gb|GG669606.1| GENE 557 592757 - 593797 662 346 aa, chain + ## HITS:1 COG:lin2698 KEGG:ns NR:ns ## COG: lin2698 COG0392 # Protein_GI_number: 16801759 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 2 331 5 333 357 229 40.0 9e-60 MSRKNKFTFMLMVLIGIVIIGYSMRDVKLSVLIHDFFTLDPLWLIVAFACICIYLLVEAV ITKVLVSNRVSTFTFKDALRVPLVEQLFNGITPFSSGGQPGQLVVMLQTGIDGGRASSVL LMKFVVYQAMIVVNFFISLLIGFHYVATKMQYLSLFVLFGFLIHFFVIVALLMIMYWPSF TKKVTRILFHPVKWFVKDEKYDSMRVTLYEKIDNLYEESIRIGRQPKLMIKVVLLTLVQL AFYYLIPYFIMLALGYYNVNVFMVTSLHIMIVMIISLFPIPGGSGGAEFSFESLFQSYIS SNSKLVLAMILWRILTYYFGMVVGAIALLIKPDKVNDSHKVVRKKE >gi|238617815|gb|GG669606.1| GENE 558 593979 - 596039 1426 686 aa, chain + ## HITS:1 COG:lin0927 KEGG:ns NR:ns ## COG: lin0927 COG1368 # Protein_GI_number: 16799998 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Listeria innocua # 1 656 1 653 653 613 49.0 1e-175 MSTKKSRILNFFNTRLGFFFLVVILFCVKTYIIYQTKFTLGAKGGMQQFLLVVNPIPAAL LTLGIALYFSGRLSYWLMMLIDFFESIWIFANIVYYREFSDFLSMGIIKGSGNVQNNLGK SLMEIIHFTDFFVFLDILILILLLVFKVIRIDAKPFKKRYALLISGLSLVLMAGEYGLAN SDRSGLLTRTFDNNYIVKYLGLNEYAAFNAYQTHKESATRSHAKASDMDSILKYLKNNRA AANPEYFGKEKGKNVFIIHLESFQQFLINYKVDGKEVTPHLNAFYKNRHTLSFDNFYHQV AQGKTSDAEMMLENSLYGLPQGSAMVTYGGQNTFQAAPAILDQRGYTTAAFHGDVPSFWN RDSTYKSWGYQYFFSSQYYKTKPSYNVGYGMKDKIFFRDAANYIQQLPQPFYAKLITLTN HYPYLLDKQNTDFPATKTGDKTVDPYVQTAHYLDQAFAEFLNYLKKTGLYKNSVIVLYGD HYGISNNHRPAIAQLLHKKSINSYDLAQFQKVPFMIHAAGLKGGIRQTYGGEIDVLPTLL HLLGIKDNNTIQFGTDLLSKQHDQRVAFRDGDFVTPKYTKVGSTVYLTRSGKEITPNATQ KRQIASIQNHVTTELSLSDRVIYGDLLRFYTPKGFQKVNRKDFTYQYTKGMDNLKKAQEE HPTSIEAKNNGKSTMDLYKTDAPELK Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:18:06 2011 Seq name: gi|238617814|gb|GG669607.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD4, whole genome shotgun sequence Length of sequence - 26292 bp Number of predicted genes - 27, with homology - 27 Number of transcription units - 18, operones - 7 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 1055 847 ## Lbuc_1557 hypothetical protein + Term 1125 - 1160 5.1 - Term 1111 - 1146 5.1 2 2 Op 1 6/0.000 - CDS 1333 - 1911 430 ## COG3293 Transposase and inactivated derivatives 3 2 Op 2 . - CDS 1812 - 2120 119 ## COG3293 Transposase and inactivated derivatives - Prom 2150 - 2209 4.4 + Prom 2050 - 2109 4.1 4 3 Tu 1 . + CDS 2135 - 3394 942 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] + Prom 4752 - 4811 5.1 5 4 Tu 1 . + CDS 4844 - 5971 749 ## COG4886 Leucine-rich repeat (LRR) protein + Prom 6565 - 6624 80.4 6 5 Op 1 . + CDS 6820 - 7512 498 ## Lbuc_0544 lipoprotein + Term 7562 - 7600 -0.3 + Prom 7602 - 7661 7.0 7 5 Op 2 . + CDS 7781 - 8005 153 ## gi|227509221|ref|ZP_03939270.1| hypothetical protein HMPREF0496_1384 - Term 7996 - 8049 3.0 8 6 Tu 1 . - CDS 8197 - 8556 363 ## LAF_1783 putative resolvase - Prom 8580 - 8639 80.4 - Term 9841 - 9875 0.1 9 7 Tu 1 . - CDS 10037 - 10945 487 ## Swol_0509 hypothetical protein - Prom 11017 - 11076 8.3 10 8 Op 1 . - CDS 11165 - 11926 375 ## LSL_2017 hypothetical protein 11 8 Op 2 . - CDS 11968 - 12183 135 ## LSL_2006 hypothetical protein - Prom 12333 - 12392 7.2 + Prom 12208 - 12267 3.1 12 9 Tu 1 . + CDS 12450 - 12962 388 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 13 10 Op 1 . - CDS 14325 - 15149 529 ## gi|227509229|ref|ZP_03939278.1| hypothetical protein HMPREF0496_1392 14 10 Op 2 . - CDS 15162 - 15812 452 ## gi|227509230|ref|ZP_03939279.1| hypothetical protein HMPREF0496_1393 15 10 Op 3 . - CDS 15891 - 16070 139 ## gi|227509231|ref|ZP_03939280.1| hypothetical protein HMPREF0496_1394 - Prom 16143 - 16202 4.9 16 10 Op 4 . - CDS 16228 - 16482 174 ## gi|227509232|ref|ZP_03939281.1| hypothetical protein HMPREF0496_1395 - Prom 16622 - 16681 80.4 17 11 Tu 1 . - CDS 17673 - 17825 91 ## gi|227509233|ref|ZP_03939282.1| hypothetical protein HMPREF0496_1396 + Prom 17950 - 18009 6.3 18 12 Tu 1 . + CDS 18050 - 18631 289 ## gi|227509234|ref|ZP_03939283.1| hypothetical protein HMPREF0496_1397 + Term 18663 - 18734 27.5 19 13 Op 1 . - CDS 18733 - 18960 270 ## gi|227509235|ref|ZP_03939284.1| hypothetical protein HMPREF0496_1398 20 13 Op 2 . - CDS 18967 - 19752 573 ## COG1192 ATPases involved in chromosome partitioning - Prom 19872 - 19931 7.3 21 14 Tu 1 . + CDS 20153 - 20797 194 ## LACR_C57 hypothetical protein 22 15 Tu 1 . + CDS 21603 - 22478 516 ## Lbuc_2388 hypothetical protein + Term 22663 - 22699 2.2 23 16 Tu 1 . + CDS 22997 - 23362 434 ## gi|227509240|ref|ZP_03939289.1| hypothetical protein HMPREF0496_1403 + Term 23437 - 23472 3.1 24 17 Op 1 . - CDS 23483 - 24652 673 ## LVIS_A07 relaxase/mobilization nuclease domain-containing protein 25 17 Op 2 . - CDS 24634 - 25332 468 ## SE_p205 mobilization protein - Prom 25486 - 25545 4.4 + Prom 25413 - 25472 4.5 26 18 Op 1 . + CDS 25501 - 25752 279 ## LSEI_0591 transposase 27 18 Op 2 . + CDS 25806 - 26292 160 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|238617814|gb|GG669607.1| GENE 1 3 - 1055 847 350 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1557 NR:ns ## KEGG: Lbuc_1557 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 14 348 248 576 576 114 33.0 8e-24 AAAQSAAAQLNGKWIKASDLQATSASSSAGSSAATAIADNAIRITFTDQAGKQVGKSFDY AKTGATKGATLGALTNNNGYYQWTLTQAQKADLTTLISNALEGTGYSFDLNNAANEATLA QTKTGAESKIALTKGATVYQLLTPYVQTATGDNINVTKINAIPATSDNAAVFQGKVTVPT GTAGSTKAEDFTFSDYVKNDATGSFDFTKFRTDFDKKYADSTANDKAAYVKALNGLIQSE AAKYYVSPANLSFADLFSGSQGAAYSSTDVANYINGKAQLKTLKSGFFPTIDNDGNASQT FNQYTFTFNGATGGTFGNGATRVIYTSSPAATNLTYPSKPAATTVNPFGE >gi|238617814|gb|GG669607.1| GENE 2 1333 - 1911 430 192 aa, chain - ## HITS:1 COG:MA2835 KEGG:ns NR:ns ## COG: MA2835 COG3293 # Protein_GI_number: 20091659 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Methanosarcina acetivorans str.C2A # 24 192 102 270 278 114 36.0 1e-25 MVSATNASRAITVRSGFKKIVATLRSKQDRSALTSFIIVDAQSVKNTETAENKGYDAGKK ISGIKRHLAVDMNGFPQAIHLTRANVSDRDGASAMLALNAENLRRVRSVLVDGGYSGRNF AMDVQLNLKATTQVAKRNELHKFEVLPQRWIIERSFSWLEKYRRLWKNCERQLHTSTTMV TLAFVSVFLRRF >gi|238617814|gb|GG669607.1| GENE 3 1812 - 2120 119 102 aa, chain - ## HITS:1 COG:alr7025 KEGG:ns NR:ns ## COG: alr7025 COG3293 # Protein_GI_number: 17233041 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Nostoc sp. PCC 7120 # 4 76 5 77 262 83 52.0 9e-17 MPNYPSNITRQQFEVIRSELENFCQRTKPRQVDLYDVFCAILYILKTGAQWRALPHDFPK WQTVYTYFRLWSRQPTPAEPSLLDQVLKKLSLPYDPSRIVRR >gi|238617814|gb|GG669607.1| GENE 4 2135 - 3394 942 419 aa, chain + ## HITS:1 COG:SP0730 KEGG:ns NR:ns ## COG: SP0730 COG0028 # Protein_GI_number: 15900627 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Streptococcus pneumoniae TIGR4 # 9 419 177 586 591 342 42.0 6e-94 MQKYTKTQFRSQTVSKNFARPELGAGSDEQINQALDLIKQAKKPILYVGQGTYGAADEVM QFAKKFQIPVITTALGKEIIPYDFEALLGSAFRVASKPANEALQETDLMLFVGSNYPFAE VMFKPNVKFIQIDNNPQVLGKRHKTDVAILADAKKSLQRFIELGEDSQPSAWYAANVDNV ANWHQYNDDMMNRTDGDLRFEPAFKEINRISEDDAIYSIDVGDVTQNAVRLLKVNGKQPW ITSGLFATMGVGLPGSIAAKLSYPNRQVFNLAGDGAAAMVMQDLSTQVAYHLPVINVVFS NDALGFIEDEQEDDNHEWFGISLPQTDFAKVAEGQGMTGITVDKVDQMKPAFDKAVELTK AGKPVLIDIKITNERPIPVEKLTLDADKYDQKTIDDFKKRYYAEKLVPLSDYLKKHNVQ >gi|238617814|gb|GG669607.1| GENE 5 4844 - 5971 749 375 aa, chain + ## HITS:1 COG:lin0372 KEGG:ns NR:ns ## COG: lin0372 COG4886 # Protein_GI_number: 16799449 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 54 292 40 266 656 104 34.0 4e-22 MEEKRHYKMYKSGKSWLIAAITTVALLMGGFVKTPWVENTSSSITVAHAATNENSWMPDT NLQKAVLNELRSEKIVPSSASTFTQNDLVKMQTLSINTNQPNDLEGLQYATSLNSLTIAN NNSNNGISSLVPLANLTNLKKLELDNNKISDLTPLAKLTSLTELHLNNNNISDIQPLSSL TNLTHLELGHNKISDSDTSPLKSLTNLSYLKISGNRSLTNLNNLSNLKSLTELHASDLPN LTDISGIKNSSKLNKVEMARDAISDISVFKGFTGLKSVTLDNNHISDLSPLNGSFKGHIS SPETLLAHAQTVPLSSAPIDYTGQKVTVSNGAWSVNNDSYTYRFDGNASLPDPVNKQSIS ASDYTTYVGAAKLAS >gi|238617814|gb|GG669607.1| GENE 6 6820 - 7512 498 230 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0544 NR:ns ## KEGG: Lbuc_0544 # Name: not_defined # Def: lipoprotein # Organism: L.buchneri # Pathway: not_defined # 61 230 499 672 672 150 50.0 3e-35 MDQNGNKIAPDETQTGNVGDGYSTTQKSINGYTFNKVTGNATGTYTNGTIEITYVYSESN TEPNPGDGKVAVKGAAVYAIKKIGLYKNPNFKNDNRIKWYLKEKRVNRPEFIVKGYYRNK QGTLRYRVQQYNPYTRKYVKGTNGYITTDSKYVVPAYYSSLPKGKRVIVINHSGVNSYKN ISLTKKVKNLKKGTRLQVKKVVKFKYATRYVLTNGQYVTANKKFVIASNY >gi|238617814|gb|GG669607.1| GENE 7 7781 - 8005 153 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509221|ref|ZP_03939270.1| ## NR: gi|227509221|ref|ZP_03939270.1| hypothetical protein HMPREF0496_1384 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1384 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 74 1 74 74 132 100.0 1e-29 MNESAKLLPQKYMESDKVHVLGIDMSRGKISCALLHDHTVIKEFQITHNKSGLAKLKSII RHDNFLFLQKYIKV >gi|238617814|gb|GG669607.1| GENE 8 8197 - 8556 363 119 aa, chain - ## HITS:1 COG:no KEGG:LAF_1783 NR:ns ## KEGG: LAF_1783 # Name: not_defined # Def: putative resolvase # Organism: L.fermentum # Pathway: not_defined # 1 118 43 160 160 212 95.0 4e-54 MNSIQNKGATLDVLNLPSMTGIADPNLRQLMTNLIIELYKYQAESERKRIIERQQQGISL AKQQGKYHGRKPQYAEDDPRLLHAFKLYQNGMSDVDVARNTGIKRTTFIRYRKKFSVYR >gi|238617814|gb|GG669607.1| GENE 9 10037 - 10945 487 302 aa, chain - ## HITS:1 COG:no KEGG:Swol_0509 NR:ns ## KEGG: Swol_0509 # Name: not_defined # Def: hypothetical protein # Organism: S.wolfei # Pathway: not_defined # 126 300 259 426 432 109 39.0 1e-22 MELYSERHGKRDLKQHTYCINENMYSLLLSCCTKYKKNLTKIFQLPCHNSFVDEDYIKFN EKIFSQRINSKIPSLFRNESGAIAAPKSGDNYDQYALLDLIEFFGKNIKDVHEAWNNENY RNYKNIYIYDSSKVFNEFKNSINELFSEAGLLYELNDEKIIERLVDDDVLTPEIETSFES LTDKQLHDLLESAIDFYRTPNNSARQESLEKLWGALERLKTYYESLNKKESVQKIVKNMA HEDEDFYKMFDDEFKLLTKIGNNYNIRHHETNQKDLPDKNYYDYLFNRCLSLIALSVKYL LK >gi|238617814|gb|GG669607.1| GENE 10 11165 - 11926 375 253 aa, chain - ## HITS:1 COG:no KEGG:LSL_2017 NR:ns ## KEGG: LSL_2017 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 1 35 1 35 41 71 94.0 4e-11 MCAPNLLQFVPNDYIANNYLKTNFYLKDVLCYRKVEEKITGTMPSNLKFDDSEGKAKNWS LLRHCCFISCFTMLSTNDFKDGILDLGFAEKLKKGNVDNAGNRVERPFITISSENTQKLL IDLSNQVNDYLKDNNLKGSGLFSRAVRYLDEDDYKKEELYEENNITNINGVFINNDTKMI SRSSRNDSLLKNILQFLYLFKPIYFKDQHEYRLGLTLDDPIDVNELFIPIHDLRKYVKVH PFQDINNLQLEDI >gi|238617814|gb|GG669607.1| GENE 11 11968 - 12183 135 71 aa, chain - ## HITS:1 COG:no KEGG:LSL_2006 NR:ns ## KEGG: LSL_2006 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 10 61 1 52 59 85 84.0 7e-16 MYVSNAKINIANSSINESVWKTLIDCETFLKIIPCSHGPHLAREKTATALKTSCEVYYTK KLATTSSRSKY >gi|238617814|gb|GG669607.1| GENE 12 12450 - 12962 388 170 aa, chain + ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 14 167 18 169 426 148 49.0 6e-36 MFFDDEPHGVFFLIDNKSFYASCEAVARGLNPLKVPLVVLSEAENTNGGLILATSPEAKH LFHLKANVSRKRDLPNDPRLWVVPPRMNLYIQRNLQINQIFHQFITEKEVWPYSIDESIL DMTHTWRLFGNSVREVARLIQKTVRQKLGLYTTVGIGDNPVQAKLALLAS >gi|238617814|gb|GG669607.1| GENE 13 14325 - 15149 529 274 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509229|ref|ZP_03939278.1| ## NR: gi|227509229|ref|ZP_03939278.1| hypothetical protein HMPREF0496_1392 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1392 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 274 3 276 276 464 100.0 1e-129 MGKDSWMEPIVYKGKRFTSYRQAASFLGITATGFSKRYKKYQKGQCTLEELFSTDKHDAN KKNLTYHGKTFTSYQETAQAIGISNSTFYRRLKKYHDHQITLDELFLSAHYRDYKLPPFH EKVFENETDAANYVGISLNRFSQRLKKYDKGLYTVDDLYSRNSANLRAKSLKTTKLHYQG ITFNSYKAAYNYIGISSAAFNERLKKYLNGAFTIEQLFRSPKHSQGHMIKYHRRTFYSYK EAAQYIGISYNAFNKRLKKYKSNAITLDELFAKT >gi|238617814|gb|GG669607.1| GENE 14 15162 - 15812 452 216 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509230|ref|ZP_03939279.1| ## NR: gi|227509230|ref|ZP_03939279.1| hypothetical protein HMPREF0496_1393 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1393 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 216 1 216 216 389 100.0 1e-107 MDPIQYSGKSFTSYQQAADFVGITKTGFAKRYRKYQAGEYDLNDLFYNGNYHLTHVICYK NQKFSSHADAAKFIGITSVSFNRRYKKYLRSEISLEDLFRAPTYTTYPMPVWHGKTFSSK KAAANYVGVSQNTFTQRLKRYYKGDYVLDDIFTADPLELQKKHSKTMALTYKGRTFETQQ EACQYLGISQSAFSARYHKYLSGKLTIDELFRRHRH >gi|238617814|gb|GG669607.1| GENE 15 15891 - 16070 139 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509231|ref|ZP_03939280.1| ## NR: gi|227509231|ref|ZP_03939280.1| hypothetical protein HMPREF0496_1394 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1394 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 59 1 59 59 81 100.0 2e-14 MTPKLLFIGLLVVLSGFIIFKQNNKFTVEDPFKLFMLCIGFSIIFMGVCLIILGLDYHL >gi|238617814|gb|GG669607.1| GENE 16 16228 - 16482 174 84 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509232|ref|ZP_03939281.1| ## NR: gi|227509232|ref|ZP_03939281.1| hypothetical protein HMPREF0496_1395 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1395 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 84 41 124 124 150 100.0 3e-35 MNSPSWFNPSAIQQVSLENLEGLIPLVKFEDREQLIGLIAVLKKMVIERKSLKQHELHQF KDLLNKYNVVMTKLAEFLLKHFIS >gi|238617814|gb|GG669607.1| GENE 17 17673 - 17825 91 50 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509233|ref|ZP_03939282.1| ## NR: gi|227509233|ref|ZP_03939282.1| hypothetical protein HMPREF0496_1396 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1396 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 50 21 70 70 83 100.0 6e-15 MSQQTETNENLINHYQVYRQGNFLGTVTAFPDYANRSFYLVFNEDEHFFE >gi|238617814|gb|GG669607.1| GENE 18 18050 - 18631 289 193 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509234|ref|ZP_03939283.1| ## NR: gi|227509234|ref|ZP_03939283.1| hypothetical protein HMPREF0496_1397 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1397 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 193 1 193 193 350 100.0 3e-95 MKPYFYILLTTLIILISPITSYAAVNSDYKEGFTYQNPTVITYQYENQPISKDRTAYQSA FRAWTKALHQKIKFIKVADAPDVVISSANYGDWYTDKAGNTYYMNAVTQLTVSGSVLIHS KIYMYDKTLIKTGNDNKTMRLLVAEHEIGHILGLGELDQHPNDVMSRIWDYSSQKLKISQ LDVRTVLQGDNLG >gi|238617814|gb|GG669607.1| GENE 19 18733 - 18960 270 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509235|ref|ZP_03939284.1| ## NR: gi|227509235|ref|ZP_03939284.1| hypothetical protein HMPREF0496_1398 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1398 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 75 1 75 75 115 100.0 2e-24 MTEDFLNKVSKKASAQLGNLKSPYQLETEKTKTVQLRMSTYKEVKRLAFENDEKIVDVLE KLIHSGLSQRNPNLK >gi|238617814|gb|GG669607.1| GENE 20 18967 - 19752 573 261 aa, chain - ## HITS:1 COG:pli0069 KEGG:ns NR:ns ## COG: pli0069 COG1192 # Protein_GI_number: 18450351 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Listeria innocua # 10 260 26 284 293 124 30.0 1e-28 MNGKTLLNFNFKGGVGKTTLTVMETYLLGQENKKVLLIDFDPQGNATEIMRETYHIILKP KLSLYEGLLRGDLSKSIVAVTDQIDMIPTDWTLSLWIGIVEKVSQTERNILLSKMLSQLK QNYDYIFIDVPPTINVFTNNAIMASDFISIVLQTQKQAYTSSLKTATHLGELREQYHGNF RLIGVILYLMKPRAKVDTEIAARAKDFFGEGVFLNSIRTQERVKTFTNEGIRNKDRWDKR AIKMYQMVLNEQLFRIQQLEG >gi|238617814|gb|GG669607.1| GENE 21 20153 - 20797 194 214 aa, chain + ## HITS:1 COG:no KEGG:LACR_C57 NR:ns ## KEGG: LACR_C57 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 1 210 1 209 330 196 54.0 7e-49 MNQDNFYKVSEVYAETYYQLPKVLFTNDNYKGLSNDAKVAFALLKDRFNYSVRNHWVDEQ DNLYFVYTNQALKEILNCSEPKIIKIKKDLETAHLLYQKRIGINQPNRLYLLKPEVTAND VYRQVSSQSLDNSGTKNSLVPKNVDNSGTKNSLVPVNSTNTDCQTLDNSGTKNSLVNLYK EHKDIDKSRYNIDTQKLDFSTAQFSPAELEKLAS >gi|238617814|gb|GG669607.1| GENE 22 21603 - 22478 516 291 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2388 NR:ns ## KEGG: Lbuc_2388 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 23 276 29 306 332 105 29.0 3e-21 MQFFKVKESNLNSDLKGGNEILIYSLLEDRMQASTKNKDFFSKKFNDYYVIYTRDELAMK LGVNVSTITEVFKRLVKKGYLVMKHQFNGATKLFLPKFENETSPEANHDNVKREIQRPEI GKPNSSRTPNSNNKQTIYTRDTCPETNSKKIVTITQKEKPAAKRKKLNELEINALSNSLE TKAGFSKRTVNMLKALSFNDPKKLYQLSGMVFKAKNVVKKQARNVRNSQLALSFENNNRY EDMAVDLQRIVMTASRSKRSNVEGYIFSSLVNYFQEAVNDYCSHDVQSVIG >gi|238617814|gb|GG669607.1| GENE 23 22997 - 23362 434 121 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227509240|ref|ZP_03939289.1| ## NR: gi|227509240|ref|ZP_03939289.1| hypothetical protein HMPREF0496_1403 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1403 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 121 1 121 121 228 100.0 1e-58 MNQGHRIETVINGHHVNKNHYFSLKSYQWRVRHHKTVGKKNLAIGQLAWVEVTGQPKPVL VIITGIHTLTEPADRQVARQLKTVKTITTNSVKDLDARTRDNFDHYLAAHPQGDAFYRPK K >gi|238617814|gb|GG669607.1| GENE 24 23483 - 24652 673 389 aa, chain - ## HITS:1 COG:no KEGG:LVIS_A07 NR:ns ## KEGG: LVIS_A07 # Name: not_defined # Def: relaxase/mobilization nuclease domain-containing protein # Organism: L.brevis # Pathway: not_defined # 1 389 1 389 389 550 85.0 1e-155 MATTHIKRSTSASRLVNYAEKRAVKQDGLNLDIQYAKSEFKQVRDIYGNPGKTQAYASRI AFSPLEFNPQAPHDQATVLAVAKEVYAKAYPNQQVALYEHADTDSLHVHAVIGAINLETG QKMHGNWHQYRDHLVQVTDQVCQEQGLMVTQPDPNRHEKRSMAEIKLRAKQQPTWKDQIR QAVDHTMQNPLIRDFQAFQDDLKQQAVKVWERGKNLTYQLLGTNYKSRGTKLGLDYEKET IFNELASRQNQTRTNQQPERTVNPTIDPAQSDHSRTPELPGHSDSTASHSQNVPRSTTSS DRTDRPTSQPTVSDDLKQLRQQQRQLAGPIKTDLTKRLRSIPKADQPDQSGKSDRAQTNS NRTSQKQPAPQPTQRPSEPDHSRDDGPSR >gi|238617814|gb|GG669607.1| GENE 25 24634 - 25332 468 232 aa, chain - ## HITS:1 COG:no KEGG:SE_p205 NR:ns ## KEGG: SE_p205 # Name: not_defined # Def: mobilization protein # Organism: S.epidermidis # Pathway: not_defined # 132 231 21 126 127 90 47.0 5e-17 MLMMQNHSANCPRLEDFFTQIPITILSKNAKLCQKVASQSANHFGIAQRTWGSRGSVSFP PCKHRSCHKRSLVASMRVACQASVIRLSLGGHQPSADPTFDISNNIARRATEVGLVNELQ NLASTKKTTQVHRQASKQINFRVNEPDYLKLARSAQTLNLSVPAFAKKKAQGARLVAPKI AAQDAQNITHQLAKIGGNLNQLAHHANQGGQVDPQALRDLQNEVQRVWQQLT >gi|238617814|gb|GG669607.1| GENE 26 25501 - 25752 279 83 aa, chain + ## HITS:1 COG:no KEGG:LSEI_0591 NR:ns ## KEGG: LSEI_0591 # Name: not_defined # Def: transposase # Organism: L.casei # Pathway: not_defined # 1 79 1 79 131 136 94.0 3e-31 MPTHYDKEFKQNIINLYKQGESAAQLAREYGIGYSTVHKWIQGQAKTQSGKSPDEIKAME KRLASLSEENEILKKALGFLAQK >gi|238617814|gb|GG669607.1| GENE 27 25806 - 26292 160 162 aa, chain + ## HITS:1 COG:BMEII0228 KEGG:ns NR:ns ## COG: BMEII0228 COG2801 # Protein_GI_number: 17988572 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Brucella melitensis # 1 160 18 172 309 94 35.0 6e-20 MCRILGVSRDQYYRYRSPKPSKRRAEDAGLKQRILRIFAEFKQRYGVMKIHHELNLELQP LQRRCSPRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKWTAD MTYIQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMATDLVLKT Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:24:58 2011 Seq name: gi|238617813|gb|GG669608.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD5, whole genome shotgun sequence Length of sequence - 737616 bp Number of predicted genes - 710, with homology - 696 Number of transcription units - 358, operones - 175 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 12 - 103 59.1 # Ser GGA 0 0 + TRNA 125 - 196 66.8 # Glu TTC 0 0 + TRNA 201 - 273 85.5 # Val TAC 0 0 + TRNA 288 - 361 74.0 # Asp GTC 0 0 + TRNA 425 - 497 73.8 # Phe GAA 0 0 + TRNA 503 - 588 70.7 # Tyr GTA 0 0 + TRNA 590 - 660 58.5 # Trp CCA 0 0 + TRNA 675 - 747 57.1 # His GTG 0 0 + TRNA 755 - 826 67.4 # Gln TTG 0 0 + TRNA 848 - 918 71.2 # Cys GCA 0 0 + TRNA 952 - 1036 68.0 # Leu CAA 0 0 - Term 1434 - 1484 17.3 1 1 Op 1 16/0.000 - CDS 1591 - 2328 301 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 2 1 Op 2 . - CDS 2325 - 4469 1897 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 4615 - 4674 4.8 + Prom 4621 - 4680 5.4 3 2 Tu 1 . + CDS 4785 - 5954 734 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 5987 - 6046 17.6 - Term 5975 - 6034 16.2 4 3 Tu 1 . - CDS 6038 - 6934 526 ## Lbuc_0784 peptidase M10A and M12B matrixin and adamalysin - Prom 7042 - 7101 11.0 - Term 7015 - 7075 11.6 5 4 Op 1 . - CDS 7113 - 7931 691 ## COG3971 2-keto-4-pentenoate hydratase 6 4 Op 2 . - CDS 7951 - 8172 151 ## - Prom 8408 - 8467 4.7 7 5 Tu 1 . - CDS 8555 - 9127 462 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 9159 - 9218 8.2 + Prom 9103 - 9162 7.3 8 6 Op 1 9/0.011 + CDS 9317 - 9586 328 ## COG3830 ACT domain-containing protein 9 6 Op 2 . + CDS 9601 - 10944 1484 ## COG2848 Uncharacterized conserved protein + Term 10985 - 11031 4.1 + Prom 10992 - 11051 6.8 10 7 Tu 1 . + CDS 11170 - 13560 1489 ## COG1472 Beta-glucosidase-related glycosidases + Term 13634 - 13693 12.4 - Term 13622 - 13681 8.6 11 8 Tu 1 . - CDS 13687 - 14115 448 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 14164 - 14223 7.7 + Prom 14140 - 14199 7.5 12 9 Tu 1 . + CDS 14341 - 15735 1066 ## COG1376 Uncharacterized protein conserved in bacteria + Term 15808 - 15864 15.8 - Term 15796 - 15852 2.4 13 10 Op 1 . - CDS 15882 - 16205 332 ## Lbuc_0797 integral membrane protein 14 10 Op 2 . - CDS 16242 - 16715 459 ## Lbuc_0798 hypothetical protein - Prom 16849 - 16908 6.4 - Term 16835 - 16875 5.6 15 11 Tu 1 . - CDS 16912 - 19866 2502 ## COG2409 Predicted drug exporters of the RND superfamily - Prom 19888 - 19947 11.3 + Prom 19865 - 19924 6.2 16 12 Tu 1 . + CDS 20046 - 20609 310 ## Lbuc_0800 regulatory protein TetR + Prom 20630 - 20689 3.9 17 13 Tu 1 . + CDS 20842 - 21141 274 ## COG4367 Uncharacterized protein conserved in bacteria + Term 21200 - 21259 -0.8 - Term 21188 - 21245 -0.5 18 14 Tu 1 . - CDS 21271 - 21873 488 ## Lbuc_0827 hypothetical protein + Prom 22190 - 22249 8.1 19 15 Op 1 . + CDS 22346 - 23770 1101 ## COG1027 Aspartate ammonia-lyase + Prom 23861 - 23920 7.5 20 15 Op 2 . + CDS 23965 - 26745 1572 ## COG0474 Cation transport ATPase + Term 26837 - 26892 12.4 + Prom 26827 - 26886 9.0 21 16 Op 1 2/0.160 + CDS 26919 - 27371 377 ## COG1846 Transcriptional regulators 22 16 Op 2 1/0.234 + CDS 27395 - 27910 299 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 23 16 Op 3 . + CDS 27926 - 28642 548 ## COG3382 Uncharacterized conserved protein 24 17 Tu 1 . - CDS 28934 - 29515 541 ## Lbuc_0809 hypothetical protein - Prom 29576 - 29635 7.0 25 18 Tu 1 . - CDS 29710 - 30339 569 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 30408 - 30467 5.8 + Prom 30148 - 30207 5.8 26 19 Tu 1 . + CDS 30426 - 31610 916 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Term 31631 - 31676 2.8 - Term 31585 - 31624 2.7 27 20 Tu 1 . - CDS 31730 - 31924 144 ## - Prom 31992 - 32051 4.8 + Prom 31933 - 31992 5.3 28 21 Op 1 3/0.117 + CDS 32016 - 33137 1060 ## COG1062 Zn-dependent alcohol dehydrogenases, class III + Prom 33139 - 33198 1.9 29 21 Op 2 . + CDS 33245 - 34720 1370 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 34759 - 34805 11.0 + Prom 34738 - 34797 5.5 30 22 Tu 1 . + CDS 34878 - 35513 348 ## Lbuc_0379 Haloacid dehalogenase domain-containing protein hydrolase 31 23 Tu 1 . - CDS 35562 - 35861 357 ## Lbuc_0818 hypothetical protein - Prom 35922 - 35981 3.4 - Term 35985 - 36033 2.1 32 24 Op 1 2/0.160 - CDS 36048 - 36554 501 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 33 24 Op 2 . - CDS 36580 - 37722 857 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family - Prom 37841 - 37900 6.8 + Prom 37622 - 37681 6.8 34 25 Tu 1 . + CDS 37787 - 37981 91 ## gi|227510072|ref|ZP_03940121.1| hypothetical protein HMPREF0496_2235 - Term 37788 - 37833 4.2 35 26 Op 1 . - CDS 37969 - 38823 425 ## PROTEIN SUPPORTED gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 36 26 Op 2 . - CDS 38820 - 40004 1114 ## COG0477 Permeases of the major facilitator superfamily - Prom 40104 - 40163 7.2 + Prom 39955 - 40014 5.5 37 27 Tu 1 . + CDS 40263 - 42623 1466 ## COG0210 Superfamily I DNA and RNA helicases + Term 42646 - 42680 1.3 - Term 42623 - 42679 7.6 38 28 Tu 1 . - CDS 42717 - 44156 861 ## COG4690 Dipeptidase - Prom 44185 - 44244 4.8 - Term 44270 - 44322 8.1 39 29 Tu 1 . - CDS 44338 - 44793 386 ## Lbuc_0823 hypothetical protein - Prom 44843 - 44902 5.3 - Term 44865 - 44899 -1.0 40 30 Tu 1 . - CDS 44956 - 45855 446 ## COG2801 Transposase and inactivated derivatives 41 31 Op 1 . - CDS 45912 - 46607 478 ## LAR_1016 putative transposase 42 31 Op 2 . - CDS 46701 - 48209 1098 ## COG1892 Uncharacterized protein conserved in archaea - Prom 48244 - 48303 7.3 - Term 48407 - 48456 3.3 43 32 Tu 1 . - CDS 48462 - 48893 351 ## LCAZH_0456 putative redox protein, regulator of disulfide bond formation - Prom 48918 - 48977 4.7 + Prom 48877 - 48936 5.1 44 33 Op 1 . + CDS 49092 - 50948 1041 ## COG0475 Kef-type K+ transport systems, membrane components 45 33 Op 2 . + CDS 51021 - 54644 2745 ## COG1404 Subtilisin-like serine proteases + Term 54701 - 54740 2.1 - Term 54689 - 54727 3.5 46 34 Tu 1 . - CDS 54797 - 55714 960 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 55943 - 56002 6.4 + Prom 55842 - 55901 5.3 47 35 Tu 1 . + CDS 55935 - 57140 811 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 57157 - 57216 2.1 - Term 57065 - 57098 -1.0 48 36 Tu 1 . - CDS 57221 - 58969 1792 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] + Prom 59448 - 59507 4.1 49 37 Op 1 . + CDS 59537 - 60307 359 ## COG1085 Galactose-1-phosphate uridylyltransferase + Prom 60311 - 60370 7.6 50 37 Op 2 . + CDS 60407 - 61129 672 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 61145 - 61195 1.2 - Term 61140 - 61174 3.1 51 38 Tu 1 . - CDS 61215 - 62255 842 ## Lbuc_0829 hypothetical protein - Prom 62311 - 62370 5.7 52 39 Tu 1 . + CDS 62576 - 63973 1397 ## COG0277 FAD/FMN-containing dehydrogenases + Term 63991 - 64043 3.3 - Term 63978 - 64031 11.1 53 40 Op 1 . - CDS 64050 - 64340 360 ## COG1359 Uncharacterized conserved protein - Prom 64371 - 64430 7.0 54 40 Op 2 . - CDS 64541 - 66952 2120 ## COG3957 Phosphoketolase - Prom 67026 - 67085 6.2 - Term 67102 - 67146 2.4 55 41 Tu 1 . - CDS 67266 - 67397 117 ## gi|227524239|ref|ZP_03954288.1| hypothetical protein HMPREF0519_1948 - Prom 67481 - 67540 8.4 + Prom 67529 - 67588 7.1 56 42 Op 1 . + CDS 67628 - 68896 664 ## gi|227510095|ref|ZP_03940144.1| hypothetical protein HMPREF0496_2258 57 42 Op 2 . + CDS 68980 - 69723 703 ## COG2365 Protein tyrosine/serine phosphatase 58 42 Op 3 . + CDS 69793 - 70191 494 ## COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase + Term 70207 - 70244 2.3 + Prom 70241 - 70300 5.8 59 43 Tu 1 . + CDS 70337 - 72094 1621 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] + Term 72118 - 72176 14.0 + Prom 72099 - 72158 3.5 60 44 Tu 1 . + CDS 72216 - 72932 204 ## gi|227513028|ref|ZP_03943077.1| hypothetical protein HMPREF0497_2150 + Term 73089 - 73131 3.1 61 45 Tu 1 . - CDS 73119 - 73616 425 ## Lbuc_0839 hypothetical protein - Prom 73733 - 73792 3.6 - Term 73759 - 73811 11.4 62 46 Tu 1 . - CDS 73832 - 75823 1635 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters - Prom 75854 - 75913 3.7 63 47 Op 1 . - CDS 75950 - 76141 139 ## - Term 76144 - 76188 3.1 64 47 Op 2 . - CDS 76198 - 76737 401 ## COG1309 Transcriptional regulator - Prom 76759 - 76818 5.8 + Prom 76779 - 76838 6.5 65 48 Op 1 . + CDS 76956 - 77861 596 ## BBIF_0346 conserved hypothetical membrane spanning protein of the cation efflux family 66 48 Op 2 . + CDS 77884 - 79359 946 ## COG4690 Dipeptidase + Prom 79453 - 79512 7.7 67 49 Tu 1 . + CDS 79571 - 81394 1173 ## Lbuc_0544 lipoprotein + Term 81410 - 81447 2.0 - Term 82112 - 82158 7.6 68 50 Tu 1 . - CDS 82175 - 82705 359 ## OEOE_0060 alpha/beta fold family hydrolase - Prom 82861 - 82920 4.6 69 51 Tu 1 . - CDS 83321 - 84094 648 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 84141 - 84200 7.0 + Prom 84098 - 84157 5.4 70 52 Op 1 . + CDS 84224 - 84922 345 ## COG4990 Uncharacterized protein conserved in bacteria 71 52 Op 2 40/0.000 + CDS 84940 - 85677 750 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 72 52 Op 3 . + CDS 85674 - 87170 1043 ## COG0642 Signal transduction histidine kinase + Term 87174 - 87216 7.0 - Term 88755 - 88795 3.5 73 53 Tu 1 . - CDS 88838 - 89314 404 ## LVIS_0446 hypothetical protein - Prom 89366 - 89425 5.4 74 54 Tu 1 . + CDS 89727 - 90029 255 ## gi|227510114|ref|ZP_03940163.1| hypothetical protein HMPREF0496_2277 + Term 90188 - 90237 -0.5 75 55 Tu 1 . - CDS 90196 - 90885 332 ## COG0739 Membrane proteins related to metalloendopeptidases - Prom 90952 - 91011 9.2 76 56 Tu 1 . - CDS 92343 - 92534 80 ## gi|227513045|ref|ZP_03943094.1| hypothetical protein HMPREF0497_2167 - Prom 92662 - 92721 5.1 - TRNA 92742 - 92814 65.8 # Gln CTG 0 0 + TRNA 92946 - 93019 56.4 # Glu CTC 0 0 77 57 Tu 1 . - CDS 93223 - 94599 927 ## Lbuc_0485 peptidase M10A and M12B matrixin and adamalysin - Prom 94665 - 94724 6.8 - Term 95468 - 95522 7.7 78 58 Tu 1 . - CDS 95641 - 95970 178 ## Lbuc_0850 hypothetical protein - Prom 96005 - 96064 7.7 + Prom 96085 - 96144 7.7 79 59 Op 1 35/0.000 + CDS 96262 - 98007 197 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 80 59 Op 2 . + CDS 97988 - 99829 199 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 81 59 Op 3 . + CDS 99856 - 100863 626 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Term 100880 - 100928 9.1 82 60 Op 1 10/0.011 - CDS 100966 - 101670 649 ## COG3442 Predicted glutamine amidotransferase 83 60 Op 2 . - CDS 101670 - 103016 935 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 84 61 Op 1 3/0.117 + CDS 103109 - 103768 306 ## COG1435 Thymidine kinase 85 61 Op 2 32/0.000 + CDS 103787 - 104860 1129 ## COG0216 Protein chain release factor A 86 61 Op 3 10/0.011 + CDS 104865 - 105731 434 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase 87 61 Op 4 1/0.234 + CDS 105737 - 106759 720 ## COG0009 Putative translation factor (SUA5) 88 61 Op 5 5/0.032 + CDS 106799 - 108037 1138 ## COG0112 Glycine/serine hydroxymethyltransferase + Term 108148 - 108185 3.2 + Prom 108159 - 108218 7.7 89 62 Tu 1 . + CDS 108242 - 108871 711 ## COG0035 Uracil phosphoribosyltransferase + Term 108873 - 108926 0.1 + Prom 109078 - 109137 6.7 90 63 Op 1 . + CDS 109263 - 109985 483 ## COG0356 F0F1-type ATP synthase, subunit a 91 63 Op 2 . + CDS 110015 - 110227 425 ## LPST_C1969 F0F1 ATP synthase subunit C 92 63 Op 3 38/0.000 + CDS 110271 - 110780 651 ## COG0711 F0F1-type ATP synthase, subunit b 93 63 Op 4 41/0.000 + CDS 110777 - 111319 521 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 94 63 Op 5 42/0.000 + CDS 111347 - 112915 1442 ## COG0056 F0F1-type ATP synthase, alpha subunit 95 63 Op 6 42/0.000 + CDS 112938 - 113858 826 ## COG0224 F0F1-type ATP synthase, gamma subunit 96 63 Op 7 42/0.000 + CDS 113877 - 115322 1354 ## COG0055 F0F1-type ATP synthase, beta subunit 97 63 Op 8 . + CDS 115336 - 115755 346 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) + Term 115774 - 115819 7.4 + Prom 115773 - 115832 4.8 98 64 Op 1 . + CDS 116042 - 116272 125 ## Lbuc_0868 hypothetical protein 99 64 Op 2 1/0.234 + CDS 116289 - 117608 1148 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase + Term 117615 - 117663 5.0 + Prom 117711 - 117770 7.5 100 65 Op 1 . + CDS 117804 - 118805 1110 ## COG1077 Actin-like ATPase involved in cell morphogenesis 101 65 Op 2 . + CDS 118841 - 119101 190 ## COG0759 Uncharacterized conserved protein 102 65 Op 3 . + CDS 119121 - 119345 213 ## Lbuc_0872 hypothetical protein 103 65 Op 4 . + CDS 119376 - 120578 820 ## COG0772 Bacterial cell division membrane protein 104 65 Op 5 . + CDS 120594 - 120887 375 ## COG0509 Glycine cleavage system H protein (lipoate-binding) + Term 121096 - 121129 0.7 105 66 Op 1 32/0.000 + CDS 121258 - 122292 864 ## COG1135 ABC-type metal ion transport system, ATPase component 106 66 Op 2 22/0.000 + CDS 122285 - 122980 636 ## COG2011 ABC-type metal ion transport system, permease component 107 66 Op 3 . + CDS 123003 - 123830 795 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 108 66 Op 4 . + CDS 123912 - 124781 666 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs + Term 124812 - 124858 8.4 + Prom 124788 - 124847 5.8 109 67 Op 1 36/0.000 + CDS 124921 - 125673 293 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 110 67 Op 2 . + CDS 125688 - 127511 1267 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 111 67 Op 3 8/0.011 + CDS 127520 - 127906 307 ## COG1725 Predicted transcriptional regulators 112 67 Op 4 . + CDS 127903 - 128781 633 ## COG1131 ABC-type multidrug transport system, ATPase component 113 67 Op 5 . + CDS 128771 - 129541 503 ## Lbuc_0883 ABC transporter permease + Prom 129654 - 129713 11.4 114 68 Op 1 . + CDS 129744 - 130871 1011 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes + Prom 130879 - 130938 3.8 115 68 Op 2 . + CDS 130971 - 132488 562 ## COG0584 Glycerophosphoryl diester phosphodiesterase 116 68 Op 3 . + CDS 132522 - 133064 225 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) + Prom 133085 - 133144 9.2 117 68 Op 4 . + CDS 133181 - 134104 583 ## Lbuc_0887 helix-turn-helix domain-containing protein + Term 134132 - 134199 24.2 - Term 134126 - 134177 13.1 118 69 Op 1 . - CDS 134222 - 134704 458 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 134724 - 134783 5.7 119 69 Op 2 . - CDS 134787 - 135074 270 ## Lbuc_0889 hypothetical protein 120 69 Op 3 . - CDS 135096 - 136370 1048 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase - Prom 136395 - 136454 1.5 - Term 136406 - 136441 4.2 121 70 Tu 1 3/0.117 - CDS 136458 - 137153 1174 ## PROTEIN SUPPORTED gi|227510162|ref|ZP_03940211.1| 30S ribosomal protein S4 - Prom 137201 - 137260 3.7 122 71 Tu 1 . - CDS 137268 - 137741 304 ## PROTEIN SUPPORTED gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 - Prom 137809 - 137868 5.5 + Prom 137729 - 137788 6.8 123 72 Tu 1 . + CDS 137983 - 139641 1140 ## COG4477 Negative regulator of septation ring formation + Term 139659 - 139713 13.4 + Prom 139721 - 139780 6.8 124 73 Op 1 7/0.011 + CDS 139815 - 140960 1078 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 125 73 Op 2 . + CDS 140970 - 142187 987 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase + Prom 142189 - 142248 5.0 126 73 Op 3 . + CDS 142276 - 142785 410 ## COG2077 Peroxiredoxin + Term 143008 - 143062 12.2 + Prom 142897 - 142956 3.6 127 74 Op 1 8/0.011 + CDS 143080 - 145761 2148 ## COG0525 Valyl-tRNA synthetase + Term 145788 - 145841 4.1 + Prom 145763 - 145822 4.5 128 74 Op 2 . + CDS 145852 - 147186 1025 ## COG0285 Folylpolyglutamate synthase + Prom 147239 - 147298 7.4 129 75 Op 1 22/0.000 + CDS 147332 - 148348 898 ## COG1077 Actin-like ATPase involved in cell morphogenesis 130 75 Op 2 . + CDS 148394 - 149263 664 ## COG1792 Cell shape-determining protein 131 75 Op 3 . + CDS 149279 - 149803 192 ## Lbuc_0901 rod shape-determining protein MreD 132 75 Op 4 22/0.000 + CDS 149819 - 150502 495 ## COG0850 Septum formation inhibitor 133 75 Op 5 . + CDS 150495 - 151301 716 ## COG2894 Septum formation inhibitor-activating ATPase 134 75 Op 6 . + CDS 151370 - 151513 71 ## + Term 151586 - 151623 7.3 + Prom 151583 - 151642 3.4 135 76 Op 1 34/0.000 + CDS 151748 - 152392 406 ## COG0765 ABC-type amino acid transport system, permease component 136 76 Op 2 16/0.000 + CDS 152405 - 153040 399 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 137 76 Op 3 . + CDS 153055 - 153906 682 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 153927 - 153969 7.3 + Prom 153948 - 154007 5.1 138 77 Op 1 14/0.000 + CDS 154032 - 155312 810 ## COG0612 Predicted Zn-dependent peptidases 139 77 Op 2 3/0.117 + CDS 155299 - 156579 940 ## COG0612 Predicted Zn-dependent peptidases + Prom 156585 - 156644 1.6 140 78 Op 1 5/0.032 + CDS 156664 - 157746 986 ## COG1426 Uncharacterized protein conserved in bacteria 141 78 Op 2 6/0.011 + CDS 157771 - 158352 437 ## COG0558 Phosphatidylglycerophosphate synthase + Term 158368 - 158416 10.2 + Prom 158384 - 158443 4.7 142 79 Op 1 12/0.011 + CDS 158607 - 159083 237 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase + Prom 159085 - 159144 5.1 143 79 Op 2 4/0.074 + CDS 159180 - 160322 1201 ## COG0468 RecA/RadA recombinase + Prom 160530 - 160589 6.2 144 80 Op 1 2/0.160 + CDS 160628 - 162211 1432 ## COG1418 Predicted HD superfamily hydrolase + Term 162214 - 162242 -0.9 + Prom 162218 - 162277 3.8 145 80 Op 2 . + CDS 162300 - 163100 704 ## COG1692 Uncharacterized protein conserved in bacteria + Prom 163128 - 163187 3.5 146 81 Op 1 6/0.011 + CDS 163210 - 165798 1829 ## COG0249 Mismatch repair ATPase (MutS family) 147 81 Op 2 1/0.234 + CDS 165809 - 167755 1160 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 148 81 Op 3 29/0.000 + CDS 167831 - 168427 617 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 149 81 Op 4 4/0.074 + CDS 168441 - 169460 876 ## COG2255 Holliday junction resolvasome, helicase subunit 150 81 Op 5 17/0.000 + CDS 169457 - 170515 797 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) 151 81 Op 6 15/0.000 + CDS 170535 - 171677 863 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase + Prom 171706 - 171765 2.9 152 81 Op 7 . + CDS 171802 - 172155 341 ## COG1862 Preprotein translocase subunit YajC + Term 172164 - 172207 7.0 153 82 Tu 1 . + CDS 172254 - 173342 779 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair + Prom 173360 - 173419 2.6 154 83 Op 1 . + CDS 173513 - 174460 762 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B 155 83 Op 2 1/0.234 + CDS 174469 - 175830 1119 ## COG0513 Superfamily II DNA and RNA helicases + Prom 175844 - 175903 6.6 156 84 Tu 1 . + CDS 176099 - 178741 2233 ## COG0013 Alanyl-tRNA synthetase + Prom 178761 - 178820 7.1 157 85 Op 1 6/0.011 + CDS 178850 - 179131 361 ## COG4472 Uncharacterized protein conserved in bacteria 158 85 Op 2 7/0.011 + CDS 179137 - 179562 401 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 159 85 Op 3 . + CDS 179575 - 179901 356 ## COG3906 Uncharacterized protein conserved in bacteria + Term 179930 - 179977 8.5 + Prom 179904 - 179963 1.6 160 86 Op 1 . + CDS 179995 - 180261 300 ## Lbuc_0929 hypothetical protein 161 86 Op 2 3/0.117 + CDS 180281 - 180787 313 ## COG1286 Uncharacterized membrane protein, required for colicin V production 162 86 Op 3 3/0.117 + CDS 180784 - 183150 2191 ## COG1193 Mismatch repair ATPase (MutS family) + Prom 183160 - 183219 6.0 163 86 Op 4 . + CDS 183242 - 183553 323 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 183584 - 183637 6.1 - Term 183578 - 183612 -0.1 164 87 Tu 1 . - CDS 183653 - 184165 356 ## Lbuc_0934 hypothetical protein - Prom 184202 - 184261 8.4 + Prom 184211 - 184270 9.5 165 88 Op 1 . + CDS 184295 - 185113 404 ## COG0796 Glutamate racemase 166 88 Op 2 . + CDS 185110 - 185709 375 ## PROTEIN SUPPORTED gi|90023287|ref|YP_529114.1| ribosomal protein L33 + Term 185764 - 185826 2.7 + Prom 185725 - 185784 2.6 167 89 Op 1 3/0.117 + CDS 185847 - 186215 320 ## COG0622 Predicted phosphoesterase 168 89 Op 2 . + CDS 186243 - 186743 432 ## COG0517 FOG: CBS domain 169 90 Tu 1 . - CDS 188391 - 189248 670 ## COG0668 Small-conductance mechanosensitive channel - Prom 189351 - 189410 7.0 + Prom 189202 - 189261 7.3 170 91 Op 1 . + CDS 189433 - 189849 389 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain 171 91 Op 2 . + CDS 189877 - 190380 544 ## Lbuc_0941 hypothetical protein + Term 190403 - 190451 5.1 - Term 190391 - 190437 1.3 172 92 Tu 1 . - CDS 190455 - 191552 1001 ## COG0006 Xaa-Pro aminopeptidase - Prom 191737 - 191796 7.7 + Prom 191660 - 191719 7.4 173 93 Op 1 . + CDS 191772 - 192773 920 ## COG1609 Transcriptional regulators + Prom 192895 - 192954 4.3 174 93 Op 2 . + CDS 192999 - 193733 767 ## COG0217 Uncharacterized conserved protein + Term 193770 - 193813 9.6 + Prom 193768 - 193827 5.6 175 94 Op 1 24/0.000 + CDS 193861 - 194832 552 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 176 94 Op 2 . + CDS 194762 - 195823 364 ## COG1459 Type II secretory pathway, component PulF 177 94 Op 3 . + CDS 195847 - 196149 198 ## Lbuc_0947 competence protein ComGC 178 94 Op 4 . + CDS 196136 - 196576 296 ## Lbuc_0948 hypothetical protein + Prom 196594 - 196653 7.0 179 95 Op 1 . + CDS 196735 - 197160 295 ## Lbuc_0950 hypothetical protein 180 95 Op 2 . + CDS 197096 - 197365 128 ## gi|227524364|ref|ZP_03954413.1| hypothetical protein HMPREF0519_2073 + Prom 197368 - 197427 3.8 181 96 Op 1 7/0.011 + CDS 197449 - 198462 759 ## COG0827 Adenine-specific DNA methylase 182 96 Op 2 . + CDS 198485 - 199675 1251 ## COG0282 Acetate kinase + Term 199766 - 199815 12.1 + Prom 199700 - 199759 3.7 183 97 Tu 1 . + CDS 199862 - 201238 895 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 201250 - 201308 14.2 + Prom 201255 - 201314 6.0 184 98 Op 1 . + CDS 201378 - 201986 426 ## COG4186 Predicted phosphoesterase or phosphohydrolase 185 98 Op 2 2/0.160 + CDS 201998 - 203389 886 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 186 98 Op 3 1/0.234 + CDS 203403 - 203975 432 ## COG4470 Uncharacterized protein conserved in bacteria 187 98 Op 4 3/0.117 + CDS 203995 - 204768 698 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 188 98 Op 5 . + CDS 204782 - 205435 180 ## COG4478 Predicted membrane protein 189 99 Tu 1 . - CDS 205389 - 205577 294 ## Lbuc_0959 phage shock protein C, PspC - Prom 205702 - 205761 5.0 + Prom 205603 - 205662 7.0 190 100 Tu 1 . + CDS 205696 - 205947 252 ## Lbuc_0960 hypothetical protein 191 101 Tu 1 . + CDS 206056 - 207246 708 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase - Term 207315 - 207355 4.1 192 102 Tu 1 . - CDS 207375 - 208004 552 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) - Prom 208080 - 208139 7.0 + Prom 207919 - 207978 7.5 193 103 Tu 1 . + CDS 208131 - 208415 360 ## Lbuc_0963 hypothetical protein + Prom 208432 - 208491 9.2 194 104 Tu 1 . + CDS 208517 - 208741 145 ## COG3763 Uncharacterized protein conserved in bacteria + Term 208845 - 208882 -0.9 195 105 Tu 1 . - CDS 208829 - 209479 409 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase - Prom 209567 - 209626 5.2 196 106 Op 1 6/0.011 + CDS 209563 - 210315 503 ## COG4123 Predicted O-methyltransferase 197 106 Op 2 . + CDS 210299 - 210571 228 ## COG2827 Predicted endonuclease containing a URI domain + Prom 210585 - 210644 7.2 198 106 Op 3 . + CDS 210667 - 211665 953 ## COG1052 Lactate dehydrogenase and related dehydrogenases + Term 211692 - 211737 8.2 - Term 211678 - 211723 8.2 199 107 Tu 1 . - CDS 211774 - 212499 479 ## COG1011 Predicted hydrolase (HAD superfamily) - Prom 212520 - 212579 7.5 + Prom 212516 - 212575 7.4 200 108 Op 1 38/0.000 + CDS 212741 - 213547 1365 ## PROTEIN SUPPORTED gi|227510241|ref|ZP_03940290.1| ribosomal protein S2 201 108 Op 2 24/0.000 + CDS 213636 - 214514 551 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts + Term 214523 - 214574 11.8 + Prom 214644 - 214703 5.8 202 109 Op 1 33/0.000 + CDS 214730 - 215452 731 ## COG0528 Uridylate kinase 203 109 Op 2 . + CDS 215455 - 216018 594 ## COG0233 Ribosome recycling factor 204 109 Op 3 . + CDS 216034 - 216477 390 ## Lbuc_0976 hypothetical protein + Term 216495 - 216530 1.0 205 110 Op 1 . + CDS 216552 - 216689 69 ## gi|227513175|ref|ZP_03943224.1| di-trans-poly-cis-decaprenylcistransferase (undecaprenyl diphosphate synthetase) 206 110 Op 2 32/0.000 + CDS 216634 - 217317 395 ## COG0020 Undecaprenyl pyrophosphate synthase 207 110 Op 3 12/0.011 + CDS 217334 - 218122 464 ## COG0575 CDP-diglyceride synthetase + Prom 218124 - 218183 4.2 208 111 Op 1 7/0.011 + CDS 218223 - 219422 813 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 209 111 Op 2 5/0.032 + CDS 219490 - 221199 1412 ## COG0442 Prolyl-tRNA synthetase + Term 221248 - 221300 5.8 210 112 Tu 1 . + CDS 221315 - 225637 2843 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) + Term 225780 - 225814 4.0 + Prom 225704 - 225763 10.1 211 113 Op 1 32/0.000 + CDS 225834 - 226307 256 ## COG0779 Uncharacterized protein conserved in bacteria 212 113 Op 2 22/0.000 + CDS 226325 - 227659 795 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 213 113 Op 3 8/0.011 + CDS 227679 - 227978 343 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 214 113 Op 4 10/0.011 + CDS 227968 - 228285 525 ## PROTEIN SUPPORTED gi|227510254|ref|ZP_03940303.1| 50S ribosomal protein L7AE 215 113 Op 5 32/0.000 + CDS 228290 - 230806 2414 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 216 113 Op 6 26/0.000 + CDS 230874 - 231224 445 ## COG0858 Ribosome-binding factor A + Term 231245 - 231287 3.5 + Prom 231238 - 231297 4.9 217 113 Op 7 12/0.011 + CDS 231321 - 232232 589 ## COG0130 Pseudouridine synthase 218 113 Op 8 . + CDS 232250 - 233206 525 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 + Term 233236 - 233293 -0.6 + Prom 233320 - 233379 5.7 219 114 Op 1 21/0.000 + CDS 233539 - 234369 756 ## COG1420 Transcriptional regulator of heat shock gene 220 114 Op 2 29/0.000 + CDS 234388 - 235008 512 ## COG0576 Molecular chaperone GrpE (heat shock protein) 221 114 Op 3 31/0.000 + CDS 235035 - 236921 1774 ## COG0443 Molecular chaperone + Term 236947 - 236981 3.1 + Prom 236939 - 236998 6.8 222 114 Op 4 . + CDS 237029 - 238174 867 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain + Term 238227 - 238282 10.0 - Term 238062 - 238094 -0.1 223 115 Tu 1 . - CDS 238214 - 238411 81 ## + Prom 238301 - 238360 4.3 224 116 Tu 1 . + CDS 238385 - 240223 1296 ## COG0481 Membrane GTPase LepA + Term 240329 - 240368 2.1 - Term 240213 - 240253 0.7 225 117 Tu 1 . - CDS 240294 - 240395 82 ## - Prom 240487 - 240546 4.3 - Term 240527 - 240581 4.1 226 118 Tu 1 . - CDS 240597 - 241031 374 ## Lbuc_0995 hypothetical protein - Prom 241133 - 241192 4.5 - Term 241151 - 241193 0.2 227 119 Tu 1 . - CDS 241365 - 241760 293 ## Lbuc_0996 hypothetical protein - Prom 241818 - 241877 7.4 + Prom 241823 - 241882 8.9 228 120 Op 1 . + CDS 242109 - 242387 119 ## Lbuc_0997 hypothetical protein 229 120 Op 2 9/0.011 + CDS 242437 - 243399 1648 ## PROTEIN SUPPORTED gi|227510268|ref|ZP_03940317.1| ribosomal protein L11 methyltransferase 230 120 Op 3 . + CDS 243399 - 244145 398 ## COG1385 Uncharacterized protein conserved in bacteria + Prom 244152 - 244211 2.0 231 121 Op 1 7/0.011 + CDS 244282 - 246513 1699 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 232 121 Op 2 . + CDS 246526 - 246972 298 ## COG1490 D-Tyr-tRNAtyr deacylase + Term 247011 - 247048 3.9 + Prom 246974 - 247033 4.1 233 121 Op 3 . + CDS 247057 - 247698 502 ## COG0546 Predicted phosphatases + Term 247719 - 247766 10.2 - Term 247707 - 247752 10.6 234 122 Op 1 . - CDS 247771 - 248613 740 ## COG3001 Fructosamine-3-kinase 235 122 Op 2 . - CDS 248627 - 249469 622 ## COG0860 N-acetylmuramoyl-L-alanine amidase - Prom 249495 - 249554 7.9 + Prom 249704 - 249763 2.9 236 123 Op 1 13/0.011 + CDS 249847 - 251139 1227 ## COG0124 Histidyl-tRNA synthetase 237 123 Op 2 3/0.117 + CDS 251155 - 252942 1738 ## COG0173 Aspartyl-tRNA synthetase + Term 252975 - 253030 6.0 + Prom 252945 - 253004 5.0 238 124 Tu 1 . + CDS 253112 - 253987 768 ## COG1284 Uncharacterized conserved protein + Prom 253996 - 254055 5.5 239 125 Op 1 2/0.160 + CDS 254171 - 255235 561 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 240 125 Op 2 2/0.160 + CDS 255312 - 256121 422 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component + Prom 256138 - 256197 6.3 241 126 Op 1 . + CDS 256219 - 257358 670 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 242 126 Op 2 . + CDS 257394 - 258275 789 ## COG0648 Endonuclease IV + Term 258342 - 258410 22.1 - Term 258328 - 258396 23.0 243 127 Tu 1 . - CDS 258460 - 259296 581 ## COG1806 Uncharacterized protein conserved in bacteria + Prom 259343 - 259402 8.2 244 128 Op 1 . + CDS 259475 - 259666 313 ## PROTEIN SUPPORTED gi|227510283|ref|ZP_03940332.1| 30S ribosomal protein S21 + Term 259682 - 259731 10.5 + Prom 259680 - 259739 6.3 245 128 Op 2 1/0.234 + CDS 259763 - 260212 351 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 + Prom 260235 - 260294 3.3 246 129 Op 1 17/0.000 + CDS 260333 - 261298 954 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 247 129 Op 2 11/0.011 + CDS 261322 - 261807 458 ## COG0319 Predicted metal-dependent hydrolase 248 129 Op 3 3/0.117 + CDS 261791 - 262186 320 ## COG0818 Diacylglycerol kinase 249 129 Op 4 16/0.000 + CDS 262199 - 263101 886 ## COG1159 GTPase + Prom 263122 - 263181 4.8 250 129 Op 5 3/0.117 + CDS 263201 - 263962 503 ## COG1381 Recombinational DNA repair protein (RecF pathway) + Prom 264025 - 264084 2.6 251 130 Op 1 19/0.000 + CDS 264255 - 265184 761 ## COG0752 Glycyl-tRNA synthetase, alpha subunit 252 130 Op 2 . + CDS 265184 - 267265 1970 ## COG0751 Glycyl-tRNA synthetase, beta subunit + Term 267346 - 267382 5.7 + Prom 267414 - 267473 3.7 253 131 Op 1 31/0.000 + CDS 267630 - 269234 1031 ## COG0358 DNA primase (bacterial type) 254 131 Op 2 5/0.032 + CDS 269252 - 270421 1091 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) + Term 270439 - 270491 13.1 + Prom 270452 - 270511 5.0 255 132 Op 1 9/0.011 + CDS 270534 - 271238 597 ## COG2384 Predicted SAM-dependent methyltransferase 256 132 Op 2 . + CDS 271228 - 272343 790 ## COG0327 Uncharacterized conserved protein 257 132 Op 3 . + CDS 272372 - 273610 1265 ## COG2195 Di- and tripeptidases + Term 273670 - 273718 5.7 + Prom 273675 - 273734 4.2 258 133 Op 1 . + CDS 273758 - 276367 1642 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 259 133 Op 2 . + CDS 276380 - 277261 433 ## COG2267 Lysophospholipase + Term 277317 - 277366 12.3 - Term 277307 - 277352 2.1 260 134 Tu 1 . - CDS 277375 - 277566 211 ## gi|227510299|ref|ZP_03940348.1| conserved hypothetical protein - Prom 277588 - 277647 7.5 261 135 Tu 1 . + CDS 277698 - 281048 2499 ## COG0587 DNA polymerase III, alpha subunit + Prom 281131 - 281190 4.0 262 136 Tu 1 . + CDS 281279 - 283036 1685 ## COG0469 Pyruvate kinase + Term 283074 - 283117 6.3 + Prom 283147 - 283206 4.5 263 137 Op 1 . + CDS 283229 - 284101 509 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains 264 137 Op 2 . + CDS 284103 - 284990 593 ## COG4974 Site-specific recombinase XerD 265 137 Op 3 . + CDS 285007 - 285375 262 ## Lbuc_1033 RibT protein 266 137 Op 4 21/0.000 + CDS 285362 - 286114 463 ## COG1354 Uncharacterized conserved protein 267 137 Op 5 12/0.011 + CDS 286101 - 286703 499 ## COG1386 Predicted transcriptional regulator containing the HTH domain 268 137 Op 6 . + CDS 286696 - 287421 604 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Term 287606 - 287640 3.5 + Prom 287423 - 287482 5.0 269 138 Tu 1 . + CDS 287669 - 288253 512 ## COG3601 Predicted membrane protein + Term 288338 - 288377 5.9 270 139 Tu 1 . - CDS 288270 - 288455 63 ## - Prom 288643 - 288702 3.2 + Prom 288257 - 288316 12.6 271 140 Op 1 4/0.074 + CDS 288391 - 289440 687 ## COG4955 Uncharacterized protein conserved in bacteria 272 140 Op 2 . + CDS 289460 - 290914 694 ## COG0514 Superfamily II DNA helicase + Term 290923 - 290964 -1.0 273 140 Op 3 . + CDS 290979 - 291653 502 ## Lbuc_1040 peptidoglycan-binding lysin domain-containing protein + Prom 291668 - 291727 5.8 274 141 Op 1 21/0.000 + CDS 291792 - 292475 227 ## PROTEIN SUPPORTED gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 275 141 Op 2 3/0.117 + CDS 292552 - 293793 2069 ## PROTEIN SUPPORTED gi|227510313|ref|ZP_03940362.1| 30S ribosomal protein S1 + Term 293817 - 293875 12.0 + Prom 293818 - 293877 3.5 276 142 Tu 1 . + CDS 293900 - 295207 1251 ## COG1160 Predicted GTPases + Prom 295324 - 295383 5.6 277 143 Op 1 . + CDS 295589 - 295864 176 ## PROTEIN SUPPORTED gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 278 143 Op 2 . + CDS 295941 - 297209 1139 ## COG0457 FOG: TPR repeat + Term 297313 - 297378 16.2 - Term 297381 - 297424 2.3 279 144 Tu 1 . - CDS 297443 - 298333 822 ## COG1284 Uncharacterized conserved protein - Prom 298488 - 298547 6.2 + Prom 298416 - 298475 4.3 280 145 Op 1 4/0.074 + CDS 298498 - 299715 867 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 281 145 Op 2 1/0.234 + CDS 299723 - 301636 1620 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 282 145 Op 3 16/0.000 + CDS 301655 - 302605 671 ## COG0207 Thymidylate synthase 283 145 Op 4 1/0.234 + CDS 302647 - 303135 401 ## COG0262 Dihydrofolate reductase + Prom 303155 - 303214 8.3 284 146 Tu 1 . + CDS 303242 - 304090 640 ## COG1307 Uncharacterized protein conserved in bacteria + Prom 304112 - 304171 3.9 285 147 Op 1 3/0.117 + CDS 304202 - 305113 588 ## COG2755 Lysophospholipase L1 and related esterases 286 147 Op 2 . + CDS 305170 - 305748 359 ## COG4698 Uncharacterized protein conserved in bacteria 287 147 Op 3 . + CDS 305750 - 305968 201 ## COG4479 Uncharacterized protein conserved in bacteria 288 147 Op 4 8/0.011 + CDS 305982 - 306854 717 ## COG1161 Predicted GTPases 289 147 Op 5 2/0.160 + CDS 306835 - 307602 690 ## COG0164 Ribonuclease HII 290 147 Op 6 13/0.011 + CDS 307651 - 308526 373 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake + Prom 308542 - 308601 2.5 291 147 Op 7 . + CDS 308623 - 310755 1289 ## COG0550 Topoisomerase IA + Term 310767 - 310821 13.6 + Prom 310824 - 310883 5.5 292 148 Tu 1 . + CDS 310906 - 312327 1147 ## COG4690 Dipeptidase + Term 312545 - 312595 1.3 - Term 312316 - 312383 13.3 293 149 Tu 1 . - CDS 312393 - 313832 1387 ## COG4690 Dipeptidase - Prom 313937 - 313996 6.5 + Prom 313911 - 313970 8.7 294 150 Tu 1 . + CDS 313997 - 314185 291 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog + Prom 314327 - 314386 4.1 295 151 Tu 1 . + CDS 314432 - 315943 1351 ## COG0554 Glycerol kinase + Term 315975 - 316021 -0.4 - Term 315961 - 316009 7.2 296 152 Tu 1 . - CDS 316033 - 316839 670 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 317060 - 317119 5.8 + Prom 316825 - 316884 7.7 297 153 Tu 1 . + CDS 317039 - 318442 754 ## COG0144 tRNA and rRNA cytosine-C5-methylases + Term 318468 - 318517 7.2 - Term 318458 - 318502 4.6 298 154 Tu 1 . - CDS 318524 - 319285 506 ## COG3022 Uncharacterized protein conserved in bacteria - Prom 319346 - 319405 5.6 - Term 319408 - 319458 10.4 299 155 Op 1 3/0.117 - CDS 319473 - 320504 869 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases 300 155 Op 2 5/0.032 - CDS 320501 - 321592 686 ## COG1577 Mevalonate kinase 301 155 Op 3 5/0.032 - CDS 321613 - 322599 626 ## COG3407 Mevalonate pyrophosphate decarboxylase 302 155 Op 4 . - CDS 322580 - 323557 648 ## COG1577 Mevalonate kinase - Prom 323700 - 323759 7.7 + Prom 323584 - 323643 9.5 303 156 Tu 1 . + CDS 323874 - 326711 1725 ## COG1199 Rad3-related DNA helicases + Prom 326737 - 326796 6.3 304 157 Op 1 5/0.032 + CDS 326847 - 327353 488 ## COG5353 Uncharacterized protein conserved in bacteria 305 157 Op 2 5/0.032 + CDS 327380 - 328600 953 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 306 157 Op 3 4/0.074 + CDS 328602 - 329882 1185 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases 307 157 Op 4 . + CDS 329994 - 330638 508 ## COG3935 Putative primosome component and related proteins + Term 330650 - 330698 18.1 - Term 330642 - 330682 12.2 308 158 Op 1 . - CDS 330697 - 332922 1731 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 309 158 Op 2 . - CDS 333068 - 333667 485 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase - Prom 333733 - 333792 6.5 + Prom 333637 - 333696 7.1 310 159 Op 1 6/0.011 + CDS 333780 - 334364 311 ## COG4474 Uncharacterized protein conserved in bacteria 311 159 Op 2 3/0.117 + CDS 334421 - 334807 350 ## COG3599 Cell division initiation protein + Term 334889 - 334925 1.3 + Prom 335266 - 335325 4.7 312 160 Op 1 . + CDS 335467 - 336618 771 ## COG0116 Predicted N6-adenine-specific DNA methylase 313 160 Op 2 . + CDS 336678 - 337790 659 ## COG0665 Glycine/D-amino acid oxidases (deaminating) - Term 337630 - 337661 -1.0 314 161 Tu 1 . - CDS 337783 - 338172 464 ## COG0328 Ribonuclease HI - Prom 338384 - 338443 4.7 + Prom 338112 - 338171 4.5 315 162 Op 1 . + CDS 338210 - 338596 317 ## Lbuc_1081 hypothetical protein 316 162 Op 2 . + CDS 338640 - 340307 1640 ## COG2759 Formyltetrahydrofolate synthetase 317 162 Op 3 15/0.000 + CDS 340322 - 340762 227 ## COG0597 Lipoprotein signal peptidase 318 162 Op 4 4/0.074 + CDS 340781 - 341692 340 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit + Prom 341699 - 341758 2.9 319 163 Op 1 . + CDS 341783 - 342316 502 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase 320 163 Op 2 24/0.000 + CDS 342344 - 343435 709 ## COG0505 Carbamoylphosphate synthase small subunit 321 163 Op 3 . + CDS 343380 - 345926 1553 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) - Term 345946 - 345981 0.2 322 164 Tu 1 . - CDS 346005 - 347720 1163 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP - Prom 347748 - 347807 7.4 + Prom 347856 - 347915 5.7 323 165 Op 1 . + CDS 347935 - 348348 275 ## Lbuc_1089 regulatory protein MarR 324 165 Op 2 . + CDS 348366 - 349238 714 ## COG1307 Uncharacterized protein conserved in bacteria + Prom 349283 - 349342 6.9 325 166 Op 1 . + CDS 349526 - 350056 430 ## Lbuc_1092 hypothetical protein 326 166 Op 2 4/0.074 + CDS 350129 - 350476 325 ## COG1539 Dihydroneopterin aldolase 327 166 Op 3 2/0.160 + CDS 350476 - 351549 605 ## COG0302 GTP cyclohydrolase I 328 166 Op 4 1/0.234 + CDS 351533 - 352870 732 ## COG0285 Folylpolyglutamate synthase 329 166 Op 5 1/0.234 + CDS 352860 - 353954 652 ## COG0294 Dihydropteroate synthase and related enzymes 330 166 Op 6 . + CDS 353984 - 354523 312 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 331 166 Op 7 . + CDS 354610 - 355326 269 ## COG3741 N-formylglutamate amidohydrolase 332 166 Op 8 . + CDS 355381 - 355830 334 ## COG0456 Acetyltransferases + Prom 355852 - 355911 7.1 333 167 Tu 1 . + CDS 355934 - 356887 763 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases + Term 356922 - 356957 1.2 - Term 357034 - 357093 13.1 334 168 Tu 1 . - CDS 357136 - 357999 530 ## COG3475 LPS biosynthesis protein - Prom 358145 - 358204 6.5 + Prom 358259 - 358318 7.9 335 169 Op 1 . + CDS 358346 - 358522 98 ## gi|227510374|ref|ZP_03940423.1| conserved hypothetical protein 336 169 Op 2 . + CDS 358568 - 358927 189 ## DSY2789 hypothetical protein 337 169 Op 3 . + CDS 358970 - 360058 886 ## COG0582 Integrase 338 170 Tu 1 . - CDS 360086 - 361198 513 ## PROTEIN SUPPORTED gi|229845805|ref|ZP_04465917.1| 50S ribosomal protein L31 - Prom 361328 - 361387 9.5 + Prom 361192 - 361251 9.8 339 171 Op 1 . + CDS 361276 - 361644 206 ## Rumal_1506 VTC domain 340 171 Op 2 . + CDS 361662 - 362126 287 ## EUBELI_00770 hypothetical protein 341 171 Op 3 . + CDS 362107 - 362790 689 ## Sgly_0479 hypothetical protein + Term 362837 - 362875 5.1 - Term 362825 - 362863 3.2 342 172 Tu 1 . - CDS 362881 - 364779 1773 ## Krodi_0811 Spore coat protein CotH - Prom 364929 - 364988 5.7 - Term 364924 - 364980 7.1 343 173 Tu 1 . - CDS 365011 - 365745 266 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 - Prom 365785 - 365844 5.1 + Prom 365953 - 366012 5.8 344 174 Tu 1 . + CDS 366073 - 366345 78 ## gi|227513392|ref|ZP_03943441.1| hypothetical protein HMPREF0497_2514 - Term 366736 - 366793 -0.7 345 175 Op 1 . - CDS 366815 - 367405 543 ## COG4721 Predicted membrane protein 346 175 Op 2 . - CDS 367402 - 368121 546 ## COG0819 Putative transcription activator 347 175 Op 3 . - CDS 368124 - 369446 892 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases + Prom 369704 - 369763 6.8 348 176 Tu 1 . + CDS 369804 - 370373 182 ## COG3575 Uncharacterized protein conserved in bacteria + Term 370376 - 370417 1.6 - Term 370514 - 370556 3.3 349 177 Tu 1 . - CDS 370669 - 370902 63 ## 350 178 Op 1 . + CDS 370863 - 371438 535 ## Lbuc_0125 integral membrane protein 351 178 Op 2 . + CDS 371465 - 371701 199 ## PROTEIN SUPPORTED gi|163756262|ref|ZP_02163377.1| 50S ribosomal protein L20 + Term 371824 - 371879 14.1 - Term 371806 - 371872 20.2 352 179 Tu 1 . - CDS 371920 - 372861 844 ## COG1715 Restriction endonuclease - Prom 372891 - 372950 8.2 + Prom 372988 - 373047 8.9 353 180 Tu 1 . + CDS 373086 - 374825 1391 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] + Term 374897 - 374959 20.1 + Prom 375039 - 375098 10.2 354 181 Op 1 . + CDS 375228 - 375470 429 ## COG2261 Predicted membrane protein 355 181 Op 2 . + CDS 375488 - 375640 168 ## gi|227510394|ref|ZP_03940443.1| conserved hypothetical protein + Term 375687 - 375735 11.0 - Term 375675 - 375723 7.2 356 182 Tu 1 . - CDS 375729 - 376760 546 ## SH2075 hypothetical protein + Prom 377006 - 377065 5.9 357 183 Op 1 . + CDS 377152 - 377727 233 ## gi|227510396|ref|ZP_03940445.1| conserved hypothetical protein + Prom 377732 - 377791 2.4 358 183 Op 2 40/0.000 + CDS 377817 - 378512 649 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 359 183 Op 3 . + CDS 378523 - 379899 855 ## COG0642 Signal transduction histidine kinase - Term 379888 - 379961 7.0 360 184 Op 1 . - CDS 380014 - 380757 832 ## COG4221 Short-chain alcohol dehydrogenase of unknown specificity 361 184 Op 2 . - CDS 380741 - 381151 301 ## COG0789 Predicted transcriptional regulators - Prom 381234 - 381293 5.8 + Prom 381288 - 381347 7.0 362 185 Op 1 1/0.234 + CDS 381401 - 382342 791 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 363 185 Op 2 . + CDS 382353 - 383030 416 ## COG0671 Membrane-associated phospholipid phosphatase 364 185 Op 3 . + CDS 383036 - 385603 1078 ## COG4485 Predicted membrane protein + Term 385641 - 385691 10.4 - Term 385629 - 385679 3.6 365 186 Op 1 . - CDS 385737 - 386387 606 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases 366 186 Op 2 . - CDS 386442 - 387293 822 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 387455 - 387514 7.9 - Term 387442 - 387487 6.1 367 187 Tu 1 . - CDS 387526 - 388236 675 ## COG2013 Uncharacterized conserved protein - Prom 388394 - 388453 6.6 + Prom 388180 - 388239 4.5 368 188 Op 1 . + CDS 388434 - 388919 361 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 369 188 Op 2 . + CDS 389016 - 390359 672 ## COG0038 Chloride channel protein EriC + Term 390392 - 390447 15.2 - Term 390380 - 390433 11.0 370 189 Tu 1 . - CDS 390473 - 392401 1365 ## COG2217 Cation transport ATPase - Prom 392566 - 392625 6.5 + Prom 392338 - 392397 5.3 371 190 Tu 1 . + CDS 392498 - 392965 229 ## COG0640 Predicted transcriptional regulators + Term 392978 - 393032 2.2 - Term 392964 - 393018 2.2 372 191 Op 1 2/0.160 - CDS 393056 - 394984 1550 ## COG2217 Cation transport ATPase 373 191 Op 2 . - CDS 394996 - 395316 317 ## COG4633 Uncharacterized protein conserved in bacteria 374 191 Op 3 . - CDS 395345 - 395719 345 ## COG4633 Uncharacterized protein conserved in bacteria - Prom 395812 - 395871 5.2 + Prom 395912 - 395971 6.8 375 192 Tu 1 . + CDS 396010 - 396876 627 ## COG2207 AraC-type DNA-binding domain-containing proteins - Term 396862 - 396922 11.1 376 193 Op 1 . - CDS 396933 - 397610 432 ## COG3534 Alpha-L-arabinofuranosidase 377 193 Op 2 . - CDS 397445 - 398434 608 ## COG3534 Alpha-L-arabinofuranosidase 378 193 Op 3 . - CDS 398474 - 399844 1191 ## COG2211 Na+/melibiose symporter and related transporters 379 193 Op 4 . - CDS 399865 - 402231 2085 ## Pjdr2_1660 hypothetical protein - Prom 402458 - 402517 9.6 - Term 402560 - 402613 5.3 380 194 Op 1 . - CDS 402644 - 403675 623 ## COG1609 Transcriptional regulators 381 194 Op 2 . - CDS 403743 - 404003 224 ## gi|227510420|ref|ZP_03940469.1| conserved hypothetical protein 382 194 Op 3 3/0.117 - CDS 404006 - 404953 953 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 383 194 Op 4 . - CDS 404986 - 405768 856 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 384 194 Op 5 . - CDS 405787 - 406536 535 ## OEOE_1669 sugar phosphate isomerase/epimerase - Prom 406679 - 406738 5.7 + Prom 406696 - 406755 10.2 385 195 Tu 1 . + CDS 406817 - 408091 1014 ## LEGAS_0075 divalent ion symporter + Term 408149 - 408206 6.2 - Term 408130 - 408200 16.1 386 196 Tu 1 . - CDS 408222 - 409145 678 ## COG5585 NAD+--asparagine ADP-ribosyltransferase - Prom 409275 - 409334 8.2 - Term 409436 - 409467 1.1 387 197 Tu 1 . - CDS 409505 - 410494 616 ## Lbuc_0582 G-D-S-L family lipolytic protein - Prom 410686 - 410745 6.5 - Term 410799 - 410838 -1.0 388 198 Tu 1 . - CDS 410857 - 411474 615 ## Lbuc_2289 hypothetical protein - Prom 411723 - 411782 8.9 389 199 Tu 1 . + CDS 412035 - 413225 864 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 390 200 Tu 1 . - CDS 413352 - 414608 918 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 414678 - 414737 3.9 391 201 Tu 1 . + CDS 414898 - 415671 510 ## COG0500 SAM-dependent methyltransferases + Term 415683 - 415741 8.1 - Term 415667 - 415733 23.2 392 202 Op 1 5/0.032 - CDS 415745 - 416272 484 ## COG0225 Peptide methionine sulfoxide reductase 393 202 Op 2 . - CDS 416337 - 416768 284 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase - Prom 416814 - 416873 5.7 394 203 Op 1 . - CDS 416928 - 417857 924 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase 395 203 Op 2 . - CDS 417886 - 418845 753 ## COG0583 Transcriptional regulator - Prom 418986 - 419045 6.9 396 204 Op 1 24/0.000 - CDS 419050 - 421488 1768 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 397 204 Op 2 . - CDS 421510 - 423465 1802 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - Prom 423492 - 423551 7.8 + Prom 423514 - 423573 5.7 398 205 Tu 1 . + CDS 423644 - 424240 428 ## COG0344 Predicted membrane protein + Term 424343 - 424400 12.1 - Term 424338 - 424379 5.0 399 206 Op 1 . - CDS 424411 - 425283 738 ## COG2017 Galactose mutarotase and related enzymes 400 206 Op 2 24/0.000 - CDS 425306 - 426751 1273 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 401 206 Op 3 4/0.074 - CDS 426729 - 427271 572 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 402 206 Op 4 . - CDS 427283 - 428215 515 ## COG4974 Site-specific recombinase XerD - Prom 428275 - 428334 4.2 - Term 428368 - 428400 2.3 403 207 Op 1 33/0.000 - CDS 428415 - 428777 604 ## PROTEIN SUPPORTED gi|227510443|ref|ZP_03940492.1| 50S ribosomal protein L19 404 207 Op 2 30/0.000 - CDS 428870 - 429655 761 ## COG0336 tRNA-(guanine-N1)-methyltransferase 405 207 Op 3 12/0.011 - CDS 429645 - 430169 472 ## COG0806 RimM protein, required for 16S rRNA processing - Term 430185 - 430230 8.2 406 208 Op 1 19/0.000 - CDS 430235 - 430483 301 ## COG1837 Predicted RNA-binding protein (contains KH domain) 407 208 Op 2 23/0.000 - CDS 430501 - 430776 469 ## PROTEIN SUPPORTED gi|227510447|ref|ZP_03940496.1| 30S ribosomal protein S16 - Prom 430804 - 430863 5.6 408 208 Op 3 8/0.011 - CDS 430884 - 432320 1427 ## COG0541 Signal recognition particle GTPase 409 208 Op 4 7/0.011 - CDS 432334 - 432681 338 ## COG2739 Uncharacterized protein conserved in bacteria - Prom 432706 - 432765 3.0 410 209 Op 1 10/0.011 - CDS 432818 - 434269 915 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 411 209 Op 2 6/0.011 - CDS 434270 - 437746 2083 ## COG1196 Chromosome segregation ATPases 412 209 Op 3 7/0.011 - CDS 437836 - 438525 649 ## COG0571 dsRNA-specific ribonuclease 413 209 Op 4 3/0.117 - CDS 438606 - 438851 296 ## COG0236 Acyl carrier protein 414 209 Op 5 . - CDS 438900 - 439943 1098 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 415 209 Op 6 4/0.074 - CDS 439956 - 441986 1326 ## COG1200 RecG-like helicase - Prom 442033 - 442092 4.9 416 210 Op 1 9/0.011 - CDS 442149 - 443864 1557 ## COG1461 Predicted kinase related to dihydroxyacetone kinase 417 210 Op 2 . - CDS 443897 - 444262 509 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 444364 - 444423 6.1 + Prom 444231 - 444290 6.1 418 211 Tu 1 . + CDS 444489 - 444674 316 ## PROTEIN SUPPORTED gi|227510458|ref|ZP_03940507.1| ribosomal protein L28 + Term 444684 - 444712 -0.0 - Term 444712 - 444754 8.4 419 212 Tu 1 . - CDS 444845 - 445375 376 ## COG0778 Nitroreductase - Prom 445402 - 445461 5.1 - Term 445506 - 445546 4.4 420 213 Op 1 6/0.011 - CDS 445597 - 446259 650 ## COG1564 Thiamine pyrophosphokinase 421 213 Op 2 10/0.011 - CDS 446259 - 446912 767 ## COG0036 Pentose-5-phosphate-3-epimerase 422 213 Op 3 7/0.011 - CDS 446924 - 447817 431 ## COG1162 Predicted GTPases - Prom 447840 - 447899 5.6 - Term 447830 - 447881 6.2 423 214 Op 1 17/0.000 - CDS 447901 - 449970 1459 ## COG0515 Serine/threonine protein kinase 424 214 Op 2 3/0.117 - CDS 449963 - 450712 683 ## COG0631 Serine/threonine protein phosphatase 425 214 Op 3 20/0.000 - CDS 450728 - 452062 1007 ## COG0144 tRNA and rRNA cytosine-C5-methylases 426 214 Op 4 4/0.074 - CDS 452063 - 452989 841 ## COG0223 Methionyl-tRNA formyltransferase 427 214 Op 5 5/0.032 - CDS 453035 - 455431 1388 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase 428 214 Op 6 10/0.011 - CDS 455457 - 456683 1022 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase - Prom 456748 - 456807 8.4 - Term 456759 - 456803 6.2 429 215 Op 1 25/0.000 - CDS 456829 - 457041 288 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 430 215 Op 2 . - CDS 457044 - 457658 622 ## COG0194 Guanylate kinase - Prom 457715 - 457774 3.8 + Prom 457747 - 457806 8.5 431 216 Tu 1 . + CDS 457833 - 458150 192 ## Lbuc_1141 hypothetical protein + Term 458229 - 458283 10.9 - Term 458224 - 458262 5.3 432 217 Op 1 8/0.011 - CDS 458310 - 460004 1453 ## COG0497 ATPase involved in DNA repair 433 217 Op 2 6/0.011 - CDS 460045 - 460500 353 ## COG1438 Arginine repressor 434 217 Op 3 3/0.117 - CDS 460533 - 461348 635 ## COG1189 Predicted rRNA methylase 435 217 Op 4 . - CDS 461329 - 462243 595 ## COG0142 Geranylgeranyl pyrophosphate synthase 436 217 Op 5 . - CDS 462224 - 462490 346 ## Lbuc_1146 exodeoxyribonuclease 7 small subunit 437 217 Op 6 7/0.011 - CDS 462480 - 463763 815 ## COG1570 Exonuclease VII, large subunit 438 217 Op 7 4/0.074 - CDS 463828 - 464694 792 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase - Prom 464747 - 464806 7.1 439 218 Op 1 10/0.011 - CDS 464822 - 465235 245 ## COG0781 Transcription termination factor 440 218 Op 2 4/0.074 - CDS 465235 - 465669 486 ## COG1302 Uncharacterized protein conserved in bacteria 441 218 Op 3 . - CDS 465700 - 466260 674 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) - Prom 466414 - 466473 9.5 - Term 466428 - 466471 3.0 442 219 Op 1 14/0.000 - CDS 466491 - 466784 499 ## PROTEIN SUPPORTED gi|227510483|ref|ZP_03940532.1| ribosomal protein L27 443 219 Op 2 14/0.000 - CDS 466807 - 467142 560 ## PROTEIN SUPPORTED gi|227510484|ref|ZP_03940533.1| ribosomal protein 444 219 Op 3 . - CDS 467169 - 467477 520 ## PROTEIN SUPPORTED gi|227510485|ref|ZP_03940534.1| ribosomal protein L21 - Prom 467590 - 467649 8.5 + TRNA 468017 - 468090 83.7 # Arg TCT 0 0 - Term 468309 - 468361 11.5 445 220 Op 1 . - CDS 468365 - 468622 280 ## lp_0875 hypothetical protein - Prom 468731 - 468790 4.9 - Term 468824 - 468860 -0.7 446 220 Op 2 . - CDS 468904 - 469443 447 ## COG4508 Uncharacterized protein conserved in bacteria - Prom 469472 - 469531 6.2 - Term 469479 - 469529 8.2 447 221 Op 1 . - CDS 469594 - 470532 841 ## Lbuc_1156 hypothetical protein 448 221 Op 2 . - CDS 470522 - 471403 552 ## Lbuc_1157 hypothetical protein - Prom 471434 - 471493 8.7 - Term 471505 - 471551 11.2 449 222 Op 1 5/0.032 - CDS 471591 - 472934 1115 ## COG0174 Glutamine synthetase 450 222 Op 2 . - CDS 472949 - 473350 290 ## COG0789 Predicted transcriptional regulators - Prom 473370 - 473429 5.7 451 223 Op 1 . - CDS 473437 - 474288 631 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 452 223 Op 2 . - CDS 474357 - 475103 521 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Prom 475173 - 475232 4.3 + Prom 475078 - 475137 8.5 453 224 Tu 1 . + CDS 475210 - 475386 231 ## Lbuc_1163 hypothetical protein + Term 475421 - 475470 11.1 - Term 475409 - 475457 10.5 454 225 Op 1 2/0.160 - CDS 475481 - 475900 387 ## COG0607 Rhodanese-related sulfurtransferase 455 225 Op 2 5/0.032 - CDS 475943 - 476944 859 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase 456 225 Op 3 3/0.117 - CDS 476913 - 477137 184 ## COG4483 Uncharacterized protein conserved in bacteria 457 225 Op 4 4/0.074 - CDS 477184 - 477846 609 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 458 225 Op 5 . - CDS 477869 - 478417 326 ## COG0212 5-formyltetrahydrofolate cyclo-ligase - Prom 478548 - 478607 3.5 - Term 478459 - 478498 0.8 459 226 Tu 1 . - CDS 478619 - 478768 268 ## PROTEIN SUPPORTED gi|227510500|ref|ZP_03940549.1| 50S ribosomal protein L33 - Prom 478822 - 478881 4.3 460 227 Tu 1 . - CDS 478885 - 480942 1819 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 - Prom 481017 - 481076 5.9 + Prom 480809 - 480868 8.9 461 228 Tu 1 . + CDS 481070 - 483700 1441 ## COG4485 Predicted membrane protein + Term 483713 - 483768 7.5 - Term 483694 - 483762 12.1 462 229 Tu 1 . - CDS 483769 - 484080 475 ## COG4841 Uncharacterized protein conserved in bacteria - Prom 484120 - 484179 5.5 - Term 484151 - 484207 11.2 463 230 Op 1 4/0.074 - CDS 484216 - 484692 543 ## COG0782 Transcription elongation factor 464 230 Op 2 . - CDS 484717 - 485391 666 ## COG0572 Uridine kinase 465 230 Op 3 . - CDS 485421 - 486539 1007 ## COG1559 Predicted periplasmic solute-binding protein 466 230 Op 4 40/0.000 - CDS 486584 - 488995 2000 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 467 230 Op 5 1/0.234 - CDS 488999 - 490048 842 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit - Term 490229 - 490266 -0.8 468 231 Op 1 . - CDS 490391 - 490741 272 ## COG1733 Predicted transcriptional regulators 469 231 Op 2 1/0.234 - CDS 490791 - 491288 520 ## COG1418 Predicted HD superfamily hydrolase 470 231 Op 3 . - CDS 491360 - 492127 192 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 - Prom 492150 - 492209 9.9 + Prom 492095 - 492154 8.5 471 232 Op 1 2/0.160 + CDS 492184 - 492468 236 ## COG1254 Acylphosphatases + Prom 492476 - 492535 6.8 472 232 Op 2 . + CDS 492567 - 493598 785 ## COG0706 Preprotein translocase subunit YidC + Term 493620 - 493662 5.5 - Term 493608 - 493650 5.5 473 233 Op 1 40/0.000 - CDS 493654 - 495234 1065 ## COG0642 Signal transduction histidine kinase 474 233 Op 2 . - CDS 495231 - 495917 606 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 495961 - 496020 7.7 + Prom 495929 - 495988 8.6 475 234 Tu 1 . + CDS 496167 - 497183 919 ## COG1064 Zn-dependent alcohol dehydrogenases + Term 497220 - 497267 4.1 - Term 497398 - 497442 5.1 476 235 Op 1 . - CDS 497451 - 497624 297 ## PROTEIN SUPPORTED gi|227510517|ref|ZP_03940566.1| ribosomal protein L32 477 235 Op 2 . - CDS 497676 - 498209 298 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein - Prom 498251 - 498310 6.5 478 236 Op 1 3/0.117 - CDS 498314 - 499384 613 ## COG1323 Predicted nucleotidyltransferase 479 236 Op 2 6/0.011 - CDS 499449 - 500189 420 ## COG0500 SAM-dependent methyltransferases 480 236 Op 3 6/0.011 - CDS 500186 - 500542 477 ## COG0799 Uncharacterized homolog of plant Iojap protein 481 236 Op 4 9/0.011 - CDS 500553 - 501164 545 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 482 236 Op 5 7/0.011 - CDS 501154 - 501786 524 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 483 236 Op 6 2/0.160 - CDS 501808 - 502119 243 ## PROTEIN SUPPORTED gi|170016752|ref|YP_001727671.1| RNA-binding protein 484 236 Op 7 6/0.011 - CDS 502138 - 503274 819 ## COG1161 Predicted GTPases 485 236 Op 8 . - CDS 503284 - 503799 281 ## COG2179 Predicted hydrolase of the HAD superfamily - Prom 503821 - 503880 5.6 - Term 503827 - 503863 3.3 486 237 Op 1 . - CDS 503884 - 504240 592 ## PROTEIN SUPPORTED gi|227510527|ref|ZP_03940576.1| ribosomal protein L20 487 237 Op 2 . - CDS 504304 - 504498 337 ## PROTEIN SUPPORTED gi|227510528|ref|ZP_03940577.1| ribosomal protein L35 488 237 Op 3 16/0.000 - CDS 504529 - 505038 395 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 - Prom 505208 - 505267 4.5 - Term 505076 - 505114 8.3 489 237 Op 4 2/0.160 - CDS 505269 - 507212 1747 ## COG0441 Threonyl-tRNA synthetase 490 238 Op 1 8/0.011 - CDS 507545 - 508483 933 ## COG1484 DNA replication protein 491 238 Op 2 6/0.011 - CDS 508483 - 509928 973 ## COG3611 Replication initiation/membrane attachment protein 492 238 Op 3 1/0.234 - CDS 509928 - 510422 474 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 493 238 Op 4 4/0.074 - CDS 510434 - 511027 287 ## COG0237 Dephospho-CoA kinase 494 238 Op 5 4/0.074 - CDS 511020 - 511862 606 ## COG0266 Formamidopyrimidine-DNA glycosylase - Prom 511887 - 511946 5.4 495 238 Op 6 . - CDS 511957 - 514608 1993 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains - Prom 514635 - 514694 7.0 - Term 514691 - 514724 4.5 496 239 Tu 1 . - CDS 514745 - 515452 715 ## COG0670 Integral membrane protein, interacts with FtsH - Prom 515536 - 515595 5.3 - Term 515540 - 515598 10.5 497 240 Op 1 3/0.117 - CDS 515608 - 516939 1199 ## COG0773 UDP-N-acetylmuramate-alanine ligase 498 240 Op 2 3/0.117 - CDS 516972 - 519287 1484 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 499 240 Op 3 2/0.160 - CDS 519314 - 519955 536 ## COG0073 EMAP domain 500 240 Op 4 . - CDS 519980 - 520303 319 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 520345 - 520404 4.8 + Prom 520366 - 520425 7.0 501 241 Tu 1 . + CDS 520456 - 520785 290 ## gi|227510543|ref|ZP_03940592.1| hypothetical protein HMPREF0496_2706 + Term 520856 - 520919 2.3 502 242 Op 1 . - CDS 520770 - 521489 349 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 503 242 Op 2 7/0.011 - CDS 521449 - 522672 731 ## COG4473 Predicted ABC-type exoprotein transport system, permease component 504 242 Op 3 . - CDS 522669 - 523406 262 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 - Prom 523461 - 523520 8.8 + Prom 523386 - 523445 7.1 505 243 Op 1 . + CDS 523523 - 523987 387 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 506 243 Op 2 . + CDS 523990 - 524301 344 ## Lbuc_1228 hypothetical protein + Prom 524303 - 524362 3.4 507 244 Tu 1 . + CDS 524429 - 525310 860 ## COG0760 Parvulin-like peptidyl-prolyl isomerase + Term 525336 - 525375 4.1 - Term 525323 - 525362 4.1 508 245 Op 1 3/0.117 - CDS 525374 - 526363 976 ## COG3481 Predicted HD-superfamily hydrolase 509 245 Op 2 5/0.032 - CDS 526378 - 528924 1276 ## COG4717 Uncharacterized conserved protein 510 245 Op 3 2/0.160 - CDS 528924 - 530147 601 ## COG0420 DNA repair exonuclease - Term 530175 - 530226 12.1 511 246 Op 1 . - CDS 530229 - 530573 370 ## COG3679 Uncharacterized conserved protein 512 246 Op 2 . - CDS 530641 - 532734 1646 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 532872 - 532931 4.2 - Term 532813 - 532852 1.0 513 247 Tu 1 . - CDS 532945 - 534636 1428 ## COG0018 Arginyl-tRNA synthetase - Prom 534718 - 534777 4.4 - TRNA 534952 - 535022 59.8 # Gly CCC 0 0 + Prom 535002 - 535061 7.1 514 248 Tu 1 . + CDS 535162 - 535500 227 ## Lbuc_1237 hypothetical protein - Term 535475 - 535511 6.6 515 249 Op 1 1/0.234 - CDS 535580 - 536308 644 ## COG1794 Aspartate racemase 516 249 Op 2 . - CDS 536322 - 537572 802 ## COG3919 Predicted ATP-grasp enzyme 517 249 Op 3 . - CDS 537579 - 539114 1082 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 518 249 Op 4 . - CDS 539143 - 541023 1506 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) - Prom 541082 - 541141 5.1 + Prom 541075 - 541134 6.7 519 250 Tu 1 . + CDS 541246 - 541494 230 ## Lbuc_1242 hypothetical protein + Term 541529 - 541585 16.1 - Term 541517 - 541573 16.1 520 251 Tu 1 . - CDS 541628 - 542068 452 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 542108 - 542167 9.8 521 252 Tu 1 . + CDS 542398 - 542712 275 ## LGG_00710 membrane protein + Term 542723 - 542774 10.0 - TRNA 542858 - 542941 56.2 # Leu CAG 0 0 - Term 542779 - 542824 5.1 522 253 Tu 1 . - CDS 542968 - 543666 419 ## Lbuc_1245 integral membrane protein - Prom 543716 - 543775 10.9 + Prom 543710 - 543769 9.2 523 254 Tu 1 . + CDS 543797 - 544249 328 ## COG1846 Transcriptional regulators + Term 544388 - 544429 -0.6 524 255 Tu 1 . - CDS 544362 - 545864 1224 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 545886 - 545945 6.4 - Term 545902 - 545948 8.4 525 256 Op 1 1/0.234 - CDS 546051 - 546803 462 ## COG2367 Beta-lactamase class A 526 256 Op 2 3/0.117 - CDS 546800 - 547576 598 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - Prom 547815 - 547874 8.5 - Term 547884 - 547919 0.1 527 257 Op 1 . - CDS 547982 - 549067 702 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 528 257 Op 2 . - CDS 549082 - 550701 1400 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 550763 - 550822 9.9 529 258 Op 1 . - CDS 550829 - 551380 441 ## COG4990 Uncharacterized protein conserved in bacteria 530 258 Op 2 . - CDS 551377 - 552486 837 ## COG3191 L-aminopeptidase/D-esterase 531 258 Op 3 . - CDS 552507 - 553214 667 ## COG1266 Predicted metal-dependent membrane protease 532 258 Op 4 . - CDS 553232 - 555091 1451 ## COG4934 Predicted protease 533 258 Op 5 . - CDS 555121 - 555363 263 ## gi|227513588|ref|ZP_03943637.1| hypothetical protein HMPREF0497_2710 - Prom 555569 - 555628 4.0 + Prom 555290 - 555349 6.2 534 259 Tu 1 . + CDS 555492 - 555866 290 ## COG1970 Large-conductance mechanosensitive channel + Term 555951 - 555986 -0.8 + Prom 555907 - 555966 3.0 535 260 Op 1 11/0.011 + CDS 556012 - 558729 2261 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) 536 260 Op 2 . + CDS 558749 - 559420 733 ## COG0637 Predicted phosphatase/phosphohexomutase + Term 559473 - 559517 8.2 - Term 559538 - 559599 6.6 537 261 Tu 1 . - CDS 559666 - 560436 628 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 560460 - 560519 6.8 538 262 Tu 1 . + CDS 560590 - 561243 495 ## COG1428 Deoxynucleoside kinases + Term 561320 - 561365 7.5 - Term 561297 - 561361 13.1 539 263 Tu 1 . - CDS 561451 - 562185 465 ## Lbuc_1261 hypothetical protein - Prom 562291 - 562350 8.4 - Term 562394 - 562451 2.2 540 264 Op 1 . - CDS 562493 - 562978 500 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 541 264 Op 2 . - CDS 563000 - 564403 1310 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 564535 - 564594 7.7 + Prom 564429 - 564488 7.9 542 265 Op 1 . + CDS 564521 - 565363 308 ## PROTEIN SUPPORTED gi|126666946|ref|ZP_01737922.1| Ribosomal protein S15 543 265 Op 2 . + CDS 565356 - 565541 64 ## - Term 565389 - 565443 3.1 544 266 Tu 1 . - CDS 565457 - 567106 1229 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - Prom 567139 - 567198 7.3 + Prom 567218 - 567277 5.2 545 267 Tu 1 . + CDS 567311 - 568336 563 ## Lbuc_1268 acyltransferase 3 + Term 568429 - 568488 9.1 - Term 568410 - 568481 11.0 546 268 Tu 1 . - CDS 568510 - 570930 2327 ## COG0495 Leucyl-tRNA synthetase 547 269 Tu 1 . + CDS 570867 - 571061 88 ## + Prom 571235 - 571294 6.4 548 270 Op 1 5/0.032 + CDS 571325 - 571966 498 ## COG0671 Membrane-associated phospholipid phosphatase 549 270 Op 2 . + CDS 571963 - 572538 487 ## COG0500 SAM-dependent methyltransferases + Term 572547 - 572602 8.1 - Term 572535 - 572590 4.3 550 271 Tu 1 . - CDS 572594 - 574078 1130 ## COG0477 Permeases of the major facilitator superfamily - Prom 574150 - 574209 3.8 - Term 574129 - 574173 9.0 551 272 Tu 1 . - CDS 574211 - 575401 1269 ## COG0192 S-adenosylmethionine synthetase - Prom 575508 - 575567 7.1 + Prom 575495 - 575554 6.0 552 273 Tu 1 . + CDS 575659 - 576294 165 ## Lbuc_1276 hypothetical protein - Term 576784 - 576849 22.1 553 274 Op 1 . - CDS 576883 - 577791 606 ## COG0598 Mg2+ and Co2+ transporters - Prom 577825 - 577884 3.9 554 274 Op 2 . - CDS 577886 - 579250 791 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 579298 - 579357 4.5 + Prom 579510 - 579569 5.8 555 275 Op 1 . + CDS 579619 - 580176 521 ## COG1335 Amidases related to nicotinamidase + Prom 580199 - 580258 2.6 556 275 Op 2 . + CDS 580336 - 580698 366 ## Lbuc_1281 hypothetical protein + Term 580785 - 580850 21.1 - Term 580777 - 580833 14.2 557 276 Op 1 . - CDS 580886 - 581305 457 ## COG1302 Uncharacterized protein conserved in bacteria 558 276 Op 2 . - CDS 581355 - 581789 407 ## COG1302 Uncharacterized protein conserved in bacteria 559 276 Op 3 . - CDS 581827 - 582009 243 ## gi|227510600|ref|ZP_03940649.1| hypothetical protein HMPREF0496_2763 560 276 Op 4 . - CDS 582021 - 582584 493 ## Lbuc_1286 hypothetical protein 561 276 Op 5 . - CDS 582613 - 582864 270 ## COG2261 Predicted membrane protein - Prom 582917 - 582976 6.3 - Term 582887 - 582920 3.1 562 277 Tu 1 . - CDS 583076 - 584131 822 ## COG1434 Uncharacterized conserved protein - Prom 584223 - 584282 6.6 - Term 584234 - 584274 1.0 563 278 Tu 1 . - CDS 584500 - 584967 409 ## Lbuc_1289 regulatory protein MarR - Prom 585005 - 585064 7.0 + Prom 584970 - 585029 5.6 564 279 Op 1 . + CDS 585101 - 585943 635 ## COG3475 LPS biosynthesis protein 565 279 Op 2 . + CDS 586018 - 586326 268 ## Lbuc_1291 hypothetical protein + Term 586334 - 586377 4.6 - TRNA 586428 - 586502 71.7 # Asn GTT 0 0 - TRNA 586619 - 586690 71.1 # Asn GTT 0 0 - Term 586513 - 586549 0.1 566 280 Tu 1 . - CDS 586768 - 587076 294 ## Lbuc_1292 hypothetical protein - Prom 587202 - 587261 7.6 - Term 587238 - 587290 0.3 567 281 Tu 1 . - CDS 587310 - 588383 863 ## COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component - Prom 588418 - 588477 8.4 - Term 588443 - 588489 6.0 568 282 Tu 1 . - CDS 588499 - 589167 502 ## COG1705 Muramidase (flagellum-specific) - Prom 589339 - 589398 4.1 569 283 Op 1 . - CDS 589435 - 590481 651 ## Lbuc_1295 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase 570 283 Op 2 . - CDS 590405 - 590734 227 ## COG1705 Muramidase (flagellum-specific) - Prom 590935 - 590994 7.1 - Term 591041 - 591087 2.6 571 284 Tu 1 . - CDS 591152 - 592969 1851 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains - Prom 593141 - 593200 5.7 - Term 593132 - 593180 8.1 572 285 Op 1 6/0.011 - CDS 593202 - 594551 1259 ## COG1109 Phosphomannomutase 573 285 Op 2 7/0.011 - CDS 594579 - 595544 672 ## COG4856 Uncharacterized protein conserved in bacteria 574 285 Op 3 . - CDS 595547 - 596389 739 ## COG1624 Uncharacterized conserved protein - Prom 596444 - 596503 8.6 + Prom 596469 - 596528 5.2 575 286 Tu 1 . + CDS 596571 - 597245 289 ## COG4330 Predicted membrane protein - Term 597235 - 597280 4.4 576 287 Op 1 . - CDS 597367 - 599493 1454 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters 577 287 Op 2 . - CDS 599561 - 600481 930 ## COG0812 UDP-N-acetylmuramate dehydrogenase - Prom 600542 - 600601 5.0 + Prom 600422 - 600481 9.8 578 288 Tu 1 . + CDS 600669 - 601202 382 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases + Term 601206 - 601255 9.6 579 289 Op 1 3/0.117 - CDS 601247 - 601744 394 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 580 289 Op 2 . - CDS 601744 - 602217 289 ## COG0802 Predicted ATPase or kinase - Prom 602256 - 602315 7.4 581 290 Op 1 . - CDS 602399 - 603376 1071 ## COG0280 Phosphotransacetylase 582 290 Op 2 . - CDS 603413 - 604105 436 ## COG0692 Uracil DNA glycosylase - Prom 604155 - 604214 4.3 + Prom 604077 - 604136 9.0 583 291 Tu 1 . + CDS 604215 - 604772 267 ## Lbuc_1309 hypothetical protein + Term 604810 - 604853 2.1 - Term 604798 - 604841 2.1 584 292 Op 1 10/0.011 - CDS 604892 - 605365 558 ## COG0691 tmRNA-binding protein 585 292 Op 2 4/0.074 - CDS 605392 - 607734 1532 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 586 292 Op 3 . - CDS 607750 - 608496 663 ## COG1647 Esterase/lipase - Prom 608630 - 608689 9.2 + Prom 608592 - 608651 6.7 587 293 Tu 1 . + CDS 608757 - 608963 116 ## + Term 609018 - 609076 0.3 588 294 Op 1 . - CDS 609001 - 610542 986 ## COG0038 Chloride channel protein EriC 589 294 Op 2 . - CDS 610581 - 612377 893 ## gi|227510631|ref|ZP_03940680.1| conserved hypothetical protein - Prom 612411 - 612470 8.0 - Term 612438 - 612481 7.1 590 295 Op 1 . - CDS 612489 - 613808 1453 ## COG0148 Enolase - Prom 613850 - 613909 3.4 591 295 Op 2 . - CDS 613911 - 614669 654 ## COG0149 Triosephosphate isomerase - Prom 614700 - 614759 6.8 - Term 614920 - 614955 2.4 592 296 Op 1 26/0.000 - CDS 615015 - 616229 1174 ## COG0126 3-phosphoglycerate kinase - Prom 616258 - 616317 3.9 - Term 616280 - 616316 5.1 593 296 Op 2 . - CDS 616335 - 617345 994 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase + TRNA 617635 - 617706 44.4 # Arg CCG 0 0 - Term 617717 - 617765 6.2 594 297 Tu 1 . - CDS 617857 - 618768 729 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 618799 - 618858 5.3 + Prom 618906 - 618965 4.8 595 298 Tu 1 . + CDS 619016 - 619609 632 ## COG0740 Protease subunit of ATP-dependent Clp proteases + Prom 619748 - 619807 8.5 596 299 Tu 1 . + CDS 619927 - 621015 963 ## COG1064 Zn-dependent alcohol dehydrogenases + Term 621042 - 621101 17.1 - Term 621035 - 621084 12.3 597 300 Op 1 12/0.011 - CDS 621146 - 622084 738 ## COG1481 Uncharacterized protein conserved in bacteria 598 300 Op 2 12/0.011 - CDS 622097 - 623098 765 ## COG0391 Uncharacterized conserved protein 599 300 Op 3 . - CDS 623100 - 623987 655 ## COG1660 Predicted P-loop-containing kinase - Prom 624017 - 624076 7.4 - Term 624182 - 624226 2.4 600 301 Op 1 7/0.011 - CDS 624274 - 627153 1967 ## COG0178 Excinuclease ATPase subunit 601 301 Op 2 . - CDS 627169 - 629172 1331 ## COG0556 Helicase subunit of the DNA excision repair complex - Prom 629204 - 629263 3.4 602 302 Tu 1 . - CDS 629369 - 630016 537 ## COG1896 Predicted hydrolases of HD superfamily - Prom 630069 - 630128 3.5 - Term 630099 - 630145 -0.6 603 303 Tu 1 . - CDS 630150 - 631100 576 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 604 304 Op 1 3/0.117 - CDS 631178 - 632080 848 ## COG1210 UDP-glucose pyrophosphorylase 605 304 Op 2 . - CDS 632119 - 633135 1039 ## COG0240 Glycerol-3-phosphate dehydrogenase 606 304 Op 3 10/0.011 - CDS 633162 - 633998 551 ## COG0682 Prolipoprotein diacylglyceryltransferase 607 304 Op 4 2/0.160 - CDS 634010 - 635041 907 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism - Prom 635068 - 635127 3.1 608 305 Op 1 3/0.117 - CDS 635135 - 635440 228 ## COG1950 Predicted membrane protein 609 305 Op 2 . - CDS 635485 - 635808 375 ## COG1983 Putative stress-responsive transcriptional regulator - Prom 635837 - 635896 10.7 610 306 Op 1 32/0.000 - CDS 635899 - 636555 667 ## COG0704 Phosphate uptake regulator 611 306 Op 2 7/0.011 - CDS 636567 - 637325 195 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 612 306 Op 3 41/0.000 - CDS 637337 - 638143 186 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 613 306 Op 4 38/0.000 - CDS 638155 - 639045 518 ## COG0581 ABC-type phosphate transport system, permease component 614 306 Op 5 39/0.000 - CDS 639042 - 639971 675 ## COG0573 ABC-type phosphate transport system, permease component 615 306 Op 6 9/0.011 - CDS 639971 - 640858 886 ## COG0226 ABC-type phosphate transport system, periplasmic component - Prom 640895 - 640954 6.5 - Term 640992 - 641043 6.2 616 307 Op 1 40/0.000 - CDS 641110 - 642519 883 ## COG0642 Signal transduction histidine kinase 617 307 Op 2 7/0.011 - CDS 642485 - 643213 549 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 618 307 Op 3 . - CDS 643237 - 644397 758 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Prom 644422 - 644481 10.5 - Term 644499 - 644560 18.7 619 308 Op 1 . - CDS 644607 - 645671 812 ## COG1186 Protein chain release factor B - Prom 645749 - 645808 3.6 - Term 645775 - 645822 12.0 620 308 Op 2 . - CDS 645903 - 648266 2249 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) - Prom 648389 - 648448 4.6 - Term 648449 - 648482 0.2 621 309 Tu 1 . - CDS 648529 - 649092 729 ## PROTEIN SUPPORTED gi|28377598|ref|NP_784490.1| ribosomal protein S30EA 622 310 Tu 1 . - CDS 649214 - 649630 256 ## COG1040 Predicted amidophosphoribosyltransferases - Prom 649789 - 649848 3.7 - Term 649734 - 649796 0.5 623 311 Tu 1 . - CDS 649900 - 651021 399 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) + Prom 651169 - 651228 5.9 624 312 Tu 1 . + CDS 651273 - 651941 371 ## COG1739 Uncharacterized conserved protein - Term 651886 - 651923 2.0 625 313 Tu 1 . - CDS 652048 - 653124 720 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase - Prom 653196 - 653255 7.1 + Prom 653304 - 653363 8.2 626 314 Tu 1 . + CDS 653587 - 653829 226 ## OEOE_0886 major facilitator superfamily permease 627 315 Tu 1 . + CDS 655718 - 655966 192 ## COG3464 Transposase and inactivated derivatives - Term 656395 - 656431 7.3 628 316 Tu 1 . - CDS 656667 - 658508 1457 ## COG0531 Amino acid transporters - Prom 658550 - 658609 3.9 - Term 658608 - 658674 9.1 629 317 Op 1 41/0.000 - CDS 658696 - 660312 1543 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 630 317 Op 2 . - CDS 660383 - 660700 336 ## COG0234 Co-chaperonin GroES (HSP10) - Prom 660886 - 660945 6.5 - Term 660942 - 661010 15.0 631 318 Tu 1 . - CDS 661036 - 661668 508 ## COG2344 AT-rich DNA-binding protein - Prom 661859 - 661918 6.9 + Prom 661809 - 661868 4.6 632 319 Tu 1 . + CDS 662033 - 663838 1427 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Term 663837 - 663899 16.0 633 320 Op 1 9/0.011 - CDS 663948 - 664982 697 ## PROTEIN SUPPORTED gi|227425790|ref|ZP_03908856.1| SSU ribosomal protein S18P alanine acetyltransferase 634 320 Op 2 20/0.000 - CDS 664997 - 665572 332 ## PROTEIN SUPPORTED gi|227877624|ref|ZP_03995677.1| ribosomal protein ala-acetyltransferase 635 320 Op 3 . - CDS 665556 - 666278 227 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 636 320 Op 4 . - CDS 666259 - 667053 586 ## COG3884 Acyl-ACP thioesterase - Prom 667077 - 667136 8.4 637 321 Op 1 2/0.160 - CDS 667189 - 667986 422 ## COG0313 Predicted methyltransferases - Prom 668017 - 668076 3.0 638 321 Op 2 1/0.234 - CDS 668078 - 668410 220 ## COG4467 Uncharacterized protein conserved in bacteria 639 321 Op 3 2/0.160 - CDS 668433 - 669443 689 ## COG0470 ATPase involved in DNA replication 640 321 Op 4 4/0.074 - CDS 669453 - 669779 327 ## COG3870 Uncharacterized protein conserved in bacteria 641 321 Op 5 . - CDS 669782 - 670375 450 ## COG0125 Thymidylate kinase - Prom 670506 - 670565 5.2 642 322 Op 1 . - CDS 670624 - 670893 302 ## Lbuc_1373 hypothetical protein 643 322 Op 2 23/0.000 - CDS 670906 - 671505 542 ## COG0353 Recombinational DNA repair protein (RecF pathway) 644 322 Op 3 30/0.000 - CDS 671529 - 671840 484 ## COG0718 Uncharacterized protein conserved in bacteria 645 322 Op 4 . - CDS 671864 - 673630 1503 ## COG2812 DNA polymerase III, gamma/tau subunits + Prom 673486 - 673545 7.8 646 323 Tu 1 . + CDS 673708 - 673962 72 ## + Term 674058 - 674097 -0.1 - Term 673888 - 673926 6.1 647 324 Op 1 . - CDS 674069 - 674542 261 ## COG0590 Cytosine/adenosine deaminases 648 324 Op 2 . - CDS 674565 - 675173 587 ## COG2813 16S RNA G1207 methylase RsmC - Prom 675308 - 675367 7.9 + Prom 675304 - 675363 7.2 649 325 Op 1 2/0.160 + CDS 675383 - 675565 160 ## COG0695 Glutaredoxin and related proteins + Term 675603 - 675638 -0.5 + Prom 675574 - 675633 2.0 650 325 Op 2 24/0.000 + CDS 675665 - 677830 1486 ## COG0209 Ribonucleotide reductase, alpha subunit 651 325 Op 3 . + CDS 677873 - 678829 850 ## COG0208 Ribonucleotide reductase, beta subunit + Term 678864 - 678929 20.9 - Term 678855 - 678916 23.1 652 326 Op 1 . - CDS 678958 - 679953 632 ## COG1052 Lactate dehydrogenase and related dehydrogenases - Prom 680062 - 680121 4.7 - Term 680055 - 680103 5.0 653 326 Op 2 4/0.074 - CDS 680129 - 681595 1232 ## COG4468 Galactose-1-phosphate uridyltransferase 654 326 Op 3 2/0.160 - CDS 681601 - 682602 1067 ## COG1087 UDP-glucose 4-epimerase 655 326 Op 4 . - CDS 682629 - 683795 1166 ## COG0153 Galactokinase - Term 684112 - 684161 7.2 656 327 Tu 1 . - CDS 684179 - 685207 885 ## COG2855 Predicted membrane protein - Prom 685252 - 685311 9.1 + Prom 685193 - 685252 4.4 657 328 Tu 1 . + CDS 685275 - 686207 601 ## COG0583 Transcriptional regulator + Prom 686296 - 686355 11.8 658 329 Tu 1 . + CDS 686531 - 686725 119 ## gi|227510699|ref|ZP_03940748.1| hypothetical protein HMPREF0496_2862 + Term 686936 - 686977 6.5 - Term 686744 - 686790 0.2 659 330 Op 1 . - CDS 686838 - 687044 66 ## 660 330 Op 2 . - CDS 687026 - 689560 1777 ## COG2898 Uncharacterized conserved protein - Prom 689619 - 689678 7.3 661 331 Tu 1 . - CDS 690027 - 690131 90 ## - Prom 690156 - 690215 5.0 + Prom 689895 - 689954 6.8 662 332 Tu 1 . + CDS 690126 - 691334 656 ## LVIS_2125 hypothetical protein + Term 691481 - 691544 20.0 - Term 691475 - 691525 15.0 663 333 Op 1 47/0.000 - CDS 691561 - 691926 586 ## PROTEIN SUPPORTED gi|227510703|ref|ZP_03940752.1| ribosomal protein L7/L12 664 333 Op 2 43/0.000 - CDS 691966 - 692490 842 ## PROTEIN SUPPORTED gi|227510704|ref|ZP_03940753.1| ribosomal protein L10 - Prom 692513 - 692572 4.5 - Term 692610 - 692643 2.7 665 333 Op 3 55/0.000 - CDS 692679 - 693374 1158 ## PROTEIN SUPPORTED gi|227510705|ref|ZP_03940754.1| 50S ribosomal protein L1 666 333 Op 4 . - CDS 693481 - 693906 698 ## PROTEIN SUPPORTED gi|227510706|ref|ZP_03940755.1| 50S ribosomal protein L11 667 334 Tu 1 . - CDS 694034 - 694807 499 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold - Prom 694842 - 694901 6.1 668 335 Tu 1 . - CDS 694936 - 695487 670 ## COG0250 Transcription antiterminator - Prom 695531 - 695590 4.5 669 336 Op 1 . - CDS 695597 - 695734 81 ## Lbuc_1466 preprotein translocase subunit SecE 670 336 Op 2 . - CDS 695799 - 695984 328 ## PROTEIN SUPPORTED gi|227510710|ref|ZP_03940759.1| 50S ribosomal protein L33 671 336 Op 3 . - CDS 695986 - 696525 311 ## Lbuc_1468 RNA polymerase sigma factor, sigma-70 family - Prom 696577 - 696636 6.2 672 337 Op 1 6/0.011 - CDS 696685 - 697221 531 ## COG3688 Predicted RNA-binding protein containing a PIN domain 673 337 Op 2 7/0.011 - CDS 697237 - 698004 627 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 674 337 Op 3 8/0.011 - CDS 697994 - 698404 286 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 675 337 Op 4 1/0.234 - CDS 698413 - 699819 1297 ## COG0215 Cysteinyl-tRNA synthetase - Prom 699896 - 699955 6.2 - Term 699900 - 699937 7.1 676 338 Tu 1 . - CDS 699968 - 701458 1263 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases - Prom 701578 - 701637 6.5 + Prom 701328 - 701387 7.0 677 339 Tu 1 . + CDS 701458 - 701652 86 ## gi|227510717|ref|ZP_03940766.1| hypothetical protein HMPREF0496_2880 + Term 701879 - 701907 -0.0 - Term 701590 - 701632 5.2 678 340 Op 1 2/0.160 - CDS 701657 - 702850 811 ## PROTEIN SUPPORTED gi|163764768|ref|ZP_02171822.1| ribosomal protein S5 679 340 Op 2 1/0.234 - CDS 702869 - 704242 896 ## COG1066 Predicted ATP-dependent serine protease - Prom 704269 - 704328 2.7 680 341 Tu 1 . - CDS 704350 - 704889 490 ## COG0756 dUTPase - Prom 704918 - 704977 7.2 + Prom 704934 - 704993 6.4 681 342 Tu 1 . + CDS 705035 - 705718 602 ## COG0120 Ribose 5-phosphate isomerase + Term 705743 - 705789 10.2 + Prom 705820 - 705879 5.8 682 343 Tu 1 . + CDS 705970 - 707304 890 ## COG3579 Aminopeptidase C + Term 707326 - 707375 6.3 - Term 707314 - 707363 8.5 683 344 Op 1 . - CDS 707489 - 708148 399 ## COG0588 Phosphoglycerate mutase 1 - Prom 708188 - 708247 2.7 - Term 708200 - 708247 -0.9 684 344 Op 2 1/0.234 - CDS 708281 - 709324 593 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 685 344 Op 3 . - CDS 709335 - 710282 598 ## COG0679 Predicted permeases - Prom 710318 - 710377 7.0 + Prom 710492 - 710551 7.0 686 345 Tu 1 . + CDS 710578 - 711690 1123 ## COG1316 Transcriptional regulator + Term 711704 - 711755 14.0 - Term 711692 - 711742 6.2 687 346 Op 1 13/0.011 - CDS 711757 - 712593 544 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 688 346 Op 2 13/0.011 - CDS 712611 - 713411 651 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 689 346 Op 3 9/0.011 - CDS 713423 - 713935 502 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 690 346 Op 4 . - CDS 713932 - 714351 307 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Prom 714380 - 714439 4.8 691 347 Tu 1 . - CDS 714450 - 715079 657 ## COG0546 Predicted phosphatases - TRNA 715315 - 715400 58.3 # Leu AAG 0 0 - Term 715263 - 715307 9.1 692 348 Op 1 . - CDS 715505 - 716383 985 ## COG0083 Homoserine kinase 693 348 Op 2 6/0.011 - CDS 716448 - 716756 82 ## COG3091 Uncharacterized protein conserved in bacteria - Prom 716819 - 716878 2.4 - Term 716837 - 716887 -0.2 694 349 Op 1 . - CDS 716937 - 719105 365 ## PROTEIN SUPPORTED gi|87310993|ref|ZP_01093118.1| ribosomal protein S1-like RNA-binding domain protein - Prom 719131 - 719190 5.8 - Term 716837 - 716887 -0.2 695 349 Op 2 . - CDS 716937 - 719105 880 ## PROTEIN SUPPORTED gi|87310993|ref|ZP_01093118.1| ribosomal protein S1-like RNA-binding domain protein - Prom 719131 - 719190 5.8 - Term 719441 - 719515 20.3 696 350 Op 1 . - CDS 719549 - 720094 337 ## Lbuc_1491 hypothetical protein 697 350 Op 2 . - CDS 720004 - 722670 2407 ## COG0474 Cation transport ATPase - Prom 722712 - 722771 2.2 - Term 722682 - 722734 11.0 698 351 Op 1 5/0.032 - CDS 722860 - 723687 761 ## COG0171 NAD synthase 699 351 Op 2 . - CDS 723706 - 725163 1086 ## COG1488 Nicotinic acid phosphoribosyltransferase - Prom 725201 - 725260 8.7 + Prom 725205 - 725264 6.2 700 352 Tu 1 . + CDS 725285 - 726025 574 ## COG1922 Teichoic acid biosynthesis proteins + Term 726057 - 726098 1.6 - Term 727353 - 727423 12.5 701 353 Op 1 2/0.160 - CDS 727439 - 728143 749 ## COG2188 Transcriptional regulators 702 353 Op 2 . - CDS 728173 - 729291 659 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase 703 353 Op 3 . - CDS 729314 - 730114 622 ## COG0345 Pyrroline-5-carboxylate reductase - Prom 730159 - 730218 6.4 - Term 730215 - 730258 0.0 704 354 Tu 1 . - CDS 730271 - 730828 503 ## Lbuc_0831 VanZ family protein - Prom 730930 - 730989 5.8 + Prom 731406 - 731465 2.4 705 355 Tu 1 . + CDS 731487 - 731858 303 ## COG3152 Predicted membrane protein + Term 731874 - 731913 1.1 - TRNA 732442 - 732513 64.0 # Gln TTG 0 0 - TRNA 732523 - 732605 70.1 # Tyr GTA 0 0 - Term 732379 - 732428 11.2 706 356 Op 1 . - CDS 732677 - 733498 603 ## COG1409 Predicted phosphohydrolases - Term 733507 - 733545 5.0 707 356 Op 2 . - CDS 733563 - 735053 1352 ## COG3104 Dipeptide/tripeptide permease - Prom 735150 - 735209 7.1 - Term 735111 - 735157 -0.8 708 357 Op 1 . - CDS 735257 - 735532 103 ## Lbuc_1502 hypothetical protein 709 357 Op 2 . - CDS 735569 - 735886 344 ## Lbuc_1503 hypothetical protein + Prom 736075 - 736134 7.0 710 358 Tu 1 . + CDS 736264 - 736884 540 ## gi|227513765|ref|ZP_03943814.1| hypothetical protein HMPREF0497_2887 + Term 737018 - 737069 4.8 - TRNA 737500 - 737572 76.5 # Thr CGT 0 0 Predicted protein(s) >gi|238617813|gb|GG669608.1| GENE 1 1591 - 2328 301 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 219 1 221 223 120 33 1e-25 MSEKVKVTNLVKTFGTNKVLKGINLTVQNNEVVVIIGPSGSGKSTLLRTLNKLEEPTSGS VVIDNVDIANKNANMNTVRENIGMVFQHFNLFNNLTVGENIMLAPVELKKESKQAAAEQA KRLLNTVGLEEKFNARVQSLSGGQQQRVAIARALAMDPNIMLFDEPTSALDPEMVGDVLE VMKDLAKKGMTMIVVTHEMGFAKEVADRVVFVDDGQILEQGTPDQIFEHPKNERLQDFLN KILNV >gi|238617813|gb|GG669608.1| GENE 2 2325 - 4469 1897 714 aa, chain - ## HITS:1 COG:L165_1 KEGG:ns NR:ns ## COG: L165_1 COG0834 # Protein_GI_number: 15673741 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Lactococcus lactis # 13 508 10 503 509 389 42.0 1e-107 MNHKLSKAQRWVVFLMTFLTCLIFSNIAAQAKTYQIGTDVTYPPFEFANKQNKYVGIDID IMNAIAKEEGFKVHIKPVGFNAAVQSVQSGQEDGVIAGMTITPDRQAKFDFGTPYYKTGV VMAVAKSSHITNFKQLKGKRVALKTGTAAADYANSIKKKYGFKTVTFDDSDNMYQDVTTG NSVACFEDQPVMQYGIKQGLKLKIVTKPANTGWYGFAVKKGTHKALVSKFNAGLKKIRAN GTYDKIVGQYLGSNANQAVKGKTFTIGTDVTFPPFEFANKQNKYVGIDMDLVRAIANEQG FKVKIKPLGFNAAVQAVESGQIDGVIAGMSITNARKAQFNFSNPYFTSGVVMAVNKKSKV KSLSQLRGKKVAVKTGTAGADYANSIKKKYGFTVTTFDDSNNMYQDVTTGNSAACFEDHP VMQYAIKQGTKLKIVTKPAESAPYGFAVKKGHNKALLAAFNNGLKDLKASGTYDDIKAKY LGSSDALTTTKSTGSSEDRTFLGLIKQNQGALLSGLKETMWLTVVSIFFATIFGIVVGLM GVVPGKFFNWLSSILIYLFRGMPLLVLALFIYTGIPSLTGEKIPAFVAGVVTLTFNEGAY IAAFVKGGIQAVDPGQMEAARSLGLPFGKSMRKVILPQGIRIMIPSFINQFIITLKDTSI LSIIGLLELTQTGKIIIARNLEGFKVWTIVALMYLIIITLLTWLSNWVQRRTKV >gi|238617813|gb|GG669608.1| GENE 3 4785 - 5954 734 389 aa, chain + ## HITS:1 COG:BS_ykrV KEGG:ns NR:ns ## COG: BS_ykrV COG0436 # Protein_GI_number: 16078422 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Bacillus subtilis # 1 389 1 389 398 514 65.0 1e-146 MKFAESNVLQGLPKQFFANLVKKVNAKIDTGADVINLGQGNPDQPTPDFIVKAMQEQTAV PDNHKYSQFRGDPALKRAAADFYKREYGVELNPDKEIAILGGSKIGLVELPFAILNPGDT MLLPDPGYPDYLSGVALAQVDLSLMRLKEKNNFMPDYHDLDPQIVKKAKLMYLNYPNNPT GAVATPDFFERTVAFANQNQIGVVHDFAYGAIGFDGKKPISFLQTPGAKEVGIETYTFSK SYNMAGWRIGFAAGNADMIEAINLLQDHLFVSVFPAMQKAAITALNSDQHTVRDLVALYE KRRNQFFTAARSIGWEPYHSGGSFYAWMPVPEGYTSESFADLLLEKAAVAVAPGNGFGDG GEGFVRVGLLIDEPRFTEACQRIKKLGLF >gi|238617813|gb|GG669608.1| GENE 4 6038 - 6934 526 298 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0784 NR:ns ## KEGG: Lbuc_0784 # Name: not_defined # Def: peptidase M10A and M12B matrixin and adamalysin # Organism: L.buchneri # Pathway: not_defined # 70 298 115 343 343 271 55.0 2e-71 MQQIRCTLLLLMATMLSLCLTILTTNQDVGANPLNPAFNAPKTIHSSAENIPKNGYIAVN QQFDGTKTSTNQKNRLSAHSIAKLIKETPDMNPDPLILSLSHTDYLKNEKLFDVSYNVFH FSPKAMFKSNTATIYTTSNRLLPLIKIAANKWNNALDTVVFKIGSQRTHTLTISFGNAGQ DNWDGLFNGRKIYVDRAHFNDPKYPTAYMKPSIASQMSIEQYWTGVIAHELGHTLGLDHT AYQSDLMFAPTSDGNVITKYLWKRPIQRSSTGLDGTETAQISQRDLNRAKLAKQLDYW >gi|238617813|gb|GG669608.1| GENE 5 7113 - 7931 691 272 aa, chain - ## HITS:1 COG:PM1534 KEGG:ns NR:ns ## COG: PM1534 COG3971 # Protein_GI_number: 15603399 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase # Organism: Pasteurella multocida # 47 253 39 250 267 87 30.0 2e-17 MDTQKQATLELSAKENAFAKELFNAYQSHRALKESDWKDVVTDEATAYRVQKRFTELKSE EVGGYKVSLTSKQTQDMFDSDSPLYGAQVKSHFVQSPVTLHRAELMEPLAEVEMLFTAKE PLSSKDSLEDLLKKTKVAPAVEVPDSRFSDWFPSLSKYMVMADAAVGGFVVYGQEVEATR LFDHVDDLANVTCQLFHNGQKLKDGASSEVLGNPLNSLHWLVKKLEDQGQPLQAGQRVSS GTFLLPESLTDGEWKATFDQGLGAVFLNVLKD >gi|238617813|gb|GG669608.1| GENE 6 7951 - 8172 151 73 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKSDISNSNDNPGQISHLGAVSNLNFLQHNAPSSFKHIRFNIAFIFNDIVSHCIITHTYL SSQNLISEDKQIN >gi|238617813|gb|GG669608.1| GENE 7 8555 - 9127 462 190 aa, chain - ## HITS:1 COG:BH3001 KEGG:ns NR:ns ## COG: BH3001 COG0110 # Protein_GI_number: 15615563 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Bacillus halodurans # 1 182 1 182 186 208 51.0 4e-54 MATEKEKFLAGEPYNIMDPELASEETKARRLCKMMNELDDTAGKEKEQLIRQLFGSVGKS PWVQPNFRCDFGYNIHVGDNFMCNYDNVILDIAPVTIGNHCMLAPHVQIYSAYHPLDPAG REAFTGLGKPVTLGDDVWVGGGSVILPGVTLGNNVIVGANSTVTKSFGDNVIIAGNPARI LRENPNKFQK >gi|238617813|gb|GG669608.1| GENE 8 9317 - 9586 328 89 aa, chain + ## HITS:1 COG:lin0537 KEGG:ns NR:ns ## COG: lin0537 COG3830 # Protein_GI_number: 16799612 # Func_class: T Signal transduction mechanisms # Function: ACT domain-containing protein # Organism: Listeria innocua # 1 89 1 89 89 83 52.0 1e-16 MKAVITVIGHDQIGIVAKVSQKLATLKVNITDISQTLMHGDFTMMLMGEWRESEVDFETI KRGLTELGSETGLDIHIQRQELFDAIQKL >gi|238617813|gb|GG669608.1| GENE 9 9601 - 10944 1484 447 aa, chain + ## HITS:1 COG:lin0538 KEGG:ns NR:ns ## COG: lin0538 COG2848 # Protein_GI_number: 16799613 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 447 1 451 451 610 72.0 1e-174 METKQILETIQMVSEEKLDIRTITMGISLFDCIDSSGEKARQKIYDKLTSSAKDLVKVAN QIESEYGIPIVNKRLSVTPISMIAAACHDDNYVAYAETMEKAAQTLGVDLIGGFSALVQK GYQTGDKKLIASIPEALNETTRVCGSVNVGSTRAGINMDAVKQMGQVVKQLAAIDPVSCM SLVVFANAVEDNPFMAGAFHGVGEADKVINVGISGPGVVKRALEKVRGESIDIVSETIKK TAFKVTRMGQFVGNVAAERLNVPFGIVDLSLAPTPSQGDSVAEILEEIGLQSVGAPGTTA ALALLNDAVKKGGVMACEHVGGLSGAFIPVSEDSGMIKAVEHSNLNIEKLEAMTAVCSVG LDMIAVPGDTPAETISGMIADEAAIGVINNKTTAVRVIPATGKKVGEKIDFGGLFGYAPV MPVNLNSPAKMINRGGRIPAPIHSFKN >gi|238617813|gb|GG669608.1| GENE 10 11170 - 13560 1489 796 aa, chain + ## HITS:1 COG:YPO2803 KEGG:ns NR:ns ## COG: YPO2803 COG1472 # Protein_GI_number: 16123001 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Yersinia pestis # 40 659 73 705 793 407 38.0 1e-113 MKSSEEPLTNRLSKLSSTDLIKLTSGEDFWHSSSLIDDHIPNFRMSDGPNGLRYQADKGD ALGINNSVPSTCFPTASAIACTWDPELIKRMGRAIGQEARSLNVDMVLGPGINIKRNPLC GRNFEYFSEDPYLAGTIGAAWIKGLQSQGVGACVKHFAGNNQENDRLRSDSLIDQTALHE LYLAAFQIAVTRAQPEGVMCSYNKVNGTYASDNPYLLTTVLRQQWRFKGSVITDWGALNN KIASINAGTDLEMPSSNHLFDKQGLAGLKTGQLQNKALYRAAENVIKIAEKKRPVFKGDR SALLKESGQLAQKIEESAAVLLKNDNQVLPIKSSDEVAVIGEMAAHTRYQGAGSSHINPP ESVTILQGLDHMGVHYQYQQGYSLSNQKSDQFITSAVALAKKADKVIFVAGLPENDESEG FDRKNMQLPVIQNVLIDRIAAVNPNVIVLLVAGAPVELPWLKDVKGVLNLYLGGQYVGNA AANLLLGKVNPSGKLAESYPINYMDVPSAEIYDHNPQSVGYAESVYVGYRYYEKSGTPVA FPFGYGLSYTTFKISRIEIDTDMIRESQSIHVKADITNTGNVDGAEVIQVYVGNEKDRPL KPLKELKGFKKVVIRAGQTKSVTVELPAQAFSEWCDASQKWQLPLGHKFIIIGDSSNNVV FSTRIQSKGISFPDKKNLPIWYSKPQDKPTLADFSKMSGLEIKKQVVPKPGQYTKLNTPR ELSMHSFIIRKMIKRMKEARLKGISDPNSAAVKFEETIIMDSPLIRLAQQSEGKLSLKTV DKLVEIANRRYIKALL >gi|238617813|gb|GG669608.1| GENE 11 13687 - 14115 448 142 aa, chain - ## HITS:1 COG:BS_yyaT KEGG:ns NR:ns ## COG: BS_yyaT COG0454 # Protein_GI_number: 16081124 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 15 142 15 143 148 93 38.0 1e-19 MRLIVESSKPIRAAATYVRLSVFVIERGIDLRDEFDDKDTDQEVYAVLFDEKTPVSTCRF EQTDENTLKIGRVATLKAYRGKGLGKRVLTAMEKYAKQLGLTKSLIHSEVTAEGFYEKMG YSVASKPFFEDGVPCVIVKKDL >gi|238617813|gb|GG669608.1| GENE 12 14341 - 15735 1066 464 aa, chain + ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 8 463 6 465 466 139 29.0 2e-32 MSRKEKFSQQKKIKRNRKLRRFSAVVVLLLAGGFIGSHVYFQNHFKWTKINDVNVSGLTV AQATKKLNKSRIDESGNYLVVKDSRIKLNSDDVKQLFKHRSSMSMLTSKQMNAQAEVSNK AYHYRIKTLLPKFENRVDQMNMTRKPTIDSTINLSNGKVTVKKGTQGTELDKASMVKDFK KQAKDNLLISVKMKKQVAAAPNSATIKNRQQALQKRLDNKVTLKTYNKSFTFAAKKWLTN GEVTANGHYKFDTSKVTHWVAKFANKVDTLGKSLTISKSGKKITIPSGGTYGWKVNRQSL SNAIAKNLTQKNPQNVNLKNYVSGTGYGINGVGKTYVAVDLTNLQEYIYKNGHLKAKIPV MSGTLTGGNATPTGTYFIMYKQRHATLRGKNSDGSKYASPVGYWEPVTLSGVGLHDSPWQ PASVYGNPSARAQYHSHGCLNNPPSQMPKVWKYTHTNEPVVIYK >gi|238617813|gb|GG669608.1| GENE 13 15882 - 16205 332 107 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0797 NR:ns ## KEGG: Lbuc_0797 # Name: not_defined # Def: integral membrane protein # Organism: L.buchneri # Pathway: not_defined # 1 107 1 104 104 98 63.0 9e-20 MSQNKIVNALSYLSIIFAPFIFPFIVWLVTTDHQDMHETARNAFLLHLIPLVLTILTMMI VGITGLTTKNSQITGIMLIILLVLVVLVDVAMFIYNLYLGIKILIAD >gi|238617813|gb|GG669608.1| GENE 14 16242 - 16715 459 157 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0798 NR:ns ## KEGG: Lbuc_0798 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 33 156 31 154 156 152 61.0 4e-36 MTKTLFKLIALPIIGLTLGTFGELAHSFSVSASYFKTEKIYNSTPQTLRGNWYSYVNGHM CVTHINKFSVTQTYKGKTHGLFRSNWKGYKKLAVAKIVSSEKYTFNALADKAYQSDGGWK TTYRTINKQKVKVLRDYHGSGGYVDLFRAPIYKSYAK >gi|238617813|gb|GG669608.1| GENE 15 16912 - 19866 2502 984 aa, chain - ## HITS:1 COG:lin1189 KEGG:ns NR:ns ## COG: lin1189 COG2409 # Protein_GI_number: 16800258 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Listeria innocua # 12 961 12 1055 1066 519 31.0 1e-146 MQRFREKHVLALIIWLGLALIAIFTLPNISQLVRDKGAISLPSNVESEVANKIQKKAAGG KSVRSLILVFNNKNGKITSEQSQQITDAANAVKSDASLHTNSVTSPGDNSAAKKQLTSDD KTTQMVMVTLPSKYKVRSQTDKLLTKIKTPGLRTYVTGNDILNEDFSTVTEKGLQKTEII AAIFIFIVLIIVFRSLFIPIISLLTVGLSYLMSLNVVMNLADKYNFPISNFTQVFLVVVL FGIGTDYNILLYDRFKEEIKNGLDATAAARTARKHAGRTILYSGSSVLIGFTALALAKFE FYRSGVAVAVGVAILLAVLLTFNMFFMSTLGEKLFWPSKDLSAHDRSFLWNLLSKITLSH TFVMVGILVIAAIPLLFFGTQQLNFNNADELPDTVQSKAGYEVIQAHYPAGMSGPSTLYI ESKKSLDNQKDLAELDDLTGYLNSEPGVKTVASVTRPSGDKIQQLYLKSQLGKLVNGLNQ ANYGLKKVQKGLTSANKQLASSNASQNAAQVQKLANGAKSLQAGAQQLSQGVSTYTAGVG QLSSGSQQLSRGASSLTSGVGQLQAGSQQVTSGIRQLQRRTSRIPSVRQSAGRLAAGSSS VTSGLGRLRSQSTPFASGLNRLNQGSSQLQQKSTTLTSGARSVASGSAQVNSGVQELNTK MKQLEAQTQKLQQGLTSANNALGQIDNGTNTVNNYLKQMQKSYLGNTFYMPADTVKSSSF TPSLDTFMSKNRKITNMTIVLTSDPSTTQSAKRIRTISSDVKARLKNTDLKNATVAIGGQ SSQTADLQKTANGDFLRTVAIMLIGIGLALMIVTRSLVQALTIIGTLIVTYFGSLQITRW ISGYLMARDMLTWNTPFFSFIMLIALGVDYSIFLMMRYRDDASAIPDVRRRILHSATIIG TVVISAAIILGGTFAALIPSNVLTLIQVATAVIVGLIILVIALPIIMSAMIKWTYPYVTD KMYQKKLEEDEKNHPTRRSKHSES >gi|238617813|gb|GG669608.1| GENE 16 20046 - 20609 310 187 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0800 NR:ns ## KEGG: Lbuc_0800 # Name: not_defined # Def: regulatory protein TetR # Organism: L.buchneri # Pathway: not_defined # 1 187 1 187 192 243 62.0 4e-63 MKYDLSKKPTRGAQRTLDAFFNTMLSLLSQKTFDNISVNEICNVSNFPRATFYNYFDDKY DLVDYCWHVLAAEIQVDKVTKVQSDKALMVYFDRLYDIFEKNQNVLNHILKNNDFSGTLV TSFVNYLKNMMQQIFYESLNYSKPEIPTQLMADHCSETVLLILEWIFLKQKSTTKQQAHK YLETLLD >gi|238617813|gb|GG669608.1| GENE 17 20842 - 21141 274 99 aa, chain + ## HITS:1 COG:lin0863 KEGG:ns NR:ns ## COG: lin0863 COG4367 # Protein_GI_number: 16799937 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 99 1 99 103 74 35.0 5e-14 MSLTADEAAATIEEFQQNFELAGVSLDTAAKDLHTSPLHLKQVMNLNVTRIEEPWILRNY LVKIILNHEREPVPFSKLTGNPKRYRFLNHQYIEEGKLA >gi|238617813|gb|GG669608.1| GENE 18 21271 - 21873 488 200 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0827 NR:ns ## KEGG: Lbuc_0827 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 199 9 209 210 121 35.0 1e-26 MILLTTMSLAACGHSSEKTPNKSESQKTAQSFRVSSNGSAIGRADYNRIETGNVTSPKNG TSKNVILTSFGKPNSKSRVTVNNSGKKAAIQYSWTNLKTSFKASALTVEFLNGHAIGKGY IEASIKNRRYISKNRLNNVQKGETYTQVVKTLGVPDAESLTGHGNVSARNVTYATGKNGR ALSLMFAGDKLTSKMQTVVK >gi|238617813|gb|GG669608.1| GENE 19 22346 - 23770 1101 474 aa, chain + ## HITS:1 COG:CAC0274 KEGG:ns NR:ns ## COG: CAC0274 COG1027 # Protein_GI_number: 15893566 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Clostridium acetobutylicum # 2 456 4 458 465 409 47.0 1e-114 MRLEKDCIGEMFVPDDALYGIHSLRAKQNFPITREHVNSLIIESYLQIKKAAALANQQAG TLNKEKATFIISACNQLLLSKDFRAMIVPAIQGGAGTSTNMNINEVVANLAMKISGEGSQ DPVSIHPNDDVNQSQSTNDTYPTAGKMAMLKALDPLEDMLKDLTHALEQKAEAYRNAIKV GRTQLQDAVPTTFGRSFQAYSSMFKRDLQKMKSFEASLEQVNLGGTAIGTGLNASVSYRQ AVTPILSQVSHLSLTQSDDLVDATQNSDVFAGFSAILKGLAINLSKFCNDLRLLASGPQA GLAELSLPKVQAGSSIMPGKVNPVIPEVVNQVAFEIIGKDLTVTMAAESGQLELNAFEPM IFRELLISEDHLTKAIQTLIENCVTGIKVNLTHCQQEVDHSSITATILSPYLGYEQTTAL IKKSEVTHTSVKQVVKMAHLLPDSLIDSLFSPEVLTNAKPIEPSESGSFVNSNR >gi|238617813|gb|GG669608.1| GENE 20 23965 - 26745 1572 926 aa, chain + ## HITS:1 COG:MTH1516 KEGG:ns NR:ns ## COG: MTH1516 COG0474 # Protein_GI_number: 15679513 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Methanothermobacter thermautotrophicus # 17 922 13 909 910 719 42.0 0 MANNESTKVDDVAKKSLEGLMTDYQTTSQGLAQEEADNRLKKYGENTIQAAKKRSEILIF VENFTSMMAILLWASGIIAMFAGMLELGVAIWTVNVINGCFSYWQQHAAQKATDSLKKML PSYVKVTRNGSVKQIREEELVPGDLFALQAGDSIPADARIFNCSNLQVDESSLTGESVPV DKGDQYQHGDGEFAQNNIVFAGTTVTSGTASGIVFATGMTTEFGRIAQLTQNQKKVMYPL QRELNQLTRQLTLIAVLIGVAFFLLAIFFVHSPIASSFIFALGMIVAFIPEGLLPTVTLS LAQGTQRMAKRHALLKNLNSVETLGETTVICSDKTGTLTQNQMTVNHIWLISKQYEVSGT GYFTNGTVTSAGQSVDIGEEADLKILLQIATLDNDTEVTEGKKDEKSKILGTPTEAALVI LSRKAGINSRHENQKFPRIKELPFDSKRKLMSTISKTQTGKPIIYTKGALSSELQICDRI LDAGQIRTITDADRQKVLDVNEKYSREGLRSLAFSFREVAGQDPLVGQKIDDYTIKTAET HMVFVGLVTMSDPPRPEIFDAVKKCHRASIRIIMVTGDSPITAKSIATKIGITTDKAQVI TGNELDQLSDDDLQKAVKGEVIFARVAPEHKFRIVSMCQKNGEVVASTGDGVNDAPALKR ADIGIAMGVTGTDVAKDAADMILTDDNFASIVSAIEEGRTVYSNLQKFLLYILNSNVPEA APSVVFLLTRGLVPLPLTVMQILTVDLGTDLLPALGLGIEKSEPGIMDLPPRPQDSHLLN RSIVIKAFGLYGLVASIISTCAYFFVNGVHGWPSVSLMSSGTGYAEATTMTLGAIIFCQI AAAMNCRTQISSVFSVGLFSNRRIWLGIIVEIVLLAVLMYTPFLQAVFNTGPLDRVEWFF LFCIPIPLFLLEELRKWIVRKVDSRH >gi|238617813|gb|GG669608.1| GENE 21 26919 - 27371 377 150 aa, chain + ## HITS:1 COG:BH3077 KEGG:ns NR:ns ## COG: BH3077 COG1846 # Protein_GI_number: 15615639 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 150 1 150 150 172 63.0 2e-43 MVDILRSIGVIARALDSIANVEFKQFDLSKGQYLYLVRIYEHPGIIQERLAEMIKVDRTT AARAIQKLEKNGFIRKQSDNVNKKIRRLFVSPKGKEIAPMIQKENQYSNQVAVQGLSELE NKQLAELLKKVSYNVNADWDKVKKGQQRIY >gi|238617813|gb|GG669608.1| GENE 22 27395 - 27910 299 171 aa, chain + ## HITS:1 COG:BS_paiA KEGG:ns NR:ns ## COG: BS_paiA COG0454 # Protein_GI_number: 16080268 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 1 168 1 168 172 173 50.0 1e-43 MAVLLRECTLEDVQALQKISCETFTDTFGDVNTQENLEKYLANAYSIRQLKSELSDPESA FFFIYQEDQLAGYLKVNFGDNQTEEYGTDKLEIQRIYIRKAFKHLGLGTHLMHKAFEVAN QLHKHHIWLGVWENNVTAQKFYRKLGFNQIGDHVFTLGDNRQRDIIMSIDI >gi|238617813|gb|GG669608.1| GENE 23 27926 - 28642 548 238 aa, chain + ## HITS:1 COG:L36841 KEGG:ns NR:ns ## COG: L36841 COG3382 # Protein_GI_number: 15674160 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 236 1 234 235 239 50.0 3e-63 MKKLIVDDQFWRLFPEAQIDTLTLRGIDNHDKARDHAYFQQLLDEAARESEQFMTEGIFR KNPVVDQWRQAYRQFKTKKGARSSIEALLKRVDQGRSFSPIFPLVDIYNSISLRYGVPAG GEDLNAIQGNLHLGEAKGGEDFFPHGAEENSPALPGEVIYYDDQGAVCRCFNWREAQRTE LTESTTDSVLVIESINAEQAKRADEAIEALHQLCKERFKVPGHIQKVTRDNREIQLIK >gi|238617813|gb|GG669608.1| GENE 24 28934 - 29515 541 193 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0809 NR:ns ## KEGG: Lbuc_0809 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 188 1 188 218 236 60.0 3e-61 MSQEKTKVCVMCGKTIPAYANFCPYCGAKQPWLSESELGNSRVERIVQWNDTPLGRIAML IGAFLIIIVFATSCRLQDGPGHKTVGRELNQYLFNTQDKTPFGKKPKIKVDKNKGVSIKV SNSGKAVKDLKAGKPTTWNTFVTRVQRRSNSFKHVYSNQLYSKFKVTARDGKKQTLLKVD QGKVTYNIANKYK >gi|238617813|gb|GG669608.1| GENE 25 29710 - 30339 569 209 aa, chain - ## HITS:1 COG:AGc291 KEGG:ns NR:ns ## COG: AGc291 COG0110 # Protein_GI_number: 15887529 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 12 205 8 203 205 166 41.0 2e-41 MHIDFVRLSQDKPTIGKNSQTKNTTFGQWVEIGASNLIDNSTIGDYTYTGQYCFIQNSDL KKFISMAAMIRIGPTNHPYDRPAQHISLYNGGAYGFDNPDKDFLEKRSHVRTTIGNDVWI GHGAIVQAGLTIGDGAVIGSGAVVTKDVEPYTIVGGVPAKPIKDRFPDEVKTDMEKIAWW NWSREDIEKYYLDFRLPVKEFIDKHLPKS >gi|238617813|gb|GG669608.1| GENE 26 30426 - 31610 916 394 aa, chain + ## HITS:1 COG:lin2956 KEGG:ns NR:ns ## COG: lin2956 COG0111 # Protein_GI_number: 16802015 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Listeria innocua # 24 384 26 389 395 252 36.0 1e-66 MYQVKKIDPFNVTDFAGDVFQTSDTETPDAVLVRSSQVDDSLITKRLLLVARSGTGTNTI NIDACTENGTAVFNTPGVNANAVKELIIQNLFRCVRPLNEAISMVDQLHVGNEESLQEAA ESQRKDYIGQELYGKTLGILGLGTIGQRLADACYHMGMQIIGYNRSFKNLRHVQQLETIE EVMALSDFVVLLLPLTPQTEHLITDEQFKLMKKSAFLLNFGRGELVDNPAVVDALDHDEF AGYVSDFPKAELQHHSKITLLPHLGGNTTEALTHSANLILQNLLDFLENGTVRSSVNFPR VDLPFISPHRLTFFFKTQENVMAKISSLLNKRALPVMEMMNNNQNGFGYTIVNTDFSDFS DEQVTNLVAEFASMKGMLRVRKLDHSNIENWQTD >gi|238617813|gb|GG669608.1| GENE 27 31730 - 31924 144 64 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIIFALVLTTWSSLNLPFNVFITTAYISICTAPSVFLQGYFHHFPRKPEIDIYKLLLSVT ISQS >gi|238617813|gb|GG669608.1| GENE 28 32016 - 33137 1060 373 aa, chain + ## HITS:1 COG:BH2011 KEGG:ns NR:ns ## COG: BH2011 COG1062 # Protein_GI_number: 15614574 # Func_class: C Energy production and conversion # Function: Zn-dependent alcohol dehydrogenases, class III # Organism: Bacillus halodurans # 1 367 1 364 366 325 47.0 1e-88 MRIKAAVVNKKDGKFEMKDDVELADMQADDLQVHMVASGICHSDEALRKGTAEIGYPIVL GHEGSGIVEKVGPEVKDFKPGDHVVLSFYGCGNCINCLKGIPTQCLNYAANNLSGVRPDG SAHFTENGHDVADMFDQSSFTTTTVVRERNAVKVSKDLDLRQLGPLGCGYVTGSGTVFNT LKPEPGSTIAVFGTGAVGLAAMMAGRISGCTKVIAIDIVPSRLKLAKELGATDAINSKDE DAVEAIKKLTDGHGVDYAVDTTGVKKVMEDSIQALAQGGTTATIAVTDQHIDLDTWNDLC TSDRKIVGVNMGDSIPQVDIPRLIRFYKLGMFDFDKTEKFYKFDDINQANADSVSGKTIK PVLVIDNDYKPGD >gi|238617813|gb|GG669608.1| GENE 29 33245 - 34720 1370 491 aa, chain + ## HITS:1 COG:ECs2021 KEGG:ns NR:ns ## COG: ECs2021 COG1012 # Protein_GI_number: 15831275 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli O157:H7 # 5 483 2 478 479 521 53.0 1e-148 MAQNAVALKHYQMYINGEFKDSESGNMLTVLNPSTGEAISTVPSATREETKEAIDAAYEA EKSWKKVPAATRGQYLHDVVTEVRKQKDHLIEMLQEEQGKIKSLATTEILFSADYFDYMA SAARTYEGEILQSDNKNENIMIAKQPIGVAAGILPWNFPFFLIARKMGPALVTGNTIVMK PSSDTPNLALEFAKICDKVGIPKGVVNIVSGPGSVVGDELTRNKKIGIISLTGSVESGKR IMEGAATHMAKVSLELGGKAPAIVCKDADIDLAVQSIIDSRVDNNGQLCNNCERVYVQED VADEFIKKLSKKMSEITVGNPMKDEKIGMGPLINQAALDKVAGMVDRAVKAGGKITAGGH KLNIENGFYYEPTVITNVKQDSEIVQDEIFGPVLPVLTFKTLDDAIKMANDSDFGLTSSI FTENLDNAMRAANELEDGETYINRFNFEAMNGSHSGWKESGIGGDDGRHGIEEYLNTHVI YLQGHPEKANG >gi|238617813|gb|GG669608.1| GENE 30 34878 - 35513 348 211 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0379 NR:ns ## KEGG: Lbuc_0379 # Name: not_defined # Def: Haloacid dehalogenase domain-containing protein hydrolase # Organism: L.buchneri # Pathway: not_defined # 1 207 22 229 232 214 50.0 2e-54 MYKMIAFDLDGTVAETFPVIFDSFRKIVYKYTHKRIDDQTILATFGANEIGMLNQLIPNA PDRILNDFYQQYNASHATLTEPFSGINSLIDMLAAHHVQTPMVTGKGSVSCRISLETLGL QNRFSPILIGSSTGPNKSENFQRLLSQYQLASDQMAYVADTVGDIESCRAVGIDCYSAAW SKYADVDKLQEANATIFRSVNSLNDFLKKMI >gi|238617813|gb|GG669608.1| GENE 31 35562 - 35861 357 99 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0818 NR:ns ## KEGG: Lbuc_0818 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 99 7 104 104 131 68.0 1e-29 MPCNDNEITLTVDAVSYQYLALRRASLDVAPLDSVDVTLTDEPVDGHAYYEIAGFSVAGS ATLQNNHLKPGDYAVYRATPGDHPSMVIQLLGDTFNQNN >gi|238617813|gb|GG669608.1| GENE 32 36048 - 36554 501 168 aa, chain - ## HITS:1 COG:lin0623 KEGG:ns NR:ns ## COG: lin0623 COG0454 # Protein_GI_number: 16799698 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 4 163 14 174 177 84 31.0 1e-16 MAKIQMAEPKDADLIYRHLMKVSGQTNNLSYSQKDIHKYLDEIKISDQMHDANATVFFAA FENEEIVGLAQLSRRNLPRYINRGDLAVSVDQDFWNQGIGSTLMEQVIDWAANDWKLHGI YLDVISGNLHAIDLYKKYGFKIIGDLPLLMTVSGRDIAGKLMFKEIVH >gi|238617813|gb|GG669608.1| GENE 33 36580 - 37722 857 380 aa, chain - ## HITS:1 COG:BS_yqiG KEGG:ns NR:ns ## COG: BS_yqiG COG1902 # Protein_GI_number: 16079477 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Bacillus subtilis # 3 357 4 357 372 273 40.0 4e-73 MTKYKFLKPDTLRNGVKIKNRVVMSPMTEQSSFEDGSITSDEINYYRLRTGGVGMLITGC ANVNDLGKGFEGELSVADKSMLPGLSRLANAIKMNGTKAILQIFSAGRMTNSKVLRGQQP VSASAVSALRHGAETPRALSEKEITQTIEDFAKATKLAIEAGFDGVELHGANTYLLQQFF SPHSNRRADQWGGSLQNRMKFPLAVVDACADTIKQFADSPFILGYRISPEEIEEPGIKIS DTIALVSKLNKKPIDYLHLSLADAWGSSIVDRSDQQPVFEKIKVVLADDLPLIVVGHLAT PAQVEKLIDSGVSFAAMGRELIREPQWVQKVEAEDEQAIRYTFSLRDLNELKVTPPLLNF LMTAFRRGFPLSTDKHQLKR >gi|238617813|gb|GG669608.1| GENE 34 37787 - 37981 91 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227510072|ref|ZP_03940121.1| ## NR: gi|227510072|ref|ZP_03940121.1| hypothetical protein HMPREF0496_2235 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_2235 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 64 1 64 64 109 100.0 6e-23 MDLKNALFRLLVVIMRLIKSNLNKKINSVNDCLGAYKIVINYRLDNTFVYDKILPGSKGS GYDT >gi|238617813|gb|GG669608.1| GENE 35 37969 - 38823 425 284 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 [Kordia algicida OT-1] # 10 270 15 281 286 168 36 5e-40 MNPLLVNEKLAGFLKEDIGFGDLSVSYLPTDKVLTGYFIAKQSGIVCGQQLPQLAYNLIG EAHYTSLVSDGQHISSGQKIGKVVGAAATLLTGERVILNLMQRMSGIATKTAQVITELND PRIKITDTRKTTPGLRLFDKYAVTVGGGFNHRFDLTNAIMLKDNHIALAGGVKEALLMAK KNAGPLTPIEIEVETKQELQDAISIGADVIMFDNQDPSTIKKWKKLVPDNIHVEASGGIS EDTIASFSGCGADFISIGNLTNAVSPLDISFLVEGTVKKSVHVS >gi|238617813|gb|GG669608.1| GENE 36 38820 - 40004 1114 394 aa, chain - ## HITS:1 COG:BS_yceI KEGG:ns NR:ns ## COG: BS_yceI COG0477 # Protein_GI_number: 16077364 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 15 391 15 398 400 301 44.0 2e-81 MDNVKQRTTSLVFLIIGTAWMFDAMDVGLLSFIMSIVHKQWALTNSQTGLISSISTVGMV CGGFYFGHLADRIGRKNTLIATLLTFSIGNLVLAGSPGFYTFLTIRFIVGMGLGGELPVA ATYIADIYKGGKRSQMLILADSFWAIGWLIASFLSFLLTPVLGWRGLLIVTAITGFFAII LRKHIHESQPETSSSQNWLVSLKQTFRPWTLMLWLAWFMVMFSYYGMFMWLPSIMVDKGY GIVNSFGYTTIIVVAQLPGYFCAAWLAKRLQVKYVFALYMLGTAVGAIMFGQSTTAVMIV ISGCVLSFFNLGAYGAIIALTPELYRNDIRGTMTGMAQGIGRIGAIFGPLLIGVLMDRQI NIHVIFIIFMISLIIGSVAVLALPTSPNHEEKIQ >gi|238617813|gb|GG669608.1| GENE 37 40263 - 42623 1466 786 aa, chain + ## HITS:1 COG:BS_yjcD KEGG:ns NR:ns ## COG: BS_yjcD COG0210 # Protein_GI_number: 16078247 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 25 443 136 523 759 137 30.0 8e-32 MQQSAVNLSRDQAINLLESATGMTFSTEQLAILRQPYQQPTLINACAGSGKTTIFMLSAL VAIMTGKISPENVLGITFSKKAQTDMENRYRQYLMQLKAVGIDLAAEGMPYFSTFHALFY RLLRTTPEFRETKVLTSYRQFSLPLTRLIKHTHSQVNSPSEILDNMFELAEFIINRGISH NAFADLSDPKQLKAQLGEVGEDEYDLDFYTDYLAVMTQYMILKRQNSFVDFNDMKILLRQ LLDQPDHVRSFHQIMSRFKLVVMDEFQDIDNLQWDIMTRLLSQEALSRLIVIGDDDQSIY SFRGSNPKFILKFHGILPGAKTYRLSTNYRTGGQILSEAKPLIKHNYVRLAKELKAFNEK KGQVHVYPLKTAGFDPNSDMFTKLVSQIRDPEIDNHQIAVLVRYNSDRTLVADWLANQQI YVNINNRGAIFQHTLIYRILVNLMQAFWQNRFQPFHEQATRIGFTTYRRHVTEIDKAAGG IDSLSDYLEIATKYNLQHQRTENQKRFAKIDTRVRMAFKIIKEQRQDVEKANSETSIGDV FMQIWNTVLELTATYFDYMTKNDFVSKDTFKDMTTYLHTEIKQITDPDVWFDQEDQKRQL LEANNQKGVSLENDVQFLSLHQAKGLEFKYVYLYGLSDKQLPVGTTIINDWFHPDISFED FIDRWNDLVTRQRVKELTGILEAAFIDITEEVRKNKHIDLNHIEIEKCHDLDLDLLHNWY TAIRHYSQFIEEERRLIYVGMTRAKTVLNVSVGLNASPLLRQVPIVSKVMQAEKEKKCKA KSDDHK >gi|238617813|gb|GG669608.1| GENE 38 42717 - 44156 861 479 aa, chain - ## HITS:1 COG:SPy0713 KEGG:ns NR:ns ## COG: SPy0713 COG4690 # Protein_GI_number: 15674771 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Streptococcus pyogenes M1 GAS # 9 458 9 457 472 429 49.0 1e-120 MKTTRNISSCTAVLVGKNATVDGSTMIARNEDAGSGINAKRFIVVKPEDQPKDYISTFNN FRLKLPDKPLRYTETPCADVSDGLWGESGINTDNVAMSSTETEFTNTTMLGLDPLVDDGI GEEAMLTVVLPYIHNAREGVRRLGDLVTKYGTCESNGIAFSDQDEVWYFETVGGHHWAAE RIPDDTYVIAPNQTGIQEIDFNDPQHFMFSDDLKKFAEKYHLNKASKGFNFRDIFGEDVQ SDHYYNTPRVWYGQKHLNPEIVQDPESRTMPFSRVPSHLVSIEDVAFILSSHYQETEFDP YGKTGTSETRSRYRPIGMNRNQEMHILQIRPDFPADHAAIHWLAEGVNIFNSPVPFFANC LDTPENFKNTPERTTTESFYWLNKLIAMLADPFFAEHDWDAMTAVSESRKFGFANGRKAV AKADQAFENVSKNDLPEWHTKMNDKIAAVITNNLKDLLHQLVLLRAEKMVPTFEKGGEL >gi|238617813|gb|GG669608.1| GENE 39 44338 - 44793 386 151 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0823 NR:ns ## KEGG: Lbuc_0823 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 149 1 135 139 114 50.0 1e-24 MFKSNLVLPIIAAGLMFTATVEISTSAKAATTESMPGSLTYHKTDQFATIGSNYKSFKLY NHVPTSSYKNIKTISWKKARMSSYGIVNSAVHIDLYAFQGTQYNWYRISKANVLRGKVKT HSTSAKQKVQKYWVYGQALIFPKTTTTSVFS >gi|238617813|gb|GG669608.1| GENE 40 44956 - 45855 446 299 aa, chain - ## HITS:1 COG:yi5B KEGG:ns NR:ns ## COG: yi5B COG2801 # Protein_GI_number: 16131429 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 19 297 13 277 283 120 30.0 3e-27 MTESKLAFEEIKNPKQISLNRIIQAAGVSRRAYFYWCSGGRATNPDPAKLNELILSQIKV EFEQSNRTRGTKSMTAAINVWLECQGLPKVNHKRIYRLMRQSGMISVIRKKRPGYHKTQA DYIAENTLDGDFERKGINEVWATDSTFVTYGKHDEMSIWLCGVIDLYSHEILGSSLSKTQ TTVAAKEAFNQAYASFPDAKPLVHSDRGSAYTSKEFRNYLRDKSTGQSMSRPGTPSDNAV MESFWAQFKTEWLDQCPEHFETLEELAEYIQAGLTYFATKRRTVKNNGLTPKELRNQAA >gi|238617813|gb|GG669608.1| GENE 41 45912 - 46607 478 231 aa, chain - ## HITS:1 COG:no KEGG:LAR_1016 NR:ns ## KEGG: LAR_1016 # Name: not_defined # Def: putative transposase # Organism: L.reuteri_K # Pathway: not_defined # 1 229 1 225 237 140 41.0 4e-32 MPRKRKYDLETMLWAIAEIEKGRTILSVSQELDLYKGTVGFWRKTYLAGGEEALRSSHKN KHYSAEFKIEVVTYYFEHDISVRACALKYGIKSSQTLSDWIFQYNEGNKLKATGQRGALM TGKNSQKARSFKFEEKINIVEWLLKHNSDYLGAVRKFKASYQQVYSWLKKYRENGPDGLK DRRGRKVPEKELTEVQRLKIENRLLKAKLEDDEIREALAKKVREIERRDRH >gi|238617813|gb|GG669608.1| GENE 42 46701 - 48209 1098 502 aa, chain - ## HITS:1 COG:PAB2342 KEGG:ns NR:ns ## COG: PAB2342 COG1892 # Protein_GI_number: 14520233 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in archaea # Organism: Pyrococcus abyssi # 5 444 2 437 469 267 36.0 4e-71 MDRKIPNIMGTQHPDNAGVPFFKNHDNPFISAYREIDEAYENFSTLDADEYMWDWEGKHA DASVIDRLYSEHYDYFKKHQLGRDKFLTFRFPNIWEEKGYSLMQAMTTILSAEDFAKDLG FDERPLFEAILPMTQSADQLIEMEDKFSSLAHYKSKEFNTGHENSDTLQMIPLFEGFQSQ LDAPEILEKFIEMYKKHFGRDIEYMRVFLAGSDSALSNGFLNSIIGNKLALSHLAKFEDK SGMPIYPIAGMGSTVFRGGLSPLMLDRYLEEFPGLKTATIQSAFRYDYPLDVVEPAIMKL REGLQQSKFQIIPEDDEKTLLEIAEKAAKEYHVTLDPLINDLQPVFDAFPKRRDRHQHVG IIGYSRDVDGYKMPRAITFTGALYSIGVPPEFIGVGRVLTKLSDKELTVLRKYYHNIKAD YEHVSHYFSKEALTELQRKNPAWKAVDDDIEGIEKLFDIVAGPETEEEEKHAQLASDLVK ISDDTTKTALIQRQATLRKFLG >gi|238617813|gb|GG669608.1| GENE 43 48462 - 48893 351 143 aa, chain - ## HITS:1 COG:no KEGG:LCAZH_0456 NR:ns ## KEGG: LCAZH_0456 # Name: not_defined # Def: putative redox protein, regulator of disulfide bond formation # Organism: L.casei_Zhang # Pathway: not_defined # 2 139 3 140 142 194 67.0 1e-48 MDPRWHQALYRTEGINSEGLEGHAYVPDGLNVKTSSPLNNHPGTNPEQLLSLSLSTCLEA TLEAIERERQLPHISEVRVQVAFIGARAHYEFLVNAQIKVASVDFETAKSMTAEAERRCC VSQLLAGSKNYTVETVKEFSQSK >gi|238617813|gb|GG669608.1| GENE 44 49092 - 50948 1041 618 aa, chain + ## HITS:1 COG:SA0868_1 KEGG:ns NR:ns ## COG: SA0868_1 COG0475 # Protein_GI_number: 15926598 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Staphylococcus aureus N315 # 1 397 1 396 399 249 39.0 1e-65 MNQLSLVIILLAALLIPLAMARFKITFLPTAVVEIIVGVILGPSLLNLIQINSTLDLLQN VGVIVLLFLSGMEIDFSLFKRRSTRLSPLEEKGKKQAPKYSVLTIAFLGYLSIIAMSIVM GVGLKLSGLFQDVFLSSILFMTISLGIVIASLKEKELLSRPFGQTILLIAALGEVVPMVG LTFYASAYSPNSKSLWLILLILVAAALLFLRFKPFFKLFDKINKSTTQLDVRLAFFMIVT LVTVAESVGAEGILGAFLAGIVIKLLEPHEETKVRLDSIGYGFFIPIFFMMSGVNLNLRQ LISHSQTLLMIPAIFGAYIISKALVYFALKMRFKTSNAVAGTAMSATTITVVLAVLQVAR HLHQINSQQSGAFLLAAILTCVIGPLMFNKGYSAETEDLKKTTVHFIGTNLTTVPVAQQL AKGWYDVTMYTNNQHNYRAFNSEVSIKLLDNMETGFMVNQGVFDADIVVMGQLNSKKNYE LARAAKKYGVKRVIVRFEDRNILNDKQSELESLGVEVYNTPDVNISMLRSLIEAPSTMRL MTSTEASVYEVALRNSRYADIQVRNIPFIDKITITQIYRDKRFIRPTGGTSLKLNDRIIF TSSKQQAPEVRRELGKLN >gi|238617813|gb|GG669608.1| GENE 45 51021 - 54644 2745 1207 aa, chain + ## HITS:1 COG:SPy2010 KEGG:ns NR:ns ## COG: SPy2010 COG1404 # Protein_GI_number: 15675796 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Streptococcus pyogenes M1 GAS # 299 749 466 948 1181 126 26.0 3e-28 MNDLVKRLCIKKGFIGVFVSAGILLTLGLLIGFSSPVGAGRVSIDLPVYAKGRNENQAAI DKGNVPKLWQSGNRGQGMVVAVIDTGIQPHKDFRLTSPGTAKISKADAQRMIAQKGYGRY VNSKIPFAYNYASNSNQATEPDDVSGFHGQHVAGIIAANGRYTKKQHEYVVGVAPEAQLL DLRVSDMIDDENKNDVARAIHDAVDLGANVISISLGISLPNQSFTDEEQAAVQYAINHGV FVSLAGGNYGNSASIFTSNPLTNTNGINTAYQEANSGTLADPAVSANSMTVAAENSLKGS QNEMASFSSWGPTPDYTLKPDISVPGMGITSTWQNNTYAMLEGTSMATPFVSGAAALVIQ KLKQSQPDLSGSQLVSQTKNMLMNSATPMKDVNYPGNIVSPRRQGAGQINVTAAANLKAT VQDPATGIGSVSLGQIGGSHSFKVELSNHGSVPINYAVDNDGGPMTQIRDQKKDGQVHDI SLTGASLTSDQSNIVIDPGQRKTLTLSLSISPTVKPNQVVEGYLHFKADQPGQSLSMPYL AYYGDTTKEQVIDSPAFMPNSAFHGGYLMDENNTPLGISDRVSLSAYVNNHDNKTNWRKV ASYIHPARVAFSPNGDHHQDSVTPFVFAKQSLANVKAQIVNDQGNVIRVIDQETDTDKSI ANDSGNLDLSTSFSMRQNPKALQWNGRYIDQSTGKSIVVPNGRYHYQLVTTNYNDGADQQ QLASYPVEVDTRAPQATAVTYNRKTGRLTGQFNDHGAGFTGISRGILSTNGHQFGIKLTK KAALAGQFSDRLTSIVKQMLMKHQANLTLTDIAGNSTKVAVHRKLSGLVTKKANVSFDRA PQLKWFKYGTGKNASSSYLEISNKKVFTLYARVPKGVPALNAYAKDTGTNKVVKGRLNPK TGVVAFTCHFSQTGYETIQGWSQVPQKKFGAYLKSPSTLIVVSQLPKAPLIAKLKKTTPK LISNAQAQKKTKSIFGSPIPNGHKTSQLTYRRAPSKGIKFFQLHDNASTFLNAANSATIY DLQTHQLTINGQISSPNKQRLVILATPDETDPANRVRISKNGTFKFKVPFNPTEQRGVGY NLYTKTILRNGQSKVQKQRGILEIYLDVVKPSLAVSENVENNRIRLTGTVNDNVSGVKLD VNGNNLFSQQKDAGFNRHDQNQPLNPYPDYQINQSYDLTPGRNTFTVKAIDQVGNVTTKR FVANGHG >gi|238617813|gb|GG669608.1| GENE 46 54797 - 55714 960 305 aa, chain - ## HITS:1 COG:lin0622 KEGG:ns NR:ns ## COG: lin0622 COG0604 # Protein_GI_number: 16799697 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Listeria innocua # 1 303 1 310 313 141 33.0 2e-33 MKAFGYEQNGGPEVFKEYQVPIPEISGNQLLIKTQAFNLNNFERAQRAGEFKATDHRIIP GRDVAGIIDQVGSDVSGFKIGDRVVAHGHHSYAEYAIGEDTNTVKLPDNVSFTQAAGIVT PGLAAYKGLHLFADVKKGQTVIVKGASGGVGSIAAQVALDLGAKVIGVGASRNADYVKSL GVSQYVAYDQQDPAEVLADAADVVLDAALNGNGNDSDVHIVKNGGIIATVGDAEPATNKD VSFKHIHPTQEISDTTALAALLKLMSENKLSIKIGYQLPFTIDGVIKGHQILESKHDGRV VVSKD >gi|238617813|gb|GG669608.1| GENE 47 55935 - 57140 811 401 aa, chain + ## HITS:1 COG:PM1846_2 KEGG:ns NR:ns ## COG: PM1846_2 COG1263 # Protein_GI_number: 15603711 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Pasteurella multocida # 11 382 8 381 384 350 48.0 2e-96 MLQSVILKKTKNGFLNFINLLADIFVPIIPAIVAAGLLMALHNVLSAPHLFMNDSLITAY PNLKGFAAFINVLANAPFAFLPVLIGFSATKRFGGNPYLGGAMGMMMVSPALVNGYNVST ALASHQLPYWHFLGLPVAQAGYQGSVIPMLAVAWLLSVIEKQCHKRLPEALDYTFTPLIT ILVTGILTFVIVGPVMRDVSDGLTSGLLWLYQTSGAVGTGILGLFYAPLVITGLHQSFPA IETQLIANVKQTGGSFIFPIASVSNIAQGASALAVLFLTKDKKQRGLASSASMSALLGIT EPAMFGINLKLKFPFVASMIGSGVASVYLGLTHVLAVSLGSNSVLGFISIATTAIPSFLV SCVISFCVSFSVTYLYGRRQEVTEMLQPDGDEKPNEAMAAN >gi|238617813|gb|GG669608.1| GENE 48 57221 - 58969 1792 582 aa, chain - ## HITS:1 COG:L0199 KEGG:ns NR:ns ## COG: L0199 COG0028 # Protein_GI_number: 15674026 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Lactococcus lactis # 1 578 1 566 567 474 42.0 1e-133 MVKMKAGQALAKVLVSWNIDHIYGITADSINNTVDGLYQERDHINYIQVRHEEVGSLAAT ADAKLTGKVGISFGSAGPGATHLFNGLYDAKMDHAPVVAIIGQSATPIMNTYFFQEMDQD PMFVDLTDFHKQVTNPEQIPYVMDEAIRYAYQTKGPAIVIIPDNLSGEEIDFEPFKTAKT LTSTTTKITDQSAVEDVYNLLKQAKRPVLWAGLGMKDARQEMIDFSEKFSVPVLTTAPAT GIMPTDHPNYMGARGRLGTKPGFEVTQAADLIILAGTNYPFSRFLPQGIKFVQINNNVED LGKQRDVDLAVLADAKPFFAKLNTMGEAVAPTPFLKAAQKDKQNWNAWLDKVADDDSNGL SPEAVIRAIKENSDDDAVFGLDVGNNLMWSIRQLPFNHDQKLSMSAWFGTMGYALPAGIA GKLSYPDRQVFSIAGDGGFSMTMQDLLTQVQYNLPIVNVVLENKAFGFIQHEKITANQEP YGIHFIGADWAGFADSMGAIGLKVTDRQSLAEAFKKVQELQAAGNTKPILIDAKVKNQDP VDTSFMPIDPEKFDKATIDAYNKQSNLFDQPPFSELLKNESK >gi|238617813|gb|GG669608.1| GENE 49 59537 - 60307 359 256 aa, chain + ## HITS:1 COG:L51063 KEGG:ns NR:ns ## COG: L51063 COG1085 # Protein_GI_number: 15672818 # Func_class: C Energy production and conversion # Function: Galactose-1-phosphate uridylyltransferase # Organism: Lactococcus lactis # 4 255 8 259 261 278 52.0 6e-75 MNQPLKFDYNAAKGKPENIRHPKGYCPFCDVAHLTNILAQEQDRIWLVNKFRTLEDTFQT VVIESSDHEGGPSIYSIEQNRQVFEFAFKCWQKMIDSNQYTSVIMYKNFGPLSGGSLRHP HFQIVGLNDYDVYQNISVENFTGVFVSNQPQREITLSTHPIIGFVEINIAINGVENIDAL ADAAHVMIDYLLNDYMGGRLSSYNLFFYKINERFYCKIVPRFATSPYFVGYKISQVQNMQ RLKEIADEIQNKLMKV >gi|238617813|gb|GG669608.1| GENE 50 60407 - 61129 672 240 aa, chain + ## HITS:1 COG:L143350 KEGG:ns NR:ns ## COG: L143350 COG1028 # Protein_GI_number: 15672128 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Lactococcus lactis # 4 234 2 234 261 145 35.0 5e-35 MVNKAFVTGANRGIGFEIAKQLAEHGYFVIVGARRLESGQQAVNKLVEAGISALQLDTIQ IDLTESQSIAEAAGKISRQHPDLNLLVNNAGIAGDMAKPALETTVADYQQTLNVNLFGTL QVIQKLVPILKNNHGRIANLTGPFSATLWYNPAAYRVSKIALNGLIQTLAVDFINQKLPL SIFSIFPGGVSTDINGHRQGPFMKTVEEGGQLVTNILLDGQSHNGDIVGPNGHVLSTVDQ >gi|238617813|gb|GG669608.1| GENE 51 61215 - 62255 842 346 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0829 NR:ns ## KEGG: Lbuc_0829 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 344 1 344 344 417 64.0 1e-115 MAIKTTVSELAKLPDMNAPVITLNLNLNKLAYDANEQLRVKNILKEIQKEIGPSIDSFVN EVNDLIRQELPYDGITMISDRSGSNVYYLIRTSVDEADYHTDNSIDFLLLLSASPNADYT LLELNRDNSKLYQLQNKRVSPLAVENYPLTVQDALGTELRGGELNFSGRGGQTQYHGHNE TSQEKQIDQERYYHVLEDLLKDDPSLREHDFILMGLPQNINLFKKLNKALKLADISIDQS VQSLAPDKIAELVNKKIEDYNNTHSNEAITKVFRDKLFTDLNTIQNMLNSDQVRHLFVAS RDEINGHDPESYAKINVMIKQALAQDANVSVVKEQPDMPLVSAVSH >gi|238617813|gb|GG669608.1| GENE 52 62576 - 63973 1397 465 aa, chain + ## HITS:1 COG:BH2730 KEGG:ns NR:ns ## COG: BH2730 COG0277 # Protein_GI_number: 15615293 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Bacillus halodurans # 51 462 43 456 470 278 38.0 1e-74 MAVFTAYNHDQIIDFLKQQAPHAEIHIDDETAVKHTANGNAESSISGQILAYVAVGDKDD IRGVLKTAQKFHLPVVPQTADTSTVIGADGVNGGIILSVARLNHIKEIDKDDSLAVVEPG VINQDLDKAARKQGMFYAPDPASKPMSAIGGNVSTNAGGLSGVRYGATKDSVLGLKVMLT NGQEIKLGGRTFKQAYGYDLTQLLVGSEGTLGIITEVTVKLFPIPIGKTITGMAFFDDMA KLAEGVKAIRNSGLYPSMLEALDGKTVKALDQYEHTSYSQSDTSSLLIFSIDSASDLKLQ TSKKILDEQGAWNVQITDDPEKAKSLIKLRQDMLPAVFSNAKYYIMEDMAVPLSKLAEMV KYIAQVGTELDVDIYTAGHAGDGNLHPSLLWNDQPTPPERVIEATRRLFRKTLALGGTIS GEHAVGMSKNQWTNEELGDSVDVLQHQIKNLFDPMGILNPKRKIN >gi|238617813|gb|GG669608.1| GENE 53 64050 - 64340 360 96 aa, chain - ## HITS:1 COG:BS_ycnE KEGG:ns NR:ns ## COG: BS_ycnE COG1359 # Protein_GI_number: 16077455 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 95 1 95 95 70 38.0 5e-13 MKVINVELTVKPGKQKEYEAFIDKLVQGSREEAGNISYNHFKKVGTDNEYEIIEHWKDAD AVAFHNDTSHFQAFLSGVGAYLTKDPVIIRMDYQEK >gi|238617813|gb|GG669608.1| GENE 54 64541 - 66952 2120 803 aa, chain - ## HITS:1 COG:CAC1343 KEGG:ns NR:ns ## COG: CAC1343 COG3957 # Protein_GI_number: 15894622 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoketolase # Organism: Clostridium acetobutylicum # 12 799 7 794 796 960 57.0 0 MANSTDSNQALKERETDYSSKDYFNLMTKYWRAANYISVGQLYLKDNPLLKRPLTKADVK FHPIGHWGTIAGQNFIYTHLNRVIKKYGLDMFYIEGSGHGGQVMVSNSYLDGSYTDIYPN ITQDEKGLQRLFKRFSFPGGVASHADAKTPGSIHEGGELGYSLSHGVGAIFDNPNVIAAV EIGDGEAETGPLATSWFSNVFINPVNDGAVLPILNLNGFKIANPTILSRKSDEELTKYFE GMGWEPTFVEGDDAGKLNPVMAKAMDSSIEKIHAIQNQARESSADDATRPVWPMIILRAP KGWTGPKMWDGKPIEGSFRAHQIPIPVDSEHMEHADALVEWLKSYKPEELFDKNGALKPE IKATVPVGHSRMAANPITNGGKDQKQLDLPDWRNYALDNSKRGAGEERQDMVELGKFFRD VIKNNPKNFRLFGPDETASNQLQEAFAVTNRQWMEPIHNPYDQWMKADGRIIDSQLSEHQ DEGWLEGYTLTGRHGVFTSYEAFLRVVDSMLTQYFKWIREANEQPWRQKYPSLNIISSST SFQQDHNGYSHQDPGILTHLAEKKPRYIREFLPADANSLLAVMHKALNMKQTLNVTIASK HPRPQFYSVQEAEQLVDQGLKVIDWASTTKPGEEPDIVMAAAGTEPNLESLAAIDILHQQ FPDLKIRFINVVDLLKLHSPQFDPRGLSDEEFDNYFTKDKPIVFAFHGYEDLIESLFFNR HNHNLHVHGYREDGDITTPFDMRVLNHLDRFHLAKEVAEDVYGDKSSEFTSHMDDKLQQH HDYIRETGADLPEIRNWEWKSLK >gi|238617813|gb|GG669608.1| GENE 55 67266 - 67397 117 43 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227524239|ref|ZP_03954288.1| ## NR: gi|227524239|ref|ZP_03954288.1| hypothetical protein HMPREF0519_1948 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0519_1948 [Lactobacillus hilgardii ATCC 8290] # 1 43 9 51 51 67 100.0 2e-10 MQNQSDQNLDLYRELVKEKDLVEKQNTVKAYGFLAMLYMYLGE >gi|238617813|gb|GG669608.1| GENE 56 67628 - 68896 664 422 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227510095|ref|ZP_03940144.1| ## NR: gi|227510095|ref|ZP_03940144.1| hypothetical protein HMPREF0496_2258 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_2258 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 422 1 422 422 824 100.0 0 MVKRETDRDVIAELADNNLITGTTAGDYLVRKQRGGLQGKKDTALHAWEKFAHKGSRVNL ALVNQLTLIFKNGEKLVFDSKDVSFLILEKDLDNPTLLTGFVLVLNRELSVQANHYFVGG RDAFEHLKKVQDVIDIELTDSQNNTSRHIVHWSPISDPLVENVNQRFVDIDDALFLYTVS KQRYSMVDAVKAALYTENFNAIIKEFRSKRPESSLTDSRHEFTVQLEEMLQAVSTDQSQV QRRLEDELLVGKVHTDSDQTFFDHWEPVLYHLKSKEKFLGIDLLSYDVLMMMNVVIPEGD FWKGFTWLLWEISRYGIKTEERQKAIDNAKQKLQEQTDQISEFTKSTQRMRDFISWYVNN HLSDPTLPDFVEKYWPLTKGRKEKFWNNGGHAFVMEQNPKLLNEFMANFGADYYQFKDVD TD >gi|238617813|gb|GG669608.1| GENE 57 68980 - 69723 703 247 aa, chain + ## HITS:1 COG:L87497 KEGG:ns NR:ns ## COG: L87497 COG2365 # Protein_GI_number: 15673818 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Lactococcus lactis # 5 246 2 244 248 182 43.0 5e-46 MAVELTNFRTLGGYPAADGRIKDGLLYRGGQIADLDQNQILYLKDKLAISRVVDFRSQAE RKQYPDSVWGGVDYDAIDVLVDAKKSGVSIEGMINNAGDISQVMLATYAQLVTSPSAQKG YHQFMTALVDDPKPTFFHCFAGKDRTGVAAALILKTAGVSDNDIFEDYLKTNESRKKANK QIIHQLADKLTTGQQKALSQALVVDRRYLQHFFVTINQQYGHFENYLKEGLGLEKGFISE FRHQYVV >gi|238617813|gb|GG669608.1| GENE 58 69793 - 70191 494 132 aa, chain + ## HITS:1 COG:SPy0844 KEGG:ns NR:ns ## COG: SPy0844 COG3576 # Protein_GI_number: 15674878 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase # Organism: Streptococcus pyogenes M1 GAS # 4 128 2 126 133 137 53.0 7e-33 MAKLNQAMKDLIAGELSYIATVDADGNPDVGPKISMRVLDDEHLIYNEMTGGQTQANIND NGKVIIATANAKALKGFRFGGTAKLYTDGPYYEQAEKWAEGKFPVPKGAGVINIEKIWTL DPGPKAGKIFEE >gi|238617813|gb|GG669608.1| GENE 59 70337 - 72094 1621 585 aa, chain + ## HITS:1 COG:SP0730 KEGG:ns NR:ns ## COG: SP0730 COG0028 # Protein_GI_number: 15900627 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Streptococcus pneumoniae TIGR4 # 5 585 6 587 591 506 45.0 1e-143 MAETINSGIAALRTLESWHVDHIYGIPGGTVNNLMYALDAEKDRIKYIHVRHEEVGALAA VADTKLTGHIGVAFGSAGPGATHLYQGAYDAMADKVPVLFIVGQNPQALMNQDFFQEFDE NPWFKDAGVYARTVMTAESLPHILDEAIRRAFAQHGPAFVTIPNDLSNKEIPADGYYSSA ENFAKPVLGAGSDDQINQALELISKAKKPLIYVGQGTIGAADEVMQFAKKFQMPVITTAL GKEIIPYDFEALLGSAARVASKPANEALQETDLMLFVGSNYPFAEEMFKPDVKFIQIDSN PQVLGKRHKTDVAILADAKKSLQRFIELGKDSAPSDWYAANVDNVANWHQYNDDMMNRTD GELRFEPAFKEINRISEDNAIYSIDVGDVTQNAVRLLKVNGKQPWITSGLFATMGVGLPG SIAAKLSYPNRQVFNLAGDGAAAMVMQDLSTQVAYHLPVINVVFSNDALGFIEDEQEDDN HEWFGISLPQTDFAKVAEAQGMTGITVTKVEQMKPAFDQAVELTKAGKPVLIDVKMTNER PIPVEKLTLDPDKFDEKTINEFKKRYYADKLVPLSEFLKKHGVRS >gi|238617813|gb|GG669608.1| GENE 60 72216 - 72932 204 238 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227513028|ref|ZP_03943077.1| ## NR: gi|227513028|ref|ZP_03943077.1| hypothetical protein HMPREF0497_2150 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0497_2150 [Lactobacillus buchneri ATCC 11577] # 11 238 40 267 267 417 96.0 1e-115 MRLWHRWLLLGLRIGFIALWYIMFALAAVGLNEVHISSDGDNWGVILILWILLFQWFLIV IALPAAFLKKKKSLFILTGLMVILSVTFFGDIFHPELGNVTLSQSANNLLTLIFPCVLVV TAWYFPVLLGCHLGDQHHRLTVWIILPSMLSVISLLTPSGATRLFLLGDGHMIGAAKSKL VVNTYKLKERSHPYAVYSTRNPRIKTYDNEMVWDLQIKVSRYGWLYIPMDNDSWTEGA >gi|238617813|gb|GG669608.1| GENE 61 73119 - 73616 425 165 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0839 NR:ns ## KEGG: Lbuc_0839 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 159 1 159 160 200 72.0 1e-50 MQNQTPSRMQRNQTTQQTKKTKHTKLIVVVIVLLVLLGGFLYIGHQIHELSDAQRQTNTI LDKPIKNTVVKIVKPKVPAEIRPQVVQIIEQEPLYRLQQAANNPGTFQEIANKYQVPEKY VYPAKQYWFSQGNQTLRNDIYHAQLLQLLSELRQLNDSSTNSTSQ >gi|238617813|gb|GG669608.1| GENE 62 73832 - 75823 1635 663 aa, chain - ## HITS:1 COG:SA2228 KEGG:ns NR:ns ## COG: SA2228 COG0025 # Protein_GI_number: 15928018 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Staphylococcus aureus N315 # 9 652 9 684 692 259 29.0 9e-69 MDEVLLLAIILAAVVLANILARYFTKIPLPFFLIFLGVLLAGLPVYKNFHLDPSTFALAV IAPMLFNEAQNSSRLWIGRSITNILSLAVGLVLVSVLVVGAGLHMVYTVLPISLAFALLA IVTPTDASAVNSIFESNPIAEEQAGILQHESLFNDAAGIVVFDMSLAAFISGTFSMELAV GMFLWEFLGGLLFGSLIGVLIVSVRLFLIRYNDDTPLIMVLIQLLTPFLVYLLAEKLALS GILAVVAAGLAQGSEREKLRLTSSRMQLITSNVWEIISGMLSGTVFVLLGLSLPEVITAM QQSPNPNFGVYKLIGIGVLLYLAKGIIRLFWSRYLIKRRVKTSHEWRDSLVMAFSGANGT ITLSLAFSMPEVIHGQPFEFRGPMIFLAAVVIFISLIMPTIFVPLLLPSQDNNQPRYRWV RRMLQAAISDLVKEKEHPEEAQIVIDSLQQQLVLDGTPNLKLRRRLMSESHQVELRAVQK LHDDGKITDDELFYYGKFLQLNNFSADEKIWKNVLLRIRFSLHIGTLYKDMNRAQDAFLT APVILEEVYWREQFKKHGEDILPIEQVGFDAVMAFLKTKDVESGVESNMVKRFYRTRHRR IHGKDVNADIVYQMFMRAFHSEYELIQEALSTGKINSSLAEKLQQRISIDEMTYLQNTEI FSN >gi|238617813|gb|GG669608.1| GENE 63 75950 - 76141 139 63 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRPSFPLDIPVLFMLYFMTVPNHGEFVTIGAFAFRRSKRLAIFVSLFIRIGSPQPDGHIK DFD >gi|238617813|gb|GG669608.1| GENE 64 76198 - 76737 401 179 aa, chain - ## HITS:1 COG:BH0719 KEGG:ns NR:ns ## COG: BH0719 COG1309 # Protein_GI_number: 15613282 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 4 172 6 176 188 84 32.0 1e-16 MAEDRRQRKTKKSIQEALIQFLQKKPLNKISVAEIVHEADISRSTFYLHYDDLYDLYDQL NNHFLDGLFESFETYYPTTQTESYFELAQRLINYIDKNKTLFSIFIKENTVSVVNRLSNI FVDKVMQFEKINKDDLQGYYEIVWSVRGMMGIVIEWTQHDMKPDKDDFIEIVRSILDKL >gi|238617813|gb|GG669608.1| GENE 65 76956 - 77861 596 301 aa, chain + ## HITS:1 COG:no KEGG:BBIF_0346 NR:ns ## KEGG: BBIF_0346 # Name: not_defined # Def: conserved hypothetical membrane spanning protein of the cation efflux family # Organism: B.bifidum # Pathway: not_defined # 4 294 5 302 302 204 39.0 6e-51 MNAKRIEQQSLNRGVIINILMGSAGMLVYAFTHLEALFLDASFVLIEVISGIVAAAISRI SQRKTKQFPKGLFILEPVYVFFKSILIIFLMGFTTWSVSVKAYLFFTVGQGTKINVIPVL IYAIVMVILGSWLLTMYRRGNKKMKGASEILTVESKNSFIDVMMSIGIAFVAMLLVFIPS GSPLSFLLYTGDFFITIIIVLMFIGQPIGFMIQSVKEILGAELPAGPTKHTIEAIVSKHV SNCKKIFIFKKGMHIQVDVYLSPGMGACALNSIKLIRDNLIAIFQLVDVDFMIDSQRENK Q >gi|238617813|gb|GG669608.1| GENE 66 77884 - 79359 946 491 aa, chain + ## HITS:1 COG:STM1094 KEGG:ns NR:ns ## COG: STM1094 COG4690 # Protein_GI_number: 16764452 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Salmonella typhimurium LT2 # 20 490 13 488 489 274 35.0 3e-73 MKLYEKIIIGALTSLTFFAGALKASACTTVIVGSKATKDGSTIIARNEDNSTNWAKHFIV HAHTDTGQTTYVSKGNQFTIRLPKIHQRYTSTPDWTQKHGQYGEDGINESNVAMSATEST DSNRKAIKADPFVKRGISEDAMLDVVLPYIHSARQGVIRMGNIIRKSGAAESDGIIFSDK NEVWYMEIGAGHQWAAVRLPANRYAIIPNQLRIGRLRLKNHKKYLASKHLVSFVRKHKLL GYSKGTVNFAKAFGTSNKADRQENNPRIWDGQRILTPSKKQSPDQRSFQMFMKSDKKITV QKVGQVLASHFTNTKYDSKGRWLNKFRPINMPMNDESHILQIRPHVAKAISGIQWLAMAS PDTSVYVPFYTDINNTPVTYQIGTDRYDSKSAFWTYKLTGVLAQPYPNSFTNRYIRPIQR KVNRQLLRHLKNSDKQSSAIAKTADLQTYLTASNQANAVLAQKQFDELNANLITKSTSEV FKELHINVSKG >gi|238617813|gb|GG669608.1| GENE 67 79571 - 81394 1173 607 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0544 NR:ns ## KEGG: Lbuc_0544 # Name: not_defined # Def: lipoprotein # Organism: L.buchneri # Pathway: not_defined # 424 602 498 668 672 159 49.0 5e-37 MKKFEYSLLALTIALGVSFLQQGSKASTSPETGTRSSQIVESRETLDSWMPDKGLQQDIL AYLKKTSQLPKDATLEDITKEVAKNNRYINIDITNPVSSLQGLEFFNGMFSIGFLTFRNT KVLFPDLSYLNSNLSNSYHQLTTQYDNNGFNDLSQTLNQIKQQLSTREDLGKLHVVYLGF THQHFTDISPWYGFSQQYSNLSLYQNGFWGFNNNTAFAEAQLEENGDIVLKNPLYIFDDQ GNRISLTDGITATNNGSYDQGKNEIIWHNADPNTKLEVNWKKIMSDPSPYNKQPNKDINF NGQLTINVLGRPVTVNYLDESHNKIAESKIITGYFGDNYKTEQVDVPGYTFISVDGEKVG KIGAKNVIVNYYYKKESTPTVPTTPTTPTVPTVPTVPTTPTVPTVPTTPTTPTAPTTPTA PTTPTTPTVPTTRPVQVSDSDIPNYVVAKGQAVYAVNTIGLYKKGDFSKRNRIKYYKRAV RINRPEFVVKGYKRDKSGKLRYRVQQYSPYAKRYIKGTSGYITSSVKYVIPAYYATLPAN KKIKIINPNGINSYRKRALTGEIRHFKKGQILKVKKIVKYKYTTRYQLLNDRYITANKKF VIFTKFK >gi|238617813|gb|GG669608.1| GENE 68 82175 - 82705 359 176 aa, chain - ## HITS:1 COG:no KEGG:OEOE_0060 NR:ns ## KEGG: OEOE_0060 # Name: not_defined # Def: alpha/beta fold family hydrolase # Organism: O.oeni # Pathway: not_defined # 1 161 1 160 175 253 77.0 2e-66 MNAIIFHGSAPHATANKFWYQNISNSLINHGISSIVVNLPQLDQEPLTDTLEKINKMDLE FTKDTILIGHSAGTNIIFALLEQHLETPVRAVYLIAGYSQPNGMKHTTLKESYDWTTVKN NAKEFFILNSFNDPFKCDEKQGKVLFDHLGDTLILRNDGHFMQKHQPLLLTLLNQY >gi|238617813|gb|GG669608.1| GENE 69 83321 - 84094 648 257 aa, chain - ## HITS:1 COG:lin2311 KEGG:ns NR:ns ## COG: lin2311 COG0561 # Protein_GI_number: 16801375 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 3 257 4 256 256 169 38.0 5e-42 MYKGIAFFDLDHTLLNEQTKVDPEVAEAMKQLRRNNVLPVISTGRNIFEIPEILEKTEID TVVSANGDYVLFENKPVYEAIIKPEIVTKFMDFAKSMNESTTVMNNLGAAINFVTDDTKN NYQSINTRIPPLGAEDFVKQHPIYMMVVNTVGHDQKYIDTFDDTLTFYRNTPFSMDVVVK NGSKKRGIQELISNAGLNGIPTYGFGDGNNDVPMLQYVDHPVVMGNGLPHVKEYAEFITT NNTDHGIVNGLKHYDLI >gi|238617813|gb|GG669608.1| GENE 70 84224 - 84922 345 232 aa, chain + ## HITS:1 COG:lin0018_2 KEGG:ns NR:ns ## COG: lin0018_2 COG4990 # Protein_GI_number: 16799097 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 89 232 5 164 164 60 24.0 3e-09 MEKTTIANEKTNRFFVRLRRIPGEHWYLATEGPKITTTSSKVKIPDEIKTQDFLIDQISF FNKQIWYHFTYGDLSGWLPKRNIRKTFRRLDVPAIKQETQADIDNQSAALMMLLRNAGSD ISYPDLKAAVEKWQRTNTGLIGLSDLIISETHSIRDLNKGNLRQLDKQLLRRRPIVLRVN GLNNLKSSLIVLTGFNRKLYFYNDPWTGRLESVSENHLKKHWLQGHVEAISY >gi|238617813|gb|GG669608.1| GENE 71 84940 - 85677 750 245 aa, chain + ## HITS:1 COG:BS_yclJ KEGG:ns NR:ns ## COG: BS_yclJ COG0745 # Protein_GI_number: 16077443 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 1 238 1 226 227 256 57.0 4e-68 MKLLMIEDNKSVSEMMSMFFQKEGWDVSFAYDGIEAVDMFNEDPESWDMITLDLNLPKKD GMEVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRR AHTEAQAEEPEHSEEKQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNALAQ KPRQVFSREQLLELVWGYEYYGDERTVDAHIKKLRQKIERVGPQVIQTVWGVGYKFDDSE VDKKK >gi|238617813|gb|GG669608.1| GENE 72 85674 - 87170 1043 498 aa, chain + ## HITS:1 COG:lin1543 KEGG:ns NR:ns ## COG: lin1543 COG0642 # Protein_GI_number: 16800611 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 2 482 7 479 479 323 38.0 6e-88 MKMIYQQLLAFFLVIAVTILLLGISFGRMSKSFVYNDEWRSLEKYSDSLVQQSLTVNTKS SQQVTFSLSTLKTAQALLENQSVHFTVFNQKNQVIYPNNGLSPKVTKNDWRHLTKDQIVR KVNNRNFKLSNGKTRPAMIEILKPYYYNKKLVAVVSAGVFVSDVNSNVDRINRDLLKGLG VSLIISMIISFFIASRLNRRISRLRAAATQVSNGNYDIRVKSGGNDEIGELITDFNHMTE SLEKANQEIQRQEERRQEFLADAAHEMRTPLTTISGILEGIKYDVIPQEQRGKSIDLMSN ETQRLIRLVNENLDYEKIRSNSIRLEKRHFNATKVLSSIVEQLGSKASESKDRFEIQAPD DLPIYADYDRFVQIVFNITNNAIQFTDSGTITLIGERGYNETIIRIKDTGIGMTKEQQKN IFERYYKADASRRARKYGESGLGLAIVHQLVQQHGGKISVASKPHKGTTFTVIIPDQTDA EKKAAGNNKRKSSERTDV >gi|238617813|gb|GG669608.1| GENE 73 88838 - 89314 404 158 aa, chain - ## HITS:1 COG:no KEGG:LVIS_0446 NR:ns ## KEGG: LVIS_0446 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 20 149 19 147 153 140 56.0 2e-32 MKVRKLILPFMIICLFIFALTKSANADAATWHTGTPKVIRGNWYYNGSGEQKAFITYTKT MSSGELFKQSDNNLGYYKLPGYGLKHIKYKALHHHIYLITGIQYSPKGASVQFDGQRLSY KVKAPDKKNLYFYKGFRHYTRKPNFKIVKQNQQATSNQ >gi|238617813|gb|GG669608.1| GENE 74 89727 - 90029 255 100 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227510114|ref|ZP_03940163.1| ## NR: gi|227510114|ref|ZP_03940163.1| hypothetical protein HMPREF0496_2277 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_2277 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 100 7 106 106 157 100.0 2e-37 MLSWSMLWALLPLVVGFLFRRGHLLFLIAGNNAARKPYSKESLLAGRYVGLFMYAGAILI ILVFIPNIPDGFYYVFAVLFIALLISIIIYLNKRINKMQK >gi|238617813|gb|GG669608.1| GENE 75 90196 - 90885 332 229 aa, chain - ## HITS:1 COG:SA2004 KEGG:ns NR:ns ## COG: SA2004 COG0739 # Protein_GI_number: 15927783 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Staphylococcus aureus N315 # 72 198 159 266 284 82 37.0 6e-16 MKKNAVTIEFPLRGEWVAPTTPAKRIPSHGTNRMGLKYAFDFLQVDQNNMNKFYDASTFR FLILGVPLKKCYCYGRDIYAPCDGEIVAKIDGIPERKHVHWLRESIIGIKKSLTFNEETD DFSIIAGNFIIIKCSENVYMAFVHLQTDSIAVSLNEKIPKGSFLGKVGHSGNSTSPHLHF QVMDSSDLKNANGIPCFFEKYQIYQNDTWKTVYSQIPSEKDRIRFNKNQ >gi|238617813|gb|GG669608.1| GENE 76 92343 - 92534 80 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227513045|ref|ZP_03943094.1| ## NR: gi|227513045|ref|ZP_03943094.1| hypothetical protein HMPREF0497_2167 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0497_2167 [Lactobacillus buchneri ATCC 11577] # 3 43 2 42 86 64 92.0 2e-09 MCLKKALTSKIIFFVISIRVMTLWARYGAPKSFHALTGFNKFIYVRNLRLWSWKYFILQF IWN >gi|238617813|gb|GG669608.1| GENE 77 93223 - 94599 927 458 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0485 NR:ns ## KEGG: Lbuc_0485 # Name: not_defined # Def: peptidase M10A and M12B matrixin and adamalysin # Organism: L.buchneri # Pathway: not_defined # 152 458 1 259 259 142 29.0 3e-32 MKVSKKFFPGVLLTAFAFSAGFLMNNQPNAQAKSSVKVVWRQKMTRSFYTINQSKAKNGY AYSAKLGKKVFKLSNYSHKTFTAYYHQKLKVNNQYRIYYYVKSNSGKKASGWVWRNYLKR IPSKINSSNSVIGATVSSQSQLMSYINAAPDLDPNLTILGFETDVYSKYKTTLSQQYNLA QFASSGVFKDNHAKIYVADNRLNSYVNTAIERWNAALGKNVFSIGSSSNHTLTVKLTDAS TEKWDGLFSGHIIEINSKNFTNPNYANNNLATSSTLEAKLTDISNQASSLLDLTNTLLNK LRINYQLQYLTLESKYNNSSSASTKSTIQKQISDLATNYENQDKAIRQNYDSQVSALRQA VKDAYVQEQPAISQASTTNYWTTVIMHELGHGLGLYHTPYQSDVMFASSSDEQDATPSPV KYAWTQAKDPSDAMAYTSATLTSRDVDRAKLAEILGYW >gi|238617813|gb|GG669608.1| GENE 78 95641 - 95970 178 109 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0850 NR:ns ## KEGG: Lbuc_0850 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 109 1 109 109 157 77.0 2e-37 MASNSDTIYHVLSYIKAHPAKATIRPDKYDNVVEMYLDDDVKLGNPEIYFPTQRLEVNRM APDFVSMNSDLLDYFHDKTAVKDSSYHDLWITTSHLANRNKYLIDLSFE >gi|238617813|gb|GG669608.1| GENE 79 96262 - 98007 197 581 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 318 570 268 525 563 80 28 1e-13 MKSRVSYLAVFGAVVFLLLQVSSDLYLPTVTSNVIDKGIAQNNIGYIWSEGFKMLFVSFC GVLAAGGNIFFAATQSMKMGQHIRDDMFQKITRFSQEDMDHFGAASLDTRTTNDVVQIQN VMVQILRMMLMAPLMLLGASVMSYVKSPDLTTIFIICLPLVALIVGGLMYYVVPLFKTMQ KKTDRINLIFGEALGGVRTIRSFNRDDYENQRFDAANKDFAKTGIKAFTIVSFIIPIITI IFSFINVAIVWFGADMISNRTLAVGNLVAFMTYSGQILFSFMMLSMIFVFLPRASASAAR IIEVLEVKDTITDPDTPQPLSHHEAEPSLEFDNVYFRYSSAEQQTLQNVSFKVHGGQTLA IIGGTGSGKSTLINLIPRLIEPEKGMVKVNGFEIDKLTQHDLHSLISINQQKAVLFSGTV RENMLYGKQDATDDDIWHALEVAQATEFITQDNGGLDAHVDQNGDNYSGGQKQRLAIART ILKPADIYIFDDSFSALDFETDAKLRMALRTDKQIQRAITVIVAQRISTVADADLILILD NCQVVGEGSHKQLAASNSVYQDILRSQIGEQGGINNANTTS >gi|238617813|gb|GG669608.1| GENE 80 97988 - 99829 199 613 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 384 590 16 226 245 81 27 8e-14 MRTPPVRGPVTKPHDFWHTTRRLISYTRRWIPGIVLAILMAIGGVIMDIVSPKVLGSATT VVFDGVIAGMRKVNAGMTVRSFPIDFKKIVSILMIVVFLYVLSGIFQLVQQVVMTRISQS IVYQMRKDLKAKITRLPVSFYDGHSKGDILSRAVNDMDNINTMLQSSLTQLITSFFMFFG VLFMMLTISWKLTLVALLTLPLSILVVSFFAPKSQTFFRAQQHELGVLNGQVEESYNGHN VIKTFNREEDAIKEFKEKNGRYFQASWKAQFVSSFMFPMMNLIKNLDYVFVAVIGGIQVT QGAVTLGNVQAFLQYTNMFSQPITRLANLTNTIQSTIASAERIFEIFDEPEMDFEPGHFP IVKSDKNEVTFDKVDFSYVPDQSLIQNFNLNVVPGQKIAIVGPTGAGKSTIINLLERFYE VNDGSIRMKGEDIRNKPRSEIRKRMAMVLQESWLFNGTIFDNIKYGRFSATKDEVIEAAK AAHADLFIRELPDGYDTILNEDATNISQGQRQLLTIARVFLADPEIIILDEATSSVDTRT EKLIQAAMDKLAEQRTSFVVAHRLSTIKNADKIVVMNQGQIVETGNHEQLMAKNGFYANL YNAQFIGNTLLSH >gi|238617813|gb|GG669608.1| GENE 81 99856 - 100863 626 335 aa, chain + ## HITS:1 COG:lin2030 KEGG:ns NR:ns ## COG: lin2030 COG1680 # Protein_GI_number: 16801096 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Listeria innocua # 3 332 2 328 335 187 34.0 2e-47 MKYADTIKEMHQFVDNNVVPGVTYGIIDQSAIMSDYFGDQELVPQKLSLKPQEFYDLASL TKVIGTTNLILKLLAANQLSLDDSISQYLPEWQSPQVTIRHLLTHTSDIVGYIPNRNSLP KDQLIPALLSLKSGPDLGKVVHYQDYNFIFLGWIASQILGKPVQQLISEDVLKPLEMTNA TFHPKHIEDVVPTAELPNGGLLRGTVHDPKTRILGADCGAAGLFSPLQDLLHFSRWLLGQ ISYPDFLPNEWLDQLFVDQTPGHLKNRSFGWILRSYQNHPYILHTGYTGTLVVIDRISQQ ALVFLTNRVHPDASNKQFLPYRSNLIRTFIREANQ >gi|238617813|gb|GG669608.1| GENE 82 100966 - 101670 649 234 aa, chain - ## HITS:1 COG:SPy1034 KEGG:ns NR:ns ## COG: SPy1034 COG3442 # Protein_GI_number: 15675031 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 3 220 16 233 263 250 56.0 1e-66 MAYSLNVCHLYGDLMNTYGDLGNILVLKYLANKMGVQLTSEVISLDQKFDADKFDIVVFG GGQDFEQSIISKDIQSKKKDLTDFIEDGGSVVAICGGYQLLGHYYIGANGEKLMGIGALD HYTDKQKDHRFIGNVVIENEETGEKYHGFENHQGITFLGKSERPLGKVLEGHGNNGQDKT EGAIYKNVYCTYFHGPILARNNDIAKHVLINALKRKYPDANLGQAEQVKVGSTF >gi|238617813|gb|GG669608.1| GENE 83 101670 - 103016 935 448 aa, chain - ## HITS:1 COG:L114717 KEGG:ns NR:ns ## COG: L114717 COG0769 # Protein_GI_number: 15673088 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 1 438 1 439 449 484 52.0 1e-136 MSLKSSIATAAGKSSYWFLHTFLKGGSSLPGKITKKLDPDILATLGRNYDVIVITGTNGK TLTTALTVQVLKEKYENILTNPTGSNMEQGIITTFLHASRPKGKRPLAILEVDEANVIKV TQYIKPKAFVFTNIFRDQMDRYGEIYTTYQKILNGVALAPNATIIANGDAPIFHSKQLPN PIIYYGFDNQEQGDIKATPNTDGVLCPQCQHILHYRFISYSNLGKYFCPNCGYQRPKLNF ALNKITELTPKSSSFEIDGEPIKIDIGGVYNIYNALAAYTVGRFMGVSPAQAKQAFEKDK RIFGRQEEINVDGKLVTLILVKNPVGLNQVIDMISTDKDPFTFIGLLNANYADGIDTSWI WDGDFERLPKMNIKQYITGGQRYKDITYRLQVAGVDPSKHLVEPDLDKVVEMIPNAPTRK VYILATYTAMLSLRKTFATKGFIEGGMG >gi|238617813|gb|GG669608.1| GENE 84 103109 - 103768 306 219 aa, chain + ## HITS:1 COG:lin2688 KEGG:ns NR:ns ## COG: lin2688 COG1435 # Protein_GI_number: 16801749 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Listeria innocua # 30 219 1 191 191 285 69.0 4e-77 MWSIFKVHIDIRSNFCIIEKKLSRKKVEKLAQLFYRYGTMNSGKTIEIIKVAHNYEEQNK SVIIMTSALDTREKQGMIESRIGLERKAIPIYDETNVFKKVFEIDPHASCVLVDEAQFLK KKHVFELAQIVDELHIPVIAFGLKNDFQNHLFEGSEYLLLYADKIEEMKTICWFCGKKAT MNLRLHNGKPVYEGEQIKMGGNESYYPVCRRHYYNPPIK >gi|238617813|gb|GG669608.1| GENE 85 103787 - 104860 1129 357 aa, chain + ## HITS:1 COG:SPy1141 KEGG:ns NR:ns ## COG: SPy1141 COG0216 # Protein_GI_number: 15675118 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Streptococcus pyogenes M1 GAS # 4 357 3 356 359 429 64.0 1e-120 MDEIFDKLQAVVDRYDELNELISDPEVIADTQRFMKLSKEEGELRDTVAAYNKYKEVSKQ LDDDEEMLREKIDDADLESMVKDEISDFKDQKAKLEDQLKVMLLPKDPNDEKNIIMEIHG AAGGDEGSLFAADLFSMYSKYAERQGWKVEVIDKSETEVGGFKEIVLMITGDKVYSKLKY ENGAHRVQRVPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHIN KTSSAVRMTHLPTGIVVAMQDERSQQQNRAKAMKILKARVYDYYAQQEQDQYNAERKSAI GTGDRSERIRTYNYPQNRVTDHRIGLTLNKLDKIMNGELDDIVDALILSDQAKKLEN >gi|238617813|gb|GG669608.1| GENE 86 104865 - 105731 434 288 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 30 285 39 290 294 171 40 4e-41 MNSPEKPTYFEARRWASFRIQNFSQIDMYDIDFLIQKRFGFSTTDMLIHYHDRMSSGQWL QFQNDVKRLISGEPVQYIVGQADFYGLTLNVDSNVLIPRVETEELVDWILDQTTVYTNRP LKVLDIGTGSGAIAIALKANRPEWQVNASDISDSALKVAQQNAQLHHVAINFILSDIFAH INEAFDLIVSNPPYISASEVGDMDSSVKNNEPKIALFAADDGLAIYKSLAKGVDAHLNAG GQLFVEIGFHQEASVRKIFQEALPNAIVTAKHDVSGHQRMVQLRKNGE >gi|238617813|gb|GG669608.1| GENE 87 105737 - 106759 720 340 aa, chain + ## HITS:1 COG:lin2685 KEGG:ns NR:ns ## COG: lin2685 COG0009 # Protein_GI_number: 16801746 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Listeria innocua # 12 333 19 339 345 263 45.0 4e-70 MKTLILKKDQIEQAANFIKEGELVSFPTETVYGLGADATNETAVKKVYAAKGRPSDNPLI VTVSSVEMVTKYVDHISDDAQKLIKAFWPGSLTMIFKLKPNVLSKAVTGGLNTAAFRFPQ NQLTLDLITKAGVPIVGPSANTSGKPSPTTAQHVYHDLNGKIAAILDDGPTTVGVESTVL DMSVKTPSILRPGAVTKDDIEAVIHQNVIDELHHVGTDQTPKAPGMKYKHYAPNAQVYIV DPEDSWLDVAKWIESHPQPVGVMAFDNVISSIDWPMNAQIVTLGSNSRTASRDLFADLRE FDNHPEIKIIFTQGLKPSGIAEAYMNRLNKSAGQMHFKQL >gi|238617813|gb|GG669608.1| GENE 88 106799 - 108037 1138 412 aa, chain + ## HITS:1 COG:L0082 KEGG:ns NR:ns ## COG: L0082 COG0112 # Protein_GI_number: 15672583 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Lactococcus lactis # 4 411 7 415 415 520 64.0 1e-147 MNYDYKQQDPELWDAIANEENRQEHNIELIASENIVSNAVRAAQGSVLTNKYAEGYPGRR YYGGCEFIDVVEQLAIDRAKELFGAEYANVQPHSGSQANQAVYAALLKPGDKILGMGLDA GGHLSHGAKVSFSGKLYDSYSYGLDPKTQLIDYDQVAKIAEDVQPKLIIAGASAYSRIID WDKFREIADSVGAYLMVDMAHIAGLVAAGLHPNPVPVADVVTTTTHKTLRGPRGGLILAK QKYAKKLNSAVFPGSQGGPLEHVIAGKAAAFYEDLQPSFKDYAARIIKNAQAMAAVFEAS DNVSVLTGGTDNHLMTLNLTECELNGKDLQNILDSVHITTNKESIPNDPLPPSKTSGLRL GTPAITTRGFDEDDARQVATLILQVIEDPENDANLKDVAAKVEQLTEKHPLD >gi|238617813|gb|GG669608.1| GENE 89 108242 - 108871 711 209 aa, chain + ## HITS:1 COG:SPy0392 KEGG:ns NR:ns ## COG: SPy0392 COG0035 # Protein_GI_number: 15674535 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 209 1 209 209 328 76.0 5e-90 MGKFQVMDHPLIQHKLTIIRDKNCGTKEFREIVNEIANLMAFEVTRDMPLEDVDVQTPEG IAHAKQISGKKVAIVPILRAGIGMVDGILDLIPAAKVGHIGMYRDEKTLEPHEYFVKLPS DIDQRQIFVVDPMLATGGSSIMAIDALKKRGASNIKFVCLVAAPEGVKALQEAHPDVDIY TAALDQKLNDKGYIVPGLGDAGDRLFGTK >gi|238617813|gb|GG669608.1| GENE 90 109263 - 109985 483 240 aa, chain + ## HITS:1 COG:lin2679 KEGG:ns NR:ns ## COG: lin2679 COG0356 # Protein_GI_number: 16801740 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Listeria innocua # 9 238 7 237 238 160 40.0 3e-39 MSIGGSNHTFTFLGLTFNAGNMISILLACLIVLALVYALSRHITMKPGKAQNILEYAVDF TNGIVGGSVSGEASKMLGLWGFSLFLFLLVANNMGLFLHIDVSGITYVKSPTSDPVVTMT LSLMTLTLAQFLGIRTLGYKKHFENYLKPFKIFIVVNLFEEFTNFLTLGLRLFGNILSGE MLLTMITGMATGGGPVMWIGMLPLELIWQGFSVFISCIQAYVFVTLSSVYISQKIEVEEV >gi|238617813|gb|GG669608.1| GENE 91 110015 - 110227 425 70 aa, chain + ## HITS:1 COG:no KEGG:LPST_C1969 NR:ns ## KEGG: LPST_C1969 # Name: atpE # Def: F0F1 ATP synthase subunit C # Organism: L.plantarum_plantarum # Pathway: Oxidative phosphorylation [PATH:lps00190]; Metabolic pathways [PATH:lps01100] # 1 70 1 70 70 75 81.0 7e-13 MGAIAAGIAMAGAAIGGAIGDGILIAKMLEGMARQPELSGQLRGNMFIGVGLVEAMPIIA FVVALLVMNK >gi|238617813|gb|GG669608.1| GENE 92 110271 - 110780 651 169 aa, chain + ## HITS:1 COG:lin2677 KEGG:ns NR:ns ## COG: lin2677 COG0711 # Protein_GI_number: 16801738 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Listeria innocua # 6 169 7 170 170 111 37.0 8e-25 MFSYSVVGAQLYTGDMIFVMISFLILMYLIKLIAWNPITKMMQNRSDKIANDIDSAKNSR DKAAELAQQRQAQLDKTREDANNLINTAKENGQRQREQIVEDARNEASNLKSSAEKDIEQ QRQEALANSRKDVASLSIEIATKIISKELNEQDQKGLVDSYIEGLGKQK >gi|238617813|gb|GG669608.1| GENE 93 110777 - 111319 521 180 aa, chain + ## HITS:1 COG:BH3757 KEGG:ns NR:ns ## COG: BH3757 COG0712 # Protein_GI_number: 15616319 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Bacillus halodurans # 4 180 2 179 183 85 34.0 4e-17 MKSTNITAAKKYAKAMFEVLTDAKGLEDGYADLIELRKIFVANPKLIDILDDMRVSDDQK TSLLAPITKNASDFINNFLKVVASYRRFPDIITIIDQFQQLYEDDKKIVRAEVVSATELD SDQQERLAKAFEKRVGAAKVIFDTKVDKSLIGGIVIKSSDVIIDGSVKTRINKVKELLLN >gi|238617813|gb|GG669608.1| GENE 94 111347 - 112915 1442 522 aa, chain + ## HITS:1 COG:lin2675 KEGG:ns NR:ns ## COG: lin2675 COG0056 # Protein_GI_number: 16801736 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Listeria innocua # 1 503 1 503 504 728 71.0 0 MSIKAEEISALIKQQLQGYQNELDVKETGIVTYVGDGIARAHGLENALSGELLDFGHGVF GMVQNLEANDVGIMVLGDDTNIREGDSVKRTGRIMEVPVGDDMIGRVVNSLGQPIDGKGP IKADDHKAIEHKAPGVMDRKSVFEPLQTGIKSIDSLIPIGRGQRELIIGDRKTGKTSIAI DTILNQKDQNMKCIYVAIGQKESTVRASVSTLEKFGAMDYTTVISAGPSEPASLLYIAPY AGATMGEYFMHKGQHVLIIYDDLSKQANAYRELSLILRRPPGREAYPGDIFYTHSRLLER AAKLSDKLGGGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLDADSFYSGVRPAVDAG TSVSRVGGDAQVKAMKKVAGTLRLDLASYHELESFAQFGSDLDEATQAKLNRGARTVEVL KQPLHSPIPVEKQVLILYCLTHGFLDKIEIDDILRYQNEIFDFFDRSHKDLLDSIAKTGN LPDTSKMDAAIKEFDQTFQPSKQDEGQTTASNDDQKSTATND >gi|238617813|gb|GG669608.1| GENE 95 112938 - 113858 826 306 aa, chain + ## HITS:1 COG:L8105 KEGG:ns NR:ns ## COG: L8105 COG0224 # Protein_GI_number: 15673747 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Lactococcus lactis # 1 301 1 289 289 253 49.0 4e-67 MPASLNDVKHRITSTKKTRQITNAMEMVSQAKLNQIQKHTSSYAEYASQVKSVVMHLAQS HILDGLKSSGHSADNDQSKAKRTAYLVITSDRGMVGSYNANVIRDSNEFISKHSGVSGDY TIIAVGGNGSDFYKKRGQNVSYEYRGVSDVPTFNEVRQIVKMITSMYDKGEFDELYVCYE HFVNRLVSRFRAEKMLPVDSEAIQGEASQEIQTKELTAEYDVEPSEKEVLNVVLPQYSES LVYGAILDAKTSEHASSATAMKSASDNADDLISSLELQYNRARQAAITTEITEITGGQEA LKSDNN >gi|238617813|gb|GG669608.1| GENE 96 113877 - 115322 1354 481 aa, chain + ## HITS:1 COG:SPy0760 KEGG:ns NR:ns ## COG: SPy0760 COG0055 # Protein_GI_number: 15674808 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 464 1 466 468 721 79.0 0 MSTGKVLQVIGPVVDVEFSLDDKLPEINTALNVHVSDDKTLVVEVALDLGDGVVRTIAMD GTDGLRRGMEVENTESSISVPVGNDTLGRVFNVLGEPIDGGPEFGPDAERWPIHREAPKY DELNPSTEILETGIKVIDLLEPYIRGGKVGLFGGAGVGKTVLIQELIHNIAQGHNGISVF TGVGERTREGNDMYYEMKGSGVLAKTAMVYGQMNEPPGARMRVALTGLTIAEYFRDEAGQ DVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGQLQERITSTKKGAITSIQA VYVPADDYTDPAPATTFAHLDATTNLERSLTQQGIYPAVDPLASTSSALDPQIVGQEHYD VATEVQHVLQRYRELQDIISILGMDELSDEEKTIVNRARRIQFFLSQSFSVAEQFTGLPG KYVSVTDTVKGFKDILDGKYDDIPEDAFRNCGPIEDVIANAKKLQGNSTADTSDEKQSAA N >gi|238617813|gb|GG669608.1| GENE 97 115336 - 115755 346 139 aa, chain + ## HITS:1 COG:SPy0761 KEGG:ns NR:ns ## COG: SPy0761 COG0355 # Protein_GI_number: 15674809 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Streptococcus pyogenes M1 GAS # 7 139 4 138 138 110 50.0 6e-25 MADSSVINISIVTPDGKVYEHSAADMIVVSTQSGQLGIMANHVPIIATLDVDETRVKYGN EEDEIAVNGGFIEFSNNMATIVADSAENQSDIDVARAESARQRAQRLITEARQKNDEAAL DRAQVALRRAVNRINVAKK >gi|238617813|gb|GG669608.1| GENE 98 116042 - 116272 125 76 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0868 NR:ns ## KEGG: Lbuc_0868 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 76 1 76 76 89 80.0 4e-17 MKMIGIQAIVTLVTYFLFIAMAFRSVQEIHIERYLPLRALPGKLLIVLLSIAIGYACAQF FLSVITNIQNLIYLIK >gi|238617813|gb|GG669608.1| GENE 99 116289 - 117608 1148 439 aa, chain + ## HITS:1 COG:BH3749 KEGG:ns NR:ns ## COG: BH3749 COG0766 # Protein_GI_number: 15616311 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Bacillus halodurans # 1 419 1 417 440 528 65.0 1e-150 MEKIIVHGGNPLKGRVHIDGAKNAVLPIQAATILASEGQTSISNVPLLSDVYTMNNVLRF LNVKVDFDELHNEITFDASSEISSEAPFEYVSKMRASIVVMGPLLARLGRAKVALPGGCA IGSRPIDLHLKGFEALGATIEQHDGYVEATAPNGLVGTDIYLDFPSVGATQNIMMAATLA TGKTVIQNAAREPEIVDLANVLNKMGAKVVGAGTEQIRIQGVSELHGTDHSVVQDRIEAG TFMIAAAVTRGDVLIEDAIAEHNKPLILKMREMGVSVTESDAGIRVIGPDHLKPVDVKTL PHPGFPTDMQPQMTILQLAADGNSSMTETVFENRFMHMEELRRMNAKYTISGRTVIMNGP TDFNGAEVAATDLRAAAALVIAGLVAKGYTQVSNLQYLDRGYYDFHKKLASLGAEIKRVN VEDDSIIVNQSSSVKHLNK >gi|238617813|gb|GG669608.1| GENE 100 117804 - 118805 1110 333 aa, chain + ## HITS:1 COG:BH3739 KEGG:ns NR:ns ## COG: BH3739 COG1077 # Protein_GI_number: 15616301 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Bacillus halodurans # 2 322 3 322 334 394 61.0 1e-109 MAKDIGIDLGTANVLIYVAGKGIVLNEPSVVAIDTRTGKALAVGTEAYRMVGRTPSNIRA IRPLKDGVISDFDITEEMLTYFINKLDVKGFMSKPKIMICAPTNVTEIERNAIVQAAEKA GGGQVYLEEEPKVAAVGAGMDIFQPRGNMVIDMGGGTSDIAVISLGDIVASKSIRIAGDK MNTEIVTYIKQKHGLIIGEHTAEKIKIEIGTAKKDDKDVKKLEVRGRDAVSGMPRAITID SNEVADAIADTVQLIVDGAKEVLEIIPPELASDIVDRGIMLTGGGALLRNIDQVIADALT VPVIISENPLDNVAKGAGVLLEQYIKNPKLKTK >gi|238617813|gb|GG669608.1| GENE 101 118841 - 119101 190 86 aa, chain + ## HITS:1 COG:SPy0370 KEGG:ns NR:ns ## COG: SPy0370 COG0759 # Protein_GI_number: 15674519 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 1 82 6 86 86 106 59.0 1e-23 MLMVRGYQRFISPLFPPTCRYYPTCSHYMLIALKKHGALKGAVMGIARILRCHPFVRGGY DPVPDHFTIFRNKSARDQYRKSMHLK >gi|238617813|gb|GG669608.1| GENE 102 119121 - 119345 213 74 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0872 NR:ns ## KEGG: Lbuc_0872 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 74 1 74 74 90 71.0 1e-17 MSKAIKSINVEIKDSKDQNGNQVSDLMIGRKRIGSITKVNDDKFQAVNTHQESYHVKTFD EGVQLLIKDFHLHH >gi|238617813|gb|GG669608.1| GENE 103 119376 - 120578 820 400 aa, chain + ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 1 398 1 398 414 350 47.0 3e-96 MDTKRGTDKEKESRIDWGIIFCVLMLALIGLASIYVAATHDSSATSVLRQVVSQLVWYVI GIVAVIIIMQFDSEQLWKVAPIAYWLGILLLASVLVLYSRTYYVNTGAKSWFSLAGLTFQ PSEVMKPAYILMLGRVIVEHNDRHPLKTAKSDWLLIGKMILWTVPIAVLLKLQNDFGTML VFFAILGGMIIVSGITWKIILPSVITIFGIAGTALALVIPEAGRKILEKIGFQAYQFNRV DTWLHPSADTSNQGYQLWQSMKAIGSGGIFGTGFNQSHVYVPVRESDMIFSVIGENFGFI GSCVLIFLYFLLIYQMIKVTFETRNVFYAYISTGVIMMILFHVFENVGMSIGLLPLTGIP LPFVSAGGSALIGNMIGIGLIMSMQYHNKSYMFGEDKEFS >gi|238617813|gb|GG669608.1| GENE 104 120594 - 120887 375 97 aa, chain + ## HITS:1 COG:BMEII0560 KEGG:ns NR:ns ## COG: BMEII0560 COG0509 # Protein_GI_number: 17988905 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Brucella melitensis # 7 96 15 104 125 79 40.0 2e-15 MDTKYYWTDEDNGVVTVGLTADGQNELGNITFASLPKVGASLTTKDTLLNVEADKAVSDI PSPVAGKVIAINDKAANDPSVLNKKDKADSWIAKIQK >gi|238617813|gb|GG669608.1| GENE 105 121258 - 122292 864 344 aa, chain + ## HITS:1 COG:lin2514 KEGG:ns NR:ns ## COG: lin2514 COG1135 # Protein_GI_number: 16801576 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Listeria innocua # 1 341 1 338 340 370 55.0 1e-102 MIRFKDVSKDYSTKDGELTAVSDVNIEINDGEIFGIVGYSGAGKSTLVRMLDGLEAPTKG EIDINGTNIAKLYGHRLRVQRQKIGMIFQHFNLLWSRTVIDNIALPLEIAKVPKKKRQAR AEELVKLVGLEGREHSYPSELSGGQKQRVGIARALANEPTILISDEATSALDPDTTNEVL DLLLKINKEMNLTILLITHEMHAIAKICERVAVMDSGRVVESGSVFDVFRHPKEEVTKKF VSEEFSPQQEESTITLDELIKKYPDGQIIRLVFHGPQAELPIVSEVVKRYSELQISILAG AIRQTQEGALGSLDLQFIGDEKQITDALDYLKKMRVETEVIHHE >gi|238617813|gb|GG669608.1| GENE 106 122285 - 122980 636 231 aa, chain + ## HITS:1 COG:BH3480 KEGG:ns NR:ns ## COG: BH3480 COG2011 # Protein_GI_number: 15616042 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Bacillus halodurans # 12 229 1 218 218 217 55.0 1e-56 MSNATGLKSYFIFKNVDWPSMWSATWETVWMTLISMIAVVVFGIILGLILYETRTHNGPL FKVLNWIVGLFVDIFRSIPFIILIVLLLPVTKEMIGTIIGPRAALPSLVISASPFYARMV ESYFREVDSGVIEAAESMGATTWGIITKVLLPESKPALIAGATVTTISLISYTAMAGAIG AGGLGNLAYLDGFQSSNNTVTLVATVIICLFVFLVQYIGDLLVKVTDKRTL >gi|238617813|gb|GG669608.1| GENE 107 123003 - 123830 795 275 aa, chain + ## HITS:1 COG:lin2512 KEGG:ns NR:ns ## COG: lin2512 COG1464 # Protein_GI_number: 16801574 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Listeria innocua # 3 271 2 274 276 247 47.0 1e-65 MKKKLLGLFAVVFTAFLLVGCSSSSTSKKTTTLKIGASNVPHAQILRHVAPQLKKEGVNL KITVFQDYVMPNKALADKELDANYFQHIPFLKQWNKENHGTLVDAGGVHIEPIAVFSKKV KNLKDLKKGATVLVSNNTPDYGRILQLFKNAGLITLKKGVNIESATFDDIASNPRHLKFK HSYEPKLMPQIYKNGEGDAVVINANYAVQAGLDPRKQSIAIEGRDTPYVNIIATRKGDQN KPAIKKLVKALQSTSTQKWIYNKYKGAVLPVKNVK >gi|238617813|gb|GG669608.1| GENE 108 123912 - 124781 666 289 aa, chain + ## HITS:1 COG:Cgl2775 KEGG:ns NR:ns ## COG: Cgl2775 COG0330 # Protein_GI_number: 19554025 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Corynebacterium glutamicum # 38 288 78 323 325 206 43.0 5e-53 MKEKNVFHVNGYIGLVVALVLLAFGGYLLWIGSQDTSVSSIVFGTLIIILDLLFASSLTI IQPNEAKVLTFFGNYIGTIRTPGLFMTVPLTSKQTISLRVRNFNSQIIKVNDSKGNPVEI AAVIVYKVVDSAKAIFNVEDYEQFVEIQSESAIRHIASQYPYDSFDEEKDILTLRGNSTE VSEALKGELQERLEVAGLTIMETRLTHLAYATEIASAMLQRQQATAILSARKIIVQGAVE ISQEAVKQLQKNISIDIPDEKKIQMINNVLVSIITERGTQNVINTDNVS >gi|238617813|gb|GG669608.1| GENE 109 124921 - 125673 293 250 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 5 223 1 217 245 117 31 1e-24 MTREIVKTQNLHKVYDQNSERPYEALKGISFTVDEGDFVGIMGASGSGKTTLLNILATLD KPTSGSVQIDGNDITQLTSNEMSDFRSQKLGFIFQDFNLLETLTVFENIALPLSLQNIKG RLTNQKVRESAAKLGIEELLAKYPTQLSGGQKQRVAAARALVSNPSIIFGDEPTGALDST NARELLDTLKNINRQGVSVLLVTHDPFSASFCKRILFIKDGKIGDEIQAGNRDRTQFYQE ILEKLGTFEQ >gi|238617813|gb|GG669608.1| GENE 110 125688 - 127511 1267 607 aa, chain + ## HITS:1 COG:lin2220 KEGG:ns NR:ns ## COG: lin2220 COG0577 # Protein_GI_number: 16801285 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Listeria innocua # 2 602 3 645 646 135 23.0 3e-31 MLLKISLSGVKSRWKDYCVLFSGIIMASAIFYMFEAIALNKKFVSSTTVGQNARAVFILG SVLLIVITLVYVFYANNFLMSMRKHDYGLFMMLGAKRSKISKLISFETLIVGAASTLLGI VAGIGLTKIVSSFLITSLEIPIKYFQAIYVPAIWTTLILFMILFAIAGMINAGVFSRTAA LKLLKSENQTDWKQPKAKRLVVQAILGVLLLSGGYYAMYDIRQLQVGSIWIGLITIVAGT YLIFNSFFVMLLERIQQSSLNSKGINNFTIAQLKFRIRDYTKILSVVSLLFALALGAITV GIGFQSDIPEIANGNNAYAISATNPSAKMSSLIAKVEGKTTSHYQQKVTDKVVYYRSSDF NKSPLKYSAFVLKGNQAGLSQIKTSTLKQLKDPQSPAYQQLSSLQDPSLKSRRIRFISDT TFDQLRGRTNELQLIRVKDINSQYRSLKSVMDLQKTEFGSQTVQLMGESIVLYSMLKSMF SSMEFMGVFLGIAFLAMLASCLMFKILSGAQSDKVRFEMLNKIGTRKKVLQHSIMLQILG LFGLPAVLGLLDVAFGLQMFVKANLLYHAYRTFAYSSIGFLVLYLIYYGVTVLIYQKIVI PKTRSEK >gi|238617813|gb|GG669608.1| GENE 111 127520 - 127906 307 128 aa, chain + ## HITS:1 COG:BH3492 KEGG:ns NR:ns ## COG: BH3492 COG1725 # Protein_GI_number: 15616054 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 7 125 1 119 129 111 41.0 3e-25 MVAWYSMQFQFNSSEPIYRQVAEQIEDAIAAGGFEEGQQIPSTTEISKEFHINPATVLKG MNIVVAKNLIEKRRGLGMFVTDGAHQRIVSEKKNLFFENFVVSLVKEARSLDISESELLE LIKRGYDK >gi|238617813|gb|GG669608.1| GENE 112 127903 - 128781 633 292 aa, chain + ## HITS:1 COG:BH3493 KEGG:ns NR:ns ## COG: BH3493 COG1131 # Protein_GI_number: 15616055 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus halodurans # 2 281 3 282 283 160 30.0 2e-39 MSVLEVSHVSKSFGSKNVLQDVSLTFEENKIYGLLGRNGAGKSTLLNIMTNRIFADTGEV KIDSERINDNDAKLGLIFLMSEVNLYPNGNTLNQIVADTELIYGSFNHQLAERLAKEFDL DLTSKFGKLSTGYNSIFKLILALCVPVKFVLLDEPVLGLDANHREMFYSELIQTYTDNPR TFIISTHLIEEVANLISDVIVLDEGRIMLDQPVEDVLAKTHSVVGPQKDVDAYTKGLNVI GHDNMGTIRVNYVYGDLDDRRLPDTVQLSNFDLQKLFIFLTNQFEGSRHYEN >gi|238617813|gb|GG669608.1| GENE 113 128771 - 129541 503 256 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0883 NR:ns ## KEGG: Lbuc_0883 # Name: not_defined # Def: ABC transporter permease # Organism: L.buchneri # Pathway: not_defined # 1 256 1 257 257 236 56.0 5e-61 MKTSQITKYLFKRQIVILGEMYLVTFAAIYILPLLLSLITGTLHDYSFVRILKTSPITGF FSFFMFVIATLSYENFKFLIQNGISRKTFFEAQITVYGLFILIGNTVNLVYNYLIYTPMT NRDTFNIFMTAYAKFFSNGIITVIFNFIFSALTLVIMTLIGMTIGSFLSLFSKTWQRILL VATPIIGGVTMIYIINALETSSLKMTWVEHFAELILGYHRSGIYNPFPMMAFMLLISVIM LAIVRYLFSKKQLKRE >gi|238617813|gb|GG669608.1| GENE 114 129744 - 130871 1011 375 aa, chain + ## HITS:1 COG:ECs0431 KEGG:ns NR:ns ## COG: ECs0431 COG1181 # Protein_GI_number: 15829685 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Escherichia coli O157:H7 # 5 354 2 354 364 286 43.0 5e-77 MENNKKLHVGLIFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFLMTKNGYFLGTKASTR VFNGEPEDDVARQEIAKLDKSNPLAPILNLSEDSNIDVFFPIIHGNLGEDGTIQGLLRLL NKPYVGSGVLGSAMSFDKDITKKILKLAGVATTRYELLTPLTVEKYSYDSLSAELGKILF VKPANQGSSVGIHKVETSDDYDEAIRDAFRYDNKVLVEEAIEGPEELEISVLGNHHPIAS KVGSIKVPADDAFYTYDNKFVDASQVKFDVPVDIPEALSKELTKMALDSYRALGLKGMAR IDFLVSQDSEPYVSEVNTLPGFTNISLYPQLFAASGISYRELIDRLIQLANEEYERQSKI LYDFKPLPPRDQDVK >gi|238617813|gb|GG669608.1| GENE 115 130971 - 132488 562 505 aa, chain + ## HITS:1 COG:L58914_2 KEGG:ns NR:ns ## COG: L58914_2 COG0584 # Protein_GI_number: 15673979 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 269 492 1 232 249 122 32.0 1e-27 MVERQFQKLNFYLLGFAIVMALLKFWMMVTVDSKIVVICAFLSLLLLGSTINVGIGNLVP NHVKKKICFRIDFWLAVLTLWFTMLPFGLFGLSAFFKTSFPLTGYQFTWITINRYWLLGC LITAYVVLLMVVLYLRRFIYYLATSYNKSFLQILTLSRHTASLKDVGRSLLLIAIRIGWV MCLILFLSFINYLVGQQFVFVLSLGIINLCVPLIEIKLLFRLLAIPVNSHIKLTGISVFG LFGALIFVSVLGVTYSSHRILKPAQQEIIVHRGVIDNDGAPNTISALKKNSRYRFSYVEM DIQETKDHHFICAHNDTLFIPGKGQREINLLKLKTIQRYHHVDLFREYLHIANNLEQPLI VELKVTNHSDKEMGKRFAEQFGQQMLKQSNMVHSVGYNYLRQIKARYPKIRVGLVTMLNF SNLAKYKVDFYTLQHITLTPFLLRSIPSKRPVYAWTDDQSLTMKRLSMMGVDGQVTDQAI TLKDLTFNQKQNYWLLILNSIVTYL >gi|238617813|gb|GG669608.1| GENE 116 132522 - 133064 225 180 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 4 177 3 179 185 91 29 7e-17 MTTRCSWATKSPELMIYHDTRWGKPTREVQDLFHAMCLEIMQAGLAFQVVLKHEEGMREV LQDFSINYMAHLSKSDIENLCQDTRMIRNRAKIEALIENAKVVSNDPGKLVDLTWAPVHY VQLDHMLTEPAKPADYQEFIRPFVAAFKTWGLKRMGPVTTYSYLQAVGVVNDHALTCCFR >gi|238617813|gb|GG669608.1| GENE 117 133181 - 134104 583 307 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0887 NR:ns ## KEGG: Lbuc_0887 # Name: not_defined # Def: helix-turn-helix domain-containing protein # Organism: L.buchneri # Pathway: not_defined # 1 306 1 302 303 348 55.0 1e-94 MATKITGSAIRKARKEKGLSQKQLADGICTQATISLIENRNVCPNINILNQICQRLAINM TDVSFNPRYGEKLFSYIESDMRRHCYLQARERMGRVSFDKLESKLAEGKYYCYQGFAELY IDDDIEEAIYHFNWMLTKYPYENLSFYQAWSNLGLGLAYQKLGKTARAPKFIEESIRILE KIQSHKNRYTNDDICAVTDLYIDIIATYVELEKFDRALKLCAVVLKRLTSTNSIYKIDVV EELASRCLYANGQIVEATMRQFTAMFIADLRGNHQLFEKIMTKNQKHLIELVKKELSKND GHETLIV >gi|238617813|gb|GG669608.1| GENE 118 134222 - 134704 458 160 aa, chain - ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 147 1 147 152 161 55.0 6e-40 MIQQYNQILVPVDGSYEAELAFKKGVAVAIRNHASLHLLHVVDTRAFQNISSFDTSMVEQ VTDTAKQTLDKYIDEAKKAGLNDVDYSIEYGAPKTVIARDIPRNLNIDLIMIGATGLNAV ERLLIGSVTEYVTRTAVCDVLVVRTDLDNKPAKNPSKRVG >gi|238617813|gb|GG669608.1| GENE 119 134787 - 135074 270 95 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0889 NR:ns ## KEGG: Lbuc_0889 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 95 1 95 97 90 63.0 2e-17 MIINILVGIAVIIAFFIGYYLLSHLNKTLFEINVQKNPRLSGAARTGGITFILLGVLGIL SMIIQNDIFILIVLLATTFAGTILEMVIMNIINHR >gi|238617813|gb|GG669608.1| GENE 120 135096 - 136370 1048 424 aa, chain - ## HITS:1 COG:BS_yrvN KEGG:ns NR:ns ## COG: BS_yrvN COG2256 # Protein_GI_number: 16079807 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Bacillus subtilis # 3 418 2 417 421 556 66.0 1e-158 MQQPLAYRMRPTKIEEIVGQQDLVGPGKIISRMVKAKMLSSMILYGPPGTGKTSIASAIA GSTKYAFRVLNAATDTKKDLQVVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPLLEKGAI ILIGATTENPYININPAIRSRTQIFEVHPLSPKDIKQAVLRALKDVKNGLGQFHVNLSDP AMEFLTTTTNGDLRSALNGLELAVKSTPENDDKMIDIDLSVIEECLQRKSLSADKNGDAH YDVISAFQKSIRGSDVDAALHYASRLIESGDLVSLIRRLIVIAYEDVGLANPAACERTVS AVEAAKQLGLPEGRIPLANVIIELCLSPKSNSAMSAIDQALNDVKTGNYGEIPLRLKDAH YKGAKKLGRGVEYEYPHDFPNDWVKQQYLPDKIKNAQYYHPKNNGKIETALKEQYLRLRQ SFGR >gi|238617813|gb|GG669608.1| GENE 121 136458 - 137153 1174 231 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227510162|ref|ZP_03940211.1| 30S ribosomal protein S4 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 231 1 231 231 456 99 1e-127 MSERAKQHARILNLQWLILLQKIIGGFFMSRYTGPSWRISRRLGISLSGTGKELSRRPYA PGDHGQGRRQKLSEYGLQLKEKQKLRYMYGLTERQFSNLFVRAGKIREGKHGVNFMILLE RRLDNIVYRLGLATTRRQARQLVNHGHITVDGKRVDIPSYEVKPGQVVSVREKSKDLQVV KDAVEAVVGRPQYVSFDADKLEGSLVRLPQREELDADIDESLIVEYYNKLG >gi|238617813|gb|GG669608.1| GENE 122 137268 - 137741 304 157 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 [Streptococcus pneumoniae R6] # 3 154 3 152 165 121 41 5e-26 MRKNFMQNVTELVNQQLDALLYEETDLVSNMANASALLNQSLDQINWVGFYRYIPENDEL ILGPFQGKVACMHIKNGVGVCGTALTQKHSLRVADVHQFAGHIACDGDSKSEIVIPIFKD GQPLGVLDIDSPVLERFSAKDEALLNDFVNIFIKHVD >gi|238617813|gb|GG669608.1| GENE 123 137983 - 139641 1140 552 aa, chain + ## HITS:1 COG:L7722 KEGG:ns NR:ns ## COG: L7722 COG4477 # Protein_GI_number: 15674133 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Lactococcus lactis # 7 534 39 567 576 226 28.0 6e-59 MATSVYESKKDLNKIPLDDEFALAKKMNLTGESKKKYGQLHNKYQHYRNQILPSIDELIK TVKEDGKGINFIKTRNDWRTANQTIQDADAALKEIQAGLAQLYDLNKQHQLAVSELEKKY KQLREDILNQNASFGPSIDGLEKMLANIEGTFDEFTKLTQSGDPSSADEVLTDLNTATGK LEDYMKRIPKLFLSLDKEFNEQLDEIQTGYTELRSKGYNFPNDNFETSVNNIRDQIRHNL DSLAKLKVEDVSAVNAKIEDAIDQLYSAIDKELKARPSVEKNTSIIGEYVDHVRRQNEDL TKRLQVLNESYVLNHQEIEDNHQFDRQITGLEREFDRETKSIDEGKAVYSEINHTQQKML SSLKELENSQKELFDSIIDLPEKERDAQNALSKFDLEMRNKKRRIDNQNLPGLSDSYQNN FAAVIREINHLDEDLGKAHVNIDDVSKQVIIIQSDMDTLEDQTTKMLDDANLAEQTIQYA NRYISSNPEIASASVKAQNYFEKQYDYSKSLSTISEALENQSSGIFSKIKNDYFNAQKPK QASDTDSKDEDQ >gi|238617813|gb|GG669608.1| GENE 124 139815 - 140960 1078 381 aa, chain + ## HITS:1 COG:L122222 KEGG:ns NR:ns ## COG: L122222 COG1104 # Protein_GI_number: 15672519 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Lactococcus lactis # 1 381 1 380 381 422 54.0 1e-118 MIYFDNSATTQALPEVVDTYDKVSKSIWGNPSSLHNFGEQAFNLLEQSRKQIADLLHVHA DEIYFTSGGTEGDNWVVKGTAIQKREYGKHLITTAVEHPAIHNSMEQLKQLGYEVTYLPV DDEGRISIDDLKKAIRPDTTLVSIMAVNNEIGTIQPIEEAAELLKKYPKIHFHIDAVQGI GKGIQEKIFNERVDFVTISGHKFHAPRGIGFIYGRRGRRIAQLMNGGGQEKNQRSGTENL PAVAAMAKALRLLLEKEPKANETEHQIKQLISDHISKFDKITIFSKNTDQFAPHILCFAI KGVRGETIVHAFEKYGIYISTTSACSSKKHVASSTLTAMHVPEDVSTSAVRISLGDQNTL DEAKEFIKVFDQLYEEFDKLS >gi|238617813|gb|GG669608.1| GENE 125 140970 - 142187 987 405 aa, chain + ## HITS:1 COG:L183112 KEGG:ns NR:ns ## COG: L183112 COG0301 # Protein_GI_number: 15672361 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Lactococcus lactis # 3 405 5 406 406 436 54.0 1e-122 MHYTEIMVRYGELSTKGKNKRDFIRQLGRNVRAVLHQFPTVEVKAQRDRLHVDLNGEDDQ KVISTLQGVFGIETLYPSIKVEKDMDVIKETALQMAQEQYRSGNTFKINTRRQDKHFEYH TNQINNMLGDYVLENIDGISVDVKNPDIAIRVEVRMNGAYLSSETIHGAGGLPVGTGGRA TMMLSGGIDSPVATYLAMKRGVKIDMIHFYSPPYTSEQALNKAKQLTSILAKYSGNIQFI QVPFTEVQETIKEKVPEGYLMTIQRRMMLRIAAEITKSRHCGGVFTGESLGQVASQTLES MLAINDVTSMPVLRPLVSMDKTEIIKISKQIGTYDLSILPYEDCCTIFTPPAPKTKPNLQ RSREFENYIDVEGLMKKAVDNIQITDIKPGEEFLNQDADVFAELL >gi|238617813|gb|GG669608.1| GENE 126 142276 - 142785 410 169 aa, chain + ## HITS:1 COG:L101699 KEGG:ns NR:ns ## COG: L101699 COG2077 # Protein_GI_number: 15672286 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Lactococcus lactis # 1 159 1 158 160 123 42.0 2e-28 MQVTINGKDEKLFGNPPEVGEQLPKFKLENAEGNKVKTADIIGRITLISSVPDIDTPVCS LETRKFNQEADKYPDARFLTISNNTLEQQKDWCAAQGVRNLQLLSDESLSFGYAMKLYMP NFGALARTIFIVDKTGKIVYRQIVPEITDEPDYQDALSALEKLAKRIDD >gi|238617813|gb|GG669608.1| GENE 127 143080 - 145761 2148 893 aa, chain + ## HITS:1 COG:BS_valS KEGG:ns NR:ns ## COG: BS_valS COG0525 # Protein_GI_number: 16079861 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Bacillus subtilis # 10 889 3 878 880 1155 61.0 0 MSEKDTKASTQSTEMSTKYDPTAIENGRYNEWLQEGVFRPSGDKKAKPFSIVLPPPNVTG KLHLGHAWDTTLQDMIIRKKRMEGYDTLWLPGMDHAGIATQAKVEAKLREQGISRYDLGR EKFVEKVWEWKDTFAATIKEQWAKLGLSLDYERERFTLDKGLSKAVRRVFVDLYNKGLIY RGEYIINWDPQARTALSDIEVIHKDDKGAFYHVKYPFTDGTKFNGNNYIEIATTRPETMM GDTAVAVNPSDERYKAIVGKKVLVPLVNREVPIIADQYVDPEEGTGMVKITPAHDPNDFK VGNRHNLERINTMNPDATMNEKAGKYQGMDRFEARKAMVKDLQDQGLILSIEPIVHSVGH SERTGVQVEARLSTQWFVKMKPLAEQAVKNQDTDDKVSFFPPRFEETFTQWMDNVHDWVI SRQLWWGHQIPAWYNKDTGETYVGMEAPKDAENWEQDPDVLDTWFSSALWPFSTMGWPDD TDDMKRYFPTDTLVTGYDIIFFWVSRMIFQSLEFTHRRPFKDVLLHGLIRDSQGRKMSKS LGNGIDPMDVIDKYGADALRWFLSVGGTPGQDLKFSYDKMDSAWNFINKIWNASRYVIMN LDGIEKPKLPDKFEWQLSDKWILSRLNTTISEVSELFDKYNFGEADRKLYDFIWNDFCDW YIEMSKEALTGDNEKLKKNTQNVLAYVLDKILRLLQPIMPFVTEYLWQKMPHEGKSLVTA EYPVSNQQFDNPTAEHEMQSLIDLIKAVRNIRNEANAPLSSPIDMLVQTENPTLKQIFET NRDYIDRFCHTQELTIGDKVNAPKLSMSAVITDATIYVPLAELVDLNEEKDRVQKDIDKF EAEVVRSTKKLANTRFVDNAPEAVVNEERQKKDDYQSKLDAAKDRLQQVTSEL >gi|238617813|gb|GG669608.1| GENE 128 145852 - 147186 1025 444 aa, chain + ## HITS:1 COG:L0177 KEGG:ns NR:ns ## COG: L0177 COG0285 # Protein_GI_number: 15673139 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Lactococcus lactis # 1 439 1 423 427 342 42.0 1e-93 MTIETYDQALAFIHGRTKFKKIPTLKRMRRFLDELGSPDKRIKAIHIAGTNGKGSTIAFL RNILQEDGLKVGSFTSPFLIRFNERISVNGKPISDNDILRLTNIVYPVVAKLDDALLEGG PTEFEIITAMMFEYFSEGHADIVLVEVGLGGLLDSTNVMTPELSVITTIGWDHMHILGDT LPKIAYQKAGIIKPKVPVVVGKIPEAPLKVIEHTASGKKSPMTILGKQFTVNNLGMIDWE QHFSFKSDHDEFNDLSTGLIGDYQTDNAALAIQAYLNYCQLSSRPVNHNSVIAGIKQTKW GGRFERISDHPTIVIDGAHNISAVDEIVDLLESNFSKGKVYVLMGILADKQADKMVEKMA TVKNVSIILTSFNGPGKRNAADPQVLEEQVDSKENKKTVTDVIDDWQAAIDTIQKKLMTD DMLLITGSLYFISDVRKYLLASLN >gi|238617813|gb|GG669608.1| GENE 129 147332 - 148348 898 338 aa, chain + ## HITS:1 COG:lin1583 KEGG:ns NR:ns ## COG: lin1583 COG1077 # Protein_GI_number: 16800651 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Listeria innocua # 4 338 1 335 337 400 67.0 1e-111 MDNVFGLGEKNIGIDLGTANTIVYVEGKGIVLREPSVVAKSTKNGDIIAVGEEARAMIGR TPASINAVRPMKDGVIADYDTTVAMMKYFIEKALGHSSGKPYVMVCVPTGITAVEKRAVI DATRVAGARDAYVIEEPFAAAIGAGLPVMDPTGSMVVDIGGGTTDVATISLGGIVSSRSV RMAGDKLNESIAQYVRQKYNLLIGERTAEQLKIDIGSASPKAAKDIEAVPVRGRDLVTGL PTTVQVTGSDVNEAINESVAEIIATIKETLEETSPEIAADVIDHGIVLTGGGALLRNITD VIAEATQVPVSIAADPLDCVAIGTGESLKSINVMKKKQ >gi|238617813|gb|GG669608.1| GENE 130 148394 - 149263 664 289 aa, chain + ## HITS:1 COG:lin1582 KEGG:ns NR:ns ## COG: lin1582 COG1792 # Protein_GI_number: 16800650 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Listeria innocua # 8 289 1 276 295 171 35.0 1e-42 MKRMEAIMQKFFSSRKLVIVIVCLIISFGLMSVSVAFRNNRNTPPLVQQFGNDIVGFADR VVAVPMNGIHHGFISINNLLNTYQENQKLKSKVDQLAQTQVKDQVLERENKQLKRQLNVG STLTGYEKINAAVITRTPSSWASQIIINKGQAAGVKKNMPVIAGPGLIGTVAEVNKTNSK VVLISNTAENSNRFAIQIVGEGSRIVNGIITSYDSQSNRIIMGNITSKAKLSKGDRVTTS GLGGIIPKGIYVGTVSKISEDDYGLAKKVYIKPAANLNDIEVVSVAVRN >gi|238617813|gb|GG669608.1| GENE 131 149279 - 149803 192 174 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0901 NR:ns ## KEGG: Lbuc_0901 # Name: not_defined # Def: rod shape-determining protein MreD # Organism: L.buchneri # Pathway: not_defined # 1 174 1 174 174 225 74.0 6e-58 MRRRIPITIIFVVGQFIAFFLDGSISQILSGTLYKYPNSLVPALTLLWLVLAVFFGDRKK LHLGIWAAVIGFIFDMYYTGLLGVYVFIFPLVIYLCQSVYQMLPPNFMSGFLVYFLGITV WTTLGFIANAFIGQTSSSVAQYLVNTLAPTLAINLVFMALAYFPVASLYRSHRR >gi|238617813|gb|GG669608.1| GENE 132 149819 - 150502 495 227 aa, chain + ## HITS:1 COG:lin1580 KEGG:ns NR:ns ## COG: lin1580 COG0850 # Protein_GI_number: 16800648 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation inhibitor # Organism: Listeria innocua # 1 223 1 224 225 97 28.0 3e-20 MQDAAVLKGTNDGYEIILDDEADLGDIYTSLRSLLEKLRTQTASTHPQPISFDIQTGLRL LSAGNRSEIEKIFSDFQLFSVHKITSDVMTKEESNRILDQETVHVVDRIIRNGQEVHVQG DVVFLGIIHEGGKLFVGGNIYVLGDVHGVIQAGFPDLEDKMIIGDVHNAQQVRIGEQYEI LDDTNQKITENSVVYVNDLHVLDYGKVEDLKQINPKFFNQIGGVING >gi|238617813|gb|GG669608.1| GENE 133 150495 - 151301 716 268 aa, chain + ## HITS:1 COG:lin1579 KEGG:ns NR:ns ## COG: lin1579 COG2894 # Protein_GI_number: 16800647 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation inhibitor-activating ATPase # Organism: Listeria innocua # 1 265 1 263 266 352 65.0 4e-97 MGKAYVITSGKGGVGKTTSSANIGTALAMLGKKVCLMDLDIGLRNLDVVLGLDNRIMYDI VDVASGRASLGQALVKDKRFDDLLYLLPAAQNTDKTALTQDQVVQIVNEIKPDFDYVLID CPAGIEQGFMNAIAGADSAIIVTTPEISAVRDADRVVGLLEQHPLQEEPHLIINRIRTHM MKDGSVMDVDEITHHLGVELLGIVFDDDAVITTSNQGEPVVLQADNPAGQGYRDIARRLE GESVPLMQMTDEVHPSFWKKIGNWFKKG >gi|238617813|gb|GG669608.1| GENE 134 151370 - 151513 71 47 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIRIVNHIKFQKAHDDGKWVFEWFASHLGVIFLNEVGKSGEHVIAEV >gi|238617813|gb|GG669608.1| GENE 135 151748 - 152392 406 214 aa, chain + ## HITS:1 COG:lin1851 KEGG:ns NR:ns ## COG: lin1851 COG0765 # Protein_GI_number: 16800918 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 2 214 1 213 213 248 67.0 5e-66 MIQYIEQILPALLSGTKMTLSIFFWTLICSIPLGAVLALGLVSKFKPLVWLLNLYDWLMR GTPLLLQLIFVFYGLPVIGIIFERYDAALFAFILNYTAYFAEIFRGGFQSVPRGQFESAR VLRLSYGQTIRKIIIPQVFKIVLPSIGNEVINLVKDSSLVYVIGLGDLLRAGNVATARDV TLLPLVLVGIIYLALTAICTIVLKVIEKRSSVWR >gi|238617813|gb|GG669608.1| GENE 136 152405 - 153040 399 211 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 204 1 209 245 158 40 5e-37 MLEIRNLTKKFGSKTVINNLSMTVNDNEIMAIVGPSGAGKTTLLRCITGLERVNSGAFYW DGKQFDPANPDKGDTIIGVVFQDYQLFPNLTVMGNITLAPTMVKKESKSQVTENAMTLLK RLGLEGKETLYPYQLSGGQKQRVAIVRALAMNPKILCYDEPTSALDPALRDEVAQIILDL KKQEMTQIVVTHDMEFAKHVADDIKRVEQIQ >gi|238617813|gb|GG669608.1| GENE 137 153055 - 153906 682 283 aa, chain + ## HITS:1 COG:lin1849 KEGG:ns NR:ns ## COG: lin1849 COG0834 # Protein_GI_number: 16800916 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 5 275 1 266 271 265 47.0 8e-71 MQKVVKKCPLVIVTLLLMFVLSGCRFESRQKMETNPDTWSIVSKQKKIVIGLDDSFVPMG FETKSGKIVGYDVDLAKAVFKQYGIKVDFQPIDWSMNVTELRNGTIDLIWNGFSMNPQRA KKVTFSEPYLVNKQVLISKKKNHINSFADMKNRVAGVQAGSAGAMDIDSQPKLLKDRIKN HTPILYDSFTEAFIDLNSDRIQGLLIDSIYAGYYIGHQRNRATYQSVPSQFPKEYYGVGM RKGDTKLKQKIDAGLNRLAKDGQLAKINKKWFGTNAYSPLMKK >gi|238617813|gb|GG669608.1| GENE 138 154032 - 155312 810 426 aa, chain + ## HITS:1 COG:L32666 KEGG:ns NR:ns ## COG: L32666 COG0612 # Protein_GI_number: 15673955 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Lactococcus lactis # 11 424 2 410 418 181 30.0 2e-45 MNIQIAQGVDLKVIQTSQFKNNTIVFNFSIPSNYKNFAKLALLADLLENASLKFPSEMLV SRKLSEMFGASYGVTVLRYGNQHTLRIRLTFPNNHYLPHKEDLLNDAMAFLREMIERPFA KNDQFDAHYFKIHQTNLMSYLDSISDNKEFYSTLQLQKLYYANDLNQGTYLLGNIDSIRE LNASDLYNFYRAFIQQATVTVIVAGQIDQAQVVSRLKSFSTLSDRNDLGLKLFIEPELPK VPREKTTVFPGSQSLLNIGYRLPIYFGDDSYFAANVFNQIFGASTRSLLFTNVREKASLA YDIHSSYNSFSGMLSVQAGIEFKNLSQVIQTTDDQLTATADMAYPESLLAGVKKSMINQH RSQSDYLSTLAERQYVRQISGVAFGDSQWEQLVNDVTKKDVAEVAKRVQYQARYILQSQG DNDENN >gi|238617813|gb|GG669608.1| GENE 139 155299 - 156579 940 426 aa, chain + ## HITS:1 COG:BH2392 KEGG:ns NR:ns ## COG: BH2392 COG0612 # Protein_GI_number: 15614955 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Bacillus halodurans # 1 412 1 414 432 298 39.0 1e-80 MKTIDYASFNEQLFVEKLENGLTVYLQPKKGFEKSIAILGVNYGSVDTDFSINGTPVSQP AGIAHFIEHKMFDKKDYDVFELFNKTGASANAYTSFTKTNYLFSTTEDLRDNLLILLDFV QKPYFTTEKIEREKGIIDQEINMYLNDPDNRIYFQTIQDLYPQSPLSEDIAGTVDSVSKI TLADVQRAYETFYRPDNMSLFITGRVNPEETLSWIKENQRQKSWSVPAVIERNLVFPTVA NDKINKYQMAISRPKASIGIRGNDSVPRGREGLAYEIAISLVLDLFFSETAEDYTQLYQD GVLDDSFSWEFENERGFHFAILNGDTNKPQDFIDKLLKIIRQIPKKLSGMSSEFELQKKE LLGNYIEMMDSEEAISGQFDGFLSEPLTIYDEVGILDSLTLEQTVAFAKQYFDSASILSE IIQAND >gi|238617813|gb|GG669608.1| GENE 140 156664 - 157746 986 360 aa, chain + ## HITS:1 COG:lin1432 KEGG:ns NR:ns ## COG: lin1432 COG1426 # Protein_GI_number: 16800500 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 10 278 4 287 311 110 32.0 6e-24 MNDEKDNLTIGKKLHDARVAKGYTLDDLQKNTKIQKRYLIAIEDNDFDSLPGEFYVRAFV KQYADSVGLNGNELLSQFDTKLPDTEDPEYVNRVNSDNPKTRSAQRQVDQRNEKIRRYIP VASVSVVVLVILIAIWVAAAHSTRDTSKTQIETSKVSVSGNKSSKASSSSSSSAAKKNTK KKAATKKLVFKKLTESGSNVTYQVTGASSKPKIKIATTGSGSAWTSVSANGSTLWQAAQA GGKSHTVTLPSSVSTATINTGNAPQTVIYVSGKRLKLSDPSDGSSNQVRVVTLQFGKSGS TTSTSSSSTTDSSTTGTTGSSTTGSTEGTSSTTGTTGTTGTNDTTGNTTTGTTTGSTTGY >gi|238617813|gb|GG669608.1| GENE 141 157771 - 158352 437 193 aa, chain + ## HITS:1 COG:lin1433 KEGG:ns NR:ns ## COG: lin1433 COG0558 # Protein_GI_number: 16800501 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphate synthase # Organism: Listeria innocua # 1 192 1 191 192 180 54.0 2e-45 MNLPNKLTIFRIILIPFFILILAVPILSGSTVVAGTVISYTRWLAALIFIVASATDFLDG QIARRRHLVTNFGKFADPMADKMLVMTAFIFLVELNEAPAWVITIIVCRELAVTGLRLII VENDGKVVAAAWPGKIKTTTQMLAIIFLLLNNIFFDAINFPFAQVMLYICLFFTIYSGID YFVQNRSVFADSF >gi|238617813|gb|GG669608.1| GENE 142 158607 - 159083 237 158 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 8 155 756 903 904 95 38 3e-18 MSLEQKLVEQLLKKHITITAAESLTAGLFQSTLGNVSGVSKVFEGGFVTYSDKVKEQLLH VPHDVIAENSVVSEPTAIWMADQARRIMDKDLAVSFTGVAGPDALEGNPVGTVWIGIAFG AQISYAKKFQFEGLRNQIREAAVEAGLKMALSAITSDK >gi|238617813|gb|GG669608.1| GENE 143 159180 - 160322 1201 380 aa, chain + ## HITS:1 COG:lin1435 KEGG:ns NR:ns ## COG: lin1435 COG0468 # Protein_GI_number: 16800503 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Listeria innocua # 3 328 2 327 348 485 76.0 1e-137 MADQRKVALDKALKSIEKEFGKGSIMRMGDKADTQISTIPTGSLALDEALGVGGYPRGRI VEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDT GEQGLQITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGT ISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEIRRAEQIKNGTNIIGNR VRIKVVKNKVAPPFKRAEVDIMYGKGISQSGELVDMAVDKDIIDKSGSWYSYGEERIGQG RENAKGYLEEHQDMYKEVERKVRDAYGIPDDADTGNSTKDSSNDDKGTNKKTSDKKTEKP VKTADSNSKSVDNIDLNIGK >gi|238617813|gb|GG669608.1| GENE 144 160628 - 162211 1432 527 aa, chain + ## HITS:1 COG:lin1436 KEGG:ns NR:ns ## COG: lin1436 COG1418 # Protein_GI_number: 16800504 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Listeria innocua # 1 527 1 520 520 493 55.0 1e-139 MSMAGIILAIIAIIVVGFVGILSFLIGKSAQKKIQKAKLEDAKGSVKSILADANKQAETV IKEATLSAQEKNHRYRSKIEKELKQRRAEIQKQEDRLLQREEALDRKDSTFERRENSLNR KEQKINHEQQNLVTQQEKANSLIEARQTEVERVAGLTQDEARNVILKETSDQLAEEKARM VKESYYQAQSEADKNAKDLIVEAIQQSSADVVSETTVSVVSLPNEDMKGRIIGREGRNIR TFETLTGIDLIIDDTPEAVVLSGFDPIRREVAKMTLEKLIKDGRIHPARIEEMVDKSRKE LDERIQEIGEETLFDLGIHSMSPEMIKMVGRMNFKIYQGQNLLAHSTEVAKLSGAFASEL GEDVTLAKRAGLLHDIGKAVNNGVVQGSHVQVGVDLAKKYHESPVVIDTIQGYEDEHQPK YIISELVAVAEKIAISRPGAHSESLESFVHRLDSLEKITDGFDDVQKSYAIQAGREIRVI AKPDNITDTQAIVLARRIKQKIETEMKYPGHIKVTVIREIRSVEYAK >gi|238617813|gb|GG669608.1| GENE 145 162300 - 163100 704 266 aa, chain + ## HITS:1 COG:lin1438 KEGG:ns NR:ns ## COG: lin1438 COG1692 # Protein_GI_number: 16800506 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 263 1 262 267 300 54.0 2e-81 MRVLFIGDVVGDKGVSMIETYLPKIKQDVKPQVTVVNGENATPVGRGISQSIYKRLMSYG VDVVTLGNHAWSNSEILDFIDDTNRLIRPYNFPKNVTPGKGYTLINVNGKQLAVLNFQGR VFMDNLDDPFSLANDLVNKLNKTTNCIFMDFHAEATSEKLAMARYLDGKVSAVVGTHTHV QTNDARILPQKTAFLTDVGMTGPADGMLGMKPDSVISRFLNQRPARFQVLETGRGILSGC VIDIDDKSGHATSIKTILYTDDQVIG >gi|238617813|gb|GG669608.1| GENE 146 163210 - 165798 1829 862 aa, chain + ## HITS:1 COG:lin1440 KEGG:ns NR:ns ## COG: lin1440 COG0249 # Protein_GI_number: 16800508 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Listeria innocua # 1 860 7 860 860 917 54.0 0 MMVQYQKIKDQYPDAFLFYRLGDFYELFNDDAIKGSQLLELTLTNRSRNAENPVPMCGVP HKAAQNYIDILVDQGYKVAICEQMEDPRLTKGMVKRAVIQLVTPGTQVDVGSQNAKSNNY LTAVTYDQDNRVFGFSYADLSTGELKVAKLDTQAELINELVSLQTKETVVGSRFPKTILE TIQKLGILISHQEALPINASVSYLSQDVDKEPLKQVVKMLLDYIQTTQKRSLQHLKRAVV YEPSDFLELDHNSQYNLELTRNIRTGKKGGTLLWLLDQTKTAMGGRKLKQWIERPLVNKS KISERQDAVGVLLDHYYERSQLQDELIKVYDLERLAGRIAFGSVNGRDLIQLKTSLQQVP KIKYILEQIADNSFKDMLKDLIPLDDIVDEISRSIIEQPPISVTDGGVIKDGFDDQLDKY RDASNNGQKWLAELEAKERQVTGINNLKVGFNHVFGYYIEVTKVNLNKIPENRYQRKQTL ANAERFSTPELKEKEALILEAQEQSKTLEYKLFVRIRDDIKKSIKRIQALADAVASIDVL QSFANVSEEYRFIRPTLTNDHRVKVIDGRHPVVEKVLGHQQYVPNNVDMGEDTSVLLITG PNMSGKSTYMRQMALCVIMNQMGCFVPAKKATLPVFDKIFTRIGAADDLISGQSTFMVEM KEANDAIENATPNSLILFDEIGRGTATYDGMALAQAIIEYVHNNIGAKTLFSTHYHELTS LDESLKQLQNVHVGATESNGELVFLHKIQPGPADKSYGIHVAKLAGLPNGLLKRANHILT DLEKKDDQPDKINATPSKQNHDERVKTKQAGEEEQISLFPMEQVDDNQEEVVAQLKNLDL MSKTPMQIMNQVYKWQQKINRE >gi|238617813|gb|GG669608.1| GENE 147 165809 - 167755 1160 648 aa, chain + ## HITS:1 COG:SPy2121 KEGG:ns NR:ns ## COG: SPy2121 COG0323 # Protein_GI_number: 15675871 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Streptococcus pyogenes M1 GAS # 1 647 1 657 660 604 48.0 1e-172 MKQIHELPAILANQISAGEVVERPASVVKELVENAIDAHSTEIDITVEDSGLKVIKVVDD GDGIDSSQVQTAFLRHATSKITEQRDLFRVRTLGFRGEALPSISSVSNVELKTSTGSVGT EVVFKGGKFISQQASESRKGTTVIVSSLFYNTPARLKYLSSPNTELSKISDIVNRLALSH PEVSFSFISNGRELLRTSGRGDLLQVLGAIYGVKTVSKMQPIKSKTPDISIDGYVSLPEL TRSSRNYISLILNGRYVRNFPLTKSVINGYGSKLMIGRFPIAVVNISADPALIDVNVHPT KQEVRISEEPKIGGMLSNAIREMLADKQLIPDATRDFKKSFAPSDQSINYSKSVIQSIPE EQPLFAVNSKPVVSTKQQNEVDPIVIKNRDDLQSPRVAKLDSLLSSEASSVPVFDESGFG VTAKVQPKNPVQVTKPEQEELVVETGFPDLQYIGQIHGTYLVAETPSNMYLIDQHAAQER INYEYYRKAIGEVGRAQQKLLVPIVLDYSTSDFLLVNEKIPLLNELGIHLEQFGQNSFII REHPMWFKAGQEESTIKEMIDWILSDHRLSVAAFREKTAIMMSCKRAIKANHHLDERQAK ALLAKLPECENPYNCPHGRPTLVKFTNEDIEKMFKRIQDPHHTDEEIL >gi|238617813|gb|GG669608.1| GENE 148 167831 - 168427 617 198 aa, chain + ## HITS:1 COG:L0266 KEGG:ns NR:ns ## COG: L0266 COG0632 # Protein_GI_number: 15674189 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Lactococcus lactis # 1 197 1 196 197 172 47.0 5e-43 MYEFMDGQIVDITPAYIVLLVNGIGYLIYTADPYRFNVDQNKTIRVYVYQSVSDSAILLY GFYEADDKKLFEKLIAVSGIGPKSALAILAGNDRSGLVSAISNKDVKFLTKFPGVGKKTA QQIILDLQGKVGDLSQIVQARSGQSASEQSDELRDAISALEALGYSAKQIDAIRLELGKD KALTTDEYLSLGLKLLMH >gi|238617813|gb|GG669608.1| GENE 149 168441 - 169460 876 339 aa, chain + ## HITS:1 COG:L0267 KEGG:ns NR:ns ## COG: L0267 COG2255 # Protein_GI_number: 15674188 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Lactococcus lactis # 16 337 3 324 324 415 63.0 1e-116 MDKDDRIVSPENVNGDENNIEKTLRPQTLGDYIGQTDVKNELKVYIKAAKQREESLDHVL LYGPPGLGKTTLAMVIANEMGVNIRTTTGPAIDKPGDLLSLLNELNPGDVLFIDEIHRLP KVVEEMLYSAMEDFFVDIIVGQGSGAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVE HMNYYEVSDLEEIVQRTAGIFQIPILKSGAHEIALRSRGTPRVANRLLKRIRDFAQVFDK DSIDLEIVRYALEKLKVDDLGLDATDIKLLRTMIDYYDGGPVGLKTLAANIGEETDTIAE MYEPYLLQIGLIKRTARGRRVTPKGYEHLHYPNNPDNLV >gi|238617813|gb|GG669608.1| GENE 150 169457 - 170515 797 352 aa, chain + ## HITS:1 COG:SP1416 KEGG:ns NR:ns ## COG: SP1416 COG0809 # Protein_GI_number: 15901270 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Streptococcus pneumoniae TIGR4 # 15 352 5 342 342 516 70.0 1e-146 MKGIGTLKTTYTLEDFDYKLPHELIAQTPIKDRDESRLLVLNKETGDMQDRRFYNIIDYL NPGDALVMNDSKVMPARIYGVKKDTGAHIEVLLLHNIDGDRWETLMKPAKRAKVGTVIDF GEGQLQAVVTKELDHGGREIEFKYEGIFIEILERLGETPLPPYIKEKLDDPNRYQTVYAK EMGSAAAPTAGLHWTKELLQKVADKGVHLVYLTLHVGLGTFRPVEEDNIEDHKMHSEFYR LSEEASKTLNDVRKNGGKIVATGTTSIRTLETVGTKFNGEIRPDSGWTDIFIKPGYQWQV VDSFITNFHLPKSTLVMLVASFTGRENILNAYQHAISEKYRFFSFGDAMYIH >gi|238617813|gb|GG669608.1| GENE 151 170535 - 171677 863 380 aa, chain + ## HITS:1 COG:SPy0203 KEGG:ns NR:ns ## COG: SPy0203 COG0343 # Protein_GI_number: 15674403 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 5 380 6 380 380 629 76.0 1e-180 MQPAISYRLIKKEKHTGARLGEITTPHGTFRTPIFMPVGTQATVKTLAPEELNDMGATII LANTYHLWLRPGEDIVKEAGGLHKFMNWDHGILTDSGGFQVFSLAKNRDITEKGVTFKNE INGDRMFLSPEKAIQIENDLGPDIMMSLDECPPFFETYDYVKKSVERTSRWAERGLKAHR NPDTQGLFGIVQGAGFEDLRKQSAQDLVSLDFPGYSIGGLSVGESKAEMNRILETTTPLL PETKPRYLMGVGATDSLIDGVIRGIDMFDCVLPTRIARNGTVMTSHGRLVVKNAQYARDF RPLDDQCNCYTCRNYSRAYIRHLIKSGETFGLRLASYHNLYYLIHLMKRVQQAIMNDNLL DLRAEVFEQYGYNKANAKNF >gi|238617813|gb|GG669608.1| GENE 152 171802 - 172155 341 117 aa, chain + ## HITS:1 COG:SP2029 KEGG:ns NR:ns ## COG: SP2029 COG1862 # Protein_GI_number: 15901850 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Streptococcus pneumoniae TIGR4 # 1 64 21 84 99 70 50.0 6e-13 MIRPQKKQQQKRRDQLSKIKPGDQVVTIGRLHGVIDEINEADKTVTLDCDGIYLVFDLSA IAQVKQPAVTAPAASATATESANASGNQSDDKTNESNSDQTDQKPNSSADDSKTEDK >gi|238617813|gb|GG669608.1| GENE 153 172254 - 173342 779 362 aa, chain + ## HITS:1 COG:SPy1846 KEGG:ns NR:ns ## COG: SPy1846 COG0389 # Protein_GI_number: 15675671 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 6 360 12 364 364 367 52.0 1e-101 MGTIFRKIIHVDMDAFYASIEERKDPRLKLKPLIVAKDPKLTGGRGVVSTANYVARKYGV HSAMSVQKALELCPKAVFRFSGFELYRAVSEQIHQIFHEYTDMVEYVALDEAYLDVTKNK RHLDDPIQISRMIQSEILRRTKLTCSVGISYNKFLAKEASDYAKPFGLTIIQHKDALEFL KRLPIEKFRGVGKKTIPKMHLLKINNGVDLLSWSQMDLINEFGKFGYVLYERARGIDDRP VEYQRIRKSIGKERTFGPEIDNQNQIDDHLMRIAELVASEMKKKKKHGKTLVLKIRYKDF STFTKRVTLDNYIKNNPDDYFSLASDLLAEMPDIATGVRLLGITLTNLADLNYENIVLDL FH >gi|238617813|gb|GG669608.1| GENE 154 173513 - 174460 762 315 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 1 313 1 311 311 298 48 4e-79 MSVQEQILNQIKQYKTIIIHRHKRPDPDAIGSQMGLAEIIRASFPDKQVFCAGKNFPGFK WLGTADEISDDQYKDALVIVVDTANQPRIDDDRYTKGKALIKIDHHPNDDQFGDPMWVVP EASSTSELIFDFFDMFRPELKLSDEGARLLYAGIVGDTGRFMYPSTSSHTLEVASKLTTY RFSASDVNQAEDEIDMPLARLSAYVYENLKILKSGAAYLILSNQVLKPFGLGDESTSSIV PLPGRIKEVLSWAIFVQQKEGDYRIRLRSKGPEINELAKKYGGGGHPLASGAVVDNDDQI KPFIQDLDDLVKNSK >gi|238617813|gb|GG669608.1| GENE 155 174469 - 175830 1119 453 aa, chain + ## HITS:1 COG:L0340 KEGG:ns NR:ns ## COG: L0340 COG0513 # Protein_GI_number: 15672392 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Lactococcus lactis # 3 448 2 445 446 503 57.0 1e-142 MTQFSEFHLKPFILNALDDLKFTKPTPVQEKLIPVILQHRDVVGQSATGSGKTHAFLLPI FNDIDPKIDEVQAVITTPSRELAYQILDAAKQLAKFSPDPISIGSYVGGTDKKRQEDKLK KEQPQLIVGTPGRVWDLIKNGGLDVHTASKLVIDEADMTLDMGFLDVVDHIAASFGKHVQ MMVFSATIPQKITVFLKKYMDNPVIEEIPVSSIISPTIDNWLISTKGQDKNQLIYHLLTV GEPYLVLIFANTRKRVEELTEYLRGQGLKVAMVHGGVKPRERKQIMKRIKNLDFQFVVAT DLAARGIDIEGVSQVINDDIPTEDLEFFIHRVGRTGRNGMSGTSITLYSPDEEKEVEELE GMGIHFKPKALKNHEIVDTYDRRRRQTHRKKREKLDPTMIGLIKKKKKKIKPGYKRQIKM SISRKEEMDRRVSKREESRAKRKQRKQSSKRYK >gi|238617813|gb|GG669608.1| GENE 156 176099 - 178741 2233 880 aa, chain + ## HITS:1 COG:lin1539 KEGG:ns NR:ns ## COG: lin1539 COG0013 # Protein_GI_number: 16800607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Listeria innocua # 1 877 1 874 879 978 56.0 0 MKTLSSSQIRQMFLDFFQEKGHTIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKN PRMTSSQKSIRTNDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAIAWAFELLTSPKWFGW DKDKLYMTVYPKDTDAKKYWEAVGVSPDHIIEIEDNFWDIGQGPSGPDSEIFYDRGADFD ELAPDDPENYPGGENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLERVVSIFQH AKTNFETDLFLPMIKKTEAFSDHKKYGVNKQDDVAFRIIADHARAITVAIGDGALPSNVG RGYVIRRLIRRAIVNGQRLGINASFLYKLAPVVGETLKSYYPEVLEQRDYIEKVIRSEED RFNETLADGLKLLHDVIADTKAESKNEIDGPTAFKLYDTYGFPYELTKEEASEVGLGVDK QGFEVEMHKQKERARNARSGAKSMGVQRDLLVKVKDDSEYVGYDTLDVKDAKLIDIVENE KLVSESKADTIEVIFDKTPFYAEMGGQVADRGVILDENGDKVADVIDVQHAPNGQNIHTI KTQESLVKGQRYHLVVDKLFHSRVEKNHTATHLLDQSLRNVLGGHTQQAGSLVEPGYLRF DFNHFGQVTDEDLQKVEQMVNKQIFKEIDVKTVVTDPKTGKKMGAIALFSEKYGDKVRVV SIGDFSVEFCGGTHVKNTRDIGLFKIVSESGVGAGVRRIEAVTSKDAFKLLNTQASELKQ ISDSLKVTQLKDVPTRVEQLQDEIKNLKAKQDSLEAKLAGQQAESVFNHKQEAGQSTIIT GIIKDAGMDQLRQLTDTWRSKRLSDVLVLGTGSGQKANLVVAVSDNKIKDGIKAGDLIKS IASNIKGGGGGRPNMAQAGGKDPSGLDKAMKAAVEWLGNK >gi|238617813|gb|GG669608.1| GENE 157 178850 - 179131 361 93 aa, chain + ## HITS:1 COG:BH1268 KEGG:ns NR:ns ## COG: BH1268 COG4472 # Protein_GI_number: 15613831 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 84 1 85 90 108 68.0 2e-24 MSSLDKTMFFNFNEDQPKDVRDTLLTVYKALEEKGYNPYNQIVGYLISGDPAYIPRNLDA RNLIRRHERDEIIEELVRFYLDNHPNDSKKGEQ >gi|238617813|gb|GG669608.1| GENE 158 179137 - 179562 401 141 aa, chain + ## HITS:1 COG:SPy2113 KEGG:ns NR:ns ## COG: SPy2113 COG0816 # Protein_GI_number: 15675863 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Streptococcus pyogenes M1 GAS # 1 134 4 137 139 185 70.0 3e-47 MGLDVGSKTVGVAVSDSLGWTSQGVEIIPIDEENGEFGLERVAQLVDKYEVDGFVVGLPK NMNNSLGPRAEASEQYGDRLEKKFKLPVDFEDERLTTVEAQRMLTEEADISRRKRKKVID KLAAGLILQNYLDRKGKLTRI >gi|238617813|gb|GG669608.1| GENE 159 179575 - 179901 356 108 aa, chain + ## HITS:1 COG:BS_yrzB KEGG:ns NR:ns ## COG: BS_yrzB COG3906 # Protein_GI_number: 16079792 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 7 98 5 93 93 74 51.0 5e-14 MAEDPTQQQITLVDDNGEETLYDVLFTFKSEDFDRSYILIYPAGKKDDDEVEIQAYALPA GDDPSDPQGGELQPISTDKEWDMIESVLNTFLGKDGDDQDSADDSDNQ >gi|238617813|gb|GG669608.1| GENE 160 179995 - 180261 300 88 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0929 NR:ns ## KEGG: Lbuc_0929 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 73 1 73 80 94 73.0 9e-19 MSKDEKRRFKTTIGGKNYTLVGKGSDEHLQAVSDLLNEQLKQLRQLMPNISDEQRSILVA FNAISKQFELEEQLAKGQSQSAQSQESE >gi|238617813|gb|GG669608.1| GENE 161 180281 - 180787 313 168 aa, chain + ## HITS:1 COG:BH3108 KEGG:ns NR:ns ## COG: BH3108 COG1286 # Protein_GI_number: 15615670 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for colicin V production # Organism: Bacillus halodurans # 1 162 4 177 179 77 30.0 8e-15 MIILLILAIGFLTGWRKGFVVEVLNLIGFIASMTAGVLFAGPIAAFVNQFIDRSGGSNSA HLMIKLFIFVVLFSLVWQVIRILRRVLTPVTKLPLINQANAILGGGINLITKYLVIFVML NVLILLPSQGIQNQYQQSAVSQWIVRQTPVLSEKLANFWTSNSNEEGI >gi|238617813|gb|GG669608.1| GENE 162 180784 - 183150 2191 788 aa, chain + ## HITS:1 COG:lin1195 KEGG:ns NR:ns ## COG: lin1195 COG1193 # Protein_GI_number: 16800264 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Listeria innocua # 1 788 1 785 785 647 48.0 0 MNEKVLETLEYNKIKDQLANYLTTDRGREIIDQLRPSSKFEEVDHRLKETEDGANIVRLQ GEIPIPKLTEISPYMKRLRIENASLSGTELSHITKLLRAVRTINDFFDNFQDEDVNLTVV SQIVSQLTLMPEITKRMVQSINDDGSILDTASSELRTIRRTINRTQNDIRSRMGKYLKGS DSKYLTESIITMREDRFVLPIRADYKQHFGGIVHDQSASGQTLYVEPSNVVEMNNQLRRD QLAERAEERRILAELTDLIRPYRSELLNNMNLVGQLDFVNAKAKFAHQIGAVQPEISREN VVNLRRARHPLIARDKAVANDIQIGDGYRTIIITGPNTGGKTITLKTVGLLQLMGQSGLF ITANEESQIGVFDDVFADIGDDQSIEANLSTFSSHMDNIISILNGMSSQSLILLDELGAG TDPKEGAALAMAIIDAIHQSGCELIATTHYPELKAYAYNRSGIINASMEFDIETLRPTYR FLMGIPGQSNALNIASKLGLSKEIIEKARAFTDSENQDINNMIDELTAQTKRAHDEADQL DEQLTDSTKLHDDLQNQFTQYQNQKDHLLEQAREQANQVVEKAKISADKIIADLHKKQQQ VGQSAIKENELIDAKGALNRLEVTPNLKKNKVLRKEKAKHDFHPGDEVLVKSYGQQGTLI RQEKNGAWEVQLGILKMQIDENDLEKAAPEKKAKQKYQTQVSRTRSSGMSPTLDLRGHRY EEAMYELDRYIDSALLAGYPSVTIIHGKGTGALRKGVTEYLRSNARIKSFGYSAPNAGGD GSTVVKFK >gi|238617813|gb|GG669608.1| GENE 163 183242 - 183553 323 103 aa, chain + ## HITS:1 COG:lin1196 KEGG:ns NR:ns ## COG: lin1196 COG0526 # Protein_GI_number: 16800265 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 1 101 1 102 103 136 62.0 9e-33 MVKETTDQTFENDTAKGVTLTDFWATWCGPCRMQSPVVEELADELDNVTFNKMDVDKNPD TPSKFGIMSIPTLLIKKDGQVVDTVVGYHPKEQLKKVLAQYTD >gi|238617813|gb|GG669608.1| GENE 164 183653 - 184165 356 170 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0934 NR:ns ## KEGG: Lbuc_0934 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 168 1 168 172 216 63.0 2e-55 MDNETYSTIVEDPQMANLLGQALIRDDLLPSILGSDNHEISYWAGKHLSRSHRLANYDDL IAFFTQFKLGDLSLLKKSSGQLNWQLSGDIVKKRLDLFDDPDFYLETGFIAQSCQYIADQ TAEAEITKTNPSKGIVLISTFLGKDKPVDDQEANSLFKIKHPESEDSSNE >gi|238617813|gb|GG669608.1| GENE 165 184295 - 185113 404 272 aa, chain + ## HITS:1 COG:L0120 KEGG:ns NR:ns ## COG: L0120 COG0796 # Protein_GI_number: 15673264 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Lactococcus lactis # 1 254 1 252 271 220 43.0 2e-57 MDNRPIGVMDSGVGGLTVLREIVKILPNESYIFVGDQANLPYGQKSPETVRKLTKRIADY MLKQNVKMFVIACNTSTAASLDYLKKILPIPVIGVIAPGAESAVAATNNNKIGVIATNGT VNSGVYQRIIKSLDPKSDVYSLGCPDFVTMVEHGDAGSELAREKVSHQLAYFHDKPIDTL VLGCTHFPVLETEIKDAVNSGINLIDPGISTAKNVADYLRSHHQMRDSSQSPQIKSFFTT GNQNEFTKIADQLLGKRITADHLSLGKEDVIS >gi|238617813|gb|GG669608.1| GENE 166 185110 - 185709 375 199 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90023287|ref|YP_529114.1| ribosomal protein L33 [Saccharophagus degradans 2-40] # 7 193 4 194 200 149 43 3e-34 MKKPSIIVIASKNANKVKEFDEAFKGTDIKIESLKTFSNVPDVEETGQTFEENAFLKASA IMAFTKLPVIADDSGLVVHALNGQPGVHSARYAGDHDDDANNAKLLKEMQNKTNRDAYFE SVLIYLTPEGDKVISKGRVNGQILRARRGSNNFGYDPLFYVPEQQLTLAEMSTHDKNAIS HRGRAIRQLIGQLNERWDS >gi|238617813|gb|GG669608.1| GENE 167 185847 - 186215 320 122 aa, chain + ## HITS:1 COG:lin1203 KEGG:ns NR:ns ## COG: lin1203 COG0622 # Protein_GI_number: 16800272 # Func_class: R General function prediction only # Function: Predicted phosphoesterase # Organism: Listeria innocua # 2 122 49 168 174 89 40.0 2e-18 MHIVRGNMDHAAFAEDEISKIDGKTILLTHGHLHGVNSGLLTLELFAKSKEANIVLFGHT HQLGVTQDQGILFVNPGSISLPRGQYAYIGGTYAIISSKNNKLVVQYYDRKFNAVDELRF SF >gi|238617813|gb|GG669608.1| GENE 168 186243 - 186743 432 166 aa, chain + ## HITS:1 COG:lin1008 KEGG:ns NR:ns ## COG: lin1008 COG0517 # Protein_GI_number: 16800077 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 16 143 16 143 150 95 44.0 3e-20 MIDKPIETVMRQSKRDILIPADLVATVNEDNNLQHAFLVLTKVKYAKIPVLDNDNHFKGL ISLSMITEQMLLDTGITTRPLDSMKIKEIMQKDVPTIYERENLEVILRHLVNENFIPYVD HDNKFLGIITRRELFKEINFLAHNFSKRYVALPVYHEKTVSQSAAQ >gi|238617813|gb|GG669608.1| GENE 169 188391 - 189248 670 285 aa, chain - ## HITS:1 COG:SPy1897 KEGG:ns NR:ns ## COG: SPy1897 COG0668 # Protein_GI_number: 15675710 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Streptococcus pyogenes M1 GAS # 25 277 14 272 281 207 43.0 1e-53 MIFAINWQKYINFIDWQKLLVTISEKIGILVFFTILMLIFRKIGKSLINHFFKRYRKKYQ DTVTEKRIRTFHTLSINVLSYILWFFWLYSVLSTLGVPVGTLVASAGVFSLAIGLGAQGF VTDIVSGFFILLEKQIEVGEYVQINTIRGTITAVGLRTTQIVGDDGTLNFIPNRTITTIA NMSRNNMTAMIQVGILPETPIDKVIEVINQVNQQEVPKYSDIIGDPKIIGTINLPDGKLV VQVNITTKNGAQAEISHRFLASYLSELNKQGIQLPTSPVVLHKTQ >gi|238617813|gb|GG669608.1| GENE 170 189433 - 189849 389 138 aa, chain + ## HITS:1 COG:SPy0587 KEGG:ns NR:ns ## COG: SPy0587 COG4768 # Protein_GI_number: 15674673 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Streptococcus pyogenes M1 GAS # 6 129 6 129 135 79 41.0 2e-15 MTAGQIAGLIAAIAFLLLVIFIGMFLLKVSRTISEVNSSIRSMTSNVDVIAKQTDKIMAT SNTLVKDVDEKLNIVTPVFQAAADLGESVSDLNKATHNLTSKVKDTGKKGATAGIAGTVG RTAWNMFAKHRQAKKNRS >gi|238617813|gb|GG669608.1| GENE 171 189877 - 190380 544 167 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0941 NR:ns ## KEGG: Lbuc_0941 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 129 1 125 154 108 65.0 1e-22 MGKKLVGGLFAGLLGAGLYAAYQKMDETKKNRLKRDFREKTDELRDRAVDYAFYANDAVS DFKDAFKDELNSTKGNVKDASSSFADKAKSFKTAKDSDGTDVSAEEKADQDDIIVDARDA FNDSDYSKATESDTQNDANLSNTDKEKDNETEDHSNSQPNQDHSDNQ >gi|238617813|gb|GG669608.1| GENE 172 190455 - 191552 1001 365 aa, chain - ## HITS:1 COG:SPy0513 KEGG:ns NR:ns ## COG: SPy0513 COG0006 # Protein_GI_number: 15674617 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Streptococcus pyogenes M1 GAS # 1 364 1 359 361 358 50.0 9e-99 MDKIEKIQRWLSDNNRDIALISDPKTIQYLSGFYSDPNERVLLLVVFKNSDPFLFGPALE TQAIKESGWSNPVYGYLDHEKPWEMIADQIHARNTAETNFAIEKANMSVEWLELVKSEFP TGDFSVNLDQMLDQMRIIKSADEIEKLKIAGKWDDFAFKTCFEAVKAGRPESRVAAEMSY ALMKNGIMELSFPPLIQSGTHAAEPHGATSDKKIENNALVLFDLGTVWDGYISDATRTIA VGKPDDKSMDIYKVCLEAQLTAQEAAKPGITAEELDKVARDIITKAGYGDYFNHRLGHGM GMSEHEFPSIMEGNQLVLQPGMCFSIEPGIYIPNVAGVRIEDCIHITENGNEPFTHTTKE LQYFG >gi|238617813|gb|GG669608.1| GENE 173 191772 - 192773 920 333 aa, chain + ## HITS:1 COG:SP1999 KEGG:ns NR:ns ## COG: SP1999 COG1609 # Protein_GI_number: 15901822 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 5 333 6 333 336 382 63.0 1e-106 MDKQTITIYDVAREADVSMATVSRVVNGNANVKPATRKKVLDVIEKLDYRPNAVARGLAS KKTTTVGVIVPDVTNMYFSSLARGIDDVATMYKYNIILTNSDSNSEKEIKVLNTLLSKQV DGIVFMGNEITDKLREEFKRTKTPIVLAGSVDEQNLKPSVNIDYVAAVQEEVKNLIDRGN KRVAFVCGPLEQAINGKFRLEGYKKALKSAGIPYDDKLVFETDDTYKTGTLLQPALMSVN ATAAMVTDDELAAGIMNGMSDAGVKVPDKFEIITSNDTKLTEMVRPKMSSITQPLYDIGA VAMRLLTKLMNNEDVDEKNVLLPYGLMKRESTK >gi|238617813|gb|GG669608.1| GENE 174 192999 - 193733 767 244 aa, chain + ## HITS:1 COG:lin1570 KEGG:ns NR:ns ## COG: lin1570 COG0217 # Protein_GI_number: 16800638 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 238 1 238 241 266 55.0 3e-71 MSGHSKWHNIQGRKNAQDAKRGKIFQKISRDLYQAAKAGDPDPENNPQLRLVMEKARAAN MPKDNVQRAIDKASGLGGAKFEEITYEGYGPGGTAIMVSALTDNKNRTAAAIRSAFTHHG GSLGASGSVSYMFDRKGYIEVLRDGLDKSEDDMLMDALDAGADDMKTTDSEFQIFTDPSS LAAVRDELQKKGYDLDTAEVRMFPETTTEVPGDKISQYSGLIDELENNDDVQDVYEAAVL PENS >gi|238617813|gb|GG669608.1| GENE 175 193861 - 194832 552 323 aa, chain + ## HITS:1 COG:SPy0101 KEGG:ns NR:ns ## COG: SPy0101 COG2804 # Protein_GI_number: 15674324 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Streptococcus pyogenes M1 GAS # 18 269 17 267 312 219 45.0 6e-57 MEINEQVATLYNTAINYHASDIYFLPVNDQYVIKIRNSESLMDWKIMSAVRARRMMNYCK YMADMALSELRRPQIGSMDWQVADRQYSLRLSSVGDFSGAESMVVRIIYDLEEIKTAFFD LEALKKVRQMTSRRGLVIFSGPTGSGKTTTIYNLVNQTSAGKIVMTIEDPVEIKQPNYLQ LQVNREAGMAYSDLIKVGLRHRPDVFIVGEIRDELTAKAAIRAALSGHLVYSTIHAQSPR GVVDRLSQLGIDRPFISQALTAVCYQRLIPTIDGQQKVLLKTHTLQELMKTNTYDWEDWQ NGLEQAIVNQQITRKTAEQFWYG >gi|238617813|gb|GG669608.1| GENE 176 194762 - 195823 364 353 aa, chain + ## HITS:1 COG:SA1373 KEGG:ns NR:ns ## COG: SA1373 COG1459 # Protein_GI_number: 15927123 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Staphylococcus aureus N315 # 29 352 21 355 356 105 25.0 1e-22 MVLSRQLLINKLLEKLPNNFGTVKRWPIAVQADFFSTLANLLKIGFSLTAALKFICETDQ HLKSGTKQIIDGLETGSDFSKCVQPLISSQAYQQILISEKHGQLRDVLNELATFNRLKLK QIKKIKTVMIYPAFLCIILLTLIIVIHTFVFPQIETLLPSVSTAQPELIDFHLLEVIGLA IGTILIILTIGFFKQPVLKKAEIVVKIPFLGSIFKRYIAYYLASNLATLLRNGLSVKEIY SVLCAQKTDSIIYALGEMLNTSLTKGNSLKKIVETHHFIPKEIVKFLNSGDTVTEMANSM TAYSKLMFDEILLATDKLIAFIQPTMFLMIGVTIVATYFQLLIPIYDSVKGLY >gi|238617813|gb|GG669608.1| GENE 177 195847 - 196149 198 100 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0947 NR:ns ## KEGG: Lbuc_0947 # Name: not_defined # Def: competence protein ComGC # Organism: L.buchneri # Pathway: not_defined # 4 98 7 101 104 92 68.0 4e-18 MTNQTRSGFTLIEMTIVLFIISLLIMIVIPNLSNQRKRAQTVHTSAMQSMVQAQVDAYQS QHPDDEHVSYDDLSKDGYLTKKQVSQARHEGIKISKNDDR >gi|238617813|gb|GG669608.1| GENE 178 196136 - 196576 296 146 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0948 NR:ns ## KEGG: Lbuc_0948 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 5 144 6 149 151 86 35.0 4e-16 MMTGRKGFTVLELIIYLGIVSCVLLINLVLISFIKGNHIENRLFWHSFQECWTQAQQTAR VNHCKYEVMIETKPQQVVFKPYHQKIKKQVLKCPNGLVPHNARHLFINSNGYASPTTIYW QSKSGKEIYLQKIQLGWSGFRIEKKN >gi|238617813|gb|GG669608.1| GENE 179 196735 - 197160 295 141 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0950 NR:ns ## KEGG: Lbuc_0950 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 6 137 13 144 147 142 49.0 5e-33 MSRKHRHGYLLAESMISLLVCVFAIWTITTMLVYVGRASNNQLINFYSYIDLLESDHFNF RVVKVSNNDVILYSPNTKKKYHMQQYKNMLRFTGDHLGHVPTLVNVGRVYWDKEEGRLNT DVKFENGEHYQAYSKLPSDRQ >gi|238617813|gb|GG669608.1| GENE 180 197096 - 197365 128 89 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227524364|ref|ZP_03954413.1| ## NR: gi|227524364|ref|ZP_03954413.1| hypothetical protein HMPREF0519_2073 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0519_2073 [Lactobacillus hilgardii ATCC 8290] # 18 89 1 72 72 105 93.0 9e-22 MLSLKMVNIIKRILNCRVIASNHQNGSLTVVALVFISMMLACLIFQCVSYQRNISTIESM TQTYRQRQRKLLSRQKESVPVQQFTIANH >gi|238617813|gb|GG669608.1| GENE 181 197449 - 198462 759 337 aa, chain + ## HITS:1 COG:lin1617 KEGG:ns NR:ns ## COG: lin1617 COG0827 # Protein_GI_number: 16800685 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Listeria innocua # 10 333 7 330 332 220 36.0 4e-57 MSVLTEGQIERFFSVLNETTEIVQKQKDQSYFDSLIEVLDTVQSNDVNALDLTDENAKKV SRIYSEFDRDKYDSETLRKAIQMAILKAIRVDRIQANYQITPDTIANIVGYIISGIFNGQ KQLSMLDPAMGTGNLLTAIYNQLDKSIHVKPSISGIENDDAMFELAAGSFDIQHIHAELF HEDAIQNVLAPVVDIAVSDLPVGYYPIDENTKGFNTRSNDGHSYVHHLLIEFAMDHVKKG GYGFFLVPSQIFKTSEAKQLLKWMQGNVYLQGLLNLPTELFQNKASQKAIMILQNSGGNA KQASPIMLGEFPSFKDQPAFQKFLTEIDDWQKKDLLQ >gi|238617813|gb|GG669608.1| GENE 182 198485 - 199675 1251 396 aa, chain + ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 1 396 1 395 395 439 53.0 1e-123 MGKSIAINAGSSTLKYKLFQMPEETVLSSGAIDRIGLGSSSVSIKYDDGKKYKDTLDIDN HEQAIQLVLDKLLSLNIIKDYSEITGVGHRIVAGGEDFKDSVIIDDDVIKKIEGLTEFAP LHEPAAILGIKAFKKILPNIISIAVFDTSFHTTLPEVNYMYSLPYEYYQNYKVRKYGAHG TSYRYVSQRAASILGKPLEDLKLVILHLGAGASIDAIKDGKSFDTSMGFSPVAGITMATR SGDVDPSALQYVMGKAGIKNMDDMVDILNHKSGLVGVSGVSADMREIEGVMHENHRAMLA REIFKNRIIRYIGSYVAEMGGIDALVFTAGIGENDIMIRQEVSDKLGYFGIKVDPKKNDI RGEERDLSAEGSTVKTLLIPTDEELMIVRDIERLRK >gi|238617813|gb|GG669608.1| GENE 183 199862 - 201238 895 458 aa, chain + ## HITS:1 COG:BS_ydgF KEGG:ns NR:ns ## COG: BS_ydgF COG1113 # Protein_GI_number: 16077629 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Bacillus subtilis # 1 446 5 448 458 457 53.0 1e-128 MESQNDDHQFSRGLKNRHVQLIALGGTIGTGLFLGAGQSIHLAGPSIILAYLLAGFACFL LMRALGELLLSDLSGNSFVFFIKKYLGDKAGFVIGWTYWTCWISIAMADLTATGLYVQFW FPKIPVWLTGLVVLTILFLVNIIAVSAFGETEFWLSIIKIAAIVALIIIGIVLVLVHYKT PFGHAELSNIVSGGFFANGSSGFVLSFQMVLFGFAGIEMIGMTASETQDPEVTIPKSINE VPTRVLLFYVGSLLALMSIFPWQHVSPTSSPFVQVFSGIGIRSAATIINFVVLTASISAC NSSIFTTGRMMFSLTYSGKSKFHKTVGKLSRRQIPFNAILFSTCVIALIVVLSILMPGNV FSFISSVTTTCFLFVWGMIVLAHLRYRKVIKAGRHSDKLTFKMPLYPFSDYFVLAFLIFV GIVLLLKTDTLIALIGSLLWLLILFVGKSVTNKVESEN >gi|238617813|gb|GG669608.1| GENE 184 201378 - 201986 426 202 aa, chain + ## HITS:1 COG:SMb20398 KEGG:ns NR:ns ## COG: SMb20398 COG4186 # Protein_GI_number: 16264132 # Func_class: R General function prediction only # Function: Predicted phosphoesterase or phosphohydrolase # Organism: Sinorhizobium meliloti # 1 165 1 146 164 72 33.0 4e-13 MQFFTADTHFFHERLLGISEFAPRPFLTVEDMNDTIIENWNRRVGKDDVVYHLGDIAILH TRPEKDAYQRIFEVLKKLNGRLILIKGNHDSRNLFKYLEKHNYLVGNHLKFEFHDVGVLI KMNHRQYYMTHYPMMMGIVKQIINLHGHIHHYSVPIKENINVGVDTPEADYLKHKPPFGT PFSQQEIEEMVAQKQIDFAKRQ >gi|238617813|gb|GG669608.1| GENE 185 201998 - 203389 886 463 aa, chain + ## HITS:1 COG:lin2502 KEGG:ns NR:ns ## COG: lin2502 COG0737 # Protein_GI_number: 16801564 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Listeria innocua # 1 459 1 457 463 305 35.0 1e-82 MTEKITILHTNDLHSHFENWPRIRRYILETRNKLLLEKNSSVITVDLGDAVDRVHPLTEV TNGQANVELLNQIHYDAVTIGNNEGLTNTHEQLNQLYNDANFDVILGNILDMKTKLMPKW SQPAKIITTPKKTRILILGLTAPYLLTYPILGWRPIEPEKILPKLLKRYAGQYDIVVLLS HLGLPEDQLLARKFPELNVIIGSHTHHLLVHGQRVNTSLLAAAEKWGHYIGQITLTVDHS HQITDSDAMVVKTSTLPELPEDQEEIEGYEETGEKLLARNKLARIKAPMTTSLTGNSRLV NEGLHAIMEKANTSAGILSSGLFLRDLPKGIVDRNELHQMLPHAMHVMRVTLGGYDLWRL IKEMEKNRNFLIKFPQKGMGFRGKVFGELHYSGLRYDSDTGRLFYREELVSPIKKYQIAM PDHYLFIPFFPTLEIVGHNEILYDENLRDVFGDYMAKHYPING >gi|238617813|gb|GG669608.1| GENE 186 203403 - 203975 432 190 aa, chain + ## HITS:1 COG:BH3433 KEGG:ns NR:ns ## COG: BH3433 COG4470 # Protein_GI_number: 15615995 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 33 118 4 90 93 85 49.0 8e-17 MDRKQLDVLIAQQDEKRHPLAQIQRDSETEFSINNHQYEVELNSQNGFQFEEFVRRYNPA LSQFDFIVGDWGYGQLRLKGFYNDDREVVTGPFISALNDYLLEDINFGAAYFVVHNLEAR PIVHKSRSTRSRHRSSRGRSRNNRRNSRNHAFVEQKVAPVKPPLQKRKNLIVKTEEKSHK HHFIIRESKN >gi|238617813|gb|GG669608.1| GENE 187 203995 - 204768 698 257 aa, chain + ## HITS:1 COG:L156445 KEGG:ns NR:ns ## COG: L156445 COG0647 # Protein_GI_number: 15673125 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Lactococcus lactis # 2 255 4 255 257 261 51.0 8e-70 MKHYKGYFIDLDGTVYAGKKRIPAAKRFIERLQAKKIPFLFVTNNSTQLPRDVVKNLDEN HDIHVKPENVYTSGMATVDFMNDDKKIVAPSVYIVGEIGLKQVILANNFRLESDHPDYVV VGLDSDLTYEKLSEAVLAIRSGSKFIGTNPDTNIPKERGMMPGAGSVVKFVEYATQQQPI MIGKPKARIIESALKKIGLSQDEVVMVGDNYNTDIKAGINANVDTLLVYTGLSTKEQVRS ESILPTYQIDSLDEWRP >gi|238617813|gb|GG669608.1| GENE 188 204782 - 205435 180 217 aa, chain + ## HITS:1 COG:SPy1044 KEGG:ns NR:ns ## COG: SPy1044 COG4478 # Protein_GI_number: 15675040 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 15 194 15 196 210 92 36.0 4e-19 MQQIGYALIILLGCLSFAIFLTINSVWLFDLNIHALHLSAATGMSAERMHEEYLRMINYI QNPLTNSLNFKYFISSPNGLQHFKDVRHLVIFNNVMAVIFVPVSFVLVRRLNKKSLTWML LTPIKTVVIFSLVIVSIMIVNFEQVFIYFHELLFRNSDWIFDPDLDPVINMLPDTFFFEC FTLFFIVFLALHLWLYILAKKSLRSDPPLKSTRSGKQ >gi|238617813|gb|GG669608.1| GENE 189 205389 - 205577 294 62 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0959 NR:ns ## KEGG: Lbuc_0959 # Name: not_defined # Def: phage shock protein C, PspC # Organism: L.buchneri # Pathway: not_defined # 1 61 1 61 62 86 68.0 4e-16 MKIHIHRSKEHRVIAGVIGGLSEKYDWDPLLARIVFLLLAFTPLFPGFIAYLILWILMED PI >gi|238617813|gb|GG669608.1| GENE 190 205696 - 205947 252 83 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0960 NR:ns ## KEGG: Lbuc_0960 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 80 1 80 83 106 70.0 4e-22 MLTLNINANLGNQEVVLSDNSYGQLSGIRVFGSPTGGSQVIQWTFTSTGHKHEGFVFAGN LTEGLVIDSITGKDQYKIHFVIE >gi|238617813|gb|GG669608.1| GENE 191 206056 - 207246 708 396 aa, chain + ## HITS:1 COG:lin1454 KEGG:ns NR:ns ## COG: lin1454 COG3425 # Protein_GI_number: 16800522 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Listeria innocua # 1 386 1 388 388 397 51.0 1e-110 MTVGIDKIGFYTSPYFIDMVDLAHARNEDPRKYLIGIGQKKQAVIPSTQDVVTMAANAAQ KILSEGDKEKIDLVIFGTETGIDNSKSAAIYVQSLLGISKQARSFEIKQACYGGTAGVQM AVDHIRLHPESKALVLAADIARYGLNTPGEVTQGGGAVAMVISSNPRILEVEDKRSFHSD NIMDFWRPLYRHDAVVDGHYSNSIYVDFFQQTWTDYRQKYHRTIDDFRALTFHLPYTKMG LKALRSIIDQSKHPEAILEQFEASRMYNALVGNLYTGSLYLSLISLLSNSEALNQDDLIG LFSYGSGAQGEFYSGRLSDQFDRSQLKTDMDTILSERSRITIEQYQEMYQTFLPLNEEDK LFDVSSDNSCFVLKGRKENRRIYLTKNGSGDDQSLD >gi|238617813|gb|GG669608.1| GENE 192 207375 - 208004 552 209 aa, chain - ## HITS:1 COG:lin1340 KEGG:ns NR:ns ## COG: lin1340 COG1974 # Protein_GI_number: 16800408 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Listeria innocua # 8 206 6 202 204 242 59.0 3e-64 MAKNSESKQYKILHYIWEKVNDKGYPPTVREIGEAVNLSSTSTVHGHINRLQKKGYIVKD PSKPRALEVTAAGMELLGIAPKQKQIPILGTVTAGEPILAVEDATDYFPLPPQLAQDDQT LFMLQIRGESMINAGILNGDYVVVRKQAYADNGDIVIAMTDENEATCKRFFKESDHFRLQ PENDTMAPIILTKVSILGKVVSLYRNDID >gi|238617813|gb|GG669608.1| GENE 193 208131 - 208415 360 94 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0963 NR:ns ## KEGG: Lbuc_0963 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 94 1 94 94 105 79.0 8e-22 MNEKEKKELQSKIGDNVLKEIVPRINELAHKAKNEGLTEVEKIERAELRKKYVARFRENF KSQIELMKVYDKSGKEITSKKVKNIQRHKGLRDD >gi|238617813|gb|GG669608.1| GENE 194 208517 - 208741 145 74 aa, chain + ## HITS:1 COG:SA1178 KEGG:ns NR:ns ## COG: SA1178 COG3763 # Protein_GI_number: 15926924 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 71 1 71 80 75 64.0 2e-14 MATWIWILIVIVALVIGLIGGFYGARKYMEKYLKENPPFNEDQLRQLMLQMGQKPSQKKL NQMMHTMQSNMGKK >gi|238617813|gb|GG669608.1| GENE 195 208829 - 209479 409 216 aa, chain - ## HITS:1 COG:SP1624 KEGG:ns NR:ns ## COG: SP1624 COG0204 # Protein_GI_number: 15901460 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 3 194 1 194 249 204 50.0 7e-53 MGLFYSFVRVLVRIFVFIINGNAHYQYKERLPKGNYILVGPHRTWFDPIYFALAASPKKF SFMAKKELFKNPILKWILDHANAFPVDRDHPGPSAIKKPVRILKKSDLSLILFPSGTRHS EQLKSGAALISQLANVPLVPTVYQGPLSFKRLFSRKKVTIAFGEPIYIDRKHKLDDNYQK EVEQQMQTAFDALDYAVNPDFKYVDISKKNTTDKIE >gi|238617813|gb|GG669608.1| GENE 196 209563 - 210315 503 250 aa, chain + ## HITS:1 COG:SPy1411 KEGG:ns NR:ns ## COG: SPy1411 COG4123 # Protein_GI_number: 15675331 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 247 2 247 258 240 48.0 1e-63 MRVKLKKNERIDQLYSNNVSIIQSNDVFSFSLDAVLLAEFAQVGSKRVKNIIDLCSGNGA VGLFLSSETSAQITMVEIQEKLADMAARSIQLNHLENQVHVVNDDLKNTTHYISKDSVDV IVCNPPYFVNYETSEKNPNQYLAIARHEIKTTIDEITKISADLLKTNAKLFVVYRPDRLT DLLLSLRNHHLEPKILQFVRSKTTSEANMVLVEAIKSGKPNGLRIQEDLITHEGNDYSDK VKRILYGETN >gi|238617813|gb|GG669608.1| GENE 197 210299 - 210571 228 90 aa, chain + ## HITS:1 COG:L1889726 KEGG:ns NR:ns ## COG: L1889726 COG2827 # Protein_GI_number: 15673803 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease containing a URI domain # Organism: Lactococcus lactis # 5 85 1 82 104 79 50.0 1e-15 MGKQIKKYYIYVLLCEDRTLYTGFTTNVEKRFQTHKLGRGAKYTRSHRPIKILFQKQFPT KHDALSAEYAFKQLTRKQKLQYINNPDSFL >gi|238617813|gb|GG669608.1| GENE 198 210667 - 211665 953 332 aa, chain + ## HITS:1 COG:TP0037 KEGG:ns NR:ns ## COG: TP0037 COG1052 # Protein_GI_number: 15639031 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Treponema pallidum # 1 321 1 320 331 247 41.0 2e-65 MKIIAYGIRDDEKPYLDKWSEENPDVEVASTGELLDESTVDQAKGADGVVTYQQKPYTAA VLDKLGEFGIKFLSLRNVGVDNIDADAAKRNGIQVTNVPAYSPEAIAEFTVTQLMRLLRR TNTFDRKQANGDLRWAPDIAEELNQLTVGVFATGRIGRAAMRIYKGFGAKVIAYDIFHNP ELEKEGVYVDSPDELYAQSDVLSIHAPATKENEHMLNDEAFSKMKDGVYILNPARGALVD TDALIRALDSGKVAGAALDVYENEVGIFNTDFGSFDKIPDERLKGLMKRENVLVSPHIAF YTKRAVRNMVYFAMDANKSLISTGKSDKLVKL >gi|238617813|gb|GG669608.1| GENE 199 211774 - 212499 479 241 aa, chain - ## HITS:1 COG:SPy0596 KEGG:ns NR:ns ## COG: SPy0596 COG1011 # Protein_GI_number: 15674680 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Streptococcus pyogenes M1 GAS # 1 230 1 228 300 112 31.0 8e-25 MIKAIVFDVDDTLYDQKPSFNEAFKQIFSNDVDSNLINKIFSNYVQQEQLVVAKNNLDNQ FQLSKTDISFHCLHHSFKEFNLDGLTQKKAEDFWQLYSKFSQDIQLFDGLTHVFNKLIEK FKLGIITNGSTENQLSKITRLNLQHWFDRESIITSEDANAKKPDPMIFTLMNRKFELRGN EMMYVGSSYLNDIVPAKRAGWQTVWYNNHDGSIIDPNIIPDQTVNNSEQLQELLLELAAE V >gi|238617813|gb|GG669608.1| GENE 200 212741 - 213547 1365 268 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227510241|ref|ZP_03940290.1| ribosomal protein S2 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 268 1 268 268 530 100 1e-149 MAVISMKQLLEAGVHFGHQTRRWNPKMKQYIFTERNGIYIIDLQKTVKLIDVAYNFMKEE ASKGAVVLFVGTKKQAQDSIAEEATRAGQYYVNNRWLGGTLTNWNTIQSRVKRLKDLKKM ATDGTFDVLPKKEVSLLMKQRDKLERFLGGIEDMPKLPDVLFIVDPRKEQIAVHEAQKLN IPIVAMVDTNTDPDQIDVVIPSNDDAIRAVRLITSTMANAIIEGRQGEDEVNEDTFENGS KTDKKDSKEDSIEDIANAVEGKSDTDNK >gi|238617813|gb|GG669608.1| GENE 201 213636 - 214514 551 292 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 291 1 280 283 216 44 1e-54 MAKISASQVMQLRKKTGVGMMDAKKALVATEGDFDKAIEVLREKGVAKAEKKSDRVAANG LATVAVKDNTAAIIEVNSETDFVASSDPFKAAVSRISDAIVANKPADVDAALALSTEKGT IKDDLVETTQVTGEKVSLRRFEIVEKNDDQVFGSYLHNGGLIASLVELKGADEATAKDVA MHVAATNPEYLNQSEVPAERLAHEKEILTQEALNEGKPEKIVEKMVEGRLHKFLAEICLE DQEFVKDPDQTVAQYVASKNGSIVKFVRYEVGEGIEKKQESFEDEVRNQLGN >gi|238617813|gb|GG669608.1| GENE 202 214730 - 215452 731 240 aa, chain + ## HITS:1 COG:lin1350 KEGG:ns NR:ns ## COG: lin1350 COG0528 # Protein_GI_number: 16800418 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Listeria innocua # 1 240 1 241 242 322 67.0 4e-88 MSKVKYNRIILKLSGEALAGDRGFGINPPVIKDVAKEIKDIFEMGVQIGIVVGGGNMWRG EAGAEMGMERAQADYIGMLGTTMNGLALQDNLESLDVPTRVQTSIEMRQIAEPYIRRKAV RHLEKGRVVIFAGGTGNPYFSTDTTAALRAAEIGADAILMAKNGVDGIYTADPRTHKDAK KYETLTYMDILEKGLKVMDSTASSLSMDNHIPLVVFNLNKPGNIRKVVSGDSIGTTVKEK >gi|238617813|gb|GG669608.1| GENE 203 215455 - 216018 594 187 aa, chain + ## HITS:1 COG:L0367 KEGG:ns NR:ns ## COG: L0367 COG0233 # Protein_GI_number: 15673991 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Lactococcus lactis # 7 186 5 184 185 187 55.0 1e-47 MADTQTVLNEAKTKMKKAQEVLEHELGSIRAGRANASLLSGVTVDYYGAPTPLNQIASIS IPEARVILITPYDKSSLDNIEKGIYEADLGLSPANDGTAIRLAIPALTEERRKEVAKQVK ATGEKSKVAVRNVRREAMDTFKRGNKSEEITDDELHRLEDQVQKLTDNSIKSVDKIVADK ENEVMNG >gi|238617813|gb|GG669608.1| GENE 204 216034 - 216477 390 147 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0976 NR:ns ## KEGG: Lbuc_0976 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 11 147 16 152 152 219 83.0 2e-56 MADNNNNNNDEVSVVPGTPEFDKMLFKLNKPVTEDNLGDLDYNGSRLQPVQDDLYAMPAF VTDDFNLFFIVSQLVEEDWVIAFSNATIEKGHEITDLSEPMTTGKGLNELGQKSPSDANQ LLKYFNTLAEANRGEWRMVERPDSAED >gi|238617813|gb|GG669608.1| GENE 205 216552 - 216689 69 45 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227513175|ref|ZP_03943224.1| ## NR: gi|227513175|ref|ZP_03943224.1| di-trans-poly-cis-decaprenylcistransferase (undecaprenyl diphosphate synthetase) [Lactobacillus buchneri ATCC 11577] di-trans-poly-cis-decaprenylcistransferase (undecaprenyl diphosphate synthetase) [Lactobacillus hilgardii ATCC 8290] di-trans-poly-cis-decaprenylcistransferase (undecaprenyl diphosphate synthetase) [Lactobacillus buchneri ATCC 11577] di-trans-poly-cis-decaprenylcistransferase (undecaprenyl diphosphate synthetase) [Lactobacillus hilgardii ATCC 8290] # 1 37 1 37 254 77 97.0 4e-13 MFNNKKNAKSSIHLDSDRIPKHIAIIMDGNGRWAKKRTFATNRRP >gi|238617813|gb|GG669608.1| GENE 206 216634 - 217317 395 227 aa, chain + ## HITS:1 COG:lin1352 KEGG:ns NR:ns ## COG: lin1352 COG0020 # Protein_GI_number: 16800420 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Listeria innocua # 8 224 39 252 252 265 58.0 6e-71 MVMGVGQKKEHLPRIAGHRQGMETVKTVTMAASKLGVKVLTLYAFSTENWKRPKDEVSFL MGLPVKFFNNFVPELIENNVKVSVMGLIDQLPENTQKAVRDAISQTSKCTGMILNFALNY GSRLDIRLAVQNIASEIKNDAISISDIDDDLISRHLMTGFLGDYADPDLLIRTSGEERIS NFLLWQIAYSELVFTDALWPDFDGQTLRQMIFEYQHRNRRFGGLKNE >gi|238617813|gb|GG669608.1| GENE 207 217334 - 218122 464 262 aa, chain + ## HITS:1 COG:lin1353 KEGG:ns NR:ns ## COG: lin1353 COG0575 # Protein_GI_number: 16800421 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Listeria innocua # 1 262 1 262 262 216 49.0 4e-56 MKQRVITAVVALIIFIPIIILGGLWIDIAALVLGIVAVSEILVMKKRILVSGESIIAYLG VSALILPDSWTGFLPNNFNQTFIFFLFVLMLLLVTVLSRNLFTFDDAGVIVLGMLYIGMG FHYFIAARAESLPVLLYALFIVWVTDSGAYIFGRLFGKHKLAPRISPNKTWEGSICGSIA ATILCSTFIFFYPIPGYSMIEMIMITIFLSIAGQFGDLIESALKRYYDVKDSGKILPGHG GILDRFDSLLLVLPMLHLVGII >gi|238617813|gb|GG669608.1| GENE 208 218223 - 219422 813 399 aa, chain + ## HITS:1 COG:lin1355 KEGG:ns NR:ns ## COG: lin1355 COG0750 # Protein_GI_number: 16800423 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Listeria innocua # 2 398 26 420 420 362 46.0 1e-100 MAKRSGILVREFSVGMGPKVFFHRSGSTTFTLRLLPLGGYVRMAGEVDDGEEELKPGTPV TLQLNDQGVVTRINTSNKHSLFQGIPLTVTGTDLAHDLYIKGYENGDESDVKKYPVDHDA IIIESDGTELQIAPEDVQFQAAPLGKRMLTNFAGVFNNFILAILVYTILGFVQGGVQSNT NKINVMPSDSVARQAGVKSGDRILSINGHKTADWDQLAVQIQSNPGKKVTAEISRDGQNK SIQMTPKSNTQGGKKIGMIGITQSLDTSFKAKVLSGFTQTWTMTKTLLGALWSMVSGHFS LNDLGGPVAIFATTSQAASLGISGVLNFLAWLSLNLAIINLIPIPGLDGGKLVLNIIEAI RRKPVSQRTETVVTLIGFAFLMILMILVTWNDIERYFLH >gi|238617813|gb|GG669608.1| GENE 209 219490 - 221199 1412 569 aa, chain + ## HITS:1 COG:lin1356 KEGG:ns NR:ns ## COG: lin1356 COG0442 # Protein_GI_number: 16800424 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Listeria innocua # 1 565 1 565 568 660 56.0 0 MKQSKILVPTLKETPKGAEALSHKMLVRAGYIKQISAGMYAYLPLAYRVLTKIETIVRQE MEKTSAHEMLMPDVLPAELWKESGRYETYGPELFKFKNRHDTDFILGPTHEETFTELIRD SIKSYKQLPLVLYQIQNKYRDEDRPRYGLLRSREFIMKDAYSFAANEADLDDAYRAMEKA YRTIFDRIGLKYRVIIGDGGAMGGSDSKEFSAMAAVGEDTIVYSDESDYFANLEMAKSKA TDEPSTEAEADLKKVATPNVKSIDEVADFLGVSTKKTIKSMLYIADEKPVLVLVRGDYDV NDVKLKNYLKADFLDLATDEQAVKFLKADFGSLGPVGVSDDVRILADTRVGNMKNAVVGA DEDGYHYVNANLNRDFRIDAVDDFVVVKEGELSPDGKGKLKFTRGIEIGHIFKLGTRYSK SLNANVLDENGRSIPVIMGSYGIGISRLLSAISEQNADENGLVWPVAVAPYTVHVIPINV KKEVQMNLANQIEEQLTENGIEVLVDDRKERPGVKFADSDLLGIPLRITVGKKADEGIVE IKIRKNGETVESKVEELSDTVKILLKNLN >gi|238617813|gb|GG669608.1| GENE 210 221315 - 225637 2843 1440 aa, chain + ## HITS:1 COG:lin1357 KEGG:ns NR:ns ## COG: lin1357 COG2176 # Protein_GI_number: 16800425 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Listeria innocua # 9 1437 12 1444 1444 1717 58.0 0 MSLDQNALFEKLLEQLQWEEAKSSPFFQGAKIDRLEVHEQSLRWQFDVSVPRILPFEVFN DFNARLQSSFQEIAKVSLNITPANDHFNEQLLRQYWQWIVVNSGVTSPLIQELCEDRAPS IVDSRVEFMAENEIVKNFMTNTALGPIEEMYQKAGFPNFTIHTIVDETSSQKNIEALKKK NEVQNAELVKKANAAIKENAKKRANHPGATSGSAIIGKKISGDAPIMKMEDIIEEERSAV VSGYVFNKEVRSLRSGRQLLMLKITDYTSSIQVKKFSNRGEEALFDEINEGDWVKVRGSI QEDNYSHELTLNAYDINPVKKISRKDTAPEGEKRVELHLHTSMSQMDATNNIADYAKQAK AWGHPALAITDHAAVQGFPDAFHAGQKNDLKMLYGVEINLVDDGVPITYNDKHIPLKDAT YVVFDTETTGLSAIYDRVIELSAVKMKNSNVIDQFEEFIDPGFHLSEQTTNLTSITDEMV HGSKSEEEVFKLFRDFCEDAIVVGHNVTFDIGFMNTGYVRHGMPEIKNPIIDTLTLARFL YPNMRGYRLNTLAKKFDVNLEHHHRAIYDAETTGHLNYLFLKDAEDRYGIVYHDELNDHM TENDAYKHARPSHAVIIAKNQVGLKNMFKIVSLSNVDYFFRVPRVPRTQLEKFREGIIVG SACSSGEVFTAMMQKGMDEARKKAGFYDYLEVQPKRAYAPLIESHLISDEANLEEILTNI VKLGDELKKPVVATGDVHYLNPQDYIYRKILINSQGGANPLNRQELPDLHFLTTNEMLDD FAFLGAEKAKEIVVTNTNRIADDIDDVHPLKDRLYTPKMEGSEDEIKERTMTTAHQWYGD PLPKIVDDRLTTELKSIIGNGFSVIYLIAQRLVAKSNKDGYLVGSRGSVGSSLVATLTGI TEVNPLPPHYRCPNCQHTEFFTKGEYSSGYDLPRKKCPECGTQMIGDGHNIPFETFLGFT GNKVPDIDLNFSGDYQPIAHNYTKVLFGEKNVFRAGTIGTVADKTAYGYVKAYERDKGTT YRQAEEDRLAKGATGVKRTTGQHPAGIIVVPADMDIYDFTPIQYPADDQTAAWKTTHFDF HSIHDNILKIDILGHDDPTMIRMLQDLSGINPKSIPMDDPGVMSIFSSPKILGVSEEQIQ SKTGTLGVPEFGTRFVRGMLEQTHPSNYSELLQISGLSHGTDVWLGNADELIKNGTATIA NVIGCRDNIMTDLIQWGLDSELSFQIMESVRHGRGIPDDWQEEMRKAKIPEWYIDSCLKI KYMFPRAHAAAYILMALRIAYFKVYFPLIYYAAYFSVRADDFDIVSMCRGKDAVKNAMKQ INDKGMEASTKEKNLLTVLELANEMLERGYVFKMVDLKKSAANQWLIDGNNLIAPFNSVP GLGLNVAKQIVAAREDKPFISKEDLSKRGKVSKTLIDFMTENHVLDGLPDENQLSLFDMM >gi|238617813|gb|GG669608.1| GENE 211 225834 - 226307 256 157 aa, chain + ## HITS:1 COG:lin1358 KEGG:ns NR:ns ## COG: lin1358 COG0779 # Protein_GI_number: 16800426 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 157 1 155 155 150 47.0 8e-37 MSNVVETVKQVVKPILDKHTFYLFDVEFVKENKSWYLRVYIDKKGGITIDDCVLVSDELS EKLDEMDPDPIPQQYFLEVSSPGAERPLRNDEELQQAVGEYIHISLYQNLNGQKAFEGFL RSVTSDELVLQNDKWGKNDTINIPRNLIAKSRLAIQF >gi|238617813|gb|GG669608.1| GENE 212 226325 - 227659 795 444 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 416 9 420 537 310 43 6e-83 MSKELLGALSALEEEKGIKKEVVIEAMQAALVSAYKRNYGQAQNVEVSFDGTKGEMHVYS VKTVVETVTDDQMQVSLDDALQINKGYEIGDDIKFEVTPKNFGRIAAQTAKQVIMQRVRE AERENIFDEYSKYEDDLVTGTVERQDTRFVYINLDKVEAVMGPRDQMPNEVYRPQERIKV YVTRVENATKGPQVFVSRTDPGMLKRLFEQEVPEIYDGTVEIVSIAREAGDRAKVAVRSN NSDIDPVGTAVGPKGQRVQTIVNELHGENMDIVEWDEDDARYIANALNPAEVIDVIFDDD NDRACTVIVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETEAKEFLAERKQKAQQVEN EDEGTTDESETAEPDQETSDDTLGESVDTDSQEVQTESDEDVEADAQDDQSDNVEKQSEH IDDADSSDHTEDTSSDENPSSNQD >gi|238617813|gb|GG669608.1| GENE 213 227679 - 227978 343 99 aa, chain + ## HITS:1 COG:L175136 KEGG:ns NR:ns ## COG: L175136 COG2740 # Protein_GI_number: 15672747 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Lactococcus lactis # 1 94 1 94 108 91 52.0 3e-19 MKKRKIPMRKDIVTGEMAPKKELVRIVRDSEGNVSIDETGKKSGRGAYISINVDIAKKAK EEHVFEKVFSTQIDGDFYDDLIAYVDHKQARKELFENGK >gi|238617813|gb|GG669608.1| GENE 214 227968 - 228285 525 105 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227510254|ref|ZP_03940303.1| 50S ribosomal protein L7AE [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 105 1 105 105 206 100 1e-51 MENNQAILNFLGIAKRANKIVSGENTLLSEIRNGKVHFLFIASDTGPSTSKKFLDKSNYY HVSVNTMYTKEVLSNAIGMKRTIIGIKDQGISKKMIELTNRIKGE >gi|238617813|gb|GG669608.1| GENE 215 228290 - 230806 2414 838 aa, chain + ## HITS:1 COG:lin1362 KEGG:ns NR:ns ## COG: lin1362 COG0532 # Protein_GI_number: 16800430 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Listeria innocua # 1 838 1 782 782 747 52.0 0 MGKKRIYELAKELNISSKKIIDEASKRGVAVKNHMSTVDANQEKQIRQLFKKNGTSDRTQ NSQSSHSSVSNGRHTTQSDRHSHNAQQGQRSERSNQTNHSQGESRSQRANNHSENKNSSS QGKRETTHNSAGTNRQSSQNNHSNNRSRTQRNNDSGTRSNNTQSRTNNTAHTSSATNTSN SNSTSRQSRPSTNNANHRNTGSGRFGGSLNRRNNSGGSRKANKKRNKKQRKQQNQRLRQV EHHGAPERKARPLPTVLEYEDGMNAQDLGKIMHREPAEIVKKLFMLGVMVNQNQSLDKDT IEILAADYGIEAKEKIHEDLSNLDEIFEKEMKNAKHLVSRPPVVTIMGHVDHGKTTLLDH LRHSHITAGEAGGITQAIGAYQVRHGDNIITFLDTPGHAAFTEMRARGANITDITVLVVA ADDGVMPQTIEAINHARAAETPIIVAINKIDKPDANPEHVTEQLSKYNLIPEDWGGDTIF VDISAKFGKNIDELLDMIILESEMLELKADPDQPAVGSVIEARLDQGQGPVATLLVQQGT LKVGDPIVVGNTFGRVRTMTNERGRDLKKVTPSMPVSITGLNDVPEAGDRFVVFSDEKTA RSVGEERAEEAQIQERRKTNRVTLDNLFDSLEEGEMKEVDIVIKADVQGSVEALANSLKK IEVKGVKVNIIHSGVGAINESDVALAEASNAIIIGFNVRPTPQAKSQADSDHVDIRLHQV IYNAIDEVESAMKGMLAPTYKEEVTGEVEVREIYKASKVGTIAGGMVVDGVVNKDSKVRL IRDGVVVYTGELNSLKRFKDDVNQVKQGFELGLTIKDYNDIKVGDVIEAYIMKEVPVK >gi|238617813|gb|GG669608.1| GENE 216 230874 - 231224 445 116 aa, chain + ## HITS:1 COG:SPy1719 KEGG:ns NR:ns ## COG: SPy1719 COG0858 # Protein_GI_number: 15675570 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Streptococcus pyogenes M1 GAS # 1 112 3 114 118 117 55.0 7e-27 MAHYRVGRLEQEIQREVNDILLKRVRDPRVQGVTLTGVEVTGDLQQATIYYSILSDDKAD EETTAKGLEKATGLIRGELGSRLSIYKTPEIKFELDTSVQYGDKIDRLINKLKRED >gi|238617813|gb|GG669608.1| GENE 217 231321 - 232232 589 303 aa, chain + ## HITS:1 COG:lin1365 KEGG:ns NR:ns ## COG: lin1365 COG0130 # Protein_GI_number: 16800433 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Listeria innocua # 1 298 1 298 304 253 46.0 3e-67 MDGVIALYKERGMTSHDCISRLRKILHTKKIGHTGTLDPNVDGVLPICIGQATKISELLM GSGKVYRGSITLGMAYDTEDLDGHLIATKAIERPLSSEQIDGLLQKLTGHIMQVPPMYSA VKINGHKLYEYARRGEVIHREPRPIFIQSFKQTKVSSFDEKNQTQTIFFEVACSKGTYVR TLAVDFGKLINTPSVMSSLTRIKSGGFDISQCVTLEQVDKAAGSDTLSDIIEPLSTALSD YPAYQLDDSRWKIISNGGFLDQSILPDREPIVRLVYQGETKALYQFDEPKRVYRPFKMFL KNN >gi|238617813|gb|GG669608.1| GENE 218 232250 - 233206 525 318 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 22 312 20 314 317 206 38 1e-51 MDITKLHYPLDDDCQFKDKTVIAMGFFDGFHKGHQAVLQRAKEEAQKHGTKLVVLTYDHH PALVYKKMSSHEKRYITLLDYKLKLFKEFGVDEVLLVNYSYQFQSQSPQEFIQHFLSRFN PIAVVAGFDHTYGGEPADNMVNLPKYVNGAFKVITVPALKQNNQKVSSTQIRNNLDNGHI EKVNQLLGRPFQTEGVIVHGEERGRLLGYPTANVEHSEYQWLPTIGIYIVTVEIGRKKYL GMASIGKNVTFSDNGPMTVEINLIDFHQNIYGEVVRVNWLSHGRGEIKFKTADDLVEQLD RDEQDTRHYLSEHPDILN >gi|238617813|gb|GG669608.1| GENE 219 233539 - 234369 756 276 aa, chain + ## HITS:1 COG:lin1512 KEGG:ns NR:ns ## COG: lin1512 COG1420 # Protein_GI_number: 16800580 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Listeria innocua # 2 276 69 343 345 176 35.0 6e-44 MQGYRYYVDNLVQPDPLDDSAEDLIKSSFNIEFNRIDEIIQESAKVLSDLTSYMAVTFNP EPGNNLKLGGFRLVKLDDRQVMAIIVTNTGHVVDKIFRLTNVSSEQLETIVNIINSELVG KPISQVADKLRIDIPMLMTKYIQTPQGFLKIFGEMLSEAGRDKVHVDGKLNLLKFAERQN IDRLKPLYNLLDTEDTVQKIINPDSHDVQVRIGSELRNDLLKDYSIITGTYDLNEYGHGV IAVIGPTRMPYSKIIGIVGALREELTKKLLGYYDDN >gi|238617813|gb|GG669608.1| GENE 220 234388 - 235008 512 206 aa, chain + ## HITS:1 COG:SP0516 KEGG:ns NR:ns ## COG: SP0516 COG0576 # Protein_GI_number: 15900430 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Streptococcus pneumoniae TIGR4 # 31 204 3 172 174 118 45.0 6e-27 MADKKDDSLKSNEPADDLASKNDHGHEKKVQDAKAAKKSDFSKTEKHDSADEVVKLKQTV VNLQKKLDDMENRYLRAEADIKNIQTHAKKEQADLIKYDGQQLAHDILPIVDNLQRALAV EATDENGKQLKKGVSMVFEHLTKALSDNGVEEIDALNKPFDPKLQQAIQTTTADEKHPAD TVAQVLQSGYRLKDRVLRPAMVVVAK >gi|238617813|gb|GG669608.1| GENE 221 235035 - 236921 1774 628 aa, chain + ## HITS:1 COG:BS_dnaK KEGG:ns NR:ns ## COG: BS_dnaK COG0443 # Protein_GI_number: 16079601 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Bacillus subtilis # 4 628 2 611 611 773 70.0 0 MASNKIIGIDLGTTNSAVAVLEGNEPKIIPNPEGSRTTPSVVAFKDGKPSVGEVAKRQEI TNPNTVHSIKSHMGEPGYTVDVDGKKYTPQQISAMILQYIKDFAEDYIGDKVENAVITVP AYFNDAQRQATKDAGKIAGLTVKRIINEPTAAALAYGLDKQDKDEKVLVYDLGGGTFDVS ILELGDGVFQVLSTNGDTHLGGDDFDQRVMDWLIDGFKKENGVDLSKDKMALQRLKDAAE KAKKDLSGVTESEISLPFISAGENGPLHLQTTLTRAKFNELTSDLVAKTKTPFDNALKDA GLQVSDIDQVILNGGSTRIPAVQEAVKSWTGKDSNHSINPDEAVALGAAVQGGVITGDVK DVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFSTAADNQPAVDIHVLQGERPM AADDKTLGQFQLTDIPAAPRGVPQIEVTFDIDKNGIVNVSAKDKGTGKQQKITIKDSSGL SDDEIKKMMNEAKENEEADKKRKETVDLNNEVDQLIFQTDKTLKEVKGKVSDDEIKKAED ARDALKKAKEDNNVDDMKAKKDDLNKIVQDLAVKLYQQQAPKDGQGQSTDGQQQGNTGSS NGDSSDKGNDDGTVNGDFHEVHNDDDKK >gi|238617813|gb|GG669608.1| GENE 222 237029 - 238174 867 381 aa, chain + ## HITS:1 COG:L0272 KEGG:ns NR:ns ## COG: L0272 COG0484 # Protein_GI_number: 15674206 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Lactococcus lactis # 1 375 1 379 379 410 59.0 1e-114 MANKDYYDILGVSKDASDDEIKHAYRKLSKKWHPDINKAPDAEAKFKEINEAYETLSDPQ KRANYDQYGSADGAAGGFGGGAGAGGFGNFDSSGFGFDDIFSQFFGNRQQSADPSAPRQG RDLQYQMTMEFEDAIFGKTTRIKYNREAQCHTCGGTGAKPGTSPVTCSRCGGRGFIVTET NTPLGRMQSRQTCPVCHGTGKEIKEKCPTCGGSGHVDERHEIEVKVPAGIDDGQQMRLQG QGEAGTNGGPYGDLYIVFRVKPSKIFTRDGSTIYVDQQISFARAALGGKIKVKTVHGDVE LKVPAGTQTGTTFRLKGKGAPRLRGNGTGDERVTVTVTTPKSLNKEQKIAMEAFAKASGE NIGGKGASNFFDKVKDAFDKK >gi|238617813|gb|GG669608.1| GENE 223 238214 - 238411 81 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFLHFFQIHVVFSLSLSKKYLIPSSLVKKKECRNKFKLSANIYDNHKERTAAKFACLPTV PSHII >gi|238617813|gb|GG669608.1| GENE 224 238385 - 240223 1296 612 aa, chain + ## HITS:1 COG:L0159 KEGG:ns NR:ns ## COG: L0159 COG0481 # Protein_GI_number: 15673090 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Lactococcus lactis # 1 607 1 607 607 868 70.0 0 MDLKKMKEHQKYIRNFSIVAHIDHGKSTLADRILEMTDTVAKRDMKNQLLDNMDLERERG ITIKLNAVELTYHAKDGHDYEFHLIDTPGHVDFSYEVSRSLAACEGAVLVVDAAQGVEAQ TLANVYLAIDDDLEIVPVINKIDLPSAEPEKVRKEIENVIGIDASDAVLASAKKGIGIED LLEQIVHKIPAPSGDVNGPLKALVFDSVYDDYRGVVLSVRLFEGTVQPGDKIKMMNSGSE YEVTEVGVNSPNPVKRDYLMSGDVGYITASIKDITTTRVGDTVTNANDPAEKELPGYREM HPMVYAGLYPTDNAKFDDLREALEKLKLNDAALEFEPEVSQALGFGFRCGFLGLLHMDVV QERLEREFNLDLITTAPSVTYEAKLTDDTVKEVENPSEMPDSSSIKQISEPYVKATIMVP NDYVGAVMELCQHRRGIFDTMEYLDDYRVNVVYHMPLSEIIFDFFDKLKSGTHGYASLDY EVEDYRASDLVKIDILLNGEKVDALSFISHRQFAATRARDIVGRLKNIIPRQNFEIPVQA AIGAKIIARTNIKAYRKDVTAKLYGGDRTRRMKLLEKQKAGKKRMKAVGKVDIPQEAFMA VLQTDEEEKGDK >gi|238617813|gb|GG669608.1| GENE 225 240294 - 240395 82 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLIVKPGYGLSKKVHPHTIQGELSQLNLNSNIC >gi|238617813|gb|GG669608.1| GENE 226 240597 - 241031 374 144 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0995 NR:ns ## KEGG: Lbuc_0995 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 143 1 143 147 132 53.0 5e-30 MNLSEKIKAVLDSNASAYKIEQLTGVNSSIILRLRNHSRSINNLSLGTAEKLERYFDYRL AHLLKKNDNDPKLSYFRHRLTNLLQELYEAQETEDRKDQIVDDNRAMTAVIEQLFDDILD DAAEIRKLQKIYDRLAKQDPKLTF >gi|238617813|gb|GG669608.1| GENE 227 241365 - 241760 293 131 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0996 NR:ns ## KEGG: Lbuc_0996 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 131 1 131 131 181 68.0 6e-45 MELFKVRFINKIRPDTIEIRYRAVLESHASETIFEGSQLFHRDFLKPQLLKTGEVALRAI GNIFSAIPDNLVLDQLSFEQSHDRSVLEVPSKSSFDQFIINQNQLDRVQTHQNKDGKAII DTKMITELRIG >gi|238617813|gb|GG669608.1| GENE 228 242109 - 242387 119 92 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0997 NR:ns ## KEGG: Lbuc_0997 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 92 22 113 113 137 85.0 1e-31 MRPLLTPDNIYIFRFGRDRLDNRLIIRYSHKWTGRQRINEIDLRLHKQKHPRIFYSESEL LHYLEEHLLRHEAKVQAREAKKSKEVTDGASK >gi|238617813|gb|GG669608.1| GENE 229 242437 - 243399 1648 320 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227510268|ref|ZP_03940317.1| ribosomal protein L11 methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 320 1 320 320 639 100 0.0 MQWTEVSIITTSEAVEAVSNILMTYGATGVSIEDAKDFEKLSTGMYGHHGGYIDLEDVPH LSKGAIVSAYYPESRHIDQHAAEISSKVQGLTEFGLKSAPGELKISPVVDENWKTAWEKY YHPFAVTRYLTVVPSWDDYKPKNSLEQLIRLDPGMAFGTGTHPTTQLSLQALEMVLRGGE SIIDVGTGSGVLSIAAKLMGAKKITAYDVDDVAVESAKKNMRLNPQATDIPVAVNDLLKG IHTQVDLVVANILAEIIVPLVPQAYENLKPGGHFLMSGIIKDKYGLIINTLNQFHFKVAQ SMKMGDWYAVIAEKTVEEDK >gi|238617813|gb|GG669608.1| GENE 230 243399 - 244145 398 248 aa, chain + ## HITS:1 COG:lin1507 KEGG:ns NR:ns ## COG: lin1507 COG1385 # Protein_GI_number: 16800575 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 248 1 252 255 192 44.0 7e-49 MQHYFINENLTNNQRVILPLEIGHHLSKVLRAEVGDKVQLVSVTHLVYLAEIGSIDGRQV TATIQKELHMNVELPVEVTIVSGLSKKNKPELIVQKATELGADHIIFLPMARSIVKWDQK SEKKLKRLNEVALSAAEQSHRNLVPTVSYLHSLYELTKRPFDVKLVAYEEAAKDGEESNL AQALKDIRPDTSIVAVFGPEGGISSEEISLLTDQAYISAGLGPRILRTETAPMYFLSSVS VMTELLKS >gi|238617813|gb|GG669608.1| GENE 231 244282 - 246513 1699 743 aa, chain + ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 7 740 8 735 738 877 57.0 0 MTTKIWTANDVIKKVSEYMNDDHVKMVKRAYEFAKIAHKDQMRQSGEPYITHPIQVAGIL ADLHMDPETVSSGFLHDVVEDTGAELSDVQELFGNDVALIVDGVTKLSKIKYKSSEERLA ENHRKLLLAMCKDIRVMIVKLADRLHNMRTLKSLRPDKQRRIAKETLEIYAPIADRLGIG TIKWELEDISLRYLNPQQYYRIVHLMNSRRDQRVDYIQKAINEVKSAISDLDIKSEIYGR PKHIYSVYKKMVDKHKQFSQIYDLLAIRVIVQSIKDCYAVLGAIHTEWKPMPGRFKDYIA MPKANMYQSLHTTVIGPEGKPLEVQIRTEEMHRVAEFGIAAHWAYKEGITNGVKGSQDNN KLNWFKQIIELQEDTDDAADFMDSVKGELFGDHVYVFTPKGDVFELPKGAGPLDMAYMIH TEVGNHTTGAKVNGKIVPLDHQVKNGDIVDIITSTSSSGPSRDWVKMVHTRRARNKIKQY FRLEDREKNIENGRNIITRKLREEGFDAHKILTPDRLNQAAVNMHYQRDEDLLAAIGFGD VQPTGVVNRLTQDVRAKLKRERQDQAEKEVLEEHQTISESTESTKQHKKARKSSNGIVIE GVDNLLVRLSHCCTPVPGDKIVGYITKGRGVSVHRVDCPNIAKAEQDGQRLIQVSWANEP GDRTIYSAILSVQGYNRAGLLTNILNAVNNVTKTVSSVNGQVDNNKMATISLSVGIRNLE QLERLISTLKNIPDVYLVKRKFR >gi|238617813|gb|GG669608.1| GENE 232 246526 - 246972 298 148 aa, chain + ## HITS:1 COG:SPy1980 KEGG:ns NR:ns ## COG: SPy1980 COG1490 # Protein_GI_number: 15675771 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Streptococcus pyogenes M1 GAS # 1 145 1 144 147 169 60.0 2e-42 MKVVLQRVKQASVSINGEVHGRIGKGYMLLVGVSDDDDDEQIAYLVHKISHLRIFEDADD KLNLDIHAVDGAILSISQFTLYADTKKGNRPSFTKAGQPEHAERVYEAFNDQLRQAGLEV QTGIFGADMLVDLQNDGPVTIIFDTDHR >gi|238617813|gb|GG669608.1| GENE 233 247057 - 247698 502 213 aa, chain + ## HITS:1 COG:L126819 KEGG:ns NR:ns ## COG: L126819 COG0546 # Protein_GI_number: 15672886 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Lactococcus lactis # 7 185 8 179 215 102 33.0 7e-22 MINQLFWDFDGTLFDTYPMMVAAFKRALLEMDIDEVEIDQRSIYVTMRQHDVGTVIRKLS AFYGIDENTLRQLNKKYQIEMVKTAKPFKGVREVLEFVKQLSGHHYLLTHRDNQAKALLK EFDLLQYFTDFVTSDQKFPRKPKPDSINWLIDKNHVDRKSAIMIGDRKLDVQAGNNANIA SCLFDPDGLIVETGNPDIKITEVKELIPWLSKR >gi|238617813|gb|GG669608.1| GENE 234 247771 - 248613 740 280 aa, chain - ## HITS:1 COG:SA2374 KEGG:ns NR:ns ## COG: SA2374 COG3001 # Protein_GI_number: 15928167 # Func_class: G Carbohydrate transport and metabolism # Function: Fructosamine-3-kinase # Organism: Staphylococcus aureus N315 # 3 279 1 281 288 229 41.0 4e-60 MAIDNNWLTQLPIEKVERIHSVSGGDINDSYSLQTASNHYFMKVQPNRGKVFFDHEVEGL HLLGEVANTPKVIASGEINGDGYLIQNWVDIGQGSQYELGQMVAKVHQQHTEKFGLDHDF TAGKLPKINTWQSDWSTFYINQRLKPLAKLADQNGRWNEWREKHFQSLCNQFKQYYENHK VLPSLLHGDLWAGNFMFEASGKPMLIDPDVFYGDRELDIAMTTVFGGFYKEFYDGYNSVY PLETGLNSRIPWYQLNYLLAHLNLFGETYGPMVDQILEKY >gi|238617813|gb|GG669608.1| GENE 235 248627 - 249469 622 280 aa, chain - ## HITS:1 COG:lin1556_2 KEGG:ns NR:ns ## COG: lin1556_2 COG0860 # Protein_GI_number: 16800624 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Listeria innocua # 41 276 4 247 249 175 43.0 8e-44 MRKISENTSWIIAILTIMATFIILFIALYSNSVTVKVNQLNIRTGPSVTYSVKATVKQGA QLQVISRKNNWIKVIYKHKTIGWVASWLVTNGHIKDVTRLSEATIVLDPGHGGSDSGALS TTGQEEKTYTLIFAKLVAKKLRSKGAKVVMTRDTDKTVSLYQRPQLAASSSANAFISFHF DSSDEINTASGFTCYYYHSGDSKLLAQSVNQKMANLPLTNRGTEFGNYLVIRDNAVPAIL IEGGYINTDRDFKKIQSPSYQEKYADDVVSGLQTYFKTHN >gi|238617813|gb|GG669608.1| GENE 236 249847 - 251139 1227 430 aa, chain + ## HITS:1 COG:SPy2157 KEGG:ns NR:ns ## COG: SPy2157 COG0124 # Protein_GI_number: 15675899 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 423 1 420 426 506 58.0 1e-143 MRYQRPKGTADILPEEARKWTYVEETARMLFNDYRYQEIRTPMFENFDVFSRTSGDTSDV VTKEMYDFKDKGDRHISLRPEGTAGVVRAFVENKLYGPEHQRPVKVFYMGSMFRYERPQS GRQREFHQIGVEAFGSDEPELDVEVIAMGMDLLHHFGLKDIRLEINSLGDAASRDAYRQA LIDYLDPHFDELSKDSQVRLHKNPLRVLDSKDKQDQEIVKDAPSILDYLNDDSKKHFERV KKLLDTLHIPYVIDPDMVRGLDYYTHTIFEIMVDSKALGEGYTTICAGGRYNGLVEQLGG PEMPGIGFGLGMERLMLLMDAQGVKFPVLDQLDAYVVGIGEQTSIETLKIVQALRANGFA ADRDYLNRKPKAQFKSADKLNAQYTITIGESELESHTANVKSMASGKEINVPIDKIINDF DEIITSNFND >gi|238617813|gb|GG669608.1| GENE 237 251155 - 252942 1738 595 aa, chain + ## HITS:1 COG:lin1554 KEGG:ns NR:ns ## COG: lin1554 COG0173 # Protein_GI_number: 16800622 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Listeria innocua # 2 584 3 581 591 700 58.0 0 MKRTTYAGLVDDKLIGKEVVLKGWVQKRRDLGGLIFIELRDREGIVQLVFSEEFGKDALA VADKLRGEYVVEAKGTVVARAPKEINPKMKTGKIEVDITDAKILAVSKTPPFYIEDGINV SEDLKLKYRYLDLRRPEMQYNILLRNRIIQSIHSFFDGEGFIDIETPTLTKSTPEGARDY LVPSRVYPGSFYALPQSPQQFKQMLMGAGFDKYYQIARCYRDEDLRGDRQPEFTQIDMEM SFADQEEIMDVTEGFIAKVMKDAMGKDVKLPFKRMDWDESMARFGTDQPDVRFGMELKDL SDIMKDVDFKVFSGAVENGGQVKAIAVPGGADKYSRKDLDQFASYVERFGAKGLAWLKVT DDSFNGPIAKFFKDADLRQKILDKAEAKPGDLLLFAADNSRIVADTLAYLRVEIAKEQNM IDESKFAFLWIVNWPLFHWDVDLKRYVAAHHPFTMPNEEDVHYLLNDDEDPHKAYAQSYD IILNGLELGGGSIRIHTRKLQERMFKALGFTKESAEAQFGYFLTALDYGFPPHGGLAIGL DRFVRLLADRENIRDVIAFPKNSKAVEPLTSAPSPVANKQLDDLGIFVENQDKQK >gi|238617813|gb|GG669608.1| GENE 238 253112 - 253987 768 291 aa, chain + ## HITS:1 COG:SP2113 KEGG:ns NR:ns ## COG: SP2113 COG1284 # Protein_GI_number: 15901928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 4 288 26 310 313 284 48.0 1e-76 MDDVSKLMRRHTYVTKTSTSFIYGILVSIAVNFFWTPGHIYSSGITGLAQLLNTISSRAL PFTVSTGLGLFLLNIPLFLVAWRGIGREFTIFTIITVFLSSFMIQLLKPVPLTHDPIICA IFGGAVNGFGTGTALKNGISTGGLDILGLVIRDKTGKSIGSINIAFNALIVVAAGFAYGW PYALYSVIGLIVNAKVMDMTYTKQQRMQVMIITNRPNTVIDSVQNHLRRGITIVHNAEGA YQHDAKTILFTVISRYEMGELEEALLESDPNAFASISDSVKILGRFYEPKP >gi|238617813|gb|GG669608.1| GENE 239 254171 - 255235 561 354 aa, chain + ## HITS:1 COG:BS_tagB KEGG:ns NR:ns ## COG: BS_tagB COG1887 # Protein_GI_number: 16080629 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Bacillus subtilis # 1 353 35 380 381 167 31.0 4e-41 MSFDNNLDFIKQLAQKTPNRFRLIVLYRPETEAAATELAAFGIETHEFNDGIKFVFDFVP LLMGARVIFCDNYYAFLGGLVHPKKMKIIQIWHANGAIKKFGWEDPTTEERSKSDKKRFQ DVYDHFDEYIVASEAMGNVFQHSYHESVEKMQLLGYPRSDQYLDKQWQVSARERIYRAAP ELREHRVILYAPTYRPDKSFKLPVGLGAALSADQNAIVVVKLHPVLRNRENAMRQIGNPR IKFYHELATSELLAVADTLVTDYSSVAFDFSLLPNAKSLIFFMFDLERYRLDPGVQDDFL DWLPTKPVTTVDELKREIRARKPTSFEQFNKHWNTYNDGQATHRCLDRYLNLLK >gi|238617813|gb|GG669608.1| GENE 240 255312 - 256121 422 269 aa, chain + ## HITS:1 COG:lin1062 KEGG:ns NR:ns ## COG: lin1062 COG1682 # Protein_GI_number: 16800131 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Listeria innocua # 1 269 1 267 267 246 52.0 4e-65 MKEVYTLIKEQFQNIGIIFRISQYEDKAEYQSHYLGLVWEYLYPLIQIGIYWLVFGIGLK HGSTTHGVDYLPWMVIGITPWFFMNRASLDASKSIYQRVGMVSKMKFPVSILPTIKIVSN LSSFWTMLVFSILVSFLYGVHPSIYWIQWIYYFICMIAWMIAFGIFNSTISLLVRDWRIM LQSLMRMLFYMSGVLFNFETTSFPAPFVHILQLNPFFYVVSGFRDSMLGTMWFWQEPTLN IVFWGIVLFFFLVGSHLHYKFRSRFVDLI >gi|238617813|gb|GG669608.1| GENE 241 256219 - 257358 670 379 aa, chain + ## HITS:1 COG:lin1074 KEGG:ns NR:ns ## COG: lin1074 COG1887 # Protein_GI_number: 16800143 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Listeria innocua # 4 367 21 375 384 308 46.0 1e-83 MRVKKRLVLFESFNGKDVSDNPLAIYKKVIEDNPDMKNSCYFSVKPSAFRRLSQEYPKIR LLKRFTPLWVWYSARASFWVMNSRMPQWWKKNKGTTYIQTWHGTPLKRLGVDISHVEIPG NTTQQYHQQFIDEADRWDYLIAPNAYSKTIFQSAFGFHHHFLDIGYPRNDILYHENNLKS IDLLKKQLLGTSPEHVIMYAPTWRDDDYQKQGVYKFELPFSLKKFFEVVDSNTMLIIRPH YLVKDHINISGFEDRVKICAEQDINQLYLITDLLITDYSSVMFDFANLKRSMLFFPYDLD HYRDELRGFYFEYQPQNLPGPMVTDATRFYSELALFNTTRRFTGYEKNLEDFNTKFCAWE NGTASQKVSEIILKGMSKD >gi|238617813|gb|GG669608.1| GENE 242 257394 - 258275 789 293 aa, chain + ## HITS:1 COG:lin1487 KEGG:ns NR:ns ## COG: lin1487 COG0648 # Protein_GI_number: 16800555 # Func_class: L Replication, recombination and repair # Function: Endonuclease IV # Organism: Listeria innocua # 1 288 10 295 297 369 62.0 1e-102 MNGKDMFLGSAKEAAGFGENVFMVYTGAPQNTVRKPIEKLNGPAGKAYMAEHNLKEVVVH APYIINLGNTLKPQNFAFGVQFLQQEIARAEAIGAKQIVLHPGAHVGEGPQKAIDQIAKG LNEVITDNQSAQIALETMAGKGTEVGITFEQLAEIISKVSNNKKLSVTFDTCHTNDAGYD VKNDFDGVLNEFDHIVGLDRLKVIHLNDSKNERGSHKDRHQIIGLGTIGFKALNYIAHHD QLASVPKIMETPILKDPENKRIKYNPHGYEVSMLRKQVFNPNIIEDMKAGKPF >gi|238617813|gb|GG669608.1| GENE 243 258460 - 259296 581 278 aa, chain - ## HITS:1 COG:lin1980 KEGG:ns NR:ns ## COG: lin1980 COG1806 # Protein_GI_number: 16801046 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 11 267 7 264 270 217 46.0 2e-56 MGEIYMKTQNIFIISDSSGATAQTLAQTAASQFPNIKAEIRRFPFIQTESILKGILNLAL TKKAMIFHTLVSIELSQMVVTFCKEHGIYDFDCIQTPMKLLSEATGEEPAHVPGLIHDLN ENYFERISAIEFAVENDDGKNAKGLLEADIVLLGVSRTSKTPLSLYLANQNQRVANLPIG PDLHIPDELNHVKKDRIFGLLNTPEKLSRIRKQRMISYGLSADTPYSDTKNIKIELDFAK KLYKKIGCLVINVANKSIEETATIILESLNLDTTTFED >gi|238617813|gb|GG669608.1| GENE 244 259475 - 259666 313 63 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227510283|ref|ZP_03940332.1| 30S ribosomal protein S21 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 63 1 63 63 125 100 5e-27 MAKTVVRKNESLDDALRRFKRTVSKSGTLQEYRKREFYEKPSVKRKLKSEAARKRNNKKK RRF >gi|238617813|gb|GG669608.1| GENE 245 259763 - 260212 351 149 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 147 1 146 147 139 47 2e-31 MSVYDQLNSDLKDAMKARDKVRLGVIRGLKSQIMNAEVDNGNQKLTDEQISSVVMKEIKQ QKESLEEFQKANRDDLVKDQSAKLKIAEEYAPKQLSEDEVEAIVNQTIEQLHAESMADFG KVMGAIMPKVKGKADGSIINKLVKKQLQS >gi|238617813|gb|GG669608.1| GENE 246 260333 - 261298 954 321 aa, chain + ## HITS:1 COG:lin1504 KEGG:ns NR:ns ## COG: lin1504 COG1702 # Protein_GI_number: 16800572 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Listeria innocua # 13 317 11 315 319 384 63.0 1e-107 MAETQQITKELVVSDPNQLLQLVGTQNEFITILEEGMGVSINVFGNSLRVSGDEQSVGTT LNILDNILTLVQKGININSSDFISAINMSQNGTLEYFQDLYNQVLIKDAKGKAVRVKTFG QRQYIQAISHHDVVFGVGPAGTGKTYLAVVMAIAALKKGTVDKIVLTRPAVEAGESLGFL PGDLKEKVDPYLRPIYDALHAILGAEHTERLMDRGVIEIAPLAYMRGRTLDNSFVILDEA QNTTNMQMKMFLTRLGFGSKMIVNGDISQIDLPKHAASGLVRAQAILKGIDQIEFVTFSA KDVVRHPVVAKIITAYEKNGQ >gi|238617813|gb|GG669608.1| GENE 247 261322 - 261807 458 161 aa, chain + ## HITS:1 COG:lin1502 KEGG:ns NR:ns ## COG: lin1502 COG0319 # Protein_GI_number: 16800570 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Listeria innocua # 1 161 4 161 161 129 44.0 2e-30 MDLEIYDKTEKGISEKDEKMIRDVLNFAGSYIHLADNTEMSVTLVNNDEIHKINREYRGV DRATDVISFAIEDEAEDDDFPIVMDEDMQESIPENIGDIFVSVDKVAEQADYLGHSFQRE LGFLVVHGFLHLNGYDHMEKADADIMFPLQKEILNAYGLKR >gi|238617813|gb|GG669608.1| GENE 248 261791 - 262186 320 131 aa, chain + ## HITS:1 COG:SP0968 KEGG:ns NR:ns ## COG: SP0968 COG0818 # Protein_GI_number: 15900845 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Diacylglycerol kinase # Organism: Streptococcus pneumoniae TIGR4 # 4 130 4 130 131 94 41.0 4e-20 MVLKDKRQIEKNKHFFQSVGHALEGIKKLILEERNFRFDLIITVVVLCIGLLMRIAIYDW LWLFAAFFSVIGSEVLNSIVENVVDLIVGHHFDLMAKRAKDIAAGGVLLSAVFAMIIGAL IFIPKFVELLK >gi|238617813|gb|GG669608.1| GENE 249 262199 - 263101 886 300 aa, chain + ## HITS:1 COG:BS_bex KEGG:ns NR:ns ## COG: BS_bex COG1159 # Protein_GI_number: 16079583 # Func_class: R General function prediction only # Function: GTPase # Organism: Bacillus subtilis # 1 300 1 301 301 393 62.0 1e-109 MDNPNYRSGFVAIVGRPNVGKSTFLNRVVGQKIAIMSDKAQTTRNKIQGVYTTDEAQVVF IDTPGIHKPQNKLGDFMMDSALSALKEVDAVLFMVNATERRGAGDNFIIDRLKDVHKPIY LLINKIDEITPDDVMAIIEQYKNALSFKEVFPISALQGNNVPELLTSLIKELPNGPQYYP KDQVTDHPERFVISELIREKVLQMTRQEIPHSTAVYIESIKKQDEVLHIQATIIVERDGQ KGIVIGKGGSMLKKIGTLARKDIENMMGNKVYLELWVKVEAHWRDKANLLNSYGYKKGNY >gi|238617813|gb|GG669608.1| GENE 250 263201 - 263962 503 253 aa, chain + ## HITS:1 COG:L1006 KEGG:ns NR:ns ## COG: L1006 COG1381 # Protein_GI_number: 15672040 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 5 248 2 243 251 182 38.0 5e-46 MVKAKPAEFHGILLYTKAYRERDLLIKFLTREFGKKMFLVHGAKRPKFRMRAAILPFTYG AYFGDLKDDGLSYINNYKRIDHFQGITADITKNAYATYIMSLIDLAFQDSIAIPKWYDQL MIGLSLIDDGFDEEIITNIFEIQLLSAFGVEPDWVDCAICHRRDLPFDYSEAYGGLLCQN HFDKDPYRLHLDQRTIYFLRLFSIVDLTKLKTIQMSDKTKKSLRKVIDQIYTNSVGVVPK SKRFIDQLGKFKI >gi|238617813|gb|GG669608.1| GENE 251 264255 - 265184 761 309 aa, chain + ## HITS:1 COG:SPy1689 KEGG:ns NR:ns ## COG: SPy1689 COG0752 # Protein_GI_number: 15675549 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 1 305 1 304 305 498 78.0 1e-141 MTEKLSVQEIILRLQQYWAAQGCMLMQAYDTEKGAGTMSPYTFLRAIGPEPWNAAYVEPS RRPADGRYGENPNRLYQHHQFQVIMKPSPENIQDLYLNSLKELGIDPLEHDIRFVEDNWE NPSMGCAGVGWEVWLDGMEITQFTYFQIVGGLEMNPVASEITYGLERLSSYIQNVNSVFD LEWSDDVLYGDIFKEPEYEHSKYSFEESDQEMLLNLFNDYEREAKRLLKLDLVHPAYDYI LKCSHTFNLLDARGAVSVTERAGYLSRIRNLARGVAKEFVAARKRLGFPLIKDEKKRQEL LKDDEGEEK >gi|238617813|gb|GG669608.1| GENE 252 265184 - 267265 1970 693 aa, chain + ## HITS:1 COG:lin1495 KEGG:ns NR:ns ## COG: lin1495 COG0751 # Protein_GI_number: 16800563 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Listeria innocua # 1 692 1 688 688 615 44.0 1e-176 MANNFLLEIGLEEIPAHVVTPSINQLKKRASDYLKDQRITFDQIKTFSTPRRLTLYITGL ADKQPDIDKSVKGPAKKIAQDTDGNWTKAAIGFSRGQGATTDDITFKEVKGTDYVFVEKH IAGKSVDEVLTGMKDVITAMTFPTMMKWANYSFEYVRPIKWLVALLNDKVIPFSILDVST DRVTSGHRFLGKDVELANADEYEEKLTQQFVIADAKKRKELIVKQIHKIAEDNDWQINLD PDLLEEVNNLVEWPTAFAGKFNDKYLKIPDEVLITSMKDHQRFFYVTNGDGTLLPHFISV RNGNDYDIQNVIAGNEKVLTARLEDAMFFYEEDQKKTIAEDVERLKKVSFHDKISTMFEK MQRVQVISNYLGKQFGFSDKELEDEQRAAEIYKFDLVTGMVGEFAELQGVMGEKYALLNG EAPAVAKAISEHYMPISANGALPASNVGALLAVSDKLDSILTFFAAGMIPSGSNDPYALR RQATGIVRIVADKNWNFDLIDTLKAIINLQDKKQVAPKLDQAGQITAVSDFIKDRIKQYL DDLGIRYDISDAVTSGSQTDILFNISSGQVLQEQKDDDAFKSIIESLTRVLRISKKGHFK DNDLVVDGSLFENESEKVLNQKVASAAEGYYEISAKEDFDRLSGLKDAINAYFDATMVMD KDEKLRDNHLRQLTLLSHLILHLGDLDKLVVKG >gi|238617813|gb|GG669608.1| GENE 253 267630 - 269234 1031 534 aa, chain + ## HITS:1 COG:lin1492 KEGG:ns NR:ns ## COG: lin1492 COG0358 # Protein_GI_number: 16800560 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Listeria innocua # 1 527 73 619 626 333 36.0 6e-91 MMEIENLSFPEAVKKVAEMEHLDVDSKYFTDAAPASRETSEQKQLIELHEQAVKLYHHIL INTKMGKSALDYLHHRGVNDETIDLYQLGYAPQQRLLKPFFDERQADYQLLRKSGLFSET QDGKLRDRFVDRVMYPIRNATGQTVAFSGRLLAKDSDMPKYLNSPETELFNKRKILFNLD LARPNIRSKQPALLFEGFMDVISAYQGGIKSGIASMGTSLTEQQIYDIQRITREVIVCYD GDAPGQKAIKRAIDAFKQTDHQLDLKVVSIPDGMDPDEFIRNRGADKFQTLLQHAQSPVD FDLNYLKQEANLKTEEGQAAYISEALKLISTISSGISRDLYLNRLADSFSIDKQVLKQQL QPLIRKTVTKRANHQIPAGQPVNQSPQKRDKVTVAQMQLLNRMLHNHDVWVKVSGISGFS FVDEQYQMLYLLAEGYFSKFDQYNVATFSNLITEDSLQSLLIDIDMMNLPEEPSPMEIDN DLDVIMNRAPVETKIKKKQAELRQASKIGDVDKQRQLMVDLLKLEQQKRTKEQV >gi|238617813|gb|GG669608.1| GENE 254 269252 - 270421 1091 389 aa, chain + ## HITS:1 COG:lin1491 KEGG:ns NR:ns ## COG: lin1491 COG0568 # Protein_GI_number: 16800559 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Listeria innocua # 32 389 17 374 374 495 79.0 1e-140 MANKKTNNAKVVKKATTKTKAAAAKKTQKPYKKVFDQIVKDNKPIGHITYDELQKKIEEP FSLDKKEMEELLENIEDSGISVVDDNGDPDPRAIDAAKKVTKKELSDVSAPTGVKINDPV RMYLKEIGRVSLLSADEEINLAKRIESGDEEAKQELAEANLRLVVSIAKRYVGRGMQFLD LIQEGNMGLMKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKL IRIQRQLLQDLGREPLPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFI EDQDATSPADHAAYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVT RERIRQIEAKALRKLRHPSRSKQLKDFLE >gi|238617813|gb|GG669608.1| GENE 255 270534 - 271238 597 234 aa, chain + ## HITS:1 COG:L84257 KEGG:ns NR:ns ## COG: L84257 COG2384 # Protein_GI_number: 15673054 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Lactococcus lactis # 1 230 1 229 230 188 47.0 6e-48 MNGTHLSKRLETISEHVEPGSRLADIGSDHAYLPIHLAKNKTINYGVVGEVAKGPLSNAI NEISKEGLLDILHPRLADGLAAIEADDQINAITIAGMGGILISQILENGQDKLTGQEKLI LQPNVGENIVRTWLMNHQYFIKTEQILEEDHHIYEIITAVKSAQPVGYSAKQLKFGPYLL IEKSPIFISKWQEERQQLQRVISNMKRAVHEDKPKMKKIEQQIQEIDEVIDSER >gi|238617813|gb|GG669608.1| GENE 256 271228 - 272343 790 371 aa, chain + ## HITS:1 COG:lin1489_1 KEGG:ns NR:ns ## COG: lin1489_1 COG0327 # Protein_GI_number: 16800557 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 121 6 124 130 132 57.0 2e-30 MKGRELVQKFEAFAPKKLAMPKDPIGLQIGSLDQDVHKVMTTLDVRPEVVDEAIENDVDF IFAHHPVMFHPARNLDYSDPQNAMYAKIIAHGITVYAAHTNLDTADGGMNDWLADELSLT NVRGLVPGYAESVFRLTVTVPKVYATAVRMSLVDAGAEINDGQYTGYTYEMDGTVYYVPQ PGADPTIGMAGEPTELEDSRLEFEVPEKNLNRVLKTLHDVHPLQQPLYNIIRLEDKKHQY TMGRVGELPEPMRLESFAKRCKSVFHISGLRVIANDLYRTIKTVAVLGGDGGKFYKTAQK AGADAYITGDVYYHTGHDMLASDMPVIDPGHHIESICIPKLAKMVNKWSQENNWGLSVIE SQINTDPFTFL >gi|238617813|gb|GG669608.1| GENE 257 272372 - 273610 1265 412 aa, chain + ## HITS:1 COG:L60596 KEGG:ns NR:ns ## COG: L60596 COG2195 # Protein_GI_number: 15673792 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Lactococcus lactis # 3 408 2 407 413 476 57.0 1e-134 MAKYPELISNFLKFVKINSRSNPKSRTIPSSKRETAFLNMLKDLLSDMGLTDVHTNEQSA YVFATLPSNLDKKVPTVGFISHIDTADFNSENIDPQIIENYDGQSIIPLDKDGEFKLDPK VFPSLKKYKGDTLITTDGSTLLGADDKAGVAEIISSIAYLQSNPEIKHGTIKVAFGPDEE IGTGADHFDVNDFGADFAYTVDGGPLGDLNYETFNAAEATVSIKGTDVHPAEAKGVMVNA IQVGMDFHAALPEYDRPEKTVERQGFYHIYDFQGSVDHTNMAYIIRDHDRDRFEARKRLF EGIADQMNKEFSEKRISVEIKDQYYNMGEIISKDPTVIEVAEQAMKNVDVKPHIFPVRGG TDGSKISYMGLPTPNIFAGGENMHGRFEYVSEQTMEKATDVIIEIAKLYAQK >gi|238617813|gb|GG669608.1| GENE 258 273758 - 276367 1642 869 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 7 854 7 804 815 637 43 0.0 MNPDNLTEAVTQAISQAQQIAVTRKQQNITVAHLFKFLVQPGELARQIYSELGLNLKDLD KELDTEIDQIATVEGSNISYGQSLSSNLYELLQDAEQVKNEFGDSYIAVDTLTIAVMQLH GDNFTDYLIKQDITEQKVRNVVEKIRGGEKVTSKNQEDNYQSLEKYGTDLVKAARDNKLG PIIGRDEEILDVIRILSRKTKNNPVLIGAPGVGKTAVVEGLALRIASNDVPENLKNKTIF QLDMGSLIAGAKYRGEFEERLQAVLKEVKKAEGQIIMFIDEIHNIVGAGKAEGSMDAGNI LKPMLARGELHLIGATTIDEYRKYMEKDKALERRFQRVMVHEPSVEDTITILRGLSEGLE IHHGVRIHDNALVAAAKLSDRYITDRNLPDKAIDLVDEASAEIRVEMNSSPTALDQSNRQ LMRLEVEEAALKQETDEASKKRLKEVQEELANIKEKVNGLNARWKQEKDAIQKIGDKKKQ LDQARNDLKQAENDYDLNKAAVLQHGTIPQLEADLKKLEENDQHADWLVSESVTADEIAK VVSRETGIPVTKLVEGERQKLLHLADNLHKRVIGQNEAVTAVSDAVIRSRAGLQDPSRPL GSFLFLGPTGVGKTELAKALAEDLFDSENHMVRIDMSEYMEKESVSRLVGAAPGYVGYEE GGQLTEAVRRNPYTIVLFDEIEKAHPDVFNILLQVLDDGRLTDSQGRTIDFKNTILIMTS NLGSDILLEGTDENGIISDNAKKQVDQLLKASFKPEFLNRIDDVIMFKPLSRTDIEKIVQ KLIDQLSVRTKAQDIKLSISDQAKQWIAKNGYEPQYGARPLQRYVTNVVETPLAKMIVGG QVKPHSIVHINLENDALSFVPEQVTATQV >gi|238617813|gb|GG669608.1| GENE 259 276380 - 277261 433 293 aa, chain + ## HITS:1 COG:PA3301 KEGG:ns NR:ns ## COG: PA3301 COG2267 # Protein_GI_number: 15598497 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Pseudomonas aeruginosa # 5 285 6 296 316 112 30.0 8e-25 MSKEYRIPTNNHTELAVTVFSTTHPVGIVQVIHGALEHQSRYFDFAAYLNQQGFIVLTSD NRGHGRSVSKDDPLGIMFSWQQLVNDQVCLSHFIKRQYPGLPLFLFGHSFGSILGRLYLQ KHDQLLNGLILTGTANYIPMVSIGLLLGTVYTRLHLENRYSKLLSRLSGLTPGDHSWLSY NLENVQRVSNDPDMINQYPVLSLMTLWQGDYELKQVTHFHCQRPGLPIISITGDHDKFSG GSHGLTDTIKTLHKIGYSNVKNKVMPHMKHEVLQEVDHQKVYEQIDAFLYEHI >gi|238617813|gb|GG669608.1| GENE 260 277375 - 277566 211 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227510299|ref|ZP_03940348.1| ## NR: gi|227510299|ref|ZP_03940348.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus buchneri ATCC 11577] conserved hypothetical protein [Lactobacillus hilgardii ATCC 8290] conserved hypothetical protein [Lactobacillus buchneri ATCC 11577] conserved hypothetical protein [Lactobacillus hilgardii ATCC 8290] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 63 20 82 82 110 100.0 3e-23 MKLIASNLVVIFWALIFGEIIGYIANQLEVLPYNPMQIGITAAIVGFCATNGIYLISKGS FSK >gi|238617813|gb|GG669608.1| GENE 261 277698 - 281048 2499 1116 aa, chain + ## HITS:1 COG:BS_dnaE KEGG:ns NR:ns ## COG: BS_dnaE COG0587 # Protein_GI_number: 16079975 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Bacillus subtilis # 1 1116 1 1113 1115 828 42.0 0 MTYVPLQVISSYSLLQSPIRISELVTEAKKRGYKALAMTDINVMYGAVEFYDTCIDAGIQ PIIGLTLNLPGVMLSENNYSILLLAKNQTGYQNLLKISTLKNSGETDVTIDQLNGRLDGL YVILPPLAEINDLLLQGKSADISDLISKLMDLGLTKQDLKFGVDYHSSDALIDMLSKVAA DNQVQLIADAPVQYLNAEDYFPMQVLKAIAAGTKISNVAELSQQVGPYFLRPQDRMEKEY QRLHLNAALQAIDEVVSNCHVEIKKKQPKLPQFETPNDMEPGQYLRQLCEKGLSKRLEAA HISDDAPYRHRLDRELSVIHSMGFDDYFLIVWDVINFAHQARIITGPGRGSAAGSLVAYT LFITDVDPIKYELLFERFLNPERVQMPDIDLDIPDDKRDDVIQYVHQKYGHQRVAQIITF GTLAAKQATRDVGRVFGLNPNQQDVWSKAIPSAFHVTLADAYHNSQQLKNLVADSDLNKS LFKTAQVLEGLPRHYSTHAAGLVLSDNLLVDLVPLQDGNDGLLMTQYSKDYVESVGLLKI DFLGLRNLTILADALAEIKQATGQKINISQIPLDDKKTLKLFANGDTTGVFQFESSGIRS VLRRLHPEQFEDVALVNALYRPGPMENIDEVVKRKSHQEALTYPDQSLEDILKSTYGVIV YQEQVMLVASKMAGFSLGQADILRRAMSKKKLKVMDRMKSLFLTGAEKKGHPKQVAEKVF DYIEKFANYGFNKSHAVAYSKMAYELAYLKVYFPGEFHVALLNSVQNSSVKMKEYLSDAK SMGVKVVAPDINKSRADFSYQDQQIVFGLASIKGVRHDMVQDILNDRDQNGRYKSFPNLL ARLSDKYRKPDLINALIYSGALDGFSYNRSELISAAPEFISSIQLSGDSMSLFKALEPTV PRKPEMPLMQRLEKENDYLGAYLSGHPVERFTALRKRLNAKLTNQLVVGMNQVVLILYIT KVKIIRTKTGKQMAFFDGSDEVGEMSVTVFPNLFIKIQSWLHKDMVVAIRGKVEKNNTIQ MVAETIQPADNLSRKSAGVKKQPHWYLRIDPSHDKNQIFHKLTELSVQYRGSVSLVVHES ASEKTWILGNNFNLQQGDQIKDKLITIFGQNNVVYK >gi|238617813|gb|GG669608.1| GENE 262 281279 - 283036 1685 585 aa, chain + ## HITS:1 COG:lin1605_1 KEGG:ns NR:ns ## COG: lin1605_1 COG0469 # Protein_GI_number: 16800673 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Listeria innocua # 1 475 1 475 475 561 62.0 1e-159 MKKTKIVSTLGPASTDVDTIVKLIEAGANVFRFNFSHGDHPEHLDRLNKVHEAEKKTGKT VGIMLDTKGAEIRTTVQKDGKIEYHTGDVFRISMDDSLEGVKDKIAVTYTGLYDDVHEGG HVLFDDGLLDTVVTKKDDANKELVVTVQNDGVLGSRKGVNAPGVSINLPGITEKDSDDIR FGLDHDIDFISASFVRKAQDVLDIRALLEEKHMEHVQIFPKIESQEGINNFDDIIKVADG LMVARGDMGVEIPAENVPLVQKTLIKKCNQLGKPVITATQMLDSMQENPRPTRAEASDVA NAVFDGTDATMLSGESANGEYPVQSVQTMARIDVKAENAFSEFGTPRPTFDASDVTESIG DSVARVAKELGIHTIVAATRSGYTARMISKYHPDADILALTFDERTRRGLMVNWGVHPIL VDEVKSSDEIFELAAKKALETGLAKEGDLIIVTAGVPVGESGTTNLMRIQLIGSKLVQGQ GVGDKTVIGKAVVAKDAADAKSKVTEGSILIAKSTDKDYLPAIEKASAVVVESGGLTSHA AVVGISMGIPVIVGAAGATTKISDGELITVDSHRGVIYHGASSSL >gi|238617813|gb|GG669608.1| GENE 263 283229 - 284101 509 290 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 5 290 1 284 285 200 39 9e-50 MDKNLMAQVLKGILTDENDRYYFVQIEGETFQLDKAEIKKPFKIGAEFTGFTYENEQHRM QITRQIPKIRRDHYAFGTVVKGKFGLGVFVNIGLPNKDVVVSVDDLPTVSKLWPREGDKL LISLTVDNKARIWGHLADEEIFETIARPVKERLQNKNIKARAYRLKLSGTRLLTDDYHLA FLHPSERLEEPRLGEEVEARVIGTLRDDSINISTRPRAYQEIGEDAEMILAALDHTESKQ LAFSDKSAPEDIKDYFGISKGAFKRALGHLLKENLISQEDGHITLKKQED >gi|238617813|gb|GG669608.1| GENE 264 284103 - 284990 593 295 aa, chain + ## HITS:1 COG:lin2069 KEGG:ns NR:ns ## COG: lin2069 COG4974 # Protein_GI_number: 16801135 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Listeria innocua # 1 295 1 297 297 311 53.0 1e-84 MDNQLADYLHFLRVERGLSENTIKSYQQDLSEAIHFFQKTTKDISKVDQFLILNYLENLQ QEKKSRNTVIRTVSSLRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEVNKLLS MPNVSKPLGVRDRAMLETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDRERIIPIGD VAIDWITKYLKTTRIDLLRKRTNTDFVFLNAHGRRLTRQAIWQMIKKYVKLAGIKRHVTP HTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKHLTEVYQKFHPRA >gi|238617813|gb|GG669608.1| GENE 265 285007 - 285375 262 122 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1033 NR:ns ## KEGG: Lbuc_1033 # Name: not_defined # Def: RibT protein # Organism: L.buchneri # Pathway: not_defined # 1 119 1 119 120 160 65.0 2e-38 MLYQYRKDYQKITMGLFSLVSDLQNMDLVSQEMTWYADKSDRMIYLWKDRHNNWSGLVGI EVENDQLLIHRLILAPPSRNQENYSRLLDELQSLYPKEKIIGGFETKEICAKWEQSKDHE RI >gi|238617813|gb|GG669608.1| GENE 266 285362 - 286114 463 250 aa, chain + ## HITS:1 COG:SA1326 KEGG:ns NR:ns ## COG: SA1326 COG1354 # Protein_GI_number: 15927076 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 9 247 11 248 251 139 36.0 5e-33 MNVSDKEPELHLNDFDGPLEVLLHLIQESKMDIYDIPIAEITKQYMDYIYDAQQLNLDIV GDFFVMAAKLMVIKSKMLLPTVVDEATDEVEEDPREDLVNQLINYKRYKLIAGKLKDYEN KRRQSFTRSELAVSASKETLTVPSPFDKGDIMASYVDALKHFRYNQPLSTTVHEWQFTIE SQTALVRQLLDCRTEQISFNHVIQHSTKPEEIVTDFLAILEMAKYNEVRLKQKNRHETIE IRKGPAYGSK >gi|238617813|gb|GG669608.1| GENE 267 286101 - 286703 499 200 aa, chain + ## HITS:1 COG:SPy0367 KEGG:ns NR:ns ## COG: SPy0367 COG1386 # Protein_GI_number: 15674517 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Streptococcus pyogenes M1 GAS # 6 179 4 177 183 134 42.0 7e-32 MAVSNLAKIEALLYASGDEGINLRQIALRTGLELSACRQLVEKIAQNFNKNKDCGLKLLV ANDVYRLGTKNELAELVRDYVNDAKPRVLSQAALETVAIVMYNQPITRIEVDDIRGVNSS AILHRLLNQGLLKITGIKQEVGNPKQYGVTNFCLDYFGLKTLNDLPALPKDEVLDDNTSD SLLTRFNEQIDQGKQETKNE >gi|238617813|gb|GG669608.1| GENE 268 286696 - 287421 604 241 aa, chain + ## HITS:1 COG:BS_ypuL KEGG:ns NR:ns ## COG: BS_ypuL COG1187 # Protein_GI_number: 16079373 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Bacillus subtilis # 3 225 2 226 229 256 61.0 3e-68 MSERLQKVMAHAGVASRRKAEKLIVEGHVKVNGKVVRELGTKVTESDEVEVDEVPISKEV PVYYLLYKPRGVITAVTDDKHRKTVIDLLSEVTERIYPVGRLDYDTSGLLLLTNDGDLDN HLTHPKYEVDKTYVAKVKGTITNDDMKKLRTGIHIDGRKTASAKATVIRNNNNSTIVSLT IHEGRNHQVKKMFLALGHPVEKLSRQSYGFLNLDGLQPGDYRRLKPHEVEELKKMSQDRK R >gi|238617813|gb|GG669608.1| GENE 269 287669 - 288253 512 194 aa, chain + ## HITS:1 COG:lin2059 KEGG:ns NR:ns ## COG: lin2059 COG3601 # Protein_GI_number: 16801125 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 14 180 9 171 203 83 29.0 2e-16 MEHSSNKQLLTTRLVEMSVLAGCSYVLMFISFPIIPIVPYMKIDFADMPILIGTVLFGPV SGITIAGLKSLLYWLTTSGGSLIGLIGVGSSFLSSVTLILAFYLGNRFFGSMKNSLRIIL VIALMMISLTVIMSLSNWIAVIPLYMSMVGMKIGMPLSSLILFGVVPFNLIKGIVVGGLF YAIKDKVLPRLKLK >gi|238617813|gb|GG669608.1| GENE 270 288270 - 288455 63 61 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAFERRHWDEELKRIKIVAKSILVTYQNIKKRSGQFPTSQFSRMQPLLFYNKLHYLYTWF N >gi|238617813|gb|GG669608.1| GENE 271 288391 - 289440 687 349 aa, chain + ## HITS:1 COG:lin2057 KEGG:ns NR:ns ## COG: lin2057 COG4955 # Protein_GI_number: 16801123 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 297 8 291 335 61 26.0 2e-09 MDLATILILFSSSSQWRRSKAIKNILIGRRTVSNLYWALQYGLLKDFGSLHGALPDNIDQ AVAKLKQAELVKADSELQILLTEKGNDYQSKLLASLPELTLFAWSARYDVFRFSKRLNLA IQIVSEYSYSNNHYYPQTIGLLDSQLIKKWFIQNKADHLPVYLYSMLNHFLEKLSRDEFA EIFTQNLSGHHLSGQTDAQIGQTQGKSPTVISLTKLLLYTQLLTELLSKPNSKLQPLTQG LARPVISNSAAETFTMFCHYPGLTIAKIAQKRHIKLTTAYEHLLEAAIVLPQSDIPFQRL LNPKLEQKLSAIQPNDLGEWSFRVASEQVDKLDFFNFRLFQIKQLKQTD >gi|238617813|gb|GG669608.1| GENE 272 289460 - 290914 694 484 aa, chain + ## HITS:1 COG:lin2056 KEGG:ns NR:ns ## COG: lin2056 COG0514 # Protein_GI_number: 16801122 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Listeria innocua # 2 451 1 445 467 376 44.0 1e-104 MLNLQDELTKYFSFKRFRPGQEKILTMLLKGKNVLAILPTGGGKTLLYQLYAAITHQRII IVSPLISLMQDQVSRLQFLGSKRVIALTSAIDFKERQFIMNHLEQYQFIYASPEMLANPQ IMEKFKQLSVGLLVIDEAHCISEWGPDFRPDYLKLNQVRKSLKMPLTLMMTATATTKTRQ DILERMEMDQDRVNQIVLSVNRKNIFLSARVCKNQREKDDLLVKLVSKLHGAGIIYFSSR ATAETVAALLNHDTSKRVEAYHGGMEGQYRFRIQQQFMNNEIDIVCATSAFGMGIDKNDV RYVIHYHLPGNIQNYMQEIGRAGRDGKPSLAILLYEPNDRYLQANLIDNTYPEDNLISYL YQHPQVMKKNDAFRVVKYYYENHFSTDQAISFLNRSKEQRLTGLQQMYQYIFTPGCRRKV LLNHFDEQLVDDDHENQFCCDFHFNFWTKWEIFNDRYLKSSDFRQQNAVKDWHEVLKSLF LSKN >gi|238617813|gb|GG669608.1| GENE 273 290979 - 291653 502 224 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1040 NR:ns ## KEGG: Lbuc_1040 # Name: not_defined # Def: peptidoglycan-binding lysin domain-containing protein # Organism: L.buchneri # Pathway: not_defined # 1 224 1 209 209 144 47.0 2e-33 MNTNGDHKRSDEDQPWNQTFSEDRDEHGNLSRVKLRQQSHNHNMITIVLVTLIIVIALVS LVYGLTKQSAMGSGSNHHATVAMSQPSSKKKTSTSESSVKKKAASQKPVKEKKTSSVSSS VSSNSRSRASSYSTNQSASSYKDNPSTSTTASDSSRASSDSQSQQPNTTNQTSTSSGHEY ATVQAGQGIYRVAVNNGLTMSQLMRMNGLSSTSQIHPGQKLKVK >gi|238617813|gb|GG669608.1| GENE 274 291792 - 292475 227 227 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Nichols] # 8 218 37 281 863 92 27 4e-17 MHKNGLQVAIDGPASAGKSTVAKLVAKQFNYIYCDTGAMYRAVTLKTIRSGISLDNEKEI SAIVRNSKITFAPDENGQKVFIDGDEITQDIRSENVTNSVSAVAAIADVRKQLSAQQQEI AKDGGIVMDGRDIGTAVLPRAEVKIFLIASVEERAKRRYKENIQKGINTPLEELQLEIEA RDYKDSHRKISPLTKADDATEIDTTALSIEKVVSEIAKVINLKLNLN >gi|238617813|gb|GG669608.1| GENE 275 292552 - 293793 2069 413 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227510313|ref|ZP_03940362.1| 30S ribosomal protein S1 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 413 1 413 413 801 100 0.0 MSENANNDKNDLLNALNSVSEVNVGDVVTGEVLAKDDEQQLIVGIDDTGVEGVVPQRELS SSQNFDDIKQGDKLQLVVTSRIGSDKEGGSFLLSSRRLEARKVWDELAEKSKNGETITAT VSQAVKGGLVVDAGVRGFIPASMISDHYVEDLNQFKNQELELKIIEIDPVANRLILSHKA ILQAQKAEEREKLMDTLHEGDIVEGKVARLTNFGAFVDLGGMDGLVHVSQIAYERVEKPS DVLKVGQEVKVKVLSVDFDRNRISLSIKQTLPEPWDGIEEKAPAGSVLEGTVKRLVDFGA FVEVFPGVEGLVHISQIAHEHIATPGDVLKVGEKIKVKVLDVDPDRKRLALSIKALTDKP KESSSSSKSSNRRPSTNVDNNSRNNAPDEETGFTFGDIIGNELKKNSDDDNNN >gi|238617813|gb|GG669608.1| GENE 276 293900 - 295207 1251 435 aa, chain + ## HITS:1 COG:SP1709 KEGG:ns NR:ns ## COG: SP1709 COG1160 # Protein_GI_number: 15901543 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 1 435 1 436 436 597 68.0 1e-170 MAMPTVAFIGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTHAEWLANEFAMIDTGG IQISDAPFNTQIKNQAEIAIEEADVIVFIVSAKEGLTSDDEQVAKILYRSDKPVVLAVNK ADNPDAREDIYDFYALGFGDPMPISGVHGTGIGDLLDKIVEKFPKETGNVPNDDIRFSII GRPNVGKSSLVNAILGENRVIVSDVAGTTRDAIDTRFEADNIKFTMVDTAGIRKRGKVYE NTERYSVMRAMKAIDQSDVILFVINAEEGIREQDKKVAGYAHEAGKAIITVVNKWDMLKK TNHTQQDFETLIRNEFQYMAYSPIIFVSAKTKQRIEQLPALIKRVYDNHEKRVQSSALND VIMDAVAVHPTPTVNGKRLRIYYATQVVSGPPTFVVFVNNPDLMHFSYVRFLENQIRDNF DFSGTPIRIIKRSRK >gi|238617813|gb|GG669608.1| GENE 277 295589 - 295864 176 91 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] # 4 91 6 93 96 72 37 4e-11 MANKAELVTNVATETGLTKKDATAAVDAVFDSIQASLAKGEKVQLIGFGNFEVRQRAARK GRNPQTGQEIQIPASKVPAFKPGKALKDAVK >gi|238617813|gb|GG669608.1| GENE 278 295941 - 297209 1139 422 aa, chain + ## HITS:1 COG:lin2036 KEGG:ns NR:ns ## COG: lin2036 COG0457 # Protein_GI_number: 16801102 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Listeria innocua # 1 415 1 417 417 229 34.0 6e-60 MSYSQTALDQLERGQLDEFEQSFKKALTNDSDDILYSLAEELYSLGFSNYSKTIYEQLLT KFPGDDSIKINLAELAIDVDNDDLALNYLSQISEQSAEYVRSLMVSADLYQTQGLFDVSE QKLLEAQRIEPDEPVISFALAEFYFNTRNYRKAINLYLDLIKSGTLELSAVNLVERLGVS YAEIGKFEQALGYLEQIKPVHMNSDVKFELAFTYFNLKDYQKAVKAFTDLRDSDPQYSSL YPYLADSYVELKQTDHALKTIQEGISIDQFNEKIWQKAGQIATMAGEDELALRYLKKGHE IAPEDMEILSLLSDWYIIHEQYKDNLKLLEPLEEDHVFDAHLAYNLAQSYQDVGEFKKAA NNYELASHELNDNPEFLKHAALFYRENGHVKEERRYLKHYLVLVPNDMEMASMYEEDENE DY >gi|238617813|gb|GG669608.1| GENE 279 297443 - 298333 822 296 aa, chain - ## HITS:1 COG:lin2023 KEGG:ns NR:ns ## COG: lin2023 COG1284 # Protein_GI_number: 16801089 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 16 291 9 284 288 278 51.0 9e-75 MAQKKKKFQLDISVVDLVVIALGSAIYSFGIVFFNIYNHLADGGVTGITLILRALFHMDP AYSTILVNIPLFAIGYRYLGKKDMFYTLYGTAMLSIFLWIWQRVPIEINIQHDLLLAALG AGLFGGFGCGIVYRFGGTTGGVDIVARLFERFKGVQMGKTLLAIDVLVLLSSLIYLDIRQ MAYTLIYVWIFSMIVNFTQQGAYAARGILIISNQSATISEAIMEQLNRGTTFLKAEGGYS RKGKDIVYCVVSPSELHTLKKLVESIDKEAFISVMEVNEAIGEGFTYKRPKKFKIL >gi|238617813|gb|GG669608.1| GENE 280 298498 - 299715 867 405 aa, chain + ## HITS:1 COG:SPy0866 KEGG:ns NR:ns ## COG: SPy0866 COG0617 # Protein_GI_number: 15674894 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Streptococcus pyogenes M1 GAS # 11 390 1 382 397 326 47.0 7e-89 MDGDIVQIKNMPSEFKKALPILRKIEAAGYEAYFVGGSVRDTILQRPIHDVDIATSAYPS EVKGLFKRTADTGIEHGTVMILDHGTGYEVTTFRTESGYQDYRRPDKVTFVRSLKEDLKR RDFTINALALSENGKITDLFGGLNDMSKKIIRAVGDPEERFNEDALRMMRAVRFASQLDF KIEEQTLTGIYDHSELLKKIAVERIHSEFVKMMLGVDAKNGLNLMIKSQLYQFVPDFSEH LTVLQKIVATHFDLDNEVQVWALFTSMFQFNRDQVISFLKRWKTANKIINDVILTTELIF QIKSQKVGNLELYKAGKQNVKNAVTIISNYTDFDSAKLIKAYDQLPITTKKQLNVTGGDL IKRGILNPGPKLGETLGALEKAVVLGKINNQDSELIAAAMALNKE >gi|238617813|gb|GG669608.1| GENE 281 299723 - 301636 1620 637 aa, chain + ## HITS:1 COG:lin1989 KEGG:ns NR:ns ## COG: lin1989 COG0488 # Protein_GI_number: 16801055 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Listeria innocua # 1 636 1 630 630 584 48.0 1e-166 METMRVEGLTKTYGEKTLFDSLDFLINEQDRIGLIGTNGTGKTSLLNAISGHDHDSTGDI ITSKSYTIGYLTQNPELDDRLSIMDAVFSGSQKVYQTIRNYESALDKYSKHPEDQDALKR FTKAEAKMNEDDAWNAQNDVETILSQLKITDYQQKVAELSGGQRRRVGLAQVLIQSPDLL LLDEPTNHLDFDSIEWLEKYLAGYKGALIVVTHDRYFLDRVANKIWELSFGKLYQYEGNY QDYVEQKATRVQGAIESQHKTQQLYKSELAWMKTGAKARSTKQQARINRFNDLKKNVNTL QVDQDVDISLGQTRLGKEVINIKDADLAIDNQTILKNFNLLVQPNERIGISGENGAGKTT LLNVIAGRKKLDSGIIKIGETVKLAYYTQLTEPIPDDKRMITYLSEVGQQVTDKNGQKIS VAELLEQFLFPRFMHGTLIRKLSGGEKRRLYLLKLLMQQPNVLLLDEPTNDLDIATLTVL EDYISKFQGTVITVSHDRYFLDKVADRLLIFKGNGVIEEHRGRFTDYLKAEEAQSVKQTT EKNRAKKKSSPQATEQQEQASQSKKKKLTYAEEIEYSHLEDDIDKLESQKSSVDEQMQQS GDDYDKLADLQQKKDDLDSQIDKKMKRWEYLSDYAES >gi|238617813|gb|GG669608.1| GENE 282 301655 - 302605 671 316 aa, chain + ## HITS:1 COG:lin1988 KEGG:ns NR:ns ## COG: lin1988 COG0207 # Protein_GI_number: 16801054 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Listeria innocua # 6 316 4 314 314 464 68.0 1e-130 MLEDAYLNLEKYVLENGHKKPDRTHTGTISTFGYQMRFDLSKGFPLLTTKKVPFGLIKSE LLWFLRGDTNIKFLLQHKNHIWDEWAFEKYVKSNDYTGPDMTNFSHRAQEDPDFNNLYQE QKKRFCQLVLDDDTFAQKYGDLGLVYGSQWRAWKTSTGETIDQIQNVIDMIKTHPDSRRL IVSAWNPEDVPTMALPPCHTMFQFYVNDGKLSCQLYQRSGDIFLGVPFNIASYALLTSLI ARECHLQPGEFVHTLGDAHIYLNHVEQVKEQLSRKPHDAPQLWLNPEKKHLSDFNMTDIK VKNYDPYPSIKAPVAV >gi|238617813|gb|GG669608.1| GENE 283 302647 - 303135 401 162 aa, chain + ## HITS:1 COG:BS_dfrA KEGG:ns NR:ns ## COG: BS_dfrA COG0262 # Protein_GI_number: 16079240 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Bacillus subtilis # 1 160 1 159 168 145 45.0 4e-35 MISYIWAEDENGLIGASGNLPWHLPDDMAFFKKTTMGHPIISGARTFRSYNRPLPGRQNI VLSRHGDFPDGVLVISSVEQLCELVDKNPKENYFVTGGANLFGQLLDKADRLYRTKIHHQ FTGDTYMPEIKYAQFNQLTSIDGIVDERNRYPHTFEVFERIR >gi|238617813|gb|GG669608.1| GENE 284 303242 - 304090 640 282 aa, chain + ## HITS:1 COG:SP1112 KEGG:ns NR:ns ## COG: SP1112 COG1307 # Protein_GI_number: 15900979 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 276 1 274 279 224 44.0 1e-58 MANVKIVTDSSAQLTDDEISKYGITVVPLTVMIDNTVYVERDTINNETFVPKMLAAKDLP KTSQPPVGKFVETFNKLGEDGSQILCLNMLEAISGTIHAAEQAATISTSDVTVVDSQSTD RGLAFQVLEAAELAQQGADMQTILNKIAKVRENTRLYLCVMTLDNIVKGGRLHPVAGAIT NFLNIKLGLQVTGGKLKIVSKGRGDKSLRKFFGRILEDMKNTPALKKIGISYVTETNVLK ETMTKLKEEFPDVPLLYRVTSPIISTHTGEGAFALIYYSDPD >gi|238617813|gb|GG669608.1| GENE 285 304202 - 305113 588 303 aa, chain + ## HITS:1 COG:L99502 KEGG:ns NR:ns ## COG: L99502 COG2755 # Protein_GI_number: 15672481 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Lactococcus lactis # 43 296 55 287 288 151 35.0 1e-36 MKHQKKRSKSKLIIWSILILIFVTVGGFWAVGHFDSKQPTKPKTVRLTAIGDSLTYGVGD PSGKGGYTNLIRKKVNRSQHNVVMTTSNFGISGETTDQINHRVITSKKLQASIKQADVIT VTTGGNDMLHFLKGNIGIQNDKLLSQQLKKYSLVYQKRVTRLLESIRHLNKHVQLFVFGI YNPVYVYFPQVSFISRSIQVNNQITKRVVLGQSNVHFIPIDKKLSDGQYQTAQSRTKLRK QATVFNHSDMAAGELEKMLGGQSTESNKYLSDEDHFHPNKLGYGIMTNLLYKEMRQYLNW LKE >gi|238617813|gb|GG669608.1| GENE 286 305170 - 305748 359 192 aa, chain + ## HITS:1 COG:BS_ypmS KEGG:ns NR:ns ## COG: BS_ypmS COG4698 # Protein_GI_number: 16079232 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 188 8 187 187 80 32.0 2e-15 MAFFTIIGLIVIGFCGFFIAIHLSSNETISTKQPTTSDERSVSVSLNKAQLNNLSQYYLN KVQTQNNGQAKYHFEVANQGIVYGSIKLLGSDVDYSMFFTPKVLANGNVELHATKMSLGK FPVPISFVLLNVKHAYKLPKWVKLIPDKKMIKLDIVHMNGNRGLNYRARQINLNGQGKFA FDIILPKEAQGD >gi|238617813|gb|GG669608.1| GENE 287 305750 - 305968 201 72 aa, chain + ## HITS:1 COG:lin1971 KEGG:ns NR:ns ## COG: lin1971 COG4479 # Protein_GI_number: 16801037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 71 1 71 77 69 52.0 1e-12 MLKTFYQFLMTKRNPGSSEPIAEFANNAFYDQSFPKQLTDFDALSKYLEENADYLPSMEI FDDVWKQYEEDM >gi|238617813|gb|GG669608.1| GENE 288 305982 - 306854 717 290 aa, chain + ## HITS:1 COG:SP1155 KEGG:ns NR:ns ## COG: SP1155 COG1161 # Protein_GI_number: 15901020 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 4 286 3 283 283 283 46.0 4e-76 MAVTIQWFPGHMAKAIRQFEENIGLVDIVFEIIDARIPYASQNPEVARITGEKPHLFILT KKDLADPRLTQRWLDSFKSKGQPAIAVDAKTKFNIGNVLSVISPLLSEKLAREEQRGMKK RPIRAISVGVPNVGKSTVLNRLVNRRAAQVGNRPGVTKGQQWLKAGKELELLDTPGILWP KFESQEIANKLALTGAIKDSVFASDDIALFGLNHFRETNPGQLKERYRLSDSDFDLSDVD LLLAITEKIGMRDDYERASNRIIQDIRGNKLGRFTLDNPEEVNQNDETNH >gi|238617813|gb|GG669608.1| GENE 289 306835 - 307602 690 255 aa, chain + ## HITS:1 COG:SP1156 KEGG:ns NR:ns ## COG: SP1156 COG0164 # Protein_GI_number: 15901021 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Streptococcus pneumoniae TIGR4 # 5 255 3 253 259 240 47.0 2e-63 MTKQTINQIKEKLALINDLDDTVFKTLSDDPRKGVQHLLQTATARIKKRQLEKAEFQSRF KYERSFWHRGVNYVAGVDEVGRGPLAGPVVACATILPRDFDLIQVNDSKQLTPEIRARLA PQIKREAISIGLGLVDNKGIDRLNIYEATRVAMKQAVNNLTQQPDEIIVDAMQIAVPIHQ TRLIKGDAKSISVSAASIVAKVYRDTLMDQYAQQYPEYDFKHNAGYGTAKHLSALKKYGA TPIHRKTFAPVKNFL >gi|238617813|gb|GG669608.1| GENE 290 307651 - 308526 373 291 aa, chain + ## HITS:1 COG:SP1266 KEGG:ns NR:ns ## COG: SP1266 COG0758 # Protein_GI_number: 15901126 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Streptococcus pneumoniae TIGR4 # 47 289 44 284 286 197 45.0 1e-50 MFLRDFLLRIHLCNGIGIVGKSKIYDWIQSQKSARFDVPSVDSLIKIANIRGKNVTRFSS TYIQLMNHSDRVDQLVDSEKWLCICDEHYPYQLKEAYTPPLVMFYRGDLNLLSEQMLGIV GARDATHYSMEILKQLLPGPLLNKLVIVSGLAKGVDTWAHQCAIANHGRTIAVIGTGLNI AYPSMNQQLQQQIAEEQLLLSEYPNGSRGYKNHFPERNRIIAGLVESVLVTEAKHHSGSL ITANLALQNNRNVLAVPGRINHYLSAGTNELIAAGAKPILQSNDVLEEYIS >gi|238617813|gb|GG669608.1| GENE 291 308623 - 310755 1289 710 aa, chain + ## HITS:1 COG:SPy1164_1 KEGG:ns NR:ns ## COG: SPy1164_1 COG0550 # Protein_GI_number: 15675140 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Streptococcus pyogenes M1 GAS # 27 592 27 589 589 734 64.0 0 MATSTKSKPKAKPKVKARAKRRLPKKNLVIVESPAKARTIEKYLGHSYKVVASKGHVRDL PKSKMGVDIENDYEPHYISIRGKGDTIKELRSAAKKAKKVYLAADPDREGESIAWHLSHI LDLDPNDDNRVVFHEITKDAVKESFKHPRNIDMDLVDAQQARRILDRLVGYSISPLLWQK VKKGLSAGRVQSIALWLIIKREKEIENFKPQEYWSIDSEFKKGRSKFKASFYGIKGKKKD LPNNDAVQDILKQLDPKADFDITKVVRRERKRQPQPPFTTSTLQQEANRKLNYRTRKTMM AAQQLYEGINIGKEGSQGLITYMRTDSTRIATIAKHEASTFLHEKYGAEYAATKPIKGKL PEGAQDAHEAIRPTSVFRTPQSLKQYLTRDQFRLYQLIWSRFVASQMTPALMDTMAVTIE QNNVTYKANGSKMKFDGFLKIYGDGKEKDNLLPDLETGDKVKLISNKPDQHFTQPPARFS EATLIKALEENGVGRPSTYSPTLETIQRRYYVKLVGRRFEPTELGEIVNKIIVEYFPDIV NIDFTANLEDKLDDVEEGKENWIRLVDTFYKPFSSEVESATENMEKVQIKDEPAGFNCDI CGAPMVIKMGRYGKFYACSRFPDCRNTKAIVKKIGVTCPKCHIGEVIERKSKKNRIFYGC SRFPDCDFVSWDKPIGRNCPKDGHFLVEKKVKGGTQVVCPNGDYEEPAQK >gi|238617813|gb|GG669608.1| GENE 292 310906 - 312327 1147 473 aa, chain + ## HITS:1 COG:SPy0713 KEGG:ns NR:ns ## COG: SPy0713 COG4690 # Protein_GI_number: 15674771 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Streptococcus pyogenes M1 GAS # 8 468 9 468 472 473 50.0 1e-133 MDHTTHSTCTTILVGKNASYDGSTIIARNEDAGVAVNPKKFVVVQPEDQPRNYQSKLSKF SIKLPDNPVRYTSVPDATPEKGIWGEAGVNAHNVAMSATETITTNPRILGADPLVKNGLG EEDLLTITLPYIKSAKAGVERVGSLLEKYGTYESNGIIFSDVNDIWYMETAGGHHWVAQR IPDDSYVIAPNQTGIQEIDFDDPDHFMYASDLKNFVEQHHLNLSDNFNFRKIFGSDTQLD HHYNTPRAWYGQRYFNPETVKDKSPMSHDLSFICHANRKITIENIKFVLSSHYQDTPYDP FTPGNDSQKMPFRPIGFNRNQELSVIQLRPYVPSDYSAIQWLAFAANPSNTLVPFFTNVQ DTPDCYRDTTKIVDSQNAYWVNRLISLIAADHYHAVMDDIEAYQDQLMGYGHKRITHIDN KVEGLSGSKLTASLQAANEKTADHVVKATRKLLTTMLTKTSNGVAGSFDRKHY >gi|238617813|gb|GG669608.1| GENE 293 312393 - 313832 1387 479 aa, chain - ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 2 462 3 459 474 356 41.0 5e-98 MIPTKYYSACTSMIVGKNASIDGSIMIARNEDSKSSWPKNYVIHARKDFSNPQNFSSNDN GFKMPLPKMRAKYSATPEWTDKFGLFEENGFNEYGVAMSATESTYTNDLALGADPLEKDG IGEEAMVTVVLPYVKTAREGVARLGQIVEHYGTSESNGILFADQDEAWYMETGGGHRWVA QRIPDDSYAVIANQSAIQEIDFDDPDHFMWSTDLRQFVEANHLNPDSTGKTFNFRKIFGT ADLSDTYYNTPRVWYGLKLFSPKLDVEPTSQEMPFINQANRKLSVFDVQDFLSSHYQGTP YDPIGEGSEDDKHRFRPISLAKTQEAHILQIRPSMPVGLAGIQWLAMGVAAQSTFVPFYA GASDTPTAYHNAHGSYAPDEAYWTYKLAGVLVDPHYVQLSPKLNDTKAALRVKLQQAVKQ TDAVALAAQLNGPELDNYLTKVNFKNSEISLNAYNKLISELVTASTDLSPINFKQDVNL >gi|238617813|gb|GG669608.1| GENE 294 313997 - 314185 291 62 aa, chain + ## HITS:1 COG:lin2709 KEGG:ns NR:ns ## COG: lin2709 COG1942 # Protein_GI_number: 16801770 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Listeria innocua # 1 60 1 60 61 67 60.0 6e-12 MPIVNIQLIAGRSQDQLKALVADVTAAVVKDTGAPAEHVHVILDEMQKNRYSVGGVLKSD EK >gi|238617813|gb|GG669608.1| GENE 295 314432 - 315943 1351 503 aa, chain + ## HITS:1 COG:L0014 KEGG:ns NR:ns ## COG: L0014 COG0554 # Protein_GI_number: 15673228 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Lactococcus lactis # 1 497 1 497 498 707 67.0 0 MDDQQYIMAIDEGTTSTRAILFNSNGEIVGKAQREFHQYFPKSGWVEHDANEIWNAVQSV ISEALINAEVPPYKVRGIGVTNQRETTVIWDKNTGEPIYHAIVWQSKQTADLANQLKTDG YDDLIHEKTGLIIDSYFSATKIQWLLDHVEGARQRAENGELLFGTIDTWILWKLTGGKVH ATDYTNASRTMLFNIHTLEWDKDILKLLNIPESILPEVHSSSEIYGYTAGYTFSGVQVPI AGIAGDQQAALFGQMAYQRGMIKNTYGTGAFIVMNTGDQPTLSKRGLLTTIAYGINGKVT YALEGSIFVAGSAIQWLRDGMKMVANSPESEQMAIDAKSSDGVYVVPAFTGLGAPYWDQE ARGAVFGLTRGTTKEQFVRATLESLAYQSRDVIDTMISETGLDLKTLAVDGGAANNNYLM QFQADILGTPIRRAAISETTALGAAYLAGLAVGFWNSLDDIKKTAKARDAFDPKMNVDVR DDLYTGWQRAVHATIQFHPTENN >gi|238617813|gb|GG669608.1| GENE 296 316033 - 316839 670 268 aa, chain - ## HITS:1 COG:L173313 KEGG:ns NR:ns ## COG: L173313 COG0561 # Protein_GI_number: 15673714 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Lactococcus lactis # 1 260 9 270 278 176 39.0 6e-44 MIALDLDGTTLNDDAQLSSRTQSVINQAVKEGCVVSIVTGRPNRLSESFYDDLHLNTPMI NFNGNLGILPHKNWEREYQYTIDKEIVMELLSNSRKLGLNLIAVEGRDLFLANRGISSGF GFFPSTLQSNQILNQKSLKDNPISITVQVEQPGQKQALMDYVLHHFGDQVEVSPWGGPHP IVEIATKGIHKSTGLKFLADYYGILQKDIIAFGDEANDATMMKYAGTGVAMKNAIDSIKK SADEVTQYTNDQDGVARYLEDYLNLAVG >gi|238617813|gb|GG669608.1| GENE 297 317039 - 318442 754 467 aa, chain + ## HITS:1 COG:SP1402_1 KEGG:ns NR:ns ## COG: SP1402_1 COG0144 # Protein_GI_number: 15901256 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pneumoniae TIGR4 # 1 292 1 280 280 308 50.0 1e-83 MQLPDDFKNKYTKLLGQQEALQFLASFSKTANHGFRLNPLKQNQPVNIDLSHPTAHCQLG YYGDVSGKTVAHQSGAVYSQEPSAMYVGEVAAPKAGERVLDLCAAPGGKTTHVGSYMANS GLLIANEIDHKRSKVLMENVERFGLTNTIVTNSTPEIIAKQLPNFFDRILVDAPCSGEGM FRKDPDAVSYWSLGYPEECATRQRQILSETVKNLKHGGELIYSTCTFAPEEDEQIIAWLV KQYHFDILPVKKFPGMDNGRPDWADGNPDLVNCVRIFPNHFNGEGHFIAKLKKPEESSSP IPHPSKQKKRRQRDTKNTTTLSADQRTLWENFAAEMLKTLPIGNLRTFKETLYSVPLETP DLGKIKIVRDGLQLGFFKKNRFEPSYALALALRPDTAKRVIDISTDDWKKYVHGDTFTVN KELKKGWYLLACEGQSIGFSKIVNGTAKNFFPKGLRFQPTSSINDAK >gi|238617813|gb|GG669608.1| GENE 298 318524 - 319285 506 253 aa, chain - ## HITS:1 COG:CC3385 KEGG:ns NR:ns ## COG: CC3385 COG3022 # Protein_GI_number: 16127615 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Caulobacter vibrioides # 1 244 1 250 255 131 36.0 9e-31 MKLIISPAKKMVTNLNDFEVKDLPIYLRASQKLLKAMQELTYADAQALWHTSDKLTKTNY DQLQKMELTSRLTPAVLSFTGIQYQYMAPDILTAPALNYIQENLRILSGLYGILKPFDGV VPYRLEMQAHIPLVGMKNLYSFWGDRLYQSLNINKEPIINLASREYSKAIIPFLKPNDIF IDVVFGHLVNGQLKTRATLAKMARGEMVRFIAENQLTMVEDIKRFDSPNYVFDLKRSTAK KLVFIEKTNRSNK >gi|238617813|gb|GG669608.1| GENE 299 319473 - 320504 869 343 aa, chain - ## HITS:1 COG:SA2136 KEGG:ns NR:ns ## COG: SA2136 COG1304 # Protein_GI_number: 15927926 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Staphylococcus aureus N315 # 4 341 5 344 349 313 46.0 3e-85 MISKHSHRKDEHISLAEKFYQDTDVFAPLRFVHQSLPKYALSEIDLSTKIGPLNLQIPFY IEAISGGSPHTRDINQKLATIAKKTGLAMAVGSQSVALSDTSLVETFTVAREVNPDGLLF ANIGANKTVNDARHAVAMIDADALELHVNPAQELIMPEGDRQFNFLTNIKQIVEGLSVPV IVKEVGFGMSRETIQQLIDLGVGYVNVSGQGGTNFAEIENFRRRDKEMAYLKDWGLTTPE SLMESRPFQDRLTVLASGGVKSPLDIAKCLALGSHAVGVAGTFLHLVIHENIDEVIRVIE QWQYGLKTIMMLTNSKNITELQKKKLILPPSLASYLEQRHLTY >gi|238617813|gb|GG669608.1| GENE 300 320501 - 321592 686 363 aa, chain - ## HITS:1 COG:SA0549 KEGG:ns NR:ns ## COG: SA0549 COG1577 # Protein_GI_number: 15926270 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 1 353 1 355 358 302 42.0 8e-82 MITAKAPGKLYIAGEYAVVETGYPSIIVALDQFVTVEISRSKSFGSIVSKQYREDSVFWR RQGDQMILDNRDNTFNYIISAIRLTEEYAKTLGRRMEVYDLRVNSDLDSPNGKKYGLGSS AAVTVATVKALCEFYQIPLTKSKLFKLSAIAHLDVQGNGSLGDVAASVYGGWIAYQSFDR NWLMAAHRQQSLTELVDQPWPDLTITQLTPPENLRLIIGWTGSPASTSHLVDKVAISKSR QHETYNQFLIDSKKCLNDLIDGFKNGSLSTIQAGIQKNREILKRLAEFSKVQIETPTLKK MCDIAVAHSAAAKSSGAGGGDCGIVVIDKNQNIKSLIKRWEENGITRLSLRVHPVIDLAK ETK >gi|238617813|gb|GG669608.1| GENE 301 321613 - 322599 626 328 aa, chain - ## HITS:1 COG:SA0548 KEGG:ns NR:ns ## COG: SA0548 COG3407 # Protein_GI_number: 15926269 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Staphylococcus aureus N315 # 11 303 7 300 327 253 47.0 3e-67 MATLSNNPVTARAHTNIALIKYWGKKDESLIIPYTSSLSLTLDHFYTDTTVWFDESLSTD QIIIDGQIPSEKSRQRVHDFLEIVRGKAQIAIPASISSTNHVPTAAGLASSASAFAALAA SASEAAGLHLDATELSKLARRGSGSACRSVFGHFVEWQRGTNDADSYAKPLPDSGLNDIR VVALTVERGQKAVSSRQGMHLSVTTSPYYPAWVKTCQADLLQLKSAIEKGDFTRFGKISE LNAMRMHALTLSADPSFTYFNGQTLAIMNLVKQLRHQGTECYYTIDAGPNVKVLCQQSTV AKISATFAQVLGDQNVIIAKPGPGVQYL >gi|238617813|gb|GG669608.1| GENE 302 322580 - 323557 648 325 aa, chain - ## HITS:1 COG:L7866 KEGG:ns NR:ns ## COG: L7866 COG1577 # Protein_GI_number: 15672386 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Lactococcus lactis # 9 309 11 310 310 248 42.0 9e-66 MKENAKAKSYAKIIWFGEHSVVYGKPAIALPLYNVDVHTSIKTDVTGQTINCRYFDGPIS KMADNLKGVSVLIHELLTIFNATDLNFHLEIDSKIPSERGMGSSAATAVAIVRVFFKLFE TPLTRDRLLGLADVEEKITHGNPSGLDTATASSDTPVWFIRNEINEQIDFNLSKSSLVIA DSGIKGKTGEAVSMVHDNLLDQPEFAKPLIDQLGQIAKDARQALQISDEQRLGRLMTQSQ YNLSKLGVSTRKLDDFCRIAIQNGALGAKLTGSGLGGCMISIVENQVDAQRVATELLKAG ATQTWIQSFTNYEFSIGDNNGNLVK >gi|238617813|gb|GG669608.1| GENE 303 323874 - 326711 1725 945 aa, chain + ## HITS:1 COG:lin2013_2 KEGG:ns NR:ns ## COG: lin2013_2 COG1199 # Protein_GI_number: 16801079 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Listeria innocua # 262 942 1 666 668 301 31.0 4e-81 MNSKTTYAVVDIETTGTDMSVDNRIIQFSCTLVAHGKIVETYVSDINPQREVPERIIQLT GITPERLKKAPTFDQVSSKLYKLLSGTVFVAHNVNFDFPFLNGEFQRVGYPELDIEAIDT VTLSQILLPTLSSYRLQDLSAYFNIIHNHPHTADSDALATAKLLLILLRQVKMLPRRTLE QIIQINPSLPLDTMKVFIQVNDENRSESLAEKLPDQLKLSAGLVLRKREPILNEPQSKTA EAKFPKTRTAKSKILPPHLESRIEQNKMMNMIYNNYASDGHHPAKPLVIEAPTGIGKSLG YSLPFSYLASAQKPVVISTATTYLQFQLQNQTLPLLNQSLPFKINSVILKGASHYIDLNK FRHLLFVADSSVQTAFIKAQILVWLTMTTTGDLDELHLNVEQTPFVWTIQHSGVKWLDAN SPFYDEDFLRYNLKKAQNADFIIVNHSYLLKNWQFFSDFPVKPYLLIDETQQFAETAIRN NQKQINPLAVMSAVNRVRGDIQEGHHGSARDAFSGNSVLNNSADDLDETLNQIKSLLKQL THRLYSQMIANQQLHKNASFFVRLIPISDLKAIINENRETITRLQDKQSEVEDLLIRLNS EIDHSTDAFTNRDYSSIYDLYEDFNEFAEKLTFLLSIIDMDESAINQNVVWVTVNHVKDI NSFTINQGILKTEDYLNHRIYASFEPPTFTGATIFSSRRSQFIFNLLGIDRKAASVRRLQ SDFDPKNQARIYLIDKQSKEHFITNSDDYLQQVAQSIKKIYQASPRQTLVLFNSLKAIEK THQFLSKDGFTATHLVLAQGVNGTAARLSKQFIHSEPAILLGANTFWEGVDFPAHLLENL IIAQLPFDTPEDPYNHALYSVERSKGKNPFYSLALPKATLRLRQGMGRLLRTKADYGTIF VLDPRLTTKRYGQTILTNLKNEIPVMTGQLDDCINDMVKFFESRN >gi|238617813|gb|GG669608.1| GENE 304 326847 - 327353 488 168 aa, chain + ## HITS:1 COG:lin2012 KEGG:ns NR:ns ## COG: lin2012 COG5353 # Protein_GI_number: 16801078 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 31 168 34 173 173 76 32.0 2e-14 MQRERRIKRDPKVKLRWIIILLIFILGFTTFIIIHQAEKPMATARSQTISIAKKYADLKS ANTFYSANLGKTYYSIAGKTNKNKPVYVIVAKKGGNVTVVNQRAGLSETQIRNRIQQLKR PKKINNVGLTLINNKPYWVISYINSSNNLCFATLNFKSGSVKKLIENI >gi|238617813|gb|GG669608.1| GENE 305 327380 - 328600 953 406 aa, chain + ## HITS:1 COG:SP1544 KEGG:ns NR:ns ## COG: SP1544 COG0436 # Protein_GI_number: 15901387 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 389 1 390 395 384 49.0 1e-106 MKFSNRAMQVKPSATVGVSNRAKAMIRNGIDVINLGIGEPDFTTPKVIAAAAIDAIQHGK TSFYTPASGLPELKRAIADRIQADYHVNYAPEQISVANGAKMALYVIMQALVDNGDEVLM PKPSWVSYGQQVSLAGGTPILVDTNAEFKITTDSLNRVVNDHTRLLVINSPQNPTGTVYS KAELQTIGQWAVDHHILLIADDIYGKLVYNETKFYSLIQCGKQIAESTILVNGVSKAYSM TGWRIGYVAAVPEIISKINAILSHSTGNPATVSQYAAIAAFRSDQTEVETMRQAFEKRLN TIYPLLQQVPGFHIEQKPEGAFYLFPNVEEAMNIVGVDTSSQLVELLLNEAHVAVVDGGA FGMPGYLRLSYATGMEDLKIAVKRINTFMTHYLEKKVSGGISIETN >gi|238617813|gb|GG669608.1| GENE 306 328602 - 329882 1185 426 aa, chain + ## HITS:1 COG:lin2010 KEGG:ns NR:ns ## COG: lin2010 COG0017 # Protein_GI_number: 16801076 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Listeria innocua # 4 426 8 430 430 601 66.0 1e-172 MIDAPKYVNEKVKIGVWLTNKRSSGKIAFLQLRDGTAYFQGVVVKNNVSEETFELAKEVK QETSMWITGIIHEDNRSHFGYEIEVESIEVVSESHEYPITPKEHGVDFLMDHRHLWLRSS RPHAVMRIRNEVIKATYDFFNDEGFIKIDAPILTGSAPEGTTDLFHTTYFDKDAYLSQSG QLYEEAGAEAFGKVFSFGPTFRAEKSKTRRHLIEFWMIEPEMAFMHQEESLDIQERYIAY LVQRVIDNCQMELKTLGRDIETLKKYTILPYPRISYDEAIDLLKKNDFDLDWGVDFGSPE ETFLADQFDQPVFVLNYPKAIKPFYMKPHPTRDDVVICADLLAPEGYGEIIGGSERAVDY DYLYDQIVKAGLDPKEYSWYLDLRKYGSVPHSGFGLGLERALTWITGEDHVREAIAFPRL LNRIYP >gi|238617813|gb|GG669608.1| GENE 307 329994 - 330638 508 214 aa, chain + ## HITS:1 COG:lin2009 KEGG:ns NR:ns ## COG: lin2009 COG3935 # Protein_GI_number: 16801075 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Listeria innocua # 23 206 52 232 239 78 31.0 1e-14 MSNEELLLYILIKRNRTLIVPMPEIDGLTALTGYSKQQLFEIFHQMIQKKLAKITQVNVD NQQVDAYDFNSLYEKLSLVEQADSTDTSEEKEPIPSTEPQVSDQQRQEMFESIEKEFGRT LSPLEMESISQWIDLDHYSPKMVELALKEAVLSQVYNLKYMDRILRNWEKRHLKTAQQIE EYNRNRTRNNSETEEPYKGPKIPFVDITNPNKDK >gi|238617813|gb|GG669608.1| GENE 308 330697 - 332922 1731 741 aa, chain - ## HITS:1 COG:SP0369 KEGG:ns NR:ns ## COG: SP0369 COG0744 # Protein_GI_number: 15900292 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 1 607 26 637 719 460 44.0 1e-129 MFGAGLFAYYASSSPRITQSALSSDNSTQIYDTNGKVISRLGSQNRDYVKSNKIPGTLKQ AVVSIEDRRFYKHHGVDPIRIVGAALSNLTGSSLGMQGGSTLTQQLVKLSVFSTAASDRT LKRKAQEAWLAIQVENRYSKSQILEFYINKVYMGNGVYGMQTGAEFYYNKTLGHLTLPQL ALLAGMPQSPKYYNPYIYPKYATERRNEVLNAMVKNKAITSAQAQRAKNTSVKSGLAKTH TQTSGSAKTSKYIDSYLKQTLEELKAKGYKANSGLKVYTNLNMNAQKKLYKVSNNDPSIV YPNNRFQVGATLVNVNNGKVMAMQGSRKTKVAFGLNRAVQTGRSSGSTAKPIMDYGPAIE YLKYPTYQPVKDTPYVYPGTDKNVMDFDDKYQGTITMRKAIVESRNIPAIRTLENVGISK ATTFLKKLGMPFKKTLSLQNGIGLYISSEQLAASYAAFSNGGTYYKPYIINRIVQANGVT KRFHPKGKRAMSPATAFMITNMLKGVMTDSDGSGTTAKISGLYEAGKTGTTQYPDDYLNK VPANSSMDAWFSGYTKNYALAIWTGYDHQFKANSYITQPQSEISQQIYKSVMSYVSQNKP NSDWTQPSDVVATNRGGNTEYYVAGYPGTVTDNTTTAAGSYSVESSSSSNGTITTSPRSN EENRGSSTESSQTAPTTQQPSGSGSSSGDGTDNSSSSTSSSSTDNNPGTGSSSDGGGSTS DSSNNQDSNSPDSNNNDVNDQ >gi|238617813|gb|GG669608.1| GENE 309 333068 - 333667 485 199 aa, chain - ## HITS:1 COG:BH1703 KEGG:ns NR:ns ## COG: BH1703 COG3331 # Protein_GI_number: 15614266 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Bacillus halodurans # 1 197 1 196 199 210 52.0 2e-54 MTIKYPDGHQFHRQSGFEQSHNDSIDFSNRGMTLEAELNESNKFYLNNEIAVIHKKPTPI QIVSVDYPKRSAARIKEAYFRKASTTDYNGVYQGHYIDFDAKETKNKTSFPLKNFHKHQV EHMRECLKQRGICFAIIKFVNDQSVFLLKATDLIDYWDQQQVGGRKSIPRKTIEEIGVAV PYQINPLLPYLRAVDSIIE >gi|238617813|gb|GG669608.1| GENE 310 333780 - 334364 311 194 aa, chain + ## HITS:1 COG:BS_ypsA KEGG:ns NR:ns ## COG: BS_ypsA COG4474 # Protein_GI_number: 16079277 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 8 182 4 177 180 120 36.0 1e-27 MGDIVSRLWITGYRSYELGMFKDDDPKRKVIDYVLTNELRQAIINGTDWIISGGQLGVEQ WALEAANHLKSEYPDEFQTSMMLPFAEFGNNWNEKNQLKLQKLRQSVDFSASVSQQPYHS PQQLRNYQEFMLNHTDQVIMIYDLDNPGKSQYDFDKIKKFADSHPYPYRLITFDDLQNAA DEYQENQNNSFQDD >gi|238617813|gb|GG669608.1| GENE 311 334421 - 334807 350 128 aa, chain + ## HITS:1 COG:lin2002 KEGG:ns NR:ns ## COG: lin2002 COG3599 # Protein_GI_number: 16801068 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Listeria innocua # 7 119 11 110 113 91 48.0 4e-19 MENINYTPKDILQKEFRQKMRGYDPNDVDSFLDNIIKDYEAFNKQLQELSDENDRLKVQV DELNKQLAVSGNQPMPTTGAANPTPSRQTASQPMSSATNMDILKRLSNLERRVFGSQLDS GSNESHRL >gi|238617813|gb|GG669608.1| GENE 312 335467 - 336618 771 383 aa, chain + ## HITS:1 COG:SPy1644 KEGG:ns NR:ns ## COG: SPy1644 COG0116 # Protein_GI_number: 15675517 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Streptococcus pyogenes M1 GAS # 3 375 5 380 384 466 58.0 1e-131 MKFNLVATCAAGIEALVGKELRNLGYDTQVENGRVRFSGDEKDIIKTNLWLRTADRIKII VDEFDAQTFDDLFEATAANQWDKLLPMDAEFPVEGRSRNSKLHSVPDVQAIVKKAIVNSL STSYHRHTRLPETGAKFPLEIAINKDRAMLTLDTTGSSLFKRGYRVEKGPAPLKENMAAA LILLTSWYPDMPFIDPMCGSGTIPIEAALIGRNIAPGFNRDFICEKWPWIDADMVQNVRD EADSKADYDRELDISASDIDGNMVEISKRNAEEVGLLDDIHFKQLAVADFKTDKVNGVMI ANPPYGERMSEKDQVHDLYKQMGKAFKPLSSWSKYFLTSDLEFEKYYGEKATKRRKLYNG ALRTDYFQYWGKKVRNMNSLSNY >gi|238617813|gb|GG669608.1| GENE 313 336678 - 337790 659 370 aa, chain + ## HITS:1 COG:SP1608 KEGG:ns NR:ns ## COG: SP1608 COG0665 # Protein_GI_number: 15901448 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Streptococcus pneumoniae TIGR4 # 3 369 2 361 367 264 41.0 2e-70 MQKRIAVIGGGIIGATAAFYLGYLDQTQSLSVTLFDDDLGQATKAASGIISPWLSKRRNK RWYTLAKEGAAFYRKLVTDANLGTNVYQQTGTIVTRKDPNDLDSLFQEAEIKLRHTPAMR SVALLSSQDVGKRLPFLTNPPAGILVEGGAKIDGLHFVEALLDQAQKRHVEISRQRVFFD ESGKLRTSKGLESFDKIIIATGAWMKGTLKPLNYLVKVRPQKGQLIDLTIKSKHYGGHLP VLMPESSSDIIPFEHDKLVVGATHENDGGFDLKPTSEARNRLLTNAKAFDQHLQMDQIDR VRVGTRAYTDDFAPFFGHLPDNPNILLGGGLGSSGLTTGPLIGYFLARAVVEDQLGVWDK YTKPISHYII >gi|238617813|gb|GG669608.1| GENE 314 337783 - 338172 464 129 aa, chain - ## HITS:1 COG:SA1266 KEGG:ns NR:ns ## COG: SA1266 COG0328 # Protein_GI_number: 15927014 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Staphylococcus aureus N315 # 1 127 1 126 133 58 31.0 3e-09 MIKLYTDAAVNQQSGKAAIGILIIQNGHQVQLNQKIVSMDNHHAEFEAAIGGFQKLIGLG IDPAEFVFYYTDSKIVIDSLNKAYAKHFETQTEQLITLQNHFTTVINTWIPDTQNHGAHN LAMQALHAK >gi|238617813|gb|GG669608.1| GENE 315 338210 - 338596 317 128 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1081 NR:ns ## KEGG: Lbuc_1081 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 128 1 128 128 183 82.0 2e-45 MITQKRHFFYQPSPLSSIICWSWTLLIFFIGVIIWLEITHFQWITLFFFVLFAFLTWAEI HFRNIKVYDNQLIVSRITNPHWLVIDLAKISHVTTSKYQLGFVANTKIYSFILPANSVIE VNELISKK >gi|238617813|gb|GG669608.1| GENE 316 338640 - 340307 1640 555 aa, chain + ## HITS:1 COG:lin1990 KEGG:ns NR:ns ## COG: lin1990 COG2759 # Protein_GI_number: 16801056 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Listeria innocua # 2 555 5 560 560 657 59.0 0 MMKSDVEISQEAKMAPITTITDQLGINQDNLEQYGKYKTKVNFNPSDACQDGKLILVTSI NPTAAGEGKTTVTIGLGDAFTELHKNVVLALREPSLGPVMGMKGGATGGGYAQVVPMEDI NLHFTGDFDALTEAHNTLAALIDNHIQHGNQLNIDPRQIVWKRVLDVNDRELRQVVIGLG GRTSGVPRQDGFDITVASELMAILCLATSLQDLKHRISKILIGYTYDRKPVYVSDLHVEG ALTLLLKDAIKPNLVQTLEHTPAFIHGGPFANIAHGCNSILATKAALTYGDYAITEAGFG SDLGAEKFMDIVTPRLNKTPDCVVVVATVRALKLNGGADKKELNVENLDALKKGVINLKR HVEGMQQYGKPVIVAINKFASDSKDELTYLSNYVQNDLKVTGEIINSWAEGGKGAVDLAQ KVIAACDNSDKFHELYDHENSSVLEKMTAIVTRIYGGSTVELSRKAKNELKRIEKMGYGN LPVCMAKTQYSFTDNAKELGAPENFTIHVSDLQLKLGAGFIVALTGKILTMPGLPSHPAA LDMDIDENGRITGLF >gi|238617813|gb|GG669608.1| GENE 317 340322 - 340762 227 146 aa, chain + ## HITS:1 COG:SP0928 KEGG:ns NR:ns ## COG: SP0928 COG0597 # Protein_GI_number: 15900808 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Streptococcus pneumoniae TIGR4 # 4 146 6 149 153 112 47.0 3e-25 MPVIYIIGILLLIGLDQLVKHWVVSTLALGQSSSVVPGVLSITRINNTGAAWSILSGHQL VFVLIAIVAAILIGYFLVRYWPNLWYRFGLSLLLAGTIGNVIDRIVNNHVVDMFQLDFIN FPIFNCADMYLTVGILIIGFAIIKEK >gi|238617813|gb|GG669608.1| GENE 318 340781 - 341692 340 303 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 78 283 82 279 285 135 37 3e-30 MPKKFKITDELGRLDKIVSMLDPEISRSRAKKMIEDGDIIVNDSKKKPKYETKASDTLLI KDVKPETVSIKPENMPLDIVYEDEDVIVVNKPQGMVVHPSAGHPNHTLVNALLFHSPLSS INGEYRPGIVHRIDKDTSGLLMVAKNDMAHKALSKQLKAKKNLRKYVALVHGRIKEDSGV IKAPIARSPKDRKKQAIVADGRPAITHFEVMERFQDYTLIECRLETGRTHQIRVHMQYIG HPIVGDPLYGPKKTIKGHGQFLHAQELGFEHPRTHQLMIFSAPIPEIFEKTLRTLRVNNL LES >gi|238617813|gb|GG669608.1| GENE 319 341783 - 342316 502 177 aa, chain + ## HITS:1 COG:BH2541 KEGG:ns NR:ns ## COG: BH2541 COG2065 # Protein_GI_number: 15615104 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Bacillus halodurans # 1 175 1 175 180 195 57.0 5e-50 MGKIILDKMAMQRALTRITYEIVEKNKGVEDLVLIGIKTRGIFLANRIADRLQQLENVTI PVGELDITNYRDDIEHDSTSSDVKMSNNKIDFSVEGKRVILVDDVLYTGRTVRAALSAVM DLGRPKSINLAVLVDRGHRELPIRADFVGKNIPSSQKEKIKVYVSEIDDKDAVELIK >gi|238617813|gb|GG669608.1| GENE 320 342344 - 343435 709 363 aa, chain + ## HITS:1 COG:SPy0833 KEGG:ns NR:ns ## COG: SPy0833 COG0505 # Protein_GI_number: 15674869 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Streptococcus pyogenes M1 GAS # 1 356 1 356 360 364 50.0 1e-100 MTQRYLILEDGSAYAGKAFGSLATTTGELVANSTMNGYQEIISNQIYHNQIIVFTQTSIG NTGLAQNAYESVLPTAKGVIVREYENLATDHFKRISLDRYLKRHKIPGIYDVDTRQIRRH LQQKGNMKASIVDVADEHAFDQLHATVLTNQQVAQVATPKPYPNPDEGANVIVVDFGLKS GILRELSKRDCNITVVPWNSTSETILDLDPDGVVLSTGPGAPGNLPESVLQMIREVQTQV PLFGIGLGHELFAMANGAKISQLRVEHHGSNHPIREIITNEIFFSGQEQGYAVDSKSIDH AKLFITHIDLVNGTVQGLRHRDYPAFSVQFSPDGAPGPKDSVGLFDDFTEFMARRRDNNG DEY >gi|238617813|gb|GG669608.1| GENE 321 343380 - 345926 1553 848 aa, chain + ## HITS:1 COG:SPy0835 KEGG:ns NR:ns ## COG: SPy0835 COG0458 # Protein_GI_number: 15674870 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Streptococcus pyogenes M1 GAS # 17 638 6 627 1058 423 36.0 1e-118 MISQNLWQEEGTTMATNIKKLLLLGGGPTNIGHENELDAAAYERLSAIKKTGAQVIYVDN NPFSFASEEVQPADVYVQEVNFQNVVNIIEKEKPDAIMPKIGGLNAMQVAWQLEESDVLA NNNIQLVGIRPIDLKKVLDNQQLRELLDETGEPIIASKIVASDDEAMDFVRDVGFPVIVK PLSASHDTSRFICNNTDEMEDALEISFKRTYIKRVSIEQSIVGYKEIEMVAIRDENGNKL LISGLEDMDPIGIHSGDSIIFAPTQTLINQEYQSLRTATFRIMDAINITGTCHIQFAQSR TDSNYFVTKVSPFFTRNALLAAKSTGYPLSYVSTLLEMGYALPEIKLPEKYSKYLPFMEP TMDHVVVRIPLWPFRDIPDVDQHLNTLMKSVGSTIGIGRTVEEAIMKAMHSSQFSPRDIL PSVSKISDDDVINQLIHPLASRILVLMEAIRRGFSIDELSELTKIDRFYFYKMNQLLRAQ DFVINNPLSPTAVEVGHKYGFGDGMLAELWNVNISTIERMNRNSKTKVTFKEVEPSAGEF LEATNVFYSSYELENESQPCVGKTALIIGRGGNQLGPNAAADYYTAQVLDTAHKAGYKTI IMNTNPNAISLAPALSDKQYIEPIQLGNILNIVNLEKPDIIFLPGNRHYLSKKLKEFADL NIVVLPPDQKVAKYNQRKATDAVDLFIDHDRILPITTISFYTNSHRTELRYINDYQQPMN HWQKEEQKLIGLAINKIDTSQWQGLVQVLFNRIDDQSGYQFAGIRPIRITESAFLNKTTG INWIDALVKKYLGILDIDQLSEYYQPGTHKRYAMMEAVFPFKELQSNRKDGTSTQEVGSS LSFKNIES >gi|238617813|gb|GG669608.1| GENE 322 346005 - 347720 1163 571 aa, chain - ## HITS:1 COG:lin1943 KEGG:ns NR:ns ## COG: lin1943 COG1293 # Protein_GI_number: 16801009 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Listeria innocua # 1 563 1 565 570 445 44.0 1e-124 MSFDGSFIHSMKQELADLLQTGRVSRINQPYSNELILTIRAHGKNHQLLLSANPTYARVQ VTKIPYVNPAVPTNFAMIMRKHLNGAILTEVNQLENDRVLHFGFTGRNELGDQTKLNLIV EIMARHSNIVLVNQPDNKIIDAIKHVGSDVNRYRLLLPGATYINPPKQNLQNPFTKTSFD DVKQLIKDYPNVDVLAGSLQKTLQGLGKDTASALANTLHKNTEVEKNFESFFTKFNAAVP TLSHIGNNKINFTAFPYPDTDKNDHYASLSELLDAYFATRAQRDRVREQGAVLIQVVKKQ LKKNRTKLKRLKHDLQETENADEYRIKGEILTTYLNKVDRGMTSIELPNYYENNAPLKIK LSNQQSPSENAQKYFKRYQKLKSAVKFLNEQISLTQEEIDYFENIQSQIELAKPEDLVDI RYELEQGHYLRDHEQHKKKKNKRQKINKPEKFVSTDGTEILVGKNNLQNERLTMHTADKR ETWLHTKNIPGSHVIIRSFDPSQTTIDEAANLAAYFSKAHDSSKVPVDYTKVKNVRKPNG TKPGYVIYDNQQTLLVTPDEKLINKLSQTTK >gi|238617813|gb|GG669608.1| GENE 323 347935 - 348348 275 137 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1089 NR:ns ## KEGG: Lbuc_1089 # Name: not_defined # Def: regulatory protein MarR # Organism: L.buchneri # Pathway: not_defined # 1 137 1 137 137 158 72.0 7e-38 MKDILVALNSAAKNHNARLMKITKAENLTISEWKLLNHVIDGHSTQETLSAVTKLDISTL SRQLKRLVVKEMLSKTAVGKDKRQLIYSVTEKGTKSSQNVEQKVEDLQNQVFSHWTNEEK NLLKILINRLEQSLDRI >gi|238617813|gb|GG669608.1| GENE 324 348366 - 349238 714 290 aa, chain + ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 281 4 280 283 262 48.0 5e-70 MKIAIVTDSTAYLTKAEEEKYHINVVPIPVIIDGHEYQEGVDLTTEDFYDKLKNSNSFPS TSQAPMGEMMNLYNSLADKGYDTVISIHLASTISGFYQSVENLAPQIDRIKVIPYDSKIT VKLMGYLAIQASKMASLGREPQAIIKYLDGLRATIDELFVVDDLQNLVRGGRLSNASAFI GGILKIKPLLTFDDKSNEIVAFDKVRSRKKALKRVEELFAQAQQKANYPLRALVINGHDP KAGEEWTEKIHGLYPNMPIEQSYFGPVVGTHLGDKALALAWLRDFEKDQL >gi|238617813|gb|GG669608.1| GENE 325 349526 - 350056 430 176 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1092 NR:ns ## KEGG: Lbuc_1092 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 174 1 174 176 189 62.0 4e-47 MKSLSLGFHKLRTLDIAVLSLLLALGLIIDRFTVGTKSIQIGFGFVIIALASYLYGPVWA SAVAALSDIIGTLISGGVYNPGFTISAIFGAAIYGLFFYNQEITWTKVIVSQLIIAVFVN TVLNTLWLTLMYNTPFIALLPARLLKEIIVTPLQIAIIYFVFNSAQFERIKNKLIG >gi|238617813|gb|GG669608.1| GENE 326 350129 - 350476 325 115 aa, chain + ## HITS:1 COG:L165490 KEGG:ns NR:ns ## COG: L165490 COG1539 # Protein_GI_number: 15673135 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Lactococcus lactis # 1 114 1 115 116 92 42.0 2e-19 MYIIRMQNMQFHSHIGVMAEEKEVGQNLQVDLETAVNATPIDDHLDSTVSYGTFYPVVEK IISENRVNLIETLAQKIIVAIKNLDSRIETVTIRIRKLNLPVDGVFNNVEIEMKQ >gi|238617813|gb|GG669608.1| GENE 327 350476 - 351549 605 357 aa, chain + ## HITS:1 COG:L0175_2 KEGG:ns NR:ns ## COG: L0175_2 COG0302 # Protein_GI_number: 15673136 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Lactococcus lactis # 143 349 2 208 209 235 55.0 9e-62 MNDDIVLSLGSNIGNREFYINKAIQLLGSDANILIDKVSNFYETSPVGNVKQRHFVNIAL KIATTYTPEKLLAVIHQVELSLHRTREIHWGPRTLDIDIIFWGDKKMSTDDLTIPHPETF NRLFVLVPILELISKQFPFYQQISKQIQVLQKKDQTVSLIKKDAQPKRLVESSIHNILSA IGDDPDRPGLVETPDRVARMYDEIFSSEGLENFEDYKLFKSKSSNHSKMVLMKNIPFYSM CEHHMMPFWGKAHIAYIPDHGTIIGLSKIPRLVDFVSHKLGLQEKLTDDIVDQLNKILAP KGAAVVIDARHMCVEMRGVKKTDSSTRTIRFSGIFDTDQDLQMAFLNSIGDINGKSI >gi|238617813|gb|GG669608.1| GENE 328 351533 - 352870 732 445 aa, chain + ## HITS:1 COG:BS_folC KEGG:ns NR:ns ## COG: BS_folC COG0285 # Protein_GI_number: 16079860 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Bacillus subtilis # 23 436 24 429 430 184 29.0 3e-46 MANQSELNHETFPAFLYDQGDRIGLLKKILQSLGNPDKRFNIIHICGTNGKGSTSLMIAA LLSKMNYHVGLFTSPYIGNIYNGIQVDFKNISKQHFNQKISLIEKVLRNPKFNGVKVSAF EAQFLISMLYFADLHVDYVVLECGLGGELDATNAVFNTMYSIFTKISLDHVGILGNNITE IATTKSKIIRQNNVTISAQHQPGEAFRVLEKEAHSKNATFLTSNQTVISMILQTPKSTRV HYVNSQNDEHQSGTFNFGLVATYQLENLATVITWLIDFLNRKKLVYNLNQLLEETLSNIV VPGRFEKISQQPVIILDGGHNPDGIQAFVKTVNTLYPDSEKLIINGFLKDKSYESSVKEL ISLKNASFIITEPDNKQRELPPQQLSDVYVKLTKQTYQSFDSATDAIQYAVSHATANTII FVIGSFYLLNPIRTYLLSRSDHHEH >gi|238617813|gb|GG669608.1| GENE 329 352860 - 353954 652 364 aa, chain + ## HITS:1 COG:L0176 KEGG:ns NR:ns ## COG: L0176 COG0294 # Protein_GI_number: 15673137 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Lactococcus lactis # 60 360 56 356 357 244 42.0 2e-64 MNINEISDHQQTFTGNITISFSVAADEQPKLINLLTKYTEKILVQQTLVIAVFNHENLND VITEWPTVFDSENDQRQLQQISEASRIHFKGKGFDFDITTKPLIYSILNLTPDSFYDGGR NASIEGVLHRIEVERSEGASIFEVGGKSSKPNFDDITAKEEWERIEPFLEAIHQRFPDIV LAIDSNTNDVIEEALKNGIQIINDIDGFNSQTKLDLVAKYKPAVVTMFNGRNFNEQPETL VETMTNFFTHTISDLTGVGLNKANIVIDPGVGFSDHNTLEFDIIKMRLTKLMAEFQTPIM IAISRKSFSKRLFNLDSADDRLIPTLLFESFMTVLGGRIIRVHDVKETRQMIDAFELLKD NLLS >gi|238617813|gb|GG669608.1| GENE 330 353984 - 354523 312 179 aa, chain + ## HITS:1 COG:L168057 KEGG:ns NR:ns ## COG: L168057 COG0494 # Protein_GI_number: 15673138 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Lactococcus lactis # 44 170 35 161 165 134 56.0 9e-32 MAADIFLNMLVKELDHLQTIHFPWLNSNKIQKLKIKLIDHAGGLRDRKSKLHLSASAMVF SEQYGYFIKHPYLKTVLLPAGHVENNEVPLNCAVREFHEETGYQVKPDSGRLIDVNLIQI PANPAKSEGAHQHIDFRFGFLLETGKRADAELPVFLLTKNQAPNEFSKYFILNKSGDKW >gi|238617813|gb|GG669608.1| GENE 331 354610 - 355326 269 238 aa, chain + ## HITS:1 COG:AGl1827 KEGG:ns NR:ns ## COG: AGl1827 COG3741 # Protein_GI_number: 15891031 # Func_class: E Amino acid transport and metabolism # Function: N-formylglutamate amidohydrolase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 10 198 84 279 311 83 31.0 4e-16 MTKALLPNAILANTDWFLKELYHFLPEMGFTVIENNLNRYLIDPNRDPNEDLTGDYYHLV YAKNTFGHPLYKRPLTSTEINNRLMGFYQPYHDQLQQLLENKRNVFGSALLIDLHSFAEY THPSLNPTADIVLGNDFNRTTSKKTFNYFQRLFTQRQYSVANNFPFRGGYITRHYGSQKG IFSIQIELRYKKYIEDRYFDEEILTHWDPIIFNHAQLQLQQVFKTLASDLDNGQLFFN >gi|238617813|gb|GG669608.1| GENE 332 355381 - 355830 334 149 aa, chain + ## HITS:1 COG:Cj0225 KEGG:ns NR:ns ## COG: Cj0225 COG0456 # Protein_GI_number: 15791597 # Func_class: R General function prediction only # Function: Acetyltransferases # Organism: Campylobacter jejuni # 14 146 3 135 148 101 39.0 4e-22 MAEKEDQEDQLVGIRKMVAEDYPDAYKLWQKTPGMNLRDFDDSFEEISRLIKFNPGFCFV AEKDNQLIGTILGATDGRRGRIYHLAVAREVQHTGIATKLVNLVIKQLKEVGIQKISIIV MKNNHEGELFWKSLQFSKRLDVDTYDRII >gi|238617813|gb|GG669608.1| GENE 333 355934 - 356887 763 317 aa, chain + ## HITS:1 COG:BMEI0302 KEGG:ns NR:ns ## COG: BMEI0302 COG0604 # Protein_GI_number: 17986585 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Brucella melitensis # 1 312 10 321 336 80 24.0 3e-15 MMKAAVLTNYGNVPEYQDFAEPKVMNDHQLMVSPRASSIKQLDISKAAGKHYTNFDPLPA VMGMDGVAELDDGTRIYAMGLTGMMAEKAIIDKQNFIKLPNGLDSVKAAALPNALMGSDL ALIEKGKIKQGDVVFVNGATGATGMMAVQLAKFHGASKVIATGRNSKMLDHLKTIGADKT ILINEPDEQIVKNVVSTYSEAPFDIVIDYLWGHPAEVMFNAFRKIKLAKHLKYITVGGMA GSDIKLSSQILRSKDIELIGSGIGSFSSNVFQNYLRNDLPSVFDYAAGGQLDMNLNVFSL SQISTAWVAHGRSVITI >gi|238617813|gb|GG669608.1| GENE 334 357136 - 357999 530 287 aa, chain - ## HITS:1 COG:SP1273 KEGG:ns NR:ns ## COG: SP1273 COG3475 # Protein_GI_number: 15901133 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: LPS biosynthesis protein # Organism: Streptococcus pneumoniae TIGR4 # 3 258 8 262 267 110 31.0 3e-24 MVDMKQIHGIQLDILKKVAHLSSKHHIKYFMTGGSAIGAVRHQGFIPWDDDIDIGFTRHD FEKFLQVAPTELKSTEYFVEENRLNPIYEYDFAKVMSKGTRILERGREEAKSQNGIFIDV FPFDKMPAGKRQQIAQKQILQDILKEIRRRFYPDLYPDMSLDTKYASMTLEQLYELRLQI MTKYDDRPDLTYVNLSSPYEYGKERILPNEIHQFTKMKFEDLTVPVLSAYDSYLTHLYGN YMKLPPVEKRVQRHILRASVDGPQVLPEDEPDGQRKIRPNGFEAEAG >gi|238617813|gb|GG669608.1| GENE 335 358346 - 358522 98 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227510374|ref|ZP_03940423.1| ## NR: gi|227510374|ref|ZP_03940423.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 58 1 58 58 103 100.0 4e-21 MSLYPITEQLLTKLIWEVHLMKQKRLLFIGGTMGVGKTTLGKYLVDQKLENAAFLDGD >gi|238617813|gb|GG669608.1| GENE 336 358568 - 358927 189 119 aa, chain + ## HITS:1 COG:no KEGG:DSY2789 NR:ns ## KEGG: DSY2789 # Name: not_defined # Def: hypothetical protein # Organism: D.hafniense # Pathway: not_defined # 1 110 52 162 165 83 36.0 3e-15 MVINNIQFLLNGYLHHSTFETVVFVWVMDQQQTINDILSGLTGDYDFYNVSLIATASELK RHFEKDTQNGIREFNDLFGALRKLSMYQKINSIKISVTNSSLQESANHLIALLNAKPEK >gi|238617813|gb|GG669608.1| GENE 337 358970 - 360058 886 362 aa, chain + ## HITS:1 COG:L57903 KEGG:ns NR:ns ## COG: L57903 COG0582 # Protein_GI_number: 15673214 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 1 358 1 356 356 324 50.0 2e-88 MKKSNYIANNDVLIAEMPTYVQDYYLEKSTVPLSPATLYQYLNEFHRFFTWIMDTGITNA VKIKDIPLSDLEKFKKQDMELYKAFLLNRGKETAKNPQGTLSHRTVNRSLNALSALFRYL TEESENDDGEPYFYRNVMKKIALVPDSETYQTRARNIKDKLMLGDADVNYLNYILNDYSK QIKGKRLLKMHERDRERDVAINALMLGTGIRVSELTNANLNDLNLKKATVSVQRKGGKRD SVPIANWVIPYIKPYLQVRNQRYHATAATPSLFLTKGVDEPRRISTATVELLVAKYSQAF NHVRITPHKLRHTLASKLYLETNNEHLVATQLGQTSTKATGLYTHIVDTKQKKALDELHK DH >gi|238617813|gb|GG669608.1| GENE 338 360086 - 361198 513 370 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229845805|ref|ZP_04465917.1| 50S ribosomal protein L31 [Haemophilus influenzae 7P49H1] # 12 332 11 314 378 202 36 3e-50 MVEWTPEKIVAFQETLLKWYDNNKRNLPWRRDHDPYHIWISEIMLQQTQVQTVIPYYERF MKLFPTVQALASADEAILMKAWEGLGYYSRARNLQKAAQQIVNDYNGQWPTTVKELQELS GIGPYTAGAIASIAFNKPVPAVDGNALRVFARLLEIDEDIAKPQTRKLFENIIKKLMPKN RPGDFNQAIMDLGASYMSAKNYDSENSPVKLFNQAYLDGVEDNYPVKTKKKRPIPVNYFG LLIHSQDDYLFERRPNSGILSRFWMFPLIKGDDIQTKKDASEDDVLRALEAQFLSTYQLE IHVKKIGGRPVTHTFTHQKWQITLLEAELNNSSDLSYFPGKWISESDFREIAFTKVQTKM WERYQQQKEQ >gi|238617813|gb|GG669608.1| GENE 339 361276 - 361644 206 122 aa, chain + ## HITS:1 COG:no KEGG:Rumal_1506 NR:ns ## KEGG: Rumal_1506 # Name: not_defined # Def: VTC domain # Organism: R.albus # Pathway: not_defined # 39 120 3 84 254 75 42.0 7e-13 MCHHSIYSDINDSIDVIGILIYNFRDRLIITLRGTLDLGLKRVFKRREYKYLLNAEEYIT IRKLLMGHMSEDQYGLTTILSLYFDTPQYYFINQSMKKVPYKSKFRVRSYGTPLMDEPVF WS >gi|238617813|gb|GG669608.1| GENE 340 361662 - 362126 287 154 aa, chain + ## HITS:1 COG:no KEGG:EUBELI_00770 NR:ns ## KEGG: EUBELI_00770 # Name: not_defined # Def: hypothetical protein # Organism: E.eligens # Pathway: not_defined # 36 142 129 235 269 97 46.0 1e-19 MVYKRRLQIPYDALENTLQTGLSCLDHQQLVSNENQIKQEIKWLFDRYDIKPKVLISDDR VALSTDEDPDFRVTFDFNIRFRDEDLSLHHGGYGTKITPDFETIMEVKATGAYPVWFTDI IANLHLVKGRFSKYGYVYQHYLSQTEDNYVTGTV >gi|238617813|gb|GG669608.1| GENE 341 362107 - 362790 689 227 aa, chain + ## HITS:1 COG:no KEGG:Sgly_0479 NR:ns ## KEGG: Sgly_0479 # Name: not_defined # Def: hypothetical protein # Organism: S.glycolicus # Pathway: not_defined # 12 227 13 225 225 206 53.0 9e-52 MLQELFKAHSVSYTLPSIVGSVVASIILGLLVATVYMYRNTYSKNFVITLATLPLLVQLI IMLVNMNGNLGTGMAVLGAFSLIRFRSVAGNSRDIATIFWAMGVGLAAGMGYIFYAIFFS VVVTIYLLILNSSSFGNRGHTAERELKITIPEDLDFPGLFDDLLKKYGYDFSYDSVKTTT MGSVYELSYYIKLKDVKDEKHLIDEIRVRNGNMPVVSSKLSSQTNEL >gi|238617813|gb|GG669608.1| GENE 342 362881 - 364779 1773 632 aa, chain - ## HITS:1 COG:no KEGG:Krodi_0811 NR:ns ## KEGG: Krodi_0811 # Name: not_defined # Def: Spore coat protein CotH # Organism: K.diaphorus # Pathway: not_defined # 259 626 109 466 470 79 24.0 5e-13 MEGYSLNKRLFMGAGITGLALAVLTFTPVSAQADIGSSSIMEPGQGVTPTTAGIGKSTIV ATGDYAKNTTVDNLPVKTQSVEGNQVTVTVHSDDPNLNGKTITKNVDLSSIYPGNDNSAQ SLLDSVNDIINGSLDKMVQGRPNVISALTIGLPQTVLNMLGNVTSSSDVLGDFSRGLTSI IDQFNTQFPMGIISTGISAVGSVVSDVTGYISKSGGKVDLTGLQSKTEDKVPENSTKLPI MKLSGNEFLADKSNHSTMTFDYSDPKTGKDEKGYAEVNWSGSSTQLLPKKSYKVKLFKDQ QLTDKLKLKLFADAKKDNTYQLKANETDPTMARNLVNAGIWKSMVSSEQNVPEELKSTPN FGSVEGFPMLVFVNGKGRGLYTLTTDKSGDLWGMDKKNPDQVAIQGNVNSAPAEMFDKGN AKVDDTDFSSESSDTISDSAKNNLNDFITFVSNSSDQAFKEGLSHYANIDSIIDYYLFVN ILGAYDQIAKNATYLSYDGGKTWRMTAYDNDLTLGNYIFGLGINEPYAMYYNAARGGLFP SHNTLLRRVAQLFGPQITARYDQLRKSDVISADTINNQYVDFMSKVGYDNYTYDQDINPL EINQYTQGLPALQKVVTQRIQTLDNHFGYTGD >gi|238617813|gb|GG669608.1| GENE 343 365011 - 365745 266 244 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 5 239 1 238 242 107 32 1e-21 MSGRLNHKIAVVTGGAMGIGRAITERFVKEGAKVVVADVNEKSGQAFTDKLDNAYFYQLN VSSESNWRDLFAWVLDKFGKIDVLVNNAGIAIMSDIAHTSLDDWQKVINVNLTGVFLGTK HGILNMQAHGGSIINMSSLAGLVGDPNAAAYTASKGGVRLLTKSAATYGAQFNIRVNSVH PGVTETPILKGIPQAQKENIINQTPLRRMAQPQEIANMVLYLASDESSYSTGSEFIVDGG TTAN >gi|238617813|gb|GG669608.1| GENE 344 366073 - 366345 78 90 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227513392|ref|ZP_03943441.1| ## NR: gi|227513392|ref|ZP_03943441.1| hypothetical protein HMPREF0497_2514 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0519_2243 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0497_2514 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0519_2243 [Lactobacillus hilgardii ATCC 8290] # 1 64 1 64 103 110 100.0 3e-23 MPKLFHGYFHPTTTNPATITTKVIVIKPTPEIAFTKRIIPRCIPVKMRTTMSQPWNHQAN QNGQGDMTAFSFWVPNIGSSVTSLGSFFNV >gi|238617813|gb|GG669608.1| GENE 345 366815 - 367405 543 196 aa, chain - ## HITS:1 COG:SP0719 KEGG:ns NR:ns ## COG: SP0719 COG4721 # Protein_GI_number: 15900616 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 7 176 5 173 186 102 38.0 5e-22 MTRSGHWHIQQIILVTLIGIVCGVVYQYGVNSLYNVCKVLVGPTGLSPFVDNVFAGLWFI AAPLSIYFVPAIGSATIGETLAALVEMFLGGQWGALTLAYGIVQGAGNEFGFFPNNYKTF TWLSCILGAIGAAVLSFIWDYFVSGYNHYGVVMLLLLLMTRIVSSIILDGVLVKLITLQF DSVWKKKQRLLSKNRT >gi|238617813|gb|GG669608.1| GENE 346 367402 - 368121 546 239 aa, chain - ## HITS:1 COG:BH2679 KEGG:ns NR:ns ## COG: BH2679 COG0819 # Protein_GI_number: 15615242 # Func_class: K Transcription # Function: Putative transcription activator # Organism: Bacillus halodurans # 1 224 1 221 224 67 24.0 3e-11 MSFSQSLIKDAQPYLEANKQNSFIQDVISNRLSPDVLNYYIQQDLRYADAETIVQTQLIT KSKTIEDQRLFADQLSAHLRTVSDLFEALTKNVEHDWPNQRDQTIQPVTFLYREHILSQA REGSLLNVLAPFEAGIWMYIELGKYLEATGKIKSGNNFYTWVQDVQDPDLAGLGGISKRF LAIIDREAEKADQAQLTYVRKQFLRSCLLEWYFWDAASRQLTWDDFDKLAFKNDGSGLL >gi|238617813|gb|GG669608.1| GENE 347 368124 - 369446 892 440 aa, chain - ## HITS:1 COG:Cgl0697 KEGG:ns NR:ns ## COG: Cgl0697 COG2141 # Protein_GI_number: 19551947 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Corynebacterium glutamicum # 3 427 4 426 438 446 54.0 1e-125 MSRQMHLGALLFSSGHHGAAWRRSGSTVSQVGQIDYFEKLAQLAEGGKFDTIFFADGQSI MGGYYGGVSYFLEPITCVTAMARKTHHIGLVPTISSTLYDPYNMVRLICSLDHISHGRAG VNVITSMFDEEAQNHGLSKLPNHADRYLRADEFIHTMIELWDSFPASAIINDAEHDRWLD SSLIHEINHHGDFFDVKGPLNIPSGPQGRPVIFQAGASHQGKNLGAKYAEAIYSVAWDIR ESQAYYQDIKKRAAEFKRSSGIPAILPGLVPYVGSTHEEAQRRQSELDELLPLDDSVAQL GDFLGQDVKRWDLDAPVPELPDISEFSGPKGRYEVIKRIIDTEKPTARQLFQRLAAGGGH ATVVGSPEEVADMMQNWFESGAADGFNIMAPTYPESLADFIHYVVPILQKRGLFRKDYTG HTLRDNLGLPVPTAKITRGD >gi|238617813|gb|GG669608.1| GENE 348 369804 - 370373 182 189 aa, chain + ## HITS:1 COG:SP0260 KEGG:ns NR:ns ## COG: SP0260 COG3575 # Protein_GI_number: 15900194 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 6 189 6 190 190 141 37.0 6e-34 MLNKTDKRLVVQIIKKSPDLMNILKVIAQLNLPQGALAAGSIRNTVWQVLSHQPIELIND VDVVYFDPQRPRNDDQIIQASLIKRMPDYQWQVKNEAYMHYYDFKDASKFTSIEDAISHF VETPTCIGAYLKGNDIEIIAPYGLTDLIQLKCRPIPMFQNNKTCLSIYQNRIQRKNWKKR WPNLAIINS >gi|238617813|gb|GG669608.1| GENE 349 370669 - 370902 63 77 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTRQVMRDLKVLACEASPLFCALIINYRKTIINAYFSMTVYRLSIIINIFNKEYEINVSL LYIFLVMNLRRAKIRLV >gi|238617813|gb|GG669608.1| GENE 350 370863 - 371438 535 191 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0125 NR:ns ## KEGG: Lbuc_0125 # Name: not_defined # Def: integral membrane protein # Organism: L.buchneri # Pathway: not_defined # 1 191 1 192 192 136 38.0 5e-31 MPKLLNRALLVVSFLAQISFVISWIGFCIPVYFIYQALKGNVVSNILDNNDFQVISNHAH VSLTDINHFPAYIYTALVSIGVILAIIAVLYELKALVKITVNLNQKRYFTTENVKLVWLF IVSQLYTLAADPFLAGANQLTRTYLDRIKIGDFSVTWSDIPEDLVGLVIISVIYILFKMA EQMKRENELTV >gi|238617813|gb|GG669608.1| GENE 351 371465 - 371701 199 78 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163756262|ref|ZP_02163377.1| 50S ribosomal protein L20 [Kordia algicida OT-1] # 2 66 3 67 67 81 60 8e-14 MIKITLNVVMAQRNISTGELAKMVGITPTNISILKTGKAKAIRFSTLEKICKVLKCQPGD ILEYVDEESNPTTNLSDF >gi|238617813|gb|GG669608.1| GENE 352 371920 - 372861 844 313 aa, chain - ## HITS:1 COG:DR0508 KEGG:ns NR:ns ## COG: DR0508 COG1715 # Protein_GI_number: 15805535 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Deinococcus radiodurans # 10 313 23 336 336 192 38.0 7e-49 MVVNQNISGMPDWDKTVAMTLTVVNERDSWHRVELRKKVADDFKLPDKVRYRNSTKNPKN IIIENRIGWALSDLAISGAIERPQQGIYRITTLGKRLLAERGMNLTLAEVSNLPMFQEHQ KEVAERRKRKGEISMDTIDDVEDTADVSEVLADKSDKYNIEVKTELLRQIMNSDPIFFEH LVVRLLSKMGYKGPNGSATVTPASGDDGIDGIINQDPLGTNTVYVQAKRYAKDNRVQRPQ IQSFYGAIKGKGAESGVFITTSDFSRLAREYAENFRIVLVDGIELTDLMLEYEVGVQVKS DYKLYEIDNDFFD >gi|238617813|gb|GG669608.1| GENE 353 373086 - 374825 1391 579 aa, chain + ## HITS:1 COG:lin0730 KEGG:ns NR:ns ## COG: lin0730 COG0028 # Protein_GI_number: 16799805 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Listeria innocua # 4 579 5 576 576 626 54.0 1e-179 MAQKASEQLVDVLIDWHVKHVYGLPGDSIDTTVDALRKQQDQIGFVQVRHEEVASLAAAA EAKLTGKLGVCLSIGGPGAIHMLNGLYDAKMDHVPVLALLGQVDTQFLNEEYFQEVNTPQ LFADVAVYNKLISATDNLAEIVDEAIRTAYEKHGVAVLTIPDNLPEQRVSGHYISSASSF QLTSPQIDDNRVNTAAKLIRDSKKPLALVGLGAKKAGSQVTAFLEQNHIPFISTLPAKGI IGDSHPNSLGNVGKLGTKPAYEAMQNTDLLLMFGTNYPYTAYLPKPGTAKSIQINTSASA IGKRYPADVGLVADIKDVIKRLNSSETTILHPDDGFLKACQENVANWNRWMTGKRELDSK PVAPEALFNDINETAPLNTVYSIDVGTATSWSARFLNVSPTQKFILSSYLGTMGCALPGA IAAKINYPDRPVISVNGDGAFAMVMQDFITAVKYKLPLINIVLNNSKLAFIEYEQQAAGQ LNYQIDLQDMDYAKFADAAGGVGITAKTSEEFKNALNRAYRVQNMPVLINAYVSDDAPLP GKIVGQEAKGYMKFGSQYLKEEKKIPELPPLKDILRQFF >gi|238617813|gb|GG669608.1| GENE 354 375228 - 375470 429 80 aa, chain + ## HITS:1 COG:SPy1265 KEGG:ns NR:ns ## COG: SPy1265 COG2261 # Protein_GI_number: 15675224 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 80 1 80 82 75 72.0 2e-14 MGFIWAIIVGAVIGALAGAITNNGQSMGWIANIVAGLVGSAIGQALLGSWGPSLAGMALI PSIIGAVILVLIVSFVVKRS >gi|238617813|gb|GG669608.1| GENE 355 375488 - 375640 168 50 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227510394|ref|ZP_03940443.1| ## NR: gi|227510394|ref|ZP_03940443.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus buchneri ATCC 11577] conserved hypothetical protein [Lactobacillus hilgardii ATCC 8290] conserved hypothetical protein [Lactobacillus buchneri ATCC 11577] conserved hypothetical protein [Lactobacillus hilgardii ATCC 8290] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 50 1 50 50 79 100.0 9e-14 MDALKAVFKFMIASTLIVSGVLLGGTLFATKKIDIFGDKLQNKIYGSKSN >gi|238617813|gb|GG669608.1| GENE 356 375729 - 376760 546 343 aa, chain - ## HITS:1 COG:no KEGG:SH2075 NR:ns ## KEGG: SH2075 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 12 115 8 116 338 77 39.0 6e-13 MKTNQLIHLTSEKRNFLANKLTEPQRLFLIKHRRYRMQSNFLNASLSDGEKWQLYDFKVD PNVSGKLTCRCGRTLKYQYIIQDQRTKQTQKLGINHFQEHMGVPENVAKQVAKGLQEINT GIDEILVNTFLSADKPSDELIEFVRRSGNAIRYGKEFLSFIDIGLVPYRKIIQDCENRRS SMKMKRKRQKWVVPLQIDKREKTSYIFRQGNQKAPRPTQEHQNGRSKDQRLWLKHYREVQ MPKAEEGLNYLDQHFDRMSFTTNPKIGKYILGFASYFMCHIGRGSHFGIEELTDFILQIS YETDTSRSRAFEELLKQVQQILILFIEIGFVDIFDDQSYIVLT >gi|238617813|gb|GG669608.1| GENE 357 377152 - 377727 233 191 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227510396|ref|ZP_03940445.1| ## NR: gi|227510396|ref|ZP_03940445.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 191 1 191 191 320 100.0 3e-86 MQLTKRLQFNLLQMPENSIFFWLTRIIMTGLGSWIALILSQMISQSATFLITVVILVQLS QRTKNHVNAHSPIYWLLVGLTAVAGTTLANILNIDFGISSLFFVCGYVAKIYSVYYLKHH LIITQKLSHFLLFESRLIYWLDLGFDFTFESAIASWFSNSLNLTALGTLLTADLPTLFTV IRHQFNTIGLE >gi|238617813|gb|GG669608.1| GENE 358 377817 - 378512 649 231 aa, chain + ## HITS:1 COG:L0129 KEGG:ns NR:ns ## COG: L0129 COG0745 # Protein_GI_number: 15672984 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Lactococcus lactis # 1 226 1 225 228 216 48.0 3e-56 MANTILLVEDEEGLSSYLTTELQFENYTIILATDGKQALDTYESMRGQLNLIILDWMLPK LDGLEVLRRIRQNDDIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVMLR HSQNQATSDDLFRIEDLTLNTKSRQVTRGNSLIQLTQREYELLLTLIKNAGETMTRDELL NLVWGVDFEGQPNVVDVYIRYLRNKVDRNFKKTLIHTVRGVGYVLSANYQG >gi|238617813|gb|GG669608.1| GENE 359 378523 - 379899 855 458 aa, chain + ## HITS:1 COG:L0128 KEGG:ns NR:ns ## COG: L0128 COG0642 # Protein_GI_number: 15672986 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Lactococcus lactis # 4 456 2 441 441 276 33.0 5e-74 MKRKKPQMTTTSQEIQHSFRVLFIWFAFLMSLAVVGVVGVQLVHQRQAESIELLGSLKRS IIDDRPDWEQWRKNSTINTQNTYVKVNDRTRNIPTKFYSHGTKTFLKAKQIHLPFFRALT YVDGYGFMYYRSGSKLGIMSQIWLSLNPVVNVLLSVIIVVFSLFLLSLLFGWYFISSTAK RLTQPISQLSQTARDQSKSELEYETLLPVPKTPMEVKQLTTSFNELLTSINHKNQQEKRF ISNAAHELRTPIAAIRGHIQLVQRHGRDHPEIVDRSIQFINNESARMQTLVNDLLALSRA DRGDVKLDYIDLTSLLNETVEEQRAVLKQTINVNIPTKAVVYANADNVQQILSALLDNAG KYSPADSQITVVLSQHGSQYSLSVQNTGPRIPDNQKDQIFERFYRGDQAHNHQVSGTGLG LSIVKQLAELNHIQITVTDLKPQGSRFNLLFNNPENQN >gi|238617813|gb|GG669608.1| GENE 360 380014 - 380757 832 247 aa, chain - ## HITS:1 COG:alr2142 KEGG:ns NR:ns ## COG: alr2142 COG4221 # Protein_GI_number: 17229634 # Func_class: R General function prediction only # Function: Short-chain alcohol dehydrogenase of unknown specificity # Organism: Nostoc sp. PCC 7120 # 2 246 3 242 244 220 47.0 2e-57 MTTKSKVIVITGASSGIGEATAKLLAKKGHRLVLGARREKKLEEITDSINSDGGQSIYAP VDVTDLKSVQSLADLALKQYGRIDVWMNNAGLMPHSEFIKGRVDDWNRMIDVNLRGVLYG INSALPTMRKQKAGQFINIASVAAHSVHPGGGVYSATKAGVWMISEALRQEEAAAGSNVR VTVVSPGAIATELVNHVTDPDQKKAMNAYYDQFASSPQRVASAILSAVDLPADTTINEIV LRPTRQG >gi|238617813|gb|GG669608.1| GENE 361 380741 - 381151 301 136 aa, chain - ## HITS:1 COG:CAC0766 KEGG:ns NR:ns ## COG: CAC0766 COG0789 # Protein_GI_number: 15894053 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 3 123 2 122 126 109 47.0 1e-24 MATINQVSQKFDLTKDTLRYWERLGLLPEIQRNGSGYRDYSEYDMNWVFYVKALRKAGMS IEALIEFVKLYRDGQQNSEARKTLLIDQRRELIDKMTEIKKTVAYLSFKIDHFEDHTLNY EKEKLVYEEKNNDNKK >gi|238617813|gb|GG669608.1| GENE 362 381401 - 382342 791 313 aa, chain + ## HITS:1 COG:SPy0510 KEGG:ns NR:ns ## COG: SPy0510 COG0463 # Protein_GI_number: 15674614 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pyogenes M1 GAS # 1 312 1 307 308 350 54.0 2e-96 MTLISLVVPCYNEQASIPIFYKTVEKILTQFANHSGHYQWEYWFINDGSTDKTLDELEIL NTKDPNRVHYIDFTRNFGKEAALLAGFTQADGQYIGVMDVDLQDPPELLPKMIELLDTTD NDVIATQRTGRNGEPRIRSWCSDRFYSLINKISKVKMRSGVRDYRLMRRSVVTAIISLPE YNRFSKGIFSWVGFKTKYLTFPHHDRVAGKTHWSFSQLVSYSLDGIMDFSAVPLAIASWI GIISFILAIFGLIFIVVRALIYGDPTIGWPSLVTIILMVGGIQLLCLGIIGKYISKIYLE TKHRPLYLIKKER >gi|238617813|gb|GG669608.1| GENE 363 382353 - 383030 416 225 aa, chain + ## HITS:1 COG:lin1664 KEGG:ns NR:ns ## COG: lin1664 COG0671 # Protein_GI_number: 16800732 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Listeria innocua # 9 193 4 191 217 79 29.0 4e-15 MQKKYNYNTQILISWWGLFAIVAFMVKQQSSHLFNIDQLGLIDIHRFLQPSQLTAFKWIT LTGSPIVTTLGALILSGWLLHRKQPLFSLITLTTVIGGDLLELCVKELIQRPRPAFELVR ATGYSFPSGHVFGTTMLAVLIWHFVISKTNRGQHQFFLLFLLIYWVGLVAISRVYLQVHF PSDVLGGFILAQAWWQTVNISYLRHEQQIASTINQLTGSDPKKTR >gi|238617813|gb|GG669608.1| GENE 364 383036 - 385603 1078 855 aa, chain + ## HITS:1 COG:L48341 KEGG:ns NR:ns ## COG: L48341 COG4485 # Protein_GI_number: 15672817 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 21 837 19 864 883 146 24.0 2e-34 MLTKFRQSIGVTTAISGVFALLIITGVMIAYQITPFGRQNLLFSDNAAQYVTFLTALRHA LVTHQFSLYSFGLSLGSNAVPTLAYYLMSPFNLGLVFFPAAQVPSAITLMIILKVACISA AMAYFLQRHFEIVSGWAVLFGAAFGLCGFVAADYFDIMWLDSLICLPLIINGLDTIVRGG KPTRFFVWLLFGVIVNYYLGYMICIFIVCYTVYIIYEDGHGQLSFSQLLNQNKDHLLTIV FSGLFSLMSAMVILVPTIIGMMQTAKHAYVSANFTFRSMFSFPVLAQLGIGGVSYGNHLI HAPAIFSSLIVTLLVGCYFVHPNISRSSKWHAAIFLLGLLLSMKVCITNTIWHLFQQPSG FPFRQAFFFSFMMITISYGAWLKNAKLVSRHWKVALPAIIMGCLILGTFGPHFLMMSSAS NRLSSTQLGILTLNISVIVLGSLIIFTTGRLLQSCLMIGLFAGELSGNFLIAMAGSPFGN QIQYQQRYQREAAILKPITKDSGQLYRTNNQSRLINNSFQRYYNYNDALLFNYRGISEYN STINDTTRRTLNSLGLFSKNVRRISAQGLNPVTEMLLGVKYNVSPSNRLTQNTSYVGMGF PTSKSLTTIQLHPTDKFTNLEKILVSINKGEAPYFYPVRKTRVQLIRNKSKQTNYRYHLQ MTVNTTGPLYLNARLRGTNYTTITVNGKHIASPKVPANRFRFLDRLGSYTKGTKLSVALT SAIPYPEALQFESMNQWKFKKLVASLQFPGYVPKIQGNQISGDIIANRHQRSAFLSIPFD KGWQIKVNGHPTAPGKVLNGLMAVPIKSGLNYIVLTYHTPGLIIGSIFSILGLVSFICLS MVLKLKEPLKHRKRS >gi|238617813|gb|GG669608.1| GENE 365 385737 - 386387 606 216 aa, chain - ## HITS:1 COG:ECs1906 KEGG:ns NR:ns ## COG: ECs1906 COG0702 # Protein_GI_number: 15831160 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 2 216 11 219 220 132 37.0 6e-31 MNLLILAANGQIARIVEKRLLSEDKFKDISLTLGLRQPKRLADLANNPRVRLLDVDMENQ ESVSQAVAGQDMIFTAVVDHDPDNKMTRNIISAMKAHNVSRIISTNILGIYDEVPGEFGR WNRSMVKSGLAAATQSDTLLSQSGLAYTTLRLPWLTDRDEVSYQITHKNDQFVGVSGSRK SVADLVLKMFTDPSLGVNDSLGLADPATQGKNRPVY >gi|238617813|gb|GG669608.1| GENE 366 386442 - 387293 822 283 aa, chain - ## HITS:1 COG:YPO2805 KEGG:ns NR:ns ## COG: YPO2805 COG0656 # Protein_GI_number: 16123003 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Yersinia pestis # 1 282 14 295 297 378 63.0 1e-105 MMKMVRLNNGVEMPILGFGVFQVTDLAVAQRAVLDAIKSGYRLIDTAQAYGNEEAVGRAI KQSGIDRKELFITTKLWLTDTGYDATKKAFQASLKRLQLDYIDLYLIHQPWGDVHGSWRA MEDLYREGKIRAIGVSNFEPDQLTDIAIFNDVKPAVNQIEVNPWNQQLKPVSFMQDNQIQ PEAWAPFAEGKHDIFQNSVLAQIGHRYNKSIGQVILRWLLQRGIVTIPKSVHKNRMVENI NIFDFELTDEEMTMIQKLDKQESQFFDHRDPEAQMKIVGRRIK >gi|238617813|gb|GG669608.1| GENE 367 387526 - 388236 675 236 aa, chain - ## HITS:1 COG:L178908 KEGG:ns NR:ns ## COG: L178908 COG2013 # Protein_GI_number: 15672568 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 232 1 231 232 244 54.0 1e-64 MDFTISKDTAFPTVTLKLRKGEQIQIERGSMIAHNGQVTLEGHMNSNGKKGFGGVLSALG RSVTSGEGFFITTATGNTDDGELLIAPANPGAIRELRTDESHQWRLNTSAYLASDEGTSY KMIRQKLGSAVFGGTGGLFVMETQGSGTFLVSGYADIMSVELQGNDEYVVDNSNVVAWSQ SLDYNIEVGSGTFGFKTGEGLVNHFKGTGTVLIQTRSIEGLANLLMPFLPDRSNDN >gi|238617813|gb|GG669608.1| GENE 368 388434 - 388919 361 161 aa, chain + ## HITS:1 COG:BH1453_2 KEGG:ns NR:ns ## COG: BH1453_2 COG0454 # Protein_GI_number: 15614016 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus halodurans # 1 156 1 159 160 139 49.0 2e-33 MQIIPLECHRQSAIQLFQNLWGATNMVVSTGQYDIKDLKGFIAMKNDQIIGLLSYELKAD YLEIISIDSLRPGIGIGSQLLNMVEKLAYEKQLTKLEVITTNDNLNALGFYQKRGFRLTE VIPDAVRLARKIKPEIPLKADNGIPIVDELKLVKQLMDRQR >gi|238617813|gb|GG669608.1| GENE 369 389016 - 390359 672 447 aa, chain + ## HITS:1 COG:NMB0982 KEGG:ns NR:ns ## COG: NMB0982 COG0038 # Protein_GI_number: 15676874 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Neisseria meningitidis MC58 # 78 440 18 375 380 133 29.0 8e-31 MVELNRFIFESWLSFNNFHEPLILLMAGYGKIIPVMKKENLILTISTIALGLFVGMSSLF LSLFLTFIEEGFLHFKETPLRPIITGSPNDARLFSVFIGGIIAAVIWWILRTKVKPPVTI GKGLAGENMPAVQTILHVMTQIFYVGTGGSIGRELAPREAGAMIAQKWNNLLNRLHWGRL SKDDVALLIASAAGAGFAGVYNAPMTGMFFCVEVLFKKISIRSVCVSLPMSVIAALVSSS VRGTEPYYLVGKAQFEPKFLWIAIFISLLCGIVGALFRKSFTWAESVKPDNYHILWQLPL LSFITGLISINFPQIMGNGRALAQFSISATGRNFLLVLLLGAVAKYAVTVFTIRAGAFGG TLTPSVAIGAAIGAFIGIFIFPYVGMPIWQCALLGGCSLLAASQQAPLMALFMVFEVCHL NSMALIPLGMGVAISVAISRVVLRKVM >gi|238617813|gb|GG669608.1| GENE 370 390473 - 392401 1365 642 aa, chain - ## HITS:1 COG:lin0644 KEGG:ns NR:ns ## COG: lin0644 COG2217 # Protein_GI_number: 16799719 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Listeria innocua # 32 618 39 624 625 457 42.0 1e-128 MTTKLYFFGLILYLLDLVLMFSGFNSAIVTSLFLIATVSSGYHVIFEGFEKTILESKRTS RFMPNIHLLMSLGAVGAILIGSYEEAALLVLIFAGAHFLEEFAEGKSRREIKALLEMTPV KAKRIDDDGKASEISVNDVKIGDRIQVQNGDEVPIDGQIISGQPAINESAINGESIPREK GPGDNVFAGTVNGNATFMMTATKRNDETVLAKILKLVEQSQSHLSKTATRIKLLEPKYVT AVLILFPLVLAAGYWGFNWGLNVSLYRSIVFLISASPCAFAAAAVPATLSALSQLAKKGV LFKGGSYLSNLAELETVAFDKTGTLTKGEPEVTDFYLVDSKDKDKLTNIIFAIESQINHP LAAAIASHFVPTERLQVDVSNEIGKGVQAVYGSKVYAIKKPSLFSEVSSLIDKKMRQFAG EGKTVVYLAENDKVIGLIALMDTPNERSKQTIQFLKDQQIHTMMITGDSKQTGEAVGQLL GIDEVITNVLPEQKVDVIKQQKAQGKVTGMVGDGVNDAPALVTADIGTAMGDGTDVAVDV ADVVLMKNDLSKFVTSYEVSKRLKKVVWQNIIFALVVVMVLVGLNFFGLMTIGLGVFMHE GSTLLVILNGLRLLKGNKDSNVSVTKQTEPTLGQKMNPAIKG >gi|238617813|gb|GG669608.1| GENE 371 392498 - 392965 229 155 aa, chain + ## HITS:1 COG:FN0260 KEGG:ns NR:ns ## COG: FN0260 COG0640 # Protein_GI_number: 19703605 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Fusobacterium nucleatum # 56 150 28 122 125 84 45.0 5e-17 MNILSFIFKNLKHCFLLDTMRLNSYIIIIIDFHGGNHLTEQDHKQAYEQMKENGIPLSEH IDTVTTVFKVIADQTRMRILLALSETSLSVNEIADILTMSQSSISHQLRVLKDNRLVKGT RLGKQIHYQLTDDHIVQIFKQIIEHIEEKKQHHLS >gi|238617813|gb|GG669608.1| GENE 372 393056 - 394984 1550 642 aa, chain - ## HITS:1 COG:SP0729 KEGG:ns NR:ns ## COG: SP0729 COG2217 # Protein_GI_number: 15900626 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 1 631 21 659 660 703 59.0 0 MKKFWLSLILASPMLLQMVLMPFHWMMPGYNWIAFITTTMVMLVSAVPYWKSAWAAFKHH NANMNTLVAVGTSVAYFYSLFAMMTGRAVYFESAALVTVFVLLGDALEERMHHSASNALG KLVSLQVKEAEVLSKGQYVKTPLEQVQVGDMIRVRPGEKVPVDGVVTEGVTNINESMVTG ESMPVVKKIGDNVIGSTINSDGMIIFRATKVGKDTALSQIVELVRKAQTSHAPIQNLTDR ISGIFVPAVLIAAILTFVIWFVFLGAPAVQAMLFSVSVIVIACPCALGLATPTALMVGTG RSAKKGVLIKNGQALEEVNDVKTVVFDKTGTITAGKPVVTDVVGNQEKVLQVAASLEENS EHPLAAAVMAKVSGAKITYQKAKKFKNIEGKGVKAVVNNQKAFVGSDKLSNDYLLSDEMK KQMAKLQNDAKTVVLVGLNEKIIGLIAIQDTPKKTATEAITELRSRGLKTVMLTGDNQRV AQAIGRQVGIDQVIAGVLPNEKADHVKALQQSGKVAFVGDGINDAPALTVANVGIAMGSG TDIAIESGEIILIQNDLLGVVRALDIAKKTFNRIKLNLFWAFIYNLIGIPISAGILVGIG LQLSPELAGLAMAFSSVSVVTSSLLLNRSKIAGDHENDKVTA >gi|238617813|gb|GG669608.1| GENE 373 394996 - 395316 317 106 aa, chain - ## HITS:1 COG:SP0728 KEGG:ns NR:ns ## COG: SP0728 COG4633 # Protein_GI_number: 15900625 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 3 104 22 122 123 84 38.0 4e-17 MNFKKLFGGQDKSETTNSHTQLIKINVDHGYEPSTVTLKQGVPAKLIFHRINDSSCLAKV QSEELSFKKNLPLNKNVEVSVSTDKSGEFNYACGMNMFHGKVIVNE >gi|238617813|gb|GG669608.1| GENE 374 395345 - 395719 345 124 aa, chain - ## HITS:1 COG:SP0728 KEGG:ns NR:ns ## COG: SP0728 COG4633 # Protein_GI_number: 15900625 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 123 1 123 123 109 43.0 1e-24 MLQMITFMVAILLIAFIVWWFFGKHEGSVADAQVTDNKQETTVLVDGGYSPSTLFLKKGI PAKVSFRMNDSTACLSHVVFEKLGIDKDLTKQSVTEIEIPTDKAQEFDYACGMNMFHGKI IVKN >gi|238617813|gb|GG669608.1| GENE 375 396010 - 396876 627 288 aa, chain + ## HITS:1 COG:BS_yisR KEGG:ns NR:ns ## COG: BS_yisR COG2207 # Protein_GI_number: 16078146 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus subtilis # 12 288 10 285 287 123 31.0 4e-28 METDYISISCIPLPTFIQGGYAIFDAGETHPNRNDLQYFVLMFMVKGTLFIAEDGHNYTL KQGDVFILLPRHHHYSWKTVEEQTEYYWLHFSVTGKWLQGPTPVEVNSKINIPTLHYFTP SVTLYLKKCQQLTDEDATFKLINRIFKNSALQNNLGFWQAQQQFIDLLQTVQEKIQHESS YTRLAENIERYLRDHFDEKITNTSLGQKFHVHPNSVTLSMKKTFGMTPNAFLTKYRLEEA VKRLLTTSEPINQIATDVGYRNIYYFSSNFKQHYGISPIAYREKFTRK >gi|238617813|gb|GG669608.1| GENE 376 396933 - 397610 432 225 aa, chain - ## HITS:1 COG:BH1861 KEGG:ns NR:ns ## COG: BH1861 COG3534 # Protein_GI_number: 15614424 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-arabinofuranosidase # Organism: Bacillus halodurans # 5 221 278 497 500 216 50.0 3e-56 MRCCKGTKTNQKTINLSLDEWNVWYHSNDQDAKTAPWQTAPHLLEDVYNFEDALLIGSLL MTLLKNSDRVKIACLAQLVNVIAPIMTTDQGVWFQSIFYPYMQVSNYGKGIALTPEVDVA TYKSREFDAVPYLDSIATYDQSQDEVTIFAENKSQTEVIDFSTLLRDLNVKKVIEATQFY GYDVKADNRDGKMGLQSLDVLTDDHEIKAKLQPLSWNMIRVHVSK >gi|238617813|gb|GG669608.1| GENE 377 397445 - 398434 608 329 aa, chain - ## HITS:1 COG:BH1861 KEGG:ns NR:ns ## COG: BH1861 COG3534 # Protein_GI_number: 15614424 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-arabinofuranosidase # Organism: Bacillus halodurans # 1 289 3 287 500 396 63.0 1e-110 MKATLKVDPSNQISKIDERIYGSFIEQLGRAVYEGIYQPGQSTADNDGLRRDVIDAIKKL NIPIVRYPGGNFVSQYKWEDGIGPKDARPTRLDLAWRSIETNQFGLHEFMNWADKVGTKA DMAVNLGTRGIMAAANLVEYCNFPKGSYWSDLRRQNGQEQPYNIKTWCLGNEMDGPWEIG QKTAYEYGHLANEAAKAMLAVDDSIELVACGSSSMDNPTFGDWEKTVLDQCYDNVDYLSL HRYYGFYGDDDPNELDNYLGKNIDLDEFIKGVVAICDAVKARKRTKKQLIYRLMSGTFGI IQMTKMPKRRLGRRHHTFWKMSIILKMHC >gi|238617813|gb|GG669608.1| GENE 378 398474 - 399844 1191 456 aa, chain - ## HITS:1 COG:STM0042 KEGG:ns NR:ns ## COG: STM0042 COG2211 # Protein_GI_number: 16763432 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 21 446 22 452 457 310 40.0 3e-84 MKSSVGEAINSKVKIPFHRMLAYASTDAAGNLLYTTVTTFILYYFTDVFGLSIAAAGTIL LAARILDAFDAPIWGFIIDHTHTKWGQSRPYWLWMAFPFAIFFVLMFWSPDLSATGKFWW ALITYLLFGISYTGVGTPITSILPNLSNDSDQRIKLNSTRSIGGMIGYFITATFTLSFVS FFGDTPQAGWRNTAIILGVIGFGLLMFAFSDTREINKPKKAVSILSSIKAAKSNWPWFIL VLVFIFYWLGNASRTSVVVYYTQYNLGHKEFASILNALVMMQLIGMVAIPFLVKKFRKTY VLMAGMFLAALGQVLIAFTGQSFIGLSLAWSLASIGTGISVTLPFAMLADTVDYGEWKNG IRASGFLTAIGSSFAIKMGSGLGGWAPSIVLARAGYKAGAVQNDQVLSAIRFCISYLPAI FFVIGGLLILLYIKFERQEKGIRTTLLERRGSLNEG >gi|238617813|gb|GG669608.1| GENE 379 399865 - 402231 2085 788 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_1660 NR:ns ## KEGG: Pjdr2_1660 # Name: not_defined # Def: hypothetical protein # Organism: Paenibacillus # Pathway: not_defined # 1 770 4 784 809 611 41.0 1e-173 MKSKYFTVKQNERGAIVNLTINDDPSKMNWVIDPAYLKSLKYQDNDKLFGEFHITINGHQ YVSINETPIIKSNESESRLSFLLGKVEIIEKFILRDDSLYWRIEMVNHGKEIMTINDFGV WISLAYVMFRDKNVHRNANQSAAVFPSISANYTKLAAVRRDNTNPNLGVYQTGGNVLSVG TYNDYTNRFFENVSPSLDGMLFHEFVLAGGYKSDKRPHHDWIYPQNEIDIQPNQTVSWEF VIHAYSDRENFYRTAKQFGHPNISFEPLVQSGQKQLVTIIPADNQQIEQIIVKYKKGSEL VSKDMTSDCHDNRLRFNPQGLGEHQLVVRFADGTSDMCVFNVMSSVNQLLATRADYICHQ SYSGKDGKVPYSFGPVSNQGESIGKMTFVLQECLLDPHISNLGQKIGEIEESAVKYVRTK WFVDGNFRKPRKLYGDFYRVMDLEYIAHLFYLLSKCPAKYLTLHKPMDYLKWATEVFDVR VNPDLHDNQRGKEEAQMLGVYFMYIEDLLKDVKNAGLAHEYKEISRSWQTATKRVEADSD TLAAAMTEHFFDNAGFGPAAAALALTNNQKGANNYGELLKANIGFSNDFRSQSPDRWWEA LSYMIHSLWGGVTAAAAQITGEKLGDVALVQAAYRATNAVLYMYDANASTTDRKLQPGEA ASTYSIAGPNLNRPDLSRNRFGQSIFASDGGIFSRLFPDGYTGEDDWDMGEELVAYLNGF GQTTYLYSDKAGQYHAINGAVQKKDDHQYQVRSFAPYLRKYVNLDTSSRFYTTKLAVRFD GKTQEFQD >gi|238617813|gb|GG669608.1| GENE 380 402644 - 403675 623 343 aa, chain - ## HITS:1 COG:CAC0393 KEGG:ns NR:ns ## COG: CAC0393 COG1609 # Protein_GI_number: 15893684 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 2 313 3 315 344 187 31.0 3e-47 MSDKQMTINDIAKMAGVSKATISRFLNGHFERMSEDTRTKIDQIIKTSGYRINQQAKALT DKQTHLIGMVVADIENIFSSMLFKGADQIFQESGYQIILMNSNNSLDQEQKQLERLLSLR VDGIILQPVSEMASHYQFIKDTGTAMVIVDRKLTPQSWPEITTDNYGYSQLLGNFIVRMG YQRIVMISEKIIDNSARTERYSAIKDIVDKVGISAKLIEIDRSTSDSDIYNLLMALSDNL ENRTAVYALKGTILMRVIAILSHYHVAVPGQLGVVAFDDWDWAKLVQPQITTIQQNPQVM GKKSARRLINMMENDNMEIDTTLIESSLKVRDSLVDYHKNKSI >gi|238617813|gb|GG669608.1| GENE 381 403743 - 404003 224 86 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227510420|ref|ZP_03940469.1| ## NR: gi|227510420|ref|ZP_03940469.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 86 1 86 86 135 100.0 1e-30 MSENRTTIDAEKFAFHVLDTIHFRESSDYERQLKDRLTVFLMAKYLIDDFNDLENRNFNI HENNDQTLSKLGFDSLLKRIESLNKY >gi|238617813|gb|GG669608.1| GENE 382 404006 - 404953 953 315 aa, chain - ## HITS:1 COG:PAB0514 KEGG:ns NR:ns ## COG: PAB0514 COG0111 # Protein_GI_number: 14520969 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Pyrococcus abyssi # 3 301 5 307 307 202 39.0 7e-52 MTKVAVPKGLSVEGKRYLTDHGLSLIELDSMASDSIEKNAGDADGLILMTDPFPNQTIKQ LPNLKVIARHGVGYDNVDQNFMAKAGIWVTITPNANASTVAETTLAEILDVSKNLTSISD EMRKGHFEYKNTHMGFDVAGKTLGIMGYGRIGRMVAKKASGLDMKIMIYDPFVKESEDGQ LVDRETLLKESDIITLHMAVTPDNQQGIGKNEFNEMKDSAVLINLGRGALVDQTALINAL RTHTIGGAALDVFNEEPLRLTSDFYQLDNVLLTPHIASNTKECMARMAVDAASEVVRVLA GDNPKWPVNKIETGD >gi|238617813|gb|GG669608.1| GENE 383 404986 - 405768 856 260 aa, chain - ## HITS:1 COG:CAC0361 KEGG:ns NR:ns ## COG: CAC0361 COG1028 # Protein_GI_number: 15893652 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Clostridium acetobutylicum # 6 260 7 260 260 253 49.0 2e-67 MSESIEFSTDKFRLDNRVAVITGGASGLGFSYTKALLLSGAKVFVASYSDKGWQEAAEFA KSVSGQIDFIKSDITQEGAAQKIVEAVKKSFGGIDILINNAGIQIRNEWDHFNDEDWRKV INTNLNGLYYLSHEAAKVMAEQKHGKIINVGSMQSFRAGKFIFPYTASKHGVVGLTKAYA DALAPDNIQVNAIAPGYIDTPMTKALQNNSERNTEILAHIPAGHWAKPSELMGTIVFLAS SASDYVTGVTIPVDGGYLLR >gi|238617813|gb|GG669608.1| GENE 384 405787 - 406536 535 249 aa, chain - ## HITS:1 COG:no KEGG:OEOE_1669 NR:ns ## KEGG: OEOE_1669 # Name: not_defined # Def: sugar phosphate isomerase/epimerase # Organism: O.oeni # Pathway: not_defined # 2 244 1 243 253 218 47.0 2e-55 MMNMNRFVLNTLLLQHDHNIGQTQLQLVQSLRQLGVSNIELRREYNQEKMSELMQLGRLR LNYRLTYFYSIPDNLFINGKINERILLYLSEAQLMGSSYLKMTLGDFHKDNDGELAILNS ILPKTIELNIENDQTAENSDPDKLATFFTTAKRHGLEIGFVNDLGNWIYTNHDTKKVTEQ LLDFTKYIHLKSYVLNEKGEPETVPFSKGLLDWQSLIAKFDKQIPIGLEYPTDLAGLEAD LEVLGNSQF >gi|238617813|gb|GG669608.1| GENE 385 406817 - 408091 1014 424 aa, chain + ## HITS:1 COG:no KEGG:LEGAS_0075 NR:ns ## KEGG: LEGAS_0075 # Name: not_defined # Def: divalent ion symporter # Organism: L.gasicomitatum # Pathway: not_defined # 1 423 1 423 424 499 69.0 1e-140 MSNIIIGILLFLTFIGFIVFVMRGGNIMIGFLIMAVLWTVIGGIPYKEAINDIFSQPAMD YGSTIMVIIFGSWFGRVLVDTGVAGAISEQAVKVSYKHPISAAILVCLITAFIFTSSYGV GAVIAIAVILLPILQSLGLSKNVAVVAFVMSIGAPMYVNIVIIKQIQLFFPKVIYGAKYL TYGFSAMAVQMIVVILFILVHAKSIHKNEVTSTDVKDVNIPSVPKISYILPVFPVLMNLI FGWQPIPALMLSIFLVLLTTGHLKTYKNALSMINQTVSKAISDISGLIVMLLFLTMFSAA AVKNTARFGTILKSIVPHDPFILAIAFGVLAPLALFRGPLMVWGAGSATAAVLAATGFFN QYFAFCAIIVPAVSIAISTCITQSWNLWVVEHTELNVKDFLKTGVPYGWLTSIINLLLAA MMFH >gi|238617813|gb|GG669608.1| GENE 386 408222 - 409145 678 307 aa, chain - ## HITS:1 COG:BH3531 KEGG:ns NR:ns ## COG: BH3531 COG5585 # Protein_GI_number: 15616093 # Func_class: T Signal transduction mechanisms # Function: NAD+--asparagine ADP-ribosyltransferase # Organism: Bacillus halodurans # 114 267 319 472 490 78 35.0 2e-14 MQSPTYAKTAHKHTSETNLLMINTYTHATNVGKQAFVTRRSITAYETKNDQPDYQNPVQI PKNTALTVQQKLAGNAGYIITVPGNPNKLFFQDTHDSLYSYKSIRNNAHEIDKLTRSSLK WSKKLTGNQRHAIRYYTGDGYEAINDALRGSEKKASKKIRSDVKNINSGIHQFKLSAPLT VFRGTSMFGLKKSLDDQGVKVGGEYSDMAYSSTTLKRMVALSFSKHVILKINVPRGYHGA YIDPISKNKGEKEYLMNGGTKMIITRLQKGYTTMYATIAQKHSGSKTKVKHMTKQYKYWI VTLDLMK >gi|238617813|gb|GG669608.1| GENE 387 409505 - 410494 616 329 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0582 NR:ns ## KEGG: Lbuc_0582 # Name: not_defined # Def: G-D-S-L family lipolytic protein # Organism: L.buchneri # Pathway: not_defined # 67 328 78 362 396 136 34.0 1e-30 MNLKSYFNKGTRELFLLFFSFMIMQFINIQDSHAAVVDAHYRITSVKKVSLRTKAINYKS KTAMWTYPYRSNKLAKKTHWLKNYAKRSLMVTKSATLKNGLKYDFVQVANKPSVYGWVYA KNLQQMTMVSLGDSITKGWTGSSYATSPYPQLVSQQLYVLDTNLGQNNGKVVGDTNLDLT SNVTTTNFKKVDIATIAYGVNDYFHSSLTDVTQVLDDQIKGIKRQNPTIQLFGILPLNCY VTAFGTDQQSDAYSTVGYHDYTLSQLCDAEAEVYEDNGVKYLDWRSVDPDIVPTTIDTSI FGDGKLHPTQATYNQVGTDIANFLEKNLK >gi|238617813|gb|GG669608.1| GENE 388 410857 - 411474 615 205 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_2289 NR:ns ## KEGG: Lbuc_2289 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 205 1 205 205 261 60.0 2e-68 MFNWEINEPDEYSKSEHAHFVDLTTRSYITAQGQATKHTDDPEFLRIAKAAARIAKTISG GPEEDIPISGFKPYVPYPVQAVWKRNGDVEDFKIWIKQPLFVDEEAFEAALEKIHFVNTK REELHFEQLAEGIEVQTINHGPIEDGCQAFQVLNKAIQEGGYQRIRKNEHREVYIDSLPV TPDSLVLVRFAIDLNGQPAPDMVHN >gi|238617813|gb|GG669608.1| GENE 389 412035 - 413225 864 396 aa, chain + ## HITS:1 COG:BS_hipO KEGG:ns NR:ns ## COG: BS_hipO COG1473 # Protein_GI_number: 16079981 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Bacillus subtilis # 7 380 31 406 416 323 46.0 2e-88 MSTNHKPLSKKQLEETLIQYRHHFHEYPELANREFKTTETIKAILTKWGIKLLPTNLKTG VFAEIGTNVGPTVALRADIDALPIQEESGVPFSSKVPGVMHACGHDTHIASLLGGAYLLK QLEASLPGKVRLLFQLSEEDKEGALQVINDGQLKGVNAIIGFHNTPHQPIGHVGLRSGIT TGAIDKFKVTLTGVGTHASAPQNGEDPIAALGYEITELQSLISRELDPFKAAVLSITHLS AGNTWNVIPSIAFFEGTVRTADKNVRQEIKDRFFKIVNYTALAHNVKADINWYAGDPSVD NDPTLTKIVKDETAKFAPIYVQEQQLGSDDFSCYQDIIPGVYANIGNGGQVSLHNSHFTA SDHLLIVGATFFEKNAVRLLKDLKTNHQRVNNNDSL >gi|238617813|gb|GG669608.1| GENE 390 413352 - 414608 918 418 aa, chain - ## HITS:1 COG:lin0289 KEGG:ns NR:ns ## COG: lin0289 COG0624 # Protein_GI_number: 16799366 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 1 416 1 378 378 278 37.0 2e-74 MDRKDRIKLLSDLIKINTVGGREEGTAKYLSRFLESYGIHGKTIEVEPGRFNLVAEIGDK TSPVIVFEGHQDVVDIGERSKWLHNPLGAEIVGDRMYGRGTSDMKSGLAAEIITMIELKQ SGKPINGTVRLLATVGEESSTVNHMQGAQYFAKHGYLDDVSAAIVAEPSSEPLDWLTQDT PLNPFKFSKAQIRELVKENNSTEQYLLSFAHKGSITYETLAKGKTAHSSSPQLGINAIAP LIKAYDNEIKYFRTLHEKNAILGKTIPVVTKINGGDQLNSVPASASVYAKIRTIPEEPND AIIDHLKRIISKNNQESEADLSFKLLGNKYPVVSDPNNKLIQLLRKHGEQQLQQKLPLGG YPGGTDAAEFVKVNPTITVAVFGPGNMTAHQVDEFVELENFERFIEIYKQTVNDYFDA >gi|238617813|gb|GG669608.1| GENE 391 414898 - 415671 510 257 aa, chain + ## HITS:1 COG:PAB0721 KEGG:ns NR:ns ## COG: PAB0721 COG0500 # Protein_GI_number: 14521286 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Pyrococcus abyssi # 17 256 1 211 311 85 29.0 1e-16 MSLLISLQAIILGGFIMVKTHAIEIFDGYATEYDQWFLANKQVFLSELKLLKSALDLSST KHVLSIGCGSGLFEDTLHRQYGLPLFDGVEPSTDMAQIAKKRGLNVRIGKAESINLPARQ YDTIYFNGSSSYIKDLLAAYQNCIKALKSGGHFILIDVPKESAYGLMYMLAKIQGNYQSE ELANVLPKWPYPIELVDSAYWHTTLEKKHLLENELQLRHLRFKQTLVANPLYTNDSAEEP EDGFSKGGYVAIIAEKP >gi|238617813|gb|GG669608.1| GENE 392 415745 - 416272 484 175 aa, chain - ## HITS:1 COG:lin1974 KEGG:ns NR:ns ## COG: lin1974 COG0225 # Protein_GI_number: 16801040 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Listeria innocua # 3 171 7 176 177 217 61.0 9e-57 MEDTAIFAGGCFWCMVKPFDTMPGINKVISGYTGGHVANPSYEQVSSHTTGHTEAVKINF DPDIISYKQLVQIYWQQTDPTDAMGQFQDRGDNYRPVIFVKDEAQRKIAEASKKALEETG MFDQPIVTQIEDAKPFYPAEEEHQQFYKKNPFRFQMEEAGGREKFVKDHWQSKQK >gi|238617813|gb|GG669608.1| GENE 393 416337 - 416768 284 143 aa, chain - ## HITS:1 COG:SPy1055 KEGG:ns NR:ns ## COG: SPy1055 COG0229 # Protein_GI_number: 15675047 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 1 143 1 143 145 182 60.0 2e-46 MVEKKDLKHRLTPEQYAVTQEAATEAPFSGQYDHFYQEGIYVDVVSGEPLFSSKDKYDAG CGWPSFTKPIEQTSIHKNLDTSHGMIREEVQSNDAHSHLGHVFGDGPKEAGGQRYCINSA ALKFIPADELEEAGYGQYKPMFN >gi|238617813|gb|GG669608.1| GENE 394 416928 - 417857 924 309 aa, chain - ## HITS:1 COG:BS_yybQ KEGG:ns NR:ns ## COG: BS_yybQ COG1227 # Protein_GI_number: 16081107 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Bacillus subtilis # 1 309 1 308 309 329 55.0 5e-90 MSKELVFGHQNPDTDAIVAAKAYSYLQNQLGYDTEAVALGQPNPETNFVLNYFDETTPRV IKTASNEVDSVMLVDHNEFQQSVSDIKDVKITHVVDHHRISNFQTELPLYYRAEPLGCCS TILVKMFDENKIEIPAQLAGLMLSAIISDTLLLKSPTTTDDDKIAVKTLAEIADIDYEKY GIEMLKAGTNVAAKSDQELIDSDAKSFTMGGKSVRIDQINVVDFDDIDKRQDDIKKAMSA EASDKGYDLFLVLVTNVLNSDSKLIAVGSSLDAVEKAFNEKFASDNTMPLPGVVSRKKQV VPPLTDALS >gi|238617813|gb|GG669608.1| GENE 395 417886 - 418845 753 319 aa, chain - ## HITS:1 COG:BS_ywbI KEGG:ns NR:ns ## COG: BS_ywbI COG0583 # Protein_GI_number: 16080882 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 12 220 4 210 301 94 25.0 2e-19 MKTTQESIFSSKTLSYFLQLADTMNYTQAAQILGITQPALTQQIKKLERTVGTSLFYSVG KKLRLTDAGYIMLKTTHQIYDLLNDATDEIQQATSSTTGEINLGILASIETKVFEDFALE LYHENPDLVVNFHMLTRKEIWESLENNKIDLAIMYLPDESIKNWKPYSSKKIISDDLLLI HHNQDLSKKKKVHLKDVNDRPWVMYPQDYYLNQTLRETFKNQMVDFPTAAARYTMPEQIL KFAINTGTNTALPKSYMVNINLKDLTNDDIFVSEFDPKIKFDLKFVYRKNKNEIPRIGRF LSKFDEFLNTKDYLSRLAD >gi|238617813|gb|GG669608.1| GENE 396 419050 - 421488 1768 812 aa, chain - ## HITS:1 COG:SPy0910 KEGG:ns NR:ns ## COG: SPy0910 COG0188 # Protein_GI_number: 15674931 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pyogenes M1 GAS # 1 796 1 810 819 858 55.0 0 MSKIENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFR KSAKSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTE ARLSKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPP HNLGEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGAIVQGIDGIKKAYETGRGKVIVRS KTKIEPLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKKVDGISEVRDQSDREGMSIVI ELKRDVDSTGILNFLFKNTDLQISYNFNMVAIDHMRPERLSLKQILVSYLEFQQEVIKKR TQFDLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVKTYQFSEKQSDAIV ALQLYRLTNTDVTQLEKESQELSDKITGFKKILADPKELNKVLARELRAIAKNYRNPRRT EIQDKVATIKISTDVIIPDEDVVVMVSHDGYIKRSSIRSYKASGNENGLKDEDYPIFMRQ MNARDHLFMFTSKGNLIYRPIFEIADVRWKDTGEHISQTIGLDNDEEIIGTFAFSSLKEK GVFLIATDDGHIKRTKLTDLAPGRTYKKHAYMYEKLKDPESRIVAIDYLADPDASGKLLL ISKLGLALRYGIDEVPINGARTTGVKSQNLADGDVITNLKLVNDDDVIAIVTQRGAFKKL AVKEIPATSRARKGVMILRELKQNSHRVVDFTVIDNEDTPLEVLTDHQRVHDILPNEFSL GGRYSNGSFVIDVESEGTPVKIRRKPTELTIN >gi|238617813|gb|GG669608.1| GENE 397 421510 - 423465 1802 651 aa, chain - ## HITS:1 COG:L0290 KEGG:ns NR:ns ## COG: L0290 COG0187 # Protein_GI_number: 15672961 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Lactococcus lactis # 1 642 1 641 644 902 70.0 0 MVKQKQKYDDSSIQILEGLEAVRKRPGMYIGSTDYRGLHHLVYEIVDNGVDEVLAGYGDM IRVTIHKDNSITVVDHGRGMPVGMHASGKPTPEVILTQLHAGGKFGQGGYKTSGGLHGVG ASVVNALSTWLKVTIVRDGYKYEEDFKDGGHPVGTLRKLGKTKEHTGTTVSFKPDSSIFT NTVYNFSTLSERLRESAFLLKGTKIILIDERPGQEQEETFHYEDGIKEFVQYLNEDKHTL GDVMYFDGTKDGVEVEVAAQYNDGYSETMMSFVNNVRTKDGGTHEAGLRNAWTKAFNDYA RKVGLLKDKDKNLEGSDVREGLSVVLSLRIPEEILQFEGQTKEKLGTPEARSIVDNVVSE KLGYYLMENGEFAQMLVHKALRARQARQAARRARDETRNGKRHKKQERLLSGKLTPAQSK DYSRNELFLVEGDSAGGSAKQGRDRRYQAILPLRGKVLNTERAKLPEIMKNEEINTMIYT IGAGVGADFNIEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIDKGRVFIALPPL YKLQKGAGKKAKIQYAWTNEELDSVSKTFGKGYSLQRFKGLGEMNADQLWETTMDPATRT LIKVRIDDAALAERRVTTLMGDKVEPRRKWIEQNVKFNLEEEGSILDNTAK >gi|238617813|gb|GG669608.1| GENE 398 423644 - 424240 428 198 aa, chain + ## HITS:1 COG:BS_yneS KEGG:ns NR:ns ## COG: BS_yneS COG0344 # Protein_GI_number: 16078868 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 1 186 6 190 193 167 54.0 1e-41 MLVTAYLLGSIPSGVWIGKLFFHIDIRRHGSGNIGTTNTYRVLGPIAGSIVMAMDISKGA VATLLPVFFNNTTFNPLLFGLAAILGHTFSIFDKFKGGKAVATSAGMLLAYKPSFFFLAA GIWILVILLTSMVSLASIIAFPCVTIAIFFIHDTYLFILAAVLTVFIFYRHRANIKRIIN GTENMVPFGLGHILRNRH >gi|238617813|gb|GG669608.1| GENE 399 424411 - 425283 738 290 aa, chain - ## HITS:1 COG:CAC3032 KEGG:ns NR:ns ## COG: CAC3032 COG2017 # Protein_GI_number: 15896283 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Clostridium acetobutylicum # 2 288 3 295 298 217 40.0 3e-56 MITLKNQYLTVLVNEFGAELTSVKAEDGSEYVWQADPTYWKRHAPVLFPIVGRLKDNQYS YQGNTYEMTQHGFARDNQFQIEDHQETSVTLLLTENAETLTKYPFKFQLRVRFELKDHEL GVRFSVKNSSDKSMLFSLGAHPGFNVPFAGEGGFNDYFIRVAPKKAYQRIPLKPPYSDPN DLQELDFTKPLALNHDLFDSDALVLDLKGQQTTLMLANTHNDHGIALSLKDAPYVGVWSP YPKQAPFICIEPWWGLADTVDADGKLEDKFAINRLSGEQQFDAGYQISFF >gi|238617813|gb|GG669608.1| GENE 400 425306 - 426751 1273 481 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 17 481 7 466 466 494 56 1e-138 MSFLKKYRGEIQLTESTQTPKEIVEVLDQYIVGQNEAKKAVAVALRNRYRRMQLSKSMQD EISPKNLLMIGPTGVGKTEIARRLAKIVKAPFVKVEATKFTEVGYVGGDVESMVRDLVEN AVLLERNDEYKDVRTDAEKQANNQLVKLLVPTQKKKNRQNDMQNLMNMFTQMQNGQMPSE NDDQEEVTDDIREKRMSVSDKLRAGLLENEEVEIEMDDPSQQASGQNSMMNQMGIDLNDT LSGLMPKKKIKRTVPVSEAREILIRQASEDLVNKADLYHNAIIRAENTGIIFIDEIDKIA PGKAQNSGEVSREGVQRDILPIVEGSQVNTKYGPVNTDHMLFIGSGAFAESKPSDLIPEL QGRFPIRVELDDLSKDDFVKILTEPTNSLTKQYIALIGTDNIKVTFTIEAINRIAEIATE VNHNTDNIGARRLHTILEKLLEDILYEGPDMQMGDITITEKYVDDKVGKLAGNKDLSRYI L >gi|238617813|gb|GG669608.1| GENE 401 426729 - 427271 572 180 aa, chain - ## HITS:1 COG:BH2464 KEGG:ns NR:ns ## COG: BH2464 COG5405 # Protein_GI_number: 15615027 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Bacillus halodurans # 1 180 1 180 180 218 63.0 6e-57 MPIKFEATTIVAVRHSGHLAMAGDGQVTMGEKVIMKGTAHKVRRIYGGKVVVGFAGSVAD AFNLEERFEKKLSQYDGDLKRSAVELAQDWRGDQQLQKLEALLIVMNDKDLLLVSGQGEV IEPDDDILAIGSGGNFALAAATAMKHHAQSMSAREIAEAAIHIAGNIDIFTNQNVISEEI >gi|238617813|gb|GG669608.1| GENE 402 427283 - 428215 515 310 aa, chain - ## HITS:1 COG:lin1316 KEGG:ns NR:ns ## COG: lin1316 COG4974 # Protein_GI_number: 16800384 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Listeria innocua # 10 301 11 299 300 301 56.0 1e-81 MDDRKNMDWFLKYLRSERHYSEDTVQAYQNDLTEFLKFLNETSKDHTSLIKIDSLDVESY LTGLYDKKYARNSIAQKVSALRSFYSFLIKNEVIKNNPFEYVHLKNQNRRLPRFFYPTEM QALFSAAKKGERKLAFRNSAILEVFYSTGIRVSEGVTIQLKDIDLENQLILVTGKGRKQR YLPFGKPAKQAVENYLKESREPLMTKYHQKHDYLFINHFGKPLTSRGIEYILDGIIKQSS LTTNIHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSHLMNDYQKYFP RNNQSLKPKK >gi|238617813|gb|GG669608.1| GENE 403 428415 - 428777 604 120 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227510443|ref|ZP_03940492.1| 50S ribosomal protein L19 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 120 1 120 120 237 100 8e-61 MRQNKLIDMINEKQLRNDMPDFRAGDTVRVHVKVVEGNRERIQLFEGVVIKRKGSGIQAT YTVRKVSNGVGVERIFPLHSPRVDKLEVIRHGRVRRAKLYYLRALQGKAARIKASVRPRG >gi|238617813|gb|GG669608.1| GENE 404 428870 - 429655 761 261 aa, chain - ## HITS:1 COG:lin1906 KEGG:ns NR:ns ## COG: lin1906 COG0336 # Protein_GI_number: 16800972 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Listeria innocua # 1 237 1 235 245 288 58.0 6e-78 MRIDVLSLFPEMFAVPMHDSIIGRAIENQTIDLEVTNFREFTEDKHRHVDDYPFGGGAGM LLQAQPIIDAYDHTKVVSQKAGYPAGKVILMDPAGKTFTQQDAEKLSSDEHLTFVCGHYE GYDERIRSIITDEYSLGDFVLTGGELPAMVMIDAITRLIPGVLGNNQSKVEESFSTGLLE EPQYTRPADFRGMKVPEVLMNGDHKKIALWNQKEALRRTYLRRPDLIDHRKLSSIQKKLF ADVRIEEEEKQADKKKPFTED >gi|238617813|gb|GG669608.1| GENE 405 429645 - 430169 472 174 aa, chain - ## HITS:1 COG:SP0778 KEGG:ns NR:ns ## COG: SP0778 COG0806 # Protein_GI_number: 15900672 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Streptococcus pneumoniae TIGR4 # 1 174 1 172 172 172 54.0 2e-43 MDYYNVGKIVNTQGLKGEVRVIAITDFPEKRFKKGNTIFAQTEKSKALISLEIDGVRKHK GFVLLHFKGYPTINDVEFLKPSTLLIGATSLSDDDLKPGEYYYHQIIGLDVYEGDNLIGQ IKEILSPGANDVWVVQRKAKKDLLLPKIDSVVKEVDLKNHKINVEIPEGLDDAN >gi|238617813|gb|GG669608.1| GENE 406 430235 - 430483 301 82 aa, chain - ## HITS:1 COG:L9737 KEGG:ns NR:ns ## COG: L9737 COG1837 # Protein_GI_number: 15673550 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein (contains KH domain) # Organism: Lactococcus lactis # 4 78 5 78 79 76 57.0 1e-14 MVSVDRLIKKIVSPLVDYPDEIQISHNESDRFMEYHLQLNEEDVGRIIGKHGHVIQTIRT VVYSVPVNGPKKARLIVDDEKQ >gi|238617813|gb|GG669608.1| GENE 407 430501 - 430776 469 91 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227510447|ref|ZP_03940496.1| 30S ribosomal protein S16 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 91 1 91 91 185 100 4e-45 MSVKIRLKRMGSKKRPYYRIVVADSRSPRDGRFIENVGTYSPLTQPAKVTLEEESIMNWL NNGAQPSDTVRNLLSDAGIMKKYHDAKYSKK >gi|238617813|gb|GG669608.1| GENE 408 430884 - 432320 1427 478 aa, chain - ## HITS:1 COG:SP1287 KEGG:ns NR:ns ## COG: SP1287 COG0541 # Protein_GI_number: 15901147 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 443 1 443 523 525 62.0 1e-148 MAFEGLTERLQNAMKKLRGKGKVSEADLRATMREIRLALLEADVNFQVVRTFVKTVEERA KGAKVLEGLNPSQQIVKIVDEELTKTMGQEAVPLNKSEKIPTVIMMSGLQGAGKTTTVGK LALKLKNEQNARPLLIADDVYRPAAIEQLQTVGQQVDVPVFQLGTDVDPVEIAKRGLEKA KEDHNDYVIIDTAGRLQIDEKLMDELSNIKKAVNPDEILLVIDAMTGQNAVATAEGFDKT LDVTGVVLTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMEDLDVFHPDRMASRILGMGD MLSLIEKTQKEYDQKQAEELSEKIKENTFDFNDFLDQLDQIQKMGPLDEIMKMIPGMANN PALQNVNMNPKDMDHLKAIIYSMTEQERTDPDVMNPSRRRRISRGSGRPIQEVNRMIKQF GQMKTMMNKVSKGNMSGMENMMGQTGMGGKLSKLAMKQFGRKMKKNKKKRLKKKRKKH >gi|238617813|gb|GG669608.1| GENE 409 432334 - 432681 338 115 aa, chain - ## HITS:1 COG:SPy1201 KEGG:ns NR:ns ## COG: SPy1201 COG2739 # Protein_GI_number: 15675166 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 4 113 5 110 113 99 56.0 1e-21 MANELEKTNYINSLFEFYEPLLTRKQANYIQLYYADDFSLGEIAEEYEISRQAVYDNIRR SEKILQQYEDKLNLYHSFIERNDKLDQIQAYAAKHYPHDAELNKMISSLETTEEE >gi|238617813|gb|GG669608.1| GENE 410 432818 - 434269 915 483 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 175 483 19 326 336 357 57 7e-97 MGLFDIFRRRSKKNKDEEKEKKEQETRSVQDQQQATEESKSVEQEVKQESSHQNEPESAA KSKNEDSMADETKDSSASFSKDSQNTEKTTPVAQASTPDVSEAVEPEAKPTTEPSKSNVH DEDKKPEEPRDTGVTDKAQTIDEEPDSDVDGHSKVPEAPETAGMDSEAASESGATQSYEK GLAKSRSSFGQKLNALLANFRHVDESFFDDLEDMLIESDVGFETSMKIADDLREEVKLQN AKKPKDVQNVIVKKLIDMYDQAGNGENPAINLAKSGPTVILMVGVNGVGKTTTIGKMAKM YKDQGKKVVLAAADTFRAGAIEQLNVWAQRDGVDIVKSKPKSDPSSVVFDAVKKARDEHY DILMVDTAGRLQNKVNLMNELSKMKKILTREIPEAPHEVLLVLDATTGQNAMTQAKMFKE ATDVTGIVLTKLDGTARGGIVLAIRSELHLPVKYVGLGEKVTDLKPFDPNDFVYGLFKGL ISE >gi|238617813|gb|GG669608.1| GENE 411 434270 - 437746 2083 1158 aa, chain - ## HITS:1 COG:lin1918 KEGG:ns NR:ns ## COG: lin1918 COG1196 # Protein_GI_number: 16800984 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Listeria innocua # 1 1151 26 1179 1186 617 36.0 1e-176 MTGIVGPNGSGKSNIAEAIRWVLGEQSAKNLRGSRMPDVIFSGSADRRSLNMAAVTLLLD NSDHYLDSPYSEIKVSRKLFRNGDSSYFINEKQCRLKDIASLFMDTGIGQGSLSIISQGN VEEIFNSKPVDRRSIIENVAGVYKYKRQKSTAQAEIVQTSDNLDRVNDIIHELKVRLKPL EEQSSQATDYLDQKKRLDELEKEQLIMNAKGQILQEQVLAQKVSGSQQVVKRLTAQVHQK EQQRDKLKKTLNSGRQRVDKLNTTLVSIATRIESLKSKQQLSSQESSFKNADMKRVSNQL GTIDQQLSELEKKLARSSKLVNQTQVALTVNRSNLRKVQQAADENSVPVIEEKIKKGHSR YFDLLQQQSDLKNQILMNQKDAQRFNEQTGAQQQRIGRANSDLENLESQIRDKDEAYQGS VKKLQNEQQKLTDLKRLLKQKTDLVNDTQSNWLSALKIAEQAKAKVNSLKNLHDSYRAFY RGTANLLRHRSALEGIYGPVSDYVKVNDRFVKAIETALGSQAQHIIVRDNTSASAAIKFM TKNRYGRVTLLPVSTIKSRFLNAGIVSSAKQVSGYVGIASNLVSVPEEFQAILDFLLGTT LIAETLDDAVQLSQQINHRTRIVSLDGQIVNAGGSLTGGANRSEGQGVLVQKSELEKLEV STKEMSVKLTDKEHQLQIAKQELQKIQASFDRGRQLVFQSGQMVDAQKSALDSLRASKTS QKRELDALKLSLHNVKQQNQDSSDQNLALKKSQLDQEITQVASAIEKNQSLLSDVKKNAE SFEKQKQSLHDQIVISKEQLQHYQDDQKRLSSQFDQLKNQRQDLETQLKNLQADLAEQID PEEITKLIKESSDKQGALTTSLKTQKELVDRSDKQYDQLQNDIRNQQMNLNNATYELKNN REDFQNLQKSLDGSLNQLSHDFGILKSDLSHTEWHWDLETISRQIKLLRTGINEIGPVNI SAIQEFQDVSDRYDFLLKQQQDLTDAKNHLTSTMGEMDTTISKKFQTTFDKVAKSFSKVF VEMFGGGEAKLVLTDPDNMLTTGIEIMVKPPGKNYRSLSLLSGGEKALTAITLLFAIIKV SPVPFCILDEAEAALDPFNADRFARYLKKFGDETQFIVITHRKETMIYADTLYGITMQES GVSKVVSVNLDNLKTEVS >gi|238617813|gb|GG669608.1| GENE 412 437836 - 438525 649 229 aa, chain - ## HITS:1 COG:lin1919 KEGG:ns NR:ns ## COG: lin1919 COG0571 # Protein_GI_number: 16800985 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Listeria innocua # 2 224 7 229 229 219 49.0 4e-57 MLKQDFNIHIDDQDLLDEAFTQASYVNEHRDQHLKFYERLEFLGDAVLQLIVSEYIFKRY PKLPQGRLTRLRAAMVNEQSFSTFARECHFNKYIRLGKGEEKAGARDRDSLLCDIFESFV GALYLDQGKTVVEGFVQQVIFPKLDEGMFAKFFDHKTELQELAQADGPVDIDYELVDEYG PDNDRLFKVNVAIDDKLLGVGIGHSKKDAEQRAAQEALKHFSKREDNLV >gi|238617813|gb|GG669608.1| GENE 413 438606 - 438851 296 81 aa, chain - ## HITS:1 COG:PA2966 KEGG:ns NR:ns ## COG: PA2966 COG0236 # Protein_GI_number: 15598162 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Pseudomonas aeruginosa # 9 80 7 78 78 59 44.0 2e-09 MDKNEVFNKIADLVADQFDIDREKITGSLNFRKDLDADSIDFVEFVLDLEDTFNAEISDD DAEKLNTIDEAVDYVMSHQKD >gi|238617813|gb|GG669608.1| GENE 414 438900 - 439943 1098 347 aa, chain - ## HITS:1 COG:SP0037 KEGG:ns NR:ns ## COG: SP0037 COG0416 # Protein_GI_number: 15899983 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Streptococcus pneumoniae TIGR4 # 2 323 3 321 330 339 56.0 6e-93 MKIAVDAMGGDYAPKEIVEGIELARDAYPDIEFLLFGLTDQIQKYLKDDTRIEIKQADEV IEMGDEPVKAVRTKKQSSMVLAATAVKEGQADAFFSAGNTGAILASGLFIIGRIKGIDRP GLATTLPVITKDDQKNFVMLDVGANADTKVLNMYQYALMGKYYASNVMKVNNPRVGLLNN GTEADKGDMDHRKVHDLLADDSDIHFIGNVESRELLNGAADIVVTDGFTGNAVLKSIEGT ALSMLHLIKGSIMSGGMTSKLGAAMLKGTFGQIAKSMDYSQYGGAVLMGVKAPVVKTHGS SKAPTVKNTIGQIKQMIDSKMISDLNNYLNSHTDQLQEIKETIKNSK >gi|238617813|gb|GG669608.1| GENE 415 439956 - 441986 1326 676 aa, chain - ## HITS:1 COG:BS_ylpB KEGG:ns NR:ns ## COG: BS_ylpB COG1200 # Protein_GI_number: 16078650 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Bacillus subtilis # 7 659 8 662 682 602 46.0 1e-172 MTSLNDSVAVLKGVGTKRLVALNKLGINTINDLLTYFPRRYDDLSIKDLSNAIDGQKVTV KGMVIAPPTLTYFGRKKSRLVFRLKINDNIYTVSFFNQPWLKKEVNPNDEIIVFGTYNRS RNQIQGMKILTDQSSNSFDSIYPANKEVKQATIKSLIKMAYDMYHTQLTNVIPDQLRAKY RLESFPDTIRNIHFPESPQAAQRAFRTAKFMEFFLFALKVQILKESHRKTDPHAQIHYQQ SLLEKFQKSLPFDLTPAQQKVVREILADLNRPIQMNRLLQGDVGSGKTVVAAMAILATIS AHKQAAIMAPTEILAEQHANNFAKMFDGLDVNIALLTGDTSAAARRAMLPSIQSGEVDLI VGTHALFQNDVQYDNLGLAVIDEQHRFGVNQRQALRQKGTSTNMLAMTATPIPRTLAITM YGDMDVSIINQLPSGRKPIKTTWITSAKTNSAIRFVKKQLDNGNQVYVVTPLIEESEAVD MKNAVAIFERFKTIFEPQFKVGLLHGQMSNQEKDDTMVSFKNNQFQVLVATTVIEVGVDV ANANTMLIFDADHFGLAQLHQLRGRVGRGSTQSYCVLIADPKNELGKERMKAVASSTNGF FLSQKDLELRGQGDITGAKQSGMPDFKVADPVGDLNILTVANQEAQNITAEKHWKNKPEN VQLAKYLQFNQTINYD >gi|238617813|gb|GG669608.1| GENE 416 442149 - 443864 1557 571 aa, chain - ## HITS:1 COG:SPy1885 KEGG:ns NR:ns ## COG: SPy1885 COG1461 # Protein_GI_number: 15675702 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Streptococcus pyogenes M1 GAS # 3 571 1 554 554 535 51.0 1e-151 MKVTEITNTEFTAMVQAASNKLNKNTDFINSLNVFPVPDGDTGTNMSLSLASGYKYVNKD VSTSVGSLCSSLAKGLLMGARGNSGVILSQIFRGFSKSTENKETLSAQDLADAFVSGTET AYKSVMKPTEGTILTVIRMAAQAGKKTAATTNDIVAVMDAVYENSKIALKKTPDLLPVLK QVGVVDSGGQGLMFVLEAFDDVLNGRIDAEKGEYQPTDAEMTEMIDAAHHQSVQSKLDPD DIVYGYCTQIMVRIGKGKEVDRKFDYQTFYDYLAKLGDSLLVVNDEEIVKVHVHTEHPGK VLAWGQEFGDLATVKVDNMRLQQETIIENDDEKDIPSPIQKAESIDAKADQPVSDTAIIS ISSGKGLNDLFKSLGVNYIVNGGQTMNPSTADIVNAIQETHAKQVIVLPNNKNIFLAAEQ AAEVVDIPTVIVHSKTISQGITAMLGFNPENALDENQKAMEDNLPTVKSGQVTTAIRDSN IDGLEIKKDQYMGIADGKIVTVDDDLIKTAVSMVGKMLDDDSEAITIIWGDNANERLADK VQAGIIQLDDELEVEVHEGDQPVYPFLISVE >gi|238617813|gb|GG669608.1| GENE 417 443897 - 444262 509 121 aa, chain - ## HITS:1 COG:lin1929 KEGG:ns NR:ns ## COG: lin1929 COG1302 # Protein_GI_number: 16800995 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 120 1 120 121 126 59.0 1e-29 MAVKIKTKFGTVDIDNDVIANVVGGAATDNYGVVGMASRNQIRDNMNDILNRENYFKGVE VKQHNNEIVINVYIIVAYGNKISEVAKAVQAKVKYDLQSMLGVTANSVNVIVQGVQVANE D >gi|238617813|gb|GG669608.1| GENE 418 444489 - 444674 316 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227510458|ref|ZP_03940507.1| ribosomal protein L28 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 61 1 61 61 126 100 2e-27 MAKDFISGKRTHFGNKRSHALNSSRRSWKPNLQKVRILVDGKPKKVWISARTLKSGKVTR V >gi|238617813|gb|GG669608.1| GENE 419 444845 - 445375 376 176 aa, chain - ## HITS:1 COG:MA1774 KEGG:ns NR:ns ## COG: MA1774 COG0778 # Protein_GI_number: 20090624 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Methanosarcina acetivorans str.C2A # 4 164 35 211 220 59 26.0 3e-09 MKTIDAIINRKSVRTYTGEMISDNDLNQILITAYASPVSMGKYDSLSLTVITSQDWLQRL DQNAQQIFNVSQSMLYGAPLFIIASTKLQGTPADNAAYSNAATIIENMNIEAVALGIGAC HIWGVITALNQNKTLMKEMKLPEGQIPVAGLVLGKTNEKYEQRHIPMDRIKTQTLD >gi|238617813|gb|GG669608.1| GENE 420 445597 - 446259 650 220 aa, chain - ## HITS:1 COG:lin1931 KEGG:ns NR:ns ## COG: lin1931 COG1564 # Protein_GI_number: 16800997 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Listeria innocua # 1 215 1 214 214 185 44.0 5e-47 MKVLNLLVGGPVDLWPAELKAGKINGDWIGIDRGNLHLIDMGIDPIVAIGDFDSLKTEEL KLVKTHIKDIRQSIPEKDDTDTQLGLKVAIEEHHADRLDIYGATGGRLDHFLANLWMVLE PRFKKYAPKIRMIDKQNTITFFLPGEYDIKKEPDKKYLAFVALTPMDHLTLFDEKYKLND YQVKRPVSLASNEFVGNKARFKFASGVMCVIQSKDINRFN >gi|238617813|gb|GG669608.1| GENE 421 446259 - 446912 767 217 aa, chain - ## HITS:1 COG:SP1983 KEGG:ns NR:ns ## COG: SP1983 COG0036 # Protein_GI_number: 15901806 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Streptococcus pneumoniae TIGR4 # 3 203 5 205 218 250 59.0 1e-66 MIKIAPSILSADYVNLQRDIEKVDKGGAELLHIDIMDGAFVPALSYGPGWVKAIKPITNL TLDVHMMVQNPERYIDDFADAGADIIGVHTEATPHIHRALQMIKNRNVKAEVVINPGTPV SAITPVLYMVDQVLVMTVNPGFGGQKFLPETVKKIAELDKIKKEQGLNFDIEIDGGVNET TVVGAYKAGATVAVAGSYIFDADDPVSKIKALKDATR >gi|238617813|gb|GG669608.1| GENE 422 446924 - 447817 431 297 aa, chain - ## HITS:1 COG:lin1933 KEGG:ns NR:ns ## COG: lin1933 COG1162 # Protein_GI_number: 16800999 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Listeria innocua # 1 295 1 291 291 296 50.0 4e-80 MTKGKIYQSLAGFYDVHTADDKVYRTRARGNFRKRKITPLVGDDVEFQIEDGDKGYILEI LPRKNSLVRPPIANIDQAIVTTAATQPEFSSNLLDRQLIALEISQIQPIIYFTKTDLLSE SKRQELATIAADYAKIPYEVILPDSAFSDEALNRLRKLFSKKENVIMGQTGAGKSTLLNH LAPNLDLKTGEISAALNRGKHTTRRVALLNVNDGLIADTPGFSSYDTLDIDFRELAGYFP EFKRASSKCRFRGCMHVNEPDCEVKRQVESGQIMKSRYENYLQLYTDIKNRKPNYKK >gi|238617813|gb|GG669608.1| GENE 423 447901 - 449970 1459 689 aa, chain - ## HITS:1 COG:lin1934_1 KEGG:ns NR:ns ## COG: lin1934_1 COG0515 # Protein_GI_number: 16801000 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Listeria innocua # 1 294 1 294 342 332 56.0 1e-90 MNKGFVLNGRYKIISRLGEGGMADVYLAEDLILNREVAVKLLRLDFRDNPKAKKRFQHEA MAATELDNPHIVGIYDVDEVEGMQYLVMEYVDGEDLKHYIKDRFPIPYAEVVNIMEQICS AVSEAHHHNIIHRDLKPQNILVDKNGYIKITDFGISRLESEDTMTQTKSIIGSIHYLSPE QIKGQMATKQSDIYSLGIILYEILTGKVPFNGDTAVSIAIKHSQQPIPSVRDFDPRIPQA LENVVLKATTKNPHDRYPDVNALAADLNTSLDKSRADESRFVVPEENAEMNEKTRVMPFS AFPENSMTDNANADQREAQETNQSDEKRPKRKNHKRRRRWLIGGIIGFLVLIFAVIFIVS ASARTTVPVISGTLRNDATEKLEDADLRVGKISYRNSEKVDRNRVITSTPKENTKVKKNT RVALIISSGIKKVRLDNYVGQDYDEVKSRLEAQGFKVRRRNAPSGSFQSGKILQQDFASG KRVNPKGHTLTFVVSTGIQQVILKDLTDMTKAQVVSYANKEKINPTFDYVYSNEQKKGRV VRQSPAANNSIQQGGNIIVWLSRGPQAKAKDQLESFNVKVTIPYFSNSNNSQSSSSSAFS SSVQPQTSSSETPAPETEASTTGSGENVVLIYLKDHDHDYSTVYKQMVITRDTTVMLPFK LTKNEVGRYKVVRDGKTILRDNNITYDSH >gi|238617813|gb|GG669608.1| GENE 424 449963 - 450712 683 249 aa, chain - ## HITS:1 COG:BS_yloO KEGG:ns NR:ns ## COG: BS_yloO COG0631 # Protein_GI_number: 16078639 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Bacillus subtilis # 1 238 1 240 254 190 42.0 3e-48 MQIAYQSSTGKVRDKNEDAVGKFENKQGLILALITDGIGGNNAGEVASKMVVTHIGSSFE KTDINSLSDIKSWFIEKLAQENAAIINQSNSDRRLKGMGTTMVAALIDGDESLIANIGDS RGYVLSGGKLTQITEDHSYVNELVKHGDITPDQAKNNPYKNIITKSLGINDDSSADFKAY SIQKNDQILLCTDGLTNMVDDPDIEEILSMDEDIQAKCNLLVSLANKNGGLDNITVLVAR YDSEVMPDE >gi|238617813|gb|GG669608.1| GENE 425 450728 - 452062 1007 444 aa, chain - ## HITS:1 COG:BS_yloM KEGG:ns NR:ns ## COG: BS_yloM COG0144 # Protein_GI_number: 16078637 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Bacillus subtilis # 9 443 7 446 447 364 41.0 1e-100 MKYQTNNPRELAVRTLLRTSGGSYSNLQINAVIESTSMSDVDKALFTNIVYGVIQHRMTL EYQLVPFLRDPEKTEDWVKELLYTAMYQLEYLDRVPKRAIFDESIKIAKSMGHDGTRRFV TGILHQMDRKGVREPDKIEDPVKKISIKYSVPEWLVSLIEGQLGKQKADQVFKSLNQAPK QSVRFNKAKTTKSKLTDQLTQAGFQTEDSLVAGEGIIVDKGQVVHSAFFENGLLTIQDES AMLPVESMSIQPDDLILDACSAPGGKTTQIAADLKNGRVIALDIHQNKLKNVIRNAKRLG VDGVVETQALDARKVDEKFSDEMFDHILVDAPCSGFGLMRRKPEIRYDKTLADINHLSQI QLQILEAVAPKVKTGGTITYSTCTIVQQENQEVIKQFLDAHPDFQIEPTKTDLNLTTDEN GMINIYPDDFGSDGFFVCSLVRKS >gi|238617813|gb|GG669608.1| GENE 426 452063 - 452989 841 308 aa, chain - ## HITS:1 COG:L0362 KEGG:ns NR:ns ## COG: L0362 COG0223 # Protein_GI_number: 15673875 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Lactococcus lactis # 1 305 9 316 319 313 55.0 3e-85 MGTPSFGVPVLKGLVDQGYQVLAAVTQPDRPVGRKHQIQKSPVKQQAEALNIPVLQPEKI SGSDEMQQLIEMHPDLIVTAAFGQFLPTKLLNAVKIAAVNVHGSLLPKYRGGAPVQYAIL NGDKETGISIIYMVKKMDAGDILAQQAIPINNTDDTASMFAKLSLVGRDLLLKTLPKVIS GEITPIKQDPEKVIFSPTIKPEEEKLDFLKSAFLVDAKVRALRPDPTAYTTLNGKRTKIW KSAVVDGQTPLEPGVIVEKTKHQLQIAAGGGSILEILELQPAGKPRQAITDYLNGAGQAL KVGQKVIN >gi|238617813|gb|GG669608.1| GENE 427 453035 - 455431 1388 798 aa, chain - ## HITS:1 COG:lin1938 KEGG:ns NR:ns ## COG: lin1938 COG1198 # Protein_GI_number: 16801004 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Listeria innocua # 1 798 2 797 797 775 48.0 0 MQVAQIIVDVPTRQTNNPYSYLIPESLEKQIQSGMRVQVPFGRRRVTGFVIGLSDKTSFD GKLKKISSLVDLSPVITPELLKLSEWMADKTFSFKISCLQTMLPGGMRTKFKKKLLATDQ IRDTYPAIFHGQNEIDYDRQKFNNKTIAEILALRKSNQIKVHYELSSHAKPILSRAYKSK LNQQQIDHVLIDVQKRAVGQRRLLKMLYEQPSQTFLQSKLLHEGVGKQVLDTAVKQGWVT ETQVRRIRNPFLQPVSKSYPLDLNEDQQTAVNRINNAIGKQTDTTFLLEGVTGSGKTEVY LQAMAHALSIGKTALMLVPEITLTPQIVGRIRSRFGDQVAMLHSAMSSGERYDEWQRINS GQAKVVVGVRSAIFAPLENIGLIIMDEEHDSSYKQSDTPRYQTRDVAKWRAAYNHCPVVL GSATPSLESRARAMKGVYQLIMLPHRFNNHALPHVSIVDMKDEMAHNRHILSKRLSNLIT DRLEKHEQIILLLNRRGYSSFIMCRDCGYVPQCPNCDISLTMHKDTHTLNCHLCGHKEPI PTVCPKCHSKRIRHYGIGSQQLEEQVKDLFPTARVLRMDVDTTRKKGSHEAIINKFGAHK ADILLGTQMIAKGLDFPEVTLVGVLNADSALQFPDFRSSERTFQLLTQVSGRSGRADKQG EVVIQTFNPDHYAIQLAKTQDYEKFYHTEMRIRHLGKYPPYYFTIKITGSSPSEKQTAYE MHQIAGFLRRYLTNKAIVLGPTPKTITRVNNRYFYQIIIKYRQEPKLKAALDDVLVKSQT KQQGGLLISIDNEPLDFM >gi|238617813|gb|GG669608.1| GENE 428 455457 - 456683 1022 408 aa, chain - ## HITS:1 COG:BH2510 KEGG:ns NR:ns ## COG: BH2510 COG0452 # Protein_GI_number: 15615073 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Bacillus halodurans # 6 405 1 397 404 355 48.0 1e-97 MVVTDLFQNKRVSLYVTGSIAVYKSLILTRLLVKNHNDVHVVMTESAQRFVSPLTFQSLS KNRVVKDDFSTDDPKTIPHVAIADQSDLAIVAPATADTIAKMANGIADNVVNAALLATTA PIYVVPAMNVHMLDNFATQTNLQTLTSAGINVMDTAEGFLAEGYSGKGRFPEPEEILDWV DQHFNSGSKELEGKRIVITAGGTREPLDPVRYLTNHSSGKMGFAIAKAARLAGAEVTLIT ANTTLPKPESVKVLPVETARDLLQTVQQQFVDADVLIMAAAVADFRPATVSDRKIKKNDH NETMTLNLVRNPDILKEVAITKKASQVVIGFAAETNDLITNAEKKIKAKHLDLIVANDVS QKGIGFSADNNQVTFLFANGDQQKTAVESKQKVAQQLIHILSHRLISR >gi|238617813|gb|GG669608.1| GENE 429 456829 - 457041 288 70 aa, chain - ## HITS:1 COG:SP1737 KEGG:ns NR:ns ## COG: SP1737 COG1758 # Protein_GI_number: 15901569 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Streptococcus pneumoniae TIGR4 # 2 64 1 62 103 62 53.0 3e-10 MLLYPSVDKLLDKIDSRYSLIMLASKRAHELDAGAKPLLDSYKSRKSVGKAFEEIAAGVL KIDPKNRDLN >gi|238617813|gb|GG669608.1| GENE 430 457044 - 457658 622 204 aa, chain - ## HITS:1 COG:SP1738 KEGG:ns NR:ns ## COG: SP1738 COG0194 # Protein_GI_number: 15901570 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 201 1 201 208 262 62.0 3e-70 MAKRGMLIVLSGPSGVGKGTVRKALFEEPDVDFEYSTSMTTRKPRPGEKNGVDYYFVSKE QFEQNIQNGEMLEYAKYVDNYYGTPLKYVNETLNSGKDVFLEIEVNGAMQVRANCPDAVF VFLTPPDLMALKHRLIGRGTDKMDVINKRIKKAVGEISMMRNYDYAVLNDKVPLAVDRIK SIIRSERLKVARVMPDYESMLGDD >gi|238617813|gb|GG669608.1| GENE 431 457833 - 458150 192 105 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1141 NR:ns ## KEGG: Lbuc_1141 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 103 7 106 107 81 48.0 8e-15 MQSNQSYLTEIRDTVKNNYRRFFAIDSTKPTYNDLPQMPEFQIQLFLSQTLKTGFPIKIQ FNNQSPAMGGKLTKLSNERYLLTNQQHNMTRIVNILEIRSIQKIK >gi|238617813|gb|GG669608.1| GENE 432 458310 - 460004 1453 564 aa, chain - ## HITS:1 COG:lin1405 KEGG:ns NR:ns ## COG: lin1405 COG0497 # Protein_GI_number: 16800473 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Listeria innocua # 1 559 1 560 563 505 49.0 1e-143 MLLELSITDFAIIEHLDIEFQSGMTVLTGETGAGKSIIIDAVGLLVGGRGSHDLIRTGAK KSVIQGNFILSDDNPTYEVLDELGIDHSDGNVIIEREIFASGRNSCRVNGMMINIATLRR IGETMVDIQGQNEHQELMKPERHIELLDDFAEDTIQPVLVTYQKDYDQFVKLRAINEKKH QNEKEWAQRVDMLKFQIKEIEAADLHEHEDEELTAERDRLNNFQKIHDALLNSYEGISGE DTSSLDSIGSSMSSMQEIEELDPDFKQISDDLSGAFYTLQDVASQISDQLNNLEFDQDRL DQVEQRLNTIYQLKHKYGDSVTQILEYLKKIKNELSDMSGDADDDDNLEQQLAEIKTSLI KNAKRIGDIRRRFAKELERAVHQQLRDLYMDKAVFEVRFKESTTLNRLGADQVEFYIQTN PGEKMLPLVKSASGGELSRLMLALKTMFAKAAGVTSIIFDEVDTGVSGRVAQAMGNKIYT ISTKSQVLCITHLPQVAAMSDHHYFIQKKIHDGRTTTTITELNKQDSVNEISRMLSGTTV TKLTKEHASELISMADEEKARIRT >gi|238617813|gb|GG669608.1| GENE 433 460045 - 460500 353 151 aa, chain - ## HITS:1 COG:lin1404 KEGG:ns NR:ns ## COG: lin1404 COG1438 # Protein_GI_number: 16800472 # Func_class: K Transcription # Function: Arginine repressor # Organism: Listeria innocua # 1 149 1 149 149 127 41.0 6e-30 MRKKERQRLIKQLLVSNDIQRQEDFVSLLSEQGVKVTQATVSRDIKDMQLVKVPSITGGY RYSLPTQKNVDTEKKLIQTIRDSFVSVDSQDKFVFMKVLPGSGPVISTLLYQMNYSEIFA TIGDDSTVFIVCKTDEDAADFRGRINSMVSS >gi|238617813|gb|GG669608.1| GENE 434 460533 - 461348 635 271 aa, chain - ## HITS:1 COG:lin1403 KEGG:ns NR:ns ## COG: lin1403 COG1189 # Protein_GI_number: 16800471 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Listeria innocua # 1 270 3 274 274 320 60.0 2e-87 MEKQRVDVLLVTQGLFDTRERAKRAVMAGEILGDNEERLDKPGMKISVDTELHLKGKPMP YVSRGGLKLEKALKVFGISVKDLTVLDIGSSTGGFTDVMLQNGAKLSYALDVGSNQLVWK LRQDPRVVVMEHTNFRYSKLADFSQGQPQFASIDVSFISLELILPPLKAILIPNGEVVAL IKPQFEAGKKNVGKHGIVHDPAVHKMVLEKILNFAVASGYSVENLDFSPIKGGAGNIEFL VELKSVEQPRMNPNVSIEKVIENAYSELKKQ >gi|238617813|gb|GG669608.1| GENE 435 461329 - 462243 595 304 aa, chain - ## HITS:1 COG:slr0739 KEGG:ns NR:ns ## COG: slr0739 COG0142 # Protein_GI_number: 16329282 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Synechocystis # 31 270 37 280 302 188 44.0 1e-47 MGTKLNEFIKEWTPRINQVLESKIEQDTDQQKLFESMSYSVNAGGKRLRPLLTIATLITF NQTITDSILKATCALELLHSYSLIHDDLPAMDNDGLRRGKPTNHTIYGAGMATLAGDGLQ ALAFQWVVDNDLTADTRCQLALALAKAAGPRGMASGQADDIEFEGTRLKLHELQKLDRNK TGALISYAVNAGLIMAQVPKDQKKDLLAFANNFGAAFQIYDDILDIVGDEKAIGKPVHQD ADKNTYPNLMGLDGAYEALQRTVDRARHALNTASHKLNIDTSLLLDFCSYFVIKDERHNG KTTR >gi|238617813|gb|GG669608.1| GENE 436 462224 - 462490 346 88 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1146 NR:ns ## KEGG: Lbuc_1146 # Name: not_defined # Def: exodeoxyribonuclease 7 small subunit # Organism: L.buchneri # Pathway: not_defined # 1 86 1 86 88 79 77.0 5e-14 MADSQSNETFEQKMDKLEQIVNQLEQGNVSLEDSMDKFKTGIKLSEELQETLTKAEHTMA KMMDKDGNEVQFESPDNTKDDNNGNQAQ >gi|238617813|gb|GG669608.1| GENE 437 462480 - 463763 815 427 aa, chain - ## HITS:1 COG:BH2783 KEGG:ns NR:ns ## COG: BH2783 COG1570 # Protein_GI_number: 15615346 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Bacillus halodurans # 3 378 30 406 458 351 48.0 1e-96 MKVYLTGEISNFRLRPMRHQYFSLKDDHAKISAIMFKSAFNRIKFVPEEGMKVLVTGHIS VYEPSGSYQIYVDSMEPDGVGQLYQAYEQLKKKLDKEGLFSQPKRQLVQFPKRIAVVTSP SGAVIRDIITTVRRRYPIAQIVLFPALVQGDEASTDIVKQIVKVNQLGHFDTLIIGRGGG SIEDLWPFNEENVARAISSSTIPVISSVGHETDTTIADLVADVRAATPTAAAELAVPRLD QVLVELKATQNRIINAEYQLIEQAKLRLKRLQQSTVFTSPQRIYETFSQKLDLLRQRLEN QADKITTSRKNNLSQLHMRLRLVAPTYMIKEQKQRLNVLQLRLKQNQLQNLNKVKQQYQM LVGSLDHLSPLKILGRGYTYTTDENDHFISKMADLKAKTINVHFSDGVINASINKMTKGK EDEDDGR >gi|238617813|gb|GG669608.1| GENE 438 463828 - 464694 792 288 aa, chain - ## HITS:1 COG:SP0825 KEGG:ns NR:ns ## COG: SP0825 COG0190 # Protein_GI_number: 15900713 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Streptococcus pneumoniae TIGR4 # 1 286 1 284 285 287 52.0 2e-77 MATVIDGRALAKKLNQQTSERVQKMQENDGITPGLVVIIVGDDPASQRYVRNKHRTAQRL GINSIVKQLPESVSEKELLEWVGQYNNDPAIHGILVQDPLPDQINEKDVTRAILPEKDVD GFHPVNVGKLFLNDSTKYPVSCTPKGIMTMFSEYHIELKGKNAVMLGRSAIVGKPMAALM LNQGASVSILHRLTKDITEYTKDADIIVSATGQLHTLTKNDVKVGATVIDVGQNINEKGH LVGDVDYDDLFDKVAYITPVPGGVGPMTIATLMQQSVDLAEWSIHRDN >gi|238617813|gb|GG669608.1| GENE 439 464822 - 465235 245 137 aa, chain - ## HITS:1 COG:SPy1818 KEGG:ns NR:ns ## COG: SPy1818 COG0781 # Protein_GI_number: 15675648 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Streptococcus pyogenes M1 GAS # 4 130 8 139 150 101 43.0 3e-22 MELTRHQIREIAFQTLFALNANKQTNKENFFEVLTDGKYGDEYPKYLDELTTGVVDHKEE LDNLIEKYLKSGWSINRIAKTDLIILEIALYEMLHVDDLPAKVSINEAIELAKKYSDDRS RKFVNGILSHALEELVK >gi|238617813|gb|GG669608.1| GENE 440 465235 - 465669 486 144 aa, chain - ## HITS:1 COG:BS_yqhY KEGG:ns NR:ns ## COG: BS_yqhY COG1302 # Protein_GI_number: 16079489 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 121 1 120 135 104 43.0 5e-23 MAEDTNIILRANDPELGKIELATNVLEIIAGIAASQVDGVNRMRGSFSSSVNELFSRKKE HGKGVKLTYQNEELSFDIYVYLNYGVSVPKVALEIQEQVEQQAFFMTGLQVHEVNVHVQG VIPEKTTSSVDPNNPFADEENGEA >gi|238617813|gb|GG669608.1| GENE 441 465700 - 466260 674 186 aa, chain - ## HITS:1 COG:lin1392 KEGG:ns NR:ns ## COG: lin1392 COG0231 # Protein_GI_number: 16800460 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Listeria innocua # 3 186 2 185 185 271 70.0 6e-73 MAISTADFKNGLTIEVDGAIWRILSFQHVKPGKGGAFVRSKLKNLRTGAVQEKTFRSGAK MEQAQIDQRKMQYLYADGDMHVFMDMDTYDQISIPAAQIKSELNYLQENMEVNVIQYGNE TLGVDLPNTVTLEVASTEPGIKGDTASGGSKPATMTTGLTLQVPFFVNQGDKLVINTTDG TYISRA >gi|238617813|gb|GG669608.1| GENE 442 466491 - 466784 499 97 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227510483|ref|ZP_03940532.1| ribosomal protein L27 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 97 1 97 97 196 100 1e-48 MLAMNLQFFSHHKGGGSTANGRNSAGRRLGAKAADGSSVHSGSILYRQRGTHIYPGANVS RGNDDTLFALVDGVVRFERKGRDKRQVSVYPVTEAAK >gi|238617813|gb|GG669608.1| GENE 443 466807 - 467142 560 111 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227510484|ref|ZP_03940533.1| ribosomal protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 111 1 111 111 220 100 1e-55 MIKATIHHYKGHVSGITITGHADAGEYGQDIVCSAVSVLSITTVNGLQEVVGLDVNVDSD EKNGGYLSVEIPVIANSTKQIQSDAILKTFENGMADIATSYSKYIKLNVEN >gi|238617813|gb|GG669608.1| GENE 444 467169 - 467477 520 102 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227510485|ref|ZP_03940534.1| ribosomal protein L21 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 102 1 102 102 204 100 5e-51 MYAVITTGGKQYKVSEGDAIYVEKLDANEGDKVTFDQVVMVGGDSVKFGTPTVDGASVTG TVEKQGRQKKIIIFRYKPKKGSRSKKGHRQPYTKVVIDSIKA >gi|238617813|gb|GG669608.1| GENE 445 468365 - 468622 280 85 aa, chain - ## HITS:1 COG:no KEGG:lp_0875 NR:ns ## KEGG: lp_0875 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum # Pathway: not_defined # 4 85 2 83 83 98 53.0 1e-19 MKKLLDDTKLIKNVVAAQLTKVFFPYIIVKTENQKYWKLNLSKKESQDPLFWESMEKILQ EKIWIPVGRKYHQMLDNGWELSSKS >gi|238617813|gb|GG669608.1| GENE 446 468904 - 469443 447 179 aa, chain - ## HITS:1 COG:BH3133 KEGG:ns NR:ns ## COG: BH3133 COG4508 # Protein_GI_number: 15615695 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 179 1 162 162 58 28.0 7e-09 MDLQALVSSSVYLNRQIEQKKQIFWSNEARLKNAFVSLDVELAEMANTSEWFKVWKTHRG KSDAGKTPRETLLYEYVDALDFFLLISNLKNWNHFVLKSQDDFEKIKHLKKEDNLDKQYL AMKRMLFDAYFNHSGDSFNHSWRLFLKFGLVDFGYTEQEIQDAFNDKNKINLKRQDNNY >gi|238617813|gb|GG669608.1| GENE 447 469594 - 470532 841 312 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1156 NR:ns ## KEGG: Lbuc_1156 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 3 312 5 313 313 402 67.0 1e-110 MVSNETEEKTITTNELLANYSDSVQNGLDNGSKYLQAFHTLSETTDGQSLLSAAVSLTNF KLNSDFVTFPHQFSDEDVQLIFFERLLSLSGIENNFRISNPQRVQKLLCKFDSLGDQTFT FTKSTKNSDGFFFGPTLNNRPLFYLNLKNKELMFHGASLIEYFVVDLDGLEIDAIKNALE LLTKAAAILKENFGFKIDFNVLDGVNGEFYQFAAGTLSEDVMDELFVKSAENHFVLMAED NGGASLTLGNGTKMTVYDANQNGNRPKWGATIRDDQQNENWLYLLLDYPFIKKWYLNNQK QLEILSNQFIFG >gi|238617813|gb|GG669608.1| GENE 448 470522 - 471403 552 293 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1157 NR:ns ## KEGG: Lbuc_1157 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 293 1 293 293 375 71.0 1e-102 MERQMETDQFSQNDTLLSSALNEKMQYLNDLNDSVKNGDDLQIYQLMDPNRYANELATEE TEESQTDHFGLASDLTAQLSHHLSNKLIDYLGATYPFFYYHEYELGKFHIYFGNWWDHRM FGELDPINVRFNFDDNEYQMLSKSFQLEAENRRVNDDTMQKLGDENERITKLIGEQDQRD KRKEEIREQLKENQEKSPMPWEAGKVKEERQRLNDEMLKLTQIDEEATGGRPTIKENENK ILALSKEETILSLEKQNIRATFGSFDAFIENNNNLYTKYLQSLSKESQVSDGE >gi|238617813|gb|GG669608.1| GENE 449 471591 - 472934 1115 447 aa, chain - ## HITS:1 COG:SA1150 KEGG:ns NR:ns ## COG: SA1150 COG0174 # Protein_GI_number: 15926892 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Staphylococcus aureus N315 # 4 447 3 446 446 661 67.0 0 MATRHNYSKDDIRKIVKDEDVKFLRLMFTDLFGTIKNVEVPIGQLDKLLDNKLMFDGSSI EGFVRIEESDMYLHPDLSTWMIFPWSTDRGKIARVICEVYTPDGEPFAADPRNNLIRVLA DMKKAGFTAFNIGPEPEFFLFKMNENGDPTLHLNDKGSYFDMAPMDLGENCRREIVLTLE EMGFDVEAAHHEVAPGQHEIDFKYADALTAADNIQTFKLVVKTVARKYGLYATFMPKPLS GINGSGMHINMSLFNDSGNTFFDKDGELELSQEAYYFLGGLLKHARSFTAVCNPIVNSYK RLVPGFEAPVYVAWSGSNRSPLIRIPSARGNSTRLELRSVDPAANPYLAIATVLEAGLDG LRNQIEPEHSVDRNIYRMNADELQKSHIQNLPDTLHNALKDLSADEVMKGALGERLYNSF IEAKNLEYDSYRTQVSEWERDQYLEKY >gi|238617813|gb|GG669608.1| GENE 450 472949 - 473350 290 133 aa, chain - ## HITS:1 COG:SPy1878 KEGG:ns NR:ns ## COG: SPy1878 COG0789 # Protein_GI_number: 15675697 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 124 1 120 123 133 61.0 1e-31 MREKELRRSMSVLPIGTVMKLTDLTARQIRYYEQQDLIKPVRNEGNRRMYSLNDVDRLLE IKDYLDDGLNISGIKEVYKKQEQLEDERKKNLQKGLTDSDVRKILQDEFMNIGGLKPPSS TFDNPNNFHKFNE >gi|238617813|gb|GG669608.1| GENE 451 473437 - 474288 631 283 aa, chain - ## HITS:1 COG:BH2366 KEGG:ns NR:ns ## COG: BH2366 COG0324 # Protein_GI_number: 15614929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Bacillus halodurans # 4 272 29 300 314 258 50.0 1e-68 MFRGEVISGDSMQVYRNLNIGTAKITEEEKEGVVHHLIDVRDIDQRFSVADFVSEATKLI NEISIAGNLPIIVGGTGFYLQALLDGLDLGGDRFENDTLRQQLLDQAKEHGNAALHEQLE RVDPQAAKKIPANNLRRVIRALEVYIKTGNRFSDQENQPNQYDSLIIGLTTDRKKLYDRI NHRVDLMMTQGLLKEADYLYKNGGDKLQAGKGIGYHEFYDYFKNQISLTEAVDLVKKDSR HYAKRQLTWFRNKTKPNWYDVLDFPDDVKRLEADVGNWLENRD >gi|238617813|gb|GG669608.1| GENE 452 474357 - 475103 521 248 aa, chain - ## HITS:1 COG:L1007 KEGG:ns NR:ns ## COG: L1007 COG0584 # Protein_GI_number: 15672046 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 5 244 34 277 281 189 40.0 3e-48 MQIDTKIIAHRGSRGTRPENTLVSFQTAINEGAEGIETDVHFSKDKQFIIMHDETVDRTT NGTGLIMDKTLGEIKKLDAGIRFSEEFRGTQVPTLQEVVNMLMKINFTGIFNLELKTNKI HYPGLERAVYEYFAALPYPFQLIYSSFNGKSLEILNKIDPKAYEARLFKTAAKQAKTLKR SKVVEDFHPDIRWIKQHPFYASARHLRPWVVNSTEDMQYCFERNMAAIITDYPGRAVQLR SEMRGGLI >gi|238617813|gb|GG669608.1| GENE 453 475210 - 475386 231 58 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1163 NR:ns ## KEGG: Lbuc_1163 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 58 1 58 58 100 91.0 2e-20 MKHFTNGLIVGVLGTVAAGLGALLTFKKSVVDPIEDQEQKFENNRKRAMRKSRAAHHG >gi|238617813|gb|GG669608.1| GENE 454 475481 - 475900 387 139 aa, chain - ## HITS:1 COG:lin1388 KEGG:ns NR:ns ## COG: lin1388 COG0607 # Protein_GI_number: 16800456 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Listeria innocua # 25 136 16 124 126 107 49.0 4e-24 MLKLIVGALNANGWMSIILIVILLGWLIYTLVQNYRVKQAAKYLTNKDFQSGMRKAQVVD LREPKTFKDGHILGARNVPYSTMRNFYQQLRPDLPVYLYDQGKTVSKRAALFLRKKGYQN IFILKTGYQNWDGKEKKSH >gi|238617813|gb|GG669608.1| GENE 455 475943 - 476944 859 333 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 10 326 2 319 319 335 54 2e-90 MKAGGLILASKRLIGIDLGGTTTKFAFIDEDGNILTKWSIPTDISDSGNKIVPNMIKSIA DQMRREDYNTDDFIGIGMGTPGAVNREKGTVVGAFNLGWDQVQQVGPTITEGLGLPIAID NDANSAALGEYWKGAGDKADDVVFVTLGTGVGGGVVTNGKLVHGINNGAGEIGHICVQKN GFLCTCGKRGCLEQYASATGVVKVAKSLAKRFTGKSRIKELIEGQEELTSKMVFFLADNG DILANQIVNEVCSYLGLALSHVGNTLNPENIIIGGGVSNAGNTLLQPTTRYFQENAFKSV RDSTKLKLAQLGNDAGVIGAASLALKFKNDKAM >gi|238617813|gb|GG669608.1| GENE 456 476913 - 477137 184 74 aa, chain - ## HITS:1 COG:SPy1530 KEGG:ns NR:ns ## COG: SPy1530 COG4483 # Protein_GI_number: 15675429 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 66 1 66 67 69 57.0 1e-12 MKTLYDVQQLLKKFNIYVYVGKRLWDIEVMALELDHLHKAHLISHDDFIHAKLILTHEHR IEEKHESRGTYLGK >gi|238617813|gb|GG669608.1| GENE 457 477184 - 477846 609 220 aa, chain - ## HITS:1 COG:lin1374_1 KEGG:ns NR:ns ## COG: lin1374_1 COG0705 # Protein_GI_number: 16800442 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Listeria innocua # 7 172 181 345 345 150 40.0 1e-36 MGRLRDKPYMTYALLGIMVLVYLLMTISGGTENVANLVRFGAKYNPLIRAGEYWRLLTPI FIHIGFTHILMNGITLYFIGQYVETLFGHWRFLLIFLASGIAGNLASFAFSPSLSAGAST SIFGLFGAFMMLGESFSRNQAIVSMARTFLLFIVLNIATDIFVSGIDIAGHLGGLVGGFL IAYVSGVTFGKVSLVKRIVAGITLVVIIIAMFIMGMRSSF >gi|238617813|gb|GG669608.1| GENE 458 477869 - 478417 326 182 aa, chain - ## HITS:1 COG:lin1373 KEGG:ns NR:ns ## COG: lin1373 COG0212 # Protein_GI_number: 16800441 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Listeria innocua # 9 167 7 173 179 119 39.0 4e-27 MQNKAKMNLRKQQLQKINHFLQCKNADTLLKQLYQQLFTDPDYLKAETIGITLSMDGEVP TQKVIDFALSNGKKVVVPRTLPHRQMEFVLFDDSTQLAITKFGTREPIGGSVVSKSAIDI LVVPGLAFSRNHYRVGFGGGYYDRFLTDFHGLSISIATPPQFFDEPIWPIESFDIKIDKI IH >gi|238617813|gb|GG669608.1| GENE 459 478619 - 478768 268 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227510500|ref|ZP_03940549.1| 50S ribosomal protein L33 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 49 1 49 49 107 100 8e-22 MRVHITLECTECHERTYLSSKNRRNNPDRLELKKYCPRERKVTLHRETK >gi|238617813|gb|GG669608.1| GENE 460 478885 - 480942 1819 685 aa, chain - ## HITS:1 COG:lin1477 KEGG:ns NR:ns ## COG: lin1477 COG0768 # Protein_GI_number: 16800545 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 6 676 5 686 721 413 39.0 1e-115 MTLKIFKKRNKKSKKTKAASLPFRINIIFIVVGILFIALLTQLAYLQVMYGSKFKAEVNR SDTSVVSGNVQRGMIYDSTGKVLVGNSAHQAIIYTKGVNEMSSDLYQTATKLSQYVKVSK SSLTKRQLADYYLANTNRLTAVEKRLGGLDSYSEDAKYNKALEYVEKIPNSRFSQATKNA AEIFAKMSGAYQLSTVNIKDDNVSETEIAQVGEHLSEMPGVNVGTSWSRNYPNGKAIQGL AGTVSNEKTGLPSDRVNELLAEGYSRNDSVGQSYLERQYEPVLRGTKSQTQVVLNSDNEI KKEIKKYGGQKGDNLQLTINAKFQKTLQSLVRSAEQGAGGNSTGTYAVVMDPNNGAVIGM AGVDRNPKTSKITDNVLGNINSSIVMGSVVKGAMVSGALMDGVITPTNSVLTDQPITTGG VKKSSWFNHNGGSNISVDASGALEVSSNSYMMQLAMKEARFKYVEGGALTMNPSIFSKLR GYFNEFGLGVDTGIDIPGESTGLKGASGRQHIGSALDEAFGNYDAYTTMQVAQYMSTIAN GGYRIAPHVVQSIRGTNKNGSLGAVKATVMPKVLNHIDMTSAQRAVVKRGLYDVVHGTNT YKTGGELDTIKPEISAKTGTAQTFYNGNETVTLSLASYAPSTHPQVVVALAMPNLGVNAE SNNMQLAKRIYAAYWKEVQSTSTVK >gi|238617813|gb|GG669608.1| GENE 461 481070 - 483700 1441 876 aa, chain + ## HITS:1 COG:L48341 KEGG:ns NR:ns ## COG: L48341 COG4485 # Protein_GI_number: 15672817 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 874 4 875 883 220 25.0 1e-56 MKSKRYPLILCFLIPIIVTVGYFIFRHFAPFGNSSILTVDMGQQYIDFFAHYRDTLLHNP SGILYSFAKGLGGDMFGTWSYYLMSPVNLLILLFPISMLPSVLALMTILKYGLAGLSFGY FLQKKYQATDWPVIGFSVSYALMGWMVANQLNMLWIDAAILLPIIFLGIDNILKHQSTKL YIISFTAMLVINYYMGWMVAIFVSAYMVVFGIARALPTSYSYGKIFYRWIKASLISGILS AWILIPTFFSLLTSKTNYSKNEFRVRFEYNPLDILGKFINGSFDFKQLPNGTANIFVASI IIILFAYYYLSPTIKGRLRIASFALTVFFVLSMCFQPLDLFWHGMQLPVWYPYRFSFIFS FWMILTAFEAFKDILTNGLHWKTFIGSTLIILIGMIYIGTKIKSFEYLKPENYVWGWIYL ILSIGLIVFYGLYRKNILLSIAMAILMTGEMSLNFVNSLNNISYLNNSDYTKFASITRPL VDKIKQSDKGFYRTGETFSRTKNDALTAGFNGGSIFSSTLESATSNFFGNIGQPNGDAYV FYSNGTMFTDSLLSMKYWMNERPVTIKTSQKTMPQFLSTLTSKPDLSKYDLTSQTKLTNT YKNPYALPLGFVSPENSLKTTVVPNNPITYQNQLAQQLDPKIGDLFKSASYTNVSYHNIY PVLDLDNAVLRKKNMMEQSYVTIKVPIEKNTSYYMTMGPNISNTQLSVLVNGNSLVQFRP AKKTVVANIATGGTANDTINVKFYANANDVWLQDVKLYKVNDQKIANFAKDLKKSPYKID RWSNHKFTGTVNVKAKQQALTTTIPYSKGWHVKVDNHSVTPKKWAKMFIYVPVSKGTHHV TFTYWPQGLGIGVTISLIGVCLIVGEYYYNKKKKVI >gi|238617813|gb|GG669608.1| GENE 462 483769 - 484080 475 103 aa, chain - ## HITS:1 COG:lin0943 KEGG:ns NR:ns ## COG: lin0943 COG4841 # Protein_GI_number: 16800012 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 97 1 95 100 72 37.0 2e-13 MKLEITDAASKWFHDEMGLSDGNGVRFYGKVYGKTPVHDGFSLAITRDDNPEEVYTETDK DGIKYFVDAGDEWFFKGYDLGVDFDPKKDPENVTYSYTPNGEL >gi|238617813|gb|GG669608.1| GENE 463 484216 - 484692 543 158 aa, chain - ## HITS:1 COG:lin1531 KEGG:ns NR:ns ## COG: lin1531 COG0782 # Protein_GI_number: 16800599 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Listeria innocua # 1 157 1 157 160 179 65.0 2e-45 MAEQESYPMTAEGRDKLQKELEDLKVNQRPKVVERIKIARSYGDLSENSEYESAKDEQSM LESRITTIEHMIQYAQIIDSHDSDKDEVTVGKAVTFKELPDEEPETYTIVGAAEADPMSG KISNDSPIAKGLLGHRLNEEVVIHIPAGDMKVKILEVK >gi|238617813|gb|GG669608.1| GENE 464 484717 - 485391 666 224 aa, chain - ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 5 212 2 209 211 256 59.0 2e-68 MTEPAKKPVVIGVTGGSGSGKTTVSRKIFDELSNYSIMILQQDSYYKDQDEMTMAQRKRV NYDHPMAFDYDLLVKQLKSLLKYQAIEKPVYDYNQFTRSKKTIHQDPREVIILDGILILD DERLRDLMDIKVFVDTDDDIRLIRRIERDTKERGRSLDSIIHQYLTTVKPMYHQFVEPTK RYADIIVPEGGENQVAIDLLTTKMRSILKSRGSEQIKQNFDSTI >gi|238617813|gb|GG669608.1| GENE 465 485421 - 486539 1007 372 aa, chain - ## HITS:1 COG:L24228 KEGG:ns NR:ns ## COG: L24228 COG1559 # Protein_GI_number: 15672617 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Lactococcus lactis # 39 371 201 546 550 273 40.0 5e-73 MSNNSNERTPKPNRSLGRKIIISVIAILIILAVSISFLGYRYFQEALKPMNPQNTNVTQV HIPLGASNKQIGSILQNKKVVKSGMVFDYYVKSNNMSEFRAGYYQLKPSMSLKTIAKQLQ KGGSDQPIQSTKGKVLVREGANIDQIATQVSLTTDFSKQNFISVMKDQAFMEQLEKAYPK LLGSAMKAKQVRYRLEGYLYPATYEVKKNTSLKSLVNQMVAKTNQVLAPHYQQIKKTKLT VQQFMTLASLIEREGVNQTDRRKMSGVLLNRIDINMPLQSDVAVLYAIHRNNKQLTTKDL QSNSPYNLYKYTGFGPGPFDSPSISSVQALLHPLDRSKNYLYFVANTKTRKVYYSKTYEE HQQQIAKHASNN >gi|238617813|gb|GG669608.1| GENE 466 486584 - 488995 2000 803 aa, chain - ## HITS:1 COG:L0355_2 KEGG:ns NR:ns ## COG: L0355_2 COG0072 # Protein_GI_number: 15673910 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Lactococcus lactis # 149 803 4 652 652 582 48.0 1e-165 MKVSYNWLKKYLNLDIPAKDLAEKIERTAVEVDSVDIAEEGLKKLVIGHVLSMTSHPDSD HLHVCSVDVGEEEPLQIVCGAPNVDAGQKVIVALPGSRIGGNVKIKRSKMRGVESEGMIC ALDEIGFSKDVVPKEWADGIYVFDDSVPVGEPVYHYLGMDDPIIDLDVTPNRGDMLSILG TVHELAAIYDQHPDIKKPVVHEDSALNANDEIKASSDNSLAKTYKLRVIKGVKIAPSPSW LQITLWNAGVRPINNVVDVTNYILMKYGQPLHSFDEDKIDGDIQVRLAQKGEKITTLDEE DHDLSPEDIVIADNDHPIALAGVMGGYNTQIDEQTTNVVLESAIFDSIRIRKTAQRHVLH SEASQRFERGINPDGVEDAINEAVNLIQKLAGGKVAKGIVTASEYHPELPTIFITAARTN HVLGTNLKIEDIKAIFDRLGFISEKQSDGLNVTIPARRWDIHIEADLFEEVARIYGYDNL PATLPTGRQTIGVLTSAQKVQRAARHILEGLGLTQAISYSLTTEEKAQLFMMRESKLTKL LSPMTQDHSTLRMNLLSGLLDDVSYNHAHKVNDVALYETGRVFYKDTDDQVRPDEVEHVA GVVTGNLTDPSWNNHVKSVDFYDLKGIVDQFIENLGINGDIEYTATNKYPEMHPGRTADI SIHGHYVGFIGQVHPKITKQFKIKETYAFELNLQTLIDLPKSDDQYQVISKYPSVERDIS FLVDSDVTNDQIVNLMKKRGGAFLHDIRLFDIYDGANVPDGKKSMAYSLHYVNPRETLKD EVVTTAFEKIKKRLTDELNAEIR >gi|238617813|gb|GG669608.1| GENE 467 488999 - 490048 842 349 aa, chain - ## HITS:1 COG:L0354 KEGG:ns NR:ns ## COG: L0354 COG0016 # Protein_GI_number: 15673911 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Lactococcus lactis # 1 346 1 346 346 459 60.0 1e-129 MSLRDKLTEIKQNGLTDIDSTVDLKKLNEIRVHLLGKKGPITAALRGIKDLPVEERPEVG SYANKIRDAITQAVAEHRQKLEDATLNKQLSAETIDVTLPGKPVAQGQPHVIQQIIDEFV DLFLGMGYQVLQGPEVESDKYNFEMMNLPKNHPARDMQDTFYLSKEFLMRSQTSPMQARA LEKHDFSKGPLKMISPGIVYRRDTDDPTHSHQFHQVEGLVIDRHVTMADLKGTLITMAQK IFGDKFDIRLRPSYFPFTEPSVEVDVTCFNCMGKGCDVCKHTGWIEVLGAGMVHPNVLEM AGVDSKVYGGFAFGVGPDRFAMLKYGVDDIRDFYLDDVRFLDQFDKRGN >gi|238617813|gb|GG669608.1| GENE 468 490391 - 490741 272 116 aa, chain - ## HITS:1 COG:BH0508 KEGG:ns NR:ns ## COG: BH0508 COG1733 # Protein_GI_number: 15613071 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 15 110 6 101 102 102 53.0 1e-22 MKENIALREPINYFLCPKFEKTFSFLGKKWNGLIIDVLLQEGALRFREVARQIPKCSDRV LVERLRELEDDGVVIRKDYPNSSLIEYSLTDQGKELAPIMHAIHSWSEKWYPSTES >gi|238617813|gb|GG669608.1| GENE 469 490791 - 491288 520 165 aa, chain - ## HITS:1 COG:SPy0357 KEGG:ns NR:ns ## COG: SPy0357 COG1418 # Protein_GI_number: 15674508 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Streptococcus pyogenes M1 GAS # 6 157 3 153 166 167 56.0 1e-41 MRKDEWKNDSEYVQIVGDLIKNPTVQKLANYKQHHHSTRLEHSLAVSFDSYRIAKKRDLD YRAVARAGLLHDLFFYDWRTTKFDLGSHAFVHPRVALRNAEKITTLSPVEKDIILKHMWG LTLARPKYEESVIVSLVDDYEAVREFVNPFRTKVKNQIDRIATTK >gi|238617813|gb|GG669608.1| GENE 470 491360 - 492127 192 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 112 255 101 244 255 78 33 5e-13 MQSITSNQNNRVKEWRKMQSKKGRLSSGQYIIEGWHIVDEAIKHDQQIDAVIVTDANFLD QLEVDPAVTDTYLITPEVAKHISATETPQGVFAVLTTENYHESIPEKLGGSWLMLDNIQD PGNIGTMVRTADAAGMNGVIFGKGTADIYNPKVVRSMQGSQFHVRLYSGDLAVWMAAFNK HNVPVYGTELNDQAISYDDVEPTKQFALVMGNEGNGVSADLLDKTDQNLYIPMNGEAESL NVAVATGILIFHFVK >gi|238617813|gb|GG669608.1| GENE 471 492184 - 492468 236 94 aa, chain + ## HITS:1 COG:AF0818 KEGG:ns NR:ns ## COG: AF0818 COG1254 # Protein_GI_number: 11498424 # Func_class: C Energy production and conversion # Function: Acylphosphatases # Organism: Archaeoglobus fulgidus # 9 94 5 89 89 69 43.0 1e-12 MDKKIKTTELTIFGIVQGVGFRWATIQVAKEMGISGWVQNKPDGSVKIIAQGKPIPLAQF IMKIKNSPTPYAHIRSVSTKYITNPTLKGFNVKY >gi|238617813|gb|GG669608.1| GENE 472 492567 - 493598 785 343 aa, chain + ## HITS:1 COG:SPy0351 KEGG:ns NR:ns ## COG: SPy0351 COG0706 # Protein_GI_number: 15674505 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Streptococcus pyogenes M1 GAS # 4 302 5 305 307 176 34.0 9e-44 MKKLKRITTFGMLSGMALLLSGCVQTTKSGKPYGLVYDYLARPAQSIMEAIAQIVGSYGW AIVVLTVIVRMFLLPIMVRQMKSSTIQQERMQMIRPQMRKLQQRQKAAKTTEEQTAASQA MMALYRQNNISMTGGIGCLPLIIQMPIFTALYAAIRYSPELSHTVFMGIRLGQSSWLLAV LSFLSYLLQGYLMMLGTPKAQKKQMGAMMLMSPIMILLFTISAPAGLGIYFFIGGLFACL QTIIMNLYRPGIRKKIAKEMEGKKPVTVEDLMPKAPINQSNGTDTKENIHNRNRQRNAGK QQTGETQQISKPVEDVNPEKTQAKNQPHKNDRRRNAGKQQRHR >gi|238617813|gb|GG669608.1| GENE 473 493654 - 495234 1065 526 aa, chain - ## HITS:1 COG:lin1415 KEGG:ns NR:ns ## COG: lin1415 COG0642 # Protein_GI_number: 16800483 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 14 489 12 479 483 308 38.0 2e-83 MSQANNKSGKRKISLKWKWAFFTSIGVLAIVVAFSVLIFNRFTNVLLEQERMHIDNTLST VSSRLTNYSSPLGKGDVERYLRPQLNSGDSQSDDRNIYSDSLVVNFSRDSILVNVYSING KRLFESKKNDSKLASSSKRKIITSRQNGKNILIGVEPLLSKKNGSLIGYAQVIDELSSYR ATARKLAAILAILVLISVLISMILAYVLVAELLRPINQIQETINKVKTDPDSDARVPDLK THDELSDLADLLNSMLDQTRRYIDQQQQFVEDVSHELRTPVAVIQGHIDMLLRWGKDDPE VLEESLKASLQETKRMKSLVSEMLDLSRAEQIELNYGEEITNITEVFEQVYNDFKMIHPD FTFTFDDDTDDHVYVQIYRNHLEQVLVILLDNAIKYSAKRKEVHMSLSTSMSMVNIAIQD FGEGISQEDINKVFNRFYRVDKARSRDKGGNGLGLSIAHRLIEAYHGNISIESSLGYGSI FQINLPILKNMPQEDDDNGSGEGDTPLNLNSSDSKEPNQSNQKNDH >gi|238617813|gb|GG669608.1| GENE 474 495231 - 495917 606 228 aa, chain - ## HITS:1 COG:lin1414 KEGG:ns NR:ns ## COG: lin1414 COG0745 # Protein_GI_number: 16800482 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 228 1 226 226 283 68.0 1e-76 MSRILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNG MEVARRLREKKNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQ IENDQQKSSKKSVTFKDLTIEKESRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVL LTKVWGYDSEVETNVVDVYIRYLRNKIDRPGENSYIQTVRGTGYVMRS >gi|238617813|gb|GG669608.1| GENE 475 496167 - 497183 919 338 aa, chain + ## HITS:1 COG:L55758 KEGG:ns NR:ns ## COG: L55758 COG1064 # Protein_GI_number: 15673789 # Func_class: R General function prediction only # Function: Zn-dependent alcohol dehydrogenases # Organism: Lactococcus lactis # 1 338 1 340 340 420 61.0 1e-117 MKAAVVRDPVDGYVDIKDVQLRPIHQGEALVKVEYCGLCHTDLHVAAGDFGKVPGRIIGH EGVGKVIQVADDVDNLKIGDRVSIAWFYRGCGHCEYCTTGRETLCRNVQNSGFSVDGAMA EQVIVPADYAVKVPEGLDPVEATSLTCAGVTMYKALKVGETRPGQWVEVVGAGGLGNLAV QFAHNVFGANVIAVDGNEDKLNAAKENGADITINRHDPDVAEQIQKKVGGVHNAQITAVT TEAFTTSVNALRPDGRLVAVALPKGDMALNIDKTVLDGIQVAGSLVGTRQDLAETFQFGS EGKVKPIVKTRRLDEVNDIIDEMKQNKIVGRMVVDFTK >gi|238617813|gb|GG669608.1| GENE 476 497451 - 497624 297 57 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227510517|ref|ZP_03940566.1| ribosomal protein L32 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 57 1 57 57 119 100 3e-25 MATPARRTSKARKRMRRGHIKLQTPNLSLDPRTGEYTLPHHVSLSGMYKGRKVLKNK >gi|238617813|gb|GG669608.1| GENE 477 497676 - 498209 298 177 aa, chain - ## HITS:1 COG:SPy0334 KEGG:ns NR:ns ## COG: SPy0334 COG1399 # Protein_GI_number: 15674493 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Streptococcus pyogenes M1 GAS # 8 173 13 178 178 84 30.0 7e-17 MQKYSDTDPFTFNETLDIKSDLLSRYADEVIDASTFKIDGAAFSDRGDVIIDTHIVGKLV VPSSRSLTPVDLPLDFTVEEYYVPSKAAESRYGKDDVVFILGEEDEVDSRSAVVDNVILH IPMHILSPEEEAGKTMPSGHDWNVLSVDDYEDQKAELKTVDPRLAKLKNFFKDKDSN >gi|238617813|gb|GG669608.1| GENE 478 498314 - 499384 613 356 aa, chain - ## HITS:1 COG:lin2155 KEGG:ns NR:ns ## COG: lin2155 COG1323 # Protein_GI_number: 16801221 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Listeria innocua # 1 354 21 389 391 202 32.0 6e-52 MTQAKEKTGADVTVAVMSGNWLQRGEPAMYDKWTRALAALKTGVDVVIELPFYAAVQPSH IFSAGAVRLVAAMKCDWLAFGAETPEIDYQKLIDNQPKKDDSFKQFNRPYASIFQEYLYS RTGIRIDKPNDILAFGYANANMLIGSPLHLVPIKRVGSAHNDHQLSSGLISSASAIRDQL KNGHFDIVRKFVPESSWRTFSTAKVIDWDQFWPLLRFELIEAPIDTLHSIYQMTEGIEYR LKQAAIESETFSQFLQFVKTKRYTYTRIQRLCCYVLLHVTSSEMLINPQYIRLLGCTRQG RRYLNQIKNDLELPMISKVNQEVVKKFVHLDFKAGMLIEMVNGAHQDFYKHPIILH >gi|238617813|gb|GG669608.1| GENE 479 499449 - 500189 420 246 aa, chain - ## HITS:1 COG:L28696 KEGG:ns NR:ns ## COG: L28696 COG0500 # Protein_GI_number: 15672211 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 1 244 2 244 244 213 44.0 2e-55 MIYHEFAKFYDDLFDETLYDKWLEYTLRRTNRSDKILDLACGTGRLAVRLSRAGYNVDGA DLSEDMLTMADQRAREADQQINFFQLDMRNLSELPSYDSITCFDDSLCYLSSESDLRQTF SQVSTHLKPGGSFLFDVITPYQTDEVYPGYMYNYQDEDRAFMWSSYASESVSHAVEHELT FFLYDGDKNAYDAYNELHKERTYPVDRYSQMLTGAGFSEIQITTNFGEDSFKNDVKRWLF ECKKVN >gi|238617813|gb|GG669608.1| GENE 480 500186 - 500542 477 118 aa, chain - ## HITS:1 COG:lin1521 KEGG:ns NR:ns ## COG: lin1521 COG0799 # Protein_GI_number: 16800589 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Listeria innocua # 1 114 1 114 118 112 50.0 2e-25 MDSKEISQIVVRAADSKRAHDIVVLDMEKVSLMADYFVIADANSNRQVKAIAEEVVDQVE ANDIHVYSVSGKETSNWILIDLGDVIVHVFQKDTRDFYNLEKLWTDAPIVNIDSWVEV >gi|238617813|gb|GG669608.1| GENE 481 500553 - 501164 545 203 aa, chain - ## HITS:1 COG:SP1746 KEGG:ns NR:ns ## COG: SP1746 COG1713 # Protein_GI_number: 15901578 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Streptococcus pneumoniae TIGR4 # 6 197 1 191 197 183 46.0 2e-46 MKNSQMTYHEQIVPYSRKKLVKKLKDALTDSRYQHVLRVEQTAMDLAEKNNIDIERASIA GLVHDYAKQRPDKDFIKAIHEYQLNPILLNYGNSIWHGVVGWLFVKNELQINDIEVLNAV RYHTVGHQYMTPLEQIVYMADYIEPGRDFPGVDDARKITFSNLQKGVAYQTKQTLSYLVA HNKPVFPQTIITYNSWVPKFDLK >gi|238617813|gb|GG669608.1| GENE 482 501154 - 501786 524 210 aa, chain - ## HITS:1 COG:SPy0308 KEGG:ns NR:ns ## COG: SPy0308 COG1057 # Protein_GI_number: 15674475 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Streptococcus pyogenes M1 GAS # 22 209 23 210 210 230 57.0 1e-60 MVNVSQTVQTLPKTKVVTQGKRKRVGILGGTFNPIHNGHLIIAEQVRDQLGLDRVYFMPD ANPPHVDPKFAIDAKDRVAMVNLAITGNPKFAIEMTEIFRGGVSYSYETMLDLTRRHPEN QYYFIIGGDMVNYLPKWHRIDDLVKLVSFVGVKRDGYTPASKYPIIWVDVPYIDISSTLI RSKIRQHQSIRYLAPDAVLKYIKENQLYEK >gi|238617813|gb|GG669608.1| GENE 483 501808 - 502119 243 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|170016752|ref|YP_001727671.1| RNA-binding protein [Leuconostoc citreum KM20] # 1 85 2 86 104 98 55 6e-19 MELTGKQKRYLRASANRMRPIFEIGKNGLSKIWLEEVVKALDTRELIKINILQNAAVTTD DVQGFIEGNSDIIVVQKLGKTLVLFKQSANKDNRDLSSNVFSI >gi|238617813|gb|GG669608.1| GENE 484 502138 - 503274 819 378 aa, chain - ## HITS:1 COG:SP1749 KEGG:ns NR:ns ## COG: SP1749 COG1161 # Protein_GI_number: 15901581 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 11 378 2 368 368 472 60.0 1e-133 MSENEVLVDGEVVHCIGCGAKVQTTNKDALGYTPKSALEKGLQNGEVYCQRCFRLRHYNE IAPVSLSDDDFLKLLTSISGTDSLIVYVVDIFDVNGSLIPGLHRFVGDNPVLLVGNKLDV LPASIKERKVRDWLRQRANAAGIRPIDVELISAKTNFDVDHLLDQIEKYRDGKDVYVVGV TNVGKSTLINAVIRQSTGIKELITTSRFPGTTLDRIDIPLNDGHSIVDTPGIIQPEQMAH HLVGKELNLVTPQKTIKPKIYQLNPEQTLFFGGVARFDYDSGDGKHGFTVYAENNLYIHR TKLENAEAFYEKHLGDLLSPPSENRKDDFPPLERHEFKTSQKSDVVIEGLGWVTVPSDVV VSGWAPKGVSVLIRPAMI >gi|238617813|gb|GG669608.1| GENE 485 503284 - 503799 281 171 aa, chain - ## HITS:1 COG:SPy0305 KEGG:ns NR:ns ## COG: SPy0305 COG2179 # Protein_GI_number: 15674472 # Func_class: R General function prediction only # Function: Predicted hydrolase of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 2 171 22 191 194 163 42.0 1e-40 MLSKFRPTWMIESIYNVSPQFLLENNINCVLTDLDNTLVPWNSKKGSEELRSWLHEVKKY GIKVIVVSNNSHKRIQKAVQDYELPFVPRAMKPLTIGIRHALKSFNLNKKNTVMIGDQLL TDVVAANSCHVRSILVKPLVDNDAWNTTLNRCLEKIIWNKLIKKYPNLHWE >gi|238617813|gb|GG669608.1| GENE 486 503884 - 504240 592 118 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227510527|ref|ZP_03940576.1| ribosomal protein L20 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 118 1 118 118 232 100 2e-59 MPRVKGGTVTHARRKRVLKLAKGYRGGKSRLFKTAKDQVMKSQVYAFRDRRANKGNFRKI WIARINAAARLNDLSYSKLMHGLKLANIDMNRKMLAELAVNDADAFKALTDEAKKALK >gi|238617813|gb|GG669608.1| GENE 487 504304 - 504498 337 64 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227510528|ref|ZP_03940577.1| ribosomal protein L35 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 64 1 64 64 134 100 8e-30 MPKQKTNRAAAKRFKKTANGGIKSAHAYTSHRFHGKTKKQRRQLRGTHMMDHTNLKTYKK LLAK >gi|238617813|gb|GG669608.1| GENE 488 504529 - 505038 395 169 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 2 165 1 165 166 156 45 1e-36 MMVNEGIRAREVRLIGPNGDQLGVKSKSEALKLAEDAELDLVLVAPKAKPPVAKILDYGK YRFELQKKERESRKKQKVISVKEVRLSPTIDVNDFNTKLKNAKKFLAKGEKVRVSIRFKG RAITHKEIGRNVLERMAKETDDVATVTQRPKMDGRSMFLMLSPKEPDNK >gi|238617813|gb|GG669608.1| GENE 489 505269 - 507212 1747 647 aa, chain - ## HITS:1 COG:SPy0517 KEGG:ns NR:ns ## COG: SPy0517 COG0441 # Protein_GI_number: 15674621 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 4 647 2 644 647 790 59.0 0 MSKLSFEFPDGSVKEFDDGVTAEDIAKSISISLGKKAVAGKVDGQFVNDNEPLHKGGKVE IVTGDSQDGLNVLRETAAQVLKAAIASNFKDIRFGESAADDDGFFVDTDKPETQISVDQL DSLTKSMQQIISKDLPIKVTFLSKDDALKQVVGDPYQTELINEIADGNQVKFFEIGDFKS VAEGAVLPSTGKVKIFKLLSVAGAYWQGKSSNPMLQRIYATAFNKQSELDEDLKKRQEAH ERDHRVIGNQLDLFFVDPKVGAGLPYWMPNGATIRRTIERYIVDKEVANGYEHVYTPVLA NLDLYKQSGHWEHYREDMFPPMDMGDGEELELRPMNCPSHIQIYNHHIRSYRELPLRIAE LGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQIQEEFQNILKLMVEVYHDFDINDYT FRLSYRDPENTEKYFDDDEMWNRAQSMLKGAMDELGLDYVEAEGEAAFYGPKLDVQTKTA LGNEETLSTIQLDFMLPERFDLHYVGEDGKQHRPVMIHRGLVSTMERFVAYLTEIYKGAF PTWLAPHQVKIIPVSQDKHGDYAKQINDQLRRLKIRSSVDTRAEKMGYLIRDAQTHKIPY TLVVGDEEVNGKSVSVRRYGEKETQAESLDAFVDEIQKDIASYSRND >gi|238617813|gb|GG669608.1| GENE 490 507545 - 508483 933 312 aa, chain - ## HITS:1 COG:lin1595 KEGG:ns NR:ns ## COG: lin1595 COG1484 # Protein_GI_number: 16800663 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Listeria innocua # 14 310 5 306 307 233 41.0 5e-61 MEPVSKYIQQFLKERTINGKGARKSFQVAVRQIETDPEIQQFLKENKAKLAEDAAQRSIA KLREYLMVRDTLKKKQKSFVPGYVPKLVVSDHLIEVSYAPSAETLDKQKAERLARRVTTI SMPKDIRNASLDNFDQTDSRYRAFAKAVHFTSKYMAKDQFEPGYYIYGPFGVGKTYLLGA LANDLADSGVLTTLVHFPSFESEMKASISDNSYLDKIDAVKKSQILMLDDVGAGSLSSWV RDEVLGVILEYRMQQQLPMFFSSNLSMEQLEEEWLTFNNHGDAEPLKAQRLMQRIRFLSR EVEMPGQNRRPM >gi|238617813|gb|GG669608.1| GENE 491 508483 - 509928 973 481 aa, chain - ## HITS:1 COG:BH3145 KEGG:ns NR:ns ## COG: BH3145 COG3611 # Protein_GI_number: 15615707 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Bacillus halodurans # 7 480 7 484 485 110 23.0 4e-24 MLNSENKLTPDSKYLVLNASANKSVDQSVLTNLYLPIIGRGAVQLYNLLWSLSVSDHNRL ILHKHFELQSILDIGIDKLLRYRRKLEAVNLLVTSVSLTSPDSYVYSMREPCTATEFLKT DILSILLLGRVGEDTYNRIVARLFIPMPDVGQVKNVSASLLDVFQIPENSVKNIPGPVNI AKQTISGNSAELNHRYLEPSKEEFDFNLLLDILENSYVDAASVKAAQPLILSEYSLYGID EIKMGELIKKATNLNTNKLNQKSLKFIIARDFTQPQVRVPDSINKKPEDDADGQQLVQQF DQPTQQVIQISKENAPISFLKQIKDQKGGMVTAGEQRMIRELVSKGLLPREVINVLIYYV LIGIGNSTLNQNLVNTIADNWAQNHVTNAEKAILQVQKRTEEKQEKETQRSQRRYSSGGR RQITETLPDWAKKEKQQTKEASKKAKQSAEQQKTGPDEAERKRVNKELAELRKRKEKRGE N >gi|238617813|gb|GG669608.1| GENE 492 509928 - 510422 474 164 aa, chain - ## HITS:1 COG:lin1597 KEGG:ns NR:ns ## COG: lin1597 COG1327 # Protein_GI_number: 16800665 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Listeria innocua # 1 154 1 154 154 182 61.0 3e-46 MQCPHCGYNGSKVVDSRPTDDGRVIRRRRECEHCGFRFTTFERVEATPLLVIKKNGNREE FNREKILKGVVRSAEKRPISMDAITDLVDRVENKVRSSGENEVTSRQIGEYVMEELVNLD EIAYIRFASVYRQFKDMSVFYKELKEVMEKDKKKNAAKQHPEEK >gi|238617813|gb|GG669608.1| GENE 493 510434 - 511027 287 197 aa, chain - ## HITS:1 COG:lin1598 KEGG:ns NR:ns ## COG: lin1598 COG0237 # Protein_GI_number: 16800666 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Listeria innocua # 1 193 1 195 200 153 41.0 2e-37 MNKVIGLTGGIATGKSAVSTFLGRKGIPIIDADIVAHQVQEPGENGLKAITAEFGQEVLA SSGRLDRTRLGEIVFQHPQKLKRLVQVMDPFIREKIIHEIDRYRDKQLTVLDAPTLFENG YTYLTDSIVVVYCDPVTQMKRLRRRDDLTISQASARIKSQWSLQTKCDLADTIIYNSGSL ENTNMQVEDWLQQEKKY >gi|238617813|gb|GG669608.1| GENE 494 511020 - 511862 606 280 aa, chain - ## HITS:1 COG:SP0970 KEGG:ns NR:ns ## COG: SP0970 COG0266 # Protein_GI_number: 15900847 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Streptococcus pneumoniae TIGR4 # 1 272 1 271 274 265 47.0 7e-71 MPELPEVETVRRGLTELVAGSQIRTVDVLYPKMINLPPEDFTNALKNQIIEKIDRRGKYL FIRINNGLTIVSHLRMEGKYDVEPEGTPLSKHTHIVFHLTDGRQLRYNDTRKFGRMNLVD TGHELTVAGLKTIGPEPTERDLTLDYMRKIFGKSKKLVKPFLLDQSNIAGLGNIYADEVL WLSKINPKQPVNTLSVAELKLLRKSIIDEIKKAIDGHGTTVHSYSNAYGEAGNFQNHLNV YGRQGEPCLRCGTPIEKIKLAQRGTHFCPNCQVIHGDRHE >gi|238617813|gb|GG669608.1| GENE 495 511957 - 514608 1993 883 aa, chain - ## HITS:1 COG:SPy0185_2 KEGG:ns NR:ns ## COG: SPy0185_2 COG0749 # Protein_GI_number: 15674390 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Streptococcus pyogenes M1 GAS # 325 883 1 557 557 579 54.0 1e-165 MTKKLLLIDGNSIAFKAFYALYNSLERFTNSSGLHTSAIYGFNRMLDKVLQEEKPTDILV AFDAGKTTFRTKMFSDYKGNRAKTPTELSEQFPFIRELVKARGISSYELPDYEADDIIGT LAKEAEDKGDYQVVILTGDRDLTQLTSDKTTVQISKKGTTDLEKYTPQHVEEKLGVKPSQ IIDIKGLKGDNSDNYPGVTKVGDKTAMKLVQQFGSIENIYSNIDHVSGKMLKEHLLNDKD KAERGKVLATIKRDAPIKVSLDDLKYEGDNLDRLTDFYERMGFKSFLSNLGVDATDKNEI ENIQYTKLTSDNLDQLNQFKDEVSFYLEMDDENYHTANLMGFVLGHEAQWFASNDISLLN TKQVKAILESSTVQKNVFDAKRTYVGLYRSSITLQNVDFDMLLVSYLLNTTNNSNDVGTV AKLHGFANIKTDEEVYGKGAKKKIDPEAPEFFDHIVHKAKAIDQLHNDMFKALDEHNQTT LYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTIFQEAGEEFNIGSPK QLGHILFEKMRLPILKKTKTGYSTSVDVLEKLAPDAPIVQNVLNYRQISKLQSTYIDGLL KVIHKNDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRSEEGRLIRQAFVPSHEDWQIWSS DYSQIELRVLASITGDKNMQEAFREGEDIHATTARRIFGLASNDDVTPELRRQAKAVNFG IVYGISDYGLANNTGISRKQAHQFIQRYFEEYPGVKKYTEDIVEFAKNHGYVETIAHRRR YLPDIHSRNFNLRSFAERTAMNTPIQGSAADIIKIAMINMDEALKPLKTRMLLQVHDELI FEVPNDEMETVEKLIPKVMDSAIKLNIPLKVESHWGKTWYEAK >gi|238617813|gb|GG669608.1| GENE 496 514745 - 515452 715 235 aa, chain - ## HITS:1 COG:L177346 KEGG:ns NR:ns ## COG: L177346 COG0670 # Protein_GI_number: 15673718 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Lactococcus lactis # 19 232 17 232 237 122 40.0 8e-28 MDNFSNERNERRVVNNAAGLNAFLTKMYGWMSLAVLVSAATAFLTVTAISPAVLTGGGMW IAIIAWFILPFVVSFQALKRPSLAFAALMGYAVLSGFVFSTLAYRYTGASIAAAFVSASA IFITMTVFGLVTRKNLDKIGRQAIAALIALVIAMIINIFLRSTLITFVFSIIAVVIFTAL TAYDTQKMKQMYNQAGSTGQVSVSGLAVFGALQLYLDFVNLFLQLLQIFGMGDER >gi|238617813|gb|GG669608.1| GENE 497 515608 - 516939 1199 443 aa, chain - ## HITS:1 COG:SP1521 KEGG:ns NR:ns ## COG: SP1521 COG0773 # Protein_GI_number: 15901367 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Streptococcus pneumoniae TIGR4 # 7 441 5 442 444 513 57.0 1e-145 MNSDTVYHFVGIKGTGMSAMALILHDRGEKVQGSDIEQYTFTQRGLEQAGIKILPFDANN IHEGLTVIAGNSFTDDHPEIKKAREMGLTVYRYHEFLGKIIKGKTSIGVSGAHGKTSTTG LLSHVLSGIAPTDYLIGDGSGRGVPNARFFVYEADEYRRHFLATEPDYAIMTNIDFDHPD YYKNIDDVQDAFQTFANQTKKGIFAWGDDKRLRQLKAKVPIYYYGLNDTDDFQAFDVKRT TKGSSFHVRFKGKDLGEFTVPLFGEHNIFNSLAVIAVAYSEDVDLEEIRRELKTFDGVKR RFSERKISGMTIIDDYAHHPTEIKATIDAARQEYPSKKIAVVFQPHTFSRTIALMDDFAK SLNLADEVFLTQIYSSPRESSGKVSSEDLSKKITKGGRILSADNMSPLLDYDNDVIIFMG AGDIQKYEKTYEDLLSHLSKNNN >gi|238617813|gb|GG669608.1| GENE 498 516972 - 519287 1484 771 aa, chain - ## HITS:1 COG:lin1647 KEGG:ns NR:ns ## COG: lin1647 COG1674 # Protein_GI_number: 16800715 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Listeria innocua # 268 759 284 774 784 518 57.0 1e-146 MKYYDGPAFFRRRDLIKSRTPKKGKNKYQSAPDYSRKPTRDLKKEDTHFTDNRVSDDKTP AFLKEIRNFVPNQRDVNAKRRKQKKQIETNYFVSQKNRRSTYYSKLMDQLRTPDDDLIVL EDPLNSVTQSEKGTLKKADDHILEHHNITPHTEQLEAPLSDSDANHNTDTDRVNQTDEGD LKENVGNHEKDDLENELNHHVIDSSKATNSGPEVSHPIKHGLGQSLVSIVDSERAAKPDL SLFHEQTKDGLSDTKKISVKDDQKRQPVVKESAVETSGLPTETATIQSQSSTSADGYHFP SLGLLKKPQPTDENAMDDWIENQIETLDKTFHAFKVNAQVVDWTDGPTVTQFQVKLALGV KVSRITNLTDDLKLALAAKDIRIEAPIPGKSTVGIEIPNPNPRPVVLSEIISTSNFTNSR SPLTTAMGVDLSGTSRIADVRKMPHGLIAGATGSGKSVFINSLLVSLLYKATPAELKLLL IDPKAVELAPYDGIPHLLSPVISDPKSAAAALHWVTKEMDQRYEKLSAAGVRNIEQFNKK ATDAEEYGLKMPYILVIIDELADLMMAASSEVEDYIVRITQKARAAGIHLIVATQRPSVD IVTGTIKNNIPSRIAFMVSSQVDSRTILDTAGAERLLGRGDMLYLGNGASQPIRLQGAFV NNQELENVVDFVRQQGHPHYLFTPDSLKAAVDNNESQDDLMPQIMKFIAQEDTISTSKLQ RVFSIGYNRAANIIDSLQDRNLISEQRGSKPRTVYYHPDDETSDESKDEKE >gi|238617813|gb|GG669608.1| GENE 499 519314 - 519955 536 213 aa, chain - ## HITS:1 COG:SP1910 KEGG:ns NR:ns ## COG: SP1910 COG0073 # Protein_GI_number: 15901735 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Streptococcus pneumoniae TIGR4 # 2 207 1 204 208 169 45.0 5e-42 MLIASYNPKNTGDTMVVIINQDVDNQETVVHDNVARIYDSKTDQTLGYNFLKASQILPEV IDQNGQIDLTEGQVQRLNQFLTAHGFPGDLKADEEARFVVGYVKTMTDHPRSDHLKITTT EVDNGQEVQIVSGSPNMQVGIKVVVAKIGAMMPNGLIIWPGELRGVESDGMICSGRELHI PHAPQVPGALILPDDYQAVGEPFDFKKAQHLFS >gi|238617813|gb|GG669608.1| GENE 500 519980 - 520303 319 107 aa, chain - ## HITS:1 COG:lin1650 KEGG:ns NR:ns ## COG: lin1650 COG0526 # Protein_GI_number: 16800718 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 18 105 16 103 103 104 51.0 3e-23 MKELPKTDLATLESQIPEGKYMLFFTAGWCPDCRFIKPAMPEIEQKYQDYTFLKVDRDEN IDLAGEMDVMGIPSFVAYDNGQEIGRFSNPDRKTKQEVEKFIDSLNK >gi|238617813|gb|GG669608.1| GENE 501 520456 - 520785 290 109 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227510543|ref|ZP_03940592.1| ## NR: gi|227510543|ref|ZP_03940592.1| hypothetical protein HMPREF0496_2706 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_2706 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 109 1 109 109 192 100.0 6e-48 METKSFYQSVMFASIVTSVYVIFNLNKDYQKSRIRESLLNKMIKQHRDLTIAGKYLGHWS VSFEKTKSTSPVFHFGYNYQTNDGNVEVHAFWVNYLTNKTLKEEVYELK >gi|238617813|gb|GG669608.1| GENE 502 520770 - 521489 349 239 aa, chain - ## HITS:1 COG:L156302 KEGG:ns NR:ns ## COG: L156302 COG0220 # Protein_GI_number: 15672731 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Lactococcus lactis # 27 237 1 213 217 218 51.0 1e-56 MYQEESKKVNLVDNDKFDKLNEEVKSLRVRNKPWADGYIKDHADYIVTEPKNWLGKWQER FESKQPLNVEIGTGKGQFIIENARAHPEVNYIGIELQKSVIATALRKFMEDPLPNLQFVL TDGADLDELFLVGEIQKIFLNFSDPWPKKRHAKRRLTSPGFLKTYQKVLASNGDIEFKTD NRGLFEYTLVTMNNFPMIFDDVFLDLHQSPENETNIETEYEEKFSPNGPIYKLVAHFNS >gi|238617813|gb|GG669608.1| GENE 503 521449 - 522672 731 407 aa, chain - ## HITS:1 COG:lin2317 KEGG:ns NR:ns ## COG: lin2317 COG4473 # Protein_GI_number: 16801381 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Listeria innocua # 2 402 8 404 407 190 33.0 5e-48 MKTLFKKRLGAHLTELTKYLRLVFNDYFVLALVFMIGGLGYYYSNALKQLTTGLWWAPLL IIIVLLISVQTGRMATLIEDPDYVFLLPQEAELIGYLKRAFWYSTILAALMQLLFWIVLM PFIQVTVSASAPQLFSLLGTIIFLKVAWMNADFARKYHLQHKWMGNRWLFRLIIPVVVLA ISIYVNYFIGVVLAAIVMIGGLFTQNAWKKRSVDWQTLIADENSRMHSIYQFFNLFTDVP SLKGSVKRRRYLDWLLHKIKLLPDNTYLYLYAHGIIRDNEMSGLYVRLTVIGTLLLVFIK GEVLPIVLCLLFLYLIGFQMIPFYFHFDDNAFVHIYPVTTEFQLKNFQRVLLMMMGTVAV IFAITVIAVNLTAPVTVIGVLIGEAIEVGLFIFMYVPRRIKKSEFSR >gi|238617813|gb|GG669608.1| GENE 504 522669 - 523406 262 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 3 220 9 227 309 105 30 4e-21 MTLQVSNLVGGYSQVPVLKDVTFDVKDGELVGLIGLNGAGKSTTINHIIGLLTPFKGSVK INGVAINDDVKKYKQQIAYIPEQPIVYKELTLKEHLEMTMLAYNLDQNEAWKRADKLLKT FRLENKLNWFPDNFSKGMRQKVMIVCAFLTNAKLFIIDEPFLGLDPLAVNDLLNLISERK KQGASILMSTHVLDTAQRYCDRFVLLHDGKVRTEGTLAQLQALFPEAGNSLNDIYLTLAR EGEAS >gi|238617813|gb|GG669608.1| GENE 505 523523 - 523987 387 154 aa, chain + ## HITS:1 COG:lin2319 KEGG:ns NR:ns ## COG: lin2319 COG0537 # Protein_GI_number: 16801383 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Listeria innocua # 13 152 1 139 140 171 57.0 6e-43 MIVSIDRKKVKLLKDCIFCKIVRNEIPSYTIYEDDVVKAFLDISQGTPGHTLVIPKKHIA NIFEYDPELAAAVFSRIPKIARAVKDSNPDIKGMNILNNNGQVAYQSVFHSHFHLVPRYT NHDDFSMTFKDNSNKYTPDDLKKIQDSIVAHIGD >gi|238617813|gb|GG669608.1| GENE 506 523990 - 524301 344 103 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1228 NR:ns ## KEGG: Lbuc_1228 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 100 1 100 101 100 50.0 3e-20 MKTGLKMAGAAAFLFGVYLYTNKETPEAFAKRVRKSFRVKRQAYSDWQAAYEDFKQALNK FKDQIPELEKVLIALQRDIDEAQFQIQPRIDEINKYSSKINKP >gi|238617813|gb|GG669608.1| GENE 507 524429 - 525310 860 293 aa, chain + ## HITS:1 COG:lin2322 KEGG:ns NR:ns ## COG: lin2322 COG0760 # Protein_GI_number: 16801386 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Listeria innocua # 2 291 3 287 291 160 38.0 3e-39 MKKWLIVLAGVLMSFTLAACGSKSVATTNGGKITESAYYSSLKGTSSGKQVLQQMILNKV LEKQYGKKVKDSAVNKDFNKYKKQYGSSFNAVLQQNGMTASQLKDSIRSNLLLQQAVRDN TKFTDAQLKAQFKSYQPKVTVNQILVSKKSTAETVIKQLKAGKSFSSLAKKYSTDTATKN KGGRISAFDNTNTSLDSNFKKAAFKLKNGDYTKTPVKTQYGYQVIQMVNHPAKGTYKDHE SELKTQLVDKRLADSDTLHSVVSKVLKKGKVTIQDKDLQNVLSDYLSSSSKKK >gi|238617813|gb|GG669608.1| GENE 508 525374 - 526363 976 329 aa, chain - ## HITS:1 COG:SP1980 KEGG:ns NR:ns ## COG: SP1980 COG3481 # Protein_GI_number: 15901803 # Func_class: R General function prediction only # Function: Predicted HD-superfamily hydrolase # Organism: Streptococcus pneumoniae TIGR4 # 11 312 4 305 308 331 50.0 9e-91 MAKHLMDFSLEEDFETYVLIKNADKRVAKNGKSFLSITFQDQSGQIAGMYWDASEQDAQQ FVPGRVVYLKGKRENYKDTPQIKIYEMRLTKANEPHDPLMFVKRAPMTSQEMKDYINQTI FEITNATYNRIVRALLNRHAKSFFSYPAAKSNHHDFAGGLAFHTISILRLAHSVVKQYPD IDAPLLYAGAVLHDLGKTVELSGPVGTEYTLAGNLLGHLSIIDAEIVEAADKLGIDGQNE DLLLLRHMVLSHHGLLEYGSPERPKLLEAEILHDLDELDASIMMIQGALTNIVPGDYSDR IFGLDNRRFYKPHTPNHLQDSGKDPSSLF >gi|238617813|gb|GG669608.1| GENE 509 526378 - 528924 1276 848 aa, chain - ## HITS:1 COG:lin2324 KEGG:ns NR:ns ## COG: lin2324 COG4717 # Protein_GI_number: 16801388 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 323 1 320 908 97 25.0 1e-19 MTIDYLKIYGYGKWIDTEISFNQSLEMIYGPNEAGKSTIIDFIISVLFGFQSKRQAIHGQ YIPKNHQDMYGGEIIFRYKGRRYRLIRTKGPKGGTVRFFDEDQHTELSEDDYQKIISPLD RNAYQQLFYFDGEDQQAAYQMSEDELRTRIQQIGITNSNQWFGLQKELEKQAKPIYSERG RKPELNLQLKRYQELEDKVQSARQDYLNFQTLKKEAVNTSNQLKTARLNLKKRQGRSREN QRIASSFPLLAKYNELQLVNESQLQEGFSDADVLTFQTMNSRISSYQDQLKTNKKQMEEI SSEIIESPSQRFYEQNKVKIDELTVQLVEVKNKLPQFRFIGEQLADNQQQLTKIQNDLPR NKSGQFPTPFNDADLILVTTMLNQSQNVETKVGSRLQQRGRSNDRSNYLIYLIAGIIVLL TILLHRFAFSWMGYFVAGFVAWYGFSQQQTGRGRSVQSQYAQVGRFDDQLTTLVSKYRLE GISQSQWLSIQPGLRRLLDLIDQENKLKSQQTSYLQQINHFLAKWQFASHWIPSNDDVLT HLAIIDQTVSQWRKQQDNYQSRKAGARAYEQTIAHLQDQLSSEQGKLIDFLSKRHLKSED GFYDMLNRQKHIQAKLERKKELFDQLKSAGMSDIQEMDRDGFQKQSEALENELSQLHEQI DNLTQKQTKLTIQMNDLISNGRYYDLKQELANQKSEILENVHKFLAISLSYQWLQRVLDI ATKGRLPKAIKGAKAYFSVMTQGNYSDVRFGDHIMVTRADGEQFNVNELSKGTLEQLYLS LVFSMAVGFSDDYPLPIIIDDGFMSFDATRKKAAFDVMKTISKHTQVLYFSAYRDLSGNL NTIDLTRI >gi|238617813|gb|GG669608.1| GENE 510 528924 - 530147 601 407 aa, chain - ## HITS:1 COG:lin2325 KEGG:ns NR:ns ## COG: lin2325 COG0420 # Protein_GI_number: 16801389 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Listeria innocua # 1 257 4 258 411 215 42.0 1e-55 MKFIHAADLHLDSPFLGLQNHTIPRDLWDKIRNSTFTSFERIVNDAIEQNVDFVLLVGDL FDRNDHSVHAETFLVQQLNRLNDHQIPVLISFGNHDYFSGRVNQLGYPENTYVFSNKVAT TTLLLKDGQRIAVSGFSFGSQWIKDPIIQNYPQASDADWNIGMLHGSLATVNSPEANYAP FNLNQLQEKGYDYWALGHIHKRQSLNPQKTINYSGNTQGRHINESGEKGYLMVEAVQHAL KPKFVATAPIIWQTIHIEFDGESVGELPETIFSHLASLNFYKLNFLRVVLDSHITIPSDI LKAIFDGTFLTALQNLNAQNWQQLNCWITSIKIHQSKPVIVSRLDQAYFDQAKSETFTKE TLADLAGPLKALSFINDDLNAQDTLDDIFNRSIAILQENIDHEKGDS >gi|238617813|gb|GG669608.1| GENE 511 530229 - 530573 370 114 aa, chain - ## HITS:1 COG:SA1663 KEGG:ns NR:ns ## COG: SA1663 COG3679 # Protein_GI_number: 15927419 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 114 1 114 114 65 35.0 3e-11 MSDKLMDTASQLQSELKDSAQFADLKAAFEKIKADPDTFKLFTAFQKLQLQLQQQQMQGQ QPAETDIKRAQDMANQVKENESISNLMTKEKALNDLLNDVNRVVTQPIIDLYRD >gi|238617813|gb|GG669608.1| GENE 512 530641 - 532734 1646 697 aa, chain - ## HITS:1 COG:lin2331 KEGG:ns NR:ns ## COG: lin2331 COG0744 # Protein_GI_number: 16801394 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Listeria innocua # 12 686 21 693 714 592 47.0 1e-169 MNNNNSTKSSRKWLGSLIRKFNRFCRKFHLIKWLIVFFLTVTLVGSIYLTFLAKTAHVQN LESSLSKTTEIFDASNQKAGELYAQKGTYVHLNRVSRNIPKAVLSTEDRNFYHEHGFSIK GIGRAFFLLLKNKLLHRDYISGGGSTLTQQLVKNAYLSQEQTMTRKFKELFLAIQVENVY SKNEILTMYLNNAYFGNGVWGVQDASQKYFGENASQLSVPDAAVLAGMLTSPSAFNPIDH PKAAKWRRDVVLQLMVENHKLTQAQANYYKKTPIEVRDTYVRKDGYKYPYYFDAVIDEAI SKYGLTESEIMNRGYRIYTNLNQSQQQQMQATFKNNTLFPANASDGTEVQAASIGVSPTT GGVTAVVGGRGQHVFRGYNRATQIKRQPGSAMKPLAVYTPALEAGYKFDSELVDKKKSYG TNHYTPKNYNNVYQGKVPMYEALAQSMNAPAVWLLNQIGVDRGYQSVKDFNIPVTKKDKN LALALGGLSSGVSPQQMAGAYTAFANGGKIMKPFYIRKIVDSTGKVIVDNTAKQQGRQIM PASVSKQMTSMMLGVFNNGTGADAKPYGYSVAGKTGSTEADNTGSSDATKDKWIIGYTPD LVVATWEGFDSTSQAHHLENLSGTGMGLLFRNEMQTMLPYTKNSSFNTKDAQTIVQDQQN SHNNLWDTIQKKTEQYSDSIGQKAKRFIDDAKKWFGQ >gi|238617813|gb|GG669608.1| GENE 513 532945 - 534636 1428 563 aa, chain - ## HITS:1 COG:SPy2151 KEGG:ns NR:ns ## COG: SPy2151 COG0018 # Protein_GI_number: 15675893 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 563 1 563 563 625 57.0 1e-179 MDYKAQVTNSILSVLNDELSSAEVYEKLEQPKSLSMGDLAFPAFSLAKVFHKAPNQIAAD LVSKIDQTSYEKVEAKGAYINFFLDKGKFSGQVLTTIIEEGSTYGQNDNGKGGNVPIDMS SPNIAKPISMGHLRSTVIGNSIAKLLVKNGYHPIKDNHLGDWGTQFGKLIVAYKKWGNED DVKKDPINNLVKYYVKFHKEDKEHPELDDEARETFKKLEDGNEEETELWKWFRRVSLESF NKIYDKLGVTFDTFNGEAFYNDKMDEGIQILKDKGLLVESQGAQVVKLDKYKLNPALILK SDGATLYITRDIATAIYRDRTYKPAMNLYVVGSEQTYYFKQLKAVLLEMGLQSAENLHHI PFGLITVNGKKLSTRSGRIILLDEVLDDAINLAKKQIEAKNPDLEDKDEVAKEVGVGAII FGDLKNERTNNIDFVLEDQLKFEGETGPYVQYSHARAESILKKASSIDFHTTDKELDDPA AWETVTALNEFPHVVESACKDFEPSEVAKYSLKLAKAFNKYYAHSKVLVEDDKLGARLAL VKSVSIVLKESLNLLGVKAPDAM >gi|238617813|gb|GG669608.1| GENE 514 535162 - 535500 227 112 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1237 NR:ns ## KEGG: Lbuc_1237 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 112 1 112 112 133 69.0 2e-30 MWITLNYVCWAILLINFIWGLTRNIKKRVIDSMMISRLFYWMIVISQVVIGLRSFHRHPL LVGIGAIITLIIIALSETAYGRKQEINYTPRLLWILIILGVIGAGIQTTVNF >gi|238617813|gb|GG669608.1| GENE 515 535580 - 536308 644 242 aa, chain - ## HITS:1 COG:L92665 KEGG:ns NR:ns ## COG: L92665 COG1794 # Protein_GI_number: 15674208 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Aspartate racemase # Organism: Lactococcus lactis # 1 229 1 230 240 241 52.0 1e-63 MKNFFTIIGGMGTEATELFIHILNERTPAKKDQEYLNYILVNHSTIPDRTDYILDHSKPN PFIPLAEDIKQQSQLDPDFFVIPCNTAHYSFDDLQALTSVPILHMPRETVKDIKHDVPSA KRVGLIATRGTLHDGIYDREIRHAGYDLVKPDEKTANQTMELIYDDIKEKNQVDGDLYHQ ILSTMVNKFSCDVVILGCTELSVAQQRAGDHSFPVIDAQTVLAKRTIELALKNRGVADKQ LD >gi|238617813|gb|GG669608.1| GENE 516 536322 - 537572 802 416 aa, chain - ## HITS:1 COG:L93420 KEGG:ns NR:ns ## COG: L93420 COG3919 # Protein_GI_number: 15674209 # Func_class: R General function prediction only # Function: Predicted ATP-grasp enzyme # Organism: Lactococcus lactis # 3 413 2 406 408 399 48.0 1e-111 MTNQSTDFTPVLLGSDFNVYGMARSLYDIYGKPVKAFAEVSLAPTRYTKIVDLELIPGFS EDPVWIDEMKKIKKRYADHKEPVILIGCGDGYAELISKHKAELEDVFVCPYVDYEMLRNL NNKENFYKMCDKYDLPYPKTKIITKAMYESGEEITQPFGYPVALKPANSVEWLDIHFEGR KKAFIIQNEAEFKDVVAKSYTNGYTSDFILQDFIPGDDSHMRTLNVYVDRNHQVKLMCLG HPLLEDPAPAAIGNYVAIIPEYNQDIYNRVQKFLEEIEFTGYCNFDIKFDTRDQSYKLFE INLRTGRSSFFVTLNGYHLADWIVQDYVYDSLTDQQTVYANKDKQHYFLWLGVTPKIFEK YAKENDVKKHAMQLIDEGRYGDTFWYAKDKSLKRFALYKWMMHNYVKDYKRYFVAK >gi|238617813|gb|GG669608.1| GENE 517 537579 - 539114 1082 511 aa, chain - ## HITS:1 COG:L53929 KEGG:ns NR:ns ## COG: L53929 COG0769 # Protein_GI_number: 15673788 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 30 500 35 475 483 338 43.0 2e-92 MAQITVDEVLMLLKEHDLLVKSQFSRLDQSFQSVAYNSKVVSDNCLFFCKGNFREAYLAD AQQRGASGYVSEKQYHNVTIPGIIVKNIQKSMSLLSAAFFGFPQNNLPTIAYTGTKGKTT SAYFTKSILDKVYDRKVALFSTINTVVGNKSEDVIKSSLTTPESLDLFTNMNKAVQNNMT HLIMEVSSQAYKKQRVYNLHYNVGVFLNISPDHIGRNEHPTFADYLHCKEQLLVNSKKCV INADSDHMVDVYYTAKATSQPEDIFVYHRKGSTMNEQLPKDFEYQSLADSLSENKIQLIS VSDKAKRLGIDGTYEISIAGDYNEGNAVSAAITSAMMGAHPTEIEYGLSHTTVPGRMEIY STKQHGTIYVDYAHNYGSLHSVLDFLKKQSPDGNVIVITGSTGDKGIDRREGLGKAINES ANVAYLTTDDPATEDPKVIADEIAAHIDPARVKTSYIADRTSAIQKAVLESKQGDLVVVA GKGHDAFQKINGKNVPYAGDATIVANLVKGL >gi|238617813|gb|GG669608.1| GENE 518 539143 - 541023 1506 626 aa, chain - ## HITS:1 COG:L0095 KEGG:ns NR:ns ## COG: L0095 COG0367 # Protein_GI_number: 15674210 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Lactococcus lactis # 1 609 1 613 625 479 42.0 1e-135 MCGFVGYVNQKDVPEGTINDMADRIKHRGPDDEAYFADENVSMGFRRLSIIDLAHGRQPM FNADQTKVLTFNGEIYNYKEIREELRDLGYEFKTDVDSEVLVYGYEEWGPALLDKLRGMF AFVIYDKKNNEVFGARDHFGIKPLYYYDDGDTFLWGSEIKAFLEHPNFKKELNLRLLPIH LSFEFIPSRETMFKNVYKLLPGQYFLHKDGKTETHRYYKFNYDHIDNSQTIEGDADKIQK IVDDSVKAHMIADVEVGSFLSSGIDSSYVLNEAAKLKPIQSFSIGFHHSKYSELAWSTEF AKTIKQKNTPIYMDGDDYFNFLPTMMYYMDEPLSNPAAIQLYYLSKETSKHVKVALSGEG ADEFFGGYNTYLESIPFDRYQKYVPKPVRKGLAAVARKLPRFHGKRFLVRGAQPLSERYY RVNYVFNYDDRSKVLKDPSINVDSGSYTKHIFDDVAGKDEMTQMQYFDINTWLPYDILHK ADRMSMCNSLEVRVPLVDKKVAEFASTMPVKTRITPEETKIALRTAAEREMPKKTALKEK LGFPSPIASWINDPKYHERIVHEFHSDTAKKFFNVDQLDFLLKQHAEGKSNMQKIFTIYT FILWYQIYFPEDTTEDTVKLVHRTKI >gi|238617813|gb|GG669608.1| GENE 519 541246 - 541494 230 82 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1242 NR:ns ## KEGG: Lbuc_1242 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 82 1 77 77 95 69.0 6e-19 MDEIVFFNPGDSIGNFHDHNEAVKTAQIYKQKQEADKKVLVVHGTNNQSFDIFLADDAIT HSNETSTDSKSNEKPYRVSDKL >gi|238617813|gb|GG669608.1| GENE 520 541628 - 542068 452 146 aa, chain - ## HITS:1 COG:SPy1780 KEGG:ns NR:ns ## COG: SPy1780 COG0589 # Protein_GI_number: 15675620 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Streptococcus pyogenes M1 GAS # 2 142 23 161 168 81 33.0 4e-16 MYEHILVPLDGSRNSKQALEEAISLAKKFDSKLSLLTVINNTNFYYGAGAAGMPPSMYDD QKKMADKILNDAKKYVDEQGVSYETSADIGNPKNIIAHIYPDQHGIDLIVIGKSGVDALN RLLIGSTTAYVVRNATTKVLVVNTKD >gi|238617813|gb|GG669608.1| GENE 521 542398 - 542712 275 104 aa, chain + ## HITS:1 COG:no KEGG:LGG_00710 NR:ns ## KEGG: LGG_00710 # Name: ygbF # Def: membrane protein # Organism: L.rhamnosus # Pathway: not_defined # 1 104 1 101 101 149 69.0 5e-35 MRFDTSKYPEGEKALNPNHVKKIKLLGKIATFTCISMYVSYIPEIIANFSGHPVSPIQPL VAMVNAILWVGYGWFKTYKDWPVIISNVPGVIFGMITVLTVYIH >gi|238617813|gb|GG669608.1| GENE 522 542968 - 543666 419 232 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1245 NR:ns ## KEGG: Lbuc_1245 # Name: not_defined # Def: integral membrane protein # Organism: L.buchneri # Pathway: not_defined # 1 232 1 232 232 313 72.0 3e-84 MQMSKIRFSTWLCVISVISMIGYLGYYGYWLFKGQPKFSNQSLLLIEVGIGIIIAMLPFF IEWVGHFYFPQVELIFFYIFLYMSIFLGSGLQFYGVQYWDKYEHILSAIMLAGLGYAIFQ GISRSKRNAWDMPFLMSLFSFTFGVTCGVFWEFYEFTADGLAGLNLQRYEAAGRMLIGRA ALMDTMTDLISDVVGALLMAVIGYLLMKRDPNASRFLVFRSKRQNIFSSYNF >gi|238617813|gb|GG669608.1| GENE 523 543797 - 544249 328 150 aa, chain + ## HITS:1 COG:lin2303 KEGG:ns NR:ns ## COG: lin2303 COG1846 # Protein_GI_number: 16801367 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 9 147 8 146 150 132 48.0 2e-31 MPETQPIRLDTQLCFQIYTANKKFNKFYQDALKPFNLTYPQYIALLTLWENAPMSVKKIG KHLHLDSGTLTPLLKRLESHGWITRTRSPQDERTVIIQLTDKALEQRDTVYDRVNSCQDL LQLSNEQIEDCTTALTMLDEHLDSYNNADK >gi|238617813|gb|GG669608.1| GENE 524 544362 - 545864 1224 500 aa, chain - ## HITS:1 COG:SA2406 KEGG:ns NR:ns ## COG: SA2406 COG1012 # Protein_GI_number: 15928199 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Staphylococcus aureus N315 # 14 498 12 494 496 471 47.0 1e-132 MQNFATKTEFKGNYIDGRWQPAHFGDRRQVYNPATGDLIGEVAESSVSDAREAIAAAKKS FYQTREWRDSDTQARADMIYKIAEKVNENREELAYLDTIDNGKPLREAQGDVDDAYHCFL YYAGLIKAPSGGSYGVNDGFGKMHSYMVHEPVGVCAQIVPWNYPLLMGVWKLAPALAAGN SVVFKPSEITPLSTVRLFDIFDEVGLPAGTANLVIGTGERVGAELARSQDVDMITFTGST TVGRSIMRSAADNVKKIGLELGGKSPNIIFSDADFEGAIEWAMLGIFLNQGEICSAGSRI IIEESLKNKFVLKLKERAEALTIGNGLDNPDMGPLVSRHQMRRVLEYIQIGKDEGAKLVC GGYQLTNTPYDLGNFIAPTIFDDCTSSMKIVKEEIFGPVVTIQTFRNEQEAIKLANDTQY GLAGAVFTKDGAKALRVIKEIRAGITWINCYNPTFNEAPWGGYKMSGIGRELGEDGLLEY QETKQININLNPGPVGWYIH >gi|238617813|gb|GG669608.1| GENE 525 546051 - 546803 462 250 aa, chain - ## HITS:1 COG:lin0199 KEGG:ns NR:ns ## COG: lin0199 COG2367 # Protein_GI_number: 16799276 # Func_class: V Defense mechanisms # Function: Beta-lactamase class A # Organism: Listeria innocua # 18 242 15 250 257 99 32.0 8e-21 MSKDEFQLIQNLVSKAPETTGLIIKVNHEQRLAVNANKAFRSASLIKLAILNDVLDSHFD LDKEIHVRRDKLVGGAGVLQLLSERTFQLKDLLALMISVSDNSATNLVIAHIGMEHVNQY LSKMGFYKTRLNRYLMDTSALESGKDNYTTPAESQRLLEMAITNHPMTKTWFLNQQFRYK LPGDFDETGNGIQVYNKTGEGYQIDHDVAEFVYGNKLISIALLTFGSRSRMNTIRLFNDV GKLGADFISR >gi|238617813|gb|GG669608.1| GENE 526 546800 - 547576 598 258 aa, chain - ## HITS:1 COG:BS_ykfC KEGG:ns NR:ns ## COG: BS_ykfC COG0791 # Protein_GI_number: 16078364 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Bacillus subtilis # 1 255 40 292 296 194 37.0 1e-49 MSNEQSVKLSDDDLLETQALFNDELIIDHFDGDWAKVFVSNQKDDSDSRGYPGWVPTKLL SDQQITYPPVTSTVRVAVKTAQLYDANKKPLIEISLGTILPEIGIDGNYLEVATPLGKAY LDKQASILPVAGQNSGETMVEMARQFLGMRYLWGGISSYGFDCSGLVYSMHRVLGFDIPR DADDQREGGMPVAPEAILPGDLVFFGYDHGRGYVHHVGMYIGEGKMIESRTPGKTIDIAS LTEPKFASEFAGFRRYWR >gi|238617813|gb|GG669608.1| GENE 527 547982 - 549067 702 361 aa, chain - ## HITS:1 COG:BS_ykfB KEGG:ns NR:ns ## COG: BS_ykfB COG4948 # Protein_GI_number: 16078363 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Bacillus subtilis # 5 355 3 353 366 324 49.0 1e-88 MAPVIKKIEISEAAVPLKRPFVTALRTVTTARTLIVKVEDSSGLIGLGEAAPTPVITGDS VSSIKEAVNEIIGPKLIGKSLVNSEDIKATIDQSMVHNSSPKAALNIAVNDLIAQHYQVP LYQLLGGHTDRIQTDYTVSVGTTDKMIAQAKELMNAGFSTLKIKVGSDSESSDVEKVAAI RKAVGPSINIRLDANQGWHHKQAVSAINQMAKLGLDIQLVEQPVAATDFEGMAYVTQNTQ TLIMADESIFSVQDAQRLISMNGCDLINLKLMKAGGIDNALKINTLAETAGIPCMVGSMI ESSVSVTAAAHLAAAKENVKYVDLDASMMFSSNPVKGGISNKANQIFLPHFAGLGFAQLS K >gi|238617813|gb|GG669608.1| GENE 528 549082 - 550701 1400 539 aa, chain - ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 13 539 12 549 549 353 37.0 5e-97 MHISRNISVLASVAGISLILVGCGQNSSQQKKTITTSTDSELTTVDPSKTTAVGTFNVLN NVDEGLFRLGKDSKVEPGIATSSTVSKDGKTYTFNLRKNAKWSNGDPVTAQDFVYSWRRT LNPKTASQYGYLFSGIKNADKIQDKKAAVSSLGIKANGKYKLTVTLEQRIPYFKLLMGFP VFFPQDSKTVNKYGNKYGTSSKTQVYNGPFTLTKWTGTNLSWTLKKNNHYWDKKNVKLDN VKFSVVKDPSTGLNLFNEGKLDMAQLSATQSKQMNNKKDLVSRQQSSNYYIAFNQKIKAF KNLKIRQAMSMIINRPMLADKVVAGGAISNDSFVSKGLAVSPKDGTDFTKDVTAPASMKY NPTKAKQLFKQGLQEVGLKSLHFTLLNSDTYDQKQLSEYLQSALEKLPGLHVTLNNIPGR VILSRQADHQFQATVANWFADFSDPITFLNILTSTNPSNISRWKSAQYDKLIDASNNDDG GNAQARWDDMVKAQNLALNDQAIIPLYQSGEKWMIKSSVKDVVYNTAGANYNFKNAYIK >gi|238617813|gb|GG669608.1| GENE 529 550829 - 551380 441 183 aa, chain - ## HITS:1 COG:L91998 KEGG:ns NR:ns ## COG: L91998 COG4990 # Protein_GI_number: 15674207 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 5 161 59 225 225 76 30.0 2e-14 MTQRVLLGVENISQLSWGAINGCEAASLLEGFHFNREAVEVSYGKFLLDMPISQDGNPYH GFGGSPFKNQSGKFEAIFTRPLIEWGRKYGRLRDLSGADSSWLFDEVQKGHPVLTYVTVH FEQPKWEKYPFGLVPVNNHAVILDGFDQNRVHVSDPIDGKYWMAKEKFETIYYSRKMAVS LTK >gi|238617813|gb|GG669608.1| GENE 530 551377 - 552486 837 369 aa, chain - ## HITS:1 COG:PH0078 KEGG:ns NR:ns ## COG: PH0078 COG3191 # Protein_GI_number: 14590032 # Func_class: E Amino acid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: L-aminopeptidase/D-esterase # Organism: Pyrococcus horikoshii # 17 340 16 344 361 299 49.0 5e-81 MGLQVPLLNDVSQGIKGKLNLITDVSGVKVGQITINDGDVHTGVTAILPHTGNVFRSKVP AASYVINGFGKSVGLVQIDELGTIETPIVLTNTFGVGTAINALTKRMLTQNIEIGDTTST VNPVVAECNDGDVSNIRKMYLSEDDVYSALDAAADQFEEGAVGAGRGMMCYDLKGGIGSS SRIVKIDDQHQYTVGALVMTNYGYLTDFVVNGAPVGQPLAQMLAADKEKEEKGSIITILA TDAPLNSRQLKRMAKRATVGINRTGGFIGNGSGEIVFAFSTTNLVEHFSENQFDKVIRFN DNKIDLFFRATAAAVDESVLSSLVHAKSVVDRKGRLRLSLIDAAKKLEESQPRFTEMLDM MFKQLGVAK >gi|238617813|gb|GG669608.1| GENE 531 552507 - 553214 667 235 aa, chain - ## HITS:1 COG:slr0959 KEGG:ns NR:ns ## COG: slr0959 COG1266 # Protein_GI_number: 16331018 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Synechocystis # 105 232 405 526 529 62 32.0 5e-10 MDDNKRLKAGDYFERIGIFVGLVIIVIFVQFPLSFIMMGHFSQLVNNIIAVIYILGFILA IAVAGYFYRKYAHPQKMSLTSRDISMIFIAYVSFFVVQIGLGLLNQAIYHQSSTANNKII YQYMNTNHLTLILMGFTAVFCSPILEELVFRGFLIGSMFTTNTRVAAVIVSGVLFAFPHM EDFNVISFLTYAILGGTLAYLYVRTKNIKVPIGLHFLNNLIAMGMMLAQIVLNSR >gi|238617813|gb|GG669608.1| GENE 532 553232 - 555091 1451 619 aa, chain - ## HITS:1 COG:CAC0625 KEGG:ns NR:ns ## COG: CAC0625 COG4934 # Protein_GI_number: 15893913 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted protease # Organism: Clostridium acetobutylicum # 23 617 34 623 625 415 38.0 1e-115 MQKQTLKKLIAMVTFVLAFTILIGVTNGTPVSAKSSTTNVSGSKQQLIDIVLKPKSQKKL DQFVYQSVDPTSTNYRKFVSSGQFASKFGQSTKNIQKLRQYLKKYHLRTEVYRGNLVMAV KGSTRNVQKAFKVKLVMVSKNKIRYQKATKKPTVPKSVSKSVLAIMGLSSYSTVSKSSRE FRPSSLYNRAATTLSQGEIAKHYSPSKFVNRYGISQLYNNGSTGRSKTIGIISFANYHPS DAYRYWNGMGIDVKSSRLSNYRTNGYKGSWNGYNETTIDVEQAGAIAPDSNIRTYIGKSD ITGMVNSLAAAVGQNVVDVLSLSWGQSEAQVAYEIKQGVTPAKYNQIMNLLFEQAAAQGI SVFAASGDNGAYDGISGGNTSLSVDTPANSPYVTAVGGTTLPRTYTVNKQTVKIEKERAW ASEFLYPNYKSQKFLGFEDWVETFFAGGGGGFSKYNAVPKYQSGFSGIGTYDATRLWSFK NGKAKLLDTPVNISGKSQGRNVPDLSANADPNTGYSIFITPKKDSSATGEWEISGGTSVV APQIAAASVLMSNNSAGRLGFWNPQIYRFASQSNSPFTVLDSRTNNTNLYYTGQPGKRYN QATGLGTADFSKLDKLFNS >gi|238617813|gb|GG669608.1| GENE 533 555121 - 555363 263 80 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227513588|ref|ZP_03943637.1| ## NR: gi|227513588|ref|ZP_03943637.1| hypothetical protein HMPREF0497_2710 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0497_2710 [Lactobacillus buchneri ATCC 11577] # 1 80 8 87 87 127 97.0 2e-28 MKKSISIILVFIVLIIAGAFYLTRGMTWSSLEFVMIWVGAIIAMHVVITPLVISIVRARD QRKAAEEEAAKQQSGNISKD >gi|238617813|gb|GG669608.1| GENE 534 555492 - 555866 290 124 aa, chain + ## HITS:1 COG:L153973 KEGG:ns NR:ns ## COG: L153973 COG1970 # Protein_GI_number: 15674083 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Lactococcus lactis # 1 119 2 122 122 114 57.0 4e-26 MKEFKAFISRGNVIDLAVGVIIGGAFTAIVTSLTTNLINPFIGLFLGQIDLSNLMVKVGG ATFKYGAFINSIINFLIIAFVVFVIIKVINRVIKKEPAKVVPDKKELLLEEIRDLLKNEN REIK >gi|238617813|gb|GG669608.1| GENE 535 556012 - 558729 2261 905 aa, chain + ## HITS:1 COG:L39593 KEGG:ns NR:ns ## COG: L39593 COG1554 # Protein_GI_number: 15672410 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Lactococcus lactis # 118 905 6 769 769 568 38.0 1e-161 MRTFAIRARDGVMELNYSEDSNKPPFRKFMITYNPKFSIGDNLENIKVALTGLPVDAAII ENSLNYEFSDTIIGINHQKIDIGLAIANMMNVPVVNLNKVKEVGLQKAVSDKSNYLKWHL DYYGEYSGKRNYGQEAMLTIGNGYFGLRGAYVEANADQDNYPGMYVAGVYNQLTTKINDR DVVNEDLVNLPNSQFISFGVDHQQPFKIKKEDIQDIYRSLNLKTGVLTTTLHIQLSTGHI LEVRATKVANMTNWHRYAIKYELKPINFSGSLQIYSEIDGSVLNGNVERYSDFNQHHLDI IGMSAHDNQISMSGQTKTSKVAFVINSKLDSQDFDTTSSINTDTENQLIRQTLSLDVEPE KSYEFEKCVSIFTGNADDDKLESAAQSELNDSSFNDTLNDSQKFWKDVWNKSDIKITNDI TSQKLTRVNIYHMLVTSAALASGKLDASVGARGLHGEAYRGHIFWDVTFDLPFYAIHYPA IAKQCMLYRYNRIDEARKYAKSEGKDGAMYPWQSGMYGDEQSQFVHLNPVSGEWDPDNSR LQRHVSISVAYDVLKYVQITGDRDFMEKYGLEMLLSICKFWVSMVSYDKDADRYDIHNVM GPDEFHEEYPNADEQGLTNNAYTNIMVSWLFDKVATVVSKQKADVLKVANNKSGTDSNLL TQMSDIAHKLRLDINDEGIIGQFSGYFNLSKLNFDSYRKRYGDISRIDRLLKGEGKSPDS YQVAKQADTLMAYYELPFSEVEDVINRLGYKLPANYFTSNLRFYLDRTTHGSTLSRIVYS VLDEMDGNMDQSWQLFSTALFSDYYDIQGGTTAEGIHLGVMGATLQIETGCYGGVRFDTD EVSVNPHLPQNWKKISFKQAYQGIKYQFEITHHEITVTADAETHIKVAEKDYSLTKNKAT TISYK >gi|238617813|gb|GG669608.1| GENE 536 558749 - 559420 733 223 aa, chain + ## HITS:1 COG:BS_yvdM KEGG:ns NR:ns ## COG: BS_yvdM COG0637 # Protein_GI_number: 16080508 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Bacillus subtilis # 7 221 1 215 226 180 40.0 2e-45 MAKFSDIKGFVFDLDGVITDTSVFHSQAWHQVADKVGAPWSKELEDGLKGISRMDSLEMI LKAGNLSDQYTEDQKVALATEKNTNYLKLVDQMTPDNILPGIKGFLDDIQSHGYLLSLAS ASKNAPKVLEKLQLTTYFPKIVDPKTLSKGKPDPEIYLKGAELINLKPEQCIGVEDAAAG VESINAAGETSIGIGDKQILKDADINFEDTGEMTLTNIQKQMA >gi|238617813|gb|GG669608.1| GENE 537 559666 - 560436 628 256 aa, chain - ## HITS:1 COG:lin2311 KEGG:ns NR:ns ## COG: lin2311 COG0561 # Protein_GI_number: 16801375 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 3 255 4 256 256 175 37.0 9e-44 MYKAVVFFDLDGTFFDNEKNVSKENISAVNELRENNILPIISTGRNIFEIQYVIDETGIN SLVSANGSYVQYEGKKLKAEEISDEVIEEILAFAKKQGDVISFYNNEGFALTAENDLTKV NYRLLRLTPHVEPTFYKSHEVNFLNVFNYDKDKLYQDQFKGKLSLVRNNPRCLDTMKWGV SKQTGIQAMLSKANLADIPSYAFGDQLNDLQMFEEVDYPVAMGNGHPDVKAKASFVTTSN INHGIVNGLRHYGLIK >gi|238617813|gb|GG669608.1| GENE 538 560590 - 561243 495 217 aa, chain + ## HITS:1 COG:SPy0121 KEGG:ns NR:ns ## COG: SPy0121 COG1428 # Protein_GI_number: 15674338 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Streptococcus pyogenes M1 GAS # 1 209 1 210 213 214 51.0 1e-55 MVIITAGMIGVGKTTLTGKIAAHLGTKAFFEPVGDNPVLPLYYSNPKQYGFLLQIYFLNK RFSMIKKALSDDNNVLDRSIYEDALFTRENNADGNISDTELSVYLKLLDNMMTELNQLPK KAPDLLVYADSDFDTIKYRIKKRGRDYEQFDNNPGLENYYYKMWKAYQKWFDDYSVSPKI KIDLQQHDLSYQKNIDFVLGMIDDELAKIRQPQREAM >gi|238617813|gb|GG669608.1| GENE 539 561451 - 562185 465 244 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1261 NR:ns ## KEGG: Lbuc_1261 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 5 241 23 260 262 200 43.0 3e-50 MTHRIDRQVIVLPLLLGLGDIAQVNLLETRKTLLKIRNTHEGRDNTDEWYQSILLGLKEL DKVVFEQKSLRIWWTDLPDDSCGFAWLCDYLKDIGNQISSVHVPLTFSHSRFLYELNNLG ELVIDDLNKYHLFDYEQSLGRDARISHSYLWRDLRKDNTPLRIMINGHLMSQPINFYDRF LLSHVSPTVFTNILQVIGQAIGDGPSGVPDWWYRHRIDYLISKRELWYEKPVGQSAGYIK LRIK >gi|238617813|gb|GG669608.1| GENE 540 562493 - 562978 500 161 aa, chain - ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 6 152 5 143 152 109 40.0 2e-24 MLEFNYHNILVGVDGSKTAVKAVKKAIAVAHRNSAKLFIVAVINNRDFIGVSKSASIGFG NIDPSTIESLKDNFEKLVNGYAKQAKDAGLTNVEAFVTFGDPKTELATEIVADKKIDAIV IGATGVNFFTRLTLGSTAAFVIAHAPCDVFIVHRPKKGDHD >gi|238617813|gb|GG669608.1| GENE 541 563000 - 564403 1310 467 aa, chain - ## HITS:1 COG:lin1661 KEGG:ns NR:ns ## COG: lin1661 COG0624 # Protein_GI_number: 16800729 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 3 464 4 468 470 404 44.0 1e-112 MTIDWQEQAKKYRDQYLQDLRELISIPSVRDDDHKTDEYPLGEGPTKALLKFLSFGKRDG FVTKNLDNIVGYIEYGAGEETFAMQSHADVMPAGDGWETDPFVMTEKDGNLYGRGTSDDK GPGLAAYYGLRILKDNGIVPNMKIRLIIGTDEESDWTGMKHYFDVEPQPTLGFSPDAEFP LINGEKGNATYETTFGSSNGSEYTLKEFDSGLRLNMVPGNATALVETDDNEKFVDAFTDF LDKNPLSGDIKATGDGIAVHLIGKQAHAMAPENGVNAGTYLAAFLNQFNFEKDAKNFLSF IADYLHDDTRAHKIGADYVDDVMGDLTMNVGIMKFDFRKGGLVNTNFRYPKGTDDTKILQ YLLKVADKLAGRVKEVGHMVPHYVDPSDPIVKTLLRVYSQQTGDADAKPEVVGGGTYARM MKRGVAFGALFPGTQDTMHQANEFQPINDLLKAMAIYGQSIYELTAK >gi|238617813|gb|GG669608.1| GENE 542 564521 - 565363 308 280 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|126666946|ref|ZP_01737922.1| Ribosomal protein S15 [Marinobacter sp. ELB17] # 9 270 231 498 503 123 31 2e-26 MKEITKNILTKVIRKRPADSFKGTYGKIALIGGNRNFGGAIIMASLAAVYSGAGLVTTIT DPTNQTSLHDWLPEAMFVDYNDFETASPIIKGADVIVIGPGLGTDNIALSLLTKTFEVAH TNQTLIIDGSALTLLAHNHLSLPKSSLNILTPHQMEWQRVSGIEIADQNPTANQKIADQL KAIVVVKSHRTEVYANGKVYQNTGGTPAQATGGMGDTLAGLIGGFTAQFENKTAATLAAV YTHSAIADKLAKKQYVVLPHQISEALPKFMFKNQESKNDD >gi|238617813|gb|GG669608.1| GENE 543 565356 - 565541 64 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIKGNLPTYFMSKPKRIWHIGSYLQFVESVFSAFYLILNSCLNRALLGPKTISATLLLRQ K >gi|238617813|gb|GG669608.1| GENE 544 565457 - 567106 1229 549 aa, chain - ## HITS:1 COG:SPy0390 KEGG:ns NR:ns ## COG: SPy0390 COG2244 # Protein_GI_number: 15674534 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Streptococcus pyogenes M1 GAS # 14 546 12 541 544 323 37.0 4e-88 MIDNNQSHSDNSREQMLSGSAWMTAGSILSRFLGAVYIIPWGIWFGDYFFRGNALYGLGY NIYSFFLIAAIAGIPSAIAKQVAHYNALNEYGIGVQLYKRGLVLAIGTGVICAAALYFGA PLIDGGNANVVPVLHSLAWAILIIPTMSLTRGYFQGYQQMAPSAISQFVEQLARVAYMLI TAFLIMRVFNGNWVTAVSQSTFAAFIGAVAGLLTLGWYYVSRRDTFRSLVSNSSNKVHVE PRTLYHEIITQAVPFIILGAGITIFMLIDQFTFFKIMRMATNYSNDMLSDLYAMFAVNSN KLIMITISLSSALAITAVPMLSVALTNGDKKEIAKQNSTIMVLFMFVMIPAALGMAAIAG PLNRLFYGVNEEALGANILTFSSMISIPMGMFVVISAVMQGLSQNRRAVKFFAVGTLIKF IIQWPCVYYLGAFGPLLSTAVGLTIANWLIIRSLNRQFGFERKNLNWAFRKIGLYSLLMY VVTLAAVYGANYLVGLVSTPFGRIASLVVTVIGVAFGGYVYAYFCLKSRVADMVLGPRSA RFRQLLRIK >gi|238617813|gb|GG669608.1| GENE 545 567311 - 568336 563 341 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1268 NR:ns ## KEGG: Lbuc_1268 # Name: not_defined # Def: acyltransferase 3 # Organism: L.buchneri # Pathway: not_defined # 1 335 1 335 342 501 85.0 1e-140 MSKKRIEWIDVAKAIGIVAVVFGHAMTRHGTMFHFLYWWHMPIFFIMGGFFLKPIINNNW WGFFKKRILPLLISYLICGGGLILLSHFVRGESWSYTTFYFVRLLWGGRTLNHYLSVFWY INVYLLALVLTSIVITYVKTREYQIIIAFISLIVSTSYKHVWFFKWKYIPWDFDVAFIAL FFMLFGYLYFHKIQQFVKDLWIMIPCALITLWIFWMQHMDRFNFALFLKSKIIHATFHHI PISRVSYILFIPILVCMVVFSFSYYFCRFFPQFIIKPVQLLGQQTLGIMYLHKAVIDIID EMGYKSAIMETILAVIISFALSLLYGYIKRKVKGTSNKAVS >gi|238617813|gb|GG669608.1| GENE 546 568510 - 570930 2327 806 aa, chain - ## HITS:1 COG:lin1769 KEGG:ns NR:ns ## COG: lin1769 COG0495 # Protein_GI_number: 16800837 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Listeria innocua # 1 804 1 801 803 1194 69.0 0 MAYNHEVIERKWQHYWKEHKTFKTLDDTSKDKYYVLDMFPYPSGQGLHVGHPEGYTATDI MARMARMQGKNVLHPMGWDAFGLPAEQYALKTGHNPRSFTAQNIKTFKRQIRSLGFSYDW DREINTTDPAYYKWTQWIFEQLYKKGLAYEDNIEVNWAPDFMGGTVVANEEVVDGKTERG GYPVYRVPMRQWVLKITAYADRLIDDLDTVDWPESIKEQQRNWIGRSRGASVFFKVKGHD DDQIEVFTTRPDTLFGATYMVLAPEHELVDQITTPDQKSEVDAYKEKVSRKSDLERTDLN KDKSGVFTGAYGINPINGKEVPIWIGDYVLESYGTGAIMAVPAHDDRDYEFAKKFGLPIV PVIEGGDVADAAYTGDGPHFNSGFMDGMNKEDAIKAAIDWLKDHDAGKEKVNYRLRDWIF SRQRYWGEPIPVIHWEDGETTLVPEDELPLRLPKAKDIQTSGGKESPLANLTDWVNVVDK NGRKGKRETNTMPQWAGSSWYWLRYIDPHNDHAIADPEKLKYWSPVDLYVGGAEHAVLHL LYARFWHKFLYDLGVVPTPEPFQKLVNQGMILGTNHEKMSKSKGNVINPDDIVDEYGADT LRVYEMFMGPIDAAKPWSTEGINGAHHWLDRVWRLMIDDNNHLRDRVTTINDGHLDKVYN QTVKIVTNDFAHMRFNVGISQMMVFVNDAYKADALPIQYMEGFVKMLSPLAPHIAEELWN LLGHDGTITYEKWPTYDASELVENTVQMVIQVNGKVRSHLKIARDAAKDKVESAAKNDEN VKRYLDGKTVRKVIVVPNKIVNIVVK >gi|238617813|gb|GG669608.1| GENE 547 570867 - 571061 88 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFYVLSSNVAIFAQLLHDCMPFLQLPPFKILQINEKMPYKKPYLTSYRTINRGTTYILNV DYGH >gi|238617813|gb|GG669608.1| GENE 548 571325 - 571966 498 213 aa, chain + ## HITS:1 COG:SP0489 KEGG:ns NR:ns ## COG: SP0489 COG0671 # Protein_GI_number: 15900403 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Streptococcus pneumoniae TIGR4 # 8 200 5 197 216 91 32.0 9e-19 MILKVRNKSFLLGVSAFIVFLIFMSGVLTHADWISNFDSQVSQFVRSDLTPKLTLLTIHF TQLANVIPVISFTLGMTLILTLTDHFRAAVFLVINSLGLSGPVNMLVKHYVNRPRPTLHH LVTVHSTSFPSGHSMSAMMIGGSLIIIANHLLKKRSYRVIFDILIGLLIFFIGISRIYVG VHFASDVVGGWSLGLCLLLLSQFVFNRFLGGTA >gi|238617813|gb|GG669608.1| GENE 549 571963 - 572538 487 191 aa, chain + ## HITS:1 COG:lin1771 KEGG:ns NR:ns ## COG: lin1771 COG0500 # Protein_GI_number: 16800839 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Listeria innocua # 8 191 7 187 191 181 50.0 1e-45 MNQLPNALQFSHQLLKEAVSTGDQVIDGTIGNGNDTLLLAKLVGENGTVYGFDIQQQALQ HTISLLKKNLSSLQNVQLYKKSHAEIDNILDDNVRISAAIFNLGYLPGGDKSIITKSTST LTALTACLKKLQIGGLVVMVIYYGHPGGKKEEKSVVNFCQNLPQKNFAVLNYSFVNQAHE PPFVLAIQKLK >gi|238617813|gb|GG669608.1| GENE 550 572594 - 574078 1130 494 aa, chain - ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 13 486 9 485 491 359 46.0 7e-99 MTATASKRNIILVTIALFVATFMCAIEGTIVSTAMPTIVGDLRGVALMNWVFSIFLLTNA IATPIYGKLADSIGRKPIFMIGTTIFIIGSVMSGLSNSMIILIFWRAIQGIGGGAILPVA NTIIADIYPLEKRAQVLGLNSSAWGIASVIAPLLGGFIVDNLSWHWIFFINLPIGIIVLL MIQFFLHEEKRKIESKMDIGGTAWLTIMLLAVMYAFQVIGQTPIRWEIVAGCTILTIVSA MMFIRKERLASDPLIPMELFGNRTFVVQNLVIALMSGFLIAYEVYLPDWTQGILGLRASM AGFAVTPSSLMWIVGSFVAGKLLVKLSPSQIINISLAFILIGAITMVVIPAYTPFTAFLL ISTICGIGFGLTTTTSIISVQNVVKPTEIGVATSFNTLCRTLGQTLMISVFGIVMNMTML RGVRQTDGATLKMMDKLINPQTANELSGAILPKLRMILYSSLHNVFVVGLILILTAYAIN WFDRKKTDVQDQRP >gi|238617813|gb|GG669608.1| GENE 551 574211 - 575401 1269 396 aa, chain - ## HITS:1 COG:SP0762 KEGG:ns NR:ns ## COG: SP0762 COG0192 # Protein_GI_number: 15900656 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 392 1 393 396 562 72.0 1e-160 MREKHLFTSESVSEGHPDKIADQISDAILDALLTKDPDARVACETSVTTGLVLVFGEIST KAYVDIQKVVRDTIKRIGYCNGKYGFDGDSCAVIVALDEQSPDIAQGVDKALEERNGNTD PFDKIGAGDQGLMFGYAINETPELMPLPISLSHKLMRKQAELRKNGTIGYLGPDAKAEVT VEYNDDDKPFRVDTVVLSTQHADGVELDQVRKDVIEKIIKQVIPEKYLDDKTRYLVNPTG RFVIGGPEGDAGLTGRKIIVDTYGGYAHHGGGAFSGKDATKVDRSASYAARYIAKNIVAA HLADQVEIQLAYAIGVAEPVSIDINTFGTGKVSEEKLIEATRALFDLRPAGIIKMLNLKR PIYEQTAAYGHFGRTDVDLPWEHTDKVDALKEYFNN >gi|238617813|gb|GG669608.1| GENE 552 575659 - 576294 165 211 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1276 NR:ns ## KEGG: Lbuc_1276 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 211 24 234 234 162 51.0 7e-39 MLFSNVGLKNFFINYHLLYLFFIGLGFSGLLSQVISKNKNAIIFTICDAIVVLMGIKILL SDHSFNGWLLLLDFVLANILILTSIINEPHCQWIIYGIINGSGIVFLFNITYHHYFSLMS LMSITLLIFANIFFSFPVFMKKGNRLSLLIILVLILAICITLELTFLKIIFISLILGFYL FFEWKVNNNKYDKRNNTSLICLLLFSLAACL >gi|238617813|gb|GG669608.1| GENE 553 576883 - 577791 606 302 aa, chain - ## HITS:1 COG:lin1052 KEGG:ns NR:ns ## COG: lin1052 COG0598 # Protein_GI_number: 16800121 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Listeria innocua # 1 298 13 311 314 109 25.0 7e-24 MITIHKFKTYTWIEVIDPRTDELNDVISKYRLPQKFEGYMLDRHEQPRATYDALSDTNVL VIRALANGLDTNATTVPVFLGFNDDVMITSCHGEDQAKLINQQSNQDFLLISDHIFAILG AILVPYFEMLDEVSQRADKFAGHRLGIITNRRLDELTILKTRLVYLRSATAGNLVALEEL QGDLKQKLRLTADVEQRVTQQISDLVIEYKQCQAMFDVQGNVVNETESAFGNILNNRLNQ TMKFLTVWSLVLAVPPIVSGFYGMNVKLPFADRSEAWFDTLVLTVGLMVVMLLVYIGRNK KQ >gi|238617813|gb|GG669608.1| GENE 554 577886 - 579250 791 454 aa, chain - ## HITS:1 COG:BS_ydgF KEGG:ns NR:ns ## COG: BS_ydgF COG1113 # Protein_GI_number: 16077629 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Bacillus subtilis # 9 450 14 457 458 478 56.0 1e-134 MEKSKGANSLSRSLKSRHIQMIAIGGAIGTGLFLGSGSAIHTSGPSIIISYLVVGIFCFL LMRAIGELLLSDTTKHSFLDFVKEYLGDRWEFVTGWTYWFCWISLAMADLTATGIYIKYW FPGVPQWIPPLIILLCLFAANLVNVGLFGELESWFSMIKVVAIILLVIVGFGLAIFSVKV GNSTASFGNLFSHGGLFPKGAHGFLLSFQMVVFAFVGIEMVGLTAGETDDPEDNLPKAIN SLPIRIGLFYIGSMIAVMSVYPWNEITTTSSPFVQVFSGVGIVGAAGILNFVVLTAAISA TNSCLFSTSRTMYALSMGGNASNFLTKLGRNGVPNIALNFSTAFLLIIVILNYFIPAGVF NLVSSVSTINFVVVWVVLLIVHIKYRRAHPKGISRFKMPGYPITDYLSLAFFIFILGFLL VSASTRVAMIISIVSVLIMLLAYHLINAKQPSRH >gi|238617813|gb|GG669608.1| GENE 555 579619 - 580176 521 185 aa, chain + ## HITS:1 COG:BS_yueJ KEGG:ns NR:ns ## COG: BS_yueJ COG1335 # Protein_GI_number: 16080227 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Bacillus subtilis # 6 185 4 183 183 215 52.0 3e-56 MASHTALLIIDYTNDFVADKGALSCGITGQKLAPRIIELANEFVSNGDWVILPTDVHTPN DPYHPETKLFPSHNVRGTWGREFYGDVAKWYDQNKNQDKVYMYDKTRYSAFAGTDLDIRM RERHVDTLHLVGVCTDICVLHTAVDAYNLNYNLVIHEKGVAALSSAGQTWALDHFKHVLG ASVID >gi|238617813|gb|GG669608.1| GENE 556 580336 - 580698 366 120 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1281 NR:ns ## KEGG: Lbuc_1281 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 120 1 120 120 177 80.0 9e-44 MSEKLPTYNHDQWQKAKDAVLEEYEDYKQLLRQQGVDYTIKNARRLLIYQDLVAEWQHKL DTVITDLEDNVFALSIFRDLKTRKVSSLLERGYTHISNWPDFNPSALALWLELEEDEAMA >gi|238617813|gb|GG669608.1| GENE 557 580886 - 581305 457 139 aa, chain - ## HITS:1 COG:SA1984 KEGG:ns NR:ns ## COG: SA1984 COG1302 # Protein_GI_number: 15927762 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 12 126 42 154 169 68 36.0 2e-12 MAQENTSLETVLTYNDDVLAKIAGNTVRDVDGVLSLEGNLIDSMTDRFSDSVDPTTGVKV DLDNDEKKVKLSMDATLEYGKSIPTVFDKVTAKLCQALNDMTDLTPVEIKINIKDLQTRE EYVKKNRKAEKGEKKKDKD >gi|238617813|gb|GG669608.1| GENE 558 581355 - 581789 407 144 aa, chain - ## HITS:1 COG:SA1984 KEGG:ns NR:ns ## COG: SA1984 COG1302 # Protein_GI_number: 15927762 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 7 126 34 153 169 99 42.0 2e-21 MDTKVTQDTELTRKLTFNNAVIEKIAGLVCRNVDGVLSLDGGMISELAGRFSKKTDPTKG IDAEVGDKQVALDMDATIEYGSDARKIFDEICTRTQNAIKNYTGLDVVELNLNINDVLTK KEWEQQSNSQKDEIANSVHDERVK >gi|238617813|gb|GG669608.1| GENE 559 581827 - 582009 243 60 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227510600|ref|ZP_03940649.1| ## NR: gi|227510600|ref|ZP_03940649.1| hypothetical protein HMPREF0496_2763 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_2763 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 60 1 60 60 77 100.0 3e-13 MNSIVYGGIIGMVCGVVWAFSGFNGVMLVLTLGIAGALIGAVVGKFGGIKSLINQLVNDD >gi|238617813|gb|GG669608.1| GENE 560 582021 - 582584 493 187 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1286 NR:ns ## KEGG: Lbuc_1286 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 187 1 188 188 137 45.0 3e-31 MRHFSKFAILILSVIGLVQSLWFVGLVVPIDYLSKVVIGTTQTSDIWVELAAFGFSILIG LTCIIGILFSLLAPTKVKSLEFHSPNGKLSISQRAVEKVLQEAILSQGSVTDVKANIRIT GRKRKTRVRISSVGRDNEGLVKIGEEIQMIVVKEIGRIMDIPVKKVSVKVKPRDSMKNKR TRQPRVV >gi|238617813|gb|GG669608.1| GENE 561 582613 - 582864 270 83 aa, chain - ## HITS:1 COG:SPy1265 KEGG:ns NR:ns ## COG: SPy1265 COG2261 # Protein_GI_number: 15675224 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 2 77 1 76 82 62 57.0 2e-10 MLSLIWTLIIGGVIGAIAGAITSRNLPLGWIGNIVAGLVGAWLGQALLGSWGPQLAEIAI VPAVVGAVILVFLVSLLTRGLAS >gi|238617813|gb|GG669608.1| GENE 562 583076 - 584131 822 351 aa, chain - ## HITS:1 COG:lin1003 KEGG:ns NR:ns ## COG: lin1003 COG1434 # Protein_GI_number: 16800072 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 85 336 80 329 344 173 40.0 4e-43 MLSGLLTMLGIQVVLLVVLATYLIKKRNTSVIGWLINLNLLCFMALLFEALVVIQNVLLA AIFAILLMAVVVIVGGGLIFSFVFLFINAYFAWKREGRSLSSSLTLILGIGVILVDIFFL FDPINAPKPIQNFITMFLTLFIFYILLTVWNTMVSMIVYNLYFPKYDKDYIIVLGSGLID GYKVGRLLGNRINKGIEFYHLQLKKTAKHAKLIFSGGQGGDEKIPEGVAMKKYALDQGVP ETDTLVEDKSINTRQNLIFSDRIIKNDSGRDDNKIVFVTNNFHTLRGGILAGKLGIPATG IGAKTPFYYLPNAVIREYLALFVMHKRFHIAMMSLIFVVALLAGASSLIIK >gi|238617813|gb|GG669608.1| GENE 563 584500 - 584967 409 155 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1289 NR:ns ## KEGG: Lbuc_1289 # Name: not_defined # Def: regulatory protein MarR # Organism: L.buchneri # Pathway: not_defined # 1 149 1 151 152 211 76.0 7e-54 MTKTHEELLQEAINVYLSSLKYLDNFVSEPATKYGLSFEQYLILHTIADREHVSLMDIAS ERKVTRSAISRQIKVLLQHDYIYQKPAESDRRRLYLHLTKSGEQVESKVTELTTARFDEW ITHYGEDKVREILDFVKDFSSQEMNDFNNSKQSNQ >gi|238617813|gb|GG669608.1| GENE 564 585101 - 585943 635 280 aa, chain + ## HITS:1 COG:SP1273 KEGG:ns NR:ns ## COG: SP1273 COG3475 # Protein_GI_number: 15901133 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: LPS biosynthesis protein # Organism: Streptococcus pneumoniae TIGR4 # 7 267 1 258 267 128 32.0 1e-29 MIIGGHMSDILTQTIHQIELGIFNRFVQIATKHHLHYVATGGTLLGAIRHHGFIPWDDDM DIAMLRDDYQRFLKIAPKEFKNDHYFLQTPWSDHNFALSYAKILDQNTFIEEHNNINNAR KGVFLDIFPLDKIPTSDAKRRRQMIDIKRLDSRIYLKLRYNIIDNPIRKFYGALSTEQID TANDFKKARENMMTAYNDRVNLDQVKNLASQYAYEKEIFSLEQLQETEIVPFEDTQIIVP SDYDAILKQMYGDYLKLPPENHRSEKHIIKLIYNNQEFER >gi|238617813|gb|GG669608.1| GENE 565 586018 - 586326 268 102 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1291 NR:ns ## KEGG: Lbuc_1291 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 102 1 102 102 154 84.0 1e-36 MFDPNQSRFASFSIVSTLPDQAIDNVWFIIDNDLQNVFPLSNLIKFNLVNSDGKLSYDFI QGNELVATFDSPYPYDNSYPKSLVVYDSGNRQIIATPSEINI >gi|238617813|gb|GG669608.1| GENE 566 586768 - 587076 294 102 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1292 NR:ns ## KEGG: Lbuc_1292 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 102 1 102 102 163 89.0 2e-39 MKSHEVLTLIEEITRNDGTKYIEISNMVQNGRAELAAERGFIKQVRILQLNIPHSPHVQK YERYINENYVMPTEDMDHFEEWKKTPEMKEEISIILKENHIA >gi|238617813|gb|GG669608.1| GENE 567 587310 - 588383 863 357 aa, chain - ## HITS:1 COG:lin1063 KEGG:ns NR:ns ## COG: lin1063 COG1134 # Protein_GI_number: 16800132 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate transport system, ATPase component # Organism: Listeria innocua # 1 264 1 264 335 318 56.0 8e-87 MEENYKVKVQNVTKEYDLFKTQSEKLRSFFAISKHQIPHFWSLMGISLTIQPGETLGLIG VNGSGKSTLSNIISGIIPQTTGYVDVRGDTSIVAIHAGLRNNLTGRENIRLKSLMQGLTN EEIDEMMPDIIAFADIGDFVDQPVKSYSSGMRSRLGFAIAVHINPDILIIDEALSVGDDT FYQKCVDKITEFKQEGKTIIFVSHSLKQIEMLCDKVAWINYGELKMVGETKEVTTKYREF TKWFKKLSKKEKHDFETERKNVQKNFSIQNYQKQVTEEMQKAAPQEKNVHSKVHRLFYSS VISEKMSVGNQLLTWAVLLVVIFFCLVNISGYSVGHVLNDPSLLMHPSDVLHLPDAK >gi|238617813|gb|GG669608.1| GENE 568 588499 - 589167 502 222 aa, chain - ## HITS:1 COG:lin2838_1 KEGG:ns NR:ns ## COG: lin2838_1 COG1705 # Protein_GI_number: 16801898 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 1 128 179 307 340 97 47.0 1e-20 MAQAIVESDFGRSTLSTEANNYFGIKGTYNGQSVTMSTGEYTSKGKHYMTAAQFKKYPSI VASIRDNASLLRHGTLVDPNYYSGTWTTNAVTASDAAMALATTYATDMNYGNKLNAIIVK YHLDELDAHNGDSTIGTAGNINEQIEQSLKKELGTSASTRQSGRTNQTGQVRSKITSIPE RIIPRSVFEPRKAQSSADNEYTLQLNLSLEKIIKNGNTKRIH >gi|238617813|gb|GG669608.1| GENE 569 589435 - 590481 651 348 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1295 NR:ns ## KEGG: Lbuc_1295 # Name: not_defined # Def: mannosyl-glycoprotein endo-beta-N-acetylglucosamidase # Organism: L.buchneri # Pathway: not_defined # 25 348 178 501 501 267 53.0 5e-70 MGSLCQCQPLSIIVTAKWKTRLPAIKIIQQYGLDKTFGETTDQASSSSSDASTSSNATDS TSSSSSTSSSDSSNSVTTTTQDATPTLSSVKYYKASAAQSVPLSKKYANYYVYNHIKGSS ANEKRYSWKSLGVKKRVTVYLDMRGVKRESSGNWYRFRFYPNSKSKRFWVYAPALQFSTI YTGATSGSLVPNKATNGLLYNHVLGSPLLAKKTAKISSLKSKTKYSVDQTALVKTATGQN VWYRIKIGKNKSWIEGVNVATFPEKVAKVDFTANKVISSAAKANYLYTDFSASGQFMKHY KLAQVKLTVGTKVKVDKMGYRINDKSIWYRIACPGSDAKYWVSSKFLS >gi|238617813|gb|GG669608.1| GENE 570 590405 - 590734 227 109 aa, chain - ## HITS:1 COG:lin1179 KEGG:ns NR:ns ## COG: lin1179 COG1705 # Protein_GI_number: 16800248 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 28 97 29 98 328 65 41.0 2e-11 MVALVISASAIFALAFPGHCTYLTAQASSATSFISDYQGDVKKAAAKYNLYGSVMMAQAA LESGWGQSQLTQQANNFFGIKGAYNGQSVSMPTVEYNSNGQMENTTASN >gi|238617813|gb|GG669608.1| GENE 571 591152 - 592969 1851 605 aa, chain - ## HITS:1 COG:SP0266 KEGG:ns NR:ns ## COG: SP0266 COG0449 # Protein_GI_number: 15900200 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 605 1 602 602 683 59.0 0 MCGIVGVTGNDNAVSILLEGLEKLEYRGYDSAGIYVNDLNGKDYLIKRKGRISELEAAVG PDVHGSVGIGHTRWATHGVVSEANAHPQFSEDHRFYLVHNGVIENYKELKSEYLSNTTFA SQTDTEVVVQLVDHFVQTEGLSTKQAFLKTLSLLKGSSYAFLLIDSTDPETLYVAKNKSP LLIGLGDGCNVVCSDAPAMLNVTHDFLELHDGEVVTVKPDSVEIEDADHNKVERKPFHVD MDASETDKGPYPYYMLKEIDEQPNVMRKLAALYTQESGKPNIDDNLIDALNDADRIYIVG AGTSYHAGLVGKKLFEKLAHVPTEVHIASEFAYDDPLLSKKPFFIFLSQSGETADSREVL VNVNAHDYKSLTITNVENSTLFREATYTMLLHAGPEISVASTKAYTAQIAVEAILAKALG ETKEQTIAEDFDIRQQLGLVATGMQAIIDEKDIIEDLAKKYFVPAPRAFYIGRGIDQTVS LEAALKLKEISYVQAEGFASGELKHGTIALIEEGTPVVGIITQEKTANLTRSNLQETMSR GASTFTIVRSGLALEDDTITIPDVDEMITPLLSVVPAQLIAYFTSLNKGLDVDRPRNLAK SVTVE >gi|238617813|gb|GG669608.1| GENE 572 593202 - 594551 1259 449 aa, chain - ## HITS:1 COG:BS_ybbT KEGG:ns NR:ns ## COG: BS_ybbT COG1109 # Protein_GI_number: 16077245 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Bacillus subtilis # 2 449 3 448 448 575 63.0 1e-164 MKYFGTDGVRGIANKELTPELAFQCGRAGGYVLTHHSERKQPQVLVARDTRISGQMLQEA LIAGLLSVGIEVLNLGIITTPGVAYLVRNQGADAGVMITASHNPVEYNGIKFFGADGYKL SDEMEEEIEAILERQEDILPRPAAEGLGVVGDYFEGSQKYIHFLEQTISEDLSGIKVCVD SANGSTSKLVTTLYADLGIDFETLATTPDGLNINDHVGSTHPENLQKMVVEKGVQAGIAF DGDGDRCIAVDENGQLVDGDAIMYICGKYMAERGRLKKNTIVTTVMSNLGMYKAMERAGM TSVKTQVGDRYVVEKMNADGYNLGGEQSGHIVFLDFNTTGDGMLTSLQLLSVMKSTGKKL SELASEIKKYPQRLINVKVRDKKDGLQNEKIQAAIKEVEEEMHGDGRVLVRPSGTEPLLR VMTEAPTQDLVDEYTQKIADVVREEIGID >gi|238617813|gb|GG669608.1| GENE 573 594579 - 595544 672 321 aa, chain - ## HITS:1 COG:lin2224 KEGG:ns NR:ns ## COG: lin2224 COG4856 # Protein_GI_number: 16801289 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 68 317 62 310 452 119 31.0 1e-26 MKKFLLNNWAYRLLALVFAILLFLYVGSSQPSTTSSVKNNSNSTSLTSNRSTTISSQLSL TVNSNKYFVTGYPEKVQLHITGPSALVTTTANTQNFKVYADLSKLGVGTHRVRIQQEGLN NDLRYRFEPATIKVDIQPRKTVTYPLQVKYNKENIASGYQPGNASADVKNVKITGASDQI NRIKTVVAQLNVPQNAKSSINSQAIVEALDSKQNTVNVVITPATADVTLPITPGNSKELP IKLEPKGITDDNESFTLTSATKRVRVFGTQAQLKKLDSIKVEVDTSDVRTTKTKDVELDS KLNNVKGFDPDRISVKINRNN >gi|238617813|gb|GG669608.1| GENE 574 595547 - 596389 739 280 aa, chain - ## HITS:1 COG:BS_ybbP KEGG:ns NR:ns ## COG: BS_ybbP COG1624 # Protein_GI_number: 16077243 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 256 1 257 273 304 59.0 1e-82 MNWSDFFTLHNLTNLIDILVVWFIIYNLILMIRGTKAVQLLRGIVIIALIKIVSVYVGLS TVSWIMDQVINWGVIAMVIIFQPEIRRGLEHLGRGSLLVKGKKENEAAKKLIRALDRAIQ YMSKRRIGALITIQMNTGLEEYIETGIDVDADVSGELLINIFIPNTPLHDGAVIIKDNRV AVAAAYLPLSQSNLIPKELGTRHRAAVGISELTDALTIVISEETGEVSITQNNELLRGMT QDDYLKYLQNQLLTNTDQQDHRTFINTVVSFIDSHFRGGR >gi|238617813|gb|GG669608.1| GENE 575 596571 - 597245 289 224 aa, chain + ## HITS:1 COG:lin2252 KEGG:ns NR:ns ## COG: lin2252 COG4330 # Protein_GI_number: 16801316 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 19 205 16 201 213 96 34.0 3e-20 MSNLNKWVVRTCFIVWITLLYLYLRTPPFNFLVLNTFLAYIPIELSFHISIAKPKNAFIF WLFVIIWLLFYPNTPYLLTDLFHLSLLEPYGVNGLLRLNNVMWLKFSLLLISTLFSTLLG MWGLERIAEAVSDRLRVHNTIFKHLLIIGLTFVTSVGIFIGRFLRIHTIYLILTPEMFIR PLLNMWSKDAIVFIGLLTIVQLVFFYTLKLVVASSTSKQNSLNK >gi|238617813|gb|GG669608.1| GENE 576 597367 - 599493 1454 708 aa, chain - ## HITS:1 COG:BS_yvgP KEGG:ns NR:ns ## COG: BS_yvgP COG0025 # Protein_GI_number: 16080395 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Bacillus subtilis # 1 701 1 666 670 375 33.0 1e-103 MHILEAVILLMTLVVISNVIDHFIPAIPVSLIQVALGLGLALVLHISIPLETDWFLLLFV APLLFNDGRRFPKKELWKLRGPILANAIILVFLTTLLGGLLFHALIPAMPFSVSFALAAI LSPTDPVAVQSISQRANLPEAVLHIVSGESLINDASGLIAFKYAIAATVTGVFSIKAAAI DFFYISIMGFASGVIVIAIILMVENWLYRQGINDVIFSTVLRVTTPFVVYLITEELFHAS GVIAVVAAGIVFHFYGTAPDRSQPELTLVSEKTWDIIIYTLNGIVFLILGIELPIATTNV IENDKINTFAAFGISFVAWLILLAIRVIWIYGYQFVSGLRTRKRHGETKNQMHSFKAALL AGLSGVRGAVTMAGVLSIPVAVSTGQPFPSRSLALFVAASVIIISLVVATIMLPLISENK APLLTRANFAGDDDLDAAAADEDDGSHYISDDEAQLYIMKLAVQRIEEERRPNNQKEAYD LILDYQFLIRRLELKLQNKKEMDSIIADELALRRVALRGERSAIQRLFDAKEISRETFLV ANERLQRLERRMIHSIGKRTRMGRGSIQQMVRLKNKVSLWRIQRKSKDDITDELALVQRE QAKGAIKELSSYFARDDIDNNRFDSQSVYHLIIHYRNQIELAKEHSKRQIKDHTMQYQHL RIKALAAEREGVQVLLEQGHIDWAMAAHLRQYINYSETVLIMDYQNAD >gi|238617813|gb|GG669608.1| GENE 577 599561 - 600481 930 306 aa, chain - ## HITS:1 COG:L173881 KEGG:ns NR:ns ## COG: L173881 COG0812 # Protein_GI_number: 15673144 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Lactococcus lactis # 12 301 11 299 299 327 57.0 2e-89 MNDYKEIADIYPNIDILFNEPLSKYTHTLTGGPADILAFPESVRQTQELLAYANQYGIPV TVIGNASNLIVRDGGIHGLTMILTKMNKIRIRHHNTIVADAGAALIDVTKAAQAQSLTGV EFAAGIPGSVGGAIFMNAGAYGGDIDDVVTGAEVLTSDDKVIHLDFHQLDFGYRHCSVQD NHQIVLSATFSLTSGIAEKIQKQMNHLNQLRESKQPLELPSCGSVFKRPKGYFAGKLIHE AGLQGFQIGGAQVSTKHAGFIVNVDHATATDYLNVIAHVQKTVFDKFGVHLETEVRIIGE ESVKSL >gi|238617813|gb|GG669608.1| GENE 578 600669 - 601202 382 177 aa, chain + ## HITS:1 COG:CAC0738 KEGG:ns NR:ns ## COG: CAC0738 COG0847 # Protein_GI_number: 15894025 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Clostridium acetobutylicum # 1 165 1 164 306 130 42.0 1e-30 MNFAAMDFETANAKRASACSLALAIVRNNQVTHEFYSLINPETDFSWRNINVHGIHKQDV ANAPTFPELWDHIAPLFTANKLVVAHNASFDNSVLKRTLERYDLLLPHYLTLDTLKTSKQ FYPQMVNHKLNTVCDELHIELEHHHNALDDSVACANILLTQQQQFGNSVLRNFVKAI >gi|238617813|gb|GG669608.1| GENE 579 601247 - 601744 394 165 aa, chain - ## HITS:1 COG:FN0055 KEGG:ns NR:ns ## COG: FN0055 COG0454 # Protein_GI_number: 19703407 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Fusobacterium nucleatum # 1 142 2 144 168 65 27.0 5e-11 MSDEVSFRLAEPSDAQNVLTLLSRLQKESNTFMVDSDLGEITAELESQQIRLINQSYTNL MALAVLDNMPIGIVTVDGIDEQSGEIGVAVLREYQGFTIGTNLMDLAVDWARSYSRLNTL TLAVFENNQAAVHIYRKLGFSVASRKESKNQTILIMSLPVKDDKK >gi|238617813|gb|GG669608.1| GENE 580 601744 - 602217 289 157 aa, chain - ## HITS:1 COG:lin2184 KEGG:ns NR:ns ## COG: lin2184 COG0802 # Protein_GI_number: 16801249 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Listeria innocua # 1 156 1 153 153 159 53.0 3e-39 MKKTITVNSAEQTIEVGEKLAQFLQPRDLILLDGDLGAGKTTFTKGLGKGLGIERPIKSP TFTIIREYQSGRIPLYHMDVYRLEQGGGDDLGLDEYFNGDGVNVVEWSKFVSDEIPADYL RIIFKRDDAKGDNVRTMIFEPKGNRFEELTTKLLGEI >gi|238617813|gb|GG669608.1| GENE 581 602399 - 603376 1071 325 aa, chain - ## HITS:1 COG:L107797 KEGG:ns NR:ns ## COG: L107797 COG0280 # Protein_GI_number: 15673641 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Lactococcus lactis # 1 324 1 325 326 395 65.0 1e-110 MELFESLKQKINGKNISIVFPEGNDVRVLGAASRLAKDGLIKPVILGDKNEVEQVAGDAN IDLNDVQIIDYLNQPQDQIDAMVSAIVERRKGKTDEAKAREWLKDPNYFGTTLVYMDKID GMVSGANHPTGDTVRPALQIIKTKPGVKLISGSFIMQKGDQRYLFADCAINIDLDAAGLA EVAVESAKVAKTFDIDPKVALLSFSTKGSAKGDMVTKVQEATELAKQQAPDIPIDGELQF DAAFVPSVADKKAPGSNVAGHATVFIFPELQSGNIGYKIAQRFGGFEAIGPILQGLNKPV SDLSRGSNEEDIYKVSIITAAQTLS >gi|238617813|gb|GG669608.1| GENE 582 603413 - 604105 436 230 aa, chain - ## HITS:1 COG:BS_ung KEGG:ns NR:ns ## COG: BS_ung COG0692 # Protein_GI_number: 16080848 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Bacillus subtilis # 1 220 1 220 225 275 60.0 7e-74 MKPFIKNDWWDVLQPEFEKAYYQQLRQFLISEYKTQYIHPDMNHIFEAFQLTPFSKVKVV ILGQDPYHEPHQAHGLSFSVMPGVRIPPSLQNIYKELQSDLGIKPVHHGCLTSWAKQGVL LLNSVLTVRNGQAFSHKGKGWEQLTDAAIQKLSAREEPVVFILWGRAARNKIALIDTDTN VVLQSAHPSPLSANRGFFGSKPFSKTNEALIAMGEEPINWQLPEKVTQTP >gi|238617813|gb|GG669608.1| GENE 583 604215 - 604772 267 185 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1309 NR:ns ## KEGG: Lbuc_1309 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 170 1 170 189 263 69.0 3e-69 MSRKIQINLSELDHTRSCKIIDEYKDTKYLIVGKWGLVSDTFSVYSLTGDVLAEVRQQSL GVTPRFDLFCFNQFVGSSVLHFSMHYTTLFINGINWLVVGNQEKQSYIITHGRQKIASIK SYAQADQVIRLLNVENIEHEPMVALISAILNHPSLVHTSKLKLPSLDKYPKGAKPQWGEC HFLKK >gi|238617813|gb|GG669608.1| GENE 584 604892 - 605365 558 157 aa, chain - ## HITS:1 COG:SPy0504 KEGG:ns NR:ns ## COG: SPy0504 COG0691 # Protein_GI_number: 15674609 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Streptococcus pyogenes M1 GAS # 12 157 7 152 155 180 67.0 1e-45 MAKRKHKQNNDNLMAQNKKARHDYSILETYEAGIVLTGTEIKSIRDRRINLKDGFVQIRN GEAYMVNVHISEYAQGNQFNHDPLRNRKLLLHKKEIRKLGQATQDKGVTIVPLKVYLKSG FAKVLIGVAKGKREYDKRETIKRRDEQRTIERVMKRF >gi|238617813|gb|GG669608.1| GENE 585 605392 - 607734 1532 780 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 5 714 2 702 730 594 44 1e-168 MQDNDLKTEIENVLRTYPDNEFSVEKIADVLRYHGSESFKLIVQELAGLERDGIAVVTQD GKFQMNPDKQKLSGIFHANDKGFGFVAYDDIAPDAYIAPDNTMNALNGDTVEMEIVKPAE PGSDRGPEGKVTSITDRKYKRVVGPFSKSENRHYFGEVKLTDKKIAKYKFYINDIGLKPT PGEVITAQITEYPNADHPDYMVGIADEVIGAVDDPGIDILQIVYSHDIPAEFPEDVLQAA DAIPDHVTEEEKAGREDITDQDLVTIDGESSKDLDDAVTAWKLPNGNYHLGVHIADVSHY VKAGGLIDKEAYRRGTSVYLTDRVIPMLPRRLSNGICSLNEGELRLCMSCEMEIDQSGNV VKHRIHPSLMRSKARMTYTAVNKILESHDQKTMDEYNELVPMFETMGELHRILYKQRHAR GAIDFDDNEAEIIVDEKGHPIDIKLRIRGLAEKMIESFMLAANETVAKNYYEAHVPFIYR VHEQPDADRIKTFFETLTAFGINVKGDPKHITPKTLQNILKKVAGKPEEMMVSVMLLRSL KQARYADQSLGHFGLAAPFYTHFTSPIRRYPDTMVHRMIHYYEDNGINDETKKKYANVLD EIATTTSEYERRAVDAERDTDAMKKAEYMNDHIGEEFDGVVSSVMKFGLFIELPNTVEGL VHISRMSDDYYQYVEQFMALVGRRTHRTYKMGQPIRVKVINVDVEQSAVDFDVVNPEDTP TSNYLPKESYHRHNNDQRHSNNSNHGGGANIHFSNNNNNRNNHRSNKNSKSKKQYGRKKH >gi|238617813|gb|GG669608.1| GENE 586 607750 - 608496 663 248 aa, chain - ## HITS:1 COG:BH3554 KEGG:ns NR:ns ## COG: BH3554 COG1647 # Protein_GI_number: 15616116 # Func_class: R General function prediction only # Function: Esterase/lipase # Organism: Bacillus halodurans # 6 243 7 241 248 125 29.0 7e-29 MQAPNKSFYFEHGPKAIILMHAFASGPVDVRLLARRLERSNYSIYAPLLTGHGTPDFKDI ILQGSPEIWLEDTQQAIQFMKHQGFEDISIFGISLGGIFSARALELHPELVGGGSFGSPI VRKRQFSVHNTFMQMARANYLRYKTDPKVMADKLQWLDEHIDDLLKRISDFSAVVASDLP KIHQPYFIGQGMSDEIVNPESSQLVRDQLVNSKVSYHEYPNASHMITVNSAHQQLEIDLS NFLTKIYE >gi|238617813|gb|GG669608.1| GENE 587 608757 - 608963 116 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNASKPRGFCLANKSSAPPVKADIASLVFDGCINTAIVINTQSINSNVINKLYTLQPPTV KSAQYYSY >gi|238617813|gb|GG669608.1| GENE 588 609001 - 610542 986 513 aa, chain - ## HITS:1 COG:SPy1114 KEGG:ns NR:ns ## COG: SPy1114 COG0038 # Protein_GI_number: 15675095 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Streptococcus pyogenes M1 GAS # 13 495 14 498 510 294 45.0 3e-79 MKNVQVQGNYKLSQLKFIFNGLIIGILAGIVVSLFRWSIQHMMTIMQILYTGIFKKPILM LLCLAINLSVGLIIGMLLRQQPDIKGSGIPQVEGQLRDELDYPWWSVLWRKFVGGILAIG SGLYLGREGPSIQLGSTLGQGLAHLTKQVGFDRQVLISSGAAAGLSAAFNAPIASTLFVL EEIYHNFSTNIWIVSLTSAITSDMVATYVFGLKPVLYMKSQPLPLRYFIWVVILGIALGL LGRFYQLIILRMGGWYHRISKLPWYYQGIIPLLLIIGLGAYFPNLLGGGNYIILQLTGAG YSTLVLCAFFLIRFAFSMISYGSGLPGGIFLPILCLGGLIGAIIGNIAIQYGFISQTYLS SFIIMGMAGYFAAISKAPFTAILLITEMVGTLTHLLGLATVCLIAYSVLDALNGKPVYYA MLQQLLKVKRQFHLGRTAQIVTPIFAGAYMDGKIVSQIPWPNGSLLTKILRDGIEIVPSG HTMLRWGDTLYINVSTNKQHEITADLTKLSSES >gi|238617813|gb|GG669608.1| GENE 589 610581 - 612377 893 598 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227510631|ref|ZP_03940680.1| ## NR: gi|227510631|ref|ZP_03940680.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 598 1 598 598 937 100.0 0 MEVFILKKVILFSVGLMSLAAPIVSRAAESEQTSPREFNVYVREQIKDAKGHLSSRSILS SDGKKDASYKEKIDPKDENFKFIPKTLPGYKLLDGETAIKGSIKNGFTVTYVSDNHPEKL FQQVTSNDTSSNKTDFDRITENKKINSDNHSDVKTGEIVGNFKQSDLSNLNEQNAKKRPK NKTASDEQVNSGRKDDEDVTTQQVVKEEQSIGTPKEAEPSSTMNNLAGSNLSDDLKGQKP TDRHLVEKDFSKGSKQLLVDQSINSKKSTQLAKSKGLSSDTFGINEGQVQHEVNKISADK GTSHPTQSRFAKKVSREQNKMGLKSSHMIKVQGLDETGNDLFLKVIDRSKVADIFHENIE FYGYEWQSTTYDKQKDLYLLQYQRNDVKVTIVNVDENGHQLSKSTLSGKFGEKLHYVPIS IDGYRSIITDKQITLSTMTPANVKINYVKDNDKKMDLQVNHSELPVTNKERSLENTPKDV FEDTKNQNVVLNDQGVSKEVNDKAEDKKQNNQVTQKTGRSTRGRSKNKHVVLSKKATDPK SSAQQVSESSNSETTRSSKAGRSSNRLPQTGDADSKRGIIIGLGLLISLLVPKLKKWI >gi|238617813|gb|GG669608.1| GENE 590 612489 - 613808 1453 439 aa, chain - ## HITS:1 COG:SP1128 KEGG:ns NR:ns ## COG: SP1128 COG0148 # Protein_GI_number: 15900994 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Streptococcus pneumoniae TIGR4 # 1 430 1 434 434 602 69.0 1e-172 MSIISDIYAREVLDSRGNPTVEVELYTEAGAMGRGIVPSGASTGEHEAVELRDGDKDRYM GKGVTKAVDNVNNIIAKEIVGYDVTDQLAIDKAMIQLDGTPNKGKLGANAILGVSLAAAR AAADELEMPLYNYLGGFNAHLLPTPMLNVINGGKHANNKVDFQEFMIMPVGAPSIKEAIR WSSETFHNLKNLLNERGYSTAVGDEGGFAPDLKNNEEPFEILVEAIQRAGYKPGKDIAIA FDCAASEFYNTETKKYDLKGDGKSYTADEFVSLLEGIVDKYPVISIEDPLDENEWADWQM ATQRLGKKVQIVGDDLFVTNTDYLKKGIKMGVANAILIKLNQIGTLTETVEAVEMAREAG YTAIISHRSGETEDTTIADLVVALNAGQIKTGSMSRGERIAKYNQLMRIEDQLGDVSEYK GIHSFYNLSEQARDDIQSK >gi|238617813|gb|GG669608.1| GENE 591 613911 - 614669 654 252 aa, chain - ## HITS:1 COG:lin2551 KEGG:ns NR:ns ## COG: lin2551 COG0149 # Protein_GI_number: 16801613 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Listeria innocua # 1 246 1 246 251 254 48.0 1e-67 MRIPFVAGNWKMNLSVDESVKFLETIKGKLPDPKVTETCIAASPLFLESMIKHNADSPLI IAAENCFYEDEGAYTGETSPEALNEMGVTHVIIGHSERRKYFNETDDIINKKVHAAFRNH LTPIICCDETMSRRQSAERISWVVSQVTNALKSVTADQAKSIILAYEPSWAIGSGKTAST DEAEEGCYLIRQTIADLYSDDVANQVRVLYGGSVNDNNADDILAQTDIDGVLAGGASLKA DSFLKLANFLQK >gi|238617813|gb|GG669608.1| GENE 592 615015 - 616229 1174 404 aa, chain - ## HITS:1 COG:lin2552 KEGG:ns NR:ns ## COG: lin2552 COG0126 # Protein_GI_number: 16801614 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Listeria innocua # 1 404 1 396 396 491 65.0 1e-138 MAKLTVSDLDLEGKKVLMRVDFNVPIKDGVIGDDNRIQAALPTIKFVLDHKGKAILFSHL GRIKKEEDKKGLSLRPVAERLSNLLNKPVTFVPVTEGKQLEDAINKLENGNVLLVENTRY EDVVNGEYVKRESGNDPKLGEYWASLGDEYINDAFGTAHRQHASNVGIAEAMHKSGKPVA AGFLMEKEIQFLGEAVNNPQRPFVAILGGAKVSDKIGVIDNLLSKADKIIIGGGMTYTFY AAKGIKVGDSLVEKDKIDVAKSILEKGGDKIVLPVDNIVAKSFNNDAEHKVVEGDIDDGW MALDIGPKSIDDFEKVLKDAKTVVWNGPMGVFEMSNFAQGTLKVGEFLGSLTDATTIVGG GDSTAAVKQLGVADKLTHISTGGGASLQYLEGKTLPGIAAIDNK >gi|238617813|gb|GG669608.1| GENE 593 616335 - 617345 994 336 aa, chain - ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 4 336 3 333 333 424 64.0 1e-118 MTVKIGINGFGRIGRLAFKRIHELHSDEIEVAAINDLTTPSMLAYLLKYDSTHGRFPGDV SSTDKGIVVDGKEIPVYAEKDASNLPWVKNDGVDFVLECTGFYTSEEKSQAHIKAGAKRV LISAPAGQIKTVVPGVNLDTLNSNDVIVSAGSCTTNCLAPMAYFINKEFGIKVGTMTTVH AFTASQQILDGPKTKKKRNNRTASANTIPHSTGAAKAIGLVIPELAGKLQGHAQRVAVVD GSLTELIAILDKKVTADEVNEAIKKHTEGNEAFGYNADEIVSSDIIDDPHGSVFDPTQTE VTSAGDDQLVKTVAWYDNEWGFTCNMVRTLLKFASL >gi|238617813|gb|GG669608.1| GENE 594 617857 - 618768 729 303 aa, chain - ## HITS:1 COG:lin0752 KEGG:ns NR:ns ## COG: lin0752 COG0346 # Protein_GI_number: 16799826 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Listeria innocua # 4 291 6 290 296 244 40.0 1e-64 MQTHHISLLTRDAEQNVHFYTKVLGMRLVKNSVNQENIRIRHLFYGDYLGTPGTVVTFFV LPLLGRRTDGKHFFNNIKLAIPQGSTDYWHHRLDDQGIEVTEIGNGLKFNDPDNIEIKML ETPERLTDWRVVPNNGIPAENQIARFLGTELHVPDPTATASFFHDWLGITVKDNVVELEG HESIDLFKSQQPEVRTRFGRGSIDHIALQVPSEKVLFDFWDKAEKMNLNREEYADRGWFK SIYVRDPGDNRIELATTAPGFGLEESILTMGSQLSLPPKFMDQKQSIIDFYAKQGVDFHD VDD >gi|238617813|gb|GG669608.1| GENE 595 619016 - 619609 632 197 aa, chain + ## HITS:1 COG:lin2612 KEGG:ns NR:ns ## COG: lin2612 COG0740 # Protein_GI_number: 16801674 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Listeria innocua # 1 194 1 194 198 268 70.0 6e-72 MNLVPTVIEQSANGERAYDIYSRLLKDRIIMLSGPIEDDMANAIIAQLLFLDAQDSEKDI YLYINSPGGVITSGMAIFDTMNFVKADVQTIVMGMAASMASVLASSGAKGKRFALPHAQV LIHQPSGGAQGQQTEIEIAAEEILKARKMINELLAKNSGQPIEKINKDTERDNYLTAQEA VDYGLLDGIMTNSSEKK >gi|238617813|gb|GG669608.1| GENE 596 619927 - 621015 963 362 aa, chain + ## HITS:1 COG:ML2053 KEGG:ns NR:ns ## COG: ML2053 COG1064 # Protein_GI_number: 15828107 # Func_class: R General function prediction only # Function: Zn-dependent alcohol dehydrogenases # Organism: Mycobacterium leprae # 26 357 1 333 335 402 58.0 1e-112 MKNTMTSDKTKVIESTEKDETIPTEMKAWEVVKPGPLDANPSPLKFTTKPVPTPKRGEVL VHIIACGVCHTDLHVTEGDLPVHQEHVTPGHEIVGKVVKNGPGTSRFELGDRIGVPWLRW TCGVCEYCRAGKENLCPNSLYTGWDHDGGYAEYVTVPEGFAYRIPERFDSMTAAPLLCAG IIGYRAFERANVPAGGRLGLYGFGGSAHLTAQLAMAQGIEVHVLTRGKDARKFALELGAA SANGAYDLPPVKLDSAIIYAPVGDIVPKALEALKPGGTLAMAGIHSTDIPQLTYTEHIFH EKNLTSVESNTRRDGEEFLTLADRLNIHPEIHEYPLAKADEALKYVAAGDIKGACVLRVS EG >gi|238617813|gb|GG669608.1| GENE 597 621146 - 622084 738 312 aa, chain - ## HITS:1 COG:SA0722 KEGG:ns NR:ns ## COG: SA0722 COG1481 # Protein_GI_number: 15926444 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 306 1 306 314 333 59.0 2e-91 MSYASEVKKELTSLTVHRDNAKAELMALIRINGSLSISNHHFVLNVSSENPAIARRMYQL LSKFYGITGELSVRRKMKLKKNNLYILRVENKATEVLNDLGIFDGVQIVERVPQKLLTND AQIRSYLRGAFLASGSVNNPETSRYHLEIYSLYESHNEMIAEMMNKYHLKARSTQRRSGY ITYLKEAEKIADFLQLIGATSSMLKFEDIRIVRDMRNSVNRLVNCENANLNKVANAASKQ IENIKLIDDVMGINKLAPKLAQVARARLKHPEVSLKELGELVEGGPISKSGVNHRLRKIN EFASKLAEDQIA >gi|238617813|gb|GG669608.1| GENE 598 622097 - 623098 765 333 aa, chain - ## HITS:1 COG:L189428 KEGG:ns NR:ns ## COG: L189428 COG0391 # Protein_GI_number: 15672944 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 10 328 4 322 327 351 53.0 1e-96 MIDALHTHRPRIVVIGGGTGLPVILKNLKNRHVDITAIVTVADDGGSSGILRNYINVVPP GDIRNVMVALSDLPQLELDLFQYRFKSSDQFFAGHAIGNLIIAALSEKRGGIFDAVQILS RMMKVDGHIFPAANEPLELNAEFSDGSHMSGESEITAAGKLIRRVWVETNDDSHKPEAVD EVVDAIMNADQIVLGPGSLFTSILPNLMIENVGNALKRTTADIVYICNIMTQKGETENFT EADHVRVLNQHLGKNFINTVLVNMKEVPSEYIDYKKWNEVSQPVKHDFAGLRAMGCRVIS ADFLELKDRGAFHNGQEVAEELLNLIGRSTDEE >gi|238617813|gb|GG669608.1| GENE 599 623100 - 623987 655 295 aa, chain - ## HITS:1 COG:SP1566 KEGG:ns NR:ns ## COG: SP1566 COG1660 # Protein_GI_number: 15901409 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Streptococcus pneumoniae TIGR4 # 6 290 7 290 296 337 57.0 2e-92 MAMNNQFVIITGMSGAGKTVAMQSFEDLGYFCVDNMPPTLLPKFKELVRMERDINKIALV IDLRSQVFYDEIIGMFDDLKKNDDVDIIFLDSSDTKLVSRYKETRRAHPLARNGRVIDGI QKERELLENVKKAADLVVDTTNMSPRRLREEVFHNFESTDTTHTFHVEVMSFGFKYGLPL DADIVMDVRFLPNPYYDPKMRFKTGLDKSVFDYVMHSEGAKAFYDKLLDILNFTLPGYEK EGKASLTIAIGCTGGQHRSVAIAQRLSKDLQKQYPQYPVNITHRDIDRHKGKGEN >gi|238617813|gb|GG669608.1| GENE 600 624274 - 627153 1967 959 aa, chain - ## HITS:1 COG:SPy1825 KEGG:ns NR:ns ## COG: SPy1825 COG0178 # Protein_GI_number: 15675653 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Streptococcus pyogenes M1 GAS # 1 940 1 942 942 1380 71.0 0 MNDKIIIRGARAHNLQNVNVTIPKNKLVVMTGLSGSGKSSLAFDTLYAEGQRRYVESLSS YARQFLGQMDKPDVDSIEGLSPAISIDQKTTSKNPRSTVGTVTEINDYFRLLWARVGTPI CPNDGTVITSQSVDQMIAQIMQLPERTKMQIFSPIVRGRKGQHKKVFEKIKREGFVRVQV DGDTLDVDDSIELDKNKKHDINIVIDRIVIKDGINNRLSDSLEAALRLSGGYAIADFLGE RDQMIFSEHYSCPICGFTVGELEPRLFSFNSPIGACPDCDGLGMKLEVDPDLVVPDKTKT LNEGALAPWSPTGSKWYPNMLAQACKAEGVDMDTPFNKLPKKQRDFVLYGSKTKSLHFTL ESDFGGIRDVDGPFEGVINNVDRRYHNTSSDFTRNNLSGYMTELTCQTCHGYRLNRKALA VKVDGKNIAEISALDVSAELNFFENLKFGPQDTMIAKPIIKEIVDRLTFLRNVGLDYLTL SRSARTLSGGEAQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNT LIVVEHDEDTMRAADYIVDIGPGAGRDGGKVMAVGTPDQIAAAPQSITGQYLAGKRFIPV PEKRRTGNGKKVRVTGAAQNNLKDITVDFPLGELIVVTGVSGSGKSTLVNDILKKALAQK LNHNSERPGKYKSISGYKNIEKIVNIDQTPIGRTPRSNPATYTGVFDDIRDLFANTNDAK LRGFKKGRFSFNVKGGRCETCHGDGILKIEMNFLPDVYVPCEVCHGKRYNAETLEVEYKG KNISDVLDMTVEEALDFFSAIPKITRKLQTIKDVGLGYVSLGQPATTLSGGEAQRMKLAS ELYKKASGKNFYILDEPTTGLHSEDIRKLLGVLQKLVDNGNTVLIIEHNLDVVKNADHLI DLGPEGGDGGGQIVATGTPEQVAEVTKSYTGQYLKPVLERDKALTERAKQKSAAKAANH >gi|238617813|gb|GG669608.1| GENE 601 627169 - 629172 1331 667 aa, chain - ## HITS:1 COG:SP1238 KEGG:ns NR:ns ## COG: SP1238 COG0556 # Protein_GI_number: 15901100 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Streptococcus pneumoniae TIGR4 # 1 664 1 660 662 947 71.0 0 MIERENNHKFDLVSSYQPTGDQPQAIKKLVNGVDDGKKAQILLGATGTGKTFTISNVIAQ VNKPTLVLSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI NDEIDQLRHSATSSLLERNDVIVVASVSSIFGLGDPTEYRNHVVSLRVGQNIERDHLLRQ LVDIQYDRNDIDFQRGRFRVHGDVVEVFPASWDEHAFRIEFFGDEIDRIREVDTLTGEVI GDREHIAIFPATHFLTNDDVMKLALPEIQQEMDSQVSKFEKEGKLLEAQRLKQRTTYDIE MMREMGYTSGIENYSRFMDRRKPGQPPFTLLDFFPDDYLLVVDESHQTMPQIRGMYNGDK ARKEQLVKYGFRLPSALDNRPLRLPEFEKRVHQVIYMSATPGPYEMDQTKDVVQQIIRPT GLLDPTIDVRPIMGQMDDLVGEINKRVDKHERVFVTTLTKKMAEDLTDYLKDLGIKVKYL HSDIKTLERTQIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLI QTIGRASRNEHGAVIMYADSVTDSMKAAIDETARRRAIQIKYNKEHGITPKTIIKPVRDA ISITKSSSDAGKKDDFVESDFEQMSTKDQKNMLARLTDEMREAAKKLDFEQAATLRDTIM ELKAQIS >gi|238617813|gb|GG669608.1| GENE 602 629369 - 630016 537 215 aa, chain - ## HITS:1 COG:lin2634 KEGG:ns NR:ns ## COG: lin2634 COG1896 # Protein_GI_number: 16801696 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Listeria innocua # 1 207 1 207 215 249 59.0 3e-66 MGMHQYLESLAELELINRAPGYFKFEQHSVAAHSFKVAEIAQFLGDVEENAGETVNWRLL YEKALNHDYTERFIGDIKTPVKYATPVLRSMLADVDDKLTENFIQNEIPSEFQDAYRRRL SEGKDDTLEGRVLAVADKVDLLYESFGEIQKGNPEEVYPEMYKESLSTMLQYRDMHCVQY VVSKVIPEMLDENFTTQEKLRKLTRRVLKSENSGK >gi|238617813|gb|GG669608.1| GENE 603 630150 - 631100 576 316 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 5 306 2 306 306 226 42 1e-57 MAKNYDVVVIGAGPGGMTAALYASRANLSVAMIDRGIYGGQMNNTAAIENYPGFKSVMGP DLAQQMYDSSVNFGAEYVYGSVESIEDKGNVKIVKTDSEEIEAKVVIIATGSEYKKLGIP GEHEYGGKGVSYCAVCDGAFFRNKNVVVVGGGDSAIEEATYLAGIVDHVTVVHRRDQLRA QQVIQDRAFANDKIDFVWNTNVTEVLGDDKKVTAVKTVNNKTNEESEIKTSGVFIYVGLL PMTEPFANLDITDADGWIKTSNQMATSVPGIYAIGDVRQKDLRQITTAVGEGGIAGQQAF KYVEALSSKGQTEVSH >gi|238617813|gb|GG669608.1| GENE 604 631178 - 632080 848 300 aa, chain - ## HITS:1 COG:SP2092 KEGG:ns NR:ns ## COG: SP2092 COG1210 # Protein_GI_number: 15901907 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Streptococcus pneumoniae TIGR4 # 1 295 1 299 299 381 66.0 1e-106 MQKKVTKAVIPAAGLGTRFLPETKALPKEMLPIVDTPTIQFIVEEAKKSGIRDIVIVIGK GKRSIEDHFDANPELEQNLEERHKTDMLESIRKTNDMNIYFIRQSHPRGLGDAIYTARSF ISNEPFVVMLGDDVMEDKVPLTKQLMDSYQETGASTLAVKRVAHKDISKYGVIDPSEEVQ PGLFNVKKFVEKPSPEKAPSDLAIIGRYLLTPEIFGILENAKPDASGEIQLTSAIDTLNK TQRVFAHEFKGRRYDTGNKLSWLKTNIIFGLQHPEISSGLRTYLKDLGKQLSEEDMKQKK >gi|238617813|gb|GG669608.1| GENE 605 632119 - 633135 1039 338 aa, chain - ## HITS:1 COG:SPy0226 KEGG:ns NR:ns ## COG: SPy0226 COG0240 # Protein_GI_number: 15674414 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 1 338 1 336 338 381 58.0 1e-105 MTKEIAVLGAGSWGSVLASILDENGSNVKLWSYNKEQVKEFNESHTNTKYIKNFTFSDSI KAYNDLGEAIEDVDYILFVVPTQVTRSVAHQVAEILKERHQWVNIIHASKGIEEKTYLRL SQVLAQEIAPENRQSISVLSGPSQAEDVVTKDITLVTVASDNQKAAKEIQDLFMNHYFRV YTSDDVIGVEIGAALKNIIALGAGALYGLGYKDNAKAALMTRGLAEISRLGTSFGANPLT FIGLSGVGDIIVTATSTNSRNWRAGNELGRGESLDQVIKNMGMVIEGIATTRAAYQLSKK RGVEMPITSAIYHVLYDGADIKETINQLMTREGRSEIE >gi|238617813|gb|GG669608.1| GENE 606 633162 - 633998 551 278 aa, chain - ## HITS:1 COG:lin2625 KEGG:ns NR:ns ## COG: lin2625 COG0682 # Protein_GI_number: 16801687 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Listeria innocua # 9 270 8 267 277 288 57.0 1e-77 MFSFKSLALNPIAFHLGPIEVHWYGIIIACGVILAVYLAVREGKKRGIKPDDIYDMILWA LPAALICARLYYVIFQWSYYKDNPGEIIQIWDGGIAIYGSLIGAMIVVIWFCRRRFIPVW LMLDVAAPTVILAQSIGRWGNFMNQEAFGKITSLAYLQGLHLPHFIISQMYISGAYRQPT FLYESVWSFLGFLVLITLRHNPYLFKQGEVFLGYVMWYSFGRFFIEGMRTDSLMLFNLRV SQILSIFLFVGAIILAIYRRRDQVNPWYLEGNTLNVDF >gi|238617813|gb|GG669608.1| GENE 607 634010 - 635041 907 343 aa, chain - ## HITS:1 COG:lin2626 KEGG:ns NR:ns ## COG: lin2626 COG1493 # Protein_GI_number: 16801688 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Listeria innocua # 3 312 1 309 312 365 58.0 1e-101 MFLTESVSVADLVANTRLDVYYGKEYLESKSISTSDISRPGLELTGFFNYYPANRIQLLG ITEISYSKGMSHKNLLDVMKKMCQPQTPAFVISTQLDPPEELLEAAKLEHIPVLGSKLTT SRVLSNMTNYLEDKLAERKSLHGVLVDVYGLGILITGDSGIGKSETALELVKRGHRLIAD DRVEVYQQDEQTLVGTAPAILRHLLEIRGIGIIDVMTLFGTGAVRSQTKVDLIIHLANYT KDAKFDRLGNGTQNVHIFDVNVPKITIPVKTGRNLAIIIEAAAMNFRAQSMGYDATETFD RNLNNLIKANSASDAKEKAEEKNVEEKNKDLIGKTSKKPDSKK >gi|238617813|gb|GG669608.1| GENE 608 635135 - 635440 228 101 aa, chain - ## HITS:1 COG:MT1954 KEGG:ns NR:ns ## COG: MT1954 COG1950 # Protein_GI_number: 15841374 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Mycobacterium tuberculosis CDC1551 # 16 95 70 154 167 58 44.0 4e-09 MAISGFFPSSLYVSSVEIAVIAALVLGVLNWLVKPIIIILSLPINFLTLGLFGIVINGLM LELTSRIVGAGFQFSSFWTAMFIAILMSVVSVIIASYFDKS >gi|238617813|gb|GG669608.1| GENE 609 635485 - 635808 375 107 aa, chain - ## HITS:1 COG:BS_yvlC KEGG:ns NR:ns ## COG: BS_yvlC COG1983 # Protein_GI_number: 16080564 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Putative stress-responsive transcriptional regulator # Organism: Bacillus subtilis # 6 65 3 61 65 57 45.0 7e-09 MSDKKKLYRSSEDRWIAGVLGGISAYFDWNSTLVRILYIILMFTPGVGLVAILAYIVMIA IIPAENAPVSFFNQLKSTYKNQDSSKKSRKVIHGVEEEDVNHDKKRG >gi|238617813|gb|GG669608.1| GENE 610 635899 - 636555 667 218 aa, chain - ## HITS:1 COG:SPy1240 KEGG:ns NR:ns ## COG: SPy1240 COG0704 # Protein_GI_number: 15675200 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Streptococcus pyogenes M1 GAS # 5 217 6 217 217 154 40.0 9e-38 MGKVFDEEIVTLKADFMKLGALVGEAVANAGQAFIDHDIHKAETVVTNDHAINHLQIHIE KRSFEMIALYQPVTGDLREVVGILKAVTDLERAGDHARNIARSTLSIKGQPRIATVESII ASMSKDVSEQYDDSISSYGEADQDKAKETAKRYDKVIEKHYNDIAAPSYQAMAKDPEIVN SAIIYLNVAKDLSRVSDYSTNICEWTIYLATGKIIELN >gi|238617813|gb|GG669608.1| GENE 611 636567 - 637325 195 252 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 237 1 225 311 79 26 2e-13 MSEPIISANNLDLFYGDFQALHNIHLDFNPNQISALIGPSGCGKSTFLRCLNRMNDMIDG VTITGTVKFHEQNIYSPQTNLVDLRKEIGMVFQQPNPFPFSVYDNITYGLRIAGVKDKQK LDEIVERSLKQAAVWDEVKDHLYDNALSFSGGQQQRICIARVLAVSPSVILMDEPTSALD PISSANIENTLLELKKNYTIIIVTHNLQQASRISDKTAFFMEGRIIEYDDTTKMFVNPDE KQTEDYVSGRFG >gi|238617813|gb|GG669608.1| GENE 612 637337 - 638143 186 268 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 24 229 5 207 223 76 26 2e-12 MQFDTNNHERFIYHFDPEENDIDMQTKDLEIYYGKNLAMHQADIQFKKNTITALIGPSGS GKSTFLRSLNRMNDDVATVKGQILYKGVNINQPGIDVYEVRRRIGMVFQRPNPFAKSIYD NVTFALQRRGIHDKKVLDEVVETTLKQAAVWDQVKDSLHKSAQSLSGGQAQRVCIARALA VKPDVLLLDEPASALDPVSTSQLEQTLRELKPNYTIIIVTHNMQQAARLSDYTVFFNLGE AIEYNKTRKIFTRPKIKLTDDYVSGNFG >gi|238617813|gb|GG669608.1| GENE 613 638155 - 639045 518 296 aa, chain - ## HITS:1 COG:lin2640 KEGG:ns NR:ns ## COG: lin2640 COG0581 # Protein_GI_number: 16801702 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Listeria innocua # 4 294 3 293 294 347 61.0 2e-95 MNRVQKQSQIAIIVLKAIAGFVVLILAFLIGYIFITGLPNVSWKFLTSPAKAFSSGGGIG VQLFNSFYLLILAMLISLPIALGASIYLNEYAKDNWFTSMIRTSIEILSSLPSVVVGLFG FLLFVVHYNFGFSIISGALTLTIFNLPLLTRNIEESLASVADDQRQGGLGLGLSKYETII HIVVPAALPGIISGVILCSGRVFGEAAALIYTAGQSAPALNFGDWNPFNIDSPLSPLRPA ETLAVHIWKINSEGIMPDLTQVSSGSAAVLVLAILIFNLSARYIGRKVFEKMTSMN >gi|238617813|gb|GG669608.1| GENE 614 639042 - 639971 675 309 aa, chain - ## HITS:1 COG:SPy1244 KEGG:ns NR:ns ## COG: SPy1244 COG0573 # Protein_GI_number: 15675204 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 304 1 304 311 340 64.0 3e-93 MQDQKLAKQLFKKSKTARYERFGRFLCLCALLLIMAIVIGIILFIATKGMSTFLKDHISM KDFFTGTLWNPGTKTPDGHAAVGALPMILGSFLVTILAAVISTPFAIGTAVYMTEISPKR GAKILQPVTELLVGIPSVVYGFIGLSVVVPFVRNVFGGSGFGILSGTFVLFVMILPTIVS MTVDSLKSVPTYYRQASLALGATKWQTIWKVVLRAATPGILTAVVFGMARAFGEALAVQM VIGNASLMPHNLISPASTLTSVLTAGMGNTVMGSMQNDALWSLALVLLVMSLLFNLLVHF IGRKGAFSK >gi|238617813|gb|GG669608.1| GENE 615 639971 - 640858 886 295 aa, chain - ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 6 289 8 299 302 310 53.0 2e-84 MQKRRMIKWLLVAVVILAGIGSYTTRSKQATNQQSITAVGSTALQPLVEAASEEYSAEHS GIFINVQGGGSGTGLSQIESGAVQMGNSDLFAQEKAGINPQKLVDHKIAVVGVTPIVNKK VGIHRLTSKQLIAIFTGKVKNWRQVGGKNLPITLINRTQGSGTRVTFEEYGLNGRESAVA QEQDSSGTVRQIVSSTPGAISYVSFGYVNKAVQPITINGIKPTERNVMDNDWKIWSYEHI YTNGQPTGLTKKFLHYLQNDHIQKTLFNKLGYISVKDMRYQRTWQGKISKGSGVE >gi|238617813|gb|GG669608.1| GENE 616 641110 - 642519 883 469 aa, chain - ## HITS:1 COG:lin2643 KEGG:ns NR:ns ## COG: lin2643 COG0642 # Protein_GI_number: 16801705 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 45 457 173 588 591 196 33.0 1e-49 MSSQQEAMTLSKAYRQILIILGLSSVTFLMLFFGFARDNRDLIFLAFVLSFCLTVAIVTA TLDFRKNEKIRKQLEYMTKSIVSHQPVAPLFIRPGNPYKQIADQLTELQSRQQDESKTIK NSNTELVTILSSLPVGIMVIDSSQDVIFANHKMASMLQRNIMNQPHSYSQDIRNYQLLSL IERVFEDHESQQTEIRSVGDHSSTWDTSVVYNQLENDYHISVIMYDISDIINVKQMQIDF LRNASHELKTPVTAISGFAKTLLGGAMDDRKTLVEFLKIIDQQSTQLTSLIQDVLTISHI QNGTPHHSQALELKKFVDAKLTGYSSMAKVRDITLVDEVPQDAVVSVDSQMLTRILQNLV SNAIKYNRSGGSVTVKYSANDSFWQLHVVDTGIGIAQKDISRLFERFYRADDSRTKQKVS GTGLGLAIVKELVDSIGGVIHVKSQRGVGSTFTVEFPINDESQTAQVDK >gi|238617813|gb|GG669608.1| GENE 617 642485 - 643213 549 242 aa, chain - ## HITS:1 COG:BH3157 KEGG:ns NR:ns ## COG: BH3157 COG0745 # Protein_GI_number: 15615719 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 2 234 3 232 239 237 49.0 1e-62 MKKVLVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLMLPEMSG EEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRY EKSEPSSQQNAAPVKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQ VLSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIESDPKRPKYLKTIRGFGYEFSTGGDD AE >gi|238617813|gb|GG669608.1| GENE 618 643237 - 644397 758 386 aa, chain - ## HITS:1 COG:lin2645 KEGG:ns NR:ns ## COG: lin2645 COG0265 # Protein_GI_number: 16801707 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Listeria innocua # 11 378 15 385 391 139 23.0 9e-33 MKFLLAICFYVLQPMLWVGVVRAYLIHTNRVKRERRIFNSAIYEDFYEGRHFVRSGLMIG VIFSVVLGSLLMTSLQWLILYEGLCLIALVLIPWQFLGVTLIGAAGILSLLLPQMTQFNF IEKWFVNMEISSHQVNPVNYLAILAVVIFATGLFVRANAGRFDSPAISRNKRNNKVAVYP FNELTIFPLLLLLPGDWFKIGLGFLPVFQINHHSFVILIVPILIGLKLTVRKSTPREFFR NLGKLMMLVAGLGILMVIGAAFNHKLVLPAMIFLMICYYGVILIVKHRDRKQQVEYSEVM DGIRIIGIQPGTPAAKMNLSVGDVILTVNDIQVSNDDQFYRALSTSPTYCRFKVRDRHDQ LKMTESAIFKNSPHEIGVKTYTQSVE >gi|238617813|gb|GG669608.1| GENE 619 644607 - 645671 812 354 aa, chain - ## HITS:1 COG:lin2653 KEGG:ns NR:ns ## COG: lin2653 COG1186 # Protein_GI_number: 16801714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Listeria innocua # 23 345 1 323 327 411 62.0 1e-115 MALGGLFDFDALSESISINEAKMAEPGFWDDQQAAQKLIDETNQLKTKRDRFDTLTNELD DLKVTLELISEDPDSGMQDEFIGEADKLKKQLDRYQLGLLLNGKYDHNNAILEIHPGAGG TEAQDWGSMLLRMYTRWAETHDFKVDVLDYQVGEVAGINSVSILINGENAYGYLRSEKGV HRLVRISPFDSAGRRHTSFASVDVMPELDDDVSIKISPDELKVDVYRASGAGGQHVNKTS SAVRITHIPTGIVVASQAQRSQLQNRQTALNMLKSKLYELEEQKKAEEKAKIEGEQLDIG WGSQIRSYVFHPYSMVKDHRTNYETANVNGVMDGDLDPFINAYLQWQLSKDNPE >gi|238617813|gb|GG669608.1| GENE 620 645903 - 648266 2249 787 aa, chain - ## HITS:1 COG:SPy1805 KEGG:ns NR:ns ## COG: SPy1805 COG0653 # Protein_GI_number: 15675639 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Streptococcus pyogenes M1 GAS # 1 783 1 783 839 1031 67.0 0 MANLLKKWVESDKHELKRLSKIADEVGVYADEYRQLSDEELQAKTPAFKERYKNGETLDD LLPEAFAVAREGARRVLGLYPFHVQIMGGIVLHEGNIAEMKTGEGKTLTATMPVYLNALA GEGVHVVTVNEYLSQRDATEMGELYNWLGLTVGANLAEMTPDQKREAYACDITYSTNSEI GFDYLRDNMVAYKEEMVQRPLNFAIVDEVDSILIDEARTPLIISGQSTGTSELYQRTDRF AKTLHEKDDFKIDLETKTVSLTDKGIEKAEKYFNLKNLYDTDNTALTHHLDQALRANFIM LRDKDYVVQDGEVLIVDSFTGRIMQGRRFSDGLHQAIEAKEGVEIQEESKTMATITYQNM FRMYKKLAGMTGTAKTEAEEFREIYNMEVISVPTNKPVVRVDHPDVLYPTLDAKFDAVVK EIKQLHKKGQPMLIGTVAVETSEYLSKRLDEEQIPHVVLNAKNHAKEADIVMNAGQKGAV TIATNMAGRGTDIKLGPGVVELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGLSQFYLS LEDDLMRRFGSDKIKNFLEHLNVEGEDAVIRSKMITKQVESAQKRVEGNNYDSRKNVLQY DDVMRQQREVIYGERQEVIEENKDLKWVIIPMIERTVNRIVDLHTQGEKEDWDLQTILDF AISAMVSPDKISLEDFQNKTADEIKKMLMDLANSVYKEKQKQLYDESQMLEFEKVVILRV VDSHWTDHIDMMDQLRQSIGLRGYGQLNPLVEYQREGYKMFEEMIADIDYDATRLFMKAE IRQNMQR >gi|238617813|gb|GG669608.1| GENE 621 648529 - 649092 729 187 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|28377598|ref|NP_784490.1| ribosomal protein S30EA [Lactobacillus plantarum WCFS1] # 1 186 1 186 188 285 75 3e-75 MLIFNIRGENIEVTQAIRDYVEKRVSKLEKYFEKDMKNTAHVNLRVYPDKQAKVEVTIPL PFLTLRAEELSNDLYASVDLVTDKLERQIRKYKTKVNRKSREKGFKNLEFVPNDDQTTSD SDDNQSQFDVVRTKRLALKPMDNEEAILQMDMLGHDFFIYEDADTSNIDIVYRRNDGRYG LIETGEE >gi|238617813|gb|GG669608.1| GENE 622 649214 - 649630 256 138 aa, chain - ## HITS:1 COG:SP2207 KEGG:ns NR:ns ## COG: SP2207 COG1040 # Protein_GI_number: 15902014 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 3 138 88 220 220 88 41.0 4e-18 MKQYKFLGDYRLRNVFNRLIVSELKAMRCPVVVIPVNESTLQERGFNQVLGLCEGIQPVN CLRTRQGKKESRQSEKNRLQRLNVNQPFELIDHESELIREKTIVVVDDVYTTGTTIRHAA GLLYRAGARCVKGFTLAR >gi|238617813|gb|GG669608.1| GENE 623 649900 - 651021 399 373 aa, chain - ## HITS:1 COG:BS_comFA KEGG:ns NR:ns ## COG: BS_comFA COG4098 # Protein_GI_number: 16080600 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Bacillus subtilis # 1 373 90 460 463 271 39.0 1e-72 MGRMDTRHSLATFPEPNKFPVIESPMSWRGQLTDLQQQCANQIVKIFEKRQRHLLWAVTG AGKTEMLFPAISWAVSQGLRIGIASPRVDVCIELFPRIQSAFKKVSSILLHGKTKQHYQY SQITICTTHQLLRFYHAFDVMVIDEVDVFPFSGNDMLHYAVQNAIKPGGGILYLTATPDD VLMHKIKRKEISVSYLPIRYHGHLLPTVKIVKNQHLKRLVDQGRLPKSILQMINRLVKQK QRFLLFVPRIRDLTLVSSALEKANINCTYLTVYSADPQRLEKVTAMRSQAVDFLITTTIL ERGVTFPGIDVMVLKADDEVFSASALVQIAGRVGRNSARPTGQVILYCETKSKTIKSCDR QIKEMNRRAREIK >gi|238617813|gb|GG669608.1| GENE 624 651273 - 651941 371 222 aa, chain + ## HITS:1 COG:L98095 KEGG:ns NR:ns ## COG: L98095 COG1739 # Protein_GI_number: 15673073 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 5 210 2 207 209 184 45.0 8e-47 MTNPSLTIKKNGIHEIVIKKSRFICTLARINDEDHAKRLIAEVSKTNAKATHNCYAYLLG DDDHIQRESDNGEPSGTAGVPILEALKMNQLHNVLSVVTRYFGGIKLGAGGLIRAYSNAT SSTIDSVGIVKLVLKRELIITIDYNQFDPLKYYLSTNEVPIERTDYGAQVQITVPVAENG LKEFQEEVINLLSGNVTFKIGNDKIFEEPFSRDKREKTEHKK >gi|238617813|gb|GG669608.1| GENE 625 652048 - 653124 720 358 aa, chain - ## HITS:1 COG:L35751 KEGG:ns NR:ns ## COG: L35751 COG0472 # Protein_GI_number: 15673776 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Lactococcus lactis # 3 339 24 387 443 338 51.0 9e-93 MIISAVLTPFIRKLAFAVGAEDRPNKRRVNKIPMPTIGGLSIFIAYTFCTMVLLRDQFPT RILWGIYGGETIIILTGIIDDIFVLRPRQKVLGISIAALWVYFFAGVKMTTITLPFFTLH LGWMSLPVTWIWILAITNAVNLIDGLDGLATGVSIIALTTMGITGMFFLNVGNIFVSIMI FALVASCVGFLPYNFFPARIYLGDTGALFIGFMMSVFSLFGLKNATFITLLIPVMILGVP ITDTVYAIFRRLLNREPISHADKRHLHHRLMQIGLTHRQTVLVIYGIALIFSFISLLYPI STLWGSILLTIAVLIGLELFVETIGLVGEDRQPLLNGIKKLVKDTTSKENHGKEENKP >gi|238617813|gb|GG669608.1| GENE 626 653587 - 653829 226 80 aa, chain + ## HITS:1 COG:no KEGG:OEOE_0886 NR:ns ## KEGG: OEOE_0886 # Name: not_defined # Def: major facilitator superfamily permease # Organism: O.oeni # Pathway: not_defined # 1 77 1 77 461 109 79.0 4e-23 MENSSKGTTNRWLIIFGTILIQVSAGSFYAWSIFNNGFMMKSGGVVQVVDGVKKIVGGLP AGSVSFTFTLGMLCLSLLAS >gi|238617813|gb|GG669608.1| GENE 627 655718 - 655966 192 82 aa, chain + ## HITS:1 COG:FN0275 KEGG:ns NR:ns ## COG: FN0275 COG3464 # Protein_GI_number: 19703620 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 7 81 193 270 317 61 39.0 3e-10 MDALHELIDLLPFRTIHQYFYRFDQTAREWDRVIVTDMNYTYLKLAKIVFPNTILVVDKF HIINALNRVFNKTGVRLVCDIF >gi|238617813|gb|GG669608.1| GENE 628 656667 - 658508 1457 613 aa, chain - ## HITS:1 COG:lin2235 KEGG:ns NR:ns ## COG: lin2235 COG0531 # Protein_GI_number: 16801300 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 5 613 5 607 607 635 54.0 0 MWRYLKRLLIGKPLKTTDEGGQALTKFKALALLSSDALSSVAYGTEQITTILITLSAAAL MYQIWVAALVLVLLAAITLSYQQIIHAYPSGGGAYVVASTNWGERAGLVAGGSLLVDYML TVAVSTTSATEAITSAIPSLYSHQVLISCLIVVGIMLLNLRGIRESASFLTLPVYLFIVM ILVMIIYGGYNILSGHIQYHAAAHIGAPVEGMTLVLFFRAFSSGSSSLTGVEAISNAVPN FKKPKSHNASATLAIMATILACFFGGITYMSYYLGIVPNGHETVLSQIGVAVFGHGIIYY VLQLSTAMILAVAANTGFSAFPILAYNLAKDKFLPHAYLDKGDRLGYSNGIISLAVGAIV LIQIFGGRTNSLIPLYAVGVFIPFTLSQSGMIIHWYRHRGRSWQLKSVINFIGAFISLAL VTCLFLLRFPNVWPYLIVMPILLRIFYKINRHYKRVAEQLRVVEEDTQITATHHYDGSTV IVLVGGVTRVTANAISYAQSIGDYVIAMHVSFDSNPEKEHKTSEEFKKEFPNVRFVDIHS SYRSIAQPTLRFCDVIAKRAADRNYSTTVLVPQFVPKHRWENLLHNQTSLRLRTILNSRQ NIIISTYNYHLRE >gi|238617813|gb|GG669608.1| GENE 629 658696 - 660312 1543 538 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 537 3 541 547 598 56 1e-169 MAKQVKFSEDARSAMLKGVDKLADTVKATIGPKGRNVVLEQTAGTPTITNDGVTIAKAIE LPDHFENMGAKLVSEVASKTNDVAGDGTTTATVLTQAIVNEGMKNVTAGANPVGIRRGIE TATKTAVDALHKMSHDVKTKDDIAQIASISSANPEVGKLIADAMEKVGHDGVITIEESRG VETSLDVVEGMQFDRGYMSQYMVTDNDKMEADLDNPYILVTDKKITNIQDILPLLQKIVE QGRSLLIIADDIGGEALPTLVLNKMRGTFNVVAVKAPGFGDRRKDQLQDIAMLTGATVIT DDLGLNLKDATLEQLGQANKINVTKDSTTIVDGSGSKDQISQRVSEIKTQIEKTTSDFDR DKLKERLAKLSGGVAVVRVGAATETELKEKKYRIEDALNATRAAVEEGFVPGGGTALINV IPEIAKLKADGDEATGINIVRRALEEPVRQIAENAGVEGSVIVEQLKDEKPGIGYNAANG KFEDMIDDGIVDPTKVTRSALQNAASVSALLLTTEAVVADEPQKDAPAAPMPQPGMGM >gi|238617813|gb|GG669608.1| GENE 630 660383 - 660700 336 105 aa, chain - ## HITS:1 COG:BS_groES KEGG:ns NR:ns ## COG: BS_groES COG0234 # Protein_GI_number: 16077669 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Bacillus subtilis # 11 104 14 107 108 99 57.0 1e-21 MLKIVVNGGTNVLKPLGDRVIIEREEEEEKNVGGIVLADNAKKKPQTGTIVAVGEGRVLD NGQTVAPVVKKGDKVMFDKYAGTEIEDNDKSYLVLHEKDIVAIVE >gi|238617813|gb|GG669608.1| GENE 631 661036 - 661668 508 210 aa, chain - ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 6 208 8 210 215 244 57.0 7e-65 MTAENIPRATAKRLPIYYRYLNILHDTGKSRISSTELAEAVQVDSATIRRDFSYFGALGK RGYGYDVDSLLSFFKQILNQEHLTNVALIGVGNLGHALLNFNFHKDGNVRISAAFDTDDT IINKIEDGVPVYPIQELAHQLQEQQIQVIILTVPSSAAQAVTDDAVAGGVKGILNFTPIR LSVPDDVLVQNVDLTNELQTLIYFIENFGK >gi|238617813|gb|GG669608.1| GENE 632 662033 - 663838 1427 601 aa, chain + ## HITS:1 COG:SP1114 KEGG:ns NR:ns ## COG: SP1114 COG0488 # Protein_GI_number: 15900981 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 597 48 633 633 567 51.0 1e-161 MIIGEQSIDGGQITTKKNLTIGYLAQDTGLDSDKGIYEEMSSVFAKLKEQETKIHELEAQ ISTLDPKSDRFHQISATYDTVRANFEQHNGYGYDAEIRGVLHGFGFDKDQYDKPINELSG GQKTQLALAKLLLEKPELLILDEPTNHLDVETITWLESYIQNYSGSLLIISHDRYFLDRI VNEVYDLANGTLRHYAGNYTQYTQKKQQEISLRWKEYEKQQAEISKLQTFVDKNIVRAST TKQAQARRKQLERMNRIEKPTSDGKSVRFTFSPKSKSGNNILKVTDAAVGYTKILSEPVN LDVKRNQAIAIVGPNGVGKSTLLKSILGIIPFLKGSAQFGTGVDTGYYDQEQASLHPSKT VLGEVWDDHPTTAEGDIRSVLGSFLFSGDDVAKMVHDLSGGEKARLLLTKLAMQHNNFLI LDEPTNHLDIDSREVLEKALNGFDGTILFVSHDRYFINKVASSVVELSQRGTTLYLGDYD YYVDKKDEQLAIKEHEQEKQGTAQLAAQATTSTTDKKNYEVNKQNQKEVRKLNREVTDLE SQLDELSKSKNNIENQMAQPEVFNDLDKASDLQKKLEMVDQEIKETESKWEQKSLQLEDI E >gi|238617813|gb|GG669608.1| GENE 633 663948 - 664982 697 344 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227425790|ref|ZP_03908856.1| SSU ribosomal protein S18P alanine acetyltransferase [Atopobium parvulum DSM 20469] # 2 334 476 816 832 273 44 1e-71 MAKDLILSFETSCDETSVAVIENGDTILSNIVATQIKSHQRFGGVVPEVASRHHIEQITS CINDALTQAKVTYSDLSAVAVTYGPGLVGALLIGVTAAKAVAWAHHLPLIPVNHLAGHIY AARLVEPIEFPAMALVVSGGHTELVYMPKENRFEIIGETRDDAAGEAYDKIGRVLGINYP AGKQVDEMAHKGHDTFHFPRAMDQDDNFDFSFSGLKSAFINTVHHADQIHETLNKDDLAA SFQQAVIDVLADKTKRALQDYPVKQLILGGGVAANKGLRNRLEKELQAFPKTSLELVPLS LCGDNAAMIGAAGEMLYRHRVFTNATLNADPSLEFEWIKEPATN >gi|238617813|gb|GG669608.1| GENE 634 664997 - 665572 332 191 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227877624|ref|ZP_03995677.1| ribosomal protein ala-acetyltransferase [Lactobacillus crispatus JV-V01] # 1 185 1 176 190 132 40 3e-29 MWKKFKEWFQQNFYNKQVQLRERYLDIKNHDVEINGTNYFLAKAMIPDIPEILGIERAVY GGQTPWDERAFRTELMRKSDRLYLVLRRNDWLVAFIGCSLNDHTKDCHITNVAVAPNFQN HGLGYFLVNIIIKKARQLKYDKVTLEVRVSNARAQKLYRDIGFVDNGLKKDYYFNDREDA LNMILDITKIG >gi|238617813|gb|GG669608.1| GENE 635 665556 - 666278 227 240 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 42 226 1 185 380 92 34 9e-47 MKILAIDTSNRPLSVAVLDNDHLLAETTLTTHRKHAEFLMPVIEDLIQKSDLLPNDLNRI VVASGPGSYTGIRMATTAAKTLASTLDIELVTVSSLLTLALNISEPRVLINPIFDARNQN MFTGLYQLKNGTMTSIISDQHTNINDWLAKLTDVNQPIMIVGDTAPFSEAFLKRFGDSLR VADELTAVPNAARLGLYGSQLSPVKDIDAVVPRYLRLTKAEADWQKLHPNEDTRNYVEKI >gi|238617813|gb|GG669608.1| GENE 636 666259 - 667053 586 264 aa, chain - ## HITS:1 COG:SP1408 KEGG:ns NR:ns ## COG: SP1408 COG3884 # Protein_GI_number: 15901262 # Func_class: I Lipid transport and metabolism # Function: Acyl-ACP thioesterase # Organism: Streptococcus pneumoniae TIGR4 # 6 250 5 241 245 153 31.0 4e-37 MPADQYSENHTISFYEGDVSYRITMTMLINILMLCSDHQNAKLGVAQQELIDKYGVGWVV TQYSIKINRLPQVEDTVKMTTRGTSYNRFFAYREFWVHDDQGNELVKVDSIWVLMDERAR KITEIPQTIIEPYQSEKVRRVPRLPRPSRIADSAEVSSKKYQVRASDIDFNGHVNNAHYL EWMTDVLPLDFLVSHVPEQIDIRFENEVKYGNWVTSSVAVESKDSDKIKTVHEIFSNDVL SSSATFLWKKNDVKGHEKNENSSN >gi|238617813|gb|GG669608.1| GENE 637 667189 - 667986 422 265 aa, chain - ## HITS:1 COG:lin0210 KEGG:ns NR:ns ## COG: lin0210 COG0313 # Protein_GI_number: 16799287 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Listeria innocua # 1 265 29 293 293 262 50.0 4e-70 MTFRAVSVMKQVDLIAAEDTRNTQKLLNHFEIETKQISFHEHNTVQRIPELIDKLKKGIS IAQVSDAGMPSISDPGHELVVACIKSEITVVPLPGANAGITALIASGVSPQPFYFYGFLS RKPKEQRDELAKLVNRQETLIFYEAPHRLLKTLKSLQNSFGGLRAASLCRELTKKHEEFI RGTLDQVIEWANSTTIRGEFVIIVSGNAQPLEENKTDNLMENLSLTQQVDIYIKDGLSVN ESIKKVAKAHNLRKQVVYNEYHGIK >gi|238617813|gb|GG669608.1| GENE 638 668078 - 668410 220 110 aa, chain - ## HITS:1 COG:BH0046 KEGG:ns NR:ns ## COG: BH0046 COG4467 # Protein_GI_number: 15612609 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 105 1 113 116 73 34.0 6e-14 MDSQNLYDELKEMDSHLGATAAEFSHLHESLIELMEKNAELEIENQHLRDRINQITEKVG NNSPELSKSRKNLEKLYNEGFHVCSSYYGKRRENGEDCIFCTEIIYGRRD >gi|238617813|gb|GG669608.1| GENE 639 668433 - 669443 689 336 aa, chain - ## HITS:1 COG:BS_holB KEGG:ns NR:ns ## COG: BS_holB COG0470 # Protein_GI_number: 16077099 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Bacillus subtilis # 13 330 12 326 329 184 32.0 2e-46 MSDNIASDAKIKQPKLFEQFMRLVDRNELSHAYLFTGEDGAGQNAVAMGVAMRLFCTNVK DGYPCGKCAECTRIMNHDHPDVVITKPDGLSIKVDQIRHVKSEFTKSAMEGSKKAFIISD ADKMTTGAANSLLKFIEEPTGNVVSFLISQNRNLILPTIVSRTQVVEFPSIGKDVMNQEL RKSGILPSQINLLMSMTNSLSEIKRWQADNWFSSLQEVVSKWFGYLVKGNLMAMPYIQMA LMPLITNKERQQVALSMMIGVFDETLEIKYGTLKKDTTKFPDIISETKQAAQEWSSDQLM TMLEELLNTRGSLMVNVNFQNVIESVTLKMLTIVKS >gi|238617813|gb|GG669608.1| GENE 640 669453 - 669779 327 108 aa, chain - ## HITS:1 COG:lin2840 KEGG:ns NR:ns ## COG: lin2840 COG3870 # Protein_GI_number: 16801900 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 108 1 109 109 115 50.0 3e-26 MKLVIAIVQDKDANKLRSVFVAHDIVATRFSTTGSFLRAGNTTYLVAVDDDKVDLTLQLI KETCSARQQFMTPPVSLNGDTAEHTFPIEVQVGGATVMILPIEQFHQF >gi|238617813|gb|GG669608.1| GENE 641 669782 - 670375 450 197 aa, chain - ## HITS:1 COG:L3846 KEGG:ns NR:ns ## COG: L3846 COG0125 # Protein_GI_number: 15672380 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Lactococcus lactis # 1 193 20 211 211 179 46.0 2e-45 MNEVVNQFQKQLGDHLIVTREPGGNKISEQIRRVILDRKNTEMDYRTEALLYAAARRQHL VETILPALQADKLVLCDRYVDSSVAYQGAGREIGMQAVARMNEFATEKILPYKTIYFDIP VEVGLNRIAKHRDSSKIDRLDVETTAFHKRVHQGYMKLIGEYNDRFIIIDATQPIEKVIQ DTTDVIHQIASEFFKES >gi|238617813|gb|GG669608.1| GENE 642 670624 - 670893 302 89 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1373 NR:ns ## KEGG: Lbuc_1373 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 2 89 1 88 88 114 72.0 8e-25 MVWFGGFKKQNIKAEYDQRLLDLINNLKEQWDHAAQTQTAVADSDIEMAQETALAKQKFF FIYKEARLRHIKNDHIQASVISYDHDDFQ >gi|238617813|gb|GG669608.1| GENE 643 670906 - 671505 542 199 aa, chain - ## HITS:1 COG:SPy1422 KEGG:ns NR:ns ## COG: SPy1422 COG0353 # Protein_GI_number: 15675339 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Streptococcus pyogenes M1 GAS # 1 199 1 198 198 283 67.0 1e-76 MQYPEPIAKLIDSYMKLPGIGNKTATRLAFYTVDMNKDDVKEFSHALLATKEDLHYCSIC GNLTDEDPCEICRDKTRDQTKILVVEQPKDIMVMEKVQEYHGLYHVLHGVLSPIEGKGPE DLNITSLIRRLQKNGEVKEVIVATNATPEGEATAMYLSKLIKPAGIRVTRLAHGLSVGTD IEYADEMTLFKAVQGRTEM >gi|238617813|gb|GG669608.1| GENE 644 671529 - 671840 484 103 aa, chain - ## HITS:1 COG:L122849 KEGG:ns NR:ns ## COG: L122849 COG0718 # Protein_GI_number: 15672102 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 5 101 2 98 99 80 45.0 5e-16 MMNGMNMNKMMKQMQKMQKQLKEEQDNLNKQEFTGSAPDDMVVVTFNGERIMTDIKIKPE AIDPDDPEMLSDLIVAAVNDAMKKIKDTTQSTMGKYAKGIPGM >gi|238617813|gb|GG669608.1| GENE 645 671864 - 673630 1503 588 aa, chain - ## HITS:1 COG:lin2852 KEGG:ns NR:ns ## COG: lin2852 COG2812 # Protein_GI_number: 16801912 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Listeria innocua # 1 587 1 579 579 509 44.0 1e-144 MSYQALYRVWRPQRFDEIVGQSIITQTLKNAILTKQISHAYLFTGPRGTGKTSAAKIFAK AVNCHYLEDGEPCNKCETCRAINEGSLSDVIEIDAASNNGVEEIRDIRDKVKYAPTKADY KVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQKFDFKRIRP EDILERMAYILKQKNIEYDDKALKLIAKAAEGGMRDALSILDQAMSYGDDKVTYENALQV TGSVTNELLTTYVEQVIKKDTKNALITVQKVLDNGKDASRFVEDLTSYCQDILLYQQDPQ IVEQLELGMVDDKFKALSDQISDEEIYQIINELNEIANSLRYTAHPDVYLQVLTVKITHL KQPQGVSTTTSVDNIDENGKIKALTDKVNELQREIEQLKKSGPADEASQSQPMVKPKPIE AKSGNARVELAKIYPILGKATRQSLNEFQQVWPDLMNALSVTQRAVMHVSKPVAASPDGV IVSFEYPIFFQKAQANRELCDALENNLDRIAVKAPKIVFVPDNQWPKIRKDYLASHKDEL KGKQNTDPKSQETSTEEEKIDPDSNDPKPIVKKAEELFGKDILDIKND >gi|238617813|gb|GG669608.1| GENE 646 673708 - 673962 72 84 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLNRPELPTKLALFWASLSKILICLSRQYTPQLKIISCVYDQTKSMNGVHSRHDSYSSNP NYKNLPAIFLCWESNSHKQEAQCR >gi|238617813|gb|GG669608.1| GENE 647 674069 - 674542 261 157 aa, chain - ## HITS:1 COG:lin2867 KEGG:ns NR:ns ## COG: lin2867 COG0590 # Protein_GI_number: 16801927 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Listeria innocua # 9 157 6 154 154 173 57.0 9e-44 MSQNKDEKFMKMALIEAQKAYLIGEVPIGAVITQDGQIIGRGHNLREHLNDGVAHAEIMA IEEACRYLRSWRLVDCELYVTIEPCLMCSGAIVNSRIDRVVFGARDKKAGAVRSLYKVLE DSRLNHNVEVLEGVLQPACSKIMKDFFKAARKRKKQK >gi|238617813|gb|GG669608.1| GENE 648 674565 - 675173 587 202 aa, chain - ## HITS:1 COG:lin0284 KEGG:ns NR:ns ## COG: lin0284 COG2813 # Protein_GI_number: 16799361 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Listeria innocua # 4 200 3 199 201 200 52.0 1e-51 MDKNQFYYSKHPDVKSEPITWEYALLGNNFVFTSDNGVFSKHRVDYGSRVLLENVDVENI PDGNILDMGTGYGPIGLAIAKIQPDRVVDMVDVNEIALALAEKNAQANGISNVRIFASNS YSNIKDNYAAIVTNPPVRAGKKVVDDMITGAVSHLKPNATLTVVLQKKQGAPSAKKLMTK VFGNCEIVKRDKGYYILRSVNE >gi|238617813|gb|GG669608.1| GENE 649 675383 - 675565 160 60 aa, chain + ## HITS:1 COG:SPy1374 KEGG:ns NR:ns ## COG: SPy1374 COG0695 # Protein_GI_number: 15675306 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Streptococcus pyogenes M1 GAS # 1 58 15 71 72 60 48.0 7e-10 MTKRYLAEHHVKFEEHNINEQPEYVDYLKDKGFLALPVVDVDGQQAFSGFRPDELQRIAG >gi|238617813|gb|GG669608.1| GENE 650 675665 - 677830 1486 721 aa, chain + ## HITS:1 COG:SP1179 KEGG:ns NR:ns ## COG: SP1179 COG0209 # Protein_GI_number: 15901044 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 721 1 719 719 1072 71.0 0 MSLHNLKDVTYFDLNNEINIPVDNQIPLQKDQQALQAFLKQNVTPNLMTFDSLQDRFDYL IENHYYEAGFIKKYPISFIEKLYQYLKDQDFHFKSFMAAYKFYAQYALKTNDNDKYLESF LDRVAANALFFADGDEQLAMNLADEIIHQRYQPATPSFLNAGRQNRGEFVSCFLIQSTDD MNTIGRTINSALQLSRIGGGVGINLSNLRAAGDPIKHIEGAASGVVPVMKLLEDSFSYSN QLGQRQGAGVVYLSVFHPDIISFLGAKKENADEKIRLKTLSLGVTVPDKYYELVKADADM YLFSPYDVEREYGVPFSYVDITKEYDHLVANDKIKKTKVKARDLETEISKLQQESGYPYI INIDTANRENPIDGRIVMSNLCSEILQVQTPSTVDNEQHYIKLGKDISCNLGSTNIANMM NATNFGHSVESMVRALTFVTDHSNIDVVPSIQNGNRESHSIGLGAMGLHSYFAKSHMHYG SPESIEFTSVYFMLLNYWSLVASNKIAKERHQTFDNFEKSKYADGTYFDKYLNHSYAPQS DKVKQLFQGITIPTNEDWVALKKAVMEDGLYHQNRLAVAPNGSISYINDTTASLHPIINR IEERQESKIGKIYYPAPYLSNDTMPYYTSAYDMDMRKVIDIYAAAQVHVDQGMALTLFMR STIPEGLYEWKNGRTDKMTTRDLNILRNYAHRKGIKSIYYIRTFTDDQQEVGSNQCESCV I >gi|238617813|gb|GG669608.1| GENE 651 677873 - 678829 850 318 aa, chain + ## HITS:1 COG:SPy1378 KEGG:ns NR:ns ## COG: SPy1378 COG0208 # Protein_GI_number: 15675308 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 317 1 316 319 469 73.0 1e-132 MTENYKAINWNAIDDQIDKATWEKLTEQFWLDTRIPLSNDLSDWRTLDQDHQWVVGHVFG GLTLLDTLQSQEGMASLRKDVQTPHETAVLNNIQFMESVHAKSYSSIFSTLNTPEQIDEI FDWSDTEEFLQNKALKIRDIYENNPDPLKKKIASVFLETFLFYSGFYTPLWYLGHNKIPN VAEIIKLILRDESVHGTYIGYKFQIGFNQLPKTKQEDLKNWLYDLLYKLYANEEKYTHLL YDQTGWTDDVLVFIRYNANKALMNLGQDPLFPDTAEDVNPVVMNGISTSTANHDFFSQVG NGYLLGNVESMSDSDYDI >gi|238617813|gb|GG669608.1| GENE 652 678958 - 679953 632 331 aa, chain - ## HITS:1 COG:SPy1170 KEGG:ns NR:ns ## COG: SPy1170 COG1052 # Protein_GI_number: 15675142 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 1 323 1 323 330 235 38.0 1e-61 MRFIVYNVRDDEIPFVEKWGKDHQVDVTSTTTTLNTETISEAQGFDGISCLQTIPYSREL FDSFHQLGIKYLALRNVGIDNIDMQAAKDNGVLITNVPAYSPESIAEFAVMMALYLSRKV GYMQQQLQDKHEFHFSSEFMGRLISEQTVGVIGTGRIGRHAIQLFRGLGAKVIAYDKYPL KSTNGEFEYVDHLEDIFGQSDIISLHMPATQDNFHLFNHEVFEAMKDNAILINTARGSIV NTGDLIFALESGEIAAAGVDTLENESADLQDSRSTKKITDSDLIKLSMMPNVILTPHSAF HTTESVKNMVTISLNNLKVMFTGGRPKDIVG >gi|238617813|gb|GG669608.1| GENE 653 680129 - 681595 1232 488 aa, chain - ## HITS:1 COG:SP1852 KEGG:ns NR:ns ## COG: SP1852 COG4468 # Protein_GI_number: 15901680 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 6 487 4 488 493 546 56.0 1e-155 MSESAVEQFVDLIIKSDSPYKDVDRIYVTNLVFRLIGDGFGDTTKNSSPVDLANELVQLA IKHGKIQDSITNREILEDQLMDLLTPIPSKVNEIFWNDYQQSPDKATDYFYQLSQNNDYI KTRAIAKNISYKAETDYGDLEITINLSKPEKDPKAIAAAGKKKATGYPVGPLAIENEGYL GRLGYAARSNHRVIRMMIGGQPWGFQYSPYAYFGEHAIFLNQKHVPMKINQQTFINLMDI IKQFPHYFVGSNADLPIVGGSLLAQDHYQGGRHNFPMMKAGLDRPIDLGIDGLKAGIVKW PMATIRLQSEDANKVVVAAAKIADTWKAYSDETVNIRAYTDGVRHHTVTPIAYKKGDQFT LDVVLRDNQTSDQYPDGIFHPHKDVQHIKKENIGLIEVMGRAILPARLKTEMKEVQNYLI GHDNQMADYHKSWADELKTRYDFTPENVEKIVDKEIGLVFARVLEDAGVYKWNDEGQHAF DHFIQKLK >gi|238617813|gb|GG669608.1| GENE 654 681601 - 682602 1067 333 aa, chain - ## HITS:1 COG:lin2620 KEGG:ns NR:ns ## COG: lin2620 COG1087 # Protein_GI_number: 16801682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Listeria innocua # 1 327 2 328 328 461 67.0 1e-130 MAILVLGGAGYIGSHTVDRLVEKGYDVAVVDNLVTGHRAAVNPKARFYEGDVRDKTFLSG VFDKEDIEGVIHFAAFSVVPESMEKPLKYFDNNTYGMISLLEVMHEHNVKKIVFSSTAAT YGEPKQIPIKETDPQVPTNPYGESKLAMEKIMHWSDVAYGIKFVALRYFNVAGAKPDGSI GEDHHPETHLVPIILQVAAGERDQLTIFGDDYDTKDGTNVRDYVHVVDLADAHILALKYL QAGRDSDAFNLGSSTGFSNKEMLEAARDVTGKPIPAKMGPRRAGDPSTLIAASDKARKVL GWDPQFDDVHEIIKTAWNWKETHPKGYDDRKGN >gi|238617813|gb|GG669608.1| GENE 655 682629 - 683795 1166 388 aa, chain - ## HITS:1 COG:SP1853 KEGG:ns NR:ns ## COG: SP1853 COG0153 # Protein_GI_number: 15901681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Streptococcus pneumoniae TIGR4 # 1 385 5 389 392 427 56.0 1e-119 MLSSDVKKVFNDKFGYDSSRVFFSPGRINLIGEYTDFNGGHVFPCAISMGIYGAYGARKD NKVRVFSANVADQGIIEFSLDDLAYSKADGWASYPKGMIAQIIGHGHKLNHGFDLAVNGN LPDAAGLSSSACIELLTAEIVNDVYEFNIDEVELVKYGQLVENSYLGLQTGIMDQFAIGM GKTNQAILLDTNTLDYEYVPVEMGDRVVVIMNTKKHRELQDSKYNERRAQCEEALKRLQA KLPIKTLGDLSESEFDENSYLINDDILIRRARHAVFENQRTLKAKDALVNNNLEEFGKLI NASHISLHYDFEVTGKELDTLAETAWKQPGVVGARMTGAGFGGCAIAIVDRDKVDAFKEN VGKVYEQEIGHPAEFYIAEISDGPKEIK >gi|238617813|gb|GG669608.1| GENE 656 684179 - 685207 885 342 aa, chain - ## HITS:1 COG:lin2251 KEGG:ns NR:ns ## COG: lin2251 COG2855 # Protein_GI_number: 16801315 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 6 341 5 331 335 200 38.0 3e-51 MKNYGVLRTKGFFIALVLTLICALMGNFLGSQPYLSLIGALVISLILGMVFQVFKRPIET SKEGIGFISNKFLRLGIILLGFKLNLIDLASAGVKTILLAVVVVTGTVSMTYFIARKFGV EKELAILSASGTGICGAAAVMGISPQIKVAESQQARQRENEVLAVAVVAILGTVFTLVEI GIKPLLHLTPTQFGVMTGASLHEIAHAVAAGSSGGPISLDTAIITKLSRVLMLAPAALII GGWYQKTSPLIAGQEKRHLPIPWFMAGFIIASVIGTFLPIGSATLALLVKAAYLFLGMAM AALGMSVNFRVIFQRGKNVFFAAFISSVILLMFTIVVSKTFF >gi|238617813|gb|GG669608.1| GENE 657 685275 - 686207 601 310 aa, chain + ## HITS:1 COG:PA3398 KEGG:ns NR:ns ## COG: PA3398 COG0583 # Protein_GI_number: 15598594 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Pseudomonas aeruginosa # 20 302 6 287 308 98 24.0 2e-20 MYNNNINNSYYGGDFIVLDRRYETFLTLAKTVSYTKTAQKLYITQPAVTQQIASLQKDLQ IELVRYERPNLIITSAGRELAKYIESVRIKSHQLLQHLQSPNDKRSLKFGATLSFNTIVE PNFIKHIAPKFTNIDCLVANTDQILTQIDNGQIEFGLVEGNFKLSDYDSIPIFKDDFIAV CNPQNPLANQKRIDLKACLKFPLLLREVGSGTRSILEDWLAMVNHSVSDFSKIITIGDMS TIISLLQTNMGISFMYRSLLTEKLSTHQLVQLPLTSFDITRTLSMVFQKQSYYETQYHQL ADDIKTILAK >gi|238617813|gb|GG669608.1| GENE 658 686531 - 686725 119 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227510699|ref|ZP_03940748.1| ## NR: gi|227510699|ref|ZP_03940748.1| hypothetical protein HMPREF0496_2862 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_2862 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 64 61 124 124 116 100.0 5e-25 MNQIAKDQSGRIIDKKSVVALSADSHGDQIVLGFTKNDNLIVQFRQSLWRIFHKGLSYQS NHKS >gi|238617813|gb|GG669608.1| GENE 659 686838 - 687044 66 68 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAGCRLTVGDSLGNCYLEFVMIPSKKTVSALKLALTVFCLLMIKLNLNALIRFGKCVKNA VTVMIDQR >gi|238617813|gb|GG669608.1| GENE 660 687026 - 689560 1777 844 aa, chain - ## HITS:1 COG:lin1803_2 KEGG:ns NR:ns ## COG: lin1803_2 COG2898 # Protein_GI_number: 16800871 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 238 828 1 588 613 505 43.0 1e-142 MTIIKLIFVFSVLIFVVRQLAKIVRQINGEEFKQILANQSDLSLLLMLVIGFVSILPMLI YDFSIVRFLPTKFSPWYIVKSGWVVNTFTNLLGFGGLLGASLRAHFYGKGASRKQILYAI SKVALFLISGLSLLCFVALIMIFGFGIGQTFSHYWIWLLGGAIYFPAVFVFTKLNQSDFF HDLSTKQELVMATGSLLEWSSALGFFVLVGYLMGLPIDFAAVVPIFVVANVAGVVSMIPG GLGSFDIFIIIGLGFIGVGRSDALVWILLYRTFYYLVPFVVGSALFVHDTGNKINTFLDN LPQILIRRFAQILLTIFMYFSGIMMLLFATVPNVVIVNRLYIRLFPYSIFFVSHIMNIIV AFLLIGLASGVWARTKRAFWPTVIVLIISVLNTWFNEAFTWRMVTLFLLILVLLWLSRKV LYRDRMANSWGVLLFNGSLFVITFIGYTLVGIAANPHTPLHFDKAYLFPSQAAWLVGFVG LVIALLVLFAVNRYLSADRPSWLYEPFDAERVRNVINKFGGNENSHLAFLRDKQLYFYQE DGQDQVFFMFRKTADKILIMGEPVGNKGKMVTAIDHFMAEADKQDYKLLFYEINQDLTMR LHESGFDFIKTGEDGLVNLNEFTLSGKRHRGERALMNKFNREGYQFELLQPPFDQGLIGK LKVISDEWLDNRPEKGFSLGFFDETYLNESPIAVMRDPNGEIVAFANLMPDGNHEITSID LMRSSSKAPSGIMDGILVNLYHYAHEEGYQYFDLGMSPLSNVGTSRFSFTQERIVHLIYE YGYHLYSFEGLRSYKNKYVDEWKPKYIAYYRGNSLAFSVLQILPVVNKPQKRTRIGLFKW LVAD >gi|238617813|gb|GG669608.1| GENE 661 690027 - 690131 90 34 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQNDIPQILSPVKGVFSFYSLPYLDNWFSLSPPL >gi|238617813|gb|GG669608.1| GENE 662 690126 - 691334 656 402 aa, chain + ## HITS:1 COG:no KEGG:LVIS_2125 NR:ns ## KEGG: LVIS_2125 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 78 402 113 430 430 338 64.0 3e-91 MHQNNKKGYTFIPKYIIIFVTILLTGGLLSACGNGQGNRSSKDHSSKVTAISKESDNSDS SHKQAESNSTSSNTQHLSAISQKLVTATDKESAGPTSNYYWVNGKAHITGFSHLKAGDYR FTNDNQGRSATARAVLTYAEYQSSKGSRQGEPLAPPAWPSSNPKVAINYSLTGRTYHGYL YNRSHSIADSLLGSKSYTSEYNFTTGTRPQNVGADQSGGMRYAEETAENYWNNYPGTKNT IDYETTPVYKGNENIPRGSIVNIKSSDDVLNTEIVVINSVEGIKINYNDGSSNAKPITSP NSRTKKNHSSHSNGDYHGNSARTSKRQTTNSQTTTGATSQATNKTTKEGQWTVAAAGMVF VSDSQKYYSRVTNPTNYQYVSETQATANGATRAARGNQYARP >gi|238617813|gb|GG669608.1| GENE 663 691561 - 691926 586 121 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227510703|ref|ZP_03940752.1| ribosomal protein L7/L12 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 121 1 121 121 230 100 1e-58 MAFDKDNIIDQLKDASISDLNDLVKSIEDEFGVSAAAPVAAAGAAGGEAATKDSYDVELT ESGDQKVKAIKAVREITGLGLKDAKGLVDKVPSTIKEGVSEDEANKIKETLEAVGGVVTL K >gi|238617813|gb|GG669608.1| GENE 664 691966 - 692490 842 174 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227510704|ref|ZP_03940753.1| ribosomal protein L10 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 174 1 174 174 328 99 2e-88 MKLVSEQTVAVKAKKVEEATESIKAASSIVVVDYRGLTVAEVTDLRKQLRDEGVKMQVIK NKVLVRAAEKAGLDDLKDTFAGPTAVVFSSEDPVAGPKIVHNFAKSNDALELKGGVIDGK VATLDEINAYAALPSREELLSTLANILQAPVRNFAYGVKAIADKKQEDGDGDAA >gi|238617813|gb|GG669608.1| GENE 665 692679 - 693374 1158 231 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227510705|ref|ZP_03940754.1| 50S ribosomal protein L1 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 231 1 231 231 450 100 1e-125 MARKRGKQYKAALEQVDPAKVYPVQDAVELVKKIDYAKFDATVEIVFKLNVDTKQADQQL RGAVVLPNGTGKEQTVIVFAKGDKAKDAEAAGADFVGEADLVEKIQGGWLDFDVAIATPD MMAQVGRLGRVLGPKGLMPNPKTGTVTMDVAKAVQESKAGKVTYRTDRDGNVAVPVGKVS FDSEKLIGNLKTIEDVIVKARPASVRGTYVKNVSISSTFGPGVKVDLESFE >gi|238617813|gb|GG669608.1| GENE 666 693481 - 693906 698 141 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227510706|ref|ZP_03940755.1| 50S ribosomal protein L11 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 141 1 141 141 273 99 1e-71 MAKKVANIVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNARTADQAGMIIPVVITV YEDRSFDFITKTPPAAVLLKKAAGVQKGSGEPNTNKVAKVTKDQVKQIAETKMKDLNAAD VEAAMRMVEGTARSMGFTVED >gi|238617813|gb|GG669608.1| GENE 667 694034 - 694807 499 257 aa, chain - ## HITS:1 COG:lin0949 KEGG:ns NR:ns ## COG: lin0949 COG4814 # Protein_GI_number: 16800018 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Listeria innocua # 6 255 43 294 300 144 33.0 2e-34 MGRPFNNRKENQPFVDNVPTLFIPGYFGNRFSFGFLLKRLVRKYDANKSMVIIVKRNGRL KLYGNIKNQRCVIQVLFENKTSRPKQQAAWLNDICQMLETDYQIHHLNLVGHSMGCITIF WYLTHQHRKAAIMIDKVVAIAGPFNDSEIARNTPIVDSVPLTATGPIHRRPIFSALSANI STLPTTIKVLNIAGRISDRQKDDGQVSVNSAFSLRFLLKRPLGYYRELIIKGRRASHRLL HENQIVDESIVNFLWKQ >gi|238617813|gb|GG669608.1| GENE 668 694936 - 695487 670 183 aa, chain - ## HITS:1 COG:BS_nusG KEGG:ns NR:ns ## COG: BS_nusG COG0250 # Protein_GI_number: 16077169 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Bacillus subtilis # 6 180 2 175 177 210 62.0 1e-54 MVESAEKKWYVLHTYSGYENKVKMNLDSRKQSMGMADLIFRVVVPETEEHEVDKKGKDKV KMDKTFPGYVLVEMIMTDQAWYVVRNTPGVTGFVGSHGQGSKPTPLLPDEVDLVLKRIGM SSRHEDLDVNVGDSVKIVDGAFTGLNGKVTEIDNEKMRLKVNIEMFGRETSTELEFNQVD TEI >gi|238617813|gb|GG669608.1| GENE 669 695597 - 695734 81 45 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1466 NR:ns ## KEGG: Lbuc_1466 # Name: not_defined # Def: preprotein translocase subunit SecE # Organism: L.buchneri # Pathway: not_defined # 1 45 14 58 58 63 86.0 3e-09 MKVVTWPNVKQTRTDTTTVIGTSIIMAIFLGLVDLIVQWGLSFLA >gi|238617813|gb|GG669608.1| GENE 670 695799 - 695984 328 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227510710|ref|ZP_03940759.1| 50S ribosomal protein L33 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 61 1 61 61 130 100 9e-29 MLELLCLLGGATMAQKKVALACSVCGSRNYTIPANPNRTKRLELNKFCKYCGKYTLHKET R >gi|238617813|gb|GG669608.1| GENE 671 695986 - 696525 311 179 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1468 NR:ns ## KEGG: Lbuc_1468 # Name: not_defined # Def: RNA polymerase sigma factor, sigma-70 family # Organism: L.buchneri # Pathway: not_defined # 1 169 9 180 185 156 48.0 4e-37 MIRLVAKGDEQAFSRLFHKYYPIVRKLRRLCFIEGMDADDLDQEASLVLIRTAQRYRWER SVSFGTFYSHNLRNRIYDLIRKYKAKKRAPQQPVQRLDENRDFYSTTLSDPSAINPERLT LLKERLAQLYIKCSPLEKDVLYVILNLDTEKRIDARTFINAFERCKYKYISLDKLTELI >gi|238617813|gb|GG669608.1| GENE 672 696685 - 697221 531 178 aa, chain - ## HITS:1 COG:SPy1937 KEGG:ns NR:ns ## COG: SPy1937 COG3688 # Protein_GI_number: 15675740 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein containing a PIN domain # Organism: Streptococcus pyogenes M1 GAS # 1 172 1 170 172 123 41.0 2e-28 MKEDLLIVDAYNMIGNWPHLNKLKQADRLADARDQLLAELSEYKKYRDINMIVVFDAMYV PGNSKSFRKFDMEIVWTSKDQTADSYIEALSRKKQNRFTQVIVATSDQAEQWTIFAAGAL RIPARELLRDVQRAKQEVDMEARKMTDKSHALRQTPWNPKQLMALEKLRDNLTDKDNK >gi|238617813|gb|GG669608.1| GENE 673 697237 - 698004 627 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 7 252 5 249 255 246 48 2e-63 MKHDQENEEFVMGRHPVVAALKSDSPINKLFIQTGIKKDENIISEILKLARKKRLVISEV PKQKLDRLSVGQNHQGVVLSVAAFEYATVDDLFVNAKKQETEPFFVILDNIEDPHNLGSI IRTADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNLAATIKELKSRGMWVF GTDIEGTDYRRWDAKGSVAIIIGNEGKGISPLLKKQVDEMLTIPMVGDIQSLNASVAASV LIYQGFNSRHPLTIK >gi|238617813|gb|GG669608.1| GENE 674 697994 - 698404 286 136 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 7 128 12 133 141 114 47 6e-24 MADNFSQLNGIALAYMGDAAYEVFIRRHLIEDGIAKPTRLQHAATNYVSAKAQAALIDLM TKDKLLTDDEWDYFKRGRNAKSHTHAKNTDVITYRISTGFEAVFGYLCLSDQNDRMKQIA TWCIKQVESGNLKHEA >gi|238617813|gb|GG669608.1| GENE 675 698413 - 699819 1297 468 aa, chain - ## HITS:1 COG:BS_cysS KEGG:ns NR:ns ## COG: BS_cysS COG0215 # Protein_GI_number: 16077162 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Bacillus subtilis # 2 467 3 464 466 484 51.0 1e-136 MLQIFNTLTRKKEKFEPVTPGVVNMYVCGPTVYNYIHIGNARSAIAFDTIRRYLEYRGYK VNYVSNFTDVDDKMINAARENHTTVGAIAEKYINAFMQDTAALNISKDVTHPRATQNIPE IIAFVKNLEDQGYAYNVDGNVYFRARKFPTYGELPHINVDQLEVGASQHVEKGEFEQKED PIDFALWKKSKGDEISWDSPWGKGRPGWHIECSVMSMKYLGKTLDIHGGGEDLIFPHHEN ERAQSEAETHQTFVKYWMHNGFVTIGEDNEKMSKSLGNFITVHDLLKKIDGQVIRLLMST THYRRPIQYSDASVQEAKSNLKKLQTAFNNSTYRLHNAEAGSDPKTEQEVRQIVADFIDA MDDDFNVQNGIAAVYELAKFANMYSERDVVFQNSLQFIINTLKQLAAVFGIKLEQSELKD DEIWALIHERQQARANKDFIRSDEIREELKARGIVLEDTPQGTRFRKE >gi|238617813|gb|GG669608.1| GENE 676 699968 - 701458 1263 496 aa, chain - ## HITS:1 COG:SA0486 KEGG:ns NR:ns ## COG: SA0486 COG0008 # Protein_GI_number: 15926205 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Staphylococcus aureus N315 # 3 489 2 482 484 576 58.0 1e-164 MANNAIRVRYAPSPTGHLHIGNARTAIFNYLFARHNKGKFIIRIEDTDTKRNVADGEKSQ LENLKWLGLDWDEGPDVGGDFGPYRQSERNDIYKPLLQQLLDEGKAYESYRTEEQLTADR DAQKARGEMPHYEYEYEGMTDEQKQQAIADAKAKGLKPVIRFKVPKDHDYAWDDIVKGNV SFNSDTIGGDFVIAKRDGTPTYNFAVVVDDHMMKISHVFRGDDHVANTPKQLMIYEAFGW KAPMFGHMSLIISADTGKKLSKRDESVLQFIEQYRNLGYLPDAMFNFILLLGWSPVGEDE IFNKKQFIKMYDEKRLSKSPAKFDSKKLEWINNQYVKEADDSTIMDLALRQLIKGGNIPE NPDTKTIEWARQLISLYKREMSYMAQINDMASVFFQEPEEVSGDALDEISNDTAPVVLKE FLERIQKLNPFDSVEVFHTIKAIQKDTGIKGRKLWMPIRIAVTHEMHGPELPESVELVGR DKAIQHIKQTLKQINK >gi|238617813|gb|GG669608.1| GENE 677 701458 - 701652 86 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227510717|ref|ZP_03940766.1| ## NR: gi|227510717|ref|ZP_03940766.1| hypothetical protein HMPREF0496_2880 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_2880 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 64 1 64 64 88 100.0 1e-16 MYKRLFLKFISKFYQHFKFTMKCRKNKVAEACSLNNYTKLIFHYSKKRDGTKVLNLVHLF FYTK >gi|238617813|gb|GG669608.1| GENE 678 701657 - 702850 811 397 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764768|ref|ZP_02171822.1| ribosomal protein S5 [Bacillus selenitireducens MLS10] # 1 370 25 395 397 317 43 8e-85 GEMLKRKRIVRIVLTLAGAAIGASYFPLLWLIFQIAYGTLFNNVITNAILGAIIFYIISL LTGNYVLKAIDRVESRLTSQSPISLLFGTLGLIVGLVLAVLISIVFFKADTFFLNTMIPI ILMLVLGYFGFRLGNTQSDRWRKVFQFRRKTETPRTPGEKIIDKPVDDNYSHYKILDTNI LIDGRIYDVIKTGFVEGTLLVPKFVLYELQYIADSSDSVKRVRGRRGLDILNKLQKEKMI PIEIYEKDYEDIDEVDTKLIQLAKDVNGVIITNDYNLNKVIQFQHVKVLNINALATALRQ KILPGQQLNVMVVKNGTERQQGVAYLDDGTMVVVEDGRYFFNQHIDVVVTSAIQTDAGKM IFARPEHSTKNITDKIDDDNARKNSKQQNGKKNTAKK >gi|238617813|gb|GG669608.1| GENE 679 702869 - 704242 896 457 aa, chain - ## HITS:1 COG:BS_sms KEGG:ns NR:ns ## COG: BS_sms COG1066 # Protein_GI_number: 16077155 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Bacillus subtilis # 1 457 1 457 458 588 63.0 1e-168 MAKVKTQFVCQNCGYISPRYLGRCPNCNEWNTLVEETIAPKSNSTRTAGLRRTGVDEVKP EPLSSVTFQSEPRFKTGMEELNRVLGGGVVPGSLILIGGDPGIGKSTLMLQVSGQLSRSG KILYVSGEESASQIKMRADRLDVDSKQLYVFPETDMNVIKSTISDMKPDAVVIDSVQTMQ IPELQSATGSVAQIREVTADLMNIAKGQGITVFVVGHVTKGGAIAGPKILEHMVDTVLYF EGDLHHSYRILRTVKNRFGSTNELGVFEMMTDGLHEVTNPSEIFLEERLKDATGSAIVVS MEGTRPILVEIQALVTASVFGNATRTATGLDRNRVSLIMAVLEKRAGLLLQNQDAYLKAA GGVKLDEPAIDLAIAVSIASSYKNRGTSPTECYVGELGLTGEVRRVTRIEQRVSEAQKLG FKRVLVPANNLQGWTPPKGIDVVGVSTLSQALKLALG >gi|238617813|gb|GG669608.1| GENE 680 704350 - 704889 490 179 aa, chain - ## HITS:1 COG:L181168 KEGG:ns NR:ns ## COG: L181168 COG0756 # Protein_GI_number: 15672158 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Lactococcus lactis # 3 178 4 149 150 150 44.0 9e-37 MKRGFEIVSKYQDQKLTVPYRTTVNAAGYDFESAVDMTIPSIWKLNFLKVLWAIKHGKEA SPEKIDHAKQILKPFLIPTGIKAYMQPDEVLIIANRSSNPLKRGLAIPNGIGVIDADYYN NSGNEGEIFVQIINFGITDIKISKGERIAQGIFMPYLLADQDDHSKQETRHGGFGSSGR >gi|238617813|gb|GG669608.1| GENE 681 705035 - 705718 602 227 aa, chain + ## HITS:1 COG:L0045 KEGG:ns NR:ns ## COG: L0045 COG0120 # Protein_GI_number: 15674215 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Lactococcus lactis # 5 224 2 222 224 238 53.0 5e-63 MTKQDELKQLVGQEAVKFIEDGMIVGLGTGSTVKFMVDALGKRVADEQLSIVGVPTSQRT KEQAAGLGIPTKGLDEVDHIDLTIDGADQIDKNFQGIKGGGAAHLWEKIVAINSTKNMWI VDKSKMVDQLGSFPLPLEVIPYGSQQLFKRLEKRGFNPVFRMKNNNYVTTDSNNYLIDLH LHKIDNPNKLALTLDQMTGIVEHGLFLNIVNTVIVGEDDGPKVLQAR >gi|238617813|gb|GG669608.1| GENE 682 705970 - 707304 890 444 aa, chain + ## HITS:1 COG:SPy1651 KEGG:ns NR:ns ## COG: SPy1651 COG3579 # Protein_GI_number: 15675522 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pyogenes M1 GAS # 26 444 25 443 445 489 57.0 1e-138 MTSEIKLDQINKFQQNLDNRKDSKVVERAVSHQGILASSEDFTAESKMHPVFSIDLSTGN VADQKQSGRCWMFAALNTMRIRLMNTFKVSDGFELSQNYTNFWDKFEKSNYFLENVLKTA DQPLDSRKVSWLMTTPQQDGGQWDMLCALIEKYGIVPKYAMPETFNSEKSAQINKFLNLK LRHDAVALRELVADKASDTKIAETKETMLNEIYRMLVYALGEPTTSFNFEYRDKDNNYHI DKDITPQDFFKKYINLNLEDYVSLINSPTADKPFNKTYTIEMLGNVVNGRQVKHLNLEMS ELKKLAIKQLQNGESVWFGSDVGQSSNTKKGIMDTSLYVPDELFDADLSLSKAERLDYGE SLMTHAMVITGVDLVDGKPTKWKVENSWGEKVGTKGYFVMSDEWMDQFVYQFVINKAYLT TDQLTAQKQEPTVLNPWDPMGALA >gi|238617813|gb|GG669608.1| GENE 683 707489 - 708148 399 219 aa, chain - ## HITS:1 COG:SP1655 KEGG:ns NR:ns ## COG: SP1655 COG0588 # Protein_GI_number: 15901490 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Streptococcus pneumoniae TIGR4 # 2 216 8 228 230 218 47.0 8e-57 MRHGESQANRDNIFTGWSDVALTEKGISQAHQAGKIISKSDIQFNDVHTSFLKRAIITTN IVLNEINQNFIPEHKSWRLNERHYGGLRGKNKLAVKAKVGAKQLKVWRRSFSVVPPLLKN RDEDPRYDRYGVKIPRGESLQMAQERLIPYWVDQVAPRLLDGKNQLIVAHGSTLRALIKY LEDISDEEIPNVEVPNGKPIRYDFDDHLNIVHKQFMTDK >gi|238617813|gb|GG669608.1| GENE 684 708281 - 709324 593 347 aa, chain - ## HITS:1 COG:CAC1045 KEGG:ns NR:ns ## COG: CAC1045 COG0697 # Protein_GI_number: 15894332 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 1 314 1 312 317 185 40.0 1e-46 MRKSLLCVLISTLMFSSMEIVLKAVSNQFSPIQLNLIRFFIGGLVLLPLANHHLKRAGQK LMLLDWLVFALTGFLCIIVSMTLYQLAIVYGKPATIAVLFSCNPVFALIFAFLILHEKLN RVSMISLVISVIGLLIIVNPANLTNPVGTILGILSALTFGLYSIISRWGSILEGFDGITM TAYTFIAGSAELFVLVLLTHVRFISNAMNSISWMKQFANIPVLTNVNLAHFGVLFFIGVC VTGGGFAFYFLAMELDGVSIASLVFFIKPALAPILAMITIHEKMTTPMLVGIVVILIGSV VTFIGNRVSDKELKNSGVVREPLIENDKAVKNGKVQSDSSSERVEKI >gi|238617813|gb|GG669608.1| GENE 685 709335 - 710282 598 315 aa, chain - ## HITS:1 COG:CAC0366 KEGG:ns NR:ns ## COG: CAC0366 COG0679 # Protein_GI_number: 15893657 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Clostridium acetobutylicum # 11 313 7 300 301 95 25.0 1e-19 MGVFVSAISGVLIILIMIALGFILARNDWFDSKMTSMIARLVTQIALPAYMVSTIMEKFT AKKLLTTLPDILFPFVSMFLLYIVSIVIVKLFKIPKIHSGLFQSMFSNSNTVFVGLPVNM ALFHSPSLPFVLVYYMVNTTFFWTLGVYLIQKDGVGSEAAVNWKKTLKKVFSPPLLGFVV GVILVLLHAKLPNFIMQDLNYVGGLTIPLSMIFIGISINSVDLSNIHFDRSNFLILFGRF LLAPAVMSLLVIPTGMPTLMKQVFIMQSAMPIMTNAPVVSRLYHADSEYASIMVAETTLL SLIVIPILMVLVQKI >gi|238617813|gb|GG669608.1| GENE 686 710578 - 711690 1123 370 aa, chain + ## HITS:1 COG:SP1942 KEGG:ns NR:ns ## COG: SP1942 COG1316 # Protein_GI_number: 15901766 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 31 341 3 319 338 193 37.0 4e-49 MPSDKKRDFEPVYSRRADKKPHYKKKNRRRRRIVGWSIFAVLLLIVGGGLLWGYGAYKSA KKTFKQTYDSTNVQKERNVSSVIKQGKPLSILLLGTDTGALGRHDTGRTDTMIVATVNAK KKTIHLTSIARDTKVVVPGDTQPYEKINAAYTIGGAGTAVKTVQNLLDIPIDFYAIINMG GLEKMVNAVGGVDVKPPLTFNYGYAHVVKGHKTHLNGRQALDYSRMRDDDPLGDYGRQAR QRQVIKHLVMKGLGITSLPRYKSILSSLNGNLKTDMTFDDMIAVRAKYGDATHHIKSQTL QGQNAMIDGLSYQVVPDNELLRVSNDIRKTLGLSESSKLKTQQSQTDSTNGYSTGGYSST TGQSSAYNGY >gi|238617813|gb|GG669608.1| GENE 687 711757 - 712593 544 278 aa, chain - ## HITS:1 COG:STM1832 KEGG:ns NR:ns ## COG: STM1832 COG3716 # Protein_GI_number: 16765173 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 22 277 20 284 286 226 42.0 5e-59 MGQDFNNKQNKLNNQPKLQTKDFISIFWRSGFEQASWNYERMQNLGFAFILSPAIKRLYP EKKDRVAAMKRHLLFFNTSPIMQSLVTGVVLNLEEKKADGQPISANEITSVKTAMMGPLG GIGDPVWNGTIRPVLSALASSVVMSGFGIWGPILFFAAWNVLRLGFRYKAQQIGYRHGTD IIDLFGSGILKTVTRASAVFGMFMTGIFIAKWVKVDFDLTRIVIFRHIEWINSLFSAIAA LLLTISCIWLIRHRISPIWVILLLFLLGILGYAGGVFV >gi|238617813|gb|GG669608.1| GENE 688 712611 - 713411 651 266 aa, chain - ## HITS:1 COG:SPy1739 KEGG:ns NR:ns ## COG: SPy1739 COG3715 # Protein_GI_number: 15675588 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Streptococcus pyogenes M1 GAS # 1 240 4 246 269 162 40.0 7e-40 MGIISGVLVLLVAFFVGMDGILDEWQLFQPLVACTLVGAATGNISAGILLGATLQMITIG WMNVGAAVAPDIGLPAVISALLVCGPAAISIKHGIAFTIPFAVVGQLLNVFIRKRMAMLI HRADQAAEEGNLAWLDRIHLLSLGLQGLRVVVPTFLVMLISPGYLHSLTNRIPSVITNGI DVSIGMIAAVGFAIIMNMTIDKNLWWWLLAGFLLAALSGLNIFILTIVGIILTIIYIWFS NQHPNSSEDSSDIDEQDNFDKELDDL >gi|238617813|gb|GG669608.1| GENE 689 713423 - 713935 502 170 aa, chain - ## HITS:1 COG:SPy1738_2 KEGG:ns NR:ns ## COG: SPy1738_2 COG3444 # Protein_GI_number: 15675587 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pyogenes M1 GAS # 5 168 1 161 161 132 46.0 3e-31 MTMDIRLARVDSRLLHGQVATFWTRYVKPNRIMVVSDTVAKDNLRKTLITQVAPPGVRAN VVSVNKMIRAYFDARFDSFNTLLLTENVKDMLRLAEGGVNFSKIGINVGSIAYEDGMTMI TDAVAMNDDIAKQIQTLTNDFHLEVTAQKIPADKKINLVNLIKKKNFKVD >gi|238617813|gb|GG669608.1| GENE 690 713932 - 714351 307 139 aa, chain - ## HITS:1 COG:CAP0066_1 KEGG:ns NR:ns ## COG: CAP0066_1 COG2893 # Protein_GI_number: 15004770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Clostridium acetobutylicum # 1 101 1 102 157 97 49.0 5e-21 MISIIVASHGEFAEALIHTSEMIAGKQQNVAAVTLAPSDGIDALESKFKDVFKKLPRNDV LILTDLWGGSPFNAASKFVAEDPAHNALIAGVNLPLLLEAYMIKDQSLSKVVDHLTNVAA SSIKQFELPDQSDGEDDLL >gi|238617813|gb|GG669608.1| GENE 691 714450 - 715079 657 209 aa, chain - ## HITS:1 COG:lin2878 KEGG:ns NR:ns ## COG: lin2878 COG0546 # Protein_GI_number: 16801938 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Listeria innocua # 5 202 6 198 203 128 36.0 6e-30 MNDYIFDVDGTLIDTEKMYLLPLHKTLRANGYNVSYDDVKKVFGITASDALKILGVKDVE AVRKQWFDQIKNYKDDAKVYDGIIDSLAKLHADKNNRLAIATSKIEDEFHRDVTRFGLDD YFGAFVFSNEIKHGKPAPDLILKGIEKLNADPKATIYIGDTIYDLQAAHAAHVAFGLAGW RTKKTVDFANSDYYFETPADLLTIGSLAE >gi|238617813|gb|GG669608.1| GENE 692 715505 - 716383 985 292 aa, chain - ## HITS:1 COG:L0091 KEGG:ns NR:ns ## COG: L0091 COG0083 # Protein_GI_number: 15673142 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Lactococcus lactis # 6 290 3 292 296 223 43.0 3e-58 MAKIIIRVPATSANVGSGMDSVGIALHMYYTVIVEEETDHWKVNHALGSDIPTDERNLIV QTVLKVDPDIHPHQLTVISDVPIAHGLGSSTTAVVAGIKIANALGSLELPLDDQITMGAK FETHPENVAAAMLGGLAVSTFDGKHAIATKLELPDLYALVYIRPDGLSEAQSRKKLPQTI AYQTAVRASSKENVFIALVGQGKFDKAVSLIEDDQFHEPYRKDLVPEMAVIKETAHELGI YSTYLSGAGPTVATLGEKSALTQLRIELQEKNLNGSLRLLEVDEQGATVRGE >gi|238617813|gb|GG669608.1| GENE 693 716448 - 716756 82 102 aa, chain - ## HITS:1 COG:SP0909 KEGG:ns NR:ns ## COG: SP0909 COG3091 # Protein_GI_number: 15900790 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 8 99 56 145 149 84 47.0 5e-17 MDDHGTHDVLIGIIKHELCHYHLHLAGYSGKHNTKEFKQLLKAVGGSRYAPRLSENERRT PFRYFYRCPHCGLEYHRKRKIDLKRYVCGRCRSQLRLISASA >gi|238617813|gb|GG669608.1| GENE 694 716937 - 719105 365 722 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|87310993|ref|ZP_01093118.1| ribosomal protein S1-like RNA-binding domain protein [Blastopirellula marina DSM 3645] # 590 720 815 945 1043 145 48 4e-33 MDMTLAEKIQHDLPKIRVKQIAETLKMLEEGDTVPFIARYRKERTSNLDEVEIRDIQASA HRIQTLDKRKDEVIKIIEEQRALTPKLKKQIETATVLQQVEDLYLPYKQKRRTKATIAKE KGLLPLAKAATSFDNELDNKISQAIDPDKDLSDRETVISGIHEIIAEEVGDSANFRKWIR QNTNRYGVMTTKVKRGAKEKDETGTYQQYYDFTQSVREIPSYRTLAINRGEKEGILNVKI TVNETPINWYLTSNMIGKHSGLAADIVKDATLDGYQRFIGPAIEREIRKELSEKAAEHAI DIFGKNLYNLLMQAPLKGRIVMGFDPAYRTGCKLAVVDSNGKYLDKTVIYPHKPASEAKR KAAEGLFIDFINKNHVEMIAIGNGTASRESEQFVANAIKKIDAPVYYVIVNEAGASVYSA SRVAREEFPDFSVEQRSAVSIARRIQDPLAELVKIDPQAIGVGQYQHDVPQKQLGEKLDQ VVETAVNQVGVNLNTASPDLLVHISGLTKSTANNIVKFRNESGKFSNRTDLKKVPRLGPK AFEQSVGFLRIINGSNPLDNTDIHPESYSAATKLLSQYDLTINDLGKPIVAEKLVHLDLP VVAQTIDIGEETLRDIVKGIETPGRDLRDDMPTPLLKKDVLTMEDLKPGMKLQGTVRNVV DFGAFVDIGVKQDGLVHISKMSKTFVRDPSKLVSVGDIVTVWIDSVDVDRHRIQLSMIEP AD >gi|238617813|gb|GG669608.1| GENE 695 716937 - 719105 880 722 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|87310993|ref|ZP_01093118.1| ribosomal protein S1-like RNA-binding domain protein [Blastopirellula marina DSM 3645] # 194 645 315 769 1043 343 43 8e-93 MDMTLAEKIQHDLPKIRVKQIAETLKMLEEGDTVPFIARYRKERTSNLDEVEIRDIQASA HRIQTLDKRKDEVIKIIEEQRALTPKLKKQIETATVLQQVEDLYLPYKQKRRTKATIAKE KGLLPLAKAATSFDNELDNKISQAIDPDKDLSDRETVISGIHEIIAEEVGDSANFRKWIR QNTNRYGVMTTKVKRGAKEKDETGTYQQYYDFTQSVREIPSYRTLAINRGEKEGILNVKI TVNETPINWYLTSNMIGKHSGLAADIVKDATLDGYQRFIGPAIEREIRKELSEKAAEHAI DIFGKNLYNLLMQAPLKGRIVMGFDPAYRTGCKLAVVDSNGKYLDKTVIYPHKPASEAKR KAAEGLFIDFINKNHVEMIAIGNGTASRESEQFVANAIKKIDAPVYYVIVNEAGASVYSA SRVAREEFPDFSVEQRSAVSIARRIQDPLAELVKIDPQAIGVGQYQHDVPQKQLGEKLDQ VVETAVNQVGVNLNTASPDLLVHISGLTKSTANNIVKFRNESGKFSNRTDLKKVPRLGPK AFEQSVGFLRIINGSNPLDNTDIHPESYSAATKLLSQYDLTINDLGKPIVAEKLVHLDLP VVAQTIDIGEETLRDIVKGIETPGRDLRDDMPTPLLKKDVLTMEDLKPGMKLQGTVRNVV DFGAFVDIGVKQDGLVHISKMSKTFVRDPSKLVSVGDIVTVWIDSVDVDRHRIQLSMIEP AD >gi|238617813|gb|GG669608.1| GENE 696 719549 - 720094 337 181 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1491 NR:ns ## KEGG: Lbuc_1491 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 39 179 1 141 143 196 70.0 4e-49 MDCCDYWRIYDRCYLRSSKICTASFLQSTIIFRWGSFFLKPQDLRRYAKIVSDIIDSTQS NGEDLNADYEVLRKSIDDKTVSDLGSDRLTQIKTHFQSGTDKYQDNVNKLEQAPVPVKIL GKHKILVRAYADYADACQDMTDSLNPEDASIDAEKFNRSEKDQENHIAKVSDVTTRIMGM L >gi|238617813|gb|GG669608.1| GENE 697 720004 - 722670 2407 888 aa, chain - ## HITS:1 COG:SPy0623 KEGG:ns NR:ns ## COG: SPy0623 COG0474 # Protein_GI_number: 15674699 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pyogenes M1 GAS # 2 882 4 884 893 992 59.0 0 MKQQGKLFYQQSVNDVMQQMKANPEGLSDQSVEQRRAQFGYNRLQAKRRTTLFEKFIAQF KDLMIIILIIAAIIAGIAGEHIDAAIIIAVVILNAVFGVFQESKAENAIDSLKQMSAPMA TVLRNGRETTVKSEEIVPGDIVLLEAGDVVPADIRLIETNTLKIEEAALTGESVPVNKQV ETINDTDLPLGDRKNLGFMNSNVTSGRGVGVVTGTGMNTEVGKIAHMLNTTEEATTPLQE NLNKLGKVLTILILVIAVIVFGVGMWRGEESLINMLLTAISLAVAAIPEGLPAIVTVTLA IGTQQMARHRALIRKLQAVETLGSTDIIASDKTGTLTQNKMTVEKVYLDGQLKDYGETKQ LLSDKLPQIMILNNDTKFLEDGLGGDPTETALISFYLNHDLPVQEFIKKHQRLAEIPFDS ERKLMSTYNKVDDGQIMMTMKGAPDQLLARVTQILDHGQVRQITDEDKQKISETNHELAT QALRVLAFAYRMVDKVPTELTSDAQEHDMIFTGLIGMIDPERPEVAQAVAEAKTAGIKSV MITGDHQDTAQAIAKRLGILERSDHSTDKVINGAQLDELSDSQFENQVENIAVYARVAPE HKVRIVNAWQKKGKVVAMTGDGVNDAPALKAADIGVGMGITGTEVSKEASDMVLADDNFA TIVTAVKAGRKVFANIQKSLQYLLSANLGEVLTLFVMTMMGWEILAPVQILWINLVTDTF PAIALGVEPAEPGIMKRKPRGRSSNFLSGGIMSNILYQGFFEGFITLSVYAFAILNPVHS SEALIHADALTMAYATLGLIQLFHAFNSKTIHQSIFKVGLFKNKFFNWALLGSTLLLVLT IVVPGFNDMFHVTELGLSQWIVVIIGGFMIVVISEVVKYVQRHFFNQQ >gi|238617813|gb|GG669608.1| GENE 698 722860 - 723687 761 275 aa, chain - ## HITS:1 COG:STM1310 KEGG:ns NR:ns ## COG: STM1310 COG0171 # Protein_GI_number: 16764661 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Salmonella typhimurium LT2 # 5 275 4 274 275 367 67.0 1e-101 MREKQQEIIDALRVQPTIDPKVEIRRSVDFLKSYLKKYDFFKSLILGISGGQDSTLAGKL SQMAVSELRDETGDNRYQFIAVRLPYGVQADESDALAAIKYIQADQTFRVDIQSAVDAAV ESVEANDVNVSDFNKGNIKARQRMIAQYAIAGSTNGVVVGTDHAAEAVTGFYTKFGDGAA DITPLWRLDKRQGKQLLEVLDAPKHLYQKTPTADLEDNRPALPDEVALGVTYQDIDDYLE GREVSQKSAETIESWYRKTEHKRHTPINVYDTFWK >gi|238617813|gb|GG669608.1| GENE 699 723706 - 725163 1086 485 aa, chain - ## HITS:1 COG:L107468 KEGG:ns NR:ns ## COG: L107468 COG1488 # Protein_GI_number: 15673082 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Lactococcus lactis # 5 480 13 487 495 687 68.0 0 MPKFDNLTLHTDFYEINMMATYFEKHMQNRHAVFEVFFRKLPFGNGYAVFAGLQHVIEYI QGLNFTDDDIDYLQEVTNYPTDFLDYLRHFKFKGTIRSALEGDLVFANEPILQVEGTLCE CQLVETAILNMVNYQTLIATKASRIRTVVGDDPLMEFGTRRAQEVSAALWGTRAAIIGGF DSTSNVLAGKAFGIPISGTHAHSLVESFGNDYDAFKAYAQTHHDCVFLVDTYDTLKSGVP SAIKVADEMGDKIKFAGVRLDSGDMAYLSKRVRELLDNAGYEDTKIFASNDMDETTIASL KMQHAKIDVWGIGTKVITAFDQPALGAVYKMVSVEHSDGRMKDTIKISGNAEKVSTPGKK QVWRITDARDGKSEGDYITLSDEDPRQEKSIFMFHPNYTYINKTVENFNAQPLLQPIFEK GKLVYQVPDLKEISHYAKKQVASLWPEYKRELNPQKYPVDLSQKCWDNKRDIIEKVRNYV QQINF >gi|238617813|gb|GG669608.1| GENE 700 725285 - 726025 574 246 aa, chain + ## HITS:1 COG:lin2665 KEGG:ns NR:ns ## COG: lin2665 COG1922 # Protein_GI_number: 16801726 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Listeria innocua # 6 242 2 237 244 204 43.0 9e-53 MEKQSQKKPVSILGIPFENTNQEQFESLLKQRINHHKNTFVVTANPEIVMYARQNRPYET LIKRADYIIADGIGIIIGAKLLKDPLQERIAGYDLFVSLLEWGSQNHKSAYFVGAKTEVI NKLREVVAQKYAGLKIAGTHNGYFGDDRNIINDIRRTQPDMIFVATGYPKQEEFIDKNRQ TTDGLWMGIGGSFDVLTGTVKRAPGSWQKMHLEWLYRVVKEPSRISRLSVLPKYLIAVLK ERLSGN >gi|238617813|gb|GG669608.1| GENE 701 727439 - 728143 749 234 aa, chain - ## HITS:1 COG:SP1446 KEGG:ns NR:ns ## COG: SP1446 COG2188 # Protein_GI_number: 15901296 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 3 232 5 233 235 249 53.0 2e-66 MGLPIYIQIHNDIKRNIEAEKWKIGDRIPSERELSTEFGVSRMTLRQAIQTLVDEGILER RVGSGTFVANQKVQERMSGVTGFTDLMLAQGKKPSSKTISYHTMEPSLSEMEKLKITQDQ SVLRMERIRYGDNIPICFEVATVPENIVAGLEKSEVTSSLYRALEQKKNLSLGKAQQTVS AMLASERIAEYLDIKRGDAILRLRQITYLQDGRPFEYVRTQYVGDRFEFYLEKG >gi|238617813|gb|GG669608.1| GENE 702 728173 - 729291 659 372 aa, chain - ## HITS:1 COG:lin0955 KEGG:ns NR:ns ## COG: lin0955 COG1820 # Protein_GI_number: 16800024 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Listeria innocua # 2 372 3 374 377 344 47.0 1e-94 MSKVLTNGHIYAGRREIKCGFIRFSDKVNAIGSMQDFHLQRDDDVNDLKGKLVVPGFIDV HVHGGYGIDSMTGDSSHISQMVSKMKSEGVTALLLTTMTQSPSKISHAMETIREAALINP VIVGIHLEGPFVSKKFNGAQPIDQIQSVNVSDLSRWNQLSGGLVRLITYAPEINDHRSLE AYCNAHQIRISVGHSDATYKTLQQCQVDHITHLFNAQRGLHQREPGVVGFSMLSDMPVEL ICDGYHVVSPVVKLAYRIIGSDRLELVTDAMEAKGMVDGDYQLGGQHVLVTKNRAILGNG KLAGSVLKFDQAFRNVIQFTGCSIGDAVKMSSTNQAKEFNLKGKGSLEIGSDADINVFDN QLDLMATYSYGK >gi|238617813|gb|GG669608.1| GENE 703 729314 - 730114 622 266 aa, chain - ## HITS:1 COG:L135991 KEGG:ns NR:ns ## COG: L135991 COG0345 # Protein_GI_number: 15673866 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Lactococcus lactis # 3 260 4 258 262 185 40.0 1e-46 MKIGFIGVGAMAQAIIQGLLRAKFVPAKDILVHSAHQARYEQYADQYGLTAQKTNAELTQ NSDLVVLAVVPGIAADVLNEINGELKSNKTLISIVSGIGLNRLEELTDYNLPILRSLPNI NSEYGQGMTAIATNENLVGEQKKTAVSLFEATGEISELPEDQFAIFSAISGSAVAYVDFF IDCLSRAGVKYGFNKETATKVATQTALGSAQSLLASKQTPAEMIDKVCSPGGDTIAGILA MEQAGLLNSVIKGIDATIDKSTGNSK >gi|238617813|gb|GG669608.1| GENE 704 730271 - 730828 503 185 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0831 NR:ns ## KEGG: Lbuc_0831 # Name: not_defined # Def: VanZ family protein # Organism: L.buchneri # Pathway: not_defined # 1 176 1 176 185 209 63.0 6e-53 MVKWIPYFIDVTSVLIWLKIQSSQIAKLSRWQLTTILSAVIYVITVSYLTLAPTSYAFVG TQQVAPLMVGNVPVNLIPFWSTTSDFYQNVLMMLPMGVYIALLRPDFKAKHTVLLGLIVS VGIETLQFILDWSVGLSRWVDINDVLTNTFGVLVGWGLVISLQHTFLKRLIKKFTVDFSF IYHHK >gi|238617813|gb|GG669608.1| GENE 705 731487 - 731858 303 123 aa, chain + ## HITS:1 COG:lin0680 KEGG:ns NR:ns ## COG: lin0680 COG3152 # Protein_GI_number: 16799755 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 2 115 4 125 140 58 32.0 4e-09 MITSYKRFWKNIFNVSGTASRSDYWWPIIINYVLGIIAVIIISHVTGYSFDSIRNLKDLA VDSTVRTVGLIVWIATFTVKIRRLHDSDHVGWWILIDLVPLIGTIWFFILMVFPSKANRW DKR >gi|238617813|gb|GG669608.1| GENE 706 732677 - 733498 603 273 aa, chain - ## HITS:1 COG:SA2225 KEGG:ns NR:ns ## COG: SA2225 COG1409 # Protein_GI_number: 15928015 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Staphylococcus aureus N315 # 2 272 1 268 268 80 28.0 4e-15 MIRIAASSDNHLDLNKVPTDGIIHQQAQYLTENKTDYYLVAGDLFNDFHETVSYIQQLSG QLSSTQVLFIAGNHDMIRNVTYDQLENGHWPGYLNNHYFDIPETNYRIIGLNGWYDYSFA KNTGKTEAQFHQWKMAYWIDSLIKQPMSDPQREGIVIDELKKQLEMAQKAQKRVVLMTHF VPNQLFIRYTGDNRFWNMANAMLGSVKVGQLIDEYAVPIVIFGHIHDHMNPRKIGNTWYY NGAVGYHNHHHNEWQTNTFYSEWLKQLKTIQLF >gi|238617813|gb|GG669608.1| GENE 707 733563 - 735053 1352 496 aa, chain - ## HITS:1 COG:lin0564 KEGG:ns NR:ns ## COG: lin0564 COG3104 # Protein_GI_number: 16799639 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Listeria innocua # 14 496 6 492 492 463 50.0 1e-130 MQQQGQSDQEKRADTSFFGQPRGLSTLFFTEMWERFSYYGMRAILLYYMYWSVAKGGLGF EPGLAASIMSIYGSLVYLSSVVGGFISDRILGSRRTVFYGGILIMFGHIALSMPLGSIAL FVSIVLITLGTGLLKPNISEMVGDLYTEYDNRRDSGFTIFVFGINFGSFISPILVGYLGQ HVNFHLGFSLAAIGMFFGLLQYIRGGKKHLPSSSLYASDPLEPEDVKKLSVKVGLGVVVF ALILLLMNVMGALNIGNFITLLSVIAVATPIIYFIIIITSKKITSTERSRVIAYIPLFIA AAIFWAIEEQGSSVLALFAANQTNNSLFGFQIPASWYQSLNPFFIMLYTPFFAWLWIKLG KKQPSSPSKFSLGLMIAGLSYLFMVIPVALFGSSAKVSPFWLIGSWAIVEVAELLISPIG LSVTTKLAPKSFESQMMSMWFLADSAAQAVNSQIVKYYTPDNEVRYFTMVAIAAVVAGIL LAFLIKPIKKLMEGVN >gi|238617813|gb|GG669608.1| GENE 708 735257 - 735532 103 91 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1502 NR:ns ## KEGG: Lbuc_1502 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 88 13 100 102 73 46.0 2e-12 MLMYSGHAKKILAEILDQLSNSVEKQDHTENLSTAYNWLKKAHIEQNKIMQHAQQLQYSV LLTHAQDTLMNTETIYFIVKRFIPIILNSKK >gi|238617813|gb|GG669608.1| GENE 709 735569 - 735886 344 105 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_1503 NR:ns ## KEGG: Lbuc_1503 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 104 1 104 105 137 62.0 2e-31 MKNVLLICENGISSNFLLKSAKSFMEVYDAQFNLISADYTKADTYLDSNIDLVLIAPQAS YHDKEIKMIDGRAKVKTIPDDVYGWANGEKLVKFIMNEFTPAEAM >gi|238617813|gb|GG669608.1| GENE 710 736264 - 736884 540 206 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227513765|ref|ZP_03943814.1| ## NR: gi|227513765|ref|ZP_03943814.1| hypothetical protein HMPREF0497_2887 [Lactobacillus buchneri ATCC 11577] hypothetical protein HMPREF0497_2887 [Lactobacillus buchneri ATCC 11577] # 1 206 1 206 206 319 98.0 8e-86 MKKMVFIAGVSLAIPFIFASAASASYYSSNALKLKVRPVNNSQTKIAGTATKGSSVNFYQ DGDLKAKATTNSSGHFTIPLKYTLSHIGSYKITATKFNYRPVSQTFKVAMYPYTAQIKPI QAQIDTLQKQLDSIQSQLSTMQSTADGLANSDTSSADYQRAFTAAGSNPQAFQASYLGLE QQSIDIQNQISPLQAQIQHYQDLSEQ Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:34:41 2011 Seq name: gi|238617812|gb|GG669609.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD6, whole genome shotgun sequence Length of sequence - 13766 bp Number of predicted genes - 10, with homology - 9 Number of transcription units - 9, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 211 121 ## LVIS_1805 IS30 family transposase - Prom 332 - 391 4.5 - Term 355 - 391 0.2 2 2 Tu 1 . - CDS 403 - 609 370 ## gi|227510821|ref|ZP_03940870.1| conserved hypothetical protein - Prom 658 - 717 3.7 3 3 Tu 1 . - CDS 752 - 1024 255 ## gi|227510822|ref|ZP_03940871.1| hypothetical protein HMPREF0496_2985 - Prom 1053 - 1112 2.1 4 4 Tu 1 . - CDS 2843 - 4957 1431 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 5177 - 5236 80.4 5 5 Tu 1 . - CDS 6228 - 6518 190 ## + Prom 6379 - 6438 4.4 6 6 Tu 1 . + CDS 6536 - 7711 777 ## COG3328 Transposase and inactivated derivatives + Term 7822 - 7871 4.1 + Prom 7825 - 7884 7.3 7 7 Tu 1 . + CDS 7909 - 8817 830 ## COG0598 Mg2+ and Co2+ transporters + Term 8860 - 8896 -1.0 - Term 10025 - 10066 6.1 8 8 Op 1 . - CDS 10098 - 10433 277 ## gi|227510827|ref|ZP_03940876.1| conserved hypothetical protein 9 8 Op 2 . - CDS 10433 - 11299 514 ## COG1192 ATPases involved in chromosome partitioning - Prom 11539 - 11598 80.3 10 9 Tu 1 . + CDS 12807 - 13764 477 ## LSL_2000 plasmid replication initiation protein Predicted protein(s) >gi|238617812|gb|GG669609.1| GENE 1 1 - 211 121 70 aa, chain - ## HITS:1 COG:no KEGG:LVIS_1805 NR:ns ## KEGG: LVIS_1805 # Name: not_defined # Def: IS30 family transposase # Organism: L.brevis # Pathway: not_defined # 1 70 1 70 314 133 98.0 3e-30 MFLRAKGLSIRAVALRLGRNPSTISRELKRCAGNYSSSKADNDYHQKRQNCHKKRLLDSH PQLRRQIVHY >gi|238617812|gb|GG669609.1| GENE 2 403 - 609 370 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227510821|ref|ZP_03940870.1| ## NR: gi|227510821|ref|ZP_03940870.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus hilgardii ATCC 8290] conserved hypothetical protein [Lactobacillus hilgardii ATCC 8290] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 68 1 68 68 71 100.0 2e-11 MSLKDKADSTKDKVSGKAKEVEGKATGDKAREAQGKGQGLLGKAKDKIADAKDAVKDTVD DLKKKSDK >gi|238617812|gb|GG669609.1| GENE 3 752 - 1024 255 90 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227510822|ref|ZP_03940871.1| ## NR: gi|227510822|ref|ZP_03940871.1| hypothetical protein HMPREF0496_2985 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_2985 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 90 27 116 116 157 100.0 3e-37 MTILNNNKIYQLLNERGLGDVGPETAEAVESILGELDRKNVLRKNDSKNYFIDRSTLEAT SFLRALVEQNWIIIAQNEKIIKALNASDIN >gi|238617812|gb|GG669609.1| GENE 4 2843 - 4957 1431 704 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 60 701 149 809 815 555 43 1e-158 MANFYENDPFFNNDMDDVFNQLFRRMDNQNSERARYLVNGKSLTPDEFAQYRATGKLPQN NKTIEVSKDGKQAVKKGGILEKLGTNLTEQARDGLLDPVIGRENEIQETAEILSRRTKNN PILVGDAGVGKTAVVEGLAQAIVAGKVPETIQDKEIYSIDLSSLEAGTQYRGSFEENIKQ LVKEVKAAGNIILFFDEIHQIIGTGATGGEDGGKGLADIIKPALSRGELTVIGATTQDEY RNTILKNAALARRFNEVVINEPTAADTLRILQGVKKLYEKHHHVVLPDDVLKAAVDYSIQ YIPQRTLPDKAIDLIDMTAAHLAAKNSQTDVETLDQRVKKLEAAKEAAVKSEDFKKAADI KKSIEETKQKIKETDQKEKITATIDDVAQSVERLTGIPVSDMGANDIEHLKNLDKRLKSK VIGQDEAVEMVAKAIRRNRAGFSEGDQPIGSFLFVGPTGVGKTELAKQLALDMFGNENAI IRLDMSEYADRTAVSKLIGTSAGYVGYEDNANTLTERVRRNPYSIVLLDEIEKADPQVLT LLLQVMDDGRLTDGQGNVISFKNTIIIATSNAGFGNEALSGDKQRDQSLMDKLAPFFRPE FLNRFNGIVEFSHLTKQDLSQIVDLMLADVQKTLAKKSIKLEVTKAAKDWLMEQGYDEAM GARPLRRVIEQQIRDKVTDFYLDHLDVKNLKADLVDGEIVISAA >gi|238617812|gb|GG669609.1| GENE 5 6228 - 6518 190 96 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFSVVTKYHKGRHSLFLYNSEIFYAFTQDILRSLFFIKVFKRLFQQANRLENQVDVQGYQ HNGGKPSSVLDPSMIGELTHQLLVTGEHDQWDDGKR >gi|238617812|gb|GG669609.1| GENE 6 6536 - 7711 777 391 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 390 1 390 391 405 51.0 1e-113 MNELTTEIIAALAQKQDLDEVFRYHLEIAINQLLQTELAEFLGYERYSYAGINTGNNRNG SYERSFDTKYGQLNLTIPRDRNGRFENHTLPAYGRHSDNLETTVIQLYTKGITTAEIAEL IEKMYGAHYSKATVSNMTKAVNEQVQAFQQRRLASQYAAIFLDATYLPLKRDTVQKEAVH IAIGIRPDGTKEVLNYQVAPTESTGIWTELLGTLIKQGVKDVLLFVADGLVGLDEGLNRH FPKAKRQRCLVHVGRNLMNKVRVKDRKAVISDFKQVHRAANREAAELKLNEFANNWHQTY PKLIKDLLKMPNLLTFMDFPPAIRQSLYSTNLIENFNKHLKRTTHHKEQFPTEDSLDRFL VSQFNVYNEKSLKRIHRGFKGLQDTLEASFI >gi|238617812|gb|GG669609.1| GENE 7 7909 - 8817 830 302 aa, chain + ## HITS:1 COG:lin0568 KEGG:ns NR:ns ## COG: lin0568 COG0598 # Protein_GI_number: 16799643 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Listeria innocua # 6 297 4 297 301 123 31.0 5e-28 MIKPEKTINGTKWIETIQINAEERATLEDQYGIDEDIIEYVTDNDESTNYVYDINEDDQL FIFLAPYALDKDALRYITQPFGMLLHKGVLFTFNQSHIPKVNTALYSALDNPEVKSVDAF ILETLFTVVDSFIPISRAITKKRNYLDKMLNRKTKNSDLVSLSYLQQTLTFLSSAVQTNL SELDRLPKTHFGVGADQDKIDLFEDVQIEGEQVQRMFEIETQVVDRIDHTFNSLANNNLN DTMKFLTIWSLTMAVPTIITGFYGMNVKLPLAGMQYAWMLTLGISVALIVAMLIMLKVWR KM >gi|238617812|gb|GG669609.1| GENE 8 10098 - 10433 277 111 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227510827|ref|ZP_03940876.1| ## NR: gi|227510827|ref|ZP_03940876.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 111 1 111 111 162 100.0 5e-39 MASDNSTDDILKGVKKGNPLLRNHTKNFKPQQSFEFSNSNDHKTLKTKFKNQKKSIKIST ETKTQLDILKEIESMKFDYEIIQLLLDSYVNELNPEERSIYETMLKFRSQK >gi|238617812|gb|GG669609.1| GENE 9 10433 - 11299 514 288 aa, chain - ## HITS:1 COG:pli0069 KEGG:ns NR:ns ## COG: pli0069 COG1192 # Protein_GI_number: 18450351 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Listeria innocua # 13 284 13 285 293 273 48.0 3e-73 MDSAILVRDIEAIKKNKGAIVITSGNQKGGAGKTTNTELIGYQLAKYGIKTLLIDMDPQN NLSQHLILTRSARNDDVLVIQKTLMVGVTQGNVEDLPMRVLDDLYLLPCSTDFADYPKYL WKTTKNDNEADHLIPNLFEPLRSQYDVILIDTPPLNKEISTAACVFSDFVLIALQTEADS LNGAEEYLSLLSSLKTEYDLPVQVLGVLPMIMNKRGTVDKSVLATATSEFGRENIFSTVI PRMERIKRFKLTGITEKDRFDKRVLDLYERITAEFVRRIVVYGELEDK >gi|238617812|gb|GG669609.1| GENE 10 12807 - 13764 477 319 aa, chain + ## HITS:1 COG:no KEGG:LSL_2000 NR:ns ## KEGG: LSL_2000 # Name: repA # Def: plasmid replication initiation protein # Organism: L.salivarius # Pathway: not_defined # 1 319 1 321 364 431 70.0 1e-119 MTKSTDFNYYEADNVYGALFFQFPKVLMYGEQYRHLSNDAKLAYMVLKDRLEYSLRNNWV DEDNHIYFIFTNQELGNLFNCSEHKVIKIKAELESIGLLFQKQLGFNPKTKKNEPNRLYL SKLDVQATDVYLRGEYGQKDAQSLGTSGTAKNAVPHKTAESLGISGTAKNAVPHKTVDKD AQSLGTSGTAKNAVNLDLERSDRDKDRYLIDTPELDFSTANYSQAEIEQQNRDLIENAYH FLTHSETNDIFLEPEAVQLISFWARTPQQMRRFIKIILNAKYKVEKEHQDIGVYIILDDP ELKPLMTQTLRRYFNVLRS Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:35:17 2011 Seq name: gi|238617811|gb|GG669610.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD7, whole genome shotgun sequence Length of sequence - 23927 bp Number of predicted genes - 20, with homology - 20 Number of transcription units - 12, operones - 6 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 180 - 231 12.4 1 1 Tu 1 . - CDS 298 - 1056 484 ## COG0500 SAM-dependent methyltransferases - Prom 1246 - 1305 7.6 2 2 Tu 1 . - CDS 1956 - 2633 395 ## pSF118-20_06 putative replication initiation protein - Prom 2697 - 2756 3.8 + Prom 4159 - 4218 4.4 3 3 Op 1 . + CDS 4290 - 5120 589 ## COG1192 ATPases involved in chromosome partitioning 4 3 Op 2 . + CDS 5113 - 5421 188 ## gi|227510835|ref|ZP_03940884.1| hypothetical protein HMPREF0496_2998 5 3 Op 3 . + CDS 5493 - 5663 190 ## gi|227510836|ref|ZP_03940885.1| hypothetical protein HMPREF0496_2999 6 3 Op 4 . + CDS 5670 - 5843 123 ## PEPE_0982 hypothetical protein 7 4 Tu 1 . - CDS 6934 - 9099 1488 ## COG1511 Predicted membrane protein - Prom 9143 - 9202 4.8 + Prom 9057 - 9116 7.4 8 5 Op 1 . + CDS 9254 - 9994 434 ## Lbuc_1808 hypothetical protein 9 5 Op 2 . + CDS 10013 - 12178 1372 ## COG1511 Predicted membrane protein + Term 12232 - 12269 3.0 + Prom 13114 - 13173 80.3 10 6 Tu 1 . + CDS 13400 - 15145 625 ## Lbuc_0464 hypothetical protein + Term 15229 - 15268 -0.9 - Term 15347 - 15400 15.5 11 7 Op 1 . - CDS 15504 - 15998 585 ## gi|227510842|ref|ZP_03940891.1| hypothetical protein HMPREF0496_3005 - Prom 16018 - 16077 3.1 12 7 Op 2 . - CDS 16090 - 16728 542 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 16757 - 16816 6.6 + Prom 17530 - 17589 5.5 13 8 Op 1 . + CDS 17640 - 17873 124 ## Lbuc_2459 hypothetical protein + Prom 17881 - 17940 2.3 14 8 Op 2 . + CDS 17995 - 18189 209 ## Lbuc_2460 hypothetical protein + Term 18213 - 18269 11.3 + Prom 18218 - 18277 2.7 15 9 Op 1 . + CDS 18346 - 18831 287 ## LSL_2000 plasmid replication initiation protein 16 9 Op 2 . + CDS 18867 - 19046 178 ## gi|227510847|ref|ZP_03940896.1| hypothetical protein HMPREF0496_3010 + Term 19098 - 19136 -0.7 + Prom 19073 - 19132 5.0 17 10 Tu 1 . + CDS 19274 - 19777 323 ## gi|227510848|ref|ZP_03940897.1| hypothetical protein HMPREF0496_3011 + Term 19811 - 19852 -0.9 + Prom 20358 - 20417 4.5 18 11 Tu 1 . + CDS 20522 - 21244 687 ## COG0120 Ribose 5-phosphate isomerase + Term 21328 - 21377 9.2 19 12 Op 1 . - CDS 22333 - 22515 125 ## LAC30SC_07545 hypothetical protein - Prom 22544 - 22603 2.5 20 12 Op 2 . - CDS 22610 - 23701 715 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - Prom 23781 - 23840 3.7 Predicted protein(s) >gi|238617811|gb|GG669610.1| GENE 1 298 - 1056 484 252 aa, chain - ## HITS:1 COG:FN0736 KEGG:ns NR:ns ## COG: FN0736 COG0500 # Protein_GI_number: 19704071 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Fusobacterium nucleatum # 1 251 1 251 251 186 39.0 5e-47 MNKEKLNLWHQEEQYGITGWDFSHLDGRWQNELLPWNYRKLVLSYLKSDMQLLDMGTGGG ELLKTFHHPSNRTQVTEAWQPNINLLKHTIAKQGIKVHALPAKHEDALPVKNGSLNMITN SHAAFNPKLIKDKLKTGGYFISQQVGALNNYSLSRFFDSAYVPAYPDNTLLKTVADFQNL GFEILLAKEAQPSMTFFDIGAIIYYASIIPWDFPDFSVDHCLSQLTQLDQLIQNDGSVTT KEDRFILVTRKM >gi|238617811|gb|GG669610.1| GENE 2 1956 - 2633 395 225 aa, chain - ## HITS:1 COG:no KEGG:pSF118-20_06 NR:ns ## KEGG: pSF118-20_06 # Name: repA # Def: putative replication initiation protein # Organism: L.salivarius # Pathway: not_defined # 1 225 1 227 367 276 64.0 5e-73 MNQTNFNFIESEKAYATRFFQFPQVLIYGSQYKTLSDSAKLGYMILHDRLDYSLKNNWVD EDNRVYFIFTNQELTDLMGWSKKKVIRVKNELENQGLLFQKTMHFNPKTGKNEPNRLYLA DLEVTATDIYIKSRQQEPQTLGTRESVKTEPSRKFVKTLDTRESVKTEPSRKFVKDTPQT LDTRESVKKSHDLDYTNNIDTNRYNIDTQKLDFSTAQFSPAELEK >gi|238617811|gb|GG669610.1| GENE 3 4290 - 5120 589 276 aa, chain + ## HITS:1 COG:pli0069 KEGG:ns NR:ns ## COG: pli0069 COG1192 # Protein_GI_number: 18450351 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Listeria innocua # 4 272 21 280 293 219 44.0 6e-57 MVKVITFGNFKGGTGKTTNSCMISYRLAKQGYKVLLADLDPQANATALYLKTKQVQNKEV VKFDNTLMNAISNDDISPIVTKIRDNLYLLPSFADFTSYPIFLEKKYPNTDDQYKRAKHF SNLLDKIKDDYDYIIIDTPPTVSVYTDSALMASDSVIIVLQTQERSYVGAEAFISYLQEL VSNYDADFNIAGILPVLLKNNSQVDQSILEQAEDEFDKDNIFKNVVKNMERLKRYDIIGI VDPDLKTQKHDMHDMRVDALYKKITNEFVERVGKDE >gi|238617811|gb|GG669610.1| GENE 4 5113 - 5421 188 102 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227510835|ref|ZP_03940884.1| ## NR: gi|227510835|ref|ZP_03940884.1| hypothetical protein HMPREF0496_2998 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_2998 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 102 1 102 102 137 100.0 4e-31 MSKDLLKKSLNSDVTQVPKPSNIFSRDMKVKANTKKSKPKTTTIRCSVETADMVNALSAV LNFKSVDEMLEHTINSTLEGLTNEERAEYRTVKKIYTSRRSK >gi|238617811|gb|GG669610.1| GENE 5 5493 - 5663 190 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227510836|ref|ZP_03940885.1| ## NR: gi|227510836|ref|ZP_03940885.1| hypothetical protein HMPREF0496_2999 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_2999 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 56 1 56 56 65 100.0 2e-09 MNEEDKKKEEQQRLADKKFEDFIQGIYDTNKEPSNEDWLDNVASAMVPNEADKEKR >gi|238617811|gb|GG669610.1| GENE 6 5670 - 5843 123 57 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0982 NR:ns ## KEGG: PEPE_0982 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 55 1 55 80 93 94.0 3e-18 MFGSLLQLLGLSRWYHHEQHADRSNARKASGQSAFSYDDLKGLRKLAFWLFVFSIFL >gi|238617811|gb|GG669610.1| GENE 7 6934 - 9099 1488 721 aa, chain - ## HITS:1 COG:CAC2582 KEGG:ns NR:ns ## COG: CAC2582 COG1511 # Protein_GI_number: 15895842 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 2 721 4 722 722 425 36.0 1e-118 MVKNIKLIYQRDLKSIFKYKAALLTITALCVLPCLYTLINVKALWNPYNSQEVSRIPVAV VNQDTGSTLQGKQMNFGDQIVKNMKHNHQIGWRFVSEKTAKTRLRNGQYYAEVKIPSDFS TKLASITSANPQKAQINYIANTKASPIGDKITETAAKTLVSTVKKQFVYQINATIFSYLN IAGKKAGSKQAEILNLKDLIISLGDSMELATSSLGDISQASNGLAMVFSELKPVISASQN VNVAGVLGTTNDELIKEMNRSINQSFNRVDNNLTSVQGNAKQLAVLSKQLSQLNAANRHG QVNRLADQLETQIKLIRGQLTPLISYLQTANQAHHTGAITSLINELKETQQLLDGQQKEV TTLKNNLNSGNRTITGLQQRLANNAYSTSSKLTDSVNRYHNQARSDLDGIKQNLLATTNQ TSGILSDLNQIRNLNEKSLDTVIHGNQLIGDTTGQLESRLLQYKDIILTASNQLKLTSDN NIADIISVLQNNPKLMGNALAEPFNVKDENIYPVSTFGSAFSPTYMALSIWVGCAMLVAV LHTSLPKYHRFAKLKPKEEYLGKMLIFNTLSMIQTIIIILSTVFILHVHVESLFLMLMVG VVTSLTFSVIVYTMASVFGNLGKALAVMMVAVQLAGSGAMYPVQLNPLIFRLMQPIFPFS YSVSGFREAIGGPNIGTVTVDFFVLGCMLIMALLVGLFLKASLKRVTDRLLNDFVKSGIG Q >gi|238617811|gb|GG669610.1| GENE 8 9254 - 9994 434 246 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1808 NR:ns ## KEGG: Lbuc_1808 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 17 246 1 229 229 281 69.0 2e-74 MLTALLHSLTSKEILQLKRSLINLLITNLVVIFGIGLSQSITAAAKAKPAKVTSIKTLTK DSYRATSGYLYSSAKLTKKVHNADNYPLTTFYTYRSANITRANGNKAVYYYIKNGNGKVK GWIWRGHLVRMINVSKRRQQINQIIGLIDTLSINNRNQIITILESMTKTNTLADLLNQLD LFKSAIPNDADIAKLNEIFQMIKSDGQELNYLFSQGINRLYPKVVAIHNLNDKVFALAQG LLHRLN >gi|238617811|gb|GG669610.1| GENE 9 10013 - 12178 1372 721 aa, chain + ## HITS:1 COG:CAC2583 KEGG:ns NR:ns ## COG: CAC2583 COG1511 # Protein_GI_number: 15895843 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 1 721 1 709 709 445 35.0 1e-124 MRTIFTLFKRDLSSIFHSRPVWITLLAFCLIPAIYAIPNIKASWDPYSKANTSRLPIAVV NGDQGSRINGRSIDVGKQIVTQLKQSKDIHWVITNSWQGNNGLDQGKYYALIEIPNDFSS KLSTLTTTNPQKPNIIYKSNEKLNPAATKITGQAKDSLTEQVRDNFIKISSKAALKEMNT AGETLNTHKPQILQIRTSLLDAIKTIKKTQGYLGQVNNDSKDMQQYLSTVKNDIPKISNQ ITDLQKVISHGKSLTSATKTTLAATKSDLADGLADLQTDNQQLSALVSDLRASSANPSSS LIKTEIAQSQTVTNTILDHLNNALRLADIINNIFPSNRTTSLVRSISQAKKTVRQQQRNL NNLKSKAAAGSSKQTLSRLAAKIARTSTQLGRNIDAANTSFNDSVSQGLDNLNNTLTTGM TGDDQVLQSLRSLIPQLNALADAGTSISKLSISRVKQIYSRLTDIQAKLNDLNDQTKFIN EKNLDHLINLLTENPQVANLLSSPITLKQADLYNMGKFGYGVTPFYTTLSIWIGILLLTT IISWKYRSKKNERFPRANLIEKYVGKLLLYLSISLTQTTFTMLGELFILGIRPVSVWAML ATAYTATIVFTIMMYTLVYMFGNVGKVISVLLMIIQLFGTGGIYPLETIPPYLAALAPYL PFTYAIQGFREAIAGPIPSVFWHSLLVLSGFAIAFLLIAPLRRVFQKPIAELENGFHQSK L >gi|238617811|gb|GG669610.1| GENE 10 13400 - 15145 625 581 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0464 NR:ns ## KEGG: Lbuc_0464 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 559 449 1019 1033 561 50.0 1e-158 MVLLNIISNGQGWLSPNNSHNLNAEVLSGTPAKWVKDFYDQANRALKKDKGFYRTSLLRG YYPQRTAGNDIPMVLGTHDLDSYYSIQNGFLSQFNKSLGNSQSVANSPTGEADNRTTLSN LLGVRYIFASDDILTHPKAVPYGYHIIKQLDYFKRTVSNLSNNSGTILLKSDNALPLLYT QNKAISRSNYDQLTPLRREQSLIDGAVVIHKVKTVPVINPKPIVKTVPYQVNLYQNHIIN TVTKAVLYRLDRNKLNTLANQPKFNSTELKREALITGLKLNNSILRKKLRQNSHIINQNQ RINHTSLHLMSSDIQDRHLSYQLQLRDPQRYRSCELYLSIKGIKSINHTIRDRLQSLTNY SIISGKPVSKLQKINRLRTAIKYPDLGGFSIVAKTNNYRTYSHQLPMNNLSDYQKQHQML LNLGYSSKLRRTIILNFSGVKQLKFNQVKVLAVPFNNRYTKKMQTLKKNGLKKLQVTNNK ITGITRTTNRTRILTTSIPYSNGWQIRVDGHLVKRLRINVGFIGAQIPAGKHVIQLTYKT PGLKLGQLLSQLGFWIMFLSSLVTIFNWLRFRGIHMNKKQS >gi|238617811|gb|GG669610.1| GENE 11 15504 - 15998 585 164 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227510842|ref|ZP_03940891.1| ## NR: gi|227510842|ref|ZP_03940891.1| hypothetical protein HMPREF0496_3005 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_3005 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 164 1 164 164 266 100.0 3e-70 MTKLWCAKIQLTTKQRTYRFSNDLQLALNQTAHPQQILQALIVVPLAPYTDKQQPPMGVG KIQKIYKMAWFKTRGLPITRGQLMGAAYWTERPYVQVAGYLTHNYVWWSQQQISKDITYW QRQFYQQTAYPSLLWRKITNWRIRRQLGRIKRQRWQKNIQYWHI >gi|238617811|gb|GG669610.1| GENE 12 16090 - 16728 542 212 aa, chain - ## HITS:1 COG:pli0059 KEGG:ns NR:ns ## COG: pli0059 COG1961 # Protein_GI_number: 18450341 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 3 200 2 196 199 112 40.0 5e-25 MTKIGYARVSTREQNLARQTEQLKAAGVTKLFQEKLSGKNAARPQLQAMLDYLRDDDEVI VLSLDRLGRNSADLTEIMEAIRHKGATLNILNLPSFNSIEDPNLRNLITNIIIELYKYMA QEERETIKVRQQQGIEIAKRQGKYHGKVREYGPHSPNRQKRYIYKEACRLLTRREQGEEL TKRQIARMLGIAPVTLYRIEKYRAEDQIKAAN >gi|238617811|gb|GG669610.1| GENE 13 17640 - 17873 124 77 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2459 NR:ns ## KEGG: Lbuc_2459 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 77 39 115 115 146 94.0 3e-34 MVAQKIPTNSIKNQKIVFNWVNMGQWEEDVSIRHQHHTYQYIYNMSWQDKKVSLSIYDHR QGIKDTLAPYPPLEYDR >gi|238617811|gb|GG669610.1| GENE 14 17995 - 18189 209 64 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2460 NR:ns ## KEGG: Lbuc_2460 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 58 22 79 79 65 79.0 8e-10 MWNSFNLTRKTLVLLNTVGTLLMTVLTWSITYGMLLIPILIVYAISIVILFKLPLPAKKN RGGL >gi|238617811|gb|GG669610.1| GENE 15 18346 - 18831 287 161 aa, chain + ## HITS:1 COG:no KEGG:LSL_2000 NR:ns ## KEGG: LSL_2000 # Name: repA # Def: plasmid replication initiation protein # Organism: L.salivarius # Pathway: not_defined # 1 153 1 153 364 227 77.0 1e-58 MKEFDNFNYYEVNNVYEASFFQFPKVLMYGEQYRYLSSGAKLAYMVLKDRLEYALRNHWV DEEGHVYFIFSNQELGNLLNCKNQKVVKIKRELAAAHLLIQKQPVFNPRTKKDEPNRLYL STLDVKATDVYLRGKYGQKASQPLGTSRNVKITHNLDREPK >gi|238617811|gb|GG669610.1| GENE 16 18867 - 19046 178 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227510847|ref|ZP_03940896.1| ## NR: gi|227510847|ref|ZP_03940896.1| hypothetical protein HMPREF0496_3010 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_3010 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 59 1 59 59 100 100.0 5e-20 MSKRALIYILRYLLAIGLFAVYYAVFENQSHDLIQTVFAVAVGLGIATLPVKSIDQNKK >gi|238617811|gb|GG669610.1| GENE 17 19274 - 19777 323 167 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227510848|ref|ZP_03940897.1| ## NR: gi|227510848|ref|ZP_03940897.1| hypothetical protein HMPREF0496_3011 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_3011 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 167 1 167 167 256 100.0 3e-67 MYKKMIIMLVTVVTFIVSFNINALTASAVPLDHYHIVITYTKPYKKYIGHKYSNWNTIYS AKKKTKSTFSKSVTWANSLTGNVSLSKGKLTALLGFNVTRSDTVTINVPFSFNGKYRQKV QYRNRYRKYKITRIEYLKIVGSSTQKKHLKAFAYKYDGVVSRVVRDK >gi|238617811|gb|GG669610.1| GENE 18 20522 - 21244 687 240 aa, chain + ## HITS:1 COG:SP0828 KEGG:ns NR:ns ## COG: SP0828 COG0120 # Protein_GI_number: 15900715 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 12 235 4 226 227 217 50.0 2e-56 MSTINSELQNKLKKAAAVKAADYVKDGMIVGLGSGSTVTMLVDELGRRVQEDGLNFTAVS TSISTAKQAESLGIKISDLDSIDTIDLTIDGADQVDSDFNGIKGGGGNLFWEKIVAANSK KLIWIVDQSKIVDRIGAFPLAVDVEPFGSHHVLKKFSDAGFNPVVRTDKNGKIFKTDSNN IILDLHLHKINDPDKLSNALINTVGVVEHGLFLNAVNEVVVGKEGAPQIMINSKAHPSYQ >gi|238617811|gb|GG669610.1| GENE 19 22333 - 22515 125 60 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_07545 NR:ns ## KEGG: LAC30SC_07545 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 60 1 60 60 103 93.0 2e-21 MTEHPIVPLELPKDRIRPKNRPGKNRLVLNLKSNGVELSFYSDATNELMLEVVDRFLSHD >gi|238617811|gb|GG669610.1| GENE 20 22610 - 23701 715 363 aa, chain - ## HITS:1 COG:SA0127 KEGG:ns NR:ns ## COG: SA0127 COG2244 # Protein_GI_number: 15925836 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 4 354 119 467 476 129 26.0 1e-29 MWAQSINLVAAAFDISWLYQGLEDFKRTVLRNTFVKILSMIAVFIFIKDSSDVTLYIVIV ALSNFLGNFTLWPHALKMLKKVQLKELRPFRHFVPAVTMFVPQIASQLYVQLNRTMLGVM VNEKASGFYQYSDNLIKLVLAFATATGTVMLPHVANAFAQGDMRKVKTMLYKSFDFVSAL TYPMMFGIAGVSLTLAPLYYSQAYAPIGTAMFIESIVILMIGWSNVIGTQYLLPVNRVKE FTTSIIVGAVVNIILNFPLIYFDGLNGAMWSTVISEASVTVYQLWGVRHDLDLKLLFKQN WKYLISGVAMFVPVFWLNTHMKASWLWLILKVLLGIVIYVAMVLVMRAPVVDQVKDLIKE HKH Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:36:38 2011 Seq name: gi|238617810|gb|GG669611.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD8, whole genome shotgun sequence Length of sequence - 73963 bp Number of predicted genes - 66, with homology - 66 Number of transcription units - 22, operones - 17 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 191 - 263 73.2 # Thr GGT 0 0 + Prom 189 - 248 74.2 1 1 Op 1 . + CDS 452 - 931 390 ## LSL_1808 hypothetical protein + Prom 999 - 1058 7.8 2 1 Op 2 . + CDS 1148 - 1657 170 ## Lbuc_1624 LPXTG-motif cell wall anchor domain-containing protein 3 1 Op 3 . + CDS 1689 - 2303 436 ## Lbuc_1624 LPXTG-motif cell wall anchor domain-containing protein 4 1 Op 4 . + CDS 2290 - 3132 527 ## Lbuc_1623 NEAr transporter 5 1 Op 5 33/0.000 + CDS 3148 - 4053 661 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 6 1 Op 6 35/0.000 + CDS 4050 - 5006 656 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 7 1 Op 7 . + CDS 4990 - 5763 233 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 5837 - 5880 6.1 - Term 5820 - 5871 12.2 8 2 Tu 1 . - CDS 5901 - 7541 1635 ## COG1252 NADH dehydrogenase, FAD-containing subunit - Prom 7629 - 7688 12.2 9 3 Op 1 31/0.000 + CDS 7896 - 9362 1040 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 10 3 Op 2 5/0.000 + CDS 9355 - 10365 825 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 + Term 10380 - 10416 1.0 + Prom 10474 - 10533 5.4 11 3 Op 3 14/0.000 + CDS 10564 - 12294 201 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 12 3 Op 4 . + CDS 12291 - 14030 236 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Term 14083 - 14132 14.9 + Prom 14261 - 14320 10.5 13 4 Op 1 1/0.000 + CDS 14493 - 15104 478 ## COG0431 Predicted flavoprotein 14 4 Op 2 . + CDS 15101 - 16381 1311 ## COG0431 Predicted flavoprotein + Term 16387 - 16435 -0.7 - Term 16430 - 16488 13.6 15 5 Op 1 . - CDS 16546 - 17523 824 ## COG0142 Geranylgeranyl pyrophosphate synthase - Prom 17560 - 17619 4.8 - Term 17620 - 17669 1.1 16 5 Op 2 . - CDS 17734 - 20052 1589 ## COG3973 Superfamily I DNA and RNA helicases - Prom 20274 - 20333 5.7 + Prom 20323 - 20382 5.8 17 6 Op 1 . + CDS 20625 - 21641 846 ## COG0180 Tryptophanyl-tRNA synthetase 18 6 Op 2 . + CDS 21665 - 22594 642 ## COG0248 Exopolyphosphatase + Term 22659 - 22695 -1.0 19 7 Op 1 . + CDS 22703 - 23953 1058 ## COG1257 Hydroxymethylglutaryl-CoA reductase 20 7 Op 2 . + CDS 23963 - 24934 794 ## Lbuc_1607 hypothetical protein 21 7 Op 3 . + CDS 24964 - 25692 662 ## COG0846 NAD-dependent protein deacetylases, SIR2 family 22 7 Op 4 . + CDS 25718 - 26566 487 ## COG1801 Uncharacterized conserved protein + Prom 26650 - 26709 6.1 23 8 Op 1 8/0.000 + CDS 26747 - 28774 1722 ## COG0143 Methionyl-tRNA synthetase + Term 28783 - 28840 6.2 + Prom 28784 - 28843 4.7 24 8 Op 2 3/0.000 + CDS 28866 - 29651 651 ## COG0084 Mg-dependent DNase 25 8 Op 3 7/0.000 + CDS 29638 - 30195 573 ## COG1658 Small primase-like proteins (Toprim domain) 26 8 Op 4 2/0.000 + CDS 30197 - 31087 742 ## COG0030 Dimethyladenosine transferase (rRNA methylation) + Term 31090 - 31134 1.2 + Prom 31095 - 31154 3.4 27 8 Op 5 2/0.000 + CDS 31175 - 31423 186 ## COG4466 Uncharacterized protein conserved in bacteria + Term 31444 - 31486 5.0 + Prom 31548 - 31607 6.3 28 8 Op 6 . + CDS 31727 - 32500 470 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase + Term 32529 - 32581 13.0 + Prom 32558 - 32617 10.8 29 9 Op 1 42/0.000 + CDS 32657 - 33340 174 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 30 9 Op 2 . + CDS 33333 - 34136 785 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components + Prom 34158 - 34217 6.8 31 10 Op 1 . + CDS 34278 - 35063 723 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 32 10 Op 2 11/0.000 + CDS 35089 - 36465 1201 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) 33 10 Op 3 . + CDS 36516 - 37508 904 ## COG0462 Phosphoribosylpyrophosphate synthetase 34 10 Op 4 . + CDS 37508 - 37879 335 ## Lbuc_1593 hypothetical protein 35 11 Op 1 3/0.000 - CDS 38881 - 39687 795 ## COG0561 Predicted hydrolases of the HAD superfamily 36 11 Op 2 1/0.000 - CDS 39709 - 41043 776 ## COG1078 HD superfamily phosphohydrolases 37 11 Op 3 . - CDS 41065 - 41892 611 ## COG0095 Lipoate-protein ligase A - Prom 41920 - 41979 7.1 + Prom 41919 - 41978 7.3 38 12 Op 1 . + CDS 42065 - 42499 324 ## COG4506 Uncharacterized protein conserved in bacteria + Prom 42505 - 42564 2.5 39 12 Op 2 5/0.000 + CDS 42589 - 43188 651 ## COG3343 DNA-directed RNA polymerase, delta subunit + Term 43280 - 43334 8.5 + Prom 43190 - 43249 7.3 40 12 Op 3 . + CDS 43365 - 44984 1572 ## COG0504 CTP synthase (UTP-ammonia lyase) + Term 45002 - 45064 12.2 + Prom 45108 - 45167 9.8 41 13 Op 1 . + CDS 45252 - 46538 882 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase + Prom 46547 - 46606 4.1 42 13 Op 2 . + CDS 46641 - 46892 447 ## PROTEIN SUPPORTED gi|227509291|ref|ZP_03939340.1| ribosomal protein L31 43 14 Tu 1 . - CDS 47045 - 48193 936 ## COG0477 Permeases of the major facilitator superfamily - Prom 48331 - 48390 6.2 44 15 Tu 1 . + CDS 48329 - 49048 389 ## COG3764 Sortase (surface protein transpeptidase) + Term 49115 - 49157 -0.8 - Term 49006 - 49038 2.1 45 16 Tu 1 . - CDS 49045 - 49512 415 ## COG0394 Protein-tyrosine-phosphatase - Prom 49541 - 49600 7.3 + Prom 49488 - 49547 6.1 46 17 Op 1 . + CDS 49660 - 50427 481 ## Lbuc_1579 hypothetical protein + Term 50430 - 50470 1.5 47 17 Op 2 2/0.000 + CDS 50487 - 51869 1022 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase + Term 51926 - 51976 -0.9 + Prom 51918 - 51977 5.6 48 17 Op 3 . + CDS 52072 - 53580 1328 ## COG0513 Superfamily II DNA and RNA helicases + Term 53614 - 53654 5.2 + Prom 53623 - 53682 6.2 49 18 Op 1 5/0.000 + CDS 53711 - 54079 377 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) 50 18 Op 2 . + CDS 54076 - 55200 1012 ## COG0787 Alanine racemase 51 18 Op 3 . + CDS 55273 - 55557 303 ## Lbuc_1574 hypothetical protein 52 18 Op 4 . + CDS 55576 - 55953 300 ## COG2337 Growth inhibitor + Term 56189 - 56255 17.7 - Term 56177 - 56243 17.7 53 19 Op 1 . - CDS 56267 - 56911 574 ## COG0517 FOG: CBS domain - Prom 56939 - 56998 5.6 - Term 57068 - 57112 8.2 54 19 Op 2 . - CDS 57134 - 58090 955 ## COG0039 Malate/lactate dehydrogenases - Prom 58110 - 58169 6.0 + Prom 58426 - 58485 1.6 55 20 Op 1 7/0.000 + CDS 58505 - 59065 499 ## COG0193 Peptidyl-tRNA hydrolase 56 20 Op 2 2/0.000 + CDS 59109 - 62615 2427 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 57 20 Op 3 1/0.000 + CDS 62605 - 64176 932 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 58 20 Op 4 . + CDS 64193 - 64465 382 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) + Prom 64470 - 64529 9.8 59 21 Tu 1 . + CDS 64561 - 64968 367 ## Lbuc_1566 Septum formation initiator + Term 65010 - 65046 -0.6 + Prom 65116 - 65175 8.6 60 22 Op 1 2/0.000 + CDS 65207 - 65716 351 ## PROTEIN SUPPORTED gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein + Term 65751 - 65792 1.1 + Prom 65778 - 65837 7.0 61 22 Op 2 10/0.000 + CDS 65864 - 67243 546 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 62 22 Op 3 11/0.000 + CDS 67236 - 67778 501 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase 63 22 Op 4 1/0.000 + CDS 67849 - 70002 1337 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 + Term 70016 - 70062 9.2 64 22 Op 5 2/0.000 + CDS 70080 - 70982 795 ## COG1281 Disulfide bond chaperones of the HSP33 family + Prom 70999 - 71058 3.4 65 22 Op 6 3/0.000 + CDS 71131 - 72138 488 ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase 66 22 Op 7 . + CDS 72225 - 73700 1061 ## COG1190 Lysyl-tRNA synthetase (class II) + Term 73720 - 73768 7.1 Predicted protein(s) >gi|238617810|gb|GG669611.1| GENE 1 452 - 931 390 159 aa, chain + ## HITS:1 COG:no KEGG:LSL_1808 NR:ns ## KEGG: LSL_1808 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 4 118 7 113 171 84 44.0 1e-15 MCKNTRVNLMKKGNNKRYRFSGTFEKYGFKYTDRYRTHAAGTVLLIDIKDEDGIVVTDHL WFNLTKGFRSLGILSPGDVVSFNGRVKPYQKGYLGHRFGKTQSCTTDYKIDRPTKVTLER TNDKATREKFSTKNWTLCNQIYEMYKEDYQKRGIPKPYV >gi|238617810|gb|GG669611.1| GENE 2 1148 - 1657 170 169 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1624 NR:ns ## KEGG: Lbuc_1624 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain-containing protein # Organism: L.buchneri # Pathway: not_defined # 1 132 1 134 377 109 53.0 4e-23 MIGLTVTSPVKADQANLSDGTYTVPVTLLKAGSSSTSIANMFFTQTANVKVTGGTYQIQL QTNGADYITSVTVGGQSVSEDKSGSNANLTVNLTNPSDLVPVTFGLQVPLLGTMNQSAQF QFKWSSATRTQGSTPEAATNSSSSATASSNTTIHTGCNFFVRGKLNKFI >gi|238617810|gb|GG669611.1| GENE 3 1689 - 2303 436 204 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1624 NR:ns ## KEGG: Lbuc_1624 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain-containing protein # Organism: L.buchneri # Pathway: not_defined # 22 201 197 373 377 152 53.0 8e-36 MVPSTTSGSKKAVSKKSGYAWKYVVLKADSNAKSIANKYYTHTARVKKVNKHYNVLLKVS YKKALKLGSKAVRPVSINGRKPLSVTYGATAKTYNLTYSFNISSINRLKKIVAGKIHVTV PYANISSNFGIRLKFGHARVSKTGKKSSNHQSGAKAIANTVTTKPTPNEKLPQTGDDRGK STSIIGAVLGSGLLFAWGLNHETN >gi|238617810|gb|GG669611.1| GENE 4 2290 - 3132 527 280 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1623 NR:ns ## KEGG: Lbuc_1623 # Name: not_defined # Def: NEAr transporter # Organism: L.buchneri # Pathway: not_defined # 5 280 6 270 270 185 49.0 2e-45 MKLIRGKGFLIILSALFFFICLSTASNAKSISYKALLYGTNKTSMASGYFVKPATVRISH QKYVVTMQIKTAKSLSSFPVVVNWVNGEKPKNVRKAKDRAGNSHYYYSFTTTNLTKRINA KLAIDVPKVYKAHHLISFKFSTAGLPKLSQQGLTGTHKVKASYKHTTTTAPGKSAVVRPA SKRTQVKKSKVTSSPKINKANATQPKKLNHVTKHKQQPNKKGKQQVKPKKRPTQKAATKK SDKSPKAKTNHDKNHTPLVIGGVIAVIAAVGGGSWLVYKH >gi|238617810|gb|GG669611.1| GENE 5 3148 - 4053 661 301 aa, chain + ## HITS:1 COG:SA0980 KEGG:ns NR:ns ## COG: SA0980 COG0614 # Protein_GI_number: 15926717 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 39 293 35 288 292 216 42.0 4e-56 MKGSRKVGLIVLGLFAVIGIGLGLLFGFHSTNSKQSHPRIVATTYAVVQIADKLDLPLVG VPTTANKMPVRYKNVTRVGSPMNPNVEKIASLNPTVVYSVTTLKDQFGKAFSKRHIKPYF LNLTSVKALEKTVTNMGYRYHRVSKARAALEEINSAKNKAHTLAVHHQIKPKVLVLMGLP GASYMIGTNHSYVGNLVSLAGGKNVFPSKNQEYIQPNDEAIKKANPDVILRLEHALPKMV TAQFNQVFKSDSMWQTISAVKKHRVYDLQEPDFDATANMRAAIAINKVSRWLYPRDGGTA Q >gi|238617810|gb|GG669611.1| GENE 6 4050 - 5006 656 318 aa, chain + ## HITS:1 COG:lin2287 KEGG:ns NR:ns ## COG: lin2287 COG0609 # Protein_GI_number: 16801351 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Listeria innocua # 1 309 1 318 329 156 35.0 5e-38 MTKREIIWYSLAVLLLIVSIWVSLMMGATPFSSSQIFSAFSGHNDADLNILVQIRAPRIL ASLVCGGMLAVAGAISQSTFHNRLADPSILGVTGAGSFLILIAGFLVPAFPFDKMIYAFI GGGLTLLFLSSKSLLQNSFKLIIIGVALSLTFSGFQQLFSGDSLVGTSTFNGITWSDTLT LLITGVIGLVAAMILAPWANYLKMSDQQLALRGVSARFIRFWLLAVVVYLSSGATAEIGV IPFVGIIVPNISRYLVGHDYQTIIPLSMLIGSWLLLTIDTIGRTITLPGEIPAATIMTVV GGPFLVWMLWGQKFNEVR >gi|238617810|gb|GG669611.1| GENE 7 4990 - 5763 233 257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 225 1 228 245 94 28 2e-18 LMKLDNVSFSFHAGQPIIQNISADVVPGSILSIIGPNGAGKTTLLKLMANQLKPTSGQIS LNDQFLAKMTRKQLASKIAVVSQQNHLYDDMQVIDVVKMGRLAKHHLLATVEDKEVLPYL EMTRTSSLAHRAMSHLSGGQRQRVWIASAIAQEPQYLLLDEPTTYLDIRYQSDLMAVIAE LHKKKNMTIVMILHDINQAFKMSDQLWLIRNGRLIAQGAPSRYYDEKLLSDIFNISIHIV TIPNYGHYIIELPADSF >gi|238617810|gb|GG669611.1| GENE 8 5901 - 7541 1635 546 aa, chain - ## HITS:1 COG:lin2787 KEGG:ns NR:ns ## COG: lin2787 COG1252 # Protein_GI_number: 16801848 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Listeria innocua # 3 438 4 434 628 434 51.0 1e-121 MAKNIVVIGAGFSGVYATKKLAKRFKGNPDVHITLIDRHSYFTYMTRLHEVATERVEPDS IQYDLQRIFHKQKNVQLVTDNISEVDKEGKKVVGENGTYPFDSLLISMGGEPNDFGTPGV KENGYTLWSMEDAIALRDHINVIIRQGALERDPQKRQAMLTLVVCGSGFTGAETVGELID YKKVLARENKIDPSEIKIMLVEAAPTIINMLDRTNAAHAESYFKKNNVEIRTSSMITQVN SDSVEIKDQDPISTDTLIWTAGVKTNHVADSFGIEAGRGGRLVANKYLQAKGFEDKSIYV AGDNANATEEGAKRAVPQTAQEAENEAIVVSTNMAADIDGNQNYMEFKDKNMGFTVSFGA YYGIAQVFGGKRVRGWIATIMKHFTNIMYFMRIHSGYFMFKYILEEFFRVKNGRTVFGYN TSKRSNVLWSVPLRLFFGLALFLDGMANVNDSVSFLVTAHPGLGALEIVLGALIFLGLFT WLANLIVIILFFFAMLTWPTTWTLFVALALMNGSGRSFGLDYWFVPWLQKTWGRSRYGVP QSIYKK >gi|238617810|gb|GG669611.1| GENE 9 7896 - 9362 1040 488 aa, chain + ## HITS:1 COG:BS_cydA KEGG:ns NR:ns ## COG: BS_cydA COG1271 # Protein_GI_number: 16080927 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Bacillus subtilis # 6 460 1 444 468 452 51.0 1e-127 MLNIGLSVLGLSRFQFAMTTVFHFFFVPFSIGLAFIVAIMETVYVVKKDETYKNMAKFWG KIFLFSFAVGVVTGIIQEFQFGMNWSEYSRFMGDIFGAPLAIEALAAFFMESTFIGLWMF TWDRFNKVVHCLFIWLTAFGSTLSALWILAANSFMQNPVGYVINSQTHRVNMTSFSAVLT NRQLWNEFPHVIFGAFLTASFVVAGASAWRLLKKDHEHFYRKSLKVGLIIGLCACLGSIW SGDTQTRYLINNQPMKFGAMEGLYKNSTQKGDWALAQGNDTQNHKKTWSIEIPYVLNILS YHKLSGTVKGQNQVNKELKAKYDDTKQGQKIKNYYVPTKTLFWSFRLMAFSAGLFALIAI VGLWLNREKSNAIMRQRWFLYIMGLCLWLPFIVNTAGWFITEFGRYPWVVYGLLTIADAV SPTSTVLGLLFTNIVYFLIFASLGAVMIILSHRVLKSGPDSVMTDGYSSKPEKSSDKDPY EMGAAHND >gi|238617810|gb|GG669611.1| GENE 10 9355 - 10365 825 336 aa, chain + ## HITS:1 COG:L109201 KEGG:ns NR:ns ## COG: L109201 COG1294 # Protein_GI_number: 15672687 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Lactococcus lactis # 1 329 1 329 331 343 60.0 3e-94 MTNLQLLWFLLIGVLFSGFFFLEGFDFGIGMSIRFFAKDRDERDVVIQTIGPHWDGNEVW LITAGGAMFASFPMWYASLFSGYYIVLFLILVALIFRGVSFEFRANMQTDTWRNFWEWAA SISSFCAAFLFGMMFTSMIQGVPLDGQGNIFGSFTTYVNWFSLVGGVAVSLLCFIHGLNF LRLKTSGGLRERAQKWSRILYPVLLAGEVVFVILLFLTTDFFTKKPVTTWSILIALVIFT LIAWWGAIASHDWASFLASGLSLISVVVLIFNGLFPRVMIGKDNVNSILIKNASSSPYTL HLMTIITFSILPIVLIYFIWSYWVFYKRLSSPKQTA >gi|238617810|gb|GG669611.1| GENE 11 10564 - 12294 201 576 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 350 572 17 243 245 82 33 8e-15 MIDKRLLALPGMRRYLVILGILVFVQAVAIIVQARYLSVAIVNLWNLQPLKSILIPTVVF AVAFLCRHLLTVAQNRVFFPYVEKTSGEMREQLMSKIFHLGPAEIEKRGTGNIVTMALEG IDKVQTYLMLVIIKILNMSITPWLILLYILFLRWEQAIFLFIIFPVIILFMVILGLAAQS KADRQYEGYQRLSNHFVDTLRGLPTLKQLGLSKRYADNVFDVSESYRKETMSTLRIALTS TFALDFFTTLSIAVVAVFLGFDLLDGKVMLLPALTILVLAPEYFLPIRNFANDYHATLNG KNALSAVLEVLNEPEMNQTDELTDFKWQKDATLKFTKMAFTYPNADKPALKDVSVTIQGM KKIGIIGASGSGKSTLINIIGGFLAPDKKGQIEINGQSLPHLNQKAWQRNFLYIPQNPYL FHATLAQNIAFYVDHVTPESINHAARRAGLNEWVKTLPDGLDTMIGEGARTVSGGQAQRI ALARAFLDTNRKVLLFDEPTAHLDIETEAALKKDILPVFDNHLVFFATHRLHWISEMDYV LVIDHGQIVEQGTPEELNAKNGRYVKLRSEMGAAEL >gi|238617810|gb|GG669611.1| GENE 12 12291 - 14030 236 579 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 348 565 137 354 398 95 30 7e-19 MKQLRQTFAHDTWVMPYLRKYKGLLILVLFLGFMTFFSGGALMFNSGYLISEAARRPSSI IYIYVPVVLARAFGIARPVFRYVERLTSHNWVLRIVSDFRKKLYQTVERKASAIRRSHQT GDILSILADDIDHIENLYLRTVFPMVIGWLLYIFVVIGVGCLNWVVGLLLMLLLGIIVIV MPLTSVATNGVREFRQHQIQHQFYTNLTDEVLGLGDWLISGRYHDFMTLQKKPIDAIAAL RRKDHYYQWWRSFFVQVVVLLTTLVLLIWSGHSLTASKSLADWIAAFALAIFPAVSPFLN MSQGMSEWPVYRRSIERVNQLDQGNAKMDDQLRLSERFKELNIDHLTFKYPDGDRRVVND ISISVHSGEKIALLGPSGTGKSTFLKLMVGDLKPVSGQVTINGVPVSSLQRDRASLFGIL DQQPYLFNTTVMNNVRLGNINASDEDVKKALEAVGLKDLIESLPEKYQTHVQEAGKRFSG GERQRLSLARILLQDAPIIILDEPTVSLDPITERHLLDQVFDLLKDKTIIWVTHHLAGIG HVDQVRFLENGHFDMQGTPEALYKTEARFRQLYDLDRGK >gi|238617810|gb|GG669611.1| GENE 13 14493 - 15104 478 203 aa, chain + ## HITS:1 COG:SP1471 KEGG:ns NR:ns ## COG: SP1471 COG0431 # Protein_GI_number: 15901321 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 186 1 181 201 223 57.0 2e-58 MRKFIGLVGTNTTQSTNRQLLQFMKRHFEKQAELELIEVSGLPMFNKPQDMKVPERATEI AKKIDASDGVIISTPEYDHAVPAVLMNALEWLSYGIHPLLDKPVMIIGASFGSLGTSRAQ AHLRQMLDSPEISARVMPSSEYLVGHVLEAFDDKGDLTDKDKVEQLDALFADFQRNFGIR LRLTKKKFKNLVKKILIKRSAHL >gi|238617810|gb|GG669611.1| GENE 14 15101 - 16381 1311 426 aa, chain + ## HITS:1 COG:SP1472_1 KEGG:ns NR:ns ## COG: SP1472_1 COG0431 # Protein_GI_number: 15901322 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 184 1 184 187 233 58.0 7e-61 MKLVGIAGTVEDKSYNKILLQFIANNFSNLADIEILSIDDIPMFDQDNDQTESGAIQYLN RKISGADGVIIATPEHNHTITAALKSVIEWLSFKVHPFSNKPVMIVGASYYEQGSSRAQL NLRQILEAPGVNAIVFPGNEFLLANVKEAFDDNGRLKDEKTTAFLQTTLQKFLRFVKVIN TMNQATGGHDDAAGSEDLNSKGKISTTIEGVDMAADDWVEKAAEKVNAVEGNTYVKLDRG ILTVDQLNYFLNSMPIELTYADSNNQFIYYNKMTSTKKMLAPRRPGQVGDPLSLVHPKRA IQGVKSVIHALRTGKTDMVKMPVPGNGPDKYIMHFYKAMHDEKGEYVGINEFVLDIMPII KWYLNKTGQKLAADPNAKVDANTGASSKDDEAADNSATDADTSASTHDEPEASTGDTDAT TGASES >gi|238617810|gb|GG669611.1| GENE 15 16546 - 17523 824 325 aa, chain - ## HITS:1 COG:lin2790 KEGG:ns NR:ns ## COG: lin2790 COG0142 # Protein_GI_number: 16801851 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Listeria innocua # 2 324 3 325 326 225 36.0 9e-59 MVHRIWRQFPRIQLKLIQLEPYLLKAVTLSNQPVHSRILALLKSGGKLLRPGFFYIYSEF GEKIPADKLRAGAAAIELLHVATLIHDDVIDQSPLRRGVQTIHTQYGQKNAIYAGDYLFT CYFDQVLKSTHDATDLQRHIEAMQTILNGELDQMAFNYRQDMSQKDYFHEITGKTAELFK LSFEQSAILTHAPRNIVTLGGEIGLAIGQAYQIQDDILDYGGDSSQTKKPVLEDLQSGVY TLPLILANQTAGTQLAPLLGKKQDLKEADIKKIQKIVIKSGGLKRAHEIANQLTQKALAL INRLPEQNSKKELRRLTNLLLQREQ >gi|238617810|gb|GG669611.1| GENE 16 17734 - 20052 1589 772 aa, chain - ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 2 752 4 763 774 437 35.0 1e-122 MENKEQKKEQQRVDWVVSKIGTKMTSTENEYNRAHTETKKVQQTYSDNTSVNYFEVDDRI ETSAELQQQRGLVSRLTENESILKHQLSTMKDLQKSPYFGRIDIKDDDQSEDEKLYIGIA SFENDDGDFLVYDWRAPISSVYYNGTLGKVAYETPMGKQQTNLMKKRQFQIVDGQIRNMF DTNETVGDEMLQTALGAQNDDYMQNIVATIQHEQNDIIRDTKSNLLVVQGVAGSGKTSAI LQRIAFLLYHSRDTLEADQIILFSPNKLFSHYISEVLPSLGERNMRQVTFDEFIDNRLKG LNVQSLFDRYETDGQLTSQQKAIRAFKESADFMDAVEHYCNSLKPTDIKFSDIIFNESIF FSKHEIEQLFSSFPSAMKVPDRFLKTKNALIKRLKHRIVTETKADWVNEEIDQLSEEKYH DLLGTKRLRDFQNEDDERFFIAKKIVTARLQVVYDAIFNNNFLDPYVQYTAFLQRVDLPE TVNPVQWKQSISDFNQEIEFHSIKLDDCAPLLYMRDYICQSGQNNTMKYLFVDEMQDYSV AQLKYLKYAFPQTKWTLLGDSEQALFKDVEEPEEILNKLNNAFHVRHSRLISLMRSYRST YPITTFAKSILPNGDAIEAFNRDGDIPELIVSPNTNDATNQVLKVIADQRQKYATVAVLT KNMAEAKAVYGLIHSETGATLLKDADRTLPKGVLVLPIYLAKGLEFDSVIAWDTSEINYP EKSLLGTLYTIITRAMHHLTLISIGDVTPLITDDSLTNSKIKIEHTIKNKKV >gi|238617810|gb|GG669611.1| GENE 17 20625 - 21641 846 338 aa, chain + ## HITS:1 COG:L0358 KEGG:ns NR:ns ## COG: L0358 COG0180 # Protein_GI_number: 15672048 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Lactococcus lactis # 1 337 1 340 341 454 66.0 1e-127 MAKKIILTGDRPTGKLHIGHYVGSLKNRVELQNSGDYDTFIMIADMQALTDNARDPEKIR HSLIQVALDYLAVGIDPEKSTILVQSQIPALPELTQHYSNLVTVSRLNRNPTVKNEIKQK NFGQSVPVGFEMYPISQAADITAFKATTVPVGDDQEPMLEQTREIVRSFNSIYKADILVE PEGYFPPKGMGRIPGLDGNAKMSKSLGNAIYLSDDEDTISKKVMSMYTDPNHIHVEDPGQ VEGNTVFTYLDIFDPDQSKVAELKAQYQHGGLGDVKIKRYLNDVLQAELKPIRERRNQYE KDIAGVYDILKKGSEYANTVANQTLKEVRDAIGINYFG >gi|238617810|gb|GG669611.1| GENE 18 21665 - 22594 642 309 aa, chain + ## HITS:1 COG:CAC0621 KEGG:ns NR:ns ## COG: CAC0621 COG0248 # Protein_GI_number: 15893909 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Clostridium acetobutylicum # 1 299 1 298 499 171 32.0 2e-42 MQNLVILDIGSNSVRMAINQILNDGSYREIKRVKSDSRLSEGMGKAKVLQPQAMERTIQA LADFKAIYQQYRSDSVIGIATAAVRQAKNQTDFLQAVKKRIGITIRVLSGVQEAYYDYLG VINRLGIKNCLILDIGGASCELIRVVNGQSKNLTSIPIGAVNISEQFHLNDNVSGANLFN AQFHIQKLYSRIKWLKHSQREPLVLLGGANRTLARINRTRQGMKRVDSIHGYHLSYEQVN RTYLNLLRGDVKRRRQIKGLEHDRADIIVGGLLPLMVLMDKVDTRKVLFSESGVREGIIT EFVENKSEH >gi|238617810|gb|GG669611.1| GENE 19 22703 - 23953 1058 416 aa, chain + ## HITS:1 COG:lin0821 KEGG:ns NR:ns ## COG: lin0821 COG1257 # Protein_GI_number: 16799895 # Func_class: I Lipid transport and metabolism # Function: Hydroxymethylglutaryl-CoA reductase # Organism: Listeria innocua # 8 415 7 423 426 328 43.0 1e-89 MDARWAHFYQKSYRERLDLIADFSGLNSDQVALLKTTNAKVFGHLIENYLADYALPEGIV TNMKVNNRQYLVPMVTEEPSVIAAASNGGKLLSGDMGIKASVKQRLLSGQIILKDISDAR QLREFISDRQQELIEIANNSRPRILKHGGGAKSLSVRRLDPQFYSVDLQVDSGEAMGANL VNTMLEAVANELRSFGLQVTMAILSNYADKSLVHVLGKIPLSELTTSGITGQQVASQIVD ASHIAQVDVYRATTHNKGIMNGIDAAVMATGNDWRAVESAAHAYAAKDGQYKGLSTWRVN QAYLIGKMTIPMPIGFVGGATSVLPMAAINKKITRIKRVREMMEVIGAIGLAQNLAALRA LVTDGIQKGHMNLQLKSLAMANGTKESELPTVVKQLRHMTSPDSTDVKKILKELRK >gi|238617810|gb|GG669611.1| GENE 20 23963 - 24934 794 323 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1607 NR:ns ## KEGG: Lbuc_1607 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 323 1 323 323 522 80.0 1e-147 MDNEINIELNDQVHSLIDAVNNFFPGTVTVNFLGKLQSGYVRHDQSQVVQDGKNIMIQIA DLSAPNYTASHELLHLLMVLRGFPQVFFSLTTGNADLDDQLKMMGTELYDMVSHFVVVSE QRKHGLIDDEIEAMYMKGVYATIKPEPDPVDDQMTLRLMTLLDAMVFYGDRFSQVADKLK KDFPISLAAAEKLYQLITEKPTDSPFGLRRNVVKLFKAFDEQMKQWALPPLHNTEFTTLT SVLSKRQLGLQVKQLFEVFHSELIEVNSNTRAYVGFNRVDDQNSFVLANPKGEQDNPEFF QEIYGKTVKALFDSLKMPYIERK >gi|238617810|gb|GG669611.1| GENE 21 24964 - 25692 662 242 aa, chain + ## HITS:1 COG:lin2882 KEGG:ns NR:ns ## COG: lin2882 COG0846 # Protein_GI_number: 16801942 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Listeria innocua # 13 234 11 229 229 252 55.0 5e-67 MIDQKIQTMFDTAKKIVFLTGAGVSTASGIPDYRSKNGLYTNDKTDKPAEYYLSVDCLRD EPKVFYQYEKSNMYYPDAKPNVIHDRQAEFTQKRDAVVVTQNIDSLYRKASTKNLVEFHG NLYNVYCQKCRKKVDYKDYLNSMYHRNCGGVLRPDIVLYGEGLNPNAISKSIKAVSEADL IVIVGTSMRVYPFAGLIDYRPQNARVLAVNEEQLSFTFPFTMIKQNAVDFFDDLNVNVSS KN >gi|238617810|gb|GG669611.1| GENE 22 25718 - 26566 487 282 aa, chain + ## HITS:1 COG:lin2505 KEGG:ns NR:ns ## COG: lin2505 COG1801 # Protein_GI_number: 16801567 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 282 2 279 281 244 45.0 1e-64 MITIGLTTFSEHPSLIDDSKRKVRLSEYSAHFPVVELDTPFYGIPRTEVIEHWQQQVSDN FQFILKANQVMTMHDQGSGDPVSNEERFTKFNEYKRAITPLVRAGQLKTILFQFPPYFAR KVETIEYLRRISIFMEGYPVSVEFRNPSWYGKNIIDDVAGYLKELGLDLVVVDEPHTTNM GVPFEPLVTNKDLCMLRLHGRNIKGWTDTTGDWRGKRTLYRYSTEELARLKDVVLKLQDQ TREVCIIFNNNAGRDAADNALELKKMLGISFGGLSPLQMDLF >gi|238617810|gb|GG669611.1| GENE 23 26747 - 28774 1722 675 aa, chain + ## HITS:1 COG:L0353_1 KEGG:ns NR:ns ## COG: L0353_1 COG0143 # Protein_GI_number: 15672774 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Lactococcus lactis # 1 534 1 531 540 741 65.0 0 MAESKPTFYITTPIYYPSGRLHIGNSYTTIACDAVARYKRAMGYDVFFLTGTDEHGLKIE QKADKLGMTPQAYVDKMAKGIKELWKKLEISNTKFIRTTDDYHERAVADIFQQLQDQGDI YLGEYTGWYSVSDEEYFTESQLAEVYRDDDGKVIGGKAPSGHEVQLVHEQSYFFKMSKYA DWLRQYYQDHPDFIQPSTRMNEMIKNFIDPGLEDLAVSRTTFHWGVPVKSDPKHVVYVWI DALSNYITALGYDGKDDSDFKKYWPADVQMVGKEIVRFHTIYWPIILHALGLPLPKTVYG HGWLLMKDGKMSKSKGNVIYPETLMDRYGLDALRYYLLRAMPYANDGIFTPEDFVDRVNF DLANDLGNLLNRTVSMINKYEGGIIPEFKAGVNEADKELEEVSKESIAGFKKSMDDLHFS EALSEVWKLVSQSNKYIDQTEPWVLAKNDADKEKLASVMSHLAASLRVIAELISPIMTHA PKEIFQQLGLDEAIDIKNLDISDLPAGAKTVAKGTPIFPRVDVDEEVAFIKDQMTTNTKA KGRAAMKAAAEKKFDPEETELKLTKKEVRFDAFEKIELKVAEILDVKKVEGADKLLQFRL DAGDDGDRQILSGIAQWYPDYQKLVGKKVIIVSNLKPRKMRGQVSQGMLLSVEHDDGNVE LVTVDSHLENGLTLE >gi|238617810|gb|GG669611.1| GENE 24 28866 - 29651 651 261 aa, chain + ## HITS:1 COG:L87336 KEGG:ns NR:ns ## COG: L87336 COG0084 # Protein_GI_number: 15672669 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Lactococcus lactis # 1 256 1 256 257 256 47.0 4e-68 MKIFDSHTHLNDDHLYSQADRYAEHAKSLGVVKLANVGSNQVLNDRSLALSAKYNDMYSI IGWHPEDSIHFHDEQKQLLIEQLQSPKVIAVGEIGLDYYQTTSPRSIQKRVFKEQIDIAK QLHLPISVHNREAFEDTYEILKEMDIHDIGGVMHSFNGDPEWLKKFLDLGMSVSYSGVAS FKKNHDVHDAVRNTPFDRMLVETDAPYLAPEPLRGKQNEPAYTLYTVEAIARLCDVNPDV IAAHTYSNALRLFGIEDNEKN >gi|238617810|gb|GG669611.1| GENE 25 29638 - 30195 573 185 aa, chain + ## HITS:1 COG:BS_yabF KEGG:ns NR:ns ## COG: BS_yabF COG1658 # Protein_GI_number: 16077109 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Bacillus subtilis # 3 181 2 179 186 177 56.0 1e-44 MKKIKEVIVVEGKDDTKQILRAVDADTIETRGSAIPDETMALIKKIAETRGIIVFTDPDF SGEKIRKTISAEIPNAKHAFITKKQGVPKRSEGSLGVEHASVEAIREALSHVYTEDDQTE ELISRETLMKFGLMGYPDAKQRREKLGELLGIGYVNGKQLQHRLRMFGISQQQFLDAVEK IDGDK >gi|238617810|gb|GG669611.1| GENE 26 30197 - 31087 742 296 aa, chain + ## HITS:1 COG:lin0227 KEGG:ns NR:ns ## COG: lin0227 COG0030 # Protein_GI_number: 16799304 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Listeria innocua # 6 287 4 286 295 268 48.0 8e-72 MSDYPEIASPARTQAILNRYRLSAKKSLGQNFLIDLNILNNIVEAAELTKNDNVIEIGPG IGGLTEQLAKAANQVLAFEIDEKLLPVLDETLSPYNNIEIINQDILKANLPEVVAKRFRT DKPLKVVANLPYYITTPIVMDLLANPVKFESIVVMMQKEVAERLDAKPGTKPYGSLSVIV QQQNDVDISFVVPKTAFIPQPKVDSAIVKLSPKMQVDKRPFDHKKFVGFVRGCFMHQRKT LWNNLLGVFGKQESVKGQIKKVLDDLSINAANRPEQLQVEQFVALTNAFHEIGVLK >gi|238617810|gb|GG669611.1| GENE 27 31175 - 31423 186 82 aa, chain + ## HITS:1 COG:SA0452 KEGG:ns NR:ns ## COG: SA0452 COG4466 # Protein_GI_number: 15926171 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 79 1 79 87 82 50.0 2e-16 MPITLSVIKHRMDDHIGQHVLVTSQIGRRKTTKRHGILRETFHAVFIVELDPGKSSFERV SYSYTDILTKNIAVNFDDEQVD >gi|238617810|gb|GG669611.1| GENE 28 31727 - 32500 470 257 aa, chain + ## HITS:1 COG:SA0453 KEGG:ns NR:ns ## COG: SA0453 COG1947 # Protein_GI_number: 15926172 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Staphylococcus aureus N315 # 1 250 31 280 282 233 42.0 3e-61 MTSIGLSDYVQVETNDTNTIKVYSDSGFLPEDNRNLAYKAAQIFLKETRIQTGLKILIEK NIPIAAGLGGGSSDAAAVFKALNNLFDVGLSLEALAKMGLQVDSDVPYCIYGDTALVSGR GEIITPLNKLPKMWFILAKPHVSVSTPRILKKLARTPVIHPNTDELLRGIADNDYSAIIS NMGNALEAITIAEHPQILTLKQRLIRYGCDGSQMSGSGPTVFGVCRTESRARRVYNSISG FCSEVYLTQVTSEKINQ >gi|238617810|gb|GG669611.1| GENE 29 32657 - 33340 174 227 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 192 1 197 311 71 27 1e-11 MSDTLISAENLSLSFPNHQVLSKLSFKVNRGDFLGVIGENGVGKTTLVRLILKQLRPSSG KIILKEGLKIGYVPQFRNIDVEYPLSVRDFVSLSYTGIKLPWLSKKERTRVGEVMNRVGL TAISDRPLGLASGGEKQKAYLAQALLNHPDLLILDESTASLDPNTKKELLDVVTMLNNDM GLTILFVSHDMQLIHEYPDRYLWLRRDGYSTGAISDLHNDSKGELYV >gi|238617810|gb|GG669611.1| GENE 30 33333 - 34136 785 267 aa, chain + ## HITS:1 COG:CAC2878 KEGG:ns NR:ns ## COG: CAC2878 COG1108 # Protein_GI_number: 15896132 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Clostridium acetobutylicum # 1 238 4 240 268 103 29.0 2e-22 MFSFEFMQNAYLAGTLIAIVSGIMGVFVTARNMPFMTHTLSEIGFAGAAFGIFIGWTPLN GMLTFTTISSILVGELSGKVESRREAVISAISGFFIGLGILFLSLSNKNSSYATNILFGS VIGISRQDVLQMVVLSVIVLLILFVIFRNLKDDSFDPVGAQTNHVHSSLISIIFLVLLAF SVSVAAQIVGSLLIFVLLTLPAASAKYFTHTVLKMMMLGIAFALFGVWFGLYLGYVTNWP VTFFIATIEAGIYAISLGYNYLQSRSE >gi|238617810|gb|GG669611.1| GENE 31 34278 - 35063 723 261 aa, chain + ## HITS:1 COG:lin0231 KEGG:ns NR:ns ## COG: lin0231 COG0503 # Protein_GI_number: 16799308 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 245 12 256 272 289 57.0 3e-78 MTRYLLERPHTLVPLTFFADRYDSAKSSISEDLTILKRTFQARGTGLLETIPGAAGGTRF LPYILKEEAQQVVGKLIDEMSSDKRYLPGGYVYMSDLLGSPATLRQIGRIFATQYLNQDV DAVMTIATKGVPIAQSVANFLNVPFVIVRHDTEITEGSTVNVNYVSGSSTRIEKMSLSKR SLKPDSNVLIVDDYMRGGGTIGGMISMVEEFDANLIGVGVVAESTVQSGRVVEDYTSLMR VDAENNTVVSQAGNYLEKIFN >gi|238617810|gb|GG669611.1| GENE 32 35089 - 36465 1201 458 aa, chain + ## HITS:1 COG:lin0237 KEGG:ns NR:ns ## COG: lin0237 COG1207 # Protein_GI_number: 16799314 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Listeria innocua # 1 457 1 457 457 523 57.0 1e-148 MATKNTIILAAGKGTRMKSKLYKVLHRLCGKTMVDHVLTQVEKADMDNVVTVVGFGADAV RDNLGKRTQYVVQEKQLGTGHAVLQAEDLLGKLDGMTMVVSGDTPLFTAHTFENLFTYHE NKKAKATILTSNAPDPTGYGRIVRNNLGIVEKIVEQKDASTEEQAIHEINTGVYVFDNQA LFEALHKINNDNAQGEYYLTDVIEVLKSEGETIAAYQMSDFDESMGVNDRVALARATKIM QTRINRQHMQDGISMIDPERTYIDTDVKIGSDTVIEPGVQLKGSTTIGHDCYLGANSEIR NSTIHDHVTVTSSLIQDSEMLDYSDIGPNSHLRPGALIGKHVHLGNFVEVKKASIGEGTK VGHLTYVGNAKLGKNINVGCGVIFVNYDGAKKHETTVGDDAFIGSNSNLIAPLEIEDHSF IAAGSTINRPVNKYDMAIARSRQTNKPGYFKKLPYQKD >gi|238617810|gb|GG669611.1| GENE 33 36516 - 37508 904 330 aa, chain + ## HITS:1 COG:lin0238 KEGG:ns NR:ns ## COG: lin0238 COG0462 # Protein_GI_number: 16799315 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Listeria innocua # 5 321 1 317 318 436 69.0 1e-122 MEDHMARQYFDSKLKIFALNSNRPLAEKIAKTVGVPLGKTSVDRFSDGEIRINIEESIRG DNIFIIQSTSAPVNDNLMELLIMVDALRRASAGTINVVIPYYGYARQDRKARSREPITAK LVANMIQKDGVDRVVTLDLHAAQIQGFFDIPVDHLMGAPLLADHFIKEGFGSDDVVVSPD HGGVSRARALAEFLKAPIAIIDKRRPRANVAEIMNIIGDVAGKRCLMIDDMIDTAGTITL GAQALIDAGAKEVYACCTHPVLSGPAIERIRKSPIKQLVVTDTIQLPADKQIDKIQQVSV GPLIGDAIKRINENKPVSPLFNNRFRGDND >gi|238617810|gb|GG669611.1| GENE 34 37508 - 37879 335 123 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1593 NR:ns ## KEGG: Lbuc_1593 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 121 1 121 123 161 68.0 1e-38 MNDLIKQKPATMGIALAAIINLVTIVIGLPMMGIGNIDFLVGLFLLVLASIFIVGSGHLF TGWRFSFRKKSDLEAENAPKHPAAKDVASIKNQPIKVNKYAHFCLRVGVFLIVLGIVLTS IAP >gi|238617810|gb|GG669611.1| GENE 35 38881 - 39687 795 268 aa, chain - ## HITS:1 COG:STM3831 KEGG:ns NR:ns ## COG: STM3831 COG0561 # Protein_GI_number: 16767116 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Salmonella typhimurium LT2 # 1 268 1 269 281 233 43.0 2e-61 MDIKLIAIDIDGTLLNEKNHLAQPTIDTITAARQKGIKVVLCTGRPLSGVKPYLDALSIS GADEYAITFNGAMSQSLDGKVITHQTLTYDEFLETEMLARKLGVHYQFETMDAIYAFNRD LSPYSVGESYLVRLPIKYRTPEEIKPDLVISKAMFVDFPKLITTANNQLPQSLRDQMYVV QSEPFFIEIMNKKASKGNALHALATDLGFSAENVMAIGDQGNDLTMIKYAGLGVAMENGI DDVKEAASFVTKSNAENGVAYAIKKWIL >gi|238617810|gb|GG669611.1| GENE 36 39709 - 41043 776 444 aa, chain - ## HITS:1 COG:SPy0621 KEGG:ns NR:ns ## COG: SPy0621 COG1078 # Protein_GI_number: 15674697 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Streptococcus pyogenes M1 GAS # 11 440 3 427 433 489 58.0 1e-138 MDYAHQQLKREKVFRDPVHNYVYVKYQVILDLINTTEFQRLRRVHQLGTTSLIFHGAEHS RFAHSLGVYEIARRITESFQKNFPSIRPGDGLWDNSEELVVLCAALLHDIGHGAYSHTFE HIFGTNHEQITQDIITSESTEINHVLQRISPDFPRQVASVINKTYPNRQVVEMISSQLDA DRMDYLLRDAYNTGVKYGTFDLSRILEVMRPYKEGICFEMSGMHAVEDYIVSRFQMYQQV YFHPVSRAMEVVLNRLLKRARVLFGATTQNEPSTPYLLLPFLRGDFNLDDYLQLDDGVLN TYFIHWKRYPDDILSSLATRFIDRKPLKSVKYDKSTENLLPRLREIIEQSGFNPEYYTAT DNSFDLPYDAYTPGKKQIELMQDDGSLVDLSSVSPLVTAISDRQTGDNRFFFPREVLRPE KNVDLFEPEYEEFKSHIRNGKLIN >gi|238617810|gb|GG669611.1| GENE 37 41065 - 41892 611 275 aa, chain - ## HITS:1 COG:lin2711 KEGG:ns NR:ns ## COG: lin2711 COG0095 # Protein_GI_number: 16801772 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Listeria innocua # 40 215 48 224 278 145 41.0 6e-35 MSFTNTPITVIKQAYSPANKLISFADTNALLDYCDQFQRPFIHFWTTDQPTLILGINDRH LPNLTAGLQNLTANKYDYFLRNSGGLAVISDPGVLNISLFIPDADRKLDVDDSYDIIADL MMATFPTLSIQTFEVTHSYCPGKYDLSVNGQKIAGIAQRRSKGAVVLMLYLSVEGDQDAR SNVVSEFYQAGDAYSQTRWAFPKVDKTTMTTVEKIGFPNIDLLTVEQHFLKSVSQQMMSL DLDSQAQLFRSDTFIDLRKKQLRKIQLRNQQLPLI >gi|238617810|gb|GG669611.1| GENE 38 42065 - 42499 324 144 aa, chain + ## HITS:1 COG:BS_ywiB KEGG:ns NR:ns ## COG: BS_ywiB COG4506 # Protein_GI_number: 16080787 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 9 142 6 136 142 58 26.0 5e-09 MDNLATGVPVQIHLETNILQNGETSNFVFDATGQLVRVGTSIYIRYQEETDDGSVPVTIK LMENGDVKLTRSAGNRLQLIFSAGKRIAARYATPYGQLEVQTVTSSLDMEILNQPLRGKV GIDYLLYAGSDLLGKYNIRLQFTI >gi|238617810|gb|GG669611.1| GENE 39 42589 - 43188 651 199 aa, chain + ## HITS:1 COG:SPy1895 KEGG:ns NR:ns ## COG: SPy1895 COG3343 # Protein_GI_number: 15675708 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 153 16 165 191 87 49.0 1e-17 MIEVAHAILAKRGDTMPFADLANAVQAYLGDSNKEIRDRLSQFYTDLNVDGSFISLGDNL WGLRTWYPYESIDEATVHAEDEDEDRPKRKKRKKVNAFLADASDDDDVIDYDDDDPEDDD DFDDDDTEDDDDDEDTTASSEDLGKYNKDLQDIEDNTDDPDDSDLPDGIEGQLNELGDDD DDFDDDDDDDNDNFDSKKK >gi|238617810|gb|GG669611.1| GENE 40 43365 - 44984 1572 539 aa, chain + ## HITS:1 COG:SP0494 KEGG:ns NR:ns ## COG: SP0494 COG0504 # Protein_GI_number: 15900408 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Streptococcus pneumoniae TIGR4 # 2 529 3 530 535 775 70.0 0 MTKYIFVTGGVVSSLGKGIVAASLGRLLKNRGLNVTIQKFDPYINVDPGTMNPYQHGEVF VTDDGTETDLDLGHYERFIDNNLNKYSNVTTGKIYDEVLRKERHGDYLGATVQVIPHITG MIKEKIMRAAKVSDAEIVITEIGGTVGDIESLPFLEAIRQMKTEVGDENTFYIHTTLVPY LHAAHEMKTKPTQHSVKELRSLGIQPNLLVVRSEKPITDSMRKKISLFCDVKPQAVVESL DVPTLYTIPLNLQKQGMDQQILDHFGISKPAADMEEWKELEHHVQHLKRKIHITLVGKYV GLHDAYISVAEALKHAGYKVDADIDLEMLDSEKITPENVDELLAPADGIIVPGGFGDRGI EGMITAIRYAREKDVPFLGVCLGMQMACVEFARDVLGDKDANSTEMNPRTQHNVIDLMAD QEDVHDMGGTQRLGAYPCKLKPGTVAAAAYNNADVISERHRHRYEFNNAYRKPMEDNGMV ISGTSPDNHLVEVVEIPANKFFVGSQYHPEFISRPNRPEGLFKNFVAAANDQYLSKNKK >gi|238617810|gb|GG669611.1| GENE 41 45252 - 46538 882 428 aa, chain + ## HITS:1 COG:SPy1358 KEGG:ns NR:ns ## COG: SPy1358 COG0766 # Protein_GI_number: 15675291 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Streptococcus pyogenes M1 GAS # 1 424 1 419 419 428 57.0 1e-120 MSKLIVNGGNRLSGEVSIGGAKNSTVALIPAAILADTPVRFDSVPDILDVHNLMLILKSM NVSSTFKGDILTIDPTNIVEAPLPSKAIKSLRASYYFMGALLGRFQRAVVSFPGGDNIGP RPIDQHIKAFKALGAEVSEVDGTVTIKTGPDGLHGAQIFLDIVSVGATINTILASVKAPG TTIIGNAAKEPEIIDIATFLNNMGANIRGAGTDVIRIEGVPTLQAKNTHTIIPDRIEAGT YLSLAAAMGDGVLITNIIPEHLESFVAKLEEMGCDLTVYEDSVYVGPSHNLKPIQIKVMP YPGFATDLQQPITPLLFKADGQSMIIDTIYPQRIKHISQLNKLGGNIKSKDTEEGIIVVN KSPHLTGAKVDAGEIRAGASLLIAGLMANGTTEIAHAENIMRGYGSLVNKLTGLGADVKL KIEDEERV >gi|238617810|gb|GG669611.1| GENE 42 46641 - 46892 447 83 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509291|ref|ZP_03939340.1| ribosomal protein L31 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 83 1 83 83 176 100 2e-43 MKKGIHPDYHQVVFQDSSTGFKFLSGSTKTSDETVEWEDGNTYPLIRVEISSDSHPFYTG KQKFTQADGAVDRFNKKYGLKND >gi|238617810|gb|GG669611.1| GENE 43 47045 - 48193 936 382 aa, chain - ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 1 382 17 398 402 371 51.0 1e-102 MAGIGFSEVMPFLSLYVDTLGNFSHDQLSLYSGFAFAATYLVTALASPFWGKLADRTGRK LMLVRASAGMAIVFFLMGLVTNVWELIGLRLLQGVFSGYISNANALIATQVPKSKSGQAL GTLVTGNVSGTLLGPLLGGILASLFSYRVTFFITGFLLLSVFFLTLFLVHEDFKPVAKTM MLSTRGVIKRLTNSKLVFGMFITTMIIQAANNSIAPILALYVRQIMHNSATTTFYSGIVA AVPGIATLVAAPMLGKLGDRIGTDRIIIIGFFLAIVVYIPMAFVTNIWQLIALRFLIGIA NASMLPAVQAILAKNTPFEVTGRVFSWNQSFQAMGNVAGPMIGSVISSEFDYAGVFISTA VLVVLNLILVYNNTRVMRKNRA >gi|238617810|gb|GG669611.1| GENE 44 48329 - 49048 389 239 aa, chain + ## HITS:1 COG:L125196 KEGG:ns NR:ns ## COG: L125196 COG3764 # Protein_GI_number: 15673095 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Lactococcus lactis # 10 233 54 277 287 147 39.0 2e-35 MKKNLLKKSIINIIFGLLVIVALVLIFNRPIKNKVIGSYQPKVTRQEVAATNRRTQKKSK RHQQNVSYNFKKVKSLDFETALRSRLNSQQIEQAGQILIPKSGIHLPIGLGVSNSTLALA AGTMRANQKMGRGNYPLAGHHMVNRKILFGPLYFKTRVGQTIYLTDMNRVYQYQVYQRAF IAATRVDVIKQTKKPIVTLVTCDATGKGRLLIRGRLVKTFKLRDATQKIKRALLRPANS >gi|238617810|gb|GG669611.1| GENE 45 49045 - 49512 415 155 aa, chain - ## HITS:1 COG:lin0937 KEGG:ns NR:ns ## COG: lin0937 COG0394 # Protein_GI_number: 16800007 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Listeria innocua # 1 150 1 149 152 119 38.0 2e-27 MTNVLFVCLGNICRSPMAEGLFKKLISDQNLQAKINVDSAGISDEEEGNQPHPGAQAEMA KHGLDISNLRSRPITTADFHWADLIIGMDSQNIYYLKQMADSSDQKKIHLCLDIVEKEAG QDIPDPWYDHKFGRTYQQLSRALPKWLDYVKSNLH >gi|238617810|gb|GG669611.1| GENE 46 49660 - 50427 481 255 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1579 NR:ns ## KEGG: Lbuc_1579 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 6 255 2 251 251 385 77.0 1e-105 MKGNFIFINTNPISNMILSSGITAADYVNGLDELPDNIILLNSDEDAANGYNSHSRFNLI TGAGEIRRYLLRNPSKQKKFIDFNDEDSVNGLSPFEIAELLYLGHMGTPMGRPFSSKLLN HYIYLNLGNGATRTYYRRFSDVNHVLEIALKRNLREIHNTLRVFLRPLAIKDVDNSILIK LITRANDGLFIVFGALREKNRVYHIPLRVLKDPDQVSIILKTKEIEINTDYVGDLTYDLQ HSKWDLQWHSQATDV >gi|238617810|gb|GG669611.1| GENE 47 50487 - 51869 1022 460 aa, chain + ## HITS:1 COG:L141766 KEGG:ns NR:ns ## COG: L141766 COG0770 # Protein_GI_number: 15672324 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Lactococcus lactis # 1 458 1 440 440 340 44.0 3e-93 MKMTIGEIVKAINASIENETDKILQTEVNGVCFDTRRLTPGQLFIPLSGAHDGHDFIENA IKGGAVATLWASDHTDRLPVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTT TKDMIASVLSGEFNVTKTYDNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQLDFLSKL VEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKADGYFIYDGDEPLLIERAKQVDF SKMTFGRSHTDDVFATKTSDGQYNTSFEVNLWPDKKVTIPMMGDYNVNNALAAITVGKLF QIPQIEIIQKLSHFDLTKNRTEWLTGNKGEKILSDVYNSNPTAAREVLTAFSQTDVMGRR IVVLGDMLELGDKSPQMHASLANDIDSNEIAAVYLVGKDMQALYEKLKPVFAPENLHYYQ ADQLDQLSDDLKRDIQPNDEVMLKASHGIHLENIVEKLTA >gi|238617810|gb|GG669611.1| GENE 48 52072 - 53580 1328 502 aa, chain + ## HITS:1 COG:lin0859 KEGG:ns NR:ns ## COG: lin0859 COG0513 # Protein_GI_number: 16799933 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 2 436 3 439 516 540 62.0 1e-153 MKFSELGLSDSLLSAISSSGFEEATPIQAETIPMVLNGEDVIGQAQTGTGKTAAFALPIL QHLDFNNPNVQALIISPTRELAIQTQEEVYRLGKDEKAKVQVVYGGADIRRQINSLKSHP QIIVGTPGRILDHISRHTLKLEHVKTLVLDEADEMLNMGFLDDIESIIKQTPSDRQTLLF SATMPPQIKRVGVQFMKDPHQVKIKAKELTTDLIDQYYVRVKEYEKFDTMTRFFDVQDPE VTIVFCRTKRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIMNEFKQGKVDILVATDVAA RGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFTTPNEMDYLHEIEKLTKV RMLPLKPPTEQEAFVGQLNNAESDIGELIKRTNTEKYEKMADKLLDEYEATDLVAALLND VTRDYVKVKITPERPLSRRHHGSGGRRNSNNHRGGGHWNNRRNDDRNSSRNRNRRSNGGN RDRKRKDDRHSNSKHRFTIKNK >gi|238617810|gb|GG669611.1| GENE 49 53711 - 54079 377 122 aa, chain + ## HITS:1 COG:SP1699 KEGG:ns NR:ns ## COG: SP1699 COG0736 # Protein_GI_number: 15901533 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Streptococcus pneumoniae TIGR4 # 1 116 1 115 120 108 45.0 3e-24 MIAGLGIDITDIYRIKAAIAHNAHFVARILTASEIEQLTDFSEKRKVEYIAGRFSAKESY SKAFGSGLGSAVRFHDLTIIDDSKGKPIVLEHPFNGKAFVSISHTDDIVMTEVILERVED KK >gi|238617810|gb|GG669611.1| GENE 50 54076 - 55200 1012 374 aa, chain + ## HITS:1 COG:L0103 KEGG:ns NR:ns ## COG: L0103 COG0787 # Protein_GI_number: 15672826 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Lactococcus lactis # 1 373 1 366 367 353 47.0 4e-97 MTVGTLRNARLIINQKAIYNNVKNAVTHTQSGTDLFVVVKANGYGHGAVQVARIAENAGA KGFCVALLEEGLELRQAGFTEPILVLGITEPTFAPIARDSHISLTVSSEEWLKTAGIILN QQDSKEKLHVHLAMDTGMGRIGFQTPDELQEAMLVLKKYQDTFDFEGIFTHFATADSKDD TYFQYQYENYQKMLAVVDKRPKYVHVANTATSLWHKVCGANMVRYGISTYGLNPSGKEIT RTPYTLFPAMSFQAGLSYVKKVPKGKSIGYGATYQTKEDEWIGTVPIGYADGFPRKMQGF SVLVDGQYCPIVGRVCMDQFMIKLPKQYGTDTVVTIIGKSGAHEITVDDIADQLGTINYE VVCGFSERLQRKYV >gi|238617810|gb|GG669611.1| GENE 51 55273 - 55557 303 94 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1574 NR:ns ## KEGG: Lbuc_1574 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 93 1 93 94 154 82.0 1e-36 MEKATNHKQFSVMINDQVADRLDQFCTNVGISESAAVEIAINYFFDDPKVISGLMNGYRE MATLNREISHDFSCCEEDADVHLAQYRRRLRNFY >gi|238617810|gb|GG669611.1| GENE 52 55576 - 55953 300 125 aa, chain + ## HITS:1 COG:lin0887 KEGG:ns NR:ns ## COG: lin0887 COG2337 # Protein_GI_number: 16799960 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Listeria innocua # 10 121 1 112 115 162 72.0 2e-40 MMGGVRVTDVIFKRGDIFYADLSPVVGSEQGGMRPVLIIQNDIGNHYSPTVIVAAITARI SKPKMPTHVGISANNGIERDSVILLEQIRTIDKQRLKDKVTHLNNSTMAKVDKAIRISLG LGKNA >gi|238617810|gb|GG669611.1| GENE 53 56267 - 56911 574 214 aa, chain - ## HITS:1 COG:lin0562 KEGG:ns NR:ns ## COG: lin0562 COG0517 # Protein_GI_number: 16799637 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 211 1 211 211 236 54.0 2e-62 MLLKTLVKPKERLVTVKEDATLEEALKVLEDSGYRCVPILDETGSIFRGNIYKMHIYRHK SRGGDMSLPVTTLLKNATKFVNVNSAFFQVFFSIKDLPYIAVLDAQNHFYGILTHTRLLD MLSQSWNVNIGSYVLTVVSSGERGDLEEIAKIITKYTNIASVISLDAQEGELVHRIMFTL PAEVDQDRLNRIIAALERKEFRVPEVENLKEENK >gi|238617810|gb|GG669611.1| GENE 54 57134 - 58090 955 318 aa, chain - ## HITS:1 COG:lin0242 KEGG:ns NR:ns ## COG: lin0242 COG0039 # Protein_GI_number: 16799319 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 7 318 3 312 313 352 54.0 5e-97 MIILALERQKVALIGDGAVGSSYAYAMMQQGLAEEFVIVDVVKERTVGDALDLEDAQVFT SPKHVYSGDYEDCHDADLAIITAGAPQKPGETRLDLVNKNLKIMQAIIKPLVASGFKGVI VVAANPVDILTYAAQKFSGFPKNKVFGSGTSLDSARLRVALSKKLNISSQSVDAYILGEH GDSEFAAYSAARVGGEPFLDVAKRTGLSDDDLATIEDQVRHKAYEIINRKGATFYGVATC LMRISRAILRDENAILPVGAPMNGEYGLNDVYIGSPAVINGSGIEKVIEVPLNDKEKAAM KASAETLQKTTKDGMDQL >gi|238617810|gb|GG669611.1| GENE 55 58505 - 59065 499 186 aa, chain + ## HITS:1 COG:BS_spoVC KEGG:ns NR:ns ## COG: BS_spoVC COG0193 # Protein_GI_number: 16077121 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Bacillus subtilis # 1 186 1 185 188 190 50.0 1e-48 MKMIVGLGNIGPQYDGTRHNTGFMVVEEFAKKHGISIKTRKMNAKMGSAFVNGQKVLVVE PTTFMNDSGIAVKPLMSYFEIENKDVIVVHDDMDLPIGKIRIKDKGSAGGHNGIKSLINN LGTEHFSRIRVGIAHPDKNNTVVNYVLGRFSKSQLPEFKIATDNAVNALEDWLDDVTIPE LENRYN >gi|238617810|gb|GG669611.1| GENE 56 59109 - 62615 2427 1168 aa, chain + ## HITS:1 COG:BS_mfd KEGG:ns NR:ns ## COG: BS_mfd COG1197 # Protein_GI_number: 16077123 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Bacillus subtilis # 17 1157 28 1172 1177 1126 50.0 0 MPQFTQIASNLKVDSRQLITGISGSARTLLIDNLLKTTTRPVVMVVDTLFHADQLVSDFS NLLEDDQIFEFPVEEMGAAELATSSPEYKAQRVLALNKLISGEPAVIVTSVSGLKRLLPS PDQFSDAELTIDMDSEYDLEKLKLKLHQMGYTFQKLVAAPGDFSIRGSILDVFPLNNQDP VRIDFFDTEVDSMRLFDVSNQRSIKTIDTIQILPATDLLITDQQRQRVAGELKDQLASEK AKLDDESAKKINNAIEPQIMDLENGLNDPKWLLFANLFYDQSNSLLDYLSDDGVVVFDDY SRITDSQRQLESDDDVWLTDKIKNHELLPSTNYTNDFKKIFKVNKKATLILSLFQKGLGR MRLDAIVDITVRPMQQFFSQMPMLRTEIGRWQKQKQSVIIMVQDQNRMQKVAQTLSDFEI AATQTEMSAILLHQVQLVHGNLENGFELPIAGLVVITEKEMFGTIVKKRPRQTTFNNAER IKSYTDLKPGDYVVHVNHGIGRYEGMKTMEVDGKHQDYLTISYRDSAKLFIPVTQLNMIQ KYVSSEDKKPRINKLGGSEWQKTKRKVASKIEDIADDLIELYAKRDAEKGYAYPPDDSLQ NEFEARFPYTETPDQLRSADEIKHDMEHNKPMDRLLVGDVGYGKTEVALRAAFKAVEVGK QVAFLVPTTILAQQHYETMLERFSDYPIEVRVLSRFQTTAQIKETLEGLKKGTVDVVVGT HRLLSKDVKFSNLGLLIIDEEQRFGVKHKERIKEMRTDVDVLTLTATPIPRTLNMSMMGV RDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMARGGQVFYLHNRVADIEKTVSQLS ELVPDARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNTLFVENADH MGLSQLYQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFTELGSGFKIAMRDL SIRGAGNLLGKQQSGFVDSVGYDLYTQMLSDAVSKKRGKNVVFKTDATVELDLEAYLPSD YIQDSQQKIEIYKRIRQIENQDQLNEVTDDLIDRFGDYNEPVANLLKISEMKMYADKAMI EKVHQDGPRVTLTFAKQASEEFTSKELLAAIAQTKFRATINSADNKYQVVLTVQPNMKDW LDQIIALSKSLTNTRKKHQANKVTSNDK >gi|238617810|gb|GG669611.1| GENE 57 62605 - 64176 932 523 aa, chain + ## HITS:1 COG:lin0247 KEGG:ns NR:ns ## COG: lin0247 COG2244 # Protein_GI_number: 16799324 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Listeria innocua # 8 517 7 520 529 242 33.0 2e-63 MTNNSRRKQVLAGTFLLTIASFVAKFLSAVYRVPFQNMVGNVGFYVYQQIYPIYGIGMTV ALTGLPLFISKLVVDVKNPEDRIALVYRIQVIVTFLSVGFFLLLQFGSGFIAQAMSDSRL APVIRAVSWMFLLGPFLSTWRGYFQGQMDMRPTAYSQVIEQVVRVTFILVSAGWAVRHFA DPYTIGTLAMLSAPIAGLCALVSVYYHVVRARLPKSSHRQVYRRLFTKILFEGGTLCLVS AVMLLLQLVDSFSVVSGLRDFGLSFVEAQNIKGIYDRSQTLVQLGMVVTTASITAALPSL SLANVRKQDVTFLHLSKTNVRVNLAISMAMSAGLFVLMPDINGLLFSTAQLNLTIAVYCF SIVLTTIILTYNMVLQARGYYAPTMLAITCGFVVKLIINKWLVATFGIIGASAATLIGLI VMIFLMKLIASRYLSHLIDGVQLIKLTSVLLAMMIVVGGLSRLVDNIGLFAPGRLQSLIV VVICIPIGIAMFFYGCKRLKVFSIREWFAIPLLSKLMRRIKLR >gi|238617810|gb|GG669611.1| GENE 58 64193 - 64465 382 90 aa, chain + ## HITS:1 COG:L1001 KEGG:ns NR:ns ## COG: L1001 COG1188 # Protein_GI_number: 15671997 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Lactococcus lactis # 1 81 17 97 105 88 66.0 3e-18 MRIDKFLKVSRIIKRRSVAKEIADKGRITINDRIAKSSSDVSTNDTIVIKFGNKTLTILV KALLDTTKKDDAQKMYEIVSEDYEHDFRNE >gi|238617810|gb|GG669611.1| GENE 59 64561 - 64968 367 135 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1566 NR:ns ## KEGG: Lbuc_1566 # Name: not_defined # Def: Septum formation initiator # Organism: L.buchneri # Pathway: not_defined # 1 132 1 132 136 135 56.0 5e-31 MVQQQQKIKKLENDYTRKRELEFQTTKASLSVRRRRRKRACIIFSVFMIFALIFAVQIVR AKVNYAAVNVQISKQKQKVKKEQVNHKRLTARVSQLNDKDYVEQLIRDRYYYTKPGETVY SFPNQAPKDVNNGNE >gi|238617810|gb|GG669611.1| GENE 60 65207 - 65716 351 169 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1] # 1 168 1 133 134 139 47 3e-32 MAIEVGEKVNGKVSGITNFGAFIDLGDHRTGLVHISEVSDGFVKDIHDVLKVGDEVTVKV LKIEGNNKISLSIRKATDSSSHEGDHESSHGNYSHHNEHEHENSHDYHENHGHHSRGNHS SSNRGNHSGSHPESFDDLMSGFLKQSEDRLATLRKNTEGKRGGRGGRRS >gi|238617810|gb|GG669611.1| GENE 61 65864 - 67243 546 459 aa, chain + ## HITS:1 COG:SA0467 KEGG:ns NR:ns ## COG: SA0467 COG0037 # Protein_GI_number: 15926186 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Staphylococcus aureus N315 # 1 427 1 413 431 174 30.0 2e-43 MVLQNNWWKTDQPVVVAVSTGIDSMTLLYLLEHLDQCSPQIIVAYVDHCLREQSKRETVF IQQYCSDHHLKLVQAVWNRKQHPQHGIEAAAREFRYRFFRRVLKENQATVLLTAHHGDDL AETMLMKLVRGGQIESLIGIAEQRPTSFGSVVRPLLHFSKKEIHQFASSVHIKWFEDETN RDLTIQRNRFRHQIVPKMKQENPRMLKHFVDYSKQLKTLIEVNQELMRPTAEEILSSFKP GRQLTLSRKLMTSYSDDVQISLVKFLIEKKLKIQNIPLNQFEEIHRLMTNTAKPQGTLSL PNGWLFIKSYQKLTIVKKVDNHVIKPKNDEQFMVILDRWYSLKDGSRFGVFTTKILGNYK ITTFHLSEKDFPLIIRHWRNGDRLRLKNGGHQKVSRVLINAKIPQEDRLDTNVLMTSQDE ILAVPGLKSAFFSENLGKVFYLIEDKKQSTSERKGIDNE >gi|238617810|gb|GG669611.1| GENE 62 67236 - 67778 501 180 aa, chain + ## HITS:1 COG:lin0251_2 KEGG:ns NR:ns ## COG: lin0251_2 COG0634 # Protein_GI_number: 16799328 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Listeria innocua # 1 178 1 178 179 214 58.0 6e-56 MNNDILKVLYSTEQIDEACKRLGKQIQKVYADKVPVVIGVLKGATFFMSDIVRQADTYME IDFIDVSSYHGTTQSSGKVDLVTDISTDVSGRDVLIIEDIVDTGRTLKFLMDNLTKRGAR SIKVCTLLDKPAGRQVEANSDFIGFEVPNEFVVGYGLDYDEKYRNLPYIGVLKPEIYTNN >gi|238617810|gb|GG669611.1| GENE 63 67849 - 70002 1337 717 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 113 664 80 634 636 519 50 1e-146 MNSNKNGLFKNSLFYIVIFLLIMGVIYFFNGSSTNTQSQEVQSSQFVKDLKSDKVKSFSI QPSGGVYKITGQYRQGQKAKVNSGFLVGGNQSQSKNVTKFTTTVLENNSSIAEITKAAQS NDIKMNAKPEESSGFWVNLLVYVLPLLLFVWFFYMMMGRAGGQGGGNGRVMNFGKSKAKP ADSKQNKVRFSDVAGEEEEKQELVEVVEFLKDPRKFTTLGATIPHGVLLEGPPGTGKTLL AKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFDQAKKAAPAIIFIDEIDAVGRRRG AGMGGGHDEREQTLNQLLVEMDGFSGNEGVIVIAATNRADVLDPALTRPGRFDRKILVGR PDINGREAILKVHSKNKPFANDVDLHEIAKQTPGFVGADLANLLNEAALLAARRNKTKID ASDIDEAEDRVIAGPAKRNRVISKEERETVAYHEAGHTVVGLVLNDARVVHKVTIVPRGR AGGYAIMLPREDQQLMSKRDAMEQIAGLMGGRAAEELVFNSQSSGASNDFEQATNIARAM VTQYGMSERLGNVQLENPAQDTYGPRYSQETAAAVDEEIRRLTNEAYASAKKIIGEHRDK HKLIAQALLKYETLDEKQILSLWNTGEMPENSKTSEFPSERAATFEEAKRELERKEAERQ AELEKQHTGNETSEDQSESNKSNNDSDKTEKPDDVSSNDQKQNSDQSNQDDHHDDSK >gi|238617810|gb|GG669611.1| GENE 64 70080 - 70982 795 300 aa, chain + ## HITS:1 COG:BS_yacC KEGG:ns NR:ns ## COG: BS_yacC COG1281 # Protein_GI_number: 16077139 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Bacillus subtilis # 3 290 2 287 291 274 46.0 2e-73 MKDYLVKATTTDGMFRAYAVNAKDTVTTAQKDHDTWSASSAALGRTLIGSVMLAASVDKS GEAITVKINGQGPVGGIVADSDSKGHVKGYIQNPHVHLPLNDNHRIDVSKAVGVNGFLEV TRASANEDPYTSSVPLASGEIGDDFTFYLAQSEQIPSAVGVSVFVNEDHSIGAAGGYLIQ TLPGASDEAITKVINRIKEIPMISELLLDRQTPEEILDLIFGKRNLHILDQMPVEFYCDC SKEKFAKDLSGISVDQLETMLTEDKGVNVTCNFCQSKYRYNEDELKTIIDVAKQKKGQSK >gi|238617810|gb|GG669611.1| GENE 65 71131 - 72138 488 335 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 4 322 29 350 353 192 35 4e-48 MEWKIGDITIPNQVVVAPMAGVTNSAFRIICKEFGAGLVVCEMISDRGIMYKNKKTLDMM FVDPREHPMSIQIFGGTKETLVQAAKFVDQNTAADIIDINMGCPVNKVVKTDAGARWLLD PKKVYEMVSYVTDAVKKPVTVKMRTGWDEDHIYAVENALAAERAGASALAMHGRTRKQMY MGHANWDILKEVAGQLHIPFMGNGDVRTPQDAKKMLEDVGADAVMMGRAVEGNPWVLSQV EHYLETGDILPEPTPEKKIATAKEHLHRLVELKGDHVGSHEFRGQSGYYLKGISHSARTK VALVNADGEQAMDDIFDQFLEKNAQRQARHQQMAQ >gi|238617810|gb|GG669611.1| GENE 66 72225 - 73700 1061 491 aa, chain + ## HITS:1 COG:SP0713 KEGG:ns NR:ns ## COG: SP0713 COG1190 # Protein_GI_number: 15900610 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Streptococcus pneumoniae TIGR4 # 2 483 9 491 491 648 66.0 0 MIVRRQKMDELRKEGIDPFGHRFQRTYLATQLHDEFDNTDKDDLMNLNKKVTVAGRMMAK RGKGKVGFADLKDRTGKIQIYVRKDIVGDDIYHIFKRSDIGDHLGISGQIIKTDMGELTV RAESVTFLSKALRPLPDKWHGLQDQEQKYRQRYLDLISNQDSFDRFHKRSHIITAIRNYL DSHDYLEVETPVLHNQAGGANARPFITHHNALNIDLYLRIALELHLKRLIVGGMERVYEI GRVFRNEGMDTRHNPEFTMLESYVAYYDFHDVMDETEGIFKAAAKTVTDDGMITYQGHTI DLDKPFKRQHMVDAIKEYTGIDFWKPMDDDAAKKLADEHHIHYEPWWKTGHIINAFFEEL VQPKLEQPTFIYGHPVEISPLAKKNAEDPRFTDRFELYILTNEFANAFTELNDPIDQRQR FEAQVKERQEGNDEAEGIDEDYIEALEYGMPPTGGLGIGIDRLVMLLTDAPSIRDVLLFP TMRPEDNSEKE Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:37:17 2011 Seq name: gi|238617809|gb|GG669612.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD9, whole genome shotgun sequence Length of sequence - 5267 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + SSU_RRNA 92 - 1657 99.0 # AB429370 [D:1..1566] # 16S ribosomal RNA # Lactobacillus hilgardii # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. + LSU_RRNA 2333 - 3356 92.0 # CP000416 [D:87928..90845] # 23S ribosomal RNA # Lactobacillus brevis ATCC 367 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. + LSU_RRNA 3723 - 5077 95.0 # CP000416 [D:87928..90845] # 23S ribosomal RNA # Lactobacillus brevis ATCC 367 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. + 5S_RRNA 5151 - 5267 93.0 # CP000416 [D:90914..91032] # 5S ribosomal RNA # Lactobacillus brevis ATCC 367 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:37:18 2011 Seq name: gi|238617808|gb|GG669613.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD10, whole genome shotgun sequence Length of sequence - 2773 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 58 - 1236 369 ## BF2854 hypothetical protein - Prom 1394 - 1453 5.4 + Prom 1703 - 1762 4.8 2 2 Tu 1 . + CDS 1851 - 2772 521 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair Predicted protein(s) >gi|238617808|gb|GG669613.1| GENE 1 58 - 1236 369 392 aa, chain - ## HITS:1 COG:no KEGG:BF2854 NR:ns ## KEGG: BF2854 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 13 195 222 393 496 89 33.0 3e-16 MSDTTEAIEQVTSLSDYISKVRKLHSVLESKMNQLHSGKQMNIYYRGQNQAFPNTLPSLI RNENYLTNEDKLINDFITKYPELFGDCQNNFDRLALMQHHQLPTRLLDLTSNSLVALYFA VERSNGSTNKDTDLIDGKIFPFTNFYDQVPLYQSLADDHFENIFSEFTSIKGNNRQFLKS PFSDEIEIESSLSRLNGDDRNIVLSQLSQFYRDLSKVDIKDSAYWSNLYADIVNSLANKR DEGGLLNSYKEFNKFSSTKRLYHEIKKDIGDFEDQINPLELFVPKIVTPRIIDQRIKNQK GLFMFVPFVYNYGFEESGSQVALNSDEVQKRTQTRINILRLLSDSIDPKPMAFVIPHCKK ASIRSELESVGITESFIYPDPSHIAHEISKTY >gi|238617808|gb|GG669613.1| GENE 2 1851 - 2772 521 307 aa, chain + ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 16 300 18 300 426 250 46.0 2e-66 MKLFTDDEPHGVFFLIDNKSFYASCEAVSRGLNPLKVPLVVLSEAENTNGGLILATSPEA KHLFHLKANVSRKRDLPNDPRLWVVPPRMNLYIQRNLQINQIFHQFTTEKEVWPYSIDES ILDMTHTWRLFGNSVREVACLIQKTVRQKLGLYTTVGIGDSPVQAKLALDLYAKHNHELI GEIHYETVPDKIWSITELTDVWGIGPHMAKRLNRLHIHNMYELAHTNPYLLKQQLGVIGS QLFATAWGIDRAQVTEPTKVKAASLGNSQVLPRDYFNQAEIETVIKEIGEQVAARLRHHH KLTGCLS Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:37:25 2011 Seq name: gi|238617807|gb|GG669614.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD11, whole genome shotgun sequence Length of sequence - 2364 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 + CDS 42 - 1460 1372 ## COG2211 Na+/melibiose symporter and related transporters + Prom 1473 - 1532 2.2 2 1 Op 2 . + CDS 1564 - 2362 834 ## COG3533 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|238617807|gb|GG669614.1| GENE 1 42 - 1460 1372 472 aa, chain + ## HITS:1 COG:STM0042 KEGG:ns NR:ns ## COG: STM0042 COG2211 # Protein_GI_number: 16763432 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 28 458 20 452 457 328 41.0 2e-89 MSSNASHVDSNTASAQALLANDTLPWHRKITYGFTDMSGNLLYCIISSYMLYFFTNVFGL TVGTAGVLLLIGRIFDAIGAPVMGILVDHTHSKYGKSRPWFLWMSLPFAVFVWLLFTTPA LSGTAKIIYAGVMYILADLSYTAMSTPITSVLPNLTSSTDGRMQANSVRLVLGNVGNFFA VTFIIPFAGLLGNGNQQRGWSLAVGIYSIVALILLLIAFFDMREKNIESEKVITIKESLK ATKGNWPWVLIVVANLAYWTAFIVRNASMPYYFQYNMGSTGLISFFNGFTIIQVIGMASV PFFVKYMHKWGTTVFMLALTMVGQAWIGFAGANTTSALIGWCIACIGSGSACTMFFAMVG DTVDFGEWKTGVRANGFLTAIGASFCIQMGSGFGSFIASMLLKGFGFNAAVKTQTASSLS GISFTFVWVPVIIYAISLILMIVYRKWENHEPVVKADLAERHAQDAKAATAN >gi|238617807|gb|GG669614.1| GENE 2 1564 - 2362 834 266 aa, chain + ## HITS:1 COG:STM3679 KEGG:ns NR:ns ## COG: STM3679 COG3533 # Protein_GI_number: 16766964 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 9 246 8 234 651 227 47.0 2e-59 MQVYTTPKLNKVKVTSDFWKRYRELVVKEVLPYQWKVMNDEADISIAEDPQNNGQDKNSH AVANLKIAAGEMTGHHYGFPFQDTDVYKWLEAAAYSFGYHPNPDLKQITDNLIDLIAKAQ DDDGYLSTYFQIDAPERKFKRLQQSHELYTMGHYIEAGVAYYNATGNEKALDIAKRMANC IDNHFGLEEGKIPGYDGHPEIELALSRLYEVTQDKKYLDLAHYFLTQRGQDPAFFEKQIK ADGDSTDRDLIPGMRDFTREYYLAAE Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:38:03 2011 Seq name: gi|238617806|gb|GG669615.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD12, whole genome shotgun sequence Length of sequence - 118942 bp Number of predicted genes - 114, with homology - 111 Number of transcription units - 53, operones - 27 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 11 - 83 85.5 # Val TAC 0 0 + TRNA 88 - 160 81.4 # Lys TTT 0 0 + TRNA 199 - 271 87.9 # Thr TGT 0 0 + TRNA 276 - 347 79.2 # Gly GCC 0 0 + TRNA 354 - 439 67.3 # Leu TAA 0 0 + TRNA 446 - 519 67.6 # Arg ACG 0 0 + TRNA 529 - 602 88.2 # Pro TGG 0 0 + TRNA 636 - 709 70.3 # Met CAT 0 0 + TRNA 731 - 804 89.2 # Met CAT 0 0 + TRNA 843 - 930 62.1 # Ser TGA 0 0 + TRNA 940 - 1013 76.8 # Met CAT 0 0 + TRNA 1018 - 1091 69.0 # Asp GTC 0 0 + TRNA 1097 - 1172 74.4 # Phe GAA 0 0 + TRNA 1188 - 1258 63.8 # Gly TCC 0 0 + TRNA 1276 - 1349 92.9 # Ile GAT 0 0 + TRNA 1354 - 1441 60.6 # Ser GCT 0 0 + TRNA 1448 - 1519 66.8 # Glu TTC 0 0 + TRNA 1550 - 1623 76.8 # Met CAT 0 0 + TRNA 1628 - 1704 74.6 # Asp GTC 0 0 - Term 4216 - 4276 14.2 2 2 Tu 1 . - CDS 4300 - 4830 419 ## Lbuc_0665 hypothetical protein + Prom 4816 - 4875 5.1 3 3 Tu 1 . + CDS 4916 - 5656 396 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III + Prom 5662 - 5721 6.6 4 4 Op 1 . + CDS 5775 - 6173 350 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Prom 6195 - 6254 8.1 5 4 Op 2 . + CDS 6290 - 6958 736 ## COG4862 Negative regulator of genetic competence, sporulation and motility + Term 6988 - 7042 18.1 - Term 6976 - 7029 14.1 6 5 Op 1 4/0.000 - CDS 7088 - 8101 618 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 7 5 Op 2 . - CDS 8119 - 10227 1670 ## COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - Prom 10302 - 10361 4.5 8 6 Tu 1 . - CDS 10382 - 10678 83 ## Lbuc_0671 GtrA family protein - Prom 10840 - 10899 6.0 + Prom 10660 - 10719 4.7 9 7 Op 1 40/0.000 + CDS 10955 - 11647 653 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Prom 11695 - 11754 5.9 10 7 Op 2 . + CDS 11938 - 12957 695 ## COG0642 Signal transduction histidine kinase + Term 13006 - 13056 5.2 - Term 12993 - 13042 4.0 11 8 Tu 1 . - CDS 13085 - 14611 956 ## COG2918 Gamma-glutamylcysteine synthetase - Prom 14657 - 14716 8.6 + Prom 14637 - 14696 8.6 12 9 Op 1 7/0.000 + CDS 14768 - 15916 581 ## COG4469 Competence protein 13 9 Op 2 . + CDS 15957 - 17762 1435 ## COG1164 Oligoendopeptidase F + Term 17871 - 17907 1.6 - Term 17853 - 17899 10.2 14 10 Tu 1 . - CDS 17966 - 18592 299 ## COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis - Prom 18621 - 18680 9.0 + Prom 18863 - 18922 4.1 15 11 Op 1 6/0.000 + CDS 19022 - 19672 339 ## COG2357 Uncharacterized protein conserved in bacteria 16 11 Op 2 7/0.000 + CDS 19653 - 20465 664 ## COG0061 Predicted sugar kinase 17 11 Op 3 1/0.200 + CDS 20458 - 21351 247 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit + Term 21448 - 21481 0.2 + Prom 21463 - 21522 4.4 18 12 Op 1 . + CDS 21559 - 22233 300 ## COG0500 SAM-dependent methyltransferases 19 12 Op 2 . + CDS 22226 - 22738 435 ## COG0219 Predicted rRNA methylase (SpoU class) + Term 22775 - 22839 3.0 + Prom 22772 - 22831 4.3 20 13 Tu 1 . + CDS 22880 - 25192 1788 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins + Prom 25372 - 25431 5.0 21 14 Tu 1 . + CDS 25549 - 25932 271 ## Lbuc_0685 hypothetical protein + Term 25991 - 26046 9.4 + Prom 26132 - 26191 7.0 22 15 Op 1 29/0.000 + CDS 26219 - 26644 406 ## COG2001 Uncharacterized protein conserved in bacteria 23 15 Op 2 . + CDS 26687 - 27634 781 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 24 15 Op 3 . + CDS 27656 - 28033 321 ## Lbuc_0688 cell division protein FtsL 25 15 Op 4 4/0.000 + CDS 28030 - 30189 1873 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 26 15 Op 5 28/0.000 + CDS 30239 - 31198 835 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase + Term 31200 - 31244 4.5 + Prom 31217 - 31276 4.6 27 15 Op 6 4/0.000 + CDS 31341 - 32723 1259 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 28 15 Op 7 3/0.100 + CDS 32720 - 33811 936 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase + Prom 33828 - 33887 4.2 29 16 Op 1 25/0.000 + CDS 33934 - 34764 476 ## COG1589 Cell division septal protein + Prom 34772 - 34831 4.2 30 16 Op 2 35/0.000 + CDS 34872 - 36176 1105 ## COG0849 Actin-like ATPase involved in cell division 31 16 Op 3 . + CDS 36201 - 37523 1420 ## COG0206 Cell division GTPase 32 16 Op 4 . + CDS 37588 - 37938 237 ## COG1799 Uncharacterized protein conserved in bacteria + Prom 37945 - 38004 1.7 33 17 Op 1 . + CDS 38029 - 38259 283 ## Lbuc_0697 hypothetical protein 34 17 Op 2 6/0.000 + CDS 38281 - 39075 1359 ## PROTEIN SUPPORTED gi|227509386|ref|ZP_03939435.1| ribosomal protein S4e 35 17 Op 3 6/0.000 + CDS 39091 - 39762 769 ## COG3599 Cell division initiation protein + Term 39928 - 39968 7.4 + Prom 39862 - 39921 3.2 36 17 Op 4 . + CDS 40043 - 42850 2374 ## COG0060 Isoleucyl-tRNA synthetase + Prom 42856 - 42915 5.9 37 18 Op 1 . + CDS 42982 - 43197 336 ## Lbuc_0701 Cold-shock protein DNA-binding protein 38 18 Op 2 . + CDS 43257 - 43799 347 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 39 18 Op 3 . + CDS 43812 - 44102 169 ## Lbuc_0703 small membrane protein 40 18 Op 4 . + CDS 44172 - 44873 716 ## COG0775 Nucleoside phosphorylase 41 18 Op 5 . + CDS 44880 - 46049 903 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 42 18 Op 6 . + CDS 46049 - 46393 396 ## Lbuc_0706 hypothetical protein + Term 46423 - 46476 3.2 + Prom 46588 - 46647 8.0 43 19 Op 1 1/0.200 + CDS 46812 - 47840 1137 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase + Term 47887 - 47922 0.2 + Prom 47892 - 47951 5.5 44 19 Op 2 . + CDS 48059 - 49099 959 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase + Term 49162 - 49208 7.7 + Prom 49101 - 49160 2.8 45 20 Tu 1 . + CDS 49252 - 50100 782 ## COG1387 Histidinol phosphatase and related hydrolases of the PHP family 46 21 Tu 1 . - CDS 50382 - 50567 63 ## + Prom 50443 - 50502 6.7 47 22 Op 1 11/0.000 + CDS 50566 - 51723 751 ## COG3705 ATP phosphoribosyltransferase involved in histidine biosynthesis 48 22 Op 2 . + CDS 51710 - 52363 501 ## COG0040 ATP phosphoribosyltransferase 49 22 Op 3 18/0.000 + CDS 52369 - 52953 556 ## COG0131 Imidazoleglycerol-phosphate dehydratase 50 22 Op 4 25/0.000 + CDS 52953 - 53579 557 ## COG0118 Glutamine amidotransferase 51 22 Op 5 23/0.000 + CDS 53557 - 54285 808 ## COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase 52 22 Op 6 24/0.000 + CDS 54275 - 55033 790 ## COG0107 Imidazoleglycerol-phosphate synthase 53 22 Op 7 4/0.000 + CDS 55111 - 55365 113 ## COG0139 Phosphoribosyl-AMP cyclohydrolase 54 22 Op 8 . + CDS 55358 - 55684 511 ## COG0140 Phosphoribosyl-ATP pyrophosphohydrolase 55 22 Op 9 . + CDS 55712 - 56797 659 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase 56 22 Op 10 . + CDS 56900 - 58024 950 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain + Term 58098 - 58151 12.6 - Term 58092 - 58133 8.0 57 23 Tu 1 . - CDS 58183 - 59103 797 ## COG0679 Predicted permeases - Prom 59179 - 59238 6.4 + Prom 59263 - 59322 6.0 58 24 Op 1 . + CDS 59457 - 60005 360 ## COG0406 Fructose-2,6-bisphosphatase 59 24 Op 2 . + CDS 60015 - 60782 800 ## Lbuc_0721 hypothetical protein + Term 60784 - 60816 -0.0 60 24 Op 3 . + CDS 60846 - 63332 1915 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Prom 63375 - 63434 6.5 61 25 Op 1 1/0.200 + CDS 63469 - 63861 338 ## COG0462 Phosphoribosylpyrophosphate synthetase 62 25 Op 2 . + CDS 63858 - 64427 372 ## COG0462 Phosphoribosylpyrophosphate synthetase 63 25 Op 3 1/0.200 + CDS 64453 - 65448 1090 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) + Term 65489 - 65537 4.1 + Prom 65518 - 65577 7.8 64 26 Op 1 13/0.000 + CDS 65673 - 66683 726 ## COG1609 Transcriptional regulators + Term 66766 - 66822 2.3 + Prom 66752 - 66811 4.3 65 26 Op 2 . + CDS 66923 - 67840 899 ## COG0524 Sugar kinases, ribokinase family + Term 67916 - 67954 0.1 + Prom 67873 - 67932 4.8 66 27 Tu 1 . + CDS 68033 - 68251 289 ## Lbuc_0727 hypothetical protein + Term 68273 - 68314 8.0 - Term 68261 - 68300 7.6 67 28 Op 1 . - CDS 68339 - 69298 688 ## COG1397 ADP-ribosylglycohydrolase - Prom 69361 - 69420 3.0 68 28 Op 2 . - CDS 69485 - 70462 484 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 70494 - 70553 3.5 - Term 70495 - 70564 17.5 69 29 Op 1 7/0.000 - CDS 70595 - 72280 1377 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 70 29 Op 2 . - CDS 72277 - 72498 242 ## COG5503 Uncharacterized conserved small protein - Prom 72601 - 72660 10.5 + Prom 72603 - 72662 7.2 71 30 Tu 1 . + CDS 72700 - 73179 284 ## Lbuc_0732 hypothetical protein + Prom 73245 - 73304 6.1 72 31 Tu 1 . + CDS 73469 - 73696 63 ## + Term 73912 - 73946 1.1 73 32 Tu 1 . - CDS 73616 - 74173 493 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 74231 - 74290 11.2 + Prom 74314 - 74373 9.4 74 33 Op 1 28/0.000 + CDS 74560 - 75681 1176 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 75 33 Op 2 24/0.000 + CDS 75684 - 76661 907 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 76 33 Op 3 30/0.000 + CDS 76692 - 78011 1289 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 77 33 Op 4 1/0.200 + CDS 78019 - 79443 767 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 79487 - 79536 8.5 + Prom 79555 - 79614 7.1 78 34 Op 1 2/0.100 + CDS 79672 - 79956 239 ## COG4476 Uncharacterized protein conserved in bacteria 79 34 Op 2 1/0.200 + CDS 79958 - 80737 646 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family + Term 80747 - 80781 0.4 + Prom 80739 - 80798 3.8 80 35 Tu 1 . + CDS 80843 - 82690 1595 ## COG1217 Predicted membrane GTPase involved in stress response + Term 82737 - 82781 6.0 + Prom 82813 - 82872 5.8 81 36 Op 1 . + CDS 82911 - 84089 752 ## COG0772 Bacterial cell division membrane protein 82 36 Op 2 2/0.100 + CDS 84111 - 84398 192 ## COG4471 Uncharacterized protein conserved in bacteria 83 36 Op 3 14/0.000 + CDS 84414 - 84977 436 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 84 36 Op 4 4/0.000 + CDS 84980 - 85453 305 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 85 36 Op 5 . + CDS 85472 - 86509 382 ## PROTEIN SUPPORTED gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 86 36 Op 6 4/0.000 + CDS 86580 - 87323 478 ## COG1555 DNA uptake protein and related DNA-binding proteins 87 36 Op 7 4/0.000 + CDS 87357 - 87848 391 ## COG2131 Deoxycytidylate deaminase + Prom 87856 - 87915 3.8 88 36 Op 8 4/0.000 + CDS 87950 - 90103 608 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 89 36 Op 9 . + CDS 90100 - 91128 704 ## COG1466 DNA polymerase III, delta subunit + Term 91176 - 91227 17.4 - Term 91224 - 91262 1.4 90 37 Tu 1 . - CDS 91272 - 91526 404 ## PROTEIN SUPPORTED gi|227509440|ref|ZP_03939489.1| ribosomal protein S20 - Prom 91574 - 91633 8.3 + Prom 91617 - 91676 6.4 91 38 Tu 1 . + CDS 91767 - 92036 453 ## PROTEIN SUPPORTED gi|227509441|ref|ZP_03939490.1| ribosomal protein S15 + Term 92070 - 92130 14.1 + Prom 92075 - 92134 6.0 92 39 Tu 1 . + CDS 92223 - 93959 1657 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily + Term 93984 - 94042 4.6 + Prom 93992 - 94051 3.2 93 40 Tu 1 . + CDS 94074 - 95003 619 ## Lbuc_0757 hypothetical protein + Term 95081 - 95138 -0.6 + Prom 95013 - 95072 8.0 94 41 Tu 1 . + CDS 95186 - 96373 1365 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 + Term 96391 - 96436 9.8 + Prom 96443 - 96502 8.3 95 42 Op 1 4/0.000 + CDS 96556 - 97893 1352 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) + Term 97900 - 97960 2.4 + Prom 97931 - 97990 5.6 96 42 Op 2 4/0.000 + CDS 98095 - 99342 281 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 + Term 99349 - 99401 9.0 + Prom 99352 - 99411 4.6 97 43 Op 1 . + CDS 99445 - 100032 396 ## COG0218 Predicted GTPase 98 43 Op 2 . + CDS 100029 - 100340 324 ## COG1694 Predicted pyrophosphatase + Term 100373 - 100426 12.5 + Prom 100347 - 100406 7.9 99 44 Op 1 16/0.000 + CDS 100641 - 101936 1288 ## COG0137 Argininosuccinate synthase 100 44 Op 2 . + CDS 101936 - 103321 1232 ## COG0165 Argininosuccinate lyase + Term 103409 - 103456 11.1 - Term 103389 - 103452 15.1 101 45 Tu 1 . - CDS 103495 - 103653 174 ## - Prom 103746 - 103805 7.8 + Prom 103762 - 103821 6.6 102 46 Op 1 34/0.000 + CDS 103852 - 105318 1284 ## COG0765 ABC-type amino acid transport system, permease component 103 46 Op 2 . + CDS 105308 - 106057 582 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 106132 - 106176 10.6 + Prom 106205 - 106264 6.3 104 47 Tu 1 . + CDS 106356 - 108125 1214 ## COG0322 Nuclease subunit of the excinuclease complex + Prom 108143 - 108202 7.1 105 48 Op 1 . + CDS 108253 - 109563 965 ## COG0536 Predicted GTPase 106 48 Op 2 . + CDS 109595 - 111532 1320 ## COG1835 Predicted acyltransferases + Term 111553 - 111587 -0.4 - Term 111585 - 111633 14.3 107 49 Op 1 . - CDS 111715 - 112470 538 ## Lbuc_0771 hypothetical protein 108 49 Op 2 . - CDS 112482 - 112769 260 ## Lbuc_0772 hypothetical protein - Prom 112853 - 112912 6.3 + Prom 112767 - 112826 5.4 109 50 Tu 1 . + CDS 112885 - 113832 790 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III + Term 113845 - 113889 2.1 + Prom 113839 - 113898 5.8 110 51 Op 1 . + CDS 113925 - 114347 322 ## Lbuc_0774 hypothetical protein 111 51 Op 2 7/0.000 + CDS 114363 - 116693 1750 ## COG0608 Single-stranded DNA-specific exonuclease 112 51 Op 3 . + CDS 116711 - 117229 420 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins + Term 117240 - 117295 12.1 + TRNA 117406 - 117494 73.2 # Ser CGA 0 0 - Term 117618 - 117659 5.1 113 52 Tu 1 . - CDS 117667 - 118311 263 ## COG0586 Uncharacterized membrane-associated protein - Prom 118336 - 118395 8.9 + Prom 118321 - 118380 9.1 114 53 Tu 1 . + CDS 118554 - 118931 105 ## COG1098 Predicted RNA binding protein (contains ribosomal protein S1 domain) Predicted protein(s) >gi|238617806|gb|GG669615.1| GENE 1 2037 - 4214 2000 725 aa, chain + ## HITS:1 COG:MA0166 KEGG:ns NR:ns ## COG: MA0166 COG2217 # Protein_GI_number: 20089064 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Methanosarcina acetivorans str.C2A # 16 725 60 764 764 598 45.0 1e-170 MSKQENNHMKKMVMNSNQENNQDKNMQMSEHQDHQSMSHIKMTHRNMEMNHDDMEHMDHE MSGMNMGHGMSGHHMNMDMGDLNRRFWISLILTIPVILLSPMAGMGGFGFHFSWSPLLLT IIGSILYFYGGKPFFSGAKMEMKSKQPGMMSLITLGITVAYFYSIYSVVANNVFHVTPTV DEFFWELSTLIDIMLLGHIIEMKSIDSAGSAVDALSKLLPSTAKVVRNGQVVNVNVADLK INDIVQVQAGEKIPADGAIVKGTTTVNESLVTGESKLVPKSINDDVIGGSINNDGTFEFK VDKAQNDSFLNKVMQLVMNASNNKSHAQTIADKVAGYLFYAALTVAIIAFISWMFVSGAT IALPIAVTVLIIACPHALGLAIPLVVSRSTALAAQNGLLIRDSSALEQSNKVQYVLMDKT GTLTEGNFKLNFYQTFNSHYSKDQILALAGALEKTSSHPLAKGVMDEVAEKKLQLDEAED VQQIPGFGLTGIVNGKKYQLVSSNYFEKESIEYNQETVNKLLADKNNSISFLIENNQVIG VIGEGDEIKAGSKPMIDYLKQHHIQPVMLTGDNEAIAASVASSLGIDDYRAKLLPEDKQK IVAEYQKRGTTMFIGDGVNDAPSLSGANVGVAIGAGTDVAIDSADIVLVRSDPKDVVDLF KLAKRTADKMKQNLWWGAGYNIVALPLAAGVLAFAGILLSPMVGAVLMSLSTVVVSVNAL TLRIG >gi|238617806|gb|GG669615.1| GENE 2 4300 - 4830 419 176 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0665 NR:ns ## KEGG: Lbuc_0665 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 10 174 1 165 167 242 68.0 5e-63 MNLKQEVGIVKKQIAITFGDNRIMKQIKEEYPDRDLVTYKALNQTGKQMMLDYSGENSIF HSPVLYDVLGHGGTDNWNSFISFSALDLNFDQQKVFDARINRLISNGLPQGMHSIYSLNY HKDISQRVILGTWQSYRDFELWKNSTHEFIPKEYRDSPSFYSHEAYYTPVEKKEIH >gi|238617806|gb|GG669615.1| GENE 3 4916 - 5656 396 246 aa, chain + ## HITS:1 COG:L125485 KEGG:ns NR:ns ## COG: L125485 COG1234 # Protein_GI_number: 15672701 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Lactococcus lactis # 1 246 1 250 250 229 48.0 3e-60 MKLTVLGFLGGYPANGNGTSSYLLESGNFHFLIDCGSAALLSLEEILDPLKLDALILTHY HHDHTADVGVLQYYWQLHEKRYDQKCLPIYGHTLDKINFDGLSWPDSTKGVAYDPEKQLD VGPFSITFFKMHHPVPAFGLRITEKATGKVLVFTADTAYFPEIAYFARNADLLMTDTNFY ADKTGTKWHMTSTESGQLAKDAEAKRLLLTHLPAYGDLNQLKQEAETAAGSGIPIDVASR HLTIQI >gi|238617806|gb|GG669615.1| GENE 4 5775 - 6173 350 132 aa, chain + ## HITS:1 COG:SP1405 KEGG:ns NR:ns ## COG: SP1405 COG1393 # Protein_GI_number: 15901259 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Streptococcus pneumoniae TIGR4 # 3 125 2 124 133 135 51.0 3e-32 MTVKFLMTPSCTSCRKAKKWLTENNVDFKERNIFANPLTKNELKQILMLSETGTEGLIST RSYVYDQFKDKINTLTIGELLELLETHPEMIRRPIMIDEKRLQIGFNDDEIRRFLPRDIR KSDLERMIKNAQ >gi|238617806|gb|GG669615.1| GENE 5 6290 - 6958 736 222 aa, chain + ## HITS:1 COG:lin2294 KEGG:ns NR:ns ## COG: lin2294 COG4862 # Protein_GI_number: 16801358 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms; N Cell motility # Function: Negative regulator of genetic competence, sporulation and motility # Organism: Listeria innocua # 1 221 1 217 217 89 31.0 7e-18 MEMERINENTIRVLIGNDDLDKRGITVLDLLGNHKQIESFFYSILEEVDKDHQFQNNDAV TFQVLPNQNGLELFISKDVDMSDEDEPLLGSGDGHEKHDQVSKYIDEHGVDNKPQSDKKT NDEFGHQKRTVILEFDDLNDFIELSKALRLENGTSDLYLYEGKYFLKLQLFSNDPVDMIV SDEVAIANEYGKKTTVTEDVLNEYGQQIMENSALELSRYYFK >gi|238617806|gb|GG669615.1| GENE 6 7088 - 8101 618 337 aa, chain - ## HITS:1 COG:BS_ykcC KEGG:ns NR:ns ## COG: BS_ykcC COG0463 # Protein_GI_number: 16078354 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 9 308 8 313 323 321 51.0 2e-87 MEKSTDLVSIVLPVFNEEQGIERTIDTLEAFISNQPQEFELIFVDDGSKDKSVALITEAQ KLHRNIKIVQFSRNFGHQLAITAGIRYTSGDAVVVMDADLQDPPSVIVEMIKKWKEGAEV VYGKRVSRDGETFFKKITAAIFYRTLRKITSINIPLDTGDFRLMDRKVVHELSKMNETDP YVRGMVSWVGFNQASVEYERQERIAGESKYPLSKMIRLAMDGVTSFSAFPLQLANWLGTL SIIFSIGYLIITLFTGFKTLQFAVFSLFLLVGLVFLSLGLVGSYLYRVFEASRKRPLYIV AKTSGFQSATQEVHDASKHGHKTTMYYARPSKNQVFE >gi|238617806|gb|GG669615.1| GENE 7 8119 - 10227 1670 702 aa, chain - ## HITS:1 COG:BS_yycA KEGG:ns NR:ns ## COG: BS_yycA COG1807 # Protein_GI_number: 16081101 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family # Organism: Bacillus subtilis # 1 601 42 656 685 470 44.0 1e-132 MTESFSNFWYGSFDPAGYITVDKPPVALWFMAISAKIFGLHGWSIVLPSVLFGVGSVYLM HRLVAPYFGKNAGRLAALAMTITPIVVADSRTNNMDATLVFFLLLALWFLEKAIVQKKVW ALIVSFSLIGIAFNVKMLQAFMILPAMYLFYWMAANENWKQKVKKLIFATVGLAVFTLAY PVSVDLTPASQRPYVGGSETNSELELAFGYNGTERLLGQTTGTGGTFGAGMTSKSQSKSM GMPGGGKMPTGAKNAMKKGKNGKTTMPTGAPGGQKGRQNMGAGGGGGAFNIGTIGPFRLF QSSLGPQISWLLPFAIIGLIGSLAYYHDRKKRWYSLSHEQKQLVLWAGWLVPVYGFFSVA SFFHPYYTIMLAPPIAALFGIGVVSLARLFKDNTRTNWKFYLFPSAILTTAALQAWYVYS YYPWLTWLILGIVIVASLLLFIFPKNNASKISMVVATITILIAPGWWSLTPTLSAESAMI PTAGPSLLSTSSSGPGGGGGMGNSKVNTKLLNYLEKHQGNAKYLFATSDSTTAAPYIIKT GKAVMAMGGFNGTDPAITLSQFKKLVKNGDLKYFYYSGRSGNTKIINWIKKHATKVKSSL YQDSSSKQQFGGFGTSTSKGSTNKPESSKKSATTPNAPKGMRNGKNMPGKGVPSKIKQST SAKSTAKAGNKQSTKKSQTAMPTGMGGMGSSGTLYDLSTIYK >gi|238617806|gb|GG669615.1| GENE 8 10382 - 10678 83 98 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0671 NR:ns ## KEGG: Lbuc_0671 # Name: not_defined # Def: GtrA family protein # Organism: L.buchneri # Pathway: not_defined # 1 98 38 135 135 105 61.0 7e-22 MAIGYGGTSLISLTLNNHWVFKTHAHFKSVVIKYYATYLSTWLLSTAIADILSHFTGVND HLIPIFSLMITVPTNFLLSKFWVFKNSSMKEAQHFGNQ >gi|238617806|gb|GG669615.1| GENE 9 10955 - 11647 653 230 aa, chain + ## HITS:1 COG:SP0798 KEGG:ns NR:ns ## COG: SP0798 COG0745 # Protein_GI_number: 15900691 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Streptococcus pneumoniae TIGR4 # 4 225 2 221 224 224 56.0 1e-58 MKELHILIIEDDESLAQSLQLFLGEIAQTTVSHDGFEGQMLGEEGIYDLVVLDLMLPQVN GYDILKHWRTESHLSMPVLILTAKDTLDDKVHGFELGADDYLTKPFHREELLMRVKALLK RSGHLGNDNQMVVEPFTVDLSNRTVTVRDQQLELNGKEFDLLVYFLQNPDTIITKEQIFD RLWGFESETAISVVEVYMSNLRKKIKTATDLKPIKTLRNVGYMFETEELD >gi|238617806|gb|GG669615.1| GENE 10 11938 - 12957 695 339 aa, chain + ## HITS:1 COG:SPy1236 KEGG:ns NR:ns ## COG: SPy1236 COG0642 # Protein_GI_number: 15675197 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Streptococcus pyogenes M1 GAS # 11 334 117 434 436 207 38.0 2e-53 MNNQMLGNRLYNVFVNTRLDVSKVNKIREMTLMSSDNSWHYFRTLLIKVPKTNKNPMYAG RYVLILENIDSDLLAIRGFRQSLLMTLLVFWFLAIAVAYFLSRSSMKPILESWNRQKQFS ANAAHELRTPLTVIQNQMEYMLTKPKATIIDQAEPISTTLDEVRHLQTLTNRLLMLARSD ADIIQINRQNVSLQSWFDQVIKPYIDIANSQTKAMETYIRVSGEGKIDEDLIRQLIIILL DNAIKYTPEGGTVTFTAEKIRDGRLKIEVKDTGTGISDNDKKHVFERFYRSDKSRNAKTG GNGLGLAIAKWIVDEHKGTISVKDNHPNGTVFMVVFPIK >gi|238617806|gb|GG669615.1| GENE 11 13085 - 14611 956 508 aa, chain - ## HITS:1 COG:PM1048_1 KEGG:ns NR:ns ## COG: PM1048_1 COG2918 # Protein_GI_number: 15602913 # Func_class: H Coenzyme transport and metabolism # Function: Gamma-glutamylcysteine synthetase # Organism: Pasteurella multocida # 24 483 22 474 481 219 32.0 9e-57 MLENLLANIKQEDVAEQLYHSLIGIEIEEHRIEGDGQLSQHPYPENLGSRKYHPYLQSDF SESMNELITDPNPNIGGVLDQLDTIQTVLYHSMKDDEYIWPLSMPPALSDDDIHFVENHF ARPPFQEYRDYLTKKYKVPLKIVTGLHVNFSIPEPVVNRLYTHYEGQFKSLVEFKNALYF QIAQNFVLHRWLLTYLFGASPIAEKGFFSGETPAPLTHPVRSIRNSIYGYVNKPEDQVNV TLYSSLGNYIDRISNAIDRHRLFSPAEFYGPVRLRGQGALKDYRTKGISYLEFRVMDNTP FTPNGISRHALYFLKFFLMYLLVQPVDETRIHDKLKQSFDDNNRVALESPDQPTFKEAEG LKIFRDLIEMAKQLHAHSEQLQALDDFSEVMSHPELTASAMLLPKINNNSLKTFGIQTAK KWKNKRVNSQYLLPAMSHLTPNAQRLIFHAIALGIRYYVVRDEHGEELLMLTYDNITQVV YSNKVNDRPLQYLYDLFPTIEKAAKKNW >gi|238617806|gb|GG669615.1| GENE 12 14768 - 15916 581 382 aa, chain + ## HITS:1 COG:lin2293 KEGG:ns NR:ns ## COG: lin2293 COG4469 # Protein_GI_number: 16801357 # Func_class: R General function prediction only # Function: Competence protein # Organism: Listeria innocua # 7 184 11 189 371 101 34.0 2e-21 MLVAQLNGQLIQANEIKLKRKDKHEKRRYVCPRCQEPVMFKHGHSRIAHFSHFSVSECPF NENESQVHLEGKIRFKKEFLSLGHEAVLEHSFTQIGQRADVYIPDSQTVVEYQCSPISFS EIKRRTQGYLSVAKRVFWILGARYNTGIYHRDTVARFSRYHQQLGFYFVCYSDKDQYFRL HYQLKEVAGKIIGETQNFLNLKALLRFLRTSQYSSKKYQIGQNATRRLLLHQLKMIQQSN LNRNRTYLESVTDCYSFRKLFIGCPMICHGNRGSGLPIFNKSVLCWRTWVILRLFDSNRT LLSDEFLKGIFNISYEQFGLAFAQIVDNEPFFKAECRRLIIQLHDQGYIRHTVSGIQILK QPVWFSNYDEKRWHIMTTTQFL >gi|238617806|gb|GG669615.1| GENE 13 15957 - 17762 1435 601 aa, chain + ## HITS:1 COG:BH2856 KEGG:ns NR:ns ## COG: BH2856 COG1164 # Protein_GI_number: 15615419 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Bacillus halodurans # 5 601 3 598 598 595 49.0 1e-169 MSETQKLPLRKDVPADLTWDLTTIYQSDDQFEKDFVSVEKTLPSLKKLSGTLTQGAAALL TATETMLTAARKLEKVYVYAQLKNDQDTSEDGYQAMYAKAQALAAQFGAATAWFDPELLK LNDKQMTSYYEAQPKLRDYKRLYDQTFAKRAHILSNEVEEVLAGADDIFSSGEKTFGVLD NTDLSFPTVTDENGHQVQLSQGVYGILLESTNRDVRRQAFQKLYEVYSQFQHTLAATLTT NVKNHNFKANVRQYHSALEAALSSTEIPVKVYDNLISEVNKHLDLLHRYVALRKRILGLD ELHMYDLYTPLIGEKSPKYTFDESKKVALDALQVMGPQYVNHVKEEFNNRWIDVVENRYK RSGGYSSGTYDTNPFILLNWKDNLDNLYTLIHETGHSMHSYYASHNQPYQYGDYSIFVAE IASTTNENILTDYLLDKFKDDDKMKRYILNYYLDGFKGTVFRQTQFAEFEQYIHEQDAKG QPLTANFLDNYYRQLNQKYYGESVISDKEIGLEWSRIPHFYYNFYVYQYATGFAAASTLA DNIVNGDAEHVEKYLNYLKSGSSDTPINVMKKAGVDMTQPEYLEKAFRIFEERLDEFEKL F >gi|238617806|gb|GG669615.1| GENE 14 17966 - 18592 299 208 aa, chain - ## HITS:1 COG:lin0963 KEGG:ns NR:ns ## COG: lin0963 COG2761 # Protein_GI_number: 16800032 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis # Organism: Listeria innocua # 3 161 17 184 272 77 29.0 2e-14 MVLEIYLFIDPLNRHCYDAEKTIDNISRKLNTKVSVRFISMLNIKILNQMAAKAGDQFDR KLPYNIVLDSKAASFQGKKLGRHFLMDLQRELLLNDRDYNDDLVYGLAEDNGLDCRMFEE DRRSSLAENMFKCDQRMVHEMSVDEPATAVLFNSAVDNNGVLIKDFDYNSMFKFCAQSVK SVHHFEELIKQHQNNQGATILYPQSSFF >gi|238617806|gb|GG669615.1| GENE 15 19022 - 19672 339 216 aa, chain + ## HITS:1 COG:lin0966 KEGG:ns NR:ns ## COG: lin0966 COG2357 # Protein_GI_number: 16800035 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 5 198 4 197 222 258 67.0 8e-69 MVEDWDNFLIPYKQAVDELKVKLRGIRAQFLKLDGRSPIEFVTGRVKPVDSIKEKMVRRH ISEDRLEEDMEDIAGLRIMCQFVEDIYQVVDLLRKRTDINILEERDYVHNKKPSGYRSYH IIFEYPVQMLNGEKVILAEIQVRTLAMNFWATVEHSLNYKYKGEFPDDLKVRLERSAEAA FKLDEEMSEIRGELQETKGDSSGNDVRKSSDENSDI >gi|238617806|gb|GG669615.1| GENE 16 19653 - 20465 664 270 aa, chain + ## HITS:1 COG:BS_yjbN KEGG:ns NR:ns ## COG: BS_yjbN COG0061 # Protein_GI_number: 16078226 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Bacillus subtilis # 1 265 1 264 266 263 48.0 4e-70 MRIAIYSNLGEASNIVATSLKNQIEKSSDLVIDGLNPEIVISVGGDGTLLSAFHHYQDIN NKVRFIGIHTGHLGFYTDWRDYEVNDLIASLENDNGQSVTYPLLDIKVNYPGGGSADIGL ALNESTLKQISGSMVADVYIKNQLFESFRGDGLCVSTPSGSTAYNKSVGGAIINPRLNAI QMAEISSINNRVFRTLGSPLIIAPDEWIKIVPKSTHRTILTCDHQVITTRKVASVEFRIS QKRIAFAQYRHTQFWRRVSNSFIGEVNLDD >gi|238617806|gb|GG669615.1| GENE 17 20458 - 21351 247 297 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 42 252 43 249 285 99 31 6e-20 MTKFTWEYKGSSPIKVRTFIMGYGITRTLLKKIKYHGGQTLVNGEPSLVNRKLITNDVVT VVLPPEPENDNVPASDLPIQIVFEDEHFLVVNKSAGVASVPAHNRANDSLVNRVKGYYQR NHYANQKIHIVTRLDKDTSGLVIFAKHHFAHSVLDKQLKDHQIKKTYLAIVEGVFSTTHF EIYLPIKRAAGSLVKRQVGFPGKMSVTEAWTKQRLRQHTLLKLQIHTGRTHQIRVHMTAI GHPLVGDWLYNPEDKSFPRQALHCAGLRFFNPFAGHFVDCRAPLPDDMKTYLASHER >gi|238617806|gb|GG669615.1| GENE 18 21559 - 22233 300 224 aa, chain + ## HITS:1 COG:L55507 KEGG:ns NR:ns ## COG: L55507 COG0500 # Protein_GI_number: 15673975 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 1 214 67 270 273 147 35.0 2e-35 MLISRQRILQAGLFDGIIQKISTFLKAAPETILDVGCGEGTPLARLLRKRANADTAVGFD ISKDGINLATQHETRAFFCVADLARLPFNTSVFSTVIDLFSPSSYSEFNRVIKPGGQLIK IIPNSGYLQELRQLLYGTDQANSSYSNQKVLDLFTTHYPHSSIYPLKYQFQIPAGLQRDM MIMTPLHWGRGQDSHSSVQLETLTKITVDVSILINHFNDGGKNG >gi|238617806|gb|GG669615.1| GENE 19 22226 - 22738 435 170 aa, chain + ## HITS:1 COG:L161988 KEGG:ns NR:ns ## COG: L161988 COG0219 # Protein_GI_number: 15673131 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Lactococcus lactis # 3 170 2 169 169 208 57.0 4e-54 MANHIVLFEPLMPANTGNIARTCAGTDTILDLIEPLGFKLDNKHLKRAGLDYWNKVQINY HQNLPEFLKTVENPKNLFLVSKFANQDYTDPDYSDPKQDYYLLFGKETTGLPEPFMRKNP EKAIRIPQDDDHIRALNLSNSCAIVIYEVLRQQSFNHLERTHKYPHDKLK >gi|238617806|gb|GG669615.1| GENE 20 22880 - 25192 1788 770 aa, chain + ## HITS:1 COG:lin1423 KEGG:ns NR:ns ## COG: lin1423 COG1674 # Protein_GI_number: 16800491 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Listeria innocua # 28 766 24 753 762 621 47.0 1e-177 MATKRTRKRTTKKRGRPTKAKKPETFFSKYAVNILGAVVAVWALLGLFHAGIVGILMINI LRIFVGILYPLGLLTLIVGGLWLAGFSRLPKIKGRHFLGIVMVVIGVLTFISLVEYVQTA QPVEFVAVNWGKLTDDMISSNTTSNIGGGILSAICFYLLHMLVGKIGAGIISGLLVVAGG FVLFNISFGNVFLAIHRTIAFIGHAFGEIQQKIHLLRVKKATVQPDLQAKQQPLKEQTDA SKEERAVKPKFSTSSITISGMPVSDEPKDDVKQPPKESDTEPKPEQDKSNDVDLVNVQED DSYKLPTSDLLTQMSQDDQSGELKSIDHNAKVLQETLDSFGVKAEIKHVSLGPSVTKYEI HPDIGVKVSRIVNLTDDIALALAAKDIRIEAPIPGKSLVGIEVPNKKIATVSFRDVVEHQ PENHGHLLQVPLGKDVNGNVIAADLTKMPHLLIAGSTGSGKSVAINSIITSILLNAKPSQ VKLMLIDPKKVELGVYNGIPHLLSPVVSEPKKAARALQKVVSEMENRYELFAKYGQRKIS TFNEFAAKNNKDNDVKIQPMPYIVVIVDELADLMMTVSNDVEAAIIRLAQMGRAAGIHMI LATQRPSVDVITGLIKANVPSRIAFAVSSGIDSRTIIDTNGAEKLLGRGDMLFLPIDSNT PIRVQGAFIPDKDVSRVVKFITDQQSADYDESMMVSDEEIKQEDQQESEDDLFDDALEFV INEQKASTSLLQRHFRIGYNRAARLIDDLQNRGYIGPQNGSKPREVFKKP >gi|238617806|gb|GG669615.1| GENE 21 25549 - 25932 271 127 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0685 NR:ns ## KEGG: Lbuc_0685 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 126 1 126 127 90 36.0 3e-17 MQFPSWATMIAVFFMQLAVLLFIATVMILIRKKIMPHKRLKVVPVDLWPPFILFFIHQLS ASAASGSVIPQIVIIWMTISLVALLWQILTDKKMTFRRFFVLFWRLSDLVLLVSWIYTFV YMIIQAG >gi|238617806|gb|GG669615.1| GENE 22 26219 - 26644 406 141 aa, chain + ## HITS:1 COG:BS_yllB KEGG:ns NR:ns ## COG: BS_yllB COG2001 # Protein_GI_number: 16078577 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 139 1 139 143 202 64.0 1e-52 MLLGEFQHNIDAKGRIIIPAKFRQDLGNKFVITRGMDGCLFGYPMSEWKKVEDKIDSLSV NKRDVRAFTRFFFSAAVECEFDKQGRVNIPSILRNFAKIEKKCVVVGVSNRIEVWSEPAW HAFTSDAAAHFDEIAENIIDL >gi|238617806|gb|GG669615.1| GENE 23 26687 - 27634 781 315 aa, chain + ## HITS:1 COG:lin2147 KEGG:ns NR:ns ## COG: lin2147 COG0275 # Protein_GI_number: 16801213 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Listeria innocua # 4 312 2 309 312 376 62.0 1e-104 MSGFKHVTVLLHEAVDGLDVDPNGTYVDATLGGGGHTTEILKRIDKGHLYSFDQDEEAIS YNQQHLRQYVENDKLTLIHDNFRNIKGALADRGISKIDGIVYDLGVSSPQFDEAGRGFSY RFEARLDMRMDQDNPVDAWKVINEWPYEKLVRIFYRYGEEKFSKQIARRIERTREDHPIN TTTDLVTLIKEAIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQSLELLAVGGRI SVITFQSLEDRLVKTMFKEKASLPELPPNLPVIPKELQPKYKLITRKPIIPNEDELADNH RAHSAKLRIIERTKI >gi|238617806|gb|GG669615.1| GENE 24 27656 - 28033 321 125 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0688 NR:ns ## KEGG: Lbuc_0688 # Name: not_defined # Def: cell division protein FtsL # Organism: L.buchneri # Pathway: not_defined # 1 125 1 124 124 112 64.0 7e-24 MAQNNLARNLAQEEPQTYISTPKRVQTPEIGANQRLGLNAFEKTLIACGSVMLTVLMLVV VSSKIALSDSQHQLQHLDTRITNIHNNNTNLQQQIGELQSSSRLQKIAKENGMSLSNGNI RNVTK >gi|238617806|gb|GG669615.1| GENE 25 28030 - 30189 1873 719 aa, chain + ## HITS:1 COG:lin2145 KEGG:ns NR:ns ## COG: lin2145 COG0768 # Protein_GI_number: 16801211 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 12 708 1 703 752 500 40.0 1e-141 MKDPSNRSEENLKARKNRKLVGISLLLIFFIVFFVLSLRLVVIAVGKNVKHVNLNERAEK LYNQTQTLKAKRGTIYDANGDPIAEDTSTYSLYAVLDKNQRGLNDKPLYVVNKAKTARVL SKYLPITQKKALKILSPKDGHPFQVEFGSAGTNISLITKKKIDAKHLAGINFVQQQARLY PNGVFSSNLIGVATSQNNKKTGMSDLVGQMGIEQAFNKQLAGTNGFRNADYDVYGYKLPG KKQKERKVKNGDNIYTTIDSRIQTLLESEMNSVQSQVHPASLNAILMDAKTGKIVAESQR PSFNAATLSGIGKAWTNTFTSDTFEPGSTMKIFTLSASIDSGHFHGNDTYESGRYSIDGK IVPDWDTAGWGYITYNKGFALSSNVAMAHLEQQMGPKTWKKYIQKFGFLKSTNSGLPNEL TGKIQFNYPIEQADTAFGQGIEITPIQMMQALTAVSNNGKMMKPYFISKVTDPNTGKTVK KYGPKEIGTPIRSSTAKKVRDHMQDVVYKSYGIGQDYKIKGYRVAAKTGTAQVSNGYGGY ASGDDSYLYSVAGMVPANNPRYVMYITMKQPKLTGTKTATQLMAEIFKPVIVRALQNSNT KQTVVKKQVPSVAYQTTTEAKKVLNEKNFEVVSIGDGGTVIKQSPAANTTLAERKRVFIL TNGTWKMPRIIGWNKKDVAEFCQLTGLKLESTGSGYADSQSINFSQTIKKGQTLKANFE >gi|238617806|gb|GG669615.1| GENE 26 30239 - 31198 835 319 aa, chain + ## HITS:1 COG:lin2143 KEGG:ns NR:ns ## COG: lin2143 COG0472 # Protein_GI_number: 16801209 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Listeria innocua # 11 319 13 323 324 306 54.0 3e-83 MGNWLVSSIGAFVITALFMPSLIKYFRSKHEGQMIREEGPRWHEKKSGTPTMGGILFIIA IVIADLAVAGFQGGLTPTLSILLFVLVAYGLIGMWDDTIKLFRRQNEGLKAWQKLLGQII AAIVFSIVYSHEGFPMAIKIPFASDWRIGYWYILFIVFWLVGFSNAVNLTDGLDGLVSGL GTISFAAYGIIAAVQHQNDVAMFCFTVVGGLLAFFIFNHKPAKIFMGDMGSLALGGALAC VSILVHHEFSLLVIGIIYVLETASVMIQVASFKLTGKRVFKMTPIHHHFEMCGWSEWKID IVFWSIGLIAAVISMITIV >gi|238617806|gb|GG669615.1| GENE 27 31341 - 32723 1259 460 aa, chain + ## HITS:1 COG:lin2142 KEGG:ns NR:ns ## COG: lin2142 COG0771 # Protein_GI_number: 16801208 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Listeria innocua # 1 458 1 455 455 431 50.0 1e-120 MKMIDDYKGKRILVLGAGKSGTHAAELLQQLGATVVLNDAKPSDQLPEVVELEDRGIKTI TGKQTADILDNHFDLMVKNPGIPYDNEVVARAVSEKMPIITEVELAAQMTDAEIIGVTGS NGKTTTVTMITKILNEERKKGHAYAAGNIGVSATETALKSTADDTIVMELSSFMLLGIKK LHPHVAVLTNIFSNHLDYHKTRKNYVNAKMRITMNQTPDDFFVVNFDSDEWRQLSKRSKA QIVPFARTSEIDRGAYEKNGKLYYNDEFIMNADDIKVPGQQNVENALAAIATAKILGKSN LAITNVLETFTGVRHRVQFVLEADGRKFYNDSKATDIEATQIALEGFDHPVVLLAGGLDR GYTFDKMVPQFKQHVKAAVLFGQTADLLEESLQKAGVKNITKVDNLDEAVPAAYHYSDSG DIILLSPANASWDQFKTFEQRGDEFIKDVEKLTHKQEEKQ >gi|238617806|gb|GG669615.1| GENE 28 32720 - 33811 936 363 aa, chain + ## HITS:1 COG:BS_murG KEGG:ns NR:ns ## COG: BS_murG COG0707 # Protein_GI_number: 16078586 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus subtilis # 1 361 1 361 363 369 51.0 1e-102 MRLIISGGGTGGHIYPALAIIEDLMKQEPDSEVLYVGSERGLESAIVPKQGIKFVALRIQ GFKRSLSLENLKTVALFLKSVHESKKMIKDFKPDVVIGTGGYVSGAVVYAAAKAHVPTII HEQNSAVGLTNRFLSRYVDKIAIGFHEAKAQFPEEKVIFTGNPRAQQVAHMHSDFKWSSI GLKDDEATVLIFGGSQGAPAINNAVIASVNEFNKRTYQVVFVTGQKRYDGVMEKLGKTQI KDNIKILPYINNMPQVLPKVDLIIGRSGATSIAEITALGIPAVLIPSPYVTADHQTKNTM SLVTRGAALMIKEADLNPKNLLKAIDQLMHDSDEREKMSENSKKLGVVNSADQILDIARG LIR >gi|238617806|gb|GG669615.1| GENE 29 33934 - 34764 476 276 aa, chain + ## HITS:1 COG:BS_divIB KEGG:ns NR:ns ## COG: BS_divIB COG1589 # Protein_GI_number: 16078588 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Bacillus subtilis # 46 275 30 258 263 122 33.0 7e-28 MGRKNDHDEELTPWQKASGQSSLGTNSPKKKIKRRLVKDYQIRNFRRMWPFIIIFLMIIC AMGFLISPISRVKSIKISGNEIVSIKQIKHYSPVKKGMSLFGVWGKTDKLAGELKNRSQR MQSVKINLVNFNRIHIKVEEYPTIGYLYTDGGYQPILKSGVIIKNKVLNPRDGFPVLKKF KNPRTLRRTIRQYRRISPPVRAAINTISYSPVKSNRDRVYLQMNDGNKVFASISSFGDKM DYYPSINAKLKVKSIINLEVGAYSYPLTKHESKVKS >gi|238617806|gb|GG669615.1| GENE 30 34872 - 36176 1105 434 aa, chain + ## HITS:1 COG:L0207 KEGG:ns NR:ns ## COG: L0207 COG0849 # Protein_GI_number: 15673852 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Lactococcus lactis # 1 434 1 456 456 380 45.0 1e-105 MDNSGLYVGLDIGTTSIKVIVAEKVKGQLNVIGVGNEPSNGLSRGVIVDIDQAAEAIRSA VSQAQEKASIEIKDVIVSVPANILRIEDCNGLVTLDDQSREITVEDVRNVAVSALGTSLP QEREVIDIQPEEFIVDGFDDIKDPRGMVGVRLEMRGKLITGSKGIMHNLKKAVEKAGLNI ISTVLTPLAEGHEILNDGEQDFGTIIIDLGGGQTTASVIHDHQLKYATTDPEGGEYITKD ISIVLNTSMENAEKIKRDYGYADSLQASADNQFPVDIVGQAEPTYIDERYLAEIIEARLS QIFDRIKSRLDQVQALELPGGIVLTGGVAALPGIAELAADQFNTNVRVYIPDQMGLRHPS FTAGLSLVSYFSDLSDVDMIVRSAVGATSTKVPKLTDPQDTQVPVSSKSDKPKRKTQKKK RGEGIKNFFSDFFD >gi|238617806|gb|GG669615.1| GENE 31 36201 - 37523 1420 440 aa, chain + ## HITS:1 COG:SP1666 KEGG:ns NR:ns ## COG: SP1666 COG0206 # Protein_GI_number: 15901501 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 435 1 419 419 375 54.0 1e-104 MEYSLDSTENHGAVIKVIGVGGGGSNAVNTMISSDVKGVEFIVANTDVQALSTSKAETKI QLGPKLTRGLGAGSNPEIGAKAAEESEQELSEALEGADMVFVTAGMGGGTGNGAAPIVAK IAKDQGALTVGVVTRPFSFEGPKRSKYADEGVSQLKDNVDTLIVIANNRLLDMIDKKTPM MDAFKEADNVLRQGVQGISDLITSPGYVNLDFADVKTTMQDQGSALMGVGAANGEDRTKK ATEKAISSPLLEVSIDGAEQVLLNITGGPDLSLFEAQDASDIVSQAATSDVNIIFGTSID ESLGDEVRVTVIATGIDKKAAEQGRLETRRTRTASPSARPQSSAHPRQFDGHRNSSQETS NSNSSANDSHTDPLGNWDIRKQPTTARPSVPENDEFNDVEKKDFDPFQPDVNSDKSGKTD NDNSQDDIPPFFKHRRRNNK >gi|238617806|gb|GG669615.1| GENE 32 37588 - 37938 237 116 aa, chain + ## HITS:1 COG:BH2549 KEGG:ns NR:ns ## COG: BH2549 COG1799 # Protein_GI_number: 15615112 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 28 115 51 136 149 65 40.0 2e-11 MSEKFNFANFFGMESDKPKNEDAKLVDNVVPLTRKDLETNRNIVVFEPINYTDVDTIAQK LLEDSAVIIKLGKLDIKSAERMVDFLNGVLFAIHGTIDRLDKNIFICSPKNFKVTK >gi|238617806|gb|GG669615.1| GENE 33 38029 - 38259 283 76 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0697 NR:ns ## KEGG: Lbuc_0697 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 72 20 91 91 92 76.0 4e-18 MLAIVIYALMSWFPNAYGTAFGRFLGRIVEPFERLFNFASVGMISFAPVVALIVLSLVQG GITYLGNLIIGYGYGY >gi|238617806|gb|GG669615.1| GENE 34 38281 - 39075 1359 264 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509386|ref|ZP_03939435.1| ribosomal protein S4e [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 264 1 264 264 528 100 1e-149 MAVDANVSQHFRPDEVPFLESIDHLSGQVENEYRPILTEFLNPRQLYILESIINRHDGIH FSTYGGYSGAELQRAIVYPEYFTPKTDDFRITAFEIDYPSKFATLAHGKILGSLMGAGIE RNVVGDIITDGLKWQFMVQSEMADYVKAQVDHIGKIKVKLEDISPEGVITPVDESETLTT TVSSLRVDALISDGFHISRHHAKELVDAGDVRINWVDTTRPDFELSTKDIISVRGYGRIV IKEITGMTKKDKIRIIISVYNRNK >gi|238617806|gb|GG669615.1| GENE 35 39091 - 39762 769 223 aa, chain + ## HITS:1 COG:BS_divIVA KEGG:ns NR:ns ## COG: BS_divIVA COG3599 # Protein_GI_number: 16078606 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Bacillus subtilis # 1 175 1 164 164 125 43.0 7e-29 MVLSPQDIHNKEFSTKLRGYNIDEVNDFLDQVIKDYQIILEENKDLRSQLSESKDKLSYF NDLKDSLNQSILVAQEAADKVKSNSKKEAEITNREAQKKADDIVKTADEKSTQILEEASK RAKKLAIETDDLKKNTRVFRQRLEVMLESQLAVIKGSDWDHLVEDGPTTTYEDIEKVVGD LDNPTNSDVESGNKQGNNADAVESTPTTDDKLQTVVIYPDSQK >gi|238617806|gb|GG669615.1| GENE 36 40043 - 42850 2374 935 aa, chain + ## HITS:1 COG:SP1659 KEGG:ns NR:ns ## COG: SP1659 COG0060 # Protein_GI_number: 15901494 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 935 1 930 930 1154 58.0 0 MRVKDTLNLGKTKFKMRGNLPVKEVERQKAWEENRVYEQRQKLNEGKPSFVLHDGPPYAN GDIHMGHAMNKISKDIIVRYKSMTGYRAPYVPGWDTHGLPIEQKLTQAGYDRKKMSTNDF RKLCQEYAMKQVQRQMDEFKRLGVSGDWDHPYLTLQHEFEAAEVRVFGAFAKRGLIYKGK KPVYWSWSSESALAEAEVEYHDVTSPSAFYGEKVIDGKGVLEDDNTFMVVWTTTPWTIPA SEGITVDADFDYAVVQPEDDERKFVIASELLEKDEGLFGWKNVKIVKTVKGRDMEGILAE HPFDHSRKLLTMLGDFVTLDAGTGLVHTAPGYGEDDFNIGRKYGLDIFAPVDDRGYLTKE SGEDFAGVFYEDANKIALDKLKKAGLLLDYMPLNHSYPFDWRTKKPIIFRATPQWFASVD KIKDDILNAIEDVTFYPDWGKVRLSNMIKNRGDWVISRQRVWGVPLPIFYGEDGEAIITQ ETIDHVADLFAKYGSDVWFEREPKDLLPDGFTSEHSPNGKFTKENDIMDVWFDSGSSHQG VLAARPELTYPADMYLEGSDQYRGWFNSSLITSVAVSNKAPYKSIVSQGFTLDGKGHKMS KSLGNTIAPIDIIKKMGAEIVRLWVTSVDTSADVRVSQENFVKISDAYKKIRNTMRFLLA NTSDFDPKTNAVAFDEMESQDQYMTVLLNKFLGEARDSFEQYDFLTFYKKFLNFVTTDLS AFYLDMAKDIVYIDKKDGHKRRSMQTVMYHAVTTLTKLMTPVLPHTAEEIWGFLKEPEDF VQLTDIPKPQHFDNEADILEEWTKFMTYRDDVLKVLEEARDAKEIGKASEASLTIYATTE VKDLFESLNVDLATVLLVSQLTVKDFTDAPDNATKFDSDGLALLVEPAKGKTCERCRLVR TDVGSDSDYPTFCHSCAEIVRSEFPETVAEGFEAK >gi|238617806|gb|GG669615.1| GENE 37 42982 - 43197 336 71 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0701 NR:ns ## KEGG: Lbuc_0701 # Name: not_defined # Def: Cold-shock protein DNA-binding protein # Organism: L.buchneri # Pathway: not_defined # 1 68 1 69 69 79 63.0 7e-14 MLYGKVKTYNAKNGFGFITQDQGDNLFFFKNAFHGEDYSRIVPGIRVSYVVVEGQKGPQA AKAQIVEEAGE >gi|238617806|gb|GG669615.1| GENE 38 43257 - 43799 347 180 aa, chain + ## HITS:1 COG:SP0989 KEGG:ns NR:ns ## COG: SP0989 COG0494 # Protein_GI_number: 15900864 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 180 1 181 181 152 46.0 3e-37 MDFEEHVVDSQNIYDGAIINVEKQTVRLPDGQTAFREIVHHSGAIGVLALTKDNKIILEK QWRAPVEATTIEIPAGKVDNRDTDFHHAVIRELNEEIRYTPKHVEELFGFYSSVGFSDEY MKLYLATDLEPVKDKLPRDKGEFLQIIEKTLDEAVSMITNGDIKDAKTIMAIQHWQLMQK >gi|238617806|gb|GG669615.1| GENE 39 43812 - 44102 169 96 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0703 NR:ns ## KEGG: Lbuc_0703 # Name: not_defined # Def: small membrane protein # Organism: L.buchneri # Pathway: not_defined # 1 96 1 109 109 98 54.0 7e-20 MVTDDKKESKALTREQYRKLKQQEDDDFKQRDKKRVEVERAYARTHQQNPGDDAAIADAN QFKTPRWHKINRRLNWTIGILAVLIVIVYLVLFFVN >gi|238617806|gb|GG669615.1| GENE 40 44172 - 44873 716 233 aa, chain + ## HITS:1 COG:BH1279 KEGG:ns NR:ns ## COG: BH1279 COG0775 # Protein_GI_number: 15613842 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Bacillus halodurans # 4 223 5 224 231 190 44.0 2e-48 MTYGVICAMDEELAILKEALVNESAQNYGQMNFYTGQIHGQDVVLVKSGIGKVQAGITTS TLINEYHVDAVINSGSAGGIGDGLSIGDIVISTETAYHDVDVTASNYKVGQLPGFPARFE ASKDLEDAIAQAAKESGVTAHFGLIVSGDQFIADSKRIQQIKDNFPDALCSEMEGAAVGQ VAFQNHVPYAVIRAMSDVGDENAEVSFDQFIITAGKKSGQMLIDLFENEAARK >gi|238617806|gb|GG669615.1| GENE 41 44880 - 46049 903 389 aa, chain + ## HITS:1 COG:lin1548 KEGG:ns NR:ns ## COG: lin1548 COG1104 # Protein_GI_number: 16800616 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Listeria innocua # 4 380 5 379 382 372 49.0 1e-103 MEEIYLDNAATTRVSDEVYAELMDKYKNVYGNASTLYGLGRQSKEVMEHAREVIAKSINA DPEEIVFTSGGSESDNTAVMQTAFARQSLGKHIITTAIEHEAILRPMQALEKLGFRITYL PVDQYGNISLDDFKAALDDDTILVSIMTGNNEVGSVMPIHEIGEILKDHQAWFHTDAVQA YGLLDIDVQRDHIDLLSTSAHKINGPKMIGFLYRRTGVNFPSLIKGGDQETKRRAGTENV PAIAGFARAVETITSEEKAHRQAKYLKFKKYIADKLTKNGIDFDINGQITEDNLNHVFNI WLKGISTYVMQTNLDLAGIAVSGGSACTAGSIEPSHVLVAMYGKDSPRISESIRISFGRY NTYEDLDKLVAAITQTVKRLKNKNREVKL >gi|238617806|gb|GG669615.1| GENE 42 46049 - 46393 396 114 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0706 NR:ns ## KEGG: Lbuc_0706 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 112 1 112 114 144 65.0 1e-33 MAFSTTAKVSGDSHAYELNSEVKKYTLKDLGFTETKAGNYSLERSLDPNSPYGTGYKFKM MVSKGLDGFRMSITTGNGLQKVNIFKNSETQESVDQFNFLINNLVDREVLKRTD >gi|238617806|gb|GG669615.1| GENE 43 46812 - 47840 1137 342 aa, chain + ## HITS:1 COG:PM0566 KEGG:ns NR:ns ## COG: PM0566 COG0115 # Protein_GI_number: 15602431 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Pasteurella multocida # 6 341 2 339 340 390 57.0 1e-108 MAKQDVKDLDWSNLGFTYRDLPYSYNEEFKDGKWQNGGLTTDSTLTFSEAAEDLHYGQEV FEGMKAYRTKDGGINLFRPEMNAERMANSAKRLVMEQYPKDKFVEAVKAVVKANQEFVPP YGSGGSLYIRPFMVGTEPVVGVSPSTEYTFHIYATPVGAYIKGLNPMPYTVSDYDRAAGA GTGQAKTAGNYASSLLPSILAKKAGFADCLYLDPREHKYIDEFGGANFYGVTKDGQFLTP KSDSILPSITKKSILQIAKDQGLNPQETRIAIDDLDNLAEAGAMGTAAVISPVGSLTYKG NKHVFYSETEAGPVTQKLYDTLFGIQEGDVEDKHGWVESVDL >gi|238617806|gb|GG669615.1| GENE 44 48059 - 49099 959 346 aa, chain + ## HITS:1 COG:SP0856 KEGG:ns NR:ns ## COG: SP0856 COG0115 # Protein_GI_number: 15900741 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Streptococcus pneumoniae TIGR4 # 10 343 5 339 340 509 74.0 1e-144 MAKAKPASELDYNNLGFNYMDLPYRFLAHYSDGKWDAGKLTEDSTLHISEGSTSLHYGQA DFEGLKAYRTKDGSINLFRPDMNAKRMHNSCERLLMPPYPEDKFIEAVKQVVAANADYVP PYGTGATLYLRPLMIGIGGNIGVHPASEYLFTIFAMPVGAYYKGGLKPTNFTTSYYDRAA PHGTGQSKVGGNYGGSLLPGDEAHKAGYSDVIYLDPATHTKIEEAGSANFFGITKDNEFV TPKSPSILPSITKYSALYLAEHRLGLKAVQGDVFINDLDRFKEAGAMGTAAVISPIGGIE YKDKLHVFYSETEVAPLTRKLYDELTGIQFGDVEAPEGWIQKVPLN >gi|238617806|gb|GG669615.1| GENE 45 49252 - 50100 782 282 aa, chain + ## HITS:1 COG:lin0579 KEGG:ns NR:ns ## COG: lin0579 COG1387 # Protein_GI_number: 16799654 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Histidinol phosphatase and related hydrolases of the PHP family # Organism: Listeria innocua # 7 276 1 270 275 250 48.0 2e-66 MGDNDMLKREGHSHTEFCPHGSGDDVELMIQRAIHLGFKEYSITEHAPLPPELQNEYAGQ KTGLTEASMSMSDLDAYFKKMTLMKTKYADQIHIHIGFEVDYLADFVSWTRDFLDEYGPR TDDNILSVHFMKGKDDKYWCVDDTMQDFEIGLLSESENAQTLFATYFNLVDESVTASLGQ YAPNRIGHMTLIRKFQDRFNLDSQYNETNQKLIQEILRKILDRGLQLDFNAAGLYKAYCN QPYPNFKIAIQAQQMGIQLIYGSDAHSVAEIGHGYHGLAEFF >gi|238617806|gb|GG669615.1| GENE 46 50382 - 50567 63 61 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSTTSLDFIGGLIIIVFEKNLCVLIIALNHILYKKRPRKLKVSSRGRILIAVPPQFAPTS R >gi|238617806|gb|GG669615.1| GENE 47 50566 - 51723 751 385 aa, chain + ## HITS:1 COG:lin0578 KEGG:ns NR:ns ## COG: lin0578 COG3705 # Protein_GI_number: 16799653 # Func_class: E Amino acid transport and metabolism # Function: ATP phosphoribosyltransferase involved in histidine biosynthesis # Organism: Listeria innocua # 3 357 4 359 392 224 36.0 2e-58 MKNKNLPNGTRDEFGVQAEVKEAIQMKLLGLFKDRGFRKLTTPVLEYSDVFEPLSTDNYR PYQFLDEQGETLVLRPDLTLPVARVMSTTGVDLPVKWYYSGDVFRVKKRLSGSYNQTTQA GIEIIGYKGIKADWECLQVALSGCQQMGLEDVTVEISQAKFVDTVINQLELPEPTRNSLK MALFDKDLNRYQSLWSPLVHTKFEKFLAEWPWLFGDFDQVIRIVETLPRSAELEAIIKDL IATKTFINQQFPNFQVTLDLSVRSPQSYYTGMAFRGFTGKSADYLFSGGRYDDLLTNFQK VKVSAVGVAFDVDALVERTALPANKQQTLIYFDDDQWQLAEKKLQEIPNSTLCLTQSVQA AKRLADSDGNKLLDLTEGRSQNGTN >gi|238617806|gb|GG669615.1| GENE 48 51710 - 52363 501 217 aa, chain + ## HITS:1 COG:lin0577 KEGG:ns NR:ns ## COG: lin0577 COG0040 # Protein_GI_number: 16799652 # Func_class: E Amino acid transport and metabolism # Function: ATP phosphoribosyltransferase # Organism: Listeria innocua # 1 216 1 213 213 228 54.0 7e-60 MEPIKIALTKGRTEQQVVPLLEASGINCQGLKNKGRKLIFNDDPRYDFILVKGPDVLTYL NSGTVQIGIVGSDVLDEQENSQYAMLNLSVGKCRFVLASTADFNPQQQRRKIIATKYPNI TKRYFEGIGEDVEIIKIEGSVELAPLIGLADAIVDIVETGNTLRENNLRVYAKLQPVNTK LVVNRLALRQYQPQIKTLISNLQTADRQAVKAKLIRE >gi|238617806|gb|GG669615.1| GENE 49 52369 - 52953 556 194 aa, chain + ## HITS:1 COG:lin0575 KEGG:ns NR:ns ## COG: lin0575 COG0131 # Protein_GI_number: 16799650 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate dehydratase # Organism: Listeria innocua # 1 194 1 194 194 246 63.0 2e-65 MRTATISRNTNETQIELQLNLDDYSTIQVDTGIGFLNHMLTAFAKHGRFGLIVNAKGDLD VDPHHTTEDVGIALGLALKEALGDKAGIERFGSALIPLDETLSRVVIDLSGRSYLVFKAE FANDHLGGYDTEVTEDFFQAFAFNAELNLHAEVLYGRNTHHKIETLFKALGRALRAAVTL NPEIKGIPSTKGVI >gi|238617806|gb|GG669615.1| GENE 50 52953 - 53579 557 208 aa, chain + ## HITS:1 COG:lin0574 KEGG:ns NR:ns ## COG: lin0574 COG0118 # Protein_GI_number: 16799649 # Func_class: E Amino acid transport and metabolism # Function: Glutamine amidotransferase # Organism: Listeria innocua # 1 207 1 207 208 213 47.0 2e-55 MIIVIDYDTGNTRNVKKALDFLGVENKLSADPQEITNADGVILPGVGAFKKAIDALNERQ LIPVIQQVAKQGTPMLGICLGMQLLFDRSLEFGDTTGLSLIKGDVIPIPTNLGVKVPHMG WDLNQVTQSDPIADIFDQQFSYFVHSFYVKTSADKVLATTDYGVQIPSIVRQNNVIGMQF HPEKSGQVGLNGLTKFKEMVENADYSRN >gi|238617806|gb|GG669615.1| GENE 51 53557 - 54285 808 242 aa, chain + ## HITS:1 COG:lin0573 KEGG:ns NR:ns ## COG: lin0573 COG0106 # Protein_GI_number: 16799648 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase # Organism: Listeria innocua # 1 240 1 238 240 228 51.0 6e-60 MQIIPAIDLKNQESVRLYQGDFNQTTLISESPVQQALAIERAGLTNLHLVDLDGAKSGRP VNRAIIQQICEQTGLAVEVGGGIRSLSQINTYLTSGVTRVILGSAALNDPELVQEAIKQF GADQIVVGIDGKDGLVAVSGWLEQSTVKMDELMASMVAFGVKTFIVTDISRDGTMSGPNG DQLSHLQKQFTAATVIASGGIRNVTDLNQLADLGIRAAIVGKAMATGDLPLQTLAEVNQN VG >gi|238617806|gb|GG669615.1| GENE 52 54275 - 55033 790 252 aa, chain + ## HITS:1 COG:CAC0941 KEGG:ns NR:ns ## COG: CAC0941 COG0107 # Protein_GI_number: 15894228 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate synthase # Organism: Clostridium acetobutylicum # 1 252 1 252 253 311 58.0 6e-85 MLAKRIIPCLDVDHGRVKKGVNFVNLQDVGDPTEIAAAYQKQGADELVFLDITATNEKRK AIVETIEQVASQVFMPLTVGGGIHDVSDMMNLLRAGADKTAVNSAAVRHPELITQGAEKF GSQCVVLAIDAKFNPQTQTYQVYVNGGRKATNLDAVQWAKEGVKRGAGELLVTSMDKDGT KSGYDIDLYRQLTKAVSVPVIASGGCGKLTDFSDVFRESDVDGALAASVFHFGELTISDV KQQLKTDGVIVR >gi|238617806|gb|GG669615.1| GENE 53 55111 - 55365 113 84 aa, chain + ## HITS:1 COG:lin0571 KEGG:ns NR:ns ## COG: lin0571 COG0139 # Protein_GI_number: 16799646 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosyl-AMP cyclohydrolase # Organism: Listeria innocua # 1 80 26 104 105 110 62.0 6e-25 MAYVNEESYQRSLKTRQTWFWSRSRQELWHKGETSGNTQEIVSMAIDCDEDTLLMRVIPA GPACHTGHTSCFYRNVLEEEKDNG >gi|238617806|gb|GG669615.1| GENE 54 55358 - 55684 511 108 aa, chain + ## HITS:1 COG:lin0570 KEGG:ns NR:ns ## COG: lin0570 COG0140 # Protein_GI_number: 16799645 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosyl-ATP pyrophosphohydrolase # Organism: Listeria innocua # 6 107 2 102 103 99 59.0 2e-21 MAEQNLDDLYQLILERKNNPEKGSYTDYLFTKGLDKILKKVGEEATEVVVAAKNDSDPDF ILEVADLAYHVEVLMAERGITTTQIKEELASREGRQSKIQDRKDIKNW >gi|238617806|gb|GG669615.1| GENE 55 55712 - 56797 659 361 aa, chain + ## HITS:1 COG:BH1665 KEGG:ns NR:ns ## COG: BH1665 COG0079 # Protein_GI_number: 15614228 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Bacillus halodurans # 2 352 3 356 369 261 37.0 2e-69 MVKESVKHLNPYVPEQTLDDLKKQYGLKKLVRLSANENAFGTSPEVARALDSWHFSDANL YPDSNAEVLRRSIATRFNISEDHLLFGNGLDEVIELLCRVILEPGDEVIDPALTFSEYQL HSQIEGAKIKRVALDDAGYLNLAAIKRQLTPKTKIIWICNPNNPTGTFLEPATIKSFLEA IPDSVTVIVDEAYIDFVNEKNVSVIQLTKQFNNLVVLRTLSKAYGLANFRVGYAVCNPPL MAYLQAARLPYNLSTFAEVAATAAFKDTEFVKRVVNTIAEERIKWNRFLTKQKLPFYESS ANFIFFKAGNSDKLHDYLLRNGYLIRNGLKPGWLRITIGRPEDNSAVQKLMAAYFNASFN M >gi|238617806|gb|GG669615.1| GENE 56 56900 - 58024 950 374 aa, chain + ## HITS:1 COG:L52034 KEGG:ns NR:ns ## COG: L52034 COG0482 # Protein_GI_number: 15672819 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Lactococcus lactis # 5 373 15 383 384 539 73.0 1e-153 MQDNSQTRVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDDTDENGVCTATEDYKDVA KVANKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALELG ADYIATGHYAQLTRDEDGHNHLLRASDGNKDQTYFLSQLSANQLDRVMFPIGNLVKPEVR EIARKAGLATADKKDSVGICFIGEKNFKQFLGHYLPATPGKMMTVDGEVKGQHDGLMYYT IGQRRGLGIGGDGVDNQPWFVVGKDLKKNILYVGKGYHNELLYADYLEASDIHWVNNLDR GQDFHCTAKFRYRQKDTGVTVHLSDDGQKVRVDFDAPVRAITPGQAVVFYDGEECLGSAI IDAAYKQAEELQYV >gi|238617806|gb|GG669615.1| GENE 57 58183 - 59103 797 306 aa, chain - ## HITS:1 COG:BS_ywkB KEGG:ns NR:ns ## COG: BS_ywkB COG0679 # Protein_GI_number: 16080757 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Bacillus subtilis # 5 304 6 317 319 114 29.0 2e-25 MLQTLLFALIPIITTIGIGYFAAYRNDFDDHDSQQFVKLVMNYALPFSVFAGIWGTPRKI IIADIPLAGWLLVGMVGCYIVLIIAYRFGFRLPLDLSSLRALSVADPSVPFIGSAILPLL FGNQVSAITIGLCTLIINILLLPAVFASLAKEGEVTSLGQRLISTFKKPLVISALLGFVI ALAGWQMPAELENTFMVLGKVAGGLALFSIGIVLFTRRITINLSIGVSVFAKNVVFPCII WLIMLAVNAPAGLINIVVLTLAIPTATMPTTLAIQFKINESEIASIQFWSTVFSFITMPI FMWLIG >gi|238617806|gb|GG669615.1| GENE 58 59457 - 60005 360 182 aa, chain + ## HITS:1 COG:SP0984 KEGG:ns NR:ns ## COG: SP0984 COG0406 # Protein_GI_number: 15900859 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 4 171 39 204 206 120 39.0 2e-27 MALLAAHFQDISFNHIYASPIKRARVTAETIGRRLKSHPAISLLSRLEEFNLGKMEGMKF SDVEKRYPQEFENFRNHPDLYDPAEIGGESYLDVINRMTPAIIEIINSNPHKNVMIVSHG AALNAEMNHLLGTSLADLRKRGGLANTSTTIIESHDAGQSFSLIKWNDTSYLNKKLDETD LV >gi|238617806|gb|GG669615.1| GENE 59 60015 - 60782 800 255 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0721 NR:ns ## KEGG: Lbuc_0721 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 4 244 3 243 246 311 77.0 2e-83 MKKNNSDKIKELQKKNQENQRKYTKKREDEEKKANQLIHQMVSKIDANPHDYHHYYDLAT LLVEGKDYEQAEELLMKALGIFDQSSEDIKDTLKFGLGNVYYAAQEYDKAIKIFQEINDD KLQAEAYIMLAQSYMAKGDNKRAMVFALSAQSTRQKDPAVNEMIGDNLLALGNFSQAAEF YDLVLTAEPQNGRANFNRGLVAMVADEPFESYFKKANQYDPAYFNKGQKKLKDIEKFIQL NGTKKAHDQHGKKTK >gi|238617806|gb|GG669615.1| GENE 60 60846 - 63332 1915 828 aa, chain + ## HITS:1 COG:lin1544 KEGG:ns NR:ns ## COG: lin1544 COG0507 # Protein_GI_number: 16800612 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Listeria innocua # 12 822 15 795 798 646 44.0 0 MGLFEPQDNLNQNMYVDGRLKAIFFSSNDSFYKVLLIEITDTNLNWPESEIVVTGNFGDV VEENSYHFTGKVIDHPRYGKQFQAANYTSLIATTKEGVIKYLSGDRFPGIGKQTAQRVVK VLGDDAIQRINADGRVLDQVPITQKQRDAILDNLSVDDGLEKVIVGLNSYGFSSKIASDI YEKYHGDALKIISENPYQLVEDIRGISFKRADAIALKLGLTAASTERIRAGLLYAIQELC FENGDTYTTTSALLNMAGGLLDNNAEHQVSGQQLGESLIELAKEHKVVGEGDRIYLSYVY NAEVQIAEHLNRIIKNKDDGEDHFSDDAIKSQIRMVESKFDINYDDSQSQAIMEAVKSPA FILTGGPGTGKTTIINGIVNTYARLHEYSLDINEYKDKPFPIVLAAPTGRAAKHMSDSTG LPASTIHRLLGLNGQESADYTSPKDIEGSLLIIDEMSMVDTFLFRLLMRAVPNHMQIIFV GDQDQLPSVGPGQVFHDLLTSKQLPAMHLDNIYRQEKGSSIVQLAHDIHAGKLSENFDQN QSDRSFIACNETQLPSVIEQVARRAKDKDFGLMDVQVLAPMYRGTAGIDHLNNILQNVWQ VNPTGKSVTIRDHTYRIGDKVLQLVNNPEQNVFNGDLGIIVGMEAPKNQAIPTKIIIDFD ETEVTYEKNEWIQFTLAYCTSIHKAQGSEFPMVILPIVRQYSRMLQRNLLYTAVTRASDF LIMLGEKQAFEQCVRSISVNRKTSLVQRLVEAISEEPYQAVKNPSTDNLNDSVSIKNNHD EQQEAVASSEPRHLPDHLTGEMINDEQVDPMIGMDGITPYQFDKSNMS >gi|238617806|gb|GG669615.1| GENE 61 63469 - 63861 338 130 aa, chain + ## HITS:1 COG:lin0238 KEGG:ns NR:ns ## COG: lin0238 COG0462 # Protein_GI_number: 16799315 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Listeria innocua # 8 126 8 126 318 157 65.0 4e-39 MAELKSHPRVKLFSLNSNRPLAEAISRAVGVPLSDATVEKFSDDEIKISVNESIRGDEVY IIQSVSDPVNSNLMELLIMVDAVRRASAKSINVVIPYYGYSRADRKARSREPITAKLVAS FLEMDGVDGL >gi|238617806|gb|GG669615.1| GENE 62 63858 - 64427 372 189 aa, chain + ## HITS:1 COG:lin0238 KEGG:ns NR:ns ## COG: lin0238 COG0462 # Protein_GI_number: 16799315 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Listeria innocua # 1 187 131 317 318 182 53.0 4e-46 MTLDLHADQIQGFFNIPVDHLRANTLLADYFAKKHNDSNSVVVSPDHTGVSRARKFAELL DAPIAIIDNRSPEDATTVPESVIGNVKGKKAIIVDDMIDTAFKLTIAAETLKKAGATDVY AIATHAVFSGNAQQRLQDSEIEKVIVTDSINISKADQFEKLEVVSVGDLFGEAITLIHNQ QSVGKLFGR >gi|238617806|gb|GG669615.1| GENE 63 64453 - 65448 1090 331 aa, chain + ## HITS:1 COG:AGc2811 KEGG:ns NR:ns ## COG: AGc2811 COG0667 # Protein_GI_number: 15888849 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 10 331 2 318 331 346 49.0 3e-95 MYMYKANEGRYDHAVVRRAGDSGLQVPALSFGMWHSFGDDANYGDSEKVILKAFDEGIFS FDLAYNYGPTSGAAERMFGDVYRANLKSYRDELVITTKAGFNMWPGPYGNFSSKKTLVNA LDGSLKRMGLDYVDIYYSHRFDPNTNLEETANALDGIVRSGKALYIGISNYNSEQTKEIT QYFNDLHTPFVVNQASYNMLNREVEDDGLLKTLKDENKALIAYGPLAEGLLTDKYLGGMS DDVKVHWSNQFVIKHGKDELVKKLNELNDIAKNRGQNLAQMSLAWLLHDKTVASVVTGAS KVAHLEDNLKALDNLDFTDDELSQIDKIVKE >gi|238617806|gb|GG669615.1| GENE 64 65673 - 66683 726 336 aa, chain + ## HITS:1 COG:lin2102 KEGG:ns NR:ns ## COG: lin2102 COG1609 # Protein_GI_number: 16801168 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 6 335 4 334 336 238 37.0 1e-62 MTKKVTITDLAKRANVSVTTVSQILNGKDDRFSEKTVKKVHQLQKEMGYVPDFNAQSLIR RSGRTIGVLVPNINNPFFSHFLRGIESVAMDNGYIPLIFGSNNNQKLESYYLFESIRRAA DGMIIASAISDVSYIDNILNQNGIPYLLTDQAPVADGDQVDVNNYHGGELLANYLIQKGH QRVTVVTDQHPTLNLKQRLTGFLDVFRSHGLSIADEQIVETELTKLGGYHATKQALAHHP TAIFALNDEIAIGLYRGIHEAGLRIPDDISIVGYDDIDLTEYVTPTLTTIHQPSFEMGES AAKLILKRIQDRDRPFQSVSLPIELVERESVKNINS >gi|238617806|gb|GG669615.1| GENE 65 66923 - 67840 899 305 aa, chain + ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 1 301 1 302 304 244 46.0 1e-64 MTNKVVVLGSLNVDTTLHIAQMPKPGETISAQSKTNSAGGKGANQAVAAARSHAQTSFIG QVGEDSAGEFMINALKKDRINTDHINVTSNAGTGSAVILLDKEGQNSIMVYGGANQAMST DIIADSEAVIADADVLISQFETPQTVAYEAFKVAKKHGVMTILNPAPAADILDGLLEVTD LIVPNETESATLTGINVTDIDSMDQNAAKFASMGIQNLIITVGDRGAYYHTPDASGFVPA FKVKAKDTTAAGDTFIGAFSSKVLKDLSNIEMALTYAQQASSITVQRMGALPSIPTTEEI SAEYK >gi|238617806|gb|GG669615.1| GENE 66 68033 - 68251 289 72 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0727 NR:ns ## KEGG: Lbuc_0727 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 72 1 72 72 74 69.0 1e-12 MSNKLEILKDYQKAASKLNRLKSQEAEVCRSENGEDKDTVVIKPQFGNEMNHLNKECEQL NMILEAMDASED >gi|238617806|gb|GG669615.1| GENE 67 68339 - 69298 688 319 aa, chain - ## HITS:1 COG:CAC0339 KEGG:ns NR:ns ## COG: CAC0339 COG1397 # Protein_GI_number: 15893631 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ADP-ribosylglycohydrolase # Organism: Clostridium acetobutylicum # 17 306 35 318 341 203 35.0 3e-52 MYSTSYLLFQSLTAVALGDALGVPVQFEEREKLLESPVDTMLGHRAFDVPKGTWSDDTSL SIASLVSLSLGFNLNDLMTRYSQWYHFGDYTPFGTSFDIGKTTKAAIKRFDKGITPELCG GNDEMDNGNGALMRMMPLAFFILTDYRHYQFDDQVASLVHRFTATTHRHPRSLVASGILI NVIIRVIQNPNKYAMLRAIQEALDYYKGKTQFKDQVPYFEQLGDSGFLRQPSTQIKSSAY VVDTLNSVFWCLFNSEQYFVAVKRAVNLGHDADTIGSITSMLASLLYAPVTFPPNWLKDL KGRGQIKIAVSFALLSNYF >gi|238617806|gb|GG669615.1| GENE 68 69485 - 70462 484 325 aa, chain - ## HITS:1 COG:BH1953 KEGG:ns NR:ns ## COG: BH1953 COG1597 # Protein_GI_number: 15614516 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Bacillus halodurans # 3 295 2 266 295 140 33.0 2e-33 MEYFIIVNPTAGGNNGRKVWPQIEQYLKKKNISYRAYFTEYDGHAVSIAMRILDQITATN HPDAIIIATGGDGTLHETILGCMRFYAEHPQIKDPRVPVGLLPIGSGNDFARALKIPRHW KKALHDIFECQVPTKIHIGHFINHDLSTDGYFLNNFGIGLDATVVYLANHSLLKHHKQFS GFSYWVSVLHAIQTVQPFELTVTHPNGTIHTYSKAFLVTVTNHPYFGGGIDIVPRASVYK DQLDLVIVEKPTYRQILLFIFMLLLKRHLHLRFVHHFSETHFELKTKKARYGQIDGEELG HKTYNASYETKDYPFWIKKTDNSQL >gi|238617806|gb|GG669615.1| GENE 69 70595 - 72280 1377 561 aa, chain - ## HITS:1 COG:lin1026 KEGG:ns NR:ns ## COG: lin1026 COG0595 # Protein_GI_number: 16800095 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Listeria innocua # 6 556 4 553 555 774 67.0 0 MKKLNVKNNEAAIYGVGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDDLLGVDYVIPDYK YLVDNKDKIKALVITHGHEDHIGGVPYLMKVLNVPIYAGPLAMALIKNKLEEHGLLNSVE LHEISDKSVIKFRKTKVSFFRTTHSIPDTLGVAVHTPVGVIVETGDYKFDLTPVTNQPPD LQEMAKLGAEGVLCLMSDSTNAEKPVWTKSEKWVGISISHIFDQVKDRIIFATFASNISR IKTACDNALARGRKIAVFGRSMDAAIVNGRELGYLDIPDDAFVDANQLQSLPANKTMILC TGSQGEPMAALSRIANGTHRQISIQPGDTVIFSSNPIPGNTTSVNDVINKLEEAGANVIH GKVNNIHTSGHGGQEEQKLMLRLMKPKFFMPIHGEYRMLKIHTELAEQCGVPLDHSFIMQ NGDVLALSKDTARLAGHFQAGDVYIDGSGIGDIGSIVLRDRQLLSEEGIVVVVATINLHN QEIQSGPDILSRGFVYMRESGELLDEGRRRVFKTIRKAMHNKKATEASIRNAVIDDLQEF LYDKTERHPMILPMLIMNGNH >gi|238617806|gb|GG669615.1| GENE 70 72277 - 72498 242 73 aa, chain - ## HITS:1 COG:SPy1875 KEGG:ns NR:ns ## COG: SPy1875 COG5503 # Protein_GI_number: 15675694 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Streptococcus pyogenes M1 GAS # 1 70 1 76 76 64 52.0 4e-11 MIFKVLYQPDKKQTPRRETTLSLYLEADTEVEARGLVEDNTDYAIEFVEPLQGEHLKYEQ DSSNFKLTEFNNK >gi|238617806|gb|GG669615.1| GENE 71 72700 - 73179 284 159 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0732 NR:ns ## KEGG: Lbuc_0732 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 9 159 12 164 164 184 56.0 1e-45 MLIIQIVIGLVAAFAVYNLIHYLFVTRPSRKRLLSAQRTVNKAVAEVLKALISADKLAPI KEEELHSEMIANIWGRGVMAFEYHIPIDRVKGSIPDLKELLTKGLDEYSQKNGIHAHGKK SSVFVVTDIWQLDDRLHFDVAYLINLTTIEYIDDLNRLH >gi|238617806|gb|GG669615.1| GENE 72 73469 - 73696 63 75 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLKITYKKYTNIVIHNNIINFTFSSGQALKDCTRIKMIDVSLFTVQTTDLVNEYLVIISF KGIVFVDVIIKQNAV >gi|238617806|gb|GG669615.1| GENE 73 73616 - 74173 493 185 aa, chain - ## HITS:1 COG:lin1043 KEGG:ns NR:ns ## COG: lin1043 COG0242 # Protein_GI_number: 16800112 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Listeria innocua # 1 174 4 172 183 192 56.0 4e-49 MDDIVRDGDPVLRQEAKKVKFPLSADDKKLAHDLMEYLEVSQNPELCEKYKLRAGVGLAA PQVGVSKMMASVLVPNDDENEKGKPLFKDVIINPVIVSNSVQRGALTEGEGCLSVDRDVP GYVPRSARITLKYQDVDGNEHKIRLKNYPAIVCQHEIDHLHGILFYDHINKDNPFKRDDD EVFIY >gi|238617806|gb|GG669615.1| GENE 74 74560 - 75681 1176 373 aa, chain + ## HITS:1 COG:lin1044 KEGG:ns NR:ns ## COG: lin1044 COG1071 # Protein_GI_number: 16800113 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Listeria innocua # 1 373 1 371 371 385 51.0 1e-107 MAAKSKHVVDFENIKSTMSDPYKKPVQVIDETGKIVNQELFDRFSDDELVTLMEKMVWER ALHEQTMNFSRQGRLGFYAPTLGEEASEMGIAHAMKKQDYLFPAYRDLPQLIQHGATVKE GFLWSKGHYQCYDYVRRGVRAWIPQIIIGAQYVQCAGAALGIKKNDEKDTVAYVFTGDGG TSQGDFYEGINFASSFQAPAVFFVQNNGWAISVPRKTQTAAETLAQKGVASGVPGVQVDG MDILATYLVAKDARDFAAAGNGPALVETLTYRFGAHSSAGDDPSRYRTKEEEKPWFDRDP LIRLRKVLTDKKLWDQDKEDKLVAQYKDQFKQDMKDAEAAPKQKVSDFLKHTFEVPTPDV AAQIKEFEAKESK >gi|238617806|gb|GG669615.1| GENE 75 75684 - 76661 907 325 aa, chain + ## HITS:1 COG:lin1045 KEGG:ns NR:ns ## COG: lin1045 COG0022 # Protein_GI_number: 16800114 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Listeria innocua # 1 325 1 325 325 399 59.0 1e-111 MAKLTYIKAITDGLDQVLQDDPKTLIFGEDVGKNGGVFRTTVGLQDKYGTDRVFDTPLAE SGILGLSIGLALTGWRPIPEIQFMGFTMEAVDSIGGQMSRNRFRMSGDVSMPITIRTPFG GGTHTAELHGDSLENLFVGIPGLRVVTPANPYDAKGMVISAVENNDPVLFMENLKLYRSM KDEVPDGHYTVPLDKAKVAREGSDITIVAYSAEVNEALKVADKLEKENISVEVIDLRSLS PIDTETIFNSIDKTHKVVVAQEAQKMAGVGAQVASAIAEDDIMSLDAPIGRVSAPDSVFP FAMAENDWLPNADDIEAKVREILNY >gi|238617806|gb|GG669615.1| GENE 76 76692 - 78011 1289 439 aa, chain + ## HITS:1 COG:lin1046 KEGG:ns NR:ns ## COG: lin1046 COG0508 # Protein_GI_number: 16800115 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Listeria innocua # 3 438 113 543 544 389 52.0 1e-108 MAYKFKLPELGEGMAEGEIASWLVKPGDKVKEDDPLVEIQNDKSVQELPSPVAGTVKSID KNEGDTAEVGDVLITIDDGSPDTPDDAAPAPAKEEAAPAPEPAKEAAPAPAAAPAAAAPA PAGNPTPSDPNKLVKAMPSVRQYARDKGVDITAVPATGNHGQVVKADIDSFNPAAAPAAQ APAAEAAAPKAAGGPIKPYKSAQPDLETREPMSMMRKIIAKSMRESKDIAPHVTSFDDVE VSALMANRKRYKEIAKDRDIHLTFLPYIVKALVAVMKQYPEFNASIDDTTQEIVYKHYFN VGIATNTDDGLYVPNIKNADAKGMFEIAKEITENTQAAYDNKLSADKMSGGSITISNVGS IGGGWFTPVINQPEVAILGVGKIAKEPYVDPEDGEIKVGNMLKLSLSYDHRLIDGALAQN ALNLMNKLLHDPDMLLMEG >gi|238617806|gb|GG669615.1| GENE 77 78019 - 79443 767 474 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 4 474 1 458 458 300 35 3e-80 MAEVEKKETVIIGAGPGGYVAAIRASELGQKVTLIEKSDTLGGVCLNVGCVPSKALIQAG HRFQEANDASTYGITTQPATIDFKKTQDWKQKKVVDRMTSGVKMLLKKHKVDVIQGEAVL DSDTQLRVMPVGPQQFMSADTGLTIQFDNLIIASGSHPIEIPGFKFDGRVVDSTGGLNLP EIPKEFVVIGGGYVGTELAGAYANMGSHVTIIEGTPSILAGFSKDMVSIVQKSLKKKGVD IITSATAKSSSQDANSVSVTYEADGKESTIKADYCMVTVGRKPNTDDLGLEYTKVKLDDR GIVQTDDQGRTDSPHIFAIGDIASGPALAHKAFFQGKVAAGAISGKNTANDYVGVPGVCF TDPEMAVVGLTQSQAKDKDIDVSTAKFPFAGNARAVSLDEAEGFVRLIYTKDDKTILGGE VVGPGASDLIAELSLAVNGRMNVEDIALTIHPHPTLSEPIQEAADVALGFPTHI >gi|238617806|gb|GG669615.1| GENE 78 79672 - 79956 239 94 aa, chain + ## HITS:1 COG:SP1404 KEGG:ns NR:ns ## COG: SP1404 COG4476 # Protein_GI_number: 15901258 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 84 1 82 92 61 39.0 4e-10 MNDDYSYPLIDGLSNDEVIILVTFFQKVEEAYEKQSGVDRESFMNAYQDFVTVVPSKMEQ KQLEKQFQERSGYNAYQVIRQSKQDVKTLKMNEA >gi|238617806|gb|GG669615.1| GENE 79 79958 - 80737 646 259 aa, chain + ## HITS:1 COG:BS_yktC KEGG:ns NR:ns ## COG: BS_yktC COG0483 # Protein_GI_number: 16078531 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Bacillus subtilis # 8 254 6 257 265 185 37.0 8e-47 MEINELEEIDKTVKGWLRESRDNVLRNIDTRLTVSTKTSRRDLVTNIDKQNEKFIVSKIR EFEPHARILGEEGFGDKVDSTKGRVWIVDPIDGTMNFVKQRNHFAIMIALYNDGIGELGY ILDVIGNRLLSGGPKIGVFDNGQPLTPVADTALKDGLIGLSGPMVLNNEFNMVDIAEKSL GMRIYGSAGIDIISVLRGELVGYISYLKPWDFGAGKILCESAGLKMTTIDGKQLGMLSST AVLLATRNAHRDVLTIVGK >gi|238617806|gb|GG669615.1| GENE 80 80843 - 82690 1595 615 aa, chain + ## HITS:1 COG:SP0681 KEGG:ns NR:ns ## COG: SP0681 COG1217 # Protein_GI_number: 15900582 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Streptococcus pneumoniae TIGR4 # 6 615 3 612 613 856 71.0 0 MDTKLKTRDDIRNIAIIAHVDHGKTTLVNEMLKQSDTLAAHTQIEDRALDSNAIERERGI TILSKNTAVKYGDKQINILDTPGHADFGGEVERIMRMVDGVLLVVDAFEGTMPQTRFVLK KALEQHLTPIVVINKVDREGARPEEVVDEVLDLFIELGADEEQLDFPVIYVSAMNGTSSY DSDISTQEHTMKPVFDTIINRIPAPIDNSDEPLQFQVALLDYNDFVGRIGIGRIFRGKIK VGDNVTVMKLDGSKKNFRVTKLMGFIGLKKVDINEAKAGDLIAVSGMEEINVGETVVSPS TPEALPILRIDAPTLQMTFGTNTSPFSGQDGKFVTARQLGDRLKRELHTDVSLRVEDTDQ PGSWVVSGRGELHLSILIETLRREGYELQASRPEVIYREIDGQMSEPFESVQIDTPDEYT GSIIDTLSQRKAEMQNMETTDNGQTRLTFLAPSRGLIGYSTEFLSLTRGYGIMNHTFEKY LPVIKGWNPGRKKGTLVSMNSGKATTYAMMGIESRGELLIDPGTEVYEGMIVGQNNREND ITVNITKGKNLTNVRAAGSDDMARIKTPTHLTLEESLEFLNEDELCEVTPNFIRLRKKIL NTNTREKEAKRRKHS >gi|238617806|gb|GG669615.1| GENE 81 82911 - 84089 752 392 aa, chain + ## HITS:1 COG:lin1059 KEGG:ns NR:ns ## COG: lin1059 COG0772 # Protein_GI_number: 16800128 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Listeria innocua # 1 384 1 382 400 243 38.0 3e-64 MAKVRLRHLDLFIFLPYIILCVLGIIMVYSASANIGIQNGGSPKSYLIKQIIFVVISLVL VFGTTAFNLKKIRNKKFLRWLGYCFILVLIGLLAVGQTVNGAAGWIHIGGINIQPAEFAK FYLIILVADAVDRDENELTISTSHWWQALRHPLLIVAVMLILIFFQPDVGGAAINFAIVF IMLIASGFSWKRGVTYLVGFGIAAYAFMMVVLVPLSESGKIQSYQLSRITAFVNPFKHAT GVGQQLVNSFYAISNGGLFGSGLGNSIQKTGYLPEPNTDFIMAILTEELGALATVAVMAI LALIIFRTVLIGIRCNSTYQSLICYGVAAYLTVQALFNMGGVVGLLPITGVTFPFISYGG SSMMTLSLCIGIVLNISGRQRLERSDYQAATN >gi|238617806|gb|GG669615.1| GENE 82 84111 - 84398 192 95 aa, chain + ## HITS:1 COG:BS_ylbG KEGG:ns NR:ns ## COG: BS_ylbG COG4471 # Protein_GI_number: 16078564 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 10 93 7 86 90 59 40.0 2e-09 MPFEIQPTIGLIIYLHSLKYVRNLRNYGRLYYVSKRMRYAIIYVEMDDKEETIAKLKTLN YVKQVVPSKLNELVKEVQGKDPTALDKQFDEDFDD >gi|238617806|gb|GG669615.1| GENE 83 84414 - 84977 436 187 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 185 13 197 199 172 46 7e-42 MRIVSGKFGGIRLNPVKSDKTRPTTDKVKESLFNITGPYFDSGSFLDLFAGSGAVGIEAV SRGMDKAVLVDRQFQAIKAIKENISKVHAEGQFEVIKGSAEKVMVSLSKKGEQFNMVYLD PPYKQQKLIETLVALSDFNLLINDAVVICETDNHTELPDVLDGFKVMKQKNYGLTSLKIY TYQMEKK >gi|238617806|gb|GG669615.1| GENE 84 84980 - 85453 305 157 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 8 157 10 159 164 122 39 1e-26 MVDALYAGSFDPITFGHVDVIQRASNIFDKVFVAISINTHKHALFTPEERADFVKQIFAD NERVNVLVSEELTVHLAKRLGTSVLVRGVRGSADLDSEMSIAGLNSGLAPDIQTVFLPTA GQYRDLSSSMIKEIAKFHGEVSAFVPPVVSEALKNKF >gi|238617806|gb|GG669615.1| GENE 85 85472 - 86509 382 345 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 [Bacillus selenitireducens MLS10] # 13 345 16 346 350 151 27 1e-35 MKKKGIKKYVLGVIATIIVLAVIFWPLPNYIEGPGGASDLSQIVSIKNHPDKRKGMFMLT SVSIAQARPLTYLYAKISPYYSVESDDSVTDGQNMKEYDKVQHFYMESSIGEAIYTAYKH AHQQVKRTYNGIYILDIEKNSKFYHQLQVGDIVVKIDGHQFKNSDGFVNYVRKQKVGQKL TIEYRRGQKMHKVTKPLIKIANHQPGIGITLTDDVKVHTGVPIKVDPGQVGGPSGGLMFS LQIYSQLTNQDLRHGKKVAGTGTIDSYGNVGEIGGIDKKIIAAKKNGAKIFLAPYIKPTK TILKYEPGHQTNYQLAKQTAQKYAPKMKVIPVKTFDQAVSALQKQ >gi|238617806|gb|GG669615.1| GENE 86 86580 - 87323 478 247 aa, chain + ## HITS:1 COG:L0316 KEGG:ns NR:ns ## COG: L0316 COG1555 # Protein_GI_number: 15673755 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Lactococcus lactis # 75 246 63 213 215 124 41.0 1e-28 MNRIREFIDEYLYQVLISAAVIIIILVVIVFSLVLGHSSKPQVQGMVSTTSVNEASTTSQ SKGSDPIDTASSVPQSSSQQLYVDVKGAVKNPGVYQVGANMRVVDAIDLAGGFNRSADKK QVNLAQKLTDQQIVYIPIKGEIKGNRSLGATPSQSPSAETSSTNPQTAATSNAESSSGSS TEGTEKINLNTADKSKLQELNGIGDKKADQIIAYRQAHGQFKSIEELKDVPGFGDKTFDN LKSTICV >gi|238617806|gb|GG669615.1| GENE 87 87357 - 87848 391 163 aa, chain + ## HITS:1 COG:lin1518 KEGG:ns NR:ns ## COG: lin1518 COG2131 # Protein_GI_number: 16800586 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Listeria innocua # 9 150 3 144 186 208 66.0 3e-54 MEGEKMDNRIKWDQYFMMQAVLLASRSTCERLSVGAVIVRDKRIIAGGYNGSVAGDDHCI DVGCYLVDGHCVRTIHAEMNAILQCAKFGESTDNAEIYVTDFPCLQCTKMLLQAGIKRIN YLRNYHNDEYAQKLIRLKNVELNKIKLTHSDMDRVPFNSYLSD >gi|238617806|gb|GG669615.1| GENE 88 87950 - 90103 608 717 aa, chain + ## HITS:1 COG:L0317_2 KEGG:ns NR:ns ## COG: L0317_2 COG2333 # Protein_GI_number: 15673754 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Lactococcus lactis # 428 700 1 273 282 231 40.0 4e-60 MIRLCLLKSVKYTTLTVALSVVFLFWVGLTTSHEIAITDKNVQETIKVYPDMINVDGDRF RTVAKSPTIARKVIYYARFESLSQKRAIINSSKPLLLSIKGERRMISPATNMNQFDMRDY YQHQKIYETFSIGTITTIHPVNKLSLIDIIHMVRFQFDRYCDGLPKTLRIYSMGLISGNR ENDFFTEMTGAQQLGLLHIFSISGMHVYYFLTILDQVLTLLGIGDRFKAIVKLCCLGGYF IFSGGSPGLLRAVVMAGIVIVSQLLGFKMSQLSALSLTLIVNLFLLPEAMFMMSVQLSYG LAFGLIASSKMTYLRQTVLLNLLSLPILLFHLYEWHVLSLAVNLMVLPLFGRTIFPLVIF GLLFGLVSSKLAIPVEWVLMAFNRSLNMVGRLPGMIVFGKPQLVVVLLMLGLTLIVMIHS KKRVRGYKVILAGLYLVTFIWIHFPIHGEVSMFDVGQGDSFLIRTPFNQSVTIIDTGGKV TFNQQQWRRVTENYQANRISINYLKSIGISRIDNICISHQDADHCGDLPAFIKELKIKRI IIPLGMDQNPGFVKRLSGKDPATVVMPVNDEFRVGGLPLIIFHPYQPGKGENHDSEVLGG RFGGLNWLFTGDLDRQGEMDTLQRHPSLRTDVIKVGHHGSRTSSDPAFISQIQPKIALIS AGRHNRYHHPNEETLTTLKREHIRVLNTQKSGMVRYVYRNNNGFFESMLGHNEGKNE >gi|238617806|gb|GG669615.1| GENE 89 90100 - 91128 704 342 aa, chain + ## HITS:1 COG:BS_yqeN KEGG:ns NR:ns ## COG: BS_yqeN COG1466 # Protein_GI_number: 16079610 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Bacillus subtilis # 10 323 9 323 347 213 37.0 4e-55 MNFSQLMTQLKQHKQDAVYLILGDQSYLSDQIKQAFTSLIPDEQRAMNIGVYDMEETPVS SAVEDAISVPFFGEQRLVMINRPYFLTGLRVKSKVEHHVDDFLEYLKHPESSTIMVIFAP YDKLDSRKKITKSLKKVATTVEIGKLRESEIKSTVKQRIAAEGYTIDEDALERMMQLTAG QLTSMMNDLPKLFLYNKDGKQITLSSVNGLVSPSIEQSVFDLVNSVLKKNAKESMDIYRN LVLENEAPIGINAVLIQQFRLLLQVMILQKHGYSQGNLAASLKVHPYRVKLALQTIRHFD YKQLRDAYLGLVETEREMKSSNRSPELLFELFLLKFMRPDVA >gi|238617806|gb|GG669615.1| GENE 90 91272 - 91526 404 84 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227509440|ref|ZP_03939489.1| ribosomal protein S20 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 84 1 84 84 160 100 4e-38 MPIIKSAIERVKTNEKAQKRNAAQLSTYRTAVKRFEKAQLSGSDDVKDLYINAISAIDHA KSKGLIKANKAARDKSRLTARLSK >gi|238617806|gb|GG669615.1| GENE 91 91767 - 92036 453 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227509441|ref|ZP_03939490.1| ribosomal protein S15 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 89 1 89 89 179 100 7e-44 MAVTQSEKDALIKKYARHDGDTGSAEVQIAVLTADINEINIHMKNHRKDYHSQRGLMKKI GHRRNLLAYLRNKDVTRYRELIKSLGLRR >gi|238617806|gb|GG669615.1| GENE 92 92223 - 93959 1657 578 aa, chain + ## HITS:1 COG:SPy1020 KEGG:ns NR:ns ## COG: SPy1020 COG0595 # Protein_GI_number: 15675021 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pyogenes M1 GAS # 4 554 3 552 553 573 52.0 1e-163 MKNDIKIMAIGGVRENGKNMYAIDINGGIYILDCGLKYPENELLGIDVVIPDFSYLEENK DRIVGVFLTHGHADAIGAISYFLSEFDVPVFGSEMTVELAKLNVADSEELSGFDDFHIVS ERSEIDFDDVKVTFFKTTHSIPGSLGIALHTSDGAIVYTGDFKFDQTAAPMYQTNYSALT RLGDEGVLALLSDSGNAENPAPSASEKKIGEYITETFHYHDSRIIVASVASNILRMQQVF NAAAETGRRVFLTGHDLERIVKTALRLHNLKLPVDDLLIDSVKDVDKMNPDKVVIIQTGK MGEPIKAIQRMANKEQGDINIEPNDLVFITTTPSTAMETTVAKTRDMVYRADGEVEMISD QMNSSGDASQTDLQLIMNLLKPKFLIPVSGEYRLLESHAQLAKQIGFTDDRIFIPDKGDI VSVNKDEMWISGSAPISDTMIDGIGIGDIGNIVLRDRKVLSEDGIFVAVVTIDRKKKRIV SQPKLTSRGFVYVKANKDLMKEAAGIIEKTVRNNLDHKEFDWSNLKQDVRETLSDYLYKQ TKRRPVILPVIMEVNQHHKRTNKKHSKNAAKSTAKEEN >gi|238617806|gb|GG669615.1| GENE 93 94074 - 95003 619 309 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0757 NR:ns ## KEGG: Lbuc_0757 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 303 1 303 309 271 45.0 4e-71 MNKFSKNDQVIFWSAEEDLDDQKFHQVLNKTEHLEAKYPDDLRIHLLMAQALFALHESAD AYRIIFDYREQLFEVPKYLPAVFHIVLENNGFMFAREFLPNVSSTQRLKWLAKIENAEEK YREKDRNDLNNKMKNLAHLGSLDAYKQVHGINDALKMPLKEYLTAAKLLLSDPFGWQVSK TQVLLELNAVGSGETIDLTWIDKNSYHLPLNELKPLTAYHVLIDALREIDKQYGADDPIK FQLLEKELFTQSSYIYPFFDKVIQDSKFWVKIIVADLFGDHLEANTPAQREMLGWIKQIH QAESFIKFV >gi|238617806|gb|GG669615.1| GENE 94 95186 - 96373 1365 395 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 393 1 405 407 530 64 1e-149 MAKEHYERTKPHVNIGTIGHIDHGKTTLTAAITKVLASKGLAKAEDYADIDAAPEERERG ITINTAHVEYETEKRHYAHIDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHI LLAHQVGVDYIVVFLNKTDLVDDDELIDLVEMEVRELLSEYDYPGDDIPVVRGSALKALE GDKEQEQVILDLMDIVDEYIPTPERDDSKPFLMPVEDVFTITGRGTVASGRIDRGVVKIG DEVEIVGLNDAPLKSTVTGLEMFRKTLDEGQAGDNVGVLLRGIDRDQVVRGQVLAAPGSI QTHKKFEGQVYILTKEEGGRHTPFFSNYRPQFYFHTTDVTGVIELEKGVEMVMPGDNVTF NVELTKPVAIEKGTKFTIREGGHTVGAGIVSDVKD >gi|238617806|gb|GG669615.1| GENE 95 96556 - 97893 1352 445 aa, chain + ## HITS:1 COG:SPy1896 KEGG:ns NR:ns ## COG: SPy1896 COG0544 # Protein_GI_number: 15675709 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Streptococcus pyogenes M1 GAS # 1 424 1 424 427 407 55.0 1e-113 MSAKWEKKGTNDGELTFEIGTDSIKSGLDRAFKKNKNSIRVPGFRKGKVPRAIFNQMYGE EALYEDALNILLPDEYSKAVDEAKIEPVDQPKIDVESMEKGKPWVIKANVTVKPEVKLGN YQGLSVPKQNTRVYQKDIDAELEKKRQNEAELVLKEGKAAEKGDTVVIDFDGTVDGKPFD GGSAKNHSLELGSNSFIPGFEDQLVGHKAGDEVDVKVTFPDDYQAKDLQGKDAIFKTTIH EVKTKELPKLDDDFAKDVDEDVDSLDELKEKIKDDLKTQKKNEAREAIEDAAINQAVDNS EVKDIPQAMLDEDIQRQMDQYLAGMQQQGINQQMYFQLTGTKPEDLKKQFSDGAERRVKT NLVLEAIVDAEKINPTEDDLKAEVKDLASQYGMKEDAVRSALTDDMLKHDIGIKKAIDLI VDSSKQDAKAKEEKSDTDKKDSSEK >gi|238617806|gb|GG669615.1| GENE 96 98095 - 99342 281 415 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 157 401 258 448 466 112 33 7e-24 MFEDNESNGPITCSFCGKTQDQVKKIVAGPGVYICNECIDLCKEIIDEELAPEKTSEDLL KVLTPAQILDKLNEFVIGQGNAKRTLAVAVYNHYKRVNEMISDPNDDLELQKSNICVIGP TGSGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVDKAEKGI IYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQIDT TNILFIVGGAFDGIEGIVKSRLGDKTIGFGTDSDEAKYVNSKNIMQSVIPEDMLKFGLIP EFIGRLPILTALDKLDEHDLVRILTEPKNALVKQYQKLIELDGAELEFQPAALQKMAQLA ISRNTGARGLRSIIEDVMRDIMFDLPSRNDVSKVIITPETVTNHTEPQLVLKKAS >gi|238617806|gb|GG669615.1| GENE 97 99445 - 100032 396 195 aa, chain + ## HITS:1 COG:lin1593 KEGG:ns NR:ns ## COG: lin1593 COG0218 # Protein_GI_number: 16800661 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Listeria innocua # 1 193 1 193 194 239 61.0 2e-63 MDVQNVDLTISAVEAKQYPNTRFPEIAFVGRSNVGKSSLTNVLINRKGYARTSSQPGKTQ TLNFYNIEDKLFFVDVPGYGYAKTSKANREKWGKMIEKYLTEREQLRGVITLVDGRHAPT NDDVSMHEWLKYYGIEILTVATKMDKIAKGKWNKQESLIRKTLNLDANEKLISFSALTKQ GKTEIWQWIEGRMHQ >gi|238617806|gb|GG669615.1| GENE 98 100029 - 100340 324 103 aa, chain + ## HITS:1 COG:lin2253 KEGG:ns NR:ns ## COG: lin2253 COG1694 # Protein_GI_number: 16801317 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Listeria innocua # 1 92 1 92 105 119 61.0 1e-27 MNFDDYQMAANRTLMGKEQVLTNCVLGLTGESGEVADLVRKYTFQSTKLDKGQLTKELGD VLWYLSQIAEWADIPFDQIASENIKRLKQRYPSSKGGLNQVNL >gi|238617806|gb|GG669615.1| GENE 99 100641 - 101936 1288 431 aa, chain + ## HITS:1 COG:L126739 KEGG:ns NR:ns ## COG: L126739 COG0137 # Protein_GI_number: 15672106 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate synthase # Organism: Lactococcus lactis # 1 398 1 398 398 553 64.0 1e-157 MTENKKVILAYSGGLDTSVAIPWLNDKGYDVVACCINVGEGKDLNFIKQKALNVGAVEAY VIDALDDFADHYASVALKANAMYEGAYPLISALSRPLISKALVDLAHQEHAQAVAHGCTG KGNDQVRFEVAIHSLDPQLEVLSPVRDWHWSREQEIEYAKKHNIPIPIDLDSPYSIDANI WGRANEAGVLEDPWHSAPEDAFAITNALEDTPDKPAVVDLTFVKGLPTELNGQPMKFSEI IQQLNTIAGEHGIGRIDHIENRLVGIKSREVYEAPAATVLLKAHKELEDLTFERDLAHFK PTVEKQLSELVYNALWFSPLMDALNAFIDKSQEVVSGVIKAQLFKGNVTILGRKSGSSLY DKDLATYTASDSFDQEAAKGFIKLWGLPTQVYSQVQLKNKQSQFVKAVTESHAEDKVTIQ GNYSSQMGAKK >gi|238617806|gb|GG669615.1| GENE 100 101936 - 103321 1232 461 aa, chain + ## HITS:1 COG:lin2196 KEGG:ns NR:ns ## COG: lin2196 COG0165 # Protein_GI_number: 16801261 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Listeria innocua # 4 458 2 456 456 583 63.0 1e-166 MSTKKLWGGRFQEQASKWVDEFGASISFDQQMADEDIEGSLAHVKMLTYTKILNSKDVDQ IVAGLEELRQELHEGKLTFTVENEDIHMNIEALLTEKIGPVAGKLHTARSRNDQVATDFH LYVKNRLPRIIDEITTLQKTLVSMAAQNVETIMPGYTHLQHAQPISYGHYLMAYYQMLKR DKERFEFNMKHTDMMPLGAAALAGTTFPIDREYTAKELGFGQVYANSLDAVSDRDFALEF LSNSSILMLHLSRFCEEISMWVSHEFKYLELSDAYTTGSSIMPQKKNPDMAELIRGKSGR VYGHLMGLLATMKSLPLAYNKDLQEDKEGVFDTVKTLLPSLKVFNGMLKTAKPNVERMKH ATENDFSNATELADYLAAKGVPFREAHGIVGQLVLKGLQTHKNLQDMSLEELKEASPKIE ADVYHDLKSEVAVERRHSLGGTGFDQVRIQIKNAKQELSDS >gi|238617806|gb|GG669615.1| GENE 101 103495 - 103653 174 52 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MALKINRQDDLDAIFGKFAEMNLDDDKRDKFLKHKKNDKDKKQKNEKRPEKK >gi|238617806|gb|GG669615.1| GENE 102 103852 - 105318 1284 488 aa, chain + ## HITS:1 COG:lin2352_2 KEGG:ns NR:ns ## COG: lin2352_2 COG0765 # Protein_GI_number: 16801415 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 282 485 8 212 215 211 50.0 2e-54 MKKLKAIIQMMLVFVTLLTVSAIQTNSASAADNSLQRVKQRGELIMVTSPDYPPYEFQVN KGGKSRIVGMDIDVAKKVAKDLGVKLVIKSMNFDSLLVAIQTGKADMAIGGINPTNERRQ SVDFSDIYYSGGQSFLINSKDVNKYKSVKNLRGGKIGAQTGTLQYGLAKKRIPGATVKGM DKSTDLVLALKTNKIDALGIEKPSAEAYVKNDPSLKMIPSGYHLNKNDIGAAIAFKKGST SLVNAVNKSIVQIKKKHLTDKYLASAGKYMKVNTVNTSMFHYWKYFASGVEYTILISLVS TFFGVLIGVVLALMRFSRQRWLRGLAISYTEFIRGTPLMVQVMFVYFGIGVIINIPALIS GMIAVSLNSGAYVAEIIRGGINSVGKGQTEAAESLGLTKGDMMRYVILPQAFKNIWPALG NEFISLIKESSIVSIIGVTDLIYQLNIVRADTYRGVMPIFVAMVLYFLMTFLLTRLLNHY EGKMKHAG >gi|238617806|gb|GG669615.1| GENE 103 105308 - 106057 582 249 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 6 245 1 242 245 228 46 8e-59 MQDKAVIEVNHLNKKFGENTILKDINGTVKSGQVICVIGPSGAGKSTFLRCLNLLEKPTS GEVKFDGTDLTHVDGKQLLDLRERMGMVFQSFNLFPNMTVLKNLMLAPMRVKHMTEDEAK KTAMHLLDRVGLQSKAEAYPSSLSGGQQQRVAIARALAMNPEVMLFDEPTSALDPEMVGE VLEVMQELANEGMTMVVVTHEMGFAKSVANQVWFMADGYILEKSSPSEMFDNPQNERAKD FIGKIIEAK >gi|238617806|gb|GG669615.1| GENE 104 106356 - 108125 1214 589 aa, chain + ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 1 578 22 598 603 601 52.0 1e-171 MKDINGKIIYVGKAKNLKNRVRSYFKSSHEGKTARLVSEIADFETIITSTDKEAFLLEIT LIQKHRPYFNIKLKQGHSGYPYIKITNERDPQIKIVNTLLKDGAYYFGPYPNVYAAEETV NFLQKVYPLRRCNGFQNRPCLYYHMGQCLGACFKVVPEEVYDRQIKRIKSFLNGNVGHAK QMLAKRMEDASANMAYERAAEIRDLIKYIEITVEKQKIISHDNTPRDIFNYYMNKGWLSI QVFFIRQSRLMKREKRLFPIITDPEEEMVSFISQFYKQKNQILPKEILVPSSLPSDVVSS VVDDVPVRTPKRGQKRDLLEMAGKNAQLVLEEKFRLLELDESKTTGAMKELTDAMGIPEG HKVEAFDHSHIQGADLVSAMVVFVDGQPNKNLYRKYKLKTVDHADEAASTREVIRRRYTR LLKEHAQMPDLILMDGGTIQMNAVKDVLVNELGLDIPVGGMVKNEHHQTADLLFGDSDTP LHLDPKSQGFYLLQRIQDEVHRFAITYHRKVHAKNSLGSRLDSIAGVGPKTRNKLLRKFG SLKKISEAPVDDLKALGISETVAQTIKFSLSKIDAERKVVNYQDKKLIN >gi|238617806|gb|GG669615.1| GENE 105 108253 - 109563 965 436 aa, chain + ## HITS:1 COG:SPy1333 KEGG:ns NR:ns ## COG: SPy1333 COG0536 # Protein_GI_number: 15675273 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pyogenes M1 GAS # 1 435 3 436 437 473 60.0 1e-133 MFVDQVKIDVQAGNGGNGIVAFRREKFVPNGGPAGGDGGRGGSIIFKVDSGMNTLMDFRY HRKFKAKNGGDGGNKSMTGKSADNLIVPVPEGTTVTDTTTGEVIGDLLKPDQELTVAKGG RGGRGNIHFASATNPAPEIAENGEPGQTVSLSLELRVLADVGLVGFPSAGKSTLLSVITS AKPKIAGYHFTTLVPNLGMVRLDDGRDFAVADLPGLVEGASKGVGLGFQFLRHVERTRVI LHLVDMSGVEGRDPYDDYLVINKELVEYDPDILKRPQIVVATKMDLPNAKDNLQIFKDKL TSGHSVDTELPEVLAISSVTHAGLSELINKTAALLDQTRLQAQEQPETESNTKEYDFDKT DSPAFKISFDKEIDSWVISGDKIEKLFKMTDTEHDQSMLRFARQMRGMGIDSALEKAGAK DGDTVTILDFSFTYVA >gi|238617806|gb|GG669615.1| GENE 106 109595 - 111532 1320 645 aa, chain + ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 17 639 3 602 605 380 38.0 1e-105 MQQVRSQQTGKRLKKSRYITGFDGIRALAVVGVIVYHLLPYNLQGGYLGVPTFFVVSGYL ITDLLLQEWEQNGKIDFWGFYSRRLKRLYPALVFMLVGTGTYITLFERSLLTNLRSIITT NMLYLYNWWEVGHGQSYFDRFNGESPFTHLWSLSIEGQYYLIWPLILIAMILIIRRKKVI AYILLALAAISGLLMGVLYTGPDALNRVYYGTDTRMFSIVFGALLAIIWPSTHLRKNISG GSRWTLNVIGILSIGVMAVMFFKLAGQNTFTYRGGMFIMAVVSTTLVAACAHPGADINRW LTNPVFAWIGTRSYGIYLYQFPVMIFYEMKIQDIADHPILNALIEVVLIMVISELSYRYI EKPLRHYHYKQLGRSITEFVKPNSQFGLKRLWMLPALGLIGICLYGSAIAPTKAQKNILQ ENILKNQSKANAHNKVALAKQKKAKKLAENKRKMHALMTKKLTRKQYLIAKKYRLSKAQY LVASHQPLTAVGDSIMADNSHDLQTVFKQAYVSAKVGRQIWQAGDVLTALKKRGELAPNV LINLGTNSPMTSAQIAKVVKTIGKGHRIFWVNTHVPTRNWETEVNATLGMAAKKYKNFYV IDWHSYSVNRSDWFWQDNVHPNPQGNIHYTHLVAKEIAHQLMPAS >gi|238617806|gb|GG669615.1| GENE 107 111715 - 112470 538 251 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0771 NR:ns ## KEGG: Lbuc_0771 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 250 1 247 248 207 52.0 3e-52 MKKYQVSLALGTILILGLAGCHGNKQSNQHQNKEKAAMSAKMANDDSSASESSSTNSSLT HYKYKVPKSEKQNRDYVADGHLTNKHQFSYDRFGTKQQLAKKATPSSTFNSDKVTYRILN VRVLKNSAKTSAAKQAASQVLNLSSVPDTYYTFVINYEVTNQQQQTIALNGVSSVKTNQG QTLQTSNQLTDSSAGSQIPAGKSRQFVMNGYLYHYDKDPASNLAINFGPIFDTKGTKIAS APSHALQVTLS >gi|238617806|gb|GG669615.1| GENE 108 112482 - 112769 260 95 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0772 NR:ns ## KEGG: Lbuc_0772 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 95 1 95 95 121 69.0 9e-27 MNLDEFYRASATLDSKLTLLISKGEHFIPINQLTRDDHVLFLGSASKSQSGTATITLDQF MTRTRLLPAQTNLRTSNNHQLVFGFRIVNKSIVFY >gi|238617806|gb|GG669615.1| GENE 109 112885 - 113832 790 315 aa, chain + ## HITS:1 COG:SP0674 KEGG:ns NR:ns ## COG: SP0674 COG1234 # Protein_GI_number: 15900575 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Streptococcus pneumoniae TIGR4 # 2 308 1 309 309 357 57.0 1e-98 MMQIEFLGTGAGSPGKFRNVSSLALRLLDEINSVWLFDVGEGTQHQILRSTIRPRKIDKI FISHLHGDHIFGLPGLLSSRSFQGGFEPLDIYGPKGIKEYVEVSLKISESHLSYKIRFHE LTKQTNGLIFEDNKFSVYAAPLDHRILSIGYRVVEHDHPGELMVDKLTQLHIPSGPVYGR LKKGETVTLDDGRVVDGKQMIGPAQPGRIVTIIGDTRKTENAVKLARNADVLVHESTLGK SETKLARSHYHSTNVQAAQIAKKAHVKKLLLNHISARYTGKLVYELEKQAKVVFPNTKVV KDFDVIDIPFKKLDS >gi|238617806|gb|GG669615.1| GENE 110 113925 - 114347 322 140 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0774 NR:ns ## KEGG: Lbuc_0774 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 23 140 20 137 137 108 66.0 5e-23 MCILKKQVTTIISIILIILIAVFAMLNLEKVDVSFGFTSVEMPLVLLILVCLLIGALIIF LFSSTQNIRQNREYKELQNQSDERQQELTDQINHLQDSLKALETRLKNSSGKQEIGAKDQ QISDLESEIEKLTDKLSSQK >gi|238617806|gb|GG669615.1| GENE 111 114363 - 116693 1750 776 aa, chain + ## HITS:1 COG:L0259_1 KEGG:ns NR:ns ## COG: L0259_1 COG0608 # Protein_GI_number: 15672614 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Lactococcus lactis # 1 570 1 558 558 475 42.0 1e-133 MIDSKFKWQIRQNTDPQQVQALSEALKIDPLIASILLQRGVSTEEAAQDFLTPSSKDFHD PYLMHDMKKGIARIQHAVENEEQITVYGDYDADGITSTTIMYEVLNDLGANVDYYIPNRF SDGYGPNVDAFEKIINNGTTLIITVDNGVAGNEAIDVANSLHCDVLVTDHHSLPEVLPNA YAIIHPRVKNQEGRAYPFGDLSGAGVALKVAQALMEDLPIDFIDVAAIGTVADIVSLKDE NRAIVKFGLNAIRNTQRPGLLALIKAADIDLSKFDEQDIGFGIAPRLNSLGRIDDANIGV ELLSTFDDQKATELAKFADHQNDSRKSLVDEFYQQAVQMVESSGDAENRSTLVVVGDDWH QGVLGIVASKLVEKYGRPTIVLTSQDGNDQVKGSGRSVESFDLFSAIDPIRDQTIGFGGH HSAVGLTINKDKISVLKDQLEKAAEDQELDLSQKPTLDIAAKISADQIDNQFIKNLNVLA PFGQDNPKPVFEIEYDQLIDVKTMGKTGDHLRFSLVKNKSRLTAVAFGQGAAAGQLSNGS ASIKVSGEINENTWNNHTTIQLMVSDLKQIALPIVDERTQKLHKQMFSQLGTYVFFHENV FTQLKGYINDDSSALMYDQLASNKIVGTKLFIVDCPDVVDDLATVLRHSHPKTTVLYLYK KRLISRIGMPDRSSYAKLFRFVKNNPNLNIGTQLQKLAKQLNLTSRTVVFMIQVFLELDF ITIHDKIINLNPHYLSKDLKSAPSYHLRQEQVKTEKALLVSNTKELVSFVKGYLDN >gi|238617806|gb|GG669615.1| GENE 112 116711 - 117229 420 172 aa, chain + ## HITS:1 COG:BS_apt KEGG:ns NR:ns ## COG: BS_apt COG0503 # Protein_GI_number: 16079815 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Bacillus subtilis # 3 172 1 170 170 224 61.0 7e-59 MSIDFSKYIASYPDFPEPGVLFRDISPMLENGEVYRAATDQIVQFAKDRNVEMIVGPEAR GFIVGCPVAYKLGVGFSPARKKNKLPGETIEESYGLEYGKSSLYLRTNAVKPGQRVLVTD DLLATGGTIDATIRLVEKLGGIVVGTAFLIELTELKGREKVKDYDFFTLLKY >gi|238617806|gb|GG669615.1| GENE 113 117667 - 118311 263 214 aa, chain - ## HITS:1 COG:lin0035 KEGG:ns NR:ns ## COG: lin0035 COG0586 # Protein_GI_number: 16799114 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Listeria innocua # 1 211 4 214 219 198 51.0 7e-51 MSTLIDFILHIDDHLINIVNTFGNSTYLILFAIIFIETGIVIFPFLPGDSLLFAAAALAA NATYGLNIELFVALFLIASITGDSLNFYLGKKFGELIPRHKVLGKFIKEKDLDKARTFFN KYGAMAIFLGRFMPIIRTLMPFVSATSDFPYTKFIKYNVSACIAWVAICCGAGYFFGNIP IVKENFSMVIIGIVIISLIPACIGFIKAKMTPEK >gi|238617806|gb|GG669615.1| GENE 114 118554 - 118931 105 125 aa, chain + ## HITS:1 COG:SPy1619 KEGG:ns NR:ns ## COG: SPy1619 COG1098 # Protein_GI_number: 15675497 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted RNA binding protein (contains ribosomal protein S1 domain) # Organism: Streptococcus pyogenes M1 GAS # 3 125 1 115 125 99 39.0 2e-21 MGLEVGMKVKGVVTGIQPYGVFVDLGNQNQGLIHISECQSGYVEDINQLFSVGEIVSSLI IDIDEYTGKISLSTRSNSVNYEVFKQSANGRFSNHHYWTNYRLNIGFSTLSKRRSEWMED AKDFF Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:39:10 2011 Seq name: gi|238617805|gb|GG669616.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD13, whole genome shotgun sequence Length of sequence - 2971 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 4, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 316 207 ## LKI_10806 recombination protein - Prom 520 - 579 3.5 - Term 555 - 587 -0.9 2 2 Tu 1 . - CDS 597 - 1550 585 ## COG5655 Plasmid rolling circle replication initiator protein and truncated derivatives - Prom 1742 - 1801 5.9 + Prom 1590 - 1649 5.2 3 3 Tu 1 . + CDS 1718 - 1999 80 ## gi|227510802|ref|ZP_03940851.1| hypothetical protein HMPREF0496_2965 + Term 2087 - 2126 5.3 - Term 2074 - 2114 5.5 4 4 Tu 1 . - CDS 2198 - 2887 500 ## LKI_10806 recombination protein Predicted protein(s) >gi|238617805|gb|GG669616.1| GENE 1 1 - 316 207 105 aa, chain - ## HITS:1 COG:no KEGG:LKI_10806 NR:ns ## KEGG: LKI_10806 # Name: not_defined # Def: recombination protein # Organism: L.kimchii # Pathway: not_defined # 1 105 1 105 361 147 76.0 1e-34 MSYLVANMQKLKADNLVGLGNHDQRRTQNHKNTDIDVDRSALNYDLVAGRTNHFKTDIED YINEHKTSQRAVRKDAVLVNEWIISSDSQFFADLTAADTRKYFET >gi|238617805|gb|GG669616.1| GENE 2 597 - 1550 585 317 aa, chain - ## HITS:1 COG:pli0015 KEGG:ns NR:ns ## COG: pli0015 COG5655 # Protein_GI_number: 18450301 # Func_class: L Replication, recombination and repair # Function: Plasmid rolling circle replication initiator protein and truncated derivatives # Organism: Listeria innocua # 4 316 14 327 327 324 52.0 1e-88 MSEIFEDKTENGKVRPWRERKIENVRYAEYLSILEFKRAHDIKNCGETLRFRKINNQLKL YQTWFCQKRLCPLCNWRKSMKNSSQLKQIIAEAVAREPKGRFLFLTLTVKNAHSAEELKV SLRALTKAFNKLTRYKKVTKNLLGYLRSTEITVNEQDGSYNQHLHVLLFVKSSYFKNSNN YLAQAEWAKLWQKALKVDYEPVVHVQAVKANKRKGTDSLQASAEETAKYEVKSADYMTAD DERNLAVIKDLEYALAGTRQISYGGLFKQIKQDLQLEDVENGDLVHVGDEDYTKEQMEAA EEVVAKWDFNKQNYFIW >gi|238617805|gb|GG669616.1| GENE 3 1718 - 1999 80 93 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227510802|ref|ZP_03940851.1| ## NR: gi|227510802|ref|ZP_03940851.1| hypothetical protein HMPREF0496_2965 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0519_0252 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0519_0252 [Lactobacillus hilgardii ATCC 8290] hypothetical protein HMPREF0496_2965 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 93 15 107 107 158 98.0 1e-37 MSFFQPIYNPNNTPKAYKIKGYRLNTKKLVDHTSIKIRRNRRKTTVSNPQKADQQKSLNC FFKTMAFSHTDQLNQLDPTNEREPPLKLTPYSP >gi|238617805|gb|GG669616.1| GENE 4 2198 - 2887 500 229 aa, chain - ## HITS:1 COG:no KEGG:LKI_10806 NR:ns ## KEGG: LKI_10806 # Name: not_defined # Def: recombination protein # Organism: L.kimchii # Pathway: not_defined # 1 227 135 359 361 183 47.0 5e-45 MGIVPFDDEHKLSAKRVFNRTALRDIQDQLPTYLQQHGFNVQRGVQESERKSLTVPEYKA MRESIKQSQQKLAAVETETKQRQAKLKTYQATKFDVNSVKTKESRFHKRYVLVDRFDFDK LKQGASLTDTYFTETLSQRSDMDIQKDQLIKAESKAMELDIENRRLQKLVGTLQGIVRSV DRFLQRKLGVGLPDKWLERAGLKEPAKKAPQRPQERFKEQHDELDGPSS Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:39:23 2011 Seq name: gi|238617804|gb|GG669617.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD14, whole genome shotgun sequence Length of sequence - 2132 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 9/0.000 - CDS 60 - 797 486 ## COG1484 DNA replication protein 2 1 Op 2 . - CDS 807 - 2030 510 ## COG4584 Transposase and inactivated derivatives - Prom 2055 - 2114 3.6 Predicted protein(s) >gi|238617804|gb|GG669617.1| GENE 1 60 - 797 486 245 aa, chain - ## HITS:1 COG:MA1049 KEGG:ns NR:ns ## COG: MA1049 COG1484 # Protein_GI_number: 20089920 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Methanosarcina acetivorans str.C2A # 8 245 9 246 257 206 44.0 4e-53 MTTNNQILLNNLERLGLNKIREYLPNYLDQIHTDNLSLTEALIDLTNSELQNRHEGQIAR AIGRARFPNTKSLDTFDFSFQPSINRQEVLEFQNLAFMEKSENLIFIGNPGVGKTHLAIS IGIEACKQGCRVLFINCHELLIRLRAAYEKGLLDRSLSRYSRYDLLIIDEIGYLPIGHQE ANLLFQLVNARYEKHSTIITSNSDLSAWVDIFQNPTVTAAILDRLVHHVHVVKITGKSYR LRGLK >gi|238617804|gb|GG669617.1| GENE 2 807 - 2030 510 407 aa, chain - ## HITS:1 COG:pli0003 KEGG:ns NR:ns ## COG: pli0003 COG4584 # Protein_GI_number: 18450289 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 407 1 408 408 400 52.0 1e-111 MRRDLREGVTIYVTENIKPNFAEIARQYNVDYRTVKKAYEEVKAGLKGRPSGRPKRPSLL DPFKQTIDSKLELNCSAASIFKFIQKKGFTGSYTLVKDYCRQTRRERVKKATIRIEHSPG LSAQVDWKEEMALVSSEGELFKFNIFLYVLPYSKLKYMTLTFDRSQDTLFSCLHDAFLHT GGIPTEIWFDNMKTVVDHTKSQFGHAVFNERFHEFCKDAGFTPIACRPFRPQTKGAVEAL ARTVERLRPYNTEFADGTELIELVHMLRDDLNHETSQATDEVPYLKWLDEEKEYLHRVPV NLLEPYFEENITRVVSKEAMINFRKCKYSVDPRYIGCTVAVEISNDEQRIHIYYNGEEIR THSITTNSLNYDPQDQFNILKSDLLKGRTDEDISAYIREHMTDYDNL Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:39:25 2011 Seq name: gi|238617803|gb|GG669618.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD15, whole genome shotgun sequence Length of sequence - 2105 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 - CDS 3 - 894 708 ## COG0550 Topoisomerase IA 2 1 Op 2 . - CDS 941 - 1501 404 ## COG0550 Topoisomerase IA 3 1 Op 3 . - CDS 1530 - 2087 337 ## LPST_P0018 nickase Predicted protein(s) >gi|238617803|gb|GG669618.1| GENE 1 3 - 894 708 297 aa, chain - ## HITS:1 COG:CAC3567 KEGG:ns NR:ns ## COG: CAC3567 COG0550 # Protein_GI_number: 15896801 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 4 227 369 596 709 126 35.0 5e-29 MTKVVPTKDQLAALPKLQQQVYDLVLRTTLAMFADPYEYEETTIITQVGDANFKATGKVP TKQGWQALFDDHKTDQQEAATLPIVHQGDQVQANLQTPQKETTPPVPFTEGTLITAMKTA GKTLDDEVAQAILKDVQGIGTSATRANVLEVLKKRGYLVTEKNKLHVSEAGITLCKAVEL EPLLTSPEMTAKWEQALQQISTEERTPDNFLSQIKKFVAKLIADVPKQLAGNVAIKQQIG HQQQAQKGADVFLETPQVTVLKKQKFYLVKPKQGEDFTLPKRWSSKTLGKTAIKALV >gi|238617803|gb|GG669618.1| GENE 2 941 - 1501 404 186 aa, chain - ## HITS:1 COG:YPO2165 KEGG:ns NR:ns ## COG: YPO2165 COG0550 # Protein_GI_number: 16122397 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Yersinia pestis # 1 160 175 342 642 101 37.0 7e-22 MNGSPLYTLLLRQNGVRGVYSIGRVQTPTLYMVYQRDQAIKNFKPEPYFELNAEILANQQ KFVAKLDPYQRFKDEAGLMTFMQAKYVQKGSQDGFIKDVQKQGKKRASPQLFSLSSLQSA MNKRYHASASQTLAAIQSLYEDKLLSYPRTDCAYITDEEFDYLVANLTKYLGLVSKQVAL TNTAPE >gi|238617803|gb|GG669618.1| GENE 3 1530 - 2087 337 185 aa, chain - ## HITS:1 COG:no KEGG:LPST_P0018 NR:ns ## KEGG: LPST_P0018 # Name: not_defined # Def: nickase # Organism: L.plantarum_plantarum # Pathway: not_defined # 1 185 502 686 686 341 99.0 1e-92 MIKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQLEN HHLQRVLKHDGTKQLFFGECKADPTIKNSQIEKIQKQLKGQQAKDDQYRKVNIGHYQPLN YKPVSPSYYLKTAFSNAIMTALYARDEDYERQKQAQGLKETEWEMTKKQRQHQTRNRHED GGMHL Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:39:29 2011 Seq name: gi|238617802|gb|GG669619.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD16, whole genome shotgun sequence Length of sequence - 1850 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 70 - 276 58 ## - Prom 376 - 435 6.6 + Prom 71 - 130 4.3 2 2 Tu 1 . + CDS 197 - 1711 1515 ## COG1070 Sugar (pentulose and hexulose) kinases + Term 1726 - 1771 3.3 Predicted protein(s) >gi|238617802|gb|GG669619.1| GENE 1 70 - 276 58 68 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MMSPSLVTAETLTALVPRSTPKTHSVIITPPLLRKKEWKVSSIPLYYMLSILQFVSLGVT INVSFKII >gi|238617802|gb|GG669619.1| GENE 2 197 - 1711 1515 504 aa, chain + ## HITS:1 COG:BS_xylB KEGG:ns NR:ns ## COG: BS_xylB COG1070 # Protein_GI_number: 16078824 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Bacillus subtilis # 5 499 4 498 499 556 52.0 1e-158 MTECVLGVDLGTSAVKVSAVTKDGDIIAQEGMDFPLRQPKPGYAEQDPEDWVSATTVAIV RLILTDKLKPEEIKGISYSGQMHGLVLLDKDNQVLRPAMLWNDTRSTKQREEIMAKMGDR FIEITHNQPLEGFTLPKLLWVKENQPEIFAKAKTMLLPKDYVRFRMTGNLAIDYSDATGT VMLDVEKQQWSQEILDAFDIPMSLCPSLVRSIDDTGNIDDWYAEYSGLSTDTKTFGGGAD NACGAVGAGIDSPTKVLSSIGTSGVILKYEPNKETNYNGVLQYEDHAIPDAFYSMGVTLA AGFSLSWFKKTFAADEDFTSVVESAAKSTVGANGLLFAPYIVGERAPYADADIRGSFIGI DGIHKRYDFVRAVLEGIIFSFRDLMDEYEAKGSQFDTVVSIGGGAKSPLWQQIQANIFNT RVVSLKNEQGPGLGASMLAAVGLGWFKSVSECTKVFVQFKDVFLPEPANVKKYQKLHEIY KKIYPSTKEMTHELVDYRRENQEK Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:39:35 2011 Seq name: gi|238617801|gb|GG669620.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD17, whole genome shotgun sequence Length of sequence - 1815 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 447 261 ## LKI_10816 replication protein - Term 461 - 498 -0.9 2 1 Op 2 . - CDS 520 - 675 91 ## gi|190571844|ref|YP_001967738.1| CopG - Prom 708 - 767 5.6 3 2 Tu 1 . - CDS 879 - 1088 224 ## gi|227509212|ref|ZP_03939261.1| hypothetical protein HMPREF0496_1375 - Prom 1218 - 1277 3.6 - Term 1514 - 1561 6.8 4 3 Tu 1 . - CDS 1570 - 1803 172 ## pWCFS102_02 replication protein Predicted protein(s) >gi|238617801|gb|GG669620.1| GENE 1 3 - 447 261 148 aa, chain - ## HITS:1 COG:no KEGG:LKI_10816 NR:ns ## KEGG: LKI_10816 # Name: not_defined # Def: replication protein # Organism: L.kimchii # Pathway: not_defined # 1 148 1 137 227 224 83.0 1e-57 MAKDKSRYFTFLLYPESIPEDWKSKLELIGVPIAISPFHDMDEKTDKSKWTPDDVIRNGK HYKKPHYHVVYVAKNPVTADSVRYKIKQLLGDRSIAKVQIVIRSMASMYSYLTHESKDAI EKKKHKYNKKDITLINNFDIDRYISLDV >gi|238617801|gb|GG669620.1| GENE 2 520 - 675 91 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|190571844|ref|YP_001967738.1| ## NR: gi|190571844|ref|YP_001967738.1| CopG [Lactobacillus sakei] CopG [Lactobacillus sakei] # 1 51 1 51 111 81 94.0 2e-14 MATNKKRITVSLTEDQYFTLENLAKEKGFSKSAILALALENYSRKELEQKK >gi|238617801|gb|GG669620.1| GENE 3 879 - 1088 224 69 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509212|ref|ZP_03939261.1| ## NR: gi|227509212|ref|ZP_03939261.1| hypothetical protein HMPREF0496_1375 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1375 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 69 1 69 69 126 100.0 4e-28 MQRKAHLLFLPASRRVRGEFEREHPLIYGVKLTQLAGLGSAHGFIRVGYKFENQGGEGAN FATVLRPPF >gi|238617801|gb|GG669620.1| GENE 4 1570 - 1803 172 77 aa, chain - ## HITS:1 COG:no KEGG:pWCFS102_02 NR:ns ## KEGG: pWCFS102_02 # Name: repB # Def: replication protein # Organism: L.plantarum # Pathway: not_defined # 1 77 143 219 219 153 97.0 3e-36 MLNDVCDLIDDHNLANMRELRRFLKAHGSEYGMPSIKVVNSVLRAHTGLIRLYFDAVYQE RKYGRGDIDKETGEIQD Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:39:51 2011 Seq name: gi|238617800|gb|GG669621.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD18, whole genome shotgun sequence Length of sequence - 1514 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 21 - 80 5.3 1 1 Tu 1 . + CDS 254 - 1423 740 ## COG3547 Transposase and inactivated derivatives Predicted protein(s) >gi|238617800|gb|GG669621.1| GENE 1 254 - 1423 740 389 aa, chain + ## HITS:1 COG:MA2729 KEGG:ns NR:ns ## COG: MA2729 COG3547 # Protein_GI_number: 20091553 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Methanosarcina acetivorans str.C2A # 4 389 4 386 414 162 30.0 1e-39 MDVITEKCCGIDVHQKQITLTTLIGRADQKPRKNSRRYGTTSPELRQCANWLLEKEVEVV LMESTGQYWRPVWQILEPYGFKMVLCNPRIIKNIPGKKTDQKDSEWIAELARLGLVAASF IPPRPIQELRESTRTRKSLTETATSIKNKIHNILQRSNIKLTTYVTDIFGSSGQKLLVLL IQGKPINLQTVSKCMHAKLKAKPEMIVAALDGSLSPSDRQILKIELALLADVQQAIHALE LLIEEQLQPLEELYLRLQTIPGISKHIAQIVIAEVGTDVSPFPTAHHLASWAGLCPGNYE SAGQSKSSHILHGNVYLKTALVTAALGAKRQTCSGLKDFFYRLKGHMSAQKAVVALAHKL LRITYAMIETGSSYQEYRKDQRAKALVGQ Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:39:51 2011 Seq name: gi|238617799|gb|GG669622.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD19, whole genome shotgun sequence Length of sequence - 1449 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 24 - 83 3.9 1 1 Tu 1 . + CDS 116 - 1372 569 ## COG3464 Transposase and inactivated derivatives Predicted protein(s) >gi|238617799|gb|GG669622.1| GENE 1 116 - 1372 569 418 aa, chain + ## HITS:1 COG:SP1582 KEGG:ns NR:ns ## COG: SP1582 COG3464 # Protein_GI_number: 15901424 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pneumoniae TIGR4 # 1 416 1 404 418 194 32.0 3e-49 MSQDKLILNLVGLKDPHIHFEADAKTQTGLYHGHPALFINAKLLKKISQCPNCGFADCLV KDGHKTVNLKLSPQRFHLLILRLAKQRFLCKHCGSIITSQTDAVKPNCQISKNVWQSVVM DFHDNMAATLIAKQNGVSASTVNRAYPQAAQMISNRFVRLPKHLSFDEFTSSHQNRRMRF IFQDADHHNRVVILYGRRKAFLRSYFMQYSHKERARVKTISVDLNAGYVHLIPELFPKAK IIIDRFHIIQMTQRSLNEVRLSVAKKQPHSSREYRMIKKYWRLFDKPFDKLEAKRLYYRT PLKREMTSQRIVTDAVALSPKFTSVYLVYQDILTAVQRHDQDLLAKTICDYRKLNCSMDT TIRSLKQNLKAVTNSLKYAYSNGPLEGVNRKIKAIGRTAYGYRNFDHYRTRIQMELFA Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:39:52 2011 Seq name: gi|238617798|gb|GG669623.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD20, whole genome shotgun sequence Length of sequence - 1411 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 16 - 1044 771 ## COG0002 Acetylglutamate semialdehyde dehydrogenase - Prom 1102 - 1161 10.7 Predicted protein(s) >gi|238617798|gb|GG669623.1| GENE 1 16 - 1044 771 342 aa, chain - ## HITS:1 COG:lin1633 KEGG:ns NR:ns ## COG: lin1633 COG0002 # Protein_GI_number: 16800701 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate semialdehyde dehydrogenase # Organism: Listeria innocua # 1 335 1 336 343 336 50.0 4e-92 MQAALVGVTGYAGMVLYQLLKDHPNIKKINIYDHKLTEPTTLESVAPVFKYEDAEVDPYD PTQIMADNDVVFFATSAGVTSKLSRPYLENHFPVIDLSGDMRLNTESSYEKWYHKPAAPE KYLRQAQYGLAEFESVKDQTYVANPGCYATATLLGLAPLIQNQLVDVKSVIVDAKSGTSG AGKKLSATTHFTETNDNLQIYKPNQHQHIPEIVQELHKWDKAVSSIQFMTTLIPVTRGIM STIYAHVNDGVTEAQLSQAYHKTYDQKPFVHFTETDLPTIKQVVGTNNCDIGLAYNPDTK VVMIDSVIDNMLKGAAGQAVQNFNQMFDYEQTAGLKLKQMLV Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:39:53 2011 Seq name: gi|238617797|gb|GG669624.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD21, whole genome shotgun sequence Length of sequence - 1394 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 406 - 465 9.9 1 1 Tu 1 . + CDS 624 - 1392 813 ## Lbuc_1557 hypothetical protein Predicted protein(s) >gi|238617797|gb|GG669624.1| GENE 1 624 - 1392 813 256 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_1557 NR:ns ## KEGG: Lbuc_1557 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 220 1 242 576 181 58.0 2e-44 MKKSMKKTLFAGVAALAFVAVAGTSTNASAKSFAKVTSNKKLTSDATTRNVNVNGTNALY TKAGTLKGAKVVATKTTLNGVKDSKQGQKNWRAYRVATTNRGSVYYKVVSFDKTYRGWIY GGKSTSNFAGGIASYDTTSAASSAPASSATFTLKNPGTSSLAYNAPAWSQYKVGRATVDG KVVTTTTPYSGASFTVTKAVTTSREGETWYQVSAAPASSASTSSANSSAASSASASAAAQ SAAAQLNGKWIKASDL Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:39:58 2011 Seq name: gi|238617796|gb|GG669625.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD22, whole genome shotgun sequence Length of sequence - 1365 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 40/0.000 - CDS 3 - 897 346 ## COG0642 Signal transduction histidine kinase 2 1 Op 2 . - CDS 887 - 1345 402 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Predicted protein(s) >gi|238617796|gb|GG669625.1| GENE 1 3 - 897 346 298 aa, chain - ## HITS:1 COG:lin1852 KEGG:ns NR:ns ## COG: lin1852 COG0642 # Protein_GI_number: 16800919 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 23 298 15 310 346 138 30.0 1e-32 MENNTKLVFKVIVSEWTNLVIYLLFLSLFYFICILYKIDLNVIGDLIRYTIMPFLMIIGF QAYRKYTDVKSINTLIREGNFKQIHLHGFYGHLYARALRKVTKQRLTESKSLTASLKTRK DYLTLWSHEMKTPLTSLLMIAENNPTVPSEEVSEKIELVNYQLKQLLTFDRLDDFNHDLV FEKIDLSDCIKRVIQQNASFFLSHEVMPKIAVPPVKILTDSKWLSFILEQVITNAVKYSN KNGVVQISFNNDTLTITDHGIGITKSDLPRVFEQGFTGGNGRTHGEATGMGLYMTQQI >gi|238617796|gb|GG669625.1| GENE 2 887 - 1345 402 152 aa, chain - ## HITS:1 COG:L0133 KEGG:ns NR:ns ## COG: L0133 COG0745 # Protein_GI_number: 15673729 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Lactococcus lactis # 1 148 75 223 223 115 40.0 4e-26 MFVSAAEMDPNAIRAISIGADDYLTKPFSVDVFVSKIQAILRRTNQNNHLAETISFNTFS LNIITNVLKSQNESVKLTTTEGTILKLLFLNPDQVISKKKIIKSIWQNGDFTDENILNVN MSRLRDKLGQIGLADKIVTEYGKGYRLLDNGK Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:39:59 2011 Seq name: gi|238617795|gb|GG669626.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD23, whole genome shotgun sequence Length of sequence - 1141 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 67 - 384 111 ## LPST_P0013 hypothetical protein 2 1 Op 2 . - CDS 446 - 766 239 ## LPST_P0012 hypothetical protein 3 1 Op 3 . - CDS 759 - 1139 234 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair Predicted protein(s) >gi|238617795|gb|GG669626.1| GENE 1 67 - 384 111 105 aa, chain - ## HITS:1 COG:no KEGG:LPST_P0013 NR:ns ## KEGG: LPST_P0013 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_plantarum # Pathway: not_defined # 1 101 24 124 131 176 93.0 3e-43 MMKWQGFYLSDHTAALNQQNQQLNAVYVPRPQQSLAVITEVLADAYQRQQPVTIQLKTVD QNNRYLPDITTLIHGYNANDIVIDADRLIPLQEIRNVAYKKTEKL >gi|238617795|gb|GG669626.1| GENE 2 446 - 766 239 106 aa, chain - ## HITS:1 COG:no KEGG:LPST_P0012 NR:ns ## KEGG: LPST_P0012 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_plantarum # Pathway: not_defined # 1 106 1 106 106 194 99.0 1e-48 MNSDIEIIKGRLTLLFKRRPQTRYWLMLTNDTYDQTYNLFFNSQRANERLQSVPLHKLAH YDLADLEKLLKALRQDIKLTIEFVGFTGERWPASQKLIQRKRVPLE >gi|238617795|gb|GG669626.1| GENE 3 759 - 1139 234 126 aa, chain - ## HITS:1 COG:lin2823 KEGG:ns NR:ns ## COG: lin2823 COG0389 # Protein_GI_number: 16801884 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 13 121 310 418 418 89 38.0 2e-18 IGFSYAAAEADGRGGFNQALKIEPTNDNQVLTQQLLWLFRQNWDGQAVRNIGVYSSKLSA NSGQQLNLFEPPRNQIRHSRLNQVIDEIHRQFGFTKLVYATSLLKGGTAIKRASLVGGHN GGNSYE Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:04 2011 Seq name: gi|238617794|gb|GG669627.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD24, whole genome shotgun sequence Length of sequence - 1071 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 15 - 983 521 ## COG2826 Transposase and inactivated derivatives, IS30 family - Prom 1009 - 1068 3.0 Predicted protein(s) >gi|238617794|gb|GG669627.1| GENE 1 15 - 983 521 322 aa, chain - ## HITS:1 COG:BH2524 KEGG:ns NR:ns ## COG: BH2524 COG2826 # Protein_GI_number: 15615087 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Bacillus halodurans # 1 314 1 311 314 107 29.0 2e-23 MTYTHLTIDELTTIYSFWKLNKKAYRVAPALHRSAETVYRIYRFLDAGGTLIDYQQHYRR HKQHCGRKPIQLSPDELVYIQAKIQAGWQPDTIINRHERSFSCGVRTLYRIFKRDAFGLF AKDLPMHGQRHPNGYVERRGKAGQLGRDLKTRYQDYPNFKREFGHLEGDTVQGKNHQGAV TTLVERQTKVAIVLNSHTKSSQNVNRSLAAWLTKLPRHLFKSITFDNGKEFAGWRTIANQ FDLNIYFAAVGAPNQRGLNENTNNLLRKDGLHHDLIMDQLSDEFVQAVASRRNHIPRKSL NYQTPLEAFVNQITDEQLKFLT Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:05 2011 Seq name: gi|238617793|gb|GG669628.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD25, whole genome shotgun sequence Length of sequence - 1033 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 23/0.000 + CDS 38 - 301 270 ## COG2963 Transposase and inactivated derivatives + Prom 428 - 487 6.4 2 1 Op 2 . + CDS 520 - 1033 41 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|238617793|gb|GG669628.1| GENE 1 38 - 301 270 87 aa, chain + ## HITS:1 COG:pli0025 KEGG:ns NR:ns ## COG: pli0025 COG2963 # Protein_GI_number: 18450308 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 2 87 9 93 97 60 38.0 9e-10 MKYYSDEFKNNIVKLYHNENRSKKSLANEYGVHPTTISHWIKRAKLVELPDGGVTSVEAF KQLQKENQQLKEENEILKAAAVLLGRH >gi|238617793|gb|GG669628.1| GENE 2 520 - 1033 41 171 aa, chain + ## HITS:1 COG:L0436 KEGG:ns NR:ns ## COG: L0436 COG2801 # Protein_GI_number: 15673177 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 5 169 72 239 279 137 43.0 1e-32 MRRLGVVIGPNRVYRLMQELGIRSLMGRRFKKPGTHVDYSQRPNLIKNHPIGTIWRADIT YLELRPGTWAYLSTIFDQVSKQIIAFNIGKEMTSKLIIKTLLQALRRASKPTFLHSDMGS QYTSIAYEGLLKRHLIRHSYSKQGYPYDNGPLEAFHSLLKREFIFQTRFTS Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:06 2011 Seq name: gi|238617792|gb|GG669629.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD26, whole genome shotgun sequence Length of sequence - 1000 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 816 765 ## COG0166 Glucose-6-phosphate isomerase 2 1 Op 2 . + CDS 849 - 999 70 ## COG0166 Glucose-6-phosphate isomerase Predicted protein(s) >gi|238617792|gb|GG669629.1| GENE 1 1 - 816 765 271 aa, chain + ## HITS:1 COG:lin2466 KEGG:ns NR:ns ## COG: lin2466 COG0166 # Protein_GI_number: 16801528 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Listeria innocua # 1 257 42 298 450 344 65.0 9e-95 SDFRDWLTLPKDYDKAEFARIKQAAKKIQGDSKVLVVIGIGGSYLGAKMAVDFLNDTFFN YLPDDQREFPQVFFAGNSLSPSYVYDLLHLIGDRDFSVNVISKSGTTTEPSIAFRIFKDK LIQKYGAEGAKERIYATTDKAHGALRQEADANGYETFIIPDGVGGRYSVLTPVGLLPIAV SGASIDDLMKGAADAADAYTDPDLTKNEAYQYAAYRNILYRKGFTTELLENYEPNMQYLA EWWKQLMGDPKVRIKKGSTLHPPTSRLICIP >gi|238617792|gb|GG669629.1| GENE 2 849 - 999 70 50 aa, chain + ## HITS:1 COG:SA0823 KEGG:ns NR:ns ## COG: SA0823 COG0166 # Protein_GI_number: 15926551 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Staphylococcus aureus N315 # 2 50 321 369 443 68 65.0 3e-12 METVVKVDHPNHDEDIPKEADNLDGLKYLEGRTMDFANTKAFEGVVLAHT Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:07 2011 Seq name: gi|238617791|gb|GG669630.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD27, whole genome shotgun sequence Length of sequence - 967 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 13 - 873 325 ## SDEG_0852 transposase - Prom 898 - 957 4.7 Predicted protein(s) >gi|238617791|gb|GG669630.1| GENE 1 13 - 873 325 286 aa, chain - ## HITS:1 COG:no KEGG:SDEG_0852 NR:ns ## KEGG: SDEG_0852 # Name: not_defined # Def: transposase # Organism: S.dysgalactiae # Pathway: not_defined # 24 278 23 277 287 203 45.0 8e-51 MSSQYYLTQPTTIVQAPWQPWVAVVTPLYQRYVSCKIRQRKNANHAKISDVTIMALMCWQ VSLGITNQCAFYRLLVGLGLTGLPERSRFNRRCTAMGCLLQTLRVGLVKHCLPSVTYTII DSFPIPLCQSIRNHRAKVLRSLADIGYNATKKQWFYGLKGHFQVTNQGIVVAYSISAASI HDIRLVPELIDQYACSHVLADVGYLSQPLKDQLKQRHIDFWTPQRRNMPQSRLNSTLLKR QRRMIETLFSKWQVLFQVEHNRARCLRGFKSRLEQLLFVDTWQLIN Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:12 2011 Seq name: gi|238617790|gb|GG669631.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD28, whole genome shotgun sequence Length of sequence - 854 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 6/0.000 - CDS 8 - 346 204 ## COG3293 Transposase and inactivated derivatives 2 1 Op 2 . - CDS 487 - 795 229 ## COG3293 Transposase and inactivated derivatives Predicted protein(s) >gi|238617790|gb|GG669631.1| GENE 1 8 - 346 204 112 aa, chain - ## HITS:1 COG:msr8681 KEGG:ns NR:ns ## COG: msr8681 COG3293 # Protein_GI_number: 13474982 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mesorhizobium loti # 24 111 92 180 187 68 37.0 2e-12 MTRANVSDRDGASAMIALHAMHLRQVQNVLVDGGYSGVNFQLDVASNLNATVQVAKRNEL HRFEVMPQRWVVERSFSWLENCRRLWKNCERQLTTSLQMVVLAFLALLLKRF >gi|238617790|gb|GG669631.1| GENE 2 487 - 795 229 102 aa, chain - ## HITS:1 COG:alr7025 KEGG:ns NR:ns ## COG: alr7025 COG3293 # Protein_GI_number: 17233041 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Nostoc sp. PCC 7120 # 2 71 3 72 262 77 44.0 8e-15 MKNYPSNITRQQFELIRPALENFRKRTKPRKYDLYEVFCAVLYVLKTGCQWRQVPGDFPE WRSVYNYYKIWSTKAEPTADSLLEQVLKKLSLLGELTKDVQL Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:13 2011 Seq name: gi|238617789|gb|GG669632.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD29, whole genome shotgun sequence Length of sequence - 839 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 806 383 ## LCAZH_p007 putative nickase Predicted protein(s) >gi|238617789|gb|GG669632.1| GENE 1 2 - 806 383 268 aa, chain - ## HITS:1 COG:no KEGG:LCAZH_p007 NR:ns ## KEGG: LCAZH_p007 # Name: not_defined # Def: putative nickase # Organism: L.casei_Zhang # Pathway: not_defined # 1 268 140 407 691 465 96.0 1e-130 MLTNRPFNPDGTWGLKSKRENILDENGNKTYTGNSRFPRSRKVWLVDWDKKEKINQWRHN WAASVNQALEQKNIPDRISEKSFVEQGIADTPMQHEGINSKRHERKAFNQQVKNYRKAKA SYKNNQEKVINRGHLDSLSKHLSFNEKRVVKELSHELKTYISLENLDDKRRMLFNWKNST LIKHAVGEDVTKQLLTINQQESSLKKADELLNKVVDRTTKKLYPELNFEQTTQAERRELI KETDSEQTVFKGSELNERLMNIRDDLLT Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:17 2011 Seq name: gi|238617788|gb|GG669633.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD30, whole genome shotgun sequence Length of sequence - 817 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 817 386 ## COG0675 Transposase and inactivated derivatives Predicted protein(s) >gi|238617788|gb|GG669633.1| GENE 1 1 - 817 386 272 aa, chain - ## HITS:1 COG:all7245 KEGG:ns NR:ns ## COG: all7245 COG0675 # Protein_GI_number: 17233261 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Nostoc sp. PCC 7120 # 1 263 60 311 407 140 34.0 2e-33 VKQEYPFLKASDSTSLFVVNHNLTLAFKNLFQHRGGHPRFKSRHSAKQAYTGQSICVVEA KRRLRLPKLGSIRTSKTNQLTDVKIKRYTVSHDATGRYYLSLQVETEVHDLPKTNQRVGL DMGVADLAITSNGVKYGTFKAKWFEKQATRWQSKFSRRKQRATVAMRQWNHHHQLSKMAL NDYQNWQRAKMTKARYQAKIANQRKDYLHKLTTDLVKNYDVIVIEDLKTKNLMRNHHLAK SIANASWSQFRTMLEYKCAWYGKQLVVVSARN Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:18 2011 Seq name: gi|238617787|gb|GG669634.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD31, whole genome shotgun sequence Length of sequence - 800 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 730 234 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|238617787|gb|GG669634.1| GENE 1 2 - 730 234 242 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 75 232 161 312 317 94 37 2e-20 DLHWSPEQITARFNKEHQWCVSYNTIYRHIYQHNLGEKYSSRGDTGIQRHLRHKHRTRHS KNTRRHREVQTDYISIHERPGFINQRQRIGDWEIDTVIGRTGHSILLTVVDRLSRLTLIK KVVQKDSQEINKGLVELLGAIPKEFVHSITPDHGTEFLHLDEISERLGVTVYWPDPYSPE QRGTNENTNGLIREYFPKRTDIDNYTEQDVEHCQKQLNQRPRKVLNYETPYEVFFDKPLH LV Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:19 2011 Seq name: gi|238617786|gb|GG669635.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD32, whole genome shotgun sequence Length of sequence - 711 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 147 - 185 4.4 1 1 Tu 1 . - CDS 372 - 671 239 ## COG3293 Transposase and inactivated derivatives Predicted protein(s) >gi|238617786|gb|GG669635.1| GENE 1 372 - 671 239 99 aa, chain - ## HITS:1 COG:alr7025 KEGG:ns NR:ns ## COG: alr7025 COG3293 # Protein_GI_number: 17233041 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Nostoc sp. PCC 7120 # 5 80 2 77 262 69 38.0 2e-12 MQHFSHHYQSDISRQQFDLIRQDLEASRKRTHPKHIDPYDIFCAMLYVLKNGCTWRDLPA DFPKWSTVYYYWMNWSKAPTPDKPALLTQVLKKLSLIDD Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:19 2011 Seq name: gi|238617785|gb|GG669636.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD33, whole genome shotgun sequence Length of sequence - 693 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 77 - 135 14.0 1 1 Tu 1 . - CDS 213 - 647 358 ## COG0477 Permeases of the major facilitator superfamily Predicted protein(s) >gi|238617785|gb|GG669636.1| GENE 1 213 - 647 358 144 aa, chain - ## HITS:1 COG:yhjX KEGG:ns NR:ns ## COG: yhjX COG0477 # Protein_GI_number: 16131418 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 144 270 393 402 65 35.0 3e-11 MGWLSDITGRKTVFFITYIIQLLSLIALLMTKPGSMSMAMMYIVVIAMAFCFGGNITVFP TYVSDYFGLKNTSRNYSMIYQGFGIGAIIIGFLMASGNPLDPKKVTLSNGAVLTQNFTLT YWVLLIMVVISLAIFAFIKKPIKK Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:20 2011 Seq name: gi|238617784|gb|GG669637.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD34, whole genome shotgun sequence Length of sequence - 690 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 14 - 73 3.6 1 1 Op 1 . + CDS 115 - 342 279 ## LCAZH_p006 hypothetical protein 2 1 Op 2 . + CDS 365 - 643 206 ## LSL_2003 hypothetical protein Predicted protein(s) >gi|238617784|gb|GG669637.1| GENE 1 115 - 342 279 75 aa, chain + ## HITS:1 COG:no KEGG:LCAZH_p006 NR:ns ## KEGG: LCAZH_p006 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_Zhang # Pathway: not_defined # 1 75 1 75 75 94 93.0 1e-18 MIGGIVMSQSNLEKQEAKLKALHQKIKDEKNKIEQRLGKQIISQANLDYANLSNDQIKLL AKQFSEFLKVKSVDH >gi|238617784|gb|GG669637.1| GENE 2 365 - 643 206 92 aa, chain + ## HITS:1 COG:no KEGG:LSL_2003 NR:ns ## KEGG: LSL_2003 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 1 92 1 92 92 106 91.0 4e-22 MSNQYEKLVDQQARLKPKIEREDFKLRQSKYYESRQARKARSRRLIQKEALLEKYFQADN LSVEETEELLKTFADYVNAHKPNKLKNDQPNN Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:24 2011 Seq name: gi|238617783|gb|GG669638.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD35, whole genome shotgun sequence Length of sequence - 677 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 467 - 526 6.6 1 1 Tu 1 . + CDS 551 - 677 96 ## Lbuc_2445 addiction module antitoxin, RelB/DinJ family Predicted protein(s) >gi|238617783|gb|GG669638.1| GENE 1 551 - 677 96 42 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2445 NR:ns ## KEGG: Lbuc_2445 # Name: not_defined # Def: addiction module antitoxin, RelB/DinJ family # Organism: L.buchneri # Pathway: not_defined # 1 42 1 42 93 73 100.0 2e-12 MAVKEKKRVQVQIDKELADNTEAVLSQLGLNPTTAINMFYKR Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:27 2011 Seq name: gi|238617782|gb|GG669639.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD36, whole genome shotgun sequence Length of sequence - 674 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 662 568 ## COG3533 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|238617782|gb|GG669639.1| GENE 1 2 - 662 568 220 aa, chain - ## HITS:1 COG:ECs4459 KEGG:ns NR:ns ## COG: ECs4459 COG3533 # Protein_GI_number: 15833713 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 201 373 580 656 144 35.0 2e-34 MSLDGKHFFYVNPLEADPAASKGNPGKSHVLTHRADWFGCACCPANLARLIASVDEYLYT EKGDTILSHQFIANDAEFDDGIQVSQTNHFPWSGDIHYEIQNPNQAAFKFGIRIPSWSAS YELNVDGAAKTLPVKDGFIYLDVDGQSLTIDLKLDMSTKIMRANNRVSHDFGKVAVQRGP VVYAAEQADNQAPLWLYQVSPDAQTDYHFDEKLLDGVGVI Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:27 2011 Seq name: gi|238617781|gb|GG669640.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD37, whole genome shotgun sequence Length of sequence - 673 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 98 - 655 390 ## LCAZH_p007 putative nickase Predicted protein(s) >gi|238617781|gb|GG669640.1| GENE 1 98 - 655 390 185 aa, chain - ## HITS:1 COG:no KEGG:LCAZH_p007 NR:ns ## KEGG: LCAZH_p007 # Name: not_defined # Def: putative nickase # Organism: L.casei_Zhang # Pathway: not_defined # 1 185 507 691 691 316 90.0 3e-85 MIKQEQAYTAVMYYDPALKPCKVETIAQWQETPPRVFNTQEHLQGLAYLSGQLSLDQLEN HHLQRVLKHDGTKQLFLGECKVDPTIKNSQIEKIQKQSKEQRAKDDQYRKANMGHYQPLN YKPVSPDYYLKTAFSDAIMTVLYARDEDYQRQKQERGLKETEWEMTKKQRQHQTRNRHED GGMHL Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:31 2011 Seq name: gi|238617780|gb|GG669641.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD38, whole genome shotgun sequence Length of sequence - 636 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 636 425 ## Lbuc_0577 hypothetical protein Predicted protein(s) >gi|238617780|gb|GG669641.1| GENE 1 3 - 636 425 211 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0577 NR:ns ## KEGG: Lbuc_0577 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 188 27 216 521 150 50.0 2e-35 AQTASAKSYAKVTSNKALTADATTRNVNVNGSNALYTKAGTLKGAKVVATKTTLNGVKDS KQGQKNWRVYRVATTNRGSVYYKVVSFDKTYRGWIYGGKSTSNFAGGIASYDTTSAASSA PASSATFTLKTPGTSSLAYNAPAWSQYKVGRATVDGKVVTTTTPYSGASFTVTKAVTTSR EGETWYQVSAAPASSASTSSANSSAASSASA Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:35 2011 Seq name: gi|238617779|gb|GG669642.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD39, whole genome shotgun sequence Length of sequence - 607 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 606 246 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|238617779|gb|GG669642.1| GENE 1 1 - 606 246 202 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 202 68 265 317 99 34 5e-22 AELAQTDAEYKRSRCGRKTKLSDELKQKILNHLRLSWSPGMIAHEFKLATKSIYNWLNQG RIGFSLNALPEHGVRQRRNVDQRSKYNQSLGRSIEQRPMMINQRKRIGDFELDTVVGPRG HSKAVLLTLIDRKSRFLWAYRLKDRTTATVNEALTKFLTTFNGPVHSFTVDRGTEFSGLV SLESQYGIKTYYCHAYTPAERG Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:36 2011 Seq name: gi|238617778|gb|GG669643.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD40, whole genome shotgun sequence Length of sequence - 601 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 568 262 ## LCAZH_p007 putative nickase Predicted protein(s) >gi|238617778|gb|GG669643.1| GENE 1 1 - 568 262 189 aa, chain - ## HITS:1 COG:no KEGG:LCAZH_p007 NR:ns ## KEGG: LCAZH_p007 # Name: not_defined # Def: putative nickase # Organism: L.casei_Zhang # Pathway: not_defined # 1 189 140 328 691 314 86.0 1e-84 MLTNRPFNPDGTWGIKSKKQYILDDNGNKTYTGTSKYPKSRKILMVDWDKKEKITEWRHN WAASVNQALEQKNIPDRISEKSFVEQGIADTPMQHEGINSKRHERKAFNQQVKKYRKTKA NYKNNQEKVVNRGHLDSLSKHFSFNEKKVVKELSHELKTYISLESLDDKRRMLFNWKNST LIKHAVGED Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:40 2011 Seq name: gi|238617777|gb|GG669644.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD41, whole genome shotgun sequence Length of sequence - 542 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 154 - 213 3.5 1 1 Tu 1 . + CDS 249 - 458 266 ## LCAZH_p006 hypothetical protein Predicted protein(s) >gi|238617777|gb|GG669644.1| GENE 1 249 - 458 266 69 aa, chain + ## HITS:1 COG:no KEGG:LCAZH_p006 NR:ns ## KEGG: LCAZH_p006 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_Zhang # Pathway: not_defined # 1 69 7 75 75 80 94.0 2e-14 MSQSNLEKQEAKLKALNQKIKDEKNKIEQRLGKQIISQANLDYANLSNDQIKLLAKQFSE FLKVKSVDH Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:42 2011 Seq name: gi|238617776|gb|GG669645.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD42, whole genome shotgun sequence Length of sequence - 502 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 501 217 ## COG0675 Transposase and inactivated derivatives Predicted protein(s) >gi|238617776|gb|GG669645.1| GENE 1 3 - 501 217 166 aa, chain - ## HITS:1 COG:all7245 KEGG:ns NR:ns ## COG: all7245 COG0675 # Protein_GI_number: 17233261 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Nostoc sp. PCC 7120 # 2 137 57 201 407 72 33.0 3e-13 LLKPLKQEYPFLKASDSTSLFVVNHNLALAFKNLFQQRGGHPQFKSRHSAKQAYTGQSTC VVEAKRRLRLPKLGSIRTSKTNQLADAKIKRYTISHDATGRYYLSLQVETEVHDLPKTHQ MVGLDMGVADLAIDSNGVKYGTFNAQWFEKQATLWQAKFSRRKRQA Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:43 2011 Seq name: gi|238617775|gb|GG669646.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD43, whole genome shotgun sequence Length of sequence - 499 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 494 222 ## COG4185 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|238617775|gb|GG669646.1| GENE 1 2 - 494 222 164 aa, chain - ## HITS:1 COG:CAC1491 KEGG:ns NR:ns ## COG: CAC1491 COG4185 # Protein_GI_number: 15894770 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 3 125 43 163 187 77 33.0 2e-14 MGGDWHKDSDNLKAMKEEIKQLHYALDHQQSIHVETTLAGRGKSQLNLIDKAHKNGFEVT LLYVALRDENLAIQRVNERVQKGGHGVPVATIKKRYQQSKHNLPLVAFKSDKVMIYDNSE KFTSVYAREKGQVFKNDLRHFPWINQNITYPEKVQKQLQNFADQ Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:43 2011 Seq name: gi|238617774|gb|GG669647.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD44, whole genome shotgun sequence Length of sequence - 489 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 489 121 ## COG0675 Transposase and inactivated derivatives Predicted protein(s) >gi|238617774|gb|GG669647.1| GENE 1 3 - 489 121 162 aa, chain - ## HITS:1 COG:all7245 KEGG:ns NR:ns ## COG: all7245 COG0675 # Protein_GI_number: 17233261 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Nostoc sp. PCC 7120 # 1 133 60 201 407 76 33.0 3e-14 VKQEYPFLKASDSTSLFVVNHNLALAFKNLFQHRGGHPRFKSRHSAKQAYTGKSICVVEA KRRLRLPKIGSIRTNKTNQLVDAKIKRYTVSHDATGRYYLSLQVETEVHDLPKTNQRVGL DMGVADLAITSNGVKYGTFNARWLEKQAKCWQAKFSRRKHQA Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:44 2011 Seq name: gi|238617773|gb|GG669648.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD45, whole genome shotgun sequence Length of sequence - 474 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:44 2011 Seq name: gi|238617772|gb|GG669649.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD46, whole genome shotgun sequence Length of sequence - 472 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:44 2011 Seq name: gi|238617771|gb|GG669650.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD47, whole genome shotgun sequence Length of sequence - 439 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 55 - 114 3.7 1 1 Tu 1 . + CDS 136 - 321 249 ## Lbuc_2444 hypothetical protein Predicted protein(s) >gi|238617771|gb|GG669650.1| GENE 1 136 - 321 249 61 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2444 NR:ns ## KEGG: Lbuc_2444 # Name: not_defined # Def: hypothetical protein # Organism: L.buchneri # Pathway: not_defined # 1 61 3 63 63 87 100.0 1e-16 MKDTITINDFFEIAKETDLKDLLDKSLHEPDPEKRKVYDALYTYFLDKRQDEVIKRKDFV R Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:47 2011 Seq name: gi|238617770|gb|GG669651.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD48, whole genome shotgun sequence Length of sequence - 437 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 316 139 ## LGG_00453 transposase IS150/IS3 family protein - Prom 368 - 427 3.2 Predicted protein(s) >gi|238617770|gb|GG669651.1| GENE 1 1 - 316 139 105 aa, chain - ## HITS:1 COG:no KEGG:LGG_00453 NR:ns ## KEGG: LGG_00453 # Name: is18 # Def: transposase IS150/IS3 family protein # Organism: L.rhamnosus # Pathway: not_defined # 64 105 121 162 263 89 95.0 6e-17 MIEVPTFVIITFAVIVILIAVAILVTVLRRTDQKIADKPATDLNSEQWLPDYSDSKVPAE KITLGYIQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMATDLVLKT Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:50 2011 Seq name: gi|238617769|gb|GG669652.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD49, whole genome shotgun sequence Length of sequence - 394 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 372 261 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member Predicted protein(s) >gi|238617769|gb|GG669652.1| GENE 1 3 - 372 261 123 aa, chain - ## HITS:1 COG:AGpT237 KEGG:ns NR:ns ## COG: AGpT237 COG0507 # Protein_GI_number: 16119945 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 120 18 148 1117 75 33.0 2e-14 MAIFHMSFSNISAGKGRSAIAGASYRSGEKLFDQKEGRSYFYARSVMPESFILTPKNAPE WASDREKLWNEVERKDRRANSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDEGMVAD VAI Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:50 2011 Seq name: gi|238617768|gb|GG669653.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD50, whole genome shotgun sequence Length of sequence - 370 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 15 - 368 186 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|238617768|gb|GG669653.1| GENE 1 15 - 368 186 117 aa, chain - ## HITS:1 COG:L0434 KEGG:ns NR:ns ## COG: L0434 COG2801 # Protein_GI_number: 15672639 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 3 110 172 278 279 101 49.0 4e-22 ESAVKNRTITGDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASL KKECVYPVPVFENYETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQVEIATLTSQMAA Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:51 2011 Seq name: gi|238617767|gb|GG669654.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD51, whole genome shotgun sequence Length of sequence - 359 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 233 188 ## COG0477 Permeases of the major facilitator superfamily - Prom 297 - 356 3.2 Predicted protein(s) >gi|238617767|gb|GG669654.1| GENE 1 2 - 233 188 77 aa, chain - ## HITS:1 COG:ECs4432 KEGG:ns NR:ns ## COG: ECs4432 COG0477 # Protein_GI_number: 15833686 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 58 101 158 400 68 58.0 3e-12 MLWLFGGVLLGAMNGVLYLTTLTNAIKWFPEKKGLISGISVASYGLGSFIFKYIDMAIAG GNGAITADNIGRVLLWW Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:51 2011 Seq name: gi|238617766|gb|GG669655.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD52, whole genome shotgun sequence Length of sequence - 354 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:52 2011 Seq name: gi|238617765|gb|GG669656.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD53, whole genome shotgun sequence Length of sequence - 338 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:52 2011 Seq name: gi|238617764|gb|GG669657.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD54, whole genome shotgun sequence Length of sequence - 336 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 276 290 ## COG3533 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|238617764|gb|GG669657.1| GENE 1 3 - 276 290 91 aa, chain - ## HITS:1 COG:ECs4459 KEGG:ns NR:ns ## COG: ECs4459 COG3533 # Protein_GI_number: 15833713 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 91 277 367 656 111 50.0 3e-25 MAYVARYTGDKDLLAACDRFWNDIVKRQMYITGNIGQTTTGEAFTYDYDLPNDTDYGETC ASVGMSFFARQMLNIHAKGEYADVLEKELFN Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:53 2011 Seq name: gi|238617763|gb|GG669658.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD55, whole genome shotgun sequence Length of sequence - 336 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 276 268 ## COG3533 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|238617763|gb|GG669658.1| GENE 1 3 - 276 268 91 aa, chain - ## HITS:1 COG:ECs4459 KEGG:ns NR:ns ## COG: ECs4459 COG3533 # Protein_GI_number: 15833713 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 91 277 367 656 111 50.0 3e-25 MAYVARYTGDKDLLAACDRFWNDIVKRQMYITGNIGQTTTGEAFTYDYDLPNDTDYGETC ASVGMSFFARQMLNIHAKGEYADVLEKELFN Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:53 2011 Seq name: gi|238617762|gb|GG669659.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD56, whole genome shotgun sequence Length of sequence - 312 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:53 2011 Seq name: gi|238617761|gb|GG669660.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD57, whole genome shotgun sequence Length of sequence - 312 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:54 2011 Seq name: gi|238617760|gb|GG669661.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD58, whole genome shotgun sequence Length of sequence - 307 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:54 2011 Seq name: gi|238617759|gb|GG669662.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD59, whole genome shotgun sequence Length of sequence - 296 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 290 148 ## COG0675 Transposase and inactivated derivatives Predicted protein(s) >gi|238617759|gb|GG669662.1| GENE 1 2 - 290 148 96 aa, chain - ## HITS:1 COG:alr1531 KEGG:ns NR:ns ## COG: alr1531 COG0675 # Protein_GI_number: 17229023 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Nostoc sp. PCC 7120 # 6 96 208 304 395 83 46.0 8e-17 MRQWNHHHKLSKMALNDYQNWQRAKITKARYQAKIANQRKDYLHKLTTDLVRNYDVIVIE DLKTKNLMRNHHLAKSIANASWYQFRTMLEYKCAWY Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:55 2011 Seq name: gi|238617758|gb|GG669663.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD60, whole genome shotgun sequence Length of sequence - 284 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 67 - 283 291 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs Predicted protein(s) >gi|238617758|gb|GG669663.1| GENE 1 67 - 283 291 72 aa, chain + ## HITS:1 COG:XF2028 KEGG:ns NR:ns ## COG: XF2028 COG1961 # Protein_GI_number: 15838622 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Xylella fastidiosa 9a5c # 4 72 3 73 185 69 53.0 2e-12 MAKIGYARVSSKEQHLDRQLAALKDVDKLFTDKLSGANTNRPELQKMLAYIREGDIVMVT ELDRLGRNNHDL Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:55 2011 Seq name: gi|238617757|gb|GG669664.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD61, whole genome shotgun sequence Length of sequence - 277 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 228 128 ## LPST_P0018 nickase Predicted protein(s) >gi|238617757|gb|GG669664.1| GENE 1 3 - 228 128 75 aa, chain - ## HITS:1 COG:no KEGG:LPST_P0018 NR:ns ## KEGG: LPST_P0018 # Name: not_defined # Def: nickase # Organism: L.plantarum_plantarum # Pathway: not_defined # 1 75 420 494 686 129 98.0 5e-29 MQQEKEVKIELKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKDLRTIMAVKQV IQTQYQEVLRRAFPN Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:40:58 2011 Seq name: gi|238617756|gb|GG669665.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD62, whole genome shotgun sequence Length of sequence - 264 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 217 59 ## LVIS_B18 hypothetical protein Predicted protein(s) >gi|238617756|gb|GG669665.1| GENE 1 2 - 217 59 71 aa, chain + ## HITS:1 COG:no KEGG:LVIS_B18 NR:ns ## KEGG: LVIS_B18 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 1 71 22 92 92 90 91.0 3e-17 EDFKLRQSKYYESRQDRKARSRRLIQKGALLEKYFQADNLSIEQTEELLKTFANYVNAHK PDKLKNDQPNN Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:00 2011 Seq name: gi|238617755|gb|GG669666.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD63, whole genome shotgun sequence Length of sequence - 257 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 54 - 176 69 ## Predicted protein(s) >gi|238617755|gb|GG669666.1| GENE 1 54 - 176 69 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLPQQFPRLRVLHRRGIRRSGGLYRHSHSGRQHGGLRSGG Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:05 2011 Seq name: gi|238617754|gb|GG669667.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD64, whole genome shotgun sequence Length of sequence - 253 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 35 - 251 259 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs Predicted protein(s) >gi|238617754|gb|GG669667.1| GENE 1 35 - 251 259 72 aa, chain + ## HITS:1 COG:XF2028 KEGG:ns NR:ns ## COG: XF2028 COG1961 # Protein_GI_number: 15838622 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Xylella fastidiosa 9a5c # 4 72 3 73 185 69 53.0 2e-12 MAKIGYARVSSKEQHLDRQLAALKDVDKLFTDKLSGANTNRPELQKMLAYIREGDIVLVT ELDRLGRNNQDL Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:06 2011 Seq name: gi|238617753|gb|GG669668.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD65, whole genome shotgun sequence Length of sequence - 242 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:06 2011 Seq name: gi|238617752|gb|GG669669.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD66, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:06 2011 Seq name: gi|238617751|gb|GG669670.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD67, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:07 2011 Seq name: gi|238617750|gb|GG669671.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD68, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:07 2011 Seq name: gi|238617749|gb|GG669672.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD69, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:08 2011 Seq name: gi|238617748|gb|GG669673.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD70, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 230 115 ## COG2132 Putative multicopper oxidases Predicted protein(s) >gi|238617748|gb|GG669673.1| GENE 1 2 - 230 115 76 aa, chain - ## HITS:1 COG:ECs0127 KEGG:ns NR:ns ## COG: ECs0127 COG2132 # Protein_GI_number: 15829381 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Escherichia coli O157:H7 # 1 76 171 246 516 166 100.0 1e-41 MLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGW LRLRLLNGCNARSLNF Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:08 2011 Seq name: gi|238617747|gb|GG669674.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD71, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 191 59 ## Predicted protein(s) >gi|238617747|gb|GG669674.1| GENE 1 2 - 191 59 63 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTGIRVGPGMVEHEFAVRIGFQVAGNGADQRPAFPQCEVPGLPAPVLAQAAMLFQAREEG VAD Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:14 2011 Seq name: gi|238617746|gb|GG669675.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD72, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:14 2011 Seq name: gi|238617745|gb|GG669676.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD73, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:14 2011 Seq name: gi|238617744|gb|GG669677.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD74, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:15 2011 Seq name: gi|238617743|gb|GG669678.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD75, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:15 2011 Seq name: gi|238617742|gb|GG669679.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD76, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:15 2011 Seq name: gi|238617741|gb|GG669680.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD77, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:16 2011 Seq name: gi|238617740|gb|GG669681.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD78, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:16 2011 Seq name: gi|238617739|gb|GG669682.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD79, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 239 164 ## Smal_2461 TonB-dependent siderophore receptor Predicted protein(s) >gi|238617739|gb|GG669682.1| GENE 1 2 - 239 164 79 aa, chain + ## HITS:1 COG:no KEGG:Smal_2461 NR:ns ## KEGG: Smal_2461 # Name: not_defined # Def: TonB-dependent siderophore receptor # Organism: S.maltophilia_R551-3 # Pathway: not_defined # 1 79 13 91 713 132 84.0 4e-30 LALALPLASLAQAADTSTTSPRDLDKVEVRGRAQTLYRVDDAAVGTRTDTPLELVPQSVQ VIPRELIDDQAARQVTDLY Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:19 2011 Seq name: gi|238617738|gb|GG669683.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD80, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 238 76 ## COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) Predicted protein(s) >gi|238617738|gb|GG669683.1| GENE 1 1 - 238 76 79 aa, chain - ## HITS:1 COG:ECs0653 KEGG:ns NR:ns ## COG: ECs0653 COG3697 # Protein_GI_number: 15829907 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) # Organism: Escherichia coli O157:H7 # 1 79 1 79 183 152 100.0 1e-37 MHLLPELASHHAVSIPELLVSRDERQARQHVWLKRHPVPLVSFTVVAPGPIKDSEVTRRI FNHGVTALRALAAKQGWQI Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:19 2011 Seq name: gi|238617737|gb|GG669684.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD81, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:19 2011 Seq name: gi|238617736|gb|GG669685.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD82, whole genome shotgun sequence Length of sequence - 240 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:20 2011 Seq name: gi|238617735|gb|GG669686.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD83, whole genome shotgun sequence Length of sequence - 238 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 237 172 ## LPST_P0018 nickase Predicted protein(s) >gi|238617735|gb|GG669686.1| GENE 1 3 - 237 172 78 aa, chain + ## HITS:1 COG:no KEGG:LPST_P0018 NR:ns ## KEGG: LPST_P0018 # Name: not_defined # Def: nickase # Organism: L.plantarum_plantarum # Pathway: not_defined # 1 77 325 401 686 127 97.0 1e-28 TKQLLTINQQESSLKKADELLNKVVDRTTKKLYPELDFEQITAAERRELIKETNSEQTIF KGSELNEHLMNIRDDLLT Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:22 2011 Seq name: gi|238617734|gb|GG669687.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD84, whole genome shotgun sequence Length of sequence - 237 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:23 2011 Seq name: gi|238617733|gb|GG669688.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD85, whole genome shotgun sequence Length of sequence - 237 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 43 - 119 93.5 # Ile GAT 0 0 + TRNA 145 - 217 82.7 # Ala TGC 0 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:23 2011 Seq name: gi|238617732|gb|GG669689.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD86, whole genome shotgun sequence Length of sequence - 237 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 4 - 186 191 ## COG3297 Type II secretory pathway, component PulL Predicted protein(s) >gi|238617732|gb|GG669689.1| GENE 1 4 - 186 191 60 aa, chain + ## HITS:1 COG:yghE KEGG:ns NR:ns ## COG: yghE COG3297 # Protein_GI_number: 16130869 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulL # Organism: Escherichia coli K12 # 1 51 36 86 286 98 96.0 3e-21 MACDAQRVICRIDECRGWSAGLALAPVMFRAQLNEQDLPLSLTVVGIATGKAISMGWRRR Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:24 2011 Seq name: gi|238617731|gb|GG669690.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD87, whole genome shotgun sequence Length of sequence - 237 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 23 - 236 77 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase Predicted protein(s) >gi|238617731|gb|GG669690.1| GENE 1 23 - 236 77 71 aa, chain + ## HITS:1 COG:ZfabB KEGG:ns NR:ns ## COG: ZfabB COG0304 # Protein_GI_number: 15802870 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Escherichia coli O157:H7 EDL933 # 5 71 136 202 406 140 100.0 5e-34 MWSPKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGE ELCWEMACEFD Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:24 2011 Seq name: gi|238617730|gb|GG669691.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD88, whole genome shotgun sequence Length of sequence - 236 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 133 68 ## gi|327195549|gb|AEA35163.1| tetracycline resistance protein class C Predicted protein(s) >gi|238617730|gb|GG669691.1| GENE 1 2 - 133 68 43 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|327195549|gb|AEA35163.1| ## NR: gi|327195549|gb|AEA35163.1| tetracycline resistance protein class C [uncultured bacterium] # 1 40 6 45 114 66 100.0 7e-10 NGEGHPASRRERQQDVAQRVGRHAGDNGLLLAETFGGGTSAKA Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:29 2011 Seq name: gi|238617729|gb|GG669692.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD89, whole genome shotgun sequence Length of sequence - 234 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 232 109 ## COG2005 N-terminal domain of molybdenum-binding protein Predicted protein(s) >gi|238617729|gb|GG669692.1| GENE 1 1 - 232 109 77 aa, chain + ## HITS:1 COG:ECs0789 KEGG:ns NR:ns ## COG: ECs0789 COG2005 # Protein_GI_number: 15830043 # Func_class: R General function prediction only # Function: N-terminal domain of molybdenum-binding protein # Organism: Escherichia coli O157:H7 # 4 77 76 149 262 140 100.0 6e-34 GGGAVLTRYGQRLIQLYDLLAQIQQKAFDVLSDDDALPLNSLLAAISRFSLQTSARNQWF GTITARDHDDVQQHVDV Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:30 2011 Seq name: gi|238617728|gb|GG669693.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD90, whole genome shotgun sequence Length of sequence - 234 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:30 2011 Seq name: gi|238617727|gb|GG669694.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD91, whole genome shotgun sequence Length of sequence - 231 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:31 2011 Seq name: gi|238617726|gb|GG669695.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD92, whole genome shotgun sequence Length of sequence - 231 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 190 152 ## COG1349 Transcriptional regulators of sugar metabolism Predicted protein(s) >gi|238617726|gb|GG669695.1| GENE 1 1 - 190 152 63 aa, chain - ## HITS:1 COG:glpR KEGG:ns NR:ns ## COG: glpR COG1349 # Protein_GI_number: 16131297 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli K12 # 1 63 1 63 252 121 100.0 3e-28 MKQTQRHNGIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNELAEQNLILRHHGGAALPS SSV Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:31 2011 Seq name: gi|238617725|gb|GG669696.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD93, whole genome shotgun sequence Length of sequence - 231 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:31 2011 Seq name: gi|238617724|gb|GG669697.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD94, whole genome shotgun sequence Length of sequence - 230 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:32 2011 Seq name: gi|238617723|gb|GG669698.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD95, whole genome shotgun sequence Length of sequence - 227 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 221 183 ## LAF_0674 hypothetical protein Predicted protein(s) >gi|238617723|gb|GG669698.1| GENE 1 2 - 221 183 73 aa, chain - ## HITS:1 COG:no KEGG:LAF_0674 NR:ns ## KEGG: LAF_0674 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 1 73 76 148 194 133 100.0 2e-30 MNSIQNKGATLDVLNLPSMTGIADPNLRQLMTNLIIELYKYQAESERKRIIERQQQGIAL AKQQGKYHGRKPQ Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:34 2011 Seq name: gi|238617722|gb|GG669699.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD96, whole genome shotgun sequence Length of sequence - 225 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:35 2011 Seq name: gi|238617721|gb|GG669700.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD97, whole genome shotgun sequence Length of sequence - 223 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:35 2011 Seq name: gi|238617720|gb|GG669701.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD98, whole genome shotgun sequence Length of sequence - 220 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 186 65 ## Predicted protein(s) >gi|238617720|gb|GG669701.1| GENE 1 3 - 186 65 61 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKFWPLTSGLFFSVRRVFPATPQTVRYQRLPFPADGVQTPRARLQNPLRAEFPAALHAAD Y Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:41 2011 Seq name: gi|238617719|gb|GG669702.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD99, whole genome shotgun sequence Length of sequence - 219 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 217 179 ## gi|227509345|ref|ZP_03939394.1| hypothetical protein HMPREF0496_1508 Predicted protein(s) >gi|238617719|gb|GG669702.1| GENE 1 1 - 217 179 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227509345|ref|ZP_03939394.1| ## NR: gi|227509345|ref|ZP_03939394.1| hypothetical protein HMPREF0496_1508 [Lactobacillus brevis subsp. gravesensis ATCC 27305] hypothetical protein HMPREF0496_1508 [Lactobacillus brevis subsp. gravesensis ATCC 27305] # 1 72 1 72 72 93 100.0 4e-18 ILEGGGDRVGAVGDLLGAGIDGRSDAAGMGVQRVAEHADAVLDAGIELGGAVVECALHGR SLLFEAESEAVR Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:47 2011 Seq name: gi|238617718|gb|GG669703.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD100, whole genome shotgun sequence Length of sequence - 219 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:47 2011 Seq name: gi|238617717|gb|GG669704.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD101, whole genome shotgun sequence Length of sequence - 216 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:48 2011 Seq name: gi|238617716|gb|GG669705.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD102, whole genome shotgun sequence Length of sequence - 212 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 209 64 ## COG1070 Sugar (pentulose and hexulose) kinases Predicted protein(s) >gi|238617716|gb|GG669705.1| GENE 1 2 - 209 64 69 aa, chain - ## HITS:1 COG:ECs4831 KEGG:ns NR:ns ## COG: ECs4831 COG1070 # Protein_GI_number: 15834085 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Escherichia coli O157:H7 # 1 69 345 413 489 144 98.0 4e-35 MCSEIQAACRETAQPIPESDAELARCIFDSLALLYADVSHELAQLRGEDFSQLHIVGGGC QNTLLNQLC Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:48 2011 Seq name: gi|238617715|gb|GG669706.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD103, whole genome shotgun sequence Length of sequence - 211 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:49 2011 Seq name: gi|238617714|gb|GG669707.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD104, whole genome shotgun sequence Length of sequence - 208 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:49 2011 Seq name: gi|238617713|gb|GG669708.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD105, whole genome shotgun sequence Length of sequence - 208 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 09:41:49 2011 Seq name: gi|238617712|gb|GG669709.1| Lactobacillus brevis subsp. gravesensis ATCC 27305 genomic scaffold SCAFFOLD106, whole genome shotgun sequence Length of sequence - 204 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 204 82 ## COG2207 AraC-type DNA-binding domain-containing proteins Predicted protein(s) >gi|238617712|gb|GG669709.1| GENE 1 3 - 204 82 67 aa, chain + ## HITS:1 COG:eutR KEGG:ns NR:ns ## COG: eutR COG2207 # Protein_GI_number: 16130362 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 67 69 135 350 149 100.0 9e-37 ILLDDIQVFREYTGLALRQSCLVWPNSFWFGIPATRGEQGFIGSQCLGSAEIATRPGGTE FELSTPD