Prediction of potential genes in microbial genomes Time: Wed May 25 05:02:44 2011 Seq name: gi|256541473|gb|ACPV01000001.1| Lactobacillus crispatus 125-2-CHN cont1.1, whole genome shotgun sequence Length of sequence - 21778 bp Number of predicted genes - 24, with homology - 24 Number of transcription units - 18, operones - 5 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 161 80 ## COG0209 Ribonucleotide reductase, alpha subunit + Term 207 - 261 1.1 - Term 195 - 248 4.7 2 2 Tu 1 . - CDS 307 - 591 218 ## LCRIS_00633 hypothetical protein - Prom 632 - 691 12.7 + Prom 596 - 655 8.5 3 3 Tu 1 . + CDS 685 - 1614 721 ## COG1073 Hydrolases of the alpha/beta superfamily - Term 2004 - 2038 5.3 4 4 Tu 1 . - CDS 2045 - 3433 1570 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase - Prom 3554 - 3613 7.0 5 5 Op 1 . + CDS 3558 - 4370 650 ## COG2137 Uncharacterized protein conserved in bacteria 6 5 Op 2 . + CDS 4379 - 4861 515 ## LCRIS_00637 hypothetical protein - Term 4814 - 4854 2.3 7 6 Tu 1 . - CDS 4862 - 5323 483 ## LCRIS_00638 hypothetical protein - Prom 5480 - 5539 9.3 + Prom 5333 - 5392 7.5 8 7 Op 1 . + CDS 5426 - 6292 1072 ## COG1253 Hemolysins and related proteins containing CBS domains 9 7 Op 2 . + CDS 6292 - 7863 1695 ## COG4108 Peptide chain release factor RF-3 + Term 7878 - 7914 0.4 - Term 7866 - 7902 4.2 10 8 Tu 1 . - CDS 7927 - 8208 413 ## LCRIS_00648 hypothetical protein - Prom 8242 - 8301 8.2 11 9 Tu 1 . - CDS 8354 - 10411 1638 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Prom 10625 - 10684 7.8 12 10 Tu 1 . + CDS 10751 - 10933 104 ## LCRIS_00650 hypothetical protein + Prom 10935 - 10994 7.0 13 11 Op 1 25/0.000 + CDS 11046 - 11312 452 ## COG1925 Phosphotransferase system, HPr-related proteins 14 11 Op 2 . + CDS 11312 - 13045 2269 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) + Term 13054 - 13097 2.5 + Prom 13078 - 13137 7.4 15 12 Tu 1 . + CDS 13269 - 13667 433 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Prom 13689 - 13748 7.3 16 13 Op 1 3/0.000 + CDS 13772 - 14518 653 ## COG4862 Negative regulator of genetic competence, sporulation and motility + Term 14536 - 14572 4.0 17 13 Op 2 . + CDS 14590 - 15438 593 ## COG4469 Competence protein + Term 15564 - 15617 -0.5 - Term 15235 - 15274 2.1 18 14 Tu 1 . - CDS 15446 - 16063 394 ## LCRIS_00656 dithiol-disulfide isomerase - Prom 16089 - 16148 10.4 - Term 16099 - 16143 0.1 19 15 Tu 1 . - CDS 16150 - 16758 602 ## LCRIS_00657 adenylate cyclase family + Prom 16749 - 16808 5.3 20 16 Op 1 6/0.000 + CDS 16835 - 17467 791 ## COG2357 Uncharacterized protein conserved in bacteria 21 16 Op 2 7/0.000 + CDS 17464 - 18267 769 ## COG0061 Predicted sugar kinase 22 16 Op 3 . + CDS 18260 - 19165 252 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit + Prom 19188 - 19247 7.4 23 17 Tu 1 . + CDS 19271 - 21046 1841 ## COG4716 Myosin-crossreactive antigen + Term 21056 - 21112 4.2 24 18 Tu 1 . - CDS 21081 - 21626 567 ## LCRIS_00662 putative protein without homology - Prom 21717 - 21776 3.2 Predicted protein(s) >gi|256541473|gb|ACPV01000001.1| GENE 1 3 - 161 80 52 aa, chain + ## HITS:1 COG:SPy0427 KEGG:ns NR:ns ## COG: SPy0427 COG0209 # Protein_GI_number: 15674554 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 1 52 669 726 726 66 56.0 1e-11 RDLNKAYIYAFKKRCNSIYYVRVREKVLAGSENLTADECLIQNGAECQKCMI >gi|256541473|gb|ACPV01000001.1| GENE 2 307 - 591 218 94 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00633 NR:ns ## KEGG: LCRIS_00633 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 94 1 94 94 159 100.0 2e-38 MRLTDLLQLIDDLNLNTKFYLKHDDKLLKWGKLTIAEGKCLLLPGQTAMTKQKLIKLVGR MRGRGIPLLMVIDQKEYSIFGLQIREDTGQAILM >gi|256541473|gb|ACPV01000001.1| GENE 3 685 - 1614 721 309 aa, chain + ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 19 303 23 305 308 222 42.0 7e-58 MKKKLLLSSALIAGAGLFAASEYFFKMAMTPFNKKADSKELSGKDPLYRDKVWFRDFSKK KWTLKTDSGITLFAQYLDQHAKKNAILLHGFMSDGDSMAGFAKMFYDFGYNVLVPDARAQ GRSEGKYIGYGWVEKDDILRCIYQVIDQTGTNAKIVIMGQSMGGATAMMVSGMLLPPQVK AFIEDCGYSTVKGEINYQAQNLFHMKSFPRFPIVDLVSGINRVKNGFYLKDASAVAQLNK NTRPFLFIHGGKDHFVPTKMVWQNYAATAAPKQIWLAPLAGHALSYPMYPKQYRQQVERF LQKYVGQFL >gi|256541473|gb|ACPV01000001.1| GENE 4 2045 - 3433 1570 462 aa, chain - ## HITS:1 COG:SP1901 KEGG:ns NR:ns ## COG: SP1901 COG2265 # Protein_GI_number: 15901728 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 23 457 1 433 436 347 42.0 2e-95 MNRKFTHNKPKHEKDVIITIKRLGINGEGIGYYKKKIIFIPGALPDEVVVAKIVKSYPHY IQGELVRIKEKSPDRVDFPEGVDPEIGGLELVHLSYDKQLEFKKNNMLESLRKYHPRNYN KYKVKNTIAAPDPWHYRNKAQYQIEKDHGQLKLGLFAPNSHRLIDLPKMPTQSEDTQKTE RKIKVLIEKLHVPVANYRRHLPGIKTVVVRQSEATKEIQVTLITIGHKIKNLIPLAKEIM KLDHVVSVYQNETEWQNPQVWGNKTEKLLGKNQITEEILGKKFALSPRAFFQLNPVQTIN LYSEALKYLDLTPDQTLIDAYSGVGTLGILAADRVKQVVGIETIPEAVKDAQHNVELNHI KNADYIQGSVEKILPELQNSGVAINALIVDPPRTGLAKSLIKTLLRVKPETFVYISCNPS TLAQDLVLLSEAYDVRVIQNVDMLPQTPRCEAIAKLVLRKDR >gi|256541473|gb|ACPV01000001.1| GENE 5 3558 - 4370 650 270 aa, chain + ## HITS:1 COG:BS_yfhG KEGG:ns NR:ns ## COG: BS_yfhG COG2137 # Protein_GI_number: 16077919 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 260 4 262 264 127 32.0 2e-29 MIITKVSAQKRPGRYNVFIDGKYAFSAGEKTLAEFVLLKGKELNDEQVEKIRQFDADAKA SDLAAHFLSYEPRTIFEVLQYLKKHEISDEAANSAVSQLNELGYLDDRQYAKLFIKNDLR VGSDGPKILLRKLTQKGVDPEISQDKLDEIDEEDWLEVGQRVIKSMSHQVGKISQRELER KMRTKLLTHGFDSGISNVIIDAMDLKEDENAQTEALKKQGIKAYKRFRNLPEIERNFKIK KYLFSHGFSSGEIDAFLNGEIIDLDELVEY >gi|256541473|gb|ACPV01000001.1| GENE 6 4379 - 4861 515 160 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00637 NR:ns ## KEGG: LCRIS_00637 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 160 1 160 160 290 100.0 1e-77 MKKNIESRLFIGRPFPAGLMNAQKSFMEANQQMENDETFQKFLADHNLENKRSVLVVSGE DSFMYWYGVLADVAKDEVPTGLMKFELPAAEVAEEVEENQTLVFFNLPLTSTVPNFAKKV VASGIEVHENLGDSDTPYITWDLDMDTKKLAQVMYLKASK >gi|256541473|gb|ACPV01000001.1| GENE 7 4862 - 5323 483 153 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00638 NR:ns ## KEGG: LCRIS_00638 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 153 1 153 153 247 100.0 1e-64 MKKSHVLLVFTFLLLIPYICSLAIIGIGYNALVLHSAELYRTLIGSLVGAIIMFAVKATI QRPVDLLAVQTNDGLLKQLLRFFSIRRRYWLLAANIILDFVLCFAATYIIRALLTLDQIV GSSIGFVLLIMFVSTCLGAYVEYDNLSIDPEQH >gi|256541473|gb|ACPV01000001.1| GENE 8 5426 - 6292 1072 288 aa, chain + ## HITS:1 COG:L64811 KEGG:ns NR:ns ## COG: L64811 COG1253 # Protein_GI_number: 15673796 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 26 285 184 444 449 212 43.0 6e-55 MNSDPGAGTLFGRLKNRLSGDKKVGTKDHLEKEIVTLHESHKIDDTEFSMLEGILDFQGK TAREVMVPRTDAFMVDREVSFQDNLDEILREPYSRIPVYQRDKDKIVGIIHIRTVLRKAK QKGFDNLDYKDVMTEPLFAPETAELGDLLMEMQQTQRQLAILTDEYGGVTGLATIEDLVE EIVGDIDDEVDHTEILFNQIAPNKYIIYGKMPLDNFNEQFGTNLQMEDVDTIAGYVINTL KVIPAKEEKLTVDIGDGMTLTTRRMKGSRLLTVLLTIDESKKEEDSED >gi|256541473|gb|ACPV01000001.1| GENE 9 6292 - 7863 1695 523 aa, chain + ## HITS:1 COG:L0369 KEGG:ns NR:ns ## COG: L0369 COG4108 # Protein_GI_number: 15672331 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Lactococcus lactis # 5 523 3 521 523 709 65.0 0 MDKELADKVKKRRTFAIISHPDAGKTTITEQMLLFGGVIRKAGTVKARKTGNFATSDWME IEKKRGISVTSSVMQFEYQGKRINILDTPGHQDFSEDTYRTLMAVDSAVMVIDSAKGIEP QTKKLFKVVKQRGIPIFTFMNKLDRDGRPPLDLIAELEDLLGIEGVAMDWPIGSGQTLKG LYDIANNRVELYRKNDQDRFLPLDQDGKLPDSEPLSQDPQFQDTLDEIDLIKEAGNKFDR EKIAMGDQTPVFFGSALTNFGVETFLNSFVDLAPAPESHTVNGDEELSPEDPEFSGFVFK IQANMNPHHRDRIAFVRVGSGEFKKGLDVTLARTDKPIRLNNATEFMSSERVQVSDAVAG DIVGLYDTGNFQIGDSIYAGKRKIVYPPLPEFTPELFMRVTAKNVMKQKSFHKGMNQLVQ EGAIQLYRNYQTDEYILGAVGQLQFEVFQFRMKNEYNSEVEMNSIGHRVARWIDPEQLDP RMSNTRNLLVKDRYGNPLFLFENEFAERFFHDKYPDVELTEKL >gi|256541473|gb|ACPV01000001.1| GENE 10 7927 - 8208 413 93 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00648 NR:ns ## KEGG: LCRIS_00648 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 93 1 93 93 140 98.0 1e-32 MHLIDVTNNYSDLVHSQLNTTDANYVKVYSLGNTSVIYTESKDSIGIVLENHDRRVREDE IEFVIKRLIKDYDSSYTLTVDKSRHVIEIHVDK >gi|256541473|gb|ACPV01000001.1| GENE 11 8354 - 10411 1638 685 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 17 678 141 809 815 635 49 0.0 MNNNEFFGDFDDLFNALNGNNNNAANNNNEMRNNDPRMQMGGGAGNGGQNGRSLLDQYGT DLTALAKKGKIDPVIGRDKEIARVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQEIVDG SVPAKLQNKRIISLNVVSLVQGTGIRGQFEQRMEQLIKELQQNDDIILFIDEIHEIVGAG NAEGGMDAGNIIKPALARGELQLVGATTIKEYRDIEKDSALARRFQPVEVKEPSIDETIR ILKGIQKRYEDYHHVHYTDEAIEAAAKLSARYIQDRFLPDKAIDLLDEAGSRMNLTIPYI DKDKMQERINAAEQLKEEALKNEDYEKAAYYRDQIEKYEKVKDQKVDPDKSPVITDKIMD KIVEEKTGIPVGDIQKQEENQLQNLAADLKAHVIGQDKAVEKVARAIRRNRIGFNKSGRP IGSFLFVGPTGVGKTELAKQLAKQMFGSEDAMIRFDMSEYMEQYSVSKLIGSAPGYVGYE EAGQLTEQVRHNPYSLILLDEIEKAHPDVLNLFLQILDDGRLTDSQGRTVSFKDTIIIMT SNAGQGIKNASVGFTAENEDEANESARNNMSQFFKPEFLNRLDDVIEFNELTKPDLLKIV DLMLQNTNNMVKDQGLHIDVTAAAKDKLVEDGFNPALGARPLRRTIQEEIEDNVADFKLD HAQAKNLKADVVDGKIVISDEANNE >gi|256541473|gb|ACPV01000001.1| GENE 12 10751 - 10933 104 60 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00650 NR:ns ## KEGG: LCRIS_00650 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 60 1 60 60 103 100.0 2e-21 MDYQKILDQLVSGEIKEYKVEPKDAFDLQKTIRNYGKRQYITGRAERGGAIVYTATNTDE >gi|256541473|gb|ACPV01000001.1| GENE 13 11046 - 11312 452 88 aa, chain + ## HITS:1 COG:L120335 KEGG:ns NR:ns ## COG: L120335 COG1925 # Protein_GI_number: 15672099 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Lactococcus lactis # 1 88 1 88 88 115 73.0 1e-26 MEKRDFHIIAETGIHARPATLLVQAASKFGSDVNLEYNGKSVNLKSIMGVMSLGVGQNAD VTITAEGDDEKDALDAIADTMKKEGLAE >gi|256541473|gb|ACPV01000001.1| GENE 14 11312 - 13045 2269 577 aa, chain + ## HITS:1 COG:SP1176 KEGG:ns NR:ns ## COG: SP1176 COG1080 # Protein_GI_number: 15901041 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Streptococcus pneumoniae TIGR4 # 1 563 1 565 577 707 63.0 0 MTKTLKGIAASDGIAIAPAYLLVEPDLSFSKSSIADVEAEVARYNDAIKTSTAEVEKIHD IAKESLGDEEAQVFEAHLMILNDPEFTGAIENEIKDSKINAEAALDETAKKFIAIFEGMT DNPYMQERAADVRDVSKRIMAHLLGKELPNPASIDHEVIVVAHDLTPSDTAQLNKKYVKG FVTDIGGRTAHSAIMARSLELPAVVGTDSITKDVKNGDMLIADGLDGDAIIDPSDAQVAD YKQKSEAFLKQKAEWAKLKNEPSVTADGKKFIIAANIGTPNDMPGVKDNGAEAIGLYRTE FLYMDSSDFPTEEAQFDAYKEVIEGMNGKQTIIRTCDIGGDKHLDYWDLPEEMNPFLGVR AIRLSMQYKDIFRTQLRALLRASAYGPLGIMFPMIGTLAELREAKQILAEEKDKLAKEGV KIGDDLQVGMMIEVPAAAVLADQFAKEVDFFSIGTNDLIQYTMAADRGNDNVSYLYQPYN PSVLRLIKHTIDGAHENGIWCGMCGEAAGDNTMFPILLSMGLDEYSMSATSILRIRSLMK KLNTADIKELANEACYVSETAEDNEKLVNNLMKKLNK >gi|256541473|gb|ACPV01000001.1| GENE 15 13269 - 13667 433 132 aa, chain + ## HITS:1 COG:lin2295 KEGG:ns NR:ns ## COG: lin2295 COG1393 # Protein_GI_number: 16801359 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 131 1 131 131 176 70.0 1e-44 MVDLYVSPSCTSCRKARAWLEKHNIPFKERNIFSEPLTKKELLKILRMTENGTEEIISTR SRAFQQLRINLDDLSIDQLLDLVEKNPSLLRRPIIMDDRRLQVGYNEDEIRRFLPRKVRR LELAEAQKIADL >gi|256541473|gb|ACPV01000001.1| GENE 16 13772 - 14518 653 248 aa, chain + ## HITS:1 COG:SA0857 KEGG:ns NR:ns ## COG: SA0857 COG4862 # Protein_GI_number: 15926587 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms; N Cell motility # Function: Negative regulator of genetic competence, sporulation and motility # Organism: Staphylococcus aureus N315 # 1 242 1 234 239 68 22.0 9e-12 MQVDHIDKNTIRVRIDKAELARRGMGMLDLLGNRQKIQDFFYKILDEVDEDHEFANGDPV SFQVMPNNGGLDLMITKVKPDDAQNLRKLMGDSFPKDEQSSTNSDDSKSFFDLDEESTNS NSAPQGPATHNFFNQDDKNNEPTDWRSRKTQAYYFDDLGSLIELADNLKANDLASSLYYL HGQYFLNLAFLDEEYEELKPADAWTIANEFGFKVDSDKMRVVEETGKCLLMQNALGQIRH YFLKAANY >gi|256541473|gb|ACPV01000001.1| GENE 17 14590 - 15438 593 282 aa, chain + ## HITS:1 COG:SP0978 KEGG:ns NR:ns ## COG: SP0978 COG4469 # Protein_GI_number: 15900855 # Func_class: R General function prediction only # Function: Competence protein # Organism: Streptococcus pneumoniae TIGR4 # 19 252 11 249 317 84 28.0 3e-16 MYAAMLNKKLVLAVDEACLVNARQKKLNRDNYHCPHCNKKVILVMSEQKAAFFKHLVKYS NLMGEKEEHHQSKMLLKSALTAAGFPAEVEIPLAEGQLRADVLATAKLAFEVQCAPLIQQ EFNHRHQLYQKIGVKDIWIVGQRHYLKRRLKRTQLIFFRQNKAWGNYYLEINPQRNRFCL KYNVLEEPVANKLVYQSKSFVLDELGIKDFWRFKPFKKEYSLNIATQRKYLRQQIMQKTK LGLKIGEMLYERKLTLDDLPDKVFATWRNPGERDRVSDFLQK >gi|256541473|gb|ACPV01000001.1| GENE 18 15446 - 16063 394 205 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00656 NR:ns ## KEGG: LCRIS_00656 # Name: not_defined # Def: dithiol-disulfide isomerase # Organism: L.crispatus # Pathway: not_defined # 1 205 1 205 205 398 99.0 1e-110 MFEIFLFINPIGIYCYDTEKQIRKTVDELGVDVCYHYIPIANVCLINDDAIRRRKDDQKL PDISNFSRATYEALENYHAIRLAYGNKKARQYLYELQKNLSKDASAYTPELLKRIANKLH IKDADIQAIKQTDYLRTSIEEDQKLANQWNIKATPTTVIFNEDNEQNGVLLEGPINQQDL VNLMLPDCQKCFSDYLPAEHHLRLI >gi|256541473|gb|ACPV01000001.1| GENE 19 16150 - 16758 602 202 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00657 NR:ns ## KEGG: LCRIS_00657 # Name: not_defined # Def: adenylate cyclase family # Organism: L.crispatus # Pathway: not_defined # 1 202 1 202 202 358 99.0 5e-98 MSKNREIEAKILLNKSVYDQITAAFPIKSDFTQENYYFDTADDLLKNHQISLRIRIYATH AEQTMKVPDPNPVQKNFHEVIEINDKLTHAQAKKLVAKKHFKFTGNIGAYLDNHFANDQK KLHLFTWSKTRRILMNGPQNCELTLDATSYPDNYQDFELEIENTNPALIQTVLTKLEQEY DFEQTAANTNQSKIARASAHQK >gi|256541473|gb|ACPV01000001.1| GENE 20 16835 - 17467 791 210 aa, chain + ## HITS:1 COG:SP1097 KEGG:ns NR:ns ## COG: SP1097 COG2357 # Protein_GI_number: 15900965 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 201 1 201 223 236 57.0 2e-62 MELDWDNFLWPYNEAVRELKVKFRSLRQGFLTKGEHSPIEFVIGRVKTVDSIKEKMKRRV ISPDVIETDMQDIAGIRIVTQFVDDIYKVVDLIHARDDMEVVEERDYIQNAKPSGYRSYH MVINYTVYLPEGPKKLIAEVQIRTMAMNFWATVEHTLNYKYQGVYPDDISARLKSTAEAA YRLDEEMSSIKDEVQEAQKIFTKNKGKEKL >gi|256541473|gb|ACPV01000001.1| GENE 21 17464 - 18267 769 267 aa, chain + ## HITS:1 COG:SP1098 KEGG:ns NR:ns ## COG: SP1098 COG0061 # Protein_GI_number: 15900966 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Streptococcus pneumoniae TIGR4 # 2 262 7 269 272 261 47.0 1e-69 MKVTIAHNNYDETLKTVAQLKKLLQEKGFIFDARYPDVVITVGGDGTLINAFHRYENQVD SVRFIGIHTGHLGFYTDWRNYDIEKMVDALAVTKGEPAKYPLLEIKMLTESGETHYHLAV NESAVKRVSHTLEADVYINDQLFENFRGDGLCVSTPTGSTAYGKSLGGAVIHPRLKALQM TEIASINNRVFRTLSSPIVIAPDQWISIVPNADHFVMTVDGARIDVRNAKKIEYRISRHS IQFDQFGHHHFWSRVQNAFIGDNEKND >gi|256541473|gb|ACPV01000001.1| GENE 22 18260 - 19165 252 301 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 14 277 10 273 285 101 31 4e-21 MTSLFKLIVQERDPKKLGPFLLKNGFSHQALNNAKHHHGMILVNHKRRYTSFNLRAGDEV IFISGEEKKNDFLKPSNNPVSIVLENKNYLVVNKPAGVLSIPSRYEDDDAVVNRLLGYFA QKGQKNLKPHVITRLDRYTSGLVLVGKNAISHARFSKIGKEKFVKKYHAIVHGNFAPNEL TGLIDQPIGKKGSGVKRAVVADGKDAQTAYRVLDQVTGASLVELCLLTGRTHQIRVHMAY LGHPLYGDPLYGIQDGFSRQALNCFYLNFPDPFSQQKCKTIELNDPKDMQELWQKLINKE F >gi|256541473|gb|ACPV01000001.1| GENE 23 19271 - 21046 1841 591 aa, chain + ## HITS:1 COG:SPy0470 KEGG:ns NR:ns ## COG: SPy0470 COG4716 # Protein_GI_number: 15674587 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Streptococcus pyogenes M1 GAS # 1 591 1 590 590 877 68.0 0 MYYSNGNYEAFADAKKPAGVDKKSAYIIGSGLAGLSAAVFLVRDAQMKGENIHILEELPV AGGSLDGAKRPNAGFVVRGGREMENHFECLWDMYRSIPSLEIPGASYLDEYYWLDKEDPN SSNCRLIYNRGDRLPSDGQYGLGKCANEIVKLIMTPEKELQGETIEEFFSDDFFKTNFWT YWATMFAFEKWHSAAEMRRYAMRFIHHIDGLPDFTALKFNKYNQYESMVKPLLAYLKDHG VQFEYDCHVDNVVVDHEGKQKVAKKIVMTKNGEQSDIDLTPDDIVFVTNGSITESSTYGD QNTPAPITHDKGSSWKLWENLAKQDPDFGHPDVFCENLPERSWFVSATATLENKKIAPYF ERLTKRSLYDGKVNTGGIITVVDSNWELSFTIHRQPHFKSQNPDQIVVWIYALYSDTEGN YIKKRVVDCTGKEIAEEMLYHLGVPESQISELASEENMNTVPVYMPYITSYFMPRHDGDR PDVVPEGSVNIAFIGNFAESPTRDTVFTTEYSVRTAMEAVYTLLNVDRGVPEVFDSIYDI RQLLRAMYYMSDKKKLVDQEMPLPEKLALKTGMKKIKRTWVEELLEEANLV >gi|256541473|gb|ACPV01000001.1| GENE 24 21081 - 21626 567 181 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00662 NR:ns ## KEGG: LCRIS_00662 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 181 1 181 181 305 98.0 6e-82 MVRSHGIEDLAFLFLLNAICVAIPGLSNGIFCVLNGILYGPAWGFIVNWISDILGQIILM ELLQKLYDMKKMSNSKVYKLLTGLKSPMLGLIIGYMIPFIPSATVSYVNIMINKEQRKKQ LIPIIIGVIPFAYLYAYGGDSILHLDGTRLIKVVISFVVIALIAVAILLSLRAIKKRTKK A Prediction of potential genes in microbial genomes Time: Wed May 25 05:03:17 2011 Seq name: gi|256541472|gb|ACPV01000002.1| Lactobacillus crispatus 125-2-CHN cont1.2, whole genome shotgun sequence Length of sequence - 38029 bp Number of predicted genes - 33, with homology - 33 Number of transcription units - 12, operones - 7 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 40 - 77 2.1 1 1 Tu 1 . - CDS 98 - 1126 1109 ## COG2706 3-carboxymuconate cyclase - Prom 1163 - 1222 9.2 + Prom 1115 - 1174 7.2 2 2 Op 1 . + CDS 1306 - 1686 599 ## LCRIS_00664 PTS system, glucitol/sorbitol-specific IIA component 3 2 Op 2 . + CDS 1703 - 2890 1088 ## COG0628 Predicted permease + Term 2899 - 2939 2.2 4 3 Op 1 . + CDS 2953 - 3513 687 ## COG0219 Predicted rRNA methylase (SpoU class) 5 3 Op 2 . + CDS 3513 - 3908 503 ## LCRIS_00667 hypothetical protein 6 3 Op 3 . + CDS 3921 - 6344 2189 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 7 3 Op 4 14/0.000 + CDS 6331 - 7545 995 ## COG0612 Predicted Zn-dependent peptidases 8 3 Op 5 4/0.000 + CDS 7542 - 8786 863 ## COG0612 Predicted Zn-dependent peptidases 9 3 Op 6 1/0.667 + CDS 8800 - 9528 714 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 10 3 Op 7 5/0.000 + CDS 9596 - 10675 918 ## COG1426 Uncharacterized protein conserved in bacteria 11 3 Op 8 1/0.667 + CDS 10693 - 11253 317 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase + Term 11273 - 11316 3.5 + Prom 11270 - 11329 11.4 12 4 Op 1 4/0.000 + CDS 11446 - 12546 1603 ## COG0468 RecA/RadA recombinase + Term 12552 - 12598 -0.4 + Prom 12569 - 12628 7.6 13 4 Op 2 . + CDS 12662 - 14299 1895 ## COG1418 Predicted HD superfamily hydrolase + Term 14301 - 14350 7.2 + Prom 14319 - 14378 6.8 14 5 Tu 1 . + CDS 14403 - 15560 1075 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase + Term 15568 - 15601 4.0 - Term 15554 - 15591 5.7 15 6 Tu 1 . - CDS 15595 - 16257 636 ## COG1739 Uncharacterized conserved protein + Prom 16178 - 16237 4.7 16 7 Op 1 6/0.000 + CDS 16303 - 17583 884 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) 17 7 Op 2 6/0.000 + CDS 17580 - 18275 498 ## COG1040 Predicted amidophosphoribosyltransferases 18 7 Op 3 7/0.000 + CDS 18356 - 18901 811 ## PROTEIN SUPPORTED gi|116513711|ref|YP_812617.1| ribosome-associated protein Y (PSrp-1) + Term 18928 - 18968 5.6 + Prom 18947 - 19006 6.3 19 8 Op 1 6/0.000 + CDS 19043 - 21442 3040 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) + Term 21453 - 21483 1.1 + Prom 21456 - 21515 6.1 20 8 Op 2 . + CDS 21625 - 22623 868 ## COG1186 Protein chain release factor B 21 8 Op 3 . + CDS 22632 - 22904 251 ## LCRIS_00684 putative protein without homology 22 8 Op 4 10/0.000 + CDS 22919 - 23887 976 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism 23 8 Op 5 . + CDS 23880 - 24719 688 ## COG0682 Prolipoprotein diacylglyceryltransferase 24 8 Op 6 . + CDS 24760 - 25779 1522 ## COG0240 Glycerol-3-phosphate dehydrogenase 25 8 Op 7 1/0.667 + CDS 25861 - 26799 584 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 + Term 26821 - 26857 4.1 + Prom 26836 - 26895 7.5 26 9 Tu 1 . + CDS 26966 - 28690 2216 ## COG1109 Phosphomannomutase + Term 28751 - 28784 1.0 + Prom 28711 - 28770 2.2 27 10 Op 1 7/0.000 + CDS 28793 - 30838 1841 ## COG0556 Helicase subunit of the DNA excision repair complex 28 10 Op 2 . + CDS 30828 - 33668 2710 ## COG0178 Excinuclease ATPase subunit 29 10 Op 3 . + CDS 33741 - 34283 655 ## LCRIS_00692 hypothetical protein + Prom 34297 - 34356 7.8 30 11 Op 1 12/0.000 + CDS 34377 - 35258 1008 ## COG1660 Predicted P-loop-containing kinase 31 11 Op 2 12/0.000 + CDS 35299 - 36312 731 ## COG0391 Uncharacterized conserved protein 32 11 Op 3 . + CDS 36305 - 37240 702 ## COG1481 Uncharacterized protein conserved in bacteria + Term 37247 - 37285 3.8 - Term 37235 - 37273 7.6 33 12 Tu 1 . - CDS 37305 - 37889 827 ## COG0740 Protease subunit of ATP-dependent Clp proteases - Prom 37940 - 37999 4.1 Predicted protein(s) >gi|256541472|gb|ACPV01000002.1| GENE 1 98 - 1126 1109 342 aa, chain - ## HITS:1 COG:L11851 KEGG:ns NR:ns ## COG: L11851 COG2706 # Protein_GI_number: 15674136 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Lactococcus lactis # 2 339 4 339 341 241 40.0 1e-63 MKVLIGGYTKKTSKGIYELPITGAANDARLGKAENIISVGGPTYFRKDGNLIFTVNNAGD KGGISVFQLSDQGANEVDHYLTPGSSPAYVGINRTKKLIYIANYHTAVLSVFRYNDSGKL DLVDTVTHKAETLGPRPEQVDGPHPHFFDETPAGNLVSCDLGNDTVDFYRLENDQLKHIA QYKCETGFGTRHIVFSKDGNYFYVVGELSSQINVVKFNEDTWDFENIATYKTIPADFTDH NGAAALYISQDGKYVYTSNRGHNSIAVFKVNDDHTLSLVQRVSTFGDFPRDFNWDKDQRY VVVANQNTDNATLYTRNAGTGSLTPIQKEISVPEGTRVLFTK >gi|256541472|gb|ACPV01000002.1| GENE 2 1306 - 1686 599 126 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00664 NR:ns ## KEGG: LCRIS_00664 # Name: srlB # Def: PTS system, glucitol/sorbitol-specific IIA component # Organism: L.crispatus # Pathway: Fructose and mannose metabolism [PATH:lcr00051]; Phosphotransferase system (PTS) [PATH:lcr02060] # 1 126 1 126 126 238 98.0 4e-62 MKWIANIKKIGKKAVDNKDGMVILFGEGANKDLEDVSVIQKFSTETPVSGFVFKKGDTIT VDGQTYVANYVGPMVESNMKALGHATLFFNRTVSKTPLANAIYFDPDIDQPLPNFKVDDD IVYEHI >gi|256541472|gb|ACPV01000002.1| GENE 3 1703 - 2890 1088 395 aa, chain + ## HITS:1 COG:SPy1011 KEGG:ns NR:ns ## COG: SPy1011 COG0628 # Protein_GI_number: 15675014 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Streptococcus pyogenes M1 GAS # 5 382 7 383 393 250 36.0 3e-66 MENNQHRGGTVFKKWFLDNRFSIVLLNVLLFFLIIWVFNKVSFVLNPAWIFFSAILPPLL LAVIQYYIMNPVVDWCERKFKIPRVVTIIVLFLLVVVALIWIINILVPIAQNQINSLIKN WPHIWNDAVNATQNALQDPRLHSFKGSIKGMIDNTQKTLFKSGQSTINATIGNISSAVSI ITMVAMTLLTAPFILFFMLKDGHQLRPYITKFAPEKWQPSFSKLLYDINYAVASYVRGQI TVAFWVGVMFSLGYILIGLPYGVALAILAGFMNLIPYFGTPLAMIPVIVISIMTSGSMLI KVLIVFAIEQTIESRILSPWVMGNKMEMHPITTILLLIGASAVWGLWGVVFGIPIYAILK IIVSRVYNYYRRESKLFEENAVSSTTGDADHDESE >gi|256541472|gb|ACPV01000002.1| GENE 4 2953 - 3513 687 186 aa, chain + ## HITS:1 COG:L161988 KEGG:ns NR:ns ## COG: L161988 COG0219 # Protein_GI_number: 15673131 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Lactococcus lactis # 3 169 2 169 169 192 54.0 3e-49 MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDVRR HDDLNAFLKTLGPNDEMYLISKFSSKNYAQVDYTDPNKNYYFVFGKETTGLPETFMREYY DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMETTHHYENDKLKDDYDRPERYER NLGENK >gi|256541472|gb|ACPV01000002.1| GENE 5 3513 - 3908 503 131 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00667 NR:ns ## KEGG: LCRIS_00667 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 131 1 131 131 244 100.0 1e-63 MDFEKQTDIIVQAFHYDLVDEDTKPISDVRPGIRKLDVSGDDEHSEENGSYYDVAIQYDV IPAPAMFEASGLIHQIVQLKDYHGDGSDISNSDWQLLTRPLVEQLETLIYETTQLTLGQP VNLNFKAEFDN >gi|256541472|gb|ACPV01000002.1| GENE 6 3921 - 6344 2189 807 aa, chain + ## HITS:1 COG:lin1423 KEGG:ns NR:ns ## COG: lin1423 COG1674 # Protein_GI_number: 16800491 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Listeria innocua # 29 795 30 759 762 597 46.0 1e-170 MPAKKKQRKAKKSYNKRKANKKQNLNWSICGLVLILIAGLAFVRFGILGKQIANLIRMFF GDSYLLAAGLLGLFGLVNLIYNQPIHLTIKRSLGLAIAFLGILLIQCNLYFEHELVNSNF LNSFWHAMAAEFGRAGVTESIGGGLIGSLAYQLFYPLLGQIGVRVFAILLLPIGILMFFD VKFRTIIEKFQTVSQLFIKKNKEAGVKVKDKYNDVLEKRRQKKEEQDEDLVDDDKPIFPN VADFDPADPTDDDVTPTAEDVEVEPETTPDPEPQIQIAPQHDDGVKELPKSHSFAEDDQK LKQELADVDHGELKTDAPVNKAYKMPPLSLLDPIKSTDQSTDRDLIKKNTQVLQSTFKSF GVKVIIKKAILGPTITRYEVQPAVGVKVSRIVNLADDLALALAAKDIRIEAPIPGKPFIG IEVPNRATSVVSFKDVMEHQDNKAKSDPMDVPLGKDVTGSIISANLAKMPHLLIAGSTGS GKSVAINTILASILMKARPEEVKLVLIDPKMVELSVYNGVPHLLIPVVTDAKLAANALRK VVKEMERRYKLFAAGGVRNMSEYNQKVAENNRDKTKPVMKPLPYILVVVDELSDLMMVGG HDVEGAIVRLGQMARAAGIHMILATQRPSVDVITGLIKANVPSRISFAVSSGVDSRTILD QTGAEKLLGRGDMLYMPIGASKPERVQGAYIASDEVERVIEWVKKQQEVSYDETMIPKKG ENSSNADSKDDEPADEFYEQAVDLVRRQQTASVSMLQRRFRIGYNRAARIVDEMEAKGIV GPSEGSKPRQVLVPPIKNEGNSNNAHN >gi|256541472|gb|ACPV01000002.1| GENE 7 6331 - 7545 995 404 aa, chain + ## HITS:1 COG:BH2393 KEGG:ns NR:ns ## COG: BH2393 COG0612 # Protein_GI_number: 15614956 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Bacillus halodurans # 5 347 15 367 431 82 22.0 1e-15 MLTTNIAIRKNKKFTTAAIGCFLRLPLTKHNLAYASLLARIQMNSSLSYPSLALQQKRLA ELYDLQLEIMPQVFGKEILLTYYANFVEPIEILDPHYTYEEILNVIAQIVNQPNFAEPLV EYAKRQLAEEYQELIEQPSNYALEQFFKLWYQDQPDYAETFIGSLDEIKAATSTTMMHYW RNLANVPMQILGMTRDNNLVSKLAQAMFQQTGLTKSFQTASLTIPAKRKLIEKEDDQGNV QAQLLMGFGLEQSIDYRGQVMGILLSQYLAGDQSSKLFTQIREQLGAAYNVEASCFANNS LFLVSAGLDPSKIAAARKIILSEMGKLVQGEVEDDLFKKAKKAILRNMKIGLDGQNWQMG QMLRDELFSGYLDFDRENAIRRATPKQLVAFVQNLFFNESYVLK >gi|256541472|gb|ACPV01000002.1| GENE 8 7542 - 8786 863 414 aa, chain + ## HITS:1 COG:L31393 KEGG:ns NR:ns ## COG: L31393 COG0612 # Protein_GI_number: 15673954 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Lactococcus lactis # 26 406 15 405 410 142 29.0 9e-34 MMTPKIIKKEYQSGFKAEIILKPHFYQRFFGIIVDFGSSDPQKVAGSAHFLEHKLFAKKD GDLSTQFEDIGADVNAFTSFNETMFYCSGIEHTPKMIDLLFELVGQPYFTKENIAQEAPI IEQELAMYQDDPTWSVNNAIMHDMFGDSNLGIEVVGTKESINQVTVKNLTQVYEAKYVPE KMQFVACGDFSDNQVQTILRQVGKLQQKYLHGKGKSTAEKQVSFRMLHNQVLPARGNSNS FGLGIRFKNFKKVLSSFDLTQILLEIMLESKLSAMGPWFEEMRKKQLLMDSLQISVNYTR QGDFATIFGVSPQAQEVIAEIKRVLTEPIKKNSAEYRFIRQNFILQKKEWLARTARTSND LSYLAIELIEENLDHENLAQNIAKLQAMNFDQFYDYCQKIMKDSELCSAYLENK >gi|256541472|gb|ACPV01000002.1| GENE 9 8800 - 9528 714 242 aa, chain + ## HITS:1 COG:lin1431 KEGG:ns NR:ns ## COG: lin1431 COG1028 # Protein_GI_number: 16800499 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Listeria innocua # 1 242 5 243 243 184 39.0 2e-46 MKRAIVFGATGGIGQDICRDLADAGWSLYLHYHSNSQKAENLVQELFAKHPDQDFMSLQL DFATGDAQLTDFVKNLLPVNAVVFAQGITKYGFLGDEKLANITDLININLTVPIKLTKLL EPQLMKRDFSRIVYLGSVYGGAGSALESVYSATKGGITRFAQAYAREVASNNLTVNVIAP GAVKTKMNAFFSEDTIQEVKDEIPVGRWANGSDISYWVRTLLDRRSSYLTGQTIYVTGGW LL >gi|256541472|gb|ACPV01000002.1| GENE 10 9596 - 10675 918 359 aa, chain + ## HITS:1 COG:lin1432 KEGG:ns NR:ns ## COG: lin1432 COG1426 # Protein_GI_number: 16800500 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 282 1 310 311 91 28.0 3e-18 MADIGDKLKSAREAKGLSIADIEKATKIQSRYLEAIEKNEFDKLPGDFYVRAFIRQYAQV VGLDGKELLSDYHDDVPEAKPDEYVENSIDNKSEEVRETTDNKKNLWKNYLPRIAIGLGV IIVILVVYVLYARLSSGGQKNQADNNDVTVSSQKSSSSSSKKAKKVVVNKVKVTKVSDNE YRVTGLNKNRRLVVRAGENQNISAGVQVNGNANSWQSTLLANQKHTMTLPSNAERVVITL GNDNGTSITIAGKKIPYTANNAYRTITLLIGKAKGTTSQNNSSSNNTGSTNNNTTNSSST QSRTTTQSSATRQSSRQQSSTTTQSSQQTQQSSQTQQSSTTQSSADTNNGNDGGNNNNN >gi|256541472|gb|ACPV01000002.1| GENE 11 10693 - 11253 317 186 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 174 484 661 904 126 41 2e-28 MNLPNKLTVFRIFLIPVFMLIIIFGGNASVQAAGSTVVWSRVIAAIVFAVASATDWFDGH IARSRNMVTNFGKFADPLADKMLTMTAFIFLVELKLAPAWVVAIIVCRELAVTGLRLILA ENEGQVLAAKMPGKIKTTCQMLSIIFLLIGDFFHIGTILLYLALIFTIYSGYDYFHQSWG VFKGSM >gi|256541472|gb|ACPV01000002.1| GENE 12 11446 - 12546 1603 366 aa, chain + ## HITS:1 COG:lin1435 KEGG:ns NR:ns ## COG: lin1435 COG0468 # Protein_GI_number: 16800503 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Listeria innocua # 4 330 2 328 348 476 76.0 1e-134 MAKDEKQAALDAALKKIEKNFGKGAVMRMGEKADTQISTVPTGSLALDAAIGVGGYPRGR IIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPN TGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG NISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVLGN RVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQ GRENAKKYLEEHPDIYQDIQKQVRQAYGIDEKSIADREDPEKIKEKREEAKTEKEAATDK KSEQAK >gi|256541472|gb|ACPV01000002.1| GENE 13 12662 - 14299 1895 545 aa, chain + ## HITS:1 COG:lin1436 KEGG:ns NR:ns ## COG: lin1436 COG1418 # Protein_GI_number: 16800504 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Listeria innocua # 5 545 1 520 520 476 55.0 1e-134 MNNMLTIMIPVATAIVSFLVGSVVGYAIRKHSWEQKAQNAQNDADHILADAKAQVAAAQA EVNAQKQAAAAVKQSAENTKKEKILEAQEQIRDFRQKTEDELNSKKDNLAREKNRLQQRE DTLDHKNSLLDERESGLTQKEDQLKQQYASLKAKLTEAEELVETRRQKLYDVAKLDEEEA KKIVLSQLSDELVKERAEMIRNSNEEVKAKADHYANQVIVDAIQSSAADTVAETTVSVVD LPNEEMKGRIIGREGRNIRSFEALTGIDLIIDDTPKVVTLSGFDPIRREIAKRAMERLIK DGRIHPARIEEMVDKARKEVNDDIYEAGESALMELGIHRMNPELVKTLGRLKYRTSYGQN VLSHSIEVGKLAGTMAAELGLDEKLAVRAGLLHDIGKAIDHDIEGSHVEIGVELTRKYHE PDVVVNAIAAHHGDVPKLSFIAELVVAADTISSARPGARSESLENYIRRLTELEKIAKSY QGVKQAYAIQAGREVRVMVEPDEISDDRTVILARDIRNQVEKELDYPGNIKITVIREKRV VAIAK >gi|256541472|gb|ACPV01000002.1| GENE 14 14403 - 15560 1075 385 aa, chain + ## HITS:1 COG:L35751 KEGG:ns NR:ns ## COG: L35751 COG0472 # Protein_GI_number: 15673776 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Lactococcus lactis # 2 360 12 395 443 333 46.0 3e-91 MFKIIVELFLLVIISAAITPFIRRLAFVLGAVDNPNARRVNKKPMPTIGGLGIFVTFNIG TFVLLREQFPTHEIFSILLASSVIVLTGLIDDILELKPRQKMFGIFIASLIIYFLAGIRM NVLKVPFIAHEVNLGWWSFPITIFWILALTNAVNLIDGLDGLADGVSMISLTTMGIVGYF FLHTHQLYVPIACFMLAACLLGFLPYNFHPAKIFLGDTGALYIGFMIAVLSLKGLKNVTF ISLLVPIIILGVPITDTVYAMIRRKLNKKPISEADKHHLHHQLMRMGLTHRQTVLTIYAL SLVFSFISLLFLLSPTWGTWLLILGLLIALEYFVESIGLLGEKYHPLMHVIQKIINQKSK TDPTIEVWHLGDEKPDQLKSKKNNK >gi|256541472|gb|ACPV01000002.1| GENE 15 15595 - 16257 636 220 aa, chain - ## HITS:1 COG:lin2660 KEGG:ns NR:ns ## COG: lin2660 COG1739 # Protein_GI_number: 16801721 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 5 209 3 207 211 167 43.0 1e-41 MSEKENFLTIKENGTGELIIKKSRFIANIARTTTTDAANDFIQKISKKYRDASHNTFAYT IGLNDDQVKESDNGEPSGTAGVPELKALQLMNLKNVTVVVTRYFGGIKLGAGGLIRAYSN SVTNVVEKVGVIKRVLQQELIFSVPYNRFDEVDHYLKQQKIFIANTEYGVDVKIHIFVND DQQAKPKEDLTNLLAGQVTFTNGEKRYNEIPVEANNYHEQ >gi|256541472|gb|ACPV01000002.1| GENE 16 16303 - 17583 884 426 aa, chain + ## HITS:1 COG:SP2208 KEGG:ns NR:ns ## COG: SP2208 COG4098 # Protein_GI_number: 15902015 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Streptococcus pneumoniae TIGR4 # 27 426 27 428 432 306 42.0 5e-83 MEDLTLLSGRQWIVSQEDSSTFEGCRKIPVIEKGKCNRCGSQVNSRLPNGKYYCRGCIGL GRANEGDWLIRKDSNNTFSHVKNGGLSWQGKLTPLQQNISDKLVQNFEQRKNTLVHAVTG AGKTEMLFQLIARCMKKGQRACIATPRIDVVNELFPRFSAAFAQVEIGKYHGREFKEIGL EQLTICTTHQLMKFYRAFDLLVIDEVDSFPYVGNPQLHFAAKNAVKTTGTRMYLTATPTN DLLLEAKTGKLEILRLNRRFHGGLLPVPRERLFIRPFLRKGQIHPKLMQEIKKVIQSGHP LLLFVPRIEEIPLYQEALRKKLQNKIKLAGVHAQDPQRLEKVQAFRDRKYDLLLTTTILE RGVTFKNVWVIIIAADDAIYTAASLVQIAGRVGRAHDDQTGLVLYCYHRYTKNIRQSIKQ IKGMNR >gi|256541472|gb|ACPV01000002.1| GENE 17 17580 - 18275 498 231 aa, chain + ## HITS:1 COG:L0319 KEGG:ns NR:ns ## COG: L0319 COG1040 # Protein_GI_number: 15673071 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Lactococcus lactis # 1 230 1 215 216 109 33.0 3e-24 MRTCLLCEQEFTPPVQFAQLFSFKTARKSKICLQCLKQFEKLADNRCSGCDKELGQGFMC SDCRNWQAIYGENILHNHALYRYNSAFHDLMVAYKRRGDYVLREVLQDLCYDYLCKTNYD FYVPVPTSPEHQSRRQFDTIFAIYADILPLTPLLIKQSGSHAQGEKNKEERLKTPQSFLI DKNIKIKENIVSGKVLILDDIYTTGRTLYHARDRLQQGFPEMKIESFSICH >gi|256541472|gb|ACPV01000002.1| GENE 18 18356 - 18901 811 181 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116513711|ref|YP_812617.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] # 1 181 1 185 185 317 85 9e-86 MLKYNVRGENIEVTDALRSYVEKRLNKLEKYFELNQDVIAHVNLRVYRDHSAKVEVTIPL PYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSREKGLQDFFVEQPEEEEKKP SEFDIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFEDAETNGTSVVYRRNDGRYGLIETN E >gi|256541472|gb|ACPV01000002.1| GENE 19 19043 - 21442 3040 799 aa, chain + ## HITS:1 COG:SPy1805 KEGG:ns NR:ns ## COG: SPy1805 COG0653 # Protein_GI_number: 15675639 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Streptococcus pyogenes M1 GAS # 1 795 1 783 839 1014 66.0 0 MANILKKLYNDDKRELKKFEKIADKVEAHADEMSKLSDEQLQAKTPEFRDRLKKGESLDD LLPEAFAVAREGAKRVLGLYPFHVQILGGIALHYGNIAEMMTGEGKTLTATMPVYLNALE GKGVHVVTVNEYLSSRDEEEMGQLYKWLGLTVGLNLNSMSPDEKRAAYNCDVTYSTNSEL GFDYLRDNMVVYKEQMVQRPLNYAIIDEVDSILIDEARTPLIISGEAEQANSDYIRADRF VKTLTEDKSDDDADDDEDHGDYKIDWPTKTISLTRTGIEKACQHFGLKNLYDVENQKLVH HIDQALRANYIMLKDIDYVVQDGEVLIVDSFTGRVMEGRRYSDGLHQAIEAKEGVKIQEE SRTQATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMQVITIPTNRPIARKDMPDILY PTLDSKFHAVVEEIKKRHANGQPVLVGTVAIESSERLSKMLDKAGIPHAVLNAKNHAKEA QIIMNAGQRGAVTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGR QGDPGYTRFYLSLEDDLMKRFGGDRVKDFLDRLSDNDDDKVIESRLITRQVESAQKRVEG NNYDTRKQTLQYDDVMRIQREIIYGERMQVIEADKSLKNVLIPMIHRTIDHQVAMFTQGE RKEWRLDSLRDFISSSLTSDKVTDSIDFKTISVEDLKKKLYDIVEQNFEDKEKALGDPSQ MLEFEKVVILRVVDDRWTDHIDAMDQLRQSIGLRGYGQLNPLVEYQDSGYRMFEEMISNI EFDVTRLFMKAEIRQNLSR >gi|256541472|gb|ACPV01000002.1| GENE 20 21625 - 22623 868 332 aa, chain + ## HITS:1 COG:BS_prfB KEGG:ns NR:ns ## COG: BS_prfB COG1186 # Protein_GI_number: 16080582 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Bacillus subtilis # 1 327 40 366 366 375 58.0 1e-104 MAQPDFWNNQEKAQKLISETNRLKEKRDSFLKLQTSYEDETTAVELLREEPDPDLQKEVE ADLATLQEDFHNYELDLLLSGKYDSHNALMEIHPGAGGTEAMDWGQMLLRMYQRYCDTAG FKFEINDYEPGEEAGLKSVSARIVGKNAYGMLKSENGVHRLVRISPFDAAKRRHTSFASV EVIPEVDDSIQIDIDPKDLRVDVYRSSGAGGQHINKTSSAVRITHLPTGIVTTSQAQRSQ LQNRETAMNELRAKLFHLEEEKKRKQKQALKGDQKEIGWGSQIRSYVFHPYNLVKDLRTG HETADAQGVMDGKLQPFIYSYLQWLLSQENPD >gi|256541472|gb|ACPV01000002.1| GENE 21 22632 - 22904 251 90 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00684 NR:ns ## KEGG: LCRIS_00684 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 90 1 90 90 153 98.0 2e-36 MSLMEIVTLVLVALIILSLLFVLFKAFILLLPVAVIAILIIWLIYRFTGRKNQDNMPSSG SYREWFKATSTSGPRPRKKARNVTTKDIDK >gi|256541472|gb|ACPV01000002.1| GENE 22 22919 - 23887 976 322 aa, chain + ## HITS:1 COG:lin2626 KEGG:ns NR:ns ## COG: lin2626 COG1493 # Protein_GI_number: 16801688 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Listeria innocua # 29 311 26 308 312 318 53.0 1e-86 MADEVRLSKLIQDNQSILEVYQGQEYIKDEEIYVSDIYRPGLELTGYFDFYPAQRIQLLG RTEISYAARLDHDIRMHVFNKMCTKATPCFLISRSLPVPEELTTAAEEHKIPILRTREST TYISSILTEYLRARLAKRTSIHGVLVEIKGMGVLLTGASGVGKSETALGLVQREHRLIAD DRVDAFQKDHNTVVGEAPKILKHLMEIRGIGIIDVMNLFGAGAVKNRTEIQLVINLVNWD PKANYDRLGFQENTREICNVPIPQVNIPVKVGRNIEIIIEVAAMNFRAKKMGYDATQTFD NNLTSLISEHSKEDTNKVPHND >gi|256541472|gb|ACPV01000002.1| GENE 23 23880 - 24719 688 279 aa, chain + ## HITS:1 COG:lin2625 KEGG:ns NR:ns ## COG: lin2625 COG0682 # Protein_GI_number: 16801687 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Listeria innocua # 6 268 8 267 277 258 51.0 1e-68 MTNLVINPVAFHLGNLSVKWYGIIMAVAIMLACWMAINEGKKRQIIPDDFVDLLLWAVPL GYVGARIYYVIFEWGYYSQHPEQIIAIWNGGIAIYGGLIAGLIVLLIFCYKRMLPPFLML DIIAPGVMAAQILGRWGNFVNQEAHGAPTTLHFLQSLHLPQFIIEQMKIGGTYYQPTFLY ESFFNLIGLILILSLRHKKHLFKQGEVFMTYLLWYSVVRFFVEGMRTDSLYIFGIIRVSQ ALSLILFIATIILWIYRRKVVNPKWYLDGSGLKYPYSRD >gi|256541472|gb|ACPV01000002.1| GENE 24 24760 - 25779 1522 339 aa, chain + ## HITS:1 COG:SPy0226 KEGG:ns NR:ns ## COG: SPy0226 COG0240 # Protein_GI_number: 15674414 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 3 336 5 334 338 333 52.0 4e-91 MTKIAVLGNGSWGSVLGSMLADNGNDVTLYGNIDSVNEEINAHHTNSHYMKDWKLNENTK ATGDLEAALDGAELVLFVLPTKAVRIVAKNVRKVLDKTGAKPLLVTATKGIEPGSKKLIS EILTEEIYPDDEDKIVAISGPSHAENVAQKDLTAIACASTNEENAKRVQELFSNDYVRFY TNDDLVGVEVGGAVKNVIAIAAGILVGQGYGDDAKAALMTRGLAEITRLGVQYFGAKPMT FSGLSGIGDLIVTCTSVNSRNWRAGKQIGEGKTLDYVLKNMGQVVEGATTVKAVHELCEE KGIDMPISEAIYRVLYEDADVDTEIKKMMGREPKPEIRL >gi|256541472|gb|ACPV01000002.1| GENE 25 25861 - 26799 584 312 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 5 307 2 306 306 229 41 2e-59 MADKYDVIIIGAGPGGMTAGLYAARANLKILVLDRGPYGGQMNNTDAIDNYPGFSEIKGP ELSQKMYDTMMKFEPDYKYGNVQSVELDGEDKLVKTDDGNEYRAPIVIIATGSDHKHLNV PGEEEYSGKGVSYCAVCDAAFFKDEDVAVIGGGDSAIEEGIYLSQLAKSVTVIHRRDQLR AQPTLQKRAFANKKMHFIWNAQTEEILGDDMKVTGVKYRDKETGAEKEIPVAGVFIYVGV LPQTEPFKDLGILDDHGWIVTDDHMETKVPGIFALGDVRQKDLRQIANAVGEGSVAGQAA YNYYQDLQDKKN >gi|256541472|gb|ACPV01000002.1| GENE 26 26966 - 28690 2216 574 aa, chain + ## HITS:1 COG:SP1498 KEGG:ns NR:ns ## COG: SP1498 COG1109 # Protein_GI_number: 15901345 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pneumoniae TIGR4 # 1 550 1 548 572 514 48.0 1e-145 MDAKEIYTEWQKATNLPDYLKDQLNTLGKDEKWIEDAFGQDINFGTAGMRGRLEPGTNRI NLFTVGRVTEGLARLIEENGADAKKRGVAISFDSRYHSREFAEHAARFLGAHGIHVYLFD DLRPTPELSYAVRHLHTFAGINITASHNAKQYNGYKVYGEDGAQMAPDNADRLFAYAQKV TDIFAVKAAPVKELRANGTLQLIGEDVDEDYLNELKQVTVDPEMVKANADKLKIIYTPLH GTGKMLYDRAFRQGGFDNVIPVPSQSIIDPEFPTTIKPNPEYRDVFEPGFKLANKVNANV IIATDPDADRMGAAVRKTDGDFQVLTGNQIATLMAYYLLAHMKENGQLIPDYEIVTSVVS SALPFKIAEDFGIKTKHVLTGFKYIGEEVDRMNKAGDAKFLMGFEESYGYLFKPFARDKD AMQGALMFAEVASYYASRGMTVFDGLQEIWQKYGVAYEITRAIEMPGIGGQKKMAELMSK LRNEHLTEIGGSKVLKIQDFLQKETIENGKKTPLEGFPESNVLKYFLDDETWVALRPSGT EPVIKAYVGVNKKDIATAEKAAEDYQKALADLLK >gi|256541472|gb|ACPV01000002.1| GENE 27 28793 - 30838 1841 681 aa, chain + ## HITS:1 COG:SP1238 KEGG:ns NR:ns ## COG: SP1238 COG0556 # Protein_GI_number: 15901100 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Streptococcus pneumoniae TIGR4 # 1 664 1 659 662 899 67.0 0 MIKRQKNRKFELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIAK LNKPTLVITHNKTLVGQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAI NDEIDQLRHATTSALMERNDVVVVASVSCIYGLGDPKEYARSVLMIHEGEEYDRNTLLRD LVNIQYDRNDIDFQRGRFRVRGDVVEVFPAGNSNHAYRIEFFGDEIDRIVEVDSLTGEVI GERESISLFPATHFMTNDEQLRRALGAISKEMKLQVKKFEGEGKLLEAERIKQRTTYDME MMGEVGYTNGIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDR NRKQTLIDYGFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERTDHKVEQIIRPT GLLDPKIEVRPIEGQIDDLVGEINKRIDRHERVFVTTLTKKMAEDLTDYLKDLGIKVRYL HSDIKTLERMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLV QTMGRAARNANGEVIMYADTITDSMRAAIKATKRRRKIQMEFNKEHGITPKTIIKPIQDV ISITKPSSEKEEKSDSFADLNFDELTAKQKKTMISNLQEQMQEAAKKLDFEEAANLRDAI MELQKSSRKPKTRKGKNFNGK >gi|256541472|gb|ACPV01000002.1| GENE 28 30828 - 33668 2710 946 aa, chain + ## HITS:1 COG:SPy1825 KEGG:ns NR:ns ## COG: SPy1825 COG0178 # Protein_GI_number: 15675653 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Streptococcus pyogenes M1 GAS # 4 936 3 942 942 1328 70.0 0 MANDKIVIRGAREHNLKDINLTIPKDKLVVITGLSGSGKSSLAFDTLYAEGRRRYVQSLS SYARQFLGQMDKPDVDSIDGLNPAISIDQKTTSHNPRSTVGTVTEINDYLRLLWARVGHP ICPNDGTLIQRQSVDQMVDRVMALPERTKIQILAPVIRAKRGEHKEVFKRVQRAGYVRVI VDGEMHEIGEDFELAKNKRHSIDIVVDRLIVKDSIKSRLFDSVEAALRLSDGYMNVDVIG GEMLNFSEYYACPKCGFTVGEMEPRLFSFNAPFGACPDCDGLGMKLAVDEDLVVPDKTKS LAEGALAPWKTSNYYTEMLEQACTALKIPMDKPFNKLTKRQRDIILHGSTKPVKFHVTGD FGVNDTVQPFEGVMANVERRYKRPMSKFMRDVMGKYMTELTCSTCHGKRLNEKALAVKVM GKDIAEASELSIDKALDFFKDVKLSEQETMIAKPILKEVRDRLSFLDSVGLDYLTLSRSA NTLSGGEAQRIRLATQIGSNLSGVMYVLDEPSIGLHQRDNDRLIASLKRMRDLGNSLIVV EHDDETMRQADYLVDMGPGAGVYGGKVMAQGTPKEVEQNPDSLTGQYLSGKKFVPVPLKR RKGNGKKITITGAQENNLKNINVDFPLGKFIVVSGVSGSGKSTLVNMILKRALAQKLNNN STKPGKYKSIKGYKNIEKIIDIDQSPIGRTPRSNPATYTSVFDDIRTLFAQTNEAKLRGY TKARFSFNVKGGRCEACHGDGIIKIEMNFLPDVYVPCEVCHGTRYNSETLEVTYRGKNIA QVLDMTINEATKFFENIPKIQRKLQTIVDVGLGYVKLGQSATTLSGGEAQRMKLAAELQK LSTGKNFYILDEPTTGLHTDDIKRLLEVLQRLVDEGNTVLIIEHNLDVIKNADWLIDLGP EGGERGGQIVATGTPEEVAKVKESYTGQYLKPVLERDTKLTKEAKK >gi|256541472|gb|ACPV01000002.1| GENE 29 33741 - 34283 655 180 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00692 NR:ns ## KEGG: LCRIS_00692 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 180 1 180 180 238 100.0 8e-62 MDIFSSSRDNRGFDWGAFIAGILMVVVAFVLLRHPAKGLHAFVLIFAIVSIVQGIVWLAA YSRFREFFSRSWVAIVSGVLDIIIGILFICSYDIGGLTIAYLFAIWFFVDSVVGIAWSWH LRAFSTGYFVFNLILNILSLIIAFFLIINPVIAALSLVWLVAFWLLVFGINEIVVAFMHR >gi|256541472|gb|ACPV01000002.1| GENE 30 34377 - 35258 1008 293 aa, chain + ## HITS:1 COG:SPy0652 KEGG:ns NR:ns ## COG: SPy0652 COG1660 # Protein_GI_number: 15674720 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Streptococcus pyogenes M1 GAS # 1 289 1 288 296 310 52.0 3e-84 MADEKKQLLIVTGMSGAGKTVVAHDLEDMGYFVVDNLPPTLLGSFWDLINNSNDFHKVAV VIDLRVKTFYRDLLDEVNSLEDNGNVQATILFLDASDDVLVARYKETRRLPPLANNGKGR LLDGIQEERRILMPIKNRSNYIIDTSNLSTKELKQKLINTFSDRKRQPFSIEVMSFGFKY GMPIDADIVMDVRFLPNPFYISELRPFTGLDKRVFDYVMNKEETQVFYKKLLDLLETVIP GYIKEGKEKLTIAIGCTGGQHRSVSIAQQLARDLAKKYQVDITHREVSRYIRK >gi|256541472|gb|ACPV01000002.1| GENE 31 35299 - 36312 731 337 aa, chain + ## HITS:1 COG:L189428 KEGG:ns NR:ns ## COG: L189428 COG0391 # Protein_GI_number: 15672944 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 7 323 4 320 327 333 50.0 3e-91 MIKGRRPRVVVIGGGTGLPVILNALKDQNAEITAIVTVSDDGGSSGSIRNFINVVPPGDI RNVLVSLSDLPQEEKNIFQYRFDSSDSFFSGHAIGNLIIAALNEMHGNIFDAVQSLSKMM KIDGHVFPASNEPLTLNAEFVDGTTESGETEITSKDKRIKRVWVTDTDSDEEPRAVLPVL ASIMQADAVVLGPGSLFTSILPNLMISNLGEAVRETDAEVIYICNIMTQRGETDHFSDAE HVQVINDHLGGNYINTALVNGAKIDMSKFHPEDYDAYLEPVKNDFEGLRKQNCRVITDDF IDQRHGLVFHDGEKVGKEIINLAFESMSRKRMKENDG >gi|256541472|gb|ACPV01000002.1| GENE 32 36305 - 37240 702 311 aa, chain + ## HITS:1 COG:lin2615 KEGG:ns NR:ns ## COG: lin2615 COG1481 # Protein_GI_number: 16801677 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 3 310 2 308 323 315 53.0 6e-86 MASYASEVKKELTSLEVHPEHAKAELAAFLRMNGVLNLHDHQFSLDITTENPAIARRIFK LIKIAYGIEPLLIVSRKMKLKKNNQYLVRLNQKVQEILENLQIWDPEKGLVTRIPQRIMT SREGAMSYLRGAFLAGGSVNNPETSRYHLEIYSTYEDHNEDLCKLMNNYFYLNAKATKRR RGYIVYLKEAAKIGDFLHIVGALNAMLNFEDLRIMRDMRNSVNRLVNCDTANMKKTASAS AKQVEDIQLIEQENGLDDLPEKLQVLARFRLAHPELTLKEVANQIPDGPISKSGVNHRFK KLHELAESLRE >gi|256541472|gb|ACPV01000002.1| GENE 33 37305 - 37889 827 194 aa, chain - ## HITS:1 COG:SA0723 KEGG:ns NR:ns ## COG: SA0723 COG0740 # Protein_GI_number: 15926445 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Staphylococcus aureus N315 # 2 194 3 195 195 270 73.0 9e-73 MLVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDIS LYINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVL IHQPLGGAQGQQTDIQIAANEILKSRKKINEILHETTGQPLEKIQKDTERDNYLTAEEAK EYGLIDEIMVNKKK Prediction of potential genes in microbial genomes Time: Wed May 25 05:03:35 2011 Seq name: gi|256541471|gb|ACPV01000003.1| Lactobacillus crispatus 125-2-CHN cont1.3, whole genome shotgun sequence Length of sequence - 18182 bp Number of predicted genes - 18, with homology - 18 Number of transcription units - 10, operones - 5 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 46 - 1674 1729 ## LCRIS_00697 conserved protein with bacterial Ig-like domain + Term 1697 - 1744 10.6 + Prom 1698 - 1757 10.7 2 2 Op 1 4/0.000 + CDS 1783 - 2421 199 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 3 2 Op 2 . + CDS 2418 - 3176 474 ## COG0390 ABC-type uncharacterized transport system, permease component + Term 3361 - 3400 7.6 - Term 3346 - 3391 11.4 4 3 Op 1 . - CDS 3423 - 3983 402 ## LCRIS_00700 uncharacterized conserved secreted or membrane protein 5 3 Op 2 . - CDS 3984 - 5456 1543 ## COG0477 Permeases of the major facilitator superfamily - Prom 5487 - 5546 10.6 + Prom 5537 - 5596 9.3 6 4 Tu 1 . + CDS 5617 - 6054 484 ## LCRIS_00702 transcriptional regulator, MerR family + Term 6115 - 6160 2.3 + Prom 6094 - 6153 3.5 7 5 Op 1 45/0.000 + CDS 6176 - 7030 314 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 8 5 Op 2 . + CDS 7030 - 7884 607 ## COG0842 ABC-type multidrug transport system, permease component 9 5 Op 3 . + CDS 7888 - 8340 249 ## LBA0248 hypothetical protein 10 5 Op 4 . + CDS 8342 - 8746 230 ## LGAS_0980 hypothetical protein + Term 8781 - 8825 -0.9 11 5 Op 5 . + CDS 8833 - 9618 661 ## LCRIS_00703 putative protein without homology + Term 9629 - 9680 11.3 - Term 9616 - 9667 9.2 12 6 Tu 1 . - CDS 9685 - 11118 1700 ## COG0531 Amino acid transporters - Prom 11153 - 11212 8.3 + Prom 11199 - 11258 9.6 13 7 Tu 1 . + CDS 11287 - 12819 1837 ## LCRIS_00705 conserved protein with bacterial Ig-like domain + Term 12837 - 12866 1.4 - TRNA 12914 - 12985 40.8 # Arg CCG 0 0 + Prom 13013 - 13072 8.2 14 8 Op 1 5/0.000 + CDS 13233 - 14264 1037 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain 15 8 Op 2 26/0.000 + CDS 14317 - 15333 1393 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase + Term 15381 - 15419 7.1 + Prom 15343 - 15402 2.8 16 9 Op 1 13/0.000 + CDS 15448 - 16659 1843 ## COG0126 3-phosphoglycerate kinase 17 9 Op 2 . + CDS 16684 - 17442 1031 ## COG0149 Triosephosphate isomerase + Term 17483 - 17518 3.5 + Prom 17590 - 17649 9.4 18 10 Tu 1 . + CDS 17727 - 18180 245 ## Ldb1782 transposase Predicted protein(s) >gi|256541471|gb|ACPV01000003.1| GENE 1 46 - 1674 1729 542 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00697 NR:ns ## KEGG: LCRIS_00697 # Name: not_defined # Def: conserved protein with bacterial Ig-like domain # Organism: L.crispatus # Pathway: not_defined # 1 542 1 542 542 978 100.0 0 MKYSNKILTATSAVALGVGLLIGSTNAVFADNSKTTDSNTDTAKTDSSAKKGPAQTSTSY DLMVKVGSNKNYPVYKKISNGKPSGKIADASDYQYAHIQSDQRIKTKDATYWRIYVNGRK VGYVNQNYFTRDAIAVPKTISLVQNSHYDFDPTDAVSYVTNYMGTVIDTADIKISEDAID CSTPGTYNVKYSYGKAKATVKVTVRKSTKEGIADADSVQAKPFNGDLKSWKTYYGSSANY VTKTDFTPDKNKHAYDSESGKLDFTTRFFQPVLLSVYRDIKNDDYINRVGHIPEGITMSN GWLYTSLLSSTLISNGHIVGYNLNHLTNAFNGQYLLDMSQKKFNSYVKNIKVSPYIPIGH GQAMGSTDKYIYVLNNNNKVSYKSNMSEELIQIRKSDMCINKIWTIKCWNGSDSDGRYFN NGVVVNDHKLYTTLYNKEKDQTEYWEFNRKGDNWYPTMVGATKGGIVANTYTQGFTYDAK NNNFYLAFNDVIAKIATDGEVKDTYQYHTGREIEGIATYNNKLYMNLAQRAELLESKQKL TK >gi|256541471|gb|ACPV01000003.1| GENE 2 1783 - 2421 199 212 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 19 211 21 215 305 81 27 4e-15 MKILELKHIQYSADKKQILQDVSFKVNKGDFLTLIGPSGAGKSTILRLIANLISANSGDI LYQEKNISSLNPVQYRREVSYCFQQPSLFGQTVRDNLIFPYEIRKVDVNDKQIADLLNQV DLSADFLDKKITALSGGEKQRVALIRNIIFLPKILLLDEVTTGLDNQSKDIVHNLIKDVS EKGVTIIQVTHDQSEIDEASNILRVKKGGIIE >gi|256541471|gb|ACPV01000003.1| GENE 3 2418 - 3176 474 252 aa, chain + ## HITS:1 COG:ECs0554 KEGG:ns NR:ns ## COG: ECs0554 COG0390 # Protein_GI_number: 15829808 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Escherichia coli O157:H7 # 6 251 15 260 268 246 57.0 3e-65 MKNVVVSNWSLVLAFALVLVSIGISVKEKLGLTKDILISVIRAIIQLVVIGYVLKFIFHV NALWLTLVSTIVIIFNASWNANQRDPNPGRNIWNSIIAEAVGTYVTLGILIFSGVIKPVP MQVIPITGMIAGNEMVAVGLCYKALNDSFNDLHQQVLEKLALGSDIKTASMPILRRSIKT AMQPTIDSAKTVGLVNLPGMMSGLIFAGVNPIYAIKYQIMITFMLLSATGLGAVISGYLA YKNYFNDRMQLK >gi|256541471|gb|ACPV01000003.1| GENE 4 3423 - 3983 402 186 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00700 NR:ns ## KEGG: LCRIS_00700 # Name: not_defined # Def: uncharacterized conserved secreted or membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 186 1 186 186 320 96.0 1e-86 MILLILIVAAIMFIYFNIIPGKRHTSIAWLSLIVTILCVVGIVEHDYNHWGMKTETTLST NTLVSSATPRLPILLYQPLGNGTEKVYLYKTGQLQKKPKSIKLDKVSTKVKRSSQPKVMI KTTRYTYSNTFNQIMFGVFGHDKELKHREYIFSIPSNWKVMSVNDAKQLQKQMMKKQQFL KQKSAQ >gi|256541471|gb|ACPV01000003.1| GENE 5 3984 - 5456 1543 490 aa, chain - ## HITS:1 COG:lin2733 KEGG:ns NR:ns ## COG: lin2733 COG0477 # Protein_GI_number: 16801794 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 3 476 7 480 493 460 53.0 1e-129 MNKQPTDIHGKAYNRNLLVLVLIIGSFCTVLNGTLLSTALPSIMRSFNISTATAEWLSTA FLLVNGVMIPISAWLINRFGSRKMYLSAMSIFFIGTVIAAIAPNFGTLLVGRIIQGLGVG VTMPLLQTIMLSIFPANKRGAAMGTVGIVIGLAPAIGPTLSGWIVDNLSWRYLFSIIAPI AGIVIILAFFLIKDVLPTKKEKIDVWSVTTSTLGFGSLLYGFSEAGNKGWTNPEILGFIG FGIIFVILFGIRQLKMDDPFLDITVFKHFEFSLAAALSGITNLAMVGIEMVLPLYIQNLR GVSAFHSGLMLLPGALMIGIMSPITGRLFDKYGARKMAITGMTLLTIGTIPFVFLTEQSS YTMIIILYAIRMVGVALVMMNVTTSGMNSLPLNKISHGTAVNNTFRQVLSSIGTAILVSV LTTTTNNNMPGKSLLHALPLEYKTRAISATLDGFHASFAMSILFSLIALVLAFFLKKGNR AREHQEKVDG >gi|256541471|gb|ACPV01000003.1| GENE 6 5617 - 6054 484 145 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00702 NR:ns ## KEGG: LCRIS_00702 # Name: not_defined # Def: transcriptional regulator, MerR family # Organism: L.crispatus # Pathway: not_defined # 1 145 1 145 145 266 99.0 1e-70 MKSKKIMHDIFQNLEIGIGEVSKLTGVSQRQLRYWETKGYIKPISDDQSGVRRYNLATLY LIVFIKEQLDEGFTLSAAFEHSKDIRLKSRIVHQFFRETFDDVKVTDSTKGYGEIDLGEF QAEDGSMHHFKGVVDEKGQYVKIDE >gi|256541471|gb|ACPV01000003.1| GENE 7 6176 - 7030 314 284 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 7 284 9 307 311 125 31 2e-28 MLIETFNLTKKYGKKLALNKVNLKINRGQLVAYLGTNGAGKSTTINILIGLLKPTSGTIT YAKDLKIGVVFQNSVLDDVLTVKENLYLRARMYKTFSKEWLEKLIGLIGIRSFLNQKYGT LSGGQKRRVDIARALIDHPDILFLDEPTTGLDLQTRIVIWDLLQKLQKEQGLTIFLTTHY LEEAENADQMYILENGNVLAEGSAEEIKEMYAPSRLLICLKQGQTFSTNFKQISKSDDQI EIDGLNSNQVIDLLHKFEDKIDTFEYRKGSIDDAFIKIAGKELQ >gi|256541471|gb|ACPV01000003.1| GENE 8 7030 - 7884 607 284 aa, chain + ## HITS:1 COG:lin0986 KEGG:ns NR:ns ## COG: lin0986 COG0842 # Protein_GI_number: 16800055 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Listeria innocua # 4 275 1 278 284 100 24.0 2e-21 MFALMKRNIKIYFANKPGVVMSCFGALISFVIYIGFLQQNLVDSWQNVSHAKQLLDLWML GGIVSIAGITTSFQALGQMVKDRESRAIDDIKLTNLTPISECMAYVASALIISFLMQVIT FLVMAIYFSVVDKVNIQSTVYLPALGFMLLGAIGATLLNLVIVLFINSSTTFSRLSAVIG AAAGFMVATYMPYGTLSKTAQNIVKLFPSSYEAASFRSLLLNKLSQEDVPDEMRQKLIEY LGIHFKFGSHQLTNGDNALVIIAMSLLLTVIVICLAVMLDRKKN >gi|256541471|gb|ACPV01000003.1| GENE 9 7888 - 8340 249 150 aa, chain + ## HITS:1 COG:no KEGG:LBA0248 NR:ns ## KEGG: LBA0248 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 150 1 150 150 167 64.0 1e-40 MNVEFQSDSNLKKDQIKIKVISLEETAEVKNLLAYIQDFGKKVDSILPIKTEDRILTIKI EEIIKVEVEKTELTFYTKSAVIKTTGRLYQVLEKLNNDFVQVSKYGIINLNYLEALEAGF TGNMIAKLAFKQKTDVSRRYLPKLEKKLGL >gi|256541471|gb|ACPV01000003.1| GENE 10 8342 - 8746 230 134 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0980 NR:ns ## KEGG: LGAS_0980 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 15 130 1 116 123 140 69.0 2e-32 MKIWHKVLDFCVTGMGFGAITCLLILGIVSNSVGAINIPLMSVIVVFICSGLIGELSFLF YTNLSYLVALLLHLIGTFTLFSIMMLFNHWLIDWQTLGIFIFVYIIIWIVIRLTQEKDIQ KINRQIKKRNGKDE >gi|256541471|gb|ACPV01000003.1| GENE 11 8833 - 9618 661 261 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00703 NR:ns ## KEGG: LCRIS_00703 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 261 1 261 261 446 98.0 1e-124 MKKRFLIAGASAVMVTLSLTALNSKPVKAAKNAVDFMTYLSKNKSLTKGQRSSARSAVKL LKTGRLGKKPKASWYNEYVDLHSNDDATSAKNIKAVLPYLNSVNRARRSEGVRSLKVSPL LTAASMLNADYQKRGGLKHTHYFKSIGLENIATQSVGLDPVDTWFSEKKSWNYDVKKNHS LKPAKYSPTWTATYDAAVEGTNGYKMAGHYLNLINRNYRVMGFANVSNTGYGNADSYLGS SKGAGISVAKYKALVNAWANK >gi|256541471|gb|ACPV01000003.1| GENE 12 9685 - 11118 1700 477 aa, chain - ## HITS:1 COG:STM0969 KEGG:ns NR:ns ## COG: STM0969 COG0531 # Protein_GI_number: 16764329 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Salmonella typhimurium LT2 # 9 466 7 466 473 385 46.0 1e-107 MVESQNNSKKMMWTTLAMMAFSTVWGFGNVVNGYVYFDGTKVVFSWIVMFLLYFVPYALM VGELGATFKNAEGGVSSWVNATMGAKWAYYAGWTYWACHVVYISSKGTGGLRAMAWGIFG NTKWYDGLPTAWTQFATLVVFLLFCWVASRGIPVLKGLATIAGSSMFIMSILFIIMMFAA PAINPSAGFHSIDFNWKNLMPTFNVKYFTSLSILVFAVGGCEKISPYVNKVKDPSKNFPK AMMALAIMVMVSAILGTFAMALMFDPKVVNANLNEYISNGAYMAFDKLGEYYHVGGLFMY IYSWCNVIGQFSTLVISIDAPLRMLLGSKEAKEFIPKGLLKLNKHGAYINGIWMVVVLSG GLIAIQALVPNAQAVMAQLVKLNSTTMPLRYLWVFAAYVALRKQQQKFNTTYQMTKHQGL AYTAGIWCFVVTAACCILGIYSPDPFTLFLNILTPIVLIALGLILPGIKKYQEAKAK >gi|256541471|gb|ACPV01000003.1| GENE 13 11287 - 12819 1837 510 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00705 NR:ns ## KEGG: LCRIS_00705 # Name: not_defined # Def: conserved protein with bacterial Ig-like domain # Organism: L.crispatus # Pathway: not_defined # 1 510 1 510 510 866 99.0 0 MLKGKKMLLTFVASAALVGGVFAISQSKVDAKSYSKAVTKIAGNGNYAIYHNVSKKGPSG AFSNTKYFKHGQIQSKKYVSTKKGNFWYIIVDGRNVGWVSQNFFARNQISVAQDVSLVHN SNYSFPTRDAINYATDGQGTAINPDRVNVSHSSVSSSRAGTTKVDYSYGKAKASVNVTVR SDTNEGITSAGASVKSGPKAVHTWNGGSKGSSRNWNQAHGYRSETSSNSYSGNGMTLRTR LFQPRFVSLGYGQAADAMGQVGVIPEGITVNDGIFTASMYTSSSDSRGHLVSYNLNAIKS KYAAQNLTTMGWSTFRSYANNIKVSPYIKLGHGQSLGSSSSYIYVLANNNKTANSTASEE IMQVRKSDMKINKIWTVKTWNGSSAYPRYFHNATFVGDNTMYALFHNGGRHQYEYWKLTR NGDTWAPEEIGATQSNFVTGSPVQGFAYDSNHNQFYIGFNDYIFRVAANGTYNGSHHFNT RREIEGLSVSGSTLYTELAQRAELMTTSTK >gi|256541471|gb|ACPV01000003.1| GENE 14 13233 - 14264 1037 343 aa, chain + ## HITS:1 COG:lin2554 KEGG:ns NR:ns ## COG: lin2554 COG2390 # Protein_GI_number: 16801616 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Listeria innocua # 1 342 1 342 348 276 42.0 6e-74 MDSDFSLLEALVPDVLKILRQRYLVLEQISLHAPIGRRSVAQHLGLSERNIRTETEYLCQ LGLIETKSFGMFLTEKGEKTLKDAGPLLDRLFNAGETEVALAKKLGIERTLIVPGNADFQ DRVYEEMGEKLSSALNLLLPLGHSIVTILGGAALARSAKYLSPDLANNRQLEFVPGRGAL GENVETQSNTIVQEMAAKTSGTYKTLYLPEQVSDDAYKSLIRESSIADVLQDISQSDAVI HGIGLAQEMAQRRGYNSIKLSELREKRAVTECFGCFFDEHGKVVDRITQVGLQFENLYKI PHIFAFACGARKAQAIKAYMPNAPHQTWLITDEGASNMILKGK >gi|256541471|gb|ACPV01000003.1| GENE 15 14317 - 15333 1393 338 aa, chain + ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 4 338 3 333 333 408 64.0 1e-114 MTVKIGINGFGRIGRLAFRRIMDLGEKSKDIEVVAINDLTTPAMLAYLLKYDTTHGTFNH EVSSTEDSIVVDGKSYHVYAEPQAQNIPWVKNDGVDFVLECTGFYTSKAKSQAHIDAGAK RVLISAPAGNDLKTIVYSVNEDTLTADDKIVSAASCTTNSLAPMANALDKEFGIEVATMT TIHAYTGTQMTLDGPSRSGKEQDARAAAENIIPHTTGSAKAIGLVLPNLNGKMNGHAQRV PVPDGSETELVSILSKKVTADEVNEAMKKYESPSFAYNGDHIVSSDVLNMTAGSIFDPTQ TMVTTAGDKQLVKTVAWYDNEYSFTCQMVRTLLHFATL >gi|256541471|gb|ACPV01000003.1| GENE 16 15448 - 16659 1843 403 aa, chain + ## HITS:1 COG:lin2552 KEGG:ns NR:ns ## COG: lin2552 COG0126 # Protein_GI_number: 16801614 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Listeria innocua # 1 403 1 396 396 503 67.0 1e-142 MAKLIVDDLDVKGKKVLVRVDFNVPIKDGVIGDDNRIVAALPTIKYIIEHGGKAILLSHL GRVKSDADKKELSLKPVAERLSELLKKPVTFVPSNEGKEVEDAINNMKDGDVIVLENTRF QDIDNDFGKRESGNDPKLGEYWASLGDMFVNDAFGTAHRSHASNVGIATAMKEAGKPAAA GYLLEKEIKFLGDAVENPVHPFVTILGGAKVSDKIGVIENLIPKSDHILIGGGMAYTFLA AQGHSIGKSLFEADKVDLAKELLAKAGDKIVLPVDNVAATEFSNDASREVVGDDIPDNMM GLDIGPKTVEKFKEILKDAKTVVWNGPMGAFEMPNFAEGTLEVGRALADLKDATTIIGGG DSTAAAKQLGIAPKITHISTGGGASLNYLEGKELPGIACVSDK >gi|256541471|gb|ACPV01000003.1| GENE 17 16684 - 17442 1031 252 aa, chain + ## HITS:1 COG:SP1574 KEGG:ns NR:ns ## COG: SP1574 COG0149 # Protein_GI_number: 15901416 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 1 250 1 250 252 330 65.0 2e-90 MSRTPIIAGNWKLHMNPEQTTEFVNAVKDKLPDPSKVESLICAPAVDLDALRKAAEGSNL HIGAENCYFEDEGAYTGETSPKVLKEMGMDYVIIGHSERRGYFHETDEDINKKAKAIFAN GLKPIICCGESLETREANKQEDWVVAQIKAALDGLTAEQVSSLVIAYEPIWAIGTGKTAS SDQAEEMCKTIRETVKDLYNEETAENVRIQYGGSVKPANVKELMAKPDIDGGLVGGASLV PESFLELVNYQD >gi|256541471|gb|ACPV01000003.1| GENE 18 17727 - 18180 245 151 aa, chain + ## HITS:1 COG:no KEGG:Ldb1782 NR:ns ## KEGG: Ldb1782 # Name: not_defined # Def: transposase # Organism: L.delbrueckii # Pathway: not_defined # 1 151 1 151 349 300 98.0 1e-80 MDSLHSTMNHHIKGKHLSFEERVIIQLRLKDGYSLRAIARELNCSPSTISYEVKRGTVEL YHGKVKRYKATQGHDAYQAHRKNCGRKSDFLRKTQFMRYVHKHFFKDGWSLDVCSNRATA VGAFSSRDVVCTKTLYNYVDQGLLDIHNYDL Prediction of potential genes in microbial genomes Time: Wed May 25 05:04:11 2011 Seq name: gi|256541470|gb|ACPV01000004.1| Lactobacillus crispatus 125-2-CHN cont1.4, whole genome shotgun sequence Length of sequence - 21128 bp Number of predicted genes - 22, with homology - 22 Number of transcription units - 7, operones - 5 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 339 - 376 1.9 1 1 Op 1 . - CDS 385 - 900 462 ## LCRIS_00710 hypothetical protein 2 1 Op 2 . - CDS 920 - 1795 1028 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 1817 - 1876 5.2 + Prom 1764 - 1823 6.8 3 2 Op 1 . + CDS 1863 - 2561 515 ## COG0692 Uracil DNA glycosylase 4 2 Op 2 . + CDS 2572 - 3561 1086 ## COG0280 Phosphotransacetylase 5 2 Op 3 . + CDS 3561 - 4040 459 ## COG0802 Predicted ATPase or kinase + Term 4042 - 4092 9.3 - Term 4037 - 4073 3.4 6 3 Tu 1 . - CDS 4078 - 4611 574 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases - Prom 4734 - 4793 5.5 + Prom 4625 - 4684 7.2 7 4 Op 1 3/0.000 + CDS 4707 - 5603 898 ## COG0812 UDP-N-acetylmuramate dehydrogenase + Term 5623 - 5658 -0.5 8 4 Op 2 30/0.000 + CDS 5670 - 6767 943 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 9 4 Op 3 36/0.000 + CDS 6781 - 7569 638 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 10 4 Op 4 25/0.000 + CDS 7566 - 8381 530 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 11 4 Op 5 . + CDS 8378 - 9451 1014 ## COG0687 Spermidine/putrescine-binding periplasmic protein 12 4 Op 6 7/0.000 + CDS 9490 - 10332 940 ## COG1624 Uncharacterized conserved protein 13 4 Op 7 6/0.000 + CDS 10329 - 11288 839 ## COG4856 Uncharacterized protein conserved in bacteria 14 4 Op 8 . + CDS 11311 - 12663 1794 ## COG1109 Phosphomannomutase + Term 12684 - 12736 6.8 + Prom 12673 - 12732 8.7 15 5 Op 1 . + CDS 12764 - 13579 824 ## COG0561 Predicted hydrolases of the HAD superfamily 16 5 Op 2 . + CDS 13610 - 14050 275 ## COG3682 Predicted transcriptional regulator 17 5 Op 3 . + CDS 14065 - 14781 570 ## LCRIS_00726 hypothetical protein 18 5 Op 4 . + CDS 14781 - 15236 602 ## COG0394 Protein-tyrosine-phosphatase + Term 15239 - 15275 5.1 19 6 Tu 1 . - CDS 15261 - 16406 1456 ## COG1929 Glycerate kinase - Prom 16606 - 16665 5.1 + Prom 16389 - 16448 9.0 20 7 Op 1 7/0.000 + CDS 16616 - 17449 630 ## COG3711 Transcriptional antiterminator + Prom 17496 - 17555 3.4 21 7 Op 2 8/0.000 + CDS 17577 - 19598 2431 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 22 7 Op 3 . + CDS 19640 - 21115 1965 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Predicted protein(s) >gi|256541470|gb|ACPV01000004.1| GENE 1 385 - 900 462 171 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00710 NR:ns ## KEGG: LCRIS_00710 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 171 1 171 171 345 100.0 5e-94 MRFWLELNQEKDYGQIPVLNQNGKAEFFIQGNLDNPNHTLYLNNFRKQEVGRLFSDGAGL IASFTIDVVNHSLVGVKKLNTPTANIFYLTQLKYIVTGSIKRGTYTFRSGIKSVASVQTI MGDRGGVLICDITKPEDVPFILLTSVLFTQWHVTPLKLPSFPPIGFEVNPN >gi|256541470|gb|ACPV01000004.1| GENE 2 920 - 1795 1028 291 aa, chain - ## HITS:1 COG:SA0517 KEGG:ns NR:ns ## COG: SA0517 COG0561 # Protein_GI_number: 15926237 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 287 1 286 289 156 36.0 5e-38 MIKLVACDLDGTLFNSEMAVSAANAKAVKNAQSSGIEFLIATGRAPRESRSVLKDADLHT SFINLNGALVFDENEQLMIKHSIPKAKAQQLVHLLHRAGFYFEILTANQVYSENLDQRIS NVAHLMVDLNPLLDFRQAVAISAGNKTIMNMKQIHSFDNLLQDPKIEVMKIIAFDSRGHE AFTDIKKEIATMGDLVVTSSSSSNIEINEQHAQKGLALLDYAKLKGIEPEEIAAIGDNLN DESMIRAAGTGVAMGNAIPAIKKIAQVVTKRNNEDGVAYILNKFIADNNNI >gi|256541470|gb|ACPV01000004.1| GENE 3 1863 - 2561 515 232 aa, chain + ## HITS:1 COG:BH3850 KEGG:ns NR:ns ## COG: BH3850 COG0692 # Protein_GI_number: 15616412 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Bacillus halodurans # 5 223 3 222 224 256 56.0 3e-68 MAKELIGNDWDQVLDPVFASEKYHELHNFLKEEYSTKQIYPDMYHIFTAFKLTPFAKTKV VILGQDPYHNPGQANGMSFSVMPGTTLPPSLKNIYKELYDDVGARPVNHGYLKKWADQGV LLLNAVLTVPYGHANGHQGKGWEDVTDTAIKALSERGKVVFILWGRFAQNKIPLIDQSKN FIIKSSHPSPFSADRGFFGSRPFSRCNMALKNFDETPIDWQLPETISKSDLA >gi|256541470|gb|ACPV01000004.1| GENE 4 2572 - 3561 1086 329 aa, chain + ## HITS:1 COG:BS_pta KEGG:ns NR:ns ## COG: BS_pta COG0280 # Protein_GI_number: 16080818 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Bacillus subtilis # 3 324 4 323 323 342 57.0 6e-94 MSVFSLFKKQVEAAKDKKRIVFPEGDDLRILTAIANLKKDGIIEPILIGNPDEIAKLVKE NNLDLAGVKIYDLNHYDELDQMAAEFVKARRKDTSIAEAKLKLAQGNYFGTMLVKMGKAD GMVSGAAHSTANTVLPALQLIHAAKGMHRVSGAFVMEKGDERYIFADCAININPDEETLA EIGYQSALTAKMAEIDPKVAFLSFSTKGSAEGPMVDKVHDAAAMFQKDHPEIPADGELQF DAAFVPAVSEKKAPNSKVAGHANVFVFPELQSGNIGYKMVQRLGGFTAVGPILQGLAAPV NDLSRGCSEQDIYDLAIVTAAQALAKDEK >gi|256541470|gb|ACPV01000004.1| GENE 5 3561 - 4040 459 159 aa, chain + ## HITS:1 COG:lin2184 KEGG:ns NR:ns ## COG: lin2184 COG0802 # Protein_GI_number: 16801249 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Listeria innocua # 13 148 18 145 153 121 47.0 6e-28 MTKLEINSADGMQKLGASLAKTAQPYDLLLLNGDLGAGKTTMTQGLGRALGIHRPVKSPT FTIVREYREAKLPLFHMDFYRLENDDLSSIDLEGYLAEPGLVVIEWPQLVMNDLPDEYLQ LTITRVDDSWDSTKRVVEFTPHGKRNEEWVKAALTEFNK >gi|256541470|gb|ACPV01000004.1| GENE 6 4078 - 4611 574 177 aa, chain - ## HITS:1 COG:SA1710 KEGG:ns NR:ns ## COG: SA1710 COG0847 # Protein_GI_number: 15927468 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Staphylococcus aureus N315 # 3 175 6 171 184 106 36.0 3e-23 MNFIAMDFETANHYPESACSLALVMVRNNKIVDRFYTVINPQMPFDARNIQVHQITAEDV KNAPTMAEVWPHIKELYQPGMLVAAHNARFDTNVMRQSLARYGIEEPHYLVIDTLASSKL LEPELPDHKLDTVSEALNVELWHHHNALSDSEACAGILIKQEEQFGDEAIKNLVYQI >gi|256541470|gb|ACPV01000004.1| GENE 7 4707 - 5603 898 298 aa, chain + ## HITS:1 COG:lin1459 KEGG:ns NR:ns ## COG: lin1459 COG0812 # Protein_GI_number: 16800527 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Listeria innocua # 11 298 11 298 298 314 55.0 1e-85 MELLDLKEKGIDIKEQIPLSRYTFTKTGGPAEYLAFPKTTDEVEQLVKVTRENEIPLTII GNASNLIIRDGGIDGLVIILTELKEIKVEDNQVTADAGARIIDTAFAAAHHGLSGMEFAA GIPGSIGGGIFMNAGAYGGEMQEVVQSVNVLTRAGEFKTYSNAEMNFSYRHSLVQENGDI VLSATFALKSGDKLEILDHMHYLNALRRYKQPLEYPSCGSVFKRPTGHFVGPMIIKAGLQ GKQIGGAQDSMKHAGFIVNKGGATATDYLNLIHLIQKVIKEKFDIDLRTEVRIIGKEK >gi|256541470|gb|ACPV01000004.1| GENE 8 5670 - 6767 943 365 aa, chain + ## HITS:1 COG:lin0797 KEGG:ns NR:ns ## COG: lin0797 COG3842 # Protein_GI_number: 16799871 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Listeria innocua # 3 359 5 361 364 442 60.0 1e-124 MDIIKLKHITKKYDDGFVALKDINLTIESGKFYSLLGPSGSGKSTILRIIAGFTQPSSGQ VLFDGNDITDLDASKRHINTVFQNYALFPHLDVFQNVAFGLKIKKRPMSEIKPAVKDALH MVRLDGYANREISELSGGQQQRVAIARAIVNEPKVLLLDESLSALDKRLRKDMQFELRAI QKKLGITFIFVTHDQEEALSMSDEIFVLNDGQIQQSGNPVAIYDEPVNDFVARFIGDSNI LSGRMIHDYEVEFANNKFKCADGGMKPNEKVEVVIRPEDLDIVKPEDGKIVVTAQTQLFL GDHFEIKAIDANENEWLIHSTNGVKLGQRVGLFFDPEDIHVMRLNESQHDFDARLEKYEA DENEK >gi|256541470|gb|ACPV01000004.1| GENE 9 6781 - 7569 638 262 aa, chain + ## HITS:1 COG:lin0798 KEGG:ns NR:ns ## COG: lin0798 COG1176 # Protein_GI_number: 16799872 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Listeria innocua # 1 257 10 265 269 295 65.0 5e-80 MIPYLLWIILFVILPILLILWYSFTDSNNAFTLRNYVEFFKNGTFLKMMLNSFWYAFLIT LLTLVISYPAAYFLIKMKNQQLWLLLIILPTWINLLLKAYAFIGILGNDGLVNKFLHLFG IGPVNILFTDFAFIFVATYIEIPFMILPIFNAIKEINPAVIHASEDLGASKWQTFRYVLW PLSRPGVESGVQAIFIPSLSLFMLTRLIGGNRVITLGTAIEEYFMTTMNWNMGATIGVIL IALMVVVMLITSKKARRKKVDL >gi|256541470|gb|ACPV01000004.1| GENE 10 7566 - 8381 530 271 aa, chain + ## HITS:1 COG:lin0799 KEGG:ns NR:ns ## COG: lin0799 COG1177 # Protein_GI_number: 16799873 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Listeria innocua # 10 260 9 259 268 283 65.0 3e-76 MRNRHLIAKIYLAFTLILLYVPIFYLIYFSFSSGKNMNKFEHFTWAHYQTLFQDNRLLAI FLETILLALLSSLIATIIGTFGAIAIAAMKKESNKKTTLALNNVLMVSPDVIIGASFLIF FTALGIGLNFGSVLLSHIAFSIPIVVLMVLPRLNEMDMSLIDAARDLGANSWQVFSDVLI PVIMPGIFSGLFMALTYSLDDFAVTFFVTGNGFSTLSVEIYSRARQGIDLEINALSTVMF IFVLLLVGIYYFITTKKGRKKNHRVMGGLVK >gi|256541470|gb|ACPV01000004.1| GENE 11 8378 - 9451 1014 357 aa, chain + ## HITS:1 COG:SP1386 KEGG:ns NR:ns ## COG: SP1386 COG0687 # Protein_GI_number: 15901240 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Streptococcus pneumoniae TIGR4 # 1 357 1 356 356 394 54.0 1e-109 MKKIMMAIAAILIACAGLWGLSHHLEKSSTGKNKQNLIIYNWGDYLDPKLIKKFEKQTGY HVVYETFDSNEAMYTKIKQGGTAYDLTIPSEYMVTKMRKAHLLDQLDQKQIPNLKYIGKS FLHKSFDQNNDYSVPYFWGTLGIVYNDKFVKPGAIKTWNDLWSKKYRRQILLVDSARDAM GMALVSLGYSMNTTSSIKLHLAQTKLNSLGPNIKAIISDEMKMYLVQNEAAIGVTWSGEA YEMMEQNPHLHYVVPKQGSNLWFDNFVIPKTVQNKKAALKFINFMLEPKNAAPNAEYVGY ATPNTAAQKLLPKKVRDDRQFYPTQSTLKNLQVFRDLGPKKTQEYNDLFLEFKMYAR >gi|256541470|gb|ACPV01000004.1| GENE 12 9490 - 10332 940 280 aa, chain + ## HITS:1 COG:lin2225 KEGG:ns NR:ns ## COG: lin2225 COG1624 # Protein_GI_number: 16801290 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 4 262 2 260 273 287 54.0 1e-77 MHFNISNLFTWNNFSIALDILIIWYLVYRLIMMIRGTKAVQLAKGIVFIFIVRIIAGLLQ LHAVTYIVDQIVSWAVIGIIVIFQPEIRRGLERLGRTPIFNGRGESAHTQSVKMVQELDK AIQYMSKRRIGALITIQQDTGLDDYIETGIKLDADISGELLINIFIPNTPLHDGAVIINN NRIAVAAAYLPLSDNSMIPKRLGTRHRAAVGISEVTDAVTIVVSEETGGVTITRNGRFLV DLSREEYLKYLNAQLVPKEEKKVPWIRRVINKVWKWGADR >gi|256541470|gb|ACPV01000004.1| GENE 13 10329 - 11288 839 319 aa, chain + ## HITS:1 COG:lin2224 KEGG:ns NR:ns ## COG: lin2224 COG4856 # Protein_GI_number: 16801289 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 53 313 49 311 452 130 30.0 2e-30 MKDFWDKRWVIRIISLLFAILLVVYIDSTQTGFVTQGESKKTRQTANETQTISVPLQVSV NTDKYYVVGYPEKVKITLEGSNALVTSTVNTQSFRAYIDLTHKKIGKQTVKVEVTGLNSQ LSYTINPATVNVDIERRKSRTMPVQIEYNKNAVANGYNIGTASVDPQQVEVTGARSEVNQ IDQIVAKLPLPNGINHDYERQVILIAEDKKGRQLNAVINPSTVKASLPISLFKKKVKLNL KPKNEKNNKVYSVTAKNDEVTLYGQKETLAKIKQLDVDVDLKGISYSTVKNYPLVLPKGV ARVDPENVQISIKVKNANN >gi|256541470|gb|ACPV01000004.1| GENE 14 11311 - 12663 1794 450 aa, chain + ## HITS:1 COG:BS_ybbT KEGG:ns NR:ns ## COG: BS_ybbT COG1109 # Protein_GI_number: 16077245 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Bacillus subtilis # 1 449 1 446 448 527 62.0 1e-149 MLKYFGTDGVRGVANQGLTPEMAFKLGRDGGYVLTKNKKDGEQAKVLVSRDTRISGQMLE YALISGLLSVGIEVLEVGVITTPGLSYLVRAQGADAGVQISASHNPVEDNGIKFFGSDGL KLSDEMEGEIEKLIDAKEDKLPRPSAKGLGTVTDFHEGSAKYLQFIENTIPEDLGGIKVV IDGANGASSALISRLFADCGVDFTTIATHPDGLNINDHVGATHTEKLQEEVVKQGAQLGL AFDGDADRCIAVDENGNEVDGDHIMYVLGSYLAEHGRLKKDTIVTTVMSNLGFTKALEKE GLKNVRTQVGDRYVSEEMRAHGYNLGGEQSGHVIMSDYHNTGDGMLTGLHLMLVMKKTGK SLSELLKDFKDYPQCLVNVPVADKKSWKEHQPILDEIAAVEKDMAGNGRVLVRPSGTQDL LRVMAEGPTQEETDAYVDRIVKVVEKEMGK >gi|256541470|gb|ACPV01000004.1| GENE 15 12764 - 13579 824 271 aa, chain + ## HITS:1 COG:lin0298 KEGG:ns NR:ns ## COG: lin0298 COG0561 # Protein_GI_number: 16799375 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 4 271 3 268 270 160 36.0 3e-39 MAIKLIAVDLDGTLLSSNNTILPETQRMLRVAVQNGIKVVLATGRPLSGVLNFAKQLGIE GDDQYAIVFNGAVIQTISGRVLMSQELNYQDFNNMLRFQRLSHVNVHFETTKYFITTDRD LSVQMQINAALTDNIMKVRDRKEIPKDFTFNKVGFTSTEGADQVEKLWNSFPDWAFQTYD IVRSFDSIIELNALGASKGNALMDLASRLKIAQKDVMIFGDQGNDLSMFSNPNFMKVAMG NAISEIKDKADYVTDDNDHNGIAKALKKFVL >gi|256541470|gb|ACPV01000004.1| GENE 16 13610 - 14050 275 146 aa, chain + ## HITS:1 COG:SPy1717 KEGG:ns NR:ns ## COG: SPy1717 COG3682 # Protein_GI_number: 15675568 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 11 142 4 135 144 99 34.0 2e-21 MAETKDDRNSITQSEWEVMRIIWTLGEVRTGQVIKELQGKKDWSDSTIKTLMRRLVQKGL LKTRKEGRCFVYKPTISQRKMMSEVTLHMMQNMCDMHKGEVLIQLLKEAPLSKGDIKTMQ QELKLKEKDAPDMVPCNCLPSEKSRC >gi|256541470|gb|ACPV01000004.1| GENE 17 14065 - 14781 570 238 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00726 NR:ns ## KEGG: LCRIS_00726 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 238 1 238 238 399 98.0 1e-110 MKNIVKIILRLIMVGLAAVSFWLLMTSNVNLKINDTQAMGKEVINRVVDDSDNPNLKAGV ELLEASGLEKTLLEQLPPKYQVNLSYADLYRLCEKYNDQGKLTTKDLGLTSKSKLEEIIN EYLVKQINHKLKEDSEDVNHIITIYEYSIFAVALLFLLAAILILFGRSSASIPLALATIA SFVALWLASNEAMTALQSRVYSGILVTLSQEIWVGLTVGVITAIIWPVINRLTKRKKR >gi|256541470|gb|ACPV01000004.1| GENE 18 14781 - 15236 602 151 aa, chain + ## HITS:1 COG:SP2028 KEGG:ns NR:ns ## COG: SP2028 COG0394 # Protein_GI_number: 15901849 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 151 1 140 142 106 37.0 2e-23 MKKILFVCHGNICRSPMAEAVMQYLLKENNLADQYTAESKATTQDALGHGIDARAQRELV AKHIPYDRGHRASQMTRSDYDNYEYLICMDEENFADMNRITGGDPEHKEHKILEFAGSYA DVDDPWYTNDFETAYNEIYRGCEGLIKKLTK >gi|256541470|gb|ACPV01000004.1| GENE 19 15261 - 16406 1456 381 aa, chain - ## HITS:1 COG:L79277 KEGG:ns NR:ns ## COG: L79277 COG1929 # Protein_GI_number: 15672838 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Lactococcus lactis # 2 379 4 377 385 394 58.0 1e-109 MKFVLAPDSFKESMTAKEVCIAMKNGIQKVIPNAQITAVPMADGGEGTTDSLVDATGGQK YQINVTGPLNQKVSAYYGISGDGQTAIIEMAQASGLSYVAKSKRTPETILKTTTYGTGEL INAALKHHVKKIIIGLGGSSTNDGGAGMAQALGVKFFDQNHHEITQKLAGGALDQIVNID LSSINPRIKDTQFLLASDVTNPLTGPNGASSVFGPQKGADDTTVKILDQNLSHYAQVIEQ TIDKNVAQISGSGAAGGLGAGLIAFTNASIHPGVQLIAQETKLEAKIKDADYVFTGEGGT DFQTKFGKTPFGVAKIAKKYHIPVISLAGYLDQGIDQLYDEGFTAIFGILAKAEDIEQAL KDGPINVTRTTENIVRLIAQK >gi|256541470|gb|ACPV01000004.1| GENE 20 16616 - 17449 630 277 aa, chain + ## HITS:1 COG:lin2530 KEGG:ns NR:ns ## COG: lin2530 COG3711 # Protein_GI_number: 16801592 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 274 1 277 285 149 31.0 5e-36 MKFLKTFNNSAALIENNQGQEEIVLGKGVGFGLKKSDPVDESKIERRFVTKDEVDQVKGF DPKTIEVTNKVLQLVEPLLQIKFNDFQYLALADHIDFAVTRIKDHIDIAPANNSWEVQNL FPKEFAAAKKVVNLINQEMQIKLPQSESVLMTYHLVNAKSDVSQVQETIQITNLIRGIID IIQLQYSMQLNTSSFNYSRFVSHLRILLVRFLRNKQKEEASLDPAMLGFMKIKYSKAYET AERITTYLHAKMGWDLDSDDEFYLVLHIWRVTSRQDN >gi|256541470|gb|ACPV01000004.1| GENE 21 17577 - 19598 2431 673 aa, chain + ## HITS:1 COG:lin0026_2 KEGG:ns NR:ns ## COG: lin0026_2 COG1263 # Protein_GI_number: 16799105 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Listeria innocua # 92 468 5 380 399 338 47.0 2e-92 MAKNYDELAKTIIQNVGGKDNVTSVVHCATRLRFKLKDEKKANDDVLKDTDGVVTVVKAG GQYQVVIGNEVADVYDAVVKEGGFNGGGQVPDDDVEDNSSFVDKAVALISGIFTDILAPL SAGGIIKGLVVLVGAMGWLSTKSGTYQILYAIGDSIFYFLPVFLGVTAARRFHMNQFIGL AIGATLTYPTMVQLAASKTVLGTLFKGTAFASEIHTTFFGIPVITMNYTSTVLPVLFTVW FASIIEHWAKKWIPSVVQMFLVPVVTMIIALPVAFIVIGPVMTWVGDAIGAVMSGVYNFS PIIAGLLMGALWQVLVIFGVHWGIVAVTTADLAALGYDPILGLSCMVCYAQIGVVLAIIR QTKDKKLKETATGAFFSGLFGVTEPAIYGITLPRKTPFVLSCIAGAVSGAIIGAFHSVLY IMPSMGFFAIPAYINPKGGSMTTIVGVIIAGIVAFIAGFALQMLFGKKSVDAEYNKKQAQ KVADAANEAANITKSAPVQAILSEEKENPSTKLVSPLDGEVKPLSEIKDEVFSSGAMGEG VAIEPSEGVLHAPADGKIALVFPTGHAVGLNTTDGAEVLMHIGMDTVNLQGKGFKTLVEK GQEVKAGDPLVKFNIKEIKAAGYEVTTPVVVTNSKKYESVQQVAQGEVKVGQEILSLQGS NAEVKTTGQVQTN >gi|256541470|gb|ACPV01000004.1| GENE 22 19640 - 21115 1965 491 aa, chain + ## HITS:1 COG:CAC1405 KEGG:ns NR:ns ## COG: CAC1405 COG2723 # Protein_GI_number: 15894684 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Clostridium acetobutylicum # 1 491 1 473 473 522 53.0 1e-148 MSFPKNFLWGGATAANQIEGAYDEDGKGLSVTDITTAGSLDAPRMLTYKLNGKLEKTPGV PGAGLPEGAVGAIDPNEYYPNHVAIDFYHHYKDDIKMFADMGFKTFRLSIAWTRIFPKGD EEKPNQAGLDFYRRVFEECKKYDIEPLVTISHYEDPLYLSEKYHDWQDRKMIDMYVKYAK TLFEEYKGLVKYWLTFNEINSTLLMLSAFGNNVTDDKAYQHAYQKLHYQFVASARAVKLA HEIDPDYVVGNMICGIVDYPLTPDPKDILTNRHMWEQNIFYCGDAQCKGKYPTFAKRLWK EHNVHLDITEQDKKDMLEGKVDMYTFSYYMSNVITTHEVKDKVGCNFAAGAKNPYLKYSE WGWATDPDGLQYYLEVMYDRYEIPMMVVENGLGAVDKISDDGKIHDDYRIDYLRMHIKAM NRAIEDGVDVRAYTTWGCIDEVSAGTGQMSKRYGFIYVDRDDEGKGTLKRMPKDSFYWYK KVIESHGEDLD Prediction of potential genes in microbial genomes Time: Wed May 25 05:04:22 2011 Seq name: gi|256541469|gb|ACPV01000005.1| Lactobacillus crispatus 125-2-CHN cont1.5, whole genome shotgun sequence Length of sequence - 9456 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 4, operones - 1 average op.length - 6.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 2 - 61 8.4 1 1 Tu 1 . + CDS 103 - 1050 632 ## COG1073 Hydrolases of the alpha/beta superfamily + Term 1056 - 1093 -0.3 - Term 1034 - 1089 11.1 2 2 Op 1 . - CDS 1091 - 1807 728 ## COG2200 FOG: EAL domain 3 2 Op 2 . - CDS 1822 - 2190 213 ## COG0720 6-pyruvoyl-tetrahydropterin synthase 4 2 Op 3 . - CDS 2180 - 3508 564 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 5 2 Op 4 . - CDS 3521 - 4108 614 ## LSL_0906 hypothetical protein 6 2 Op 5 . - CDS 4128 - 5234 525 ## COG2199 FOG: GGDEF domain 7 2 Op 6 . - CDS 5237 - 6610 861 ## LSL_0907 hypothetical protein - Prom 6677 - 6736 4.5 8 3 Tu 1 . - CDS 6753 - 7451 464 ## gi|256842806|ref|ZP_05548294.1| predicted protein - Prom 7532 - 7591 11.7 - Term 7612 - 7665 2.1 9 4 Tu 1 . - CDS 7684 - 9282 1850 ## COG0531 Amino acid transporters - Prom 9387 - 9446 4.9 Predicted protein(s) >gi|256541469|gb|ACPV01000005.1| GENE 1 103 - 1050 632 315 aa, chain + ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 12 313 10 305 308 249 43.0 5e-66 MNRKRKKVWWIIGIVATVLIVLIGAVEAYFFNVAFVPGEKTVLNKYSSKKKKDSLAQNKK WYKNAKKEHWYIKSASSNYRLDANYIPNKHSEKTAVLLHGFGNNKNTMAPYAAMFHQLGY NVLIPDARAHGQSQGKYIGYGWPEKYDVRKWVNKDLSIEGRKQQIVIFGVSMGGATTMMT SGLKMPKQVKAYIEDCGYSDVKAEFMHEAKDLYGMPQAVATSAVTLLSGVSKANLGFYLG DASAVKQLKKNTKPMLFIHGGKDNFVPTKMVYQNYHATNGPKELWIAKSAAHARSFETYP HEYKMRINKFLNKYM >gi|256541469|gb|ACPV01000005.1| GENE 2 1091 - 1807 728 238 aa, chain - ## HITS:1 COG:lin0158 KEGG:ns NR:ns ## COG: lin0158 COG2200 # Protein_GI_number: 16799235 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Listeria innocua # 18 219 14 224 232 73 29.0 4e-13 MSKWYNVFQPIYQVDKDLNVTISHYEMLLRDENDSFPNNDFFRVIGTEEENQKWILAEKE SIDQAFAKYPDICINLNIEPIQFAYPSVWKFIENIYSKYGKKVVIEVTERQLQAGTLGNK QFDKSFQRFHDIGLDVVLDDVDSGGHSFTFVDHHSDIISGIKLSLLDFDPISSDTTIKFI DAWASFAKEKHLDLVVEAIRNKEIAQKFAGNKHIFQQGYYWQQGVKLEDLPTVYGFKK >gi|256541469|gb|ACPV01000005.1| GENE 3 1822 - 2190 213 122 aa, chain - ## HITS:1 COG:CAC2585 KEGG:ns NR:ns ## COG: CAC2585 COG0720 # Protein_GI_number: 15895845 # Func_class: H Coenzyme transport and metabolism # Function: 6-pyruvoyl-tetrahydropterin synthase # Organism: Clostridium acetobutylicum # 4 121 2 119 153 85 39.0 2e-17 MTTKYHTYIFTTYLNASHAIRWSKGIGQAHSHTYEIRYSFHINNGKLIRFNEIENKIAEI IKKFNNQFLNEVEPFTKVNPTLENLTDYLFNRFGEELNKLNCSLDEISVSESPMRTYQIS IR >gi|256541469|gb|ACPV01000005.1| GENE 4 2180 - 3508 564 442 aa, chain - ## HITS:1 COG:CAC2589 KEGG:ns NR:ns ## COG: CAC2589 COG1215 # Protein_GI_number: 15895849 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Clostridium acetobutylicum # 1 439 4 447 456 354 41.0 2e-97 MFDQTVLQMGFWATWLLIPVIFEEIPMIINFIRLLHHHKIRKKTPLPDFLPVLSIIIPTY NSSKTLYRCLKSLADSDYPKNLLGIFVVDNGSKDDTFQVFAKAQTDYPQLLMRWLTSPHG KSSALNAAIYKARSQYIINIDSDGRLDKHALNNIVKKFSANPNIDALTGTILTDRHLIKK PHKLLKLNEYFEYCQTFLAGRNIENNSNHIFTLSGAFSAFKRETLIRTYLYSTDTISEDT DMTFQIRYNLKGTISFCDDAIFYSEPISGFSELYTQRQRWQRGELEVINKYLSQVLSWKQ FFSNFQIRRLIIDHTVTFLKIIWMFAIFILLGFGYSWISLLFSYAVIYLLYLFLEISSSI CVYIYLGSFPEERKFYLKNIWMIFLLLFYNLLCSFIRCVGIINASTTTTTWQGINIIQEG QQVNQIIKKDIRQLLKRKNYDD >gi|256541469|gb|ACPV01000005.1| GENE 5 3521 - 4108 614 195 aa, chain - ## HITS:1 COG:no KEGG:LSL_0906 NR:ns ## KEGG: LSL_0906 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 1 184 1 184 198 143 48.0 3e-33 MLNGYLIGGIIVWLYALSVTNRAHLFAFYYWVGAIGAFLLTTFACHKYFVWFLASLVSRG AGVIGQLTHSFTAYPFPAALDIQTTFGSITLLVDYECSGIIETLAYLSLLIFFPIYTRRQ KVALSIIGVFWIYFINICRLGLIGITVHYLNLRTLFWVHDVIGRIFFYIFTILLYYQVFT HSQLVSNLLGRSKLD >gi|256541469|gb|ACPV01000005.1| GENE 6 4128 - 5234 525 368 aa, chain - ## HITS:1 COG:VCA0848 KEGG:ns NR:ns ## COG: VCA0848 COG2199 # Protein_GI_number: 15601603 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Vibrio cholerae # 202 365 142 300 326 99 34.0 9e-21 MNLSLIYPTISLPIITISMVVTQTQIEKVWEKQLEDWRHHLFIILCFTTFYILQTVCIAN VTIFTFKAIAYMYVIPTIMVLRNKQHIWWFLLFITPLIPLLIGLDLKRYSFINIPATLLQ ISSIALICFILNHCQNLSYQVKYIIALYSGSLIHFVRLYIENELHLTFLIALTIGTTFTI IGESWRYYFESRHEEAIAKLHYESKRDELTGLLNFRAFDQEMKNLSKRPNITNTYIGAID IDHFKVINDTYGHLNGNIVLHTFSKKLKHEIDKAFAPNCFVYRFGGDEFSIVIFNANPEQ IIAALNNVEQYFRDNFIKLPDNKTKIKFSFSCGFTKHLSNEHFYNTLERADDLVYKVKNN GRGKILTD >gi|256541469|gb|ACPV01000005.1| GENE 7 5237 - 6610 861 457 aa, chain - ## HITS:1 COG:no KEGG:LSL_0907 NR:ns ## KEGG: LSL_0907 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 31 450 79 502 514 306 42.0 1e-81 MFALLLILVLSWFSFPKFQMFLKTIFIKHKWITSIICLVLALIWQIQFVYFVHPAIGFDV SAVHNTIINPNLPELRGYFSVNYNNLSILLTLRQVANIFHSTSWLTMALCSTLVTDLSVL VIIATIAIINFQKIPNIIYILASLLSIFPICMVPYTDVWCLLPISLSIFGWSIATQKSYL VVIRFLGAILSGISLACGVWIKPSVAVWGIAAILTSLLYILKNNKVILTSIFCLTIAASF VLAYQPLKKAVQDQHYIIVNQKRQIPMIHFINVGLTHDGAYDPKAALKMDELPTKKQKVV YSKKMIIKRLKKRGPLGYLQFLVKKQGLNTADGTFGWLHEGHFIISKQPSEGWRGFLAEF IYPNGKYVIEFRFIAQILWTIIIFVLLFSFQKGGFIIQTLRMALVGGFIFLLLFEGGRSR YLVQFLPIILILTALSADTAKYNLDKILTAILPKRGF >gi|256541469|gb|ACPV01000005.1| GENE 8 6753 - 7451 464 232 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256842806|ref|ZP_05548294.1| ## NR: gi|256842806|ref|ZP_05548294.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 232 18 249 249 472 100.0 1e-132 MKNIRKKIIVFLLALECLAFCISFNSKVYASWSPASEWKENGYPTEDWTTDQFTYHQIGF INDPKNNQLLLYVDICPDSKTNRNSHGYEGGYRQLQPSAYNINVGNATYSVNLDVNPWNI QNGKSGYAGIGVWDPQTNQYKATKDNLCHYYADSDGRQSAIIKIPYNMFNRDDLNGSTKM TMQNPNLGGNTKITISGASTGPYIPAIIAFVLASIAAISYYHKRKLVRHEHQ >gi|256541469|gb|ACPV01000005.1| GENE 9 7684 - 9282 1850 532 aa, chain - ## HITS:1 COG:ycaM KEGG:ns NR:ns ## COG: ycaM COG0531 # Protein_GI_number: 16128866 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 2 466 72 536 540 333 37.0 4e-91 MKAITWPVLTLMALCTVIGLDDIMYNFQNQGMPVITSWIIMCLLYVTPYSLMVGQLGSTF SEEGGGLSSWVRGTDGEFLGYFTAWTYWSASIPYAVDSANEIIVDLGWALTGSKGFQDKI PTTMFAALTFVVFIVFIIVEHHFANSMEFLSSIGGGLMVIMTVLFVFLAFVGLAKSGGHM ATQPFTWHTIIPKFDLHYWSTVGMLIYAMNGCELVAPYVTKMKKPKSDFPKAMITLAIMT AFLTILGSFALGIYFDAYHIPNDLKMNGAYYVFDMVGKQFGMGKFLLYLWAWTSLLFNCA LVAVLLDAMTRMLISDTGDKYMPKFLRKKDKNGLPINGYILTVALSSFIMILGIFLPDMN DIFNWLLNLNSIISPGVTCWIFYSFMRVRKNSKKYPSKYVYIKNDKLAWLVGLALLVVTA VATILGFAPQDVKQGSGLWWYELIINIVAVIVLIGLGAILPGIRRREEEYGIAFDKSQWI WMGIIIIGSIILDVWLGSTKIPARITMIIVEAIAALIITWIVGRRKPQQATI Prediction of potential genes in microbial genomes Time: Wed May 25 05:04:48 2011 Seq name: gi|256541468|gb|ACPV01000006.1| Lactobacillus crispatus 125-2-CHN cont1.6, whole genome shotgun sequence Length of sequence - 21936 bp Number of predicted genes - 24, with homology - 24 Number of transcription units - 8, operones - 5 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 15 - 74 7.1 1 1 Op 1 . + CDS 223 - 408 318 ## PROTEIN SUPPORTED gi|227893236|ref|ZP_04011041.1| ribosomal protein S14 2 1 Op 2 . + CDS 421 - 1062 613 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases 3 1 Op 3 . + CDS 1133 - 1654 475 ## LCRIS_00736 integral membrane protein + Prom 1659 - 1718 3.1 4 1 Op 4 . + CDS 1739 - 2467 1069 ## COG0217 Uncharacterized conserved protein + Term 2480 - 2522 10.5 + Prom 2548 - 2607 6.4 5 2 Op 1 24/0.000 + CDS 2665 - 3639 924 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 6 2 Op 2 . + CDS 3608 - 4609 484 ## COG1459 Type II secretory pathway, component PulF 7 2 Op 3 . + CDS 4669 - 5010 459 ## LCRIS_00740 competence protein 8 2 Op 4 . + CDS 4985 - 5410 95 ## LCRIS_00741 prepilin-type cleavage/methylation protein 9 2 Op 5 . + CDS 5407 - 5676 304 ## LCRIS_00742 hypothetical protein 10 2 Op 6 . + CDS 5630 - 6157 410 ## LCRIS_00743 hypothetical protein 11 2 Op 7 . + CDS 6129 - 6293 100 ## LCRIS_00744 putative protein without homology 12 2 Op 8 7/0.000 + CDS 6352 - 7353 1086 ## COG0827 Adenine-specific DNA methylase 13 2 Op 9 . + CDS 7398 - 8582 1371 ## COG0282 Acetate kinase + Term 8747 - 8788 1.5 + Prom 9034 - 9093 5.8 14 3 Op 1 . + CDS 9186 - 10073 812 ## LBA0742 hypothetical protein 15 3 Op 2 . + CDS 10082 - 11245 972 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities + Prom 11250 - 11309 5.4 16 4 Op 1 . + CDS 11338 - 12300 1105 ## COG1482 Phosphomannose isomerase 17 4 Op 2 . + CDS 12336 - 12725 191 ## LCRIS_00750 integral membrane protein 18 4 Op 3 40/0.000 + CDS 12746 - 13450 912 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 19 4 Op 4 . + CDS 13471 - 14904 1150 ## COG0642 Signal transduction histidine kinase + Term 14909 - 14954 9.2 - Term 14897 - 14942 2.0 20 5 Tu 1 . - CDS 14946 - 17126 1954 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 17337 - 17396 9.4 + Prom 17185 - 17244 8.9 21 6 Op 1 . + CDS 17269 - 17871 223 ## COG4767 Glycopeptide antibiotics resistance protein + Prom 17880 - 17939 2.2 22 6 Op 2 . + CDS 17959 - 19296 1995 ## COG0166 Glucose-6-phosphate isomerase + Term 19360 - 19405 9.1 + Prom 19336 - 19395 2.1 23 7 Tu 1 . + CDS 19417 - 20790 1327 ## COG0477 Permeases of the major facilitator superfamily + Term 20990 - 21025 0.2 - Term 20835 - 20898 4.3 24 8 Tu 1 . - CDS 20899 - 21909 905 ## COG1680 Beta-lactamase class C and other penicillin binding proteins Predicted protein(s) >gi|256541468|gb|ACPV01000006.1| GENE 1 223 - 408 318 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227893236|ref|ZP_04011041.1| ribosomal protein S14 [Lactobacillus ultunensis DSM 16047] # 1 61 1 61 61 127 95 8e-29 MAKTSQIIRNKKETKFSTRQYTRCERCGRPHSVYRKFGLCRECMRELAHKGQLPGVKKAS W >gi|256541468|gb|ACPV01000006.1| GENE 2 421 - 1062 613 213 aa, chain + ## HITS:1 COG:L119013 KEGG:ns NR:ns ## COG: L119013 COG0702 # Protein_GI_number: 15673091 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 1 212 1 211 211 155 43.0 5e-38 MKVFVAGATGRVSKEVIKRLIDEGYEVIAGARRENTVEIISPNMRVQHLDFHDSLNKLTE ELGHPDAVIFVAGSRGKDLLQTDLNGAVKLMKAAEANGVKRYVQLSSAFALDQDKWAEIP SLASIIDYDIAKYFSDEWLIHNTNLDYTIIQPGNLMEKPATGKTSFTPEGGENSIDDVAQ VLVDSLKYDNTIHQVIIMHDGDTPIDEALSKVK >gi|256541468|gb|ACPV01000006.1| GENE 3 1133 - 1654 475 173 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00736 NR:ns ## KEGG: LCRIS_00736 # Name: not_defined # Def: integral membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 173 1 173 173 283 100.0 2e-75 MDKFHFTKREKIFLLLALLVLVALFISSSMTYQQQEIHDNKINRYFGWLENIVAGWDFTY GGRIHNVQVDGRAGLAQFVLRKMAHFGSYFLLGGFGYLGLRRIFKIKWVAPVLTWFMAIA FAAFDEYHQFLTGDRTPSVHDVMLDGAGALTAILLIMLVLFIKHRFFDQKKQV >gi|256541468|gb|ACPV01000006.1| GENE 4 1739 - 2467 1069 242 aa, chain + ## HITS:1 COG:lin1570 KEGG:ns NR:ns ## COG: lin1570 COG0217 # Protein_GI_number: 16800638 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 238 1 238 241 281 61.0 7e-76 MSGHSKWHNIQGRKNAQDAKRGKIFQKLSREIYMAAKSGGPDPDGNPTLRMVIDKARSNN MPKDNIKRAIKKAEGGSEEHYDEITYEGYAPGGVAVFVEALTDNKNRTASDVRVAFTRNG GSLGATGSVAYMFDRKGYIVIDRSTTDADEDQVLLDVMDAGGDDLQTSDDAYEIYTDPKQ FAGVRDALIKDGYKLADAELTMIPQNTTPVPADKKEQFEHLVDALEDSDDVQNVYTAAAD ED >gi|256541468|gb|ACPV01000006.1| GENE 5 2665 - 3639 924 324 aa, chain + ## HITS:1 COG:SP2053 KEGG:ns NR:ns ## COG: SP2053 COG2804 # Protein_GI_number: 15901873 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Streptococcus pneumoniae TIGR4 # 3 313 2 300 313 210 38.0 3e-54 MKIKEIVSELLIEAIKVKASDIFFFPKKENLMVKFRTGKGLIEYAGFTLETGKEIINFFK YSAQMDIAEHRRPQVGAMTYENEGHEYFLRLSSLGDFSDQESLVIRVIYGIDHSQYFIPE QLGTIEKLAKSRGLIITSGPTGSGKTTTMYEIAKKMSQNKVVMTIEDPVEIHESSFLQAQ VNNEAGIDYQNLLKAALRHRPDILIIGEIRDQGTARLAVDAALSGHLVFATVHAKSTLQT ISRLEGLGIRCDELTNCLTAVSYQRLLVSQGKLKCLMDIAADSLLKKELGKSVRGEFVNW QENLERLWKGGEINHEVYWQFQKG >gi|256541468|gb|ACPV01000006.1| GENE 6 3608 - 4609 484 333 aa, chain + ## HITS:1 COG:SA1373 KEGG:ns NR:ns ## COG: SA1373 COG1459 # Protein_GI_number: 15927123 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Staphylococcus aureus N315 # 6 333 12 355 356 94 25.0 4e-19 MKYIGNSKKDKLNGEEQLAFLDYLKHSLDNGFSLLNSIELMPALWPKRRQLMERMASSMK EGASFSTELLKLGFSKTTVTQVNLALQQGNLVECLQHLATLNRLKQEQMKKLRAELSYPL VLAIMMVILLVFMQSFISTQFSDSSDHSGDMVMIGLIIIVLLGLYFFAKIVTLLNKQDYS SMKKLSKYPLIGQVVMLYIHYLLVYDIGLLLASGFSLQRMCEYAADQEKGSLQQALGQKI GHDLAEGKNLEEIINAEDFLPNSLLVLLQTGSERKSLSKRCLLLGRSLFLDLTEKIEKLV VNVQPACFILIGLCIIGMYLKLLLPMYSMMQGL >gi|256541468|gb|ACPV01000006.1| GENE 7 4669 - 5010 459 113 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00740 NR:ns ## KEGG: LCRIS_00740 # Name: comGC # Def: competence protein # Organism: L.crispatus # Pathway: not_defined # 1 113 1 113 113 146 100.0 2e-34 MKEKMKKYLANIMAKRRKQEGFTLIEMVVVIAIIVILILLIVPNLINQKKNAETKTADAF RTTVQTQVELYKDKYGEPKDFEDLKKDDYLTGDQITKAKKNFTLDSGEVVEKK >gi|256541468|gb|ACPV01000006.1| GENE 8 4985 - 5410 95 141 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00741 NR:ns ## KEGG: LCRIS_00741 # Name: comGD # Def: prepilin-type cleavage/methylation protein # Organism: L.crispatus # Pathway: not_defined # 5 141 1 137 137 262 99.0 2e-69 MAKLLKRNKLAGFSLLEVIITLGVCCGILLIGSLQLKRYQEKLIFDNTVKRVTTALDQTS RYSTIKEVTIGVSYLARSNQILFSGGKYHKSIPVDQNIKITGLDHFKFNLTGYSKPGTVT FSGYGMEKSLKYQMLWGRVAE >gi|256541468|gb|ACPV01000006.1| GENE 9 5407 - 5676 304 89 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00742 NR:ns ## KEGG: LCRIS_00742 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 89 1 89 89 143 98.0 2e-33 MIKVKGFLVIESFIAIIIAVIAVSCFYITVAENQKNGREMELKTDRAYAYHILTKTDLEQ VTVHDRIYQKAGHNHVWDATTKQTFAVKE >gi|256541468|gb|ACPV01000006.1| GENE 10 5630 - 6157 410 175 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00743 NR:ns ## KEGG: LCRIS_00743 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 19 175 1 157 157 249 98.0 3e-65 MFGMQRLNKLLRSKSKGFMLAEAMFSLLITMMVLLILQNLLLSVKKANLNQNQHVNEVAY AYVQLENFMRADKIKAVYPVTKLAISNSASFKCIDQKGDATTYRIEYYKKNVLKVSGAGK GYMPLLFNVEKAAFKTTKDSIIIRVTEKNKGVSDLVFQLDEEQEKKNAKTKEKDA >gi|256541468|gb|ACPV01000006.1| GENE 11 6129 - 6293 100 54 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00744 NR:ns ## KEGG: LCRIS_00744 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 54 1 54 54 90 100.0 2e-17 MLKPKKKTHNVKGSALLSSVLVLMTTLLFIKMYQDIYHASMENNRLIIECLTDD >gi|256541468|gb|ACPV01000006.1| GENE 12 6352 - 7353 1086 333 aa, chain + ## HITS:1 COG:BS_ytxK KEGG:ns NR:ns ## COG: BS_ytxK COG0827 # Protein_GI_number: 16080000 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Bacillus subtilis # 18 330 20 327 329 174 33.0 3e-43 MENFEKLFNQFLDCVQTLQTALNVSFTEALVETFDNLESGKIKVENGAPDEKTVAELSQK YQAIDYDEISQKEKAQVFTFLTLKAVNDDGFDVNQMPTPPAIATVVAMLMHKLLKDQKME IVDPAVGTGNLLFSIISQLKALNHSKDNYQLVGIDNDEDMLSLTDVAAHLNNIDIELYHQ DALMPWMCPNADAIVSDLPVGYYPVDENAKNFENQAKKGHSFAHLLLIEQIINNLKPNGY AFLVVPKSILSGKIGADFMPWLTKKVYLKAIVELPDDMFKNKFNQKSVLVFQNHGDEAKA SEVLLTKLGSLKKEEALIQFNVKLNEWYAKINH >gi|256541468|gb|ACPV01000006.1| GENE 13 7398 - 8582 1371 394 aa, chain + ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 1 390 1 393 395 415 53.0 1e-115 MKKVLAINSGSSSFKYKLFSLPDEKVLAKGMADRVGLEDSSFEIKLADGTKHVEKTEIPD QEAAVSLLIKFLKGYHVVEELTEIVGVGHRVVNGGEYFKDSTIITKENLPKIYELSDYAP LHNPAEARGIEAFMNVLPNVPEVAVFDTTYHRNLDPVHYLYSLPYEYYEKYGVRKYGAHG TSIRYTAPRAAKLLGKDLKDLKLVICHLGSGASITAVKDGKSYDTSMGFSPIAGITMATR TGDIDPSLVQHLMKVEHKSMDEMIYIMNNKSGLLGLSGISPDMRDVRESDSERAKLARKI FINRIIRYVGAYIAEMGGVDAIIFTAGIGEHDTGVRKAVLDAFAYMGVVVDNEANESVSE GLITKTDSKVAGMVIPTNEELMIERDVVRLTNID >gi|256541468|gb|ACPV01000006.1| GENE 14 9186 - 10073 812 295 aa, chain + ## HITS:1 COG:no KEGG:LBA0742 NR:ns ## KEGG: LBA0742 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 295 2 296 296 461 81.0 1e-128 MEYKNKYFAGERILYGLTDAILDGITFGSGESPLKEAKNIRLKNSIFKWKYPLWYDENVK VENTTFETMSRSGIWYTKNISIKNSALQAPKLFRRTSHIILDNVHFANAEETMWTCNDIK ITNSQINGDYFGKDSQNIYLDHVSVVGNYVFDGAENIEVHNSTFISKDAFWNCNNVTIYD SIIDGEYLAWNTNNITLINCKIESDQGLNYIDQLEIKNGSLIHTDLAFEYVSNLDVELNT KIDSIKNPISGKITVPEIGTLIIDPDKVDPSKTELDCPKIGTKIVHSDTNQTPKD >gi|256541468|gb|ACPV01000006.1| GENE 15 10082 - 11245 972 387 aa, chain + ## HITS:1 COG:CAC2970 KEGG:ns NR:ns ## COG: CAC2970 COG1168 # Protein_GI_number: 15896223 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Clostridium acetobutylicum # 3 384 2 383 384 302 34.0 6e-82 MQYDFENAPDRSKTDSVKWDVKSDELPMWIADMDFKTAPEIIEAMQQKLTLGAFGYEFPQ ADYFNAVADWYETEHNHRPQTNWMIFTTGVVPAISSIVRRISHIGDNVLVQEPVYNIFYN SILNNGRHVLSSDLAFDGKSYSINWADLEQKLAEPLTTLMIFCNPHNPVGKVWTSEEVQK IADLCHQYHVTLLSDEIHGDLVRQGPDYTPAFSVTGEAQNSVISLVSPSKTFNVAALHSA TAIVPNENLRNMVNRGLNSDEVAEPNLLAIPATIAAYEQGHDWLNALKKQLKQNFAYVQN FIEKNIPEVQIISGNATYLMWIDVQKISTDSQELAEFIRQETGLIISAGSVYRGNGHDFI RINLACPLTMVKDGMQRLATGIRKYNK >gi|256541468|gb|ACPV01000006.1| GENE 16 11338 - 12300 1105 320 aa, chain + ## HITS:1 COG:lin2215 KEGG:ns NR:ns ## COG: lin2215 COG1482 # Protein_GI_number: 16801280 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Listeria innocua # 2 317 3 315 318 311 51.0 1e-84 MEPLFLTPYFRPKIWGGRKLDDIFHYDIPEGKVGEAWIISGYKDDASTVTDGPLKGMSLR DVYLKHPELFGNPKAKEFPLLVKFLDANDNLSVQVHPDDDYARKVENDSGKTESWYVMQA DPGAYIIYGHHAKSREELADMIHKGEWDKLLRKVPVKAGDFFYVLAGTIHALTKGCLVIE TQQSSDVTYRLYDYDRVGKDGKKRELHTQKSIDVTTVPHVDPKLDVKTSQDQDAEIKTLV EPPLSPHFYLWQIDLDGTWKTGLKDHPYLLVSVIKGEGKLEADGKSYDLKMGTNLIIPNE MKNFTFTGKMRIVMSAPGEE >gi|256541468|gb|ACPV01000006.1| GENE 17 12336 - 12725 191 129 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00750 NR:ns ## KEGG: LCRIS_00750 # Name: not_defined # Def: integral membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 129 1 129 129 246 99.0 1e-64 MIYVACGLVMVAVGLIWLITPAKRPNRIYGYLSYLAQVNQDSFKFAQKRASWYCILFGFI QALLGVIIHYLNWDRYFLIWLLTFYLFILLPIVYTEKSLKTFLSKRHELPHDYVDPDQVK HKRTKGFRD >gi|256541468|gb|ACPV01000006.1| GENE 18 12746 - 13450 912 234 aa, chain + ## HITS:1 COG:BS_yclJ KEGG:ns NR:ns ## COG: BS_yclJ COG0745 # Protein_GI_number: 16077443 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 1 230 5 226 227 230 53.0 2e-60 MVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDGIQV AKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVMME EEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQVFSR DQLLELVWGYEYYGEERTVDAHIKKLRQKLEKVGAKVIQTVWGVGYKFDDSQVK >gi|256541468|gb|ACPV01000006.1| GENE 19 13471 - 14904 1150 477 aa, chain + ## HITS:1 COG:lin1543 KEGG:ns NR:ns ## COG: lin1543 COG0642 # Protein_GI_number: 16800611 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 4 463 17 469 479 282 37.0 8e-76 MLSFLLIIVTTISIIGYSEIGYARNQAYTQNYQRMESYANSLGNLAEADSQNGTALLSNN FLNQLEYVLRGDDAHLRIFNDKNEQIYPKTKARIQLSQEVFTTLKNGQEIRIQNNHNENS PISSTKDAYTGVLVPWMNGKNLVGIVWIGSRVKHVERPILMAKRNLLRALLITVAVGLLL SFIISYYSTKRIKRLSRATQKVASGNFNVQIEHKDSDEIDQLAENFNKMVQALKQSNEEV KAQEERRDQFMADAAHEMRTPLTTINGILEGLQYDAIPEDSKPKSIALMQRETKRLIRLV NENLDYEKIRNNQIMLVKTNFNATIILHDLKSQLKQNATKANDELVVEAPDQLPIYADRD RFTQVMVNLVQNAIQFTHDGKIIISGKRIEHGTQLSVKDNGIGMSKNQTKYIFERFFKAD PSRARMGTGESGLGLAIVSSLIKQHGGKVEVFSAPGKGSTFTVTFYDKGYEQFVAKN >gi|256541468|gb|ACPV01000006.1| GENE 20 14946 - 17126 1954 726 aa, chain - ## HITS:1 COG:L13927 KEGG:ns NR:ns ## COG: L13927 COG1368 # Protein_GI_number: 15672787 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Lactococcus lactis # 4 684 11 700 722 566 44.0 1e-161 MEKKKIISFIQTRTGFLTLLVVCFWLKYIFAAYFDFNLGLSDPYQHFIMWLSPVGSAIIL ISFGFYIPKPLISYITMLILDFANTALLFANIIYYRQFSDFLTIKTMSNVGKVSQGLGKS TVALLHPTDIIIWIDLIVIVTLLIIHKIKIDQRSYGLSTPFAITSVGAFVLTLNIFLAET SRPRLLRNTFDRSYVVKYLGIDTFTAYDCFKSAQNVQVTKNANAADLNQILTFTKKQNAA PSSSYFGIEKKRNVIIIHLESFQQFLINLKVNGKEVTPFLNSLYQNKHTLSFNNFYHQVG LGRTSDAENMLETSTYGIPDGSLFTSLGSENTFQAAPQILRQDGYTSAVFHGNVGSFWNR NDVYKNMGYNYFFDKNYYSSQSKDASGYGLKDKLLFAESVKYLEQMQQPFYAKFITVTNH IPFNLDKEDKDPNFKTTNTADQTINNYFETAHYLDEALREFFHYLKSSGLYKNSMVVIYG DHYGLSNSENETLAPIIGESSDTWNTYNNVQMQRVPFMIHANNLKGKINHEIAGEIDVLP TLMHLLGINNKNYVQFGSDMLSPKRQNWIVFRNGTIVSSRYIIVGAKGIKGTVYDRVSGK QIINFTPQEKKEISELAQKAKASLDYSDLLNNHNLLRFYTPTGFVPADPTQFDYSVNYQK MIAIRNELAGNSTSLYSRHRGTTTNLYRTDAAELKDRKQEITQVPDSVKNIKENTKNKNS SENTNN >gi|256541468|gb|ACPV01000006.1| GENE 21 17269 - 17871 223 200 aa, chain + ## HITS:1 COG:BH2294 KEGG:ns NR:ns ## COG: BH2294 COG4767 # Protein_GI_number: 15614857 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Bacillus halodurans # 67 194 13 139 163 59 33.0 3e-09 MLFLGPLYSFLAKQYATNINHFALVKLTLLALDKTIFYFLIFAVLRLIWLLLVRRRRSIR SEASVWVFSFYIILVLMLTTFRNTYFPWQLDFNFSRPLSDINLVFMKETWKLVYAPSHLD FFYNSFGNVLCFVPFGIFFPIVFSKRATFLRTVLMGMLFSVGIETLQFLLVTGVSDIDDV FFNTCGAILGYVIFKIVKKA >gi|256541468|gb|ACPV01000006.1| GENE 22 17959 - 19296 1995 445 aa, chain + ## HITS:1 COG:SP2070 KEGG:ns NR:ns ## COG: SP2070 COG0166 # Protein_GI_number: 15901889 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 1 445 1 449 449 593 66.0 1e-169 MSLIKFDSSKLTQFVHENELSEMQAMVNAANTELRDGTGAGNDFRGWLNLPVDYDKDEFA RIKKAAKKIQSDSEVLICIGIGGSYLGAQAAIEFLNSNFYGKEKNGMPTVVFCGNSLSGS YLYDLIEWLGDKDFSVNVISKSGTTTEPSVAFRIFKDKLIKKYGKEEAAKRIYATTDRQK GALKTEADAEGYEEFVVPDDVGGRYSVLSAVGLLPIAASGADIDELMKGAADARADYTDT DLSKATPYQYAALRNILYRKGYTTEIVENYEPSLRMFGEWCKQLMGESEGKDQKGIYPSS ANFTTDLHSLGQYIQEGLRNLFETVIRVENPRHDVKIPGDEKNLDQLNFLEGKSLNYVND RAYEGVVLAHTDGGVPVMTVNIPDQSAHTLGYMIYFFELAIAISGYLNGINPFNQPGVEA YKRNMFGLLNKPGYENLHDDLAKRL >gi|256541468|gb|ACPV01000006.1| GENE 23 19417 - 20790 1327 457 aa, chain + ## HITS:1 COG:L180636 KEGG:ns NR:ns ## COG: L180636 COG0477 # Protein_GI_number: 15673521 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 2 449 13 448 457 260 37.0 4e-69 MKENTKNVLAVLSAAFMSFVGILTETSLNVTFPTMMKQFGVGLDIIQWTTTGYLLAIAII MICSSYLNERFTARQLFIVACVGFMIGSVISAVAPNFPILLLGRLISALGAGLSTPLMFN LVTEVMPREKWGVYMGIAGLVVAMAPTLGPAFGGITTFYLNWRWIFGFVTIFAIIVFVAG LFVVGKYHEQTKNSFDWLSFIVLAIAFITLTLGVNQISNGFANPLMWILLIVTAILIWLF VRLSKKSSKKLLDLAVFKQKAFVYGALAYFLLQFNNIGISFVLPNYIQIVGKQTSLVGGL ILLPGSIIAGLLNPYFGSLYDKKGAKLPLYLGGFLMAISCLLFAIFGLNLTVMMIIIIYG IMMLGHRMSFSNTLAEALKVEKGASRADATAVCQTSQQLAGSVGTTILAAIMSIWPKKGA ASYALATAQGSQAAFYFTLLMALIILISYWKMFKAEK >gi|256541468|gb|ACPV01000006.1| GENE 24 20899 - 21909 905 336 aa, chain - ## HITS:1 COG:L114054 KEGG:ns NR:ns ## COG: L114054 COG1680 # Protein_GI_number: 15674027 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Lactococcus lactis # 10 331 10 313 328 189 35.0 8e-48 MIDFNKTQHLIESMVFERVVPGVNYTFIKNKQIFTSTTGFASIYPEVTQLSPFAEYDLAS LTKVLATENVLLKLYDQGKLNFTEPLQQFIPEFKDPRVRLYHLLTHTSGIRGWIPHRDKL DHDALLQAIINLPVTDEFEHKMRYADTNFILLGLVIKKIFGKPVQEVVTEQVLNQMPLEN TTFSPQKDDCVPTALVDGHVLQGIPHDPKARQLGIDCGSAGLFSNLQDLVTFAQGYLGLK DVLPYSQKTVSQLFDNKNPQGIKPRSWGWDLRFDPKQNYPIILHTGFTGTLIILDRIKRS GLILLTNRVHPTGHNTFFLAMREKIIHSFINENAKI Prediction of potential genes in microbial genomes Time: Wed May 25 05:05:31 2011 Seq name: gi|256541467|gb|ACPV01000007.1| Lactobacillus crispatus 125-2-CHN cont1.7, whole genome shotgun sequence Length of sequence - 70231 bp Number of predicted genes - 75, with homology - 74 Number of transcription units - 25, operones - 15 average op.length - 4.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 60 - 131 56.4 # Glu CTC 0 0 + TRNA 137 - 209 59.0 # Gln CTG 0 0 - Term 246 - 282 5.8 1 1 Tu 1 . - CDS 286 - 1644 1514 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Prom 1724 - 1783 8.0 + Prom 1683 - 1742 4.9 2 2 Op 1 3/0.000 + CDS 1774 - 2373 599 ## COG1435 Thymidine kinase 3 2 Op 2 32/0.000 + CDS 2390 - 3478 1437 ## COG0216 Protein chain release factor A 4 2 Op 3 10/0.000 + CDS 3471 - 4316 312 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase 5 2 Op 4 . + CDS 4319 - 5323 1072 ## COG0009 Putative translation factor (SUA5) + Term 5333 - 5371 7.1 + Prom 5325 - 5384 5.8 6 3 Tu 1 . + CDS 5408 - 6037 913 ## COG0035 Uracil phosphoribosyltransferase + Term 6075 - 6123 5.2 + Prom 6057 - 6116 3.7 7 4 Op 1 40/0.000 + CDS 6160 - 6873 612 ## COG0356 F0F1-type ATP synthase, subunit a 8 4 Op 2 37/0.000 + CDS 6894 - 7118 407 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 9 4 Op 3 38/0.000 + CDS 7175 - 7681 627 ## COG0711 F0F1-type ATP synthase, subunit b 10 4 Op 4 41/0.000 + CDS 7681 - 8229 584 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 11 4 Op 5 42/0.000 + CDS 8244 - 9755 1766 ## COG0056 F0F1-type ATP synthase, alpha subunit 12 4 Op 6 42/0.000 + CDS 9766 - 10728 1078 ## COG0224 F0F1-type ATP synthase, gamma subunit 13 4 Op 7 42/0.000 + CDS 10751 - 12190 1698 ## COG0055 F0F1-type ATP synthase, beta subunit 14 4 Op 8 . + CDS 12202 - 12642 592 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) + Term 12652 - 12695 2.2 15 5 Op 1 . + CDS 12709 - 12939 268 ## LCRIS_00773 membrane protein + Prom 12942 - 13001 5.0 16 5 Op 2 . + CDS 13023 - 14012 1119 ## COG1077 Actin-like ATPase involved in cell morphogenesis 17 6 Op 1 . + CDS 14125 - 14319 168 ## COG0759 Uncharacterized conserved protein 18 6 Op 2 . + CDS 14328 - 14555 354 ## LCRIS_00776 hypothetical protein 19 6 Op 3 . + CDS 14577 - 15770 1039 ## COG0772 Bacterial cell division membrane protein + Term 15789 - 15831 7.1 - Term 15776 - 15819 9.2 20 7 Op 1 . - CDS 15850 - 16314 726 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 21 7 Op 2 . - CDS 16375 - 16656 282 ## LCRIS_00779 hypothetical protein - Prom 16703 - 16762 3.6 - Term 16712 - 16764 -0.6 22 8 Op 1 . - CDS 16967 - 18274 1226 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase 23 8 Op 2 . - CDS 18275 - 18742 514 ## LCRIS_00781 YueI protein - Prom 18763 - 18822 7.1 - Term 18772 - 18813 7.4 24 9 Tu 1 . - CDS 18834 - 19541 1157 ## PROTEIN SUPPORTED gi|227903670|ref|ZP_04021475.1| 30S ribosomal protein S4 - Prom 19712 - 19771 7.2 + Prom 19650 - 19709 6.8 25 10 Op 1 3/0.000 + CDS 19730 - 21442 1761 ## COG4477 Negative regulator of septation ring formation + Term 21487 - 21516 1.4 26 10 Op 2 7/0.000 + CDS 21524 - 22690 1030 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 27 10 Op 3 . + CDS 22690 - 23907 1383 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase + Term 23969 - 24016 -0.7 + Prom 24049 - 24108 8.1 28 11 Tu 1 . + CDS 24134 - 25390 744 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen + Term 25409 - 25455 8.4 + Prom 25433 - 25492 5.8 29 12 Tu 1 . + CDS 25524 - 26228 599 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Prom 26245 - 26304 4.8 30 13 Op 1 . + CDS 26329 - 26634 202 ## LCRIS_00802 hypothetical protein 31 13 Op 2 . + CDS 26555 - 26725 83 ## LCRIS_00802 hypothetical protein + Prom 26744 - 26803 6.2 32 14 Op 1 . + CDS 26865 - 27284 407 ## LCRIS_00803 dolichyl-phosphate beta-D-mannosyltransferase 33 14 Op 2 . + CDS 27284 - 28213 834 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Term 28233 - 28274 5.2 + Prom 28224 - 28283 11.6 34 15 Op 1 . + CDS 28361 - 28873 347 ## LCRIS_00805 hypothetical protein 35 15 Op 2 . + CDS 28870 - 29145 334 ## LCRIS_00806 putative protein without homology 36 15 Op 3 . + CDS 29179 - 29385 294 ## LCRIS_00807 putative protein without homology + Term 29509 - 29559 8.0 + Prom 29436 - 29495 4.5 37 16 Tu 1 . + CDS 29591 - 32206 2998 ## COG0474 Cation transport ATPase + Term 32214 - 32271 15.1 + Prom 32252 - 32311 6.4 38 17 Op 1 . + CDS 32339 - 33547 946 ## LAF_0101 hypothetical protein 39 17 Op 2 . + CDS 33540 - 34076 402 ## gi|227877307|ref|ZP_03995380.1| conserved hypothetical protein + Prom 34093 - 34152 6.5 40 18 Op 1 8/0.000 + CDS 34392 - 37031 3088 ## COG0525 Valyl-tRNA synthetase 41 18 Op 2 . + CDS 37032 - 38315 985 ## COG0285 Folylpolyglutamate synthase 42 18 Op 3 . + CDS 38293 - 38970 680 ## COG0637 Predicted phosphatase/phosphohexomutase 43 18 Op 4 4/0.000 + CDS 39006 - 39638 416 ## COG2003 DNA repair proteins + Prom 39640 - 39699 1.8 44 18 Op 5 22/0.000 + CDS 39724 - 40728 1320 ## COG1077 Actin-like ATPase involved in cell morphogenesis + Term 40737 - 40762 -0.5 45 18 Op 6 . + CDS 40774 - 41625 695 ## COG1792 Cell shape-determining protein 46 18 Op 7 . + CDS 41625 - 42164 475 ## LCRIS_00819 rod shape-determining protein MreD + Term 42169 - 42208 7.1 - Term 42157 - 42195 3.1 47 19 Tu 1 . - CDS 42206 - 42331 60 ## - Prom 42352 - 42411 4.5 + Prom 42344 - 42403 9.2 48 20 Tu 1 . + CDS 42425 - 42754 262 ## LCRIS_00820 hypothetical protein + Term 42780 - 42819 4.1 + Prom 42798 - 42857 11.8 49 21 Op 1 29/0.000 + CDS 42925 - 43356 370 ## COG2001 Uncharacterized protein conserved in bacteria 50 21 Op 2 . + CDS 43362 - 44309 630 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 51 21 Op 3 . + CDS 44323 - 44685 391 ## LCRIS_00823 cell division protein FtsL 52 21 Op 4 4/0.000 + CDS 44685 - 46844 2121 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 53 21 Op 5 28/0.000 + CDS 46851 - 47819 1093 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 54 21 Op 6 4/0.000 + CDS 47827 - 49206 1664 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 55 21 Op 7 3/0.000 + CDS 49208 - 50314 1147 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 56 21 Op 8 25/0.000 + CDS 50331 - 51188 591 ## COG1589 Cell division septal protein 57 21 Op 9 35/0.000 + CDS 51251 - 52603 1320 ## COG0849 Actin-like ATPase involved in cell division 58 21 Op 10 . + CDS 52618 - 53961 1748 ## COG0206 Cell division GTPase 59 21 Op 11 . + CDS 53979 - 54416 451 ## COG1799 Uncharacterized protein conserved in bacteria 60 21 Op 12 . + CDS 54416 - 54718 234 ## LCRIS_00832 cell division membrane protein 61 21 Op 13 6/0.000 + CDS 54718 - 55518 1371 ## PROTEIN SUPPORTED gi|227877329|ref|ZP_03995402.1| ribosomal protein S4e 62 21 Op 14 6/0.000 + CDS 55524 - 56318 818 ## COG3599 Cell division initiation protein + Term 56493 - 56530 7.1 + Prom 56412 - 56471 4.0 63 22 Op 1 . + CDS 56546 - 59347 3243 ## COG0060 Isoleucyl-tRNA synthetase 64 22 Op 2 . + CDS 59347 - 59550 311 ## LCRIS_00836 cold shock protein 65 22 Op 3 . + CDS 59566 - 60135 531 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 66 22 Op 4 . + CDS 60138 - 60452 205 ## LCRIS_00838 putative protein without homology 67 22 Op 5 . + CDS 60471 - 61166 795 ## COG0775 Nucleoside phosphorylase 68 22 Op 6 . + CDS 61169 - 62326 1137 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 69 22 Op 7 . + CDS 62374 - 62715 491 ## LCRIS_00841 hypothetical protein 70 22 Op 8 . + CDS 62723 - 63850 1428 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain + Term 63858 - 63905 8.3 + Prom 63854 - 63913 4.5 71 23 Op 1 . + CDS 63943 - 64602 740 ## COG0406 Fructose-2,6-bisphosphatase 72 23 Op 2 . + CDS 64602 - 65252 625 ## LCRIS_00844 TPR repeat protein 73 23 Op 3 . + CDS 65245 - 67614 2544 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Term 67623 - 67662 1.1 + Prom 67626 - 67685 7.9 74 24 Tu 1 . + CDS 67721 - 69358 999 ## LCRIS_00846 hypothetical protein + Term 69363 - 69396 -0.9 - Term 69350 - 69383 -0.9 75 25 Tu 1 . - CDS 69384 - 70229 740 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Predicted protein(s) >gi|256541467|gb|ACPV01000007.1| GENE 1 286 - 1644 1514 452 aa, chain - ## HITS:1 COG:L114717 KEGG:ns NR:ns ## COG: L114717 COG0769 # Protein_GI_number: 15673088 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 3 444 1 440 449 436 48.0 1e-122 MYMSFKSGIAKVAGKSSYWFLHNALKGGTSFPGKLAMKIDPEVLNSLAKGYETVIVTGTN GKTMTTALIVEALKKKYGDVLTNPSGSNMQQGIVTAFLAHKHKRVKRKIAVLEVDEANVK MVTKLLHPSVFVLTNIFRDQMDRYGEIYTTYDKIVNGIKLAPDATIIANGDASIFSSVEL PNKKIFYGFKLPDDKPENDFKAPVNTDGVLCPKCDHILHYHERIYANLGDFFCPNCGYHR PDLTFTVNKIIDQTPNSSTFQMGNKQYSINIGGTYNIYNALAAYSVARHFGLTEAEVAQA FAENKRIFGRQELIHYGDKDIDLILVKNPVGLDEVLHMLNTEKDDYSLVALLNANHADGI DTSWIWDADFEGLDKEKIKKILVGGQRWHDMGFRLEIAGFDPGQMSTNPDDDSLIEEIKK LPTKKVYILSTYTAMLALRKKMAEKKIIKAGM >gi|256541467|gb|ACPV01000007.1| GENE 2 1774 - 2373 599 199 aa, chain + ## HITS:1 COG:SPy1140 KEGG:ns NR:ns ## COG: SPy1140 COG1435 # Protein_GI_number: 15675117 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Streptococcus pyogenes M1 GAS # 1 197 1 189 189 266 61.0 2e-71 MAQLFFRYGAMSSGKTIEILKVAHNYEAQGRKIALMTSGLDNRSGVGTVASRIGLHREAI PITADMNLFDYIKKMNKADVADGDGKIACVLIDEAQFLKRHHVLECAKIVDVFNIPVMTF GLKNDFQNHLFEGSENLLIFADKIEEMKTICHYCGHKATMNLRINNGKPVYEGEQVQIGG DESYYPVCRYHYFHPGVER >gi|256541467|gb|ACPV01000007.1| GENE 3 2390 - 3478 1437 362 aa, chain + ## HITS:1 COG:L0373 KEGG:ns NR:ns ## COG: L0373 COG0216 # Protein_GI_number: 15672577 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Lactococcus lactis # 7 357 4 355 357 404 60.0 1e-112 MDKVMAQLEGLVAHYEELQEMMADPEVINDTKRYMEISKEEADLREVVQKYKKYKEDKKE IEDNKEIISSETDPDLIEMAKEENSEIEKEIPELEDQIKILMLPKDPNDDKDIIMEIRGA AGGDEASLFAGDLLRMYEKYAERQNWKVSMIDSEPTEVGGYKRVAIMITGDKVYSKLKYE NGAHRVQRIPVTESQGRVHTSTATVAVMPEYEQVDIDIDPKDIRVDVYRSSGAGGQHINK TSSAVRMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDYYESQNQAQYDAKRKNAVG TGDRSERIRTYNYPQNRVTDHRIGLTINKLDRVMNGELDEIIDALILYNQTKQLEELADQ NA >gi|256541467|gb|ACPV01000007.1| GENE 4 3471 - 4316 312 281 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 24 278 39 289 294 124 34 1e-27 MPKMTLKQMRIKAGESAENARPEDVDYVLAERLGLTPSEFELKQEMDLTADQIKQANKDI EKLAKGISPQYILGYAWFLGYKIMVQRGVLIPRFETEELVEWALQTLKSGDQVLDLGTGS GCITVALAKEAQKKGITDLTLYASDVTDTALRTSEENFLTYDLDVTTRKANVLLGLEEFD KIISNPPYIKTSEKNVMDENVLQNEPKEALFAGKDGLDFYKKFAKQVREHLNSHGEFFLE FGFSEEEQLKELFAKELPDFEIEFRKDMAGKPRMVHGRWQK >gi|256541467|gb|ACPV01000007.1| GENE 5 4319 - 5323 1072 334 aa, chain + ## HITS:1 COG:lin2685 KEGG:ns NR:ns ## COG: lin2685 COG0009 # Protein_GI_number: 16801746 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Listeria innocua # 15 334 21 345 345 269 46.0 7e-72 MMETKIFKKDQINDAVKLLAKGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL IVTVSDEEMMAKYAKEVPERAKKLIKHFWPGPLTLLLFVKPGTLPDAVTGGLDTVAFRCP DDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVYHDLKGKIAGIIDDGPTRVGLESTI IDLSVETPIVLRPGEITPEELSEVLGEKVLINTGKVSDKDIPKAPGMKYRHYAPSEPVVV VDDPADFAKIDFNEKTGVAALAPVLAKINLPQANKFDLGNNLVDADHNLFGGLRYFDDQD DIETIYVQGFHEGEESLAYMNRLNKAAGGHHFNK >gi|256541467|gb|ACPV01000007.1| GENE 6 5408 - 6037 913 209 aa, chain + ## HITS:1 COG:SP0745 KEGG:ns NR:ns ## COG: SP0745 COG0035 # Protein_GI_number: 15900640 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 209 274 66.0 9e-74 MGKFVVLDHPLIQHKLTIIRRKDTGSNEFRRIVGEIGGLMTYEITRDLPLEDVEIETPMG KTVQKEIAGKKLTIVPILRAGMGMLNGVLEMVPSAKIAVIGMYRDEKTLKPHEYFFKAPK DIAERECLVVDPMLATGGSANDAIAALKKRGVKEIKLAVLVAAPEGIKAVQEANPDVDIY AAAEDDKLMDNGYIFPGLGDAGDRLFGTK >gi|256541467|gb|ACPV01000007.1| GENE 7 6160 - 6873 612 237 aa, chain + ## HITS:1 COG:lin2679 KEGG:ns NR:ns ## COG: lin2679 COG0356 # Protein_GI_number: 16801740 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Listeria innocua # 1 237 1 237 238 174 41.0 2e-43 MEKSFVFKFMGLNFELSGIIGSTLMVLAVLFICIWLSRKVEMKPNKRQNVFEYLLDFTNG IVKDNVSDKDAQNHLSLYAFVLFLFIWFMNQLGMFMEVKVDDWMFIKSPTADPVATMSFA MMTLLLSFTFGVQRFGVGGYLKSYTQPVGFMLPINLIEEFTNFLTLSLRLYGNIYAGEVL LTLIGNDLAHAGGPFTLVLAAPLAMIWQGFSVFIGSIQAYVFVTLSMVYIGKKVTTE >gi|256541467|gb|ACPV01000007.1| GENE 8 6894 - 7118 407 74 aa, chain + ## HITS:1 COG:SA1910 KEGG:ns NR:ns ## COG: SA1910 COG0636 # Protein_GI_number: 15927682 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Staphylococcus aureus N315 # 8 70 4 66 70 60 58.0 9e-10 MSEAFKYLAASIAAGLAALAASLGNGKVISKTLEGMARQPESAGNLRATMFIGVGLIEAV PILAIVVAFLILFL >gi|256541467|gb|ACPV01000007.1| GENE 9 7175 - 7681 627 168 aa, chain + ## HITS:1 COG:SP1512 KEGG:ns NR:ns ## COG: SP1512 COG0711 # Protein_GI_number: 15901359 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Streptococcus pneumoniae TIGR4 # 14 168 9 163 164 104 39.0 8e-23 MTIQTLFAASHIYLGNAIWYLICFAILMLLIKHFAWGPVSDMMEKRRQKVIDDLDSAASE RKKAETLANEREAALKNSRQEATQILSDAKSNAQNTSKEIVANANEDAAAIRKKANEDAA QAKADALNSARDQVADISVAIAEKVIAKNLSAKDQKDLVDQFIKGLDD >gi|256541467|gb|ACPV01000007.1| GENE 10 7681 - 8229 584 182 aa, chain + ## HITS:1 COG:lin2676 KEGG:ns NR:ns ## COG: lin2676 COG0712 # Protein_GI_number: 16801737 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Listeria innocua # 7 178 6 177 179 88 33.0 5e-18 MALSREEIAARYGAALFGYAQDNDALDTVYNEMVELKKAAEANPQIISVLSDPILSSKDK KDLLTAIEKDFSDEVQNFLNLLFKYDRFADLIDIIDRFVLLYDNEKKVASGVATTAVKLD DDQLKRLGESFAKKYNLNVVRLENKVDPSILGGVVLQVEDRVIDGSVKNKLKKIRAQIID KN >gi|256541467|gb|ACPV01000007.1| GENE 11 8244 - 9755 1766 503 aa, chain + ## HITS:1 COG:lin2675 KEGG:ns NR:ns ## COG: lin2675 COG0056 # Protein_GI_number: 16801736 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Listeria innocua # 1 503 1 503 504 762 75.0 0 MSIKAEEISSLIKQQLEHYDDKLDISEVGVVTYVGDGIARAHGLNDVLSGELLKFDNGSY GIAQNLESNDVGIIILGQFDNIREGDRVQRTGRIMEVPVGDALIGRVVNPLGQPVDGLGE IKTDKSRPIEAKAPGVMDRQSVDQPLQTGIKAIDALVPIGRGQRELIIGDRKTGKTSLAI DTILNQKGQDVICIYVAVGQKESTVRTQVETLKRFGAMDYTIVVEAGPSEPAPMLYIAPY AGTAMGEEFMYNGRDVLIVFDDLSKQAVAYRELSLLLRRPPGREAYPGDVFYLHSRLLER SAKLNDKLGGGSLTALPIIQTEAGDISAYIPTNVISITDGQIFLQSDLFFAGTRPAIDAG NSVSRVGGNAQIKAMKKVAGTLRTDLAAYRELESFAQFGSDLDQATQAKLNRGQRTVEVL KQPLHDPIPVEKQVVILYALTHGYLDAVPVEDIARFQNELFDNFDSSHADLLKTIRETGQ LPDDKKLSAAIEEFSESFTPSEK >gi|256541467|gb|ACPV01000007.1| GENE 12 9766 - 10728 1078 320 aa, chain + ## HITS:1 COG:SP1509 KEGG:ns NR:ns ## COG: SP1509 COG0224 # Protein_GI_number: 15901356 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 320 1 292 292 256 43.0 4e-68 MPASLLELKKKIASVKQTGKITEAMRMVSASKLNQTENRDKGYTVYNDHIRRTISRLISS EVVDNIREKDVSIDKNNVAQIDYTDVFGLGITADMIQPRKNIKTTGFLVISGDRGLVGSY NSNVIKNMMSIFEDERAQGHDIKVLAVGSVAAQFFKKNNINVVYEKNGVSDVPTFDEALP IVSTAIKMFLNGVYDQLYVCYTHHVNSLSSAFRVEKMLPIVDLDIGVKEAEAHKELEYDI EPDPNQVLMKLLPQYARSTIYGAILDAKTAEHASSMTAMQSATDNANDLVSNLTTKLNRA RQAQITTEITEIISGANALE >gi|256541467|gb|ACPV01000007.1| GENE 13 10751 - 12190 1698 479 aa, chain + ## HITS:1 COG:SP1508 KEGG:ns NR:ns ## COG: SP1508 COG0055 # Protein_GI_number: 15901355 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 465 1 467 468 715 79.0 0 MSEGEIVQVIGPVVDVKFPIDKNLPDINNALRVIKSEDESIVLEVTLELGDGVLRTIAME STDGLRRGMKVEDTGGPISVPVGEDTLGRVFNVLGQPIDGGPEFSKDHPREGIHKEAPKY ADLTTSREILETGIKVIDLLEPYVRGGKVGLFGGAGVGKTTIIQELIHNIAQEHGGISVF TGVGERTREGNDLYFEMKASGVLSKTAMVFGQMNEPPGARMRVALTGLTLAEYFRDVEGQ DVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSIQA VYVPADDYTDPAPSTTFAHLDATTNLERSLVEQGIYPAVDPLESSSSALDPEVVGEEHYE VATRVQHVLQRYHELQDIISVLGMDELSDEEKLIVARARKVQFFLSQNFFVAEQFTGVPG SYVPIKESIKGFKLILDGHLDDLPEDAFRGVGPIEDVLKKAQEMGVTPSDPEAKALLEK >gi|256541467|gb|ACPV01000007.1| GENE 14 12202 - 12642 592 146 aa, chain + ## HITS:1 COG:SPy0761 KEGG:ns NR:ns ## COG: SPy0761 COG0355 # Protein_GI_number: 15674809 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Streptococcus pyogenes M1 GAS # 10 140 6 135 138 116 53.0 1e-26 MADPEKLFKVDVVTPNGMIYSHRGSIVDVRAVDGERSIMYNHVPLLTPLVISEVKIKRSR EMDSVVDHIAISGGYIEFSNNVATIIADSAERARNIDVSRAEAAKQRAEQRLKEAREKHD EQTMARAEVALRRAMNRISVYNTKGH >gi|256541467|gb|ACPV01000007.1| GENE 15 12709 - 12939 268 76 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00773 NR:ns ## KEGG: LCRIS_00773 # Name: not_defined # Def: membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 76 1 76 76 92 98.0 3e-18 MFQLGVHVIISIIIYLIAIGLSFQAVKAIQLDKIIRKGHVFETQLLYLFIAIGLGFLVGN FVITFIDTSMQLSNLF >gi|256541467|gb|ACPV01000007.1| GENE 16 13023 - 14012 1119 329 aa, chain + ## HITS:1 COG:BH3739 KEGG:ns NR:ns ## COG: BH3739 COG1077 # Protein_GI_number: 15616301 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Bacillus halodurans # 2 325 3 326 334 403 64.0 1e-112 MARDIGIDLGTANVLINVSGKGIVLNEPSVVAVNTDTNKVVAVGSEAYEMVGRTPGNIRV IRPLKNGVIADFDITEAMLSYFIEKLNVKGFMSKPNILICAPTGVTSIEQKAIIQAAEKS GGGKVYLDFEPKVAAVGAGLDIFKPQGNMVIDIGGGTTDVAVLSMGEIVTSQSLRYAGDR MNQAVISYIKSKHNLLIGSRTAEQIKIEIGSAFEPDQDEQITVRGRDVVDGLPKQTTVTA PEIQKALEPGLMSIIAAAKEVLETTPPELSADIIDRGIMLTGGGALLKNIDKLISYYLQV PVLIADHPLEAVALGTGTLLKNIEKHQRH >gi|256541467|gb|ACPV01000007.1| GENE 17 14125 - 14319 168 64 aa, chain + ## HITS:1 COG:SPy0370 KEGG:ns NR:ns ## COG: SPy0370 COG0759 # Protein_GI_number: 15674519 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 1 49 34 81 86 59 53.0 1e-09 MIDALKKHGPILGLIMGICRILRCNPFIKGGVDPVPDNFTIFRNPHPERYEDPIIASKFH PDSK >gi|256541467|gb|ACPV01000007.1| GENE 18 14328 - 14555 354 75 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00776 NR:ns ## KEGG: LCRIS_00776 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 75 1 75 75 125 97.0 6e-28 MSKKLENIDIEVNELKGKNLPTWEVVIPNRKSIGLIEKVEGRYRATTSKTSNILFANSLE SSINDLLSYFTLHEK >gi|256541467|gb|ACPV01000007.1| GENE 19 14577 - 15770 1039 397 aa, chain + ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 3 385 4 387 414 298 44.0 1e-80 MAKVENETSLFDRLAWNIIIPVLLLALISLYCIYVAALGDPSHIGSPVRAVVMQALWYLI SIAIIMVVMQFDAEQLFKIAPIFFGIGIFLLIAVLFLYNRSVAADTGAKSWFKLGPITFQ PSEIMKPAFILMLARVVKEHNDKYGHTIKTDWLLLGKIIAWLAPVAILLKLQNDFGTMLV FIAIVGGVVLVSGISWKIIVPLYGILILAAIGVIVLVTTSAGQSLLSHFFQAYQFERIKS WLDPSGDTSSGAYQLWQSMKAIGSGQLFGNGFGKASVYVPVRGSDMVFSVIGENFGFVGC VALILIYLYLIIQMVKISFDTRNVFYSYIATGVIMMILFHVFENIGMNIDLLPLTGIPLP FVSQGGSALMGNMIGIGLILSMKFHNRDYMFSTAGDF >gi|256541467|gb|ACPV01000007.1| GENE 20 15850 - 16314 726 154 aa, chain - ## HITS:1 COG:SP1996 KEGG:ns NR:ns ## COG: SP1996 COG0589 # Protein_GI_number: 15901819 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Streptococcus pneumoniae TIGR4 # 1 147 1 147 150 154 55.0 6e-38 MLSQYKNIQVAVDGSKEADLAFSKAVAIAKRNHATLEILHVIDTRSFQNVSSFDSAMVEQ VSKDAEKRMKDYQARATKAGAEDVHYSIEFGSPKTIIGHDFPKKHNIDLIVVGATGLNAV ERLLIGSVTEYVTRTSKCDVLVCRTEEVKDALQG >gi|256541467|gb|ACPV01000007.1| GENE 21 16375 - 16656 282 93 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00779 NR:ns ## KEGG: LCRIS_00779 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 93 1 93 93 137 100.0 1e-31 MAIKIVMIIFILLLLLTSWYMWHRRNGHFLIYDIGGDPRLSNILKWTSVALLAESILGII LLFMGNKYLNLITLFLASLTILAFGLSITQNKE >gi|256541467|gb|ACPV01000007.1| GENE 22 16967 - 18274 1226 435 aa, chain - ## HITS:1 COG:lin1549 KEGG:ns NR:ns ## COG: lin1549 COG2256 # Protein_GI_number: 16800617 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Listeria innocua # 1 428 3 424 427 511 63.0 1e-144 MKPLAYRMRPTNLDEVVGQRHLIGPGKIIRRMVEARLLSSMILYGPPGIGKTSIASAIAG STKYAFRKLNAATDGKKQLQQVAEEGKMSGTVVLLLDEIHRLDKTKQDFLLPLLESGQII LIGATTENPYISISPAIRSRCQIFELKPLSTDDASHAIDRALNDKEKGLGKYNVELTDDA RALLIEKGNGDLRSTLNSLELAVLSTKQELQDKHQDDQKIIITQKEMADSIQMKVQNFDA SGDGHYDLVSAFQKSIRGSDTDAALHYLARLIESGDLVSICRRLAVIAYEDIGLADPDAA EHAIVAIQAAQMVGLPEARIPLANAVIELALSAKSNSAISAIDAALADIRTKKVDSIPAN LKDAHYSGAKKLGHGVNYLYPHDYQNDWVAQQYLPNNLLHASYFAPKGNSKIEARYKATY QKLKQMQSDNLRNNH >gi|256541467|gb|ACPV01000007.1| GENE 23 18275 - 18742 514 155 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00781 NR:ns ## KEGG: LCRIS_00781 # Name: yueI # Def: YueI protein # Organism: L.crispatus # Pathway: not_defined # 1 155 1 155 155 309 99.0 2e-83 MTEDLNKRVEQAAQGITPQTKPDERRRFLGSLRERCLIRMDNTEVKNPELTALFLKHITD FKGYTILINGNITDDGFLGDIEASCSKYDIPFTLVNNETAKTGPHDTAVLVVAKNAINRP RIELKQVYPPEFPKEELAAPKTKESFWHKLFHGDK >gi|256541467|gb|ACPV01000007.1| GENE 24 18834 - 19541 1157 235 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227903670|ref|ZP_04021475.1| 30S ribosomal protein S4 [Lactobacillus acidophilus ATCC 4796] # 1 235 1 235 235 450 92 1e-125 MGENVNPRCTNVELMLNILLQKLLFKFYGGFFMSRYTGPSWKRSRRLGISLSGTGKEISR RNYAPGQHGPNNRGRLSEYGQQLHEKQKLRWMYGLNERQFRTLFTRAGKIREGQHGVNFM ILLERRLDSLVYRLGLATTREQARQLVNHGHITVDGKRVDIPSYEVKVGQTIGLKEKSKN LQQVKDALEAVTARPSFVSFDENKMEGTLVRLPERDEMEPEIDEALVVEWYNKLL >gi|256541467|gb|ACPV01000007.1| GENE 25 19730 - 21442 1761 570 aa, chain + ## HITS:1 COG:lin1636 KEGG:ns NR:ns ## COG: lin1636 COG4477 # Protein_GI_number: 16800704 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Listeria innocua # 8 566 4 564 571 197 23.0 4e-50 MSSIQAIIIIAVVILIIVVVAAMLMINRKQLKEIEAIDAAVTEIEKMHLEDDITRLDKMD LAGESLTTLNTWRKSYTEAAKKKLPRVHKLVEEAANENATYRLFKARKNIKQAQEIIKPT LEDARNTKAVFTELLESNKENQIQYDALIKVYRELRKDILANSFEYGAAIDQVEDQLASM ESDFEEAKNLSSQGDHVEAKRVLSKIRMSLGNLQKRLKPLKEGYHQLEVVFQDQLKELSD AYKKMISEKYYLTSVDVLGRIKEIHDEIDGARKLLAETKVDELAKENKKISGEIDDLYDV LAKEYKARPFVEKNQSKMLTLISHQQTASKKLVEKLRHIDESYELTHGELEKSKDLEKEV NEMYHQYTIDTQNIADGKGVYSAIQDSWLQMLDRLREIDAEQAKMSTDVDGLYDSENVAN DSIKRFKQEVSLVYRRLERRNLPGNPDSFVQMYTLVVNEIGHVSNELSQVRINMEKISAE LIQISDDVERLKREADDIINSANLVELTMQYSNKYADKDSIAQAQKTAMQLYNEYNYKEA LDTIATAIEKVEPGSYQRLENAYYSEEKSN >gi|256541467|gb|ACPV01000007.1| GENE 26 21524 - 22690 1030 388 aa, chain + ## HITS:1 COG:L122222 KEGG:ns NR:ns ## COG: L122222 COG1104 # Protein_GI_number: 15672519 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Lactococcus lactis # 3 383 1 380 381 390 53.0 1e-108 MIVIYFDNSATTKIDPQVLDTYNKVATNIWGNPSSLHKMGDRAHQLLEASRKQIADLLGT KQHEIFFTSGGTESNNAAIKGTAIQKREFGKHIITSSVEHASVANSFNALENLGWRVTRL PVDKEGRVNVNDLRNAIDSDTTLVSIMGVNNEIGTIQPIDEISDLLENYPTIQFHVDNVQ ALGKNIWDKVFTPRVDLSSLSAHKFHAPRGIGILYKKEGKMLTPLHDGGGQEKGLRSGTE NLPAIAGMAMAIRLLLEDEPEKAKREAEIKAKIVDYLKDKPGINIFSPVSDGFAPHILCF ALEGIRGETLVHTLEDQDIYTSTTSACASKTADEASTLVSMRIDDKIATSAIRLSFDETN TLQEADEFIKVFDKIYNHFAKINHLGEN >gi|256541467|gb|ACPV01000007.1| GENE 27 22690 - 23907 1383 405 aa, chain + ## HITS:1 COG:SP0881 KEGG:ns NR:ns ## COG: SP0881 COG0301 # Protein_GI_number: 15900764 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 389 1 389 404 473 58.0 1e-133 MEYTEVMVRYGELSTKGKNRKDFINRLASNVEKVLKDFPQIEFHPRHDRMHIVLNGASFK DVDQRLKKVFGIQTYSPAIKIPKTLEDIEKTSLELMQETFKPGMTFKVNTKRSDHKFEYD TNQLNNLVGDYLFDHMDGLKAEMKHPDLVLRIEVRQDAVYISNQLLHGVGGMPVGTAGKA VMMLSGGIDSPVASWLALKRGVDIEMVHFFSPPYTTEKALAKAKELTGILANYAGKINFI AVPFAEIQETIKEKLPEGYLMTVQRRFMLQLADRIRAQRGGLAIFNGESVGQVASQTLQS MVAINDVTTTPVIRPVATMDKTEIIAKAEEIGTFDLSIQPFEDCCTIFAPPRPKTKPKLE KAREYEARLDVEGLIERAMAGIEITPIYPNEKFLDDKAQEDADLL >gi|256541467|gb|ACPV01000007.1| GENE 28 24134 - 25390 744 418 aa, chain + ## HITS:1 COG:MA2121 KEGG:ns NR:ns ## COG: MA2121 COG2865 # Protein_GI_number: 20090964 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Methanosarcina acetivorans str.C2A # 3 356 15 375 458 132 29.0 2e-30 MRETKNLEFKEKLTNTFLKTVSAFANYGSGKIKFGIKDDGSIVGVKNPVEFCLNVENKIN DSIKPNPDYNLEIDPKTNVVTLTVKQGVNPPYLYKSKAYKSNDSASIEVDRSELSQLILI GENRTYDSLTAMNQNLSFNILEEALKEKIGIKSLTSDILITLNLERKDTSYTNAGELLAD KNNYRGIDIVRFGESINIMLDRASYEHESILKEYKQAIQKYRQYYQHEEIQGATRNIVSQ IPEEAFREAIANALVHRVWNINSQIKISMYDDRIEVVSPGGLPQGLSKEEYLSGQISILR NPIIANVFFRLGLIEQFGTGVRRINDSYRSSLVQPQFEIFDNSIKIILPVLKFITDDLSN DEKKVYQIIHEGADTTKQISQMSKFGRTKVLKILRQLEKQGYIRRMGEGRATKYILSK >gi|256541467|gb|ACPV01000007.1| GENE 29 25524 - 26228 599 234 aa, chain + ## HITS:1 COG:BH3273 KEGG:ns NR:ns ## COG: BH3273 COG1187 # Protein_GI_number: 15615835 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Bacillus halodurans # 1 232 1 230 238 216 51.0 4e-56 MRIDKYLANMNVGSRKEVHQLIKKGIVAVNDVIVKTPKQQVKESDQVTVNGDAVAYQKYH YFLLNKPKGVLSATEDRNQPTVISLLAPQDRYQGIVPVGRLDKDTTGLLLLTNDGQLNHE LLAPGKHVDKVYRAEIAGVANDATVKTFASGMTLGDGTKLQPAELKILSQDEEHDRSTTE IKICEGKYHQIKRMFGAVGMKVVELERISMGKLSLPANLKRGEYLELKLEDIVG >gi|256541467|gb|ACPV01000007.1| GENE 30 26329 - 26634 202 101 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00802 NR:ns ## KEGG: LCRIS_00802 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 89 1 89 293 174 96.0 6e-43 MENTHKKKKPWFGFTEDVIFGEIMSNKNFCKHVLQGLVPEIEIRDIHYLQKQRKVADPKH PKQKAVILDILVEDVDGNLYDFEMQHISKFKVLLCYLSLHV >gi|256541467|gb|ACPV01000007.1| GENE 31 26555 - 26725 83 56 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00802 NR:ns ## KEGG: LCRIS_00802 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 8 52 111 155 293 92 91.0 4e-18 MEICMILKCSTYRNLKCCYVIFLCMFDPQGRHKIKSSYHLYEDTNKTDRLNDKNYN >gi|256541467|gb|ACPV01000007.1| GENE 32 26865 - 27284 407 139 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00803 NR:ns ## KEGG: LCRIS_00803 # Name: not_defined # Def: dolichyl-phosphate beta-D-mannosyltransferase # Organism: L.crispatus # Pathway: not_defined # 1 139 1 139 139 202 94.0 2e-51 MEKIKTAIYSEDFVQLVKYVLIGVLGLVVDFGIYTILTHFKMNVEIANIISSTCGIINNF LWNSYTNFKVHDRMILRFISYFIVGQITTVFTTVSLFIFVTKLGYPHLIVKIVATFVATL IQFVINKVVTFRKAKKEEI >gi|256541467|gb|ACPV01000007.1| GENE 33 27284 - 28213 834 309 aa, chain + ## HITS:1 COG:SP1606 KEGG:ns NR:ns ## COG: SP1606 COG0463 # Protein_GI_number: 15901446 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 4 308 2 305 320 336 54.0 4e-92 MEKLSIVVPCFNEQETIPLFYPAVQKVLAKMPKVTPEYWFVDDGSNDNTLTELKKLHEQD KHVHYISFSRNFGKESAIYAGLSAATGDYIVLMDVDLQDPPSLLPKMYKILQTGDYDAVG CRRVDRKGEGKFKSFLSNQFYKVINRISKVEIVSGVRDYRMMTRQMVNAVLSMKEYSRFS KGIFAWVGFKTKYLEYHNVERVAGETDWTTHKLFKYALGGIADFSQAPLNLAVWIGTTSF ILSIIGLIFVIVRKLIVPGSSILGWASTISIILLIGGLQLLCIGIIGRYIGKIYLQVKER PIYIVKEEK >gi|256541467|gb|ACPV01000007.1| GENE 34 28361 - 28873 347 170 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00805 NR:ns ## KEGG: LCRIS_00805 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 170 1 170 170 339 100.0 2e-92 MKNTHTSRFMKSNTKVILYHGSNQAVYQPRINKNVFTTDFGNGFYVTANRRQAEKWAKRK ARYSGQPTLNRYVFDADQPDLKILVYQADIDWIKFVIQNRMNNIKDNSDIVIGPTADGKL FSVVNCWKHGNLDLDEALLKLKPSVYSEQYCFKTERALKALTFIDKELVR >gi|256541467|gb|ACPV01000007.1| GENE 35 28870 - 29145 334 91 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00806 NR:ns ## KEGG: LCRIS_00806 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 91 1 91 91 164 100.0 8e-40 MIPEISEKQFHQQLAEAISDLIAKRLNIYPKQALNLFEKSRVYKDLMNSDDEFDQMMPAD FFDLWQNERLVGVPVSSADIANGLLKDKKYK >gi|256541467|gb|ACPV01000007.1| GENE 36 29179 - 29385 294 68 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00807 NR:ns ## KEGG: LCRIS_00807 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 68 1 68 68 85 97.0 6e-16 MDYEEKILEREQDAREEGKEEGLKRGVKILVSSLKRTGNTKQEIMHLLEQNYGSDFTDEQ LENFLKES >gi|256541467|gb|ACPV01000007.1| GENE 37 29591 - 32206 2998 871 aa, chain + ## HITS:1 COG:FN1022 KEGG:ns NR:ns ## COG: FN1022 COG0474 # Protein_GI_number: 19704357 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Fusobacterium nucleatum # 1 870 1 860 862 828 53.0 0 MEYYRQKKDEIAKELNTDLKQGLSAKEAQEKLAQVGPNALVEGKKKITFQVFLEQFKDLM VIILIIAAIISAFTGSLESTLVIIVVLILNAILGTVQHVKAEKSLESLKSLSAPTAKVLR NGQKMEIEAKDLVPGDILLLEAGDLVTADGRILENYSLQVNESSLTGESTNVDKLDTDFE KEVPLADRVNMVYSSSLVTYGRATVVVTATGMQTEIGKIASLMNETKERRTPLQVSLDQF SSRLATAILILCAVIFGIQMWRGQPLLDSLLFAVALAVAAIPEALSSIVTIVQAMGTQKM AKENAIIKNLAAVESLGSVSVICSDKTGTLTQNKMTVEDIYIGGKVLKPNELDLSNQLHR YLLYDVVLNNDASLAEDKAIGDPTESALLEMYRQVPGIDLGNGVLGLSEQELREHSKRLE EVPFDSDRKLMSTKHLIHTVPTIFVKGAIDVLLKRCVNIRFGDEIRPMTEEDRKEILAQN NYFSENGLRVLAFAYKESDEELSTEAEDGLTFIGLVSEMDPPREESVAAVARAKEAGIRT VMITGDHKVTAVAIAKKIGIFNEGDMALTGLELDALSDEELDQNIEKISVYARVSPENKI RIVNAWQRKDRIVSMTGDGVNDAPALKKADVGVAMGITGTEVSKDAASMILADDNFATII KAVANGRTVYENIKNAIGYLLSGNLSAIITVLFASLAGLPVPFVAVQLLFINLVTDSLQA LAIGMEPGDPDILKRKPRDPKAGILDKAFVSQITIQGLLISISVIAAFLIGLKDSPAVAT TMAFSTLTFARLLHGFNCRSQHSIFKIGFKNNWYSLAAFAVGTILLALILFVPALHSLFA VTPLTGQEVMWLAGLALIPTILIQAVKMIRK >gi|256541467|gb|ACPV01000007.1| GENE 38 32339 - 33547 946 402 aa, chain + ## HITS:1 COG:no KEGG:LAF_0101 NR:ns ## KEGG: LAF_0101 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 1 398 2 400 402 441 59.0 1e-122 MNKNKLYFLKLEIQNHPLFEDDLEFSLVSDARVTSNTSDRLTHLLGSLWVNNLITLVGTN ATGKTTIMKLLIGILQTVVMEKSIDQTKLTDVLIGNEPISVTTYFYGTDHVVYKDSLVFK LKKTLSKSWHIESETVYRKKVTVNLSKKKLFDFKNIKPELDRKELGDLASSILSSDDSIF RAIISKNKYYPQIPFDTLFFTDFNALMYGSGNVPGEILNFLDPTIEYLKIENKPEGSGAT KQLFKLKFKGKDTEIAENDFTTIAKYLSSGTAKGITLYGEVINALSVGGIIFIDELENHF NHAIVDSFIEYFTNPKININRATLVFSTHYTEILDKIERTDEEYITKREGKIQLQRYSTA DVRSDLNKADVFESDYLGGTAPDYDAYMALKKATEKAVKMDE >gi|256541467|gb|ACPV01000007.1| GENE 39 33540 - 34076 402 178 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877307|ref|ZP_03995380.1| ## NR: gi|227877307|ref|ZP_03995380.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 178 1 178 178 302 100.0 7e-81 MSNSTDLIAIIVEGHTERAIMEVLLEHDALKFNEDDLLEGEVIRARNAKKFAKEFLNKGF RSRKVKIYRILDSKTEKFNLPEVYKKKVSEVVELRTRPEIEILDILYHQDYQRYTNNYKS KVKPSDFVKQYYNDLKSVKSYDENYYFWNSHYDDLINVLKQYKQYHSSEKCIADLLKE >gi|256541467|gb|ACPV01000007.1| GENE 40 34392 - 37031 3088 879 aa, chain + ## HITS:1 COG:SA1488 KEGG:ns NR:ns ## COG: SA1488 COG0525 # Protein_GI_number: 15927242 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 3 876 2 875 876 1164 61.0 0 MTDLAPKYNPNEVEKGRYQTWLDEDLFKPSGNKKAHPYSIVIPPPNVTGKLHLGHAWDTA IQDTLIRFKRMQGYDTLYLPGMDHAGIATQAKVEAKLRKQGKDRHQMGREAFVKQVWDWK DEYASIIKGQWAKMGLSLDYSRERFTLDKGLSKAVKKVFVQLYNEGLIYRGEYIINWDPA LQTALSDIEVIHKDDKGAFYHIKYPFADGSGYVEIATTRPETMFGDTAVAVAPGDKRYKD IVGKELILPLVGRHIPIIEDQHVDPEFGTGLVKITPAHDPNDFQVGNRHNLERINVMNDD GTMNEEAGKYAGMDRFECREALVKDLKEEGYLIKIEPIVHSVGHSERSGVQVEPRLSKQW FVKMKPLADKVLENQKTDGKVNFVPERFEQTLDHWMEDVHDWCISRQLWWGHRIPAWYNK KTGETYVGEETPKDIENWEQDPDVLDTWFSSALWPFSTLGWPDTNAEDFKRYFPTNALVT GYDIIFFWVSRMMFQSLHFTGKRPFNDVVLHGLMRDEQGRKMSKSLGNGVDPMDVVDKYG ADALRWFLLNGTAPGQDTRYDPKKLSAAWNFINKIWNASRFVIMNLPADAKPAHMPDASK FDLSDRWIFDRLNHTVSEVTRLFDEYQFGEAGREAYNFIWNDFCDWYIEISKVALNGDDE ELKARKQENLIWILDQILRLLHPIMPFVTEKLWLSMPHEGKSVMVAEYPTTHKEFENKQA DQDMAFLIETIKAVRNIRMEVNAPMSSQIDIMIQLDDEANKRVLDENADYVENFLHPKEL TVASEVEAPKLAKTAVIPGAQIFVPLTELVNVDDELEKMEKEEKRLEDEVARCEKKLANK GFVGHAPEAVVNKEKEKKADYESQLAGVRERIQDLKESK >gi|256541467|gb|ACPV01000007.1| GENE 41 37032 - 38315 985 427 aa, chain + ## HITS:1 COG:L0177 KEGG:ns NR:ns ## COG: L0177 COG0285 # Protein_GI_number: 15673139 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Lactococcus lactis # 7 413 4 419 427 216 32.0 9e-56 MKFTKAQEVIDYLYALPHLHPKNNLSFIKRLLLELGNPQDLVKTIHITGTNGKGSTSYYL SNLLKKAGQKTGLFVSPYVYEFNERIQLNNQNISDQDLVKTANIVQGTYEKLQQQDSTFS LVTFEYEVALAFVYFAQKKCDYAVIEVGIGGEHDKTNVIMPEVSVITTIGLDHEKIIGPT IQDIAREKSGIIKAKRPVVLGNVPEVVWPILKSKAEEEHAIVYQLGRDFSVLLDNQIVYQ DHKRKLVFALRPQVEAYDIAVACQAFFLLKLPLSNEEVETAINQTIIPGRYQILRENPLI ILDGAHNIQAMSNLLAVVHRMTQQKHGKLYALVTMMKDKDLEQVFSLFDDKDEVLLTTLS YPRVAKKDDFPIDVQKRYNYEKDYRAAFTQLRDHLGANDILIVSGSFYLVSAILNWKGKR DARTRAR >gi|256541467|gb|ACPV01000007.1| GENE 42 38293 - 38970 680 225 aa, chain + ## HITS:1 COG:CC2096 KEGG:ns NR:ns ## COG: CC2096 COG0637 # Protein_GI_number: 16126335 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Caulobacter vibrioides # 10 204 7 196 221 104 32.0 1e-22 MRVQGLDDDIQGIIFDMDGLLVNSEKLYWDANIQAAEEENLGTPRDAYLKLTGATVKEMQ DFYHKYFKTEADRDRFIKRTDDLVWQWTDEGKLKLQPGVQEALDEFEKRGLKMAIASSNY ENVVQHAMWVTGIRNYFDFHLSYLDVQRGHIKAKPAPDIYLEAAKKMNLPKENILVFEDS STGVQAAANAGLKCVMVPDLKAPSVKDKQNATMICQNFFEFLKKI >gi|256541467|gb|ACPV01000007.1| GENE 43 39006 - 39638 416 210 aa, chain + ## HITS:1 COG:MA1979 KEGG:ns NR:ns ## COG: MA1979 COG2003 # Protein_GI_number: 20090827 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Methanosarcina acetivorans str.C2A # 80 204 103 225 229 105 39.0 6e-23 MLKRKPNHYFVKTDLELLTQLFEQLENKGIHTLQDLNVFLKNTGLNSFNDLLKFITSSEC SDELAITAEAVLDRLRCASPKRKTILTSSIEVGTYLADKLIGHKQEELWALYIDNSNHII AEKKLFQGTLNRSIAHPREIFRWAVIYGCSGIFIAHNHPSGKLTPSASDLELTESLRQAA KMMKIDFLDHFIVGEGQYLSLREKNCFKVL >gi|256541467|gb|ACPV01000007.1| GENE 44 39724 - 40728 1320 334 aa, chain + ## HITS:1 COG:lin1583 KEGG:ns NR:ns ## COG: lin1583 COG1077 # Protein_GI_number: 16800651 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Listeria innocua # 1 333 1 335 337 407 67.0 1e-113 MFGLGTKNIGIDLGTANTLVYMEGKGIVLREPSVVAKNTQTGEVIAVGSEAKEMIGRTPG SIVAIRPMKDGVIADYDTTAAMLKYFMEKTVGNSKPSVMVCVPSGVTEVEKRAVIDAARV AGAREAFVIEEPFAAAIGAGLPVMDPTGSMVVDIGGGTTDVATISLGGIVSSTSIRQAGD KFNNAIVNYVHSNFNLLIGERTAEDIKIQIGSASVEKAKEIESMNIRGRDLVTGLPKSVD IEAVDVAKAIQDVVQDIIVAIKETLEQTSPEIAADVIDHGIVLTGGGALLKNLPEVISEA TKVPVFIAQDPLDCVAIGTGESLKNIEVMRRSRK >gi|256541467|gb|ACPV01000007.1| GENE 45 40774 - 41625 695 283 aa, chain + ## HITS:1 COG:lin1582 KEGG:ns NR:ns ## COG: lin1582 COG1792 # Protein_GI_number: 16800650 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Listeria innocua # 1 279 1 275 295 161 40.0 1e-39 MKKFLQNKKLLSAFIIVVVILSVLGGSVSLRNRRNTPLLIQSLGNDVVALGTRIVDVPVG LVSGGLNSVHDILNTQEENNHLKREVTNLGQTKARNSALEKENRQLKSALKLKDTLSGYT MVNASVISRSPDTWSDLLVINKGSSAGIKKNMAVMCDGGVIGRIVEANAASSKVELLTTT DESANRFSVQADAANGKTVHGIITVTSNNYLAFTQVVDGRKLKAGTRVYTSGMGGNSPKG LLIGTVTTTTRDSFGLSDQIRIKPAGDISDPSVVTVIERQVAN >gi|256541467|gb|ACPV01000007.1| GENE 46 41625 - 42164 475 179 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00819 NR:ns ## KEGG: LCRIS_00819 # Name: mreD # Def: rod shape-determining protein MreD # Organism: L.crispatus # Pathway: not_defined # 1 179 1 179 179 288 99.0 7e-77 MSTFRKWVLAIGLFIALVVDGVCALYLHQFMTYDNFAASSVILPISVMLIGLFDDTNDNE IWLALGAGIVADIYFYGIIGVYTVFLPASCWICQKTARFLPEMLWARLIVVLLGTAVFVA YSWLIFNMVGISAASAHVLLMSILVSLGWAVVFFFLLYWIWGNLAQDYPFLIDLNAYRV >gi|256541467|gb|ACPV01000007.1| GENE 47 42206 - 42331 60 41 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MARKKKKKSGFQKLTIAMAWIMAIITLAAVIAQAAISLQSF >gi|256541467|gb|ACPV01000007.1| GENE 48 42425 - 42754 262 109 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00820 NR:ns ## KEGG: LCRIS_00820 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 109 1 109 109 174 100.0 8e-43 MLYIFLIPIIGLVVAFFINKIFPKAQFRGYDVMPFFFLSACGLITLHMNKPSFLPYGFLC YFVLVIVVSLNDAIRNKNISLGKTVRKLWDYLTACTVFWYIGLLLMLVL >gi|256541467|gb|ACPV01000007.1| GENE 49 42925 - 43356 370 143 aa, chain + ## HITS:1 COG:BS_yllB KEGG:ns NR:ns ## COG: BS_yllB COG2001 # Protein_GI_number: 16078577 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 138 1 138 143 177 56.0 8e-45 MFMGEYHHNLDSKGRLIIPAKLRDQIGDKMIFTRGMEGCIFGYSMEEWSKIEAKLAKLPL TKRNTRKFMRLFYSGAMECEFDKQGRVNLTTTLKMHAKLIKECVIIGVSDRIEIWSKERW TSFEEEANEDYDDIAENLDDIEL >gi|256541467|gb|ACPV01000007.1| GENE 50 43362 - 44309 630 315 aa, chain + ## HITS:1 COG:SA1022 KEGG:ns NR:ns ## COG: SA1022 COG0275 # Protein_GI_number: 15926762 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Staphylococcus aureus N315 # 3 315 2 310 311 323 53.0 3e-88 MKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIDTGTLVGFDQDEYAIKS AKLNFANLLQLDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRG FSYRYDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREK PIATTFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPG GRISVITFQSHEDKIVKRIFKKYSEVEVPRGMPFIPDGMKPTLRLVNHKPIVASTSELEN NNRSHSAKLRVAEKL >gi|256541467|gb|ACPV01000007.1| GENE 51 44323 - 44685 391 120 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00823 NR:ns ## KEGG: LCRIS_00823 # Name: ftsL # Def: cell division protein FtsL # Organism: L.crispatus # Pathway: not_defined # 1 120 1 120 120 184 100.0 1e-45 MADSSARKIEYEPSSRNGSQRRQRIILDPRKVPYSGIEKALMIIGSVITLGMMIFLVSSS ISATSAQHELTRTQQTVAKEQNKITDLRQEIGELTSTSRLNKIAREKGLTLINKNIRTIR >gi|256541467|gb|ACPV01000007.1| GENE 52 44685 - 46844 2121 719 aa, chain + ## HITS:1 COG:lin2145 KEGG:ns NR:ns ## COG: lin2145 COG0768 # Protein_GI_number: 16801211 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 31 717 21 713 752 458 39.0 1e-128 MKKNSNLKLQKSKAHGYRFTVGRFLQMAVALVFLVFTARFLYIGISKTVNGQNLSQRTKQ LYKRNQVIKATRGTIYDRNGLTIAEDSHLYTVYAILDKTSINYKNKPEYVVNKTKTAEKL AQVLPLSAEKIYQYLTPKKKVFQVQFGTGGSGLTLRQKKKIEAMKLPGIKFLETPSRLYP NGVFASHTVGLAQPIWNKKTNAQNLVGTMGIEAYFNKTLTGTDGYRISSVDASEYQLPNS NQVYKPAKNGNNLYLTLDSQLQSLLETRLSEVQKTYRPTSITATVEDMKTGKILATSQRP TFNPQTMKGLTKSYRDILVQDTYEPGSVFKILSFAAVVNSGNYNPNEYYRSGSVNIAGST IHDWLTSGWGTIPFSQAFERSSNTGFVKLEQKMGAKTWKKYLRKFRIGEKTGVSLPGEQP GMISFKTPVDQAITAFGQGVTVNVMQMMQAYSSLANNGQMVKPQLVNKITDSDGNTIQGY QIKKVGTPVYSAKTRKVIVANMRKVLNKQSGTGSAYKMGNADIAVKTGTAQIANPKGGGY LKGDSNYIFSVVGIYPASKPRYCIYLTIKQPHLIGGGAEKILASIFKPMMQRIISIAKND DVSTTVKVPNLKAKTVAQAESQTKQLGLNLVKIGSGDRISNQGVKSGEKLESGSKIFVNT SGKIICPDMTGWTYSDLHQFASLTDIKLSIKGTGTVASQSVAKGTELKAGRKLNIKLKE >gi|256541467|gb|ACPV01000007.1| GENE 53 46851 - 47819 1093 322 aa, chain + ## HITS:1 COG:lin2143 KEGG:ns NR:ns ## COG: lin2143 COG0472 # Protein_GI_number: 16801209 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Listeria innocua # 4 320 5 321 324 284 52.0 2e-76 MNMMLASCIALVSSLVLTVIFIPLLIKFMRSHHEGQEIRDEGPKWHQKKSGTPTMGGTVF VIAAVISVIWVAAMQHSLNKVVWILVISLLGYGIIGFLDDGIKLYFKRNLGLRAWQKLAL QIIIAILIVLIATSDHFQFGLYIPFAGVVHSLVLFVAFIIFWLVGFSNAVNLSDGLDGLA TGLSVVAYGTYAYIAFKQKNFAVLAFCMSVIGGLIAFFIFNHKPAKIFMGDAGSLALGGG LATISIMLNRPWSLLLVGIVFVCETASVILQVISFQTTGKRIFKMTPIHHHFEMLGWSEW KVDIVFWLVGLIGSILYLVIWG >gi|256541467|gb|ACPV01000007.1| GENE 54 47827 - 49206 1664 459 aa, chain + ## HITS:1 COG:BH2567 KEGG:ns NR:ns ## COG: BH2567 COG0771 # Protein_GI_number: 15615130 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Bacillus halodurans # 1 457 1 449 450 376 45.0 1e-104 MKDIKTYNNKNILVLGLGKSGFAVSELLLQLGANLTLNDKADLEKNAKAQELKSRGVRVI GGHHPVDLLEKEHCDYLVKNPGIPYENPMVQKAEELNIPIITEPEVALSCSDAPYVCVTG SNGKTTTVMLTQRILDHHLQKSGHHAYAVGNIGVPISEVVPKATKDDILVVEISSFQLLG VTDIDPKVAAIVDIYNNVHLDYHKTFENYVNAKLNVTRTQNSNDYFIANYDQKDILAKEK EVSPAKMQTFSETDHNADYFIGDEYLESQNEKIMKISDIKLPGIHNLQNSLVAIAISKIM GADNDDIAAVLSTFTGAKHRLQYVTTLDGCKVYNDSKSTNIEAATVAIPSFKQPEVLIAG GLDRGFTFDDLVPLFKKHVKSIVLYGETRYLLADAARKAGIKDIVIVNTLQEAVPRAWEL VEPGDVLLFSPACASWDQFRTFEERGDYFVRFVEELKTK >gi|256541467|gb|ACPV01000007.1| GENE 55 49208 - 50314 1147 368 aa, chain + ## HITS:1 COG:BH2565 KEGG:ns NR:ns ## COG: BH2565 COG0707 # Protein_GI_number: 15615128 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus halodurans # 1 368 1 363 363 336 46.0 3e-92 MRVIFTGGGTGGHIYPIMAIIERLKERGISKNDEILFVGTQKGLESKIVPAAGVNFKTIK IQGFNRKHPLKNFETIKLFLQATKSARQILRDFKPDVILGTGGYVSGAMVYEAAKMHIPT MIHESNSVVGLANKFLGHYVDKICYTFDDAAKEFSEKKKLVKTGNPRSQQVLSLHEEKID LEKTWGLNPKMPTVLVFGGSRGALAINRIMLKSLMTLKQKPYQIIWATGTFYFDKVQEKI KNVDIGNNIKVLPYIKNMPGLLPEMTCVVSRSGATSIAEFTALGVPVILIPSPNVTHNHQ MKNALDLEKAGAALVIPEDDLNPNNFVSSIDHILLDEKYATEMSKASKALGVPDASDQVI KVMEEISR >gi|256541467|gb|ACPV01000007.1| GENE 56 50331 - 51188 591 285 aa, chain + ## HITS:1 COG:BS_divIB KEGG:ns NR:ns ## COG: BS_divIB COG1589 # Protein_GI_number: 16078588 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Bacillus subtilis # 30 281 7 257 263 77 24.0 3e-14 MAKKPVTKIDPRKELSPYLNHEFNQQRNSRKSQTKISASLSNLQAERRRSLRRRLGLIMT VSVLAIAGLGYYISPLANISTVKIIGAEHLPAKEIVKVSKIKASDKVFDYLFQQKDLSQR LSQKYPEIQSAQVHLGHINQLILQINERKTVGYLKDGYSYRKILDNGKIGTRALPWTKVN QDKPIFVGYNKSDELKNDLKLFNSLPNSFKNQVKLLSGNTRRNSQIILVMKDGNVVIGNT ATLNSKLKYYDTIRIKAGKHSLIDLEIGAFSRPLTSSEKKAYGIS >gi|256541467|gb|ACPV01000007.1| GENE 57 51251 - 52603 1320 450 aa, chain + ## HITS:1 COG:SP1667 KEGG:ns NR:ns ## COG: SP1667 COG0849 # Protein_GI_number: 15901502 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Streptococcus pneumoniae TIGR4 # 1 383 1 386 457 266 38.0 4e-71 MENSNLLVGLDIGTTSVKAVVADSGKVIGAVTTPNSGMRHGQIVDIDQTASAISRALKGV AEKTNAKIYSVVTGIPVGMLQLETATGFANVGEQGQEVNNDDVKRTIRSAIHSAAKDDRE AITFLPSRFLIDGKTEVDDPRKMIARSLGVSGILLTAPTSPLHNIKKAIERAGYHNNFFV PTPLAISSVALNESEKTFGSVIIDLGGGVSTATVIKDGQIKYANIDLEGGSDITNDISAV LSISKKDAEQIKLDYGFADPQFASKNDKFAINSVGANSQQMVDEVYLSEIINARLEQILT RLGKGLVKHNALKQPGGIVITGGSSLLQGIDSLTANGLNVKARIYEPDQIGMRNPIYTAA YGIVHYSYKMSEVDYLVNGVIYGFGEPAVEDPVSQPKSTKISTSNSESEAKEAYNRSKMS ARTESVPDDENNTKQEKTNSLKSFFKKFFD >gi|256541467|gb|ACPV01000007.1| GENE 58 52618 - 53961 1748 447 aa, chain + ## HITS:1 COG:L0208 KEGG:ns NR:ns ## COG: L0208 COG0206 # Protein_GI_number: 15673851 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Lactococcus lactis # 1 369 1 365 417 361 63.0 1e-99 MDFTFDSDDNKNAVIKVIGVGGAGGNAVNRMIDDGVQGVSFIAANTDVQALNSNKAENKI QLGPKLTRGLGAGSHPEVGQKAAEESEQTIEDALKGADMIFITAGMGGGTGTGAAPVVAK IARETGALTVGVVTRPFSFEGPKRSKNAAEGITQLKQYVDTLVIIANNRLLEMVDKKTPM MDAFKEADNVLKQGVQGISDLITSTDYVNLDFADVKTVMENQGAALMGIGRASGENRTVE ATKLAISSPLLEVSIDGAKQVLLNITGGPDLTLFEAQDASEIVSKAAGDDVNIIFGTSIN PNLGDEVVVTVIATGIDSKAEEAASKQLPGRSQQIKAQPVKEKEEAPKAEEPKQPVDRPQ TVQPAAEKQEPEQPKQTMVDPTSVWGLNDSEDNQRRNTQPTEPKKDYEGFDTFSDEDQDS ISQIETSAQDDSDDNSDIPFFKHRSEN >gi|256541467|gb|ACPV01000007.1| GENE 59 53979 - 54416 451 145 aa, chain + ## HITS:1 COG:BS_ylmF KEGG:ns NR:ns ## COG: BS_ylmF COG1799 # Protein_GI_number: 16078603 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 4 143 3 146 149 95 40.0 3e-20 MAFDKLGRFFGISNDDELENDEEYASQTKNENEDLPLNSVNRDNVVSIKSGLNSAKSKIV LYEPRVYSDAKDVAQNLLNNKAVVINFSRMEDSSARRIVDFITGTVYALNGEIQRIGDKI FLATPPKFVTDGKISDLVDKKDNLS >gi|256541467|gb|ACPV01000007.1| GENE 60 54416 - 54718 234 100 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00832 NR:ns ## KEGG: LCRIS_00832 # Name: yggT # Def: cell division membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 100 1 100 100 138 100.0 6e-32 MVNILNLIYLALTWILWLYSLLIVIDAIMSWLPMLSNSVVGRFLDKVVNPYLNLFRKGPF ARLAYSTGIDVSPIIALFILYFIQNYVLRWIFDILLRMMV >gi|256541467|gb|ACPV01000007.1| GENE 61 54718 - 55518 1371 266 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227877329|ref|ZP_03995402.1| ribosomal protein S4e [Lactobacillus crispatus JV-V01] # 1 266 1 266 266 532 99 1e-150 MERRQASKFYPHFNQEERPVIDYFTGLFNQLIFKHEPILTDFLDPGKRAILRTIVGNDAF VQEYGGYPNAEKKRVYLSEEWLNLRPSDYQIQPYEIEYPQKFTKINHSVILGTLANSGID TSIFGDIINDNQGKWQFFTKKEMTEFFEEQIDRIGRAKVKLRPISFKEVLVPEDDSIEKT KIVASMRIDAVLSGISRQSRGQIQKMINSQLVKLNWHEIADSNIMIKEDDVLSLRHFGRI LIEDVSTTRKGKYKVVLRLWQTKKHN >gi|256541467|gb|ACPV01000007.1| GENE 62 55524 - 56318 818 264 aa, chain + ## HITS:1 COG:lin2128 KEGG:ns NR:ns ## COG: lin2128 COG3599 # Protein_GI_number: 16801194 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Listeria innocua # 1 162 6 152 175 68 32.0 1e-11 MDIHNKEFKRRGRNGYDRLEVDSFLDQIVDDYGDTLDQVVDLKNEVVSLNKKLTDLQEKV DDYQDQVNEYNEKKRSLNKSLISAQQTADEIREKAEAEAKQIIADAKKQAEDNINFQKHQ QDTISTDYMRVKEQVSEFRSNIQEMLQTEIDNLNDEKWQHALDDYFNLERYYPDDGSEPV SADDEDVEDEDVDNDDENDVNSSQGPDDLELDQLDDSDDADNEENAAPKPMTGDSPSHET INVKPEMKSDPLGPTIVFPDDYKK >gi|256541467|gb|ACPV01000007.1| GENE 63 56546 - 59347 3243 933 aa, chain + ## HITS:1 COG:L0350 KEGG:ns NR:ns ## COG: L0350 COG0060 # Protein_GI_number: 15673845 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Lactococcus lactis # 1 933 1 932 932 1197 61.0 0 MRIKDTLNLGKTKFKMRGNLPVREAEWQKEWEDNKLYEQRLKLNEGKPRFDLHDGPPFAN GNIHMGHALNKISKDIIVRYKNMNGYYAPYVPGWDTHGLPVEQQLAKQGVDRKTMDRAKY RELCRQYAEEQVQKQMADFKRLGVMADWDNPYITLQHDFEAQEIRVFGEMYKKGYIYKGL KPVYWSWSSESTLAEAEVEYHDIKSPRIYVAFPIKDGKGILDSDVSLVIWTTTPWTIPSN VGITVNPRFDYSLVEVDGKKYVIGSDRLPAIAEDLGWKDYKVLKQLKGTDFDGMTYKHPL YGKTGVGQYGLVMNDTYVTDDDGTGLVHNATGFGEDDYRVGQKYGIPVFSPMDAQGRFTK DIPDPDLVGMFYDDANKVVADKLKKAGALLKLSFFTHSYPHDWRTKKPVVFRATTQWFAS ISKFRDQILDQIEQANFIPSWGKTRLYNMIKDRGDWVISRQRAWGVPLPIFYAEDGTPIV TPETIDHIAKIFEKEGSNAWYTHTAKELLPEGFTSEHSPNGEFTKEKDILDVWFDSGSSW SGVMEKRDGLHYPADLYLEGSDQYRGWFNSSLITSVAVTGKAPYKEVLSQGFVLDDKGHK MSKSLGNVISPNDVIKKMGAEIIRLWVAQADTTSDVAVSMGILQQSAESYRKIRNTFRYM LANTSDFDPKENRVAYADLRSVDQYMEVKLNDLVKDCLAAYDKFDFTTVFKKVFNFVSND LSAFYLDFAKDVLYIDGENSHDRRSMQTVIYDAAVKLAKILTPILPHTMEEIWGFLKEPE DYVQLANMPEVEEYANHDDLLENWGKFMKLRDDVLKALEDARNKKLIGKSFEATVTIYPD KETKAMLQDLDADFRQILIVSKLTIADGEAPDNAKQLNNASVVVEHAEGEVCPRCRMIRT DIGVDPKLPMLCGRCAKIVEADYPEAVQEGFEN >gi|256541467|gb|ACPV01000007.1| GENE 64 59347 - 59550 311 67 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00836 NR:ns ## KEGG: LCRIS_00836 # Name: cspA # Def: cold shock protein # Organism: L.crispatus # Pathway: not_defined # 1 67 1 67 67 119 100.0 4e-26 MRLGTVKQFDEGSSYGFIEDDRNHKSYFVFYKAIKEEGYKTLQVGQRVKYQLAQGKNGLQ CVNVYLA >gi|256541467|gb|ACPV01000007.1| GENE 65 59566 - 60135 531 189 aa, chain + ## HITS:1 COG:BS_yqkG KEGG:ns NR:ns ## COG: BS_yqkG COG0494 # Protein_GI_number: 16079418 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Bacillus subtilis # 3 172 4 172 185 134 41.0 1e-31 MDLKETEISSQQIFQGRILDLAVRTIKLPNGETATREVIKHKPASAVIAINDEQKMLLVK QWREPIKQITLEIPAGLVDSTDASPLDAMKRELNEEGGYRTDYWEKVSEFYSSPGFCDEK MYLFYCDTLTKLTDKRALDADEFLTSSWYSLDELKTLLAEGKIVDAKTIYAITVWENMML RNAQTDNKD >gi|256541467|gb|ACPV01000007.1| GENE 66 60138 - 60452 205 104 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00838 NR:ns ## KEGG: LCRIS_00838 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 104 1 104 104 115 98.0 4e-25 MVEKRSDYRKRQKKSLLNKLKSSFSDNDSEEVDVNPDFKRDDSEEEPRRRPLAGDGQEFY QHNQSSDKETIRQEKSLRLKKRLNRAILIVIVLIILVLLALFHL >gi|256541467|gb|ACPV01000007.1| GENE 67 60471 - 61166 795 231 aa, chain + ## HITS:1 COG:HI1216 KEGG:ns NR:ns ## COG: HI1216 COG0775 # Protein_GI_number: 16273135 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Haemophilus influenzae # 1 230 1 229 229 140 35.0 1e-33 MKIAIIVPMAEEAEFYRDHFHAETKEMFGSTEFEHFSVNGNDVYLGLSGIGKVNAAMNLT SLLTKEKIDVIFMTGSAGSLQDDVHRKDVILVNDFAYHDAHCVSAGEYVEGQIPREPATF KLNSPEREAFKKYLGEEDVDFKEGLVVTGDTFVQSEEQKELIKKNFPEALGVEMEGAAFA QVARHFKTPLVAMRAISDNGDANADNDFDKFVKEVGAKAAKLISDYVEKMN >gi|256541467|gb|ACPV01000007.1| GENE 68 61169 - 62326 1137 385 aa, chain + ## HITS:1 COG:BS_yrvO KEGG:ns NR:ns ## COG: BS_yrvO COG1104 # Protein_GI_number: 16079805 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Bacillus subtilis # 1 346 1 344 346 353 52.0 3e-97 MREIYLDNAATTPMSPKVIDIITDEMKNDFGNASSTYELGRRARNVIDRARHQIAQDINA QDGEIIFTSGGSESNNTAILGTAYARKNIGKKIITTPIEHPSVLNPMKRLENEGYNIVYL NVDENGQISLEQLKKELTPDTILVSIMAVNNEVGTIMPLKEIGAMVKDSNAYFHVDNVQG MGTIKIDVKDMNIDFLSVSAHKINGPKFLGFLYENADIDIPNLILGGEQETKRRAGTENV PGIAGFGEAVREVSEIGRDALQKKYAHYQDIILKELDDHQINYEINGGYGPGYSHHVLNL HLNGVSTTSLQTNLDLNGFAVSGGSACTAGSLEPSHVLIACFGENSPRINESIRISFGRY NTDEEIEQFAQELVKIVQRIQSKNK >gi|256541467|gb|ACPV01000007.1| GENE 69 62374 - 62715 491 113 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00841 NR:ns ## KEGG: LCRIS_00841 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 113 1 113 113 196 99.0 2e-49 MANTVVINGDKRKFTLNLELKLYALIDAGFVKTAKGNFNYEHPLYNDSPYNAPTKLKMTI NKDLSHLTMVITDRNGLQKVNIFKNKQLAPTVELLDYILKDLEERKILLEVKD >gi|256541467|gb|ACPV01000007.1| GENE 70 62723 - 63850 1428 375 aa, chain + ## HITS:1 COG:L52034 KEGG:ns NR:ns ## COG: L52034 COG0482 # Protein_GI_number: 15672819 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Lactococcus lactis # 5 373 15 382 384 497 67.0 1e-140 MVDNSKTRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDSGVCTATEDYEDVK KVADKIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAMDLD ADYIAMGHYAKTVKDTNGVTHMMRPKDGNKDQTYFLSQLSQEQISKVIFPLANLTKPQVR EIALANGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPDGKVVGEHAGLMYYT IGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLNASDMSFFTGKPD HDFEMHCTAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVLYKGEECLGGG NIDAAYQEEKQLQLV >gi|256541467|gb|ACPV01000007.1| GENE 71 63943 - 64602 740 219 aa, chain + ## HITS:1 COG:SP0984 KEGG:ns NR:ns ## COG: SP0984 COG0406 # Protein_GI_number: 15900859 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 208 1 204 206 155 40.0 7e-38 MQIYFVRHGKTEWNLASRFQGGHGDSPLLPQSLEDIKKLGHHLQGTKFRGIFASPLDRAF NTAQGIDDAMNANLPVVIDERLREFNLGDMEGMKFGDAEKKFPKQMDNFWHHPDKYDPTE LHGEDYPHVIARGKAFAQEMAQRFPDDDDKILAVSHGAALSAIMGGLLGYPLKDIRKNGG LSNTSLTVLETLDGGKTFKPVVWNETSYLGRKLSKTDSL >gi|256541467|gb|ACPV01000007.1| GENE 72 64602 - 65252 625 216 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00844 NR:ns ## KEGG: LCRIS_00844 # Name: not_defined # Def: TPR repeat protein # Organism: L.crispatus # Pathway: not_defined # 1 216 1 216 216 325 100.0 8e-88 MDQKIAQLYDEGKVEQAIHLLIKKIDQHPQQVANYLQLSTYLIEQGSLDQAQKLLEQAQH LVKEPQELNYNLAVCYYMQGDFDKALALLDQIPNDDLTLYQKALTYLKLGQGQKALAYAL TIKKIDERIQELLGDIWLSLGENQQAQQMYLAIPDNKKNAKVYFLLGVTTLEKDRDQAQK YFAQAKQMDAKYYQQAMNQYASIMKMLNDKEKKNYE >gi|256541467|gb|ACPV01000007.1| GENE 73 65245 - 67614 2544 789 aa, chain + ## HITS:1 COG:BS_yrrC KEGG:ns NR:ns ## COG: BS_yrrC COG0507 # Protein_GI_number: 16079801 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Bacillus subtilis # 6 709 18 735 798 471 38.0 1e-132 MNEFTGKVNGIVFENSKDLYKILDVEIIGTLSDYSRPDIKVTGNFGDIQINSSYRFEGKL VMHEKFGLQFRANNYKQVLPHEEGSLTKYLSSNKFPGIGKKAATTIIDELGLNALDVLKE SPAKIDKLSLTRKQKDSLLAGLNAMDSYSEVILKLAKYGINKRIAGRVYQLYHGEALAKL EKDPYAAVNDISGFAFKTADMMGSQLDIASDDPRRIKGAVYQVLLDALNGEGDTYVGLAE LLTEASKLLQINQFDPIASCINSLQEAGKVIVDGENAALQNIYQTEVDIARLMKNLVEKK EDKKREQYDDKKVEQAIKDAEKELKIHYDDTQKLAIKNAVNQPISILTGGPGTGKTTIIN GILLVLRKLAEIPSSALYSEDPPFLLAAPTGRAAKRMGEITGISAKTIHRMLGLGIGDTN TQDLNELNGEILIVDEMSMVDMFLFKQLLASIHDTRHIVFVGDKDQLPSVGAGNVFSDLI KSQAFPTTILKQIHRQGDDSTIITLAHDVNEGKDQQALFKKTNNYSFISCRPELVGDAVG QIVKLALKRGFAKDDIQVLSAMYLGNGGVTNLNNVIQAILNPSQPKSKVLEAHNEVFRIG DRILQLQNNPEKDIYNGQIGKIISIDEDDAKECMIADFDGREVAFSRKDLNDLTRAYAIT IHKSQGSEFPLVILNLTMQNFVMLKRNLLYTAITRAEKNLVLVGDPRAFVAAFKTPGNDR KNGLAAKICQQLGITKSLDKSDQSKQHEKAQEMENETDKAEVAEDFVLTSEKIYSGEIDP MIGMENIKL >gi|256541467|gb|ACPV01000007.1| GENE 74 67721 - 69358 999 545 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00846 NR:ns ## KEGG: LCRIS_00846 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 26 545 1 520 520 941 99.0 0 MDITIITLTIGLLTYYFFQKRKKKKMKKIELSVTDKKEITKIEKIAGKRLPYRFPNHKNL TFQIIELMRPGYIKRRIFDNKGHCHYLIKYYLDRSVAELVEFGETDGHYWRKTSWNGETK VTYHYGKHEFNELDEITKNLRYYGSIVKEGRNKILPLENDLNQYVNELENHASYQKAWIT HKKVTDSQTVHDAMIVEKTLLNNKRDLKRALALQNVLRIRAINSGYKVYNQKVNAFQKRM TELHLNQIKHLRPMNILSQRDLRHLSNLLAGAAAEELVNSRLREVQTGKEIIHNLLLPYP YEKKNSLGSNQIDHVIITTSGIFCLETKARTSKNGQYNVQADYDQIADQVAKHKESIKYV LEKSNNPVIINLLRRLPNIDQLIRNVVVFVSRTDDEFTLTDSNRYQKMEIDVVQLADIQS LLVKAKTGIGLQPDEIAAIKEEMDNSKQLQEEKNYQENVLFFEDQESTLTQKQVEEQLYH ANQVIKHIDQINGLLGNYLQEAREWQKQYQKYRYWKKFYDQVHDFVDQDQYYQNHNSKRD ILDKI >gi|256541467|gb|ACPV01000007.1| GENE 75 69384 - 70229 740 281 aa, chain - ## HITS:1 COG:L39484 KEGG:ns NR:ns ## COG: L39484 COG1597 # Protein_GI_number: 15673780 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Lactococcus lactis # 1 261 31 281 302 120 31.0 2e-27 NIPFKRQKSHYPGELVVLAQNYANLHLSSEHVLIVVGGDGSFNEVLNGIKTSNYPETAIT YLPAGTGNDFARGAGLTADPRQLINNLLRDPEPEQVDCGFFTSNIKQIPKGYFVNNFGIG FDAFVVHQSNHEQLKKHLNHLNSGNMIYGLNIIKALIKQDTFTVTVKTKNETLRYGDAYF VTTTNHPYFGGGFAILPKADIYSHHLDTVIVEKPSLRKFLWLFGKLIKDGSHVNAPEFHY IEAKEILVQTNKSEYAQIDGEDIEKQPFKVTFKVDHFNLLK Prediction of potential genes in microbial genomes Time: Wed May 25 05:06:38 2011 Seq name: gi|256541466|gb|ACPV01000008.1| Lactobacillus crispatus 125-2-CHN cont1.8, whole genome shotgun sequence Length of sequence - 2178 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 114 - 141 0.1 1 1 Op 1 7/0.000 - CDS 149 - 1828 1562 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 2 1 Op 2 . - CDS 1835 - 2056 292 ## COG5503 Uncharacterized conserved small protein - Prom 2116 - 2175 12.7 Predicted protein(s) >gi|256541466|gb|ACPV01000008.1| GENE 1 149 - 1828 1562 559 aa, chain - ## HITS:1 COG:lin1026 KEGG:ns NR:ns ## COG: lin1026 COG0595 # Protein_GI_number: 16800095 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Listeria innocua # 3 557 4 554 555 702 60.0 0 MRIKNNEVAVYAIGGLHEIGKNMYCVQYQDEIIIMDCGIKFPEDNLLGINYVISDYSYLI KNRKKIKALVVSHGHEDHIGGIPFLLEKIPEIPVYATPFALSLIRGKLEEHGILKTTELH EEHEDTVLKFKKLSVSFFRTTHSIPDTLGIAVHTPLGAVVFTGDFKFDLTPVMDQPAPDF QKMAQLGNEGVLALLSDSTNAEVTQFTKSERFVAKSLHNIITGIHGRIIFATFASNLYRV STAIQAAIDTGRKVAIFGRSMENGVDNGVDLGYLNLPKDLIVDADEINKLPPEKVMILCT GSQGEPLAALSRIANGTHRQISLQPGDTVIFSSNPIPGNTLSVNHLINKLMEGGADVIHG RVNNVHTSGHGGQEELKMMVRLVKPKYMIPVHGEYRMQVIHTQLAQQAGVPAENTFVLSN GEVVCFGPDGARITGHIPAGDVYVDTSGTADVGNVVVHDRQILSEEGLVVAVATVDYKHK RVLAGPDILSRGFVYMRESTELISQAQKHVYHVLRNEMAKSNRPKASDIKKAITENLSDF LYSKTERRPMILPIIIEKK >gi|256541466|gb|ACPV01000008.1| GENE 2 1835 - 2056 292 73 aa, chain - ## HITS:1 COG:SPy1875 KEGG:ns NR:ns ## COG: SPy1875 COG5503 # Protein_GI_number: 15675694 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Streptococcus pyogenes M1 GAS # 1 70 1 76 76 58 48.0 4e-09 MIYKVLYQKDKIVNPRRETTQTLYMEADNMVEARSMVEDSTPYNIELIQELTGNSLTYEK EHADFKLTTFDKK Prediction of potential genes in microbial genomes Time: Wed May 25 05:06:50 2011 Seq name: gi|256541465|gb|ACPV01000009.1| Lactobacillus crispatus 125-2-CHN cont1.9, whole genome shotgun sequence Length of sequence - 39949 bp Number of predicted genes - 39, with homology - 39 Number of transcription units - 18, operones - 10 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 149 - 177 1.0 1 1 Tu 1 . - CDS 200 - 745 727 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 797 - 856 5.5 + Prom 743 - 802 7.7 2 2 Tu 1 . + CDS 1007 - 2851 2498 ## COG1217 Predicted membrane GTPase involved in stress response + Term 2869 - 2918 7.4 3 3 Op 1 . + CDS 3212 - 4135 826 ## COG0772 Bacterial cell division membrane protein 4 3 Op 2 . + CDS 4132 - 4476 320 ## LCRIS_00854 hypothetical protein 5 3 Op 3 14/0.000 + CDS 4473 - 5021 350 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 6 3 Op 4 4/0.000 + CDS 5024 - 5509 290 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 7 3 Op 5 . + CDS 5502 - 6545 391 ## PROTEIN SUPPORTED gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 + Term 6563 - 6600 3.2 8 4 Op 1 4/0.000 + CDS 6620 - 7309 673 ## COG1555 DNA uptake protein and related DNA-binding proteins 9 4 Op 2 4/0.000 + CDS 7386 - 9566 922 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 10 4 Op 3 . + CDS 9563 - 10549 771 ## COG1466 DNA polymerase III, delta subunit + Term 10555 - 10604 6.5 - Term 10532 - 10599 10.2 11 5 Tu 1 . - CDS 10613 - 10870 405 ## PROTEIN SUPPORTED gi|227877359|ref|ZP_03995430.1| 30S ribosomal protein S20 - Prom 10902 - 10961 5.2 + Prom 10912 - 10971 5.8 12 6 Op 1 2/0.000 + CDS 11072 - 11341 461 ## PROTEIN SUPPORTED gi|227877360|ref|ZP_03995431.1| ribosomal protein S15 + Term 11364 - 11400 4.0 + Prom 11374 - 11433 5.7 13 6 Op 2 . + CDS 11499 - 13256 2037 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 14 6 Op 3 . + CDS 13287 - 14120 564 ## LCRIS_00864 BS_ysoA-like protein with TPR repeats + Prom 14188 - 14247 3.9 15 7 Tu 1 . + CDS 14310 - 15500 1329 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 + Term 15525 - 15564 2.1 + Prom 15542 - 15601 6.9 16 8 Op 1 4/0.000 + CDS 15647 - 16978 1866 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) + Term 17006 - 17036 1.8 + Prom 17020 - 17079 6.0 17 8 Op 2 4/0.000 + CDS 17107 - 18372 279 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 18 8 Op 3 . + CDS 18362 - 18952 621 ## COG0218 Predicted GTPase + Term 18960 - 18998 3.0 + Prom 18989 - 19048 7.8 19 9 Op 1 4/0.000 + CDS 19131 - 19334 242 ## COG0531 Amino acid transporters + Term 19368 - 19411 1.1 + Prom 19443 - 19502 4.2 20 9 Op 2 . + CDS 19560 - 20576 1137 ## COG0531 Amino acid transporters + Term 20594 - 20626 4.0 - Term 20582 - 20614 3.2 21 10 Op 1 . - CDS 20620 - 21624 754 ## COG0253 Diaminopimelate epimerase 22 10 Op 2 . - CDS 21633 - 23018 1227 ## COG0527 Aspartokinases - Prom 23135 - 23194 10.4 23 11 Op 1 . + CDS 23447 - 24757 1531 ## COG0019 Diaminopimelate decarboxylase 24 11 Op 2 6/0.000 + CDS 24772 - 25479 777 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase 25 11 Op 3 . + CDS 25481 - 26635 894 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 26 11 Op 4 6/0.000 + CDS 26637 - 27563 791 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 27 11 Op 5 . + CDS 27570 - 28349 849 ## COG0289 Dihydrodipicolinate reductase 28 11 Op 6 . + CDS 28361 - 29536 1151 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 29 11 Op 7 . + CDS 29536 - 30594 1114 ## COG0136 Aspartate-semialdehyde dehydrogenase + Prom 30616 - 30675 5.4 30 12 Tu 1 . + CDS 30757 - 31800 823 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 31808 - 31851 6.2 - Term 31794 - 31837 6.2 31 13 Tu 1 . - CDS 31843 - 33453 1456 ## LCRIS_00882 triacylglycerol lipase + Prom 33700 - 33759 9.9 32 14 Op 1 . + CDS 33790 - 34056 419 ## COG3976 Uncharacterized protein conserved in bacteria + Prom 34095 - 34154 3.8 33 14 Op 2 . + CDS 34213 - 34581 172 ## LCRIS_00884 hypothetical protein + Term 34586 - 34612 -1.0 - Term 34573 - 34599 -1.0 34 15 Tu 1 . - CDS 34607 - 35533 951 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 35646 - 35705 8.9 + Prom 35517 - 35576 4.8 35 16 Tu 1 . + CDS 35665 - 36321 561 ## COG4912 Predicted DNA alkylation repair enzyme + Term 36324 - 36381 12.4 - Term 36311 - 36370 8.6 36 17 Op 1 3/0.000 - CDS 36385 - 37833 1590 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 37 17 Op 2 . - CDS 37920 - 38624 505 ## COG2188 Transcriptional regulators - Prom 38648 - 38707 3.3 + Prom 38873 - 38932 10.2 38 18 Op 1 8/0.000 + CDS 38990 - 39328 501 ## COG1440 Phosphotransferase system cellobiose-specific component IIB 39 18 Op 2 . + CDS 39369 - 39740 527 ## COG1447 Phosphotransferase system cellobiose-specific component IIA + Term 39744 - 39803 9.4 Predicted protein(s) >gi|256541465|gb|ACPV01000009.1| GENE 1 200 - 745 727 181 aa, chain - ## HITS:1 COG:lin1043 KEGG:ns NR:ns ## COG: lin1043 COG0242 # Protein_GI_number: 16800112 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Listeria innocua # 1 179 4 181 183 177 51.0 1e-44 MKDIVRDGDPVLRQVAKPLTFPFSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAA PQVGEGVQMAALLVPDDQGKIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVP RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKQDPFALKEDTVVI S >gi|256541465|gb|ACPV01000009.1| GENE 2 1007 - 2851 2498 614 aa, chain + ## HITS:1 COG:SP0681 KEGG:ns NR:ns ## COG: SP0681 COG1217 # Protein_GI_number: 15900582 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Streptococcus pneumoniae TIGR4 # 4 613 3 612 613 849 69.0 0 MSEKRRDDLRNIAIIAHVDHGKTTLVNQLLKQSDTLPEHMNLEDRAMDSNAIERERGITI LSKNTAVKYKDTTINILDTPGHADFGGEVERVMHMVDGALLLVDAYEGPMPQTRFVLKKA LEAGVKPIVVLNKIDRPGARPKKVLDDVLELFIELGANDEQLDFPVVYASALNGTSSYDP DPSTQKETMDPIFDTIIKNIPAPVDNSDEPLQFQITMLDWDDYVGRIGVGRIYRGKVKVS DNITVMKRDGSTQNFRVTKLFGYFGLKRNEIKEAKAGDIIAISGINDIYVGETIASAEHP EALPLLKIDPPTLQMDFVANDSPFAGREGDQVTPKKLEDRLIRQTRTDVSLKVEPTDQLN AWTVSGRGELHLSILVEELRREGFELQLSRPKVIYREIDGTMCEPFESVQIDTPDEYVGS VIDSLSQRKGEMKNMESTGNGQTRLEFLVPSRGLIGYNNEFMSQTGGYGIMNHTFEAYKP VVKNWNPGRRNGALVSINQGQSTTYSLQSVEQRGELFIGAGVEVYEGMIVGQSSRERDIA VNVTKGKNLTNTRAAGKDHAAAIKTPRTLTLEEAIEFLNDDEYCEVTPESIRLRKKILNT SERQKSDKKRNRAN >gi|256541465|gb|ACPV01000009.1| GENE 3 3212 - 4135 826 307 aa, chain + ## HITS:1 COG:SPy0609 KEGG:ns NR:ns ## COG: SPy0609 COG0772 # Protein_GI_number: 15674690 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 297 92 404 434 190 35.0 3e-48 MLGWLVFLRFAHGSSAAVNGAVGWINLGFINLQPLEVTKLALVIYLSYVLDRRDGKLVKG KIKHNLSHPAILAAFLMCLVIVEPDFGGTAILFMITLVMFSVSGVPTKLALTWLAGIVIL VTAVFFIVVAWNPGFLQRSYQFQRLMSFLHPFELEQKGGAQLVNSYYAIHNGGLFGVGLG NSMQKRGYLPEPYTDFILSITAEEVGVILTILLVGLLFYLMWQIMEVGVHAVSQFDALIC FGVTTIIFTEAFFNIGAVLGLLPITGVTLPFISYGGSSMIVLTAAIGLVLNVSANEKMLQ EKDETVA >gi|256541465|gb|ACPV01000009.1| GENE 4 4132 - 4476 320 114 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00854 NR:ns ## KEGG: LCRIS_00854 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 114 1 114 114 176 100.0 3e-43 MSINKEIESTHLIKRVALIIYLKSVSDQYKLRHFGDIVYFSKKMKYCVLYVNRNECNEIK GQIAHLDFVNHVEISAEEEVNLDSQHIENQLAEMAQKAEKKLQLEQEKSENQLK >gi|256541465|gb|ACPV01000009.1| GENE 5 4473 - 5021 350 182 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 180 13 193 199 139 39 3e-32 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQFFQGGNVLDLYAGSGALGIEAV SRGCDHASLVDINHAACTIIKKNVALTKEEQRFNVYNMRSSAALKLFSENDEKFDLVFLD PPYAKEKIAKDMLQMVKSNLLNDHAIVVAETDDHTELGEITGFSLIKEHHLGKTIVRIYR KD >gi|256541465|gb|ACPV01000009.1| GENE 6 5024 - 5509 290 161 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 5 157 7 158 164 116 37 2e-25 MTIALFPGSFDPITNGHVETAKKAAEIFDKVYVVAMTNTAKKYLFTPEERADLIRDALRE IPNIEVLERPEEVTVNLAHELHAKVMVRGVRNSADFRYEQEIAGINKKLAPDVNTVLLFT SPENSFVASSMIKELARFDEDVSLFLPKKAAIALREKLKHE >gi|256541465|gb|ACPV01000009.1| GENE 7 5502 - 6545 391 347 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 [Bacillus selenitireducens MLS10] # 1 343 1 343 350 155 31 5e-37 MNNKKNNQSKKHLRNWLLALIALVLLVVLAVWPTDYYIEYPGEAMPVGQFIKSSNKRPNN FYLVTVSITSRPAPVLQYLWSFTRPYDERVSSKELLGGQTSAQYNELQNWYMETSQQNAI YYAAKKAGNQHSLKYLGVYVMEVQKNSSFKNKLQIGDTVLGANGHRFSSTEEMMDYLRKQ KIGARVTISVLRGKQEKHFTGKIVKVKGTNKPGIGIQLVEHVVVKTKPKLKINAGEIGGP SAGLMFTLESYEVFTKQNLSKGHKIAGTGTISPTGKVGIIGGVDKKVVAASREGAEVFFA PTDSTSVKKSETNYAVAKRTAKKIHTKMKIVPVSTFDDALNYLKTHY >gi|256541465|gb|ACPV01000009.1| GENE 8 6620 - 7309 673 229 aa, chain + ## HITS:1 COG:BS_comEA KEGG:ns NR:ns ## COG: BS_comEA COG1555 # Protein_GI_number: 16079613 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Bacillus subtilis # 57 229 44 204 205 111 41.0 1e-24 MNFEKVKEFVLEKKAYLIGAIILVVGFYGLKKGDHQENAAAVQDQVMQSSTSSSGATTNT NAVTSSSSTTVSKTVTCDISGAVKHQGVYTLKNGARLQELIEAAGGTTARAQLKAINRAT LLKDQDKIHIPYKGEKVENVATAGSADNSQNSGSTSSSSPSNQGDGTKINLNTANVTELQ KLTGIGQKKAEQIIAYREQNGSFKKIEDLMQVSGIGEKTFASLKDQLAV >gi|256541465|gb|ACPV01000009.1| GENE 9 7386 - 9566 922 726 aa, chain + ## HITS:1 COG:SPy1408_2 KEGG:ns NR:ns ## COG: SPy1408_2 COG2333 # Protein_GI_number: 15675328 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Streptococcus pyogenes M1 GAS # 424 708 1 294 299 216 40.0 2e-55 MVQKIVALFFLGYFLLLLVQKYRVSLKIVSLIVGAFLLLIFLSKPKTNFVLTQQSQLRIY PDQVRIKDDYLTGVGNFAQGKILIGGKVTDVQKELLKHGNPILVTEINGECNSIEPATNI GEFNFQNYYQAKQIYQKLKYSSCQMKLLSITDFGDQLHQLRFELQNYFAKMPQLLGFFAS ELILGENNAQENQEILNNYRDLGVIHLLSISGLHVGIYVLLISVFCFNLKLTDEETFVCC TLVLLLGIFLSNGQAGFVRASLTYFLGKICKFKKYHVASIDLLGLTCILHLLVVPRLFLA TGALLSYILALGLQLTDKFGSFKQAILLNILLTPLLLLFFYQVNFLTVIFNMLVVPYFNW IVLPIAFFNIVTFGLTKDFAPVLEKVLELGEKIIGQLSATKLGLLTFGQINWWQCLLLLI VTIILIVSLREKVNWRFNSKKIMVGLLSLYVIFFSMIHFPLRGQVTFIDVGQGDSILVTT PFPRKVYLIDTGGKLNFSGKKQTPQIDRITIPFLKSQGINTIDGVFVSHQDADHVGDLGP LLEQVNVKKLFMAEGLIKNPSFQKRLDGRVKDTKLLELLAGMRVKEPQITFNVVYPYQAG EGKNEDSLSLLFRVANKNWLFTGDLGQDGEKEIMQRMKLQVDYFKLGHHGSKTSSNPDFL RAIHPKQVFISAGRKNRFGHPHQETLTTLTQQQIPWVSTQDCGMISWYYGGLQSPRFSYF LKRDKK >gi|256541465|gb|ACPV01000009.1| GENE 10 9563 - 10549 771 328 aa, chain + ## HITS:1 COG:BS_yqeN KEGG:ns NR:ns ## COG: BS_yqeN COG1466 # Protein_GI_number: 16079610 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Bacillus subtilis # 31 287 35 293 347 114 31.0 2e-25 MTLLSLFKNTNNNNPHTLIWGADDFLNDYLVRSYAKEDRFKDLEHVTVDCESDGLDELIA SLTESSLFSEQKFIVVKNPFFLTAKVSKKLQKQIDDLQKIFENLADLEDVVVIVASYEKI DRRKKLTKTVLKQFNVVEPQIRPYEVASTTKALIKDEGYIITQSALQLLIERSDQVIDTI LSNYQKLKMVATDNKITEKSVMQNVDLSLAQNIFAILESALDKNYREAVERLDNQLREGT NPIQLLAVFENQLELILVVKILAQRGRSEPQIVKELGVHPYRVKLALRNRLKIDKLENLL RDAIDLEFKYKNGTYREDNFLKLFILNV >gi|256541465|gb|ACPV01000009.1| GENE 11 10613 - 10870 405 85 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227877359|ref|ZP_03995430.1| 30S ribosomal protein S20 [Lactobacillus crispatus JV-V01] # 1 85 1 85 85 160 98 1e-38 MPQIKSAIKRVKAQNATNERRASELSKLRTAIKKFKNAVESDSKEDVSKLHLEAERALDK AASKGLIHKNKAARDKSRLNKLANK >gi|256541465|gb|ACPV01000009.1| GENE 12 11072 - 11341 461 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227877360|ref|ZP_03995431.1| ribosomal protein S15 [Lactobacillus crispatus JV-V01] # 1 89 1 89 89 182 100 4e-45 MAISKTEKEKIMKEYATHEGDTGSVEVQVALLTADINNLTDHMKSHKHDHHSYVGLLKKI GHRRNLLRYLENNDINRYRELIKKLGLRR >gi|256541465|gb|ACPV01000009.1| GENE 13 11499 - 13256 2037 585 aa, chain + ## HITS:1 COG:SPy1020 KEGG:ns NR:ns ## COG: SPy1020 COG0595 # Protein_GI_number: 15675021 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pyogenes M1 GAS # 5 554 4 552 553 565 52.0 1e-160 MADQIKIMILSGVREQGKDMFAVQVNDEIFVLDAGLKYPDSSLFGIDVVIPDLDFFEQYG DRVAGIFLTHGHADSIGALPYILRKYDIPVFGSQLSIELAKIEVQRENKRRKNSLFHVID ADTEIDFKNASISFFHTTHSIPDSLGIDVHTPAGEIVYTGDFKFDPTAALNYRTDMDRLA EIEQKGVLALLSDSSNAEASFPNASEQDIGKFVTNVFRNAKGRIIVAAKASNLNRVQEVL NAAAATGKRVLLTGRDLAKIVRTSMKLGYLDVPEGLLMRVKDLKTVPDEQTVILETGRMG EPLNSLQKMAKKRHSMITIHKGDLVFIATTPSHAVETMVAETSDLVYKAGGTVIQLGRNI HTSGHATGRDLQLLITTLKPKFLIPVIGEYRLLEVVRDLAIKAGMNPKDIYITKNGDCLE YDFKQKRFFLTDPVPGEDTMIDGSGVGDVGNIVLRDREVLSDDGIFIAVVTIDRKKKKII AEPKVTSRGFVYIKANRQLMSDSIDVIKKAIQANFEHKKFDWTELKQDIRGDLEKFLYKK TNRRPVILPVVMEVNQNRHRAMQKRNEKAQNDNKNHAKDENKKNK >gi|256541465|gb|ACPV01000009.1| GENE 14 13287 - 14120 564 277 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00864 NR:ns ## KEGG: LCRIS_00864 # Name: not_defined # Def: BS_ysoA-like protein with TPR repeats # Organism: L.crispatus # Pathway: not_defined # 1 277 1 277 277 496 98.0 1e-139 MTSVSQQNLLKLAEEDERKGDLEAAIQNLEEALREEHSLDVILKLCKLYCANKQEDQAYA LIKEEPDLFSDQRVFKSYCQILAKNNFFIEALQLKNLVGVDLSEKVKPASEEKQRQIMQN FKQREQVTQSDYESLHKLNLPNFKAFARSVLLDPTPDFAVRLSLCEDLVRLGLEEKFEIW VIGQMESFIPANTLLLEKEPKYREIISSIGSKFHNSPSQLPLMLGEVNLVLGSLYPKINQ YIDEPDSFASDLVSFLQRKDGRSHQKLLEKIYKYLPQ >gi|256541465|gb|ACPV01000009.1| GENE 15 14310 - 15500 1329 396 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 4 396 3 407 407 516 63 1e-146 MAEKEHYVRTKPHVNIGTIGHVDHGKTTLTAAITTVLADKGLAKAEDYSQIDAAPEEKER GITINTAHVEYETENRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREH ILLARQVGVNYIVVFLNKCDLVDDPELIDLVEMEVRDLLTEYDYPGDDIPVVRGSALKAL QGDKEAQEQILKLMDIVDEYIPTPERQTDKPFLMPVEDVFTITGRGTVASGRIDRGTVKV GDEVEIVGLVDKVLKSVVTGLEMFHKTLDLGEAGDNVGVLLRGIDRDQVVRGQVLAAPGS IQTHKEFKGQVYILKKEEGGRHTPFFSDYRPQFYFHTTDITGEIELPEGTEMVMPGDNTE FTVKLIKPAAIEKGTKFTIREGGRTVGAGQVTEILD >gi|256541465|gb|ACPV01000009.1| GENE 16 15647 - 16978 1866 443 aa, chain + ## HITS:1 COG:SP0400 KEGG:ns NR:ns ## COG: SP0400 COG0544 # Protein_GI_number: 15900319 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Streptococcus pneumoniae TIGR4 # 1 423 1 424 427 414 55.0 1e-115 MSVKWEKTGKTTGDLTFDISQDEIKLGLDQAFRRVKKNLRVPGFRKGHVSRVIFDQYYGE EALYEDALNIVLPNAYSAAVKEAGIKAVGQPQIVPVSMDKDKDWTMKATVTVEPEVKLGD YKGIEVPKQNTRVYQKDIDAELDKRREQNAELVLKKGKAEKGDTVTIDYKGTIDDKPFEG GSAENYSLELGSGAFIPGFEDQLEGHEAGDDVDVVVTFPEDYGAKDLAGKEAHFATKIHE VKSKQLPKLDDEFAKDVDDSVDTLDDLKEKIKKDLKEQKEQQANDAIQEAAIEGAVSNAT IDEIPDAMIQEDVDTQLNQYLGNMQRQGIDPQTYYKLTNTNEQQLRSQFEKNAAERVKTN LVLEAIVAAEDLKATKEEIDKEIKDLASEYNMDEKMVRNTLSDDMLGHDITVRKAMDLIT DNAKQVAKSKLENKEDDDKKKSK >gi|256541465|gb|ACPV01000009.1| GENE 17 17107 - 18372 279 421 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 154 397 258 448 466 112 30 5e-24 MANQFTDQEEIKCAFCGKTQDQVKKMIAGNGVYICNECVDLAKKIIDDELRADSLKAARE LPKPVEIKKELDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGS GKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIYI DEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKMDTTNI LFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADKINADDWTRHLTTADLVKFGMIPEFIG RIPIITTLDKLSSKDLVRVLTEPKNALVKQYKKLLSLDDVNLKFTDGALKAIADLAIQRN MGARGLRTIIENSIMDIMYETPSEEDIETVEVTKDVITKHAKPKVIRKNTDNKEQVSVND H >gi|256541465|gb|ACPV01000009.1| GENE 18 18362 - 18952 621 196 aa, chain + ## HITS:1 COG:SP1568 KEGG:ns NR:ns ## COG: SP1568 COG0218 # Protein_GI_number: 15901411 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pneumoniae TIGR4 # 10 194 12 195 195 199 53.0 3e-51 MIIESSSYAVSAVREDQYPKDNLPEIALAGRSNVGKSSLINTLLKRKNLARTSSQPGKTQ TLNFYKVNEKFYLVDVPGYGYAKVSQKKRQEFGEMIQDYLETRPNLKGLIILVDSRHEPT KDDIAMYDYAQYLNIPILVVCTKMDKIKKSQTNKVMSGLKKKLNLNYDHVTVLTFSSVTK LHVTELSNWIEKRINE >gi|256541465|gb|ACPV01000009.1| GENE 19 19131 - 19334 242 67 aa, chain + ## HITS:1 COG:L58790 KEGG:ns NR:ns ## COG: L58790 COG0531 # Protein_GI_number: 15673791 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 1 64 88 151 579 71 51.0 4e-13 MIITTVYGFGNVSVSYEQMTYAGIIWFILAGVCFFFPAGLMMAEYGSAFHDAQGGIYSWL AGSVGQK >gi|256541465|gb|ACPV01000009.1| GENE 20 19560 - 20576 1137 338 aa, chain + ## HITS:1 COG:yjeM KEGG:ns NR:ns ## COG: yjeM COG0531 # Protein_GI_number: 16131981 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 327 173 497 514 240 41.0 3e-63 MSSIGGWFMIVMNAVFILASLTVLIMNHGQLAQPITGWQSFIISPNKSFQTPITIISFVV YAVFAYGGMETVGGVIDSMKHPEKDFPKGLIIGSLFTIISYVLMIFMTGFSVNYQKDILA ANANTGNITYTVYGTLGKAFGTALHLDPNTSLLIGKFFTRAIALSGLMGMTGALFVLLYS PIKSFIMGSDPRLWPKAATKLNKHGIPANAMWAQTVFVCLLIAVVSFGGSAATSFYQILT DMGNVAATAPYIFLIGAFPFFLKKDYPRKFRVFTNYKWTVALVVFVELIVCTGIIFTVLQ PVLEHRYATAFWTSFGPIFFGLVAYRVSKKKHGLKDLD >gi|256541465|gb|ACPV01000009.1| GENE 21 20620 - 21624 754 334 aa, chain - ## HITS:1 COG:lin2126 KEGG:ns NR:ns ## COG: lin2126 COG0253 # Protein_GI_number: 16801192 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Listeria innocua # 2 327 4 324 329 257 42.0 2e-68 MINLFKVHGSQNHFFILDQTQFEHELSDAELKNFTQKITNPQTGLLHGADGVLVVNHPVH SNSLGQMRVINADGSEASMCGNGLRTVARYLSEKTGKDNFLVDTMNASLRVRREKDFASN VPAFAVEISPVRFNKEALPFDNLGQERIIDAWLPEIYPGLRFTSIAVPNPHLISFVNQAE ITGPILGIVGKKLNSNNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGMSATS LALTLTHPEIGNLNTPISVYNPGGMVKTIVHYEKNSYWIELIGNATFTHRIKLSEADLRK GDFSNVQIQKTAEQSAYEKFIANLPKFNDITTLA >gi|256541465|gb|ACPV01000009.1| GENE 22 21633 - 23018 1227 461 aa, chain - ## HITS:1 COG:BH1500 KEGG:ns NR:ns ## COG: BH1500 COG0527 # Protein_GI_number: 15614063 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Bacillus halodurans # 11 460 1 448 456 402 45.0 1e-112 MISENKRSFEMKIVKFGGSSLATGESVAQAIQIILSDPQRQVMVVSAPGKRNTTDIKVTD LLIKYADLALKHKNCVEIVNKIFSRYQEIGHYFGLADTELSIIKQILLELPNQGYPNEKY LLAAFKAHGERLNARLITLILHHQGINSRFLDPAEAGLIVTGEPNDAIVNPESYLNLDQI KIKADERIVFPGFFGMTPSGNIATFSRGGSDITGAILARGFHADLYENFTDVNGIFAANP HIIEHPQSIKKMTYREMRELSYAGFSVFHDEALIPAIQGQIPINVKNTHDPSNPGTMIVP EKDFVPDNAITGVTSQKHFSALYLHKYLLNKEAGFTLRILQILYQHNIPYEHMPSGIDDI TIIFNNDFLNDQLIDQICNEIQATINPDQLEWIEDYAIIMVVGEGMRQKHTISRQIIDSL GDHDISPQMINQGASQISIMIGTKKEKADEAVKIIYQKFFN >gi|256541465|gb|ACPV01000009.1| GENE 23 23447 - 24757 1531 436 aa, chain + ## HITS:1 COG:BS_lysA KEGG:ns NR:ns ## COG: BS_lysA COG0019 # Protein_GI_number: 16079395 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Bacillus subtilis # 11 431 10 430 439 490 56.0 1e-138 MNSQIAVDQINEQGHLTIGGVDIVELAQKYGTPLVVYDVDQIRRQIRAFKKVFEEENMAY AVSYASKAFAAIAMYQVIAEEGAYTDVVSAGELFTAIKANFPMERVSFHGNNKSLTELEM AVKNHVGKIIIDNFHEIQLLAQVLKKYDATISVMLRIAPGISAHTHEYDQTGQIDSKFGF DLESGQAEKALKQVLANPRMKMLGIHAHIGSQIFALNGFEMGAQKLMVVAQDWREKYGYL AQVINVGGGFGIKYTQEDHPLRPEEFVKTIVKVIKTEAEKMNYPLPEIDIEPGRSIVGPA GYNLYTVGSRKDIPGYRSYITVDGGMGDNIRPALYQAKYETVLATDPQAPLTEHVRIAGK YCESGDILAEDQALPQVKAGDLLAMLDTGAYGYSMASNYNRNPRPVVVFAENGKAKLVIK RESLEDLVHLDQSYLN >gi|256541465|gb|ACPV01000009.1| GENE 24 24772 - 25479 777 235 aa, chain + ## HITS:1 COG:lin1010 KEGG:ns NR:ns ## COG: lin1010 COG2171 # Protein_GI_number: 16800079 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Listeria innocua # 1 235 1 236 236 263 63.0 2e-70 MAKLDAKSIIDYIGNAPKKTPVKVFIKGDLAQIDFPKEIENFTEAHSGAIFGDWKDIEPF LKENHQITAYHIENDARNSAVPLLDFKKVNARIEPGAIIRDQVVIGNNAVIMMGAIINIG AEIGANTMIDMGVVLGGRAIVGQHCHIGAGSVLAGVIEPASAKPVQIDDNVMIGANAVVI EGVHVGEGAVIAAGAVVTHDVPAHTMVAGVPAKIIKKVDEKTSSKTELEDNLRKL >gi|256541465|gb|ACPV01000009.1| GENE 25 25481 - 26635 894 384 aa, chain + ## HITS:1 COG:L80177 KEGG:ns NR:ns ## COG: L80177 COG1473 # Protein_GI_number: 15672264 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Lactococcus lactis # 9 384 4 378 384 394 52.0 1e-109 MSVLSESELIQIRRHLHQIPELALAEKETHDYLIEVIQKFKQDYLEVEIPSTLPTAILVL VKGRKPHRTIGYRADIDALPVTEKTGLAFSSKHEGVMHACGHDIHMTVALGLLSYFSENQ PQDNLLFFFQPAEESQSGGMQAYEKRIFHDQFKPDEFYGLHDNPALPAGSIGCRMGTLFA GTTEVNIDILGKSGHAAFPQDANDTVVAAASLIMQVQTIISRSIDPIQSGVITLGKIEAG TIRNVIAGQARIEGTIRGLTQNMILTIDQRLKEICLGIEKSFGVEVKLDLNQGGYWPVEN NPQLTKNFISYMKSQPTVNFITTEPKMTGEDFGFLLTKFPGTMFWLGVGNPDSQLHTATL NPDEKSIQRGVDAIKGFLINRMRQ >gi|256541465|gb|ACPV01000009.1| GENE 26 26637 - 27563 791 308 aa, chain + ## HITS:1 COG:SP1014 KEGG:ns NR:ns ## COG: SP1014 COG0329 # Protein_GI_number: 15900886 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Streptococcus pneumoniae TIGR4 # 9 285 11 287 311 265 46.0 7e-71 MATLIDADLLTAIVTPFDENQKIDFASLEKLVNYLIDQGCNGFVVGGTTGETPTLTHDEK IDWYQHFGQIVNGRVPVIAGTGSNDTATTIAFTNEVAQIKGIDYALVVVPPYNKPDQRSM IAHFSAVNAQTKMPIMIYNIPGRTGVKMEKETVVQLSRLKNIKGIKQCASLEEMEYIIDH KDPNFLVFSGEDTQALPARLLGANGVISVASHLYCKQMRRMFDDLYEGNYPEAGTIQRWL TPKMQALFMYPSPAPVKAALNAQGFIVGGCRLPLVALGDEEKEKLAQHLGLNANALMQKL PLNLGKDW >gi|256541465|gb|ACPV01000009.1| GENE 27 27570 - 28349 849 259 aa, chain + ## HITS:1 COG:L0094 KEGG:ns NR:ns ## COG: L0094 COG0289 # Protein_GI_number: 15673543 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Lactococcus lactis # 4 259 7 258 260 257 50.0 1e-68 MPKKVLIAGFTGAMGQKAVSLVNQLPNFELVAGFAPKAVNEPERYHLPKTAQIFNQLSQI PDHAADIWIDFTTPAAVYDNVYFALTHQIKPIVGTTGLSDDQEATLIELAKKEKLGGLIA PNFGMSAVLLMKFAEEAAKYFPDVEIIEMHHADKKDAPSGTALATAKMIAQNLPEHQTAP DETETLANVRGGDYQGIKIHSVRLPGYIAHEQVLFGGPGEALTIRQDSFDRDSFMSGVKV ALEKVDQLTELVIGLENIL >gi|256541465|gb|ACPV01000009.1| GENE 28 28361 - 29536 1151 391 aa, chain + ## HITS:1 COG:L56488 KEGG:ns NR:ns ## COG: L56488 COG0436 # Protein_GI_number: 15672039 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Lactococcus lactis # 14 391 11 390 391 351 48.0 1e-96 MPELANDLALSKKIQSVKASGIRIFDNKVSTIPGIIKLTLGEPDMNTPEHVKTAAIESIR NNNSHYAPQKGKLELRQAISNYLKKASGVVYDPETEIVVTVGATEAINATLFSITNRGDK VAIPTPVFSLYWPVATLADADYVLMNTSEDNFKLTPERLESTLKEESNIKAVILNYPVNP TGVEYTESEIRALAEVIKAHNLYVITDEIYSTLTYGVKHFSIASVIPERAIYISGLSKSH AMTGYRLGYVAGPAKIMEQIGKVHGLMVTTTTDSSQAAATEALEHGLDDPEKYRKIYQRR RDFVLDELAKMGMQAVRPQGAFYIFAKIPAKYGKNDMQFALDLAFEAKVGITPGSAFGPG GEGYVRMSYASSDENLHEAMERMKNFLRGEK >gi|256541465|gb|ACPV01000009.1| GENE 29 29536 - 30594 1114 352 aa, chain + ## HITS:1 COG:lin1476 KEGG:ns NR:ns ## COG: lin1476 COG0136 # Protein_GI_number: 16800544 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Listeria innocua # 1 352 1 347 347 407 59.0 1e-113 MVKEYNVAILGATGAVGRRMIEQLEQSTIPVKSLKLLASSRSAGTVLKFKDQDLKVEETT PESFDGVDLVLSSAGGAVSKKFLPEAVKRGAVCVDNTSAFRMEPDVPLVVPEVNPEALKK HHGIIANPNCSTIQMVMALEPVRRKFGLKQIIVSTYQAASGAGQAAIDELKKESQDYLDG KDMQADAHILPTKGDKKHYPLAFNLLPQIDVLEDSGYSHEEWKMIHETKKIMLNDMNAKD IKVTATCVRVPVPISHGESVYFTLEDETATAQDIKDAVAAFPGNVLEDDIKHQIYPQPIN ATGKRETFVGRIRPDYENKGAFNMWIVADNLLKGAAWNMVENAEYLVKMNLL >gi|256541465|gb|ACPV01000009.1| GENE 30 30757 - 31800 823 347 aa, chain + ## HITS:1 COG:SA0909 KEGG:ns NR:ns ## COG: SA0909 COG1680 # Protein_GI_number: 15926643 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Staphylococcus aureus N315 # 22 340 81 387 397 99 29.0 1e-20 MSNHAVQAKSYSNKQLRQYTLKMMKKHHLRGSIEIVKNGHAQRVSLGYGYYSKRLKNGNT KLLYPVGSLQKMVTAAIITQLIYQKKFNQNTKISRWYPNLKHANQITVGQLMTHTSGINV IGTESNHGVNFSENGAINWTIAQANARENTGRSKFNYNNANYVLLAGIISKVTGKSYAAN VKQRVIRSLKLKQTDIYQQIPRSKTDAISYLYSGGKNYSASAYANRNVVSQLPGAGNLFS TANDYYKIQSGMQNGKILTKKQFHYLGHLSSKVNTYSGGFYLKKNQTLKVAYGNFGDTHF VNWMQLTTDNQNGIVMFLNQTYGSKNHIRAIGYNILKHIKANTFIKG >gi|256541465|gb|ACPV01000009.1| GENE 31 31843 - 33453 1456 536 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00882 NR:ns ## KEGG: LCRIS_00882 # Name: not_defined # Def: triacylglycerol lipase # Organism: L.crispatus # Pathway: not_defined # 1 536 1 536 536 1011 99.0 0 MYPDNNILTYLKWRGDVDFSTSPFNDIDALVLSIFSYLELPGIVKSNGTTISLEKAAKLY FADDHPRYDNLQYQELFKLMAHADRFKNAKLSYFISTLTEHTQFSAIKIELTDGTNFIAF RGTDDSLIGWKEDFEISFKITVAQQQAVKLLETILKADDQDYYLGGHSKGGNLAEYAAIN IEPKLRKRIKRIYTFDSPGIAEEIGAQLPNKYLQNTLRRFVPDFSVIGRLFESKNIPATI VDSTRKGLSQHDAFSWQIIGSNFDTRRHRNAQSQVYNQLINQWIGNATLEERESLTNDLF SALSSSGATKINELDKNGFGGFGAILFSLADSSRRTRFVFGSLFSSIWQTIKSQQLTKAL FSTDTIVGWVLVVLGIISLTLPQYAVRAFGALVAFTGIGFSVHQILTTAKSSLKDRQKNS FIISYLVVLALSTALISNNRLLIFLAHYFLGLFLIIYSYIRIRQLVFRKLPGIFQITIVA IEALIAFALGIIVVVNPSAFNRRAIIIIGILLIAYGFFKLVGELFGQRSKMPKNHR >gi|256541465|gb|ACPV01000009.1| GENE 32 33790 - 34056 419 88 aa, chain + ## HITS:1 COG:CAC2762_2 KEGG:ns NR:ns ## COG: CAC2762_2 COG3976 # Protein_GI_number: 15896018 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 3 88 47 132 132 67 43.0 5e-12 MLKEGTYSARARGMAGFVGVTLTVADNKISTVDLDLSTETPQYGQKAEKTLKQEILDKQS AHIDAVTGATFTSNGVKEATSEALKQAK >gi|256541465|gb|ACPV01000009.1| GENE 33 34213 - 34581 172 122 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00884 NR:ns ## KEGG: LCRIS_00884 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 122 50 171 171 172 99.0 4e-42 MVIAYLIMSQWDHVNLGNLFLLLAAFVVLSGVFVYWGMRLASKIFKFSTTTLTLVEYYIQ WSLIYVTVYQAIFSNIKHITSITNFIRVGNFLDPNLFVVAILPSFISVWIAVILYKKSIK AI >gi|256541465|gb|ACPV01000009.1| GENE 34 34607 - 35533 951 308 aa, chain - ## HITS:1 COG:SA2078 KEGG:ns NR:ns ## COG: SA2078 COG1957 # Protein_GI_number: 15927863 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Staphylococcus aureus N315 # 2 307 3 311 313 237 40.0 2e-62 MKQIYFNHDGNIDDLVSYLLLLQAPDIKLLGVGAIDADGYIDPSVEACRKMTDLFNLRGD DLTIARSNSRAVNQFPHEWRMATYSFNYLPMLNESGKIDTQQAKLPAHLDMVEKIKEADE PIALVMTGPLTDLARALDIDPDIEKNIEKLYWMGGSLDGHGNVAMVNADGSQEWNSFWDP YAVKRVFESNIPIQMVGLESTEELPLNDELRQHWASLRKYPAMDLIGQGYSLIVSIPSAE LYLWDVLTTISALYPEVVETETAKARVITDGLSAGSFVRDPKGREVTLVTKANKDLFFQK MDEILERK >gi|256541465|gb|ACPV01000009.1| GENE 35 35665 - 36321 561 218 aa, chain + ## HITS:1 COG:Cgl0917 KEGG:ns NR:ns ## COG: Cgl0917 COG4912 # Protein_GI_number: 19552167 # Func_class: L Replication, recombination and repair # Function: Predicted DNA alkylation repair enzyme # Organism: Corynebacterium glutamicum # 14 216 18 206 208 149 43.0 4e-36 MNIETLKKEFSARANEEKANHLVGYMRNQFLFYGLQTPEPRAIYHNFLKDEKKKKEVDWK LLDQAWDEEQRELQYFACDYLLAMKKYIVFDDLAKIERFVRTKQWWDTIDSLIKIYGYVG LTDNRVDDLMLKWSQDPDFWVRRVAIEHQLLRKKKMNTALLQKIIENNLDSQEFFINKAI GWALRDYSKTNPDWVRNFIELHREHLAKLSIKEGSKYL >gi|256541465|gb|ACPV01000009.1| GENE 36 36385 - 37833 1590 482 aa, chain - ## HITS:1 COG:L22116 KEGG:ns NR:ns ## COG: L22116 COG2723 # Protein_GI_number: 15672399 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 6 481 3 478 478 623 62.0 1e-178 MYSAKMPKNFLWGGAVAAHQLEGAWKEGGKGTSVADVMTVGSATKPREITDGVLEGKNYP NHSAIDFYHHYKEDIKLMAEMGFKAFRTSIAWTRIFPNGDEAEPNEEGLKFYDDLFDTCH EYGIEPVITLSHFEMPFNLAKNYGGFTNRKVIDFFVRFAEVCFKRYKNKVKYWMTFNEID NQSAFNNDFLMATNSGILFKDGMTDRDKEAAMYQAGHYELVASALAVKIGHKINPDFQIG CMINYSPVRPLTPSSDDVLLADKWEQRRDWFSDVHVFGEYPNAVESYIERNGYRPDITDE DKIVLKEGTVDYVGFSYYQTTTVSSEKVKPDELTDLAKAVAKNPTLKRSDWGWEIDPEGL RIALNQLQDRYHKPLFIVENGLGAYDKVETDGSIHDDYRIDYLRNHISEMEKAVELDGVN LMGYLPWGCIDLVSAGTGQMDKRYGFIYVDKNDAGEGTLARSRKDSFFWYKKVIESNGQD LD >gi|256541465|gb|ACPV01000009.1| GENE 37 37920 - 38624 505 234 aa, chain - ## HITS:1 COG:lin0901 KEGG:ns NR:ns ## COG: lin0901 COG2188 # Protein_GI_number: 16799974 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 225 1 225 237 154 38.0 1e-37 MSRYQDIANDIEKDIIEKKYTRKLPEQFELAQKYQTSRVTIVHALKILQNKKLIRTVKGH GTFITSKSIPDIFLNSDVNEHTGFTRHVNNALAITSNVIAFNIRKPSISERKALCLEKDD EVYDIIRQRILNKKPAKLEYTVMPVSRIPGITLDILHKSIYSYIQNDLGLKIGRADRIIT AEKSDAYDMKYLECKNDDPVLCIQQKAFLKDGRPFEISESRNRYDRGDLTVNGK >gi|256541465|gb|ACPV01000009.1| GENE 38 38990 - 39328 501 112 aa, chain + ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 4 110 2 101 101 93 55.0 1e-19 MAEQTIMLNCSAGMSTSLLVTKMQAAAKEQGIDAEIFACPASEADDKMAQQEIDCVLLGP QVSYMKGDFENKVKGKGKDGKDIPLDVINMQDYGMMNGANVLAQAEKLIKGE >gi|256541465|gb|ACPV01000009.1| GENE 39 39369 - 39740 527 123 aa, chain + ## HITS:1 COG:lin2833 KEGG:ns NR:ns ## COG: lin2833 COG1447 # Protein_GI_number: 16801893 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Listeria innocua # 20 110 8 98 100 87 58.0 5e-18 MAEEKKTPEQKEQETLMAAMGLIANGGNAKSLAFEAIRLAKKGNIAGAREKLKESDKSLL EAHNSQTGMLTKEAQGDHMHVTLLVVHSQDHLMNAITFRDLAGEMVDLYEKLYESGSLKK EDK Prediction of potential genes in microbial genomes Time: Wed May 25 05:07:12 2011 Seq name: gi|256541464|gb|ACPV01000010.1| Lactobacillus crispatus 125-2-CHN cont1.10, whole genome shotgun sequence Length of sequence - 9416 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 5, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 418 317 ## LCRIS_00892 hypothetical protein + Prom 489 - 548 8.8 2 2 Tu 1 . + CDS 590 - 1942 1508 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 1990 - 2038 3.2 - Term 1972 - 2033 4.7 3 3 Tu 1 . - CDS 2050 - 2460 532 ## LCRIS_00894 hypothetical protein - Prom 2490 - 2549 4.6 - Term 2504 - 2546 2.0 4 4 Op 1 3/0.000 - CDS 2563 - 4044 1649 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 5 4 Op 2 1/0.000 - CDS 4055 - 4777 569 ## COG2188 Transcriptional regulators - Prom 4802 - 4861 9.4 - Term 4829 - 4886 0.1 6 4 Op 3 8/0.000 - CDS 4927 - 6354 1749 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 7 4 Op 4 1/0.000 - CDS 6354 - 7736 1676 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase - Prom 7791 - 7850 12.7 8 4 Op 5 . - CDS 7920 - 8786 282 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 - Prom 8819 - 8878 7.3 + Prom 8763 - 8822 6.8 9 5 Tu 1 . + CDS 8905 - 9393 494 ## COG0778 Nitroreductase Predicted protein(s) >gi|256541464|gb|ACPV01000010.1| GENE 1 2 - 418 317 138 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00892 NR:ns ## KEGG: LCRIS_00892 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 138 38 175 175 243 99.0 2e-63 IRYIITIFFFTNLMWLIIDVNYHSVLGIIVSAIMTIYSGIASIEQLTKMHNRKREVPISR VYLEVQAALNLLFIILTFLPLGKYLFPFIENQSIMFFMTTLFLAGILLCVWSEYRIHQIM NDQDRYHKVIETFKKHQQ >gi|256541464|gb|ACPV01000010.1| GENE 2 590 - 1942 1508 450 aa, chain + ## HITS:1 COG:SP0310 KEGG:ns NR:ns ## COG: SP0310 COG1455 # Protein_GI_number: 15900243 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 7 445 9 447 448 371 45.0 1e-102 MADSKSGSFKDALAAKAGKFAGSRFVRAIMDAGYSVISFSIIGAVFLILNVLPQAFPIPG FAAFYANTLGRFSGLFQVVYNSTMGILALVFAGTFAYSYTDIYRREEKIDLVPMNGLMMF LMAFFITVPELIWKNGAVQFITTFTKTKMVAGGYEASTNGITRIAAVGIFTGLVIAWLTV QIYRYTVKHNWRIKMPASVPSGVSNSFSALIPGFCIAVVVALIELILVTLGTDIFQVLYI PFSFISAIADTWWGFLIIIFLIHFLWWFGIHGATIMSSFYTPIVLANMAANVNGANHFFA GDPMNSFVIIGGSGATLGMAIWLAFGSRSAQLKEIGKVELVPAIFNINEPLLFGLPIVYN INLLVPFICAPLASGLVGYIAVTSHLVPKIIVQQPWPTPVGLSGYLATTSWQGAVLSIIC ALVAFLVWFPFIKHYDNVLLKKEQADATKN >gi|256541464|gb|ACPV01000010.1| GENE 3 2050 - 2460 532 136 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00894 NR:ns ## KEGG: LCRIS_00894 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 136 1 136 136 247 100.0 8e-65 MITITKQFNFKAKDFFDYLEEQLIPAIKKARGNDMPVTLAKGTKYEVDGAQVELTDYERN KVYGAHFKTDRMELVIKYVTEDNDQGVKITFSEDMLSFDREKHGKLQTMFYNFQLKMGAK KELRRMGDNVLANIAA >gi|256541464|gb|ACPV01000010.1| GENE 4 2563 - 4044 1649 493 aa, chain - ## HITS:1 COG:CAC1405 KEGG:ns NR:ns ## COG: CAC1405 COG2723 # Protein_GI_number: 15894684 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Clostridium acetobutylicum # 1 493 1 473 473 505 51.0 1e-142 MAFSKNFTWGGATAANQYEGGYDEGGKGLNAVDVLTNGSATEPRKVTWKKPNGETGATPL VWGQEFSLPEGAVPTILDGYYYPSHQGTDFYHHYQEDIKLMADMGFDVFRLSMNWSRILP NGDDEQPNEDGLAFYNKVFDECAKYGIEPLVTLSHYETPLSLITHYGGWKDRHLIDAFVH YSDIVMKHYKGKVRYWLTFNEINAMDMAPYMGGGLIDGSEQNRAQGAHNQFVASAKVVKL AHEIDPNNRVGQMLAYSAYYPYTCDPADQLKVMEAKQEMLFYSDVQTGGRYPNYRLKKYE RDGIKLNDTPEDYELIAKYPADFLSFSCYTSNVLTTHEADAKANGNVSAGGVVNPYLESN AWGWATDPDVLRIGLNELWDRYHKPLWVVENGLGSADTLEKDGSIHDNYRIDYLRDQIKS MRDAVTIDGVDLMGYTTWSAIDLVSNGTGEMKKRYGFVYIDRDDRGNGSLKRYPKDSFYW YKKVITSNGEDLD >gi|256541464|gb|ACPV01000010.1| GENE 5 4055 - 4777 569 240 aa, chain - ## HITS:1 COG:lin0901 KEGG:ns NR:ns ## COG: lin0901 COG2188 # Protein_GI_number: 16799974 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 5 237 3 234 237 223 45.0 2e-58 MAKAKYLEVASELKKRIENGVYSKQEPLPDQEAFAKEFDVSRLTVKKAFDGLERQGLVYK QSGLGTFVAGEVPIKSDIDSPVNAFTGLRNLLGKNEVTSKVLHFSVEFPDEQIQKNLDLK RNEPVYNIVRLRIYDDQPYIIEHTYMPIKLVPELDEKILHASIYNYIHQKLHLKFGHAYR KIRAAKPNEYDKKFLDAKDDDPMLELEQIIWLTNGQPIEYSTSRNRYDTRDYVLLDNNRF >gi|256541464|gb|ACPV01000010.1| GENE 6 4927 - 6354 1749 475 aa, chain - ## HITS:1 COG:L31294 KEGG:ns NR:ns ## COG: L31294 COG1455 # Protein_GI_number: 15672800 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Lactococcus lactis # 12 472 4 469 472 484 58.0 1e-136 MADQKQSGFGLWVNQHIMPPIMKFVNTKAITALQNGMVYSLPFIIIGSIFLILGNIPIKS VADAINASGWGAIFAQANNTTFQMMGLWAAIGIAYVYVKNENYEPLAPGLTSAAAFLMLQ NLSIDNPLKAALTSGLTDGSMTGKVVTENIDKLPHALQSFLESPVTGVINTKWLGGDGMI AAIIVGLLVGWIYTMIMKAGWTIKMPAQVPPAVSNQFTAMIPSGVILTGSMLIYAAFNAF AHTDFLNWIYNTLQIPLQGISDSFGGAIAIGFLVPFFWFFGVHGGLIMGSLVAPMLQANT ADNARLFAEGKLTIAQGAHVVTNEFYNNFINLTGSGITIGLIIFTLVAAKSVQLKSIGKL ELVPGIFNINEPFLFGLPIVMNPMLAVPFFLTPLVVAASTYLVIKTGIVPPLNGVAAPWT TPAVISGFLIGGWKMAIWQACTLLISTAIYWPFARKYDKVLLAKEMKEAKQEANK >gi|256541464|gb|ACPV01000010.1| GENE 7 6354 - 7736 1676 460 aa, chain - ## HITS:1 COG:L32812 KEGG:ns NR:ns ## COG: L32812 COG2723 # Protein_GI_number: 15672801 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 4 460 2 452 453 537 56.0 1e-152 MSEKRKLPSTFFWGNSVSSMQTEGAWNEDGKGLSVYDVRPATDKTTDWHVAIDEYHRYDE DLDLMKDMHLNMYRIQISWSRVCPDGDGDFNEKGIDFYDRLINAMLKRGIEPMICLYHFD MPLNLAKKYNGFMSRHVVDAFVRFGKKMIDHFGDRVKYWIVFNEHNLYFQDEVFNISGYE HGEKSLDDMYTIFHHTMMCHIQLANYIHENYSDVKIGGMLAYQQIYPATSKPKDIWSAKQ VQEFLNFNIYDADTGRGYSPEVMQYAKNHHINMDITDEDKEIMKKAKADFLAFSYYSSWV LSSDKIPAGEAPNRYLNQGGVEAKYVKTNDWGWAIDPLGFRNAITTMYNYYRIPIFPIEN GIGLKETWDGKNMIEDDERIAYHRDHIKAMKDAIFDDGAKVLGYLGWGLIDIPSSHADME KRYGAIYVNRSNHDLKDLKRVPKKSFYWFQKVLSDNGDEL >gi|256541464|gb|ACPV01000010.1| GENE 8 7920 - 8786 282 288 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 4 285 6 316 323 113 28 6e-25 MNLAAIDIGGTTIKLATWKDGKLQNNHAVDTPKDLNGFYDVLTAEINKIKQDTKIEGVAI SSPGAVDQKTGIIGGSSALPYIHNFKIVDELEKRFELPVSIENDANSAALGELAAGAGKG CNSMVFFVIGTGIGGALIINQKVWHGAHLFGGEFGYMLMGTHTLSELASPVTMANHYNER TGKNLDGKTVFALADQDDPVASDVRSTLIHSLAVAIYNIQHSFDPEKIVLGGGISNNPEL IPLLNKEIDQIEANSDLHTLKPVIALCSLKSDANLRGAVANFEQKHQN >gi|256541464|gb|ACPV01000010.1| GENE 9 8905 - 9393 494 162 aa, chain + ## HITS:1 COG:MA1774 KEGG:ns NR:ns ## COG: MA1774 COG0778 # Protein_GI_number: 20090624 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Methanosarcina acetivorans str.C2A # 3 141 32 195 220 67 31.0 2e-11 MVNSIFTNRRAVRNFSSESISDDEIKSLIAAFQTTPCGMHQTDVMSLVVVKDEALRDKIE TKTDNACYHAPVLFIINTKKDSMFGERDASCGAENIMLEATDLGLGSVYVMGGAARLNDD SELQKELGIDPAFQTSVIVPVGKIGEKPEATDRSNRYQVTIY Prediction of potential genes in microbial genomes Time: Wed May 25 05:07:20 2011 Seq name: gi|256541463|gb|ACPV01000011.1| Lactobacillus crispatus 125-2-CHN cont1.11, whole genome shotgun sequence Length of sequence - 4935 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 5, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 2 - 61 6.3 1 1 Tu 1 . + CDS 81 - 740 611 ## LCRIS_00902 hypothetical protein + Term 757 - 809 9.4 - Term 744 - 795 10.8 2 2 Tu 1 . - CDS 820 - 2106 1923 ## COG0148 Enolase - Prom 2175 - 2234 8.7 + Prom 2242 - 2301 6.2 3 3 Tu 1 . + CDS 2321 - 3154 688 ## COG1307 Uncharacterized protein conserved in bacteria + Term 3164 - 3197 1.0 - Term 3150 - 3184 2.0 4 4 Tu 1 . - CDS 3188 - 3763 368 ## COG0671 Membrane-associated phospholipid phosphatase - Prom 3795 - 3854 7.7 - Term 3808 - 3858 9.4 5 5 Tu 1 . - CDS 3867 - 4844 1258 ## COG3049 Penicillin V acylase and related amidases Predicted protein(s) >gi|256541463|gb|ACPV01000011.1| GENE 1 81 - 740 611 219 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00902 NR:ns ## KEGG: LCRIS_00902 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 5 219 1 215 215 296 98.0 3e-79 MELFMNRKIFVGIAAVTLAVTLTGCSQVHFGKDAVTIGEVKQNKKTVNVKKAKSAKVQSS SSKKIKPKKDSKKKIKENKKNRTKKSAVVIWNTAKTAKLKTAVNNWGKKSGQTYQFYDGK KNLKTKKGATYPGVLATNRFVLNKKSIKIGYSPTGKAKYDYNVLAIANDDFKSWHNTYLF CLKSDKPVILLDQSRNGNPIVVKVVKDTSLNKIFSQLVK >gi|256541463|gb|ACPV01000011.1| GENE 2 820 - 2106 1923 428 aa, chain - ## HITS:1 COG:L0008 KEGG:ns NR:ns ## COG: L0008 COG0148 # Protein_GI_number: 15672258 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Lactococcus lactis # 6 422 5 421 422 521 63.0 1e-147 MLKSVIENVHALEIFDSRGNPTVEVHVTLSNGVVGKAEVPSGASTGENEAVELRDGGSRL GGKGVSKAVNNVNTEINDALKGMDPYNQPKIDKTMIDLDGTPNKGRLGANAILGVSMAVA VAAANDAHLPLYRYLGGTDLEMPQTFHNVINGGEHADNGIDIQEFMITPVAKTSFRDGFE KIVNVYHTLKKVLEDMGYETGLGDEGGFAPNMKNSEEALKALHESIIKAGYKPGEDIAIA CDCAASYFYNKDDHKYHLEGKVLTDEELADYYDKLLDEFPELISMEDPYDENDVEGMVKF TKSHKDRIQIVLDDFICTNPALLTKAIKEGAGNASLIKLNQIGTVTETLETIRLSRKNGY NTMISHRSGETGDTFIADLAVAVNGGQLKTGAPARSERVEKYNRLLEIEEELGDGERLAF FPDDVDHD >gi|256541463|gb|ACPV01000011.1| GENE 3 2321 - 3154 688 277 aa, chain + ## HITS:1 COG:SPy1698 KEGG:ns NR:ns ## COG: SPy1698 COG1307 # Protein_GI_number: 15675555 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 5 275 4 278 280 190 37.0 3e-48 MENIKLIVDSSANMNNDPARNLEVVPLTISFGGKDYLDNQDLNMKEFLSNMNQNNVAGQT TCPSIQAWLDALEGTEKAIIVTMTSGMSGTFSSALQAKAMYEEKHPLSKIIVVDSRSAGP ELAIIVHGIEKMLQGEMRFVDLEEAIAKFRMQTHLLFVLQSLHNLSLNGRVSPAVAKIAG LLKINLIGTASKEGKLEPLTKARGMKKAIREIIKYMKEDNYHGGEVIIDHCENEKDAATI KEKILAEYPDAQITIRPMHGLCSFYAEEGGIMVGFHE >gi|256541463|gb|ACPV01000011.1| GENE 4 3188 - 3763 368 191 aa, chain - ## HITS:1 COG:SA0415 KEGG:ns NR:ns ## COG: SA0415 COG0671 # Protein_GI_number: 15926134 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Staphylococcus aureus N315 # 35 179 56 204 224 65 34.0 4e-11 MNNYFVLLLSAVILLWLIFNIKNSRRFNLFDHWLHHQLVKRHDGYSWQVIAFINDPKLMV VWDVLLAGLLLNEERNLTALWVLGTLGFADISGIILKKLIRRQRPLMHSDKEDGYSFPSG HVLGATTMGLIVLQLFAKDLGTGFVIVVVALWAMVIFSRLSLKAHYPSDVLGATSLAIVC FSISQQLFLAI >gi|256541463|gb|ACPV01000011.1| GENE 5 3867 - 4844 1258 325 aa, chain - ## HITS:1 COG:BS_yxeI KEGG:ns NR:ns ## COG: BS_yxeI COG3049 # Protein_GI_number: 16081005 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Penicillin V acylase and related amidases # Organism: Bacillus subtilis # 1 306 1 309 328 169 31.0 5e-42 MCTSIIFSPQDHYFGRNLDLEVTFGQQVVVTPRNYVFNFRKMPEMKQHYAMVGIALDAGD YPLYFDAANEKGLGMAGLNYPDNATYYDVVDGKDNIASFEFIPWILGQCETVADAKKLLE KINIVDINFSDKMQASPLHWLIADKTGVSIVVETDKDGMHVYDNPVGCLTNNPQFSSQLF NLNNYADVSPAMPKNNFSSKVAMNGYSRGLGSRNLPGGMDSESRFVRVAFNKFNAPVGKT EEENVDNYFHILHSVEQQKGLDQVGPDAFEYTIYSDGTNLDKGIFYYTTYTNKQINVVDM NKEDLDSAKLITYDMLTKPTFNHQN Prediction of potential genes in microbial genomes Time: Wed May 25 05:07:25 2011 Seq name: gi|256541462|gb|ACPV01000012.1| Lactobacillus crispatus 125-2-CHN cont1.12, whole genome shotgun sequence Length of sequence - 5193 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 3, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 57 - 145 66.9 # Ser CGA 0 0 + Prom 59 - 118 80.3 1 1 Tu 1 . + CDS 308 - 1354 996 ## COG2855 Predicted membrane protein + Term 1364 - 1417 3.7 - Term 1359 - 1397 1.5 2 2 Op 1 . - CDS 1407 - 1625 288 ## FI9785_1084 hypothetical protein 3 2 Op 2 . - CDS 1579 - 1866 274 ## LJ1123 hypothetical protein - Prom 2059 - 2118 8.6 + Prom 1937 - 1996 6.3 4 3 Op 1 15/0.000 + CDS 2038 - 3939 1692 ## COG2217 Cation transport ATPase 5 3 Op 2 . + CDS 3965 - 4195 320 ## COG2608 Copper chaperone 6 3 Op 3 . + CDS 4195 - 4740 631 ## FI9785_1475 hypothetical protein 7 3 Op 4 . + CDS 4758 - 5193 216 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Predicted protein(s) >gi|256541462|gb|ACPV01000012.1| GENE 1 308 - 1354 996 348 aa, chain + ## HITS:1 COG:lin2251 KEGG:ns NR:ns ## COG: lin2251 COG2855 # Protein_GI_number: 16801315 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 9 347 5 331 335 201 37.0 3e-51 MEGFLLTNIIKTKSFWLAAGMTLFCSVAGIFLAKLPYVNLIGALVIALLLGIALQVTPQS VQTEAKSGMGFISNKFLRLGIILLGFRLNLTKLADAGVKTILVAAFAVSGTIVLTYWLSR KFGAEDELAILSACGCGVCGAAAVMGVSPQIETTDEERKRENEVLAVAVVCVMGTMFTLL EIMLKPLLGLTDTQYGVVAGGSLHEIAHAVAAGSAFGEISLDSSLIMKLSRVLLLAPVAL IVGYWYQKRLVTESEAEHTKAPKKLPIPWFLGGFILTSIIGTFLPLSAQTLDLLVQAAYV FLGMAMAALGISVNFKVIFKRGGAVFGAAAISSTCLLVFMIIMSKIFF >gi|256541462|gb|ACPV01000012.1| GENE 2 1407 - 1625 288 72 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1084 NR:ns ## KEGG: FI9785_1084 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 72 81 152 152 118 76.0 5e-26 MDYCGFSIRGTIKNVDHLYLDEIFAKNPYLNEIYADDLEGAKKDLRVLEITPITAGYLDY RTKPVFMRNFKF >gi|256541462|gb|ACPV01000012.1| GENE 3 1579 - 1866 274 95 aa, chain - ## HITS:1 COG:no KEGG:LJ1123 NR:ns ## KEGG: LJ1123 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 77 1 77 152 125 74.0 5e-28 MVDILTKQTTNQEFLDFAVEQVHNADIVTTHAGEPSAQVCDLLLNKNGKLYIATSSQNPF FKDLIAQPKVIVDGYKGGRNDGLLRFFNSWYNQKC >gi|256541462|gb|ACPV01000012.1| GENE 4 2038 - 3939 1692 633 aa, chain + ## HITS:1 COG:L63697 KEGG:ns NR:ns ## COG: L63697 COG2217 # Protein_GI_number: 15673984 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 2 617 1 616 625 510 48.0 1e-144 MIKVQRFFIKYKKQILLLNTILLLLAEGSKWLLHLNLPYQLLMLVVGIIGVIPIVLTAIS SIKVKLISIDVLVSLAVLGAFIIGEFNEAAIVTWLFMLGDFLEEVTLKKTRSAISDLTKM APTTALVMQDDGSTKEEDVDFIDPGTRILVKTGDQIPVDGKIVSGSGYLNEASINGESSL ANKKIGNQVYAGTILEDGTLTIETIAAGEDTTFGKIIEMVEEAQDTKSHAEKLINRFSKY YTPAVLVIAIIVGLITRDLKLAITVMVLGCPGALIIGVPVSTVAGIGNGAKNGIIFKGSQ VMDQTRKIDEIAFDKTGTLTVGHPEVSAIKILKGQRNEIIRLAAQIEQQSNHPLAQAIAK LDNQASDVIKVETVKGKGLIATISGEKYYLGNQNLITENTHLNQELLHTINHLSNLGNSI VVFANADQSQLAVFGIKDQLRPEAKIALTRLKKLGVKKLVMLSGDNFKTAKQVAAELPID EVYGEMLPADKAAFVKKEQEKGYHVAFIGDGINDSPALANADVAIAIGSGTDVAIDVSDI VLVKNDLRKVSYAIDLAKKTVLNMNENIAIALLTVLLLFIGLFAGYVEMASGMFIHEFSI LVVILNGMRLIRFKQKLDHHQVSKKQIDVALNM >gi|256541462|gb|ACPV01000012.1| GENE 5 3965 - 4195 320 76 aa, chain + ## HITS:1 COG:L134080 KEGG:ns NR:ns ## COG: L134080 COG2608 # Protein_GI_number: 15674047 # Func_class: P Inorganic ion transport and metabolism # Function: Copper chaperone # Organism: Lactococcus lactis # 1 75 1 75 75 60 42.0 9e-10 MEKVMMKLAGMTCPSCLTKIEKAVDNLDGTDQIKVMFNAGKLKFTMDPDKVKAVDVKAAI EKMGYEVQGIKEKELN >gi|256541462|gb|ACPV01000012.1| GENE 6 4195 - 4740 631 181 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1475 NR:ns ## KEGG: FI9785_1475 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 181 1 181 181 275 81.0 8e-73 MNAQEKYQAELKQSDLDHHQPTAAAMTGHIISNLLVHSLKISQASLFAQGSASLFLADKA TEWLNYEHEEFKRLNHLLVNNGESIPTTSKQFQEYTMLEEDGSSKYLAGEQQLFNLVKDF DTQILFITKAITLANDENWPELAANLIDLLAWIKEQIRVSQSFLGHDLKEGLYTEEDDDD F >gi|256541462|gb|ACPV01000012.1| GENE 7 4758 - 5193 216 145 aa, chain + ## HITS:1 COG:L0239 KEGG:ns NR:ns ## COG: L0239 COG0664 # Protein_GI_number: 15673985 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Lactococcus lactis # 5 143 8 146 222 92 41.0 2e-19 MADLCVDLVPLFTALPQDEKIKLERLVQHQNYQKGEIVIDPTVSANLVIVAHGSTKLYTL DETGHEDVLQVLHTGDYVGEDWLFGQVNTHSYVEATDNSEICLLRRQDFLKLIHQQPELS IRLLELSMTKISAMQKQIQLLTLPK Prediction of potential genes in microbial genomes Time: Wed May 25 05:07:32 2011 Seq name: gi|256541461|gb|ACPV01000013.1| Lactobacillus crispatus 125-2-CHN cont1.13, whole genome shotgun sequence Length of sequence - 2897 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 25 - 189 75 ## LBA0544 transcriptional regulator 2 1 Op 2 . + CDS 204 - 1136 743 ## COG2378 Predicted transcriptional regulator 3 1 Op 3 . + CDS 1204 - 1587 654 ## LGAS_0977 FMN-binding protein + Term 1687 - 1730 1.6 + Prom 1798 - 1857 7.2 4 2 Tu 1 . + CDS 1894 - 2361 445 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) + Term 2371 - 2411 4.5 Predicted protein(s) >gi|256541461|gb|ACPV01000013.1| GENE 1 25 - 189 75 54 aa, chain + ## HITS:1 COG:no KEGG:LBA0544 NR:ns ## KEGG: LBA0544 # Name: not_defined # Def: transcriptional regulator # Organism: L.acidophilus # Pathway: not_defined # 2 53 157 208 211 82 78.0 5e-15 MYANEIGQNSFVLPLKLKDLALYLGTTPETLSRKFALLEEQGRLRRKLRQIDLI >gi|256541461|gb|ACPV01000013.1| GENE 2 204 - 1136 743 310 aa, chain + ## HITS:1 COG:BH1889 KEGG:ns NR:ns ## COG: BH1889 COG2378 # Protein_GI_number: 15614452 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus halodurans # 1 310 1 313 325 136 28.0 5e-32 MKKSERLNQELIYLSDKKVFHLKELEEHFAISERTALRDIADLEQLGLAFYTESGRNGGY HLTNSKLLLPIRFNTQEINAIFFALQAIRGISETPYSNAYDEIELKLVKSLPQNLQEQVK LQKQLVHFYSQPSLNEVKFFATLLKACIDNSLIEVENFQFVQGKQKLQLLDIFFQAGNWF CHAYNLDLKKWYVLRLDKFEAVRVLPTETKIMNKEPLTANLQKYEENYYQVPYSCLLTEN GEQKVKYNSYPIMNIVHDAGKIYLQGKYNREELHYLVDYLISLGSDVQVLQPSELKKNYL TKLKQIMKKY >gi|256541461|gb|ACPV01000013.1| GENE 3 1204 - 1587 654 127 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0977 NR:ns ## KEGG: LGAS_0977 # Name: not_defined # Def: FMN-binding protein # Organism: L.gasseri # Pathway: not_defined # 3 127 4 128 128 212 81.0 3e-54 MAIMTEEFLDVLRDKGLATIVSINGKPASVVNTWSQYINVVADDTILIPAAGMHSIQNDL KADPEHALTIAVGSYNYPGTTGMGRGYHIHGSGKFITEGTYFDQMKAQFEWIRAVLVVKI SDIEQKI >gi|256541461|gb|ACPV01000013.1| GENE 4 1894 - 2361 445 155 aa, chain + ## HITS:1 COG:SPy1531 KEGG:ns NR:ns ## COG: SPy1531 COG0783 # Protein_GI_number: 15675430 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Streptococcus pyogenes M1 GAS # 2 153 24 175 175 151 46.0 5e-37 MKYPKTKEILNQAVADTTQLMMVVRQQHWYMRGPEFLKLHPYLDKVMDELDEQRDLISER LITIDGSPYSSLQEVLDHTKIEAHPGEWGISTRERFATIIAGYRYLEHLYEEGIKVSDEE GDYGSNDILTSCHTDIEKRIWMMQAQIGEAPKIDR Prediction of potential genes in microbial genomes Time: Wed May 25 05:07:38 2011 Seq name: gi|256541460|gb|ACPV01000014.1| Lactobacillus crispatus 125-2-CHN cont1.14, whole genome shotgun sequence Length of sequence - 3966 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 56 - 907 452 ## LCRIS_00921 hypothetical protein + Prom 945 - 1004 6.0 2 2 Op 1 . + CDS 1048 - 2355 688 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 3 2 Op 2 . + CDS 2355 - 3452 748 ## LCRIS_00923 endoglucanase + Term 3485 - 3527 3.2 Predicted protein(s) >gi|256541460|gb|ACPV01000014.1| GENE 1 56 - 907 452 283 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00921 NR:ns ## KEGG: LCRIS_00921 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 283 1 283 283 533 99.0 1e-150 MTRKYFKLAGLAYLASVTFPILLLWLARLYPANVFNGLVMILILAILTGLIFSRVDVTWL ILILTTIGAGFLLLGYVVMPVKEKFLLLIAYPIEASLVTVIRQHIIRWSFFTNRNDEIRH YNSLYDRRLKLRTFDSAEKFYQNELHKIEQHPELDLWSNVQIVSWDQHKQYAEAHPNSHD RILKQITKVLKNNRLKGEFIYFMGDATFLIISPEIPNELVKKVNHIVDTKLSELELPIPV SLKHASVHINVDNSDRFPDLIAVIRFLRRELETEIVTEYIKER >gi|256541460|gb|ACPV01000014.1| GENE 2 1048 - 2355 688 435 aa, chain + ## HITS:1 COG:lin0533 KEGG:ns NR:ns ## COG: lin0533 COG1215 # Protein_GI_number: 16799608 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Listeria innocua # 7 433 9 416 416 236 34.0 9e-62 MTEGFQILTLISIWLSILFSLVTLWGGVLFWLKHSKEIAKITPLEYYPTVSIVVPAHNEE AVIQKTSKAILNLNYPEDKVEILIFADNCTDRTAELAEAIGNRTEYQKRQFKVIRRTGEG GKSGVLNDALKMIHGDYLCVYDADAMPEENALYFLIKKVLEDPERYVASFGRNKTRNAKQ NFLTSCINLEIVVTHRIQHCGVWQLFKIGRIPGTNFVIKTAFLKELGGFRSGALTEDTDL SFTILGTGKLIALAHNSEAFQQEPEKLKDYYYQRLRWAKGNYEVVINNFRHLFDHSNWRV KLETFYMSSIFFWFNAAVVLSDIFFIVNLIFAVIKIWVPTVEMPFTFTAGNLLLSQVLLF NWLLMILLYVLQISVAASTQFGQVTTRQLWLAVASYFTYSQLFIIISINAVWSAIADRLF HREATKWVKTKRFTD >gi|256541460|gb|ACPV01000014.1| GENE 3 2355 - 3452 748 365 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00923 NR:ns ## KEGG: LCRIS_00923 # Name: not_defined # Def: endoglucanase # Organism: L.crispatus # Pathway: not_defined # 1 365 1 365 365 693 97.0 0 MLKNKNRITPILILLTIGLFIAIMFYVRGSNNRTLHRNLYRQWKEDYVVEESDGKTWIKA APRTSLSEGQGYGMLISAMAGEKGWAKKEDFQRLYRFYLANRLTIDDQQTELMSWKQVDK KVYSTNATDGDLYIAESLIKAGKLWNEPKYLQQAKLLLADILRYDYNSTTQTLTVGDWAN KKSKYYYLMRTSDVLPTYFDDFYQLTGNSQWLTIKKVMLTKLYQLSKQHSSGLVPDFAWI SKKGVRPAKANEVAGKNDGDYSGNACRVPLFLATSKDARAKKIITKMLRFFSKQKQVTAG YQLNGKALNNYASPSISAPIFFAVQQLKKPEFDNLFVSQQYVFTNRLTDTNYYDAALITL VAMME Prediction of potential genes in microbial genomes Time: Wed May 25 05:07:48 2011 Seq name: gi|256541459|gb|ACPV01000015.1| Lactobacillus crispatus 125-2-CHN cont1.15, whole genome shotgun sequence Length of sequence - 5676 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 3, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 864 - 923 3.2 1 1 Tu 1 . + CDS 956 - 1138 200 ## gi|227877503|ref|ZP_03995568.1| conserved hypothetical protein + Prom 1140 - 1199 4.5 2 2 Tu 1 . + CDS 1264 - 1761 317 ## LCRIS_00926 RNA-directed DNA polymerase + Term 1806 - 1848 -0.8 - Term 1695 - 1735 6.2 3 3 Op 1 18/0.000 - CDS 1839 - 2303 509 ## COG0054 Riboflavin synthase beta-chain 4 3 Op 2 15/0.000 - CDS 2318 - 3496 1146 ## COG0807 GTP cyclohydrolase II 5 3 Op 3 16/0.000 - CDS 3498 - 4094 720 ## COG0307 Riboflavin synthase alpha chain 6 3 Op 4 . - CDS 4087 - 5148 802 ## COG0117 Pyrimidine deaminase - Prom 5180 - 5239 4.9 Predicted protein(s) >gi|256541459|gb|ACPV01000015.1| GENE 1 956 - 1138 200 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877503|ref|ZP_03995568.1| ## NR: gi|227877503|ref|ZP_03995568.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 60 1 60 60 99 100.0 7e-20 MKLIEQILSQSNLKEAIHRVKINKGAPGVDKRMVEELDSYFRKHQAEIKYAIMKMMDING >gi|256541459|gb|ACPV01000015.1| GENE 2 1264 - 1761 317 165 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00926 NR:ns ## KEGG: LCRIS_00926 # Name: not_defined # Def: RNA-directed DNA polymerase # Organism: L.crispatus # Pathway: not_defined # 1 165 101 265 265 339 100.0 2e-92 MEDGLVKPNKIGVPQGGPLSPILSKLYNKIRELLCRRKAAAQPLSLVFTKVNQVVRGWIN YFKIGGMKYFLFKFSQWLRHKIRVVIIKQWKLPRRIYTNLMRINKALKCNFSDEDIHKVA NTRLGWYKRSTGHVVNFLLSPKVLGISKADRPGLVDPLEYYLSRR >gi|256541459|gb|ACPV01000015.1| GENE 3 1839 - 2303 509 154 aa, chain - ## HITS:1 COG:SP0175 KEGG:ns NR:ns ## COG: SP0175 COG0054 # Protein_GI_number: 15900112 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Streptococcus pneumoniae TIGR4 # 1 149 1 149 155 150 48.0 1e-36 MNIYEGNFKNNNYHIAIVASKFNEIVTHHLVDGAIASLKQFGVLEDQIDIYWVPGAFEIG FTANKLLNSNNYDGIMTLGAVIKGETDHYSMIIQNVTNAIMQMNLKAEVPITFGILTTEN IDQALQRSGLKAGNEGSSTAQSLLEMISLNKQIK >gi|256541459|gb|ACPV01000015.1| GENE 4 2318 - 3496 1146 392 aa, chain - ## HITS:1 COG:BS_ribA_2 KEGG:ns NR:ns ## COG: BS_ribA_2 COG0807 # Protein_GI_number: 16079383 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase II # Organism: Bacillus subtilis # 204 389 5 196 198 226 57.0 4e-59 MDVKKIQNAIQWMKNGGLVIVADDEDRESEGDMIGLGSKVTPENVNFMTKHARGLLCTPV SKTIAQRLNFYQMEQNNTDPYGTAFTISVDYKTTTTGISAYDRAATIKAIADPTSKPEDF FRPGHCFPLVAKDDQIKNRNGHTEASIALAHLAGEPEVAYICEVMKADGHMARRPQLKEI AKEYHLPFLTIAELQEYINSPVSKRSEFVNLPTKYGNFKIKAFANENLAIIKGKIDPKKP VLVRLHSECLTGDTFGSMRCDCGDQLHTAMKQINKNGSGIILYLRQEGRGIGLINKLKAY GLQDQGYDTYEANEILGFKPDERNYIIAAKILKDLGISHINLLTNNPDKIDQLENNGITI EKRIPLEIPANEVNHDYLETKRDKFHHLLGAL >gi|256541459|gb|ACPV01000015.1| GENE 5 3498 - 4094 720 198 aa, chain - ## HITS:1 COG:BH1555 KEGG:ns NR:ns ## COG: BH1555 COG0307 # Protein_GI_number: 15614118 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase alpha chain # Organism: Bacillus halodurans # 1 196 1 195 215 145 36.0 4e-35 MFSGLVRGDARIAAIDKNDETIVMTVACQPDFTKNLQIGDSIAVNGTCLTVEQYTDTSFV VTMMPQTYQKTTFKNLDINAQLNVERSLQVGQRLEGHLVTGHIDDIAKVTEIRTNENAIE VWFAFPTRLKNQIVAQGSIAINGVSLTVMDTHDNVFSVGLIPHTQDETNLSKLNVGSEVN IETDILSKYVAKNLEKRI >gi|256541459|gb|ACPV01000015.1| GENE 6 4087 - 5148 802 353 aa, chain - ## HITS:1 COG:BS_ribG_1 KEGG:ns NR:ns ## COG: BS_ribG_1 COG0117 # Protein_GI_number: 16079385 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine deaminase # Organism: Bacillus subtilis # 5 144 2 140 142 149 50.0 6e-36 MENSDEAYMQLAIQEAKKGLYQTWKNPMVGAVIVKDGNILATGHHIRYGYYHAERDAISK LTPEQLFNSTLYVTLEPCSHYGKQPPCSDLIVSSKIKRVVIAQVDPHQLVTGKGIAKLRQ HNIQVTVGVLEDQAKKLNKFYTYFYQHNHPWITLKQAVSLDYRINEAKNIRTQITNETVY QRVHRERANYQAIMIGSNTAIIDNPSLLTTVTTDFPPIRIIVDRRGRLLNHLNIKLLTDK LSPTWIFTQNTSLAKTPHNENISIFLMKNASITEVIKKLTNEEIQSVYVEGGPTLANALL AEGQVNNLITYISPILLGQKGKLGISPSSKTTLHNLRAEKLDDNFRIEGEINV Prediction of potential genes in microbial genomes Time: Wed May 25 05:07:56 2011 Seq name: gi|256541458|gb|ACPV01000016.1| Lactobacillus crispatus 125-2-CHN cont1.16, whole genome shotgun sequence Length of sequence - 1642 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 70 - 381 233 ## FI9785_169 putative transposase + Prom 387 - 446 6.1 2 2 Tu 1 . + CDS 546 - 1223 775 ## COG3212 Predicted membrane protein + Term 1234 - 1272 7.0 + Prom 1253 - 1312 6.0 3 3 Tu 1 . + CDS 1383 - 1641 387 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases Predicted protein(s) >gi|256541458|gb|ACPV01000016.1| GENE 1 70 - 381 233 103 aa, chain + ## HITS:1 COG:no KEGG:FI9785_169 NR:ns ## KEGG: FI9785_169 # Name: not_defined # Def: putative transposase # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 103 183 285 285 201 96.0 8e-51 MINAHPANHYLLGDEGYLSKNLATNLKHMGYVLWTPYRKNMQGARRHNDHQLMAIRRSIE SDFSLLSYYNAENNRARSPVGFQQRLEIAILAYNMAYCLERFN >gi|256541458|gb|ACPV01000016.1| GENE 2 546 - 1223 775 225 aa, chain + ## HITS:1 COG:lin0040 KEGG:ns NR:ns ## COG: lin0040 COG3212 # Protein_GI_number: 16799119 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 58 198 57 203 203 64 29.0 2e-10 MKKFNIKKVSLAAAALGLAAGGASLLAINQANASTGTQTQQSQSNNTEQNQSNTGTASIN LSQEDAVNKFYEKYGSKSIKEIELEQKKNSYVYEIEGFDSQNEYKVKIDASNGNILKAES EKLDSDDEAQALDLNNMMTREQATQLAQTQVSGQPVEWSLEMDDDQPIWKVEFEDGGKKT EVEIDAKNQKIIKTETEDDEKDHDKDYEKEKMTVKSTKILMKINK >gi|256541458|gb|ACPV01000016.1| GENE 3 1383 - 1641 387 86 aa, chain + ## HITS:1 COG:L190278 KEGG:ns NR:ns ## COG: L190278 COG1063 # Protein_GI_number: 15673531 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Lactococcus lactis # 1 86 1 85 348 107 58.0 5e-24 MKAAVFVEPGKVEVREVPKPKIDGENQAIIRVIRASVCGSDLWWFRGIADRESGSLIGHE AIGVVEEVSDEVTNIKPNDFVLVPFT Prediction of potential genes in microbial genomes Time: Wed May 25 05:08:04 2011 Seq name: gi|256541457|gb|ACPV01000017.1| Lactobacillus crispatus 125-2-CHN cont1.17, whole genome shotgun sequence Length of sequence - 14988 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 6, operones - 2 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 789 926 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases + Term 816 - 849 1.3 + Prom 811 - 870 6.9 2 2 Tu 1 . + CDS 896 - 2152 882 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen + Term 2170 - 2216 3.8 - Term 2166 - 2197 -0.7 3 3 Tu 1 . - CDS 2204 - 2905 469 ## COG2186 Transcriptional regulators - Prom 2998 - 3057 7.0 + Prom 2943 - 3002 8.2 4 4 Op 1 . + CDS 3049 - 4578 1493 ## COG1233 Phytoene dehydrogenase and related proteins 5 4 Op 2 . + CDS 4571 - 5266 680 ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 6 5 Tu 1 . - CDS 5407 - 6645 1006 ## COG3547 Transposase and inactivated derivatives + Prom 6959 - 7018 8.1 7 6 Op 1 . + CDS 7094 - 7531 460 ## CLL_A0661 putative oxidoreductase + Prom 7536 - 7595 5.0 8 6 Op 2 41/0.000 + CDS 7631 - 8425 991 ## COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component 9 6 Op 3 24/0.000 + CDS 8443 - 9651 1029 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 10 6 Op 4 19/0.000 + CDS 9632 - 10870 1296 ## COG0520 Selenocysteine lyase 11 6 Op 5 6/0.000 + CDS 10806 - 11318 306 ## COG0822 NifU homolog involved in Fe-S cluster formation 12 6 Op 6 . + CDS 11311 - 12714 1521 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 13 6 Op 7 . + CDS 12714 - 13037 291 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 14 6 Op 8 . + CDS 13049 - 14557 1312 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family Predicted protein(s) >gi|256541457|gb|ACPV01000017.1| GENE 1 1 - 789 926 262 aa, chain + ## HITS:1 COG:L190278 KEGG:ns NR:ns ## COG: L190278 COG1063 # Protein_GI_number: 15673531 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Lactococcus lactis # 1 261 85 347 348 302 58.0 5e-82 THGYGHCVACINGFEGNCLNLKPGTNGGYQAEFMKYEPANSGLVKIPGKPGDYTDDQLAS LQTLSDVMATGYHAALNAEVKKGDTVAVIGDGAVGLAGVIGAKLLGAEKIILLSHHDDRA QLGKEFGATDIVSSRDDQAVKDVLALTKENAGADAFLECVGAESAIEQAGQIARPGAVIG RVGVPHAEPKSNQLFWKNVGLRGGIASVTKPDKEVLLQAVLDGKINPGKVFTKSFDLDHI QEAYEAMSNREAIKSLIIVNEK >gi|256541457|gb|ACPV01000017.1| GENE 2 896 - 2152 882 418 aa, chain + ## HITS:1 COG:MA2121 KEGG:ns NR:ns ## COG: MA2121 COG2865 # Protein_GI_number: 20090964 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Methanosarcina acetivorans str.C2A # 3 356 15 375 458 132 28.0 1e-30 MRETKNLEFKENLTNTFLKTVSAYANYGTGEVKFGIKDDGTIIGVKNPIDFCLNVENKIN DSIQPHPDYNLEIDDKTNVVTLTVKQGDNPPYLYKAKAYKRNDSASIEVDRTELSQLILI GENKTYDSLTAANQNLSFNILEMALKEKLGINKLTSDVLITLNLEQKNAGYTNAGELLAD KNHYRGIDVVRFGENINIMLDRANYENESILKEYDQTIQKYRQYYQREEIHGVTRNVISQ IPEEAFREAIANALVHRTWNINAQIKVSMFDNRIEVVSPGGLPHNLSKDEYLSGQISILR NPIVANVFFRLGLIEQFGTGIKRIKDSYQGSLVQPQFEIFENSIKIILPILKFITDDLSD DEKKVFRTIREGANTSTQISRASNFGKTKVLNLLKQLTKQGYVERIGEGRSTKYVLNK >gi|256541457|gb|ACPV01000017.1| GENE 3 2204 - 2905 469 233 aa, chain - ## HITS:1 COG:SMb20375 KEGG:ns NR:ns ## COG: SMb20375 COG2186 # Protein_GI_number: 16264109 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Sinorhizobium meliloti # 15 179 21 174 256 64 32.0 1e-10 MKFHPINVPTATDLFFVNQLKTAILTGKFNLGDKLPSERVLQEQLQVSRTVINSGLKKLA ALHFIEIRPRYGAFVADYRVDGDLQTMNEIINFYGGHYRISLLNSIFEIRKLIENDVVRL DCIEQDEQCLQSAISNMQNLAKATNSKDAAQEIFAYVHSLALASKNYVYPLLINNFKSIY LTLGEWICNEVDVNSISEENLKLIKLIKSGDKNIAIAYNNKLINWSYEILTKQ >gi|256541457|gb|ACPV01000017.1| GENE 4 3049 - 4578 1493 509 aa, chain + ## HITS:1 COG:BH1848 KEGG:ns NR:ns ## COG: BH1848 COG1233 # Protein_GI_number: 15614411 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Phytoene dehydrogenase and related proteins # Organism: Bacillus halodurans # 5 474 10 468 498 119 25.0 2e-26 MAEKYDVIVVGAGNGGLMAAASSARMGKKTLLIERHNLAGGAATSFIRGRFEFEVALHEL CEYGHADNPRAVRKMYDWLGANVKMQELPDTYRYIIYGKDGFDVKMPAGRENFINAMEKY VPGTSEKMEKLFDLCEQSMNALAEIADGKDKKEVIKKYPAFIEYATKSWDDVLNKLKLPK KAQQILGAYWCYIDIPTDEFEFPYFATMLATYVENDAYIPQRRSHDMSTALAQVIYDNGG DVWLSTTVEKILVENGQAVGVQIKGEKVFAKEVICGITPHAVYGNMMDQKCIPEYALKYA NSHKLGTSAFLVYLGLNKSCRELGINDYSVFIASTGDTRKQYENCKTMDKNDFMIMNCLN TVIPNASPKETSVCYITKLVDDGVWDNVKPKDYEKLKVKIAKNAIDEYEQATGIKISDSI EEIAIAAPPTFARYMGTPDGEIYGYHCAPWDQIIGRSMDLKNVVNPLPHLYFCGGHGFMC DGYNVSYTTGLTAAKIAVSDINNMGADHE >gi|256541457|gb|ACPV01000017.1| GENE 5 4571 - 5266 680 231 aa, chain + ## HITS:1 COG:PA5411 KEGG:ns NR:ns ## COG: PA5411 COG1018 # Protein_GI_number: 15600604 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Pseudomonas aeruginosa # 52 215 21 180 366 84 31.0 2e-16 MNKFEEIKGIIDLKKLQNERKHEIQNASDAELPKKYPMNILEEELHPETQYLKITKIIDR DDAKSFVFVPDESKGTSKLAYFQAGQYISLKLHIGKSYCTRAYAISSTPKQALSGEYMLT IKLVKNGYVTPYIWENWKVGTEVAASGPAGQLFYEPLRDKKTIIAGGSGITPFYSMAGAI ADGTIDANLIILYGSRTHNHILLGDELDRIAAKTDKVKVVNILSDEEVVMW >gi|256541457|gb|ACPV01000017.1| GENE 6 5407 - 6645 1006 412 aa, chain - ## HITS:1 COG:FN1676 KEGG:ns NR:ns ## COG: FN1676 COG3547 # Protein_GI_number: 19704997 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 3 412 2 389 391 115 27.0 2e-25 MKLFIGIDVSSKDLQVAITDSENYQKPLLNQSFSNDLIGANEVKKIILQLAKQNSYDKVI IGMEATSIYSFHPAYFFANDEDLQKINLETDVINPKNTKRFHDVYEENKNDPTDAYYIAE YLRFGKYHVTIARQEEYLALQRLTRARYEITSSLTRAKQHFIETLYYRVNKLVTVDKDNI KTSIFGATMLSIVTDSKTIDEIAEMPIEDLIDYLQTKGRGRFSDPETLAKAIRKAVRGSY RLGKVMKDSIDAVLSVYYAEIKTNQKLIKNLDKAITDIVQTLPEERILQSIPGIGSVYSA GIIAEIGSIDRFDTEAQLAKYAGLAWRQKQSSNFDSEHKPMTKNGNHYLRYYLVEAANLI RQRDPVFRKYYQKKYDEAFYSPHKRACVLCARKLTRTIFTLLKNGQIYQTPR >gi|256541457|gb|ACPV01000017.1| GENE 7 7094 - 7531 460 145 aa, chain + ## HITS:1 COG:no KEGG:CLL_A0661 NR:ns ## KEGG: CLL_A0661 # Name: not_defined # Def: putative oxidoreductase # Organism: C.botulinum_B_Eklund # Pathway: not_defined # 1 133 250 382 384 80 33.0 2e-14 MSGPAAMIHFVNQEIKKLDLRPGQVRQEMSGSVNPYFFKNYPEEAKNKTFNMTVKTRDQI QVIPARSDESLLVAMERAGIIAPSSCRSGVCGACRSRVVNGKVFIPFPGRRAADSEYNYV NTCVTFPISDLTLQVPVHDYANMLG >gi|256541457|gb|ACPV01000017.1| GENE 8 7631 - 8425 991 264 aa, chain + ## HITS:1 COG:L34806 KEGG:ns NR:ns ## COG: L34806 COG0396 # Protein_GI_number: 15673775 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, ATPase component # Organism: Lactococcus lactis # 1 259 1 253 256 365 70.0 1e-101 MATLEIKDLHVEVEDKDKKTSKKILKGVNLTLKTGEIHAIMGPNGTGKSTLSETIMGNPR YHITQGDILLNGESIINMPVDERARKGLFLAMQYPAEVPGVTNAEFLRVAINARRPKDDP ISVMTFLNELDKNLDLLDMKEAMTERYLNEGFSGGEKKRNEILQMLMIKPSFGILDEIDS GLDIDALRVVSRGVNAMRGDNFGALMITHYQRLLDYIVPDVVHVMMDGRIVKDGGPDLAK KLEKEGYAGLRDELGLHIKLVDEN >gi|256541457|gb|ACPV01000017.1| GENE 9 8443 - 9651 1029 402 aa, chain + ## HITS:1 COG:SP0868 KEGG:ns NR:ns ## COG: SP0868 COG0719 # Protein_GI_number: 15900751 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pneumoniae TIGR4 # 2 395 1 417 420 328 43.0 8e-90 MLSKENILVSSKENNEPSWLTDLRTSSFEKMHKLSYPKMQRFSYQDWPLIAKEDFKWQNQ PDFFIKKENHDLLNDKGIILCDLFTAIKQYPDLVKSALASVIKNDEDKLTAYHYAYLNSG LFLYIPKNTVLAEPITVTLNPTQDPYISHLLIVTEDNSQVKFLEEIQNEDKAVKSANLMV EIVAHPGSHVEFSSLDEMDKDTTLYFNRRARIENDAHVEWAIAFMNDCNTLGDLDSELIG EGSYADSKAIAVTTGDQRVGINNRVTNRGPHSTGLINQRGVLLENSQLIFNGIGQIVHGA HGSKADQQNRVLMMSDNAHGDANPLLLIDENDVIAAHAASVGPVDQIQMNYLMSRGIPYD QAQRLVIRGFLGAVLDAIPNKEVRQKMIDILEKKLIDGQTRR >gi|256541457|gb|ACPV01000017.1| GENE 10 9632 - 10870 1296 412 aa, chain + ## HITS:1 COG:lin2508 KEGG:ns NR:ns ## COG: lin2508 COG0520 # Protein_GI_number: 16801570 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Listeria innocua # 4 409 2 407 408 498 58.0 1e-141 MDKLDVKKIKADFPILNQKINDEKLIYLDNAATSQMPLVVEKQIEHFTNFDRANVHRGVH TLGLRATQKYENARQKVADFIGAKNASEIVFTSGCTDSLNLVAATYGEQNIQAGDEIVVS IMEHHSNFLPWQQIALRKNAKLKFIEIDANGRLDLEDAKSKITTKTKIVAITHVSNVLGT INPIAALTSLAHKNGAIVVVDGAQAVGHFPVNVTDLDADFYAFSGHKMFAPTGVGVLYGK KALLEQMPPYRFGGEMITNVTRKGATWAPVPQKFEAGTPNISGVIGVGAAIDYLGKLDLT LIQKHEDSLTAYALKELSKIDDLVVYGPKDCSNRTGVISFNLRKIHPHDLATALDLNGVE VRAGHHCAQPLMESLKTESTVRASFSIYNTKNDIDQLVSSIQEAKEFFGELR >gi|256541457|gb|ACPV01000017.1| GENE 11 10806 - 11318 306 170 aa, chain + ## HITS:1 COG:BS_yurV KEGG:ns NR:ns ## COG: BS_yurV COG0822 # Protein_GI_number: 16080320 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Bacillus subtilis # 15 163 2 144 147 134 48.0 1e-31 MILINWLVQFKKQRSFSVSLDKLKSLYKAVILDHAQTPRNFGQLANYTNETTVYNPTCGD KIHLTILVENDQIKDIAFDGEGCTISKASASMMTQLVKGKNIEQAISFSRIFSDLAAGKK RSEQDMQKLEDAQVLISIMEFPARIKCATLAWWGLDRALLGKENEDEDND >gi|256541457|gb|ACPV01000017.1| GENE 12 11311 - 12714 1521 467 aa, chain + ## HITS:1 COG:SP0871 KEGG:ns NR:ns ## COG: SP0871 COG0719 # Protein_GI_number: 15900754 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pneumoniae TIGR4 # 12 467 15 470 470 679 71.0 0 MTKAEEIVKDEDYQFGFHDNVKPKFSTGHGLTEDVIRQISAEKHEPKWMLDYRLKAFHIY EKMPMPSFGPDLSGLDLDDMLYYQKMTDKKYRDWNDVPQDIKDTFERLGVPQAERKYLAG SAAQYESEMVYHKMKEQFDKLGIIFTDTDTALQEYPDLLKKYFGKLVPIDLNKFSALNCA VWSGGTFIYVPKGVQVPAPVQAYFRLNAENSGQFERTLIIVDQDAHLDYVEGCTAPQYSS DSLHAAVVEVNVLDNAYCRYTTIQNWSDNVYSLETKRAVAGKHATMEWVDGNLGAKVTMK YPSVYLNGEGARGTMLSIAVAHHGIHQDSGAGMFHNAPNTSSSIVSKSIAKGGGSTDYRG SVKFSKKSDGSKAHVECDTIIMDDQSSSDTIPTNAIENSNVAMEHEATVSKISEDQLYYL ESRGISERKATEMIIMGFVEPFTKQLPMEYAVELNRLISFQMEGAIG >gi|256541457|gb|ACPV01000017.1| GENE 13 12714 - 13037 291 107 aa, chain + ## HITS:1 COG:SPy0783 KEGG:ns NR:ns ## COG: SPy0783 COG2151 # Protein_GI_number: 15674828 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Streptococcus pyogenes M1 GAS # 14 105 19 111 112 94 51.0 5e-20 MLEIENLSDQEKDVYQALKDVIDPELQVDIVDLGLIYGIEVNDHLCQITMTLTIMGCPLS EWLNNEITKAAESVAEIDDCQIKLVWYPQWNPNMMSRIARMTLGIHG >gi|256541457|gb|ACPV01000017.1| GENE 14 13049 - 14557 1312 502 aa, chain + ## HITS:1 COG:L91569 KEGG:ns NR:ns ## COG: L91569 COG1914 # Protein_GI_number: 15673064 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Lactococcus lactis # 2 301 7 306 314 393 70.0 1e-109 MENHSFISYANGKSLAEINSTIAVPKTKNFFRMLFAYTGPGALVAVGYMDPGNWAASING GQSFNFLLISTILISSLMAMLLQYMSAKLGIVTQMDLAQAIRARTSKRLSFILWIVIELA IMATDVAEVIGAAIALNLLFKIPLVIATFITIFDVFLLLLLSKVGFRKIEALISCLIMVI LFVFAYQVMLAEPNWSKIFLSVFPSPELVAQHPVVNGLSPLTGSLGIIGATVMPHNFYLH SSICQTRKINHHDPDDVKNAVRFTTWDSNIQLILAFFVNVLLLIMGAAVFKSGAVKDSSF FGLYDALSNTAMLSNPILISVAKTGILSVLFAIALLASGQNSTITGTLTGQIVMEGFIHL KMPLWARRLFTRLLSVIPVIICVVMTANDTISQQHFALNMLLENSQVFLAFAVPFSIVPL LIMTDDKRMMGQFKNRRSWSVLGWISSIILIFLNLYNLPATFVSFNIMPKQDAKIFAYAI IVLIILLLAWTCWDMEKSKIRH Prediction of potential genes in microbial genomes Time: Wed May 25 05:08:09 2011 Seq name: gi|256541456|gb|ACPV01000018.1| Lactobacillus crispatus 125-2-CHN cont1.18, whole genome shotgun sequence Length of sequence - 6904 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 5, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 49 - 100 -0.9 1 1 Op 1 . - CDS 334 - 783 328 ## gi|227877525|ref|ZP_03995588.1| hypothetical protein HMPREF0506_0589 2 1 Op 2 . - CDS 809 - 1717 1191 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 1769 - 1828 4.4 3 2 Tu 1 . - CDS 1830 - 2399 473 ## COG1309 Transcriptional regulator - Prom 2449 - 2508 4.8 4 3 Tu 1 . + CDS 3002 - 3757 705 ## lp_2871 transcription regulator + Prom 3799 - 3858 7.1 5 4 Op 1 . + CDS 3993 - 4364 419 ## LAF_0631 hypothetical protein 6 4 Op 2 . + CDS 4380 - 4985 538 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Prom 4987 - 5046 9.1 7 5 Op 1 10/0.000 + CDS 5068 - 5979 1105 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases + Prom 5984 - 6043 3.3 8 5 Op 2 . + CDS 6110 - 6823 552 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Predicted protein(s) >gi|256541456|gb|ACPV01000018.1| GENE 1 334 - 783 328 149 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227877525|ref|ZP_03995588.1| ## NR: gi|227877525|ref|ZP_03995588.1| hypothetical protein HMPREF0506_0589 [Lactobacillus crispatus JV-V01] # 1 149 1 149 149 278 100.0 6e-74 MNKQIVYFSNSGNNERLAKRIAHYYGVNATPIIPVNPYPNKYHELTSQAKIERFRHINVA IKPVKLESNINTLILVSPIWYADLPRPVVTFLKQVQRSFQHVVFVSDKFMIGFGICKRTL KKYLSKQTTIDLIAANSNNFSLVKQYFQK >gi|256541456|gb|ACPV01000018.1| GENE 2 809 - 1717 1191 302 aa, chain - ## HITS:1 COG:ECs1909 KEGG:ns NR:ns ## COG: ECs1909 COG1073 # Protein_GI_number: 15831163 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Escherichia coli O157:H7 # 1 302 6 310 310 249 41.0 4e-66 MQKKVTFKNNEHDMSGILFFPDNFDENKQYPAFSIASPAGAVKEQIATNYDSRLAKYGFI ALAFDTSHQGESGGNPRQLEAPYERVEDIKCAIDYLTTLPYIDNNRLGQLGICAGGGYSM HTAMTDRRIKAVVAVSMSDPASWIRDGFDGKTSVETQLALLEEASNQRTREANGAEPIYG TFVPEEVTEGMPNTLVEAHEYYRTPRVQHPRSTNKVSMMSIDKMTDFSTFLFADRYSTQP ILMIAGSNADTFRFSEDLLKKAASTNKELFTIEGATHGDLYDKPEYVDQAVEKAAAFFKE NL >gi|256541456|gb|ACPV01000018.1| GENE 3 1830 - 2399 473 189 aa, chain - ## HITS:1 COG:alr1721 KEGG:ns NR:ns ## COG: alr1721 COG1309 # Protein_GI_number: 17229213 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Nostoc sp. PCC 7120 # 1 187 1 188 190 132 38.0 5e-31 MRYKDEHKKEAIYEATILLLNKEGFSSTSMSKIAKHAGVSASTIYIYFKNKDDMLKKLYL DTKKKMSAKMFTDTTNDDAKSSLAKVIRNYIDFILDNQDAFLFLQQFTNSPYMTELDERE ASTYFTPMYQLVKKGQEEGTFKDVDANLLFAYIEPPITELAKRHFKGEIDFTEERIDVLI NLAWSAIKK >gi|256541456|gb|ACPV01000018.1| GENE 4 3002 - 3757 705 251 aa, chain + ## HITS:1 COG:no KEGG:lp_2871 NR:ns ## KEGG: lp_2871 # Name: not_defined # Def: transcription regulator # Organism: L.plantarum # Pathway: not_defined # 2 251 45 294 295 259 52.0 8e-68 MLDVKLFDRKGRSFELTAAGEFFYQHAKEVVKTTNELIDQTQKIGKLPINYELRLGYLSN FGTNEFLHTVAHFSQMYPEVEVKIKSGTHEQLFELLKHDRIDLAFSDQRRALSNEYHNEF LTETDFMVVLPLNYPDNNRILATQLADLSCILIVNETQKAAEEQYYRDALGIKSRFLTVT TIDEAQIMVAANQGYFIVNKRTQAMINKETVKTIPLYAGDIPLQQNYYTYWKQDNSGFYI EKFAELLKKQF >gi|256541456|gb|ACPV01000018.1| GENE 5 3993 - 4364 419 123 aa, chain + ## HITS:1 COG:no KEGG:LAF_0631 NR:ns ## KEGG: LAF_0631 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 2 123 4 125 125 136 53.0 2e-31 MTDKEVIIDLYRQENRAIVDKDIETLGQILDSTMVLHHMTGYAQPKLEWIDQIQNGELKY YSSDEEQISDIQIAGNHASLIGHNKVKASVWGSPVSTLLLQMKMEFAKINGKWAITKQIA STY >gi|256541456|gb|ACPV01000018.1| GENE 6 4380 - 4985 538 201 aa, chain + ## HITS:1 COG:ECs1906 KEGG:ns NR:ns ## COG: ECs1906 COG0702 # Protein_GI_number: 15831160 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1 200 9 210 220 149 41.0 5e-36 MKNILIIGATGALGTTTTQTVLNETDNHLTLFARSANRINVIDPQRETVISGDVLNDHDL DKALVGQDAVFAALSGDLVAYAKQIVAAMDRNNISRLIFISSMGIYNEIPASIGISSNLE SNPILQSYRDAADIVEASNLNYTVIRPGWFTGGPVNYEITHKGEPFGGPDVSIKSIVDLV TKLLNDDELYSCESIGINKPS >gi|256541456|gb|ACPV01000018.1| GENE 7 5068 - 5979 1105 303 aa, chain + ## HITS:1 COG:L190278 KEGG:ns NR:ns ## COG: L190278 COG1063 # Protein_GI_number: 15673531 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Lactococcus lactis # 1 303 1 347 348 353 54.0 2e-97 MKAAVFMESGKMEVHEVEKPIIQKPTDAILKIVRACVCGSDLWWYRGITNREKGSLVGHE AIAIVEEVGDNVKDIKPGDFVIAPFTHGCGHCVACLAGFDGNCVNQEAGSNGGYQGEYLR FTNANWALVKIPGHPSDYTDEQLNDLLTLADVMATGYHAAASAEAKEDDTVAVIGDGAVG LCGVIGAKLRGDDAVKKVLECVGAVSAIEQAGKLARPGAIVGRVGVPQTEPSSNTLFWKN IGLRGGIASVTTYDRAILLDAVLKGKIHPGKVFTKRFSLDKIQQAYEVMDKREAIKSLII VSE >gi|256541456|gb|ACPV01000018.1| GENE 8 6110 - 6823 552 237 aa, chain + ## HITS:1 COG:SPAC1348.09 KEGG:ns NR:ns ## COG: SPAC1348.09 COG1028 # Protein_GI_number: 19113683 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Schizosaccharomyces pombe # 1 231 1 234 236 129 32.0 6e-30 MRSPEKETELTSYQNVFIYPLDVTKPEQISQTVSEVLKKHEVDVLFNNAGYGMKSRFEDM TEEAMQQSLNTNLLGMICVTQKFIPYFKKKKSGLILTTTSLAGEMGLALDGIYAADKWAV TGVCEMLYHELAPFGIQVKIIVPGVVKTGFKMETFAMPGFDQLLKNQTKMLMPDTDSLES PEEVAQDIFKAVTDKDRDRMCYVTGKITKELYEKRQKLGDEAFRRYIRNQLMSKRKV Prediction of potential genes in microbial genomes Time: Wed May 25 05:08:23 2011 Seq name: gi|256541455|gb|ACPV01000019.1| Lactobacillus crispatus 125-2-CHN cont1.19, whole genome shotgun sequence Length of sequence - 5000 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 4, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 269 - 328 6.8 1 1 Tu 1 . + CDS 381 - 1748 1325 ## COG1114 Branched-chain amino acid permeases + Term 1798 - 1845 11.4 + Prom 1756 - 1815 3.4 2 2 Tu 1 . + CDS 1866 - 2096 248 ## LCRIS_00936 alpha/beta hydrolase superfamily protein + Term 2305 - 2349 7.6 + Prom 2237 - 2296 5.7 3 3 Tu 1 . + CDS 2356 - 3867 1186 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 4016 - 4053 0.7 - Term 4101 - 4159 11.2 4 4 Tu 1 . - CDS 4168 - 4839 489 ## COG3548 Predicted integral membrane protein - Prom 4872 - 4931 6.5 Predicted protein(s) >gi|256541455|gb|ACPV01000019.1| GENE 1 381 - 1748 1325 455 aa, chain + ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 4 448 3 447 449 333 44.0 5e-91 MKTKKASIRRSMIIASLIFGMLFGAGNLIFPVHLGQLAGSNWLIASSGFLLSGVLLPLMA LLAISITKSNGIYDLALPNGRYYALIFLILVHATLGPLFATPRTATVPYEIGIAPYLSKS TNTLGLLIYSAIFFSLVYLFSNHEGKITTLIGKVLNPLFLLLLFLIFLLAFINPLGSRNT AAITASYARHAFSNGFLQGYNTMDGLAALAFGITIITAIRELGIKKTRQISLATAKSGFL GIAGVAIIYLALIWLGATSLHQFKLAANGGITLAQISHHYLGTAGDAILATLATITCMTS AMGLVIAFSQDFHRRFPKISYRTFLRINCGLSFLFANLGLNQIIAWSTPILMFLYPLAIT LIILGLLSPLFKNDRLVYRITTELTLIPAFFDMLNALPAGLHESRLLQTLLGFAQQYFPF FNLGFGWLTFGIAGLILGLICHVLRVRKRLGLISE >gi|256541455|gb|ACPV01000019.1| GENE 2 1866 - 2096 248 76 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00936 NR:ns ## KEGG: LCRIS_00936 # Name: not_defined # Def: alpha/beta hydrolase superfamily protein # Organism: L.crispatus # Pathway: not_defined # 1 76 94 192 192 106 62.0 2e-22 MGLNINGKPNKINSTYQQMTGVRELYMKKHVQVLNIIGDGDSTYKVEKINGKNAQHSKLH ENAQVDQALIKFLWNK >gi|256541455|gb|ACPV01000019.1| GENE 3 2356 - 3867 1186 503 aa, chain + ## HITS:1 COG:L119564 KEGG:ns NR:ns ## COG: L119564 COG0488 # Protein_GI_number: 15672881 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 503 1 512 513 380 42.0 1e-105 MSNLKISRLSFEYEDSNRYIFKNLNLDLDTDWKLGLIGRNGRGKTTFLNLLRGKYCGTGQ IQGNASFSYYPVKIQNSKNITFYELQDQVAFEQWKLERELTLMNLDPDLLWQPFNTLSGG EQTKILLALSFTDQDSFPLIDEPTNHLDETSRKQVAEYLNGHDQGYIVVSHDRDFLNQVT DHILAIENTAIHLYQGNYSTYEVTKKRRDDFDREKNKKLTGQVKKLNQEKVQFHNWAAKI EARKKLGMKTQHIINRRTRLNKGAIGHQAAKMMKKSINARNRMDKRIAEKEGMLKNIEKV PTLTMNFQADYHREILQLNDLSLQLKNSRELFKSLTLSLNNHEIIAIEGKNGSGKSTLIK HLLGISQNLIAKGNYELIESLKISYLPQEFVMYSGSLKDFAKKYHLSYEALLSNLKKMGF ARADFTTRIEKMSMGQQKRVALAKSLTEPANLYLWDEPANYLDVFNQDQLIKLLKSVKPT MLLIEHDPYFITSVADQQIKLTN >gi|256541455|gb|ACPV01000019.1| GENE 4 4168 - 4839 489 223 aa, chain - ## HITS:1 COG:L111003 KEGG:ns NR:ns ## COG: L111003 COG3548 # Protein_GI_number: 15672091 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 32 215 122 304 331 104 31.0 1e-22 MPRNPRRHNFNQFSDQEKDKLKNVKKELAEAQKKEPESLQAFNDGVMAIIITIIVLEIQP ALHEIHYQQFISNIAVFLITFFIVADFWYDLHLSFSYYIFKPSKAIAILDFFFLADLSLL PVMTKWIMAENSSFAVANLGIVFLIAKILEYLIQYFGAKNTARYSQIMRIIISRSFIRKM TVTLFLNVILIILSLFNAKLAMILYLIVPVISFLFPVKRNKIM Prediction of potential genes in microbial genomes Time: Wed May 25 05:08:27 2011 Seq name: gi|256541454|gb|ACPV01000020.1| Lactobacillus crispatus 125-2-CHN cont1.20, whole genome shotgun sequence Length of sequence - 5310 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 1085 621 ## COG4292 Predicted membrane protein 2 1 Op 2 . + CDS 1072 - 1695 749 ## COG1051 ADP-ribose pyrophosphatase + Term 1721 - 1777 -0.9 3 2 Tu 1 . + CDS 2080 - 3456 1377 ## COG1114 Branched-chain amino acid permeases + Term 3472 - 3508 5.0 + Prom 3488 - 3547 7.0 4 3 Tu 1 . + CDS 3573 - 5310 1439 ## LCRIS_00942 putative protein without homology Predicted protein(s) >gi|256541454|gb|ACPV01000020.1| GENE 1 3 - 1085 621 360 aa, chain + ## HITS:1 COG:SA0341 KEGG:ns NR:ns ## COG: SA0341 COG4292 # Protein_GI_number: 15926054 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 3 303 13 320 377 107 30.0 4e-23 IAKPVGMFELFYDLVFVYAISRITAMIHHPVNGSIPLVTFLQFLLVVIVVMQIWLYQVIY FNRYSKNQFLDIGGLGLNMFVAVYLANNINTEWQVTFHYFNIAMAVMILILFCQYLFVKA DNNDKQAFLIILGIEFILIIVGLIIGYPVGIYFCISGYIVGFILPLFLKGMFKTERVNFP HLVERVSLIVIIAFGEAIVNLTSYFNSKTPLVYAAFLFLSLVLMFASYVVLSDKLIDHHQ ISKGFVLMYSHIAIVVAILLSTVAILYLQVHDINKTFLFFLIIFSMALYYFSLAINQVYN KSECRFSIRNLLTLLLIFALGVSYLWVVIKSKIGISIYLLIWNLLFFLEFYIKGNKNEFR >gi|256541454|gb|ACPV01000020.1| GENE 2 1072 - 1695 749 207 aa, chain + ## HITS:1 COG:BH3089 KEGG:ns NR:ns ## COG: BH3089 COG1051 # Protein_GI_number: 15615651 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Bacillus halodurans # 1 201 1 201 207 150 40.0 1e-36 MNSDDQFIKWATDLQSLAQAGLHYGHDVFDRERYEKIRKIAGEMMAARTGLPKEQIKTLF LGDEGYQTPKIDTRAAIFKDNKILLVREKMTQEWSLPGGWNDYDQTTAQNCVKEAYEEAG RVVRPVKIIAVQDRNHHNKPILATNITKVFYLCKEISGEFKPNDETDACDYFALDNLPKL SLGRNTEEQITMCFAANNDPNWQTQFE >gi|256541454|gb|ACPV01000020.1| GENE 3 2080 - 3456 1377 458 aa, chain + ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 7 450 3 447 449 316 41.0 5e-86 MTDHTSKKLTWKNYLVVASLLFGLFFGAGNLIFPLHLGQLAGANWGTAAVGFLITGVLLP LFSVLAVAITHADGVYDIGKPLGAGFAVVFMVLIHATIGPLFGTPRTATVSFTVGIAPFM PKNMQSSALLVFSALFFLAAFAFSYHQNNILSNVGKVLNPLFLALLFLVFLVAFARPLGN PQTAAVTAAYKHGALVNGFLEGYNTMDALAGLAFGVTVVTAVRGMGQKDAKSVSKVVAKS GVLAVLEIGFIYLLLILMGAMSLGRFAVSDNGGVAFNQIVNVYGGVFGQALLAFLLTVTC LTTAVGLVAAFAQDFHKHFPKVSYHVWLALSCLASFLTANFGLDQIISWSTPMLMFLYPL SMVLILLSVCSPLFNKEGVVYFFVILFTVVPALGDMVVAFPSVVSQSSFGLAVASLRSHL PLVSMGLSWLVPALVGLAIGLVVYHVRNKKTVPVLEED >gi|256541454|gb|ACPV01000020.1| GENE 4 3573 - 5310 1439 579 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00942 NR:ns ## KEGG: LCRIS_00942 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 579 1 579 579 1056 98.0 0 MLQVRYGINLAPEIKENKIDIIKNEPFTIWDAGVINIQKQKYYLLVEKDTSFPILLTKLD AKLFNNVFANAIKSYDFILFKQQQKLVSAVKSKQMSFYDTKSQASLMLEKIRKLIEDNQS EYLNLIDVVKDEKNMVDKLTVMSATIFALDSQIGQNFISKMIDEVSTYFPIKPQKPNRRY KYVDLVPKFEDFSNFEKYENKSVKGNEKIVAKIKENNQKLIDQYAKYVPAEIGYIQPDQM LPDYLNHYLLRNKIHLVTNDLGEAISYLWIMISNNKLHPLEIEQITNTLKNFYVFLSRVG LIRKTDSKEIGMNIDWVVEEINSYSDQSLDEDLINDMIAAIEANPKKILELEDLDLSPQD LSRILEGLRKDLESHDKKQKTRKKTIFENQTRNRATYEIRVKLKSFKPSTWRRFIISGNT SVKTLEVAMLDMFNADFGHMFDLLNKKTQERFENAESIAEAKDWDPATGIDYEKAKVSYF EKRDKLLLTYDYGDSWEFEVDIKNITTDQAAPKCPKILSGKGYGIIDDIGGVWSLQDYYD TPKDKVDPEMIDWLMGGEAIDLDKFDKEELNQRMEQYKN Prediction of potential genes in microbial genomes Time: Wed May 25 05:08:35 2011 Seq name: gi|256541453|gb|ACPV01000021.1| Lactobacillus crispatus 125-2-CHN cont1.21, whole genome shotgun sequence Length of sequence - 1547 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 47 - 541 551 ## COG2077 Peroxiredoxin - Prom 625 - 684 6.4 + Prom 509 - 568 6.5 2 2 Tu 1 . + CDS 707 - 865 73 ## LCRIS_00944 putative protein without homology + Term 1005 - 1042 0.4 3 3 Tu 1 . - CDS 932 - 1465 313 ## COG0583 Transcriptional regulator - Prom 1487 - 1546 3.6 Predicted protein(s) >gi|256541453|gb|ACPV01000021.1| GENE 1 47 - 541 551 164 aa, chain - ## HITS:1 COG:BS_ytgI KEGG:ns NR:ns ## COG: BS_ytgI COG2077 # Protein_GI_number: 16080001 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Bacillus subtilis # 2 164 3 166 167 139 43.0 3e-33 MKVTFKGKEVELIGTPPKVGDEMPNFTVLDKNKQEVTKDNLLGKNTLISVVPDINTSVCS IQTKTFNKTMDQFPDVNFLTISTNTIKDQQNWCAAEGVKNMQLMSDEKLSFGKATGLLIP ESGILARSVWILEPNGKIVYREIVDEITHEPDYNTAVNELKKLL >gi|256541453|gb|ACPV01000021.1| GENE 2 707 - 865 73 52 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00944 NR:ns ## KEGG: LCRIS_00944 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 52 1 52 52 61 100.0 9e-09 MLIGTFSLFSIMMLLNNWSINIWTLFIFILSYVVIWITIKLTQNRQIKKRNS >gi|256541453|gb|ACPV01000021.1| GENE 3 932 - 1465 313 177 aa, chain - ## HITS:1 COG:STM2424 KEGG:ns NR:ns ## COG: STM2424 COG0583 # Protein_GI_number: 16765744 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 4 170 1 189 308 68 29.0 5e-12 MNKLNFELLHIFDVVSRFASFSQASNYLYLDQSTVSKKIRQLEAIVNKKLFIRNTNGIVL TAAGLAFKNKSDKILQDLKEIIALKPTITTLRVGVFDNISAYLMPDIFAENFNLFNEGKL DAIVINSDFFTQIQGSAIETQITNESFAILFRKNNALIASQNSISLNDLKNKNRKSK Prediction of potential genes in microbial genomes Time: Wed May 25 05:08:38 2011 Seq name: gi|256541452|gb|ACPV01000022.1| Lactobacillus crispatus 125-2-CHN cont1.22, whole genome shotgun sequence Length of sequence - 2422 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 167 - 226 8.2 1 1 Tu 1 . + CDS 373 - 612 404 ## LCRIS_00950 hypothetical protein + Term 630 - 675 7.3 + Prom 659 - 718 5.9 2 2 Tu 1 . + CDS 834 - 2420 164 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein Predicted protein(s) >gi|256541452|gb|ACPV01000022.1| GENE 1 373 - 612 404 79 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00950 NR:ns ## KEGG: LCRIS_00950 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 79 1 79 79 131 96.0 8e-30 MNTIAFNQQLSDKLNEELNPELFSTPGKGEITVVANEKKDLREYRIITKDNKVVDVVDAY DADHDAAYQKMIDFLKNYR >gi|256541452|gb|ACPV01000022.1| GENE 2 834 - 2420 164 529 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 321 528 5 212 311 67 26 8e-12 MSITGIFKVNKAKFILIFLMVIIGTTVDAASQYLMTPAFNQLKKMNLFGFIIFICLAIGC DLVRLALITSSDYLYGKQSQSYLHQIRVKISRYFFKNEIAQTAKVQNELVANLDQLTQNY LKPIKNGFMYLLSVLFSIGILFSFNWLLVVMTVILTAISLFLPKTFEKMTSSATIKVTKK NEKFLNTLAKWMSGLDELRRYASFNIFSESVNQSADEYKKAAIHQGATIAIADMITFVVN IVGQMLLMVLCAYLYLQGQIVFGAVITTIQFSSTVMNGVSAFVTEWNLIKSTKDLNKEIT NLQAPVKIAPDQHQVKKINRLEVKDLALQFKNGEYLSYPDFTVKQGEKILLTGDSGTGKS TLFKLILGKLTPSQGEINFFDHNGQKLNFDLDELGYIAQDNTLFPDTIANNVTMFNSALN NQISGVLDQVGFTKDLDKMSAGLNSQIDLDKGNLSGGQRQKLVLARALIHQSPWLLIDEG TSAIDSAGTKQVLQNLLNTPSTVIMIAHNYSTELVSMFDRQIKLTNRGD Prediction of potential genes in microbial genomes Time: Wed May 25 05:08:59 2011 Seq name: gi|256541451|gb|ACPV01000023.1| Lactobacillus crispatus 125-2-CHN cont1.23, whole genome shotgun sequence Length of sequence - 63934 bp Number of predicted genes - 61, with homology - 59 Number of transcription units - 32, operones - 17 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 10 - 1593 175 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 + Prom 1622 - 1681 4.6 2 2 Tu 1 . + CDS 1783 - 3096 1384 ## COG1113 Gamma-aminobutyrate permease and related permeases + Prom 3111 - 3170 5.9 3 3 Op 1 16/0.000 + CDS 3230 - 4186 1071 ## COG0207 Thymidylate synthase 4 3 Op 2 . + CDS 4196 - 4705 323 ## COG0262 Dihydrofolate reductase + Term 4709 - 4754 2.2 + Prom 4707 - 4766 8.0 5 4 Tu 1 . + CDS 4791 - 7193 1891 ## COG0474 Cation transport ATPase + Term 7199 - 7251 5.1 - Term 7188 - 7234 5.1 6 5 Tu 1 . - CDS 7235 - 8176 927 ## LCRIS_00957 DNA-entry nuclease - Prom 8210 - 8269 9.4 + Prom 8514 - 8573 2.9 7 6 Op 1 10/0.000 + CDS 8595 - 9449 858 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 8 6 Op 2 32/0.000 + CDS 9462 - 10526 1186 ## COG1135 ABC-type metal ion transport system, ATPase component 9 6 Op 3 . + CDS 10519 - 11202 885 ## COG2011 ABC-type metal ion transport system, permease component + Term 11209 - 11243 4.0 + Prom 11223 - 11282 6.1 10 7 Op 1 . + CDS 11333 - 12736 1968 ## COG0114 Fumarase 11 7 Op 2 . + CDS 12748 - 14124 1713 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 14147 - 14181 2.1 + Prom 14226 - 14285 5.1 12 8 Tu 1 . + CDS 14334 - 15263 1230 ## COG0039 Malate/lactate dehydrogenases + Term 15286 - 15324 4.1 + Prom 15297 - 15356 6.6 13 9 Tu 1 . + CDS 15402 - 16718 1576 ## COG3579 Aminopeptidase C + Term 16740 - 16787 7.7 + Prom 16787 - 16846 11.2 14 10 Op 1 2/0.000 + CDS 16971 - 17669 837 ## COG0684 Demethylmenaquinone methyltransferase 15 10 Op 2 . + CDS 17686 - 19155 1559 ## COG0471 Di- and tricarboxylate transporters + Term 19163 - 19199 4.0 + Prom 19157 - 19216 1.8 16 11 Op 1 . + CDS 19237 - 20028 686 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 17 11 Op 2 5/0.000 + CDS 20109 - 21164 905 ## COG3053 Citrate lyase synthetase 18 11 Op 3 6/0.000 + CDS 21154 - 21447 454 ## COG3052 Citrate lyase, gamma subunit 19 11 Op 4 6/0.000 + CDS 21448 - 22362 1210 ## COG2301 Citrate lyase beta subunit 20 11 Op 5 . + CDS 22400 - 23893 1699 ## COG3051 Citrate lyase, alpha subunit + Term 23922 - 23967 5.1 21 12 Op 1 . + CDS 24310 - 24765 704 ## COG2707 Predicted membrane protein 22 12 Op 2 . + CDS 24795 - 24956 81 ## LCRIS_00973 putative protein without homology - Term 24921 - 24971 2.0 23 13 Op 1 34/0.000 - CDS 24974 - 25807 751 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 24 13 Op 2 3/0.000 - CDS 25800 - 27509 1605 ## COG1122 ABC-type cobalt transport system, ATPase component 25 13 Op 3 . - CDS 27513 - 28070 604 ## COG4720 Predicted membrane protein - Prom 28198 - 28257 6.5 + Prom 28137 - 28196 6.1 26 14 Tu 1 . + CDS 28228 - 28608 610 ## LCRIS_00977 hypothetical protein + Term 28614 - 28660 6.2 - Term 28871 - 28901 2.0 27 15 Op 1 . - CDS 28908 - 29234 319 ## LCRIS_00978 transporter protein 28 15 Op 2 . - CDS 29282 - 30220 722 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain - Prom 30252 - 30311 8.9 + Prom 30222 - 30281 8.3 29 16 Tu 1 . + CDS 30384 - 31730 1212 ## LCRIS_00980 membrane protein + Term 31751 - 31787 4.1 - Term 31739 - 31773 2.1 30 17 Op 1 . - CDS 31794 - 32033 163 ## gi|227879052|ref|ZP_03996942.1| hypothetical protein HMPREF0506_1943 31 17 Op 2 . - CDS 32069 - 33559 1229 ## LGAS_1655 hypothetical protein - Prom 33645 - 33704 2.2 32 18 Tu 1 . - CDS 33764 - 34372 510 ## LGAS_1655 hypothetical protein - Prom 34545 - 34604 10.4 + Prom 34458 - 34517 12.2 33 19 Tu 1 . + CDS 34603 - 34791 75 ## 34 20 Tu 1 . - CDS 34838 - 35347 628 ## COG2606 Uncharacterized conserved protein - Prom 35392 - 35451 5.7 + Prom 35314 - 35373 8.6 35 21 Op 1 . + CDS 35408 - 36352 1607 ## PROTEIN SUPPORTED gi|227879056|ref|ZP_03996946.1| ribosomal protein L11 methyltransferase 36 21 Op 2 . + CDS 36408 - 36641 147 ## LCRIS_00983 uncharacterized conserved secreted or membrane protein + Prom 36653 - 36712 7.7 37 22 Op 1 7/0.000 + CDS 36785 - 39025 2601 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 38 22 Op 2 . + CDS 39025 - 39462 389 ## COG1490 D-Tyr-tRNAtyr deacylase + Term 39687 - 39724 7.0 + Prom 39671 - 39730 7.4 39 23 Op 1 13/0.000 + CDS 39758 - 41044 1454 ## COG0124 Histidyl-tRNA synthetase 40 23 Op 2 . + CDS 41050 - 42903 2290 ## COG0173 Aspartyl-tRNA synthetase + Term 42914 - 42979 13.1 - Term 42894 - 42967 14.1 41 24 Op 1 . - CDS 42969 - 44153 1375 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 44175 - 44234 7.0 42 24 Op 2 . - CDS 44272 - 44529 225 ## LCRIS_00989 putative protein without homology - Prom 44601 - 44660 9.1 + Prom 44548 - 44607 6.1 43 25 Tu 1 . + CDS 44633 - 45823 1138 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase + Term 46017 - 46064 3.2 44 26 Tu 1 . - CDS 45837 - 46037 206 ## - Prom 46149 - 46208 8.3 + Prom 46033 - 46092 10.3 45 27 Op 1 . + CDS 46328 - 46546 256 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 46 27 Op 2 . + CDS 46638 - 46886 278 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 47 27 Op 3 1/0.000 + CDS 46941 - 47162 79 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 47165 - 47200 3.3 48 27 Op 4 . + CDS 47211 - 48023 791 ## COG0561 Predicted hydrolases of the HAD superfamily 49 27 Op 5 . + CDS 48090 - 49055 984 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Term 49075 - 49108 3.1 - Term 49061 - 49094 3.1 50 28 Op 1 . - CDS 49122 - 50507 1344 ## COG0531 Amino acid transporters - Prom 50532 - 50591 6.7 - Term 50563 - 50598 4.0 51 28 Op 2 . - CDS 50605 - 51219 250 ## PROTEIN SUPPORTED gi|154175107|ref|YP_001408238.1| ribosomal protein L22 - Prom 51243 - 51302 6.6 + Prom 51202 - 51261 7.9 52 29 Op 1 . + CDS 51359 - 53161 1634 ## COG0322 Nuclease subunit of the excinuclease complex 53 29 Op 2 . + CDS 53240 - 54544 1563 ## COG0536 Predicted GTPase 54 29 Op 3 . + CDS 54560 - 56476 1217 ## COG1835 Predicted acyltransferases 55 29 Op 4 4/0.000 + CDS 56494 - 57432 775 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 56 29 Op 5 . + CDS 57429 - 58223 832 ## COG0300 Short-chain dehydrogenases of various substrate specificities 57 29 Op 6 . + CDS 58230 - 58478 165 ## LCRIS_01002 hypothetical protein 58 30 Op 1 . + CDS 58581 - 58769 330 ## PROTEIN SUPPORTED gi|227879080|ref|ZP_03996969.1| 50S ribosomal protein L32 + Term 58776 - 58807 -0.7 59 30 Op 2 . + CDS 58829 - 60385 1452 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases + Term 60399 - 60439 4.1 - Term 60375 - 60437 5.7 60 31 Tu 1 . - CDS 60447 - 60665 289 ## LBA0954 hypothetical protein + Prom 60691 - 60750 10.3 61 32 Tu 1 . + CDS 60781 - 63888 2914 ## COG0587 DNA polymerase III, alpha subunit Predicted protein(s) >gi|256541451|gb|ACPV01000023.1| GENE 1 10 - 1593 175 527 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 320 508 11 201 312 72 28 8e-12 MSFKGFIKTNYLRFIYINILSVISGVAAIGAGYIQMYWLTYIKDRAWVKILLATALMGIL YLAAQGMIYYIQFVIRVQEEEYNKKVRARLATHYFRDGQNHQVPAVQNRMTNDLEMIRKN YFDWYPIVPFYGSMFVAALVALLTINWSIFLTSVVIDIVSYFVPKLVQKKMEQATNNVSE QNKHYLDVLAKWFSGLEELRRYFAGAKLFQVGEKTSSKVEQAHVKQTAAQQQLIILNGIC NMVGQIILLSLTAFLITKNLVIFGAIMSVQNFAANISIGLQQTIQALSFMKSSQDLMKQV DGDATVIEKVKAGQEETPVAFSTKDLALQYPNGEKLTFPDIAVKPGEKILLTGDSGAGKS TLFKLILGELKPSTGKIEFQNSQGLTIKPNMSRIGYIPQEPNLFPGTIKENITMFNKQLN NQVAQVLDEVNFAADIKKFKAGVDEKIDLDNLNISGGQRQKIVLARSKIHDSDIILIDEG TSAIDQTATMDILQKLLKSKTTIVFIAHNFNKQMQEMFDREIHLIKE >gi|256541451|gb|ACPV01000023.1| GENE 2 1783 - 3096 1384 437 aa, chain + ## HITS:1 COG:SA2109 KEGG:ns NR:ns ## COG: SA2109 COG1113 # Protein_GI_number: 15927896 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 1 435 17 451 459 447 57.0 1e-125 MISLGGAIGVGLFMGSTSTIKWTGPSVLLAYMFVGLILYIVMRALGEMLYINPGTGSFAD YATEYVHPLAGYLAMWANVFEYIVVGMSEVVAATEYLKYWWPNISALWSGIIIIAFLLLA NLASAKAYASLEFWFAMIKVITIILMIILGFIVIFFGVGNGGHPTGFSNLWSHGGFFTGG IKGFFFSMSIIVGSYEGIELLGISAGEVANPQEAIVKSVKSVLFRILIFYVGAIFVIVTI YPWDKLDSLGSPFVTTFAKVGITAAASIINFVVLTAALSGANSGIYSSSRMLFKLSHDHE APGIFKHISKRIVPDRAIMGISAGIFIGFVLNVIASQFNHSASDLFVIVFSSSVLPGMIP WFVILLAELRFRRHNKEAIQDHPFKLPLYPFSNYFAFAMLIMIVIFMFLNPDTRISVIAG ALVLIVATIVYLVRHKN >gi|256541451|gb|ACPV01000023.1| GENE 3 3230 - 4186 1071 318 aa, chain + ## HITS:1 COG:lin1988 KEGG:ns NR:ns ## COG: lin1988 COG0207 # Protein_GI_number: 16801054 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Listeria innocua # 8 318 4 314 314 424 62.0 1e-118 MAILEQPYLDLLEKIMTEGHDKDDRTGTGTRSYFGAQMRFDLTQGFPLLTTKKVPFGLIK SELLWFLRGDTNIRFLLEHNNHIWDEWAFKNWVQSPEYQGPDMTNFGLRSQSDPEFNQVY QAEMKKFDQRILDDPAFAQKYGNLGDVYGAQWRHWEKRTGGFIDQIADVIKQIKETPDSR RMIVTAWNPEDVPTSALPPCHVMFQFYVVDGKISVQLYQRSGDMFLGVPFNIASYSLLLN MIARETGLKVGEFVHTLGDAHIYRNHFSQVKELLSRTPYDSPELWLNPEKKHIEDFEMKD IKVLNYQHHGTIKAPVAV >gi|256541451|gb|ACPV01000023.1| GENE 4 4196 - 4705 323 169 aa, chain + ## HITS:1 COG:lin1987 KEGG:ns NR:ns ## COG: lin1987 COG0262 # Protein_GI_number: 16801053 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Listeria innocua # 1 166 1 159 160 138 44.0 4e-33 MLSFVWAEDQQHGIGIDGHLPWHLPADLKHFKEKTIGHPIIMGRKTFASLPHLLPERKHI VLTHRQELKQKYAGNEQVKIVSTLAELNEYLRQHQTEEICAIGGVSIFRALLDQVDLLEK TEIKANFKTDTVMPAINYDDFELVSREEHHHDEKNKYDYTFLTYHRKNK >gi|256541451|gb|ACPV01000023.1| GENE 5 4791 - 7193 1891 800 aa, chain + ## HITS:1 COG:L168650 KEGG:ns NR:ns ## COG: L168650 COG0474 # Protein_GI_number: 15672557 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 6 766 3 770 775 720 50.0 0 MTDKQITGLTQAEVDPRIQNGQVNQAIDDQSKTATQIIRENVFTYFNLIFAILAVLLVFV GAWNDLTFLPVIVLNTIIGIVQELRAKKVLSKLNVMNATEIIAVRDGQEEKIPIEKLVQD DVVLLQTGDQIPADARVISGELRVNEALLTGESDEITKTKDAELMSGSFVVSGKAYAVLE KVGKDSYISKLTIEAKAMGSVEQSEMVRSINRLVKWVGIIIIPVGIALFSQSFFLNNIGL KRSITSMEAALIGMIPEGLYLLTTIALALAAMRLARQEVMLHDMKSVETLARVNVLCVDK TGTITEPKMAVEKAVSSKNFTGDLSSIIADFAKNMPADNATMKAIQAYFKDGTKTADSIL PFTSVNKYSGVIFGNQTTLIGAPEMVLRDQFAQYQTEFEKYAAEGYRVLIAANYPGVLTE DNSALKENVQVLGYILLSNPIRKEAKSTFQYFNQQGVDIKVISGDNQVTVARVAKQAGIN GADKYIDAQTIKDGEYEQAVQNYNVFGRVKPDQKRKFVVALQNQGNTVAMTGDGVNDILA MKKADCSIAMASGNSAAVQASQVVLLDSNFAKMPLVVNQGRQVVNNIQRSASLFLVKNIF SFLMAIFSLIMTINYPLQPAQITLISAFTIGLPSFLLALESNHKRIRGKFMPNVLARAIP GGLTDWLAVAILVIAGASISLDHGQVGTTATMLLVLVGFMVMYHISAPINKFRLAVMGLS VICIIGSTIFFPRLFSLTMLNNKSLFILAVLFCAAVTIFRWLSKILDGIAEVLVVFDQKG KNMTFVEFKEAYDRGKNNVK >gi|256541451|gb|ACPV01000023.1| GENE 6 7235 - 8176 927 313 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00957 NR:ns ## KEGG: LCRIS_00957 # Name: not_defined # Def: DNA-entry nuclease # Organism: L.crispatus # Pathway: not_defined # 1 313 1 313 313 573 99.0 1e-162 MKKNRFRSFALSLAAAIGFISFANTNVPCNNQTVYAVSDKALVNLKYHNKQIVTVDHDQP QFSKSTLSKKKGPWQKYSQLDYLNRAHAANALLNKRLMPHSQRAALTWNPTGWHNKRIAS GWLYNRCHLIGYQLTGQNNNPRNLITGTRELNDPDMLKYENEVAEYLRSSSKNYVRYRVT PIFKGNDLLANGVEMEAEATSKNGPRFNVYIFNEQPGMLLNYKTGTSKVKHGSSTIAEHV KSRKRSTSRVTKKRTIHHIKGTVSTAEHRVVGNRRSKIYHVMNGQNYHMSSANAVYFNSE AAAQAAGYRKSLR >gi|256541451|gb|ACPV01000023.1| GENE 7 8595 - 9449 858 284 aa, chain + ## HITS:1 COG:L118475 KEGG:ns NR:ns ## COG: L118475 COG1464 # Protein_GI_number: 15672301 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Lactococcus lactis # 38 284 38 286 286 270 59.0 2e-72 MRKRRRINTIIWTIIGILIVIAGWFSFGPGIPSQNQTKTVTVGIVGESKAEAAIWKSIAK TAKEKYGITLKTKNFTDYNQPNKALKSGDIDMNAFQHYAFLKDWNKANHGGVVAIGRTYI APIRLYSRKYHKLSDLPDGATIAVPNDATNESRALFVLKNAGLIKLKKGKTLVTVADITS NPNNYKIKEIGAEQTGRVLNSVDASVVNNDYAGPAGLTDKQTIYIEPINKDSKQWINILC VKQGKQKDKLYQDVVKAYQTAETKKLTKEYYGNTQIAAWDVKLK >gi|256541451|gb|ACPV01000023.1| GENE 8 9462 - 10526 1186 354 aa, chain + ## HITS:1 COG:SPy0320 KEGG:ns NR:ns ## COG: SPy0320 COG1135 # Protein_GI_number: 15674484 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Streptococcus pyogenes M1 GAS # 2 323 4 328 354 301 51.0 1e-81 MSIVELKNVEVAFPQKKGERVKAVNNVSLSIEKGDIYGIVGFSGAGKSTLVRTVNLLQKP TAGSITVDGTEFLKDGKQVISNKELQLKRRNIGMIFQGFNLLNETTVLENVAFALKHEKL SDEELEKRSLELLDLVDLKDKADFYPAELSGGQQQRVAIARALANNPDILISDEATSALD PQNTQQILDLLKRLNKKFHLTVILITHEMDAVKKIATKVAVMEHGNVIEDGSLRDVFLHP KQDLTKKFVGGSLEAISTLNSLALDKLGKNEAIYQLVYSVANVTKSIIIELYKQIGVEVS MLYGNVELLNEEPIGTLVVLVKGDPAKQKQTQEFLAKQNVTFTRLDEKGNVYHD >gi|256541451|gb|ACPV01000023.1| GENE 9 10519 - 11202 885 227 aa, chain + ## HITS:1 COG:L122401 KEGG:ns NR:ns ## COG: L122401 COG2011 # Protein_GI_number: 15672305 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Lactococcus lactis # 1 225 1 231 231 232 62.0 4e-61 MISFLSKYLPNVVQLGWGTSIFQTLFMTFWSAIFGGILGIIFGVILVLTKDGGIRPNKFW YNFSDKLVSIFRAIPFIILLAFVAPVTQKIVGTQIGMKAALVPLTLGVFPFYARQVQVAL ESVDPGKVEAAESLGSTARDIVFDVYLRESRSELIRVSTVTIISLIGLTAMAGAVGAGGL GNTAISYGYNRFNNDVTLVATVLVIILIFIVQIIGDFFAKRMNHQSR >gi|256541451|gb|ACPV01000023.1| GENE 10 11333 - 12736 1968 467 aa, chain + ## HITS:1 COG:lin2328 KEGG:ns NR:ns ## COG: lin2328 COG0114 # Protein_GI_number: 16801392 # Func_class: C Energy production and conversion # Function: Fumarase # Organism: Listeria innocua # 7 460 3 455 455 447 52.0 1e-125 MSEEEYRVESDTIGPVKIPKNALWGPQTERSRNNFPSGELMPLQIIRAFLHLKKAAAESN VEVGDEPKEKGEAIEDAIDHLLALSDTDLRKDFPLHVLQTGSGTQSNMNVNEVVANLANK LHPGLDILPNDDVNRGQSSNDTYPTAMNIVAVEALDKLEPAIQHLIDELVVKEKKYWKTV KVGRTHLQDATPLTFGQELSGYISALKHDLSYIRELKPTLYELAIGGTAVGTGLNAAPGM TEKIAGKLSEVYGHKFEVKTNKFWGLAHHSGLDVVHGALKTLAADMFKIAQDIRLLASGP RAGYHELNIPANEPGSSIMPGKVNPTQAEAVTMAAAKVFGNDTTITFASSQGNFEMNVFK TVIIASFLDSCDILTGTITGFADKMIHGLTVNEERMDELLENSLMTVTALSPHIGYHAAA KIAQTADKEGTTLREAALKSGKVTEEQYDEWMDYMQMTNVDQSTPEE >gi|256541451|gb|ACPV01000023.1| GENE 11 12748 - 14124 1713 458 aa, chain + ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 6 455 57 504 506 427 53.0 1e-119 MPNIKELKNKYDAIIVGSGGTGLTAALQARELGLNVVILEKNEKTGGNTSRASSGMNASE SLVQLDEGIIDNNRDFYEETLKGGGLLNDRAMLKYFVNHSALAISWLMKYGVNLTDLTIT GGMSKKRAHRPGSMEPVGFYLTSRLTTQVKKAGVDIFTGAKVSKLLQDKSGKINGVEVET GDGVKTIKAKSVLLATGGFGASKDIIKKYRPDLVDYKTTNQPGATGDGLKLAENIGAQLM QMNFIQVHPTADTDNPHVYLIGEGLRGEGAILVNKAGERFVNELSTRKIVSNAITDLHED GAYLIFDSGVRAHFAAVEFYDHIGLVEHGDSLADLAEKIGVNADNLNETINHWNKAVETG KDKKFGRTTGIDRQLDRGPYFAIHIHPAVHYTMGGIHIDTNTEVLDTNGNVINGLYAAGE VSGGLHGNNRIGGNSIAETVIFGRQAGIQMTKYVRENK >gi|256541451|gb|ACPV01000023.1| GENE 12 14334 - 15263 1230 309 aa, chain + ## HITS:1 COG:lin0242 KEGG:ns NR:ns ## COG: lin0242 COG0039 # Protein_GI_number: 16799319 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 3 304 5 305 313 273 47.0 3e-73 MSRKVFLVGDGAVGSTFANDLLQNTIVDELAIFDVAKDRPVGDSMDLEDITPFMGQTNIH PAADYSDAKDADVCVITAGVPRKPGETRLDLVNKNVKILESIVKPVVESGFNGVFVVSAN PVDILTTLTQKLSGFPKNRVIGTGTSLDSMRLRVELSKRLNVPVAKVNSMVLGEHGDTSF ENFDESTVAGKALRDYSEINDDVLAEIETDVRKKGGKIIANKGATFYGVAMMLTQIVSAI LDNRAICLPLSAPINGEYGIKHDLYLGTPTVINGEGIEKVIETKLSDTEHAKMINSADKM QEVLSGINL >gi|256541451|gb|ACPV01000023.1| GENE 13 15402 - 16718 1576 438 aa, chain + ## HITS:1 COG:TP0112 KEGG:ns NR:ns ## COG: TP0112 COG3579 # Protein_GI_number: 15639106 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Treponema pallidum # 4 437 3 439 450 322 38.0 6e-88 MTVISQQEIEGFSESFNSNPENKVASRAARRSGLLEASFNDRVSERLNHVFSTELDIGGV TDQKHSGRCWEFTTLNVLRHYFGKENKVKDFTFSQAYNFFWDKIERANAFYNAIIRLADK PLTDRHVQAWLEFAGEDGGLWTMAINLVKKYGVVPSYAMPESFNTNNTTALAENLARKER KDALVLRKLVNEGKRDEAEKTKKEFLNEIYRMVSVALGEPPKKFDLEYRDDDKKYHLERD LTPQAFVQKYFKDFNFDDYVALSNIPNHEYNKVYHLPLYDNVAGGDQVKYLNVPIEYLAQ AAVAQLKSGEAVSFGNDVLKQMERKTGFLDTELYKTDQLFDVDTQMSKADRLNTGEGFAT HDMTLVGVDEDNGHIRKWKVENSWGDKFGHKGFYEMSQAWFEQYVYDVIVKKEFLPKELQ ELVDQPAVDVMPWENFGE >gi|256541451|gb|ACPV01000023.1| GENE 14 16971 - 17669 837 232 aa, chain + ## HITS:1 COG:RSp0944 KEGG:ns NR:ns ## COG: RSp0944 COG0684 # Protein_GI_number: 17549165 # Func_class: H Coenzyme transport and metabolism # Function: Demethylmenaquinone methyltransferase # Organism: Ralstonia solanacearum # 26 215 28 216 224 140 39.0 3e-33 MPVGKRIYLKRQMPDPKVVAGFKKIPASNTADCMERNCAMNPRIKLMSNPDEEMVGPAFT VHTRAGDNLAIYAALKYCQPGDVIVIDDEGDNTRSLIGEVMMSYLRDQKKIAGIVIGGPI RDIDNLRNWKLPIYATSTTPGGPYKEGPGEINVPVACGNVSVNPGDVILGDADGVICIPR KDAPEILPKAQAFHEQDEAKAIAFSKGEVDLSWVDKSLADKGFDIIDDVYRP >gi|256541451|gb|ACPV01000023.1| GENE 15 17686 - 19155 1559 489 aa, chain + ## HITS:1 COG:SA2486 KEGG:ns NR:ns ## COG: SA2486 COG0471 # Protein_GI_number: 15928280 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 7 489 5 472 472 414 47.0 1e-115 MKTLEKVNYKGFIWPLIVGIVLWCITPWRPSGLSVQAWQMFAVFVATIVGCITKPLPIGG TTLAGLVVTVLVGLAPMKDVTNAKGMVVNQGVLSSFGNSAAWLIAMAFIMAHGISKTGLG NRIAYIMIQKFGKKSLGIGYAITGLELILGALIPSNSARTGGVVWPVVESVSKEGYDSKP DDASRKKIGAYIDFTAFHANILSTALFITGAAPNMVAQQLAAQKGYQMSWAGWFFTAIVP VAVLAVIIPFVIYKMYPPEIKETPDAKKWADEKLAKMGPMSTPEKIMMSVFILSIVLWVL SGFFKIPQLDATFVAFLAVTILMITGVLTMQDALKETGAWNILIWLSILMFMAGKLISYG FIDWFSKLVQNSLHGVSWGFVLAILVLLLFYTHYFFASGTAHMTALYLPFLSVAVATGAP LGLSAMLLAFTGAINASTTHYANGPASILATTGYVKQGEWWKMNFVLGLIYMIIFGTVGV LWMKIIGLW >gi|256541451|gb|ACPV01000023.1| GENE 16 19237 - 20028 686 263 aa, chain + ## HITS:1 COG:L34494 KEGG:ns NR:ns ## COG: L34494 COG0596 # Protein_GI_number: 15672802 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Lactococcus lactis # 3 262 4 265 267 106 32.0 6e-23 MKFKTNDDVILHYTDTGDEDKPALIGIPGIGGSCQMWQDLIALFKNDYRFIMLDPRNQGQ SERTYRGQRISRHAVDLEELLVKLNLHDVVAIGNSMGAANIWAYLSIYGKGRLKAMVDLD QSPKMIADKSWKYGFKDLTWDNYPDMLKFDFGKACYHHIDEKMFLAAKKEYQEFPYDPAE NYNCLVEHAEQDWRDMILDTPVPMLVIAGEKSPFFNPEFTQAIKMLNQDVQTAIVPECGH LPQAEQPEKTHEIIAEFLKNLKN >gi|256541451|gb|ACPV01000023.1| GENE 17 20109 - 21164 905 351 aa, chain + ## HITS:1 COG:L0038 KEGG:ns NR:ns ## COG: L0038 COG3053 # Protein_GI_number: 15673170 # Func_class: C Energy production and conversion # Function: Citrate lyase synthetase # Organism: Lactococcus lactis # 15 351 5 346 346 302 46.0 5e-82 MDKVVDLFLNDATTRQKWENLLESLGLNDFSEREVNVIDHTIGLEDEEGNLVGTGSVAGN VLKYIGVKNDADTQGARFNKVVTALTQYLTNDGIFHSFVFTKAKYATSFEHLHFNLLAKT DQAAFLENGTPDVKEFVAEVPEIADQEHKKVAAIVMNANPFTLGHQHLIKMASEENDLVY VFVVANDVSLFSFDERFKLVQEGTKEFSNVKVISGGDYMVSPATFPAYFLKSPDDLIAVQ TVIDAAVFKNQIAPGLNITRRYIGKEPISRTTHFYNVSLAHELGPEIEVIVIDRLEKDGQ IVTATKVRQLIKDGNLKEINKFVPETTYEFIKQNMQKLQSKIEKGMNIDGN >gi|256541451|gb|ACPV01000023.1| GENE 18 21154 - 21447 454 97 aa, chain + ## HITS:1 COG:L0039 KEGG:ns NR:ns ## COG: L0039 COG3052 # Protein_GI_number: 15673171 # Func_class: C Energy production and conversion # Function: Citrate lyase, gamma subunit # Organism: Lactococcus lactis # 1 90 1 90 96 91 60.0 4e-19 MEIKTTAVAGTLESSDIQIMISKGSNGIEIDLESEVKKAYGDQIEKVITDTLKAYGLENA KVKATDKGALDCVIKARTLAAAQRATETSDKPDLEVL >gi|256541451|gb|ACPV01000023.1| GENE 19 21448 - 22362 1210 304 aa, chain + ## HITS:1 COG:L0040 KEGG:ns NR:ns ## COG: L0040 COG2301 # Protein_GI_number: 15673172 # Func_class: G Carbohydrate transport and metabolism # Function: Citrate lyase beta subunit # Organism: Lactococcus lactis # 4 302 3 302 304 359 65.0 3e-99 MPYVKNRLRRTMMFVPGNNPAMIKDAGIYGADSIMLDLEDSVSLTEKDAARMLVYEAIKT VDFGGSEIVVRVNGQDTPFYDEDVKAMVKAGVDVIRLPKTESAAMIQKLVKDIEHWEDEF DIENGSIGVMAAIESAKGVLNAPEIATATPLMMGLAVSGEDYTADMHTHRYPDGRELEFA RNMVLQAARAADVYAFDTVFSNMKDTEGFYRETNYIHELGYDGKSLVNPRQIQMVNKVFN PTKEEIEQAKNVENAIREAKAKGSGVISLNGKMIDKPVVEKATRVLETAKASNLIDKEGN YIGE >gi|256541451|gb|ACPV01000023.1| GENE 20 22400 - 23893 1699 497 aa, chain + ## HITS:1 COG:L0041 KEGG:ns NR:ns ## COG: L0041 COG3051 # Protein_GI_number: 15673173 # Func_class: C Energy production and conversion # Function: Citrate lyase, alpha subunit # Organism: Lactococcus lactis # 4 497 20 512 512 693 71.0 0 MNLKPFETTEIGHPEVKRVAPKVRVTTGQNKIIDSLDEVIKNNLKDGMTISFHHHFRNGD YVFNLVMDKIISMGYQDLTLAPSSLTGVMNDKVIEAIKKGVITNITSSGMRGSLGDFVSH GGLKNPVIFRSHGNRARSIEEGEIKVDVAFLGVPVSDPAGNANGQDGDAVFGSLGYALMD ARYANKVVLLTDNIVDYPNTPASIQQDQVDYVVKIDKVGDPDKIGSGATRFTKDPKELKI AQMVNQVIINSPYYKQGFSFQTGSGGAALAVTRYLRQSMIDDGITASFALGGITKPTTDL LEEGLVRKVMDVQDFDKGAAQSMANNKNQQEIDASWYADPHNKGAVVNNLDVSILSALQI DTDFNVNVMTGSDGVIRGAVGGHQDSAAGAKMTIITAPLVRGRNATVVPRVETIVTPGSS IDVLVTERGIAINPARQDLVDAFSKVPGLKILDINELQKMAEKQVGVPKPLEYTDRTVAL VEYRDGTIIDTIKEVRD >gi|256541451|gb|ACPV01000023.1| GENE 21 24310 - 24765 704 151 aa, chain + ## HITS:1 COG:lin1603 KEGG:ns NR:ns ## COG: lin1603 COG2707 # Protein_GI_number: 16800671 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 2 146 4 148 153 125 62.0 3e-29 MESWLFLALVLVVALLGKNMSLIIATGVVMVFKLLPFTSKWLPTIQAKGINWGVTIISVA ILVPIATGQIGFKDLIKTFKSPAGWIAILAGIAVAILSRYGVDQLAAVPQVTVALVLGTI IGVVVFKGVAAGPVIASGMTYLVITLFNLHF >gi|256541451|gb|ACPV01000023.1| GENE 22 24795 - 24956 81 53 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00973 NR:ns ## KEGG: LCRIS_00973 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 53 1 53 53 67 96.0 1e-10 MIIVHENTQERLDDYLEHRLHNYEIITPPIPKKPEIVTQDDHKQKNRKPKRDH >gi|256541451|gb|ACPV01000023.1| GENE 23 24974 - 25807 751 277 aa, chain - ## HITS:1 COG:SA2475 KEGG:ns NR:ns ## COG: SA2475 COG0619 # Protein_GI_number: 15928269 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Staphylococcus aureus N315 # 3 276 2 276 277 297 58.0 1e-80 MHNESQVLGYQPGDSFIYQLNATTKLVFMLLVSVACMVTYDTRFLIAICILSIFLFKEAK IKWSQISFIVKFIVVFMLLNLIFVFIFQPSYGENIYHSKSILIHAGYFTLTLQEVFYLFN LFLKYVCSIPIVLLFLLTTNPSQFAASLNKIGISYKISYAVSLALRYIPDIQNSYWDISA AQQARGNELSKKASLGKRIKGTLNIVMPLIFSSLDRIDTISTAMQLRRFGSKKKRTWYVT QSFKKADYLVMIAAVILVLIVVGLWQLDHGRFYNPFI >gi|256541451|gb|ACPV01000023.1| GENE 24 25800 - 27509 1605 569 aa, chain - ## HITS:1 COG:SP0483 KEGG:ns NR:ns ## COG: SP0483 COG1122 # Protein_GI_number: 15900398 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 1 553 1 545 560 568 54.0 1e-162 MPKTIIEFKDFSFKYDSQAEPTLKQINLTIKQGEKLLIAGPSGSGKSTIGRCINGLIPNL DTGEITGECTINGKNIKDTNLFDLSFTTSTILQDTDSQFIGLTVGEDIAFALENDCQPQN HMKQVVHRWADELGIEHLLKQAPQNLSGGQKQIVALAGVMVDESPILLFDEPLANLTPAS GMKTMALIDRIQKELNATVIIIEHRLEEVLSQPIDRIILINDGEIIADKKPNDLLHENCL EDVGVRSPLYLNALKKANVDLTHIPDLTSVAALPQDPEIAKQLQEWQNNITLSGEKEETH PLLELKGVGHRYSKLQIHPLHDVTATINQGDFVSIVGQNGAGKTTLCRIICGFIDNEGLI LFDGDNLKQFSIKERSDKIGYVMQDPNQMISQKMIFDEVALGLRLRGYDEQTIRTKVYDT LKVCGLYPYRNWPISALSFGQKKRVTIAAILVLNPELLILDEPTAGQDWQTYTEIMNFLK QLNDQGKTIMIITHDMYLLMEYTNRSLAFADGTLIADTDPIKLLTEKALIKKAALKRTSL YNLAIKYQLENPDSFVRAYIDAERDEKHA >gi|256541451|gb|ACPV01000023.1| GENE 25 27513 - 28070 604 185 aa, chain - ## HITS:1 COG:L123147 KEGG:ns NR:ns ## COG: L123147 COG4720 # Protein_GI_number: 15672306 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 4 184 2 182 182 186 55.0 3e-47 MHTKGLSVKNVVAIGIGSAIYVILARFTSIPTPIPNTNIELVFPFLALFASIYGAKVGFI VGFIGHALSDFIMYGQTWWSWVLATAVLGWIIGLAAKRLDLKNGIFGIKQIIFFNIIQII ANILAWIVVAPIGDIIIYSEPANKVFVQGISATLSNGITIMVIGTLLLKAYAGTKIKKGS LRKED >gi|256541451|gb|ACPV01000023.1| GENE 26 28228 - 28608 610 126 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00977 NR:ns ## KEGG: LCRIS_00977 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 126 1 126 126 236 100.0 2e-61 MKQDELKKINHEIGSYVAKVTKTIWVDDRTLQIATMMIDSYGDTVYVWVEEADDHCRVSD GGRILFKLDPNEEDKELYETAEDIALGSGYEFDEKHCEIFVDVDRKNVAQAAMKLAQLQV AISYLG >gi|256541451|gb|ACPV01000023.1| GENE 27 28908 - 29234 319 108 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00978 NR:ns ## KEGG: LCRIS_00978 # Name: not_defined # Def: transporter protein # Organism: L.crispatus # Pathway: not_defined # 1 108 1 108 108 171 99.0 7e-42 MKKSKYDLWIGALNLINCVLFISSWFAILGADFTARIALIFYLFAWFGVILNAVAVVQSH NMNISLIGPILGVIGNALYGFTAALALPAVIVNIISAFFIFMQHSNKK >gi|256541451|gb|ACPV01000023.1| GENE 28 29282 - 30220 722 312 aa, chain - ## HITS:1 COG:L0037 KEGG:ns NR:ns ## COG: L0037 COG2390 # Protein_GI_number: 15673169 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Lactococcus lactis # 7 311 5 309 309 198 36.0 1e-50 MAQLTDEQLANIAHDFYLSQLNIADISQKYDLSRYLIAKALEDARNRGIVKIKISRGIKR NQVLEREFQKRFRLKEAFIVETTGNRDENSEAVVNFAAKQIETYLKQAKIAGISWGATMH GVINDFFEQDLEQLYFIQLLGQPINSNRRKNPLAQDAAEKLHSHSLSLPTPLYILNPKIM PALKHEPYFKVIENCYHHLDMLFTGLSTFQSFQANQFLKENYGPELFKDIPDCDVAGMIM GRPYNIKGEFFPDFEQHICGISMNDIMKTPIRFCVVRNRFKSEALLGALRSGIITHLVTN DAIAQRVLQNID >gi|256541451|gb|ACPV01000023.1| GENE 29 30384 - 31730 1212 448 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00980 NR:ns ## KEGG: LCRIS_00980 # Name: not_defined # Def: membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 448 1 448 448 847 99.0 0 MSEIDREHHLSEKHHMKILWEEFFKSDNNTMAQDATLVEKTSIVGRVGIMLLSCGTGAWR VRDSMDTVARTLGITCSTDIGLVSIEYTCFDVDNESYSQTLSLPATGVNMTKLNEMEKFV RQFEKGHGEWTIGQIHKRLREISQQKSAYSPLISGLSSGLACGGFIFLLGGGLPEVICAF LGAACGQYIRAIMGKHRLTLVAKIAVAVAIACSVYFMSFHVGEILFHINHDHAYGYIGAM LFVIPGFPFITSGLDMSKLDMRSGLERLTYAILIIVIATMAGWAVATILRLHPGSMPKLK IDPETLTCLRLLASFCGVFGFSIMFNSRPQMAATAAVMGAMANTLRLSLVDYAQVAPALA AFIGALTAGLLASIVRKKVGFPRIAITVPSIVIMVPGLYMYRAVFNFGITNINIGAYWIV EALMIVVALPLGLLAARILTDKKWRHAD >gi|256541451|gb|ACPV01000023.1| GENE 30 31794 - 32033 163 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227879052|ref|ZP_03996942.1| ## NR: gi|227879052|ref|ZP_03996942.1| hypothetical protein HMPREF0506_1943 [Lactobacillus crispatus JV-V01] # 1 79 1 79 79 91 100.0 1e-17 MQRQKQHKDGIIPPHGTAINNIPNSTTKTRTTNNIVKSYNNISSKLPQTSQNNSNLSLIG LALATLGLLGFTITKRKHD >gi|256541451|gb|ACPV01000023.1| GENE 31 32069 - 33559 1229 496 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1655 NR:ns ## KEGG: LGAS_1655 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 133 354 714 920 1425 81 30.0 6e-14 MGQKSFNGSDDGKVYPEKNNISEEDINQLKLNDDSHLLQWGIYFNYGNQLNNPPLSLYNA IFKVAFSQDQTLIPSSIKVFEIPSGMSVDQNALRHGIKDFYDGADKSDENYYSIIATGNN EKTKFADFLRAHLVKNATGQATGFSVNQTGQKFNPNDPSYDYSTHAYFIQLDTVLSNKSG QPTSSTGMTSDTSKNTLAGQGLSADYKNKDDQSANTPIQFSRLEEALALFKNKHYKIEKV SGANATLKTDSSIGFGNFYNNENVDQHFIIYLVHETQIEKQTATVGEEVKGYYVNGPKSQ NFSGINNPDVAVPKNDETPTPNVVKEVIYSRSRVVDLVKDPQGTETNWSQWISNNQAFSA IPYNNTTIKDIIDGHYHLDKNGVIHIASSQNKLTATSNSITEISAIAPNSEFLASIASTT VNGQKTTTGNLATISIWVPYSYSASKPEPTPTPIPIPESETPTTPEQPKQPSEPNTPYES EPPKSMNTNRQRFTKK >gi|256541451|gb|ACPV01000023.1| GENE 32 33764 - 34372 510 202 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1655 NR:ns ## KEGG: LGAS_1655 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 178 9 180 1425 69 33.0 6e-11 MKHKNDLSFNAKFNGKQKFGFRKLSVGLAAVALSTTFFLSNSQLVHADTNTATNEEQTQQ DSQKSNQEQSNNTIQSTQADPSNQNNQSSTKNSPNQEKTKQQTVEITAFYTDEKGNNASE IKKDESASLMAGQDTINVDIKINQPKLDQNNSLTINLPDTGESKNYQINTGKTKIFSNNA GSQSYWDITAVDHNDNSQLVAV >gi|256541451|gb|ACPV01000023.1| GENE 33 34603 - 34791 75 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MISNHVILNLLLFFCFIYLAIANAVTTKAAIMATTKPTIPNNKFIFVIFFYVIVIFCMRY II >gi|256541451|gb|ACPV01000023.1| GENE 34 34838 - 35347 628 169 aa, chain - ## HITS:1 COG:L115671 KEGG:ns NR:ns ## COG: L115671 COG2606 # Protein_GI_number: 15672298 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 6 169 2 158 158 147 49.0 1e-35 MSKKKNKKNKLEKTLVEKILDQNKIKYRQAQFAVSEDKGGVAQMNTSILEDKERLVYKTL VCEGNKTGPLVGVVPVTEHLSMKKLAKVSGNKKCEMLPLKKLAKTTGYVHGANTPIGIYF KEKFPIYLDDSMQGNPEIGVSSGEVGRSVFLNPEDLAKFCHAPFVDLKE >gi|256541451|gb|ACPV01000023.1| GENE 35 35408 - 36352 1607 314 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879056|ref|ZP_03996946.1| ribosomal protein L11 methyltransferase [Lactobacillus crispatus JV-V01] # 1 314 1 314 314 623 99 1e-178 MKLLIIKIDTSHEVEDALSVFALDNLNALGIESRKRSDFEQAGWLHDSTVVEMDDIKDLP KDTYFYAYFDEEADKDALVKKFQDKLKELKSYGLDVGDAKITTSYIKDQDWNTAWQKYYH VIDFSRHLAIVPEWEDYKPAFKDQQLIKLDPGLAFGTGNHKTTQLAMMGLERAMVKPMNV VDVGTGSGILAIAASKLGATDVLATDISDESMTAAKQNAALNDINNIHTQKTSLLADVKG KFDIIVANILAEILLDLIPQMDSHLNDDGQVIFSGIDYLQLPKIEKALDENGFKVDLTIR QGRWMGLAITRKEK >gi|256541451|gb|ACPV01000023.1| GENE 36 36408 - 36641 147 77 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00983 NR:ns ## KEGG: LCRIS_00983 # Name: not_defined # Def: uncharacterized conserved secreted or membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 77 1 77 120 120 100.0 2e-26 MKKLGNKIEAIPIVRKLNSHRWMSLVWWSILVMILPYIFSICRVPVVWREAILFFIINSI IAYHLGNLIIKLNLSKW >gi|256541451|gb|ACPV01000023.1| GENE 37 36785 - 39025 2601 746 aa, chain + ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 1 746 1 738 738 830 54.0 0 MSKYIEMTHDQVIDTCKKYMNDDQVAFVEKAYEFANKAHAGQKRASGQPYIIHPTQVAGT LATLGLDPDTVAAGFLHDTVEDTPVTNDELKEKFGEDVAFIVDGVTKLNKYEYKSHQEFL AENHRKMLIAMAQDLRVIMVKLADRLHNMHTLQHLRPDKQRRIASETMDIYAPLADRLGI GTIKWELEDMSFHYLNPEAYYRIVNLMDVKRSQREKYIADTIKTLKKTLNELGIKYEIYG RPKHIYSIYKKMVNKHKDFDEIYDLLAVRVIVKNVRDCYAVLGAVHTEWKPMPGRFKDYI AMPKVNGYQSLHTTIIGPGGRPLEIQIRTEQMHKVAEYGVAAHWAYKRGNFTGVEQSTSG EKLDMVREILELKDETKDAGEFMKSVKSDIFSDRVYVFTPKGEVYELPKGSVTLDFAYAI HTQVGSHAVGAKVNNKLVPLDYKLRNGDVIEIMTQTNAAPSRDWVDMVKTSRARNKIRRY FRSQDREDSIQHGEQLIADMLRDEDLSPKEFMARDRIEKLLEHFNYHTADELYAAVGFGD LSAQAVVNRLTVDLRREEENQKQKELEEKILNSGQQAVQEEQPKKNSNTTMKVKHKNGVM IQGVSDLMLHLAKCCNPVPGDKIIGYVTKGRGVTIHRTDCRNITKEAEEQGRLIDVEWEN VEENSVQSFNANIEVFGYNRSNLLSDVINKLNSLTKNINNISGKVNEDNVAHMYVTVAVR NADQLDEILSKLRDIPDVYETKRSDN >gi|256541451|gb|ACPV01000023.1| GENE 38 39025 - 39462 389 145 aa, chain + ## HITS:1 COG:BH1243 KEGG:ns NR:ns ## COG: BH1243 COG1490 # Protein_GI_number: 15613806 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Bacillus halodurans # 1 144 1 144 146 146 52.0 1e-35 MRVVIQRVNHAQVDIDGKTVGKIGKGFLLLVGIKNGDELPVIKKAADKIAKMRIFEDEEG KTNLSLKDVNGEILSVSQFTLMANTKKGNRPSFVDAMRPPRSKELGEDFNQELENDGFHV ETGEFGADMQVSLENDGPFTIVLDL >gi|256541451|gb|ACPV01000023.1| GENE 39 39758 - 41044 1454 428 aa, chain + ## HITS:1 COG:SP2121 KEGG:ns NR:ns ## COG: SP2121 COG0124 # Protein_GI_number: 15901936 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 426 1 424 429 452 53.0 1e-127 MRVQKPKGTVDILPDQSGSWQKVEETARNFFNRANYREIRTPSFENYEIFARSSGDSSEI VEKQMYDFDDKGGRHIALRPEGTASVVRAYVEDKMYAPEVVKPFNVFYMESTFRYERPQA GRQREFHQIGVESFGSSNPLSDVQTIMMGHDLLGELGVKNYQLHINTLGNEQVRQDYHDA LVNYFTPLKDELSEDSQRRLRDNPLRILDSKDERDKKFLPKAPKIREFLDDDSKANFEAI LKMLDQLGIDYVIDDDLVRGLDYYTGIIFEFMVEDKSLWESATTILGGGRYDHLVEEFNG PATPAVGFGIGEERLMLVLKKQNPALFEKRGIDFFITNIGDGTAQKAIEIARSLRNQGFE ADFDVNQKKLKNQFKKADREGAKYVITLGEKELANGVLNIKRLADGKTIDLSLEDLNNMT KIMDELKD >gi|256541451|gb|ACPV01000023.1| GENE 40 41050 - 42903 2290 617 aa, chain + ## HITS:1 COG:BS_aspS KEGG:ns NR:ns ## COG: BS_aspS COG0173 # Protein_GI_number: 16079809 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Bacillus subtilis # 7 592 4 592 592 662 54.0 0 MEKIEKRTDYCGNITEKYIGQDVNLYGWVQRVRNLGNLVFIDLRDREGLVQIVVNKDSGK KLMDIADSLGNEYVVQVKGKVVKRSEVNPDMKTGQVEVDATEIIILNKAKNPPFEIKDGI EVSEQTRLKYRYLDLRRPEVQQAIILRSKILRATHEFFDENGFIDIETPILGKSSPEGAR DYLVPSRIYPGSFYALPQSPQLFKQLLMGAGFDKYYQLARCFRDEDLRGDRQPEFTQIDM EMSFADEETIQSYTEGLLKKIMKDVKGIDLKTPIKRITWTDSMNKYGCDKPDTRYGMLIH DLSPIFKDSDFKVFSGAIADGGFVKGIAVKNGAKEYSRKKIDKKADFIKRFHAKGLAWVK FEDGEFSGPVARFLTDENKEALKKEFDLEGGELVVFVADKWKVCCDSLDHLRREFAKETG IIPKGVYDFVWVVDWPLFEYDEGLGRWVAAHHPFTMPDDEGVKLLTTEPHKAHARSYDIV MNGDEMGGGSIRIHKRSIQENMFKALGFTKKRAYEQFGYLMDALDMGFPPHAGLAIGLDR FAMMLADKDNIRDVSAFPKNASTSEPMMHAPAPVADQQLADLGIEVEEKYQDSVKATEER LEKMAAEDAAENSTWDK >gi|256541451|gb|ACPV01000023.1| GENE 41 42969 - 44153 1375 394 aa, chain - ## HITS:1 COG:L56488 KEGG:ns NR:ns ## COG: L56488 COG0436 # Protein_GI_number: 15672039 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Lactococcus lactis # 7 391 2 386 391 327 42.0 2e-89 MPNLSSDLTSTINERLNNLTASKIRAFDQKVSEISGIIKLTIGEPDLATPDHIKDAAIRD IQANDSHYAPQAGKPELLEAISNYLDRSIGVHYDPKSEICVTVGATGALNDVFMTLLNPG DKILVPTPVWALYFQLIKMTGAIPIQVDTKKDDFILTAEHLRHVLNGRGKGAKAIILTDP SNPTGRVYSATALKTLADVIKEYKIFSVTDEIYAELVYGKAKHHSLSEYIPDRNILISGL SKAYAMTGWRLGYIAAPKQIMKSIRKINSFLVTSVTDNVQIAAVEALNNGQNDPKKAREI YEARLNFMQSGLEKLGFEMATPQGAFYIFAKIPEKYGTNDEQFAFELAQKAKVGVTPGRY FGKGGEGYVRLSYASSTEQLKESLARISDFVNNL >gi|256541451|gb|ACPV01000023.1| GENE 42 44272 - 44529 225 85 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00989 NR:ns ## KEGG: LCRIS_00989 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 85 1 85 85 111 96.0 6e-24 MQKLLLLTIFLLSLSACTKPQLSSVPRDKSATTIKIVDRKLELHQPTKRPLQPLNGILPH WLQMPDKSLPKPAIYTNLNTVLKNK >gi|256541451|gb|ACPV01000023.1| GENE 43 44633 - 45823 1138 396 aa, chain + ## HITS:1 COG:lin1939 KEGG:ns NR:ns ## COG: lin1939 COG0452 # Protein_GI_number: 16801005 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Listeria innocua # 4 390 6 391 399 293 43.0 4e-79 MSRITIYMTGGIADYKAVNVIRDLEKAGHQVQIVMTKNAEHFVTTNTLAALTKYPVLDDL WSKENQSSIPHVHLARWTELALVLPATANFIAKMATGIADDAASTTILATSAPKLVVPAM NDQMWNNPATQRNIAFLKEHGVEIMEPAVGMLAEGYAAKGRMPEPGAIVAWIKNFTEQQN VLQGKNIVITAGGTEEAIDPVRFIGNRSSGKMGISLATEAAAMGAKVKLIYGNVSMPLPQ NPRITLIHVSSSEEMLVAVKKEFKHSNVLIMAAAVADWRMKQVADHKLKKQADQQTLTLT LVKTTDILREVASHKQRGQIVVGFAAETNNLLQNAAKKLSSKGADMIVANDVSKNVFGND EDQVTILQKNKSTKKWPKMSKRKIAQKLLQLIAQKI >gi|256541451|gb|ACPV01000023.1| GENE 44 45837 - 46037 206 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSYQLFLFSLLIPNTYNTSIYHLNKDKKHLLLTFSFHIIVFITCLKSLDAILQNDYKRNI DHIVHY >gi|256541451|gb|ACPV01000023.1| GENE 45 46328 - 46546 256 72 aa, chain + ## HITS:1 COG:BMEII1060 KEGG:ns NR:ns ## COG: BMEII1060 COG0656 # Protein_GI_number: 17989405 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Brucella melitensis # 6 72 24 90 294 66 44.0 1e-11 MYSDKTLMLNNGVEVPRIQLGTWLINNDDVRKVIRQAINVGYRAFDTAKDYGNESGVGKG IWNSDVESSDIF >gi|256541451|gb|ACPV01000023.1| GENE 46 46638 - 46886 278 82 aa, chain + ## HITS:1 COG:Cgl1021 KEGG:ns NR:ns ## COG: Cgl1021 COG0656 # Protein_GI_number: 19552271 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Corynebacterium glutamicum # 1 81 88 166 267 99 55.0 2e-21 MLLIHSPQPWIEVNRINDRHFEGNLENWRAMEEALKAGKVRSIGVSNFLQEDVANIVNNS SIKPVVNQIEVHIGNVPTDLMK >gi|256541451|gb|ACPV01000023.1| GENE 47 46941 - 47162 79 73 aa, chain + ## HITS:1 COG:Cgl1021 KEGG:ns NR:ns ## COG: Cgl1021 COG0656 # Protein_GI_number: 19552271 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Corynebacterium glutamicum # 1 61 187 247 267 61 47.0 4e-10 MLKDPRIRTYAEKYHVSPAQLMLAFDLQLGCIVLPKSDNVKEMQENLNIDFEISADDMAD LVKLKENTQTMAV >gi|256541451|gb|ACPV01000023.1| GENE 48 47211 - 48023 791 270 aa, chain + ## HITS:1 COG:SP1291 KEGG:ns NR:ns ## COG: SP1291 COG0561 # Protein_GI_number: 15901151 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 4 265 3 263 268 218 45.0 7e-57 MEEIKLIAIDIDGTLVNSKKEITPAVKKAILTAQKQGKQIVICTGRPLSGTQRYLDELGL NGQENQYVVSFNGAVVESTAGQVIFKQGLKYEDYVDLETIARKLNLHFHSVSLDRIYTAS RDLGHYTIYNSRVVKLEVSYRTQEEMKQIPIIKCMYVDDPDYLDDKIESPLFEMMKDRVV FSKTEPFYYEATAAGVDKGTGLKRLCDYLKIDRSNVMALGDQANDMPMLTYAGLGIAMGN AVEYTKQHADEVTADCDHDGVAVAINKILK >gi|256541451|gb|ACPV01000023.1| GENE 49 48090 - 49055 984 321 aa, chain + ## HITS:1 COG:PAB0514 KEGG:ns NR:ns ## COG: PAB0514 COG0111 # Protein_GI_number: 14520969 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Pyrococcus abyssi # 1 312 1 306 307 224 41.0 1e-58 MNKAKVLVLGGLRDEALTDLKNICQVDIGPVGHRPEDDREWVLDHIAEYDGVIVAKMAFD REMIDAAKNLKIISTYGVGFDHVDVEYAKEKGIVVSNCPKSVLRPTAELAWTMIMASARR LHYYDDALREGVFLNADEYDNQGYSIEGKTLGIVGMGRIGQQVARFAKAFGMTIIYHNRH QVDDQIAAELDAKYVDLDTLAKEADFVSLHTPATAETYHLVNSDFLKKMKDTAFLINVAR GSLIDGDALIAALKNGSIAGAALDVFENEPHPRPELVEMDNVIMTPHVGSATHIARFNLS KEAANNVLSFFKDGQAINQIN >gi|256541451|gb|ACPV01000023.1| GENE 50 49122 - 50507 1344 461 aa, chain - ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 4 458 3 460 463 434 51.0 1e-121 MKFNIFRKQNVENYLGKDIKFSKTMNAVDLMSLGVGAVIGTGIFILPGTVAATLTGPGVS LSFVVAAIVCALAGMCYAEFASAIPVAGSAYSYGNIVYGEFTGWIIGWALILEYMLSVAT VAAGWSSYFSSFIAPFGLKIPHAISGPMNLNNGVYFDLVSVLIILLISILLSRGMKNSIK INVVAVFIKIAIILIFIFVGLQFIKPNNYHPFLPYHFSGVIKGATTVFFAFLGFDVVSSS AAEVKNPKKNMPLGIIGTLAIAAVLYFGVSIVLTGMVNYTKLNVSNPVAFALQYVHQNWV AELLSFGAMLGMATMMLTMIYSSSRLIYAMARDGLLPSAFSKLDKKHNSPQNALVAVTII IAAGAAFFSVDQLANLVNFGTLFAFTLVSFGILKLRKRTDIVNDGFKVPGYPYLPIISGL ICIFMICHLSSEVYLMAAIWLIIGAVIYFIYGYHHSQLDHD >gi|256541451|gb|ACPV01000023.1| GENE 51 50605 - 51219 250 204 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|154175107|ref|YP_001408238.1| ribosomal protein L22 [Campylobacter curvus 525.92] # 3 190 6 184 199 100 29 2e-20 MTNLVFDLINQFGYLAISLLIAIENIFPPIPSEVILSFAGFATHHSQMNVFGVIIASTIG AVVGALVLYWIGTLLNPDRLEKLFDHKLFKLLGFKKGDVQKAIRWFDKYGTGAIFYGRCI PVVRSLISIPAGIAKVKLPNFLIYTSLGSLLWNAILVGLGSYMGENWEQIVLIFEEYSLI IGGLILIALIYFSCKWYKQKIKAD >gi|256541451|gb|ACPV01000023.1| GENE 52 51359 - 53161 1634 600 aa, chain + ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 1 596 1 586 603 586 50.0 1e-167 MATQLIENKLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYFKSKQVGRRAELVRE IRDYDIITVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHDPQTRLTSIVH KDGGYYFGPYPNVYAAQATLKFIQKVFPLRRCHGYQGRPCLYYHMGQCLGACFKKVPQKE YEEQIKKIKSFLNGDIASVKQSLTEKMAQAASNLEFERAAEIRDQLKYIEETVEKQKIIS NDNTQRDIFNYYVDKSWISVQIFFLRQAKLLRRETRMFPLTDATDPEDAFTSFIVQFYGQ RNRVLPKEILIPEGFDNATLAEVLKVPVRTPQRGQKKSLLDMAKDNAKLKLDDKFRLLEL GNRKTKGAQKEIFDALGLPYGHFIESFDHSHIQGADPVSALVVFKDGEPEKTAYRKYKLK GEVEHQNGGDEVRNTREVVRRRYGRLLREHKRMPDLILMDGGQIQVDACLDVLRNELNLN IPVAGMVKDDKHRTNHLLFGDPINGIPLKLIPLNPKSEGFYLMTRVQDEVHRFAITFHRR RHAKNALSSRLDSIKGIGPKSRNKLLREFGSLKKIKEASIDDLRRAGLTLTQAQTVKLTL >gi|256541451|gb|ACPV01000023.1| GENE 53 53240 - 54544 1563 434 aa, chain + ## HITS:1 COG:SPy1333 KEGG:ns NR:ns ## COG: SPy1333 COG0536 # Protein_GI_number: 15675273 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pyogenes M1 GAS # 1 433 1 436 437 435 58.0 1e-122 MPTFVDQTKIEVQAGKGGDGMVAFRHEKYVPNGGPAGGDGGRGGSIIFVADSGLRTLMDF RYRRKFKADSGENGRIKSQYGRAAKDLYLKVPVGTTVYDYDTNELIGDLTEKGQELVVAK GGRGGRGNIHFATSVNTAPEIAENGEPGEDRVLRLELKLLADVGLVGFPSVGKSTLLSVT TKAKPKIAAYQFTTLTPNLGMVILPDGRDFSMADLPGLIEGASQGVGLGIQFLRHVERTK VILHLVSMDPNNGREAIDDYHTIKKELKNYETDLSKKRELIVASQMDIPGAEEKLAEFKK ALKAEGNNEPIYEISSVTHKGVDKLMSDTANLVTEVEQEQAEEQPKLAQKIKEYKYQAPQ KNEFTVEQVGEHEFIVKGEQLERLVQMTNLDHQDGIMRLARKLKRLGVDDALREKGAVNG DDVAIGKFVFEFVQ >gi|256541451|gb|ACPV01000023.1| GENE 54 54560 - 56476 1217 638 aa, chain + ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 5 637 3 605 605 379 39.0 1e-105 MKKNRFITGYSGLRALAVIGVILYHLDPNSFMGGYLGVPIFFVLSGYLVTDHMFNSYDKT GSYNNRHFYLSRIKKLYPQLITVLWLSAAYIFIFQRNLLAKLNQVVLANLLNVFNFWQIH NGQSYFERFAANESPFTNLWTMSIEGQFYIVWPIVIYLLVKLVKKKKNIFWILVGLSAVS ALEMAILYFLKADINRIYYGTDTRFFSLGLGAALAVVWPIESLNQQVERKVGWILDLVGL ASFALMLAMFFSKWMNPQQAFTYSGGMLLFTLDVCILVAVIAHPGSHWNQILTNRLFDWI GSRSYGIYLYQFPVMIFFEDKVNIGDNPMLYHLIEVILILVITEITYRLIERPMGRITWD KTKQYFARIFNFETKDYFKKGQAALAALILILGSAAIAISPGVKAEDFNKSQLAQRINQN SKKQKTDNAKLIEKLKKEKKKKEKKSKIIREAELQTKKHPINKSFVKYGISQLDLQLAQH VQVTAIGDSVMAGSSNDLKRLMPKALIDAAVSRQLNVAFGLLDSYQSQGVLADNILIGLG TNGPFSMEDLDRIMHQAGPKRKVFWINVHVPTRDWQNSVNNLLNQGAKRYHNLIIIDWYS YSKNHPDWFYGDHTHPNLKGSKYYSALVTKTIVKHSKF >gi|256541451|gb|ACPV01000023.1| GENE 55 56494 - 57432 775 312 aa, chain + ## HITS:1 COG:lin2084 KEGG:ns NR:ns ## COG: lin2084 COG1234 # Protein_GI_number: 16801150 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Listeria innocua # 1 300 1 299 306 326 55.0 4e-89 MELQFLGTGAGQPSKQRNVSSVALKLLDELNEIWLFDVGEATQHQILRTNIKLRKVTKIF ISHNHGDHIFGLPGLLSTRSFQGDVGPITIYGPSGIEEFVRTALKVSRTKISYSIRFVEL AKSGLICEDKGFRVYTEQLDHRIPSFGFRVVEASHPGELLIDKLAQYNVPNGPLLGKLKN GEKVTLADGTVLDGKNFLGPTKPGRIVTVIYDTRSTPSIARLAKDADVLVHESTFAGDEQ KLAHDYYHSTSVEAAKIARKDNVKLLCLNHISARYMGAKGKKLEKQAKKVFSNTVLVNDF DQINIPMKGSEK >gi|256541451|gb|ACPV01000023.1| GENE 56 57429 - 58223 832 264 aa, chain + ## HITS:1 COG:BS_yqjQ KEGG:ns NR:ns ## COG: BS_yqjQ COG0300 # Protein_GI_number: 16079435 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Bacillus subtilis # 8 257 7 252 259 223 46.0 2e-58 MKDSLRNKVVVITGASSGIGRSIALESAGRGATVILIARRKDQLDEIAAEAKELSGAEAY VFPTDMGKPEEIEQTFNAITKQVKHIDFLVNCAGFGKFEEFMDQKMQDVTNMFQVNVLGL MYFTRLVGRVMMEQKTGQIINFGSIAGKVPTTKSAAYSSSKAAVIQFSNVLRLELKPFGV KVITVNPGPVYTNFLNVADKTGNYVKNVQEFMLDPDDVAWQVVHFFGSDKRELNLPLSLA VAAKLYNLFPSIGDKISLKFASRK >gi|256541451|gb|ACPV01000023.1| GENE 57 58230 - 58478 165 82 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01002 NR:ns ## KEGG: LCRIS_01002 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 82 1 82 82 109 100.0 2e-23 MEKQRNLIIGSVVALIAVIFVVLNTSPVAINFGFFKVRLPLIVVLVVMVIIGMIIAWFFG RDTKEKTDHKVTFFNKKEKKIE >gi|256541451|gb|ACPV01000023.1| GENE 58 58581 - 58769 330 62 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879080|ref|ZP_03996969.1| 50S ribosomal protein L32 [Lactobacillus crispatus JV-V01] # 1 62 1 62 62 131 100 8e-30 MAVPARHTSKQKKRSRRGHIKLSVPAMHYDATTGEYRLSHRVSPKGYYKGRQVVNNNDNS NN >gi|256541451|gb|ACPV01000023.1| GENE 59 58829 - 60385 1452 518 aa, chain + ## HITS:1 COG:L99798 KEGG:ns NR:ns ## COG: L99798 COG0737 # Protein_GI_number: 15672285 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Lactococcus lactis # 1 517 1 515 519 369 38.0 1e-101 MKLVFLHSSDTHGFLLPTDYQNKTDYHAPFSLSRVSSVIKSEKKKYGDNNVVVTDAGDCL QGSPLASYAHSTGDYSDLRIFTQAYNAVGYDARCLGNHDFNFGLDYLSYYVDNNEAPIIN DNVLDAETEVPFFGREYTIIKRNGLKIGLLGITTQYIPHWEPKENVKGLKFASAYEKIKH YAKILRPQVDILAVMYHGGFESDPETGKATEPNRGENEGYQILTKIPEVDVLLTGHQHRR LNLVTRDTAIVQPGYRGEAVAEVVLDIDDDTKKIKSMSTKLIDTKDYDPDPVIVDIVSDL DKRTQKWLDQPIAHLDKPARIENAMKGRIEGAPFINLIQQMQLWFTKADVSATAVMSETA KGFDKTITMRDVLLNYPYANQLCRVKLTGKELRHIIEHSAGFLKKDEAGNIGFIDRWIKP KPMLYHFDVFYPVEYEADLSRPVGERLTKLTLHGKPIKDDQIYHLAVNNYRAMGGGFYPE YSMDKIETTLDKDYVQMFSEYLTHGPVEVDTKKNYKFY >gi|256541451|gb|ACPV01000023.1| GENE 60 60447 - 60665 289 72 aa, chain - ## HITS:1 COG:no KEGG:LBA0954 NR:ns ## KEGG: LBA0954 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 72 1 72 72 110 80.0 2e-23 MGRYIITTVWSVIYMLVVGFIAGPLTRSASFNGTDLRNCVIVGIIFGILFSAIIATITAR SHKDNSKYSKLK >gi|256541451|gb|ACPV01000023.1| GENE 61 60781 - 63888 2914 1035 aa, chain + ## HITS:1 COG:lin1609 KEGG:ns NR:ns ## COG: lin1609 COG0587 # Protein_GI_number: 16800677 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Listeria innocua # 1 1010 1 1015 1108 705 40.0 0 MQVAALQNISSFTLLSSPTKVSDLIKDAKEKGYPVVGLADVNVTYGLVNFYELAKKAGIK PLLGMQLRLNGLVDSTQKYDLLVFAKTNKGYHNLLRLSSAVNLLTENGQNDKVLTLNELT KYLDDLLIIVPANLKSELMALHDTNQALGSDYVRQLKKLTFDLYLGVYASKASIDYIDYV RGLAKQFELSLVAVEDSQYLRPREQFLQKTLRAIAKGDKLQDILPLAKQAGSHYLDSAQN VLERYHQYDLDDAINNTWKIAQKCNAEVIFQKPVLPKYHQDKFPTSEEYLRYLAQTGLQA RFGQKSIPAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHRVKITTGPGRGSACGSLV SYSLRITEVDPIQYNLLFERFLNPARHEMPDIDLDIPDIQRNTVIKYMYQKYGMDHAAQI LTFGTMAAKQVLRDVGRVFGLTGPEITKWTHAIPYSKDKMGLKKAYQESRELRLLVDATP ENKLLFKTALGLEGLPRHYSIHAAGLVISDDSIAGISGLQAGPFGIPVTQQTKKYVESLG LLKIDFLGLRNLTVLGNILALVRQQGVKLDPNTIPLNDPKTMELFQQGKTDAVFQFESGG IRGVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVARKNGTATVHYPDPSLKQILQSTYG ILVYQEQVMQTAQILAGFSLGEADILRRAMSKKNQNVIEQERGKFIAGTVKKGHPKEVGE RVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFYTAMLNSSTSAKAQSYSMQA QEAGVRILPPDINHSQLDYTLQDGKILVGLKAIKGLRLDFAKEIAANTKPYKSFNDFLRR IDAKFLQVDAIEALIMAGAFDSIEDNRNELLLNCKDVIANVQLTGQNMSLSEILGDAPLK PAEPPTAAQKAEMEEKALGFTTTTTPLIAVQKYAQKFNARPLNQFQLNDSGISVGKLMKL KQIRTKNGKTMAFASFADTSSEQEIIIFPPAYEKFGSILKEGDIYLLGVKVQGDRFDQNK KQYFLTNLRKVNFKE Prediction of potential genes in microbial genomes Time: Wed May 25 05:09:57 2011 Seq name: gi|256541450|gb|ACPV01000024.1| Lactobacillus crispatus 125-2-CHN cont1.24, whole genome shotgun sequence Length of sequence - 10741 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 4, operones - 3 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 26 - 85 4.6 1 1 Op 1 12/0.000 + CDS 127 - 1089 1258 ## COG0205 6-phosphofructokinase 2 1 Op 2 . + CDS 1124 - 2893 2667 ## COG0469 Pyruvate kinase + Term 2934 - 2968 3.2 + Prom 2932 - 2991 9.8 3 2 Op 1 . + CDS 3020 - 3913 451 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains 4 2 Op 2 . + CDS 3900 - 4805 827 ## COG4974 Site-specific recombinase XerD 5 2 Op 3 . + CDS 4853 - 5176 278 ## LCRIS_01011 reductase 6 2 Op 4 21/0.000 + CDS 5163 - 5903 452 ## COG1354 Uncharacterized conserved protein 7 2 Op 5 12/0.000 + CDS 5893 - 6483 601 ## COG1386 Predicted transcriptional regulator containing the HTH domain 8 2 Op 6 . + CDS 6487 - 7203 780 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Term 7370 - 7405 5.1 + Prom 7272 - 7331 3.4 9 3 Tu 1 . + CDS 7421 - 8110 702 ## COG3601 Predicted membrane protein + Term 8118 - 8156 7.2 + Prom 8129 - 8188 7.9 10 4 Op 1 . + CDS 8212 - 8673 438 ## LBA0966 putative N-acetylmuramidase (EC:3.5.1.28) 11 4 Op 2 21/0.000 + CDS 8725 - 9396 740 ## COG0283 Cytidylate kinase 12 4 Op 3 . + CDS 9469 - 10677 2022 ## PROTEIN SUPPORTED gi|227879095|ref|ZP_03996984.1| 30S ribosomal protein S1 + Term 10686 - 10729 9.2 Predicted protein(s) >gi|256541450|gb|ACPV01000024.1| GENE 1 127 - 1089 1258 320 aa, chain + ## HITS:1 COG:lin1606 KEGG:ns NR:ns ## COG: lin1606 COG0205 # Protein_GI_number: 16800674 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Listeria innocua # 1 313 1 313 319 349 57.0 3e-96 MKRIGILTSGGDAPGMNAAIRAVTKTAIHHGLEVFGIRYGFAGLVAGDFVPLTTENVDHK ISEGGTFLYSARFPEFAQEEVQQKGVEQLKKHGIDAVIVIGGDGSYHGALALTRHGVNSV GLPGTIDNDIPYTDYTIGFDSACRTAMDAIDKIRDTASSHHRVFVVNVMGRECGDIAMRV GVASGADAIVIPERSYDVKEIAETLTRGFADGKDHGIIVLAEGVMAADKFKDELLKYGDF DARANVLAHMQRGGSPTVTDRVNATKMGNYAVKLLLDGKGGLAVGMENGELNTHDILDLF DGKHQGDYALLDVNEEMTKY >gi|256541450|gb|ACPV01000024.1| GENE 2 1124 - 2893 2667 589 aa, chain + ## HITS:1 COG:lin1605_1 KEGG:ns NR:ns ## COG: lin1605_1 COG0469 # Protein_GI_number: 16800673 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Listeria innocua # 1 479 1 475 475 516 58.0 1e-146 MKKTKIVSTLGPASNDIETITALAKAGANVFRFNFSHGDHPEHLARMKMVRQVEKDTGLL LGIDLDTKGAEIRTTEQEGGKFTINTGDMIRVSMDATKKGNKDMIHVTYDGLYDDTHVGG HVLIDDGLVDLLIKEKDDSKRELVCEAQNTGVIGSKKGVNAPGVEIRLPGITEKDTDDIK FGLNYGINFITASFARKAQDILDIRKLCEEAGADYVKIFPKIESQEGIDNADEILQVSDG LMVARGDMGVEIPFMEVPFVQKSLIRKANALGKPVITATQMLDSMQENPRPTRAEVSDVA NAVLDGTDATMLSGESANGLYPVKAVKAMAEIDERTEKQMLKRNTLALQRFEAYKGSNVT EAIGESVVRTAQELGVKTIITATNSGYTARMISKYRPNADIIAMTFDEKVQHSLGIVWGV QPVLTEKPKSTDDMFEMAAKVAKEKGYVKDGDLVIIVAGTPLGDSGTTNLMKLQIIGNKL VQGLGVGNGSVIGKAVVANSAEEANSKVKEGDILVAKTTDPDYNPAIKKASGLVVEASGL TSHAAVIGLSLGIPVVVGATDATDKISDGSTITVDARRGAIYQGKISNL >gi|256541450|gb|ACPV01000024.1| GENE 3 3020 - 3913 451 297 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 41 270 39 266 285 178 41 2e-44 MLGTVRKGKITDENDKAYYVQIDGLTYELKKIEITQDDIPKIGDEVEGFIYDNKSHDREM TQFLPFAQPDQYGWGKVTEVRPGLGVFVDVGLPDKDVVLSMDDLPREKERWPRRDDRLLV RLETDEKDRIWAKLADENIFDQLAANFPRGMNNENVFATVYVTREIGAFVLTSDYYLGFV HESQMPRPMRLGEQFKGRVVGVSQYGRLNLSALPRAFEEIDDDAQMILMSLRRRETKTLP FYDKSSAQEIKSYFGISKSAFKRAVGHLLKAGLIEEDKTAGTITLIKDPEENDNGED >gi|256541450|gb|ACPV01000024.1| GENE 4 3900 - 4805 827 301 aa, chain + ## HITS:1 COG:lin2069 KEGG:ns NR:ns ## COG: lin2069 COG4974 # Protein_GI_number: 16801135 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Listeria innocua # 6 300 1 296 297 258 43.0 1e-68 MEKINLKDQIDDYLRYSQVERGLSDNTINAYRQDLEEFQTFVENEGMASWPTEASDVDAF LARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSQAEM NRLLEQPNTKRKLGIRDRAILETLYATGMRVSELINLELQDLHDDLGLVRVLGKGEKERL IPISPVALDWIKKYENEVRDPLILQVGKSDEHIFLNNRGKKITRQAIWQMIKKYCQMAAI TKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQILNVYQKTHPR L >gi|256541450|gb|ACPV01000024.1| GENE 5 4853 - 5176 278 107 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01011 NR:ns ## KEGG: LCRIS_01011 # Name: ribT # Def: reductase # Organism: L.crispatus # Pathway: not_defined # 1 107 14 120 120 193 100.0 1e-48 MGLLSYLPDFKNIENLKEEITLNQDENDFILYLYRNSQNNMVGVIGTQVSNQFVIIRYLS LAPGFREISYERKIVDELKHEYPDKRITAVPEYTNLLKTVEEDNGQK >gi|256541450|gb|ACPV01000024.1| GENE 6 5163 - 5903 452 246 aa, chain + ## HITS:1 COG:SA1326 KEGG:ns NR:ns ## COG: SA1326 COG1354 # Protein_GI_number: 15927076 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 8 240 12 244 251 139 37.0 6e-33 MDKSNLTLELPNFEGPLDLLLHLIQSQKIDIYDIPIAQITSQYLEYLRQMQSLNLQIAGE YFVMSSTLLRIKSQYLLPQNDFVDDIQPDEDPRDELVQQLVQYSVFKKISAYFKERNEEV PITVAKEASVSTTAKVQPLPKGQITAQELATTFTMVLHRLKLQQPDTASIRVAETPINEM MDFLHGQLKRKRQVSFFACADKMQNISDVIGLFLATLELCKKQLIQITQAREFGDLNLER IDTNGK >gi|256541450|gb|ACPV01000024.1| GENE 7 5893 - 6483 601 196 aa, chain + ## HITS:1 COG:SP1875 KEGG:ns NR:ns ## COG: SP1875 COG1386 # Protein_GI_number: 15901703 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Streptococcus pneumoniae TIGR4 # 3 191 2 188 189 155 47.0 5e-38 MASKLANLEALLYVAGDNGLEEQNLIELLEVDGEELGQLVTRLQQKMKADPDSGMQIIHI ANTYKMTTSQQTAKIIEKYFQKDLTKNLSQSALEILSIIAYRQPITRIEIDDIRGVNSSG ALQTLIWRGLIKQDGKKDAPGHPKLYVTTDYFLQYFNYQSLADLPLIEDFEDTTDGEEID LFDSKGSADKHLEKEG >gi|256541450|gb|ACPV01000024.1| GENE 8 6487 - 7203 780 238 aa, chain + ## HITS:1 COG:lin2063 KEGG:ns NR:ns ## COG: lin2063 COG1187 # Protein_GI_number: 16801129 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Listeria innocua # 3 234 2 233 244 263 61.0 3e-70 MAERLQKVIAEAGIASRRKAEKMIVAGRVKVDGHVVTKLGTKVDTFSNITVDDEPIERES LHTYLFYKPRGVVSTAEDDRGRKTVVDYFEDLPYRLYPVGRLDYDTSGLLLMTNDGKLAN LLMHPKNEVAKVYVAKIKGILTPDEIKTLTQGVKLDHFKAAPAKVKVLKTDHKKDTQIVQ ITIHEGHYHQVKRMFKAVGHLVDKLAREKYAFLTLDSLTSGQYRELSKHEVDKLMQLN >gi|256541450|gb|ACPV01000024.1| GENE 9 7421 - 8110 702 229 aa, chain + ## HITS:1 COG:lin2059 KEGG:ns NR:ns ## COG: lin2059 COG3601 # Protein_GI_number: 16801125 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 7 216 2 179 203 76 30.0 5e-14 MDQAKSKNSSLTNVIAYALIGCIAFVVMKFEFPIMPGVAFLKFDFSDVIITIGMFIFGIV PGVIIALIRMLLSLIFSGFALPSLVGNLAAFLASMSFAVPFYLLSKNVSADNRKTMMGRV KPICGLVIGIIAMAAVMSLANAFVLTPIYAVTAVPNLPAINSYSALLSFTEKVYLGQLLH LPSMSTYIFSIIMPFNLLKGLINAVAVYLLFEATLKTIKPFVRKRFNLN >gi|256541450|gb|ACPV01000024.1| GENE 10 8212 - 8673 438 153 aa, chain + ## HITS:1 COG:no KEGG:LBA0966 NR:ns ## KEGG: LBA0966 # Name: not_defined # Def: putative N-acetylmuramidase (EC:3.5.1.28) # Organism: L.acidophilus # Pathway: not_defined # 1 153 1 153 153 158 77.0 6e-38 MDKKSTGPYQHYERPTEKRSSQDSQPSGSARWIAVIIILAVILIALIPVVHRLASSHSEK AEEVQTVKKVSSKSSKSVKTKKTSSSSFSKKKSEKASSSSSSSSATPKTYLVQSGDTLNE IAEKNGLTVDELARLNNLKDSSNIEAGQTLKLK >gi|256541450|gb|ACPV01000024.1| GENE 11 8725 - 9396 740 223 aa, chain + ## HITS:1 COG:SP1603 KEGG:ns NR:ns ## COG: SP1603 COG0283 # Protein_GI_number: 15901443 # Func_class: F Nucleotide transport and metabolism # Function: Cytidylate kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 220 4 222 223 202 51.0 4e-52 MQVAVDGPASAGKSTVAKIIASKLSFVYIDTGAMYRACTVIARNHNLDYGDEAGILNAID EDGIELKSENGEQKVYVAGKDVSKEIRTPEISANVSEVSALPKVRKKMVSLQREMAGKTN VIMDGRDIGTTVLPNSEVKIFLVASARSRAERRLLDFKERGIKSDQTVDEIEKDIAARDY KDSHRKISPLKKADDAIEIDTTNMSIDEVVEAILAQIEKKQKN >gi|256541450|gb|ACPV01000024.1| GENE 12 9469 - 10677 2022 402 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879095|ref|ZP_03996984.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01] # 1 402 1 402 402 783 100 0.0 MSENSNQFLDALKQMQGVEVGDIVDVEVLDIEDGQIDVGVENAGVEGVITRREYTSDRNA DLRDLVKPGDKFKALVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEDGNAVEGTVT SSVRGGLIVDVGTRGFLPASLISNRYVSDLKPYIGKTMKLKITEIDPNKNRLILSHKDLV EEEREEAFDKVASQLVVGDVVEGKVSRLTNFGAFIDVGGVDGLVHISEISYKHVDKPSDV LKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATADLNEGDIFEGEVKSLTNFGAFV EVADGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDPSDRRISLSIKAADSNASS ENHNSRPRRSRNENSVNKKYMSDNDNGFALGDIIGDQLKDRK Prediction of potential genes in microbial genomes Time: Wed May 25 05:10:03 2011 Seq name: gi|256541449|gb|ACPV01000025.1| Lactobacillus crispatus 125-2-CHN cont1.25, whole genome shotgun sequence Length of sequence - 4455 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 3/0.000 + CDS 49 - 1356 1300 ## COG1160 Predicted GTPases + Term 1364 - 1425 0.8 + Prom 1360 - 1419 7.2 2 1 Op 2 . + CDS 1516 - 1791 182 ## PROTEIN SUPPORTED gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 + Term 1807 - 1851 3.1 + Prom 1793 - 1852 4.1 3 2 Tu 1 . + CDS 1872 - 3119 1260 ## COG0457 FOG: TPR repeat + Term 3127 - 3161 4.0 - Term 3114 - 3148 3.2 4 3 Tu 1 . - CDS 3160 - 4389 1208 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Predicted protein(s) >gi|256541449|gb|ACPV01000025.1| GENE 1 49 - 1356 1300 435 aa, chain + ## HITS:1 COG:lin2051 KEGG:ns NR:ns ## COG: lin2051 COG1160 # Protein_GI_number: 16801117 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Listeria innocua # 1 435 1 436 436 546 61.0 1e-155 MVLPVVAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGG ITWEGGKIEEEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIAHLLYRTKKPVILAVNK ADNPEQRSDIYDFYSLGLGDPIPVSSSHGTGIGDLLDQIVNDFPDDKDTEADDVISFSVI GRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTHDGVKFKVVDTAGIRRRGKVYE KTEKYSVMRAMSAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLPKK NSTSAKEFEREIRDEFQYLDYAPILFVSAKTGQRLDQIPNMVKEVYDNQNQRIQSSVLND LLLEASKLVPTPMVKGKRLRVYYMTQVSTNPPTFVVFVNDPELMHFSYERFLINQLRQNF DFTGTPIKILPRKRK >gi|256541449|gb|ACPV01000025.1| GENE 2 1516 - 1791 182 91 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] # 4 91 6 93 96 74 38 1e-13 MANKAELVSEVASKTKLTKKQVANTVDAILDSIQENLAKGEKVQLIGFGTFEVRHRAARK GRNPQTGDEIEIPASEVPAFKPGKALKDAVK >gi|256541449|gb|ACPV01000025.1| GENE 3 1872 - 3119 1260 415 aa, chain + ## HITS:1 COG:lin2036 KEGG:ns NR:ns ## COG: lin2036 COG0457 # Protein_GI_number: 16801102 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Listeria innocua # 1 413 1 417 417 175 29.0 2e-43 MSYSEQLLDAIQNHDFSQNKHLLKEALDNDAPEVLSSLAENLTGLGFTDLAKEIYRALIA KFPKEDLFKVYLAEIMLNDGDDDDGLSLLYNVPESSSAYLDSLLVQADYYQTNGLIETAK DKLIRALQLAPEEDAIKFGLAEIEYLSGNYEQALELYQDLIKRQSTFSEVNLYQRLFATF AKLGNYEEAAEVIREHANSILDIDSKYEAGLVLLSVGDDKQAIKFLDEVIEQSPDYVNAY PLLAQAYDHQHDNEQVLRTAQAGLAYNELDETLYSMGARAAANLNELDTARDLLEKGLKV APDNSDLRMQLSNLYVHEHQAKENIALFSNLDEESVEPQAHWNMALSYEDLDDIQKAQSE FLLAYPDFKDNPDFLRQMIIFFNVQNNDEITKQLLERYLKLAPEDDEMQDLYNNL >gi|256541449|gb|ACPV01000025.1| GENE 4 3160 - 4389 1208 409 aa, chain - ## HITS:1 COG:lin2646 KEGG:ns NR:ns ## COG: lin2646 COG1502 # Protein_GI_number: 16801708 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Listeria innocua # 16 409 99 482 482 370 50.0 1e-102 MLAEHDLLPEKKRKPRARMLSELNLNNDDAILTFANKVKVFTSGPELFDQIIADLKQAKT SISLEFYTFYNDNLGKRVLRALEEASAKGVKVRVIYDVSGSRGTKPAFFNHLRELGGEAQ PFISTSKKHWFTTPRLNYHLHRKLIVIDHHIGYIGGFNIGDQYVNQSKKFGHWRDTHLRV VGQSPILMETRFAMDWNTSIRRTALPKFDLSELHAFTVERKDLDNDDNVAMQIVSSGPDN QHYGIRRGYEGIIAGAKNYIYIQTPYLIPEESILEALIIAANSGVDVRIMIPCMPDHPFV YRATEYYAKYLVAHGVKIYKYNDGFIHAKTMVSGSNISSVGSANQDFRSYTLNFEVNAFN YNIQLTQELKQIFEKDLASCSLLTNEYFNQQSKWLKFKQYFSRLLAPIF Prediction of potential genes in microbial genomes Time: Wed May 25 05:10:05 2011 Seq name: gi|256541448|gb|ACPV01000026.1| Lactobacillus crispatus 125-2-CHN cont1.26, whole genome shotgun sequence Length of sequence - 1338 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 + CDS 42 - 521 240 ## PROTEIN SUPPORTED gi|28378935|ref|NP_785827.1| ribosomal protein acetylating enzyme 2 1 Op 2 . + CDS 561 - 1337 295 ## PROTEIN SUPPORTED gi|149021643|ref|ZP_01835674.1| 30S ribosomal protein S16 Predicted protein(s) >gi|256541448|gb|ACPV01000026.1| GENE 1 42 - 521 240 159 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|28378935|ref|NP_785827.1| ribosomal protein acetylating enzyme [Lactobacillus plantarum WCFS1] # 1 141 7 149 184 97 36 7e-21 NKEIELVLPETWQAKDLFDQLQKNLTEFSKWLVWANKIDSVQKEADSIKMFQQKMVDGTA FNLVILVDGQPAGMIDLHNLNHESGEVGYWLSNDFQHLGIMTESVEFLKKYAFEQLKLDY LILRTHPKNSASQNVAKRSSFVYLKDDENGHKVFVLRNN >gi|256541448|gb|ACPV01000026.1| GENE 2 561 - 1337 295 259 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149021643|ref|ZP_01835674.1| 30S ribosomal protein S16 [Streptococcus pneumoniae SP23-BS72] # 1 257 1 260 262 118 27 3e-27 MQRSDIETELGKINFAYRKGDPLVVFLNGFGSFDTAQSFSKVIEALPNKYGYFASDYLNS GFSGKSLKDYTVSDEATKLAKIINDFNAKKVIILAHSIGGVYAMQMKDKINNLKAFVGIE PTTREIMLNPPKEPAYIEKNKNMAKLQEKIEADLREIFTPEENKKFWTTTEQNAKKFDEK DNLNAQAAYENDSFWKNTTRISDKTPSIVITEKYRENEYKRSEYTSNNPKSKVITLGESH YIHFEYPKQIAEIVKEVID Prediction of potential genes in microbial genomes Time: Wed May 25 05:10:06 2011 Seq name: gi|256541447|gb|ACPV01000027.1| Lactobacillus crispatus 125-2-CHN cont1.27, whole genome shotgun sequence Length of sequence - 3024 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 400 - 459 6.7 1 1 Op 1 . + CDS 522 - 1229 222 ## FI9785_957 hypothetical protein 2 1 Op 2 . + CDS 1303 - 1992 634 ## COG1478 Uncharacterized conserved protein 3 1 Op 3 . + CDS 2049 - 2552 456 ## LCRIS_01037 uridine kinase 4 1 Op 4 . + CDS 2555 - 3007 405 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes Predicted protein(s) >gi|256541447|gb|ACPV01000027.1| GENE 1 522 - 1229 222 235 aa, chain + ## HITS:1 COG:no KEGG:FI9785_957 NR:ns ## KEGG: FI9785_957 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 53 212 1 160 179 196 80.0 8e-49 MVRNAWTCVISSLYLAYDKFLIFSDNRASSKKKDKYNIKNIVGFFRKRNFWILLLLNVGY DCGTQFILIYWSIIYVEKLGFNLSLVYTLFMCALILGSILFSKISTSFNSKGITLLNTGS MIGAFILSGTLKNKYLLLCLFLLIELLMGMMSGQISATSNEAIYGESNKSTMLSTVSFIA EILVSISLFISNSIMKVFGDLKVMFFCIRSVFWCCFANNTINKGERYQINHGNRS >gi|256541447|gb|ACPV01000027.1| GENE 2 1303 - 1992 634 229 aa, chain + ## HITS:1 COG:SPy0536 KEGG:ns NR:ns ## COG: SPy0536 COG1478 # Protein_GI_number: 15674636 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 2 224 3 230 244 187 46.0 1e-47 MITIEALHNFPKIERKCNLSAEIIRTIKNEGFNIRDNDVLCIASKLISKSEGLFVHLNSI NPSQLALRLHQQIPRKAPRLIQIIIDQTEDKSGKKLKISKNFIGGWLPNGLFLTSAGVDK IDAGTAIVLPKNCDEIAKRISDDIFDQLKVRVAIIITDSDGRIDKKGATQVAIGLYGVSG LRKSQYQDKTNVETICDMLAASAGLLMGQKGKMLPIVKIHGIDYNRLYI >gi|256541447|gb|ACPV01000027.1| GENE 3 2049 - 2552 456 167 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01037 NR:ns ## KEGG: LCRIS_01037 # Name: not_defined # Def: uridine kinase # Organism: L.crispatus # Pathway: not_defined # 2 124 1 123 145 249 97.0 3e-65 MMTSKLIIIRGNSGSGKTTLSKEIHRRLPHNTLLIPQDTVRREMLNVKDGEKTFALPLLE NLLEYGYHHCSYTILEGILNAKWYADLFKKSQQLFGDQIYAYYFDIPFEETMKRHKTRHE HSFGEETMRSWWNEKDYLGFIPEYAFTSQINLDDEVEIVMNDIQVED >gi|256541447|gb|ACPV01000027.1| GENE 4 2555 - 3007 405 150 aa, chain + ## HITS:1 COG:SPy0477 KEGG:ns NR:ns ## COG: SPy0477 COG0494 # Protein_GI_number: 15674593 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pyogenes M1 GAS # 1 146 1 154 158 121 40.0 4e-28 MVKNYIKTLRQKVGHEPIILNFAGGILANSKNEILLQKRSDFNAWGLPGGALEFGESAPK ACVREFLEETGLKVRTKSLLGVSTNFIQHYPNQDVAQAVTVELVEKMSKEISSETLDLKY FSKDKLSKIFNKQHQIFIDHYFNEDYPFID Prediction of potential genes in microbial genomes Time: Wed May 25 05:10:13 2011 Seq name: gi|256541446|gb|ACPV01000028.1| Lactobacillus crispatus 125-2-CHN cont1.28, whole genome shotgun sequence Length of sequence - 2384 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 763 441 ## LCRIS_01038 phosphorylase, Pnp/UDP family 2 1 Op 2 . + CDS 795 - 1559 621 ## LCRIS_01039 phosphorylase, Pnp/UDP family + Term 1561 - 1610 7.0 - Term 1555 - 1592 3.2 3 2 Tu 1 . - CDS 1601 - 2383 618 ## COG2746 Aminoglycoside N3'-acetyltransferase Predicted protein(s) >gi|256541446|gb|ACPV01000028.1| GENE 1 2 - 763 441 253 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01038 NR:ns ## KEGG: LCRIS_01038 # Name: not_defined # Def: phosphorylase, Pnp/UDP family # Organism: L.crispatus # Pathway: not_defined # 1 253 1 253 253 494 95.0 1e-138 MNEGSFVLDIDLSKKAVIEPGVENLEYKFHEKLLFAFVPDDEINSFLDKHSHKTLGKFKT VSFRPKIYEVEVNNQLITLCQAPVGAPASTKFLDWLINYGVKQVLSVGNAGALDNLPENT MFVPQEAIRGEGTSFYYKEPSKIIALDKNFVRRVENEIKNLGFQYEEGTTWTTDGFFRET PNQVLQAKKLGAKTVEMECSALAACAEFRNISFAQILFTADSLADMDNYDKRNWGHDSYS VSLNIGSQVLASL >gi|256541446|gb|ACPV01000028.1| GENE 2 795 - 1559 621 254 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01039 NR:ns ## KEGG: LCRIS_01039 # Name: not_defined # Def: phosphorylase, Pnp/UDP family # Organism: L.crispatus # Pathway: not_defined # 1 254 1 254 254 518 98.0 1e-145 MNKQPFILDFDKHPHAVLEPNHDQEPFHFHPRLLYAFVPEKEINAFLDHHFHRTLGEFES CSFNPKIYEVQINNEFFTLCQAPLGAPAAVQLLEWLIAYGVEKVLTIGTAGALVDLPENA MLLPTRAIRDEGTSFHYMNPGQLVELDSIFLKEVEKILVELNIEYDEITTWTTDGFFRET PKKVAQFRQLGASTVEMECAALAACAQFRKIDFAQFLFTADTLADMDNYDERDWGGKSHS VGLNIGAKVLTKIK >gi|256541446|gb|ACPV01000028.1| GENE 3 1601 - 2383 618 260 aa, chain - ## HITS:1 COG:lin1820 KEGG:ns NR:ns ## COG: lin1820 COG2746 # Protein_GI_number: 16800887 # Func_class: V Defense mechanisms # Function: Aminoglycoside N3'-acetyltransferase # Organism: Listeria innocua # 1 256 16 268 268 168 37.0 1e-41 KNDFKSALRNAGIKDDDTVLVHTALSKFYYVPNGPETIVEALKEAVPNGTIMMPSQVSTN CDPATWEYPPVQKSLIQVVKDAMPPYNPTTSMTEGLGVTPEYFRTLPDVVRSTHPYLPIA IWGKNKVKIAQNQPLNIPYGIDSPLDYLYQNNGKTIFLGTDYETCTVLHYAESTIGRKTE TCSAATSLDESGKTIWTEYQNIDMDSYDDFNELGTEFEAKHPSAIKKVKLNNGVIKAINV KPLIDFARKWFIKKDNNHSI Prediction of potential genes in microbial genomes Time: Wed May 25 05:10:29 2011 Seq name: gi|256541445|gb|ACPV01000029.1| Lactobacillus crispatus 125-2-CHN cont1.29, whole genome shotgun sequence Length of sequence - 34286 bp Number of predicted genes - 45, with homology - 41 Number of transcription units - 15, operones - 7 average op.length - 5.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 26 - 1336 1170 ## COG0531 Amino acid transporters - Prom 1484 - 1543 7.8 + Prom 1469 - 1528 10.9 2 2 Tu 1 . + CDS 1561 - 2061 663 ## LCRIS_01044 lactocepin S-layer protein + Term 2072 - 2113 6.6 - Term 2058 - 2101 3.2 3 3 Tu 1 . - CDS 2288 - 3511 532 ## COG0582 Integrase - Prom 3534 - 3593 3.4 - Term 3527 - 3574 7.1 4 4 Tu 1 . - CDS 3687 - 4232 537 ## gi|256843102|ref|ZP_05548590.1| predicted protein - Prom 4305 - 4364 4.3 5 5 Op 1 . - CDS 4410 - 4715 189 ## gi|256843103|ref|ZP_05548591.1| predicted protein - Prom 4749 - 4808 2.8 6 5 Op 2 . - CDS 4810 - 5358 160 ## gi|256843104|ref|ZP_05548592.1| predicted protein 7 5 Op 3 . - CDS 5415 - 6446 493 ## COG4823 Abortive infection bacteriophage resistance protein - Prom 6470 - 6529 4.9 - Term 6449 - 6493 8.1 8 6 Tu 1 . - CDS 6593 - 7222 565 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) - Prom 7281 - 7340 13.7 + Prom 7279 - 7338 8.6 9 7 Op 1 . + CDS 7375 - 7629 243 ## COG1396 Predicted transcriptional regulators 10 7 Op 2 . + CDS 7626 - 7835 167 ## gi|256843108|ref|ZP_05548596.1| predicted protein + Term 7932 - 7968 -0.7 - Term 7653 - 7702 8.5 11 8 Tu 1 . - CDS 7832 - 8179 237 ## gi|256843109|ref|ZP_05548597.1| predicted protein - Prom 8199 - 8258 3.9 + Prom 8057 - 8116 7.6 12 9 Op 1 . + CDS 8277 - 8408 103 ## 13 9 Op 2 . + CDS 8408 - 8644 106 ## gi|256843110|ref|ZP_05548598.1| predicted protein + Prom 8868 - 8927 3.3 14 10 Op 1 . + CDS 8960 - 9778 761 ## LJ0300 Lj965 prophage replication protein 15 10 Op 2 . + CDS 9771 - 10070 221 ## gi|256843112|ref|ZP_05548600.1| predicted protein 16 10 Op 3 . + CDS 10067 - 10390 447 ## gi|256843113|ref|ZP_05548601.1| predicted protein 17 10 Op 4 . + CDS 10383 - 10634 220 ## gi|256843114|ref|ZP_05548602.1| predicted protein 18 10 Op 5 . + CDS 10643 - 10960 180 ## gi|256843115|ref|ZP_05548603.1| predicted protein 19 10 Op 6 . + CDS 10953 - 11207 178 ## gi|256843116|ref|ZP_05548604.1| predicted protein 20 10 Op 7 . + CDS 11242 - 11703 336 ## gi|256843117|ref|ZP_05548605.1| predicted protein 21 10 Op 8 . + CDS 11693 - 11938 270 ## gi|256843118|ref|ZP_05548606.1| predicted protein 22 10 Op 9 . + CDS 11938 - 12252 429 ## gi|256843119|ref|ZP_05548607.1| predicted protein 23 10 Op 10 . + CDS 12262 - 12540 397 ## gi|256843120|ref|ZP_05548608.1| predicted protein 24 10 Op 11 . + CDS 12512 - 12838 384 ## gi|256843121|ref|ZP_05548609.1| predicted protein 25 10 Op 12 . + CDS 12876 - 13376 214 ## gi|256843122|ref|ZP_05548610.1| predicted protein 26 10 Op 13 . + CDS 13393 - 13845 286 ## gi|256843123|ref|ZP_05548611.1| predicted protein + Term 13974 - 14020 6.3 + TRNA 14096 - 14168 25.6 # Pseudo TGC 0 0 + TRNA 14220 - 14290 44.3 # Trp CCA 0 0 + Prom 14217 - 14276 76.4 27 11 Op 1 . + CDS 14374 - 14862 243 ## COG1403 Restriction endonuclease + Prom 14884 - 14943 4.1 28 11 Op 2 . + CDS 15026 - 15226 285 ## gi|256843125|ref|ZP_05548613.1| predicted protein + Prom 15305 - 15364 3.6 29 12 Op 1 . + CDS 15476 - 16072 426 ## LEUM_1650 phage terminase, small subunit 30 12 Op 2 . + CDS 16062 - 17939 1473 ## COG4626 Phage terminase-like protein, large subunit 31 12 Op 3 . + CDS 17942 - 18133 172 ## 32 12 Op 4 3/0.000 + CDS 18138 - 19292 951 ## COG4695 Phage-related protein 33 12 Op 5 . + CDS 19279 - 19989 645 ## COG0740 Protease subunit of ATP-dependent Clp proteases 34 12 Op 6 . + CDS 19973 - 20158 191 ## 35 12 Op 7 . + CDS 20128 - 21216 1053 ## LEUM_1645 phage phi-C31 GP36 major capsid-like protein 36 12 Op 8 . + CDS 21239 - 21553 442 ## LEUM_1644 hypothetical protein 37 12 Op 9 . + CDS 21540 - 21923 371 ## gi|256843133|ref|ZP_05548621.1| phage head-tail adaptor 38 12 Op 10 . + CDS 21926 - 22327 564 ## PEPE_0998 hypothetical protein 39 12 Op 11 . + CDS 22330 - 22740 487 ## PEPE_0997 hypothetical protein 40 12 Op 12 . + CDS 22742 - 23470 851 ## LSL_0290 phage major tail protein + Term 23519 - 23549 4.3 41 13 Tu 1 . + CDS 23562 - 23963 535 ## gi|256843137|ref|ZP_05548625.1| predicted protein - Term 23778 - 23810 -0.6 42 14 Tu 1 . - CDS 23970 - 24410 176 ## - Prom 24445 - 24504 4.2 + Prom 24120 - 24179 2.6 43 15 Op 1 . + CDS 24217 - 31236 6890 ## COG5283 Phage-related tail protein 44 15 Op 2 . + CDS 31226 - 31996 558 ## COG4722 Phage-related protein 45 15 Op 3 . + CDS 31978 - 34285 1744 ## gi|256843140|ref|ZP_05548628.1| conserved hypothetical protein Predicted protein(s) >gi|256541445|gb|ACPV01000029.1| GENE 1 26 - 1336 1170 436 aa, chain - ## HITS:1 COG:L69353 KEGG:ns NR:ns ## COG: L69353 COG0531 # Protein_GI_number: 15672050 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 2 436 11 425 437 202 32.0 1e-51 MSIYFLGINGVIGSGAFLIPQTIYKDMNLMSVFITICAALTVSMVTLCYADLSSRFTGSG AAWLYSYHAFGRFTGYELGIYTWFLGCCTYAAEIVALLTILKTLSPVFSNHAVHYGIAIG IIVLIVLFTIINLFGRTIVKLVDNLSSAAKMITILIFIIIGAFFIHKMNFTPVIPKAATL GVGPYFKHFGAAFSVVFYMFTGFSFIPIAPKQMNNPEKNIPKVLISVMITVTILYALMML VAIGILGSKMVNYSTPIAVAFQKAVGDWGYVLVIAGMLISVIGVAFAGSFNTPSLIASLA NEHAMLPKWIGKKNKHDAAWVAILLSAIITMILITQSYLFLVSCIVLASFIQYVPSILAV IKFKHTNEFPNNGFKLPFGYVIPALALIISCYMVTNFTWKTILVGIVVGVLAAVAYFFIE KDEEKHQKYLSKMRNK >gi|256541445|gb|ACPV01000029.1| GENE 2 1561 - 2061 663 166 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01044 NR:ns ## KEGG: LCRIS_01044 # Name: not_defined # Def: lactocepin S-layer protein # Organism: L.crispatus # Pathway: not_defined # 1 166 1 166 166 287 98.0 8e-77 MMNKKIMYMAGVVLASLSLGAMTAQTVNAATTNPIRQGKKLNLTRKATIFNRKGEKVGHL KKGRVYKILGIKSINGNNFVKIGKNKFVKEGAFLPYIKDTAETINRIKHPSYVYDKNGQP IPGKFVKQGSKVKNLGHKEIDERPFIQIGENEYVKANNVLTVIINY >gi|256541445|gb|ACPV01000029.1| GENE 3 2288 - 3511 532 407 aa, chain - ## HITS:1 COG:SPy1488 KEGG:ns NR:ns ## COG: SPy1488 COG0582 # Protein_GI_number: 15675393 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Streptococcus pyogenes M1 GAS # 1 385 1 380 380 137 28.0 5e-32 MWIVKTKTGKFKFVDNYKNPLTQRYQEVSVTFGKNNNQVKKKAQLLLDEKIRKRLIDLQT GNTDITFEQLTDKYISVAKQQLAHTTWYRKKTTLQKINREWGTKIIAKNITSQFINKYLD SLLYDNPRHYSNGTVNSYKSCISGVFDLGIRYGYISKNPVNQVKITWKSQSKKRHEEIEN KYLEDDEYAKILAYCDKHNRQDLKDLFIWLYNTGMRCGEAIALQKKNILQDKDGNYFARV EGTLIFIKGEKKLSERYRKTKNAKTFSGDRDVYLPPEAKKIALDHCKGKKANDYIFTSKW YHNNYFSISSIDRMLKTIAKKEEIHKNLVTHIFRHTHVSKLAEQGWPLNVIQHRVGHSNS TITQKIYLHITNKVKNTAIERLKNFPDSQTILQEDKNKSKLKVVKNK >gi|256541445|gb|ACPV01000029.1| GENE 4 3687 - 4232 537 181 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843102|ref|ZP_05548590.1| ## NR: gi|256843102|ref|ZP_05548590.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 181 1 181 181 305 100.0 8e-82 MNKKILSLLAVGATLGEILSAPTSTVFASHTKSVKVAKKHKRAKKRTTHKKFKVPYKALA GAQPTEVVLTKRVKMFEYSPRLKRIFKQELSSGQVVTATQANNNAWIITHLGYGAVNKGS ICVVKGNGWFMTKTERDRRLQNARRKFNSSLENQVGSQEYNAMRNKLNADRNDIRNWVEQ N >gi|256541445|gb|ACPV01000029.1| GENE 5 4410 - 4715 189 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843103|ref|ZP_05548591.1| ## NR: gi|256843103|ref|ZP_05548591.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 101 1 101 101 168 100.0 1e-40 MSTTRQLKKILNDTRIENQQKMRIYDLSNPENNFLIVLKKRGLIDYIRVYLNNKHIGATH CSITKESRQKFIVQTLTSALASIITGVIVTLILVYVFHISK >gi|256541445|gb|ACPV01000029.1| GENE 6 4810 - 5358 160 182 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843104|ref|ZP_05548592.1| ## NR: gi|256843104|ref|ZP_05548592.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 182 1 182 182 334 100.0 1e-90 MKRFRTALFSLIAAVGLANCLATTHTVKATSFNYYSTKGFYYFKHKVVLTQPITIRKEHS YGHSFYTYLKEKKTLPAGTQIKILPYGDKGYYWIVLYGNTNKSTWVYPPKSTDWFDVYQK HIYIDTGLFHGAKKRINKSYEFTWNQYCKLVKMGMYTLMNHPYGPTHNKIMRQIKRWNVK II >gi|256541445|gb|ACPV01000029.1| GENE 7 5415 - 6446 493 343 aa, chain - ## HITS:1 COG:lin2373 KEGG:ns NR:ns ## COG: lin2373 COG4823 # Protein_GI_number: 16801436 # Func_class: V Defense mechanisms # Function: Abortive infection bacteriophage resistance protein # Organism: Listeria innocua # 2 128 3 124 298 60 33.0 4e-09 MRTDKPFKTIKEQIQILKNRNLIFLNEETAKNALSRYGYYEIINGYKDHFLNEKGNDELG FKTGTTFEHIYALYSLDKDISRDLLKALEDFEQTFKQSLAYVVSENISEIDSSYCAVSHF NTGKTYGRDRRGNLKCDRARLLKRFDKIKRTDNEPFHHYSANHNNIPPWIMVKGLTFGQF LYWYRLSKPTIRHKTILRLIGAQKIFSQNDQLLREFYQLYGDIFALYLSYRNLTAHGGRV FNNRSKKHALRKSPILYNSDRINVSNRAFNKGKYRSSIGMVIYTLGLFDNSQPAYYAYVW ILAELKNYLKKYPEDKDYLIKSMEFDIFPNLEYDLNHEDIKAF >gi|256541445|gb|ACPV01000029.1| GENE 8 6593 - 7222 565 209 aa, chain - ## HITS:1 COG:MT2793 KEGG:ns NR:ns ## COG: MT2793 COG1974 # Protein_GI_number: 15842258 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Mycobacterium tuberculosis CDC1551 # 86 205 98 213 217 80 43.0 2e-15 MRSNEEVVDYVNELRKSQHMSINELARETGLAKSSLSRYFNKTRGFPVNKVNLFAKALHV KPEEILGIQPTNMKPIDQTGMHAIRIPIIGTIACGTPILAEQNIDGYTTELFEEKPDGTL FALKCQGDSMEPKIPNGATVTVRLQPTVEDDEIAAVLVDDDEEATLKRVKHVGKQVMLMP ENKKYDPILLNEENPGRILGKVVKVSYNL >gi|256541445|gb|ACPV01000029.1| GENE 9 7375 - 7629 243 84 aa, chain + ## HITS:1 COG:L53055 KEGG:ns NR:ns ## COG: L53055 COG1396 # Protein_GI_number: 15673411 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 4 79 3 79 79 70 46.0 6e-13 MKELNLNLNRLKAERVAKGWDQSEFAHRLGMSRVSYWKRENGIVDISVNELAKMLQTLGY GKNDVSLFFTQSVPQKQQSKEATK >gi|256541445|gb|ACPV01000029.1| GENE 10 7626 - 7835 167 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843108|ref|ZP_05548596.1| ## NR: gi|256843108|ref|ZP_05548596.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 69 1 69 69 142 100.0 8e-33 MTIREACLKAKKEGRGITRKSYGQRPPMFLPTNTASCVLLIPFAEGSFKTKRWNPSLDDL IATDWYVYG >gi|256541445|gb|ACPV01000029.1| GENE 11 7832 - 8179 237 115 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843109|ref|ZP_05548597.1| ## NR: gi|256843109|ref|ZP_05548597.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 115 4 118 118 209 100.0 6e-53 MNYESLTIEAKTVLLTFYKAYCQRIKNGESRLNAREFQDFYSVRQEYFSDWTNIDDLLDA VNELSRQKWFNIEYSNNVPTIITLKTESIAFMQTRFSRGLKQAIDELSKIKSLIF >gi|256541445|gb|ACPV01000029.1| GENE 12 8277 - 8408 103 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTDEDLLEKMKKYIGRKLDQDSDPQAMKAIISEYMHMKGDDYR >gi|256541445|gb|ACPV01000029.1| GENE 13 8408 - 8644 106 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843110|ref|ZP_05548598.1| ## NR: gi|256843110|ref|ZP_05548598.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 78 2 79 79 140 100.0 2e-32 MANGWKTPKQIQEDYHLADKTWATWRKKCEESPYRDAIVRVSTRSTFIIEPRWQKFLIWQ SKNYEEKHMDPHLRGLQN >gi|256541445|gb|ACPV01000029.1| GENE 14 8960 - 9778 761 272 aa, chain + ## HITS:1 COG:no KEGG:LJ0300 NR:ns ## KEGG: LJ0300 # Name: not_defined # Def: Lj965 prophage replication protein # Organism: L.johnsonii # Pathway: not_defined # 1 271 1 242 244 140 36.0 6e-32 MPKIKKVYKTKYTVIDNTVIEDTKLSWKAKGLFTYLWSRPDNWNFYVSEVAKHARGSRDQ VMTGLEELETAGYLLRSRKRDKNGRLTSENEWLLSQEPNAAWIAETAEKKHKKASKPKVK KKKAFIKAVYNFKLPKSENPTLEKPMLENPTLLNTNQTKYLLNKIISLSLSKPLPKIRTV DKSPAIDYEREEKLNHIIFKFNQARAKYHTPIVSFSKTERDQLANAIGSKSLDQLEKQLE SIIDNVAIFAKQYPAGYFISSVRNLPEVNINA >gi|256541445|gb|ACPV01000029.1| GENE 15 9771 - 10070 221 99 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843112|ref|ZP_05548600.1| ## NR: gi|256843112|ref|ZP_05548600.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 99 1 99 99 192 100.0 7e-48 MHNDKSDKSKNISKKVLVYLPAGIVTTPEWLFRTFTTSSLANHGIREVTEGLRTYRLSGE IEAGSIEFVVQINNSDLVTRISADTPIVYKGFKKWEALA >gi|256541445|gb|ACPV01000029.1| GENE 16 10067 - 10390 447 107 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843113|ref|ZP_05548601.1| ## NR: gi|256843113|ref|ZP_05548601.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 107 6 112 112 196 100.0 4e-49 MKTKRMIDEQRILNIITAVKFVSYAPIDRLTDNQHLSGGAMTDKIRISALNYLIDNIRDE VGLSFGDVADNVLASSLKGESSRFAKEAMIMGWNFAKVMSVMEDKND >gi|256541445|gb|ACPV01000029.1| GENE 17 10383 - 10634 220 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843114|ref|ZP_05548602.1| ## NR: gi|256843114|ref|ZP_05548602.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 83 1 83 83 141 100.0 2e-32 MTELKRATVKCHGKFKTSLSINRNGASISFTAERKTVDLNRLAAMLKDGATAIFVSDQTE LPVDDDKDKPVKGQMSLLDDGTK >gi|256541445|gb|ACPV01000029.1| GENE 18 10643 - 10960 180 105 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843115|ref|ZP_05548603.1| ## NR: gi|256843115|ref|ZP_05548603.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 105 1 105 105 175 100.0 8e-43 MAKRHIKLFRYYKEWISVWKSQKIRDVTYVKYEQVQRWLKTWPVSDFLDSDRSNFDLDNL MIVTRKEAAIINHERLQIKGDKELSKTGALVAKLKLKIKEYEKNE >gi|256541445|gb|ACPV01000029.1| GENE 19 10953 - 11207 178 84 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843116|ref|ZP_05548604.1| ## NR: gi|256843116|ref|ZP_05548604.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 18 84 1 67 67 123 100.0 3e-27 MNNLKLYYFSQCKFFHDMYTEFTVLAESVDDAWVQIQNKAVEDCFTEKDVKMKDLYDFDN DRSHYEVKCYPLDKPTVIAHYSFG >gi|256541445|gb|ACPV01000029.1| GENE 20 11242 - 11703 336 153 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843117|ref|ZP_05548605.1| ## NR: gi|256843117|ref|ZP_05548605.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 153 9 161 161 309 100.0 3e-83 MERALVADALKKGKHPALEVKYWHTESIGAFTYRPVGQVEYIDAVIEKDGMFNCMELKVS MKDLHSKAAQSFVGNKNYLVCPLEMAKRIKTCNDSWLENHPTVGIIGWDEKNTFKVVKRC KIKYLLPENDWMTLAKGMISSMSKEMKGYGNEN >gi|256541445|gb|ACPV01000029.1| GENE 21 11693 - 11938 270 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843118|ref|ZP_05548606.1| ## NR: gi|256843118|ref|ZP_05548606.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 81 3 83 83 151 100.0 1e-35 MKIELKVGTRATVADFRNTYKARYLLLHGWRIDSVVKPMVAGLTNRVDLISVPTKYGQLV VKNEDMLTYVGNNVWDVRRDK >gi|256541445|gb|ACPV01000029.1| GENE 22 11938 - 12252 429 104 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843119|ref|ZP_05548607.1| ## NR: gi|256843119|ref|ZP_05548607.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 104 1 104 104 191 100.0 9e-48 MSGRWHFDNAKYINKDRPLDTNPDHYKNMDSKTESDYVEGVAIYTMDGSVFKFKDLTVDD IYDAINVHKDRWLNISNGGQVNLGYVICYQPWRFYKHDGYKKKY >gi|256541445|gb|ACPV01000029.1| GENE 23 12262 - 12540 397 92 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843120|ref|ZP_05548608.1| ## NR: gi|256843120|ref|ZP_05548608.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 92 1 92 92 158 100.0 1e-37 MQEQHKTKKIKIDVDDISQKSWGYGMQKIAKQIIAQAYDVTPDAIVITSTDLKRLVFQGY NAMDWNKKFALQLKITPRLKERIYGSNQKDNN >gi|256541445|gb|ACPV01000029.1| GENE 24 12512 - 12838 384 108 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843121|ref|ZP_05548609.1| ## NR: gi|256843121|ref|ZP_05548609.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 108 1 108 108 175 100.0 8e-43 MVATKKTTTRKKTTTKSEKEEMKAQSFFKYAYPNSSYVELLFTPFNANDLTNELKNNWNK DGIFSTLIGIDKKNETVNYGEDISKIQYWVPFAVPAKYVRLIRGYQVE >gi|256541445|gb|ACPV01000029.1| GENE 25 12876 - 13376 214 166 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843122|ref|ZP_05548610.1| ## NR: gi|256843122|ref|ZP_05548610.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 166 16 181 181 316 100.0 3e-85 MHLVHICEAKYGSISETPEKDPTFIKIKKLCGSNKATGLTIDKLEKIVEAIEAGYTRTYI ARRFHVTGSTVKKVRIAYGLKPKPVWKYILFKDGKPIYFIKSKRRDLTAIFKRNFYNKKV TESFLLNNGYKLKVCNTIWQNIPIRAYYVTPDHKKCIQKIDDKYRE >gi|256541445|gb|ACPV01000029.1| GENE 26 13393 - 13845 286 150 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843123|ref|ZP_05548611.1| ## NR: gi|256843123|ref|ZP_05548611.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 150 1 150 150 263 100.0 4e-69 MELDIDVEKTLDKTRNFLEKDLRKLASLADRDVTSLSSPQLSFSVSHGSAKKSDDILIDH WSADTALIAVHAAAHHIPDLDHEREIFILCYFKYYSDKDLVNRFTISRFSLHRRKNHALL EFARRLDVQKSNPDHNCDWLESLIVKQSDK >gi|256541445|gb|ACPV01000029.1| GENE 27 14374 - 14862 243 162 aa, chain + ## HITS:1 COG:L39564 KEGG:ns NR:ns ## COG: L39564 COG1403 # Protein_GI_number: 15673383 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Lactococcus lactis # 5 136 6 147 171 63 28.0 1e-10 MQLKKCRYPTCNQLIPFDQKNPFCKKHGKNWHQRQFNYQKTNYKNYNKYQRDPVANAFYH SAPWRRLSADLRRKSMWTCECCGHTYDAKSFLVVDHIIPFKVEPRLKLDRKNLWVLCKKC HFWKTKLEQQIYGTSLIANLDTSKAWPRKKIQNWILAREKSK >gi|256541445|gb|ACPV01000029.1| GENE 28 15026 - 15226 285 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843125|ref|ZP_05548613.1| ## NR: gi|256843125|ref|ZP_05548613.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 66 1 66 66 81 100.0 2e-14 MFELGDIVKDLKTGDKYVYVYYGYGNDIELIDRDGRVANKSDNDFDLFDEIGIDFNKVIK VGKLKL >gi|256541445|gb|ACPV01000029.1| GENE 29 15476 - 16072 426 198 aa, chain + ## HITS:1 COG:no KEGG:LEUM_1650 NR:ns ## KEGG: LEUM_1650 # Name: not_defined # Def: phage terminase, small subunit # Organism: L.mesenteroides # Pathway: not_defined # 1 195 1 183 187 124 36.0 3e-27 MANIKHAGRKRKLNVGDDDRPYQKRQSKKFKEMNKDLREVQPTPPSHLDKHGKWLWRQIV PELQKIGNVKYLDQLNLAALCSAYSDFRTAEEEIAKVGPYVMALVDVPQVLECQNAKGKK VQKIVKIPKEVQDKSRPNPMFSVKNTAERTMKTLCADLGMSFNARAAANIESENYHAQNK NSEKSSSSPLGLVKFNGV >gi|256541445|gb|ACPV01000029.1| GENE 30 16062 - 17939 1473 625 aa, chain + ## HITS:1 COG:L37002 KEGG:ns NR:ns ## COG: L37002 COG4626 # Protein_GI_number: 15673381 # Func_class: R General function prediction only # Function: Phage terminase-like protein, large subunit # Organism: Lactococcus lactis # 15 603 29 616 657 370 38.0 1e-102 MEYDLTEVKNVKKYVLESDFKAKFTNVANEVTDFGTRFASDVLLTDKYITGRDVQLAAFR HLNDLSLQGTDEFPYEYSQKYVDAIEYFTRVLPNPLDLSQKIKPYGFESFLFDSTIGWRD LETGGSRFHVVHFSTSRKQAKTFCAAVLLNFGYFVMGLQGSAQDFLVASVDSEHVNKLFD YISLQARQIIELPDFHDECKAQDVEVQSTQIIGHKNRNIVRKGTASGRNSFDSKHDLFAI FDEIGGLDPKYDQKISDIMMGQGDNPNRLLVKISTAYPNPNCAFKHEEDSLRKAIETDSH DADDTFFLNFAQDNENEVFKPELWEKSNPLLHDKESHDQRLTGLIDLRNNLERQGKLSDF ANKSLNMWSRQFQDSYLPLRDIQKNIVSDFNIHGRDVFIGIDASMSNDNTAFGMIFPYDD HKFHIEQYSFIPFAQAKTIEAKEKQDSLSYRELAHQGFCEITNNASGTISYEQVWNWLER YISSNELNLKAIVVDPAYLTWFANRVENYQPNWPYIPFKQTSLQLNQPTKGLQKAFIDEN VSLLKDPLLIDGLNNAVLVADKGGMVKIDRQNRVSQHIDTADAIINAYSQAQNYFEDFND GKDMKLLDTMNQQQRNNYFKGLFGV >gi|256541445|gb|ACPV01000029.1| GENE 31 17942 - 18133 172 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVNKFWNCLKKIYLFYIQAILFIAGFVLLNIACYRINVTAGLFVSGFTLILFGLIINSDQ EKR >gi|256541445|gb|ACPV01000029.1| GENE 32 18138 - 19292 951 384 aa, chain + ## HITS:1 COG:L66478 KEGG:ns NR:ns ## COG: L66478 COG4695 # Protein_GI_number: 15672452 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 35 365 30 359 359 177 34.0 3e-44 MGLLSRASPYKIKNMMTTVPATHGLVFTQLIGDQPLNLVSTNQALLNSDIFSVINRISSD IASARFKTADQYVYNLLNTPNRLISRFSFWQSVIIQLLLDGNSYVPIKGMSLEQRRPSEV SEINVLDDYQGLTYKITPFNGEKEFTLTQDQILHFRIMPDSRYQYMIGMSPLESLTYEMT ISADSRKATLNSIKNQISPIGILTVPASQLNDEDREVARKSFEKANSGENNGRLMVLTAD SKFSQLDVKADVFKALNENANFSASQISKAFGIPVDMLGGGQSTESQHSNIDSVKGNYIS DLNSYINPILDELKLKFNCPDLKLDVKSALDVDDSLTINQVNSMLQAGAIDQEQAQQLLK KSGALPLDLIPFTSSEGGENDDQN >gi|256541445|gb|ACPV01000029.1| GENE 33 19279 - 19989 645 236 aa, chain + ## HITS:1 COG:L34899 KEGG:ns NR:ns ## COG: L34899 COG0740 # Protein_GI_number: 15673378 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Lactococcus lactis # 1 227 2 232 235 177 46.0 2e-44 MIKIDVKGDVVDNDTGQFFDYWGMQCVSPQMVKDSLDKAQGDEVELDIASYGGDVFAASE IYSMINQYSGKVTGVIQGMAASAATIIAEACDHLVISPAGQMMIHKASTAGAGNSDDFTH TAGVLNTTDRTIAGIYQNRTGKSEEEVLNLMKQETYLTAKDAVEQGFADEIMKKSDKVPQ VVNGLHEIPSKDAIKKFMNLIKNQKSTVSDSKRSENDALFNAKLAIFKGESNGNII >gi|256541445|gb|ACPV01000029.1| GENE 34 19973 - 20158 191 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGTLSKDQIQTAYMQASARYADLNNKATVGLVDHNLTKMTTIKLFKTEIKLRWNEMVCLI N >gi|256541445|gb|ACPV01000029.1| GENE 35 20128 - 21216 1053 362 aa, chain + ## HITS:1 COG:no KEGG:LEUM_1645 NR:ns ## KEGG: LEUM_1645 # Name: not_defined # Def: phage phi-C31 GP36 major capsid-like protein # Organism: L.mesenteroides # Pathway: not_defined # 3 330 52 376 387 291 49.0 3e-77 MERDGLLDQLKNWDTNHPGAGKPTESKATNLKNTHKTKEEVAAEARKRINDFVHAGRFLN AGDTSTTGVTRPTVSPTIPEQIIYNPSAEVDSVVDLSTLITKTPVVTGSGTYPVLKRADD AFKTVDELKENPEMALPEFTNVNWKVDTYRGAIPISQEAIDDSAVDVSGIVTRQIGERKV NTTNAAISDKLKQFSAATANRDNLVDAFKWLINVGLDPAYHPTIVVTQSLYNALDTLKDA QGRYIFHQDMTSKSGDTLLGLPVKRVGDTLLGQAGDAKAFIGDLGRGLFFADRKNINMMW QWDNIFGWYLAGALRFGISMADANAGYFLSADIPTQDIIKPTVEVKKNPDEDKKQETPPI GN >gi|256541445|gb|ACPV01000029.1| GENE 36 21239 - 21553 442 104 aa, chain + ## HITS:1 COG:no KEGG:LEUM_1644 NR:ns ## KEGG: LEUM_1644 # Name: not_defined # Def: hypothetical protein # Organism: L.mesenteroides # Pathway: not_defined # 2 95 12 105 110 80 46.0 1e-14 MTDSTGVTVDDLRDYLASDAPDEFLQRLIDEAEYDAHHIVGDDIPIELCRKNRDFNQAVR ILADYDNASRGAQDSQAHAYPRSFLYRMNQCKWTLRRDAQNGSE >gi|256541445|gb|ACPV01000029.1| GENE 37 21540 - 21923 371 127 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843133|ref|ZP_05548621.1| ## NR: gi|256843133|ref|ZP_05548621.1| phage head-tail adaptor [Lactobacillus crispatus 125-2-CHN] # 1 127 4 130 130 257 100.0 2e-67 MALNKFTGRSFSRSIVFGTSVKTRDENDGSEKMTFKRLLGPFHCAPYIRTMHQNFELMGT KYSNTRQVSVNHQWVGSKLTRKMKFALLDGEIYQIVDNGSDQTDNPNGVDILSLQLAEDI EMPEGGE >gi|256541445|gb|ACPV01000029.1| GENE 38 21926 - 22327 564 133 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0998 NR:ns ## KEGG: PEPE_0998 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 6 133 8 133 135 104 50.0 8e-22 MASFEDQLNNYRKQLSKLVPNTEQKLKANKAGAEVYQKRLAEVTKAKHYSNKKDEKYGHM ADHIEISDKNSDEVADGSATVGWPNRYHAMNAMRLNDGTVHIKADHFVDITREESNDAVV EAQAKALGFKKGG >gi|256541445|gb|ACPV01000029.1| GENE 39 22330 - 22740 487 136 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0997 NR:ns ## KEGG: PEPE_0997 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 130 1 122 126 70 37.0 2e-11 MKLPIVQVADLLEAANFGWVDPEHIYTTNVTPDEDDSGKTTFIRIQDAVGRMAYYANDVA FAQVVGVEVQIFFSNKWSKLTKDENLTIYDAKVAVLKKLQANGWKIQNPLNPDTPDPDTG QKTATIYVTKILEMEN >gi|256541445|gb|ACPV01000029.1| GENE 40 22742 - 23470 851 242 aa, chain + ## HITS:1 COG:no KEGG:LSL_0290 NR:ns ## KEGG: LSL_0290 # Name: not_defined # Def: phage major tail protein # Organism: L.salivarius # Pathway: not_defined # 12 240 4 230 234 125 35.0 2e-27 MADTQTTQELGSSSHGINLVTFALLNPSTGTVLTGPDGLSDNGIKPIYQGVQGATQAEYQ NLEREGTKQYANDTPKRVTRPTQAPTANLTFLDIAWDTLNKLTGYEQGEDGGYSLSGGTK PYFAMLTRATFLDGSSLYEAFACATAILPTGQHQTDNDSEQDANVALTVDAFQPINPDVF KLKNGHQMPYRRWNSLDSKFDPEKMMAQVFPGYKPDDTMKIVVPTWNGTSVATPSVQPKS DK >gi|256541445|gb|ACPV01000029.1| GENE 41 23562 - 23963 535 133 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843137|ref|ZP_05548625.1| ## NR: gi|256843137|ref|ZP_05548625.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 133 1 133 133 184 100.0 2e-45 MSKIIIDTKILPIKVDQVEVVPTGAVGDISRETMIKLLESADPKENEEYVDFIKRQADAK KAALDLLKLVLGLSTKQIDKINSELEESTIDNYVGYVESLLQGLATGSYADFEKAQKDDG EEVTDPKSDEDDD >gi|256541445|gb|ACPV01000029.1| GENE 42 23970 - 24410 176 146 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFLPKPSYRDLDASRALPTDLARASLAFHALVVALIAVSRDFSEFEALIVLMSIVVDIIL LIFTIFTSFLPINQPKCRPDRKNFVQYLKMALKALKLRILGLHLEYLKAPLDQNNQYYRL ILDPYHALKTCLALVAYNEALEPLNR >gi|256541445|gb|ACPV01000029.1| GENE 43 24217 - 31236 6890 2339 aa, chain + ## HITS:1 COG:L72137_1 KEGG:ns NR:ns ## COG: L72137_1 COG5283 # Protein_GI_number: 15672461 # Func_class: S Function unknown # Function: Phage-related tail protein # Organism: Lactococcus lactis # 3 721 17 766 1076 237 25.0 2e-61 MVKISNIMSTTIDINTIKASNSLKSLDTAIRATTNAWKANEARAKSVGSALEASKSRYEG LGKNIENVKSKISYLTEQQSKLDRTTQQGQEEYNKYANKLASAEKQLASMTAQQDRAKRS MDYQKTGLAGLQSSYKLLNELGTSRIQRLEAEGKQYEANKTKLSTYRASIESLTKQQKLQ ADELVRIGKASGEASEAYKRQQIRLNQTSTTLAKTKNEMNELSGSMRKANPTFLDRIKSK LGSVNKEAGQTHKTFKEVFAGSFIGNALSNAVSNLTGKLKGAVTEGMALNAATAKINARF KSMGMSTKTIADLDKQIGDLKAQTNMTGDNVANLQTKMLNWSNIGIKGAMQMTKMIAGVG DSSKLSGDQIEQMGASLMRVGSTGKVTYSALNRVTKSAPTFMAQLAKGAGMSEDKLKSVL KTGKVTQTQFQKWMASAAKYSDTAFKGFSSTQGGALKFMQVRWQKLEQTMTKPLFDAKTS GLQALKDIMASPELLKGATAIGNALSTTIGYIDKHKKDIAGITSDVTHIGTELGKDMWKD VSGVIGDIGKSFGLIHGNTKKTEDPLHTVKLTMDGLAKNKTAIQWISKAIIAMAAVKGLK AVTSPLTSLATMKIGKSSLIGLLAKGGTGLFKGMLHPIKNATDAMDTLKIHMWNMHDRIE PLTKAFKSGFTKIGKFGQSSWKVITKAWGKANDLGSKAGKGIVKGFKATGHGLASAGKWS WAKLKSGFGAAKSFGQTLGKQLVAGFKKSVQVGKGLFTQKGGAGHLNGLLQSAHSAGGFK NLTTAGKIGTSAAGIGVAVDSATSIVKAIKDKVGSRKQYEDVGTAAGKGIGGAIGLWFGG PAGATIGAKIGGIVGKWGGDAVKNFQNGWNQKKPPKNFWSLENLGWSTHDAFSKIGKWGS DVGKKFGQSLNKGKSFVKKNSKELALTAVSPIAGIPALLYKNNPKFRKWANSVGKNFKQG FNTAKKSVTNFNKSVSKNVSNFNKSVGKKYEQITSGIGKTFKKGWDAAYKHASKGTKQIM RSTASFAKKYVKTQKKANSDTVKNFGSFSKRLKKNHGDLFKTIGQTAKTQLKIEQKRWSS NWKNIKTTTNGIWKGLSQNVSGMYKKLDTATHGGLSKVFNGFEDFGKDIKNFWDDLWKGI TKTFDDTVKGLQDAAGNVQKFFTGKLKVGNLHLASGTDWKKKYGYPAILNDGHDSPATGN REGLIHADGSLEILRGTNIKRWIFPGEDVINAHDLATLFGRGVHLANGTVKLRNNKSSKL LSKNNSLIERALKLYKAEVKKRDKRNKDRKDHRNKLDRKREQKNSSSKAERAKAAARAKK EQEQLKKLGDRISSALKHKNGNEVHRLTAEFNRLTKKYSADKKAAKKPDPHAGKVLVDQG LLIGAKSRIGHSVYISKKLFKQLIANLNKKSKKTKRKKTRSTRKRRSTRRRTTRSTRATR RRTTTRRRSTSTSSGVSIKASVSGGSAVTSLASAIKALKSKSVKITAKASGTKAVVSLAK AARKIKGSSHKVAVKAVGVKALTKLYKATKKIKGKTHKVRVKTSGTKGLKSLQKNVTSVH KRIDSLAKATKKDKFGKDIAKQAEEAVKSLKGKGNFAKQFESMTKKFNKDLKNMTKNSKK EFKSMWSDIEHQSKTGQSRLTHEMSTFSSHYKKDWTSLENGVHRTFGQFWAKMKTAAGRG VNNVLRIVNSAVGKIDNVISDFGGSKTAVKQVSLVHYASGTGVFGSSMRRAITGPTLAVL NDGNDSPETGNKETIWNKATNTFGVVQGRNTPMLLGPQHEVFNATESKLLGFTHFASGTG ALKKLYEIAKHNWEHPTKTGQSMFNAVSGLTGAMKDLAQGMRSKSENQGVAWWSQLWKMV EDKVNDDDLGPASGLLKAVEELGQNKHYSQGKRMSKFFADCSSLVSRALSKYYHANWATP NGWALTVAGLWQHAHRISRSEAKPGDPVFWLPDTHVGIYAGHGRYYSAYGPNDGGPVGMQ AVAPGATFGRFNGLNTEGSKSKGVKIKANTALQKKIRGQVGRGFWKTIQKIADKYGENTG MVGAFKLGGDVTQRARAIANALKKAVPGATREGLAGIIGSWVFESGGLNPSAINPNGGAA GLGQWLDRKPLLMAYARRLGKSWKNPSLQLDFALHGDDSQDTATFKRILKSHGSATSLAY AFSREWERGGFDAQHASAAESIYKALHGYANGGIVNTPQLAMIGEGRGPETVIPWDISKR SRAYQLMTATLAQFKHEDGNDAADRRNSKSDEESREFRETVVFLLQQLVEQKDDKKEKEE HDFMQGVLLLLRQIFNKSSVANIKLTTPAGRTLWEVVEPFSKAEQRAAMIKLRRGLSGR >gi|256541445|gb|ACPV01000029.1| GENE 44 31226 - 31996 558 256 aa, chain + ## HITS:1 COG:SPy0698 KEGG:ns NR:ns ## COG: SPy0698 COG4722 # Protein_GI_number: 15674760 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Streptococcus pyogenes M1 GAS # 10 252 7 234 238 61 23.0 2e-09 MDVEYSGLIFQGKNSRDLGFTVQYPFNLVHPTADLDATHIKGRSGDFLQDDNSYQNITET FTVDAVRPSNVSQFDYERTLTDWLASPVTMTQRKYQYLQFDADPEYAYSAIQKDPFSLQW DESDPYHATGTIPFYCEPFQYRVDGIEYIPLPDTGTVYNQESRIAVPNWHFIANGTFILY VNGLPYEFDNMSGEFWLSGDTQDTYDKDNKLYNSQVKMPNLSVPILQPGKNTITITAESG ATITKAEYMPQWRRLI >gi|256541445|gb|ACPV01000029.1| GENE 45 31978 - 34285 1744 769 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843140|ref|ZP_05548628.1| ## NR: gi|256843140|ref|ZP_05548628.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] # 1 769 1 769 769 1486 100.0 0 MEEVDIVKVTIGKIPEIIYTQYDELLSFPHLYKSINSDFTTPGFTLSDALTCDVTVNFNQ YPTLQMTYPRDGNHMEEIQKDRWILEDCGYKFPHQKFKITHVTQELDQVVVNAEHLLATL NDCTLPDGFQLVNASPQDFMNQALNQMVPAKDIIFDSKVSKVSNVNVEGAQQVGSLLINP DQEGDQAVNSIPGLYGGELEFDNNEIHHSEHAGMDTGIVIDYGKNMSEFQHDISTENMWT GAVFIAKYIPGQAVAKADWDGWASWSSDYSNVGIYAAGGTVEIFNSPVEGHQAIGTLSTG MKLHLGTPIHDGDFTSDGKYQINTVNGDDWYPVAPEDGGGFVDARWISFDKSGSYMVNDI TGSLTVQAQDPNDSSGAGSRVSMSGNAVVAYKPGGEIHVYKSPEIGPDHVRIPGWTVKNG TSIHYDMVERNSNGDMWYRIGPGQWLYGPHLSLTQNGAYQSYSNSGYGYIKKNQTKYHWD SKHHKMVATTHTVTTGGNSKNHKSGRYWASKKKKVTVHAHTGRVEIDKTIVQGGKTYHHT KYGWVSSGSIEYKENGSIKPSSTDQILKDRLKDHSKVEIYATPDKNNALNWSIPSGTQLV ADGHEAKGGDGKTYVEVTYAGKTGWLPEDNIDSDKSDLVSPDANDDDSSNPNPNVDTSHN EVTVKVGPLYADGFGNDPNIDKVNTVDVSSYLKHDDQDLSGQQPDGTFVATADDIKQVTD IGKNYIIEHKYGHIDVQDTISYQEMSALNANKTQLSLYDYVTVKYDKYH Prediction of potential genes in microbial genomes Time: Wed May 25 05:13:47 2011 Seq name: gi|256541444|gb|ACPV01000030.1| Lactobacillus crispatus 125-2-CHN cont1.30, whole genome shotgun sequence Length of sequence - 26320 bp Number of predicted genes - 33, with homology - 32 Number of transcription units - 11, operones - 5 average op.length - 5.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 1438 1001 ## gi|256843141|ref|ZP_05548629.1| conserved hypothetical protein 2 1 Op 2 . + CDS 1450 - 1680 198 ## 3 1 Op 3 . + CDS 1634 - 3274 1579 ## gi|256843142|ref|ZP_05548630.1| predicted protein 4 1 Op 4 . + CDS 3291 - 3761 394 ## gi|256843143|ref|ZP_05548631.1| predicted protein 5 1 Op 5 . + CDS 3762 - 4109 281 ## gi|256843144|ref|ZP_05548632.1| predicted protein 6 1 Op 6 . + CDS 4111 - 4677 403 ## SPJ_1850 PblB 7 1 Op 7 . + CDS 4726 - 5016 354 ## gi|256843146|ref|ZP_05548634.1| predicted protein + Term 5036 - 5066 1.0 8 2 Op 1 . + CDS 5097 - 5744 721 ## gi|256843147|ref|ZP_05548635.1| predicted protein 9 2 Op 2 . + CDS 5744 - 5905 161 ## gi|256843148|ref|ZP_05548636.1| predicted protein 10 2 Op 3 . + CDS 5868 - 6287 291 ## gi|256843149|ref|ZP_05548637.1| predicted protein 11 2 Op 4 . + CDS 6299 - 6550 124 ## gi|256843150|ref|ZP_05548638.1| predicted protein 12 2 Op 5 . + CDS 6540 - 6992 670 ## gi|256843151|ref|ZP_05548639.1| predicted protein 13 2 Op 6 . + CDS 6982 - 7884 768 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) + Term 7914 - 7958 11.1 - Term 7902 - 7945 3.0 14 3 Tu 1 . - CDS 8120 - 8995 970 ## COG1284 Uncharacterized conserved protein - Prom 9018 - 9077 6.2 + Prom 9004 - 9063 5.4 15 4 Tu 1 . + CDS 9084 - 10283 1100 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase + Term 10293 - 10327 2.1 - Term 10281 - 10315 2.1 16 5 Tu 1 . - CDS 10320 - 10985 388 ## COG1272 Predicted membrane protein, hemolysin III homolog - Prom 11027 - 11086 9.9 + Prom 10979 - 11038 5.6 17 6 Op 1 . + CDS 11117 - 11950 1023 ## COG1307 Uncharacterized protein conserved in bacteria 18 6 Op 2 . + CDS 11953 - 12183 218 ## COG4479 Uncharacterized protein conserved in bacteria 19 6 Op 3 . + CDS 12232 - 12657 336 ## LCRIS_01050 putative protein without homology + Term 12658 - 12702 -0.7 + Prom 12662 - 12721 6.6 20 7 Tu 1 . + CDS 12823 - 13179 75 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters + Prom 13181 - 13240 3.7 21 8 Op 1 . + CDS 13407 - 13826 425 ## LCRIS_01051 Na-H antiporter 22 8 Op 2 8/0.000 + CDS 13847 - 14686 985 ## COG1161 Predicted GTPases 23 8 Op 3 2/0.250 + CDS 14683 - 15435 727 ## COG0164 Ribonuclease HII 24 8 Op 4 13/0.000 + CDS 15498 - 16346 808 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 25 8 Op 5 6/0.000 + CDS 16416 - 18527 2011 ## COG0550 Topoisomerase IA 26 8 Op 6 5/0.000 + CDS 18550 - 19866 1422 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation 27 8 Op 7 4/0.000 + CDS 19866 - 20774 610 ## COG4974 Site-specific recombinase XerD 28 8 Op 8 24/0.000 + CDS 20783 - 21307 721 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 29 8 Op 9 . + CDS 21319 - 22716 1246 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 + Term 22733 - 22782 5.4 + Prom 22760 - 22819 7.9 30 9 Op 1 . + CDS 22876 - 23772 863 ## COG2017 Galactose mutarotase and related enzymes 31 9 Op 2 . + CDS 23790 - 24611 622 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 24617 - 24670 3.4 + Prom 24766 - 24825 5.9 32 10 Tu 1 . + CDS 24899 - 25591 745 ## LCRIS_01064 aggregation promoting factor + Term 25644 - 25698 13.2 - Term 25636 - 25682 4.2 33 11 Tu 1 . - CDS 25688 - 26254 518 ## LCRIS_01065 integrase-recombinase Predicted protein(s) >gi|256541444|gb|ACPV01000030.1| GENE 1 2 - 1438 1001 478 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843141|ref|ZP_05548629.1| ## NR: gi|256843141|ref|ZP_05548629.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] # 15 478 1 464 464 894 99.0 0 INQKEEVNGFVWDGLAQHYKQITVGRLPESWQHLLLQQAKDQTSSAVGAFTRRTQGWLNR FENMMHSERSDRRAKENAMMEDLGMLQQDVTWKDDKGKEHKLKDVFLESRKEFEEHFQQL DDDASDIKSWIDQPGEGIIQAIPNWQAPQQLTARSSNGGKMVFGGNGLEFYDERSQKLLT GMDSRGKLYADSIEGVKVNAMEIDALLMHGNLQSEDPDGSMKIYIGTQNPGSTLNPWKDG RVIWVKSTNYSSMVSSGQIATTSGARTTRIHPSAITVGYSGNDDMNEVLTQDNFAGHAYY RIKSWVRAWIADWITIRGTKHWIWKGSDNVNMGKLRNLKDQGKNNYTYEPGSNDDWGSEE VGSLDGIDLGSLVFDTDMQSLNQQWQNSFNDLRNGYTNITVPTTPDIPSTGQITIDLNKT SSTAGMLNYHQAVRVGLSNDIHGNYPEALGTMMGGNDGHTYVMKLYTNTNRKHWYRVD >gi|256541444|gb|ACPV01000030.1| GENE 2 1450 - 1680 198 76 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNDKVTETLAINTGNMIASLNVQVAKLQVALKEQKQVNDSLKEENDQLKIENAALRKKVK ANESSANSTNNQQDNK >gi|256541444|gb|ACPV01000030.1| GENE 3 1634 - 3274 1579 546 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843142|ref|ZP_05548630.1| ## NR: gi|256843142|ref|ZP_05548630.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 546 1 546 546 872 100.0 0 MSLAQIVLTTNKTTSNVGDYVRKIGQGERGQILPVVITGANGEAYDLSDKNLVFSENKDS GKYVVDDGKDSRSGKFTLTDPQNGKFTYTLQEQVYSESGTAWFDIINADGTVLDTTVSFR FVVIPAPTLHVNNDNYSSTLEALQAHYQGVIKNTETQTQNLINSLTDKINQAISNGQRDV ANELTDMRTKLQDIQNRENGLIQNWTADFNARKADFDKLKSDWQAQSKAISDSYQAKINE INTQAQSQHNDIQAKADQQLKNNQSANDAEIAKIKSDAQTQHDQIEKAKNDAIAQISSQR DAAISKANADFKAKIDAFQKDYDVWKSSMLVDFTKQLADIKANISNDQSTLKDFDKQLDY TKEELTAMAKQLDSLDLTRFVTGDQFKEAMAKKASGLKVMGLGGEYVMAVDQSDQNINGL PNGVQGLADIGVLSGALQVLADAILDKNHYTKPEVDKMVNDAKNAIMGVVDAKANAGDLN NKADKSQIQSLSSQLESYKQENDNLKNENSQLTNRVQTLENKQFIAHVASEDQVASQTAP IVIVDD >gi|256541444|gb|ACPV01000030.1| GENE 4 3291 - 3761 394 156 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843143|ref|ZP_05548631.1| ## NR: gi|256843143|ref|ZP_05548631.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 156 1 156 156 288 100.0 8e-77 MAKIILKDKDGKQTEAVSKQEFDSRVNTTNALYSNKYTPYDLHDVLSNEYGDNTLGVINN QFGSVIGGVSLLGNFDSLLVFGGNDVRHALDVGTFSHQVRVSTRTNSSFWQDDLVFKSDY DKLVARVSALEKQIGGVLSKLLAHLNNHLSIRKVAF >gi|256541444|gb|ACPV01000030.1| GENE 5 3762 - 4109 281 115 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843144|ref|ZP_05548632.1| ## NR: gi|256843144|ref|ZP_05548632.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 115 1 115 115 223 100.0 2e-57 MRKVFIDKEEVLGIKSEENFDLNEFFTGIKMFDNSVPKNSPENVRPNGLVASFRISPNNL DVIQFFVDIRGLFYFRSYNAMTGYGWQWSAWTQIGGVLTSLYTRIRSTFTSLEVA >gi|256541444|gb|ACPV01000030.1| GENE 6 4111 - 4677 403 188 aa, chain + ## HITS:1 COG:no KEGG:SPJ_1850 NR:ns ## KEGG: SPJ_1850 # Name: not_defined # Def: PblB # Organism: S.pneumoniae_JJA # Pathway: not_defined # 45 188 1614 1760 2108 65 32.0 1e-09 MSIFIANKEIAERKDIINPNLIDNSATLDSFFNAFGDSPQIDDAKYQGLRVINQTNIQWH GSGPYMYVQKGTYTFSCYAKTSGQNVKTIYIQLNIGVDDKDKHSATVNTQFANIPSVSDW SRFNYTFVVNEAGYIHPRIESSGENDVLLLAGFKLEKGNIATPWCPSLNDLALMSTEIQA LKDKNGGG >gi|256541444|gb|ACPV01000030.1| GENE 7 4726 - 5016 354 96 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843146|ref|ZP_05548634.1| ## NR: gi|256843146|ref|ZP_05548634.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 96 1 96 96 177 100.0 2e-43 MKDLAVKGQLLSGLIFKGQIAGDSYDANNLFENGIWLITNMTIKNANNITWAFLVSLKFD GNTTLQFLVQTDAAVTIFKRKLSPSGYTPNSEWMKI >gi|256541444|gb|ACPV01000030.1| GENE 8 5097 - 5744 721 215 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843147|ref|ZP_05548635.1| ## NR: gi|256843147|ref|ZP_05548635.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 215 1 215 215 325 100.0 1e-87 MTENQPVANTAEKQTINTAIQDKNSAETEQQNVTNNGQSGNTEQKSKTLNDVLPGEGTNL VYISGMLQGQQVNCEGPIEYTRKLDHPQWPFIPALPQYDPSKCKTPTFDWGKGQWKDESE EARVKQLNDLTEKVASITTDVGKIQETQEAAAQEKEASDKKDDQVFKLISAMNVQLGVIN TKLSQVTSKDNEASTKPAVSAQNTQNGTTTEGGAQ >gi|256541444|gb|ACPV01000030.1| GENE 9 5744 - 5905 161 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843148|ref|ZP_05548636.1| ## NR: gi|256843148|ref|ZP_05548636.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 53 1 53 53 91 100.0 2e-17 MFEIYKMEFDIGIVTAVDLKSYIGMGILSQPDYERIVGDESHEESNSTSEVQA >gi|256541444|gb|ACPV01000030.1| GENE 10 5868 - 6287 291 139 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843149|ref|ZP_05548637.1| ## NR: gi|256843149|ref|ZP_05548637.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 139 10 148 148 244 100.0 1e-63 MKKAIQRLKSKLNVRNSEILIGLFILGKGLWLYHDSHYFIYPPQFQNIENSRYIDLGLIL LGALLMITAFLVPYMKTTKRKIQLIIVSKVFLVLAGVVCMVLALLQITHGIFTPFYRMGH SAWGDFIIFCFVYLTASDA >gi|256541444|gb|ACPV01000030.1| GENE 11 6299 - 6550 124 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843150|ref|ZP_05548638.1| ## NR: gi|256843150|ref|ZP_05548638.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 83 1 83 83 134 100.0 3e-30 MKDIGNVIGYLITAVGGLISAITLFYKAFSSSKQNTLTSMLAEKDNEIKQKAEDVELYRK RWLKVEKENDRLKKKLEELENDD >gi|256541444|gb|ACPV01000030.1| GENE 12 6540 - 6992 670 150 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843151|ref|ZP_05548639.1| ## NR: gi|256843151|ref|ZP_05548639.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 150 1 150 150 247 100.0 2e-64 MTIKDLLDLGLNIGIYVVALVAAVYTKNQAKINKATRAGKIQDLLGSYAKKAVYLAEDAG LDSNDAKHQYAKELIVQALSWAGIKGVTVGMIDGAIKTAVSAKNLAYDTVGVDDPGLSYD VDDKDILKPVDQLATPVTPELTKDVTADGK >gi|256541444|gb|ACPV01000030.1| GENE 13 6982 - 7884 768 300 aa, chain + ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 5 226 154 361 444 105 31.0 1e-22 MASREYLVDVANYQSTSMASYHNAGAKQIIAKLTEGQSYINPKAHEQIKSAHAHHMFVHV YHFATFSNSVAKAKLEGKHFVSRAKHENISKKRFLYCDWEIGDDNSVVGSKASNTKAILA FMKVCHDAGYKVGLYSSASLLRSSIDIAKIIKKYGTCIWVAAYPRSGAVSTPDFNYFPSM DGVAVWQFTDNWHGLNVDGNISLIDLHKDSSAKKPTSKPVEKPKPKPVKKVSEVYAPIIH GDPKWNIRLLDGKGHYMRYLKTNSNWKVLDTKVIRGMKCYRLGTDEQWAPAKYFKVTKYK >gi|256541444|gb|ACPV01000030.1| GENE 14 8120 - 8995 970 291 aa, chain - ## HITS:1 COG:lin2023 KEGG:ns NR:ns ## COG: lin2023 COG1284 # Protein_GI_number: 16801089 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 11 283 9 279 288 262 52.0 5e-70 MRKIDKSILIDILMIALGCAIYALSLDMISVPNKLADGGLSGISLLLRHFWGINMGLSTL VLNIPLILLGYRFMGKRLLAYTIWGTLSLSFFLWFWHSVPIIKQLDLEHDLFLSAISAGL LSGIGLGLVFRYNGTSGGTDIIARICQIKFGISSGKMLLACDAIVLFASLSYLDIKHMLY TLLASFVLSRVMDTVQQGAYTARGLLIISDKYEQIGKMIDLKLNRGFTYLKALGGYQQNE KRVIYVVVAPREIPSIKALIKQEDPHAFVSIIEVNEAMGEGFTYKKPHRFF >gi|256541444|gb|ACPV01000030.1| GENE 15 9084 - 10283 1100 399 aa, chain + ## HITS:1 COG:SP1554 KEGG:ns NR:ns ## COG: SP1554 COG0617 # Protein_GI_number: 15901397 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Streptococcus pneumoniae TIGR4 # 7 395 1 390 394 322 44.0 1e-87 MIKIDNLPEIFTKAMPVLQILENAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVKE LFDKSIDTGIKHGTVTVLYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFT INALAMDTRGQIVDLFNGLDDLKNHVIRAVGDPEKRFHEDALRMMRAVRFMSQLEFKLES KTQQAIKDNHKLLKKISVERIREEFVKLGLGPHARQAFQVFLDTNLSEDVPDFGGKKDQL AIFPQLKFSPTMENSLWSLIILLLKLPNEQIHRFMRDWKNSNAMTEQVERIINLFDLLSS HAPSDYELFLAGEETLINTIDVAHIVGQPISSEALVDRYMALPIKKASELAVDGRFLIDR GMRPGAKLGQTLNKIRELVVSGEVENNQEAIESYLTTIE >gi|256541444|gb|ACPV01000030.1| GENE 16 10320 - 10985 388 221 aa, chain - ## HITS:1 COG:lin1978 KEGG:ns NR:ns ## COG: lin1978 COG1272 # Protein_GI_number: 16801044 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Listeria innocua # 17 221 6 210 210 181 51.0 7e-46 MKISKLWQQPEQRSERYYLLDNIFSAITHGIGFGLAVTGLVILIVKAAHTGSPMRVVTFT IYGSCLVLLYLFSTLYHSLVFTRAKNIFQIFDHSSIFLLIAGSYTPYSLVAIGGAWGWTL FGLIWGLTIFGIIYYIFNRGKHVILDTILYVAMGWLVILSGSYLYVRLSPTGFWLLVSGG IAYTIGAILFSMRNVPFIHTIWHLFVMLGSILMYFSVLLYV >gi|256541444|gb|ACPV01000030.1| GENE 17 11117 - 11950 1023 277 aa, chain + ## HITS:1 COG:SP1112 KEGG:ns NR:ns ## COG: SP1112 COG1307 # Protein_GI_number: 15900979 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 273 7 274 279 192 40.0 4e-49 MTDSSVQLTPEEVEKYDITVVPLTITIDGKSYVDGIDITRSDFVKKMNEAESLPKTSQPP IGRFVDVIKKLTADGSQVIGIFLAKSLSGTIDAARQAAEIAGQSDNVTIIDSELTDRAEG FQVLAAAKDAQAGKSMAEIIDHVKKIRSTQKLEMMVVNLQNLIKGGRLGALSGRIATMLN IRIALQMPQGKLIVAKKGRGKKFTRAFDERVLKEIADNKEHIKEVGISYVDTPELMEELA EKIRAINPAINVLVAETSPIIATHAGNGAYAILYYVE >gi|256541444|gb|ACPV01000030.1| GENE 18 11953 - 12183 218 76 aa, chain + ## HITS:1 COG:lin1971 KEGG:ns NR:ns ## COG: lin1971 COG4479 # Protein_GI_number: 16801037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 70 4 68 77 63 55.0 7e-11 MAYRESFYRYLMTQRDADSADDVAQFANNAQHDLTFPKQEQDYEKLSDYLELNASYLPSM SIFDRAYRMYEDKMMY >gi|256541444|gb|ACPV01000030.1| GENE 19 12232 - 12657 336 141 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01050 NR:ns ## KEGG: LCRIS_01050 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 141 1 141 141 216 97.0 1e-55 MQVVIFIGFIVFAVAFATIIQQRFLKRISVNYIAMAIGAAIALVPQTNSLIEDFSSELFM GLIVAPLLFFEGQRTRLYNVLRSWGAIVGLTVIMIILATITAGFGIYFSMGLSTTGFYSG CNFNANRCYSNRICNTWIEAA >gi|256541444|gb|ACPV01000030.1| GENE 20 12823 - 13179 75 118 aa, chain + ## HITS:1 COG:SA2228 KEGG:ns NR:ns ## COG: SA2228 COG0025 # Protein_GI_number: 15928018 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Staphylococcus aureus N315 # 30 101 223 294 692 62 48.0 3e-10 MATLLVFLRQESFRSKYHLSAGVAMPVDVIFFLTPLIIYFLAEEIHVSGIIAVVAAGLIH NVESERSRLTNAFIFYNSNQLSQLLIDILNGIVFLLLGIIIVRSMREDILINKQLMRF >gi|256541444|gb|ACPV01000030.1| GENE 21 13407 - 13826 425 139 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01051 NR:ns ## KEGG: LCRIS_01051 # Name: not_defined # Def: Na-H antiporter # Organism: L.crispatus # Pathway: not_defined # 1 120 227 348 348 221 94.0 6e-57 MIVPTIVFHMILDKDIPDFDQRKEVDRVRVAMIEYAMDQMKKIYLPKKIRKQLKFDLRAQ MNQTSMVDFAREIKYTIKQKELPDDQKEFRAEVYRYAFRQERDYLGKIAQQERKYRRGFL ALYRQILMSEVVFLDDEND >gi|256541444|gb|ACPV01000030.1| GENE 22 13847 - 14686 985 279 aa, chain + ## HITS:1 COG:SPy1161 KEGG:ns NR:ns ## COG: SPy1161 COG1161 # Protein_GI_number: 15675137 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 1 278 1 275 282 263 45.0 3e-70 MATIQWYPGHMNKARNQLEDKLGLIDVLVEVLDARIPQASRNPMIEGLVGNKPHIIILNK ADLADPVLTKAWAAELAGDNKYVLALDSLHNTNMQKLVSLVKKAAAAKTEKLEARGASNP TIRIALAGIPNCGKSTVINRLVGQNVAEVGNKPGVTKGQRWLKTNANIQVLDTPGILWPK FSDQEVGYKLAAFGAIKDSVFHADDVALFVLKNLREFYAKDLLKFSKLPEQQIADMADPD LLLSMTEKYGMRDDYDRFSLFMLQKLRKGAIGRITLDRP >gi|256541444|gb|ACPV01000030.1| GENE 23 14683 - 15435 727 250 aa, chain + ## HITS:1 COG:BS_rnh KEGG:ns NR:ns ## COG: BS_rnh COG0164 # Protein_GI_number: 16078669 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Bacillus subtilis # 1 248 4 254 255 242 53.0 5e-64 MTIKEIKELLKSEVSEAQINELEADPRAGVQKLLVSYRKRQAKLLAKKEEFLRRFSYEKK FWEKGQLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRLKLYPKILAE AVSVGIGVKSAEVIDQINIYEADRQAMAQAVRALDVKPNALLVDAMNVPVNLPQVKLIKG DAKSNSIAAASIVAKVFRDQLMDDYDRIYPQYCFHHNAGYGTKEHIEALKKYGPTPIHRK TFAPVSDFFE >gi|256541444|gb|ACPV01000030.1| GENE 24 15498 - 16346 808 282 aa, chain + ## HITS:1 COG:TM0250 KEGG:ns NR:ns ## COG: TM0250 COG0758 # Protein_GI_number: 15643022 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Thermotoga maritima # 45 274 38 263 337 196 44.0 4e-50 MKKTEFLLKLKLQKGIGYVKLLTIANQVTDETEIEFEELEQIELTEELMDACYRAFQDDQ LDRMVQQIEQQCDVISFFDEAYPEKLRQIYRPPMVLFTRGDISLLQKEIITIVGSRYPTK YSQDVINRLVPNIVQSGQVVASGLAKGVDALAHKAALFNQGKTIAVIGNGLNFSYPMQNF ALQEEIVQKGLLISEYLPDTPPRPYRFPERNRILAGLSQSIIVTEAKEKSGSLITANLAL QENRDIYAVPGPITNALSAGPNQLIEAGATPIVDFKFNKIKI >gi|256541444|gb|ACPV01000030.1| GENE 25 16416 - 18527 2011 703 aa, chain + ## HITS:1 COG:SPy1164_1 KEGG:ns NR:ns ## COG: SPy1164_1 COG0550 # Protein_GI_number: 15675140 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Streptococcus pyogenes M1 GAS # 17 581 28 589 589 699 63.0 0 MPTKAKSKTTKKRKKTLVIVESPAKAKTIEKYLGRNYHVIASKGHIRDLPKSQMGIDFED DYKPKYISIRGKGDTIKELKSEAKKAKDVYLASDPDREGEAIAWHVAHALNLDEKAKNRV TFNEVTKDAVKESFKHPRTIDMDTVDAQQARRVLDRIVGYSLSPILWAKVKKGLSAGRVQ SVALKLVIDREKEIKNFKPKEYWSIDAEFAKGKETFKSAFYGVDGKKKELPNIDSVKDVL AKIDKKKDFVVDKVVARQRRRQPAAPFTTSTMQQEANKRLGYRTRRTMSIAQQLYEGISL GKQGTVGLITYMRTDSKRTSPVAQQEASKFLHENYGAEFAAKSQRHFKNQEDAQDAHEAI RPTSVYRTPESLKSVLTTEQYRLYKLIWSRFLASEMTPAVYDTVRADIVQNGVIFRTTGS KLKFAGFTKVYDNQQEKNVDLPDLEEGDKVKMTKSDNKQHFTLPPARYTEASLVHALEEN GVGRPSTYAPTIDTIQRRYYVKLDGRSIVPTELGEIVDGLIESFFPDITDVDYTARLENE LDEVEDGKKDWVHVVDEYYQPFKKELNKADSEIEKVQIKDEPAGFNCDICGAPMVIKMGR YGKFYACSRFPDCRNTKPIIKEIGVVCPKCGKGQVVEKKSRRNRKFYGCSRYPECDFVSW DKPIGRNCPNDGHFLVEKHSKKGPVILCPNGDYREDSENEKNN >gi|256541444|gb|ACPV01000030.1| GENE 26 18550 - 19866 1422 438 aa, chain + ## HITS:1 COG:lin1315 KEGG:ns NR:ns ## COG: lin1315 COG1206 # Protein_GI_number: 16800383 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Listeria innocua # 1 436 1 434 434 567 65.0 1e-161 MPKNVTVIGAGLAGSEATWQLAKRGIHVDLYEMRPKKETPAHETGEFAELVCTNSMRSNQ LSNAVGLLKEEMRHLDSLIMKAADKTQVPAGGALAVDRDSFSKYVTDTLRGLENVTVHEE EVTEIPKDGITIIATGPLTSDALAGQIQKFSGTDSLHFFDAAAPIVAADSIDMKIVYKKS RYDRGEAAYLNCPMTKEQYEKFSQELINAETAQLHGFENSDVFEGCMPIEVMAARGAKTM LFGPLKPVGLEDPHTGKTPYAVVQLRQDNAAASMYNIVGFQTHLKFGEQKRVFSMIPGLE NARFVRYGKMHRNTYMASPEVLTASYEAKEQPGLFFAGQMTGVEGYVESAGSGLVAGINA AREAMGKDTVAFPKDTALGSMANYITTTSAKHFQPMNASFALLPPLEGKKIRKKRERHEK VSERGLASLDEFKTEVLD >gi|256541444|gb|ACPV01000030.1| GENE 27 19866 - 20774 610 302 aa, chain + ## HITS:1 COG:BS_codV KEGG:ns NR:ns ## COG: BS_codV COG4974 # Protein_GI_number: 16078677 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 11 298 11 299 304 235 43.0 8e-62 MNQRQSELDQFLSYLQNERHYSAKTVLAYQTDLHEAERFWHENGGFPGWTKVRERDIQVY LQHLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTQGITLRRGEKKLPQFFYQPEL KQVFDSLKGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTILVHGKGNKDRY VAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQKTFNQAGISG KVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFPRNK ES >gi|256541444|gb|ACPV01000030.1| GENE 28 20783 - 21307 721 174 aa, chain + ## HITS:1 COG:lin1317 KEGG:ns NR:ns ## COG: lin1317 COG5405 # Protein_GI_number: 16800385 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Listeria innocua # 2 174 6 179 179 184 56.0 8e-47 MTTICSVRFNGKTAIAGDGQVTLGEKVIAKATARKIRRIYHDRVVIGFAGGVADAVSLQD MLEGKLESYSGDLRRAAVEMAQAWRKDPTLQKLNAMLIAFDDKDLLLISGNGEVLEPDEN VVAIGSGGNFAQAAAIAMTRHAKDMKADEIAHEAVKIASGIDVFTDDKIVTDEI >gi|256541444|gb|ACPV01000030.1| GENE 29 21319 - 22716 1246 465 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 5 465 9 466 466 484 54 1e-136 MAIKTPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLSKEMQREVTPKNLLMAGPTG VGKTEIARRLADIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVSEAVRMEEKDQFARVK TQATKEANKELVRLLAPAEKHERRENQMQQMQDMMSMLMGENNREEDHEEDVSADVRNKR MDVAEKLAKGLLEDHEVTIEVEQAPKANPMSDMMGQMGMDMGSMLSDLMPKKKVKRTLSV KEAREVLIQEESRKLVDYDAIYQHAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSREGVQ RDILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKD DFVKILKDPQNSLLKQYIALMKADGIKLVFTQEAVDKIAEIAFDVNQGTDNIGARRLSTI LEKLLEDVLYEGPDMEMGEITVTEAYVEDKLGDIIMNKDLTKFIL >gi|256541444|gb|ACPV01000030.1| GENE 30 22876 - 23772 863 298 aa, chain + ## HITS:1 COG:CAC3032 KEGG:ns NR:ns ## COG: CAC3032 COG2017 # Protein_GI_number: 15896283 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Clostridium acetobutylicum # 5 290 5 295 298 210 39.0 3e-54 MDYTIKNNMIEVVISDHGAEVQSVKGAHTGEEYMWQADPEIWGRHAPVLFPIVGRLKNDE YKYQGKTYHMGQHGFARDCDFEVENHTQESITFLLKDNEKTREMYPFKFEFRVNYNLMNN LLEENFSVVNKSDETMIFGVGGHPGFNLPVNNGEEKEDYYFDMHPSIARVKIPLKGAYLD WNNRSLASTDSFIGLSDELFKDDALIYELHGHDNKVSLRTDKSKFHINVWTRNAPYVGIW SQYPNTANYVCIEPWWGIADREDADGELEHKYGMNHLEPGKEYQAGFSITYHSASDPE >gi|256541444|gb|ACPV01000030.1| GENE 31 23790 - 24611 622 273 aa, chain + ## HITS:1 COG:TM1009 KEGG:ns NR:ns ## COG: TM1009 COG0656 # Protein_GI_number: 15643767 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Thermotoga maritima # 4 256 6 264 286 216 44.0 4e-56 MKYLTFNNGVKTPIFGFGTYRIQPRITEGAVVEALKAGYRLIDTAQAYSNEAEVGNAINK SGIKREDIFLTTKAQTSGYRETKNGIDESLIHAQQDYFDLMIIHWPMSDSLGTYQALEEA YQAGKLRSIGLSNFNHDQVNEIMNNFDTKPVVDQIETSVFKQQKKMHKYLIENNIVHESW SPLGEGMKALFNDPTLLSLAEKYNKTVPQIALHFLVQENIMTIPGSTNPLHMKDNLDIFD FEFTAEEMETLRGLDQKRGIGGWPASMDQELDY >gi|256541444|gb|ACPV01000030.1| GENE 32 24899 - 25591 745 230 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01064 NR:ns ## KEGG: LCRIS_01064 # Name: not_defined # Def: aggregation promoting factor # Organism: L.crispatus # Pathway: not_defined # 1 230 1 230 230 251 98.0 1e-65 MKTKSILTKTIAVAALSLAGIGAINQLDNNEAQAAVVQNDAAVYTTTQATTVYNNYENPV ATGQTLAAGTNWKIIKTAYDSKGQKWYDLGLNQWVLATNYTTSQNTQARQENTYTQTQTP AQQTTQASQSQSSYTYSNVNYTPKTTTTSSYSSTATGSEASAKAWIASKESGGSYSARNG QYVGKYQLSSSYLNGDYSAANQERVADNYVKSRYGSWSAAKSFWQANGWY >gi|256541444|gb|ACPV01000030.1| GENE 33 25688 - 26254 518 188 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01065 NR:ns ## KEGG: LCRIS_01065 # Name: not_defined # Def: integrase-recombinase # Organism: L.crispatus # Pathway: not_defined # 1 188 84 271 271 352 98.0 4e-96 MYFVFLNEYGYIITYPLLTLRGNRFNRKQHYVIGWENHLSELIQIKNIHPETIKMMAAIA CGFKPKEIMILHVNELLVKVKENDVREYIQNHTNFANNDNPYLFARRDGKHYASDFNINQ KIAPDRSIVGMPLTTHKLRMSYVYSVLSNSKLREADYIEKLHLSMKTLNYYRKNMTLYVE TSKFELKK Prediction of potential genes in microbial genomes Time: Wed May 25 05:15:36 2011 Seq name: gi|256541443|gb|ACPV01000031.1| Lactobacillus crispatus 125-2-CHN cont1.31, whole genome shotgun sequence Length of sequence - 11463 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 6, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 204 - 263 8.6 1 1 Op 1 11/0.000 + CDS 443 - 841 262 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 2 1 Op 2 . + CDS 838 - 1215 418 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 3 1 Op 3 . + CDS 1235 - 1456 199 ## LCRIS_01068 homocysteine S-methyltransferase 4 1 Op 4 . + CDS 1450 - 2226 777 ## COG0833 Amino acid transporters + Term 2267 - 2316 7.5 - Term 2212 - 2266 8.1 5 2 Tu 1 . - CDS 2328 - 3734 1793 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 3762 - 3821 10.3 + Prom 3718 - 3777 8.9 6 3 Tu 1 . + CDS 3921 - 4427 484 ## COG5015 Uncharacterized conserved protein + Term 4428 - 4490 14.1 - Term 4421 - 4472 10.4 7 4 Tu 1 . - CDS 4475 - 5947 1488 ## COG0531 Amino acid transporters - Prom 6041 - 6100 8.0 + Prom 6000 - 6059 6.9 8 5 Op 1 . + CDS 6180 - 8267 1928 ## COG1982 Arginine/lysine/ornithine decarboxylases 9 5 Op 2 . + CDS 8278 - 9537 1514 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance + Term 9547 - 9604 9.1 + Prom 9570 - 9629 12.0 10 6 Tu 1 . + CDS 9657 - 11426 1368 ## COG0514 Superfamily II DNA helicase Predicted protein(s) >gi|256541443|gb|ACPV01000031.1| GENE 1 443 - 841 262 132 aa, chain + ## HITS:1 COG:lin2188 KEGG:ns NR:ns ## COG: lin2188 COG0239 # Protein_GI_number: 16801253 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Listeria innocua # 8 121 3 120 129 67 37.0 5e-12 MNSKFINYISIAIFAFFGGMARAGLNANFSYYGTFLGNVIGCFLLAFFTYFFIETKEIRQ WLVVGLGTGFVGAFTTFSTFNLDVLKNMQANLPIEAVIYYFSSIIFGFVFAMLGMKIGKK VGQLVRKERNTR >gi|256541443|gb|ACPV01000031.1| GENE 2 838 - 1215 418 125 aa, chain + ## HITS:1 COG:lin2187 KEGG:ns NR:ns ## COG: lin2187 COG0239 # Protein_GI_number: 16801252 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Listeria innocua # 1 121 3 117 118 75 42.0 2e-14 MNFLLAGIGASIGAMLRYAITNYGKKHWEWIGNKFSNLPTPTLLINLTGALILGLIFGIG ANTFIYALLGTGVMGGYTTFSTMNTELVELYKSKNYRGLVFYAVSSYLGGLVLVYCGYYL GNLLK >gi|256541443|gb|ACPV01000031.1| GENE 3 1235 - 1456 199 73 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01068 NR:ns ## KEGG: LCRIS_01068 # Name: not_defined # Def: homocysteine S-methyltransferase # Organism: L.crispatus # Pathway: not_defined # 1 73 1 73 73 138 100.0 6e-32 MGLLEQIKNKGLVLDGAMSYELEKQGVDNNNKLWTATALIDQLSKVYQAHWDWLIFIKMA GSPTAGVEYLQQC >gi|256541443|gb|ACPV01000031.1| GENE 4 1450 - 2226 777 258 aa, chain + ## HITS:1 COG:ykfD KEGG:ns NR:ns ## COG: ykfD COG0833 # Protein_GI_number: 16128245 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 253 218 469 475 273 56.0 3e-73 MLTVNFAFSGTELIGITAGEAENPQKAIPEAIRTTLWRLIVFFIGSIVVMAALIPYHTAG VTQSPFVYVLDLIHVPFAANIMNFVVLTAIISAANSGLYASTRMLWSLGNEGTIPKAFTK TNKRGIPVLSLVVSMLGGIFALISSKVAASTVYLVLVSISGLAVVFVWTAIAWSELKFRR AFLNSGHQLSELKYKTPWYPVIPYFAFISSLLSCVLIWFDPTQRVALYYTIPFVAICYLG HHFWLKSKKNNEEVLLEK >gi|256541443|gb|ACPV01000031.1| GENE 5 2328 - 3734 1793 468 aa, chain - ## HITS:1 COG:SPy1070 KEGG:ns NR:ns ## COG: SPy1070 COG0624 # Protein_GI_number: 15675062 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pyogenes M1 GAS # 3 465 4 469 469 405 47.0 1e-112 MNIDYKKLAQAKKDDILRDLDELIAIDSSEDLNNTSEEYPVGPGPVKAMKKFLSFAQRDG FHIKNVDNYAGRVDYGTGEKRLGIIGHMDVVPAGDGWVTDPFKMLIKDGKIIGRGSADDK GPALAAYYGMLLLKEAGFEPKKKIDFIVGTNEETNWVGIDYYLKYEPTPDQVFSPDAEFP IINGEQGIYTLTMTFKDDNKKGSVVLKSFKAGIAENVTPQKAYATIVGSDLATMKEKYTK FLSDNKLEGEFTIEGDEAKIELTGQGAHASAPQVGRNAATFLAVFLDQFDFAGRDRSWLH FLADVEHEDFNGKKLGVAHHDDLMGDLSSAPSMFDYEKNGNAVLKDNIRYPQGTDPDKMV KQVEEKFGDILTQSFASFEEPHYVPGDDPLVQTLLKVYERQTGNKGHEVVIGGGTYGRLF KHGVAYGAQPEDAPMVMHQANEYMKVDDLINSIAIYAEAIYELTKDAE >gi|256541443|gb|ACPV01000031.1| GENE 6 3921 - 4427 484 168 aa, chain + ## HITS:1 COG:MA0739_1 KEGG:ns NR:ns ## COG: MA0739_1 COG5015 # Protein_GI_number: 20089624 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 27 143 33 142 163 58 29.0 5e-09 MRQHVPELDRNLSNDEFLDLIVDCFHSVIFGTVDQNGDPHTNIIDIDFNEDGRLIFATTN QKSFYRHIKGHNKVSITALRGRETLTSIGFTLEGYVDEVSPQYLERIYKIKPQMHHIYAN KTKDMNTLRAFALTPIIGSVYDLRFDHVFQKQFDFVNVPSKMQVEILE >gi|256541443|gb|ACPV01000031.1| GENE 7 4475 - 5947 1488 490 aa, chain - ## HITS:1 COG:L119780 KEGG:ns NR:ns ## COG: L119780 COG0531 # Protein_GI_number: 15673092 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 18 486 6 476 488 318 37.0 1e-86 MSETIETVNFEPEKKHYMSWPVIALIDFVTIISFENIFYPFQNQGLSVVVSWIFLLFAYV IPYALMSSQMGLTFTDQAGGLASWVRHSSNDTLGYWTSWMYWVQTVPYLVDVSNSVIVSF SWIILGNNTLDKHMSTFWFGILTFVIILAFILVENAIKNSLELLSLIGGGAMFIMSMLFV LLAVWSVMHGHHIATQPFNLAAFKPSFSLRYFSTTGLLIFAMSGAELAAPYIVQMRDPKH EFPKAMWMLALMTGFLTIFGTLALAMFFNAHHIPHDFKMNGPYYAFQLLGESLGWGKVLM YIFAVVQALFMMAQLAVLLDASSRVFAGDVADKFMPKWLTGKKDKTGRPVHSYTLTCGLA LFLLLLTGTLPNINSIYNWLLNINGIISPYKTCWVFFAFIMLRMHQEKFHSDYVFIKNKT GALIMGWWCLIFTFICATLGFIPQEAEATFGSAAFNHQLIMNIITVIVLFGLGFLLPYLR KREERKEMNI >gi|256541443|gb|ACPV01000031.1| GENE 8 6180 - 8267 1928 695 aa, chain + ## HITS:1 COG:HI0591 KEGG:ns NR:ns ## COG: HI0591 COG1982 # Protein_GI_number: 16272535 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Haemophilus influenzae # 33 683 32 708 720 604 43.0 1e-172 MDFLKIAIGNGVNVNKMKGWSSIPIGDVQNSAELAAIVVKNDDALGIKQAEALREQSGFP IPLIKVTDQVDEDQVTPKATEYEKQMVPGFLTDLINFAQAKPISFTTPGHHNGQYYDKHP AGVVFNKFFGKNLMFADTSDTVPQLGDTMTHAGTPLNAEKKAAKTYHADKVYFCTNGTTS ANSICASALLSEGDLVLFDRNNHKSLYNSALVMSGAKPVYIPTDRNALGLIGEMDPAFLT EDKIRAEVAKIDPAKAKAKRPFRLAIVQAETYDGVFYDAQWIIDRIGKLCDYVLFDCAWG GFEEFVPIMRHLSPLLLNLGPDDPGILVTQSLHKQQAGMAQASQILKKDAHIKGQKRYVD HKHFNHAYLKFVTSSYAYPLYASLTVNSYVTAGAGNKKWWDQTLRMGIEWRKKLLKKSKL FKPLVPDNFAEISTDELATNAEYWEMGQNTDWHGFRKMVPGEAMIDPLKITVKTPGIDVK NAKYEKVGIPGAVVAEYLMENHIIRAKNDLNSLLFLLTPGDSQAELDTLLEAFLSFEKHY LEDDLMKDVLPVLYNEYPKRYQGYTLKQLCQEMHEYYQENNTFVLQQKLFSKSGMQDYQM TPATADQLFKKDQNELVNLENVVGRIAAEGALPYPPGVFIVAPGEKWGTVDQKYFEVLAH AIEKFPGFVPEIQGVYLSENNNGSLCVQAEVIKNK >gi|256541443|gb|ACPV01000031.1| GENE 9 8278 - 9537 1514 419 aa, chain + ## HITS:1 COG:SA1148 KEGG:ns NR:ns ## COG: SA1148 COG4100 # Protein_GI_number: 15926890 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Staphylococcus aureus N315 # 11 415 2 405 412 409 49.0 1e-114 MSFSWKENLPKELSDKVTKVESMIQPRLEKIDEQVLYNQQRVLDLFRKHHVGEEDLVPST GYGYDDIGRDKIEDIYADYFKTDDALVRPQFGSGTHAITVGLFSMLRPGDTLYYLTGTPY DTIQEVIGLAGNKPGNMKEWGIKFKTTELKDGEVDYDQAKKDIMDPSIKVVAIQRSLGYA TRKTFTMAKIKPMLKFIKEVRPDVNIFIDNCYGEFSECEEPTFYGADLMAGSLYKNAGAG LVKGGAFLVGRQDLIDGAGSRLTVPGAGKGEGATWGYLRDIYQGFFMAAHTTGEAQKGMV FTAALLEEMGMQVSPKWSDPRSDIVQTVTFGKPDPMVKFCAAIQHYSPMNSFVDPIPYHQ DGYEDEVVMASGSFVEGSTIELSSDGPLREPYMLYIQGGLSYAHDKIAITHAVEETFYK >gi|256541443|gb|ACPV01000031.1| GENE 10 9657 - 11426 1368 589 aa, chain + ## HITS:1 COG:L0268 KEGG:ns NR:ns ## COG: L0268 COG0514 # Protein_GI_number: 15673790 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Lactococcus lactis # 1 589 1 591 592 557 48.0 1e-158 MNPEEVLKDTFGYTNFRPGQKQVIDLVLKKQNVLAVMPTGGGKSMCYQIPALINPGVTLV ISPLISLMKDQIDNLKQNGINAAALNSTTPQEEVNPILRQAYEGKIKLIYITPERLAIDY FRYQLNFLDIDLVAVDEAHCISQWGHDFRPAYRQLLDGINSLKSRPNILALTATATPAVQ DDICEQLNIPKENMIVTSFARPNISFKVVNSPQNTPLYISEYIKAHQDKAGIIYTNTRKK VESLTDYLAKKGISVGAYHGGMDSSERSQVQEAFQFDEFQVIVATNAFGMGIDKSNVRFV IHASSARNMESYYQEAGRAGRDGEESEAILIYHPGDLRQYRYFIDESDADDKYRELQYRK LQTITDYANTGECLQQFIVRYFGQDCPPCGKCSNCLNQDKLTDITIDAQKVISMVYELDG RFGKTIVAQCLIGSKNQRMQEMNATQYKSFGSLRMKQKDAISLIDYLIASGYLEVEGSKY PLVHVTNHGWDVLDGKTVVKRRIAKISVTTTHAGEESDTLFEALRQKRLELAKQQKVPAF MIFSDRSLHDMAQIKPQNESEFLEVSGVGQAKMKKYGQAMMEIIKRKGK Prediction of potential genes in microbial genomes Time: Wed May 25 05:15:39 2011 Seq name: gi|256541442|gb|ACPV01000032.1| Lactobacillus crispatus 125-2-CHN cont1.32, whole genome shotgun sequence Length of sequence - 838 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 48 - 500 669 ## LCRIS_01076 trp repressor binding protein + Term 523 - 562 3.6 Predicted protein(s) >gi|256541442|gb|ACPV01000032.1| GENE 1 48 - 500 669 150 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01076 NR:ns ## KEGG: LCRIS_01076 # Name: not_defined # Def: trp repressor binding protein # Organism: L.crispatus # Pathway: not_defined # 1 150 1 150 150 289 98.0 2e-77 MAKKTLIIYYSWEGNTKNMAKKINGEIENSELKEVTVAPDAFDSDMYKTNDIALDQIQGK VPYPEIQMDDIDFNNYDLILVGSPVWSGYPATPIKPLLEKMKNYRGEVASFFTSAGTNHK AYVSHFKEWANGLNVVGVARDDSEVRDWVK Prediction of potential genes in microbial genomes Time: Wed May 25 05:15:51 2011 Seq name: gi|256541441|gb|ACPV01000033.1| Lactobacillus crispatus 125-2-CHN cont1.33, whole genome shotgun sequence Length of sequence - 34307 bp Number of predicted genes - 29, with homology - 28 Number of transcription units - 18, operones - 7 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 71 - 2584 2000 ## COG0178 Excinuclease ATPase subunit + Prom 2636 - 2695 3.6 2 2 Tu 1 . + CDS 2735 - 3724 794 ## COG2040 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) + Term 3895 - 3943 6.4 - Term 3936 - 3970 2.0 3 3 Tu 1 . - CDS 3980 - 4612 558 ## COG0671 Membrane-associated phospholipid phosphatase - Prom 4639 - 4698 9.4 + Prom 4578 - 4637 10.8 4 4 Op 1 . + CDS 4708 - 5157 461 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 5 4 Op 2 . + CDS 5174 - 5788 593 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 6 4 Op 3 1/0.333 + CDS 5841 - 7040 1109 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 7048 - 7093 6.1 7 5 Op 1 1/0.333 + CDS 7106 - 7936 781 ## COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase 8 5 Op 2 . + CDS 7939 - 8505 626 ## COG4720 Predicted membrane protein 9 5 Op 3 . + CDS 8580 - 9785 1422 ## COG1376 Uncharacterized protein conserved in bacteria + Term 9796 - 9827 1.0 + Prom 10131 - 10190 13.8 10 6 Op 1 . + CDS 10232 - 10687 504 ## LCRIS_01092 acetyltransferase, GNAT family 11 6 Op 2 . + CDS 10700 - 11983 1217 ## COG2195 Di- and tripeptidases + Term 12110 - 12148 1.2 - Term 12293 - 12334 -0.5 12 7 Op 1 . - CDS 12336 - 13055 405 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase 13 7 Op 2 . - CDS 13058 - 13597 394 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase + Prom 13635 - 13694 7.2 14 8 Tu 1 . + CDS 13738 - 14139 377 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Term 14153 - 14195 5.3 15 9 Tu 1 . - CDS 14204 - 16138 2250 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 16180 - 16239 10.5 + Prom 16249 - 16308 6.3 16 10 Op 1 3/0.333 + CDS 16333 - 17058 815 ## COG2188 Transcriptional regulators 17 10 Op 2 . + CDS 17068 - 18735 1279 ## COG0366 Glycosidases + Term 18805 - 18848 5.3 + Prom 18794 - 18853 4.5 18 11 Tu 1 . + CDS 18911 - 19348 410 ## LCRIS_01098 putative protein without homology + Term 19374 - 19441 -0.0 19 12 Tu 1 . - CDS 19609 - 20886 1667 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 20936 - 20995 10.2 20 13 Tu 1 . + CDS 21249 - 21614 630 ## LCRIS_01100 pyridoxine 5'-phosphate oxidase V related favin-nucleotide-binding protein + Term 21634 - 21670 7.3 + Prom 21621 - 21680 5.1 21 14 Tu 1 . + CDS 21718 - 22944 860 ## COG1409 Predicted phosphohydrolases + Term 22967 - 23012 9.2 22 15 Tu 1 . + CDS 23652 - 23810 66 ## + Term 23819 - 23859 5.0 + Prom 23843 - 23902 7.6 23 16 Tu 1 . + CDS 23955 - 26048 1649 ## LCRIS_01103 hypothetical protein + Term 26080 - 26112 2.4 + Prom 26098 - 26157 4.8 24 17 Op 1 . + CDS 26186 - 29020 2402 ## COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 25 17 Op 2 . + CDS 29001 - 29405 380 ## COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases + Prom 29420 - 29479 4.2 26 18 Op 1 . + CDS 29500 - 30801 1327 ## COG1106 Predicted ATPases 27 18 Op 2 . + CDS 30782 - 31363 541 ## EF3241 abortive phage resistance protein, putative 28 18 Op 3 27/0.000 + CDS 31378 - 32829 1230 ## COG0286 Type I restriction-modification system methyltransferase subunit 29 18 Op 4 . + CDS 32819 - 34261 844 ## COG0732 Restriction endonuclease S subunits Predicted protein(s) >gi|256541441|gb|ACPV01000033.1| GENE 1 71 - 2584 2000 837 aa, chain + ## HITS:1 COG:MA3325 KEGG:ns NR:ns ## COG: MA3325 COG0178 # Protein_GI_number: 20092139 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Methanosarcina acetivorans str.C2A # 149 830 246 933 993 458 38.0 1e-128 MTIPTKIEVRGGRVHNLKNIDVDIPLNKFVAISGLSGSGKSSLAMGILYEEGSRRYLDAL STYMRRRIKQGNQVDVTSVKHIPSALALRQRPSVPNERATVGTMSETFNVLRLIFSRLGS PVCPNGHRLKPSLAIAKAMSMSGEQMGQLTCPVCGVKFYAPSAEQFAFNSDGACTECGGT GKVRQLDESKLITDENLSIKDGAVASWSLPGRNFMPNVAEHAGVRIDIPYKDLTDKEKDF VLNGPEKKYKMDFLSGTGRVFHDFNALYENARQAVYRSAKSSKSERAQKRIAEFFTYSTC PLCHGSRLKPELLQQLIGKQNINQVAEMQLGDLVTWVKDVQATLPTNMHKMAHSIIQEFL DNLQPLLDLGLDYLTMARSGNTLSTGELQRIQLARTLRTETTGVLYVLDEPSIGLHPANV AGLIKVLRKLVAQGNSLVVVDHNVDIIKAADEVIEIGPGSGKKGGQILDQDSITAIKHDQ HSLIRPYLDGSAKLLAREPANQINSDSISFEVKQYFNLHDVKTKIPLNQLTAVTGFSGAG KTSLILDSLVPAIIAKSKSEKLPKQISSFSSPISNVVSVDASPIGKSTRSTVATYTSIMD NLRKLYASQPLVKKKHYTPSWFSYNNKQGACPTCGGTGIVTLDIQFLPDMQQVCPTCHGD RYNQDVQKVKWHDLSIVDVLNLDVNEALPIFVKVPKIERELKLLKEVGLDYLHLGEDTPT LSGGEAQRLKLVTHLSHKQNDTLFVFDEPTIGLHPLDVKVLVQVMQKLLDQGATIITITH DLNLIVNCDYMIDLGPRGGKNGGRIVQEGKPLELKQKPESLTAHYLANYLHDFKNLF >gi|256541441|gb|ACPV01000033.1| GENE 2 2735 - 3724 794 329 aa, chain + ## HITS:1 COG:CAC3348 KEGG:ns NR:ns ## COG: CAC3348 COG2040 # Protein_GI_number: 15896591 # Func_class: E Amino acid transport and metabolism # Function: Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) # Organism: Clostridium acetobutylicum # 12 307 15 314 314 232 41.0 7e-61 MNLLKQIRDRGLILDGAMSTALEKLGIDTNNELWTAIALEHNLAQIYQVHMNYFKAGAQM AITDTYQANIPAFEKHGFTQDQATKLITNAVQIAKKARDDFAKTTGIHNYVAASVGPYGA YLAQGDEFRGDYSLTTEEYLNFHLPRLKILLANKPDCLALETQPKLDEVVAILDWLKENA PEFPVYVSFTLHDTTKISDGTPLKRVVQKLNEYDQVFAIGANCFKPFLATAVIDKIHDFT DKQIVIYPNLGGVYNEFERNWIPFNAKFDFKKLSQEWYEHGARIIGGCCSTTEKEIGQIS AFFKTINNTKSKSVKSELKKVKNDSNIQI >gi|256541441|gb|ACPV01000033.1| GENE 3 3980 - 4612 558 210 aa, chain - ## HITS:1 COG:SP0489 KEGG:ns NR:ns ## COG: SP0489 COG0671 # Protein_GI_number: 15900403 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 204 1 208 216 83 30.0 3e-16 MRKKNIYSICIGLPIFLILAFSIMAHASWVTGFDNFFEGLVHSIPNLQSIMHVITFLADT KVDLVWMLLIAVILWLKKQRPLSASIVISLVTADAFGWIVKHIIQRARPTAHLAADDGFS FPSGHTLGMAIIVFWLILILIPALVKNKTAKIWLTVLLAIWLVLVMISRVYLYAHWPSDV CGSVAMGLMWIGLVDAIWDKVTPQTDKNNF >gi|256541441|gb|ACPV01000033.1| GENE 4 4708 - 5157 461 149 aa, chain + ## HITS:1 COG:CAC3445 KEGG:ns NR:ns ## COG: CAC3445 COG0454 # Protein_GI_number: 15896686 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 1 144 1 143 147 159 57.0 2e-39 MEIKEIKSNKKQYIDLLLLADEQESMIDRYLERGIMYILIDKGKVRSECVITVENGNTVE IKNIATYPEDQGKGYAKHLINFIAKKYQNKYQILQVGTGDSPLTIPFYEKCGFKRSGKIK DFFVKNYDHPIFEAGHQLVDMIYLSKRLN >gi|256541441|gb|ACPV01000033.1| GENE 5 5174 - 5788 593 204 aa, chain + ## HITS:1 COG:SP0074 KEGG:ns NR:ns ## COG: SP0074 COG0110 # Protein_GI_number: 15900019 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Streptococcus pneumoniae TIGR4 # 1 193 1 182 185 166 44.0 2e-41 MEENTKKMLAGKPYRPDTEELKKIFGLAHRLSRDYNMTTDEDEVERKAIIDRLFPNHGQN VYLQGPIEVDYGQFTHLGDNFYSNFNLTILDTCPVTIGNNVMCGPNVTFATPLHPLLPTQ RNARKQSGGKIADIEYGAAITVGDNCWLASNVTVCPGVKIGKNCVIGAGSVVTKDIPDNS LALGVPAKVIRQITDQDHLNNYPY >gi|256541441|gb|ACPV01000033.1| GENE 6 5841 - 7040 1109 399 aa, chain + ## HITS:1 COG:lin0544 KEGG:ns NR:ns ## COG: lin0544 COG1680 # Protein_GI_number: 16799619 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Listeria innocua # 83 334 102 344 398 86 28.0 1e-16 MKKINANIMGRIYITLLGEFKTKRINLKKTLIKSTIWLTIAASMPVGMAIANANSSTVQA ASYNKTEMRSFVRNTLASYYARGTVVIVKDGQPQQISYGYGYYGKRLGAGNSKVVYPVCS LQKVITGAIITQLISAGKFTQYTKISKWYPNLKGADNITVGNLMTHTSGLTAADTEVNRG RVYSEADAINWVVNKLNSTTQNQPGNFSYNNTNYILLAGIIRQETGQSYKQNVQERIINK LGLKRTYFLEDIPAGMTDGISYTWNQKNYQWAQYVKKTQASQLVGAGNLFSAPMDYYRIQ LGLTNGQILSRTDFDYMTHLTSRSSNGYSGGLYMKNNDNLKLAYGNLYNTHFGNWIQMTT DNQNGLIMFLNQTQNDENRNKQIGYQILNHIKANTFSAK >gi|256541441|gb|ACPV01000033.1| GENE 7 7106 - 7936 781 276 aa, chain + ## HITS:1 COG:CAC1622 KEGG:ns NR:ns ## COG: CAC1622 COG2240 # Protein_GI_number: 15894900 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal/pyridoxine/pyridoxamine kinase # Organism: Clostridium acetobutylicum # 10 251 12 258 290 171 37.0 2e-42 MVNGGVLVSQDLSCAGQVSLSAALPVLGACGLSPTVLPTAILSTHTGGFGENTFLSLNNE MAKIMAHWQKVGFDFSAVYLGYLGKRALDFWTEKISYFKQKNKLILIDPVMGDHGQLYRG IDENYVIKMRNLVKSATILTPNMTEAAFLLGKKATSNSLKTATEFAAELSSQFGVSNVII TGISLNKEKIAEVGITADHSWSLIQKKLPGNYFGTGDLFASAFFAALMHKENLEKACSIA ADFVAQAIRETPKQDSRLGPNYAAALPDLLKRWSNN >gi|256541441|gb|ACPV01000033.1| GENE 8 7939 - 8505 626 188 aa, chain + ## HITS:1 COG:SPy1208 KEGG:ns NR:ns ## COG: SPy1208 COG4720 # Protein_GI_number: 15675172 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 19 178 14 171 185 75 33.0 5e-14 MQIFRENKNSLQALVLTGLFAAIIYIGIWVLRIPVPAMVGRPFIHFGNTLTAVAILYLGY RNGMIAGIIGLGGFDLLNGYAATSWLTMLEVVVVASVLTAVYRGMHYQDSKRNIIILGII AGVTKIFTTYCVSIVEALMVGTSFKVALVGAFVSLPATVINSISTAICTPILYFALRDAS RLIIKKVR >gi|256541441|gb|ACPV01000033.1| GENE 9 8580 - 9785 1422 401 aa, chain + ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 210 400 292 465 466 112 40.0 2e-24 MNEDLKKKNKRNNIIILTIAVLIIVGVIAGFGIHNHRVATQAAAEKYAKTHFNPNVTIDG VKVGKLTVTKAMAKVNQKAKNQVELKNNKLVYSYNTTVQSLDESETKAFFKKQQTKTPST QTYKFTTSNLATAKKKLTDLSKAEITYKINGKNYQLKAKDLLNNVTYRDNRYQFGDTSKL TTKLNQIDKEVSTLHKSYKFTVPKGNKVKGKTITVKNKTWGWGVYVKKTQRLLLEAFAKG QKNFDGADALYGLGYSTYPHGYGYSNKEIGDTYAVVSLKKQEVWLIKKGKLAVHLRDVVT GTMEGSKGDQTPRGVWYIHYKESPSTLRGTNDNGSSYASPVKYWMPFTLSGCGFHDASWR TDWSKTAYLKGGSHGCVNVKPSEIRSVWNNIKKGEPVIIYE >gi|256541441|gb|ACPV01000033.1| GENE 10 10232 - 10687 504 151 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01092 NR:ns ## KEGG: LCRIS_01092 # Name: not_defined # Def: acetyltransferase, GNAT family # Organism: L.crispatus # Pathway: not_defined # 1 151 1 151 151 308 99.0 4e-83 MQVRTRCFQSLDYEDLCRVHDAARLQEMKIGGVEKYFIPFKEAPYWYNFFDSEIRIVEVN NEFAGFAAYKPHNLAYFYIDPQFQRRGIGDQLLASVLPNIRRPIRLEVFSANIAAKALYA KHGFKIIKTVKESWWSDPKSEPVSSDTMELV >gi|256541441|gb|ACPV01000033.1| GENE 11 10700 - 11983 1217 427 aa, chain + ## HITS:1 COG:FN0733 KEGG:ns NR:ns ## COG: FN0733 COG2195 # Protein_GI_number: 19704068 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 10 407 10 406 412 370 46.0 1e-102 MSFYNLDYEEKRFIQLAKKNTRSYYEHHDQIPSSPGQVELAKELVKEMKELGLDAYYNEK TAFAIGKLSANTAEKVTPIGFFAHVDTADFNAVNIKPQIHENYDGQKIILDEKDNIVLDP TEFPDLLNLKGQTLITSDGHTLLGVDDKAGITGALAMLKYLTEHPEIEHGDVFVAFGPDE EIGCGGQYFDPADFPNVEFAYTLDNGRPGDFEYDTFNASEITIHIKGTVVHPGEAYGLMV NATTLMNDFLSNLPQDQVPEKSRNHDGYFLVLHAQSNVDHADISMIIRDFDQSEYNRKEQ FIRDLVKKMNKKYGNRFTVNIREQYENIYNYIKDKPYIVNLALDAYRKSGLKPNVQSFRG GTDGNFISPKGIPTPNLFNGGGNYHGRYEYVTVEQIDKLAEVLTNIVTEHLRQTRTGRNE KPLEKYW >gi|256541441|gb|ACPV01000033.1| GENE 12 12336 - 13055 405 239 aa, chain - ## HITS:1 COG:BH1257 KEGG:ns NR:ns ## COG: BH1257 COG2256 # Protein_GI_number: 15613820 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Bacillus halodurans # 3 236 187 427 428 140 36.0 2e-33 MIAAAADGDLRIALNILETVHALNPKKITLANVKSFTKQQFFSYDKKATKHYDYLAAYSD SMAGSDTDAALYYLAILLKNGDLASVVRRLREIPYTYIGLANPQQVTQIVTAANQAEKIG MPKAKYPLMFATMLMCISPKSGAFEEIWERLDQDSDHPNRYPMPNSLRDFHYKHAKEITR AGLAESPFQAPHQIAKQNYMPKGLKGKQYYFPKDNQNERRLYEQYLKLHRYIYGEDYQK >gi|256541441|gb|ACPV01000033.1| GENE 13 13058 - 13597 394 179 aa, chain - ## HITS:1 COG:SPy1992 KEGG:ns NR:ns ## COG: SPy1992 COG2256 # Protein_GI_number: 15675782 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Streptococcus pyogenes M1 GAS # 7 165 5 164 422 164 48.0 6e-41 MNFKTPIAEQMRPQTLADMVGQSELLGPGKALRNIIKQHVNISLLLWGPPGTGKTSLAQI IAKENDYPFASFNASIDNKAQLNNIINAYKYQTLVLLIDEIHRMTKNLQDFLLPYLENGH VLLVGSTTENPIMSIVPAVRSRCQIFEFNPLTEDDIAAVLNKACTKVLKLVDHQVEKIR >gi|256541441|gb|ACPV01000033.1| GENE 14 13738 - 14139 377 133 aa, chain + ## HITS:1 COG:BS_yjbD KEGG:ns NR:ns ## COG: BS_yjbD COG1393 # Protein_GI_number: 16078215 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Bacillus subtilis # 1 131 1 131 131 127 50.0 6e-30 MITLYMSTSSASSRKARAWLNKYHLSFKEKNVFKELSKEDVLHLLSLTENGTEDILSTRS QSFKQLKNKLNEDLSLSKMVALITQNPGLLKRPIIADDHRMQVGYNEEDIRQFLPRDIRK AELIEAQRIADAA >gi|256541441|gb|ACPV01000033.1| GENE 15 14204 - 16138 2250 644 aa, chain - ## HITS:1 COG:L37906_2 KEGG:ns NR:ns ## COG: L37906_2 COG1263 # Protein_GI_number: 15672409 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Lactococcus lactis # 273 637 3 398 406 269 42.0 1e-71 MNKNEIALLAPANGQVIALSKTSDPIFSKGTMGDGFGLTPTDNTVLAPVSGTISMIAETK HAIGITTKDGLEVLVHMGVDTVGLKGEPFDVVIKNGQEVKAGDQIATMNIEMIKAKDLDT TIMTLITNSSMKLDGLDVTEGKAEAGDTVARAYLKESKEDSSDKKLSYDELATFIIKNVG GKDNINNLIHCITRLRFYLKDESKANDDILKNQRGILDVMHAGGQYQVVIGNEVTNVYDA VMKQLPGLSDNPSPQTNNQDDGKNPVSRAFSNLIGFITGSMSPVIGVIAASGIIKGLLAL LTLPQLGALLSVKSPVYVTVSAMADSAFFFLPVLVGFAAAKRLGSDPMIAAVIGGFLVYP QMITWGKSMTTMFSLGSWNFQFLNYSYSIFPMILAAWLAKECEQWLKKVLPSYLQMIFTP LITILVVSTITLVITGPIIQGAANGIAVFINWLVSASGWVGGLIIGAFYQLLVIFGLHWG VVPLVAQQIASTGQSSLNAIICATMVSQGAAVLAVAIKSKKADMKELGIAAAISAFCGVT EPAIYGINLRYKKVFASGCIGSAFGGLVTGLMHGTMYGFTGGLIGFSSFFNPAHPTQLNS FYTFLIASAVSIIVSFIAVWVWGYNDNMTMGKKVAKKQRPGSAK >gi|256541441|gb|ACPV01000033.1| GENE 16 16333 - 17058 815 241 aa, chain + ## HITS:1 COG:lin1221 KEGG:ns NR:ns ## COG: lin1221 COG2188 # Protein_GI_number: 16800290 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 9 237 14 237 237 160 44.0 2e-39 MTKAKSELIAQDLASKIKHQQFKEGERLPSENQLTELYGASRETVRKALQQLTSLGLIQK IKGKGSIVLNLEKFSFPISGISSFAELNKSLGMNAKTKLLNDEMVDDLPAIFKKFFPEQK KHAGIYVERLRMINDEPEVLDCDFLFNPPITELPSEEAEKSIYNYLENKLGLDISYATKA ITVEEIDADLQEKLQLDSKEAVLVASHNFLADTTLFQLTLSFHNPKKFKFIDFARRQKIK L >gi|256541441|gb|ACPV01000033.1| GENE 17 17068 - 18735 1279 555 aa, chain + ## HITS:1 COG:SPy2096 KEGG:ns NR:ns ## COG: SPy2096 COG0366 # Protein_GI_number: 15675852 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pyogenes M1 GAS # 1 552 1 538 542 600 54.0 1e-171 MTDLGKKVIYQIYPKSFYDSNGDGVGDIPGIIAKIDYIKKLNVDMIWFNPFFVSPQNDGG YDIADYYRIDPRFGTMSDFEELTKKLKEIGVGVMLDMVLNHCSTENIWFKKALAGDEKYR KFFYLRKAKPDGSLPNNWQSKFGGPAWAKFGDTDYYYLHLYDPTQADLDWHNPEVRQELF KVINFWRSKGVHGFRFDVINVTGKDEKLVDSTGDPSQEKSLYTDTAVVHQYLKEMNRSTF GQDPDSITVGEMSSTTIANSIEYSKPSEHELSMVFTFHHLKVDYKNGEKWSKEPFDFMKL KHLFTEWQEKMDQGGGWNALFWNNHDQPWALNRFGDTGKYREKSAEMLATVTHCMRGTPY IYMGEEIGMMDPHYSSIHDYVDVEAKNAFAALKQKGISDDEAFAIVKTKARDNSRVPMHW DDSKFAGFSESKPWLLPTDQDRINVEKELHEGEIFAYYQKLIKLRKHEQLISDGHIRMFL KDDPQIFAYERFLKDEAKKILVFTNFNGTDHVVPLPEQYQNKNYQLVLSNYSAQDGKLGE NISLKPYEALVIKIN >gi|256541441|gb|ACPV01000033.1| GENE 18 18911 - 19348 410 145 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01098 NR:ns ## KEGG: LCRIS_01098 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 145 1 145 145 281 97.0 3e-75 MLVDSDSFISVEKKLLKQGKLQKFEKETGPVTSLMMISKGRIADDMRYQLVENLAHHPLH IVYKASFDQYDETLNCIFDRQTKKPITGLWYTPQRRDFTEPPKKMVQLFISEIVNNLTDS TGIDLPIWVFINDKAHLAVTKKDLS >gi|256541441|gb|ACPV01000033.1| GENE 19 19609 - 20886 1667 425 aa, chain - ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 37 365 18 356 419 170 32.0 4e-42 MTKKGLTKYLSIGAVTTAALFLAACSNQKSTTSAKNSKTEITMWHAMNGAQQKTLKQLTN KFEKENPNIKVKLENQGNYPQLQGKITSTQQNPNNLPTMTQAYPGWLYQAAQNKMLVNLT PYINNSTYGWGSVAKSNIRPELMKGAQINGVQYGIPFNKSIEVLTYNKTLLKKYGLKVPK TMAELKSVSKAIYEKSNHKIVGAGFDNLANYYVLGLKNEGQTFGRSIKLDSAASKKVINF YADGVRNGYFRTAGSERYLSGPFANEKVAMYIGTSAGESYTKMGVGNKFTYGVAPRPGEY TISQGTDLYVFNHASKAQKNAAMKYMKFLTSKSSQLTWANETGYIPVNDNVLNSKEYLDS KMKLPSVLKDSMKHLYSVPVAKNSDSAYNGMNQIMENILIAANKHQNVNAQIKAGQQKLD SAWRQ >gi|256541441|gb|ACPV01000033.1| GENE 20 21249 - 21614 630 121 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01100 NR:ns ## KEGG: LCRIS_01100 # Name: not_defined # Def: pyridoxine 5'-phosphate oxidase V related favin-nucleotide-binding protein # Organism: L.crispatus # Pathway: not_defined # 1 121 1 121 121 215 99.0 4e-55 MKKLDTTKLTDEQIEFFNSHLPYMATVNANGVPQVGPKASLKAIDASTIQYLEKTKSTAY ENLKNGSVAAIVVADVPTHKAFRVLGHAEIHEGDDYAKKIVSGTDTPEAFVVNIKIEEID A >gi|256541441|gb|ACPV01000033.1| GENE 21 21718 - 22944 860 408 aa, chain + ## HITS:1 COG:lin2791 KEGG:ns NR:ns ## COG: lin2791 COG1409 # Protein_GI_number: 16801852 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Listeria innocua # 14 300 46 337 443 146 32.0 9e-35 MITSKKKPILWLLSDTHLIADSLHDDGLAFQHMRNTSAGKDLDYQEIALTAFVRKVIQEK PTAVIITGDVTFNGAKISGERLANIFKPLTKNKIAFLVLPGNHDIFDGWARKFKGDHEDY TLQISPAIWKEIFADSYHYALHEDSDSLAYSVNLNKQYRLILADSNIYGKQESQTHPITN GRISESQMNWIEKELIDAQQKQQQVLFFMHHNLYRHNKVIYQGYILDNALALQGLLQKYN VKAVFSGHMHAQNIIGPFANRPIAEVAGACFCMTKQEYGQLYLDEAGMQYQVHSFKMESW LTAEEKQKVPTDFSQYLKHLFFSLDEKQLNQIAQALPDKNDANVVIKFVDQLNWNFFVGE SNYSAAQKKEIVNSREYHLIAKYLPGFKRYVDSFLQVEQSSHKLKLKW >gi|256541441|gb|ACPV01000033.1| GENE 22 23652 - 23810 66 52 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKNDTVEQITPRSSSKSVLPATCRQDSDLSWLGLLLSGLSLSGLWTRKKKTK >gi|256541441|gb|ACPV01000033.1| GENE 23 23955 - 26048 1649 697 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01103 NR:ns ## KEGG: LCRIS_01103 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 697 1 697 697 1136 94.0 0 MKINKKLILISTALLAVSPIAAAPLTSNVQTSVAAATKSNATGSLKVIDSHIMLYNSSGN YLDHISAPKKGSTIKYYGKPFFKTVDPGDYSAGELYYPLRKNVYISSDYVTPISGPAYLT AIFNANIYNKSGKKVGFVKKGSVVKYVGKRKITSGKAKYYYEATKNKYRIPYTKIKGKDY YYLGSGRYIKVANIGYVDGYRLITQAPITVTVNKNTSTITRYVNSTGWGTDPNNIELKKG QKITVDYAGQFPQQLTDFDHDHYSYYRIKGTNYWVSEDDLNLPQALENHSDLELADSTKV VLDKKILLYNVDGEKTSQELSKQFYTNTVEETAMYSNHKINEALYLWVPSEKKAELFYHT TGEANAKTNKLDNEGYILASNVKKVEGVKLTPINTAGEAESQSKVATNKSSLSTAIATAE KVQKTDRYKLADYDKKIQFLTYLQNAKTVVGETNASEVAVSQADKFLTNTTKALDGKKLL VRRTDQLTTYEVQKVMNLIYNYYQPQVTGELDVQLYNSKRNWQYPTTRPVWDVTKKSPFW FGYSSDTIRKRKVDISPLITDGITVGKKKKLQSNAYVYTAKGIKTKKLLKKGTPYKIQAI MTIKGQKNVKIDVNKYVKYGNFEASKLKVVKHYYTVQTVTPVVNAQGKKVAEIKSKNTRT KNYVQTYGTKRIKGYDYIKIGSNRYTNMLGFEYVLAK >gi|256541441|gb|ACPV01000033.1| GENE 24 26186 - 29020 2402 944 aa, chain + ## HITS:1 COG:hsdR KEGG:ns NR:ns ## COG: hsdR COG4096 # Protein_GI_number: 16132171 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Escherichia coli K12 # 132 937 203 1054 1188 549 39.0 1e-156 MSNFETSQKDYQEYAKLASSAESLIYSDPRSSLTVFGTFGEQLTKEIMHLDDLGDWELNQ KQRIEKMAYSKNEYPPTVLNALNLIRLRRNKATHDDHFIATKKIALEIDQSAYLVWKWFL EVYSLDKVADYVEPQDQKALIKTQEDKIKALEEKIKQLQQNRVQEVIISPEERERRRQIN VQFAKKHELTEAETRQLIDQQLRDAGWEVDSQKLNNWTQKTEPQKGHNMAIAEWVLPNGQ RADYALFKGLEFYGIVEAKKWDQDIVGQMAQPKEYSKEVPFRSDYRLVSNEMGDYKVPFI YTANGRPYLKQYQEKSGIWFWDARNHKESAYALEEFHKPEDLSLKLSAKNKEEANQDLVD DQDFPDFAHREYQIAAIQAMENAIKDGKKRILLAMATGTGKTRTAIALMYRLLKHKRARR ILYLVDRNSLGKQTANAIKDNKIGTMSISSICGLKELSDKAPEISTKIQIATVQGMIKRL FFSEDSDDKPSVGQYDFIIVDEAHRGYAEDKELSDKEYQFYSQEDYVSQYRRVVDYFDAT AIGMTATPALQTIDIFGKPVYSYSYQQAVLDGWLVDHDAPVIIQTQLSQEGIHFKKGAEV SLFDQDEKTINKEKLPDNMNFDVKDFNKRVITRSFNEVVCDELAQRYLDPNDPNLGKTLI FAATDEHADMVVDLLKKAFKKVSNPVDDDAIEKITGSIRHPNQEIKNFKNETNPNIAVTV DLLTTGIDVPQITSIVFLRRVQSRILYEQMLGRATRLCPEINKSKFTIYDAVGIYEAMNK VTNMKPVVKNPGHNVHYFLNHKDDFFETNEDSAQYQVDMAGAVERKIKRLDDTKRDEFQH LAEINSVDQWARELSKLDKSQFLKQWPKFEQLDHIKPVKPKQIISDAVDKVINVSRGYGH GNQKPADYIENFNKFVKENVNTIPALQVVATRPKDLTFDELKKY >gi|256541441|gb|ACPV01000033.1| GENE 25 29001 - 29405 380 134 aa, chain + ## HITS:1 COG:STM4526 KEGG:ns NR:ns ## COG: STM4526 COG4096 # Protein_GI_number: 16767770 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Salmonella typhimurium LT2 # 10 125 1046 1157 1169 64 30.0 5e-11 MNSKNIKLKLEQNGFKENDLQSAWKNVNHVQTTADIISFIRQAAAGSELVDHDVRIHNAM QKVYGLADWTIPQKKWLKRIENQLISSTVLGPNAEKAFDDNYFFKRHGGYKQIKKIFPEN ADQIIYVLNENLYV >gi|256541441|gb|ACPV01000033.1| GENE 26 29500 - 30801 1327 433 aa, chain + ## HITS:1 COG:alr3406 KEGG:ns NR:ns ## COG: alr3406 COG1106 # Protein_GI_number: 17230898 # Func_class: R General function prediction only # Function: Predicted ATPases # Organism: Nostoc sp. PCC 7120 # 1 406 1 443 463 115 28.0 1e-25 MLIEFTVKNYASFRERTTLSAETGNRLRKLKETNTFSSKNPSLLKSLLLFGPNGSGKSQL IQALQTMEGIVTRPTQAVTDKLNYYPFLFDEKSKIEDTYFEVKLELKNKIYDYSFSYNRE SITSEALTLISGNKEKEIFSRNGNDIQVSNKLLEDSIPKLRYNSLFLYLAQSENDADCIA IYKWFVNDLIFIGSGYPVNIPDELLNLMEDEYLKKEMISFLSFADFNISDIRIREVPTNP LNPQLQKIVENLNIDYPKTTKELYTVHKIYHQNEVINSGELPLTQESVGTRRLFYIVLAM MLAQMNGNEKTIVIDEFDDSLHVELAAALVRIFNSTENLNQFIITTHDIQLLDSDLRIDQ IYLLDKDFHGISDLKSIFDFEDARNKGRHDISFAKRYLQGRFGAVPVIDVDGLLDVLQMI HEKYGDEHGKNKK >gi|256541441|gb|ACPV01000033.1| GENE 27 30782 - 31363 541 193 aa, chain + ## HITS:1 COG:no KEGG:EF3241 NR:ns ## KEGG: EF3241 # Name: not_defined # Def: abortive phage resistance protein, putative # Organism: E.faecalis # Pathway: not_defined # 12 190 15 205 210 96 33.0 4e-19 MGRIRNKTKSNPIIGILCEGESEKQYFTMLKQKYRLANIKVKIVAADLSGKSLVEKAVKF GKYNHLDKTYVVFDRDEHSKDELRKCAKLARKNDITIMFSSIDFEIWILMHFESVTRSYT RKELVQKLSRSAYFNQDYSRFKGNSYREYIFDKVQDAVDHANKLYRKKSDWINDDPFTNI QIYLPEIFKRDNF >gi|256541441|gb|ACPV01000033.1| GENE 28 31378 - 32829 1230 483 aa, chain + ## HITS:1 COG:STM4525 KEGG:ns NR:ns ## COG: STM4525 COG0286 # Protein_GI_number: 16767769 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Salmonella typhimurium LT2 # 1 453 1 481 529 405 45.0 1e-113 MNNQEIVQKLWNECNILRDDGVSYQDYITELTYILFLKMSKEQGEQDDIPQKYQWDNLVS KEGLELSNFYRQLLLDLGNPEVVNSPRINSIYADASTSIHKPADLEKIIKDIDALDWWSA RDEGLGDLYEGLMEKNASEVKSGAGQYFTPRVLINMMVRMTQPKIGDRCNDPAAGTFGFM VAADRYLKDQTDDYSTLSADKEEFQVKEAFSGMELVETTHRLAMMNEYLHGMDGRLELGD SLSSNGKWMKDFDVVLTNPPFGTKKGSDDSVSRDDLTYKTSNKQLNFLQIIYNSLKHNGK ARAAVVVPDNVLFADGVGEAIRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTRGESD KDNTKETWIYDMRHQMRSFGKRNPLSDKDFAEFEKLFCVDDRSKRKETWDKEKNSNGRWR KFTIDEILKRPNTSLDISWMNDEEEHDNRSLKEILDEMNDKSKAIRDAIAELNKALEGID DED >gi|256541441|gb|ACPV01000033.1| GENE 29 32819 - 34261 844 480 aa, chain + ## HITS:1 COG:ECs5306 KEGG:ns NR:ns ## COG: ECs5306 COG0732 # Protein_GI_number: 15834560 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Escherichia coli O157:H7 # 8 474 35 550 584 224 33.0 2e-58 MKTNTLDFDAQALREKILDLAMHGKLVPQDPNDEPASVLLEKIKAEKEQLIKEKKIKKSK PLAPITDDEKPFDIPDSWEWVRLGDVGLLKNGKTPKKEDISSDNIYPYFKVKDMNNNNLY MENVKNWVGEKYSRQVMPKNTIIFPKNGGAILTAKKRILSQDSLVDLNTGGLIPYNDLNH KFIFYLFLSLDIKDFVKGSAVPTINSKKLKETLVPLPPLEEQSRIAAKIAQLFALLRKVE SSTQQYAKLQTLLKSKVLDLAMRGKLVEQDPHDEPASVLLEKIKAEKRKMIKEKEIKKSK PLPPITDEEKPFDIPDSWEWVRLGNIAKRITDGTHNPPPNSHEGKQVISAINIKKGKIDF SLSNRFVSEDQFLKEDKRTNIRKGDVLLTIVGSLGNAAVVDTDKLFTAQRSVAVISSNIL SKFLYYVLISAMFKTQIFANAKGTTQKGIYLSKLINLKLPLPPLAEQNRIVAKIDNLFIY Prediction of potential genes in microbial genomes Time: Wed May 25 05:16:16 2011 Seq name: gi|256541440|gb|ACPV01000034.1| Lactobacillus crispatus 125-2-CHN cont1.34, whole genome shotgun sequence Length of sequence - 1554 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 1338 663 ## Apre_0348 hypothetical protein 2 1 Op 2 . + CDS 1341 - 1554 150 ## gi|227878605|ref|ZP_03996528.1| hypothetical protein HMPREF0506_1529 Predicted protein(s) >gi|256541440|gb|ACPV01000034.1| GENE 1 1 - 1338 663 445 aa, chain + ## HITS:1 COG:no KEGG:Apre_0348 NR:ns ## KEGG: Apre_0348 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 33 433 32 403 418 196 36.0 2e-48 QLYRDKEIDIELSLPDKYNKQDKKKALSKFYRDKINPDDDNDHDFVFLEKQLHKFLKRAV LRFISKDYSNVVLLVGAGASVVTNENGNINSNYGKTMQDISWNIFNQLYGTNNLEEYLDE KDAKIFLPKDQQEKFEKVNFDDESTWFSFPLEEYISNLNLYIQDAEMSGKKVRNPSLSQA KKLKRFILLSILDSVDYNFDSTSKMPFKHDKVILKLLNLIHSDSSKLMVATTNYDLAIEK SLEKDNFTIFDGFEFGNNKEFNDDMYEWVLSKEVNNINTKQVIYKKHVIDLLKIHGSINW IEKENKVTKSTVEEVKSTIRDNSNHVKMIFPSSNKYAQSYEEPYFDLMSRFQNKLHQPNT LLVTSGFSFGDNHISRMIINAIKHNSSLDCLITDYNIHNFDKKTEQEDVNDNWSDLDDLR DRGYNIAFLKATMCSYNYDLSYYVG >gi|256541440|gb|ACPV01000034.1| GENE 2 1341 - 1554 150 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878605|ref|ZP_03996528.1| ## NR: gi|227878605|ref|ZP_03996528.1| hypothetical protein HMPREF0506_1529 [Lactobacillus crispatus JV-V01] # 1 71 1 71 71 122 100.0 1e-26 MSLIDNFFDSSDKNLHVDKCEYYLGKISTVSSIFANIQIENMSLLKYRFNQSDVLRPNTI NYHVLIDSNGT Prediction of potential genes in microbial genomes Time: Wed May 25 05:16:30 2011 Seq name: gi|256541439|gb|ACPV01000035.1| Lactobacillus crispatus 125-2-CHN cont1.35, whole genome shotgun sequence Length of sequence - 16208 bp Number of predicted genes - 14, with homology - 13 Number of transcription units - 7, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 14 - 73 2.5 1 1 Tu 1 . + CDS 103 - 1536 630 ## Apre_0349 protein of unknown function DUF87 + Prom 2175 - 2234 4.8 2 2 Tu 1 . + CDS 2335 - 3186 889 ## LBA1083 putative membrane nuclease + Term 3203 - 3267 14.5 + Prom 3226 - 3285 4.8 3 3 Op 1 . + CDS 3355 - 4371 970 ## LBA1740 hypothetical protein 4 3 Op 2 . + CDS 4383 - 4805 247 ## LBA1740 hypothetical protein + Term 4903 - 4955 6.3 + Prom 4946 - 5005 6.1 5 4 Op 1 . + CDS 5027 - 5362 277 ## LCRIS_01125 hypothetical protein 6 4 Op 2 . + CDS 5362 - 7038 1936 ## COG2759 Formyltetrahydrofolate synthetase 7 4 Op 3 15/0.000 + CDS 7045 - 7509 353 ## COG0597 Lipoprotein signal peptidase 8 4 Op 4 . + CDS 7502 - 8413 1130 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 9 4 Op 5 24/0.000 + CDS 8418 - 9473 975 ## COG0505 Carbamoylphosphate synthase small subunit 10 4 Op 6 . + CDS 9478 - 12672 2527 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) + Term 12688 - 12720 3.3 - Term 12670 - 12715 8.2 11 5 Tu 1 . - CDS 12747 - 14438 1729 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP - Prom 14458 - 14517 9.0 + Prom 14566 - 14625 8.1 12 6 Op 1 . + CDS 14721 - 15137 423 ## LCRIS_01133 L-fucose operon regulator 13 6 Op 2 . + CDS 15189 - 16085 825 ## COG1307 Uncharacterized protein conserved in bacteria + Term 16101 - 16134 4.0 14 7 Tu 1 . - CDS 16015 - 16206 61 ## Predicted protein(s) >gi|256541439|gb|ACPV01000035.1| GENE 1 103 - 1536 630 477 aa, chain + ## HITS:1 COG:no KEGG:Apre_0349 NR:ns ## KEGG: Apre_0349 # Name: not_defined # Def: protein of unknown function DUF87 # Organism: A.prevotii # Pathway: not_defined # 9 471 112 540 540 233 36.0 1e-59 MAMYDKNTFVLPGDLTVGIGDKAYICNDEAIKKYINSLEINKRDNQIEFSSFNLNEKKAI PFKISVDGLFNHHFMIVGATNSGKSTSALAILDKYQKLKGKFLIIDPTGEYKDAFSKNEV NLKTIGKNLFLNTANLTDEQWISLFRPNDNSQVIELLEAIKKLKFVQYYKKHLNKVNLTE AENRFIRNDILDCEGANQEQYKHLQIQWESDKVFNESFDINNLDKQIEKDSLKLSWNKGI KQGTYQFDYFTYGANSWLIRKVKYLIKTYNLKELFLNVDSKTQDKDFGETDKGKKILKDL NKEMLEFQGNDISLYIRLNDSKFSIGLGQVIVDYISNFLLNHDMTKHPTLLFVDEVHRYA LEKDAQDDFISPLATLAREGRKNGIFLFLTTQSPKDVPTIVLNQIGTLLMHRLTGEYEIK AINNFLNKDKLAQLSSLKSGEAILTSVNLMQPVNLNIKASGRTHYSNTPKLIKIKND >gi|256541439|gb|ACPV01000035.1| GENE 2 2335 - 3186 889 283 aa, chain + ## HITS:1 COG:no KEGG:LBA1083 NR:ns ## KEGG: LBA1083 # Name: not_defined # Def: putative membrane nuclease # Organism: L.acidophilus # Pathway: not_defined # 1 280 1 278 281 385 71.0 1e-105 MNKKKIITLVSSTLFLFGGYGAITNPSLSQNVIAKVKTIIKYDHSAEKKTKQIAQENKQT EKKIVSLDKKIAKLRKELKKYTGKHNIESVSAAKLASLNYSGKNIITVNNNDPSFSKSDL STNRGAWQEYGNLDGLNRVTAANALLIQSLMPSARREPLHVDPTGWHNKRVAGGWLYNRC HLIGYQLTGQNNNIKNLMTGTRQLNDPDMLRYEDQVADYVKESRSNYVRYRVTPVFRGNE LLARGVEMEGQSVNSNAVHFNIYIFNVQDGVTLNYANGTSRVG >gi|256541439|gb|ACPV01000035.1| GENE 3 3355 - 4371 970 338 aa, chain + ## HITS:1 COG:no KEGG:LBA1740 NR:ns ## KEGG: LBA1740 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 331 40 371 1376 166 39.0 1e-39 MSYSSQTVHADSVDANSSDSATTSVIKDQTTTEQVASTTKTSNNVDTNGANKTEDTTSIV KTKSTNKVDLSNTDLTTKNNSIDDNSNVGSSIESKNKIATNENKQESTTSTNKQATTVAS TSKTQANTTQNSQYNTADWDGSLDQNSHQYTLTKYKGTGNKNIYIPNTQDFINAGTITTD DKVYITKDLLETIKDAGAVNITIDSEGDKNKVYAKGDMTAALMNSDTLKSADLSHLDVSE ATAIRSMFQNDKNLENVNIAGWNMGQFSDVSQMFSGAEKLVKVDLSDTVYKNVVNAWNFF AHNNALTDVDLTNARNITREIVNGYVQAIKNQMQLPLI >gi|256541439|gb|ACPV01000035.1| GENE 4 4383 - 4805 247 140 aa, chain + ## HITS:1 COG:no KEGG:LBA1740 NR:ns ## KEGG: LBA1740 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 137 492 627 1376 82 41.0 5e-15 MNSNVTNLKLLFSSIPNVKSINLSGWDTSRVTNIYATFGHDKSLESVNISGWNLSNAKSI ASLFDGDSNLSNIDLSNVNFGNNIGDNGDSFGHVGNKLSNVNLTNAKGIPEAVLRAWGQA AKNTKATELSMSTFTVSTDS >gi|256541439|gb|ACPV01000035.1| GENE 5 5027 - 5362 277 111 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01125 NR:ns ## KEGG: LCRIS_01125 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 111 1 111 111 182 100.0 2e-45 MFLGVAGIIYYSWLLIVLFIAFILGYEGNKAISIPGIVVGIIFLLLAVYTWSFSYLQKGG DKILLKLPYRSKVKINQMTLLSSWRNFQVYQLKSDYQSYSVLMMSRKKNKQ >gi|256541439|gb|ACPV01000035.1| GENE 6 5362 - 7038 1936 558 aa, chain + ## HITS:1 COG:SPy1213 KEGG:ns NR:ns ## COG: SPy1213 COG2759 # Protein_GI_number: 15675177 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 558 1 556 556 568 53.0 1e-161 MKSDIEIAQETKELPINEIAAKVGLKEEDLEPYGHDKAKITWQAINRTRASKKLGKLVLV TSISPTPAGEGKSTITIGLGDAIHNQLHQNTMIALREPSMGPVFGLKGGATGGGKAQIIP MEDINLHFTGDMHALTAAIDTLAALVDNYIYQDNSLNLDPDRILLKRGLDVNDRALRKIT VGQGSKFNGVEHQASFAITVANELMAILCLATDINDLKSRIGDMLVGYTKDDEPVYVKQL GFQGAIAALLSNALKPNLVQTLEHTPALVHGGPFANIAHGANSVIATNLALHLSDYVLTE AGFGSDLGGQKFMDFVSRHLDKTPDAAVVVATVRALKYQALGSTDHLDEENLDALKKGFK NLERHMNNMRSYNVPVIVLINRFASDTDQELALLKQLIEEQGINAEVVTYHGEGSKGGVE AAQAVVDLANSGKADLTPTYADDDDVKDKIEKVATKIYHAAGVEYSDKAEKQIAELRKLG KAQLPVIIAKTQYSFSDNKNELGAPTDFKLHVKGISLKNGAHFIVVTTGHVLDMPGLPKH PAALDIDVDNNGKISGLF >gi|256541439|gb|ACPV01000035.1| GENE 7 7045 - 7509 353 154 aa, chain + ## HITS:1 COG:SPy0826 KEGG:ns NR:ns ## COG: SPy0826 COG0597 # Protein_GI_number: 15674864 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Streptococcus pyogenes M1 GAS # 4 143 5 144 152 117 49.0 9e-27 MQFLYLIISLVVVLADQGLKNYIVAHYAVGEVHQIIPGLLSFNYLQNNGAAWNILTGQMW LFYIISIIAISVCLYFLFNKKYKNTLFDVGLALILGGIVGNFIDRLHLKYVVDMLQLDFV HFNIFNIADSAITVGVILVFIYLIFIEGKEEQHD >gi|256541439|gb|ACPV01000035.1| GENE 8 7502 - 8413 1130 303 aa, chain + ## HITS:1 COG:SP0929 KEGG:ns NR:ns ## COG: SP0929 COG0564 # Protein_GI_number: 15900809 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Streptococcus pneumoniae TIGR4 # 7 300 1 295 295 340 59.0 2e-93 MTKEYSLEVKNEKGRLDKFVSEQIPDLSRTRVKELVKDQNILVNGKVEKVSYKIQAGDKI EVNIPAVKPLDVIPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHTKA LAQSPEGFRPGIVHRIDKDTSGLLMIAKTAKARESLEDQLAHKTNKRLYWAIVHGNFAEE NGVIDAPIGRNPYDRKKMAVVETGKKAITHFKVLEQFKDYSLIECQLETGRTHQIRVHLD YIGHPVAGDPLYGPRKTLKGHGQFLHAKVLGFKHPSTGEWLEFSVEPPQIFQETLAQLEQ TSK >gi|256541439|gb|ACPV01000035.1| GENE 9 8418 - 9473 975 351 aa, chain + ## HITS:1 COG:L43866 KEGG:ns NR:ns ## COG: L43866 COG0505 # Protein_GI_number: 15673583 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Lactococcus lactis # 2 350 3 352 357 246 39.0 4e-65 MKRYLILEDGSSFPGEGIGASIISTGELAIQTANFGYQEALTDPTNAGKILVFTSPMIGN NGINAIDYESIDPVVKGIIANDIALNISDSENFEDLSSFLKEKNIPAIFKVDTRALVHRL MEEGTIKASIMDTNDEHAFDQIKALVLPKNKSATVSTKNAYASPNVGRTVAVLDLGLKHS MLRALSLRKVNTTVLPYSASPIDIENLRPEGMIISNGPGKPEEVINQLTPVLDHFYGKYP ILGIGLGFLTLSDYLGFELVQLPQEFDGINYPVIEQNSNAIWQTAMNIDQLVLPDSVKMN MNREYFDLHSELMAGFWNSKDKLIATAFNPEGAPGTNDADEIFDYFLQMMG >gi|256541439|gb|ACPV01000035.1| GENE 10 9478 - 12672 2527 1064 aa, chain + ## HITS:1 COG:BH2536 KEGG:ns NR:ns ## COG: BH2536 COG0458 # Protein_GI_number: 15615099 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Bacillus halodurans # 1 1064 1 1058 1062 559 32.0 1e-158 MPLENDLDKVLIIGSGPTLIGSVAEMDLMATEAIDALTEEGIQVVLVNPNPATISTDKKL GVTVYLEPMTLDFLKRILRMEEPDAIMTAYGSTNGLKVAHKLLQDGVLEQMGIQLLTLNS RALQMGNQQKKTELLTKLHIDTGQSWELNQSIQDNLDNALESINDKVTFPVLVTKYNRFV HNEHLQFANPTDLISYFKEEKQNDNFTWKNYRLTEDLSSWEEVIVDVIRDKDGNLAFINF AGSIEAVGINSGDSAVVMPSLTLNNDHIQELRITVRKIMSNLDLIGFASFHFAIKHHGTQ IRSKLLTIRPRLTRSSVWAQRIGMYDVGYVVSKVAIGYRLNEITDPLSGLNASIEPTLDA VAIKMPYWSFAESGYNHYLLGSRMQASGEAMGVGRNFETAFLKGLDATINLELGWHAFIK EKEKSTADILNDLAHPDELHLVKLLAAIDQDIPYSELQKVTHLHPVYYQKLLHIVRLGKK LLQEKEQPSRDLLQEAKVYGFFNPLLAKILQKSVTEVRSLINKIDLQPSYLKIDGSAGIY KPNVCAYYSAYDVQNEAQALNAEKKILILGMLPLQVSVTSEFDYMIAHAADTLHKYGYVT VLLSNNDESISSRYKNIDRVYFDSITVENILTVAKRENISDVLVQFSGKRISALSKELEK CGLHVIGQKANDDPRDKITTLLDQQSTTLKRVPALNKTTDTDQVFAFASKYGFPLLIGGM NKENKQKSAVVYDVPAIEKYLAENQLDQITISRFIEGHKYEVTAISDGTNVTLPGIIEHL EQTGSHASDSIAVIQPQNLTEEQQKKIEQESIKLIKQLKTKGIFNLHYLFVDNDLYLLQI KPYAGHNVAFLSKSLDKDITTCATEALIGKNLAELGYPNGLWQNSDFIHIKMPVFSFLNY SSGNTFDSNMKSSGSVMGRDTQLAKALYKGYEASDLHIPSYGTIFISVRDEDKNRVTQLA RRFDRLGFKLIATEGTANMFAEAGITTGVVEKVHKDPRNLLDKIRQHKIVMVVNITNLSD AASEDASRIRDEALNTHIPVFSSIETAELILDVLESLALTTQPI >gi|256541439|gb|ACPV01000035.1| GENE 11 12747 - 14438 1729 563 aa, chain - ## HITS:1 COG:BS_yloA KEGG:ns NR:ns ## COG: BS_yloA COG1293 # Protein_GI_number: 16078628 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Bacillus subtilis # 1 560 3 570 572 390 39.0 1e-108 MAFDGLFIHSLLKDLVPTLVGGRLSKIYQPFDQDLVLIFRKDRKNYQFLISANAQYPRMY LTKQNIANPDKAPIFVMVLRKYLEGSVLQSIEQVGLGRIVNFHFSNRNELGDQVKLMLSV ELMGRHSNVILYNQEDNHIIDLLKRINPDENRARVLLPKAKYELPPLKPGLNGLTLSESE FKQLSSENQPNEIAQKMDGLDKDDRTELLGYLEDDYTYSSFKTFFNQFDNPRAFILKTPR NKRKIFCYLPYHLDLEKESSNPDLNAGLDEFYEYQATRDWVKQRAGQVERVVKNEQNKLT KKVKKLEKQLDLAENSEGYRIKGEILNANLAQVKPGMTKVSLPNYYENNAPLEIKLDPAL SPARNAQKYFTRYKKLRDSIKHINEQLRIAKDDIRYFDSIQTAIDNADPQDIDQITDELI NQGYLRKQKKNKRRKKIIERNLNEFKLSSGKHVLVGKNNYQNDWLTLKKANKSDYWFHVK NMPGSHVILRDDQPTDQDIKEAAEIAAYFSKAKNSAHVQVDYVQDKRVKKPNGAKPGFVI YTGQNSIEVTPEEKEIMNKKIEK >gi|256541439|gb|ACPV01000035.1| GENE 12 14721 - 15137 423 138 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01133 NR:ns ## KEGG: LCRIS_01133 # Name: not_defined # Def: L-fucose operon regulator # Organism: L.crispatus # Pathway: not_defined # 1 138 1 138 138 214 100.0 5e-55 MDVLFFSTIADQVKKEINHKCGLNISQTRILLFFDENKNQALAMGKLAEALNISLSTLSR QLQQKKTMSFINITRSEKDSSKIVNLSEAGVTKAKELKKTLTKIENLLFVYFDRDAANLF IKQLNQVADTSMTLEKME >gi|256541439|gb|ACPV01000035.1| GENE 13 15189 - 16085 825 298 aa, chain + ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 8 290 4 282 283 209 38.0 5e-54 MGRVNKLKIALVTDSTSVLTDQEVKNNDINVVPIPVIVGDKEYSEGVNITSTQLFEMERQ GAAFPKTSQPSMGQMIELCNKLHGEGYEAIIAITLSSGISGFYQNMVNMAHNNPEYNLYP YDSKMTVRLQGYLVLAAARMIKNGMEPEAILKKLDEIRKTIDEFFVVDDLKNLSRGGRLS NAGAFIGTMLQIKPLLTFNDEGKIVAFDKIRSLKRAVSKVEKLTLEKTANLPYKDKLRLF VFHSNDLKQAEQIKQFVNENFPDKPVDVAEFSPVIATHLGEKSIAIAWMVDIDKLELK >gi|256541439|gb|ACPV01000035.1| GENE 14 16015 - 16206 61 63 aa, chain - ## HITS:0 COG:no KEGG:no NR:no NFTITFSTSISTVIFNYKSIIVKRVNKKDHSLYYGLWLFVLILIRAYQYQPSMQLQLISL LSV Prediction of potential genes in microbial genomes Time: Wed May 25 05:16:58 2011 Seq name: gi|256541438|gb|ACPV01000036.1| Lactobacillus crispatus 125-2-CHN cont1.36, whole genome shotgun sequence Length of sequence - 6413 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 4, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 26 - 85 6.2 1 1 Tu 1 . + CDS 215 - 2092 1485 ## COG1193 Mismatch repair ATPase (MutS family) + Term 2093 - 2145 7.6 - Term 2077 - 2140 11.3 2 2 Tu 1 . - CDS 2146 - 3213 986 ## COG0582 Integrase - Prom 3448 - 3507 9.2 + Prom 3589 - 3648 7.3 3 3 Tu 1 . + CDS 3716 - 4174 672 ## LCRIS_01138 hypothetical protein + Term 4175 - 4230 9.1 - Term 4161 - 4215 10.2 4 4 Op 1 . - CDS 4219 - 4830 622 ## LCRIS_01139 diaphanous protein - Prom 4858 - 4917 6.7 - Term 4940 - 4969 1.4 5 4 Op 2 . - CDS 4980 - 6095 1075 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) - Prom 6338 - 6397 5.9 Predicted protein(s) >gi|256541438|gb|ACPV01000036.1| GENE 1 215 - 2092 1485 625 aa, chain + ## HITS:1 COG:CAP0099 KEGG:ns NR:ns ## COG: CAP0099 COG1193 # Protein_GI_number: 15004802 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Clostridium acetobutylicum # 8 624 7 624 629 404 37.0 1e-112 MKNINNNQNLNFTQVKDILAQQAITIAAKEQLSSVQPSSNLHKVEQLLNETEEAVKILKL RQHIPFASSEDIEHLITKAEKGLILTPDDLEKVAEFLRVNRLLQRFLARHEQLAPLLNAY VQDMTLLPDIEDAIYTTIEHGQVRDEADRELAKMCRDLKKSVTELKTALNHFLTSKPNQK MIRDAMIVEKEGYATIPIKANYKNQLSGTIVAVSNGGQTVYFQPAKVVRLNQQITNLKAQ IRNLELAILGALTAKIYDVKDDIKRNIELITLLDMIFARGKFAQKYNCIRPKINRENSLV LRAVRHPLIINPVPLTLELTQENSVLMITGPNAGGKTVALKTTGLMILMTELGLFLPSDK PCDIPLMDDVFTLIGDHQDLDNSLSTFSAEMKDIAMITKYAQFHSLVLLDELGTGTDPNE GSALAIGILQELYLRGCLIMATTHYSSIKDFAKQHDGFITAAMDFDLKNLQPTYKLKIGS IGNSRALWIAKKSGIPENVLHQAEAILAGNNLPLSLKKRFVHQRKNKSNLVVKKEFHKGD IVYATNLKEEGIFYKYLPTQNAAKIFVTKEFVEVPLRRLQLRRLAKDLYPKGYNLDLLFV KDWQDYKFNRDLDRGSKKAYKKLKH >gi|256541438|gb|ACPV01000036.1| GENE 2 2146 - 3213 986 355 aa, chain - ## HITS:1 COG:SP1159 KEGG:ns NR:ns ## COG: SP1159 COG0582 # Protein_GI_number: 15901024 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Streptococcus pneumoniae TIGR4 # 23 349 26 356 356 263 43.0 5e-70 METAKYLELIQIEVNKLPDFVKQFNLGTNHSLTTTYQYLTEIRRFFDWLRQENISSASDN AHVTTDTLANLRRNDIMLYIDYLGHTRNKQGRLNSPTTINRSINALRSLFKFLTITADNN HGEPYFERNVMLKINSLNDTQTLNYRAHVLESHMYTGKLKFEFLTFIDQDYINHCNKQAK IGFKQNKERDMAIAALILGTGIRVSECAGVDLSDLNLKDAVLDVTRKGGQKDSVPIAEWT LPYIKRYKGIRNERYHADSKQVAFFLTQWHGQTRRITTNAIEKMINKYSAAFGHPLTPHK LRHTVASELYEVTKDQVLVAQQLGQKGTSATDLYTHVDQKKQRAALNEISKKNHD >gi|256541438|gb|ACPV01000036.1| GENE 3 3716 - 4174 672 152 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01138 NR:ns ## KEGG: LCRIS_01138 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 152 1 152 152 247 99.0 1e-64 MTEEISVNFQAKNPSGIKLLNRLYDGHLVLNDIGVRLDEQLNNEDEELTVPTQADVDNLS ETFGKTVTVFSDIADAYGDVNNFAKNFGGTTKIFAQKLITELVDFNNGIADIGDSEGGLE NYDNDKLNDWINQVMSDIVETNEAFNALIDDK >gi|256541438|gb|ACPV01000036.1| GENE 4 4219 - 4830 622 203 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01139 NR:ns ## KEGG: LCRIS_01139 # Name: not_defined # Def: diaphanous protein # Organism: L.crispatus # Pathway: not_defined # 1 203 1 203 203 348 100.0 6e-95 MKFKKKLALFLGLGVLLLSLTGCSDFQNWELSMRSKIGALPLTVSTYDSNGQKIDQIKAK SVNIHTDKKMSQKSSNGTEHSSVIDVDYGNNRMIHVGSTMIAYEGLKNYEDAFNKKVKID DQNRSVPLLNTMYQNFKNDWNGSSRVVMIRSQLGMPIAVFIGNHVSIHKSDMKNATQFVI DGHRLFVYRADYTVYPMSSLKSN >gi|256541438|gb|ACPV01000036.1| GENE 5 4980 - 6095 1075 371 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 37 285 157 391 444 119 35.0 1e-26 MLTNAGVTLLSQMTRFSDSESIVQASSTSVVAKALGIDVASYQSADLTAHAKAGSQFAIV KVSEGTSYRNPKAANQIKSAIANDMMPMAYHFATFSSSSSAAKREAQYAISSAKALGLPA GSYLACDYETGQGNIITNGKNVTAKAIIAFMDQIKAAGYQPLLYASSSVLQNNINTPSIV NKYPNSLWVAAYAISGRVDQPNFKYFPSMDGVAIWQFTDNWRGMNTDGNITVLPLSIAGN AAVSQAPKASNTKKTATVMYKSYVYDKNSNRTNDFYNAYSSIAYYDNKVRIKGKSMIRVG EDKYVMASNVLGNSRVFKADAKVYKNDGTINTKWSTKKSGSPIKTYGPKHYINNEAYYRI GKNAYVKADKF Prediction of potential genes in microbial genomes Time: Wed May 25 05:17:04 2011 Seq name: gi|256541437|gb|ACPV01000037.1| Lactobacillus crispatus 125-2-CHN cont1.37, whole genome shotgun sequence Length of sequence - 1444 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 74 - 334 322 ## COG2261 Predicted membrane protein Predicted protein(s) >gi|256541437|gb|ACPV01000037.1| GENE 1 74 - 334 322 86 aa, chain + ## HITS:1 COG:SPy1265 KEGG:ns NR:ns ## COG: SPy1265 COG2261 # Protein_GI_number: 15675224 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 5 80 4 79 82 76 65.0 1e-14 MLHWIWVLIVGGVIGLIAGALTGHGKSMNWIANILAGLVGSSLGQALLGEWGPKVADMAI VPSILGAVILVIVVAFIMNKIRPATD Prediction of potential genes in microbial genomes Time: Wed May 25 05:17:05 2011 Seq name: gi|256541436|gb|ACPV01000038.1| Lactobacillus crispatus 125-2-CHN cont1.38, whole genome shotgun sequence Length of sequence - 1024 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 150 - 183 3.1 1 1 Tu 1 . - CDS 193 - 888 493 ## COG3619 Predicted membrane protein - Prom 916 - 975 8.6 Predicted protein(s) >gi|256541436|gb|ACPV01000038.1| GENE 1 193 - 888 493 231 aa, chain - ## HITS:1 COG:SP1104 KEGG:ns NR:ns ## COG: SP1104 COG3619 # Protein_GI_number: 15900971 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 14 225 16 227 234 134 34.0 2e-31 MSLKEVLNSNRPAESRQLACALTFCGGFIDAYTYIQRGHTLSAGQTGNVIFFSSALADHN VPGMINRASTFIAFSLGLLLVGLFHKYVKSHYWRVFCLFPILAICIVVGFLPKSVPNYYI VPAIAFGLAIQNASFSKIEGMGYNNAFTTGNLKKSVVAWSAFFFGEDKSKHTAAVNYMML TIAFAVGAIISALLQKLLVLKTIWIAVIFLTTINLVYIIALRRNKKIDFSK Prediction of potential genes in microbial genomes Time: Wed May 25 05:17:09 2011 Seq name: gi|256541435|gb|ACPV01000039.1| Lactobacillus crispatus 125-2-CHN cont1.39, whole genome shotgun sequence Length of sequence - 12249 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 5, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 88 - 147 6.2 1 1 Tu 1 . + CDS 168 - 533 312 ## LCRIS_01143 transcriptional regulator, XRE family + Term 534 - 586 14.3 - Term 522 - 574 16.9 2 2 Op 1 . - CDS 575 - 1069 568 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - Prom 1161 - 1220 4.0 - Term 1204 - 1241 1.2 3 2 Op 2 . - CDS 1260 - 2195 1271 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase 4 2 Op 3 . - CDS 2225 - 3199 837 ## COG0583 Transcriptional regulator - Prom 3252 - 3311 6.0 - Term 3262 - 3312 11.7 5 3 Op 1 24/0.000 - CDS 3347 - 5806 2311 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 6 3 Op 2 . - CDS 5825 - 7771 1903 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - Prom 7828 - 7887 5.2 + Prom 7791 - 7850 7.0 7 4 Tu 1 . + CDS 7870 - 8505 546 ## COG0344 Predicted membrane protein + Term 8509 - 8556 7.7 - Term 8545 - 8590 3.1 8 5 Tu 1 . - CDS 8623 - 12150 3058 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family - Prom 12182 - 12241 6.9 Predicted protein(s) >gi|256541435|gb|ACPV01000039.1| GENE 1 168 - 533 312 121 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01143 NR:ns ## KEGG: LCRIS_01143 # Name: not_defined # Def: transcriptional regulator, XRE family # Organism: L.crispatus # Pathway: not_defined # 3 121 1 119 119 180 99.0 1e-44 MLVNINLGEEISRRRREQKLTQEDLAELSDLSVNFISRVERTKDQNISIQKLDSIAKALN TTTPDIINNAYRAKKIKPEKIHDNNTPVFMKKVINELRKLPEPKAERVCKSLITLLKEMN N >gi|256541435|gb|ACPV01000039.1| GENE 2 575 - 1069 568 164 aa, chain - ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 2 158 38 194 194 221 68.0 3e-58 MTVENFIRLAQKGYYDGTIFHRVISDFMIQGGDPEGNVTGGESIWGHPFEDELSRELFNI RGALSMANSGPNTNGSQFFIVQNKNMPKRYIKQMEPAGYPKEIIHAYKQGGTPWLDGRHT VFGQVITGMDVVDKIAKSKKDKMDKPLEDITIDSIQVQGSKFDD >gi|256541435|gb|ACPV01000039.1| GENE 3 1260 - 2195 1271 311 aa, chain - ## HITS:1 COG:SP1534 KEGG:ns NR:ns ## COG: SP1534 COG1227 # Protein_GI_number: 15901378 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 311 1 311 311 338 59.0 6e-93 MEKEFVFGHQNPDTDAIGTAIAFSYLQNKLGYNTEAVALGEPNDETAYALKKFCFKAPRV IKEAAPEVKSVMLVDHNEPQQSVSDIDKVKVTHVVDHHRIMNFNTADPLYYRAEPVGCTS TIVWRMFNEFGIEIPENYAGLMLSAIISDTLLLKSPTTTDKDKKAVEALAKIAGVDYKEY GLAMLKAGTNISDKSEEELIDLDAKSFELNGHNVRVAQINVVDLPEALERKEAFLKAMDA SSKDNGYDMFMLLITNILDSDSEALVVGSDETKSLFEKAFNKQLSDSEVELPGVVSRKKQ VVPPLTDAFNA >gi|256541435|gb|ACPV01000039.1| GENE 4 2225 - 3199 837 324 aa, chain - ## HITS:1 COG:lin1846 KEGG:ns NR:ns ## COG: lin1846 COG0583 # Protein_GI_number: 16800913 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 8 225 1 212 295 89 26.0 7e-18 MSKSDTILSAKSLRYFLQLIETMNYTQAAQILGITQPALTQQVKKLERAIGAPLFGQMGK KLYLTEAGKEMEAAAIELLNTINGVISDIQEYTQSDKGNISIGILESVHVDLFYQFLRYF NKKYPEVTFTVDYFDRKELWHRLDSNMIDMAIMYMPDTTNKTGANFRHQYNHRDICPEHI VVLTHKDNVEAGGTYSVTRFGNRKWVAYPENYYLSRLMRLNFSKKIDLVTPFKIASTKEM IKIAENTDLDTYVDQTYYEAHKDEINLTPVYIKNMPEFTTACVYRRGKLDVPRMKKLLTE LQIFLDNNLDRNHNFSKLLSEEIK >gi|256541435|gb|ACPV01000039.1| GENE 5 3347 - 5806 2311 819 aa, chain - ## HITS:1 COG:SPy0910 KEGG:ns NR:ns ## COG: SPy0910 COG0188 # Protein_GI_number: 15674931 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pyogenes M1 GAS # 7 803 4 810 819 820 52.0 0 MATKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDK PFKKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMR YTESRLSKISNMLLQDIDKQTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATE IPPHNLGEVIDATIYLLKHPDASLEDLMKYVKGPDFPTGAIVMGTKGIKEAYKTGRGRIQ VRAKTTIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLS IVIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILASYLEHEEDVV TKRTKFDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYNKFTEKQA EAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRATLEKEIIKELNAVKKEFAN PRRTQISEESAKVEIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTNDDDNGLPDGDKV VYENTLSTLTNLYLFTNKGNVIYRPVHELIETKWKETGQHLSQEIGLDSDEQIIRVFVFD KLNTDCNFILATNDGYIKQLELANLQPTRTYKSRAMTAIKLKGKDSYVVGVDLIKSDNHK EITLFTHRAYAIRYDVSEIPTSGAKAVGVKSANLKDDDYIVNYVLVDSKYVDLMHVGLIT QRGAFKQFKLKLVNKVSRAKRGVLVLRELKNKPHRIVALMPYAQDHLLHVTTSSDRHVNI KTTDYPLGDRYSNGSFVIDTTVDGTPVSIELGRPISSQN >gi|256541435|gb|ACPV01000039.1| GENE 6 5825 - 7771 1903 648 aa, chain - ## HITS:1 COG:BH2140 KEGG:ns NR:ns ## COG: BH2140 COG0187 # Protein_GI_number: 15614703 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Bacillus halodurans # 7 647 9 648 655 848 66.0 0 MAKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEI DVIIHSDNSVTVRDFGRGMPTGMHKSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS SVVNALSSYMKVRVVRDGKAYEEEFKDGGHPVGTLKCVGKTKEPTGTTITFKPDETIFST TKYKYETIQERIREYAFLLKGVKFFLTDEREPEHHDVFQYDDGIKSFVKYLNEGKGTISD VFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYAKK QGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYEKM SYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRNPK KNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTIGA GVGTEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEHGKVYIALPPLYRL QKGRGKKTQVQYAWTDEELADDEKKMGRGYSLQRFKGLGEMNAEQLWATTMDPQSRMLIR VKIDDAALAERRVTTLMGDKVAARRKWIEENVKFRMGEDGSILESEDE >gi|256541435|gb|ACPV01000039.1| GENE 7 7870 - 8505 546 211 aa, chain + ## HITS:1 COG:SP0851 KEGG:ns NR:ns ## COG: SP0851 COG0344 # Protein_GI_number: 15900736 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 9 199 6 204 213 151 49.0 8e-37 MFALKFASLFILAYLIGSFPTGVLVGNIFFHKDIRKYGSGNIGTTNTFRVLGPAAGIIVF IVDFLKGTFATVLPIIFKLGPHYLCLIFGLAAILGHAFPVFLKFKGGKAVATSAGFLLGY NVHFFLICALIFFPILFITSMVSLTSLISVVLIFIASFFFHDLALSIISGLLVILIYWSH RSNIIRIKHHQENLVPFGLVYWYKKKHTNSN >gi|256541435|gb|ACPV01000039.1| GENE 8 8623 - 12150 3058 1175 aa, chain - ## HITS:1 COG:FN1160 KEGG:ns NR:ns ## COG: FN1160 COG0553 # Protein_GI_number: 19704495 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Fusobacterium nucleatum # 525 1175 456 1087 1089 450 40.0 1e-126 MSRWHRLFPERVFDRGEIYYGNDMVENIQLAQDQEHFTAQVQGGMGRSYTVTGRLRLDGR ASELDCNCPWANKGHRCKHEVAALLAVENEQENEHNVKVPFADLISEHLKQMIAHKSPVL NPLNLIGNMKFTKKSYDQALELNDHWSISSCRHFDDKMRKYEYFWEIVTEDNELITLSVQ FTRWQIISIKFDSDFSRIEKDSVRILALFYFINEYLDDDPFDLTNQAAEDLLEFYSDAST QNDEPIILRASIDKYNNIPSLTFKLGKNKHLYKVKDLNQLVDASRHSSSLKLGKFFNEPI NQAKMDIDSQHWLSFIEKIIDARNLNEEFYYNYSSQVGRITLENSVADEVNDLLYQGVKL YSNEQPIGYTTDQLDLNIKIETQKSSALVSVEDLPVSTIITGSHAYYGYYKDVWIKYIGL TPASLHNLGLQPGAEMQFSKKTVAKFAHNILPKFEQTKFILVSGTDELKAILPPEAHFLF KLDYRVGSILCVARVQYGDAQYELNQGYTEEDRRDVEKETAAWKHINTYFSDYQHGRYVL SNEDSDVVQAFLDDGINELKRLGEVQITANFRSLLKGIKINLDVGVGINLTNELLDIDLA DQKMSWEDIQAALKAYQEKRKYFVLKNGMLAKAEQPTIEQLAQTLHDLGISFKDFIHGKL HLPAYRAFYFAKQMKAANALHFSTNESFNTLINDLAKNQLKQNQIPVSLQNILRPYQKIG FNWLSTIVNYKFGGLLADEMGLGKTLQIISLLLARKEKMQNQLPSLIVAPASVIYNWQAE VKKFAPSLNVALLDGTKKERERLLLDAKKYNLLISSYQSLNRDLEAYQNLIFDVEVIDEA QNIKNQQSVTAKTVKVIKAHHKLALTGTPIENKLSELWSIFDYLMPGFLGLYPDFRKKYE LPIVKEQDKEAEDQLANMIIPFILRRLKKDVLRDLPDKDEEIVPVKMNKKQADLYNMQTQ KIIAQLNGQGDEDFKRSRFQILAQITKLREICCDPHLLYENYHGKSNKLIATIELIKNNL ANGHKILLFSQFTAMLDILHENLARLRLPLFTITGSTPKTKRQEQVQKFNQMAQPGVFLI SLKAGGTGINLTGADVVIHYDPWWNLAAEKQATDRAHRIGQKHSVKIYKMVTEDSIEERI IALQQKKAELADIILQNDQIADATMSKDDLIKILK Prediction of potential genes in microbial genomes Time: Wed May 25 05:17:13 2011 Seq name: gi|256541434|gb|ACPV01000040.1| Lactobacillus crispatus 125-2-CHN cont1.40, whole genome shotgun sequence Length of sequence - 4851 bp Number of predicted genes - 9, with homology - 8 Number of transcription units - 4, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 39 - 98 8.0 1 1 Tu 1 . + CDS 324 - 515 79 ## LBA1120 hypothetical protein + Term 647 - 694 8.4 2 2 Op 1 . - CDS 441 - 620 142 ## - Term 635 - 681 9.0 3 2 Op 2 . - CDS 682 - 906 251 ## LCRIS_01152 replication initiator A, N-terminal - Prom 1078 - 1137 7.3 4 3 Op 1 . - CDS 1152 - 1703 635 ## COG1335 Amidases related to nicotinamidase 5 3 Op 2 . - CDS 1715 - 2470 479 ## LCRIS_01154 integral membrane protein 6 3 Op 3 . - CDS 2517 - 3173 626 ## LCRIS_01155 putative protein without homology 7 3 Op 4 . - CDS 3199 - 3807 407 ## LCRIS_01156 putative protein without homology - Prom 3832 - 3891 3.6 - Term 3857 - 3899 2.4 8 3 Op 5 . - CDS 3905 - 4261 412 ## LCRIS_01157 putative protein without homology - Prom 4345 - 4404 8.0 + Prom 4312 - 4371 8.0 9 4 Tu 1 . + CDS 4391 - 4624 183 ## LCRIS_01158 putative protein without homology + Term 4633 - 4670 -0.0 Predicted protein(s) >gi|256541434|gb|ACPV01000040.1| GENE 1 324 - 515 79 63 aa, chain + ## HITS:1 COG:no KEGG:LBA1120 NR:ns ## KEGG: LBA1120 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 61 75 135 189 68 52.0 5e-11 MDITAVSLLLVPNVHDKKQEIERIDHLLNQINQIGTSYLLNDVQSNAVGSAMNNAIYPAN RAG >gi|256541434|gb|ACPV01000040.1| GENE 2 441 - 620 142 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYPHQDKALNEHLRNFAVYDCIQYYFHFDYFDKFALASSVSRINSIVHGGTYSVTLNVI >gi|256541434|gb|ACPV01000040.1| GENE 3 682 - 906 251 74 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01152 NR:ns ## KEGG: LCRIS_01152 # Name: not_defined # Def: replication initiator A, N-terminal # Organism: L.crispatus # Pathway: not_defined # 1 74 1 74 74 129 98.0 4e-29 MRMIDSQTNGWVDADGNMYIIYSNQELMDDMHCNSYTVKRLKKELVNHDLLLEEDAPAEH DDRLYPLRINENEK >gi|256541434|gb|ACPV01000040.1| GENE 4 1152 - 1703 635 183 aa, chain - ## HITS:1 COG:SA1734 KEGG:ns NR:ns ## COG: SA1734 COG1335 # Protein_GI_number: 15927492 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Staphylococcus aureus N315 # 3 181 4 182 186 208 54.0 6e-54 MAKALLVIDYSKDFVADDGALTCGQPAQAIDQRITELCKQFLQNKDWVIFPMDAHLKNDP YHPETKLYPPHNIIGTAGREVYGQTGKWYLENKDNDHVLLMDKNRYSAFQNTNLDNYLRE RHIHDLTLTGVCTDICVLHTAIAAYNLDYEITIPRSAVATFTSNGDEWAMAHFKNALGAN IAD >gi|256541434|gb|ACPV01000040.1| GENE 5 1715 - 2470 479 251 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01154 NR:ns ## KEGG: LCRIS_01154 # Name: not_defined # Def: integral membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 251 1 251 251 382 98.0 1e-105 MLLVPALFVLALRQLSHEANQKLVNTFGFNSQIIVGGLGIIVHELSHLIMAIIFGHHINA VSLLRIPSNTNDMSLGYVKHTWSPTSTYQKVGNAFIGIAPVLGCTLLIYIIMRTLNTPIS LVQNQLTTQLLSNGNALNWNFLTHSWIYIFELFQLNFDSIWHSIVALLLVISLCFGGFDL SEADISSGKYAFLGLIGITFIMLLLVSFLGFHAALLPFLVNITVWIYLVFIISIVILAII NLIMYILNIIL >gi|256541434|gb|ACPV01000040.1| GENE 6 2517 - 3173 626 218 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01155 NR:ns ## KEGG: LCRIS_01155 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 218 1 218 218 398 99.0 1e-110 MTDFTEFESTIFSSDDNFAIRKIKHNVILTYCTQDGEKEYESLSKNTYRVFFENNLEVSR LYPPDEFSHNWLIQILMPQLSIDSLKSMAIALTTLERIAQSQEGMQLSEYVKNSELVEIK SWFDLRNKLRKISKAYSLIKQSTDQTTQWLGSDGHRYREVILANSLRLNYGQDEVVRLIP IKNNWVIQFVKTDFSATDGVIDQLFAALTLLTQYVKQI >gi|256541434|gb|ACPV01000040.1| GENE 7 3199 - 3807 407 202 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01156 NR:ns ## KEGG: LCRIS_01156 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 202 1 202 202 382 99.0 1e-105 MHFDIFNRKTVSTDKMFFQTTLNPKQAIIIGNGAKFRRWVFFSTNFATFYVIILSAISIL LIKSNVSVLICLLLALANLVINRSIPRYWQTFFGPNAEYGKNHRPAILPILYIITLFGWL WSVSHFVGSLTFITGTFVLVGLAGSLLSLWIWMNLNTVSCAPISELQWRNNAKRRGMSDE DIDKVIASLKKRRAIYFSKHDK >gi|256541434|gb|ACPV01000040.1| GENE 8 3905 - 4261 412 118 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01157 NR:ns ## KEGG: LCRIS_01157 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 118 1 118 118 221 100.0 4e-57 MSVDIYNEKLEPYDDGKRHKFSGTFDRLNDRLAIFKDLRIAGAGGNPIVKQLALHYLKTF KDLDLKRGDVVEFEGMVEKDSNNGFTIERPTQAEKIRSAAADDAKVDVVGDDWNWFEN >gi|256541434|gb|ACPV01000040.1| GENE 9 4391 - 4624 183 77 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01158 NR:ns ## KEGG: LCRIS_01158 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 77 1 77 77 117 98.0 2e-25 MSIYYQFGIIIGLVLLAFAIHIAMKQHKTTFPFNIVNLGIAFIISTLAIYIIVACLGAIQ PQNWYTNNALWKFLIAS Prediction of potential genes in microbial genomes Time: Wed May 25 05:17:36 2011 Seq name: gi|256541433|gb|ACPV01000041.1| Lactobacillus crispatus 125-2-CHN cont1.41, whole genome shotgun sequence Length of sequence - 898 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 98 - 157 3.7 1 1 Tu 1 . + CDS 190 - 831 249 ## PROTEIN SUPPORTED gi|165937309|ref|ZP_02225873.1| non-canonical purine NTP pyrophosphatase RdgB Predicted protein(s) >gi|256541433|gb|ACPV01000041.1| GENE 1 190 - 831 249 213 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|165937309|ref|ZP_02225873.1| non-canonical purine NTP pyrophosphatase RdgB [Yersinia pestis biovar Orientalis str. IP275] # 1 200 27 222 223 100 31 4e-22 MDSLLFTTYDQNKINELQDKLNQLSLPIKVVGLAEVDGLAEVDYAPQKSYSEATFLSNAR ATAHRLAEFTNLPTLSESSGLSVDYLLNSLGILPYHHNGQDDKAKLLGYLGGVSSEKRTA SYYTTFVFTWPGQESNDIVSAGRISGLIAKYPHGSSNYGYDALFVVPELGKTFAEMNLNE RNSISHRNNTLNKLLCDLPDWWDAQKSAQAINN Prediction of potential genes in microbial genomes Time: Wed May 25 05:17:50 2011 Seq name: gi|256541432|gb|ACPV01000042.1| Lactobacillus crispatus 125-2-CHN cont1.42, whole genome shotgun sequence Length of sequence - 49781 bp Number of predicted genes - 46, with homology - 46 Number of transcription units - 16, operones - 12 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 4 - 58 9.3 1 1 Op 1 . - CDS 81 - 518 542 ## LCRIS_01160 hypothetical protein 2 1 Op 2 . - CDS 568 - 1800 999 ## COG1409 Predicted phosphohydrolases 3 1 Op 3 . - CDS 1804 - 2928 1096 ## COG0116 Predicted N6-adenine-specific DNA methylase - Prom 2958 - 3017 3.7 4 2 Op 1 . - CDS 3389 - 3799 438 ## LCRIS_01163 cell division initiation protein - Prom 3823 - 3882 6.2 5 2 Op 2 . - CDS 3893 - 4462 479 ## COG4474 Uncharacterized protein conserved in bacteria - Prom 4504 - 4563 5.0 + Prom 4440 - 4499 3.4 6 3 Op 1 7/0.000 + CDS 4532 - 5161 521 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase 7 3 Op 2 . + CDS 5164 - 7476 1892 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Term 7501 - 7535 2.1 - Term 7601 - 7629 -0.1 8 4 Op 1 6/0.000 - CDS 7631 - 8260 816 ## COG0177 Predicted EndoIII-related endonuclease 9 4 Op 2 4/0.000 - CDS 8263 - 8907 425 ## COG3935 Putative primosome component and related proteins - Term 8920 - 8954 3.0 10 4 Op 3 . - CDS 8986 - 10284 1534 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases 11 4 Op 4 . - CDS 10338 - 10835 492 ## LCRIS_01170 hypothetical protein 12 4 Op 5 . - CDS 10838 - 13618 2226 ## COG1199 Rad3-related DNA helicases 13 4 Op 6 8/0.000 - CDS 13634 - 17242 2812 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 14 4 Op 7 . - CDS 17245 - 20724 2774 ## COG3857 ATP-dependent nuclease, subunit B - Prom 20745 - 20804 8.5 + Prom 20704 - 20763 7.2 15 5 Op 1 5/0.000 + CDS 20803 - 21711 924 ## COG1577 Mevalonate kinase 16 5 Op 2 5/0.000 + CDS 21711 - 22673 713 ## COG3407 Mevalonate pyrophosphate decarboxylase 17 5 Op 3 3/0.200 + CDS 22716 - 23798 871 ## COG1577 Mevalonate kinase 18 5 Op 4 . + CDS 23810 - 24826 811 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases + Term 24828 - 24875 12.5 - Term 24816 - 24863 12.5 19 6 Op 1 . - CDS 24879 - 25670 917 ## COG0561 Predicted hydrolases of the HAD superfamily 20 6 Op 2 . - CDS 25667 - 27040 1057 ## COG0144 tRNA and rRNA cytosine-C5-methylases 21 6 Op 3 . - CDS 27021 - 27935 652 ## LCRIS_01182 hypothetical protein 22 6 Op 4 . - CDS 27988 - 28740 542 ## LCRIS_01183 SAM-dependent methyltransferase - Prom 28876 - 28935 5.8 + Prom 28691 - 28750 5.1 23 7 Op 1 . + CDS 28823 - 29386 668 ## COG0681 Signal peptidase I 24 7 Op 2 . + CDS 29458 - 29646 310 ## LCRIS_01185 hypothetical protein + Term 29652 - 29714 14.9 - Term 29647 - 29692 8.2 25 8 Op 1 . - CDS 29707 - 30495 546 ## LCRIS_01186 hypothetical protein 26 8 Op 2 . - CDS 30546 - 31355 736 ## LCRIS_01187 hypothetical protein 27 8 Op 3 . - CDS 31365 - 32195 585 ## LCRIS_01188 hypothetical protein 28 8 Op 4 8/0.000 - CDS 32195 - 32917 196 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 29 8 Op 5 . - CDS 32895 - 33269 394 ## COG1725 Predicted transcriptional regulators - Prom 33425 - 33484 14.2 - Term 33393 - 33445 5.3 30 9 Op 1 . - CDS 33576 - 34817 1516 ## COG2195 Di- and tripeptidases 31 9 Op 2 9/0.000 - CDS 34836 - 35633 811 ## COG0327 Uncharacterized conserved protein 32 9 Op 3 . - CDS 35630 - 36313 765 ## COG2384 Predicted SAM-dependent methyltransferase + Prom 36334 - 36393 5.3 33 10 Op 1 . + CDS 36414 - 36854 410 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 34 10 Op 2 . + CDS 36854 - 37528 647 ## LCRIS_01195 enterolysin A + Term 37533 - 37565 4.2 - Term 37521 - 37553 4.2 35 11 Op 1 31/0.000 - CDS 37575 - 38687 1220 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 36 11 Op 2 . - CDS 38703 - 40523 1540 ## COG0358 DNA primase (bacterial type) 37 11 Op 3 19/0.000 - CDS 40553 - 42616 2588 ## COG0751 Glycyl-tRNA synthetase, beta subunit 38 11 Op 4 3/0.200 - CDS 42609 - 43526 1011 ## COG0752 Glycyl-tRNA synthetase, alpha subunit - Prom 43547 - 43606 3.6 - Term 43553 - 43586 4.0 39 12 Tu 1 . - CDS 43786 - 44541 538 ## COG1381 Recombinational DNA repair protein (RecF pathway) - Term 44860 - 44890 -0.9 40 13 Op 1 2/0.200 - CDS 44911 - 45813 973 ## COG1159 GTPase 41 13 Op 2 17/0.000 - CDS 45813 - 46337 584 ## COG0319 Predicted metal-dependent hydrolase 42 13 Op 3 1/0.200 - CDS 46340 - 47299 740 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 43 13 Op 4 . - CDS 47325 - 47768 475 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 - Prom 47796 - 47855 7.8 - Term 47878 - 47917 5.2 44 14 Tu 1 . - CDS 47929 - 48105 292 ## PROTEIN SUPPORTED gi|58337487|ref|YP_194072.1| 30S ribosomal protein S21 - Prom 48304 - 48363 8.7 + Prom 48239 - 48298 7.3 45 15 Tu 1 . + CDS 48333 - 49169 968 ## COG1806 Uncharacterized protein conserved in bacteria + Term 49202 - 49240 7.0 46 16 Tu 1 . - CDS 49535 - 49780 133 ## gi|262046503|ref|ZP_06019465.1| hypothetical protein HMPREF0508_00809 Predicted protein(s) >gi|256541432|gb|ACPV01000042.1| GENE 1 81 - 518 542 145 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01160 NR:ns ## KEGG: LCRIS_01160 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 145 1 145 145 278 100.0 3e-74 MLKDETKFDQLGQKLFMKGVLQDFEKKNGPIKGRMMVTEGKIPPEMLTKLQSELMNSSNW IVVEGSFDFYNYTVGMIVDLTTGKPLANGWLVPQLGHPGMQPAEKWQEFLIEKVVDAIDE KGKINLPLYVWISDRSDLTKTDQDL >gi|256541432|gb|ACPV01000042.1| GENE 2 568 - 1800 999 410 aa, chain - ## HITS:1 COG:lin2791 KEGG:ns NR:ns ## COG: lin2791 COG1409 # Protein_GI_number: 16801852 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Listeria innocua # 2 360 34 402 443 159 29.0 7e-39 MITKELNTEFWVISDTHLIADSLHDEGQAFSRMQKTSQGKDLYYQEIALSAFMRMAQRKK PAAIIVTGDVTFNGERVSAEKFAQIFKPLKETKVLVLPGNHDIFDGWAREFRGKKQFYAG EISPMFWRSIFDKSYREALDEDDNSLAYSVQLNPQYLLVLADSNIYGKEETTEAPHTHGE IGKVQLKWIEKQFRYAQEHQLRPVLFMHHNLYAHNPAVNKGYVVDDAVELRRLCARYNVK LAFSGHIHAQNIMGPQDMTPTTEIVTSSFCSNDQGYGVVRVHSRHITYVRRNFDMTRYLT DEEKENYTLVHYHKYLKDLQLGSISADMMQSELNQYHEDIELVRAMGNLFGWMNYHFFNG HNHIKASELNKIHASKEYQVLIKHHPEYRLYLKTLYDTSDHSNLQVKIRY >gi|256541432|gb|ACPV01000042.1| GENE 3 1804 - 2928 1096 374 aa, chain - ## HITS:1 COG:SP0373 KEGG:ns NR:ns ## COG: SP0373 COG0116 # Protein_GI_number: 15900296 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Streptococcus pneumoniae TIGR4 # 2 373 3 378 385 374 49.0 1e-103 MKEYQLYATMGAGFESVVNKELQSMGYKTRVENGRVFFKGGQEDIVRTNLWLRTADRIKI LLKEFRATDFDTLFNEIYDFDWAELLPVDAKFPVQGRAVKSKLHSEPDVQSIVKKAIVNK MVDQYHRRGFLPETGNEYPLDIHIYKNVARISLDTTGASLFKRGYRVEHGGAPMKENFAA GLLKLTPYNGTHPLIDPMTGSGTLAIEAALIAKNIAPGTWRKFAFDGFDWFNPKLHNEVL AKAKSEVKPLEAPIWASDIDQSVLEVAKLNAHNAGVLQDIRFKQIAVKDFTTDLENGIII ANPPYGKRLKDRESAEELYRQMGEVLRPLSSFSQYYLTADPNFEKCFGAKATKKRKLFNG NLRVDFYQYWANRR >gi|256541432|gb|ACPV01000042.1| GENE 4 3389 - 3799 438 136 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01163 NR:ns ## KEGG: LCRIS_01163 # Name: not_defined # Def: cell division initiation protein # Organism: L.crispatus # Pathway: not_defined # 1 136 1 136 136 229 100.0 3e-59 MANLNDIKLSGQDILKKQFKSKVKGYDPDEVDAYLDEVISDYTTFQQIIEDLYGQIGTLQ RQLMDEKQKAKKTVEAEEEKVKTYMPTHRRSAPVKFAEDADDTQGEISTNMAIIQRISTL ERKVYNLEQHVYGLKH >gi|256541432|gb|ACPV01000042.1| GENE 5 3893 - 4462 479 189 aa, chain - ## HITS:1 COG:lin2003 KEGG:ns NR:ns ## COG: lin2003 COG4474 # Protein_GI_number: 16801069 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 180 1 179 181 125 35.0 4e-29 MQRLWVTGYRSYELNVFGDRDPKITVIKYALKNYLTSLLDDGQLDWIITGANLGVEQWTA EVGLELGEKYPVRTSIMIPYEEFANRWNDSNKAKFLNLKEKVDFFASTSNTPYQSPLQLR NYQNFMIQHTDRALMIYDSEHPGKPKYDYNLIQKYQETKEYPLDLIDFYDLQDAAEEYQE NHQINHFSE >gi|256541432|gb|ACPV01000042.1| GENE 6 4532 - 5161 521 209 aa, chain + ## HITS:1 COG:BH1703 KEGG:ns NR:ns ## COG: BH1703 COG3331 # Protein_GI_number: 15614266 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Bacillus halodurans # 27 202 18 195 199 192 55.0 5e-49 MVKYPSGSLAAFRKPVTKKDEHPVHRSYHHKKGVNFSDRGMTLEQQINESNKYYLMEEIA VVHKKPTPIQIVKVDYPKRSKAVIREAYFRQASTTDYNGVYKGYYLDFEAKETRNKTNFP LKNFHEHQIFHLDECLKQQGICFTIIRFASLERYFVTPASFVIRAWRKKDKSSMTLKEIE NNSFEIKSGFRPTLPYLKAVDKFIADRKR >gi|256541432|gb|ACPV01000042.1| GENE 7 5164 - 7476 1892 770 aa, chain + ## HITS:1 COG:SP0369 KEGG:ns NR:ns ## COG: SP0369 COG0744 # Protein_GI_number: 15900292 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 28 651 7 642 719 471 43.0 1e-132 MADNNNNMKRESRRDYHGRRPSSGHLWIRIIKWIFLLIFLIVISGIGLFAFYAKDAPNIS QDQLQSGKSSSLYTNNGKFLLSLGSEKRIYVKNKDIPQQLKDAVVSVEDKRFYKDKLGVD PIRIIGSMLTNAKSNSIAAGGSTITQQLVKLTVFSTAASQRTLKRKAQEAWLAMKVQHEF SKDQILEFYINKVFMNYGNYGMGTASNYYYGKPLSKLDLAQTALIAGMPNAPVAYDPYLY PQKAKYRRDIVLKTMLQNDKITKAEYNQAVAEPISKGLKSHRNNNESKIRKIDDPYIKEV ISEVKSKGFDPYHDNLKITINIDQKAQNKLYELANNGSVPFTNNKMQIGATVVDPNNGHV VAILGGRHLPSVQLGLDRAVQTGRSTGSSIKPVLDYAPAIQYLNWSTAKMIDDSKYVYPG TNIQLYDWDNKYDGMMTMRHALEQSRNVPAIKTLAEVGVKRASAFARRMGVNVSPKSGLS VAIGANASSLQMTGAYSAFATMGVYHKPQFVSKIETPDGLTRNYDSNGVRVMKKSTAYMI TDMLKGVIKRGSGTNAKIADLYQAGKTGTVKYSDEDLAKYPSYNSTPKDSWFVGYTRSYV MGVWTGYDNLKDGTISGIGQQSAQLMYKSMMTYLMNNKPNLDWKQPSSVVRAKIVNNSNP PELATGGGTWQLFVRGHTPAGIGNSAASYDEDDEETDTSSDNTGTTPSSSRTAVTQSSSS RENGSSSQSNSSQRASSSQRRTQSSSTQQSSSTRKPEEESHERNDDSDND >gi|256541432|gb|ACPV01000042.1| GENE 8 7631 - 8260 816 209 aa, chain - ## HITS:1 COG:SP1279 KEGG:ns NR:ns ## COG: SP1279 COG0177 # Protein_GI_number: 15901139 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Streptococcus pneumoniae TIGR4 # 5 205 2 203 209 192 50.0 5e-49 MTEDLLSDEEARRVLKKILALYPDAQGELQWDTNFHLLCAVMLSAQTTDKMVNRVMPSFS KMFPTPEVLAKAPIEEIEHEIKTIGLFRSKAKHLKATAQILVDKYNGQVPKDKKLLMTLP GVGEKTANVVLAEGYGVPAIAVDTHVSRISKKFHIVDDKATPHEVEKRLEAILPKSEWIK THHAMILFGRYTMPARAKGDPYSYLNSEK >gi|256541432|gb|ACPV01000042.1| GENE 9 8263 - 8907 425 214 aa, chain - ## HITS:1 COG:BH1697 KEGG:ns NR:ns ## COG: BH1697 COG3935 # Protein_GI_number: 15614260 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Bacillus halodurans # 18 214 21 207 233 111 29.0 1e-24 MEFNDYRALGFTTLQNGLIAYYPQLGISDAELILIIQLEAFSQRGESFPSNEKIAANTNL SVSDVGNLIQRLIERNYLTIEQMTDSQDKIGNKYSLNKLYNALDHYIDQNVLIKDKKKDK TVSVANNLENNPLNYLSRKVEVEFGRYLSPIEREEIAQWLSVDHYAPELIELALREAVLS QAYSLKYIDRVLLNWQRHSLKTTDEVERFLKRNR >gi|256541432|gb|ACPV01000042.1| GENE 10 8986 - 10284 1534 432 aa, chain - ## HITS:1 COG:SA1287 KEGG:ns NR:ns ## COG: SA1287 COG0017 # Protein_GI_number: 15927035 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Staphylococcus aureus N315 # 6 432 4 430 430 535 59.0 1e-152 MTELISIKDSSKHVDEEVKMHVWLTDKRSSGKIIFLQLRDGTAFFQGVVRKNDVSEEVFD AAKSLRQEASFYITGTVHEDARSHFGYEIQITDLKVVSNNEGYPIGNKEHGVDFLLDHRH LWLRSKKPFAIMQIRNTMFKATVDFFEKEGFIKFDAPIFMHSAPEGTTQLFHVEYFDHDA YLSQSGQLYGEAGAMAYGKIFTFGPTFRAEESKGRRHMTEFWMMEPEMAWMHQDESLDIQ ERYLAYMVKQVLENNEYELKILGRDPEKLRPTTEGNFVRLPYDDAIKMLQDAGRDIKWGD DFGAPDEGYISEQYDRPVFIVNYPTSIKPFYMKKNPDNPKEYLCADVIAPEGYGEIFGGS EREGNYEILKQQILDAGLNLEDYQWYLDLRKFGGVPHSGFGMGFERTIAWVCHLDHIREA IPFPRLINRMQP >gi|256541432|gb|ACPV01000042.1| GENE 11 10338 - 10835 492 165 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01170 NR:ns ## KEGG: LCRIS_01170 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 165 1 165 165 300 99.0 9e-81 MLQDDTRQTIKFVSWVIGLIIVAFLASIAIFYYAGSRSRGNDQKVTQLATSKTPIRKIQN YYHLDRGTSSYAIAGTNNKGKQYYFIYLPNSKKAYLYPAAKGITESKIKNKFKSIHTDAT INNINLGWYKGEVVWEVAYKKQNGNLGYTLYEFKNGNDISEVDNL >gi|256541432|gb|ACPV01000042.1| GENE 12 10838 - 13618 2226 926 aa, chain - ## HITS:1 COG:BH1691_2 KEGG:ns NR:ns ## COG: BH1691_2 COG1199 # Protein_GI_number: 15614254 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Bacillus halodurans # 259 919 38 708 716 226 28.0 2e-58 MAKSFTKDTFAVVDLETTGTQRENGHHIIQFGCAIIKNLKVVKTYSFLINPHREIPQSVV NLTGIHDQDVAKQRDFDYYAPKITKILQNTVFVAHNVDFDLPFLNYELVQHGYEALTNKA IDTVELAKIAFPTFPSYKLSDLTTQLGIKHLDPHKADSDAYGTAVLLLEIFNKLESLPQA TLNTLSSLSHGLIRDTSWVITTIADNLRQEKRPLGKEYMQVRNIILQKQNDNSEAHGGNA KFPKTDSEKQKLFKDHLHFRRAQVDLINHLHQFINDPDKRAMLIEAPNGTGKTFSYLFAY AYQLYSGRKLVVATPTKVLQEQVIEHEIPQLFKVIKLDLTAEVVKSSSRYLDLDGFVQTI FQGTPNKQTLILQMQILVWLTKTKTGDLDELNLTNYNAPLFAQIQHPGDARVGSRFAGVD FWNLARKRQEEADILVTNHAYLANHYMDTIWGQNPYLVIDEAHRFTDNVVSSRNDSLRFE ALWGVLSHLRNLLYFSDESVEAQFNDDVQLNLLLKKIDPKILELIQLINELQKQLYFQRD NAVNRTVLANGNLELSFQGKSLFGGNSKFKAILPKFQQKLEEVRDLTNQVLFELYNEQER MLANVEVLVNEITEQIDRLDYYSEKGYQLADLLSDQKGLEQDGFILMITNLDDPLSTNLD WLMLDAGEVLKQIYSRFDHIAFVSATLTSNRNFEYAINQLALTELHPVEYIGKSTFNIKK HLQVLAVNNMPSPDSEEFEKTIAQILLSDIQDKHHVLVLMTNLEKIKTVFTMIMNEPQLK DFEILAQGLSGSNNRIAKRFVIAKKSIIIGADSFWEGIDFHDCGIDTVFASKIPFESPDQ PEVRLRQKKLEDQGIDSFTKDSLPRAVIRFRQGMGRLIRGEQDHGQFVILDPRLWTKDYG QEFLQTIPVKVEKVTREELKKKLENK >gi|256541432|gb|ACPV01000042.1| GENE 13 13634 - 17242 2812 1202 aa, chain - ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 2 1195 9 1226 1232 572 31.0 1e-162 MSQFTKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLREILSGTQVDELLVITFTKAAA EEMKTRIKQALSAELAKPGSNRRYLREQLNQVDTANISTIDAFCLEVIHRFYYSVNLDPS FSILTDDTQAALLKERALREIEGEFLEKKDVNFRHFYDNFAGDRDADSPRDLLLDLYDFA MAKPEYRSWLKKLVDVYVVNGSIVESDLWQKQIKPYLLTSIGDLQGKINDYLENPVIETK ELAKAKEAFTLFAQNLDHFVFALENDADYDKQRKLLRSCVFTANYRKSSKWDEDVLNFYE DLQKLKDEAKNLVFDTFTSFFAVDEQEQIKVMQRGQKIVAAIAKSELALIDRFNKLKRSE NLLDYSDMEQLAYQILSQDTSNSQMAREFYQNKFKEILIDEYQDINALQENIIQQIKNKD KNTLFMVGDVKQSIYGFRQAEPSLFLKKYHDFANDDNKQTKRILLSDNFRSTEPVTKIVN QVFKSVLSSDFGGIDYQKEGQLIFGAKYYPENTPKASEVIVHEKKNSSNEDENEIDFSEI QMVLARIKQLKEERVQIFDSKTGMRELRYSDIAILTRSRSDNLEIMQEFAKQDIPLFVTD AKNYFQTFELTVMMNYLKIIDNPDQDIPLVSVLRSPLFNFGEKDLAKIRIKSKNSTFYSA LTSYVGVGDELSTRIKDFLNQLADLRKFATAHRISELIWSIYARTNLLEIMTALPNGEQR RVNLEALYERAASYESAGFKGLYQFINFINRMRQSQKDLAQPLLTKEAGNAVRLMTIHGS KGLEFPIVFYVGMQHKYQMRDLKGNYVISSDSIGITLREEHYRIDSLVKAMGNVTKKRQL LEEEARILYVALTRAKQKLILVGDVPNLDKRVKEWSTELNQIGQLSLADKLSSTSPLSFM GPALALDRHLAVKMSDITNSLDKSQSFLYINYENANGELPDYQKAETSNDKTQSNLLNQT TKRLYQFNYPFKDASETTAYQAVSEIKKAFNDPIETELENAHLLTSTNRYLQPIDTKPNF LYQTKFTGAEIGTATHMILQYYDYQGNGAEDQLEVEIQELIKQKKLNPEIVSSLKKDQIE WFVHSNFAEEFWQKPENLKREIDFSSLISAKTLFKNFSDPNAKILVHGTIDGYFVKNDGI ILFDYKTDHVDQSHLSESIELIKEKYTGQLRLYEQAINEFSQKKVIGKYLILLDAKQAVE VK >gi|256541432|gb|ACPV01000042.1| GENE 14 17245 - 20724 2774 1159 aa, chain - ## HITS:1 COG:lin2369 KEGG:ns NR:ns ## COG: lin2369 COG3857 # Protein_GI_number: 16801432 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Listeria innocua # 2 1158 3 1157 1157 296 24.0 2e-79 MIKILTGRQTDPLQEKILEEAVENYQQHPEQETFIIVPNHIKFTTEVRAINKLATSKQQT ETAVKNLHVLSFSRLAWFFLKDAEQGLPNQLDDAASAMLLAHIIENKKDELTILENVNVN SGLVNQLYQTILQVYDGNLDLDEISEDNLDQETKNKLHDLRIIYDAFIKEIAGKFSTKNE VQLQLNEILAKSKNLKQASFYFCDFSHFSLQETLTIKILMRKAKDVILAFKTRLGEINSS AEEGDYDYVIQQTIKRLTLFLQERKMDYVTATFPLNSQSNGREILNSLWTETIPKVDELK QVQLVKADSRYAEAYFVARTIYQQVALSNYRYHDFLILAPNLKEYETYLTPILRQNQIPF FNDLQQEMKYHPLVVLIESLFNLHENPFQTQNMLAILKTHLLIPSWYKEEAEYIHDVDEL ENFVLAHGINHNLWKKHFDNFVNAEVIRLDKMDDEVAKIDRLRSYLVDKISTFFKIIEQE KDSQKALTIFFEFLTKNGIADRLEKWRDEANEAGDLQQAQQPEQLWDLLMQLLQDYLAIN PETFDLNEFFNMLISAFREANFSQIPSTLDAVNLSEMGMVQTSGYKQVFIIGATANNLPQ IQKMPGFLTTENLNQLQNSFNSESYLEDSQQLNNLDQNYQFGLSLALAQDRVYVSYPVLN ASNEELDPSIYYQRLKDYGAQQFVQHDLPEKMQDLLSFITNPDASLGYLTYMNSINSGLA VQELLKITQEQLPQKTKTVLEASDFDNQPENIGQDLASQLYGQNLNSSVSQLETFYENSY EYFLNYGLKLRRRFENEFDVIQAGNYFHETFDRLVKKLNKQHTDLADLSSIELEQMLNSV RNVMKDEGKYSQLMNDPFNQYLFKCLDHTTSKVAHNWRRSLKETPLRAKYSELSFGLGEK IKGLSLKVPDISGQHKVDLRGKMDRVDLANFNDKDQVLAQVIDYKSSAKKFDLGMFYNGI ALQMVSYLDVLTKNDQFFAGKDRLSLLGAFYQTVTRQLERLNSNKLIDSSLNLKKGATDS KPKLMYTGLISNDPEILVEAEPLLDDHPSYSSELYTGVKTKARGGFSLPRDRNFSEEEIE LLLEYDEYLIRQASSQILSGKIELNPYRYGKAKNALTYSDYRDVFFFDAMLRQNQYHEIN NLNKKELILKIKEKLGKEQ >gi|256541432|gb|ACPV01000042.1| GENE 15 20803 - 21711 924 302 aa, chain + ## HITS:1 COG:L7866 KEGG:ns NR:ns ## COG: L7866 COG1577 # Protein_GI_number: 15672386 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Lactococcus lactis # 6 299 10 307 310 160 32.0 2e-39 MKSSYLAHGKVIIIGEHSVVYGYDALAMPIKALHIKTTVESASQMWMDTARYHGPLFEAP AEYDGLKYVVKHMQKKAGNNHPLKITYTGEIPMEHGFGSSATVALGTTRAMNQFFQLNMT EKEIMTVTNHAEMINHGKASGLDAATVNSDYLVFFNKKMGPKILQTKLGATLLIMDTGQL GNTKEAVFLVKKMLEKSDYAKKKIARLGELADLTKKAWIKHDRQAVGQIFNEAQEILHSF DLSTNKIDQLQKIALSNNALGFKLSGGGLGGITISLCDNETVAQEIASKCKDLISDYWIE EI >gi|256541432|gb|ACPV01000042.1| GENE 16 21711 - 22673 713 320 aa, chain + ## HITS:1 COG:SA0548 KEGG:ns NR:ns ## COG: SA0548 COG3407 # Protein_GI_number: 15926269 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Staphylococcus aureus N315 # 5 310 7 316 327 233 44.0 3e-61 MNRTARAHTNIALIKYWGKADDKLRLPLMSSLSMTLDAFYTDTSVEKTDGENQFFLNNQQ QTAAASQRVFAYLKKLQARFHVTGNLIVKSVNHVPTSAGLASSSSAFAALTAAFCQCYDI NIDLEDLSRLARIGSGSASRSVYGGFAVWQKGNSDETSYAYALDETPTMDLHLLAVELNT KQKKISSTYGMKDAQSSPFFRPWLERNNSELNEMIKAIKSNDFTALGQLAELNANEMHAI NLTAQPEFTYFEPQTIQAIKLVEQLRTEGIECYYTIDAGPNIKVLCQLRNSKDIIQRFSS EFNNVNIVNASFGPGITYLD >gi|256541432|gb|ACPV01000042.1| GENE 17 22716 - 23798 871 360 aa, chain + ## HITS:1 COG:SA0549 KEGG:ns NR:ns ## COG: SA0549 COG1577 # Protein_GI_number: 15926270 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 1 355 1 356 358 294 41.0 1e-79 MITEKAPGKLYIAGEYAVLEQDCPAILVAVNQFVRVSITKSKGATGLIHSKQYSQDSIHW VRQGSKMVIDNRDNPFEYILSAISFTEQYCIEQNIKMKVYDLHVNSDLDSADGKKYGLGS SAAVTVATVKAILRFYGVKMSNELVYKLSAISHYSVQGNGSAGDIAASVYGGWLAYQTFD KKWLKQELANKTLVQVVNEAWPGLKVELLTPPKDMKLMIGWSQKPASTSRLVDETNANKA ALNMEYKNFLAASRACVLKMVQGFEANNIALIKQQIRANRKLLQHFAKINQIAIEIPRLS QLIKIAENFGGAAKTSGAGNGDCGIVITDANTDVEALESEWRHNGIMPLNFKVHQIIMAH >gi|256541432|gb|ACPV01000042.1| GENE 18 23810 - 24826 811 338 aa, chain + ## HITS:1 COG:SA2136 KEGG:ns NR:ns ## COG: SA2136 COG1304 # Protein_GI_number: 15927926 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Staphylococcus aureus N315 # 4 336 6 341 349 221 35.0 1e-57 MSIRSERKEEHLKLAQMFFNKEKYNSFDQLHLLRPALPETKVDPTILGSEMFGKNVSAPF FINAMTGGSAASKQINQALGQVAQQQNIALALGSASILAKETDQLDSFMVARAEDPDGVL IVNVNPETPISAIKQIIQELNADALQIHLNTIQEIAMPEGDRDFRWLDSIKAIRTAIDLP IIIKEVGFGLDQTSIHLLKVNGIEYFDVAGSGGTNFAQIENARNASDVSYLEDLGLPTVV TALMAWQEQVKFYVSGGVRNPLDILKGLALGGKFVGISNVFLQEYIQNGSTGLEQLITNW KNELAALIAVYGKKDLASLVQIKKYYNLPLKAQIDQLL >gi|256541432|gb|ACPV01000042.1| GENE 19 24879 - 25670 917 263 aa, chain - ## HITS:1 COG:STM0867 KEGG:ns NR:ns ## COG: STM0867 COG0561 # Protein_GI_number: 16764229 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Salmonella typhimurium LT2 # 2 260 3 263 271 162 37.0 8e-40 MIKLIATDMDGTWLTDQKDYDKELFLREFAEMQKQGIKFVVASGNQYANLMTRFPEVLDK IYFVAENGALVAQGRQILHVDSLSDDIYQTLLKITTEYPYPAVVMGLVSAYVKKSSGRAY KQEMKKYMEHITVVDSFGEIDDQIFKVSLTVPEDKMSKILRELKEKYPEVGFVSGAADSI DMQTKGMNKAVGLAYLSQKLGIKSSEMIAFGDSGNDVGMLKYVGRSFATATALPEAKQAA GQIIGSSNESAVQKEIAKLLEIK >gi|256541432|gb|ACPV01000042.1| GENE 20 25667 - 27040 1057 457 aa, chain - ## HITS:1 COG:SP1402_1 KEGG:ns NR:ns ## COG: SP1402_1 COG0144 # Protein_GI_number: 15901256 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pneumoniae TIGR4 # 2 293 1 280 280 280 49.0 3e-75 MLNLPNEFKTKYEKLLGTKKAQELFAAMNEESKKAFRINTLKPTKVSYELTDSVPQINSA YYGEVSGEDPEWVSGSVYSQDPAAMFPAAISGVRPGERVLDLCAAPGGKTTALGEQLKGE GLLVANEISATRVKALRENIERWGISNALITNESPEKLVPIFSEFFDVILVDAPCSGEGM FRKNPEAIDYWSQDYVLTCQNRQKEILNEAVKMLQPGGRLIYSTCTFAPEEDEQIVSWLN KEYGFTILDTGIQTNKIDVGQPEWADGNPDLTKTLRFWPQDGIGEGQFVAVLQKVGKARI EKKSKNKKAKRDPWRLTKNDQELVGQVMDQFNLPVALSDWRNKAKVRNEHVYIPAISLPE KSKLHVINNGVELGILKKKRFEPGHQLAEVLGKVKQERVYDLPTIEEYQNYLHGETVKVD SDLRGFVLVSYQKLIFSFGKIAGNQVLKNFYPKGLRK >gi|256541432|gb|ACPV01000042.1| GENE 21 27021 - 27935 652 304 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01182 NR:ns ## KEGG: LCRIS_01182 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 304 1 304 304 600 99.0 1e-170 MLSNIESNYADELLEAHGLTNNTRYFRTDSDDKISTFLKYLDKNYANHQIQLHLDNNYEK KQVLVWANHAVTGLPTESGRYFSPDDFKGQVSFVVLGPTVKLNLLDVQNNKYVILGKNYY SVIGEFKDYPQVEMDKYYLSTGIDQPTAKDQLKNYRIVVDATPAVIEKIAKHYHASLHIP SFVQEHHRDRLSVVPDILMLVVCLLVGMITNMLLAIGIKRQARLTRLHDDLLRNWVINRS VRLFLIEAIFALATYFFLRWHAFYSTYGSLIVTLIASWVVIVLAFCGMVYYLVRKDRKIA KSTK >gi|256541432|gb|ACPV01000042.1| GENE 22 27988 - 28740 542 250 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01183 NR:ns ## KEGG: LCRIS_01183 # Name: not_defined # Def: SAM-dependent methyltransferase # Organism: L.crispatus # Pathway: not_defined # 1 250 1 250 250 487 99.0 1e-136 MTKFLTKLTKLEQEINHTAVKRQVEEIALIDSYVQAGKPLKRAPRRLGLLPDEFEEVLVE VGPDKEGALRDLNNLLNNFRQYLSLIYGIWSLPNIQTAQLIKNKLHVQTALEIMAGNAYW SQALTQVGIKVHSTDSLEWAKTSTTGAKPFYPVEDLPADQAIKKYHTVNLVLCSWSPNFG HGDLETVAAWHKYNPSCHLLFVGEKDGATNSPEFWHQNWFKNSAALDEINHSLQSFDFIN EQVFEIKNEF >gi|256541432|gb|ACPV01000042.1| GENE 23 28823 - 29386 668 187 aa, chain + ## HITS:1 COG:SA0826 KEGG:ns NR:ns ## COG: SA0826 COG0681 # Protein_GI_number: 15926554 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Staphylococcus aureus N315 # 17 185 5 181 191 124 39.0 9e-29 MVETKKRNDDESIGRFVLDIIIMFAILMGIYYFIFSFFLSNETVSGPSMQPTFENGDRLI AVRHFTPKRNDIVILKAPDQKGALYIKRIIGTPGDMVTSKNDKLYINGKQIAEPYLNNGY QRKSHKLGELYTNNFTLKKRVPKDSYFVMGDHRDVSKDSRYFGFVKRSALVGRVVFRYWP FTQWKTF >gi|256541432|gb|ACPV01000042.1| GENE 24 29458 - 29646 310 62 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01185 NR:ns ## KEGG: LCRIS_01185 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 62 1 62 62 96 98.0 2e-19 MNEQEELSDAIINFQVKHHVNDTDLAFASHLSVEKVHAMKVGDGQFTAEEVNQLYDYMSA NA >gi|256541432|gb|ACPV01000042.1| GENE 25 29707 - 30495 546 262 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01186 NR:ns ## KEGG: LCRIS_01186 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 262 11 272 272 446 99.0 1e-124 MWTQKRKFIYLVFLINIFAVVFLSGYFLLFKNWNGLANLPSKNLGQFWRNNFVYVTLYID FAFCAITCWQNEKINLSQTWHLAASDERKTYLANIFSSLLACGYFFLLQEIVNSLLLIPS CGADSFAQAFREFGLYPIKTVPGVEITSNRMLAFHWLFIILIILIIYFFVSFANFSSRVI TDFLPFKSTVWARLLIIAILVIVAAYCGMIFMSKLQGFVDKSPNLQATDPIWLDDLCLFI VSLVFGILNLVFVKKYLEPKID >gi|256541432|gb|ACPV01000042.1| GENE 26 30546 - 31355 736 269 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01187 NR:ns ## KEGG: LCRIS_01187 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 269 1 269 269 431 99.0 1e-119 MANFKTLFKQMFVQKRRYANLVLLLQVFAVLFLLVMALLDKSNLAYLNISKDSNWLDRLL SAGMLETPIADVIFVGLLCWQNEKINLSQTWQLAPASSVKIWLINMLSSLVECIYIFVIQ VILGFVAAMIDNLSHHYSLLHDLVDAKVTWADASLLIEFLLFLTGTVLVIMTFVSFANFL TKVIVDQLPVNNNIVIKLFVMAVIVIIAILIAEQLNEQITAMYLHRFAKEAAYDPLGISV VEYFAGAIVLGAIDSYLMSKFVEPKIINR >gi|256541432|gb|ACPV01000042.1| GENE 27 31365 - 32195 585 276 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01188 NR:ns ## KEGG: LCRIS_01188 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 276 1 276 276 427 98.0 1e-118 MTSFNTLFNRMFQEKSKSVYLIFLIQAFASLCFTIIGFVSENGTPEFVNGKDTSSVNVIV AFLAVFAVMMLITSFIADFVYWIISSIKNEKINRSQTWRLIPVTDTKFLLSNFGTAFLTY IWLGILEAVTIIVTLLPMLSDQDVRKAIGQASIHLSARDWQTMLGSLLLIIFIGYAWYAI VSLLNLASRSIIDFLPGGSSKVWTFIIRVIVIIAIIWILGHAATIIFSVLGKFSPFMVNS QDINYATTILQFLVFDVVITLIDILLLNKFVEAKQN >gi|256541432|gb|ACPV01000042.1| GENE 28 32195 - 32917 196 240 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 6 215 1 219 311 80 26 2e-14 MVGIRMNDLLAIKDVSYKKNQKQVLQDVNLNLAPGKIVALLGENGAGKTTLMRIIAGVAK NYKGEINLEGATKEAERKAKLSFTDGLTGFSDSTKIKEVVKFYATIFQDFDENEFDELRK FMKLDPEMKLSQLSRGMREKLIIALTFARKADLYLLDEPFGGIDAMARKKIINSIILWKD EKATILISDHFVNEISSLLDEVVIVKDHTVLEHKSADDIRQTHKSIEEYYESFYADEDDE >gi|256541432|gb|ACPV01000042.1| GENE 29 32895 - 33269 394 124 aa, chain - ## HITS:1 COG:BH0383 KEGG:ns NR:ns ## COG: BH0383 COG1725 # Protein_GI_number: 15612946 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 3 120 5 122 126 91 43.0 3e-19 MEFKDNIPIYLQIEQYLYRQIALGKLTAGEKIPSVRKLALELTVNVNTVQRALQQMNSQG ILYTKRGEGNFVTEDTKLLSETKQSLINNELEQFVQNMEEFGIGKNELVSTLENYLKNGG DQNE >gi|256541432|gb|ACPV01000042.1| GENE 30 33576 - 34817 1516 413 aa, chain - ## HITS:1 COG:L60596 KEGG:ns NR:ns ## COG: L60596 COG2195 # Protein_GI_number: 15673792 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Lactococcus lactis # 1 413 1 413 413 446 54.0 1e-125 MEYPNLLPRFLKYVKVNSRSDEHSDRFPSTEREENFQKNVIMKDLEELGLSDIHYNQNAG SVIAEIPSNVDYDVPVMGFLAHSDTADFNSENVKPQIHENYDGESKIQLGDSEFYLDPKV FPHLKNYKGQTIITASGDTLLGGDDKCGVSELMTFAEYLMNHPEIKHGKIRLAFTPDEEI GTGAEHFDVEDFGADFAFTVDGEAPGKLDWGTFSAAQFSLDIQGVNVHPAVAKGQMINAI QVGIDFHNQLPEHDRPEHTDGREGFFHLMNFAGTVDNAHLDYIIRDFERDGLEERKNLVK SIVKKMNDEFGTERITLKMWDQYYNMADELKKHMDIVDLARDAYKAEGLEVNEDPVRGGT DGSQLTYMGLPCPNIFAGEENMHGRYEYTVLESMWKAVDVMIKMAELNAERAK >gi|256541432|gb|ACPV01000042.1| GENE 31 34836 - 35633 811 265 aa, chain - ## HITS:1 COG:SP1609 KEGG:ns NR:ns ## COG: SP1609 COG0327 # Protein_GI_number: 15901449 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 16 264 15 265 265 182 36.0 6e-46 MTKVKDIVARLRQDFPENIASQGDPVGMQIGSMEADVTKVMTTLDVRPQVVEEAVEKGVD FIVSHHPVMFRPAQNLDFANAQNAMYGNIIKNGITVYSIHTNSDKAQDGSADWQAEELGL QDVEPFCLDDDGIAMGRKGKLPRTMTAYDFAYYVKEKMQIKMARLITANNEKPITSVGFI CGDGGKYWTRALDDHLDAFITGDVYYHVGHDMISSGLTVVDPGHYTEKLFKYKVYGRLKK WNEENNWNVGIELSEVSTNPFQDLF >gi|256541432|gb|ACPV01000042.1| GENE 32 35630 - 36313 765 227 aa, chain - ## HITS:1 COG:L84257 KEGG:ns NR:ns ## COG: L84257 COG2384 # Protein_GI_number: 15673054 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Lactococcus lactis # 1 214 6 228 230 161 42.0 9e-40 MNLRLNTLAKMVDPGSRVADIGTDHAYLPIELVKNGKIDYAIASDVAEGPLENAKNDIAA AGLTEQIETRLGSGLETVTHADQIDTVVIAGMGGKLMTDILDRAWSKDAQFKTLVLEPNI GEAGVRNWLMMHNYKIISEKLIAEAGHTYELIKASLTEEKHEMTEKEIFFGPFIVQEKNP VFYQKWEGQLAYYQRFLVNLNKARKKDEDRINEVDHDIKLIKEELEK >gi|256541432|gb|ACPV01000042.1| GENE 33 36414 - 36854 410 146 aa, chain + ## HITS:1 COG:SP0740 KEGG:ns NR:ns ## COG: SP0740 COG0494 # Protein_GI_number: 15900635 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 135 1 136 151 145 55.0 3e-35 MSRTENVTLTNMCMVKNKDQVLVLDRNDPVWPGLTFPGGHVEAHESFHDSVVREVKEETG LTISHPQLVGVKQFYDHNDERYLVFFYIAEQFSGTVKESDEGKLTWMSAKELKKQKLAYN FDHDLPVFFEQTISEHMLDGKRDELF >gi|256541432|gb|ACPV01000042.1| GENE 34 36854 - 37528 647 224 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01195 NR:ns ## KEGG: LCRIS_01195 # Name: not_defined # Def: enterolysin A # Organism: L.crispatus # Pathway: not_defined # 1 224 1 224 224 365 99.0 1e-100 MKKTESKFALLAALIAILAFASIPLWQNNLNSLRPQTHTVKKKKTAKKKKVVHLTWGYPF KKLYEKKIKFKSGQKFGETDVIRRVYPSKSYFHDGYDFGFSEVGHSSVYAVHAGTVHRVK YAPGLGLYIWIISDDGYVEVYQEGFLSITDIYVKKGQKVKLGQKIGKLTGSHIHLGVTKT DKDYIDKKHDNTPCKYYWKDNGTWLNPMKIIEDNLRAAGKDPVQ >gi|256541432|gb|ACPV01000042.1| GENE 35 37575 - 38687 1220 370 aa, chain - ## HITS:1 COG:lin1491 KEGG:ns NR:ns ## COG: lin1491 COG0568 # Protein_GI_number: 16800559 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Listeria innocua # 9 370 13 374 374 462 72.0 1e-130 MAEKETTQKLSLDKMVKQVVKDVKKDKSITEEDFTARLIKPYNLQGKAVDQLVQEFEDNG ISIVDENGDPSKLALKKQKDVEKAELKDMSAPSSVRMNDPVRMYLKEIGRVPLLTADQEI ALAKRIESGDEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYR LGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEE IGAEMNMPTNKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKE QLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS RSNQLRDFMD >gi|256541432|gb|ACPV01000042.1| GENE 36 38703 - 40523 1540 606 aa, chain - ## HITS:1 COG:lin1492 KEGG:ns NR:ns ## COG: lin1492 COG0358 # Protein_GI_number: 16800560 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Listeria innocua # 3 605 2 620 626 375 35.0 1e-103 MAGRIPEDFISEVRSNVNIVDVISQYVSLEKKGKDYIGLCPFHQEKTPSFTVNADKQFFK CFGCGKGGNVFKFLMYKDDLTFPESVERVAEFAHIAMPNGYGHNSGTKLNPLMQMHQDAV DFYHRVLLTTKAGERGMQYAQKRELDQEILDHFKIGYAPKADNVLITYLRSKGYQDDDLA QSGLFVQARDGQLYDRFRDRLMFPLDNENGRTIGFSGRRISDDKTEAKYMNSPETGIFTK SKVLFHFAEAKKAARGEGHLVLYEGYMDVIAAYKAGVKSGIASMGTSLTDDQIYLLRRIT PNIIINYDGDDPGVHAEERAARMFNKDGNFNLGIVVLPEKLDPDEYVKKYGAEKYLEEVK GALTPTDFFLKRLEQKYNLDNDREKIAYLGEAVKEIAQVRNPVEQDMYTEKLAKSSGVSI ASLKANLAKERRRNNRARNHVRNSQRNSPDYPIDVPLPGDEDVPTEQSVVKKNPSQTRLL YLFIHSTDAQKYMLEGQFHFPNQDFETLAQDWLKYAETHENPQIDGFLDFIPEQLQGIIV DAEMAQMPKDSTIQEVDALVLALKRRNIYSRLNELQAQLQDAKRKNDAQGIIAITQEIIG LKRILG >gi|256541432|gb|ACPV01000042.1| GENE 37 40553 - 42616 2588 687 aa, chain - ## HITS:1 COG:lin1495 KEGG:ns NR:ns ## COG: lin1495 COG0751 # Protein_GI_number: 16800563 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Listeria innocua # 1 687 1 688 688 621 44.0 1e-177 MAKDYLFEIGTEEMPAHVVPRSVKQLADRTRKFLKENGLKFKDIKTFSTPRRLTILVEDL AEKQDDIDEVKKGPAKKIAQDQDGNWTKAAQGFARGQGMTTDDIYFEELKGTEYAYVHVQ KEGKKASDILLGMSDIIKAMTFPTKMRWDSNDFEFVRPIHWLVSLFGSDVIPVKILDITA GRKTQGHRFLGDSVVLANADDYEDALKDQFVIADADERKDMIVRQMNELVKKNNWQVKPD RDLLEEVTYLVEYPTVFAGSFDEKYLKIPDEVLITSMKDNQRYFEVYDETGKLINHFIAV RNGNKDYLDNVISGNEKVLVARLDDAQFFYDEDRKYPLSHFVDRLKNVSFHDKIGSMAEK MQRVRMIGDYLAKRWDLPENVVKDFDRASELYKFDLVTQMVGEFAELQGVMGMHYARLAG EDEEVSVAIKEHYMPATAEGPLPETTVGSLLSIADKIDTIVTFFGAGMIPTSSNDPYALR RYAYGIVRILLNEKWSLPFNEVLPEIISMLNGVTPAKLPKSDADQEIADFIRDRVKQYLQ KNDFKYDIIDAVLASSQQDPSQILAAATVLQLHHDDEEFKPVVESLTRIDNILKKAKFKS NTAVDESLFDDNSEKELYAGVQNLQDIESLADLYQGFVQLQPVIDQYFETNMIMAKDEKV KNNRLAQLYAVNELADRLGDLSKLVIK >gi|256541432|gb|ACPV01000042.1| GENE 38 42609 - 43526 1011 305 aa, chain - ## HITS:1 COG:BS_glyQ KEGG:ns NR:ns ## COG: BS_glyQ COG0752 # Protein_GI_number: 16079581 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Bacillus subtilis # 6 293 1 288 295 455 70.0 1e-128 MADKKLNIQNMIFKLEQFWSSKGCMIMPSYDVEKGAGTMSPYTFLRAVGPEPWAACYVEP SRRPADGRYGENPNRLFQHHQFQVVIKPAPKDIQQYYLDSLKVLGIDPLEHDIRFVEDNW ANPSMGCAGVGWEVWLDGMEVSQFTYFQVVGELDVKPTMSEITYGVERLASYIQDVNSVF DLEWGNGILYRDIFKQPEYEHSKYAFEESNQEQLLQFFDIYEATAKRLLDKNLVHPAYDY ILKCSHTFNLLDARGAVSVTERAGYLSRIRNLAHEVAVKFVEEREKRGFPLLKSAEDKKA GVENG >gi|256541432|gb|ACPV01000042.1| GENE 39 43786 - 44541 538 251 aa, chain - ## HITS:1 COG:lin1497 KEGG:ns NR:ns ## COG: lin1497 COG1381 # Protein_GI_number: 16800565 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Listeria innocua # 5 247 1 242 255 159 34.0 4e-39 MARELKEVQGIIFKRQKYKEADLLAKIMTKQDGIMTLIVKGALRPKSRLSAATLNFSIGT YVIYTSEKGLSNLRTYKGARQFDGLYNDLTKNAYISFIFDLIDHAFVEYQPIGKYYDLAL FALKKIDSGVDAEMITQIVQMKILAAYGVEPQLKHCVICGKEKGVFDYSIKMGGVICSDH FSTVTSRMHLKPKETAVIRTIGLLPIERLGDIKINEETKRATRKAIDRIYHETIGLNLKT KKFLDELKLFS >gi|256541432|gb|ACPV01000042.1| GENE 40 44911 - 45813 973 300 aa, chain - ## HITS:1 COG:SA1396 KEGG:ns NR:ns ## COG: SA1396 COG1159 # Protein_GI_number: 15927147 # Func_class: R General function prediction only # Function: GTPase # Organism: Staphylococcus aureus N315 # 5 295 3 294 299 331 54.0 1e-90 MEEKEFKSGFVALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDEMQVVF VDTPGIFKPHSKLDDYMDKASVSSLNDVDLVLFMVEPEEMGKGDQYIANLLKEVKVPVLL VINKVDEIHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLKTIKEYLPVGPQYYGA DQITDRPEYFVVAELIREQILRLTSQEVPHATAVAVDHMNTHQNGKLLIEATIYVEKDGQ KGIIIGKGGKMLKQIGINSRQEIERLLGEKVNLRLWVKVQHNWRSDPNFLKRIGYDKKEL >gi|256541432|gb|ACPV01000042.1| GENE 41 45813 - 46337 584 174 aa, chain - ## HITS:1 COG:SA1399 KEGG:ns NR:ns ## COG: SA1399 COG0319 # Protein_GI_number: 15927150 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Staphylococcus aureus N315 # 6 161 4 152 155 114 42.0 1e-25 MDPIDITYNDEVGFLDDEKRNWQDWIMKLLLLAKKEIGKDNNLEMSINFVDEDRSHEINL KYRDKDRPTDVISFAIEDGEDSIDLAAFADDPDFQEDIGDLFMCPSVIKRHSKEYGTGFD REFGYTIVHGFLHLNGYDHIKPDEAKEMFGIQGKVLEDYGLPLYPDQLDEGRGK >gi|256541432|gb|ACPV01000042.1| GENE 42 46340 - 47299 740 319 aa, chain - ## HITS:1 COG:SP0948 KEGG:ns NR:ns ## COG: SP0948 COG1702 # Protein_GI_number: 15900827 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Streptococcus pneumoniae TIGR4 # 11 313 13 314 322 365 61.0 1e-101 MAQTTFTPQRPENIQKLVGVNDGNLKLLSEGYDLSVSDVGNEIVIAGDDEEKIKKVVAVL KALDSVVNTGVNIGAPDTVSAMKMADKGTTEYFADLYKKVLIRDAKGRPIRVKNMGQKRY VEAIDKSDVVFGIGPAGTGKTFLAVVCAIAAFKKGEVSRIILTRPAVEAGESLGFLPGDL KEKVDPYLRPIYDSLYAILGTNTTDRLMERGVIEVAPLAYMRGRTLDDAFVILDEAQNTT DAQMKMFLTRLGFNSKMVVNGDMTQVDLPGRQHSGLIDARHILKNIDQIKFINFSANDVV RHPVVAKIITAYEKEDIKH >gi|256541432|gb|ACPV01000042.1| GENE 43 47325 - 47768 475 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 147 1 147 147 187 63 1e-46 MSLSDQIMADMKSAMKNHDKTTLNTVRMIKSALMNEKIKAGHDLTPDEELTVLNREKKQR EESIDEFIKANRDDLAEETKKELAVVEKYMPKQMNQDELRAAVKETIDEVGAKGKSDFGK VMKALMPKIKGRADGKAASQSVRDQLN >gi|256541432|gb|ACPV01000042.1| GENE 44 47929 - 48105 292 58 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|58337487|ref|YP_194072.1| 30S ribosomal protein S21 [Lactobacillus acidophilus NCFM] # 1 58 1 58 58 117 100 2e-25 MAKTIVHENESIDDALRRFKRSVSRSGTLQEYRKREFYEKPSVRRKLKSEAARKRRHY >gi|256541432|gb|ACPV01000042.1| GENE 45 48333 - 49169 968 278 aa, chain + ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 12 267 10 264 270 218 43.0 1e-56 MVETKDQNELNIIIISDAAGDTAFSNATAAAAEFPNCNINYRRYPFITNQKKLDEVLTEI EKYPNLVIIYSLVKDEMQMPVIKFAREHNVECVDIFSPVVEAIQQTTHMTPDQKIGAQHS LNQKYFDRISAMEFAVMYDDGKDPKGFLEADVVLLGVSRTSKTPLSLFLANKNLKVANLP LVPETHIPKEIYEIDPKKIIGLTNDPSVLNEIRRQRMIAYGLNPDTTYSNMDSINKELES AQALYKKLGCYVINVAHRSIEETAALILEHLGIDDYAK >gi|256541432|gb|ACPV01000042.1| GENE 46 49535 - 49780 133 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|262046503|ref|ZP_06019465.1| ## NR: gi|262046503|ref|ZP_06019465.1| hypothetical protein HMPREF0508_00809 [Lactobacillus crispatus MV-3A-US] # 1 81 2 82 82 142 100.0 6e-33 LTPYAIIETVLKIHQEYNLDSIPVFCNVAHYLDETQLKELSKIVRQLKLKIILIEFTDKK YGVAVKDAQVAYIDRDLVDWY Prediction of potential genes in microbial genomes Time: Wed May 25 05:18:35 2011 Seq name: gi|256541431|gb|ACPV01000043.1| Lactobacillus crispatus 125-2-CHN cont1.43, whole genome shotgun sequence Length of sequence - 14763 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 12, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 150 - 209 6.5 1 1 Tu 1 . + CDS 261 - 884 540 ## LCRIS_01224 enterolysin A + Term 917 - 960 3.0 - Term 905 - 948 -0.8 2 2 Tu 1 . - CDS 955 - 1521 466 ## COG0225 Peptide methionine sulfoxide reductase - Prom 1570 - 1629 8.3 3 3 Tu 1 . - CDS 1638 - 1805 168 ## LCRIS_01226 hypothetical protein - Term 2615 - 2670 -0.1 4 4 Tu 1 . - CDS 2746 - 3624 775 ## COG1284 Uncharacterized conserved protein - Prom 3662 - 3721 7.1 + Prom 3698 - 3757 5.4 5 5 Tu 1 . + CDS 3795 - 4442 707 ## LCRIS_01230 temperature-sensitive replication protein + Term 4447 - 4474 0.1 - Term 4433 - 4464 1.8 6 6 Op 1 13/0.000 - CDS 4468 - 5331 1001 ## COG0083 Homoserine kinase 7 6 Op 2 . - CDS 5345 - 6580 1270 ## COG0460 Homoserine dehydrogenase - Prom 6802 - 6861 4.5 + Prom 6461 - 6520 7.0 8 7 Op 1 4/0.000 + CDS 6692 - 8182 1495 ## COG0498 Threonine synthase 9 7 Op 2 . + CDS 8202 - 9569 1241 ## COG0527 Aspartokinases + Term 9599 - 9644 1.5 - Term 9580 - 9639 -0.5 10 8 Tu 1 . - CDS 9660 - 10220 520 ## COG0406 Fructose-2,6-bisphosphatase - Prom 10271 - 10330 8.8 + Prom 10282 - 10341 7.3 11 9 Tu 1 . + CDS 10392 - 12707 1736 ## LCRIS_01236 phospholipase D/transphosphatidylase + Term 12733 - 12779 6.6 - Term 12724 - 12764 4.4 12 10 Op 1 . - CDS 12765 - 13136 189 ## LJ1253 hypothetical protein 13 10 Op 2 . - CDS 13137 - 13703 523 ## LGAS_1064 XRE family transcriptional regulator - Prom 13762 - 13821 7.7 14 11 Tu 1 . + CDS 13780 - 14019 293 ## COG0698 Ribose 5-phosphate isomerase RpiB + Prom 14153 - 14212 3.7 15 12 Tu 1 . + CDS 14408 - 14762 199 ## LGAS_1066 GNAT family acetyltransferase Predicted protein(s) >gi|256541431|gb|ACPV01000043.1| GENE 1 261 - 884 540 207 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01224 NR:ns ## KEGG: LCRIS_01224 # Name: not_defined # Def: enterolysin A # Organism: L.crispatus # Pathway: not_defined # 1 207 1 207 207 397 99.0 1e-109 MKFRKLIISLLGTALLTSSVGLSTTTASADTLDDSQNTTEVQPKNLKWAYPFKANKKNGV RPMYNAQTFGITNYMRSTTPPSYFHDGWDFGFSEVGHSNVYAIHQGTVKKVAYGNGLGWF IWVISPDNYVEVYQEGFNKKKDIYVKTGQKIKLGQKIGKLTGSHLHLGVTQTNKDYINKY GFPCKNWNVNNGTWLNPIEVIKSNLKK >gi|256541431|gb|ACPV01000043.1| GENE 2 955 - 1521 466 188 aa, chain - ## HITS:1 COG:SPy0466 KEGG:ns NR:ns ## COG: SPy0466 COG0225 # Protein_GI_number: 15674584 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 20 187 2 168 169 229 66.0 3e-60 MTENNKQAKTTDTKAKPNNDTAIFAGGCFWCMVEPFDTVDGVEKVVSGYTGGHVANPTYE QVCSGTTGHTEAVEITFDPAKISYDQLLNYYWQVTDPTDAMGQFQDRGDNYRPVIFYNSP AQKEAAEKSKQRLQASGKFDKPIVTKIEPAKPFYPAEEYHQDFYKKDPLRYAMEEAGGRA KFIKEHWD >gi|256541431|gb|ACPV01000043.1| GENE 3 1638 - 1805 168 55 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01226 NR:ns ## KEGG: LCRIS_01226 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 55 1 55 55 66 96.0 3e-10 MAKYTEVNKKWNDKNEARKLYINKRSTTKNFILNLAIEDDLEQIEKDIEERRNNL >gi|256541431|gb|ACPV01000043.1| GENE 4 2746 - 3624 775 292 aa, chain - ## HITS:1 COG:SP2113 KEGG:ns NR:ns ## COG: SP2113 COG1284 # Protein_GI_number: 15901928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 10 288 32 310 313 261 45.0 2e-69 MDQLDKFNRRYNFLSKLSAAFFYSIAVAVALNFFWTPGHMYSSGITGFAQLINTVSERYL PFTLSTSMMYFLLNFPLFILAWFKIGHKFTFFTIVAVVLGSIMMHAIQPWQMHLDPLVCA IFGASINGIGTGMALKNGISTGGLDIIGIVIRQKTGISYGKFNIFINLIIIAAAGYMFGW PRALYSALTIFINGRVIDAVYTQHQKMQVMIVTQHPQHIIDGIQNRMHRGITILHDAEGA YSHIEKTVLITIIDRYDMYDIRQIVQGADPYAFMSVSEVEKVYGRFKEQEIV >gi|256541431|gb|ACPV01000043.1| GENE 5 3795 - 4442 707 215 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01230 NR:ns ## KEGG: LCRIS_01230 # Name: not_defined # Def: temperature-sensitive replication protein # Organism: L.crispatus # Pathway: not_defined # 1 215 1 215 215 408 96.0 1e-113 MSSYYELMWRDDELTSYTTDKLNFIYNAIDHPLSVRYRQLYPNRLDWQKAVNRHNAAIQK VKDLLIERKDSHNIREAWLKLHPNARTKANNGFTVEQLANKFPYMAKQLGAFMEIENIEI KYFDGEFKPRYDLDDFSDIFSANYPTSGFKQSGITQEALLKLYPNISAKNLDQILKMADC ELEQENGTEVIPYWYAVNAKRMLIDGDSFAATFDD >gi|256541431|gb|ACPV01000043.1| GENE 6 4468 - 5331 1001 287 aa, chain - ## HITS:1 COG:lin2689 KEGG:ns NR:ns ## COG: lin2689 COG0083 # Protein_GI_number: 16801750 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Listeria innocua # 1 287 1 288 288 246 45.0 4e-65 MIIKAPASTANLGPGFDSLGMAVSLYLEVEVLSLADRFQVDHVMKGIPHDEKNLIVKTAL TVYPGLPPLHLRVKSNIPLAHGLGSSSSAIAAGIELANQIGKLGLSDEEKVQLGAKIEGH PDNIAPTILGGLVVGAEVNHHFDAVEAPLPPYALVAYVPDYNLETKTARAVLPKELAFGV ATHGSAVANTLIASLFAQDYPKAGELMEQDVFHEVYREKLVPELVKVREVAHSKHALATY LSGAGSTIMTWIEDKHVAGFLSGLRKHDLKDETLILHPDEHGVQIIQ >gi|256541431|gb|ACPV01000043.1| GENE 7 5345 - 6580 1270 411 aa, chain - ## HITS:1 COG:SP1361 KEGG:ns NR:ns ## COG: SP1361 COG0460 # Protein_GI_number: 15901215 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 1 399 1 410 428 324 43.0 2e-88 MAIKIALLGLGTVGSGVLKIIKNNKKKIRQTSGEEIIIEKALVRNPEKHRNLANEVMLTT DFDSILQDPEIKIIVELIGGLHPAKEYITAAINAGKNVVTANKDLMATFGSELINLAASK KCDLMYDASVAGGIPILRTLATSYSSDIISEIQGIINGTTNYILSQMGEKGLSYEEALKN AQELGFAEADPTNDVTGKDAAYKIVILSKFAFGTKISIDDFTIQGINNLKDFDIKQAQKL GYVIKLIGIAKNINGKLFVEVAPCLLPENAIMAHIKNELNALQIKSQSLGTAVFTGPGAG SSATANSVMSDVITEIKNVVKKTTGQPFSNFSHVMQLTSSEDVKYSYYLSFEAEETLFDL SKLLSDLEIPVREIKQVQSRIVVVTENISRQQLQDLAIQDQYLKASYKILQ >gi|256541431|gb|ACPV01000043.1| GENE 8 6692 - 8182 1495 496 aa, chain + ## HITS:1 COG:L0092 KEGG:ns NR:ns ## COG: L0092 COG0498 # Protein_GI_number: 15674085 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Lactococcus lactis # 3 496 5 496 496 494 51.0 1e-139 MQYRSTRGSKENTLTAPQAIIQGLAQDGGLYVPVAFPQANFKLEDLSKLSYKQIAAMVIS LFFDDFTKEQITTAVQSAYSEQWDDRSIVPIEKHDNHFYMELFHGPTLAFKDIALQMLPQ LMTRAVQIEKIDKDIIILTATSGDTGTASMRGFANQKGTDVIVFYPEGGVSPVQLKQMLS QRGNNLRAIAIKGNFDDAQTEVKKIFNNDSFKNRLNANGYQFSSANSMNIGRLVPQISYY LYTYGQLVRRQEIKLGDEVNFAVPTGNFGDILAGYYAKKLGLPIKKLICASNENNVLTDF FNNSVYDKRRKFHLTNAPAMDILVSSNLERLLFDLYGENNYEVASLMNQLTQRGHYQVSG EVFTKLQKNFAAGFATEEEVKSEIKRVYNYDRYVIDPHTAVGSFVANQYQKKTGDQTPMV IVSTASPYKFPETVYEAITGGPSMQTGVGAIKELHDELGGQLSIGVRALFDREPKTEKII EPNDMEKEISSILDLK >gi|256541431|gb|ACPV01000043.1| GENE 9 8202 - 9569 1241 455 aa, chain + ## HITS:1 COG:BH1500 KEGG:ns NR:ns ## COG: BH1500 COG0527 # Protein_GI_number: 15614063 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Bacillus halodurans # 1 449 1 447 456 399 45.0 1e-111 MKVVKFGGSSLASGNSVDKALSIINADPERQVVVVSAPGKRTEDDIKVTDLMITYAYMSL RSNNYQDIATRIFKRYELIAQYFELPEAELEDINQLLLTLPKLSYPNNDYRMATFKAHGE RLNAILIAKILNHQGIKARFLEPKDVGLIVTGTSNNAEVNPETYVNLKRIKAAKDEKIIF PGFYGITPSGHIATFSRGGSDITGAILARGLNADLYENFTDVDAIFSANPHIVDQPKPIK RMTYQEMRELSYAGFSVFHDEALIPAIQGEIPVNVKNTNAPEKPGTMIVPEDGFIPKHTI TGIAGGKNFAALYLRKYMLNKGAGFTLKLMEILQKHHVSYEHMPSGIDDITIIFKKDVLT DQLIDVICNEIQTSLNPDQMQWIDDYAITMVVGEGMKDKLTLCASLLYPLGKKNISIQMI NQGASQISIMIGTRRQDEEVVIKTIYDNFIAQDKI >gi|256541431|gb|ACPV01000043.1| GENE 10 9660 - 10220 520 186 aa, chain - ## HITS:1 COG:L152977 KEGG:ns NR:ns ## COG: L152977 COG0406 # Protein_GI_number: 15673696 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Lactococcus lactis # 1 184 1 183 189 165 41.0 6e-41 MTTVYFVRHAQPDLSVHDDLTRPLTEKGLQDRKKVTDYFRDKHIDQAFSSPFKRAIDTIQ PVIDEKKLTLSSISDFRERKIGDEWISNFHEYCERQWEDFDYKLRNGESLKETQKRNVAA LKLVLSKYQDQTMIIGGHGTAIGSVINYYDPSFKYEAFAMIQPKNPFIVKMNFDGEKYLE YKVVTF >gi|256541431|gb|ACPV01000043.1| GENE 11 10392 - 12707 1736 771 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01236 NR:ns ## KEGG: LCRIS_01236 # Name: not_defined # Def: phospholipase D/transphosphatidylase # Organism: L.crispatus # Pathway: not_defined # 1 771 1 771 771 1432 97.0 0 MGLEILNHTDQKLISNADFWQLVDFQRESNKFSEFKGVSFVSNIKFIEQNLIPRFDQITL ILGLTDNGSNSIGKRIDQILNKRRDLIEYSYEHQDSPFTKRILDGSLQLFFTKQNLIHTK LYLMENQSKYSAFSGSMNLTDTAVNKNMEQLVWDYGNTSDPLFNCYQQMFQDNLNQATTY INAKKLSGYLEDKNKDDLRIHVMQDSSLEIKNSPNSTGKDIIILPAEEIKKYRDHYSKDD ELKKLSENEKLVASQTVTLFGEGGNKRRKLDTIGQDLYSLTQHIIRQDKKAKADTSQIEK EEDLFPVPVQFYNNGQLFQASKIGDNIPSEVITSDLTEGQLKNALQLFCDITHEYNTYKE VGEGWQACDFMLFLYESPWLWKIRNLYELSGSNVSREDVPIATALIGQGRTGKSTLGKRL AAKLIGAHNFLDSGMMDPKNYALGKSNINMTITNTLSDYVYTNGPVSPLMIDDVSPELTT RTYFERFIKEVTNNRNLTHPSPAFIFTMNRQESSIKSQFSLKPEIMRRLWYLSFESTFSG ESDQRNAALTSLFSRANDDLFKYCQVELAKFFTNVSVEDAQKIERDFLYPIKHVLKTALD KFDMYNQVSKYFEENYDYSLFVGRNDWGMLINQAKIGSDILFIKQDDRLKAQINKELFNK ISDQTAKNSGSTMLDRYFKYLPRKYHIASQQTSTGFIIDVENFDKWLDDDTLMNKYQNSS SFRDKQQRDNQAQLTQTVDMLAKAMLEDREQRRKEEAKKKRSWLGNFFHRN >gi|256541431|gb|ACPV01000043.1| GENE 12 12765 - 13136 189 123 aa, chain - ## HITS:1 COG:no KEGG:LJ1253 NR:ns ## KEGG: LJ1253 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 3 121 4 122 130 147 60.0 1e-34 MDKEQIIRNYFRAWLSPNLEVVQNTFDENAIYSECYGPVYRNKKEIISWFENWNKQGKVI AWPIERLIINGDTSIAEWHFKCNYQGKISEFDGVSIIEFNDQNKIISVKEYQSKSKHYYP YSK >gi|256541431|gb|ACPV01000043.1| GENE 13 13137 - 13703 523 188 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1064 NR:ns ## KEGG: LGAS_1064 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: L.gasseri # Pathway: not_defined # 48 188 12 152 152 162 58.0 5e-39 MKKIIVGTPVKLSHVLIGMIVVVLLSLFLTGFGYQAWWLFLIVLILGVFVTLPTCFNPYW QISSENITIINYDINDVIKLMQLLGLHKKSKQVINLSDVKKAAVVYRKNVRLSPIDFNPD YLNLILDLGKGTNMTLTLGNVDYQQLNSIMGLLQDKNIVVDDKQNILQLLRENKNLFNHF HKKGWTSL >gi|256541431|gb|ACPV01000043.1| GENE 14 13780 - 14019 293 79 aa, chain + ## HITS:1 COG:SP0319 KEGG:ns NR:ns ## COG: SP0319 COG0698 # Protein_GI_number: 15900251 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Streptococcus pneumoniae TIGR4 # 1 79 1 81 213 68 45.0 2e-12 MKIGIIQATSQKSKNFILEKYIKESVGSNDQVFNFGIYQDSSASLSYVQVSLAVALLINS KATDFIVTGCTSGQGMMLA >gi|256541431|gb|ACPV01000043.1| GENE 15 14408 - 14762 199 118 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1066 NR:ns ## KEGG: LGAS_1066 # Name: not_defined # Def: GNAT family acetyltransferase # Organism: L.gasseri # Pathway: not_defined # 1 113 5 117 242 112 51.0 4e-24 MTTKIEKISPKIYKVTDNDKHLGTISTYHNLFHNKYIYLKFNLSDYSVNIPFSKIVQAEH QALQVMIDSNENPIVDFLLRNGFICKRHCYTLTVNKKDLKIEINNKLSLHFFNTESPD Prediction of potential genes in microbial genomes Time: Wed May 25 05:19:01 2011 Seq name: gi|256541430|gb|ACPV01000044.1| Lactobacillus crispatus 125-2-CHN cont1.44, whole genome shotgun sequence Length of sequence - 1886 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 323 324 ## LCRIS_01238 ABC transporter, ATPase and permease components 2 1 Op 2 . - CDS 320 - 1648 1012 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 1728 - 1787 6.7 Predicted protein(s) >gi|256541430|gb|ACPV01000044.1| GENE 1 2 - 323 324 107 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01238 NR:ns ## KEGG: LCRIS_01238 # Name: not_defined # Def: ABC transporter, ATPase and permease components # Organism: L.crispatus # Pathway: not_defined # 1 107 1 107 527 210 99.0 2e-53 MNLKAFIKTNPVRFWLTAIGWIIIPALSITNTYVVQEETNILLSRNWTKFILINVLAFLI MLVDYGVSALVDYQQQAQVQDLNDQVRDKIVKRYYYDGKKHTVAQMH >gi|256541430|gb|ACPV01000044.1| GENE 2 320 - 1648 1012 442 aa, chain - ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 14 419 103 513 535 130 24.0 7e-30 MHHYYYEKSDEKVSSMQNRLTANLKILSDDYATPWITILSGVLEIVIAIVLLASMNWILI LVTAILAVITLFAPKIMEKKTSAATDKVNKKNEKLLNTIAHWLGGLQELRRYSAYSRLVK QIHRSSSDYVDASKGSAKLRSVSYLINAFSNSIAQIGMSFIAGIMFLLNMISFGDFAVAS GFAFTIFSAIWNITQSLTQVKSTKALREQITDLRKQVPDENKDKVSAYGLKVSGLSVKYD QGETIFYPDFTIKKGQKVLLTGDSGTGKSTLFNVLLGKLKPESGTVTYLDENETIIPEGK ARIGNMPQNPVVFPATIKENITMFNENLQDKLQDVVQAVQLQSDLAKMPDGVNTTIDLKS ENLSGGQRKKVVLARTEIHEQSFVLMDEVTSAIDQKATEKIIDELLKTDQTILMIAHNFT PELKAKFDQEIKLKSKKGDKVR Prediction of potential genes in microbial genomes Time: Wed May 25 05:19:07 2011 Seq name: gi|256541429|gb|ACPV01000045.1| Lactobacillus crispatus 125-2-CHN cont1.45, whole genome shotgun sequence Length of sequence - 12158 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 6, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 152 - 199 11.3 1 1 Tu 1 . - CDS 215 - 1255 1202 ## LCRIS_01240 hypothetical protein - Prom 1354 - 1413 6.2 - Term 1764 - 1806 6.5 2 2 Op 1 . - CDS 1825 - 2487 813 ## COG1359 Uncharacterized conserved protein - Prom 2512 - 2571 7.2 - Term 2541 - 2576 4.4 3 2 Op 2 . - CDS 2583 - 3122 455 ## LCRIS_01242 hypothetical protein - Prom 3160 - 3219 5.9 4 3 Op 1 . - CDS 3221 - 3826 438 ## LCRIS_01243 transcriptional regulator 5 3 Op 2 . - CDS 3828 - 3989 160 ## LCRIS_01244 hypothetical protein 6 3 Op 3 . - CDS 4005 - 5207 1148 ## COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases - Term 5245 - 5284 6.1 7 4 Op 1 . - CDS 5287 - 5823 452 ## COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) 8 4 Op 2 . - CDS 5837 - 6688 739 ## COG0078 Ornithine carbamoyltransferase 9 4 Op 3 7/0.000 - CDS 6700 - 7131 419 ## COG0078 Ornithine carbamoyltransferase 10 4 Op 4 . - CDS 7142 - 8371 968 ## PROTEIN SUPPORTED gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 11 4 Op 5 . - CDS 8445 - 9293 740 ## COG0583 Transcriptional regulator - Prom 9321 - 9380 4.5 + Prom 9285 - 9344 8.2 12 5 Tu 1 . + CDS 9422 - 11695 2370 ## COG0474 Cation transport ATPase + Term 11719 - 11773 12.5 - Term 11706 - 11761 12.2 13 6 Tu 1 . - CDS 11763 - 12077 232 ## LCRIS_01254 putative protein without homology - Prom 12097 - 12156 5.5 Predicted protein(s) >gi|256541429|gb|ACPV01000045.1| GENE 1 215 - 1255 1202 346 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01240 NR:ns ## KEGG: LCRIS_01240 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 346 1 345 345 411 96.0 1e-113 MPGIVEQTLLEQQNIDLNEMVTMNQMIDQLLPNASKELQQKLKIKIYNFVRTRKQPSITV RRRKYFKPAVAKLIIGNVQDYADAIERRAKEAPAKEDATDKRPASKSKRVKTITKRKILA KVIKNDKIDKSIQKKLEDKIASIVKTNFIKPVNKRGSFSVEDGEKVIAELSPFYQNIKID QKYRKNAEKAAENKETETKEKPEQHSKDQNESREGQSKDFERKNNQKNSNNRNNNNQTQN QRKRQNKHPFEIRRENNNRSRNNQSNRRYNNRNNYDNRNNYEFDEASGLRERYNTVIRNY NQLEQRYNALQDKYNQALDDKARLIEEMGKKNEDLRRVLIDVLRKM >gi|256541429|gb|ACPV01000045.1| GENE 2 1825 - 2487 813 220 aa, chain - ## HITS:1 COG:FN1347 KEGG:ns NR:ns ## COG: FN1347 COG1359 # Protein_GI_number: 19704682 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 7 219 5 215 218 70 26.0 2e-12 MKLKQTPILRLYKLETNKEDHAKFVKAGQHNMLTSQENEPGTLFMQTSHDEETTNFVVEC YQDEASYDTHANSKQFKDFTDVAKDILTSRVKVELFPEFISTKAEKLAVTGSNDYVIYLT EIGVSLGKGDEFAHAVMKEMKTAVEEEKDILAMIAGTVADQPNEWLAIEVYRNNEAYKQH LETKNFKEYLNNTKYCVESKSLRKLQPDVIVDQGAIFYQP >gi|256541429|gb|ACPV01000045.1| GENE 3 2583 - 3122 455 179 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01242 NR:ns ## KEGG: LCRIS_01242 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 179 4 182 182 314 99.0 1e-84 MLKRTLLPLTSMVLVLGLTGLASQVETVDASTYGNGVQVTIPKKMQGTWYSYDRNAHNGT KITFTEHTVNGKPIFTQEASTISDYFNGRIANQKNFDKVTQNWMSGKTTKMKNDTFYEID PWITFENWSLYRVVPQTINGKKHNVLVYSSRYDGGNYFRSKKLAKKMKDYKFKKVNYTL >gi|256541429|gb|ACPV01000045.1| GENE 4 3221 - 3826 438 201 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01243 NR:ns ## KEGG: LCRIS_01243 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 201 5 205 205 367 99.0 1e-100 MTELKIAYFDQLGRKELDQAVQHFVLKHPNVDVKLLATSHDGAFAKLNEDEADIAINDLR DENLNFDETELTQAGVMAILPKGMYPNGIQMIEKDELNDMTCFIVAKPEEEVSELHLFKD LYQIGSQFIASNSVEEAALLVASRSGYFILNENTARLINTTDLQPLFLLDHGQLIKQKIM AFYKSNSALSSEFIKLLQQEY >gi|256541429|gb|ACPV01000045.1| GENE 5 3828 - 3989 160 53 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01244 NR:ns ## KEGG: LCRIS_01244 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 53 1 53 53 90 100.0 2e-17 MSKEKKLNLIKLFGIVVSGLNLIFFALMALNKHEDTKDKRRVAEEGHAPLDEK >gi|256541429|gb|ACPV01000045.1| GENE 6 4005 - 5207 1148 400 aa, chain - ## HITS:1 COG:L174946 KEGG:ns NR:ns ## COG: L174946 COG4552 # Protein_GI_number: 15672154 # Func_class: R General function prediction only # Function: Predicted acetyltransferase involved in intracellular survival and related acetyltransferases # Organism: Lactococcus lactis # 15 328 1 317 350 141 27.0 2e-33 MNKFIDVRIGISMELKKNKNNLKQITALIQYAFLKNNDLTKDENFMSRYDHSTGYGYFDK EKLASYIMVNRFKSDVFGHHLPMAGIGYVASYPEYRGQGHISQLMKEILHDLHRQDIPFA NLAPFSESFYRQYGFSNSIYQKEYRFDGSALRSFKLPRSGHIVRGKWDNLAVQNGVIQLY ERQLHTDDERNTVVREAWWWNRLDSYYHHRNVAVYFDADERPISYLIYRIRDNTFLADEM YAITPQGLLSMFGFMGSHAGSVKQFKMSVPEKSLRAELFPEQNELQVDLRPYMMSRIIDF EKVLACMRPMQEGDFNLEVNSDEQCPWNIGVWQLSNHGRKVAVERKEDALVDFSGSITAW TQVLLGRLTMNAAVKLGLITDYRIKKLDFVKGDVSFYDYF >gi|256541429|gb|ACPV01000045.1| GENE 7 5287 - 5823 452 178 aa, chain - ## HITS:1 COG:SPy1190 KEGG:ns NR:ns ## COG: SPy1190 COG3697 # Protein_GI_number: 15675159 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) # Organism: Streptococcus pyogenes M1 GAS # 2 176 4 178 192 110 34.0 2e-24 MNIFNEGKKQDIAQVLAAKDRRVAVQHKIFNKYPNQTLVDIKMNIPGPIKNNRYLTKMFM LGINELENAWTNLGYHFKLVTQLNDDSGCENFYVLSLSIEKVKRSTIDFENQISLGRLFD ADVLVKNKQAAISRRDLGRQPRKCFLCDRPAKECARSRRHSVEQMQAFISQLYQEYVA >gi|256541429|gb|ACPV01000045.1| GENE 8 5837 - 6688 739 283 aa, chain - ## HITS:1 COG:L0109 KEGG:ns NR:ns ## COG: L0109 COG0078 # Protein_GI_number: 15674018 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Lactococcus lactis # 1 159 188 347 354 231 68.0 2e-60 MLGVNVHIVTPKPLFTHPDVQKIAQNFAQDSGSKNLITDDIAQGVKGANVVYTDVWVSMG ENDWSERIKLLKPYTVTMKMMQMTGTPDDQLIFMHCLPAFHDRTTQVGEEIYEKYGLNEM EVTDEVFNSKYAWQFTEAENRLHSIKAVMAATLGNLFIPIACGGGGILVIVKDGHLRGVA GVIDKDFSAAKMAEDINADELVILTTVDHAFLNYGKENQQAIGKIKVEQLKQYLAAGYFA AGSMKPKIEAAIEFVEKTGNLAIITSLSNANKLADGVGTIIYN >gi|256541429|gb|ACPV01000045.1| GENE 9 6700 - 7131 419 143 aa, chain - ## HITS:1 COG:L0109 KEGG:ns NR:ns ## COG: L0109 COG0078 # Protein_GI_number: 15674018 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Lactococcus lactis # 4 130 11 137 354 194 70.0 4e-50 MKYLQNVFQGRSFLDCKDYTPAEISYLIDFALHLKELKKEHIPHEYLKGKNIALLFEKAS TRTRSAFVVACNDLGAHPEYLGASEIHLGKKESVKDTAKVLGSMYDGIEYRGFAQEDVEE LAKYSGVPVWKWVMAAIMLPTVF >gi|256541429|gb|ACPV01000045.1| GENE 10 7142 - 8371 968 409 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 [Streptococcus pneumoniae SP23-BS72] # 2 409 3 409 409 377 49 1e-104 MSSPIHVYSEIGKLKTVMLHRPGKELENLAPDILHRMLIDDIPYLKIAQEEHDAFAHVLR QQGIKVLYLEDLLAESLTDEKVRRAFLDQLLDESSIKKQDPLHQLLLNYLQELLTKEMVK TVIAGIRKSAIHNSTPSLADLAEDPDYPFYLDPMPNVYFTRDQQAAIGSGMTINRMTFRA RRRESLFMETILKNHPDFKNATIPVWRDRYHHGRLEGGDELVLNNHVLAVGISQRTSATA ITDLAHNLFDHSSYDTILAIKIPHNHAMMHLDTVFTMINYNQFTVHPFILDKAGKIDIYV LQPDDHNGVKITEKNDLVQVLKENLHLSELDLIPTGGGDPIAAPREQWNDGSNTLAIAPG EVVTYDRNYVSNDLLRKHGIIVHEIRSSELSRGRGGPRCMSCPLIREDL >gi|256541429|gb|ACPV01000045.1| GENE 11 8445 - 9293 740 282 aa, chain - ## HITS:1 COG:CAC2394 KEGG:ns NR:ns ## COG: CAC2394 COG0583 # Protein_GI_number: 15895660 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 1 276 1 278 286 202 39.0 5e-52 MNLKQLRYFLVVAEEKQITAAAKRLYIAQPPLSYQLKQLEKELGAQLFKRTAHGIELTDV GQIFQSYANEIISLAQNAENQVHKTISGELGTIAIGMASSSTGLIPMNSFNELRKYYPEI SFDIYEDNTYGILDKLEKKTIDLGIVRTPYNQTGLNTKTLTTEKMMAISVDPDFQQKKEL RIKDLADQPLIIYRRFEDIFNQTFAHHGLKPFYAVKCDDSRTAITWAKRKMGVALVPESI ATTYAQENMIAIKHANWITHLQLVWRKDHQVTPLMKKIIAAI >gi|256541429|gb|ACPV01000045.1| GENE 12 9422 - 11695 2370 757 aa, chain + ## HITS:1 COG:Ta1045 KEGG:ns NR:ns ## COG: Ta1045 COG0474 # Protein_GI_number: 16082076 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Thermoplasma acidophilum # 7 749 21 770 780 389 33.0 1e-107 MSDKFHGLTQAEADKRLKEDGLNEVPEPEYNFFKEFLSKLWNLSAWILEAALILECILGK WVQSLFVLLMLLFAAFNGASKKKQSRRVLNNISHKLTPTVSVERDGKWIKLDSKQLVKGD LISLKRGDVLAADVKIVDGNLACDESSITGESKPVKKAIDDTAFAGTTVVEGDGLAVVTA TGKDSRSGKTINLINNSAAPGHLQQLLTKIIYYLCLLDGVLTLVIIIASFFKGGNFNTFI NMLPFLAMMFIASIPVAMPSTFALSNSFEATRLSKEGVLTSDLTGIQDAANLNLLLLDKT GTITENKTAVAAWTDLSDLPDKDVLALAGAATDKRNAGIIDTAIDEYLVENNIPVMNAEN FTPFTSDTGYSMADVAGHNVKLGSFKQLSLIDKHADEEISGINFKAGRSVAVLIDDKLAG VLILQDKVRTDSKAALAELKKRGVRPIMLTGDNQKTAAAVAEQVDLTGKVISIHDFNENT DINDLAGIADVLPEDKLKMVKLFQEKGYIVGMTGDGVNDAPALKQAEVGIAVSNAADVAK RSGKMVLLDDGLGSIVKILDAGHRVYQRMTTWSLTKLARTAELTMLLTFGYLFFDYIPMA LNAMVIYTIMNNMVTMMIGTDRTHITYKPENWNMAKLAKIAFSLAAGWTLIGIGFVWFLN THGWSHGAVSTMVYVYLVLSALLIVLITRTRKYFWQDYPSKLVGSVQIADVLLTFILALC GWAMVQISIQNLAITVIVAIIAAIIIDLIYQPVMKNR >gi|256541429|gb|ACPV01000045.1| GENE 13 11763 - 12077 232 104 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01254 NR:ns ## KEGG: LCRIS_01254 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 104 1 104 104 170 97.0 2e-41 MKRCKNWVVTIVAFLMLVGEISVLPANLQGSTSVVNAAIHHRRRKHQYRDKTKIYTSNYR IVDNKRSKIFHVMRGHNYRMNRENAVFFKSKAAARAAGYRESKR Prediction of potential genes in microbial genomes Time: Wed May 25 05:19:22 2011 Seq name: gi|256541428|gb|ACPV01000046.1| Lactobacillus crispatus 125-2-CHN cont1.46, whole genome shotgun sequence Length of sequence - 1882 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 10 - 339 405 ## COG0670 Integral membrane protein, interacts with FtsH 2 1 Op 2 . - CDS 363 - 554 74 ## gi|227878802|ref|ZP_03996710.1| hypothetical protein HMPREF0506_1711 - Prom 618 - 677 4.7 + Prom 700 - 759 5.2 3 2 Tu 1 . + CDS 787 - 1881 1051 ## COG3589 Uncharacterized conserved protein Predicted protein(s) >gi|256541428|gb|ACPV01000046.1| GENE 1 10 - 339 405 109 aa, chain - ## HITS:1 COG:SP1972 KEGG:ns NR:ns ## COG: SP1972 COG0670 # Protein_GI_number: 15901795 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Streptococcus pneumoniae TIGR4 # 1 107 130 235 235 84 48.0 6e-17 MAILGTITKKDLSRIGSYASAALIGLIVAMLANLFLHNPIIDYVFSIIAVIIFTILTAWD AQRMKDIYLQYGDDLSTNGLAVLGALQLYLDFVNLFLQFLDIFGANEDK >gi|256541428|gb|ACPV01000046.1| GENE 2 363 - 554 74 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878802|ref|ZP_03996710.1| ## NR: gi|227878802|ref|ZP_03996710.1| hypothetical protein HMPREF0506_1711 [Lactobacillus crispatus JV-V01] # 1 63 1 63 63 73 100.0 3e-12 MFFSKIYGYMALAVFVSAISAYLTMTVFAGPISAFIAQHQLFTALPLLLLQVHIVDKILL QHL >gi|256541428|gb|ACPV01000046.1| GENE 3 787 - 1881 1051 364 aa, chain + ## HITS:1 COG:L176316 KEGG:ns NR:ns ## COG: L176316 COG3589 # Protein_GI_number: 15672155 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 3 364 1 363 364 352 48.0 8e-97 MTMRSLGLSIYPGHSKFEGNAHYLDLAHKYGFSRIFMSMLEVQGSPEETKAKYKKIIEYG NKLGFQTFLDVNPAIFKQLGVSYDDLKFFADIGAAGIRLDTTFDGAIEAMLSYNPYGLII ELNMSNNVDYLNNIISYQANTPFIYGCHNFYPQRGTGLPYDFFIACSERFKKFGIHSAAF VSSQVGQMGPWNVEDGLPTLEQDRNLPIDVQAMHLWASGLIDDVIIGNAYASEAELKALS KVNRYQLMLHVNYVTDVNKIEKTIVEAPQHFRRGDITKDVIRSTMPRVTYADIPNPVHDN NVEFQRGDIIIGNDNFGHYKNELQIVLEPHKESRMNKVGSIRSDELFLLDFIKPWSKFKL IGNK Prediction of potential genes in microbial genomes Time: Wed May 25 05:19:44 2011 Seq name: gi|256541427|gb|ACPV01000047.1| Lactobacillus crispatus 125-2-CHN cont1.47, whole genome shotgun sequence Length of sequence - 48987 bp Number of predicted genes - 44, with homology - 44 Number of transcription units - 15, operones - 11 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 7/0.000 - CDS 34 - 561 672 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 605 - 664 1.8 2 1 Op 2 . - CDS 666 - 2939 2125 ## COG0608 Single-stranded DNA-specific exonuclease - Prom 2996 - 3055 4.3 3 2 Op 1 . - CDS 3063 - 3749 708 ## COG3764 Sortase (surface protein transpeptidase) 4 2 Op 2 . - CDS 3752 - 5590 2049 ## COG0481 Membrane GTPase LepA - Prom 5612 - 5671 8.7 - Term 5759 - 5796 1.5 5 3 Op 1 31/0.000 - CDS 5807 - 6958 1545 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain - Prom 6978 - 7037 1.8 - Term 6973 - 7016 7.5 6 3 Op 2 29/0.000 - CDS 7041 - 8894 2676 ## COG0443 Molecular chaperone 7 3 Op 3 21/0.000 - CDS 8911 - 9495 607 ## COG0576 Molecular chaperone GrpE (heat shock protein) 8 3 Op 4 . - CDS 9508 - 10557 915 ## COG1420 Transcriptional regulator of heat shock gene - Prom 10604 - 10663 6.6 - Term 10651 - 10688 4.1 9 4 Op 1 12/0.000 - CDS 10694 - 11644 538 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 10 4 Op 2 26/0.000 - CDS 11650 - 12543 849 ## COG0130 Pseudouridine synthase - Term 12560 - 12594 4.2 11 4 Op 3 32/0.000 - CDS 12599 - 12964 527 ## COG0858 Ribosome-binding factor A 12 4 Op 4 10/0.000 - CDS 12984 - 15587 3103 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 13 4 Op 5 8/0.000 - CDS 15592 - 15903 498 ## PROTEIN SUPPORTED gi|227878817|ref|ZP_03996724.1| ribosomal protein L7/L12 14 4 Op 6 22/0.000 - CDS 15906 - 16181 419 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 15 4 Op 7 32/0.000 - CDS 16211 - 17404 712 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 16 4 Op 8 4/0.000 - CDS 17424 - 17900 521 ## COG0779 Uncharacterized protein conserved in bacteria - Prom 17939 - 17998 1.9 - Term 17909 - 17944 5.1 17 4 Op 9 5/0.000 - CDS 18011 - 22159 3686 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) - Prom 22266 - 22325 4.5 - Term 22163 - 22225 10.3 18 5 Op 1 7/0.000 - CDS 22327 - 24024 2040 ## COG0442 Prolyl-tRNA synthetase 19 5 Op 2 12/0.000 - CDS 24052 - 25308 1307 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 20 5 Op 3 32/0.000 - CDS 25321 - 26136 700 ## COG0575 CDP-diglyceride synthetase 21 5 Op 4 19/0.000 - CDS 26139 - 26873 643 ## COG0020 Undecaprenyl pyrophosphate synthase 22 5 Op 5 33/0.000 - CDS 26876 - 27433 698 ## COG0233 Ribosome recycling factor 23 5 Op 6 24/0.000 - CDS 27433 - 28158 1165 ## COG0528 Uridylate kinase - Prom 28178 - 28237 6.9 - Term 28237 - 28280 7.9 24 6 Op 1 38/0.000 - CDS 28303 - 29328 461 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts 25 6 Op 2 . - CDS 29362 - 30135 1318 ## PROTEIN SUPPORTED gi|227878829|ref|ZP_03996736.1| ribosomal protein S2 - Prom 30230 - 30289 2.5 26 7 Tu 1 . - CDS 30300 - 31331 907 ## COG4123 Predicted O-methyltransferase - Prom 31358 - 31417 8.2 + Prom 31317 - 31376 9.2 27 8 Op 1 . + CDS 31405 - 32019 553 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Prom 32044 - 32103 5.7 28 8 Op 2 . + CDS 32156 - 33310 1272 ## COG2230 Cyclopropane fatty acid synthase and related methyltransferases + Term 33325 - 33366 1.1 - Term 33306 - 33362 6.4 29 9 Op 1 . - CDS 33370 - 35313 1981 ## COG3590 Predicted metalloendopeptidase - Prom 35347 - 35406 8.0 - Term 35361 - 35397 -0.6 30 9 Op 2 35/0.000 - CDS 35408 - 37207 206 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 31 9 Op 3 . - CDS 37200 - 38843 224 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P - Prom 38901 - 38960 5.8 - Term 38974 - 39028 12.6 32 10 Op 1 . - CDS 39045 - 39263 316 ## lhv_1362 hypothetical protein 33 10 Op 2 . - CDS 39330 - 39596 359 ## LCRIS_01293 hypothetical UPF0291 protein - Prom 39647 - 39706 9.0 + Prom 39636 - 39695 5.7 34 11 Tu 1 . + CDS 39753 - 40379 708 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) + Term 40390 - 40424 5.5 35 12 Op 1 . - CDS 40418 - 41197 638 ## LCRIS_01295 acyl-CoA thioesterase 36 12 Op 2 . - CDS 41190 - 41849 599 ## COG1573 Uracil-DNA glycosylase - Prom 41946 - 42005 7.2 - Term 42123 - 42164 3.1 37 13 Tu 1 . - CDS 42199 - 43323 966 ## LCRIS_01297 putative protein without homology - Prom 43354 - 43413 5.5 - Term 43380 - 43412 4.0 38 14 Op 1 33/0.000 - CDS 43436 - 43813 633 ## PROTEIN SUPPORTED gi|227878845|ref|ZP_03996752.1| 50S ribosomal protein L19 - Term 43834 - 43876 3.4 39 14 Op 2 30/0.000 - CDS 43897 - 44616 803 ## COG0336 tRNA-(guanine-N1)-methyltransferase 40 14 Op 3 12/0.000 - CDS 44606 - 45121 168 ## PROTEIN SUPPORTED gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 - Term 45133 - 45171 1.5 41 14 Op 4 23/0.000 - CDS 45188 - 45460 467 ## PROTEIN SUPPORTED gi|58337565|ref|YP_194150.1| 30S ribosomal protein S16 - Prom 45487 - 45546 6.5 42 14 Op 5 8/0.000 - CDS 45548 - 46978 1599 ## COG0541 Signal recognition particle GTPase 43 14 Op 6 . - CDS 46982 - 47323 326 ## COG2739 Uncharacterized protein conserved in bacteria - Prom 47463 - 47522 10.2 + Prom 47406 - 47465 11.6 44 15 Tu 1 . + CDS 47515 - 48927 1685 ## COG0531 Amino acid transporters + Term 48952 - 48983 3.1 Predicted protein(s) >gi|256541427|gb|ACPV01000047.1| GENE 1 34 - 561 672 175 aa, chain - ## HITS:1 COG:FN1483 KEGG:ns NR:ns ## COG: FN1483 COG0503 # Protein_GI_number: 19704815 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Fusobacterium nucleatum # 3 172 1 170 170 209 57.0 3e-54 MAVDFSKYIASVKDFPNKGIVFRDITPILQDGELYRAATHELAEYAKSKKADVIVGPEAR GFIVGCPVATELGLGFVPARKPHKLPREVERASYDLEYGSNSLEMHKDAIKPGQRVVVCD DLMATAGTLRASKELIENLGGKLVGAAFYIELPDLHGRDKLPDVDIYSLVQYHGA >gi|256541427|gb|ACPV01000047.1| GENE 2 666 - 2939 2125 757 aa, chain - ## HITS:1 COG:L0259_1 KEGG:ns NR:ns ## COG: L0259_1 COG0608 # Protein_GI_number: 15672614 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Lactococcus lactis # 15 544 22 549 558 390 38.0 1e-108 MKWQERTADELAPDLIEKYQLGPIAAKLFALRGINTDEKLDFWFNATEENLADPALMHDM DKAINRINQAIDSGEKITIYGDYDADGITATTIMTETLSILGADVHYFIPNRFNDGYGPN MDRYQDIVADGTRLIITVDNGVTGVEEVKYAQEHNVDVIITDHHTFQEKKPAAYATVHCN YPGQKYPFDDYCGAGVAYTICRGLMQDTMPELLDLAMIGTIGDMVKVTGEGHIIVKRGLE MLNQTDRPGLRALIKNAGLTLGSINETDVGFNIAPRLNAVGRLDNANLAVELLLSDDDLE AQKIADKIEELNNKRRELTTEVYDKCMTLIHKNSWQKQNTLVLYDPEFHEGVLGLVANKI VEKTHKPTIVLTKNDAGEVKGSGRSFAGFNLFDALNPIKDQYLTKFGGHDFACGLSLEEN QIAPLREKFEDDFHVEGGLETKKYDMELPMQGLTPQTLAQINQVGPFGTGDTQPIFSISN PTITHFFKMGKDKNHVKFTVAKKGGNLSVIGFNKGFLNNNLLPFISQIFVQLSLNTYRNQ VSLQGIMTGLAFASPKLAVPTPVVDLRQEKYVMGFADRYLLFDQKNIPIVRNRLQIDEDK ISLVKDYDQTGETVALLDVPRNQIELNAALEKDYQQIYLRFLLDQLPVEQIPAKNYFGAV LKYIYSHPTLKPADYRTVAPYLGLDYDSVLFILRVFFELGFVKLDEGKLVGEPSPKKQPL TASKYLMGTSSQIKFVNQLRTMPSQRLITYVNNLTNK >gi|256541427|gb|ACPV01000047.1| GENE 3 3063 - 3749 708 228 aa, chain - ## HITS:1 COG:L125196 KEGG:ns NR:ns ## COG: L125196 COG3764 # Protein_GI_number: 15673095 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Lactococcus lactis # 3 228 44 280 287 130 36.0 2e-30 MAKNKKNSVSTILLRVAAIILLLVGIALIFNKQISDQLIHHNQQSTLSGINRKTIEENKK KKGMYDFSKVKSLGIAQAARSQVKKTSGAIGALAIPDVNMYLPIMLGMSDDAMSTGGGTM RADQVMGKGNYPLAGHYMTAKGILFSPLEDVKKGELVYLTNLNKVYVYRIYMKKIVDPTA VWLVDNTKKNIVTLITCADGGKNRWAIRGNLIKTEKANNNNLKVFKLK >gi|256541427|gb|ACPV01000047.1| GENE 4 3752 - 5590 2049 612 aa, chain - ## HITS:1 COG:L0159 KEGG:ns NR:ns ## COG: L0159 COG0481 # Protein_GI_number: 15673090 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Lactococcus lactis # 1 607 1 607 607 803 64.0 0 MDLKKLKDYQKHIRNFAIVAHIDHGKSTIADRILELTDTVSQRQLKNQMLDDMPLERQRG ITIKMNSVEVKYHAEDGEDYIFHLIDTPGHVDFSYEVSRSLAACEGALMVVDASQGVQAQ TLANTYLAIDDDLAILPVINKIDLPSADVPKTKEEIEEMLGLDASEAAEVSGKTGQGIKD MLEKVVKDIPAPSGDITAPLKALIFDSKYDDYRGVVMSVKIEDGSIKPGDRIQIMNTGKE YEVTEVGVSSPHPIKKDILIAGDVGYITANIKSVRETRVGDTITQADNPTAEPLPGYRQI PPMVYSGMYPVDNRDYEDLKEALQKLQLNDAALEFEPETSTALGFGFRCGFLGLLHMDVV QERLEQEFDLDLIMTAPSVDYHAIMNDGTTKVIDNPSDLPDAGEYKEVQEPYVKAEIMVP NDFVGPVMELCQRKRGEFVTMDYLDKYRVNVIYNMPLAEIIFDFFDDLKSSTKGYASLDY EITGYRATDLVKIDILLNKEPIDALSFIAHRSEAQDRARQMTSMLKKLIPRQNFEVDIQG AIGAKIISRATIKPYRKDVTWKIHTGDPDRRAKLLEKQKRGKKRMKAVGRVEVPQDAFMA VLKMNDDDINGK >gi|256541427|gb|ACPV01000047.1| GENE 5 5807 - 6958 1545 383 aa, chain - ## HITS:1 COG:SPy1759 KEGG:ns NR:ns ## COG: SPy1759 COG0484 # Protein_GI_number: 15675605 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Streptococcus pyogenes M1 GAS # 1 379 1 373 378 343 52.0 3e-94 MAQEDYYKVLGVDRDASDQEISRAYRKLAKKYHPDLNHEPGAEEKYKQVNEAYEVLHDKQ KRAQYDQFGSAGVNGQGGFGGGAGQGFGGAGFDTSGFGDFGDIFGDIFGQGRQQRVDPTA PQRGQDLDYQLTIDFMDAIKGKKTQVSYTRSETCETCGGNGCEKGTHPITCDKCHGTGYM TITQQSMLGMIRRQTTCDKCHGRGVIIEHPCKTCGGKGTVDRKNTIEVDIPAGIDNGQQL RYQGQGEAGINGGPYGDLYINYRIKPSKDFERRGQTIYTEVPISFAQATLGDEINVKTVH GDVKLTIPAGTQPNKKFTLRGQGVPYLRGNGNGDQITTVNIVIPKHINDKQKKDLTNFVH DGGGNITPQEKGFFERLKDKFNM >gi|256541427|gb|ACPV01000047.1| GENE 6 7041 - 8894 2676 617 aa, chain - ## HITS:1 COG:SP0517 KEGG:ns NR:ns ## COG: SP0517 COG0443 # Protein_GI_number: 15900431 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Streptococcus pneumoniae TIGR4 # 1 573 1 573 607 775 75.0 0 MSKVIGIDLGTTNSAVAVLEGKEPKIITNPEGNRTTPSVVAFKDGEVQVGEVAKRQAITN PNTIVSIKRHMGEADYKVKVGDKEYTPQEISAFILQYIKKFSEDYLGEEVKDAVITVPAY FNDAQRQATKDAGKIAGLNVQRIINEPTASALAFGLNKDQDEKVLVYDLGGGTFDVSVLQ LGDGVFQVLSTNGDTHLGGDDFDHRIMDWLIKNFKDENGVDLSKDKMAMQRLKDAAEKAK KDLSGVSSTHISLPFISASEAGPLHLEADLTRAKFDELTADLVEKTKVPFDNALKDAGLT VNDIDKVILNGGSTRIPAVQKAVKEWAGKEPDHSINPDEAVAMGAAIQGGVISGDVKDIV LLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQIFSTAADNQPAVDVHVLQGERPMAAD DKTLGRFELTDIPPAPRGVPQIQVTFDIDKNGIVNVSAKDMGTGKEQKITIKSSSGLSDE EIKRMQKDAEEHADEDKKRKEEADLRNEVDQLIFTTDKTLKDTKDKLSDSDRKPVEDALE ALKKAQKDNNLDEMKEKKDALSKAAQDLAVKLYQQNGGAAGQAGPQAGPQGPQGGNSNNG NNGNAQDGEFHKVDPNK >gi|256541427|gb|ACPV01000047.1| GENE 7 8911 - 9495 607 194 aa, chain - ## HITS:1 COG:SP0516 KEGG:ns NR:ns ## COG: SP0516 COG0576 # Protein_GI_number: 15900430 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Streptococcus pneumoniae TIGR4 # 30 192 22 172 174 107 48.0 2e-23 MSKEEFPSEKNLEQKEKTSEPKAKKEADKGEEKKQEKNKQDQKLAKELADLKDKNKDLED KYLRSEAEIQNMQNRYTKERAQLIKYESQSLAKDILPAMDNLERALSVEADDDVSKQLKK GVQMTLDALVKAMKDHGVVEIEADGVKFDPTLHQAVQTVAAENDDQKDHVVQVLQKGYQY KDRTLRPAMVVVAQ >gi|256541427|gb|ACPV01000047.1| GENE 8 9508 - 10557 915 349 aa, chain - ## HITS:1 COG:lin1512 KEGG:ns NR:ns ## COG: lin1512 COG1420 # Protein_GI_number: 16800580 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Listeria innocua # 1 345 1 340 345 242 39.0 8e-64 MLTERQELILKTIITDFTQSHEPVGSKTVMKQLPIKVSSATIRNEMAVLEEQGLIEKTHS SSGRIPSSEGYRYYLDNLVEPLQLPESVYNTIGSQLDRPFHQVNEIVQEAARILSDLTNY TAFAEGPESHDVRVTGFRIVPLSQRQIMAILVTSDGNIQNQVYALPHNIHGEEIEKAVRM INDQLVGKSLNEINVSLLSELAKNELGGEHVTELLSLVEDVVKDAASEQMYVDGQINLLN NTSEHDVNDIRSLYELIDHNNLFTNLMDAKVDPKSGNYPVKVKLGSELPNDLLKNYSLLT AEYSVGSHGKGTIALLGPTNMPYSQMIGLLEYFRNELAKKLLDYYGKFQ >gi|256541427|gb|ACPV01000047.1| GENE 9 10694 - 11644 538 316 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 6 315 1 315 317 211 34 5e-54 MKELAVKIVHLTYPVKENILSTRIVLALGFFDGVHLGHQRLINQAKEIALQKKLSLVVLT FDRHPKEVYESKRDFKYLETLEEKANKMAELGVDYLAVLPFTKNFSQISAQEFVDNVIVR LNADTVVAGFDYTYGSKNIANMANLPQFSKGRFNIVVMPKQTFNGRKIGSTEIRQAIKDG QMKLATELMGHHYVMSGIIGHGKRNGHKLGYPTANLIWAEHKVIPKIGVYATKTKVNGKW YNSMTSVGYNVTINQDKKIYIESNIFDFNEDVYGKPMKIKWYKYTRGEKKFAGLPELKEQ LERDEQEIRAYFKQKG >gi|256541427|gb|ACPV01000047.1| GENE 10 11650 - 12543 849 297 aa, chain - ## HITS:1 COG:SP1212 KEGG:ns NR:ns ## COG: SP1212 COG0130 # Protein_GI_number: 15901075 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Streptococcus pneumoniae TIGR4 # 2 289 1 287 292 227 43.0 2e-59 MLNGILVIDKDKGMTSADVVYHLRRVLHIRKIGHAGTLDPEVTGVLPIAIGQATKLIEMM HTRPKEYIGTGLFGYSTDSYDATGTVLKEKKLIQPFSGAEIQENMNKFVGEIVQVPPIYS AVKVNGKHLYEYAREEIEVERPQRKVEVKQYDLTKEPVFDINTGQESFDFKIKCSKGTYV RSLVNDLGEKLDCPATMTYLRRTASSGFDITQAVKLKEIEENPKKATELIQPIDAFFKEY TQVDLTEEKWLKVKNGAGISLETNAKKVALRYNKKVKAIYEKKGKLYRPSLMLLQNE >gi|256541427|gb|ACPV01000047.1| GENE 11 12599 - 12964 527 121 aa, chain - ## HITS:1 COG:SPy1719 KEGG:ns NR:ns ## COG: SPy1719 COG0858 # Protein_GI_number: 15675570 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Streptococcus pyogenes M1 GAS # 3 114 6 117 118 108 48.0 3e-24 MKHRIGRVEGEILRELTKILQKNIRDPRLSGVTITAVECTNDLSYATVYYSLLTEDEHKE EEVQAGFEKAKGMMRHLLGQTLTVYKVPELIFKRDNSVLYGSKIDRLIAEVKKQDAKRES K >gi|256541427|gb|ACPV01000047.1| GENE 12 12984 - 15587 3103 867 aa, chain - ## HITS:1 COG:lin1362 KEGG:ns NR:ns ## COG: lin1362 COG0532 # Protein_GI_number: 16800430 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Listeria innocua # 137 867 54 782 782 690 54.0 0 MAKKRIYEIAKEVGVDNKVVVQKAKDLGLDVKNHMSSVDDSQVAKLKNSFQNSAPAAKSS NKKNKIKISVSSIRKNEKKQEDNNSSKNSKRRNNKRRSNNHGHENKNDRRNNTGKPKAAA LLQQFKQKQRAEEGQLNREAQKARKEYHEQLRHPKQEQPVKDNKKTSNHKDNKKKAEPVE KKVIGPKILKPSPARLKKQQPEATKELVQVTIPEAPKEEKRGNNRGSNMGKPGRKGKNQF GNGRSDHSDRSERKRRKNKKRQQEQKPKKTLTKRKERPLPETLVYEEGMNAQDIGKLIHR EPAEIVKKLFMLGVMTNQNQSLDKDTIELLAAEYGINAEQKVHEDISDIDNIYDKRMEES KESKNQVKRPPVVTIMGHVDHGKTTLLDRLRHTHVSAHEAGGITQKIGAYQVRLDDRLIT FLDTPGHAAFSNMRARGAEITDIVVLVVAADDGVMPQTVEAIDHAKSANVPIIVAINKMD KPGANPQHVTEELMKYNLIPEDYGGDTIFVNISAKTGQNVDDLLQMILLQSDVMELKANP TEMAIGTVIEARLSRGRGPVADVLIQQGTLNVGDPIVVGNTFGRVRTMTNDRGRQVKKAT PSEPVEITGLNDVPESADKLVEFKDEKTARSVGEARAQQALQKSRENVQHVTLDNLFDTM KKENMKEVDIVLKADVQGSVEALQQSLEKIEVEGVRVNIIHSGVGAINESDVTLAGASNA FIIGFNVRPTATAKSQAETDGVDIRLYSIIYKAIDDVTAAMKGMLEPTYEEKVIGNLTVR ETWKVSKVGTIAGSFVDKGLVKNDSKIRVIRDGIVKYDGEIASLKRFKDDVKEVKQGNDC GLTIKDYNDIKVGDEFEVYEMQQVEPK >gi|256541427|gb|ACPV01000047.1| GENE 13 15592 - 15903 498 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227878817|ref|ZP_03996724.1| ribosomal protein L7/L12 [Lactobacillus crispatus JV-V01] # 1 103 1 103 103 196 99 2e-49 MQNRQKAINLLGLAERAGKLTTGTETVINELNKHKIKAVIMASDVQDNTAEKVNRAARKD NIPMITMFTAIELSKAIGKKRKVLGLTDAGFAKALVKKINEGV >gi|256541427|gb|ACPV01000047.1| GENE 14 15906 - 16181 419 91 aa, chain - ## HITS:1 COG:L175136 KEGG:ns NR:ns ## COG: L175136 COG2740 # Protein_GI_number: 15672747 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Lactococcus lactis # 1 87 8 94 108 78 47.0 4e-15 MRKDLLTDTMQPKKELVRIVIDKEKNVSVDPTGKKAGRGAYVSLDPSKIEAAKEKNVLER SLGAKVPDTFYDELYSYVDHQKARKELFGDK >gi|256541427|gb|ACPV01000047.1| GENE 15 16211 - 17404 712 397 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 378 9 386 537 278 42 3e-74 MSKEMLEAFATLENTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMA VKTVVDEVQDDRLEVSLKDALTINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLRE AERKHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRV LVTHVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSN DPNIDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDD EEEKSALVIVPDYQLSLAIGKKGQNVRLAARLTSYKIDIRPESEVEFVDEKTNDTADAAD SSETSENVESTDDAADVESSDDTTTVEDSSKEDKTEE >gi|256541427|gb|ACPV01000047.1| GENE 16 17424 - 17900 521 158 aa, chain - ## HITS:1 COG:lin1358 KEGG:ns NR:ns ## COG: lin1358 COG0779 # Protein_GI_number: 16800426 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 158 1 155 155 133 47.0 1e-31 MSKVIDSVRPVVETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELV SEKLDALDPDPLPDPYVLELSSPGAERPIKTKADWEKALNDYIHVGLYQKIENKKMYEGT LKSYNDDEVVLEIKDKTRRKTLTVPRKLIANIRFAIEF >gi|256541427|gb|ACPV01000047.1| GENE 17 18011 - 22159 3686 1382 aa, chain - ## HITS:1 COG:BH2418 KEGG:ns NR:ns ## COG: BH2418 COG2176 # Protein_GI_number: 15614981 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Bacillus halodurans # 5 1382 62 1433 1433 1449 52.0 0 MYDTYVALRKAVEETFSSFVNVRFYVGTADGSDQYLPDYWHYVVQNSNILQPVAREFLAG QKPKKVDGRWVIPVDNNVIDGLIEQKALDDLAEEMRDYGFFNLKFITQLDQTSSKNNLES LQELQQEHEKSMQEVFEKTPDKPKPQQPKQYPTRRTNYGKRKLDENAPITQIKELEDGVR NVVIEGNIFNVETRELKSGAIIFSGEITDYSDSIAFKKFVSNKDEIEELSAIKPGTWAKM QGSVADDQYIHDVVFNISSLETVEHVGRTEKYEGEPKRVELHVHTNMSQVDATNTPTDFI KTAKKFGQKAIAITDHGDVQSFPEAYSSGKALDMKILYGVEANMIDDHALLVLNPAPMTY EDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDKFINPHHPLSEQTINLTSIT DEMVGAADDEAVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTLEV SRLLHPEQSRHTLDSLAKKYNVSLEHHHRANQDAEATGYLMFKLLDAFNKKYHENNLNNL NGYAAHGEVYKRARPSHMTVLAKDQAGLKNLYKLVSIASTKDFFRIPRTPKSDLARLHDG LLYGSGCWQGDVFIAMMQKGYDEAREKAKFYDYLEVQPPATYSQLIADGLIKDEDQLHEI IENIIKLGKELNKPVVATSDAHYVDQKDAIYRKILIAAQRSNPSRNKPQPDLHFYSTQEM LDAFSFLGEDVAKKIVIDNTNKIADELSEIQPIKDGLYPPHIEHADEEMKKLTYDKAYEL YGKPLPKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVGSRGSVGSSLVATM SGITEVNPLAPHYRCPNCKYSQFFENGEYGSGFDLPDKDCPKCGTPLVKDGQDIPFATFL GFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYGYAKHYDEEH DLKLRNAELDRLAAGVRGVKRTTGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITH YDFHSIHDNILKFDILGHDDPTMIRHLQDLSGIDPLTIPPDDPGVMSLFSSPDILGVTPE QIQSETGTLGVPEFGTRFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINQGIC KLKNVIGCRDNIMMDLIHWGVKPEVAFSTMESVRHGRGISDENMAILKKNKNIPDWYIPS CLKIKYMFPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKA AMKEIQDKGNDASAKDKSLMTVLEIANECLERGIKIKMVDIDQSEATDFKILDKHTILAP FNAVPGLGDNAAKQIVAARAEKKFLSKEDLAKRGKVSQTIMNYFEENGVLEGMPDENQLS LF >gi|256541427|gb|ACPV01000047.1| GENE 18 22327 - 24024 2040 565 aa, chain - ## HITS:1 COG:BS_proS KEGG:ns NR:ns ## COG: BS_proS COG0442 # Protein_GI_number: 16078720 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Bacillus subtilis # 1 563 1 564 564 589 51.0 1e-168 MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEGIIEQE MDKINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKNA YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEKGTYAANLEMAKSID TFKQEPEDAKQLTKVATPGCDTIEKLAKFLDVPATRIVKSILYIADDQKVLVLIRGDKQI NEVKLGHILDADEVHEANTADLKEITGSEKGGVGPVNADWADKIIADETVKNLYNVVVGA GETDYQFENANLDRDFKVDEFADIRTANEGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTK TMGADFLDQNGKAKPVIMGSYGIGVTRMLSAAVEQHLTERGVAWPKEIAPFAIHIVQMKM NKEDQTELAEKLEKKFSEKYDVLYDDRKERAGVKFADADLVGAPIRITIGKKAADGIVEV KRPTDDKATEMSIDELDKFVNQELG >gi|256541427|gb|ACPV01000047.1| GENE 19 24052 - 25308 1307 418 aa, chain - ## HITS:1 COG:lin1355 KEGG:ns NR:ns ## COG: lin1355 COG0750 # Protein_GI_number: 16800423 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Listeria innocua # 1 416 1 419 420 318 40.0 8e-87 MKGILIFIVVFGILVFVHEFGHFIVAKKSGILVREFSIGMGPKLFQIRRNPTTYTIRWLP LGGYVRLAGADDESKLDPGMTVVLQLNEQNEVVRIDASESEIPIEGIPVQVTKADLVDDL IIKGYENGDENDPVTYHVAHDATIIEKNGTELIIAPRDTQFNQANVWQKLATNFAGPFMN ILLGFVVFLIWTFTVPGPATTTVGSTQANSPARDAKIVTGDQIVAINGQKINNFDQVSQQ INQSKGKVLHFELKKNGQIRKVTVKPKAHKIQKQTVYQIGIVAKSNENAVVKLKRGWDTA ISTTGLIFRAVGNLFSHFSLNKLSGPVGIYSQTSQVSQMGFTYVLAFLGMISINLGIVNL IPIPGLDGGKLLLNLIELVRGKPISEEHEAIVELIGFGLLLVLIIAVTGNDIYRYFIK >gi|256541427|gb|ACPV01000047.1| GENE 20 25321 - 26136 700 271 aa, chain - ## HITS:1 COG:lin1353 KEGG:ns NR:ns ## COG: lin1353 COG0575 # Protein_GI_number: 16800421 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Listeria innocua # 1 263 1 256 262 205 48.0 1e-52 MKQRTITAIIALCLFIPIVLAGGLWMDWLTVLFAAVGISEIFLMKKQILVSFNFLLALLA TLTWTVPDSFFKVFPSNITKLGVFYGIIMLFLTWTVLSKNKTTFDDVGVYILAALYIGIG FHYMAAIRAYPQNGLALLGCVFVVVWSTDIGAYMIGRKIGKHKLWPVISPNKTWEGSIGA VVCALICSAIYMAILGSLGINFGVSELTMIILAFFLSIVGQMGDLVESAYKRFYGVKDSG KILPGHGGILDRFDSMLFVLPVVATILGIVH >gi|256541427|gb|ACPV01000047.1| GENE 21 26139 - 26873 643 244 aa, chain - ## HITS:1 COG:lin1352 KEGG:ns NR:ns ## COG: lin1352 COG0020 # Protein_GI_number: 16800420 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Listeria innocua # 10 237 26 250 252 277 57.0 2e-74 MSNKDNELNHLAIIMDGNGRWAKKRHRPRFVGHREGMDNVERITLAADKLGIKVLTLYAF STENWARPKEEVAYLMNLPVRFFDKYMPTLMENNVKVNIMGYLDELPEKTYRIVQRAMSE TANNTGLILNFAFNYGSRREITSAMQELGGMIEAGSLKSEEITEKMISDHLMTKNFGPYQ DPDLLIRTSGEQRISNFLLWQLAYSELAFSEKNWPDFDENDLKKFVEDYKHRNRRFGKVD ESDS >gi|256541427|gb|ACPV01000047.1| GENE 22 26876 - 27433 698 185 aa, chain - ## HITS:1 COG:L0367 KEGG:ns NR:ns ## COG: L0367 COG0233 # Protein_GI_number: 15673991 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Lactococcus lactis # 1 182 1 182 185 192 60.0 4e-49 MNNETIEKAKTKMTDSIKVYQKRLASIRAGVANAALLDNVQVEYYGAPTPLTQMSSITIP EPRVLLITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKF AEEAKIAVRNVRRDAMNTLKKDEKNGDITEDEQRNLEKQVQKVTDDAAKQIDQLADEKRK EITQG >gi|256541427|gb|ACPV01000047.1| GENE 23 27433 - 28158 1165 241 aa, chain - ## HITS:1 COG:L70624 KEGG:ns NR:ns ## COG: L70624 COG0528 # Protein_GI_number: 15673992 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Lactococcus lactis # 1 237 1 237 238 324 69.0 8e-89 MSQVKYKRVILKISGEALAGDKGTGINPTVIGHLAKEIKSVHDLGVEIGIVCGGGNMWRG ETGAKLGMERAQADYMGMLATIMNGLALQDGLEKIGVPTRMQTSIEMRQIAEPYIRRRAL RHLEKGRVVIFGGGTGNPYFSTDTTAALRAAEIGADVILMAKNGVDGVYSADPKTDPSAT KFSELTQLDLISKDLKVMDRTASSLSMDTEIPLIVFNVNTPGNIKKVVLGENIGTVIRGD K >gi|256541427|gb|ACPV01000047.1| GENE 24 28303 - 29328 461 341 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 336 1 275 283 182 36 4e-45 MAQITAKLVKELRERTGAGVMDAKKALVEVDGDMDKAVQYLRDKGMAKAAKKADRVAAEG LTGVYVNGNVAAITEVNSETDFVSQNDKFVNLVNEATKTIAEGKPADMEAAKELKMADGT TLDQSFVNATATIGEKIVLRRFALEEKNDDQEFGAYQHNGGQIGVITVLEGADAATAKHL AMHIAAMSPKVISPDELDDQFITDQLAVMNHKIDQDNESRALVHKKPLPHLVYGSAKQLT DDVLAKAKEDIKAELKEEGKPEKIWDRIIPGKMQRFIDDNTQVDKQFAVLSQDYIMDDSK TVGEFLKEKGAKLVAFQRYEVGEGIEKKQEDFAAEVREQMK >gi|256541427|gb|ACPV01000047.1| GENE 25 29362 - 30135 1318 257 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227878829|ref|ZP_03996736.1| ribosomal protein S2 [Lactobacillus crispatus JV-V01] # 1 257 1 257 257 512 100 1e-144 MADVVTMKQLLEAGVHFGHQTRRWNPKMAPYIFTQRNGIYIIDLQKTIKMLDDAYNFMKA VAQDGGVFLFVGTKKQAQDSIAEEATRAGQYYVNQRWLGGTLTNWSTMQSRIKRLKQLKQ MSEDGTFDVLPKKEVALLTKEMDKLEKFFGGIEDMPRIPDVLFVVDPKKEKIAVHEANIL GIPVVAMVDTNTDPDPIDVVIPSNDDAIRAIRLIAGAMADAVVEGQQGQDDESVEVDFKE NADGSEEIVSAEENPED >gi|256541427|gb|ACPV01000047.1| GENE 26 30300 - 31331 907 343 aa, chain - ## HITS:1 COG:BS_yabB KEGG:ns NR:ns ## COG: BS_yabB COG4123 # Protein_GI_number: 16077102 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Bacillus subtilis # 1 244 1 242 247 168 38.0 1e-41 MVDLKDNERIDYMYSDNLRIIQDKTAFSFSMDTLFLAYWAKDLIRDKDKVADLCAGNCAA TIYMAYFNRAHYDAIEIQNEVYSQAVRSVKLNEMENRISVFQDNVLNAGHFLRKDSYDVV TVNPPYFKAPKGHEVNPDRKKAIARHELLINLEQIIEVASGLLKMKGKMLMVHRPERLGE IAYYCMKHDLSIKMVQPFVPHRGEDANLIIVEAVKHTGTDGTVLKDAVEVHESNGDFTPL VQRISRETADDKAKHEAQGKYYFYVLLCNDGSFYGGFTNDLEHRLKMHNLGKGAKYTKTR RPVRMIYHEQFDDKRLALKREYWFKHHSRAWKEKFLHEHNIKF >gi|256541427|gb|ACPV01000047.1| GENE 27 31405 - 32019 553 204 aa, chain + ## HITS:1 COG:SP1624 KEGG:ns NR:ns ## COG: SP1624 COG0204 # Protein_GI_number: 15901460 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 194 1 196 249 187 44.0 1e-47 MFYKIIRPIVRFIVWVLNGHLHIHHKDRLPQGNYILVAPHRTWWEPLLFALGASPMEFMF MAKIELFKNPVLRFILDHAHAFPVDRNNPGPSALKIPVKGLREGKLSLIIFPSGTRHSAE LKGGVLLISKMSKKPMVPVVYQGPLTFKGLLKRKPLEVNFGDPITIDRKTKLTHENEQIL FQQLEDAWNKLDKEMDPNFHYVAK >gi|256541427|gb|ACPV01000047.1| GENE 28 32156 - 33310 1272 384 aa, chain + ## HITS:1 COG:CAC0877 KEGG:ns NR:ns ## COG: CAC0877 COG2230 # Protein_GI_number: 15894164 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cyclopropane fatty acid synthase and related methyltransferases # Organism: Clostridium acetobutylicum # 7 381 16 389 391 386 50.0 1e-107 MMLSKSFPFSVKVTYWDGKSEVYGNGDLEIEIVFNEKIPMSEITRNASLALGEGFMDKKI EIHGNIPKLLVGAYESADSFMRASKFRKFMPKQKHTEKQSEEDIQSHYDIGNDFYKMWLD PTMTYSCAHFEDGNKDDLEQAQIAKVHHILNKLHPQKGKTLLDIGCGWGTLMLTAAKEYG LKVTGVTLSEEQFKLVQKRIYDDNLQDVAKVRLQDYRELGDQKWDYITSVGMFEHVGKEN LPKYFADVYKYLNKDGVALIHGITRQQGGATNAWLNKYIFPGGYLPGLPEIVTDIIDSGL QITDMETLRRHYQRTLEIWDKNFNAVRPEVEKKFGERFCRMWDMYLNACAASFESGNIDV IQYLLTKGPSGKTLPMTRKYMLDK >gi|256541427|gb|ACPV01000047.1| GENE 29 33370 - 35313 1981 647 aa, chain - ## HITS:1 COG:SP1647 KEGG:ns NR:ns ## COG: SP1647 COG3590 # Protein_GI_number: 15901483 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Streptococcus pneumoniae TIGR4 # 24 647 5 630 630 452 39.0 1e-127 MKRYFTVRGGAGDVSKPDLNAKPQDNLYLAVNSEWLSKAEIPADKTSAGVNSELDQKIED RVMKDFADIAAGKEKMPEIKDFDKAVILYKIAKDFAKRDAEKANPIQKDLQKLISLNNFN DFKQKAADLFMGPYALPFVFDVDADMKNTDVNVLHFGGPSTFLPDTTTYQTADAKQLLDT LQDQSINLLTMSGIGKSEARVYVESALAFDQKLAKVVKSTEEWSDYAAIYNPVTYADFIK KFKSFDMADFMDSILPVKPDRIIVMEPRFLNHAEELLNEGNFAEIKGWMLVKYINSVAKL LSQDFREAAFPFGQAVTGTPQLPSQIKQAYRLANGAFDEVVGIFYGQKYFGAKAKKDVED MIQRMLKVYEERINANKWLSAETKKKAVIKLKALVLKIGYPDKIEEIFDLLQVDPKKSLY ENEAAMSTVRTKYMLNKLTKPVDRSVWLMPGNLNNACYDPQRNDLTFPAGILQAPFYDIN QSRGANYGGIGATIGHEVSHAFDNSGAKFDEHGNMNNWWTDKDFAEFNKRVGQMVDIFDG LQYGPAKINGKQVVGENIADLAGLACVVQTGENDGADLKDLFENYARSWMQKQRPEAIKT EVQTDVHAPQPTRVNIPVQCQNAFYDVFNVKPTDGMWLDPEERITIW >gi|256541427|gb|ACPV01000047.1| GENE 30 35408 - 37207 206 599 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 358 587 279 515 563 84 28 2e-15 MNNNEEQHESVWSKAIPFKEQVDIFKRLMGFVKQFKFEMIVALVGAFIVSVINILLPRGL QYFLDHFLLHQSTTVQVILFAGFLYALGSILKAIIQFTYQYFFALGSEKTLESVRRALYR KLHKLGMRYFDQTPAGSIVSRVTNDTMTLSNFLTVLSTFVIGAFSVITALVAMFTTNIVA GWLILLFIPILLLVVWLYSQKSSRLYRNYRERLSRINANLNESIEGVSVIQEFNQEKRMT NNFEGENGGLMNTRFNMIRVNSLLLSPLTSLLYSLALAISLMYFGFPLRETFVPAGVVYA FSQYISQLFNPISTVMDQMTFFQDGIVAGKRIFRILDDTQYEPQQDAQKGLTITKGKIEF KHVSFSYDGKHEILHDISFVVNPGETLGIVGHTGSGKSSIINVMMRFYEFGQGEILIDDV NIRKYPKEELRKKLGLVLQEPFMFYGDISSNIRLYNNQITDNQIKDAAKAVQADRFIERM PGKYHAKVIEGGEEFSQGQRQLISFARTLVTDPKILVLDEATANVDTETETLIQQGLKRL RKGRTTLAIAHRLSTIADADQIIVLDKGRIIERGTHDQLLAQKGYYYNLYTLQNNENKN >gi|256541427|gb|ACPV01000047.1| GENE 31 37200 - 38843 224 547 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 291 524 123 354 398 90 27 1e-17 MADQLDQGHISWGQYGMLIIAVVAAAFTLYILRYFWRKQIWGGAAELERQMRSKLFDHFM VMDRTFYQRHRTGDLMAHATNDVSAIQNVAGDGVLTLVDSLVMGLSTMIAMIIFVDWRLT IVALLPLPFLALGAWKLGDHLHDAFDKSQAAFSKLNNKTQESVSGIKVLKTFGQGKEDTA AFDKMVDETININKKVFVWDSLFDPLGTIIIGTTYVITIIYGGLLVTNKILSIGQLVSFI AYISNMVWPMFAIGYLFNILERGSASYDRVEKLLDERPLITDAHADPNITSQDLQGELKY DIKSFAYPDEPDIPVLKQVNFTLKPGQTLGLVGRVGAGKTTIIQLLLREFDQYDGQITLN GKDIRNIQLKVLLSQISYVPQNNFLFSTSIGKNIAFSSENVDKDDIAAAAKKSDLHDDVL QMPKGYETLVGENGLSLSGGQRQRMSIARALLKDSQILILDDALSAVDAKTETEILSSLR KERADKTTMIAAHRLTSVMDADLILVLKDGQIVERGNHQQLLAADGWYAEMWRRQELQAK VGEDTDE >gi|256541427|gb|ACPV01000047.1| GENE 32 39045 - 39263 316 72 aa, chain - ## HITS:1 COG:no KEGG:lhv_1362 NR:ns ## KEGG: lhv_1362 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 72 1 72 72 116 98.0 2e-25 MNLGLAIFLIIIALLIGAVAGFYGARAYMKKYFKENPPISEDMIVAMMSQMGQKPSNKKV HQVMNMMKHQQK >gi|256541427|gb|ACPV01000047.1| GENE 33 39330 - 39596 359 88 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01293 NR:ns ## KEGG: LCRIS_01293 # Name: not_defined # Def: hypothetical UPF0291 protein # Organism: L.crispatus # Pathway: not_defined # 1 88 1 88 88 95 98.0 7e-19 MDNKDAMSKEEEKKVTDRINELYHKKEKEGLTPEEEAERKELHKKFLANFRAAFKQDVEN MVILDKNGKEVTSERAKRAQRRKGLRKD >gi|256541427|gb|ACPV01000047.1| GENE 34 39753 - 40379 708 208 aa, chain + ## HITS:1 COG:lin1340 KEGG:ns NR:ns ## COG: lin1340 COG1974 # Protein_GI_number: 16800408 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Listeria innocua # 8 205 5 202 204 230 60.0 2e-60 MPRKTSDKKQLEILQYIYDTVEKRSIPPTVREICSAVGLSSTSTVHGHLARLERKGWLVK DATKPRALEITREGKKELGIKPKEIPVIGVVTAGQPILAVEDIDDYFPLPPDLKSDAGEL FMLKVHGESMINAGILNGDSVIVRKQSSANNGEIVVAMTEENEATVKRFYKEKDHYRLQP ENDTMAPIILPKVTILGKVVSLYRNNID >gi|256541427|gb|ACPV01000047.1| GENE 35 40418 - 41197 638 259 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01295 NR:ns ## KEGG: LCRIS_01295 # Name: not_defined # Def: acyl-CoA thioesterase # Organism: L.crispatus # Pathway: not_defined # 1 259 1 259 259 523 99.0 1e-147 MSNETFLIPIRQNNDLSDIALNELRMDLDEHALHQRYYTDIAYLAGNSRKYSLNSVQTVA SPLIGKKILFLGSSVTFGFGALGESFVDYLWKRDGVAAIKDAENGTTLVDEDTYKPNDSY VARFREELTESQPDVFVLQLSTNDANQNKKLGKITNQNFDTKTITGALEYMISTAQARWK CPILIYTNPYFANPLYKQMVERVHELAQKCHVEILDLYDHPDFQHQDALYMADEIHPTRA GYLKKWLPLFEEKITEILA >gi|256541427|gb|ACPV01000047.1| GENE 36 41190 - 41849 599 219 aa, chain - ## HITS:1 COG:CAC0219 KEGG:ns NR:ns ## COG: CAC0219 COG1573 # Protein_GI_number: 15893511 # Func_class: L Replication, recombination and repair # Function: Uracil-DNA glycosylase # Organism: Clostridium acetobutylicum # 1 213 4 197 199 94 34.0 2e-19 MDYPKKLIDEVKERSKGMQLEGINSGSGPQHPLLMIVGEAPGRNEIVNNIPFSGDAGKEL DKSLKQIGLTRDQVYITSAVRSRPFAIKKVFSKRENKEVIKYPNRKPTKKEILAHAHFLD FEIDYAQPKLIVALGNTGLERLLGSGHKISAEHGQVIKNTPILRLNETKDGYIWSKERYT IFPEYHPAAVFYNRKLTDDIIKDWDKIKPYVEKEKSENE >gi|256541427|gb|ACPV01000047.1| GENE 37 42199 - 43323 966 374 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01297 NR:ns ## KEGG: LCRIS_01297 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 374 1 374 374 657 99.0 0 MKFNCKFALVAATVLTVAPILSFPNITTTVQATTKKAQAAKNTIQVNKAPIIYDRAGNYN SKYHQNIKAGTHLKYSGKTYIIQQRFAAGIPVPTSRIIGGKLYYSIGKGGYVKESDVLTW LGNTNTVKLHFRHKKNYIYDKNGKKLVSYNGGKNYFTNKQKPKIEVPYYNSPKQLFNIGK GGYIDASQVTTLNGKGTVFLNNNAPIYDATGKQFKNKNLKQGTVLNYYGKPKKAAANTQF YYYQNKTKMTLPAIQQGDHTYFQISKTQYINAADVALVDGKTLWDKGPVSVSLINDAYAY TAKFKQNKKVLYRAGAKLTVDRTKIEGEKSPQLYLHVKGTKNYLYLGNEKDYGASPLDYR HGSTNLILQTLLHN >gi|256541427|gb|ACPV01000047.1| GENE 38 43436 - 43813 633 125 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227878845|ref|ZP_03996752.1| 50S ribosomal protein L19 [Lactobacillus crispatus JV-V01] # 1 125 1 125 125 248 100 5e-65 MNAEEGEKYIMDPLIQELTKEQLRDDIPAFRAGDTVTVHVRVVEGTHERIQLFEGVVIKK KGTGIGATYTVRKIASGVGVERTFPVNDPRVAKVEVKRHGRVRRAKLYYLRERHGKSARI AEARR >gi|256541427|gb|ACPV01000047.1| GENE 39 43897 - 44616 803 239 aa, chain - ## HITS:1 COG:BS_trmD KEGG:ns NR:ns ## COG: BS_trmD COG0336 # Protein_GI_number: 16078666 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Bacillus subtilis # 1 237 1 243 243 257 52.0 1e-68 MKINVLTLFPDMFAPLQVSMLGRGLEDKKWELNLVNFRNFTTDVHHHVDDTPYGGGAGMV LQIMPIKKALDSLPSTGKVIITAPQGKTFNEKIAQSWAKEDELTFICGHYEGFDQRVYDL ADETVSIGDYVLTGGELPTMSMIDATVRLLPGILGNAASPVEESFSHGLLEYPQYTRPAD FEGQKVPEILTSGNHQKIAQWRHKEALRTTYLHRPDLLKERVLTTEEKKMLADIKAELD >gi|256541427|gb|ACPV01000047.1| GENE 40 44606 - 45121 168 171 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 [alpha proteobacterium BAL199] # 13 170 14 168 179 69 29 4e-11 MEYYDVARILTTHGLNGEVKVSIITDFPEDRFAIGMHLAIKGETSQVLTVAKSRPFKQFW LVQFAEITDIDQAEKLKGKILVVSEADRGELPEGVYYYKDIFDCDVIDEESGKRLGKITD IESPGANDIWLVHEDNGKEYWIPNIASVVKKVDVANKKVYVELLEGLRDED >gi|256541427|gb|ACPV01000047.1| GENE 41 45188 - 45460 467 90 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|58337565|ref|YP_194150.1| 30S ribosomal protein S16 [Lactobacillus acidophilus NCFM] # 1 90 1 90 90 184 100 9e-46 MSVKIRMHRAGAKRKPFYRIVVADSRMPRDGRFIEQVGYYNPVSQPKELKLDEDKIFEWL QKGAQPSDTVRSLLSGAGLMAKLHDAKYNK >gi|256541427|gb|ACPV01000047.1| GENE 42 45548 - 46978 1599 476 aa, chain - ## HITS:1 COG:SP1287 KEGG:ns NR:ns ## COG: SP1287 COG0541 # Protein_GI_number: 15901147 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 445 1 445 523 523 62.0 1e-148 MAFENLSERIQKALKNLTGKGKVSEEDINKASREIRLALLEADVNFKVVKDFIKTIKKEA LGKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKSKHIPTIIMMVGLQGTGKTTTVGK LAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGDQLKVPVYSEDGEKDVAKIVQDGLAEA EKNKNDYVLIDTAGRLEIDEPLMEELERVKKVTHPDNILLVVDAMTGQAATDVAKGFDER LDVTGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLSDLDVFHPDRMASRILGMGD MLSLIEKAQQDYDAKEAEKVAEKMRENTFDFNDFVDQLQQVQKMGPLDQIMKMIPGLANN PQLKNLNVDQKQIDHTEAIVYSMTPEERENPDMLNPSRRRRIAAGSGRPVVEVNRMIKQF KQMRDMMSKMSKGNMKGLSNLPGMDSPMAKMAMRRMNKNFKKNKKKRLRKVKRFHS >gi|256541427|gb|ACPV01000047.1| GENE 43 46982 - 47323 326 113 aa, chain - ## HITS:1 COG:SPy1201 KEGG:ns NR:ns ## COG: SPy1201 COG2739 # Protein_GI_number: 15675166 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 3 76 5 78 113 68 52.0 4e-12 MDELTKNEELGDLYAYYGSLLTQGQQSYFEDYYYNDLSLGEIAANHQVSRQAVYDNLKRS SKILQNYEEKLHMKRDNNQVEDVLADTLLSLDNGDSEAAKKEITNLLNQLRGE >gi|256541427|gb|ACPV01000047.1| GENE 44 47515 - 48927 1685 470 aa, chain + ## HITS:1 COG:SA2396 KEGG:ns NR:ns ## COG: SA2396 COG0531 # Protein_GI_number: 15928189 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 4 466 11 473 482 595 69.0 1e-170 MNSKEDPRVYENKDGHLVRSLKVKDFLALGVGTIVSASIFTLPGEVAAKHTGPAVAISFI LAAIAAGLVAFAYAEMAAAMPFAGSAYSWINVVLGEFWGWVAGWALLAEYFIALAFVGSG LSANFRALIAPLGWKLPASLSNAFGNNGGIIDIISLVSILLVALLIGHGVSRAARVENAL VVLKVLAILLFIAVGVFAIKKVNFTPFIPKYKMTANGPFGGWQGIYAGVSMIFLSYIGFD SIAANSAEAINPQKTMPRSILGSLAIAVTLFVGVSLVLIGIMPYQKYANSAEPVGLALRF AGHPIVAIIVQTIAVLGMFTALIGMSMAGSRLIYSFGRDGMLPKWLGKLNADRRPNNALW TLTIVAILLGAFFPFSMLSQLVSAGTLIAFMFVSLGIYKLRPREGKDIDDPSFKMPFYPV LPALGFMAALIVFLGLDYQAKFYAGIWFILGLIIYFSYGVRHSILNKQNK Prediction of potential genes in microbial genomes Time: Wed May 25 05:19:59 2011 Seq name: gi|256541426|gb|ACPV01000048.1| Lactobacillus crispatus 125-2-CHN cont1.48, whole genome shotgun sequence Length of sequence - 2654 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 36/0.000 - CDS 3 - 1818 1248 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 2 1 Op 2 . - CDS 1833 - 2579 283 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) Predicted protein(s) >gi|256541426|gb|ACPV01000048.1| GENE 1 3 - 1818 1248 605 aa, chain - ## HITS:1 COG:lin2220 KEGG:ns NR:ns ## COG: lin2220 COG0577 # Protein_GI_number: 16801285 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Listeria innocua # 2 605 3 642 646 142 21.0 1e-33 MLWKLSLTGLKSRFKDYAVLFSGLTLAAAIFYMFMTIAINPAFLKGSMAIAFSITQMVFI FGIALLAIITLVYIVYANSFLLSMRKKDYGTYMILGARNSKIGRLIFTETVVIGLLATAL GILIGIGLTQVVSQLLISQLGLQLHKFLGFYLPAILWTVVFFVVLFFLAAIWNRHKLVST SVIKLLHEDQKPVKLRNNRIWKATEVILGLALLAIGYWAMWDYHQLQIKSVEIGFVTILA GSYFVFDSVFTTVINALRKNKKFKYSKLHSFTLGQLKFRLGDYNRVLTVISLLFALALGA ITVGLNFNNMTETALQATYYDAVLYKRDAKVNQQLKKVAVRKQTTLNYKVNGKKKFPVLY VTDQEIAKKKIKFQSGRKNGDQMNWKTKTITVAGVKNKKQEMNFQLASLTPYSDYEVKVV TPAEYVKIPGKNKQVTLLLINNFRSNFNNIEKLQKMSLDQTVTKDAQGVYVSLNNSKSAQ YRLVASVASGFEFMGFFLGLAFLAMLASTLMFKVLSGANSDRPRYEMLWKVGSRRKLLKS SIKAEIGTLFALPAVLGVIDVLFGLQFFKGILANPYDKIWIPFTIFLVLYLLYYLITVKL YEGIV >gi|256541426|gb|ACPV01000048.1| GENE 2 1833 - 2579 283 248 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 223 1 219 223 113 31 1e-25 MSEILRVDQVTKTYGKKGEKQYQALKGISFAIEQGEFVGIMGASGSGKTTLLNILSTLDK PTSGHVLVNKQDITALKNNQMADFRGKEIGFIFQDFNLLDNLTNRENIALPLSLQGVKAK DIDGKAMAIAKRLGIESILDKYPAEISGGQKQRVASARALVHNPAILYGDEPTGALDSQS ATELLKTMADLNKNDQVSILMVTHDPYSASYAQRILFIKDGKIGKEIKKENKTREEFYQD IIAELGRR Prediction of potential genes in microbial genomes Time: Wed May 25 05:20:15 2011 Seq name: gi|256541425|gb|ACPV01000049.1| Lactobacillus crispatus 125-2-CHN cont1.49, whole genome shotgun sequence Length of sequence - 44529 bp Number of predicted genes - 43, with homology - 43 Number of transcription units - 14, operones - 9 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 9 - 51 7.2 1 1 Tu 1 . - CDS 64 - 312 205 ## LBA1293 putative transcriptional regulator - Prom 397 - 456 5.1 - Term 443 - 473 -1.0 2 2 Op 1 . - CDS 485 - 1906 1891 ## COG4690 Dipeptidase 3 2 Op 2 10/0.000 - CDS 1951 - 3198 1421 ## COG0552 Signal recognition particle GTPase 4 2 Op 3 6/0.000 - CDS 3199 - 6768 3712 ## COG1196 Chromosome segregation ATPases 5 2 Op 4 . - CDS 6781 - 7470 636 ## COG0571 dsRNA-specific ribonuclease - Prom 7490 - 7549 6.3 - Term 7515 - 7553 6.3 6 3 Tu 1 3/1.000 - CDS 7577 - 9346 2275 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 9477 - 9536 11.1 - Term 9408 - 9463 6.7 7 4 Tu 1 5/1.000 - CDS 9545 - 11299 1897 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 11401 - 11460 7.5 - Term 11448 - 11493 0.1 8 5 Op 1 49/0.000 - CDS 11511 - 12440 1144 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 9 5 Op 2 6/0.000 - CDS 12455 - 13414 1170 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 10 5 Op 3 44/0.000 - CDS 13417 - 14403 736 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 11 5 Op 4 . - CDS 14407 - 15423 930 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component - Prom 15480 - 15539 9.6 - Term 15489 - 15528 3.1 12 6 Op 1 3/1.000 - CDS 15542 - 15784 397 ## COG0236 Acyl carrier protein 13 6 Op 2 . - CDS 15815 - 16816 1249 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 14 6 Op 3 4/1.000 - CDS 16836 - 18872 1854 ## COG1200 RecG-like helicase 15 6 Op 4 9/0.000 - CDS 18875 - 20536 2054 ## COG1461 Predicted kinase related to dihydroxyacetone kinase 16 6 Op 5 . - CDS 20558 - 20920 540 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 20953 - 21012 7.6 + Prom 20944 - 21003 7.4 17 7 Tu 1 . + CDS 21088 - 21273 316 ## PROTEIN SUPPORTED gi|227878875|ref|ZP_03996780.1| ribosomal protein L28 + Term 21282 - 21324 4.9 - Term 21335 - 21382 7.2 18 8 Tu 1 . - CDS 21390 - 21599 301 ## LBA1313 hypothetical protein 19 9 Op 1 6/0.000 - CDS 21735 - 22409 587 ## COG1564 Thiamine pyrophosphokinase 20 9 Op 2 10/0.000 - CDS 22409 - 23059 728 ## COG0036 Pentose-5-phosphate-3-epimerase 21 9 Op 3 7/0.000 - CDS 23072 - 23962 607 ## COG1162 Predicted GTPases 22 9 Op 4 17/0.000 - CDS 23963 - 25993 1791 ## COG0515 Serine/threonine protein kinase 23 9 Op 5 3/1.000 - CDS 25983 - 26789 642 ## COG0631 Serine/threonine protein phosphatase 24 9 Op 6 20/0.000 - CDS 26743 - 28104 1081 ## COG0144 tRNA and rRNA cytosine-C5-methylases 25 9 Op 7 4/1.000 - CDS 28055 - 28981 998 ## COG0223 Methionyl-tRNA formyltransferase 26 9 Op 8 3/1.000 - CDS 29012 - 31411 1666 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase - Term 31418 - 31455 7.1 27 10 Op 1 25/0.000 - CDS 31462 - 31686 389 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 28 10 Op 2 . - CDS 31692 - 32306 596 ## COG0194 Guanylate kinase - Prom 32330 - 32389 5.3 - Term 32374 - 32409 1.0 29 11 Op 1 . - CDS 32414 - 32851 394 ## COG4405 Uncharacterized protein conserved in bacteria 30 11 Op 2 . - CDS 32844 - 34526 1884 ## COG0497 ATPase involved in DNA repair 31 11 Op 3 3/1.000 - CDS 34537 - 35349 675 ## COG1189 Predicted rRNA methylase 32 11 Op 4 . - CDS 35350 - 36219 981 ## COG0142 Geranylgeranyl pyrophosphate synthase 33 11 Op 5 . - CDS 36222 - 36464 300 ## LCRIS_01339 exodeoxyribonuclease VII, small subunit 34 11 Op 6 7/0.000 - CDS 36445 - 37812 881 ## COG1570 Exonuclease VII, large subunit 35 11 Op 7 4/1.000 - CDS 37799 - 38650 752 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase - Term 38663 - 38702 6.8 36 12 Op 1 10/0.000 - CDS 38707 - 39102 525 ## COG0781 Transcription termination factor 37 12 Op 2 4/1.000 - CDS 39102 - 39533 489 ## COG1302 Uncharacterized protein conserved in bacteria 38 12 Op 3 10/0.000 - CDS 39552 - 40121 839 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) - Prom 40141 - 40200 6.9 39 12 Op 4 . - CDS 40202 - 41311 1210 ## COG0006 Xaa-Pro aminopeptidase - Prom 41339 - 41398 8.9 - Term 41367 - 41412 2.0 40 13 Op 1 32/0.000 - CDS 41428 - 41724 513 ## PROTEIN SUPPORTED gi|227878898|ref|ZP_03996803.1| ribosomal protein L27 41 13 Op 2 . - CDS 41737 - 42048 525 ## PROTEIN SUPPORTED gi|161507744|ref|YP_001577705.1| 50S ribosomal protein L21 42 14 Op 1 . - CDS 42207 - 43043 795 ## COG1284 Uncharacterized conserved protein - Prom 43066 - 43125 4.6 43 14 Op 2 . - CDS 43127 - 44503 1509 ## LCRIS_01349 V-type sodium ATP synthase subunit Predicted protein(s) >gi|256541425|gb|ACPV01000049.1| GENE 1 64 - 312 205 82 aa, chain - ## HITS:1 COG:no KEGG:LBA1293 NR:ns ## KEGG: LBA1293 # Name: not_defined # Def: putative transcriptional regulator # Organism: L.acidophilus # Pathway: not_defined # 2 79 38 132 135 84 65.0 1e-15 MLIELNHHQHGKTFEKLAKELHVTNDKVKSLTKKLAAKDLCKKFEKHRAETDQTITGMLS KDETLGLVNVLKKMLKSSEDNK >gi|256541425|gb|ACPV01000049.1| GENE 2 485 - 1906 1891 473 aa, chain - ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 6 471 10 474 474 368 41.0 1e-101 MKEYSACTTILVGKNASIDGTTMIARNDDTFRPITPQKFIIEPARHGEKKHIKSWLNKFE MDLPEDAQRVPAVPNVDYKHRGYYDESGINQENVAMSCTESTYGNERTLAFDPLVKDGLD EDCMQTSVLPYIHSARDGVQYLGKLIAKYGSPAGNSVLFSDKDEIWYMEIVTGHHWVAER IPDDCYAATGNRVAIEQVDFDNPDYFMWSKGIQEFVEEHHLNPDHEGWNFRHIFGTYTEQ DRHYNTNRQWYIQKLFNPEIEQNPQDGDIPFIRKAAKKITKEDIQFALGSHYQDTPYDPF GKGTDEEKHRYRPIGLNRTQNAHILQIRSDVPADRAAIMWLCIGGPTFTPFVPFFANMND TDPSYNNTSMDYNMNDAWWYYKSFAAIVESHYPQFVQLDTTYLTELNRYFRGRVEEIIAG AEGKSGDELTEYLTKENQKTVAHTRKETEKLWGQMMIESINMSKLTFNMDENL >gi|256541425|gb|ACPV01000049.1| GENE 3 1951 - 3198 1421 415 aa, chain - ## HITS:1 COG:SP1244 KEGG:ns NR:ns ## COG: SP1244 COG0552 # Protein_GI_number: 15901105 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 415 1 429 429 333 52.0 3e-91 MGLFDRIKKSLFGKKDEEDENKKEEKQTEQENEAKPESEDNDQESEKVVDEAKSKTETTD EEEQTVEAQEDSEVEAESGDEEKAVDLDSKQQPEEVKVEETTETETEEQLYEKGLEKTNK GFGARLNAFFAKFRTVDEDFFDDLEDLLIESDVGYETAEQLTDELREEAKLQNAKSRDEL KRVIVEKLVDLYDKGGNSEDEQLTYNAEAKPNVYLLVGVNGAGKTTTIGKLAKRFKDEGK SVILAAADTFRAGAVEQLVEWGKRVDVPVVTGKEKADPASVVYDATERAIREKADYLLVD TAGRLQNKKNLMAELEKIQRTIKKLLPDQPTETLLVLDGSTGQNALLQAKDFDKTTELTG LVLTKLDGSSKGGVVLAIRNEMNLPVKLVGLGERAEDLADFDAANYAIGLFHGLV >gi|256541425|gb|ACPV01000049.1| GENE 4 3199 - 6768 3712 1189 aa, chain - ## HITS:1 COG:lin1918 KEGG:ns NR:ns ## COG: lin1918 COG1196 # Protein_GI_number: 16800984 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Listeria innocua # 1 1181 1 1180 1186 620 37.0 1e-177 MPLTELVLDGFKSFADKTTIHFDDGITGIVGPNGSGKSNITEAVRWVMGESSAKSLRGTN MKDVIFAGSQFRKPLNKAEVTLVFDNKKRELAFNSDQVSITRRILRSGDSEFLINNQQVR MRDVRTLFLDSGISPNSLAIISQGRVDQILNSRPEQRRVIFEEAAGVLHFKQQKEAAKAQ MEKTKDNLIRINDLVKELEGRLEPLHEQSSLAKEYQFQKKGLDQKLKSLLAFEIEDLNRQ KEEVQKAADRNRILLTKLDNEVKGSQSAVSEKRAEYQKIQNEREQTQSELLKLSDQLSQI NTNLQVAQQSQQFNNSTRVETQRQVEELKNSLVKLKDELSELQRNKKQLKQEQDALQEQH DQLTGKLHDDPEELSKRLEDCRNDYIQLLQDQATTNNQIVNLNTELKRSQADTTYQNSDV SKQLTDARTELEKLRTEGKQLTVKRQKEKEKFAQVNDQNNDLTKQINQIRQAVNAERSKL EKVEARHEALVNIQKRHEGYYYGVRNVLNHLSDFPGVIGAVGELITFPVELEAAMTTALG GGVQDLITESRVSARDAINQLKRSRSGRATFLPLDGLRQYTIPQSTITTLQSFSGFKGVA SDLVESKADQDITAAINYLLGSVIIVDTIDSAMSISRRVNRYRIVTLDGDVISPGGSMTG GQRNQRNNSPLQTATEINQLEKQLQTLRQNLAEDQERLDELVTQGEKVAAKLQQLRDTLQ ETNQAINEAAISFQNQEKEVKRLTDANSLYKSRVKEQQDRIAALKKEITQANDQQEQLAK QNEVQKGKMNDLQEKIKNFNSLSQRVQEELSKLDPQIAVYTNKLENLASQEKEKNIQITN NQKQTDSLEQKLTELSQNGELSVKKNSDLQTQKAEIKQKNETLQKKLNELSAQLGQVDAQ INQLDQVASRNYDLRKDAAIEQEDYSVKIAKFNSAIDQRLSTLSEEYALTFEAALEQAEG ENTEEKRNELAKSVKLHHMSIEDIGQVNLDSIQEYEDVKKRYDFLNGQQNDLLKARDDLE KSMNELDEEVKTRFKSTFNQVASSFKSIFPVVFGGGKARLELTEPNNLLETGIEIIAQPP GKKQQRLSLLSGGERALTAITLLFAMLQVNPVPFCVLDEVEAALDDANVTRFAQFLLKYD MKTQFIVITHRRGTMRQADQLYGVVMQESGVSQVLSVSLKEMKNKNEVK >gi|256541425|gb|ACPV01000049.1| GENE 5 6781 - 7470 636 229 aa, chain - ## HITS:1 COG:SPy0531 KEGG:ns NR:ns ## COG: SPy0531 COG0571 # Protein_GI_number: 15674631 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Streptococcus pyogenes M1 GAS # 10 229 8 229 230 199 51.0 2e-51 MVSTKFLKKLKDDYNIEFNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAV SNYVYLHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLL EDVFEAFNGALFLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIE YTVISESQLPSHFVVELKINGKVESKGEGHNKKAAEQQAAKFALQKLEK >gi|256541425|gb|ACPV01000049.1| GENE 6 7577 - 9346 2275 589 aa, chain - ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 1 569 1 579 600 377 40.0 1e-104 MKKAKLFAGITLLSGVALTLAACGKSESHSDESKTASKFKEAVPTKATKNGGTVKVAVEA DTPFTGIFNDELSTSATDTEVMQYGAESLFGTDDHYVFNDKGAATIKVDQKAKTVTVEIK KGVKWSDGKQVTAKDYEYAYEIIANKDTKSQRYTSSLADLEGLQEYHEGKSKTISGFEMP DGENGRKAVLHFKTMKPGMNTSGNGYIWEAAAPYHYLKDVKFKDLMSSDKIRKKPLFFGA YKLQKVVRGQSVTWVPNEYYYKGKPKLSKITATVINPNSVAQSIKSRKFDVTQVINSQWK NIKDTKGVNFIAKIPLQYSYLGFKVGKWDAKKGENVMDKNSKMNNKALRQAIGYGMNVNQ VYKRYSFGLSFRIPTLIPKQFGDYFDKNIKGYTYNIKKGNEILDKAGYKKKGTYRVQPNG KPLTIHLAAMTGSSTAEPIVQNYIQQWKKMGLNVKLTSGRLIEFNSFYDKVQNDDPSVDM FIGAWSLSSEPSPNDLYSEKASMNYSRFVTHENTKLLDEMDSQKAFNHKYRVKKFHEWQK YMFDEAYVIPIANSYSITAVNKKLTGYSLKPSDSMGNGFPNWYNVAYAK >gi|256541425|gb|ACPV01000049.1| GENE 7 9545 - 11299 1897 584 aa, chain - ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 2 581 3 591 600 385 41.0 1e-106 MKLSKVLGSVGVVSAAALALVACGKSGNSNNAGATDAKKFKQTTPVKEVKKGGTLSYAIE ADTPFTGVFNNELSTSQTDSDVAQFGNEALFDTDDSYRINSKGPATFKLDRKAKTISIEV KKGVKWSDGKQVTAKDVEYEYEIMANKGSKSERYTASLQNIVGMTEYHDGKSKTISGIDM PDGENGRKVVIHFKEMKPGMLQSGNGYFLETASPYHQLKSIPFNKLESSDAVRKNPLFFG PYKISKIVRGQSVTWVPNKYYWRGTPKLDKITVSVVNPNSASQAIKSHKFDIARVVNSQW QQVKNTKGVNFVAKVPLQYSYMGFKVGKWENGKNVMNPKAKMNNKSLRQAMAYAMNIDAV EKRYTQGLTFRVPTLIPEQFGNYFDKNIKGYNYNLKKANKLLDDAGYKKKGKYRVQPNGK PLTIHLAAMSGSSTAEPITQNYIQQWKKIGLNVKLTTGRLIEFNSFCDKVQHDSKDVDVF MAGWSLSSEPSPNDLYNEKAPFNYTRFVTKKNTQLLKDIDSQKAFNNKYRVQKFHEWQKY MFDEAYVVPTVNAYQIDAVNSKLTGYSLKPSDANSVWYNVGYAK >gi|256541425|gb|ACPV01000049.1| GENE 8 11511 - 12440 1144 309 aa, chain - ## HITS:1 COG:BH3637 KEGG:ns NR:ns ## COG: BH3637 COG1173 # Protein_GI_number: 15616199 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 25 307 19 300 302 262 49.0 5e-70 MADKKEKATKKATKEDAKQKATLPPSGFKVAMHEIVRSKSALTALIIIIVILLFTFGGSL FLNRAQVTEMNIADSYYGWGEAGHLLGTDDGGRDILKLLIMGGRNSIMIGISVTAITEIV GLVVGLVSGYFGGAIDSVIMRIVDFIQILPQMPIIIVLTTVIPNYNAVTLVFLIAMFGWT VTARYFRSFVLSQRGRDYVLASKTSGSSNFKIMFREVLPNITSMIIIDVVLSIAGNIGIE TSLSFLNYGLPSTTPSLGTLIGFASDPVNVINRPWLWLPATILLLVISLSINYVGQALQR AGDARQREN >gi|256541425|gb|ACPV01000049.1| GENE 9 12455 - 13414 1170 319 aa, chain - ## HITS:1 COG:L91252 KEGG:ns NR:ns ## COG: L91252 COG0601 # Protein_GI_number: 15673821 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Lactococcus lactis # 1 319 1 319 319 346 57.0 3e-95 MWKTILRRLLIMIPQLIILSLLVFLLAKMMPGDPFSGSINPNTDPKQIEALKRAAGLFDP WYVQYFRWVGNLFHGDLGTSYIQHVPVTSLIADRANNTFWLSLLTTILTYSIAIPLGITS GRHQDEWQDTSVRIFNYITLATPGFVFYILGLWLFGFTLGWFPISGSVSASASGFWGVLG SRIYHMILPAILYALITTTGTVQYLRTGIVDNKVEDYVRTARSKGVPENVVFNKHILRNS LLPIAAFLGNTITGLLSGSMIIESVFSYPGMGKLFLDSIGQRDYTTLTALILIFGILTLI GNLLSDIIMSIIDPRIRIQ >gi|256541425|gb|ACPV01000049.1| GENE 10 13417 - 14403 736 328 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 2 269 8 275 329 288 50 5e-77 MAKEIIQIKDLKVYYPIRSGFWNRITDYVRAVDGINFSIGEGETYGLIGESGSGKSTTGK AIVGVEKVTSGQIMYKGLDVTKASNRKKLDYNKDVQMIFQDSMSSLNPRKRIEDIIAEPI RNFENLTTDQERDRVQELLDIVGMPSDAIYKYPHEFSGGQRQRIGVARAVATNPKLIVAD EPTSALDLSVQAQVLNFMKHIQQQYNIAYLFISHDLGVVKHMSENLAIMHRGRLVELGSR EEIYKHPIHIYTKRLLSAIPQVDVEHREEHKKHREQVEKEFEENQSKWYDKDGRVYPLQQ VAPKHWVALPKDMAHEAKLEELEEKESD >gi|256541425|gb|ACPV01000049.1| GENE 11 14407 - 15423 930 338 aa, chain - ## HITS:1 COG:BH3640 KEGG:ns NR:ns ## COG: BH3640 COG0444 # Protein_GI_number: 15616202 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Bacillus halodurans # 8 329 6 327 340 418 61.0 1e-117 MEKQSDLLLDIQHLHTAYRLQGKFYDAADDVNLTLKRDEILAIVGESGCGKSTIASSIIG LYDHKNTKVTGDILYNELNLVGLNESLFNKIRGDKIGMIFQDPLASLNPLMRVGDQVAET LYYHTDMDEKARHARVIELFNQVGMPKPEEMYEMYPHELSGGLRQRVVIAMAIACKPEVI IADEPTTALDVTIQAQILDLLEDIQKQSHSGIILITHDLGVVAETADEVAVMYAGQIVEK SDVKTIFENPLHPYTRSLLNSMPQSDDTDEDLHVIHGTVPSLKNMPRTGDRFAARIPWIP ASAHEEEPKVHEVAPGHWVRCTCWKSFHFEDEKTASGE >gi|256541425|gb|ACPV01000049.1| GENE 12 15542 - 15784 397 80 aa, chain - ## HITS:1 COG:DR1942 KEGG:ns NR:ns ## COG: DR1942 COG0236 # Protein_GI_number: 15806940 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Deinococcus radiodurans # 7 79 38 110 110 70 47.0 1e-12 MSEEEIFNKIKDMIADNFDVDKDKITEDTNFMNDLDADSIDLVEFILQLEDEFGAEIPDD EAEKIKTIGDAVSYIKSHQG >gi|256541425|gb|ACPV01000049.1| GENE 13 15815 - 16816 1249 333 aa, chain - ## HITS:1 COG:SP0037 KEGG:ns NR:ns ## COG: SP0037 COG0416 # Protein_GI_number: 15899983 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Streptococcus pneumoniae TIGR4 # 1 331 1 328 330 306 50.0 4e-83 MRTIAIDAMGGENAPDAIVKAVLQAKTGMPETKFLLFGDKEALRKLIPEDQINDQLGVVP TTEVIADEDEPVKAIRKKKDSSMVVAANFVKEGKADALLSLGNTGALLACGIFIIGRIKG IVRPGLMPTLPVQNSDDGFNMVDVGANAKSKPEYLLQWAEMASYYAEKIRGIKNPRVMLL NNGAESDKGDDVHQKAYELLKESNLNFLGNIEGNELLLGKADVVVTDGFTGNAVLKNIEG TSSVLLHLLKDSLLNGGVMTKLGALMVKGSLTSLKSKFDTAKYGGAVLLGVNAPVVKTHG RSNERPIYFTLKQVDKMVKEKLVADFRDEFAEK >gi|256541425|gb|ACPV01000049.1| GENE 14 16836 - 18872 1854 678 aa, chain - ## HITS:1 COG:SP1697 KEGG:ns NR:ns ## COG: SP1697 COG1200 # Protein_GI_number: 15901531 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Streptococcus pneumoniae TIGR4 # 6 672 3 668 671 603 48.0 1e-172 MIDNALFAPVTDLKGVGTKTTAALGSLGIYSIYDLLFYFPFRYDELQTLPLDQIMDGQKV MLKGIVATEAFVSRFGYKKTRLSFKMRIDHDVIMVNFFNQPWLKNKIDIGQEVAIYGKYN VARQSLTAFKFVAAKENDSGMAPIYPVNRHVKQKKLVDLINVAIDDFIDQVQDIVPEKLR QEYRLLKDQVIIEKMHHPKNSHEAELAKRSAIFREFFIFELQLALLTRNDGKQMGYAKKY DLTEIAQLTKSLPFELSDDQKHVVNEIFADMHSDSQMRRLLQGDVGSGKTVVAVYAIFAA ITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTKTLERREIYRELTDGTIN VVIGTHALIQDSVIFKKLGLVIIDEQHRFGVGQRQALINKGDQPDILAMTATPIPRTLAL TVYGDMTVSEIHHLPAGRKSIISTWKTSSQMKEVYRQMQEQLNQGFQIYAVTPLITESET LDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFAAGEIDILVTTSVIEVGVD VANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCVFLADPKTDSGKARMKIIASTNDG FKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYNTLVVAQKEARALVAADPDLLDPG HKALKQVLEYKQLEQNRI >gi|256541425|gb|ACPV01000049.1| GENE 15 18875 - 20536 2054 553 aa, chain - ## HITS:1 COG:SPy1885 KEGG:ns NR:ns ## COG: SPy1885 COG1461 # Protein_GI_number: 15675702 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Streptococcus pyogenes M1 GAS # 3 553 1 554 554 561 55.0 1e-159 MVLNEIDSKQFRDMVRVATHRIGKNAEFVNSLNVFPVPDGDTGTNMNLTIESGAKAVSEN PSTSVSDLTESLAKGMLMGARGNSGVITSQLFRGFYKATQGMKTLTAQELANAFSNGVAT AYKAVMKPVEGTILTVARVAAQAGATKANNTDDVTEVMKAVVEGAKKALKSTPDLLPVLK QVGVVDSGGQGLLFIYEGFLEGLMGENFADQYQPDENEMDEMINAMHHQSSVQSQLATQD IKNGYCTEIMVDLDADVPNKKKFDLEEFRKHLSGLGDSLLAVSDGEIAKVHVHTEHPGDV FQYGSQFGQLGKIKIDNMRIQHESIVDQDEEQQEAVDFAVIAVASGNGIRKLFESEGVNR IISGGQTMNPSTQDFIDAIKKSGAKKAIVLPNNGNIVMAAKQAAEVSDIPVGIVPTKTIS QGLTAMLSFNPDASVDENVEAMTEDLDTVVSGEVTQATRDTEIDEVEIHKNDYLGIVDGK IKVDNADLIKTTVDMIEKMLDEDSEIITIMFGRDASEEQAQEVVEQLEAKHDDLEFEIHD GGQPVYHFLVSVE >gi|256541425|gb|ACPV01000049.1| GENE 16 20558 - 20920 540 120 aa, chain - ## HITS:1 COG:SPy1886 KEGG:ns NR:ns ## COG: SPy1886 COG1302 # Protein_GI_number: 15675703 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 120 1 120 121 121 62.0 3e-28 MAVKIKTKDGLIDISNGVIATVVGGAATSNYGVVGMASKNAIRDGFDGILNRANYKRGVV VKSEDNEITVDVYIIVGYGLKISEVSKNVQDSVKFNLKNQLGIDTKAVNVIVQSVKVLDE >gi|256541425|gb|ACPV01000049.1| GENE 17 21088 - 21273 316 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227878875|ref|ZP_03996780.1| ribosomal protein L28 [Lactobacillus crispatus JV-V01] # 1 61 1 61 61 126 100 3e-28 MAKDYVTGKKTTFGNKRSHSLNSTRRAWKPNLQKVRILVDGKPKRVWVSTKALKSGKVTR A >gi|256541425|gb|ACPV01000049.1| GENE 18 21390 - 21599 301 69 aa, chain - ## HITS:1 COG:no KEGG:LBA1313 NR:ns ## KEGG: LBA1313 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 69 33 101 101 111 91.0 7e-24 MYKNHVHIFDKKKKKEVATINGLARNVTYQDLDLPTKVGEMITEYAYTPIDERMADEIPD DDKHHNIMK >gi|256541425|gb|ACPV01000049.1| GENE 19 21735 - 22409 587 224 aa, chain - ## HITS:1 COG:L76216 KEGG:ns NR:ns ## COG: L76216 COG1564 # Protein_GI_number: 15673806 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Lactococcus lactis # 26 220 19 210 211 131 37.0 1e-30 MKAYALLGGPTELWPEDIEEKLAQADLVIGVDRGALFLEELGIIPDVAVGDFDSLHENDL SQIESNVQDIRYSNPVKDWTDSELMLQIAFEDYHVDELVIFGATGGRLDHFLINLLMLLN PEMRLYAKKVTLIDQQNLICFFNAGTHVVQKRKNYSYIGFAALTAIEDFNIIGARYELKH YSGNYPRVFSSNEFLPNSNEFRISLQNGMIAAIYSKDINRFHDL >gi|256541425|gb|ACPV01000049.1| GENE 20 22409 - 23059 728 216 aa, chain - ## HITS:1 COG:lin1932 KEGG:ns NR:ns ## COG: lin1932 COG0036 # Protein_GI_number: 16800998 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Listeria innocua # 3 215 4 216 218 176 43.0 2e-44 MMIAPSILNANNIDLKNDIENAVQAGISRFHIDIMDGHFVPNLSFGPQLIKDFKREFPMT DAEIHLMSDAPDKLVPAFVSAGADLVEIHYEAMDKPKLYYWFDYLASNGVDAALAISPDT PVEVVEPYLPLLKQVLVMTVKPGFGGQSFLPESVSRIKSVREIVGSDFDIEVDGGINDQT IKLAENAGANIFVVGSYLYENGDVGSQVHKLEKIIK >gi|256541425|gb|ACPV01000049.1| GENE 21 23072 - 23962 607 296 aa, chain - ## HITS:1 COG:L187815 KEGG:ns NR:ns ## COG: L187815 COG1162 # Protein_GI_number: 15673908 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Lactococcus lactis # 3 290 2 296 307 234 41.0 1e-61 MKLAQGTVVGLIAGYYDVETAAGIVRTRARGVFRQKKQKPAVGDHVEIQIDDKGMSYLVK ILPRINRIGRPAVANVSHVLLVISAVEPDFSVELLDRFLTFFSWQKVGVTIYLSKADLLS EAKLNTIKQALAYYQKIGYLVFTDYHEMQIQIPKMIEKNQIWTLAGQSGAGKSTLLNHLK KDANQATGAISTSLNRGKHTTRKVELFKLGAGFLADTPGFSSIDLTPIKLNELCNYFVEF KKASIHCKFRGCQHLQEPGCEVKKLLEAREILESRYEDYLAMRTEISEGRIPEYLK >gi|256541425|gb|ACPV01000049.1| GENE 22 23963 - 25993 1791 676 aa, chain - ## HITS:1 COG:lin1934_1 KEGG:ns NR:ns ## COG: lin1934_1 COG0515 # Protein_GI_number: 16801000 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Listeria innocua # 5 318 4 321 342 342 56.0 2e-93 MIDKGYLLGERYRIIDTLGEGGMANVYLAEDIILQRKVAVKILRLDLQNEPQTQARFQRE ALATSELSHPNIVSVLDVGTDHGLPYMVMEYVDGPNLKEYIQKNSPLDLNEIIRIMDQIL SAVALAHKHNVIHRDLKPQNILMDKRGNIKIADFGIAVALNQSSITQTNSVMGSVHYMSP EQTRGGMVTKQSDIYSLGIILYELITGTVPFNGDTPVAIALKHAQEPIPSIRKKDSSVPQ ALENVVLKATAKDPRDRYATAQEMKADLDSSLDPERADEPVFVPYHGNNDDKTIVLPGFK PQKEEKEVVEPAKTESVESSKLVKKKTFLQNVKSHKWWWLISIIAAGLIIFMMIFALSGT GNKRQDVNIPDVTNIAEKAAESKLEAAGLQVGKIIRRQSDDIKKGRVIATKPTAGNSLER GKSVDLIVSSGSSMVKVPDMVGKNYAEAAEKLENMGFNVVREDQYSNKVDENQVISQSIA AGVEVKPTQTTITLIVSRGKQARSHSNMVTLKDLSNYSLKSAQDYAKEHGLTLQINQEYS DDVEKGLVISMEPGPGTKVERGSTVTIKISKGPKEDKETTVTKTFTVNYVGDDLSKSEKP DNDKGSNNSESESVNGKGDHVQIYIKDDDHSLNNIYRDLYIKHDMSFSIPFNIREGSGQL KVVRNGDTVLNEKVTK >gi|256541425|gb|ACPV01000049.1| GENE 23 25983 - 26789 642 268 aa, chain - ## HITS:1 COG:SPy1626 KEGG:ns NR:ns ## COG: SPy1626 COG0631 # Protein_GI_number: 15675502 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Streptococcus pyogenes M1 GAS # 19 264 1 244 246 191 42.0 9e-49 MAMMDFSLLNLSYEVRFLIETAYASSIGKVRKSNQDFVKVFKNQKGIVLAIVCDGMGGHQ GGDVASTMAVTHLGHNFSMTDFADANLAHKWLDVQLNSENETILKTADKFPDLNGMGTTI VLAFAFDKNALIAHLGDSRAYSYSEGKFVQLTEDHSLVNELVKMGQITKEQAKHHPQKNI ITQALGVSSTIDPEFDEIKMGENDIILLCTDGLTNSLSDPQIQQILATKELSLRERCNKL ISEANRLGGGDNITVCLIWNKEDESSDR >gi|256541425|gb|ACPV01000049.1| GENE 24 26743 - 28104 1081 453 aa, chain - ## HITS:1 COG:SP1734 KEGG:ns NR:ns ## COG: SP1734 COG0144 # Protein_GI_number: 15901566 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pneumoniae TIGR4 # 17 450 5 433 437 332 43.0 9e-91 MVKVVSLSQVKKLSIDKSARAVSLETLIKVLDQGSYSNISLNNSLKHSNLSIADQNLATN IVYGTIQYRLFLEYQLKGLVRTKLTEKYIKPLLLMSLYQLIFLDKVPDRAVLDEANKLAK QYGKRHSAGFRLANGILRSFTRRGVILPAENNPVKYLSVKESVPEWLVQYLIDNWGLDKA KSVLNSINEPAKNSVRISKLADKEQVFAQLERDNYQPQWSKLSSDDVILSHGGISESDLF EEGKLTIQDEAASLVVEAFDFEQDEHVLDACSAPGGKTVQIAESIVNGDVTALDIHDKKL RLVRDNAQRMHVANKVKTKACDARKATEIFAAGEFTKILVDAPCSGLGLLRRKPEIRYTK RQQDLQNLQKIQLAILTAVSSLLKKNGELVYSTCSISMEENEEVVKKFLQAHPDFELVPF KLTKLESKTGMLKIMPDLDGNDGFFIAKFKLRG >gi|256541425|gb|ACPV01000049.1| GENE 25 28055 - 28981 998 308 aa, chain - ## HITS:1 COG:SP1735 KEGG:ns NR:ns ## COG: SP1735 COG0223 # Protein_GI_number: 15901567 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 307 7 311 311 293 53.0 2e-79 MGTPKFSVPVLEGLIDEGYEIKAVVTQPDKKVGRKQKITKSPAKIAAEKHDLPIFQPVKL SGSDEMQKLIDMHADLIVTAAYGQFLPTKFLNSVKIAAVNVHGSLLPKYRGGAPIQYSLI NGDKETGITIMEMVKKMDAGDIYAQEAIKIEPDDNAGTLFSKLSIVGRDLLLKTLPAIID GSIKKVPQDPEKVVFSPNITKEQEKLNVDMTAEEANDMIRALNPDPGAYLMIEGKRFKIW KAEIASDSSSLNAGSVVANKGRFAISFADNSVLNLLEVQPSGKKRMDIKSFLNGQGSKFV PGEEIVDR >gi|256541425|gb|ACPV01000049.1| GENE 26 29012 - 31411 1666 799 aa, chain - ## HITS:1 COG:SPy1629 KEGG:ns NR:ns ## COG: SPy1629 COG1198 # Protein_GI_number: 15675505 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Streptococcus pyogenes M1 GAS # 2 799 4 794 794 749 48.0 0 MIAQVIVDVAARQTDRIFEYHIPTELEKDIAIGSRVVVPFGPRKVQGFVVGITDQSEFKG KLKDLLVVVDEMPPLTPELVKLSADLAKNIFSYRIKILQAMLPWVMRANYRKLLVPANDR AAKMPLFQGDPIDLNKITDLAEIKQFRKLLQDDQAKIEYVVENRAKKKKENQYELALKKE EYPKIYNTLRQNAVKQKKLLMDIIDNAADYPKSQSQLEKQLGLTAASLNSAITKGWLNKK SVEVYRDPLSGFDDGEHKTAVTLNGEQQGALNQITQAIEQRQAETFLLEGITGSGKTEVY LHAISKALKQGRNALMLVPEISLTPQMVRQVKARFGQEVAVLHSALSEGEKYDEWRRIRR GETKVVVGARSAVFAPLDNIGLIVIDEEHESSYKQETDPRYNARDVAIWRSKFHNCPLVL GSATPSLSSRARAQKNVYHLLRLTERANQKKLPKVNLIDLKHVQFAGGQFDLSVELVDAI KKRLAKKEQVILMLNRRGFANFMLCRECGFVLKCPNCDVSLNLHKDTNSMQCHYCGHTEP VPTRCPNCPSSQIRFLGAGTQKVQEELEELLPGARILRMDVDTTRRKGSYKKILDAFGAH EADILLGTQMIAKGLDFPNVTLVGVINADTGLWLSDYNASEKTFELLTQVAGRAGRADKE GEVLIQTYNPEHYAIQLAQTQDYERFYGYEMNMRHAGNYPPYFYTVLISIAAKKEQNAAR EAFRIKRYLNEHLHEPTIILGPTPSAISRVKNKYYYQILVKYKKEPNLNELLHHVQDSAQ EAKKYGLSIFIDNEPERIM >gi|256541425|gb|ACPV01000049.1| GENE 27 31462 - 31686 389 74 aa, chain - ## HITS:1 COG:SP1737 KEGG:ns NR:ns ## COG: SP1737 COG1758 # Protein_GI_number: 15901569 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Streptococcus pneumoniae TIGR4 # 6 65 4 62 103 61 60.0 4e-10 MRITYPSIDKLLSRVDSRYSLSVLAAKRAHELEAGDPPTLEHFKCDKAVGKALEEIAAGK VTVDPAHAEVNLED >gi|256541425|gb|ACPV01000049.1| GENE 28 31692 - 32306 596 204 aa, chain - ## HITS:1 COG:SP1738 KEGG:ns NR:ns ## COG: SP1738 COG0194 # Protein_GI_number: 15901570 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 201 1 201 208 226 56.0 2e-59 MADKGLLLVLSGPSGVGKGTVKSAIVENKVFPFEYSVSMTTRQPRPGEVNGQDYFFVSED RFQEAIKNGELLEYNKYVGHYYGTPLAPVKKMLHDGKDVLLEIDVNGAQKVREKMPDGVF IFLTPPDLHTLHLRLEHRGTESEDVIRGRIKQARNEILEMEDYDYAVVNDTVANAVDHIK AIVDAEHVSVKRVIDDYRKMVKED >gi|256541425|gb|ACPV01000049.1| GENE 29 32414 - 32851 394 145 aa, chain - ## HITS:1 COG:lin2984 KEGG:ns NR:ns ## COG: lin2984 COG4405 # Protein_GI_number: 16802042 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 3 144 7 151 153 116 43.0 2e-26 MTSISKFWRDFCVEHQVSPTALEGAFAFGANSRDADILSDLVKSGIKTATTSLYSAQEDV PVVGMYAIVLNGRNEPVCVIQNKTVEIMPFKNVSAEHAYLEGEGDRSYESWRKVHEKFFA RECQELGREFTDETEVVCETFEKII >gi|256541425|gb|ACPV01000049.1| GENE 30 32844 - 34526 1884 560 aa, chain - ## HITS:1 COG:SP1202 KEGG:ns NR:ns ## COG: SP1202 COG0497 # Protein_GI_number: 15901065 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Streptococcus pneumoniae TIGR4 # 1 556 1 552 555 394 40.0 1e-109 MLVELDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRGQKEMIRSGES KAIITGLFELDDQKEKIAELCDQYGLPHDDDQLVISRELAVKGRNVVRINGQLTTINVLR EIGSYLVDIHGQHDQQILMDQDRQIDLVDNYAPASFKADLATYQTDYAQWQKLTSQLLHL RQDAQELAQKQDILQFQNNELEAADLEDPQEDEKLEEEYNELNNYQKIADTANYFMQLYD DDEHGIATLLGDAQNAATDLTEFGSKFKDFAKTVDDGVYALNDARSELSNLMDAMDFDEE RFQYVTNRLDTLNSLKKKYGPTLADVFAFYQKVQKELSQFETGGLDEEKLQAEVAKIEER MTQEARDLHLIREKVAHSLEEQIKQELADLYMEKARFSINFDETKTFTDKGTDAIVFLIA PNPGEDLMPLVKIVSGGEQSRLILALKAIFSRVEPVGTMIFDEIDTGVSGRVSAAIGKKM HSIGRNKQVIAITHSPQVAAAGDQRYLVAKQVKDGSTFTQIGPLSKEETITAIAQMMAGQ DVTDAAKKNAADLIKSIKDD >gi|256541425|gb|ACPV01000049.1| GENE 31 34537 - 35349 675 270 aa, chain - ## HITS:1 COG:lin1403 KEGG:ns NR:ns ## COG: lin1403 COG1189 # Protein_GI_number: 16800471 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Listeria innocua # 1 253 3 254 274 285 56.0 5e-77 MAKQRADILLAEQGIFHSRSAAQRAIMAGLVSDHNHQRIDKSGTKFPEGEKFYVKDDGKK YVSRGGFKLEKALKVFDIDLTNKICLDIGASTGGFTDVALQNGAQMVYALDVGYNQLAWQ LRDDPRVVVMEKQNFRYSKPEDFDQGLPDFAMTDVSFISLDLIMAPMYAILKNQCDAVCL IKPQFEAGPENVGKHGIVHDHEVHKAVIEHTMQKALEIGFNVLGVDYSPIKGGKGNIEFL IHLQKDEANGGRNLWQGSPAEVVERAVSGL >gi|256541425|gb|ACPV01000049.1| GENE 32 35350 - 36219 981 289 aa, chain - ## HITS:1 COG:alr0213 KEGG:ns NR:ns ## COG: alr0213 COG0142 # Protein_GI_number: 17227709 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Nostoc sp. PCC 7120 # 30 270 43 287 309 173 41.0 3e-43 MTAFTYFKDEWTPVIDDYLAKHLASEVEDQKISQIMAYSVMGGGKRLRPLLFLATLNALG RKIEEPEIRIACGIELIHTYSLIHDDLPAMDNDDYRRGKLTSHKKWGEAEAILAGDALLP MGIQWIAEGSKSAKLVDLITKAVGPNGMVGGQYLDIDSTNNASVAGDAKFINKMEWLKTG CLIQASVEMAAVYAGASDIEQVKLVDFAKIFGRSYQIYDDLVDVVETSAEAGKATHKDEA EGKNNTLTLLGIDQSRKELTDLIKQAQDDLHGLNGEVLTGFLDLYQKVL >gi|256541425|gb|ACPV01000049.1| GENE 33 36222 - 36464 300 80 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01339 NR:ns ## KEGG: LCRIS_01339 # Name: xseB # Def: exodeoxyribonuclease VII, small subunit # Organism: L.crispatus # Pathway: Mismatch repair [PATH:lcr03430] # 1 80 1 80 80 107 100.0 2e-22 MAVKKNNFEEQLTNLEQIVQNLENGNVPLEDALKEFQEGVKISRDLEKKLNSAEETVAKL IDSDGTEHKLDPNNASAPEE >gi|256541425|gb|ACPV01000049.1| GENE 34 36445 - 37812 881 455 aa, chain - ## HITS:1 COG:L0254 KEGG:ns NR:ns ## COG: L0254 COG1570 # Protein_GI_number: 15672836 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Lactococcus lactis # 5 438 3 412 417 347 44.0 3e-95 MAENKYLTVTDLNYYITQKFKNDPYLHKVFLQGELSNFRYRRNSHQYFSLKDEKSKINVV MFRSFFDKVKFKPEEGMKVYVVGYVSVYGPQGSYQFYAEQMEPAGLGALYEQLKQLQAKL AKEGLFDPEHKKKLPHFPDRIAVVTSASGAVIHDIMVTANRRFPHAEIDLYPAQVQGDTA ADSLVRAMRQIAAQGDKYDVMIIGRGGGSLEDLWPFNEEEVVRQVYAMQMPVISSVGHET DTTLCDLVADARAATPTAAAEYATPNTLDEIAHIKQLTSQLVASMQNIIRSKRERLSRVQ NSVILREPTRLYDQQIQQVDQLKQRLQNSMQNRLTHSVQGYQLLKQRLFSVSPDKRIGQM QQQEHFLQQRLIDNMQHYLKNKRNSFTQVMQQLDDYSPLKTLERGFVYSTDEQGKTISSV KQVQKDDHLRLHFKDGQVEAVVTKVKEEQNGSEEK >gi|256541425|gb|ACPV01000049.1| GENE 35 37799 - 38650 752 283 aa, chain - ## HITS:1 COG:BH2784 KEGG:ns NR:ns ## COG: BH2784 COG0190 # Protein_GI_number: 15615347 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Bacillus halodurans # 4 277 5 278 279 284 51.0 2e-76 MGKILDGKAFANELGQNLKEKVKKLKEEGITPHFCVINIGDDPASKIYVRTKKRRAEKMG IIQDIYQMPADTKQEEVLALIDKLNADPEINGLMVQLPAPEQIDADALLKRIDPNKDVDA LTPANIGQLWMENHFVEPATAEGIIALLKHYQITLAGKRVVVIGRSNIVGKPVAALMLEE NATVTVCHLYTKNLAEITRQADIVVSATGQAFLVTADMVKDGAVVVDVGMNHVNGKLVGD VDFDNVKEKASYITPVPGGVGPLTVQFLMEAVVKLTRRQNGRE >gi|256541425|gb|ACPV01000049.1| GENE 36 38707 - 39102 525 131 aa, chain - ## HITS:1 COG:SPy1818 KEGG:ns NR:ns ## COG: SPy1818 COG0781 # Protein_GI_number: 15675648 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Streptococcus pyogenes M1 GAS # 40 130 51 141 150 63 32.0 1e-10 MNQHESRKVAMQAVYLANQEPDLTAEEVEAKVVATLNLKQLSAYSKKLIEGVLEDRKNLQ SELTSHLKKGWRLERVSQTVVAIMEVALFEIKHSDEIDAKAAVNEALNLCDEFAEPKEKP FINGMLANFVK >gi|256541425|gb|ACPV01000049.1| GENE 37 39102 - 39533 489 143 aa, chain - ## HITS:1 COG:BS_yqhY KEGG:ns NR:ns ## COG: BS_yqhY COG1302 # Protein_GI_number: 16079489 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 135 1 135 135 92 39.0 3e-19 MADSSKILLSGEENSEQIKIDPSVLEVILGIAAEKVDGVAGMRGSLKSGLNWVFGREDHG KGVNISVDDDNKLIADIYVYLESGVNVPKVAMTLQKKLKAQLLQMTDLELKAINVHVVGL VFPEDENTDQTTSELFPEDEEEK >gi|256541425|gb|ACPV01000049.1| GENE 38 39552 - 40121 839 189 aa, chain - ## HITS:1 COG:BS_efp KEGG:ns NR:ns ## COG: BS_efp COG0231 # Protein_GI_number: 16079501 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Bacillus subtilis # 3 187 1 185 185 251 66.0 7e-67 MTMISVNEFKNGLTIQYNNDLWRIVEFQHVKPGKGSAFVRSKLKSLRTGAVQEYTFRSTA KVETADIQTKSMQYLYNDGSSYVFMDTSTYDQLAIPNEQIGDEANYLLENMIVNVVMHEG ETLGIQLPNTVDLKVAKTEPNIKGDTSSGGGKPATMETGLVVNVPFFINEGDVLTINTAD GTYVSRANK >gi|256541425|gb|ACPV01000049.1| GENE 39 40202 - 41311 1210 369 aa, chain - ## HITS:1 COG:TM0042 KEGG:ns NR:ns ## COG: TM0042 COG0006 # Protein_GI_number: 15642817 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Thermotoga maritima # 14 363 3 354 359 256 42.0 6e-68 MENRQELLSLINQRIEHVTDLIKEANADALIIFNQANYRYLTNFTGEEAQLILTASGERV LLSDSRFAGQIKAQAPGEMDVVMKHSSDYEELTKALKKMDVKRVLVEGEFVSASEYEKLK QLNPELEFVMVEELVERVRNIKDDLEIAALRKAIDISMESFKGILPMIKPGVKERAIGAK LDYLFKVNGGDGPDFDTIVASGVRSAWAHGVASDKELSEGDMIVIDFGSFYHGYAADITR TVSLGEVDAEMHKIYDIVHEAQRRGIAAAVAGNTGYDVDKAARDYITEQGYGQYFGHGIG HGIGLEIHELCQPALPFRTTKLVNNMVHTVEPGIYLPDKGGVRIEDDILVHDQTPETLST LPKDELISL >gi|256541425|gb|ACPV01000049.1| GENE 40 41428 - 41724 513 98 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227878898|ref|ZP_03996803.1| ribosomal protein L27 [Lactobacillus crispatus JV-V01] # 1 98 1 98 98 202 100 4e-51 MNMNILGMKLYAHHKGGGSTANGRNSAGRRLGAKAGDGQTIHAGTIIYRQRGTKIHPGKN VGQGGDDTLFALVNGVVKFERLGKYKKQVSVYPAEEAK >gi|256541425|gb|ACPV01000049.1| GENE 41 41737 - 42048 525 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507744|ref|YP_001577705.1| 50S ribosomal protein L21 [Lactobacillus helveticus DPC 4571] # 1 103 1 103 103 206 100 1e-52 MYAIIKTGGKQYKVAEGDSVFVEKLDAEEGSSVTFDEVILVANGDDVKVGTPLVDGAKVT AKVEKQGKEKKVVTFKYKPKKHSHSKYGHRQPYTKVTVEKIEA >gi|256541425|gb|ACPV01000049.1| GENE 42 42207 - 43043 795 278 aa, chain - ## HITS:1 COG:CAC0848 KEGG:ns NR:ns ## COG: CAC0848 COG1284 # Protein_GI_number: 15894135 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 3 273 11 282 292 133 31.0 5e-31 MKNIKQRSWMRWLVFLAGLEIIAISINLFYGPINIAAGGSTGISILVDAVWGINRSITVF VVNGLMLILAAIFLGKKTTQNIALGSLLLPVLMEVTPSFKAVNNDLLAVIYGGALMGLGV SLLYRVNASSGGTTIPPMILKKYFYLNPATTLLCIDMVIIFLNIFVDGWNAFFLAAFSQV VTAITMRYAETGFDKKYQVRIMSNSDLDRIQDMLKEDYQGLTIYDVIGGYSDESQRQLLI VVDPREYGPLISKVHEIDQDAFIITENVAKVHGGQWRM >gi|256541425|gb|ACPV01000049.1| GENE 43 43127 - 44503 1509 458 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01349 NR:ns ## KEGG: LCRIS_01349 # Name: not_defined # Def: V-type sodium ATP synthase subunit # Organism: L.crispatus # Pathway: not_defined # 1 458 1 458 458 827 98.0 0 MYDYRNNIKIILNKTEADDKSLENSLSAIKAILNMAEDNTAEKSETKSVTQPKNKIANTQ SIAQRNADLKQIKQLLIGLTALIETPGDEKAKKSSLDALHKLTFVPGVGKRYGNVLGKLD QAIQKSKTTKEAVNKKIFEEAMKPKEQPKRDYRKGRRYTVIRALSGCNLINDSGQIVYRI KESQIHSLNLKSGDIVEAIENRDNPNYEAEVLRVVGYRKLRMRDYDPIEEFRYAVVRGKA NQLAITRNIKGEKLRIRGKDITSPVDSSYYQGENIHVEDGSIVDLAWYTGDVRIKKNPAE AVQIRWIYQVDPPKKSDLSYQKKNKSKKEETEELTKLDMNLHYQRVGIAIGDNQNEGILE GIVSRYNGIPIPIDAFEGKKKVMERQIKDLDIVILMTAYAAHDATWNIQEFASKYGVKFA VSSSKGYRSFERALYRAENGLPAYEGTQSIDYKEVKNK Prediction of potential genes in microbial genomes Time: Wed May 25 05:20:30 2011 Seq name: gi|256541424|gb|ACPV01000050.1| Lactobacillus crispatus 125-2-CHN cont1.50, whole genome shotgun sequence Length of sequence - 6073 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 4, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 82 - 119 3.1 1 1 Tu 1 . - CDS 136 - 315 210 ## gi|256843416|ref|ZP_05548904.1| predicted protein - Prom 428 - 487 9.4 - Term 434 - 467 4.5 2 2 Op 1 . - CDS 489 - 668 383 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog 3 2 Op 2 . - CDS 716 - 2509 1438 ## COG4907 Predicted membrane protein 4 2 Op 3 . - CDS 2513 - 3388 760 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 3465 - 3524 8.1 - Term 3483 - 3526 7.1 5 3 Tu 1 . - CDS 3548 - 4786 1408 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) - Prom 4932 - 4991 8.5 - Term 5186 - 5234 3.5 6 4 Op 1 . - CDS 5275 - 5616 495 ## COG2337 Growth inhibitor 7 4 Op 2 . - CDS 5652 - 5927 334 ## gi|262046546|ref|ZP_06019507.1| predicted protein - Prom 5955 - 6014 6.7 Predicted protein(s) >gi|256541424|gb|ACPV01000050.1| GENE 1 136 - 315 210 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843416|ref|ZP_05548904.1| ## NR: gi|256843416|ref|ZP_05548904.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 59 25 83 83 104 100.0 2e-21 MNLKKKIAISATALTVALSTAFPIAAAQSQPVKAVGIVLVHRVTAGENFANWFNWLRTR >gi|256541424|gb|ACPV01000050.1| GENE 2 489 - 668 383 59 aa, chain - ## HITS:1 COG:SP1017 KEGG:ns NR:ns ## COG: SP1017 COG1942 # Protein_GI_number: 15900888 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Streptococcus pneumoniae TIGR4 # 1 58 1 58 60 63 55.0 9e-11 MPFVHIELIKGRSDEQITNLMKDVTEAVHKNTGAPKEHIHVIINELGKHTYGQGGEWRA >gi|256541424|gb|ACPV01000050.1| GENE 3 716 - 2509 1438 597 aa, chain - ## HITS:1 COG:FN1127 KEGG:ns NR:ns ## COG: FN1127 COG4907 # Protein_GI_number: 19704462 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 40 528 32 525 606 93 22.0 1e-18 MKKKYLGLLALLSLLSVFAIWGQSVRADVDYDIDNVRAIARVNKDGSLTMYRTIKYSFDS DARGLYYKQNLAVKQKLSNIQVKVDGQNIKAATTGKNNTYKLQKQGNSYNFKVYHRIKEN DKVKVEYSYLIHRAITNYLDTAELNFKIVGNGWDTDLDHVRAEVIFPGAVKGLKAWAHGP LSGYTQVLPKEGKIIMTADDVAGDSGVEVHAIFPTTVTSANQNIVKENKKRAIEKQEAAL AKEANQKRQRKQMLSIGLMIISVLVGFVVIIRGFFIKKVGVKPKIERDLVHNYEIPDISP TAAQILDEADKPNVKAFTAYLMQLAGKNKIKIEKYQTKHLKRTNYRITLVDDSVLTDDLL DFIFNKVGDGKSFTTKDLRDYTSKKLGRRFDKWCDGQYKQVEDKDLLDKKYKKQRSNFRT GMLMGMIASFAIWVISLMMANNIPSFVIIIGIMMIVLEVAAFIVGNSRLSIYTQKGALET DQVRCFKKMLDDIGQFKMKDVGDLILWEDIMPYAVAFGLSKKVLKQLKIEFADELDAAPV LFYSGFYSSSSDSFEHSFERSFSSGVSTGLSSVSGSSGGFSGGSSGGFGGGSGGGAF >gi|256541424|gb|ACPV01000050.1| GENE 4 2513 - 3388 760 291 aa, chain - ## HITS:1 COG:CAC3665 KEGG:ns NR:ns ## COG: CAC3665 COG1073 # Protein_GI_number: 15896898 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Clostridium acetobutylicum # 41 286 6 258 265 90 27.0 3e-18 MLLTLTGCTIKSTTPKKAKSSVKTVKVDKQQSKEKQAKYQVIDQVWRIQQDGVDIYGHIY LPQGLAGKKKAVILAHGLAGNYRDLTSYAKYLASCGYVAYTFDFPGGAKNGQSSGVDQLK MSIFTEEKNLQLVLNTIKNRTDVDRKQVSLLGESQGGAVAAMLASKYPQEVKSLILLYPA FSITDYAKAAFKSEKQVPDKLNLFGFTIGKAYFENLFKYNLLKEATKYHGPVLIMHGTSD MIIPDSYSIMANKKFKHSKLYLFKGAGHDFKGKYHSRADTLIDKFLQKNGK >gi|256541424|gb|ACPV01000050.1| GENE 5 3548 - 4786 1408 412 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 49 245 157 343 444 115 38.0 1e-25 MTTTKKIIVRLACATVLGTAGVALTQVNIPQTAVVNAATTSVAARALGVDVASYQNADLS SHAQAGAQFAIVKVSEGTSYRNPKASSQISTALSNNMMPMAYHFATFSSNASAAAAEANY AVQAAQAFGLPKGSYIACDYETGSGNNIYGGKTPTANAIIAFMDTIKNAGYKPLLYASSS VLQNNIDTNSVIAKYPNSLWVASYAISGRIDSPNFNYFPSMNGVSIWQFTDNWKGLSVDG NIAVLPLSIDGNVTSNNGAISQAPATSNTNSASSSNASSNTSNKSTSSDDDKGSATAGYV MKKSYIYNKKGERQSGYYAAYTNITHYGVVTLDNGKTALNMGNGRYIMASNVLGNSRVLK HNAYVYNNKGNRANWRVLRKGTPIKTYGSRMRVNGKSCYRIGRNMYVKAANF >gi|256541424|gb|ACPV01000050.1| GENE 6 5275 - 5616 495 113 aa, chain - ## HITS:1 COG:BH3721 KEGG:ns NR:ns ## COG: BH3721 COG2337 # Protein_GI_number: 15616283 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Bacillus halodurans # 6 105 6 104 109 68 34.0 2e-12 MIDVHQGDIIIIGFDPSLGHEQQGTRPALIVSNHDFTRLTRSLVKVVPISRTENDFPLHI PVPEGLKVHGVAEAQQETTLDLAARHWYKVDHAPASFIKDVINAISDSYEFEE >gi|256541424|gb|ACPV01000050.1| GENE 7 5652 - 5927 334 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|262046546|ref|ZP_06019507.1| ## NR: gi|262046546|ref|ZP_06019507.1| predicted protein [Lactobacillus crispatus MV-3A-US] # 1 91 1 91 91 146 98.0 3e-34 MEITLQKWGNSQGIRLSKSLLKDLGITTEKATFEVKVKNKELILKRKKESKLAQRFEGFD YEAYWDKWDNEHPGESKEVDWGKPVGKEIKW Prediction of potential genes in microbial genomes Time: Wed May 25 05:20:49 2011 Seq name: gi|256541423|gb|ACPV01000051.1| Lactobacillus crispatus 125-2-CHN cont1.51, whole genome shotgun sequence Length of sequence - 43156 bp Number of predicted genes - 42, with homology - 41 Number of transcription units - 17, operones - 10 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 11 - 69 10.1 1 1 Op 1 . - CDS 85 - 345 297 ## gi|256843423|ref|ZP_05548911.1| predicted protein 2 1 Op 2 . - CDS 368 - 649 289 ## EF2118 hypothetical protein 3 1 Op 3 . - CDS 671 - 1462 872 ## COG1192 ATPases involved in chromosome partitioning 4 1 Op 4 . - CDS 1522 - 1680 158 ## gi|256843426|ref|ZP_05548914.1| predicted protein - Prom 1713 - 1772 11.7 + Prom 1714 - 1773 12.4 5 2 Op 1 . + CDS 1903 - 2190 408 ## LSL_0030 DNA-damage-inducible protein J 6 2 Op 2 . + CDS 2190 - 2498 318 ## LSL_1996 hypothetical protein + Term 2509 - 2553 9.4 - Term 2686 - 2730 -0.9 7 3 Op 1 . - CDS 2780 - 3889 725 ## HDEF_1084 putative R of type II restriction and modification system 8 3 Op 2 . - CDS 3882 - 5948 1714 ## COG0286 Type I restriction-modification system methyltransferase subunit - Prom 6000 - 6059 1.8 9 4 Tu 1 . - CDS 6061 - 6534 433 ## gi|256843431|ref|ZP_05548919.1| predicted protein - Prom 6557 - 6616 9.1 + Prom 6562 - 6621 7.6 10 5 Tu 1 . + CDS 6845 - 7027 61 ## gi|256848827|ref|ZP_05554261.1| predicted protein - Term 6802 - 6865 17.0 11 6 Op 1 . - CDS 7020 - 7418 412 ## COG3654 Prophage maintenance system killer protein 12 6 Op 2 . - CDS 7415 - 7654 296 ## gi|256843434|ref|ZP_05548922.1| predicted protein - Prom 7686 - 7745 7.8 + Prom 7690 - 7749 7.2 13 7 Tu 1 . + CDS 7774 - 8022 63 ## 14 8 Op 1 . - CDS 8264 - 8944 456 ## FI9785_1758 hypothetical protein 15 8 Op 2 . - CDS 9025 - 11658 2389 ## COG0550 Topoisomerase IA 16 8 Op 3 . - CDS 11729 - 12166 329 ## gi|256843437|ref|ZP_05548925.1| predicted protein - Prom 12224 - 12283 11.6 - Term 12324 - 12373 10.2 17 9 Op 1 . - CDS 12387 - 12716 246 ## gbs0472 hypothetical protein 18 9 Op 2 . - CDS 12709 - 12984 359 ## pWCFS103_01 DNA-damage-inducible gene - Prom 13010 - 13069 6.0 19 10 Tu 1 . - CDS 13136 - 15211 1623 ## LKI_00125 hypothetical protein - Prom 15354 - 15413 6.8 - Term 15353 - 15411 1.9 20 11 Tu 1 . - CDS 15448 - 16230 456 ## LSL_2159 hypothetical protein - Prom 16251 - 16310 7.1 - Term 16342 - 16377 5.5 21 12 Tu 1 . - CDS 16391 - 17479 1003 ## BAA_B0109 hypothetical protein - Prom 17510 - 17569 3.5 - Term 17499 - 17532 2.4 22 13 Tu 1 . - CDS 17585 - 19192 916 ## BAA_B0001 hypothetical protein - Prom 19220 - 19279 4.9 23 14 Op 1 . - CDS 19296 - 19655 327 ## gi|256843444|ref|ZP_05548932.1| predicted protein 24 14 Op 2 . - CDS 19670 - 19897 285 ## gi|256843445|ref|ZP_05548933.1| predicted protein 25 14 Op 3 . - CDS 19918 - 20250 349 ## gi|256848841|ref|ZP_05554275.1| predicted protein - Prom 20274 - 20333 2.3 - Term 20338 - 20374 -1.0 26 15 Op 1 . - CDS 20597 - 21466 798 ## gi|256843447|ref|ZP_05548935.1| predicted protein 27 15 Op 2 . - CDS 21478 - 21726 241 ## gi|262046572|ref|ZP_06019533.1| predicted protein 28 15 Op 3 . - CDS 21729 - 22130 194 ## pWCFS103_28 hypothetical protein 29 15 Op 4 . - CDS 22133 - 22774 651 ## gi|256843450|ref|ZP_05548938.1| predicted protein 30 15 Op 5 . - CDS 22777 - 23349 354 ## gi|256843451|ref|ZP_05548939.1| predicted protein 31 15 Op 6 . - CDS 23370 - 24830 1689 ## LSL_0796 hypothetical protein 32 15 Op 7 . - CDS 24830 - 26839 1597 ## COG3451 Type IV secretory pathway, VirB4 components 33 15 Op 8 . - CDS 26850 - 27473 470 ## gi|256843454|ref|ZP_05548942.1| predicted protein 34 15 Op 9 . - CDS 27451 - 27777 276 ## gi|256843455|ref|ZP_05548943.1| predicted protein 35 15 Op 10 . - CDS 27781 - 30495 2644 ## BAMEG_B0010 hypothetical protein 36 15 Op 11 . - CDS 30540 - 33152 2110 ## pBT9727_0014 conjugation protein - Prom 33204 - 33263 3.9 37 16 Op 1 . - CDS 33346 - 35682 2233 ## gi|256848853|ref|ZP_05554287.1| predicted protein 38 16 Op 2 . - CDS 35757 - 36089 472 ## gi|256843459|ref|ZP_05548947.1| predicted protein 39 16 Op 3 . - CDS 36132 - 36428 303 ## gi|256843460|ref|ZP_05548948.1| predicted protein - Prom 36448 - 36507 1.5 40 16 Op 4 . - CDS 36523 - 38745 2617 ## EF2525 cell wall surface anchor family protein - Prom 38769 - 38828 4.4 41 17 Op 1 . - CDS 38832 - 39962 1017 ## gi|256843462|ref|ZP_05548950.1| predicted protein - Prom 39988 - 40047 3.3 42 17 Op 2 . - CDS 40056 - 43067 3131 ## MCCL_plsB0065 hypothetical protein - Prom 43094 - 43153 4.4 Predicted protein(s) >gi|256541423|gb|ACPV01000051.1| GENE 1 85 - 345 297 86 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843423|ref|ZP_05548911.1| ## NR: gi|256843423|ref|ZP_05548911.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 86 1 86 86 130 100.0 2e-29 MSFNPNQGRKFAEVLKEPPRVSDDSSKEAPAKESSNYIKREKRRPYTFSLRPSARTKLTE IAKEHGYSSSSSFLNDVILEGKLEMK >gi|256541423|gb|ACPV01000051.1| GENE 2 368 - 649 289 93 aa, chain - ## HITS:1 COG:no KEGG:EF2118 NR:ns ## KEGG: EF2118 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 10 88 104 184 184 78 55.0 1e-13 MKVYTSSGVYEIKEHRVKILPSYFEAQVNNFKNFEIRKNDRNYQVGDLLLLEEYNPTTAN YTGREVHCLITYKTTFKQVPGYVVLGTKKLGTV >gi|256541423|gb|ACPV01000051.1| GENE 3 671 - 1462 872 263 aa, chain - ## HITS:1 COG:Rv1708 KEGG:ns NR:ns ## COG: Rv1708 COG1192 # Protein_GI_number: 15608846 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Mycobacterium tuberculosis H37Rv # 2 146 65 210 318 82 32.0 1e-15 MKIITFAAIKGGVGKTTLAYNYGEWLANHGSRILFIDLDHQSNLTQTYQIYDNEYTVGNI FLKNDQVKIHQINENIDLIAGDMHLDDIEADIETKVDKNMLLYMWLADNYDTRKLDQYDY IIIDCHPDFSIATKNAVIISDDILSPITPSEHGYSAKFNLEQRFKELKRETIDYRTRQSL VDAKLLFVGNMIKNNTRSSRELVEVLQKDPSVIVKIPNRELFNRSTLDKVAISTMMKDKK MQSRYGSFFNELNSIFGSITNNV >gi|256541423|gb|ACPV01000051.1| GENE 4 1522 - 1680 158 52 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843426|ref|ZP_05548914.1| ## NR: gi|256843426|ref|ZP_05548914.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 52 1 52 52 85 100.0 1e-15 MNMEGTIMNTISKHKANKFDKSFVGWMLVTQVVVIAVSAYLVSTGFFAALPV >gi|256541423|gb|ACPV01000051.1| GENE 5 1903 - 2190 408 95 aa, chain + ## HITS:1 COG:no KEGG:LSL_0030 NR:ns ## KEGG: LSL_0030 # Name: not_defined # Def: DNA-damage-inducible protein J # Organism: L.salivarius # Pathway: not_defined # 2 93 4 96 98 94 60.0 1e-18 MTSSTTIRLDDDLKRKMQKNLDAAGLSMNAYFVMAAKQLVLQKKVPFEILTEPEIPNKTT EKAMLLADAKDEGLVTDDSPSFTNVNDLMKSLDEN >gi|256541423|gb|ACPV01000051.1| GENE 6 2190 - 2498 318 102 aa, chain + ## HITS:1 COG:no KEGG:LSL_1996 NR:ns ## KEGG: LSL_1996 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 1 99 1 99 102 112 55.0 5e-24 MYTIKYEPQFKKDYKKFKKEHPELIKDFKNTVIQLTQKGKVGKDYDLHPLDKRGGNYSGH FDYHLSEGTVDVVVIYKPHKTNSIIRFVRIGNHGDLFEGKEK >gi|256541423|gb|ACPV01000051.1| GENE 7 2780 - 3889 725 369 aa, chain - ## HITS:1 COG:no KEGG:HDEF_1084 NR:ns ## KEGG: HDEF_1084 # Name: not_defined # Def: putative R of type II restriction and modification system # Organism: H.defensa # Pathway: not_defined # 132 366 105 329 336 173 43.0 1e-41 MVKYKEFKLGDLFEIQKVKGINKSKLVNPNISTNEYDYVTRTSLNNGIESTTDFVCDVPY NEPNTFSLGLLQMTFFYRERSWYAGQFVRKIIPKFKLNTKIALYFNTIFSRLSKVLLSVL VRHVDNVFRDSKVRLPVTDADEIDFNYMEQYIAELEQQRLAELDSYLKATGLNDYGLTDE DKKILAYKPIFQEFKIVDLFNVVNTHSILKSQVANLENGNVPYLTAAEGNNAVLKYINCP KEWIDEGNCVFIGGKTMVVTYQEKDFCSNDSHNLALYFKDSRYKSPLIQQYFVGSVRKAL SKKYSWDDSISKAKIRSDSVRLPVVSNTKNLDFNYMEKYIRAIEKLTIAEAVKYKDREIL TTESLINKM >gi|256541423|gb|ACPV01000051.1| GENE 8 3882 - 5948 1714 688 aa, chain - ## HITS:1 COG:jhp1365 KEGG:ns NR:ns ## COG: jhp1365 COG0286 # Protein_GI_number: 15612430 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Helicobacter pylori J99 # 2 686 4 674 678 453 40.0 1e-127 MVRSIEEKVEEYFKSELDSLGIRHYGKTGEINSEITSALRQAESKSGGAGNNYPDIQLLL EDNHSRRVPVMIEAKGGKNKLEKLDKAGQIVQVTKFGSDSKPNAKNPHKKGDPNYSAITT YATNGALHYGNAILDNSDCDEVIIMGINGTTLDTEGNLKDPEQKAYYISKANAGVPKHIR QLDSSFDLFKQINIDTLFGILDKLNLNDRELEKIKLETEDELEKRIKSIHQALYDDKSIQ NLLTTNEKLYVFTGLIMAGLQTKGVSQLEPAELKGNITERNNDGQIILNHIADFLNARKA ENSKINMIMALLQPIFTKQALWQPKNGESLIHKIYVQVYNDILPLLESNLHLDFTGKILN SLNDWVSIDNDRQNDVVLTPRYITNMMARLAHTNKDSFVWDLAMGSAGFLVSAMDIMVKD AKNTIQDKQKLECKIQNIKENQLLGVEILGNIYILAVLNMILMGDGSSNMVNGNSHELYK NYTQFPANVFLLNPPYSAEGKGFIFVQEALSQMTKGYAAIIIQENAGSGNGLPYTKNILK NNTLVASIHMPTDLFGGKASVQTAIYVFKVARPHEEDDLVTFLDFSEDGYTRMNRKKSGQ KVNLRDTDHAKERYEEVVAIVSDKKPKTNYYTERNHKVIKDTITLEGNDWTYNQHLKIDT TPAEEDFKRTVADYLSWKVSQVIGGQNG >gi|256541423|gb|ACPV01000051.1| GENE 9 6061 - 6534 433 157 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843431|ref|ZP_05548919.1| ## NR: gi|256843431|ref|ZP_05548919.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 157 1 157 157 279 100.0 4e-74 MDELRLALYDDIAQVDEPVLKLSKSYQTKYWRGIDSDISFSLILKRKNGDIQLIVDQGLT TIGAGRNDIGLDESMLMTYLIKFNLNKSELLRYKKETDNLNSLVNDPEVVGLDDNEAKEI KQDWINTQNSLNDAMTSLMNQVISWVKANYNEYPVFA >gi|256541423|gb|ACPV01000051.1| GENE 10 6845 - 7027 61 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256848827|ref|ZP_05554261.1| ## NR: gi|256848827|ref|ZP_05554261.1| predicted protein [Lactobacillus crispatus MV-1A-US] # 1 49 27 75 86 83 97.0 5e-15 MSNDFCVSPKFKTKKLYALAKDSDACDVFLSFAYGFYAYGYFEQKFNFYILLILIANILT >gi|256541423|gb|ACPV01000051.1| GENE 11 7020 - 7418 412 132 aa, chain - ## HITS:1 COG:SP0889 KEGG:ns NR:ns ## COG: SP0889 COG3654 # Protein_GI_number: 15900772 # Func_class: R General function prediction only # Function: Prophage maintenance system killer protein # Organism: Streptococcus pneumoniae TIGR4 # 2 132 3 134 137 83 31.0 9e-17 MIYLTKTDLIHLNQRLLEKAGKGTVGVQYPEGLDVVVKQPQQILFGRELYPTLWLKAAFI LQKITKKHIFADGNKRTSYYAAAFFLQENGYHLKADKDDALKFILYITNSEDSEENMYFA ADWLKVHCVKIK >gi|256541423|gb|ACPV01000051.1| GENE 12 7415 - 7654 296 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843434|ref|ZP_05548922.1| ## NR: gi|256843434|ref|ZP_05548922.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 79 8 86 86 129 100.0 5e-29 MLQDTTKVFKAGNSLSVRLTKQDLTKFHVEDGTVLEKEYDPNGKKITFKIVDSINPNLDN FIDQFYEENKELTRELENK >gi|256541423|gb|ACPV01000051.1| GENE 13 7774 - 8022 63 82 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVFRILGIGSIFKTKFVNPIGKSSERALSLEKIKNHGNMKVQKKKHLAYAKKLRHTKIAT LSPQMSNDFLFHQSLEQICLML >gi|256541423|gb|ACPV01000051.1| GENE 14 8264 - 8944 456 226 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1758 NR:ns ## KEGG: FI9785_1758 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 12 222 11 215 215 98 30.0 2e-19 MKKKILDKSIGIGQMIVTFLIYAVVQGLFMIRAKQLSWVAVIFIFGLTVALLSLTYGIYQ RRLNQVNDWHFTSYNKTRMPRFTLKNWSLAFLGFLVICILQILAGFLIKGEATNQANIAA HQQQLNPIINVMLIAIGPLFEEIIFRGIFFNWFFSKPGKKSTLFIAVLINGLIFGLLHEP QIDLYTILYSLCGSVLALVYLETKDLTFSYVSHLGNNLAVFLISSL >gi|256541423|gb|ACPV01000051.1| GENE 15 9025 - 11658 2389 877 aa, chain - ## HITS:1 COG:Cgl1793 KEGG:ns NR:ns ## COG: Cgl1793 COG0550 # Protein_GI_number: 19553043 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Corynebacterium glutamicum # 24 796 5 758 759 346 32.0 9e-95 MLCEEYREVFFFVERNSNVTRLLILNEKKSQAEKFADYLGGMSGEFEGNPYDIVYAAGHL LQLNAPNEMVDPNLAAKYADWQNLDNFPWNPLDLNWSKQVIKSKQRYIDNIKSNLPGHDV IIIASDNDPSGEGDVLGWEIVDYLNWQNEVWRIRFKGDDSANYVIDSLHKPEKATVSEQD AQGILVKGKSRQRFDFLTGLEESRIATELAREQGFSNKGKALSIGRLQTYITCLVDEQNR ARRAYVKKPFYEIRYKDANGNTFKRDYQDGDSWRFSDKSLAEQDLVNYATDQIIIDSTTE KRTQPPKLVNLADLGKIFQKEYTTEQITETYQKMYDDKIVSYPRTEDNAITIDDFNELLP YADKIAAVVGIDSKLLSHKDPRKKFIIKSEDHGANRPTKLVPQSLEEVEDKYGKCGRDIY ERVAKSYLAMLAEDYVYTQVKAHIANHPDFTSTINVPKELNYKLIFNENDLNEEKQSENK ATHFTQNASPEVYQGTNTPPTKPTLTFILNNLDKWNLGTGATKMQTISKLQAIGKENKKV IPQLKVVKGVFEVTGTGALIACIAKGTYLSSGKITKRLQDILNEIKADPTKQDIVYSVAE KTIEHDKAVMIENAPLLKQDTQVKKLAGDLKAIERFSGVFTQTNKTVNPPVTIFDGHTTT EVEQQEALEGKQITYSIEKFGKEEQHTAYLAEQTYKSKKTGKEITRVGWKVEFPEDTDHV KGIYKPLAKEIKFKKEYGQHVFSEEEITSLLAGEEISFEATDKQGKSFMATGKLIEQELK EGRRKIRFWGFRVNPKPVDTNVYVVITYKDGKEYHFKKTYRGHRWTPEEIKKIAAGKKQI VAFNGRKGTYRMEIKPNPNKDYKGKFKYFGFDEKFVK >gi|256541423|gb|ACPV01000051.1| GENE 16 11729 - 12166 329 145 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843437|ref|ZP_05548925.1| ## NR: gi|256843437|ref|ZP_05548925.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 145 1 145 145 240 100.0 2e-62 MKEVTRLEDILFNVVRPNKEGELRGLFNSYYVIDLVKPAQLNRIDNLVVIKKKLINYGFD VKKLKYDQASDFITYINQDWIKNYGYVISDKIYQKEKERLENKGIDFYWYSKYLNCNNDQ QLYNYFRKIISQMNKVILESIKQVY >gi|256541423|gb|ACPV01000051.1| GENE 17 12387 - 12716 246 109 aa, chain - ## HITS:1 COG:no KEGG:gbs0472 NR:ns ## KEGG: gbs0472 # Name: not_defined # Def: hypothetical protein # Organism: S.agalactiae_NEM316 # Pathway: not_defined # 16 104 20 108 112 69 41.0 3e-11 MSKNIATVYVRFVQISGGKRRPIFILQENEDKFFFFDITTKFKNKSEKIKKHYFEIKEYE TTGLKKHSWIDTYRRYSVSKKDTNVNYIGRLSDQDTHRLVKFLRKTAKK >gi|256541423|gb|ACPV01000051.1| GENE 18 12709 - 12984 359 91 aa, chain - ## HITS:1 COG:no KEGG:pWCFS103_01 NR:ns ## KEGG: pWCFS103_01 # Name: orf1 # Def: DNA-damage-inducible gene # Organism: L.plantarum # Pathway: not_defined # 1 88 1 88 93 66 39.0 3e-10 MASITKKRIQVQIDDGVVEEGNAVLKKLGLTPTIAITMFYKRLIAENGLPFSTNLTEREK DELEIQNLTKDWATEDLNSPEKLQEWMSKDE >gi|256541423|gb|ACPV01000051.1| GENE 19 13136 - 15211 1623 691 aa, chain - ## HITS:1 COG:no KEGG:LKI_00125 NR:ns ## KEGG: LKI_00125 # Name: not_defined # Def: hypothetical protein # Organism: L.kimchii # Pathway: not_defined # 135 571 306 743 755 159 30.0 4e-37 MSTRSNVSILNPNGSVTTQYFHMDGGLTFTGQNLLDNYRTLDDAKKLIETGNYNDNHIPE NPTAATKLMDEYNSNGQRIDDPARKNYHDLSAMINDISKNDGKYLNSDVEYHYLFSPNAE GNYQWHTINRNGIKPLTQKVIDSEKESGTLADVDWNKSSFTSDWAAPLTDKEISSLNDDI SLQSQYLDRLQKSKPELVSGQVKDKMDMDKNALKSERRPRKTFDRKAWKKKHTQTVEDLK NGLLKEVDNYTQSPEKVIEMLDFMDKFHNYSSRNAMTIQMQRPGATAVGSFAKFKSMGYK VNKGEKGIKIFVPTKATVFYRKNKDGNKELANLKTATKDEKQKIEAGNIETYQKTFYKIG TVFDAPQTNMPKEKYPELYPNRHQDFNMKNPGQIDSLENGLRSVANDMKMPVITYDPFNA DIRDKYKDPQNAKGYFNRATNEIVLNGYNTPTENVSVLAHELGHAQLHNSQKQEKGLPRE FKEMQAELTSYLYCSHYGIDVKQETVDYIANWTSNGQKFNELPSGVKGQILTHVGSATKT LTNSTDKLLEKEQEKLGQIVKENFLDTPEHSQWYVQKEKMEQEVTDNETNGTNFKTELTA LRKIEKSMTIDTVRNLDDAFNKTQCWTADGNYSKLTDNLQNEIEKNQEKSKLLDDKEVQT SKPHVATVNSSLTNEKAKEIAIQKGEQELDR >gi|256541423|gb|ACPV01000051.1| GENE 20 15448 - 16230 456 260 aa, chain - ## HITS:1 COG:no KEGG:LSL_2159 NR:ns ## KEGG: LSL_2159 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 7 257 8 254 256 219 51.0 1e-55 MSEKLDLANFIVSFGSMNDYSSTVLQTKRALDLNDLSKLVHQHHDGAILKDALDGIAAAK KFGFTRQGIIEINKAFTHSEEEDPSIPGRLRHVSYNPDDAIVIITDPKGTAKGAYFAPEN VYPEDLDEIIEQYNSSKQTTKDAWRVFASLSKLQPFQDGNKRTALIAANSARDTWETRDY LTLPFDNIDHAEFMISLMRFYRADTREQEDKALDRMIETLPSKNEVAYHLSNEISQKDID INDLKTKRIKSFYQNQELDR >gi|256541423|gb|ACPV01000051.1| GENE 21 16391 - 17479 1003 362 aa, chain - ## HITS:1 COG:no KEGG:BAA_B0109 NR:ns ## KEGG: BAA_B0109 # Name: not_defined # Def: hypothetical protein # Organism: B.anthracis_A0248 # Pathway: not_defined # 4 362 11 344 344 152 32.0 1e-35 MLAFTKEQIKAANSASIVEYARSAGIALRQTGSDEFKGVEHDSLVITPSKNSFYWNSRQV HGKGALSFSTLYELSGSNLNEKEKFLKAMDKVLTSGAGDGKVYQIKKEPFKFDKNQLDPE SKINRVWGYLHNQRGISSKTIDQLHKDKVLAQDKLGNALFLWLDPQDRRQVKGVSKQGTK INHQKYGRRGTLKMIEKNSTKGYGFSFDSPGMNGKTPENIRFFESPIDAISFFDLSKVKV KGGMKNTRFVSMDGLKKEVFDSYITQTAAQLQKEGRILKSVGLGVDNDEAGKRFVKDIQS KFPKVKYCKPSEKLGKDWNDTLKAFRKMQEGKAQSKETTRTLPGQEFEKRSAYLRRDQGL ER >gi|256541423|gb|ACPV01000051.1| GENE 22 17585 - 19192 916 535 aa, chain - ## HITS:1 COG:no KEGG:BAA_B0001 NR:ns ## KEGG: BAA_B0001 # Name: not_defined # Def: hypothetical protein # Organism: B.anthracis_A0248 # Pathway: not_defined # 4 401 5 416 518 185 34.0 4e-45 MGRPAIILTSKFSVPSSRKAFGRYVGYIARKEALEEKEFLTAEEKDELSRVKKQVRKLNQ ENNFTRVKSEEHSEREAAAEKLMEKRNFFDLNDKEFDKYLGYMVRIDALNQKKNETGLNT KEQTELERIGQAASKLSEIHPTKEKVLDGVFSSDKDIVQLKDLDYIREQLNEGQENNSVL WQDVVSFDNSFLKKKGILSSTTGILNEEELQKATKKMQSIFQKEMDPPLNEMYWVASIHR NTDNVHIHIATVEKDPRRKIINREGISQPKGRRPQKIIDHMKSGFANELIGSSEMTKELS QRRQAIREAIQVNLTSQVEQPTFQAEINQFVRALPESRREWFYNKLDKSQQKMSDHLVDE LLKDNSDFQRYKDLVWKMQDDRQALYGKSKRENKNYAINQLYGKEGIYARNGNALLADLR KIDKEANHNQRHRISFKDKVDPNDYIQSALKEIRKDAAEQKSKLDDSYRPHLRAKSKKSF KRHNYLKKPFISQSQIRKIKSNQEKVFEKINADKETKKNLREFEKLQNEVEQELE >gi|256541423|gb|ACPV01000051.1| GENE 23 19296 - 19655 327 119 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843444|ref|ZP_05548932.1| ## NR: gi|256843444|ref|ZP_05548932.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 119 1 119 119 191 100.0 1e-47 MIKTTFRATISDTDLDWIQDYKEEHDLKNNAEVIHHLMKLAEENEKNSKWTKDLSDIRKQ QRFTKEQVAILTEMVSEFLMTQGMQIVGNGIDAEVYKSAKRKVKERINNRMEENGGQLE >gi|256541423|gb|ACPV01000051.1| GENE 24 19670 - 19897 285 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843445|ref|ZP_05548933.1| ## NR: gi|256843445|ref|ZP_05548933.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 75 1 75 75 109 100.0 4e-23 MGRQHFLQFRLNDKQWKEIRQIRKEHCFDNNGQLYKFLFFNAMLGVQKEKELEELQKINQ KIDNALKKRQETYAD >gi|256541423|gb|ACPV01000051.1| GENE 25 19918 - 20250 349 110 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256848841|ref|ZP_05554275.1| ## NR: gi|256848841|ref|ZP_05554275.1| predicted protein [Lactobacillus crispatus MV-1A-US] # 1 110 1 110 110 151 99.0 1e-35 MVKVLIRGISEQNLARIDRIVNQLNQNSSKKISRNQFLREQIEQIPINFQNQNEDSQTSL LIQKQNKLLQENLLGLNVLAKYFISGDVNDTERALNLLDSLSEDTAKEDD >gi|256541423|gb|ACPV01000051.1| GENE 26 20597 - 21466 798 289 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843447|ref|ZP_05548935.1| ## NR: gi|256843447|ref|ZP_05548935.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 289 1 289 289 471 100.0 1e-131 MIQSKNKNELKRHQKHKYRKIYLSFIGVVAAIFIAIVASPYWTGKSIDTEQTVNVVTGNS SFYLANSIYNKQSGKMLLEYYLGDSTDVTSTSDDSDLSNLKYATRVVNMSRGGEDGEELA IKSQKINNHFLVIEVSGIKNGFGDLKIDILPQKINKRVNMQDFSENNYIEFFIKENKVDL TSSKVTKSYQNYILDYRQYLINWNKKKISQEQNTIKDAQATIQNSQNNLDSAKAKLEKVG DNQKENYRTQISSLENDISENKAAITQSQQAISKYEDTIRDIKDGDFDN >gi|256541423|gb|ACPV01000051.1| GENE 27 21478 - 21726 241 82 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|262046572|ref|ZP_06019533.1| ## NR: gi|262046572|ref|ZP_06019533.1| predicted protein [Lactobacillus crispatus MV-3A-US] # 1 82 1 82 82 115 96.0 6e-25 MSSRVVYQSEKTKLKKSNHRLKLIALALFLLSAAQLMATVYFNRDNPDSESQRQIRDQQE QITELKQELNDSKNYRVHSDDN >gi|256541423|gb|ACPV01000051.1| GENE 28 21729 - 22130 194 133 aa, chain - ## HITS:1 COG:no KEGG:pWCFS103_28 NR:ns ## KEGG: pWCFS103_28 # Name: orf28 # Def: hypothetical protein # Organism: L.plantarum # Pathway: not_defined # 27 130 23 120 122 84 40.0 1e-15 MQLKKSNRTKIIATVLAMIFLFVGGVFAFNQHVSHVLNQKDIVKIKTNNESTVLFYRDDC GSCRSIFYYTVMKRDLLRKNIQLVNTNQPKNRHYISEYKLIEVPTFIHLKYGKIAERYSG TNIEKIDQVIKGD >gi|256541423|gb|ACPV01000051.1| GENE 29 22133 - 22774 651 213 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843450|ref|ZP_05548938.1| ## NR: gi|256843450|ref|ZP_05548938.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 213 1 213 213 355 100.0 8e-97 MKKKYLLGGAVLGIILELGVIGYETNEQKAIDYRVDQARAELSKKQTELKNLDSNIANSQ RKIALKQGGNQEQLAEQEVAQAKAKKQVRKLFKLLYTYDSGDEKLKIPDKIKKTNLVDEH ILKTNSMFQNNKQLELQYSGVDMTGQIDELDLKAGILESNKIPVYVKVYFEMTKEGRTLG TPTDGYELIYDAKAEQITSIEYLGRYQVDREAD >gi|256541423|gb|ACPV01000051.1| GENE 30 22777 - 23349 354 190 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843451|ref|ZP_05548939.1| ## NR: gi|256843451|ref|ZP_05548939.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 190 1 190 190 332 100.0 5e-90 MKQRTKERESNLKVWTMTATAVVIVLGMFALNRIPKNDELNEIRSEIQTVNKQIDQERDS QIKNSAYKQKFDVIGAEKEAQARFLKVIPNIYTKRKLSNQAKEFDAWKKILPGRAGEKFI RYYGDSMGYLKNKSTMIYFGNLTNVNHTKVTVIDVAISKNKKEITNGWEFDYNLRTQKIN SFKEISIEGN >gi|256541423|gb|ACPV01000051.1| GENE 31 23370 - 24830 1689 486 aa, chain - ## HITS:1 COG:no KEGG:LSL_0796 NR:ns ## KEGG: LSL_0796 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 234 450 289 496 616 122 37.0 4e-26 MITGIKRLRQTKRWAGLAAFLLGILAVLSVIYFIVILIAAMGAATDDECDTGGEQGGVVE GRISVIESPKYGQTAMMHIADAVHEKTGISARLLFAQMGQETGNGDSSVAKHDHNFGGMT YSEGSTIGTKGESRGSEGGNYVHYKNLSDFATEWAVTVQNGFKKAGLGKDATVAQYAHAM KKAGYYTAAESDYQAGMEAQAKKYDALKGNKSLAKGDGSSGSDNSAEEDCKPISGKWGWP FKSIPKKGPGNTISGEQLFGKSSTRTGGFHDGVDFGTVPYGGQDILAIHGGTVKKIAFQG HTQDGLGMYVWVEGSDGWNVIYQEFGFDEADLKYVKVEVGDKVSVGDKIGHLASNAHGIT HVHIGATEKDFATAELSAYKDDGTWKDPIKLIKDGLNNDAESEEDDGLSKTESEARDWIV QRESGGRWDATNPTNPSVYGRYQLKREYLKGDYSHKNQTRVANKYVKDRYGSWRNAQKFW KEHNWY >gi|256541423|gb|ACPV01000051.1| GENE 32 24830 - 26839 1597 669 aa, chain - ## HITS:1 COG:MYPU_3830 KEGG:ns NR:ns ## COG: MYPU_3830 COG3451 # Protein_GI_number: 15828854 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB4 components # Organism: Mycoplasma pulmonis # 224 650 452 837 853 90 24.0 8e-18 MRISSLLKTKRHKKKKVTVKLNPRQVTSLKKQRELLKNGYNTKFLAEVQPQGGITFADNY AIASDGYAACLSVIHYPNDPLLLWLTQVALNDSTLTTIDVKTDSGYEIKRQLNRSIEELA DRQVNARKATDALNAQKDMQSLEKYALELSQGGEIPKLMLTRIFVYAPTIEALDQSVSNL RGKLRGEGYNVAVYMFMQDKQFKSMALPITEQEKDLAALPEQPIPALTVGAGDPFSAQSL KDPRGVWLGRTSTGGAFYFDQFRSTNIRRSFNMMILGKMGAGKSTLMKMLVEGTIARNMY FRGIDKTKEYIPLIKHYGGTVVSLDGSEGMINPLEVMATTVDENTGKVDELASFYQHISK VDILFQMINKGSFVNIEMQEFDSLLRGFYVDMGLLPRNFQQNKGNIKITNLDSEKYPTFS QFLNWLKKLATPMYYQQHQFTAERIRTYEKIKVALESMIENYGQLFDGYSTMRDLTDTKL LLFDSSAISTMNQNVYQAQLYMALSLIWSHALINGRKQNALLKAGKITRQDVQYFDVFLD ECHNIINYENIFAVDYVKNFEREMRKFNAGIIFATQSPEEMVPDSVESAQLSSLKVVFEL CQYKWLMSMDPSQLKKIKSLLGEALNSSDYSNIPDLQTGQAIVTMGGRERYQVKMKPSER QLEIFAGGQ >gi|256541423|gb|ACPV01000051.1| GENE 33 26850 - 27473 470 207 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843454|ref|ZP_05548942.1| ## NR: gi|256843454|ref|ZP_05548942.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 207 1 207 207 364 100.0 2e-99 MRTKRKSRNSRSKAPSLFRAFGLDKGSRQDARDQSIVEYLGYSNCSKDGILDLVDGTQAR YLRVHSTDLYSLDDETRSKYLDSFTTFNRIYSNDYKIVVMSTRIDTSEQQQYFRHLKNGI RSPKTRYEKMRLRLVNEMLLQSVMLSRNTEDYSDVQFYIMIFGEDLHDIRVNTRTAQFAD QGLMGLRPLDYEETVKVLFRENNLNSK >gi|256541423|gb|ACPV01000051.1| GENE 34 27451 - 27777 276 108 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843455|ref|ZP_05548943.1| ## NR: gi|256843455|ref|ZP_05548943.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 108 1 108 108 200 100.0 3e-50 MDKYQKIMIPKSTNVSIQIFFLDMFDVFALFIGGMAGQQISFLFNLQPTWQLVMTGFGVV VGILLVMRTPLAPKIRNYRVLLSIMRQDQSRYYPLFLEGENNANKKKK >gi|256541423|gb|ACPV01000051.1| GENE 35 27781 - 30495 2644 904 aa, chain - ## HITS:1 COG:no KEGG:BAMEG_B0010 NR:ns ## KEGG: BAMEG_B0010 # Name: not_defined # Def: hypothetical protein # Organism: B.anthracis_CDC684 # Pathway: not_defined # 42 891 54 881 952 178 25.0 1e-42 MTNWLFYLTSFINPKYLDIFSSLVDWWQKSTNSGDYDPAKLQKVTEALQNAAPYLHYDDF LGRILNQTKWGIVKIFYGFANWASELATDSLDFSGILKSTGLNTNLINGVMGIAAGLMIL TLTWVGIKIGTSSKAPQLKNVVWQLAISAFLIGNIQPITNWVVDQSTGVYKGFVQADNDK GTSSLPYQVVQANSNDLLAIIANNFSGFKINNGDTNTKWEGVSKDKNGEIKDQRQKDVHY GSFAMNKSDFDTATSGDLSTTISADLAEKLSNKANKSKEKPAWDPDNLRYKLAPTGVGTK SNVKGKAYSGYYATKVSQSNTAFFKIFNGGYERYSVQFFPVVVALFSMTVAFLLVCFVSV RAFLELAIMQVLSIIIFSTDLETGKRTKAAVQDIFSSALLIAFQGFELAFYRIVAVWMSS SDAGKIHDNPYLYAVGMIALTWALWEGSSKVQKFFGLDTGLKQGWSKVAGGIAATEYIAG KGKNLAEGAVGVARGSGKLAGAAIGEAQAWQAGSSTKAIAKENGASNSEAKQAGSYARRA FRSAHNDFKQNGGSAVDWNRAVNSGAVSETVQDEAARMMRNGGLTDNQYNTLHHNPYMQN RAEKNGGSAEPTGIGRDTSFVGNPNYDGKKETVATSNVDSAKNVNDQGKNTSVKPDNIQN QGIKTDDSKPKSNAAKESSTDGSIKSTGGAKTIGNDAKIPNTTVSEATNGSKTGKKETAN DPRTNSASVTGSGSKRGEANSSSSSPTSSNAVDELPSLRDTQKSTSELASQQRSNQQTTP PKPVGEGGRHLSNVSDFKGQDSHSKVTETAGTNHVDIERKAGRTEVSTHDVGNQGMSSVN DAMKSSVPSNTNRTVETQGNTNTVTEIKHDKTTINQQVENSTETKSPSSTNIGKLGHGDS RRKD >gi|256541423|gb|ACPV01000051.1| GENE 36 30540 - 33152 2110 870 aa, chain - ## HITS:1 COG:no KEGG:pBT9727_0014 NR:ns ## KEGG: pBT9727_0014 # Name: not_defined # Def: conjugation protein # Organism: B.thuringiensis # Pathway: not_defined # 54 726 109 777 877 465 39.0 1e-129 MWLLGAFHNVMLQTKSKNYNLFTNGLDLDKAGLAGLNFFKTQLKPMEILEVFAASVIIGG LLSQKFHFESQKVAHGQKGNARFTTVKELEDTYVKVPDHSQPGLDPKKPSFKGFGGFPIA HINRLGLTKKFPFITKHGYYFIDTSTVHNLIVGTSRSGKGETTILEQIDLVSRAEKQSSL VVNDPKGELYVASVNTLRKRGYDVYELNLDDPNKGIAFNPLQLIIRSWEQGDVEGAMQLV NSITYSLYFDKQAGQNKWVNDDAQSAVNGMIIALIEYCMNPKNFRDKKAHLEYITFVNIA DLVNQLGQIDYTNPSDPYTQHNVLSEYFKHLEQGSIAKKEFGSTNFSGDKARGSIFSTVV QKLDIFTLPKNSRMTSMNTLEMKSIGFPKYLEFQLLDQRLYGELIKINFRDNHNKKLKTN EIRVSQKGFVENNFDVNLKTGSFVEIEAITGHKRLKNTFKLKINPKVKKVEVSQVGKPEI KMENFKMHYSDKPIAVFMKIPDSDASNNLLATIFVNQLYTELSRQCRLVQGGSTIRRVQC IFDEFGSMIPLQNMDRIMTVSAGRNILFTLVIQSYAQLYSKYGKEDGQVIKENCQNKCLI MSTDSATNKEFSEACGNKTIETSNISKDQNGLAKNVSVSVDKVPLILPERLEHLAGGERL VLRPLTRMNKWGWAVVSHPIFNTGKTLMPFAHTFLTDDFNPKTNPDLVEKIDAHANINLK ALEIDWSKWLTWTEQVTKQDEDGNVFVEEENLALQAYNQYRQSDANVQAAAKDAKEEQEM KKSLKEEENQIPPFITNWLTEHDGDISDGTKQAILNEAIKLKDVPEGQKPSSIAFVNIIY KDKKLEDKNKEKNELTQEFSQSFNEYYQDK >gi|256541423|gb|ACPV01000051.1| GENE 37 33346 - 35682 2233 778 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256848853|ref|ZP_05554287.1| ## NR: gi|256848853|ref|ZP_05554287.1| predicted protein [Lactobacillus crispatus MV-1A-US] # 1 778 11 784 784 1121 98.0 0 MLLVTFDKVPKGAKKYFQFKHKLSRKSPELDIKTADDAVKDYAKSLEEADSNVTFTIFDD EDEDREESSFEAQILPEDQDGGILNLIDRDLENENLTRDQEETVTTLKDQIFNELEPSLS DDEEDLNKDNGFMFNNNQILDSDDEVRDEIPPENDVNDETEDNSPTEESNSNAATNPSLN NVPTQLPEEVDALPIQAGQTTETETSRSEVISYGKYTDANDILDRLPRGYDKNQFALNNI RHDLGYLDNPKDQYDQALNDKIDQALRDYSMQDIQRVYDEGLAKSKAAIVDRLKEAYNRV TKESLDKIVEDRTAAQIQQLVVKATHQKQNNQSDLSKLKENKALELKTNDEAALAEYKKQ LEEKRNIALKNFNDQEELKTRNANEQIDEQLKADKAKVERVARDEEVQKRNSELDDSRTT ISNDFDHAVRNNYDKNNDLFEDNLKKVQEKVRLAKEQINQQKLLDQEKAEEKRQREAEAA RKERELDLKQKAIEQNESLAKLQQENMAKLPEKFAKAIAAAITQNNLENPNVKITLNNDG KNALVPVPHVDGEVVDLDDTKKNDAPIDSESNEEDSELKPETEDNSPKKRHYKSEIISLV CLAAAALGGTWAYTNNHSNNEQKASIERSSSNSHVKKNKQSSSKQSDKKSANEDIAKNKK PNAKSKTKSTPTHLTRSQAVLKQYRETKTWAQKRDMLDGLLGQGDARNLKKIATIYSNPI ASLYSAIANEDKAQTRDIWLSLTDDQRTEISNSAKKAVALAFYDIADWQDGWLARYAY >gi|256541423|gb|ACPV01000051.1| GENE 38 35757 - 36089 472 110 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843459|ref|ZP_05548947.1| ## NR: gi|256843459|ref|ZP_05548947.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 110 1 110 110 181 100.0 1e-44 MFLAVYTKLTYLFWSGLIGTQAFLNEHPVLLSVWSNINKATGSTEKNLKSIAKGLFIVVI ILAGILFAFGNRMSQNAKQLLMYALVGVAIVALAASLVPSFANMFGWNAR >gi|256541423|gb|ACPV01000051.1| GENE 39 36132 - 36428 303 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843460|ref|ZP_05548948.1| ## NR: gi|256843460|ref|ZP_05548948.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 98 1 98 98 144 100.0 1e-33 MVLSKQDKSILRKLHNSQGLTQKAWEEKIMVEFVQDLISGTKSAYKDAVLEVAGKKELSE QLEKLQIAEPDKTLNDKVTSSKDDNKPTSDFNGTSKSI >gi|256541423|gb|ACPV01000051.1| GENE 40 36523 - 38745 2617 740 aa, chain - ## HITS:1 COG:no KEGG:EF2525 NR:ns ## KEGG: EF2525 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 38 695 45 616 657 137 27.0 2e-30 MISLTKKNKVVSLAAIALMATGFSLGTFLATRSGIVHADNAEMVNLPKGQNAVGTKMAGS YAFIPKIIQGVTKIHAFGGASQDWATSSTNTEDKHHSWYAFSVMGNEKLAGKIGVYYSNT GVDPNSGKTIDVKITATDWNIQSYKWQDTSDGKREKVPLKNPTIAFGVSPYFEVFTPGQG AVAYRIDFIDHDTGKPLKLNLNQSVRDIDGNQWVGYDTSTYGKIDQVIWGDGQKDGNTWL SYKNTLGNNYIFSDANQHHTALPDGSGTVRSSDWKAAYTATMSNTDHINMYWVFGTTTGK HAAENQTEIEADTDNWQLNQGKYDPDAGMTDKDKVSISNSIWNGTFNHAYLRLFDMPIVK DKPMNPNKYVSDKDEGTDTPSEVGGIKSVTHDMLDNRYEQYHYQITHSVPDVEKRLKYTE YRITDNLDNILNIDTGSIRVYNRANQDVTHNFTVTLSSGNNLSVIAKSDALAMDDFYNET YKITFDATVKRGESLKDHADPKHKDQAVIYNEAKVIQDNGSADSNQVTTNIPFTNPKDEK FVSEDGLADSKSLRDVDFGKKYTYRVEATVPDNVNVDSLAIKDAIEADVQNIKSVKVYDY DDKDSAGKAKEITDQGKLDVNNKTGKISWVATEPGKWHGKHLKMFIDTTLINTPKLLDYL NKDNGQIEVPNQAHFLFNNEDLPSNITHVSPKTPKASAEKKIEVSGDYTSEDVDPTGDGD KNKNTDKDNKRETEDLPNHD >gi|256541423|gb|ACPV01000051.1| GENE 41 38832 - 39962 1017 376 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843462|ref|ZP_05548950.1| ## NR: gi|256843462|ref|ZP_05548950.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 376 1 376 376 571 100.0 1e-161 MKKRLLVSLSAAAVLSVSSVALVNNNVENTPTVVQAATYKKKLTKNAYIYNAKGKRVGKK VLKKGKLVKILGRKTIKGKKYYKIGKNKYVRTANFVVKFASTNTSSTSSYNTGSSSTTNN GFTKSSTKGEFPTSNSVHAKTSTSSTTSKSSSSSKSSGINTNSDDSGVRYNTKKSSLVDG PMTAESEKLARKKMNVYVYFTDTEVQQIEDRLWQDIQNYRVSKGYPAFKTSSELTNLAQQ AQIPGTREFSRFSDTISQNINEIRAYLPGLTKLGMDQAVGYVDSTIYGLNHKGFVIGGDF THKGWKPVQVADKLFDMMKNSEGIEPRVLYGWKKHNAYAALSMHYYWDGEGSSVGISFFT ADGTSPEWVSAWNNAN >gi|256541423|gb|ACPV01000051.1| GENE 42 40056 - 43067 3131 1003 aa, chain - ## HITS:1 COG:no KEGG:MCCL_plsB0065 NR:ns ## KEGG: MCCL_plsB0065 # Name: not_defined # Def: hypothetical protein # Organism: M.caseolyticus # Pathway: not_defined # 294 985 407 1105 1111 167 27.0 2e-39 MKKLSKKQTRELLSALGVTATLGSVGVGVAVANHNANPNIVKADATADVKYVSDATFKKG SDIAFDIYYQVPYNADLKKLVLFDKLEPVFTHNKTRVFDGNTDVTDQFTADFDKGTNTTN MTAKKPQDWLGKKLSMRIETTLQKNANLDRYLDKNTNQYNIPNVGQMIYNDEKIKTPPVY VHTPNDEEPTAIKQVEDKNGQYGEKAKHDAGDEFHYRVQYSIPENGKDISNVVFYDDLEK VLDLEDVKITDDKGNEVTKEGDLKLDKDKESFTWQPSKEYLTQMPKHIYTADITVKLKTD ADLSGYLNKATKNYEIPNVAHMKYNNKDIPSNPVKVETPPPAENKVVKSVQGLSGSYHED KDNVEVGKDYTYKIDYTAGEGQHLTDVEFTDKLEDVLDLEKVVVKNADGKDITTEQGTLK LDEKNESFNWQPNADLVKVMPGKKYTVEVTAKVKDNADLQKYIKNNTIEIPNTAHFKANG KDTPSNTPVVTPKVEEPKTHKGIVKNPSDWAKFFGNKSETSSGQQSDADGALPKDYQKAQ EYVKVDPNTGVWSKANDKVTDKQYEEAVKILQTPYKNPVKSSSQNASEVTTKSPTSKEDL KEIINSSTVDSNQASRGDAVDYLLTFDIGNSQNMKSLVLSDDLENVLDLKNVVIIDSDGN NVTNEGKLVTSDEDESFTWTANDPAKFSRKKLYVAIASNIKPNADVSSYDNSGIPNTGHM QINGQDTPTNVVHTTLNGDPKNPEDPKKDKPNDPSKPDGKTPDPYGNLVTKQVKAESGQW GESDKVQEDKDFDYKVEYTVGDKQDVKSVEFSDDLEDVLDLEKVTITDADGNDVTSQGEL TLDKNTEKFSWKPKADLVGKMGGKKFTANITAKLKKDSKVNGEVPNTADMTVNGKDVKSN TVNVIPPQADKKSPSNVNNPKNPTNSTENPNNPNNPGTNNPGSNNPITGKNGFLPRTGHF ILQHAGWIIASLVAMAGGIGTYLYKTNDEFKNKIKGLITKITK Prediction of potential genes in microbial genomes Time: Wed May 25 05:24:58 2011 Seq name: gi|256541422|gb|ACPV01000052.1| Lactobacillus crispatus 125-2-CHN cont1.52, whole genome shotgun sequence Length of sequence - 38509 bp Number of predicted genes - 48, with homology - 46 Number of transcription units - 26, operones - 12 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 25 - 600 646 ## gi|256843464|ref|ZP_05548952.1| conserved hypothetical protein 2 1 Op 2 . - CDS 575 - 1327 600 ## COG3764 Sortase (surface protein transpeptidase) - Term 1333 - 1368 0.2 3 1 Op 3 . - CDS 1383 - 2600 1424 ## LBA1235 putative lactocepin S-layer protein (EC:3.4.21.96) - Prom 2663 - 2722 3.9 4 2 Tu 1 . - CDS 2724 - 2975 203 ## gi|256843467|ref|ZP_05548955.1| predicted protein + Prom 3209 - 3268 6.5 5 3 Tu 1 . + CDS 3438 - 3650 118 ## - Term 3634 - 3678 -0.6 6 4 Tu 1 . - CDS 3819 - 4202 339 ## gi|256843468|ref|ZP_05548956.1| predicted protein - Prom 4268 - 4327 4.8 - Term 4484 - 4518 1.3 7 5 Op 1 . - CDS 4630 - 5010 257 ## gi|256843469|ref|ZP_05548957.1| predicted protein 8 5 Op 2 . - CDS 4991 - 5473 590 ## COG0629 Single-stranded DNA-binding protein - Prom 5507 - 5566 7.5 - Term 5574 - 5605 2.5 9 6 Op 1 . - CDS 5668 - 5973 118 ## gi|256843472|ref|ZP_05548960.1| predicted protein 10 6 Op 2 . - CDS 5970 - 6239 164 ## gi|256843473|ref|ZP_05548961.1| predicted protein 11 6 Op 3 . - CDS 6256 - 6642 216 ## gi|256843474|ref|ZP_05548962.1| predicted protein 12 6 Op 4 . - CDS 6645 - 6872 202 ## gi|256843475|ref|ZP_05548963.1| predicted protein 13 6 Op 5 . - CDS 6865 - 7182 273 ## gi|256843476|ref|ZP_05548964.1| predicted protein - Prom 7257 - 7316 9.4 + Prom 7109 - 7168 8.6 14 7 Tu 1 . + CDS 7315 - 7914 583 ## gi|256843477|ref|ZP_05548965.1| predicted protein + Term 8135 - 8172 2.4 - Term 7849 - 7899 7.4 15 8 Op 1 . - CDS 7911 - 8291 394 ## gi|256843478|ref|ZP_05548966.1| predicted protein 16 8 Op 2 . - CDS 8375 - 8719 339 ## LGAS_0577 phage related protein 17 8 Op 3 . - CDS 8722 - 9414 304 ## gi|262046666|ref|ZP_06019627.1| predicted protein - Term 9482 - 9530 -0.2 18 8 Op 4 . - CDS 9533 - 9778 94 ## gi|256843481|ref|ZP_05548969.1| conserved hypothetical protein - Prom 9878 - 9937 12.3 + Prom 9861 - 9920 8.6 19 9 Op 1 . + CDS 9956 - 10309 408 ## COG1396 Predicted transcriptional regulators 20 9 Op 2 . + CDS 10325 - 10729 333 ## gi|256843483|ref|ZP_05548971.1| conserved hypothetical protein + Term 10768 - 10802 0.3 + Prom 10784 - 10843 8.0 21 10 Tu 1 . + CDS 10874 - 11959 538 ## COG0582 Integrase + Term 11999 - 12035 4.1 - TRNA 12033 - 12106 71.7 # Arg TCT 0 0 + Prom 12172 - 12231 11.2 22 11 Op 1 . + CDS 12263 - 13159 893 ## COG0657 Esterase/lipase 23 11 Op 2 . + CDS 13172 - 13528 286 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Term 13529 - 13590 15.0 - Term 13521 - 13570 11.1 24 12 Op 1 35/0.000 - CDS 13574 - 15154 167 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 25 12 Op 2 . - CDS 15154 - 16734 178 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Term 16841 - 16886 1.5 26 13 Op 1 4/0.000 - CDS 17068 - 17562 486 ## COG0561 Predicted hydrolases of the HAD superfamily 27 13 Op 2 . - CDS 17572 - 17883 256 ## COG0561 Predicted hydrolases of the HAD superfamily 28 13 Op 3 . - CDS 17943 - 18260 268 ## LCRIS_01360 putative protein without homology - Prom 18281 - 18340 4.8 - Term 18334 - 18369 3.4 29 14 Tu 1 . - CDS 18382 - 18642 275 ## LCRIS_01361 putative protein without homology - Prom 18670 - 18729 5.8 - Term 18719 - 18759 3.9 30 15 Op 1 1/0.000 - CDS 18765 - 19232 423 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold 31 15 Op 2 . - CDS 19229 - 19624 235 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold - Prom 19767 - 19826 9.1 + Prom 19487 - 19546 5.0 32 16 Tu 1 . + CDS 19770 - 22151 2348 ## lhv_1436 x-prolyl-dipeptidyl aminopeptidase + Term 22171 - 22217 12.2 - Term 22159 - 22203 8.0 33 17 Op 1 . - CDS 22208 - 22645 524 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase 34 17 Op 2 . - CDS 22661 - 22942 357 ## LCRIS_01366 hypothetical protein - Prom 22977 - 23036 8.3 - Term 23008 - 23042 2.1 35 18 Tu 1 . - CDS 23069 - 23932 1063 ## COG4975 Putative glucose uptake permease - Prom 23968 - 24027 7.5 - Term 23952 - 24004 -0.8 36 19 Tu 1 . - CDS 24077 - 25603 1005 ## COG1620 L-lactate permease - Prom 25803 - 25862 8.3 - Term 25798 - 25846 5.2 37 20 Op 1 24/0.000 - CDS 25867 - 29055 3629 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 38 20 Op 2 7/0.000 - CDS 29048 - 30133 1019 ## COG0505 Carbamoylphosphate synthase small subunit 39 20 Op 3 15/0.000 - CDS 30133 - 31410 1298 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 40 20 Op 4 8/0.000 - CDS 31410 - 32366 925 ## COG0540 Aspartate carbamoyltransferase, catalytic chain - Prom 32414 - 32473 2.8 - Term 32378 - 32417 6.2 41 20 Op 5 . - CDS 32507 - 33049 707 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase - Prom 33154 - 33213 3.8 - Term 33068 - 33107 7.5 42 21 Tu 1 . - CDS 33218 - 34141 1121 ## COG0167 Dihydroorotate dehydrogenase - Prom 34188 - 34247 6.8 + Prom 34162 - 34221 8.1 43 22 Op 1 9/0.000 + CDS 34392 - 35096 670 ## COG0284 Orotidine-5'-phosphate decarboxylase 44 22 Op 2 . + CDS 35098 - 35736 712 ## COG0461 Orotate phosphoribosyltransferase 45 23 Tu 1 . - CDS 35803 - 36024 102 ## + Prom 35762 - 35821 4.9 46 24 Tu 1 . + CDS 35984 - 36334 249 ## COG0038 Chloride channel protein EriC + Prom 36478 - 36537 8.9 47 25 Tu 1 . + CDS 36605 - 38107 1294 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 38117 - 38164 8.2 - Term 38107 - 38150 6.5 48 26 Tu 1 . - CDS 38160 - 38453 325 ## LCRIS_01379 hypothetical protein Predicted protein(s) >gi|256541422|gb|ACPV01000052.1| GENE 1 25 - 600 646 191 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843464|ref|ZP_05548952.1| ## NR: gi|256843464|ref|ZP_05548952.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] # 1 191 1 191 191 366 100.0 1e-100 MLEAPLIFRKENVMAKQVFVDFELPEAMLADTNKIIKERFPAWLVDRKDNRVASVRILWA GWLFLKYSEGLASKYDGRFPYVAYTPYTAVDRPYAFQTVMLESEYIDAMERMSRLYPDVF EDKTKDKNYFLAILGYACLRELYDNNIELHYDTEKANDLADSENAQLDYAWLEDGTNKPF SIKIKQLSKDK >gi|256541422|gb|ACPV01000052.1| GENE 2 575 - 1327 600 250 aa, chain - ## HITS:1 COG:L125196 KEGG:ns NR:ns ## COG: L125196 COG3764 # Protein_GI_number: 15673095 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Lactococcus lactis # 4 249 33 278 287 98 30.0 1e-20 MKIKKSRLAINQQRKSDKKKKIGTIVAIVALILIGVAIYCIANFNHLQGKAANYVATNHL SSQRKNKQKKKPSFNMKAVQPVSPQSLANAYQHRRDYRAVGQIAIRDHNVLLNIYRGVGN VELNLGAGTMNQYQRMGKGNYALAGHNMDDGRSFFSPLYTAKVRGNLPNGTTILLTDYKK VYYYKITSSRFISVYNLRLAWNNKEFKKKPVISLFTCDWTGQGRLFIRGKYTGSEGYKGA SKYVRGSFDF >gi|256541422|gb|ACPV01000052.1| GENE 3 1383 - 2600 1424 405 aa, chain - ## HITS:1 COG:no KEGG:LBA1235 NR:ns ## KEGG: LBA1235 # Name: not_defined # Def: putative lactocepin S-layer protein (EC:3.4.21.96) # Organism: L.acidophilus # Pathway: not_defined # 29 166 33 172 180 71 36.0 6e-11 MFMKKNVLVSLSVATLLSVGAVGVNEVNGVANNTNVVQAAVKNGKLTHNAYIYKSNGNRY GKKVLKKGKTVKILGTKKIYGKKYYRIGKNQYVKVANFAKKVSKANAVGGQYYLTHNAYV YNAEGKRIKGADTLKKSHIFTVVGTKTINGENYLFLGNGQYVKAANAQSTSAEGANNQVN NNATDTAVGNTTDKSTSNSNNSSENKHNSSDSKSAAEKAGEKGYIYFTDDQVAQIQSYLW QRINAYRQSKGYPAYKTNPELTSFVNRVMQKGTPEYNVAGYGNGTIQNTDTLGQFLPKLK ALGMDSARSMTDLDAFAYGNLKQWFLDLKAKDPKKVADEIFNVYTKQEDGMDLRTLEGHK DKYAYAALKVKYNGEGDYIDHCLELNFTVVGSYSPEWIKAWEAAK >gi|256541422|gb|ACPV01000052.1| GENE 4 2724 - 2975 203 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843467|ref|ZP_05548955.1| ## NR: gi|256843467|ref|ZP_05548955.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 83 1 83 83 138 100.0 1e-31 MNNFDYVDRLVNVMKKLDVTRLTADEYVRYRNQLAREYPKDFTPLRQKETLALRALLSRK NDQVKLSFTYDRFGRCTQEYILK >gi|256541422|gb|ACPV01000052.1| GENE 5 3438 - 3650 118 70 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDGYLHLGRCDSFFFHPLCLQFSVLQILLSRLNSHAHVLHPLQSIVDAYSVFNVLVDCLP VLKEIAELNS >gi|256541422|gb|ACPV01000052.1| GENE 6 3819 - 4202 339 127 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843468|ref|ZP_05548956.1| ## NR: gi|256843468|ref|ZP_05548956.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 127 1 127 127 208 100.0 1e-52 MYKLITVAVGIYIVYYVWRAYSNMKNLKKNMDDNPKELLIRYDSQINDLRKQLTEVNETI ARNQGFPPSFSVNRGLKKAKKQQEKLLQRITQKEVARSNYLKLLRSYQEGKIDKAALKKW VNENQRR >gi|256541422|gb|ACPV01000052.1| GENE 7 4630 - 5010 257 126 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843469|ref|ZP_05548957.1| ## NR: gi|256843469|ref|ZP_05548957.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 126 1 126 126 229 100.0 3e-59 MLIYHFNKDNAIGEYWMTKKSVKNRRFSVFRVEKEVYEILTIDGYHYWNIDGLFIKNPKN FLSLKSYKYNTGYKKVTFYRVSEIYDQIYLGFGFEVNPKLGHRRLLCKRKYPESHHRKKP LIDVSK >gi|256541422|gb|ACPV01000052.1| GENE 8 4991 - 5473 590 160 aa, chain - ## HITS:1 COG:SP1540 KEGG:ns NR:ns ## COG: SP1540 COG0629 # Protein_GI_number: 15901384 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Streptococcus pneumoniae TIGR4 # 1 160 1 156 156 60 29.0 9e-10 MINQVVIDGYIGKELELKTTQSLKKYVAFTICQNRYSKIQQDYIGEWHHVIAWNKVAENL VAKVHKGLKVILAGEQRTRSFIDKNGNKVAYEYIWVNSFDVLTSQNEESTKAIPQNSNQA NDEEPEADRTIVEANKKDKLAEEPFGSQKEVQLTDADLPF >gi|256541422|gb|ACPV01000052.1| GENE 9 5668 - 5973 118 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843472|ref|ZP_05548960.1| ## NR: gi|256843472|ref|ZP_05548960.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 101 1 101 101 196 100.0 4e-49 MTKIIRLHPYGSEQLPILGMNEMDLEIDDQIFMSMYHEYLAQGGTEKDFKEKQAAYISQA MSGLESLVILRIQAINRLLTIKTIFDIINKQGLCNCPCLAS >gi|256541422|gb|ACPV01000052.1| GENE 10 5970 - 6239 164 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843473|ref|ZP_05548961.1| ## NR: gi|256843473|ref|ZP_05548961.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 89 1 89 89 121 100.0 1e-26 MFLVLSQTDWFWIMVWVFILASAFHLWKWVWVVFGIYLIFPALLTLMDGLWRIALVIGVI FLGIKCVSMGITWIKQKIKQNKETKKVKA >gi|256541422|gb|ACPV01000052.1| GENE 11 6256 - 6642 216 128 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843474|ref|ZP_05548962.1| ## NR: gi|256843474|ref|ZP_05548962.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 128 1 128 128 235 100.0 5e-61 MKLFLGIYLAYFLTSLIWIAVVFNKTDAEEKYVNRVTKRGKQTVNYKSVSLKVMNVDMNQ GCSMLELLSNDHHSFEDDPPIVIKAIVPKNQIKVFKAKQAKQIEADLQVVINTRGNIPQV QTKVIRVY >gi|256541422|gb|ACPV01000052.1| GENE 12 6645 - 6872 202 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843475|ref|ZP_05548963.1| ## NR: gi|256843475|ref|ZP_05548963.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 75 2 76 76 149 100.0 8e-35 MNKYDLYPGMITTPAELSKIFTWRFRYDVLGMQPLDSNSFYVRVKQLNDQSIDIKANQKI KYAGEGKWLVVVERS >gi|256541422|gb|ACPV01000052.1| GENE 13 6865 - 7182 273 105 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843476|ref|ZP_05548964.1| ## NR: gi|256843476|ref|ZP_05548964.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 105 1 105 105 180 100.0 3e-44 MNLKNKKVIQDLLNDKIDIQEIEDRLFVIAFLSMADNLELDGQRLSSKQKLELNSYLAGE ALGLMGNSPEVLSNRIYDPDYLAKMGKLIEKAFVDYMNMSGVHDE >gi|256541422|gb|ACPV01000052.1| GENE 14 7315 - 7914 583 199 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843477|ref|ZP_05548965.1| ## NR: gi|256843477|ref|ZP_05548965.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 199 15 213 213 337 100.0 2e-91 MKDKLKQSIIAITSANLKRILYNQKLTQRDLAALTGISIPSINRYYLGNGAIPQNNLVKI AKALHVAPDELDPSYQPTKDFLSQLAEKTDDPDLKFRTDYLKQLIQNSSLSVQKVADRLN IKPITVYKWLAGVNTPNKENTAKLADLFNVSVNSLVDTSKEIDLTPQQNKILNVLPEDLT DQQTDLIISLIKSVLANAN >gi|256541422|gb|ACPV01000052.1| GENE 15 7911 - 8291 394 126 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843478|ref|ZP_05548966.1| ## NR: gi|256843478|ref|ZP_05548966.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 126 1 126 126 220 100.0 2e-56 MELTGKKENFDEFLVKVDELGYAIGDVLPNSWTLNLTDVTRLLNEMLSEKHLKVKQETVT TSDNLAVQVKTILQDRDLQVSASLDTILDSNNQVEYMLNWWQWRINCQLALIEVISGFYE KANVED >gi|256541422|gb|ACPV01000052.1| GENE 16 8375 - 8719 339 114 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0577 NR:ns ## KEGG: LGAS_0577 # Name: not_defined # Def: phage related protein # Organism: L.gasseri # Pathway: not_defined # 9 112 4 105 111 96 49.0 2e-19 MQEDMSNALINIPSLTSFVKSIVKEAVKEDKKDLTGKTWNINEFRKYCCRGKGDNWVRTF IFDEFPEVDYKNGGFVVNPRKTPEGKTTIIFAKEACEWMQQHQHEIDWNAKITS >gi|256541422|gb|ACPV01000052.1| GENE 17 8722 - 9414 304 230 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|262046666|ref|ZP_06019627.1| ## NR: gi|262046666|ref|ZP_06019627.1| predicted protein [Lactobacillus crispatus MV-3A-US] # 1 230 40 269 269 415 100.0 1e-114 MLNVTGEFFMSNKKISERLQVSTRTVNDYLDILEKKKLIIREKIVNDENNAIIGRKIRAG AALVKCISLGWGSPLHEGSEAHFTPLVKPTSHKKNRDNRTTNRTVNKSSSSSFSLEDQSN SIKNQKSEEEDKLNNSNSRKEEPRREKVYKRLFQIARMNDQWKGTRTIPTPDQIRQLRML LYQCDYLSLDAVLQTFSEKMRADQLFEPWKYVLQLMRDKIAAQKNYESWG >gi|256541422|gb|ACPV01000052.1| GENE 18 9533 - 9778 94 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843481|ref|ZP_05548969.1| ## NR: gi|256843481|ref|ZP_05548969.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] # 1 81 1 81 81 142 100.0 6e-33 MVRATKENAGKILKSYLREHGIKQNYVAKKVGISSANFSSRLNGRLKFNADFALTVSKAL DIDPEIFFEIKLFKLDKLRGA >gi|256541422|gb|ACPV01000052.1| GENE 19 9956 - 10309 408 117 aa, chain + ## HITS:1 COG:BH1443 KEGG:ns NR:ns ## COG: BH1443 COG1396 # Protein_GI_number: 15614006 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 3 117 1 106 107 60 34.0 5e-10 MSIFSDRLINARKAMGWSRKRAVSEIGIPYPTYSNYEQGKREPDISTIATFAEKLNTSTD YLLGRTNNPSPSSTNSEITDSDLNKMIDNARFFDGKPIDDHDKDLVRDILKRIYNEK >gi|256541422|gb|ACPV01000052.1| GENE 20 10325 - 10729 333 134 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843483|ref|ZP_05548971.1| ## NR: gi|256843483|ref|ZP_05548971.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] # 1 134 1 134 134 270 100.0 2e-71 MDTELKRLLKESNIKLEFAPLHCPGLLIPGEDNKPDVMIVNSSYDDEKAKNVILHELGHM IYDKDVQGDYKTDDCAHSCSEHGANSFLIRERVRQYFALGNDFQTANWLDFAKGIGTQDY FQVQEEFNKYRFEE >gi|256541422|gb|ACPV01000052.1| GENE 21 10874 - 11959 538 361 aa, chain + ## HITS:1 COG:L47248 KEGG:ns NR:ns ## COG: L47248 COG0582 # Protein_GI_number: 15672418 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 1 361 1 374 377 184 30.0 2e-46 MAHFEKRGATWRAQVSWYDDQGKRRFKTKQGFLTKSAARKWANEMEVAKDDNRISDQNPT FAQAYEEYTNTYKIPGKATTTQRRYNYSITIVKNYFGNVKLTKMNRQRYQSFLNNYGKNH AKTTVRLLNRYIKAFVHDCLSDKLITNNFTDRVNLTWNDSHSHKVQYLNYKEVQKLLKSL EFNIEPTYISRYMIITAIYTGMRIGEIMALKWSDIDFKKHLIRVTKSYSYVDGKIKEPKT ESSKRVIRVSENLLDLLKQLKANHQKFVFMTQHGKIITATAANQTLKKQLKKLKISKNHF HFHSLRHTHVALLLFKGVPLYAISKRLGHSSMSMTASVYAYMLDELRQQSDDQIEEVLNQ I >gi|256541422|gb|ACPV01000052.1| GENE 22 12263 - 13159 893 298 aa, chain + ## HITS:1 COG:alr0079 KEGG:ns NR:ns ## COG: alr0079 COG0657 # Protein_GI_number: 17227575 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Nostoc sp. PCC 7120 # 33 257 149 372 411 83 29.0 4e-16 MELKDKIKKFVTDFRDGAYQHDTKRDSGLPHDIPEVERLDNLPYGPDEKWHTLDVYLPKK HEAPFPVIINIHGGGWVYGTKEIYQYYGMGLAKRGFAFINPNYRLAPENAEFPDELDDVD RYMHWVDEHAEEYRLDRNNVFIVGDSAGGQMAEQYVTILTNPDYAKLFSYKPLNLKFRAV GLNCAASFMLTPSNLDGMASAYFTKNAVNKYHEQLDVEKYINHNFLPTFLITANKDFLHD MQFTLFGFLLGRGVHAICKSYGDEDNPRGHVFFVDQKDELADIANDEEIEFFRKFLQK >gi|256541422|gb|ACPV01000052.1| GENE 23 13172 - 13528 286 118 aa, chain + ## HITS:1 COG:BS_yusI KEGG:ns NR:ns ## COG: BS_yusI COG1393 # Protein_GI_number: 16080333 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Bacillus subtilis # 2 117 3 117 118 94 44.0 4e-20 MIKFYGYKRCSTSRKARKWMDDHQVNYEFQDLVEQPPKKEDLVKWMTKYQDRGLKYFFNT HGQDYRRENLKEKVPTMKIEEAADMMSKNGKLIKRPLVVDDSNLTCGFKEDIFEQIWL >gi|256541422|gb|ACPV01000052.1| GENE 24 13574 - 15154 167 526 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 316 508 4 198 309 68 27 4e-11 MSSKELFKLNPIKFCLAMGLQIIAAVGEVVVAYVLTLQFDAAKNRNLSLFLTWTLIQLSS YVMVFLFYNLAGIIWQKLIQNYLHLIRQELTDHYFADSQKHAVSAVQNRMTNDLKLLHND YLDSFRYVVGMLAGIVGVAFSLVTFQWSLLVACLIFAAIQIYLPKLLDKPLQKATEKVSV ANRKYLKTLGDWLIGLSEVRRYLASDKLFKTIAENSGRLEAANIEKEKVDQELDYLNQLA YSLGDVLIFLLTGFLVVNNWAAFGLIASIGNFNGALFGSLQGVANYGGRMRATKKLREEI LVARKKIQSEHKSNLEQAVSFSIHNLAIDFRNGEAVTFPDFQVKAGEKILLTGDSGTGKS TLLKLILGELQASRGKIQYFNQKGEKIQPDLAKIGYLPQDPVLFPVTIVENITMFNSKLL NRVKSAIEKVQFAGDIAKFSAGIETKIDLDQLNVSGGQRQKIVLARSMVHQSKLILIDEA TSAIDQAATMKILRQLTKTDATIVFIAHNFNQEMHQLFDREIHLKK >gi|256541422|gb|ACPV01000052.1| GENE 25 15154 - 16734 178 526 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 320 509 5 201 223 73 28 2e-12 MGLRDYIKTNRQRAMLVLFLITLTQLTTTMYTYLTSPQLNAIASGKFKLFLELIFVQFLI GQVCNVSFNWGSLQNTKQTQTLFHQVRQRIIRHYYQQPEDKVSEMENHLGNDLQLVQESY YNVYFYFVCDLIYIILTIGTLFTFHWILVVYTLLVTLLAVVVPKLTEKYTNRATKAVSIQ NKQFLQLLEKWFKGLDELRRYQNKVVLKKVVGQQSQKLEQSEYQRDKLLHYTSLVSAIFN IAGRVGVPFIAGILFFNHQVNLGAILTAGYFANGIFYSVDSCVNRYTQLKSTKTLRDDLA KLQKCLPEKGYDSLKQIATVQIKSLSVQYPNGERITYPDFELKNGEKVLLTGDSGTGKST LLKVLLGQIKPSTGEVIYCDKTGKKIKPDLRQLGYLAQDLLIFPGSIQENITMFKPKLNK KTVQVIHKTVFDSDQARLKNGIETQLDPQQELLSGGQKQKVVLMRALLHEKPILYLDEAT SAIDQQATTKIFQNLMQSRATILAVAHNLTVEQRALFDREVHLEGK >gi|256541422|gb|ACPV01000052.1| GENE 26 17068 - 17562 486 164 aa, chain - ## HITS:1 COG:lin0440 KEGG:ns NR:ns ## COG: lin0440 COG0561 # Protein_GI_number: 16799517 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 8 164 112 269 270 92 32.0 5e-19 MVFGRDIAYLHSNVEKDERDFLAYFAGNSTVINDWNDLPDKIYQITFGMDSSKAAEIERD FNSKHDNQISAFASATFAIDVNTQGVNKGAGLKHLLEKMGMTGDDLIAFGDGGNDIDMLK FAKYSYAMANGMDKVKKQAKYIAPANTENGVFKVLQKYLAEDKK >gi|256541422|gb|ACPV01000052.1| GENE 27 17572 - 17883 256 103 aa, chain - ## HITS:1 COG:SA2313 KEGG:ns NR:ns ## COG: SA2313 COG0561 # Protein_GI_number: 15928104 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 6 84 3 78 266 66 46.0 1e-11 MTLPFKAVAVDMDGTFLDDRKQFNHKEFDQILTEFEQRGVHFIVASGRPYVRLKQDFGKF ASRMDFVTLNGSRLIIKGQEAGSYLLNRDDVLKLIHDVHVKYG >gi|256541422|gb|ACPV01000052.1| GENE 28 17943 - 18260 268 105 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01360 NR:ns ## KEGG: LCRIS_01360 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 96 1 96 108 134 100.0 8e-31 MGFWYYYVLPLVTAILFVWLGNRVMVTKKWISIIFYSLAGVGYLIASVFAVFYIYATVEE ILTPDILTKIGWHYFWSDNFIFLLTSTVLLTISYFVLKRGRLRMK >gi|256541422|gb|ACPV01000052.1| GENE 29 18382 - 18642 275 86 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01361 NR:ns ## KEGG: LCRIS_01361 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 86 1 86 86 133 100.0 2e-30 MKLLKTKILTILCGLLTLNGLAMLFSGLIIQMDEVADFDSAQSLAVANSTNAIILAGIIM ILLFGALFFDGWAKLKNRHAKHVKLV >gi|256541422|gb|ACPV01000052.1| GENE 30 18765 - 19232 423 155 aa, chain - ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 5 155 142 289 289 110 41.0 1e-24 MSMFGHSLGNISIIYYMLQNGRNRKMPQLVKQVDMAEHFAGLNFSRVPASIRQPKGLKLN SAGKPNKMNASYRKMTGVRETYPKNKVRVLNIIGDIGGQTDGTVPNVSSLSLKYLVADRA KSYQVVKFTGKNARHSKLHENPKVDKVLIKFLWNK >gi|256541422|gb|ACPV01000052.1| GENE 31 19229 - 19624 235 131 aa, chain - ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 1 131 1 137 289 75 35.0 2e-14 MRKKFSLVLLLTTIFTISLTACTNQNKVDHTKSQTKITSTPTLFFHGGGSSYHAEEHMVA AAEKAGVTNSVIRAEVAPNGKVSLSGSWKKGAKNPIVEVNYENNRELNFSRHGVYATNVV KALQKRYGIKK >gi|256541422|gb|ACPV01000052.1| GENE 32 19770 - 22151 2348 793 aa, chain + ## HITS:1 COG:no KEGG:lhv_1436 NR:ns ## KEGG: lhv_1436 # Name: not_defined # Def: x-prolyl-dipeptidyl aminopeptidase # Organism: L.helveticus # Pathway: not_defined # 1 793 1 793 793 1509 91.0 0 MKYNQYAYVETDFDQQVKELIDINFLPKNYADWNFNDLLGKLVKMTIAEAKTDAAKTTKL SEFAVSNEQTLADFLKGKPESIGTAQFYNVALQLLGYHVHYDYELADPTGFMQKNALPFV QDISDVKKLISAFYRLLNTRAKNGQILLDVMAGKGYFTQFWGQNKFKFFNGKAIPVFDTN KVIREVVYVETDLDTDHDGKSDLIQVTVFRPAETNKGLKVPALYTASPYFGGIIANEKRN HNVDENLSDAADWNDPQYVHSPIVKAKQPDDSNHPATEEAVHKSSYPLNEYMLARGFASV FAGAIGTRGSDGIRITGAPEETESAAAVIEWLHGDRIAYTDRTRSVQTKADWCNGNIGMT GRSYLGTLQIAIATTGVKGLKTVVSEAAISSWYDYYREHGLVIAPEACQGEDLDLLAETC QSNLWDAGSYLKIKPEYDKMQKELLTKEDRETGQYSNFWEARNYRHHADGIKCSWISVHG LNDWNVKPKNVYKIWQLVKKMPMKHHLFLHQGPHYNMNNFVSIDFTDLMNLWFVHELLGI ENNAYKQWPTVMIQDNLQADKWHEEKDWSNELGQKKTYYPTDDGELFQDGNGKAQQSFVD EGGIEFKKADISESDWLYKFICGDEKWAKPSLRFETDEFIHPTTIVGRPEVKVRVKGSLP KGQISVALVELGERRRLTATPKFLMRGGQELGYRFGTDTLQEFVPDKKTKAKLITKAHMN LQNYKDMKRPEKIDADKFYDLDFLLQPTYYTLPSGSKLALIIYSTDEGMTKRPLEEETYT VDLANTEIKFYEK >gi|256541422|gb|ACPV01000052.1| GENE 33 22208 - 22645 524 145 aa, chain - ## HITS:1 COG:lin1973 KEGG:ns NR:ns ## COG: lin1973 COG0229 # Protein_GI_number: 16801039 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Listeria innocua # 4 145 2 145 145 196 70.0 1e-50 MTFNKEEKEQALKRLTDEEYNVTQKAATEYPFTGKYDDFYEKGIYVDVVSGEPLFSSLDK YNAGCGWPSFTKPIKKLTYHRDQSHGMERTEVKSPEADSHLGHVFTDGPVDQGGLRYCIN SAALRFIPYDQLEQAGYGEYKKIFE >gi|256541422|gb|ACPV01000052.1| GENE 34 22661 - 22942 357 93 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01366 NR:ns ## KEGG: LCRIS_01366 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 93 1 93 93 162 97.0 3e-39 MSDNTVYVIDGRRYARNGEIVEHNVHVYSSYQNLIAAFKPFLEVSNKEVHMNGKNEMLQV RIYDPSNQFLTKYKFDIYEKKIDNFFPSTTEHI >gi|256541422|gb|ACPV01000052.1| GENE 35 23069 - 23932 1063 287 aa, chain - ## HITS:1 COG:lin0212 KEGG:ns NR:ns ## COG: lin0212 COG4975 # Protein_GI_number: 16799289 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Listeria innocua # 1 265 1 261 285 149 35.0 6e-36 MSYLFLFIPAIGWGLMPMFVAGVKKSNIYHQILGTVLGAFIFGAAVTLIKRPSFNATTFI LAMLAGAAWVIGQVGQYYSYSKVGVSETMPISTGLQLIGVPLVGVLIFGEWASTQAKLFG FLGILALVIGVAFTSLTDKGTSEGGKKNQTTTMIVLVLTTLGYITSSSIPKALKGDSIMI FFAETIGMLVAAIVYLIATKQTQVFKEKESYQVIPAGVIYAIAALAYIVSVKMNGVNLAF VMSQLCVVISTLGGILFLHEKKTQKGLVYTVIGLILIVAGAVLTSVF >gi|256541422|gb|ACPV01000052.1| GENE 36 24077 - 25603 1005 508 aa, chain - ## HITS:1 COG:BB0604 KEGG:ns NR:ns ## COG: BB0604 COG1620 # Protein_GI_number: 15594949 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Borrelia burgdorferi # 5 499 6 498 500 333 43.0 5e-91 MWISFLLALIPIIWLIYSLAIRKTPAIKACSIGLLITIVLAILGFNLSIVDTLTGALEGI LMGLWPIVYVIVAALFTYNVSNYSGGIKIIQDTLSSITTDQRILVLIIAWGFGGFLEAIA GFGTAVAIPAGILIGFGLNPINAAIICLIANTTPTAFGAIGLPVITLSDVTNLPVTPLSF VITLQLALLIIIIPFLLVILTGGGVKAIKGVGLITLMSGLSFSIPQILVAKFVGPELPAI VGSICCILTTVLMAKLYHHQDNDIKENIEKHSAIEILRASLPFILVFVFVVLASSLFPDI QHLLGKVTSYIKVYTGKDAELFKINWLSSPGTLILLATFIGGLIQKVSFKKLGQILKSTI FGLWKTLITICSIVALAKVMGYAGMTSAIAAALVVLMGPIYPLVAPLIGALGTFITGSDT SANVLFGNLQLSSAKALGVNSNWVVGSNMVGATAGKMISPQSIAVASAAIGQDGSESIIL KQVAKWCLLYLGIICIFLYGIGFAVGFL >gi|256541422|gb|ACPV01000052.1| GENE 37 25867 - 29055 3629 1062 aa, chain - ## HITS:1 COG:SP1275 KEGG:ns NR:ns ## COG: SP1275 COG0458 # Protein_GI_number: 15901135 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Streptococcus pneumoniae TIGR4 # 1 1061 1 1058 1058 1434 67.0 0 MPKRTDIHKIMVIGSGPIIIGQAAEFDYSGTQACLALREEGYEVVLVNSNPATIMTDTTI ADKVYIEPLTVESISRIIRQEYPDAILPTLGGQVGLNMAMELAKTGILDELHIELLGTKL QSIEQAEDREKFKELCKSLGEPVPPSKTVNTVEDALAFGDEIGYPIIVRPAFTMGGTGGG ICNNHEELAEIAKNGLELSPVTECLIEKSIAGYKEVEFEVMRDHDDNAMIVCCMENFDPV GIHTGDSIVFSPSQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFNYDVIEVN PRVSRSSALASKATGYPIAKMAAKIAVGMTLDEIKNPVTGTTYAEFEPALDYVVCKIPRW PFDKFPKADRVLGTQMKATGEVMAIGRTAEEAMQKAVRSLEIDEKDLYSPEAHVASDDQL EQKLVKAQDDRLFYLAEAFRRGYSAEDVHELTKINFYFLDIVQHMVELEKTLEENKDDVD VLRLAKKYGFSDPTIASLWNETADEVRAFREKHGIIPVYKMVDTCAAEFESKTPYFYSTY DAENESHKTGKKSVIVIGSGPIRIGQGVEFDYATVHCVKALQKMGYEAIVINSNPETVST DFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGGQTSINLAHGLEEHGVKILGTKVAD VNRAEDRELFDQIIKQLHLNQPQGLTATTHEGVLEAADKLGYPVLVRPSYVLGGKAMEIV YTKAELEEYLQDHVDIAADHPILVDDYLDGRECDVDAISDGKEVLLPGIMEHIEHAGVHS GDSMAVYPPQTFSDEVKEKITDVTRKLALTLNCVGIMNIQFIVRDGEVYVIEVNPRASRT VPFLSKITGIEMAQVATRVIMGESLAEQGYGDGLAPEPDMISVKAPVFSFSKLSDVDAYL GPEMKSTGEVMGSDHTFAKALYKAFAGAKMQLPENGNVLLTIEDRDKEKILPIAKRFARI GYRIFATKGTADFLRSHDLHVDPVTKVHEDEDAKDNILNELRNGKIDLVINTMGHDIEKN SDGFIIRQVAIGQNVPLITALDTADALLTSLENRSFATDALK >gi|256541422|gb|ACPV01000052.1| GENE 38 29048 - 30133 1019 361 aa, chain - ## HITS:1 COG:SPy0833 KEGG:ns NR:ns ## COG: SPy0833 COG0505 # Protein_GI_number: 15674869 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Streptococcus pyogenes M1 GAS # 2 352 4 353 360 452 59.0 1e-127 MRYLILEDGSIYAGEGFGADCETVGEVVFTTGMTGYQEAITDQSYADQILVFTNPLIGNY GITLADYESLEPRIKGVICHQVARHPDNWRMQTTLPKFLEHLNIPGIQGIDTRELVKKLR VHGTLRGKIADSKENAEKIAAELKIKNVTQGVISRVSTKSPYPVPGSKRNIVVIDFGIKH SILRELAERDCNCIVLPYTATAQEVLNLHPDGVLLSNGPGDPEEMVEATKMVREVEKHVP LMGICMGHQVFALANGAKTYKMKFGHRGFNHPVREIATGNIGFTSQNHGYAVSADSIDKD NLMITHVEVNDGTVEGLRHKKYPAFSVQFHPDATPGPHDEVSLFDDFMSMIDQRKEEERH A >gi|256541422|gb|ACPV01000052.1| GENE 39 30133 - 31410 1298 425 aa, chain - ## HITS:1 COG:SA1044 KEGG:ns NR:ns ## COG: SA1044 COG0044 # Protein_GI_number: 15926784 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Staphylococcus aureus N315 # 4 424 3 424 424 414 52.0 1e-115 MATVIKNGTVYQNGRLIKADVLIEDQKIKAIGTNLTADKEIDASGKLVSPGLVDVHVHYR DPGQTYKEDIKTGSEAAAHGGFTMVGAMPNVTPVPNTPELMQKMVQENNEKGVVHIFQYG PITNDETTDVIPDYAALKKAGAFALSNDGHGVQTAQTMYLAMQKAKENNLIIATHAQDDS LFNKGIVNEGPKAKELNLPPVTELAETTQIARDLLLAQKTGVHYHICHVSTKTSVELVRM AKARGINVTCEVAPHHILLTDDDIPKDNGYYKMNPPLRNKEDQAALLVGLLDGTIDLIAT DHAPHARNEKEGGMKGAAFGITGSETAFSTLYTKFVKEEKVFTLEQLLSWLSDKPAKTFG LKNAGVLEPGKPADIAIFDLDHETELKEEDYKSKGVNTPFTGDKVYGETVMTMVDGQVVY RRDEQ >gi|256541422|gb|ACPV01000052.1| GENE 40 31410 - 32366 925 318 aa, chain - ## HITS:1 COG:SPy0832 KEGG:ns NR:ns ## COG: SPy0832 COG0540 # Protein_GI_number: 15674868 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Streptococcus pyogenes M1 GAS # 5 312 6 307 311 338 53.0 6e-93 MENLNLVNLPHFVSVENLDSNEVEALIRRAEYFKKGGATPRLTKPVYVTNMFFEDSSRTH TSFEMAERKLGLTVIPFDPAHSSVNKGETLYDTSLIMNALGVNLEVIRHSQNEYYNDLIN LKEHQHLNIGVINAGDGSGQHPSQCMLDMMTIHEHFGHFKGLKVAIVGDITNSRVAKSDM ELLTRLGAEVYFSGPSYWYDKEFDQYGKYEEIDQLVSNMDVMMLLRVQHERHAGDPNEKT FNAKAYHEKYGINQQRYSALKPDTIIMHPGPINHDVELSGDLVESDKCMFVRQMQNGVFM RMAMIEAVLRGRRLGGLE >gi|256541422|gb|ACPV01000052.1| GENE 41 32507 - 33049 707 180 aa, chain - ## HITS:1 COG:BH2541 KEGG:ns NR:ns ## COG: BH2541 COG2065 # Protein_GI_number: 15615104 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Bacillus halodurans # 1 176 1 176 180 191 56.0 6e-49 MAKEIWDALAMKRALTRITYEIIEQNKGTDDLVLVGIKTRGVYLAKRIHDRIQKLEGVDV PVGELDITLYRDDRHDASLKQDPVVNSDQVGVNIDDKHVVLIDDVIYTGRTIRAAMDALM HVGRPSLIRVAVLVDRGHRELPIRADFVGKNIPTSADEQVAVNVIEKDGKDSVELKALPK >gi|256541422|gb|ACPV01000052.1| GENE 42 33218 - 34141 1121 307 aa, chain - ## HITS:1 COG:BH2534 KEGG:ns NR:ns ## COG: BH2534 COG0167 # Protein_GI_number: 15615097 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Bacillus halodurans # 1 302 1 299 305 312 55.0 5e-85 MVNTHVKLPGLDLKNPVMPASGTFGFGDVPAAKKFDLNDLGAMVIKTTTPHATTGNPQPQ IAVLDDGVLNSVGLTNPGVNKVISEKLEPLRKQYPELPIVASVGGDSEADYVEVAQKLSN SGLVNALEINVSCPNVAQGGMSFGVHADVVEELTRKIKAVVNIPIYVKLTPNVTDITVIA KAAEKGGADGLSMINTLLGMRIDVKKRRPLLGHNMGGLSGEAVKPIAIRMISQVRQITSL PIIGMGGIASAEDVVEFMLAGANAVAVGTAHFKDSIASKHIADALPQELEKLGIEDINEL VGQVKFN >gi|256541422|gb|ACPV01000052.1| GENE 43 34392 - 35096 670 234 aa, chain + ## HITS:1 COG:L181692 KEGG:ns NR:ns ## COG: L181692 COG0284 # Protein_GI_number: 15673327 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Lactococcus lactis # 2 234 5 236 237 220 49.0 2e-57 MKPVIVALDIDNEEQLHKILSKLGKPENVFIKVGMELFYHAGNQVVKDLAEQGYKIFLDL KLHDIPNTVYNGAKQLAKLGITFTTVHALGGSQMIKSAKDGLIAGTPVGKSVPKLLAVTE LTSISDEVLAHEQNCALSMKEQVLSLAKMAKHSGADGVICSPLEVKELHEKVGDDFLYVT PGIRPAGNAKDDQSRVATPAQAKEWGSSAIVVGRPITLASDPEAAYEAIKKEFN >gi|256541422|gb|ACPV01000052.1| GENE 44 35098 - 35736 712 212 aa, chain + ## HITS:1 COG:L80411 KEGG:ns NR:ns ## COG: L80411 COG0461 # Protein_GI_number: 15673050 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Lactococcus lactis # 6 206 7 207 209 213 50.0 2e-55 MHKDQIISQLIQEKIITISPDKPFTYASGMLSPIYTDLRLTVSYPELRDMIAGDLANLIA KEFPEATIIGGVATAGIPHAAWVADKLHLPMIYVRPKPKDHGKGRQIEGRFSKDDKIVLI DDLITTGGSVLNAVKATEKDGGNVIGVSSIFTYYLPDAKENFAKANVKYAPLLSYPELLK KENESGHISSSQYDVLKTWHEDPWAWGKQFEK >gi|256541422|gb|ACPV01000052.1| GENE 45 35803 - 36024 102 73 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKIPPGTEEPYESIEKTNRIIKNKIGSKRKSHDPKALTFQFKLNKLSINTCEPPSKWALN RPTGIIKIKGMIL >gi|256541422|gb|ACPV01000052.1| GENE 46 35984 - 36334 249 116 aa, chain + ## HITS:1 COG:L113400 KEGG:ns NR:ns ## COG: L113400 COG0038 # Protein_GI_number: 15673646 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Lactococcus lactis # 1 115 315 429 512 94 44.0 6e-20 MLSYGSSVPGGIFMPILVLAALLGIICANIMIKLQIILPMYFPHILVISMAAYFGAIEKA PFTAIMLLTEMIGTVQQVLPMIIVTFVAYYILDILGGKPIYEALRLQMNYHKNIDK >gi|256541422|gb|ACPV01000052.1| GENE 47 36605 - 38107 1294 500 aa, chain + ## HITS:1 COG:L119564 KEGG:ns NR:ns ## COG: L119564 COG0488 # Protein_GI_number: 15672881 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 499 1 510 513 399 44.0 1e-111 MSTISLKNVSFAYDGQDKIFDNLNLNLDSNWKLGLIGRNGRGKTTFMKMLLKQVEYQGTI QSDLEFNYYPQVINDPDNLTIYALQEQFNFEEWELKRELNLLHAKENIIWQPFSTLSGGE QTKILLALCFINQHSFALLDEPTNHLDEDTRNQVAQYLHNKKQGLIVISHDRNFVDKVVD HTLAIEMQKIRLEQGNYTRYEKQKELEDESNIAYNAKLEKQIKNLHASQQKMQTFAQRSE SNKNAGAKMKGDIRHRSTVYDKGFMGHKAAKKMKLAKNVEARLDKNIEERKGLLKNIEAD NDLAMNFVPDHHKHLITAKGVSLAYDKLPLFQPTTFDLMRGHQFVITGKNGIGKSSLFKA ITNTFAGTITGKLHSADKISISYLSQIEQSNNLSLKDFAQKHHLNYADFLNILHKLGTER DIFTNSINQMSSGQQKKIYLAKSLLEPANLYLWDEPLNYLDVFNQEQIIQLIKKYHPTIL VIEHDQRFIDELGAQVIHLT >gi|256541422|gb|ACPV01000052.1| GENE 48 38160 - 38453 325 97 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01379 NR:ns ## KEGG: LCRIS_01379 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 97 1 97 97 132 98.0 5e-30 MTKEKAELKQNLEHLAEQKGSQQAVSYQDLFTPQLMQKYTSFATIDFFVRELGVKDFTQI EQMAIDQVDEFVKKETKFASWEEMQQKAVSEYMMKLF Prediction of potential genes in microbial genomes Time: Wed May 25 05:27:02 2011 Seq name: gi|256541421|gb|ACPV01000053.1| Lactobacillus crispatus 125-2-CHN cont1.53, whole genome shotgun sequence Length of sequence - 6659 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 5, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 9/0.000 + CDS 67 - 729 726 ## COG1760 L-serine deaminase 2 1 Op 2 . + CDS 744 - 1625 998 ## COG1760 L-serine deaminase 3 1 Op 3 . + CDS 1634 - 1948 396 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme + Term 1953 - 1989 5.1 - Term 1943 - 1975 1.4 4 2 Op 1 . - CDS 1996 - 2610 676 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 5 2 Op 2 . - CDS 2651 - 3061 347 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 3114 - 3173 8.9 - Term 3142 - 3185 6.0 6 3 Tu 1 . - CDS 3212 - 4492 1725 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases - Prom 4566 - 4625 13.3 + Prom 4531 - 4590 6.6 7 4 Tu 1 . + CDS 4777 - 5976 1373 ## COG0282 Acetate kinase + Term 5994 - 6034 8.4 - Term 5982 - 6022 9.2 8 5 Tu 1 . - CDS 6032 - 6658 623 ## COG0531 Amino acid transporters Predicted protein(s) >gi|256541421|gb|ACPV01000053.1| GENE 1 67 - 729 726 220 aa, chain + ## HITS:1 COG:BS_yloW KEGG:ns NR:ns ## COG: BS_yloW COG1760 # Protein_GI_number: 16078648 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Bacillus subtilis # 4 162 2 156 220 154 50.0 1e-37 MTNRYKSVFDIIGPVMVGPSSSHTAGAVAIGRAGYKLFGGTPSKVTVHYYDSFAQTHRGH GTDYAIAAGILGFDSDDLRVPKAPEIARQRGVDLRFVEEDGPSPIGHPNTAILNMSNDKK KVELAGCSIGGGAIEIRKIVLHNTEIQPAGALPIIILVDPHKNIRIEQELTALLHEKAPF SRKRIFHTKNYNIYEYDVENYLHPDLLQELNKKFENIICL >gi|256541421|gb|ACPV01000053.1| GENE 2 744 - 1625 998 293 aa, chain + ## HITS:1 COG:SA2318 KEGG:ns NR:ns ## COG: SA2318 COG1760 # Protein_GI_number: 15928109 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Staphylococcus aureus N315 # 1 290 1 290 299 318 63.0 8e-87 MYNHIKEIVAAAEKTHKPISELIIEQECQLSGLPREKVWQRMKYNLQTMRAAVKRGESGN GVFSKTGLTGGEAIKLKKYREKGHTLSGDIMMAAVENAIATNEVNAAMGVVCATPTAGSS GTLPGVLFLLEKRLQLSEEQMIRFLFTAGGFGMVIANNAEIAGATGGCQAEVGSASAMGA AAAVEVAGGSAEQSAQALSIAMSNLLGLVCDPIAGLVEVPCVKRNGIGAGNALIAADMAL AGCTSVIPADECIEAMKKVGHQMPASLRETGIGGLAGTPTGQAIKAKIFGKDA >gi|256541421|gb|ACPV01000053.1| GENE 3 1634 - 1948 396 104 aa, chain + ## HITS:1 COG:lin2362 KEGG:ns NR:ns ## COG: lin2362 COG2151 # Protein_GI_number: 16801425 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Listeria innocua # 5 98 3 96 102 102 48.0 2e-22 MRDSKTIKNDIIEHLAQVIDPELNVDVVNLGLIYEIDLDQDGICLINMTLTTPACPLTDY LIKQITTAVKKVPEVKNVDVEFVWYPVWTPERMSDAAKEYFKIQ >gi|256541421|gb|ACPV01000053.1| GENE 4 1996 - 2610 676 204 aa, chain - ## HITS:1 COG:lin0289 KEGG:ns NR:ns ## COG: lin0289 COG0624 # Protein_GI_number: 16799366 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 1 202 177 378 378 129 35.0 5e-30 MDTKLTSQGKEAHSSMPEKGYNAIDPLMDLLVKANKAFRETDKNNPDLGKLTFNTTVFTG GEQVNMIPGEATAQINVRTIPEFNNSLVEKKLTELVKAENAQGAKIKMDIYMSEPSIKTD GKSEFVKLAQKIGAKYAEKPIPTVAIKPVTDASNLIADKGPSYPFAMFGPGNDTPHQVNE YVDEKMYLNFVKIYTELFVAYLNK >gi|256541421|gb|ACPV01000053.1| GENE 5 2651 - 3061 347 136 aa, chain - ## HITS:1 COG:SA1814 KEGG:ns NR:ns ## COG: SA1814 COG0624 # Protein_GI_number: 15927582 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Staphylococcus aureus N315 # 2 135 5 138 407 139 50.0 1e-33 MTDTEELKILSDLVAIKSVNDNEILVAKYLQKLLGEHGISSRLLEYSTTRADLFAEIGTG HPILAICGHMDVVSPGELDQWHTDPFKLTNKDGKLYGRGATDMKSGLAALVIAMINIHEH HLIKHGSIRLLATFGW >gi|256541421|gb|ACPV01000053.1| GENE 6 3212 - 4492 1725 426 aa, chain - ## HITS:1 COG:STM1620 KEGG:ns NR:ns ## COG: STM1620 COG1304 # Protein_GI_number: 16764964 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Salmonella typhimurium LT2 # 4 365 23 392 400 353 50.0 5e-97 MTHYYEGFPQSDRDEKIKMVNVDELEERVKKVMPEGAYYYIASGAENEWTWRNNTAAFNH FQIVPRALTEMADPQTDTDFMGMHLKTPIMIAPIACHGIAHKDAEVATQKGAAMAGALFS SSTYANKSVEEIAAAAPEAPRFFQLYLSKDWNFNQMVFDAIKKAGYQGIFLTVDALVSGY REANLRTNFTYPVPLDFFKRYLGAKGKGQSVAQMYASSAQKIGPEDVKRIKKESGLPVFV KGVMCAEDAYKAIGAGADGIYVTNHGGREVDGAPATIDVLPEIAQAVNHRVPIIFDSGVR RGSHIFKALALGADIVGIGRPYLYGLALGGAHGVASVIEQLNDELKIDMQLTGCKTIDDV KHAKLTHIAYTADNLPSNTDPSRRKEYPVTDENQVKQTDAVSGASKLEGKPAPEPETDTT TGASVR >gi|256541421|gb|ACPV01000053.1| GENE 7 4777 - 5976 1373 399 aa, chain + ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 1 396 1 394 395 415 52.0 1e-115 MKKILAINSGSSSFKFKLFTFPDEKVISEGMADRVGLNGSTFTIKVKGEKHQEKVDIPDS ETAVTILLENLKKYDLIDDPKEIIGIGHRIVAGGEEFKDSTLIDEKSLQKIYDLKQYAPL HNTAEADVINAFMKVLPGVPEVAVFDTSFHQTLDPVHYLYSLPYKYYEKYGARKYGAHGT SVRYVSQKAAEIMKRDLKDLKLIVCHLGSGASVTAVKDGKSFDTSMGFSPMAGITMSSRS GDVDPSLLAFVMKKENLDADQMLKVLNNESGLLGISGISPDMRDLRGDMTKLEGEKKKRA DLARNIFINRIIRYVGAYTLEMRGLDGIAFTAGVGEHDFGVREHVMDSLELLGLKPDSAA NKENATIITKPDSTIVGMVIPTNEELMIERDVVRVAGLK >gi|256541421|gb|ACPV01000053.1| GENE 8 6032 - 6658 623 208 aa, chain - ## HITS:1 COG:ECs5137 KEGG:ns NR:ns ## COG: ECs5137 COG0531 # Protein_GI_number: 15834391 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 1 202 301 504 514 146 42.0 3e-35 INNLGIVTGHSLGLSHSTSLAIGTVFSRLAGIADVLSGIAAAFLMVYSPIKSFIEGCDPR LLPKKMVKLNKHNMPEFSMWVQAIVVSVIILFISFGGNGAQQFYTILMDMMNVSSSAPYL FLIAAYPFFKAKKDLDRPFVFIEGKKKVWATTIVVWLVVAVGIIFTCIEPLFTGDWQTSF WTAIGPVAFGVIAWIYYAYNERKEKAMA Prediction of potential genes in microbial genomes Time: Wed May 25 05:27:06 2011 Seq name: gi|256541420|gb|ACPV01000054.1| Lactobacillus crispatus 125-2-CHN cont1.54, whole genome shotgun sequence Length of sequence - 8785 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 3, operones - 2 average op.length - 5.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 865 585 ## COG0531 Amino acid transporters - Prom 900 - 959 4.5 2 2 Op 1 . - CDS 987 - 1640 663 ## LCRIS_01393 OrfB 3 2 Op 2 . - CDS 1654 - 2622 793 ## LCRIS_01394 hypothetical protein 4 2 Op 3 . - CDS 2561 - 3154 356 ## LCRIS_01394 hypothetical protein - Prom 3186 - 3245 6.1 - Term 3237 - 3278 8.1 5 3 Op 1 . - CDS 3300 - 4052 1008 ## LCRIS_01395 hypothetical protein 6 3 Op 2 . - CDS 4105 - 4617 453 ## LCRIS_01396 hypothetical protein 7 3 Op 3 . - CDS 4621 - 5025 420 ## LCRIS_01397 redox protein, regulator of disulfide bond formation 8 3 Op 4 10/0.000 - CDS 5035 - 6129 997 ## COG0477 Permeases of the major facilitator superfamily - Prom 6185 - 6244 4.7 - Term 6140 - 6177 1.4 9 3 Op 5 10/0.000 - CDS 6254 - 6844 658 ## COG0642 Signal transduction histidine kinase 10 3 Op 6 40/0.000 - CDS 6822 - 7520 805 ## COG0642 Signal transduction histidine kinase 11 3 Op 7 1/0.000 - CDS 7529 - 8194 759 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 12 3 Op 8 . - CDS 8202 - 8762 558 ## COG2357 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|256541420|gb|ACPV01000054.1| GENE 1 1 - 865 585 288 aa, chain - ## HITS:1 COG:ECs5137 KEGG:ns NR:ns ## COG: ECs5137 COG0531 # Protein_GI_number: 15834391 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 8 288 21 298 514 234 42.0 1e-61 MKNNDHVKISPSSLVLMIFSSIFGFSNSLTAFYQMGYSSIIWYIVTAILFFLPSALIFAE YGASFKGIKGGIFSWLEGSTNEKVSFIGTFIWLAAWVIWLVSSTQFFLVSVSTAIFGHDT TQSWHLGSLTSTQLLGVLEVIFLVIVTFCAAKGIDKIKAINNIGGIFTLGIAIGFTAVSL FVFILNHGQLAEPVTAQNMVHSPNPAFQSPIAVISFIVYALFAYGGLETTSGVIDSVDKP EKNYPKALITAMVLMTALYVVNIFMCGVAVNWNKSLGGKGVDLANVEY >gi|256541420|gb|ACPV01000054.1| GENE 2 987 - 1640 663 217 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01393 NR:ns ## KEGG: LCRIS_01393 # Name: not_defined # Def: OrfB # Organism: L.crispatus # Pathway: not_defined # 1 217 1 240 240 284 66.0 1e-75 MLYPDKFYLTQDLNRRFARTNLARLIFSDLHFEKTNISLIQTQLVADGLNIERASEKDKE RIIRLKRAWQYIINENKVLSLDIELKIHLLLTGYGFRDNLNYKQEEKFFDELMNNDTSTT DKAMTLMYHNMRNQLFWGGNKRTATLAANKLMIDHGAGLINAPLDKWDRWNKLISQYYLT GKMNMLKDWTYENGIQGVVLNNNSDLPKPDINPEDYD >gi|256541420|gb|ACPV01000054.1| GENE 3 1654 - 2622 793 322 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01394 NR:ns ## KEGG: LCRIS_01394 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 5 322 182 499 499 613 95.0 1e-174 MLERALLKQPKKPQAGDSARSWFKHYKTSGNWGRSFAPETRPHVLKSGHFRLKTYFYQPA TLCQSDSVTGTVGPVPEGLTVSNGSMYATMYHSPNDTRAHIVSYKFNQVPNRYTMQKLPW LPWSQFLRLVSHVKTSPYIKLGHGQAIGSTRKYIYVIANNHLLRKSSQSEEIMQISKNNL QIKQIWTFKVWNHSARTGRYFHNATFVNDHQFIAVYRDATDHRFEYWEVTRQGNSWYPKE IGATRGDFMRNDSPVQGITYDKHKKQIYLAFNDYLFKLKRSGKVLARGHFHTGREFEGIS INGRHLYAELAQRPELLRQRIR >gi|256541420|gb|ACPV01000054.1| GENE 4 2561 - 3154 356 197 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01394 NR:ns ## KEGG: LCRIS_01394 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 189 1 189 499 363 98.0 2e-99 MKRVKVYLGLACLMTLLCLKPQVVWARELNPFQTKMINPHTSYRIYQNLTRKGPSRSLCL ANTFKHGNVQASAVRKVRGNKYCYVWLDGHRGGWVNQRAFLRRKIAVVHQISLVKNSHYS FPTRDAINYATDAAGTVIEPSKVKVSRAEVSSSKKESYRVSYSYGKAHAQTVVQVRANAR EGIVKATKKTTSWRQCS >gi|256541420|gb|ACPV01000054.1| GENE 5 3300 - 4052 1008 250 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01395 NR:ns ## KEGG: LCRIS_01395 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 250 1 249 249 249 76.0 6e-65 MKTKNLFTSLAAAVMLSAGLAGAGVSAAEPVHAATTQTSSKKGTISIKRRSVSATVNNAN PKLYAVNQDGKIVKSMDSNYTKGQTIQLYFSNEAKNDQGSVTFYYVDSQTVDGQQCAIYV VSTDVTPSATVPSQADWYKQAQSDQKAIQDAYNNRALKYIVVSPKSKKGAKIYYAYKKSA KAKKVYFKATKKKIKYGKKYKSSMIVKNGKSRYAYIGKKRYLKTSTIKLVSAKYAPVQLS DDLKNLIVQN >gi|256541420|gb|ACPV01000054.1| GENE 6 4105 - 4617 453 170 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01396 NR:ns ## KEGG: LCRIS_01396 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 170 1 170 170 301 90.0 7e-81 MSEPYYKQEYQGERKLDGEAPVFSFDQIMKKTFLRPFIWNARTTRRSFWIGIVITEVIIW IGGIITFLATVMPVSHYENDSADMINGFAFNGDHASMIVIIGMIIWGLIYLYLKLCQLGL AVRRLHDINYTGWRILLMLIPLGWIFVLYFAIQPSKQEPVKWGTYLYLDE >gi|256541420|gb|ACPV01000054.1| GENE 7 4621 - 5025 420 134 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01397 NR:ns ## KEGG: LCRIS_01397 # Name: not_defined # Def: redox protein, regulator of disulfide bond formation # Organism: L.crispatus # Pathway: not_defined # 1 134 1 134 134 251 98.0 4e-66 MSEYVVKSKLEDKEWQIANQVRDHVFVCDDVKHDAGPNPVEYLCGSVNSCIVMSAGMITK AHQLDVKNFRVENQAQTENLGHGKSVVTEMKIKVFFDSTMTRAEKEEFLAHTLHVSTVYQ TIKAAVKIYVELGE >gi|256541420|gb|ACPV01000054.1| GENE 8 5035 - 6129 997 364 aa, chain - ## HITS:1 COG:SA2061 KEGG:ns NR:ns ## COG: SA2061 COG0477 # Protein_GI_number: 15927846 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 6 356 37 395 403 108 25.0 2e-23 MFVNPLINGYAKELGASSAFAGIIVGIMSLAAMFLRPVAGNLTDKFSKYRLSFIGGALIF VGVMGYVLTPSSGWLLLFRLINGTGYVLCTVCMTTWLAFLVPRQHVGEAMGFYGLMNALA MALAPAVSINIYQKIGYRTSLVASAVSALLMIVAIQFVGDNALPKKRVRTQKKSFKIIQF NVLPVAILTTLFAIPYFVTQADIVTYVEQKHLTVAVGSYFLIYAVVLLIIRVGLKRYFDT VRFGVWFWLSLVSTATYIILLAIMNNDWQMALAAALMASGYGIIYSVLQSTALLLAPIEE QGLASATFYLGLDIAMAFGPMISGVIDSALPIEWFYPVELVLVPLILVVYFIWRKRLNGA IDHH >gi|256541420|gb|ACPV01000054.1| GENE 9 6254 - 6844 658 196 aa, chain - ## HITS:1 COG:SPy0875 KEGG:ns NR:ns ## COG: SPy0875 COG0642 # Protein_GI_number: 15674900 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Streptococcus pyogenes M1 GAS # 3 190 221 408 410 181 47.0 8e-46 MEEMLGNNSEWNESNKEQVAKLTKLINRLISLARTGEMGELTLSKIDFSKIVEETTKDFK SVMKKNDLVYQVSVREGLNVLAEKHTLAEIVNILLDNAQKYCDPHGKIQVKLTKGGTLSK YAVLRVENTYREGKGKDYSHFFDRFYRDDKSHNSKKGGFGIGLAMAQELVEAFHGKISAH HKGEDIVFTVSLKIAK >gi|256541420|gb|ACPV01000054.1| GENE 10 6822 - 7520 805 232 aa, chain - ## HITS:1 COG:SPy0875 KEGG:ns NR:ns ## COG: SPy0875 COG0642 # Protein_GI_number: 15674900 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Streptococcus pyogenes M1 GAS # 1 222 1 211 410 107 28.0 2e-23 MIQKFRWKFIGTSVAALFVVLLLTLGGLVWVTHVQSQNEVDRVLTALVKNEGRLSPKNAK PAFGDQRDPINRNFLGGQYNPEAVYQYRYFAVMIDESHRVHVINDNNVYKVNNSKIQNIT RAALENGDKSGVVALGQNQYAFRVAKNSTGETMIVFLNETLIFNRFWLLFRVALVLGLGA LIVFALVLILVLGKAIKPTVDAYHKQQEFITNAGHELKTPLSEYRNGRDAWQ >gi|256541420|gb|ACPV01000054.1| GENE 11 7529 - 8194 759 221 aa, chain - ## HITS:1 COG:SPy0874 KEGG:ns NR:ns ## COG: SPy0874 COG0745 # Protein_GI_number: 15674899 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Streptococcus pyogenes M1 GAS # 1 221 1 221 222 254 59.0 8e-68 MKILVAEDEPQLLRVLTVAMEHAGYDVDPVDNGLKAVEHAKENSYDVIMLDIMMPVMDGI TALKKIRESGDKTYILMLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLRSKERRED DFTPNKLELGDVTLNVSKQELVSHNSIRLSGTETQLMNYFLLNQNKELSTEELLNHVWKN DIDANADVVWIYISYLRQKLQSIQSSVRIEGDKGDSYKLVK >gi|256541420|gb|ACPV01000054.1| GENE 12 8202 - 8762 558 186 aa, chain - ## HITS:1 COG:SPy0873 KEGG:ns NR:ns ## COG: SPy0873 COG2357 # Protein_GI_number: 15674898 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 9 184 36 211 216 214 60.0 6e-56 MMTQFEQLNKNYEKGHGERLYEHLRGRVKSEASMEGKCKRKDLPLTPQSALRANRDSVGL RVVCNFIDDIYTCIDFIKQWDNVNVYQEKDYITNAKTNGYRSYHMIFDVTVPDEDVDGNI PGHYFVEVQLRTIAMDTWASLEHEMKYKHKIKNPEMIGEELKRVADELASCDVSMQTIRQ LIREED Prediction of potential genes in microbial genomes Time: Wed May 25 05:27:25 2011 Seq name: gi|256541419|gb|ACPV01000055.1| Lactobacillus crispatus 125-2-CHN cont1.55, whole genome shotgun sequence Length of sequence - 2153 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 633 665 ## COG1653 ABC-type sugar transport system, periplasmic component 2 2 Tu 1 . + CDS 819 - 1775 764 ## COG1609 Transcriptional regulators + Term 1787 - 1838 5.1 - Term 1773 - 1828 11.4 3 3 Tu 1 . - CDS 1832 - 2065 323 ## LCRIS_01409 hypothetical protein - Prom 2090 - 2149 5.1 Predicted protein(s) >gi|256541419|gb|ACPV01000055.1| GENE 1 3 - 633 665 210 aa, chain - ## HITS:1 COG:SP1897 KEGG:ns NR:ns ## COG: SP1897 COG1653 # Protein_GI_number: 15901724 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 3 209 2 207 419 251 57.0 9e-67 MKKWLKRIALISLVATMALSLTACGQNKSSNSGKKVTIEYFNQKKEMSATLKEIIKDFEK KNPDIHVKEVDVPNAGTVLKTRMLSGDVPDVINIYPQNIDFQEWAKAGYFEDMTHASYIK NIKNHYADSFKINGKIYNAPLSANVYGFFYNATEFKRLGIKAPKTWAEFEQIVKKIKASG KAPFAVAGTEPWTLNGYHQLSLATVTGGAS >gi|256541419|gb|ACPV01000055.1| GENE 2 819 - 1775 764 318 aa, chain + ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 315 1 316 321 168 35.0 2e-41 MVVTIKDIAKEANVSIATVSRYINQNGYVGIESALKVKEAIKKLGYKTKNTVNTTSKLNL IEVDFPKINNPFYSELFEYLAFYLQEKGYDCILHLDHYQSQDINYYLERFKQKEIAGLIT SSPIKIPKKGLKIKFPIVSFDRKLSPQIPTVQSNNYDAGMQIAQSVLKQKKKKIIIIAGA KEDYYPISDRIKGMIRVFNTFDSKFDLRSLSASDSIIAKKIAILQFLKDDEYDAICCTDD ITALLAKECADYLGKVPLITGFDGSHLIQSLFPNLISARQHTKEIAELMCDLLLRQINDP SVSLESVYTLPVSLINQN >gi|256541419|gb|ACPV01000055.1| GENE 3 1832 - 2065 323 77 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01409 NR:ns ## KEGG: LCRIS_01409 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 77 1 77 77 127 100.0 1e-28 MMTNEKIIALVKEEYLNKIPKIFRKHAVEGTCKLIAREHPDLYKAFEDGEPTAEEKQQMT ELINGIFEQRMKKHKML Prediction of potential genes in microbial genomes Time: Wed May 25 05:27:29 2011 Seq name: gi|256541418|gb|ACPV01000056.1| Lactobacillus crispatus 125-2-CHN cont1.56, whole genome shotgun sequence Length of sequence - 4020 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 46 - 1041 1091 ## COG2017 Galactose mutarotase and related enzymes - Prom 1070 - 1129 6.7 - Term 1111 - 1152 5.2 2 2 Op 1 4/0.000 - CDS 1164 - 2633 1428 ## COG4468 Galactose-1-phosphate uridyltransferase 3 2 Op 2 . - CDS 2652 - 3815 1420 ## COG0153 Galactokinase - Prom 3881 - 3940 7.4 Predicted protein(s) >gi|256541418|gb|ACPV01000056.1| GENE 1 46 - 1041 1091 331 aa, chain - ## HITS:1 COG:lin2619 KEGG:ns NR:ns ## COG: lin2619 COG2017 # Protein_GI_number: 16801681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Listeria innocua # 8 330 11 349 353 160 33.0 5e-39 MKTSFRKYGRKDNKDLCEITLENDHGMVVKVLNYGATLEKVLLDGENMILSLDKPEDYDK ERNYLGGTVGRIAGRVRRGLWRHGLELHQLPINEGPNHIHGGIGTDTEIWNFRPSCNEKG ARVDLTLFDPDGYNDYPGNLKLHARYELDNNNILHYSLGAMSDKLTIFNPVNHTFFTLGE KKMINDLQLQMNADYYIPVDETGLPDRGMEKADGTAFDFRKKKRVGDALEADDPQIKNRD GMDHPFILDGNMPNAVLTSAKHKLTVTTNAPSLILYTGNGFDHTGKYTADFGPYCGITFE AQVPPAEGDDLGRITLLPGEKFKRTVDWKFE >gi|256541418|gb|ACPV01000056.1| GENE 2 1164 - 2633 1428 489 aa, chain - ## HITS:1 COG:SP1829 KEGG:ns NR:ns ## COG: SP1829 COG4468 # Protein_GI_number: 15901658 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 3 485 4 488 491 494 51.0 1e-139 MKVIEKFADEVINSGAYEPLDRVYVINKIRALVGDEASSVEANDEQTSVKQLVDLAVQNK KISDDVTSREVLNDQLYDLITPTPSKTNGIFWQKMQKSPEKATDWFYKLCENNNYVKKEA IAKNVVFSGTSSKGHGLEITINLSKPEKDPKAIAAAAHATGKKYPQCALCLENEGYLGGY GKNARSNLRIIRMNIGGRPWGFQYSPYAYFNEHCIFLDQKHIPMVINQQTLINLVEIEKT LPHYFVGSNADLPIVGGSMLAHEHYQGGRHTFPMMKAKIKKNVVFDDYPEVVAGIVDWPM SDLRLISDNSLDLIELGAKIINFWDHYSDSARQIKAFDGKTRHHTVTPIMHREGKNFVLD LVLRDNNTSENYPLGIFHPHKELWHIKKENIGLIEVMGRAILPGRLKSELEEVKKYWLGQ DNKMAISHKEWADQIKAEQNITAENVDAVMQQALVEVFEQVLQDAGVFKNNADGDEGWDK FITALTRQI >gi|256541418|gb|ACPV01000056.1| GENE 3 2652 - 3815 1420 387 aa, chain - ## HITS:1 COG:SP1853 KEGG:ns NR:ns ## COG: SP1853 COG0153 # Protein_GI_number: 15901681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Streptococcus pneumoniae TIGR4 # 1 385 5 389 392 403 55.0 1e-112 MNKEELLKEYETTFGEKGKDVFFSPGRINVIGEHTDYNGGHVFPAAISLGVYGVYGPRED KKVCLFYGNVDGDIVEFDIDDTTVEKDDRFWANYFKGMITYLREKYDNIDHGFNLYIKAN LPSGSGLSSSAAIEMLMGIILKDEFNLDVDRIALAKMGQRTENEFVGLNSGIMDQFACIM GKKDSAIFLDCNTLDYEYKPLALGDYEIIIMATNKPHTLADSAYNDRVRECHDAVKKLQA KLDIKTLGELDNDTFDEYAYLINNETEIKRARHAVSENQRTLRATKAMQDGDLEKLGRLI DASHVSLHYDYEVTGQELDTLAEASWAQPGVLGARMIGGGFGGSAIAIVKKDQAEAFKKN VGKIYRDKIGYDASFYDAEIVDGTKRI Prediction of potential genes in microbial genomes Time: Wed May 25 05:27:35 2011 Seq name: gi|256541417|gb|ACPV01000057.1| Lactobacillus crispatus 125-2-CHN cont1.57, whole genome shotgun sequence Length of sequence - 21699 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 11, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 1966 1588 ## COG1874 Beta-galactosidase 2 1 Op 2 1/0.333 - CDS 1977 - 3896 2168 ## COG2211 Na+/melibiose symporter and related transporters - Prom 3938 - 3997 8.7 - Term 4002 - 4049 3.1 3 2 Tu 1 . - CDS 4088 - 5092 733 ## COG1609 Transcriptional regulators - Prom 5127 - 5186 9.6 + Prom 5228 - 5287 11.1 4 3 Op 1 . + CDS 5321 - 7201 1424 ## COG3250 Beta-galactosidase/beta-glucuronidase 5 3 Op 2 . + CDS 7185 - 8138 893 ## COG3250 Beta-galactosidase/beta-glucuronidase + Prom 8144 - 8203 11.9 6 4 Tu 1 . + CDS 8246 - 9238 1357 ## COG1087 UDP-glucose 4-epimerase + Term 9301 - 9359 8.9 7 5 Tu 1 . - CDS 9349 - 10119 429 ## LCRIS_01419 abortive infection protein - Prom 10152 - 10211 3.9 8 6 Tu 1 . - CDS 10221 - 10811 384 ## LCRIS_01420 abortive infection protein AbiGI - Prom 10901 - 10960 7.8 + Prom 10965 - 11024 9.5 9 7 Tu 1 . + CDS 11166 - 12197 793 ## COG1609 Transcriptional regulators + Term 12205 - 12253 6.1 10 8 Tu 1 . - CDS 12835 - 15213 1766 ## LCRIS_01422 putative protein without homology - Prom 15237 - 15296 6.0 11 9 Op 1 . - CDS 15319 - 17103 1523 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 12 9 Op 2 . - CDS 17119 - 18534 1456 ## COG0471 Di- and tricarboxylate transporters - Prom 18599 - 18658 8.1 + Prom 18638 - 18697 8.4 13 10 Tu 1 . + CDS 18749 - 19645 552 ## COG0583 Transcriptional regulator - Term 19370 - 19407 -0.4 14 11 Tu 1 . - CDS 19646 - 21460 2053 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 21630 - 21689 9.0 Predicted protein(s) >gi|256541417|gb|ACPV01000057.1| GENE 1 1 - 1966 1588 655 aa, chain - ## HITS:1 COG:BH3701 KEGG:ns NR:ns ## COG: BH3701 COG1874 # Protein_GI_number: 15616263 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase # Organism: Bacillus halodurans # 3 652 5 655 672 651 48.0 0 MTQLKRFLYGGDYNPDQWPEDTWSEDIKVFKKADLNSATINVFSWSLLESREGQYDFSKL DRIIQELSDANFDIVLATSTAAMPAWMFKKYPDVARVDYQGRRHVFGARHNFCPNSKNYQ VLASKLVEKIAERYSNNPHIAVGHVNNEYGGNCYCENCQNAFRTWLKSKYQTLDNLNEAW NMNVWSHTIHDWDQIVVPNELGDAWGPEGSETIVAGLSIDYLRFQSDSLQNLFQMEKSII KKYDPNTPVTTNFHGLPNKMVDYQKWAKDQDIISYDSYPTYDAPKYLPAFLYDLMRSLKH QPFMLMESAPSQVNWQPYSPLKRPGQMAATELQAVAHGADTVQFFQLKQAVGGSEKFHSA VIAHSQRTDTRVFHELEDLGKKLKKIGPTVLGSKTKARAAIVFDWDNFWSYEYVDGISQD FNYMESILDYYCQFYERNIPTDVISVDDDFSQYDLVVAPVLYMVKAGLSEKINAYVKNGG NFVTTYMSGMVNNSDNVYLGGYPGPLKDVMGIWVEESDAIVPGHKTTVSINGKDYEAGLV CDLIHPENAKVLAKYSNEFYAGTAAVTENKYGQGKAWYVGTKLGHTGLMQLFNHIVLTAN VESLVGDSHKLEVTKRVTQSGQELYFVLNMSNEERKLPQKFVKYKNILTGQQAHD >gi|256541417|gb|ACPV01000057.1| GENE 2 1977 - 3896 2168 639 aa, chain - ## HITS:1 COG:STM4299 KEGG:ns NR:ns ## COG: STM4299 COG2211 # Protein_GI_number: 16767549 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 16 450 10 430 476 132 25.0 2e-30 MTHSDKSGKQILSYASFCLGNLGHSAFYGVMSTYFIIFITSSMFSGLNQSVADKLIGLIT GLMVVIRIAELVIDPILGNIVDNTKTRWGKFKPWILIGTLVSAALLLVLFTGIFGLAQKS WILFAILFVLIYISFDVFYSLSDVSYWGMVPALSEDSHARGIYTSLGAFSGTIGWNGLTI IVVPLVTAVTYAVTGKHEEGAPGWLAFAAVISALAIICALIVCFGTKEKHNIIRNSAKQK TTLRQVFGAIFHNDQILWPSLAYLLYSLAYVITNGVLFYMYKFVIGKPNDFWVVGVIATI IGFCISPMFPILNKYIPRKWLFIAGQTCMVLAYVLFIFGRDNVFLMDLGLVLLNINFAQL VTVLTLTDAIEYGQLKNGQRNEAVVLAVRPMIDKFTGAVSNALVGYVAIAAGMTGSATAA DMTAHDISTFNMMALYIPLALAVLSIVVFLTKVTLSEKKHAEVVEELKDQLAEGKIEKNE SNTQVRPQDQTIYAPADGKLMKMAEVIDEDGKPFPGKGFAIKPDSGNIYAPFDGVVRFTF GTKHAFEIVSNNGLQVVVHVGLGTVNLRGEGFETYYDDGQKVKKGDLLLEFDRNLALKNG YQDTVVTFYTQPGRIVKSSEIEAGKIVEHGEKVLDVQFK >gi|256541417|gb|ACPV01000057.1| GENE 3 4088 - 5092 733 334 aa, chain - ## HITS:1 COG:BS_lacR KEGG:ns NR:ns ## COG: BS_lacR COG1609 # Protein_GI_number: 16080470 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 329 1 328 330 223 39.0 3e-58 MTTIKEIAQESGYSSATVSRLLNNDPNLSITADTKNKILEIANKLGYWKDHQEKKIRPTI ALLYRVNHEEQLQDEYFTSLKQALISTVEAESLQMKTFYDADDLIKHASLFQGFIGVGAA PIENATLKKLYEVLPNGVFVDTNPAPELFDSIRPNLTLTIKNAIDLFLDKGYQRIGFIGG VGPKHDHIQEVDVRATAFAEYIKVRGKSDELMFVNGPFSVANGYKLGKEVLAKCKNKLPD AFLIASDTLAVGVLQAFNENNVNVPKDTAILSINNSNVVKYVSPPLSSYNIDQQEMIDMA LNMLTNLIIQPNRAHIDVNMNTNLVVRKSFVPKK >gi|256541417|gb|ACPV01000057.1| GENE 4 5321 - 7201 1424 626 aa, chain + ## HITS:1 COG:BH2723 KEGG:ns NR:ns ## COG: BH2723 COG3250 # Protein_GI_number: 15615286 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Bacillus halodurans # 3 622 5 614 1014 595 47.0 1e-170 MKANLSWLDDPEVFRVNQVPAHSDHPYFKNYREWQKQTSSFVQSLNGDWCFKFSANPQTR PVDFFKTDFDSSSFDHIPVPSEIELNNYAQNQYINTLFPWEGKIYRRPAYTINQKATDSF SKGADNTVGSYIKHFDLNSTLRGRDVHIVFEGVERAMYVWLNGHFVGYAEDSFTPSEFDL TPYIKNKNNILAVEVFKHSTASFLEDQDMFRFSGIFRSVELLGLPETHLTDLDLKPEVTN NYQDGIFNAQLHFTGKNTGSVHLFVEDINGKTLLEKKAPISLTIKIEKELFKNVHLWDNH DPYLYQLIIEVHAENGDLLELIPYQFGFRKIEINSDKVVLLNGQRLIINGVNRHEWNMKR GRSITLTDMKQDIHAFKENNINAVRTCHYPNQIPWYYLCDQNGIYVMAENNLESHGTWQK MGQVEPSDNVPGSIPEWREAVIDRARNNYETLKNHTAILFWSLGNESYAGENIAAMNKFY KAHDHSRLTHYEGVVHTPELKDKIFDLESWMYLPPKDVEEYLKNKPQKPFLECEYMHDMG NSDGGMDSYIKLLDQYPQYLGGFIWDFIDQALLVHDPVSGQEVLRYGGDFDDRHSDYEFS GDGLMFADRTPKPAMQEVKYYYGLHK >gi|256541417|gb|ACPV01000057.1| GENE 5 7185 - 8138 893 317 aa, chain + ## HITS:1 COG:BH2723 KEGG:ns NR:ns ## COG: BH2723 COG3250 # Protein_GI_number: 15615286 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Bacillus halodurans # 7 317 728 1012 1014 145 31.0 8e-35 MAYTNNLHIIYGDATLGINTPDKQYIFSYEKGGLESLKIKGKEWFYRVPTPTFWRATTDN DRGNGFNLKAAQWLGADMFSHCTEIQLKVDQHDFADLPIAPLNNQFSNHEYASKVEITFI YETLTIPKTKVEITYQINNNGHVTIKMRYFGKKDLPPLPVIGMRFIIPTLASGFEYEGLS GETYPDRMAGASAGSFKIKGLPVTKYLVPQENGMHMQTHKLKITRNTTLNNADHSNEDFD LTVEQTDKPFNFSCLPYTAEELENATHIEELPLARRTVLVIAGAVRGVGGIDSWGTDVED QYQIDPSQDHEFSFRLN >gi|256541417|gb|ACPV01000057.1| GENE 6 8246 - 9238 1357 330 aa, chain + ## HITS:1 COG:lin2620 KEGG:ns NR:ns ## COG: lin2620 COG1087 # Protein_GI_number: 16801682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Listeria innocua # 1 327 2 328 328 403 59.0 1e-112 MKVLVVGGAGYIGSHAVRELVKEGNDVVVLDALYTGHRKAVDPKAKFYQGDIEDTFLVSK ILRDEKIDAVMHFAAYSLVPESVKKPLKYYDNNVTGMISLLQAMNDAGVKYLVFSSSAAT YGIPKKLPITEDTPLDPINPYGETKMMMEKIMAWADKADGIKCTALRYFNVAGAASDGTI GEDHAPETHLIPNILKSAISGDGKFTIFGDDYDTKDGTNVRDYVQVEDLIDAHILALKHM METNKSDVFNLGTAQGYSNLEILNAAKKVTGIDIPYTMGPRRGGDPDSLVADSTKARTIL GWKPKHESVDDVIATAWNWHKSHPKGYEDK >gi|256541417|gb|ACPV01000057.1| GENE 7 9349 - 10119 429 256 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01419 NR:ns ## KEGG: LCRIS_01419 # Name: not_defined # Def: abortive infection protein # Organism: L.crispatus # Pathway: not_defined # 1 256 36 291 291 462 98.0 1e-129 MLDDLLERISVSKYRDNFILKGGFLLSAIVGIDKRSTEDIDAEIKGLDLTEKQIAKVSEE ICQIKLAGDLLSISLSEIEQIHEHEEYKGYRLHFNASFRKIRYPLKVDVSTGDVITPREI EYSYKLHLEDRHINIWAYTMETIVAEKLETVITRGIANTRMKDLYDLFILQRERINLATL KSAFANTTNYRESIFWTGQDMDYKYCLRQVDIIAENSNMQNLWNRYVRKHPFAKGITFTQ VIQAVQTWLTKLEFEK >gi|256541417|gb|ACPV01000057.1| GENE 8 10221 - 10811 384 196 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01420 NR:ns ## KEGG: LCRIS_01420 # Name: not_defined # Def: abortive infection protein AbiGI # Organism: L.crispatus # Pathway: not_defined # 1 196 1 196 196 378 99.0 1e-104 MKQKSLISQLAKIHNGTITHRELALNGVSSYSISKAVQDGTLEKIRPGIYLFGDDTEDIF YSLQQKYKKGIYSLETALYLWGLSDQYPFSLDMTFPRGYNNPTLDIEINPHIQTKSLATQ GITQTESFNGNMINLYTPERTLAEILRPINAVDIEIITNAFKMWNKEKKKDINTLMSFAE KFRVTRKVNSYLEVLL >gi|256541417|gb|ACPV01000057.1| GENE 9 11166 - 12197 793 343 aa, chain + ## HITS:1 COG:BH2227 KEGG:ns NR:ns ## COG: BH2227 COG1609 # Protein_GI_number: 15614790 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 341 1 336 347 165 29.0 9e-41 MASIRDIARITGVSPASVSRILNNDPTFRINEASRARVIETAKRLHYSKSQKYPGPKQTD NQLSIALIMRYNKSREITDPYFLNLHKGINEEAKKWHLRIEQPFRIEDDDKNWADLAKFG AVLIEGEMTPAAIKQIQSINPHIIFIDVNTNIHNCNIVRNDFVEETSHILDTLYNLGHKN IVYIGGKSLVLDLDGKIACEKNDLRELTHLSWMKLHNLDQYCHSFITDWSTDSAFEAGKK ILKLQQRPTAVVVGSDPMALGIYKAFNDASVNIPNNISVVSFDDVDINRFLTPTLSSVYM NTEEMGKTAVRLAKDLITEYIQIPLTITCHSQLNIRDSISKKK >gi|256541417|gb|ACPV01000057.1| GENE 10 12835 - 15213 1766 792 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01422 NR:ns ## KEGG: LCRIS_01422 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 792 1 792 792 1465 97.0 0 MSRKSKFSYEAKLKAVKQFKTKIDLLDDPQHKYLIYAPYERPKIQENHLTDMEHYSKLFT ADATQIILEELNLPENKLSFVKRYHTYFGAKTRRSDFVKYWSEDFESNPEKGIIAAITKT EKLDMNELLMKIIAAGSSNNRYLFSFVKYNVLDPFWKLIGNYFGYDTEENVSLLDLFNRL FVTYLANELSSKLPHKLQELVLKNKDNVQIFIDRFADSNKYQEYYDNESTRVWVDLELHD LLVQEALSDLTQVTIFDEVNDLILAKIRSKFVGNQVTDYEQVLEIIDQMLKRTRNNFANR TENEYKFLRYAAELLNLRVPLVENWQKELSEYLDNEYQIDTIYRKCLLAYTRIADNDEYA EIKKTVDLYYGNGLLNSSVKQWNETFDLAQVPAKLRQERFYHNYVKHVRERVVVIFSDAL RFEVAKELEEELNSNDRLTMKMQYALTGLPSVTYTGMNVMLPHDALTWDAKAGKVRVDGK NAETTPNRDKILKVVDESNSATQLKDILEMTSKEIKQFITGKKVIYLYHNQIDAKGHELK TTKELVDATEKAIAEIKAAIQSLRTNGVAHIIVTADHGFIYQERPIQDTDKIDLSDQSYE GNAHLRYLITPDKISVKGVKGTTMGVGLGNNDQTNVYYPTSPNEFVAKSGSKNYVHGGSS IQEMLIPVLDIKATSRRSAAKPAEIKLAATTFKINNLKMNLLFNQTAPVSDVVLPTQYHV YFTDEDGKLISNSVTIEADRKGSAADRTIAVTITIQDAQYDINKNYFLVVERDGSDEDPQ RFKYTIDLFTRG >gi|256541417|gb|ACPV01000057.1| GENE 11 15319 - 17103 1523 594 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 11 470 39 477 484 86 27.0 1e-16 MIYNSSLKWDKVYDVIVVGFGGAGAGAARFAADNGAHVLLVDSAPEGSEGGNTRYAGGAF AWGSNFDDLKDYYKQTYYPFKYDEKDLDAFVENVLKMKEYSKKYFGIEAKATGRRPKGEY PEYRHGDAMQSQSMTQGMYNGGFWKLLRKKVYERLDRIDIWFDSPVEHLIQSPKNQTIMG VVINRNGNKRLVAAKNGVVLSCGGFENNQAMVQDFLGQGSLAPIGSLYNQGKGIDLAVEA GARLWHMSNYDSHGLSLRQNDPREKFAYMINWKSLFNGSIFVAGDDGTRYFREDEEDRHG YKYNHGNWIMIPNQNHPHIVMDQRQYEQLSNDTSAKASQIKELISYAIKANTIEELAENI SAPRLKQEVADFNFLTDVKKRDMFLHRKIDTMRSFGKGPYYAIPVRHNILHTHGGAKRNE NCEVIDLNGKVIPHLYEAGELGDIFATKYIGANSIADLLISGKIAGENAAKPKDQEVELD AVTGASKVADLKSDAHTMIANFDAGKNQGIGISSNGISDLPIVVRVTLNDKNQLKKIETL QQKESPSLGGKAIPVLTKAMIANNTTDVDTVSGASVTSHAFQEAVSDALKHIQK >gi|256541417|gb|ACPV01000057.1| GENE 12 17119 - 18534 1456 471 aa, chain - ## HITS:1 COG:SA2486 KEGG:ns NR:ns ## COG: SA2486 COG0471 # Protein_GI_number: 15928280 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 1 469 1 470 472 438 52.0 1e-123 MLDKFQWKKWILPLVIGIVLWLVTPFKPTDISVPAWHLFAIFVATIAACITKPLPMMATT LIAVVIATLTGIFNMKEVAAGFGNSTSWMVAMCMFLAAGFIKSGLGKRIAYIFVRTFGKS TLGLAYALSFVETVLAIGIPSNNARVNGIMYPIIDGLSREMGSDPEKGTQRKLGSFLVFN EYEINNVTSGMFLTGLAGNMVALGLAKTQGIEISWMEWFLAAIVPGLISLLVVPFLLYKV YPPEVKETPNAHAWADKKLTELGKMTAAEKIMSVVFVVAILLWLVGPHIGIDATETSFIA VALLLITGVINTKDILNESFAWNILTWLSVIMLMSQKLMTLGFFPWFSKTLGAGLKGMNW VLVLVVLWLVYFYLHYLFPSVSTQISALYAGFLSIALGAGVPKIMAALMLAMCGTVYLST STYSAGPAAMVSSTGYISNKDFWKLSAIIGVVFNIIWLGGGLLWTKVIGYW >gi|256541417|gb|ACPV01000057.1| GENE 13 18749 - 19645 552 298 aa, chain + ## HITS:1 COG:CAC1588 KEGG:ns NR:ns ## COG: CAC1588 COG0583 # Protein_GI_number: 15894866 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 5 292 1 286 293 100 23.0 5e-21 MEFMMNNQDLMYFCKLIETGSYTKTATFFNVTQPTISAAVKRLAKHFKDPLVEQVNRKGK LNTTTAGDLLYNKSVKLLHEINSVNYDVMHASEKKIRISFSGVAGSMYIPEVIAQFHHAN IMSMLDTHLERSADIFESLTNGDIDVAIYSWMVPINDSNYYIRNLNKTELVIITGLNDPG ANKEQVKISELSERYFIARSEGYLTRECLDQEAKLGNFSPKIIFTARTMQLMIDLVSQNV GIALAMEDTLKDRRDLHIIHLIPDQRLWAYMQIAMRKSFIPNDYQKKGIDILRHFREN >gi|256541417|gb|ACPV01000057.1| GENE 14 19646 - 21460 2053 604 aa, chain - ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 165 486 201 501 506 111 29.0 3e-24 MKNVKNIKWNASYDVLVLGFGGAGGTAARFAADNNAHVLLVDVAPYGHEGGNTRYSAQHV AMAHDREKIGKYFDQLAEPYSYSKKTMDVYLDGFVNMPEYFEKYFGIKPFIWGDDFREGD ALDHKDHLCEYPEFEGSDTFDFALVHNRDFDAGLWKKIRKEVADRKDKIDVWLNSRALEL IQDPETDQVVGAIVERNHKRYFIHAKNGVVVSTGGFENNPQMQQDYLHIHKLTPLGTLYN RGDGVKMVQSVGAKMWHMSNYESLGIIPSYVIAEEEGTRGRQIGGWKNVKSGSVIAVAND GSRFMKEDAKFRHGHIYDHGEYNMPHAFDNAWLVFDQKQYQKFVEEKESGKLRYNKLFDK MINATSVSELADKMNVPAKNLTATINQFNEFAKNGKDLEFGRATDSMDEISTNKLYALKL APAVLNTQGGAEHNEKAEILNNNDQPIPHLYSAGEMGGMCVNRYQGGGNLAECLIFGKIA GEQAAKMKSDTQEVKLENAVPSVNDLIAGDKIDNIELGPDQYVGSTEAGIGDRIVVRVTY KDKKIKNVEVLENHETEGIGAVAIQKLPDEIVKVNSTEIDGVSGASTTTRAVEEAVNKAI KKAK Prediction of potential genes in microbial genomes Time: Wed May 25 05:27:55 2011 Seq name: gi|256541416|gb|ACPV01000058.1| Lactobacillus crispatus 125-2-CHN cont1.58, whole genome shotgun sequence Length of sequence - 12053 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 5, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 60 - 935 173 ## PROTEIN SUPPORTED gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 + Term 939 - 997 9.5 - Term 935 - 977 7.0 2 2 Op 1 . - CDS 998 - 1534 499 ## LCRIS_01632 putative protein without homology 3 2 Op 2 . - CDS 1678 - 1836 125 ## LGAS_0931 hypothetical protein - Prom 1861 - 1920 3.7 - Term 1916 - 1960 6.7 4 3 Op 1 1/0.000 - CDS 1981 - 2688 827 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 5 3 Op 2 9/0.000 - CDS 2704 - 3075 532 ## COG3412 Uncharacterized protein conserved in bacteria 6 3 Op 3 10/0.000 - CDS 3072 - 3656 725 ## COG2376 Dihydroxyacetone kinase 7 3 Op 4 . - CDS 3669 - 4664 1111 ## COG2376 Dihydroxyacetone kinase - Prom 4721 - 4780 6.3 - Term 4847 - 4908 13.9 8 4 Tu 1 . - CDS 4914 - 9629 5146 ## COG1404 Subtilisin-like serine proteases - Prom 9683 - 9742 11.0 - Term 9743 - 9809 15.0 9 5 Op 1 2/0.000 - CDS 9862 - 11079 1269 ## COG2182 Maltose-binding periplasmic proteins/domains 10 5 Op 2 . - CDS 11083 - 11748 566 ## COG1609 Transcriptional regulators - Prom 11874 - 11933 3.5 Predicted protein(s) >gi|256541416|gb|ACPV01000058.1| GENE 1 60 - 935 173 291 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 [Roseobacter sp. AzwK-3b] # 1 244 1 242 305 71 25 3e-12 MEFRDLKYFQKLVETKNYNRTAEFFGVTQPAISSMVKRLEKEIGTQLIFQAHNHKRMTIS PAGLVVYRNAKGLIQKERSIILEAKRANENSFRLGYSELTGKEWLASVITQLNQGHLLAS VETHEENSHYLEQHLREGRYDAIVFSRLDNEKLPGIKLTTLETFQYNLVVPSNNPLAKQK EIDLFQIADIPLIMRHKRFLSRTALEQIFTNTNFKPKKKLVVDSIDATLQLVKQNMGVGF LMDIAAKNYPGVKSIPLIPSQQIYCYSTLGIREDFMPNKIQAKCLSILKGF >gi|256541416|gb|ACPV01000058.1| GENE 2 998 - 1534 499 178 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01632 NR:ns ## KEGG: LCRIS_01632 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 121 53 173 175 205 82.0 6e-52 MEDGFLRRRQEYEELHAAYVIFILPFDPKGKGLKRYSFVYTAKEDPSVELNDGSEIIYLN TKGTKGKVKPGLDDLYRLIEGKPTSNGKFISRVKETMNNYRRTEEWRKHVMNTEEVAEAA KQLGMEEGKKEGLITGVQNLISVLRDYGEDNQNILQQLKQKYGNTFSDKQLEDFLKQS >gi|256541416|gb|ACPV01000058.1| GENE 3 1678 - 1836 125 52 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0931 NR:ns ## KEGG: LGAS_0931 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 52 1 52 277 71 69.0 1e-11 MSKDKKLNVAEVLGFTDDLMFQNVMKDPEICRMFLNEVLPHLDIKDLTVHTQ >gi|256541416|gb|ACPV01000058.1| GENE 4 1981 - 2688 827 235 aa, chain - ## HITS:1 COG:lin1131 KEGG:ns NR:ns ## COG: lin1131 COG0580 # Protein_GI_number: 16800200 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Listeria innocua # 1 234 1 233 234 219 52.0 5e-57 MSGFIGEFFGTLVLIVLGTGCGAAINLQKSYAKGASWLYVTIAWGMAVTFGVYVAASLGS QGHLNPAVTIGFASFGFFPWSEVGPYLLGQFLGAFVGAALVAIQFYPHFKATKTSEAGNN VGIFATAPAIKNNLFNFLSETIATFIFVFALLNLGDFDKGLKPIAVGLLIMVVGQALGGT TGFALNPARDWSPRLAYTVLPIPNKSSANWSYAWVPMVGPIVGGVLAAGLQAVLK >gi|256541416|gb|ACPV01000058.1| GENE 5 2704 - 3075 532 123 aa, chain - ## HITS:1 COG:BH3395 KEGG:ns NR:ns ## COG: BH3395 COG3412 # Protein_GI_number: 15615957 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 3 122 6 125 128 122 53.0 2e-28 MSLGITLVSHVSDIANGLPKLLNQVAKDVPITAAGGTNDNDIGTSMEKIMTAFDENTTDE ILAFYDLGSAKMNLEIAMEMTDKKVHLYDAAFIEGAYTAASLIQAGVGLDDIEKQLKPLI IKD >gi|256541416|gb|ACPV01000058.1| GENE 6 3072 - 3656 725 194 aa, chain - ## HITS:1 COG:lin2844 KEGG:ns NR:ns ## COG: lin2844 COG2376 # Protein_GI_number: 16801904 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Listeria innocua # 1 191 1 196 198 181 50.0 7e-46 MALTTDTLTIWMNKFADKVNTNKQYLSDLDTPIGDGDHGFNMDRGMTAVKEKLATKPADL TSGFKTIAMALISTVGGASGPLYGTAFLEMAKKSASTNDIGELLDAALAGIEMRGGAKPG DKTMVDVWNTLVPEVKSGNLTEEKIKDAVETTKDMIAKKGRASYLGERSKGHIDPGSQSS GYLFEAMFETEGLL >gi|256541416|gb|ACPV01000058.1| GENE 7 3669 - 4664 1111 331 aa, chain - ## HITS:1 COG:L45677 KEGG:ns NR:ns ## COG: L45677 COG2376 # Protein_GI_number: 15672230 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Lactococcus lactis # 15 331 1 315 316 414 65.0 1e-115 MKKIINDPHDVVPEMVDGMTRSYPQYIEKIEGTEAVVRADKASMKDRVGIISGGGSGHEP THAGFVGEGMLSAAVCGQVFTSPTPDQIYAAIKAVNQGKGVFMVVKNYSGDVMNFDMAKD LASMDNIPVKSIVVDDDIAVENSLYTQGRRGVAGTIFMHKILGAAAEQGASLDEIEALAK KVLPNIKTIAVALSAATNPEVGKPGFVLKEDEIEYGVGIHSEPGYRREKIKPSKELVDEL IGKLNDEMHLDSSKKYACLINGMGATPLMEQYIFSNDVLNKLETFDIEPSFMKVGNYMTS IDMAGISLTLFEIQDDKWLDYLNYPVKTIAW >gi|256541416|gb|ACPV01000058.1| GENE 8 4914 - 9629 5146 1571 aa, chain - ## HITS:1 COG:SPy2010 KEGG:ns NR:ns ## COG: SPy2010 COG1404 # Protein_GI_number: 15675796 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Streptococcus pyogenes M1 GAS # 386 819 465 935 1181 131 26.0 1e-29 MSNLTNPNDHKDLSFLFKSVDRLAALETQKKADTIISVRKKWVAAAMIALASGSTVLLTS NTANAATSDVNSEVQVTAQNQNTTENKMQAGDTANSHDTEQNVTVQANSSQQSNQEANTA DQNNTPENDNQVQTPTNQADHVKGNVQSAWDQGYKGQGTVVAVIDSGADPSHKDFQTMPE NPKLSKDDIQKKIEQQGYGKYVNEKFPYVYNYADRDNDYITSDDTNSNDSPHGQHVSGII AADGKPDGNKEYVVGVAPEAQLMQLRVFGQFSDEKTDDVAKAIYDATNLGADVIQMSLGQ GVADQQLTNIEQKAVQYAIDHGVFVSISASNNGHSGSVDNTSNVTSVESYESGSADGNYE PLNSSTVANPGASKNALTVAAETSATGKDSDMAGFSSWGPVQDFTLKPDLAAPGYQVVST VNNNNYQTMSGTSMAGPFAAASAALVMQRLKKTNPELKGAQLVAATKALLMNSAKPQTQN GYTTPVSPRRQGAGQIDVGAATSNPVYVIADDGTSSVSLHQVKENTPFTLTFHNLTDQEQ VYTFDDFGGGYTEQRDSNTGVYHDVQLAGARVYGENSFSLAPKETKQVTYSLNLNGLNNN QLVEGFLRFTNTNDKSTVSVPYLAYYGDLTSENVFDQNANEEHPDIQGNRFVNEQSYPRG VADQESLKQLVNVEGDYNWQEVAKLYESGKVAFSPNNDNKSDLLKPYTYLKQNVKDLKAV VLDAQGNVVRVVADVQGVDKSYDENGVTKDTSLSVSMRDNPDAFEWDGKVYNSKTGQMEV AKDGNYTYRLVATLWNEGPHQVQTADFPVVIDTVAPTLSNVKYDEATNTLSGEYQDTGAG FTNYSYATVTVNDKVFGYKLSDGQSAFDNAEKTKGHFSFTLDKDAVAALSGAKNKVSVVL SDVADNPVVYSVNVAGKDIDKPAVSVWNATNGLAFDQSSTSYNKDTKTYTLIGGANQDFY LNGKLVQVQNGQYSVPVDVNSTNLVFSTDAAGKNVLKNFSTVTPKAFFNWQVTDTFAGNF GVSINSVETNRKDDVVVQAAVPKGENIQAFAKDYFTGELYTGEVNDGVATFHVHTSINGG RRALLTGWTVVNGPSYNDKQETSQRGVASSNHLGVYYEVDAADRPVYTNRNQLGVEVKDE AANVDAFGPGAYPGHAPSDLTTRTASNPNIHFDYMNDNDTTRFGQNAVLKGYYDPTTMKF TVTGNVDDNVTSLTVLSDSSNENDPANQVKLDQNGKFSFAVTANSTGQRPIAYLYRTKDG QTVRGTLNLILDTVKPTLEVNQVNGNELELWTNNPKFVLSGKVNDNLDGYRLYVNGNNIY REFLNSGYNRLEGLNTDTELTNPYGDHEFEQVENLNDNNDQPTTHIFTVNVVDQAGNTVT KKLTVHFDPNYVVPTDNTDVVVDTSTSDTDGVTETKPIDPLVGKSFKLLHNAYLYDQNGE VVLTDVENAKSLLKKGQTIVALDNAKVTFINGVKFYRVGNNTFVKTANTVLQAPKRLKLT HNAYVYDQKGNVVKKHGKKVLLKKNQWISALNNADKYVIKGRLYYKLADGQFVKVANTVT KKAKLRKTVVS >gi|256541416|gb|ACPV01000058.1| GENE 9 9862 - 11079 1269 405 aa, chain - ## HITS:1 COG:L128695 KEGG:ns NR:ns ## COG: L128695 COG2182 # Protein_GI_number: 15673665 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Lactococcus lactis # 1 404 1 407 410 313 46.0 4e-85 MKLWKKVLMCSSVVLAGLTLGACSNDNSNSTSSNDNKKPITLWVATDYVPWYKTSVKQFE KKYPQYKVKVAQSPNGTANAKTDVGKDPTKAADVFAVPNDQLGSMADAGYINPLSPKDVA NIKKNDTAVAYKASQWKGKLYGYPYTADVQFLYYNKSKLSASDVKDWDTLTKKGVVATDF SNAYNIWPVMFSAGTKLFGDSGEDLKGSTMDSQNGVNGLKWVAEQKNNKGVMQTTNALNQ LKLNHAQAILDGPWDAQNVRKILGKNFAVAPYPTITINGHKKQMQAFLGIGCFGVNSHTK NVKAANALAEFLTSKEQQLIVHTKTGETPVNKAAQATAAVKNDKVADAVMTMSKPGYSVI MPKMPQITTFWNESAPLLSGVYDHKVKPAQYRAKLAKLQKDISKK >gi|256541416|gb|ACPV01000058.1| GENE 10 11083 - 11748 566 221 aa, chain - ## HITS:1 COG:SP1799 KEGG:ns NR:ns ## COG: SP1799 COG1609 # Protein_GI_number: 15901628 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 5 221 119 330 333 89 30.0 3e-18 MAALNQVAGVITMSYSDLYNFIDFKKKLNLVSIERFVAPEVPLISSDNKAGGRLAAKKLI EMKKKNILLIRRDVHHYNATDIRAKAFKEYMRGKKVKVDEFSASLKDTYRQEIVEFLKQK LTSKQYDGIFAVTDEYALVAKEAIGVIQPDLLKEIEIIGFDGARGSKESRIKVDSIQQPI EDIVKEAVSVLIRKVKGEEIGNNYKKILPVSFVKAEKLMGE Prediction of potential genes in microbial genomes Time: Wed May 25 05:28:02 2011 Seq name: gi|256541415|gb|ACPV01000059.1| Lactobacillus crispatus 125-2-CHN cont1.59, whole genome shotgun sequence Length of sequence - 2434 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 - CDS 1 - 250 217 ## COG1609 Transcriptional regulators 2 1 Op 2 . - CDS 243 - 2432 1615 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases Predicted protein(s) >gi|256541415|gb|ACPV01000059.1| GENE 1 1 - 250 217 83 aa, chain - ## HITS:1 COG:TM0949 KEGG:ns NR:ns ## COG: TM0949 COG1609 # Protein_GI_number: 15643711 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Thermotoga maritima # 1 80 1 81 332 61 44.0 5e-10 MSRKPTMNDVAKLAEVGRGTVSNYINGQKVKEENRLKIQKAIDELGYVPNLQAKELRTSI NTEVVFIVPTNWTPFFSEMIFYM >gi|256541415|gb|ACPV01000059.1| GENE 2 243 - 2432 1615 729 aa, chain - ## HITS:1 COG:SP0312 KEGG:ns NR:ns ## COG: SP0312 COG1501 # Protein_GI_number: 15900245 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Streptococcus pneumoniae TIGR4 # 56 725 1 678 679 637 47.0 0 GDTYRFTVITDSLIRIEQDNSGIFEDHPTTAVLHRNFKKVNAEILKNHNNHIVEIITDAF HLYYDGGTFAPDTLYADIKVSQALHVSRWHFGTENAEGTNNLKGTARTLDRADGEIPLEN GIMSKDGYSYFDDSSSFIYDKKNDKYYPRSNDSVDGYLFTYGHAYQEELQDFYELTGKTP LIPRFALGSWWSRYHPYTQEEYKKLVETFEQKKIPISVSVIDTDWHREDDVPAKYGSPWT GFTWNKNLFPDHIKFLSWLHQHNKHIGLNIHPADGIRAFEDQYPVVAKDMNLDTESEEPA AFDLENKQFRGAYFKDVLHPLENEGIDFWWIDWQQGYSLSDKKLDPLWLLNHYQFEDIAK RKPDEAIILSRYAGVGSHRYPLGFSGDTVISWKSLAFQPYFTSTASNIGYTWWSHDIGGH MMGESDGELTTRWLQFGVFSPITRLHSSNNLFSGKEPWNFRMDYEKYQEKFLRLRSKLVP YIDTANYQTHENGIPIVKPLYYDYPESDEAYENKNEYLFGSEMLVSPVTRPHDKATQEAY STTWLPKGEWVDYFNHLLYKGDTTIKTYRDCSQLPVFVKKGSLIVTNPDYMEDIDKLPET LDVEIFPGKNSSYCLVEHIKNKVAKTTFEWNNQTRILTINVDDPADIIPENRQIHQKIIN YQKSDVIKEAYRRLQTAQTSFELKQKLYLAFSSDKYQYANFINMLNNINDENLRNSLSEL AYSREAYHE Prediction of potential genes in microbial genomes Time: Wed May 25 05:28:03 2011 Seq name: gi|256541414|gb|ACPV01000060.1| Lactobacillus crispatus 125-2-CHN cont1.60, whole genome shotgun sequence Length of sequence - 6675 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 106 - 165 11.6 1 1 Op 1 . + CDS 356 - 1576 1126 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 2 1 Op 2 . + CDS 1569 - 1937 234 ## LCRIS_01447 hypothetical protein + Term 2002 - 2049 -0.2 3 2 Tu 1 . - CDS 2271 - 4370 1507 ## COG1982 Arginine/lysine/ornithine decarboxylases - Prom 4405 - 4464 8.0 + Prom 4323 - 4382 3.6 4 3 Tu 1 . + CDS 4550 - 5998 1038 ## COG0531 Amino acid transporters + Term 6019 - 6058 7.3 Predicted protein(s) >gi|256541414|gb|ACPV01000060.1| GENE 1 356 - 1576 1126 406 aa, chain + ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 1 401 37 426 426 321 42.0 1e-87 MKACLVVISRQPDAPWGSGLIMAASPLAKKKYNLHNVMRARNLPSKKEAPDLMLVDPHMN LYIKRSMQVLDIFRKYAADEDIHMYSIDEGMIDMTTSWKLFGNDPYNVAHKIQKDIHDTL GLYTTCGIGENPLLAKLAMDNEAKHNKSMVAFWHYIDVPDTIWRIPKLEDVWGINTRTAN HLRRIGINNVYQLAHTDPAILKKEFGIIGEQLFAESWGVDRSIISHKYHPKTKSYGNSQV LQRDYSQQREIEIVIREIGEQVGARIRAHNLCAGKVSLYIGFSLSELDYDNDRDGFNVQR KITPTNVNHELVQTLLAIFRKNWRGEAVRRIGVSYSELVPDHSMQLNILEDPELQIKRYK LDHVVDKLRKKYGFSAVVKASSLSKGATAIQRSKLVGGHNGGNAYE >gi|256541414|gb|ACPV01000060.1| GENE 2 1569 - 1937 234 122 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01447 NR:ns ## KEGG: LCRIS_01447 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 122 1 122 122 221 98.0 5e-57 MNKNAFDQKLDEFFRNYQDSGMKKWSGFFLSDHTVKISKSNIERNTNYFKKSEMTVDKIS EILLDSFCNHKLISLQLKDLDENGNLSPDIKGFVEGYYDQETIIVSGSKLPLEAINHVQI IS >gi|256541414|gb|ACPV01000060.1| GENE 3 2271 - 4370 1507 699 aa, chain - ## HITS:1 COG:HI0591 KEGG:ns NR:ns ## COG: HI0591 COG1982 # Protein_GI_number: 16272535 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Haemophilus influenzae # 5 686 1 701 720 601 42.0 1e-171 MEGKMHYLRIAARKDLLPYLPKNWPTTELKENLNGAYLAAVVVRKKDSRGVGMQKVFAKQ LKLDLPLIIWEDNQDMIKEIDQKASQYETNVIPEFLRDLTKFADQDDLILSTPGHHNGHF YDRHPAGAVMKEFFGHNLFKADVSDSVFELGDMMTHEGGPLKAEEEAAKAYNADKVYFCT NGTTSANTICATAVLKNNDLVLFDRNNHKSLYNSALIMTGAKPVYLPTDRNADGLIGPLT KESLNENKIREEIAKVDPDRAKVKRPFRMAVLQLETYDGVFYNAKYLIEKLGRLCDYILF DCAWGGYEQFVDVLRDLSPLQLSYGPDDPGILVTQSIHKQQAGIAQASQILKKDGHLKGQ KRYVDHKHFNHAYLKYVTTSYSYPIYSSLVVNAKMANSPACKSWWDDTVKLSIKFRKRLL KESKLFRPLVPLKINGKKWQDISTEVLMHDKQAWKLSPSDDWHGFNKIDDNEVVLSPLKL TVLNPGIDLSGEEYAEEGIPGVILENYLHEEHIIPEKSDIYSTLYLITPGESNVDMETLF DALMRFEHAYLDKQALSEVMPQLVKKFPDRYKGYTLYQLCQEMHQYYKQNHIFELERDLF LKTTFQDYVMKPGQADFDFNENKSQLVELDNLKGRIALEGALPYPPGVFIVAPGEKWQQI DIDYFKILLGAAATFPGFEPEVQGVYKDSGKIVGEVLRK >gi|256541414|gb|ACPV01000060.1| GENE 4 4550 - 5998 1038 482 aa, chain + ## HITS:1 COG:STM0969 KEGG:ns NR:ns ## COG: STM0969 COG0531 # Protein_GI_number: 16764329 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Salmonella typhimurium LT2 # 5 473 3 470 473 281 35.0 3e-75 MTEENTQKHYMGWITLSMFVYITVISFEDPFYPYQEYGLFVLVLWIIMLLFYQLPYTLIA TELGSAYEGEEAGGMSSWIRRGTGSDLLGYATGWMYWAQTIPYLIDCASSVVVSISWVIL GNRSLSQKMSPMVFSFITFLIILLFLIFDNTVKDALDATSLWSGIAMVVMTLVFFGMIVW SLSHGGHIATKLTWNNIKPHLSLHYFSSASMLIFAMSGAELAAPYISRLRNPQKEFPKTM WLLFFVTALMVILETLGLAVLFDAKHIPNDFKMNGDYFAFQLLGREAGMGNSLMLAYSIV CLVSLLAQIAALIDAASRFLASDTAVKYMPSWLLKKNKNGRPINSYIFTAGTTLVLIVLG GTLPKINDFVNWLLNINTIVSPYKTAVVFLCFLILRYNRKHFGKNEFVFIKNRKGALAVG WWCFLLTFICATMAFLPQNGQFGTPKWFHQLWMNIVVVLFLFGTGFILPLLRKWEVKRKM KI Prediction of potential genes in microbial genomes Time: Wed May 25 05:28:12 2011 Seq name: gi|256541413|gb|ACPV01000061.1| Lactobacillus crispatus 125-2-CHN cont1.61, whole genome shotgun sequence Length of sequence - 20078 bp Number of predicted genes - 20, with homology - 20 Number of transcription units - 9, operones - 4 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 194 - 241 3.5 1 1 Tu 1 . - CDS 254 - 1888 1336 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 1911 - 1970 1.6 - Term 2577 - 2620 3.0 2 2 Op 1 . - CDS 2642 - 3409 555 ## LAF_1481 hypothetical protein 3 2 Op 2 . - CDS 3446 - 3769 204 ## LAF_1481 hypothetical protein - Prom 3980 - 4039 5.7 - Term 3917 - 3958 2.5 4 3 Tu 1 . - CDS 4091 - 5242 881 ## COG0675 Transposase and inactivated derivatives - Prom 5262 - 5321 3.5 5 4 Op 1 . - CDS 5404 - 5682 279 ## LBA1450 hypothetical protein 6 4 Op 2 . - CDS 5692 - 5886 220 ## gi|227877709|ref|ZP_03995745.1| hypothetical protein HMPREF0506_0746 7 4 Op 3 . - CDS 5934 - 6269 418 ## COG4226 Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters 8 4 Op 4 . - CDS 6269 - 6514 126 ## gi|256843567|ref|ZP_05549055.1| predicted protein - Prom 6552 - 6611 8.5 - Term 6860 - 6894 4.5 9 5 Tu 1 . - CDS 6917 - 7906 1087 ## LCRIS_01449 hypothetical protein - Prom 7947 - 8006 11.0 10 6 Tu 1 . - CDS 8051 - 8923 768 ## LCRIS_01450 ABC transporter - Term 9191 - 9237 8.8 11 7 Op 1 1/0.000 - CDS 9255 - 10592 1779 ## COG0174 Glutamine synthetase - Prom 10612 - 10671 6.3 - Term 10668 - 10710 6.5 12 7 Op 2 . - CDS 10728 - 11978 1490 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance 13 7 Op 3 . - CDS 11971 - 12891 721 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase - Term 12909 - 12966 7.0 14 8 Op 1 1/0.000 - CDS 12969 - 13370 463 ## COG0607 Rhodanese-related sulfurtransferase 15 8 Op 2 3/0.000 - CDS 13428 - 13667 245 ## COG4483 Uncharacterized protein conserved in bacteria 16 8 Op 3 4/0.000 - CDS 13667 - 14353 631 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 17 8 Op 4 3/0.000 - CDS 14387 - 14950 543 ## COG0212 5-formyltetrahydrofolate cyclo-ligase - Term 14960 - 14996 4.2 18 8 Op 5 1/0.000 - CDS 15005 - 15154 263 ## PROTEIN SUPPORTED gi|58337773|ref|YP_194358.1| 50S ribosomal protein L33 19 8 Op 6 . - CDS 15230 - 17275 2320 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 - Prom 17360 - 17419 7.4 + Prom 17347 - 17406 7.2 20 9 Tu 1 . + CDS 17426 - 20065 1471 ## COG4485 Predicted membrane protein Predicted protein(s) >gi|256541413|gb|ACPV01000061.1| GENE 1 254 - 1888 1336 544 aa, chain - ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 543 1 548 549 305 32.0 2e-82 MRINKKVVSFGLIALTTATLAACGKQSDSNTVSKKQVLNWSEITQLSTQDPSLATDTTSF QALLNTGDGLYRLDKNNKPQLSLATKAKTSNGGKTYDFYLRKTAKWSNGDPLTAKDFVYS YKRTVNPATKSQMAFYLYQIKNAQAINKGQKSPDTLGVSAPSKYHLRIQLTRPLPYFKIL LSWPLFFPQNQKVVQKYGKLYGTQAKYTVSSGPFTLTRWNGNNKTWTLIKNKNYWDAKNV KLNKVNEQVSESTTTSYNLFEAGKADETGLTGEQVAANKNKAGYHARLSSAIKRLELNEN KVSAFKNLKVRQAFSLAINRKQLTNNVLKDGSIPAKGFVPSGMGNNPKTGTPFEDDAYVK SAVSYNLAKAKQLLREGYKESKTNSIKITLLVSDDDTSKQTAEFLQSKLDQLPGVQISVQ TIPYTQLISRQTAGNYQATIKNWQAVFGDPINFLDVFQKGSSYLNNGWNNNQFNKLLNES ENVYGNQPVKRWARLVEAEKVLMKDQGTIPLVQVAKPQLLKTTVKGVSFNPTGVPYDFKN VRIG >gi|256541413|gb|ACPV01000061.1| GENE 2 2642 - 3409 555 255 aa, chain - ## HITS:1 COG:no KEGG:LAF_1481 NR:ns ## KEGG: LAF_1481 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 1 255 113 367 367 358 65.0 7e-98 MKKQNPDFMFFQKIDTDSTRSFHVNQVKKVEDDFPKMDSTFASNFHSAFLAVPLNNPHGT VRSGLLSMSKYKMDSAIRRKYPVSSGPIERFVDLDRCFVVMRFPVTNGKDLVMINSHMSA YDKGGKMRKAQMKLISSVMEKEYRRGNYVIVGGDFNHALGKDMMTHFEHQEEIPSWVSVL DQKMLPKDFTMIKAQNRENVATVRATDMKYDPKVNYMTICDGFIVSKNVQAKAYNINTHF EYADHNPVRLEFELK >gi|256541413|gb|ACPV01000061.1| GENE 3 3446 - 3769 204 107 aa, chain - ## HITS:1 COG:no KEGG:LAF_1481 NR:ns ## KEGG: LAF_1481 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 12 107 4 99 367 113 56.0 2e-24 MIQLEKSKYESLKKVGLALLSVILACVIIFCGYYIYLALHYYRIPDNQRLKINNNQSQLL KAGRSYKATTYNVGFGAYNHDFDFFMDSGQLKDGKKLQGHRGTAISK >gi|256541413|gb|ACPV01000061.1| GENE 4 4091 - 5242 881 383 aa, chain - ## HITS:1 COG:TM1044 KEGG:ns NR:ns ## COG: TM1044 COG0675 # Protein_GI_number: 15643802 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Thermotoga maritima # 1 379 4 370 405 123 27.0 5e-28 MIKTQVAELKPNKTMQRELDRLCDYRRYCWNLALATWQDMYEARTLDKDNNPSPNERRVR DELVNNKADWQFALSARCLQLAVKDLSNAWKNFFDKAQPDWGKPHFKSKKAPRQGFKTDR AKVINGKLRLDKPRGIKSWFDIPTYEALKMEEVKIASIFRERGHYYAALFYEEEAGLKAK TGKKTAIDVNVGHFNYTKGKINVLPAKLQKLYKRIKHYQRILAKKRRANGKLAGRSNNYL QVRTKLQRDYRKVADIQNDLLQKFTTELVNNYDQIVIENLNVKQMMMTHVASKGMQRSLF GKFKQILTYKCEWYGKKLILADKTYPSTQRCANCGYVKTGADKITLQGNRKHGTKHNEYV CYECGYSNDRDDNAVLNLLALTK >gi|256541413|gb|ACPV01000061.1| GENE 5 5404 - 5682 279 92 aa, chain - ## HITS:1 COG:no KEGG:LBA1450 NR:ns ## KEGG: LBA1450 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 88 1 88 91 132 73.0 5e-30 MLYPYAEFPGELSITYSQIMVDDNVKGGKKLLVHFEQPTDYGFKEARYELPDYKEIYNYD FTPSETRNNLDILKRNESLIWKCAEEEEIMID >gi|256541413|gb|ACPV01000061.1| GENE 6 5692 - 5886 220 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227877709|ref|ZP_03995745.1| ## NR: gi|227877709|ref|ZP_03995745.1| hypothetical protein HMPREF0506_0746 [Lactobacillus crispatus JV-V01] # 1 64 9 72 72 116 96.0 4e-25 MPNKEILYFNDHIVPWIEKEEWANNEHTEVALTFKKNTPVDIINKFLICRSELAINYTAD YKIV >gi|256541413|gb|ACPV01000061.1| GENE 7 5934 - 6269 418 111 aa, chain - ## HITS:1 COG:DRB0141 KEGG:ns NR:ns ## COG: DRB0141 COG4226 # Protein_GI_number: 10957478 # Func_class: S Function unknown # Function: Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters # Organism: Deinococcus radiodurans # 5 110 4 109 168 94 41.0 4e-20 MKKELSYKGYYGSVEYSLEDDVLYGKVIGIKGLLSYEGQTLDELRKDFQGVIDEYLEDCK AQGIVPQKSYKGSFNVRITPELHMKAAAYAASQAESLNSLVEKAIKKYVNA >gi|256541413|gb|ACPV01000061.1| GENE 8 6269 - 6514 126 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843567|ref|ZP_05549055.1| ## NR: gi|256843567|ref|ZP_05549055.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 81 1 81 81 135 100.0 1e-30 MVNHKKTIEKIKAESVNITYIEAESLLEWLGYTKLNKGKTSGSRVKFIKGNKPIYLHKPH PRKNLLKYQVKDLKSNLRGEI >gi|256541413|gb|ACPV01000061.1| GENE 9 6917 - 7906 1087 329 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01449 NR:ns ## KEGG: LCRIS_01449 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 329 1 329 329 453 99.0 1e-126 MKSKLTVLVAISAALTLAGCSQSTQGNSNSQSQSEKSSQVSKSNSEKTGTSESSNSQNSA KLSAENMDYKTQVSAISVYAAQKYGDTWEIAVNAAKNGNLGVAFRTKAATGITSDDSGYV YEVSGTGKSSNARYMLNGDGAQKKITIFVKQRNLGTVTLQDVVDYINKNNDVDLVQSLAK NAKLDVKLEGDNDNAAGAKESASAVIPSSLQGTWYTADTGNGNIDTLTVTANKINDEAGF SMDVKAKNSGSSTSSGYMKQATINGINFYSFTNMGQKPGQGSTYLAPHTENGQSVIVSAN SKGTTNAVYWKSEALAKQNSNKQFSDLQY >gi|256541413|gb|ACPV01000061.1| GENE 10 8051 - 8923 768 290 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01450 NR:ns ## KEGG: LCRIS_01450 # Name: not_defined # Def: ABC transporter # Organism: L.crispatus # Pathway: not_defined # 1 290 15 304 304 513 99.0 1e-144 MINLTACQSQKQTNNRQTIEKSGVTQKQTPKRLIVKSMSDTEKSSAISIYGSMKYGDAWK TAYSDAKKNHLSISVKNRTGFNWIKKGRGYIYEVTGNGQENNAFYTMKSETVYFYNQKKN LGVASLSEIASYLNEHNQVKAVEKLATKTTLAAEVTSDKYGVKGDDGLALVPTRLWGTWY NYKGKKLVITDHTVNGEEIHHISNSGVAAESLDQTKKWARARIENINGLNCYHVQTLNAQ DFGLLYSVQKDNGNTAVVTYSVDTGHYTATYWKSTKIAKEHRNAEFKTLN >gi|256541413|gb|ACPV01000061.1| GENE 11 9255 - 10592 1779 445 aa, chain - ## HITS:1 COG:SPy1877 KEGG:ns NR:ns ## COG: SPy1877 COG0174 # Protein_GI_number: 15675696 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Streptococcus pyogenes M1 GAS # 6 444 4 446 448 525 57.0 1e-149 MSKQYTAEEIKQEVEDKDVRFLRLAFTDINGTEKAVEVPKSQLDKVLTNDIRFDGSSIDG FVRLEESDMVLYPDFSTWTVLPWGDEHGGKIGRLICSVHTTDGKPFAGDPRNNLKRVLGE MNEAGFDTFDIGFEMEFHLFKLDEDGNWTTEVPDHASYFDMTSDDEGARCRREIVETLEG MGFEVEAAHHEVGDGQQEIDFRFDDALTTADRCQTFKMVTRAIARKHGLFASFMAKPVQG QAGNGMHNNMSLFKNGKNVFYDKDGEFHLSNTALYFLNGILEHARAITAIGNPTVNSYKR LIPGFEAPVYIAWAAKNRSPLVRIPSAGEINTRLEMRSADPTANPYLLLAACLTAGLNGI KEQKMPMKPVEENIFEMTEEERAEHGIKPLPTTLHNAIKAFKKDDLIKSSLGDHLMHSFI ESKELEWSKYSQSVSDWERQRYMNW >gi|256541413|gb|ACPV01000061.1| GENE 12 10728 - 11978 1490 416 aa, chain - ## HITS:1 COG:SA1148 KEGG:ns NR:ns ## COG: SA1148 COG4100 # Protein_GI_number: 15926890 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Staphylococcus aureus N315 # 6 408 2 403 412 405 49.0 1e-113 MNNLPEKLQKIVKEVDQQIAPKLAEIEDQIVYNTAKVLAAYQANDVAEADLNGANGYGDD DMGRDKLDKIYAQVFQTEDAVVRPQFVSGTHTLFVALAGNLKYGDTLTYLTGQPYDTLQK VIGLTDDKRGTLVERGVHFSYVPLTDDGLVDYDAAEKVLKRDQPKIVAIQRSRGYSTRKT FTVDQIKDMISFIKRVSPKSIVFIDNCYGEFSEKHEPTEYGADLMAGSLIKNAGGGLAKT GGYIVGKKDLVENAKLALTAPGCTDEGATIGNLHDFYEGFFLAPNVTGMAEKGMIFAAAL FAKMGLNVTPAWDEKRSDIIETIIFGDPDKMVKFVQEVQKNSPIDSFVTPEAVHMEGYED KIIMAAGNFVSGSTIEFSADGPIRPPYAVYMQGGLTYAHDKVAIINAVRDTFFNKK >gi|256541413|gb|ACPV01000061.1| GENE 13 11971 - 12891 721 306 aa, chain - ## HITS:1 COG:BH2366 KEGG:ns NR:ns ## COG: BH2366 COG0324 # Protein_GI_number: 15614929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Bacillus halodurans # 2 298 3 300 314 263 48.0 3e-70 MKKVLAIVGPTAIGKTDLAIDLAKRLNGEIISGDSMQVYQEVAVGTAKATAEEQAQVKHY LVDTQSVFDEYSVKDFVDQATKAIEEISQKGKLPIIAGGTGFYVNALLNKMQLGEKTPEE RSVSQKWENYLKEKGAEKLWQVLNEQDPKAAEKIPVANSRRTMRALTVIERTGKKFSEQQ KQIEPRYDYLIIGLNSDRQEIYRRINLRVDKMMEQGMLDEAKFIYQNRAREYQVLQAIAY KEFFPYFEGQETLEHCIEDLKTASRRYAKRQLTYFRNKLPVVWFDPLDDPGCEQKILKKV KEGKNE >gi|256541413|gb|ACPV01000061.1| GENE 14 12969 - 13370 463 133 aa, chain - ## HITS:1 COG:lin1388 KEGG:ns NR:ns ## COG: lin1388 COG0607 # Protein_GI_number: 16800456 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Listeria innocua # 37 129 32 124 126 95 51.0 2e-20 MSSFLIVLDLVLLVIILVMVGIWAWNKIQAKSIGGELTNEEFKEGMRKAQIIDLREKEPF KRKHIDGARNLPYTMLKYQYTELRSDLPVYLYSDSKTITLRAARFLKKKGFVSIHWLKDG FEAWDGRTKKSKY >gi|256541413|gb|ACPV01000061.1| GENE 15 13428 - 13667 245 79 aa, chain - ## HITS:1 COG:SPy1530 KEGG:ns NR:ns ## COG: SPy1530 COG4483 # Protein_GI_number: 15675429 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 66 1 66 67 72 57.0 2e-13 MKTLYDVQQLLEKYGILVHVGKRIWDIELMALELDNINRAGLIDQHDYLIAKMILSREHR IEVKNEQKKALKDPKNDSQ >gi|256541413|gb|ACPV01000061.1| GENE 16 13667 - 14353 631 228 aa, chain - ## HITS:1 COG:BH1421_1 KEGG:ns NR:ns ## COG: BH1421_1 COG0705 # Protein_GI_number: 15613984 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Bacillus halodurans # 4 179 178 349 349 110 35.0 2e-24 MNTQRKINLSQSFVTLGILVVLLIIFLVEVFLGGSENTNVLMKMGAMNNFAVVAGHQWWR LFTAQFLHIGIMHLVSNAIIIYYMGQYMEPLMGHVRFLVTYLLAGVGGNLMSLAFSADRG LSAGASTALFGLFGAMTAIGLRNLHNPMIAFLGRQAFVLALINLALDIFVPGIDIWGHIG GLIAGFLLAIILGDRVMKTYNPKWRVLAAAVLVVYVVWTVRTGMIINF >gi|256541413|gb|ACPV01000061.1| GENE 17 14387 - 14950 543 187 aa, chain - ## HITS:1 COG:BH1417 KEGG:ns NR:ns ## COG: BH1417 COG0212 # Protein_GI_number: 15613980 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Bacillus halodurans # 1 187 1 185 186 92 32.0 5e-19 MEKSELRKEQISKLKEFANTKEKRAEDAILLEKLMSTDLIRRSQTIGVTASLPLEVDTSE LIARLWDKGKEVYLAKARGDQNHTLDFLRYTYMSKLVKSKFGVEEVADEDAKINNDLDLV IVPGLAFALDSHVRLGFGGGYYDRFLAKHDPKTVALANSKMTFDTSIWPIEKTDIPVQTI VTPDKIY >gi|256541413|gb|ACPV01000061.1| GENE 18 15005 - 15154 263 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|58337773|ref|YP_194358.1| 50S ribosomal protein L33 [Lactobacillus acidophilus NCFM] # 1 49 1 49 49 105 100 2e-22 MADNIILECTECGDRSYLSKKNKRKHPERLSLKKYCPVERRATLHRETK >gi|256541413|gb|ACPV01000061.1| GENE 19 15230 - 17275 2320 681 aa, chain - ## HITS:1 COG:lin1477 KEGG:ns NR:ns ## COG: lin1477 COG0768 # Protein_GI_number: 16800545 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 13 681 36 691 721 402 37.0 1e-111 MRIILGVILVLFAMLIGQLAYLQLVYGSRFKAEVQKTDSTVVSHQVPRGVMYDAKGRVLV GNKATNAITYTKSASTTTADIYKISNALSNYIKISDEKPTKQMAADYYLANEDNNTKISN ALPKSAKIDADGNKKTSAEIYQAELAYVEKMNPQLTTRQKTAALIFNKISGAYTLSTIYI KNKGLTDREIAQVGEHLSELPGVGIGTDWQRSYPNGSSIQSIIGSVSTEKSGLPSDSLQY YLRNGYSRNDRVGTSYLEKEYEPLLKGTKSTNQVITKSNGNIQQTKTVYNGQAGASLMLT IDAKYQKQVQATLKRVYSTAVGNGAARYSNGAYAVAMNPQTGALLAVAGINRNTNTGKTT DNALGVINQSFVMGSVVKGATVGGGLINKVITPENNTLPDTAIYLPGSPVKKSVYPVGTF SSLDAETALEVSSNIYMMHLAMKWVKASYVPKSYIHMPNDAFDILRRNFAMFGLGQKTGV DLPGEVSGIEGKSFNDKGNILSGSVLDLAYGNYDAYTPIQLAQYVSTIANGGKRLQPYIV QSVGKTSKNGKKIYISYNKKPNVQQVIPWTLAELNVVQTGFYRVVHGTNGWGTAHPLKNV KPSISGKTGTAQTFYYDAEHPNRKHNIELINATFIGYAPSKNPKLAVAVVFPGLDPDGEG TYTLQVAKAMVQDYFKLHSTK >gi|256541413|gb|ACPV01000061.1| GENE 20 17426 - 20065 1471 879 aa, chain + ## HITS:1 COG:SPy2211 KEGG:ns NR:ns ## COG: SPy2211 COG4485 # Protein_GI_number: 15675943 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 7 863 4 849 858 173 24.0 2e-42 MMLKFLNSRHIAINRKNIFFWLSFLLPALIFLSYFFYSKNGVLTVDLGQQYVDFLAFFRR NLFSHPLRLIYSFSNGLGGSMLATDAYYLCSPFNLLLFLFPQHFLPQAILIIIALKIGAA GLSSYYYWKQKITNHFYALAASSAYALSGYVIGNHYNLMWLDSVILLPLLINAIDRLLAQ RKNKLILITFLLWFTNFYTGFMALAFGLLYLLSKIFFINKQERLRLNWIYLRKSIAGSFL DAFMLFPVLIEMLQGKASSTASWNLGWQFSPVEQLTKLAEGAYNFHEMQEGMPNIYLTMP FLLLTILYFLSKKINWQRKLANGILLIFLIASLFWTPLVLLWHLGQFPVWYPGRFSFVLI FFALNLGVIALEQKERIAYWQTGLLTLFSLGLIVYIVFNASHFDFLTEDAQIATGAFLAL GILFIGFIYHQHSFAAPFFYLVIELELIVNLVLSLGNLAYQKNSDYQNFTTNVSQAVQYA NQHDSGFYRTEKTFYRSDDDPFSAGYYGLSNFNSISDQKVLNLINNLGFLNNSNSYTNFG GTTLTDDLLGIKYYLLPNDEITTIKSGKQMKYDNSNHRVDASDYHLQKRFSQLYLVKNNA ALPLLFLTSQKTQKINFNSLDITSNQTKFFQAVTGAKVQLFKQINWPKAKLINVTSMKND QLQYNRKNNKQIARIIFNFKPQTDDSYYIEMPGEIDDNAISMTVNGANINLAVRDQNARL INLGSHQRGQRLQVTFELKKDKLDLSGIHFWRLNTQKLEQIIHRFKQKQPNFKQTSALII KSNHFTTKKMMTLASTIPNNINWLVLDNGKIINKNKTLFMNAFLNFKLNPGKHQITLIYV PWVLLLGMLVSLISLTILLICKKKATVSANSKTFTRPTV Prediction of potential genes in microbial genomes Time: Wed May 25 05:28:40 2011 Seq name: gi|256541412|gb|ACPV01000062.1| Lactobacillus crispatus 125-2-CHN cont1.62, whole genome shotgun sequence Length of sequence - 11883 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 9, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 55 - 978 1353 ## COG2971 Predicted N-acetylglucosamine kinase + Term 1006 - 1054 10.2 + Prom 1097 - 1156 5.1 2 2 Op 1 . + CDS 1246 - 1494 183 ## LCRIS_01462 addiction module antitoxin, RelB/DinJ family 3 2 Op 2 . + CDS 1497 - 1790 295 ## LCRIS_01463 putative protein without homology + Term 1828 - 1878 9.9 + Prom 2450 - 2509 7.6 4 3 Tu 1 . + CDS 2538 - 2822 181 ## PROTEIN SUPPORTED gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 + Term 2843 - 2876 4.5 5 4 Op 1 35/0.000 - CDS 2867 - 3640 280 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 6 4 Op 2 33/0.000 - CDS 3633 - 4559 742 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 7 4 Op 3 . - CDS 4565 - 5446 883 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 8 4 Op 4 . - CDS 5443 - 6162 700 ## LCRIS_01468 putative protein without homology 9 4 Op 5 . - CDS 6162 - 6761 337 ## LCRIS_01469 putative protein without homology - Prom 6794 - 6853 3.6 - Term 6815 - 6858 -0.9 10 5 Tu 1 . - CDS 6877 - 7470 768 ## LCRIS_01470 putative protein without homology - Prom 7557 - 7616 11.5 + Prom 7577 - 7636 12.0 11 6 Tu 1 . + CDS 7666 - 8445 1001 ## LCRIS_01471 S-layer protein + Term 8474 - 8503 1.2 - Term 8407 - 8450 1.0 12 7 Tu 1 . - CDS 8530 - 9042 400 ## COG3344 Retron-type reverse transcriptase - Term 9135 - 9167 4.3 13 8 Tu 1 . - CDS 9182 - 9484 296 ## LCRIS_01474 hypothetical protein - Prom 9599 - 9658 6.7 14 9 Op 1 . - CDS 9666 - 10484 725 ## LCRIS_01475 hypothetical protein 15 9 Op 2 . - CDS 10481 - 11752 1025 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase - Prom 11794 - 11853 5.6 Predicted protein(s) >gi|256541412|gb|ACPV01000062.1| GENE 1 55 - 978 1353 307 aa, chain + ## HITS:1 COG:alr4655 KEGG:ns NR:ns ## COG: alr4655 COG2971 # Protein_GI_number: 17232147 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted N-acetylglucosamine kinase # Organism: Nostoc sp. PCC 7120 # 3 275 1 291 320 84 27.0 2e-16 MALKYQIGVDAGGTHSTAIAYDETGKEIGRAEGGPGQINADYEGGIKNISDTINELIDKV DGDCMRVLVGIAGLSVVGNAPEVAATISSRINNLPTRAITDSLLALYAGLEGDDGALVIA GTGSVYNGLQNGHLIAVGGYGNILGDEGSGYAIARSAMQSALLSWDKREDNALIQMFTKL FGVEHMDECNAKFYKMSNPEVAGMAVHVAQLADEGSDDAIKVIKKQAHLLARDIIIGLDR YEDPKPMKIALTGSVLANNEMLRGLVEDEVKNKYPDAIFSISNGENARAVLFDKSKDYRY FTNHEDR >gi|256541412|gb|ACPV01000062.1| GENE 2 1246 - 1494 183 82 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01462 NR:ns ## KEGG: LCRIS_01462 # Name: not_defined # Def: addiction module antitoxin, RelB/DinJ family # Organism: L.crispatus # Pathway: not_defined # 1 82 1 82 82 149 100.0 3e-35 MAQISVKIDDKLKKEAQDILASYGVDISTGIRMYFKAIVRSNGIPLELRPMTELDEANYE ADNHIYHGSYSSFEEYKKAMRK >gi|256541412|gb|ACPV01000062.1| GENE 3 1497 - 1790 295 97 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01463 NR:ns ## KEGG: LCRIS_01463 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 97 1 97 97 170 98.0 1e-41 MQVNPTKRYYRAYKRYERKHYPMDYVDDCVEAILTNDKEFLAKHKDHPVGKNRKMHVNRQ YNDDWLLYYRIDKETHELILVLVALGTHDELDRFANM >gi|256541412|gb|ACPV01000062.1| GENE 4 2538 - 2822 181 94 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] # 1 94 1 94 96 74 34 4e-13 METISKKQLVDQIAAKTDATKTDINTILDAYIDVVKSNVAEGNKVQLVGFGAFELRHRAA RKGRNPQTGKEIEIAASNVPAFKPGKSFKDEVNK >gi|256541412|gb|ACPV01000062.1| GENE 5 2867 - 3640 280 257 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 224 1 226 245 112 29 1e-24 MLKASQIDFSYGSKQLFNQFSLSLQEHQITTLIGPNGSGKSTLFRLLTRAIRPSAGTITL DGQDIWQLAAKDFAKKVAIVHQQNQLYDQITVKELVKMGRLPYHSLMGDEENGSARLQQI MQELEIADLADKFIAQLSGGQQQRVWLATALAQEPEYLFLDEPTTYLDLHFQYRFLDLVK KLNRKQNLTICMILHDLNQALQYSNQAILLNQGRIQKQGGPEEVITAQTIRQNFGIDCEM IETEQGKVLLMAGSEAK >gi|256541412|gb|ACPV01000062.1| GENE 6 3633 - 4559 742 308 aa, chain - ## HITS:1 COG:BH3296 KEGG:ns NR:ns ## COG: BH3296 COG0609 # Protein_GI_number: 15615858 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Bacillus halodurans # 1 306 1 323 328 186 39.0 6e-47 MKKKVIWINLILAVLLISTIFFALTHGASNFSMQKMTNSQLNILFNIRVPRIISALVAGS SLSVSGAFFQATLRNPIAEPGIMGISSAASLCQLLAVIILPEIFFGKIIFAIIGGLLAFG LLLLFQKKMTPYQLIIIGVALNAVFTGMQEVFTNSQNSGSSLATSSWGSTMYLLIIGVVG LIFAICFMNWANYLKVNDEELTSLGVSAKTLRLVLMLIAVVLAATTTACIGVLAFIGIIV PQVARLLLGYDYQKIIPFSIFAGAWFLLFVDTIGRVITAPNEIAANIILAIVGGPVMILI LWKRQKNA >gi|256541412|gb|ACPV01000062.1| GENE 7 4565 - 5446 883 293 aa, chain - ## HITS:1 COG:BH3297 KEGG:ns NR:ns ## COG: BH3297 COG0614 # Protein_GI_number: 15615859 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus halodurans # 29 291 40 302 302 213 39.0 4e-55 MKKRKGLIIGLIIFLVAIVGVAIGAKRLIDQKVANNEKIVATSAAITEIFDKLNVNLAGV PKTQAKLPARYQKVPKIGSPMKPSVEKIASLNPTRVYAVSTLKDQYDQSFKEQGVKVTYL KLDSVADLEATLSSLGKQYYRQRQADYQIGLIKKAVKKAKARVHGRKPRVLILMGLPGAN YMILTNRSYLGDLVRIAGGENIYHSDSQIYLSPSNDSLATKNPDVILRLEHALPNVTLPQ FKQEFKKNSVWKTMKAVKTGRVYDLQQPDFNASANMNVSQALNKLSNWLYPGK >gi|256541412|gb|ACPV01000062.1| GENE 8 5443 - 6162 700 239 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01468 NR:ns ## KEGG: LCRIS_01468 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 239 1 239 239 419 98.0 1e-116 MKNIAKIISFPFLLLTCLFIFGVTVSAQSVSYRTYKYGTHQTSMADGYYARPAQVVVDDN QYLVTMTIRTKKDLSPYPVQVLTIDGQAPLNVVKTRHGSDYDYRYSFRTNNLKRDISSQI KIDVPHVYQATHNITFAFNTTQLPKLTNKKERASHAESAIKRSAPQVKNKSVKPKEQLAQ KKQAAIANRQIAQNARNQRANQQRQRNFYYVILAGVLSSLILIGVAVLIVVNAKERKSK >gi|256541412|gb|ACPV01000062.1| GENE 9 6162 - 6761 337 199 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01469 NR:ns ## KEGG: LCRIS_01469 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 199 1 199 199 310 97.0 2e-83 MTLKVEVKHGMVTKFQPVSLGIGSISNLRFTKQAGKDIWTYQVHFKSLNQLKKQAQGSLR LSVPIANIHDRLFKVWFAFGVKNVAHSSTVSKALTEANSSTDSSSTSDAITAANDDSSKD AKNATSSAQPQSKPVKKQQASSNSSVKPSAKTTPKKKKMATIAAVEYPFLPVIAGFLAFD AAIIGLAFYLRNKILKRKK >gi|256541412|gb|ACPV01000062.1| GENE 10 6877 - 7470 768 197 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01470 NR:ns ## KEGG: LCRIS_01470 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 196 1 196 197 269 100.0 4e-71 MNKKLLKLIASSSVAMTLMAPGVAFMQTNPVVMAAEQSQKTVGMTVYKYSKNHRSHAKSM AQGFVGDKVQLTVSQKHVTKMTIHVDGKNSPMGKGQNVNKIVKSLKINGVSGKKENVSAD KSSFDFVFAGKAFKNNGWVKMQVTIDFGGKMTEQAWVKYDKVSGLTTSKKKTDKKQKKAS KKSVKKVSKKSTHGQRG >gi|256541412|gb|ACPV01000062.1| GENE 11 7666 - 8445 1001 259 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01471 NR:ns ## KEGG: LCRIS_01471 # Name: not_defined # Def: S-layer protein # Organism: L.crispatus # Pathway: not_defined # 1 259 1 259 259 354 99.0 2e-96 MKKNTKIILTSLALLASASVLAPSAVVSAADQPATNVAATTATSQNSDLQTITMTITKTG STTPSEAAMFLGNSAQVNVKDGKVTEVIIHVDGSKAPMTKGQDMSKMVASLTLNGVAGKQ ENVAKDGSSLDYVFSADAYKEGAGSLEFGLNVMGKTMNEKADITLGKVAEDTANKDANTT SDKTQTDAAAAKKTAAKKAKAVKRTLKHNAYVYKKNGKRANKKVLKKGHRVNTYGRAIKL HGKTFYRISKNTYVKKANF >gi|256541412|gb|ACPV01000062.1| GENE 12 8530 - 9042 400 170 aa, chain - ## HITS:1 COG:BH0039 KEGG:ns NR:ns ## COG: BH0039 COG3344 # Protein_GI_number: 15612602 # Func_class: L Replication, recombination and repair # Function: Retron-type reverse transcriptase # Organism: Bacillus halodurans # 1 119 205 320 418 95 42.0 3e-20 MDKELEQRGLRFVRYVDDCNIFVKSGKSAKRVMKSITSWLERKLFLKVNTTKTKVVRPTK SNFLGFTFWKTGENWQAKPGDDRKAKLYDKIRELLSRHKAVAQPLSLVFTKINQVVKGWG AGVFGFNAKEVAKMWQEAFDTPTSISTVIYAVIPGRKNKDVVADFKDIFA >gi|256541412|gb|ACPV01000062.1| GENE 13 9182 - 9484 296 100 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01474 NR:ns ## KEGG: LCRIS_01474 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 100 64 163 163 168 99.0 4e-41 MLMKRVPWKIVRGFPILGWVSIVSLVFCLLSPYCVRVINAVDFLSLTTSVLAFAGISVTH RLKDLSKISWKILIVALFVFFGMYFMDTLISQIALNLSGK >gi|256541412|gb|ACPV01000062.1| GENE 14 9666 - 10484 725 272 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01475 NR:ns ## KEGG: LCRIS_01475 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 272 1 272 272 422 98.0 1e-117 MKSLKNYGPLIILVLLIDTIAEFIGMQVFKIGKIEVSILPLVFAVILAIIIYLLPLKPIK QLYNDKRVKFAGKYMILIMLPLMARYGANVAPKINEILSVGWVFLIHELGNLGTILFGLP VALLLGLRQEAIGSTLGLGREGELAYISEKYTLDSPEGRGVLGIYLIGTIFGSIVFSILA PVLLGMGFSYQAVAMSSGVGSSSMMTAASSALAALVPKHSETILSFAAASQLLTSFIGTY IMYFLAVPLQRFMYVHLTSLLDKKKEVYPDHD >gi|256541412|gb|ACPV01000062.1| GENE 15 10481 - 11752 1025 423 aa, chain - ## HITS:1 COG:FN1186 KEGG:ns NR:ns ## COG: FN1186 COG1473 # Protein_GI_number: 19704521 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Fusobacterium nucleatum # 53 357 29 295 359 94 29.0 3e-19 MSSFQEYYSELQELAGYLLHNPELGYKEYKTSKAVEAEIAKISTNIKIEHYCKTGLKVMF DNHCPKTIGIIAELDSLYQPGHKDADPETGAAQACGHYTQVTTALALINELMKNDRLNEF GTNLAFIFTPAEEFVDLNWRKKHKLAGDFTYFGGKQEAIKLGVFDDIDYCVSVHAIGEDF ERRTIEINCDLAGFNFQYFDFFGKASHAAFAPEEGVNAQSIATLFTTALAFKRQQLKNPN QIRFNPVMIGDNTESINVIPDHVSMGTDIRYFDVEYAQQLMKQFNQAAEGCSLALGGNFK SETQVGYLPLRSNRDMNALVKNVFLRNDKISELIENRGYTMAAGDIGDVSYLMPTIQIGY GGWNGTIHGSDFKLVDPVFVLDIFPEFIFNSVLEISNNLNKIRTYRRTNQEYLEQLNKMG AEK Prediction of potential genes in microbial genomes Time: Wed May 25 05:29:18 2011 Seq name: gi|256541411|gb|ACPV01000063.1| Lactobacillus crispatus 125-2-CHN cont1.63, whole genome shotgun sequence Length of sequence - 45292 bp Number of predicted genes - 51, with homology - 50 Number of transcription units - 23, operones - 11 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 25 - 69 10.1 1 1 Op 1 . - CDS 91 - 1296 1275 ## COG1228 Imidazolonepropionase and related amidohydrolases 2 1 Op 2 . - CDS 1307 - 2938 1567 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 2975 - 3034 9.0 - Term 3100 - 3127 -0.8 3 2 Tu 1 . - CDS 3335 - 4150 822 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 4227 - 4286 5.3 + Prom 4166 - 4225 6.1 4 3 Op 1 . + CDS 4378 - 5931 1499 ## COG2132 Putative multicopper oxidases 5 3 Op 2 . + CDS 5944 - 6120 188 ## LCRIS_01481 membrane protein 6 4 Tu 1 . + CDS 6492 - 7343 610 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Term 7352 - 7400 4.2 - Term 7329 - 7396 14.2 7 5 Op 1 . - CDS 7410 - 8321 1171 ## COG0039 Malate/lactate dehydrogenases - Term 8330 - 8379 6.1 8 5 Op 2 . - CDS 8383 - 8859 748 ## COG0782 Transcription elongation factor 9 5 Op 3 40/0.000 - CDS 8938 - 11358 3091 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 10 5 Op 4 . - CDS 11362 - 12411 1259 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit - Prom 12612 - 12671 3.3 - Term 12450 - 12498 1.8 11 6 Op 1 16/0.000 - CDS 12695 - 13561 846 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 12 6 Op 2 34/0.000 - CDS 13571 - 14311 237 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 13 6 Op 3 17/0.000 - CDS 14321 - 14992 591 ## COG0765 ABC-type amino acid transport system, permease component 14 6 Op 4 . - CDS 14973 - 15386 370 ## COG0765 ABC-type amino acid transport system, permease component - Prom 15489 - 15548 4.6 15 7 Tu 1 . + CDS 15791 - 16015 73 ## - Term 15679 - 15733 6.2 16 8 Tu 1 . - CDS 15935 - 16285 400 ## COG1733 Predicted transcriptional regulators - Prom 16320 - 16379 3.9 - Term 16299 - 16347 -0.8 17 9 Tu 1 . - CDS 16393 - 17160 815 ## COG0566 rRNA methylases - Prom 17231 - 17290 5.8 + Prom 17173 - 17232 10.1 18 10 Op 1 2/0.167 + CDS 17260 - 17532 367 ## COG1254 Acylphosphatases 19 10 Op 2 . + CDS 17576 - 18541 1016 ## COG0706 Preprotein translocase subunit YidC + Term 18548 - 18579 1.0 20 10 Op 3 . + CDS 18588 - 19076 531 ## COG3760 Uncharacterized conserved protein + Term 19145 - 19199 3.8 - Term 19237 - 19272 3.5 21 11 Op 1 . - CDS 19284 - 20465 1418 ## LCRIS_01496 S-layer protein 22 11 Op 2 . - CDS 20534 - 21352 600 ## LJ1642 hypothetical protein 23 11 Op 3 . - CDS 21412 - 21693 128 ## LCRIS_01498 putative protein without homology - Prom 21723 - 21782 12.5 - Term 21808 - 21859 5.3 24 12 Op 1 40/0.000 - CDS 21866 - 23434 1602 ## COG0642 Signal transduction histidine kinase 25 12 Op 2 1/0.167 - CDS 23421 - 24137 871 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 24181 - 24240 8.1 - Term 24238 - 24281 7.6 26 13 Op 1 . - CDS 24306 - 24869 594 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein 27 13 Op 2 . - CDS 24872 - 26023 1031 ## COG1323 Predicted nucleotidyltransferase 28 13 Op 3 6/0.000 - CDS 26027 - 26374 397 ## COG0799 Uncharacterized homolog of plant Iojap protein 29 13 Op 4 9/0.000 - CDS 26392 - 26985 566 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 30 13 Op 5 1/0.167 - CDS 26966 - 27619 698 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 31 13 Op 6 6/0.000 - CDS 27630 - 28739 1018 ## COG1161 Predicted GTPases 32 13 Op 7 . - CDS 28732 - 29256 371 ## COG2179 Predicted hydrolase of the HAD superfamily - Prom 29362 - 29421 3.1 33 14 Tu 1 . - CDS 29448 - 30599 817 ## COG0675 Transposase and inactivated derivatives - Prom 30827 - 30886 5.2 + Prom 30697 - 30756 5.1 34 15 Tu 1 . + CDS 30818 - 31882 512 ## COG1816 Adenosine deaminase + Term 31884 - 31939 12.2 - Term 31876 - 31921 10.0 35 16 Op 1 46/0.000 - CDS 31930 - 32286 595 ## PROTEIN SUPPORTED gi|227877776|ref|ZP_03995809.1| 50S ribosomal protein L20 36 16 Op 2 36/0.000 - CDS 32331 - 32531 347 ## PROTEIN SUPPORTED gi|227877777|ref|ZP_03995810.1| 50S ribosomal protein L35 37 16 Op 3 . - CDS 32553 - 33068 390 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 - Prom 33132 - 33191 7.2 - Term 33113 - 33150 4.5 38 17 Tu 1 . - CDS 33294 - 34211 824 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 34365 - 34424 10.4 + Prom 34277 - 34336 8.9 39 18 Op 1 . + CDS 34406 - 35059 377 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 40 18 Op 2 . + CDS 35022 - 35228 106 ## Ldb2178 spermidine/putrescine ABC transporter permease 41 18 Op 3 8/0.000 + CDS 35221 - 36018 481 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 42 18 Op 4 13/0.000 + CDS 36020 - 37060 674 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 43 18 Op 5 . + CDS 37085 - 38146 1268 ## COG0687 Spermidine/putrescine-binding periplasmic protein + Term 38164 - 38206 10.5 44 19 Tu 1 . + CDS 38215 - 39918 1577 ## COG1001 Adenine deaminase 45 20 Tu 1 . + CDS 40806 - 41102 180 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase + Term 41341 - 41373 -0.9 46 21 Op 1 . - CDS 41795 - 42559 477 ## LCRIS_01519 ABC-type polysaccharide/polyol phosphate export system, permease component 47 21 Op 2 . - CDS 42556 - 43482 367 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 48 21 Op 3 . - CDS 43519 - 43956 318 ## LCRIS_01521 hypothetical protein 49 21 Op 4 . - CDS 43953 - 44393 289 ## COG3279 Response regulator of the LytR/AlgR family - Prom 44430 - 44489 4.7 - Term 44486 - 44529 6.3 50 22 Tu 1 . - CDS 44553 - 44780 263 ## gi|256843641|ref|ZP_05549129.1| predicted protein - Prom 44801 - 44860 7.5 - Term 44936 - 44983 7.5 51 23 Tu 1 . - CDS 45039 - 45158 75 ## gi|227877796|ref|ZP_03995827.1| hypothetical protein HMPREF0506_0828 - Prom 45222 - 45281 4.3 Predicted protein(s) >gi|256541411|gb|ACPV01000063.1| GENE 1 91 - 1296 1275 401 aa, chain - ## HITS:1 COG:BH2935 KEGG:ns NR:ns ## COG: BH2935 COG1228 # Protein_GI_number: 15615497 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Imidazolonepropionase and related amidohydrolases # Organism: Bacillus halodurans # 8 401 7 389 394 185 30.0 1e-46 MTKTAFVNCNLFVGNEDNLVDNAWFVVDDETGKLTDQGKGKCTADFDKQVDLKGKYVMSG LLNSHTHMGLDSDLKKKFPTTEASTTYAALRDLREALQTGVTYVRSCGTSFDVDCKLVQM RKQYPFEGPQVMPTGMAMSIVGGHGDFKVGLNGEQNASHLVNGPEDMRRAVREQFAKGAK NVKLMATGGIMSLGDEVDDTELSLEEMKMAVEEAHSKHMTVCAHAEGRRGIHYAVVAGVD SVEHGFYLDDNDLALMKKQGTFLSPTLTAGRTIVVHGKDVVPEFSYRKMCAVVDDFYNHV GHAIKEGVRLAMGTDAGTYFNRFSDTPNELVELVRAGATNYQALRAGGLGSAELLKVDQE YGSLEVGKYADFLVLRDNPLEDVAAVGQKDKQVYQHGLRKF >gi|256541411|gb|ACPV01000063.1| GENE 2 1307 - 2938 1567 543 aa, chain - ## HITS:1 COG:SA0849 KEGG:ns NR:ns ## COG: SA0849 COG4166 # Protein_GI_number: 15926579 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 9 536 5 534 551 266 33.0 1e-70 MRKTLKHLFGTTVVALLGVSTLSACSSSQSGAKAPKQELTWMTTSEIQTMDPSKMVDTTG SEQASNVFEGLNRLNKAGKVVSGVATKTNQSKDGLTWTFTLRKNAKWSNGDPVTAEDFVY SLRRTLDPKTQSQQQNEWSNVVNADDVLAGKKAPSTLGVEAKGKYELVVHLKHPVPYFKA LSVGWNPQNKHVVEKFGKKYGTASKYMVYNGPFVQKGWTGSSLNWKLEKNDQYWDKDKVK LQTVNYSVQKTPSTDYNLYQANKLDGAYLDVQASKRLKGQSGYTVYKLDRTEYLTFNVSK HPELANVDFRRAVSMALNRTQLAKTVGGANTVARTFAGPNEYVDGKNFDQYVESKNPANK YMNYNPAGAKKLYDRALKELGKNKLTFTLMGDDDDVSKKVLEFVQSQLEDTFGKKVDVTV RSMPKTTRVKKMLNGDFEAVFTGLTSGYLDPNSQLHTMMTGQSYNFGKWSNKDFDKYMNN SDKELNPTKRLEDLYNAERVLTDQQGLTPLFHDGQAWMVRPSVKNVEFLGGNFSFKDASV SNN >gi|256541411|gb|ACPV01000063.1| GENE 3 3335 - 4150 822 271 aa, chain - ## HITS:1 COG:CAC0629 KEGG:ns NR:ns ## COG: CAC0629 COG0561 # Protein_GI_number: 15893917 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Clostridium acetobutylicum # 1 270 1 267 268 131 35.0 1e-30 MYKIIACDLDETLLSADTHVSVENREAIQKAVAHGVKFVPATGRGYVSVQNTLKEIGLEQ AANEYVISFNGASITENKNNRVLYFDGLPNEIADRLYRHGVELDIAMHVYTQDMVYTYHI DDDERAYMTGRHQFKEIEDKDLSFLEGQKIAKVLYESLDNNYLHRIAAELGPITQELDIS YSSNRYLEFNRKGVNKGAGLMKLAEQLRVPIEETIAIGDNFNDLSMIQAAGVGVGVANVN PAMKEQCDYITQADNNHGAVAEAIDHFIFNN >gi|256541411|gb|ACPV01000063.1| GENE 4 4378 - 5931 1499 517 aa, chain + ## HITS:1 COG:Cgl0921 KEGG:ns NR:ns ## COG: Cgl0921 COG2132 # Protein_GI_number: 19552171 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Corynebacterium glutamicum # 31 465 40 489 513 259 36.0 7e-69 MTDKIYTNYFIEDEDFDKNHFHYKKLSIPQGVEAQPLAVPPVLAPDKETDTDVWFTLESI ESESQILPGAKTKTWGYNAPLLGKTMVLKRGQRVHVTLKNSLPELTTYHWHGMEVPGPIT DGGCHAPVYPGEEKQIEFTVNQPAALTWLHAHPCPSTAAQVWMGLAMGVVVTDENEAKLP IPKNYGVDEFPVILQDRTFHKDNQLDYRADYDAMGVFGETPLINGTVRPYVDVTTQKIRL LFLGGSNRREWRLHFDDDLVMTQIAGDDSFLPHPIKMTKILVTPGERLQVVVDFKDYHDG DVVNLYTDDFKLIEFRIHKFAPDNSVIPDTLFKPEIPEIAEDLPVRKVTMDDHNKINGKQ FAMQRIDMKQQVSHAEYWDVTNTNSKEHGMLHPFHIHGTHFTVVSRDGEKPFPNEYGYKD TIPVRPGETVRLRVEFPQTGVFMYHCHIIEHEDAGMMAQIEVFDPKHPKTYKLMDMKTLT DAFAKERGIKPEDVWMPGMDTEGCGMEVDSSSGASQK >gi|256541411|gb|ACPV01000063.1| GENE 5 5944 - 6120 188 58 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01481 NR:ns ## KEGG: LCRIS_01481 # Name: not_defined # Def: membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 58 1 58 58 81 100.0 1e-14 MCSGMNNLFWKIIWVIVYAITAYFTFTGKMMMAMYWMAGGMLAESVVSLIYYFVNRQK >gi|256541411|gb|ACPV01000063.1| GENE 6 6492 - 7343 610 283 aa, chain + ## HITS:1 COG:L117444 KEGG:ns NR:ns ## COG: L117444 COG1464 # Protein_GI_number: 15672300 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Lactococcus lactis # 5 282 4 285 286 258 53.0 8e-69 MRKRRQRNIIIGTIVSLLIIVAGYFSFFWTPKSNGQTKVSVGIVGASKGDIAIWKSVAQT VKQKYGIILTTKSFDGYDQPDKALKSGDVDLNAFQHYAFLNAWNKANHGGITAIGKTYIS PIRLYSKKYHSLNALPEGATIVVPSDPTNESRALFVLKNAGLIKLKKGKVLVSVADITAN PNHFKIKEVASEQTSCVIDDVDAAVVNNDFAGPAHLGDKQTIFVEPLNKDSEQWINIICA RTKDKNKKIYQEIVKAYKTKKTKQIYKKYYGNKQIAAWDVKLK >gi|256541411|gb|ACPV01000063.1| GENE 7 7410 - 8321 1171 303 aa, chain - ## HITS:1 COG:lin1775 KEGG:ns NR:ns ## COG: lin1775 COG0039 # Protein_GI_number: 16800843 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 2 296 3 297 302 237 40.0 3e-62 MRTVGIIGMGHVGATVAYTLFTHSMVDELILIDKNEAKVNAEYNDLHDTLARNDSYVNVR KQDWDGLEDADIIITAFGDIAASVKTGDRFGEFELNARNAKEVGADIKESGFHGVLINIS NPCDAITQILQETSGLKKNRVFGTGTFLDTARVQRIIGEKLGQDPRNVEGFVLGEHGSSQ FTAWSTVRVNNKIAFQLFGDEEQEKISEQSNKNSFIVAKGKGYTSYAIATCATRLVQAIF SDAHLYCPVSVYNPEYKTYIGYPAIIGRDGIEEEIELKLTSEEKEKLQAAADKIKEHLKQ LKK >gi|256541411|gb|ACPV01000063.1| GENE 8 8383 - 8859 748 158 aa, chain - ## HITS:1 COG:lin1531 KEGG:ns NR:ns ## COG: lin1531 COG0782 # Protein_GI_number: 16800599 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Listeria innocua # 3 158 4 159 160 158 57.0 4e-39 MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHL EDRIAQVEEMLKYAQVVDAESVDPNEVSVGKTITYTEVGTDDPETYTIVGSDESDPLNGK ISNDSPIAQALLGKKKGETVSITTPGGKFDVVINEVKA >gi|256541411|gb|ACPV01000063.1| GENE 9 8938 - 11358 3091 806 aa, chain - ## HITS:1 COG:SPy0769_2 KEGG:ns NR:ns ## COG: SPy0769_2 COG0072 # Protein_GI_number: 15674815 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Streptococcus pyogenes M1 GAS # 148 806 1 657 657 496 41.0 1e-140 MLVSYNWLKDFLDLDGQDPYELAEEITRSGVEIPDRVHPMDGLKKLVVGRVLDCEGVEGT HLHLTHVDVGEDEPLQIVCGAPNVAAGEDVIVALHGARIAGNEKIKKGKIRGMESYGMIC GLQEIGFSDSVVPQEFVDGIYVFPADAEVKPGQDVYEALGMDDYILNFDITPNRADTLGM EGAAYEVGAIINQKPKVEEKVVLKEDGPAWTDSLDVKVDEKLAPKFYLRKLENVKIQDSP LWLQRRLWNAGIRPINNVVDVTNYIMLLTGQPMHAYDAKTFANGKFEVRLANKGEKLTLL NEKEVDLDPKDIIITDGKKPVMMAGVMGGLDSEITSETTDVILESAIFDPTLVRKAALRH ANRTEASSRYEKGVNWDATEKAINMAALLLRNDADATVDEGILKATDQKREPVVVKTTAS YLNKVLGTKLSVDEIVKIFDRLCFKVDVDGDNLAVHVPNRRWDISIPADLVEEVGRLYGY DNLESTQPVLPETHGGYSEKEEMMRRMKAIVEGQGLMEAISYSLSSPEKAVRYTKDPKEL VEVKSPLNSSRSAMRENLMTGLVDAASYNFARKQTQLALFEQGRTYDHDGGKFNEHEHLA AIYSGNTFAENWQHLTQKVDFYFVKGQLTNLFNAIGIDPEKVVYEAKGIKGMHPTRTAGI YIDKQYVGMIGMIAHAVTIADKALRGSELYGYEIDLDTIIPMLTKGVTAVPAPKFPAIQR DLSLLVDKPVTNQEIENVIKSNAGKYLTELKVIDVYAGAHIDVGKKSIAYNLTFLNRKDT LTDDVVNNAMDKIVAALENDLAIKVR >gi|256541411|gb|ACPV01000063.1| GENE 10 11362 - 12411 1259 349 aa, chain - ## HITS:1 COG:L0354 KEGG:ns NR:ns ## COG: L0354 COG0016 # Protein_GI_number: 15673911 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Lactococcus lactis # 1 346 1 346 346 439 59.0 1e-123 MDLFDKLKELHEEGLKQINKAKDEKTLNDVRVELVGRKGELTKILHSMREVAPENRREVG QKVNELRDLFNAQLDEAKENIVHAMLVKKLEDEKIDVTLPGREAHLGSKHPINIILDDLE SYFIGMGYQVVQGPEIETDHYCFEMMNIPKDHPARDMQATFYIDDEDLLRSQTSGDQARV LEKHDFSKGPLKMVGPGKVYRRDDDDATHSHQFMQMEGLVIDKNVTMSDLKGTLELIAKH VFGQDRETRLRPSYFPFTEPSVEMDVSCFNCNGKGCPICKYTGWIEVLGAGMVHPNVLEN AGVDSSVYGGFAFGVGLDRFAILKYGIDDIRDFYTNDVRFLEQFRKEER >gi|256541411|gb|ACPV01000063.1| GENE 11 12695 - 13561 846 288 aa, chain - ## HITS:1 COG:Cj0982c KEGG:ns NR:ns ## COG: Cj0982c COG0834 # Protein_GI_number: 15792309 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Campylobacter jejuni # 44 288 30 278 279 224 44.0 1e-58 MAKKIFNWIMAILFVVVVLVAGYIGISRPGINGTASEDRWNSENNVSSIKRRGYLRIAVF GDLPPYGWVNSQGKRVGYDVRLARRVAKDLGVKPKFIQVNANNRIDTLNSNKADIVLANF TLTPERKSVASWTKPYMKVSVGVISPKSAPVTNAKQLKGKSVIVTKGTTAENYFTKQKGV NLLKFDSKTQQFNAIKNGRGAALADDNSYLYAWVKRNPKFTVGIKTIGPNQYISGAVKKG NKSLQKWMDREITKLNRESFFTYDYNKELKPYFGKEIRPSDIVLPQGK >gi|256541411|gb|ACPV01000063.1| GENE 12 13571 - 14311 237 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 21 231 147 355 398 95 34 4e-19 MTEEVLRVEHLNKFYGKHQTLFDINFSLNKGEVLTLLGPSGSGKSTLLRTLNGLEEYEDG AIYFHGKKINPSPKEWQLLRQKIGMVFQSYDLFPNLTVMENILLAPVKVQKRDEDEVKEE AVKLLKQVGLSEYGDAYPRELSGGQKQRVAIVRALVMHPEVMLFDEITASLDPEMVRGVL DIMQRLSDDEHMTMIIVTHEMNFAARIADKVLFLEDGKILEDTPGKEFFAKPKTKRAQEF LESMDF >gi|256541411|gb|ACPV01000063.1| GENE 13 14321 - 14992 591 223 aa, chain - ## HITS:1 COG:SP0710 KEGG:ns NR:ns ## COG: SP0710 COG0765 # Protein_GI_number: 15900608 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 219 1 219 225 191 47.0 8e-49 MLHSGINVLFEGSNFARLMAGLWTSIWIAALSLIIGLAVGTIFGILRTLKNRPIRFVLRL YLEFFRIVPTVVLLYLVYYILPRSLHVNWPATWMAVLAFSMWVAAEFSDIVRGALESVPK TQRESGLALGLNRLQLFRYVLLPQAVKLELPATINLATRVIKTTSLLMIINIMEVINVGQ QIIEANNQQYPAGVFWVYGFIFILYFILDYPLSAWAKRLTAKN >gi|256541411|gb|ACPV01000063.1| GENE 14 14973 - 15386 370 137 aa, chain - ## HITS:1 COG:SP0711 KEGG:ns NR:ns ## COG: SP0711 COG0765 # Protein_GI_number: 15900609 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 137 63 199 206 132 48.0 2e-31 MSAEVCGIIGLIFLGGAYMAEGFTGGFTGVNPSQISSGKALGMNNFQLARYVVFPQGFSL SMPALTANIIFLIKETSIFSVIAIPELTNTALDLIGMYYRSNEYLLMLVVAYAIILIPVI LLLTWLERRVRYASFGD >gi|256541411|gb|ACPV01000063.1| GENE 15 15791 - 16015 73 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLDTQEQQSVLTFIILKDFIFVLLSPNLILNKQLTISNILLCLLNVNSLSPFICPIMYLI KNRLKFRTFFSQTI >gi|256541411|gb|ACPV01000063.1| GENE 16 15935 - 16285 400 116 aa, chain - ## HITS:1 COG:lin1183 KEGG:ns NR:ns ## COG: lin1183 COG1733 # Protein_GI_number: 16800252 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 18 115 5 102 107 85 50.0 3e-17 MQEVKEKKDAAPCKPEDYELCGHFVSAFKIIGKKWNGLIISSLCDTQDMRFKDLARTVEA CSDRVLVERLKELEKDDIFKRSVDQSTGIISYGLTEKGAELKPVFDQVHNWADKWA >gi|256541411|gb|ACPV01000063.1| GENE 17 16393 - 17160 815 255 aa, chain - ## HITS:1 COG:lin1181 KEGG:ns NR:ns ## COG: lin1181 COG0566 # Protein_GI_number: 16800250 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Listeria innocua # 1 252 1 248 252 202 46.0 6e-52 MQQISSVNNATIKKLAKLKQKKYRDDEGLYLIEGFHLFEEALKAGKKYQYILGTEEALDQ ADSEYEVNLSGKNVVLINKAIARHLSSTKNSQEIFMVLKIDQPKEFPFNYGKWVLLDNLA DPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLADVITDFQ DAAIPVYASLLDRSAKQLPDFEKVPQLALIIGNEAHGISKTIASLADEKLYIPIKGQAES LNAAVAAGIMIYHFA >gi|256541411|gb|ACPV01000063.1| GENE 18 17260 - 17532 367 90 aa, chain + ## HITS:1 COG:CAC2830 KEGG:ns NR:ns ## COG: CAC2830 COG1254 # Protein_GI_number: 15896085 # Func_class: C Energy production and conversion # Function: Acylphosphatases # Organism: Clostridium acetobutylicum # 1 90 2 91 91 60 32.0 1e-09 METRKLICSGLVQGVGFRWSTMALANKMGIPGTVKNNADGTVTIYLQADSDKIDRFIEKL PTASGFAQIQNISQESVPGVEKMHDFHVLY >gi|256541411|gb|ACPV01000063.1| GENE 19 17576 - 18541 1016 321 aa, chain + ## HITS:1 COG:L164312 KEGG:ns NR:ns ## COG: L164312 COG0706 # Protein_GI_number: 15672551 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Lactococcus lactis # 14 321 1 307 307 150 33.0 3e-36 MKKIKRYAGVLALLAVATLVLSACGATTDPHVAPHSGIYGWVYQWLGRPLQNIMIQTAQM IGGDNGAGWGIVIITVVVRVILMPLMLVQQNKSVRQQEKMARLQPQMKLIQNAMRHKGIT PDQQMTLSTWQRELYSKNQVSLTGGMGCLPLIIQLPIMWGIYQAVFYSPQLAQSKFFGIS LSSKSVVLAIIATVFTVIQGYISLIGIPEEQKKTMQSMMIVNPIMTLFFSLSFSGALALY WAAGNLVMIVQQVIVTFVLTPSVKKHIADELKDKPIETVVTKEKVDALFNSNSGQSKATT EAKKELHQDLRNRNKGKQKRK >gi|256541411|gb|ACPV01000063.1| GENE 20 18588 - 19076 531 162 aa, chain + ## HITS:1 COG:L89201 KEGG:ns NR:ns ## COG: L89201 COG3760 # Protein_GI_number: 15674012 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 5 158 6 159 163 92 31.0 4e-19 MHTQEILQLLDDHDISYQVFSHPAVYTTKEADKYLKNEDFTKCKTLFIKSRNGKNYYLLM LPENKKVDWKKAQSELLSPSLTFASEDELEEKLKVKSGTVSPFNLLNDSSNTIPLIVDQA AMEENNYVGVHPNDNTKTISLTWTDLARILSSYGHLFEERSL >gi|256541411|gb|ACPV01000063.1| GENE 21 19284 - 20465 1418 393 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01496 NR:ns ## KEGG: LCRIS_01496 # Name: not_defined # Def: S-layer protein # Organism: L.crispatus # Pathway: not_defined # 1 393 1 393 393 692 99.0 0 MKLKRIVLSIVAGTALLVPAALAGQNQLTPVVRASTLKNKITTVKSYTNPTLYNKNGKEL GSQDRINFKKPISFYGQPIVIQGPRVNAFINLNGMPQAIVNGETYADLGDGGYVNMKSVG SYNWNNNEIGIIKNTYIYNSKGNRLSTYRGGKAYLTKGSKIKYAGKSWTTYPDSYFNLGD GTYLKSNNVNTMNGKGVLKLNANTAIYNKNGKRISFNGQQVFPKYSIINYAGKRRTKTQT DAYYYTNLSGSKSYAIKNYKIKGQDYYYIGRGAYIKAMNVGRINGNPVFRDGGATTIVPQ TDLYIYNSKLKKTKQSVKKGQKIRALDPVVLGSGDIAQLFYRIKGTSNYVSWGDYSEYGF EDDEHVGYFNFRVRLNPVKTIENAATRAAEESD >gi|256541411|gb|ACPV01000063.1| GENE 22 20534 - 21352 600 272 aa, chain - ## HITS:1 COG:no KEGG:LJ1642 NR:ns ## KEGG: LJ1642 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 11 266 126 407 413 296 57.0 7e-79 MLVPIAVVHVGPIKNWFLRLLTIYFLDIQYGDAQNLAINPDFCWLHSLTYQGVIAAIALL TMTCFLVKAWGYHFNPNLKFIKSSSFQKKILLALLIMATIDLFYNIPNLTAAIELGILEE TERYLLIVIFLAGFNRFPKYRIPVAIYGSAILFGLSHLSNFGWHGESFTATIAQVIGVMG SAFIWVELYLYTGKLWLPMIYHFLMDYISDLQSGWNSAGWSWNGEITDYIYTVLIVGVPL LFSIWMLFGKRRQVMEDNADLILDLNGRQSMI >gi|256541411|gb|ACPV01000063.1| GENE 23 21412 - 21693 128 93 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01498 NR:ns ## KEGG: LCRIS_01498 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 44 82 1 39 64 64 97.0 1e-09 MKERIFSRKFWQKVFNYQLIIWFLLMISYTFSQRNNHFYFIGDLFNLAFSTAIMGLNFYV QFKKDSSKTNTQIVRWLTIVIFAKFGISLGISC >gi|256541411|gb|ACPV01000063.1| GENE 24 21866 - 23434 1602 522 aa, chain - ## HITS:1 COG:lin1415 KEGG:ns NR:ns ## COG: lin1415 COG0642 # Protein_GI_number: 16800483 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 159 501 141 481 483 281 43.0 2e-75 MIKNKDEEKEAKHSSLIVRWVSIVALTITVSFVIFSVVAYQIVSHQSMEQQQETSNNVVT TMDRTLSSIQDELEISNVIPALSPSTRRILRGGPAISKKDTENKAFSDSLISSISNPDIN VAVYNKHDEIVFTNGNSAPKLKEFAGNQLEEVVNRKKGKMLLTYQKIYSEVNGKLTGYVV VSNSMTYYNSLMSNLLHWMVIISLIAIIIFIAISYILVVNVVRPIKTMSKVAKEVNADPN SEARIKELHRDDELEELATSINQMLDRMQGYIEQQKQFVGDVSHELRTPVAVIEGHLNLL ERWGKDDPQILDESIKASLQEADRMKHLIQEMLDLTRAEQIDVQYPYEVSDVNEIIRRVV ADMAMVHPDFKIQLDEDDLPDDTEIQMYHGHLEQLLVILIDNGIKYSTDRKQINVSAGVT KKNVNIIVQDFGEGISEEDQKKIFNRFYRVDKARTREKGGNGLGLSIAQKLVASYNGTIS VESVEGQGSQFKLKFPRLTKKKAAKLRKLNEKKQMPKSNLEA >gi|256541411|gb|ACPV01000063.1| GENE 25 23421 - 24137 871 238 aa, chain - ## HITS:1 COG:lin1414 KEGG:ns NR:ns ## COG: lin1414 COG0745 # Protein_GI_number: 16800482 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 231 1 225 226 267 69.0 1e-71 MAKILIIEDEKNLSRFVELELQHENYETVVENNGRKGLEDALSQDFDAILLDLMLPDLNG LEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVK IEKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVS RDQLLNKIWGPESNIETNVVEVYVRYLRNKIDAPGQPSYIKTVRGTGYMVRDEDDDQE >gi|256541411|gb|ACPV01000063.1| GENE 26 24306 - 24869 594 187 aa, chain - ## HITS:1 COG:SP1280 KEGG:ns NR:ns ## COG: SP1280 COG1399 # Protein_GI_number: 15901140 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Streptococcus pneumoniae TIGR4 # 2 179 1 180 180 80 29.0 2e-15 MLELSFSRIQNSKEPLTHIERDLEMRPEFFKRSKDLLIDAKNVKVSGDLFYQEPFVTGSF HVAADLVVPSSRSLKPVNYHEDFTFTENYLDRKPTKEELEENDTIVQVENDQIDLQTAVE DNILLHIPTTILTPEEKEKNIFPEGQGWEVVSETSFEEGKKNQVNPAFAKLKVLLDGQDN DKDNKNK >gi|256541411|gb|ACPV01000063.1| GENE 27 24872 - 26023 1031 383 aa, chain - ## HITS:1 COG:SP1742 KEGG:ns NR:ns ## COG: SP1742 COG1323 # Protein_GI_number: 15901574 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 383 1 362 365 206 34.0 8e-53 MSVVGIIAEFNPFHSGHEFLLNQARLVAGNDPIVVLMSGNYVQRGEMAIMSKWERAKVAL QSGADLVFETPFSTAVEPADLFALGNIEQLAKLGVTDLVFGVEDANLNFAYLGKRIAEIP QNHMDFRDYSQTYSTQYNQMVAHEVGYEVNQPNAILGLAYSVANHNLGSPLNLHPVNRIG AGHDDLLQREKVVQSASAIRNLLLHGEDTKNLKYWMPKAEAMVLAEQKIYPNWNLLYPFL KYRIESSSVEELRHIYQMSEGLEYKMKQEIHLARDFTEFLRHIKSKRYTYSRLRRLSLYT LLNVTQDDILASFNHESLMLLGFSKVGRKYLKQQRKEFQTEIVSKVDKRSAKNGSLALQV RVDRLFEQIMGVDQNFGRRPIEV >gi|256541411|gb|ACPV01000063.1| GENE 28 26027 - 26374 397 115 aa, chain - ## HITS:1 COG:BH1328 KEGG:ns NR:ns ## COG: BH1328 COG0799 # Protein_GI_number: 15613891 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Bacillus halodurans # 1 113 1 113 117 100 41.0 9e-22 MTSQEILDFTTQAISDRHGEDTEAYDMRGISILADYYVITSAGSNRQLHAIVNSIVDAAH ENNYTDYRIEGTRDSNWLLLDLGDVVVNVFTKEAREFYNLEKLWANGKQVELKED >gi|256541411|gb|ACPV01000063.1| GENE 29 26392 - 26985 566 197 aa, chain - ## HITS:1 COG:SP1746 KEGG:ns NR:ns ## COG: SP1746 COG1713 # Protein_GI_number: 15901578 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Streptococcus pneumoniae TIGR4 # 14 194 10 190 197 168 45.0 5e-42 MTKLIFKNTYSPFSSEQIVAKEKANMKKKRFEHCVRVSETARKLAKLNGYDEEKAALAGF VHDYAKQVPVEEYRKVIKEQDFDPDLLNWNRAIWHGIVGTFFIERDLKIRDPEILTAVRR HTTGDTKMTTLDKIIFVADFIEPGRDFPGVEEARKVAYASLDEGVGYELQHTLEFLIENK NKVYPRTLEAYNVWGIK >gi|256541411|gb|ACPV01000063.1| GENE 30 26966 - 27619 698 217 aa, chain - ## HITS:1 COG:SPy0308 KEGG:ns NR:ns ## COG: SPy0308 COG1057 # Protein_GI_number: 15674475 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Streptococcus pyogenes M1 GAS # 27 211 24 209 210 166 45.0 2e-41 MVNPKCIEKMPTAKIEAELEQEQGKGRQIGIMGGTFNPVHIAHLVAAEQAMTKLKLDEVW FIPDNIPPHKNAPLTSAKDRATMLDLATRDNPNFRVKLLELFRGGVSYTVDTMRYLKEKA PQNDYYLIMGSDQVNSFHTWKEAPTLAKLVTLVGIRRPGYPQDPQYPMIWVDAPDIRLSS TAIRRSVATGTSIRYLVPEAVREYIEEKGLYLDETNF >gi|256541411|gb|ACPV01000063.1| GENE 31 27630 - 28739 1018 369 aa, chain - ## HITS:1 COG:SPy0306 KEGG:ns NR:ns ## COG: SPy0306 COG1161 # Protein_GI_number: 15674473 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 3 369 2 372 372 374 48.0 1e-103 MDEDIICIGCGAKLQSDDPEKAGYLPKSALDKAKQEENADVYCQRCFRLRHYNEIMPVDL NNDDFLALLNSLGQKKALIVNVVDLFDFSNSLLSSLKRFVGNNDFILVGNKFDLFPKNSK QSKIKDWMRQEANRMGLYPKEIFLVSAKKKLNLEDLIAYINKQSQDKDVYFVGTTNVGKS TLINAIIDMMGDIQDLITASRFPGTTLDKIEIPLENGHFLIDTPGIMTENQLATHLNAKD LELVSPKKPLKPATYQLLPGNTLFLAGLGRIDYLKGESTSFTVYVARGMYIHRTKTANAD DFYKKHKGELLSPPAADDEMAPLKGQEFRTEYKSDLLFGGIGFVTVPKGCVVKTYTPDGI GLGIRRALI >gi|256541411|gb|ACPV01000063.1| GENE 32 28732 - 29256 371 174 aa, chain - ## HITS:1 COG:SPy0305 KEGG:ns NR:ns ## COG: SPy0305 COG2179 # Protein_GI_number: 15674472 # Func_class: R General function prediction only # Function: Predicted hydrolase of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 3 153 25 175 194 130 41.0 1e-30 MLFRPKYTIDTIYNLDPQKLNEMDIKAVFSDLDNTLLAWNKFETAKEMDNFNQKLAKAGI TLVVISNNNAQRVGKVLDPYHIEFVAKSRKPLPFAITKKREAMHLQKDQVMMVGDQLITD MQAGNLAGVKTVLVKPLVETDKWNTRINRFFEKIIFFFLGLSHRVTFKKELSNG >gi|256541411|gb|ACPV01000063.1| GENE 33 29448 - 30599 817 383 aa, chain - ## HITS:1 COG:all7245 KEGG:ns NR:ns ## COG: all7245 COG0675 # Protein_GI_number: 17233261 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Nostoc sp. PCC 7120 # 1 380 1 365 407 129 26.0 7e-30 MIKAQVVELKPNKTMQQELDKLCDYRRYCWNQALATWQDMYEARTLDKDNNPSPNERRIR DELVDNKADWQFALSARCLQLAVKDLANAWKNFFDKAQPDWGKPHFKSKKAPRQGFKTDR AKVVNGKLRLDKPRGIKTWFDIPTYEALKMKQIKVASVFRERGHYYAALSYEEETLVKPR TGRKTAVDVNVGHFNYTGGKINVLPSRLQKLYKRIKHYQRMLAKKRRANGKLAGQSNNYV QVRTKLQRDYRKVANIQNDLLQKFTTKLVNNYDQIVIEDLAVKQMMMTHVASKGMQRSLF SKFRQILTYKCEWYGKELILADKTYPSTQRCTNCGYVKKGDEKITLQGNQKHHTKHNEYI CYECGYTNDRDDNAVLNLLALAK >gi|256541411|gb|ACPV01000063.1| GENE 34 30818 - 31882 512 354 aa, chain + ## HITS:1 COG:CAC3005 KEGG:ns NR:ns ## COG: CAC3005 COG1816 # Protein_GI_number: 15896257 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Clostridium acetobutylicum # 18 348 5 329 334 177 34.0 3e-44 MKKCYNTKQFKQNHQSTERITMRKFIDLHLHLDGSVPVATVKKLMQEHHMPQLTDQKLRQ ELSVDNSCASLEQFLAKFDLPNQLMKTKHDLEMIVFDLLCELKQQGLVYAEIRFAPQLHT KNGLTQRQVIAAAVSGITKFYQKQKADKDQPELHAGLILCLMRFAHNEKENMETVELAKE FLGHGVVGLDLAGAEGPIPNINYQHFFNRAQELHLPYTIHAGEAAGPDSIRQALKIGAKR IGHGIRCTEDPALTQYLIDHQIILECCATSNMNTKAFDQIDSYPIKKLLHMGMKVTLNSD DMIVSNTNLPHEYQLLEEKTALTPEEETTLYLNAVDAAFTTPDEKIRLRALIQK >gi|256541411|gb|ACPV01000063.1| GENE 35 31930 - 32286 595 118 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227877776|ref|ZP_03995809.1| 50S ribosomal protein L20 [Lactobacillus crispatus JV-V01] # 1 118 1 118 118 233 100 1e-60 MPRVKGGTVTRQRRKKIMKLAKGYRGAKHMQFKAASTQLFVSYKYAFRDRRRRKSEFRKL WIARINAAARQNDISYSKLMHGLKLAGVDMNRKMLADIAYNDSKTFAQLAETAKKALN >gi|256541411|gb|ACPV01000063.1| GENE 36 32331 - 32531 347 66 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227877777|ref|ZP_03995810.1| 50S ribosomal protein L35 [Lactobacillus crispatus JV-V01] # 1 66 1 66 66 138 100 7e-32 MPKMKTHRASAKRFKRTANGGLKRHHAFTGHRFHGKTKKQRRHLRKAAMVSKSDMKRIKQ MVAQMH >gi|256541411|gb|ACPV01000063.1| GENE 37 32553 - 33068 390 171 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 1 163 1 164 166 154 47 7e-37 LNDRIRAREVRLIDEDGQQVGVMSKSDALRRASDAGLDLALISPNAKPPVARIMDYGKYR FEQQKKLKEARKNSKTVSVKEIRLSPTIEGNDFETKLKHVRKFISKEGAKVRVSIRFRGR AITHKELGQQVLEKMAEVTSDIANVISKPKMEGRSMFLMLAPKSDKDKKKK >gi|256541411|gb|ACPV01000063.1| GENE 38 33294 - 34211 824 305 aa, chain - ## HITS:1 COG:STM0051 KEGG:ns NR:ns ## COG: STM0051 COG1957 # Protein_GI_number: 16763441 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Salmonella typhimurium LT2 # 5 302 7 303 306 218 37.0 1e-56 MKKPVIISTDPGIDDAVALAICLFSPAIEVKSIIATNGNVNAQQALINILKLEKFFGKSI PVVKGVERSLVKQSIRAKEIHGKSGMDGYDFPNPSFELVDHGISPVAIHKIVAASSEKVT LIGIAPLTDYALYVRLYPDDIKNIKELIIMGGAMGRGNYGIYSEFNIASDPEAAKIIFES GLKIRVAPLELGAQAKIMPEVSNQIRQLGKAGDMFYDLFKKFRGGSFQTGLKIYDALAAG VLLNPQMFKFKNTHVEIDVQTGYTYGASLMDFKNKLDLPNNAEIAVSVDPEIFSKWFVEA LSKTR >gi|256541411|gb|ACPV01000063.1| GENE 39 34406 - 35059 377 217 aa, chain + ## HITS:1 COG:mll6253_1 KEGG:ns NR:ns ## COG: mll6253_1 COG1176 # Protein_GI_number: 13475227 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Mesorhizobium loti # 4 185 21 202 340 106 31.0 3e-23 MKIKSGFWLLFPAFISVLIFAFFPLIQIAIPTFQDSKGFLHLYTEFLKNTYNLHVIGRTF KIALLTMIIVLILGIPISLWIARQKSKVRSILTIIILFPMLTNAVVRNFAWIIILGRNGI LNKFLMSIHLINSPLNILYTDTAIIIGSAYLFLPIMIISLVGSISELNIEAEEAAAVLGA NPDKNCNTTISLRNFNRMHFGLCRCDDSIYYPTNFGR >gi|256541411|gb|ACPV01000063.1| GENE 40 35022 - 35228 106 68 aa, chain + ## HITS:1 COG:no KEGG:Ldb2178 NR:ns ## KEGG: Ldb2178 # Name: potB2 # Def: spermidine/putrescine ABC transporter permease # Organism: L.delbrueckii # Pathway: not_defined # 1 66 210 275 276 89 75.0 5e-17 MTAYTTPQILGGNKNLVMSTLIYQQAMTLGNWKNASVIAIVLIIISALSMILMRKASRAL DRRPNINA >gi|256541411|gb|ACPV01000063.1| GENE 41 35221 - 36018 481 265 aa, chain + ## HITS:1 COG:AGl888 KEGG:ns NR:ns ## COG: AGl888 COG1177 # Protein_GI_number: 15890560 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 14 259 12 257 259 159 35.0 5e-39 MLNRKNKTLAIISIIILILLMFPLLLVIITSFNNQDSISLPIKGFTLSWYANIFQQPDFI SGFESSLFVAIIASLSALIIGIPAVYALTRFNIVHKSWFHSFFLSPTLIPEIVIGFALYQ AAVVTLRLPVMPSLIIGHFLLCLPYVIRLVTASMLLMDKNIEEAAWVCGCSPQKGFFLIV LPNIKASIVAAFMMCFINSFNNIPISLFMNGPSITMLPPAILNYLQNNYDPTVSAISVVL MIFTALIMLLTEKLVGLNKLTDRSN >gi|256541411|gb|ACPV01000063.1| GENE 42 36020 - 37060 674 346 aa, chain + ## HITS:1 COG:AGl887 KEGG:ns NR:ns ## COG: AGl887 COG3842 # Protein_GI_number: 15890559 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 15 337 17 330 341 276 43.0 4e-74 MANLEVKDLAKSYNGKTKVLKDISFSVKNGDLVSILGPSGCGKTTTLRIIAGLIPATDGQ VLVDGEDVGKVPVYKRNFGMVFQSYALFPHMTVFNNVAFGLKMKKMSKSDIQKRVDQILK ITGLSKLASRYPKELSGGQQQRVSLARALVVNPQLLLMDEPLSNLDAKLRIKMRSEIREL QQKLKMTVLFVTHDQRECFAISDKVLIMKDGKIDQYDTPENIFHHPSSEYVARFIGYDNF INVDEIINDRQIKSKDLVFLTDENNIQAKVLTIRPENILINSEENPSNNLIDGTITSLEY LGQSFKYKVSTSLGDFTVEESRKSMRSSGDKVQLYLPSKHLHPLSR >gi|256541411|gb|ACPV01000063.1| GENE 43 37085 - 38146 1268 353 aa, chain + ## HITS:1 COG:SMb21273 KEGG:ns NR:ns ## COG: SMb21273 COG0687 # Protein_GI_number: 16264525 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Sinorhizobium meliloti # 4 348 2 335 340 150 29.0 4e-36 MNFKKVGLLAASFLLVGSVAFGTTACSSQSSSNGGNLTVSTFGLSTKQMRNDVLNPFAKQ SSVKVKTQFGDSATRLTQIEHNPNTGVDVIELAQNNAVTGDKKKLFKKLDFSKISNFKYL SKSEQKLAKETNTVPYTVNSLGIIYNPKKVNINSWKDLWSSKLKNKIAVPDMTTTFGPAM LYIAGDYAGTSVTKDNGNAAFKAMKELKPNVVKTYTQSSDLSNMFKSGEIEAAVVGDYAV GMLQATNPNLKYIVPKSGTYANYDNVSILKNSKNSAAAYKYINFRLSEKIQKKVAGLKSL NNAPVNTQVKLTPAEAANKTYGSVAKRAKTINFFFVNSHMSNWISRWNKIMNK >gi|256541411|gb|ACPV01000063.1| GENE 44 38215 - 39918 1577 567 aa, chain + ## HITS:1 COG:BH0640 KEGG:ns NR:ns ## COG: BH0640 COG1001 # Protein_GI_number: 15613203 # Func_class: F Nucleotide transport and metabolism # Function: Adenine deaminase # Organism: Bacillus halodurans # 3 558 17 571 585 258 31.0 3e-68 MTEVDLIIKNAHVFNVYLRKFQDVQVSIKNGKFYWINKELPNLKAKKVIDLQGKYLIPGF VDAHMHIDSSMTTPKIMGETILKYGTTTIIADDHEVTNVAGINGLKDFINEDSPIDIFFG IPSSVPSTNPQMETTGGKIGVPEVKELLKDPRFICLGEVMNFKDMTSDKDTLIKDIINTC HKTKPTMPIEGHTPAYHGEDLAKILYAGVTTDHTQQTRDLVNEKIRNGMFVEVQLKSMHP DVINTIIDNKYFEHVALVTDDSMPDTLLKGHLNLLVKKAINMGMKPEDAIYISTYIPARH MGLWDRGAIAPGRVADFSILDNLEELSIADVYKNGISAKETIKNTSQDDFSPNSLTTSVK APKLTKQDLLLKTNLVDNGSVTANVIQINPVGTFTNHIQKRLAVHNHIVDWQSANLALII VQERYGLNDGKFSLGLVDRGIIGDGAVGATWAHDHHNLMVMGTNIDGMIDIQHQLINQQG GYIVARGEKIAANAPLPIGGVVSNQPMKILGEQIGNIRKNLVELGYKNTNEIMSFSTLSL LVSPSLKISDKGLFEVKSQKKVPLFEK >gi|256541411|gb|ACPV01000063.1| GENE 45 40806 - 41102 180 98 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 85 232 312 317 73 45 2e-37 TITTDNGSEFADLSNLEKVSNTLVYYAHPYTSCDKGTVERHNGLIRRFIPKGDYINNYSL QEIIDIETWCNSLPRKLLAYHTPDEIFERELDKIYQAA >gi|256541411|gb|ACPV01000063.1| GENE 46 41795 - 42559 477 254 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01519 NR:ns ## KEGG: LCRIS_01519 # Name: not_defined # Def: ABC-type polysaccharide/polyol phosphate export system, permease component # Organism: L.crispatus # Pathway: not_defined # 1 254 1 254 254 272 66.0 1e-71 MISFKAEFWRQFYLYKRYLFNYISEFFLLILMFMAIFWGGSLVGGGVLGKSLNALVVGYV LWSLIENTISQMGSTVMNNAKSGILEQQYLMPISSRRLFLNKSIANIVVAFVQAILILIA VMAISDHWISFPVIMIVPFILALLTTVGLGYLIVSLVLRFKRIGSTLVIFQYIYLGILLV NFENYSNLTKCLSCLLPICPMVSWMRLAVNNRPYNLAFYLSESIFNTVLWLIIGLLVFNL ADKYVKKNGTLSFY >gi|256541411|gb|ACPV01000063.1| GENE 47 42556 - 43482 367 308 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 4 300 12 304 312 145 33 3e-34 MTLLSVNNISKTYQKAHKKAVSDVSFNVDSGDIVAFLGPNGAGKTTTLKMILNLVSPDKG TVVFDGKDVTHNNLFLLKNTGVLLEGSRNMYWALSPMENFVYWGGQRGLSKKEAEKRGET FLKQFGLLDKKYTSITRLSRGMQQVVGICCAMIAEPKLLILDEPTLGLDLNATQIMIKSL NMLSANGVGILVTTHQMEFAQEIANKILLINHGKLVFSNSIKDSLKKLNKQEIFEVHFTQ ELTASEKEDILASCELTKKTDGVYRLGVKPQASLSQVLKLLSELPISSIQTVTRGLDEIF KYYTEKEK >gi|256541411|gb|ACPV01000063.1| GENE 48 43519 - 43956 318 145 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01521 NR:ns ## KEGG: LCRIS_01521 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 12 144 8 140 143 130 57.0 1e-29 MKNIKDLLYNGLISGLIGIGIGTIWMAMDFLFSLNGQNPATAKIYLKTFLFWTIISFLIG IFFYLASWIFNSEKWSLKKQIFINFFVCFVAWFLLNLLIDNFSISLKMVIRVTVDFIIMY AIAYGGYFLHLWNTVRRINAKLKEK >gi|256541411|gb|ACPV01000063.1| GENE 49 43953 - 44393 289 146 aa, chain - ## HITS:1 COG:SA2153 KEGG:ns NR:ns ## COG: SA2153 COG3279 # Protein_GI_number: 15927943 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Staphylococcus aureus N315 # 3 146 2 147 147 65 30.0 3e-11 MQLKVKLNIDPSLPEEKAEFWLKKMTARFERITKELNSEQDFLWCYLDGDAYEINFSQIY AIQIENEKTMICTQNQKYVYRGRLYQVQSVLPNDFIMISRGAIVNYHFIDHLEIINTGNI DALLENGLRVQVSRRRIKDLKERLGL >gi|256541411|gb|ACPV01000063.1| GENE 50 44553 - 44780 263 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843641|ref|ZP_05549129.1| ## NR: gi|256843641|ref|ZP_05549129.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 75 6 80 80 109 100.0 6e-23 MKKRFKLAAIFVAAMFAAAPVVGMAETSTTVSADADIMQQYTFNDSVLDFTPTLKVYIAK GHKFTTSKETAYKAK >gi|256541411|gb|ACPV01000063.1| GENE 51 45039 - 45158 75 39 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227877796|ref|ZP_03995827.1| ## NR: gi|227877796|ref|ZP_03995827.1| hypothetical protein HMPREF0506_0828 [Lactobacillus crispatus JV-V01] # 1 39 1 39 39 62 100.0 7e-09 MLDVLNNKVELSNVHFAEHKLAIEDAKTMLENEGWIATK Prediction of potential genes in microbial genomes Time: Wed May 25 05:29:54 2011 Seq name: gi|256541410|gb|ACPV01000064.1| Lactobacillus crispatus 125-2-CHN cont1.64, whole genome shotgun sequence Length of sequence - 1369 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 4 - 1263 895 ## COG1808 Predicted membrane protein - Prom 1309 - 1368 6.0 Predicted protein(s) >gi|256541410|gb|ACPV01000064.1| GENE 1 4 - 1263 895 419 aa, chain - ## HITS:1 COG:SP1264 KEGG:ns NR:ns ## COG: SP1264 COG1808 # Protein_GI_number: 15901124 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 7 325 5 318 347 270 44.0 4e-72 MIIRQRKNYLTSQFLSKISADGTLNIENLIVLTCAIFIASIGLNVNSTATIIGAMLISPL MGPLLAIGTGLALYDVHLLRKGTISLLAEIIISLAASTIYFHFSPLTYASQEIIARTSPT IWDAMIAFFGGVAGIIGARKKEANNIVPGVAIATALMPPACTIGYSIAAGNLKYFLGSSY LFLINCVFIILTAFMGVKIMKWLSYSTKQSKLFFLHKPTFKEFVIILVVIILIIPSILSA NQMVNKTLVDQNVQNLVVNELGNVNLIKENVDTQGKIINLTVSGDKINAKKIQAAKANLT KYDLKGYSLNIVQVAQVNPNAENQLDRQVNNIINQRQHEQEQADEKRQQEQEKRNQKIRK LSSAISSVTAVSDNKNKQITLIELKKPLSKKRKNALVRQIKDKYPNINLVEFVQENIKN Prediction of potential genes in microbial genomes Time: Wed May 25 05:29:58 2011 Seq name: gi|256541409|gb|ACPV01000065.1| Lactobacillus crispatus 125-2-CHN cont1.65, whole genome shotgun sequence Length of sequence - 10315 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 3, operones - 1 average op.length - 7.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 436 386 ## LBA1539 hypothetical protein - Prom 606 - 665 6.8 2 2 Op 1 2/0.000 - CDS 672 - 2606 2831 ## COG0441 Threonyl-tRNA synthetase - Prom 2626 - 2685 4.2 - Term 2617 - 2654 6.3 3 2 Op 2 8/0.000 - CDS 2892 - 3800 777 ## COG1484 DNA replication protein 4 2 Op 3 6/0.000 - CDS 3820 - 5154 1168 ## COG3611 Replication initiation/membrane attachment protein 5 2 Op 4 1/0.000 - CDS 5157 - 5624 429 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 6 2 Op 5 4/0.000 - CDS 5627 - 6229 442 ## COG0237 Dephospho-CoA kinase 7 2 Op 6 4/0.000 - CDS 6229 - 7056 578 ## COG0266 Formamidopyrimidine-DNA glycosylase 8 2 Op 7 . - CDS 7065 - 9728 2580 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains - Prom 9766 - 9825 7.4 9 3 Tu 1 . - CDS 10026 - 10277 132 ## LGAS_0324 hypothetical protein Predicted protein(s) >gi|256541409|gb|ACPV01000065.1| GENE 1 1 - 436 386 145 aa, chain - ## HITS:1 COG:no KEGG:LBA1539 NR:ns ## KEGG: LBA1539 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 23 145 31 149 171 113 54.0 2e-24 MTTALFMLAIIVMGQNRVDAASWGAKNLFTTPKETRGTWYYKQEGKIKKLKITTHTFNKI KLYKMLSSNQAIKWTKKLAKTDKKSGYKLAQKVGTSQYEATDFKFYKTAGFAANGWLSSD RADSGHTYVAIKKKDKSNNDKVDAL >gi|256541409|gb|ACPV01000065.1| GENE 2 672 - 2606 2831 644 aa, chain - ## HITS:1 COG:L0357 KEGG:ns NR:ns ## COG: L0357 COG0441 # Protein_GI_number: 15673893 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Lactococcus lactis # 5 642 4 644 646 781 58.0 0 MSFSITLPDGSKKDFDKAVSVKEVASSIATSLGKAAVGAKVNGVVKPLDYEIDNDVEVAI LTDKDEEGLDILRATAAFALEAVAKNKYPELRLGQHVADEGGFYVDTDKDDQIKVTELPE LEKAMEKLVKSGQAIEHVVMDKSELEDIFKDDPYKTDLLKKIDADKVDAYKLGDFVDFGF DALLPNTGKIKHFKLLSVAGAYWLGKSSNPMLQRIFGTAFFKEAALKEDLKRRAEIKERD HRTIGRDLDFFFVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGYQHVYTPVLMNLD AYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRSYRDLPLRVAELGM MHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQTEFAKILKLIMDVYKDFDITDYYFRL SYRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKTALGN DETMSTIQLDFMLPERFGLTYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW LAPVQVKIIPVNLDAHGEYAEKVRQELAKRGFRAEVDTRNEKMGYKIRESQTQKVPYTLV LGDEEMKNGSVNVRRYGTDEEISKSLTDFINEIDADVKSYSREN >gi|256541409|gb|ACPV01000065.1| GENE 3 2892 - 3800 777 302 aa, chain - ## HITS:1 COG:lin1595 KEGG:ns NR:ns ## COG: lin1595 COG1484 # Protein_GI_number: 16800663 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Listeria innocua # 1 298 1 306 307 205 38.0 7e-53 MEAIGDLLKKIVKERNLGNEKELLKTALHDPDVQAFLQANREKIDKAMIRNSMANIYEYY AQKHSQNQVLAGYAPQLFLNGKVIDVRYKPTEAKIVADQQRAAKRRLHLIDLPAKLHDVN LSDIEVTNDRQQALTLIYDFLKKYKADPHQQGLYLSGDFGIGKTYMLAGLANYVATNFDR NVVFLHVPTFIAGLSSHFGDNSLQDEIRNLAECDVLILDDIGAETLSQWSRDDVLGVILQ ARMDNVLPTFFSSNLDMEALESHFEETRNATDPVKAKRLMQRVRFLAKEVVVSGPDRRNF SH >gi|256541409|gb|ACPV01000065.1| GENE 4 3820 - 5154 1168 444 aa, chain - ## HITS:1 COG:lin1596 KEGG:ns NR:ns ## COG: lin1596 COG3611 # Protein_GI_number: 16800664 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Listeria innocua # 11 423 14 427 458 76 24.0 8e-14 MFATSDPKHLYYVANKITLFPENEKILIKLYQPLVGAVAIALYQTLINDYDPYGIVSDAK GIYSLQEQLDCSLKDMFHSLHKLEAVGLVQTFLADNVFNNIIVFKLLQVPSVDKFFATPL LASLLKEKVGSPTFHDLSHAFAKEAKLREKPIKNARDVSANFFDVFRLPGDEAINPSNEV VEAAQENKAPEVETAEINAQDPIDWDLIKDQYNVYQIPAQEVEIKKNQIRGLIQTYNLSE QEFVDETVPCLHGTHKLNMHEISNTIAENYKRLHTRENIQKQIEEGKKRAIATIKGLDAN DRKLLLEANENSPSEFLYKLKTEKGGIVAPGENYIINQLHTQYGLPEDLINILIHTCLTY DTVVTSNRAYRIANDWLQGGISTGVQALEYVKKRKADILKKKNRQSYRQNKRVEKGTDWS KKKAKNEGMSIEQLKDIFKDLKNK >gi|256541409|gb|ACPV01000065.1| GENE 5 5157 - 5624 429 155 aa, chain - ## HITS:1 COG:BH3146 KEGG:ns NR:ns ## COG: BH3146 COG1327 # Protein_GI_number: 15615708 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Bacillus halodurans # 1 153 1 153 153 171 54.0 7e-43 MECPNCHQNASRVIDSRPSDENRAIRRRRECENCCFRFTTFERVETAPLLVVKNDGTREP FSRKKILHGVMAAGQKRPISSEQFEQLVDRVENKIRKQGVSEISSKKIGQYVMDDLANLD DVAYIRFASIYREFKDMSSFMKTMEDMMAKKGKGN >gi|256541409|gb|ACPV01000065.1| GENE 6 5627 - 6229 442 200 aa, chain - ## HITS:1 COG:BS_ytaG KEGG:ns NR:ns ## COG: BS_ytaG COG0237 # Protein_GI_number: 16079958 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Bacillus subtilis # 1 193 1 193 197 127 38.0 2e-29 MSYVLALTGGIATGKSTADQFFKANKIPVIDDDQIAHDLMEPGQASWQAIKDYFGSEYLN DDQTINRKKLGQLVFKDSRALTKLNELTHPLIFLQTKKLLNQYQAQPIVILDVPLYFESG MDKKDIADGVLVITLPEKMQLQRLKERNHLTDEEARIRMQSQLPMVKKEQLADFVIENTG TIKELENKLAQLLVKIREEG >gi|256541409|gb|ACPV01000065.1| GENE 7 6229 - 7056 578 275 aa, chain - ## HITS:1 COG:BS_mutM KEGG:ns NR:ns ## COG: BS_mutM COG0266 # Protein_GI_number: 16079960 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Bacillus subtilis # 1 272 3 275 278 248 47.0 1e-65 MPEMPEVETVRRTLTPLIVGKTIEKVVLWYPKIVATDHKKFIKELPGKRVLKIDRYAKYL LIRLSDNLTIVSHLRMEGKYHLTTPDAPKDKHDHVEFIFTDQTALRYNDVRKFGRMQLIL TGTERQVTGIGKLGPEPNSIEFSSDYFIKALSRKKKNIKNVLLDQTTVAGLGNIYVDETL WQSGIHPLSAANKIPSEKAKELWQNINQTIKIATKKRGTTVHTYLDANGNVGGYQEMLKV YGHAGEPCAKCGTELEKIKVSGRGTTFCPHCQVVY >gi|256541409|gb|ACPV01000065.1| GENE 8 7065 - 9728 2580 887 aa, chain - ## HITS:1 COG:BS_polA_2 KEGG:ns NR:ns ## COG: BS_polA_2 COG0749 # Protein_GI_number: 16079961 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Bacillus subtilis # 328 887 2 560 560 579 54.0 1e-165 MADKKLLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLLKDVDPTHIL VAFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIG TFVDKGEKNGFTTTVVTGDRDLTQLASPSTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTE FIDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIRDKD KAFLAKKLATIDRDSPVTLDIDDIKRQPVDYEKLRQFYEKMNFRKFLADLNASGAGQDST EVEKVEYIVLNDDNVKDVKATEDDTIEFYLEMLGANYHLAPFVGFSLKITDKIYVSRDVE LLEEDNIKHILEDEKIKKNVFDLKRTMVAAHRLDIHTHGLDYDMLLASYLINNENNSNDL GEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKINAIESLKKPLLEKLKDHE QDDLFETIEIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQAGEKFNLN SPKQLGHILFEKLGLPPIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVK GLLDVIQSDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAVN FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHR RRYLPDIHAKKFTVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKIVVQVH DELIFDVPKDELETIKKIVPEVMQSAVKLDVPLIADSGWGHNWYDAK >gi|256541409|gb|ACPV01000065.1| GENE 9 10026 - 10277 132 83 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0324 NR:ns ## KEGG: LGAS_0324 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 70 62 131 146 68 47.0 5e-11 MILKWYDTDYKTGHLRSGNMVTIFMLIATVAKIEVILNSNPHWCLPPFNEFLFSSEIKRS VFKPDDELKQFIRDFNKKHQKQN Prediction of potential genes in microbial genomes Time: Wed May 25 05:30:03 2011 Seq name: gi|256541408|gb|ACPV01000066.1| Lactobacillus crispatus 125-2-CHN cont1.66, whole genome shotgun sequence Length of sequence - 3364 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 2, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 8 - 67 8.4 1 1 Op 1 . + CDS 175 - 351 186 ## gi|227878154|ref|ZP_03996130.1| hypothetical protein HMPREF0506_1131 2 1 Op 2 . + CDS 348 - 695 453 ## PROTEIN SUPPORTED gi|148984516|ref|ZP_01817804.1| 50S ribosomal protein L9 3 1 Op 3 . + CDS 760 - 990 372 ## lhv_2927 transposase ORF_B 4 1 Op 4 . + CDS 926 - 2272 505 ## COG3436 Transposase and inactivated derivatives + Term 2287 - 2327 5.6 - Term 2369 - 2422 11.6 5 2 Tu 1 . - CDS 2443 - 3363 1339 ## LGAS_1671 hypothetical protein Predicted protein(s) >gi|256541408|gb|ACPV01000066.1| GENE 1 175 - 351 186 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878154|ref|ZP_03996130.1| ## NR: gi|227878154|ref|ZP_03996130.1| hypothetical protein HMPREF0506_1131 [Lactobacillus crispatus JV-V01] # 1 58 6 63 63 83 100.0 4e-15 MIEKQQPIVALGRSSKPKKARPPRNNLLLSLKKNDLELNFYSSLDPEIMNKLLEKVLP >gi|256541408|gb|ACPV01000066.1| GENE 2 348 - 695 453 115 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148984516|ref|ZP_01817804.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP3-BS71] # 1 106 2 107 107 179 77 4e-45 MIKLSDLGQVYIVCGKTDLRKGIDGLATLVKEQFELDPFSGKVFLFCGGSKDRFKALYWD GQGFWLLYKRFENGKLNWPRNQNEVQALSSEQVDWLMKGFAINPKIKNTKACEFY >gi|256541408|gb|ACPV01000066.1| GENE 3 760 - 990 372 76 aa, chain + ## HITS:1 COG:no KEGG:lhv_2927 NR:ns ## KEGG: lhv_2927 # Name: not_defined # Def: transposase ORF_B # Organism: L.helveticus # Pathway: not_defined # 4 63 10 69 76 66 66.0 3e-10 MSQENLEKIIAQQATTIQNLTDEIKLLREQVAYLTQKRYGKSSEQMPLNGQTSLFDEPDA QDDGERPRRRRSDYYL >gi|256541408|gb|ACPV01000066.1| GENE 4 926 - 2272 505 448 aa, chain + ## HITS:1 COG:SPy0131 KEGG:ns NR:ns ## COG: SPy0131 COG3436 # Protein_GI_number: 15674346 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 17 448 18 450 450 532 61.0 1e-151 MNLMLKMTENVPDAAVQTITYKRQAHKRKRADLLAALPAEEVHHELGDKHCPDCHHELIE IGKQSVRQELLFIPAQLKRLDHIQHAYKCKYCSQRNLSDKIIKAAVPKAPLNHGLGSASL IAHSLYQKYEMKVPDYRQESDWKKMGLEVSRQMLNYWDLKSSQYYFKPVYDLLKQKLLMR PILHADETYYTVLESKTIKTYYWVFLSGKHDQYGITLYHHDPSRSCKVALNFLGNYPGYL HCDMWQAYEQLPKATLVGCWAHVRRKFHEAVPQQASEKSLAQKGLNYCNRMFYLEQTWEN LSKQERYQLRQAKLKPLMQEFFNWCEKNKITVLPGSKLGRAINYTLKHQATFEHVLLDGN LELSNNKAERAVKSLVMGRKNWLFSQSFEGATASGFILSLIETAKRNGLDPEKYLNYLLQ KLPNEEILDSETLEAYLPWQEKIQINCK >gi|256541408|gb|ACPV01000066.1| GENE 5 2443 - 3363 1339 306 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1671 NR:ns ## KEGG: LGAS_1671 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 67 306 2310 2552 2552 220 57.0 5e-56 INVVDPVTGKISTSVQTAKFTREDKNGNSGYKDPVTGKTTINPWTPAKQGLRAVNVEQIN GYVAKVDGNVDAVVVTPDSANMVVTITYQANKPEGQNIAVKKDTVPDPADGIKNKDDLPD GTKYTWEKTPDVSKPGDVPAIVVVTYPDGSKDKVDVHIVVDNPTPEPQDVHTTPGVVPDP STAIKNKDEMPDGTKYTWKEVPDVNSVGEKTGIVTVTFPDGTSVDVKVNVFVDPVKENNN TIADSNNTNSSDKNTANAATVNGKSENKKTLPQTGSKSDAAAIAGLAVAIAGSLLGLGVN RKKRQK Prediction of potential genes in microbial genomes Time: Wed May 25 05:30:16 2011 Seq name: gi|256541407|gb|ACPV01000067.1| Lactobacillus crispatus 125-2-CHN cont1.67, whole genome shotgun sequence Length of sequence - 8460 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 2592 3082 ## LAR_0090 hypothetical protein 2 1 Op 2 . - CDS 2615 - 4414 2125 ## LBA1634 surface protein - Prom 4601 - 4660 7.7 - Term 5110 - 5143 2.2 3 2 Tu 1 . - CDS 5153 - 6796 1562 ## COG0151 Phosphoribosylamine-glycine ligase - Prom 6826 - 6885 6.1 - Term 6893 - 6930 6.4 4 3 Op 1 . - CDS 6937 - 7818 1125 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs 5 3 Op 2 . - CDS 7836 - 8150 458 ## lhv_1631 putative DNA-damage-inducible protein - Prom 8270 - 8329 5.2 Predicted protein(s) >gi|256541407|gb|ACPV01000067.1| GENE 1 3 - 2592 3082 863 aa, chain - ## HITS:1 COG:no KEGG:LAR_0090 NR:ns ## KEGG: LAR_0090 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 1 352 14 362 656 228 45.0 1e-57 MEGVYNSTTVNGPTPVAQWDQGNKTTIPNDVWYVRYLISANQWGNNSGQFMSKGQHPNTV VAQKGVDTLYNSNATVLMSKNQGADKYENGTMPTEVQQALHLNSFLNNFNLWRPQRMAMG SKLNDSPDVKIDDFDKYHPEVQTIDGTTRQTLSDLDANKGLKDLIGPDEQPITDFKDIVK HVTWYNSATDKDEWNKIMIQPTDSKDPSARVPYPKPQNPTGNLKTTDGFAWAKVTYADGS VDFVKIPLKVTEKKYSEELTPSYPDVSVEQGKSDSVDPSFKDENDKAADAPAGTKYTAGE NTPDWIKVDPDTGKVTVSPTDDTSVGSHDISVTVTYPDSSTDQLTVPVTVTEKSNLAEKY PVSYDKLNVEKPSGDTPATGAVDPKAAADMPEGAITGYEKGDFDAPAGVTIDVNHDTGKV TASVGKNATLGSFEVPVKVTYSDGTYAEVKVPVSITGNKVDPGSGDVVYYGDQSMVVFNG NLTTVHKTTDSHELSAKDSAFQTITYYSDWNKKGNIVSDYNKHVIYKLSADGTKYVNEAD ATDSFDASAISFNWQKGYGVNTGVDNFSNGSADTLYQLENGAVNSEEQTDANDPSGLAGN SKYRYDFSISDTNVLQKLGLSPAGYNAWANVYYNFLGATGKINIPVNYGSEVSTDEAGIK NYLATNSISGKTFVNGNPTGIKWAENGMPGKDGKFAASNMTGIVEFTFDNGTKLNVQVTF KTGSHVPTSGSKVNDDTNLYVERTIEYDVTGTGHSPINSVTQKVHYVRDGYHKINADGTD AGEIIWNEWKLADGQTAEFPEYSVDQITGYDAYINGAKATQVDAAKVAETNGTPQNGQNI TVTYKKQNSTPVPYKPGKDGVND >gi|256541407|gb|ACPV01000067.1| GENE 2 2615 - 4414 2125 599 aa, chain - ## HITS:1 COG:no KEGG:LBA1634 NR:ns ## KEGG: LBA1634 # Name: not_defined # Def: surface protein # Organism: L.acidophilus # Pathway: not_defined # 1 595 1 658 1924 202 31.0 3e-50 MLSKRNYQEHLRKMAPKKERFSIRKFSVGAASVLIGFTFVSMAGSHKVQAADVPDKSVVV DTFNKDKSQELTENKTIEMPKAEKTAVSSVVQKGASANKIEAENTTQVDKNTEGSVKVQE NKDAVQPKTVNNENVLNVSKAQSQSNEAVTKNAAESKVAALRAFRAAPQATQSQDAKDFQ SLVNAMNDSSIGTINITNDITITGKVNGLTTSGISDINKHYLYLQSKGSARDLTINGNGH TINFAGYSIALQDENYHNAAGPWNITLKDMTIEGSKYGYSPISFYSSKTNTENSKLIFDG VTANLNDRPLVDKYGENLPVHFAGDNNIMLNNMSIGYNLVTGKTVKFDSGNTTFNVGGKV TGNAINPDNWVIRSTENASNSENPSTLINEGATVTINAKSDDLRGIYAGRSLTAGQPIYG VTVINGTLNANMAAGHSTAIWSHDLEIGKKGNVTIHTKQTNQADGVENSTANSVTNYNGT HYAPISLGVGPISSVASPLSKQTAASLINNGSLTIIRDTTEKTLVPLISMGDGGLSTNTT FKFVVGAGATLDLQDNAGTFQYGTEPSTPLNGLITLWGYEWYRFIGISYPSICQLTTYW >gi|256541407|gb|ACPV01000067.1| GENE 3 5153 - 6796 1562 547 aa, chain - ## HITS:1 COG:L153005 KEGG:ns NR:ns ## COG: L153005 COG0151 # Protein_GI_number: 15673495 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Lactococcus lactis # 191 545 60 413 413 311 46.0 1e-84 MFGRTYSDLGPVVGQINGEDIRANQLERRGYDWENGYGTPSDGQDTNRDGQPVRKLTKDA KSIIIFWSCSGSTKLLASKVACETGADILEITLRNPYPANYRKTLNRANCERIQNDSSEL EMQLPDLSQYDTIYLGYQTWTMTLSQPMKAFLLEYGGEFSNKEIAPFLSEGGYGSGDSTE LIREFIARDGGKNKKVDWTFVGPENVLCAGITDKFEKAGQKIFGPNQRTAQLEGSKDYAL RFMNKYDVPTARHETFTSAETCIAGLKDFAYPVVIKEDGLAGGKGVTIAKNQDVAEETIR EMFAGGQTAVVLEECLVGPEYSMFVAVSEDQFTILPMAQDHKRVGDGDKGPNTGGMGSYS PLPQLKKEDRQRMIDEIVKPTMNGLVQGDYHYCGVLYIGLMMTENGPKVIEYNVRLGDPE TQVVLPRIKNDFAMVIDAAVNHEKLPEIEENDNSILGVVVCSKGYPAHPAPNVKIGKLPE GTNTYIDYANVKGELDNLIGDGGRLFMVISEADNLVQAQDNVYSYLSKLDLPDCFYRHDI GNRALRD >gi|256541407|gb|ACPV01000067.1| GENE 4 6937 - 7818 1125 293 aa, chain - ## HITS:1 COG:TM0866 KEGG:ns NR:ns ## COG: TM0866 COG0330 # Protein_GI_number: 15643629 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Thermotoga maritima # 5 293 3 304 305 138 28.0 1e-32 MMARIIIGIIVVLVIVYVCCGFRIVPQNNEGLVETLGKYSKTVKAGFIFVWPLFQRIRKV PLALQPLEISKYSIITKDNAEISTSLTLNYLVTDSYRYFYNNTDSVESMVQLIRGHLRDI IGRMDLNAALGSTKEINDQLFTATGDLTDIYGIKVVRVNVDELLPSAEIQRAMDKQLTAD REKTAAIAKAEGEARTIEMTTKAKNDALVATAKANAEAVKTQADADAYRVQKMQEALSKA GEGYFRNQSLDSFNQLAQGPNNLIVVGKDEMTDLGKVPALKKVWDASDDKKDE >gi|256541407|gb|ACPV01000067.1| GENE 5 7836 - 8150 458 104 aa, chain - ## HITS:1 COG:no KEGG:lhv_1631 NR:ns ## KEGG: lhv_1631 # Name: not_defined # Def: putative DNA-damage-inducible protein # Organism: L.helveticus # Pathway: not_defined # 1 104 1 104 104 177 96.0 1e-43 MAEKTTGLYVRMNPEKKEKAEAILKKLGLNSATAINMFYDQIILHNGIPFRVEIPNAWDN LDQMNKYEYAKLLGERLNTLSGRKDLLGDVAKRLDAEKNEKKDN Prediction of potential genes in microbial genomes Time: Wed May 25 05:30:47 2011 Seq name: gi|256541406|gb|ACPV01000068.1| Lactobacillus crispatus 125-2-CHN cont1.68, whole genome shotgun sequence Length of sequence - 44705 bp Number of predicted genes - 49, with homology - 47 Number of transcription units - 31, operones - 11 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 22 - 83 14.0 1 1 Tu 1 . - CDS 105 - 1082 1152 ## lhv_1632 bacteriocin helveticin - Prom 1114 - 1173 4.6 2 2 Tu 1 . + CDS 1506 - 2345 831 ## lhv_1633 aminopeptidase N + Term 2353 - 2396 1.1 3 3 Op 1 . + CDS 2678 - 3151 162 ## COG2452 Predicted site-specific integrase-resolvase 4 3 Op 2 . + CDS 3126 - 3587 371 ## LBA1464 transposase 5 3 Op 3 . + CDS 3590 - 4030 376 ## LBA1487 transposase, IS605-tnpb - Term 4086 - 4129 0.1 6 4 Tu 1 . - CDS 4367 - 4552 71 ## + Prom 4396 - 4455 2.9 7 5 Tu 1 . + CDS 4485 - 5462 893 ## LCRIS_01538 surface protein + Prom 5464 - 5523 4.0 8 6 Tu 1 . + CDS 5570 - 6904 1337 ## COG0534 Na+-driven multidrug efflux pump - Term 6903 - 6937 2.0 9 7 Tu 1 . - CDS 6961 - 8274 1890 ## COG0773 UDP-N-acetylmuramate-alanine ligase - Prom 8308 - 8367 8.8 + Prom 8289 - 8348 5.9 10 8 Tu 1 . + CDS 8371 - 9669 900 ## lhv_1650 hypothetical protein + Term 9679 - 9713 1.1 - Term 9660 - 9708 10.4 11 9 Op 1 2/0.143 - CDS 9723 - 10370 989 ## COG0073 EMAP domain 12 9 Op 2 . - CDS 10390 - 10710 367 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 10731 - 10790 2.9 13 9 Op 3 . - CDS 10800 - 11201 251 ## LJ1801 hypothetical protein - Prom 11328 - 11387 9.4 - Term 11377 - 11427 6.9 14 10 Op 1 . - CDS 11431 - 12087 650 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 15 10 Op 2 7/0.000 - CDS 12097 - 13308 1056 ## COG4473 Predicted ABC-type exoprotein transport system, permease component 16 10 Op 3 . - CDS 13301 - 14044 250 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 14210 - 14269 4.2 + Prom 14031 - 14090 4.7 17 11 Op 1 . + CDS 14135 - 14566 594 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 18 11 Op 2 . + CDS 14576 - 14932 437 ## LCRIS_01549 tropomyosin + Prom 14956 - 15015 6.2 19 12 Tu 1 . + CDS 15051 - 15947 1272 ## COG0760 Parvulin-like peptidyl-prolyl isomerase + Term 15975 - 16005 0.0 - Term 15960 - 15995 3.4 20 13 Tu 1 . - CDS 16055 - 16492 477 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase - Term 16569 - 16615 9.5 21 14 Tu 1 . - CDS 16625 - 18106 1694 ## LCRIS_01553 putative protein without homology - Prom 18173 - 18232 8.4 - Term 18334 - 18388 10.8 22 15 Op 1 . - CDS 18467 - 19246 694 ## LCABL_13490 hypothetical protein 23 15 Op 2 . - CDS 19271 - 19756 318 ## gi|227878119|ref|ZP_03996099.1| hypothetical protein HMPREF0506_1100 - Prom 19791 - 19850 6.5 - Term 19822 - 19868 7.4 24 16 Op 1 3/0.143 - CDS 19873 - 20850 916 ## COG3481 Predicted HD-superfamily hydrolase 25 16 Op 2 5/0.143 - CDS 20843 - 23338 1860 ## COG4717 Uncharacterized conserved protein 26 16 Op 3 . - CDS 23319 - 24536 1070 ## COG0420 DNA repair exonuclease 27 16 Op 4 . - CDS 24545 - 24895 592 ## LCRIS_01557 UPF0342 protein 28 16 Op 5 . - CDS 24912 - 26969 2250 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 26993 - 27052 4.5 + Prom 26793 - 26852 7.0 29 17 Tu 1 . + CDS 27057 - 27914 1209 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit + Term 27921 - 27959 2.1 - Term 27907 - 27948 8.1 30 18 Op 1 . - CDS 27969 - 30341 1867 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase 31 18 Op 2 . - CDS 30358 - 30963 377 ## COG0406 Fructose-2,6-bisphosphatase - Prom 31005 - 31064 14.1 + Prom 31190 - 31249 8.0 32 19 Tu 1 . + CDS 31395 - 32126 885 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) + Term 32153 - 32202 6.8 - Term 32248 - 32277 0.5 33 20 Tu 1 . - CDS 32285 - 33103 888 ## COG1767 Triphosphoribosyl-dephospho-CoA synthetase - Prom 33127 - 33186 7.6 + Prom 32894 - 32953 5.5 34 21 Tu 1 . + CDS 33200 - 34309 694 ## LCRIS_01574 integral membrane protein 35 22 Tu 1 . - CDS 34306 - 35403 880 ## LJ0704 hypothetical protein - Prom 35565 - 35624 6.9 - Term 35597 - 35626 -0.2 36 23 Tu 1 . - CDS 35776 - 35970 243 ## LCRIS_01609 permease of the major facilitator superfamily - Prom 35998 - 36057 4.0 + Prom 35810 - 35869 2.3 37 24 Tu 1 . + CDS 35936 - 36124 95 ## - Term 36001 - 36048 -0.8 38 25 Tu 1 . - CDS 36133 - 36369 87 ## LCRIS_01609 permease of the major facilitator superfamily - Prom 36395 - 36454 1.7 - Term 36472 - 36514 4.5 39 26 Tu 1 . - CDS 36669 - 38000 1289 ## COG0675 Transposase and inactivated derivatives - Prom 38028 - 38087 10.4 - Term 38070 - 38099 2.1 40 27 Tu 1 . - CDS 38121 - 38624 544 ## COG0477 Permeases of the major facilitator superfamily - Prom 38721 - 38780 6.7 - Term 38749 - 38791 6.4 41 28 Op 1 . - CDS 38797 - 39351 414 ## gi|256843699|ref|ZP_05549187.1| conserved hypothetical protein - Term 39361 - 39399 5.1 42 28 Op 2 . - CDS 39418 - 39633 223 ## LCRIS_01612 hypothetical protein - Prom 39744 - 39803 9.0 43 29 Op 1 . - CDS 39834 - 40028 110 ## gi|227878096|ref|ZP_03996079.1| hypothetical protein HMPREF0506_1080 44 29 Op 2 . - CDS 40025 - 40711 597 ## gi|256843702|ref|ZP_05549190.1| predicted protein - Prom 40768 - 40827 2.8 45 30 Op 1 . - CDS 40836 - 41492 496 ## LCRIS_01612 hypothetical protein - Prom 41512 - 41571 4.4 46 30 Op 2 . - CDS 41578 - 41901 374 ## LCRIS_01613 putative protein without homology 47 30 Op 3 . - CDS 41935 - 42558 465 ## LCRIS_01614 putative protein without homology - Prom 42709 - 42768 8.7 48 31 Op 1 9/0.000 - CDS 42780 - 43559 598 ## COG3279 Response regulator of the LytR/AlgR family 49 31 Op 2 . - CDS 43556 - 44515 674 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain - Prom 44623 - 44682 7.3 Predicted protein(s) >gi|256541406|gb|ACPV01000068.1| GENE 1 105 - 1082 1152 325 aa, chain - ## HITS:1 COG:no KEGG:lhv_1632 NR:ns ## KEGG: lhv_1632 # Name: not_defined # Def: bacteriocin helveticin # Organism: L.helveticus # Pathway: not_defined # 1 325 1 325 325 640 99.0 0 MVKSITPHLVYHLNGMHHVVAQVGVVNGDHVFALQLLHSAHDVLVYRKHEGLTKNIDYTD PHLVMMGFGHTQTWVPANDKDEYFVGAKPNSGNWTTQIARVKYPRLLPERYTSNTQLPRL SHLNHVTDVPYDGHDHLHRVEASVSPNGKYFMIASIWDDGSGHFGLFDLNEVNQKLNENG TKNTPITDLHCLSAFHIDNFDNPSVAPDEEMLQMIDSVQGYAIDDDKNIYISNQLSPKIN HETGEVTTWSRKIVKFPWGETNSDNWQVAMVDGIDLPDRYSEMESIHVNAANDIYLTVAY HQKYIKGGEYKLRTLENQIFHITDL >gi|256541406|gb|ACPV01000068.1| GENE 2 1506 - 2345 831 279 aa, chain + ## HITS:1 COG:no KEGG:lhv_1633 NR:ns ## KEGG: lhv_1633 # Name: not_defined # Def: aminopeptidase N # Organism: L.helveticus # Pathway: not_defined # 1 279 226 504 504 524 97.0 1e-147 MREFAIAASNKFKVDHAYANGVRINDYYLASKNSKQYNKLALMTAQDSFHIFTKKIGKYP YKEIDITKGLLGKDTCGMEYPGLIMIDASGFLQKKHPLDRYNELTEDVSHEVGHQWFYGT VGSDEYMEPWLDEGLTNLLENGVYDLTYTKNKAYCAKLMHSKFYTRKNVKRANKILKENA NQFINKNQKANYINYPVNNPPKGVDTEDMAYELGMDFPAVLKVAMGETKFFDALHDYYQT YYLKQATAQDFLNIIRKYDNSKKVNNVINKFIDPKYLSE >gi|256541406|gb|ACPV01000068.1| GENE 3 2678 - 3151 162 157 aa, chain + ## HITS:1 COG:SSO1760 KEGG:ns NR:ns ## COG: SSO1760 COG2452 # Protein_GI_number: 15898559 # Func_class: L Replication, recombination and repair # Function: Predicted site-specific integrase-resolvase # Organism: Sulfolobus solfataricus # 10 140 54 180 194 120 45.0 1e-27 MSKNNLSSNKKQVAYARVSTYGQKDDLKDQLSHIRQYANAQGIVLDEEISDIGSGLNYKR QKWNNLLDEVMNNKIDKIYITYKDRFIRFGYDWFENLCKKHGTEIIVLNNIDTSPDKELV DDLISIIHVFSCRLYGLRKYNKKIRGEYLNDDQDTSS >gi|256541406|gb|ACPV01000068.1| GENE 4 3126 - 3587 371 153 aa, chain + ## HITS:1 COG:no KEGG:LBA1464 NR:ns ## KEGG: LBA1464 # Name: not_defined # Def: transposase # Organism: L.acidophilus # Pathway: not_defined # 3 153 2 152 385 289 96.0 2e-77 MTIKTQVVKLKVNKTMQKHLDALCDYRRYCWNKGLETWQLMYEAHTLNQKDNPSPNERRV RDELVANKADWQYDLSARCLQLAIKDLANAWKNFFDKSQPDWGIPSFKSKKAPRQGFKTD RAKIVNGKLRLDRPRSISKEPWFDLKSYEAMKL >gi|256541406|gb|ACPV01000068.1| GENE 5 3590 - 4030 376 146 aa, chain + ## HITS:1 COG:no KEGG:LBA1487 NR:ns ## KEGG: LBA1487 # Name: not_defined # Def: transposase, IS605-tnpb # Organism: L.acidophilus # Pathway: not_defined # 1 146 152 297 385 245 89.0 4e-64 MDEVKVVSVFKEKDNYYAALPYEEEIELKAKTQQKTAVDVNVGHFNYTEGQINILPAKLQ KLYKRIKHYQRMLARKREVNGKLATKSNNYFAVRTKLQRDYRKAANIQNDLLQKFTTKLV NNYDQIVIEDLAVKEMMMTHVASKGM >gi|256541406|gb|ACPV01000068.1| GENE 6 4367 - 4552 71 61 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAAAGATLINKAAAIVANFLVVIFCLLYKTWKYVEEYEFPTYQKDIFFLSLFHLLSSSLV F >gi|256541406|gb|ACPV01000068.1| GENE 7 4485 - 5462 893 325 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01538 NR:ns ## KEGG: LCRIS_01538 # Name: not_defined # Def: surface protein # Organism: L.crispatus # Pathway: not_defined # 1 325 1 325 325 517 96.0 1e-145 MTTKKLATIAAALLISVAPAAAIINQPVHTVQAATQSQKGKVTLKKSFNGTVQVFNSKGN ATTTTQKVNGKKMTVASTVKSGSSFKYYGKPILIQGKKVDAKTSKNYHYTTASYVNIGKK RYIKSLNVSSMDGQNVLILSSNSRIYDKNGHRTTFNGMSLIPKYMLVKTPAKIHATTKND VFFYFANLSGSKKRSLNTTTIKGKPFYALGNGAYIYASNVGFVNGNTLYQASSTTTATIL NKIHVLNNKLKSTSKLLKIGQKVKVDATKTTGKGDSAALYFRIAGTKGKNAQYIYWGDDA EYGMDQESTTDEFQGNFNLDNHLTN >gi|256541406|gb|ACPV01000068.1| GENE 8 5570 - 6904 1337 444 aa, chain + ## HITS:1 COG:MA1121 KEGG:ns NR:ns ## COG: MA1121 COG0534 # Protein_GI_number: 20089987 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Methanosarcina acetivorans str.C2A # 3 431 13 445 475 201 31.0 2e-51 MDELFAKAPIKKVYFKLALPVVLGMITTMIYNLADTMFVAKTGDTNLVAGITIGAPLFTF LIAVSDIFGLGGSSLISRLFGERNYQLSKRVSSFCMIGGFVTGLILTAILLILENPILHL LGAKAATYQDAADFYRVISIGAAPIIFSIIPQNLIRTEGLATQAMVATMTGTILAIILDP IFLFVFKMGAIGVGIANVTGYLVTDAILIYYVLYKTDYIKLKLKYSKISGKTIKDIVAIG IPGSITNFAQSFGMALLNSSLALYGANKVAAMGITQKIYSIVILVIVGFAFGSQPLIGYN YGAKNWKRLKKILNFDILVQIVYAVISGGLLILFARPVTALFMNQPDIINAGSYMLIATI ITTPIVGIILVYTTVFQSVGNAWAAFIMAIVRQGVVYFIALEIMKDVFGYHGIVWAQAVS DVITCIIGYFIYEKSMDLKDKIKD >gi|256541406|gb|ACPV01000068.1| GENE 9 6961 - 8274 1890 437 aa, chain - ## HITS:1 COG:BH3248 KEGG:ns NR:ns ## COG: BH3248 COG0773 # Protein_GI_number: 15615810 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Bacillus halodurans # 10 437 6 431 433 445 51.0 1e-125 MLDKNKQIWFIGIKGTGMASLALLLHDLGYDVAGSDIEKYTFTQVPLENVGIDVKNFNPD NIKSNDEQVIVKGNAFKEDNPEVKACLDKDVKWQSYPDTVEEIVQMHTSIGISGTHGKTS TTSLLSHVLGEVAPTSYLIGDGRGKGVADSRFFVYEADEYRRHFLAYHPDYQIMTNIDFD HPDYFKDQADYTSAFQSAADQTKKALFVWGDDKRLQSLKTDIPKYTYGFNDTDDFQATQI QKSTTGSKFHVLAHGKDLGEFEIHLFGDHSILNSTAVIAVAYTEKVPMDDIREGMLTFKG AKRRFSEKDFGDIAVIDDYAHHPTEMRATIQAARQKFPDKKLVVVFQPHTFSRTKKYQKD FEEILRDVDKAYVTPIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTKNKNSVIVF MGAGDIPKYEDAFEKLL >gi|256541406|gb|ACPV01000068.1| GENE 10 8371 - 9669 900 432 aa, chain + ## HITS:1 COG:no KEGG:lhv_1650 NR:ns ## KEGG: lhv_1650 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 432 11 445 445 648 76.0 0 MKFDKFSPVTGNDLTIIQGQSRYGVDCQDSAIDIYDLTTEKYWQKHPFPGNQLVFFDFQT GQKFEPISSKENQFFFSVIYQYGYFYFLHALLKQDQLTLFKYLPGQEPEIIHQMPLTGLH TYNLSLVYDKAHVWIASFDDNIDFYYPQKSSVVNEPDQTLLFINDTKLYFEQDSDFYSDN DYEHVPDRIIIKDFDDNILSDMQGNIILLSNDSFILPYWCDQRPLAGQDQYWVTISDYVQ FEDLRDDYWQTRIYPGNRLIFFDQKIGKAFSPFSVQPNVCYGEPIFNDGFFYFTQVNTKS NELHIFKYQPEKEAKIIFTCSLNAVNLHNLRLISSDDSVQLVSDNDQGTDTKGCTVKGYF PDKFAITYTEDQIPLFMKNHQLYLSDYEERYNGNGDFIKYVYYTCSKDLDNRLISKELGL YTLAPNGKWWLS >gi|256541406|gb|ACPV01000068.1| GENE 11 9723 - 10370 989 215 aa, chain - ## HITS:1 COG:L195751 KEGG:ns NR:ns ## COG: L195751 COG0073 # Protein_GI_number: 15672372 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Lactococcus lactis # 1 200 1 201 208 162 45.0 5e-40 MITSTNKEAYPNTLIVILGHDEGRSSFEEKEDVTRVTNDEGKTIGYNFFNVDKLVDFDKL PNGPVKLSDDELVALNKKLDEVGFTDKLAYGKPTLVYGYVKTCEPHPDSDHLHVTTVEVA DGEEHQIVCGAPNIAQGQKVVVALPGTLMPNGAQIWPGELRGVDSYGMICSARELGLPHA PQKRGIMVVPDSFEVGAEFEPTKCDELIASGEITL >gi|256541406|gb|ACPV01000068.1| GENE 12 10390 - 10710 367 106 aa, chain - ## HITS:1 COG:lin1650 KEGG:ns NR:ns ## COG: lin1650 COG0526 # Protein_GI_number: 16800718 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 10 105 8 103 103 107 53.0 5e-24 MEKIKELTEDQLKEITKEGRTVLEFSADWCPDCKFLAPFMPEIEKDFSDAKFYEIDRDGS IDIAKKLMIMGIPSFVVYQDGKEIGRLVNKDRKTKDEVENFLRSLD >gi|256541406|gb|ACPV01000068.1| GENE 13 10800 - 11201 251 133 aa, chain - ## HITS:1 COG:no KEGG:LJ1801 NR:ns ## KEGG: LJ1801 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 129 30 160 162 105 45.0 6e-22 MFTAPFKWNARSTRRGFWYAYVWAIILLVILAACSATAYSIDGIAYSSNEFFLLTHVSTG TLIIQIIIYLLIIWILLGLLGFTIRRLHDTDHTGWWYWISVIPFGYLFLLYFMVLPTVEK PVRWGSYLFKEKK >gi|256541406|gb|ACPV01000068.1| GENE 14 11431 - 12087 650 218 aa, chain - ## HITS:1 COG:L156302 KEGG:ns NR:ns ## COG: L156302 COG0220 # Protein_GI_number: 15672731 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Lactococcus lactis # 1 215 1 213 217 213 49.0 3e-55 MRLRNKPWAVKLVNDHPESVLQNPDPEKRIDWTERFGNDHPIEIEVGSGKGHFITTLAEQ NPDKNYVALELQTTAAGIILRTKLEKGLDNLQILRGDAADINCFFPANSTNVIYLNFSDP WPKTRHEKRRLTYKSFLSKYEQVLKPEGHIEFKTDNAGLYAYSVQSLNNYGMKFDFVSVD LHHEKPEIVEKNIETEYEHKFAAKGNPIYALHAHFEDE >gi|256541406|gb|ACPV01000068.1| GENE 15 12097 - 13308 1056 403 aa, chain - ## HITS:1 COG:lin2317 KEGG:ns NR:ns ## COG: lin2317 COG4473 # Protein_GI_number: 16801381 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Listeria innocua # 2 395 8 405 407 144 30.0 4e-34 MRELANRRLSENLKQSVKYLTLVFNDFFILALIFLFGALMFWYAQAMRVIPNNLWFYKPL VGFIMWLPLLAGRLVTLLKEADMQFLFTQDEQMGEYLKPMIRYSMVLPTILIVLLGGILF PFATVKAGIPVWSYVILIISTVLLKLCMLLIEKESLYFYYNYPQWILLVVTLAALLIGSL GSFIYPIEVVVLMVITHFGTKKEKGVFNWRYAIKTEQARKDRVYSIFSMFTDVAEKQVTI KRRRYLDFLLPKSLAKENPNLFLYRRSLLRNPEYLNLLVRMTVFAILVSWLVQDWRWALG LSCLVIFLTVYQLLPMATEFDRNFMYRVYPIERQNRGRDLVKVLTMGLFIQWLLISVCWL IVLPINVNLFEAMAILLGFTMIVTATYLPGRVKKMNQKNFGIR >gi|256541406|gb|ACPV01000068.1| GENE 16 13301 - 14044 250 247 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 237 2 239 245 100 29 1e-20 MTLKIEHLTGGYTGVPVIKDINLEIKPGEALGLIGLNGAGKSTTIKHILGLLRPQKGKIS LNDVVLTQQPTKFKREVAYIPETPILYPELTLKEHLELTMLSYHLDENKAWKRAHELLKM FRLDDKLEWLPIHFSKGMRQKVMIVSAFLADTSLLVIDEPFTGLDPLAVANLIDLIKKAI ADKKMVLMTTHVLADAQQAISNYAVLNRGTIEVVGSLQEIRQHYGLKPDDPFDKLYLALN REDNGNA >gi|256541406|gb|ACPV01000068.1| GENE 17 14135 - 14566 594 143 aa, chain + ## HITS:1 COG:lin2319 KEGG:ns NR:ns ## COG: lin2319 COG0537 # Protein_GI_number: 16801383 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Listeria innocua # 7 142 3 138 140 136 48.0 1e-32 MENLDKDCLFCKIIRGEIPSYTVFENDDVKAFLDISQVNPGHTLMVPKKHIVNLFDYTKE DAQRYLQYIPEIANAIKAAFPNVTAMNITTNNGKAANQVVMHSHIHFIPRFEGDGLKLMT RNNADKYDEAKYNEVANKIKAQF >gi|256541406|gb|ACPV01000068.1| GENE 18 14576 - 14932 437 118 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01549 NR:ns ## KEGG: LCRIS_01549 # Name: not_defined # Def: tropomyosin # Organism: L.crispatus # Pathway: not_defined # 1 118 1 118 118 207 100.0 1e-52 MKHFLLGTVFGATAGLVFSCMKDSNGNRPGKPLKDEFEAIKHESQRFNSALQKAKKASQE LNEQMPTAERTISDINDSVEHYSDHIQPIVNRIEKKSDKLNQDLENIVPDTNSQDTKN >gi|256541406|gb|ACPV01000068.1| GENE 19 15051 - 15947 1272 298 aa, chain + ## HITS:1 COG:lin2322 KEGG:ns NR:ns ## COG: lin2322 COG0760 # Protein_GI_number: 16801386 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Listeria innocua # 6 293 3 281 291 140 37.0 3e-33 MKSYMKKIAAVVAVAGVALSTAACSNSGTKATVASYKGGKITQEQYYDEMKKSQAGKSTL ANMIINRALEQQYGKYVSQKKVDKQYNNYKKQYGSQFSAVLQQNGMTASSFKQNIKTNLL SEQALKHIKKVTKKQEQQAWKSYQPKVTVQHILVAKKSTAQSIIKQLKDGKSFKVLAKKY SLDTATKNKAGKLPSFDSTDTTLDSSFKTAAFKLKTGEVTSTPVKSQSGYHVIKMISHPA KGKFADHKKAIDDQIYASMAQDQATMKDVIATVLKKADVSIKDSDLKDVLSSYVSTTK >gi|256541406|gb|ACPV01000068.1| GENE 20 16055 - 16492 477 145 aa, chain - ## HITS:1 COG:L0022 KEGG:ns NR:ns ## COG: L0022 COG0800 # Protein_GI_number: 15673608 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Lactococcus lactis # 1 129 82 210 213 134 51.0 4e-32 MAIVSGARFVVSPSFNENTAKECNLYAVPYMPGCFSPTEIQSALTYGADVVKIFPGSIAG KGIISEIHGPFPYVNVMPSGGVSLGNMHEWFASGAYVVGVGGGLVGPAKNDDYKAVLHNA QAFHNEFQSIIYANSAATRKVPVRA >gi|256541406|gb|ACPV01000068.1| GENE 21 16625 - 18106 1694 493 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01553 NR:ns ## KEGG: LCRIS_01553 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 493 1 492 492 839 95.0 0 MKASKKLILVSAATIMLTVPVLANNHLSNPVVAASQDNTQTTKLTFYINHNAYVYNHQGK RTKSKIKKGKLLKVTILKPKAITNPNQSRYFFNNVLAGKYFSLPTVSIKKTDFVNIGKNK YIKPGNIGRISPGKYQYADLSTKEIKVITKKTAPVTNQIGMPIAAPIKKGTKLTVDQNYY HNVDGADDYLSSLEYYRIKGTDKWVNLPDIKKSTRIMPNNFALAASTEDNYVIAGNSTYL YNIDGEIVDKSYLLITDVNVGVDRALYIWNKQTKQADLYYHLTANKKLVWVPALDGTGKT GTTITSNGSYAHQTKDTANTFVKASDVTSQNPVALKVDNTPSEAQADATQATASDYGELQ ALVDRAGQIKKSTLYRLTEKAQQERYDLAVDNAQKLLTNKNTSIAAVKQASWQIKYDQSK LDGQKVWVKNMNKLTKAEKSWVVSLANCDIHGDLQKEYAGFYKGKIAVVTYNKKTFKSEL VRYLKLSDYATDK >gi|256541406|gb|ACPV01000068.1| GENE 22 18467 - 19246 694 259 aa, chain - ## HITS:1 COG:no KEGG:LCABL_13490 NR:ns ## KEGG: LCABL_13490 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 258 3 259 259 170 35.0 5e-41 MFDVEKMKKIYFDWIDKKIQFVPSKNQDYMTITTPFLDMYNDYIELVIAQGNTSKYIISD DGYTINELGLLDINLNRKSKRRDYFQSILINFGVKNQNNELVIEFDDLAQFPDAQNRLTQ CMLQAFDLLQTSKNSVIKYFKEDVTNYFIDNNIPVGEDLSLLGKSGRNSKFDIVVGRTRK KPQQAIKVVNTPINSNIANPLFRIIDVRESQPKTEFSVIANNINSPVSSDFKSAFKNYNI PVYSWSEREQWLSKFKLAM >gi|256541406|gb|ACPV01000068.1| GENE 23 19271 - 19756 318 161 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878119|ref|ZP_03996099.1| ## NR: gi|227878119|ref|ZP_03996099.1| hypothetical protein HMPREF0506_1100 [Lactobacillus crispatus JV-V01] # 1 161 1 161 161 308 100.0 8e-83 MDIAEITKMIEAVKQIIEKNDYIDLPLFQNSSQLRLKGNNYNFILDLNRKGHRRPKCTFL LREKRNKEQPLVRVDIIGRPHQNPVGDFKWSNKVIPCPHLHRADFPKYGTYVAVPLLEKN ENFQLSQNDLNNLCECLKKTLKFLNVDNINSYNFREQESLF >gi|256541406|gb|ACPV01000068.1| GENE 24 19873 - 20850 916 325 aa, chain - ## HITS:1 COG:lin2323 KEGG:ns NR:ns ## COG: lin2323 COG3481 # Protein_GI_number: 16801387 # Func_class: R General function prediction only # Function: Predicted HD-superfamily hydrolase # Organism: Listeria innocua # 1 312 1 310 313 263 41.0 3e-70 MLKRLLDYNDGEEMDIVVLIRNSQLRHNKKNKLFLAMQFSDGSGEIRGNYWDANNQDAAT FSTGTIVELNGKREEYQGRPQIRIYSLRVVGPQEGYELDQFIKSAPEPVNEMEAEINKFV MQIDNPTWTKIVKYLLQKWHDRFYDHPAGKSNHHAVRGGLAFHTLSMLKDAKGLADNYEQ VNRSLLYAGCILHDMGKVLELSGSAATQYTTEGNLVGHLVLIDEQIMLAAQDMKMNLESE DLLLLRHMVLSHHGRFEYGSPKLPALLEAELLHRIDDLDAAIYAVTNALQHTPKGEFTEP LLSQDGKRYYRPMHDSALDNAKHLE >gi|256541406|gb|ACPV01000068.1| GENE 25 20843 - 23338 1860 831 aa, chain - ## HITS:1 COG:lin2324 KEGG:ns NR:ns ## COG: lin2324 COG4717 # Protein_GI_number: 16801388 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 811 1 894 908 141 23.0 4e-33 MRLKQIKIINFGQFSNKTFDLPSDQINVFFGANEAGKSTTVAFIKQILFGFHLRSNSSPF FEDYTPLAHVSPMGGNLVFTAADGEYELERLYAKGDKTKKGILTVKKDGQVVPESVFFDQ IQNIDGSFYADSFIFNQEMLGQVNSLSQEDLLERIYYLGAADSSKLLEMRDDFAKEAGKL FKKTGKKPEVNRLLKEMTDQRDKLAQTKNEFNDYEQLHQDFVQKRAALNRQKQDLAVLQK QEQDLHDLQKEMGNYQTLLDLQKQVKDVDFNGQNYQKAQDIMAQGRNLQKTIQSVEAQLQ DLGENDQSDFTLENKLIQQKPQLLQWQAEYRNCLQKADQLKQEKEQLLALTPELKNLLKL TPEQIEQMQADYQALPGAVNEPAYVTTNDKLWYVIGAVLAALGVVLLVALGTVGVIALIT GLIFLAAGYLKNSNQNKQNAAVLEKQKLVAQKRQAFQTKYGLNPDTLNLNSLLTNLNQYQ IKESAAQTNNKQVTVLNQNVAQLASSVQNALKQPIDNDFSQVLNGLDELETRISEKQELF QRKSSLTASLKQDKQDLKELGLKLQALFAQANVENMAGYDQLYQDSLNQAKLKTQIAALK ESLGDDLQQLQMQTNSTELADKLTALTEQISTKNAEINELQSQVAQLQVQLDNLADSTAV FKAKQDLANTETNFVQSSKEYLANLFAARWISRSLDLASNERFPKMLKAAQEYLALLTGG RYVGINLDKKLTVVRSDGKKREVKYLSRGTAEQLYFALKLAFIEQIKDQINLPILIDDSF VNFDDQRVSYIDQLLQKISENNQVLIFTAQKNLVDQLGIEPLTFTKGTQDA >gi|256541406|gb|ACPV01000068.1| GENE 26 23319 - 24536 1070 405 aa, chain - ## HITS:1 COG:lin2325 KEGG:ns NR:ns ## COG: lin2325 COG0420 # Protein_GI_number: 16801389 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Listeria innocua # 1 260 4 260 411 198 41.0 1e-50 MKFIHFADAHLDSPFRGLSFLPSEEFNHIYQAADQSLKRIVDLALAEKVDLVLIAGDTFD SSQPSPRAQLFFAEQVKRLTDAQIQVVMIFGNHDHMKQEDLLVSPSPYFKLLGNSETVEQ ATFTTDAGFNYDVIGFSYLNNHITEDKIPEFPAKGKNYTFGLMHAQEKSATASQNVYAPF TVDELQNLNYDYFALGHIHARNNLSSTPWIVYPGNIQGRHINEMGAKGCYLGEIDGNSGK TTIDFKETGPILWQGTKINLEGAISKADLQAKIIAKLESGQKTYFSLTIAGAQYLSAEER DLVQDPDFWQTISQSLPFASQLVDVRFVVNTSLKLNDNDQQAFQAAKEELFAPAEFKQIV SDWQKKDPEAAKLAADPDFIAAVKNLTEVKLMSKLKGIKDETETN >gi|256541406|gb|ACPV01000068.1| GENE 27 24545 - 24895 592 116 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01557 NR:ns ## KEGG: LCRIS_01557 # Name: not_defined # Def: UPF0342 protein # Organism: L.crispatus # Pathway: not_defined # 1 116 1 116 116 155 100.0 6e-37 MVNIYDAANKLAEDLTQTDQYKKLQEAIKAVEDDKDASALFKKMDELQNKIMQAQQAGQP LSAEDQQAYKDLNDQVQKNDKIVSLLTNEQGLYDLLGEVQKAYTKPINDLYEDLRN >gi|256541406|gb|ACPV01000068.1| GENE 28 24912 - 26969 2250 685 aa, chain - ## HITS:1 COG:lin2331 KEGG:ns NR:ns ## COG: lin2331 COG0744 # Protein_GI_number: 16801394 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Listeria innocua # 15 685 27 700 714 592 47.0 1e-169 MNNDQPRRGGFKDAWHRFDSRFFIGRWIILILLTLMLLTCTYYTIKVKTSNIANLKASLS TTTTIYDYKGKKAGSLYSQKGSFVEYDQISPNIQNAVISTEDRTFWKNPGFSIKGMARAT LSLVIHHGQVTGGGSTLTQQLAKNSLLTQQQTFSRKLEELFFAIEINHVYSKKDILTMYL NNAYFGNGVWGVQDASRRYFGKNASELNPSEAATLAGILRNPSFYNPVDHMSNALARRNL ILNLMVDNNKLTAAQAKMYQKQGLTLRNTFQNKNGYRYPYFFDAVVDEAISKYGLTEEQV MNKGLKIYTTLNQNYQGKLQDTFEQSWLFPQNGSDGTESQGASVAMDPSTGAVRAIIGGR GKHVFRGYNRATQMKRQPGSSIKPLAVYAPALQNGYHYDSQLSNKLQKFGKNGYEPHNVD NGYSNTIPMYEALEQSKNVPAVWLLDKIGVSKGVQSVENFGIKVPKSDRNLALALGGLSS GVSPIQMARAYSAFANKGNLPNNSFFITKITDASGNVLAENNNPSSHRVISENTAKEMTT MMLGVFTNGTGRSAQPNGFRVAGKTGSTEVPNSYGFGTKDQWIVGYTPDIVLATWVGFDR TNKQHYMQGISETGITRLYKAEMEGILPYTAQTEFTEKAPNQIVKNNGSNDDWTNGLGEK IQDGLGSAGQKINEWYNSLKGLFGQ >gi|256541406|gb|ACPV01000068.1| GENE 29 27057 - 27914 1209 285 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 1 285 1 285 285 470 78 1e-132 MSFRFTLFYPENLAPASVNEVLRQLLIPRKWRHFLRIEQNILVNGNYRYFNQNILPGDKI EINLDHVESDQQAYAPSGKMPDVIYEDDNLLIINKKKGQKTHPNLNETNTALNDCTTYLG QSPYIVHRLDMLTGGLLLIAKNPAVVPILNRELTSKIFHRDYLAKVINADHLAERGTINA PIGHDPLDQRKRKIDPTGLRAVTHYQVLQKNDDNTAIVKLTLETGRTHQIRVHLASLGSP IVGDPLYNPDFASERLALDAYEISLVQPYSFTKLNVKLPKNKIEL >gi|256541406|gb|ACPV01000068.1| GENE 30 27969 - 30341 1867 790 aa, chain - ## HITS:1 COG:PAE2423 KEGG:ns NR:ns ## COG: PAE2423 COG0574 # Protein_GI_number: 18313335 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Pyrobaculum aerophilum # 6 773 3 778 811 712 47.0 0 MNRDNYILWFDQLHRDDVDLVGGKSSSLGELTSETNVPVPYGFATTAIAYRHFMNYSDLN QKIDKLLATLTDPEDSEQLHRICTKIRKLIIEAPMPNDLALEISCAYDSLAQKMHQNEPF VAVRSSATAEDLPDASFAGEQDTYLNIHGRENVLKKVQECYASLFTDRATYYRIKQNFPQ EKVALSAAIQMMAFSKAAGVMFTVNVATGDDTKVMIEASWGLGEYVVSGTVTPDNYVVDK NTMKIVHKMVTKKPIELIRLPSGGTIEQKVAPDQVNEPALTDAQIIELAGYAKEIEKHYG CYMDMEWSLDQNDKLWLVQARPETVWSQKKKQEKTDAPQEATTEHQVLLKGLPASPGFVS GKVHIIDDPKDINEFKQGEVLVTLMTSPDWVPAMKKAAAIITNNGGMTCHAAIVSREMQI PCLVGTTSRGQAATKTLKNGETVTVDAKNGVVYAGVVKDAVKKVDEKPAEPAAVEYFPPT ATRVMMNLGDPDLAEKYASLPADGIGLMREEFLWTTYIHQHPLYLIETGHPERVVNELAN GIGKVARAMAPRPVVLRFSDFKSGEYRNLKGGDKYEPHEPADLLGWRGASRYYDPKYINA FKLELEAVKKVRDEFGLKNLHVMIPFCRTVDEARKVTEIMRTQGLVRSADFKVYMMAEIP ANIILADQFNQFIDGYSIGSNDLTMLLLGCDRNNDVIADLFDERNLAVKRAIRHLIKVAH QDGKTVSICGQAPSEYPEFTEFLVRSGIDFVSVNPDMVKATKLNVAHYEQRILLDHATGL GKKDPNEYNW >gi|256541406|gb|ACPV01000068.1| GENE 31 30358 - 30963 377 201 aa, chain - ## HITS:1 COG:lin1208 KEGG:ns NR:ns ## COG: lin1208 COG0406 # Protein_GI_number: 16800277 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 2 181 3 185 199 116 38.0 3e-26 MRTIYLVRHGQTLFNVHHKIQGTCDSPLTELGRAQATAVRQYFLQKEISFDAAFCSKQER ASDTLEIITDNQLSYTRLRDLHEKSHGEYEGQDEFMLPWRRGFSRINAAMEPDQHVEERM ERAITKIIDSTHANDTILIVGHGTALRLFTQRVNPTFKEYDNCGIVKMSAVDNNLKYLSY VAPAKDVVLNKAAKNEMLVVR >gi|256541406|gb|ACPV01000068.1| GENE 32 31395 - 32126 885 243 aa, chain + ## HITS:1 COG:CAC0770 KEGG:ns NR:ns ## COG: CAC0770 COG0580 # Protein_GI_number: 15894057 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Clostridium acetobutylicum # 1 243 1 237 242 215 45.0 5e-56 MEHTWLMKYFAEFFGTIILVVLGNGSVANSVLRDTGGNSRDGQANGGWLLIAFGFGFGVM LPAMLFGSISGNHLNPAVTLAQACSGVFPWDQVMPYILVQMLGAIVGQLILVAVYWPYIG RTTSDDAVFASFATGDSANSKFNGFITEFFGTAILLFIAVGLYRGMFFKQSEDIANIGVG FLITALVMAVGGPTGPALNPARDLGPRIVYALCPLPHKGSAHWDYSWVPVVAPIAGGICG ALL >gi|256541406|gb|ACPV01000068.1| GENE 33 32285 - 33103 888 272 aa, chain - ## HITS:1 COG:SPy1178 KEGG:ns NR:ns ## COG: SPy1178 COG1767 # Protein_GI_number: 15675150 # Func_class: H Coenzyme transport and metabolism # Function: Triphosphoribosyl-dephospho-CoA synthetase # Organism: Streptococcus pyogenes M1 GAS # 6 267 9 289 294 155 36.0 7e-38 MTVEKITQNALKALLYEVVTNPKPGLVDPVDVGSHLDMNVYLFIDSSLSLEKYFKQSAQI GIDFLRKDLRQMFNQLRQAGIEAEKAMFQATKNVNTHKGAIFSLGLFVCASAYCEKNGED EFTVIQAMTQGLVERDLGQKQETAGEKQFLQYGKGGVRAEAEAGYPLVRDVALPFLSQTT GDLNVRLLDTLMKIVSEIEDSNLIKRAGNIEVITWAHEQAKKYLDLGGYGTVDGKNFMQK LNLIFKEKNYSLGGSADLLIVTIFMALQRGVI >gi|256541406|gb|ACPV01000068.1| GENE 34 33200 - 34309 694 369 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01574 NR:ns ## KEGG: LCRIS_01574 # Name: not_defined # Def: integral membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 367 1 367 369 554 83.0 1e-156 MKKYQFKTYQIADIGDYLKVFACTAVMAQPIMAMIMGIGQPTHTQDIFGIFYNLVKYTAP AFIFGILYTTIRTNDEQGSFSYQKHMQSNWSNLFVPTIWWMLIYLLGMPWLQQVNYFHNF ASLCWQFINGNAAPHLWYNTMMLQFIILMPLFWWLSRYVDHDLKRGIWIAVLTFILYFAW LYFYDYYVFHGIHEHDWYLLDRIFISFFIYGVYGILAWQLRSYYNQLVTKYWWLIVFLFA VCFIWTNIELQKFGHPINFNNAPYYKPSMTLYCLAVIALVSAFCLHQVKKKSQTSLKVFH FLATYAYRAYLSNVFWNQLVWRGLNMQYHATFHPFLTFFGTWLLTWILSFTSAYFLHVWW LKTKNLVQH >gi|256541406|gb|ACPV01000068.1| GENE 35 34306 - 35403 880 365 aa, chain - ## HITS:1 COG:no KEGG:LJ0704 NR:ns ## KEGG: LJ0704 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 361 1 361 361 316 44.0 8e-85 MNPFDPNFGKVPKIYLGRQKIVEDIVRSLESGTGPYQTSMIYGMRGVGKTSLLADITSTL EKKNNWIVIYLAMTSDLLATLIQSIYQEAANPVKKALNNIDGVKFSAFGFELEIHVSNPQ STYQVLLEEMLKVLKSHGQSLLIAIDEVKETPEIVNLASIYQIMVLKKYPINIMMTGLPK NVSELQNNDVLTFLLRSGRVPLGPLDLFDIKYRYQKAFERGNKEIDNSTLMKMTKLTKGY AYAFQDLGYYVWQNSADKVTDQSIEKSISSFKNDLFRNAYTKIISELSPIDRKFLSIMAH NPKNIVNISDIRHQMKKSPNYVSQYRQRLIDSQVIVDAGYGKVAFSLPFMKDFLLEAEEL YEIDD >gi|256541406|gb|ACPV01000068.1| GENE 36 35776 - 35970 243 64 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01609 NR:ns ## KEGG: LCRIS_01609 # Name: not_defined # Def: permease of the major facilitator superfamily # Organism: L.crispatus # Pathway: not_defined # 1 64 164 227 274 103 93.0 2e-21 MNVLAPLSNLAIVLLYVLYYGGYGMCFGSLMTSGLITLGKASHAQGNAIFNTLQQFSGAL GTAL >gi|256541406|gb|ACPV01000068.1| GENE 37 35936 - 36124 95 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MARLLNGAKTFIKIKLVKLAIIPIIIGNRAPFLSSSLPAKAAINALITAPGKVTPPANET EP >gi|256541406|gb|ACPV01000068.1| GENE 38 36133 - 36369 87 78 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01609 NR:ns ## KEGG: LCRIS_01609 # Name: not_defined # Def: permease of the major facilitator superfamily # Organism: L.crispatus # Pathway: not_defined # 1 78 31 108 274 119 89.0 3e-26 MLGFTRIAKYSFFSIRVWGFLILGIISLLIWLKISWSDTAALISPQLFKNLRFSMQLIAY CFAKIATLALGFIFPIYV >gi|256541406|gb|ACPV01000068.1| GENE 39 36669 - 38000 1289 443 aa, chain - ## HITS:1 COG:DR0178 KEGG:ns NR:ns ## COG: DR0178 COG0675 # Protein_GI_number: 15805214 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Deinococcus radiodurans # 15 431 9 374 409 168 29.0 2e-41 MKRMSSLAYHFGLKVRFYPSSKQKKIIKLNYDAQRFVYNSYVGRNRNNYRAKGYLAVRQY QVMPFAFSVLNNYETKLAEEVVANNELLAKPKNIRDAYSFLRVKEIDSLAIANAIQNYQK AWNNYRKLGHGIPTFHKKRSDWSYQTNCQYPKQTEAFLDNGTARFIDAKHVKLPKLGVVR IASFRKLIKERLLNHISTRIGTVTIKKTADEQFYLSMQLGSDIAFVKALPKTQSQLGIDL NLDNFLTDSNGSMVANPCFYRKAKKKLARAQRVLSRRQRRAKKEGRNLRLAKNYQKQRLA VAKLHDKIRRQRNDFLQVLSTALIKNHDLVVAEELRSKNLLKNHALSQAISDVGWRSFLN MLAYKADLYGKEFKTIDPKYTTQRCHQCGSIMGQNGYKKLTLKDREWTCPICQTHHIRDW NAAVNILEKGLGNWQNSKIKKAA >gi|256541406|gb|ACPV01000068.1| GENE 40 38121 - 38624 544 167 aa, chain - ## HITS:1 COG:L184818 KEGG:ns NR:ns ## COG: L184818 COG0477 # Protein_GI_number: 15673330 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 158 18 175 454 150 51.0 7e-37 MLSFLGILDETATTVTFPTLIKEFSITTDQVQWVNTLVLLVIATIVPISSQIRLRISTKK IFILEVLLFTLGLIIDILSPRFDLLLLGRAMQGVGTGIGLPLMYNIILAEVPKEKLGFMM GIGTMITACAVALGPVFGGMITDALNWRWIFIISLFLMKNARKFPVF >gi|256541406|gb|ACPV01000068.1| GENE 41 38797 - 39351 414 184 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843699|ref|ZP_05549187.1| ## NR: gi|256843699|ref|ZP_05549187.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] # 1 184 1 184 184 306 100.0 4e-82 MHKKRLVISSIFVLLIIAGIGIIFFSKNYGQSNTVVRVQTVNINSKAKKIANYDVLANGK TRESHSTGDFSTAERIKVSPNIFDTYTKKNQTHLRLLKEVPLYNQKKHKVDDANYWKMIN SITKNVHADIYKLTLFKAHSSYYAYVQINQWILDAGTLYEYNPKSNILRKLCDFDGKEVI NISH >gi|256541406|gb|ACPV01000068.1| GENE 42 39418 - 39633 223 71 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01612 NR:ns ## KEGG: LCRIS_01612 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 71 143 213 213 116 98.0 2e-25 MQGVIKPLKRIANRLNTSLKKANNKRDFNAAMKAAKKLRGSQRDFVLRSLNQLKKDGSMN VEGKNLLLFGL >gi|256541406|gb|ACPV01000068.1| GENE 43 39834 - 40028 110 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878096|ref|ZP_03996079.1| ## NR: gi|227878096|ref|ZP_03996079.1| hypothetical protein HMPREF0506_1080 [Lactobacillus crispatus JV-V01] # 1 64 1 64 64 98 100.0 1e-19 MRGILTSRVARGILAFIFIFFTGWSAARLIVQIERSESIYDYLILGGFSLVLGILELYRL INSK >gi|256541406|gb|ACPV01000068.1| GENE 44 40025 - 40711 597 228 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843702|ref|ZP_05549190.1| ## NR: gi|256843702|ref|ZP_05549190.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 228 16 243 243 423 100.0 1e-117 MLLAAGEGIVPNTVNASMLDSAKSSQNSQESSRYTWQSVKLTDGTEMQILPDNSSKLAGK IKYNGQIYSYRIVSNNGVYTIYLNNEEVYSVDINNSQLPTTSVGGFDPFINFTYANGKVA FKHAGRKYYYLTTEKYSADTVRRLKGTTKDIIIGLLGFVPVVGPYVSAGGFAYTVYNDIF GKNPKNKWYTIKEYCTRGYEYYAWKTYTYTDSHRKHLQSVKWEYKKVL >gi|256541406|gb|ACPV01000068.1| GENE 45 40836 - 41492 496 218 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01612 NR:ns ## KEGG: LCRIS_01612 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 218 1 213 213 162 48.0 8e-39 MKFQKLVTSALLVASTTGVLMTAPKRVQAVADTNTTESGKPVANIVNKPNLTKQGYVLTI QAPSGKIYVGQKNYKKQLTTTKPISNAKSVSWKKIKNVRFRIEKVAYATKVIKFGGAPQY LLVSKDKKYSCWTTRYSIKYYFWNTKKMQQVIKPLSKLTTRNSSSLKKIRNKQDFNQAVL AAKRLPANQRKVVLESLNQVKKVGNIDKAEDNILLFSF >gi|256541406|gb|ACPV01000068.1| GENE 46 41578 - 41901 374 107 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01613 NR:ns ## KEGG: LCRIS_01613 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 107 1 107 107 204 100.0 1e-51 MFGKKKDQDSELSPDIMDFKNALEEVRFTPEVEHDVELIKMFDEAIDKAEKGEAVQTIYA RLSYQITQYIQTHHFRAPKPVSEFIHGSTGSVTTGLTSIPVSWNTVH >gi|256541406|gb|ACPV01000068.1| GENE 47 41935 - 42558 465 207 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01614 NR:ns ## KEGG: LCRIS_01614 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 207 1 207 207 388 100.0 1e-107 MKIFNKKNLLLSSAVVAGMLLVSDVNSATFTVYAAEQQSSVGQASQAVKAGNSLTQEQIQ QANKYIKIENNQYMLDTSNKSCTLSPETIHKIQEALTLFNKTVRENNVVLLSNEDVENNN LDQEVSPFITFVKGKKRKHRKSHGYIVGYGSNGYCYKDSKGNFHYYVTKSPLQTVLDVNR QGLESALGGGWVQAPENAHWHGFEYHR >gi|256541406|gb|ACPV01000068.1| GENE 48 42780 - 43559 598 259 aa, chain - ## HITS:1 COG:lin0044 KEGG:ns NR:ns ## COG: lin0044 COG3279 # Protein_GI_number: 16799123 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Listeria innocua # 4 250 3 240 242 98 31.0 1e-20 MKYPVFICDDDQMQVNDIVKMIGKAEEILSDEHAIEFDVAFTTTFADAKKFLKDNIYTGG VYLLDIELGKEIGQNNGFDLAELIKNQDKRAQIIFITTHADLSLISFERRLGPVDYIVKP RNKEDYDRFKQRLVATLEISISNIENFDYTEKLTFHYKVGRQVRNIDIDDIIYISTTKTP HKLVMVNVRGENQFFGSINQYAKESAALVKISQSCLANPKNIKLIDLPKYKVTFVNGDTV DFSQSAYKRMQHLYDKIQS >gi|256541406|gb|ACPV01000068.1| GENE 49 43556 - 44515 674 319 aa, chain - ## HITS:1 COG:CAC0080 KEGG:ns NR:ns ## COG: CAC0080 COG2972 # Protein_GI_number: 15893376 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Clostridium acetobutylicum # 75 318 214 444 447 75 28.0 2e-13 MYVSIELVNYYLSSDRRAVEVIQISLGLLVLQTFFAILVYAGMVNIQKDLLTRQEQEQQK LQLKLTETKRENTEIRNRELALKEQQLQIENAQLKEYSNYLDKNEDELRHFKHDYENLLN SLKISAEKGDSESVVKQLAEYTDSQIDEKALRKYKGVNHIHVEELKSIVITKLAKLYNEE IPYSFGCDVEIYNIPKSVNIFDIVRIIGITFDNAIEESQSLIKQTGNTDSAKVDAMYYQE DGNFEFRIRNRIAADTSLAFDILSKDGYSTKKHHTGIGLDNVKQIELKYEEYMLVNYGIE NGWFNFELEIMPDNEGGIE Prediction of potential genes in microbial genomes Time: Wed May 25 05:32:29 2011 Seq name: gi|256541405|gb|ACPV01000069.1| Lactobacillus crispatus 125-2-CHN cont1.69, whole genome shotgun sequence Length of sequence - 529 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 05:32:30 2011 Seq name: gi|256541404|gb|ACPV01000070.1| Lactobacillus crispatus 125-2-CHN cont1.70, whole genome shotgun sequence Length of sequence - 1528 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 295 - 516 198 ## gi|256843708|ref|ZP_05549196.1| predicted protein - Prom 580 - 639 2.3 - Term 800 - 847 4.2 2 2 Tu 1 . - CDS 1043 - 1519 217 ## gi|256843710|ref|ZP_05549198.1| predicted protein Predicted protein(s) >gi|256541404|gb|ACPV01000070.1| GENE 1 295 - 516 198 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843708|ref|ZP_05549196.1| ## NR: gi|256843708|ref|ZP_05549196.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 73 1 73 73 129 100.0 8e-29 MAEFELLRKFYLTSNENGLKVYHTNAVLVYERLAMDELLKTVITEPWLLSDLENVTALAQ HYGVMTRLFGLDV >gi|256541404|gb|ACPV01000070.1| GENE 2 1043 - 1519 217 158 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843710|ref|ZP_05549198.1| ## NR: gi|256843710|ref|ZP_05549198.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 158 1 158 158 268 100.0 7e-71 MNKDFSAIESNDLFKVVKSVVSFGLLAFCLLSLAAFKAPNSITSTVGYYVCIRIICQGFL DATTYIFEAVLIGLVINLLTVDAKNIHRELLPTLILVIQYLYPIMFVVDACKTLPKASVS LEKVATIPTNLLNIGPLILFIIVVEIFCHIQLPNSNKK Prediction of potential genes in microbial genomes Time: Wed May 25 05:32:49 2011 Seq name: gi|256541403|gb|ACPV01000071.1| Lactobacillus crispatus 125-2-CHN cont1.71, whole genome shotgun sequence Length of sequence - 34966 bp Number of predicted genes - 25, with homology - 23 Number of transcription units - 16, operones - 7 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 16 - 64 10.9 1 1 Op 1 1/0.000 - CDS 186 - 590 470 ## COG1210 UDP-glucose pyrophosphorylase 2 1 Op 2 . - CDS 640 - 1056 436 ## COG1210 UDP-glucose pyrophosphorylase - Prom 1273 - 1332 6.4 3 2 Tu 1 . - CDS 1335 - 1706 213 ## FI9785_173 transposase - Prom 1738 - 1797 3.4 - Term 2231 - 2266 5.1 4 3 Op 1 9/0.000 - CDS 2280 - 3266 1137 ## COG1091 dTDP-4-dehydrorhamnose reductase 5 3 Op 2 13/0.000 - CDS 3287 - 3895 889 ## COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 6 3 Op 3 16/0.000 - CDS 3922 - 4734 898 ## COG1209 dTDP-glucose pyrophosphorylase 7 3 Op 4 . - CDS 4739 - 5716 954 ## COG1088 dTDP-D-glucose 4,6-dehydratase - Prom 5799 - 5858 5.3 8 4 Tu 1 . - CDS 5860 - 7035 747 ## COG0500 SAM-dependent methyltransferases - Prom 7071 - 7130 9.6 - Term 7054 - 7101 7.9 9 5 Op 1 2/0.000 - CDS 7189 - 9456 1236 ## COG1404 Subtilisin-like serine proteases 10 5 Op 2 . - CDS 9456 - 10499 805 ## COG0464 ATPases of the AAA+ class - Prom 10544 - 10603 2.0 + Prom 10470 - 10529 6.9 11 6 Tu 1 . + CDS 10751 - 11980 930 ## gi|256843720|ref|ZP_05549208.1| predicted protein + Prom 12001 - 12060 6.7 12 7 Tu 1 . + CDS 12090 - 12956 434 ## COG2826 Transposase and inactivated derivatives, IS30 family + Prom 13074 - 13133 6.6 13 8 Tu 1 . + CDS 13251 - 14255 484 ## LCRIS_01574 integral membrane protein + Term 14369 - 14416 3.1 - Term 14225 - 14275 13.1 14 9 Op 1 . - CDS 14298 - 14840 444 ## lhv_1697 hypothetical protein - Term 14851 - 14889 2.1 15 9 Op 2 . - CDS 14910 - 15821 1377 ## COG0191 Fructose/tagatose bisphosphate aldolase - Prom 15847 - 15906 5.6 16 10 Tu 1 . - CDS 15932 - 17617 2119 ## COG0018 Arginyl-tRNA synthetase - Prom 17799 - 17858 8.9 - Term 17944 - 17974 2.9 17 11 Tu 1 . - CDS 17981 - 18667 709 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 18699 - 18758 4.3 - Term 18732 - 18762 1.2 18 12 Op 1 . - CDS 18793 - 19671 384 ## PROTEIN SUPPORTED gi|90022317|ref|YP_528144.1| ribosomal protein S15 19 12 Op 2 . - CDS 19644 - 20945 1495 ## COG1686 D-alanyl-D-alanine carboxypeptidase - Prom 21063 - 21122 80.3 + TRNA 21034 - 21120 60.3 # Leu CAG 0 0 + Prom 21045 - 21104 80.4 20 13 Tu 1 . + CDS 21219 - 21539 396 ## COG1983 Putative stress-responsive transcriptional regulator + Term 21577 - 21610 2.4 - Term 21847 - 21892 2.2 21 14 Tu 1 . - CDS 21916 - 23619 1767 ## LBA0909 mucus binding protein - Prom 23715 - 23774 12.5 - Term 23733 - 23787 13.4 22 15 Op 1 . - CDS 23836 - 24009 65 ## 23 15 Op 2 . - CDS 23987 - 24103 57 ## - Prom 24246 - 24305 5.5 - Term 24240 - 24288 5.0 24 16 Op 1 . - CDS 24313 - 33279 12776 ## LGAS_0045 adhesion exoprotein - Prom 33382 - 33441 2.2 25 16 Op 2 . - CDS 33448 - 34809 1753 ## LBA1020 mucus binding protein - Prom 34841 - 34900 3.2 Predicted protein(s) >gi|256541403|gb|ACPV01000071.1| GENE 1 186 - 590 470 134 aa, chain - ## HITS:1 COG:L177590 KEGG:ns NR:ns ## COG: L177590 COG1210 # Protein_GI_number: 15673321 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Lactococcus lactis # 1 134 171 304 313 178 64.0 2e-45 MKVPHQEISKYGVITPEGKIDDNLYNVKSFVEKPSVDEAPSDLAIIGRYLLTPEIFDILE HQKTGRGGEIQLTDAIDTMNSTQRVFAHVFKGQRFDVGNKEGYLETSIQYGLKHPETRDA LRKYIIELSKKLEK >gi|256541403|gb|ACPV01000071.1| GENE 2 640 - 1056 436 138 aa, chain - ## HITS:1 COG:L177590 KEGG:ns NR:ns ## COG: L177590 COG1210 # Protein_GI_number: 15673321 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Lactococcus lactis # 2 135 12 143 313 183 70.0 7e-47 MKVRKAIIPAAGLGTRFLPATKALPKEMLPIVDKPTIQFIVEEAKASGIEDILIVTGKNK GAIENHFDANPELEQDLEKTGKSELLNLTQKITNLGVNIYYTRQPHPAGLGDAVYRARSF VAGEPFVIMLGDDLMTFD >gi|256541403|gb|ACPV01000071.1| GENE 3 1335 - 1706 213 123 aa, chain - ## HITS:1 COG:no KEGG:FI9785_173 NR:ns ## KEGG: FI9785_173 # Name: not_defined # Def: transposase # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 123 163 285 285 210 82.0 1e-53 MLDYIVTKASVHDAKETVELITNAHPDNRYLLGDEGYLGKNLHQRLEQMGYTLWTPYRKN MKNAQKHNKHYLMALRRTIESDFSLLSYYNAENNRARSLAGFQERLEVAILAYNMAYCLE RFN >gi|256541403|gb|ACPV01000071.1| GENE 4 2280 - 3266 1137 328 aa, chain - ## HITS:1 COG:CAC2315 KEGG:ns NR:ns ## COG: CAC2315 COG1091 # Protein_GI_number: 15895582 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose reductase # Organism: Clostridium acetobutylicum # 1 318 1 279 280 199 38.0 5e-51 MKAFVTGVNGQLGHDVMNELAKRGYEGVGSDLAPEYNGVMDGTAVTKMPYVSLDITDADA VNKVITEVNPDVIIHCAAWTAVDMAEDDDKVEAVRKVNVGGTQNIANVAKKLDVPMVYLS TDYVFDGQGTKPWEPDFKGYKPLNVYGETKLGGEKAVADTLDKYFIVRIAWVFGINGHNF IKTMLKVGSTHDEVKVVDDQIGTPTYTFDLARLLVDMIETDKYGYYHATNSELPATESGY DENGTKTGYISWYDFTKEIYRQASYDTKVTPVTTAEYGLSKAVRPFNSRLDKSKLVENGF KPLPTWPDAVSRYLEILKKQGLFDELGK >gi|256541403|gb|ACPV01000071.1| GENE 5 3287 - 3895 889 202 aa, chain - ## HITS:1 COG:CAC2331 KEGG:ns NR:ns ## COG: CAC2331 COG1898 # Protein_GI_number: 15895598 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes # Organism: Clostridium acetobutylicum # 1 198 1 180 185 221 57.0 1e-57 MGQIKVEKNVGGIEGLAVITPTVHGDDRGYFMETFNQRDMMEAGFSINFVQDNQSSSTKG VLRGLHFQKHYPQIKLVRAVRGSVFDVAVDLRSNSKTYGKWYGVELTAENKKQFLIPQGF AHGFLVLSDVAEFCYKVNDFWHPNDEGGMAWNDPEIGIKWPHVKGDYPGSADASGYTMDD GTKLNLVERDQEWKGLKDTFKF >gi|256541403|gb|ACPV01000071.1| GENE 6 3922 - 4734 898 270 aa, chain - ## HITS:1 COG:rfbA KEGG:ns NR:ns ## COG: rfbA COG1209 # Protein_GI_number: 16129979 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Escherichia coli K12 # 2 260 5 285 293 340 59.0 2e-93 MKGIILAGGSGTRLYPLTLVTSKQLLPVYDKPMIYYPLSTLMLAGIKDILIISTPADTPR FEKLLGDGSQFGIKLSYKVQPSPDGWAQAFTLGKDFINGEPCAMILGDNIFYGNGFTKLL KQAAADARNGKAISIEEKPEHPKSNYAVTGLYFYPAGVSEKAAQVKPSARGEIEITSLND MYLQEGNLDVQLLGRGYAWLDAGTMQSLVDASNYVKMVEERQGVSISAPEEIAYIHGWID KDKLLDAAKHYGKSPYGQHLKSVAEGKLRY >gi|256541403|gb|ACPV01000071.1| GENE 7 4739 - 5716 954 325 aa, chain - ## HITS:1 COG:MTH1789 KEGG:ns NR:ns ## COG: MTH1789 COG1088 # Protein_GI_number: 15679777 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Methanothermobacter thermautotrophicus # 1 319 22 333 336 395 60.0 1e-110 MKKHPDYDIICLDSLTYAGNLSTLKSVMDNPHFKFAKLDICDREGVYKLFEEEKPDVVVN FAAESHVDRSIENPEIFLETNIIGTSVLMDACRKYDIKRFHQVSTDEVYGDLPLDRPDLF FHEDTPLHTSSPYSSSKASADLLVGAYGRTYGLPVTISRCSNNYGPYQFPEKLIPLIIQR ALNNEKLPVYGDGKNVRDWLYVEDHCKAIDLILEKGKPGEIYNIGGHNEMHNIDIVKLIC DYLDKPYSLIEHVTDRKGHDRRYAIDPDKIHKELGWLPETMFKDGIKKTIQWYLDNKEWW ENIISGDYQNYYEEMYGNRKVLDKD >gi|256541403|gb|ACPV01000071.1| GENE 8 5860 - 7035 747 391 aa, chain - ## HITS:1 COG:VNG0503C KEGG:ns NR:ns ## COG: VNG0503C COG0500 # Protein_GI_number: 15789731 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Halobacterium sp. NRC-1 # 136 352 10 223 262 97 30.0 4e-20 MPTYYTSGEFAKKAHVSIRTIRYYDQKNLLKPAARTKGGARRYTDQDFAKLQQILLLKYL GFSLSDIREMTIGSGDAQFLLNSLQIQKRLAEERLEEMKNVIAAIDSTSQALKSSQQVDW SKMLNLIHLTSINQSLSLQYKNATNISARIRLHRDYSVNKEGWFPWLFSNLHLKPGMKVL ELGAGNGALWSQNITKVPAGVTVVLSDISEGMLADAKKAIGDHSQFQYGVFDAQKIPFAD STFDLIIANHMLFYCDNIPQTLKEVHRVLKPGASFVCSTYSKEHMHEITDLVRNYNSNIV LSSTNLYERFGLDNGKQILQAYFKNVTCHRYQDAIELSESMPIISYILSCHGNQNSILLD HYQDFKQYVDRKVKNGFYITKDAGYFSAKKV >gi|256541403|gb|ACPV01000071.1| GENE 9 7189 - 9456 1236 755 aa, chain - ## HITS:1 COG:FN2100 KEGG:ns NR:ns ## COG: FN2100 COG1404 # Protein_GI_number: 19705390 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Fusobacterium nucleatum # 276 568 17 328 416 62 25.0 4e-09 MNKLIQLSQNWHYRSSANLYSSFPKLAKNSVVKSKTLKVKKLQLMNILNFWEKKQDLIEG AIISAYYDTVVPKTHRIQQLFRQNTTKHPNNFIVGVRYLGNKDDDLRHVITYHVKIDVLK KTISEIEKTINLMDSSFNNEINNKDLERLENNPTTLFKNKSDAKRFAQTIIDASYVEKFD VYFEDIDNTEEKIVSLYDLKTNTEDSSYLLDVLRKLGINKTREDILDRNVVLLDRDDLKI LKERGSFLVYAQSKDLFDLKKEFNTDVSPKELSELPEPNNEPIVGVIDTTYKELGYFKGW VEYDNDFEDGIDHGNEVTSIIVAGPKFNPGLEDNCGLFRVHHFGITRGGRESSFRIVRRI REIVEAHPEIHVWNLSLGSPFSTNTNRISNEAAVLDKLQAEHPDILFIIAGTNLDNGRSK EEKQFNRIGSPADSVNSLVVNSVDVDGKAASYARKGPVLHYFVKPDVCYYGGDITQPLVT ATSLGEKSVMGTSFAAPWIARKASFLMDKMHFSRETTKALIIDSASGWLTEKKDPKYMGY GVVPIDIRDVINCKSDEIRFIIRGISQKRITYSDGIPVPKDSLNKFPFIARATLAYFPTC SPNQGVDYTDTELSLQFGRIEGETSTAIKSIVNDNNVEKEYIPETDLRRWLGKWENVKVK AEKFTSRKKGKGVLGKGYWGLKLVSSERLYGYKHRPFNFAVVVTLKNLKGQNLNEEFKQL CIYNNWRVSDIDIDQMLQANLEGNTEINWTDDIDK >gi|256541403|gb|ACPV01000071.1| GENE 10 9456 - 10499 805 347 aa, chain - ## HITS:1 COG:MA4064 KEGG:ns NR:ns ## COG: MA4064 COG0464 # Protein_GI_number: 20092857 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATPases of the AAA+ class # Organism: Methanosarcina acetivorans str.C2A # 85 231 187 340 428 79 35.0 7e-15 MKKSDVVDLIKYHVDKNNVAFKQKALEIADEFKAMGDIDIGSYINSLLATQGVFVPQEIH YSFKYLHQVSDLNKTVFKLPDSIYDNLRGIMNAINRNNGINKFLFVGKPGTGKTESVKVI SKILNKTIYKVDFDSVIDSRLGQTAKNISELFNEINNIPYPEKVIVLMDEIDAIALDRIS SNDIREMGRATTAVLKGLDELNSNIILIATTNLYKYLDDALSRRFNLIVNFNQYSTSDLM DVAVAIMNDIYKDTDYKISRNIKLFKKIVGLYDDKIPLPGNLNNVIRTTVAFSDPNDPND YLVRLYKAVSGEKMNISQLSEEGFTLREIGILTGKSKSSVARILEDK >gi|256541403|gb|ACPV01000071.1| GENE 11 10751 - 11980 930 409 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843720|ref|ZP_05549208.1| ## NR: gi|256843720|ref|ZP_05549208.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 409 7 415 415 729 100.0 0 MQNLKLISNNYNPNDDCATSIQVERLLSNYKKHHESVDNNDDALIKKVKDSFPIITNKNG EVRILGLLQALNSVEQITNFKTDKKLKLSDLENIDFKLVPPSTHHEMYFNVANDSNYSTI YNAKNTFLDYYDLAKHANYLLKNGKNVNLLDDLNDLQSTDNLSSRDFTYRFIQNNGSNYL RAIVSKGRYKFYDNPIALYIAISVLSQYIKENNRDFICQKLIVTDSKLYAYFLEKESVTI RNGITIQTGLILSNSELGDGAASFNAYYVIRNSENKKFVGLNSPIASINHGNNPIRIEKS FEQLNKFEKQRIDAIAAVEKVKFTKKLTRDDLSKVATLISRHMPMRQTEAKHVKDRWLTF VEAETALKNTFSLMDLFDKLNSFLENEDPDIQLIMESRISRLLRHFVKK >gi|256541403|gb|ACPV01000071.1| GENE 12 12090 - 12956 434 288 aa, chain + ## HITS:1 COG:L0443 KEGG:ns NR:ns ## COG: L0443 COG2826 # Protein_GI_number: 15672663 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Lactococcus lactis # 11 287 9 279 315 130 37.0 4e-30 MDSLHSIMPKHKKGKHLSLEERVIIQTRIKDGFSLRAIAREIGCSSSTISYEIKRGTVLL YHGKQKRYKAERGNEVYQTNRRHCGRKSDFLKKSDFIKYVNKHFFEDNWSLDVCANRCLA VGEFSSDQIVCPRTLYNYVDQGLLAIRNSDLPEKLKRNTKIHPKEINDRKEFGHWECDLV LGHKARDDQVLLTLSERMSREFLILRIPDKTAASVMSAFQTLHKQYSEHWNEIFKTITTD NGSEFADLSNLEEVSNTLVYYAHPYTSCDKGTVERHNGLIRRFIPKGD >gi|256541403|gb|ACPV01000071.1| GENE 13 13251 - 14255 484 334 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01574 NR:ns ## KEGG: LCRIS_01574 # Name: not_defined # Def: integral membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 334 34 367 369 497 82.0 1e-139 MIMGIHQPDSVQNIFGVFYNLVKYTAPAFIFGILYTTIRTNDEQGSFCYQKHMKANWSNL FVPTIWWTLIYLLGMPWLQQVDHFHNLGTFCWQFINGNAAPHLWYNTMMLQFIILMPIFW GISCFVKQNAKRSIAVAIITFILYFTWLYFYDYYVFHGIHEHDWYLIDRIFISFFIYGVY GILAWQFRDYYDSFVTKFWWLILMVFIGCFIWTNIELQNFGHPINFNNAPYYKLSMTLYC LAVIALVSAFCLHQVRKNSQTSLKVFHFLAVYAYRAYLSNVFWNQLVWRGLNMEYHAEFH PILTLFGTWILTWILSFSSAYLLHVWWTKAKQLL >gi|256541403|gb|ACPV01000071.1| GENE 14 14298 - 14840 444 180 aa, chain - ## HITS:1 COG:no KEGG:lhv_1697 NR:ns ## KEGG: lhv_1697 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 172 1 172 172 263 77.0 2e-69 MKELNLQLKDTEWPLEYIDHDRKIVRAIVFDDQENYYFVRAKRDDDFGKATLIETSGGGV EAGEDLETALKRELKEELGAEVEIMHKIGIVSDYYNLIHRHNINNYYLCRVKSFGTKHLT QQEIDNFHLSTLKLNYEEAVAEYEKCAATKIGKLIAARELPVLKYAKKLIDEDLKRSKAK >gi|256541403|gb|ACPV01000071.1| GENE 15 14910 - 15821 1377 303 aa, chain - ## HITS:1 COG:SPy1889 KEGG:ns NR:ns ## COG: SPy1889 COG0191 # Protein_GI_number: 15675705 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Streptococcus pyogenes M1 GAS # 6 283 5 289 293 309 54.0 4e-84 MAYFDNGNQIFKDARKNHYAVGAYNTNNLEWTRAELRAAEETRTPLLIQVSTGAAKYMGG YKFVKDMVADQMDSMNISVPVILNLDHGDFESAKECITLGYSSVMFDGHALPTDENLAKT KEIIKLAHERGISVEAEIGKIGENQGGGELASVEDAKKFVAAGVDKLACGIGNIHGVYPA DWKGLNFDRLKEIAEAVPDTPLVLHGGSGIPEDQVKKAIKLGIAKININTEFQLAFQEAT RKYIEDEKDLDKKAKGYDPRKLLLPGAEAITAKMKEMISWMGTKTIDDELKDASFDRSSL NEE >gi|256541403|gb|ACPV01000071.1| GENE 16 15932 - 17617 2119 561 aa, chain - ## HITS:1 COG:L0344 KEGG:ns NR:ns ## COG: L0344 COG0018 # Protein_GI_number: 15674020 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Lactococcus lactis # 1 561 1 564 564 622 56.0 1e-178 MDFKNEVVDLVASQVDLPKEKIAALIERPKNAKMGDYAFPAFILAKTLHKNPAEIAKNIA DNLSSDDFANIQAVGPYVNFAIDHEKLVSSTLKDVLTEKEHYGDQKIGEGNVPIDMSSPN IAKPMSMGHLRSTVIGNSIAKTMEKVGYTPIKINYLGDYGTQFGKLIAAYKHWGNEEDVK KDPIMNLFHYYVKFHQEAEKNPELDNEGREWFKKLEDGDPEAVKLWKWFREVSLKDFKRI YKELGVTFDSYNGEAFFNDKMQPVIDELKEKGLLHESRGAQVVDMGEGENPAIIVKSDGT SIYLTRDLAAAEWRMKEYNFVKMLYVVGNEQAQHFVELKTVLKKMGYDWADEIHHVPFGL ITQGGKKLSTRKGNVVFLDQVLKDAVSLAKKQIQEKNPDLADQDQVAHDVGVGAVVFHDL KNDRLDNFDFDLEEVVRFEGDTGPYVQYTNARAQSVLRKAAAMGENPSETDLALDDDWAF AVAKDLADFPRIVARSAEKFEPSVIAKFALDLAKKFNKYYANVKILTKDDKIGARLALVQ ATSIVLTESLRLLGVNAPKEM >gi|256541403|gb|ACPV01000071.1| GENE 17 17981 - 18667 709 228 aa, chain - ## HITS:1 COG:BS_yciB KEGG:ns NR:ns ## COG: BS_yciB COG1376 # Protein_GI_number: 16077404 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 30 225 21 193 194 116 35.0 4e-26 MKKNIIIGITSIVLAFGAIIGLAKVCAPKSDVSQEAATTQTKAKTKKINKIKKKQAKKVD NGALYRPYSDPKDLRKAGTWKKKSEPKKYPKIKPYEKDLTLRVSLKGNRTYLLRKGKVLY TMLSTGGIYKKGKSLTPTGTFRIQNGRGDSFFNYNLGEGANNWTSWSPDNVYLFHSVPTK ADYSYNLKEAAKLGRTQGSHGCIRLSVPDSKWIMDHIPDGTKVIIKNN >gi|256541403|gb|ACPV01000071.1| GENE 18 18793 - 19671 384 292 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90022317|ref|YP_528144.1| ribosomal protein S15 [Saccharophagus degradans 2-40] # 8 285 224 499 500 152 35 3e-36 MALDFRRKINMTEISEDILKKVIKERESDTHKGDYGRVLLIGGSENYGGAIIMSTEGAIN AGTGLTAVATHPLNLASLHARVPEAMFINWRDAKLADLIKNMDVVVCGPGLGMSDLAKQI LVILRRCTSEKQTVVLDASALDLISQDKNLLPTNAGHLILTPHQMEWQRLSQIRIPFQTD SANIDALNQLIPDTNALLVLKSNHTHVYNGTGQIFVNPIGNPGMATGGMGDTLAGIIGGM VAQFGPGVETVQAAVYLHSLAGDLLAKDNYVVRPTELSKVLPKLMKKYSELA >gi|256541403|gb|ACPV01000071.1| GENE 19 19644 - 20945 1495 433 aa, chain - ## HITS:1 COG:BS_dacA KEGG:ns NR:ns ## COG: BS_dacA COG1686 # Protein_GI_number: 16077078 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus subtilis # 42 431 33 426 443 234 40.0 3e-61 MFFSKKIKRAVITTIAAVSIFSCGAVFATTPVNADTTNSYQADQVKLNVKSAIAIDSDSG QILYAKNATQTLPIASMTKLVTVYLALQAIKNNKLSWDQKVKPTAPIVKVANNAEYSNVP LKMGHSYTIKQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRAQVKKWGIEDAKIYTA CGLPNGNLGKDAYPGVNKNAENSMSAKDMAIVGQNLIKDFPEVLDTTKLAHLDFKDAGHT TKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVQHNGARLITVVMGARHRDG TDPARFMQTKKLMNYIFTKYRPVTMTAGSQMNGAKTIKVTDGDNATTNLGLKSKTTIWDP ADGKTLVASLNKKSVEAPIKKDQTVGDYQFKSGNEKIVSLSNPNGMNVKAKALSANNKVN FFVRIWRWIFGGR >gi|256541403|gb|ACPV01000071.1| GENE 20 21219 - 21539 396 106 aa, chain + ## HITS:1 COG:MA4346 KEGG:ns NR:ns ## COG: MA4346 COG1983 # Protein_GI_number: 20093134 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Putative stress-responsive transcriptional regulator # Organism: Methanosarcina acetivorans str.C2A # 1 72 111 183 183 57 42.0 7e-09 MQKRLTKSQNKILAGVLGGIANYFDLDPAWVRIIGAALILFTGVFPGVALYIIAAMVMPE PGQSAPKAEKHTADYQTGRPNTMNGDFTKSDDQNPDSTEKKDDQSE >gi|256541403|gb|ACPV01000071.1| GENE 21 21916 - 23619 1767 567 aa, chain - ## HITS:1 COG:no KEGG:LBA0909 NR:ns ## KEGG: LBA0909 # Name: not_defined # Def: mucus binding protein # Organism: L.acidophilus # Pathway: not_defined # 6 532 1 508 508 297 36.0 8e-79 MERPKMNKFTSIFGKNIKAVVKYVDLDNDGEVLESTKKFEGKPKTQVEYDPSDEIAKYLN QGYVLERDGFDENPIFEEDVDEYVISFKHKHLVKEYEQKKIKQLVHYQGAASRTPEDSTT EIEFVHNQEIDAVDNHVIKDLGWKPKEQSFMIIGTPTLPGFVPDLIEAGGETVTAEDKDK EYTVNFTVNNKPSTSEQSAVVKFVDLSDQNKVIFQKNLTGQPNMQIEYDPEAEIKRLEDE GYSLVKNGFNDNGDIQFYGNADGYQPVFIITMKYSAVAVDAKHPNDAVDPDIYSKESKLT VKFVGVDDAPKDKVQTIHWNRTVTLLPSTKKVIESGRYDSDWKAQDVKVPQIEGYHADME VVKAPELSQDDQVITVSYAKNEAVKEAKAEPVHENESYTDDDSITDQPVAKQTEITKVVS DLEQNSTVKEQVAIINFIDVDNDGNSITSSGILNGKPGESINDLYSTENPLKIIARAGYH VVFNNFDKKGTVQRFNDNALMPQVFTIGVSKKAKGTDVLDKDATKKEIEKIKNDLAVSKE ANPDYSKTMMDLTNVVSSLYDLVSKSE >gi|256541403|gb|ACPV01000071.1| GENE 22 23836 - 24009 65 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVGLLKTKKIINRGLFKMFENEKNVKNSETNLHFGTKKVSVSSMVSMLEADGWNLEK >gi|256541403|gb|ACPV01000071.1| GENE 23 23987 - 24103 57 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFENKELEETTSLHFNTKDFTINDITSMLEVNGWATEN >gi|256541403|gb|ACPV01000071.1| GENE 24 24313 - 33279 12776 2988 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0045 NR:ns ## KEGG: LGAS_0045 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 1 997 461 1460 3692 1278 77.0 0 MNTNNDLNTTARYHNAGIFAVGNGNFTTGYKSVVTLNTSIGQGISMTGMRPYVTDDDRFG GYGARDRSDGSGQINLGQYSTLNFTGRDGVILGNNSHFNVGDSANVHFENKGRGVALDLA ANSDINIGDHAVTYFHSVGKNNIDALGRNAGVASGSYDGYNYIGVNEGGNITVGQFATFR VILEGRGDNAWDDVVSLDSRDVNTNAAFTSKTGATIDIRDDNTNFYAELISFPLGASQSR IDIHDPLLLNLQRYSSGGATTGWMATGGDKINTTSSQYTSNLIYMSGANGEFSVDGTNYV VYQRIKSDGSKQIWLNVNGVNIPMNGFQTKNIWDNKANPDVSINGNGLTGGVRANQVHNY YGSPLIGKDAPYYGISTQRASHQIWFPHQTTMEVTGTHTNTIKYVYSDGTPVTDANGNPI VKTQDITLTRKLTLDISQDKIEDIQNYALSHTSDETLEYIKNAQAVTADSGWTYTDAQGN KITSPYAEVVSPTVKGYTATIQSSNVPGIKKGADGSSVTAKLQFKEDLVQNGEISSDYKA QGISAIIPDNYETVVVYSVPQDVKDTLKFYDDATKSYITDAPDQTAIGKENDTVNFKDGA STVKSLEDKGYKFVNVTDGTPDDTKATILTGNSFDKVDFGKFGKSGKTFVVHLTHKVIPV TPYTPNIPSNSKITKDDLTKTATRTIHYVENGQNGAALKDPTVQTVTYSGTAYIDEVTGQ MVNAKADGKDSQGNTTYVVDPDNKTTPSITWTTSNNGKFAQVTPDATINKDGQNWNTTVK SVNEENAPEVSKITGKTTNEDVYVPYTLQQKTYTGVDENKTVTRTIKYLDNETKEEIKGL DPVTQTTNLHRTQIKDEKGNVVGYGTISADGHSYTINNNWIIDNNGWSAQVSPDATGLGY KKTPHFDNGQDASTVPAGTVSVTDPQDKTVKVYYDHDYEPVTPDHPHDGVDPSEYTKDVN ETVHYVYSDGTKAADDNVQTSKWSRTLTVDKVTGQLVPNGQYTTEWAIAKGQPSEYSQVN SPVIKGYYANQANVPATKVTQDDIEKTVTYKPLGHIIPVDPTTGDPIPNAPQPQFPNNPT DPTKGNPGEKPTVPGYHPQDGKPGEPVSPVPGNPGEDVKVPYVKDQGTVSVIFHDDTTNS TIPNVGFNSGDAAADTPVTYNPEKNISDLEKQGYVYVRTEGTLPGKVEANKNITVTVHMK HGVQPVTPTTPPTDVPKNTPKEAQPDQLTKKVNLTVNYVNADGTTFNGNVPANAKQTATF TGTAYVDKITGQLVNAKQEDGKWVINTDDTATPEITWTSDKTSFEGVTSPAEKGYHVSNV SSHADGDNVAAITGLTKDSQDITVTVTYAKNGTKIVGERTVEGSMTVHYTGAGDLTPKDN VQSGVNFHYTGDVHDAETNELVSKGHWEVNGVTGDSYQFNEVDSPAVSGYTAEVKVVPGF KATPDKPTFETTVNYTKNGTEIQNKKNVPASQTVQYVDDQGNVLRPEVKQNSEFQYSGDT VDKVTGETIKPGSWNETTHNFTAENVPVIKGYVAVSGYTNNNGKYTAGGFTATNTGSKED NNKVFKVVYKKVGNLVPQDPNGNPIPDPKNPGQNVPNVPYTNDPTDPTKVTPNEKTPDIP GWHTDTPNVTPTDPTKDTPVVYTKNVENQNVTVKYFDDTKETDLSSYDKSISAKPGEALN YSTQPSITELENKGYKLVSDNFNVTTMPEKGENYEVHFVHKTTTITPGKPGKPGEPINPN DPNGPKWPTGTDAKALTKQSNQTVHYVYADGTKAADDNVQNTTFAHTLVFDNVTGKQIED KGWTPESHTFKDVTSPEIDGYHADKKTVAGATVTVNDPTSETTVIYAKNDTEIRNHQEVT ASQLVKYVDEDGNELRASKNQNFTFTYTGDTYDKETGKQIATGKWNQTSTDFTSENVPVI DGYVAVKGYTRDDNDKVVAGGFTTSYDASDAKRNRTFTVVYKKVGKIVPVDPSKNPIPDA PTPSYENDPTDPTKVTPDEPTPNVPGYTPSQNTVTPPDPTKDTPVVYTKNVEQKAKVQYI DLDDNNKVMSESPVLTGQAGDKIDYSTTNEIANYEKQGYVLADDGFSNNPVFDNVEGNEQ IFKVTFHHGQIPVNPDHPHDGVDPSKYTKDVKETVHYVDTEGNKVHDDNVQTSKWTRTLT VDAVTGKTIDNGQYTTDWSIAKGEKTVYDQVNTPVVDGYHADKREVPATAVTQDNIDVTV IYAKNGKIIPTDPSGKPIPNVPTPTYPTDPTDPTKVTPDEPVPDIPGLIPSKPTVTPTDP GKDTPVPYNPVIPAKDQAAVVNYIDSDEGNKVITTSGNLSGKAGSTIDYSTKSTIADLEN KGYVLVNDGFPAGAKFDSDDNTTQIFTVVLKHGTVPVTPDKPGKPGEPINPNDPDGPKWP EGTDENSVKKTGTQTIHYVGAGENTPKDDVQTFDFTKKMVVDKVTGKIIDSGEWNVTSHT FGYKDTPVIDGYHADKRNAGGSVVTPDDLNKTVTVTYTQNGKIIPTDPSGKPIPNVPNPT YPTDPTDPTKVTPDEPVPDIPGMIPSKPTVTPTDPGKDTPVPYTPVTPVVNTVTGKITYI DDDATGNKILDVDNFSGKVGDKIDYTTAGEIQSYVNKGYVLVSNNFKDGDETFAKDGNVF EVHFKHGTTTVTPEKPGKPGEPIDPSNPEGPKYPAGTDEHAVKRTGTQTVHFTGAGDKTP ADKKQSFDFTRKITFDNVTGKIITTTPWNEASHTFGYENVPVVDGFHTTVKTAGGTTVTP DDLDKTVTVNYSQNGKIIPVDPSGKPIPNAPTPTYPTDPTDPTKVVPNEPVPNIPGMVPS KNTVTPSDPGKDTPVIYNNGNTPVNPDTPTTPTNPTTPTTPTTPDEPTNVTPHAETPETP SEPEKPSDDTNTVKPHAGVVPTSKKKSTTTTKTVTPHAQREVRITKNGNIINSKGHTIGY VDDKGQVHKTLPQTGDSAELAEAEAILGGIAAGLGLIGLAGSKKRRRN >gi|256541403|gb|ACPV01000071.1| GENE 25 33448 - 34809 1753 453 aa, chain - ## HITS:1 COG:no KEGG:LBA1020 NR:ns ## KEGG: LBA1020 # Name: not_defined # Def: mucus binding protein # Organism: L.acidophilus # Pathway: not_defined # 1 406 1 401 2310 145 35.0 2e-33 MVSKNNRIKKMEKAAERKPHFAIRKLTIGAASVLLGTTLWMSTTASTSHADTNDDANSPE SHEKSNTTADNGTGDANKTVVITNNDAAKAAADATTDNVTINNNESTETKAAQDKNSSNS VSEKKSTETKSSVDTSSLEKSNVSASTVTTDKSTQASAANKASNNVATTTNKVANASTTT NKSASTTVNNTEKAAAKLAEDANVNTGNITKSTVSKDTTITDAGKVGKQDQNNVDTQTFN LNTAELGKLTKSSDSHFNPKLAAALFGNSLIQANANNAVNANTSALNSSALTNGDASALG ASLRAASGNNDTSNYQTVTNWSGLKGAVNSSASGVIISGTINVPQFTTVNQNNDLNINKD FTIIGADENATLNLNNNVINNNGNLTLKNINIKGAVAGNGTVNIEGKVTSTVGSDNSIIK GKTIDEANAAVQDQTSTGKIGTQGTSWVAGSNN Prediction of potential genes in microbial genomes Time: Wed May 25 05:34:14 2011 Seq name: gi|256541402|gb|ACPV01000072.1| Lactobacillus crispatus 125-2-CHN cont1.72, whole genome shotgun sequence Length of sequence - 17717 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 8, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 38 - 1684 1552 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - Prom 1711 - 1770 3.3 2 1 Op 2 . - CDS 1778 - 4192 3228 ## COG0495 Leucyl-tRNA synthetase - Prom 4427 - 4486 6.5 + Prom 4389 - 4448 6.7 3 2 Tu 1 . + CDS 4482 - 5147 464 ## COG0671 Membrane-associated phospholipid phosphatase + Term 5167 - 5194 0.1 - Term 5155 - 5182 0.1 4 3 Tu 1 . - CDS 5190 - 6113 524 ## COG0583 Transcriptional regulator - Prom 6147 - 6206 4.3 5 4 Tu 1 . - CDS 6239 - 7012 702 ## LGAS_0931 hypothetical protein - Prom 7158 - 7217 6.0 - Term 7173 - 7220 9.3 6 5 Tu 1 . - CDS 7239 - 7463 308 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 7584 - 7643 5.3 - Term 7565 - 7607 8.0 7 6 Op 1 . - CDS 7700 - 8920 1596 ## COG1252 NADH dehydrogenase, FAD-containing subunit 8 6 Op 2 . - CDS 8935 - 9834 824 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase - Prom 9869 - 9928 6.2 + Prom 9814 - 9873 3.5 9 7 Tu 1 . + CDS 9894 - 10883 1091 ## COG0142 Geranylgeranyl pyrophosphate synthase + Term 10935 - 10979 7.1 - Term 10771 - 10830 6.0 10 8 Op 1 . - CDS 10880 - 11581 376 ## PROTEIN SUPPORTED gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 11 8 Op 2 14/0.000 - CDS 11591 - 13339 189 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 12 8 Op 3 5/0.000 - CDS 13329 - 15047 192 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 13 8 Op 4 31/0.000 - CDS 15047 - 16063 1035 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 14 8 Op 5 . - CDS 16065 - 17495 1393 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 - Prom 17652 - 17711 7.7 Predicted protein(s) >gi|256541402|gb|ACPV01000072.1| GENE 1 38 - 1684 1552 548 aa, chain - ## HITS:1 COG:L52064 KEGG:ns NR:ns ## COG: L52064 COG2244 # Protein_GI_number: 15673787 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Lactococcus lactis # 12 546 21 557 557 311 35.0 2e-84 MEEENNLNSKDTQNTFLKGSAWMTFGSIASRILGALYIIPWYAWMGSYGNIANALTARSY NIYTIFILISTAGIPGAIAKQVAKYNALNEYGIGRKLFRKGLILMSILGIVSAAIMYFAS PLLASNGSQSDPRQVAVMRSLSYAILIIPILSIMRGYFQGYADMMPSAMSQFVEQFARVV WMLLTAFVIMQIQHGSYVHAVIQSNLAAAIGALFGIGLLIWFLFSRRNQLNYLVEHSNNR IHVSTTELFMEIIEQAIPFIIIDSGITLFSLVDQYTFHPMIASLVHASSDTIEDWYALFG LNANKLIMIIVSLASAMAVTAIPLLSAAHTRGDYKSISKQIANTMDLFLFVMIPAAFGMA AISRPIYTVFYGPDLLGSNVLYLSSFTAISLGLFTVLMAILQGLSENGLAIKYLVLGLIL KGILQYPMIFLFKVYGPLVATNLGLLIIVALSLKHLEVQYDFNLNRTSRRLAGVTAFSIG MFLVVKLCEMGLGKFLNPDHRFTALVLVIVAVGAGIVFYGLVTLKTGLAQSVLGSKVESI LVRLHMDK >gi|256541402|gb|ACPV01000072.1| GENE 2 1778 - 4192 3228 804 aa, chain - ## HITS:1 COG:lin1769 KEGG:ns NR:ns ## COG: lin1769 COG0495 # Protein_GI_number: 16800837 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Listeria innocua # 2 803 3 802 803 1159 67.0 0 MYNHKVVEKKWQDYWAKHDTFKTGTDPDKKNYYALDMFPFPSGKGLHVGHPEGYTATDIV SRMKRAQGYNVLHPMGWDAFGLPTEQYALKTGEDPEVVTKNNIANFKRQLNKLGFSYDWD REVTTSDPNYYKWTQWVFEQMYKKGLAYEAEVPVNWSPDLGTVVANEEVIDGKTERGGYP VYRKNMRQWMLKMTAYADRLLEDLDDLDWPEPVKEMQRNWIGRSEGAQVTFKVKDSDKTF DVFTTRPDTLFGVSYTVLAPESKLVQEITTPEQKEAVDAYIKKIESKSDLERTDLNKDKT GVFTGAYAINPVNGKEVPIWISDYVLASYGTGAVMAVPAHDDRDYAFATKFGLPINPVIE GGNIEKEAFTGNGKHFNSEFLDDLDNEEAKKRMIEWLEDHNCGKKKVNYKLRDWDFSRQR YWGEPIPVIHWEDGTTSLVPEDQLPLRLPHATDIKPSGTPESPLANLTDWVDVVDENGRK GKRETNTMPNWAGSSWYYLRYVDPHNDKELADYDLLKKWLPVDLYIGGAEHAVRHLLYAR FWHKVLYDLGVVPTKEPFQRLYNQGLILKNHEKMSKSKGNVVNPDDVIDEYGADSLRMYE MFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQERIVDENDGTLDKVYAET VKKVTEDFDALHFNTAISQMMVFMNAAQKAKTIPREYAEGFVKLLAPVAPHMMEEIWQVF GHDESITYAKWPTYDPAKLVESTVEIMVQVNGKLRGKFQAPKDADRDDVQKQAMEIEHVK KFLEGKDVKKVIVVPNKIVNIVAK >gi|256541402|gb|ACPV01000072.1| GENE 3 4482 - 5147 464 221 aa, chain + ## HITS:1 COG:lin2125 KEGG:ns NR:ns ## COG: lin2125 COG0671 # Protein_GI_number: 16801191 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Listeria innocua # 3 205 4 210 231 95 31.0 5e-20 MINTKRPPKDTLIPGICFVVIYAVWAALVSSGSQFIHNFDNAVINIVCNNNPANVAFAKD FTNLGNTSVITIETIIVFIVLLIFKQYAYAWFTAGVMICANGYNWIIKHAVMRQRPTVKH LVYADGYSFPSGHSVGSAALFGVLIILTILLVRSKFWKTLLIIIWALFPLMIGYTRIFVH VHYPSDVFGGWIEGITFVLLGYSFLYHFYIEPKMIDMKRKQ >gi|256541402|gb|ACPV01000072.1| GENE 4 5190 - 6113 524 307 aa, chain - ## HITS:1 COG:BS_yybE KEGG:ns NR:ns ## COG: BS_yybE COG0583 # Protein_GI_number: 16081119 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 21 249 5 225 278 105 29.0 1e-22 MNNPEELQHFLDVLLKESNFTRAAKELYISQPYLTQLIGRIEKKLGTKIINRDERPYTLT PAGLIYYQYLENVSYNKQQLGRKLEAYTHPDQQIIKIGILESLGTYLLPEILPQFLQETP NVKIQLFENFPRENERRLLNGELDCYIGQTPEALDSSLDVVVGGEERYYVVISPASPYYQ AGKFILNSDELDLKEVLQEPLVLSSPGSAIRHQVNGLFQRLRLEKNIVMESNSIITATNL AIHGVGITISSASIIRRMEQTPINLLPLDRKLMDVVFFIASKSGEKSPALENLISIFQKT HLQAKIG >gi|256541402|gb|ACPV01000072.1| GENE 5 6239 - 7012 702 257 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0931 NR:ns ## KEGG: LGAS_0931 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 257 1 257 277 321 64.0 2e-86 MSKEKELNVSEALGFTDDLMFQIVMRDPEICRMFLNEVLPHLDIQDITVRTQERIAFNQE DKVSILDVLITDSRGRRYNVEMQVAHKADMDKRARQYLFKMMEDGFLRRKQEYGELHAVY VIFILPFDPKGKGLKRYTFVYTAKEDPSVELNDDSALIYLNTKGTKGEIRPELDDLYRMI EGKPTSNGKLVSRIKKSMNNYRRTEEWRQHVMNTEEVAEAAKQLGMEEGMHEATVAAIHK TINMLRRMKCSPKQILQ >gi|256541402|gb|ACPV01000072.1| GENE 6 7239 - 7463 308 74 aa, chain - ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 1 60 442 501 506 64 53.0 4e-11 MGGLVIDTKAHVLNKDGQIIAGLYSAGENAGGIHAGNRLGGNSLADIFTFGRIAANTAYE DKHVTDVITGASQK >gi|256541402|gb|ACPV01000072.1| GENE 7 7700 - 8920 1596 406 aa, chain - ## HITS:1 COG:lin2488 KEGG:ns NR:ns ## COG: lin2488 COG1252 # Protein_GI_number: 16801550 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Listeria innocua # 4 405 6 402 403 265 35.0 1e-70 MKTVVVLGAGFAGLKTVVALQKKLREQVKIILVDRNPYHYETIRLYEVATGEIPYTGMSY EINDVINPKMTTVITDEVEKVNIADKTVELKDHAPLKYDYCVVGLGFTLSNMGIKGATEN ALPMSNVKQAEAIRDHLYAEMKAYRQDHDSKHLSVVICGAGFQAIELGNAIAKVRPELAQ MAGAQPDEITIRMIDGSPRLLPMFQGKLLDYALNTIKKNKVEIIKPAYVNEVTSTSVLYK MANEKDNAELQEIKAGTRIWMMGFSGSPVIEASGFKNRRGRVMVGDHLTAPESDDIYVLG DVSSVMVPGKKWPYPNTGQLALSMANYAAKDIKSRIMGQTRPDKYAYHDLGVVVNLGNSE AAGLAMGHAFKGYFAATLKKITIDKSVLETGGIKETMAIGQFDFYH >gi|256541402|gb|ACPV01000072.1| GENE 8 8935 - 9834 824 299 aa, chain - ## HITS:1 COG:L187450 KEGG:ns NR:ns ## COG: L187450 COG1575 # Protein_GI_number: 15672164 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Lactococcus lactis # 1 298 1 299 301 247 46.0 2e-65 MSLSVFLELIEIKAKTASVIPFFLGMCYSVYYYHQVNWGFALVFFIAMLLFNMVVDMFDN YCDYYHADSKNYQEKTNIIGRENISPNLVLGLIISFSLIAILLGLYLVAKVGLPVLWMGL FCFMVGYLYSFGPHPISSLPLGELFSGFTMGFMIVLLSVYINSFQVFAWNWATIGRIFLL ALADELWISNLMLANNLCDAQEDEDNHRTTIIHFIGKKGGLIAFSVKNVLAFLVIFLLPF LGIAPKTVWLTVIIVPFVYKQNKILIGKQVKTETFITGVKTLLVGSLTYLITYFLGILF >gi|256541402|gb|ACPV01000072.1| GENE 9 9894 - 10883 1091 329 aa, chain + ## HITS:1 COG:L186258 KEGG:ns NR:ns ## COG: L186258 COG0142 # Protein_GI_number: 15672163 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Lactococcus lactis # 7 327 5 324 326 214 36.0 2e-55 MNNSQPWQKYPLIRKPLEEVNQLIQATIRTPYSDLQDALLEMASNGGKYLRPSLLILSAQ IASKKETVSKQIIQLASSIEILHMASLIHDDIIDDSDERRGKISIQARFGKDTAVYAGDL LFTHFFDLILNAISEQDYMIKNAHTMHHLLAGELGQMAERFNLSQDFNDYLTNVKGKTAA LFRLAAEEGSHFGNGDEQTTQALASFGENLGIAFQIVDDILDYTGGKQLNKPTLEDLTTG VYSLPILLALSKKELREQLVPLLEKKRQMSKNDIEQIQKILLNSSVIEETHALAEQYTNR ALANLAQLPQTNATVLLKKMTRKLVNRTL >gi|256541402|gb|ACPV01000072.1| GENE 10 10880 - 11581 376 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 [Kordia algicida OT-1] # 14 232 1 221 221 149 36 1e-35 MLTNKVPEQDVHDLFTRVAPKYDLMNNIVSLGIQKSWRKKFLRQLDLNKNSICLDLCCGS ADSTIDLTKKAKLVTGLDFNQEMLKIAQKKIRQKQLQSKIKLIAGDAMNLPFAANSFDCV TICFGLRNVPDAVKTIQESYRVLKPGGQFAVLEMSQPTNALVKLGWQAYFKIFPYFAKLT HGNIKDYQYLSKTSKEFLSAEQLKKLLEQNGFTRVAVTKLTYGAGAIHLGRKD >gi|256541402|gb|ACPV01000072.1| GENE 11 11591 - 13339 189 582 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 361 556 21 214 305 77 27 6e-14 MINKIPVLRALKNDRWVRPYLEKYRKTLILAIALGILTFVCSGGLMFCAGYLISRSAAKP ENILLIYVPIVLTRAFGITRPAVRYFERLVSHNWVLKMTSKFRQQLYDSLERDATIFNSK YQLGNILGLLSDDVSHIQNFYLRTIFPMFVAWGLYAIIVIGLGIISPLMGIWMLILFFLI IFAIPIWSVLINGARQSYEKTVQDKLYVDLTDNVMGVDDWILSGRSKEYLALHVNDQDKF LQINAKMKKFDRWRDFVLQIFWVLVIVSLVIWGAARFGGRSTYYTNWIAAFALALFPTVE AFASLPTAAQETNIYKDSLKRLNNLPAPDRTKHKPIKLTAPFNLVLTDVHYAYPQTNKEV LHGINLNIHDGEKIAILGRSGAGKSTLAALLRGDRVPAKGHVTLNGIDTSKFGDQMSNYF SIINQTPYLFNTTIANNLRLGNEDATDEQLWDVLRRVGLAEMVQKLTDGLDTKVDEAGLR FSGGERHRLALARILLKNTPIVLLDEPTVGLDPITEQAVINMFIKELSGKTLIWITHHLQ GIDQMDQVIFIEDGQINMQGTPEKLWQTEPRYRELKKADLGL >gi|256541402|gb|ACPV01000072.1| GENE 12 13329 - 15047 192 572 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 330 554 2 229 245 78 27 3e-14 MIDKQLFKIDGAGSILKKLAGLEILQAFFIVGQALALASVLSKLWVGQPLDWLLLITFAA CFIARQLISTLRDSMLEKYSGRVAEELRQQLLNKVFRDGQALVQKQGTGSLITMSLDGVD EVRQYIKLIYSKVLTMMIVPVLIFVGMLFLSWTSAVILLVMYPLIVLFMIILGHAAQDRA IKQFGNFQVLSNNFIDSLRGIDTLKYLGLSKRYSKSIFNLSEGFRKKTMAVLKVAMLSTF ALDFFTTLSIAIIAVFLGFDLMNGKIALFPALGILILAPDYFLPIRDFAGDFHATLNGKN AFKRINELINLPEEKTNDLPLKTWSAQDQLKIKNLKFTYQKGTEIGPVSLQVQGFKKIGI IGMSGSGKTSLINLLSGFLTPDQVQIELQGQKTTTMNIPAWQRQMTYIPQEPYVFTKSLR ENIAFYNPQASDDEIKQAIHIMGLDALLNDLPNGLDTVIGRGKRVLSGGQSQRIALARAF LDPKRKIMIFDEPTAHLDIETEIDLKKRMMPLMQNKLVFFATHRLHWLKEMDYILVMDHG QLVEQGSYEQLQQNQGYFCKLMAGMRGENNDQ >gi|256541402|gb|ACPV01000072.1| GENE 13 15047 - 16063 1035 338 aa, chain - ## HITS:1 COG:L109201 KEGG:ns NR:ns ## COG: L109201 COG1294 # Protein_GI_number: 15672687 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Lactococcus lactis # 1 329 1 329 331 324 56.0 1e-88 MSFLQILWFILIGVLFSGFFFLDGFDFGVGMAVKTLAHNEPERDQVVRTIGPVWDGNEVW LITAGGAMFASFPYWYATLFSGYYLILLLILVGLIIRGVSFEFRAKCAPYQKHIWDNAMA IGSVMATFLFGIMFISMIKGMPIDAKGNISASFFDYFNWFSIVGGIALTLLCYLHGLNYI TIKTKGVISDRAQNYAQALYWVLYVGEVVFALLLIFQTDFMRVHPIATLVCLALIVGFSV AAHVATFTNKQGMALTCSGLTLISLVALIFCGLFPRVMISSISSKYDLLIHSASSSNYTL IVMTVATCILVPCVLAYTIWAYWIFRKRISMPRIGEVK >gi|256541402|gb|ACPV01000072.1| GENE 14 16065 - 17495 1393 476 aa, chain - ## HITS:1 COG:L107726 KEGG:ns NR:ns ## COG: L107726 COG1271 # Protein_GI_number: 15672686 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Lactococcus lactis # 3 473 4 467 491 487 54.0 1e-137 MDITSLARFQFAMTTIFHFFFVPFSIGTIFVVAIMESMYVHTGKPEYKKMTKFWANIFLL SFAVGVVTGIIQEFQFGMNWSDYSRFMGDIFGAPLAFEALLSFFIESTFIGLWMFTWDKV GKKLHLFFGWMIVFGTMTSALWILTANSFMQHPVGFALRNGRAEMADFGALLKNPQLMYE YGHVIVGALLTGTTILTGLAAFQLLKKRNLSDINKKIYRKTMRLGLILMLIFSAGEIAVG DMQMQYTLHDQPMKFAATEAVYKTTGEKAPWTVVAIANPKTHEVKGIDIPDMLSILSYHK TTGSVKGIEEINKELEKKYGTHIDGRKMDYYVPVNTLFWSFRVMCGFAALLFLMAIVGLI MTRKNKETLYNHRWLLWIFALLTFSPFLVNTAGWLITELGRAPWTVYGLFTIDQSVSPNV SVASLLTSNIVYFCLFTVLAIIMIALVVRFLHNDPDEYDKAQEASKVVDPFSKGAI Prediction of potential genes in microbial genomes Time: Wed May 25 05:34:22 2011 Seq name: gi|256541401|gb|ACPV01000073.1| Lactobacillus crispatus 125-2-CHN cont1.73, whole genome shotgun sequence Length of sequence - 11441 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 3, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . - CDS 938 - 1975 722 ## COG3589 Uncharacterized conserved protein 3 1 Op 3 . - CDS 2036 - 4027 1774 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 4 1 Op 4 9/0.000 - CDS 4099 - 4995 1029 ## COG2103 Predicted sugar phosphate isomerase 5 1 Op 5 . - CDS 5019 - 6989 2156 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 7091 - 7150 7.6 - Term 7176 - 7217 6.3 6 2 Op 1 4/0.000 - CDS 7225 - 8685 939 ## COG0477 Permeases of the major facilitator superfamily 7 2 Op 2 . - CDS 8709 - 9908 1658 ## COG0192 S-adenosylmethionine synthetase - TRNA 10066 - 10138 86.4 # Val TAC 0 0 - TRNA 10141 - 10215 64.4 # Glu TTC 0 0 8 3 Tu 1 . - CDS 10367 - 11254 768 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Prom 11289 - 11348 4.0 - TRNA 11343 - 11433 56.0 # Ser GGA 0 0 Predicted protein(s) >gi|256541401|gb|ACPV01000073.1| GENE 1 77 - 922 650 281 aa, chain - ## HITS:1 COG:HI0143 KEGG:ns NR:ns ## COG: HI0143 COG1737 # Protein_GI_number: 16272110 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Haemophilus influenzae # 3 277 6 280 288 129 30.0 9e-30 MLNLANKISDVYPNLNKTSKLIADVYFKEPRIFLNKNLQELGTITQTSGASVVRFCRKLG FKGFKDFQIACAQEMPNKQDAMVDTIINTNDEPTSVLYKLQLSLGKNIADIGKTIDHKSL DAAVDLMRSAQQIYVAGEGASGLAAQDLFYKLIRSGKNVNFVQSSHIALEQVANINKEDI LIVFSYSGLTQEPLLMAKQAQKNNAKIVAVTRIQDSPLKNMADTVITLPSNEKLLRYGAI NSLFAEIFASSLLYLSLISPNLKELNMKMKTTQNLTNQLKV >gi|256541401|gb|ACPV01000073.1| GENE 2 938 - 1975 722 345 aa, chain - ## HITS:1 COG:BH3573 KEGG:ns NR:ns ## COG: BH3573 COG3589 # Protein_GI_number: 15616135 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 2 333 9 339 351 162 33.0 6e-40 MLGISVYFQDYDENYLKKAAQAGAKYIFTSLQIPEEDYSDLDQKLPRFFELCDELGLEVI PDVSPATLEKLGIKGGDFEALKDKGFRALRLDYGFDDFDLIKKLQRNFFILLNASVVSLD YLDRARNAGVDFGKLALTYNFYPHTDTGMGWTDFKRKNWMLKDYGLRTQAFVPGDALKRF PLYEGLPTVERHRGVSPYVAAVELIHEANVDDVFIGDSKASIKNLRYIVDYQKDNILNIE CSLLPQYQQLYDQVIEVRKDMPEKLIRLSLSRKPDIPVCNTLNRHRGTITMQNKLAQRYS GEVSLIKSNLHFEARSNVIGFISPEYVKLLDFIDSNTKIIFRRLT >gi|256541401|gb|ACPV01000073.1| GENE 3 2036 - 4027 1774 663 aa, chain - ## HITS:1 COG:yfeW KEGG:ns NR:ns ## COG: yfeW COG1680 # Protein_GI_number: 16130355 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Escherichia coli K12 # 153 580 51 462 463 378 45.0 1e-104 MNSKKLITGGCTVALSVMMLASTVTYAPISNSQVYASVVKQKQEPTGQYQINDSFPIDEK NDNPKFDTWSLLDNINRKFYGFKGQGSVWVHSNNAKNFELYINGKNVSLKNISSNKWVKI DISKFTKNGNNALQISPKKGVRASDKFDIKLPYPTLVDKTKEYRNNDTFKTMDALINSEI KNGFPSAELVVVHNGQIIKRSAYGRVNAYFQNGKRRVNAPKVTNTTMYDLASNTKMWATN MAIQKLVSEKKLNIDAKVSSIFPDFKDNANDKIKGKTDLTVRDILMHQAGFPADPQYHNN NYNPDKPNERKKNANPVYTQNRDEVLKKIIATPLQYAPGTKTIYSDVDYMLLGLIIEKVT GQREDNYVENNIYKPLGLRHLMYNPLDKGVSKNKIAATELNGNTRDGQIDFNNIRHYTLQ GQVHDEKAYYTMHGVSGHAGLFGDASDLAVLAQMVINRGGYGNHRIFDEDTLDEFIKPKS TNYSYGLGWRREASTTYSGNYGWAFSGLSDASTIGHTGWTGTLTVVDPHDNTAVILLTNE RNTPILKPETTATANDFAGGHYLLSKYGDIASLAFAAINKDNSSANNAKLISLTMQRFNE IQKNKDDQTNADKADLCGIYDALKMRSKKHNSVARFLATTKGKQITAYVKANKNAVNNVR NSH >gi|256541401|gb|ACPV01000073.1| GENE 4 4099 - 4995 1029 298 aa, chain - ## HITS:1 COG:YPO2925 KEGG:ns NR:ns ## COG: YPO2925 COG2103 # Protein_GI_number: 16123112 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Yersinia pestis # 1 295 1 295 295 275 52.0 1e-73 MSLENLTTEQRNKNTMHIDSMSTLDMVKTINKEDKKVAEAVGTQDEKIAQAIDIGSARYQ QGGRLIYIGAGTSGRLGVLDAAELVPTYGIKPERAIGLIAGGKGAMYVAVEGAEDDPKLA AEDLKKLDLSEKDVVIGLAASGRTPYVIGGLDYAQKVGAATIAVACVKHSLIGQHANVAI EAVTGAEVITGSTRMKAGTAQKMILNMISTGIMIRQGKVYQNVMIDVLPTNEKLVERAER IIQTTTNVSLEKAAKILRDADKDVGLAIVMAKTGLKKNDAQLLLKEHQNNVSSVLKEE >gi|256541401|gb|ACPV01000073.1| GENE 5 5019 - 6989 2156 656 aa, chain - ## HITS:1 COG:L145238_2 KEGG:ns NR:ns ## COG: L145238_2 COG1263 # Protein_GI_number: 15673113 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Lactococcus lactis # 118 455 10 348 348 389 62.0 1e-107 MADKYSELGREIYANIGGPNNVKSMYHCMTRLRIKIRDNSKVDIQGLKDIDGVLGVVNAD TLEIVLGSGVNAKVAQDMVSQVGVKENEEFPTNTYQSEKSEVQAKAAEVHAQHKAQLKQT WWRKALDHISAIFIPLIPAFIGAGLISGVAGILRNMLTAKMLPGSWNLGVTILSMIASAL FAYLNIYVGINTAKEFGATPALGGIIGGVVLLPGIAAPVTIPNVLDGKPLAAGQGGIIGV LLAVWLLAYVEKWFHKHIPDSVDIIFTPFFTVLIMGLFTVFAIMPIAGWISNSLVGGINW VLDVGGPVAGFILGLFFLPMVMLGLHQILTPIHLSMIQKMGYTPLLPILAMAGAGQVGAA IALWAKCRKNKDLVRLIKGALPVGILGVGEPLIYGVTLPLGRPFITACVGGGIGGAVVAA FGHVGSIAIGPSGVALIPLIANNMWWAYCIGLLSAYAGGFVATYFWGVPKDAIKGKVENP TPEVSERRAAEKHADNLNMPSEKVEISFEAPVSGDLEKIEEVKDDVFSQKMLGNGFAIDP SNGTVVAPVDGKIDTVMNTKHAITLKTSKGNLDVLMHLGLDTVELKGAPFEIDVKPGDLV NAGEKIGTMDIAAIKKAGKDPVVLTIIANMDHIDQVSKVEDSPVKAGQVVFKAMTK >gi|256541401|gb|ACPV01000073.1| GENE 6 7225 - 8685 939 486 aa, chain - ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 1 471 1 475 491 346 43.0 5e-95 MKKTNVPIVTLAIFMTTFMTAIEGTIVSTAMPTIVSDLDGLEIMNWVISIFLLMTAVSTP LYGKLADSIGRKPVFLFGIALFVIGSSLCGLAQNMVELILFRVIQGLGSGAVQPVAITII ADLYALQKRAKMLGLNSGFWGVASVIAPLLGGFIVQHLSWHWVFYINVPIGIIAFLLVIF CLQEPKHSSKSKLDLQGTIWLVILLLALMFFLQDLGSNTNIAIMAALAVLVVISIIMFFR AEKRAVDPIMPLTMLKDKEFLAINLITLLISGVVIGFEFYIPTWMQGINGTNPSLAGFAV TPSSLMWIVGSFLIGGMFGRWGIKKTYDYMLLVLVVADLVLILVPIYTSFWVFCVIAAFN GTAFGAITTASQVRSQVLVPKDDIGVATSFNTLMKYLGQTMMVSIYGIAFNTMLAHGLSK RPGLNQEMMNKIVSAENAKSLAANVVPQLRQVLLGGLKAVYVVSMIVIVVSIVLNQLYRD RKLKKN >gi|256541401|gb|ACPV01000073.1| GENE 7 8709 - 9908 1658 399 aa, chain - ## HITS:1 COG:BS_metK KEGG:ns NR:ns ## COG: BS_metK COG0192 # Protein_GI_number: 16080107 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Bacillus subtilis # 3 391 5 393 400 551 69.0 1e-157 MERRLFTSESVSEGHPDKVADQISDAILDAMLKKDPNSHVACETIVTTGMVFVFGEISTN AYVDIQDVVRKTILKIGYDRPELGFDGNNCAVMVDIDEQSPDIAGGVDHSLETRENKSDN DELDQIGAGDQGLMFGFAIKETPELMPLPISLAHRLMRRVAALRKDHTLDWLRPDAKAQV TVEYDGNNKPLRVDTVVISTQTDAEVSNEEIHRAMIDLVIKEVIPAKYLDEKTKFLINPS GRFVIGGPKGDSGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSASYAARYVAKNIVA AGLAYRCEVQLAYAIGVAHPVSIMIDTAGTGKVDDDLLTEAVRNVFDLRPAGIIKMLDLR RPIYEQTAAYGHFGRTDVDLPWEKTDKTQDLLDYIKNKQ >gi|256541401|gb|ACPV01000073.1| GENE 8 10367 - 11254 768 295 aa, chain - ## HITS:1 COG:ML0337 KEGG:ns NR:ns ## COG: ML0337 COG0803 # Protein_GI_number: 15827093 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Mycobacterium leprae # 38 290 33 292 302 115 29.0 1e-25 MKLRKLIPFLFLISLLAITFSACSTKGEENTAKHRVNIVTSTNIYADIAKNIVGKHGHVQ AIIKNGDTDPHDFEPTTGSAKEVANANIVIANGLGYDDWMTNLANANDIHVVKVGNQLMG LKQGDNPHIWYNLNMPKKYVDYLVKTASKIDPKHAAYFKSNAASYLQKIDSIKKIAAKIN GREDKPVYVSEPVFDYALERCHFKIGNQAFEEAVENETDPSAQVIHEMQVKIKARKIAFF VNNIQASSSTVSGMVKLAEQHNIPVLDVRETMPNGISYYYWMKANYQKLFEIFLK Prediction of potential genes in microbial genomes Time: Wed May 25 05:34:31 2011 Seq name: gi|256541400|gb|ACPV01000074.1| Lactobacillus crispatus 125-2-CHN cont1.74, whole genome shotgun sequence Length of sequence - 28847 bp Number of predicted genes - 26, with homology - 25 Number of transcription units - 17, operones - 8 average op.length - 2.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 177 - 590 383 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 616 - 675 5.7 + Prom 506 - 565 8.0 2 2 Op 1 . + CDS 652 - 1869 578 ## COG3410 Uncharacterized conserved protein + Prom 1873 - 1932 7.4 3 2 Op 2 . + CDS 1963 - 3126 948 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 3131 - 3165 2.0 4 3 Op 1 . - CDS 3162 - 5990 2655 ## COG1061 DNA or RNA helicases of superfamily II - Term 6008 - 6049 6.5 5 3 Op 2 . - CDS 6056 - 7417 1451 ## COG0531 Amino acid transporters - Prom 7494 - 7553 6.0 6 4 Tu 1 . - CDS 7572 - 8399 822 ## COG0708 Exonuclease III - Prom 8426 - 8485 7.7 - Term 8878 - 8925 4.7 7 5 Op 1 . - CDS 8954 - 9514 861 ## LCRIS_00053 putative protein without homology, LPXTG-motif cell wall anchor 8 5 Op 2 . - CDS 9453 - 9704 192 ## LCRIS_00052 putative protein without homology - Prom 9792 - 9851 6.8 + Prom 9782 - 9841 9.3 9 6 Op 1 3/0.000 + CDS 10062 - 11075 1564 ## COG1052 Lactate dehydrogenase and related dehydrogenases + Term 11092 - 11150 9.7 + Prom 11133 - 11192 10.3 10 6 Op 2 . + CDS 11216 - 12385 371 ## COG0477 Permeases of the major facilitator superfamily + Term 12388 - 12425 4.0 - Term 12376 - 12413 1.0 11 7 Tu 1 . - CDS 12430 - 13248 828 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 13269 - 13328 2.9 12 8 Op 1 . - CDS 13446 - 15371 1549 ## COG0480 Translation elongation factors (GTPases) - Prom 15393 - 15452 5.6 - Term 15376 - 15418 7.5 13 8 Op 2 . - CDS 15454 - 16311 1007 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 16441 - 16500 5.9 + Prom 16323 - 16382 3.3 14 9 Tu 1 . + CDS 16424 - 17293 804 ## COG0598 Mg2+ and Co2+ transporters 15 10 Tu 1 . - CDS 17290 - 17997 622 ## COG1011 Predicted hydrolase (HAD superfamily) - Prom 18029 - 18088 11.0 + Prom 18069 - 18128 10.1 16 11 Op 1 9/0.000 + CDS 18364 - 19356 1049 ## COG2984 ABC-type uncharacterized transport system, periplasmic component 17 11 Op 2 13/0.000 + CDS 19353 - 20249 1040 ## COG4120 ABC-type uncharacterized transport system, permease component 18 11 Op 3 . + CDS 20246 - 21007 192 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein + Term 21198 - 21234 3.5 19 12 Tu 1 . - CDS 21467 - 22801 1423 ## COG0477 Permeases of the major facilitator superfamily - Prom 22836 - 22895 6.5 + Prom 22793 - 22852 6.8 20 13 Tu 1 . + CDS 22985 - 23167 194 ## + Term 23179 - 23209 4.3 - Term 23167 - 23197 4.3 21 14 Op 1 . - CDS 23201 - 23773 361 ## LCRIS_00035 esterase 22 14 Op 2 . - CDS 23773 - 24807 657 ## COG0628 Predicted permease - Prom 24868 - 24927 6.6 + Prom 24885 - 24944 10.2 23 15 Op 1 3/0.000 + CDS 25005 - 25637 741 ## COG0747 ABC-type dipeptide transport system, periplasmic component 24 15 Op 2 . + CDS 25689 - 26765 1155 ## COG0747 ABC-type dipeptide transport system, periplasmic component + Term 26862 - 26916 9.2 + Prom 27263 - 27322 2.6 25 16 Tu 1 . + CDS 27392 - 28117 341 ## COG3464 Transposase and inactivated derivatives + Term 28167 - 28208 -0.6 - Term 28059 - 28105 11.1 26 17 Tu 1 . - CDS 28236 - 28847 659 ## LCRIS_00029 mucus-binding protein Predicted protein(s) >gi|256541400|gb|ACPV01000074.1| GENE 1 177 - 590 383 137 aa, chain - ## HITS:1 COG:SP1549 KEGG:ns NR:ns ## COG: SP1549 COG0242 # Protein_GI_number: 15901392 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pneumoniae TIGR4 # 4 137 3 136 136 117 47.0 8e-27 MTAQKIIHDQLFLRQKSDLAGKNDLQVAINLRDTLLANRGKAAGLAANMIGQTKQIIAFY AGPLPFVMLNPRIIQKKQMYLASEGCLSLEGERNVQRYEEITVTYQNMELETVTQTFGDF IAETIQHEIDHCNGILI >gi|256541400|gb|ACPV01000074.1| GENE 2 652 - 1869 578 405 aa, chain + ## HITS:1 COG:YPL245w_2 KEGG:ns NR:ns ## COG: YPL245w_2 COG3410 # Protein_GI_number: 6325011 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Saccharomyces cerevisiae # 231 397 4 169 175 140 41.0 6e-33 MNNQASFKLSPYHQLNQEQSLLVQKILHFSITHCSNKNHPAVFTIYGEAGTGKSVVLSAL FDQLQKLNHQTGSQLYKTQNYFLVNHPELLKVYKQIAGPIKELYKKNYMRPTSFINQMDK KKTSADVVVIDETHLLLSQPDHYNNFYHDNQLEEVIKRSKVVILVFDENQVLRMKSFWTR KRLEAITHHYPHEDYQLHHQFRMMAPDSLIEWFNFFTHNKLMPLKKEMWHNYDFRIFNDA EKMRQEIVKRNQTDGLARILSTSGYPSTLDGGKHYIKEGKFMLPWDQYNYTSTPWAEIPT TINEVGSIYTCQGFDLNYAGIIIGPPISLIPGTNQLKVNLDKITDVEMFKKRNDLTNSKE KIEYEEKMVMNSLNVLFKRGIRGTYLYAHDPALRAKLAALFQQAS >gi|256541400|gb|ACPV01000074.1| GENE 3 1963 - 3126 948 387 aa, chain + ## HITS:1 COG:SA0909 KEGG:ns NR:ns ## COG: SA0909 COG1680 # Protein_GI_number: 15926643 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Staphylococcus aureus N315 # 25 367 62 388 397 85 25.0 1e-16 MKKSIIGLATAALLTTVPAFAITEPPQVQASSYSKTEMRNFVRNTLAQNNTRGSIVIIKN GQPQQISYGYAWYGKKVGNGNDNVVYPTASLQKVVTAAMIIQLMNENWHTSQKFTQNTKI SRWYPNLKNADNITIGQLMTHTSGIQATNTELDRGKVLSENDAINWAIDNTNNGTQGTPG TYFYNNTNYLLLAGIIIKISGQSYENNFNNRIINKLGLANTFLYQDIPSWKTDPISYVWN NGKNYQDAEYVKKTLASQLPGAGNMFTTPMDYYKIQLGLTNGSILSKSDFYYLTHLKSAT TNYSGGLHLDDDHTKSAYGSLSNTHFGNWIKMTTDNRYGIIMFLNQVSGDETAQKNIGTK ILDHIKPRMFDKDNNQDDQDLINISGN >gi|256541400|gb|ACPV01000074.1| GENE 4 3162 - 5990 2655 942 aa, chain - ## HITS:1 COG:Cgl1126_2 KEGG:ns NR:ns ## COG: Cgl1126_2 COG1061 # Protein_GI_number: 19552376 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Corynebacterium glutamicum # 183 940 1 781 789 546 39.0 1e-155 MADAMRDAILNGFVDQNYLGSEELGPKILANNQQERIWQNLRQELYSCKSFTWAVAFITQ DMLVPFKVIMADLAKNGISGTIITGDYLGFNNPRVFTELQKIPNLEVRIANKAGFHTKGY LFDHENYQTVIIGSANFTRSALLANYEWALKVSSKKQADLTAQLVDKIADLKQDSFVLNS AWLTDYRKNWVKPERVATDRHQTKILPNKMQKAALKQIEALVASGEKRGLVVSATGTGKT YLGAFAVKKYQPRRFLYIVHREQIAKKSLESFYRVIGGPRSDYGLLTGNRHNLQAKYLFA TVQTISQPEMLANFNSDEFDYILIDEAHRAAAPSYQRLLHYFKPNFWLGMTATPERMDEQ NVYQIFDYNLAYEIRLRDALEEKMLAPFHYVGVQDYEADGVVIDETTDLRYLASTSRVDY VLKELDYYGYCGTKAKGLVFCSRQDEARELARLFSQKGHPAVALTNEDNEKRRNEVVASL VKGEIEYIVAVDLFNEGIDIPALNQIVMLRNTQSSIVFIQQLGRGLRKYPGKDFTVVLDF IGNYKNNYMIPLALNQDTSRSKDQAKRETRLPSFIDVSTINFSKIASEKILASLDSVKLD GMRELRQSYHDLKNKLGRVPLLFDFYQYGSVAPIVFAQNHGLASYADFLGKMGEDVNLSK YENEVLSFVTKELLNGKRIHELLLLEMLLEQDIVKQEDYLAQLKRHHAYVNDELLASVDA ILSLDFFDIKQGKTTKKAQYGKLPLVERSNLFNYQLNGSLRSALDQHDFKNLFVDAIKTG LALNQEYDNQRQFTLYQQYDRKDACRLLNWPKDVSAPMYGYRVGEQDTPIFITYHKDDHE KRNALYRNTLADGRSLRWYTRVPRHLDSDEVQRLLNTRGMNLHIFVKRSDADGKQFFYLG KAKIQADSVREELLGVKKKPAVGMNLMLKHPLSESMHELLFE >gi|256541400|gb|ACPV01000074.1| GENE 5 6056 - 7417 1451 453 aa, chain - ## HITS:1 COG:L125001 KEGG:ns NR:ns ## COG: L125001 COG0531 # Protein_GI_number: 15673273 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 1 449 14 462 503 276 35.0 8e-74 MTSSMVISVDELAPFGKTGATALFYLLIAGIAWFIPITQMAGEMASIDGWEKGGIFTWVK GSLGDKTGWTAMFYQWIHITVGMDTMMYVIIGALSITFGTPWFNTTPIVRFILMMVILWG ATAIQVIGVRKIGRIAEWLFILGIATPVILLIISFFVYVIQGHPLHMTINWNTVIPHKLN GNTLVAFVPFMLAFCGGEASAPHVKNLDHIKSYSKVMLGLAVTAICFDLLGSMAIGMTVP KDQIENSTGFVYTYGKLLTSIGLPGDLLQKIVGIMLACGIIGELGNWIAGPNQGMYEAAK EGYMPKFFAKTTKHGVPLRIMVLQSSIVTISALLITFTSGADADFAFNVSLAATTAQYLM VYMIMLIAYMVLKRKHEDYHRMYYMSKNPNLSIAIAVLALIITVIAFFVTFVPAQGTPSN LRHVYVWTLIGMCAIVSILPLILYRWHEKWQSQ >gi|256541400|gb|ACPV01000074.1| GENE 6 7572 - 8399 822 275 aa, chain - ## HITS:1 COG:SP1845 KEGG:ns NR:ns ## COG: SP1845 COG0708 # Protein_GI_number: 15901674 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Streptococcus pneumoniae TIGR4 # 1 275 1 275 275 393 70.0 1e-109 MILISWNIDSLNAALTGTSARAEETRQVLTKIHDANPDIIAIQETKLRATGPTKKHKEVL AEKFPEYDYVWRSSEEPARKGYAGTMYLYKKGLTPAVSEPIIGAPEPMDHEGRIITLEFD KCFVTQVYTPNSGSGLKRLAERQVWDQKYIEYLQKLDEKKPVLASGDYNCAHTEIDLKHP ENNHHSAGFTDEERVDFTNLLNAGFTDTFRKVHGEITGVYSWWAQRVRTAKANNSGWRID YWLVSNRIADKVVRSEMIDTGKRADHCPILLEINL >gi|256541400|gb|ACPV01000074.1| GENE 7 8954 - 9514 861 186 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00053 NR:ns ## KEGG: LCRIS_00053 # Name: not_defined # Def: putative protein without homology, LPXTG-motif cell wall anchor # Organism: L.crispatus # Pathway: not_defined # 8 186 1 179 179 214 98.0 1e-54 MQSKKLIMFQIKDKTYPDGTKSTATVPVTVIAPNVPDVIYVPKGDKFPDPSTVVTNSNDI KDKIPDTTYTWKTTPDTPNTKVVINYKANNPGTPDTPVTPPVDPGDNPATPVTPPVKPEQ KPTTPTPHATKTPAKDNGGKKTVASEQKSTLPQTGKKDNVALTAIGVAIAAAGSLLGLAD SKKHRS >gi|256541400|gb|ACPV01000074.1| GENE 8 9453 - 9704 192 83 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00052 NR:ns ## KEGG: LCRIS_00052 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 83 1 83 83 141 98.0 6e-33 MHFKGESQQHFSLRKLTIGVASVIIGTTFMFFGGHAVHADDLSRDAEQTSSVVQKQSSEK IDVDAVKEADNVSNQRQDLPRRY >gi|256541400|gb|ACPV01000074.1| GENE 9 10062 - 11075 1564 337 aa, chain + ## HITS:1 COG:SA2346 KEGG:ns NR:ns ## COG: SA2346 COG1052 # Protein_GI_number: 15928138 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 321 1 322 332 222 37.0 8e-58 MTKIFAYAIRKDEEPFLNEWKDAHKDIDVDYTDKLLTPETAKLAKGADGVVVYQQLDYTP ETLQALADAGVTKMSLRNVGVDNIDMDKAKELGFEITNVPVYSPDAIAEHAAIQAARVLR QDKRMDEKMAKRDLRWAPTIGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFKN PELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKDGVVIVNCSRGPLV DTDAVIRGLDSGKIFGFVMDTYEDEVGVFNEDWEGKEFPDKRLADLIDRPNVLVTPHTAF YTTHAVRNMVVKAFDNNLKMINGEKPDSPVALDKNKF >gi|256541400|gb|ACPV01000074.1| GENE 10 11216 - 12385 371 389 aa, chain + ## HITS:1 COG:TM1336 KEGG:ns NR:ns ## COG: TM1336 COG0477 # Protein_GI_number: 15644089 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Thermotoga maritima # 16 357 17 359 390 85 26.0 1e-16 MLKKKSYFFSRAVGGLANSLFSMVFIWWLQTSTKSSFVVGIAEAIFSTTAALSIFYGPII DHYSFKRTSYYSILVQTVFLFATTIAVYQLSKSYILALICAGIVSVCDEFFNPADRAILK ETTADDQELNNLISKVSNIDQLVNVAGTALSGFLLTFLISANVMLICSLLSLISFVFLFY ALKEIKDRPKVKKAEAKYLNQILNGYKFIKTNYFLSHYFWSSILYSFVTPAMAILLPRIA QQNGQAGLYSMFYISFMIGFVIGATIAGRLSVRVKTIGFTWIASAVPLLLIIFFSNNWLI FTGLIFLFGLMTSIHNILAESLIQITADDEILGRVLTTIRTSTSIGGPISSIVAGILLDS SGETVLILACGFIILISGLNIFRAVNKAN >gi|256541400|gb|ACPV01000074.1| GENE 11 12430 - 13248 828 272 aa, chain - ## HITS:1 COG:lin0440 KEGG:ns NR:ns ## COG: lin0440 COG0561 # Protein_GI_number: 16799517 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 7 270 3 265 270 158 33.0 1e-38 MTQIPFKAVAVDLDGTFLTEKKTFDHALFAKVLRKLQANQIPFICATGNQLIRSHEYFDE FTNEVDYVSENGAILEADGKVFKRIAIDYDTAQKLLHFIQTEYPEAIIMVSAQHHCYILT SMDQADKDDIRIYYRDVQEIDQFTDIDPADAILKVCLTADDELAQVIQDRFNEKYGDCIR GTSSGNMTIDLVHKGINKAKGVDDMLKHYGIAQKDLIAFGDGENDIDMLKACGYSYAMKN ANAKAKAVAKYEAPTNDENGVLKVLAKYLDID >gi|256541400|gb|ACPV01000074.1| GENE 12 13446 - 15371 1549 641 aa, chain - ## HITS:1 COG:CAC0854 KEGG:ns NR:ns ## COG: CAC0854 COG0480 # Protein_GI_number: 15894141 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Clostridium acetobutylicum # 5 630 4 637 644 478 39.0 1e-134 MKKITTGIVAHVDAGKTTLSEALLYKAGNLRTLGRVDNGDAFLDTDQLEKKRGITIFSHE AKLTTDDLEITLLDTPGHVDFSAQTEETLSVLDYAILVISITDGVTSYTRTLWHLLKRYQ VPVFIFVNKVDAIGADRGMALVDIQKNLSESCVDFSKIDDEFYENVAATGDALLEKYLDS GAIYDQDVQNAIVQRKVFPIYFGSALKLTGITEFLAGFSKWTKEKEFSDKFAARCFKISH DAKGERLTWLRILGGSLKAKTELAGEKINQLRSYNGEKFATITEAAAGEIVAATGLTKTY PGQGFGVGDAPTALLKPVLTYKVNPQDNDLHACLKALQTLEDEDPQLHVTWSEHLQEIHV QVMGKIQLEILEQLMQERFGLNIVFEQGSILYQETITKPIEAVGHFEPLRHYAEVHLLLE PLPRNSGIVFENKCSLEVLTKNWQHQIMTALKSKEHLGVLTASPITDMKITLIGGKGSIA HSVGGDFREATYRAVRQGLMEEKIRQQTILLEPWYDFRLEIGKDQVGRALNDIQRMNGKF STPENIGERTVISGSAPVAEMQDYATEVRNYTHGEGNLECVVSGYLPCHNAAEIIEEKNY DPVSDLENTPNSVFCSHGAGHTVTWDKVPETAQYPYTYPLD >gi|256541400|gb|ACPV01000074.1| GENE 13 15454 - 16311 1007 285 aa, chain - ## HITS:1 COG:L66233 KEGG:ns NR:ns ## COG: L66233 COG0656 # Protein_GI_number: 15672250 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 5 285 2 281 281 325 59.0 9e-89 MELHSLTDTYTLNNGVKIPVIGFGTWQTPSGEVARESVEAALEAGYRHIDTAAAYGNEES VGEAIKRSGVNRHELFVTTKLWNSDHGYDKTKKAIDTSLEKLDLDYLDLYLIHWPNPVAM RDNWAELNAESWQAMEEAVKAGKIRAIGVSNFRKHHLDELMKTAEIKPVVNQSYLNPSDL QPEVTAASKEYDLLNEAYSPLGTGGLLGNEVVNAVAENYGKSPAQILIRWSLQHGFLPLP KSVHPKYIAANGDVFDFEISPEDMKKLDGLRGASKLANDPDEVNF >gi|256541400|gb|ACPV01000074.1| GENE 14 16424 - 17293 804 289 aa, chain + ## HITS:1 COG:CAC0294 KEGG:ns NR:ns ## COG: CAC0294 COG0598 # Protein_GI_number: 15893586 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Clostridium acetobutylicum # 123 285 149 312 315 75 26.0 1e-13 MLTNSQNIILKDQLTQNDIDHLIKKWDLDPTIFTYPNSSIEVARFIPIDSNKLKNGHLLV SFDLLSNDLPIEQELIPIFTIFDQNHLFIGTTRSLSELKPQENIIETIFQSLCIQIKHLH AELVTIKQKIDHLDQAARRTTKTKELKKVTDLTRQLVYLKHTLDDQTPSLEEFGNYLVEN KLANQARVKSIMTKQKRITKMIHVYTDLLNSISGLFTAMMDSHLNHLMKYLDSAALVIAL PALISGIWGMNVGGLPGKENENGFWILIIFVSLLTIGWGIFLKSKKYND >gi|256541400|gb|ACPV01000074.1| GENE 15 17290 - 17997 622 235 aa, chain - ## HITS:1 COG:BS_yfnB KEGG:ns NR:ns ## COG: BS_yfnB COG1011 # Protein_GI_number: 16077800 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Bacillus subtilis # 2 227 3 227 235 129 34.0 6e-30 MRYQQIIFDVDDTIIDFAATEDFALHSLFNAHHWPLSAELQRQYHSYNQGLWRQLEQGEL TYEELSEMTFHDFILDHFGIEIDGKKAMDEYRSYFGEAHQLLPGVEDTLKFAKKQGYKLT VLSNGEKFMQNHRLELAGVKKYFDLIVTSEEAHYSKPNLHAFDYFFSRTEIGPSETVFFG DGLQSDILGAEKYGFDSIWYNHRHRKNTLHLHPKFVVETYPELVKLMQNDFEKKY >gi|256541400|gb|ACPV01000074.1| GENE 16 18364 - 19356 1049 330 aa, chain + ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 2 322 14 339 344 262 44.0 6e-70 MKRLIGTIIALFAFLAVAFVSEVNKKNAEKKTPTVGILQTMSHPALDQIHRGIIQGLKDE GYVKGKNLKIDFQNAQGDQSNLKSMSDRFSQENATVTIGIATPAVQSLANTSGNIPVVMG AVSDPLGAHLVKSLAHPGGKITGVQDRQPIASQLALMQEILPKAKNIGVIYTSSDDSSAS EYREFRRLAEATGLKVIPYTITSTNDIEQVAQTMVGKVQAVYVPTDNTVASGIATLLKAT NSAKIPVFPAADTMVKSGGLATRCVSQFDMGILTGQMAGQILHGKNPAALPVRRVTHYET VINEKAAHELNITIPNSVIQAAQKKGRIIK >gi|256541400|gb|ACPV01000074.1| GENE 17 19353 - 20249 1040 298 aa, chain + ## HITS:1 COG:SPy1018 KEGG:ns NR:ns ## COG: SPy1018 COG4120 # Protein_GI_number: 15675019 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 3 285 1 281 289 250 53.0 2e-66 MSLITSSIGQGLLWGILALGLYLTFRILNFPDMTVEGTFPFGAAICVSALVHGVNPLAAT ILSFFAGMVTGLVTGLLYTKGKIPVLLAGILTMTGVYSVNLRILGKANVGLLNKNTLLNG QLLQKLPINFPTIVVGLIIAIIVIVLLAVFLDTDLGQAFIATGDNEKMAQSLGINTDNMK ILGLMLSNGLIGLAGGLLAQNGGYADVNMGIGTMVIGLAAIIIGEVVYGNLSLTARLVAV VIGSIIYRLILLLVLQLGFSTNDFKLISAIILAICMMLPLFEQKFRTRKLLKKGVEKP >gi|256541400|gb|ACPV01000074.1| GENE 18 20246 - 21007 192 253 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 233 1 217 311 78 28 4e-14 MSTILDLQNITTTVNAGTNEEKQILKNINLKLEDGDFVTLLGTNGAGKSTLLNIINGSIF PTSGKILLKDQDLTNLSEVKRAKYIAQVFQDPKMGTAPRMTVAENLLLATKRGEHRGLRL RGLDKHMQEFKRQAAQLPNGLNERLNTFVGNLSGGQRQTLSFLMATIKRPDLLLLDEHTA ALDPNTSRELLELTDKVVQEEHLTCVMITHQLKDAIKYGNRTIILNNGRIVFDVKGDDKK RLTEEDILQYFTD >gi|256541400|gb|ACPV01000074.1| GENE 19 21467 - 22801 1423 444 aa, chain - ## HITS:1 COG:NMB0388 KEGG:ns NR:ns ## COG: NMB0388 COG0477 # Protein_GI_number: 15676302 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Neisseria meningitidis MC58 # 2 442 7 448 451 570 68.0 1e-162 MEEKKTGLPTLASTTIWMISLGYLGVQIAFTLETSQMSRIFQTLGADPTKLGWFFILPPL AGLVVQPGIGSLSDRTWIPKIGRRLPYLLVGMIFAVITMILLPNVGSFGLGYGSIEALIF GAVAIAILDVASNMAMQPFKMMIGDMVNDEQKSYAYGIQSMLSNFGAVIAAFFPFLLTSL GVANTAKKGVVPQSVIISFYVGAAVLVITSLFTIFRVHEYDPETYARYHGIKESDNQEGG GWIELLKKAPKVFWQVSLVQFFCWISFQYLSTYATGAIAQNVWNTTNASSAGYQIAGNWF GVLTAVQSIAAVVWSYVLAKVPNNHHKLGYGISLLLGGVGYTSIFLIHSQGFLILSFILI GISWAGMNTYPLTMVSNALSGKHMGTYLGLFNCSICLPQIVASLLSFMIFPMVGNSMPAM MLITGISGFLGALSVLAIKETYVK >gi|256541400|gb|ACPV01000074.1| GENE 20 22985 - 23167 194 60 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLSLLLTLLLLWLFFKLGIGLIKIIGFLLVVGIMFFFFAYLLIPFLAIALAGSLLWATLK >gi|256541400|gb|ACPV01000074.1| GENE 21 23201 - 23773 361 190 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00035 NR:ns ## KEGG: LCRIS_00035 # Name: not_defined # Def: esterase # Organism: L.crispatus # Pathway: not_defined # 1 190 1 190 190 378 98.0 1e-104 MRVLLTGDSIIARQEGKNEPHLNWNLHQLLPDIEIENTAVSGINSGAFFAKLNELVLSVK QCDNLVILLGTNDLAMHKQVPARQFKQNMEIISSAIICQYYPPHVLLVSPPAVDEAKQRV RNNTLVAEYAQIVKEVAHEYHFRYADLAQAMRDTGDLSEICQGVKNDGLHFGDRGYEILG KLIAENLKQM >gi|256541400|gb|ACPV01000074.1| GENE 22 23773 - 24807 657 344 aa, chain - ## HITS:1 COG:lin0948 KEGG:ns NR:ns ## COG: lin0948 COG0628 # Protein_GI_number: 16800017 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 6 341 5 338 348 239 41.0 7e-63 MDTAWQKFKNNIPLRRFVVLLLIIACLYEIRAMMNTVLLTFIFTYVIVHLIHLVQRYFPK IPTGLIVAVTYLIILALLYFVVTIYLPMLVGQISKMVKSVMAFYESNESSRLASHVTRYI SKGEIVTQAKRVGTFALHTVTNFGSLTIATFMSLILSFFYTIELDRMIEFSKLFVKSGYF KWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMISLAFMHMPQIIALGLMVFILSL VPVAGVIISLIPLSIIGYSVGGIRYVIYIFIMIMIIHAIEAYVLNPKFMASKTELPIFYT FLVLLVAEHFWGTWGLIVGVPIFTFLLDVLGIKSAKKSKKKANK >gi|256541400|gb|ACPV01000074.1| GENE 23 25005 - 25637 741 210 aa, chain + ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 1 210 1 212 600 167 47.0 1e-41 MSKAKRYFGALALVSGAALSLVACGNNKNSKNNNADETHHKFSQTVPVKSVKKGGTLNYA IESDSPFTGIFLPELSDTATDSEVAEPGQEGLFSVNDQYKINNKGAATFKLDRKAKTVTI EVKKGVKWSDGKQVNAKDVEYAYEIIANKDSKSQRYTDSLADIVGLAEYHEGKSKKISGI EMPDGEDGRKVVIHFKQMKPGMLQSGNGYF >gi|256541400|gb|ACPV01000074.1| GENE 24 25689 - 26765 1155 358 aa, chain + ## HITS:1 COG:BH3636 KEGG:ns NR:ns ## COG: BH3636 COG0747 # Protein_GI_number: 15616198 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Bacillus halodurans # 2 344 245 588 610 252 37.0 8e-67 MSSDKVRKQPLFYGPFRVSKLVRGQSVTWERNPHYWRGTPNLEKVSMTVIGTNSVTQAIK SHKFDVAGVVNTQWDDVKNATDTNFIGKVPLSYNYLGFKVGKWDKKSGKNVENKNSKMDN PSLRKAMAYAMNVDAVAKRYYHGLAFRVNTLIPEQFGDYTDKSIKGYPYNLKKANELLDK AGYKKKGEYRVQPNGKKLVINLAVRNNSTTAEPVWRNYIQQWKKVGLDVKFVGGRPMEFN NWVQAVQSDDPRIDVFEGGWSLSSEPSPNDLYNEAAPYNFARFVSPKQTKLLADIDSEKA FNPTYRANAFKKWQKWMYDEAYVVPTTNQYSITAVNKKVTGWSLKPSANTWFTAGFVK >gi|256541400|gb|ACPV01000074.1| GENE 25 27392 - 28117 341 241 aa, chain + ## HITS:1 COG:SP0460 KEGG:ns NR:ns ## COG: SP0460 COG3464 # Protein_GI_number: 15900376 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pneumoniae TIGR4 # 5 218 169 382 422 114 32.0 1e-25 MSYRQLHFICLDGDNHQVVQILRTRYKKTLLKYFGRFSLQARANVKTVTMDLNFYYQDIV RACFPNAQIVIDRFHMIQMLTRSFNSLRVQVMKTFDKRSRQYQLLKSPWKLYLKKFDELE KVHPHYNWHYKDCLTQAQVVTEGINTSTTLENSYNLMQSFIQAVETGNTHELNLLINCQD QIGTLMHKTLLTFKHNLKAVLNGAKLPYSNGCLEGFNRKLNLSIRKKVDKNIVMFLSTFI L >gi|256541400|gb|ACPV01000074.1| GENE 26 28236 - 28847 659 203 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00029 NR:ns ## KEGG: LCRIS_00029 # Name: not_defined # Def: mucus-binding protein # Organism: L.crispatus # Pathway: not_defined # 1 203 1047 1232 1232 144 71.0 2e-33 EGYTPAPAQIDETTVNENTQDTTVEISYTANETPEQPDNSKDKGNNDNNGGNNSDAIVPI NPSDNNSNNSNNAPTDNKKTDDTKKDNTGKKITKETPKKVKNNKSNKTKSTTTSKSNQSS KAKRTTKSGTISPKAVALANTTAGLATSAKANMENGIAKNNSQNSQTLPQTGENESKVAF AVAGLLAAALGIFGIAINHKKEN Prediction of potential genes in microbial genomes Time: Wed May 25 05:34:51 2011 Seq name: gi|256541399|gb|ACPV01000075.1| Lactobacillus crispatus 125-2-CHN cont1.75, whole genome shotgun sequence Length of sequence - 4675 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 4, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 1803 1618 ## FI9785_1482 putative mucus binding protein 2 1 Op 2 . - CDS 1749 - 2681 820 ## FI9785_1482 putative mucus binding protein - Prom 2732 - 2791 9.9 - Term 2822 - 2865 1.2 3 2 Tu 1 . - CDS 3010 - 3171 63 ## LCRIS_00028 putative protein without homology - Prom 3263 - 3322 3.6 - Term 3300 - 3337 3.1 4 3 Tu 1 . - CDS 3365 - 3574 76 ## LCRIS_00026 putative protein without homology, LPXTG-motif cell wall anchor - Prom 3689 - 3748 6.4 - Term 3720 - 3772 12.4 5 4 Tu 1 . - CDS 3799 - 4572 638 ## COG4905 Predicted membrane protein - Prom 4604 - 4663 3.0 Predicted protein(s) >gi|256541399|gb|ACPV01000075.1| GENE 1 3 - 1803 1618 600 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1482 NR:ns ## KEGG: FI9785_1482 # Name: not_defined # Def: putative mucus binding protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 3 600 273 876 1356 738 68.0 0 MGGKYKTYDEWLSEGQDMSKINALKIGNNLKAGTNFVLTVPLKYIGRTDGTKQFNNVQVV DYGQPNANMVFDFIELHPEQIDTPEAPTTDKESVTTGIYNNPLATATDWYKTEHGEYVAY YTAKGKDGKTYVTGYVAANGKSESIINVDQIDLNTLEYHMIYRNGDEEVAAGISASFADG KTLVVDASRIGADGIRLKSQQGWSYNNGGYRENTSGRLYYSWEDFLKNHNGSVDNLVGIN MNASAFKPGDTIEVVVPVRYIGKLSDQVQSLEFKSEARKDVSVKLYFTTVRKDLSQVKQV VLLPTEFMGEQPGQSNWKLVKEIEKDMPNGWEAIKISNFPTYKGSFNMDSLPKGDLPSVV YGSAQYFVDLQEIQKIFANHGYTVKYANNNGKAQEMPFYGYVTLPLALIDGGGKPVAPSI WTIQVQAVPAIILNKDQHYVADPNAKPWDTTSMIDEIYAADDAGQRKTRDQLEKLPKTDV DISYEYQAPGAATAAPVDKVDLTKAGVYTVTYSHTYADGRVVKDSRKVYVDDVKQETKDI TRTIIVHEPNGTDQTVIQKATLTRKVILDATTGEIKSVGGWSTAKWERYSAPEFKGYTPA >gi|256541399|gb|ACPV01000075.1| GENE 2 1749 - 2681 820 310 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1482 NR:ns ## KEGG: FI9785_1482 # Name: not_defined # Def: putative mucus binding protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 26 295 1 273 1356 157 44.0 4e-37 MLERVPKYTLRKLSVGLASVMIGSGILMNSPKVLADTINPNEGTSTAVQPSSQDKDNSEP STQSGATQDENIDSNAAVQERSDNSVTEPATTTNAEEKVVATNTQDTTQDKDKQTNANET TQNTTNVDKKDTEVTPTNDATTATPKTTAKVNAPAAPTAMKAAATAETPDPTVPDNSANT AIINDKNSFEKIWLETSTARAQVYTTVKGTDQKVYVSSYAEFGKRLNSLIFTNRFDPNSL ELHIEYQVLKDRVQNFIVNWGDWLRLDTSRIGKDGLTFTTDTGEKVAYTLTPGWGGSTKP MMNGLVKAKI >gi|256541399|gb|ACPV01000075.1| GENE 3 3010 - 3171 63 53 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00028 NR:ns ## KEGG: LCRIS_00028 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 53 34 86 86 98 98.0 7e-20 MEEFFSRLETIGKAWHKAYDTIDSDTDRVIKRTKMDARTTLDLLEHLSPVQFS >gi|256541399|gb|ACPV01000075.1| GENE 4 3365 - 3574 76 69 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00026 NR:ns ## KEGG: LCRIS_00026 # Name: not_defined # Def: putative protein without homology, LPXTG-motif cell wall anchor # Organism: L.crispatus # Pathway: not_defined # 2 69 37 104 104 115 97.0 7e-25 MTNIIATPSTPETTEEEHLTVKDHVGSSTLRRGLPQTGEKKSTLNAGFALAGIGLALLAG MLFDPKKKH >gi|256541399|gb|ACPV01000075.1| GENE 5 3799 - 4572 638 257 aa, chain - ## HITS:1 COG:L191765 KEGG:ns NR:ns ## COG: L191765 COG4905 # Protein_GI_number: 15673533 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 7 165 2 159 235 167 50.0 1e-41 MPYTISEIIVLFFTYSVIGWLWETFYCSIKDHHYDYRGFLFGPYCPVYGFAVTTILICTK DVRDNLLLLFIVGTIVATIFEFVASWLLETIFHMKLWNYSKLWGNIQGRVAPMISLFWGV GVVLLVKFIQPIIQKLINNEEKITHGWLAVGITIVMGIDLVLTVISVERFHTTTKMWDVH INHFIERVRTKVESHMPEKGKLRVGDWHHSVMQHYDELQPQRLSWNHKRYLKSFPKLKVT DAPKFMEIKKEVLKKES Prediction of potential genes in microbial genomes Time: Wed May 25 05:35:07 2011 Seq name: gi|256541398|gb|ACPV01000076.1| Lactobacillus crispatus 125-2-CHN cont1.76, whole genome shotgun sequence Length of sequence - 3458 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 1066 986 ## LCRIS_00024 putative protein without homology, LPXTG-motif cell wall anchor - Prom 1110 - 1169 6.2 - Term 1137 - 1199 19.1 2 2 Op 1 . - CDS 1227 - 2366 938 ## COG0531 Amino acid transporters - Prom 2389 - 2448 3.6 3 2 Op 2 . - CDS 2452 - 2976 382 ## LGAS_0021 hypothetical protein 4 2 Op 3 . - CDS 2973 - 3173 158 ## COG1476 Predicted transcriptional regulators - Prom 3221 - 3280 8.5 Predicted protein(s) >gi|256541398|gb|ACPV01000076.1| GENE 1 1 - 1066 986 355 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00024 NR:ns ## KEGG: LCRIS_00024 # Name: not_defined # Def: putative protein without homology, LPXTG-motif cell wall anchor # Organism: L.crispatus # Pathway: not_defined # 1 355 1 355 355 577 98.0 1e-163 MKKLLIGSAVLAALLIKENIAVNAAIEQNETTPKIAVTDKKEKPKDQSDNSFAGHYDQET NFITWEIRLNPKKEKYTGDLKLENLIPEGLVLDPDTIEVIKNDNFIQNSSLVKLKKNKLT AEFPAKKYSESTILIKYRTKVEAEPNEPNYLRVSQSFTLGDDRVQEYEQEIKYDRSNKNF NIEAPHKSTFRDDNQISLIKKSKSNEERSEDWLKRLAELIINKKETTSDKGGEKVQGQVK DQKQQASPENTNLSRTPTVKGLTGFDTKANEVKSTAKIDSDSVKTTLDKDEIKDNASTIS PKSQKHDTHVTLPKSDTSETKAKLPKAGETAGVMLSVLGIILIIAGWTVRTKFLK >gi|256541398|gb|ACPV01000076.1| GENE 2 1227 - 2366 938 379 aa, chain - ## HITS:1 COG:MA2286 KEGG:ns NR:ns ## COG: MA2286 COG0531 # Protein_GI_number: 20091124 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Methanosarcina acetivorans str.C2A # 6 350 3 398 430 191 32.0 3e-48 MKKQNKTGSIGVVGATAIGVGGMMGAGLYTLLGLAANSAGVWLPVSFLIGGIVAAFSVYS YSKLGMKYPDRGGAAKFLLKEFGDGLLAGGMNVFQYIGWIIAMALYATGFAEYACQLLGK SSSGWLGKAISIGIVIVVVAINIMGSKQVARAQTAIIAFELLILLSFVAVGLTKLHVPTI TSSNSGNIVGILSAAGLLYVTYEGFGVVTNAAGSMVNPKNQLPQALFFSLGIVMVIYIVA SVVVVMTLGVQGAVANQGHVLATAGKLVLGNWGLFITSLIVCIFVVIFPLSAVGEMASLA FLLVYAMVNLGHLRIAGQTGAKRWILICSVVLNLALFALLFIQTILNHETLTWISVIALL IISFLVELAWRKKNKRNLH >gi|256541398|gb|ACPV01000076.1| GENE 3 2452 - 2976 382 174 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0021 NR:ns ## KEGG: LGAS_0021 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 3 174 4 172 172 63 25.0 3e-09 MRRESLWLKFVRYWYGIDSKLDERQLAEVERIGNNAYVISGIVELILLVITLIMALTIKS ELALWFLPLAIAIMMLMMSAYTYLTMRKFKIFSVEITADERPKAIRRIWIKAIIAGIIGA VFGTLGSALGASSVQNNLVNVLDFWPQGLWLGVCCGAGSAIGRVQRLKVIKEDE >gi|256541398|gb|ACPV01000076.1| GENE 4 2973 - 3173 158 66 aa, chain - ## HITS:1 COG:SP0333 KEGG:ns NR:ns ## COG: SP0333 COG1476 # Protein_GI_number: 15900264 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 63 1 63 64 92 73.0 2e-19 MNRVREYRKQKQISQMELARRIGVARQTINLIENDKYNPSLELCLNLAHALGTDLNTLFW DGDEAK Prediction of potential genes in microbial genomes Time: Wed May 25 05:35:16 2011 Seq name: gi|256541397|gb|ACPV01000077.1| Lactobacillus crispatus 125-2-CHN cont1.77, whole genome shotgun sequence Length of sequence - 6788 bp Number of predicted genes - 8, with homology - 7 Number of transcription units - 6, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 165 - 1025 301 ## LBA0087 putative protease - Prom 1221 - 1280 4.3 2 2 Tu 1 . - CDS 1425 - 2237 582 ## lhv_0078 transcriptional regulator - Prom 2299 - 2358 5.3 + Prom 2228 - 2287 8.1 3 3 Tu 1 . + CDS 2328 - 3164 540 ## LCRIS_01911 transcriptional regulator, XRE family + Prom 3238 - 3297 2.8 4 4 Op 1 . + CDS 3340 - 3501 87 ## 5 4 Op 2 . + CDS 3540 - 3737 68 ## gi|227878083|ref|ZP_03996070.1| hypothetical protein HMPREF0506_1071 + Term 3759 - 3788 0.5 6 5 Tu 1 . - CDS 3800 - 4039 300 ## gi|227878084|ref|ZP_03996071.1| hypothetical protein HMPREF0506_1072 + Prom 4184 - 4243 7.5 7 6 Op 1 . + CDS 4331 - 5347 824 ## gi|227877562|ref|ZP_03995622.1| possible S-layer protein 8 6 Op 2 . + CDS 5369 - 6265 695 ## gi|256843796|ref|ZP_05549283.1| predicted protein Predicted protein(s) >gi|256541397|gb|ACPV01000077.1| GENE 1 165 - 1025 301 286 aa, chain - ## HITS:1 COG:no KEGG:LBA0087 NR:ns ## KEGG: LBA0087 # Name: not_defined # Def: putative protease # Organism: L.acidophilus # Pathway: not_defined # 32 268 124 362 485 86 34.0 9e-16 MKKSKIIFLIELVLNIIAAVFLVINNSFKNLLDVGVVFLLLLLLIWNFLRRKIEISLKLS WLNLMILPAIFTYCLNTVANVLLVKYPVKSVLIAIIYSLLFLVYLLPVVITNAGLVKNKY ARVFIAMYYIVLLLFSENLHMNDYLSSFVNWSHSEILNGLALIPIIFCLFKSWDIRAKLN LKFRRYSNIQLIVLLVAVFFAAWYSFFHSYVYIAPTFSQLFWNWDFSEIIPTERAVLWSL GAILFEEGFRYLLIIVLLEVFKVQRGQIDYFLECAIFWIDTLCRTT >gi|256541397|gb|ACPV01000077.1| GENE 2 1425 - 2237 582 270 aa, chain - ## HITS:1 COG:no KEGG:lhv_0078 NR:ns ## KEGG: lhv_0078 # Name: not_defined # Def: transcriptional regulator # Organism: L.helveticus # Pathway: not_defined # 1 270 1 272 272 197 43.0 3e-49 MDIGTALRHLRDDLGLTQKQMIQGTKITVSHYSKLEKGQNRIFIENLVEILKQRNISLSY FVDHYLNDENSEKEVNYSEILNIAFYEKDKIAAEEIKRQIFSDKSSSNELRDRATLIVDM IDNQGQSNVDARIINSIFKHDNWTQYDEAIILLGNIIRTSNVLNMSPLVLTLIRKYKDLD KEKIEKQRRLATVGINYLFNFRKLSKEFNKTVLKIISWIKTTSIVPELGIIRELNAYFLA VYEGNISVSTNIKNVLKISGYQNLANDLPN >gi|256541397|gb|ACPV01000077.1| GENE 3 2328 - 3164 540 278 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01911 NR:ns ## KEGG: LCRIS_01911 # Name: not_defined # Def: transcriptional regulator, XRE family # Organism: L.crispatus # Pathway: not_defined # 1 276 1 275 277 241 43.0 3e-62 MTIGQALRKIRQNLDLTQKEMAANIVTRPFYAKVEAGKSRISADKLAAILFEHDVDITYF YQLLRATYTSKQKKIESDLNNKMEQAFNVGKIDEIESCYQEILSQSHSKILKLRAMISVA YLKNKLNQIDPKIKKDLFIEFNEGQNWMTNPELLRLFTNTMPLWEQDTLAFFINRLLNEM KSNKNISELEQERYLRVFENYLAVCYNRKLSKKSLQLMHVPKIIDYIMESKPTIHFLLYK IAALYLKNLFLNNKEEAQKIRNEVQKYGYQDLIKTWPK >gi|256541397|gb|ACPV01000077.1| GENE 4 3340 - 3501 87 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSKIKQSTLLILLVVLAVIAIVTTVVLKNTFLSSGHWLLGVPIRWTIPYLSWS >gi|256541397|gb|ACPV01000077.1| GENE 5 3540 - 3737 68 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878083|ref|ZP_03996070.1| ## NR: gi|227878083|ref|ZP_03996070.1| hypothetical protein HMPREF0506_1071 [Lactobacillus crispatus JV-V01] # 1 65 5 69 69 88 100.0 1e-16 MILATLKNRKRNRLFLTFEGIYAIILLFSVLFYFPLFILELKIQFILISTFYLISWGVAK FHKRS >gi|256541397|gb|ACPV01000077.1| GENE 6 3800 - 4039 300 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878084|ref|ZP_03996071.1| ## NR: gi|227878084|ref|ZP_03996071.1| hypothetical protein HMPREF0506_1072 [Lactobacillus crispatus JV-V01] # 1 79 1 79 79 102 100.0 1e-20 MTKEYEKEVKEAESVLEDQKLTDSEISQELISKDNPTENVKPSEIDFLRKKPNLTTQIDF TLLADLAGLSKEAKAEAAV >gi|256541397|gb|ACPV01000077.1| GENE 7 4331 - 5347 824 338 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877562|ref|ZP_03995622.1| ## NR: gi|227877562|ref|ZP_03995622.1| possible S-layer protein [Lactobacillus crispatus JV-V01] # 1 338 1 338 338 598 100.0 1e-169 MLQKKKVVKLLSTITLSSTLLLSATVVTSNEQANVVEASTKNVRLTHNAYVYNYKGNRIR GVKLLKKGKYVKAYRTKKIRGTKYLYIGSHHYIRLANVQNTKSNYLFTAKITDNGLGETY KAPNQSPTGEYIGVGQSVKVYAQEKVNDKIWYKIGDNKWILATDTDKFYTKRNSSKNCQK ADSQSITQQDNNSASNEQTYSNIINSNFANETEQSFVTQLNELRRSNGLAPLSIDNTLQS YAVTRANEANTKFDHIRPDGSRTQYAEVLAGGTVNDTSTPEQEASQQLRSFIYHDAGSNW GHRDILLSSQYTKIGVGFAFDPVLSNGFLGYSLIANLK >gi|256541397|gb|ACPV01000077.1| GENE 8 5369 - 6265 695 298 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843796|ref|ZP_05549283.1| ## NR: gi|256843796|ref|ZP_05549283.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 298 1 298 298 501 100.0 1e-140 MLQKKNVTKLLSTITLSSALLLSATVVAGNEQANVVEASTSSVKLTHNAYVYNYKGKRIK GARTLKKGRSVKAYRTKIIHGKKYLYVYAEKKDSRGKTWYKVGTNKWISSELTHKVSEPD TSKTSAITKSTSDETNTQSANSSNFIKHNETTNTKPNNEYTNIKDSDFATKLEQEFIAQL NQLRQSKGLNSLTLDTSLQEYARTRATEANTSFSHTRPDGSRTQYAEVLAGGAVDNTDTP STQAKICLNNFIYHDAGSNWGHRDILLSGQYTKIGVGIAWNPKSSNGFLGYRLIANLK Prediction of potential genes in microbial genomes Time: Wed May 25 05:36:14 2011 Seq name: gi|256541396|gb|ACPV01000078.1| Lactobacillus crispatus 125-2-CHN cont1.78, whole genome shotgun sequence Length of sequence - 33930 bp Number of predicted genes - 36, with homology - 34 Number of transcription units - 15, operones - 9 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 34 - 621 175 ## Lm4b_01117 hypothetical protein 2 1 Op 2 . - CDS 599 - 1915 706 ## LMOf2365_1118 hypothetical protein 3 1 Op 3 . - CDS 1896 - 2840 396 ## SLGD_00018 hypothetical protein 4 1 Op 4 . - CDS 2833 - 3711 253 ## COG0778 Nitroreductase 5 1 Op 5 . - CDS 3698 - 4003 208 ## gi|256843801|ref|ZP_05549288.1| predicted protein 6 2 Tu 1 . + CDS 3924 - 4178 174 ## 7 3 Op 1 45/0.000 - CDS 3981 - 4736 148 ## COG0842 ABC-type multidrug transport system, permease component 8 3 Op 2 1/0.000 - CDS 4741 - 5595 424 ## COG1131 ABC-type multidrug transport system, ATPase component 9 3 Op 3 . - CDS 5957 - 7186 766 ## COG0582 Integrase - Term 7193 - 7221 1.6 10 3 Op 4 . - CDS 7230 - 7409 180 ## gi|256843805|ref|ZP_05549292.1| predicted protein 11 3 Op 5 . - CDS 7411 - 7794 324 ## LJ1750 hypothetical protein 12 3 Op 6 1/0.000 - CDS 7794 - 8588 581 ## COG2946 Putative phage replication protein RstA 13 3 Op 7 . - CDS 8704 - 9366 511 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 14 4 Op 1 . - CDS 9488 - 10039 371 ## LJ1753 hypothetical protein 15 4 Op 2 . - CDS 10056 - 10496 447 ## LJ1754 hypothetical protein - Prom 10666 - 10725 9.5 + Prom 10494 - 10553 9.5 16 5 Tu 1 . + CDS 10678 - 11394 502 ## LJ1755 hypothetical protein + Term 11436 - 11475 4.1 - TRNA 11598 - 11670 84.6 # Thr AGT 0 0 17 6 Op 1 . + CDS 11845 - 12546 771 ## COG1285 Uncharacterized membrane protein + Term 12559 - 12592 3.1 + Prom 12557 - 12616 7.7 18 6 Op 2 . + CDS 12644 - 13873 1140 ## LCRIS_00021 hypothetical protein + Term 13896 - 13926 2.0 - Term 13875 - 13921 6.8 19 7 Op 1 . - CDS 13933 - 14190 168 ## COG2261 Predicted membrane protein 20 7 Op 2 . - CDS 14241 - 14432 271 ## - Prom 14470 - 14529 4.1 - Term 14489 - 14537 2.1 21 8 Tu 1 . - CDS 14580 - 15458 1271 ## COG1940 Transcriptional regulator/sugar kinase - Prom 15508 - 15567 8.7 - Term 15510 - 15555 -0.8 22 9 Tu 1 . - CDS 15589 - 17124 1060 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 17220 - 17279 7.6 23 10 Tu 1 . - CDS 17292 - 18221 1066 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 18247 - 18306 8.1 - Term 18270 - 18313 6.8 24 11 Tu 1 . - CDS 18331 - 19266 1086 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component - Prom 19361 - 19420 6.6 - Term 19402 - 19428 0.3 25 12 Op 1 16/0.000 - CDS 19434 - 20825 1554 ## COG0305 Replicative DNA helicase 26 12 Op 2 9/0.000 - CDS 20845 - 21300 759 ## PROTEIN SUPPORTED gi|227877551|ref|ZP_03995611.1| ribosomal protein L9 27 12 Op 3 . - CDS 21312 - 23333 793 ## PROTEIN SUPPORTED gi|194246575|ref|YP_002004214.1| 50S ribosomal protein L9 - Prom 23431 - 23490 6.4 - Term 23438 - 23474 4.0 28 13 Op 1 21/0.000 - CDS 23497 - 23733 392 ## PROTEIN SUPPORTED gi|58336363|ref|YP_192948.1| 30S ribosomal protein S18 29 13 Op 2 24/0.000 - CDS 23761 - 24279 599 ## COG0629 Single-stranded DNA-binding protein 30 13 Op 3 . - CDS 24329 - 24625 506 ## PROTEIN SUPPORTED gi|58336361|ref|YP_192946.1| 30S ribosomal protein S6 - Prom 24701 - 24760 7.6 - Term 24681 - 24736 -0.2 31 14 Op 1 24/0.000 - CDS 24842 - 27322 2598 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 32 14 Op 2 9/0.000 - CDS 27332 - 29296 2298 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 33 14 Op 3 9/0.000 - CDS 29297 - 30424 909 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 34 14 Op 4 6/0.000 - CDS 30433 - 30654 81 ## COG2501 Uncharacterized conserved protein - Prom 30771 - 30830 9.7 - Term 30806 - 30847 6.6 35 15 Op 1 16/0.000 - CDS 30871 - 32001 1157 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) - Prom 32039 - 32098 3.8 36 15 Op 2 . - CDS 32176 - 33501 1145 ## COG0593 ATPase involved in DNA replication initiation - Prom 33570 - 33629 7.7 Predicted protein(s) >gi|256541396|gb|ACPV01000078.1| GENE 1 34 - 621 175 195 aa, chain - ## HITS:1 COG:no KEGG:Lm4b_01117 NR:ns ## KEGG: Lm4b_01117 # Name: not_defined # Def: hypothetical protein # Organism: L.monocytogenes_Clip81459 # Pathway: not_defined # 9 192 4 190 195 82 39.0 9e-15 MSPILWLKIAFFITLFPGGIYLIIRRILSSHRKSITVYLITLVIVAIVNTIILKINFNRY IEIILILIIPFTYYFFEYVIRYKRFNILSFKANKTIIYVLVFFPIFEEVVYRFFIFKYCS VLGFSGIQAMIFATLCFEFSHIYYLGFKAINKLFFSFIQSMLFLVFQSLLLIICLHIIFN IYVYLHKKDMYKVIF >gi|256541396|gb|ACPV01000078.1| GENE 2 599 - 1915 706 438 aa, chain - ## HITS:1 COG:no KEGG:LMOf2365_1118 NR:ns ## KEGG: LMOf2365_1118 # Name: not_defined # Def: hypothetical protein # Organism: L.monocytogenes_F2365 # Pathway: not_defined # 1 438 1 437 437 455 54.0 1e-126 MINIKNNLEYNLLRQRILGGAITGIWKKDTFFIGESSYPVMNYNYITANFTNFEKFAFPG YVPPINYHLSGYGLSYNKALSAFLGESTERYSFSVLYQNIKHNIIYSDYQNLQKKYSNCY IVPLNYINIYFSKEDKENYITKKDPIRWIALNSLFDINKKVLVPLQFYIMYTNSIFKNEK RIVNSATSTGTASQESFDKSLENAIVEFLQIDSFNLWWYGGLRGKNLNIDTEGLLKELFP NNNRLWMFLKKFTVNFIDISFDKAINVVVCEITSNSDSKLPKYVVGVQGGFCLNKCIERS FFECVTVLEYCFTQSWVEGSKFKKISTNIDDLNVNNLDDNVLFYAKNGKPKLIKKENILR VSKKVTNLKDLLLNLKSISKYAGYLNITPPEFRNQNFEICRVFIPELLPISLPSYPPYYH PRYSKIGGIINNVPHPLA >gi|256541396|gb|ACPV01000078.1| GENE 3 1896 - 2840 396 314 aa, chain - ## HITS:1 COG:no KEGG:SLGD_00018 NR:ns ## KEGG: SLGD_00018 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 15 310 3 298 300 214 42.0 3e-54 MNSDTIFFVKKDTHINSNINEWILSKGIIHKSTLTISKNESSTLFVSLFKQLIQNQEIKV SEDDEEYSDFKKLVQLGFLGIRNKNKKVALIVEESAKNFFENYLKDENICVSSLDEFITQ DTLNILIEEKNNTKLNKIVQNYKNKYKDVDLIFVCSLYYENYLKGINKLTKLISIPYNIG FYDNNNIFATRIIHGETGCYQCLENQILQKFDGYIEDYVSEMDSEKQVFDIKNYGVLISI IKSEIEELNLYSDTELRGNVLHFYLPTYEYNFDKNRIQSDCSVCSTINNILFKEQNMKAC NILAEVLGNDKYQE >gi|256541396|gb|ACPV01000078.1| GENE 4 2833 - 3711 253 292 aa, chain - ## HITS:1 COG:SPy0739 KEGG:ns NR:ns ## COG: SPy0739 COG0778 # Protein_GI_number: 15674790 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Streptococcus pyogenes M1 GAS # 10 292 28 314 316 119 29.0 5e-27 MVEYELKGLFNQNTLSTSDISNNNNYNNQQLFDHIIRGNANSEMLTYLLNMNHQRLNDFK SMHQYNYGNFASLMNSVEQYNEIENDETILLPKPLRIKNKLQQVLKKRKSVRNYIGLSCD LRELSTILMYSFGISGRKENFGGIVASMRYYASGGALYPISVIIYINKVDGLKKGLYLYQ PMYHSLLPLNIKTQIDINKLFVGSNIDVKNSSFFVFYKYAISSTYLKYGELSLANILIEA GMMAQNFSLVTTACGFGSCPIAGYNKRFIEDICNLDHVNEHIIFTESCGRNE >gi|256541396|gb|ACPV01000078.1| GENE 5 3698 - 4003 208 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843801|ref|ZP_05549288.1| ## NR: gi|256843801|ref|ZP_05549288.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 101 1 101 101 154 100.0 2e-36 MLRRFSTSKDLRIGIEIIVGITLSFIINFIMISIGYAITNSEKLKEYSVNYFGLVIYKIK NYGNKGIPVSNNMMFIGIVLTIIFVFIVEWVVYKRDKNGRV >gi|256541396|gb|ACPV01000078.1| GENE 6 3924 - 4178 174 84 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MINDKVIPTIISIPILKSLLVENLRNIILPSINYVTNQTQKNKPDRITFKKWHIPFSLTN PDIIEIICQIFYWYVARNSTYNFR >gi|256541396|gb|ACPV01000078.1| GENE 7 3981 - 4736 148 251 aa, chain - ## HITS:1 COG:L120437 KEGG:ns NR:ns ## COG: L120437 COG0842 # Protein_GI_number: 15672516 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Lactococcus lactis # 7 243 9 240 241 59 22.0 8e-09 MAREILLSLKAQLRVPIAVFFSIFFPIIMMIMMMTSYGNFSLRNGYHFIDKYFFISTTIG ILPLTLISFPIDINNLLETKHYLRLKYLNVDLKKLFLSNIISYLIIVFISVGINLIVGKS IYNLRLPSIEYLCYFFIQLFYCAIVLLIFGLLLSLIVSDIKALMPVGMTIMFILFMVIGV FVQYSSLPKIIRTISSYIPVKYLANDFYYIWIGQAKWNMPFFKCNTIWLIFLCLICYIIY RRKNNVTKIFN >gi|256541396|gb|ACPV01000078.1| GENE 8 4741 - 5595 424 284 aa, chain - ## HITS:1 COG:L119676 KEGG:ns NR:ns ## COG: L119676 COG1131 # Protein_GI_number: 15672515 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Lactococcus lactis # 4 199 1 200 269 95 34.0 7e-20 MCLLRIKDLKVNFKDQTVLDFRGHDIEIKSGDKVALIGKNGAGKSTLLNCLLHEVKYTGC IKEKYHQSDIGVVFQENVYFKFLKVYEIFELVWNKPKKLILKSKFIKNFNLASIMNKYIS DLSGGEKQRLTIALVFSQNKKIYILDEINSGLDYDNRHELSKIINNITEEKTVIQISHYF EEVENWANKLIILDRGKMIYFGSLSKFYSINKHDSLIIINDKKSLSRLTQKPLNLYSNKY IVSSSIDERHDITNLLEQQKIDYKVVPQNLYTTYKLALVKHEDR >gi|256541396|gb|ACPV01000078.1| GENE 9 5957 - 7186 766 409 aa, chain - ## HITS:1 COG:BH3551 KEGG:ns NR:ns ## COG: BH3551 COG0582 # Protein_GI_number: 15616113 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Bacillus halodurans # 3 406 1 367 378 62 25.0 2e-09 MSITQIKTGKNKGKYRVRIQPTDNETGKTIPIPSKVTKTSSKREAKQLEEQMWVQYRAHK EMNLNVLDQPLAKALDHYVEEERSSGRWSSITTYDNWKYTVKLVSQYFGKKKVKDIKEKD MRSFARNYISTHKATVAPHSTLDRQLQNLRSYFATLKEYGVLKNPIPMKPLTKFFRRDEM NAPVKKYVFTNNEINVLKDRIYRELGVTRISYWTTRIAILIALDTGMRPQEIQALKWSQI TNDGSFKVFRINDSWNEKEKHLNGHLKSRPHGESRLTLPLSEPLLQLLNKFRHCQLELLK ENGLTNFNDRILLNITDYHLCALGYPITQKSMNDMLKQLSKKVGVNNQNLNISMYTCRHT VATKLGNTPGMSYPWAASRLGHSLKMFMRTYVHVDEDRNEEMLRLIAKR >gi|256541396|gb|ACPV01000078.1| GENE 10 7230 - 7409 180 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843805|ref|ZP_05549292.1| ## NR: gi|256843805|ref|ZP_05549292.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 59 1 59 59 113 100.0 3e-24 MFGTELLNARQIAEELGISYTYFFKLIKNGCPYHQLGDQGRKYYVLKEVQEWLLVSSQH >gi|256541396|gb|ACPV01000078.1| GENE 11 7411 - 7794 324 127 aa, chain - ## HITS:1 COG:no KEGG:LJ1750 NR:ns ## KEGG: LJ1750 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 7 126 6 125 128 126 52.0 2e-28 MTYEKFQYSKEWKILKELSKGQGLQELKQAQVDASLNRKINWFLYGGASGVITLIKEIYG DEALKKFYQFLDYFISNPDTLGHYYHSDKIKADTKTIADSTQGLNFGEYLEDLKRELVEG DKQKGRG >gi|256541396|gb|ACPV01000078.1| GENE 12 7794 - 8588 581 264 aa, chain - ## HITS:1 COG:BS_ydcR KEGG:ns NR:ns ## COG: BS_ydcR COG2946 # Protein_GI_number: 16077554 # Func_class: L Replication, recombination and repair # Function: Putative phage replication protein RstA # Organism: Bacillus subtilis # 36 231 47 228 352 59 25.0 7e-09 METMNNIKIDQLRLNIPYDEIYQVENSQSLPKKVIVADNLLHLAWLFKSNTVSHGHNGYT SSYNFGSGEQGGNISVMWNESRKDMGILVDFTATGKALYESLAELHGIPVNWKKIIEELY EKMGHISRLDIATDLINYGFSVNEIIQRLKNEESFFLNTQGNKINANRFKIIGSYSEAQT LYIGSRKSDAFLRIYDKKVEQDRADGLYRNLARNCNDWIRVEAEFKHRLAKELGKYITTL TADNIYPYLLGCVLERWSLVDREE >gi|256541396|gb|ACPV01000078.1| GENE 13 8704 - 9366 511 220 aa, chain - ## HITS:1 COG:CAC1871 KEGG:ns NR:ns ## COG: CAC1871 COG1674 # Protein_GI_number: 15895146 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Clostridium acetobutylicum # 10 191 212 391 405 115 38.0 4e-26 MSQCDCGLYIIDAKRADMYGLHQFLKDGKKVVASTTNQIARLLRVLNENMSARYEHFKNG KWGQDFAEYGYRPYLLVIDEVSAMLAGAGKNKKEIMGELRQVILRGRQAGIFTLISGQRI DATILDRDITLQLGTRIVMGQADSETYRMAYPMVNDIKALPLVPNKPGYGLIYSDGQKIS NPTPFVSPDMSNIDVPGVITRLENNFDPSKYIDESSYWEV >gi|256541396|gb|ACPV01000078.1| GENE 14 9488 - 10039 371 183 aa, chain - ## HITS:1 COG:no KEGG:LJ1753 NR:ns ## KEGG: LJ1753 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 183 1 189 189 146 40.0 3e-34 MKIKKLVLDTKNPLGNPNGVKMALGVTLLSSIGLEYKVAPQFINAGNYTALAYPFLINII PLGYPCWKWVNLHIVNYKIYKQLMNIVHSEQLIDYGDKKETTTFGERKVEYGVKIVYEET AEGTYITVYPNGIKHSDATQTLNNRLEETFNMNVLSVDHQLAYTKYLLRNVNRQRMEVSN DNF >gi|256541396|gb|ACPV01000078.1| GENE 15 10056 - 10496 447 146 aa, chain - ## HITS:1 COG:no KEGG:LJ1754 NR:ns ## KEGG: LJ1754 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 3 146 5 148 148 182 63.0 4e-45 MSSNVTKQGEVLSTFNESSSKRTPIQSALTRPLVEAIGKCFLLLSGTTEEVQDPNDESKT IPRAVYEVRVISSKTRLPIGTVLTVKIKGGKSVITDEENKKLLLGLEKNKVVAFDDLSHW NFNGNEGLSASGMRVLEVSPQEAMNL >gi|256541396|gb|ACPV01000078.1| GENE 16 10678 - 11394 502 238 aa, chain + ## HITS:1 COG:no KEGG:LJ1755 NR:ns ## KEGG: LJ1755 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 5 214 5 231 266 85 30.0 1e-15 MTPNRIKELREKNYFTQQDLSNLLKNKNISATRVTIARYEAGSRIPNEEVWKALAEIFKV PVSYVKGEGIRGEEVESKLINLLFSAYYDNNEELSNMKNNISHFLSINGDKDTADSFTKN DEDYKKKSYVINFWKDKFKFLFDKKFEESLEGANDLEMINNVNLVIRMQLEEIIMNQNDS NFIKDYKESNTKLMDEFYNKNNAYTLVPAIDHQIKILKEYRQSFLNHGYFENEKNGKQ >gi|256541396|gb|ACPV01000078.1| GENE 17 11845 - 12546 771 233 aa, chain + ## HITS:1 COG:CAC3658 KEGG:ns NR:ns ## COG: CAC3658 COG1285 # Protein_GI_number: 15896891 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Clostridium acetobutylicum # 10 228 7 229 229 175 41.0 5e-44 MQTLAPITTELDWLLRIVVAAFCGALIGYERAIQRKSAGVRTHIVVAIASALFMIVSKYG FTDLLSMHDIALDPSRIAAQIVTGISFIGAGTILVRKEQVSGLTTAAGVWATAAIGMAVG AGMYFIGILSTALLFIIQMIFHDDVIINKITPHVRFNIQIVAINQHHILSKIRQELADNH VENVTVKILDVSDNRIVLYVDGIINNKIDENSIVMNLRKYPDITRISYTRGGM >gi|256541396|gb|ACPV01000078.1| GENE 18 12644 - 13873 1140 409 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00021 NR:ns ## KEGG: LCRIS_00021 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 409 1 409 409 796 94.0 0 MAGTLDYLRWRGDLSFKERPFNSVDASLFASIIYLPVDKSAKEHTLSEVAEKLHVLPSFQ VQMKDLAGDQILLLPKSPRLGDIKILNWTNRLEKDPYPLQFTAATFRLNDNTIIIVYRGT DNSIIGWNEDMNMNYMPKVYGQDVAANYLKEMAAAFPHDKIYLAGHSKGGNYAEYALSVA EPKLQDRIIKAFSFDGPGFFHQVWKAPGFVRALPKMKTYLPEASIIGTMLDHPEHVLIVK STAPMVQQHDPRRWSVGRDSFVLAEGLTSGARSLRHFFIDFNHSIPEKQRGALWDALFQA FDELNITDIFQITAHKLLGTVRFSRVIMSLEPETRRYVLHMFGEIINALRGNISLPFSES DFALYPKSNDSNKAPIFFEFYDKTVPSLLPEEIKQRFLAEKENERKKLK >gi|256541396|gb|ACPV01000078.1| GENE 19 13933 - 14190 168 85 aa, chain - ## HITS:1 COG:SPy1265 KEGG:ns NR:ns ## COG: SPy1265 COG2261 # Protein_GI_number: 15675224 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 2 78 1 77 82 70 63.0 9e-13 MLSWIWVLIVGAIIGLIAGFITGKGGSMGFLANLIAGLVGSTLGQAIFGSWGPQMAGMAI VPSILGAVILVLVVSFVLGMLRKTE >gi|256541396|gb|ACPV01000078.1| GENE 20 14241 - 14432 271 63 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNKSDSGLKDKVIGKVKEVEGKITGDKSREVQGKAQQAKGKVKDKAKKLKDDLEKDHQID EDC >gi|256541396|gb|ACPV01000078.1| GENE 21 14580 - 15458 1271 292 aa, chain - ## HITS:1 COG:SP1721 KEGG:ns NR:ns ## COG: SP1721 COG1940 # Protein_GI_number: 15901554 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Streptococcus pneumoniae TIGR4 # 5 292 3 295 295 265 48.0 7e-71 MAEKKYVGSIEAGGTKFIVAVQDVETGKEVARDRIPTTTNKETLQKTAEFFKKHPVDALG IGTFGPIDINPNSRTYGYILDTPKPGWSGTDVKGFFEKELGIPVAMTTDVNASCYGEYVA RGRNDSKSYFYATVGTGVGAGIVQAGKLLGLNNHPEMGHMLVRRYPGDDYEGHCPFHNDA CVEGMSAGPSLEGRTGIPGEKLSRDNKVFTYSAYYIAQMLFNVYMAARPDVMIVGGSVLN EDDLVKVRKFFDEFNNNYVATPDLNELIVRPAVAHNGSATLGDFELAKNLLK >gi|256541396|gb|ACPV01000078.1| GENE 22 15589 - 17124 1060 511 aa, chain - ## HITS:1 COG:YPO1735 KEGG:ns NR:ns ## COG: YPO1735 COG1132 # Protein_GI_number: 16121992 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Yersinia pestis # 37 509 60 544 572 124 25.0 4e-28 MVITSAFASLDGVISPYVIGKITNTLSQKHFSEIPKILLLYLLMMLFLNVSFYLWQFCWG KITKSSNELLRSTAFNTFIASPSEKKITNTLNFINVNVKQIENQCIDSTIMLVYCVEQAI VSLVYILSINGIAAMVFLVCGLIPSVIPRLTRNWVQTGTKKWNSSYENYNQKTSDAVHGF DTIRHANGDNRFKIFVQKALMGEEKKYFLMNFRRNTSNFLAQVSYSLSMAISLAVGTFFV INGQILVGGLISLFLASDRLTSPIISIVNIANQLTSVSPLLKNKALQKSKKQEFNNLDFT KLPNQEKIIFDHCNLGYSNKAILKNINLTVSKGNKVLIIGRSGIGKSTLFKTLLNEIPLL KGKILVDDSLNQANFYTNFGIVSQDTYIFAESLRFNLTLGKDFPTQQVINVLKTVKLSYL ANEKSLDMQIGEKGLSLSGGEKRKLEIARALLNQKSILLVDEGLSGLDEESNKQIFALLQ SLPQTVIEIEHAVSPEEKNQFNQIIDLGAQY >gi|256541396|gb|ACPV01000078.1| GENE 23 17292 - 18221 1066 309 aa, chain - ## HITS:1 COG:BS_yviA KEGG:ns NR:ns ## COG: BS_yviA COG1307 # Protein_GI_number: 16080601 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 283 1 279 281 192 37.0 7e-49 MKIAVLTDSSAYLTKEQQEKYQIDVLPIPIIWGKKVYHDLVDIGYEEFYQKLNTAKELPT TSQPSIGDLKQKIDEYVAAGYTDVIVITLSSGISSYFSTVQSVAAEEDRIKVHPFDSKIT CAGEADYAMLAGRLIEAGADIDLIMHDLKDLQKTMDVRFMVDDLSHLKRTGRLSNAASFV GTLFKIKPILSMDVQNEGHISAIAKERQYKRAYKHVQNDFDNLTKNMPYKIQDTIFDSLD PEKKQEWLEDYQAKFPKYKFDTSIIGPVVGVHVGQGTMSMIWCRDLDTYFDENGQPIKGI ESQAVVDPE >gi|256541396|gb|ACPV01000078.1| GENE 24 18331 - 19266 1086 311 aa, chain - ## HITS:1 COG:SA0138 KEGG:ns NR:ns ## COG: SA0138 COG3221 # Protein_GI_number: 15925847 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 23 303 34 314 318 279 56.0 5e-75 MKFKKILVGACAVLAAVSLAACSNGKKSSSSSSEPKELNVEFVPSTQANKMEAKAKPLGT LLQKQLHIPVHVTVSTDYSGLVEAMSSKKVDVGFMPPYSYILAHKKGIADVLLQAERYGY DEPSGKMNHTLMHKYRGMIVVKKGSKIKSWKDLKGKKIAIGDPSSSSGYVYPVAELYKKG LNVTKDCKLVNVKGDDQEVLSVLNGDVDAAFVFSDARNIAAKDDKKAMTDVVPIYFTKWI PNDTIAVRKDMPKKFRVKLAKAFKNIAKSKKGKQIIESIYNHYGYVEAKDSDFDGLRQYQ KIVNKATGGSN >gi|256541396|gb|ACPV01000078.1| GENE 25 19434 - 20825 1554 463 aa, chain - ## HITS:1 COG:SP2203 KEGG:ns NR:ns ## COG: SP2203 COG0305 # Protein_GI_number: 15902010 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Streptococcus pneumoniae TIGR4 # 10 454 11 445 450 454 55.0 1e-127 MDNIVSQQIPHDRDAERAVLGAIFIDPEAIADASAVVQPEDFYERANQIVFQAMLDLSDR GDAIDTLTLQDELNKRNQLEDIGGIGYVSELAMATPTAAHVTYYAKIVHRKALLRRLISA SQKIISNAIDGSDDVTDILDDAESEIMNVSSENSTGGFRTIKEIVNSAINDINNIPDDGN MVTGLPTGFAELDKMTTGFHDDELIIVAARPGVGKTSFALNIAQNVGLHTEKSVAMFSLE MSGEQLVQRMLASEGLINSQHLRTGQLDEEEWRKLVVASGSLAGAQIFIDDTPGIKMSEI RAKSRRLAKEKGNLGLIVIDYLQLIEGPRSESRQQEVSAISRQLKKLAKELHVPVIALSQ LSRSVEQRQDKRPVLSDIRESGSIEQDADIVSFLYRDDYYRDEPDDGESSGSQDEVGAED DNGEVEVIIEKNRSGSRGTVKLMFSKPFNRFSNLDYAHDPNGN >gi|256541396|gb|ACPV01000078.1| GENE 26 20845 - 21300 759 151 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227877551|ref|ZP_03995611.1| ribosomal protein L9 [Lactobacillus crispatus JV-V01] # 1 151 1 151 151 296 100 9e-80 MKVIFTQDVRGRGKRGQVKDVPDGYAQNYLIKRGLAKEATKGNMNTLKRVEANEKAAYEA EKAEAEKIKAELEKDDTVVNFKSKAGTDSRLFGSISSKKIVEGLEKQYGIKVDKRKLNLP EPIKTLGYTNVHAKLFKGVEATIRVHVTEQD >gi|256541396|gb|ACPV01000078.1| GENE 27 21312 - 23333 793 673 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|194246575|ref|YP_002004214.1| 50S ribosomal protein L9 [Candidatus Phytoplasma mali] # 46 669 62 683 837 310 31 1e-99 MKDFLRKLELPEFIKDSRLTASIIIALSLSLLGSIIAMIMNPLFGLAMLLVFILTVAFAI YGTYILAGNANSFAVNLSYRIKRSEQEAMIKMPLGILLYDSDHQIQWVNPYLQLYLKSTD LVGHTIESVDPDLNKLLNEAIEAKTAENHLVDWDGHRFEMVVQNNLGVIYLLDITRYAKI EDKYKAERLAIGQIFIDNYDELSEAMHDQELTSMSSYVQNTLSDYAKKFNAYLKRIDEDH FLILIHMQELAEMEKDKFSVLDKVRQETSRNNTPLTLSMGIAFGSDSLSEIANQAQSNLD LALGRGGDQVVLRQPGKDARFYGGKSNPMEKRTRVRARMVSQAISELFKDADQVFVVGHQ RPDMDSVGSGIGVVKLARLHGVKANFVLDTNKTNYDVGRLVTLMQQKNQDKDIFINPDVA LAQVTDKSMLVMVDHSKYSITYSRSLYDRLKNRIIVIDHHRRGEEFPENPMLTYVEPYAS SACELVTEMIEYQQPANGKRVLTDIEATAMLAGIVVDSKEFSLRTGTRTFDAASYLRSIG ADSAVVSMLLKEDIDSFLERTHLVATLKMVKPHMAVLCGPDDKIIDPIITEQAADTALDL ENVGASFAITRRSDNTIGISARSMGKINVQIIMEKLGGGGHLSNAATQIKDVTIEEAKQK LLDAIDEYEKEND >gi|256541396|gb|ACPV01000078.1| GENE 28 23497 - 23733 392 78 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|58336363|ref|YP_192948.1| 30S ribosomal protein S18 [Lactobacillus acidophilus NCFM] # 1 78 1 78 78 155 100 3e-37 MAQQRRGGRRRRKVDYIAANHIDYVDYKDVDLLKRFISERGKILPRRVTGTSAKNQRKVA NAIKRARIMGLLPFVAED >gi|256541396|gb|ACPV01000078.1| GENE 29 23761 - 24279 599 172 aa, chain - ## HITS:1 COG:L0302 KEGG:ns NR:ns ## COG: L0302 COG0629 # Protein_GI_number: 15674172 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Lactococcus lactis # 1 172 1 166 166 161 56.0 4e-40 MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFVSCVIWRKSAEN FCNFTSKGSLVGIDGRIQTRSYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGYTP NSGNASSQPANNFPNNGGSQGNSQTNNNQNNSQDPFSGSGDTIDISDDDLPF >gi|256541396|gb|ACPV01000078.1| GENE 30 24329 - 24625 506 98 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|58336361|ref|YP_192946.1| 30S ribosomal protein S6 [Lactobacillus acidophilus NCFM] # 1 98 1 98 98 199 98 2e-50 MATTKYEVTYIIKPDVDEDNKKALVENYDKVIADNGGTMVESKDWGKRRFAYEIDKYREG TYHIMTFTADNADAVNEFSRLSKIDNAILRSMTVKLDK >gi|256541396|gb|ACPV01000078.1| GENE 31 24842 - 27322 2598 826 aa, chain - ## HITS:1 COG:SP1219 KEGG:ns NR:ns ## COG: SP1219 COG0188 # Protein_GI_number: 15901081 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pneumoniae TIGR4 # 7 815 2 811 822 1022 62.0 0 MDENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG MTTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHFLTLKQMLQYYLDHQ EDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISRFGLDD KQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILSKPERIDQIIYDELLDIQKR FGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRGGKGIKGMG VQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAYEIPEYGRAAKGLPVVNLLQLEKGEKV QTVINIPEGADDNYLFFVTKMGTVKRTHVSEFSNIRNSGLIALTLKDGDELSNVLTTDGK QNILIGTHLGYAVTFNEGDVRAMGRTAAGVRGINLREHDYVVGSGILGADDQVLVISEKG YGKRTPASEYPVKGRGGKGIKTANITEKNGPLAGVTIINSNNDVMVITTDGIMIRFRIDD VSQTGRSTMGVRLIKVSDDSQVASLTVVPTEEEQDQTGDDDDSKNG >gi|256541396|gb|ACPV01000078.1| GENE 32 27332 - 29296 2298 654 aa, chain - ## HITS:1 COG:lin0006 KEGG:ns NR:ns ## COG: lin0006 COG0187 # Protein_GI_number: 16799085 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Listeria innocua # 10 653 4 645 646 814 66.0 0 MADNSKANLEKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEII DNSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEKTGRPALETVFTVLHAGGKF GGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLDE HGTIVHFYPDPDIFTETIVFDDKILKNRIHELAFLNKGLTLTFTDKRKDTAETDVYKFEG GIKEYVAFLNKGQEVLFDDPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGGM HEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVKHPSPQFEGQTKTKL GNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEI ANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDR ILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPM IDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPSPKPTVQRYKGLGEMDPEQL WETTMNPENRRLDRVSPEYAKDADAVFELLMGNEVSPRRDFIQKNAKYVENLDA >gi|256541396|gb|ACPV01000078.1| GENE 33 29297 - 30424 909 375 aa, chain - ## HITS:1 COG:BH0004 KEGG:ns NR:ns ## COG: BH0004 COG1195 # Protein_GI_number: 15612567 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Bacillus halodurans # 1 369 1 367 371 325 45.0 8e-89 MYLDHFTVQNFRNLKKLDVNFDSNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNNDKDL IGFGGEFTNLLGHVHKSQVDLDLRVLITQKGKKVWINRVEQAKLSKYVGQLNAILFSPED LELIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLIQKNNYLKQLAKGKAKDQVFLDV LSDQLAGIAAEVVFRRFKFLKYLSHYASDAYAHISLGSEQLSIAYHPSVADIQADDSTEE IYQKILASYARNKASEIRKGTTTSGPHRDDIEFKLDGQNAHLYASQGQQRSIALSVKLAE IQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYIHGKTQTFITTTDLEGISWEIIKKPR VYHIQSGKISLEKEN >gi|256541396|gb|ACPV01000078.1| GENE 34 30433 - 30654 81 73 aa, chain - ## HITS:1 COG:BH0003 KEGG:ns NR:ns ## COG: BH0003 COG2501 # Protein_GI_number: 15612566 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 15 65 11 61 73 63 58.0 6e-11 MKVSIIKYFKVDGDHITLGQFLKEESIISSGGQAKWYLKDNPVTLNGELEDRRGKKMHVG DHVVVNGQEYEFR >gi|256541396|gb|ACPV01000078.1| GENE 35 30871 - 32001 1157 376 aa, chain - ## HITS:1 COG:SA0002 KEGG:ns NR:ns ## COG: SA0002 COG0592 # Protein_GI_number: 15925707 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Staphylococcus aureus N315 # 1 376 2 377 377 303 44.0 5e-82 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDKLTLTGSDTDISIEIQIPVN DDLNVESTGSIVLPARFFSEIVKKLPGKDFSFEVKESFQTQIISENSEFTINGLDANNYP RLPEIPDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPDKIKAVATDSHRL SQRTIALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLSFYSRL LDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDIENQSAKLS GKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVIMSFTKPLRPFIINPD KEDIEFVQLITPVRTY >gi|256541396|gb|ACPV01000078.1| GENE 36 32176 - 33501 1145 441 aa, chain - ## HITS:1 COG:BH0001 KEGG:ns NR:ns ## COG: BH0001 COG0593 # Protein_GI_number: 15612564 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Bacillus halodurans # 1 439 15 447 449 402 48.0 1e-111 MRARFNEVAYNAWFKNTKPISYNGKTHELKILVQNPVSKGYWEKNLSSQLIQSAYGYADI EILPVFKISEDADITERIVTPAPKRDAQVQQPNLPEKEFTKDLKLNEKYTFDNFVQGEGN KLAAGAALAVADSPGSFYNPLFIFGGVGLGKTHLMQAVGHQMLAERPNAKVVYIQSETFV NDFINSIKNKTQDKFREKYRTCDLLLVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMT SDRLPTEIPDLSERLVSRFTWGLQVEITPPDLETRIAILRRKAETEGLTIDDGTLNYIAS QVDTNIRELEGALVKVQAYATIEKADIDVNLAREALVDLKLVQKNRGLQISKIQEVVANY FQTSTAELKGKKRVRQIVVPRQIAMYLSRELTDASLPKIGQEFGGKDHTTVMHAYDKIDK QMKLDSDIKTAVFDLKQILEH Prediction of potential genes in microbial genomes Time: Wed May 25 05:37:09 2011 Seq name: gi|256541395|gb|ACPV01000079.1| Lactobacillus crispatus 125-2-CHN cont1.79, whole genome shotgun sequence Length of sequence - 17272 bp Number of predicted genes - 17, with homology - 16 Number of transcription units - 11, operones - 5 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 2 - 61 1.7 1 1 Op 1 . + CDS 84 - 242 233 ## PROTEIN SUPPORTED gi|58338218|ref|YP_194803.1| 50S ribosomal protein L34 + Term 244 - 272 -0.1 2 1 Op 2 22/0.000 + CDS 294 - 662 233 ## COG0594 RNase P protein component 3 1 Op 3 10/0.000 + CDS 664 - 1539 601 ## COG0706 Preprotein translocase subunit YidC + Term 1584 - 1634 2.5 + Prom 1566 - 1625 8.0 4 2 Op 1 11/0.000 + CDS 1650 - 3035 1318 ## COG0486 Predicted GTPase 5 2 Op 2 . + CDS 3043 - 4941 1854 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division + Term 4955 - 4994 3.2 + Prom 5018 - 5077 8.2 6 3 Tu 1 . + CDS 5310 - 7118 2405 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] + Term 7139 - 7174 0.4 + Prom 7126 - 7185 5.1 7 4 Tu 1 . + CDS 7333 - 7575 185 ## LCRIS_02018 hypothetical protein + Prom 7800 - 7859 5.6 8 5 Tu 1 . + CDS 7917 - 9320 1722 ## COG0362 6-phosphogluconate dehydrogenase + Term 9337 - 9386 10.7 + Prom 9331 - 9390 10.5 9 6 Tu 1 . + CDS 9423 - 10982 1524 ## COG0038 Chloride channel protein EriC + Term 10989 - 11022 3.1 10 7 Op 1 . - CDS 11092 - 11517 357 ## lhv_0083 putative prophage repressor 11 7 Op 2 . - CDS 11495 - 11821 234 ## LCRIS_00245 transcriptional regulator - Prom 11940 - 11999 10.8 + Prom 11899 - 11958 8.8 12 8 Op 1 . + CDS 12181 - 12498 175 ## lhv_0085 helveticin ORF 2 13 8 Op 2 . + CDS 12528 - 13463 1013 ## LCRIS_00011 bacteriocin helveticin-J + Term 13485 - 13525 9.4 + Prom 13493 - 13552 4.5 14 9 Tu 1 . + CDS 13600 - 14733 1346 ## LCRIS_00012 S-layer protein + Term 14776 - 14808 2.5 + Prom 14780 - 14839 5.3 15 10 Op 1 . + CDS 14867 - 15976 1020 ## LCRIS_02015 hypothetical protein 16 10 Op 2 . + CDS 16037 - 16189 218 ## + Term 16195 - 16233 7.2 - Term 16183 - 16221 3.4 17 11 Tu 1 . - CDS 16246 - 17211 789 ## COG0477 Permeases of the major facilitator superfamily Predicted protein(s) >gi|256541395|gb|ACPV01000079.1| GENE 1 84 - 242 233 52 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58338218|ref|YP_194803.1| 50S ribosomal protein L34 [Lactobacillus acidophilus NCFM] # 7 52 1 46 46 94 100 5e-19 MEVQFNMTTKRTYQPKKRHRSRVHGFMKRMSTSNGRKVLARRRAKGRKVLSA >gi|256541395|gb|ACPV01000079.1| GENE 2 294 - 662 233 122 aa, chain + ## HITS:1 COG:lin2987 KEGG:ns NR:ns ## COG: lin2987 COG0594 # Protein_GI_number: 16802045 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Listeria innocua # 1 117 1 116 119 98 44.0 4e-21 MRKSYRVKSEKDFQQVFESGDSVANRAFVIYKVEKTENKHFRVGISVGKKVGHTAVARNR LKRYIRAVIDEEKLQINPHVDFLVITRPYARDFNMAQVRKNLLHALSLAHIIEEMPDKVE EK >gi|256541395|gb|ACPV01000079.1| GENE 3 664 - 1539 601 291 aa, chain + ## HITS:1 COG:lin2986 KEGG:ns NR:ns ## COG: lin2986 COG0706 # Protein_GI_number: 16802044 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Listeria innocua # 13 291 12 287 287 221 41.0 1e-57 MKDILTKRNVKRLLAVLAVAILAVVLTGCATTGANGQATPISHTSGNWWDRWIVYYMSAF ILWLAKLMGNSYGWAIIVFTVIVRVILVPLNAISIRSTTKMQSIQPQINELRKKYPGRDT ESRTLLQQETNKLYKEAGVNPYTGCLPVLIQLPVMYALYGAILRTPQLQTGRFLWMDLSK PDPYYIMPILAMIFTFLSTYISQLSTPKSSQNGMTKVMMYGMSIMVGVMALNFQSAITLY WVISNLFQALQTFILQNPIKYRREQEAKAEAERERKRKLRRAYKRLGRKKK >gi|256541395|gb|ACPV01000079.1| GENE 4 1650 - 3035 1318 461 aa, chain + ## HITS:1 COG:SP1016 KEGG:ns NR:ns ## COG: SP1016 COG0486 # Protein_GI_number: 15900887 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pneumoniae TIGR4 # 7 461 5 457 457 511 61.0 1e-145 MAQTLTEFDTIAAISTPIGEGGISIVRMSGEDAIKIADEVFKGEDLSKVPTHTIHYGHII DPDTGKTIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSHGARMADPGEFT KRAFVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILNTLANVEV NIDYPEYDADTVTAKQMADTSRSVIDKINRLLKTAQEGKILRNGLATAIVGRPNVGKSSL LNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDKVEKIGVERSKKA LERADLVLLLIDASQALTAEDQALIEATKDKKRIVILNKSDLGQKITTTEMEKLTGSDVI STSILKEQNLDALEELINKLFFAGIENSNDQIMVTNQRQASLLHKAKKELEDVIQAVEDG VPVDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK >gi|256541395|gb|ACPV01000079.1| GENE 5 3043 - 4941 1854 632 aa, chain + ## HITS:1 COG:BS_gidA KEGG:ns NR:ns ## COG: BS_gidA COG0445 # Protein_GI_number: 16081153 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Bacillus subtilis # 5 632 3 628 628 826 65.0 0 MVKTYDSNEYDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKG TVVREIDALGGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPN LTLRQAIVDELVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNT TPSIKLSENLEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKIPRHFSYESRDEDYL QKQISCWMTYTNPTTHTIIRNNLDRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDRHQIF LEPEGKTTKEVYVGDFSTSMPEEIQLKMIHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHT LETKNVKHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDD LVTKGTNEPYRLLTSRAEYRLILRNDNADLRLTEYGHDLGLISDERFARFEEKKHAIEDA KTRLHEITVHLTDEVQEFLQSIGQEPMKAGVKADVFLRRPNVTIADIERLTGEKVPGDRY VKEQVEIGIKYAGYIKKEETRIARLKRQEAKKIPADIDYDQIEGLATEARQKFEKIRPET LAQAERISGVNPADLAILSVYIKNGRYSRVKK >gi|256541395|gb|ACPV01000079.1| GENE 6 5310 - 7118 2405 602 aa, chain + ## HITS:1 COG:L0199 KEGG:ns NR:ns ## COG: L0199 COG0028 # Protein_GI_number: 15674026 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Lactococcus lactis # 1 563 1 562 567 537 47.0 1e-152 MTKINGSDAMLKVIYDWGIDHIYGFPGGSFDSSMNAIYDFRDKMKFIEVRHEEAGALAAS AEYKLTGKLGVCFGSAGPGAAHLFNGLYDAKFDKTPMVAIVANVPTSRQDIDFFQAFDED KWFLNASVWCRQAKTAEQIPILTDEAIRQAYARKGPAVIIIPKDYGWQKIDDTFRVNKDA HPADNYPAPTKASVEEAVKLLKEAKNPTMYIGLGAKDAGEEVKEFAEKFKTPIMSSYLGK GVVEDKFPAYMGTIGRIGPKAAQEVQSATDLVVWVGNNSPFSVLWFPKNAKVIQIDVDSA KFGKRHSTDVSMLADAKKALRAIIDAGEERSESPLYKAAIADRENWDAWQASFKNSDEMP VRPEPIWDVINKKADDNAIFAIDVGNVNVDSCRLLNLHDDQKWTTSGLHATMGYGAPAAL TAATVYPDREVWQLAGDGGFAMMNQELLTMARYNMHVLNIVFTNETLGYIQAEQEDESHQ PLSGVIIPDNDWAKVAEGMNVKGVTVRTKKEFEDAVDEFKKMDGPMLIDVKYTHEMPYST ELNSLDDPAFVKKYQAEDLKPFSYFAEKYGLEADAATGASQHEESEPEEDPAPDTVSGAS QH >gi|256541395|gb|ACPV01000079.1| GENE 7 7333 - 7575 185 80 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_02018 NR:ns ## KEGG: LCRIS_02018 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 78 1 78 237 108 98.0 4e-23 MKSKKALISLLATALLAALFSASSVTANAADNSNSTAVAKFDKAITIKNIPRLSKWSYIV TVNSDSQPISVGKDSYQKCY >gi|256541395|gb|ACPV01000079.1| GENE 8 7917 - 9320 1722 467 aa, chain + ## HITS:1 COG:L0046 KEGG:ns NR:ns ## COG: L0046 COG0362 # Protein_GI_number: 15672604 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Lactococcus lactis # 4 466 6 471 472 461 49.0 1e-129 MQQFGVIGLSVMGKNLALNVRNHGFSVSGFSIDKPEVDAFAKYEDDKLKPCYTWEEFVNS LEKPRKILIQIMAGDPVDQTLQKLLPLLDKGDILIDGGNSNYHDTNRRFHEMEKHGIHFI GMGVSGGEEGALNGPALMPGGDEPAYKEVAPILEAIAAKNTEGKPCVYYMGPEGAGHYVK MVHNGIEYGIMQEFSEVYNLLRDVAHKSDDEMSEIFDKWNHGKVEAYLSEITSKVLAQKD DLTPDHVIDHILNVASYKGTGNWMLEDGVALGAPVTVVAEAVMARFMSKQAHLTIEKGVK PTKFEYNGEIPDDMVDVFEKSLQLAQAVAYAQGFQQLTMAAEAYDWDLRYKSIAQDWEAG CIIRSAMLKDIEKAYDKNGKLMNLFQDDYFRGLMKENLPALRKSVEFATKCGVPTPTLSA ALNWLESIFNPNLPANMIQGQRDYFGAHTYLRNDREGVFHTEWYEEK >gi|256541395|gb|ACPV01000079.1| GENE 9 9423 - 10982 1524 519 aa, chain + ## HITS:1 COG:L113400 KEGG:ns NR:ns ## COG: L113400 COG0038 # Protein_GI_number: 15673646 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Lactococcus lactis # 3 493 7 489 512 287 37.0 4e-77 MKDEANRTNIKLLLQALLVGICTGVVVGLFRFGIEKTSGFWLYLFQLAHQNPLWFIAIII GFIAVAVIAGYFVKQYPHVGGSGIPEVKLQLQGKLSLQWFPILWRKLIGGILVIGTGLFL GPEGPSLQLGSTIGQGVAQGCKQNKLKTRILLATGASSGLSAAFGAPLSGALFVLEEVFH NFSPLVWMNALAGAIASNFVVSNLFGIRHALAIQYNYSFPISLYWHLLILGILLGLLGHL YKVGLFSLKKVYAKITILPRWLHGLIPLAILIPIAYFWPLITGPGNRLILALPNIITKTG WGIVGMLALYYVMRIVFSIVAYDSGLPSGIFLPILTMGALIGATYGLMMVQLGLLPQRLV VNLVIFSMAGYFAAIIRAPFTAIILITEMVGSLLHLMPLAVVAFIALLVDELLGGKPIYG LLAAAMDKSSDHKANYTGQADTMALPVYESSRLVDKTISEVQWPVDTRVRTIHRDGDEII PNGQTVIRGGDMLILEFDSSQRGAVYSKMKDLQGVELDG >gi|256541395|gb|ACPV01000079.1| GENE 10 11092 - 11517 357 141 aa, chain - ## HITS:1 COG:no KEGG:lhv_0083 NR:ns ## KEGG: lhv_0083 # Name: not_defined # Def: putative prophage repressor # Organism: L.helveticus # Pathway: not_defined # 8 138 6 134 140 139 53.0 4e-32 MTTADQNKQELIDWLLAYAKKRDIMVELVEVNPTYPSISLKNYRFAVINTNWHHQEEVPF SIGHEIGHIMLTNGEVDSRQYITFTEQNSEESPADIFSIKLIYNYSCKMGDCFEDTGLFM QAYGIPNRVADATKEIFKRAA >gi|256541395|gb|ACPV01000079.1| GENE 11 11495 - 11821 234 108 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00245 NR:ns ## KEGG: LCRIS_00245 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 108 1 108 108 206 99.0 3e-52 MNLREVNDKAGLGRNSIYNWKNQRPGIDALNAVADVLHTSADYLSGKTNNPSPSPKGDET GGISIDGEVPYFYHGYTIPEDYLNIVRQLMERDIKKGLIKRHDNSRSE >gi|256541395|gb|ACPV01000079.1| GENE 12 12181 - 12498 175 105 aa, chain + ## HITS:1 COG:no KEGG:lhv_0085 NR:ns ## KEGG: lhv_0085 # Name: not_defined # Def: helveticin ORF 2 # Organism: L.helveticus # Pathway: not_defined # 1 105 1 107 107 145 75.0 6e-34 MDIHDYVELITLALWVISVVGIGILSRVHFKNKRLEQFRNTADSLMKSYVRLYDKENLSD EQKINRVGNAVVNSLEAKGFKLNRQEVQDIFAEVAKQMNEQTQDK >gi|256541395|gb|ACPV01000079.1| GENE 13 12528 - 13463 1013 311 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00011 NR:ns ## KEGG: LCRIS_00011 # Name: not_defined # Def: bacteriocin helveticin-J # Organism: L.crispatus # Pathway: not_defined # 45 310 6 291 292 278 54.0 1e-73 MLDATNIRILDRFDMNTGYRAVVQKGNVGSKYVYGLQLRNNQTETHVLRGFRGNVTTPVL TLVGAAAGHTQTWEYSGRSGKWFVGTKNKNKWASQIARADIRYKSYASSNTEFPRLAYLN RAGNPEDQCSGDEMERAEVAVSPDYSMLLIATIENNGTGHFSIYDLNVINNALDEAGNNG FVNMGNYQCETSFTVYGLYGSVLNSVQGYDLDNSGNIYITSQKSPSLSNGSWSYYHKEIV KIPFYARNDQSQWENVNLSAFGGLDISDEHSEVESIQIIDENHGYLTVAYHANVNGKNKT VSNKVYELAWD >gi|256541395|gb|ACPV01000079.1| GENE 14 13600 - 14733 1346 377 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00012 NR:ns ## KEGG: LCRIS_00012 # Name: not_defined # Def: S-layer protein # Organism: L.crispatus # Pathway: not_defined # 2 377 7 368 368 338 53.0 2e-91 MLISVVALMGTAPILSTTTSAHTVQADSSITKTIMHNALAYDKDGNSTGHKYYVYGSVHV DPKLVTINGSQYYKVTDKDEYIKVTNIDGVTRKITHNAYIYRTSTQRTPYGMTANSKKWK FYKGETVTTYGGSYKFKNGKRYFRVGGPRKQYIRSYNLGPVISTNTASNLTSNESNNATN TNAEEATVTVKNAYGVNIYDNQGKAIKKNLKAGTKFIVDKLEVTPFADHFPSTAAQAGMY RIKGTDNWLLAIDVTADKKLVKHDYDHEHYGYIKFVKDTDVYNADGTMQNHNGAKIVKQG GNLKVDKLIYIWVPSENKAELFYHLVGTKFYATGNVDQIEVGNDAYVKASDVKFVNIGLT LTPSNTAAEAEAAAQKK >gi|256541395|gb|ACPV01000079.1| GENE 15 14867 - 15976 1020 369 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_02015 NR:ns ## KEGG: LCRIS_02015 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 369 1 369 369 681 99.0 0 MNKLVQITLKADQEKYNLDGDASITVVDANSYYIGRIITQHHGWITFESVDQGGNLGGIV FIKEDQVAKIEDDTPNLRYYMITQVKDSFNLEQLNKTVLAWDFTNLHDLLINVADTQPFT TFEVNTGATYTGLITQLDQQEVRILERNELTLEHYATVIPLDDIVCVDTNAIDNRLFTQY LRQSQKQEFTNDLDLVEIYFDYTFDDQYGSFAIGKVLKYDDDNLVFESINELGQVESIAV IARSHITHITEDSERLLFFNFLVQWQKNNGSFDPDRLERSVKLRDEIQSPAEIIDNWPED QIVKISDSIYHYPDRLGLIEDRSDSGFDLKIVTEYGLGDTSVHDYSDLISVDLAGSEMIK MQQFIDNEG >gi|256541395|gb|ACPV01000079.1| GENE 16 16037 - 16189 218 50 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGLTFDNPNNLQKMLDRFATVPDPKKTPKHKDPEELLNKDSKDKKKKDKK >gi|256541395|gb|ACPV01000079.1| GENE 17 16246 - 17211 789 321 aa, chain - ## HITS:1 COG:RSc2112 KEGG:ns NR:ns ## COG: RSc2112 COG0477 # Protein_GI_number: 17546831 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Ralstonia solanacearum # 2 314 120 429 442 133 31.0 4e-31 MIAVDYTVGNALLTEWLPKGEDSKRQSHLLIYWTIGFILSYLAGSFITGFDSYTWQIILA TSAVPALVTAIFRSLFPLPASPGWLASKGKIKTANKVIRKHMGRKWRLPARFMKRNKKKT PRNISWAILFSKQYLRRTLVGGIFYACQAFSFFGISIFLPILLQSMNITSGNISGIIYNG GMFIGVLIGTWIFNKVSRRFYLISNFLISGLLIGILAIVPNLNSILKLGIFTLFAIILSA GLILDYPYPTELFDLKVRATGVGTCITISRIGAAAGTFLLPVLTNVGGASLAMLVCAIVL LFAFIVCLIWAPETSPQFMKK Prediction of potential genes in microbial genomes Time: Wed May 25 05:37:42 2011 Seq name: gi|256541394|gb|ACPV01000080.1| Lactobacillus crispatus 125-2-CHN cont1.80, whole genome shotgun sequence Length of sequence - 10278 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 7, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 328 193 ## LCRIS_02013 major facilitator superfamily permease - Prom 369 - 428 8.0 - Term 407 - 453 5.8 2 2 Tu 1 . - CDS 454 - 1008 722 ## LCRIS_02012 hypothetical protein - Prom 1233 - 1292 4.4 + Prom 1005 - 1064 5.6 3 3 Tu 1 . + CDS 1101 - 1745 575 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - Term 1692 - 1725 1.4 4 4 Op 1 2/1.000 - CDS 1737 - 3677 2347 ## COG2217 Cation transport ATPase 5 4 Op 2 . - CDS 3677 - 3964 370 ## COG4633 Uncharacterized protein conserved in bacteria 6 4 Op 3 . - CDS 3977 - 4354 473 ## COG4633 Uncharacterized protein conserved in bacteria - Prom 4398 - 4457 11.4 + Prom 4399 - 4458 12.3 7 5 Op 1 . + CDS 4543 - 5388 568 ## LGAS_1061 XRE family transcriptional regulator + Prom 5405 - 5464 2.8 8 5 Op 2 . + CDS 5536 - 5949 470 ## gi|256843854|ref|ZP_05549341.1| predicted protein + Term 6133 - 6172 -0.9 + Prom 5954 - 6013 3.2 9 6 Op 1 . + CDS 6186 - 6350 82 ## gi|227878319|ref|ZP_03996277.1| hypothetical protein HMPREF0506_1278 10 6 Op 2 . + CDS 6364 - 6879 439 ## gi|227878318|ref|ZP_03996276.1| conserved hypothetical protein 11 6 Op 3 . + CDS 6888 - 7697 617 ## LCRIS_00641 transcriptional regulator, XRE family 12 6 Op 4 . + CDS 7799 - 9367 1204 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 9478 - 9529 13.2 - Term 9462 - 9521 6.5 13 7 Tu 1 . - CDS 9551 - 10276 670 ## LJ0255 hypothetical protein Predicted protein(s) >gi|256541394|gb|ACPV01000080.1| GENE 1 1 - 328 193 109 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_02013 NR:ns ## KEGG: LCRIS_02013 # Name: not_defined # Def: major facilitator superfamily permease # Organism: L.crispatus # Pathway: not_defined # 1 109 1 109 454 204 99.0 9e-52 MENNEKIIQEKKREKFIKTKKNYKRAPLMSVHLRVMMAVILGQIACGYSLGISGTALSNA AKYINISDFWTGLIGAGALIGLAGSLLVGLLSDKIGRRKLLMWNMYILA >gi|256541394|gb|ACPV01000080.1| GENE 2 454 - 1008 722 184 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_02012 NR:ns ## KEGG: LCRIS_02012 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 184 1 184 184 348 98.0 6e-95 MTKYIAHIEPLNAKKIGTKAHGTATFEKKGDQLHIHVEMFDTPANIEHWEHFHGFPNGQK AHVPTAAQDVNHDGFIDLPETEPVSGTTMVPLDDAPENMNIPHDGYPVADSNGHYEYEID VSLTKLQKKFKAAFGSDKLQLDKRVVYVHGVPADLELPDTVGGCVMSYDAHTTLPIAAGE IEKA >gi|256541394|gb|ACPV01000080.1| GENE 3 1101 - 1745 575 214 aa, chain + ## HITS:1 COG:DR2362 KEGG:ns NR:ns ## COG: DR2362 COG0664 # Protein_GI_number: 15807353 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Deinococcus radiodurans # 9 204 10 209 231 89 30.0 6e-18 MQHSPMACIRKAAIFKNLPNEMLEKLVPISTHQEYFPKGSIIRQPGDGKNGMLFMDQGSA KIYNLNEDGKETVLGVLNQGDANGQQNLFQEHAQENFVQALQDTYVCSIERRDFQKLLKK TPDLALNLLNNFGEQLVTIETNSIRRNSMDAQERLMAYLQDLAQKQGSKNVELKLKKKDL ASYLGITAETLSRKLKNLQKENRIKISGRRIILL >gi|256541394|gb|ACPV01000080.1| GENE 4 1737 - 3677 2347 646 aa, chain - ## HITS:1 COG:SP0729 KEGG:ns NR:ns ## COG: SP0729 COG2217 # Protein_GI_number: 15900626 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 3 637 18 659 660 724 61.0 0 MKLSNIKRFWISFILAIPMLIQMFAMPFHWMMPGYNWIAFITTTIIMAISAAPYWSSAWA AFKHHNANMNTLVAVGTSVAYFYSIFAMFTGREVYFESAAFVTVFVLLGDAMEEKMHNNA SNALAKLIDLQAKDAEVERDGKFIKLPLDQVKVGDIIRVKPGEKVPVDGVIVDGSSTLDE SMVTGESMPVTKKKGDDVVGSTINTNGTFTFKATKVGSDTMLSQIVDLVKKAQTSHAPIQ NLTDKISNIFVPVVLIIAIITFVIWYVFLGATLVNAMLFAVSVVVIACPCALGLATPTAL MVGTARSAKMGVLIKNGEVLEEVSDIDTVVFDKTGTITVGKPQVTNVVGDKNKVLTIAAS LEENSEHPLATAVVKAAKEAKTEIKSIQNFAAIEGRGVKANYGNQEAFVGSDRLLEDISI SQEMKDQALQLQKEAKTVVYVGLGNDIIGLIAIQDVPKASSKQAIAELKKRGLKTVMLTG DNQNVAEAIGREVGIDQVIAGVLPTEKAAEIKKLQDEGNKVAFVGDGINDAPALSTADVG IAMGSGTDIAIESGGIVLVQNDLMGVVRALEISKKTFNRIKLNLFWALIYNTIGIPIAAG LFMAFGLQLSPELAGLAMAFSSVSVVTSSLLLNKTKIAGETAQVSK >gi|256541394|gb|ACPV01000080.1| GENE 5 3677 - 3964 370 95 aa, chain - ## HITS:1 COG:alr7636 KEGG:ns NR:ns ## COG: alr7636 COG4633 # Protein_GI_number: 17158772 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Nostoc sp. PCC 7120 # 20 95 99 174 303 61 35.0 4e-10 MSIFSKNQTKKVVVNAENHGYKPNTVTFKQGKPAQLKFIPSDNMGCMNEVVSKDLNFDQK LDGKKEVTIDIPTDKPGTYTYACGMDMFRGKVVVK >gi|256541394|gb|ACPV01000080.1| GENE 6 3977 - 4354 473 125 aa, chain - ## HITS:1 COG:SP0728 KEGG:ns NR:ns ## COG: SP0728 COG4633 # Protein_GI_number: 15900625 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 7 125 5 123 123 114 44.0 6e-26 MDVTKIIILVVAIALIGFILWWFFGKHDEAIGKASVNQGTQEANIVVNGGYSPSTIVLKQ GVPAKVNFDMQDSTACLSHVVFEQLGVDKDLTKQKVTTVDIPTDKKGTYNFACGMDMFHG KVIVK >gi|256541394|gb|ACPV01000080.1| GENE 7 4543 - 5388 568 281 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1061 NR:ns ## KEGG: LGAS_1061 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: L.gasseri # Pathway: not_defined # 1 271 1 264 272 130 32.0 4e-29 MTIGEALKQTRKSMKLSQTEMAGDVLSTSYYSKIERGLNDIQTQDLIDLLKQHGLQASIF LERIENEDSENDLAHKNLIWQKQLEDAYYHQQIERLEDLKIEIGKYKNQSQNIFNLYALV VFSIASLKKQIDQISENIKRQVRQIVFDSDEWSESTLQIFAMTMMIYAPEDMDFLINSIF RTYRHNVSNLSGQLQEIMSAIAINYLANVYVQRRKIDLNLIYDFISKLPEIPRNAFAKIV ANYYHYCFDGKNEEVDQIIEFMKSNGMSHLIKNFIVENCHL >gi|256541394|gb|ACPV01000080.1| GENE 8 5536 - 5949 470 137 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843854|ref|ZP_05549341.1| ## NR: gi|256843854|ref|ZP_05549341.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 137 1 137 137 246 100.0 4e-64 MKRNKKILTLTAKAALALSLVSVSTSALVQSNHVQAATQSTESKGFVEHIWYQRQYYHDQ GTYVYYTVRRGNEVFRGYLEKMYTVPMGHNPTGIMYGGYLYNTKLKSYPIPTLASKKKMM TNFVVNDNEQLGNENKQ >gi|256541394|gb|ACPV01000080.1| GENE 9 6186 - 6350 82 54 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878319|ref|ZP_03996277.1| ## NR: gi|227878319|ref|ZP_03996277.1| hypothetical protein HMPREF0506_1278 [Lactobacillus crispatus JV-V01] # 1 54 1 54 54 96 100.0 4e-19 MEIPYNDGTYNGYLQRERMYEEYSNGKVRWVVYYGGTVRLVSHGLITFQKKADR >gi|256541394|gb|ACPV01000080.1| GENE 10 6364 - 6879 439 171 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878318|ref|ZP_03996276.1| ## NR: gi|227878318|ref|ZP_03996276.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 171 1 171 171 310 100.0 1e-83 MKKKATIITVVVVVVLAVGGWLFYRNQQTIPEQFANKNLTTYDPHQTDSVMENHLGMLVN IALGKNSGQIDASSPVFKTDASGTYKYIKPNTAAAKAIYKVYGHNSYDPKDYNNKINSEK LGRVRVTMEGKNSWTLHSKKLTLKFHKTSDGHWATSDGTIWFVSKRDRKLK >gi|256541394|gb|ACPV01000080.1| GENE 11 6888 - 7697 617 269 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00641 NR:ns ## KEGG: LCRIS_00641 # Name: not_defined # Def: transcriptional regulator, XRE family # Organism: L.crispatus # Pathway: not_defined # 1 269 1 269 269 454 93.0 1e-126 MEINTALKKARQSRGLTQEQFVAGILSPAHYSKIERGLHEISAKDLMAILQKNKISFDEF FKQNSVAQADDENNLGDQLQTAYYNQDFNQVRKLVTEIQQLPHHDLLKIKAKLILTLLEG KRKFDVKDKNIVLQRLFAGDNWLQDKFSLDLLANFGTSIFTHDDFAFFFQKILTTYNDKM SEQTEKMQTTIATICVNYLYTCAENKFVKDNKEPIYLLGQLSQTPSLVLYKIIGHFYQCY FAGDTEQVLAIKKLIKASNLENILSILPE >gi|256541394|gb|ACPV01000080.1| GENE 12 7799 - 9367 1204 522 aa, chain + ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 74 521 81 534 535 155 26.0 3e-37 MKKFIDLKWFSLSIILSCLSGLSLSFSTWSYSEIFALITGKSIPNTVRMIIVITVLQILL VIVEYLNNRVINRNVALFNQEVREYLMQTDFVKTGEKEISNRISFINNDLNLIEEKYFRQ LFSLVSTVVKIVGIVTIALINSVVLTLVFVAFASLSSLIPSLFSKKTANQSSNWSKSTGS YVTFMSDLLKNINTVLNYNVLSLFVKKGSKVIKNSVENKRERDDTIAKSDFYVDLLAYSL DFLPIGIGIIMVIQGHIALASFVAVQYSSAWIVNSFFSINSIRNQIAATKPMTAKLLSFK PLTTKQDEAPVKFKQLNMYNVTFGYQADSPVLNNVSLCVNKGDKILLTGKSGEGKSTLLK VLMGKLSPQKGRVLVNDQAVETQIFSEVQQSSQIFNVTLRFNLTLGKQFDQKQIVAAAQQ AGLTNYLQKHGLDTVIEENGHNLSGGERKRIELARAFLFQREILVVDEGTASLDPQTAEQ IHNVFLNSPLTVIEIDHHISSTTMKKFTHHFDLENGKLVNIF >gi|256541394|gb|ACPV01000080.1| GENE 13 9551 - 10276 670 241 aa, chain - ## HITS:1 COG:no KEGG:LJ0255 NR:ns ## KEGG: LJ0255 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 3 240 6 236 237 140 39.0 4e-32 KIKKVLLTTSLLTISLITLSGCSFHLFTNKNSGPTIKRTLSSKKFNSLKVASDITDVELH ASNQYKVIYHGLKRFKPSVNVKNGQLKITQTSNGVSYNIKEGNTVAIYLPAKELQNININ LSDGDIDADGKVQAKNVKLHSDDGDVNFDDLRISSGKITSDDGDISVSNLLTRKGATVES DDGDIRIRKSNASGYRLTSDDGDVTFKGDTSDNDDGGSYYKNTKSSNLLSAHSDDGDVNV N Prediction of potential genes in microbial genomes Time: Wed May 25 05:38:21 2011 Seq name: gi|256541393|gb|ACPV01000081.1| Lactobacillus crispatus 125-2-CHN cont1.81, whole genome shotgun sequence Length of sequence - 8730 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 7, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 56 - 92 4.3 1 1 Tu 1 . - CDS 106 - 1416 1572 ## COG2252 Permeases - Prom 1522 - 1581 4.7 + Prom 1484 - 1543 6.6 2 2 Tu 1 . + CDS 1570 - 2343 839 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 2347 - 2386 -0.2 - Term 2333 - 2374 4.0 3 3 Op 1 . - CDS 2381 - 3634 1064 ## COG1373 Predicted ATPase (AAA+ superfamily) - Prom 3660 - 3719 4.9 - Term 3681 - 3722 0.9 4 3 Op 2 8/0.000 - CDS 3723 - 4100 271 ## COG2207 AraC-type DNA-binding domain-containing proteins 5 3 Op 3 . - CDS 4104 - 4700 347 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 4721 - 4780 1.6 6 4 Op 1 . - CDS 4907 - 5101 182 ## COG0300 Short-chain dehydrogenases of various substrate specificities 7 4 Op 2 . - CDS 5064 - 5507 537 ## COG0300 Short-chain dehydrogenases of various substrate specificities - Prom 5579 - 5638 5.8 - Term 5625 - 5660 5.3 8 5 Op 1 . - CDS 5690 - 6022 207 ## LCRIS_01999 cytosolic protein 9 5 Op 2 . - CDS 6012 - 6278 246 ## LCRIS_01998 DNA-damage-inducible protein J - Prom 6374 - 6433 6.0 - Term 6359 - 6391 2.5 10 6 Tu 1 . - CDS 6447 - 7757 1488 ## COG2252 Permeases - Prom 7792 - 7851 7.5 + Prom 7769 - 7828 7.8 11 7 Tu 1 . + CDS 7941 - 8666 543 ## COG0789 Predicted transcriptional regulators Predicted protein(s) >gi|256541393|gb|ACPV01000081.1| GENE 1 106 - 1416 1572 436 aa, chain - ## HITS:1 COG:BS_yebB KEGG:ns NR:ns ## COG: BS_yebB COG2252 # Protein_GI_number: 16077704 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus subtilis # 4 432 1 437 440 374 51.0 1e-103 MQTLEKVFHLQDAHTTVKRELIAALTTFVSLSYILFVNPNILHAAGIPKGAAFTVTALAT AVGCFLMGFIANYPIALAPTLGSGAFFAYNVCVGMHISWETALAAVLVASVLFILITVFK LRELVVNAIPQDMKYAISAGIGLFIAFIGLKNGQLIVNSDSTLVTLGKFSTPAVWITLFG LILTVVLMALNVPGSIFIGMIVTAIFGMIIGQIPLPHNIVSGAPSIAPTFGQAVFHIKDI NTAQLWMVVLTFLLVTFFDTAGTLIGMTEQAGMVDKDGKIPRIGRAFLADSTAMVEGAVF GTAPLGTSVESSAGIAMGGRTGLTAIFVGIFFIISMIFSPLLQVIPTTVTAPALIIVGVL MASNLKKIDWEKFEIAFPAFLTVVGMPLTYSISDGLALGLIAYPITMIASKRYKEVSPMM YILFVVFIIFFLVTNL >gi|256541393|gb|ACPV01000081.1| GENE 2 1570 - 2343 839 257 aa, chain + ## HITS:1 COG:BH2659 KEGG:ns NR:ns ## COG: BH2659 COG0561 # Protein_GI_number: 15615222 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Bacillus halodurans # 5 248 4 248 257 139 31.0 6e-33 MSKPKIIFFDIDGTLIEKKKSITPKMLETLHALQDNGIMICIASGRPPVQLPKLGVDFDA YLTFNGSYCYNDQDIVFDNPLRQGDVLHMIQNAQKINRPLAVATKTRIAANGVDEDLKEY FAIGGTDLRVAPDFDVVVDQDTVYQIMVGCREKDYDGLVANTQNAKVTAWWDRAADIIPA TGSKGVAIEKVLDYYQIPVSEAIAFGDGGNDIEMLKTVGHGVAMGNATDDVKEIADDICG SVQDDGIFTYCKKHNLI >gi|256541393|gb|ACPV01000081.1| GENE 3 2381 - 3634 1064 417 aa, chain - ## HITS:1 COG:lin0154 KEGG:ns NR:ns ## COG: lin0154 COG1373 # Protein_GI_number: 16799231 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Listeria innocua # 18 416 1 398 400 409 54.0 1e-114 MKIAKNLLYEGNNMQLNLINRPQYLNQLLQFQNTEFIKVLTGVRRSGKSYILMLYREYLL KHNINEHQIIYISFEDFDNIDLYEPKKLYSYLKERIISDQRMYILLDEIQYVSDWQKVVN SLRLNPLLDITITGSNSNLLSGELATLLSGRYVEIHVYPLSFKEMLDFKHISEPSERQID NLYDEYIKYGGFPAVVLAKEELKQTILSGIYNTIIVNDIGYKNGLREPELVALVAKYLAD SIGQLINPNKIVNTLKSANFDISYNAVQRYLKYFEEAYLFYKSSRYDIRGRKILSTQGKD YIVDTGLRTQALGERNNDRGSVLENIVYVELLRRGYTVQIGKLDNKEIDFIVFKVNDKQY IQVTYQLPENSTRETDNLLQIPNNYKKIVITGRYENEEMISGIPIINIKDWLLSSKN >gi|256541393|gb|ACPV01000081.1| GENE 4 3723 - 4100 271 125 aa, chain - ## HITS:1 COG:L143624 KEGG:ns NR:ns ## COG: L143624 COG2207 # Protein_GI_number: 15673292 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Lactococcus lactis # 1 123 201 323 324 98 39.0 3e-21 MWDYFKPELTKRLSELSVDDSTSARVRSILTELLPNGEFTIDDVAKKLGYSKQTLQRKLS SENTTFQKQLNSTREVLALNYLQNTDMTTSDIAYLLGYQEFNSFLRAFSIWKGISISEYR EKMNK >gi|256541393|gb|ACPV01000081.1| GENE 5 4104 - 4700 347 198 aa, chain - ## HITS:1 COG:L143624 KEGG:ns NR:ns ## COG: L143624 COG2207 # Protein_GI_number: 15673292 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Lactococcus lactis # 39 198 40 198 324 68 29.0 6e-12 MNHFILDGRYEDLLSFNVEEALKKANIPEDCFKKLHPSMSEQQYYNFMAAIGDQISDPFT PIEIATTNPIESFSPPIFAAYSSRNGDIFIKRLAKYKKLIGPLSFKIDEDSKQLSITLTP SNQQYSLPSFLVLSEFAFLVGLLRKTTKEAISPLKITMTSPVNDEQVINFFGCKIESGKR NTITFAKKDLQVNFISYN >gi|256541393|gb|ACPV01000081.1| GENE 6 4907 - 5101 182 64 aa, chain - ## HITS:1 COG:all3753 KEGG:ns NR:ns ## COG: all3753 COG0300 # Protein_GI_number: 17231245 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Nostoc sp. PCC 7120 # 2 57 149 204 263 65 53.0 3e-11 MPGPLQAVYYATKAYVTSWSNALWREVQGTGVTVSCLMPSAMQTGFISRGDLSSTQLFAH AVSP >gi|256541393|gb|ACPV01000081.1| GENE 7 5064 - 5507 537 147 aa, chain - ## HITS:1 COG:AGl1280 KEGG:ns NR:ns ## COG: AGl1280 COG0300 # Protein_GI_number: 15890762 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 6 134 36 164 291 90 35.0 6e-19 MTTQEGKTALITGSYGGLGTQFVNIHASHGGDLILVGRNAKKLADQQKEARRKYNVTAHI IDVDLSQPDAAQKIYDTCKKNGWTIDYLINNAGFGGQDEFIKRSMEQDMSMIAVNIETPT RLTKLFLPDFVKRGRYAWPTSSRLLRY >gi|256541393|gb|ACPV01000081.1| GENE 8 5690 - 6022 207 110 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01999 NR:ns ## KEGG: LCRIS_01999 # Name: not_defined # Def: cytosolic protein # Organism: L.crispatus # Pathway: not_defined # 1 110 1 110 110 188 98.0 6e-47 MRTNDIVDIYVAYIDKPGGKNRPVLIIKLLNSKAWLLKITSKYKEKSENIRKHYFPIFDW KKYNLDKPSYIDTKNYLIVTISDLNIEKYRGHFSIADLRKLKDFIDENPN >gi|256541393|gb|ACPV01000081.1| GENE 9 6012 - 6278 246 88 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01998 NR:ns ## KEGG: LCRIS_01998 # Name: not_defined # Def: DNA-damage-inducible protein J # Organism: L.crispatus # Pathway: not_defined # 1 88 1 88 88 147 100.0 1e-34 MKSYKKIQANVDSSLALQAEGIFQDIGLNTTTAINVFLKKVVATGGIPFELKETPEQKAS RELIQSISKIPHKEAKTKKEIEDWLDED >gi|256541393|gb|ACPV01000081.1| GENE 10 6447 - 7757 1488 436 aa, chain - ## HITS:1 COG:BS_yebB KEGG:ns NR:ns ## COG: BS_yebB COG2252 # Protein_GI_number: 16077704 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus subtilis # 4 433 1 439 440 390 52.0 1e-108 MNSISKFFHLKENNASFKTELLAGLTTFVSMSYILFVNPNVLGASGMDKGALFTVTALSA AFTCIVMGLIANYPIASAPTLGLNAFFTYTVCLGMKVKWQTALAAVFVASILFILLTVFK VREMIIDAIPADIKYAISAGIGLFIAFIGLQGGKLIQNSDSTLVTIGSLNNPTVWITIFG LIITIFLMIARVPGAIFIGMIAAAVFGIVTGQIPMPKGVISSVPSIAPTFGQAVFHIGDI NTVQMWIVVFTFLLVTFFDTTGTLIGLVQQAGLMKDNKMPRAGEALAADSSGMLVGSVLG TSPVGAFVESSAGIAVGGRTGLTAVWVGIFFLISTIFSPILSVFTTQVTAPALIIVGVLM AENLAHVHWTNLEIAIPCFLIALGMPLTYSISDGLGWGLIVYPVSMIAAKRFKEITPMMW ILFIVFVIYFVVLNVK >gi|256541393|gb|ACPV01000081.1| GENE 11 7941 - 8666 543 241 aa, chain + ## HITS:1 COG:SPy1863 KEGG:ns NR:ns ## COG: SPy1863 COG0789 # Protein_GI_number: 15675682 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 241 1 238 245 134 32.0 2e-31 MSERYGIGEVAKKLQVSTRTLRFYDQKGLLKPTKAENGYRFYNEDQVQQLQVIIYLKELG FSLAKIKTLLQADHAQESLALLVNAQLQSNNEEIEKFQTQQKQLYDLQKILTKQSNLELT DLTKMMTNETILKKFRRRMLVYGLLLDAVEIIGIILAFYFGKRGNDIGVIASVGIMLLVV VFGAFKLSLSYYKAVAYVCPHCGHTFVPSFRTFMFVAHTPKMRRLRCPNCHEKSYCLEVG R Prediction of potential genes in microbial genomes Time: Wed May 25 05:38:29 2011 Seq name: gi|256541392|gb|ACPV01000082.1| Lactobacillus crispatus 125-2-CHN cont1.82, whole genome shotgun sequence Length of sequence - 10297 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 9, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 837 262 ## LCRIS_01825 predicted metal-dependent membrane protease / abortive infection protein - Term 952 - 995 5.1 2 2 Tu 1 . - CDS 1170 - 1472 337 ## gi|256843870|ref|ZP_05549357.1| predicted protein - Prom 1496 - 1555 8.8 - Term 1711 - 1781 15.8 3 3 Tu 1 . - CDS 1957 - 3264 1406 ## COG2252 Permeases - Prom 3311 - 3370 6.1 + Prom 3268 - 3327 8.3 4 4 Tu 1 . + CDS 3493 - 4293 745 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 4295 - 4339 11.1 - Term 4279 - 4331 12.5 5 5 Tu 1 . - CDS 4344 - 4802 485 ## LCRIS_01992 putative protein without homology - Prom 4828 - 4887 6.8 - Term 4866 - 4909 0.2 6 6 Op 1 3/0.333 - CDS 4917 - 5603 955 ## COG1428 Deoxynucleoside kinases 7 6 Op 2 . - CDS 5621 - 6355 496 ## COG1428 Deoxynucleoside kinases - Prom 6453 - 6512 11.0 - Term 6490 - 6529 1.4 8 7 Tu 1 . - CDS 6563 - 7282 950 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase - Prom 7368 - 7427 7.7 + Prom 7329 - 7388 6.9 9 8 Tu 1 . + CDS 7409 - 8236 724 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Term 8300 - 8333 3.1 10 9 Op 1 26/0.000 - CDS 8342 - 9298 1090 ## COG1079 Uncharacterized ABC-type transport system, permease component 11 9 Op 2 . - CDS 9298 - 10296 1034 ## COG4603 ABC-type uncharacterized transport system, permease component Predicted protein(s) >gi|256541392|gb|ACPV01000082.1| GENE 1 3 - 837 262 278 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01825 NR:ns ## KEGG: LCRIS_01825 # Name: not_defined # Def: predicted metal-dependent membrane protease / abortive infection protein # Organism: L.crispatus # Pathway: not_defined # 9 270 126 387 403 110 33.0 7e-23 MVNYRKIDNWFLRLISVQALMISYELLAFPLIGNSIIDALLRYRIIDIISFFIIAILILK KWKINFRWNFTIVHMTITQALTVLLLLIFSIWLIGFNQFGNMGSNLSEAFFYWKDIIQSS LNINTTAFLKAITPSFMEEIERFFNISILLLATYKMKYKRWTATLGSAFIFSVGHWPNLL NHISLNDLSTQIITTFSMGCLFAVIYLCTGKLWLIIAIHFLNDLIGFSITSTSPYSLRLG ILTSYYNGMLTSVLIFVLPLLASVLILSFKETRQLINN >gi|256541392|gb|ACPV01000082.1| GENE 2 1170 - 1472 337 100 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843870|ref|ZP_05549357.1| ## NR: gi|256843870|ref|ZP_05549357.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 100 1 100 100 125 100.0 6e-28 MKHKKILGLAFVATLGLELLTTTSETALADNTSTNSHQFSGTQYRVMTAVPSELPTDPIV GAPGSPNQFDHFYSPGYISGGSPSHHSHHSKKKPRKGHKH >gi|256541392|gb|ACPV01000082.1| GENE 3 1957 - 3264 1406 435 aa, chain - ## HITS:1 COG:BH0608 KEGG:ns NR:ns ## COG: BH0608 COG2252 # Protein_GI_number: 15613171 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus halodurans # 7 430 4 429 434 394 56.0 1e-109 MNFIKSYFQLDKYKTNIRTEFIAGLTTFISMSYILFVNPSVLGASGMNTGAVFTATALAA ALGTAIMGIVANYPIGEAPALGINAFFAYTVCIGMHVSWETALASVFVASIIFILITLFK LREKIIDSIPADLKFAISSGIGLFIAFLGLQNGKLIVANKSTLVGLGSLHDPLVWITIFG LLVTVILMILNVPGAIFIGMVLAAIFGICTGQIALPHKVISTAPSLAPTFGQAIFHVKDI NSVQMWVVVLTFLLVTFFDTAGTLIGLAQQAGFMKNNKMPRVGKALAADSSAMAVGSILG TSPVGAFVESSAGIAVGGRTGLTAVFVAIFFLISMIFSPLLGVFTSQVTAPALIIVGVLM AQNTAHIHWNKLEIAVPAFLIILGMPLTYSISDGLSWGMITYPICMLAAKRGKEVTPMMW VLFVVFLIFLWVFIF >gi|256541392|gb|ACPV01000082.1| GENE 4 3493 - 4293 745 266 aa, chain + ## HITS:1 COG:HI0003 KEGG:ns NR:ns ## COG: HI0003 COG0561 # Protein_GI_number: 16271979 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Haemophilus influenzae # 1 264 1 258 262 121 32.0 2e-27 MSAQLIFSDLDGTLINDDLKVTAATRDAIRRQIINGNIFVPASARLPKGMMTVVNQILKV CPFIAYNGALALDETGKVLISRFFNAKEAAEICRYVDEQDNDAAWNIYSGYVWYCSEEKS PRVKNEERIVDVKATPTTINQLEKLQGVHKGLIMGDSADLDRMQEELTAKYPDLTFVRSS QTLLEIVLKGVSKASAVKIVAQEYGVDLQNCIAFGDNFNDEEMLKEVGHPFLMGNAPAEL KQRFSSEQITADNNHDGVAEALEKIK >gi|256541392|gb|ACPV01000082.1| GENE 5 4344 - 4802 485 152 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01992 NR:ns ## KEGG: LCRIS_01992 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 152 1 152 152 204 96.0 6e-52 MLSTVTGGQWFFPLIIVCLILGIVAIIAQKKKLTKLKRITDNFAYAILVILLIIEWILYF QKQFNFITPAIYTLVVIYLIGRQLLTRYRSSLLKKLGAKYKQLTIGLATIYIILVTLLLL IGSKFSTMGWIIAGLVIVAFGFVSYIFEKDKQ >gi|256541392|gb|ACPV01000082.1| GENE 6 4917 - 5603 955 228 aa, chain - ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 211 1 212 217 243 59.0 2e-64 MTVIVLSGPIGAGKSSLTGILSKYLGTKPFYESVDDNPVLPLFYADPKKYAFLLQVYFLN TRFHSIKDALTEDNNVLDRSIYEDALFFQMNADIGRATSEEVDTYYELLHNMMGELERMP KKNPDLLVHINVSYDTMIKRIQKRGRPYEQLSYDSTLEDYYKRLLRYYKPWYENYDYSPK MEIDGDKLDFMANPADKQIVLDQITDKLKEMGKLPADWEKPTDIQIEA >gi|256541392|gb|ACPV01000082.1| GENE 7 5621 - 6355 496 244 aa, chain - ## HITS:1 COG:SPy0121 KEGG:ns NR:ns ## COG: SPy0121 COG1428 # Protein_GI_number: 15674338 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Streptococcus pyogenes M1 GAS # 33 241 2 210 213 221 55.0 8e-58 MKHNQKITCVPQHLVLNLIIVYIWYLRKNVIQVIVLSGPIGAGKSSLTSILAEHLGTQAF YEGVDNNPVLPLYYKDMKRYTFLLNTYLLNHRLAQINQAIQEKNSVSDRSIYEDALFFKM NADSKVADPTEFKIYDDLLDNMMEDTPGNPSKKPDLLIYIHVSLDTMLNRIKKRGRSFEQ ISTDPGLKDYYARLLKYYEPWYENYHASPKIEINGDKLDFVTNMDAQKEVLKEIDEKLHE IGNL >gi|256541392|gb|ACPV01000082.1| GENE 8 6563 - 7282 950 239 aa, chain - ## HITS:1 COG:SPy1399 KEGG:ns NR:ns ## COG: SPy1399 COG0363 # Protein_GI_number: 15675320 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Streptococcus pyogenes M1 GAS # 1 234 1 234 234 278 59.0 6e-75 MKVIVTENKIQGGAKAFEIFEKGIKNGAKVLGLATGSTPETLYQNWVKSDLNCENLTSIN LDEYVGLTPDNPQSYHYFMQKHLFDKKPFKKTYVPDGMAKDVDAFCKEYDQIIKDNPIDI QLLGIGRNGHIAFNEPGTPFNIGTHEVKLTENTIKANARFFDSIDEVPKSAICMGTANIM QSKKIVLMAFGEKKAHAIKKMIEGKVTEEVSASILQKHPDVTVIVDEAAAQELDDKYKN >gi|256541392|gb|ACPV01000082.1| GENE 9 7409 - 8236 724 275 aa, chain + ## HITS:1 COG:AGc3682 KEGG:ns NR:ns ## COG: AGc3682 COG0656 # Protein_GI_number: 15889320 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 5 275 15 281 281 257 45.0 2e-68 MNFEKLTGLGIGSWGLGEDPKKKKDEIAAIRYGLDHGLSVIDTAEMYGDGQSEELIGEAI KGYDREKLFLISKFYPYHATPKLERQSLEASLKRLGTDHLDLYLLHWRGSHRLSDTIHGL QALQKDGLIRYWGVSNFDTADMQELFTVPGGEECFANEDLYNISERGTEFDLQAWQEEHG VNFIGYSPFNSGKGNTIRITRNLKIVARDHGVTPHQIMLAWTMRNGNVLTIPKASSVEHM KENIATQKIKLTDDELRLLNSDFPMPTEKTPIAVI >gi|256541392|gb|ACPV01000082.1| GENE 10 8342 - 9298 1090 318 aa, chain - ## HITS:1 COG:SPy1225 KEGG:ns NR:ns ## COG: SPy1225 COG1079 # Protein_GI_number: 15675189 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 318 1 318 318 395 67.0 1e-110 MNFVTMMALIVSSTLVYSAPLILASLGGVYSENSGIVNIGLEGIMTMGAFAAIVFNLTFA STFGAATPWLGTLVGGIVGLIFSLLHAVATINFHADHVISGTVLNIMAPPLGVFLIKAIY DKGQTENITANFGYFSFPGLSSIPIVGPIFFKNTSAPAWIAIILAILMWWILYKTRFGLR LRSCGENPQAADTMGINVYGMRYAGVLISGFMAGLGGAVFAQAISGNFSVSTIVGQGFMA LAAVIFGKWNPIGAMLSSLFFGFAQSLSIIGHQLPGIDQIPSVYMQIAPYVITIIVLVLF LGKSVAPAADGVNYIKSK >gi|256541392|gb|ACPV01000082.1| GENE 11 9298 - 10296 1034 332 aa, chain - ## HITS:1 COG:SP0847 KEGG:ns NR:ns ## COG: SP0847 COG4603 # Protein_GI_number: 15900734 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 301 48 346 352 279 50.0 5e-75 MNGIGETIREATPLIFIAIGFAIASKAGFFNIGLPGQAQAGWLTSIWIVLANPQLPKPVL LPLAIIAGAIAGAIVAGIAGYLRAQFGTNEVITTIMLNYIVLYTCQYLMQQVMSSKLRID TDTTKTIPANGSLKLNWLTSMFGDSRINAGIFLAIIGLIFYWYLMKKTTVGFEIKAVGLN PFASRYAGMSSKKNIIISMLLSGAFSGLGGVVQGLGTYQNYFTQTTSLDIGWDGLSVALL GGGTAIGILLASLLFSILKIGGLGMQTIAGIPYEIVSIVIAAIIFFIAINYVIGLLFKTK KNRSDYYIPTRKEKGPNNGVDGPGRKVIEGEK Prediction of potential genes in microbial genomes Time: Wed May 25 05:38:55 2011 Seq name: gi|256541391|gb|ACPV01000083.1| Lactobacillus crispatus 125-2-CHN cont1.83, whole genome shotgun sequence Length of sequence - 46583 bp Number of predicted genes - 39, with homology - 39 Number of transcription units - 26, operones - 10 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 9 - 68 4.0 1 1 Tu 1 . + CDS 92 - 697 648 ## LCRIS_01982 membrane protein 2 2 Tu 1 . - CDS 789 - 3527 2550 ## COG2352 Phosphoenolpyruvate carboxylase - Prom 3573 - 3632 4.8 3 3 Op 1 . - CDS 3634 - 5973 2232 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 4 3 Op 2 . - CDS 5988 - 7091 945 ## COG1434 Uncharacterized conserved protein - Prom 7123 - 7182 6.3 + Prom 7066 - 7125 3.7 5 4 Tu 1 . + CDS 7183 - 7836 573 ## COG1266 Predicted metal-dependent membrane protease + Term 7849 - 7885 6.6 6 5 Tu 1 . - CDS 7865 - 8734 875 ## lhv_1911 hypothetical protein - Prom 8786 - 8845 6.6 + Prom 8748 - 8807 7.3 7 6 Tu 1 . + CDS 8840 - 10108 263 ## PROTEIN SUPPORTED gi|148990506|ref|ZP_01821647.1| ribosomal protein L11 methyltransferase + Term 10113 - 10156 6.1 + Prom 10134 - 10193 5.0 8 7 Tu 1 . + CDS 10335 - 10691 621 ## LCRIS_01977 hypothetical protein + Term 10734 - 10783 11.3 - Term 10729 - 10765 2.1 9 8 Tu 1 . - CDS 10769 - 11629 581 ## LCRIS_01976 transcriptional regulator - Prom 11763 - 11822 5.4 10 9 Tu 1 . + CDS 11725 - 13293 1255 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 11 10 Op 1 . - CDS 13318 - 13587 95 ## COG4115 Uncharacterized protein conserved in bacteria 12 10 Op 2 . - CDS 13574 - 13882 471 ## gi|227878434|ref|ZP_03996374.1| hypothetical protein HMPREF0506_1375 - Prom 13925 - 13984 3.2 - Term 13955 - 13984 -0.2 13 11 Tu 1 . - CDS 13990 - 15159 1305 ## COG0475 Kef-type K+ transport systems, membrane components - Prom 15273 - 15332 6.5 - Term 15336 - 15381 9.2 14 12 Op 1 1/0.000 - CDS 15394 - 17256 2150 ## COG2217 Cation transport ATPase - Prom 17321 - 17380 3.1 - Term 17349 - 17377 2.3 15 12 Op 2 . - CDS 17385 - 17855 504 ## COG0517 FOG: CBS domain - Prom 17983 - 18042 8.2 + Prom 18344 - 18403 4.9 16 13 Op 1 . + CDS 18443 - 19579 851 ## LCRIS_01970 hypothetical protein 17 13 Op 2 . + CDS 19598 - 19894 224 ## LCRIS_01969 putative protein without homology + Term 20066 - 20117 4.9 + Prom 19909 - 19968 6.6 18 14 Op 1 6/0.000 + CDS 20211 - 21725 2082 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 19 14 Op 2 7/0.000 + CDS 21785 - 22963 1001 ## COG1696 Predicted membrane protein involved in D-alanine export 20 14 Op 3 6/0.000 + CDS 23000 - 23239 439 ## COG0236 Acyl carrier protein 21 14 Op 4 . + CDS 23232 - 24518 1309 ## COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) 22 15 Tu 1 . + CDS 24650 - 25459 633 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 25460 - 25516 7.2 + Prom 25520 - 25579 5.5 23 16 Tu 1 . + CDS 25775 - 26491 854 ## COG5523 Predicted integral membrane protein + Term 26511 - 26549 6.2 - Term 26499 - 26537 3.2 24 17 Tu 1 . - CDS 26563 - 27513 1289 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) - Prom 27553 - 27612 8.2 + Prom 27695 - 27754 7.8 25 18 Tu 1 . + CDS 27899 - 29419 1317 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - Term 29463 - 29499 4.0 26 19 Op 1 . - CDS 29522 - 29758 388 ## LCRIS_01959 hypothetical protein 27 19 Op 2 36/0.000 - CDS 29805 - 32345 2498 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 28 19 Op 3 . - CDS 32355 - 33059 266 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 33080 - 33139 6.4 + Prom 33071 - 33130 9.9 29 20 Op 1 . + CDS 33151 - 34455 893 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 30 20 Op 2 . + CDS 34448 - 35326 710 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold + Term 35457 - 35510 12.5 + Prom 35496 - 35555 10.0 31 21 Tu 1 . + CDS 35657 - 37783 1351 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 37788 - 37857 9.8 + Prom 37817 - 37876 6.0 32 22 Tu 1 . + CDS 37897 - 38529 643 ## COG0681 Signal peptidase I + Term 38534 - 38571 5.0 + Prom 38552 - 38611 7.8 33 23 Op 1 3/0.000 + CDS 38693 - 40042 1224 ## COG1113 Gamma-aminobutyrate permease and related permeases 34 23 Op 2 . + CDS 40115 - 41488 1258 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 41493 - 41531 2.8 35 24 Tu 1 . + CDS 41550 - 42650 546 ## LCRIS_01950 hypothetical protein + Prom 42794 - 42853 7.7 36 25 Op 1 . + CDS 42881 - 43786 704 ## LCRIS_01948 hypothetical protein 37 25 Op 2 . + CDS 43788 - 44267 182 ## LCRIS_01947 YobM related protein + Term 44269 - 44328 5.2 + Prom 44338 - 44397 4.3 38 26 Op 1 1/0.000 + CDS 44427 - 45155 936 ## COG2071 Predicted glutamine amidotransferases 39 26 Op 2 . + CDS 45168 - 46559 1775 ## COG0531 Amino acid transporters Predicted protein(s) >gi|256541391|gb|ACPV01000083.1| GENE 1 92 - 697 648 201 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01982 NR:ns ## KEGG: LCRIS_01982 # Name: not_defined # Def: membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 201 1 201 201 313 99.0 2e-84 MRREETKRLAITAVFAALLIVQTFVPNVGYVRIIPALPAVTTIPMTIAVYGTLMGQKAGL GFGLFWGITRLIVAYTQPGDMVSLMLFQNPVISLVPSILAGYFPGIIAKGMSKTKYAKLG YIISGAVTSLTNTVMVILLTSIFFMHDPASLTHYLGNYSSGTPLILILIMALGMNGLVEA IFTAIVVPVIVTPLNLVMKKA >gi|256541391|gb|ACPV01000083.1| GENE 2 789 - 3527 2550 912 aa, chain - ## HITS:1 COG:SPy0608 KEGG:ns NR:ns ## COG: SPy0608 COG2352 # Protein_GI_number: 15674689 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxylase # Organism: Streptococcus pyogenes M1 GAS # 1 912 1 920 920 1056 59.0 0 MTVKKLENNSDVNVVAEESKVLTDLLNESTKQVIGQAAFDKIQNLIKISAAKDYQELEKQ IASLNNREMIVVARYFATLPLLINISEDVELASKVNVLNNTHQDYLGKLSDTIDIVAQKK NAEEILEHVNVVPVLTAHPTQVQRKTILELTDQIHQLLRNYRDVKNGTIDRDEWTEQMRA CIEILMQTDIIRGHKLKVANEITNVLAYYPKALIPAITKFTSRYKELAKKHGLNASHATP ITMGMWIGGDRDGNPYVTADTLELSATLQSQVIFEYYIKQINKLYRAISMSTSYMEPSDD VMHLSELSNDDSPFRTNEPYRRAFYYIQSRLVHTEQKLLNITNKNTFLKKRDLQNLDKIP CYQNAQEFKADLEIIKNSLEEDHDHAVVDSYFTQILEAINIFGFHLATIDMRQDSSVNEA CVAELLKSAGICDNYSDLSEDKKIKLLLNELNNDPRNLHANNKPKSELLQKELKIYKTAR QLKDRLGEDVIKQHIISHTESVSDMLEQAIMLKEYDLLDNQKARIQVVPLFETVEDLNNA REIIKEFLSFDIVKKWLVSQNNYQEVMLGYSDSNKDGGYLASCWNLYKAQKDLTKIGEEM GIKITFMHGRGGTVGRGGSPSYEAITAQPFKSINDRMRMTEQGEIIQNKYGNKDTAYYNL EMLASATIDRMASKQIVSEDHVADFRSSMDQIVAKSNEVYRKLVFENPNFLKYFFQATPI KEISGLNVGSRPASRKKLTDFSGLRAIPWVFSWSQSRVMFPGWYGVGSGFKSFIDADPAN LKELQNMYQGWPFFHSLLSNVDMVLSKSNMRIAKQYADLCEDEQVKSVFDIINQEWELTK KVILQIEGHDELIEDAPTLKKSLEYRMPYFNILNYIQLEMIKRDREDVIQGVYQSIIPIT INGVASGLRNSG >gi|256541391|gb|ACPV01000083.1| GENE 3 3634 - 5973 2232 779 aa, chain - ## HITS:1 COG:L119891_1 KEGG:ns NR:ns ## COG: L119891_1 COG1136 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Lactococcus lactis # 1 287 3 289 290 233 40.0 1e-60 MLQLKHIFKSYKVGDNITHALDDVTISFRDQEFVAILGPSGSGKTTMLNVIGGLDRYDQG DLIINGKSTKNFKETDWDAYRNNTVGFVFQNYNLIPHLSIIANVELGMNLSGVPKKQRHE KAIAALTEVGLKDHLNKRPNQLSGGQMQRVAIARAIANDPDILLCDEPTGALDTETSVQI MKLIKKLSKDRLVIMVTHNPELAKEYATRIVNFQDGKIRHDSDPFSPNKEEDKFNLKRTK MSYWNAIKLSFTNIMTKKGRTLLTAFASSIGIISIAVVLAISNGFQKQINTTMSKALAKY PISISQTATDITSANARKESDKNVKNRGYVTAEQDQSEQAQHVNKISTKYVNYIKKINPN YANNVSYQRGVSLNLLAKNKGKIERVQFSNTDPDQTNSVLAARSQAMSSMGLGSSVFPTT LNKEKDSFLKQNYQLLSGTWPTKATDLVLVTDNKNTVNINALKNLGFDLKNKEHVKFGQL VNKQFRVVANNDYYQQLPTGMFIPKKVNNAMYNGAQTKLKIAGVIRPKNEDSMALLSTGI AYSDQLSQRVINENKNSAIVKAQKKSNHSVLTNQKLNANEKKATMQTLGGTSIPTGIMIY PNNFDDKDKVLDYLDKWNKGKKKSDKILYTDMSNAVTTMTGGLLSGITTILVAFAGISLI TSMIMIGILTYTSVLERTKEIGVLKALGARKKDITRVFDAETFILGVFSGVLGILIAYLL TFPINSIIYKITDLANVAQLDPTAAIVLIIISTILTLLGGHIPARMAAKKDAAIALRSE >gi|256541391|gb|ACPV01000083.1| GENE 4 5988 - 7091 945 367 aa, chain - ## HITS:1 COG:lin1003 KEGG:ns NR:ns ## COG: lin1003 COG1434 # Protein_GI_number: 16800072 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 95 359 80 342 344 177 42.0 4e-44 MLNQIIAFLGRRGEFFYISVFMLLIFFAFLISWLIEPRRLINGVLFTIFIVSMLSWITVM VHKSTSHGLQRAYDLLVLAALFGIVLLLIFAWIFLFWNAYFVWKYESHTLPNLLTLITGF LALIISIIVLLGPGKYLPRWLSLALASIPAIAIYLGLVLYNFLVNLLLYQIYPRTYHQDY LIVLGSGLINGDQVSKLLAARINRAIQYSNRQYQKGRKRPILIMSGGQGADEKISEALAM SRFAQRRGVSVDRILLEDQSKNTYENMLFSKRIATKDFGNSHFRARFFSNNYHIFRAALL AKEVGLKANGVGAYTRFYYLPNAIIREFAGVFVMHKRRHFVIMGLIVLFFILQAILVMTG LERFTVI >gi|256541391|gb|ACPV01000083.1| GENE 5 7183 - 7836 573 217 aa, chain + ## HITS:1 COG:SP0288 KEGG:ns NR:ns ## COG: SP0288 COG1266 # Protein_GI_number: 15900222 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Streptococcus pneumoniae TIGR4 # 36 216 39 213 230 59 28.0 5e-09 MKRFGHYLGNIAGAVLALVIYSELEVLYFRPQRFDLAQYRVFVTALATVIVLFAISYIYR RQLKEENDWGFDETPHWDWRRIGIAMIGFVLIVVGSIVMLNLVGGGVSKNQESLNKIAEY NAGLFRILVVFIAPFCEEHIFRGMFFNIFFTKKNTRNKWLGIVASGFLFGYMHDPALSKY ILVYWVLGMVLAWVYMSTKDLRYSILVHMCYNALGFI >gi|256541391|gb|ACPV01000083.1| GENE 6 7865 - 8734 875 289 aa, chain - ## HITS:1 COG:no KEGG:lhv_1911 NR:ns ## KEGG: lhv_1911 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 284 8 286 289 181 38.0 2e-44 MTIGELLKEKRLAENKTQKAWVGHIISTSYYAKVEKNIHRITAEDLLAILKHNDLSITDF FEELADKKDELKAQVNSLNKTVIDAVYHSDVSKVNEVIQIIKKMDLPTKQKQELILINKG FIETIKNDLSDNYQPDKNIVQQLKDKIFSIPNFNRFKLELYTNFMQFYDYTTNIMITKQV IHKIDQFKSDKELLAIAGILFNLLSQLVEEHHYQETAPFIAASEHLPFLPDLYFPQTGIS LLKYLISYHFNKKTADLAKAEMIAQTYQITGLEDFGKGAQEIINEVKED >gi|256541391|gb|ACPV01000083.1| GENE 7 8840 - 10108 263 422 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148990506|ref|ZP_01821647.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae SP6-BS73] # 1 379 1 385 415 105 25 4e-22 MNVFLKNADFRRFSVASFLSGAGDILFYLAFMTYASKLQNYSLALSLIAISESVPKLFEI FGGYLADKTKKKFRNIFLAAFVRFILYGLVGLLFITKMSQWNLVLIIVVVNFLSDTIGSY SGGLVAPLIVDIVGKKEYGNAVGFNGGVNQIISMGAQFIGSALLLVMSYSTLAFVNAGTF LLAGLLFASVGLKHQKDQKPLEKKEVNDQNFFQTMKTSLTQVKKQSGLLTVVLVIALLNG ALDTITPLTTIVLAAHRSTMLIGTYSFTIALFGVVIGAGFALGSMFGPQLFKKLTVFSLV IISASLSIVTTTSIFLGNTYVIMITMFFLAAIAGVASVKMEQWLVTSVDHKILASTVGLL NTILMAVAPIMTTVLTTISGSFNVTVALVTLLVIQVITLIVAIFVSLKTRKVTQNSNEVA AA >gi|256541391|gb|ACPV01000083.1| GENE 8 10335 - 10691 621 118 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01977 NR:ns ## KEGG: LCRIS_01977 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 118 1 118 118 160 96.0 9e-39 MLVSKNLVKVVSIAVASMSLMGVGASVSQAASFTAPKLGVAETMPTDPAIKKGDKIFVAV KDTKNQKVNVLDAQGHKTSQKVSMGSTYTAKDVKKAAGKKIVKINKSQWLNTKDVVKD >gi|256541391|gb|ACPV01000083.1| GENE 9 10769 - 11629 581 286 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01976 NR:ns ## KEGG: LCRIS_01976 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 286 1 286 286 533 97.0 1e-150 MFKYGSIYKQLRKDQEITQTEACKGICSISKLSRWENNQVEVEFSTAIALLRRINITLDE FTHYAAMKTEFTLPDDIITAIKDNDTKVLEKFVQEQLNHYHANKNILELKNIILVCNQLF LMTGKNYLTPADINRIGSYLLHNTVWSKYNILLFANSPFLLNSKIGYQIALRIIHNFHPT ESLNENTTIFMGGLSDTVIALVFKKKLDYAQKILNELKKIGLPFYLMFFSSTLTLLQKII DYCHTLNAQPVLAMIDAIVQLNCMEVAKKWLEIFKDVQQIWPEKEN >gi|256541391|gb|ACPV01000083.1| GENE 10 11725 - 13293 1255 522 aa, chain + ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 4 518 5 526 535 177 26.0 4e-44 MIYKYSSHAKFIMLTILGLIASTQQIIFAYMVQTLTNVGTQRRFGDLAQFLVIVIGAFIA TFIASLIFNRLKTSAIQETNTTLRAGILKGMLGQTSEENTASLGFLTTDFKLLETNRFDA EIEIMMQAYMIVFALGYALCVNWLVTLLFLIGSCLPMLVSNLFQKKIQTAAENWTTANDK YVSHIKNFLAGSTTLNLYNKRDNAVKKNQVLINQLEDALRKMNLLNLDTNSWINLIASLF TFLTPFLVGIYMVVKGQTTLGALFAIVQLSNSFLNPILTILEDRNKLSTTKKIVAKAEKY IAKGKVEKKETNYNFANLQIEDLDLTRKGKELANQINFAVVKGQKVAVIGPSGVGKSTLL QFLLTGKHGHAKEILLNDKKQKPGSFTDLFAYASQSPVIFADTLWFNLTLGANISREKVS EVCQKLGLDQIIAEKGWDYSLGDNADQLSGGQLARIELARAILADRSILLLDEINASLDK KTSDQIHNYLLNSNLTFIEVIHHYESNELQKYDQVIDLGKLG >gi|256541391|gb|ACPV01000083.1| GENE 11 13318 - 13587 95 89 aa, chain - ## HITS:1 COG:MT3466 KEGG:ns NR:ns ## COG: MT3466 COG4115 # Protein_GI_number: 15842954 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 5 87 3 85 85 83 43.0 9e-17 MTKLNLNFNYNAWNEYLEWKKEDKKTSQKIDNFIKECQRHPFTGKGKPEPLKANLSGAWS RQSNHKDRMVYSVTTTELQIWQLKYHYSK >gi|256541391|gb|ACPV01000083.1| GENE 12 13574 - 13882 471 102 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878434|ref|ZP_03996374.1| ## NR: gi|227878434|ref|ZP_03996374.1| hypothetical protein HMPREF0506_1375 [Lactobacillus crispatus JV-V01] # 1 102 1 102 102 159 100.0 4e-38 MLQTPNNIRAVTARDLRNNFKKIADDINDYDTTVIVARPKDKNVVIISQKEYDSWQETSY LLGTKANRDALAEAKQSFENQDQRNKVLTPEEFEALTKDDEA >gi|256541391|gb|ACPV01000083.1| GENE 13 13990 - 15159 1305 389 aa, chain - ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 1 384 1 379 379 254 45.0 1e-67 MHFLGQLILILLTTVLLGQLFARFNMPAVIGQLLSGILLGPAILNWVKPNDIISLFSEFG VILLMFLAGLESDLDLLKKYFKLSFTVATVGVILPVVFMGLASYFFGMRPLEALFIGIVF AATSVSISVVVLQEAHQLHTRAGTAILGAAVVDDILAVVVLSLFTTFSHEGGKSGLTNNF LLNILIEVVYFVVVWLIFKFVAPYFMKASEKIDVDYSVVIGSLVLALTMAWAADFVGLSA VVGAFFGGLAIRQTPQYKEVHSSVSAIGYSVFIPVFFADIGLSMTFASFFKDIWFIIVMT VLAILSKFWAGKYSSEIFGFNKNEGNIVGAGMVSRGEVALIVAQIGINHHLFPEDIYSSL ILVIIVTTVISPFILNYFIKKSQNSTEFM >gi|256541391|gb|ACPV01000083.1| GENE 14 15394 - 17256 2150 620 aa, chain - ## HITS:1 COG:L96595 KEGG:ns NR:ns ## COG: L96595 COG2217 # Protein_GI_number: 15672077 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 606 1 590 593 450 41.0 1e-126 MKNLKRQWKFIVVLIAGAVGLISQFALHSKSLFSIGNLQFPVHAIIIDIIGILMAISLLL EIFHDWKTGRYGVDILAVIAVVSTILIGDVWAEWMILVMMTGGETLEDYATGQANKELRA LLDKTPRIANKLVDGKITEVKVDDLQVGDTVLIKPGQQVPVDGQIVKGTSSFDQSSLTGE SVPVTKNPGDELMSGSVNGDVAVEMKVTKAAKDSEYQSIVALVMSSQAQPAKFVKMADRY AIPFTVISLIIGGVAWAVSGDATRFAEVMVVASPCPLLIAAPVALVSGMSSMSAHHIIVK SGPTLEKLARAKTFAFDKTGTLTENQLIVDQVVTDDKSFDQKELQSLAASVEQQSSHVIA SSLVKATDKDLIHPVTNLKETTAQGVEGDVDGKHVKVGKLSFVAPGHEKLNVTSTAVYVS VDGKFAGYITLKDKMRPESPKTIERLRRQGAEDIMMLTGDHKQVAEKVAKEAGITDVRSE LLPSQKIQAIKDVPKHLRPVVMTGDGVNDAPSLTAADVGIAMGAKGATAASESADAVIMV NDISKVNDAVAISKHTMKVANIDVLTAIGVVIIIELIAFTGVIPAFWGAILQEVVDMITI SLGLLAKTKPSDKQFGLEEK >gi|256541391|gb|ACPV01000083.1| GENE 15 17385 - 17855 504 156 aa, chain - ## HITS:1 COG:lin1008 KEGG:ns NR:ns ## COG: lin1008 COG0517 # Protein_GI_number: 16800077 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 144 1 143 150 95 41.0 3e-20 MFSPSIKHLIEEKSGSFLIPASRIAFVQADNPLYHAFLILTKVKYSKIPVLDKEKRVVGL LSLEMITDKMLTTDEISTAPLDKLKVEDVMQTKFDKINFVETTLETQLHLLINNAFLPVV DDRGVFQGLLTRREWIKAFNYVVHTYDKHYETKRIK >gi|256541391|gb|ACPV01000083.1| GENE 16 18443 - 19579 851 378 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01970 NR:ns ## KEGG: LCRIS_01970 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 378 1 378 378 691 94.0 0 MKKIGKRILRFLLVLLLLAGIGAGGYFGYQWWQKQEMIRQRPKEKIAKDGTSTSPAWHNF ANYQKALREKYPFINKVANYVPPRTWDGKDFVLPGLVATKSYDFKTKKVNTATAMTPQGI TVAGKYILLTAYDGEHEHASVVYVLDKKTGKYLKTIQIPGRPHLGGIAYDPVAKNIWITG SMGKSSALAAFSMAELRAYKEGSQIPIKYKYQIAIPAVEKASTVTYYDGQLFVGFFNMYG RGKVAAYTIARSGKNRGSITNNEVKSVTGTLQWSDPTGETSMDKQIQGIAIYQNKIFLSQ SYGSGDSKLYVFPTSALNALDEKNAELVITMPPYLEQITAYKGQLLCVFESGSKIYARPE IVVMDRILSVNINALFGS >gi|256541391|gb|ACPV01000083.1| GENE 17 19598 - 19894 224 98 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01969 NR:ns ## KEGG: LCRIS_01969 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 98 1 98 98 149 88.0 2e-35 MKVDYRKKEIFLLRFSGWFCLFPATTYLYLWQNTHLIFCLVEVIVIALFAAFLLATAKSK MWTKPQNVWRLMIFALIFVAIVIFIPLFFAYRDCKRQQ >gi|256541391|gb|ACPV01000083.1| GENE 18 20211 - 21725 2082 504 aa, chain + ## HITS:1 COG:SP2176 KEGG:ns NR:ns ## COG: SP2176 COG1020 # Protein_GI_number: 15901986 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 2 504 6 515 516 478 48.0 1e-134 MIQDVIKKIDEIAANEPDRVVYDYLGETNTYGDLKKRSNAWAHKIASLDIPEHAPIMIWG GQTFEMIASFLGCVKSGHAYIPIASYSNAERLTMIQDVSKSPLVLEIDPLPEVDLTDVKV LKASEVEDDNFEVDEKNFVEGDENYYIIFTSGTTGKPKGVQISHDNLLSFVNWELSDFNL PEHPSFLAQAPYSFDLSVMSLYPALVSAGKLVVLPHDVTQNFGKLFQTLPKMQFNVWVST PSFAQMCFLDKTFDAEHHPDLSHFLFCGEELPHSEAEMLKKKFPDSHIFNTYGPTETTVA VTQVEITDEVLKKYDRLPIGKVKEDTKITIDTSKGDKPGEGEIIISGPSVSKGYMNNPEK TEAAFFHEDGAEYRSYRSGDAGFFDGDMLFYRGRIDFQIKFNGYRIELEEINFYLTKNKL VRYGVAAPKYNKDHTVKQIVAEIELKEGVRRQYSEAALTKMIREDLAKNIMPYMIPQRYI YQDALPISQNGKVDIKAVIKEVNK >gi|256541391|gb|ACPV01000083.1| GENE 19 21785 - 22963 1001 392 aa, chain + ## HITS:1 COG:SPy1311 KEGG:ns NR:ns ## COG: SPy1311 COG1696 # Protein_GI_number: 15675260 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Streptococcus pyogenes M1 GAS # 1 389 24 413 418 323 47.0 3e-88 MIALIPIIIGLYYGHRLKTYEAIFSIVFLFLIFDGDHWEQGVNLLIWLVYEFALTFAYQY YRHHGKNKTWIFSLAVILAIIPLAAVKYLTAFPDNSIGFVIGFLGISYVTFKTVQVIMEM RDGAIKKVDPVTYARFLLFFPTISSGPIDRYRRFKKDYDKVPTRDAYITDMQYAVRYLFQ GFLYKFVIGWFFGTYLLPKISAAALAVGNANGGLKLSWWLVAYMYCYSMYLFFDFAGYSL FAVSISYFMGIHTPMNFNKPFISKNIKDFWNRWHITLSFWFRDYIYMRFTFFAMKKKMFK NRIRLSQVSYFLLFLIMGFWHGLTWYYIVYGIFHASAICINDMWLRFKRKHKKQIPSNKF TKWFAIFLTFNVVCFSFLIFSGFLSQLWFGWK >gi|256541391|gb|ACPV01000083.1| GENE 20 23000 - 23239 439 79 aa, chain + ## HITS:1 COG:SP2174 KEGG:ns NR:ns ## COG: SP2174 COG0236 # Protein_GI_number: 15901984 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Streptococcus pneumoniae TIGR4 # 1 78 1 78 79 70 47.0 9e-13 MDTKQGVLDILNDLTGEDLSDQMDENIFDNGLMDSMASVQMLLNLQEKFDIDVPVSEFNR EEWDTPNKIVAKVESLENE >gi|256541391|gb|ACPV01000083.1| GENE 21 23232 - 24518 1309 428 aa, chain + ## HITS:1 COG:SPy1309 KEGG:ns NR:ns ## COG: SPy1309 COG3966 # Protein_GI_number: 15675258 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Streptococcus pyogenes M1 GAS # 5 415 3 416 416 325 42.0 1e-88 MSNKRRLWQIFGPVLCAFILLLVVFLIPWERTFSKQTIYEAAASQNTTVFKGSTMKQEAF EDGYVPFYGSSELSRFDPLHPSVIAEKYHRNYRPFLLGGPGSQSLAQFLGMQGTAKQLRN KKAVVIISPQWFTKRGQDPNAFALYYSPLQACNFLLSAKNNKTDRYAAKRLLEMPNVKGE IKNSLKQIAQGKKLTSFQKFYLQNRRRMLRNEDNFFSSFQLRDRVNKIQKRAKVLPNKYS VAALNKVAAEQAAIHTNSNNLGIDNTFFRTRLPKKVLKRLKGSQRDFDYVHSVEYGDFQL MLEQFAKQHTNVLFIIPPINGKWMKYTGLSSKMYQESVAKMEHQLTSQGFENIADLSRRG NEKYFMQDTIHLGWKGWVAVDQAVRPFMKEPNKRYDYDMSNYFYSKKWQNKDNVKRVDLS NKDRLKAE >gi|256541391|gb|ACPV01000083.1| GENE 22 24650 - 25459 633 269 aa, chain + ## HITS:1 COG:BS_pbpX KEGG:ns NR:ns ## COG: BS_pbpX COG1680 # Protein_GI_number: 16078758 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Bacillus subtilis # 1 259 139 384 391 84 25.0 3e-16 MTAAMVMHEVEKGKLKLSDKLSKFYPNVDGASSVKISNLIDMTSGLDLKAGQQLGTPEFI SDEANIKHDAQYTVFDASKLGKWHYTSVNYIFLCGILSKLEKKSYEQLFHDTYIKPLKLT HSEFLWSDKAKLLASHWVPGYEMREGEYVKVNHAKAVKDAHNELGAGSIVMSNADLAKTM QYILAGKILTNKSRKVLFKGQAPSYYNGGLYNLKHYKAANGAGEGYYTFMRATKDGQNMI ILQDNHTASGEFKKIKKKINRAMTMMLEF >gi|256541391|gb|ACPV01000083.1| GENE 23 25775 - 26491 854 238 aa, chain + ## HITS:1 COG:lin0656 KEGG:ns NR:ns ## COG: lin0656 COG5523 # Protein_GI_number: 16799731 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 4 204 2 164 345 89 32.0 5e-18 MATTRKELKEQARDQLRGNWGWAVLLSFVGWLIVYILTDIENFFEKGEDIVYGIVRRFGN NAELMYLDKVRVNPFAWLITLVVSVAIGLITWGVIYTILHFRDSGTKENVLSGIFSPFTR NFKSNFLTYILYEIFLILWTWLLIIPGLIKAYSYAVTPYILRDMLDSGHEPTATEAISAS RKLMDGHKMDLFIFDLSFIGWWLLGIISCGIGLLWVNPYYRQAKANFYRNLAGEQFAK >gi|256541391|gb|ACPV01000083.1| GENE 24 26563 - 27513 1289 316 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 48 249 157 348 444 107 35.0 4e-23 MSFKKKIITKLAYVAMLSTTGVAAAAIVQPQAHVQASTTSVAARSLGIDVASYQSADLSA HAKSGAKFAVVKVSEGTSYRNPKASAQIASARAKNMMPMGYHFATFSANSAAAKNEANYA IASAKAVGLGAGSYLACDYESGDGNNIYGGKNPTANAINAFMSKVKAAGYKPLLYASSSV LRNNINTNSVVNKFPNSLWVAAYAVSGRVDNPNFDYFPSMKGVSIWQFTDNWRGLNVDGN INVLPLTSSGSAVSQAPKKARVLKKKAHVYNKAGHRTGKTIKKGTSITTHGKKKTINGKK YYKIAKNQYIRSANLY >gi|256541391|gb|ACPV01000083.1| GENE 25 27899 - 29419 1317 506 aa, chain + ## HITS:1 COG:SP1529 KEGG:ns NR:ns ## COG: SP1529 COG2244 # Protein_GI_number: 15901374 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Streptococcus pneumoniae TIGR4 # 11 493 37 516 529 216 32.0 7e-56 MLGSYHNQLNAQALFNSSYTPYALFLSIGTAGLPSVIAREVSQLNSQNRYKDSLYITKLG FAIMLVMGIACGILLYVTAPMIAKNSPVDSVASATISIRVLVPAVVILPSMSMVRGWFQG NNDMKPYGISQLWEQFARILFILLATLLIIEVFHHDYVTAVYFSVFGACVGAIASYLYLF AYMRKQWGHYRELIENSEPRALNNVSRSLLNLWYASIPFVLLGSFITVTQLVDQLLFKQI LISFSHMSKSYVSYLYTIFSANPSKITTVIISLATAVSETSLPLLAGLKYKANDSQESIR KLLLENYRLLLFVLLPVVALGAFAASPIYTVLFSHDSLGAYYLVENIVQSLFAGLVMNSL TLLLALNMNKLAVIYMVEGVLVKIILQVPMTMFMNADGAILSTDISFLLVIWLSYHKLNK TYGVKMGSLLPIIVSNEIYIILLFVYQILFGYRFNDLGRVGSFGYLAIFGLVFLGIYVLL ANWMKTSETIFGKKIGYRYYRYKHFE >gi|256541391|gb|ACPV01000083.1| GENE 26 29522 - 29758 388 78 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01959 NR:ns ## KEGG: LCRIS_01959 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 78 1 78 78 112 100.0 3e-24 MPRKHFELNSDVNKLIEKYDEINNVDFNKLVNKALRFYLVNQMNYKDVQDALNKADNEAS KYIDEAMRSSMGDINRNY >gi|256541391|gb|ACPV01000083.1| GENE 27 29805 - 32345 2498 846 aa, chain - ## HITS:1 COG:L111162 KEGG:ns NR:ns ## COG: L111162 COG0577 # Protein_GI_number: 15673086 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 3 846 6 896 896 680 43.0 0 MQKTILWKDAWQAITHSLGRYIAIILLIALGTFAFTGLKMAGPDMRATGAEFFAKHNLAD VTVTSNYGINSTDRLTIQNLPEVKEATFGYFQDVKIKNQPDTLRIFSQSDNLSSYELIKG HFPKNKTEIALSYLLQKKYRLGQNITFNKPGILKNKTYKIVGFVKASEFLDKNQIGQTNI GSGHLTGIAVANHNAFAAPVYQIARIIFKNTANLSPFGIAYRNRVYNDQTKLQTALNQNR ADKYDKYRAMYQKQYRQAAAKQLLKRGIVVNPAQIKVPQNKLKIAYPNYVINSREESQGY ASYRADSERVEVLANVFPVFLFAVAALVSLTTMMRFVEEERTNIGTLKALGYGNGAIAIK FLLYSTSAAILGVILGASLGYTFLPNLIIKAYLASSTLGTDYQLNFAWGPLLISLTIALL ATTVVSMITLAQTLREQPSALLLPKPPKNGSRILLEYIPFLWKHMRFSAKVTARNIFRYK SRMLMTILGVAGCTGLLVMGFGIRDSLHGIGNIQYSEVQKNDVIALKNRHVNTTERQKLN KIFTSHDVTQTTAVQYQQLTKHLDSTGATENVMLIAPQSTKNFSKSINLQERQSKKKLVL SNNGVVISEKLATILHAHKGSTISLKNEHGKLLKFKVSGICEMYLGHYIFMSPAEYAKAT GKKFTTNAYLVTMAKHSPGNISHISQKMIKTGAIETVVSTSSNRKLLSSFTGSLNEVILI LILISGMLALVVIYNLTNINVAERIRELSTIKVLGFYDNETTMYIYRETIILSALGIIVG FGFGWWLHHFIITSLPPDVAMFDPNMYPLNFVFSALIPAIITAILAIVVHHKIKRINMLD ALSSID >gi|256541391|gb|ACPV01000083.1| GENE 28 32355 - 33059 266 234 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 199 1 200 223 107 35 2e-22 MMAYINLKNNTKIYQSGDTTIYANKNITFSIDKGELVIILGSSGAGKSTLLNILGGMEPN TSGDVIVAGKNIAKYNAKELTTYRRNDVGFVFQFYNLIPNLTAKENVELAAQIVPDAMSA DDALQYVDLGQRENNFPAQLSGGEQQRVAIARAIAKKPALLLCDEPTGALDYKTGKRILK ILQNMSRQNGSTVLIVTHNAAIAPIADKVIRIHDGSIQKVQHNLHPADISTIEW >gi|256541391|gb|ACPV01000083.1| GENE 29 33151 - 34455 893 434 aa, chain + ## HITS:1 COG:lin2906 KEGG:ns NR:ns ## COG: lin2906 COG1455 # Protein_GI_number: 16801965 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 25 414 35 425 450 120 24.0 5e-27 MVNRITNIFLKLRRLAIFRIFQRTLVMLMPIAVIGAYFKLFRDAVFSPDSFIYNIFNFDI TLPDRFWYAGAFVSQGMVRVTFGLFGIYAAYFAARYTARLYRKDSTMAGMTAVIVIMFCA YANNLANNASDHSPFSSSVLKINAVLLALLIGYGVGQIFHWLGKEHKPVDFEHAARIKER AWNAFIPTIFAIFCGIVLGIIIYEFQIKFLNSSTFKGLVTQIQESNNILLIALLTIPVFL LSWMGIGYPLASLSTTSNSISAANLNFALKHGSAWNVPYKYLGSSLFYPYAEMGGASIVL AMIVIILIYSKNKDSENIAKVNLLPAAFGSTGGMMVGMPIILNPLLLPAIVIIPIINILL AAGAIFCHLIQPCAYPVLSGTPGILVSFFGSNGDWSNLVFSILLFILDIIMFIPTMKLGL RLERGLKDYEEKND >gi|256541391|gb|ACPV01000083.1| GENE 30 34448 - 35326 710 292 aa, chain + ## HITS:1 COG:lin2722 KEGG:ns NR:ns ## COG: lin2722 COG4814 # Protein_GI_number: 16801783 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Listeria innocua # 48 274 42 276 291 96 27.0 6e-20 MINLVQNPNFKWLAIVLVLLVALAIPGYSWMKADNHARAERRKSLLSPVIMIPGSSATTE RFNQLVKQLNQNTPTKHSVLKIKVSTNGTLSYSGKINKNDNEPFIIVGFENNHDGYSNIK KQASWFDQAFYALSESYKFNNFKAFGHSNGGLIWTYWLEHYYCYYSDEIKIKRLMTLGTP YNFGEKNINHKTQMLENFIKNKDKLPKNLIVYSLSGGKNYESDGIVPEASVAAGKYIFQN QVKSYTAMTVTGVEADHSDLPQNKQVIKVIKQYLLEPRKLSEPQNIGQAKGQ >gi|256541391|gb|ACPV01000083.1| GENE 31 35657 - 37783 1351 708 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 25 661 143 789 815 525 42 1e-148 MAYFDNDFDNLFNELNSSFFNDDFGSRRNSKGSSGSIPINYSSSMGAAPQTIQQNPQQPN EKPIGVDLVEEAKNNKFDPVIGRDEQIDNVIEILSRRKKNNPVLIGPAGVGKTSIVEGLA ERIASGNVPAKMANMHIISVNINDMVAGSSLRGSFEERLKKVIDKAKSDPNIVLFIDEIH NIVGAGSTDSENNNGDAANILKPALASGQLKLIGATTTSEFQRIEKDPALSRRFQAVQVP EPSTDVAVKILEGLKKKYEDYHHVKYSDDSLKLAVELSERYIQGRYLPDKAIDLMDEAGA KKALLVQPTDEKSLKNQISALEAKKTEAAKAEDYDKASEIKSKIAELEKQLKNVDSKNTP EVTEKDIYAIIEQKTKIPMSELHADEAQKNLDLAKKLKKNVIDQDRAIDVITDAIARKQI FKDSDRPTGSFLLTGPTGVGKTELAKQLAIQLFGNKEHLIRLDMSEYQDEMAVNKLIGSA PGYVGYGEGGQLTEKVRHQPYSLILFDEIEKANPQVFNALLQIMDDGRLTDAQGRTVSFK DTILIMTSNAGFSDKLLEDGKVDQDKLISALENYFRPEFLNRLDAIVPFNSLTEQDMGKI INIYLKKMSHVLAKKGVTVEVSDEAKAFLAEKGYDKKFGARPLRRVVEQNLETPAAKLIL QKPDTKKIEFTADDKHLYLNGEAIFDISPKVEEKVKEDEAKTEDKKED >gi|256541391|gb|ACPV01000083.1| GENE 32 37897 - 38529 643 210 aa, chain + ## HITS:1 COG:lin1308 KEGG:ns NR:ns ## COG: lin1308 COG0681 # Protein_GI_number: 16800376 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 34 197 30 179 188 117 40.0 2e-26 MAEKKEEKESWGKFFLDILIIWVILIGAYLLLFHFVLSNDTVSGPSMQPTFQNGDRLIAE RHAQIKRGEVVIVKAPDEPGALYIKRVIGLPGEKIVSKNNQIYINNKKIAQPWLKQGTKL IDNGSDTFYSETQNFTMQSLMRARTYQQYFTRAQIKYVQDTGRIPKGTYFVMGDHRSVSK DSRYIGTIKRSSIVGVVKVRYWPLNQFKVY >gi|256541391|gb|ACPV01000083.1| GENE 33 38693 - 40042 1224 449 aa, chain + ## HITS:1 COG:BS_ydgF KEGG:ns NR:ns ## COG: BS_ydgF COG1113 # Protein_GI_number: 16077629 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Bacillus subtilis # 7 445 15 454 458 439 51.0 1e-123 MDEKPRLKRGLKSRHVTMIAIGGAIGTGLFLGSGSAIHSAGPSIILSYLIVGIITFFMMR ALGELILADPESHSFLESIKKYLGKRAEFVAGWMYWACWLSLAMADLTATGIYLRYWFPW LPQWVGPLVIVILLMLINMVNVGLFGELESWFSMIKVMAIVVLIITGAVMLLLHTHVKGG YVSLTNLVNHGGFFPTGIWGFLLSFQMVVFAFVGVEIVGQTASETANPQKDIPKAINTLP VRIGLFYVGSMLAIMSVYPWNHITTTSSPFVQVFTGIGVTAAAGILNFVVLTAAMSATNS AIFSTSRSLYSLARNGHAPKRLGELTKKAIPMNASMTSSLILFVVVALNYLMPAEIFSVV STVSTICFVIVWIMIMAAHIVYRKQNKQNLGSFKMPGYPVTSWLTLAFYIGILILLFFIK STQLALIISILFAIFLAISYSFVRKNDKV >gi|256541391|gb|ACPV01000083.1| GENE 34 40115 - 41488 1258 457 aa, chain + ## HITS:1 COG:SA2109 KEGG:ns NR:ns ## COG: SA2109 COG1113 # Protein_GI_number: 15927896 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 7 456 5 454 459 472 56.0 1e-133 MAKKAPELKRSMTAGQMEMISLGGAIGVGLFMGASSTIKWTGPSVLLAYIFVGVILYIVM RALGEMLYVDPGTGSFADYASEHVHPIAGYLAEWANVFQYIVVGISEVVATTEYLRFWWK GTSDWVAGVIIILFLLVANLASAKAYATLEFWFAMIKVVTIILMILLGFAVILFGFGNGG HPVGFSNLWSHGGFFTGGLKGFFFSMAIIVGSYEGIELIGISAGEVSDPHKAIVKSVKSV LWRILIFYVGAIFVIVTIYPWNKLDSIGSPFVTTFAKVGITAAASVINFVVLTAALSGAN SGIYSSSRMLYKLAHEGEAPKTFGHVSKRIVPSHAIIGITSGIFVGFMLNVLAQFLNKSL ANVFVIVYSSSVLPGMVAWFVILLAELRFRRKNPHLMENHPFKLPLYPYSNYFALIMLVV IVVFMFINPETQISVAVGAAVLIIAALIYVVKHQKDK >gi|256541391|gb|ACPV01000083.1| GENE 35 41550 - 42650 546 366 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01950 NR:ns ## KEGG: LCRIS_01950 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 253 1 253 254 474 99.0 1e-132 MDNPFNPSFGRIPAVYLQRKKLIADVSQGIENLNSSYTISIVYGMRGIGKTVFLTAMDRK ISAYPDWIVVNLAMGMKLLPSFINSLYLNADSKLKKSFKSIEGLNFSNFGLSLSTDVSKL TYQDILTNMFDEVRKNDVKVLITLDEVKLCQELKDFARCYQLLNRQGYPIALMIAGLSEN ISELKNENITSFLLRGKRIALSALNLSQVEASYSKVFKESGYQVSKKILEKMALMTMGYS YAFQLLGYLVLKAAKKSKVIDQNTLECIKSEYLLVLKQNVYTKVLSSLSKQDRKFVLAMA QSPKHCVSIKEIHERLNRPSNFVANYRRRLLDDQVIKSTNYGEVAFTLPFFKEYVLRQYR FEQGLE >gi|256541391|gb|ACPV01000083.1| GENE 36 42881 - 43786 704 301 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01948 NR:ns ## KEGG: LCRIS_01948 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 301 1 301 301 583 100.0 1e-165 MKYRKLFAFLATIVCFIAINTNAKADSLNDVNKNVAKIANEQNFHSLAQDKLKNENVKKD VPILKNGTVKIHNNFNATSSHYSAYTFLAEIPDTVVKFHTSQEYVDGQFKINFYIDSITG PAPAAISVQLQFYSEPSLSGPITTNTASPIVKEGNITTGLLGSAVFPAATTFFAVGGAWG MVGYNGNSATYPISLSSIYLQNKIGQNFPEYVDPVSKKDAETPINTTWSRLPSSPVWTTM DRYYYIKEFSERYGNQSKEYWAENQVHHIRPRIYGGNNDFDNLMPVPIEAHKLITKWFIN Y >gi|256541391|gb|ACPV01000083.1| GENE 37 43788 - 44267 182 159 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01947 NR:ns ## KEGG: LCRIS_01947 # Name: not_defined # Def: YobM related protein # Organism: L.crispatus # Pathway: not_defined # 1 159 1 159 159 324 100.0 7e-88 MDNIIDNINLISKKCSVDVPIFGFGGVYYCKFKLNPPVAENKINRLSGISVPNDLIEFWI QANGAELFIDSFQGIELGGARCRIYTIEYVLNQLVKTPNYLPILWLRDEGEMGINLDRYN QKQSYLTYPGIEEQYFDFSFKQWLETYLACNGNPFWNLV >gi|256541391|gb|ACPV01000083.1| GENE 38 44427 - 45155 936 242 aa, chain + ## HITS:1 COG:FN0505 KEGG:ns NR:ns ## COG: FN0505 COG2071 # Protein_GI_number: 19703840 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Fusobacterium nucleatum # 3 242 4 241 243 258 56.0 9e-69 MTKPIIGISGSVIIDDGGIFPGYHRSYVNEDYVDSVVQNGGVPYIIPFTENDEVIREQLN HVQGLILSGGHDVDPRFYGEEPMQKIGATWPERDHFDMRLLKLAEENGIPVLGICRGAQI INVAHGGTLYQDLSYRKELTLKHMQGHTPTLPTHSMEVEADSKLAEILGKTEFRVNSFHH QLIKDVAPDLKAVATAPDGVVEGLENKKGNVIAVQWHPEMLHRNSDVAFMNNLFKFVVDN AK >gi|256541391|gb|ACPV01000083.1| GENE 39 45168 - 46559 1775 463 aa, chain + ## HITS:1 COG:FN0504 KEGG:ns NR:ns ## COG: FN0504 COG0531 # Protein_GI_number: 19703839 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Fusobacterium nucleatum # 9 462 1 453 453 361 51.0 1e-99 MNEKTGDKLGFWSIVLLAINAIIGSGIFLTPGSVVQQAGSKALVVYLIAAIFAAILAISF AAASKYVTKSGAAYAYSKAAFGKKIGFYMGVLRYFSASVAWGVMAVGVIKSTISIFGGNP NKAINVTIGFLILMAIITVINLFGQKVVKYVMNLATIGKLAALVLIIIAGVVLLITTGAS SNLGQVDQLTQNGQKIVPTLTTTTFVMAIVSAFYAFTGFESVASGSEDMKNPEKNLPRAI PLAILIIAVVYIGVVAVAMVLNPRALMTTKQVVAIAAIFNNEILRDVILVGALVSMFGIN VASSFNAPRILEAMAREGQMSQALTKRTKNNFPIRTFFISVGLAILIPMAFEYNMVNLIT LSAMVRFLGFIVVPLAVIQFYRGKAKEDILKANKSVMTDVIVPILSGVIVIFLLVEYNWK AQFGVVNAAGQVIGVNWYAIAMMVFGFVLLPLIMAWISRRERK Prediction of potential genes in microbial genomes Time: Wed May 25 05:39:36 2011 Seq name: gi|256541390|gb|ACPV01000084.1| Lactobacillus crispatus 125-2-CHN cont1.84, whole genome shotgun sequence Length of sequence - 1427 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 41 - 1054 1377 ## COG2502 Asparagine synthetase A Predicted protein(s) >gi|256541390|gb|ACPV01000084.1| GENE 1 41 - 1054 1377 337 aa, chain - ## HITS:1 COG:FN0776 KEGG:ns NR:ns ## COG: FN0776 COG2502 # Protein_GI_number: 19704111 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthetase A # Organism: Fusobacterium nucleatum # 9 337 3 327 327 372 56.0 1e-103 MTLILPKDYHPTLTVRDTEAAIVFIRETFQDKLAEILGLQRMSAPMFVEKKTGLNDNLNG VERPVAFDMKAMPKEDTIEVVHSLAKWKRLALKRYGFGMHEGLYTNMNAIRRDEDLDNFH SIYVDQWDWEKIISKQERNTDTLEVTVMNIFKAIKATEKLVAARYPGSTYRLADHVSFIT TQELEDRWPDLSPEEREDKIAKEEKAVFIMKIGDKLKRSGEPHDGRAPDYDDWQLNGDLV FWYEPLNSKIEISSMGIRVSEESLREQLKKAHCEEREKLPFHQMLLKGELPYSIGGGIGQ SRLCMLLLGKAHIGEVQASIWPEDMVEACEADDIKLL Prediction of potential genes in microbial genomes Time: Wed May 25 05:39:39 2011 Seq name: gi|256541389|gb|ACPV01000085.1| Lactobacillus crispatus 125-2-CHN cont1.85, whole genome shotgun sequence Length of sequence - 6516 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 5, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 57 - 1115 839 ## COG3589 Uncharacterized conserved protein + Term 1119 - 1158 4.7 - TRNA 1192 - 1265 86.9 # Pro TGG 0 0 - TRNA 1274 - 1347 71.3 # Arg ACG 0 0 - Term 1408 - 1452 5.1 2 2 Tu 1 . - CDS 1545 - 2537 1031 ## COG0516 IMP dehydrogenase/GMP reductase - Prom 2624 - 2683 8.8 + Prom 2611 - 2670 11.5 3 3 Op 1 1/0.000 + CDS 2735 - 4024 1702 ## COG0104 Adenylosuccinate synthase 4 3 Op 2 . + CDS 4028 - 5326 1529 ## COG0015 Adenylosuccinate lyase + Term 5333 - 5372 6.8 + Prom 5370 - 5429 6.1 5 4 Op 1 . + CDS 5453 - 5713 77 ## gi|256843925|ref|ZP_05549412.1| predicted protein 6 4 Op 2 . + CDS 5700 - 6041 254 ## COG4226 Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters + Term 6048 - 6083 3.5 + Prom 6064 - 6123 5.3 7 5 Tu 1 . + CDS 6155 - 6481 316 ## COG5294 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|256541389|gb|ACPV01000085.1| GENE 1 57 - 1115 839 352 aa, chain + ## HITS:1 COG:L143292 KEGG:ns NR:ns ## COG: L143292 COG3589 # Protein_GI_number: 15673111 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 337 1 338 353 263 39.0 5e-70 MLGFSVYLGHDLTSENYNYLLTMRNSGFTCVFTQLAVPDTDSETILNRLADLTNWCQKLD LKIIADVTADDLQDLGINVNSVEQIKSLSLTGLRVDHGFSTDIIAKLSKEMPIVLNASII TQQNIDDLRYSNANFEKLTAGHNFYPRPETGLDAHWMQKKNEWLKQYGLKTAAFISGNGK LRGPIFAGLPTLEKQRYENPLAAILELKDYDCDHIFVGDPQLTRDAIESITNYQKQGAIT LHLDTDIPELFGNDWHNRPDVARDVVRLKESRKKMFLSTEPQDNIYARPTGSVTIDNHLY PRYEGEIEITKRDLPCNEKVNVLAQVKDYDLPLLKYVDSDTQIIFRRATKGA >gi|256541389|gb|ACPV01000085.1| GENE 2 1545 - 2537 1031 330 aa, chain - ## HITS:1 COG:CAC3471 KEGG:ns NR:ns ## COG: CAC3471 COG0516 # Protein_GI_number: 15896710 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Clostridium acetobutylicum # 10 330 5 325 327 483 71.0 1e-136 MSNYFSMEAFDYDDIQLVPNKGIIKSRRDADTSVKFGNRTFKIPVVPANMESVIDDNLAI WLAQNDYYYVMHRFEPEKRISFIKMMHQKGLFASISVGIKDSEYDFIDELVKENLKPEYI TIDVAHGHSVYVIKMIKYIKEKLPDSFLTAGNIATPEAVRELENAGADATKVGVGPGKAC ITKLKTGFGTGGWQLAALRMCSKSASKPLIADGGIRHNGDIAKSIRFGATMVMIGSMLAG HEESPGNVIKINGKTYKQYWGSASEVQKGAYKNVEGKQMLVPYRGSIKDTLKEMKEDLQS SISYAGGRDLNSIKLVDYVIVKDNIFDGDK >gi|256541389|gb|ACPV01000085.1| GENE 3 2735 - 4024 1702 429 aa, chain + ## HITS:1 COG:SP0019 KEGG:ns NR:ns ## COG: SP0019 COG0104 # Protein_GI_number: 15899967 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 427 1 427 428 595 65.0 1e-170 MTAVAVVGSQWGDEGKGKITDFLSKDAAVAVRSNGGNNAGHTIDINGQTFKMRLIPSGIF AAKDNTVIGNGVVINPEVMFGELENLEKSGIDTSGLRISNRAHIIMPYDIKQDEYQEEAK GANKIGTTKNGIGPTYMDKASRIGIRVCDLLEKDTFEEKLRANLEVKNELFTKVYGKPAL KFEDIFDKYYEYGQRMKKYVTDTSVLVNDALDQNKKVLFEGAQGVMLDIDEGTYPFVTSS NTISGGICSGIGIGANRLDTVIGVCKAYTTRVGAGPFPTELLDEVGDRIRETAHEYGTVT GRPRRVGWFDSVALRHSKRVAGINGLSLNLLDVFSGFDKIKICTAYELDGEKIDYYPASL KELYRCKPVYEELPAWDEDITQVKTWDALPENAKKFLNRVSELVGVPLVTVSVGPDREQT IVLKNPWEM >gi|256541389|gb|ACPV01000085.1| GENE 4 4028 - 5326 1529 432 aa, chain + ## HITS:1 COG:L88187 KEGG:ns NR:ns ## COG: L88187 COG0015 # Protein_GI_number: 15673623 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Lactococcus lactis # 1 428 2 429 431 581 68.0 1e-165 MLERYTRPEMGKIWTDENKYAAWLEVEIAATKAWAELGEVPEADAEKIAKNASFTAERVA ELEQVTHHDVVAFTRTVSESLGPEKKWVHFGLTSTDVVDTAQGYLLKQADEIIRKDLHEL KATIAEKAKKYKYTVEMGRTHGVQAEPTTFGLKIARWYAEINRDIERFEHAAKGVESGKI SGAVGTFANVPPAVETSVMKQLGLTQQPITSQVLPRDLHAEYIATLALIATSIENWATEI RGLQRSEIHEVEEHFRAGQKGSSAMPHKRNPIGSENLCGMARVMRGHVVTAYEDVALWHE RDISHSSAERVILPDTTIGVDYMLHRFNRILTNLDVFPETMLKNMDRTYGLIYSQRVLLK LIDEAGLSREKAYDMVQKLTAKSWNEQKQFKPLVENSEIMNYLSKEDIDDAFDYHYHLRH VDDIFKKLGLDD >gi|256541389|gb|ACPV01000085.1| GENE 5 5453 - 5713 77 86 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843925|ref|ZP_05549412.1| ## NR: gi|256843925|ref|ZP_05549412.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 86 1 86 86 134 100.0 2e-30 MSKLEKLLIKLYSHPRTFDFKDAKTLLHELDYQLDNKGKTSGSRIIFKKGSDRIILHKPH PRKELLPYQIKQIQDKIKEMNKDEKN >gi|256541389|gb|ACPV01000085.1| GENE 6 5700 - 6041 254 113 aa, chain + ## HITS:1 COG:all5276 KEGG:ns NR:ns ## COG: all5276 COG4226 # Protein_GI_number: 17232768 # Func_class: S Function unknown # Function: Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters # Organism: Nostoc sp. PCC 7120 # 8 108 3 103 108 88 41.0 3e-18 MKKTNQYMKYKGYEGSIEYTLEDKILFGKVQGIKSLISYEGNTIDELEKDFQGAIDDYLM SCKEDGVIPEKPFKGNFNVRIDPSLHEKLANYAATKHQSLNASVEEAIKRFLA >gi|256541389|gb|ACPV01000085.1| GENE 7 6155 - 6481 316 108 aa, chain + ## HITS:1 COG:SA0887 KEGG:ns NR:ns ## COG: SA0887 COG5294 # Protein_GI_number: 15926621 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 14 101 9 97 106 70 42.0 7e-13 MNKSTIKTAFVTALVLVVGVICIFSFHNSFTDRLNPFISQETSYAQVDKGTQRYYNVKAY NPKTKKNLLLKKVGGYDPSGQYISIQHKGQYVKSIKYITRKQFMQAKE Prediction of potential genes in microbial genomes Time: Wed May 25 05:39:49 2011 Seq name: gi|256541388|gb|ACPV01000086.1| Lactobacillus crispatus 125-2-CHN cont1.86, whole genome shotgun sequence Length of sequence - 13658 bp Number of predicted genes - 18, with homology - 18 Number of transcription units - 12, operones - 2 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 57 - 416 348 ## LCRIS_01929 hypothetical protein + Prom 436 - 495 4.4 2 2 Tu 1 . + CDS 519 - 1013 568 ## LCRIS_01928 putative protein without homology 3 3 Tu 1 . - CDS 1039 - 2436 1005 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 2545 - 2604 16.2 - Term 2575 - 2608 2.4 4 4 Tu 1 . - CDS 2616 - 3647 986 ## COG1434 Uncharacterized conserved protein - Prom 3671 - 3730 10.3 + Prom 3678 - 3737 7.2 5 5 Op 1 . + CDS 3759 - 4391 518 ## LCRIS_01925 hypothetical protein 6 5 Op 2 . + CDS 4406 - 5050 513 ## LCRIS_01924 putative protein without homology 7 5 Op 3 9/0.000 + CDS 5116 - 6024 602 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 8 5 Op 4 9/0.000 + CDS 6107 - 7027 807 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Term 7031 - 7067 3.3 9 5 Op 5 . + CDS 7105 - 8034 611 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Term 8004 - 8051 7.2 10 6 Op 1 . - CDS 8054 - 8335 289 ## LCRIS_01920 putative protein without homology 11 6 Op 2 . - CDS 8325 - 8642 232 ## gi|256843938|ref|ZP_05549425.1| predicted protein 12 6 Op 3 . - CDS 8635 - 9342 655 ## L115661 hypothetical protein - Prom 9373 - 9432 7.5 - Term 9429 - 9475 3.4 13 7 Tu 1 . - CDS 9488 - 10363 337 ## LCRIS_01919 transcriptional regulator - Prom 10383 - 10442 7.9 14 8 Tu 1 . - CDS 10484 - 10834 361 ## LCRIS_01918 putative protein without homology - Prom 10868 - 10927 7.2 + Prom 10880 - 10939 5.9 15 9 Tu 1 . + CDS 11029 - 11514 452 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) + Term 11531 - 11566 7.1 - Term 11518 - 11553 7.1 16 10 Tu 1 . - CDS 11560 - 12246 984 ## COG3442 Predicted glutamine amidotransferase - Prom 12276 - 12335 4.8 17 11 Tu 1 . - CDS 12615 - 13025 526 ## COG3077 DNA-damage-inducible protein J - Prom 13126 - 13185 7.1 + Prom 13102 - 13161 11.9 18 12 Tu 1 . + CDS 13219 - 13657 184 ## lhv_1140 ABC transporter ATPase component Predicted protein(s) >gi|256541388|gb|ACPV01000086.1| GENE 1 57 - 416 348 119 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01929 NR:ns ## KEGG: LCRIS_01929 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 119 1 119 119 192 98.0 4e-48 MKKTLTFVFRLLVLLCGIALAGFIVWQLFTNAPMLDVNVQTKGPVIIVIYSLVALITLGA AISFFTDKNMGSTIFLGGLLTVIAIILWIQNQDLADIYRWYFIYGLLVSLLSPFFRKEN >gi|256541388|gb|ACPV01000086.1| GENE 2 519 - 1013 568 164 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01928 NR:ns ## KEGG: LCRIS_01928 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 164 1 164 164 308 95.0 6e-83 MLENEMSPAMVDHMAAGIMKKYNEQLLPAVQRMLPELNIQEAKSLDDPNRNVLDEKAIVH VIARDKRRNKYGLIIQVGSQEPGENILEVANAYQEEIIYGGLGGSPEKEFKATYVIFLCR IDPFGKGKPRYEYYGGKYNKETHQTSAAPNVIFINIDEDSKGYA >gi|256541388|gb|ACPV01000086.1| GENE 3 1039 - 2436 1005 465 aa, chain - ## HITS:1 COG:CAC3007 KEGG:ns NR:ns ## COG: CAC3007 COG0488 # Protein_GI_number: 15896259 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 11 461 4 460 528 144 26.0 3e-34 MSETKFNKTLLSVSHVDFSYPKRNLFTDLNFSIANGERVALVGPNGIGKSTLIDLIRKQI QPDDGQIICHGEINYVPQVNDQTVINDSKSAGEKRLALIENTIWLPSSLLLLDEPTVYLD DTNIQNLLYLLKNYDGAILVASHDLDFINQLCERTIILQPNNAVYYPGNYAQYLEQKQLD KQAVYNFNEKRDILKQQITEKVSTLKQKSTDYNHFAKTQDNTGRYPSRSHDHVQKGLNSR LKRAERELAKLPEKQHLYQHQLKLPEFKKWPTKIHNYSIKIDQLLSPQNKTLLSNTQLNL QTADIIGLIGPNGCGKTTLLKYLEHYINQQQSLPPASYIGLNTTKQKKPATVADFFHETI LSKTEVKRLLVKMDMFVDLTTRLTDLSGGEFAKLALIKQLYLEQESILLLDEPTNYLDPE SVTALAQMLKQSHLTCIIASHNCKFLTQFCQQIYKIKQQRLIELH >gi|256541388|gb|ACPV01000086.1| GENE 4 2616 - 3647 986 343 aa, chain - ## HITS:1 COG:lin1003 KEGG:ns NR:ns ## COG: lin1003 COG1434 # Protein_GI_number: 16800072 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 83 339 76 337 344 119 33.0 9e-27 MNYPILITILIFLLCFGRFIWIITHERRSLRAGVSLVITLFSFLFLGVVILVNIADLDPH YKDWILPLFVIALFAVMAGTIIFALTLIIMFFYDGIKIIIKEGNRWTNYLSLGMGISIIF FLFLYPLVGRISHDSWLKYPYIFLWLVIIYLVTIMMMYTLTSWINLINWHMPHLDYIVVL GAGIMGTKVTPLLAARISRGIEIYHKNPGSKLIMSGGQGPGEDIPEAVAMAEYAEKLGIN KNDIIIENKSKTTQQNLQFSHALMKPNSRFCIVTSSYHVYRALVLAKRQGLKCTGYGAKT KWYFTLNAFVREFIAYLVITKKMQLTIIGFLAAIMIAAAAFHF >gi|256541388|gb|ACPV01000086.1| GENE 5 3759 - 4391 518 210 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01925 NR:ns ## KEGG: LCRIS_01925 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 210 1 210 210 353 100.0 3e-96 MNGNISDHMNKRELKHWLSERKFSRCVLYFELAYVVVLLFTLMFDFKVFMHLIAFQGIAI LIYYSIGAFLDRRIVIKKHDTFWETLTSIRFTKNVFLRLFEFLLFWANIGLSIAFARQLW TDILAKPLTGNFANLFENVWLIGDGLYVVLLFCVEVGILGGNRKLIRASSVLTVVLSLIL LFMQPSMQVATVIGLILSGANFWLSFRNKI >gi|256541388|gb|ACPV01000086.1| GENE 6 4406 - 5050 513 214 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01924 NR:ns ## KEGG: LCRIS_01924 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 214 1 214 214 358 98.0 6e-98 MQDPNSKTFQTIFKNKQRLHFFLYAELIYIVILLLTVIYAFPIFMRLIVIQFAVIAIMLI GSGLLNWYDKKTGRAVVAKKDHEFFLKTFIDETPTQKVKSVFRTISFITILAAFVMVFFG CAQIFTDLSVKVKPSDLAIIENLLLLVDSFYVLTMFGIMCGLLFGKKRMERNSSLAAGFL SLVLIAFHPESWLLFTIGLLASVSGYTLYRLNQL >gi|256541388|gb|ACPV01000086.1| GENE 7 5116 - 6024 602 302 aa, chain + ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 2 288 10 297 306 172 35.0 9e-43 MNQRYKGLTLAVVGACFWGASGTAVEFLFSSTNVNTAWLVGLRLLFSGALLMIYACWKYL DQVKAMLHDKKVIIMLIIFAFLGMGSSQLSYFVAVKYSNAPTATVIQFLAPVFIIIYSSL RSKMWPRRIDAISIVVAVVGTFILATGGRFDQLALSPLACFWGLIAAFSEAINTVLPGKL FKKYGPIPVIGAAMLVAGIAFLPIYFTQPMPKLAPVDVWVIVYIIIGGTLLAYTMYLSSV QYIEPSTVGMLGALEPLIATILSVSLLHADFGPMDMLGGFLIIVATFMQLMPSRNPIKKN DE >gi|256541388|gb|ACPV01000086.1| GENE 8 6107 - 7027 807 306 aa, chain + ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 1 293 6 299 306 172 37.0 5e-43 MVTQKQRRLWAFLAGLACVMWGISGLFAKSLFNTSPEITPMWLSQIRMVTSGIILLIVAA VLKQKPIATMKNKHDAWTIIAYGIFGLLPVQLFYFIVVQQANASIATILQFVGPFFVMGY LAVTHKQVMRRIDVLAAICAFIGVVLLATHGRFNHFALTPSVLFWGLLSAVGVATNTLIP ISVLKRVSSLVVTGWGLLSAGICLMIVHPQMPHIPNTPHVWLDVVAVIVIGTLIPFQLMT NSLRFIKASTASLLDAFEPFSATVGSVICFGLVMTPMDWIGSILVVLAAMALNISPKKKK VKKTHQ >gi|256541388|gb|ACPV01000086.1| GENE 9 7105 - 8034 611 309 aa, chain + ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 1 293 6 299 306 169 35.0 6e-42 MVPAKTRRLWTFLAAMAAVMWGVSGLFAKGLFDISPKLTPMWLTQVRLIISGAVLLIASG FLKQKPIATLKNKHNVLVIIAYGIFGLLPVQLFYFMCIQVANASIATILQFIGPFFVLGY LAITHKQVMRRLDIIAALCAFLGVFLLSTHGQFNHLAITPVALFWGILSAFGEAAYTLIP VNIVKKVSSMVVTGWGMIFAGISLLIIDPQFHAVPNKPEVWLYTAAVIVIGTIIPFQIMA NALRYVIPSTVSLLDAFEPFSATVGSVLFFGLVMMPMDWVGSVLVVVAAMALNLTPKQKK NKIKQKTEL >gi|256541388|gb|ACPV01000086.1| GENE 10 8054 - 8335 289 93 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01920 NR:ns ## KEGG: LCRIS_01920 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 93 1 93 93 114 95.0 2e-24 MDTKILTAIILIIVVIVLAYSPFYQRYQLFYLNKVGYWDILIQFLVIAGINLFIGLKYGL GALFLLIVPIPLDIIFLISMIYSYFRIRKLKRK >gi|256541388|gb|ACPV01000086.1| GENE 11 8325 - 8642 232 105 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843938|ref|ZP_05549425.1| ## NR: gi|256843938|ref|ZP_05549425.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 105 4 108 108 155 100.0 6e-37 MTSIIVFIAVTIMAIFTAISIYKIINARVTYKKYYPYRKLVTVTLISLPWIFLVFPFTLD WSTYITLVIVRIPYTIIWSLLTAVGLYIDIKMQNKYRHHRNNNGH >gi|256541388|gb|ACPV01000086.1| GENE 12 8635 - 9342 655 235 aa, chain - ## HITS:1 COG:no KEGG:L115661 NR:ns ## KEGG: L115661 # Name: yrbG # Def: hypothetical protein # Organism: L.lactis # Pathway: not_defined # 3 223 2 203 213 69 31.0 8e-11 MKKSIKLVNVLSVSVLTLGLVAPVTTVSADTANSDTTESIKNNETTSTQYTVPSQFKEID KYVTVKDNQYVLSLPQNSNINTQAKKNAESQLNIANQVVKNQNLVIDPQTKFADPISLDT NSPFIALAKRPANENRTYPWGVRSIFRSNAAVRTRVNIYNNIYIGALAVGDVSGTAGMVG FPWASLIGTLGSAAVSDRCQTWANRLQSYNNSHRKSKIYQDINWALQDSEGVWHD >gi|256541388|gb|ACPV01000086.1| GENE 13 9488 - 10363 337 291 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01919 NR:ns ## KEGG: LCRIS_01919 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 290 1 290 292 505 94.0 1e-142 MNNQIFGPKFRQLRKQQHITLAKAATGITSRQSLGNWENSKGELDFEKVLLLLKKINVQP IDFLESSISSYLKQTTSQISAAYVNNQVDKLLHYANKYLDISHRNLTDRVSFLRAAVACN YYMDLTSIDLTTSSDKLRIISHFNKILNGEEIWNFEDIYFLGNTQNLMSPRDIYSLAYSL NYYRQKHKNDNREWINAVYNTLINAEFVLIKTNIKLATDLDLLLRQKWDLPDNYAFEKIR QNFMHELLKYISTQDESAITQQLHILELEHLSDLKTGFETAYEQVNKIYFQ >gi|256541388|gb|ACPV01000086.1| GENE 14 10484 - 10834 361 116 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01918 NR:ns ## KEGG: LCRIS_01918 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 116 1 116 116 134 98.0 8e-31 MDKIDSYVRHFLILIALILGLSLVSELREIIAYDSSTIGIISLTTAIICTFASGITLQFH KLNWLTISLILILSAIVILFWFKTYTFGLVVSIFLIYNIIVFLVCVTNLIFQKKIE >gi|256541388|gb|ACPV01000086.1| GENE 15 11029 - 11514 452 161 aa, chain + ## HITS:1 COG:CAC0309_2 KEGG:ns NR:ns ## COG: CAC0309_2 COG0791 # Protein_GI_number: 15893601 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Clostridium acetobutylicum # 29 161 46 171 171 95 43.0 3e-20 MSFKRSLVKFATVLSVFFTGISFINVPLQTQTIQAASQSKTEKRNAVVQLAKEQVGKSYV YGATGPSAFDCSGLAQYVYKKAAKKTLPRTTYGQVTKGKRVSLSHLKKGDLLFWGSASAP YHVGIYVGDGQYVHAATPSQGVRKQAISAYFYPSAAKRVLN >gi|256541388|gb|ACPV01000086.1| GENE 16 11560 - 12246 984 228 aa, chain - ## HITS:1 COG:SPy1034 KEGG:ns NR:ns ## COG: SPy1034 COG3442 # Protein_GI_number: 15675031 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 6 205 18 218 263 176 46.0 2e-44 MSDKLIKIAYLYEDLMNTYGDSGDVKILSFLLKREGYDTQVDNISLGDDFNAFDYDFVFF GGGQDFEQTVVAKDLPRHKETLDKYINDDKPMLCICGGYQLMGSYYKTNSGVTIPGLDIL PLHTVFKSDKRMIGDTRYMTEWGEVKAFENHSGQTYFDNKDKLHPLGDMIEGYGNNPQDH VEGLRYRNFIGSYSHGPLLKNTNVANAIMKMIIAWHQERVSEAEKVTE >gi|256541388|gb|ACPV01000086.1| GENE 17 12615 - 13025 526 136 aa, chain - ## HITS:1 COG:SPy0550 KEGG:ns NR:ns ## COG: SPy0550 COG3077 # Protein_GI_number: 15674648 # Func_class: L Replication, recombination and repair # Function: DNA-damage-inducible protein J # Organism: Streptococcus pyogenes M1 GAS # 1 51 10 60 104 59 52.0 1e-09 MTEKAAINIRVNKETKQNAEKVLNKLGIPMSVAIDMYLRQIALTDGIPFDLYSKKRKKKN DHETAMMVAEATAQYEIVKSNWEDKLAEFIPDWMNMNKMTKEELEARLAKHAQDARDGKS VEISKTFSDLNKELGI >gi|256541388|gb|ACPV01000086.1| GENE 18 13219 - 13657 184 146 aa, chain + ## HITS:1 COG:no KEGG:lhv_1140 NR:ns ## KEGG: lhv_1140 # Name: not_defined # Def: ABC transporter ATPase component # Organism: L.helveticus # Pathway: not_defined # 1 134 1 134 537 159 64.0 3e-38 MHTIFSKIDKKYKIEYWLLLGMNIISTGILTFNVYLEGILLNSLVYKADRAAFVRSIVLI TTLSLIRLLLSYFMNKIQILRFREINMEVNDVIMKELYVKDTLAVTKMNSVQTADRITED TTEVLTFLFQTINQIISIALSSILIF Prediction of potential genes in microbial genomes Time: Wed May 25 05:40:21 2011 Seq name: gi|256541387|gb|ACPV01000087.1| Lactobacillus crispatus 125-2-CHN cont1.87, whole genome shotgun sequence Length of sequence - 5310 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 5, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1168 569 ## COG3839 ABC-type sugar transport systems, ATPase components + Term 1308 - 1346 4.1 + Prom 1183 - 1242 5.4 2 2 Tu 1 . + CDS 1410 - 2636 405 ## COG0477 Permeases of the major facilitator superfamily + Term 2862 - 2908 2.2 + Prom 2732 - 2791 6.7 3 3 Tu 1 . + CDS 2915 - 3958 534 ## COG4823 Abortive infection bacteriophage resistance protein + Term 4033 - 4082 4.1 + Prom 4084 - 4143 4.1 4 4 Tu 1 . + CDS 4175 - 4495 126 ## gi|227878494|ref|ZP_03996431.1| hypothetical protein HMPREF0506_1432 + Term 4522 - 4552 2.1 + Prom 4523 - 4582 7.1 5 5 Tu 1 . + CDS 4603 - 5308 258 ## LCRIS_01911 transcriptional regulator, XRE family Predicted protein(s) >gi|256541387|gb|ACPV01000087.1| GENE 1 2 - 1168 569 388 aa, chain + ## HITS:1 COG:SMb21216 KEGG:ns NR:ns ## COG: SMb21216 COG3839 # Protein_GI_number: 16264468 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Sinorhizobium meliloti # 212 375 31 193 360 74 32.0 3e-13 TYLFMAGSGFLLLIAILLPAYSLIYLFLRPKIFEVSLKLKEAYNKYFSGFTEWLSRYIEV KGNRREKIETERWSNTKRTLLGVAKRDFLLNLNMSNSEIVLQLIFQLVLFINGGLSVISG KMTIGSFSIIFQYFNQLLGQVDEIFSILFKFESFKVAWMRINNILTMKNEQDGRKIISKI NLIQVHDFNIYLDEKTPLFTQNFSANFVTPGFYIVRGRNGIGKSTLLRTIIGLYTPKKEG KITINGIDADLINKRKLRESNISCLFQDIPLPNCSVRDYLGSYSDKSQVYKSEYFAKVFD SPQFRIEKILDREMSELSTGEIQLVKLYSAVLKTGAQCFLLDEPLANIYPELQSDLLKLL QEIAQVNLVIIISHDLKLNENTKNIRIE >gi|256541387|gb|ACPV01000087.1| GENE 2 1410 - 2636 405 408 aa, chain + ## HITS:1 COG:SP0168 KEGG:ns NR:ns ## COG: SP0168 COG0477 # Protein_GI_number: 15900106 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 23 378 15 358 392 103 26.0 5e-22 MFNLIEKENVNVRRLLAGRVLTNIADSLFYMAILWFFKVRFHSPLILSLIFVADSSIEML SFVFGPLIDRVYIKKMLTLVTLMRIVTSVIATLLFQVKLWRDLVIWLLLGVYVISTIGST LIYPAEEKILPVIVSKAKLTKVNGVFQMTYKTLDLFLNAAATLLITWMSFDSTVIISAVF FASALTFYTRLILPRKLLLPNKSNEYFTENYGQDLFKGWQTLKQEGKIARLIMPFAVTNL FYGISSVGLPYFATEHLTKSAISYGGLELASSIGGLVGSVLVQRLTFDKSKIERLVVICL TLSGLAIVLEPAVPQGMPFLLLILFFTSELWIVMMNINFEVLVQESFSPHILGRVETINE SILSSMIPIGSFLGGLIVAHFGADWAIALEGIAQILTAGYYFVIGKKK >gi|256541387|gb|ACPV01000087.1| GENE 3 2915 - 3958 534 347 aa, chain + ## HITS:1 COG:FN1184 KEGG:ns NR:ns ## COG: FN1184 COG4823 # Protein_GI_number: 19704519 # Func_class: V Defense mechanisms # Function: Abortive infection bacteriophage resistance protein # Organism: Fusobacterium nucleatum # 2 329 5 299 299 117 27.0 4e-26 MEHHLSYVDQVLLFKKKGITGIDQNSIKFEKQVNTLKIIGYYKLKQYSYAFWDHDNNQYM GISFDELVKRYYRDQRLKQEIFQAIGDIETALNNEISYILGKTDPYLYLDFEKWCQNSGR NKYLGTVKRRGRIMGVKIDKYKIKNEELAFLSQLQHQVKKSNYIDVQKFERTDRTRIFPT VWLMVNTLSFGQSIYLAKLMLPDNRKEISQKLFHLDIKSLIQSLELLNLIRNICCHNGDL VDISLKTMPKVATKYRKYLNMDNGNYPHRLAIVIISLLDLMYSLNKKYDFKYLKRTLNSL CKDTGRTQNYLAKRMGFKDKNSINALIESYKDKRAITFYPDGSYIYR >gi|256541387|gb|ACPV01000087.1| GENE 4 4175 - 4495 126 106 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878494|ref|ZP_03996431.1| ## NR: gi|227878494|ref|ZP_03996431.1| hypothetical protein HMPREF0506_1432 [Lactobacillus crispatus JV-V01] # 1 106 1 106 106 192 100.0 4e-48 MINFVAVFLHKKDGHSTALLIFELPASSPRTSRAYFLVLTVLYHDKIKMHVTKGSAFTLR AEGGVFSVKWCIFLVLVVIPIDRGSIKRFKKALKKRLKHMLDQLLR >gi|256541387|gb|ACPV01000087.1| GENE 5 4603 - 5308 258 235 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01911 NR:ns ## KEGG: LCRIS_01911 # Name: not_defined # Def: transcriptional regulator, XRE family # Organism: L.crispatus # Pathway: not_defined # 1 235 1 235 277 406 91.0 1e-112 MKIGEALRKKRLKLGLTQEQMCEGILSRPFYAKVESDKNRINAESLFQILLEHQIDLVEF CDLIQDDYTLEERKVEKQFETKMNQAVSAKDTEALDKYCQQIMNSSNNEILKLRALITLT YFKGKTDKIDVEIRKKIKAEFDEGNNWLERPDLLRLLVNTMPMWPQDELDFLIGRLLDFA NKSELSELTTERYLRLLENYLVVCYDRKVHKQLTHFDHIDDVMEYIINATGSFHL Prediction of potential genes in microbial genomes Time: Wed May 25 05:40:31 2011 Seq name: gi|256541386|gb|ACPV01000088.1| Lactobacillus crispatus 125-2-CHN cont1.88, whole genome shotgun sequence Length of sequence - 1708 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 82 - 141 3.4 1 1 Tu 1 . + CDS 228 - 461 88 ## LCRIS_01910 putative protein without homology - Term 802 - 842 10.6 2 2 Tu 1 . - CDS 849 - 1664 1077 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Predicted protein(s) >gi|256541386|gb|ACPV01000088.1| GENE 1 228 - 461 88 77 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01910 NR:ns ## KEGG: LCRIS_01910 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 77 1 77 77 68 93.0 7e-11 MQVDVASIVTAVVILIAVVIIIIKKESKISGMTIIAVGVVFLIDSCVLRYKPVMQLVVLS ILFIMLGIFWIIKSYKK >gi|256541386|gb|ACPV01000088.1| GENE 2 849 - 1664 1077 271 aa, chain - ## HITS:1 COG:PM1261 KEGG:ns NR:ns ## COG: PM1261 COG0351 # Protein_GI_number: 15603126 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Pasteurella multocida # 4 271 3 270 273 223 44.0 3e-58 MEKNQKIAVTIAGNDSDGSAGMPADLHSFYARGVYGMGLMTAAVAGNTKGIFAQQIMPLD FIQKQFDVLNDDFKINATKTGMLANKEIIDCVADNLEKYDMGKIVLDPVIITKHGATLLD DDAYQTFLDRLLPLADVITPNFYEQQKLTGLKLNNKEEIHAGAKKLQEMGAKNVLMKGRH DSDNQTEVTDILLTEDGAFHEFTKPFFKTDRVNGTGDTLSAVIAAELAKGKSVIDAIKIG KDFTYAAISHPIDVGSKWGPINHLAAQEENR Prediction of potential genes in microbial genomes Time: Wed May 25 05:40:44 2011 Seq name: gi|256541385|gb|ACPV01000089.1| Lactobacillus crispatus 125-2-CHN cont1.89, whole genome shotgun sequence Length of sequence - 36332 bp Number of predicted genes - 34, with homology - 32 Number of transcription units - 16, operones - 6 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 3 - 62 1.7 1 1 Op 1 . + CDS 87 - 1586 1543 ## COG0554 Glycerol kinase 2 1 Op 2 . + CDS 1642 - 2415 825 ## COG2365 Protein tyrosine/serine phosphatase 3 1 Op 3 1/0.000 + CDS 2423 - 3373 934 ## COG1609 Transcriptional regulators + Term 3388 - 3427 3.0 + Prom 3412 - 3471 7.8 4 2 Op 1 . + CDS 3502 - 4677 1215 ## COG0282 Acetate kinase 5 2 Op 2 . + CDS 4678 - 5106 374 ## COG2461 Uncharacterized conserved protein + Term 5112 - 5151 6.1 + Prom 5134 - 5193 3.9 6 3 Op 1 7/0.000 + CDS 5219 - 6880 1339 ## COG0366 Glycosidases 7 3 Op 2 3/0.000 + CDS 6884 - 8605 1523 ## COG0366 Glycosidases + Term 8631 - 8668 1.0 + Prom 8649 - 8708 6.1 8 3 Op 3 11/0.000 + CDS 8777 - 11041 2514 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) 9 3 Op 4 3/0.000 + CDS 11034 - 11696 899 ## COG0637 Predicted phosphatase/phosphohexomutase 10 3 Op 5 1/0.000 + CDS 11718 - 12824 1340 ## COG3839 ABC-type sugar transport systems, ATPase components + Prom 12842 - 12901 3.9 11 3 Op 6 19/0.000 + CDS 12940 - 14166 1840 ## COG2182 Maltose-binding periplasmic proteins/domains + Term 14188 - 14228 1.0 12 3 Op 7 20/0.000 + CDS 14241 - 15599 1410 ## COG1175 ABC-type sugar transport systems, permease components 13 3 Op 8 . + CDS 15602 - 16459 958 ## COG3833 ABC-type maltose transport systems, permease component + Term 16471 - 16528 10.2 - Term 16514 - 16547 0.0 14 4 Tu 1 . - CDS 16607 - 17446 424 ## LCRIS_00472 ranscriptional activator Rgg/GadR/MutR-family - Prom 17489 - 17548 9.5 + Prom 17052 - 17111 5.8 15 5 Op 1 . + CDS 17328 - 17600 90 ## 16 5 Op 2 . + CDS 17638 - 18015 345 ## gi|256843965|ref|ZP_05549452.1| predicted protein + Prom 18213 - 18272 4.9 17 6 Tu 1 . + CDS 18429 - 18878 462 ## FI9785_469 hypothetical protein + Term 18889 - 18935 9.8 - Term 18882 - 18918 0.4 18 7 Op 1 . - CDS 19060 - 19416 249 ## LBUL_1063 hypothetical protein 19 7 Op 2 . - CDS 19421 - 19750 95 ## - Prom 19931 - 19990 5.9 + Prom 19795 - 19854 6.2 20 8 Tu 1 . + CDS 19896 - 20426 662 ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 + Term 20438 - 20501 14.1 - Term 20426 - 20487 14.5 21 9 Tu 1 . - CDS 20524 - 21771 1146 ## COG0477 Permeases of the major facilitator superfamily - Prom 21793 - 21852 6.8 22 10 Tu 1 . + CDS 21923 - 22906 712 ## LCRIS_01884 D-ala, D-ala ligase + Term 22915 - 22953 6.2 - Term 22898 - 22946 8.0 23 11 Tu 1 . - CDS 22978 - 23340 531 ## LCRIS_01883 aggregation promoting protein - Prom 23545 - 23604 6.0 + Prom 23313 - 23372 6.0 24 12 Tu 1 . + CDS 23555 - 26092 3386 ## COG0308 Aminopeptidase N + Term 26181 - 26221 7.6 - Term 26290 - 26330 -0.8 25 13 Tu 1 . - CDS 26339 - 27235 558 ## COG0671 Membrane-associated phospholipid phosphatase + Prom 27784 - 27843 6.5 26 14 Tu 1 . + CDS 28013 - 28426 229 ## gi|262046132|ref|ZP_06019095.1| integrase + Prom 28455 - 28514 6.9 27 15 Op 1 39/0.000 + CDS 28601 - 29488 824 ## COG0226 ABC-type phosphate transport system, periplasmic component 28 15 Op 2 38/0.000 + CDS 29508 - 30416 755 ## COG0573 ABC-type phosphate transport system, permease component 29 15 Op 3 41/0.000 + CDS 30419 - 31294 503 ## COG0581 ABC-type phosphate transport system, permease component 30 15 Op 4 32/0.000 + CDS 31297 - 32052 204 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 31 15 Op 5 7/0.000 + CDS 32071 - 32709 432 ## COG0704 Phosphate uptake regulator 32 15 Op 6 40/0.000 + CDS 32786 - 33463 357 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 33 15 Op 7 . + CDS 33727 - 35121 408 ## COG0642 Signal transduction histidine kinase + Term 35211 - 35265 1.1 + Prom 35417 - 35476 7.6 34 16 Tu 1 . + CDS 35521 - 36331 625 ## COG0208 Ribonucleotide reductase, beta subunit Predicted protein(s) >gi|256541385|gb|ACPV01000089.1| GENE 1 87 - 1586 1543 499 aa, chain + ## HITS:1 COG:SPy1684 KEGG:ns NR:ns ## COG: SPy1684 COG0554 # Protein_GI_number: 15675545 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 3 499 4 500 508 734 71.0 0 MTEKYILAIDEGTTSTRAIIFDHDGREVASAQKEFHQYFPEPGWVEHDANKIWMAVQTTI ANAFINSGIWPNQIAAIGITNQRETTVVWDKDTGEPIYHAIVWQSRQTTELAEKLKKEGY SDEIRQKTGLIIDPYFSATKIRWILDHVPGAQEKAEQGKLLFGTIDSWLVWKLTDGAKHV TDYTNASRTMLFNIHTLKWDDDILHLLNIPKKMLPEVRSNSEIYGETASYMFFGGQVPIA GMAGDQQAALFGQLALKPGMVKNTYGTGAFIVMNTGDKPTDSNNNLLTTIGYGINGKITY ALEGSIFVAGSAIQWLRDSMKLIKHAPDSEQAALESTSENEVYVVPAFTGLGAPYWDAET RGSIFGVTRGTTDKDIIKATLQSLAYQTRDVVDTMQQDSGIEIPALRVDGGASNNNYLMQ FQADILGIEIERAKTLETTSMGAAFLAGLAVGYWKNIDELKHTFTIGQAFEPKMSAVERE KLYSGWQRAIRAARLFAHD >gi|256541385|gb|ACPV01000089.1| GENE 2 1642 - 2415 825 257 aa, chain + ## HITS:1 COG:lin2049 KEGG:ns NR:ns ## COG: lin2049 COG2365 # Protein_GI_number: 16801115 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 4 257 75 326 326 101 30.0 1e-21 MKHDRILALDGPLNFRDIGGYQNDKGQHVKWNKIYRSDSLSSLSKEDQEKLVERRITVDV DLRSKYEQNSAPDKLWSNVRFVDAHIYSENRKQNKGDNKLYRFVHHIPDMGDNWLGQIYQ QVLLNSHSQHEFAKIFAELIELPEEDALVYHCSAGKDRTGMTSALILTALGVDDDTISRD YLLTNELYDFALAKQFPDDNEIASLVSKMNITKGEGPAIRGITETIRQGWGSFDGFFKKE LGFSQKDLNRFRKMYLE >gi|256541385|gb|ACPV01000089.1| GENE 3 2423 - 3373 934 316 aa, chain + ## HITS:1 COG:BS_yvdE KEGG:ns NR:ns ## COG: BS_yvdE COG1609 # Protein_GI_number: 16080516 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 315 1 315 316 323 51.0 2e-88 MTTLSDVAKEANVSKMTVSRVINHPEQVTPELRAMVEKAMEKLNYHPNSIAQALVNNRTN VVKFVTLEDIDTTEPYYMNLLFGFARGLNTKQYAMQLVTDPNQIEKENADGYLITGARNK DYELFDKLDKPFVLFGENHRGYDFVDSDNQLAEKMATQYALDRLYKHIVFIGIDLKEPFE YSREAGYINTLQQHQLIPQIFRVSNHSHAAQDVIHEHFKEFKKDTCFVCASDRIAVGVVR QLQDEGARIPKDFGVIGFDGVFLDQVSNPKLTTIKQPIFEMGEMLAKMLLQKIAQSGSPQ GEVMLKPKLIRRQSTR >gi|256541385|gb|ACPV01000089.1| GENE 4 3502 - 4677 1215 391 aa, chain + ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 1 391 1 395 395 421 51.0 1e-117 MKKVLAINSGSSSFKYKLFLFPDEKVIASGMADRVGMDNAVFKIKLNGKEYIKNTSIPDQ EAAVSLLIENLKKFHVLKSLDELAGVGHRVVNGGKVFRESALIDEKKLQQIFDLGELAPL HNVPEAMGIKAFMKIIPDVPQVAVFDTSYHTSLDQVNYLYPIPYKYYEKYGIRKYGAHGI SVSYVAPRTARLMGRNLYTLKLIVCHLGSGASVTAVKNGKSLDTSMGFSPLTGVAMGTRS GDFDPSALEYIMQKTSMTVEEAVDMLNHKSGMLGVSGVSSDMRDLLASKKKHARLARKIF VNRVVRYVGAYAAEMDGIDGIVFTAGIGEHDPGVRAGVMSALHYLGLEPDYKANRTDGEK FISKPDSKVKALIVPTNEELMIAREVIRLAK >gi|256541385|gb|ACPV01000089.1| GENE 5 4678 - 5106 374 142 aa, chain + ## HITS:1 COG:CAC1531 KEGG:ns NR:ns ## COG: CAC1531 COG2461 # Protein_GI_number: 15894809 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 5 126 275 396 405 69 31.0 2e-12 MTDKIELIGGSLSVEQLNAIFETIPQEMDVLDENDVVVWSSMNKHRLFKRTEKDIGKTVF EVHPGHSQGHVKAVLKQMHEGKRGKFSIMIHKDGIPVNIAFYSLHNDQGKYLGCIEVTQP VADLQEKGSKWRNVWNMIFKKK >gi|256541385|gb|ACPV01000089.1| GENE 6 5219 - 6880 1339 553 aa, chain + ## HITS:1 COG:BH2903 KEGG:ns NR:ns ## COG: BH2903 COG0366 # Protein_GI_number: 15615466 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 3 520 4 521 561 360 37.0 5e-99 MAHWYDHAIIYQIYPKSFQDSNGDGVGDLNGIRKRIPYLKNLGVNAVWLNPVFVSPQVDN GYDVSNYFAIDPHMGTMEDMENLIKDLHKAGIHLIMDFVLNHTSDQHPWFQDAIKNPDSL YRDYYIFAGHDGKRPNNWGSFFGGSVWEPDPAGTGQSYFHLFDKRMPDLNWKNPEVRHAM LEVAEYWLKKGIDGLRLDAFIHIGKADLRQNYPTGDGDVNKPIVAEPFFANLPQVQEWMR PFCEQIKQDYPDTLLLGEAASASVNLAVDYTTKHNHLMDSVITFRYFTDDDSNCDQRFSK QYQPKKLDLTAFKQNQVVWQQTLAGVSQPTLYWNNHDMARLATRVARTQTQAKSLAMLMY LQRGIPVIYYGEELGLKNLHFTSADQFEDQTVAPWLKDAEKVLSKDAALAMVSETHKLPA RGPMPWDATENHGFSEVKPWITGIKQDDACVANEINDTTSMFNFYKELLELKKEALFQIG TYYMISTDKNSYVYQRDLHDESAIVAVSLSDQKTTVEIPAGYTVATLKAGEYQLTNEKLT LMPYAGVVLKKEN >gi|256541385|gb|ACPV01000089.1| GENE 7 6884 - 8605 1523 573 aa, chain + ## HITS:1 COG:L128694 KEGG:ns NR:ns ## COG: L128694 COG0366 # Protein_GI_number: 15673664 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 1 570 1 582 584 550 48.0 1e-156 MQLAALRHRTESEDSFVVDPSHVRVRFHSAKNDVKKVIVHYCDNYLPLEQAKTCEMEKIG VGQCEDHWGITLEAPYHRLKYTFEVIGSDGTSVVVGDRAISSDVDKAIMEDGSYFKVPYC HEIDMVKTPEWVKHTVWYQIFPERFANGDKSNDPQGVKAWNPEDHPGREDFYGGDLQGVL DHLDYLKKLGVNGLYFCPIFKASSNHKYDTIDYLQVDPAFGDKDLFAKVVNEAHARGMKV MLDAVFNHLGDQSMQWQDVVKNGPSSRFASWFHINEYPVEPYRDPLKGEGSSKFDTFAFE KHMPKLNTANPEVQDFLLEIATYWVKYFDIDAWRLDVANEVDHHFWKKFHKAVTDIKSDF YIVGEVWHSARPWLNGDEFTGVMNYPYTLQIEDHFFKHKLSAQELTSRLTDQLMKYRDAT NAAMMNMLDSHDTARILTVANGDQDLALQALAFEFMQKGSPCIYYGTEMGMTGGNDPDCR KPMDWAKEDGPVWQRVHQLIDFRLQHDETFGKGRIKLHVTENGLIEVDREGNESIKAYFN TTDHPVEINCENTFSQDYENNQLAPKGFVVSVH >gi|256541385|gb|ACPV01000089.1| GENE 8 8777 - 11041 2514 754 aa, chain + ## HITS:1 COG:NMB0390 KEGG:ns NR:ns ## COG: NMB0390 COG1554 # Protein_GI_number: 15676304 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Neisseria meningitidis MC58 # 3 751 4 747 752 841 58.0 0 MKRIFEIDPWKVVTHKFEPKDKRLQESMTAIGNDYMGMRGNFEEGYSGDSLQGTYLAGVW FPDKTRVGWWKNGYPKYFGKVPNSPSFINMGITINGEKLDLAKVKFSDFYLALDMHQGLL TRSFTYEGKDTKVKFEFERFLHITLKEAALIKVKATVLSGKAKIDFDAALDGTVVNEDSN YDAKFWMPLGENAEARTIKVETKANPYKVPQFTVLLKQSLRHNGEVVKGDVSTEAAQLHE KLSVELNEGESYDLEKDVIVVTSRDVKPDDQDAKATELMTKLQAKSFEENLADHEAVWQK RWDKSDVVIAGDDAAQQGIRFNICQLFMTYYGEDERLNVGPKGFTGEKYGGATYWDTEAY IVPMYLCVTDPSVTRALLQYRHDQLPGAYHNAKEQGLPGALFPMVTFNGIECHNEWEITF EEIHRNADIPHAIAMYTDYTGDDSYVKNEGMDVLVGTARFWAARVHWSKWRNKYVMHGVT GPNEYENNVNNNWFTNTMARWLLKYTLERLPLATKEAQERVRVTDEEKAKWQDIVDNMYL PEDKERGIFLQQDDFLDKDIRPVSEIEDQRPINQHWSWDKILRSPFIKQADVLQGIYFLN DEYTMEQKEKNFDFYEPLTVHESSLSPCIHSILAAELGKQKKAVELYQRTARLDLDNYNN DTVDGLHITSMSGSWLTIVQGFAGMRYDHNQLKFNPFVPEGWDHYSFKINYRGRLIEVYV DHEGTKLTLLKGEDIDVLVHDKKVTLKEGETTNA >gi|256541385|gb|ACPV01000089.1| GENE 9 11034 - 11696 899 220 aa, chain + ## HITS:1 COG:BS_yvdM KEGG:ns NR:ns ## COG: BS_yvdM COG0637 # Protein_GI_number: 16080508 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Bacillus subtilis # 2 210 1 209 226 186 44.0 2e-47 MLKGLLFDLDGVLTNSAKFHLTAWNNLAKELGITLTDAQLDSLRGISRMDSLNLILKYGG QEDKYTEAEKEKFAAEKNAKFVEQVETMTPKDILPGIPELLADAKKQNLKMVIASASKNA PKILTRLGIMDEFDGIVDPATLHHGKPDPEIYIKAQEIAGLKADEVISFEDAKAGVEAIK AAGQFAVGIGDKELLKEADYIVPTTAELKLSEIEKVFNEK >gi|256541385|gb|ACPV01000089.1| GENE 10 11718 - 12824 1340 368 aa, chain + ## HITS:1 COG:SPy1976 KEGG:ns NR:ns ## COG: SPy1976 COG3839 # Protein_GI_number: 15675768 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 1 366 1 376 377 496 64.0 1e-140 MVEVDLNHIYKKYAGNDRYSVNDFDLHIKDKEFIVFVGPSGCGKSTTLRMVAGLEDISKG TLEIDHKVMNDVAPKDRHIAMVFQNYALYPHMTIYDNMAFGLKLRHTPKDEIDQKVKKAA KMLGLEEYLDKKPGALSGGQRQRVALGRAIVRAAPIFLMDEPLSNLDAKLRVVMRTEIAK LHQDLGTTTIYVTHDQTEAMTLADRVVVMSVGRVEQIGSPLEVYNKPVNMFVAGFIGSPQ MNFFNVHYKDGRISDGKGLNIGIPEGKAKLLEEKGYNDKDLVFGIRPEDIHSEEAFMETW PDSVIESNVVVSELLGATIQIHQEVDGTEFTAIVNSRDYHKPGDKVKMGFDVNKAHFFDK DSTKAIVN >gi|256541385|gb|ACPV01000089.1| GENE 11 12940 - 14166 1840 408 aa, chain + ## HITS:1 COG:L128695 KEGG:ns NR:ns ## COG: L128695 COG2182 # Protein_GI_number: 15673665 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Lactococcus lactis # 1 407 1 407 410 332 50.0 6e-91 MKIWKKMALGSTAVLAALSLAACSNGSSNSSSSSSNSNKKANLTLWVDTEQVPYYKQIAK DFTKKNKNIKVRVVQSPNGSANAKTDVGKDPSKAADVFEVPNDQLGQMAEAGYINPLSPS ATKDIQDNYVDVASKGVTWKGKVYAFPYAQQAQTIYYNKSKLSANDVKDWKTLTSKGIVA TDFTNAYVMWPVMFSAGTTLYGKNGEDLKGSTFNSQNGVNALKWYAAQKKNKGVMQTSNA LNQLKKGNAQAILDGPWNAANIKKILGKNFAVAKYPKIEVGGKSVQMEAFLGIEGFAVNA NTKNAKAASDLAAYITNKKSQLIAHKNAGQIPVLKSAVNSSAVKSDPVAEAVIEMAKPGN SVLQPKLPQMAAFWNGAAPLISGTYDGKIKPAQYKPQLAKLAKNIEKK >gi|256541385|gb|ACPV01000089.1| GENE 12 14241 - 15599 1410 452 aa, chain + ## HITS:1 COG:L128696 KEGG:ns NR:ns ## COG: L128696 COG1175 # Protein_GI_number: 15673666 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Lactococcus lactis # 1 452 1 452 452 534 63.0 1e-151 MFLKKKHVAPKATYREVWSKGDIATKLSFFLMGSNALANKQWVKGISLLLSEIIFIVWFI LSGIPTLNSLATLGTIKTKKVVYDAAQGVYVTKQPSNSVLILLFGVLALILCVAIIYLYI VNLRSTRHNYILKRDGDHIPTNVEELKSLLDTRLHATLMVIPLLGILFFTILPTIFMISM AFTNYDRQHPIAFSWTGFQAFGNVLSGDLAGTFFPVLGWTLIWAVAATATTFFFGVLLAL LIESKGIKHKGFWRTIFVIIWAVPQFVSLLMMAQFLDYQGALNNILMNLHWISSPIHFID NQASPLVARITVILVNMWIGIPVSMLVSTAIIQNLPQDQIEAAKIDGANAAQIFRSITFP QILFVMAPSLIQQFIGNINNFNVIFLLTGGAPMNSKYNGAGSTDLLVTWLYNLTFGQEQR YNASAVLGILIFIISATVSLIAYRRTNAFKEG >gi|256541385|gb|ACPV01000089.1| GENE 13 15602 - 16459 958 285 aa, chain + ## HITS:1 COG:L128697 KEGG:ns NR:ns ## COG: L128697 COG3833 # Protein_GI_number: 15673667 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type maltose transport systems, permease component # Organism: Lactococcus lactis # 1 285 1 285 285 333 63.0 2e-91 MKSYSNQRRLSLIFRYILLIVLAILWILPIVWIVLASFSFNDTGFVSTFWPEKFTLQNYI GIFTNPQYPFGNWIINTLVISLLSMVISTFLTISVAYVLSRLRFAFRKPFLQIALVLGMF PGFMSMIALYYILKGLNMLNLFGLLLVYVGGAGLGFYVAKGFFDTIPRSIDEAAEIDGAT KWQVFLHIGLPLSKPMIVYTALTAFIAPWTDFIFSGIILSTSGNAKTYTVAYGLYNMVHT AKGNATAYFAQFVAGCVIIAIPITILFVFMQKFYVNGITAGADKG >gi|256541385|gb|ACPV01000089.1| GENE 14 16607 - 17446 424 279 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00472 NR:ns ## KEGG: LCRIS_00472 # Name: not_defined # Def: ranscriptional activator Rgg/GadR/MutR-family # Organism: L.crispatus # Pathway: not_defined # 1 278 1 278 284 217 46.0 3e-55 MYGKKFKEIRIKQNISLEQAAKDVVSISTLSRWENDKLDINFSQLNHLLANIHLTLREFA RYCEINPSDTFSIKAAKAYNSDDINQLHALAQQQLDKYYSSRDRYDLFLTAIANNYYFDL TQKNIFSQEDINRLNYLFSHVEYWSEFYITVFANTVFLIKPEVQYQICNKILSQLYLQDF SSWDIFIDSIGSILNSLTSLIISNPSLAQKLLEKINKLPIPIQCSYMKIRRNFLDKLLHY RLNKDNENEILNIISSLKTLGLPQIAHNFSTLFTRIKDL >gi|256541385|gb|ACPV01000089.1| GENE 15 17328 - 17600 90 90 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSNLSFSQRDKVEIETTSFAACSNDIFCLILISLNFLPYIKITSMMKRKRNKLTLTIITA FVILGSIDTFEIPKLNVKPGVERMGEKENR >gi|256541385|gb|ACPV01000089.1| GENE 16 17638 - 18015 345 125 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843965|ref|ZP_05549452.1| ## NR: gi|256843965|ref|ZP_05549452.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 125 1 125 125 218 100.0 9e-56 MKSISRKLVSLSLVGLVGTTLLTFSSKVDASTETQSTVSSELRADYYKPKRIWITLGSSC DYGPTHYFEYNGYRGYLSKVMREKVGKSATTLYRGYLYSYDVKNIPAPASARKKVLLKLE QNEEK >gi|256541385|gb|ACPV01000089.1| GENE 17 18429 - 18878 462 149 aa, chain + ## HITS:1 COG:no KEGG:FI9785_469 NR:ns ## KEGG: FI9785_469 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 148 1 148 152 138 52.0 5e-32 MKKKMTLSVIAVVTVLVAVIGGMFFYNNQTTVPKNWVNRTLTVDNTENRLSNWFDLYFTK NHAILVAKNSNNSEQKKTKLNKEILQAYSTKKNNPPQTGVKADLGRVDTTESKNGYTIRT KKVVFIFTKMSDGSYRSQDGTVWQFSPKE >gi|256541385|gb|ACPV01000089.1| GENE 18 19060 - 19416 249 118 aa, chain - ## HITS:1 COG:no KEGG:LBUL_1063 NR:ns ## KEGG: LBUL_1063 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 116 1 115 123 65 32.0 7e-10 MFSKKELKIINTTLIIIYLLSVGPTFIFGFTKSNDFTSTFFLIANIILVCLFIIIAIRIA KINFRLKTQYYLLGFITLISIIELAYPGLTLNERISNYFAIGNIILSLLTTKISKKLV >gi|256541385|gb|ACPV01000089.1| GENE 19 19421 - 19750 95 109 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKILRRSLCIISITLFSFALSILIPSVQASKTVLDDLIIFLYLIGIVILGILLLSNKFDY LSLSLSIILLLATIIAWIRFPMISIIYTFFIAYLIMCLLTIFIAKRIKK >gi|256541385|gb|ACPV01000089.1| GENE 20 19896 - 20426 662 176 aa, chain + ## HITS:1 COG:MA1614 KEGG:ns NR:ns ## COG: MA1614 COG2110 # Protein_GI_number: 20090472 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Methanosarcina acetivorans str.C2A # 11 161 27 178 195 184 59.0 5e-47 MLGISEDMIMKNIKIIKGDITKMKADAIVNAANNSLLGGGGVDGAIHRAAGPRLLEECMA LHGCPTGEARITHGYNLPAKYVIHTVGPVYAGKTSDAHMLASCYYNSLALAKKAGLHSVI FSAISTGVYGYPAEDATKIAVDAIEKWQKENAGYNLVISMCAYDNRMYRIYEKMVA >gi|256541385|gb|ACPV01000089.1| GENE 21 20524 - 21771 1146 415 aa, chain - ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 13 406 4 389 402 311 42.0 2e-84 MNKTKSAKLPAGWHMAFYTLWLGCFITGMGYSMTMPFISLFISDLGNYSKLQINLYSGLA FAMTFIAQAIVSPYWGSLADRKGRKLMCMRASGVMALTITLTGFAPNAIYIIVMRFIQGS FSGYINNATALMASETPHERSGWVMSQMMTAGTAGNLVGPLLGGALSSFFGNMFGGAWGY RIPFFITGVLMFIVFLGTTFLVHEDFTPISREKMKPMGEIMKSLPSVKLIVVMFITTMLV QSSTMSIDPIVSLYVKSMMPHGGDVAFVAGVVAATPGLGTLIAASRIGHKMDEVGPLRVL RIGLVVGAALFVPMALTNSPWVLAGLRFLLGIASAGMLPAAQTVLTLNTPSESFGRIFSY NQSFQAVGAVLGSLMGSTISGFSNYATVFWLTGFTLLINFVLVLIFAWGISYRNR >gi|256541385|gb|ACPV01000089.1| GENE 22 21923 - 22906 712 327 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01884 NR:ns ## KEGG: LCRIS_01884 # Name: not_defined # Def: D-ala, D-ala ligase # Organism: L.crispatus # Pathway: not_defined # 1 327 1 327 327 628 99.0 1e-178 MAHMSRREYRMKKEHGQAGADRSRTDYTKTRATTREEFRSRKISNPQPIINQNVANASRK NYHHVKLNFWNIFSDRPYISVAIIVLALFFAMIKFWWGLVILALIVIAGIFIIGHSHHPD RVLSLEFHLKASRKLSMLRALELGGSVTMFLATYMKQVVSVDFSSAGSTDSFQLVQGILS NNGGVYGQRGSYFLSLLNTLSGGSLWSSYRYATNSAQMMNSSSGRWIIMWILLLMIAPAF CVLAQFFKEPYSRNVALVTSIISTVSFVLTPVLMRKWVVGYAMENQVAREAANNAVHIGT MAYVGMACSILVLVIALYRFIKQDNFE >gi|256541385|gb|ACPV01000089.1| GENE 23 22978 - 23340 531 120 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01883 NR:ns ## KEGG: LCRIS_01883 # Name: not_defined # Def: aggregation promoting protein # Organism: L.crispatus # Pathway: not_defined # 1 120 1 120 120 196 99.0 2e-49 MNKHVKSTLVKILAALALAFACVAVANAFSTNTSTTQTVQAARKLSKAEKAAKRWIAMRE SGGSYTARNGVCYGKYQLNIGYLHGNLSPKNQERVADNYVYGRYGSWVNAKRFWLAHNWY >gi|256541385|gb|ACPV01000089.1| GENE 24 23555 - 26092 3386 845 aa, chain + ## HITS:1 COG:L102360 KEGG:ns NR:ns ## COG: L102360 COG0308 # Protein_GI_number: 15672287 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Lactococcus lactis # 1 842 1 841 846 800 48.0 0 MAVKRFYETFHPEHYDLRINVNRKQKEINGTSTVTGEVIENPVFINQKNMTIDSVKVDGK DVPFDVLEKDEAIKIETGKNGKAIIEVEYSAPLTDTMMGIYPSYYEVDGVKKQIIGTQFE TTFARQAFPCIDEPEAKATFTLALKWDEEDGEVALANMPEVEVDKDGYHHFEETVRMSSY LVAFAFGDLQSKTTHTKDGVLIGVYATKAHKPKELDFALDVAKNAIEFYEEFYQTKYPLP QSLQLALPDFSAGAMENWGLVTYREAYLLLDPDNTSLEMKKLVATVITHELAHQWFGDLV TMKWWDNLWLNESFANMMEYLSVDGLEPDWHIWEMFQTSEAPAALTRDATDGVQPIQMEI NDPADIDSAFDSAIVYAKGSRMLVMVRSLLGDDALRKGLKYYFDHHKFGNATGDDLWDAL STATDLDIGKIMHSWLKQPGYPVVSAYVDSSDGHLKLSQQQFFVGEGKDVGRQWQIPLNA NFKAPKIMSDKEIDLGYYKNLRSEAGHPLRINVGNNSHFIVKYDKTLLDDILAHVDELDP IAKLQLLQDLRLLAEGKQISYAAVVPLLTKFADSKSSVVINALYATAAKLRQFVEPESAQ EKDLKKLYDKLSAGQVARLGWKVKPGESDEDAQIRPYELSASLYAENKDSIKTAHEIFTA NEDNLEAMNADIRPYVLINEVKNFGNAELVDKLIKEYQRTADPSYKVDLRSAVTSTKDLA AIKAIVSDFENADVVKPQDLRGWYRGLLANHYGQQAAWDWIREDWDWLDKTVGGDMEFAT FITVTTGVFHTPERLKEFKEFFEPKVNVPLLSREIKMDIKVIEGKVNLIEDEKDAVNSAV AKAID >gi|256541385|gb|ACPV01000089.1| GENE 25 26339 - 27235 558 298 aa, chain - ## HITS:1 COG:L125873 KEGG:ns NR:ns ## COG: L125873 COG0671 # Protein_GI_number: 15674037 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Lactococcus lactis # 7 297 6 303 307 130 32.0 4e-30 MSEENQKKLFGISAIICIILLTITYFGDLAISNTLINYHSWVGTFCQTFGEFPVYLIFAL CGQITMTYAWKGDCEKLLGAGPLFVGGLALSLWQSKKYVNEFLGYLYSVQTNLKNGKAIA MANSDSVKGGYAGSMIIMVWLLFFVIFTLLVQWWLKNKTTKQLTRYMKIAILASLTVWFA LEVNLTLKDLWGRYRPYELTIGNHEFTNWLTINGVNGHKSFPSGHAMAATLCIVFSWFVS NNKHKIFFIGGIVYGVVIAISRVIVGAHFLSDVTFSFFLTVLIIFIMNGLGKKLIEDF >gi|256541385|gb|ACPV01000089.1| GENE 26 28013 - 28426 229 137 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|262046132|ref|ZP_06019095.1| ## NR: gi|262046132|ref|ZP_06019095.1| integrase [Lactobacillus crispatus MV-3A-US] # 1 137 5 141 141 266 100.0 2e-70 MVEIKPIRKISGELVTSIGSKQLDFQHSNLDDLFDKFVIFIDGSLNTVRTYRTSLKQWFI YMREKGITHPDPDTVRQYREFLKASGKKPTTIQNYIVAVKRFFEWTEEEHLYPNIARYVK GVKSESSIFYKCKKRIN >gi|256541385|gb|ACPV01000089.1| GENE 27 28601 - 29488 824 295 aa, chain + ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 4 273 2 276 302 215 46.0 7e-56 MSRKKTKVAIVALVLLAIVTGCVIDSCVADTKGVSGTVNIAGSSALLPLAQSAAKTFMDK NPDSVINTNGGGSGQGLKQVSDGTIDIGDSDLFAYEKLDKKSASKLVDHQVAITAIAPII NKDAGVKSLTTEQLIKVFTGKVTNWKQVGGNDCQIVLVSRPSSSGTRATFEQYALKKHAS QSNQSLETDDSGTLVQMIQSVSGSIGYVSLSYLTGDPQVGIVSINGVKPTLKNVYNGKYT VWSYEHMYTKGQPKGAAKAFLQQMLSKEYSKKIEAMGYGVASKLLAAAKATHANK >gi|256541385|gb|ACPV01000089.1| GENE 28 29508 - 30416 755 302 aa, chain + ## HITS:1 COG:CAC1706 KEGG:ns NR:ns ## COG: CAC1706 COG0573 # Protein_GI_number: 15894983 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Clostridium acetobutylicum # 13 282 8 277 296 237 49.0 2e-62 MDKVVQKAIAKDKRWRADYIACGLLIVALTLFMGAFLLYQGSQTFLKAHHSVWEFLFTSD WAPLDKTGMFGGKVGAAIYIVGSLETCLLGLFICLPFAIGSAVFMTEISPKIGEKFFRPA TEIYVSIPSVVYGWFGLTKLVPIIRNAFHPKMGGFSVLAASIVLAIMIFPTITTVAADAI KSVPNSYREGAYGLGATRWQVIGKVVLPAAFGGILTGVVLGLARAIGEALAVAMVIGKTR SFATSLLSPTSNLTSEIAADMGNTAQGGEYNLALWSMALLLFVISIVLIILIHKLGNGKK EK >gi|256541385|gb|ACPV01000089.1| GENE 29 30419 - 31294 503 291 aa, chain + ## HITS:1 COG:lin2640 KEGG:ns NR:ns ## COG: lin2640 COG0581 # Protein_GI_number: 16801702 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Listeria innocua # 5 286 4 290 294 223 43.0 2e-58 MSRAKIKDRLMTGIFYAIGWIMLAFLLYLMLTIIFDGLKGFQWDFLGAAGNGIFNQFFNT IYLVFLSLLVSVPIGIGAGVYLAEYAKEGKFLTIFEISIESLSSLPSIVIGLFGYLAFIM WTGMSWNILAGALTISILSIPLITTETNNAIRSLPVEYKEGSLSLGATKSETIRKVLIPA AMPQILTGVIMAAGRGFGEAAALLYTSGQSTYINWQNFWKVISPSSPLNPFRSGETLSLH IWAMRTEGALNPSATQIANFTSAVLVVLALLFTLVTRRISDRMRKRNNGGN >gi|256541385|gb|ACPV01000089.1| GENE 30 31297 - 32052 204 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 209 1 199 311 83 27 2e-15 MEDKITIKKLNLYYSDFHALHDINVHIPKNEVTAFIGPSGCGKSSLLRSLNRMNDLVEGC RIDGSIKLDGTDIYNGDLDVTVLRQRVGMVFQRPNPFPMSVYDNVAYGPRIHGITEKKEL DEIVETSLKQAAIWDDLKDRLKKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP ISTSKIEELALELKKNYTIVIVTHNMQQAVRISDKTGFFLLGDLVEFGETDQLFSMPKDE RTEKYITGRFG >gi|256541385|gb|ACPV01000089.1| GENE 31 32071 - 32709 432 212 aa, chain + ## HITS:1 COG:aq_906 KEGG:ns NR:ns ## COG: aq_906 COG0704 # Protein_GI_number: 15606237 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Aquifex aeolicus # 7 209 5 209 221 104 35.0 1e-22 MRTRFDKELDHLHEAMEEIGQLCKESISESTDALFTGNYHKAEDTINLHHRIHKAERDIE ETCLRLLMEQQPVATDLRIISASLKAVYDLERIGEIGADIAELILKEHLSDANDMLNLKS MSQIATCMVNDAVTALANQNVELAKAVIDRDDQVDYDFGKAKAFLIDNFNKDSNPEYLIN LMMVAKYFEKIGDHAVNIAKWSLFVTTGKTGR >gi|256541385|gb|ACPV01000089.1| GENE 32 32786 - 33463 357 225 aa, chain + ## HITS:1 COG:CAC1700 KEGG:ns NR:ns ## COG: CAC1700 COG0745 # Protein_GI_number: 15894977 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 3 222 5 228 232 170 45.0 2e-42 MTEIWCVEDDESIREIEMYTLEAMNFKVRGFEDGHSFFKVLDNNRPDLVILDLMLPDEDG SEILHRLKYTSATEDLPVIIASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLR RTNRKKEDKIEKDGIKILLKRHEVFENGRQVDLTLKEYGLLKLLITHPGTVFSREEIMDQ IWETGFYVETRTVDVHVRTLRQKLGEAGKYIETLRGVGYRYHEAD >gi|256541385|gb|ACPV01000089.1| GENE 33 33727 - 35121 408 464 aa, chain + ## HITS:1 COG:CAC1701 KEGG:ns NR:ns ## COG: CAC1701 COG0642 # Protein_GI_number: 15894978 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 1 453 94 564 566 222 32.0 9e-58 MGNHARREEVAEAMKKGTGTSERYSTTLSTVTMYYAERLNNGGVIRIAITRNSFWRMLLR LLSPLLLIMLLAVLVSWFLAKPLSQTIVKPLNEMDLDKPLESKAYDEIKPLLTRLDSQNK QIADQMEQLHHREKELKTVTDAMQEGLILIDLDDWILLSNPAVVSLLGLHDTDPLPDDVK EIIDKNSRLAHTEGIVERNGRNIQISASPIISRKILKGTSILVVDVTEEYHEEQVRREFT ANVSHELKTPLQSIMGSAELLENHLVKDEDRDGFYKKIHESSAQLLTLIDDIIRLSHLDE NQRFEEIKLNLKSPVTEVLEALQGSAYRHGIKLETNLSDTMILANFRLVYEIAYNLIDNS IRYNKEKGKTKITVKEHRGQAILQVADTGIGIPQEAQNRIFERFYRVEKSHSRKTGGTGL GLSIVKHAVQQCHGTIRLESELGKGSTFTVIFPALPVGADGTNK >gi|256541385|gb|ACPV01000089.1| GENE 34 35521 - 36331 625 270 aa, chain + ## HITS:1 COG:SPy0425 KEGG:ns NR:ns ## COG: SPy0425 COG0208 # Protein_GI_number: 15674552 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 3 270 5 272 337 429 76.0 1e-120 MSYYDHSQSPVEFAYNDNGKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISS WNQLSDDWQQLITRTFTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARS YGTIFSTLCTSEQIEEAHEWVVNNDTLQARAKAVIPYYTGNDPLKSKVAAAIMPGFLLYG GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD FLDKLIDLEKKYLHELYDDFDLVDDAIHFS Prediction of potential genes in microbial genomes Time: Wed May 25 05:41:24 2011 Seq name: gi|256541384|gb|ACPV01000090.1| Lactobacillus crispatus 125-2-CHN cont1.90, whole genome shotgun sequence Length of sequence - 2076 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 225 - 284 6.7 1 1 Tu 1 . + CDS 317 - 1723 1152 ## COG3666 Transposase and inactivated derivatives + Term 1738 - 1778 1.0 Predicted protein(s) >gi|256541384|gb|ACPV01000090.1| GENE 1 317 - 1723 1152 468 aa, chain + ## HITS:1 COG:BH0682 KEGG:ns NR:ns ## COG: BH0682 COG3666 # Protein_GI_number: 15613245 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 1 468 1 464 522 318 42.0 1e-86 MYQNYITGQTTLSLNLDFSIPANHIASVISEFVDSIPNEVILETTSNTGRPAYHPAMMLK ILLFAYSRRVFSGRKIERMLEENLPMMILADNRKISYHTINNFRSSDHANKVIKQCFVYF TSLLEDEGLIRENAVFIDGTKIEADANRYTFVWRKAIEKYHAKLKEDVSALYEELINKEV VKAMAEEEAQTSQGLEILAQETEKEVEKLTEKIDREPKAIPGGSKNKAKRRELKKIAHKL RKDFIPRAKKYEEAEEIFAGRNSYSKTDHDATFMHMKEDHMKNGQLKPGYNIQAATTNQY IVDFALFPNPADFRIFELFLEQMKSRGIFDKFQNIVADAGYGSEYNYSILEENYSDKNYQ IPYTQYEKEQTRKYKKDPSKVDNWYYNEEEDYYVDKSGVRFNFKYYSQRKDRFTGMVRNF KIYEADEFQLTEELTQLAKTKTGRQRQIHYNPNWQYLKEKAKETLQSE Prediction of potential genes in microbial genomes Time: Wed May 25 05:41:25 2011 Seq name: gi|256541383|gb|ACPV01000091.1| Lactobacillus crispatus 125-2-CHN cont1.91, whole genome shotgun sequence Length of sequence - 1926 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 69 - 128 4.8 1 1 Tu 1 . + CDS 162 - 1655 1552 ## COG3104 Dipeptide/tripeptide permease + Term 1660 - 1695 2.0 Predicted protein(s) >gi|256541383|gb|ACPV01000091.1| GENE 1 162 - 1655 1552 497 aa, chain + ## HITS:1 COG:lin0564 KEGG:ns NR:ns ## COG: lin0564 COG3104 # Protein_GI_number: 16799639 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Listeria innocua # 5 497 4 492 492 462 51.0 1e-130 MGKRDSDTAFFGQPKGLSTLFFTEMWERFSYYGMRAILLFYMYYAVTKGGLGMDQTTAAS IMSIYGSLVYLSTLVGGWLSDRVWGSRKTVFYGGVLIMLGHIVLALPAGVTALYASIALI VVGTGLLKPNVSDMVGGLYSVEDRRRDAGFSIFVFGINLGSFLAPWLVPWAAQGFGFHIF GNEMNFHAGFSLAAIGMFFGLVQYVWGGKKYLSPESLTPNDPIDKGDLLNIIKWVVIGFV VIALVLAAMAGFGQLNVDNVITLLTILAIALPIYYFVMMLRSSKVTKVERSRVKAYIPLF FAAAIFWGIEESGSVVLALFAAQRTVLHIGNWHFTAANFQSLNPLFIMILTPIFVWLWEH WKKQPTAPGKFAAGLVFAGLSYMWMALPGMLYGTASKVSPFWLVGSWFLVEIAEMLISPI GLSITTKLAPNAYRSQMMSMWFMADATGQAVNAQIVKFYSTGTEVQYFMAVGLVSVAFAV IMFFLVKKINVLMEGVH Prediction of potential genes in microbial genomes Time: Wed May 25 05:41:29 2011 Seq name: gi|256541382|gb|ACPV01000092.1| Lactobacillus crispatus 125-2-CHN cont1.92, whole genome shotgun sequence Length of sequence - 11296 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 10, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 12 - 470 234 ## gi|227878543|ref|ZP_03996475.1| hypothetical protein HMPREF0506_1476 + Term 549 - 582 4.0 + Prom 596 - 655 5.7 2 2 Op 1 . + CDS 679 - 1131 422 ## COG3279 Response regulator of the LytR/AlgR family 3 2 Op 2 . + CDS 1131 - 1886 678 ## LCRIS_01878 uncharacterized conserved secreted or membrane protein + Term 1891 - 1920 0.5 4 3 Op 1 . - CDS 1913 - 2104 227 ## LCRIS_01876 hypothetical protein - Prom 2134 - 2193 7.3 - Term 2145 - 2182 2.4 5 3 Op 2 . - CDS 2197 - 3399 1441 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 3443 - 3502 11.1 + Prom 3477 - 3536 7.8 6 4 Tu 1 . + CDS 3556 - 4353 710 ## COG1085 Galactose-1-phosphate uridylyltransferase + Term 4399 - 4454 11.2 - Term 4386 - 4436 5.1 7 5 Tu 1 . - CDS 4437 - 5081 752 ## LCRIS_01873 hypothetical protein - Prom 5104 - 5163 6.3 + Prom 5019 - 5078 5.5 8 6 Tu 1 . + CDS 5140 - 5901 510 ## COG3022 Uncharacterized protein conserved in bacteria - Term 5780 - 5810 -0.9 9 7 Tu 1 . - CDS 5898 - 6653 941 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 6751 - 6810 8.6 + Prom 6634 - 6693 8.0 10 8 Tu 1 . + CDS 6783 - 7382 783 ## COG0406 Fructose-2,6-bisphosphatase + Term 7384 - 7419 -1.0 + Prom 7397 - 7456 9.3 11 9 Op 1 1/0.000 + CDS 7501 - 8025 432 ## COG1309 Transcriptional regulator 12 9 Op 2 36/0.000 + CDS 8028 - 9089 1057 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 13 9 Op 3 . + CDS 9091 - 9765 233 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 9769 - 9809 3.8 - Term 9765 - 9789 -1.0 14 10 Tu 1 . - CDS 9798 - 11210 1634 ## COG4690 Dipeptidase - Prom 11236 - 11295 9.3 Predicted protein(s) >gi|256541382|gb|ACPV01000092.1| GENE 1 12 - 470 234 152 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878543|ref|ZP_03996475.1| ## NR: gi|227878543|ref|ZP_03996475.1| hypothetical protein HMPREF0506_1476 [Lactobacillus crispatus JV-V01] # 1 152 1 152 152 182 100.0 5e-45 MDREKYIKYLAYQLINKLFWIIALLAIVCILTINVMWIHNIFLGLFSIAEVILVYVSQYF IRAIQHNQNINILGYKSNKISSQKYNVTVLNFKVIEFFVVLNIGLWMIIVVMSQHYLKLS SVIIINVSFMALASVFVILSFIVVLIYYSIKY >gi|256541382|gb|ACPV01000092.1| GENE 2 679 - 1131 422 150 aa, chain + ## HITS:1 COG:SP1915 KEGG:ns NR:ns ## COG: SP1915 COG3279 # Protein_GI_number: 15901739 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Streptococcus pneumoniae TIGR4 # 1 148 2 149 149 98 41.0 5e-21 MKIKLEIDPDAAEDELIIKAKSISPEIEQLYKKLQGIEHNDQIECFRNNVSYYLPLNEIL FFETDAKQVILHTQDKAYLVKHKLYELENILGAGFMRISKSTIINLDQIYGLTRSISDCK IQFHDTYKTVYASRRYYKELRTRLDERRSL >gi|256541382|gb|ACPV01000092.1| GENE 3 1131 - 1886 678 251 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01878 NR:ns ## KEGG: LCRIS_01878 # Name: not_defined # Def: uncharacterized conserved secreted or membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 251 1 252 257 354 80.0 2e-96 MKNSFARILWGVGLIAAAALLVISQLGLLSFKISVWTIILTVIFLACLIKGLLDKSIVVS VFSIAFLVITYAGPLGIKKFLSSWMILFIALLVSMGLSLLFKKDPEIVIKKSFHWNDDDD SDDADTETKVTHHHVQDVIEDGDNIVINQKMAGDSSRYIHSQNLQSINLEASFGNANIYL DDAKAAGDTVVLNLTASMGNVNLYVPLSWQIDNQLSISLGNVIVKGKSNGGGPTLVLKGR ANMGNVVINYI >gi|256541382|gb|ACPV01000092.1| GENE 4 1913 - 2104 227 63 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01876 NR:ns ## KEGG: LCRIS_01876 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 63 1 63 63 103 95.0 2e-21 MLVIGIICLVVAAISYFKYLSEKNGQANQKQAENKNEAKWQRTLAIIFLVFGILLIGYWI ALR >gi|256541382|gb|ACPV01000092.1| GENE 5 2197 - 3399 1441 400 aa, chain - ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 76 400 176 465 466 110 29.0 6e-24 MQSRTEMKKRNNRNNLYLIIIGIIVVIAIICGFIIHNQRVAAERSQREYASTHFNPNVTI YGVQVGKLTVNKATAKINKQADNVVFLRNKKIIAEKDDKVQTISQAEVKNIFTKQHTDLP SKQKYVFKSAKIDEAKKSLQKIQNAVVTYKINGQEFKLKADDLIHEVTYKGGKYKFTDVK KLHAKMEAIDQEVKTLKKSYKFTVPTGNKVNGKTITVKNESYGWGIYVKKAVAAVENAFI NGQDVVDGSKYIYGEGYSTYAHGYGKSNHGIGKNYVVVSIKNQELWVVRKGKVAVHLTDV VTGTENKSNATPKGVWYIMYKESPSVLRGYNNDGSKYASKVQYWMPFTLSGCGLHDASWR SDWSKSAYLTGGSHGCVNIRPAEIRSVWNNVLTNDAVIVY >gi|256541382|gb|ACPV01000092.1| GENE 6 3556 - 4353 710 265 aa, chain + ## HITS:1 COG:L51063 KEGG:ns NR:ns ## COG: L51063 COG1085 # Protein_GI_number: 15672818 # Func_class: C Energy production and conversion # Function: Galactose-1-phosphate uridylyltransferase # Organism: Lactococcus lactis # 2 258 5 258 261 229 44.0 4e-60 MTNDPLVFQMSIAKGKPQSYRKDKKKNVCPFCDVENLTDIYAKEDDMIWLKNKFPTLRDT WQTVLIESSDHNGDISTYTQEHNRKLMHFALACFEKMQASDQYESIVWYKNYGPHSGGSL IHPHMQIVGFEHEDGYKYIHPNNFEGETLFEKSGVEVNIAEHPVQGYTELNINLLDKNSI DLWADWIQSGAKYLLNIMYNGRCDSYNLFFYPRNDDGICAKYITRFEAPPYFVGYKLSQV NDEITLDKEARRFREFFDNGSVVKA >gi|256541382|gb|ACPV01000092.1| GENE 7 4437 - 5081 752 214 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01873 NR:ns ## KEGG: LCRIS_01873 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 214 1 214 214 415 99.0 1e-115 MNPDFAIVLNYQLNDKADADFLVKTARNIGARAVMTDRQTEDFKTACAKYTIFLANPENS TDLTKDNVIDTMVNNRKAGKTTIINVPVEAGKFSAATQAMLDTINDWMHQFGHAFNEGKT SALTSSDGFILENRHANYQKYVFLPSPLPDKIVVEGLVEEPNRVEWIEHRTDLDFNYKNQ KLTINLVKPDDEFAWQVLRIQAHRPEDDILETKF >gi|256541382|gb|ACPV01000092.1| GENE 8 5140 - 5901 510 253 aa, chain + ## HITS:1 COG:YPO0462 KEGG:ns NR:ns ## COG: YPO0462 COG3022 # Protein_GI_number: 16120791 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 1 245 1 253 258 148 37.0 8e-36 MKIIIAPAKIMKIDRDSFPIQSKPQFLDKTRILERFLKSRSNEQLKDLWHASENVTKQSI LQLENMNLDERLTPAILAFSGIQYQYMAPDLFTQPALDYIQKNLRILSGFYGMLRPFDGV CPYRLELNTKMVGFRDYSLYYFWGSDIAENLFQEDNIVIDLASKQYTRLVKPYLSQGRQL ITVDFQELKNGKWKTVGVHAKMARGEMVRYIAEKQIKNPTDLQDFNDFEFQFEPDVSTKD HYVFRTEFDFTRR >gi|256541382|gb|ACPV01000092.1| GENE 9 5898 - 6653 941 251 aa, chain - ## HITS:1 COG:CAC3665 KEGG:ns NR:ns ## COG: CAC3665 COG1073 # Protein_GI_number: 15896898 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Clostridium acetobutylicum # 4 247 11 258 265 112 31.0 5e-25 MSRVTIERDGLTLVGDREEPFGEIYDMAILMHGFTANRNTELLRQIADDLRDENVASVRF DFNGHGESDGKFEDMTVPNEIADGKAILEYVRTDPHVRNIFLVGHSQGGVIASMLAGLYP DVIKKVVLLAPAAQLKDDALKGNTQGAVYDPNHIPDTVPLVGNKLGMKLGGFYLRTAQVL PIYEVSARFSGPVSVIYGTNDQVVNPKYAKKYHDIYENSELHAITDADHRFTGQYKKSAS DLTAQFLKPLF >gi|256541382|gb|ACPV01000092.1| GENE 10 6783 - 7382 783 199 aa, chain + ## HITS:1 COG:CAC1385 KEGG:ns NR:ns ## COG: CAC1385 COG0406 # Protein_GI_number: 15894664 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Clostridium acetobutylicum # 1 195 2 190 191 101 35.0 8e-22 MEILFIRHGQTDVNKDNRIQGAQVDADLNEFGREYAKKSAAKFDENKFDVVYSSPMKRAV ETAKIFTKGKKKLNLDKRLLEFDFGDWDGKKMDDIAKEYPDVVDPWGKVTRNYVKYAKNG EGYEEFEARCANFLDEIYQKYPEGKVLVVAHGRLIRMMAAHYLSNGDMDKIDTPNNCALS KFSVRDGIARLYYYNRVLV >gi|256541382|gb|ACPV01000092.1| GENE 11 7501 - 8025 432 174 aa, chain + ## HITS:1 COG:L53789 KEGG:ns NR:ns ## COG: L53789 COG1309 # Protein_GI_number: 15672643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 103 1 109 189 61 37.0 7e-10 MVKQTFKNLPSAKRRRIEAVLLEEFSTYPLADAKVSHIVKNANIARGAFYKYFDDLIDAY VYMYHIAIEDIHARMSPNEKFDPNHFYARVVKFIDKVQYSKYEPMMKLHMSQNEYLIPHN FKIYSRQLLNMGPQLWSAMVLSHEVISLCLSDPENQEKNLARYKKSLDILAKGM >gi|256541382|gb|ACPV01000092.1| GENE 12 8028 - 9089 1057 353 aa, chain + ## HITS:1 COG:L130944 KEGG:ns NR:ns ## COG: L130944 COG0577 # Protein_GI_number: 15674237 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 1 352 2 357 357 232 40.0 7e-61 MFLALKEIKHEKLRYGLIILMIFLISYLIFMLSSLAVGLASQNTQAIENWNAQKIVLNKN ANISMSQSILTKDDLKNAKIGKNEAIIGQLGIVAKKKGKNSISAQFLGIKKDQFIYQDQD IIAGKKAKNGNQITVDSSFKDKGYKLGDQISLNGSKKKYKIVGFVNNAKINIAPIVYGSM KTWKKLRMVAPNVAASAVVSKNSNYKFNYKDAKTYPIQAFINKLPGYTAQNLTFELMIGF LFVISLIVIAVFLYILTMQKMHNFAVMRAQGIPSKTLVGATISQSIILVAIGVVIAIILM WLTDLTLPAAVPMTFTPAIMISGTLGMLVMGIIGSLIPIRSILKVDPAKAIGE >gi|256541382|gb|ACPV01000092.1| GENE 13 9091 - 9765 233 224 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 208 12 227 329 94 31 3e-19 MAVIELKDVNKVYGKGEAKVAALKDINFQANKGEVVLIMGPSGAGKSTFLTIAGSLQKPT SGEILINGRDISNFSAKQSGELRLNKIGFVLQAYNLVPFLTVKEQFTLIDKVKKQNNLSQ DKLQGLLKQLGIEKLVNKYPNELSGGQQQRVAIATALYANPDILLADEPTASLDTQNVEE VGQLFKDLAKKRDKAVILVTHDPRLEKYADHIYEMMDGLMTKKK >gi|256541382|gb|ACPV01000092.1| GENE 14 9798 - 11210 1634 470 aa, chain - ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 7 467 8 473 474 302 36.0 1e-81 MKVSAWRSSCTSILIGKKASLSGSIIIGRNEDAKTAWPKHLAFNPHRDNVQKNHFKSKDN KFEMDLPTASYSYSSTPEWTDKYGVFEEDGINEYHVAMSATESAYANDRVLAVDPFDTDK GILEEAMVTVVLPYVKSAREGVQRLGEIVEKYGAAEADGILFGDRDEAWYMEIGSGHHWV AQRIPDDSYAVVANQLAIQEIDFASDDFMYSQDLQKFVYDNKLWPKNQPFIWRDIFGTHY DSDLHYNTPRVWSGQRLLTPSVAQEPESFNLPFIRKPDAPISAQDAQRVLSDHYNNTAYD LTNQKNRNNATFRPISVATTQESHLLELNGENMIHWLAMGVAAQSVYVPFYPQGTKVPNT WKNGKETYSPNSAYWVFKLASVLVDRNWGKYGTALSNTQSTTNEKLLQIRQQYDQKLAQE KDQEQQIKLVDEANAKLAKTATDAYKELIAKLITEQTGDSPLRFQMDPNL Prediction of potential genes in microbial genomes Time: Wed May 25 05:41:59 2011 Seq name: gi|256541381|gb|ACPV01000093.1| Lactobacillus crispatus 125-2-CHN cont1.93, whole genome shotgun sequence Length of sequence - 45350 bp Number of predicted genes - 51, with homology - 51 Number of transcription units - 22, operones - 14 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 32 - 274 223 ## LCRIS_01861 hypothetical protein + Prom 278 - 337 5.7 2 2 Tu 1 . + CDS 402 - 1025 767 ## COG1309 Transcriptional regulator + Term 1056 - 1107 6.2 + Prom 1092 - 1151 7.1 3 3 Op 1 1/0.000 + CDS 1178 - 1717 671 ## COG0431 Predicted flavoprotein 4 3 Op 2 . + CDS 1731 - 2279 701 ## COG0431 Predicted flavoprotein + Term 2313 - 2345 3.2 + Prom 2290 - 2349 2.8 5 4 Op 1 . + CDS 2371 - 3162 606 ## COG2365 Protein tyrosine/serine phosphatase 6 4 Op 2 . + CDS 3165 - 4094 1093 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis - Term 4448 - 4509 12.1 7 5 Tu 1 . - CDS 4514 - 5050 517 ## LCRIS_01854 membrane anchor connecting MutS2 with cell-division Z-ring - Prom 5246 - 5305 11.9 + Prom 4989 - 5048 5.9 8 6 Op 1 4/0.000 + CDS 5212 - 5934 642 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 9 6 Op 2 25/0.000 + CDS 5952 - 6788 983 ## COG1475 Predicted transcriptional regulators 10 6 Op 3 25/0.000 + CDS 6807 - 7586 824 ## COG1192 ATPases involved in chromosome partitioning 11 6 Op 4 1/0.000 + CDS 7564 - 8451 1043 ## COG1475 Predicted transcriptional regulators 12 6 Op 5 4/0.000 + CDS 8444 - 8707 248 ## COG4481 Uncharacterized protein conserved in bacteria 13 6 Op 6 . + CDS 8761 - 9861 1560 ## COG0012 Predicted GTPase, probable translation factor 14 6 Op 7 . + CDS 9870 - 10655 755 ## COG4858 Uncharacterized membrane-bound protein conserved in bacteria + Term 10732 - 10768 -0.4 + Prom 10663 - 10722 6.5 15 7 Op 1 . + CDS 10802 - 10984 204 ## LCRIS_01846 ABC-transporter, ATPase and permease components 16 7 Op 2 35/0.000 + CDS 10948 - 12525 217 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 17 7 Op 3 . + CDS 12547 - 14400 1762 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 14478 - 14536 12.4 + Prom 14509 - 14568 8.4 18 8 Op 1 40/0.000 + CDS 14652 - 15338 831 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 19 8 Op 2 . + CDS 15340 - 16494 950 ## COG0642 Signal transduction histidine kinase 20 8 Op 3 . + CDS 16547 - 18118 1693 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 21 8 Op 4 . + CDS 18158 - 18877 663 ## COG1794 Aspartate racemase + Term 18898 - 18926 -0.1 + Prom 18912 - 18971 5.6 22 9 Tu 1 . + CDS 19019 - 19342 446 ## LCRIS_01835 putative protein without homology + Term 19357 - 19402 3.5 + Prom 19365 - 19424 5.3 23 10 Op 1 . + CDS 19491 - 19715 262 ## LCRIS_01834 hypothetical protein 24 10 Op 2 . + CDS 19791 - 19982 131 ## LCRIS_01833 putative protein without homology 25 10 Op 3 . + CDS 19997 - 20182 306 ## LCRIS_01832 hypothetical protein + Term 20244 - 20292 2.1 + Prom 20186 - 20245 11.1 26 11 Tu 1 . + CDS 20390 - 21793 1481 ## COG0277 FAD/FMN-containing dehydrogenases + Term 21796 - 21838 5.5 + Prom 21850 - 21909 5.2 27 12 Tu 1 . + CDS 21940 - 24246 2388 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases + Term 24259 - 24301 6.9 + Prom 24447 - 24506 7.2 28 13 Tu 1 . + CDS 24560 - 25957 969 ## COG1672 Predicted ATPase (AAA+ superfamily) + Prom 25975 - 26034 6.1 29 14 Op 1 9/0.000 + CDS 26194 - 27522 790 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 30 14 Op 2 . + CDS 27515 - 28315 674 ## COG3279 Response regulator of the LytR/AlgR family + Term 28340 - 28386 7.1 + Prom 28356 - 28415 6.1 31 15 Op 1 . + CDS 28439 - 30601 242 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 32 15 Op 2 . + CDS 30612 - 31208 558 ## LBA1794 gassericin K7 B accessory protein + Prom 31277 - 31336 3.9 33 16 Op 1 . + CDS 31363 - 32667 1273 ## LBA1793 hypothetical protein 34 16 Op 2 . + CDS 32668 - 32865 315 ## LBA1792 hypothetical protein + Term 33061 - 33125 0.3 + Prom 33355 - 33414 6.9 35 17 Op 1 . + CDS 33458 - 33709 333 ## gi|227879211|ref|ZP_03997083.1| conserved hypothetical protein 36 17 Op 2 . + CDS 33727 - 33921 308 ## gi|227879212|ref|ZP_03997084.1| hypothetical protein HMPREF0506_2085 37 17 Op 3 . + CDS 33991 - 34206 165 ## LCRIS_01817 putative protein without homology + Term 34226 - 34269 7.1 + Prom 34254 - 34313 11.6 38 18 Op 1 . + CDS 34373 - 34555 231 ## LBA1790 hypothetical protein 39 18 Op 2 . + CDS 34560 - 35099 321 ## LBA1789 hypothetical protein 40 18 Op 3 . + CDS 35114 - 35323 200 ## PROTEIN SUPPORTED gi|163756262|ref|ZP_02163377.1| 50S ribosomal protein L20 + Prom 35342 - 35401 5.9 41 19 Op 1 . + CDS 35456 - 35647 260 ## LBA1787 hypothetical protein 42 19 Op 2 . + CDS 35674 - 36096 394 ## LCRIS_01812 hypothetical protein 43 19 Op 3 9/0.000 + CDS 36114 - 37010 648 ## COG4152 ABC-type uncharacterized transport system, ATPase component 44 19 Op 4 . + CDS 37003 - 38217 875 ## COG1668 ABC-type Na+ efflux pump, permease component + Term 38235 - 38286 16.0 + Prom 38391 - 38450 8.3 45 20 Op 1 10/0.000 + CDS 38525 - 39280 918 ## COG1349 Transcriptional regulators of sugar metabolism 46 20 Op 2 19/0.000 + CDS 39282 - 40196 1337 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 47 20 Op 3 . + CDS 40216 - 42213 2597 ## COG1299 Phosphotransferase system, fructose-specific IIC component + Term 42354 - 42384 4.3 + Prom 42349 - 42408 10.0 48 21 Tu 1 . + CDS 42464 - 42709 196 ## LCRIS_01804 transcriptional regulator, ArsR family + Term 42809 - 42854 5.1 + Prom 42725 - 42784 8.4 49 22 Op 1 25/0.000 + CDS 42962 - 43858 928 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin 50 22 Op 2 42/0.000 + CDS 43912 - 44532 231 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 51 22 Op 3 . + CDS 44532 - 45326 926 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components Predicted protein(s) >gi|256541381|gb|ACPV01000093.1| GENE 1 32 - 274 223 80 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01861 NR:ns ## KEGG: LCRIS_01861 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 80 1 80 80 142 100.0 5e-33 MSSKPENKSIELTTDYANHSINMKFSDNLTDDRERGYILSAAFFSFCAAQGLDKQAVIEM ASSHYDQFTGDNGSSLFKRL >gi|256541381|gb|ACPV01000093.1| GENE 2 402 - 1025 767 207 aa, chain + ## HITS:1 COG:FN1004 KEGG:ns NR:ns ## COG: FN1004 COG1309 # Protein_GI_number: 19704339 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Fusobacterium nucleatum # 1 156 1 154 188 65 25.0 9e-11 MARKKEISKDKILDTAYKMAIKDGIEGLTARGIAKAGHFSTQPLYLEFNNMDDLRNQVLR RISNDLRTHTLQQKYVGEPLIDLDLSYIDFAQAHVNLFRAMFVDGKFGSKIIADTLMELG TEKFKEQYPDVDYDDQKIHDIVIANWISTTGMAALIVNEIASFSQTQIVNVLNAQIHDAM LNNRLSETQENPMFAADEEASLKDNLA >gi|256541381|gb|ACPV01000093.1| GENE 3 1178 - 1717 671 179 aa, chain + ## HITS:1 COG:SP1472_1 KEGG:ns NR:ns ## COG: SP1472_1 COG0431 # Protein_GI_number: 15901322 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 179 1 181 187 148 41.0 4e-36 MKVLALSGSNADNSFNEKLLKVIIKDLGDKYDFDFATVKGLPMYKEGVDAPASVLALGKK IADADMVLIASPEQQHSVSSALKSALEWLSSSVHPFHDKPVVIVSTSPMPQGASRSQTRL KSILGAPGFSAHVFAGDEFMMGLAPKQFDDKGDLTDAGTLKFLNHFFDEVDDWYAQLTK >gi|256541381|gb|ACPV01000093.1| GENE 4 1731 - 2279 701 182 aa, chain + ## HITS:1 COG:SP1472_1 KEGG:ns NR:ns ## COG: SP1472_1 COG0431 # Protein_GI_number: 15901322 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 182 1 181 187 134 41.0 7e-32 MKILAIVGTNAPFSFNRFLAKFIAKRYGEQADIEVKEIDQLKPFCRTDEPDDVTKKWIED VKNADGVILATPEYDHSIPAALKSALEWLGSHAGPNVMKMKPAAVVGTSYGIQGSSRAQE DAREILLSPDMSANVLPGNEILIGVAASNFDKETGDLTNEDYIKQLDAMMANFIKFVEQA NK >gi|256541381|gb|ACPV01000093.1| GENE 5 2371 - 3162 606 263 aa, chain + ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 6 260 46 297 298 137 31.0 3e-32 MKPNILPLEKVCNPRDLGGYVGYQGRKVKMHRLLRTGKISNITRYDQEFLLNYGLTKIID LRSPTECDHCPDSKIPGVEHFCIPISVDDNTKGGKKDLTQVFATYRQDQYAGFRMMCERY KSHVLKEHAQHSLNKILELLANTEKGAVLYHCSEGKDRTGLVTVVLLYLLGVDMETIRQD YLYSNYMLNNYRAKRDKKMQEEGENLCFRANMRILGSVSDAFLDTSLIAIEQNFGSFDNF LQEKIGVTTELREALRDLYLEEK >gi|256541381|gb|ACPV01000093.1| GENE 6 3165 - 4094 1093 309 aa, chain + ## HITS:1 COG:L171943 KEGG:ns NR:ns ## COG: L171943 COG1477 # Protein_GI_number: 15672350 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Lactococcus lactis # 14 303 16 306 325 326 52.0 3e-89 MIKDLALEQVVGDHHALGTSITLQIFGTQNRDLLQKSFDLIDHYEDIFTVNRDESEVMDI NHAAGEHPVQVSSAVYGLVKLAVEKSRENFGFNALIGPVVKLWHIGFKGAHVPKDEEIKD RMLLTDPFKVVLNDSDQSVFLKMKGMELDLGGIAKGWIADRIRDLWRAYGVEAGIINLGG NILLVGDSPKRISGQWSIGVQDPKQPRGDNITSVMVPECSAVTSGTYERYLVVNGKKYHH LIDPRTGYPVKTDLAGVTTFTKTSVEAEIECKRLFFAGKPLKGWHDNPDRIGTIFVYNDE HIEYDNFGD >gi|256541381|gb|ACPV01000093.1| GENE 7 4514 - 5050 517 178 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01854 NR:ns ## KEGG: LCRIS_01854 # Name: not_defined # Def: membrane anchor connecting MutS2 with cell-division Z-ring # Organism: L.crispatus # Pathway: not_defined # 1 178 1 178 178 286 99.0 2e-76 MIVTLIVLAYLAYKTYLGYKTGFTRYIIGLICSAIVFMVAIFMQNPFGNWLYTQYTGEMI KTNSTNNVELMIARFVAFFIIFFVGKMIMKIVKSWIPNKNPHATNLGSILDNVLGALASL IASYFVVYVVLSMFNALQNPWFMQQTIDSSFLRFIIYNTPGLSNGVFNNIFNIGKTVG >gi|256541381|gb|ACPV01000093.1| GENE 8 5212 - 5934 642 240 aa, chain + ## HITS:1 COG:lin2934 KEGG:ns NR:ns ## COG: lin2934 COG0357 # Protein_GI_number: 16801993 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Listeria innocua # 1 239 1 237 238 259 56.0 4e-69 MNPEKFILELSKHNFKLTDQQIEQFKIYFNYLIEVNEHVNLTRITEEDEVYLKHFYDSIT PLFTFGDVFKDGATLCDVGAGAGFPSIPLKILQPELKITIVDSLAKRLTFLKNLITKLDL KDVELVHGRAEDVGQNKLYREKFDLVTARAVARMSVLSEYCLPLVKKDGYFIALKGPKAE DELDDGQKALELLGGKLVKEEELTLPESEEERTLILVQKVKATPKKYPRQAGTPRRKPIH >gi|256541381|gb|ACPV01000093.1| GENE 9 5952 - 6788 983 278 aa, chain + ## HITS:1 COG:BS_yyaA KEGG:ns NR:ns ## COG: BS_yyaA COG1475 # Protein_GI_number: 16081151 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 17 277 28 283 283 214 48.0 1e-55 MSLFSFMHHDDEIPKNKQVQDLELSKIFPNRYQPRREFSDDSIKELAETLDKDGLLQPIV VREDGDDEQYEIIAGERRYRAAKSLGWQTIPAIVKNMSDDQAASLALIENLQREDLNPID EAKAYTNLMELNDLTQTALAKNMGKSQSYVANKLRLLKLDDNVQQALIAGKITARHGRAM IGLSNADQDRVLTEIEAKGLNVKQTEEIVKDVDAYFNPKPKAKKEAKRVVSRVPKDLKVQ INTIKKAVKLAEDSGIKVKVTENKDPDDYKITIELKRK >gi|256541381|gb|ACPV01000093.1| GENE 10 6807 - 7586 824 259 aa, chain + ## HITS:1 COG:BH4058 KEGG:ns NR:ns ## COG: BH4058 COG1192 # Protein_GI_number: 15616620 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 1 250 1 250 253 339 67.0 3e-93 MVNVISVANQKGGVGKTTTTINLAASIADRGYRVLIVDIDPQGNATSGLGIEKSEIDQDI YNVLIDEIPIQDTIHHTSTPKLDMVPATINLSGAETELISMMARETRLKSALDAISDQYD FVFIDCPPSLGQLSINAFTASDSILIPVQSEYYAMEGLSQLLNTIRLVQKHFNKDLGVEG VLLTMLDARTNLGAEVVKEVQSYFSKKVYKTIIPRITKLAEAPSYGQPITEYAPKSRGAK VYDDLAKEVLKAHDKRLKK >gi|256541381|gb|ACPV01000093.1| GENE 11 7564 - 8451 1043 295 aa, chain + ## HITS:1 COG:BS_spo0J KEGG:ns NR:ns ## COG: BS_spo0J COG1475 # Protein_GI_number: 16081148 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 15 289 4 277 282 259 54.0 5e-69 MTRDSRSKEPRKKGGLGRGLEALFEDEPQVQEAEEVQELDLGDIRPNPYQPRKRFDDKSL KELSDSIKENGVFQPIIVRESVNGYEIIAGERRFRASKLAKKKTIPAIIRKFNESQMMEV AVLENLQREDLTPLEEAQAYEMLQKNLGLTQEEVSKRMGKSRPYIANYLRLLTLPSKTKR LLQHGELSMGQARTLLSLKDKEKIDALAKRVVKEGMPVRKVEAVVSELNAKKPRSKKTVK KSAFIRASESQLANKFGSSVNISETQKGKGHLSIDFASTEELNRILDLLGVDLDG >gi|256541381|gb|ACPV01000093.1| GENE 12 8444 - 8707 248 87 aa, chain + ## HITS:1 COG:BH4052 KEGG:ns NR:ns ## COG: BH4052 COG4481 # Protein_GI_number: 15616614 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 66 1 64 65 80 54.0 8e-16 MAKEIVYNLADTVQMKKPHACQTNDWEILRMGADIKLKCMGCGHIVMMPRSEFNRKLKKL LTKANDPVNAKKEQYVPKDRIARPNFG >gi|256541381|gb|ACPV01000093.1| GENE 13 8761 - 9861 1560 366 aa, chain + ## HITS:1 COG:SP0004 KEGG:ns NR:ns ## COG: SP0004 COG0012 # Protein_GI_number: 15899953 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Streptococcus pneumoniae TIGR4 # 1 366 1 371 371 455 65.0 1e-128 MSLTAGIVGLPNVGKSTLFNAITKAGAEMANYPFATIEPNVGMVEVPDKRLARIQELIPA KKIVHTTFEFTDIAGLVKGASKGEGLGNKFLENIRQTDAIVHVVRAFDDDNITSVTGKVD PEEDINTINLELAIADLDAVNRRINKVKKVAQQGDKEAKAEMAVLNKLQPVLEEGNAARS IDFNEDEQKIVKGLFLLTSKPVIYVANIAEDSMADPESDKYYQIVKKHAESEGAECLGIS AATEEEIAGMADDEKKEFLEMEGVEESGLDRLIRAAYHILGLRTFFTAGGPETRAWTFHK GMKAPQVAGVIHSDFERGFIRAEVVSFDDLDKLETMQKVKEAGKLRLEGKDYEVQDGDII EFRFNV >gi|256541381|gb|ACPV01000093.1| GENE 14 9870 - 10655 755 261 aa, chain + ## HITS:1 COG:L196216 KEGG:ns NR:ns ## COG: L196216 COG4858 # Protein_GI_number: 15672175 # Func_class: S Function unknown # Function: Uncharacterized membrane-bound protein conserved in bacteria # Organism: Lactococcus lactis # 43 259 4 219 219 58 25.0 1e-08 MAEETKREQDQTKINTEKQAKLKKQAELDTQDEKIKQEDPKALREKLSNKNSDYVFRLEK ELQKQGSMSRADAVAMTNGLLSEIIIAQRHGQPANGLYLASPAIKAEQMLHPKKKPVATP TWQLMVDGALLYLAIFVGLCGILALFQTKNQPYNSQMGILTIASVGILMGIFMVKYNDWL MPQQGKRPSLVKLILRMLAIAVVLFVWMWILQIPALRVINPVLPAVADIVIAAAAYGVRY LFRKHYNIVGSAFAPRPQQHK >gi|256541381|gb|ACPV01000093.1| GENE 15 10802 - 10984 204 60 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01846 NR:ns ## KEGG: LCRIS_01846 # Name: not_defined # Def: ABC-transporter, ATPase and permease components # Organism: L.crispatus # Pathway: not_defined # 1 57 1 57 574 95 87.0 5e-19 MIKTLSKSIRQYKKLSLLSPMFVIGEVIIEMLIPYLVGILIDNGIMKGICPILVKWGYCY >gi|256541381|gb|ACPV01000093.1| GENE 16 10948 - 12525 217 525 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 300 506 37 249 329 88 30 8e-17 MSYISKMGLLLLVLTVISLILGASASYVSAHAAAGFAANLRQDMFYHMQDYSFENIDHFS SASLVTRLTTDVNNVQMAYQMIIRIAVRAPMMFIVSIIMSIIISPRLSLIFAVLGPVFAI ALGLIIKTAYPYFPKIFRGYDRMNQVVRENVRGIREVKTYVQEQPQIKEFKKSSGFIYKL FATAQKIMSLNALVVAAVLNISTLSICWFGAKEVVGGSLQTGQLISMFTYSNSVLFSLNI LAMITTQLVISGASGRRIASVITEEPTIEDPKKPLKRLTNGEIIFDHVSFKYEPADKADA LKDINLHIRPGETIGIIGETGSSKSTLVSMIPRLYDVTSGAVRVAGHNVKSYDLKTLRDN VAMVLQKNLLFTGTIKDNLKWGNENATDEQVVAAAKIAHADGFIREMPDGYDTMVEQGGN NVSGGQKQRITIARALLKNPKILILDDSTSAVDTSTERQIRTSLAKDMPETTKIIISQRI VSIKDADRIIVMDHGQIQAIGTHDELMKTNELYSSIAKFQEEQGK >gi|256541381|gb|ACPV01000093.1| GENE 17 12547 - 14400 1762 617 aa, chain + ## HITS:1 COG:CAC3415 KEGG:ns NR:ns ## COG: CAC3415 COG1132 # Protein_GI_number: 15896656 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Clostridium acetobutylicum # 1 616 1 626 627 619 52.0 1e-177 MEKSKNQTKGSRTKILLRLLKLVNSTSPWMLIVSMITIVLAAASNVIGSLFIERLINNYI VPLTKEKVPNYVPLATAIAVMFGIYAIGFLSNYLFNMLMGVLAQKVQYRVRNEMFVHMES LPISYFDQNEFGDIMSRYTNDIDTLMQMISQSIPQFTNSALSLLFVVVAMFSLSWQLTVF SFIIFALSFGIVRYLTVRSSHFFQVQQKKLGQINGYNEEMLNGLKVIKVFSHEPQSKEGF DKYNDELRQASGKANTYATILFPIMGNMGNLLYVLIAFVGGAAAINSWAPLSLGAIGSFL QLSKQFSMPIAQISQQLNSIVMALAGAERIFNLEDQKSEADQGTVTLSKKNDEVGSKWYW NVPQKDGSTKKVQVRGHIIFDHVNFSYVPDHQILHDISINAKPGMKVALVGETGAGKTTI SNMLNRFYDIDSGTITYDGIPIKNIKKDDLRKSLSIVLQETHLFTGTIMDNIRFGNPDAS DDDVYQAAKLSHADEFIHDLDHGYETVIDGDGGDLSQGQIQLLSIARAMIADEPVMILDE ATSSIDTRTEKMVQAGMDNLLIGRTSFVIAHRLSTIVNSDLILVLDHGHIIEHGNHDELI KQKGYYYELYTGKKEIQ >gi|256541381|gb|ACPV01000093.1| GENE 18 14652 - 15338 831 228 aa, chain + ## HITS:1 COG:lin2516 KEGG:ns NR:ns ## COG: lin2516 COG0745 # Protein_GI_number: 16801578 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 227 5 230 231 219 50.0 4e-57 MKILVVDDDKEIVELLSIYLKNEGYEPVAAYSGKEAITKLTTTPDIVLMILDVMMPNMSG IDVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ KQVKNEKPDILEVGPLVINRDSHEVKTIDGKTIQLTALEFGILYLLASHPNRVFSADEIF ERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVEA >gi|256541381|gb|ACPV01000093.1| GENE 19 15340 - 16494 950 384 aa, chain + ## HITS:1 COG:CAC0565 KEGG:ns NR:ns ## COG: CAC0565 COG0642 # Protein_GI_number: 15893855 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 109 373 233 497 499 181 42.0 2e-45 MKKERVKLTGAEKSELFAEGVVTVVLLLLLNLSIIILIHLAILQDESLVNGIYFLKKTIT FAGGYHLWSWQNVFIVLMGVGDLVVLYWRLIRRYHQMQLRHIILELHYIANGHFDHRINF RVRPELQRVVDSINSLVDSTVNSINEERAIEQSKDELITNVSHDIRTPLTSIIGYLGLLK AGVTSPEDQKKYVNIAYTKAEQMKALANDLFEYTTLKSTNTKLNLNDLHIYSMLEQVAAG FELEAEKNGIEIEIEARPKNLTIKADAEKLVRVYNNLISNAFKYGTGATKIKLVANLVNK REVELRVENNGAPIPKKSLNKIFERFYRVETSRNTKTGGTGLGLSITKGVVDLHHGTIRC ESNEKWTSFIIRLPLDPKKASPTH >gi|256541381|gb|ACPV01000093.1| GENE 20 16547 - 18118 1693 523 aa, chain + ## HITS:1 COG:L53929 KEGG:ns NR:ns ## COG: L53929 COG0769 # Protein_GI_number: 15673788 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 32 511 37 483 483 328 41.0 2e-89 MSISLNTCILILKEHHLLKSSAVQDTVATKMDYVSYDSRDIQTNTLFFCKGAGFRPTYLS MAKDNGAICYVAEQPYPEGKGMHALIVRDVSKAMALLSAAFFRFPQDDLFVVAFTGTKGK TTSAYFLKGMLDQANGGKTALISSVNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNG MTHLVMEVSSQAYKKNRVFGLTYDLGFFLNISPDHIGPNEHPNFADYLHCKLQLLVNSRK CIINAETAHFDEVYAAATTTTNPDSIYLFARDNFENPDLKQPIDFRFSSEQLDMKETRFN LVCASDKARKLPINGDYTLKMLGDFNESNGTAAIIGAGLAGLNHDQCAKGIRDVTIPGRM QTERTKKHGMVVVDYAHNKASMMALMRFMRNEFNDPKIIVVVGAPGDKGVSRRPGFSESL TAYADKAFLTTDDPGFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMATPDDVV LICGKGADAFQKIRGVNTPYPSDIVVAQQVINELEGQEEHFRK >gi|256541381|gb|ACPV01000093.1| GENE 21 18158 - 18877 663 239 aa, chain + ## HITS:1 COG:L92665 KEGG:ns NR:ns ## COG: L92665 COG1794 # Protein_GI_number: 15674208 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Aspartate racemase # Organism: Lactococcus lactis # 1 210 11 221 240 176 43.0 3e-44 MGTIATESYVRLINHRVKIAKDQDYLNYILVNDAQIPDRTAYIKDHTKPNFFYDLRDDVL GQAKLGPDFYVMPCNTAHYFYDDLAALTDIPFLHMMRIAVHQFIEKYPQEKKIGLIATEG SIYDHLYVDEIHAVHREAELGGPEIQPMVNKLIYSDIKEKGMVDGKLYHQILQKMHDDYG CNVILLGCTELSLAQEKAPDHPYNVIDPQSIIADVSIELALKIRNGMDSKKACAKYMYK >gi|256541381|gb|ACPV01000093.1| GENE 22 19019 - 19342 446 107 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01835 NR:ns ## KEGG: LCRIS_01835 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 107 1 107 107 181 98.0 8e-45 MYQENKDDLKQWLLSNITDLLVNEDTKPEERKILLDANHELENGESANYVCNLIRVGLDP LSWQGKLSHDVMKFHYAITSYARPVSAKAGACGGAALGMAFSGLMGK >gi|256541381|gb|ACPV01000093.1| GENE 23 19491 - 19715 262 74 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01834 NR:ns ## KEGG: LCRIS_01834 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 74 1 74 74 122 100.0 5e-27 MNNKNSKPKFSGLNMLISILIGWAIFFFGAWACMKFSSEFFAMPRFIAVIIVSIAGAVVI GPAIYGFLYLGRKK >gi|256541381|gb|ACPV01000093.1| GENE 24 19791 - 19982 131 63 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01833 NR:ns ## KEGG: LCRIS_01833 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 63 1 63 63 107 100.0 1e-22 MLVMKIIFNVLIAYLVICTVISIIRTVGAKREEWHVYNGQGMSFNQAFVRYFIEDATLGQ VTI >gi|256541381|gb|ACPV01000093.1| GENE 25 19997 - 20182 306 61 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01832 NR:ns ## KEGG: LCRIS_01832 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 61 1 61 61 98 100.0 7e-20 MLYLVYILIGMLIVLGVNLLITAFWALHDMYVKKENADLPTFKKYFVKNNNIPTKMSDLF N >gi|256541381|gb|ACPV01000093.1| GENE 26 20390 - 21793 1481 467 aa, chain + ## HITS:1 COG:CAC2542 KEGG:ns NR:ns ## COG: CAC2542 COG0277 # Protein_GI_number: 15895804 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Clostridium acetobutylicum # 2 463 4 465 467 399 42.0 1e-111 MDFKKLTATDIDNLSKFISDPERFITKPTVHWDHDQFKTVRAMPYLVIQPETNEEVENVV KYASDHHIPIVPRGNSTGLMGGNLTVEGGISLDMVKMNKVLEYEPESLTMTVQAGIRLKD IEEYLANKPFTYMPAPAMHWATIGGNVDTNAGGLKAIKYGVTREHIRELKVVLTDGKLYK FGAKAVKSSSGYSLKDLIIGSEGTLGVVTEVTMRLYPRPKQSINAIIPFPNLDKAIKSVP AILASGVVPTTVEFMGRKVISLWEKYYDEKFPIANGDGFIILGLDSLTKEELDAELKLAL AATKKFKAADAVILDANSEEAKKIWTCREALLLAIQKSTPKMDEVDICVPINHIPDVLHR VDELEQEVGMRIPNFGHAGDGNLHIYLCSDAMSDEEFEQKSHYVITELYKTAKALDGNMS GEHGIGYACKDWFEDFYGHDYTELLRKIKHVFDPNYVLNPDKIFPME >gi|256541381|gb|ACPV01000093.1| GENE 27 21940 - 24246 2388 768 aa, chain + ## HITS:1 COG:alr4773 KEGG:ns NR:ns ## COG: alr4773 COG1501 # Protein_GI_number: 17232265 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Nostoc sp. PCC 7120 # 26 751 42 759 779 544 37.0 1e-154 MINQLTDFTKDGQKITLNYENGPMILTVLTPEIMRFFQDRGNASNSYAIEGDKEIKTDFT VKNKGDHIEIATAKLIVKAYDDEKIDVFDEQGNPLVVDYRGKRTPIDRQMDEEHLKLAES EGHDVDKLLGKHDADYYEVVKSLADDEEFYGLGDKTGYLNKRHYAYDNWNTDNPDPQVES FTRLYKSIPILLGLKNGHPYGIFFDNTYRNHIDLGKESNDYYYYSAVDGNIDYYIIGGDS LKEVITNYTYLTGRVPMPQKWTLGYQQSRWGYSVSQKQVEKIAENLRKYDLPCDVLHLDI DYMRGYRVFTWRKDNYESPEKFVAKMRKLGFRIITIIDPGVKKDDDYKIYKEGIEKGYFV KAPDGTVYVNQVWPGDSVFPDFGRKEVRKWWAKNCKYLVDLGVSGIWDDMNEPASFKGEI PQNIVFHNEEEASTHKKMHNVYGHNMAKATYEGLKKFSGKRPFVITRAAYAGTQKFSTVW TGDNQSLWTHVQMMIPQLCNLGMSGFSFAGTDIGGFGADTTPELLTRWIEGALFSPLYRN HAALGTRSQEPWIFGEPTLSIYRKYLKLRYRFIPYLYDEFYRETKTGLPIMRPLVLNYEN DPQVYNLNDEYMVGEDILAAPVVQEGQTKRAVYLPKGKWIDFWNGVEHAGKTTILVDAPI GKLPLFIKKNTILPWGKEVSHISGEPDESMTFRLFGKKGKYVHYQDNGTDFKYQKGEYNL YKVKVNKDGSVKVKLEKHGFGPVYRRITVQFPNKKIEFKYKNGEYVRK >gi|256541381|gb|ACPV01000093.1| GENE 28 24560 - 25957 969 465 aa, chain + ## HITS:1 COG:PAB1516 KEGG:ns NR:ns ## COG: PAB1516 COG1672 # Protein_GI_number: 14521501 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Pyrococcus abyssi # 1 428 1 418 469 258 36.0 1e-68 MFVGRHQELEQLNQAYQENDFQFTVIYGRRRIGKTSLINEFLKDKKSIYYVALEENAEDN LKRFSDAISIFKNTDQGGKEKFANFEECFKEITHLAQKQRVILVIDEFPYLAKAYPTISS MLQSYIDHEFKETNLFLILCGSSMSFMERQVLGYQSPLYGRRTLALKLEPFKLSEAHEML PKLSKEDAFIINTVCGGVPQYLSYMSDSMSVADNIKKNFLSKSGRLFDEPNNLLQQELRD PTNYNSIINAIASGASKHSKIAQSAHLQTGPLTTYLNNLIDLGIVEKKLPVTEQKKSKSK NIVYRICDGMFRFWYTFVGKQTDLIERGLTDLAWVKVQKGLSDFMGPEFEKYSQDFMWSQ DMNEKIVPNPFIHLGNWWGTDKRTHQQVELDIVGFSDDERDGYFGECKWKNEPISRSVLE KLITNSEIFKYPLKHYYLFSKSGFTDSCQELAKKINCQLFTFEEI >gi|256541381|gb|ACPV01000093.1| GENE 29 26194 - 27522 790 442 aa, chain + ## HITS:1 COG:CAC0080 KEGG:ns NR:ns ## COG: CAC0080 COG2972 # Protein_GI_number: 15893376 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Clostridium acetobutylicum # 161 427 180 430 447 87 29.0 7e-17 MEKIVLFLFLNVFSSLADVWCFFKISRVRSKKRQILFLCIANIFLGLLLSIGNIGVIFTN ILETLLFVLYLRKNNTLEILFGSIILVCTLDLLVDIVSDMITQVMSFTLIGQLSLRFLLI LMMIVAIKLGNGKIYNYLANQNNKIFVGILAYTYVSTVSISIIYIQSKSFTPLTLFFSLY ILIQTIFAIFIYHEMTMVQEKLLNKKDQEKLKQQQHQLEEYASYLEKSEDDLRAFRHDYK NILNSLKVSAQEGNVQEVIQKLDKYTETNLNSKALLKYKDLNHIYVKSIKSIIIPKITEL YNLDIPYNFECRNNIRNLPDHVDELDLVRIIGITFDNAIEESKALIAEKHDIRSAEVQIM VYSDDPDEFEFEIRNKIQNKNISTSQIQQRGFTTKKDHKGLGLANIKEIESKYPDMSISY TIQDGWFDFYMTIDTEDGEEDE >gi|256541381|gb|ACPV01000093.1| GENE 30 27515 - 28315 674 266 aa, chain + ## HITS:1 COG:SPy0245 KEGG:ns NR:ns ## COG: SPy0245 COG3279 # Protein_GI_number: 15674427 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Streptococcus pyogenes M1 GAS # 67 247 56 232 246 102 31.0 6e-22 MSKFPIIVCDDDKDLANQMAKNINASIQDLIDDNEGYAELNESVTFVANDFAQAVGYIVT NDIKNGIYFLDIELSRESKAKNGVDLAEFIKKNDENAQIIFVTAYDKYAPLTYRRRIGAI DYISKSMSSDKIIQRIEETLCNAFDNLSNRIKFSQRDFTYKIGRRVCKVAGGDILFIEHS TTQHKVHMVTENGEVEYKANITQIDKENPFLAKVSQSSLVNPKNISAIDTKERIIIFDNG QMVTYSRSYKAVVKKLVDKFENIKVE >gi|256541381|gb|ACPV01000093.1| GENE 31 28439 - 30601 242 720 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 486 710 12 233 312 97 30 1e-19 MLLQYKSIYVPQVDESDCGVACLAMILKKYHSRVFLAHLRHSARTNLEGTTALGLVKTAQ AFNLKTEAVKADMSLFDPDADIQYPFIVHVLKQGELLHYYVVIKATKNYLVIADPDPSVG LTKMSKEKFSQEWTGIALFMVPNDDFEPLKEKKQNLWSLFPYMFKQKKLVTNIILAALLM TIISICSSYFLQGLIDTYIPSGTYQTLSILAIGLLIAYVFNSIFSYGQNFLLDVLGQRLS IDLNLQYIRHIFELPMEFFVTRRTGEITSRFSDASRIIDALASTVISLFLDLSIVIVMGI VLAIQNSTLFVITLLSLPIYAVVILSFSKKFEKMNNDQMESNAVLSSSVIEDIQGIETIK ALNSEQTRYRKIDSQFVDYLKKSFRYSKTESLQSALKTFIQLSLNVIILWVGAKVVMNGQ MSIGQLMTFNALLSYFVDPLQSIINLQPTLQSANVAQNRLNEVYMVKSEFQKDAQIRDAK QLAGEIEYHHVDYHYGYGVDVLKDINLKIEPNDKLAIVGMSGSGKSTMVKLLVDFFSPSK GKLTFNGFNSTKVDKHVLRSYVNYVPQTPYIFSGTIKENLLLGSRPDITEKDILKACQIA EIESEIEQLPLQFETKMDENAKILSGGQKQRLTIARALLSPAKILIFDEATSGLDTITEK KVVDNLMKLKDKTIIFIAHRLAIAQRTNNIVVVDHGQIVEQGSHEKLMQKHGFYYNLVEN >gi|256541381|gb|ACPV01000093.1| GENE 32 30612 - 31208 558 198 aa, chain + ## HITS:1 COG:no KEGG:LBA1794 NR:ns ## KEGG: LBA1794 # Name: not_defined # Def: gassericin K7 B accessory protein # Organism: L.acidophilus # Pathway: not_defined # 1 196 1 196 196 325 81.0 7e-88 MNNKDYESTEYYSYKFKNFSTMIIIPMAILVLILIVGSFFATRQSTVTSTGIVEPQNTLN IANRNYHEGQIVRRNREKWLVHLDDKQENTVHLFPMIKAKRTVNVVTYFPGNKIGAIKKG QTLYFQVANASGTMDRLVGKVKEIGVYPINLRGNNVYEVICKAKSKKNLKYGMEGNATII TGKSTYFEYFKDKILNQN >gi|256541381|gb|ACPV01000093.1| GENE 33 31363 - 32667 1273 434 aa, chain + ## HITS:1 COG:no KEGG:LBA1793 NR:ns ## KEGG: LBA1793 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 434 1 438 438 489 73.0 1e-137 MNKKKILMLMLSPAVLLMMNSTIVHADEGNTSQENKSEVVSKTENDDKNVSESEQKTSSK NEAAQTQNKQEEEPAASEDQNNQSQNTNNQDPNNANEEDSEDDEDEVSVEDYENNVKDFH RVKMQEVKDLLAEKNNQEHLMYIGRPTCYYCRQFSPDLKDFNEIVKGKLLYFNIDAEEGA HEYAFKEIGIPGTPTTMRFINGKIISAWVGGEKTGQELYNFLYSDAANKLVEQAVIKDQP KDDNTTESESNEIPEVTVAEDDQTQSSNDVAITDFVENSVFENAANVASSTADLTKVTTG NQEYAAPRAETKKKTVKKPVKPKIVATKVKKTAKSHKKNIILAAVSEKHGSVKENKQFDS VKVQSKPYSAVKNNQNRITKLKRLENDTIKNGSTQSLPSTGEKDNIWGQLIGMISILISL VLGISLGKKTKEEK >gi|256541381|gb|ACPV01000093.1| GENE 34 32668 - 32865 315 65 aa, chain + ## HITS:1 COG:no KEGG:LBA1792 NR:ns ## KEGG: LBA1792 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 56 1 56 63 90 76.0 2e-17 MKRIIISKDEVLLSGILGGSGSVDDIGLTDTEHMLPLYSKKGGNHKRDVYLENPKFFQSS FHRGR >gi|256541381|gb|ACPV01000093.1| GENE 35 33458 - 33709 333 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227879211|ref|ZP_03997083.1| ## NR: gi|227879211|ref|ZP_03997083.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 83 14 96 96 133 100.0 3e-30 MNKFETLTYEELSAVFGGNGGKARRRRKITNCAKAIGMGALKDGLKYGIAGTAFGTPIGT VGGAIFGANVGIISGSVSCVSHL >gi|256541381|gb|ACPV01000093.1| GENE 36 33727 - 33921 308 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227879212|ref|ZP_03997084.1| ## NR: gi|227879212|ref|ZP_03997084.1| hypothetical protein HMPREF0506_2085 [Lactobacillus crispatus JV-V01] # 1 64 1 64 64 115 100.0 7e-25 MMKEMNYKELEKVSGGTNWLGVGGSCLSGFIDALPSGSGMIKGCVEGAVKDFAKQNRHKK HKHR >gi|256541381|gb|ACPV01000093.1| GENE 37 33991 - 34206 165 71 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01817 NR:ns ## KEGG: LCRIS_01817 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 61 1 61 71 92 86.0 4e-18 MKNKILTERQVRNRSIIAGILALLIGLVWDYFQYKTLSFGTVFWNIVESVAFVIFMNIFM NSYYKKKSKKQ >gi|256541381|gb|ACPV01000093.1| GENE 38 34373 - 34555 231 60 aa, chain + ## HITS:1 COG:no KEGG:LBA1790 NR:ns ## KEGG: LBA1790 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 60 1 60 60 71 93.0 1e-11 MLPEKKRQIGSIIGMLIMMAILVFANLGGTWSVLRITLLVIGVTGVIGSAIYRIIHILRG >gi|256541381|gb|ACPV01000093.1| GENE 39 34560 - 35099 321 179 aa, chain + ## HITS:1 COG:no KEGG:LBA1789 NR:ns ## KEGG: LBA1789 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 179 1 179 179 238 88.0 1e-61 MKKLILNLLTIFAWIYQIFCVIGIIMWIVMGGVVLFGIHNPDFRAGFESGRGIKGVSVDN YIGAIVVVLLSLIMMSVAAFLICRYARLIVKNIKQEVYFADSNLNLLKKLLISVAGYTLI SIIDYIIFITHRTWFAKSSNNVLYPSGVTTGLLFLAVLYVVYLVFKYGMKVQEDADSII >gi|256541381|gb|ACPV01000093.1| GENE 40 35114 - 35323 200 69 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163756262|ref|ZP_02163377.1| 50S ribosomal protein L20 [Kordia algicida OT-1] # 2 64 3 65 67 81 65 7e-15 MIEVTLDFMLLKRKMSSKELAEKVGITPANLSILKTGKAHGVRFDTLSKICEVLDCQPGD LLVYKKDEE >gi|256541381|gb|ACPV01000093.1| GENE 41 35456 - 35647 260 63 aa, chain + ## HITS:1 COG:no KEGG:LBA1787 NR:ns ## KEGG: LBA1787 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 63 1 64 64 99 96.0 5e-20 MLYLIYIVLGLLIILAVNYAVTAFLAVHDLLENREKDQLSFGDAFKKYFAKNNIPTKFSD LFN >gi|256541381|gb|ACPV01000093.1| GENE 42 35674 - 36096 394 140 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01812 NR:ns ## KEGG: LCRIS_01812 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 140 1 140 140 220 96.0 1e-56 MNNEKFARENKRIIEGMGIGALVGPILALVMMYVKTAGSPQPFQIIMSIGAGLAFGLMFG GIMSASLVLNKTVASKIPWQKKVLKLAPQVIGTGVVVASAGVVITLVTNWGSVDIVKTIF STDTLWQFFDGVLLGLITIR >gi|256541381|gb|ACPV01000093.1| GENE 43 36114 - 37010 648 298 aa, chain + ## HITS:1 COG:SP1717 KEGG:ns NR:ns ## COG: SP1717 COG4152 # Protein_GI_number: 15901551 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 1 294 1 294 297 376 62.0 1e-104 MLKIEHLNKSFGSTQVLFDVSFSVSDGRILGLVGKNGSGKSTIFHSILKFVDYDGQISID GHSFNAKDYDNIGYLPEERSLMPKLTISDQVVFLASLKGMPAKKVKEELPDWLSRLAVKG IPMDKIKSLSKGNQQKVQMIATLIHQPKLIILDEPFSGLDPVNVDLMKQLILEEKRKGAT IIFSDHDMRNVEELCDDVVMINDGHIVLNGPVNEIKNSFGLTRIFVRTDKSATELSALPG VKDIILQNNGMKLLILADEKYGKDIFNQLSAGQYIQTFDQEPPTLDEIFKMKAGARHE >gi|256541381|gb|ACPV01000093.1| GENE 44 37003 - 38217 875 404 aa, chain + ## HITS:1 COG:SP1716 KEGG:ns NR:ns ## COG: SP1716 COG1668 # Protein_GI_number: 15901550 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 402 1 396 399 255 36.0 1e-67 MNKIWLVAKETYRREVKTWSYLLMILAPFLLVFFSFVIGMVSAGGSDDNYVGVVTSNSAL KQAIKKSEDFDNYSTEAKAKKAYKDEDIDGYVLIEQKNNQLAATYYSDEKMDSDLKSELL TSLNTAQQQLNLSKAKLTTKQTQSLATRAQFKQQVKHVDKKSFDNDPVKQISFWVLLIIL YMLVITYTQVTAQDIATEKGTKIMEVIFSSMPGGDYFTGKILGIFGEIITQVLIYVVGFV AVYCAAPYIDGFSDLFRQYKPMIDQAIGNLASWGLVFTIIGLVLFIIFAAFCGALVAKSE NANKAVGPLSTLMLIGFLFTVNMQSGGDTIFAKVLSYIPFLSSFVMPARVIMGNATNLEA AISALIALAATVASFIWIRKIYPNLILQTDDVGPWQNFKRSLRG >gi|256541381|gb|ACPV01000093.1| GENE 45 38525 - 39280 918 251 aa, chain + ## HITS:1 COG:BS_fruR KEGG:ns NR:ns ## COG: BS_fruR COG1349 # Protein_GI_number: 16078502 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 1 230 1 229 251 176 41.0 4e-44 MLTQERQSLIEDYVNQHELCRVSELCDLTATSESTIRRDLIQMEKNGILKRVHGGAQSVK HFSRDVSQNVRFSLNHDAKITIARYAVQNFVRPGDNVFIDAGTTTYEMVPFLAEVANVKI ITNGVETALCSLNHGINTILIGGEVKDDTHAVIGQTALSQIKAMNFSASFVGANGIEKNG NLTTPDPEEAAVKAAEIKQARHAYVLTDNSKIGERNFAVFANTSDVIVVTDQLKPGQKRS LPVGIELEEAK >gi|256541381|gb|ACPV01000093.1| GENE 46 39282 - 40196 1337 304 aa, chain + ## HITS:1 COG:lin2430 KEGG:ns NR:ns ## COG: lin2430 COG1105 # Protein_GI_number: 16801492 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Listeria innocua # 1 304 1 304 307 296 51.0 4e-80 MIYTVTVNPALDYVLQLEKVNRGEVNRTNNDSFLAGGKGINVSQILNQLNVDNTAWGFVG GFTGKELVRQLNQKRIESDFVTISDNTRVNVKIHAEKETEINAAGPNITDQEITAFKDRL NDLKKGDIVVMSGSLTPSLPTDFYQSLLPTIKEAGAEFVVDTTGQALLDTLAYKPLVIKP NHHELADLFGVTFDSSDVMLEYAQKLLDKGAQNVMVSMAGEGGFLLTKDHVYHAKGAVGT AVNSVGAGDSMIAGFVGTYYKTQDPKEGFRIGMACGAATAFTKDIAVKSQIDAVLPQIKV EQIS >gi|256541381|gb|ACPV01000093.1| GENE 47 40216 - 42213 2597 665 aa, chain + ## HITS:1 COG:BH0828_3 KEGG:ns NR:ns ## COG: BH0828_3 COG1299 # Protein_GI_number: 15613391 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Bacillus halodurans # 309 660 2 335 336 293 47.0 6e-79 MRIKDILSPDSMIMELKAKNKEDAIKEMADLEVATDIVNDEDAFIKSIWARENESTTGIG GGIAMPHARNKSINKARVLFAKSKEGIDYNSLDGQPVHLFFMITAPDGADNTHLQALAKL SGLLIDPDLVEALKNTKTPEEVIDLFEKAEAKKDEEDKKAAEAKKAKEAAKAQGTSDDDN KPLIVGVTACINGIAHTYMAQEALIKEGKKRGIEVRIETNGSEGVKDKLTPDEIKRAKGV IIASDKKVDMPRFDGKHLVNRPVVDGINKPGELIDDIMGGKADVYRASAQDKSTESSSTE KPGLWAGIYKNLMNGISHMLPFVIGGGILMAISFIVENYMGGAKTPAFIFLNNAGNLAFA FMVPVLAAYIAESIGDLPALMPGFVGGYMASIVNGQFQVNVQAHATSPAGFLGGIAAGFI AGYLMVGLKKVFAKLPRSVEGMKPMLFYPILGLLFIAAIMFYIINPIFSGINFAITHFLN GMGTGNLVLLTTILAGMMSIDMGGPFNKAAYVFASGAFANDPHSATAAILMAAVMVGGMV PPFATAIGTTFFKNKYTVEERRAGVSNWVLGFSFITEGAIPFAAADPGRVIPSCIIGSAV GGALVGLWHVGVPAPHGGLWVSPLAGNIGGPSHILFYFLATIIGSIVAGLIMSFWKKNVK EDPNE >gi|256541381|gb|ACPV01000093.1| GENE 48 42464 - 42709 196 81 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01804 NR:ns ## KEGG: LCRIS_01804 # Name: not_defined # Def: transcriptional regulator, ArsR family # Organism: L.crispatus # Pathway: not_defined # 1 81 15 95 95 120 95.0 1e-26 MNHPIRIQILYYLNDNQKSSVNNLVKQFDVSQPAISRHLRILEEAKLVKSERVRQERYYS LEDKHVIKILDVLRQHVKEEF >gi|256541381|gb|ACPV01000093.1| GENE 49 42962 - 43858 928 298 aa, chain + ## HITS:1 COG:ML0337 KEGG:ns NR:ns ## COG: ML0337 COG0803 # Protein_GI_number: 15827093 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Mycobacterium leprae # 17 293 4 291 302 105 24.0 1e-22 MQNAKSKITKLISFLGLIGVIALLVSACSNRSNSTSNSGKVSIITTTNVYADIAKNVVGK YGTAKAIISNSSTDPHDFEPTTADAKELTKANIIVANGLGYDSWMNKLASSVSKKPVLVG EDLMGLKKGDNPHIWYNLSMPTKYVNYLVKRLSKLDKKHAAYFKANGDKYLAKINQVKQL VKTNKKNSKPVFVSEPVFDYALREVGYKIGDKGFEEAIENGTDPSPKMINQMNNEIKAKK IAFFVNNTQASSSTVKSFVKLAKENNIPVLNVRETIPNHTTYLAWMKENYQNLAKIEK >gi|256541381|gb|ACPV01000093.1| GENE 50 43912 - 44532 231 206 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 8 201 294 508 563 93 31 2e-18 MRFDTKDVFQDLSFQLEDGSMTALLGPNGTGKTTLIKILMGMLKPTAGNFKFDSDVKLGY VPQFRNIDAEYPLSIRAFIGLNAPLFKTKKVKEQIDHQLEETHLEKIQNTRMGEASGGQK QRAYLAQALLDHPNMIILDEATASLDPAAKEELMGLIKHLNREHKITVLFVTHDIPLAKK YMTDYLYLNKGTIRQGKMDKFKEDFE >gi|256541381|gb|ACPV01000093.1| GENE 51 44532 - 45326 926 264 aa, chain + ## HITS:1 COG:L165709 KEGG:ns NR:ns ## COG: L165709 COG1108 # Protein_GI_number: 15674095 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Lactococcus lactis # 1 254 4 259 269 97 31.0 2e-20 MFQYEFMRYAFLASTFIAITCGVVGVYVVARSYAFLAHTLSEIGFAGAAFAVFIGIAPLW GMLLFTLLGSIGVGELSLHSDQKESSVSAISALFIGLGVLFLAISGSNSRYATNILFGSI IGVDKQGVIQLVVLSILVLLLIILVARSLNFDSFDHIGAVAHGVHTGWVGIAFLVALAMS VAIGAQIVGSLLVFILLTLPSSTARYIGKTIPAMISWSVFFALVGVWAGLYLGFITNWPV TFFIATIEVVIYLIAYGIHVIKHR Prediction of potential genes in microbial genomes Time: Wed May 25 05:42:46 2011 Seq name: gi|256541380|gb|ACPV01000094.1| Lactobacillus crispatus 125-2-CHN cont1.94, whole genome shotgun sequence Length of sequence - 3002 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 110 - 169 7.1 1 1 Tu 1 . + CDS 241 - 1755 1363 ## COG1620 L-lactate permease + Prom 1757 - 1816 6.3 2 2 Tu 1 . + CDS 1994 - 2467 325 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen + Term 2468 - 2527 6.3 + Prom 2590 - 2649 5.5 3 3 Tu 1 . + CDS 2687 - 2878 92 ## gi|227879232|ref|ZP_03997103.1| hypothetical protein HMPREF0506_2104 Predicted protein(s) >gi|256541380|gb|ACPV01000094.1| GENE 1 241 - 1755 1363 504 aa, chain + ## HITS:1 COG:BB0604 KEGG:ns NR:ns ## COG: BB0604 COG1620 # Protein_GI_number: 15594949 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Borrelia burgdorferi # 5 497 6 500 500 331 41.0 2e-90 MWIRFAIALLPIVWLIISLGVMRMPAARACVIGLILTMVLAVFSFKLPVLDTASGALEGI IMGIWPIMFVIVMALFAYNVTTESGGMKTIQDMLATISTDKRIIVLIIAWGFGGFLESIA GFGTAVAIAAGILIAFGLEPIRASVISLIANTTATAFGAIGLPIITLGEVTGLKQEELSF IVTLQLFVLVVLVPFILVILTEGSIKAIKGVGLITLMSGLGMAIPQVIAAKFVGAELPAI VGALCSIAITILLTRWHDEEEEPDVEKPSTKEMLKACSPFILVFIFVIFASSLVPAVNNL LNKVTTNLVVYTGKNPNTLSISWLSSPGTLLFVATLIGGAIQGVSFKKMMQILGQVIKSV WKTTITVCAIVGLAKVMVYAGMTDALAVALVSLLGPAYPLFAPLIGALGTFLTGSATSAN VLFGNLQLSAAMDLGVSKYWVVASNMTGATAGMLSPQNIAVATGSINREGDEGEILKETV KWGGLYLVVCCVFLYVVGLIAGMI >gi|256541380|gb|ACPV01000094.1| GENE 2 1994 - 2467 325 157 aa, chain + ## HITS:1 COG:Cj1552c KEGG:ns NR:ns ## COG: Cj1552c COG2865 # Protein_GI_number: 15792860 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Campylobacter jejuni # 1 147 341 487 488 85 31.0 5e-17 MIEPLRFLDVPPRSRNPELANILSKFHITESRGTGIDKVVYSLEEAHLPTVEILSKGTTA TQVTIREEKAFSELAITEKNESIYWDASLKYVNDMKISNSSIRKTFNLSDKDASQVSKAI ASSLEAYLIKPYDKNASKRYMEYIPYWGMAVQDIYHE >gi|256541380|gb|ACPV01000094.1| GENE 3 2687 - 2878 92 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227879232|ref|ZP_03997103.1| ## NR: gi|227879232|ref|ZP_03997103.1| hypothetical protein HMPREF0506_2104 [Lactobacillus crispatus JV-V01] # 1 51 1 51 63 71 100.0 2e-11 MFFGVQMGVCFSIVFFEKKRGKIMQKLSILVLKKVVGGRSKIRRRVFKNNSYGYGNSSGG GAF Prediction of potential genes in microbial genomes Time: Wed May 25 05:42:51 2011 Seq name: gi|256541379|gb|ACPV01000095.1| Lactobacillus crispatus 125-2-CHN cont1.95, whole genome shotgun sequence Length of sequence - 798 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 592 393 ## COG3328 Transposase and inactivated derivatives Predicted protein(s) >gi|256541379|gb|ACPV01000095.1| GENE 1 2 - 592 393 196 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 196 27 222 391 223 51.0 2e-58 QQAVNDLLEAELTAFLGYDPYARAGWNTGNSRNGAYFRKVDTQFGEIEIQVPRDRNGMFH QHTLPDYKQHSNVLESMIIKLYSKGVTTREIADLIEKMYGSHYSPAQVSNISKQMIPKVE AYHQRKLSDKFFCVYLDATYIPLRRETFEREAVYIAIGIKPNGHKEVIDYRIAPSENVEN WTEMLQDMKSRGLEQV Prediction of potential genes in microbial genomes Time: Wed May 25 05:42:53 2011 Seq name: gi|256541378|gb|ACPV01000096.1| Lactobacillus crispatus 125-2-CHN cont1.96, whole genome shotgun sequence Length of sequence - 4514 bp Number of predicted genes - 8, with homology - 7 Number of transcription units - 5, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 43 - 102 3.1 1 1 Tu 1 . + CDS 124 - 390 285 ## gi|227878162|ref|ZP_03996136.1| hypothetical protein HMPREF0506_1137 + Term 493 - 541 5.6 - Term 530 - 586 9.0 2 2 Op 1 . - CDS 603 - 1079 664 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis 3 2 Op 2 . - CDS 1138 - 2256 1114 ## COG0620 Methionine synthase II (cobalamin-independent) - Prom 2432 - 2491 7.0 - Term 2437 - 2483 10.5 4 3 Tu 1 . - CDS 2710 - 2907 87 ## - Prom 2950 - 3009 4.2 + Prom 2690 - 2749 5.3 5 4 Op 1 . + CDS 2958 - 3428 481 ## LCRIS_01796 putative protein without homology 6 4 Op 2 . + CDS 3440 - 3631 225 ## COG1476 Predicted transcriptional regulators 7 5 Op 1 . + CDS 3991 - 4152 137 ## gi|256844060|ref|ZP_05549547.1| conserved hypothetical protein 8 5 Op 2 . + CDS 4152 - 4512 89 ## gi|256844061|ref|ZP_05549548.1| LOW QUALITY PROTEIN: histidine kinase Predicted protein(s) >gi|256541378|gb|ACPV01000096.1| GENE 1 124 - 390 285 88 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878162|ref|ZP_03996136.1| ## NR: gi|227878162|ref|ZP_03996136.1| hypothetical protein HMPREF0506_1137 [Lactobacillus crispatus JV-V01] # 1 88 1 88 88 142 100.0 5e-33 MGELMKDKYYLALADEVELDNKDNVKKAVIGLIILEVVLQLCYQLYPVLLNLLGKNQRVM ATVILVAYVTVFAVVAKHFSFTTRVFNF >gi|256541378|gb|ACPV01000096.1| GENE 2 603 - 1079 664 158 aa, chain - ## HITS:1 COG:SPy1642 KEGG:ns NR:ns ## COG: SPy1642 COG1854 # Protein_GI_number: 15675515 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Streptococcus pyogenes M1 GAS # 4 157 7 160 160 248 72.0 3e-66 MGKVESFELDHTKVKAPYVRLITVEKGQKGDQISNFDLRLVQPNKNAIPTGGLHTIEHLL AGLLRDRIDGYIDCSPFGCRTGFHLLVWGTPSTTEVAKALKESLEEIRDNIKWEDVPGTT IESCGNYRDHSLFSAKQWSRDILAEGISDDPFERHVVE >gi|256541378|gb|ACPV01000096.1| GENE 3 1138 - 2256 1114 372 aa, chain - ## HITS:1 COG:CPn0143 KEGG:ns NR:ns ## COG: CPn0143 COG0620 # Protein_GI_number: 15618067 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Chlamydophila pneumoniae CWL029 # 5 371 12 373 374 330 44.0 3e-90 MTELHYDIVGSFLRPAELKKARAEFEEGKIKQEELTHVENKEIRELVQKEIDHGLKIVTD GEFRRSYWHLDTFWGFGGIKHTKQAHGYFFHDEETRNDSAQVEGKIKFTGKHPDLSSFEY LKKVVDETGANVIPRQSIPAPAQFYAELVRGEENIAALKKIYSSEEDLLTDISKAYRDLI LALYDAGCRDIKLDDCTWGMIVDKRYWKSHLQDDFSLDDLKRKYLKLNNDAIKDLPTDLR ISTHICRGNYHSTWAAQGGYGLVADYVFAKENVDAFYLEFDNDRSGSFDPIAQIPNDKLV VLGLVTSKKAELEDPQKLIARIKEAAEFHPLNSLALSTQCGFASTEEGNTLTEDDQWQKI KLVVDTAKQVWS >gi|256541378|gb|ACPV01000096.1| GENE 4 2710 - 2907 87 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSGLFYIIDDLFTMHKNNRYHFGEFDTDYLFMILISSLLTTNNFQNLLDIFFDRRIIMTI KLIKA >gi|256541378|gb|ACPV01000096.1| GENE 5 2958 - 3428 481 156 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01796 NR:ns ## KEGG: LCRIS_01796 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 2 156 4 159 159 182 63.0 3e-45 MLKFMAFASLFAVMAFILVVTFAGNYRAAKYDERQELIRARGDRYGFLVLIVGEVLSVFF MQTDFYAQHGIAVNFSIIMLALAVMSVYDILHGAYFAFNEEHIKANSRVDIAIGVCLILG YLNDFNSAMTIMEIYWLIVGTVSLFQLHRDKESDVE >gi|256541378|gb|ACPV01000096.1| GENE 6 3440 - 3631 225 63 aa, chain + ## HITS:1 COG:SPy1934 KEGG:ns NR:ns ## COG: SPy1934 COG1476 # Protein_GI_number: 15675737 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 57 6 62 68 84 73.0 4e-17 MKAARAGKDLTQEDLAQKVDVSRQTISAIEKGNYNPSVNLCIRICQALDKTLDDLFWPEE KED >gi|256541378|gb|ACPV01000096.1| GENE 7 3991 - 4152 137 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256844060|ref|ZP_05549547.1| ## NR: gi|256844060|ref|ZP_05549547.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] # 1 53 1 53 53 82 100.0 9e-15 MKKLNEEELVEVKGGFAITNMVFNQNLFAMNNIVNKSKHPLFHFNWKKFLGLK >gi|256541378|gb|ACPV01000096.1| GENE 8 4152 - 4512 89 120 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256844061|ref|ZP_05549548.1| ## NR: gi|256844061|ref|ZP_05549548.1| LOW QUALITY PROTEIN: histidine kinase [Lactobacillus crispatus 125-2-CHN] # 1 120 1 120 120 168 100.0 1e-40 MIAIQGSISPIVDLFIFYKLSNWKFQKKDLVFTIFFVLACFTTSFTAKINDFVVDIFQVI CILLFSYFIKRDKRIKSNIGAILFFEMVDLLTTIGVEIISLFFGINVGSVIWTFLILDIA Prediction of potential genes in microbial genomes Time: Wed May 25 05:43:15 2011 Seq name: gi|256541377|gb|ACPV01000097.1| Lactobacillus crispatus 125-2-CHN cont1.97, whole genome shotgun sequence Length of sequence - 2295 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 36 - 95 5.8 1 1 Op 1 9/0.000 + CDS 145 - 1053 739 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 2 1 Op 2 . + CDS 1057 - 1881 648 ## COG3279 Response regulator of the LytR/AlgR family 3 1 Op 3 . + CDS 1862 - 2294 345 ## COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Predicted protein(s) >gi|256541377|gb|ACPV01000097.1| GENE 1 145 - 1053 739 302 aa, chain + ## HITS:1 COG:SP2236 KEGG:ns NR:ns ## COG: SP2236 COG2972 # Protein_GI_number: 15902039 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Streptococcus pneumoniae TIGR4 # 61 276 215 421 441 75 24.0 2e-13 MTVLFEVSLSLLILQIIFSVFAYLTTVKIQKDLLTKREQKEQQLQLELANADRKAKEAEN KELILKQQQLSSEMKQLREYSSYLDKNEDDLRRFKHDYQNVLNGLKVSAQEGNSKEVVKI LDHYTETQFNKKALRKYKGVNHIHENNLKSIAIAKLSKLYSLGLDYSFDCEHDISRIPDS VNILDLVRIIGITFDNAAEESQALIKETGNSNSARIDAMYYQENGDFEFEIRNRVRKSGV ATDKISQKNYTTKKHHMGLGLANVKEITHKYEDSMIVNYYVDDGWFTFDLTILPDSESGT EK >gi|256541377|gb|ACPV01000097.1| GENE 2 1057 - 1881 648 274 aa, chain + ## HITS:1 COG:SA1844 KEGG:ns NR:ns ## COG: SA1844 COG3279 # Protein_GI_number: 15927614 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Staphylococcus aureus N315 # 5 233 3 224 238 95 31.0 9e-20 MQYPVFICDDDQNQIEQTKKILGAAEMILSDDEEIEFSIASATDYMGAIDYLKKHKLDGG IYFLDVELGGDTEEDTGFDLAALIKKRDERAQIIFVTSHADLSLITFRRRLGPIDYIVKT SDLDKFRQMMVKTVEVAIYNLHKFNYMKKMTFSYKIGRQTRNVNIDDIIYISTTITPHKL LMILTTGEMQLLGSINQYAKENPMLEKINQSCLVNPKNIESIDLKQHRVSFVNGDVEDFS RSSVKMMKDFLARYNYKTEKLAKQKEINDGHVNV >gi|256541377|gb|ACPV01000097.1| GENE 3 1862 - 2294 345 144 aa, chain + ## HITS:1 COG:SP0042 KEGG:ns NR:ns ## COG: SP0042 COG2274 # Protein_GI_number: 15899987 # Func_class: V Defense mechanisms # Function: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain # Organism: Streptococcus pneumoniae TIGR4 # 7 142 5 140 717 159 52.0 2e-39 MGMLTYKSIYVPQIDETDCGAACLAMILKNYHSQVSIAHLRHIAKTNTEGTTALGLVKTA EKFNMDVQAVKADMSLFNMKDIQYPFIVHVIKDGGLLHYYVVLKSTKRKIIVADPDPTSG IKKMSKKAFEKEWTGITLFMVPKA Prediction of potential genes in microbial genomes Time: Wed May 25 05:43:17 2011 Seq name: gi|256541376|gb|ACPV01000098.1| Lactobacillus crispatus 125-2-CHN cont1.98, whole genome shotgun sequence Length of sequence - 3746 bp Number of predicted genes - 6, with homology - 5 Number of transcription units - 3, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 44 - 1720 262 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 2 1 Op 2 . + CDS 1731 - 2369 357 ## LJ0768 lactacin F transporter auxillary protein + Term 2374 - 2424 4.5 + Prom 2401 - 2460 3.4 3 2 Op 1 . + CDS 2536 - 2733 291 ## gi|256844067|ref|ZP_05549554.1| predicted protein 4 2 Op 2 . + CDS 2755 - 3030 201 ## LCRIS_01793 hypothetical protein + Term 3066 - 3113 5.5 + Prom 3114 - 3173 5.5 5 3 Op 1 . + CDS 3333 - 3479 69 ## 6 3 Op 2 . + CDS 3489 - 3635 89 ## gi|256844069|ref|ZP_05549556.1| conserved hypothetical protein Predicted protein(s) >gi|256541376|gb|ACPV01000098.1| GENE 1 44 - 1720 262 558 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 317 547 123 353 398 105 32 5e-23 MFKQKKLVRNIILAALLMTLISICSSYFVQGLIDTYIPNGTFTTLSVLAIGLLIAYVFNS IFSYGQQFLLNVLGQRLSIDLNLQYIKHIFELPMEFFTTRKTGEITSRFSDASRIIDALA STVISLFLDLSIVILMGIILAVQNMTLFLITLASLPLYAIVILGFSKRFERLNNDQMESN AVVSSSIIEDIQGIETIKALNSEQVRYRKIDSQFVDYLKKAFKYSKTEAFQTALKTFIRL SLNVIILWVGASVVMHNQMSIGELMAFNALLSYFIDPLQNIINLQPTLQAANVAQNRLNE VYLVQSEFKGKTSVNDSHDLNGDINFSHVDYRYGYGEDVLKDINLTIKDNEKLTIVGMSG SGKSTMVKLLVDFFSPTKGKVTFNGHSTRSINKHVLRSYVNYVPQTPYIFAGTIKENLLL GSRKNITEKEIGEACQIAEIKNDIEKLPLGFNTQLDENAKILSGGQKQRLTIARALLSPA KVLIFDEATSGLDTITEKKVVDNLIRLKNKTVIFIAHRLAIAERTDNIVVLNQGQIVEQG NHSELMAKHGYYYDLVKS >gi|256541376|gb|ACPV01000098.1| GENE 2 1731 - 2369 357 212 aa, chain + ## HITS:1 COG:no KEGG:LJ0768 NR:ns ## KEGG: LJ0768 # Name: not_defined # Def: lactacin F transporter auxillary protein # Organism: L.johnsonii # Pathway: not_defined # 1 212 1 197 197 154 39.0 2e-36 MNDQDLESSKFYSYNFRNFSTMIILPAFIFVILLFIGSFFAVHENVMNSMGVITPDRVVT LENKEYKEGQKLSKGISVTLADGKKGMLENNVIIHLDNKNSVAMPDIRDRKKLRVITYVP SSEVAVLDKGQRMKFNIENKQGTSEILNGKITNIGTYPVQQKKISMFEVETMVKTTKSER NFLRYGMQGKVSIITGRASYFNYIRSRVLNSK >gi|256541376|gb|ACPV01000098.1| GENE 3 2536 - 2733 291 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256844067|ref|ZP_05549554.1| ## NR: gi|256844067|ref|ZP_05549554.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 65 1 65 65 120 100.0 2e-26 MKNFKVVNNIELNRVVGGKIIRLTPYMLYNTKTHKTIPDYGAIWGKAGQTVANGWLQYGP WGSRG >gi|256541376|gb|ACPV01000098.1| GENE 4 2755 - 3030 201 91 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01793 NR:ns ## KEGG: LCRIS_01793 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 3 91 2 90 90 93 57.0 3e-18 MQDNGQNLKKILEELRQETVNDRDATKLINQGLSKLTQGVNFDKVVFELNRDLNNYSLVH GFKLPQALIRLKIMLNENPDKWKFAGLTGSI >gi|256541376|gb|ACPV01000098.1| GENE 5 3333 - 3479 69 48 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MENTVGFEKLSSNELVSVVGGSKGWNKFWKSEGKYWRGFKEGLCKYAR >gi|256541376|gb|ACPV01000098.1| GENE 6 3489 - 3635 89 48 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256844069|ref|ZP_05549556.1| ## NR: gi|256844069|ref|ZP_05549556.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] # 1 48 1 48 48 90 100.0 4e-17 MKKFESLKDENLLECVGGKRGYNCYKFGKDVGRTVKLVAPIVIPLFCC Prediction of potential genes in microbial genomes Time: Wed May 25 05:43:46 2011 Seq name: gi|256541375|gb|ACPV01000099.1| Lactobacillus crispatus 125-2-CHN cont1.99, whole genome shotgun sequence Length of sequence - 39028 bp Number of predicted genes - 43, with homology - 43 Number of transcription units - 19, operones - 12 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 129 - 188 4.3 1 1 Op 1 . + CDS 337 - 555 228 ## gi|256844070|ref|ZP_05549557.1| predicted protein 2 1 Op 2 . + CDS 559 - 834 313 ## gi|256844071|ref|ZP_05549558.1| predicted protein + Term 858 - 894 4.3 3 2 Op 1 . - CDS 948 - 1355 409 ## COG3654 Prophage maintenance system killer protein 4 2 Op 2 . - CDS 1359 - 1574 289 ## LCRIS_01791 hypothetical protein - Prom 1607 - 1666 6.7 - Term 1660 - 1701 3.3 5 3 Tu 1 . - CDS 1726 - 3522 2184 ## COG1164 Oligoendopeptidase F - Prom 3549 - 3608 11.2 + Prom 3548 - 3607 7.8 6 4 Op 1 . + CDS 3690 - 4928 1037 ## COG1316 Transcriptional regulator + Term 4931 - 4970 1.1 7 4 Op 2 . + CDS 4993 - 5682 653 ## COG1811 Uncharacterized membrane protein, possible Na+ channel or pump + Term 5730 - 5775 1.4 8 5 Op 1 . - CDS 5679 - 6062 214 ## LCRIS_01786 hypothetical protein 9 5 Op 2 . - CDS 6076 - 6237 186 ## LCRIS_01786 hypothetical protein - Prom 6331 - 6390 4.6 10 6 Tu 1 . - CDS 6552 - 7103 204 ## PROTEIN SUPPORTED gi|28379311|ref|NP_786203.1| ribosomal protein acetylating enzyme - Prom 7132 - 7191 5.0 + Prom 7094 - 7153 6.8 11 7 Op 1 . + CDS 7248 - 7625 444 ## LCRIS_01784 hypothetical protein 12 7 Op 2 . + CDS 7639 - 9180 1433 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 13 7 Op 3 12/0.000 + CDS 9191 - 9961 801 ## COG2966 Uncharacterized conserved protein 14 7 Op 4 . + CDS 9964 - 10449 353 ## COG3610 Uncharacterized conserved protein + Term 10616 - 10649 1.1 - Term 10604 - 10638 4.3 15 8 Tu 1 . - CDS 10646 - 11359 335 ## COG4990 Uncharacterized protein conserved in bacteria - Prom 11380 - 11439 7.8 + Prom 11310 - 11369 11.0 16 9 Tu 1 . + CDS 11476 - 12006 460 ## LCRIS_01779 hypothetical protein + Term 12012 - 12049 3.3 - Term 11992 - 12045 8.1 17 10 Op 1 4/0.000 - CDS 12046 - 12981 1126 ## COG0208 Ribonucleotide reductase, beta subunit 18 10 Op 2 . - CDS 12984 - 13430 354 ## COG1780 Protein involved in ribonucleotide reduction - Prom 13502 - 13561 5.7 + Prom 13478 - 13537 7.4 19 11 Op 1 . + CDS 13723 - 14874 846 ## COG0675 Transposase and inactivated derivatives + Term 15003 - 15046 2.9 20 11 Op 2 . + CDS 15062 - 15685 479 ## LCRIS_01775 hypothetical protein + Term 15697 - 15749 9.2 - Term 15685 - 15736 8.5 21 12 Op 1 . - CDS 15740 - 17248 984 ## LCRIS_01774 hypothetical protein - Prom 17271 - 17330 5.7 - Term 17282 - 17320 0.1 22 12 Op 2 . - CDS 17334 - 17636 518 ## LCRIS_01773 hypothetical protein - Prom 17685 - 17744 10.8 + Prom 17644 - 17703 4.5 23 13 Tu 1 . + CDS 17733 - 18275 435 ## COG0194 Guanylate kinase + Prom 18327 - 18386 5.7 24 14 Op 1 7/0.000 + CDS 18446 - 18994 191 ## PROTEIN SUPPORTED gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 + Term 19032 - 19071 6.1 + Prom 19082 - 19141 7.4 25 14 Op 2 7/0.000 + CDS 19263 - 20006 894 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) + Term 20020 - 20058 4.6 + Prom 20047 - 20106 5.2 26 14 Op 3 . + CDS 20176 - 21069 806 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) + Term 21093 - 21127 2.9 + Prom 21364 - 21423 6.9 27 15 Tu 1 . + CDS 21450 - 21869 311 ## LJ1563 hypothetical protein + Term 21952 - 21984 0.9 - Term 22187 - 22231 9.7 28 16 Op 1 . - CDS 22251 - 23279 891 ## LCRIS_01767 hypothetical protein 29 16 Op 2 . - CDS 23297 - 24562 581 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 - Prom 24665 - 24724 8.4 + Prom 24627 - 24686 6.0 30 17 Tu 1 . + CDS 24717 - 24911 192 ## gi|227878209|ref|ZP_03996183.1| hypothetical protein HMPREF0506_1184 + Prom 25671 - 25730 5.2 31 18 Op 1 . + CDS 25860 - 26912 1111 ## COG1316 Transcriptional regulator 32 18 Op 2 5/0.000 + CDS 26935 - 27813 1137 ## COG3944 Capsular polysaccharide biosynthesis protein 33 18 Op 3 3/0.000 + CDS 27828 - 28613 980 ## COG0489 ATPases involved in chromosome partitioning 34 18 Op 4 . + CDS 28613 - 29383 790 ## COG4464 Capsular polysaccharide biosynthesis protein + Prom 29385 - 29444 3.3 35 19 Op 1 . + CDS 29493 - 30143 457 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis 36 19 Op 2 . + CDS 30201 - 30932 571 ## lhv_1802 galactosyl transferase 37 19 Op 3 . + CDS 30951 - 32183 481 ## gi|256844108|ref|ZP_05549595.1| conserved hypothetical protein 38 19 Op 4 6/0.000 + CDS 32189 - 33079 378 ## COG1216 Predicted glycosyltransferases 39 19 Op 5 26/0.000 + CDS 33101 - 34219 391 ## COG0438 Glycosyltransferase 40 19 Op 6 1/0.000 + CDS 34227 - 35231 275 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Prom 35245 - 35304 4.0 41 19 Op 7 1/0.000 + CDS 35504 - 36619 1288 ## COG0562 UDP-galactopyranose mutase 42 19 Op 8 . + CDS 36627 - 38054 1096 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid + Term 38060 - 38093 3.1 43 19 Op 9 . + CDS 38100 - 38843 209 ## gi|256844115|ref|ZP_05549602.1| predicted protein Predicted protein(s) >gi|256541375|gb|ACPV01000099.1| GENE 1 337 - 555 228 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256844070|ref|ZP_05549557.1| ## NR: gi|256844070|ref|ZP_05549557.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 72 4 75 75 137 100.0 2e-31 MVKFQELKENQLSQVLGGTHHKRGGGKYHYYGNGVYCNRYYCHDNLAQMWDSVGRIMYTG WQKDGPFAHPLV >gi|256541375|gb|ACPV01000099.1| GENE 2 559 - 834 313 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256844071|ref|ZP_05549558.1| ## NR: gi|256844071|ref|ZP_05549558.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 91 1 91 91 163 100.0 4e-39 MIKKDETLKLKNELEKVRFSKDVIDNPNLVRILDRTIDQAENNDSALYIGSRLYYQLQQY EFAKNFNAPKVIHDLQATLAGYAGQSSSSMT >gi|256541375|gb|ACPV01000099.1| GENE 3 948 - 1355 409 135 aa, chain - ## HITS:1 COG:SP0889 KEGG:ns NR:ns ## COG: SP0889 COG3654 # Protein_GI_number: 15900772 # Func_class: R General function prediction only # Function: Prophage maintenance system killer protein # Organism: Streptococcus pneumoniae TIGR4 # 5 112 4 110 137 75 40.0 3e-14 MKINYLTEKDILVINARVIQREGATGQKPHVRDAEALHFLVVQPKQTSFGQELYPSFAEK AGILLIKLVKKHVFEDANKRTTAIAFLLFLRRNSYELTCDWQDLANQILKIAQIDDNELN YQEIYQWVNQVIHEN >gi|256541375|gb|ACPV01000099.1| GENE 4 1359 - 1574 289 71 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01791 NR:ns ## KEGG: LCRIS_01791 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 71 1 71 71 111 100.0 1e-23 MAETLYKKVVKNGSSLAINIPAKEVKEQNLKVGDIVEVKIKKSDRPNSENLKEIDGLISD YWDMLEYLKDK >gi|256541375|gb|ACPV01000099.1| GENE 5 1726 - 3522 2184 598 aa, chain - ## HITS:1 COG:SP0979 KEGG:ns NR:ns ## COG: SP0979 COG1164 # Protein_GI_number: 15900856 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Streptococcus pneumoniae TIGR4 # 6 598 5 596 600 572 52.0 1e-163 MAIPNRNEVPEELKWDLTRIFKNDEEWEQAYAAAQEKIDQLGELKGTLAKSGKDLYEGLT KILAVKREVENIYVYATMSSDVDTANSHYLGYVSRVQSLANQFEAATSFINPEILSIPSD KLAEFKQAEPRLKNYAHYLEMITNKRPHTLPAEQEKLIADAGDALGVSENTFNVLTNSDM EYGYVQDDDGNMEQLSDGLYSLLIQSQNRDVRKGAFDTLYATYSQFQNSLASTLSGVVKK HNYNAKAHKYDSARQAALAENGVPEAVYDTLIQEVDSHLDLLHRYVALRKKILGLKDLQM WDMYVPLTGKPSLSYNFEEAKEVAKKALKPLGEDYLKHVDYIFNNRVIDPIESKNKVTGA YSGGAYDTDPYELLNWEDNIDSLYTLVHETGHSVHSWYTRNTQPYVYGDYPIFVAEIAST TNENILTEYFLDHITDPKTRAFILNYYLDSFKGTLFRQTQFAVFEQFLHEADANGEPLTA DTLDDVYGQINQHYYGDSVEPGGDIALEWSRIPHFYYNFYVYQYATGFAAATALANKVVH GTPAERDAYLGFLKAGSSDYPTEIMKRAGVDMTKPDYLEDAFKTFEKRLNEFESLIEK >gi|256541375|gb|ACPV01000099.1| GENE 6 3690 - 4928 1037 412 aa, chain + ## HITS:1 COG:BS_lytR KEGG:ns NR:ns ## COG: BS_lytR COG1316 # Protein_GI_number: 16080618 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 58 333 38 304 306 196 38.0 8e-50 MDQNPKRREDYRARRSSLNLHRNRAFAADAPALKPGNFLARLVGVVALLAVCFGVAWAAH MYFTVHSVIDSKNGGNTATSAKIVNRQPISILVLGVDQGIEGRHDRGNSDTMILATANPQ KNSATMTSIPRDTLADIKGDPGDKYFMFRVNSAYEIGGHESSMKTVSSMLNVPINYYLEV NMKALKSLVNAVGGVDVNVPFDFSYDWCDFHKGKQHLNGRHAVAYVRMRKEDPRGDYGRQ MRQRQVIEAIAHKAMSVNTLSNYRKLVDVFNKYVKTNLTFNDMLSLALNYRGCMKNMKSS YIQGHDAWIDGASIQVASTKELQKTSDRIRKNLNLSTQTLNNEETRQNELNDQNNHIKWD DPQAFTNYQIYDQNQDKPASGSNSGYGEGTGTGSSSSSSSSSSSSSGWHFHW >gi|256541375|gb|ACPV01000099.1| GENE 7 4993 - 5682 653 229 aa, chain + ## HITS:1 COG:BS_ydfK KEGG:ns NR:ns ## COG: BS_ydfK COG1811 # Protein_GI_number: 16077612 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, possible Na+ channel or pump # Organism: Bacillus subtilis # 1 222 1 222 229 190 51.0 2e-48 MIGTIVNTLALLVGTTIGCFLKKGINKRFEDVLFIAMGLAALGIGWENVTNNMPKSHYPV LFIVSLALGGLCGTAWDISGHFDRLVEKTGKSNLGKGLATEILLCCIGALSIVGPVIAAV KGDYTMLFTNVTLDFVTSMVFGASFGWGMLVVAPVLFCWQGSIYLVAKFLSASFFTGPLV TEISIVGGFLIACSGLALLKIRDVKTLNFLPSLLVPIIFFIIKDLTGWF >gi|256541375|gb|ACPV01000099.1| GENE 8 5679 - 6062 214 127 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01786 NR:ns ## KEGG: LCRIS_01786 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 127 59 180 180 219 94.0 3e-56 MHLCGVTYIDGPRKFFNDALDQKIQIKKILIKKDGSTFQKLQIMNQFQEMLGPHLRLTGP SNFTYLKFDHSIRTNKSILALALLNNQNYMIPISLLNLKFIHPFPNGEKIIKIESRDLKT GKITILN >gi|256541375|gb|ACPV01000099.1| GENE 9 6076 - 6237 186 53 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01786 NR:ns ## KEGG: LCRIS_01786 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 48 1 48 180 86 100.0 3e-16 MNRNLFKNANLKEIGQLRRYMSIIYDNADFYSKHFVNKTIIYTTKNKKNRTYC >gi|256541375|gb|ACPV01000099.1| GENE 10 6552 - 7103 204 183 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|28379311|ref|NP_786203.1| ribosomal protein acetylating enzyme [Lactobacillus plantarum WCFS1] # 26 163 18 155 187 83 33 2e-15 MSQEKQKYYFFPLRFQQQDLKIELVLPQITQAEALYQAVVRDRKQLGQWLAWADQMHSAN DEAKFIKQIQTKMSQQTMLVLTILVNGEPSGMIDLHKLVPNKKAEIGYWLASKYQGRGIV TKSVTALCQYAFSELNLQYIDLLVAVGNDKSSNVAKRCGFKLMGIEPKLINGYDGQIFRL IRR >gi|256541375|gb|ACPV01000099.1| GENE 11 7248 - 7625 444 125 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01784 NR:ns ## KEGG: LCRIS_01784 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 125 1 125 125 218 91.0 7e-56 MQKEEKESIFPVIYGVLSAVISFIAVIFICLHSFRMNLQLAIITASVFAIFFFGLSYFRG HASVEIKRIVYKYKLTDQELAKITGLKASDFPIYHDRLQLILPKRYWPRVLDALQNYEKE HESAK >gi|256541375|gb|ACPV01000099.1| GENE 12 7639 - 9180 1433 513 aa, chain + ## HITS:1 COG:SP0770 KEGG:ns NR:ns ## COG: SP0770 COG0488 # Protein_GI_number: 15900664 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 512 1 512 513 430 44.0 1e-120 MSLLTVKDLSQSFIDKTLYEDANFVLNKEDHMGVTGQNGVGKSTLIKILTGEILPDDGQV TWQNKIDVGYLDQYAKLAPGVTIRGFLRTAFDQLFQKEKELNDLYAKYAENGDEALLEKA GKVQTYLEENNFYDIDTEIEQVASGLGLADLGYDHDVSKLSGGQRSKIILAKLLLQSPDV LVLDEPTNYLDVSHIDWLVDYLNNFAGAFIVVSHDYDFLGRITNCIIDIDFGTITRYTGT LKQALRQKAANRETYLKAYANQQRKIAKTEAYIRKNKAGTRAKSAKSREKQLARMDVLTP PKNNRKARFEFPYVATASNLLLQTQDLVIGYDHALVKSAFNFSVGGDEKVAITGFNGIGK TTLLKTLLGQLKPIYGSYELSVTAKLAYFKQDLTWPNSNMTPLQYLQEEFERKKPKELRQ ALARMGLTAQQAMSPLKELSGGEQEKVKLAKMQFEPANLLFLDEPTNHLDNDTKDALRKA IVNFPGGVIIVSHERDFFRGDWVDKTIDIETMN >gi|256541375|gb|ACPV01000099.1| GENE 13 9191 - 9961 801 256 aa, chain + ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 13 253 9 248 250 187 45.0 2e-47 MSEKRDVQFYQEVMDICLTAGRLMIEGGSEMYRVEDTMLRIARNAGIDDPRVFATPTCVF MSLDGGKLSQMKQIRDRNINLELVDRVNDLSRQFAVKKITLSELKEKIALVSQAPTFPMW LQVLGAAVLSATLMVLFMDNYDWVDFPGAALVGAVGFWSYYEFKKYTKIRFLSELIAAMV MGILAVLFNHFNPQMITDNILIGALMTLVPGLAITNALRDLFMGDLLSGIMRMCEAVLTA LALGGGVALVLKFIGV >gi|256541375|gb|ACPV01000099.1| GENE 14 9964 - 10449 353 161 aa, chain + ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 148 1 148 152 134 48.0 5e-32 MPLWLEIIINVIFSYVASVGFALTINVPHRDLHLSGVSGTVGWMAYWTCFNLGFGRMISN LIGAFLIGILGLCFARIKKSPVTVFNIPALVPLVPGVPAYQAVRALVVGDYSQGENLLLR VAIVTGAIALGFMLSTMCTEVFYKFKYRHFKSARLYIKHKK >gi|256541375|gb|ACPV01000099.1| GENE 15 10646 - 11359 335 237 aa, chain - ## HITS:1 COG:BS_yvpB KEGG:ns NR:ns ## COG: BS_yvpB COG4990 # Protein_GI_number: 16080547 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 49 237 62 249 250 142 41.0 6e-34 MKKQKFDLKYLFLLIPITLILIIGLIYLFNKNKIDNEINWMTMKEEQRLNVPLENQLPDL PNGCEVTSLSMLLNYYDIKVNKYDLADNIAHVDSFTDNGKYRGNPNQGFVGHMSVANAGW CVYHGPLFDVARKYTSHIEDASGSNFLAILKLISDGHPVLIITTTTFNHVNNMQTWETNT GKVNVTPSSHACVITGYNKQKKLVYVNNPYGIKNQPVNWHNLELSYDQQGRQALYIK >gi|256541375|gb|ACPV01000099.1| GENE 16 11476 - 12006 460 176 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01779 NR:ns ## KEGG: LCRIS_01779 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 152 1 152 176 247 99.0 1e-64 MEINLKDLNEKIENQDYIQDLETVKYADISKSKSKIKPYAEKMVKEVIAAFKHNSLIQTQ LAVTGQRPATFALETNIINLPYSNYKRVANFFEEGKEYPLNVYFETRSEYVNVSGFRIDQ LASEVEIEQDPAKIVDQLVEAIIEKLTTIREYKKPEKKEAEKKTATKKATKKTTKK >gi|256541375|gb|ACPV01000099.1| GENE 17 12046 - 12981 1126 311 aa, chain - ## HITS:1 COG:SPy1378 KEGG:ns NR:ns ## COG: SPy1378 COG0208 # Protein_GI_number: 15675308 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 5 296 4 295 319 239 40.0 5e-63 MTEKYYKAINWNDMEDRVDKSAWSRLNDIIWEPRNVPVREDKKEFLQLDKPVQDALLHAF GALSFSSGLQMKNGLEQIKVDAITPEEAAVLNALQYLESIANKGYSYVINELTDSNIAKD VINWADDNPYLQKKIRILNKIYQGGDALQKKVANVILETALYHSAFYAPLYLFGQGKMVR TAEIVKLALRGTSFSGIYPGYKFRLGYQKLGKTEQAELKEWIDNLYDVLIDNEKKHIELM YKGTDWIDDVTHYLYYSVNKAYLNLGFSAKYPDTSDSINPIIEKGVIKNAVLEDFFFYTN DHSLTKFKEIK >gi|256541375|gb|ACPV01000099.1| GENE 18 12984 - 13430 354 148 aa, chain - ## HITS:1 COG:L4702 KEGG:ns NR:ns ## COG: L4702 COG1780 # Protein_GI_number: 15672958 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Lactococcus lactis # 4 124 3 131 140 95 40.0 3e-20 MVAIAFYSITGQTERFIKKTQLSAHQIDDANPKYDMGKSYILIVPSYQDFMMDSVVDFLT YKDNKKNIIGIIGCGNRNFNDLFAQTAKKITATLKVHILYLLEFSGTNQDVKNVRKIVHD LSAGESTKQVQKPKELRGNISFLSDFRD >gi|256541375|gb|ACPV01000099.1| GENE 19 13723 - 14874 846 383 aa, chain + ## HITS:1 COG:TM1044 KEGG:ns NR:ns ## COG: TM1044 COG0675 # Protein_GI_number: 15643802 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Thermotoga maritima # 1 379 4 370 405 127 28.0 3e-29 MIKTQVVELRPNKIMQRELERLCNYRRYCWNLALATWQDMYEARTLDKDNNPSPNEHRVR DELVNNKADWQFALSARCLQLAVKDLANAWKNFFDKTQPDWGKPHFKSKKAPRQGFKTDR AKIINGKLRLDKPRGIKSWFDIPAYEALKMEEVKIASIFRERGHYYAALSYEEEAGLKAK TGKKTAIDVNVGHFNYTEGKINVLPAKLQKLYKRIKHYQRVLSKKRRVNGKSASQSNNYL QVRTKLQRDYRKAANIQNDLLQKFTTELVNNYDQIVIEDLNVKQMMMTHVASKGMQRSLF GKFRQVLTYKCEWYGKELILADKTYPSTQRCANCGYVKTGADKITLQGNKKHGTKHNEYI CYECGYSNDRDDNAVLNLLALTK >gi|256541375|gb|ACPV01000099.1| GENE 20 15062 - 15685 479 207 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01775 NR:ns ## KEGG: LCRIS_01775 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 207 1 207 207 396 100.0 1e-109 MFSWNIIGILIWVAIILYLVFIVQNIRQRRIKMIIKQHKRFSWPNMALNIVEIVVLLLAA GWMFNQTFMDNPDLEDANRITSSVKYEPLIMRTGAGNSSYVTINSAKKRYGSQTYTFYRD GSKVTIGSDYASIAYGNTALDVNAEKIPYVKKELAKMDKKYQRAYVAIYTAKYKRNWQNG IGMHAGHLATRYYLIRVPDSSFIKQEK >gi|256541375|gb|ACPV01000099.1| GENE 21 15740 - 17248 984 502 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01774 NR:ns ## KEGG: LCRIS_01774 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 502 1 502 502 913 99.0 0 MKEKKRTVLFWFILIQPFLDLYWFYNGKLAEVLPFTLPTIIRILAVFVIFCMFFSQKQNW QKLGQDKWLILYLALLILYSIIHLIHVKNFNSINPNDYNYSTVSEIFYLIRMLLPLMVIF FTKELNFSQEQFRHVIEGISGLFSFTIVITNLFVISLRSYETGPISANIFEWFVNPNIGY SHMASKGFFNFANMVSAVLFMLVPLMLYFMFSRFNWKIVTLNVVQALAMIELGTKVALIG LIGGVIISILLYVFHLFIVKDVNKNGKAIIVALLIEAGTFAIIPFGPAIQRYNYEKYLAQ QSDDSLTQAKRELNAGLKKYPQGKQRKEFLTNFIGNHYQDYALNKKFVFKSYPYKYDPEF WLKIMNEPGTARMQNRHVEKAMLDQVVKTNNNRLDKFLGISYTRETNIFNLERDFTSQIY SLGWIGMLLFIGPYVIILLYALIKWLMNKEKRTYLISSMLLSIAFMIFAAFSSGNVMDFL TASFILAFVEGSLLASVTRKEN >gi|256541375|gb|ACPV01000099.1| GENE 22 17334 - 17636 518 100 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01773 NR:ns ## KEGG: LCRIS_01773 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 100 1 100 100 117 98.0 2e-25 MKKADVKVGAIVGAKSEEELKKPFQGKVEKIYENSALLAITSYDPVDTTAISDLNNKIVV NFKNLKTARAAKNSKTASTNEVKIEKIAKKNDDKKEADKK >gi|256541375|gb|ACPV01000099.1| GENE 23 17733 - 18275 435 180 aa, chain + ## HITS:1 COG:Cj1177c KEGG:ns NR:ns ## COG: Cj1177c COG0194 # Protein_GI_number: 15792501 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Campylobacter jejuni # 4 176 7 184 207 85 31.0 4e-17 MKKIILIAGPSGAGKTTVSEYLTEKYGIPRVLTHTTRPMRSGEEQNVSYHFETDETFAQL HFFEHIKYGSYQYGSSREALNLAWKKSDLVSLIVDIKGIYSYIKQLGDKAYFLYVTTSTK EELKQRLLKRGDDPSKIKERLSGSELNALPEDLKQYAHILVNDNLTETKNALDALVAKLR >gi|256541375|gb|ACPV01000099.1| GENE 24 18446 - 18994 191 182 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 [Haemophilus parasuis 29755] # 4 173 10 163 175 78 33 7e-14 MNFRRTLVKYTAALSVFFAGISMINVPAVHADDVSSTTINTNNSISDLETTNPDSSSVKK ESATTKERNAVVKLVKKQIGKPYIYGAAGPSGFDCSGLTSYVYKNAINKILPRTTYGQIT LGKTISVSTKKLKKGDLLFWGNYHVGIYVGNGKFVHAPAPGQNVKQQTLASFYPSSAKRV ID >gi|256541375|gb|ACPV01000099.1| GENE 25 19263 - 20006 894 247 aa, chain + ## HITS:1 COG:CAC2943_2 KEGG:ns NR:ns ## COG: CAC2943_2 COG0791 # Protein_GI_number: 15896196 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Clostridium acetobutylicum # 127 247 21 136 136 112 50.0 9e-25 MNIKSNFVKVTAAAALTLTGVAAVNVIKPDSTNATVQAATTKVKINYIAGYGINIWDNYN GGHFTGQRAQHGTTWNVFDTKTDKKGRTWYQIGDNQWILAQYTVDASSDKAQAVKKAKKA KKSVQATGDASAVITLASAQLGKSYVWGGTGTNGFDCSGLVQYVYSNAAGVKLGRTTYDQ VKQGSTVSMDNLQPGDLLFWGSASAPYHVGIYVGNNQYIHAATPGQGVIKQTLSSYFYPS VAKRVLN >gi|256541375|gb|ACPV01000099.1| GENE 26 20176 - 21069 806 297 aa, chain + ## HITS:1 COG:CAC2943_2 KEGG:ns NR:ns ## COG: CAC2943_2 COG0791 # Protein_GI_number: 15896196 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Clostridium acetobutylicum # 173 297 16 135 136 121 51.0 2e-27 MKHNFFKVGAAAALTVTGVSAITSMKTVRAANFTAIKQVKISYLPGKSLNIWTNYENGQF MGYRAKDGTVWNVAETALDKKGNLWYKVGTREWIEARYTVDVTAGEKAEVSQAPTVKKTE AKQTKTTVNKKTAAVATKTATQKKAEKIAKVKKAKQIVNTAIKKTSQNTNQTSSTQATSK AASIVALAKQQIGKNYVWGAEGPDSFDCSGLVQYVYQKAAGVNLPRTTYDQVKVGQTVSL NNLQPGDLVFWGSTTAPYHVAIYVGNNQYVNAATPEQGTILQTVSSYFTPSIAKRVL >gi|256541375|gb|ACPV01000099.1| GENE 27 21450 - 21869 311 139 aa, chain + ## HITS:1 COG:no KEGG:LJ1563 NR:ns ## KEGG: LJ1563 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 127 1 125 153 130 51.0 2e-29 MAKRHQYLWCLVELPNGKREWYCISKVLRKALLWEKNYLHNRYWRNTLIGSYLNVARTRY HHDRAIITVGRVIRVKILYYPTQDWHWTRNQFIAAGQLDNFATAYNYMKHNYAWYNKLLI HHALRHWRRISTSKHCNKF >gi|256541375|gb|ACPV01000099.1| GENE 28 22251 - 23279 891 342 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01767 NR:ns ## KEGG: LCRIS_01767 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 24 342 1 319 319 594 96.0 1e-168 MKKHNLLFLFALTFLLVPTNTPVMAAKYSASESKKVRTFQKSYHRLSQKNYNQTTLFTVQ PNFGIPFSAGVLDPDYIKTSMAYVNYYRSLVGLPDDANYANDNVNAQLGAAALASVNAEQ NLRAHGLQGYVKPGYISDTDWDTAENTTLGNINFSESTSGTTAGEIVTDLIREDNNIAGN GNIGHRGMILSTRATRMGIGAAYGTENNVLYSVEHGLFADDILRQPVKSRIVYPAAGVFP YELVGGKTPWSYSTTERISGQPKIYITDLTTKKKRQATQVRNFGTALYGDGYTTTITYRP GKTKLISTHKYRVQIGKHYSYSFKFFRQNSTLKNKQIVKHRK >gi|256541375|gb|ACPV01000099.1| GENE 29 23297 - 24562 581 421 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 39 418 44 424 425 228 37 4e-59 MIDNQPKKTKAYIAGVNLNDQNFDYYMTELANLTEANNMEVVGQSFQNAESIVAGTYFGV GKINEIRTMAQGLKAKVLVLNDKLTPVQIRNLEKLTKMRVIDRTELILEIFASRARTKQA KLQVQLARLQYELPRLHPSENNLDQQRGGGFANRGAGESKLELNRRTIGKQISAIKKELK AVAGQEEIKAARRNQSRIPKVALVGYTNAGKSTTMNGLLREFSKEGADKEVFVKNMLFAT LDTSVRRIDLKDNFSFILSDTVGFISKLPHNLVESFKATLQETRDADLLINVVDASDPNM VQMIRTTQNVLDEIGVKEIPMITAYNKADKTDRNYPQIEGDDILYSAIDPKSIKLLANLI TKRVFANYKKFDLILPLSAGKELAYLHDRAQVLREDYQDDGVHIEANIAPDDQGRFRQYL A >gi|256541375|gb|ACPV01000099.1| GENE 30 24717 - 24911 192 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878209|ref|ZP_03996183.1| ## NR: gi|227878209|ref|ZP_03996183.1| hypothetical protein HMPREF0506_1184 [Lactobacillus crispatus JV-V01] # 1 64 7 70 70 114 100.0 3e-24 MFTDIQLVFKKLSKNVAMPYVKLLNKLIYSSNSNAEEKAIASDWQRIGDDLRKGIISYGR SKAK >gi|256541375|gb|ACPV01000099.1| GENE 31 25860 - 26912 1111 350 aa, chain + ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 32 334 10 303 304 167 30.0 4e-41 MENNAESSNKPIHRHRHHHHRRHRKFWRGFWIIIGVIIVVGLFVCGMIYKNLRDTTQNMY TPVAKTTKSNKGRTLDNLLNEKKPINILLLGTDTGAMGRHWKGRTDTIMMMSINPKTNST SIVSIPRDSNAIFPDYPQYGVTKINSAYTLGGVSETIKTLDKYYSVPIDGYIMINMGGLK KAIDQVGGIDVTSPLTFNNMGYSFVKGQTYHMNGKKALAFAQLRHGDPRQDYGRQERDRL VIMALLKKSVSPSTLLNSSFLNSISSEMQTDLTMNQMYKIAMDYRKATNNLSQDHAQGVS KETQNPKFGTMEIEVVSREERQRVSDKIRTALELPHVKVAANKASYIMNR >gi|256541375|gb|ACPV01000099.1| GENE 32 26935 - 27813 1137 292 aa, chain + ## HITS:1 COG:SA2457 KEGG:ns NR:ns ## COG: SA2457 COG3944 # Protein_GI_number: 15928250 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Staphylococcus aureus N315 # 13 267 6 220 220 86 26.0 4e-17 MEQEQKQTENTIDLTQLLQICRRHIWALIIWSVGLALVGWGVANFIISPKYTSNAQILVN QKANKNDPNAAYNTQQANMQMVTTYKDIVTSHVILQDASNRLANPVRVVKKAKPAKYKTN AEGRRVLVRKAQPEVVERSGKSYSVSTSELAKSVSVNTQQQSQVFSISATADTPEKAKVE ANAVARSFRDQIPNIMNINNVTIVAPATDGNQSSPNVKLFTLAGFVIGLVLSFAVVLIRE MSDTTVKDDAFLTDNLGLVDLGQVSHFHVSSSFVIRKKNKNSNGPKRRSRRV >gi|256541375|gb|ACPV01000099.1| GENE 33 27828 - 28613 980 261 aa, chain + ## HITS:1 COG:BH3668 KEGG:ns NR:ns ## COG: BH3668 COG0489 # Protein_GI_number: 15616230 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 15 237 9 231 235 192 47.0 7e-49 MALFRKKRGTDDTIKHGAKLITVADPRSAVSEQFRTIRTNINFMAVDEEISTLAFTSANI SEGKSTVTANVAITYAQAGRKTLLIDADLRRPTLHSTFNVKNNTGLTTVLTSEADAINLN DVVEESGIDNLSILTSGPIPPNPAELIGSRRMETFIELVKSHYDMVIIDLAPVLEVSDTQ ELASHLDGVVLVVRQGVTQKAGITRAVQMLKFAKARILGYVMNDIRAENGGYGYGYGYGY GYGYGAEKKKGLFGRKKSDDQ >gi|256541375|gb|ACPV01000099.1| GENE 34 28613 - 29383 790 256 aa, chain + ## HITS:1 COG:BH3667 KEGG:ns NR:ns ## COG: BH3667 COG4464 # Protein_GI_number: 15616229 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Bacillus halodurans # 3 256 1 255 255 192 37.0 6e-49 MVLVDIHCHILPGIDDGSKNWDTSIKLAKAAVKDGVTHAICTPHTLNGRYTNHKDDIVWL TDLYQQKLDEAKVPLTVFPGQEVRLSGDLIDALDNDDILFCDEDGTYMLLEFPSEDVPTY AQDTIFKIMQRGVTPIIVHPERNSRILKEPEILQGMLEQGCLVQITASSYTGIFGKKIEE MSRKLIAAGQGCTFASDAHDLPRRQYQLSEAYKKMSQEFSQDLAQQWQDNARSIINGDPV QMDWHPLKQKKKFWLF >gi|256541375|gb|ACPV01000099.1| GENE 35 29493 - 30143 457 216 aa, chain + ## HITS:1 COG:CAC3073 KEGG:ns NR:ns ## COG: CAC3073 COG2148 # Protein_GI_number: 15896324 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Clostridium acetobutylicum # 19 205 25 211 222 201 51.0 6e-52 MVMEKLQVNPAKVNGRPVYHTIKGIFDILASALGLILLSPLFLFLIIKIRHEDGGPAFYS QERIGKDEKPFKMWKFRSMVVNADQMLDELEDQNEIDGAMFKIKDDPRITKIGHTIRKYS LDELPQLWNVLIGDMSLVGPRPPLPSEVAEYTDYDKQRLLVMPGCTGLWQVTRRSEADFD EMVWLDIVYINHSGLWEDLKLIVKTIGVVIHPNGAY >gi|256541375|gb|ACPV01000099.1| GENE 36 30201 - 30932 571 243 aa, chain + ## HITS:1 COG:no KEGG:lhv_1802 NR:ns ## KEGG: lhv_1802 # Name: not_defined # Def: galactosyl transferase # Organism: L.helveticus # Pathway: not_defined # 1 243 15 257 257 390 75.0 1e-107 MPKKEGYLPVLVGAVKNYKPGISYQRDDDGENISSKNPNYNELTAVYWAWKNLKDVDAIG LVHYRRLLFEKRPYSLDNVISIEKVNQLLQKYDVILPKKRNYYIETNYSHYIHAHHKEPL DEARKVIAEVYPNYLPAFDKVMKKRGAHMFNMFIMKRNAFESYCSFMFDVLSKLENSINI SEYSVQEARVFGYISELLMDVWLGTNSFTYVEVPWGQIGGKNTLKKGFSLIKRKIGIKTK THF >gi|256541375|gb|ACPV01000099.1| GENE 37 30951 - 32183 481 410 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256844108|ref|ZP_05549595.1| ## NR: gi|256844108|ref|ZP_05549595.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] # 8 410 1 403 403 673 99.0 0 MRWKTVKLYEYSIYLIVFLYLGFINFFKDLNSLSISIGVVISVLLYFIYVNQKNREIKVS RYVSIYIGVFIFMFGLQLYRLNSFSLSGYTIKDALIHNRYYAYMLLTFPMTEVLATAKRR MKFINNIYYMGVAILIFRFSAWFLYNKLRMNVAPGYFEVMGFAWARNGVSRLPGTFLDNY VWVMALFKIIKEKSVVIKTRNISVIVLCFLYAYIVYDSRSQQIAYLLSLVVFILIVSDTF KSKALDVVGAIAISPIIFRGNYLNKLVNTFSTSNADYGSSTQIRMMTLNTYQTLWIERGV WWGYGISNDGNYFNILDTHMVNQSDLGILSMLFQYGIIGFAIFISPFVMGLYVSLKKVKF VQNKFLFLLTCTTALTSIMSQNMYDPFRFLIVPFLLSFISVVSFMNKKEN >gi|256541375|gb|ACPV01000099.1| GENE 38 32189 - 33079 378 296 aa, chain + ## HITS:1 COG:MTH343 KEGG:ns NR:ns ## COG: MTH343 COG1216 # Protein_GI_number: 15678371 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Methanothermobacter thermautotrophicus # 5 287 2 314 328 126 31.0 6e-29 MRKQQVAAIVVTYNRKKLLKECIKSLLEQTAKPDIYIIDNNSTDGTVNYIAKYIDDNSIN YVNTGKNLGGAGGFQYGIKMVAQKDYDFVWIMDDDCIPTKNALNEFLKADIKLNHDYGFL SSKTLWTDNTLCTMNIQRRTLTKNVSDFSSELIPVTLASFVSLFVPVSVIKKVGLPIKEF FIWTDDWEYTRRISSKYECYVVTNSIVVHKTKTNVGANIATDVPERIERYRYLYRNDFFF YRKEGLKGYGYEFLRLNDHMIRVLFKAKNNKRKRLKMIFKGTIEGLRFNPSIEYIK >gi|256541375|gb|ACPV01000099.1| GENE 39 33101 - 34219 391 372 aa, chain + ## HITS:1 COG:SP0353 KEGG:ns NR:ns ## COG: SP0353 COG0438 # Protein_GI_number: 15900282 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 370 1 363 372 153 30.0 7e-37 MKKILEAFGEPILYGGQEAFVFRTIENMNKKGLKFDFLTPYYADNPDYISFIKSLNSTLY SFNLPFNVGKNRFNVVNAYKKILLDNQYDVVHINSGSISILALFTLYAKKAGVKKVIVHS HMSGKNKNVKHEVIKKIYAPIFSKYADVLVAPTKKAAYWQFSKKIFNKKGRILKNGINIQ QYAYNIGTREHYRNKLNISDHEILIGHVGRLSPEKNQIFLIKLLSYFIKNNTKAKLLLIG AGPQEKSIRMSIKQNRLEKYVQLIGNVDNVEDYLQAMDLFIFPSEYEGLGIASIEAQDAG LPVLASTNVPLDIKVTDNVMFLDLNLSLKEWYKQSLKLLSRKYDRAENTNFLKKQGYDIR NTAEKLKKIYLG >gi|256541375|gb|ACPV01000099.1| GENE 40 34227 - 35231 275 334 aa, chain + ## HITS:1 COG:SP1771_1 KEGG:ns NR:ns ## COG: SP1771_1 COG0463 # Protein_GI_number: 15901601 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 5 211 7 215 259 113 34.0 5e-25 MKSDITVIVPMYNVEKYVKKCFESLENQTYSNFEVLAINDGSPDNSSKYAKECAAKDNRI KVIDKENGGYGSALELAINSINSDYFLVCDPDDWLEEDCLEVLYTFAKNNDTDIVVGDRF DVYADDGSAHKCSVKPGYLESIEPKKVYSETQDIQLFSFFQVSPHAKLYKTQLLKNVSFP KHVSYTDFLLYLVALSRAKKVSYYDKALAFYLQDRPGNTATDIRKSIINDYLTVWKKTFE IINNNNVDNNVDFLMYRLYMQLRLILAEYKRVSINGFNNKYWSNIMSAVYELQDIEINTV PYFENSMIKKTFFKFFMNRKTANFTAKMYVTLKK >gi|256541375|gb|ACPV01000099.1| GENE 41 35504 - 36619 1288 371 aa, chain + ## HITS:1 COG:glf KEGG:ns NR:ns ## COG: glf COG0562 # Protein_GI_number: 16129976 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-galactopyranose mutase # Organism: Escherichia coli K12 # 4 367 3 362 367 459 61.0 1e-129 MENNYLIIGSGLFGAVFAHEVAKRGNKVTVIEKRDHIAGNIYTKEVDGIQVHQYGAHIFH TSNKEVWNYVQQFAEFNRYTNSPVANYKGRMYNLPFNMNTFSEMWGVGTPQEAMAKINEQ RQEMAGKEPQNLEEQAISLIGRDIYEKLIKGYTEKQWGRPCTELPAFIIKRLPVRLIYDN NYFNDDYQGIPIGGYTKMVEKMLDHPNIEVKLNTDFFDDKEEYLNNYDKVVYTGMIDKFF DYKLGELEYRSLRFETEEKNVGNYQGNAVINYTEAEIPYTRIIEHKHFEFGKGDPDKTII TREYPADWKRGDEPYYPVNNDRNNSLYAKYAELAKKQDKVIFGGRLGQYKYYNMDQVIDA ALDAVNNEFGE >gi|256541375|gb|ACPV01000099.1| GENE 42 36627 - 38054 1096 475 aa, chain + ## HITS:1 COG:SA0127 KEGG:ns NR:ns ## COG: SA0127 COG2244 # Protein_GI_number: 15925836 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 6 472 9 474 476 174 25.0 5e-43 MKVIRNYLYNVGYQVLAIIVPLITSAYVSRVLRPEGVGANAFTNSIIQYFILFASMGIGY YGNRQIAYVRDNRTKMAKTFWEIQIVKTIMTLVSIIAFEIFLIFYTRQFDYMLAQSLNLI AVAFDISWFYEGVENFKVTVLKNSLVKIVSMIAIFVFIKGPYDVTLYIVVLALSTLLGNL TLWPDIYRDLPKVKIRSLNPWIHFLPMVELFIPQIATQVYVQLNRTMLGVMVNETASGYY QYSDSLVKLILALVTATGTVMLPHVANAVSHGDMKKVNQMLYKSFDFVSAMAVPMMFGLA AISLTLAPKYYGPGYGPVGPAMMIESIVILMIAWSNALGVQYLLPIHHQKQFTISVTVGA VVNIILNFPLIHFYGLNGAMWSTVLSEISVTLYQLIAVRGLLSYRTLFNSLWKYLVSGVV MFLPVFWMNTHLKDSWLMMGLEVIVGVVIYGVMVMLLRAPIVDEAKKLIREKLGK >gi|256541375|gb|ACPV01000099.1| GENE 43 38100 - 38843 209 247 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256844115|ref|ZP_05549602.1| ## NR: gi|256844115|ref|ZP_05549602.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 247 11 257 257 453 100.0 1e-126 MKSFFQNKVNGLIVAISTVYTAILINVYLFLTSEIEAPGYMIYIFIIVVLMVSMCFLSDY RVKLAVFINRYPAKLVNIMSACIIIAASIFSFLLLTADKSSSPRTTVMYHGLISLLSFAL IPVLNRLSHEPIVDVKILTKNVINNSEKIVFSSKDEFKLTALWNGNTEEVIQFRGFCLQN DENKLHSYDVPKDNIVFMPIHKTRSREKVSIASVPEQVKPYSLGREYNIRIKDILTALKS RKVETVK Prediction of potential genes in microbial genomes Time: Wed May 25 05:44:57 2011 Seq name: gi|256541374|gb|ACPV01000100.1| Lactobacillus crispatus 125-2-CHN cont1.100, whole genome shotgun sequence Length of sequence - 2976 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 15 - 74 8.4 1 1 Op 1 . + CDS 203 - 448 227 ## gi|256844116|ref|ZP_05549603.1| hypothetical protein HMPREF5045_01414 + Prom 455 - 514 1.9 2 1 Op 2 1/0.000 + CDS 541 - 861 173 ## COG1210 UDP-glucose pyrophosphorylase 3 1 Op 3 . + CDS 928 - 1206 207 ## COG1210 UDP-glucose pyrophosphorylase + Term 1375 - 1404 1.2 + Prom 1314 - 1373 5.1 4 2 Tu 1 . + CDS 1559 - 1720 110 ## gi|256844118|ref|ZP_05549605.1| conserved hypothetical protein + Prom 1818 - 1877 6.7 5 3 Tu 1 . + CDS 1898 - 2975 750 ## LAR_0995 hypothetical protein Predicted protein(s) >gi|256541374|gb|ACPV01000100.1| GENE 1 203 - 448 227 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256844116|ref|ZP_05549603.1| ## NR: gi|256844116|ref|ZP_05549603.1| hypothetical protein HMPREF5045_01414 [Lactobacillus crispatus 125-2-CHN] # 1 81 46 126 126 130 100.0 3e-29 MIIKFLTSAGELGFCEFSKGAKEEDMFEDAQYYFVNGNNSNVSGNEMGEMISREDTKFKK LDFKPSYMNNRFVIPPIKDVN >gi|256541374|gb|ACPV01000100.1| GENE 2 541 - 861 173 106 aa, chain + ## HITS:1 COG:L177590 KEGG:ns NR:ns ## COG: L177590 COG1210 # Protein_GI_number: 15673321 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Lactococcus lactis # 4 104 44 142 313 131 70.0 4e-31 MYVKLTIQFIVEEAKKSGIEDILIVTGKNKRVIENHFDSNPELEQDLEKTGKLELLKLTQ GITDLGVNLYYTRQPHPAGLGDAIYRAKSFVAGEPFVVMLGDDLHG >gi|256541374|gb|ACPV01000100.1| GENE 3 928 - 1206 207 92 aa, chain + ## HITS:1 COG:SP2092 KEGG:ns NR:ns ## COG: SP2092 COG1210 # Protein_GI_number: 15901907 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Streptococcus pneumoniae TIGR4 # 1 82 164 245 299 115 70.0 2e-26 MKVSHKEVSKYGVIAPDGKVNDSLYNVKNFVEKPAIDKAPSDLVIIGRYLLTPEIFDILA ETKPGRGGEVQLTDAIDTLNKTICPCVQGKAA >gi|256541374|gb|ACPV01000100.1| GENE 4 1559 - 1720 110 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256844118|ref|ZP_05549605.1| ## NR: gi|256844118|ref|ZP_05549605.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] # 1 53 1 53 53 89 100.0 6e-17 MVKKIVDDFVALSENASYVKTEKDLRELLEQSKELGFIMCARLNEILGCLIVD >gi|256541374|gb|ACPV01000100.1| GENE 5 1898 - 2975 750 359 aa, chain + ## HITS:1 COG:no KEGG:LAR_0995 NR:ns ## KEGG: LAR_0995 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 8 302 3 296 305 121 31.0 3e-26 MPNKGQGGVTASKGFEYQDYATLDAFLQNYMTPGFVGVQPENKNDFKVLNEDKNRVISGQ VKSDVEAIGKVKEVVHKLPSNEPNYCIYLSHANNDLRRFIDGLNDRRKNNDTGLSIWIKK KIENIEDEDLLKIEKSDFIVVPEPSKEKYIIGTLATCLQNLKIIDINFIDLENSLLRICA KCRSTQGIITKKDFLNAIDKHNKYVDLSVSIDITHNLYGLKADINAVIDKNDTSVGELRI LKADVNSNNSDALIVSARLADNNPKYQILEKGVRLLLEKNTSKKVEYIPKKLKNFANVIN GIYALQNNNFELALELWQQIADYNEFKVNIKYLKGLTEYFLGNYEDAIKDLKRICDTQG Prediction of potential genes in microbial genomes Time: Wed May 25 05:45:13 2011 Seq name: gi|256541373|gb|ACPV01000101.1| Lactobacillus crispatus 125-2-CHN cont1.101, whole genome shotgun sequence Length of sequence - 6086 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 17 - 76 12.0 1 1 Tu 1 . + CDS 115 - 849 243 ## gi|256844120|ref|ZP_05549607.1| conserved hypothetical protein 2 2 Tu 1 . - CDS 902 - 1105 92 ## COG2826 Transposase and inactivated derivatives, IS30 family + Prom 1552 - 1611 10.0 3 3 Op 1 2/0.000 + CDS 1654 - 3579 998 ## COG3593 Predicted ATP-dependent endonuclease of the OLD family 4 3 Op 2 . + CDS 3569 - 5431 690 ## COG0210 Superfamily I DNA and RNA helicases Predicted protein(s) >gi|256541373|gb|ACPV01000101.1| GENE 1 115 - 849 243 244 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256844120|ref|ZP_05549607.1| ## NR: gi|256844120|ref|ZP_05549607.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] # 1 244 1 244 244 434 100.0 1e-120 MDAPFIFGNIVYLPTCYCVDPVYLVTRLMENTNKWSNKKGHWFEDYVIEFLKQSGYSIEK KKNTISDKSGKKEIDIILIDDDQAYAITECKIFSNPHSIKYFLYENDRMRTNLYLKHANK NFEYFENKAQYDNSYRIFLSNIIFPATNVKKWNDEIKADFIYYLDLYKLSKKLPINEMKD IENHVISKFELNREFHNKINEGNLKFLNDVRPVLILRKECKNFDEQIRLQSIPLTDNLIW NRLD >gi|256541373|gb|ACPV01000101.1| GENE 2 902 - 1105 92 67 aa, chain - ## HITS:1 COG:Ztra8.2 KEGG:ns NR:ns ## COG: Ztra8.2 COG2826 # Protein_GI_number: 15802345 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Escherichia coli O157:H7 EDL933 # 2 66 326 393 396 60 41.0 9e-10 MIYFAHPYSPWERGTNENCNGLLRQFFPKCKSMKDKSAAYVHAINHKHIQIFQYQTAEEI FKQYVSS >gi|256541373|gb|ACPV01000101.1| GENE 3 1654 - 3579 998 641 aa, chain + ## HITS:1 COG:AGpA32 KEGG:ns NR:ns ## COG: AGpA32 COG3593 # Protein_GI_number: 16119254 # Func_class: L Replication, recombination and repair # Function: Predicted ATP-dependent endonuclease of the OLD family # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 446 44 455 622 65 21.0 3e-10 MRGIRLRLKTLLIKGFKSFNEETKIDFSKETAFIGTNGSGKTACLLALNKLFSYNASDRI IHESDFYINSANQDSQSRDLYIEAVFELDKANKDEDKKCEAQYWNRLIIKNGQDKPLLRI RLESTWTNSGIADGTVDTNIYFMTSLEDNNEENKIVARRSELSSIQFIYVPAVRNPERQL SNTSDGMISQLIKRVNWDDEIKQKIVSISSQLNDTFWDEKGSKLIQDTLNQEWKSLEPNS RFSNVKASVSSIDINKIMSRIRFEFNSNVTNNVFSVDEMSDGIKSLFYISNIASVLAIEN TVQEDDIKIEYPVVTIFALEEPENHISPHLLGKVMDKVKSITKLDNTQTIITSHSPAIIK RVLPENVRYFHLTKDAVTEVKKIKLPDDKGEKYKFIKRAVQTYPELYFSKLVILGEGESE EIVLSKIISSYTGLDEANISIVPLAGRMVNYLWDLLESLNIAHITLLDLDYGRYLGGKKR IKDIIDELKRFNPNDDELEKIENKCADLAENKNNLLDLTKQLEKYDVFFSFPLDLDFMML AAFLDKYKGIASGSPKTKADERKKILDRTLKGKREEEVDYDKNDIELMRWYNMLFLGIGK PLVHFTALEDISEEELCNNLPEQLKRLFESVKNKLDKKNDE >gi|256541373|gb|ACPV01000101.1| GENE 4 3569 - 5431 690 620 aa, chain + ## HITS:1 COG:TM1238 KEGG:ns NR:ns ## COG: TM1238 COG0210 # Protein_GI_number: 15643994 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Thermotoga maritima # 16 581 21 611 648 117 25.0 6e-26 MMNKDQWKPSNGIVLESNAKQAIFTNDNILVQAGPGAGKTELLAQKASYLFQTGLCPAPF NILAISFKRDAAENIKDRVSKRVGKEEGSRFISKTFDAFAKLIVDRFYLVLPKDLRPRPQ YEISSNSTQTKIYERAFGYVPDRNAVNDLLKVDMNDINPQSNNYKFWKYMLMGEEKTYLT FEMISRLALYIIQHNKYVRHIIRSAFPFVFLDEFQDTTVLQYDIFRECFLNSESKITAVG DNKQQIMLWAGADKEILGKYTREFRATKVFLKENHRSALNIVKLQKLMYEKIDKDINPDI IINKNKDEGKVFLIETNEPSKEAEIVGENIIKEIRMGVKPSEIAILVKQRPEDYIRNIKE YLKTKNVTVRVESKYTETFSEPIVKLILKMILASINVINGQEWQELVDETSEIFLINLAD AEIEQKYIKKLNVFLDKLFKNLLVQVHENRSKSNYYCKIVESIIDFFTINRLQVYYPEYL EIDQLNRTKTQFIEQLKECGSINELNTDIKEIWKEIIDNYLGKNSIATLTIHKSKGLEYN SVYFIGLEDSAFWSFSNQSESDRKAFFVAISRAKEKLYFTFCRGRQTVRNIYQTKKNIKE FYELFDKSGIVKEINDNNNS Prediction of potential genes in microbial genomes Time: Wed May 25 05:45:26 2011 Seq name: gi|256541372|gb|ACPV01000102.1| Lactobacillus crispatus 125-2-CHN cont1.102, whole genome shotgun sequence Length of sequence - 9598 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 4, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 17 - 454 172 ## gi|262047502|ref|ZP_06020458.1| conserved hypothetical protein + Prom 540 - 599 4.3 2 1 Op 2 . + CDS 659 - 3652 2255 ## COG1112 Superfamily I DNA and RNA helicases and helicase subunits + Term 3887 - 3946 16.3 + Prom 3781 - 3840 9.3 3 2 Op 1 . + CDS 4019 - 4939 333 ## COG4823 Abortive infection bacteriophage resistance protein + Prom 5006 - 5065 9.7 4 2 Op 2 . + CDS 5197 - 7176 2159 ## LCRIS_01741 levansucrase + Term 7219 - 7261 1.0 + Prom 7502 - 7561 6.2 5 3 Op 1 . + CDS 7689 - 8243 337 ## gi|227878226|ref|ZP_03996197.1| hypothetical protein HMPREF0506_1198 6 3 Op 2 . + CDS 8230 - 8628 188 ## gi|227878227|ref|ZP_03996198.1| hypothetical protein HMPREF0506_1199 7 3 Op 3 . + CDS 8638 - 9054 292 ## gi|227878228|ref|ZP_03996199.1| hypothetical protein HMPREF0506_1200 + Term 9151 - 9206 11.6 - Term 9140 - 9191 6.5 8 4 Tu 1 . - CDS 9327 - 9584 153 ## COG3328 Transposase and inactivated derivatives Predicted protein(s) >gi|256541372|gb|ACPV01000102.1| GENE 1 17 - 454 172 145 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|262047502|ref|ZP_06020458.1| ## NR: gi|262047502|ref|ZP_06020458.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US] # 1 145 1 145 145 192 100.0 4e-48 MFFAFLSILFVILDVIFACYMYRKNKNLEKYTKVANNYYDIYNLFFIGTLINWISSNLTL NILIVMLFIFGMFFVVALIKYEFEANTNQVSKSKWWYSFLKDVLANIMIAFLLGIFANTS FPSTWIIILIILSFAFYIFLLKKSE >gi|256541372|gb|ACPV01000102.1| GENE 2 659 - 3652 2255 997 aa, chain + ## HITS:1 COG:SA0089 KEGG:ns NR:ns ## COG: SA0089 COG1112 # Protein_GI_number: 15925797 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases and helicase subunits # Organism: Staphylococcus aureus N315 # 2 980 3 1050 1050 385 31.0 1e-106 MEIKKNILNSWILMEQLSEGDVNTKRGDRNAAKQFDPTKAEGHGYYEYFRWMINRKYKGS LTKKSSNSGLIFYIDTFRFQQVIDIIVHKYHLKNLQDEVNNKQTKFGVSIAFNKNLHLLE DQTFVTMSSYVLNKKELIDDSDKFKKFEDQVKNDINELFGFQENDLDEKSFELQFNEAFK KLVKRYKISKKTSYWSIVKKIDSDDINLHSFFIDDLNWAKKEKSDHLERYLNGLNPDQRI NLDPTKNIDIFDKILQPKNYPMGHFLSKFPASLMQQVAINLAINDKNDIRTVNGPPGTGK TTLLKDIFAELIVRQAKEICDLDKKNVYLPGDSKVGQTKLPDQISNKNIVVTSSNNGAVQ NIVDELPQIPDKDVFKEVIDELLNVHYFDDIANANLNKPKYWGLFSLEGGRKENMNNIID KLGQMVKKLQDENYQSDTDAYDDFIKQYNLVENRRNQLQDYANSLGQLQKWREKVQEYKI TTVANGDILFSKLTPVLQEVTEEINSKKEEYQEIASSMENVRFRDRFFNKEKITQKRKKN EKLSKLKRVIEEKNAEKHKLENKIDQLQVESHTYARILNDEKLKEAMVPNYQRDFSNRDV YDQFEEETYWYTSNDLREESKLFVLALRVRKQFLYENSKSLIMAIVNWNNQDKKVKENQQ QLTLYSWQWINFAVPIISTTFASFHRMFKNLPANSVANLFIDEAGQAVPQSVVGPLLRSQ KIMAVGDPAQIKPVNTLDSKVISLIGDRIFKVGEKYVSGDTSVQAIMGQASQYGYYKDKE HQNWIGIPLWVHRRCLNPMFNIANTISYNNKMVLPSNVKEKEAKGGKLEKKQGKIGAGNW IDVKGVSQNKFVEEQARMLKRLIQKIVNNSNNPFTMDDIFVITPFKNVAYQLTKELKDIN FIKYENGKPSNVGTVHTFQGKENKVVFLVLGASDKEKGAANWAVSEPNIINVAATRAKVW FFIIGDKKLYQSIGSETITKTIKAIDDYNRKIDSKSN >gi|256541372|gb|ACPV01000102.1| GENE 3 4019 - 4939 333 306 aa, chain + ## HITS:1 COG:lin2373 KEGG:ns NR:ns ## COG: lin2373 COG4823 # Protein_GI_number: 16801436 # Func_class: V Defense mechanisms # Function: Abortive infection bacteriophage resistance protein # Organism: Listeria innocua # 1 303 23 285 298 66 26.0 7e-11 MLIENDDYAKNVLSKIGYYTLINGYKGLFLRKNDRGNIINPHQYINGTKIEDIVSLYQFD KKLRAILYNGLLSYETTLNSELAYRFSEMFPVEYSYLDINNFKHDSDNTVRVLKTISSLT TKIEQEAHKRGRNAIKHYIDSHTCIPLWVVTEFMTFGDLNYFYINCKDELRQKIARDFTL KYRKTNDLSQSNAITPEVIEHINHVTNMFRNAVAHNEITYSKVINRGPNLSSVRNILGQY DLRLNSQPGVFELILSLRLVLDQAEYVEIANAIKQLLRDGKEQFNPDTMSNILNSMHFPE EYEFWL >gi|256541372|gb|ACPV01000102.1| GENE 4 5197 - 7176 2159 659 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01741 NR:ns ## KEGG: LCRIS_01741 # Name: sacB # Def: levansucrase # Organism: L.crispatus # Pathway: Starch and sucrose metabolism [PATH:lcr00500]; Metabolic pathways [PATH:lcr01100]; Two-component system [PATH:lcr02020] # 1 659 1 659 659 1087 94.0 0 MNKRSTLVTFASAAVLLGLFNINNSLTVKADTVEQPAVGQRNTQAATTNDQNDKSDQNQA QTNQNNDVATDQDQDQTTQNNTGANTTNNTNNQNNTGVADTTNTDQNAQNQVGVDTTQST SDNVSNGFNNTSYSQNNDAAVYKLDPQTVQILQAADVNPKDLTEVQLKEVRKLNFNELDK DTSTHWSYDQYAGVAKKMIDQDAQYRVPYFNAKKIKNMPATVTRDAQTGQVAELEIWDSW PVQDAKTGRVVNYKGYQLMIAMMGIPQQNDAHIYLLYNKYNDNNLNHWKCAGPIFGFNAK PTDQEWSGSATVNKDGSIQLFYADVDTRENTNHQKIATVNLKLKVNKKKNTISIAKRSHR HVLFEGDGYHYQTYKQWKSTNKGADNVAMRDAHVISVGGQRYLIFEASTGSNNYQGENQV YDWKNYGGTPKEALQNFLKVTANDDMRSRATWANATIGIIRLTKNENNPKVAEVLPSLVN SLMVSDEIERPNIIPMNGKYYLFATTRLNRGTGDDLWQQADAKVGDNVAMLGWVSDHLTY GYKPLNGDAAVLVASVPFNWRTSTYSYYAVPIKGNKKEVLVTSYMTNRGFASGPNKRSTM APAFLVRIDGDTTKVENIATAQGDWVYDKKSKRKSMIAKTIRGAHLKGEPIDHSLLEKA >gi|256541372|gb|ACPV01000102.1| GENE 5 7689 - 8243 337 184 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878226|ref|ZP_03996197.1| ## NR: gi|227878226|ref|ZP_03996197.1| hypothetical protein HMPREF0506_1198 [Lactobacillus crispatus JV-V01] # 1 184 1 184 184 319 100.0 4e-86 MRQFYLINDNLSEQKLAEEYLEDEYNLNPNIQESVLRIINFLSNVTLDSSGNIEQLKPEV KEGIIIGYSFKDEYKVPNSNRYIKYEIVKKLMSQNHVYEIRFLSETNEGVRKNCRILFTL NESKVYFVWTYGFTKFPTKDQRKIRKMNLLTDQLGKLAELIHNQLVNNREKNFIGRRNER HEVQ >gi|256541372|gb|ACPV01000102.1| GENE 6 8230 - 8628 188 132 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878227|ref|ZP_03996198.1| ## NR: gi|227878227|ref|ZP_03996198.1| hypothetical protein HMPREF0506_1199 [Lactobacillus crispatus JV-V01] # 1 132 1 132 132 181 100.0 1e-44 MKFNKINPNNSRLNSYQFQLSQKIFGKRISLNLNRDEAAKLTGLSLSTYTEVEQGIDLES SEEKYQQVLNKLSSFSRKRIKIKEIDNKTLQHKTSKVIAKMKINESSNKQKTLSFYQVGI KKSVFQPQMVKK >gi|256541372|gb|ACPV01000102.1| GENE 7 8638 - 9054 292 138 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878228|ref|ZP_03996199.1| ## NR: gi|227878228|ref|ZP_03996199.1| hypothetical protein HMPREF0506_1200 [Lactobacillus crispatus JV-V01] # 1 138 1 138 138 245 100.0 7e-64 MSVQLKYNGFIINKLNYEYKGELEQQQDSFYLEFMFDDISVAISANDAIVTLSGHANCSN EENDNDSEYRTLNIKVDYFYDIENPKKVKSPEKIQKIVNNYGVNNAIILFQELVKQITSL DIVGPISSYEFRFPGSLK >gi|256541372|gb|ACPV01000102.1| GENE 8 9327 - 9584 153 85 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 85 307 391 391 80 49.0 5e-16 MEIESDLLVFYNYPKQIRASIYSTSMIKSFNNVIKRKAKPKAEFPTEQSLDAFIGIQAMS YNDRYFNRIHKGFGQVQDTLESYFD Prediction of potential genes in microbial genomes Time: Wed May 25 05:46:02 2011 Seq name: gi|256541371|gb|ACPV01000103.1| Lactobacillus crispatus 125-2-CHN cont1.103, whole genome shotgun sequence Length of sequence - 2684 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 11 - 70 9.1 1 1 Tu 1 . + CDS 202 - 1164 1137 ## COG1482 Phosphomannose isomerase + Term 1176 - 1232 14.2 + Prom 1208 - 1267 8.2 2 2 Tu 1 . + CDS 1299 - 2582 1115 ## COG3538 Uncharacterized conserved protein + Term 2586 - 2631 1.1 Predicted protein(s) >gi|256541371|gb|ACPV01000103.1| GENE 1 202 - 1164 1137 320 aa, chain + ## HITS:1 COG:lin2215 KEGG:ns NR:ns ## COG: lin2215 COG1482 # Protein_GI_number: 16801280 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Listeria innocua # 2 317 3 315 318 313 51.0 2e-85 MEPLFLIPYFRPKIWGGRKLKDIFNYDIPDGKVGEAWIISGYKEDASIVTEGPLKGMSLR DVYLKHPELFGNPKAKEFPLLVKFLDANDNLSVQVHPDDDYARKVENDSGKTESWYVMQA DPGAYIIYGHHAKNREELAEMIHKGEWDKLLRKVPVKAGDFFYVPAGTIHALTKGCLVIE TQQSSDVTYRLYDYDRVGKDGKKRELHTQKSIDVTTVPHVDPKLDVKTNKDQDAEIKTLV EPPVSPHFYLWQIDLDGTWKTGLKDHPYLLVSVIKGEGKLEADGKSYDLKIGTNLIIPNE MKNFTFTGKMRIVISAPGEE >gi|256541371|gb|ACPV01000103.1| GENE 2 1299 - 2582 1115 427 aa, chain + ## HITS:1 COG:L133416 KEGG:ns NR:ns ## COG: L133416 COG3538 # Protein_GI_number: 15673481 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 421 1 425 431 476 52.0 1e-134 MKDIIDEQVKNYMNEVEAECGTKDERLYTIFNKTFLDTLQNALKVDENKNIFVLTGDIPA MWQRDSSAQLRPYLLLAKTDDNIKDIITRVVKRQFFNMNLDPYANAFNMTANNQGHQTDK AKMGPWIWERKYELDSLCYPVQLAYLLYKNTGETAQFDANFVSGIKKMLATIKTEQHHEN SNYTFERDCDVPTDTLKNKGKGTPVAYTGMNWSGFRPSDDACTYGYLIPSNMFAVVVLNY IQEIFSSILDDSDIVAKAKTLQNEINEGIQRYGIVEHNGKKQYAYEVDGRGNYVLMDDSN VPSLMSAPYIGYVKPTDDIYQNTRRFILSPDNPYFYIGEYWSGQGSPHTPKGNIWPIGMA LVGLTQETKAEKQNLLYLMANTTNGSNMIHESFNPNDPSDFTRPWFSWANMMFCELLLSY LGHDVTL Prediction of potential genes in microbial genomes Time: Wed May 25 05:46:04 2011 Seq name: gi|256541370|gb|ACPV01000104.1| Lactobacillus crispatus 125-2-CHN cont1.104, whole genome shotgun sequence Length of sequence - 6271 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 1, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 8/0.000 + CDS 6 - 464 391 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 2 1 Op 2 7/0.000 + CDS 461 - 784 478 ## COG1445 Phosphotransferase system fructose-specific component IIB 3 1 Op 3 2/0.000 + CDS 832 - 1935 1394 ## COG1299 Phosphotransferase system, fructose-specific IIC component + Prom 1954 - 2013 4.5 4 1 Op 4 1/0.000 + CDS 2043 - 4709 2453 ## COG0383 Alpha-mannosidase 5 1 Op 5 . + CDS 4754 - 6269 778 ## COG3711 Transcriptional antiterminator Predicted protein(s) >gi|256541370|gb|ACPV01000104.1| GENE 1 6 - 464 391 152 aa, chain + ## HITS:1 COG:lin0421 KEGG:ns NR:ns ## COG: lin0421 COG1762 # Protein_GI_number: 16799498 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 1 147 1 147 152 98 33.0 4e-21 MKFEKEDVLLNVNVADKESLLKKISEYAEEIGFTNDPEGLLGSFKKREEEYSTGLQDGFA IPHAKSEAVERVGIIYVRLEKPIEWKTYDNKPVTDVFALMVPPKNAGNTHLKMLANLSTA LLEDDFKQNLKTLNDSQEIAKYIRKKIGANKL >gi|256541370|gb|ACPV01000104.1| GENE 2 461 - 784 478 107 aa, chain + ## HITS:1 COG:lin0422 KEGG:ns NR:ns ## COG: lin0422 COG1445 # Protein_GI_number: 16799499 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Listeria innocua # 4 106 1 103 110 108 58.0 2e-24 MSDVNIVGITSCPAGLAHTPMAAKALELAGKKLGYNVKIEQQGIMGRVHEITPEEAQKAD FVLIGSDQKIEGMDRFKGNKVIRVDINTCIQAPEALLKKCVSVVKGA >gi|256541370|gb|ACPV01000104.1| GENE 3 832 - 1935 1394 367 aa, chain + ## HITS:1 COG:lin0423 KEGG:ns NR:ns ## COG: lin0423 COG1299 # Protein_GI_number: 16799500 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Listeria innocua # 4 350 2 348 370 293 48.0 3e-79 MKFKKLMHDWQGYIMTGISYMIPTIIGGALIVGIPQLIGMACGVNDLGKFAKATGFFHML YQVNQVGWIGIGLVNLVIGGYIAYAIGDKPALGAGFIGGQLATNTQQGFIGAMVAGFIAG YVARWCRKHINVPEKWNSANELILTPLLTTGAVAIVNGLILAGPLAWINTGLLAWIKTMV NDHTNGLILALIMGGMIGVDLGGPVNKAAWAAGNFFFLEGVYKPCLYTNIAICAIPLGYA LMTFIWPKKRFSPQLLEMGRTNLINGTFGITEGAIPFWMKAPQLIFVNVIGGALGAGVGE LMGVSSHIPPLGGIPGILTADNIPAYVCGILACALFIAVVAPLVANFTEDNGKKISEDDI KLDITTE >gi|256541370|gb|ACPV01000104.1| GENE 4 2043 - 4709 2453 888 aa, chain + ## HITS:1 COG:lin0424 KEGG:ns NR:ns ## COG: lin0424 COG0383 # Protein_GI_number: 16799501 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-mannosidase # Organism: Listeria innocua # 1 887 1 874 875 646 39.0 0 MVKTVHVVPHTHWDREWFFTTSRAQIYLLKDLKDVINNLENNVGFNHFILDGQASLIADY LKWRPQDLKKVQNLVKNKKLIIGPWYTQTDQFLPSGENIVRNLLYGMKICSKLGGYMNIG YVPDSFGQESSMPQIYKGLGIDKAVLWRGFPNYEATHSEFIWKGEDGSRINVYRMACGYF IGGLIDENNLDKIMTSEPFASVVKQATTDQILFPQGSDMAPARNNLPQVIEKLNERNKDF KFKISSLEEYIAAVDKVAPKLNMLKGEFNIGKNMRVHKTNYSSRSDLKKMNTLIQDYLTN ILEPVLTLGTQFGISYPKGAADDIWEKMFENSAHDSMANSVSDNVNEDIYLRYKQARDMA TSLVELTLRQISVQIKKPDDKAITLTVFNTTPVAKSGLVTKTIYTPAQNFEIQDKDGEPI PFVVAGFKDETEEVNGATVQLNPGNRIYQPEKVYKTKISLVVKNIPPMGYQQYYLIPNVG KADELSVSNQTTIENEYYKIEVNLDGSLRITRKTDGRVFDKQAILEDNGDDGDSYNYSPA KKDWVIYSTDQAFKVKANKSALLNELKIDYDFRVPADLDERAHRKAFVLMPVSLEIKLKK DNPVIGFRVVTDNRQPLDHRLCIDFDTQIVTDGSIDDIQFGSIKRPFELKKAILDWQEHP NDWQEKPISINTMQTYTSLSDKNNMFAIFPNGVREYEDIGKHHSTIRLTLFRTYGRLGKA DLLYRPGRASGDATVATLAAELKKVLSFDFGVYITDCDFEKANVTNVAKEFKTGLQVFEY AEFLNGRLIFPFNVVKRKLPEEYSLFETKGEFTTSTVKKAEERKGYVIRLYNASFKEKED ELKFNKAPNKVELVDLKEEPLKKLEVVNNTVKLPKLTHDKIVSIYYEY >gi|256541370|gb|ACPV01000104.1| GENE 5 4754 - 6269 778 505 aa, chain + ## HITS:1 COG:BS_licR_1 KEGG:ns NR:ns ## COG: BS_licR_1 COG3711 # Protein_GI_number: 16080911 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 7 478 5 475 499 158 25.0 2e-38 MSITQPRLKSILTSLISKNNDTYISPKALAAKLGVTTRTLRSDIKNLNNSLKIYDVSIKN KRGHGLYLLINDREKFKSLVERIKESGIVTDGGDDYKKRLKDFLLLILTKPREIDDIIST MYISDSTVDKYLKEARKVAKNYHLKIQKDGDLLRMKGSESDIRSCIIDYIDNKRGNNYVR GFSKSEKVIFSDLDLNKLLTKVTNLIVALGLPMSDYSDKNITIHLALELARSKTNNQLRN FNRNIPYIREEYFDKVSKFFEEVFRSYELEYSEAEFHYFIYHLALNYPQLMLEHSNNDVK NKKIHDIVIEFLDRIKDDYVFNLMQDKELIRNLEKHLELLLKVKNINGQRKNPLLNVIVS TFPLAYEMTVTASPLIEHQLNMKLSPDELAFITLHVGASMERLYNNRWDKKRAALVCGSG TATAMLLKARLSSQFSEYLNIVGVYSLYEYQHSDLKNTDFVISTVPIYESKLPVIQVDLS NFQNDSNELYQYLVSVSDKNKVIMN Prediction of potential genes in microbial genomes Time: Wed May 25 05:46:06 2011 Seq name: gi|256541369|gb|ACPV01000105.1| Lactobacillus crispatus 125-2-CHN cont1.105, whole genome shotgun sequence Length of sequence - 3672 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 + CDS 70 - 450 261 ## COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain 2 1 Op 2 . + CDS 461 - 3085 2157 ## COG0383 Alpha-mannosidase + Term 3111 - 3151 4.3 + Prom 3098 - 3157 6.2 3 2 Tu 1 . + CDS 3238 - 3670 84 ## LCRIS_01818 transposase Predicted protein(s) >gi|256541369|gb|ACPV01000105.1| GENE 1 70 - 450 261 126 aa, chain + ## HITS:1 COG:lin0425_2 KEGG:ns NR:ns ## COG: lin0425_2 COG4668 # Protein_GI_number: 16799502 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol/fructose-specific phosphotransferase system, IIA domain # Organism: Listeria innocua # 1 96 5 100 125 74 37.0 3e-14 MIDDLEKYHYVESDFRDNVYKREDLYSTAIGGGIAIPHPIKYAATQSKVSFARLNEPIKW DDKNMIKYVFLISVNKKDYPNIQELFTFLVDLQQNQQFRNLIDKCKTINETKDVLRTIIQ SVGYEK >gi|256541369|gb|ACPV01000105.1| GENE 2 461 - 3085 2157 874 aa, chain + ## HITS:1 COG:lin0449 KEGG:ns NR:ns ## COG: lin0449 COG0383 # Protein_GI_number: 16799525 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-mannosidase # Organism: Listeria innocua # 1 864 1 849 860 657 42.0 0 MVKAYLVNHTHWDREWYFTTQDAQVLSDQLFTQVLDELESHPEANFTLDGQMSIIDEYVE IHPEAKERIHDLVERGQLFIGPWYTQTDANIPAAESLLRNLVIGINDARKYYGRAMMLGY LPDTFGFNANLPMILNQVGIHDFLSWRGTNFKRQAGSVYFKWRALGNSVVFAANFPLVYY TGQIDLASKKNLKDFVKNRLDKGIEFEAKNGNNDEVLIPSGIDQMNIVHNISDTVKKINQ YSKNDVQISTYPEFMKRLRSKKLNTYQGELRYPTYSRVHRTIASVRSRNKRKNFKLEQDI LRRVEPLMLIAKKSGIQVSNGLLIKLWKQLFDSQPHDTLGGSVTDNVAVDIDHRFKQAFE IADGLENYIKKRIAQRLNLTDKDVIVFNTDPYDFDGYKLITFMSASKKIKFPDKYEATLV KEKYTPTRPNIMQLTPNGFEFKDEPGYYKLYVLIKLRMNGLGYKVIHFEDADQELTSLQE LDNNSIANDQLTVVYQDGKFTLRDKNQEYYDVISVYDQANDGDTYDFSPLRKDHEIRLNW NGKLTKKETSTYKELILEGKWLLPYSLDDRLKEDGQKKEVPFKLTVSLTNGEKVLSCRLH INNTVLAHRLRLRMRSRMQTEYAHTQIQGGFRKTKNEPIDDNWNDEFVEKPVNIYIFDRA VGQNDGKNGLYFFGKGEKEYELVDDSIYVTLMATTGQLGKSNLLWRPGRASGDTTSVGHV MTPTPMAEELGNNDFEFGITPFTGEELSEKNIATRLDKWLSPNVSYQIQKYNLFVNRLDN KIWDIEFPDNLPKITDEESYLDLNLLDGIEVSALYPAYTIKDTMVLRLSNMTSETIDLSF LKKKGYIKTNALEEVDRSDYKVGPYDMNTFIRKM >gi|256541369|gb|ACPV01000105.1| GENE 3 3238 - 3670 84 144 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01818 NR:ns ## KEGG: LCRIS_01818 # Name: not_defined # Def: transposase # Organism: L.crispatus # Pathway: not_defined # 1 141 1 141 344 242 85.0 3e-63 MTNSNSSVSRHYHQLTSEQRGQIQAMLDSGITSCSAIARKVGCHKSTISREIRRGSVLQR DHNYLLYEHYYADIAQIYHDKRRRNYYKRDPLKHYAVFLRMLSRRFKAKFDATSIDEFVG EFKRTMPGYPCPSTPTVYRILIRA Prediction of potential genes in microbial genomes Time: Wed May 25 05:46:17 2011 Seq name: gi|256541368|gb|ACPV01000106.1| Lactobacillus crispatus 125-2-CHN cont1.106, whole genome shotgun sequence Length of sequence - 32713 bp Number of predicted genes - 34, with homology - 34 Number of transcription units - 22, operones - 9 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 166 108 ## LCRIS_01598 transposase - Term 52 - 103 -0.9 2 2 Tu 1 . - CDS 295 - 978 288 ## COG1737 Transcriptional regulators - Prom 1021 - 1080 3.5 + Prom 920 - 979 3.3 3 3 Op 1 . + CDS 1015 - 1671 656 ## EF2258 hypothetical protein 4 3 Op 2 . + CDS 1715 - 3034 1033 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 3073 - 3137 4.3 + Prom 3092 - 3151 7.3 5 4 Op 1 . + CDS 3289 - 5445 1950 ## LCRIS_01718 putative protein without homology 6 4 Op 2 . + CDS 5462 - 6025 585 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 6028 - 6085 4.4 + Prom 6169 - 6228 7.0 7 5 Tu 1 . + CDS 6264 - 6797 703 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase + Term 6806 - 6842 4.2 8 6 Tu 1 . - CDS 6823 - 7365 251 ## LCRIS_01715 transcriptional regulator - Prom 7402 - 7461 7.1 - Term 7778 - 7814 0.2 9 7 Op 1 . - CDS 7822 - 8007 76 ## LCRIS_01714 membrane protein 10 7 Op 2 . - CDS 7976 - 8647 763 ## LCRIS_01714 membrane protein + Prom 9202 - 9261 6.6 11 8 Op 1 1/0.000 + CDS 9467 - 10804 1736 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases + Term 10847 - 10885 4.4 + Prom 10809 - 10868 5.5 12 8 Op 2 . + CDS 10936 - 11709 626 ## COG1737 Transcriptional regulators 13 8 Op 3 . + CDS 11721 - 12713 765 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D + Term 12950 - 12988 3.0 + Prom 12732 - 12791 8.9 14 9 Op 1 . + CDS 13015 - 13293 323 ## LCRIS_01710 hypothetical protein 15 9 Op 2 . + CDS 13349 - 13747 420 ## LCRIS_01709 PTS system, IIA component + Term 13758 - 13792 -0.1 - Term 13738 - 13789 9.6 16 10 Op 1 1/0.000 - CDS 13794 - 14903 1258 ## COG0474 Cation transport ATPase 17 10 Op 2 . - CDS 14924 - 16444 1156 ## COG0474 Cation transport ATPase - Prom 16483 - 16542 3.8 - Term 16466 - 16511 8.0 18 11 Tu 1 . - CDS 16624 - 17310 366 ## LCRIS_01707 hypothetical protein - Prom 17342 - 17401 7.2 + Prom 17363 - 17422 6.7 19 12 Tu 1 . + CDS 17451 - 18722 1147 ## LCRIS_01706 hypothetical protein + Term 18739 - 18781 8.9 - Term 18814 - 18864 13.2 20 13 Op 1 . - CDS 18865 - 19515 874 ## COG0406 Fructose-2,6-bisphosphatase 21 13 Op 2 . - CDS 19576 - 20322 645 ## COG5549 Predicted Zn-dependent protease - Prom 20514 - 20573 5.8 + Prom 20287 - 20346 7.8 22 14 Tu 1 . + CDS 20421 - 22727 2154 ## COG3973 Superfamily I DNA and RNA helicases + Prom 22983 - 23042 5.7 23 15 Op 1 34/0.000 + CDS 23161 - 23808 508 ## COG0765 ABC-type amino acid transport system, permease component 24 15 Op 2 16/0.000 + CDS 23822 - 24442 380 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 25 15 Op 3 . + CDS 24446 - 25261 948 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 26 15 Op 4 . + CDS 25263 - 25712 312 ## COG2153 Predicted acyltransferase + Term 25870 - 25914 0.5 27 16 Tu 1 . - CDS 25709 - 26266 513 ## COG2755 Lysophospholipase L1 and related esterases - Prom 26383 - 26442 6.5 + Prom 26238 - 26297 11.4 28 17 Op 1 . + CDS 26326 - 27240 843 ## COG1072 Panthothenate kinase + Prom 27269 - 27328 3.0 29 17 Op 2 . + CDS 27358 - 27933 935 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) + Term 27946 - 27989 8.7 - Term 27934 - 27977 4.1 30 18 Tu 1 . - CDS 27980 - 28381 95 ## LCRIS_01695 membrane protein - Prom 28486 - 28545 6.9 + Prom 28393 - 28452 10.1 31 19 Tu 1 . + CDS 28478 - 29809 1075 ## COG0675 Transposase and inactivated derivatives - Term 29789 - 29818 2.1 32 20 Tu 1 . - CDS 29977 - 30228 119 ## LCRIS_01695 membrane protein - Prom 30261 - 30320 5.2 33 21 Tu 1 . - CDS 30355 - 30750 477 ## COG3759 Predicted membrane protein - Prom 30771 - 30830 8.3 34 22 Tu 1 . + CDS 31051 - 32697 1734 ## COG4166 ABC-type oligopeptide transport system, periplasmic component Predicted protein(s) >gi|256541368|gb|ACPV01000106.1| GENE 1 2 - 166 108 54 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01598 NR:ns ## KEGG: LCRIS_01598 # Name: not_defined # Def: transposase # Organism: L.crispatus # Pathway: not_defined # 1 54 291 344 344 99 96.0 2e-20 NCNGLLRQFFSKGKSMKDKSKAYVQQATNAINHKYRRILQYHTAEELFKQYISS >gi|256541368|gb|ACPV01000106.1| GENE 2 295 - 978 288 227 aa, chain - ## HITS:1 COG:CAC3424 KEGG:ns NR:ns ## COG: CAC3424 COG1737 # Protein_GI_number: 15896665 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 12 224 7 225 235 68 26.0 9e-12 MNIQTICEKYQLNKDEEKILLYMNDHRSELKNLRIRELAKRTFTSPSFIVKTCKKMGLSG YSELVFLITDTPKFPNNTENDLKVRSCVKPFSNLMDKHKDSMIMILGSGFSQNIANYMSE YLNLYGFRCTANSHLELLRKNKDALIIVISNSGETKRLAELCIHAKQNNRDILSFVGDRN STIAKNSSLVISSDTFTPSSFDSHYPQLFFGLTLIYFELLMSYFLSK >gi|256541368|gb|ACPV01000106.1| GENE 3 1015 - 1671 656 218 aa, chain + ## HITS:1 COG:no KEGG:EF2258 NR:ns ## KEGG: EF2258 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 16 218 3 205 205 295 69.0 1e-78 MSENDVKKNEVPQNRDREFLADPWARTRTRNGLAADEVISALQKSIRKGKERAACEFAYE MYISSPQMEEKLWRRLQAISVEDIGMGNPKAPILINSLNQMRQNFSYNEPDRAMMFVHAI RYLCESTKDRSSDLLKNIIIKNFALGYVPKIPDYALDKHTTRGKKMGRGSMHFLEVDSKV TPQLKVNNHYWDEYHKIRENWDDSKVIPNAFKFNPYQI >gi|256541368|gb|ACPV01000106.1| GENE 4 1715 - 3034 1033 439 aa, chain + ## HITS:1 COG:VC1282 KEGG:ns NR:ns ## COG: VC1282 COG1455 # Protein_GI_number: 15641295 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Vibrio cholerae # 9 434 8 425 446 210 31.0 5e-54 MAETTAKKESLITKLDKVLTPIGQKLGNEKHLQAISNGMLFGLPFLVIGSFFLIVANPPI VMDKYNPATANFFMKWIAAWKYWAVAHYAQITIPYNMTMGMFGMICAFGIAYELSKGYRR EHPATDGMISLVTFLMVTTTVDKNNKIDINNLGTNGLFVAIIIGLLAVEINRLIEKSNFK LKLPDSIPPMVANFINSLIPLLVNIFIFYGADLILVGMTHADFTTFIMKCLTPATFLANS LWGYILIVTLGNLLWLIGVNGSNVIFPIVFATGIAATGANAALVAKGLAPTHLMNLQMFR IAVLGGSGNSLALCILMMNSKVEKYRALGRLSIIPGICSINEPIIFGTPICFNPILGIPF LIAPVINIVLTYFAESLHWIGMGYIVDPSFTPFFFQAYMSSMDWRNIIFECILIAIGIVI YLPFFRVAEQNELKNIPAA >gi|256541368|gb|ACPV01000106.1| GENE 5 3289 - 5445 1950 718 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01718 NR:ns ## KEGG: LCRIS_01718 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 718 1 715 715 1015 73.0 0 MTEDAKLKQVINKIDSAIGWIYSLGSIVPNSLSAELNPDDDSVLIYLQTPNNLTIPSLLL NDQTYGYILEQDDASNGEGIIVSLAGSFMDATKPEERVDLDPKQLRQDMDYLYNAWYRLT QKNAEINSYYRDTDKMSTADVRENLQSILAASGLYGADILAQTETQLAQMPDAYLLAIPK EVQRSTDDDEAAGRVVYHMVMEIPNDSYLFKPDPDFSLLKNAPDKADQAVGNNEDSNLIG DPIERPEAEKLAAKFRQASEALVQNNLIPADSFGVEYDEEQHDLIVYLQSPNDVMIFRND ILGTKIATMIENESVEQCAAHLAISFILNFARDLQDTAGQISDDDWDAYCADLDYLYRLV FGFSYSIPDVDGYLSNTNERTLDDLRQKLNSYVQASDNEDKDQLIEIINKLGYGYLYSLM AYIDSISDDQDANVITNFLGHSLIYVPNQDIDAGFTPDPNFSVLDENNPHDTWQNGSIVI DSDQGDTSGIVAKLYPKIQSAAGNLTKRCDFEPGSINVQYSAKQGLTGILFQTPGRVLSP SFAWNAQNAAQLVDMEPEQLETQLTLDYVFGAFGEAIDDLANEIRKNQGQLDQDSLERIN VDLAYNFERVTKLSHTYADMDPALKEMMGDDYAERKMRDFLTTSMVVDDNDAAYQVDGLL IRATYAQVFALYRLMHDSKLLEPKATTLLDMLKHQPEHPIKFDVVDDVDLFDNDHDDE >gi|256541368|gb|ACPV01000106.1| GENE 6 5462 - 6025 585 187 aa, chain + ## HITS:1 COG:lin0816 KEGG:ns NR:ns ## COG: lin0816 COG0454 # Protein_GI_number: 16799890 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 1 185 1 185 185 111 31.0 8e-25 MIRRARKTDFPFVYPILKQIFDEMQMKSIESLPEDQFYSLMKLGFISEDYRYSYRRIWVA EDHGKVTGILDMYPYKDQKIIDVVLRHNYANAGLPISTVIFDDQEAWPHEWYIDALAVHP DHWGEHIASRLMDEAGQVALAHGYHIISLNVDKENPRAQALYKHKGYEIEKSMTIGDRAY DHMIKKI >gi|256541368|gb|ACPV01000106.1| GENE 7 6264 - 6797 703 177 aa, chain + ## HITS:1 COG:lin0251_2 KEGG:ns NR:ns ## COG: lin0251_2 COG0634 # Protein_GI_number: 16799328 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Listeria innocua # 1 177 1 178 179 167 48.0 1e-41 MNNDIEKILFDQAQLDKRMDEMAAELNQKYEGKQPIVIPVLNGAMIFASDMIKRLNFKLT VDPIKASSYAGTESTGKVKITQDIKSDVKDQPVIFMEDIIDTGRTLQALSEVMKDRGAAS VEVVAMLDKPTTRVVDFHADYYGFQAPDAFLVGYGLDYNGLYRNLPYVGILKRKIYA >gi|256541368|gb|ACPV01000106.1| GENE 8 6823 - 7365 251 180 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01715 NR:ns ## KEGG: LCRIS_01715 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 180 1 180 180 322 99.0 5e-87 MYFTTTRRKTRKDRIHIQFFAQALKKDLSQGTVYKYSVQRFCEAANICRGTFYRNFKNLN DLFSQVLQFEINSCFNNPQSSTLHKKAHNLLIEIETNATYYRNVHSLASSQIRTQVDQAL FREMQKLLFNSNLSNKHIQSISSLILIRILDWIAHDYQDNVITVYTDVECLFLHHIKKSC >gi|256541368|gb|ACPV01000106.1| GENE 9 7822 - 8007 76 61 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01714 NR:ns ## KEGG: LCRIS_01714 # Name: not_defined # Def: membrane protein # Organism: L.crispatus # Pathway: not_defined # 8 61 224 277 277 112 100.0 3e-24 MTHLDTLHAGDLLGCRTKSYDAKTKYFGISFSGLKGDQSKVSVHMMGVAKCYIQNYRKFN H >gi|256541368|gb|ACPV01000106.1| GENE 10 7976 - 8647 763 223 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01714 NR:ns ## KEGG: LCRIS_01714 # Name: not_defined # Def: membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 220 1 220 277 388 99.0 1e-107 MTKNVKLLSLIGIAAALAGGSVAISNNNNSTVQAASITLPAGYTKSAIIKWNQTGKASKA LIDASKKGMKENTNSDAGSDNTLVNVTKLTASQQKELSQYTLSLINSARHQLGKQGWTYK RGALHFANRVANEYYSHNRSCWDADHYVTGIERAAKASGLNSKVGQVYEDEAGLPISSTY NTNLRPMSVLKNQIYFNVKQMLFGGFAGSDSQMNDSSRYTTRW >gi|256541368|gb|ACPV01000106.1| GENE 11 9467 - 10804 1736 445 aa, chain + ## HITS:1 COG:CAC0533 KEGG:ns NR:ns ## COG: CAC0533 COG1486 # Protein_GI_number: 15893823 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Clostridium acetobutylicum # 4 444 2 440 441 533 57.0 1e-151 MDGKKYSVVIAGGGSTFTPGFVLDLIKSQDKFPLRQLKFYDNDAERQEKIAKAVEIIMKE RAPQIKFSYTTDPKEAFTDVDFVMGSIRVGKYHMRSLDEKIPLKYGVNGQETTGPGGMAY GLRSIPAILQIIDWMEEYSPNAWMINYSNTIAIVAEACRRLRPNAKVINICDMPIDDMDR MAAICGLDSWHDIDFNYYGLNHLGWWKEVRNKKTGEDLMPKLKEYVKEHGYWVGGDYDKD TEASWEATFKKVADEYKLEPETLPNNYMQYYYFPQYEVANADPKHTRTDEIREHRQKIVF GECERIVKVGTAKNNIWDISGLHSEYIVDICHAIAFNTHEKFLANCANNGAISNMDPDSI VEVPALFGADGIQPMATGKAGRFQRGLMMEQQTCEKLVVDAYVEHSYNKMLQAFALNKTV PDASVAKKILDDMIPVNAPYWPELK >gi|256541368|gb|ACPV01000106.1| GENE 12 10936 - 11709 626 257 aa, chain + ## HITS:1 COG:BS_yfiA KEGG:ns NR:ns ## COG: BS_yfiA COG1737 # Protein_GI_number: 16077886 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 243 1 234 254 81 24.0 2e-15 MDLETAVMKKKESFNETDKAIVSYLLKYPEAASQLSLLELAQKLYVSKSAIFRLSKKLGL SGFSELKFELSELATRKEQNVKNKQTLDFNTDLQKIIAETFKYFKGLNLQPFFADLDQAE TIYLYSTGWQQQIIAEYLAHNFFLIGKKAIILPSARDEVALLGRSARENDMLFVISFGGF NKTIIEELKKMDVVNTELKLVSLTSWQTGKLASLSDYSFFFKTTPFQFSKQNAVTFSSAY VLIDLIMNSYGRHCDLR >gi|256541368|gb|ACPV01000106.1| GENE 13 11721 - 12713 765 330 aa, chain + ## HITS:1 COG:BS_ansA KEGG:ns NR:ns ## COG: BS_ansA COG0252 # Protein_GI_number: 16079415 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Bacillus subtilis # 1 329 1 329 329 262 41.0 8e-70 MKKILLLSTGGTIASVASDAGLVPKETGEELIKMLGKLPYDIQVRDILQLDSSNIQPEEW KFIAENIYKYRNDYDGIVVSHGTDTMAYTASMLSFMLKNINIPVVLTGSQVPINVVLSDA HDNLRLAFAAAATCPPDVYLAFHNKVMLGCRSVKVRTTNFDAFESVNVPPVATVSSDGLV FNSEHFQREHDGQPTLNTKINSHVSLVKLFPGFDPNLLFAMVNSGCRGIVIEAYGLGGMN FIRRNMVAAIGKLIRQGIPVVASSQCLYERSDLTKYEVGREALLEGAISACDMTSESAIT KLMWALGQGMDVHQIADFFDTNVAGEVTLK >gi|256541368|gb|ACPV01000106.1| GENE 14 13015 - 13293 323 92 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01710 NR:ns ## KEGG: LCRIS_01710 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 92 6 97 97 145 95.0 4e-34 MDFEEARNKLQMIEEMLNRMPLIHGENDVFKVTADEMDDFLASVTPDMDGKQVTEQGKKI LHTCLQVLKLRQKDERLTPEQSSLLADIEQLN >gi|256541368|gb|ACPV01000106.1| GENE 15 13349 - 13747 420 132 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01709 NR:ns ## KEGG: LCRIS_01709 # Name: manX3 # Def: PTS system, IIA component # Organism: L.crispatus # Pathway: Fructose and mannose metabolism [PATH:lcr00051]; Amino sugar and nucleotide sugar metabolism [PATH:lcr00520]; Metabolic pathways [PATH:lcr01100]; Phosphotransferase system (PTS) [PATH:lcr02060] # 1 132 1 132 132 240 100.0 1e-62 MELLIATHEGLAAGLMSAHDMLAGKNDQILTIELNDTGIRDFKARFAKVMNKYQNSQILV LTDLKNGTPHLVASEYEDMYPERVRVISGVNLPMVLELSHKMINASLNESTEKAIQIGRS QIDVDQLAAAKV >gi|256541368|gb|ACPV01000106.1| GENE 16 13794 - 14903 1258 369 aa, chain - ## HITS:1 COG:CAC2137 KEGG:ns NR:ns ## COG: CAC2137 COG0474 # Protein_GI_number: 15895406 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Clostridium acetobutylicum # 1 337 485 823 845 296 45.0 4e-80 MIDPPRKEVAASVKTCREAGIRTIMITGDHKVTALAIAKKLNIYQTGDLAISGTELDQMS DAELDQAVEKATVFARVSPADKLRIIQSLKRNCEVTAMTGDGVNDSPALKAADIGVAMGV TGTDVAKDVADMILLDDSFTTIAHAIKEGRRVYRNIQKVIQFLLVGNIAEITTLFAATIF NWDAPLLAVHILWVNLATATLPALALGVDPASKNIMKHKPVKAGTLFEKDLVIRVITQGI FVALLTLTGYFIGKETGNQVVGQTMAFSILALAQMIRSFNQHSNTDPIWKRSSGNNPWLT VSFIISAFFMGIILFVPAMQDAFHITSLSAGQWLIVVTLALLSIAQVELVKGWAKFRNIF INDNNLIED >gi|256541368|gb|ACPV01000106.1| GENE 17 14924 - 16444 1156 506 aa, chain - ## HITS:1 COG:L2866 KEGG:ns NR:ns ## COG: L2866 COG0474 # Protein_GI_number: 15673348 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 7 491 2 495 878 374 43.0 1e-103 MDNHRQKPWAVEQSEVLTNTKTTETGLTEDEVRIRQQAGLNELAAKPLKTVIQMVKEQIF DPMIGILLVAALLSAMFGEYTEAIIIATIVVLNTIIGVVQEKKAQSSLAALCDISAPTAH VIRNGKELIIPAKELVVGDIVTLHDGDMVPADFRLIETANLKIQEASLTGESVPVEKDAA AVLNSDCALGDRINMAFSSSIVTYGRGQGVVTAIGMQTEMGAIAGMLEDQTEVQTPLKRK LAKAGMVLTTIGLIICSLVFAIGAFYGRPLLPQFLVAISLAISIIPEGLPATATIVMALG VKRMVKRNALIKKLPAVETLGNATVICSDKTGTLTLNKMTVTQAATNDFSQSHVVDQLAA NKTNQTLAYASALCNDASLNGEKEIGDPTEVALIPFAQKLGFNQSNLKKEFPRLFEQPFD SDRKRMTTLHKIDGQLTVFTKGATDEMLPLCTHIMTDNGVRKITPQDKKQIAHLSHQMQA DALRVLGFATKKWITYLKQMLIWKII >gi|256541368|gb|ACPV01000106.1| GENE 18 16624 - 17310 366 228 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01707 NR:ns ## KEGG: LCRIS_01707 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 228 1 228 228 401 97.0 1e-110 MEVNFDFVKNSSFKEAFPTAEKIHKLYTIDDYRDVISNSRLLLEILIKKIFKLENLSPYY TVHDGEHRNLRNNTHYLRNELDYPLSIMDLFDEIRCMGNAAVHDNQIEPDQKQAWHCICD LHDILVFLINSYDGQDLYYLRPDIAMEAQTDEDHYYVRQNKQPKIMKLHDHQNTKKKQSA SAPKKAKHVKHFSSKQHIEQTNSESQTKTTPSTKDNWLRKIKELFHHD >gi|256541368|gb|ACPV01000106.1| GENE 19 17451 - 18722 1147 423 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01706 NR:ns ## KEGG: LCRIS_01706 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 423 1 423 423 779 99.0 0 MKKHKKIWISGVIILLIGIAWLIGNFYYTKERQIDRIVAKMQDPKTELAQYVTASTPDMD VTDKSLKPLQNYFKEHHSAAKRLAYNLRHNRDHGEIRLIQDGRNFLLFPKYKLWIQVYRP QVKTNHANSTLTVNQKDYGEMEGGNQNYYQDLGMVFPGRYHILVKSKVNGRHLDADSIVN IWSDKTVDMKIKTATFQVRSVPNGTIYINDRKAGKLNQHGSYTFKDYPIAKRMEIYIKSK ADGQTIKSERVTDLSQSISSEFSNSEDDVTDYDGTAEYQGNGEKDVYQDAEGDYIVNPIW PGLIKVGDAAKLLYNTLKSPNADDFENGKENADYKKIAKQLKEWHKKKSIKKLSVKIKVL SVLPGKRNYSRINYEVTFIKKYKDKSKKKERLSYQNAVFHQKDGKQLIQTLGDCKLIKTK TSD >gi|256541368|gb|ACPV01000106.1| GENE 20 18865 - 19515 874 216 aa, chain - ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 4 212 7 216 224 130 35.0 2e-30 MKRIYIVRHGQTYINRYNKMQGWCDTPLTTPGIEGAEEAGKALSEVPFDIALSSDLKRAS DTCEIIMKYNANKDELQHIASPFFREQFYGYFEGMDSEMAWRMIGGSHGYGTRQEMFAHE SIDTIKDWIKEADPYHQAENAEEYWARLDDGFKLISQLDGAENILLVTHGFTIRSLWYRY GDHIPLVPGPKNASITIMTMSEKGEIKIPKWNLMHL >gi|256541368|gb|ACPV01000106.1| GENE 21 19576 - 20322 645 248 aa, chain - ## HITS:1 COG:SP0617 KEGG:ns NR:ns ## COG: SP0617 COG5549 # Protein_GI_number: 15900525 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted Zn-dependent protease # Organism: Streptococcus pneumoniae TIGR4 # 22 244 26 236 240 145 36.0 5e-35 MKTLTLETIILTYWGDIYMKRFFKLLRNVLLLALIALGVWTYQNNPNIRIATQDSLATLS YRINELLTNETTISPNNEKKTTNIKTDTDKTENDDSSDNRVWSNPEAKVYIDISNNAQLR SAAVNAMNAWNRTGAFTFHQINDKKDAQIVINTVDNSDTNAAGETATTYNPATGHLLKAT VNLNRYYLQNEWYGYSYNRIVNTAEHELGHAIGLNHTNNVSVMYPKGSIYTIQPQDIKTV KKIYHENN >gi|256541368|gb|ACPV01000106.1| GENE 22 20421 - 22727 2154 768 aa, chain + ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 5 762 3 766 774 503 37.0 1e-142 MATAKTEKNEKELEQKHLDNIMGQIKDREKTLKKSIKSAEGEARELNSHFFDDVKLDYDG YSTSMETALSIHQQQQLLSEREHAWQHSAKQLETVERLEKRPYFARVDFKEKNEDRTETI YIGLGSFADKDDHFLIYDWRAPISSIYYDGKLGKVSYNSPEGEITVDMTKKRQFMIEDGK IVNMFDTDESIGDQMLLEVLSEKSSTQMKSIVTTIQREQNKIIRNTKADLLFVQGAAGSG KTSAILQRIAFLLYRYRGNLTSSDVIMFSPNQLFNDYIKNVLPEMGEQNMVQMTYWQFVA RRLPGMEVENLFRQFEDQTADSNISKFKDSVNFFNLLTRYAEHLNKRGVIFKNIYFRDKK KPYFDKEKIKEIYYSFNENYKLANRIDATREELIKMLNRKITPETKKAWVAHAIEGMSQS ELNELYDRPDQEFESEAKEEAFLGRKIVLSALKGVHKRILHNHFLNMRAQYLSFLRAVPK MVDLSKWNIDENDWLAHVEEVKNNFKQHHIAMNDVSAYLYLYDMITGRRTDFEMRYAFID EIQDYTPFQLAYLKYNFPRAKFTMLGDLNQAIFTKDESRSLLKQISGLFDPEKTDVVQLT KSYRSTKELTNFTKQILRQGEKIEAFNRKGPKPIIWGRKNDDEAIDVLVNVLHNNEQNKR TTAVITKDLAAAKFVHEELAKKGENTTLIATANQRLVDGTLVVPSYLAKGLEFDAVVMWD ASKAAYHKLDETQLVYTITSRAMYKLDIIYTGEKSPLLDADPDTYEEK >gi|256541368|gb|ACPV01000106.1| GENE 23 23161 - 23808 508 215 aa, chain + ## HITS:1 COG:lin1851 KEGG:ns NR:ns ## COG: lin1851 COG0765 # Protein_GI_number: 16800918 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 3 215 1 213 213 243 65.0 2e-64 MSLKYIAEILPALLSGAGMTLSIFFWTLILATPLGILVSLGEKSKFKPLRWLVNFYVWIM RGTPLLLQLIFVFYGLPIIHIVFPRYQAALFAFVLNYAAYFAEIFRGGFQSIDEGQFEAA KVLRLSRWQTMTKIIIPQVIKIVLPSIGNEVINLVKDSSLVYVIGLGDLLRAGNVAMARD VTLVPLVLVGVIYLLLISICAFVLKKLEKYFSYYK >gi|256541368|gb|ACPV01000106.1| GENE 24 23822 - 24442 380 206 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 198 1 210 245 150 39 8e-36 MLEVKNLSKEFNGHRILRDISFTLKDGEIMTIVGPSGAGKTTLLRIIAGLETKDSGEILI DGKPYDSGKVGVVFQDYNLFPNLSVLQNITLAPTLVLKKSKTEAEQDARVLLKRLQMSGR EQQYPYELSGGQKQRVAIARALAMKPRILCYDEPTSALDPNLRKEVEKMILSLKKSGLTQ LIITHDLNFAENVADQMLKVRPLSED >gi|256541368|gb|ACPV01000106.1| GENE 25 24446 - 25261 948 271 aa, chain + ## HITS:1 COG:lin1849 KEGG:ns NR:ns ## COG: lin1849 COG0834 # Protein_GI_number: 16800916 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 1 263 1 264 271 244 48.0 2e-64 MKKWILGIVLALTLCLTGCQSVQKEANTQDTWNKIASKKQVVIGLDDSFVPMGFEKKNGQ LTGYDIDLAKAVFKQYGIKVSFQTIDWSMNVTELRNGTIDLLWNGYSITPERQKKVAFSK PYLRNRQVLVVKKDSDISSFKQMKNYELGMQTGSTAEQWYETKQDVLHAKKTVLYDTISN SFLDLNAGRIQGILLDEVYADYYIAHMAKSSEYKVIQNDRVPMDLFAVGMRKGDKTLRQK VNQGLAKLQKNGQLRKLNEKWFGRNNSWLGK >gi|256541368|gb|ACPV01000106.1| GENE 26 25263 - 25712 312 149 aa, chain + ## HITS:1 COG:L9876 KEGG:ns NR:ns ## COG: L9876 COG2153 # Protein_GI_number: 15672965 # Func_class: R General function prediction only # Function: Predicted acyltransferase # Organism: Lactococcus lactis # 9 144 8 145 149 70 31.0 1e-12 MKIDNFIFKKIDEMTAREFYCVERLRNTTFVAEQKITLPDLDDEDLIAVQVYLLNQKQTT ALATCRLFQEDGKWMLGRVAVSKEARGQQLGSKMITAVHKFLRQNKIDAVYCHAQMRVKP FYDSLSYQVVGKPFDEGGVEHAMMKRDLA >gi|256541368|gb|ACPV01000106.1| GENE 27 25709 - 26266 513 185 aa, chain - ## HITS:1 COG:L161059 KEGG:ns NR:ns ## COG: L161059 COG2755 # Protein_GI_number: 15673705 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Lactococcus lactis # 3 181 8 189 191 67 28.0 2e-11 MKKIILFGDSIFNGYRNGQNTNLVTNLFQHALINYAQVENISKSGATTVEGVDYLEQIPP EHDLVVVEYGNNDAATAWGISPESYEKNLAQILSAVGKVIVVGLCNPNPESDIFQYYGAE RLDLFNNIAQKVAKAHGAQFVDILPAMRNLTDKSTYYQADGQHLTDQGNEFLVNQIVPVI KKDLA >gi|256541368|gb|ACPV01000106.1| GENE 28 26326 - 27240 843 304 aa, chain + ## HITS:1 COG:L66222 KEGG:ns NR:ns ## COG: L66222 COG1072 # Protein_GI_number: 15673426 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Lactococcus lactis # 3 302 6 304 306 277 50.0 2e-74 MRNYTSFNRNEWAKLAPLDKVNITKEELADIKSLGDVIDLTDVHEIYTSLISYLHLVYQQ KKNAQKAQIKFLHKSFSPAPFIIGISGSVAVGKSTTARLLQLLLSRTYPELKVHLMTTDG FIYPNEELKRRNLMPRKGFPESYNMTLLSDFLRDVLSGKKDIVYPLYSQELSDIVPGEYG HVKNPDVLIIEGINTLQLPESGQVVTSDFFDFSIYIDAEESLIEKWYMQRFRKVLKLNKN KPDNFYYKMANGPLEDAIQLAEETWQMVNLVNLREYIAPTKERASLILHKTDGHLIDWIY LRHI >gi|256541368|gb|ACPV01000106.1| GENE 29 27358 - 27933 935 191 aa, chain + ## HITS:1 COG:SPy1821 KEGG:ns NR:ns ## COG: SPy1821 COG0231 # Protein_GI_number: 15675650 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Streptococcus pyogenes M1 GAS # 1 186 1 185 185 192 54.0 3e-49 MVQAINLKKGMIFSQDGKLIKVLKANHHKPGKGNTVMQMDLRDVKSGAVVHKTMRPTEKV DLVEVTKKKAQYLYGEGDTYTFMDTDTYDQYEVSADQLGDDVKFLMPNIMVDMDFTDDNK IIGIELPSTVEMTVKETQPEIKGATVAGGGKPATMETGLVVQVPDFIKNGEKLIIGTENG DYKSRADSQPR >gi|256541368|gb|ACPV01000106.1| GENE 30 27980 - 28381 95 133 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01695 NR:ns ## KEGG: LCRIS_01695 # Name: not_defined # Def: membrane protein # Organism: L.crispatus # Pathway: not_defined # 18 133 80 195 195 219 99.0 2e-56 MVLSIPALKYGDFRAFFIKSITLSLSKDIYVYDIVGYDDRKDCTIQVDATNNKILGQSTQ VLDYDYEKDASLNLKKTISRQEANEIALKEFSGGTPISWELTDDNNHSIWKVKMIHGEHK HTVKINARTKAVI >gi|256541368|gb|ACPV01000106.1| GENE 31 28478 - 29809 1075 443 aa, chain + ## HITS:1 COG:DR0178 KEGG:ns NR:ns ## COG: DR0178 COG0675 # Protein_GI_number: 15805214 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Deinococcus radiodurans # 15 431 9 374 409 174 29.0 5e-43 MKKMSSLAYHFGVKLRFYPSSKQKKIIKLNYDAQRFVYNSYVGRNRSNYHAKGYLAVRQY QAMPFAFSILNNYETRLAEEVVTNSELLAKPKNIRDTYSFLRVKEIDSLALANAIQNYQK AWNNYRKIGHGIPTFHKKRSDWSYQTNCQYPKQPEAFLDNGTARFTDAKHIKLPKLGVVR IAGFRKLIKERLLNHISTRIGTVTIKKTADEQFYLSMQLGSDIAFVKALPKTQSQLGIDL NLDNFLTDSNGSMVANPRFYRKAKKKLARAQRVLSRRQRRAKKEGRNLRLAKNYQKQRLS VARLHDKIRRQREDFLQVLSTALIKNHDLVVAEELRSKNLLKNHALSQAISDVGWRSFLN MLAYKADLYGKEFLTIDPKYTTQRCHQCGSIMGQNGYKKLTLKDREWTCPICQMHHIRDW NAAVNILEKGLGKWQNPKIKEAA >gi|256541368|gb|ACPV01000106.1| GENE 32 29977 - 30228 119 83 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01695 NR:ns ## KEGG: LCRIS_01695 # Name: not_defined # Def: membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 79 1 79 195 123 87.0 3e-27 MRKFFIIISSIITGLLIRIIGATIYLNSQSSKVSNFTIRTTNLTAQPKMISYSSNNLPQI NLSQDSAVQKFKSLYTHAVGQLP >gi|256541368|gb|ACPV01000106.1| GENE 33 30355 - 30750 477 131 aa, chain - ## HITS:1 COG:NMB0528 KEGG:ns NR:ns ## COG: NMB0528 COG3759 # Protein_GI_number: 15676435 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Neisseria meningitidis MC58 # 24 121 13 112 123 57 36.0 5e-09 MEIIKYGPYTLFTLIGTILTFIVAIEHIGICFLEMFGKPEQQAKAFDMDINFVKQEAAQV SLANQGIYNGMLGVILIIAFFIFPIPILFNVWKLILSLIVVVAIYGGFTATKKIFLVQML PALLALIFLFI >gi|256541368|gb|ACPV01000106.1| GENE 34 31051 - 32697 1734 548 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 3 548 2 549 549 348 36.0 2e-95 MAKLKRVLAGVVTISLGMLLAACGNGNSSSKSAAQSGTLNLSTTAPLDTIDISKSTGFGQ TGNVFESFYRLGKNGKPTAGIAKTGTVSKDGKTWTFKIRDSKWSNGDPIVAQNFVYSWRR SLNPKTASPYAYLFSGVKNADAIIAGKKSPNALGISAPDKKTVVVKLNRPIAYFKVLMAY PLFGPQNEKVVKKYGNRYATKAQYQVYSGPFKIKGWNGTNDTWSFVKNNDYWDKKAVKLN KIQYQVVKSNNTGYQMYQQGKLDLTPLSSEQVKNLKSNQDFTQYPYSLVRFLLYNFKDKN QINRAALNNKNIRLALSLSIDRDVVTKKVLGNGSTLPTGFVANDLASNPKTGEDFAKEQS VNNTVDYNSALAKKYWKKGLQEIGQKNLTFDVLSSNDEADSDQLTQYLQSQWTKELKGLK INITNIPEKSSDSRAQQGNFDIYLSHWGGDFNDPMTFMQIPMTGTSYNYGKWSNSTYDNL VKKAGNEDANNPEKRWNDLVKAAKIVNSNQAITPIYQQTTAYLQNKRVHGLIHNTAGTQW SYKYAYVD Prediction of potential genes in microbial genomes Time: Wed May 25 05:46:57 2011 Seq name: gi|256541367|gb|ACPV01000107.1| Lactobacillus crispatus 125-2-CHN cont1.107, whole genome shotgun sequence Length of sequence - 1565 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 42 - 1196 1024 ## gi|256844173|ref|ZP_05549660.1| predicted protein - Prom 1233 - 1292 6.3 Predicted protein(s) >gi|256541367|gb|ACPV01000107.1| GENE 1 42 - 1196 1024 384 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256844173|ref|ZP_05549660.1| ## NR: gi|256844173|ref|ZP_05549660.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 4 384 11 391 391 680 100.0 0 MRKQNFKKVVASAVLTIGLISPMAMTNQSSNFLLGTTNTVQAATRKIKLTHNAYIYNYRG HRVGRRVLHKHATHIYFSVKKIHGKKYYRIGHNRYVKAGNAKVVKKHSKKIIKETTSAVS KSNTSVNPTSTNTNSLGSPIFKVHVFAGGNDVYKSSSDNSWFGAKDFKDGIYNVYASKNG KYEIGQNLWISEDAGEKVNGTDTTNTSSVNNSSTSSNKVASSKKKHSNSTNQDKLYNSQD IQEVKKYFVKDLNDWREKQGLKPFTLVTSGWLADGANVRANDNVQLIHQTGDFDHVRPNG QPWYTAFAHPYELKGGALTSVSDGSNPEDCAYGAFYRLIYEDAESNWGHKKELQENLSSP KMAIGIAYFSPNNLVLDVVTADYD Prediction of potential genes in microbial genomes Time: Wed May 25 05:47:15 2011 Seq name: gi|256541366|gb|ACPV01000108.1| Lactobacillus crispatus 125-2-CHN cont1.108, whole genome shotgun sequence Length of sequence - 7204 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 4, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 2 - 61 4.1 1 1 Op 1 2/0.000 + CDS 81 - 536 621 ## COG1846 Transcriptional regulators 2 1 Op 2 8/0.000 + CDS 536 - 898 336 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 3 1 Op 3 . + CDS 861 - 1061 146 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 1063 - 1122 8.6 - Term 1055 - 1106 7.2 4 2 Op 1 . - CDS 1123 - 1734 677 ## COG3212 Predicted membrane protein - Prom 1758 - 1817 2.5 5 2 Op 2 . - CDS 1872 - 2300 556 ## LCRIS_01689 membrane protein - Prom 2351 - 2410 10.6 6 3 Op 1 10/0.000 - CDS 2419 - 2925 353 ## COG0642 Signal transduction histidine kinase 7 3 Op 2 . - CDS 2992 - 3213 285 ## COG0642 Signal transduction histidine kinase 8 3 Op 3 . - CDS 3217 - 3753 553 ## LCRIS_01688 sensor protein 9 3 Op 4 3/0.000 - CDS 3740 - 4459 566 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Term 4470 - 4502 2.3 10 3 Op 5 . - CDS 4517 - 5434 1173 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 5478 - 5537 6.7 + Prom 5473 - 5532 5.7 11 4 Tu 1 . + CDS 5556 - 7160 1286 ## COG1132 ABC-type multidrug transport system, ATPase and permease components Predicted protein(s) >gi|256541366|gb|ACPV01000108.1| GENE 1 81 - 536 621 151 aa, chain + ## HITS:1 COG:BS_yybA KEGG:ns NR:ns ## COG: BS_yybA COG1846 # Protein_GI_number: 16081123 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 4 151 3 150 150 145 55.0 2e-35 MKEDILRQIGTIARALDSIANIEFKEMQLNRGQYLYLVRIKENPGIISDHLAGMLNVDRT TTARSIKKLEQNQLIKKENDAENKKIKHLFVTDLGKRLAIKIEKENTYSNELVLSGLSLK QRAELTALLKVVEDNASENWRFVKNGGKREY >gi|256541366|gb|ACPV01000108.1| GENE 2 536 - 898 336 120 aa, chain + ## HITS:1 COG:lin0812 KEGG:ns NR:ns ## COG: lin0812 COG0454 # Protein_GI_number: 16799886 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 5 115 2 112 168 100 46.0 8e-22 MDYTIKPITTSDVEKLQKVSRETFKATFDPYTAPNDMARFLEEDYETVKLVKEIENPNSR FYFLMVQNEIAGYLKINVGDAQTEHLRENALEVERIYLRSSFQHRGLGNVLLDFAEKNGA >gi|256541366|gb|ACPV01000108.1| GENE 3 861 - 1061 146 66 aa, chain + ## HITS:1 COG:SP0580 KEGG:ns NR:ns ## COG: SP0580 COG0454 # Protein_GI_number: 15900490 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 18 63 123 168 169 60 60.0 9e-10 MCCLILRKKTAREEGKDYMWLGVYEKNVPAQHFYKRHGFSKVSQHTFQVGSDPQTDWLLV KKLTRN >gi|256541366|gb|ACPV01000108.1| GENE 4 1123 - 1734 677 203 aa, chain - ## HITS:1 COG:lin0040 KEGG:ns NR:ns ## COG: lin0040 COG3212 # Protein_GI_number: 16799119 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 3 203 2 203 203 75 29.0 8e-14 MKFTKLTSVALLSATLLTTVVACSKQNDTATTTQKSVTSSKVTHNSESAVSKQSRKDNIQ IKLSQQEAIDKFQKQFSGKQLKSIELSREGNHYLYEIEGFDSTNEYSVNINAETGQIGHV HSEKLDHDDRNPKALALRGAISRDDASRIAEEHVKGTSEEWKLEQDEDTGKTYWEVTVKN GHQETDVKINAHTREIISTEHDD >gi|256541366|gb|ACPV01000108.1| GENE 5 1872 - 2300 556 142 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01689 NR:ns ## KEGG: LCRIS_01689 # Name: not_defined # Def: membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 142 1 142 182 179 100.0 3e-44 MKTINLKKITITGAALLGLGTAAIATINLANETNVVQAVSSKIKVSQNTAVKKFKAKFKT AKIESISLDKENGRYVYDIEGFTSSKEYEMKINASTGKTISSHSEKLDRDERGKKALSLS KTISRSTATKIAQKRVAGKAVE >gi|256541366|gb|ACPV01000108.1| GENE 6 2419 - 2925 353 168 aa, chain - ## HITS:1 COG:L0128 KEGG:ns NR:ns ## COG: L0128 COG0642 # Protein_GI_number: 15672986 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Lactococcus lactis # 1 160 272 432 441 112 39.0 3e-25 MEGLINDLLALGRIERNTNLTQTNLVKIINEITAEIQAVYPHKIHTDMPQELFFLINPTD FRNIVHNLVENAAKYSPEHSDINISLTQKENQILFQVADHGIGIAAKNREKIFQRFYRED TSHSSKIKGSGLGLAIVKAEVDKYHGKIKVTDNAPQGTVFTVSLPLEK >gi|256541366|gb|ACPV01000108.1| GENE 7 2992 - 3213 285 73 aa, chain - ## HITS:1 COG:L0128 KEGG:ns NR:ns ## COG: L0128 COG0642 # Protein_GI_number: 15672986 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Lactococcus lactis # 8 73 182 248 441 74 56.0 5e-14 MNSEIQDIQKDGATTKITVPNQPLEIKQLAKSFNNLLTFQNKALQREQQFVSDASHELKT PIAAIRGHVNLIR >gi|256541366|gb|ACPV01000108.1| GENE 8 3217 - 3753 553 178 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01688 NR:ns ## KEGG: LCRIS_01688 # Name: not_defined # Def: sensor protein # Organism: L.crispatus # Pathway: not_defined # 1 178 1 178 444 343 99.0 1e-93 MKKADPKSTTQQLTYLFVKLFVAILILVNVAFLIISSAYIYYQAERQSEQVVRAVKDNLD SQYDWSAMLDAYLAKQDSDAITLTTPHGKTYYSEDAHETFKYINEQGHYQNLVYSNKHIY FLKDEQKHNFKINVALNIDRLFHLIIWLFCTMLIINLAAILISIPLIRRLSHKWSRPI >gi|256541366|gb|ACPV01000108.1| GENE 9 3740 - 4459 566 239 aa, chain - ## HITS:1 COG:L0129 KEGG:ns NR:ns ## COG: L0129 COG0745 # Protein_GI_number: 15672984 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Lactococcus lactis # 8 229 5 224 228 185 47.0 5e-47 MDEKDVKILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWMLP VYDGMTVLRRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVL RRLEKMRQQNDVPDTSLEFGPLKIDLLKHEFYCDTEQIYLTPKEFALITELMRDPEKVKS RDELLDTVWGYDFVGQTNTVDVYIRTIRNKIGNPYKKIIKTMRGLGYCLRKLDDNHEKS >gi|256541366|gb|ACPV01000108.1| GENE 10 4517 - 5434 1173 305 aa, chain - ## HITS:1 COG:SMc04033 KEGG:ns NR:ns ## COG: SMc04033 COG0596 # Protein_GI_number: 15966569 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sinorhizobium meliloti # 12 293 16 290 296 145 32.0 8e-35 MKTGTKIITLDNGYHLWTNTQGEGDIHLLALHGGPGGNHEYWEDTAEQLKKQGLNVQVTM YDQLGSLYSDQPDYSDPEIAKKYLTYEYFLDEVDEVREKLGLDNIYLIGQSWGGLLVQEY AVKYGQHLKGAIISSMVDEIDEYVASVNRRRQEVLPQTEIDFMHECEKNNDYDNQRYQDD VQILNINFVDRKQPSKLYHLKDIGGTAVYNAFQGDNEFVITGKLKDWHFRDQLHKIKVPT LLTFGENETMPISTAKIMQKKIPNSRLVTTPDGGHHHMVDNPDVYYKHLADFIREVENGT FKGEN >gi|256541366|gb|ACPV01000108.1| GENE 11 5556 - 7160 1286 534 aa, chain + ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 3 521 4 523 535 183 26.0 7e-46 MSLKYAKKSQIISYTILAAIKACNIVFVAYMVQIMLNVASSGSHDYLHLIRLAALTALGQ MCFMASNFVYETVKMGIIRDVNMTFKRTNLRYLVDQGEPDIKSGLSLMTNDLKQIETNRI TAQLDMIFQGLSFFGAITFAFYSSWQMTLVFLIATLAPALVQMITSPIITRKSKIWATTN ANYTQNVSDSLNGAQATKLYNVRTNIVTRAAGAAQAMENALRNMTLTQAWALELIYSAAE LFCFIVPCTIGGIMMLQGNLKVGTLVMMVDLALNFITPIVTLFNEFNQVKSTVPMWEKTQ RALHHVLKDDKQKIDHFDGMEVEQLSYVTGSDHKRIFENVNLTVKPGEKVLLMAPSGWGK TTLLRLLLGLRKPKDGKILINGTDVTGNWDAAHNYFSYVNQKPFMFDDTLRFNITLGRKV SDEHLKEVIHEAGLDELVKEQGLDKAVGENGSGLSGGQIQRVEIARALLSDRPILLADEA TSALDPNLSLGIHKTLLKNPRIAVIEVAHKISPEEKAMFDVIIHLDTHTIETKM Prediction of potential genes in microbial genomes Time: Wed May 25 05:47:22 2011 Seq name: gi|256541365|gb|ACPV01000109.1| Lactobacillus crispatus 125-2-CHN cont1.109, whole genome shotgun sequence Length of sequence - 4476 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 4, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 27 - 86 11.7 1 1 Tu 1 . + CDS 114 - 848 1002 ## COG2461 Uncharacterized conserved protein + Term 869 - 898 2.1 - Term 857 - 886 2.1 2 2 Op 1 . - CDS 892 - 1188 184 ## LBA1655 hypothetical protein 3 2 Op 2 . - CDS 1256 - 2188 683 ## LBA1654 putative surface protein 4 2 Op 3 . - CDS 2163 - 2876 553 ## LBA1654 putative surface protein 5 2 Op 4 . - CDS 2876 - 3127 148 ## LBA1654 putative surface protein - Prom 3162 - 3221 5.8 - Term 3159 - 3192 0.2 6 3 Tu 1 . - CDS 3239 - 3484 119 ## gi|227878388|ref|ZP_03996336.1| hypothetical protein HMPREF0506_1337 + Prom 3260 - 3319 7.8 7 4 Tu 1 . + CDS 3351 - 4476 936 ## LGG_01153 transposase IS4 family protein Predicted protein(s) >gi|256541365|gb|ACPV01000109.1| GENE 1 114 - 848 1002 244 aa, chain + ## HITS:1 COG:SP1472_2 KEGG:ns NR:ns ## COG: SP1472_2 COG2461 # Protein_GI_number: 15901322 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 18 221 4 207 227 102 34.0 7e-22 MAEPKWLKDMNADEYLKEDFDAKGKSKYTVEGIDKNDPDWLDKAAKKVHAAEGDDYVKLD AGLLTVNQLNWMLRNTIGKMTFVDDNNQFLWYNRPTDPNKKMLATPDQVGDTMRAVHPDV RDVIPNVKKVVHALRTKEAGHDDVYMPIPTGNLKKLVVDYYKRVEDDQGNYAGIYEWVKD LYPLVKYFCETTGQKLVVDDDATTGATYRRNSDPDAATGASTKAAEVKEEKHEEPDTTTG ASQH >gi|256541365|gb|ACPV01000109.1| GENE 2 892 - 1188 184 98 aa, chain - ## HITS:1 COG:no KEGG:LBA1655 NR:ns ## KEGG: LBA1655 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 25 98 20 93 96 63 44.0 2e-09 MLKNRLKIFQQILPTKATNTPKYQLPINYYDPEGSMVGTYSGINLAANETITHHQLKRFI NIHLPENYEVFPYFAYPKENITCENLPDEIMITIRLSN >gi|256541365|gb|ACPV01000109.1| GENE 3 1256 - 2188 683 310 aa, chain - ## HITS:1 COG:no KEGG:LBA1654 NR:ns ## KEGG: LBA1654 # Name: pspC # Def: putative surface protein # Organism: L.acidophilus # Pathway: not_defined # 8 290 345 655 685 220 53.0 5e-56 MLISRRVNSWIDVSNAIKDGSKDPIYVTIDAKYLSGNNKHEIAIKGIPADAETPIIILNV TNVQNGDLTVSTRLVLDYSDQTSINGVSEKPSQLNKLLWNFGTDVKNLTIEGDFHLGSIL ATNAHITANKNVDGNIIGNKITIKGETHRWDLTPPLVEVETPPEDPKDPPKDPEKPENPP KDPEPTPEPEPELKPEPTPDPEEESTPPLPEEVIPPTDNENSSDFKEEDTAPLPESVVEK QVKKNLPSPSTTEENIAPHAATIPTSTITEKETVLPQTGESQDKLMTIGLITTSVASLFA VLGTVIKKRN >gi|256541365|gb|ACPV01000109.1| GENE 4 2163 - 2876 553 237 aa, chain - ## HITS:1 COG:no KEGG:LBA1654 NR:ns ## KEGG: LBA1654 # Name: pspC # Def: putative surface protein # Organism: L.acidophilus # Pathway: not_defined # 3 233 111 341 685 186 48.0 8e-46 MPNSAEPVSPDQSITENDNQQEKTTVENSTEISEPVKDINKFDNDANVDKDETITVKKPT INVDTEKVEQGDETEKSKLEEIKKYIEDVAAKHPLGIAGIFHLFGNEIDGSAHIAGNVAT DKLSAGNFGTIQDATSNLTTCDIHYIGSIDHLNQIDGENKLVIFGPDVEYKSYENGSSIQ VKINGNWQKVGIPYNKTIRADQILDIQGELDKLSDKSDEWAKQTQTEGVIADFKEGK >gi|256541365|gb|ACPV01000109.1| GENE 5 2876 - 3127 148 83 aa, chain - ## HITS:1 COG:no KEGG:LBA1654 NR:ns ## KEGG: LBA1654 # Name: pspC # Def: putative surface protein # Organism: L.acidophilus # Pathway: not_defined # 1 67 1 73 685 62 56.0 6e-09 MFKTKKTQFAIRKLAQGASAVLLCFGILGGASAPIVPAATTDDPTKTVTESTINSENTSF NIETTTNASDKFASISKNGGVQR >gi|256541365|gb|ACPV01000109.1| GENE 6 3239 - 3484 119 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878388|ref|ZP_03996336.1| ## NR: gi|227878388|ref|ZP_03996336.1| hypothetical protein HMPREF0506_1337 [Lactobacillus crispatus JV-V01] # 35 81 1 47 47 95 97.0 1e-18 MVNETVDLRLKLTCLVNLARPIRLINEEIKDLVSFSVSICSILFIAQDLLYFLGRHLKYN AERACVFIFDKKKPRGAGKER >gi|256541365|gb|ACPV01000109.1| GENE 7 3351 - 4476 936 375 aa, chain + ## HITS:1 COG:no KEGG:LGG_01153 NR:ns ## KEGG: LGG_01153 # Name: is38 # Def: transposase IS4 family protein # Organism: L.rhamnosus # Pathway: not_defined # 78 375 1 297 374 320 53.0 4e-86 MNSIEQIDTENDTKSLISSFINLIGLAKLTKQVNFKRKSTVSLTMIISWLMSVHFARLSL FRAKDDKRFSVRTARNVLNDGRINWQKLLCLIAARLIGCLKPFIDKRRRLAFIVDDTLMA RSFSKKTELLAKVYDHDKHEYLNGYRGLTLGWSDGNTFLPVNFALMSTKTKKNMIGAAPI TADERSISGKRRNQAQRKMNDVTVELIRQALRLGVEAKYVLFDSWFSSPRMFWILKKIGL DGLGMIKKSSKIYYIYRHRRYSVKDLYDRLAASNIRKKKHYLYSSIVEAQYHGHSFLLKL VFVSNRGNKNKYLVLATTQTKLSPEEIIQLYGRRWQIETYFKTSKQYLALDKSQVQSYDG QCGYIAVTAITYDLL Prediction of potential genes in microbial genomes Time: Wed May 25 05:47:53 2011 Seq name: gi|256541364|gb|ACPV01000110.1| Lactobacillus crispatus 125-2-CHN cont1.110, whole genome shotgun sequence Length of sequence - 30523 bp Number of predicted genes - 28, with homology - 28 Number of transcription units - 11, operones - 7 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 2 - 61 2.6 1 1 Op 1 . + CDS 89 - 1315 833 ## COG3328 Transposase and inactivated derivatives 2 1 Op 2 . + CDS 1387 - 1746 257 ## LCRIS_01678 hypothetical protein 3 1 Op 3 . + CDS 1746 - 2393 772 ## COG2323 Predicted membrane protein 4 1 Op 4 . + CDS 2395 - 3216 780 ## COG0846 NAD-dependent protein deacetylases, SIR2 family 5 1 Op 5 . + CDS 3232 - 4188 967 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) 6 1 Op 6 . + CDS 4198 - 5052 867 ## LCRIS_01674 DNA-entry nuclease 7 1 Op 7 . + CDS 5109 - 6536 1433 ## COG4690 Dipeptidase + Term 6545 - 6575 1.2 + Prom 6688 - 6747 7.1 8 2 Op 1 10/0.000 + CDS 6792 - 7880 1146 ## COG3839 ABC-type sugar transport systems, ATPase components 9 2 Op 2 38/0.000 + CDS 7880 - 8746 894 ## COG1175 ABC-type sugar transport systems, permease components 10 2 Op 3 . + CDS 8750 - 9574 722 ## COG0395 ABC-type sugar transport system, permease component 11 2 Op 4 . + CDS 9558 - 10853 1570 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 12 2 Op 5 . + CDS 10907 - 12208 1776 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 12234 - 12267 2.2 + Prom 12238 - 12297 4.2 13 3 Op 1 . + CDS 12327 - 13244 569 ## COG0598 Mg2+ and Co2+ transporters 14 3 Op 2 . + CDS 13260 - 14204 844 ## LCRIS_01666 beta-lactamase + Term 14211 - 14248 2.4 + Prom 14216 - 14275 9.9 15 4 Op 1 . + CDS 14337 - 14912 578 ## LCRIS_01665 transcriptional regulator 16 4 Op 2 . + CDS 14917 - 18675 3973 ## COG2409 Predicted drug exporters of the RND superfamily + Term 18690 - 18724 2.0 + Prom 18700 - 18759 8.4 17 5 Tu 1 . + CDS 18789 - 19823 781 ## LCRIS_01663 hypothetical protein + Term 19827 - 19866 4.2 18 6 Tu 1 . - CDS 19873 - 21255 1498 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 21399 - 21458 6.5 + Prom 21321 - 21380 7.7 19 7 Tu 1 . + CDS 21417 - 21920 737 ## LCRIS_01660 deoxyribosyltransferase + Term 21926 - 21952 -1.0 - Term 21913 - 21939 -1.0 20 8 Op 1 . - CDS 21948 - 22808 718 ## LCRIS_01659 regulator 21 8 Op 2 . - CDS 22811 - 23605 762 ## COG0657 Esterase/lipase - Prom 23633 - 23692 4.7 + Prom 23678 - 23737 6.8 22 9 Op 1 . + CDS 23763 - 24368 457 ## COG0398 Uncharacterized conserved protein 23 9 Op 2 . + CDS 24368 - 24919 528 ## PROTEIN SUPPORTED gi|238852919|ref|ZP_04643320.1| acetyltransferase, including N-acetylase of ribosomal protein + Term 25084 - 25132 7.5 + Prom 24931 - 24990 1.9 24 10 Tu 1 . + CDS 25150 - 26457 1610 ## COG0172 Seryl-tRNA synthetase + Term 26483 - 26536 11.2 + Prom 26487 - 26546 6.3 25 11 Op 1 . + CDS 26659 - 27144 424 ## LCRIS_01654 mucus-binding protein 26 11 Op 2 . + CDS 27195 - 27539 171 ## LCRIS_01654 mucus-binding protein 27 11 Op 3 . + CDS 27626 - 29041 1409 ## LGAS_0143 adhesion exoprotein 28 11 Op 4 . + CDS 29054 - 30238 1493 ## LCRIS_01654 mucus-binding protein + Term 30264 - 30328 13.2 Predicted protein(s) >gi|256541364|gb|ACPV01000110.1| GENE 1 89 - 1315 833 408 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 17 408 1 391 391 382 47.0 1e-105 MIGLNKKNTYRKKNSFMNDFTKDLANALFNQDKINDLFRQKLQQAVNDLLESELTAFLGY NPYERDGWNTGNSRNGAYYRKVDTQFGQIEIKVPRDRNVEFHQHTMPDYKRHTDVLEQTV IKLYSKGVTTREIADLIEKMYGGYYSPAMVSNISKEMIPKVEAYHQRHLSDKFFCVYLDA TYIPLKRVTHEREAVYIAIGIKPNGHKEVIDYCIAPTENIEIWSEMLKGFKSRGLEQVEL FLSDGVVGMKEAICQSYPKAHFQRCLVHVMRNISAKMRVDDRKKALDEFKQIHTQSNKEM AVQVLHEFYQNWEKAYKNVVRDLRQVEPDLLTFYNYPPAIRASIYSTNMIESFNNRLKRK TKPKTEFPTEQSLDTFIGVQAMDYNDRYFNRIHKGFGQVRDTLESYFD >gi|256541364|gb|ACPV01000110.1| GENE 2 1387 - 1746 257 119 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01678 NR:ns ## KEGG: LCRIS_01678 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 119 31 149 149 172 99.0 5e-42 MIIFALLYLHNRFATKYRDLGIIALLFLLLFAGTQYEKYVQLNTQKSQAIQIVPFIKSIA KDENVSTSDVLVSSTVLTNGMIVRIDSKNIDYQLNLNDDRNTYTLTQAHVIDHKVEVIK >gi|256541364|gb|ACPV01000110.1| GENE 3 1746 - 2393 772 215 aa, chain + ## HITS:1 COG:L163025 KEGG:ns NR:ns ## COG: L163025 COG2323 # Protein_GI_number: 15674091 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 212 1 211 211 263 62.0 3e-70 MQLDYTQLFIKFALGILTLIIQINVFGKSNLAPTTALDQLQNYVLGGIIGGLIYNPSITI LQFFLVLIVWTLVVFILKFSRDHNNWIRGIIDGKPVQVIKNGKVLVGNCMKAGISANELM FKLRSRGIYSVEKIKNCIFEQNGQLTIIENDEANIRFPIISDGQANIDVLELIHKSEAWL QQQVEEAGYNSISDVFLGEYINGQLRLTGYSKGKR >gi|256541364|gb|ACPV01000110.1| GENE 4 2395 - 3216 780 273 aa, chain + ## HITS:1 COG:MYPU_4420 KEGG:ns NR:ns ## COG: MYPU_4420 COG0846 # Protein_GI_number: 15828913 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Mycoplasma pulmonis # 11 258 18 269 282 104 27.0 2e-22 MADLVTAKKWLKNANTVIVTAGNGMAKEEGLDILSEEGFDDQFGKIADKYDVHTIGDALD KRFDTWSEQWAFGSELINEYSLQYEPSETMLALKKLIRDKKYFIATSTFGHFFENAGFNE NRIFNAFGDWTKMQCSSGINHGQKDNREVVERFMTAIKNGNVTADLVPKCEDCNSPMELH MPLNANFFPDTDANTRFRWFLTGAEDKNVVILELGVDETSPQLLDPMVKLVQQFPNWHYI AADLADADLPADLKKRAMGFDSNSHEMLMNLIK >gi|256541364|gb|ACPV01000110.1| GENE 5 3232 - 4188 967 318 aa, chain + ## HITS:1 COG:lin1357 KEGG:ns NR:ns ## COG: lin1357 COG2176 # Protein_GI_number: 16800425 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Listeria innocua # 33 180 428 571 1444 98 36.0 2e-20 MSIYIKNGILHVTGAQDKLRKKGQEKPDFLTNYTMLDIETTGLYPYRDRITELGGVKVRN GQIVDQYTNLVKFSKNNSVPAFITKLNGITEAQIVKEGIPAEQAIREFREFIGDDVIIGY NVNFDLNFLYDLSQKYGLPVLDNDYVDVLRLARTYYPRERHNRLLDCMQRAGIAQVEAHH GLQDSLDTIKVYDDFAQHFTDDLLEKAQSKIKNIDLTTGELDYVDLGWHNPVQNKNIVLS GNIHMNEAEAGKMINNMGGQVDNSVLATTNYLIMGDQDFFRKDNQDLNAARDLIKNGAKI KRFSETFFLSMLDDWARS >gi|256541364|gb|ACPV01000110.1| GENE 6 4198 - 5052 867 284 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01674 NR:ns ## KEGG: LCRIS_01674 # Name: not_defined # Def: DNA-entry nuclease # Organism: L.crispatus # Pathway: not_defined # 1 284 1 284 284 501 99.0 1e-140 MTRRRRKKQGTVVSSLIVLIAILWGVFTKAGSDPNGSQFLRDFTGNNDEHVTNTISDASK AKTNYGGLSPTDYQKLANLNFKSGSRAYTEVNHDKSTLVKGAWKINRVIYSNLDSLNRTS RSNTAFLEKRNVANDSLRVRQYVEPIGWHYNHRNGTQIYNRGHLIAYSVSAGIDQSGNYD PRNQSGDQNNPKNLFTQSAYSNQKIQTIFEAKVRRALRQNKRVIYQATAVFRGNELMARG VNLQAVSTDGSLNFNVYLYNVQPGYVFNYNNGRAKVDRQMQVNE >gi|256541364|gb|ACPV01000110.1| GENE 7 5109 - 6536 1433 475 aa, chain + ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 2 473 7 474 474 363 42.0 1e-100 MKKDNCTAMLVGKDASIDGSTMIARDEDGYGGINEKVFVVNPARHYDEDYVSKYNGFKMH LEGDGCKWTAVPTADDSEGRWDEQGINEYNVAMSATETEATNARCLGHDPLVANGINEDS MVYITLPFVKTAREGVKRLGQLIEKYGTGESNGIAFSDNKEVWYLETGAGHQWVAARVPD DSYAICPNIMVIQNVDFDDPDNFMYSAGIREFVEKNHLNNSTDGSFSFRDIFGTKDEADA FYNTPRTWYGQKLFNPSIEQDPTSQEMPFTRVPENKIGVEDVQRFLTSHYNGTPYDPMDT FSSGSEKEQKMFRSIALDRNQESSILQIRNDVPAKMAAIQWINMGFYAYSPYVPFYTNIE DTPLNYKVADHMVDPDSSAYWLYKTLQVLVEPRYHQYIYEVNAYRDDCQSYGIGRIDLID EKAKNMEGRELIKYLTSANDETAGVITKKTKNLMSKLVRQALNSSKYQFERGDNL >gi|256541364|gb|ACPV01000110.1| GENE 8 6792 - 7880 1146 362 aa, chain + ## HITS:1 COG:mlr7224 KEGG:ns NR:ns ## COG: mlr7224 COG3839 # Protein_GI_number: 13476018 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Mesorhizobium loti # 7 325 4 327 381 264 42.0 2e-70 MNDEKFVEVKNLKKVYDNGHEAIKDVSFSVKKGDLVCLLGPSGCGKTTILNMLAGLLNPT SGDILFDGKSVVNVAPKDRQIGYVFQNYALYPHMTVLQNVMFPLTVGKQKMPKDEARKIA EKYMATTQITELADQKPGNLSGGQQQRVAIARALVQQPKILLMDEPLSNLDARLRLKIRE EIRALVKSVGITTLFVTHDQEEALSIGDKIILFNNGVIQQDDLGQNFYLEPNNYFVANFV GNPVIDNFNVKVNGGKITGSDFEINVDDLDKDRFKRDLTDGEYVLSVRPENILPVEEDGA VSAKVDDIELIGRERILKFTHDGVQDRSLVNLETPIKPGNNINLKMRLDRVFLFTKEGER VY >gi|256541364|gb|ACPV01000110.1| GENE 9 7880 - 8746 894 288 aa, chain + ## HITS:1 COG:TM0596 KEGG:ns NR:ns ## COG: TM0596 COG1175 # Protein_GI_number: 15643362 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Thermotoga maritima # 60 284 189 414 420 156 38.0 4e-38 MKSNQKKAWLFLAPTIIFVTFFSIYPILRAFVMSFQSGSLINLNWSGFSNYQYIFSDPEF WRAIKNTILYALISVPVALAISIMLAWFIFSRIKHKSFFETTFFMPYVTSTIAIGIVFRY IFNGDYGLLNFLLKAVHLPTPNWIDDPAMSLTTIIIFGVWTSLAFNIVILMGALRNIDPN YYTIADMYGATGTEKFWRITMPQLVPTIAFLLTMNIIAAFKIYTSVYALFNGQAGVGNSA TTAVFYIYNKFQIVGTPGVAMAATVVLFIIIMFVTFLQRKMMKKIGGQ >gi|256541364|gb|ACPV01000110.1| GENE 10 8750 - 9574 722 274 aa, chain + ## HITS:1 COG:TM0598 KEGG:ns NR:ns ## COG: TM0598 COG0395 # Protein_GI_number: 15643364 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Thermotoga maritima # 54 273 58 277 277 169 39.0 5e-42 MKKIRWGTLIAYIILAIFAIITVFPFIYMILGGLMSFRETTTIPPTIIPKHFEWSNYAKV FAQAPFARYFLNTFITASVTTIVSLFNALLGAFAMVNLKFKGKGVVQMVLLSLLMVPGEA IIFTNYNTIARMGLLNTYIGLVLPFLTSIFYMYYLQSYFGSISQTIYKAAMIDGASDWEY IWKILVPMSKGGLFTVALLSFISGWNSFLWPLLVTNEDSMRLLNNGLTSFASDAGSETQL QLAAATLTVLPILILYFIFRKQIIRGVVRNDLKG >gi|256541364|gb|ACPV01000110.1| GENE 11 9558 - 10853 1570 431 aa, chain + ## HITS:1 COG:PH0466 KEGG:ns NR:ns ## COG: PH0466 COG0595 # Protein_GI_number: 14590378 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Pyrococcus horikoshii # 9 428 4 511 514 103 25.0 5e-22 MTLKDKTTVTFYNGLTTIGGPMIEVAYNKSHVLFDLGEVYRPELKLPDESYQTLIKNKLI GDVPNFYDPKLTGKPIDTDRWEHAAAYISHLHLDHSKAMNFLAPEIPLYAGPITAHLLPA LNEKGDFLLPAAGHDRTYTRPIIAAEYKKPIKVGDIILEIYPSDHDAYGATGLLVKTPDK QIAYTGDIRLHGYHPDWVRDFMQAAKNSDMLIIEGTGVSWPEEKHDENSEEFTGPKNEVE LTEEIVRLQKANPERQITFNTYPTNVERLLRIIADSPRKVVLHAQRAHLIKESLDEDYPY YYMPNEEHYADLKPELEVSYDELLADNHKYMWQVVTDYDKLQKGGLYIHSNAEPLGDFDP AYKPFVEALANNDIEYKALRCSGHADEKELKEIIAGVQPAVLVPVHTLHPELEENPYGER ILPKRGQTITL >gi|256541364|gb|ACPV01000110.1| GENE 12 10907 - 12208 1776 433 aa, chain + ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 44 433 19 415 419 172 30.0 1e-42 MKFSKKLTMAAVATLALVGTAACSKSGNSSSSSSEKIPSKITKKTTVVFWNAMPGVQGST LKQLTNEFEKKNPKITVKLENQGAYNDLQAKINSTLQSPNNLPTITQAYPGWLWNAAQNK MLVNMTPYINNKNVGWGSAKASDIRTELLDGAKIKGTQYGIPFNKSIETLTYNKTMFKKY GIKKVPTTMEELKDVSETIYKKSNHKVVGAGFDSLSNYYTLGMKDEGVNFTDKINFSGST SKKVLNFYADGIKKGYFRVAGSEHYLSGPFANEKVAMFVGTSAGEGFVKQGVGNKFTYDV APRPGKYTMQQGTDIYMFNHASAEQKAAAFKYIKFLVSKSSQIKWANATGYIPVNTSAIE SSEYKNNKSIKLPAKLEDAMKNLYSVPVAKNSNAAYNQLNSILQNIFAAAQKGQNTNSQI NTGKQKFDAAWKQ >gi|256541364|gb|ACPV01000110.1| GENE 13 12327 - 13244 569 305 aa, chain + ## HITS:1 COG:lin0568 KEGG:ns NR:ns ## COG: lin0568 COG0598 # Protein_GI_number: 16799643 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Listeria innocua # 13 301 12 298 301 140 33.0 2e-33 MIRQQNFPVRTKYKWYDINNLSEEDSERLQQDFNFTPDIISYISDRHERPHYDYDVHTKS HLLVYDVPIWPTNTIKHFTSHPITFLVVGENIFTFHTESTSYVFDEFNDEHMRERLSEAK DVTELLMLFFLYSSQYFQRAVTQLDVERNSLDQKLSDDINNKDLVELSNIEKSLVYLSSS IQTDLIMLHGLNHSKLDFTKEASERLDDVLIESSQSAEMVQISQQVTKTLSATSNNMMNN NLNDTMQFLTVWSLVLTIPTILTGFYGMNVSLPILKNSFDWVLIIILMVVLMVWLVILMK RHHFF >gi|256541364|gb|ACPV01000110.1| GENE 14 13260 - 14204 844 314 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01666 NR:ns ## KEGG: LCRIS_01666 # Name: penP # Def: beta-lactamase # Organism: L.crispatus # Pathway: not_defined # 1 314 1 314 314 496 98.0 1e-139 MKHKILIGSLIVTLFAFILYTSNIKRVENAQLKIVEPNNSKVAKNKKKTKEPKVKKLEKP KEPKVNSIEYSNHVKAQKGSNQKLVKQIKKVMGIDDSFQVVAQDLTNSSHFAVVSNTNKA HDAGKTMRLFLLIALYEQEQKGKMGSRTAIKISKKDKAKGDKMFQIGITYGVSYLRSAML KGNKTATSALTRKIGVNNIDQVAKKMGATQTKVNSNMTGQTTANDLAKTMIGLYQGRVLN RQYASRVLATLAKERPSLVSGLSGGIYAIGDDDFAVAIVQTNGRAYCMSVWSTQHKNFNK LGKTVNAWFIKKHK >gi|256541364|gb|ACPV01000110.1| GENE 15 14337 - 14912 578 191 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01665 NR:ns ## KEGG: LCRIS_01665 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 191 1 191 191 350 99.0 1e-95 MAQKRNLDLDKIIDQATELISKKGLTATTLPALAKALDVRSQSLYHYVSGRKQLLSLVGA RRIKILRHELMNDLIGMSGRDALLKFADVVRDFLLSDPALSSILYHLNEYPKDAAINQEI LDLIKMGERLNFKKESVISFHALIGAVLGYVFLDKSKSFGDETEDESNRNYHEMILRLVE PVPDLQQIGRK >gi|256541364|gb|ACPV01000110.1| GENE 16 14917 - 18675 3973 1252 aa, chain + ## HITS:1 COG:lin1189 KEGG:ns NR:ns ## COG: lin1189 COG2409 # Protein_GI_number: 16800258 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Listeria innocua # 12 713 12 737 1066 357 31.0 1e-97 MQKFLKNHVFELIAWILILIISVVALPNITQLTNDHSNITLPSNVQSNVAQSIENNWGSK KKNTYAVALVFNKKSGKLTDADKQAINNTLDKFTNDKGKYGIKDSLLPDSNIATRKKLQS KDGTTWVAQFNVAKSHGTIEKVYNEMNKAAKTQGLRTYVTGADVLQHDFSASIQEGIKKT EAITVVFIFIVLVIVFKSPIVPLISLLTVGVSFLTSFSIVTNLVKSANFPFSNFTQVFMV IVLFGIGTDYNILLYDKFKENLGKGMDKYKAMHDALRNAGKTILYSGSSILIGFTALSLA KFSVYQSAVGVAVGVAVLLVVLLTLNPFFMATLGKKMFWPVKKFTGESDDKLWHGISSAT LKHPIIYLVVLAVVVVPFMLMYSGHLNYDDTDEIADSVPSKQGLLIVQKHFSKGMAEPSY LYIQSKHRLDNEENLKLIDQVTKQLQASKDVSFATSVTEPYGEPIDMLYVNNQLNTVNDG VDQARSGLGKLSKGSNKVANGANSLKDGADQLQNGTSRLQSGASQLVSGTNRLQNGASQL QSGATRLQSGSGQLVSGADRLRSGASQLQSGAVRLQTGAGRLESGTHALQSGATSLVSGA NRLKNGANSLQSGTQQMVNQLQQLSSQLSTQLSGSNKQQLAQLQTALPEINSSIQQLNQA IGGGVDTSSLTNSLATVQKQAADLENSLKELQSAAGNAGSSSVNQSEIQSAISSAVSSAV QSVPADQRQAAQAAATKAATQAVESVVQKAQSGANTDKMKSAMANATSAAQGLQSSMAAM QQSNLMTQLQTLKAQVNALAQASNKALPGAARALNQLSSGLTQVQSAASQGVAGAQKLNN GAGQLSNGLGSLSSGASRLGAGVNQVNNGAGRLNNGLGTLASGAGTLNNGLGTLANGAGT LNNGLGTLATGAGQLNSGIGQLAGQAPQLISGISQLNTGAGQLSAGAGKLASKVPQLTSG IDTVNSGLGQGETYLRGLGSSAAADTFYIPKEFLKNDMFKKSMDVYLSPDKKSAQIIVVF DSNPSATEATKKSQELSAMAKKSFQGTALKNAKVAMGGQSSKIEDTKTVASGDFLRTAAI MLIGIGIALMFVTRSLLQPIYILGTLLIAYLCSLSINQWIVKAVLGKSMLTWNTPFFSFI MLIALGVDYSIFLMTRYRELESEGYTTPSSRILKACAIIGTVVVSAAIILGGTFAALIPS GIPTLIEVALAVDIGLLILVFILPITMSAATKLTYEGIDLNKFAKRRKKKNN >gi|256541364|gb|ACPV01000110.1| GENE 17 18789 - 19823 781 344 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01663 NR:ns ## KEGG: LCRIS_01663 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 337 1 337 338 598 92.0 1e-169 MTTCPNCGHEISETDDVCPNCGFNLKKYRDDFFTDQHQKAKFEEPDEGEKIISRAAYREE FIPEKQNSTVQRMIAWVRKNATLVFLLGVLLLILMSFSRAAGWTSFLALMVWLYIVCDRK DKIEQYTVDKRLTQKIDRIGSEVFNRVDARGSKVKEKNREFVQKHPRVENRVREIKDGRK HHFNYVQISVILTALVSLIVLFTDSGASFYTQRMSISNVLFSLAGRLLSSGATSWYALIL YVVWLLLFLFPIFIIYNVLKNTKASQTLAFFLSLIESVFLIYIVFQMSSAVGASTGVLAQ LTSQLMSYAVSLGASAYFMILASVLTTILAGYNLFKKNKTKNEQ >gi|256541364|gb|ACPV01000110.1| GENE 18 19873 - 21255 1498 460 aa, chain - ## HITS:1 COG:SPy1067 KEGG:ns NR:ns ## COG: SPy1067 COG1012 # Protein_GI_number: 15675059 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 4 459 3 459 465 491 53.0 1e-139 MSRYQSINPYTNEEFASYDNPTAKQIDDAINLAHALYKKWRHEAPETRARQLHKVADTLR EHEDDLAKMMTLEMGKLLRESREEVELCASICDYYAKNGVKMLAPTPIESGLGNAYYLKQ STDVIMACEPWNFPLYQVIRVFAPNFIVGNPILLKHAHNVPGSAALTAKIIKRAGAPEGS LINLYPTYDQLGKIIADPRIQGVALTGSERGGSSVAEAAGKNLKKSTMELGGNDAFIVLD DADPQVLRNVLGDARTYNDGQVCTSSKRIIVEKSHYEEVLHTLKNIFSSLKAGDPLEADT TLPPMNSERAKEKLEAQVKKAVDAGAKIFYQYPEIDSKGAFFRPVILTNIDKENPIYDEE LFGTVAEVFVVDDDDDAIQLANDSSYGLGSSVISNDIERAQNVAAQIETGMTVINGRWIT SGELPFGGVKKSGYGRELSELGMMAFVNEHLVIDVTKNNQ >gi|256541364|gb|ACPV01000110.1| GENE 19 21417 - 21920 737 167 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01660 NR:ns ## KEGG: LCRIS_01660 # Name: not_defined # Def: deoxyribosyltransferase # Organism: L.crispatus # Pathway: not_defined # 1 167 1 167 167 301 86.0 5e-81 MTESVSTAKIYLGSPFYNDQQRARVDQARALLEQNPTVVRVHFPFDQNFVDPDEKNPEIG GIRSMTWRLATYNNDLEGIVNATCGVFLYDMDNIDDGSAFEIGFIRALHKPVVLVPFTTD PNKDKVMNLMLAQGVTTIIDGNTELEQLARYDFNAVPAKPVTGYKII >gi|256541364|gb|ACPV01000110.1| GENE 20 21948 - 22808 718 286 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01659 NR:ns ## KEGG: LCRIS_01659 # Name: not_defined # Def: regulator # Organism: L.crispatus # Pathway: not_defined # 1 285 1 285 286 530 97.0 1e-149 MINIQKFVQVRKKLKLSQTELCQGICTQSTLSKFENNGQVPSFKILKQLCERMDIDVSDI MDSSEHKYIAHILFEADFAFINFDYSKIFTLLSQINPEVDLKRQTNRIHYHYLRGQYALR SDRNQMSALFYFNNILTTQELPENDIYRLLALNGCSQIYAKQGETEKAEHYYSQVLKNIM DVKIDNILTTMHALSILCDAGEFYGERKMYRESNALLRYAYKIGAEKHVIFYMARILLRQ GMNDIDQSKKKAIAIQHLHDACAFARINRNTITLNQAKKLLKQLNG >gi|256541364|gb|ACPV01000110.1| GENE 21 22811 - 23605 762 264 aa, chain - ## HITS:1 COG:L141530 KEGG:ns NR:ns ## COG: L141530 COG0657 # Protein_GI_number: 15673289 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Lactococcus lactis # 10 260 6 257 257 77 27.0 4e-14 MVVIKNDIVYDKTKELKTDIYYPNDTSSNTKILIFWHGGGWFRGNKESVKNLGIRFANAG FMTFIPDYSLAPKYHFPAAHEDALHFVDWLLNSEYTDQDDIKNIVQIGASVGGEMAIEVA GKYGFPTVTWSAPVEYSNWIKDHQDTKASPDAANDFGITDPEKIRQSFYKHFTLTYTGTE DEAVLQKLDAKSFDYSHLKQLMMINSADELTPLATVLDFVKFLADKNLSVQLLVIPGHGH AMAYGPDYVDESLDFLYQTIKRQN >gi|256541364|gb|ACPV01000110.1| GENE 22 23763 - 24368 457 201 aa, chain + ## HITS:1 COG:L114884 KEGG:ns NR:ns ## COG: L114884 COG0398 # Protein_GI_number: 15672877 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 9 195 10 197 201 149 44.0 2e-36 MHLSTKASRKLINIATIVCGVAIVLLVIYWYRLGIFTDQAKMRAYLANKQIVGPIIFVLI QIVQVVIPIIPGGVSLLGGVVFFGPVAGFIYNYVGICIGSIINFFLARHYGRPFILHIVS EETLDKYMKWTENQNKFNWFFALCILAPAAPDDVLCLLAGLTKMKFWTYFWIIILCKPWT IAAYSIGLQFGAKWLLKLMGN >gi|256541364|gb|ACPV01000110.1| GENE 23 24368 - 24919 528 183 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238852919|ref|ZP_04643320.1| acetyltransferase, including N-acetylase of ribosomal protein [Lactobacillus gasseri 202-4] # 1 183 1 184 184 207 55 5e-53 MLESKRIYLRPFEEKDAQQLLKWGGNPRYHKMAGFEEYRNLTEAVNGVKQYMSRPESYVV CLRKNNEVIGLVELYERGLDEKSGLLKTKEVGFLLDQSFEGHGYMTEALRLILTYAFKKK KQVEVWAGTFADNEKSQKLLKILGFQYVYTVDYTQVSALFSFKEKYYLLKKEEWLKINAN TKS >gi|256541364|gb|ACPV01000110.1| GENE 24 25150 - 26457 1610 435 aa, chain + ## HITS:1 COG:L150515 KEGG:ns NR:ns ## COG: L150515 COG0172 # Protein_GI_number: 15673694 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Lactococcus lactis # 1 428 1 422 423 558 64.0 1e-159 MLDIKVIRENLDWSKKKLATRGIKPEELDELVEIDTKRRKDLTKSEQLKAKRNDVSKQIA EKKRNKEDASDAIAAMREVGKEIKDLDKEVAELTEKQNYILLRLPNFPADSDPIGPDDSY NEEVRKWHPTTEFNFKPKAHWDIGTDLGILDWDRASKVSGARFVYYIGAGALLERAVFNF FLDENTKEGYTEIIPPYLVNDASMQGTGQFPKFHEDVYTIVDNDDPDKPRDLTLIPTAEV PLVNYFRNEIIHENKLPINVTALSPAFRSEAGSAGRDTRGLIRMHEFRKVEMVKVCKPDE SWDELEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTYDLEVWMPAQDKYREISSCS NCTDFQARRAQIRYRDEDGKLHLAHTLNGSGLAVGRCVAAILENYQNEDGSVTVPDVLVP YMNGMKKITKESGLI >gi|256541364|gb|ACPV01000110.1| GENE 25 26659 - 27144 424 161 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01654 NR:ns ## KEGG: LCRIS_01654 # Name: not_defined # Def: mucus-binding protein # Organism: L.crispatus # Pathway: not_defined # 1 147 1 143 3552 206 92.0 2e-52 MTFNKNDFEGKQRFSIRKLNIGVCSVLLSTLLWTMNTSQTVHADTTDPVETEEVESAKKT TTDTGNDQTTTAGKNDNDTTAQKEVSGTDPLTSKNSTEQNSTKQAEDKKATSPEDTKDVS TQNNKEVSYSAYNKSGDPGQQTNLFTQLGIRKIHLVRVRSL >gi|256541364|gb|ACPV01000110.1| GENE 26 27195 - 27539 171 114 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01654 NR:ns ## KEGG: LCRIS_01654 # Name: not_defined # Def: mucus-binding protein # Organism: L.crispatus # Pathway: not_defined # 1 104 545 648 3552 172 80.0 4e-42 MYIPVKQQARTVTAKYVIAGGDKNGQQFAPDSQIQVFYAQTGSLNVANNTITYGNWQWDQ TAGDSTTPGFKVIYGSWSLPKEAGQTWQVNVPDPGKDYVVVNIRMVKIVLIVLI >gi|256541364|gb|ACPV01000110.1| GENE 27 27626 - 29041 1409 471 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0143 NR:ns ## KEGG: LGAS_0143 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 1 364 797 1175 2823 413 65.0 1e-114 MDNIEKALGTNYAYPQVAADVTTKGTLTINQGEATVTLNSGDSKTYDAKQTLPSGLNLNK YNVTYDATVYSADGEAQTLKLTADDLQIVGNATNVGTYQVKLSQAGQEKLKQLTGNNGAN YKWTFKTTANYIVTAATADAKLNGSNQKTFDGTAVTTAQVNSNGQILVHFTFPGSTTEST YALQDGDYIWNAGSAPVNAGTYTITLNKQSILAHLQDALKKQVNANVTISADDLGGQASF TITPKAITDITISGSDQSKTYNGKSADLDVNGLKITANGTVTNTPLVNPGITASDFTWYD AAGKKLDGVPTDAGTYQAHLNANTLVALQKANPNYKLNISSKAKFTLDATLTIEFEDTQE GNKQVGQTITKSGIAGSTVDNLDLKLPENYELAPDQELPTSYTFGKALSQNLYIKLVHKT AIVDPTDSATNPTKDESWFKKNDLVKDVTRTINYEGLSEEQLAQISEDQKK >gi|256541364|gb|ACPV01000110.1| GENE 28 29054 - 30238 1493 394 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01654 NR:ns ## KEGG: LCRIS_01654 # Name: not_defined # Def: mucus-binding protein # Organism: L.crispatus # Pathway: not_defined # 2 394 3130 3552 3552 636 84.0 0 MRTAVYDLVTGKLVANSEGQWTAVDGKDTFAGFTPKEFAGYTTNPNKVEQVKVTGNDKDS EVTVTYTVNTQTGKMSYVDSDGKEVGQPPLSGKTGETVDVNPQVPAGWKIVSGQDIPKTV VATADGIPTVTVRVEHDTIIVTPETPPRDVPTGPVPGDPSKNYDHLGTLTKIPTRIITVI TPSGAKLIITQKVTFDKVTGKVTYSEWKVDGNTQWDAYTAPTFSGYTASQSKVAAEKVSV DTADSNIKITYKQDEVPTPEPEPQPKPKPNPEPKPDKPAKPNKESEKKHNHSKANKKGYD FNNNPKHEGMPTGRKKRANGPVKAADAESGKRTIGKTERKQLANKLNAKPKSVQDLLPQT GSEHKHTLGLIGTLLAGLGWISLLGVEKRKKKDE Prediction of potential genes in microbial genomes Time: Wed May 25 05:48:40 2011 Seq name: gi|256541363|gb|ACPV01000111.1| Lactobacillus crispatus 125-2-CHN cont1.111, whole genome shotgun sequence Length of sequence - 15092 bp Number of predicted genes - 18, with homology - 17 Number of transcription units - 5, operones - 3 average op.length - 5.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 7 - 42 -0.9 1 1 Tu 1 . - CDS 70 - 327 228 ## lhv_1640 transposase - Prom 382 - 441 7.3 + Prom 394 - 453 5.2 2 2 Op 1 . + CDS 539 - 973 308 ## LCRIS_00065 acetyltransferase 3 2 Op 2 . + CDS 888 - 1049 57 ## + Term 1126 - 1175 1.1 - Term 1085 - 1123 3.0 4 3 Op 1 . - CDS 1193 - 1414 318 ## COG4892 Predicted heme/steroid binding protein - Prom 1445 - 1504 5.2 - Term 1441 - 1470 0.2 5 3 Op 2 . - CDS 1507 - 2376 872 ## LCRIS_00067 phospho-beta-glycosidase 6 3 Op 3 5/0.000 - CDS 2373 - 3320 805 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 7 3 Op 4 . - CDS 3334 - 4287 891 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 8 3 Op 5 . - CDS 4305 - 5141 663 ## LCRIS_00070 lipopolysaccharide biosynthesis glycosyltransferase 9 3 Op 6 . - CDS 5158 - 5661 295 ## LCRIS_00071 1-acyl-sn-glycerol-3-phosphate acyltransferase 10 3 Op 7 . - CDS 5719 - 5931 240 ## LCRIS_00071 1-acyl-sn-glycerol-3-phosphate acyltransferase - TRNA 6099 - 6171 81.8 # Lys CTT 0 0 - Term 6044 - 6095 6.4 11 4 Tu 1 . - CDS 6304 - 6525 349 ## LCRIS_00072 hypothetical protein - Prom 6736 - 6795 9.0 - TRNA 6643 - 6715 81.8 # Lys CTT 0 0 12 5 Op 1 8/0.000 + CDS 6852 - 7568 1095 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 13 5 Op 2 . + CDS 7639 - 9492 1659 ## COG5002 Signal transduction histidine kinase 14 5 Op 3 . + CDS 9482 - 10834 1357 ## LCRIS_00075 hypothetical protein 15 5 Op 4 4/0.000 + CDS 10837 - 11661 835 ## COG4853 Uncharacterized protein conserved in bacteria 16 5 Op 5 3/0.000 + CDS 11674 - 12471 805 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 17 5 Op 6 1/0.000 + CDS 12551 - 13813 1658 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain + Term 13846 - 13891 5.5 + Prom 14239 - 14298 4.8 18 5 Op 7 . + CDS 14331 - 14810 322 ## COG1576 Uncharacterized conserved protein + Term 14817 - 14856 2.7 Predicted protein(s) >gi|256541363|gb|ACPV01000111.1| GENE 1 70 - 327 228 85 aa, chain - ## HITS:1 COG:no KEGG:lhv_1640 NR:ns ## KEGG: lhv_1640 # Name: not_defined # Def: transposase # Organism: L.helveticus # Pathway: not_defined # 1 50 1 50 425 73 64.0 3e-12 MSSVNDCIKFDLDIKDKNIVFYNNFYKFFNGVQYKVYEALLKQPTCPFCGFPAEKITYPS IPFRVQTPQSSLETLFKKISRLRKA >gi|256541363|gb|ACPV01000111.1| GENE 2 539 - 973 308 144 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00065 NR:ns ## KEGG: LCRIS_00065 # Name: not_defined # Def: acetyltransferase # Organism: L.crispatus # Pathway: not_defined # 1 144 1 144 144 277 100.0 8e-74 MDKNSDRLTLVPYFPNEKQTLKWYQDPKICKQVDNIDTVYDLTKLRRMYEYLSVHGWCYY IQYQGKLIGDCTLLKDGEISIVICKEYQNLHLGRKCVDKLVQLARIQKMTQVKAHIYDFN IQSKKMFTRMGFKEQQPDWYSYDL >gi|256541363|gb|ACPV01000111.1| GENE 3 888 - 1049 57 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTLIFKAKKCLQEWGLKSNNLTGTLMIYRSKIFMLPSNSYKQSVGVMSDKHSY >gi|256541363|gb|ACPV01000111.1| GENE 4 1193 - 1414 318 73 aa, chain - ## HITS:1 COG:CAP0144 KEGG:ns NR:ns ## COG: CAP0144 COG4892 # Protein_GI_number: 15004847 # Func_class: R General function prediction only # Function: Predicted heme/steroid binding protein # Organism: Clostridium acetobutylicum # 2 52 64 114 143 57 52.0 6e-09 MRKFTKETLSNYNGKNGRPAYIAFNGTVYYVTNNTHWLNGENNGIHAGCDVSLDLAQSPV LELAHINQVGIYN >gi|256541363|gb|ACPV01000111.1| GENE 5 1507 - 2376 872 289 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00067 NR:ns ## KEGG: LCRIS_00067 # Name: arbZ # Def: phospho-beta-glycosidase # Organism: L.crispatus # Pathway: not_defined # 1 289 1 289 289 577 99.0 1e-163 MIFGDNREAVIKNIKKAANERNFTAKVEIGDPQMSLDQRLKLVNDYWNKRNTFSSKLNNR IGHLLFGTLSRALAGSTEFVGLENLNNLPIGGAILTSNHYNQVDSLPMKLLANKMHHQLS IVIEDTNLMLPGFFRYLMNYVGTIPLVQSPSYIGNEFPKHLSAVLAKNNWVLIYPEQEMW WNYRKPRKLQRGAYYFAAKQNVPVISTFVEIKDLPKIEKKDPNFYETKYIVHVLPPIFPD VSLNANENAHKMMELDYRQKVAAYEKIYGKKLNYDFLDWDIAGWRGHLS >gi|256541363|gb|ACPV01000111.1| GENE 6 2373 - 3320 805 315 aa, chain - ## HITS:1 COG:HI0258 KEGG:ns NR:ns ## COG: HI0258 COG1442 # Protein_GI_number: 16272216 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Haemophilus influenzae # 2 224 38 250 330 82 25.0 8e-16 MTIPIFYSISDDFTKYAAVSLNSLVKHTDPNKDYTVYFLNQDLSSKHQKALSNLSSSNVH VKFFHIDNQLVQPIQNRKENFLRADFFTMSIFYRLFIPELFPEYDKVIYIDSDTIVNDDL AKLYNSELGDNLFAACTDSSIQYVDKMIKYIKNVLALDPKKYINSGMFVMNARAFRAEHF IDHFMTLLEKYHFDCIAPDQDYLNEIGEGRILHLNPRWDAMPNENTEPLTNPGLIHYNLF FKPWHFANVQYAQYFWDSAKQTQFFDELKNELNNYTDDERAADREKLDHMLAKEDKTEQD PNNWAKVKKREAVTL >gi|256541363|gb|ACPV01000111.1| GENE 7 3334 - 4287 891 317 aa, chain - ## HITS:1 COG:jhp0147 KEGG:ns NR:ns ## COG: jhp0147 COG1442 # Protein_GI_number: 15611217 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Helicobacter pylori J99 # 3 284 4 341 377 82 24.0 1e-15 MKTIPVFYTISDNYTPYAYVSIKSLIDHTDPKKDYTITLLVQQISDEHKKSLEDLSTDNI HVQIFHIDDDMVKPIHNTKENYLRAQFFTMSIFYRLFIPELFPQYDKAVYLDADTIICTD IAKMYEIDIADNMFASCPDLSIRYMPLLQKYIKECQGIFPAEKYINNGVILFNMKAFRDK KFVDKFYYLMNKYHFDNVDPDQAYMNEICEDKIYHLPKEWDAMPNESIPEIQDPKIVHYN LFFKPWHFADVQYGHYFWYVAKTTPYYDELKQQLDNFTDEDRQKARADLEWMAKKVDMIV KEPNTWAKVKQTESVKI >gi|256541363|gb|ACPV01000111.1| GENE 8 4305 - 5141 663 278 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00070 NR:ns ## KEGG: LCRIS_00070 # Name: arbX # Def: lipopolysaccharide biosynthesis glycosyltransferase # Organism: L.crispatus # Pathway: not_defined # 1 278 1 278 278 550 98.0 1e-155 MNILFCGDENAQDGVLISTLSLIKNSGAQELHLYILTMEAHSDERKYHPFSQHAADFLRS LVKKANPNSTVELIDCTKLFEQEPPTANMNTRFTPYAMLRLFADQLPQIPDRILYLDDDI VIRGDITTFYNEDITGIELVGVLDYWGRFFFHNLKTKRAFDYLNSGVLLLNMKKIKQTGL FDEVRHMMQVKQMFLPDQSAINKLAVAKRVAPRRYNEQYHLQKNTKIQHFTTSFRFWPYF HTQTVKPWDVDRVHSVLHLHEYDDLLNEYLKLRNNLKK >gi|256541363|gb|ACPV01000111.1| GENE 9 5158 - 5661 295 167 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00071 NR:ns ## KEGG: LCRIS_00071 # Name: arbV # Def: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: L.crispatus # Pathway: not_defined # 1 167 87 253 253 334 100.0 6e-91 MGDVFTSLTIFPIKNFYAIANQANWGIPFIGKYLVRYGGLPVGKNMKQSLKLIKAIQTVI KDKKGEILIYPEAHVWPYYTKIRPFDATSMHFPVKLNAPSFVMTKTYHKKWLSKRPSAVI YIDGPFYPDTNLSRKEAQNKLHDEIWQVMKQRAKNSDYEYCQYIQKK >gi|256541363|gb|ACPV01000111.1| GENE 10 5719 - 5931 240 70 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00071 NR:ns ## KEGG: LCRIS_00071 # Name: arbV # Def: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: L.crispatus # Pathway: not_defined # 5 70 1 66 253 140 98.0 1e-32 MEGKMKRIYYYQKTTDDVVDSHDQNFSLPDNYVILPNSLGARIWSTTARHLACTFGWVVF RFFDHVKVVG >gi|256541363|gb|ACPV01000111.1| GENE 11 6304 - 6525 349 73 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00072 NR:ns ## KEGG: LCRIS_00072 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 73 1 73 73 127 100.0 9e-29 MNEAVFFNPGDAIASSHDFKEARRSAQIIKAERPTGRQIVIAKNDQSGVYAVYYADHMKQ DQQGTAYHIQDKL >gi|256541363|gb|ACPV01000111.1| GENE 12 6852 - 7568 1095 238 aa, chain + ## HITS:1 COG:lin0315 KEGG:ns NR:ns ## COG: lin0315 COG0745 # Protein_GI_number: 16799392 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 238 4 237 237 329 72.0 3e-90 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD GLEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR DIVKKAEAASQEETDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVM TREHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGYYVKQPSEE >gi|256541363|gb|ACPV01000111.1| GENE 13 7639 - 9492 1659 617 aa, chain + ## HITS:1 COG:lin0316 KEGG:ns NR:ns ## COG: lin0316 COG5002 # Protein_GI_number: 16799393 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 12 615 7 610 610 475 42.0 1e-133 MKKFKARLNSTFNSINTKIAIVFMLMLLATIEVIGAYFTRQLEQNSIENFQSSIQIQTIV SNQLANQLTSDNKNTNDRLNQIVNDYNNDAISEIIVVDNKDTIRAVSNLNDKSKIGQRIN NTDVKQVISTGHQINKVVDDHGNYMIQISPLTSGNGSNNTVGAVYVKASMQDVFNNLRQI SLTFLIASLIAALLGAFLSLVISRAITQPIEEMQKQALHIADGDYSSQVKIYSNDELGQL AKAFNTLSVRIERSQEESDSERRRLDSVLSHMSDGVLATDRHGNVSVVNHMALNFLNKKE DEVINKPIAEVLGLEDTSSQDLISSQKEIVITLDPGTRDEIILHASFSLIKRVTGFVSGS VCVLHDVTEQQKNEDSQRQFVSNVSHELRTPLTSLQAYIEALNEGAWKNPEIAPKFLEVT QQETSRMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKEKKKY TIKRELGSQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRMTQNQNHVILSISDQG LGIPRKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSSEGKGSTFY ISLPYEPMTEEDDWDEV >gi|256541363|gb|ACPV01000111.1| GENE 14 9482 - 10834 1357 450 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00075 NR:ns ## KEGG: LCRIS_00075 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 12 450 15 453 453 813 99.0 0 MKFKFKFGEFFLGLATLIVIVLSIVLWIFIMTSDQRFSNIGQQNQNNITKEQTRSHNFKS LYDLYIPTTSYGFANGNLCQLYDSKNNLTLEFTKEIKKAKATNKIKKIVDTRTKYEEYLN NPNYVQLVYPDEITFSLFNQLNNAANDNREFNRFFISQSNHWIYLGNDQTNEIYQVKIAG ANFDKLRKYARNAKSKYPVRLVRLKEGYSPFYIKTMNAKVYSYLTNHQSYSYFVSRLLGT SGVTSKTNKNGQTVYSLNYYTRLRVPDSNSGEHNYLYTHYEKNKIPNTTNRLLDSVYYVH QLGLTEQDLRFFDADGANVSYLNYIEGIPVFLNKHDLQVKTTFSTDSINVAFNSVNFQIP IPFDGQTKRLKPTQDVVDELVNHGLKQEDIQRIIVGFAEEKDSSHHSLINLIPTYYIKAY DEWKSLGEWEKQDVSTYREADQLTVNEGGK >gi|256541363|gb|ACPV01000111.1| GENE 15 10837 - 11661 835 274 aa, chain + ## HITS:1 COG:BH4024 KEGG:ns NR:ns ## COG: BH4024 COG4853 # Protein_GI_number: 15616586 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 266 1 262 262 60 22.0 3e-09 MDHKRIEWLFFVVFFLIDIYLGIEILRSPVNLSNADTTTRSVASIRNEMKSDNIDLPDKI SDAPDSGYYLATKNRDYLSGKVSSLTNVNARYSKSDNVLYGEPRQAVLLSKKPKEALEQI EDFKNDSKNIPYGKEFKYEPDMSSEDNYVFVQNSDYGEIYANSAQLNINVKDNQIINFTE TYMGQASPVRELQSTISAWRAVRAMYTDRELTNNSRVTQVKLGYSKLTEVRGSTILLPTW LVWVENKTTKNITMKRINAYTAQMLQSSTYNVEK >gi|256541363|gb|ACPV01000111.1| GENE 16 11674 - 12471 805 265 aa, chain + ## HITS:1 COG:L582 KEGG:ns NR:ns ## COG: L582 COG1235 # Protein_GI_number: 15672377 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Lactococcus lactis # 2 265 8 270 270 244 50.0 9e-65 MKVSVLASGSTGNTSLIVTGQHKILMDAGISGKKTKDLLAEVGVDINEIDMAFLSHDHTD HSGGLGVLMRRYPKIDAFANSGTWQYLLDTKKIGKLPAEQMNTIEPGKTKTFGDVDITAF ATSHDAAEPQYYVFTSGGKRVAFLTDTGYVSEEVEGTIEDADAYMMEFNYDNMMLRDGPY SWALKQRILSDVGHLSNDEAAQALVDVVTPKTKHIFLAHRSQHNNTEYLAHETAKEMLLE GDANLDDDVKIIDTEPNQPTKLVEI >gi|256541363|gb|ACPV01000111.1| GENE 17 12551 - 13813 1658 420 aa, chain + ## HITS:1 COG:SP2239 KEGG:ns NR:ns ## COG: SP2239 COG0265 # Protein_GI_number: 15902042 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Streptococcus pneumoniae TIGR4 # 70 417 50 384 393 238 47.0 1e-62 MVENQNNNNNLQQPRKKNTNGKIIATAAIVGVVGGLIGGGVSYYAADQMNNASVNNGAAQ TSVSSSSSKVSEKSAKTSGTMTTAYNDVKGAVVSVINLKRQSSSNSTNSLYNSLFGNDDS DDSSSSSSKGKLETYSEGSGVVYMKSNGKGYIVTNNHVISGSDAVQVMLANGKTVNAKVV GKDSTTDLAVLSIDAKYVTKTAEFGDSKSLQAGQTVIAVGSPLGSEYASTVTQGIISAPA RTISTSSGNQQTVIQTDAAINPGNSGGALVNSAGQVIGINSMKLAQSSDGTSVEGMGFAI PSNEVVTIVNELVKKGKITRPQLGVRVIALQGIPEGYRSRLKINSTLKSGIYIASVNKNS SAANAGMKSGDVITKVDGKKIDDVASLHSILYSHKVGDTVNVTVNRNGKDVNLKVKLEGN >gi|256541363|gb|ACPV01000111.1| GENE 18 14331 - 14810 322 159 aa, chain + ## HITS:1 COG:lin0321 KEGG:ns NR:ns ## COG: lin0321 COG1576 # Protein_GI_number: 16799398 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 159 1 159 159 192 66.0 2e-49 MNIKIVCVGKLKEKYFRDAIAEYEKRLSRFAKVSIVQVPDEKAPEKFSAAEDEKVKEIEG QRILSKIKDKEYVYVTAIKGKQRSSEEFAKEIQDLATYGHSDITFVIGGSLGTSDAVNKR GNDLISFGKLTMPHQLMRVVLIEQIYRAFMINSGSPYHK Prediction of potential genes in microbial genomes Time: Wed May 25 05:49:09 2011 Seq name: gi|256541362|gb|ACPV01000112.1| Lactobacillus crispatus 125-2-CHN cont1.112, whole genome shotgun sequence Length of sequence - 5496 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 3, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 8 - 67 2.2 1 1 Tu 1 . + CDS 232 - 555 141 ## LCRIS_00080 peptidase + Term 574 - 609 3.1 + Prom 592 - 651 5.9 2 2 Op 1 . + CDS 681 - 1808 1090 ## lhv_1466 hypothetical protein 3 2 Op 2 . + CDS 1817 - 2551 836 ## COG4990 Uncharacterized protein conserved in bacteria + Term 2733 - 2768 -0.0 4 3 Op 1 . - CDS 2575 - 3456 648 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 5 3 Op 2 . - CDS 3465 - 4118 498 ## LCRIS_00082 ABC transporter, permease protein 6 3 Op 3 . - CDS 4123 - 5475 1060 ## COG1122 ABC-type cobalt transport system, ATPase component Predicted protein(s) >gi|256541362|gb|ACPV01000112.1| GENE 1 232 - 555 141 107 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00080 NR:ns ## KEGG: LCRIS_00080 # Name: not_defined # Def: peptidase # Organism: L.crispatus # Pathway: not_defined # 1 78 1 78 181 130 92.0 2e-29 MGEKYYAYRAVTVNQSPITINGAKFYKLADRDAYIKVTNISGQGRVLKRNAYIYSTSKKR TTHNGAWKLYKGSTVTTYGGSYKFKNGKRYYRIGGPAKQYVRTSNFN >gi|256541362|gb|ACPV01000112.1| GENE 2 681 - 1808 1090 375 aa, chain + ## HITS:1 COG:no KEGG:lhv_1466 NR:ns ## KEGG: lhv_1466 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 100 354 1 256 265 424 82.0 1e-117 MRKRWTAAVIAALVAVSTAATTVKADDTNTTANTNETQVTATSDQTNSDSDKVTYNKADY LSANPKLVRIKHATTAYKDAALTKSAQSVKAGSHFLISRIVKSDNQVPILKTSDGLYLPA KKSLVTKVIAYQNPKGYHQVHYTQVKPYGKVGYNLYRGYEGIKTWKVMHRVGTWAGTNYY NQATYNAVKNFQRSHHLPATGNVNLATWEKMGFSKKSWYSIDSYVAPLKAYAWQGRKAHI EAMINQAYKYMGKPWLAGCSTSPSYGVDCSGLVMQGLYAGGISPVPTSSIGHAHPGNEWN SRNLWADKHLKRVPYSQRQCGDLVFYYQPGTHTIWHVAIYLGNNRVIESWPPRVMVQPIV NSQRNVIAGIKRPFI >gi|256541362|gb|ACPV01000112.1| GENE 3 1817 - 2551 836 244 aa, chain + ## HITS:1 COG:lin0018_2 KEGG:ns NR:ns ## COG: lin0018_2 COG4990 # Protein_GI_number: 16799097 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 80 244 2 164 164 131 46.0 1e-30 MKKYLAILLVSLGFSSLLLTRQTVHAADNDDAATTNQSAPKYTGLKKVGKHYVYFDQAGK QRFKNTKTKKAYYWINKSGKIVGINNYAKVISQLPEMPTGCEITAVTMMINFAGKKVTKQ QAAKIMPRSSNPNKGFIGSPYKKYPLGYWVAPNGVKPVVKHYLGRAQNMINCGLPAIKDK LINSHLVVVWVGMFDGLSNHAITLTGYHGKTIYYNDPWTGTKRKIKQEIFATHWALDAHR ALSY >gi|256541362|gb|ACPV01000112.1| GENE 4 2575 - 3456 648 293 aa, chain - ## HITS:1 COG:mll0601 KEGG:ns NR:ns ## COG: mll0601 COG0596 # Protein_GI_number: 13470803 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Mesorhizobium loti # 5 293 9 300 301 196 37.0 5e-50 MEIIEGKMPFMGYETYYRIVGRRSEKTPLVLLHGGPGSSHNYFEVLDKLAEIDNRRIIMY DQLGCGKSSIPDDHPELYTKETWVKELMALREHLALRKIHLLGQSWGGMLALIYMCDYHP VGIQSLILSSTLSSASLWSKELHRMIKYLPIEEQAAIHRAELTSNFNDPDYLKANEHFMN QHAIDMTKTWPECVMRKKCGGIVAYETAWGPNEYTPEGNLHDYEYTEKLGKIKIPTLITS GTDDLCTPYVAKTMQDQLAGSKWQLFENCGHMSFVEKKDEYVEMLRKWLDQHD >gi|256541362|gb|ACPV01000112.1| GENE 5 3465 - 4118 498 217 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00082 NR:ns ## KEGG: LCRIS_00082 # Name: cbiQ1 # Def: ABC transporter, permease protein # Organism: L.crispatus # Pathway: ABC transporters [PATH:lcr02010] # 1 217 1 217 217 332 98.0 4e-90 MNPSLKFLLAFIISLEISLKASLVTNLLVITFALVYLIITRFKIKELILLIILPFIAAFT IFATLFWFSPTPNAYYAWNLSTRIYVYTLTIACVTRNNTATDFARSLEQNLHLPSKFAYG VLAAINIIPQMKMAVKQIRTSAMMRGIYLSFWSPVLYFKAILVALNSADNLAQGMESHGY VEGQRRSTIIAIPLPARDWVIFFTLLILVNISLFLFK >gi|256541362|gb|ACPV01000112.1| GENE 6 4123 - 5475 1060 450 aa, chain - ## HITS:1 COG:SP0720 KEGG:ns NR:ns ## COG: SP0720 COG1122 # Protein_GI_number: 15900617 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 67 449 73 441 461 189 31.0 1e-47 MKVTVNNLTFSYEKEPIINHLNIEIPHGFSLLIGPTGCGKSTLLKIIAGLYPKYAGRLTG MVDLHGQKAAMMFQNAAEQFTMPTPREEIVFALENLQLDEGEYQTRLDQATAFTQIADLL DQKINTLSGGQQQRVALAVLIAMDVDLLLLDEPFASCDPKTRAFLIKKLAILAHNGKTII LSDHVLDDYEPVCDHLFEFTNNQEVIELNASKKIALFEQNKKLHERHYHFVLPNSEPIFT LKQVQIRQNKLLLKQNELNLHSGTTLITGANGVGKTSLFKVMTKMIPYTGNFAYLNKEIA QISARKYLTQVAQIFQKASDQFLAVTVKDELELSKKDRNLFFTEEKVNEWLDKLGLAKHL DQVVYSLSGGQQKKLQILLMLMTKHQVLLIDEPLSGLDHNSVKLVLELMRESQQKLHQTF FIISHQIDELAEFCDYHLIFADQRLKYVER Prediction of potential genes in microbial genomes Time: Wed May 25 05:49:22 2011 Seq name: gi|256541361|gb|ACPV01000113.1| Lactobacillus crispatus 125-2-CHN cont1.113, whole genome shotgun sequence Length of sequence - 6249 bp Number of predicted genes - 7, with homology - 6 Number of transcription units - 4, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 12 - 944 769 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 950 - 986 2.5 - Term 938 - 974 2.5 2 2 Op 1 3/0.000 - CDS 979 - 1875 892 ## COG0501 Zn-dependent protease with chaperone function 3 2 Op 2 . - CDS 1894 - 2454 620 ## COG1704 Uncharacterized conserved protein - Prom 2476 - 2535 9.8 4 3 Tu 1 . - CDS 2551 - 3657 1028 ## COG0471 Di- and tricarboxylate transporters - Prom 3698 - 3757 7.3 + Prom 3760 - 3819 10.0 5 4 Op 1 . + CDS 3858 - 4262 453 ## LCRIS_00088 hypothetical protein + Term 4282 - 4317 4.1 + Prom 4264 - 4323 3.6 6 4 Op 2 . + CDS 4356 - 5963 1011 ## COG0584 Glycerophosphoryl diester phosphodiesterase 7 4 Op 3 . + CDS 6035 - 6175 69 ## Predicted protein(s) >gi|256541361|gb|ACPV01000113.1| GENE 1 12 - 944 769 310 aa, chain + ## HITS:1 COG:STM2036_2 KEGG:ns NR:ns ## COG: STM2036_2 COG2207 # Protein_GI_number: 16765366 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Salmonella typhimurium LT2 # 211 301 1 95 104 61 37.0 2e-09 MAAVALDQYLASVLKSNSTDKNEIKLEAGNPDFDLFTIYLENHNTGIHRYRMDVSTILYI AKGTVTIKSGEKIIQMKSGNVLLLTEGCKYEILSQKPDTVLIKLKFKRGFLYRKYFKDFS CKGEREVKVIEQIVDSLENEHVLWLKNNQITRASQVMQHIIGGYLNNDLFTKALIQAELT TMLIISIRTQRMATPTSLDKTKFEKKTLDNYIDLHFADVSLSDAAKYFGFNPNYFSNMVK AKTGKSFVDHVDDRRMQEARELLAQPDISLREIIGRVGYSSKSFFYKKFNHITPAAMRAE LFRQANINLK >gi|256541361|gb|ACPV01000113.1| GENE 2 979 - 1875 892 298 aa, chain - ## HITS:1 COG:SPy0331 KEGG:ns NR:ns ## COG: SPy0331 COG0501 # Protein_GI_number: 15674492 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Streptococcus pyogenes M1 GAS # 1 298 1 298 298 283 50.0 2e-76 MLYQQIARNKRKTALIMFIFLVILGLVGAGIGYLWSNSPTMGVTIALIGSLVYLFIMWQN PANMIMSLNHAQEIHEADNPELWHIVEDMAMVAQVPMPRVYIIPDPSPNAFATGRDPEHS AVAVTQGILELLDREELEGVLGHELSHVKNYDILLSTIAVVLVGVISFISNMASNFWFWG GVRSDDDDDRDSNALAMIFKVVALVFVLILGPLSASLAQMALSRNREYLADASSVKLTRN PQGLISALHKIENSQPMKVADSSSAGLYIENPFHNHGLTHLFDTHPPTADRIKRLENM >gi|256541361|gb|ACPV01000113.1| GENE 3 1894 - 2454 620 186 aa, chain - ## HITS:1 COG:SP1284 KEGG:ns NR:ns ## COG: SP1284 COG1704 # Protein_GI_number: 15901144 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 4 186 1 181 186 212 60.0 3e-55 MSPLIWIILAIIVLIVAIYIVTYNGLQRAKVYAEEAWSQIDVQLKRRNDLIPNLVETTKG YAKHEKSTFEEVVKLRNQLVNVPQVNHEEAMKLSNQITDSLKSIFALAEAYPDLKANQNF LKLQEELTNTENKIAYSRQLYNSTVATYDQKLLTFPSNIVAKWHHFTKINYLETPSEEKN VPQVKF >gi|256541361|gb|ACPV01000113.1| GENE 4 2551 - 3657 1028 368 aa, chain - ## HITS:1 COG:L20481 KEGG:ns NR:ns ## COG: L20481 COG0471 # Protein_GI_number: 15673760 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Lactococcus lactis # 35 364 49 388 392 118 28.0 2e-26 MTVLKNIAKDRILQITVIITVVSLFFAKPRFADINFHTLWSVAAMLTIIQIYAYLHVLDV LAYKLTSIADNTRKLNTLFSLLAVISGMFLGNDITALTLIPLYLNIAKRYKLPQILPVTL IGMGANIGAAFTPWGNPHNIFLVSRFDVSPLKFFEWSVPYLVVSMLIMGLVFLFIPKEEI PVQKAEPIKISWRPTLITTAVFIFFFFGVFRTIDIIWPMLASIALALAINPRIMLKIDYA LLLTFTGFFIFISDIQQIPVIVNLIHGTVYSEISTYFASIISSQVMSNVPSTILVGKFTT YAQALFLGSNIGGFGSAIGSMANMLVLKTFNQHGSVSKKKFFIQWTIMQFAGLIILTAVG LLLLIFRI >gi|256541361|gb|ACPV01000113.1| GENE 5 3858 - 4262 453 134 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00088 NR:ns ## KEGG: LCRIS_00088 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 134 1 134 134 245 98.0 3e-64 MTENAISINIKPDAAEMIKSKMDADHQIVILALDDGSTKYSKKGGTCTIGDSFQFVILAE KDPKYNILIENNAGLDLYTAQPETTFFEPGLVVNARNSTLSLSSDSGIIDGGMTVTQYEP EAITADDLKNGGQC >gi|256541361|gb|ACPV01000113.1| GENE 6 4356 - 5963 1011 535 aa, chain + ## HITS:1 COG:L58914_2 KEGG:ns NR:ns ## COG: L58914_2 COG0584 # Protein_GI_number: 15673979 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 281 528 1 248 249 228 45.0 2e-59 MTFVKEIKAGSREFCQNWLRYLLLFMGLSLFNQFIVIPLFRYITTFVLQASAIPFVSYQN VVTIITTHTVAFLILIIELLLLLVILYAQLAYLLHGVWDIKHQVFTWKNSFIQTWQNIKK IRLGTLFILMLYFLLVVPLADVIFRTPLLSKVQISEFILDYLTRTPILLAVLSAAVMTIF YLAMYCLQLLVDLLPGKCPLILAIINLSLVQIISEVALVYVSVLGLSIILKALRQEKISQ TGKTKKIILSTLVVFVLVMINAISTNYLYLTSVNAKAPVIISHRGVDDKNGVQNTLQSLR KTAKEKPNYVEIDVHETKDKKFIVIHDENLLKLTGVNKAPNDLTLRQLEKLTAKEDGYHA KLVSFDQYLEEAKRLHQKLLIEIKTTAKDSKKMLQRFNQKYGKTILKNAYQVQSLDYRVV EGLHLINPRLVVFYIQPYNFTYPQSVASGYSMEYSTLNSDFIWQAHLQDRPVYAWTVNDE KLMKKMMYQQVDGLITDRVDLAKKAIKSFQKDASYATRILNYIVVLHLSKNFESA >gi|256541361|gb|ACPV01000113.1| GENE 7 6035 - 6175 69 46 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRKGENYNTGCEPNQRPKNKRNAKKRVAHVAAVVAFLNKAAKDENK Prediction of potential genes in microbial genomes Time: Wed May 25 05:49:32 2011 Seq name: gi|256541360|gb|ACPV01000114.1| Lactobacillus crispatus 125-2-CHN cont1.114, whole genome shotgun sequence Length of sequence - 9931 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 6, operones - 4 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 1204 887 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 2 1 Op 2 . + CDS 1213 - 2316 901 ## LCRIS_00093 endoglucanase + Term 2317 - 2343 -1.0 + Prom 2323 - 2382 5.6 3 2 Op 1 . + CDS 2402 - 3046 807 ## COG1896 Predicted hydrolases of HD superfamily 4 2 Op 2 . + CDS 3080 - 3961 686 ## LBA0109 hypothetical protein + Term 4015 - 4064 8.4 - Term 3999 - 4052 10.2 5 3 Op 1 . - CDS 4060 - 4992 948 ## LBA0110 hypothetical protein - Prom 5015 - 5074 5.6 - Term 5026 - 5065 1.1 6 3 Op 2 16/0.000 - CDS 5076 - 5831 257 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 7 3 Op 3 . - CDS 5831 - 7411 1599 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 7437 - 7496 6.9 8 4 Tu 1 . - CDS 7777 - 8409 636 ## COG2094 3-methyladenine DNA glycosylase + Prom 8341 - 8400 4.7 9 5 Tu 1 . + CDS 8442 - 8807 444 ## COG3189 Uncharacterized conserved protein - Term 8739 - 8774 3.5 10 6 Op 1 . - CDS 8804 - 9592 739 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance 11 6 Op 2 . - CDS 9579 - 9929 157 ## COG0350 Methylated DNA-protein cysteine methyltransferase Predicted protein(s) >gi|256541360|gb|ACPV01000114.1| GENE 1 2 - 1204 887 400 aa, chain + ## HITS:1 COG:lin0533 KEGG:ns NR:ns ## COG: lin0533 COG1215 # Protein_GI_number: 16799608 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Listeria innocua # 13 398 49 416 416 224 33.0 3e-58 KFLVKITPLKRYPKVTLVVPAHNEELVISKTTQAILNLNYPADKLQILIYADNCTDDTAK IAREIIKQYPERKINVQVIERTGSGGKAGVLNDALKIAQGEYLGVYDADAMPEENALYFL IKKILENPVRYKAAFGRNKTRNARQNFLTKCINQEIVVTQRIQHCGIWQLFKIGRIPGTN FIINTDYVRSIGGWRNGALTEDTDISFKIMGSGSLIALAYNSEAFQQEPERLKDYYFQRL RWAKGNYEVVINNFCHLFDKSNWRVKLETVYYSCTFFWFNLAIVLSDLIFFSNLIALIVH LWNPAVVIPFTISRSNILLAQILLFNWLLMVLLYILQINLAMTTQYGQATDEQIWLALAS YFTYSQLFIIVSIHAVTSVMLDRVFHRDSTKWVKTKRFAD >gi|256541360|gb|ACPV01000114.1| GENE 2 1213 - 2316 901 367 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00093 NR:ns ## KEGG: LCRIS_00093 # Name: not_defined # Def: endoglucanase # Organism: L.crispatus # Pathway: not_defined # 1 365 1 365 367 602 81.0 1e-171 MKKRWMLLGFLLVTIAFTGIMIYIRADNNSAVRNFFLHSWHKNYVVEEKNLAYINTTPKQ EQVTVLSEGQGYGMFIAAHDPAVKESNFAKLVQYYLKHRDRNTQLMAWRQTKKNGKWSSE RNSATDGDLFIAKALFLAAKRWKTPAYQRQGQKLIADILRYEYNPTTHALTVGNWADSKS KYYNLMRTSDVLPTMFDQFYRESNDSRWLLIKKTMLKRLNQLSHQHKSGLVPDFAWLTSK DAKPVKGRVTTDRYDGDYYANACRVPMDLAFSKDKLAKNTVHRLLKFFSKQNTITAGYTL KGKPVNNYQSASFSAPIYIAVNENRNQGYDNLFASQQYIFAKKLPKNNYYDAALTTMATI LTPAHRF >gi|256541360|gb|ACPV01000114.1| GENE 3 2402 - 3046 807 214 aa, chain + ## HITS:1 COG:lin2634 KEGG:ns NR:ns ## COG: lin2634 COG1896 # Protein_GI_number: 16801696 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Listeria innocua # 1 191 1 190 215 218 54.0 5e-57 MGLNAYIQGFNSLESIDRAPGYFKYHHHSVADHCFRTAELAQMMGDIEEVKGKKKINWKA LYEKSLNHDYTERFIGDIKTPVKYATPQLRKMIGDVEETMTTKFIKDEIPEEFQEIYTKR LSEGKDDTLEGKILSICDKLDLLYEAYGEIELGNPNPVYMQMFKESLETIKKFDDLVCVQ YFIKKILPDLFKGDFAGKDKMQRIAFSILLLGDD >gi|256541360|gb|ACPV01000114.1| GENE 4 3080 - 3961 686 293 aa, chain + ## HITS:1 COG:no KEGG:LBA0109 NR:ns ## KEGG: LBA0109 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 293 12 305 305 507 92.0 1e-142 MDSLHFKQEGLMNPKLTSICDICITRNLNPEDYANDAVAAFAQSLLYTFVGAKKQDQSGF IVKNKKDRKKYEAFLQDYDGNEIARQQIKRSDLNLAVIKSEDGKLNYVPNQGVTFEQNLK GMGLEINFQLNEVDFIDRERIRAKYKYRCQYCGRRGHSVDHKDPVSLSHNNSLDNLTLAC AECNRIKSDMPYKLFIQLNDQISEINKKLVKYEDALGTLREEFEHRRRYLAAQVHLKGVI NDPELNAIRKQNKSLQDAIDSLQSDYDDLRQTRKTYFDTGWKLARIKENKDII >gi|256541360|gb|ACPV01000114.1| GENE 5 4060 - 4992 948 310 aa, chain - ## HITS:1 COG:no KEGG:LBA0110 NR:ns ## KEGG: LBA0110 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 310 1 309 309 474 80.0 1e-132 MNDRVYYFIKPYDESLPLPPAESFAQILNEAYLHPFNWKARTTRKSFWWSTLINLVIGIL CILLGFYAFNQNINPGIRIVDGIVAAVVYLWLFLAALGQTIRRLHDVGYSGYWYWAAFTG YGAMFLFYLELQPSVQRQVKWGKYLFSDQDYPKGGAKSNVPVPTIGQILKEHFFDCFKWD ARSTRTSFWVGTAISQVIMTIGVFACYLLAFMLLAPFSVTEFDSGDAKVIGVIFIIFIIF FIAAAIWAFLAQLGHTVRRLHDAGFNGGWWWLGVIPYVGQLLLAFLLFHPTVQNEVKWDK YLFDPEDRIR >gi|256541360|gb|ACPV01000114.1| GENE 6 5076 - 5831 257 251 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 237 1 237 318 103 30 5e-22 MTESNEVILSLKHMQKSYGNHQVLKDISFDINKGEIVTIIGPSGGGKSTTLRCINLLEEP TGGEIDFHGKNILHPGYNRNTFRSKVGMVFQQFDLFENKNVLENCMIGQELVLKRSKDEA RKIALENLKKVGMDPFIKAKPQQLSGGQQQRVAIARAISMNPEVLLFDEPTSALDPEMVG EVLEVMQKLATTGLTMVIVTHEMGFAKSISDRVLFISDGIITEQGSPEELFDHPKNEKTQ KFLSNFRNNEF >gi|256541360|gb|ACPV01000114.1| GENE 7 5831 - 7411 1599 526 aa, chain - ## HITS:1 COG:SP0453_1 KEGG:ns NR:ns ## COG: SP0453_1 COG0834 # Protein_GI_number: 15900370 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Streptococcus pneumoniae TIGR4 # 3 323 4 325 325 258 46.0 3e-68 MSVLLSLFIGFSLSSNQTQAAKKDSGTLKIGMEANYPPYNWTQPTKANGAVPIDGSNSYA NGYDVQIAKIIGKRLHKKVIVEKTQWDGLLPALTSGKIDLIIAGMSPTAERRKAINFSEP YRKSTFVVITNKASKYSNAKKLTDFKGAKLTAQQGTLHYDLIKQLKGAKREPAMRDFSAM RQSLASGTIDGYVAEDIEFESYHNVNPNIIAVNLNKMAGFKVDHDDSVTSIGVKKGNTKL LNEVNATLRTISNKKRDQLMSQAIKEQPKAGNETKKENWLVTTWKQYGGMIMSGIGMTLL LALVGTIVGFFIGLLVGIIRTIPTPTTRGKRWTLNVVKWLLSVYVEIFRGTPMMVQAAVI YYGIAQFWHLNLNRTVAALIIVSINTGAYLAEVIRGGIISTPEGQFEAASALGMTHNQRM WHIILPQAIRNCLPSITNEFIVNIKDTSVLSIISVSELFFVGTTIASQSFKFFPTYLMIS AIYLILTFTITRIFNFIEKRLEGNKNYNLMANQVQVGTPKDAEANN >gi|256541360|gb|ACPV01000114.1| GENE 8 7777 - 8409 636 210 aa, chain - ## HITS:1 COG:SA2134 KEGG:ns NR:ns ## COG: SA2134 COG2094 # Protein_GI_number: 15927924 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase # Organism: Staphylococcus aureus N315 # 7 202 3 193 202 151 43.0 9e-37 MNYSTYFSTNTTDYIAKDLIGRMLTFDNGQEKLGGYIVEAEAYMGKKDRAAHSYGGRRSP ANEGLYGKGGTIYIYAQRQYFFFDVATKVQNEPQGVLIRAIDPTLGIETMIKNRHGKDGV LLTNGPAKMMQAFGIHDKNWNLHFLSDSPFAIDLDDRHKKIPQEIIAAARVGINQSDPVW ANKKLRFYVAGNPYVSDMKKRNYETNNGWA >gi|256541360|gb|ACPV01000114.1| GENE 9 8442 - 8807 444 121 aa, chain + ## HITS:1 COG:BMEII0787 KEGG:ns NR:ns ## COG: BMEII0787 COG3189 # Protein_GI_number: 17989132 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Brucella melitensis # 1 115 1 113 116 99 46.0 2e-21 MTEIKLVRIYDHEQPAGYRILVDRLWPRGMSKVKADLAEWDKQIGPSKELRQWFNHEDEK FPKFKQKYIEELNHNDYTAEFLQDVKKHLAKEDVLFLFGAKNKEHNQAVVLKEYVLNTLN S >gi|256541360|gb|ACPV01000114.1| GENE 10 8804 - 9592 739 262 aa, chain - ## HITS:1 COG:BS_yceF KEGG:ns NR:ns ## COG: BS_yceF COG0861 # Protein_GI_number: 16077361 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Bacillus subtilis # 3 257 7 246 257 182 46.0 7e-46 MSILKLYAPFFDGNNWLHVLTSGKDWMIILTLILMECLLSVDNAVVLAAQTQVLPNKAEQ RKSLVYGLWGAYLFRFIVIGIGTYLINFWEIKLAGSIYLFYLAFKFFYDQRHPKQAAEHE KEKEEREAARHKGKQKKRHVLSLFWRTVISIESMDIVFSIDSVLAALAVSDNPVVVLIGG MIGILCMRGVAEIIIKLMDIIPELQPMAYLLIGIIALKLLLALPPLRFELPNTVFAIIVF AILILTILFHFWKVKKHGHKHI >gi|256541360|gb|ACPV01000114.1| GENE 11 9579 - 9929 157 116 aa, chain - ## HITS:1 COG:BS_adaB KEGG:ns NR:ns ## COG: BS_adaB COG0350 # Protein_GI_number: 16077250 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Bacillus subtilis # 2 110 64 170 179 88 41.0 3e-18 APYIKQLKEYFAGIRKNFDVPIDISEFGTEFQRKVLAVVQHIPYGVTLTYGDVANSLAEA TSSRSVAHAVALNPVLIFIPDQRVILSNNKVGTYRLGQKEKIRLIKLEKKQLHVNS Prediction of potential genes in microbial genomes Time: Wed May 25 05:49:52 2011 Seq name: gi|256541359|gb|ACPV01000115.1| Lactobacillus crispatus 125-2-CHN cont1.115, whole genome shotgun sequence Length of sequence - 20249 bp Number of predicted genes - 22, with homology - 22 Number of transcription units - 13, operones - 8 average op.length - 2.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 173 118 ## LCRIS_00102 methylated-DNA--protein-cysteine S-methyltransferase 2 1 Op 2 . - CDS 226 - 924 673 ## COG0846 NAD-dependent protein deacetylases, SIR2 family - Prom 1011 - 1070 8.6 + Prom 931 - 990 12.5 3 2 Tu 1 . + CDS 1014 - 1499 543 ## LCRIS_00104 hypothetical protein + Term 1535 - 1572 7.4 4 3 Op 1 . - CDS 1500 - 2957 1060 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes 5 3 Op 2 . - CDS 2977 - 3903 589 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold + Prom 3882 - 3941 7.9 6 4 Tu 1 . + CDS 3999 - 4769 691 ## COG0328 Ribonuclease HI + Term 4778 - 4804 0.3 - Term 4766 - 4792 0.3 7 5 Tu 1 . - CDS 4797 - 5750 996 ## COG4086 Predicted secreted protein - Prom 5797 - 5856 5.7 + Prom 5759 - 5818 4.9 8 6 Op 1 1/0.000 + CDS 5911 - 6723 683 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 9 6 Op 2 . + CDS 6732 - 7388 721 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 10 7 Tu 1 . - CDS 7400 - 8095 347 ## FI9785_169 putative transposase - Prom 8164 - 8223 7.0 + Prom 8274 - 8333 7.8 11 8 Op 1 . + CDS 8360 - 8776 273 ## LCRIS_00113 hypothetical protein + Term 8793 - 8830 1.2 + Prom 8778 - 8837 6.8 12 8 Op 2 . + CDS 8868 - 9854 1182 ## COG0462 Phosphoribosylpyrophosphate synthetase + Term 9883 - 9917 3.0 + Prom 9918 - 9977 5.2 13 9 Op 1 . + CDS 10013 - 10696 845 ## LCRIS_00123 transcriptional regulator 14 9 Op 2 . + CDS 10709 - 11533 668 ## LCRIS_00124 hypothetical protein + Term 11540 - 11583 5.5 + Prom 11552 - 11611 13.5 15 10 Op 1 34/0.000 + CDS 11660 - 13144 1367 ## COG0765 ABC-type amino acid transport system, permease component 16 10 Op 2 . + CDS 13137 - 13874 594 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 13875 - 13920 7.1 17 11 Tu 1 . - CDS 13910 - 15160 1136 ## LCRIS_00127 hypothetical protein - Prom 15277 - 15336 6.1 + Prom 15226 - 15285 5.2 18 12 Op 1 . + CDS 15313 - 16395 1352 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 19 12 Op 2 . + CDS 16423 - 17172 931 ## LCRIS_00129 transcriptional regulator + Term 17190 - 17233 4.6 + Prom 17178 - 17237 6.0 20 13 Op 1 3/0.000 + CDS 17263 - 18396 1228 ## COG5438 Predicted multitransmembrane protein 21 13 Op 2 . + CDS 18393 - 19178 590 ## COG5438 Predicted multitransmembrane protein 22 13 Op 3 . + CDS 19150 - 19983 799 ## COG0657 Esterase/lipase Predicted protein(s) >gi|256541359|gb|ACPV01000115.1| GENE 1 2 - 173 118 57 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00102 NR:ns ## KEGG: LCRIS_00102 # Name: ogt1 # Def: methylated-DNA--protein-cysteine S-methyltransferase # Organism: L.crispatus # Pathway: not_defined # 1 57 1 57 172 118 100.0 7e-26 MTEFFYYDYVTIEPWTYFLTASEAGLTYVGLKGDETVSPIFSFYPHRMLVRDPKKMA >gi|256541359|gb|ACPV01000115.1| GENE 2 226 - 924 673 232 aa, chain - ## HITS:1 COG:lin2882 KEGG:ns NR:ns ## COG: lin2882 COG0846 # Protein_GI_number: 16801942 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Listeria innocua # 4 231 1 229 229 217 48.0 1e-56 MMDLAELQTDINNAQHIVFLTGAGVSTHSGIPDYRSKNGIYDGVQESPETILSDSTLFNR PEFFHEFVMNNMYFPTAKPNLIHEKIAHFCNEKGNLITQNIDTLDTKAGNQHVTEFHGNL YNIYCTKCHQPVSYEEYAKSYLHKDCSGIIRPGIVLYGENIDPKVLNQSVEIMQKSDLII ICGTSFVVYPFAQLLAYRKEYAKIYSINKTEIPTPGVTQIIGDALTAFQNLN >gi|256541359|gb|ACPV01000115.1| GENE 3 1014 - 1499 543 161 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00104 NR:ns ## KEGG: LCRIS_00104 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 161 1 161 161 299 99.0 3e-80 MKYMTYFYVAIDILLVVYACYSWYWQAKVDFRGRYRISSVVWALIFIWLGFTWNYIEKGD PGLSVFLALFILISIVDGFSGFSKKRMVVSGYFKRTVKYDDLASATLIQIPNQEKPLVMA IFRTSDGKAYMMRFNNEVNSVIKQLQEYAGREIPVEVQSMM >gi|256541359|gb|ACPV01000115.1| GENE 4 1500 - 2957 1060 485 aa, chain - ## HITS:1 COG:L186875 KEGG:ns NR:ns ## COG: L186875 COG1502 # Protein_GI_number: 15673156 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Lactococcus lactis # 11 485 18 487 487 423 44.0 1e-118 MIWWHDFVRIIIITNTILAFYVVFHRRRSVSTTWAWLIILLVLPVVGITLYAFFGRGISQ ENIFAINKQKHIGLRNVQKSIAKAPKNTSPSDTSKAGNIAINFFNHQQEAPLTKNNQVKL YTEGETFFHDMLKDMVRAKETINVEFYTFYSDNIGNRVLQLLIKKAKQGVKVRVIYDAWG SMGATKAWFDQLRAAGGEVLPFITSRNMITRYRINYHLHRKIVVIDGRISWTGGFNIGDQ YLGKKKKFGHWRDSQVRIVGSASLLLQERFVMDWNASITNNQQLIRFNSTLFPDLDEKNI HEGDVATQIISDGPDRYAPYMRNGMMRLMLLARKRLWIQTPYLIPDDAVFATWQTIASSG VDVRIMIPCKPDHPFIYRATQWYANELTRLGVKIYIYKDGFLHAKTTIVDDHFSSVGSMN QDFRSYNLNFEDNAVFYDKKFNQKMVAAFEEDMKHSHLLTKEEIKKQSRALRTLQAFSRM LSPIL >gi|256541359|gb|ACPV01000115.1| GENE 5 2977 - 3903 589 308 aa, chain - ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 64 304 44 286 289 94 29.0 2e-19 MFFNTKKYAEEVEKDHKHDLQEEPSMFNMISLGLMATFAPTRIFLKLHKRHIENKANIEK SDLKQVPIIYFHGFRGGDYTTRVMVKHATHDKGNPKFLKVTVDLLGNFKLEGTWTSDKHP IVQVAFRQRIVGIYGIDYYLNFVLPFLAKRYGFKNYIAVAHSLACPCIIRTEMKHYRSKT FPHLKKCAFIAGPFDGVTYLGDIPNVNYLTESGRPSVMNPHYLYLFFNRRKFNPDISVLN IYGNVLDNTNTDKFISVVSAKSIRYIVAPKAHFYQEVEVRGKDDAEHSWMHDNPFVIDII DKFLKLKK >gi|256541359|gb|ACPV01000115.1| GENE 6 3999 - 4769 691 256 aa, chain + ## HITS:1 COG:CC3365 KEGG:ns NR:ns ## COG: CC3365 COG0328 # Protein_GI_number: 16127595 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Caulobacter vibrioides # 126 254 20 143 149 69 36.0 6e-12 MKFYAVKKGRTPGIYRTWDAAKEQVDGFSGAEYKSFEQITDATDYLDWNAQTQSDVLQKG EDNLQNAVKRVQQKSQEIKKAPRKRAKQYNHVNSNPADFFAVTYTDGGTRNTGVYKGGHV KKTDKAAWAYLIEWDDQKVHGSGGEYGATNNKMEQTALINALKKLLELGFNDKHLLFVLD SQYVLNAINKHWLQGWKKRGWRRSSGPLANVAEWQELDRLLKEFPDSTFEWTKGHANNRG NEFVDHELNRYMDQKM >gi|256541359|gb|ACPV01000115.1| GENE 7 4797 - 5750 996 317 aa, chain - ## HITS:1 COG:SP1027 KEGG:ns NR:ns ## COG: SP1027 COG4086 # Protein_GI_number: 15900898 # Func_class: S Function unknown # Function: Predicted secreted protein # Organism: Streptococcus pneumoniae TIGR4 # 2 307 3 319 324 126 33.0 6e-29 MKKFITLLTAMLLSVVAMISFTKPVLADDDTPVVTLGTSLTDAQKQGTLKTLTAPLNGGN YQTITVTGSDLVKYLNPSGDNFTTSSGVWSSAMIQKTSSGSGINVKILDYDGKNNITTIT ANQYKNAALTAGISDANIYVTSAIPIDGSGALAGVYAAYAKNGNTLNQKQVNAAQDEMNT LSGITQDNKNKKGYSDAQLNNAVAGAKNEMAKQGQNITDSQIRDIVNNQININHLGDTIN NNQKNQIVNLLIEIRDSGALKDGNFKQQASKLSSQIQNGAKNIFNKFNTQENRNWLQNLW DQIVKFFSGLFGGVILN >gi|256541359|gb|ACPV01000115.1| GENE 8 5911 - 6723 683 270 aa, chain + ## HITS:1 COG:BS_yveR KEGG:ns NR:ns ## COG: BS_yveR COG0463 # Protein_GI_number: 16080483 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 2 261 1 255 344 121 27.0 1e-27 MLQVPKLTIIMPVYNTAQYLPRAFDALLNQVDKSFKLLVVDDGSTDNSVEVAESYANRFP YFKIIKKKNGGPSDARNVGMQYLDTPYVTFHDGDDWVDPGYTSFFIHAFESHPDVSLVSC GYWMDYPDKKQRVVGRPEGGYLTRGETYLKLTNVFSSPMKGYSWNKAYKTAIIKKYHLKF DRDISLLEDQIFNVKYISVAKGVYYTQKPYYHYWQRKGSIIHQPNIKKVADNFRGNYRVW SKIISTMMKDREEEKMRKKLERQQALRDSE >gi|256541359|gb|ACPV01000115.1| GENE 9 6732 - 7388 721 218 aa, chain + ## HITS:1 COG:SMc04165 KEGG:ns NR:ns ## COG: SMc04165 COG0596 # Protein_GI_number: 15965747 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sinorhizobium meliloti # 4 201 29 261 287 90 26.0 3e-18 MKEKVNGVEIYYHKLGKGEPLLLLHGHHLDGGMFDKIVAPLSLYYTVYVLDMRGHGLSEG DIAEHYKTEVEDVYTFIKQVGIEGCYCFGFDAGGLVAMMLARKHPTIFKKMIVAGVFVNG AGIRPYHYLTEGFHRFLRLDRDSRVELTESFISVDDLKKITTPTLCVVGEKDWVKVEHVR WYSQFMPNARLVIMPRQTHDSYAVRSLKLLDLIKGFCR >gi|256541359|gb|ACPV01000115.1| GENE 10 7400 - 8095 347 231 aa, chain - ## HITS:1 COG:no KEGG:FI9785_169 NR:ns ## KEGG: FI9785_169 # Name: not_defined # Def: putative transposase # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 231 55 285 285 440 90.0 1e-122 MLIWQTEIGIESQRRFCKFFVGLSHSRFNRRAKMLLPLIRCIRQAWNQEVKVAGEFLIID SFPVPVCQPVRNYRVKIFRDIADIGYKATKKVYYYGFKVHALVSDDGYLLDYAVTKASVH DAKETTELMINAHPINHYLLGDEGYLGKDLAAELKGMGYVLWTPYRKNMKGAKKHNNHQL MAIRRTIESDFSLLSYYNAENNRARSLAGFQQRLEIAILAYNMAYCLERFN >gi|256541359|gb|ACPV01000115.1| GENE 11 8360 - 8776 273 138 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00113 NR:ns ## KEGG: LCRIS_00113 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 137 1 137 137 114 59.0 1e-24 MWIVLLVNVIVAAVAVIFGFQNRVETLNLFNAGIVFITFGIVLLLGAIPVYQDFSTSSIL MFIAGILIIVRIIMLAVSLITKVPRTVNLQDIAISLMIAAVCLIYFMHGLNLSLSNLVVP ELALIIGIILFYFKRKRQ >gi|256541359|gb|ACPV01000115.1| GENE 12 8868 - 9854 1182 328 aa, chain + ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 13 321 10 316 317 283 47.0 3e-76 MNKEELHQLLHPMKVIGLGGNPALNEKIAAILHQPLIETAVHHFSDGEIQVNIGESVRGC DVFVIQSIQDPVNENFMELEIVLDALQRASAHVINVVVPYLAYSRSDTKTRSREPITAKL VANLLQLTGMDRLITVDLHASQIQGFYNIPVDHLHAIPLLGQYFLDNGIATKEDDDIVVV SPDHSGAKLARNFGQYFNAPIAIVDQRGARYDTEVHDMIGDVKDKKCIIIDDLIDTGSRI SSSTKSVLAAGAKKVYVAATHALLSKNATEVLNELPIEQIVVTDTIKHKRYPDRMVRISV DQLLARGIDYVYNDRSIHQIFDEQNRLK >gi|256541359|gb|ACPV01000115.1| GENE 13 10013 - 10696 845 227 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00123 NR:ns ## KEGG: LCRIS_00123 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 227 1 227 227 434 99.0 1e-120 MARRKNMKRRRVILGNTFHLIRENGMDNVSLQMIAEKSGISKSLLQSYYPHKAKLTNDII RNLFNTLGQQVNNYDMANSNLPYARTKAFIYTIAILGMHDEGLDRIISEAFVSNATLDNW GIMLNEWIKENHLFDDINVDESELETGIAFVTSGIGRLYHDRKKHHLTAEALANYATSAL MFSFLHCSSEEIDQALKEGHEIIETADMEVVHRAIDTMFDEGKEIFS >gi|256541359|gb|ACPV01000115.1| GENE 14 10709 - 11533 668 274 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00124 NR:ns ## KEGG: LCRIS_00124 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 274 1 274 274 484 99.0 1e-135 MVEGKRADLRRMGYEQNDQYKRLLAFVIFLIAALSLITATFLNPIFMKKQIRTSYNRAVV VRQVNKNYDSLADLINADSEDNSNLLSDTQTQPIADHIIDYSLGIHWFKVTSLPLANQIL SDIDQGIAKGSSSGAQEVNRKLKKQGTNAPYAIIKAFNLSVITLGANIAGLLFIVNLIII IVTIITMVSLLNDMKSRATIRMVIHDTMAAGMWAGFWLILISGLLALVPVIFNVDNIEFG FLLEIGSSVFLEYVIAGVIIYIICAIPWQITAAK >gi|256541359|gb|ACPV01000115.1| GENE 15 11660 - 13144 1367 494 aa, chain + ## HITS:1 COG:lin2352_2 KEGG:ns NR:ns ## COG: lin2352_2 COG0765 # Protein_GI_number: 16801415 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 286 494 7 215 215 234 55.0 3e-61 MKKAKIIKTFLAFITMLSTLFLFNQPVNAANKEVETGSVMKKIKQSKELVVGTSADYPPL EFTTSENGNTKYVGVDIELAKDIAKDLHAKLVIKNMSFDSLLVALETGKVDMVISAMTPN PERKKSVDFSKIYYKPSGEYFLINKRDQAKYKKIKDFAGKTVGAQTGSIQYSLIQKQMKQ SKVKGLGKINNLVLALKSNKISGIVMEEMTAKAYQQNDNSLMAVRSDLREQQAGNAVAIA KGQNDLVAAVNKTINRVEQKDLINKKYLPEAAKYMKTAQKTNTMTKYIPYFIKGVGYTIV ITIFSVLIGIILGMLLALMRLSKNKLLHWIAVCYIEFIRGTPQMVQILFVYFGVGALISN LSAVVAGIIAIGLNSGAYVAEDIRSGIASVAKGQTEAARSLGLSQAKAYRYVIIPQALKN IWPALGNEFITLLKDSSLVSVIGVTELMYQTELIQTSTYRGVLPLFIAMIIYFIMTFTLT RLLNYFERRMKHND >gi|256541359|gb|ACPV01000115.1| GENE 16 13137 - 13874 594 245 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 244 1 242 245 233 48 8e-61 MTKMIDIQHLKKTFGKNEVLKDISAEVDKGQVICIIGPSGSGKSTFLRCLNVLERPTAGK IVFDGTDLASLKDSKELDQLREKMGMVFQNFNLFPNMDVIENIKLAPMKVKGVSEAQAEK TGLALLEKVGLADRAKQFPASLSGGQQQRVAIARALAMDPEVMLFDEPTSALDPEMVGEV LKTMQDLANSGMTMVIVTHEMGFAREVADEVWFMADGYLQEKGTPQEVFEHPTSERAKDF LSKVL >gi|256541359|gb|ACPV01000115.1| GENE 17 13910 - 15160 1136 416 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00127 NR:ns ## KEGG: LCRIS_00127 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 416 1 416 416 750 99.0 0 MLLRKFSIAAAATLFIPLAGQVTQAATFTTQEVNEVHNFQKEYANLDKTSYSAANIYAKK PNLSKKFKVGRLDPKYIKTQTDYINYYRSLFSLPAISTTDTLNKNAQITAAVMAAINANP FINQHGLPSETKPSNISKFVWKLAKDTSETSNLNFNVSQQTAGDVITDLITDHYNLTGSD TGHRAWLLSSRLTTTGIGAAYGTNGYRYSVQKVLNINDTFRPASQPVVAYPSMRLFPIEL LQGKNIMWSLYLSDRTIKNKPTITITDLDTKVVTTAAHVKNYSSCGYGNFRTILTYSPAN TNLVAGHEYEVDVKGVQKYRFKLFKQDSTNDTTNYQVQQDTTNTPTNQATTNLNSETDVQ SPILLQNKILRAVIIPKATALPNNQNTFFNALIQKGWHQNFFVRQYVLSNPIITDE >gi|256541359|gb|ACPV01000115.1| GENE 18 15313 - 16395 1352 360 aa, chain + ## HITS:1 COG:ECs0431 KEGG:ns NR:ns ## COG: ECs0431 COG1181 # Protein_GI_number: 15829685 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Escherichia coli O157:H7 # 3 348 2 353 364 301 44.0 2e-81 MTKKLQVGLIFGGNSSEYEVSIVSGRNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVL DDPSYQVKNPHKVNNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMDKPFVGDD VLGAAVTMDKEFTKILAQRVGVPVADWISIKRFEYDDKKNAKLNYEKVAEKLGRDMFVKP SNQGSSVGVSHVTNADEYTAALKEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQ ITNAKGSFYTYENKYDDNSTSKLQIPADLPQEIIDTVRENARKVYAATECSGMARIDSML TPGGKVVLTEVNALPGFTNISMYPKLFEEAGVPYSELITRLIEAGMDRFDHKKTLLHKHD >gi|256541359|gb|ACPV01000115.1| GENE 19 16423 - 17172 931 249 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00129 NR:ns ## KEGG: LCRIS_00129 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 249 1 249 249 375 99.0 1e-103 MTTNKHDFEELAAPKAAAQELGISVATLRKYSLIVEKVTGKSDYFARTKQKARLYHQKDI DDLKAFHRLSKNSGLTLQEAALQIYAVSEKKPEPETKEPAPKPAYNSTDVMDTEQVVKLL NTLQKTISNQNEAINSLQKQLNVIQKQNQDLIEAQKQLAAPQDDLDKFAALPDISGIVSA DEPKPKSEEEKRAEVKKDMNKSQEQMHDEIMSKAKENAKKRATSNVHRTLEDMQLTDQKE HWWQKIFKF >gi|256541359|gb|ACPV01000115.1| GENE 20 17263 - 18396 1228 377 aa, chain + ## HITS:1 COG:SA0428 KEGG:ns NR:ns ## COG: SA0428 COG5438 # Protein_GI_number: 15926147 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Staphylococcus aureus N315 # 15 350 20 352 370 163 30.0 5e-40 MKFKWKKRYTIAVIVAIVGALLTVLSYFATDIYHKDDVAVITDSKIKDTLIEKSEDVYKN ADETRQQILHLKVLSGKHKGETYTTKNVYYPSQLTTQKYRAGQRIFVNIKKGDPAIVNPK RDWVLVLVVTITLALMVAAVGKHSLSLVVSMVISWLIFYLIIIWDVHLNGAHIILLFGLA DIVFSFFSLLIVQGLNKKMLATWLATLLGVFVSFALCYVIMKLTGESEMKYETGDYATQD PRGLFLAQTLIGILGAVMDEATDIISSLYELIQTKKNITMRQLIHSGRTMGQEIMGPLIN VLVLIFIAGALPETILYLRDNNTLASTFGFTLSLGATQSVISAIGIVLTVIFATGCSLFF LKKRDWKSLFKKEGENK >gi|256541359|gb|ACPV01000115.1| GENE 21 18393 - 19178 590 261 aa, chain + ## HITS:1 COG:L17781 KEGG:ns NR:ns ## COG: L17781 COG5438 # Protein_GI_number: 15672790 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Lactococcus lactis # 23 249 23 249 253 106 28.0 4e-23 MSTLFALIVVLAILMTIVGGETGIRSFFSVLINTILLILVAMLISWGINIAILTLIFIPL KLVTIIFLGTHDYTVAKNSFYSSFLVCLIISLFILGCQYLAQAAGLGPEAGELLVGLSQM PGLSYPMIAVTVAIFSTLGAIAEAAVAMSSGLLEIKKHNPAIGEEELMASGTAIGNDVLG TAMNTILFGMFGSFLSLFLWYFRLHYTIGEVLNEKLFVNEALIIMYSLIGVILTVPLSSF MLSRGMSKKGPKHESRKSDAD >gi|256541359|gb|ACPV01000115.1| GENE 22 19150 - 19983 799 277 aa, chain + ## HITS:1 COG:CAC2917 KEGG:ns NR:ns ## COG: CAC2917 COG0657 # Protein_GI_number: 15896170 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Clostridium acetobutylicum # 4 273 10 272 272 153 34.0 4e-37 MRVENLTLTNFNNREYQVHTYVLEPNPELVEQKRPLAIVVPGGSFNHLSKREGEPVALAF NNQGFNSVVMEYNLVQDPDKIYPDAGLDVLSTVKYFRDHADEYQLDKDKILTVGFSAGGH VVSVANNMALNKNYQTKYDFDKTDALPNKTILGYPLIDIKKIGFPIPEDQKAKMPVEEDI LDSALGVTRETPDTFIFQAWDDPVVLIGNSIEYIGALNKNKVSAEAHLFNHGYHGFSLAR HNVETKGQDWQDNPHAAHWFNLAMEWLKSEWGELCEA Prediction of potential genes in microbial genomes Time: Wed May 25 05:50:20 2011 Seq name: gi|256541358|gb|ACPV01000116.1| Lactobacillus crispatus 125-2-CHN cont1.116, whole genome shotgun sequence Length of sequence - 3290 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 27 - 3035 2562 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases - Prom 3062 - 3121 5.7 Predicted protein(s) >gi|256541358|gb|ACPV01000116.1| GENE 1 27 - 3035 2562 1002 aa, chain - ## HITS:1 COG:PAE1968 KEGG:ns NR:ns ## COG: PAE1968 COG1501 # Protein_GI_number: 18312999 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Pyrobaculum aerophilum # 389 663 402 660 684 118 31.0 7e-26 MTQNQIERHQLGQLIGANKRDHYYELHYSTGDIARLYILADGIFRYFLDPAKKFDENHSS FVDLSQFNNDYFEKSQPKATSDSLIIKSGNYQLIFQQKPAVMSIFDEMLHRNRLVQLSPL ELGNDQTTEILKQHKNEFYFGGGMQNGYFSHKGEIISIKRDKITGKGGVLTQVPFFWANS GFGELRNTESAGNYDFGKSNPDATILKHDTNMFDTFYLLGNSPKNILAKYYMLTGKPLMP PKYALGLGHVGNFLTTLWQPGEAKERNAVMFEDGNYYTRTNKPEDASGKGSLNGEEEYQF SARAMVDRYQKQHFKLSWIVPNYDVQEINEEAMASFSEYAAIHDVSAGLWSQNNTPKASP DTTFIQTDTTDPKVLKNDALILRNNLKRKRPLIFSNTGIAGSQNRTMLAFGDIGGNWENI PTQVAGFLGASLSGQPLVGSAVDGTAGGGNAQIAIRDFEWKAFTPILFNLDDQGKFSKTP FAYNSKMAQINRAYLKLREQLQTYLYTLIYRAQVGEPILRPLFLEFPHEQVNYTPQVGHE FMLGPNLLISPIVNGREDGNGNSRKDNLYLPNHRTMWVDLFDGKKYLGGRVYNKQSYPSW HLPVFVRGGAIFDLGERNYVLYPQGKSKMVTYDDNGYNDYSRNHVATQITSDLEASKLTI TIDPTQGDFNTFQTENTTNLNIMCDGYPDGLTVKINDKEIPMQEYGTVDTFAHAKEGFFF NTNYSWMPEFDQYQEKKQTALQIKLAKRDITDSKIEITIRNFRYGNETLVHAITDSLLRS PKQPMVDPDKISSHSLTVVWPQLTDQVQIEVNGILHDGIDGNSFTFHELVPNTRYTLRLR YVAGNKVSEWSDPFGAITKPDPMNYAINDIHVTSSLASPKDHPIDYLTDLKLASEWETID GVSEDKPLELNFAFNHLEHLSRMVWVPRKIDHQGDPVEVSVELSSDGVNFKPYGDHLTWK SDSKNKVVGLRNVDAKAIRLKVYKSSGPFVAAKEVIFFRDKK Prediction of potential genes in microbial genomes Time: Wed May 25 05:50:21 2011 Seq name: gi|256541357|gb|ACPV01000117.1| Lactobacillus crispatus 125-2-CHN cont1.117, whole genome shotgun sequence Length of sequence - 1335 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 47 - 1201 1450 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase + Term 1222 - 1259 3.1 Predicted protein(s) >gi|256541357|gb|ACPV01000117.1| GENE 1 47 - 1201 1450 384 aa, chain + ## HITS:1 COG:SP2056 KEGG:ns NR:ns ## COG: SP2056 COG1820 # Protein_GI_number: 15901876 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Streptococcus pneumoniae TIGR4 # 1 384 1 383 383 389 51.0 1e-108 MTYYIHADKFFLENRTENGGYLEVQDNGKFGFFYPESKKPEGKIVDYAGKWVAPGLVDTH IHGSLREDVMKSDWEGINKISKGLLSAGVTSWMPTTITAASDTLTRICKMFADHQGQEEG AKIQGIHFEGPFFTEEHAGAENPKYMMDPDINEFNKWLDASNGMLKKISMAPERKGSKEF IREAVKEGIVVVLGHSSASFEEAVAGVEAGATMFTHTFNGMPDPSHHTPSISNAAMTLNN VTDELICDGHHVQPCMAKTLINAVGPEHIALITDCMEAGMMPDGDYMLGELPVYVKDGMA RLKDGDNLAGSILQLKQAVKNVVDWNIVTPEKAVMMASYVPAKSAHILDNCGTIAPDKDA DFLILNPDLTLSETYLNGESRYKA Prediction of potential genes in microbial genomes Time: Wed May 25 05:50:24 2011 Seq name: gi|256541356|gb|ACPV01000118.1| Lactobacillus crispatus 125-2-CHN cont1.118, whole genome shotgun sequence Length of sequence - 7638 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 6, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 488 - 547 4.7 1 1 Tu 1 . + CDS 601 - 747 176 ## LCRIS_00137 putative protein without homology + Term 749 - 795 -0.3 - Term 1284 - 1318 2.0 2 2 Tu 1 . - CDS 1365 - 1841 611 ## LCRIS_00141 nucleoside deoxyribosyltransferase - Prom 1866 - 1925 6.6 + Prom 1809 - 1868 5.7 3 3 Tu 1 . + CDS 1956 - 2453 526 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) - Term 2432 - 2465 1.1 4 4 Tu 1 . - CDS 2471 - 3307 948 ## COG2365 Protein tyrosine/serine phosphatase - Prom 3393 - 3452 4.4 + Prom 3213 - 3272 4.7 5 5 Tu 1 . + CDS 3424 - 3918 631 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 3927 - 3973 6.3 + Prom 3966 - 4025 5.4 6 6 Op 1 15/0.000 + CDS 4262 - 5191 1273 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component 7 6 Op 2 9/0.000 + CDS 5222 - 5995 343 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 8 6 Op 3 8/0.000 + CDS 5995 - 6786 1052 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component 9 6 Op 4 . + CDS 6786 - 7598 978 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component Predicted protein(s) >gi|256541356|gb|ACPV01000118.1| GENE 1 601 - 747 176 48 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00137 NR:ns ## KEGG: LCRIS_00137 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 7 48 57 98 98 61 76.0 9e-09 MTTDSINFKIDAESKKVMIKELAIINGLIPDDDNTVDNLNDYFKNLGI >gi|256541356|gb|ACPV01000118.1| GENE 2 1365 - 1841 611 158 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00141 NR:ns ## KEGG: LCRIS_00141 # Name: ntd # Def: nucleoside deoxyribosyltransferase # Organism: L.crispatus # Pathway: not_defined # 1 158 1 158 158 312 99.0 2e-84 MAKTKTLYFGAGWFNEKQNKAYKEAMEALKQNPTVDLENSYVPLDNQYKGIRVDEHPEYL HDIEWASATYHNDLVGIKSSDIMLGVYLPEEEDVGLGMELGYALSKGKYILLVIPDGDYG KPINLMSWGVCDNAIKISELKDFDFNRPRYNFYDGAVY >gi|256541356|gb|ACPV01000118.1| GENE 3 1956 - 2453 526 165 aa, chain + ## HITS:1 COG:CAC2958 KEGG:ns NR:ns ## COG: CAC2958 COG1762 # Protein_GI_number: 15896211 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Clostridium acetobutylicum # 5 158 7 158 164 110 39.0 2e-24 MTNQNLFAPDAVFISNQTKQDLVFKEVYEHLRESGYVKGNFLHHIVEREHNFPTGLDTAT LGKNIPNIAIPHTEGEFVNTRLIVPVALKTPVTFHNMINPSQAIEVKFLFMLLDNDPDGQ AALLAQVMDFLANTPANELREVFNFTDPSAIYAFLEQKFGKKKED >gi|256541356|gb|ACPV01000118.1| GENE 4 2471 - 3307 948 278 aa, chain - ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 28 276 53 297 298 144 36.0 1e-34 MTFINRKGRIFLTKKLTNQLIGVTSGRNFRELGGYETMSGKKIKMHKLLRTGNLADLSPF DKQFLTDYGVKYDVDFRSKEEVDNQPDRVPDGVEYIYDPVFSEDLTNSSKSLTDLDTQAH DDADFGFNHMHYAYEDMIESEPAQKAYRKFFDVLLENTVDGESVIFHCTAGKDRTGFGAL LALSALGVPLNTIKKDYLLTNITTKDFVDSMVEHARQNGKNENVLQSIRDIQSVRSEYLD HAVKVLNDEYGGINNYLRDVMKLSSADIMKLRNIYLED >gi|256541356|gb|ACPV01000118.1| GENE 5 3424 - 3918 631 164 aa, chain + ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 7 152 6 147 152 103 43.0 1e-22 MTDKTKESILVPVDGSESAERAFDKAVKVGLRDGAHVDVLNVIDTRQFMGEMQDTLISGD TIYQMTQDSEEYLKSLKKWAHDNFGFDDVDYHIRYGSPKRIISYDFIKDHHNTLIVMGAT GLNAVERMLMGSVTEYVNQHALADVLIVKTDMGNNPLKPTMKKN >gi|256541356|gb|ACPV01000118.1| GENE 6 4262 - 5191 1273 309 aa, chain + ## HITS:1 COG:SA0138 KEGG:ns NR:ns ## COG: SA0138 COG3221 # Protein_GI_number: 15925847 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 308 1 318 318 333 58.0 3e-91 MKRFRRILVAVVALLVAVVATACSNKSNSSKGGYTPKSLTIQFVPSQAATKLQARAKPLE KMLSKRLGIPVHVSMSTDYNTVVEAMKSKKVDVGFLPPDGYVLAHKQGAADLLLQAERYG VKQPGGKATNQLVKSYRAEILVKKGSKIKNWKDLKGKSISVQNPTSSAGYVFPVAELKQK GLDVTKSCKLVTVTGHDQAVLNVLNGDTDAAFVFEDARNIVKKDNPKIMSQVVPIYFTKP IPNDTISVIPSMSKSFRKKLAKAFISVAKSKEGKKVIESVYSHEGYAYAKDSDFNVIRKY DKIVESTKK >gi|256541356|gb|ACPV01000118.1| GENE 7 5222 - 5995 343 257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 6 245 1 229 245 136 35 4e-32 MADKPMIQLKDVSKIYDNGTVGLKGINLTINKGEFVVVVGLSGAGKSTLLRSINHLHDIT SGDILIDGKSITSAKGKNLRKLRRDIGMIFQNFNLVKRSSVLRNVLVGRVAYYPTWKTTF NLFSKEDKQKAYEALQQVDLADKVYARADELSGGQQQRVAIARVLMQNPKIILADEPTAS LDPQTSVRVMNDLKMLNEKYGMTVVANLHSIELAQQFGERVIGIRAGQVVYDGKMKDTPK SVFTNIYNGGNGSEEDE >gi|256541356|gb|ACPV01000118.1| GENE 8 5995 - 6786 1052 263 aa, chain + ## HITS:1 COG:SA0136 KEGG:ns NR:ns ## COG: SA0136 COG3639 # Protein_GI_number: 15925845 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Staphylococcus aureus N315 # 1 261 5 265 266 208 48.0 8e-54 MPEQVNQLPKRKFKVMNLVWTIIMIAGLFISINVTNTHISVLFENWNQFADIFIQMSHPD WSYLNVVWPKLIETIKMAVLGTVIGSVVAFIYSLLIARNIVKNKAVTGILRVIMNIVRTI PDLLLGAIFVAIVGIGPVAGILALAVFTFGVVVKLFYEAIETIDPGPIEALTAVGANKLQ IIHYAVMPQIITYFISYVLYAFEINVRASTVLGYIGAGGIGLNLQQTLQVFNYAQTGTII IVIIVVVVLIDYVSSKSREELMK >gi|256541356|gb|ACPV01000118.1| GENE 9 6786 - 7598 978 270 aa, chain + ## HITS:1 COG:SA0135 KEGG:ns NR:ns ## COG: SA0135 COG3639 # Protein_GI_number: 15925844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Staphylococcus aureus N315 # 15 270 16 271 271 221 53.0 1e-57 MDTTMKKLPAKPVDRKKQVAHWLIAIATIVIIVWSCTGINFGGIKATAGQIAGAIFSGIF HPDWSYVYNGSGEDLVSQLWQTICIAFLGTFISAIISLPFAFWAAHTKHKHWYTSRIGKI VLAIIRSFPEIVLALMFIKAVGPGSAAGVLALGFHSVGMLAKLFSEAIENLEEGPNEAVI AAGGSKFHVIMFSTMPNLMPALISNTLYRFDVSIRSASILGLVGAGGIGYPLIIALQYRQ WDRVGIILLGIIIMVVIIDWISGWIRKKLV Prediction of potential genes in microbial genomes Time: Wed May 25 05:50:34 2011 Seq name: gi|256541355|gb|ACPV01000119.1| Lactobacillus crispatus 125-2-CHN cont1.119, whole genome shotgun sequence Length of sequence - 19535 bp Number of predicted genes - 17, with homology - 17 Number of transcription units - 10, operones - 6 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 23 - 592 372 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) - Prom 666 - 725 8.2 + Prom 613 - 672 7.2 2 2 Op 1 . + CDS 751 - 1236 701 ## LCRIS_00151 hypothetical protein + Term 1244 - 1280 1.4 3 2 Op 2 . + CDS 1293 - 2690 1376 ## LCRIS_00152 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase + Prom 2727 - 2786 5.5 4 3 Op 1 1/0.000 + CDS 2827 - 4776 2171 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) 5 3 Op 2 . + CDS 4798 - 6081 1438 ## COG3919 Predicted ATP-grasp enzyme + Term 6090 - 6124 2.0 + Prom 6170 - 6229 5.8 6 4 Op 1 12/0.000 + CDS 6255 - 8462 2200 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase 7 4 Op 2 . + CDS 8462 - 9175 595 ## COG0602 Organic radical activating enzymes + Term 9187 - 9221 2.0 8 5 Op 1 . + CDS 9227 - 9805 545 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 9 5 Op 2 1/0.000 + CDS 9798 - 10994 911 ## COG2461 Uncharacterized conserved protein + Term 11001 - 11041 2.3 + Prom 11020 - 11079 5.8 10 5 Op 3 . + CDS 11111 - 12328 996 ## COG0477 Permeases of the major facilitator superfamily + Term 12335 - 12381 7.3 + Prom 12330 - 12389 7.3 11 6 Tu 1 . + CDS 12409 - 14355 2533 ## COG3590 Predicted metalloendopeptidase + Term 14487 - 14532 12.3 - Term 14484 - 14510 -1.0 12 7 Tu 1 . - CDS 14529 - 16550 1796 ## COG3158 K+ transporter - Prom 16706 - 16765 7.3 - Term 16718 - 16767 2.6 13 8 Tu 1 . - CDS 16772 - 17206 513 ## LCRIS_00162 hypothetical protein - Prom 17348 - 17407 9.4 + Prom 17305 - 17364 6.9 14 9 Op 1 . + CDS 17398 - 18477 722 ## LCRIS_00164 putative protein without homology 15 9 Op 2 . + CDS 18546 - 18740 320 ## LCRIS_00165 putative protein without homology + Term 18748 - 18798 10.8 - Term 18741 - 18781 5.2 16 10 Op 1 . - CDS 18889 - 19263 406 ## LCRIS_00166 transcriptional modulator of MazE/toxin, MazF 17 10 Op 2 . - CDS 19250 - 19525 266 ## LCRIS_00167 hypothetical protein Predicted protein(s) >gi|256541355|gb|ACPV01000119.1| GENE 1 23 - 592 372 189 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 7 183 3 179 185 147 41 4e-35 MNQEIIRCPWGDTKDEAVQEYHDHEWCKLNLDESHLYEMLVLELFQSGLSWSTVLHKRNN FKAAFKNWQISEVAKMTDKDIESLMQNKGIIRNRMKINAAVKNARAFLAIEQKYCSVAKY LQNFVPTPIVHDIASFDDVPASNDLSQKISKQMKKDGFSFVGPVVIYSYLQGIGLINDHL NQCQFKFHG >gi|256541355|gb|ACPV01000119.1| GENE 2 751 - 1236 701 161 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00151 NR:ns ## KEGG: LCRIS_00151 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 161 1 161 161 271 100.0 4e-72 MEKLDTMMLADDLALSQDKILNGEQDFGAEAVYKVIDNLGVLNNPIKDYFDMTEEQYYEA ESDHKLTLIKMDSKLTDLHDRILTNHVDGFVDKDEINLTYNHENPYEDDLYDPTTDYREI VYSLKVIGAVQAIAAKDLQEVLSKDAVLSIGLAAYALAHNA >gi|256541355|gb|ACPV01000119.1| GENE 3 1293 - 2690 1376 465 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00152 NR:ns ## KEGG: LCRIS_00152 # Name: not_defined # Def: 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase # Organism: L.crispatus # Pathway: not_defined # 1 465 1 465 465 887 98.0 0 MNLFKHTKGIVDRIVGAKKRSAMDKDSELLDPMQKYTTVGEYHVGAVDGTPHGKDYVLTV YQDEDGVLRQALSPETTTKLAPEYLRKYNAKLGHFRAFHNKKTGRRYWVENYLDNFTTEV KKHIRPGTNSVNIGVITDTHFKDKDSSDFYGFNGLQHVQEFSYLDQSGLLDLKVHLGDWI DGSDAGLVSESELVKLNKSFKSDQVPYLSIKGNHDENDKFDEHHDLKASFPENEFENIMW PDMYRQRGIHYVSRQHGVAYFDLDDVRVISVNTSDVPYELNNRGQKRYDNKIVLAVREDQ IEEIIEILANSSNKKIIFMSHANPINRKGSNALKYNGRSLHELLVAFNQREKGRMHASNG VPAEFRLSNSFDFTNIKNARIIAYFCGHRHREYQYRINGIQYILFNCSALMGPNHSLTTK YNKNLDRRIDQNNEFAGYIVNVDLKRHRIQSLGYGAASRRRVYFI >gi|256541355|gb|ACPV01000119.1| GENE 4 2827 - 4776 2171 649 aa, chain + ## HITS:1 COG:L0095 KEGG:ns NR:ns ## COG: L0095 COG0367 # Protein_GI_number: 15674210 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Lactococcus lactis # 1 624 1 615 625 635 49.0 0 MCGIVAFYDPKINEKQAVIGKMMATIKHRGPNSDGYYTNDEVALGFRRLSIIDLRGGAQP IYNEDKTRAIIFNGEIYNFKPLREQLIKAGHTFTTKADTEVLLHGYEEWGMDGLLKKVRG MFAFLIWDDNNKTLYGARDFFGIKPMYYSNQDGHLLVGSELKSFLEYPKFKRELNVEAVK PYLMNQYNDLEETFFKGVYRFPAGHWFEYKDGEMKTHQYWDAEYKENSLSFEETLKRIND DLKETVDLYRIADVKVGAFLSEGIDSSYLTTLLNPDDVFSVSFDDSTYDEASKAKALADI NHWKFYSDKVDADEAMRDFPEMQYHMDEPDANPSIIPLWYLCKLARKHVTVALSGEGADE LFAGYVNYGMHTHNDIIKVFTSELKKLPEKKRVKLAHKIKRMPNFPGKVHMYTNLAEPSE FYVGQSVIYDMDYPTIFTSKDANSILQPTYRNKLTVNGIYQKDFKKVKGVDNVKQMQYID LHHFMLNDIEQKADKISMAHSLEVRVPYLDKKIAELANSIPTKYLVNRHDTKYALRKASE KVLPDEWAKRPKLGFPTPIKQWLKEPRFYKQVHALFEEEFVNDIFDQKKIIKLLDDNYEG DGSHRRQIWAIYTFLVWYKLFFVDYENTVKKYQHVQPEVAKLISQGKLL >gi|256541355|gb|ACPV01000119.1| GENE 5 4798 - 6081 1438 427 aa, chain + ## HITS:1 COG:L93420 KEGG:ns NR:ns ## COG: L93420 COG3919 # Protein_GI_number: 15674209 # Func_class: R General function prediction only # Function: Predicted ATP-grasp enzyme # Organism: Lactococcus lactis # 2 410 4 406 408 415 52.0 1e-116 MSKKFTPILLGSDINVYGMARSFNEAYGIKVKALADVQLAATRYSSIVDVELHHGFSSDP TFMDVMHKKMEEYKNHEEPVILIACGDGYAELLSKHQDELKKVFIVPYIKYDLLEKLISK EGFYEIAEEYGLPYPKTKIITMDDYKSGKYEDVPFDFPVELKPEDPVSWLKCQFEGRKKT FAIQDKAEFKDIVTKIYTHGYNADLILQDFIPGDDSNMRTLNAYVDKNHQVKMMCLGHPL LEDPTPQSIGNYMAILPEYNEKLYEEVQQFLEKLNYTGMANFDIKYDPRDGEFKFFEINL RQGRSSFYVTLNGYNLAKWYIDDYVEDALKDKETVYGNKLESKYKLWLGVPKKIFNNYAY DNDYKTTADELIREGRYGTTVFYDKDRNFKRWLLMKYMFHNYFKRYKTYYEVNKGKIFDE ENKKLNK >gi|256541355|gb|ACPV01000119.1| GENE 6 6255 - 8462 2200 735 aa, chain + ## HITS:1 COG:SP0202 KEGG:ns NR:ns ## COG: SP0202 COG1328 # Protein_GI_number: 15900138 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Streptococcus pneumoniae TIGR4 # 17 717 12 722 735 937 63.0 0 MLKEEFNQQNVTKFNTPKTFVKRDGSKYPFAIFKLNMVLHNLDLDNVAPAVIEKIVAKLD AADEVNAQDVAVAFRDSLNELGYLDEAKAYVQYRKHDEEEWIKQTDTRARLKRMVNGDPT IVNENANKDSEVFSTQRDLTAGTVGKTVGLTMMPEHIAKAHLRGDIHWHDLDYTPLSPMT NCCLIDFKDMLTNGFKIGNAYMTSPNSINVATHQVTQIITNVASSQYGGCSFDRADEVLA PFAEKNYQKHLKDAGKFIDDPEKLEEYAKSQTKKDIYDAMQGLEYEINTMFSSQGQTPFT TLGFGLGTSWIEKEIQKDILRIRIKGLGRERRTAIFPKLVFTIKKGLNLHPGDPNYDVKQ LAIQCSTKRMYPDVLMYDTIKKITGSFKAPMGCRSFLQGWKDENGKEVNSGRMNLGVVTV NLPRIAMESHGDKKLFWEIFNTRMRTCHQALAFKGRRAIQAKPENAPIMYQYGVFGKRLK PGDDVNELFKNGRATISLGYIGLYEVGTVFYGPDWEHNEEAHDFTIEIVKKMHDLCAKWE KEDPYHWHYSLYSTPSESLTDRFCRLDTAKFGKVKDITDKEYYTNSFHYDVRKHPTPFEK LTFEAPYPYYAAGGFIHYCEYPNLKQNPAALEAVWDWAYDKVGYLGTNTPIDKCYKCGFA GEFKSTAKGFECPKCGNHDPATCDCVKRTCGYLGNPLKRPMVHGRHEEIVHRVKHMDFGM EDSLATEEEVKNGEY >gi|256541355|gb|ACPV01000119.1| GENE 7 8462 - 9175 595 237 aa, chain + ## HITS:1 COG:SP0205 KEGG:ns NR:ns ## COG: SP0205 COG0602 # Protein_GI_number: 15900141 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Streptococcus pneumoniae TIGR4 # 54 235 3 183 196 263 69.0 2e-70 MPEKDKNTQEGPDIRSNLIKVNMGGDTMFVDPDQYKPQLDHQRELKRMHRKPKNPKPQEW KTEDYSKHKIADYKPFNFVDGEGVRCSLYVSGCLFDCPGCYNLAAQNFNYGFPYTQELED RIIKDLGQPYVQGLTLLGGEPFLNTWVCLRIINRIRKEFGHSKDIWSWSGYTWDELQKET PDKKEMLSKIDILVDGRFMNDLKDLTLQFRGSSNQRIIDVPKSMKAGKVVIWDKLQK >gi|256541355|gb|ACPV01000119.1| GENE 8 9227 - 9805 545 192 aa, chain + ## HITS:1 COG:SP1074 KEGG:ns NR:ns ## COG: SP1074 COG2151 # Protein_GI_number: 15900943 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Streptococcus pneumoniae TIGR4 # 4 103 9 108 109 97 50.0 1e-20 MEEKNIKQVDQIMTALTQVIDPELQVDVVNLGLIYGIDIEGDKATIKMTLTIMGCPLSDY LERHIQKAVLSVAGIKSCDIKLVWYPVWTTERLSSAAKKQLGVTNHDDQIKQEKATKEKI IDFSVPIKKMADEYPDFVQIMYDCGFTRIKIPGLLKTVGRVMTIPLGAQAMKLDLAKVKK AFEDKGYKVIND >gi|256541355|gb|ACPV01000119.1| GENE 9 9798 - 10994 911 398 aa, chain + ## HITS:1 COG:L52568 KEGG:ns NR:ns ## COG: L52568 COG2461 # Protein_GI_number: 15673592 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 2 396 8 443 490 310 40.0 4e-84 MTDKKRQDAILKILHYIQNGGDFATAKKMFQEEFDQVDVAEITAAERELIKQGLNPAEIQ YLCNVHADVFKGNIKENAVNPDFATPGHPVHTIKLENMVLKSLVNDALLPDLKKYQAGQD TLDKIRKELSDLATIDKHYRRKETSLFPLMNKYGITAPPEVMWGVDDDIRDLIGDASKIA GEEHPDKDQLAEAIKKASHEVLEMIFKEESIMIPMIDEVADQDDWYNVKREESQIGYTLI RKPMNWKPKEAKKEAGPISVSNLSSFLINFEEGRLNLEQLNAILDMLPFALTFIDEHDKV AYFGGGAEIYPHSRNAIGNDVFSCHTAKSRPLIKKIFAQFHSGEVDKYEFHFTPHKMKRC LYLRYYAVRDKNGKYLGCLEVAQDVTEIRSWTEEKKKI >gi|256541355|gb|ACPV01000119.1| GENE 10 11111 - 12328 996 405 aa, chain + ## HITS:1 COG:SA1580 KEGG:ns NR:ns ## COG: SA1580 COG0477 # Protein_GI_number: 15927336 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 17 375 9 364 393 194 31.0 3e-49 MRTAHGKQPADEIKLHWLLLGQLLTWLGSSFIWPLTSVYLHDHLGVSLALVGVVLLFNCV ANMIGSFISGWCYDHMDPYVLLIVGAALDAAVLFGMALNHSWPLYWLWMTLTGFLGGWNG ALINSIATSIKSKPGRYVFNMIYFAQNVGVVCGTLAVGYLYDYSVTLLFVIAGLLFVGVC VNAIINYRPMIQFHKERLANKGESKKKTFEPMPKYNLIMSIGFFVTIAVIWLMYMNWESN LSVYMVSLGIPFHLYSLLWTINAGIIVIVQAILSRFTIFKSLFRQILFGTLMFAISFVTL IFAKDFAHFALSMVILTLGEATAMPSIPTYVNDLSPDSSKGKYQGLTLSASSIGRALGPL FGGLIIEDFGYIQFFAVAAIGIFLLLVMLIPMHAKLQKKLKLFVK >gi|256541355|gb|ACPV01000119.1| GENE 11 12409 - 14355 2533 648 aa, chain + ## HITS:1 COG:L49741 KEGG:ns NR:ns ## COG: L49741 COG3590 # Protein_GI_number: 15673785 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Lactococcus lactis # 20 648 3 627 627 484 43.0 1e-136 MYFNVRGGAGDITKANTSARLQDNLYLAVNSEWLEKAKIPSDRSRTSSFDGIDLNIEKNL MQDFADFAAGKKELPTVPNFKKAVELYKVAKNFDKRNADGAAPIQADLHEILDLRNFADF NLKAADFYKNGFAVPFAFSVEADMKNTKIHSLNFGGPSTFLPDTTTYKTPAAEKLLDVLK KQSIKLLTMAGLDEKDAEDYADLAIKYDAKIAKVVKSTEEWADYPATYNPVSLTDFEAKF DSFKMDYFLGGLFTKKPERIISTEPRYLDHAEELLNEENFAEIKAWMLVKFINGVAYSLS QDFREAAFPFSQALSGQPELSSGVKQAYHITNGDFGEVVGVYYGQTYFGAEAKADVTDMI HKMLDVYEKRIRENSWLSQATKDKAIVKLRALILKIGYPDKIEEIYDRLQVDPTASLYEN EVQFGREQIKYNLEKLYQDVDRTVWLMPGDMVNACYDPQRNDLTFPAAILQKPFYDLKQS RATNYGGIGVVIAHEVSHAFDNNGAQFDEFGNMKNWWTDEDFAEFKKRTQAEIDLFDGIE YGPVTLNGKQIVSENIADQGGLTAAVEANKGEGGDKKAMQELFENFARVWTTKQLPESIK TQVSIDVHAPGPERANVQSQCQEEFYKAFDVTENDGMWLAPEKRVVIW >gi|256541355|gb|ACPV01000119.1| GENE 12 14529 - 16550 1796 673 aa, chain - ## HITS:1 COG:SPy1414 KEGG:ns NR:ns ## COG: SPy1414 COG3158 # Protein_GI_number: 15675333 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Streptococcus pyogenes M1 GAS # 7 670 11 666 666 657 51.0 0 MNNKAKRMSAAGLLIAIGIVYGDIGTSPLYVMKSIVEGNGGIGNVNRDFIIGSISLVLWT VTLLTTLQTVIIALKATNHGEGGIFALYTLVRKRAKWLVLPALIGGAAILADGTLTPAVT VTTAIEGLKGLNFGGNVPVSTQNMVIAITVVILLVLFSIQKMGTSIIGKAFGPIMFLWFT FLGVMGVMNMVGDWSILQAINPIYAIRLLVSPYNKAGIFILGSIFLATTGAEALYSDVGH VGKSNIIGSWPFVFVCLSLNYFGQGVWILNNPTYRPADGGVLNPFFEMIPANIRLFAIIL ATIAAVIASQALITGSFTLVAEASGLKFLPRMNINYPSNEKGQIYIPSINKGICVATIAI VLYFQTSAHMEAAYGLSITISMLMTTILLYEWLVMKKVNTVWNWIFLIFFGVLDIMFMIS SLTKFTHGGYVSLFIAGAIGFIMYVWYYGNKVRDKREARNAYVRLDEYTDMLTNLSHDEN YPTYATNLVYMANVKYNKFIKREILYSILDKRPKRAKAYWFVTVNVTNEPFTAEYAVNTY GTKNVINIQLYLGFKKQTSVNVYIRQIVHDLIADGTIEPQPQEYTTSPGRDVGDFSFVIV NDVISPQTQLVGYEKWLVEARVRLQNLSSNPASWFGLEYADTVIERVPLILGRPNPSYIK RIKPKDYSTAKTK >gi|256541355|gb|ACPV01000119.1| GENE 13 16772 - 17206 513 144 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00162 NR:ns ## KEGG: LCRIS_00162 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 144 1 144 144 223 97.0 2e-57 MTEEEKNAQAQADKENEENDDFKVVMPEANKTTMPQEEFKEQPDYLKVFANFYIAEFDED DLEVINLYDENHNMVDINRYVLNNIHFPRKKLVDHVLQYHDYNFKDLLKAMEEKTGVKPE EMLTYEAWEKWDEDQRTKIPSSLS >gi|256541355|gb|ACPV01000119.1| GENE 14 17398 - 18477 722 359 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00164 NR:ns ## KEGG: LCRIS_00164 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 249 359 1 111 111 210 96.0 5e-53 MYNENPFDAEFGGIPELYLDFNDDAVKFAQRAHRLKKHPTYSLFITGVRGSGKTVFMNKV GKELKKYKDTMVVTLHNSDDLFRMMYIKLVPMLDKIKKWTPSISIKVPFVSVDFTEANEK HDEIYYKVEINKILKALNKVGIRVAFCIDEVSNTPTIQKLAEEFNDWSLNNYQVSVIMTG LLSEVAELSGTHNLTFLVRADRFHVSKLFASSIARTYMDVLDITAKQAEILADMSKGYAY AFQLIGDLMYENLSQKMTFEKALEYTKLRFRDVLFNQAYDVIAHELTDVDFQFLYAMAQD NSISSIIRTMQKSKQYVNSYRAKLIKYDLIKPIIRGKVGFTLPLFRDFIQAKYDELNWG >gi|256541355|gb|ACPV01000119.1| GENE 15 18546 - 18740 320 64 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00165 NR:ns ## KEGG: LCRIS_00165 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 64 1 68 68 82 92.0 3e-15 MDYETKLAEEREYGEEKGILSAIKKIIYRNRSYGVSDSKTLEDLTEDYHDSVSRDQIEQM MKEA >gi|256541355|gb|ACPV01000119.1| GENE 16 18889 - 19263 406 124 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00166 NR:ns ## KEGG: LCRIS_00166 # Name: not_defined # Def: transcriptional modulator of MazE/toxin, MazF # Organism: L.crispatus # Pathway: not_defined # 13 124 1 112 112 212 99.0 3e-54 MRRIDVHQGDIIMIDAEPHAGHEMGGHDSEKGNIRRRYLVVSRHAYTKKSGLVIGLAITH NHITDDPFRFYVLDYASHTNGDALLFQMLSYDFIARHGKIIGHIKESTEFDNLLQQVRNI FSKE >gi|256541355|gb|ACPV01000119.1| GENE 17 19250 - 19525 266 91 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00167 NR:ns ## KEGG: LCRIS_00167 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 91 1 91 91 147 98.0 2e-34 MVVKARKQGNSIVLTIPSTIKVPLNTEFSVDVNKNGDIVYKRIAKNNYDLWSDPAYDDYD YDTEIKREYQELGYNPREVKPVGKELANEKD Prediction of potential genes in microbial genomes Time: Wed May 25 05:50:57 2011 Seq name: gi|256541354|gb|ACPV01000120.1| Lactobacillus crispatus 125-2-CHN cont1.120, whole genome shotgun sequence Length of sequence - 1518 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 31 - 62 2.1 1 1 Tu 1 . - CDS 75 - 491 358 ## LCRIS_00168 putative protein without homology - Prom 604 - 663 9.8 + Prom 339 - 398 4.1 2 2 Op 1 . + CDS 645 - 860 363 ## LCRIS_00169 hypothetical protein 3 2 Op 2 . + CDS 898 - 1167 433 ## LCRIS_00170 hypothetical protein + Term 1334 - 1370 3.3 Predicted protein(s) >gi|256541354|gb|ACPV01000120.1| GENE 1 75 - 491 358 138 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00168 NR:ns ## KEGG: LCRIS_00168 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 71 1 71 139 80 100.0 2e-14 MKKLVFWGVIAAMFILGGGGAGAYISHANTQTHNNTSYNNSNKKNADPDQQKSNNSDADS NKDNSSQDDSAKSSSDKDKEQSKKSSSSNKKSDDQSSSSSSSSDHQQEQSSSSQSSAASS SNDQSSAVSSSSAADDNK >gi|256541354|gb|ACPV01000120.1| GENE 2 645 - 860 363 71 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00169 NR:ns ## KEGG: LCRIS_00169 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 71 1 71 71 107 100.0 1e-22 MNYELTEQSIQYVFGNKKYKNGQKTRNLKNVKTGAKADELQKVGQAIASLQEDSLDEAYL VQKSRLVPAAE >gi|256541354|gb|ACPV01000120.1| GENE 3 898 - 1167 433 89 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00170 NR:ns ## KEGG: LCRIS_00170 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 89 2 90 90 141 98.0 6e-33 MAKTTKTMKLTFLNGEKKKISITLGDAVDNLTADQVRGAMNTIAEADAFEKDGVAYYHTP QSAAYIERTVTDIFNDSAESAVEPAAKQD Prediction of potential genes in microbial genomes Time: Wed May 25 05:51:04 2011 Seq name: gi|256541353|gb|ACPV01000121.1| Lactobacillus crispatus 125-2-CHN cont1.121, whole genome shotgun sequence Length of sequence - 2688 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 4, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 47 - 352 286 ## LCRIS_00173 hypothetical protein - Prom 386 - 445 5.5 2 2 Tu 1 . - CDS 518 - 1009 508 ## LCRIS_00174 RNA polymerase sigma factor - Prom 1158 - 1217 5.3 - Term 1195 - 1222 0.1 3 3 Tu 1 . - CDS 1223 - 2092 650 ## LCRIS_00175 hypothetical protein - Prom 2157 - 2216 6.9 + Prom 2249 - 2308 8.1 4 4 Tu 1 . + CDS 2363 - 2653 249 ## LCRIS_00176 hypothetical protein Predicted protein(s) >gi|256541353|gb|ACPV01000121.1| GENE 1 47 - 352 286 101 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00173 NR:ns ## KEGG: LCRIS_00173 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 100 33 136 139 147 84.0 8e-35 MIDFLDYMNGIINHPEGYIASLQKDVDHYVNSGKWVEDMDKLEYEMNEVAKKVKIEDAKK LVLTIKRMDGTKDTALQELTNSYGETLNRDEIIKLVHKVYQ >gi|256541353|gb|ACPV01000121.1| GENE 2 518 - 1009 508 163 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00174 NR:ns ## KEGG: LCRIS_00174 # Name: not_defined # Def: RNA polymerase sigma factor # Organism: L.crispatus # Pathway: not_defined # 1 163 1 163 163 262 90.0 2e-69 MTSQKYFEEAWKNRKLVGGALKAAHVRPDYHLYEDLLQEGVILYAEMLRKLDGQKVRSEI NKLSFKRVLWQTIDALRREQRVCERNTAIDKAYDLGKTEAWDNLVALKNEIKKLSQLEQV ILFEHLLEKKTITQLVKECGIPRITLKRLKKQLLGKLRNVMEQ >gi|256541353|gb|ACPV01000121.1| GENE 3 1223 - 2092 650 289 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00175 NR:ns ## KEGG: LCRIS_00175 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 289 1 289 289 535 97.0 1e-151 MNVSAYKQRNLGIISLPTDIKYRNWSKDLTKWRIENDAQLAQYITYDNKYRLNKNTLAVY EFKQHPILGKYKAVAFDLNRGIVLSQKSTYAMMQGLMRHAVHCDMIWQRMLAREAGVDIY QGIVMYNVLYFSMHAFSGNFFTDWICLHWIKDFHVKRHDQAIFNSIALDKNGLVYNFAFD SPKPNLTKIIGQYLFHNHYYSDLYYQHMLQENNLRVTAINSDSILHNSNYYVQLDLYAID SFKKLADKFYNHVLNLHLLTIVKEFKPLDYLHREHRFFTKQIIKIRYNR >gi|256541353|gb|ACPV01000121.1| GENE 4 2363 - 2653 249 96 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00176 NR:ns ## KEGG: LCRIS_00176 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 96 182 297 297 149 81.0 2e-35 MKDLPVHGDKLFDRAQKRIESMNADPEWRDTIMDFETRMLEREQVGEKKGLKTGALTLVA SLKDVGCNSQQILQQLKQKYGNVFSDKQLEEFLKQS Prediction of potential genes in microbial genomes Time: Wed May 25 05:51:15 2011 Seq name: gi|256541352|gb|ACPV01000122.1| Lactobacillus crispatus 125-2-CHN cont1.122, whole genome shotgun sequence Length of sequence - 1089 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1088 1427 ## LCRIS_00177 S-layer protein Predicted protein(s) >gi|256541352|gb|ACPV01000122.1| GENE 1 2 - 1088 1427 362 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00177 NR:ns ## KEGG: LCRIS_00177 # Name: slp2 # Def: S-layer protein # Organism: L.crispatus # Pathway: not_defined # 1 361 35 402 490 214 48.0 6e-54 TVNATNSNQDYSHINLNGNVTSTNNVTNVNPSFSLTGATKTTPGNLTGSISATFNGTTAS ANLFDGQNGHANVKITASDNSVIYDGTASTVVNNLNKLVAGQSYNVVVNNIGFNFGANNA GKEVTLAMPKNSPFSFDEASVRAAGWTVATTTNGKATAIKGKLDNNGTVNKLVVNGTLTA LDATNTNNVVFYNVANGQPVTAGNVDVVANANGQLNVSALLPAVQSSFVAVQKVLGANNN TNGGRDDNPAVETYPIVASSDIADQLKAEGITVDANGNFNAKHSFTLKVKSTSEGKATSN GKSAEMTVTFTTANVAEEVAPSVSKTIMHNAYYYDKDAKRVGTDKLTRYNSVTVSPKTTT IN Prediction of potential genes in microbial genomes Time: Wed May 25 05:51:34 2011 Seq name: gi|256541351|gb|ACPV01000123.1| Lactobacillus crispatus 125-2-CHN cont1.123, whole genome shotgun sequence Length of sequence - 46255 bp Number of predicted genes - 42, with homology - 42 Number of transcription units - 21, operones - 12 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 45 - 347 430 ## gi|256844313|ref|ZP_05549799.1| predicted protein + Prom 553 - 612 6.2 2 2 Tu 1 . + CDS 637 - 1863 1664 ## COG1705 Muramidase (flagellum-specific) + Prom 1891 - 1950 2.5 3 3 Op 1 . + CDS 2027 - 2974 1097 ## COG5632 N-acetylmuramoyl-L-alanine amidase + Prom 2977 - 3036 7.3 4 3 Op 2 . + CDS 3062 - 4900 1703 ## COG0475 Kef-type K+ transport systems, membrane components + Term 4910 - 4954 4.6 - Term 4892 - 4949 16.3 5 4 Op 1 . - CDS 4955 - 5602 634 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) 6 4 Op 2 . - CDS 5620 - 6585 1056 ## COG0673 Predicted dehydrogenases and related proteins 7 4 Op 3 . - CDS 6594 - 7400 888 ## LCRIS_00188 DNA polymerase - Prom 7421 - 7480 2.1 8 4 Op 4 . - CDS 7482 - 8237 559 ## LCRIS_00189 hypothetical protein - Prom 8366 - 8425 10.2 + Prom 8304 - 8363 7.8 9 5 Op 1 4/0.000 + CDS 8393 - 9085 1090 ## COG0588 Phosphoglycerate mutase 1 + Term 9113 - 9148 2.6 + Prom 9204 - 9263 8.6 10 5 Op 2 . + CDS 9363 - 9923 485 ## COG2017 Galactose mutarotase and related enzymes + Term 9956 - 9987 1.1 + Prom 9938 - 9997 5.1 11 6 Op 1 . + CDS 10029 - 11129 1050 ## COG1316 Transcriptional regulator 12 6 Op 2 . + CDS 11129 - 11743 632 ## COG0344 Predicted membrane protein 13 6 Op 3 . + CDS 11781 - 14771 2644 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily + Term 14778 - 14814 3.3 + Prom 14775 - 14834 2.3 14 7 Tu 1 . + CDS 14891 - 16267 1460 ## LCRIS_00195 fibronectin domain + Term 16472 - 16513 10.2 + Prom 16435 - 16494 3.7 15 8 Tu 1 . + CDS 16521 - 17783 607 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 + Term 17819 - 17850 1.1 + Prom 17898 - 17957 11.6 16 9 Tu 1 . + CDS 18202 - 18558 604 ## LCRIS_00197 hypothetical protein + Term 18625 - 18669 7.0 + TRNA 18676 - 18748 66.4 # Thr GGT 0 0 + Prom 18675 - 18734 76.1 17 10 Op 1 . + CDS 18783 - 20096 1563 ## COG3579 Aminopeptidase C 18 10 Op 2 . + CDS 20078 - 20749 717 ## COG1418 Predicted HD superfamily hydrolase + Term 20764 - 20811 6.3 + Prom 20809 - 20868 7.3 19 11 Op 1 6/0.000 + CDS 20917 - 22536 1943 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 22668 - 22710 7.8 + Prom 22601 - 22660 6.4 20 11 Op 2 . + CDS 22726 - 24354 1689 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 24415 - 24463 13.4 + Prom 24435 - 24494 5.0 21 12 Tu 1 . + CDS 24527 - 25672 1498 ## COG0516 IMP dehydrogenase/GMP reductase + Term 25679 - 25749 12.4 + Prom 25719 - 25778 13.4 22 13 Op 1 49/0.000 + CDS 25831 - 26760 1089 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 23 13 Op 2 44/0.000 + CDS 26769 - 27800 964 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 24 13 Op 3 44/0.000 + CDS 27816 - 28874 952 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 25 13 Op 4 . + CDS 28895 - 29839 290 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 + Term 29893 - 29927 5.1 - Term 29880 - 29913 4.1 26 14 Tu 1 . - CDS 29935 - 31251 1773 ## COG3579 Aminopeptidase C - Prom 31291 - 31350 7.7 27 15 Tu 1 . - CDS 31393 - 31818 493 ## COG0071 Molecular chaperone (small heat shock protein) - Prom 31963 - 32022 6.3 + Prom 31808 - 31867 9.3 28 16 Op 1 . + CDS 32060 - 32521 493 ## COG0782 Transcription elongation factor 29 16 Op 2 . + CDS 32601 - 33263 627 ## LCRIS_00210 abortive infection protein + Term 33272 - 33304 4.2 - TRNA 33311 - 33381 56.2 # Gly CCC 0 0 - Term 33260 - 33292 4.2 30 17 Tu 1 . - CDS 33391 - 33984 403 ## COG2135 Uncharacterized conserved protein - Prom 34038 - 34097 11.8 + Prom 33986 - 34045 10.1 31 18 Op 1 . + CDS 34102 - 35124 1286 ## COG0180 Tryptophanyl-tRNA synthetase 32 18 Op 2 . + CDS 35140 - 35619 387 ## COG2131 Deoxycytidylate deaminase 33 18 Op 3 . + CDS 35633 - 36217 598 ## LCRIS_00214 beta-propeller domain of methanol dehydrogenase type + Term 36442 - 36492 5.3 + Prom 36220 - 36279 5.2 34 19 Op 1 1/0.000 + CDS 36515 - 37468 587 ## COG0474 Cation transport ATPase 35 19 Op 2 . + CDS 37419 - 39182 1177 ## COG0474 Cation transport ATPase + Term 39185 - 39242 4.4 + Prom 39187 - 39246 7.3 36 20 Op 1 8/0.000 + CDS 39281 - 41257 2232 ## COG0143 Methionyl-tRNA synthetase 37 20 Op 2 3/0.000 + CDS 41257 - 42024 748 ## COG0084 Mg-dependent DNase 38 20 Op 3 7/0.000 + CDS 42011 - 42577 668 ## COG1658 Small primase-like proteins (Toprim domain) 39 20 Op 4 2/0.000 + CDS 42567 - 43451 883 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 40 20 Op 5 . + CDS 43513 - 43770 159 ## COG4466 Uncharacterized protein conserved in bacteria + Term 43790 - 43830 5.2 + Prom 43790 - 43849 6.0 41 21 Op 1 . + CDS 43879 - 44709 1046 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 42 21 Op 2 . + CDS 44756 - 46141 1775 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) + Term 46149 - 46183 1.2 Predicted protein(s) >gi|256541351|gb|ACPV01000123.1| GENE 1 45 - 347 430 100 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256844313|ref|ZP_05549799.1| ## NR: gi|256844313|ref|ZP_05549799.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 100 4 103 103 169 100.0 7e-41 MLNKKDKTKIQELTDKTVDLIVENMGKSRKEAEQDFQKSDTYAFLWLAKRNIENEHPIIL YRMFNSELKAKPIDEEQQSFIDFMTDNTIELITQNTNWGR >gi|256541351|gb|ACPV01000123.1| GENE 2 637 - 1863 1664 408 aa, chain + ## HITS:1 COG:lin2838_1 KEGG:ns NR:ns ## COG: lin2838_1 COG1705 # Protein_GI_number: 16801898 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 45 197 155 306 340 111 48.0 2e-24 MKKRLLTSFAAAAMLTSVAVPAVNTTMMNQASSQRVSAATADQTAFLNKAAKQAVKAAKK YGTLPSVMIAQAITESGWGKSGLAVNANNLFGMKADDSWTGETYTAKTREEDKNGKSYYI TAKFRKYPSFEQSFEDNGSKLRNGVSWDPLRYKGTWIENASTYAAATKALTGTYATDSKY DKALNSHITSSNLTKYDPVTVNTTRTYTAGKDSSTYNWPTAPSVASAIGSVKAGEKVVVT KTITFHDGSSRMYIDGRGWVNGSVLDKSSSATKEPVTQAPKNVPAVSKNLMHNAYVYDQN GKKLKGKMYKTSDENGGKWINTYGTKTIKGKTYYRVGENEYIAAGNIDGSLRFLKKNAYV YNQYGNRDNNLKHKKNSQIATYGSAITINGKKYYKVGIRQYVKKSNFM >gi|256541351|gb|ACPV01000123.1| GENE 3 2027 - 2974 1097 315 aa, chain + ## HITS:1 COG:lin2703 KEGG:ns NR:ns ## COG: lin2703 COG5632 # Protein_GI_number: 16801764 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Listeria innocua # 10 305 105 423 770 154 33.0 2e-37 MLKLEGIKYNKFPGVEYQNGKPEGIVVHETDDPGATAHDEAIYFNREWKNINAYVNAFVD SKQVIQMYSPNNGTWGAGLNANNRFIQIELCEEDSRDAFAKSVNNDAIYIAKLLHRYNLK PDNACDDGEGTIWSHKAVSTFLGGTDHVDPDSYFAKWDYDMDQFYSLIEYYYDLQKKNEN TDTKDPNKIKDEVPAEVQGAVTLGHDAYVYDKNGKKTKILKLAGSPVTVLGYKIISNKKY YQIGKNEYVVATNIDATARTVKKNTYLRTRSGRIEKGNLVKKGSRVMTYGSKITIKGQKY YALNATQYVLVSDIN >gi|256541351|gb|ACPV01000123.1| GENE 4 3062 - 4900 1703 612 aa, chain + ## HITS:1 COG:SA0868_1 KEGG:ns NR:ns ## COG: SA0868_1 COG0475 # Protein_GI_number: 15926598 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Staphylococcus aureus N315 # 1 392 1 396 399 268 44.0 3e-71 MAQLSLFLVVLLALVIPIFMARFKISTVPTAIAEIIVGIIVGSSGFNIVVSIHDLTFLSN LGVILLMFLSGMEINFDLLQRKNNPKAKSQAGKTVDPLPTALTAFAGIVVMAFVLAYVLK LIGLFSNVILAAIIFMTIALGVVIATLKEKDILGRPIGQTILLTAVLGEVIPLLLLTIYA SVNGGNAGQLWLIILLFIAAIILLRRFKQPYLWFSKVTKATTQLDIRLAFFLIFALVTVA ERVGAENILGAFLAGMVMKLLEPSEATKDKLTSIGYGFFIPIFFIMTGVGLNLKSLFAHP SSLMLLPVLVIFLFLAKAPVVFLYMRYFEKKNAFAGGFLTATTITIVLPTLQVARKLHAI TSTQSDAFILAAVIVCIVSPIVFNSNFVLSPEDRMKETVTIVGANTFTVPVAHDLHDNWY TIKMFTDQQDQYETYDSRVKGLTLLDNLDNQSLERSGAFDCDIFVAAGHHDQENARMAEY AKDLGVKRAIARMNEVDSNTMARCQEAGVELFNFTNVRSALMRALIESPTVYKIMTDTNN VLYSVKVRSTSYTGRPLRDLEFVDKITVSRIRRGDEWLIPHGWTVIEPNDILIFSGEFKV ADRVKKLLSHQN >gi|256541351|gb|ACPV01000123.1| GENE 5 4955 - 5602 634 215 aa, chain - ## HITS:1 COG:SP0860 KEGG:ns NR:ns ## COG: SP0860 COG2039 # Protein_GI_number: 15900744 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Streptococcus pneumoniae TIGR4 # 1 215 1 214 214 255 58.0 4e-68 MKILVTGFDPFGGDKINPAIEAVKKLPDSIKGAKIIKLEIPTVFNKSAQVVHDAIVQEKP DYVLNVGQAGGRAALTPERVAININDGRIPDNDGYQPLGEPIQADGDTAYFTQLPIKAMA KAIRAVGLPATVSNTAGTYVCNHIFYQVQYMRAKEFPSLKAGFIHIPFLPEQVVKRPSTP SMALADIVKGLIAAIGAIVERDGQGDIEAVEGQNH >gi|256541351|gb|ACPV01000123.1| GENE 6 5620 - 6585 1056 321 aa, chain - ## HITS:1 COG:SPy0441 KEGG:ns NR:ns ## COG: SPy0441 COG0673 # Protein_GI_number: 15674565 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Streptococcus pyogenes M1 GAS # 1 319 1 319 319 270 43.0 2e-72 MKLGIIGSGMIVHDFLTTADQVANMTVTAISSTKRSENIARELAKKYNIKRTYTDNEELM ADSEVDTVYVAVPNFLHYEIAKAALEHDKNVICEKPFVQSTTQAKELKKLADEKGLIIVE AITNLYLENFKQIQKELNKIAPIHIVNLNYTQYSSRYDAFLEGKIAPVFDPKKDGGALMD LNIYNIHLVSALFGLPDQVQYYANMQKGVDTSGILHLSYPDKQASLTASKDSYVTPRSFI EGEKGSIYFDGSTGTLDNFTVEMRNEQPKRYNLNKYPHRMAAEFNTFAQMIDQHDTQKAD EAFVNTLETMQILTKAKNSMI >gi|256541351|gb|ACPV01000123.1| GENE 7 6594 - 7400 888 268 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00188 NR:ns ## KEGG: LCRIS_00188 # Name: not_defined # Def: DNA polymerase # Organism: L.crispatus # Pathway: not_defined # 1 268 1 268 268 397 90.0 1e-109 MKLKKTIIGLSFAVLFLLGGCSKQEKKATSALTKTQVVQKAKSSFKSGQVIQSVTLGTDT SNQVALANTTFGGKTTVYHITNQTTSKGKTSSTEEWVNLNNVYINGQDTWYKADLEKLTG HNYADLTDAIMNNHMITNPSDKLVSAYKMKKSKKDGVYTYTLTAKSTDQALMKKAAAPIF DTTAQSTNQAKIFSQIKKLGKYQSMNVKAVIKGNKLSTFNVFVNMKLGKLMYVKVGQSYG NFGSHDFLRVPDSATNAKDLPTTNTKKK >gi|256541351|gb|ACPV01000123.1| GENE 8 7482 - 8237 559 251 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00189 NR:ns ## KEGG: LCRIS_00189 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 251 1 251 251 365 84.0 1e-100 MKFKHQNIIITVLLALLFLTACSKTGSKKTANLPTAKTILTSAEKTKFSSMHATWNELSN GKSLQKAEAQYTKKPTIIYANVSSSSNHYKMWIEGKSNYIQMKGTNSQRWFKTKLSKASA YGAITDNLNGTLLMPFIPNAKYFKVKQNGNDYLLTYKGNNKKIWNAIVSDSAFTALIGID LDDVKPISNEIEINVDQNYDIKNVNVTSTYKDEGHKKNFTMQIDQINQVKKLTVPASIKK SAVDLGKINTK >gi|256541351|gb|ACPV01000123.1| GENE 9 8393 - 9085 1090 230 aa, chain + ## HITS:1 COG:NMB1604 KEGG:ns NR:ns ## COG: NMB1604 COG0588 # Protein_GI_number: 15677454 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Neisseria meningitidis MC58 # 3 225 2 224 227 309 66.0 2e-84 MSKLVLIRHGQSEWNLSNQFTGWVDVNLSEKGVEEAKKAGRLIKEHGLEFDQAYTSLLTR AIKTLHFALEESGQLWIPETKTWRLNERHYGALQGLNKKATAEKYGDEQVHIWRRSYDVL PPAIDDDNEFSQAHDRRYANLDPHIVPKAENLHVCLDRVMPFWEDHIAPDLLDGKNVIIA AHGNSLRALTKYIENISDEDIMNLEMKTGEPVVYTFDENLDVVNKEKLDD >gi|256541351|gb|ACPV01000123.1| GENE 10 9363 - 9923 485 186 aa, chain + ## HITS:1 COG:L74167 KEGG:ns NR:ns ## COG: L74167 COG2017 # Protein_GI_number: 15673611 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Lactococcus lactis # 3 122 7 143 297 64 27.0 1e-10 MQTIDNSLFQVSVDENGARMAHLVSLTDQFDYLGEQESEEGMALAFPVMDQADNLANKLP WTVVDKGDTRVSLTLIDTPESYKSFPYHFEVMTTYALEGNQVNISFYLKNSSNKELPFSL GFILPTSWQSESQVNKISLTGKEHGIDLTSTDFKLSAKEGSVTAFTDKIELEAKSSRNFA LSLTLK >gi|256541351|gb|ACPV01000123.1| GENE 11 10029 - 11129 1050 366 aa, chain + ## HITS:1 COG:SP1942 KEGG:ns NR:ns ## COG: SP1942 COG1316 # Protein_GI_number: 15901766 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 33 334 9 319 338 180 35.0 5e-45 MKDRKQRSNHPHNSRVDTHSYKNRHIWVWVISIVALLAVAGAAYFASVYFRTKSAVDKTY DPKTAVKTTGEFDGKKKFAVLLMGTDTGALDRTEKRGRTDTMILAVVNPAKKRYTLVSTP RDTMAQMVGSESFKTEKINAAYELGGAKMSMDSVSKLINVPIKYYAVVNMGGIMKMIRYV GGINIRPTLSFEYGGYIFKKGKLTHMGGAGALAYSRMRYDDPRGDYGRQERQRQVITTLI KKAVSISSLSNLDSILTSVSSNVRTNLPFSAMQQIAMNYRSCANSSSSDYLHGYNAMIDD AAYQVQPTSELQRISNLVRKELGLPKETVSNNETFQNEKNIANGFSFKSEKTQHYHIYDY TEEGDN >gi|256541351|gb|ACPV01000123.1| GENE 12 11129 - 11743 632 204 aa, chain + ## HITS:1 COG:PA0581 KEGG:ns NR:ns ## COG: PA0581 COG0344 # Protein_GI_number: 15595778 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Pseudomonas aeruginosa # 8 110 7 109 189 72 37.0 5e-13 MARIWATLIGYVFGNFLTAMIVGKIFLKINPTEYGSHNPGTANMGAVFGKKWGILTCLGD LLKSLIALFIVYFAFPAHINIAYTGLGLILGHCFPIWDHFRGGKGVAVAAQVAVFYNWKA GFATLLVALVLTAIMQNLTIPPLVFMLLFSINTFLHNQEAGFVFIVITLIMCFKFWHDIV DFFTGHGKKVDILLSIKKKLGIIK >gi|256541351|gb|ACPV01000123.1| GENE 13 11781 - 14771 2644 996 aa, chain + ## HITS:1 COG:SPy0793 KEGG:ns NR:ns ## COG: SPy0793 COG1368 # Protein_GI_number: 15674836 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Streptococcus pyogenes M1 GAS # 408 994 267 822 824 236 31.0 2e-61 MSEINKKKSLNALQIICLIVAAFFMLVQMYSWGSTFGRLPLSTLMRFIPGLLGHSTMVLV PMVFGAVYSKRKVHPTEAFKFWIIAVVTLVLLYLVNFFKRPGTFNMWKLWGVFFPVLTST SVLLAGLIFSMLVQPYLYELQHRITTKQNVLLLSTLTLTGFATSAGTMIFNKSIYGIYLI LYFAWGMFLANVKIPKKVFGWSIAAGVMSFFVMFIGVPGFNGVYWYQRLSGRSGVYSWNP KFLSNIASPFLFLMVLAAFLIFRKVIVSYSAKQMHFFIPVIIFMDAPIIGGFVKSFRFTN SAGFNKFLMIVIMMLAAWGLSWLYERYLFKVKPVKRTVAFFKQHNNLAEIVEDAWTNFTA WIVENRVRLLTWGWFYVLSFASFLIESDNLRIQITTATDINAVIFLLGTRFFAIILTAIF LDAMFAIFYFITTRYWTSTVLVTVITIGWAIANKIKLDLRGEPIYPTELDEIVNWKTLMP MVGQQKIIMIAIALVIIIALTVFLEIKFPIKKKGSWKRRGIWALLSLLLFMTPVRFNHDG GIIYHINRGFDNKQSFRNPERDIQINGPLLNFLNYFDLQIMNKPTNYSKSTIQHLNEKYS KIANEINKTRKNTLKNQTIVYNLSESFVDPYTFPTIKIDPKTPNPVKFIQSMKKRATYGS MLSAGYGGGTANMEWETLTGFNMGMFNSTLTPYVQIVPNYDFYPTIGMDFNYKSAVHPFI GTYYSRVEDYKRFKFNKFVYLGSKYKIIDQKKLGKSTYNSDFTAYANGLRQINSMKGGQF INLISIQNHMPYNNWYPNNEYMGKVSGELFNTAAVREQMATYIKGTQYTNQAVKKFIGQI DKIKKPITIVFYGDHYPSILSQNYTGKYPVQMHSTRYFIYSNKYARQHGAKNKLTHNTNF VNTSDFTAMMLEQTNTKVTPYQALLTEVHEKLPAITINFNGDKGFQLVDQKGHFVDPKKL TSEQQAILNDYEMVQYDMTAGQAYGLKAKGFYKIGD >gi|256541351|gb|ACPV01000123.1| GENE 14 14891 - 16267 1460 458 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00195 NR:ns ## KEGG: LCRIS_00195 # Name: not_defined # Def: fibronectin domain # Organism: L.crispatus # Pathway: not_defined # 1 458 7 464 464 825 98.0 0 MALASAALFGSSATTVQAGTYNPKNITSFNINRRNYVAKGKIYKLHLPAAGRLVTNGNVT LKNSMEWTCIPYGKDKNTYYLRKGTYYLTSSKNISVKTTYTRLTKIRKNLETYVETKKNN DNSSLKARKIEIGQDIKAMGEVYDYDSVDYYTFTIDSPQMVTMRMTNNPIYQLGKGNIFS KMNVIMFSENNPVGGSTMLYPESFEINGNKIASQSWYLSKGNYTFSVNTRGLYNFQLTAV PDTRVVPADTEIESLQNTKDGVVANLRDARHAKTYELAWREKGSKAAPFTSSSNTTEVST APATRYIDKNDRKIPVSIGKKLVNGQSYYFVARGVSNPDYIRYGNPEKDNYFGAWSNSVE HTYYAPSDATPGAVDLTTAKADSTYHNIHVAWNKIASAQSYRIAYRQKGTNKWYYEVTDQ ATNAITGITRNRNYEVKLQALNGEKTGPWSAIKTIFVK >gi|256541351|gb|ACPV01000123.1| GENE 15 16521 - 17783 607 420 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 3 419 6 416 418 238 37 5e-62 MAKFDILEDLKWRGAINQETDEEGLRKYLAEHDDLALYCGTDPTGDSLHIGHLIPFMILK RFQMAGYHPVILIGGGTGAIGDPSGRKTERTLQTAEQVKHNEESLTNQMKKLFGTENFEI RNNAEWLSKLNLIDFLRDYGKFFQVNNMINKDVVASRLENGISFTEFTYQILQAIDFYHL NKDDGVQLQIGGSDQWGNITAGIDLIHKLEGADRPAFGLTIPLMLKADGTKFGKSAGGAV WLDPEKTSPYEFYQFWINQDDRDVVKYLKYFTFLSREEIEDLAEKTEKEPWKRAAQKKLA EEVTKFVHGEAGLEEAKMITDALFSGNIKNLSVAQIEQGLKNAPSAEAGNEKKNIVDFLV DTKIEPSKRQAREDVKNGAIYVNGDREQSTDFEVDPSSDFDGKYVIIRKGKRKYTLVTIK >gi|256541351|gb|ACPV01000123.1| GENE 16 18202 - 18558 604 118 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00197 NR:ns ## KEGG: LCRIS_00197 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 118 1 118 118 154 99.0 1e-36 MLESKKAIKIISSLVIGLSLGCVLTPIAQATSFTAPKLGTATQAPTNPAIKKGDKIFVVI KDTKNQKVAVYNKNAEKTSKKVAMGSTYTAKDVKKVNKKKIVRINKSQWLNIKDVVKN >gi|256541351|gb|ACPV01000123.1| GENE 17 18783 - 20096 1563 437 aa, chain + ## HITS:1 COG:lin2432 KEGG:ns NR:ns ## COG: lin2432 COG3579 # Protein_GI_number: 16801494 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Listeria innocua # 1 437 1 437 441 352 38.0 9e-97 MKHELTMNEIAKFQKEYEQKPQNRVAELAVVNNGVAKASLDSEKVRKLNRTFSIEIPTDN VTDQKQSGRCWLFAALNTLRHGFAKKYNAKNFTFSQNYLFFWDRIERANIFFDNILNTAD RPLSDRTVHTYMQGPDTDGGQWAMAVSLIRKYGLVPTYAQDESFTANNTAFFNRILNNKL REDGLVLRKLAQAGKNDEIEAKRQEFLSEVYRMAVIAFGQPVQKFDLEFKDDEGKYHFDG DLTPLDFFHDYFTDDLDDYIVLFNAPDHEFDKLYALPFEDNVEGGSPVHFLNTKIENLKE AAIKQLEAGETFWFGCDVGKDSDRQKGILAHNLYQTDAIFNIETKLSKKERLETGASGST HAMTMVGVDVVNGKPRQWKIENSWGNKVGEKGYFVMDDNWFDEYLFKVVVKKQYVPEKLV KIWEGKATPVKAWDSMA >gi|256541351|gb|ACPV01000123.1| GENE 18 20078 - 20749 717 223 aa, chain + ## HITS:1 COG:BH2835 KEGG:ns NR:ns ## COG: BH2835 COG1418 # Protein_GI_number: 15615398 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus halodurans # 15 222 13 212 215 130 36.0 1e-30 MGLNGIMEIKQVIDFTQTHLKNEKTGHDFYHGERVANLASQMYLADHADAHEDSRVVAII KTAGYLHDTIDEKICADPQKVIDEIKVLLPQVGFNELEAWDILFTIQHMSFSANIEHHYH LPLSGQYVQDADRLESLGAIGIARAFTYGGKHGNKIYDPEIKPAVLTSHDQYRNHVETTI NHFYEKLFHLEDLMNTPAAKKEAERRTAYMRDFVREFMQEWNV >gi|256541351|gb|ACPV01000123.1| GENE 19 20917 - 22536 1943 539 aa, chain + ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 27 537 37 557 559 360 41.0 3e-99 MKFTKLFAAGATVLIAGSTLAACGSNSNSSSSSAKKTINWMDSAEIPTMDISKATDVTSF NQLGNVEEGLYRLGKNSKVENALATDTKVSKDGKTWTFTLRDSKWSNGDKLTAKDFVYSW RRTVNPKTASQYAYLFEGIHNATQISAGKAPVNSLGVKAEGDNKLVVTLDKRIPYFKLLM GFPLFFPQNQKVVEANGSKYGTSSKTTAFNGPFVQKGWTGSNLSWKLVKNKNYWDKKNVK LDAINYSVQKTPSTAYNLYQSNKLDATILDSQQTKNLKHQKGYTLRDTAATFYLQFNQKK KIFQNADLRRAISMSINRKALGSALGGANTPATSLTSKGVVNHDGKDWSEVVGDKKNAAY NPTEAKKLYKKALKELGVKNVSFTILSDDTDSGQKTTETLQSQLEENLKGMKVSVANVPF KTRLNRSTSGNFDVVVSGWSADFADPISFVDLFTSKNAQNNGKWSNSQYDKLIADSKTTA DTTKRWDDLEKAEKILLSDEGIAPLYYKTEAWLVRPDIKGIVYNGAGLNYNFKNTYVAN >gi|256541351|gb|ACPV01000123.1| GENE 20 22726 - 24354 1689 542 aa, chain + ## HITS:1 COG:SA0849 KEGG:ns NR:ns ## COG: SA0849 COG4166 # Protein_GI_number: 15926579 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 6 542 3 540 551 345 37.0 9e-95 MKKWKKYFSASLLTVVSAATLAACSNKSSSSGTKQTLNWMTKSELQTLDLSKVTDATSLD QINNSMEGLYRLGKNSKVENALATKTEVSKDGKVWHFTLRKNAKWSNGDPVTAKDFVYSW RRTVDPKTASQYAYLFSGVKNADDVVAGKKKVETLGVKADDNQHLTVTLDRRIPYFKLLM GFGVFFPQNEHAVEKYGKNYGTSSKTMVYNGPFVSKGWTGSNLSWKLVKNKDYWDKGKVK LSKINYSVQKTPSTDYNLYQSGKLDVALLAPQATKQLKNQSGYTIRPASSTQYLQLNEKN KLFQNTDFHRALSLSVNRKALASAVGGANKPVTTFSPNSMTEVNGKDYTELVKTAETDKL MTYNPTLAKSYWKKAQKALGQSKVNFTLLTYDDDDAKKAGEYLQSTIESNLKGVNVRVNS LPKKTALVRGQNGNFDALLMGWQADFTDPISFLDLNTSNASYNWGKWANKEYDKYVAASK TTGNENTRFEDLAKAERVLLTEQGVVPLYQPAEAWMVRPTVKGVVYNGAGANYNFKYAYV EK >gi|256541351|gb|ACPV01000123.1| GENE 21 24527 - 25672 1498 381 aa, chain + ## HITS:1 COG:SP2228_3 KEGG:ns NR:ns ## COG: SP2228_3 COG0516 # Protein_GI_number: 15902032 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Streptococcus pneumoniae TIGR4 # 102 380 4 280 281 387 75.0 1e-107 MSNWDTKFAKKGLTFDDVLLIPAESHVLPNEVDLSTTLADNIKLNIPLISAGMDTVTEGA MAIAMALQGGLGVVHKNMSIQAQAGEVANVKSVVVPTSAAKAATDDQNHLLCAAAVGVTS DTFERAEALLEAGADAIVIDTAHGHSAGVLRKIKEICDHFPEATLIAGNVATGDATRALF DAGVDVVKVGIGPGSICTTRVVAGVGVPQITAIYDAATAAREYHKPIIADGGIKYSGDVV KALAAGGNAVMLGSMLSGTTEAPGEIFEDNGKKYKRYRGMGSVGAMAQAHGSSDRYFQGG VNEANKLVPEGVEARVEYKGDVSDVVFQIDGGLRSGMGYCGAANIPELIDKAQFVQITNA GLRESHPHDVQMTKAAPNYTK >gi|256541351|gb|ACPV01000123.1| GENE 22 25831 - 26760 1089 309 aa, chain + ## HITS:1 COG:lin2299 KEGG:ns NR:ns ## COG: lin2299 COG0601 # Protein_GI_number: 16801363 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Listeria innocua # 1 304 1 304 309 340 55.0 3e-93 MARYLLKRIFYMILTLLIVATVTFFLMKLMPGSPYANEAKMTLTQRQIMDQQYGLNKPIW QQYLIYIAGMLHGDFGTSFQYSNQPVASLIGARLGASVQLGLQALILGVVLGVIAGAIAA MRQGTWVDSTATVISILGKSVPNFVLAVLLQYYIGLKLGWFPIAGWGQFSQTIMPTIALA VGPFAETARFIRTSMVDTLSSDYIELGKAKGLSRMEVIRKHAMRNSMIPLVTLIGPYAVA LMTGSMVIENIFNVPGIGEQFVKSILTNDYPTIMGITMVYCIGLVVILLITDIVYGLIDP RIRLDESEA >gi|256541351|gb|ACPV01000123.1| GENE 23 26769 - 27800 964 343 aa, chain + ## HITS:1 COG:lin2298 KEGG:ns NR:ns ## COG: lin2298 COG1173 # Protein_GI_number: 16801362 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Listeria innocua # 1 340 1 341 344 314 51.0 2e-85 MTEEKLNLPADAFEPLSKDEAQDNENIAGPSLSFAQNVWLRFKQRKAAIISAIIVILMIV VAFGSTPFINKSTLVKSHPQYANLPAKVPGMSAINGLNGKIKQNGKWVDAYAQNGVPKDK YFIAGTDYLGRSLGQRIIYGTKISLIVALVAAFFDLTIGVAYGIVSGWKGGGVDNVMQRI IEIISSVPNLIIVVLMLVVLKPGIKSIILAIAISSWTTMARQVRAETLSLKNEEYVLAAR SLGESPWKIAWKHLVPNLSSIIIIQTMYTIPTAIFFEAFLSFIGIGISAPETSLGVLLNE GQKNFQFLPYQMWYPAIVLCVLMIAFNLLGDGLRDAFDPRGQR >gi|256541351|gb|ACPV01000123.1| GENE 24 27816 - 28874 952 352 aa, chain + ## HITS:1 COG:L148976 KEGG:ns NR:ns ## COG: L148976 COG0444 # Protein_GI_number: 15672329 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Lactococcus lactis # 1 343 1 346 349 478 68.0 1e-135 MPEERVLDVKNLKIDFHTYAGEVKAIRNVSFHLNKGETLAIVGESGSGKSVTTRSIIGLL ARNAQIEDGEIDFHGKNLLELSEKEMQKIRGNEISMIFQDPMTSLDPTMKIGQQIAEPLI KHKGASKKEAWAKALEMMKAVGIPNAEERINQYPHQFSGGMRQRIVIAIALICEPEILLA DEPTTALDVTVQAEILDLMKDLQKRVKTSIIFITHDLGVVAGMADRVAVMYAGEFLEFGG VDEIFYDPQHPYTWGLINSMPTLNSDTLESIPGTPPNLLDPPKGDPFAPRNKYAMKIDVE RKPRFFKVTDTHYAATWLLAPGAPKVEPPAEITRRWKKYNLMKQEDKLPEVN >gi|256541351|gb|ACPV01000123.1| GENE 25 28895 - 29839 290 314 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 1 252 1 258 563 116 30 3e-25 MPEKKKILEVKHLKQYFKNGRNVTKAVDDVSFNIYEGETFGLVGESGSGKTTTGRSILQL YKPTSGEVIFEGKNVADLKSRADKLAFTRDAQMIFQDPYASLNPRMTVEDIIAEGLDIHH LVKNKDERTERVEELLETVGLNASHASRFPHEFSGGQRQRIGIARALAVEPKFIVADEPI SALDVSIQAQVVNLMIELQKKRGLTYLFIAHDLSMVKFISDRIGVMHYGKLLEVGPADDV YDRPLHDYTKSLISAVPIPDPEVERSRTRIPYDAQKEEMDGKQRSMHEIRPGHFVRCSDD EVKHYEEVAASYEN >gi|256541351|gb|ACPV01000123.1| GENE 26 29935 - 31251 1773 438 aa, chain - ## HITS:1 COG:lin2432 KEGG:ns NR:ns ## COG: lin2432 COG3579 # Protein_GI_number: 16801494 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Listeria innocua # 1 438 1 437 441 335 40.0 1e-91 MAHELTVQELEKFSAEFNKKPENKVVARAAQRSGVLEASYNDRVQGQLTRVFSTELDTNN VTNQKHSGRCWLFATLNVLRHAFGKKYKAKDFTFSQAYNFFWDKIERANMFYNRILDSAD MPLDSRQVKADLDFAGSDGGQFQMAAALVEKYGVVPSYAMPETFNTNDTTGFATALGDKL KKDALVLRHLKQYGKDDEIKKVREKFLSEVYQMTAIAVGEPPKTFDLEYRDDDKKYHLEK NLTPLEFLHKYMGDVDFDDYVVLTNAPDHDYNKLYGLPAEDNIEGSLRIKLLNVPMEYLS SAAIAQLKDGEAVWFGNDVLRQMDRKTGYLDTNLYKLDDLFGVDLKMSKADRLKTGVGQV SHAMTLVGVDEDNGEVRQWKVENSWGDKSGVKGFYVMNNEWFKDYVYEVVVHKKYLTENQ KKLAEGPITDLPAWDSLA >gi|256541351|gb|ACPV01000123.1| GENE 27 31393 - 31818 493 141 aa, chain - ## HITS:1 COG:TM0374 KEGG:ns NR:ns ## COG: TM0374 COG0071 # Protein_GI_number: 15643142 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Thermotoga maritima # 39 129 44 133 147 68 39.0 3e-12 MANNMMNRRNDMMDAMNDWFGFPRNFFDDNEIENIMQSDVAETDKDYLVKIDMPGMDKQD INVNYNDGTLNVSGTRKSFKDTSDKNRNIIHKERSEGSISRSYRLPNVVASEIHAKYDNG VLTITLPKETAGNDGNSIQID >gi|256541351|gb|ACPV01000123.1| GENE 28 32060 - 32521 493 153 aa, chain + ## HITS:1 COG:HI1331 KEGG:ns NR:ns ## COG: HI1331 COG0782 # Protein_GI_number: 16273242 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Haemophilus influenzae # 7 152 6 155 158 87 36.0 8e-18 MVYFQKMTPEGYQQIEDEIARLKKDRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQS RLRYLGKQLKYAEIVKAEDDGKVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKVSFD SPLGQAIMKKEAGTTATVAAPAGEYQVTIVEVK >gi|256541351|gb|ACPV01000123.1| GENE 29 32601 - 33263 627 220 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00210 NR:ns ## KEGG: LCRIS_00210 # Name: not_defined # Def: abortive infection protein # Organism: L.crispatus # Pathway: not_defined # 1 220 1 220 220 345 99.0 6e-94 MNTPQSREGNVIRYAVYLAGYVAVFAVVKLVTRKSPAHIWDLILFGLVAAMILLFYVYRF NREQRFFARDFKLPWLGSLSTVVLLTLVITVTQISISYLQSYGRISHYDFQLIYAKSESV NMFWFLIVVQGIVLPILQEFLATGFLFNYAFRRNTKQVAIMGIIVSGLIYSLLSFQNSVV LFIIDAIYGMVFAWSYMYTQTLLMPIYLAVVSGVLTVIMI >gi|256541351|gb|ACPV01000123.1| GENE 30 33391 - 33984 403 197 aa, chain - ## HITS:1 COG:SMa0882 KEGG:ns NR:ns ## COG: SMa0882 COG2135 # Protein_GI_number: 16262936 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Sinorhizobium meliloti # 1 175 1 172 196 59 26.0 4e-09 MCNQFRLPNLKQIQQYLKSDLDLPLVTPNFDIQAQDIFPNQVAPVLLYQNGQLQLNNKKW GYPSPVDPKKPLFNARIERFYDSAPSMWDKSFAKQRCLILTEKFFEYAKTTHIAENGRKY HDSYAFRTNQPLTLIAGIYDQDYFSMVTTAPNKDMAPIHNRMPLVVMPNELRRWLFQNFT SLIDRKSVDLQIEKMLK >gi|256541351|gb|ACPV01000123.1| GENE 31 34102 - 35124 1286 340 aa, chain + ## HITS:1 COG:L0358 KEGG:ns NR:ns ## COG: L0358 COG0180 # Protein_GI_number: 15672048 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Lactococcus lactis # 1 338 1 341 341 459 68.0 1e-129 MAKEILLTGDRPTGKLHIGHYIGSLKNRVKLQNSGKYDPYIMIADTQALTDNARNPEKIR NSLIQVALDYLAVGIDPAKSTIYVQSQIPALFELTAYYMDLVTVARLERNPTVKTEIKQK DFKDSIPIGFLNYPVSQAADITAFKATVIPVGDDQEPMLEQTREIVRTFNRVYNCDVLVE PKGYFPPKGQGRLPGLDGNAKMSKSLGNAIYLADDAKTVQKKVMSMYTDPNHIHVEDPGK VEGNTVFTYLDVFDPDKDKVAELKAEYQKGGLGDVKIKRYLNKVLEAELAPIRERREKFA QDEDAVYEMLLEGSKKANKVANATLEQVRDAIGLNYFKNR >gi|256541351|gb|ACPV01000123.1| GENE 32 35140 - 35619 387 159 aa, chain + ## HITS:1 COG:SPy1823 KEGG:ns NR:ns ## COG: SPy1823 COG2131 # Protein_GI_number: 15675651 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Streptococcus pyogenes M1 GAS # 1 139 1 139 153 188 60.0 3e-48 MHDRIPWKQYFMMQALVIAQRSTCNRALVGSVLVKNNRIIGTGYNGSVSGQPHCDDVGHQ MVDGHCVRTIHSEMNAIIQCAKFGVSTENTEIYVTHFPCYNCCKSLLQAGVKKINYYFDY RDNPLAMQLLHDSGVPYEQIKINRKYVESLAHKLEEDEN >gi|256541351|gb|ACPV01000123.1| GENE 33 35633 - 36217 598 194 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00214 NR:ns ## KEGG: LCRIS_00214 # Name: not_defined # Def: beta-propeller domain of methanol dehydrogenase type # Organism: L.crispatus # Pathway: not_defined # 1 194 1 194 194 361 98.0 6e-99 MGLVTVFLITTGFVQPNIEDHAHILDKETRTLITEKNNRYFQTKEQPQIVVITVKRLNKL TPKMLDHSKRTVFIVVGQKGKKRNVQIYSTKDLHSAFTEVARGNILRAEVDKLRSQNNAT FNKGIRFVFRACATRVDQQYQYALDKYDLTQAEQNKVARPHSVALPIALALAFLITGITY FLRRFSHRDPISKK >gi|256541351|gb|ACPV01000123.1| GENE 34 36515 - 37468 587 317 aa, chain + ## HITS:1 COG:L85514 KEGG:ns NR:ns ## COG: L85514 COG0474 # Protein_GI_number: 15673239 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 16 294 26 302 910 185 33.0 1e-46 MLKAASKKRSNIDIQRIQRIARESRSETLARLQASAEGLSTNKAEENRREYGKNEIITNS NSSKWRLLWESIATPFTLVLLVLTLLTLFTSYILVPQGDNDLITTIVMIVMLIISVLVNF IQKIRIAKVTDQLLNMVSVTTNIRRDGKNVELPTDEVVVGDVINLSAGDMIPADMKLLTS KDLFCSSSYLDGDPEPAEKMANVVIKPSMANDYLNYPNILYEGTTIVSGSGTGIVFAIGN HTVFGKAVQAISRKKVKTTLFDREMKQLAKILIIATAIVIPLLFVINGLTKGNWGGKLNF RFDSGSWLNTRSVADYC >gi|256541351|gb|ACPV01000123.1| GENE 35 37419 - 39182 1177 587 aa, chain + ## HITS:1 COG:L85514 KEGG:ns NR:ns ## COG: L85514 COG0474 # Protein_GI_number: 15673239 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 6 584 315 905 910 499 42.0 1e-141 MTAAVGLTPEVLPIIVNSNLTRGAREISQNGAVVKQMNAIQNLGSTDVFCIDKTGTLTQN QVVLERHYDLDMQETPQILKFSYLNAYYQTGVKDLIDKAVIDAAGDELDVNEIQRDYNKI DEIPFDYTRKRMSVVVVDNDEHHGQHLLVTKGAAEGMLAISNKVELNGKVEDLTTAWREK ILNQINELNDDGLRVLLVGYKLNPAPVGEFSAKDEHDLTIIGYLAYLDPPKETTKEALED LKKDYVDVKIFTGDNEAVTRAIALQVGLNVDTVYDGTQIEAVSPEELREIVEKCDIFVRI TPELRVKIINALKANGHTVGYMGNGNKDALAMKVADVTVTSNTSVDIIKESADIIFEQKD LQLLEEMILMGRKVFSNTMKYIKTFLVTNAGSVIAMVVSSLLLPFLPLLPLQVLILNLLF SISCLVIPFDSVSKNYVKKPQKWSIKRWPKFVLNFGPILAIIDFIAMGLMFYVICPYLVG SNYHHWVFMTLFYSGIFVESLWTRIMVIHTLRDERFPFFKQHATPVVFLVTIGMAIIGTM LPSSSIAPSLGLAQLPFGYWGIVFLLEVIYILLTTLVKHLYLKKEKF >gi|256541351|gb|ACPV01000123.1| GENE 36 39281 - 41257 2232 658 aa, chain + ## HITS:1 COG:lin0216_1 KEGG:ns NR:ns ## COG: lin0216_1 COG0143 # Protein_GI_number: 16799293 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Listeria innocua # 3 538 4 542 549 714 64.0 0 MADKDTFYITTPIYYPSGRLTIGNAYTTIAADTMARYKRSQGYDTFFLTGTDEHGLKIEQ KAEAQGIKPQEFVDKMAASYKKLWKSLNISYDKFIRTTDKEHVAAVQKIFEKLLAKGDIY LGEYTGWYSVEDEEYFTESQLAEVYKDDDGNVIGGKAPSGHEVRLVKEPSYFFKMSKYAD RLVEYYKEHPEFILPHSREKEMLNNFIKPGLEDLSVTRTTVNWGIPVLSDPKHVVYVWID ALSNYITALGYGSDDDSLFKKYWPADVHLVGKEIVRFHTIYWPIMLMALDLPLPKHIIGH GWVLMKNGKMSKSKGNAVYPESLTSRYGVDPLRYYLMRALPFGDDGIFTPEDFVERINYD LANDLGNLLNRTVSMINQYQAGHVDAVPVAQAEFGKDLQDTAASVINDYRENMDSLHFSK ALDNIWKLVSRANKYIDETTPWALNKEGKKEELSKVMSNLAESLRLIAIMIEPVMTETAP IMFKQLGLNWDNEDAKHLAFGDFDWDVKVIEKPQPIFPRLKMDEEVKYIKDEMAKAKPKK TTRSEQKKGDEITIDDFDKVKIQVGQILSVEPVKGSSKLLMFKLDFGNGKETQILSGIRK FYPDASELLDKKVLAVTNLKPRKMLGHLSEGMLLSSEKHGKIKLALVGDEHAVGAELG >gi|256541351|gb|ACPV01000123.1| GENE 37 41257 - 42024 748 255 aa, chain + ## HITS:1 COG:L87336 KEGG:ns NR:ns ## COG: L87336 COG0084 # Protein_GI_number: 15672669 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Lactococcus lactis # 1 255 1 256 257 247 46.0 1e-65 MEIIDNHTHLNDEPFRGKEQYYLERAKALDVTKVICAGQDPDFNQRAVDLAQRFDNVYAM VGYCPDVAKDYDQQAEDKLIEQLKQPKVVAMGEIGLDYYWDESPRDVQRNVFARQIEVAH DLKMPVDIHTRDAFGDCYNILKNSNLEYGAVLHSFNGGVDWLNKFLDLNVYFSYSGVVSF TKATEVHESAKAAPLDRILVETDAPYLTPKPYRGHQNETGYVRYVAEAIAKLKDIPLEKV ADATYKNTVRVYGLK >gi|256541351|gb|ACPV01000123.1| GENE 38 42011 - 42577 668 188 aa, chain + ## HITS:1 COG:SP1990 KEGG:ns NR:ns ## COG: SP1990 COG1658 # Protein_GI_number: 15901813 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Streptococcus pneumoniae TIGR4 # 5 185 2 186 186 147 46.0 1e-35 MGLNKKNFDAVIVVEGKDDTIRLKQFFPGIETIETNGSAVSDEVLKQIQKLSESRQIIVF TDPDFNGERIRRIVTKAVPDAKQAFITRKEGEPHKKGSLGVEHASKEALEHALSDLHEVE PQKSDLTPAIYRQLGLAGGSGSRKLREQVGIKLRVGYGNSKQFYNRLHTFGVSLAELKAA VKEVENDK >gi|256541351|gb|ACPV01000123.1| GENE 39 42567 - 43451 883 294 aa, chain + ## HITS:1 COG:CAC2986 KEGG:ns NR:ns ## COG: CAC2986 COG0030 # Protein_GI_number: 15896238 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Clostridium acetobutylicum # 13 291 6 274 276 195 43.0 7e-50 MTNNIPIGSPVRTQAIVNRYFVKAKKNLGQNFLVDQTAILGIVEAAGIKKDDQVIEIGPG IGSLTEQLLLAGAKVFAYEVDDSLPTILQNELPKKIDDQPLASRFKLILKDVLKADFKVD ISDFFDFTKPIKVVANLPYYITTPIIFALAESDLHFTSLTLMMQKEVAERLEAQPGSKEY GPLTISVQTEMNVKLALQVSHNSFMPRPKVDSSVVVLTPLKEKPAIENRKHFIWVVKMCF SQRRKTLNNNLKALLPDKTKRDELFAELGVNPRIRPEELTIKQFIKIASFIPAR >gi|256541351|gb|ACPV01000123.1| GENE 40 43513 - 43770 159 85 aa, chain + ## HITS:1 COG:lin0228 KEGG:ns NR:ns ## COG: lin0228 COG4466 # Protein_GI_number: 16799305 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 82 1 82 85 91 56.0 3e-19 MPTSIITIKHKLDSHLGDTLTVVAQAGRKKVTKRRGILRETFPAVFVVDLDQHQNNFKHV SYSYTDLLTKNIALEFDDEAEEAEA >gi|256541351|gb|ACPV01000123.1| GENE 41 43879 - 44709 1046 276 aa, chain + ## HITS:1 COG:lin0231 KEGG:ns NR:ns ## COG: lin0231 COG0503 # Protein_GI_number: 16799308 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 268 3 270 272 269 50.0 4e-72 MKRSERLVDMTKYLMERPHTLIALPFFAKRYGAAKSSISEDLAILKHTLASNQDGILETV AGAAGGVRYIPFLGKKHAEAYLSDLSTRIEDPSRILAGGFVYLSDILGNTQDLRKIGELV ATHYAYEEIDAVMTVETKGIALAKAVARFLDVPFVTARKRSKVTEGATVSVNYISSSLSR VSKMELPTRALKKEAKVLIVDDFMKGGGTLTGMEELVKEFDGTIAGVCVLCEADFDKEKL IKNYLSLVKISEIDTAQKLIVAEPGNFLTETDFDRF >gi|256541351|gb|ACPV01000123.1| GENE 42 44756 - 46141 1775 461 aa, chain + ## HITS:1 COG:lin0237 KEGG:ns NR:ns ## COG: lin0237 COG1207 # Protein_GI_number: 16799314 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Listeria innocua # 2 448 3 449 457 491 57.0 1e-138 MEKYVVVLAAGKGTRMKSKLYKVLHKVCGKTMVEHVVDAAQGVNPAEIVTIVGTGAGDVE KVLADKSKFAFQEKQLGTGDAVMTAREELGDNDGATLVVTGDTPLFTTDTFNELFKYHAE KGNAATVLTAEAPNPFGYGRIIRDDQGNVLRIVEQKDGKPEELKVKEINTGVFCFDNKKL FEALKHVNNDNAQGEYYLTDVLEILRNSGERVGAYKMPDFSESLGVNDRIALAQATKTMQ RRINEQHMRDGVSFIDPDTAYIDADVKIGNDTVIEGNVVIKGNTEIGSDCYITSGSRIVD SKIGNNVTVTSSTVEEAEMDDNTDIGPNSHLRPKAIIRKGAHIGNFVEIKKAEIGENTKV GHLTYVGDATLGKDINIGCGTIFSNYDGVKKFHTNVGDHAFIGAGSTLIAPINVADHAFI AADTTVTKDVNKYDMAIGRGRQVNKPDYWHKLPLSQDKEWD Prediction of potential genes in microbial genomes Time: Wed May 25 05:52:13 2011 Seq name: gi|256541350|gb|ACPV01000124.1| Lactobacillus crispatus 125-2-CHN cont1.124, whole genome shotgun sequence Length of sequence - 38377 bp Number of predicted genes - 37, with homology - 37 Number of transcription units - 18, operones - 13 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 12 - 764 1063 ## LCRIS_00224 putative protein without homology + Term 775 - 825 9.4 + Prom 799 - 858 9.0 2 2 Op 1 . + CDS 895 - 2436 2007 ## LCRIS_00225 cell separation protein 3 2 Op 2 . + CDS 2366 - 2662 344 ## LCRIS_00225 cell separation protein + Term 2668 - 2729 10.9 + Prom 2763 - 2822 7.8 4 3 Tu 1 . + CDS 2890 - 3864 1348 ## COG0462 Phosphoribosylpyrophosphate synthetase + Term 3879 - 3932 6.1 - Term 3867 - 3919 9.7 5 4 Op 1 1/0.000 - CDS 3967 - 5394 1417 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase - Prom 5423 - 5482 7.5 6 4 Op 2 . - CDS 5534 - 6256 493 ## COG1737 Transcriptional regulators - Prom 6452 - 6511 7.2 7 5 Op 1 1/0.000 + CDS 6452 - 7789 1598 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 7806 - 7860 7.3 8 5 Op 2 . + CDS 7868 - 8779 287 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase + Term 8786 - 8821 5.1 - Term 8772 - 8809 6.4 9 6 Op 1 . - CDS 8821 - 9084 333 ## LCRIS_00228 putative protein without homology 10 6 Op 2 . - CDS 9118 - 10482 1210 ## COG1078 HD superfamily phosphohydrolases - Prom 10518 - 10577 7.9 + Prom 10452 - 10511 11.8 11 7 Op 1 . + CDS 10576 - 11001 333 ## LCRIS_00230 hypothetical protein 12 7 Op 2 5/0.000 + CDS 11048 - 11551 716 ## COG3343 DNA-directed RNA polymerase, delta subunit + Term 11613 - 11643 0.2 13 7 Op 3 . + CDS 11668 - 13287 2201 ## COG0504 CTP synthase (UTP-ammonia lyase) + Term 13320 - 13367 8.2 + Prom 13333 - 13392 6.6 14 8 Op 1 1/0.000 + CDS 13419 - 14717 1234 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase + Term 14719 - 14766 11.1 15 8 Op 2 1/0.000 + CDS 14779 - 15297 552 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 16 8 Op 3 . + CDS 15297 - 15785 249 ## COG0563 Adenylate kinase and related kinases + Term 15794 - 15830 1.5 17 9 Op 1 . - CDS 15840 - 17264 1683 ## COG4690 Dipeptidase - Prom 17291 - 17350 4.8 18 9 Op 2 . - CDS 17353 - 18165 851 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 18194 - 18253 4.5 - Term 18227 - 18263 4.0 19 10 Op 1 7/0.000 - CDS 18317 - 19603 404 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 20 10 Op 2 . - CDS 19610 - 20188 572 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 20348 - 20407 4.5 - Term 20199 - 20252 16.2 21 11 Tu 1 . - CDS 20422 - 21024 467 ## COG1396 Predicted transcriptional regulators - Prom 21270 - 21329 3.6 + Prom 21157 - 21216 4.6 22 12 Op 1 . + CDS 21247 - 22797 2012 ## COG0519 GMP synthase, PP-ATPase domain/subunit + Term 22909 - 22958 6.3 + Prom 22857 - 22916 2.2 23 12 Op 2 . + CDS 22974 - 23906 490 ## lhv_0259 hypothetical protein + Term 23957 - 24002 9.9 + Prom 23945 - 24004 4.3 24 13 Op 1 . + CDS 24093 - 26783 1719 ## COG1002 Type II restriction enzyme, methylase subunits 25 13 Op 2 . + CDS 26767 - 27519 401 ## gi|256844378|ref|ZP_05549864.1| predicted protein 26 13 Op 3 . + CDS 27532 - 29481 1743 ## LLKF_0604 DNA helicase 27 13 Op 4 . + CDS 29468 - 30691 1063 ## BSU06780 hypothetical protein + Term 30819 - 30851 -1.0 + Prom 31067 - 31126 6.0 28 14 Op 1 . + CDS 31263 - 31628 377 ## gi|256844381|ref|ZP_05549867.1| predicted protein 29 14 Op 2 . + CDS 31628 - 32185 319 ## gi|256844382|ref|ZP_05549868.1| predicted protein 30 14 Op 3 . + CDS 32187 - 33026 402 ## lhv_0264 FtsK family DNA segregation ATPase + Term 33066 - 33096 3.6 31 15 Tu 1 . + CDS 33117 - 33512 168 ## lhv_0265 putative replicative protein + Prom 33527 - 33586 3.0 32 16 Op 1 . + CDS 33607 - 33999 226 ## LC705_01954 hypothetical protein + Term 34009 - 34050 -0.8 33 16 Op 2 . + CDS 34070 - 34273 232 ## LAR_1503 hypothetical protein 34 16 Op 3 . + CDS 34270 - 35508 826 ## COG0582 Integrase + Term 35660 - 35699 4.7 + Prom 35654 - 35713 3.8 35 17 Op 1 . + CDS 35955 - 36146 192 ## LCRIS_00242 putative protein without homology + Prom 36149 - 36208 2.2 36 17 Op 2 . + CDS 36312 - 36866 156 ## COG2826 Transposase and inactivated derivatives, IS30 family + Term 36993 - 37040 7.7 + Prom 37047 - 37106 3.9 37 18 Tu 1 . + CDS 37154 - 38375 1208 ## FI9785_83 putative secreted protein Predicted protein(s) >gi|256541350|gb|ACPV01000124.1| GENE 1 12 - 764 1063 250 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00224 NR:ns ## KEGG: LCRIS_00224 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 250 1 250 250 274 99.0 2e-72 MKLSHKLVMVSAAVLMGVSPVLGMAENTVSVQAATKSTNGVHNTYGKNSKVKVTKTMKFV DRNGKKTSKTAPKGGSYTIWNVKNIDGQVYYSIQTDLKYWIPATATEGTVTYKSGNTTYT LKSDGKKVTTSTSTKKAVKKTNSNKNTKKVVKESTKKTATKTTKKSNSEKTTKKTSSKKT PVAKAVKITTKNKAYVYDKNGKRVKNYLGTSYIGKKITVKGLGTKTINGVKYYALQPNHY YIKASDVTVK >gi|256541350|gb|ACPV01000124.1| GENE 2 895 - 2436 2007 513 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00225 NR:ns ## KEGG: LCRIS_00225 # Name: not_defined # Def: cell separation protein # Organism: L.crispatus # Pathway: not_defined # 1 509 1 509 589 743 96.0 0 MKLSHKLVMVSAAALMSVAPLLDTAENVNTVQAAPKKTTSKKAANNKITLVRNAYVYDKN GKRLDKYMGSAKNTTIAKGVTVTSTGTKTINGVKYYDLGGGAYIKAVNVDGKAASSTSSL SKGTKAKFVSNSYIYDKNGKRISKYQGKSKFVKGDSVTTYGIQTINGKKYYQLDKKGTAF VRTVNIDGKTTSNQESSVSNDAESTKKYDYSLKKNAYIYDKNGKRINKYQGKSKLLKGAA IDVYGIETIKGKDYYQLDKKGTAFVKASNVTRTVKATSITMKKNAYIYNGNGDTKKKTVK KGKTVKATEARYIGTKLYYKISDNQFVKAANVGKISGPELEPVNEPDGAATVDTGDNTVD PNVTKVTTINVAPLYNIKGQPDNVRAFGAGQSQQVSELRYIATSATATPELFYKLSSGRG YLKKSDVAVSGKILTPVNTPEQARADVTVATAADKTKLLQDINEATSVKNSEAYKFASSD AKVAYDRAITNGTAVNNDAAATIAQVNEGCCYC >gi|256541350|gb|ACPV01000124.1| GENE 3 2366 - 2662 344 98 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00225 NR:ns ## KEGG: LCRIS_00225 # Name: not_defined # Def: cell separation protein # Organism: L.crispatus # Pathway: not_defined # 19 98 510 589 589 125 100.0 4e-28 MVLLLTTMLQLLLLKLTKDAAIVSAKAKLDGKRVAVANMTNLTSDEMAAIIKVVANANNV AESSVQLTTNGSLSISVNGAAQILNLGDYVTQAAVANN >gi|256541350|gb|ACPV01000124.1| GENE 4 2890 - 3864 1348 324 aa, chain + ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 6 315 9 317 317 410 65.0 1e-114 MSYKDDMMIFALNSNVPLAQKIADRVGVPLSKSSVERFSDGEIQINIDETVRGKDVYLVQ STSKPVNDNLMELLIMIDAVRRASARTINIVMPYYGYARQDRKTRAREPITAKLVADMLQ AAGADRILSLDLHAPQIQGFFDIPVDNLMGAPLLADYFLRNGLEKDAVVVSPDHGGVTRA RKLAEFLGCPIAIVDKRRPKANVAEVMNIIGNVKGKRAIIIDDMIDTAGTITLAAQALID AGATEVYASATHAVLSGPAIKRLNDSPIKNLVLTDSINQPAEKKLDKMLLVSVGPLMGDA IKCIQNHEALSPLFNTRYEADKNK >gi|256541350|gb|ACPV01000124.1| GENE 5 3967 - 5394 1417 475 aa, chain - ## HITS:1 COG:SP0303 KEGG:ns NR:ns ## COG: SP0303 COG2723 # Protein_GI_number: 15900236 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 4 472 2 474 478 650 66.0 0 MTESTFPKNFLWGGAVAAHQLEGGYNEGGKGISIADLMTLGGPNHPRELTATIEKDKYYP NHKAIDFYHHYKEDIKLMAEMGFKAFRTSIAWTRIFPNGDETQPNEEGLAFYDKVFDECL KYNIEPVVTLSHFEMPYHLVTEYGSWSNRKLIDFFTRFAHVCFERYHNKVKYWMTFNEIN NQANYESDISVYENSGIKFKEGDGKQKLMYQAAHYEMVASAEAVQIGHAINPDMQIGCML AFCPIYPASPKPEDILFAQRAMDSRLYFGDVQVNGEYPRWLTQYFKSKNYNLDITDKDLE ILKHGTVDYIAFSYYMSFAVKYTDHMDYREYSDLVENPFVKASDWGWPVDPVGLRYSLNW MTTRWHKSLFIVENGLGAYDKLTDDHKVHDDYRIEYLRSHIKEMKKAVTEDGVDLWGYLP WGCIDLVSASTGEMNKRYGFIYVDEDNHGNGSMKRYKKDSFDWYKKVIESNGTDL >gi|256541350|gb|ACPV01000124.1| GENE 6 5534 - 6256 493 240 aa, chain - ## HITS:1 COG:L19721 KEGG:ns NR:ns ## COG: L19721 COG1737 # Protein_GI_number: 15672397 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 1 236 2 240 243 172 39.0 6e-43 MAFFGFKDLSKLSTVDMTIYRYIEQNNDKVIYMRVRDIAQGAHVSSSSVMRFIHKIGFNS FPEFKAYLKNNHQSLHNVKVHYVTEDNFPSDTLSKLNIVADKIYQADNIITIGMGDSAFL AEYAARKMAALGLNTSPVTDPFYPLVFKLENTTNNVIICFSVSGNTTEMVEMINRFVNND DILLISITGDETSAIAKMSRYSLTYHEQMVRKEAYDFSSQVPVMYLVEGIVNILIEKEKQ >gi|256541350|gb|ACPV01000124.1| GENE 7 6452 - 7789 1598 445 aa, chain + ## HITS:1 COG:L31294 KEGG:ns NR:ns ## COG: L31294 COG1455 # Protein_GI_number: 15672800 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Lactococcus lactis # 1 443 1 469 472 364 46.0 1e-100 MKNFINNKILPPIMKFVNTKAIIALKDGMLLSLPFIMIGSLFLLLASFPIPAVANWMNQT GLTPFWNQAYNASFGIVAVFAVVGIAYQWAKNEGVEGLPAGMTAFVGFLILMNSTTPVMN GTKTVVSAQQAPTLLTGFIDRTWLGGQGMIAAIIVGLLTGWIYTWFVKRKITIKLPEQVP PAVANSFIALIPAAVLTALWLLVYIFFEKVAHTTLTQWIYATIQTPLQGITDSFGGILVL TLLVPFFWFFGVHGSTLVGGIAGPILSANALQNAAIFKKYGYVDAAHGGHIVIQGLFDQF STVTGAGMTIGLVVFMCFMARSAQMRSIGKLALVPGIFNINEPVLFGVPIVMNPMLALPF FIMPPLSAGSTYLLIKAGILPYLNGVQVPWTTPPVISGFLIGGWKVAIWQAIILIISFFV YLPFARSYDNVLYKQEQAAKAKEEK >gi|256541350|gb|ACPV01000124.1| GENE 8 7868 - 8779 287 303 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 2 299 3 319 319 115 27 5e-25 MKKYLSIDIGGTNLKYALIDEKGHILEKDRVKTDAKNLTAFMENMYEVIDSYQDQFEGIA ICAPGKIDTENKIIYFGGALKFLDGLNLQEALGDKYNVPISVENDGKAAALSEQWLGELR GVDTGVAITLGTGVGGGVVVNNHLLHGWTFQAGELSWMITNSGIGTKNKAAYTGDNCSAV NMVKKVNLALGNKDLDDGLTAFEAINNGDLRALAIFKRYCRNVAIMIINIQTVINASKFV IGGGISNQPILIEEINNQLAKILEVNPMIGKQMIPPKIVAAKHGNDSNLYGALYSLLLEL NKQ >gi|256541350|gb|ACPV01000124.1| GENE 9 8821 - 9084 333 87 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00228 NR:ns ## KEGG: LCRIS_00228 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 83 7 89 92 122 79.0 4e-27 MNNDVRTQINPEDEPKRAEKSGYTQVKDLMNTIHGYCMDYTNASFKFIHENKDLVKDIVD ISCKTAMVACVATASVSIAKFMSDVKK >gi|256541350|gb|ACPV01000124.1| GENE 10 9118 - 10482 1210 454 aa, chain - ## HITS:1 COG:SP1290 KEGG:ns NR:ns ## COG: SP1290 COG1078 # Protein_GI_number: 15901150 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Streptococcus pneumoniae TIGR4 # 12 442 3 426 434 476 54.0 1e-134 MTRFQSEKLKQEVVLRDPVHGYIHIEDKVVLDILKSKEFQRMRRIKQLGPVSYVFPGATH TRFEHNLGVYELTRRICDIFSKKYPSITPGDGLWNDDNRLLVECAGLLHDIGHGPYSHTF EHLFGTNHEKIGQKIITDPNTEINHALKQVAPNFPELVASVIAKTYPNPQVVKMISSQAD ADRMDYLQRDAYFTGVNYGRFDLSRILRVIRPYQNGICFTNNGMHAVEDYIVSRYQMYQQ VYFHRVGRSMEVILHHLLERAQAVYKKGNLQVTPSLTKFLEGNWTLDDYLKLDDGVMETN FSMWTQAQDPILSDLAKRYLYRKPLASVRIDEETKNLLPKLKSLIKQAGFNPDYYTATNS AFDEPYDAYKPTGKNANSQIEIMQDDSSMIELSQLSPLVRALNGTFQGDERFFFPKTMLS HDEDQPQIFDPLYEQFQKYIKNGALRYLRRPRKK >gi|256541350|gb|ACPV01000124.1| GENE 11 10576 - 11001 333 141 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00230 NR:ns ## KEGG: LCRIS_00230 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 8 141 1 134 134 253 99.0 2e-66 MFKEGACLTAITIDLTSKITQDDETETFTRHAQGQLTEEGDVTRISYAEEGQIPVKMLLK ENELLIRRGVDSNNYSLMKFIPGEKGNCRYVVEGRRMDMTSVTNLLEYQSQDDGSRKLRV EYDLFNGLYLIGNYAVTLIFT >gi|256541350|gb|ACPV01000124.1| GENE 12 11048 - 11551 716 167 aa, chain + ## HITS:1 COG:SPy1895 KEGG:ns NR:ns ## COG: SPy1895 COG3343 # Protein_GI_number: 15675708 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 134 1 134 191 106 54.0 2e-23 MGLDKFKDKNRDELSMIEVARAILEDNGKRMAFADIVNAVQKYLNKSDEEIRERLPQFYT NMNTDGEFISMGENVWALRSWFPYESVDEEVNHPEDEEDDSRKHHKKVNAFLASATGDDD IIDYDNDDPEDDDLDATDDDTDDVLPDGIEGQLSQLNDDDDDDEEDN >gi|256541350|gb|ACPV01000124.1| GENE 13 11668 - 13287 2201 539 aa, chain + ## HITS:1 COG:SP0494 KEGG:ns NR:ns ## COG: SP0494 COG0504 # Protein_GI_number: 15900408 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Streptococcus pneumoniae TIGR4 # 2 531 3 530 535 745 66.0 0 MTKYIFVTGGVVSSLGKGITASSLGRLLKNRGLKVTMQKFDPYINIDPGTMNPYQHGEVY VTDDGTEADLDLGHYERIVGVRTSKYSNVTTGKIYQEVLEKERRGDYHGATVQVIPHITD MIKKKIMRAALTTDSDVIISEIGGTVGDIESTPFMEAIRQMRREVGPENVMYIHCTLVPL LHAAHEMKTKPTQHSVAELRSIGIQPNMLVLRAEQPIDQEHKDKISTFTDVPVDRIIESI DAPSLFDVPLNFQKQGMDQKVCDFLHLESPKPEADMEAWKKLDERAKTLKHHTKITLVGK YVELEDAYISVTDALQHAGYLYNTKIDVDKVQAEDVTEDNIAEIMKDSDGLIVPGGFGTR GLEGMITAIKYAREHDIPFLGICLGMQMASVEFARDVLNLEDANSAEAEPNCKNNIIDIM ADKRDEENIGGTLRLGIYPATLKKGTKTRAAYDDQDVIQERHRHRFEFNNEYREAFEKAG MVFSGVSPDNRLVEIIELPKKKFFIAAQYHPEFLSRPQRPEGLFKSFIGAASGLPAQEF >gi|256541350|gb|ACPV01000124.1| GENE 14 13419 - 14717 1234 432 aa, chain + ## HITS:1 COG:lin2697 KEGG:ns NR:ns ## COG: lin2697 COG0766 # Protein_GI_number: 16801758 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Listeria innocua # 3 417 4 414 423 419 54.0 1e-117 MKQMIIHGGKPLQGDVWIGGAKNSTVALIPASILSRTPVTLEGVPRIADVVNLMDLLSEM DVHCDFGETTLRIDPTDIKMSPLPAGKIKSLRASYYFMGALLGRFGKAVVGFPGGDDIGP RPIDQHIKGFEALGASVKNENDQIIITAPEDGLHGAKIHLKMPSVGATMNIIMASVTAQG QTIIKNAAKEPEIIDLATFLNNMGAVIRSAGTDSIRIEGVEQLKAQIPHTIIPDRIEAGT YVALAACIGNGIRIHNIIEEHLDSYLAKVEEMGVVIDSDEDSLYVYPAGDLKMVQVKTDV YPGFATDLQQPITPLLLTAKSGEGVVIDNIYPKRIGHIAQLQKMGANIKVEDNIILAHPT KQFHGAEVTAGEIRAGACLMIAGLMADGTTTIDKAGNILRGYDRVQEKLRQLGADVTIKD DPAVPGILDNIW >gi|256541350|gb|ACPV01000124.1| GENE 15 14779 - 15297 552 172 aa, chain + ## HITS:1 COG:L36177 KEGG:ns NR:ns ## COG: L36177 COG0454 # Protein_GI_number: 15674159 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 3 172 1 167 169 155 43.0 3e-38 MSLIFTRRAQNSDVDKIVQILQDAITFLKKNGSTQWQSGYPNRETVEEDIEKQVAWVLTV DNEVAGYAAVVIGKDPNYAKIDGEWKNNVDTYATIHRIAVASQFRGMHLTQLFLSNIISL TYAQGIHNFRIDTGAKNKIVQHIALSHGFVQRGIIQVDDPINPDRLAYELNL >gi|256541350|gb|ACPV01000124.1| GENE 16 15297 - 15785 249 162 aa, chain + ## HITS:1 COG:BH1014 KEGG:ns NR:ns ## COG: BH1014 COG0563 # Protein_GI_number: 15613577 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Bacillus halodurans # 1 161 1 167 178 113 37.0 2e-25 MKRVLILGSPGAGKSTFARKLQSKTKLPLVYMDQLFWHANKTTVSKHELDEKVKRIVAKP AWIMDGNYQRTLKYRLPKCDTIFWLDYPTEVCLAGVKARKGKPRPDLPWIEEDEDPEFMS YIAKFRTVQRPILVKELQKYPNKQIIVFHSRQEANLFLHKIR >gi|256541350|gb|ACPV01000124.1| GENE 17 15840 - 17264 1683 474 aa, chain - ## HITS:1 COG:L48417 KEGG:ns NR:ns ## COG: L48417 COG4690 # Protein_GI_number: 15672234 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 6 474 3 459 459 514 55.0 1e-145 MKQTECTTILVGKKATIDGSTMIARSEDGGRVIIPEGFKAVNPADQPKHYTSVISKQKID DADLAETPLRYTSAPDVSGKNGIWGAAGINAENVAMTATETITTNSRIQGVDPLLDPSEG GLGEEDFVTLTLPYLHSAFDGVKRVGYLVEKYGTYEMNGMAFSDKDNIWYLETIGGHHWI ARRIPDDAYVIAPNRLNIDTFDFNDSDNFACSADLKDLIEEYHLNPDREGYNMRHIFGSS TIKDAHYNNPRAWYIHNYFDPDFGGTPADQDQPFICHANRLISIEDIKWAESSHYQDTPY DAYGDQGTPEQKKTFRPIGINRNFETHILQIRNDVPAEIAGVQWLAFGPNTFNSMVPFYT NVTTTPEAWQTTPKFNLSKIFWLNKLTAQLGDTNYRVYGELEDAFEQKSLAQCHKIQHDT DKEAKNLSGKELQDKLIAANQKMSDTVYNNTVELLGQMVDEGHGLMTLKYDLLD >gi|256541350|gb|ACPV01000124.1| GENE 18 17353 - 18165 851 270 aa, chain - ## HITS:1 COG:SP1899 KEGG:ns NR:ns ## COG: SP1899 COG2207 # Protein_GI_number: 15901726 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Streptococcus pneumoniae TIGR4 # 9 268 12 272 286 121 30.0 1e-27 MPNLNNQNLDSYIMFYGRQKCQPDEFFQGDNLRKNDIFYYIISGTGTFTSSRHHAVKLKA GDLFYVPRSQTCSFQADHNEPWEYFWIGLAGNGVNESIKASNLPNKNFLRQIQKTDFYQT LNNLYLYLNKKKTLLNNLQISALTYQLFYHLVKDFPNHPPVRKTPKNDQYQIAINYLKQN YTDPTCNIVELCHRLGVSRSFLYALFRKNTKLSPQKYLMQLRMEAAKKELTNTTHNLKQI AKKVGYGDEFTFSKAFKRYSGVSPNAFRGN >gi|256541350|gb|ACPV01000124.1| GENE 19 18317 - 19603 404 428 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 10 419 15 417 447 160 27 1e-38 MAQKEVSHKKAAVLGLQHLLAMYSGAVAVPLLIGTALHFNSTQMTYLVSIDIFMCGLATL IQLFRNKYFGIGLPVVLGCAIQAVAPLEMIGQKFSINTMYGAIIVAGIFVFLIAGWFSKI KKLFPPVVTGTLITVIGLTLIPVAFQNMGGGNAQAKDFGDAKNLIAAFITILIIVVIEVW AKGFLRSISVLIGLIAGTIIAGCMGLVSLTPVTQASWFHLPQFFYFGVPEFEWSSCLTMI IIALVSLVESTGVFFAIGDLLHQDITEEDLKKGYRAEGLAQIFGGLFNTFPYTTFSQNVG LLQLSGIKTKRPIYWAAGLLMAMGLLPKIGALVTIIPDSVLGGAMLVMFTMIAVQGIKML TKVDFENNRNILIVAISIGMGLGVTVYPQIFQTLPQTIQLFLGNGIVVASICATLLNLLF NGRSGANK >gi|256541350|gb|ACPV01000124.1| GENE 20 19610 - 20188 572 192 aa, chain - ## HITS:1 COG:lin1998 KEGG:ns NR:ns ## COG: lin1998 COG0503 # Protein_GI_number: 16801064 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 192 1 192 192 190 49.0 1e-48 MKELVDRIKQDGEVLPGNVLKINSFLNHQVDPQLMMHVGEEFARLFKDEKVDKVLTCEAS GIAPGVMAAYQLHVPMIFARKKKPSTLNDAVYWADVFSYTKKVNNKICVEEKFLHPGEHI LIIDDFVAHGEAVKGMVNIAKQAGCDIVGVGAVVAKTFQGGSEWVEKEGLRFEALAKIDS FENDQVHFEGEE >gi|256541350|gb|ACPV01000124.1| GENE 21 20422 - 21024 467 200 aa, chain - ## HITS:1 COG:SPy1834 KEGG:ns NR:ns ## COG: SPy1834 COG1396 # Protein_GI_number: 15675661 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 63 1 63 195 62 46.0 6e-10 MRLGQKIAALHKKNHLFQEALAEKMNVSRQAVSKWESEQSIPDIEKIVALSELFGVTTDY LLKSGSPSFELNHKDNNLTEELPILSDQQEQGYLTAAQKSASLRALAISLIIRSPAILCF STALAIMLDLGNLTIQLTGCRKIMNKYATLYWLIAVLLYLGYSFITNDWERSWIIWPIAG ILYGIIEKIISLCHNDIAAE >gi|256541350|gb|ACPV01000124.1| GENE 22 21247 - 22797 2012 516 aa, chain + ## HITS:1 COG:BH0607_2 KEGG:ns NR:ns ## COG: BH0607_2 COG0519 # Protein_GI_number: 15613170 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Bacillus halodurans # 202 516 1 315 315 490 73.0 1e-138 MAKNLDDFDKIIVLDFGSQYNQLITRRIRDFGIYSELLPHDLSMEKIKQINPKGIIFSGG PNSVYDNGALKVDPAIFKLDIPILGICYGMQLMSHDLGGKVEQAENKEYGRANITVEDPD SILFNGLPSKQYVWMSHGDLVTQAPKGFEVTASSKNCPIAAIANPDKKFYGIQFHAEVRN SEYGLDILKHFAFEVCGAEANWTMNDFIDMKVDDIRKEVGDKKVILGLSGGVDSSVTATL LHKAIGDQLTAIFVDHGMLRKDEGNQVMQALNKDLGVNIIRVNAQKRFLDKLKGVTDPEK KRKIIGKEFIEVFNEEAKKLKDVDFLAQGTLYTDVIESGTNTAQTIKSHHNVGGLPKDMH FKLIEPLRKLFKDEVRELGEKLGIPHDLVWRQPFPGPGLGIRVLGEVTENKLKIVRDSDA ILREEIKKAGLQEKIWQYFTVLPGIRSVGVMGDGRTYDYTIGIRAVTSIDGMTADFAQIP WDVLGHISDRIVNEVDNVNRVVYDVTSKPPSTIEWE >gi|256541350|gb|ACPV01000124.1| GENE 23 22974 - 23906 490 310 aa, chain + ## HITS:1 COG:no KEGG:lhv_0259 NR:ns ## KEGG: lhv_0259 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 65 306 156 397 402 277 54.0 3e-73 MNKDLMQMTVGAVEKELRKHGSQFLNYRRINHGVLKDVKGSVKVGKVSSVKGAFSELNAK GALNYRGVIGAFNKRASLNDIYGQINITVKQFRKLTQDILGDHDKNLQVARVLMRNGWVT SEFIYNDILKMNYNKSEKEILSYIKKFYSKNNYQKFFRIFDLIIDGFQEFGMNEGYRSQL IRIKEIIGQNLSNYDLFINDLFSIAEYVCAFQFGMLSNNDYINKNSIKANRRKYADKNGQ LTAIDLLSFFTVLKDWWEKANFKVGLDQTAFSRNTVEHGRFDPRRYQKIDFIKIVVFIFN AMMSPNLRDK >gi|256541350|gb|ACPV01000124.1| GENE 24 24093 - 26783 1719 896 aa, chain + ## HITS:1 COG:BS_yeeA KEGG:ns NR:ns ## COG: BS_yeeA COG1002 # Protein_GI_number: 16077744 # Func_class: V Defense mechanisms # Function: Type II restriction enzyme, methylase subunits # Organism: Bacillus subtilis # 3 891 2 879 879 910 52.0 0 MAGIIDLEDHISEIVENNDHTNFIYDFLGEYNIPKATMTKLRKGINNLSKEPGEVYLKNK LYFKQTDQDLMQAFTDVKAKVDELGTKPRYIFVTNFKEVLAYDTKTDDTLSIPFERLPQK FEFFLAWNGIEKADFDKENPADIRAAERFAKLYDVIVKDNPNATRKGLNLFLIRVLFCLF AEDTDIFEKNLFTNRLKELTKLDGSDVDEFIGKLFSVLDVKKEDRPADTPSWLADFPYVD GDLFKDPNESLKFTAKSRKLIINAGEKLEWDQINPDILGSMLQAVASEDSRSHLGMHYTS VPNIMKVIKPLFLDDLREEFEKDKGNYKKLQQLYDRIGHIKFMDPACGSGNFLIVTYKQL RQLEIDILKEQNRILSEEGSGKAMMYLPSVTLDQFYGIEIDDFACDTTRLSLWIAEHQMN IKLREEIHNAVRPTLPLQHAGAIVCGNALKLDWEKILPHKKDDEVYLFGNPPYLGARRQS KEQKEDLKEVVGVLKGYTSLDYISGWFFKGANYIKNSVARLSFVTTNSISQGEQVSILWE NLLNIITIFFAYKSFKWGNSAKNNANVFVSIIGLADKLLCSRSKKIYGPSFSIRVKNISP YLIVGNNKVVNKQNERLDNLPPINFGSMPNDGGNFIIDESEYNDLDINIKKFFKRYIGSS DFINGRKRYCLWLYKIGRNEYYNIEYIQKKIEAVKEYRLKSKRKATQKLADEPELFGEIR WKKANAIIVPRVSSKNRLYVPIGYVDENNVISDSALAIYKAPLWLLGLIESKLHMVWLEH IGGRLKLDYRYSASLVYNTFPVPDFSTRRKNEFEQLVLKILDIREEEGGTLAELYGSPLA EKNPKPMNSRLLKAHQELDEVVDRAYKPNGFKDDNERLALLLDMYSKKVRKNGSTN >gi|256541350|gb|ACPV01000124.1| GENE 25 26767 - 27519 401 250 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256844378|ref|ZP_05549864.1| ## NR: gi|256844378|ref|ZP_05549864.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 250 1 250 250 466 100.0 1e-130 MDQQIKTPKEFYQDLQGIFAPDSTGLEHLKSITKNLFSIIKKASQVNSDETAELIGAWVL GTKENRFLENKSAYDHYIIEHNELKNYIAQINSPNFSRDLLAKLFIDDFENSFELDRKIL VNLVCIDRLLNSKAYSLENLYFESAGSLINRLKQSDTDWDFLIDCLDKRIRNASSHLNFY YDNKSSSFKGKDVNARSKEILYFTISPEELLNTLLPQQCNVIQAFIACGILLWLSVNDEN VYNKAINLLN >gi|256541350|gb|ACPV01000124.1| GENE 26 27532 - 29481 1743 649 aa, chain + ## HITS:1 COG:no KEGG:LLKF_0604 NR:ns ## KEGG: LLKF_0604 # Name: not_defined # Def: DNA helicase # Organism: L.lactis_KF147 # Pathway: not_defined # 5 647 4 640 641 760 61.0 0 MQDKNVVEVNYHQTGKSTNTDELGMREMQARVYQHRNSQYLLVKAPPASGKSRALMFVAL DKLANQDVKKVIVAVPERSIGRSFKNTELVKYGFYEDWKVEPQYDLTLPGGDESKVQKLV DFLSSPEGKILICTHATLRFAYEKVADDHAFDNVMVAVDEFHHVSSNDSSVLGTALKNIM HNSSAHIMAMTGSYFRGDSEPILSPEDEQLFDKVTYTYYEQLDGCQYLKSFGIDYKFYQG SYLDALPDAIDTTKKTIIHIPSINSSESTKDKYNEVDAIFDAIGTLIDRDDKTGIYKIKS KQTGKLLKVADLVNEDEREKVQEYLRNISSADDLDIIVALNMAKEGFDWPWAEQALTIGY RHSLTEIVQIIGRVTRDSSNKTHAQFTNMIEQPDAKDDAVQYAVNQILKAITASLLMEQV LAPEIHLKRRNHKSDTPSGDADILIKGLKEPTTKRAQSIIENDLPDLKAAILQDNDVKNG IAANVDAEVMNKELIPKVIMTRYPDLNNDEVEQVSQYVVADTVLRHAKVDSSVDQEGNTN EFLKMADKFINVNDLDINLIESINPFPRAYDVMSQNIDSNTLRIIERSIDAKKYDFSNEE LMQLFMNAKAFVEKTGRRPDKNSNNEEEVRMAYALATLSDMRARRNENR >gi|256541350|gb|ACPV01000124.1| GENE 27 29468 - 30691 1063 407 aa, chain + ## HITS:1 COG:no KEGG:BSU06780 NR:ns ## KEGG: BSU06780 # Name: yeeC # Def: hypothetical protein # Organism: B.subtilis # Pathway: not_defined # 11 405 8 380 382 263 42.0 7e-69 MKIDNARPIRSLDDIFNDPAANELLAKPKKKRVTYDPEVEKFKEIENWVKEHNGKEPEKT TDLSRLGERKLASRLKGIREDLERIELLKPYDELGLLKTENQNVSLKEKVSQEKKTFNSL DDILNDDSALFDNSGQSLNSKLFDTGSLNAYKKSQENVAKNKSKRKAMDDFNKYRPLFKQ VQAELTSGKRHLIRYGNNKLKLHGFYVLKGQLMYIESIGAEFKNNNRSDTDTDARLHVIY DNGTENFPLRNGLIASLYGSKQRGGGGKIVTEPDDKFEFGEDDQVTGYIYVLKSLSNNAD VKRIQEDHPLYKVGFTSGTVERRIANAENESTYLYGPVKVVAEYQVINLNPEALETALHH ALVQYRLDVDIKAGNGRIIHPREWFVVDLNTITDIVNEIMSKLQMSK >gi|256541350|gb|ACPV01000124.1| GENE 28 31263 - 31628 377 121 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256844381|ref|ZP_05549867.1| ## NR: gi|256844381|ref|ZP_05549867.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 121 19 139 139 216 100.0 4e-55 MALKGLRDFVKFDAKGFLAGKQLLLMQESELKDFDSGKVIGAKLMVTIWTDDTQYKKDET SNEGSELDVKILGLTAEKVDRNNRGFIKLKNPSGVVFGDFQNQLSLKADGFDFVKERGGE N >gi|256541350|gb|ACPV01000124.1| GENE 29 31628 - 32185 319 185 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256844382|ref|ZP_05549868.1| ## NR: gi|256844382|ref|ZP_05549868.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 185 1 185 185 389 100.0 1e-107 MPTRTRKPQEGGTPEKVIPPLSWLFLACAIALFILAFQVPWFGQYCIFFGICSLVLALGC LGYWVYLHYDEIRFGGLLHSKNVDLSVIYSPKMKAFLYQSNTTAPDPYDPRYQQLPHVRK TRDGLRIEAIGKLRQWLISNQFRDSLEAFLNYNRCNISIQNAQYHSDGWVYFTIIRGIKN DRLRW >gi|256541350|gb|ACPV01000124.1| GENE 30 32187 - 33026 402 279 aa, chain + ## HITS:1 COG:no KEGG:lhv_0264 NR:ns ## KEGG: lhv_0264 # Name: not_defined # Def: FtsK family DNA segregation ATPase # Organism: L.helveticus # Pathway: not_defined # 3 259 5 260 270 243 47.0 8e-63 MSYLLTLSKSLSIDAYKKINFLVAGVRGSGKTYGTLILIAELASFPRISPCEFLGTAQLP TQIYCVDFKNSDLARLGDILPTGRVATNKEDAIKVVSDYDGKMHQRLTFIKKKAFGATAG TLGMPMYYLIIDEWSATNASFNQGITRADKDLRYKWNSLITDISMLNRVPGFGLGIISQQ ISVINSGLNSSIQEEAGLKLHFGDANMSSYRLTFGNDIQIPEIRLETGEAYAWIEGLTSS GYVIPFGMPEIEPDKLWDYLKQVLSNTQDDKKYLFFTSQ >gi|256541350|gb|ACPV01000124.1| GENE 31 33117 - 33512 168 131 aa, chain + ## HITS:1 COG:no KEGG:lhv_0265 NR:ns ## KEGG: lhv_0265 # Name: not_defined # Def: putative replicative protein # Organism: L.helveticus # Pathway: not_defined # 1 129 36 174 285 75 35.0 7e-13 MHQKIKKINKHAAVNVHLYGDVLEMTDYKPRKQRIKPLSKDNYVDLATGEVKDYHRNSQR IQSPENLRKTFKNLRRLIIGNFQAGDIWITLTYKQVNGKPMTDTSRVYKDFKAFWRRFIA KYGSCEYLSSP >gi|256541350|gb|ACPV01000124.1| GENE 32 33607 - 33999 226 130 aa, chain + ## HITS:1 COG:no KEGG:LC705_01954 NR:ns ## KEGG: LC705_01954 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 1 113 166 278 281 80 40.0 3e-14 MWRQGFTKTKRLKESDNVAAYLMAYLTDMPKNEIMPNVKSKSILKGARLHFYPSGVHIYR NSRGLIKPTNIKGFKGQVLRNFGLSENTIADATFNRKQKLKGGKRLIHITEFYDNISDKK KTNHARQDND >gi|256541350|gb|ACPV01000124.1| GENE 33 34070 - 34273 232 67 aa, chain + ## HITS:1 COG:no KEGG:LAR_1503 NR:ns ## KEGG: LAR_1503 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 3 66 2 65 71 70 54.0 2e-11 MKKEFVNYKDLRQLGFGDNQARRIIRLAKKKLVEKGFAFYNGKRVGLVPAKAVAEVIGVP FKEDDNF >gi|256541350|gb|ACPV01000124.1| GENE 34 34270 - 35508 826 412 aa, chain + ## HITS:1 COG:BS_ydcL KEGG:ns NR:ns ## COG: BS_ydcL COG0582 # Protein_GI_number: 16077547 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Bacillus subtilis # 79 372 70 365 368 102 27.0 1e-21 MKTRYPNVYQDKNGKYFYQIFVGTDANGKKKLKKGRRDALKHPFSSAYQAYKEAQRVQAL YANVSADNISYASFMKDRYLPKYRGDVEASTYDTHNLMMLKGVDFLGEIKLKDIKVIDCE KYRTWLLTDSGFSRNYASVIYTAFRQSLDYAVEIGLIASNPSLKTKSIPKGRNIENYWTM PEFEKVLASINTDTFYEELIYVTFLFYYRIGCRVNEGFALRWSDIDLINGKVRFINNLHY SSKLNYELVPYLKNDASRRTVTIDAELLEVLKKWKKEQAKYNIHDFVFSCDNCPLNKSTL SVWLKRYSKLAGVSRINGRGLRHSNASYLIAELGADVLTVSHRLGHKTPMTTLKYYAHMF SNNDIELASKMEGSMNIKPAQHSKVQFNGNQHIKGNSITGMPKVCQNKKKTA >gi|256541350|gb|ACPV01000124.1| GENE 35 35955 - 36146 192 63 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00242 NR:ns ## KEGG: LCRIS_00242 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 63 1 63 63 91 100.0 7e-18 MKPLKDELIQSRLDEDELADFDKVKKLLDVKSNSVAIRQMIKDEMRKPEMNGSKVILTLY QRY >gi|256541350|gb|ACPV01000124.1| GENE 36 36312 - 36866 156 184 aa, chain + ## HITS:1 COG:BH2524 KEGG:ns NR:ns ## COG: BH2524 COG2826 # Protein_GI_number: 15615087 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Bacillus halodurans # 5 173 100 270 314 124 42.0 7e-29 MAHVVRIAYKTIYNWIEQGVLDIGVADLPDHGIRRRRAKETRGTFSHGRSIEDRPAEVID RHTSGHFEADTVLSGKRKGQAIATFVERKSRLIIVKRLQGRDSTSITKAILELANQLEDN LKPLTVDHGKEFANYKLIEKQARIPLYFAHAYSPHEWGSNENRNRVLRRFIPKVNRLRKS LMMS >gi|256541350|gb|ACPV01000124.1| GENE 37 37154 - 38375 1208 407 aa, chain + ## HITS:1 COG:no KEGG:FI9785_83 NR:ns ## KEGG: FI9785_83 # Name: not_defined # Def: putative secreted protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 407 2 442 1423 451 67.0 1e-125 MKQLKFLETKRTPRYSLRKFSVGVASVLLGVTIFGINFTNHSVKAATIESVKTSNSSPET QGSASNNATANNSTEAATTPQSSPETQGSASNNATANNSTEAATTSQSLPKTQGSAHTYI RSLAARSAARLAATNFMVTSGSDRNAAGTVDQNNINTQLAKENQELANKANLTSSDNYSS NIYKGTDGNYYKIVTIYGQDYVYRAADIQASGADFKGDPKQTAEDTKNNINISKEDLGNG KTRWKVVFFPNKGLQNVGSKLSGLSSAKFGIALTSDYQIVGNVDMKVISNPNQTFESYTF EPGSTSATEFPIQNLKTEKDFSFNPKTDVDPNTGLINSETMPAYNNQYLQGPYYFTTATD VGAKNLWQTYFKDADERKNAYDGSPYLGGNHDFHFNTFKIANETGVD Prediction of potential genes in microbial genomes Time: Wed May 25 05:53:27 2011 Seq name: gi|256541349|gb|ACPV01000125.1| Lactobacillus crispatus 125-2-CHN cont1.125, whole genome shotgun sequence Length of sequence - 6190 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 3520 4491 ## FI9785_83 putative secreted protein + Term 3592 - 3637 5.5 2 2 Tu 1 . - CDS 4166 - 5077 699 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase - Term 5380 - 5441 9.2 3 3 Tu 1 . - CDS 5478 - 5993 342 ## LCRIS_00255 hypothetical protein - Prom 6072 - 6131 6.5 Predicted protein(s) >gi|256541349|gb|ACPV01000125.1| GENE 1 2 - 3520 4491 1172 aa, chain + ## HITS:1 COG:no KEGG:FI9785_83 NR:ns ## KEGG: FI9785_83 # Name: not_defined # Def: putative secreted protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 504 1172 766 1423 1423 438 51.0 1e-121 GAKYKDPIIYDKLGYRLNSKNGVANSNGVYSSDNFNQAMSFKSQGVTSNAQFSSYVISFT TQHTDSHEVELTTGSKNQQFSGIAANIYSYQNWYYSMMSSLYGEQRALDPAGAPKTPKDV ISGWVDATRALDEIKKDYLNNAQINVLRNKILNNITDSDAVNNIIKEGNSLNDAMKNLGN SIGQYDPDGSFADHKEDTTKKSDRYKYASPDKKAAYDNATEVTKALINKDTGTYADQATV EQLTKDENDAWNELNGVKPKDNEVNSPVGGTITIEKGHALDSTDAANAITNKDSLTNVKS YSWSGTPDTSKPGSISPKVIVTYNDDSADEVPVTVKIKGDADKYNPEGGEITVNRNTKLG PTEAEEAIKNAQSLPNGTTYSWAGKKLPDTSTSGSKDGWVVVTYPDTSHDIVPVKINVKK DAESYTVTPNNEVSVDKGEDVDPASLVTVTDPDGKQVQLPAGSIDWKDGAKPDLTTPGDK TGSVEVTFLDGSKKDTDVTIHVKTDAETYDPQAQPWTTTVGKTPKADEVISSTDKNGKKM PSDAKYTWKTEPDTSKTGEASGVVKVTYSDESQDEVPVTINVKDKLDDKEKYHIYGKDGL KVDKNGTLAPQDAIDVKDADGNKTTLPENSIVEWTKKPDFSQAGKDVTGEVTVTYPDPDH SKSDPVTVTVHVNGKSDEYKVAPRDGVTVPRGSQVDPERTVVAQTPDGQPASFPDGTTHK WVTPPDTSTTGNRTGVVETTFPDGSTTRTTVTVKVQPNQSDKYDPHGPENPDDRVPVKNP DHLTGGDKDNVKGEVGKVNPDLPKDTEVTVDDKGNATIIYSDGSKDKIPGGDLVRPEKDA DKNDPKGPKNPDDRVPVKDPDHLTDGDKDKVKDEIGKENPDLPGTIDVDDKGNATITYPD GSKDTIPGGDLVRQEDKDKYDPKGPKSPDDRVPVKDPDHLTDGDKDKVKGEVGTVNPDLP KGTEVTVGDDGTATIKYPDGSQDTIPGDQLVQGQKGDTTDAGNITPTIPGGKVTVKDPSH LTDDEKNQVKNNVDNANKDKFPAGTVITVGDDGTTTVTYPDGSKDVIAGTDLVIAAKSED VPGSKHHSHKNGSNSSQADGVKGASTANGSIANAGNNLGVKGESDNAIGNNKATSLKTLP QTGTKDTSILGVLGMLLASLGLFVFKKKRDKE >gi|256541349|gb|ACPV01000125.1| GENE 2 4166 - 5077 699 303 aa, chain - ## HITS:1 COG:lin2784 KEGG:ns NR:ns ## COG: lin2784 COG1575 # Protein_GI_number: 16801845 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Listeria innocua # 6 303 2 315 319 143 31.0 4e-34 MKKYSTLQKFNALVQIQTIIISALPYIIGSVMASYYYHNFNLVYSLWLFLAVICFHLAVN GHNQYTDYARYKQNHITSYNNILEKFNITKSWARKIIIILTLISAIIGTILSIKVGWIIL LIGILSYLIGYCYSGGPYPILKTPFGEPASGITMGYNITFLGLYINMYNVHPFDNFFWAK AIIVAGPAIFVIANVMLANNICDVAEDVKIGRKTLPYYTGRKTALTILCCYYVLAYIFLI LVIVLKYLPVITLGSLLTIPLVYHTTKTFVKNPHKESTFTGILVNVLLVLISEIIFSLVG LAI >gi|256541349|gb|ACPV01000125.1| GENE 3 5478 - 5993 342 171 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00255 NR:ns ## KEGG: LCRIS_00255 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 171 1 171 171 282 100.0 3e-75 MKSANYTRKHHMYLMNHKNGDVIEVRMDKKNKTFKKIRLYRQDGLGNYYLDPHAEFKDQK SPATKENIVEAGKKVSDHISSAENWHHKVRPIFNAEHKIVDFEPRLHLEHHTKIQNAKRY LRHLERRHADFIFRKNSKTPLLIPWNYIKDMIYEDRNKEMVLAHKVHKLRK Prediction of potential genes in microbial genomes Time: Wed May 25 05:53:54 2011 Seq name: gi|256541348|gb|ACPV01000126.1| Lactobacillus crispatus 125-2-CHN cont1.126, whole genome shotgun sequence Length of sequence - 29065 bp Number of predicted genes - 26, with homology - 26 Number of transcription units - 10, operones - 7 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 1152 854 ## LCRIS_00260 chloride channel protein 2 1 Op 2 . + CDS 1165 - 2166 1304 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases + Term 2324 - 2366 6.7 + Prom 2215 - 2274 6.3 3 2 Op 1 . + CDS 2480 - 2824 230 ## LCRIS_00262 hypothetical protein 4 2 Op 2 . + CDS 2805 - 3080 308 ## LCRIS_00263 hypothetical protein 5 2 Op 3 . + CDS 3139 - 4374 1562 ## COG0112 Glycine/serine hydroxymethyltransferase + Term 4393 - 4434 5.1 + Prom 4380 - 4439 8.6 6 3 Tu 1 . + CDS 4524 - 6071 1328 ## COG0531 Amino acid transporters + Term 6072 - 6129 7.2 7 4 Tu 1 . - CDS 6117 - 6944 804 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 6971 - 7030 8.3 + Prom 6968 - 7027 7.9 8 5 Op 1 . + CDS 7060 - 8679 1720 ## COG0366 Glycosidases + Prom 8683 - 8742 4.3 9 5 Op 2 . + CDS 8789 - 9034 422 ## PROTEIN SUPPORTED gi|227878359|ref|ZP_03996314.1| ribosomal protein L31 + Term 9050 - 9086 6.4 + Prom 9067 - 9126 7.2 10 6 Op 1 2/0.000 + CDS 9160 - 10527 1591 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase 11 6 Op 2 . + CDS 10540 - 12024 1594 ## COG0513 Superfamily II DNA and RNA helicases + Term 12035 - 12086 9.7 + Prom 12028 - 12087 5.8 12 7 Op 1 5/0.000 + CDS 12107 - 12463 410 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) 13 7 Op 2 . + CDS 12468 - 13598 1247 ## COG0787 Alanine racemase + Term 13616 - 13656 5.1 - Term 13602 - 13642 5.1 14 8 Op 1 . - CDS 13663 - 14370 751 ## COG0517 FOG: CBS domain - Prom 14399 - 14458 11.3 - Term 14485 - 14518 1.4 15 8 Op 2 . - CDS 14542 - 15513 1406 ## COG0039 Malate/lactate dehydrogenases - Prom 15552 - 15611 10.3 + Prom 15486 - 15545 10.2 16 9 Op 1 7/0.000 + CDS 15650 - 16207 725 ## COG0193 Peptidyl-tRNA hydrolase 17 9 Op 2 3/0.000 + CDS 16209 - 19703 2958 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 18 9 Op 3 . + CDS 19719 - 19961 325 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 19 9 Op 4 . + CDS 20029 - 20406 516 ## LCRIS_00279 septum formation initiator 20 9 Op 5 2/0.000 + CDS 20406 - 20768 549 ## PROTEIN SUPPORTED gi|58336615|ref|YP_193200.1| putative ribosomal protein S1 + Term 20773 - 20800 -0.8 21 9 Op 6 14/0.000 + CDS 20807 - 22060 820 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control + Prom 22068 - 22127 4.3 22 9 Op 7 1/0.000 + CDS 22155 - 24323 1234 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 + Term 24331 - 24363 4.0 23 9 Op 8 2/0.000 + CDS 24376 - 25266 1143 ## COG1281 Disulfide bond chaperones of the HSP33 family 24 9 Op 9 3/0.000 + CDS 25344 - 26369 480 ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase 25 9 Op 10 . + CDS 26386 - 27936 2021 ## COG1190 Lysyl-tRNA synthetase (class II) + Term 27947 - 28007 11.1 - Term 27942 - 27984 2.6 26 10 Tu 1 . - CDS 28003 - 28458 432 ## lhv_1122 hypothetical protein - Prom 28685 - 28744 75.6 + TRNA 28671 - 28745 87.5 # Gly GCC 0 0 + TRNA 28857 - 28931 87.5 # Gly GCC 0 0 + TRNA 28968 - 29041 76.0 # Pro CGG 0 0 Predicted protein(s) >gi|256541348|gb|ACPV01000126.1| GENE 1 1 - 1152 854 383 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00260 NR:ns ## KEGG: LCRIS_00260 # Name: not_defined # Def: chloride channel protein # Organism: L.crispatus # Pathway: not_defined # 111 383 6 278 278 460 100.0 1e-128 IGICCATYLNLINFIINFVWHVLFDKLPVPSQVLPFFICIPFGFIIGILIKRLGSYPLTI EEVLMSVKQEGKINYHNWWKSLTLGLISLAAGGSIGPEASTTVLGSGMVNWLGDRLRLIA YSSDWKWNHFWDTIVSKKQLKKLPKFSSLFKSKLHQKVFCLIMVMIGVVGAAIVFKLFPE EGLFGIHHRHILWQWHYSMYVIIPLIVGWSFGMFFLWSEKWSDYFAEKITISPIIKATIW GIVLALLTLITSYALYSGEFQIVPFVHQALQISPLFLLVIAVIKTLSTNIGFSLGWRGGK IFPSIFASVAVGAAIAQFLPIMPVMCVAITVSASIAVILGKPLLTAILLILLLPIELAPV ILVSAYLAACLTKVSYSFRQKNN >gi|256541348|gb|ACPV01000126.1| GENE 2 1165 - 2166 1304 333 aa, chain + ## HITS:1 COG:AF0807 KEGG:ns NR:ns ## COG: AF0807 COG1304 # Protein_GI_number: 11498413 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Archaeoglobus fulgidus # 46 323 93 357 366 122 33.0 1e-27 MNEKNDAVTGASLIENQEEKVKSPWPGPKGMIPVTSGRADDANVHNRAYLDNILVEMRLL DSVEPDLTTEIFGKKYASPLTLAAVSHLNKVLPDKTRKPMQEKARAAKNTNTLNWIGMES NEEYAEIVKESGDTVRIMKPYADHDKIMGELKQAEELGAVAVGMDIDHVPGDNGKYDVVD GIPLGPISFSDLEKYVHAVKLPFVAKGVLSVRDAVKARDAGAKAIVVSHHHGRVPFGVPP LKVLPAIKQALNGSRMTIFVDGSLMTGYDAYKALALGADAVLIGRGILSELLKDGQKATE DKIKKMNEQLAQMMLYTGVRDTKSFDPSVLHFD >gi|256541348|gb|ACPV01000126.1| GENE 3 2480 - 2824 230 114 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00262 NR:ns ## KEGG: LCRIS_00262 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 4 114 1 111 111 182 95.0 3e-45 MMLLKFHYERGCKTFFKKHKNEQKIIKQLIDQAITKELATGMTKVKIAAMTRIEEKSIYE FRLNLKKEGSARVAFAVKDEQVLVLLITSNLQKDSFSHELETVLKGSHYAFNSN >gi|256541348|gb|ACPV01000126.1| GENE 4 2805 - 3080 308 91 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00263 NR:ns ## KEGG: LCRIS_00263 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 91 1 91 91 160 100.0 1e-38 MRLIPIKQAETLLKKMCSNKSKYVEIKLLTAKKDRSISVKNDGKKLILTEDGYLNFTQEY ELTDPAVGRHAVLAAFKKEFPRSNRAYLIAK >gi|256541348|gb|ACPV01000126.1| GENE 5 3139 - 4374 1562 411 aa, chain + ## HITS:1 COG:L0082 KEGG:ns NR:ns ## COG: L0082 COG0112 # Protein_GI_number: 15672583 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Lactococcus lactis # 8 410 13 415 415 531 66.0 1e-151 MKYAEKSPALWDAIYHEEQRQQDTIELIASENIVSDAVREAQGSVLTNKYAEGYPGRRYY GGCQYIDQVEQLAIDYAKKLFNAKFANVQPHSGSQANMAVYQALLKPGDVILGMGMDAGG HLTHGSKVNFSGKEYKSYSYGLNVETEELDFDAIREIALKVKPKLIVAGASAYSRIIDWQ KFREIADEVGAYLMVDMAHIAGLVATGQHPSPVPVADVVTTTTHKTLRGPRGGMILSNNL EIGKKINSALFPGIQGGPLEHVIAGKAQAFYEDLQPQFTDYIKQVIKNAKAMAETFAESD NIRVVSGGTDNHLMIIDITKTGITGKDAQNLLDFVHITTNKESIPGDQRSPFVTSGLRIG TPAITSRGFDEVDAKKTAEMIIEILSDPENSATIAHVKEEVQALTKKHPIE >gi|256541348|gb|ACPV01000126.1| GENE 6 4524 - 6071 1328 515 aa, chain + ## HITS:1 COG:SA2239 KEGG:ns NR:ns ## COG: SA2239 COG0531 # Protein_GI_number: 15928029 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 503 19 521 545 540 57.0 1e-153 MLALNSLIGSGWLFGSGSAAQIAGPAAILSWILGAVIIISIALTYVELGSMFPESGGMSR YAQYSHGPLLGFVAAWANWISLVTLVPMEAVAAVQYMSSWPWSWANWTKNFIKNGSITFA GLGVVIIFMLIFTMINFWSVKIMTHFTNLISIFKILLPTLTITVLIASGFHGQNFGSNLH EFMPYGSRSIFEATSVSGIIMSYDAFQTVINMGGELKNPRKNIVRGVLISMLITAAIYIM LQVTFIGAVEPGMLAKVGWHGVNFTSPFADIAIILGINWLVILLYLDAFVSPFGTGVAFV ATASRALAAMTHTRHLPKWLGRLNQKYLIPRYAMIADFVLAVILVSLFRNWNLLATVITA STLIAYLTGPVTVMTLRKKRPDLDRPFNPGYMKWLAPVTFILTSLAIYWSMWPTTIQVII VIALGLPIYFYYEIHYQHSNLKEQLHSSWWMIGYLIFMSLMSFVGSSGFGGQNWIKYPFD FVVIIIISLAFYYWGIKTGLKKIDPYAEKIAQNKE >gi|256541348|gb|ACPV01000126.1| GENE 7 6117 - 6944 804 275 aa, chain - ## HITS:1 COG:lin0440 KEGG:ns NR:ns ## COG: lin0440 COG0561 # Protein_GI_number: 16799517 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 7 275 3 268 270 143 30.0 3e-34 MTTLPFKAVAVDVDGTFVNDEKQYDHQMFSEILTRLHQHGAHFIIASGRPAGRLADDFSE FIDSIDFVADNGAVLVRDGKIIRTTSFSKKCILNFIEYLHARYPGAAQNILISGVKHSYF LKSTPPEYKRSHHYFYPNSIEIDDFNKIPADDQYTKITMDYPSKIRHELEHGFNSRSTEK IHVTTSGWSYMDIIPEGVNKAAGLKEFLAYLDVPRSELIAFGDGENDLEMLKFAGLSYAM ANGQDIVKKTAKFIAPTNNDNGVFKVLNKYLDEAE >gi|256541348|gb|ACPV01000126.1| GENE 8 7060 - 8679 1720 539 aa, chain + ## HITS:1 COG:SP0342 KEGG:ns NR:ns ## COG: SP0342 COG0366 # Protein_GI_number: 15900272 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 4 538 5 534 535 666 60.0 0 MTPWWKKAVVYQIYPKSFQDSNGDSIGDLQGIIARLDYLENLGVDAIWLSPVYQSPGVDN GYDISNYEAIDPQYGTMADMDELIQKAKEHHIRIVMDLVVNHTSDQHQWFVEARKSKDNP YRDYYIWRDPVDGHEPNSLKSAFSGSAWKFDEQTGQYYLHFFAEQQPDLNWKNPELRQKI YDMMNFWLDKGIGGFRMDVIELIGKDPDKMIRENGPMLHPYLQEMNKNTFGDRDVMTVGE TWNATPKIAEEYSDPARHELSMVFQFENQALDQQEGKEKWDLKPLDLGELKKVLVKWQTE LDFNHAWNSLFWENHDIPRVISRWGNDKKYRVQCAKMFATVLHLMHGTPYIFNGEEIGMT NCPVKNIDEVEDIESVNMYHERLAEGYDKDKLIHAINVKGRDNARRPMQWNDEKNAGFTK SKPWLTVNPNYKEINVKKALADPNSIFYTYQELITLRHENEIVVNGDFKLVHDTGDEVLA YYRILGTEKWLVVANLSGEEQQFTSTDRIKENLLSNYAVRNDLHDITLKPYEAFAVAIK >gi|256541348|gb|ACPV01000126.1| GENE 9 8789 - 9034 422 81 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227878359|ref|ZP_03996314.1| ribosomal protein L31 [Lactobacillus crispatus JV-V01] # 1 81 1 81 81 167 100 9e-41 MKQGIHPEFQEVVFMDSATGAKFLAGSTLKPSETIDYEGETYPLVRVEVSSDSHPFYTGK QKFAQADGRIEKFNKKYGLKK >gi|256541348|gb|ACPV01000126.1| GENE 10 9160 - 10527 1591 455 aa, chain + ## HITS:1 COG:SPy1420 KEGG:ns NR:ns ## COG: SPy1420 COG0770 # Protein_GI_number: 15675337 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 1 454 1 452 463 355 43.0 1e-97 MKMQMAEIAKALNTTCEGDNQTVITSVAFDSRKITDGGLFVPLEGERDGHEFIASAINNG ASATLWKKGHPNKPEDIAVIEVDDPLAAMQELARYYLRKVNPTVVGITGSNGKTTTKDMI AAVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDV AVITMIGEAHIEFFGSRDKIADAKMEITDFLREDGEFIFNGDEPLLQERAEKLDQAKATF GFRDEDTVHATGFKSYMHHATFTVNDSEQKFSIPMIGKHNVSNAMAAISVGRHFGESDEE IASSLSNFTPTANRMEWEKGDAGESIMSDIYNSNPTAVRAVLTSFGQVEVKDNGRRIAVL GDMLELGKNSPELHAGLEDTLDPQIINEVYLYGSEMKNLYDALQDKYEPEHLHYYTQEQT DRMIDDLKNDIKSDDIVVLKGSHGMHLENVLARLR >gi|256541348|gb|ACPV01000126.1| GENE 11 10540 - 12024 1594 494 aa, chain + ## HITS:1 COG:lin0859 KEGG:ns NR:ns ## COG: lin0859 COG0513 # Protein_GI_number: 16799933 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 2 467 3 475 516 551 61.0 1e-156 MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL QMIDKKEKAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLKHHV PSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQTLL FSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRLIDVQGP DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDILVATDVA ARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRTIEQLTK KKMSPLRPPTDDQALHGQLKQAKIEIEDLMNGDLGKYTQGASELLDNYSALDLVAAFLKN LAKDEVKVKITPEKPLPYKGDGRRRRGKGHGRSNNNHGRDNHRRRNNNSYRQNGNRGKRG RGNGHEFVIKNKKD >gi|256541348|gb|ACPV01000126.1| GENE 12 12107 - 12463 410 118 aa, chain + ## HITS:1 COG:SP1699 KEGG:ns NR:ns ## COG: SP1699 COG0736 # Protein_GI_number: 15901533 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Streptococcus pneumoniae TIGR4 # 1 117 1 116 120 101 43.0 4e-22 MIKGVGIDSIEVERVKKIVDKGDAFAKKVLTPKEFDQYQKMAGKRKVEYLGGRFSLKESF SKAMRTGLGKYIGFQDVETLWDDLGHPVMTSTKFDGNIFPSITHDNHEIITFVVLEEK >gi|256541348|gb|ACPV01000126.1| GENE 13 12468 - 13598 1247 376 aa, chain + ## HITS:1 COG:L0103 KEGG:ns NR:ns ## COG: L0103 COG0787 # Protein_GI_number: 15672826 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Lactococcus lactis # 6 373 6 366 367 346 49.0 4e-95 MVPGYHRPAVVKVNLGAIRRNIKNEMKHLATGQKMLAVVKANAYGHGAVEVAKIAIEEGA AGLCVAILDEALQLRHADIVKPILVLGVVSPEYAPIAAANNVSLTIPNLEWLKEAEKYLE KEQLQLKVHIGVDSGMGRIGFNEDEDFIAANKFLQNNDNFYVEGMFAHFASADSADDTYF KHQVEKFAHMRSLLTVKPKWIHVDNTAASIFNKDVPSDCVRFGIGIYGLNPSSNPDSPDL KSSISLEPALSFESELTHVKTIHEGDGVGYGSTFVADQDTIIGTVPVGYADGFIRKFQGF KVKVGDEYCPIVGRICMDQFMVKMPKKMPLGTKVVIISNDPTAPNNIKAAADYVDTIHYE VACLLNDRLPRVYYEK >gi|256541348|gb|ACPV01000126.1| GENE 14 13663 - 14370 751 235 aa, chain - ## HITS:1 COG:lin0562 KEGG:ns NR:ns ## COG: lin0562 COG0517 # Protein_GI_number: 16799637 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 214 1 210 211 219 50.0 3e-57 MLIKSLVIKKDYLTTVNEKATLAEALKVLEDSGYRCVPIVDDTGTIFRGNIYKMHIYRHK SQGGDMNLPVTYLLKNATKTIKVNSPFFKVFFNIKDLPYIAVLDEDNHFYGILTHSRMLD MLSDAWDVKNGSYVLTVLSDNTRGNLIKMSKIVSKHTNMSSVMTLDAAAGELEGNFVRRT LFTLPAGVSDITMRTIVDKLQRKGFVVSEIEDLQAGMTIMSDENPGVFIEHPVKD >gi|256541348|gb|ACPV01000126.1| GENE 15 14542 - 15513 1406 323 aa, chain - ## HITS:1 COG:lin0242 KEGG:ns NR:ns ## COG: lin0242 COG0039 # Protein_GI_number: 16799319 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 8 316 5 311 313 378 59.0 1e-105 MPRDERPRKVILVGDGAVGSTFAFSMVQQGIAEELGIIDIAKEHVEGDAIDLADATPWTS PKNIYAADYPDCKDADLVVITAGAPQKPGETRLDLVNKNLKILSSIVEPVVESGFEGIFL VVANPVDILTHATWKMSGFPKDRVIGSGTSLDTGRLQKVIGEMEHVDPRSVNAYMLGEHG DTEFPAWSYNNVGGVKVSDWVKAHGMDESKLEDIHKEVANMAYEIINKKGATFYGIGTAS AMIAKAILNDEHRVLPLSVPMDGQYGLHDIHIGTPAVVGRKGLEQIIEMPLSDKEQELMT ASADQLKKVMDKAFKETGVKVRQ >gi|256541348|gb|ACPV01000126.1| GENE 16 15650 - 16207 725 185 aa, chain + ## HITS:1 COG:lin0245 KEGG:ns NR:ns ## COG: lin0245 COG0193 # Protein_GI_number: 16799322 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Listeria innocua # 1 185 1 184 184 160 42.0 1e-39 MKIIAGLGNPGQKYDKTKHNTGFMTMDHYLNEKGLSLDKDKFEGHWTKQKINGEDVILLE PQTFMNESGRSVSQVANFFKVDPADVLIIQDDMDMPIGKIRIRANGKSGGHNGIKSIIRD LGTEKFNRLKIGIRHPKNATVVSWVLTPFNDEQQKLMDDAFAISVDIIDDFISGHGSQYL MNKYN >gi|256541348|gb|ACPV01000126.1| GENE 17 16209 - 19703 2958 1164 aa, chain + ## HITS:1 COG:BS_mfd KEGG:ns NR:ns ## COG: BS_mfd COG1197 # Protein_GI_number: 16077123 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Bacillus subtilis # 23 1113 25 1123 1177 1034 48.0 0 MRLTEILDKDQDLNNFISKTKQVKNSLITGANAGAFSLLLKQITTKLAAPLILIEENESK AQNLYGELSAIMADETVQIFPVDATIATQTAVSSPDELSSRIQALNFLLSGKAGIVVTTP QGLQYKLTNPTDFAQAKRSFEPGQEYELKELNEWLLASGYQRDSLVARPGEFAIRGDILD VYPLDRENPVRIEFFGDEIDTIKEFDLASQRSQKELDKVEVAAAQDRVFTKAAIAAAAKK IEQDMANAPAPAKAVKDHFAAFLDELNDGGLPKNYAFLIDYLLEISSSLLEYLPKNGQIL FDDLPLINQAVETVDKQNAAFINDELKTGAMLPGQSLRSDYTKILSKDKHHRIYFSLFQR SMGRLRLGQMLNWSTREPEQFFSQMPLIKSELESYQKAGQTVILQADNEKRAQQIDQTMV DFGLNLPIVGADEIVEQRTQIVVDGFVSGFSLPTVKLVYLTERELFNKRPQRKKRIKTLE NAQRLRNYTELKPGDYVVHVNHGIGRFEGIKTLENNGTKRDYITITYQHGDQLFVPADQL SLVQKYVGSEGKTPHINKLGGSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGFAFSPD DDLQKQFEDAFPYPETPDQLRSVKEIKQDMESSKPMDRLLVGDVGFGKTEVALRAAFKAI QDNKQVAFLVPTTILAQQHYETIQDRFKDFPVNTTMLSRFQTPVESKEIIEGLKNGKIDL VVGTHRILSQDVKFKNLGLLIVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMS MVGVRDLSVMETPPQNRYPIQTYVMEQIPSVVRDACLREMQRDGQVFYLHNRISDIDETV EKLQELMPQARIAAAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIE DADHYGLSQLYQLRGRIGRSARLAYAYFLYKPNKVLTEVGEKRLDAIRDFTELGSGFKIA MRDLSIRGAGNMLGAQQHGFIDSVGYDLYSQMLADAIQDRKGKTTIKKSNAEIDLGLEAY IPDSYIGDQEEKIEFYKKIKAVSSQEELGKIEDELIDRFGDYPTAVENLLAVAGLKVDAD MAQVLNVVKTDDKIKVEFTNAASRKLEGPNIFKALEHVSLKARISMNQEKRMVVLLLLPD KMKNRVLFNELATFLQAASDIVQR >gi|256541348|gb|ACPV01000126.1| GENE 18 19719 - 19961 325 80 aa, chain + ## HITS:1 COG:L1001 KEGG:ns NR:ns ## COG: L1001 COG1188 # Protein_GI_number: 15671997 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Lactococcus lactis # 1 79 17 95 105 79 55.0 2e-15 MRIDKFLKVSRLVKRRTVAKEMADQGRIKVNGRVVKSSYDVKIDDIIEVGYGAKTIKAKV LNIRETTKKAEASELYELVD >gi|256541348|gb|ACPV01000126.1| GENE 19 20029 - 20406 516 125 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00279 NR:ns ## KEGG: LCRIS_00279 # Name: not_defined # Def: septum formation initiator # Organism: L.crispatus # Pathway: not_defined # 1 125 1 125 125 198 100.0 4e-50 MNHGPRIYNSLSPEEQRARLRRKQAKLEKETHRKRLNVIMAVFAIIFVALGVQIAIKISQ TGRLNNQVQAEKQTLTKVKNKRNDLETEKQDLKDPNYVAKLIRYKFYYSKSNEKIYNVHE RNDDN >gi|256541348|gb|ACPV01000126.1| GENE 20 20406 - 20768 549 120 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58336615|ref|YP_193200.1| putative ribosomal protein S1 [Lactobacillus acidophilus NCFM] # 1 120 1 120 120 216 85 2e-55 MEKYQAGNRVTGVINNITDLGIFVTLPNRHSGLVHHSDFGNNWLRERRRYHVGDEVRVVV VHIHKGRFNLSITRVNDPELVDHDNQFSKTKPADFDQVLNQTTRDAKEEIEKLKQVLTEN >gi|256541348|gb|ACPV01000126.1| GENE 21 20807 - 22060 820 417 aa, chain + ## HITS:1 COG:lin0251_1 KEGG:ns NR:ns ## COG: lin0251_1 COG0037 # Protein_GI_number: 16799328 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Listeria innocua # 2 224 7 232 469 140 34.0 5e-33 MKINDFFEQHQIDLKDKRLLVAASAGPDSMALLDMLVNLQKQLSFTVFAAHFDHQLRADS SYEVEVLQNYCAQKKICLFNGKWDKHDQPQTGIEAAAREARYHFLTNVAHSERMNYLLTA HHGDDLLENILLKFIRSGNPEEMNSLQDIGSMHGVVLLRPLLAYSKQELLEYDQEREIDY VIDSTNTEDETVRNRLRHHVVPLLKEENPNLISNALRFSEKMSQLTDLADEQLNSMRTVE PFLGAWRIKTDNLNDLSTEEKNIFWQKIIWQKYHRRVNENLGNFEVIDYQGYSYLVENKP QKIVQPFSIELNQQFEFNGAYYLLTTDRQADLKEIGSFWLERDAHFTAGSLVPASKLLLK NGQRVKAKKKFAEKAIPFALRSCCITIYAENEPVFVEKCYQKQDFITDGKHYFLYIY >gi|256541348|gb|ACPV01000126.1| GENE 22 22155 - 24323 1234 722 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 3 669 2 636 636 479 41 1e-135 MKNNRNRLLSNGLFYIVVFLLLLWGINWALGGSNNSGSSENISYSQFVKDLRQGKVKNFS VQPANGVYTVSGSYKTAQTTKNQSNNSFDFFSNNSSRKVSRFSTTMLQNDSTVSNVQNLA QKSNARMTTQGESQSGNWISTIVMLVPTVLFIVMLWMMMNQGGAGRGGGGGIMNFGRSHV KPEDPSKNKVRFSDVAGEEEEKQELVEVVEFLKDPSKYTKLGARIPSGVLLEGPPGTGKT LLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFNNAKKNAPSIIFIDEIDAIGRR RGNGTGGGNDEREQTLNQLLVEMDGFEGDEGVIVIAATNRSDVLDPALLRPGRFDRKVLV GRPDVRGREAILKVHAKNKPLAPDVDLKEVARQTPGFVGADLANVLNEAALVAARRNGTE ITASDIDEAEDRVIAGPAKKDRLISEKERRRVAFHEAGHSICGLVLSDSRTVRKVTIVPR GRAGGYNIMLPKDDQFILTKKQLFEQIVGLMGGRAGEEATIGDKSTGASNDFEQATQIAH SMVVNYGMTESLGMVELEKEGESNPYGFKPYSEATSAKIDEAVKKILDEAHAKALEIVKD NKEKHRIIAEALLKYETLNEKQIMALYKTGKMPEKDEDEYPSESKASTYEEAKAAAEKRE VEKAEKKDSDQALADQEKDTLETPSEKNHEVEENNPENPEKDQSENETSTQDTPADDEHK DN >gi|256541348|gb|ACPV01000126.1| GENE 23 24376 - 25266 1143 296 aa, chain + ## HITS:1 COG:lin0254 KEGG:ns NR:ns ## COG: lin0254 COG1281 # Protein_GI_number: 16799331 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Listeria innocua # 1 279 1 282 294 262 46.0 6e-70 MSDYLVKSIDKTKNLRLLTITAKGVVSEAQKRHDLWSASAAVLGRTLVGSLLLAGAELTD KEELTVRLLGNGPVGPTIVTATSDLKVKGYVKNPHIALPPKKNGHIDVKKAVGQGWFEVT KDLGLKEPYTGQVPIVSGEIAEDFAYYLTKSEQIPSAVGLSVFVNPNNSIGEAGGFMLQA LPGASDALIDETIKRIDALPALSTSFLDGMTPEDLARKILGTDCKILEKDDVAFNCDCSK EKYAGILETLKSDQLKAMINEDHGAELTCNFCGNKYHYSEDELKDILAKKNKDKDY >gi|256541348|gb|ACPV01000126.1| GENE 24 25344 - 26369 480 341 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 6 321 29 343 353 189 33 2e-47 MNNSWKIRDITIPNRVVVAPMAGVSNSAFRVVCKEFGAGLVVCEMISDHGIIYGNKKTLS MMDVDPREHPMSIQIFGGSEETLLQAAQYIDQHTDADIIDINMGCPVPKVTKTDAGSKWL LDSNKIYQMVHAVVQNVKKPVSVKMRTGWDKKHIFAVENALAAQEAGASMIAMHGRTRKQ MYQGEADWEVLHDVAQVLDVPFVANGDIRTPELAKKALDEIGCTAVMVGRAALGNPWILK DMVHYLETGEKLKPQTVREKVETAKHQLHALVKIHGEKRAVPEFRQQAAYYLKGIPRSAR TRAKINEVWTRQEVYDLLDNFVDEYEKREEARAARRATMNK >gi|256541348|gb|ACPV01000126.1| GENE 25 26386 - 27936 2021 516 aa, chain + ## HITS:1 COG:SP0713 KEGG:ns NR:ns ## COG: SP0713 COG1190 # Protein_GI_number: 15900610 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Streptococcus pneumoniae TIGR4 # 5 493 3 491 491 650 66.0 0 MAKNEMNDQLIVRRQKMEELRENGIEPFGQRKFDRQDLASTLEEKYGNEDKEELNADMPK TKIAGRMLAKRGKGKVGFADLYDRTGKIQIYVRKDIVGEDNYKIFKKSDIGDFLGIEGEV MKTDTGELTIRALHVTFLSKALRPLPDKYHGLKDVEAIYRQRYLDLITNHDSYMRFVHRT QIIQAIRDYLNGQNFLEVETPVLHNIPGGAEARPFITHHNALDINLYMRIALELPLKRLI VGDMERVYEIGRVFRNEGLDTHHNPEFTELESYAAYWDYHDVMDEAEGIIRAAAKVVSDD GKITYQGTDIDLGKPFRRVHMVDLIKEKTGVDFWKPMTLEEATKIAEDHDIHVEKFWKVG HIINAFFEKYCEETIVDPTFVYGHPVEISPLAKKNADDPRFTDRFEIYIMGEEYGNAFSE LNDPDDQRERFEAQMEEREAGNDEADMIDEDYLRAMEYGMPPTGGLGIGIDRLVMLLTDA PAIRDVLLFPTMRPERVESVEAEVKADMEKKNKENK >gi|256541348|gb|ACPV01000126.1| GENE 26 28003 - 28458 432 151 aa, chain - ## HITS:1 COG:no KEGG:lhv_1122 NR:ns ## KEGG: lhv_1122 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 6 150 13 157 158 124 42.0 2e-27 MPKFNIREYQPNDYAEVCRIHDVSRKEELTIGGAEKYFIPLETAPYKDDFFSCKIYVAYD ADSILGFVAVHPQELDYIYVDPIHQNKGIGYALATTALRYMSRPVSLDVFAENTKAKKLY KKLGFKCQEVRYQQWDLNDPKKYSDEKMILN Prediction of potential genes in microbial genomes Time: Wed May 25 05:56:44 2011 Seq name: gi|256541347|gb|ACPV01000127.1| Lactobacillus crispatus 125-2-CHN cont1.127, whole genome shotgun sequence Length of sequence - 48040 bp Number of predicted genes - 62, with homology - 62 Number of transcription units - 17, operones - 9 average op.length - 6.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 38 - 493 325 ## PROTEIN SUPPORTED gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 + Prom 514 - 573 6.2 2 2 Tu 1 . + CDS 598 - 3078 2113 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 3189 - 3229 7.2 + Prom 3216 - 3275 6.0 3 3 Op 1 58/0.000 + CDS 3300 - 6938 4466 ## COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit 4 3 Op 2 . + CDS 6954 - 10613 4257 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit + Term 10631 - 10678 3.5 - Term 10619 - 10666 3.5 5 4 Tu 1 . - CDS 10676 - 11359 253 ## COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases - Prom 11404 - 11463 5.6 + Prom 11339 - 11398 11.7 6 5 Op 1 56/0.000 + CDS 11541 - 11948 693 ## PROTEIN SUPPORTED gi|227879239|ref|ZP_03997109.1| ribosomal protein S12 7 5 Op 2 51/0.000 + CDS 11964 - 12434 799 ## PROTEIN SUPPORTED gi|227879240|ref|ZP_03997110.1| ribosomal protein S7 8 5 Op 3 4/0.000 + CDS 12468 - 14561 3111 ## COG0480 Translation elongation factors (GTPases) + Term 14799 - 14836 4.7 + Prom 14578 - 14637 11.1 9 6 Op 1 40/0.000 + CDS 14877 - 15185 510 ## PROTEIN SUPPORTED gi|58336629|ref|YP_193214.1| 30S ribosomal protein S10 10 6 Op 2 58/0.000 + CDS 15209 - 15847 1083 ## PROTEIN SUPPORTED gi|227879243|ref|ZP_03997113.1| 50S ribosomal protein L3 11 6 Op 3 61/0.000 + CDS 15862 - 16479 1023 ## PROTEIN SUPPORTED gi|227879244|ref|ZP_03997114.1| 50S ribosomal protein L4 12 6 Op 4 61/0.000 + CDS 16479 - 16784 508 ## PROTEIN SUPPORTED gi|227879245|ref|ZP_03997115.1| ribosomal protein L23 13 6 Op 5 60/0.000 + CDS 16800 - 17636 1411 ## PROTEIN SUPPORTED gi|161506876|ref|YP_001576830.1| 50S ribosomal protein L2 14 6 Op 6 59/0.000 + CDS 17655 - 17939 481 ## PROTEIN SUPPORTED gi|227879247|ref|ZP_03997117.1| ribosomal protein S19 15 6 Op 7 61/0.000 + CDS 17959 - 18312 564 ## PROTEIN SUPPORTED gi|161506878|ref|YP_001576832.1| 50S ribosomal protein L22 16 6 Op 8 50/0.000 + CDS 18326 - 19000 1147 ## PROTEIN SUPPORTED gi|227879249|ref|ZP_03997119.1| 30S ribosomal protein S3 17 6 Op 9 . + CDS 19000 - 19440 751 ## PROTEIN SUPPORTED gi|161506880|ref|YP_001576834.1| 50S ribosomal protein L16 18 6 Op 10 . + CDS 19430 - 19627 316 ## PROTEIN SUPPORTED gi|58336638|ref|YP_193223.1| 50S ribosomal protein L29 19 6 Op 11 50/0.000 + CDS 19646 - 19912 437 ## PROTEIN SUPPORTED gi|161506882|ref|YP_001576836.1| 30S ribosomal protein S17 20 6 Op 12 57/0.000 + CDS 19944 - 20312 600 ## PROTEIN SUPPORTED gi|58336640|ref|YP_193225.1| 50S ribosomal protein L14 21 6 Op 13 48/0.000 + CDS 20332 - 20568 386 ## PROTEIN SUPPORTED gi|227879254|ref|ZP_03997124.1| 50S ribosomal protein L24 22 6 Op 14 50/0.000 + CDS 20583 - 21125 901 ## PROTEIN SUPPORTED gi|227879255|ref|ZP_03997125.1| ribosomal protein L5 23 6 Op 15 50/0.000 + CDS 21138 - 21323 333 ## PROTEIN SUPPORTED gi|161506886|ref|YP_001576840.1| 30S ribosomal protein S14 24 6 Op 16 55/0.000 + CDS 21348 - 21746 666 ## PROTEIN SUPPORTED gi|227879257|ref|ZP_03997127.1| ribosomal protein S8 25 6 Op 17 46/0.000 + CDS 21771 - 22301 894 ## PROTEIN SUPPORTED gi|227879258|ref|ZP_03997128.1| ribosomal protein L6 26 6 Op 18 56/0.000 + CDS 22328 - 22684 570 ## PROTEIN SUPPORTED gi|58336645|ref|YP_193230.1| 50S ribosomal protein L18 27 6 Op 19 50/0.000 + CDS 22702 - 23208 837 ## PROTEIN SUPPORTED gi|227879260|ref|ZP_03997130.1| 30S ribosomal protein S5 28 6 Op 20 48/0.000 + CDS 23226 - 23411 293 ## PROTEIN SUPPORTED gi|227879261|ref|ZP_03997131.1| 50S ribosomal protein L30 29 6 Op 21 53/0.000 + CDS 23435 - 23875 729 ## PROTEIN SUPPORTED gi|227879262|ref|ZP_03997132.1| ribosomal protein L15 30 6 Op 22 28/0.000 + CDS 23875 - 25170 977 ## COG0201 Preprotein translocase subunit SecY 31 6 Op 23 6/0.000 + CDS 25181 - 25837 662 ## COG0563 Adenylate kinase and related kinases 32 6 Op 24 2/0.000 + CDS 25913 - 26134 302 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 33 6 Op 25 . + CDS 26151 - 26267 210 ## PROTEIN SUPPORTED gi|227894543|ref|ZP_04012348.1| 50S ribosomal protein L36 34 6 Op 26 48/0.000 + CDS 26288 - 26638 583 ## PROTEIN SUPPORTED gi|58336653|ref|YP_193238.1| 30S ribosomal protein S13 35 6 Op 27 32/0.000 + CDS 26660 - 27052 652 ## PROTEIN SUPPORTED gi|161506897|ref|YP_001576851.1| 30S ribosomal protein S11 36 6 Op 28 50/0.000 + CDS 27098 - 28036 1101 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 37 6 Op 29 6/0.000 + CDS 28043 - 28447 656 ## PROTEIN SUPPORTED gi|227879269|ref|ZP_03997139.1| 50S ribosomal protein L17 + Term 28540 - 28590 3.1 + Prom 28545 - 28604 6.8 38 7 Op 1 15/0.000 + CDS 28632 - 29483 506 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 39 7 Op 2 34/0.000 + CDS 29453 - 30304 352 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 40 7 Op 3 8/0.000 + CDS 30308 - 31105 620 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 41 7 Op 4 7/0.000 + CDS 31110 - 31898 780 ## COG0101 Pseudouridylate synthase + Prom 31918 - 31977 3.3 42 7 Op 5 59/0.000 + CDS 32003 - 32446 764 ## PROTEIN SUPPORTED gi|227879274|ref|ZP_03997144.1| ribosomal protein L13 43 7 Op 6 . + CDS 32458 - 32853 671 ## PROTEIN SUPPORTED gi|227894553|ref|ZP_04012358.1| 30S ribosomal protein S9 + Term 32948 - 32980 4.0 44 8 Tu 1 . - CDS 32923 - 33975 832 ## COG0582 Integrase - Term 33990 - 34043 5.1 45 9 Op 1 . - CDS 34050 - 34238 136 ## FI9785_392 hypothetical protein 46 9 Op 2 . - CDS 34300 - 35220 609 ## LBA0027 putative replication initiator protein - Prom 35352 - 35411 5.4 - Term 35600 - 35648 2.5 47 10 Tu 1 . - CDS 35664 - 36422 524 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 36567 - 36626 7.4 + Prom 36493 - 36552 7.8 48 11 Op 1 . + CDS 36693 - 37766 1404 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold 49 11 Op 2 2/0.000 + CDS 37836 - 38294 692 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 50 11 Op 3 . + CDS 38316 - 39803 1505 ## COG3037 Uncharacterized protein conserved in bacteria 51 11 Op 4 . + CDS 39816 - 40118 483 ## EF1128 phosphotransferase enzyme II, B compnent SgaB 52 11 Op 5 9/0.000 + CDS 40137 - 40775 663 ## COG0269 3-hexulose-6-phosphate synthase and related proteins + Term 40819 - 40875 6.7 + Prom 40798 - 40857 3.8 53 12 Op 1 8/0.000 + CDS 40888 - 41769 967 ## COG3623 Putative L-xylulose-5-phosphate 3-epimerase 54 12 Op 2 . + CDS 41785 - 42513 886 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 55 12 Op 3 . + CDS 42530 - 43174 546 ## COG0546 Predicted phosphatases + Term 43181 - 43235 -1.0 + Prom 43194 - 43253 5.4 56 13 Tu 1 . + CDS 43297 - 45693 2648 ## COG3957 Phosphoketolase + Term 45740 - 45787 6.5 - Term 45728 - 45775 6.5 57 14 Op 1 . - CDS 45999 - 46205 192 ## COG3666 Transposase and inactivated derivatives 58 14 Op 2 . - CDS 46196 - 46375 116 ## LBA1907 transposase - Prom 46434 - 46493 4.4 + Prom 46172 - 46231 5.4 59 15 Tu 1 . + CDS 46449 - 46898 441 ## LCRIS_00333 acetyltransferase, GNAT family + Prom 46947 - 47006 4.6 60 16 Op 1 . + CDS 47027 - 47317 122 ## COG1476 Predicted transcriptional regulators 61 16 Op 2 . + CDS 47238 - 47678 262 ## gi|227879299|ref|ZP_03997166.1| hypothetical protein HMPREF0506_2167 + Term 47695 - 47731 3.1 + Prom 47771 - 47830 5.9 62 17 Tu 1 . + CDS 47866 - 48040 176 ## LCRIS_01522 response regulator of the LytR/AlgR family Predicted protein(s) >gi|256541347|gb|ACPV01000127.1| GENE 1 38 - 493 325 151 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 [Streptococcus pneumoniae R6] # 6 144 7 145 165 129 43 2e-29 MTATTEEKYKLLVEQARALIEGEDDWIANTANLSALLFNSLNDVNFAGVYRYENDELILG PFQGMPACVHIQMGKGVCGTAAQAKTTQIVKDVHEFAGHIACDSASNSEIVVPIFNQGKL WGVFDFDSTKLANFDEIDKKYLTEIAKAIFA >gi|256541347|gb|ACPV01000127.1| GENE 2 598 - 3078 2113 826 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 809 2 805 815 818 51 0.0 MENSYSKSVNQVLKIAREQAQNFHHRLIGTEHVLLALVIETDGEAGKILRSWGLTPTAVR EEIERYTGYGSAPKASYMEMSPRLSLALDYARRRANDDGVKEVNTNHVLLGITASEQVLS AMILKNLNVDIPRLQQDVEDSLSQDQDFGDSANWLGDDNTTTGQKKRKSTTPNLDKVAVN LNQRVRNGEIDPVIGRDQEIKRVIQILSRRTKNNPVLVGEPGVGKTAVAEAIATEIVNKK VPQDMLKKRVMALNLGSLVAGTKYRGEFEDRMKKILNEVTKDGNVILFVDEMHTLIGAGG AEGAIDASNILKPSLARGDIQMIGATTFNEYQKYIEKDQALARRFQQVRLSEPSRDDTLT IMRGLKSKYEKFHHVTISDESLKDAVDLSTRYISDRFLPDKAIDLVDEASAAVKIRNNIS NDAELEKVNEQIKKLITQKNMAAASQNFVKAAQLQDEQNNLEMQREAMVEKLEDKVSAKA VVEPEDIAKVVSNWTGVPVTQMKRNESRQLANLEKILHQRVIGQDKAVSAVARAIRRSRS GIKDERRPIGSFLFLGPTGVGKTELAKSVAAAMFGSEDNLIRLDMSEYMDQIASSKLIGS APGYVGYEEGGQLSEKVRRHPYSVILLDEVEKAHPDVFNLLLQVLDEGFLTDSKGRKVDF RNTIIIMTSNLGSRSLFDNKAVGFNADNADPAKARSAKVEQAIKQFFRPEFLNRIDETII FDELDKKQLRNIVTLLTHKLVVRLQKKGIELKLSRAALDQIAQDGYDPENGARPLRRAIQ NDIEDKIAEMLIVGEVKSGDTLKIGSQHGHLKFEVVNPKKETVKVK >gi|256541347|gb|ACPV01000127.1| GENE 3 3300 - 6938 4466 1212 aa, chain + ## HITS:1 COG:lin0285 KEGG:ns NR:ns ## COG: lin0285 COG0085 # Protein_GI_number: 16799362 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta subunit/140 kD subunit # Organism: Listeria innocua # 3 1164 5 1167 1184 1683 70.0 0 MLNGHVVNYGKHRTRRSFSRIKEVLKLPNLTDVQTESYKWFLDKGIKEVFDDIMPISDFS GKLSLEYVGYKLQKPKYTVDEARNHDATYAAPMHVTLKLTNQETGEIKTQDVFFGDLPLM TESGSFIVNGAERVIVSQLVRSPGVYYTGDYDKNGRQIFGTTVIPNRGAWLEYETDAKNV SFVRVDRTRKLPLTVLIRAMGIGSDSDIIDMFGQSDTLQFTLDKDVHKNPADSRVAEALK DIYERLRPGEPKTTDSSRSLLYARFFDPRRYDLAPVGRYKINKKLSLKNRLYGQTLAETL ADPDTGEIVAKKGTVVTHEVMDKLAPYLDRDDFKMVTYQPSKEGVLPDPITVQEIKVYSK VDPEREVKLMSNGHIADNVKHLTPADVLASINYFFALQDEIGTTDDIDHLGNRRIRRVGE LLQNQFRIGLARMERVVRERMSIQDPSTVTPQQLINIRPIVASIKEFFGSSQLSQFMDQH NPLGELTHKRRMSALGPGGLTRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSLASY AIINKYGFIETPYRRVSWKDHKVTDKIDYLTADEEDNYIIAGANTPLNDDGSFKEKLILA RQKEDNVEVSPDKIDYMDVIPKQVVSVASACIPFLENDDSNRALMGANQQRQAAPLINPH GSLVGTGMEYRAAHDSGAALIAKAAGVVEYVDANEIRIRREDGTLDKYTLEKYRRSNNSK SYNQTPNVKLGDQVDKSDVIANGPTMDHGELALGQNPLIAFMTWNMYNYEDAIMLSERLV KDDVYTSISIEDYESEARDTKLGPEEITRELPNIGEDALKDLDADGIVRVGAEVHDGDIL VGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDVKVYTREAGDELS PGVNRMVRVYIAQKRKIQVGDKMSGRHGNKGTVAAVVPEEDMPYLPDGTPVDICLNPMGV PSRMNIGQLLELHLGAAARQLGIHVATPVFDGADENDVWDTVRQAGVDKDGKTVVYDGRT GEPFHNRVSVGVMHYLKLTHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWA LEAYGAAYTLQEILTYKSDDVVGRVKAYEAIVKGEKIPKPGVPESFRVLVKELQSLGLDI RVLDMNHNEIELRDMDEDSSEHLNIDTLSRMAEEQEKKKLAEETGKSEDKDSKENADKPV APADESDDKVSK >gi|256541347|gb|ACPV01000127.1| GENE 4 6954 - 10613 4257 1219 aa, chain + ## HITS:1 COG:SPy0099 KEGG:ns NR:ns ## COG: SPy0099 COG0086 # Protein_GI_number: 15674322 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Streptococcus pyogenes M1 GAS # 1 1192 1 1190 1213 1676 68.0 0 MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWSC ACGKYKGVRYRGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDI SPRLLEEVIYFAAYIVIDPGDTDLEPKQLLTEAEYREQKAKYGNRFEAKMGAEAVRDLLK KVDLDKEVKDLKKELQTATGQKRTRAIRRLDILDAFKNSGNKPEWMVMDAVPVIPPDLRP MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR RGRPVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP MALELFKPFVMHELVKRGIASNIKNAKRKIDREDDDIWDILEDVIKERPVLLNRAPTLHR LSIQAFEPILVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHIL APKDGKPIVTPSQDIVLGNYWLTQAERGREGEGMIFSSPAEAAVAYENGDIHYHTIIGMS ADAVPKKPWPKGHEHGIFITTYGKIVFNQLFPDDYFYINEPTEENLNNPLDAKYFLGEGE EIDKKIDEVGDDLIASPFKGSFLSDSIATIYKYYKVQRTSEYLDDLKKLGYTSSTTSGIT IGMTDVPEIQDKDEKVAQARKQVDVVSKQFRRGLITEQERHDRVISIWNACKDKIQNEIA QIHAPRNPISIMADSGARGNISNFTQLAGMRGLMATPNGGLFEIPVTSNFKEGLSVLELF MSTHGARKGMTDTALKTAQSGYLTRRLVDVAQDVIIRDDDCGTDRGITVSAIMEGDEMIE PLFDRLVGRFTAETVKDPETGETIVGRDVMMDENMAHKICDAGVTHVKIRSILTCDTPHG VCRKCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTLRTFHNGGVAGAEDITQGLPRV QELFEARNPKGRATISEVDGVIDSIQENPAEHTREITVKGKIDTRSYSVPYTASVAVSEG DYVHRGDKLTLGSVDPKELIQVTDTLTTEKYILAEVQKAYRMQGVDIADKHVEVLTRQML QKVRVLDPGETDILPGEVMDIGQFRDRNKEVIISGGIPATAQSVILGITKAALETNSFLS AASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGMPVYRSMEPEADVKKPDSV YSIADIEKQMKEKDKAKQD >gi|256541347|gb|ACPV01000127.1| GENE 5 10676 - 11359 253 227 aa, chain - ## HITS:1 COG:SP1808 KEGG:ns NR:ns ## COG: SP1808 COG1989 # Protein_GI_number: 15901637 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases # Organism: Streptococcus pneumoniae TIGR4 # 7 222 4 210 219 65 32.0 6e-11 MKYLFIFTNFIIGSCLASHAAVVYEHWNDKNFIYSRSQCNNCHLELSILDEIPLLSYLFL QGKCRYCYQQIPVELFLFELIGGFAFCLLDFSKTQDIITAILLFSLLVVAISDYQKQEFD LLLLIPAISVAILFNQFAAFTLIDWISFTLLLGIFSYSIMQRKMGLGDLLIYLIIACYFT PSFANLVFLFASILVIAIFLIEKTPINHRYPFIPYIFLGLVLTQLIF >gi|256541347|gb|ACPV01000127.1| GENE 6 11541 - 11948 693 135 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879239|ref|ZP_03997109.1| ribosomal protein S12 [Lactobacillus crispatus JV-V01] # 1 135 1 135 135 271 100 5e-72 MPTINQLVRKGRHSKVTKSKSPALNYSYNSMKKESVFNPAPQMRGVATRVGTMTPKKPNS ALRKYARVRLSNLIEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGV DGRKQSRSKYGTKKD >gi|256541347|gb|ACPV01000127.1| GENE 7 11964 - 12434 799 156 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879240|ref|ZP_03997110.1| ribosomal protein S7 [Lactobacillus crispatus JV-V01] # 1 156 1 156 156 312 100 3e-84 MPRKGHVTKRDVLADPVYNSKLVTKLINHLMVDGKRAKASSILYDAFNIVQDKTGKEPLD VFEEAMNNVMPVLEVRARRIGGSNYQIPVEVRPERRTTLGLRWLVSYARLRNEHTMDERL ANEIIDASNNTGSAVKKREDVHRMAEANRAFAHYRF >gi|256541347|gb|ACPV01000127.1| GENE 8 12468 - 14561 3111 697 aa, chain + ## HITS:1 COG:SP0273 KEGG:ns NR:ns ## COG: SP0273 COG0480 # Protein_GI_number: 15900207 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Streptococcus pneumoniae TIGR4 # 5 695 3 692 693 985 71.0 0 MANKREFPLAKTRNIGIMAHIDAGKTTTTERILYYTGKIHKIGETHEGDSQMDWMDEEKE RGITITSAATTAQWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVTVLDAQAGVEPQTEN VWRQAETYGVPRIVFVNKMDKIGADFDKSVKSLHERLNANAHAVQMPIGSADTFEGVIDL INMVADIYDEDKLGSKWDTVPVPDEYKEEAEARRNDLIEAVADVDDGIMEKFLGGEEISN DELKAAIRKATLDLKFFPVYAGSAFKNKGVQMMLDGVIDYLPSPLDVKPYVAHNPKTGDE VELMADDKKPFAALAFKIATDPFVGRLTFIRVYTGSLESGSYVLNASKNSRERVGRLLQM HANSRTEIPEVFSGDIAGAIGLKNTTTGDSLTDPDHPLILESLKVPDPVIQVSVEPKSKA DRDKMDVALQKLTEEDPTFRAETNPETGQTLISGMGELHLDIMVERMRREFNVDAKIGEP QVAYRETFTKEAKAQGKFVRQSGGKGQYGDVWIDFTPNEEGKGYEFEDAIVGGVVPREFI PSVDQGLQEAMKNGVLAGYPLIDVKAKLYDGSYHEVDSSEAAFKVAASLALKNAASKAGA VILEPIMKVQVTTPEEYLGDVMGSITARRGTMEGMEDRAGAKIINSFVPLSEMFGYATTL RSSTQGRGTFTMVFDHYSPTPKSIQADIIKKRGGDAE >gi|256541347|gb|ACPV01000127.1| GENE 9 14877 - 15185 510 102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58336629|ref|YP_193214.1| 30S ribosomal protein S10 [Lactobacillus acidophilus NCFM] # 1 102 1 102 102 201 100 9e-51 MASQTIRIRLKSYEHGILDESAAKIVATAKRTGAEISGPVPLPTERTLFTVLRSPHKNKD SREQFEMRTHKRLIDILNPTPKTVDSLMKLDLPSGVDIEIKL >gi|256541347|gb|ACPV01000127.1| GENE 10 15209 - 15847 1083 212 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879243|ref|ZP_03997113.1| 50S ribosomal protein L3 [Lactobacillus crispatus JV-V01] # 1 212 1 212 212 421 100 1e-117 MTKGILGRKVGMTQIFTKDGVLVPVTVVEATPNVVMQVKTVESDGYEAVQLGYQDKREVL SNKPEKGHADKAKTSPKRFIREIRGVELKDYEVGSEVTVDTFKEGDVVNVTGTSRGHGYQ GNIKRWGQSRGPETHGSRYHRIPGSMGSIINRVPKGKRLPGHMGVKKVTIENLVIEKVVA DKNVLMIKGNVPGAKNSLIVVKTASKAVKADK >gi|256541347|gb|ACPV01000127.1| GENE 11 15862 - 16479 1023 205 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879244|ref|ZP_03997114.1| 50S ribosomal protein L4 [Lactobacillus crispatus JV-V01] # 1 205 1 205 205 398 99 1e-110 MANLKVMDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGKRQGTSKVKNRSAVRGG GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSRKLID NDLIVLDKLTMSAPKTKELVSILNGLNADGKVLIVSDDNNVQLSARNLTKVKVVPVNGLN VEDAVNYGKLILDQDAVKKIEEVLA >gi|256541347|gb|ACPV01000127.1| GENE 12 16479 - 16784 508 101 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879245|ref|ZP_03997115.1| ribosomal protein L23 [Lactobacillus crispatus JV-V01] # 1 101 1 101 101 200 100 2e-50 MDARDIILRPVITEKSTNLMDDKKYTFDVLLTATKTQVRNAVEEIFDVKVKNVNIMNVRG KDKRVGRYTGKTARRRKAIVTLTNDSNDIKIFQDDNTEDNK >gi|256541347|gb|ACPV01000127.1| GENE 13 16800 - 17636 1411 278 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161506876|ref|YP_001576830.1| 50S ribosomal protein L2 [Lactobacillus helveticus DPC 4571] # 1 278 1 278 278 548 96 1e-155 MAIKIYKPTTNGRRHMTSSDFAEITKTKPEKTLLESQSHTAGRNSYGHITVRHRGGGHKQ KYRIIDFKRNKDNAKAVVKAIEYDPNRTANIALLHYTDGIKAYILAPKGLKVGDVVESGD SVDIKPGNALELKNIPTGTSIHNIELKPGKGGQLVRSAGASAQVLGADGDYTLVRLQSGE VRKILSSCRATIGTVGNEQHSLIQLGKAGRKRWLGKRPQSRGSVMNPNDHPHGGGEGKAP VGRPQPMTPWGKKARGIKTRDTKKASEKLIIRHRKGSK >gi|256541347|gb|ACPV01000127.1| GENE 14 17655 - 17939 481 94 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879247|ref|ZP_03997117.1| ribosomal protein S19 [Lactobacillus crispatus JV-V01] # 1 94 1 94 94 189 98 2e-47 MSRSIKKGPFADASLLKKVDAQADADKKQVIKTWSRRSTIFPSFVGLTIAVYDGRKHVPV YVTEDMVGHKLGEFVPTRTFHGHKSTDDKATPQA >gi|256541347|gb|ACPV01000127.1| GENE 15 17959 - 18312 564 117 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161506878|ref|YP_001576832.1| 50S ribosomal protein L22 [Lactobacillus helveticus DPC 4571] # 1 117 1 117 117 221 100 5e-57 MAEQISSAKAEARTVRIAPRKARLVVDLIRGKSVAEALAILEFTPRAASPIVEKVLRSAI ANAEHNYDLESANLYVSEAYVNEGATLKRFRPRAKGMASPINKRTSHVVVVVSEKND >gi|256541347|gb|ACPV01000127.1| GENE 16 18326 - 19000 1147 224 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879249|ref|ZP_03997119.1| 30S ribosomal protein S3 [Lactobacillus crispatus JV-V01] # 1 224 1 224 224 446 100 1e-124 MGQKINPNGFRLGVIRDWESKWYADKGYKETLNEDLQIRKFISEKLKDASVSTVEIERAA NRINISIHTAKPGMVIGKGGSEVEALRKQLNALTGKQVHINIVEIKKPDLDAKLVADSIA RQLEARIAFRRAMRQATQRAMRAGAKGIKVQTSGRLNGADMARREWHTEGRVPLQTLRAD IDYAWVNAFTTYGEIGVQVWINRGEILPTRKNKPASKPAKGGNR >gi|256541347|gb|ACPV01000127.1| GENE 17 19000 - 19440 751 146 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161506880|ref|YP_001576834.1| 50S ribosomal protein L16 [Lactobacillus helveticus DPC 4571] # 1 146 1 146 146 293 100 1e-78 MPLVPKRVKHRREFRGKMRGAAKGGKYIAFGEYGLEALESHWITNRQIEAARVAMTRYMK RGGKVWIRIFPQKSYTAKGVGVRMGSGKGAPAGWVAVVKREKIMFEIGGVDEATAREALR LASTKLPIKTKFVTRSSEVGGESNEG >gi|256541347|gb|ACPV01000127.1| GENE 18 19430 - 19627 316 65 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58336638|ref|YP_193223.1| 50S ribosomal protein L29 [Lactobacillus acidophilus NCFM] # 1 65 1 65 65 126 100 3e-28 MKAKDIRALTTDEMLEKEKQYKEELFNLRFQQATGQLENTARLSKVRKNIARIKTILSEK ALENN >gi|256541347|gb|ACPV01000127.1| GENE 19 19646 - 19912 437 88 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161506882|ref|YP_001576836.1| 30S ribosomal protein S17 [Lactobacillus helveticus DPC 4571] # 1 88 1 88 88 172 96 3e-42 MSETSERNRRHVYQGRVVSDKMDKTIVVVVDTYKNHPVYNKRIRYSKKYYAQDENNEAKV GDTVRIMETRPLSRKKRFRLVKIVKKSV >gi|256541347|gb|ACPV01000127.1| GENE 20 19944 - 20312 600 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58336640|ref|YP_193225.1| 50S ribosomal protein L14 [Lactobacillus acidophilus NCFM] # 1 122 1 122 122 235 99 3e-61 MIQNESRLKVADNSGARELLVIRVLGGSKRKTGNIGDIVVCTVKQATPGGVVKKGDVVKA VIVRTKSGARREDGSYIKFDENAGVIINADKSPRGTRIFGPVARELRENDFMKIVSLAPE VL >gi|256541347|gb|ACPV01000127.1| GENE 21 20332 - 20568 386 78 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879254|ref|ZP_03997124.1| 50S ribosomal protein L24 [Lactobacillus crispatus JV-V01] # 1 78 1 78 78 153 100 2e-36 MFVKTGDKVKVIAGKDKGKEGTVLSVNVKKNRVVVKGVNKIKKHQKPSQSNANGGVVESE GSIHASNVKVISSKKEDK >gi|256541347|gb|ACPV01000127.1| GENE 22 20583 - 21125 901 180 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879255|ref|ZP_03997125.1| ribosomal protein L5 [Lactobacillus crispatus JV-V01] # 1 180 1 180 180 351 100 4e-96 MASYLAKEYNEKVAPALEEKFNYKSSMQVPKIDKIVLNMGVGDAVSNAKNLDEAVEELTL ISGQKPLITKAKKSIANFRLREGMSIGAKVTLRGDRMYDFLYKLINVSLPRVRDFRGVST RSFDGRGNYTLGIKEQLIFPEIDFDKVNRTRGLDIVIVTTANTDEEARELLTQFGMPFAR >gi|256541347|gb|ACPV01000127.1| GENE 23 21138 - 21323 333 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161506886|ref|YP_001576840.1| 30S ribosomal protein S14 [Lactobacillus helveticus DPC 4571] # 1 61 1 61 61 132 100 3e-30 MAKTSQKIRNRRPAKFSSREYTRCERCGRPHSVYRKFGLCRICLKELAHKGQIPGLKKAS W >gi|256541347|gb|ACPV01000127.1| GENE 24 21348 - 21746 666 132 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879257|ref|ZP_03997127.1| ribosomal protein S8 [Lactobacillus crispatus JV-V01] # 1 132 1 132 132 261 100 7e-69 MVMTDPIADYLTRIRNANMAKHDSVEIPASNIKKSISEILKREGFIRDYEVADDNKQGVI KVFLKYGPNGERVISGLKRISKPGLRNYVGAEDLPKVLNGLGIAIVSTSAGVITDKEARQ KNVGGEVIAYIW >gi|256541347|gb|ACPV01000127.1| GENE 25 21771 - 22301 894 176 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879258|ref|ZP_03997128.1| ribosomal protein L6 [Lactobacillus crispatus JV-V01] # 1 176 1 176 176 348 100 3e-95 MSRIGLKTIEVPDSVTVTKEGDNITVKGPKGELTRYFDPKIKFEQKDGEINFSRSSESDK ALHGTERANLASMIEGVVDGYKKTLKLIGVGYRAQAQGNKITLNVGYSHPVVLTAPEGVS VKATSATDVEVEGVSKQDVGQFAAEIRAVRPPEPYKGKGIRYVDEYVRRKEGKTGK >gi|256541347|gb|ACPV01000127.1| GENE 26 22328 - 22684 570 118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58336645|ref|YP_193230.1| 50S ribosomal protein L18 [Lactobacillus acidophilus NCFM] # 1 118 1 118 118 224 97 1e-57 MISKPDKNKLRLKRHRRIRGKISGTAERPRLSIFRSNKNIYAQLIDDVAGVTLASASTLD ENVSDATKVEQAAAVGKAIAEAAKAKNISTVVFDRSGYLYHGRVQALADAARENGLDF >gi|256541347|gb|ACPV01000127.1| GENE 27 22702 - 23208 837 168 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879260|ref|ZP_03997130.1| 30S ribosomal protein S5 [Lactobacillus crispatus JV-V01] # 1 168 1 168 168 327 100 1e-88 MANRNDSRNNRRNKDDIEDQLVAVNRITKVVKGGRRMRFAALVVVGDKKGRVGFGTGKAQ EVPEAIRKAVEDGKKKMINVPKVGTTIPHEVIGHYGSGNILLKPAEAGSGVAAGGAVRIV MDMAGISDVTSKSLGSNTPINVVRATIDGLKKLRTSEEVAKLRQPERA >gi|256541347|gb|ACPV01000127.1| GENE 28 23226 - 23411 293 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879261|ref|ZP_03997131.1| 50S ribosomal protein L30 [Lactobacillus crispatus JV-V01] # 1 61 1 61 61 117 100 1e-25 MTDLKITLIRSVAHRLPQQRKIVKALGLGRVDSTVVLPDNAATRGALLKIAHLISVEEIN K >gi|256541347|gb|ACPV01000127.1| GENE 29 23435 - 23875 729 146 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879262|ref|ZP_03997132.1| ribosomal protein L15 [Lactobacillus crispatus JV-V01] # 1 146 1 146 146 285 99 4e-76 MKLHELHSAEGSRRNRKRVGRGTSSGYGKTSGRGQKGQLARQGGHTRLGFEGGQMPLFRT MPKRGFKNINRKEYAIVNLDDLNKLEDGSEVTVESLKDNGLVKKELSGVKLLGKGELKVK LTVKVNKVSASAKQAVEAAGGTVEVI >gi|256541347|gb|ACPV01000127.1| GENE 30 23875 - 25170 977 431 aa, chain + ## HITS:1 COG:L0333 KEGG:ns NR:ns ## COG: L0333 COG0201 # Protein_GI_number: 15674060 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecY # Organism: Lactococcus lactis # 2 430 3 432 439 441 52.0 1e-123 MFSTLKNAFKDKEIRNKLYFTLFILLLYRIGANITVPGVNAKAITQVAQTGLVPMLDTVS GGGLDNYSIFSLGVSPYITAQIVIQLLQMDIVPTLVEWGKQGEVGRRKTNQVTRYLALVV AFIQSIGITLGFNALTQMGLVKNQTPQTYIEIAIIMTAGTMLLTWLGDEITDKGLGNGIS VIIFAGIIARLPSGLWQIYKEEIINNSASDRWQGILFFIAVIVAILIVTQFVTWVEQADR RIPIQYTRRATMSGSESFLPLKVNVSGVIPVIFASSFIVTPATILMAFQRTQGDQQWFKV MNQIFSLQTTPGVIIYTLLIILFTFFYAFVQVNPEKLAENLQKQGAYIPSVWPGKDTQDY ISKMLMKLSTVGSLFLGLVALLPQLATNFWNLPSSIGLGGTSLLIVIGVVLELSRQINGL LMKREYVGFIR >gi|256541347|gb|ACPV01000127.1| GENE 31 25181 - 25837 662 218 aa, chain + ## HITS:1 COG:lin2760 KEGG:ns NR:ns ## COG: lin2760 COG0563 # Protein_GI_number: 16801821 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Listeria innocua # 2 216 1 214 215 234 56.0 1e-61 MINLILLGLPGAGKGTASERIVDKYHLTHISTGDMFREAMANKTKVGLEAKSYIDKGNLV PDEVTAKLVEERLSQPDIKEGFILDGFPRTTVQAELLDGITKRLEKPLTNVIALEVDEDT LIKRLSARYMCKNCGATYNKLSKQPKVEGTCDRCGGHEFYQREDDKPEVVKNRLEVNEKM NAPLKDFYQKKGLLTVINGEQTPEKVFEDIDAVLSNNQ >gi|256541347|gb|ACPV01000127.1| GENE 32 25913 - 26134 302 73 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 71 1 71 72 120 84 1e-26 MAKDDVIEVEGKVVDTLPNAMFKVELENGATILAHVSGKIRMHYIRILPGDRVTVELSPY DLTKGRITYRFIK >gi|256541347|gb|ACPV01000127.1| GENE 33 26151 - 26267 210 38 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227894543|ref|ZP_04012348.1| 50S ribosomal protein L36 [Lactobacillus ultunensis DSM 16047] # 1 38 1 38 38 85 100 5e-16 MKVRPSVKPMCEHCKVIKRHGRVMVICSANPKHKQRQG >gi|256541347|gb|ACPV01000127.1| GENE 34 26288 - 26638 583 116 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58336653|ref|YP_193238.1| 30S ribosomal protein S13 [Lactobacillus acidophilus NCFM] # 1 116 1 116 116 229 98 3e-59 MARIAGVDLPRDKRIVIALTYIYGIGEATAKKICADAGVSEDIRSKDLTPEDQEKLRAEV DKYRVEGDLRREVSMNIKRLVDIGSYRGIRHRRGLPVRGQNTKNNARTRKGTKRNR >gi|256541347|gb|ACPV01000127.1| GENE 35 26660 - 27052 652 130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161506897|ref|YP_001576851.1| 30S ribosomal protein S11 [Lactobacillus helveticus DPC 4571] # 1 130 1 130 130 255 99 3e-67 MMPAKKTARKRRVKKHVESGVAHIHSTFNNTLVMITDVQGNAVAWSSAGALGFKGSRKST PFAAQMAAEAAAKSAMDQGMKHVEVSVKGPGAGRESAIRSLQATGLEITAIRDVTPVPHN GSRPPKRRRV >gi|256541347|gb|ACPV01000127.1| GENE 36 27098 - 28036 1101 312 aa, chain + ## HITS:1 COG:BH0162 KEGG:ns NR:ns ## COG: BH0162 COG0202 # Protein_GI_number: 15612725 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Bacillus halodurans # 1 312 1 314 314 386 64.0 1e-107 MIEFEKPNITVVEQEDSYGKFVVEPLERGFGTTLGNSLRRVLLTSIPGTGLVYVQIDGVL HEFSTVPGVREDVTKIILNLKKLELKSLSDEQKVIELDIEGPATVTADDLKVDADVQVLN PDQYICTIAEGGHLHMELAVKNGRGYVAASDNKSDDMPIGVIPVDSLFSPIKKVNYQVES TRVGKRDDFDKLTFEIWTDGSIKPNDALSFAAKILVEHFKVFESADANAKFSEVMVEKED DKKEKKLEMTIEELDLSVRSYNCLKRAGINTLQELTDKTESDMMRVRNLGRKSLEEVKNK LTDLGLSLRQED >gi|256541347|gb|ACPV01000127.1| GENE 37 28043 - 28447 656 134 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879269|ref|ZP_03997139.1| 50S ribosomal protein L17 [Lactobacillus crispatus JV-V01] # 1 134 1 134 134 257 99 1e-67 MNKGGKSMAYRKLGRDSAHRKAMLREMTTQLIMNERIVTTETRAKEVRKTAEKMITLGKR GDLAARRKAAAFVRDEVADVHEEKDAVVVKSALQKLFSDVAPRYKDRNGGYTRILKLAVP RKGDAAPMVILELV >gi|256541347|gb|ACPV01000127.1| GENE 38 28632 - 29483 506 283 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 1 277 124 397 398 199 38 3e-50 MPVDSAVEFKDVSFTYPDTKKAILDQISFKIKRGSWTSLIGHNGSGKSTISKLINGLLLP DSANNSRITVLGMTLNQKTVWDVREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPREQ MVKIVRKVLADVGMLDYIDAEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPKGR EQVLKIIKHLKKEKNLTVISITHDIDEANMADNVIVLNDGKILAQGTPTEIFSKTEMLQE IGLDIPFVQKLINKLNEVGISVPKNIKTKDELKQYLCQLNLKK >gi|256541347|gb|ACPV01000127.1| GENE 39 29453 - 30304 352 283 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 1 238 126 355 398 140 34 2e-32 ISMSIKFEKVNYIYSPGTSMEKKGLDNVSFELTENSFVALVGHTGSGKSTLMQHFNALLK PSSGTIDIAGYHITAQTGNKNLKKLRKRVSLVFQFPEAQLFENTVLEDIEFGPKNFGATD DEAKSKALKWLKRVGLDKSLANKSPFELSGGQMRRVAIAGVMADEPEILCLDEPAAGLDP KSRKEMMKLFVDYQKAGHTVILVTHNMDDVAEYADDVLVMEHGKLIRHDAPKAIFTNKNW LEKHYLSEPTASLFASDLTNFNFKDKPLTLDQLVNEIKKNLRG >gi|256541347|gb|ACPV01000127.1| GENE 40 30308 - 31105 620 265 aa, chain + ## HITS:1 COG:lin2783 KEGG:ns NR:ns ## COG: lin2783 COG0619 # Protein_GI_number: 16801844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Listeria innocua # 1 249 2 250 266 245 50.0 6e-65 MSKIIVGRYIPGDSLIYKMDPRSKLLVTILFILAIFLANNSITYAIVTIFCFLAVIATGL NAKVFWDGVKPLIGLIFFTSLLQLFFMTGGHIYWHWWIFSLSSYGLINAIYIFIRFTLII LISTVMTVTTMPLEIADAMEWLLKPLKLFKVPVDKIALVISIALRFVPTLFDETFKIMNA QRSRGADFNDGGLIQRAKAITPILVPLFIQSLETAIDLSTAMESRGYRSSEGRTKYRVLS WSKYDLIALFYFVLLVGLLLIFRTH >gi|256541347|gb|ACPV01000127.1| GENE 41 31110 - 31898 780 262 aa, chain + ## HITS:1 COG:SP1599 KEGG:ns NR:ns ## COG: SP1599 COG0101 # Protein_GI_number: 15901439 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Streptococcus pneumoniae TIGR4 # 3 251 2 249 249 228 46.0 1e-59 MTTRYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGQRVIVQVSGRTDAGVHAV GQVIHFDYPGKTIPANRMILAMNSMMPTDIIFDDCQIVDENFHARYSIKGKWYRYRVSLD HFVNPFKRFYTGHFPYPLDIEKMQVAAQDLLGKHDFTSFAASGGQIEDKVRTIYYINITK DEKENEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPIHDLQRVIAAKDRQEVRQTAHAS GLYLYHVFYDEIPQKYRLEQHL >gi|256541347|gb|ACPV01000127.1| GENE 42 32003 - 32446 764 147 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879274|ref|ZP_03997144.1| ribosomal protein L13 [Lactobacillus crispatus JV-V01] # 1 147 1 147 147 298 99 3e-80 MRTTPLAKSSEIERKWYIIDATDVTLGRLSAAVATILRGKNKPQYTPNVDTGDNVIVINA SKIRLTGKKASDKFYYHHSSWRGGLKAVSYGELLANNPVKMVEISVKGMLPKNTLGHHEF MKMHVYAGEDHKHEAQKPEKLDINKLI >gi|256541347|gb|ACPV01000127.1| GENE 43 32458 - 32853 671 131 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227894553|ref|ZP_04012358.1| 30S ribosomal protein S9 [Lactobacillus ultunensis DSM 16047] # 1 131 1 131 131 263 98 2e-69 MAQQAAYTGTGRRKDSVARVRLVPGNGKITVNDKDVDQYIPFPNLVKDLKQPLTLTETEG QYDIHVNVNGGGFSGQAGAIRLGIARALLEVDPDFRGPLKKAGFLTRDPRMKERKKPGLK KARKASQFSKR >gi|256541347|gb|ACPV01000127.1| GENE 44 32923 - 33975 832 350 aa, chain - ## HITS:1 COG:lin2601 KEGG:ns NR:ns ## COG: lin2601 COG0582 # Protein_GI_number: 16801663 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 52 347 2 310 314 99 25.0 9e-21 MASIEKRGSSYRARVTIYQHGKRDYLTKSFKTEKEAKVWSTTLELQKAKGQAIAQQNTLF KDFYYLFVQTVKVHDVRKATFDNYVKAGKVIDNLFPTAKLGKLDDVQMQSILDKYGKTHS KKTVTELLKKIRTALRYAYVKGYIYNDFASLLKAHGKELPKRNKASSMSDLTKLKHYLLE HTDNEFNLMVLLEISTGLRRGEILGIKPEDVHYDGQYYCVEVKRSISPTTDDTKLKTKHS RRSVTIPKNIYDLLKDISQKDSGYLFDWFSFKQSGMLKELLKKIGIPSTTFHGLRDTHAS FLFSNNIPLSYVSRRLGHDSILTTEKYYLELMPEKKHSQDANALNLLESL >gi|256541347|gb|ACPV01000127.1| GENE 45 34050 - 34238 136 62 aa, chain - ## HITS:1 COG:no KEGG:FI9785_392 NR:ns ## KEGG: FI9785_392 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 62 1 62 62 89 88.0 4e-17 MAKLLTREEASKYIGIDPKTFDKVFRSDPDFKRFKLGEHTERFTIKSIEAFIDLKETKLK KI >gi|256541347|gb|ACPV01000127.1| GENE 46 34300 - 35220 609 306 aa, chain - ## HITS:1 COG:no KEGG:LBA0027 NR:ns ## KEGG: LBA0027 # Name: repB # Def: putative replication initiator protein # Organism: L.acidophilus # Pathway: not_defined # 1 253 61 313 313 423 83.0 1e-117 MLHFKDAKTISRVSKIFNDHEQYIEAWHSIINNGYSYLIHETTNAKSKHHYDPKEVVASF DFKDRINEIRQKVKKPSRQAIENFIDDYSNEKITKEELQEEIGVLEMAKHKTLLDHIEDI LAYKKHQRFLKDFKGQSCKVYWIYGVSGIGKTKLVREILEKQHPEDFCISGSQRDHFQEY KGQKFIVINDLRPNDYDYGQLLTLLDPWEIDKMAPARYHDRYLNARAIYITTPYDPLSFY LECNIANQVIDSFEQLKRRIIPLQLTKSNTNKVKNDLITDDKLSEAIWKIKSQKNTSHAN RDKSND >gi|256541347|gb|ACPV01000127.1| GENE 47 35664 - 36422 524 252 aa, chain - ## HITS:1 COG:BS_yulB KEGG:ns NR:ns ## COG: BS_yulB COG1349 # Protein_GI_number: 16080173 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 7 251 2 254 258 99 29.0 6e-21 MKNSIQVIKKRRKQIIDLLNHTREISISELSKKMKVSEMTIRRDCDYLSKMGKISKKRGV ISLVAPKEIPLSQPVSYIKQSLGKEAARYIHDGDIVFINSSSTAFDAIPHLLTKDIIIVT NNGYAGNFENTKSKVILTGGEIHHKLIMSGDLATKAFLSLRANYAIIGCAGISINQGIST PVMEEAEVNKTIIQQSQKVIVVADYSKFNKFSNFIIGTIKDIDLLITDTFVENSVINEFI KAGVNVIQVPLK >gi|256541347|gb|ACPV01000127.1| GENE 48 36693 - 37766 1404 357 aa, chain + ## HITS:1 COG:STM4382 KEGG:ns NR:ns ## COG: STM4382 COG2220 # Protein_GI_number: 16767628 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Salmonella typhimurium LT2 # 6 357 3 354 354 437 57.0 1e-122 MSAPKKIEDVNFKTFAENNFPEWGTFLNEQIADKQVPEKSIAMWWLGCMGVWIKTHEGTN VAIDMWNGTGKHTHGDGKMRKGHQMMRMTGGEALQPNLRNKPYVIDPFALRDLDALCVTH THHDHLDIYTAACVNKYCPDAKFIGPQGVVDEWIEWGVPKEKTIVVKPGDEVKVGAVTIK AMEAFDRTEFVTEDDPNKKLAGTMPIEMAKVAVNYLVKTSGGNVYHSGDSHYSNTYVKHG NENEIDVTLCAYGENPRGITDKLDDSQVLRMGEALKTKVIIPMHYDIWTNFYSDPKDILA LWDRKKYRLQYKFKPYIWQVGGEFDYPQDKDNFEYMYDRGFHDAFKNDPDLPFPEML >gi|256541347|gb|ACPV01000127.1| GENE 49 37836 - 38294 692 152 aa, chain + ## HITS:1 COG:SP2131_2 KEGG:ns NR:ns ## COG: SP2131_2 COG1762 # Protein_GI_number: 15901945 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Streptococcus pneumoniae TIGR4 # 21 151 20 148 148 91 37.0 6e-19 MLRYFLENNLLNITDEHPETWEEAIRVAGKVMKQDKLVTDDYIDSVIADVKKYGPYIVIV PGVAMPHSKADSEGVLGTGIGLTILPEPVSFDESDPDKSAKLFFMLAAKDNNTHVKNIAH LSDMLMEDNMIDDLSKVKNLDDYKAVMKKHNM >gi|256541347|gb|ACPV01000127.1| GENE 50 38316 - 39803 1505 495 aa, chain + ## HITS:1 COG:SP2038 KEGG:ns NR:ns ## COG: SP2038 COG3037 # Protein_GI_number: 15901859 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 4 479 1 477 485 399 47.0 1e-111 MAILNILSKIWDYFATNILQQPAFMIGFIVLLGYILEKKKWYEVLSGFLKATVGYFILSA GSVGLINTFRPILVGLKDRFHLNAMVTDPYFGQNAVTAGIMKEFGRSFADTMLLLLFAYI INIVLVRFSKYTKLRAVFTTGNVQVQQAATAFWLILFCFPKLGHLPILIVMSIILGLYWA VGSNLTVDITQELTDGAGFAIAHQQMFGIFIFAKLSEFLENRAKKKGKKEARRLEDVKLP GFMSIFNDNMVSTSILMLIFIGAILVVLGPDYLVKAKFMQPGQSFIFYILQTSLQFAVFL AILQLGVRTFVNELTESFTGISDKWLPGSVPGIDVAATLGFGSPNAGTIGFLFGALGQFT MIILLLIFHLPTIVIAGFIPLFFDNAAIGLYSNNRGGFKYAMIMPFISGLIQIGGSALIA TWVGMAKYGGYIGMFDWATVWPFFTVLMKFLGFVGIALVIIILVMIPQLQYRADKKGYFM ITEDYEGWKKLHGKE >gi|256541347|gb|ACPV01000127.1| GENE 51 39816 - 40118 483 100 aa, chain + ## HITS:1 COG:no KEGG:EF1128 NR:ns ## KEGG: EF1128 # Name: sgaB # Def: phosphotransferase enzyme II, B compnent SgaB # Organism: E.faecalis # Pathway: Ascorbate and aldarate metabolism [PATH:efa00053]; Phosphotransferase system (PTS) [PATH:efa02060] # 1 93 1 93 99 94 51.0 9e-19 MKIMSACANGSGTSLMLSRTARKAMEQLGYEITVSDHTSVSEARGTARNYDVVFTSLPFV NMFDEVKQKGGEVIGVKNVMSVPEVKEKIEASDIPNKFKK >gi|256541347|gb|ACPV01000127.1| GENE 52 40137 - 40775 663 212 aa, chain + ## HITS:1 COG:SPy0177 KEGG:ns NR:ns ## COG: SPy0177 COG0269 # Protein_GI_number: 15674382 # Func_class: G Carbohydrate transport and metabolism # Function: 3-hexulose-6-phosphate synthase and related proteins # Organism: Streptococcus pyogenes M1 GAS # 3 212 4 220 220 213 53.0 3e-55 MALPMLQVALDCESTAEALNVARQVMDQVDVLETGTILCYQDGVKAVSALRAVGPDKIVL ADVKCADAGTKFGKASKDAGADWMTCINAATVPTMVNARKEIEVQVELYEGWDNKERMQE WLNNGIDQVVYHQSRDAKFAGQKWGEKDVANVKTLIDMGFKVSVTGGVHPEVLKLFKDLP VYCFIAGRDIRNAEDPHARAKQYKDEIKRIWG >gi|256541347|gb|ACPV01000127.1| GENE 53 40888 - 41769 967 293 aa, chain + ## HITS:1 COG:SPy0178 KEGG:ns NR:ns ## COG: SPy0178 COG3623 # Protein_GI_number: 15674383 # Func_class: G Carbohydrate transport and metabolism # Function: Putative L-xylulose-5-phosphate 3-epimerase # Organism: Streptococcus pyogenes M1 GAS # 6 287 5 286 287 282 48.0 6e-76 MTVNSLGIYEKALPQDLSWKEKFNLVKKLGFNFLEFSVDESDARLARLDWTKEQRKEFRD LMWDTDIRINNLMLSGHRRFPLGSKDPETRKKSLEMCQKAVDLCVDLGIHNIQMAGYDVY YEEKSENSRELYVENLAKCVHMAAKKNIMLSIETMDDPFITNIADIKQYKKQVRSPWLQA YPDLGNLSAWPQNDPAKDLENGIGNIVAIHLKDTLAVTDDFEGKFRDVPFGEGCVDFEGL LRELVRLDYNGSFTIEMWPGDNGDDDPVAEVKEAKAFFDKIFKKVGIEQEPVD >gi|256541347|gb|ACPV01000127.1| GENE 54 41785 - 42513 886 242 aa, chain + ## HITS:1 COG:CAC1341 KEGG:ns NR:ns ## COG: CAC1341 COG0235 # Protein_GI_number: 15894620 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Clostridium acetobutylicum # 1 230 1 230 233 277 60.0 1e-74 MLEDLKKEVYEANMQLPKLNLVTFTWGNVSGIDREKGLFVIKPSGVPYEELTPEDMVVVN LKGEVVEGTRNPSSDTPTHTYLYNHFPKIGGIVHTHSPWAVSFAAAKMDIPALNTTHADT FYTDVPAADALTKEQIEEDYEGNTGVTIVKTFKERGFDYEATPGALVSQHGPFTWGETPA KAVYNAKVLEVVAEEDYHTLQLTRANCHLPQYLLDKHYYRKHGKNAYYGQNNAHSKDHAK RA >gi|256541347|gb|ACPV01000127.1| GENE 55 42530 - 43174 546 214 aa, chain + ## HITS:1 COG:SA0530 KEGG:ns NR:ns ## COG: SA0530 COG0546 # Protein_GI_number: 15926250 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Staphylococcus aureus N315 # 2 213 3 214 215 177 40.0 1e-44 MLENYFFDFDKTLASSGKASLIATKQAFKLNNLDEPDDDQILDFMGIPADVSFLKMANRE LSESDAKKLVDTYRNIYGKYEKENTHLYPGMRDVLEDLQQKGKNLFVVSSKSHDILKRNL DNLKITQYFKDFVGCDEVQHYKPAPDGILILLDRYNLNNKQSVMVGDARYDLQMGKSASV KTCGAAWDAFSVDSLKNEHPDYLLFHVAELKNIE >gi|256541347|gb|ACPV01000127.1| GENE 56 43297 - 45693 2648 798 aa, chain + ## HITS:1 COG:CAC1343 KEGG:ns NR:ns ## COG: CAC1343 COG3957 # Protein_GI_number: 15894622 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoketolase # Organism: Clostridium acetobutylicum # 7 794 15 794 796 934 57.0 0 MAVDYDSKEYLKSVDAYWRAANYLSVGQLFLMKAPLLKTPLVAEDVKPKPIGHWGTIAPQ NFIYAHLNRVLKKYDLDMFYIEGSGHGGQVMVSNSYLDGSYTERYPEITQDEKGMAKLFK RFSFPGGVASHAAPETPGSIHEGGELGYSLSHGTGAILDNPDVIAAVEIGDGESETGPLT ASWFSNKFINPINDGAVLPILQINGFKISNPTIVSRMSDKELTEYFRGMGWDPHFVSVFK GGRFDGEKDPMQVHEEMAKTMDEVIEEIKAIQKHARENNDATLPHWPMIIFQCPKGWTGP KKDLDGNPIENSFRAHQIPIPVAQDDMEHKEMLEKWLKSYKPEELFNEDGSPKKIVTENT AKGDHRMAMNPVTNGGKNPKRLNLPDYRKYALKFKPGQMEAQDMVEWAKYLSEVADLNPD TFRGFGPDESKSNRLFALLDDQKRQWEPEIHEPNDENLAPSGRVIDSQLSEHQDEGFLEG YVLTGRHGFFATYEAFGRVVDSMLTQHMKWLRKAKEQYWRHDYPSLNFVATSTVFQQDHN GYTHQDPGILTHLYEKNRPDLVHEYLPSDTNTLLAVGDKALKDRECINVLVTSKQPRPQW FSIEEATKLADKGLSYIDWASTDQGYKPDIVFASTETEPTLESLAAIDILHKRFPDLKIR YINVVDVMKLMSPKDNKNAVSDKEFDRLFPSDIPVIFAWHGYKTMMESIWFARNHHNIHI HCYEENGDITTPFDMRVLNHLDRFDLAKDAVESIPSLAGKNPDFINEMDDLLAKHHQYIR DNGKDIPEVTEWKWTGLK >gi|256541347|gb|ACPV01000127.1| GENE 57 45999 - 46205 192 68 aa, chain - ## HITS:1 COG:BH0682 KEGG:ns NR:ns ## COG: BH0682 COG3666 # Protein_GI_number: 15613245 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 18 61 129 172 522 60 61.0 8e-10 MPMNWLRRALSTLPICWLINEGAVFIDGTKIEADANRYTFVWRKAVEKYHDKLKGQAVEA YVRTGTIS >gi|256541347|gb|ACPV01000127.1| GENE 58 46196 - 46375 116 59 aa, chain - ## HITS:1 COG:no KEGG:LBA1907 NR:ns ## KEGG: LBA1907 # Name: not_defined # Def: transposase # Organism: L.acidophilus # Pathway: not_defined # 1 42 1 42 502 75 83.0 5e-13 MYKNHITGQTALTLNLDFTIPSNHLANAISWIVDSIPEAILLYTLLKQVDQYTTQQSCQ >gi|256541347|gb|ACPV01000127.1| GENE 59 46449 - 46898 441 149 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00333 NR:ns ## KEGG: LCRIS_00333 # Name: not_defined # Def: acetyltransferase, GNAT family # Organism: L.crispatus # Pathway: not_defined # 2 149 1 148 149 212 71.0 4e-54 MLNFRSYEDADFEKLCNIHDQARKQELKFANLEAAFIPFKIASKKEQLFEDYQVYVATKE NKVVGFVGFNEEELGWLYVDPKVQGQGIGSKLIDFTLENSTRPFYLEVLEGNPAQKLYLK KGFITIKHESGKMPGNESFSVEVDLMEYK >gi|256541347|gb|ACPV01000127.1| GENE 60 47027 - 47317 122 96 aa, chain + ## HITS:1 COG:MJ0272 KEGG:ns NR:ns ## COG: MJ0272 COG1476 # Protein_GI_number: 15668446 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Methanococcus jannaschii # 4 63 14 73 79 65 51.0 3e-11 MMIINNKIKEYRKKHQLTQRELAEKVGVTERTIISLEKGRYKPSIVLAYKLVQFFETDIE TLFCLNEYVKNEQAKGRNAYNSFCDSISHTALRINL >gi|256541347|gb|ACPV01000127.1| GENE 61 47238 - 47678 262 146 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227879299|ref|ZP_03997166.1| ## NR: gi|227879299|ref|ZP_03997166.1| hypothetical protein HMPREF0506_2167 [Lactobacillus crispatus JV-V01] # 1 146 1 146 146 231 100.0 1e-59 MSKPKEGMLTILFAILSVIQLLELIYDVANRKSVNYIQDVIWLILGICLTVGYFYSTKYI GIAKIEEDDERDKFIQTKTNNQAFNILQWVLFVLGAVTIIIDVNLGQMGLDSRAMVIIVV GVVLIFLWAFSWILQLILMIINYFCN >gi|256541347|gb|ACPV01000127.1| GENE 62 47866 - 48040 176 58 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01522 NR:ns ## KEGG: LCRIS_01522 # Name: not_defined # Def: response regulator of the LytR/AlgR family # Organism: L.crispatus # Pathway: not_defined # 1 58 1 58 144 67 53.0 1e-10 MKVKFNIDNQLAGESAEFWLKKMTNKFSQLGKELSGEQDTIWCSYDDEIIPVKFENIY Prediction of potential genes in microbial genomes Time: Wed May 25 05:57:11 2011 Seq name: gi|256541346|gb|ACPV01000128.1| Lactobacillus crispatus 125-2-CHN cont1.128, whole genome shotgun sequence Length of sequence - 8860 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 7, operones - 4 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 23 - 82 4.8 1 1 Tu 1 . + CDS 270 - 692 280 ## LJ1643 hypothetical protein + Term 704 - 742 2.1 - Term 686 - 736 4.2 2 2 Op 1 . - CDS 752 - 1336 739 ## COG0693 Putative intracellular protease/amidase 3 2 Op 2 . - CDS 1374 - 2033 755 ## LCRIS_00335 hypothetical protein - Prom 2060 - 2119 4.7 + Prom 2001 - 2060 7.8 4 3 Op 1 . + CDS 2108 - 2866 733 ## COG0730 Predicted permeases 5 3 Op 2 . + CDS 2908 - 3588 682 ## COG0406 Fructose-2,6-bisphosphatase + Term 3591 - 3625 2.0 6 4 Op 1 . + CDS 3649 - 4548 945 ## COG1230 Co/Zn/Cd efflux system component 7 4 Op 2 . + CDS 4557 - 4739 242 ## LCRIS_00339 hypothetical protein 8 4 Op 3 . + CDS 4751 - 5431 569 ## COG0588 Phosphoglycerate mutase 1 + Term 5476 - 5516 4.1 + Prom 5449 - 5508 6.5 9 5 Tu 1 . + CDS 5542 - 6477 898 ## COG4639 Predicted kinase + Term 6482 - 6525 7.8 - Term 6468 - 6513 8.2 10 6 Tu 1 . - CDS 6541 - 6945 621 ## lhv_0361 hypothetical protein - Prom 6987 - 7046 4.8 - Term 7034 - 7070 5.0 11 7 Op 1 . - CDS 7085 - 8434 1846 ## COG3579 Aminopeptidase C 12 7 Op 2 . - CDS 8503 - 8802 291 ## LCRIS_00345 hypothetical protein Predicted protein(s) >gi|256541346|gb|ACPV01000128.1| GENE 1 270 - 692 280 140 aa, chain + ## HITS:1 COG:no KEGG:LJ1643 NR:ns ## KEGG: LJ1643 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 139 1 140 143 99 43.0 5e-20 MKRMESFLVSGISGMGIGLTWYSIVTLFQTGTNWKNAQIPFTSLLFYLIVSFVMGAFFNL TGLIFEQTQWSLRKQIIVNFFVSYVAFFAFELVINDLALSVHFFLVITGVFVLMYLLAYG LYFLQLLRDVKQINQKLKEK >gi|256541346|gb|ACPV01000128.1| GENE 2 752 - 1336 739 194 aa, chain - ## HITS:1 COG:SP0804 KEGG:ns NR:ns ## COG: SP0804 COG0693 # Protein_GI_number: 15900697 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Streptococcus pneumoniae TIGR4 # 1 183 1 176 184 168 48.0 5e-42 MTKVAVVFADGCEEVEGLSVVDVLRRLNVECDMVGLTSKDVDGDHHIKLTCDKVVDNSLL DYDLVAFPGGMTGSANLRDNEKLRDLMVKRHESGKWDAAMCAAPRALARYGVLKDADFTC YPGIEEECLKDDPSAHFSERITVIDNEHKILTSRGPATAWAFAYAIAEALGVDTKQLKHG MLYDYLADNIQDSL >gi|256541346|gb|ACPV01000128.1| GENE 3 1374 - 2033 755 219 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00335 NR:ns ## KEGG: LCRIS_00335 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 219 1 219 219 372 91.0 1e-102 MATFETLIFIPEGSLLNEKLAEKTALRQTLKHYGLDWGPAERLRYTSLAKEFKTLSSDKQ INLSLTTFLKEDLAQTRAIFDDAMKDQTRLVKGAIDFIDEVSGNLHLILLAKEKRSQIEP RLAPTELLSSFDRAYFADDFKEKLPSKNIFFKILKDNPDLDPDTVLVIGTNLDEEIQGAE NANLKSLWLAPKKDKIPIAPHPTLHLSKLADLSFYLNLI >gi|256541346|gb|ACPV01000128.1| GENE 4 2108 - 2866 733 252 aa, chain + ## HITS:1 COG:Cgl2018 KEGG:ns NR:ns ## COG: Cgl2018 COG0730 # Protein_GI_number: 19553268 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Corynebacterium glutamicum # 12 234 17 255 269 95 30.0 1e-19 MTIWTIIFLLLGGVAGGLLSSVASMASLASYPVLLAVGIPPVFANVTNDAALIWTSIGST VSSTKELKGHWKQVWFYTIFTVVGSILGCILLLSFPPKIFEKAVPFFIAFSGLMIIVSGK HHSLNTKAQPTWLKIIYFLALLIMGMYTGYFGAAGGVIVLVLLTYITNDKFIVINAIKNV ICGFANLVALIIFMFTSHIYWLQAIPLAIGMFIGGYIGPAILRRVPEKPVRIFIASLAFI QAGYFFYTAYLQ >gi|256541346|gb|ACPV01000128.1| GENE 5 2908 - 3588 682 226 aa, chain + ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 5 220 7 216 224 102 32.0 5e-22 MATEVYLVRHGETMFNQLDKVQGWCDSPLTVKGINDLKRTAKALSQVHFDNMYSSDLKRA IDTVHLMKDANVVSDIGKIKKLPEFREVFFGTFEGDDINQTWEQVALAAGIGHEDDVTKI INQVGLRKFRAATKKADPRHLAENQDELDERMVRAIDVLRDLTKDEQRVLLVSHGDFIKT LSIKYWNKSNGKNDIVFPNNGSVTRGILYDDGSFEIVDYNVDAEEL >gi|256541346|gb|ACPV01000128.1| GENE 6 3649 - 4548 945 299 aa, chain + ## HITS:1 COG:PH0896 KEGG:ns NR:ns ## COG: PH0896 COG1230 # Protein_GI_number: 14590752 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Pyrococcus horikoshii # 16 290 17 289 295 236 44.0 5e-62 MNKDHTTKRYVFVTLLNVVITIAEFIGGIFSGSLALLSDAVHNLSDVGAIILSFVAHLIS RKSRNQFKTFGYERAETLAAFTNGVILIVISVVLFIEAIQRFWKPEHIHGGIMLIVSIIG LAANIISMLAMHSDSKANLNVRSTFIHMLSDALSSVAVVIGAIFIYFWNVTWLDPVLTIL VSIFVLHEAYEITMKAANVLMESNPDIDLNEVNKIVLSFPIVQNIHHVHVWRYSDDFIMM DAHINVAPGLRADELEQLYQDIGQELQKELGINHITLQAECERGRKDKMIVPGHGINED >gi|256541346|gb|ACPV01000128.1| GENE 7 4557 - 4739 242 60 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00339 NR:ns ## KEGG: LCRIS_00339 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 60 1 60 60 82 100.0 4e-15 MFNVNIFTAIIVLIMGIYDMSYAFNRRKQPTNKGGIRAFMALGIIFTIAGIVMIVRVLMK >gi|256541346|gb|ACPV01000128.1| GENE 8 4751 - 5431 569 226 aa, chain + ## HITS:1 COG:SA2204 KEGG:ns NR:ns ## COG: SA2204 COG0588 # Protein_GI_number: 15927994 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Staphylococcus aureus N315 # 1 224 1 228 228 209 44.0 5e-54 MAKLVLVRHGESVANAANVYTGWNDVPLTKKGEEQAEKAGELIKTISDFAPTHIHTSVLS RAIVTANIVADVCNLLWLPMTKTWRLNERHYGALRGLNKDISRKVFGVEQVLLWRRSFDS VPPKQGSPMIDRRYKHFDQHLMPRAESLHQTQKRLMPYYYDHIASRLMNGEDQLIVAHGS SLRALIKKLEQINDHDIVKLEVPNAEPIVYTMDEHLKIINKQILRK >gi|256541346|gb|ACPV01000128.1| GENE 9 5542 - 6477 898 311 aa, chain + ## HITS:1 COG:FN1603_1 KEGG:ns NR:ns ## COG: FN1603_1 COG4639 # Protein_GI_number: 19704924 # Func_class: R General function prediction only # Function: Predicted kinase # Organism: Fusobacterium nucleatum # 1 183 1 174 174 80 28.0 3e-15 MRKLFLLRGAPGSGKSSFIARHHLNPYAISRDQIRLLLADLTVYYQEDADVLHQVIPRHV TVRTEQMVDHLVEHKMEYGETVIVDGTHIVPSAIEHFKPWVDKYHYECFVVDLMQHTTLE SLLKRNQTRMHYDWVKPEVVKQMYRSYEAHPEVPYWAHKVVPNQMDHALSQRETNLDRYA HVIAVPDMVDEEDFPHVHISNFYFSFNDKFTEKYGTYRNVVSIAKTEDEAVKQFKLPYFV FKFHHKHFLISAYPIRNEMLDPIRKVKGVWTYSTGLYNVADFVKEFPENKKQHVHQFNLS KLDPTRLLHIW >gi|256541346|gb|ACPV01000128.1| GENE 10 6541 - 6945 621 134 aa, chain - ## HITS:1 COG:no KEGG:lhv_0361 NR:ns ## KEGG: lhv_0361 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 21 134 2 115 115 142 92.0 5e-33 MTDYSKRQLKALNRISKKIEDAESHLARIEDSVPDRRHRTAQHETIKDIKSILKHARKVG EYDAKIDAKADENEYVYVEDEEGVIKDLEKEFKDLDDRLSKLTDVDGYDIKRYREEHHSL EKAKEVLAKAGKLK >gi|256541346|gb|ACPV01000128.1| GENE 11 7085 - 8434 1846 449 aa, chain - ## HITS:1 COG:SPy1651 KEGG:ns NR:ns ## COG: SPy1651 COG3579 # Protein_GI_number: 15675522 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pyogenes M1 GAS # 23 446 22 443 445 462 52.0 1e-130 MVKEINNDTINKFEQDLANHPVFDVASHAAQENGIYKASQNLQTKIDLDPTFSIEIDTGN PADQKQSGRCWMFSALNTMRHPLQKKFKLKDFELSQNYTNFWDKFEKSNWFFENVIATAD KDLGDRKVSFLFATPQQDGGQWDMLCGIIEKYGIVPKSVYPETANATNSSALNDTLNTLL RKDGLELRKLVQDGKSEDEVQARKEEMLNDVFRILATSLGVPPKKFNFEYRDDDKNYHID RDITPKEFFDKYVGMDLANHISTINAPTNDKPFHKVFSVEYLGNVEGGRQVRHLNLKVDE MKDLIIKQLKSGEVVWFGSNVVKDSERRAGLLDTNLYHRDQLFDADFTMSKADMLDSGES MMDHAMVITGVDIVDGKPTKWKIENSWGEKPGFKGYFVMSDSWFNSFVYQAVINKKFLPE DLKKAYDEGKDNPIQLLPWDPMGALAFKY >gi|256541346|gb|ACPV01000128.1| GENE 12 8503 - 8802 291 99 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00345 NR:ns ## KEGG: LCRIS_00345 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 99 1 99 99 170 95.0 1e-41 MNKQDTHQIFTIKNEEDILLSSVTLDKIARKDSNVWIMNHFFINPQLNSKDLLEKQMQKV WQLAQETNLPIWPLDPMIIDYFTQDPQFHKIWYHRPFTR Prediction of potential genes in microbial genomes Time: Wed May 25 05:57:31 2011 Seq name: gi|256541345|gb|ACPV01000129.1| Lactobacillus crispatus 125-2-CHN cont1.129, whole genome shotgun sequence Length of sequence - 18349 bp Number of predicted genes - 21, with homology - 21 Number of transcription units - 8, operones - 6 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 + CDS 80 - 631 613 ## COG0756 dUTPase 2 1 Op 2 . + CDS 631 - 2007 1157 ## COG1066 Predicted ATP-dependent serine protease 3 1 Op 3 1/0.000 + CDS 2085 - 3584 1525 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases + Term 3602 - 3637 3.4 + Prom 3592 - 3651 9.9 4 2 Op 1 8/0.000 + CDS 3753 - 5108 1233 ## COG0215 Cysteinyl-tRNA synthetase 5 2 Op 2 7/0.000 + CDS 5101 - 5544 297 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 6 2 Op 3 . + CDS 5531 - 6286 564 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 + Term 6290 - 6335 4.2 7 3 Op 1 . + CDS 6420 - 6965 455 ## LCRIS_00352 DNA-directed RNA polymerase sigma factor, sigma H 8 3 Op 2 . + CDS 7029 - 7247 400 ## LCRIS_00353 hypothetical protein + Term 7305 - 7342 3.8 + Prom 7285 - 7344 4.8 9 4 Tu 1 . + CDS 7364 - 8872 1312 ## COG1070 Sugar (pentulose and hexulose) kinases + Term 8882 - 8906 -1.0 - Term 8862 - 8902 3.8 10 5 Tu 1 . - CDS 8919 - 10589 2066 ## COG1154 Deoxyxylulose-5-phosphate synthase - Prom 10668 - 10727 7.2 + Prom 10754 - 10813 7.7 11 6 Op 1 . + CDS 10850 - 10999 258 ## PROTEIN SUPPORTED gi|227879326|ref|ZP_03997191.1| ribosomal protein L33 12 6 Op 2 . + CDS 11009 - 11179 196 ## LCRIS_00357 preprotein translocase, SecE subunit + Term 11181 - 11220 -0.2 + Prom 11185 - 11244 3.8 13 7 Op 1 45/0.000 + CDS 11288 - 11845 794 ## COG0250 Transcription antiterminator + Prom 11857 - 11916 3.4 14 7 Op 2 55/0.000 + CDS 11970 - 12401 702 ## PROTEIN SUPPORTED gi|161506935|ref|YP_001576889.1| 50S ribosomal protein L11 15 7 Op 3 . + CDS 12479 - 13171 1163 ## PROTEIN SUPPORTED gi|227879330|ref|ZP_03997195.1| 50S ribosomal protein L1 + Term 13179 - 13230 4.0 + Prom 13200 - 13259 4.0 16 8 Op 1 39/0.000 + CDS 13291 - 14157 776 ## COG0226 ABC-type phosphate transport system, periplasmic component 17 8 Op 2 38/0.000 + CDS 14161 - 15156 1224 ## COG0573 ABC-type phosphate transport system, permease component 18 8 Op 3 41/0.000 + CDS 15158 - 16045 918 ## COG0581 ABC-type phosphate transport system, permease component 19 8 Op 4 7/0.000 + CDS 16054 - 16848 276 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 20 8 Op 5 32/0.000 + CDS 16850 - 17605 210 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 21 8 Op 6 . + CDS 17623 - 18300 731 ## COG0704 Phosphate uptake regulator + Term 18306 - 18336 -0.6 Predicted protein(s) >gi|256541345|gb|ACPV01000129.1| GENE 1 80 - 631 613 183 aa, chain + ## HITS:1 COG:L181168 KEGG:ns NR:ns ## COG: L181168 COG0756 # Protein_GI_number: 15672158 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Lactococcus lactis # 1 177 1 148 150 137 44.0 1e-32 MKTRGFEVVKKYQDQEINLPRRQTLASAGYDIEAAEDITIPSIWRLNFVRIFRLIRNGHQ LYERDYEMADQILKPLLVPTGLKAYMPEDEVLILANRSSNTFKRNLALPNGIGVIDADYY NNPNNEGEIFVQMINYGVRPLHIKKGDRIAQGIFIKYLKTDDDDPISRKRVSGFGSTNEK KGD >gi|256541345|gb|ACPV01000129.1| GENE 2 631 - 2007 1157 458 aa, chain + ## HITS:1 COG:L0303 KEGG:ns NR:ns ## COG: L0303 COG1066 # Protein_GI_number: 15674046 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Lactococcus lactis # 1 458 1 453 453 528 57.0 1e-149 MARVKTQYKCRSCGYISASYLGRCPNCGAWNQFEKETEEVQKRSTKATASRLIQKTGLNE PVKLDKIKAEKEERIVTKSEELNRVLGGGIVLGSLVLIGGDPGIGKSTLMLQIMSDLSEK YKVLYVSGEESANQIKLRADRLGVGQSNMLLYPETDMHDIREQINDVKPDFVVIDSIQTM NEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILEHMVDTVLY FEGDEHHSYRILHSVKNRFGAANEIGMFEMVNEGLREVTNPSSIFLDQRLPNSTGSAVVV SLEGTRPLLAEIQALVTPTAFGYAKRTTSGISFNKASLLLAVLEKRGNLMLQNQDVYLTA TGGIKLNEPAIDLAIAMAVASSYTDKEISPTDCFVGEVGLTGEVRRVDKIDARVKEAAKV GFKRIFIPRHNMYSGLKDHGIEVIPVSSIPQALKLVFG >gi|256541345|gb|ACPV01000129.1| GENE 3 2085 - 3584 1525 499 aa, chain + ## HITS:1 COG:L0349 KEGG:ns NR:ns ## COG: L0349 COG0008 # Protein_GI_number: 15674035 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Lactococcus lactis # 4 493 3 483 483 546 57.0 1e-155 MAKEKIRVRYAPSPTGHLHIGNARTALFNYLFARHNKGTMVLRIEDTDQKRNVKGGSKSQ MENLHWLGIDWDEGPDKGGDYGPYRQSERKEIYQKYIDQLIDEGEAYYSYKTEEELEAQR EEQRAAGVAPHYTYEYEGMTADEIKQAQDEAKAKGLKPVVRIHIPEMETYSWDDIVKGHL EFESDTIGGDFVIQKRDGMPTYNFAVVIDDHLMKITHVLRGDDHVSNTPKQLVVYEALGW EPPKFGHMTLIINSETGKKLSKRDESVLQFIEQYRDLGYLPEAMFNFITLLGWSPKGENE IFNKREFIKQFDPARLSKSPAAFDQKKLEWINNQYIKKADRDTLLDLALNNLQEASLVDE HPTPEKMEWVRQLVNIYSVQMSYTKQIVDMAKIFFEEAKDLSDEEIEEIKNDDGRGVIEE FKKQLDLIPRFTSVQIMNAIQATRKATGIKGRKLFMPIRIATTRSMVGPGIGEAMELLGK ERVLEHIDLTLKQMSANNL >gi|256541345|gb|ACPV01000129.1| GENE 4 3753 - 5108 1233 451 aa, chain + ## HITS:1 COG:SP0591 KEGG:ns NR:ns ## COG: SP0591 COG0215 # Protein_GI_number: 15900500 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 451 25 447 447 466 54.0 1e-131 MYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYKGYDVKYVSNFTDVDDKMINEARAEKTT VPKLAENFINAFLADTTALNIEPATLHPRATHEINDIITFVKSLIDNGYAYEVDGDVYYR AKKFKHYGQLSDQNIEQLEEGASEHINDTEQSRKEDPIDFALWKAQKEPDEIAWDSPWGK GRPGWHIECSVMSTKYLGDTIDIHGGGQDLEFPHHENEIAQSEAKTGKKFVNYWLHNGFV TVGKDQEKMSKSLHNFVTVHDILREVDPQVLRFFMASVQYRRQINYSAENLAQAATILDR FKNTLTNINYRLEDDTASEESAELAQAIMATNEKFEQAMDDDFNVQNALTAIYDLLPVVN ANANAARADKQELQKFKEKLASWLLVFGVDTNKLCVKNAGSNDDEIDALVKKRDEARANK DWATSDQIRDQLKEMGITIQDTPQGTRWTRD >gi|256541345|gb|ACPV01000129.1| GENE 5 5101 - 5544 297 147 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 10 137 5 133 141 119 48 2e-26 MTKIKKLTEEDVNPDTLNGQTLAYLGDAVYELIIRRHLVKGGIVKPQVLQREATHYVSAK AQAALATKMQDEEMLTDDELAAFRRGRNAKSHTKAKNTSLKTYQLSTGFEAMIGYLDLLG KNDRVADLSKWCIDTVEEDGLKNYDFK >gi|256541345|gb|ACPV01000129.1| GENE 6 5531 - 6286 564 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 3 249 4 249 255 221 45 2e-57 MTSNKDFVFGRHAGLDYLKTQSADKINKVFLQHGVQEEFANQVYSLAKKKRLVVQDVPKN KLDRLVAGGNHQGLVLAISSFEYADLNQLLDKYDAEGKEPFLLMLDSIEDPHNLGSILRS ADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWVFGTD MAGTDYREWNAQGKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNASVATGVLLY QAYNSRNPLVK >gi|256541345|gb|ACPV01000129.1| GENE 7 6420 - 6965 455 181 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00352 NR:ns ## KEGG: LCRIS_00352 # Name: not_defined # Def: DNA-directed RNA polymerase sigma factor, sigma H # Organism: L.crispatus # Pathway: not_defined # 1 181 1 181 181 343 98.0 2e-93 MINEEKLIKKVRAGDDQALEKLFHLYEPLVNSIVKQFYLHHYDRKDWDQEAMIVCYEAAL VFSPKKGKFSSLYKTKLFNHARTLVRYNMARRRQIYSQSIPLEKADIQGSVNEPCRSELS IPVDETYNNFVNSLSHVELIALLTIIGEISTEYAIDHLNIEAMKLVRARARTLQKMRKVL F >gi|256541345|gb|ACPV01000129.1| GENE 8 7029 - 7247 400 72 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00353 NR:ns ## KEGG: LCRIS_00353 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 72 1 72 72 109 100.0 3e-23 MADEIIKTALLDRHMKEAFDWSDSDMPVRDALWDYFMEKNGRDTMKTEEDMLPFLKDSDD KIEAFVNENLKK >gi|256541345|gb|ACPV01000129.1| GENE 9 7364 - 8872 1312 502 aa, chain + ## HITS:1 COG:L52019 KEGG:ns NR:ns ## COG: L52019 COG1070 # Protein_GI_number: 15674166 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Lactococcus lactis # 1 500 1 502 519 400 40.0 1e-111 MKYIIGIDIGTTATKGVLYGEDGSEVAKLAISYPLIQEEAGQAEEDPQLIFDAVQKMIYQ LSQKASGQILAISWSSQMHSLIGLGENNELLTNSITWADNRSSDVVQRAKKSGWARMIYQ QTGMPPHPMAPVYKLLWLKEEQPTLFAQVKKWISIKEYIIWGLTGKILTDTTMAAGSGMM NLKTLTWDEKILAQIGLDQVQLPTIADQQSTVGKIIPEYRAKLGLNDETQIVLGASDWYL STIGVGVLDEKDFALNVGTSGAVRVIAPKAIVDQKNRFFCYPVDAKHYLLGGPVNNGGIV FDWARKTIFGPDETAEDVLNVAQTAPAGSNGLLFHPYLGGERAPIWNAQARGSFVGLTRN HTKPQMARSVLEGIVFNLLGASQGLLDQVGQPQALRVTGGFVQSDFVRQLIADIFNLPVI VIKNEQCGTLAAMFLAKTALEDKPDLEKIKKRTAESQVYFPNPQNVAIYQELILVYRKIE HELEASYEDLAQFQDKHPQKFE >gi|256541345|gb|ACPV01000129.1| GENE 10 8919 - 10589 2066 556 aa, chain - ## HITS:1 COG:L123365 KEGG:ns NR:ns ## COG: L123365 COG1154 # Protein_GI_number: 15673655 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Deoxyxylulose-5-phosphate synthase # Organism: Lactococcus lactis # 1 553 21 575 580 546 51.0 1e-155 MEKLASEIRTLILEKDAAEGGHLGPDLGIVEATIAYHYVFDAPKDKIVWDVSHQTYPHKM LTGRALAWLDPDHYEDVTPYSNPDESPYDYYAVGHTSTSIALATGMAKARDLMGKHENIM ALIGDGSMTGGLAYEGLNNAAIEKHNLVVVVNDNQMSIDDNVGGLVTALKKLRDSNGETK ENPFTAIGFDYRYVADGNDIQSMIDAFKAVKNVDHPILLHINTLKGKGYQPAIDNEEAHH WVMPFDLKTDKTTVAMPEGPTASSIALDVLEDHINNGEKIMAINAAIPGVFGLDRIKNKY PENYHDVGIAEQESVAFAAGMAKEGATPVLFENSTFLQRAFDQLSHDVAANDLPVVMMVA GGGISGTSKTHLGVFDQVMISNLPNWIYLAPTNLAEEKAMMEWAIKQKKHPVAIKMPTKD VPEGKEITAVDYSEIKYDIKPGKDVAVLALGDMYDMLGKKVAEKTGASLVNPVSANILDT AALDKLTQENKVIVTIEDNILDGGFGEKVASYLGDKDIKVLNYGQKRVYTDQVPLKEILK DNRMTVDQIVEDIENA >gi|256541345|gb|ACPV01000129.1| GENE 11 10850 - 10999 258 49 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879326|ref|ZP_03997191.1| ribosomal protein L33 [Lactobacillus crispatus JV-V01] # 1 49 1 49 49 103 100 6e-22 MAVKKAALACSVCGSRNYSITASKNRTQRLELQKFCKHCGKKTLHKETR >gi|256541345|gb|ACPV01000129.1| GENE 12 11009 - 11179 196 56 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00357 NR:ns ## KEGG: LCRIS_00357 # Name: secE # Def: preprotein translocase, SecE subunit # Organism: L.crispatus # Pathway: Protein export [PATH:lcr03060]; Bacterial secretion system [PATH:lcr03070] # 1 56 1 56 56 98 100.0 9e-20 MIKFFKSVGHEMKLVKWPSAKQNRRDTATVITSSILFAAYLGALDWLFTWLTQRLM >gi|256541345|gb|ACPV01000129.1| GENE 13 11288 - 11845 794 185 aa, chain + ## HITS:1 COG:BH0118 KEGG:ns NR:ns ## COG: BH0118 COG0250 # Protein_GI_number: 15612681 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Bacillus halodurans # 6 181 2 178 178 193 56.0 1e-49 MVETAQKKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEI EEKIFPGYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDEEVTRLLKNQGQP AKKPVVNFDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKK LDENE >gi|256541345|gb|ACPV01000129.1| GENE 14 11970 - 12401 702 143 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161506935|ref|YP_001576889.1| 50S ribosomal protein L11 [Lactobacillus helveticus DPC 4571] # 1 143 1 143 143 275 98 2e-73 MTVAKKVINVVKLQIPAGAATPAPPVGPALGQAGINIVGFTKDFNARTADQKGMIIPVVI TVYEDRSFEFITKTPPAPVLLKQAAKIQKASGEPNTKKVGKVTKDQVKEIAETKMKDLNA ADIEAAMRMVEGTARSMGIEVED >gi|256541345|gb|ACPV01000129.1| GENE 15 12479 - 13171 1163 230 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879330|ref|ZP_03997195.1| 50S ribosomal protein L1 [Lactobacillus crispatus JV-V01] # 1 230 1 230 230 452 100 1e-127 MPKHGKKYLDAAKKVDSNKLYSVAEAMKLVKETSYANFDATVDVAYNLSVDPKQADQQIR GSIVLPNGTGKTQTVVVFAEGPQADQAKAAGADFVGSDDLVEKIQGGWLDFDVVVATPMM MAKVGRLGRILGPKGLMPNPKTGTVTMDIEKAVKNVKAGQVEYRVDRQAAIHTPIGKVSF TEDQLVENFDALRDVILRARPASAKGQYIKSVAVSATFGPGIKLDPLNLD >gi|256541345|gb|ACPV01000129.1| GENE 16 13291 - 14157 776 288 aa, chain + ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 1 286 1 301 302 281 50.0 1e-75 MKKHSIGKLVIMLVLMLAFVTGCANNGSKITIVGSSAMQLLAEQAGNDYRLSHQDSNIVV QGGGSGTGLSQVQAGAVQIGTSDVFAETQKGIDAKKLRDYKIAVVGIVPIVNKGVGVKNV SQKQLKQIFTGKLTNWKQLGGKNEAITVINRSKGSGTRSAFEDIILQGTKPVKSQEQDSN GAVKKIVNSTPGTISYLSFPYAHDTNIQKLSINGVKPTNKNITTNKWNIWCYEHMYTKGK PNKQTKAFINYMLGEKVQKDLVPKIGYLSINEMKVTRNSKNQVTQIGK >gi|256541345|gb|ACPV01000129.1| GENE 17 14161 - 15156 1224 331 aa, chain + ## HITS:1 COG:SPy1244 KEGG:ns NR:ns ## COG: SPy1244 COG0573 # Protein_GI_number: 15675204 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 37 331 9 307 311 299 58.0 6e-81 MDKKDKLKEVVDQAIASQHVPHVKLKKMGPTSVDIDKLTKPSKETHQEYWGKGLTYLAIV LIIVLVVSIIGFVGYHGLATFVSDHVNVIHFLTSTDWDPGEGKNHVGAAVMIVTSFLVTL LAALVATPFAIAIALYMTEYSSKKGANFLQSVTELLVGIPSVVYGFLGLTIIVPVIRKLF GGTGFGILAATLVLFVMVLPTITSLTVDSLKAVPSHFRKASMALGSTHWQTIYHVVLRVA TPRILTAVIFGMARAFGEALAVQMVIGNAVLMPYNLVSPSATLTSQLTSQMGNTVMGTLP NNALWSLALLLLIMSLVFNFLVKLIGKKGQK >gi|256541345|gb|ACPV01000129.1| GENE 18 15158 - 16045 918 295 aa, chain + ## HITS:1 COG:SPy1243 KEGG:ns NR:ns ## COG: SPy1243 COG0581 # Protein_GI_number: 15675203 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 295 1 295 295 349 62.0 4e-96 MDAKKKDKLATAIIYILVGIVVLILAGILGDILITGIPHLSWRFLSSEASSYQAGGGVRD QLFNSIYLLILTTIISLPIALGAAIYLAEYAKDNWVTNLIRTTIQILSSLPSIVVGLFGY LLFVVQFGFGFSIISGALALTFFNLPILTSNIEEAIKGVPQDQREAGLALGLSNWKTIRG IVLPAALPGILTGIILSAGRIFGEAAALIYTAGQSGSTVNYADWNPFSPTSPLNVMRPAE TLAVHIWKVNTEGIIPDATIVSAATSALLVIVVIVFNLGARYLGNKLYRKLTAAK >gi|256541345|gb|ACPV01000129.1| GENE 19 16054 - 16848 276 264 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 30 251 12 231 245 110 35 5e-24 MQDLKPSYIKTFANDDLELSTEDLSVLYGGKVQKLFDASLQFKKNTITALIGASGSGKST FLRSLNRMNDRVATVNGKIWFHGLDVNKPNINVYELRKNIGMVFQRPNPFPKSIRENIVY ALKADGHKDRAELDRVVEESLRAAALWDEVKDKLDKSALALSGGQQQRLCIARALAVKPE ILLLDEPASALDPVSTSKLEDTLKQLRSKYTMIMVTHNMQQASRISDYTAFFHLGHAIEY NSTAEIFTNPKGKITENYIQGSFG >gi|256541345|gb|ACPV01000129.1| GENE 20 16850 - 17605 210 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 226 1 216 311 85 28 2e-16 MTTIISAKDVHLSYGNYEALHGISLDFKKKELTALIGPSGCGKSTFLRCLNRMNDDIENI KITGEIKFEGQDIYNSKMDLVSLRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELI DQRVEESLKQAAIWKETKDNLTRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDP ISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKKQ ITSDYLNGRFG >gi|256541345|gb|ACPV01000129.1| GENE 21 17623 - 18300 731 225 aa, chain + ## HITS:1 COG:SPy1240 KEGG:ns NR:ns ## COG: SPy1240 COG0704 # Protein_GI_number: 15675200 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Streptococcus pyogenes M1 GAS # 5 216 6 217 217 159 41.0 4e-39 MHEIFLDELKKLNTQFMEMGVLVNDDIDHATRAFVDHDKKTAQSMVDDEEKIPTESINIQ KQALKLMALQQPVATDFRVVISILKATTDLERIGENAMSIALETIRVKGNPRIPEVEEII SNMTHNVRHMLIQVLTAYVQDDEKMAREVASRDSMIDHDYVRARQLIVDGIEDDPSRAMA SSSYFVVTRLLERIGDHIVNLASWVVYKTTGELEELSNSTESETI Prediction of potential genes in microbial genomes Time: Wed May 25 05:57:41 2011 Seq name: gi|256541344|gb|ACPV01000130.1| Lactobacillus crispatus 125-2-CHN cont1.130, whole genome shotgun sequence Length of sequence - 3293 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 4, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 7 - 285 288 ## LCRIS_00369 putative protein without homology + Term 409 - 443 4.0 + Prom 287 - 346 6.4 2 2 Op 1 47/0.000 + CDS 489 - 1001 828 ## PROTEIN SUPPORTED gi|227879340|ref|ZP_03997204.1| ribosomal protein L10 3 2 Op 2 . + CDS 1054 - 1416 578 ## PROTEIN SUPPORTED gi|227879341|ref|ZP_03997205.1| ribosomal protein L7/L12 + Term 1440 - 1486 10.5 4 3 Op 1 . + CDS 1493 - 2335 641 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component 5 3 Op 2 . + CDS 2341 - 2961 647 ## COG2813 16S RNA G1207 methylase RsmC + Prom 2995 - 3054 8.0 6 4 Tu 1 . + CDS 3089 - 3271 279 ## LCRIS_00374 putative protein without homology Predicted protein(s) >gi|256541344|gb|ACPV01000130.1| GENE 1 7 - 285 288 92 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00369 NR:ns ## KEGG: LCRIS_00369 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 92 1 92 92 139 97.0 3e-32 MNISKTVLALYQTIIGEKQKRLIKTVDAYLDINYGDKVYQIIDQVKERNIPILSFGDIAD QNNTYSNYTVFGNDQVDEMVDKINEIINNQNK >gi|256541344|gb|ACPV01000130.1| GENE 2 489 - 1001 828 170 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879340|ref|ZP_03997204.1| ribosomal protein L10 [Lactobacillus crispatus JV-V01] # 1 170 1 170 170 323 99 1e-88 MSKAAIAEKEKFVDAFAEELKAAKAILVINYLGLTVEEVTNMRKELRDNDVKMKVIKNTY LRRAAAKAGIEGLDDTFVGPTAVIYTDNADDVTEPARIVSKYEDDFDVIEIKGGMLEGKL TSKDEIKELAAIPGREGLLSMLVSVLQAPVRDFAYAVKAVAESKDEDSAE >gi|256541344|gb|ACPV01000130.1| GENE 3 1054 - 1416 578 120 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879341|ref|ZP_03997205.1| ribosomal protein L7/L12 [Lactobacillus crispatus JV-V01] # 1 120 1 120 120 227 100 1e-59 MALDTDKIIEELKGATILELNDLVKAIEDEFDVTAAAPVAAAGAADAGAAKSEFDVELTE AGQEKVKVIKAVRDITGLGLKDSKDLVDGAPKNVKEGVSEDEANDIKAKLEEVGATVTLK >gi|256541344|gb|ACPV01000130.1| GENE 4 1493 - 2335 641 280 aa, chain + ## HITS:1 COG:CAC1317 KEGG:ns NR:ns ## COG: CAC1317 COG1226 # Protein_GI_number: 15894597 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Clostridium acetobutylicum # 12 240 11 238 256 104 30.0 2e-22 MMKDIERRLTPYQWVMAILAIISIFLIILDFAAVINIDEPTSKWFWINSAIVVYFAIDYF RGLHAAEDKKLYFKTHIYDLLSIIPMGLLFISLNIFNLSGLVSDLRHLRLIRLAGLMGKL RNIFHTNGLLYVIFFTITFLLVGAEAFAITEHVTLDTAFWWVISTASTVGYDAIFGKTIP PHSIVGKFVTLVMMLLGIGIVGMLTSSITSYLMRRTNGANTLKTHDNIQLILKKLDNLEK QNKDLADQNKKMQAQINELKDVQNTTELHKIKEWFEKKKG >gi|256541344|gb|ACPV01000130.1| GENE 5 2341 - 2961 647 206 aa, chain + ## HITS:1 COG:lin0284 KEGG:ns NR:ns ## COG: lin0284 COG2813 # Protein_GI_number: 16799361 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Listeria innocua # 6 205 3 200 201 183 49.0 2e-46 MSEEKNQMYFATDPTAKHDQHVVDYHVDNIDLKFTTDAGVFSKMRVDYGSGVLIKAMKDV VFPKDNILDVGTGYGPIGLFAAKFWPDQTVDMVDVNERGLSLAKQNAQVNHIDNVNIYSS DCYEHVDNDKKFGLILTNPPIRAGKKVVNEILLGANEHLVNGGILLVVIQKKQGEPSARK LMTNTYGNCEILTRDKGYYILKSTKK >gi|256541344|gb|ACPV01000130.1| GENE 6 3089 - 3271 279 60 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00374 NR:ns ## KEGG: LCRIS_00374 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 60 1 60 60 106 100.0 2e-22 MKKAWKYIVAVLIVIVGVFMLGMISGDNETAAPAGIAALYLILSGIFFYHNFRNRNIEPL Prediction of potential genes in microbial genomes Time: Wed May 25 05:58:00 2011 Seq name: gi|256541343|gb|ACPV01000131.1| Lactobacillus crispatus 125-2-CHN cont1.131, whole genome shotgun sequence Length of sequence - 51386 bp Number of predicted genes - 55, with homology - 54 Number of transcription units - 23, operones - 14 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 9 - 68 7.2 1 1 Tu 1 . + CDS 90 - 560 376 ## COG0590 Cytosine/adenosine deaminases + Term 715 - 753 8.6 + Prom 655 - 714 5.1 2 2 Op 1 . + CDS 766 - 2571 1343 ## COG2812 DNA polymerase III, gamma/tau subunits 3 2 Op 2 5/0.000 + CDS 2578 - 3168 450 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 4 2 Op 3 . + CDS 3177 - 3407 270 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 5 2 Op 4 23/0.000 + CDS 3423 - 3758 565 ## COG0718 Uncharacterized protein conserved in bacteria 6 2 Op 5 . + CDS 3759 - 4358 508 ## COG0353 Recombinational DNA repair protein (RecF pathway) 7 2 Op 6 . + CDS 4358 - 4597 254 ## LCRIS_00381 hypothetical protein + Term 4603 - 4631 -0.9 + Prom 4609 - 4668 15.2 8 3 Op 1 4/0.167 + CDS 4700 - 5338 721 ## COG0125 Thymidylate kinase 9 3 Op 2 2/0.167 + CDS 5351 - 5671 373 ## COG3870 Uncharacterized protein conserved in bacteria 10 3 Op 3 1/0.333 + CDS 5671 - 6528 587 ## COG0470 ATPase involved in DNA replication 11 3 Op 4 2/0.167 + CDS 6586 - 6888 205 ## COG4467 Uncharacterized protein conserved in bacteria 12 3 Op 5 . + CDS 6888 - 7739 834 ## COG0313 Predicted methyltransferases 13 3 Op 6 . + CDS 7742 - 8476 661 ## COG3884 Acyl-ACP thioesterase 14 3 Op 7 . + CDS 8526 - 9044 529 ## LCRIS_00388 hypothetical protein 15 3 Op 8 20/0.000 + CDS 9074 - 9808 571 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 16 3 Op 9 9/0.000 + CDS 9792 - 10364 1007 ## PROTEIN SUPPORTED gi|227877624|ref|ZP_03995677.1| ribosomal protein ala-acetyltransferase 17 3 Op 10 . + CDS 10365 - 11408 1241 ## COG0533 Metal-dependent proteases with possible chaperone activity + Term 11432 - 11469 1.1 - Term 11214 - 11253 1.0 18 4 Op 1 2/0.167 - CDS 11450 - 11767 382 ## COG1804 Predicted acyl-CoA transferases/carnitine dehydratase - Term 11787 - 11817 1.2 19 4 Op 2 4/0.167 - CDS 11839 - 12900 1420 ## COG1804 Predicted acyl-CoA transferases/carnitine dehydratase - Prom 13076 - 13135 2.9 - Term 13039 - 13072 -0.9 20 5 Tu 1 . - CDS 13164 - 14873 2130 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] - Prom 14976 - 15035 7.0 - Term 14990 - 15043 11.1 21 6 Tu 1 . - CDS 15046 - 16968 1750 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 17142 - 17201 7.0 + Prom 17039 - 17098 5.4 22 7 Tu 1 . + CDS 17143 - 17778 556 ## COG2344 AT-rich DNA-binding protein + Term 17785 - 17835 4.5 - Term 17785 - 17809 -1.0 23 8 Op 1 5/0.000 - CDS 17816 - 18802 689 ## COG1609 Transcriptional regulators 24 8 Op 2 . - CDS 18818 - 20275 1357 ## COG1621 Beta-fructosidases (levanase/invertase) - Prom 20309 - 20368 9.0 + Prom 20389 - 20448 7.2 25 9 Tu 1 . + CDS 20486 - 22435 2361 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 22480 - 22520 5.9 26 10 Tu 1 . - CDS 22419 - 22649 127 ## - Prom 22867 - 22926 5.5 + Prom 22501 - 22560 4.7 27 11 Op 1 . + CDS 22591 - 23559 1203 ## LCRIS_00401 putative protein without homology 28 11 Op 2 . + CDS 23605 - 24120 583 ## LCRIS_00402 hypothetical protein + Prom 24152 - 24211 7.8 29 12 Op 1 41/0.000 + CDS 24302 - 24586 341 ## COG0234 Co-chaperonin GroES (HSP10) 30 12 Op 2 . + CDS 24640 - 26265 1560 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 + Term 26303 - 26336 -0.9 + Prom 26404 - 26463 6.5 31 13 Op 1 6/0.000 + CDS 26503 - 29100 2790 ## COG0249 Mismatch repair ATPase (MutS family) 32 13 Op 2 1/0.333 + CDS 29100 - 31025 1562 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 33 13 Op 3 29/0.000 + CDS 31025 - 31612 631 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 34 13 Op 4 1/0.333 + CDS 31661 - 32671 783 ## COG2255 Holliday junction resolvasome, helicase subunit 35 14 Tu 1 . + CDS 32731 - 33123 427 ## COG1862 Preprotein translocase subunit YajC + Term 33137 - 33168 -0.8 + Prom 33137 - 33196 8.9 36 15 Op 1 . + CDS 33227 - 34678 1487 ## COG0364 Glucose-6-phosphate 1-dehydrogenase 37 15 Op 2 . + CDS 34731 - 35789 834 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair + Term 35800 - 35839 -0.7 38 15 Op 3 . + CDS 35853 - 36809 687 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B 39 15 Op 4 1/0.333 + CDS 36802 - 38163 1405 ## COG0513 Superfamily II DNA and RNA helicases + Prom 38170 - 38229 3.6 40 16 Op 1 4/0.167 + CDS 38406 - 41045 3300 ## COG0013 Alanyl-tRNA synthetase 41 16 Op 2 6/0.000 + CDS 41106 - 41363 466 ## COG4472 Uncharacterized protein conserved in bacteria 42 16 Op 3 7/0.000 + CDS 41363 - 41791 386 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 43 16 Op 4 . + CDS 41793 - 42104 360 ## COG3906 Uncharacterized protein conserved in bacteria + Term 42111 - 42146 3.3 44 17 Op 1 3/0.167 + CDS 42162 - 44519 2302 ## COG1193 Mismatch repair ATPase (MutS family) + Prom 44521 - 44580 3.4 45 17 Op 2 . + CDS 44602 - 44913 484 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 44922 - 44974 8.5 - Term 44910 - 44962 10.1 46 18 Op 1 . - CDS 44967 - 45341 430 ## COG1970 Large-conductance mechanosensitive channel - Prom 45368 - 45427 9.6 47 18 Op 2 . - CDS 45430 - 45852 478 ## LCRIS_00421 hydrocarbon binding protein, V4R domain - Prom 45903 - 45962 3.9 + Prom 45833 - 45892 9.1 48 19 Op 1 3/0.167 + CDS 45929 - 46735 803 ## COG0796 Glutamate racemase 49 19 Op 2 . + CDS 46735 - 47355 370 ## PROTEIN SUPPORTED gi|71274727|ref|ZP_00651015.1| Ham1-like protein + Term 47361 - 47406 8.7 + Prom 47450 - 47509 5.2 50 20 Tu 1 . + CDS 47545 - 48423 342 ## LCRIS_00424 putative protein without homology + Prom 48460 - 48519 4.3 51 21 Op 1 . + CDS 48584 - 49228 530 ## LCRIS_00425 putative protein without homology 52 21 Op 2 . + CDS 49244 - 49513 124 ## gi|293379869|ref|ZP_06625987.1| hypothetical protein HMPREF0891_1107 + Term 49521 - 49569 5.2 - Term 49509 - 49555 2.0 53 22 Tu 1 . - CDS 49583 - 50437 709 ## COG0668 Small-conductance mechanosensitive channel - Prom 50465 - 50524 5.9 + Prom 50466 - 50525 7.5 54 23 Op 1 . + CDS 50546 - 50971 411 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain 55 23 Op 2 . + CDS 50989 - 51357 575 ## LCRIS_00428 hypothetical protein Predicted protein(s) >gi|256541343|gb|ACPV01000131.1| GENE 1 90 - 560 376 156 aa, chain + ## HITS:1 COG:BH0033 KEGG:ns NR:ns ## COG: BH0033 COG0590 # Protein_GI_number: 15612596 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Bacillus halodurans # 1 147 9 154 159 166 53.0 2e-41 MQLAIDQAKEAEKQGEVPIGAVVVDPDGRVVGTGYNRRELDEDATQHAEMIAIKEACSKL GMWRLIDCSLFVTLEPCPMCAGAIINSRIKDVYFGALDPKAGACGSVVDLFSVEKFNHHP HAIRGLYRDQCAQMLKDFFRAIREKQKAAKLAQKEV >gi|256541343|gb|ACPV01000131.1| GENE 2 766 - 2571 1343 601 aa, chain + ## HITS:1 COG:lin2852 KEGG:ns NR:ns ## COG: lin2852 COG2812 # Protein_GI_number: 16801912 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Listeria innocua # 1 601 1 579 579 431 42.0 1e-120 MAYQALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAK ALNCTNLQDGEPCNECANCIAADQGSMSDIMEIDAASNNGVDEIREIRDKVKYAPTEGKY KVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISK EDLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYDDALQI TGFADRENIEKILLALLNQDAGQALQLTQDELAKGASSKNILDEIIDLTTKSLLIVKTDE NKQETFLTKDFIEKIKSVSTDSYYRLINLANNALNDLRYTNQQQIPLEVFLVEASSPAPV QTSAAPAKTTPAQPAQGNTDLQAELAALKKQVVDLTQKLSEVSNKPSLSTNQVFHLDTAV PKVAPKPAVKPKEKQTKKPVRKVKKTTAENRKQVYHVLENATRNDLETIKNVWPDLQSVL AVSEKALLDVLEPVAASPEQVVMKCKYTLWFENASADNDLLGRLTDYIEKFAKHSYGIVL VPDNDWLAVRKEFVESHKDELLAKKKQQIEIQEEKSDEPEVDPEVINKAKDLFGDAVNIK D >gi|256541343|gb|ACPV01000131.1| GENE 3 2578 - 3168 450 196 aa, chain + ## HITS:1 COG:SP1767 KEGG:ns NR:ns ## COG: SP1767 COG1442 # Protein_GI_number: 15901598 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 7 162 548 701 814 117 42.0 2e-26 MSNDYNIKVLNKETTLQILLEDHNSLIRFGDGELDLIRGASIPYQDYQPELAGSLKELLL EGSNRRLLVGLSDVFEKLDRYNDYCRNFYQNSFFPNNHDLLREVELQYNVYVSTFFSRPY IDLVDKSHAKDYFAKMKQLWQDHDLLIVEGKYSRSGEGMTCFLMLDQLVDSFVRQLMHIV AKKLLKMKLLKMQLIG >gi|256541343|gb|ACPV01000131.1| GENE 4 3177 - 3407 270 76 aa, chain + ## HITS:1 COG:SP1767 KEGG:ns NR:ns ## COG: SP1767 COG1442 # Protein_GI_number: 15901598 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 1 75 740 812 814 82 54.0 3e-16 MLGPTAKVIVADLIAQLNNQMIDIGHIDSEYEWMKMGVTNKVKIPHKHTAEFNFDDKQVK LEKDDNFDKQIISIIE >gi|256541343|gb|ACPV01000131.1| GENE 5 3423 - 3758 565 111 aa, chain + ## HITS:1 COG:L122849 KEGG:ns NR:ns ## COG: L122849 COG0718 # Protein_GI_number: 15672102 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 15 110 2 97 99 93 57.0 1e-19 MSRRPNFGGMGMGGMNMQQMMKQAKKLQAQMAEEQENITAQEFTGKSADDLVVATFTGDR KLKDIKIDKEAIDPDDPDMLQDLVIDAVNKGLAKIDEATQASLGKYTKGLM >gi|256541343|gb|ACPV01000131.1| GENE 6 3759 - 4358 508 199 aa, chain + ## HITS:1 COG:L0265 KEGG:ns NR:ns ## COG: L0265 COG0353 # Protein_GI_number: 15672322 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 1 196 1 195 198 261 63.0 4e-70 MQYPLPIAHLIDAYMKLPGIGEKTATRLAFYTMDMPDQDVDDFAKSLVQVKKDIHQCPIC GNITEKDVCDICSNPNRDQTTIMVVEQPKDLMAFEEMGEYDGLYHVLHGVLSPMDGIGPE EINIKSLITRLQKNDAVKEVILALNSTPEGESTAMYISKLIKSAGIKVTRLAAGLSVGSD IEYANSITLKRAVQGRTAL >gi|256541343|gb|ACPV01000131.1| GENE 7 4358 - 4597 254 79 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00381 NR:ns ## KEGG: LCRIS_00381 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 79 1 79 79 124 100.0 1e-27 MANKKQAKIKAMGDQKLVAEIEKLQNQIALEQDLDQTTLDLSEDNYVQNRILKAKYTFLY NEARHRGTRFSGITNAITQ >gi|256541343|gb|ACPV01000131.1| GENE 8 4700 - 5338 721 212 aa, chain + ## HITS:1 COG:L3846 KEGG:ns NR:ns ## COG: L3846 COG0125 # Protein_GI_number: 15672380 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Lactococcus lactis # 1 212 1 211 211 208 50.0 6e-54 MRGYFVSFEGPDGAGKSTVLKEVLNQIGSELETQYLVTREPGGSKIAEKIRDIILDPAND KMDNKTEALLYAASRSQHVEEIIRPALKEGKVVFSDRYVDSSLAYQGAGRDLGIQEVKQI NDFATDKLDPDLTFFLDLDPEVGLKRIEKLRPGQEDRLEQENLAFHKKVYAGFLKVKETY PERFVTVDATQPIDQVVAQVIATLKQRMPELF >gi|256541343|gb|ACPV01000131.1| GENE 9 5351 - 5671 373 106 aa, chain + ## HITS:1 COG:lin2840 KEGG:ns NR:ns ## COG: lin2840 COG3870 # Protein_GI_number: 16801900 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 106 1 109 109 111 52.0 4e-25 MKLVIAIVQKEDSNDLQRAFVQNDFRATKLATSGGFLSQGNTTFLVGCDDDKVDDVLKII KEQSRAREEIATPHMVSTGYEITQPLKVTVGGATYFVVPVDEFKRF >gi|256541343|gb|ACPV01000131.1| GENE 10 5671 - 6528 587 285 aa, chain + ## HITS:1 COG:SP0936 KEGG:ns NR:ns ## COG: SP0936 COG0470 # Protein_GI_number: 15900816 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Streptococcus pneumoniae TIGR4 # 13 283 16 294 296 111 31.0 2e-24 MIDLSNVGKKQTQFLKIAYDQKKLAHSYLFVDSDEARALNTAYWLACLFNCTGENKPDGS CQNCRQILSGNHPDVLLVAPDGKQTLGIDQIRPLKEELAKSPVESTRRFFFINEAQKLTL AAANGLLNLLEEPVAPVVTILITNNSDQILPTVRSRTQIINFDNGERASGRTAVLLENGF SKAEIEELGNLDKWNQAIKYFYQEMLEHNSLALVSAHKLAADAKLVSEQRYILLQLKLLA EQDLRNPAKRIMAATMLKNLIEIDKMRLSNVNLQNALDYLALKWK >gi|256541343|gb|ACPV01000131.1| GENE 11 6586 - 6888 205 100 aa, chain + ## HITS:1 COG:SP0937 KEGG:ns NR:ns ## COG: SP0937 COG4467 # Protein_GI_number: 15900817 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 5 86 24 102 105 60 34.0 6e-10 MTKTIASLENDILETLKENTELKVENQLLHEKLDKLTANQPAPETKTQSGLESLKKIYDS GYHICNMYYGSHRDPSADCMFCLDILDNFGEKKGKKKDGR >gi|256541343|gb|ACPV01000131.1| GENE 12 6888 - 7739 834 283 aa, chain + ## HITS:1 COG:lin0210 KEGG:ns NR:ns ## COG: lin0210 COG0313 # Protein_GI_number: 16799287 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Listeria innocua # 1 282 2 291 293 244 45.0 1e-64 MKRQSSYAKDEGKLYLVPTPIGNLEDITIRAKKVLTDADYVAAEDTRTSGILLEKIGVHN KMISFHKYNSKERAPELIKLMKEGAVIAEISDAGMPVISDPGYVLVQECIKHDIPVVPLP GPNAFSTALIASGFNQPFTYYGFLPRKSSEQKTYFAQMRDNRATSIFYEAPHRLAKNLKT LASVLPKDRQIVAARELTKIHEEFIRGSVEEVTNYFNENAPRGEFVILVSPNTEAPKQLS WTELIDLVNDLVEKGESKKDAIKQVAKQHHVSKNELYDQYHQD >gi|256541343|gb|ACPV01000131.1| GENE 13 7742 - 8476 661 244 aa, chain + ## HITS:1 COG:SP1408 KEGG:ns NR:ns ## COG: SP1408 COG3884 # Protein_GI_number: 15901262 # Func_class: I Lipid transport and metabolism # Function: Acyl-ACP thioesterase # Organism: Streptococcus pneumoniae TIGR4 # 1 244 3 242 245 115 28.0 7e-26 MKYTEEYQIEFKDCDENRRLKLPALVDLMMQVSEHQLSQGGAGTDDLVKRGLGWVVTQYH FEIKDLPKPGDQVILSTEASGYNRFFEYRDFGVSTQDGKPLVTVKSQWVMLDLKKRHMVP ADTKMMEDWGAPLLKKMPRFPRLRPQTEYEQKRSYRARYDDLDTNHHVTNSHYFSWFVDI LDRNFLKEHIVTAIDIKFDKEVHYGESINSCMDLVQYDIIITSHAIEAEDGTVKAVCELS WREI >gi|256541343|gb|ACPV01000131.1| GENE 14 8526 - 9044 529 172 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00388 NR:ns ## KEGG: LCRIS_00388 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 172 1 172 172 283 98.0 2e-75 MNTKKILRTDLQQLVFLGIVVAMKIILSQFSFGPVMVKVGLGFIGSVLLGYLFGPLWGTI GGGISDLISSALFGDQGGFFIGFTLTAMAGPFIYALFLYNKPVKIWRIIASTILVTVIVN IGMNTLWLHIMYGINFNAALIQRLPKETIVPWIQMVISYFVLQAVSRVKIKK >gi|256541343|gb|ACPV01000131.1| GENE 15 9074 - 9808 571 244 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 42 234 1 191 380 224 57 1e-115 MKILSVSTATNHLSVALNDGQQIIVEKNERDERNHSEHLDPLIDEILKDNDLSLKDIDRF AVAIGPGSYTGLRIGITTVKMFASILDKEVVGISTLQALAKGVQEDALVITGLDARNDNY FAAGYLSGAVPENVIPDGHYNIDVLIKAIQDYAAKHEVKKIVFVGSGLEKQDEKFKALNI PYVYGTEEENVIHAGLIGQLAENAVPVDPDKLLPRYLRRTQAEVDWHKKTGKPFEPDSHY VEEV >gi|256541343|gb|ACPV01000131.1| GENE 16 9792 - 10364 1007 190 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227877624|ref|ZP_03995677.1| ribosomal protein ala-acetyltransferase [Lactobacillus crispatus JV-V01] # 1 190 1 190 190 392 100 1e-108 MLKKFNQFFHQQLNRIDMSFTPFIANVNGKRLQIMQATDDNIPDLPVLEEQVYSGRTPWN KFSFERELEKRHNCLYLVVYYESMLVAFIGARFTPEETHITNIAVAPAFQNMHIGRYLMQ LIIDRARENDSDCVSLEVRVDNEIAQKLYRSLGFEGTFIRKNYYHDTHTDAMNMVLWLKP HQIKRKKFTF >gi|256541343|gb|ACPV01000131.1| GENE 17 10365 - 11408 1241 347 aa, chain + ## HITS:1 COG:SP0129 KEGG:ns NR:ns ## COG: SP0129 COG0533 # Protein_GI_number: 15900071 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Metal-dependent proteases with possible chaperone activity # Organism: Streptococcus pneumoniae TIGR4 # 3 337 2 330 336 387 57.0 1e-107 MKKNVRILAYESSCDETSTAVIKNGREIESLIVATQIKSHQRFGGVVPEVASRHHIEVVS QITKEALAEANCTWKDIDAIAVTYGPGLVGALLIGVSAAKAASMATGIPLIGVDHIMGHI MAAQLKDEIEYPALALQVSGGHTEIVLLKDPVHFEIIGDTRDDAAGEAYDKIGRVLGVNY PAGKTIDAWAHEGKDTFNFPRAMMEDDDYDFSFSGLKSAFINTCHHADQIHEKLNKYDLA ASFQAAVIDVLAHKTIRAIKQYKPKTFIMGGGVAANHGLRDRMSAEIAKLPKADQPKVIL PDIKLCGDNAAMIGAAAYNLYNNGQFADLTLNADPSLELPYAKSMLN >gi|256541343|gb|ACPV01000131.1| GENE 18 11450 - 11767 382 105 aa, chain - ## HITS:1 COG:yfdE KEGG:ns NR:ns ## COG: yfdE COG1804 # Protein_GI_number: 16130303 # Func_class: C Energy production and conversion # Function: Predicted acyl-CoA transferases/carnitine dehydratase # Organism: Escherichia coli K12 # 23 100 22 99 394 82 53.0 1e-16 MTEPNYAELEAKNSHLDKNKPYPLSGMLVIDFTHVLSGPTCTRMLADSGARVIHIERKTG DDTRHMGPYIADGSSEYFRICNAGKESIALDLKDPKDHALVEKNT >gi|256541343|gb|ACPV01000131.1| GENE 19 11839 - 12900 1420 353 aa, chain - ## HITS:1 COG:yfdW KEGG:ns NR:ns ## COG: yfdW COG1804 # Protein_GI_number: 16130306 # Func_class: C Energy production and conversion # Function: Predicted acyl-CoA transferases/carnitine dehydratase # Organism: Escherichia coli K12 # 1 336 83 416 416 280 48.0 3e-75 MYDLAKKADVFVENIAPGSADSNGFGWEKLHALNPRLIYASLKGFNEDSRFENVKAFEPV AQSAGGAASATGWNEGKANVPTQSAATLGDSNPGMHLTIGILAALLQREHTSEGTFVYQS MQDAVLNLCRIKLRNQIMLDNLGALPHYAVYPNWKWGKAIPRAENTEGGQVIGRTYKAKG WETNPNAYVYIVIQNSDKSWAAIANTMGHPEWITNPRFDGWHNRQLHKEEIYPLIESYTK QYDKYELTKKLGAAGIPVGPVLDWHEIENGPDLNKDGTIVTIDQGGNRGKFKTIGLPFSL SNYKRAPDLGENNKEILASLGYDPDQIEKLTEEGVISKAQGPKNPRTEVIKGE >gi|256541343|gb|ACPV01000131.1| GENE 20 13164 - 14873 2130 569 aa, chain - ## HITS:1 COG:MT0126 KEGG:ns NR:ns ## COG: MT0126 COG0028 # Protein_GI_number: 15839499 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Mycobacterium tuberculosis CDC1551 # 9 556 15 569 582 560 54.0 1e-159 MTQNVSLTGAALLIDALQANGLNNMYGVVGIPVTDFARLAELKGMKFYEFRREDAAVDAA AAAGFLTDKPGVALTVSAPGFLNGLTALAEATKNCFPMIMISGSSDRHIIDLDRGDYEGL DQYNVAKPLCKAAYRVDRAEDMGLAVARAVRTAMSGRPGGGYLDLPAATVADTVAQKSDA HIYEVVDPAPKQLPLDDAIERAVELLKNAKHPAIILGKGSAYARSEAEVRELVTKTGIPF LPMSMAKGVVPDDSPSSAASARSFTLGQADVVLLIGARLNWMLSNGEAPLFNEDAKFVQV DIDATEFDSNRKIDAPLQGDITSVLQKLNAALEKADVKAPQDWLDSIKNACEANNEKFAK RIAASEAKPTLGFYSAIEPINDLMQKHPDTYIVSEGANTLDIGRNLIGMQKPRHRLDTGT WGVMGVGLGYAIAAAVETGKKVISLHGDSAFGFDGMEVETICRYHLPVTVVIINNGGIYN GDRNPVKDQLGPTVLSHNAHYAEIAKAFGGDSYRVSNYAEMKDALEKAYESGNPSIIDAQ IPESMGKESGHIGNLNPELDLAQLEDKDN >gi|256541343|gb|ACPV01000131.1| GENE 21 15046 - 16968 1750 640 aa, chain - ## HITS:1 COG:SPy1025 KEGG:ns NR:ns ## COG: SPy1025 COG0488 # Protein_GI_number: 15675024 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Streptococcus pyogenes M1 GAS # 1 638 1 635 635 536 46.0 1e-152 MIIAQGHDLEQQFGANTLFKNVNFSIDSNARIGLVGPNGVGKTTLLKIMTGEQEPTHGEF TVNKGIDVGYIAQENALDENKTIWDEMETVFAPLIREGKSLVQLQEKIADHPEDQELLKQ YDQKQFNFEQKGGYTYQSDIKSILNGFKFPEDTWQKKIGSLSGGEKTRLAFVKLLLRKPA LLLLDEPTNYLDLDTLDWLEGFLKNYSGAILVVSHDQYFLDHLAAQIFELEFGKLTAFKG NYSAYVMQREQRDKDQEAAYEKQQAEIKKDEEFIQKNLVRATTTKRAQSRRKKLEKIERI TPPKHKNKVRIHFSSDHPSGKEVLIFNDLTIGYPDKTMVKDISFQINKGDRVAIIGPNGI GKSTLLKTIMKQLTPKSGSIKYGASLEIGYYDQELQGLDSSKTVLDTVWDRHKTMPERDV RSILASFLFTAKDIDKTVGQLSGGQKARLTLTVLSLEHDNFLLMDEPTNHLDIEAKEVLE KALKDFDGTLLFVSHDRYFINQLANKIVLVRDGHAKVYDGNYSYYLDEKAKQAAMAENSA AEPEVEPSKQISQQKLSYQEQKQRDSQKRKLQRAIDNAEKQIEQLEEREQEIQTEMANPE IASSFDKLGPLQEQLSDVQQKLDEANSAWEKAIEEMDNFE >gi|256541343|gb|ACPV01000131.1| GENE 22 17143 - 17778 556 211 aa, chain + ## HITS:1 COG:BS_ydiH KEGG:ns NR:ns ## COG: BS_ydiH COG2344 # Protein_GI_number: 16077664 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Bacillus subtilis # 2 205 4 205 215 258 61.0 5e-69 MEKIKIPKATAKRLPLYYRYLIILNEEGKDKVSSTELSEAVQVDSASIRRDFSYFGALGK RGYGYDVKNLLSFFKKILNQDTLTNVALIGVGNLGRALLNYNFKRSNNIRISCAFDINKE ITGRILSGVPVYDMDDLKQQLSDQQITIAILTVPSTAAQKTTDEMVDAGVKGIMNFTPIR LSAPADVRVQNVDLATELQTLIYFLDSDKEN >gi|256541343|gb|ACPV01000131.1| GENE 23 17816 - 18802 689 328 aa, chain - ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 326 1 320 321 310 50.0 3e-84 MAAKLSDVAKKAGCSVTTVSRVINNHGYLSQKTKDKVFAAMRELNYRPNSIARSLQGKKM KLVGLIFPEITNPFFAELVQDIETTLFQQNYKVILCNAGQNKEKEREYLRMLQANQVDGI IAGAHNLGINEYQQLGLPIVSFDRKLSDNVPIVSCDNYQGIKLAVHDLVQAGCHKIYFLG NEHRKGNPTDERLAAYLDEAKECHFSAHIRSVAFSDSSNIKNMKIHDMLVNDQPDGVVCT DDLTAVLVLQEAKKLGIKVPKELKVIGFDGTKQIQTYHSELSTIAQPIHDIATLLVKLLL TRISNPDEKLRQKNYILPVKLIKSETTA >gi|256541343|gb|ACPV01000131.1| GENE 24 18818 - 20275 1357 485 aa, chain - ## HITS:1 COG:SP1724 KEGG:ns NR:ns ## COG: SP1724 COG1621 # Protein_GI_number: 15901557 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Streptococcus pneumoniae TIGR4 # 1 461 1 460 484 454 48.0 1e-127 MEWTREKRYLPYQDWDADTLMHLQAQAANSPYQMRYHLHPISGLINDPNGFSYFDGAYHL FYQSYPFGAVHGLKSWWHFKSTDMVHWENLGLGIEPDTMADSHGAYSGSAREIDGKLFIM YTGNHRDENWVRTPYQIGAWMDKNNKVSDKTILFKNPDHITEHFRDPQIIKENDTYYAIL GAQDKKEKHGHIDVWKSQDLKNWEELGFLDFTNEDMGYMIECPNIVRVDGKVVVIFCPQG LDKKVAAYDDIYPNMYVIADDIDWENHKLINPGKLHNLDHGFDVYATQAFNAPDGNAYEV SWVGLPDTTYPTDDENWANCLSQVKELHLKSDKLIQTPVKAISSIRKNEASISNQVVSDQ AGQQFELELTIKANQSGTLHLAANNDLSNSLQLNFDTKNGKLVLDRAHAGQKVAVDYGES RAITLSPNHDLKLDIFVDHSLIEVFVNDGEKVLTGRYFADQTNKKIAFAQDIDYTGKLWQ MQTIL >gi|256541343|gb|ACPV01000131.1| GENE 25 20486 - 22435 2361 649 aa, chain + ## HITS:1 COG:SA2167_2 KEGG:ns NR:ns ## COG: SA2167_2 COG1263 # Protein_GI_number: 15927957 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Staphylococcus aureus N315 # 97 468 1 385 385 343 48.0 5e-94 MDHRKVAERVIKDVGRDNIIAGAHCATRLRLVLKDDSKVDQKALDNDPDVKGTFKTNGQY QVIIGPGDVNDVYDEFIKITGLKELSTDDLKKVAAEGKKKNPVMDFIKLLSDIFVPIIPA LVAGGLLMALNNFLTSPGLFGPKSVVQMVPSVAGISSMIQVMSAAPFIFMPILVGMSAAK RFGANQFLGATIGMIMTTPGLLGANHFWDIFGLHVAQTNYQYQVIPVLVAVWVLSILEKY FHKHLPSAVDFTFTPLLSIMITGFLTFTIIGPVFKGVSDGITNAIVWLYDTTGAFGMGVF GLTYSAIVTTGLHQSFPAVETQLLAAFAKNPASSGDFIFVTACMANVAQGAATFAVYFLT KNKKMKGLASSSGVSALLGITEPALFGVNLKYKFPFFCALIGSGVAAAFAGLMHVTAAAL GSAGFLGFLSIYPKTIPMWVVSVLISFAVAFILTYVYGKGHLKEEVAEQDVPVNDATDYA EETQKAEKLGKEQMALKDEVIASPVDGTPESLTKVNDQVFSAKLMGDGAAVIPSDGTIYS PVTGTVTIAYETKHAYGIKSDDGAEVLIHIGLDTVNLKGEHFESFVKQGQRVNKGDKLGT VDLDAVKKAGYDTTVMVVITNTANYANVSRITDAGDKHGDKLIAVTAHN >gi|256541343|gb|ACPV01000131.1| GENE 26 22419 - 22649 127 76 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLKTVNPVTNTPITPLFNFIKHTLTLFFFIENILLKLKIEVQHLVLKNAKKQSFLASFIL IVLIFSRGVEETNCVQ >gi|256541343|gb|ACPV01000131.1| GENE 27 22591 - 23559 1203 322 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00401 NR:ns ## KEGG: LCRIS_00401 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 322 1 322 322 614 99.0 1e-174 MKLKSGVIGVLVTGLTVFSINLTSSKIKAAITVPNPKTDYVVKTTSNVYKSNGKRTSFKT RGQIQTGNVPVIESQLYEGKFINVQGTKTINGTAYYKIGPNAYIKQNNVLNYAQEKAKLE AYQAQDDVNDDSDQSTELSSDDVNFDIAWYDNINEDPSPAMFDDSGYHNRVIKNARKLLG YFTYGTGAYRTNFGSWRHPNKNGSTDCSGFVWIVMKRAGYRVGNAPFFTLPMERDAKSTH GYLKKISAKNIRPGDIVIVNTGNGVGQNGHAAIVDGKYDGWDTQIIEEGGNLGVDDVHRS SLGSSLSDKLAKGRITYARPVK >gi|256541343|gb|ACPV01000131.1| GENE 28 23605 - 24120 583 171 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00402 NR:ns ## KEGG: LCRIS_00402 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 171 1 171 171 259 100.0 2e-68 MKKNSTLKHVWIMTAVYWVVGILSIFWGKLDHTFASQLKEINNIYVLVLIIILSLPLLLS LLLSVKVKMPRLICNPLVAVIYLLVVIAAGVAYNLQNIIGYFFPIILFIIMALVAVFYAL VKTFSSRKSGKYFFIDGKDKKECHDFWDAYKKYYVMGLTYGIIDGLITVIS >gi|256541343|gb|ACPV01000131.1| GENE 29 24302 - 24586 341 94 aa, chain + ## HITS:1 COG:lin2175 KEGG:ns NR:ns ## COG: lin2175 COG0234 # Protein_GI_number: 16801240 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Listeria innocua # 1 94 1 94 94 94 55.0 4e-20 MLQPIGDRVIVKVKKEEEETVGGIVLASNAKKKPTEGEVVAVGEGAYASNGEKIPMAVKK GDVVLYDKYSGTDVEYEGEKYLVLHEKDILAIAK >gi|256541343|gb|ACPV01000131.1| GENE 30 24640 - 26265 1560 541 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 540 3 541 547 605 57 1e-172 MAKDIKFSENARRSLLKGVNKLADTVKTTIGPKGRNVVLEQSYGNPDITNDGVTIAKSIE LKDHYENMGAKLVAEAAQKTNDIAGDGTTTATVLTQAITNEGMKNVTAGANPVGIRRGIE KATEAAVNELHKISHKVESRDQIANVAAVSSSSKEVGNLIADAMEKVGHDGVITIEDSRG INTELSVVEGMQFDRGYLSQYMVTDNDKMEADLDNPYILITDKKISNIQDILPLLQEIVQ QGKSLLIIADDVTGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAQLQDIAALTGGTVIT DDLGLELKDTKIDQLGQARRVTVTKDSTTIVDGAGSKDAIQEREDSIRKQIEESTSDFDK KKLQERLAKLTGGVAVIHVGAATETELKERRYRIEDALNSTRAAVDEGYVAGGGTALVDV EKAINDLKADTADENTGIQIVLRALSAPVRQIAENAGKNGEVVLNHLLKQENEIGYNAAT DTWENMVDAGIIDPTKVTRTALQNAASIAALLLTTEAVVAEIPEEKPANPAPQAGAPGMG M >gi|256541343|gb|ACPV01000131.1| GENE 31 26503 - 29100 2790 865 aa, chain + ## HITS:1 COG:lin1440 KEGG:ns NR:ns ## COG: lin1440 COG0249 # Protein_GI_number: 16800508 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Listeria innocua # 1 861 1 859 860 820 50.0 0 MTEKTTPMMEQYYEIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNRTKNP IPMAGVPHMAVDTYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGTMMNEGPN DAKDSNYLTSVITTKSGFGLAYSDLSTGEIYATHLKSFDAVSNELLSLRTREVVYNGSLS EQNKDFMHKANITISRPTPIEGEHAEISYVEQNLTNGAEKEATRQLVGYLLSTQRRSLAH LQIAKSYEVNQYLQMSHTVQNNLELVASAKTGKKMGSLFWVLDKTHTAMGGRLLKQWLAR PLLNMDEINHREEMVQALLDGYFTRENAVDALKGVYDLERLTGRIAFGNVNARELLQLSR SLQAVPVILDALEQSDSDILVDFAKKIDPLKGVAEMITSTIVKDPPVLTTEGGLIQGGVD PQLDRYRDAMNNGKKWLAEMEADERQKTGIDNLKVGYNKVFGYYIQVSNGNKSKVPLDRY TRKQTLTNAERYITPELKEHENLILEAQTRSTDLEYDLFVKLREDVKKYIPALQKLGGQL AALDVYCGFATVAEQNNYCRPTFHADNQDINVTNGRHPVVEKVMTAGSYIPNDVKMDEGT NIYLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSADLPIFDQIFTRIGAADDLISGQ STFMVEMSEANEALQYATKRSLVLFDEIGRGTATYDGMALAGAIVKYLHDKVGAKALFAT HYHELTVMDETLDHLKNIHVGATEENGKLIFLHKILPGPADQSYGIHVAQLAGLPRNVLR EATKLLKRLEAQGSELAPVSQQLDLFAEPVENSVEETETQNDKPAITDAQQDILDDISNL YLADKTPLQVMQMVADWQKDLKDDD >gi|256541343|gb|ACPV01000131.1| GENE 32 29100 - 31025 1562 641 aa, chain + ## HITS:1 COG:SP0173 KEGG:ns NR:ns ## COG: SP0173 COG0323 # Protein_GI_number: 15900110 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Streptococcus pneumoniae TIGR4 # 1 639 1 635 649 456 40.0 1e-128 MSKIHELSETLTNQIAAGEVIERPASVVKELVENSLDAGATRIRVDFVDAGLKQIVVQDN GTGIARDQVDLAFTRHATSKIANEHDLFKVSTLGFRGEALASISAVSHVEILTATENAIG IRANYSGGNKKGQEDAAARKGTKITVKDLFFNTPARLKYLRSSRTEIMKIVDIINRLALG YPHVSFTLSNTGKILLRTPGNNNLKQTVANVYGRHIAEKMEKFEAKDSDFKITGLMSKPE LTRSTRNFISILLNGRYIKNFQLNTAILDGYGSKLAARHYPIIVLAIKVDPLLVDVNVHP TKQEVRLSKEKELGRLITSAISNTLVEKVGQISAFANLENKRDTLVDQLSFNLNQDVVNT ARKKEPEIREQEKPKFLTIESDDSEDNIQNEAVKQDSEKKYVDLNQPREDDQYIVTKTWK QNVALQQALTPFPTTRTNQEVISSGDETLANNLPRLVYVGQTDTYLFAQHNGDLFLIDQV AARRRLKFEQIFHMITAKKVVQQGLLTPIILEFGNLDFMQIKDQVEQIKQVGIYLEDFGQ NSFIVRSYPTWIHDNVEDSIRKILDGYLNVDKGKAKNLFSRIAAMQAKREITGKIKLSAA EAEQILLDLRKCTDPYHDADGRIILVRMSQNELRKMFKKDE >gi|256541343|gb|ACPV01000131.1| GENE 33 31025 - 31612 631 195 aa, chain + ## HITS:1 COG:lin1568 KEGG:ns NR:ns ## COG: lin1568 COG0632 # Protein_GI_number: 16800636 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Listeria innocua # 1 194 1 201 201 172 48.0 3e-43 MYEYFEGVITVVTPSYVVVDVGGVGYKVYSPTPFAYTQGQKAKVFIEQVVRDTGITLYGF QSQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKTASQ IVLDLKGKLGDYVARLDRPDNGENVPPALNDALLALIALGYTQKEVDRITPKLEKVAANT ADQYIKKGLALLLKK >gi|256541343|gb|ACPV01000131.1| GENE 34 31661 - 32671 783 336 aa, chain + ## HITS:1 COG:SP0259 KEGG:ns NR:ns ## COG: SP0259 COG2255 # Protein_GI_number: 15900193 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Streptococcus pneumoniae TIGR4 # 15 329 12 326 332 398 64.0 1e-111 MAEDQVTSGDIENPEEQQMELSLRPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLL YGPPGLGKTTLAFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAK PVEEVLYSAMEDYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGELSAPLRDRFGIVEH MQYYTIDELEQIVLRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEK TISLETTEGALKQLQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESL YEPYLLQHGFILLTPRGRMVTDKAYLQLGLPIPGDK >gi|256541343|gb|ACPV01000131.1| GENE 35 32731 - 33123 427 130 aa, chain + ## HITS:1 COG:SP2029 KEGG:ns NR:ns ## COG: SP2029 COG1862 # Protein_GI_number: 15901850 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Streptococcus pneumoniae TIGR4 # 18 104 10 92 99 76 45.0 1e-14 MNILFLANAGAAASSNWMMIGLFIILIAFTYFGMIRPQKKQQQQRMQMMDKLKKGDEVIL VDGLHGKVDKINSDKTIVVDADGIYLTFERMAVRRVIPVAAPATPAAETKAEAPAEKPEE KADETKKEDK >gi|256541343|gb|ACPV01000131.1| GENE 36 33227 - 34678 1487 483 aa, chain + ## HITS:1 COG:SP1243 KEGG:ns NR:ns ## COG: SP1243 COG0364 # Protein_GI_number: 15901104 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 6 483 5 483 495 441 45.0 1e-123 MKNIPVVMILFGGSGDLAHRKLYPALFNLYEQGLIHDNFAVIGTARRPWSHEYLREQVSD AIHETHDTVDENELKAFASHFYYQSHDVTNVEHYEILKNLAQELDDRYSAQGNRLFYMAM APRFFGTIATHINDQDLTGSGFNRIVVEKPFGHDLASAEELNKQITASFDENDIFRIDHY LGKEMVQNIMPMRFTNPMVQNIWCSKYIKNIQVTLAERLGVEARGGYYDTSGALRDMVQN HIFQIITLLAMPEPKDLSSASVHQAKQDLLKSLIIPTPDDVKKYFVRGQYLGSDTTFAYK QEPNVDPESTTETFVAGKVKFNEGPIAGVPIYFRTGKEFKEKKNRIDIVLKHINNPYGQA HSNNITIVIDPTSEIYFTINGKRIDQPGIRRENLTYEFSKAEMAKVPDGYERLLHDVFVN DSTNFTHWSELKRYWEFIDAVEDAWQKENEAGNPAIAQYLPYRMGPKEANTIFESPTEHW IYE >gi|256541343|gb|ACPV01000131.1| GENE 37 34731 - 35789 834 352 aa, chain + ## HITS:1 COG:SP0458 KEGG:ns NR:ns ## COG: SP0458 COG0389 # Protein_GI_number: 15900374 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Streptococcus pneumoniae TIGR4 # 1 340 10 344 344 271 44.0 2e-72 MDAFYASVEMQEHPEWKNKALIVGQDPRQNGGHGVVATCNYVARKYGVHSAMAAIQAVRL VPKELIVFTRPRFDKYRAVSAKIHSFMHDVTDQVESVALDEAYLDVTHPKIEQESAVQIA LDLQKRIRQEVGLNSSFGVSYNKFLAKMGSEYAKPFGRTVILPSEVQNFLAMQKIEKFPG IGPKTQEELHQIGVYTGADLEKVEVLTLIKKFKKMGYILAQHARGIDLRPVVTDSEANRK SIGMERTYEPAIYTEDEALTNIRNYCNHLEAALKKRNFKAGTVVIKVRNNNFDTVTKRKK LKTPSDSHLDFYDVARDLFEATSSFLDDGIRLLGVTVTDFEKKKYQSISLFD >gi|256541343|gb|ACPV01000131.1| GENE 38 35853 - 36809 687 318 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 1 311 1 310 311 269 45 3e-71 MSSFDDIYEKILQYPTIILHRHTSPDPDAIGSQAGLARALMEKFPDKRILCAGENDEGDL AWINHMDQVKATDYEGALVITTDTANTPRISNKLYDKGDFLIKIDHHPDVDPYADMSYVD PDAPAACQIIVDFLNEEGFKITKEVAYPLYAGIVGDTGRFMYPETSEHTFKVAAQLASTG INITEIARNIADVTFDEAKLQALAMDKMEIDPVGAAFTILMQSDLKKLGLTDDQANVAVS TPGRIKDVLAWNVFVEKPDGTFRVHYRSKGPVINELAAKHDGGGHALASGANAKDMDEVK QVFAEVVEVTKKFKEDHE >gi|256541343|gb|ACPV01000131.1| GENE 39 36802 - 38163 1405 453 aa, chain + ## HITS:1 COG:L0340 KEGG:ns NR:ns ## COG: L0340 COG0513 # Protein_GI_number: 15672392 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Lactococcus lactis # 5 447 3 444 446 390 47.0 1e-108 MNNIFIDSRIKPAIQAGLKKIHFEKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVP IFNEIEEDKRYVQAIVTLPSRELADQLYQVARQLRDAAGMHFSIAHLAGGTDRERQLEKY QNNTPQLVIATPGRLLDFVQKKVFAVDQVKTFVIDEADMTLDMGFLNDIDQVAAKLPKDV QIAAFSATIPVKLSNFLRKYMAHPDEIVIDNPSVIAPTIKNDLLDIGSKDRKNVLYKLLT MGQPYLALVFANTKQKVDELTNYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQYVVA SDLAARGLDIDGVSLVVNYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRIEELE KMGVHFDFVEIKNGELVPRKHYRSRENRQSKNRKLDTKLVGYVKKEKRKRKPGYKKKIKR AIQEDNRQKRKLEQRHEVRKAKRLRKRKREQGL >gi|256541343|gb|ACPV01000131.1| GENE 40 38406 - 41045 3300 879 aa, chain + ## HITS:1 COG:lin1539 KEGG:ns NR:ns ## COG: lin1539 COG0013 # Protein_GI_number: 16800607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Listeria innocua # 1 872 1 870 879 919 55.0 0 MKKLNSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN HRITSSQKSIRTNDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPDWLGL PKEKLYCTVYPKDEDSFNVWVKAGMPADHIVKLEDNFWDIGEGPCGPDTEIFYDRGQENN DVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERVLSILQD APTNFETDLFLPIIHTTEEMTPGKKYGENKEDTTAFKIIADHVRAVSFAIADGALPSNSG RGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENVIQNEEE RFQSTLDTGLTLLDDLIDKAKKSKDKTISGKDAFKMFDTYGFPYELTFESAQDAGLKVDK KGFDAEMAAQKERARKARGDLQSMGRQDVTLMNIKDKSVFERDTYEEPHAKLVDIVVDDK LVDKADGEHATLVFDKTPFYAERGGQVADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVD LILPVEKGQEYVLKLDKERREGLRHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFD FTAMEPMTKRELKTVEELVNQKIWEAIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQ MGDFSSEFCGGTHVDNTNQIGIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDI QEEVKATKPDNIVDKIDSLESDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAA TADVNGMNDLRELADNWKSGNKSDVLVLAAENAGKANMIIALGQKALDKALKAGNLIKIA APIFGGGGGGRPNMAQAGGKNPAGLNDAIKAVIDEISKN >gi|256541343|gb|ACPV01000131.1| GENE 41 41106 - 41363 466 85 aa, chain + ## HITS:1 COG:BH1268 KEGG:ns NR:ns ## COG: BH1268 COG4472 # Protein_GI_number: 15613831 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 85 1 86 90 109 68.0 2e-24 MSSLDKTMHFDFNQNKGKNVYDTLQDVYNALEEKGYNPINQIVGYLLSGDPAYIPRHNDA RNLILKHERDEIIEELVKSYLGKNK >gi|256541343|gb|ACPV01000131.1| GENE 42 41363 - 41791 386 142 aa, chain + ## HITS:1 COG:SPy2113 KEGG:ns NR:ns ## COG: SPy2113 COG0816 # Protein_GI_number: 15675863 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Streptococcus pyogenes M1 GAS # 1 137 1 136 139 165 62.0 2e-41 MRLLGLDVGSKTVGVAISDELGITAQKLETIQIDESRYNFGMRPLKKLVRQYEVDGFVLG LPKNMDGTSGSSVARSKAYGKRLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK QVIDQMAAVLILQNYLDLHRKD >gi|256541343|gb|ACPV01000131.1| GENE 43 41793 - 42104 360 103 aa, chain + ## HITS:1 COG:BS_yrzB KEGG:ns NR:ns ## COG: BS_yrzB COG3906 # Protein_GI_number: 16079792 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 11 98 5 90 93 73 47.0 1e-13 MAAQVNGDDQDRQITLIDDQGNEELYEILFTFHSDDYDKSYVLLYPAAVGDDEDIEVQAF SYDADDAGDVTSSDLHEIESDDEWDMVQGVLNTFLDDDRLSGK >gi|256541343|gb|ACPV01000131.1| GENE 44 42162 - 44519 2302 785 aa, chain + ## HITS:1 COG:BH3106 KEGG:ns NR:ns ## COG: BH3106 COG1193 # Protein_GI_number: 15615668 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus halodurans # 3 785 2 785 785 591 44.0 1e-168 MNKKILEILEFGEITKRLSKLAITGPAKKEAEELLPSGDFEQVQNELKQTLALTNLLRIE GQLPLTDFQDVRPSTKRLSMKANLNAKELGNLLLVLSLAHEINDFLAEIDPNKLDLTAID AILDQLDVPDLLFRELKKSVDYDGEVLDTASHELARLRHDIRSNEEEIKNKMDAYTKGNS SKYLSEQIVTIRDDRYVIPVKQEYRAKFGGVVHDQSASGQTLFIEPEAVLNLNNRQQNLI AQEKQEIRNILKHLSNLAREEITSLNNIAAALTGLDFLQAKAKLAKEMKASEPRLTQDHS LNLLKARHPLIDPEKVVPNDIRLGGEFDTMLITGPNTGGKTITLKTAGLLQLMAQSGLFI PAEEGSKVGVFKQVYADIGDEQSIEQSLSTFSSHINDIIAIMKNVDSETLVLIDEIGAGT DPEEGASLAISILDFLRKKDAKIMVTTHYPELKLYGYNRPRTTNASMEFDLKTLSPTYHL QIGIPGHSNAFAIARKLGMREDVVKNAQNLMSDEDSDINKMITKLNTQTKAATVARNRLQ TSLDRSQKLEQKLQQALDWYNQRVQKQLDFAQERANEVVAKRRKKADEIIAQLEKQKNMG VKENKIIEAKGELNSLERQANNLAHNKVLQREKRRHHVSVGDRVKVLSYGQTGTITKKLS EHEYEVQMGIIKVKVSDRDIERIEKGESTKPRQTVRATSAVRRSNAHSELDLRGQRYDEA MTNLDRYIDSVLLAGLDTVTIIHGIGTGAIRKGVWQYLRSSNHVKNFNYAPANEGGNGAT IVQLK >gi|256541343|gb|ACPV01000131.1| GENE 45 44602 - 44913 484 103 aa, chain + ## HITS:1 COG:lin1196 KEGG:ns NR:ns ## COG: lin1196 COG0526 # Protein_GI_number: 16800265 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 1 101 1 102 103 121 50.0 4e-28 MVEAINDQNFEEETKNGVALVDFWATWCGPCKMQSPVIDQLSEERQDVNFYKMDVDQNQD TAKNLGIMAIPTLIVKKDGNIVDRITGYTPKEKLNQILDQYAD >gi|256541343|gb|ACPV01000131.1| GENE 46 44967 - 45341 430 124 aa, chain - ## HITS:1 COG:L153973 KEGG:ns NR:ns ## COG: L153973 COG1970 # Protein_GI_number: 15674083 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Lactococcus lactis # 1 119 1 122 122 124 58.0 4e-29 MIKEFKEFISRGNVMDMAVGVIIGAAFTAIVQSLVKNLINPLLGIFAGKIDFSNLVFKVG DATFKYGSFINSVINFLIISFVVFLMIKALNRVMPKKEKEAGPTEADYLEEIRDLLKKQV NQNK >gi|256541343|gb|ACPV01000131.1| GENE 47 45430 - 45852 478 140 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00421 NR:ns ## KEGG: LCRIS_00421 # Name: not_defined # Def: hydrocarbon binding protein, V4R domain # Organism: L.crispatus # Pathway: not_defined # 1 140 1 140 140 256 98.0 2e-67 MNKFMTENTENTNEHVYFINQLYRDFLLPTILGDDDASILYWAGKRIARKYDLSDYDDLV EFFNMAEFGKLEKVKERRSFTTYELSGQTVTDRLNSASKEFSLEGGMIAEAFQKSTSRTT ECEINILDKEKKVQFIARFG >gi|256541343|gb|ACPV01000131.1| GENE 48 45929 - 46735 803 268 aa, chain + ## HITS:1 COG:L0120 KEGG:ns NR:ns ## COG: L0120 COG0796 # Protein_GI_number: 15673264 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Lactococcus lactis # 1 267 1 266 271 207 41.0 2e-53 MDNRPIGLLDSGLGGLSVAKKVIEKLPNESTVFIGDNAHMPYGDRTKEEIIELVRKSVQF LLEKNVKLIIFACNTATAMAMSTIQAEIDPQIIGVIQSGSLAASRTTKNKKVAVVSTKAT AESHAYAKEIRFRDPEIQVTELAAPKLAPLVEAQKDHETNLKVVKESLTPLQGKDFDTLI MGCTHYPLIQKEFKEAINDKNVTILDPADQVAQYTFNVMRRDGLFSDGNEKVSHEYYTTG DPTSFDHLARTFMDDATLTSKHVDTENE >gi|256541343|gb|ACPV01000131.1| GENE 49 46735 - 47355 370 206 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|71274727|ref|ZP_00651015.1| Ham1-like protein [Xylella fastidiosa Dixon] # 1 194 1 191 200 147 43 2e-34 MVKEILFATGNQGKAKELKEAFKQAGVNVEIKTNADLDNPPHPIESGHTFEANAKIKAHE LANFSKLPTIADDSGLIVDALNGEPGVRSARYAGEAHNDAKNNAKLLAELGGVPDEKRTA KFWTTIVVSMPGEFDKDLVVSGTCSGRILAAPCGEDGFGYDPLFYIPEKEKTFAQMTTDE KNELSHRGNAVRKLLQELPAWLEQFD >gi|256541343|gb|ACPV01000131.1| GENE 50 47545 - 48423 342 292 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00424 NR:ns ## KEGG: LCRIS_00424 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 292 29 322 322 391 72.0 1e-107 MNKKDNVYGQKYRKLRVLHHISLVNAAKNVTNKSTLAEWEKGKDNLSWCKVIQLLFNIHI QPIEFLEDSVSSQLYSAITNIAVAYRRNDMQQLIIIFKENLKKYEGDTKSKDYMFQAAIA ANFYEDLSEHNVCPSILKDKIILYFSNIIDNKNFWCYEDIFYFGLITQLLDARHLHGFSL KLLEYIEKNPIDSKVWNELAINALLNADFSLMKKDLKKAEELYNRLDILEAIDNYAELII RKKFLESLIQYLKNNSNVEIFFLFRCLDFLDLTNMKLDFESAFLQIKKIYNK >gi|256541343|gb|ACPV01000131.1| GENE 51 48584 - 49228 530 214 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00425 NR:ns ## KEGG: LCRIS_00425 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 214 4 218 218 229 56.0 5e-59 MFLPKKIIVSSLMMATLVGFSSLAVDNESVSATSYDNGTQENIEELIPTAHHLFTEAEIN SFSELITVKNGEYQVDQNRANQVSLRKVQLANQFVSQVNETKRDLRLYGVDLAHPHHNYF TYKDFSWGTRYYFSTNAAVTRMQKVLRNGNAVMGGASIVGGAIGGVIPALAGSVVANHFS NMAADLGDYNNAHRNKQIYMDVNWTGGYSFHIWH >gi|256541343|gb|ACPV01000131.1| GENE 52 49244 - 49513 124 89 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293379869|ref|ZP_06625987.1| ## NR: gi|293379869|ref|ZP_06625987.1| hypothetical protein HMPREF0891_1107 [Lactobacillus crispatus 214-1] # 39 89 1 51 51 72 98.0 1e-11 MALISIAVLALIVMIITCLPVTQRYFYKYLGKIGYWSLLIIFIIYLLIDIWLWLRRPYKT ADFWLTFSSINIAGIVALVKTYFDIKKLK >gi|256541343|gb|ACPV01000131.1| GENE 53 49583 - 50437 709 284 aa, chain - ## HITS:1 COG:SPy1897 KEGG:ns NR:ns ## COG: SPy1897 COG0668 # Protein_GI_number: 15675710 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Streptococcus pyogenes M1 GAS # 19 269 20 269 281 159 36.0 7e-39 MKIPTHINIQKIEIDWSKISQNLLSIIWQLAITSLIFYLLSHFGHKIINNYLAKHNTVKN KRTRTITALINSVFQYTLIFFYLFGILSILGVPVGTLLASAGIFSLALGMGAQGFVSDLV NGFFILSEDQFDVGDLVQIGTNVGTVVQLGLRTTRLKGSDGSIIFIPNRNITIVQNLAHG GVALDINLDLDTKNDIDEVNKLIKECNRKIQPEKKTIVSGPTIVGVTEQTGKKFVYSIHF QVKPGKQSAVRNLYLSKYIEILQKNKIEFADTSLPAKTIAKSST >gi|256541343|gb|ACPV01000131.1| GENE 54 50546 - 50971 411 141 aa, chain + ## HITS:1 COG:SPy0587 KEGG:ns NR:ns ## COG: SPy0587 COG4768 # Protein_GI_number: 15674673 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Streptococcus pyogenes M1 GAS # 11 137 9 133 135 65 32.0 2e-11 MTISYGALAGLIAAIAFLILVLFTIPMLIRTAKLLKETSATIQTTNESMKKISEDMDGLM DQTSDLLDKTNDLMTDVNGKMKTLDPVVKAAADLGESVSELNDSSKKIAKRFSSNHLSRT GLISSIAATAFARRKRRRGEN >gi|256541343|gb|ACPV01000131.1| GENE 55 50989 - 51357 575 122 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00428 NR:ns ## KEGG: LCRIS_00428 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 122 1 122 122 145 100.0 3e-34 MKKFASFLLGAVAGCAAGFLAGSLLVSDEQVDDVKNKIKDNDKLQDLKKKYDNGTEIVKN QLASFPKNVEDDSELKDFDDIVIDDSNKDDDDSENAEESVNDLNNAEKDDTDAASTSEKP QA Prediction of potential genes in microbial genomes Time: Wed May 25 05:58:41 2011 Seq name: gi|256541342|gb|ACPV01000132.1| Lactobacillus crispatus 125-2-CHN cont1.132, whole genome shotgun sequence Length of sequence - 9292 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 5, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 33 - 1139 1434 ## COG0006 Xaa-Pro aminopeptidase - Prom 1167 - 1226 4.2 + Prom 1073 - 1132 6.3 2 2 Tu 1 . + CDS 1290 - 2291 1245 ## COG1609 Transcriptional regulators + Term 2302 - 2342 7.3 - Term 2297 - 2324 0.1 3 3 Tu 1 . - CDS 2333 - 3703 939 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Prom 3861 - 3920 3.4 + Prom 3712 - 3771 3.7 4 4 Op 1 . + CDS 3817 - 4137 409 ## LCRIS_00432 hypothetical protein 5 4 Op 2 2/0.333 + CDS 4153 - 5535 1229 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 6 4 Op 3 1/0.333 + CDS 5528 - 6118 584 ## COG4470 Uncharacterized protein conserved in bacteria 7 4 Op 4 3/0.000 + CDS 6118 - 6888 863 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 8 4 Op 5 . + CDS 6885 - 7493 343 ## COG4478 Predicted membrane protein + Term 7498 - 7528 1.2 - Term 7221 - 7266 3.1 9 5 Op 1 . - CDS 7505 - 8155 489 ## COG0586 Uncharacterized membrane-associated protein 10 5 Op 2 . - CDS 8165 - 9157 209 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 - Prom 9196 - 9255 5.4 Predicted protein(s) >gi|256541342|gb|ACPV01000132.1| GENE 1 33 - 1139 1434 368 aa, chain - ## HITS:1 COG:L96847 KEGG:ns NR:ns ## COG: L96847 COG0006 # Protein_GI_number: 15673631 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Lactococcus lactis # 3 364 4 362 362 375 50.0 1e-103 MNLDKLQQWLQDSNNDLAYISNPITISYFTGYSMEPHERIFALIVLKDAEPFIFCPALNV EEAKASAWDGDVIGYLDSENPWNIIATNVKKRTHDTHNWAIEKDDLSVAHYQLLRGEFPN ASFTNDVSPFIEKLRLYKTPEEIKKLQGAGAEADFAFKIGFDAIRTGVTERSIAGQIDYQ LKIQKGVMHESFETIVQAGKNAANPHLGPTMNTVQPNELVLFDLGTMHDGYASDSSRTVA YGEPTAKQREIYEVDREAQQAAIEAAKPGITAEELDSVARGIITKAGYGEYFIHRLGHGI GKNVHEYPSIVQGNDLVLEEGMCFSIEPGIYIPGFAGVRIEDCGVVTKDGFETFTHTDKD LKVLPLKD >gi|256541342|gb|ACPV01000132.1| GENE 2 1290 - 2291 1245 333 aa, chain + ## HITS:1 COG:lin1640 KEGG:ns NR:ns ## COG: lin1640 COG1609 # Protein_GI_number: 16800708 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 6 322 3 323 335 295 51.0 9e-80 MHKQEVTIYDVAREAKVSMATVSRVVNGNSNVRKETRDRVLEVIKRLHYQPNAVAQGLAS KRTTTVGLIVPDLTNLYFAELSKGIDDIALLYKYNIIITSIENRLMKEDQVIQSLLNKQV DGVIYMSNRLSDAAADAFKRTDTPVVLAGTKDNRDDFASVTIDYKKADTEALNLMYHDGK KHLGIVVGDQDAVVNSENRIPAYEEFMEENDLGTPRIYTDIKDYSDGYNLYPQLVKDGVD GVIVTRDISSVGILNSAMDAGKKVPEDLEIVTASATQLASVVRPALTTIKQPLYDMGAVA MRMLTKLMNNEEVDDTHIVLPYELVKKQSTLNQ >gi|256541342|gb|ACPV01000132.1| GENE 3 2333 - 3703 939 456 aa, chain - ## HITS:1 COG:lin0625_2 KEGG:ns NR:ns ## COG: lin0625_2 COG0584 # Protein_GI_number: 16799700 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Listeria innocua # 28 257 1 224 243 87 27.0 7e-17 MKFKSRLVWVLFFSLVFFINSGFTVVGHRGDPIKYPEETIQADDSAFNSGADYVELDLQL SKDGVPVIAHDDDLFRVTHTHAIVSQNNFTALKQLQYDNGEHVMSLSELFKHYQNKPNTK FVLETKIDHGLNPSYELEDKIAQIVKKYHMQKRIMIHSFSAASLFHFRKIMPEAYLILIV GSLKRINFSNLPQVNAINASSDIVQEHPFLIHWLHKLHKQLFVWAEMDESPALWHWLINR NVDGVVTNYPATGFKYKLAKSGTKKYAINRTGIYFGKTKAATMMNPYVRIKEKKYVQPGQ KVNVTYGVRVDDRLFYQIAEKTFISAEFVNFDLTKRDIAPYQNKKIIAKPNQKVTIYRYP DNQAKTQQKLPANQLLKIQNFNGSPKNMWIYTKLGWVKAKDILFYGFFSQDDFIDYQSLP RVSQYTNLVLLPYNPNQAIAPTTFTQKLQQINKIIY >gi|256541342|gb|ACPV01000132.1| GENE 4 3817 - 4137 409 106 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00432 NR:ns ## KEGG: LCRIS_00432 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 106 1 106 106 193 100.0 1e-48 MEQLDLIEEVTRNDGSRYYEISNIDQNGIAELAADHGLIKKVKILQLNIPRTKALIAYEK YINDTYDLQTLTNESDWKNPKWVEWDKPKGKILDAYNMILKANRIG >gi|256541342|gb|ACPV01000132.1| GENE 5 4153 - 5535 1229 460 aa, chain + ## HITS:1 COG:lin2502 KEGG:ns NR:ns ## COG: lin2502 COG0737 # Protein_GI_number: 16801564 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Listeria innocua # 1 450 2 457 463 298 34.0 1e-80 MEQLRILHTNDLHSHFEHFPKIGRYLKKAQADQSVDGIYTFDAGDFMDRSHPLTDATEGQ ANIKLMNGFNYDAITIGNNEGISNPHWVLEHLFDHADFPTVLANLREEDESMPKWAVGHM FLTTKKKTRIALIGLTAAYPMTYGPNHWHVKMLGDSMDHELAQIEGKYDVLILLTHVGLK MDRWLAKHYPQINLIVGGHSHDLIEHGEKVGHTWITQTGKWGNYVGDIHLELEDHHVIKV VPRTISTASMPEEPEDKAMIQGYYDEGKRLLSERKVANLPEKFADDKVAAVQVSLDAIAD FAKTDLAILSSGLFLPPFKSGIITQYDLQNALPHPMHVVRSTLKGYDLWRLVMEIEKNRH YLDHFPLQGMSFRGKIFGQMYYKGIKVDMRRRVVYVNGHEIDPQKEYKIACLDHYVLVPF FPTLAIVGENEFLFPQFLREVVGKYLAEKYPLTARSEKDD >gi|256541342|gb|ACPV01000132.1| GENE 6 5528 - 6118 584 196 aa, chain + ## HITS:1 COG:SA0786 KEGG:ns NR:ns ## COG: SA0786 COG4470 # Protein_GI_number: 15926514 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 27 110 2 86 127 67 44.0 1e-11 MTEENKFEQEQPIRHPLADVGQDGKSIKIGAQLYSIIVNERDALDLESLRKKYDPYLDQY DYLVGDVSSEHLRLKGFYKDGARTAIDKKEMAIVDYLTEYCNPGGPYFILELTHPVHYYQ HQRTKIRRSRERRERDFGKNERYHARRRNYRKNKNENNPFKKRRVHQTKFKKKQSIAVKK EFGRHYSFIIKKRKGN >gi|256541342|gb|ACPV01000132.1| GENE 7 6118 - 6888 863 256 aa, chain + ## HITS:1 COG:lin2500 KEGG:ns NR:ns ## COG: lin2500 COG0647 # Protein_GI_number: 16801562 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Listeria innocua # 1 256 1 254 255 225 45.0 6e-59 MKDYRVFLIDLDGTVYRGKETVESGVRFVHRLVQAGKDYLFLTNNTTRTPQMVVDKLKGH GIETDTDHVYTPSMATASYILQREHKEKIGLYIIGQIGLWRELLQHPEFELNEENPDYVI VGMDTDLTYHKVRVASRAIRRGATFIGTNADMNLPAEDELIPGNGSQCAFVAAASGVEPL YIGKPESIIVKMALDKVGYSKDEALLVGDNYDTDIKAGFNSGVDQLLTLTGVTTKVDIAD KRQPTILVNNLDEFEL >gi|256541342|gb|ACPV01000132.1| GENE 8 6885 - 7493 343 202 aa, chain + ## HITS:1 COG:L157321 KEGG:ns NR:ns ## COG: L157321 COG4478 # Protein_GI_number: 15673126 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 12 195 9 190 205 96 36.0 4e-20 MITKNNIFSLIYHFLFAVSSSVIGAIVASWPLLFIFMIVQKTYETVHMSLFKVMHNYNQL MFYLLWPFKKQLKMDNFPTSANAAEHFAECKHLFILTLLVFIICIIVHFVFKRQKKKLLL NLDKSVALILLLLPIIIFPFAVTNFDSFFVIFHHILFNNSDWLFDPNTDPIINVLTEGFF ASCFAVAGVIYELYFAEKLLRK >gi|256541342|gb|ACPV01000132.1| GENE 9 7505 - 8155 489 216 aa, chain - ## HITS:1 COG:lin0035 KEGG:ns NR:ns ## COG: lin0035 COG0586 # Protein_GI_number: 16799114 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Listeria innocua # 3 212 7 216 219 195 53.0 5e-50 MSLIDFILHIDDHLITIVNQFGGWSYLILFAIIFIETGLVVFPFLPGDSLIFAASAMAAN PKYGLNIWLVYLIVAFAAIIGDSINYEIGAWSTRAGEKHSWFNKLINQNNRLAAEKFFER HGPITIVIGRFIPFIRTFVPFISGGSKMHYGKFITYNILGGLLWTGLFTIIGFFFGNIPF VKDHFSMIVIAIILVSVVPIAIVAIKKKISLKKEFH >gi|256541342|gb|ACPV01000132.1| GENE 10 8165 - 9157 209 330 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 18 304 2 292 306 85 27 2e-16 MLKLIHHYFEEVIKIKKFDLTIIGGGPVGLFAARFAHLHGLKTVLFDSLSETGGQPQMLY PFKKIKDIPAYDSITGTELIDNLRHNLTDTTIFTNHKVENVTKQKDGFIIDDIVASRSIL ITTGAGAFKPKALPLSMDDDTQKRIHYFIKDPQKFVGQTVGVFGGGDSALDLALELANYA NVKIIHRRNQFRGLESNVKKLKSLKNVEILTPYLPKQINLVDNQLNVNLKEMGKDSLTNI KLDQAVVAYGFKANNRFVKKWGIDLAGAQIKVNSTMQTNIAGVYAAGDVVTYPGRVPLIA LGFGEAQIAITAIMRDLFPEKTLTIHSTSF Prediction of potential genes in microbial genomes Time: Wed May 25 05:58:44 2011 Seq name: gi|256541341|gb|ACPV01000133.1| Lactobacillus crispatus 125-2-CHN cont1.133, whole genome shotgun sequence Length of sequence - 1029 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 812 658 ## COG0208 Ribonucleotide reductase, beta subunit - Prom 941 - 1000 7.0 Predicted protein(s) >gi|256541341|gb|ACPV01000133.1| GENE 1 2 - 812 658 270 aa, chain - ## HITS:1 COG:SPy0425 KEGG:ns NR:ns ## COG: SPy0425 COG0208 # Protein_GI_number: 15674552 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 3 270 5 272 337 427 75.0 1e-120 MGYYDHSQSPVEFAYNNNGKNMRAINWNDIKDEKDLEVWNRVTQNFWLPEKIPVSNDISS WNQLSDDWQQLITRTFTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARS YGTIFSTLCTSEQIEEAHEWVVNNDALQARAKAVIPYYTGNDPLKSKVAAAIMPGFLLYG GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD FLDKLIDLEKKYLHELYDDFDLVDDAIHFS Prediction of potential genes in microbial genomes Time: Wed May 25 05:58:47 2011 Seq name: gi|256541340|gb|ACPV01000134.1| Lactobacillus crispatus 125-2-CHN cont1.134, whole genome shotgun sequence Length of sequence - 7563 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 3, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 - CDS 13 - 1179 1132 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase 2 1 Op 2 1/1.000 - CDS 1179 - 2390 1055 ## COG1257 Hydroxymethylglutaryl-CoA reductase 3 1 Op 3 . - CDS 2387 - 3550 1272 ## COG0183 Acetyl-CoA acetyltransferase - Prom 3583 - 3642 7.5 - Term 3604 - 3653 10.2 4 2 Op 1 . - CDS 3661 - 4563 1185 ## COG1210 UDP-glucose pyrophosphorylase 5 2 Op 2 2/0.000 - CDS 4624 - 5547 416 ## COG1295 Predicted membrane protein 6 2 Op 3 . - CDS 5556 - 6383 923 ## COG0024 Methionine aminopeptidase - Prom 6421 - 6480 9.7 + Prom 6381 - 6440 7.3 7 3 Op 1 . + CDS 6596 - 7042 559 ## COG0716 Flavodoxins 8 3 Op 2 . + CDS 7035 - 7562 208 ## LCRIS_00625 cell wall teichoic acid glycosylation protein Predicted protein(s) >gi|256541340|gb|ACPV01000134.1| GENE 1 13 - 1179 1132 388 aa, chain - ## HITS:1 COG:lin1454 KEGG:ns NR:ns ## COG: lin1454 COG3425 # Protein_GI_number: 16800522 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Listeria innocua # 1 384 1 385 388 348 47.0 1e-95 MQVGIDQIGLFTPDKYVDMVDLANARKQDPNKFLVGIGQREMSVADITQDAVSMGINATL KFIDKIDKNKVGLLIFGTESSIDQSKSASLFVKTALKLKPEVRTFEVKEACFGLTAALMM ARDFVRVHPEQTAIVIGSDIARYGVNTAGEVTQGAGSVAMLIKADPSILALNNGHSAYSE DINDFWRPNYSRTALVDGKYSTQVYLDFFKKTFTDYKKQKGLKTSDFDAITYHLPFTKMG MKANNIAIEGQDQATMIKLERSFAAAKQLSSRVGNIYTASLYMSLLSLLENGELPAGSLI GLFSYGSGAMAEFYSGKLVEGYEKQIDPTADQAMLDRRKKLTVKQYEDVFNTALLDPEDG LELTSDDEVGTWYFAGTKDHIRQYRVKE >gi|256541340|gb|ACPV01000134.1| GENE 2 1179 - 2390 1055 403 aa, chain - ## HITS:1 COG:SP1726 KEGG:ns NR:ns ## COG: SP1726 COG1257 # Protein_GI_number: 15901559 # Func_class: I Lipid transport and metabolism # Function: Hydroxymethylglutaryl-CoA reductase # Organism: Streptococcus pneumoniae TIGR4 # 6 400 26 423 424 254 41.0 2e-67 MKFYQLEPEARRKLLQDEGIALGQIDDTVLRRLDELSENVVGQLRLPLGVVQNLIVNGQK YWVPMAVEEPSVVAAANHGASIFARNGGVTASSDRQGIYGQIVLKVNNSFSLIELEKEFP KLVELVNQKFTSLVRHGGGVKKITAVQKENLLYLKVLVDPAEAMGANKTNSILEFLAAKL ENYAGVDEKLFAILSNYPSQLATAKVKIDPQTIGGMQVAQRVALLGKIGIDDPYRAVTNN KGIMNGADAVLIATGNDYRAIEAATAVLANHDGQYRSLSKWTMQGSYLVGELTLPMAIGV VGGSIKARHDVRQSFAILGQKITSKTLAEIIVSVALANNLAALLAISTVGIQAGHMKLQA RNVVTELTDDEHERKQLLAAMISEKNYSESHAKELLAKIRKEK >gi|256541340|gb|ACPV01000134.1| GENE 3 2387 - 3550 1272 387 aa, chain - ## HITS:1 COG:CAC2873 KEGG:ns NR:ns ## COG: CAC2873 COG0183 # Protein_GI_number: 15896127 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Clostridium acetobutylicum # 1 384 1 390 392 346 47.0 4e-95 MKDIYIVAAKRTPFGKYRGFFKDASAIDLGVMALKGTMKAGNIKPADVQALFMGNVLDTG LGENMARQVALHSGMSEASAAVTINEVCGSSLKALRLAQGQMELGDLDLVAVGGSESMTN APYFVKKENKNDPADHLVSTMLNDGLMDAFSGKHMGITAENVAEKYHVSRQDMDEFALQS HKKAAAAVKSGFFDNEILDVEIDGQSLDHDEPIRPDTTLEALSNLKPVFKADGEVTAGNS SPLTDGASMLVLATKEKMKELGLTPIAKLGEFAEAGFDPALMGYTPYYAVKKLLKKTGRN FDDYDIIELNEAFAAQSVAVARDLQIPTDKLNIMGGAIALGHPLGATGTRLVASAISGLK KRKGRRALVTLCIGGGQAIAYEIENAE >gi|256541340|gb|ACPV01000134.1| GENE 4 3661 - 4563 1185 300 aa, chain - ## HITS:1 COG:L177590 KEGG:ns NR:ns ## COG: L177590 COG1210 # Protein_GI_number: 15673321 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Lactococcus lactis # 2 298 12 309 313 392 68.0 1e-109 MKVRKAVIPSAGLGTRFLPATKALPKEMLPIVDKPTIQFIVEEAKKSGIEDILIVIGKNK RPIEDHFDSNPELEQDLEEKGKKELLRLTEGITDLGVNLYYTRQPHPAGLGDAIFRARSF VGDEPFVVMLGDDLMEDKVPLTKQLIDRYNKTHASTIAVMPVPHEEVSKYGVIEPENEIM PGLINVKSFVEKPDIDKAPSDYAIIGRYLLTPEIFDILANQKPGRGGEIQLTDAIDTMNK TQRVFAHVFKGERHDVGNKEGYLETSIEYGLKHPEIKEQLRAYIMQLSKKFEAEGKQNKK >gi|256541340|gb|ACPV01000134.1| GENE 5 4624 - 5547 416 307 aa, chain - ## HITS:1 COG:lin1818 KEGG:ns NR:ns ## COG: lin1818 COG1295 # Protein_GI_number: 16800885 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 12 280 14 276 289 121 29.0 2e-27 MKNGKNHFGLKIGQFISTLRTTLSQGEIFASSIIIAYYILFSIFPIIIIIGNVLPLFHID TAPIAEYLNLVFPDQVSKFIMPIINSLLKTTSTGYISFGIVFAVWSLSNMVNAIRLGENR LYGVHQVELKLSMLNFLWTRTITFIFTGLMILVFTIATLALVFGQQVLNFLGPIFQLPLN EISKIFSYRYPVLILVMMLALWYLNYVLPNIKLKKRVIWPGVFVTVVGWLALSFLFSFYL HHFPITWENYGIVGTFIIFMLWLNIAAVLFLFGVGVNAAIVRNRVGQVEYSAGRIASYIQ KKRRKTK >gi|256541340|gb|ACPV01000134.1| GENE 6 5556 - 6383 923 275 aa, chain - ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 261 1 252 252 260 52.0 2e-69 MITIKSIRELKGMQASGHLLATMFEGLRDVIKPGISTWEIEEFCQDFVSSRGGRLSEQGF EGYKYGTCISVNDEIAHQTPRKDRILKEGDIVKVDVTCNLNGYESDSCTTYPVGEISEAD KKLIEVTKKAMYLGIDQAVLGNRIGDIGAAIQHYVEDENHYGDVRELIGHGIQPSIHEDP EVPHWGKAGHGLRLREGMTITCEPMVEAGGDWHIDQRTVDDPNDDWVYYATPDGSNAAQF EHTFAITKDGPKILTLQHPYDGLEKYIPHFDEMDD >gi|256541340|gb|ACPV01000134.1| GENE 7 6596 - 7042 559 148 aa, chain + ## HITS:1 COG:SPy0721 KEGG:ns NR:ns ## COG: SPy0721 COG0716 # Protein_GI_number: 15674777 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pyogenes M1 GAS # 3 147 4 147 149 103 40.0 2e-22 MKARIVYASMTGNDEDMADILEEDLQDYGFDVETSDVGFTDANDYLDSDLCIFITYTYGE GVMTDELADFYGELKDLDLTGKHFAVMGSGDKTYGEHFCENVFDYEKEFKDCGATEITKP VTIENAPDDDAVAAIDQAAKEMADKLNG >gi|256541340|gb|ACPV01000134.1| GENE 8 7035 - 7562 208 175 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00625 NR:ns ## KEGG: LCRIS_00625 # Name: not_defined # Def: cell wall teichoic acid glycosylation protein # Organism: L.crispatus # Pathway: not_defined # 1 174 1 174 193 298 97.0 6e-80 MANNKKDVTAVDQAQIRRLGQKLIKRHRNLWVYMVFGFVAALINTLVFMVLHSWWHNVMV ISNTIAFIVSNLASFWFNQKAVFINNVDHEHSTWHKLIVFFTYRVISLIPDTLIMLVGLS WLHLNALLVKIIDQILVGVFNYLTTRSVFQKQEHTMIERAKMRIQEQKNKRDSKN Prediction of potential genes in microbial genomes Time: Wed May 25 05:58:52 2011 Seq name: gi|256541339|gb|ACPV01000135.1| Lactobacillus crispatus 125-2-CHN cont1.135, whole genome shotgun sequence Length of sequence - 9204 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 6, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 23 - 1165 1275 ## COG0381 UDP-N-acetylglucosamine 2-epimerase - Prom 1288 - 1347 5.5 2 2 Tu 1 . + CDS 1271 - 1459 139 ## LCRIS_00623 putative protein without homology + Term 1496 - 1534 5.2 - TRNA 1530 - 1602 55.3 # Arg CCT 0 0 - Term 1483 - 1520 5.1 3 3 Op 1 . - CDS 1652 - 2980 1079 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 4 3 Op 2 . - CDS 2977 - 4212 1261 ## COG0513 Superfamily II DNA and RNA helicases 5 3 Op 3 . - CDS 4215 - 4922 413 ## LCRIS_00620 lyzozyme M1 (1,4-beta-N-acetylmuramidase) - Prom 4988 - 5047 6.8 + Prom 4851 - 4910 6.0 6 4 Tu 1 . + CDS 5031 - 6332 1402 ## COG0531 Amino acid transporters - Term 6329 - 6359 -0.7 7 5 Tu 1 . - CDS 6384 - 8264 2475 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 8350 - 8409 10.9 + Prom 8385 - 8444 8.9 8 6 Tu 1 . + CDS 8597 - 8908 308 ## LCRIS_00617 putative protein without homology + Term 8979 - 9022 4.0 Predicted protein(s) >gi|256541339|gb|ACPV01000135.1| GENE 1 23 - 1165 1275 380 aa, chain - ## HITS:1 COG:lin2681 KEGG:ns NR:ns ## COG: lin2681 COG0381 # Protein_GI_number: 16801742 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Listeria innocua # 1 379 1 377 379 474 62.0 1e-133 MRKIKVMTVFGTRPEAIKMAPLVLKLKKDDRFEEVTVVSAQHREMLDQVLDIFKIKPDYD FNIMHQNQTLEEITSKVMIDLSKVIKEEKPDIVLVHGDTTTSFAASLATFYQQTTLGHVE AGLRTWNKYSPYPEEMNRQMTDDLADLYFAPTELSKANLLKENHHSDFIFVTGNTAIDAL AQTVQQDYHHEVMDAITPGNKVILVTMHRRENQGEPMRRVFKVMRQVIDSHPDVEIIYPV HLSPRVQKVANEVLGGDPRIHLIEPLDVVDFHNLAKRSYFIMTDSGGVQEEAPSLGKPVL VLRDTTERPEGVKAGTLKLVGTEVDKVREEMLALLENKNEYDRMANAKNPYGDGHAADRI MDDIYYYFNQDSESKPKDFE >gi|256541339|gb|ACPV01000135.1| GENE 2 1271 - 1459 139 62 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00623 NR:ns ## KEGG: LCRIS_00623 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 62 1 62 62 79 98.0 3e-14 MNSSLLLLITTGLIILIGTFCLVFGMDKNRPAKTRKYLLYTALICVFLVWGLITAIMLQP LG >gi|256541339|gb|ACPV01000135.1| GENE 3 1652 - 2980 1079 442 aa, chain - ## HITS:1 COG:lin2856 KEGG:ns NR:ns ## COG: lin2856 COG1455 # Protein_GI_number: 16801916 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 4 429 4 446 454 365 46.0 1e-100 MIRLVRWLEDYVLPLASRWGQIRWLVALRDAFVSLMPITMAGSLAVLIKSLIEAAHDHLG WYAFAFAMQPLVAISNLVWRGTFSLFAFFLALALGYQLAKAFEGNRLAASIVALSSFALS IANIAKIKFHGDNVTLHNAFDISQFSTTGLFTAILFGSLGFFIYYACYKARIILHVTSNL PHAEQAAFDSLLPAMIAIFGVGGINYLFQILTGKYFGNWLLTTIQTPLVKWGQGFGTVIV ITLLVQLFWFFGINGIGVLSPILDSIWMTAQNDNITAISNGNIPPYVWVRGSFDVFAWFG GAGGTLMLIVAILMFSKRSDYRTIAKISLAPGIFNIGEPILLGLPVVLNPVYLIPFVLAP LVNVAFSYWVSIMGLVNPVQVAVPSIMPPVIGPFLACNYDWRAIVLSILNMIVALLIWMP FVKAADKIADTNHPKTFFNPQF >gi|256541339|gb|ACPV01000135.1| GENE 4 2977 - 4212 1261 411 aa, chain - ## HITS:1 COG:lin1833 KEGG:ns NR:ns ## COG: lin1833 COG0513 # Protein_GI_number: 16800900 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 12 401 15 408 442 200 33.0 4e-51 MYQEKIKQVLIREHKDQPTLIQKESYDAIRNGASLVGLAKTGTGKTLAYALPSLEKAQPG NANSVVIIAPTTELAVQIRHAINPYIHALGLKGVSLVGAGNRKRQEDNLKKKHPEVVVAT PGRFFDFFSSGRIKVNQIKTLIIDEADDILEFTKMELLSALGQNLGPDSQILLFGATDSE ITRDAEQVFNRHFLLVDVRNEQASATKHYFLQVDNQHKIEFLQRMTKLDHFKGILFFDSN KTMMRFAGIFGHTKTKFELLANEFGKERREKALNDLATGKTKLLLATDLAARGLDIPGLT YVINFDIPSETNTYMHRAGRTGRMNAEGYVVTLGDDHDFRDLKKLLADQLQIERVYFAGY HLTTEKPKLKKEKKQAKEQPIKTSTKKNKTKKRKKRNKNKGYHPHYLKGKK >gi|256541339|gb|ACPV01000135.1| GENE 5 4215 - 4922 413 235 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00620 NR:ns ## KEGG: LCRIS_00620 # Name: not_defined # Def: lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: L.crispatus # Pathway: not_defined # 1 235 1 235 235 422 100.0 1e-117 MKRFQHKYTLPAILTLLILAIAFLLIGFFNFKRQTTLPPDANSSAIGIELNQDIDYVDLH KLQSNGVSFIYLKATQGRSYFDENYLSYRDQILGTNLAFGSEISYSNESTPMQHYRYFFK QVGQNTGSLPILIVPAVTTRSARYLRSMGQFAALLQAAGKRVMVKVDHKYQHYFNPQTLF MSSDSKAPNKLKYSFWCYTTNGRVRNVSGLESQVTMYAYNGTVGQYKQKYGQLTQ >gi|256541339|gb|ACPV01000135.1| GENE 6 5031 - 6332 1402 433 aa, chain + ## HITS:1 COG:SA1270 KEGG:ns NR:ns ## COG: SA1270 COG0531 # Protein_GI_number: 15927018 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 431 7 437 440 344 49.0 2e-94 MKRQISFGQALATVVGSVIGAGVFFKIGTITAQTGSTSMTLFVWILAGIISIASGLTISE IAASLKINGAIKYLDYTYGRVWGFLFGWAQMIVYFPAQIGALSSIFGVQFVSLFGIKARY SNLIAILLVLFLLGINLIGTKFSSKMQSVITILKIIPIALIIIWGLFNPAKIPAPIIPLT VGTGHSFPTAISQGLLSALFAFEGWIVVTNLANEVKNPEKDLSRAIILGLSAITLIYVLI NYTFMTVLPIDQLTNNNNAAFQASMKLFGQFGGKLVTVGILISVYGAVNAFMLTGMRTPY ILAQDNLLPFSNKIGKANIHTGVPVVGAFIVDAIAIVMILLGNFTVLTDMLVFVMWTFNT MLSVAVIILRKREPELKRPFKVPWYPIIPIISVIGGIFIVVSTIINQFVLSIIGIGLTLL GLPTYYYMQKKNN >gi|256541339|gb|ACPV01000135.1| GENE 7 6384 - 8264 2475 626 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 68 610 1 476 484 228 34.0 3e-59 MKSGKYQVKAKGHGSESMPMEVDIDGDKVTSIKVDSSGETKGVADEVFRRLPKTIVENQT LNVDAVSGATISSHGVIDGVAEAIDEAGGDSTEWKNREKPAATKVEDEEITVDVAVVGAG GAGLAAAVRSIQHGERVAVLEKYPQIGGNTSRAGGPMNAAEPEWQSKFKALPGEKQTLED LANTPIKQIDLEYRFDFERLQRQIKEYIDSGTDYLFDSTLLHEIQTYLGGKRTDLKGNEI HGKYALVHELVTNALNSVKWLQDLGVKFDNSQVTEPVGGLWRRGHKPVEPLGYAFIHVLG DWIREHGVDPYLETRVEKLIIEDGKVRGVIATRADSSTLTVHAKAVILTAGGFGANTKMV QKYNTYWPNIADDSTTTNSPAITGDGINLGLEAGADLFGMGFIQLMPVADPKTGELFTGV VTPPANYIMVNKKGKRFVNEFAERDVLAKAVIENGGLIYQIADDKIKDTAYNTTQESLDA QVKAGTLFRADTLEDLAKQIGMNPAVLVKTIQDYNSYVDRGEDPDFHKNVLGLKCEVAPF YATPRKPAIHHTMGGLVIDTKAHVLNKDGQIIDGLYSAGENAGGIHAGNRLGGNSLADIF TFGRIAANTAYEDHQENDAISGASQH >gi|256541339|gb|ACPV01000135.1| GENE 8 8597 - 8908 308 103 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00617 NR:ns ## KEGG: LCRIS_00617 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 103 1 103 103 185 100.0 4e-46 MNSIEQIDTENDTKSLISSFINLIGLAKLTKQVNFKRKSTVSLTMIISWLMSVHFARLSL FRAKSDKRFSVRTARNVLNDGRINWQKLLCLIAARLIGCFKHP Prediction of potential genes in microbial genomes Time: Wed May 25 05:59:07 2011 Seq name: gi|256541338|gb|ACPV01000136.1| Lactobacillus crispatus 125-2-CHN cont1.136, whole genome shotgun sequence Length of sequence - 25595 bp Number of predicted genes - 23, with homology - 23 Number of transcription units - 14, operones - 6 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 16 - 1785 1857 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 1821 - 1880 7.4 - Term 1898 - 1932 3.2 2 2 Tu 1 . - CDS 1958 - 2527 557 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase - Prom 2570 - 2629 11.4 - Term 2582 - 2625 6.0 3 3 Tu 1 . - CDS 2634 - 3992 1451 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 4026 - 4085 5.6 4 4 Op 1 . - CDS 4095 - 4751 684 ## COG0778 Nitroreductase 5 4 Op 2 . - CDS 4823 - 5089 313 ## LBA0610 hypothetical protein - Prom 5121 - 5180 3.4 - Term 5116 - 5155 6.0 6 5 Op 1 . - CDS 5208 - 5693 679 ## COG2190 Phosphotransferase system IIA components 7 5 Op 2 . - CDS 5714 - 6211 402 ## LCRIS_00608 hypothetical protein 8 5 Op 3 3/0.000 - CDS 6198 - 7007 662 ## COG1737 Transcriptional regulators 9 5 Op 4 . - CDS 7069 - 8949 2058 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 9176 - 9235 7.5 + Prom 9473 - 9532 4.8 10 6 Tu 1 . + CDS 9559 - 10365 718 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 10372 - 10433 11.0 - Term 10358 - 10420 4.7 11 7 Op 1 . - CDS 10421 - 11269 705 ## COG4667 Predicted esterase of the alpha-beta hydrolase superfamily - Term 11279 - 11315 4.0 12 7 Op 2 . - CDS 11337 - 13736 2766 ## COG3957 Phosphoketolase - Prom 13791 - 13850 7.5 + Prom 13826 - 13885 11.9 13 8 Op 1 . + CDS 14036 - 14800 472 ## COG1349 Transcriptional regulators of sugar metabolism 14 8 Op 2 . + CDS 14806 - 15165 258 ## LCRIS_00601 hypothetical protein + Term 15211 - 15243 2.3 + Prom 15207 - 15266 4.7 15 9 Tu 1 . + CDS 15287 - 16114 742 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 16159 - 16216 1.1 - Term 16147 - 16204 10.3 16 10 Op 1 . - CDS 16208 - 16933 597 ## COG2188 Transcriptional regulators 17 10 Op 2 . - CDS 16933 - 17859 1060 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 17880 - 17939 4.8 - Term 17883 - 17934 2.3 18 10 Op 3 . - CDS 17941 - 19950 1867 ## COG3158 K+ transporter - Prom 19987 - 20046 8.8 - Term 20038 - 20070 1.0 19 11 Op 1 . - CDS 20082 - 20774 740 ## COG0120 Ribose 5-phosphate isomerase 20 11 Op 2 . - CDS 20774 - 21700 1192 ## COG0524 Sugar kinases, ribokinase family - Prom 21728 - 21787 8.2 - Term 21736 - 21784 6.9 21 12 Tu 1 . - CDS 21790 - 22593 885 ## COG1085 Galactose-1-phosphate uridylyltransferase - Prom 22629 - 22688 9.1 + Prom 22571 - 22630 8.9 22 13 Tu 1 . + CDS 22766 - 24070 1671 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 24100 - 24137 4.1 - Term 24076 - 24132 7.5 23 14 Tu 1 . - CDS 24134 - 25534 1456 ## LCRIS_00592 putative protein without homology Predicted protein(s) >gi|256541338|gb|ACPV01000136.1| GENE 1 16 - 1785 1857 589 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 67 564 1 477 484 132 27.0 1e-30 MTKQTIKAQADGRNGQIDFEIDLENNKISDVKVTKNSETPAIFNQTFGKLKKNIIDNQSF DVDAVSGASLMTQAMLDSGKKALAENNIALDGKKPEVVHEERQLNVDVAVIGSGMAGLMA ASRALSMGKKVVVLEKNGYLGGATILNGSNVVGTGSKVSAELFGETAKKDSPNRLVQDIT RECRGTNYPMLSKLLANNIGKAVDFITEFANLTYQKAETQTVEHSVYRQIEMPSESSYEL VTKVAEAFEKKGGQIILDARVEKLNKDKAGKLVSLTAEGKHQTINVNFKSLVLAAGGWGA RDYQAHKTDIPYYGPMTSTGDYLDFAKNMNLVTRNLDWYKVYPHGLEVEPGIAKLTTYST KEATDMGAIFVNTDGKRIVNESAPYTHFRDAIAEQKGKVAYIVMDQRTWDRFYELMLKYG FTKEEVQSFFDLVGEKSPVLVKGDLKTVAEKAGIDYQTLKETVDNYTEDVKADYDPEFGR DKKFMHEFEGDTYYVIEQKLLFCTTLGGYETTDQMQLLDNDMNPVSNFYAAGEIVGGANG HDSMPSMMNSWSYASGFVAGTTAADNTNYNYFTVSNEQEADAVSGASEA >gi|256541338|gb|ACPV01000136.1| GENE 2 1958 - 2527 557 189 aa, chain - ## HITS:1 COG:lin0251_2 KEGG:ns NR:ns ## COG: lin0251_2 COG0634 # Protein_GI_number: 16799328 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Listeria innocua # 11 182 5 176 179 177 51.0 1e-44 MAKGDNIDQIIDHKLFTEDDIHEMCVRLGKQLTEDYAGKKPVVVGALKGAIYFLTDLTRQ MDVAHQLDFLDVSSYGDGFESTGKVKIVSDLVTDVKDRDVLIVEDIVDTGLTLKFMKEHI MARGAKSVKCCAMLNKEARRTTDVELEYYGSKVGNEFVVGYGLDFLNMYRNLPYVGVLKP EVIQHYANK >gi|256541338|gb|ACPV01000136.1| GENE 3 2634 - 3992 1451 452 aa, chain - ## HITS:1 COG:L84992 KEGG:ns NR:ns ## COG: L84992 COG1253 # Protein_GI_number: 15673816 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 6 427 1 419 430 254 33.0 3e-67 MSPAQIVTNLVATLLIFIVASFFVAAEFALVQTRPSQLEDMLAKGQGNKKKLRRALHMTH NLNEYLSTTQVGTTLVGVVLGWFSADTFATILEDLFHLTPMNDSLIKSVSAILGVVLLTY LEVVLTEVVPKNIAIDKPVPMMMGIVTPLHIFHTIVYPFVWLLNTSSNGILKLMGFTPAD EENEVYSQSEIIKLSRNAVHGGSLDKEDLTYMERAFELNDKVAKDIMTDRTRLSVLDSTD TIAYALKKYLEEGYSRFPVVRDNDKDDVVGYVYAYDIVQQSQIDGNVPVTRIIRTIITVP ESMPIQDILHLMISKHTPIVLVVDEYGGTSGIVTDKDIYEELFGSVKDEIDDVSDDYIIK DKDGQVHVSGKTTLYDFERFFHTDLKAFQDSDIITIGGYMMEHYPNLKKGESIELEGYKF TLDSIEQGFMRWFIVEPIKDKDQKDDQSKDEN >gi|256541338|gb|ACPV01000136.1| GENE 4 4095 - 4751 684 218 aa, chain - ## HITS:1 COG:CC0324 KEGG:ns NR:ns ## COG: CC0324 COG0778 # Protein_GI_number: 16124579 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Caulobacter vibrioides # 1 212 1 213 220 83 28.0 3e-16 MNFKDVYEKEHVTRKFTNRKLQEKTIAGIVKMAQQSPSLLNSQPWRAYVLMGDALSKFKA ASAKKIDDKEVAHEDFASMLSLDWDTYPSRNMATMGASQSFFFRNKLQLFNDANKTMFNA PAIIFLTVPKKSPAWSVFDLGIFAQSIMLLAINRGLGVMPAHSMVSYPELVREYAQIPDD EAVGMAIAVGYIDKNAEINDPKFIPKRVPFNEIYKVVE >gi|256541338|gb|ACPV01000136.1| GENE 5 4823 - 5089 313 88 aa, chain - ## HITS:1 COG:no KEGG:LBA0610 NR:ns ## KEGG: LBA0610 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 85 1 85 88 137 81.0 1e-31 MKRYRPNTKAVIVGIVLMLIGIACWVIKASFIPKGADFLFPIGLLVICLGGLTLTITAFI AMRKNDLAMSAYLKKQAAEKKKQEKSNN >gi|256541338|gb|ACPV01000136.1| GENE 6 5208 - 5693 679 161 aa, chain - ## HITS:1 COG:SP0758_3 KEGG:ns NR:ns ## COG: SP0758_3 COG2190 # Protein_GI_number: 15900652 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Streptococcus pneumoniae TIGR4 # 13 160 4 151 151 139 47.0 2e-33 MFNFFKKKNKGIEVDAVVDGDIMPITDVKDDVFSTKMLGDGYAIKPKDNHIYAPVDGSIS TLFPTKHAIGITNDQGIEFLIHLGLDTVELKGAPFTVNVSQGDKVKKGQPLATMDFQMIT DKGYDDSCIVVYTNMDLIKSVTPIEKGSVEHSQKVQTIELK >gi|256541338|gb|ACPV01000136.1| GENE 7 5714 - 6211 402 165 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00608 NR:ns ## KEGG: LCRIS_00608 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 165 1 165 165 266 99.0 2e-70 MWAISKRKVGNFIDRITESMHLDTKKILTWYSYVLFIAPLLFWAMIALRSGASGQSIRMM IMKQPMIAISTIVAIVDFILGYYMLLNHKQFLINRQTYRFLMGSQMIAQLFVGNLLCVVL AILGFYRARALKKTQDGVSRVIIAISLTAAGLLLASFMLILLLEF >gi|256541338|gb|ACPV01000136.1| GENE 8 6198 - 7007 662 269 aa, chain - ## HITS:1 COG:BS_yfiA KEGG:ns NR:ns ## COG: BS_yfiA COG1737 # Protein_GI_number: 16077886 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 4 264 3 254 254 102 28.0 7e-22 MANLRSMVYDNSHKLNDSEKQIVQYVLNNPRDCSKLSLAKLAKKLYVSESAIFRLCKKLG LSGYSELKFDLVELAESKQKPIKIENNFARELSKVNSDVLKYFKQRDFNSLYRDLDNAGT IYIYSTGWQQELIAQYLAHELFVVGKHATVLPSALEELKAAGRFAQKGDVLFIISFTGDN KTINEEITKLELVNDKFKYVSFTNLKQNKLASLVQHNIYFPTIAFTDDADFKSGKVAFTP AYFLIDLVISEYVAWQQSQGEDVEIDVGN >gi|256541338|gb|ACPV01000136.1| GENE 9 7069 - 8949 2058 626 aa, chain - ## HITS:1 COG:BS_glvC_1 KEGG:ns NR:ns ## COG: BS_glvC_1 COG1263 # Protein_GI_number: 16077887 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus subtilis # 1 451 1 450 452 502 54.0 1e-142 MMQKIQRFGAAMFVPVMLFSFAGIVVALGSLFNNPTLFGSIANPGTTWNSVWDTISAGGW TVFNQEGILFTVGLPIGLANKARGRAAMEAVIAYLTYNYFIGAMLTHWGAAFGIPNFDKI QIVANATNHGLTNIAGIKTLDTSILGALVVALIVVWLHNKYFDKKLPDWLGTFQGSTYVY ALAFFVMIPLALITCWGWPKVQMGITSMQHFIVDSGFIGVWIYQFLNRVLIPTGLHHLVY IPFQFGPAVVAGGLQPYWLKHLAEYAASTKPLSQIASVEGFQLYGNEKVFLVPFICLAFY ATAKKNKKKQTSALLIPAALTSVLAGITEPIDFTYLFAAPVLWVVYSVLSATMNTVMWAF GLRGFMSDGAIGIASMNWIPLWQNHWKTYVMEFIVGIIFGIITYFVFKIMIEKFNYITPG READDQDVHLLSKKEYKAKKAAEAAGKDANDPYIERATAYLELLGGPSNITELSSCATRL RVSVADPNKVASDAAFKANKAVNVVHHGKAIQVIVGLDVPQVLDEMNTLMQQQGGDAKVS TEQDNPYIERATGIVDLLGGDSNIQDVIACSTRVRTHVVDPKKVAPDSEFKKIADSYEVQ HKDNNEVDIVVGLDADQVVDQMKQLL >gi|256541338|gb|ACPV01000136.1| GENE 10 9559 - 10365 718 268 aa, chain + ## HITS:1 COG:STM3831 KEGG:ns NR:ns ## COG: STM3831 COG0561 # Protein_GI_number: 16767116 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Salmonella typhimurium LT2 # 1 268 1 268 281 170 36.0 2e-42 MTIKFIALDTDGTLLNSTGKILPSTKKAVKTALDQGIKVALCSGRPIAGLKHFMDELGII GPNQYAITLNGAITRTADGKIMTKDLVSNRLYRKMYAFANEHHLPFNVVSPDSKIITGDH DVDLMVYTQAYENSATLYIREPDELPSDFEIAKGCFATKAKLLDQWEDKIRQEFGQELYI VRADDCFLELLHPNVNKGTGLKELTEKLGITPEEVMAIGDERNDITMFDFAGTAVCMGNG SEEAKKHADYVTTSNDEDGISNAFEKFL >gi|256541338|gb|ACPV01000136.1| GENE 11 10421 - 11269 705 282 aa, chain - ## HITS:1 COG:FN0508 KEGG:ns NR:ns ## COG: FN0508 COG4667 # Protein_GI_number: 19703843 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Fusobacterium nucleatum # 1 282 1 281 281 226 42.0 5e-59 MKSGLVLEGGAMRGLFTAGIIDVFLENDITFDLAIGVSAGAAFGVNLKSEQKGRVLRYNM RFAGKPYYASWKSWRRSGNLYAANFCYHILPDKLDVFDKEKFMTNPMDFWCVATDAATGE PVYHQLHDAGYVDLEWIRASSSIPFFAHPVAIHGHYYFDGGVSDSIPYDFLEQQNCDKKV VIATQPKSYRKKQSKLYPLEKVILRKYPAVVKKLATRAEDYNAVLDQMVKDEAADQAFII RPPFLLEIGTLETDKKEMRRVYEVGRVEAEKVLPALREYLNK >gi|256541338|gb|ACPV01000136.1| GENE 12 11337 - 13736 2766 799 aa, chain - ## HITS:1 COG:CAC1343 KEGG:ns NR:ns ## COG: CAC1343 COG3957 # Protein_GI_number: 15894622 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoketolase # Organism: Clostridium acetobutylicum # 7 795 15 794 796 936 57.0 0 MAVDYDSKDYLKSVDAYWRAANYLSVGQLFLMKNPLLKTPLVAEDVKPKPIGHWGTIAPQ NFIYAHLNRVLKKYDLNMFYIEGSGHGGQVMVSNSYLDGSYTERYPEITQDQKGMAKLFK RFSFPGGVASHAAPETPGSIHEGGELGYSLSHGTGAVLDNPDVIAAVEIGDGEAETGPLA ASWFSDKFINPIKDGAVLPILQINGFKISNPTIVSRMSDQELTEYFRGMGWDPHFVSVFK GGRFDGEKDPMQVHEEMAKTMDEVIEEIKAIQKHARENNDATLPHWPMIIFQCPKGWTGP KKDLDGNPIENSFRAHQIPIPVAQGDMEHADMLTDWLESYKPEELFNEDGSPKEIVTENT AKGDHRMAMNPITNGGLDAKRLNLPDYRKFALKFDKPGSVEAQDMVEWAKYLDEVAKLNP TTFRGFGPDESKSNRLFQLLDNQKRQWEPEVHEPNDENLAPSGRVIDSQLSEHQDEGFLE GYVLTGRHGFFATYEAFGRVVDSMLTQHMKWLRKAKEQYWRHDYPSLNFVATSTVFQQDH NGYTHQDPGILTHLYEKNRPDLVHEYLPSDTNTLLAVGDKALQDRECINVLVTSKQPRPQ WFSIEEAKKLVDKGLGYIDWASTDKGVKPDVVFASTETEPTIETLAAIDILHKKFPDLKI RYINVVDVMKLMDPKDNKNGLSTEEFDRLFPKDVPVIFAWHGYKSMMESIWFARKRYNVH IHCYEENGDITTPFDMRVLNHLDRFDLAKDAVESIDKLKGKNADFISHMDDLLEKHHQYI RDNGKDMPEVTEWQWSGLK >gi|256541338|gb|ACPV01000136.1| GENE 13 14036 - 14800 472 254 aa, chain + ## HITS:1 COG:BS_glcR KEGG:ns NR:ns ## COG: BS_glcR COG1349 # Protein_GI_number: 16080683 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 1 237 1 235 258 127 34.0 2e-29 MTQEERLIQIKQLLKKKHQLSTRQIAAHFNVSFDTARRDVIHLTETGQAIRVHGGLMEIN CNSVPDFLARNQVQSPVKMKMARMAKRFVHPGQCDFIGSSTTLKQLCPMLNGIDMQIVTN SIDNALSLLAIEIPSVRLLGGVINKKQRFIYSETALETLRQIHFNTAFIGGSRIRDDGVY TPSMADSKIVETAASRANQVVLVAEKYKFTNQSSSPYMSVPLNQIDVLITDTPLPEELKH HFNPKTQIIPVLKE >gi|256541338|gb|ACPV01000136.1| GENE 14 14806 - 15165 258 119 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00601 NR:ns ## KEGG: LCRIS_00601 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 119 1 119 119 204 97.0 6e-52 MFSLFNQKKQSESREVYQDLKNFYNSFFSNIYNEMNIGRYRQIRDAIGLVLNKFDSGDHP LEYTSKLVMYIQARIAMNHLHLTHEQQDLMKKLSDATKYVNLSYVYLSPLTSVEQFVNI >gi|256541338|gb|ACPV01000136.1| GENE 15 15287 - 16114 742 275 aa, chain + ## HITS:1 COG:lin0440 KEGG:ns NR:ns ## COG: lin0440 COG0561 # Protein_GI_number: 16799517 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 7 275 3 269 270 162 32.0 5e-40 MTKLPFKVVAVDMDGTFMHDDQTFDHKRFDRILTELHKKGIHFIVSSGRPYTRLRKDFAG FLNRIDMIADNGSLLLQDNQIISTHLLTYKTTLDLISFIKEHYSKSSIIVTGINNSYTTI NASPSFKQTMNFYYPDRIEVTDLAAAINPQDMITKITLSYQYDFSAELEKEFNQTHAEKI HCTSSGFGLLDIVPYSVNKGSALKYFLRYFGAKPNELIAFGDGMNDAEMLKLAGYSYAMA NAEDQVKKIAKYEAPSNNDDGVLEVLDSYLAKVEK >gi|256541338|gb|ACPV01000136.1| GENE 16 16208 - 16933 597 241 aa, chain - ## HITS:1 COG:SP2020 KEGG:ns NR:ns ## COG: SP2020 COG2188 # Protein_GI_number: 15901841 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 6 236 5 236 242 135 33.0 8e-32 MADYVYRTVMHDIKQNILNNQYKGMRLPDERSLAEHYQVSRSSMKRALELLAQQGIVFKK RGSGTFINPLYLRKQAMFRYDGSNLGITDSFKVPGKKQQIKLLDFHVIKATKEIAEDLFL NENDFVYEFKRLRLLDEQPFLIETGYLPIKIVPELKPETLQKSLFNYLEDEQGKTVTKSF LNITVEPSNEEDQQKLNLKPTEPVGVMEGIFFLDDGTPFEVSNMRVHYHYMNFNTFVNLG K >gi|256541338|gb|ACPV01000136.1| GENE 17 16933 - 17859 1060 308 aa, chain - ## HITS:1 COG:STM0051 KEGG:ns NR:ns ## COG: STM0051 COG1957 # Protein_GI_number: 16763441 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Salmonella typhimurium LT2 # 6 295 7 297 306 214 39.0 2e-55 MNKKPLIISTDPGIDDIAAMTISLFAQELDVRMIVPTWGNVALKYTLQNTLNLEKFLHTK VPVVVGANQPLVAPMISAASVHGKTGIAGFEFEQADDSLIEPGLAATLMAKEIKSSPEKI TLMGIGPLTDFALLFKQYPEVKENIAEIVIMGGNIGHGNHSPFAEYNIAGDPEAAQVVFH SGLLVKVAPLEIGNKAHLTPEQMDKVKTCGEVGNMLYSLFSNIHEPDGDPRIKIYDPTAV GIMLHPEMFTMKKANVNIELRGQYTYGASVMDFMDQEHANAEIATDVDLDKFATWFIDSI KKADQGRE >gi|256541338|gb|ACPV01000136.1| GENE 18 17941 - 19950 1867 669 aa, chain - ## HITS:1 COG:SPy1414 KEGG:ns NR:ns ## COG: SPy1414 COG3158 # Protein_GI_number: 15675333 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Streptococcus pyogenes M1 GAS # 9 665 11 660 666 662 52.0 0 MNKISGKQKVSFTGLLIAIGIVYGDIGTSPLYVMKSIVTENGGISNVNRELIVGSISLIF WTVTLLTTVKYVIIALKATNHGEGGIFSLYALVRKRAKWLVIPALIGGAALLADGTLTPA VTVTTSIEGLKNMRFGDVIPVSSQDMVILITIVILVLLFSIQRMGTSVIGKAFGPIMLLW FTFLGLIGFMNLSHDWSLLDAINPIHALRILFSPANKVGILILGSIFLATTGAEALYSDV GHVGKSNIMGSWPYVFVCLILNYLGQGVWILQNANYHAGNGDFNPFFEAVPSSLRLFAIA LATIAAIIASQALITGSFTLVAEASSLKFLPRMNIIYPSNEKGQIYIPSINKMICVITVA IVFLFRTSHHMEAAYGLAITVTMLMTTILLFEYLGKKGTALSIRCIFLVVFAFIEGMFLF SSLTKFLHGGYVTVLIAGFILAIMYVWFYGNKIRDKREEQNAYVRLDEYTDMLTELSHCD DYPVYATNVVYMAKVKYNKFIKREMLYSILDKRPKRAKAYWFVTVNVTNEPYTAEYAVNT YGTKNVINVQLYLGFRKQTSVNVYLRQIVHDLIADGTIEAQPQQFTTTPGRDVGDFAFVI VNDVISPLTKLTGYEKFMVEARVWLQNLSSNPASWFGLEYADTVVERVPLVLGDHEEEHI QRIKPKKEK >gi|256541338|gb|ACPV01000136.1| GENE 19 20082 - 20774 740 230 aa, chain - ## HITS:1 COG:SP0828 KEGG:ns NR:ns ## COG: SP0828 COG0120 # Protein_GI_number: 15900715 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 7 223 2 217 227 208 51.0 8e-54 MNKQEQDRLKKEAAEKAAAMVKSGMVLGVGTGSTVAFFIDALGKRKDEDGLKLKAIVTTS NRSKKQLEGLGFKVSELADIDQADLTVDGADRVTDNLDGIKGGGGALTLEKNVAINSKKI IWIVDESKLVHRLSGFPLPVEVLPISCEQNFKRFEQEGLKPRWRMDGNQRYVTHYGNYII DLAADPVPAPHGLADYLDHTVGVVEHGLFLDMCDEVIIAHSDGTIEDKKK >gi|256541338|gb|ACPV01000136.1| GENE 20 20774 - 21700 1192 308 aa, chain - ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 3 302 4 303 304 236 46.0 4e-62 MKKIVVIGSSNVDTTLHVKDFPKPGETINALDITTAGGGKGANQAIAAAKSGAETYFINR VGEDSEGNFITHQLKSYGVDTTYVQTTMGAKTGHAYITLNEAGQNDIIIDHGANYELTVE DIRAAGDLIKSWDCVIAQFEIPLDVTLEAFKIAKKAKKITILNPAPAVDEIPKELLQYTD IITPNETESAKITGIAIKDNSTLATNAEKLHMLGVKNVVITYGDKGAYISTPDVEELIPT YKVEAADTTGAGDTFIGYLVSNLNSGLSNFEEAAKIASRASSIAVQRLGAQPSIPTEQEV KQAMEDDE >gi|256541338|gb|ACPV01000136.1| GENE 21 21790 - 22593 885 267 aa, chain - ## HITS:1 COG:L51063 KEGG:ns NR:ns ## COG: L51063 COG1085 # Protein_GI_number: 15672818 # Func_class: C Energy production and conversion # Function: Galactose-1-phosphate uridylyltransferase # Organism: Lactococcus lactis # 3 258 6 254 261 228 43.0 7e-60 MDKNPLVYEYSIGKRKPYDYDYGNRQGNQNAGCPFCDVQHLINIYEKDGDKIWLKNKYPT LKDTNQTILIESSDHQGDISTYTREDNQELMKFGLKCFQKMNNSGRYQSVLWYKNFGPKS DGSLTHPHMQIVGLYHKDGYHDIGADNFKGFEVGRSGSVEMNLSARPVQGYQEVNILTHD NTNLDTWADLIQKGTQYVRSVLSHGVDSYNLFFYPINDGQGTCCKIIPRFYASPYFVGYK ISQVDDSDTLKWEAERLKGFVNGGILQ >gi|256541338|gb|ACPV01000136.1| GENE 22 22766 - 24070 1671 434 aa, chain + ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 44 414 19 408 419 141 27.0 2e-33 MKFYKKLVLTGAAALAVLGLSACSNNNSSSSSSNKKIPTKINKKTTVTFWYSLTGNAQSS LQKLTKDFEKKNPNITIKLQSQGGNYSDLQSKLVSGLQSPKDLPTITQAYPGWLYNAAKN NMLVNLTPYINNSEIGWGSYAKSGIKKALWDGANINGTQYGVPFNKSVEVLFYNKTLLDK YDVKVPTNMSELASASAKIYRESHHKVRGVGFDALNNYYMMQMKETYGKDFNKNLNFAAK DSVKAINYYANGVRAGYFMQAGTEKYMSTPFNNGRVAMFIGSTANEAYLKQGLKKGYTYG VAARPSTMNVQQGTDIYMFKKATAMQKSAAFKYLKFLTSKSSQLYWAKQTGYMPVNTAAI NDKVYQSAKNSKIPAIIAKTSKNLYFLPVTKNATAAYDQVNANMQTILAKASKKQSWNSD IKTGKDKLDAAWKQ >gi|256541338|gb|ACPV01000136.1| GENE 23 24134 - 25534 1456 466 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00592 NR:ns ## KEGG: LCRIS_00592 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 466 1 466 466 752 99.0 0 MTIDYRKDIIDLMQATGSDPQSLKQSMIALKIISKIYNQAVLGNSPENKNEVVKIAEKAD QTVKNEPEIKTENKLENKTEIETKKENDENTVEKIKPKKTKEELEKEKAKKEEAAKALSP TVLKNKNKYATITPIPKPVVKKIIPVAKPKEKQYEIRRKLLGAEAVDENGHSVQYFNEHL TRIEKLENGDTVTLLDHLNDSGNRPIIKVEHHAKSFAPDEEIIEFGPAVVHRDSFGLYIK QDSNGKNLSQVNPEKAILYLDMNTVSHFNLHENDLISIVWRVSDPSFIRVRWRYAEAEVT IPEKKEKPDKNKETEKHKTKGRHKSLLHQLEKKEKQSSEKQNEDYASRIDFDLDKKRVTV VVGDKSLTSNLAKVIEAHNGVARIIEMKQASNVLRACKESNYVILIQSYIKHSISQILIN SPHKSYSIAMATTAGQLAVEKALYRARYKLNVTDNDQIQYPFLVNN Prediction of potential genes in microbial genomes Time: Wed May 25 05:59:22 2011 Seq name: gi|256541337|gb|ACPV01000137.1| Lactobacillus crispatus 125-2-CHN cont1.137, whole genome shotgun sequence Length of sequence - 617 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 3 - 62 8.8 1 1 Tu 1 . + CDS 84 - 581 573 ## LCRIS_00591 putative protein without homology Predicted protein(s) >gi|256541337|gb|ACPV01000137.1| GENE 1 84 - 581 573 165 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00591 NR:ns ## KEGG: LCRIS_00591 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 165 1 165 165 269 98.0 3e-71 MKKKLLLFVSFLAGLLFLVSTPTYASKLPKGYGIAKTFTTPKATRGTWYYREKGDKTISK VKITAHSVDGKKLYVPSQKFFEKNVYNVSAKKRNQFIKKTENIYAAANYKKGFNVNNWVN LAGDGEYYIPVTRTVNGKKVKALRIATGAGPYTAAYAYKTKTLVK Prediction of potential genes in microbial genomes Time: Wed May 25 05:59:28 2011 Seq name: gi|256541336|gb|ACPV01000138.1| Lactobacillus crispatus 125-2-CHN cont1.138, whole genome shotgun sequence Length of sequence - 11468 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 5, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 919 679 ## LCRIS_00588 hypothetical protein - Term 929 - 972 3.2 2 2 Op 1 17/0.000 - CDS 995 - 1648 774 ## COG0765 ABC-type amino acid transport system, permease component 3 2 Op 2 31/0.000 - CDS 1666 - 2307 632 ## COG0765 ABC-type amino acid transport system, permease component 4 2 Op 3 16/0.000 - CDS 2307 - 3125 926 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 5 2 Op 4 . - CDS 3137 - 3877 295 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 3910 - 3969 8.0 + Prom 4366 - 4425 6.2 6 3 Tu 1 . + CDS 4516 - 5145 780 ## COG0572 Uridine kinase + Term 5149 - 5207 12.2 - Term 5135 - 5193 12.2 7 4 Op 1 . - CDS 5210 - 6601 1557 ## LCRIS_00582 permease of the major facilitator superfamily - Prom 6638 - 6697 4.9 8 4 Op 2 . - CDS 6707 - 7285 600 ## COG4721 Predicted membrane protein - Prom 7397 - 7456 3.5 9 5 Op 1 35/0.000 - CDS 7466 - 9235 239 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 10 5 Op 2 . - CDS 9236 - 10969 235 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 11 5 Op 3 . - CDS 10956 - 11408 342 ## LCRIS_00578 transcriptional regulator Predicted protein(s) >gi|256541336|gb|ACPV01000138.1| GENE 1 1 - 919 679 306 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00588 NR:ns ## KEGG: LCRIS_00588 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 290 1 290 303 592 99.0 1e-168 MSVNAQLTDRERVELTKKAYDELQLGDTIKIDQHYLGTVCRNVYAKDGMRAFVISSPNEI TILFKGSYGFKKGTPQTWRDEWIKTNLPILKALLARKRTIPSQLKSAAHLLNQTINQFKG SRIYIYGHSLGSINAQFALANCRHPEAIAAAYLYEGTNIWLLLTPAERRQVAKMREKIFN YVDIYDPVTLGITETHHMVGKLCYVDSEPMQPIKQHMWGGYHFNADGSLKLRKVDQAFLA ESRSERKLLARSGDLADFLEKMGSAEEVKKLATDKIEQLVQRYPDHKSLAKLTALFEGEI RKSKNR >gi|256541336|gb|ACPV01000138.1| GENE 2 995 - 1648 774 217 aa, chain - ## HITS:1 COG:BS_glnP KEGG:ns NR:ns ## COG: BS_glnP COG0765 # Protein_GI_number: 16079799 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 4 213 3 214 218 194 52.0 1e-49 METFIHAYSWVDIRFLLQGLWVTIYVSLISIALSFVVGLILGLVRYMKIKYVSAIVGFII DIIRNLPLLLIIFFTYFGLPQLGIVTNPTTASIAALVIFEGAMLAEIVRSGIGSVDSGQM EGARSNGMSYGQAMYHVIMPQALHNMIPALLSQFVSLVKDTSLATIIVLPELLYHAQIIY SQNTTYLIPMYVIIAIMYFIVCFCLSTIANYLQKKYD >gi|256541336|gb|ACPV01000138.1| GENE 3 1666 - 2307 632 213 aa, chain - ## HITS:1 COG:BS_glnM KEGG:ns NR:ns ## COG: BS_glnM COG0765 # Protein_GI_number: 16079798 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 4 211 5 212 216 204 55.0 1e-52 MWQIITNNWGSFLTGFWNTILSSIIALVFSLILGVIFALLEVAPSKFGQVIAKIYIAIFR NIPLLVIVMIFYLIVPRYIVKLSGFQAGTIGLTLYTSAFIAETVRAGINSIGTGQMEGAR SNGMTYVQAMRYVILPQAMKIVIPPLGNQFVNLVKNSSVLAFVAGFDLMYQAQLIAFSTF QTIDTYIIVGLFYLILTLPLSYYMRHLEKKLVN >gi|256541336|gb|ACPV01000138.1| GENE 4 2307 - 3125 926 272 aa, chain - ## HITS:1 COG:BS_glnH KEGG:ns NR:ns ## COG: BS_glnH COG0834 # Protein_GI_number: 16079797 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 4 264 1 272 273 234 46.0 1e-61 MKKIKRFLFLPLLILLAFTLTACGKHASNNVYQKVKESKTIVWGVRADTRLFGLTNIKTG HIEGFEIDLAKALTKQMLGKDAKTDFVTTTANTRIPLLKNGNVDAVLATMTITPERAKQV TFSKPYFPAGSSLLVPNNSKIKNVKDLEGKTVLAVKGTTAVDDVHKYAPKARILQYDDYG QAMSALKANQGVALTTDNGLLAGIAQENPGYKLVGGVYSNAPYGIAVNKGQKQMADHIDQ ALNELQKNGTYDRLIKKWFAGIPGFSLKGVLK >gi|256541336|gb|ACPV01000138.1| GENE 5 3137 - 3877 295 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 219 1 221 223 118 35 2e-26 MTAIIEFKHVDKYYGKLHALKDINLKIDEGQVVSIIGPSGSGKSTLIRTMNGLEPINSGQ LIVTGYDLADKKTDINKIRKNVGMVFQHFNLYNNHTVLENVMLAPKIVLKRPDDENRKVA MQYLEKVGMADKIDSYPRQLSGGQKQRVAIARSLAMHPKVILFDEPTSALDPEMIEDVLE VMRYVAEQGITMVVVTHEMGFAREVSNRLIFFDNGHILEDRKPEEFFAHPDTERARQFLS KVISKD >gi|256541336|gb|ACPV01000138.1| GENE 6 4516 - 5145 780 209 aa, chain + ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 1 209 1 206 211 233 57.0 1e-61 MGKLEKPVIIGIAGGSGSGKTIIAHEIADNINDQDRIMIMTQDSYYKDNTGVSMEERMKI NYDHPDAFDMPLLEAQLSQLMHRKPIEMPTYDFTAHTRSDETIHVEPADIIILEGILVLF NEDIRNLMDIKVYVDTDDDIRFIRRLERDMKERGRSLDSVINQYLGTVKPMYNQFIEPTK RYADIIVPEGGENDVAIDMLTTKLQSVLK >gi|256541336|gb|ACPV01000138.1| GENE 7 5210 - 6601 1557 463 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00582 NR:ns ## KEGG: LCRIS_00582 # Name: not_defined # Def: permease of the major facilitator superfamily # Organism: L.crispatus # Pathway: not_defined # 1 463 1 463 463 827 100.0 0 MARRSNAEKEAEAEAIKNWNPRYKHNVIIYLWIYGILGAVTGITNDAALSYYKIVAPHLI SGLNIFNAATAILMSVMIATVHKWGYRKILLILPPMTAIFMALTCITTNQLVIMIAYTIS WTAIGVYDLMYPLMWTSYVPGKIRTKMFSTVMIVNLITQTICTFLGGKAVVWFFGLIRGI PYHEASVLSGKSEMLTGQTLADYTNSYRILLYITAAVTMLAFVLALFIHDVPRDYRSTAD DKEPSRAEKMAMYKKLLSKKTLMWIVYIAGIQLGARLVAVYVPIYLNSYLHIPRDVTSTI NTFVQAAMLIGYFFAPFLEKKMGAIVSVAAGTLTCVPVMLLLANGRRLGSGTVLFVIVGL LLFLRTGLANATMPIQQEVQMVIVDKDLRPAFTGVVQIAYAVVGVIDGLFTEFYLFTTQD GYANAYYIAAVIYVIASVLLLVFFAKKYNRILDTANAQDDNQN >gi|256541336|gb|ACPV01000138.1| GENE 8 6707 - 7285 600 192 aa, chain - ## HITS:1 COG:SP0719 KEGG:ns NR:ns ## COG: SP0719 COG4721 # Protein_GI_number: 15900616 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 7 185 4 179 186 92 35.0 6e-19 MFTRSSKWNVKSVILVALIGIIMGVIYTYGFNNVYNLVKLSFLPTGYAPVVDNVFTGLWY MAAPLAMYFVPTKGAGTIGELLAATVEMAIGGQWGALTIFEGLIQGAMNEIGFFPKKERY EKFSWKSVLTGAFFANLGGFIPSYFLFGWSHYQVNVQMLMFIVSMISSLLFDGVLVKLIT NLFDKALKPKVA >gi|256541336|gb|ACPV01000138.1| GENE 9 7466 - 9235 239 589 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 366 567 147 347 398 96 30 7e-20 MSNTKKALRYFAKYLKPYWKGITIVVILSLISSGAQVMAPTYLGRSVTALTTYLVDLKKG TASMNTFYSALWSMFLFYLLSQIAIFIAWMVMSKFNADSTNDMRENLFAKFQRMLVRYFD THQDGKLLSLFTSDLDNIFNAMNNAIFEIISQGIMFVGTIIVMFTINSTLAWTTIATTPF ILIISVLLMKKARVYIDKQQDEIGDLNGYITEQINGEKVIITNGLRQESVDGFKVYNNKV RTVLFKGQFYSGILFPLMNGLNLLNLAIVIAMGSWMIISGQISQAIGLGLIVTFVEYSQV YFQPLTQITSIYSMIQLALTGARRLATVEEQKDENEVPNGKVISGLNHGVKLENVHFGYN KDKEILHGVNISVDKGQSVALVGPTGSGKTTIMNLLNRFYDVNSGKVTFDGTDVRDIQLT SLRNNVGIVLQDSVLFTGTVADNIRYGKPNASMDEVISAAKQANIHDFIGTLPDGYDTQV SDASSIFSTGQKQLMSIARTILTNPPFLILDEATSNVDTVTEEKIQKAMDTVIAGRTSFV IAHRLKTILNSNKIVVLKDGNVIEEGSHEALLKEKGFYYKLYTDQMAFD >gi|256541336|gb|ACPV01000138.1| GENE 10 9236 - 10969 235 577 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 329 558 126 354 398 95 26 2e-19 MENFKIILPYLKRYKKDVVCAIIAILVSAFSGLYQPKLLENIQKALMANQKQAVLSDGIW LVVLGIIAIISGIFNVYFAAKIAQGVVSDLREDTYAKIQTFSFGNIKKFSAGSLTTRLIN DMNQVMNMMMQLFMQMLRLPILIVGSFIFCILIIPRFWWAPVVMVALIFGFGAYVLRQMN SLFTKFQEMMDRISNQAQETLQGVRVVKSFNQGPQEIKKFDQTSDQLNDYNIVIGYWFSA IMPAFQMIAYTVIALIVYLIGKNITAHPSDIAVVSPFVNYVLTLLFTIMIAGMTLMQFSR ANISLGRIREVLETEPDVKFVESGSVAPLSGSVEFDHVSFTYPDGDDPTLKDISFKIKPG QMVGIVGATGAGKSTLAQLIARLYDPTKGEVKIGGQNIKDVTEAALRKTVSFVLQRAVLF SGTIASNLRQGNAQAKLHELQRAANMAQASEFIERYNDSFDHEVEERSANFSGGQKQRLS IARGLIAKAPILILDDSTSALDAESEKKVQQALEHELPDTTTFIIAEKIVSVINADTILV LDDGKLVAQGTHEELLKTSPVYQEIFKTQKGKKGGNE >gi|256541336|gb|ACPV01000138.1| GENE 11 10956 - 11408 342 150 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00578 NR:ns ## KEGG: LCRIS_00578 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 150 1 150 150 285 100.0 3e-76 MKISETEKLNLSIIHGSRAYSQWEQDHDLPDYLVVIMYELLIRGKLTQRELVNLSDLPKQ SINKGIKILRDHDHITMTVDPSDKRVRFCQLTEAGRKYAYDRLRPLFELEEKTAQAMGTD KMKLLAKLSEEWSTTFWHFLSEERSKNGKL Prediction of potential genes in microbial genomes Time: Wed May 25 05:59:47 2011 Seq name: gi|256541335|gb|ACPV01000139.1| Lactobacillus crispatus 125-2-CHN cont1.139, whole genome shotgun sequence Length of sequence - 20170 bp Number of predicted genes - 18, with homology - 18 Number of transcription units - 12, operones - 4 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 52 - 111 8.9 1 1 Tu 1 . + CDS 140 - 958 605 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 965 - 1005 4.1 - Term 947 - 999 15.3 2 2 Tu 1 . - CDS 1000 - 1668 782 ## COG0518 GMP synthase - Glutamine amidotransferase domain + Prom 1745 - 1804 7.3 3 3 Tu 1 4/0.250 + CDS 1830 - 3161 1447 ## COG0531 Amino acid transporters + Term 3273 - 3308 4.0 + Prom 3163 - 3222 8.7 4 4 Tu 1 . + CDS 3388 - 4707 1216 ## COG0531 Amino acid transporters - Term 4500 - 4550 0.3 5 5 Tu 1 . - CDS 4704 - 5444 737 ## LCRIS_00573 hypothetical protein - Prom 5533 - 5592 7.3 - Term 5536 - 5578 9.2 6 6 Op 1 . - CDS 5601 - 6521 708 ## COG4989 Predicted oxidoreductase - Prom 6548 - 6607 4.5 7 6 Op 2 . - CDS 6609 - 8231 1542 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 8261 - 8320 11.8 8 6 Op 3 . - CDS 8325 - 9407 1318 ## COG1363 Cellulase M and related proteins - Prom 9478 - 9537 14.2 + Prom 9778 - 9837 2.5 9 7 Op 1 . + CDS 9870 - 10082 168 ## LCRIS_00569 hypothetical protein 10 7 Op 2 . + CDS 10079 - 11395 777 ## LCRIS_00567 putative protein without homology 11 7 Op 3 . + CDS 11388 - 12587 1143 ## COG0477 Permeases of the major facilitator superfamily + Term 12594 - 12629 4.0 - Term 12581 - 12616 4.0 12 8 Tu 1 . - CDS 12623 - 14092 1098 ## COG0477 Permeases of the major facilitator superfamily - Prom 14127 - 14186 5.0 + Prom 14086 - 14145 4.4 13 9 Op 1 7/0.000 + CDS 14377 - 14904 691 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase 14 9 Op 2 . + CDS 14916 - 16247 1060 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 16269 - 16311 9.4 + Prom 16341 - 16400 3.9 15 10 Tu 1 . + CDS 16434 - 17966 1335 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen + Term 17972 - 18028 8.1 - Term 17965 - 18008 8.1 16 11 Op 1 . - CDS 18018 - 18290 372 ## LCRIS_00561 putative protein without homology 17 11 Op 2 . - CDS 18372 - 19208 844 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 19243 - 19302 6.5 - Term 19314 - 19369 13.2 18 12 Tu 1 . - CDS 19372 - 19809 271 ## LCRIS_00559 acetyltransferase - Prom 19952 - 20011 9.7 Predicted protein(s) >gi|256541335|gb|ACPV01000139.1| GENE 1 140 - 958 605 272 aa, chain + ## HITS:1 COG:BS_glnH KEGG:ns NR:ns ## COG: BS_glnH COG0834 # Protein_GI_number: 16079797 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 1 263 1 272 273 215 43.0 9e-56 MRKKFLLIISIVVLFALPLSGCKQNKKQNVYQAVKTSKTINWGVKADTPLFGSINIKTGK LNGFEIDLANALTHEMLGKNAKANFITTTANTKIQLLKNTNVDAVIAAMTITPERKKQVE FSHPYFPAGQSIMVADSSAIKNAKNLNNKKVLVVKGTTAADAIHQVAPKAEILQFDDYGQ AFAALKAGQGDAFVTDNGILAGILRDSSGYKLVGGTFTNQPYGIAVNKGQNDMLKHINTA LAKLEKNGTYNHLVKKWFGNIPGMNIKELEKK >gi|256541335|gb|ACPV01000139.1| GENE 2 1000 - 1668 782 222 aa, chain - ## HITS:1 COG:lin0511 KEGG:ns NR:ns ## COG: lin0511 COG0518 # Protein_GI_number: 16799586 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase - Glutamine amidotransferase domain # Organism: Listeria innocua # 1 220 1 220 226 153 38.0 3e-37 MRVNVLQHAPNEGPGSIQAWCHARDNEMFVYHPGNFGILPTVDETDLLVVLGSPNSPNDD LNWVKNERVLIRQMLDQHKPILGICFGSQQIAKTLGYKVLDAPAKEVGWAPVYLQDQTIT GIPDKLTALHWHEQMSEIPTEAKLLFSSDLVKNQGFLLGDNVIGLQFHFEPQIDNVREIA INDGAYALENNDLHQTPTEIINHGVPEKNKDVMFTLLDFIAK >gi|256541335|gb|ACPV01000139.1| GENE 3 1830 - 3161 1447 443 aa, chain + ## HITS:1 COG:BS_ykbA KEGG:ns NR:ns ## COG: BS_ykbA COG0531 # Protein_GI_number: 16078351 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Bacillus subtilis # 2 432 5 434 438 346 46.0 6e-95 MDNHLKRSIGLGSALSIIVGTIIGSGIFFKQASVLDSAGSTFMALLAWILAGIITLTAGL TIAEIGAQMPYTGGLYVYIEKIYGRVLGFMAGWMQAIVYGPAMIAAVTGFLSIMVTNLFG IGTEWRIPIGLITIIAIGGLNFLENKVGAAFAIITTIAKMIPIFAIIFCGICWGEQNAVT QTVTELNRSTGGLGVAVLAALFAYDGWIFIANLGGEIKNPQKLLPKAIIIGITTVLVIYA LITIGIFSFIPADKIHALGQNSTTYLADAILGPIGGKVLSVGIIISMLGTLNGEMLTFPR VIYAMAKRGDLPFSRFLSYVTPKGKAPVMATMLLIALTGIMMTFFDPDYLSNLCVFTIYS FYVLAFFGLFILRYKNKDQRPFSVPFYPLIPLVAIAGGLFVLVSQFFNDPAGVLLFTGIT AVGWPIFFLVKKMSKAQNTIIED >gi|256541335|gb|ACPV01000139.1| GENE 4 3388 - 4707 1216 439 aa, chain + ## HITS:1 COG:BS_ykbA KEGG:ns NR:ns ## COG: BS_ykbA COG0531 # Protein_GI_number: 16078351 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Bacillus subtilis # 2 432 5 434 438 383 49.0 1e-106 MDNKLKRSIGFGSAFSIVIGTIIGSGIFFKQASVLDSAGSTTMALLAWIFGGLITLAAGL TIAEIGAQMPYTGGLYVYIENLYGRILDFMAGWMQIIVYGPAIIAAVAGFMSIMMTNFFG LNHSWRIPLALITVLAIGIMNFFENKVGAIFSVITTIAKMIPIAVIIICGICWGQQDAIN QTVAEVSQHTSNFGVAVLATLFGYDGWILIANLGGEMKNPQKLLPRAIIAGITAVLAIYT LITIGIFRFIPANQIHQLGENTTTYLANAVFGAIGGKILSIGIIISMMGTLNGKMLTFPR IVYAMAKRGDLPFSKYLAYVTPKGKSPVVATLFIVLLALLMMIFFDPDHLSDLCVFTVYC FYLLAFFGIFILRKKNKAERPFSTPLYPFVPIIAILGGLFVLISELINDPAGVLLFAGIV IIGLPIFYAVKRMNKHRLH >gi|256541335|gb|ACPV01000139.1| GENE 5 4704 - 5444 737 246 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00573 NR:ns ## KEGG: LCRIS_00573 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 246 22 267 267 487 100.0 1e-136 MYRSDAEDSVHSDYTLNVQVFTLDNLPFSPLTGDQQHIFFDYEKAGTDAVKITGVEGHFY NAITRRYEVTDHTFVVGELLDDKVSETVATQQMREAAEKVIAELSKRIPMPPHIKHPKIL TDVQRAEKLVTDRNVKITSLSKATGISTYTLYNYRKNPASLHKASQATVDCLTSKYFETY FSRNEIERFRMMLINIVGAYLKETEGNPIAYDPAHALYTMCQKGDWHRLAKMEELWRASY SVERSL >gi|256541335|gb|ACPV01000139.1| GENE 6 5601 - 6521 708 306 aa, chain - ## HITS:1 COG:BH3927 KEGG:ns NR:ns ## COG: BH3927 COG4989 # Protein_GI_number: 15616489 # Func_class: R General function prediction only # Function: Predicted oxidoreductase # Organism: Bacillus halodurans # 1 306 1 305 305 354 53.0 1e-97 MKRIKMGCTTLSIPAMALGIMRMNQKSVPEAQVAIQAAYDAGINFIDSADIYGGGKSEEI FGQAFSQMQIKREEMFIQSKTGIVPGKRYDFSKEHILHSVDEILERMQLDYLDSLVLHRP DALMDPEEVAEAFDQLQAAGKVRFFGVSNFDTAQFKLLQSCLSQRLMFNQLQFSLKHTGM IDFGMHMNMVDKPSVDRDSQFLDYARLHKVTVQAWSPFQYGMFEGTFIDNDGFPKLNQEL QKLADKYEVGKNAIAAAWILRHPANIQMLVGSMNPQHIRDSAKGAKIRLTRQEWYDLYLA AGNYLP >gi|256541335|gb|ACPV01000139.1| GENE 7 6609 - 8231 1542 540 aa, chain - ## HITS:1 COG:BS_ykpA KEGG:ns NR:ns ## COG: BS_ykpA COG0488 # Protein_GI_number: 16078507 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 540 1 538 540 704 62.0 0 MITVSDVSLRFGGRTLYEDVNLKFTPGNCYGVIGANGAGKSTFLKLLEGKLEPTTGSISI DPNERMSSLNQDHFAFEDFTVMDTVIQGHKELYQVMKEKDALYAKPDFGDEDGVKAAELE SKFAELDGWNAEADAAKLLQSLGIPEEEHQMMMKDLPESEKVKVLLAQALLGNPDILLLD EPTNGLDVHTVEWLEDFLADYPNIVIVVSHDRHFLNQVCTEMCDVDRGKIQLYVGNYDFW YESSKLANELAANQNAKKEEKMKQLQEFIARFSANASKSRQATSRKKQLDKITLDDIKPS SRKYPFVKFEMHRDLGNDLVKVENVSYSVDGEKILDNVSFIVRPGDKVAFLSRNALATTA LLDIVAGKLKPDTGTVTWGQTTAFNYMSRDLNANFNNDELTILDWLRQYATKEQDDNTFL RGFLGRMLFSGEEIEKKIKVLSGGEKVRCQLSRMMLEPANVLIMDDPTNHLDLESITALN DALVSYPGSILFTSHDHEFIQTIANHIIEVGPKGIVSRQDTSYDEFLDKESIQSAVAKIY >gi|256541335|gb|ACPV01000139.1| GENE 8 8325 - 9407 1318 360 aa, chain - ## HITS:1 COG:lin1180 KEGG:ns NR:ns ## COG: lin1180 COG1363 # Protein_GI_number: 16800249 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Listeria innocua # 4 358 2 357 359 186 33.0 9e-47 MQKEQEIQMLKEFSDANSTSGFEEEFVKLFTSYAEKTADIEVDGMFNVYAAKKENKGNRP VIQLDAHSDAVGFITQAVRPNGLIKFVPLGGWVKYNIPALRVKVRNRDGEYIPGVVATKP PHFMTAAERNNVPDVADMSIDVGSSSREETIKDYKIDTGCPIFVDVKCEYHEKSGLFFGK DFDDRFGAGAMVDVLDNLKGEETNFDVVAALSSQEEVGLRGAYVTARKVKPDLCLVLESC PADDTFTPDWLSQTGLKRGPMLRDMDTTFLPNPKFQQYACDLADKNNIPYTRSVRTGGGQ DGAAIYYENGAPTIVIGIPVRYEHSPYCFSSYKDFKASVDLATAIIRDITQEKLDSFKKF >gi|256541335|gb|ACPV01000139.1| GENE 9 9870 - 10082 168 70 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00569 NR:ns ## KEGG: LCRIS_00569 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 70 125 194 194 142 98.0 5e-33 MIAIEQHQGQTWMRVREFLTTVDIIYITGQFKGHPCLYLAYSSGDIHNALFKNKALAIKY KNYDFSKIKS >gi|256541335|gb|ACPV01000139.1| GENE 10 10079 - 11395 777 438 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00567 NR:ns ## KEGG: LCRIS_00567 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 183 438 1 252 252 426 97.0 1e-117 MKDINNLLQQKSNLLLKISSLPLNLFPYLVFSLIIKQNTAISVLPFALFYAFRRTTLFLF KGGENEDNVIGWFGLLAALLGYFLGIFGIFLPALYCISASLAGIGAACFPSVQKQIAIQS DYHPSKNDLFAYFGAILILLAIVVFVEPHLPTISFIAMLIYTLIAILGFKYSPFRAHSRE IVLQWQNVWLTLGLLLAILLIREGWNSGKDIFSIFGIIVSAVVIINYLIKLALSQKHGKL SRKMQYRLTIAGLCQDFTTIFTTIFSAVYISVLFGAKNYYWLFVIILIASFIKRPLLKTL REYLPFDDFTIQSWGIVLGLVITLFRPTYFAGIFLIRIFYSLQNTDTLDLIRDHVDTNIY MINYRFRTAGGFLTQLILWGGLLLFNGPHIFEQIFNYHINKSVMNSSQPLFLTQLILVLF IISFTIYTLKLNKGNKNE >gi|256541335|gb|ACPV01000139.1| GENE 11 11388 - 12587 1143 399 aa, chain + ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 7 393 4 390 402 378 52.0 1e-104 MNEKPIWKKNLLVLSIAVFIAGIAFSEVMPFLPLYIDTLGNFTHKQLNFWSGFIYSGTYF VSAIISPWWGKLADKKGRKPMTLRASLGMAIVLGCMGLVTNVYQLFILRMLQGIFAGFVS NSNALVATETPKEKSGQALGTMASSFTAGNLLGPFIGGALASIFSYRVTFFITGGLLLIA FLLSLFFVHETDFKPVTEKKLDKASGVIKELRSPQLIFGLLLTTLIIQAANNSINPIVSL YVKQLMANHGNVVFISGVIAALPGIATFLAASRFGALGDRIGTHKIIIAGFIGATILFFL TAFVQNTVELGILRFLVGFTDACLFPQVQTLLTKNTPAKITGRIFSWNQSAMYIGNIFGP LLGSTISGLTNYSTVFIVTAGIVVFNLILFRFNVIKNLQ >gi|256541335|gb|ACPV01000139.1| GENE 12 12623 - 14092 1098 489 aa, chain - ## HITS:1 COG:L35134 KEGG:ns NR:ns ## COG: L35134 COG0477 # Protein_GI_number: 15672220 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 458 1 458 486 252 33.0 1e-66 MTKKQISMVTLSLLLANIMSGLDATIINTAIPAIVSDLHGIQYMGWIVACFLLGMSVSVP IWSKIGERMGNKFAFELSLALFILGSVLEGVAPDIYFFLISRVLMGVGAGGMGSLPYVIV GYIYPNIKRRTVILSYIAASFSAACIAGPLVGGWIVDALSWHWVFYINVPLGLISIILSF LFYRGIRKPNINTVFDRLGAFTLIGGLTCFLIGIQMLGLASNFLVAIFVIIGIVMLVWFI LVEKKAASPIVPLSVFTNKALVGDFILFAFAWGAYIAVNTYLPMWSQAILGTTALIGGMT LIPNSIFDIAGSQSTPHLLRHFNNYHLLIFDFTLIAITVIGLIIVPISTPYQILMSIAAL SGLGVGSIFVILQIKVQIDAGEKDMAPATSLSFLIRILAQTIMAAVYGVIMNLALARGIA GHHNITMTMMNKLSDAESAKSLPKALMPTMRTIFHTGIREIMIVSLLLIICGYVANFIYN HHEAKKAAE >gi|256541335|gb|ACPV01000139.1| GENE 13 14377 - 14904 691 175 aa, chain + ## HITS:1 COG:lin1954 KEGG:ns NR:ns ## COG: lin1954 COG2065 # Protein_GI_number: 16801020 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Listeria innocua # 5 174 7 179 183 192 58.0 3e-49 MAKEIIDALSMKRALMRMTYEIVERNKGTKDLVLVGIKTRGWYLAERIAKNLKNLEDVEV PVGAIDISQYRDDLPEAEKEKMIHSQQLDFDITDKNVILVDDVLFTGRTIRAALDALMDQ GRPAKINLAVLVDRGHRELPVRPDFIGKNIPTAMNEKVKVAMTEVDDKDSIEIVK >gi|256541335|gb|ACPV01000139.1| GENE 14 14916 - 16247 1060 443 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 14 435 5 437 447 412 48 1e-115 MNKKEKYRNPEAVLDVYEKPEFGQGVLLSLQHMFAMFGSTVLVPILIGINPSIALLSSGI GTLVHMLLTHFKIPAYLGSSFAFVATMQALMKADGYPAVAQGAIASGLVYVVVAIIISKI GSGWVNKVLPPIVVGPIIIVIGLSLATTAANDAMMNNSKYDLTYFGVAIFTLVMTLVFQM CFKGFTSLVSIMLGIICGYILSCCLGIVDFSGVEKAAWFTLPALDVPGISYHFKWYPAAI LAMAPIAFVTMTEHMGHIMVLNSLTKRDFFKNPGLHRTMMGDGLSTIIAGFIGGPPTTSY GENIGVLAMTKVYSVWVLAGAAVSAIIFSFVGKLAALIESIPMPVIGGISFLLFGTIASN GLKILVDDQIDFGEKRNMLIASVILVIGIGGAYLQLGNFQLTSVALSTIIGMLLNWILPK KAASEKAQEEKIKQEKQEGKIYQ >gi|256541335|gb|ACPV01000139.1| GENE 15 16434 - 17966 1335 510 aa, chain + ## HITS:1 COG:MA2369 KEGG:ns NR:ns ## COG: MA2369 COG2865 # Protein_GI_number: 20091201 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Methanosarcina acetivorans str.C2A # 20 401 13 367 510 70 24.0 1e-11 MDFLNFKAITQTGNFKTPSENENIEYKEASWKLPKSFWETVSSFANTLGGIIVLGIAEDK SKHEFSITGVDNVEDIETQIFNDNNNISCLNRPVIQNNDVQISVFQNKTIIQVIIHPEPF NTRPITAFGKAYIRTGDGDRVTTKEQLKYFTVESQNEIDTHLLPSTYTIEDLDAENIKEY RKIIDKKGIISTNSQLSDQEFLYSIGVFRKDRLSNSNEYHLTDGGLLFFGKYISITDRFP RFQLDYQQYNSDNSTNWNDRVSAGDMNYPTLNIFSFYNLVLTKIEANVPDPFIQGSDLSR TSYHNDLIIAAKEALVNCLMHSYYDGMVGVKIVDRPSYFEFTNPGTMRVSKESFLRGQYS SIRNTEIASLFRRIGVSETAASGGPRILNTVLQNNLNDPEINIDYEINTTRIRIFKTFAI DNQEKLTEPEKFIMSFASRNPNFSINDIVKDPQNHFGKQTTIRKYVNSLVEKHLLSNEKI GKKYIYNLQKNNDYLNRVKHLKHLEDNLLK >gi|256541335|gb|ACPV01000139.1| GENE 16 18018 - 18290 372 90 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00561 NR:ns ## KEGG: LCRIS_00561 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 90 1 90 90 104 86.0 9e-22 MKKMRLIGTIIGVAGAIGAVAAVVYKKFKEKQAMVNTPQEKTLLLGNTSSKAKSELMKAE LSENDQVETNNTEIPHVSLDDDKPRIFEDK >gi|256541335|gb|ACPV01000139.1| GENE 17 18372 - 19208 844 278 aa, chain - ## HITS:1 COG:lin2739 KEGG:ns NR:ns ## COG: lin2739 COG0656 # Protein_GI_number: 16801800 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Listeria innocua # 5 275 4 274 283 296 52.0 3e-80 MKDYVILNNGVKMPRLGFGVYQIDDLAQTQQVVENGLEVGYRLVDTAQIYGNEQAVGDAL VHSSIPREDIFVTSKIWVDKYGYDQTLQAFDDSMKKLKLDYIDLYLIHKPYNDYYGTWRA LERLYKEGRIRAIGVSSFWNERLADLITFNDVKPAVNQIETNVWNQEWKSQQYMEKEGVQ PEAWAPFAEGANHIFTNPVLQKIAEKHHKTTAQVMLRWFLQRNYVVIPKSVHRERLAENF DVFDFELDDDDMALIKTLDQGYSVLEDEMDPEIAESFR >gi|256541335|gb|ACPV01000139.1| GENE 18 19372 - 19809 271 145 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00559 NR:ns ## KEGG: LCRIS_00559 # Name: not_defined # Def: acetyltransferase # Organism: L.crispatus # Pathway: not_defined # 1 145 12 156 156 282 100.0 2e-75 MFSLLAMSLHRNVKFHAIYNDGQFCGITYYAENDNTVYLTYLAINEKLRGQGYGSKILMM LEDRFPDKQIVIDIEPVTKKAKNYKQRVSRLKFYERNGFHRTDRKLVDPDGEFEALTTGK KLDIDSFTRMLKQMSFGFYQAKVEK Prediction of potential genes in microbial genomes Time: Wed May 25 06:00:16 2011 Seq name: gi|256541334|gb|ACPV01000140.1| Lactobacillus crispatus 125-2-CHN cont1.140, whole genome shotgun sequence Length of sequence - 39033 bp Number of predicted genes - 38, with homology - 37 Number of transcription units - 19, operones - 7 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . - CDS 710 - 1072 355 ## BOV_0253 hypothetical protein 3 1 Op 3 . - CDS 1097 - 1489 265 ## SZO_14460 hypothetical protein 4 1 Op 4 . - CDS 1496 - 1903 344 ## ABC1055 hypothetical protein 5 1 Op 5 . - CDS 1903 - 2526 397 ## Shel_18760 hypothetical protein - Prom 2652 - 2711 10.9 - Term 2679 - 2731 7.3 6 2 Tu 1 . - CDS 2746 - 4518 1769 ## COG4716 Myosin-crossreactive antigen - Prom 4560 - 4619 7.4 + Prom 4519 - 4578 6.8 7 3 Tu 1 . + CDS 4624 - 5136 465 ## COG1309 Transcriptional regulator - Term 5133 - 5168 0.1 8 4 Op 1 . - CDS 5179 - 6645 1270 ## COG0477 Permeases of the major facilitator superfamily 9 4 Op 2 . - CDS 6678 - 6899 100 ## LCRIS_00555 putative protein without homology - Prom 7069 - 7128 8.2 - TRNA 6716 - 6788 86.4 # Val TAC 0 0 - TRNA 6793 - 6868 64.8 # His GTG 0 0 - TRNA 6875 - 6948 68.6 # Asp GTC 0 0 - TRNA 6953 - 7042 66.4 # Ser TGA 0 0 - Term 7103 - 7132 -0.2 10 5 Op 1 . - CDS 7133 - 7633 497 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 11 5 Op 2 . - CDS 7636 - 8985 1735 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase - Prom 9006 - 9065 3.7 12 5 Op 3 . - CDS 9067 - 10101 636 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Prom 10147 - 10206 5.8 + Prom 10205 - 10264 6.8 13 6 Tu 1 . + CDS 10499 - 11872 1484 ## COG1757 Na+/H+ antiporter + Term 11882 - 11943 14.3 + Prom 12423 - 12482 3.6 14 7 Tu 1 . + CDS 12529 - 12837 150 ## LCRIS_00549 putative protein without homology 15 8 Tu 1 . - CDS 12812 - 13159 384 ## LCRIS_00548 hypothetical protein - Prom 13403 - 13462 4.7 + Prom 13231 - 13290 8.5 16 9 Tu 1 . + CDS 13321 - 14031 813 ## COG0670 Integral membrane protein, interacts with FtsH + Term 14042 - 14097 15.5 17 10 Tu 1 . - CDS 14067 - 14732 451 ## LJ0238 hypothetical protein - Prom 14928 - 14987 8.8 + Prom 14816 - 14875 7.3 18 11 Tu 1 . + CDS 14904 - 15326 237 ## FI9785_309 hypothetical protein + Term 15363 - 15416 1.6 - Term 15352 - 15400 7.0 19 12 Op 1 2/0.250 - CDS 15440 - 16360 1057 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase 20 12 Op 2 21/0.000 - CDS 16385 - 17815 2097 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 21 12 Op 3 . - CDS 17820 - 19259 363 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 22 12 Op 4 . - CDS 19259 - 19459 274 ## lhv_0553 Glu-tRNA(Gln) amidotransferase subunit C - Prom 19501 - 19560 4.0 - Term 19504 - 19540 0.2 23 13 Op 1 4/0.250 - CDS 19579 - 20706 1385 ## COG4851 Protein involved in sex pheromone biosynthesis 24 13 Op 2 5/0.250 - CDS 20740 - 22746 1729 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 25 13 Op 3 . - CDS 22781 - 25027 2300 ## COG0210 Superfamily I DNA and RNA helicases - Term 25074 - 25105 2.1 26 13 Op 4 . - CDS 25113 - 25760 465 ## COG1705 Muramidase (flagellum-specific) - Prom 25782 - 25841 10.4 - TRNA 25846 - 25930 55.5 # Leu AAG 0 0 - Term 25803 - 25839 4.0 27 14 Op 1 . - CDS 26007 - 26465 437 ## COG3091 Uncharacterized protein conserved in bacteria - Term 26482 - 26517 3.1 28 14 Op 2 . - CDS 26525 - 27223 725 ## COG3774 Mannosyltransferase OCH1 and related enzymes 29 14 Op 3 . - CDS 27226 - 28656 1183 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 30 14 Op 4 . - CDS 28658 - 29812 891 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC - Prom 29839 - 29898 7.6 - Term 29842 - 29884 6.1 31 15 Tu 1 . - CDS 29902 - 32571 2697 ## COG0474 Cation transport ATPase - Prom 32650 - 32709 6.5 - Term 32587 - 32628 -0.9 32 16 Tu 1 . - CDS 32761 - 33912 633 ## COG0675 Transposase and inactivated derivatives - Prom 34092 - 34151 6.0 + Prom 33715 - 33774 3.5 33 17 Tu 1 . + CDS 33869 - 34105 89 ## + Term 34157 - 34188 0.1 - Term 34098 - 34140 9.6 34 18 Op 1 5/0.250 - CDS 34272 - 35102 1173 ## COG0171 NAD synthase 35 18 Op 2 . - CDS 35099 - 36595 1666 ## COG1488 Nicotinic acid phosphoribosyltransferase 36 18 Op 3 3/0.250 - CDS 36664 - 37755 878 ## COG0438 Glycosyltransferase 37 18 Op 4 . - CDS 37766 - 38497 726 ## COG1922 Teichoic acid biosynthesis proteins - Prom 38586 - 38645 7.9 38 19 Tu 1 . + CDS 38624 - 39010 386 ## COG0615 Cytidylyltransferase Predicted protein(s) >gi|256541334|gb|ACPV01000140.1| GENE 1 193 - 726 177 177 aa, chain - ## HITS:1 COG:no KEGG:RALTA_A0936 NR:ns ## KEGG: RALTA_A0936 # Name: not_defined # Def: putative zinc-dependent metallopeptidase # Organism: C.taiwanensis # Pathway: not_defined # 11 174 4 168 175 106 37.0 5e-22 MRDIISYDSIFEVKPESRKDLRALARDVRLLLGINPCQLYIDITRVLEKISELDPNFSFE IVDNDELEYDVQAQTDIVKDKILIKESVYMGAIRNVGRDRMTIAHELLHLILHQPSSLTL YRRNGEIPIYKNPEWQAECFAGELLMPYERIKNMSESEIVDKCKVSQIAAHYQLTHI >gi|256541334|gb|ACPV01000140.1| GENE 2 710 - 1072 355 120 aa, chain - ## HITS:1 COG:no KEGG:BOV_0253 NR:ns ## KEGG: BOV_0253 # Name: not_defined # Def: hypothetical protein # Organism: B.ovis # Pathway: not_defined # 4 117 3 116 118 75 37.0 7e-13 MTYTALGKFLRKLRVDRDERLYDMAENVGVSSAFLSGVENGHKKASASLINNIVDRYNLD REQEQELKDALSISEESLDISKFSPEKQEATLMFARKFDDLTDKQIAQIQKILKEGERHN >gi|256541334|gb|ACPV01000140.1| GENE 3 1097 - 1489 265 130 aa, chain - ## HITS:1 COG:no KEGG:SZO_14460 NR:ns ## KEGG: SZO_14460 # Name: not_defined # Def: hypothetical protein # Organism: S.equi_zooepidemicus # Pathway: not_defined # 1 124 1 122 126 62 32.0 7e-09 MYELTKIINYEVTRDLVLESQKTNQSYTVFDDSDILGDDKFNFLKTGNRYSCRISILGDL SDSVSGTKFKVIGQEKVGGVKFRKVFNSVGDLFYLPAYDTKESNSIIYLNVKRYDLLSVN EIIYNKDFRK >gi|256541334|gb|ACPV01000140.1| GENE 4 1496 - 1903 344 135 aa, chain - ## HITS:1 COG:no KEGG:ABC1055 NR:ns ## KEGG: ABC1055 # Name: not_defined # Def: hypothetical protein # Organism: B.clausii # Pathway: not_defined # 17 131 35 152 156 62 34.0 4e-09 MGSGYKGYINTNGAKERLKPKDLMHELENSNAKYNKSDIVMITKNYAGKLMWLEKGNLKS GLLHIKTRHGKDFGSNTNIPLLAKKILQLKPIKHISRKEGKQLADVFIYNHNGMIYLIAY GDNGYIVSFYPIGKA >gi|256541334|gb|ACPV01000140.1| GENE 5 1903 - 2526 397 207 aa, chain - ## HITS:1 COG:no KEGG:Shel_18760 NR:ns ## KEGG: Shel_18760 # Name: not_defined # Def: hypothetical protein # Organism: S.heliotrinireducens # Pathway: not_defined # 48 197 3 151 161 121 37.0 1e-26 MSNLLNANFTGEDEYPVLNKQKEDLVIPFQMIRFSDRKIASLNDAICFYEWDKSFESKLK DERIAKLVPSLLKAGSVVQPDYSIYADEPLVLQKFAVYEKNRVALELQNYGLNIIPNLRW GDKRSYDFVFQGIPKHQVCSVGTYGQIADKEKRILFEAGLEIALEKVRPKKVLVYGTMPD DIFGPYKRNIKFIRYPSWQEIFAKEAC >gi|256541334|gb|ACPV01000140.1| GENE 6 2746 - 4518 1769 590 aa, chain - ## HITS:1 COG:SA0102 KEGG:ns NR:ns ## COG: SA0102 COG4716 # Protein_GI_number: 15925810 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Staphylococcus aureus N315 # 1 590 1 591 591 738 58.0 0 MHYSNGNYEAFVKADKPKDVDQKSAYIVGSGLAALATAVFLIRDGQMKGEKIHIFEELGL PGGSMDGIYNKEKESYIIRGGREMEPHFECLWDLFRSIPSPDHEGESILDSFYRLNRKDP SYAKTRVIVNRGQALPTDGQLLLTPKAVKEIVDLCLTPEKDLQNKKINEVFTKEFFESNF WLYWSTMFAFEPWASAMEMRRYLMRFVQHVATLKNLSSLRFTKYNQYESLILPLVKYLKD RGVIFHYNTVVDNIFVNRSDGEKVAKQIILTEDGEKKTIDLTPNDLVFVTNGSITDSTTY GDQLHPAPAEHELGASWRLWKNLAAQDEDFGHPDVFCKDIPKANWRMSATITFKNDDVVP FIEAVNKKDPHSGSIVTSGPTTIKDSNWLLGYSISRQPHFKAQKPNELIVWLYGLFSDTK GNYVEKTMPDCNGLEMCEEWLYHMGVPEERIPEIAAAATTIPVHMPYITSYFMPRALGDR PKVVPDHSKNLAFIGNFAETPRDTVFTTEYSVRTAMEAVYTLLNIDRGVPEVFASAFDVR MLMNAMYYLNDQKKLADLDLPMPEKFAIKGMLKKVKGTYIEELMKKYKLM >gi|256541334|gb|ACPV01000140.1| GENE 7 4624 - 5136 465 170 aa, chain + ## HITS:1 COG:L108801 KEGG:ns NR:ns ## COG: L108801 COG1309 # Protein_GI_number: 15674221 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 2 160 6 180 204 70 29.0 1e-12 MNMKSLHTQQQIEHALFKLLQKKPYTEISIAEITRKAKVSRTSFYRNYDQKDEVIAQFLF NQYHNFIADIDQHNLRTFKQQLTAYLEFFKDNPQLMKLLLDAGFERELLNFQTKYLKKLM SVYHSDVHLPDYAIAYQSGGIYMLLVWWVKQNYQTSLTDLITYAEKHIML >gi|256541334|gb|ACPV01000140.1| GENE 8 5179 - 6645 1270 488 aa, chain - ## HITS:1 COG:L35134 KEGG:ns NR:ns ## COG: L35134 COG0477 # Protein_GI_number: 15672220 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 476 1 477 486 257 33.0 4e-68 MNKKQITMVTAALMLGNVMSGLDGTIINTAIPAIVAALHGIQFMGWIVAIFLLGMSISIP IWTKIGEKITNKRAFELSLLLFVLGSALQGIAPNIIFFLCSRFIMGIGAGGMGSLPYIIA GYVFKNIKTRTKVLGYLTASWNGAAILGPLVGGWLIDAFSWHWVFYINIPIGLIAFLICL IYYKPVTPKKTPVFDIPGATLLVIGLLLFLMGVQLVGLTANWIIIGLIIISLVFIVFFFI REGHADNPIIPISLFKNKDLDGDFLLFAFTWGAFLAVNTYMPMWAQALLGLSALIGGMTL IPNSIVEIIASQSVAAIQEHMTTFKLVLIGIVAMIISSAGLFISGIHTPVQMLTFIGAFS GIGVGFIFVALQLKVQLDAGLKNMATATSTSYLIRILAQTVMAAVYGVIMNLNLASGVQT HKGITMTMMNKLSDARSAKSLPQNLVPTMRTIFHGGIKEIMLVSLILLIIAFVMNFYFNF GKKCKKLQ >gi|256541334|gb|ACPV01000140.1| GENE 9 6678 - 6899 100 73 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00555 NR:ns ## KEGG: LCRIS_00555 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 73 1 73 73 139 100.0 2e-32 MGSNPIWTVDGGIGEGVNTLVCGSSMRGFDSHIPPHNGGLAQLGEHLPYKQEVTGSSPVS SIFFYSKALEIFV >gi|256541334|gb|ACPV01000140.1| GENE 10 7133 - 7633 497 166 aa, chain - ## HITS:1 COG:SMc03241 KEGG:ns NR:ns ## COG: SMc03241 COG0454 # Protein_GI_number: 15966842 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Sinorhizobium meliloti # 11 143 15 149 168 64 26.0 8e-11 MIIKPLISEDEAKQTSKLFQTTWKETYKGVLPDVFLDNIPATAWVKRLNESGRHNLVFKD DNNEVQAAVSYGRPRDTRMLGCGELMALYVKPDFQGYNVGKTLLNAAENELKKMGYGKIY LWCLAEDKDAQEFFKHFGWRNIATQRFIEIAGKEYKYLLFQKNLHS >gi|256541334|gb|ACPV01000140.1| GENE 11 7636 - 8985 1735 449 aa, chain - ## HITS:1 COG:SPy1346 KEGG:ns NR:ns ## COG: SPy1346 COG2265 # Protein_GI_number: 15675282 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 448 13 462 462 424 48.0 1e-118 MKKNQIIDLEITDLSYEAMGVAHYEGMTVFVTNALPGEVVSAKILKVKKNFAFAKIEEIK KESPDRVKIKLNQWVQTGLASLAHIKYDKQLEFKRNQVVNLLKKAHLDEIEVGQTLPSPE QTGYRNKAQVPVREYNGQLEIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDVLRKYKI APYDEVNNTGIIRYLDVRRSKANGEIMVILVSRVKDFPQMMGVAAEISQIPKVSGLVLNY NPKKTNVILGKKDYLVFGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLG SDDVVIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEE IMPRWAKKGMKTDVVFVDPPRKGLTPEFINATVKTGPKKVVYISCNPATMIRDLLLFQEQ GYEFKRIDPVDMFPQTPHVEAVTVLTKKK >gi|256541334|gb|ACPV01000140.1| GENE 12 9067 - 10101 636 344 aa, chain - ## HITS:1 COG:BS_pbpX KEGG:ns NR:ns ## COG: BS_pbpX COG1680 # Protein_GI_number: 16078758 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Bacillus subtilis # 35 334 81 384 391 79 24.0 9e-15 MHKKRALSIFLALCAFAIFLFIVQPGDKLDNGIKNQKEQLHDYMKFHHINGVMLINDKKG QPIVVQNKETTDSSQIVNANQLFPIASLQKIMTGTAIYQLQQEKLLGWNTSLSNYYPQVS GSKDITIHGLMNHTSGLVNNARPSSPLKNQKEQIAYMLNHMENDHLHTWDYQDVDYELLA AIISKQTNLSYNAYIQTDFAKPLKLQKVKDFSEVNQNEIPQPMSKNVDWHQVTVTTSSDF GAGNLFMSPIDYWKFVYNDVLKNPKMVNEYYHQAQHQTVAYFGGVYFNGDIIRANGSIPG YNCCFVANYKTKRMIMLFSNNINYLRLKVAANHILHAYMGDSWF >gi|256541334|gb|ACPV01000140.1| GENE 13 10499 - 11872 1484 457 aa, chain + ## HITS:1 COG:BS_nhaC KEGG:ns NR:ns ## COG: BS_nhaC COG1757 # Protein_GI_number: 16078033 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Bacillus subtilis # 3 445 4 449 453 293 37.0 3e-79 MKKEKISFTESIIILIALLAILGIAVIKFSLSPEVPVLFTVLLLTFWARLRGFSWQDVQD GIKEGIGVAIIPIFIFILIGALIGIWIKAGIIPSIMVLGFHLISGSFFVPSVFIVCSIIG MAIGSGFTTISTVGIALFGIGTSMNINPALVAGAIISGAVFGDKMSPLSDSTNLSSAVAE SELFAHIKNVMWSTIPAFIVSLILFWILGNSGHMDLTKIEHTSRILQANFSITWWALIPI ILMIFCAWRKIPAIPTLFMNIAVTVIMIFIQSPHESIQSLNNLVMNGFVAKTSDKAVDAL LTRGGISSMMATVALIISTLSLGGMLMKFNVIQSAMEPLVKHLKKPGRLITVTILSGICI NLFVGEQYLSVILPGRAFKPAFDKIKLSPLALSRVLEDGGSVINYLIPWGVAGSFAASTL GVPVLQFLPFVFFSLLSPIFSILSGITGIGLKWVKEK >gi|256541334|gb|ACPV01000140.1| GENE 14 12529 - 12837 150 102 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00549 NR:ns ## KEGG: LCRIS_00549 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 102 121 222 222 148 92.0 5e-35 MAIYALAVIFLTYLICIAQKVFNMNHWLKSIHFLAFYAYRAFLANVFWDRIFWQYFNFKQ LALQNIYLAVLLLWICTWCASYLSVYVIHQLWIKINDSVDPS >gi|256541334|gb|ACPV01000140.1| GENE 15 12812 - 13159 384 115 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00548 NR:ns ## KEGG: LCRIS_00548 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 115 1 115 115 163 86.0 2e-39 MKKRYIDDDVRGQRSEHPDKIGEFNRKMILSFTKAAADKYHQLTSSQKAFIDRELDDLKF NQNSTINKKVNAELDQAIVFERNDHEIIVTDIIAQPTRDSQEYRRAQIRMDRQNH >gi|256541334|gb|ACPV01000140.1| GENE 16 13321 - 14031 813 236 aa, chain + ## HITS:1 COG:SPy0358 KEGG:ns NR:ns ## COG: SPy0358 COG0670 # Protein_GI_number: 15674509 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Streptococcus pyogenes M1 GAS # 14 230 9 226 229 117 40.0 2e-26 MDNFSNTPGRRQVQDISAVNSFLTKMYSLMILAVLVSAATAFLTTTVFASAIANMSQAVY WIIIFVPIVLCMTISFKAAKNPTLGLVLLLILSAVYGFEFAFIAGAFTTASIAGAFLSAA GVFAAMAIFGTVTKRDLSNWGSYLGAALIGFLVAWLVNAFFIRSGAATFIFSCIGVLLFT GLTAYDAHNAKKIYMTYGGQVSDTGLAVMGALNMYLDFINIFMFLLQIFGMGGNRD >gi|256541334|gb|ACPV01000140.1| GENE 17 14067 - 14732 451 221 aa, chain - ## HITS:1 COG:no KEGG:LJ0238 NR:ns ## KEGG: LJ0238 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 2 204 3 205 210 221 55.0 2e-56 MDIRVTNTKNRLVEALLTCLEEKSVYELKVKDIIEVSGVSTRTFYQYYADVNSLVADVEN DFIEGYKDSIRRDRESLANIDMTLPTQDQLKAVLSATKNTISYCFDHKREIQLLLSDNGD IRFYNLIFDTSCDEFFERINSMDDSQGIKLTGKERIAMLIDVQVFINSMIDLVRVLLNYS DRLSPYDMRENIMAFLHKTPLDELTSFLKKDKKSSNKNSVD >gi|256541334|gb|ACPV01000140.1| GENE 18 14904 - 15326 237 140 aa, chain + ## HITS:1 COG:no KEGG:FI9785_309 NR:ns ## KEGG: FI9785_309 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 18 140 6 127 130 98 48.0 8e-20 MFNQNKIIIFNNRKNNCSKNYTLPMHDQKLLKQFQSSLLDDITYYPFHPLRHINKTFVRF ISTSGKPLFNDFVYHLQTRELILNDLILISYKYLVRNKANIAYSDLRKNWVNVFNLSFCT NDIKFNKEALLNKINEANKM >gi|256541334|gb|ACPV01000140.1| GENE 19 15440 - 16360 1057 306 aa, chain - ## HITS:1 COG:L26628 KEGG:ns NR:ns ## COG: L26628 COG1597 # Protein_GI_number: 15672402 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Lactococcus lactis # 4 304 3 302 342 332 55.0 6e-91 MTRKARLIYNPVSGHEQMPKNVADILDVLEQAGYEASAFRTTPEENSARNEATRAAKEGF DLIVAAGGDGTINEVVNGIAFLENRPKMAIIPAGTTNDYARALAIPRDNIPDAAKVILKN KTRKMDIGKAVFGDQIQYFVNIAASGSLTELTYGVPSEVKSALGYAAYLIKGAEMLPHLT ENEMRLTYDDGVYEGKLSMFLLGMTNSIGGFEQVMPDAQLSDGLFQLIVVKPSDPVSMMK LMALALNGKHVDDPNIIYTKTRSLKAELIGKSEGQDLPVNLDGEIGGYCPVEFNNLQQHI EFYVGG >gi|256541334|gb|ACPV01000140.1| GENE 20 16385 - 17815 2097 476 aa, chain - ## HITS:1 COG:BH0667 KEGG:ns NR:ns ## COG: BH0667 COG0064 # Protein_GI_number: 15613230 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Bacillus halodurans # 1 476 1 476 476 580 61.0 1e-165 MNFKSTIGLEVHFELKTKSKIFSPSPVTYGAEQNTETNVIDWAMPGTLPMVNKNVYRLGI MVAIATHAHILPTTHFDRKNYFYPDNPKAYQITQFFQPLARDGYIEVEVRGKKKRIGIHE MHIEEDAGKNTHGTNGYSYVDLNRQGVPLLEVVSEPDMEDPEEAYAYLEKLRKIVQFTGA SDVKMEEGSMRVDTNISIRPAGQKELGTKVEMKNLNSFDHVRRSLAYEEKRQEQVLLAGG HIQLSTRRFDEATGKTVLERVKEGASDYRYFPEPDIAPDHISQEWIDEIAKELPKGPFAR YDDYVNKYGLKPYDANVLLQTKESSDFFDEAVAAGADPTLAANWMNTQVNGYLNDHRIEL KDIKLTPEHLAEMIKLIKDGTISSKIAKKVFAETIENGTDPKKYVEDNGMVQLSDTSVLA PMVKKVVDDNPQSVEDFKNGKDRAIGFLVGQIMKQTRGKANPKMVNKLLNQELQSR >gi|256541334|gb|ACPV01000140.1| GENE 21 17820 - 19259 363 479 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 63 448 72 436 468 144 31 8e-34 MNYLNENIDSLNKKLASGDLSADKLAKDTVANIKDTDKKLNAWITVLDDAKPADNLDYSK SKLAGIPIAIKDNIITNGIKTTAASHILYNYMPMYDATVISKLKKAGVTFVGKTNMDEFA MGSSTEHSYYGATHNPWNLDKVPGGSSGGSAAAVASGQVVAALGSDTGGSIRQPAAFNGI FGIKPTYGRVSRWGLIAFGSSLDQIGVMTKRVKDSAEVLNVIAGADEHDSTVSTREVPDF TKFIGQDVKGLRVAVPKEYMEAVDGKMREVIQKQIDALKDAGAVINEVSLPHTKYVVPDY YIIASSEASSNLQRYDGIRYGYRAKDTKNLLDVYVKSRSECFGAEVKRRIMLGSFALSAG SYDRFFRQAAKVRTLICDDFDKIFAENDVIVGPTTTEPAFGIGEEVSDPIKMYNNDILTI SANLAGIPAASVPAGLVDGMPVGLQVMAKRFDEGNVFKTADFIERTNKFYEKTPTGMED >gi|256541334|gb|ACPV01000140.1| GENE 22 19259 - 19459 274 66 aa, chain - ## HITS:1 COG:no KEGG:lhv_0553 NR:ns ## KEGG: lhv_0553 # Name: not_defined # Def: Glu-tRNA(Gln) amidotransferase subunit C # Organism: L.helveticus # Pathway: Aminoacyl-tRNA biosynthesis [PATH:lhe00970]; Metabolic pathways [PATH:lhe01100] # 1 66 46 111 111 110 96.0 1e-23 MADQLSEVDTEGVDETVQVVDRDTVFREDKPEHWQGQDRETLMANVPEKANGYIKVPVII NKDEDE >gi|256541334|gb|ACPV01000140.1| GENE 23 19579 - 20706 1385 375 aa, chain - ## HITS:1 COG:lin1869 KEGG:ns NR:ns ## COG: lin1869 COG4851 # Protein_GI_number: 16800935 # Func_class: R General function prediction only # Function: Protein involved in sex pheromone biosynthesis # Organism: Listeria innocua # 1 372 6 370 371 238 38.0 2e-62 MALAGIALTLSGCGKLKDSSLANNATTTSTTKKKSYQTTNTGTNGYTVLMKNGRYNISPI AGLTATDNDNSVDTRELERGLIQISKNQFSPNQYVFQEGQYLDTSTVTDWLMRKSKSNPD GLNPVNNGKTGTDTRNPIYLEEIIEQDYLTGSGSKYNLGGMSLGLAMNSVDYYQKKRNGA EFQTTISRAEQKAQGEKIANEIVARLRKKKALKNIPITIGLFSKTGKDSLVGGTYFAYGT AAANSSKISKWKSMSEKMQVLPTTGSEKAINSDDASHFNDFKTAIQNYFPNISGVTATLR YTNGKLSQENISVTTQFYGYEQIQSFTRLVLSSAKKYLSGNIPIEIKIGSVDDVQALVAK ETGDSDYQVHVYGGE >gi|256541334|gb|ACPV01000140.1| GENE 24 20740 - 22746 1729 668 aa, chain - ## HITS:1 COG:SPy0751 KEGG:ns NR:ns ## COG: SPy0751 COG0272 # Protein_GI_number: 15674800 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Streptococcus pyogenes M1 GAS # 10 661 2 647 652 641 52.0 0 MAEITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVTP DSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRMQKLVGHPVEYNVELKID GLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPEPLTTEVRGECYMSKEA FAKLNAEREEQGLAVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEEITSQHQA IQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKIDDLGIEQELGN TVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVARASLHNPD YLNEKGIRIGDTVKLHKAGDIIPEISEVVMAKRSADSVAYQIPTTCPSCGQKLVHLEDEV ALRCINPSCPAQVEEGITHFASRPAMNIAGLGPKIVKQLIAKDLVHNVADLYHLTADDLA QLDHFKEKSINNLLTALDNSKQNSVELLITGLGIDHVGAKAARLIAQKFKNLAKIMSLDV QEIASIDTIGMTIAESMTTYFAQPEAQKVIDELRESGLNMDYLGADEPAEIEDNPFKDKT VVLTGKLEHYTRSEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTE EEAIAQIE >gi|256541334|gb|ACPV01000140.1| GENE 25 22781 - 25027 2300 748 aa, chain - ## HITS:1 COG:SP1087 KEGG:ns NR:ns ## COG: SP1087 COG0210 # Protein_GI_number: 15900955 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Streptococcus pneumoniae TIGR4 # 5 747 3 761 763 746 51.0 0 MSEKSILAGLNPQQKEAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAI TFTNKAASEMREREQKLLGPAANDIWMSTFHALCVRILRRDADKIGYGHNFSIADSAEQL TLVKHIEKDLNINPKMYDPRGILAAISNGKNDLLDPEAFMQSASSPFEKMAAKVYEEYQR RLRRDQIMDFDDLIMQTLVLFKKDSEVLHYYQNKFRYLLVDEYQDTNQAQYELCHALAAQ YKNICVVGDADQSIYGWRGANMENIMNFEQDYKKYDVKTVKLEQNYRSTGHILSAANSVI KNNQNRKAKNLWTDQGDGQKVTYYQAQSGDDEAHYIISKIQEEVKDKKRAYKDFAILYRT NAQSRTVEEAFVKSNIPYQIVGGHKFYDRKEIKDVMAYLKLVANPADTMSMNRIINTPKR GIGAATVDKLITFADENHYNILDAMGHVAESSINTRAAKKLSDFGTKLRDAITYAQNGTV TGLTEKILTDFDYTDALRAENTIESETRLENLDEFLSVTKRFDDHYEPEEDESNPLSDFL AEVSLLSDQDDLDEDDNQVALMTLHAAKGLEFPVVFLIGMEDGLFPLQRAMMDDNELEEE RRLAYVGITRAKQELFLTNAYSRMMYGRMQNNPPSRFLDEIDEQDLHKEENEKLQSSFTQ SSFEKQTAPFARKAERARAEVYTAKKASGAIGAEKKGWNVGDQVEHKAWGHGVVTKVNGT GEDMELDIAFPGKGIKRLLAAFAPIKKV >gi|256541334|gb|ACPV01000140.1| GENE 26 25113 - 25760 465 215 aa, chain - ## HITS:1 COG:L2183 KEGG:ns NR:ns ## COG: L2183 COG1705 # Protein_GI_number: 15673347 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 1 215 1 205 209 168 43.0 6e-42 MARKRKSRVPKSVKTVVRVFVILFILMVAFVGFRYYRRYAIQSEQIRQAQLQKEQEAAKL LKQKKDFIKKIGPIAREVDKSYDLLPSITIAQACLESNYGQSDLSQKYNNLFGVKGSNPN TSAVMTTKEYVKNKWVTVKARFQIYDSYEASIRAHARLFQNGTTWNHDQYKHVLASKDYK TQAKALVTDGYATDPDYADKLINLIEQFDLEKYDK >gi|256541334|gb|ACPV01000140.1| GENE 27 26007 - 26465 437 152 aa, chain - ## HITS:1 COG:BS_ydcK KEGG:ns NR:ns ## COG: BS_ydcK COG3091 # Protein_GI_number: 16077546 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 146 1 146 150 139 47.0 2e-33 MNENELQNLVEEISIKYFDRPFKHRVKINRRMTTTGGRYHLDDHHLEINAHFLVPQYHDY LVGIIKHELTHYHLHLLGLGYRHRDRNFKILLKKVGGSRYAPDIGLRKKKKYRYLYLCEN CGLRYPRMRRINTQKYRCGKCRGHLRLAQTFA >gi|256541334|gb|ACPV01000140.1| GENE 28 26525 - 27223 725 232 aa, chain - ## HITS:1 COG:FN1241 KEGG:ns NR:ns ## COG: FN1241 COG3774 # Protein_GI_number: 19704576 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannosyltransferase OCH1 and related enzymes # Organism: Fusobacterium nucleatum # 1 159 1 157 243 134 45.0 1e-31 MIPKKIHYVWVGHNPKSPIIEECIATWKKKLPDYQIIEWNEDNFDMHENRYIEQAYAAKK WAFVSDYVRARAIYEQGGIYLDTDVRVVDKLDSLLNASAFIGFENHDYLSAAIFGAEKGH PFMQDILDYYQDRDFEYDTKNQMAGVNSISVTEMLVNKYGLKLGNQEQVLKDGIHVYSDG VLCNPSKDSKSIHLFTGTWMDGKKSFKHDLVTFLKRHISTPKQAGMYAKIFR >gi|256541334|gb|ACPV01000140.1| GENE 29 27226 - 28656 1183 476 aa, chain - ## HITS:1 COG:SA0127 KEGG:ns NR:ns ## COG: SA0127 COG2244 # Protein_GI_number: 15925836 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 7 471 9 473 476 134 24.0 3e-31 MRKTFLNILYNAVYQIFIVLVPLITVPYLSRVLGPKTYGIYSSVNNTVQFLMIFCILSVS YVGMRTISRTRTYGTPQELTNAFWGLWYFQGIAGIITILVTVFVATVFHVQYWFYILLMV PYLISAQVDISWFFQGLADFGRVVLKNMAVKLVSVVLILLWVKSPADLWKYLLIMSVSTM LGSFVFWFDIWRYVGKPVAHFYKFKQTAIAIGTLMIPQIATQIYTSLDKPILGWFSNSTQ VSFYDNSQRISNMILGVITSISLVIMPKMASEGKKAQKIVMKKSLEATVMLGTLFAVIIM ANTKQFVPFFFGNKYVPMTPLMFWFTLTIIMIPTGGVFANQFALANQRDKDYAVPVVIGA ILEIVLSYLLDRPYGAVGAMIAILITEAVVLILRLWVVRDGYEFSYVFHDVPKYLLIAVL TLAIGMFMPNIIPSAFFNMAFKSIVMLIIYLTLMFLFKLDFNDDIVKLIKNFLKRG >gi|256541334|gb|ACPV01000140.1| GENE 30 28658 - 29812 891 384 aa, chain - ## HITS:1 COG:MTH365 KEGG:ns NR:ns ## COG: MTH365 COG1887 # Protein_GI_number: 15678393 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Methanothermobacter thermautotrophicus # 81 369 115 399 409 114 27.0 3e-25 MKSFLFRLYLAWMSFLARFTTMENNNVVILNGSGRSGSNGYAFYKWLQLNHPEYNVTLVE PWPSSHLKWKTWQKIGAARYVITTHQPFKVRKHQINVQLWHGVPLKRMGIMANNTKRRDN RRNEKLWHKNADIVASSSDLYESLMSACMAIETKKYRKLGFPRLDLLAKPVISKKQLLAD LFKTEDDQAQIGIYMPTFRYELEDKSIMEKIKERNFFAFRDFDVEKLNTELKKRHQYLIV KLHPYEMRLFANFKSSYSNIAFMNNDYLFDHNYDLYELLGDTDFLMTDFSSIYFDYLHLN KPIVFVTNFLEQYEKTRGLLMGPYAEITPGICVNSEDELIRNLDQLDNQQIANRRLYWLH LTNQVHGDSYCENVFKYMTQEYRG >gi|256541334|gb|ACPV01000140.1| GENE 31 29902 - 32571 2697 889 aa, chain - ## HITS:1 COG:SPy0623 KEGG:ns NR:ns ## COG: SPy0623 COG0474 # Protein_GI_number: 15674699 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pyogenes M1 GAS # 3 889 8 889 893 979 60.0 0 MAKKYYVESIPDIEKDLNTSVKDGLSASDAKARLEQYGPNALASKKKQSMFMRFIDQFKD FMIIVLIIAAILSGVLAHEWTDAAIIMIVVILNAILGVFQEARSEAAIDALKEMATPDAH VRRDDTIVTIPSTELVPGDVVLLEAGDVVPADLRLNQAHSLKIEESALTGESVPVEKHAE TLEGEDIALADRVNMAYSNTNVTYGRGEGIVTSTGMHTEVGKIATMLNNADETDTPLKRN LNQLGKTLTIMILAICVIVFIVGVLKADPAERNSTLMINMFLVAVSLAVAAIPEGLPAIV TIILALGTQTMAKHKAIVRKLPAVETLGATDIICSDKTGTLTQNRMTVEKVFYDKKLHDN SESISENNPALLAMTLANDTKIENGGDLLGDPTETALIQFAFDQNIDVTDLLEKYKRIQE VPFDSERKLMSTVNKDGEQYFVAVKGAPDMLLQRVTRIENGGQVEPITDKQKQNILAQNK QMAQQALRVLGLAYKKVDQLYTDPTTDNVEQDLIFAGLVGMIDPERGEAKAAVAEAKSAG IRTVMITGDHQTTAQAIAERLGIIEKGQDSRVLTGAELDKLDDEYFKQHVGDYSVYARVS PEHKVRIVKAWQANDKIVAMTGDGVNDAPSLKQADIGIGMGITGTEVSKGASDMVLADDN FATIVEAVKQGRKVFSNIQKAILYLMSCNVGEVLTVFMMTMLGWDILAPVQLLWINLVTD TLPAIALGVEPVEVGIMKRKPRGKKSNFFSGGVASSIIYQGILEGILVLGAYQIGLHVGP HVGDPSLQHGDALTMAFLTLGLIQLFHAINSKYVHQSIFRPHTFSNKWFNGAIIIAAVIM AAVELPFMTKFFDVTELDGPQWLVILIAGILMVLIVEIVKFCQRKMGKE >gi|256541334|gb|ACPV01000140.1| GENE 32 32761 - 33912 633 383 aa, chain - ## HITS:1 COG:TM1044 KEGG:ns NR:ns ## COG: TM1044 COG0675 # Protein_GI_number: 15643802 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Thermotoga maritima # 1 379 4 370 405 120 27.0 5e-27 MIKTQVAELKPNKTMQRELDRLCDYRRYCWNLALETWQDMYEARTLNKDNNPSPNECRVR DELVNNKADWQFALSARCLQLAVKDLANAWKSFFDKAQLDWGKPHFKSKKAPRQGFKTDR VKVINGKLRLDKPRGIKSWFDIPTYEALRMKQVKIASIFRERGHYYAALSYEEKAGIKVK TGKKTAIDVNVGHFSYTEGRINILPARLQKLYKRIKHYQRILAKKKRVNGKLAGRSNNYV QVRTKLQRDYRRAFNIQNDLLQKFTTELANNYDQIVIEDLNVKQMMMTHVASKGIQRSLF GKFRQILSYKCAWYDKELILADRSYPSTQRCASCGYVKNGADKITLQGNRKHGTKHNEYV CYECGYSNDRDDNAVLNLLALTK >gi|256541334|gb|ACPV01000140.1| GENE 33 33869 - 34105 89 78 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVLFGFSSATCVLIIYFTSNANINLAKDETKTSEQNIKFLAAANLFLCFIFLIKLTASFS IYCYQILSFSQSLFPPQK >gi|256541334|gb|ACPV01000140.1| GENE 34 34272 - 35102 1173 276 aa, chain - ## HITS:1 COG:SP1420 KEGG:ns NR:ns ## COG: SP1420 COG0171 # Protein_GI_number: 15901273 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Streptococcus pneumoniae TIGR4 # 4 275 3 274 274 371 68.0 1e-103 MRELQKEIIAYEHVLPEIDPKKEIRRSIDFLKDYLKANPFLKSYVLGISGGQDSTLTGKL CQMAIEEMREETGDDSYQFIAVRLPYGVQADAQDAADAVAFQKPDQDLIVNIKEPVDAMV KVVEATGQKITDFNKGNIKARQRMVVQYAIAGANKGAVVGTDHAAENFSGFYTKFGDGAA DLTPLFRLDKRQGKALLKELGCPKHLYEKAPTADLEEEKPDLPDEVALGVTYQEIDDYLE GKEVSDKTADQIEKLWNKSKHKRHLPVTVFDDFYKK >gi|256541334|gb|ACPV01000140.1| GENE 35 35099 - 36595 1666 498 aa, chain - ## HITS:1 COG:L107468 KEGG:ns NR:ns ## COG: L107468 COG1488 # Protein_GI_number: 15673082 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Lactococcus lactis # 10 491 7 487 495 672 67.0 0 MTEREAMFYPELAKDDSLALHTDLYEINMMYTYFKKGIADRNAVFESFYRREPFGNGYAV YAGLEHIINYLKNLKFTESDLQYLKENEGYDDDFIDYLRNLKLKLTIRSMKEGELVFANE PILQVEGPLAQCQLVETAILNIINFQTLLATKAARIKLAVKDDGLMEFGSRRAQETDAAI WGARAAYIGGFDSTSNVRAGKLFGIPISGTHAHALVEAFGSEYDAFKAYAETHKNCVFLV DTYDTVRSGVPNAIKVANEMGDKINFLGVRIDSGDMAYISKQVRKELDDAGYPDAKIFAS NDLDENTITNLKMQGAKIDVWGIGTKYITAYDQPALGAVYKLVAMEDELGAMRDTLKISS NAIKVSTPGKKQVWRISANTAKKNEGDWVSRYNEDPRKFDALFMFHPQYNYINKVVTDYT AIPLLHDIFKDGKLVYDQPSLDKIKKFCADNLDGLWDEYKRSLNPQEYPVDLSQNLYESK MDLIQDIRRKIRERSIGR >gi|256541334|gb|ACPV01000140.1| GENE 36 36664 - 37755 878 363 aa, chain - ## HITS:1 COG:PH1844 KEGG:ns NR:ns ## COG: PH1844 COG0438 # Protein_GI_number: 14591592 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Pyrococcus horikoshii # 18 359 36 374 381 94 27.0 3e-19 MKVLHVNAGLENGGGLSHIVNLLTEAKNEGKDFELLTLAEGPVAQAARAAGITTHVLGAN SRYDLGSLGRLTKFINEGHYDIVHTHGARANLFLSLIHKRIRAAWCITVHSDPYLDFEGR GIIGNIFTKLNLRALRKADCIFVVTQRFARLLINRAHVDKNKVHVIYNGIFFHSDSEIPA KYEHTYFNIINVARTEKVKGQELLLKAVKKLDDQHIRLHIAGDGSQLEALKALTRQLDMA PQVTFHGFMTQHQLSGLYKRIDLAVLTSYSESFPLVLLEATDNLIPILSTDVGDIHKMIP GPEYGFIAKTGDIDSIAKEINLAVNKTHEELRQMANTEKRYAEEHFSIKNQLDSIEKVYL TLR >gi|256541334|gb|ACPV01000140.1| GENE 37 37766 - 38497 726 243 aa, chain - ## HITS:1 COG:lin2665 KEGG:ns NR:ns ## COG: lin2665 COG1922 # Protein_GI_number: 16801726 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Listeria innocua # 3 243 5 241 244 191 42.0 8e-49 MSKVNILGVDFDNKTFNQFQNEFINRLNNHLSTFIVTANPEIVMAANENPEFMKILKNDP DYITADGIGIVKAAKMLKQPLPERVTGYDLFTWLMDVANDRGSRVYLIGAKPQVIHAVQS KIAKEYSNINLVGAEDGYFTEDLELVARRIQKAQPDMVFAALGFPKQEKLLSILRKNETP ALMMGVGGSFDVFSGIVKRSPEAFQKTHLEWFYRLITNPSRFKRMLVLPQFVVRVKQSKK KGK >gi|256541334|gb|ACPV01000140.1| GENE 38 38624 - 39010 386 128 aa, chain + ## HITS:1 COG:lin1076 KEGG:ns NR:ns ## COG: lin1076 COG0615 # Protein_GI_number: 16800145 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Listeria innocua # 1 128 1 127 127 188 73.0 2e-48 MKRVITYGTFDLLHYGHVRLLKRAKELGDYLIVGLSTDEFNEFKKHKEAYNTYPERKYIL EAIRYVDQVIPEKDWDQKITDVQKYHIDTFVMGDDWKGKFDFLKPYCDVVYLPRTPGIST TKIKEDLK Prediction of potential genes in microbial genomes Time: Wed May 25 06:00:54 2011 Seq name: gi|256541333|gb|ACPV01000141.1| Lactobacillus crispatus 125-2-CHN cont1.141, whole genome shotgun sequence Length of sequence - 20023 bp Number of predicted genes - 18, with homology - 18 Number of transcription units - 9, operones - 5 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 25 - 726 632 ## COG2188 Transcriptional regulators - Prom 752 - 811 6.5 2 1 Op 2 . - CDS 814 - 1929 1014 ## LCRIS_00514 hypothetical protein - Prom 1957 - 2016 2.6 - Term 1998 - 2034 2.5 3 2 Tu 1 . - CDS 2040 - 3623 1424 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 3696 - 3755 9.2 - TRNA 3841 - 3912 62.4 # Gln TTG 0 0 - TRNA 3947 - 4028 63.7 # Tyr GTA 0 0 - Term 4089 - 4127 4.5 4 3 Tu 1 . - CDS 4151 - 5518 1374 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 5566 - 5625 6.9 - Term 5655 - 5691 5.0 5 4 Op 1 . - CDS 5725 - 5946 247 ## gi|256844694|ref|ZP_05550179.1| conserved hypothetical protein 6 4 Op 2 . - CDS 5970 - 6290 297 ## LJ1687 hypothetical protein - Prom 6315 - 6374 3.9 - Term 6340 - 6375 4.2 7 5 Tu 1 . - CDS 6399 - 7874 1999 ## LCRIS_00508 S-layer protein - Prom 8106 - 8165 6.3 8 6 Tu 1 . - CDS 8202 - 9035 734 ## COG1737 Transcriptional regulators - Prom 9160 - 9219 7.8 + Prom 9101 - 9160 9.2 9 7 Op 1 . + CDS 9188 - 9871 617 ## COG0120 Ribose 5-phosphate isomerase 10 7 Op 2 . + CDS 9858 - 10847 1106 ## COG0673 Predicted dehydrogenases and related proteins + Term 10859 - 10906 6.9 - Term 10852 - 10889 1.2 11 8 Op 1 . - CDS 10902 - 12074 1284 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 12 8 Op 2 . - CDS 12147 - 12488 180 ## gi|227876986|ref|ZP_03995079.1| hypothetical protein HMPREF0506_0080 13 8 Op 3 . - CDS 12488 - 15175 2732 ## COG0474 Cation transport ATPase - Prom 15201 - 15260 3.7 - TRNA 15948 - 16019 62.4 # Gln TTG 0 0 14 9 Op 1 . - CDS 16207 - 16893 442 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Term 16899 - 16930 2.5 15 9 Op 2 . - CDS 16940 - 17599 773 ## COG1359 Uncharacterized conserved protein - Term 17609 - 17656 -1.0 16 9 Op 3 1/0.000 - CDS 17668 - 18258 333 ## COG0406 Fructose-2,6-bisphosphatase 17 9 Op 4 . - CDS 18265 - 18840 475 ## COG0406 Fructose-2,6-bisphosphatase - Term 18870 - 18900 1.0 18 9 Op 5 . - CDS 18917 - 19981 921 ## LCRIS_00492 surface exclusion protein Predicted protein(s) >gi|256541333|gb|ACPV01000141.1| GENE 1 25 - 726 632 233 aa, chain - ## HITS:1 COG:SP1446 KEGG:ns NR:ns ## COG: SP1446 COG2188 # Protein_GI_number: 15901296 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 4 229 6 230 235 223 50.0 2e-58 MEEPMYIKIHNQIKRDIENHVYQVGDRIPAERQLAVKFGVSRMTLRQAIKTLEDEGILER RLGSGTYVASQKVQEKMSGIMSFTEITKANGQVPSSKLISYQIGNPSLSEKERLALKDNE NVLRMERIRYADKTPICYEVVTVPYYLVKNFSKEDVSTHLYKTLEKRGGFAIGRVTEHIS ASIANEQDARLLKAKKGEPLITRRQVTELADGQPFEYTRARYVAERFEFTFSK >gi|256541333|gb|ACPV01000141.1| GENE 2 814 - 1929 1014 371 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00514 NR:ns ## KEGG: LCRIS_00514 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 23 371 1 349 349 664 99.0 0 MARIIRVGGSSSSVSWHEVLKDLHADDVLMLGPGYYYLPQGITLTDITIKGTGSLPEDTT IYGYISVSEDSRYVTLENLCIDTTTEHNSLSVPVGVDGYLTLRNCFIKGTGTDTAAIAVN GKITLELYSTKIVNGSVSMYDHANFRLEMNDSEIDYFSDKYCALAIEGEGTAIVNNSKIH GSINTFAKTNAELDLNNSEVDYVLLHGQTWMNMLNSKVKSASDSCFYLSDDCWSNIMNST FLGGVYIDKKTRTIIQNSTINRMIVVDEAKVTMNNAVILAHADFQDQAKCDATRVTFTGN MNYEYFLALSGEANMKGHNIVLNPNQANLAVKDEAKFSASVVANDNEQVEVEYNKRPNVY ILGVKWTAKKK >gi|256541333|gb|ACPV01000141.1| GENE 3 2040 - 3623 1424 527 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 14 516 37 547 559 361 40.0 2e-99 MTAAAALVLAACSNNDSNAAPTKTMNTSVTNEISTLDSSKYGDTTSSEVLQNSMEGLYRF NKKNQPELAGATKVERSKDQKVYTFTLRNNAKWSNGDPVTALDYVTAWRRTVDPKNSSLD ADSYAIIKNGEAISQGKAPVNSLGIKALGKYKVQVTLANPIPYLPQILEGAQFYPQNSKL VKKLGSKYGTSSKNLVYNGPFTVSGWTGSNLKWTYKKNPTYWNKKIVDLNKVNVQVVQTP STGVNLFRSGELDYTTLTSDFVKQYQNNSSYHTKVTPTNGYLSFNLKRKSTGNVHIRRAI SRAINKQQLVKTVLHQGKVSNGIVAANFITDQATGNDYRKDAGDLVTYNAKEAKKEWQLG LKQLGKKKLTLELLTSDIDDAKRVGEFIQSNLMKNLPGLTLRVRSIPLKSRLSNTTNHNY DFVYGTWQPSYEDPIDFLTVGGLFNLAPDYHNANFWKQIDLARSTYATDPQKRLNALVNA EKQLIQKDAFAAPLFQQGTSYLLNKRVKGFQLSPYGNVAYYWNVKMK >gi|256541333|gb|ACPV01000141.1| GENE 4 4151 - 5518 1374 455 aa, chain - ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 5 450 2 444 454 254 35.0 2e-67 MSKKKIIIVGASHGGQEAAYEILDRYDDVDVTIYEAGDFVSFMSCGMKLFLEGKTTGQDN VRNFTPEDLAERGGKVVNNTAVTALDPAKKTVTVKNVKDGTTKEVSYDKLIISSGVNPAS LPLPGADLKNIMLMRGYDCATEINAAAQDEAIKNVAVIGAGNGIAAAEVFAKAGKNVTLI DGGQKPLENYLNDTYTSLFEKELTDHGVNLAMNTKVTGFVGNGKVNAVQTDKGDITADCV IITVGIKPNTDWLKNTIDLYDNGYIKVDNYFRTNVKDVYAIGDAIFPFSIPANRRVPMPS AIAARHEAQYVVEHLFEDKPERVFKGLVGAQLLEAFDLHAVTTGLSEKNAKRAGINAKET VLKSYLRPDYIPEKDNPTCYIAVVYNEDSHQILGGSVLSSYDISGQANVLSLAIRNKLTL EDLAEADFFFSPTYDKQWSLVNQVAQKALGLKLTV >gi|256541333|gb|ACPV01000141.1| GENE 5 5725 - 5946 247 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256844694|ref|ZP_05550179.1| ## NR: gi|256844694|ref|ZP_05550179.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] # 1 73 10 82 82 105 100.0 7e-22 MNKPEYEMNEVAKRAAEKAIKEAKIVDAKKFIGYAKNHGTNLENTIQETMDMYDEVLNRN EITKLVNEIYQQN >gi|256541333|gb|ACPV01000141.1| GENE 6 5970 - 6290 297 106 aa, chain - ## HITS:1 COG:no KEGG:LJ1687 NR:ns ## KEGG: LJ1687 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 10 96 11 97 283 71 44.0 9e-12 MRRRINRYPRITNDLVFGHVMSNKKNCLELLRRMFPELKLTKVNVITQYDGNIGLESKNI RLDIWAQDDQSRVYDIEMQTTRKNDLEKRMMYYAGISACRRISTTT >gi|256541333|gb|ACPV01000141.1| GENE 7 6399 - 7874 1999 491 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00508 NR:ns ## KEGG: LCRIS_00508 # Name: slpX # Def: S-layer protein # Organism: L.crispatus # Pathway: not_defined # 1 491 1 491 491 670 99.0 0 MRKNTRIVSMAAAALLAVAPVAASAVPVNAAISLGTVTNTTGTTSTTTATTAKPTDRSYF TYGNQVIDAASTTDKTANVVPTTISIKAKDTVASVTKAINDLGLVFFSTNNASGEKVNLK DSEVAAILKNAGVTLDKDNKNITAVPTSDFNLTLTGTGSTSTQTATVQIPVVVSGSSSTT DTTQNPVINWSLNGQSKGSVNGQIFQVAVGSQFNPTNFVNSNGEPVIISAVQNSNNNTAA SLEATSNPVNTSEAGRYYNVTLTATGLTGKKTTATYTVLITSSHKQALYANGASSIATYH IYGINVRPASTTFKDGDTVYVADQTRTLNNVSYSQVSTKSKSDANSSNIWVKTSSLVKPA GDTNTKTLPVMVDSRAYDKNGNYLGHMYYAYNDIEIVPTVVTINGKTYYKVANKDEYVRV TNITGNQRTLKHNAYIYWSSYRRTPGTGKMYRGQTVTTYGGQMRFKNGKKYYRIEGCRNN NKRYIKAVNFY >gi|256541333|gb|ACPV01000141.1| GENE 8 8202 - 9035 734 277 aa, chain - ## HITS:1 COG:NMA1605 KEGG:ns NR:ns ## COG: NMA1605 COG1737 # Protein_GI_number: 15794500 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Neisseria meningitidis Z2491 # 4 271 1 272 282 102 28.0 6e-22 MTKIIDTIYSKLATMSASDQKIAQVILKQPEQVVNYTISKLATEAEVSDASVTRFCHNLD LTGFHDLKIQLAQNATESVSLQNMSRDDASANLELIEKNKVAEIKATLENVTEAKLDQVL HFLTESRIVQVSAEGDTYPVAADAVYKFNQIGLLAIDSGGTIETAIAQTMNLSKKDCLLV ISNSGEAAGIIKQIKVAKQKGMPVIAITNRDDSPIALLADVHLKTAVRQTVMQSQYYFSR VASMTMIEALYLLLIAGDAGRVEHVKEHEAIISNQKI >gi|256541333|gb|ACPV01000141.1| GENE 9 9188 - 9871 617 227 aa, chain + ## HITS:1 COG:CAC1431 KEGG:ns NR:ns ## COG: CAC1431 COG0120 # Protein_GI_number: 15894710 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Clostridium acetobutylicum # 10 215 14 222 227 112 33.0 4e-25 MKINSISDLALSKIKPKMTISLGGGSNVFKLAQAIAQHNLDITLYSPSELTRFRCKELGL ELLPSTAATKIDIAFDGCDSIDKNFNVLKSLGGIHLFKKQAAQIAKQFILLLPSQRIQPI LNPKIPLCLEVAPPCVNQVQKYLSSLHLTSKIRQDSSVAAFARTPLGNYLIDVFNEDWHN ITELNRQLCLQNGVVSSSLFENLTTSLITEKDGEIIELKRGNNHENI >gi|256541333|gb|ACPV01000141.1| GENE 10 9858 - 10847 1106 329 aa, chain + ## HITS:1 COG:CAC3400 KEGG:ns NR:ns ## COG: CAC3400 COG0673 # Protein_GI_number: 15896641 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Clostridium acetobutylicum # 1 326 1 322 322 331 50.0 1e-90 MKTFNWGIIGTGWIAHDMADALNKVNGEIYAAANPNEEALHAFVQEKHVQHAFTNPDEMI NDPNVDIIYIATPHTFHYDYIKKALNAGKHVFCEKAITVNARQFDEVAQLAKKKHLILME GFTLYHMPIYQKMQDMIKAGKFGEIKMIQINFGSLKDYDPQNRFFNKELAGGALLDIGGY ATAFAISFMDEYPESINTTVKFFETGVDEESGIILKNSKGQMAVMSLSMRAKQPKRGLVS GTKGYFEINQYPRGTEADITYTQSAHEESYDKVTAGDADQALEYEVTDFQKYIEQGHDEG ELEKSRMIAHILTSIRTAWGMTYPFDNEE >gi|256541333|gb|ACPV01000141.1| GENE 11 10902 - 12074 1284 390 aa, chain - ## HITS:1 COG:SP0035 KEGG:ns NR:ns ## COG: SP0035 COG0436 # Protein_GI_number: 15899981 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 387 1 388 389 360 48.0 4e-99 MVDLTKHMKKGLVEQKPGQILAFAAYTNKISDIVKFTIGEPDFNTPEHIKKAAEASIANN HSHYAPSNGTPGLRKAAADFLAEKYGQKYDPSEILITNGVTESIYDFLTAALNPGDVVLV PTPIFPLYIGDALSMGATVEQIDTSDDDFKLTPDKLQAALDKYGDRVKALVMNYPTNPTG VMYSQDELDALADVVRDKPVFVLCDEIYSELNYDQPHASMEKTLHDQVVLMNGVSKAWAM TGYRIGVVAAPKPILDQLAKIHQAITTTEPTPMQDAAEEALGNGMNDAEPMKKEFQKRRD VLYEGLTKLGFECVKPKGAFYIFAKIPAGLEQDDTKFIYDLAEKRHVAVIAGSFFAKGGA GYIRLSYATSMDQIKEGLKRLEKYVAENKQ >gi|256541333|gb|ACPV01000141.1| GENE 12 12147 - 12488 180 113 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227876986|ref|ZP_03995079.1| ## NR: gi|227876986|ref|ZP_03995079.1| hypothetical protein HMPREF0506_0080 [Lactobacillus crispatus JV-V01] # 1 113 1 113 113 129 100.0 5e-29 MKDYKKILNQLLLICGIISYIFLLLEALPIFQFFYIKSYPVDFTILITDIVLTVALPILS YFQRFRILTIVLAIVLIILLLIKYQAMYPTVTAIYSIYALLIIGFNVHFRYQN >gi|256541333|gb|ACPV01000141.1| GENE 13 12488 - 15175 2732 895 aa, chain - ## HITS:1 COG:L85514 KEGG:ns NR:ns ## COG: L85514 COG0474 # Protein_GI_number: 15673239 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 9 890 21 905 910 764 45.0 0 MAKNKLLINKKTADTEFVKQIARQTPEEALKTLHSSLDGLSSAEAKERLEKNGLNEVATK KHNTKLHFFIESFFTPFTMVLLLLATVSLFTDYVFVPADQKDLSTVIIMIAMIIISGLTS FIQNVKTNDAVEALLNMVSVTTNIRRNQKDEEISTKQVVVGDIINIHAGDMVPADIRLLK TKDLFCSSSSLNGESTPVEKIATKRPDQKDMDQYLDYPDVIYQGTTIVSGSGVGVVLATG EQTVFGRLAKDISNNDVKETNFDVGIKNISKLLLTMTAIIAPLVLVINGLTKGNWLNALL FAIATAVGLTPEMLPVIVTSNLVKGSLEMSKHGTIVKKMNSIQNFGAADVLCTDKTGTLT QNKVVLERHYNLDMKENPQVLRLAYLNSYFQTGMHDLMDQAIIDAASDELDVNEIKHDYT KVDEIPFDFKRRRMSVVVKRHGDGRILVTKGAAEEMLACCNRVQVGSHINDLTDDYKEKV LKHIEDLNKDGLRVVLLAYKNNPAQAGEFNVSDEKDLILTGFLAFLDPPKDDVKDVLKKL KQDDITVKILTGDNAAVTKSVASRVGLNTKYIYSEKDFAGKSDDEVKKMVEECSLFVKLS PESKARIIQILKENGHTVAYMGDGINDTPAMKKADVAISVDTAVDIAKKSADIILLHKSL RTLEHGVRIGRQIFANTMKYIKITLSSNFGNILSILVASSFLPFLPMLPMQLLILDLIYG TSCLSLPFDRVGEKYLEVPRKWETKKLPKFMFFFGPTSSIFDIITFALLYFWICPSTVGT SYVAATPGQKAVFMAIFWSGWFIESLWTQEMVIQALRDPAIPFLQQHSSGVVMLATIGAG LIGTAMPYIPNLAKVMKFGPIPEYYVLVVLVLLTLYIALTTLVKHWYMKKEKFLI >gi|256541333|gb|ACPV01000141.1| GENE 14 16207 - 16893 442 228 aa, chain - ## HITS:1 COG:lin1330 KEGG:ns NR:ns ## COG: lin1330 COG0584 # Protein_GI_number: 16800398 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Listeria innocua # 4 226 2 232 235 117 33.0 1e-26 MTQTIIFAHRGLPVKFAENSLQGFKYAATHGAEGVEFDVHLTKDKVPVVMHDETLDRTTN GTGYIKDYTLSEIRRFRLANGEPVPMLSELFEILQGQDLYVNLEFKTNKIHDEGIEAIVL ALAQEYHFVHPIIFSSFNYQTLKNCQRIDPHQQYCFLNKWPVPFPEQFAAKNHFAAIHPH WYLPSKVTQRIWTVDKVSIAKRYFKLGVAGIFTNDFELMNKVKKSQKL >gi|256541333|gb|ACPV01000141.1| GENE 15 16940 - 17599 773 219 aa, chain - ## HITS:1 COG:FN1347 KEGG:ns NR:ns ## COG: FN1347 COG1359 # Protein_GI_number: 19704682 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 1 197 1 193 218 63 24.0 4e-10 MDETPIFRITKLNIKENDRGEYIREVENNMHNSIPAEEGTLLIGSAHDDAHGEDNYEIEL FRNSLAEDLHIAAAHADDFAETIDKISTDKEVIELKPEVITTKAHDALNDNADHFVMRLV KVEVKPEDAEKFAHEVKKEMTTSMAAEPGMEIMMSGVNKKNENEWYFVEVYFDDKAYDAH IKSAQYLEYVENTDGMVVRRDVKNLVRDTLATQGAIVLD >gi|256541333|gb|ACPV01000141.1| GENE 16 17668 - 18258 333 196 aa, chain - ## HITS:1 COG:lin1208 KEGG:ns NR:ns ## COG: lin1208 COG0406 # Protein_GI_number: 16800277 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 1 173 1 177 199 109 39.0 3e-24 MAINLYLVRHGQTWFNKGHRMQGSCDSALTPLGIKQAEAVRDYFQDQGINFARAYCSPQE RASDTLEIIAGPEMEYVRLKELKEKSYGAFEARNVLLWPLHRLGKFRVEDNHEVVERMER GINLIMRDAQDGDNILVVGHGDSLSQYINEKTNHREFLGLPNCSFVQLTSNEGSTLEYVR TEWPAKAVKIDQITGE >gi|256541333|gb|ACPV01000141.1| GENE 17 18265 - 18840 475 191 aa, chain - ## HITS:1 COG:lin1208 KEGG:ns NR:ns ## COG: lin1208 COG0406 # Protein_GI_number: 16800277 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 1 184 1 185 199 127 40.0 1e-29 MTKTLYLVRHGQTYFNYYHKVQGRCDSPLNERGIRQVEMARDYFKKQGIHFDKAFSSTQE RACDTLEIITDHQMPYTRLKDLREKCYGIFEGRDEFLLPWNYNNPNVDPTMEKDEDVVAR MHRAVVEILSGLEDGQTALVVGHGDILAKFVRDATENKNFGGFGNASIVKLTVDGKKIHF DSYVWPAEGLK >gi|256541333|gb|ACPV01000141.1| GENE 18 18917 - 19981 921 354 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00492 NR:ns ## KEGG: LCRIS_00492 # Name: not_defined # Def: surface exclusion protein # Organism: L.crispatus # Pathway: not_defined # 1 354 1 354 354 557 84.0 1e-157 MKQKLIVTLLTSVCLMGTASVIHETTPQTVQAAVKGKVQVKGTKKVRLYTNKGKKSKYYA VAKREYSYSAKKYLKLGKKKYLAYKIGNNSQWLLAKNAKLVKKTAATQNYVTATMKMPSG YTKASLLQAYKGKPSASFIQACMKGMEQNDFSRVSSGESKADQKMINLADLSASEQKELA EFSLCLINSARSQLGLKPWVYSSGVESLANSIAQEYEQNGKSIKDGDHYVAGIVRACKKH GLELNDNYVEDMAGFSTNKKIMSMAEMKRNIYFGLKQMIFGFAGAGENQRNDKSLYREWE HAGDLFNTQGSRHDGDYNYYGFSISKTGNIYSMHFISVPSFVVNSSEYNKNFKI Prediction of potential genes in microbial genomes Time: Wed May 25 06:01:30 2011 Seq name: gi|256541332|gb|ACPV01000142.1| Lactobacillus crispatus 125-2-CHN cont1.142, whole genome shotgun sequence Length of sequence - 27520 bp Number of predicted genes - 28, with homology - 28 Number of transcription units - 17, operones - 5 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 32 - 86 9.1 1 1 Tu 1 . - CDS 127 - 798 889 ## LCRIS_00491 aggregation promoting factor - Prom 989 - 1048 8.2 - Term 1090 - 1134 6.1 2 2 Op 1 . - CDS 1166 - 1411 295 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 3 2 Op 2 . - CDS 1341 - 1982 651 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Prom 2189 - 2248 8.4 - Term 2223 - 2263 -0.7 4 3 Tu 1 . - CDS 2367 - 3239 786 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - Prom 3341 - 3400 6.4 + Prom 3221 - 3280 6.6 5 4 Tu 1 . + CDS 3381 - 3581 249 ## LCRIS_00485 hypothetical protein - Term 3802 - 3838 5.1 6 5 Tu 1 . - CDS 3862 - 4425 393 ## gi|256844712|ref|ZP_05550197.1| predicted protein - Prom 4508 - 4567 7.2 - Term 4902 - 4939 2.1 7 6 Op 1 . - CDS 5045 - 5818 867 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 8 6 Op 2 . - CDS 5826 - 6095 172 ## gi|256844714|ref|ZP_05550199.1| conserved hypothetical protein 9 6 Op 3 . - CDS 6117 - 7496 1630 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 10 6 Op 4 . - CDS 7527 - 7847 473 ## LC705_00427 PTS system galactitol-specific transporter subunit IIB 11 6 Op 5 . - CDS 7898 - 8356 677 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) - Prom 8399 - 8458 16.7 + Prom 8342 - 8401 6.4 12 7 Op 1 10/0.000 + CDS 8542 - 9294 584 ## COG1349 Transcriptional regulators of sugar metabolism 13 7 Op 2 . + CDS 9297 - 10250 672 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 14 7 Op 3 . + CDS 10264 - 11085 729 ## COG0561 Predicted hydrolases of the HAD superfamily + Prom 11525 - 11584 5.9 15 8 Tu 1 . + CDS 11622 - 11912 192 ## gi|256844721|ref|ZP_05550206.1| hypothetical protein HMPREF5045_02018 + Term 12024 - 12062 -0.7 - Term 11918 - 11952 3.1 16 9 Tu 1 . - CDS 12071 - 13429 637 ## lhv_0676 transposase - Prom 13504 - 13563 3.2 - Term 13530 - 13577 0.1 17 10 Tu 1 . - CDS 13636 - 13863 300 ## LCRIS_00484 hypothetical protein - Prom 14022 - 14081 5.4 18 11 Tu 1 . + CDS 13960 - 14355 453 ## LCRIS_00483 hypothetical protein + Term 14369 - 14416 7.5 - Term 14361 - 14400 6.2 19 12 Tu 1 . - CDS 14407 - 15009 545 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 15035 - 15094 7.7 + Prom 14994 - 15053 4.3 20 13 Tu 1 . + CDS 15150 - 15557 435 ## COG3223 Predicted membrane protein + Term 15563 - 15612 8.2 - TRNA 15775 - 15850 79.9 # Thr CGT 0 0 - Term 15712 - 15759 2.1 21 14 Op 1 . - CDS 15932 - 16690 846 ## COG0778 Nitroreductase 22 14 Op 2 . - CDS 16742 - 17992 1245 ## COG0004 Ammonia permease - Prom 18111 - 18170 10.8 - Term 18155 - 18195 5.0 23 15 Op 1 . - CDS 18217 - 18594 510 ## LBA0471 hypothetical protein 24 15 Op 2 . - CDS 18626 - 20857 2007 ## COG1201 Lhr-like helicases 25 15 Op 3 . - CDS 20869 - 22197 1233 ## LCRIS_00477 biotin carboxylase 26 15 Op 4 . - CDS 22202 - 24052 1457 ## LCRIS_00476 hypothetical protein - Prom 24116 - 24175 6.0 + Prom 24088 - 24147 7.2 27 16 Tu 1 . + CDS 24236 - 25894 2059 ## LCRIS_00475 phosphoenolpyruvate carboxykinase (ATP) + Term 25949 - 25997 9.5 - Term 25941 - 25980 4.1 28 17 Tu 1 . - CDS 25985 - 27388 775 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 27443 - 27502 5.4 Predicted protein(s) >gi|256541332|gb|ACPV01000142.1| GENE 1 127 - 798 889 223 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00491 NR:ns ## KEGG: LCRIS_00491 # Name: not_defined # Def: aggregation promoting factor # Organism: L.crispatus # Pathway: not_defined # 1 223 1 223 223 299 99.0 6e-80 MKIKSILVKSIAVTALSVTGLVAANNNTNTAQAAIVENDTDVVTVKNVSDNAITVYNSYK NPEATGQTLASNTSWKVIKTAYDAKGHKWYDLGKNQWVRAKYVTRGYHTQAAVTQAPVQH QTQTENTNSAATTTVANNTNTQTTTSTVSGSEASAKEWIAGRESGGSYGASNGQYVGKYQ LSASYLNGDYSAANQERVADNYVKGRYGSWTAAKAFWQANGWY >gi|256541332|gb|ACPV01000142.1| GENE 2 1166 - 1411 295 81 aa, chain - ## HITS:1 COG:SP0474 KEGG:ns NR:ns ## COG: SP0474 COG1455 # Protein_GI_number: 15900389 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 4 80 359 435 440 67 50.0 4e-12 MIAPMVNAITTYFAMNLGLVLLCNGTVIPWTMPPIISVFLATGSIAGSILQVINIILDIL IYLPFIAALNKRQLIEEDKAE >gi|256541332|gb|ACPV01000142.1| GENE 3 1341 - 1982 651 213 aa, chain - ## HITS:1 COG:BS_ywbA KEGG:ns NR:ns ## COG: BS_ywbA COG1455 # Protein_GI_number: 16080890 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 14 190 8 189 444 134 44.0 1e-31 MANSKSSGGLNAFVNKHIMPVAAKIGSFKPLIAVRDGIAMAIPLIIVGSLFMIINSFPVA GWSDWLSKTAVHGIILAQILAKITNGSFGIMVLIAAFGIAWSYANQYKTDGVSAGIVSAA VFFILTPSIMSGDKVPVEGFPYTYLGSRGLFVAIIFGLLSAWILQWFINHNIQIKMPATV PPAVAKSFSAYDCANGKCDYHLFCNEPRLSSIM >gi|256541332|gb|ACPV01000142.1| GENE 4 2367 - 3239 786 290 aa, chain - ## HITS:1 COG:TM0742 KEGG:ns NR:ns ## COG: TM0742 COG0639 # Protein_GI_number: 15643505 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Thermotoga maritima # 21 208 5 166 209 86 33.0 6e-17 MKKIINRTLLDDRVKENYIFISDIHGNLETLDLIKQATADFPEAQLVAGGDYVDGREHVK EVLDYLIEQKSEGAIVLLGNHEQMLLNFAEKQEHQDGIWFYNGGGKSLVSLFGSTVLPDE LRDSEYYRFLKGGPIMYETPHLIFVHAGVRPDEQYNDPETYSEIEYGLKFDYDFYRIWAR DKYWYSDFLLKMMAHNKTGKTIVTGHTPTAALEGKYDDGRQMRRLSIDDCIVRTVQYPGE PARIFTDGGSHSDPLIYPHNDGNVVVLDGMGKIVRVYNWKHPHGTRFENQ >gi|256541332|gb|ACPV01000142.1| GENE 5 3381 - 3581 249 66 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00485 NR:ns ## KEGG: LCRIS_00485 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 66 1 66 66 107 96.0 1e-22 MFNEENAIDAKNLHVDSFKYQSTEDIPSDAYSSWEEKHPNARVFKPEFRNIGESNEWQEM IIIYTE >gi|256541332|gb|ACPV01000142.1| GENE 6 3862 - 4425 393 187 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256844712|ref|ZP_05550197.1| ## NR: gi|256844712|ref|ZP_05550197.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 187 1 187 187 319 100.0 5e-86 MHRLMAKIISSDEDVETFYKLITNLIIQQSYKQLKNDSYIEPEVIVNMIHNNIASHNDFP KSAYDYEGLNKIEINNDQLSATAESLIGYRVRDEANKLENKFNELTYSGKNGNYMVFLNA NDQIFELRDNEERTLLLVFTYFIDSCKNYQVNPYRMLRAIKKAIFSSKKRLIAKVENKEY NVIKLRY >gi|256541332|gb|ACPV01000142.1| GENE 7 5045 - 5818 867 257 aa, chain - ## HITS:1 COG:lin2198 KEGG:ns NR:ns ## COG: lin2198 COG0235 # Protein_GI_number: 16801263 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Listeria innocua # 10 222 3 201 216 160 39.0 2e-39 MIVPKGRIPFEFEREDLAKVVRLVMERRDTNVVGGNISIRVKDETGKDYLVMTPTMMSEA YLGHLNADQILVIDPETREIVSGTGKLTREINMHEAIYAASPDIKCVFHAHADQAMFWAT TGLNMPNVTEATQKLKEIKTCKWHPMCTEDLAQYMKGEVQKRLDQGQIRNAFLLNSHGVL FTNGGKDMDALTALHGSLADVDTVEWNAKIAYKQTVLQMNGMLDGYYGEDTKIGTWADVK AGKAIYNTHMLENKNGD >gi|256541332|gb|ACPV01000142.1| GENE 8 5826 - 6095 172 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256844714|ref|ZP_05550199.1| ## NR: gi|256844714|ref|ZP_05550199.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] # 1 89 1 89 89 162 100.0 6e-39 MHKVFNAKSFWTFVCFVAFFIFTSSLITQAWWLNIFTMILGLAFKYYGDPICFPERTKIR KEREEKMQTYLDKRQEKNISYLRNKRNRK >gi|256541332|gb|ACPV01000142.1| GENE 9 6117 - 7496 1630 459 aa, chain - ## HITS:1 COG:lin2200 KEGG:ns NR:ns ## COG: lin2200 COG3775 # Protein_GI_number: 16801265 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Listeria innocua # 6 438 7 439 449 337 43.0 4e-92 MNWNDIVQAILGVGSQVLIPILIIILGLIFGMKPSKAILSGLYLATGFIGMSMAINQLTT AVSPAAKALATHTSINLPAVDFGWPGAAAITWAWPMAFVFFAVEIVINLIMLLANLTKTL NADMWNVWGIALTAYMVYSISGSMPWAFVAAAIQIIISLKLGDMWSEEIKTDFGLVGVTT THIEAFTATIMFPVNWLMNYIPVFNKKWDARDLKKKIGILSEPVVMGAIIGLILALAGRY SIGNALNLAVTVGAVMAIFPPMAKFFMDALTPFGTTMSNFMKKHVKGREFVIGLDWPILG QSTELWVTMVLMIPISIVYAAILPGNKVLPIAGVINYCIGVGGLLLTGGNLLRMIVLGII YEPLFLYGATYFSGVFTKLATSTGAAKVPKGSEVTWSSIEAPDLRFLMAQAGRLNWLAII GLIVLLALFVLLYQYMKKNPLPGKRYEALEKKTAAAEKK >gi|256541332|gb|ACPV01000142.1| GENE 10 7527 - 7847 473 106 aa, chain - ## HITS:1 COG:no KEGG:LC705_00427 NR:ns ## KEGG: LC705_00427 # Name: pts # Def: PTS system galactitol-specific transporter subunit IIB # Organism: L.rhamnosus_Lc705 # Pathway: Galactose metabolism [PATH:lrl00052]; Phosphotransferase system (PTS) [PATH:lrl02060] # 1 103 1 102 109 124 60.0 1e-27 MKTILVCCGSGVATSPQVSQKINEYLADQGLDSQAKAIPKPIETAESTVQNDPSVICYIG IAAPDDALKDVLDENHVNHDLTGLPWLTGMGQDEANEKIKEMVENS >gi|256541332|gb|ACPV01000142.1| GENE 11 7898 - 8356 677 152 aa, chain - ## HITS:1 COG:lin2202 KEGG:ns NR:ns ## COG: lin2202 COG1762 # Protein_GI_number: 16801267 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 2 152 4 155 155 80 29.0 2e-15 MQNMFNTDLIDLSASVSDEQELFDLVGTRVIEKGFANLGYISGLEKRELSYPTGLKFPEI PMALPHVDPKYIKKPFIYVIRNDKPIDVKQMGDSADMQSSNFLFLGLKDGAKQPKLLAEI MAAFQNKQFVSAFQNADDKEAMYNLLTNKFAE >gi|256541332|gb|ACPV01000142.1| GENE 12 8542 - 9294 584 250 aa, chain + ## HITS:1 COG:CAC2966 KEGG:ns NR:ns ## COG: CAC2966 COG1349 # Protein_GI_number: 15896219 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Clostridium acetobutylicum # 1 249 1 250 254 140 32.0 3e-33 MTIKKQERQNQIVLLLNRAGFMTSKALAKQIGVTTMTIRRDISELSQRNKLIKIYGGAKP LNNSMTVEFSTSQKMKINVDLKQEIGQKLADIIEDGSTVYLGAGTTLLYSLPFLIKKKLT FVTNSFVAFSKLATSDCRVLSTGGELHKNTGEFLGQIAERTFDGLNLDYALCSTNGIKDN AVTTSSEDEGRIQNVAINHAAQALIVADHTKLGRSDMITFRNLNTFDGLVTDNDISADLK KEYSTYTKVW >gi|256541332|gb|ACPV01000142.1| GENE 13 9297 - 10250 672 317 aa, chain + ## HITS:1 COG:SP1191 KEGG:ns NR:ns ## COG: SP1191 COG1105 # Protein_GI_number: 15901056 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Streptococcus pneumoniae TIGR4 # 1 307 1 300 309 167 33.0 2e-41 MIITVTVNPSVDRLYKIDRLIPGSLNRVEAKKHMVGGKGFNAGRVASLLGSQTFVFGFIG GENGKFIEQESHHDKYNTWFIDTGVETRNCLQIIDNNNNKTEINESGLPIEAKYYAQLKN SLKGILKSKDVKAVSLNGSLPQGCDYHYYLDLISLIREIKPSCAILLDTSGNILNQILDT NIKPDIIKPNEHEIADYLGKEVTTDPMQLMNDIESNPNLRRVYIIFVSLGSKGCMIKHGE SYYYAVQKKVKAVNTEGSGDSMVGGILTAIDQDAKNDKLIRYACAAGTANAMNLKTGYLD LVTFESLLPNINISRLN >gi|256541332|gb|ACPV01000142.1| GENE 14 10264 - 11085 729 273 aa, chain + ## HITS:1 COG:CAC0629 KEGG:ns NR:ns ## COG: CAC0629 COG0561 # Protein_GI_number: 15893917 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Clostridium acetobutylicum # 1 273 1 268 268 175 37.0 7e-44 MIKLIAIDLDGTLLNDHGEILQNSIKAIKEAKNYGIKIVLCTGRPLVSVTPFLEQLQLTN FNDQYVITFNGSIIETTAGKVIKQQTFDFQTFVDFELWADKIALYTQLENQEALYTINQN IPIDAAHESWKNKLPIHVTSLHDLIAMPQKPVMLKIMAVASKEKLDEIQHKIPNDLLDKL SPIRSEPMYLDFAAPNVDKGWALKKLTQYLHLNRQEVMAIGNADNDVPMVKYAGVGVAME KSTPRLLQVADYITGSNNTTGIADIINKMILTK >gi|256541332|gb|ACPV01000142.1| GENE 15 11622 - 11912 192 96 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256844721|ref|ZP_05550206.1| ## NR: gi|256844721|ref|ZP_05550206.1| hypothetical protein HMPREF5045_02018 [Lactobacillus crispatus 125-2-CHN] # 1 96 1 96 96 162 100.0 8e-39 MQLTFYHYESFNPDEKERSLTLSYPIVVLDGFTLESTKAAQKIFLKYVEQNQADFEDINF IFQDHNIKLKVITKLPLELNEYLSPSEMKEASEIAE >gi|256541332|gb|ACPV01000142.1| GENE 16 12071 - 13429 637 452 aa, chain - ## HITS:1 COG:no KEGG:lhv_0676 NR:ns ## KEGG: lhv_0676 # Name: not_defined # Def: transposase # Organism: L.helveticus # Pathway: not_defined # 260 452 1 193 194 220 56.0 9e-56 MKALHQNILERFDQIINDTAAHIHDFIDDPHAFTRKRSLDAFTVLKMTINMQGNCLSKEI DDALDDNSQNGGDIVSVSAYVQQKAKLSPKCFEHIFHVFNDKFPAKTKLNDKYFVFAFDG TDFDQLWNPKSHNKVSAKNDQSYCQIHNNAMYNLLDNTYQDCILQPKAQMDERGAALQML KRLNCSHPYIVLMDRGYESFNLIENCNRLSNCYYVIRAKTGRIKEISALPDKTCDTDITC RVTISNHYYTMNHKKEKIHLVRHVKHHYKTSFSKNTRDQRWDFGNFCDIKFRACKIKVND PDTGKEEWEVLLTNLDRQEFPLEQMKELYHLRWGIESSFRKLKYDLGSIQFHSKQDRFVE MESYAHMAMFNVVSLINNQAYVPQHDCKYQYMINFKMSCSIVHERYPVSSSNENFIGILI RISKYVVPIRPGRKDKRNLKAKSAIYYMYRVA >gi|256541332|gb|ACPV01000142.1| GENE 17 13636 - 13863 300 75 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00484 NR:ns ## KEGG: LCRIS_00484 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 71 1 71 76 82 100.0 4e-15 MTDKSHDPDNFDWLDSIINEETDKRVKNEGPQKKDQTSDDSDNHWFDSIIDAAVEKRTKE NERILHKLKEKRKSK >gi|256541332|gb|ACPV01000142.1| GENE 18 13960 - 14355 453 131 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00483 NR:ns ## KEGG: LCRIS_00483 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 131 1 131 131 249 99.0 2e-65 MKITFTDKALDYLKRREILNKILILIADDGGGKYSIKGGGCAIGSHFSIIYVDKVDPDYP IKFENNQGINIYTSKYDTTMMGPNLVVDYANASLNLKSDEGLLDGGVDIGNGAELIKAQK NVKMTGVKWRC >gi|256541332|gb|ACPV01000142.1| GENE 19 14407 - 15009 545 200 aa, chain - ## HITS:1 COG:L120883 KEGG:ns NR:ns ## COG: L120883 COG0110 # Protein_GI_number: 15673269 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Lactococcus lactis # 12 189 12 191 203 172 51.0 4e-43 MSLRTKFNYMATGRPYNDADPRLGTLRDLATLKTNNINNENDHAKKEILIKELFGSTGEH PFVNPNFRCEFGQNIHVGDNFYANYDCTILDGAPVYIGNNVLFGPKVGLYTSNHLFDPAE RKAGGCVVHSIGIGDNVWLGAGVSVTPDTIIGRNSIIGAGSVVVNDIPDNVIAAGNPCKV IRKITAADRTGFDPNSGQFL >gi|256541332|gb|ACPV01000142.1| GENE 20 15150 - 15557 435 135 aa, chain + ## HITS:1 COG:YPO3717 KEGG:ns NR:ns ## COG: YPO3717 COG3223 # Protein_GI_number: 16123855 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Yersinia pestis # 5 129 4 128 135 64 34.0 5e-11 MKNFNKFTAKFARLLQNLLVVAIGLLGIILIILLFRDLIPLCQSLFSTKIKESNSEIMSE IIVFFLLFEFTAMIISALRHHGHTSINFLLGLGVTALIRSLITSHSNIWSTLATSASILV LVIAMIIFNKNLRNM >gi|256541332|gb|ACPV01000142.1| GENE 21 15932 - 16690 846 252 aa, chain - ## HITS:1 COG:lin0935 KEGG:ns NR:ns ## COG: lin0935 COG0778 # Protein_GI_number: 16800005 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Listeria innocua # 4 247 2 243 246 142 34.0 6e-34 MIHNETIDTQLNHRSIRKFKDQTLTKEQLETLYSVFGQTPTSMFMQNASLLHVTDPEEKK KIQKLCNQKYVGAEGDLFIFIVDLYRNQQIRKQLDKDDGRVHTTDIFFQAIEDTLLAFQN VANAVESMGLGYVPLGTVNDHPLDLLKTLDLPELTFPVLGMQVGMPDQKPQLKPRLPLKF TCFEGSYKKDFDVKDLKDYDDIVTTYYDLRDSNRRIDSFTKQITGKKLDLHETDRDQLPE ELHKQGLCLDWK >gi|256541332|gb|ACPV01000142.1| GENE 22 16742 - 17992 1245 416 aa, chain - ## HITS:1 COG:MA3918 KEGG:ns NR:ns ## COG: MA3918 COG0004 # Protein_GI_number: 20092714 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Methanosarcina acetivorans str.C2A # 1 407 1 399 404 283 42.0 7e-76 MINQTNTLFVFVASVLVFFMTPGLAFFYGGMVSKKNAVNTMISVFMITGVAIVLFIAFGY NLAWGKDVGGIFGLSKSVFLNGFDLKTLYSKDSGITILTYLMFQMMFSIITPALFVGAVV GRMKFKFLLAFVAIWSILIYYPMVHMVWTPDGILAKTGMLDFAGGTVVHITAGITALFLS IFVGPRIDFDPNGEVKHYNLPWVLMGTSILWIGWYGFNVGSALTVSDVATQAFLTTTVAT GTSFVVWMFLDMFIKEKTTMIGLCTGALCGLVGITPAAGYVTVAGAFAIGFICTLASYGF IHVIKPKLKLDDSLDVFGCHGVSGIVGSILTGLFATKIVNPQIENGLLYGGGLHLITAQI LGTLFTIIFVGIMTTIIVLLLKRIIPIRVSKEDELMGLDLAEHGEQADYGIEFEEK >gi|256541332|gb|ACPV01000142.1| GENE 23 18217 - 18594 510 125 aa, chain - ## HITS:1 COG:no KEGG:LBA0471 NR:ns ## KEGG: LBA0471 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 125 10 134 134 181 87.0 7e-45 MALKINQSVSKDAQARTLLKELLKVHQIHQAYNVRELTDADEQILEKAFNTTREMMPRIS AKEIKFEDKKWDSLFNFLMAEQISFARVLTNGDDNLNEYVQAKNQAQQAYALVETAINNL ENENK >gi|256541332|gb|ACPV01000142.1| GENE 24 18626 - 20857 2007 743 aa, chain - ## HITS:1 COG:alr3331 KEGG:ns NR:ns ## COG: alr3331 COG1201 # Protein_GI_number: 17230823 # Func_class: R General function prediction only # Function: Lhr-like helicases # Organism: Nostoc sp. PCC 7120 # 2 734 3 719 722 678 44.0 0 MDVFSHYAPFIQDYIYEHGWKSLRPIQVAAAEEIFNTDHNVLLSASTASGKTEAAFFPIL SEIYNEPDDSVKVLYIAPLKALINDQYDRLTDLCTDVDIPVWRWHGDVAQTQKRKLLKHP SGILQITPESLESFMINKHMDIPHLFGGLKYIVVDELHSFLRSDRGGQTFCLIERLSKLA NVNPRRIGLSATIGNLEDASKFLGAGSNRKTVTPRVQNEPQIWHLSMEHFYKTNPQASSR DFDPSQIEPKTDKAPELADPGIGYIFEHTRGKKCLVFTNSREECEAVCQELRAYCAYNHE PDRFIIHHGNLSPALRETAEAAMKDDDVYMTTCATATLELGIDIGKLESAFQIDAPFTVS GFLQRMGRTGRRGNPPEMHFVMREEHPESRAMLPELIPWPLLQGIALVQLYAEEKWVEPP EPNRLPYSLLYHQTMSTLASSGEMTPAELASRVLTLSYFHNVSQDDYRVLLKHLLKTGHI EWTEDGGLIVGLAGERVVNNFKFYAVFQENEEFSVHAGSEELGTIVKPPPVGDKIAIAGR VWVVEDVDIKRHQVYCHEVKGRIPAYFGDVPGDIQPKILQRMKKVLAEKMMYPYLMQNGK ARLTQARDTAALAGLPKNNLIKLGGNMWCLFPWTGTYAFLALERLIRIKCGKKLNIRGFN SSRPYFMYFAMDADEHDFWRILGEEADKDFDPLDLVYPNEVPGIDKYDQYLPKELLRKEF AYSILDIKEMKRCVKQMVEDNLV >gi|256541332|gb|ACPV01000142.1| GENE 25 20869 - 22197 1233 442 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00477 NR:ns ## KEGG: LCRIS_00477 # Name: not_defined # Def: biotin carboxylase # Organism: L.crispatus # Pathway: not_defined # 1 442 1 442 442 855 96.0 0 MPQKRRVPKRIAQTVLNSLKGGVVPRIGLPYITVGRKAEIEALLHDVDVIQEGGASFRFI VGRYGSGKSFLLQTIRNYVMDKNFVVVDGDLSPERRLQGSKGQGLATYRELIQNLSTKTR PEGGALTLILDRWINSVQMQVSQETGLNNDDPKFEQAVDQKIYGVISSLNELVHGFDFAK LLNMYYHAYMSGDDETKAKVVKWFRGEYSHKTEAKKKLGVDIIISDSDWYEYLKLFATFF RQAGYAGLMIMIDELVNIYKIPNAISRQYNYEKILTMYNDTLQGKAKYLGIIMCGTPQAI EDRRRGVYSYEALRSRLASGKFAQEGARDMYAPVIKLEPLTAEEMLVLTEKLAEMHANLY GYECTITDDDLAQFIKIEYARVGADTNITPREIIRDFIELLDIVWQNPDRKITDLLNSDQ FSYTKSEAVSDNAEKDYTEFKI >gi|256541332|gb|ACPV01000142.1| GENE 26 22202 - 24052 1457 616 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00476 NR:ns ## KEGG: LCRIS_00476 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 11 616 1 606 606 1122 98.0 0 MNVRAKKGDKMDSNQLFKYVYAKYGLKFKPAVPGSTSVYVLMSPVDSGYFAILSRGQGQS ILDLKCGAMAALIRDLPGFTDPMKIKAADWVGAILEKVSEDSLKKALDFAFKLAMNGDEV NIAQNQYFYIAPDKVDDRYQAQAIKPSENLRKKHNNSLVPDRIRKMLEVYDYSILPSRGR AKNFYQQARMMADYDDDYPEFFAFKRFYPTYHDMNTGQLRSYFTWRSKIRQHVFEKTSTS YAFVYIYELLNNIGVDDAQDGYEKLLEFEEKYVRQFDISIDVYLQDWLKDYVLYYDLDEK IIKQRFASEIKRDHDYEVLHHPEKFTAQELAAVFAKKTTYWNSSKVINKNEKLFVQLLRY VWLELLDAKKYGIAYYSAFVGKPDIIEKPIFVGSVFYLRKQQVADHQIDAVRKYHFYQGK WQIHCDQQISRQRVNLNNFLHELDRVARTEFKLGRSIKPRFIDQAVLKAIDAGIAEYHIQ EKKAQIDQIKIDFSDLDQIRANASKTRDSLLTDEEKQLEQAEAQEEVEKQADETVKVDNE YGLDENEMFFLTALLMQQPWQTYLKQHHLMASILMDNINEKLFDEFGDVVLENNEQDQPQ VITDYVDDLKDMFLKG >gi|256541332|gb|ACPV01000142.1| GENE 27 24236 - 25894 2059 552 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00475 NR:ns ## KEGG: LCRIS_00475 # Name: pckA # Def: phosphoenolpyruvate carboxykinase (ATP) # Organism: L.crispatus # Pathway: Glycolysis / Gluconeogenesis [PATH:lcr00010]; Citrate cycle (TCA cycle) [PATH:lcr00020]; Pyruvate metabolism [PATH:lcr00620]; Metabolic pathways [PATH:lcr01100]; Biosynthesis of secondary metabolites [PATH:lcr01110] # 1 552 1 552 552 1102 99.0 0 MSTKECYSQDELRKDNPMFSRTRATIESAFYGNNVHEVTSVAEAYNLAKKQSGVIVTDLP ILHTKELGLPHGATQLVYNHGKILGRTASARHFVDNPNEDAEALDGNLREDIYKGHEQKY LKATVLVGLDPSFTVKAHIMMPEDQAFNLLSYILNFHFFDDEAEKLYEKSKFYDEPDIYF YFDPNVQDEDYPKGLGVFDAPHNCAAVFNLRYFGELKKGTLTLAWAIAHRHGYTACHGGE KSFHFDDKDDKTFAFYGLSGSGKSTLTHEMYDGKYDITVLHDDAFIISREDGSSVALEPS YFDKTHDYPAGHHETKYYTTIMNCDVTLDKDGKKVIVTEDLRNNNGRVIKTRYTSPHRVD FEKSPITALFWIMKDGSLPPIIKIDDPVLATTMGCTLATKRTSAENLPKGFDMNTLVIEP FADPFRAYPVSGDYRDFKELFTKRGASCYSLNTDAFMGKDIPKEVTKKLIEDLANGNIKD SDFKPFGNFKGVSYLPIDGYEVHLEDPEYQKTLAKRMQDRLNWLNKYDEEHPETPIQDEA KKTLEAIIKELS >gi|256541332|gb|ACPV01000142.1| GENE 28 25985 - 27388 775 467 aa, chain - ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 15 461 80 533 535 182 28.0 9e-46 MLLFYLVQNRIVMLLNIALKQEYFYSKFANSDMKQARGADVINSISGTAKEIEQKYFFGI TDIVQFVFNVVASAIVVVETNLILGIIYLLLSALTLIPSYIGKKRMNEKTEKWNKSNSQL IQAMKDIFEGRLEILNFGVRHLFFKRFDRILVNEEDKYRKMNNCQFQVQFIAWLISLVTL LLPIFIGLLFMQRGWFNVTVAAIITLSLSADRVVGYLRTIALYQTQIHSTDAIRKIKSYN FEESESVKQDNHDSQAILKIKDLSFSYGDKKILDGINLTLRDHDKIIVTGASGIGKSTLI NCIANNLKYNGEITFAGHQINPADFIKISQRIWLFQGTVRENLSLLQNIPDDLMLHEAKK MGLIHEFGNDFLDKLISDDANNLSGGQAQRLALVRGLIRSKKIYLLDEICSSLDPKNSDA IHKIIYQLPAIVIEIAHNYNPQLAQENKVQVYKLIDAKLQKQNYIEQ Prediction of potential genes in microbial genomes Time: Wed May 25 06:02:34 2011 Seq name: gi|256541331|gb|ACPV01000143.1| Lactobacillus crispatus 125-2-CHN cont1.143, whole genome shotgun sequence Length of sequence - 20836 bp Number of predicted genes - 19, with homology - 19 Number of transcription units - 11, operones - 4 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 486 - 537 15.5 1 1 Tu 1 . - CDS 542 - 808 226 ## gi|256844735|ref|ZP_05550220.1| predicted protein - Prom 910 - 969 5.0 + Prom 867 - 926 5.6 2 2 Tu 1 . + CDS 970 - 1824 624 ## LCRIS_00472 ranscriptional activator Rgg/GadR/MutR-family + Term 1912 - 1965 12.1 - Term 1892 - 1959 17.1 3 3 Tu 1 . - CDS 1970 - 2383 395 ## LCRIS_00471 NUDIX family hydrolase - Prom 2405 - 2464 11.8 - Term 2440 - 2493 1.4 4 4 Op 1 . - CDS 2533 - 2760 368 ## lhv_0500 hypothetical protein - Prom 2785 - 2844 7.7 5 4 Op 2 . - CDS 2847 - 3578 929 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit - Prom 3674 - 3733 5.2 - Term 3681 - 3721 6.1 6 5 Op 1 15/0.000 - CDS 3739 - 4908 1560 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases 7 5 Op 2 . - CDS 4911 - 5363 582 ## COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain 8 5 Op 3 4/0.000 - CDS 5379 - 7160 2033 ## COG2213 Phosphotransferase system, mannitol-specific IIBC component - Prom 7187 - 7246 8.6 - Term 7225 - 7264 8.4 9 5 Op 4 . - CDS 7295 - 9349 1149 ## COG3711 Transcriptional antiterminator - Prom 9371 - 9430 4.8 - Term 9388 - 9424 5.0 10 6 Tu 1 . - CDS 9450 - 11261 2474 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains - Prom 11322 - 11381 7.4 - Term 11374 - 11440 12.0 11 7 Op 1 6/0.000 - CDS 11458 - 12039 658 ## COG1454 Alcohol dehydrogenase, class IV 12 7 Op 2 . - CDS 11969 - 14053 2569 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 14236 - 14295 7.5 + Prom 14204 - 14263 7.4 13 8 Tu 1 . + CDS 14368 - 15741 955 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 15750 - 15782 2.0 - Term 15738 - 15769 -0.7 14 9 Tu 1 . - CDS 15773 - 16291 435 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 16365 - 16424 8.5 + Prom 16286 - 16345 5.9 15 10 Tu 1 . + CDS 16400 - 17281 763 ## COG0583 Transcriptional regulator + Term 17288 - 17326 7.2 - Term 17270 - 17321 10.5 16 11 Op 1 4/0.000 - CDS 17324 - 17692 371 ## COG4687 Uncharacterized protein conserved in bacteria 17 11 Op 2 13/0.000 - CDS 17696 - 18616 1218 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 18 11 Op 3 13/0.000 - CDS 18645 - 19454 1257 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 19 11 Op 4 . - CDS 19476 - 20483 1412 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 20516 - 20575 8.6 Predicted protein(s) >gi|256541331|gb|ACPV01000143.1| GENE 1 542 - 808 226 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256844735|ref|ZP_05550220.1| ## NR: gi|256844735|ref|ZP_05550220.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 88 1 88 88 156 100.0 4e-37 MSEGMKKLIKDLSDGKNISLENIDALVNKYHLSLEERQLLETKDEDDLKQLGLKRQGLTV VLTYNHSCLCGPHTLPTYIVSDKKEIRS >gi|256541331|gb|ACPV01000143.1| GENE 2 970 - 1824 624 284 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00472 NR:ns ## KEGG: LCRIS_00472 # Name: not_defined # Def: ranscriptional activator Rgg/GadR/MutR-family # Organism: L.crispatus # Pathway: not_defined # 1 284 1 284 284 501 99.0 1e-141 MYGQKFKALRLQQHISLEQAANRVISPSTLSRWENNKIDIRFNLVIKLLDNIHINLKEFT NYCKINHSNPFVAKVAMYYEANDDRHILQLIQSKKKEYQNSHNQFDLLLLAIACNCYYDL TDNNVFPVSYQKKLFYILSNIEYWTEMYINVFGNTVFLYDSKELYSISIRILKNLNSNTF NDFQEYYYALSSVINALTALIIKNPKLASQLLTKIEKVSIPKPISYLKIRTNVLKYLLDY RLGKTDEKLISIKLENLKWLGLTDIAKDLTFFFNRIKNDRSPLS >gi|256541331|gb|ACPV01000143.1| GENE 3 1970 - 2383 395 137 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00471 NR:ns ## KEGG: LCRIS_00471 # Name: not_defined # Def: NUDIX family hydrolase # Organism: L.crispatus # Pathway: not_defined # 1 137 1 137 137 220 96.0 1e-56 MKMEHSAGAVIYRKRANGELEYLIVQSVVNYNLGFPKGHLENDENAEEAARREVFEEVGL KPEFDFNFKEKVKYQLTENKEKTVVYFIAKYLAGQEVKTQKEEILASKWVSLVEAQKYLT EHGKMDVLTKAQNYIEQ >gi|256541331|gb|ACPV01000143.1| GENE 4 2533 - 2760 368 75 aa, chain - ## HITS:1 COG:no KEGG:lhv_0500 NR:ns ## KEGG: lhv_0500 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 75 1 75 75 102 88.0 6e-21 MADAKEIEETALIDRNMDQVFDWAKGNEMPIRDAIWDHEMEANGRDTMKTEAAVEWILKA DDDKVKDYCEKNLKK >gi|256541331|gb|ACPV01000143.1| GENE 5 2847 - 3578 929 243 aa, chain - ## HITS:1 COG:MA0409 KEGG:ns NR:ns ## COG: MA0409 COG0599 # Protein_GI_number: 20089302 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Methanosarcina acetivorans str.C2A # 1 234 1 246 250 226 45.0 4e-59 MSIKEDAQRAHANLLKVTDPEALERINHFAFNEVQADVDLPDRTKMLSTLAYLLGMQGKE EYEIMLPVALDNGVNPVEAKEVLYQAVDYLGLGRVSPFFKITNDVLTKRGVELPLAGQAT TTLDNRLEKGEETQMRLFGSQMKGFAKKGTINKWLVDNCFGDYYTRKGLDDNDREMITFC YIAAQGGCEPQLMAHAQANIKLGNDKEFLMKVIEQNVPFIGYPRSLNAVSVVNKADEAVN GKN >gi|256541331|gb|ACPV01000143.1| GENE 6 3739 - 4908 1560 389 aa, chain - ## HITS:1 COG:SP0397 KEGG:ns NR:ns ## COG: SP0397 COG0246 # Protein_GI_number: 15900317 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Streptococcus pneumoniae TIGR4 # 3 378 4 376 378 427 57.0 1e-119 MRAVHFGAGNIGRGFIGETLADNGFGIDFVDVNETIIDELNKRGEYDIELAAPGKKRIHV SNVDGINNAKDPDKVVEAIKSTDMITTAIGPKILAIIAPLIAKGLTARIQSGNTTPLDVI ACENMIGGSEHLKEEVYKHLDDDVKPELDKYIGFPNAAVDRIVPIQHNDDPLFVSVEDFK EWVIDESQMKNKDIKLKGVDYAPDLEPYIERKLFSVNTGHATVAYTGKSLGYDTIGDAIK DPFVLKQVKRVLSETRSLLYHKWNKEFTEESLEEYHNKILSRFQNPYISDDIARVGRTPI RKLGYNERFIRPIRELKDRGLDYSALMETAGRIYHFDEPNDKESVRLMQMLKDEDLKDVI VETTGLKDDPELVEEIVKSYHDAEEDAKN >gi|256541331|gb|ACPV01000143.1| GENE 7 4911 - 5363 582 150 aa, chain - ## HITS:1 COG:L32907 KEGG:ns NR:ns ## COG: L32907 COG4668 # Protein_GI_number: 15672005 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol/fructose-specific phosphotransferase system, IIA domain # Organism: Lactococcus lactis # 3 147 1 143 143 155 49.0 3e-38 MALQLDPKMIKLNQDVPTRDQAIRMAGQLLVDGGCVEPEYIDSMLARNEDVSTYMGNFIA IPHGTDEGKKYIKKTGISVVQIPMGVDFSDPKDDTEQLVTVVFGIAGLNNEHLNILSQIA IFCSDVSNVAKLADAQTPEKIIDLLKNVGD >gi|256541331|gb|ACPV01000143.1| GENE 8 5379 - 7160 2033 593 aa, chain - ## HITS:1 COG:SP0394 KEGG:ns NR:ns ## COG: SP0394 COG2213 # Protein_GI_number: 15900314 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannitol-specific IIBC component # Organism: Streptococcus pneumoniae TIGR4 # 5 580 2 575 589 523 51.0 1e-148 MAQAKSKSSVKVKVQKFGTALSGMIMPNIGAIIAWGLTAAFFMYPHGWFPNKEINNLVQP MLHYLLPLLIGYTGGRMVYEGRGAIAGAIGTLGVIVGTDQPMFLGAMIMGPLSAWLLKKL DQVFQDKIKSGFEMIYNNFSLGILGMIAAIFAFFIIGPIMEVGSQWASAGVNAIIRVHLL PLANIIIEPAKVLFLNNAIGNGILVPLGIQQAAQVGKSVLFLMESNPGPGLGILLAFTLF GKGKSKSSAPGAAIIEFFGGVHEIYFPYVLMKPSLILAAIGGGVTGTFLFTTLGGGLKAA ASPGSILAILLVSAKDAYFGNIVGVLGAAVVSFIIAAIILKNDKSTGDELEAKQAQMQAM KAQSKGQSMPEAEDAHESVKSYANVKKVIFACDAGMGSSAMGASLLRDKFKKAGIKVSVT NTAVRNLKDEDGLLVITQEELADRALQKTPHAMHVAVGNFLSSPKYDTIVASFKALTQVE DKPKAEKPVKKVGSLEGIDFSKVKEVDFIRHDQHLGTATMATSLFNDAIKKAGKTTPVKA VRINELTDDPSHLVIVTPAANKNLAVRYSDIQILVVDDLLKDKKLGEAIQKLN >gi|256541331|gb|ACPV01000143.1| GENE 9 7295 - 9349 1149 684 aa, chain - ## HITS:1 COG:BS_ydaA KEGG:ns NR:ns ## COG: BS_ydaA COG3711 # Protein_GI_number: 16077483 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 1 679 1 691 694 208 24.0 3e-53 MFLTQRQKHILQILLGNPSGVSIKQIEESLKISRRTVYREFGDLKKNDFKIENQKGKYFL SGDSKQLQEIKQSVQQSHSQNVISVAKREKIIAAKLLLSTEPCKIIQFALDLNVSEATIQ SDLNTVERSLKRYHIDLIRKKGVGLLIQAPEKIRRQVLVDIMLNQINEYNFFKYLHNETT SKDMFLTMIDKALLVEVADCLKKSVFGKIKLDSDQKLIELILTFAVTIKRTLAGCKLDFI HPSADSLKYQGYVYRFMALFAQKRQVEVDQNDVSYLANKLLSCDYHNTYLTYNERELAIS VKVKEFVQHVSEEMHWDFQKDHSFMTKVTKHVIGLVQHKVALLPDTPIEILAGLSQKFPD LYLAIQKYWHLAFPENYLTASELQLILLYFANEYTSRNQQRNLSALVICENGIGTSAILG AKLKREFSEIKEVKTSRVSALNQIDLSNYNLIFSTLRLKGFSRDYLLVSPLLLDDELIKI RAYLKDYEQKYPQPVPAKQVVEEKHPHSVEQLAKLSISTLFCSELVNGIKIQQLEYNSQD LIAVIQECLAHSDSTLIRKQMPVAKNLLKRVRMAPVGIPNSHIALLHTRSPEITRCSFTM FDLDNEISLQSMDHDTIQVKRVLLMLAPDNLTAPEQRVMSTISSMIIMSSQNLDLFTNGS QKEIKEAIAALFLQDLKDRLLGNQ >gi|256541331|gb|ACPV01000143.1| GENE 10 9450 - 11261 2474 603 aa, chain - ## HITS:1 COG:SP0266 KEGG:ns NR:ns ## COG: SP0266 COG0449 # Protein_GI_number: 15900200 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 603 1 602 602 683 58.0 0 MCGIVGVVGKPARDIILNGLTNLEYRGYDSAGIYLNDLNGNEYLTKAVGRISNLKEKLTP DEQGLVGIGHTRWATHGKPTVDNAHPHFDETKRFYLVHNGVIENYTELKEKYLQGVKFHS DTDTEVVVQLIGKIARDKNLDAFSAFKEALKLVKGSYAFLLVDNTEPDHVFIAKNKSPMM LGIGDGFNIIASDAISVLDQTKTFVDLQDGDVGDITKDSYTIETVDGKKVDREPHVLNID PNAASKGTYEFYMLKEIDEQPGVMRHMSQNYLDENGEPKVDQDIIDAISKADRLYIFAAG TSYHAGLVGKTIFEHYTGIPTEVGYASEAGYHFPMMSKHPFFIFLTQSGETADSRVVLKE ANKRGIPSLTMTNVEGSTLSREANYTMLLGAGPEIAVASTKAYTAQVALQAILAKALGEK LGNQDAKDWDLQHDLAIAAEGIQQIVDGKEKLKELADQYLVKSRNAFYIGRGIDHAVALE GALKLKEVSYIQTEGFAAAELKHGTISLIEDGTPVIALINDPVTADLTRGNIQEVASRGA SVITIVGKEFANSDDTIVLPEINYYMSALLTVVPTQLLAYYASKDKGLDVDKPRNLAKSV TVE >gi|256541331|gb|ACPV01000143.1| GENE 11 11458 - 12039 658 193 aa, chain - ## HITS:1 COG:SA0143_2 KEGG:ns NR:ns ## COG: SA0143_2 COG1454 # Protein_GI_number: 15925852 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Staphylococcus aureus N315 # 6 188 227 410 411 173 45.0 2e-43 MFQPWQLTSLVVGHLKKSYDGDLDARKRMHDAATIAGMAYSNAFLGLEHSIAHTVGSTFD IPSGVSDAIALPQVIRFNAKRPEKLAMWPHYSVYRAESDYADIARAIGLTGSSDAELVEK LVQKIIDLAESVGIKMAFKDYGVDKAEFDKKVDQLAVEAYGDQNTVTNPSAPLISQIAQL MRDSYEGKGIKNK >gi|256541331|gb|ACPV01000143.1| GENE 12 11969 - 14053 2569 694 aa, chain - ## HITS:1 COG:lin1675_1 KEGG:ns NR:ns ## COG: lin1675_1 COG1012 # Protein_GI_number: 16800743 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Listeria innocua # 18 460 13 455 455 502 54.0 1e-141 MAKTQQKETLTEDEKKKQIYDMVDNLVKKSHVALDQMANFTQEQVDKICEAVATAGEQNA YPLAKMAVEETKRGVVEDKTTKNMYASENIWNSLRHEKTVGVIEEDKELGLTKIAEPKGV IAGVTPVTNPTSTVIFKAMLALKTRNTIIFGFHPQAQKCCVETGKIIRAAAVAAGAPADA VQWIEEPSLDATTDLMTNPGVQTILATGGPGMVKAAYSSGKPAIGVGPGNGPSYIEKTAN IDRAVYDIVLSKNFDNGMVCASENSVVVDTEIYDKVKEEFKKWNCYFLNKGEIKKFEEHF IDPRRGTVAGPVAGKSAYEIAKLCGVDVPKTTKVIIAEYKGVGRNFPLSAEKLSPVFTLY RAKNHDDAFKICTDLLNYGGRGHTAGLHSTDKKIIDEFAMKMDACRILVNSPAALGGIGD LYNNMLPSLTLGTGSYGANTFSHNIGAKDLLNIKTVAMRRDNMQWVKVPSKTYFEHNAAN YLRHMPNVNRFFIVTDEGVADQGFADEITDIISKRLGQKEYEVFKAVTLDPNTDVIKDGV HRMNIFKPDVIIAIGGGSVMDAAKAMRLFYENPEMSFEEAYQKFLDIRKRVVRFPKINGV QLVCIPTTSGTGSEVSPIAIISDAKTGIKHTLCDYALTPDVSIVDDQFVQTLPKRLIAWS GFEALGHAIESYVSTMATDFTRGWSLEEVLRWRS >gi|256541331|gb|ACPV01000143.1| GENE 13 14368 - 15741 955 457 aa, chain + ## HITS:1 COG:BS_ydgF KEGG:ns NR:ns ## COG: BS_ydgF COG1113 # Protein_GI_number: 16077629 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Bacillus subtilis # 13 450 16 452 458 365 43.0 1e-101 MSEKKTQTASGYKRTLSNAHIQLIALGGTIGTGLFLGVGDSIHRAGPSVILIYIIVGIFL FLLMRALGELIMSDLNKHTYIDFIEQYLGKNIGFITGYLYWLSWITLGMAETTALGIYFK YWFPTLKPWIPGIITIVILLLINLISARVFGNLEFSFAIIKIVTIIAFVILILYLLVTGG KTSFGPVSFANLDDHGGFFARGSKGFLQGFQMVIFSFIGVELIGLTAAEAQKPETTLKRA INQLPIRIILFYVMAILGILLVIPWSKVATNASPFVEALGATGIKNASSIINFVVISAAV SSTNSFLYSAGRLLFSVTFDGKGKWNKTFGHLSRRQLPQNALTLSALLMGCAPLITLVIG DQAFNFISSTSTSMFLIIWSLMILTHMAYRRKTAANQLNDFQMPGYPYIDYVILSFFVLM IILLLILPSYRVPMVAAIAIFIVLYIISKIWSNEKAV >gi|256541331|gb|ACPV01000143.1| GENE 14 15773 - 16291 435 172 aa, chain - ## HITS:1 COG:lin0451 KEGG:ns NR:ns ## COG: lin0451 COG0110 # Protein_GI_number: 16799527 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Listeria innocua # 11 170 27 186 189 184 55.0 1e-46 METEDHDLRRKLAQQNQRLLQNLNTQRHCSCEVRQLISEIIGQKIAASIEIRLPFYSDYG HNIKLGERVFINANVMMVDLGGITIENDVLIGPGAYLISVNHKLDPQHRKELELKPVVIK QNAWIGAKATILPGVTVGKNAVVAANAVVTKDVPANTVVAGNPAKIIKKIAK >gi|256541331|gb|ACPV01000143.1| GENE 15 16400 - 17281 763 293 aa, chain + ## HITS:1 COG:lin0450 KEGG:ns NR:ns ## COG: lin0450 COG0583 # Protein_GI_number: 16799526 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 289 1 288 291 189 35.0 4e-48 MELRVLNYFVATAQELNMTRAAQKLLVSQPALSRQIADLEDELGVKLFNRQPRHLTLTPA GQYLYEQAKEILTLASKTKSNLQSSAVISGDLTIAAGESFAMQRLMNIVSNIIRDYPTVK IHILSGDYEFAERRLDTGAVDFAVIIGNLPLDNYASLQLPEKDTWGVLMTKDDPLAKKSA ITAEDLVGRNVLNSQQAENRKYFDSWFGNYKEQINIIGTVNLNFNGTLLVKNKAAIMLTL DKLANISDESNLTFRPITPMLKQPVTVIWKRETNKSPVADLFLNRLRASIDDD >gi|256541331|gb|ACPV01000143.1| GENE 16 17324 - 17692 371 122 aa, chain - ## HITS:1 COG:CAP0069 KEGG:ns NR:ns ## COG: CAP0069 COG4687 # Protein_GI_number: 15004773 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 121 12 131 135 128 52.0 3e-30 MAKSINTKVDLTVDATWFRGIASYGKIMIGDRAFEFYNERNVEDYVQIPWNEVTYVVADV RFGGRYIPRFEIRTKSNGKFVFAARDSKKVLRAIRKYVPADHMRRALSLWQRLKQRFSRK KK >gi|256541331|gb|ACPV01000143.1| GENE 17 17696 - 18616 1218 306 aa, chain - ## HITS:1 COG:lin0145 KEGG:ns NR:ns ## COG: lin0145 COG3716 # Protein_GI_number: 16799222 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 4 306 3 303 303 415 68.0 1e-116 MADKKTKLTKRDRFNVMWHSQFLQGSWNYERMQNGGYAYSMIPALRKLYPNKKDLSAALQ RHLVFFNTHPYLASPVLGVTLALEEDKANGAEVTDDAIQGVKVGMMGPLAGVGDPVFWYT VRPIVGALGASMAIAGNVMGPILFFVIWNIIRIAFLWYTQEFGYKAGSAITSDMSGGMLQ KVTRGASMMGMFVLGALIERWVNIKFTPIVSQTPIQKGGYIEWDKLPSGAKGIQSALQQW DMGNGKALSSTKVTTLQDNLNQLIPGLAGLLLTFFCMWLLKKKVSPIWIIIGIFVVGVLF HVWGIL >gi|256541331|gb|ACPV01000143.1| GENE 18 18645 - 19454 1257 269 aa, chain - ## HITS:1 COG:lin0144 KEGG:ns NR:ns ## COG: lin0144 COG3715 # Protein_GI_number: 16799221 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 269 1 268 268 265 67.0 7e-71 MNAIQMILVVFVAFLAGMEGILDEWQFHQPLVACTLIGLVTGHLDLGVALGGSLQMIALG WANIGAAVAPDAALASVASAIILIEGGQGIKGIGTATGIAIPLAVAGLFLTMIVRTISTA IVHIMDAEAKKGNWRMINLWQWIAVCLQGLRIAIPAALLLAIPSGTVRSWLAMMPQWLNE GMTIGGAMVVAVGYAMVINMMASKEVWPFFAIGFALAAIKDLTLIALGAIGLSMALMYLA LEAKGGNGGNNNSGDAGTGDPLGDIIDDY >gi|256541331|gb|ACPV01000143.1| GENE 19 19476 - 20483 1412 335 aa, chain - ## HITS:1 COG:CAP0066_2 KEGG:ns NR:ns ## COG: CAP0066_2 COG3444 # Protein_GI_number: 15004770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Clostridium acetobutylicum # 169 335 1 168 168 206 62.0 5e-53 MVGIVLASHGGFADGIAQSAQMLFGEQDNFAHVILKPDEGPDDIRGKMEKAIASFDNQDE VLFLVDLWGGTPFNQANGLAEKHDKWAIVAGMNLPMVVQALTERMMDANATAKHIATAVV QPGRDGIKTKPADLMPKTAAAAPVADKAAAKGSKKSIPEGTVIGDGHIKYVLARIDSRLL HGQVATGWIPAMKPDRVIVVSDSVAKDDLRKSMIREAAPAGVKAHTVPLKKMQEIAKDPR FGNTHALLLFENPEDVLRAIKGGIDLKNINVGSMSYKEGDVNANNVLSMNQKDVDTFREL EKMGVKFDVRKVPSDAPGNMDAILKKAQTLLDEKK Prediction of potential genes in microbial genomes Time: Wed May 25 06:02:52 2011 Seq name: gi|256541330|gb|ACPV01000144.1| Lactobacillus crispatus 125-2-CHN cont1.144, whole genome shotgun sequence Length of sequence - 6533 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 63 - 135 86.2 # Lys TTT 0 0 + TRNA 149 - 230 61.1 # Leu TAG 0 0 + TRNA 255 - 327 80.3 # Thr TGT 0 0 + TRNA 338 - 409 79.2 # Gly GCC 0 0 + TRNA 421 - 506 62.2 # Leu TAA 0 0 + TRNA 515 - 588 71.3 # Arg ACG 0 0 + TRNA 594 - 667 86.9 # Pro TGG 0 0 + TRNA 698 - 771 73.7 # Met CAT 0 0 + TRNA 785 - 858 86.9 # Met CAT 0 0 + TRNA 882 - 955 76.8 # Met CAT 0 0 + TRNA 959 - 1032 68.6 # Asp GTC 0 0 + TRNA 1039 - 1111 76.1 # Phe GAA 0 0 + TRNA 1130 - 1200 65.5 # Gly TCC 0 0 + TRNA 1207 - 1281 90.5 # Ile GAT 0 0 + TRNA 1284 - 1376 53.4 # Ser GCT 0 0 + TRNA 2130 - 2201 63.8 # Glu TTC 0 0 + TRNA 2235 - 2321 64.3 # Ser TGA 0 0 + TRNA 2333 - 2406 76.8 # Met CAT 0 0 + TRNA 2410 - 2483 66.5 # Asp GTC 0 0 + TRNA 2490 - 2565 78.8 # Phe GAA 0 0 + TRNA 2569 - 2650 63.7 # Tyr GTA 0 0 + TRNA 2655 - 2725 45.5 # Trp CCA 0 0 + TRNA 2738 - 2813 57.1 # His GTG 0 0 + TRNA 2818 - 2889 69.8 # Gln TTG 0 0 + TRNA 2913 - 2983 66.1 # Cys GCA 0 0 + TRNA 3025 - 3109 60.0 # Leu CAA 0 0 2 1 Op 2 4/0.000 + CDS 4410 - 5453 1020 ## COG0438 Glycosyltransferase 3 1 Op 3 . + CDS 5453 - 6466 653 ## COG0392 Predicted integral membrane protein Predicted protein(s) >gi|256541330|gb|ACPV01000144.1| GENE 1 3231 - 4409 1130 392 aa, chain + ## HITS:1 COG:SPy0516 KEGG:ns NR:ns ## COG: SPy0516 COG0438 # Protein_GI_number: 15674620 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 390 1 390 444 350 46.0 4e-96 MNIGLYTDTYFPQISGVATSIKTLKEALEKQGHNVFIFTTTDPNVKKGTVEPNVFRFSSI PFVSFTDRRIAFRGLFEATKVAKEVNLDIVHTQTEFALGTIGKYVAHQLDIPAIHTYHTM YEDYLHYILNGHLLRPYHVRQFVKSYLKNMDGCIAPSGRVEELLRRYGVQIPIRVIPTGV DLQGMNNDIQRDVRQELGIDQDAPVILTLSRIAAEKKINHILNVMPEIIDEFPNVKFVIA GDGPDVDVLKDQVERLTLENYVIFVGNVEHGDVGNYYRMADLFVSASDTETQGLTYIEAL AAGTPCVVYDTDYTENIFDQDIFGQTFTTQQEMLEEIITLLKQGTKRIPQELLQNKLQKI SADQFAKNVSDFYQYAIDHYQPKHDEETKKRN >gi|256541330|gb|ACPV01000144.1| GENE 2 4410 - 5453 1020 347 aa, chain + ## HITS:1 COG:SP1075 KEGG:ns NR:ns ## COG: SP1075 COG0438 # Protein_GI_number: 15900944 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 6 342 1 338 338 350 50.0 2e-96 MIRINMFSQADSVKGQGVGSAYNELIKLLRTHLVDEFYVTINKYGNSDLTHYHTINPTYY ANSFSPARGRKIGYVHFLPDTLEGSIKLPGVAKKVFYQYVIDFYKRMDQIVVVNPIFIDK LVNYGIDRNKVRYIPNFVSKTEFYEESLASKNAFRHELGIPLDKFVVFGDGQVQERKGID DFVKMAQANPDIQFIWAGGFSFGKITDGYDHYKEMVDNPPKNMTFAGIVEREKLVKYLNI ADLFVLPSYDELFPMSVLEAFSCGTPVLLRDLDLYKAIIDGYYLSGKDFGEMNQVLQKVV ANPQTLQKYSELSRKASQQYSEDHLAKIWDEFYHEQYELGKELGQIH >gi|256541330|gb|ACPV01000144.1| GENE 3 5453 - 6466 653 337 aa, chain + ## HITS:1 COG:lin2698 KEGG:ns NR:ns ## COG: lin2698 COG0392 # Protein_GI_number: 16801759 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 3 324 6 326 357 174 36.0 2e-43 MNKKHLWGILVVLAISAFVLYADLKATPISEILRAAHGLNIFALIMVFALMLLSYVCEAG ILATLAHRKKEPKRSAWSFLRIPIIQALFNAITPMSTGGQPSQLAAMIQMGMEGGRSTSI LLMKFIIYQIVVLFAYVFTIIFGFHMVMTKFAGLAIFIAIGFLIHVSSIIFLLAIMFAYR FTKKATNWLMDLLAKMMKKERVEKWRKATLEKIDTFYAESQKLKKEKKKLFVASLLTVLQ LLFFYSVPFMVLTALNVPCSWYQVTQMNIMIIMFMAIIPIPGASGGAEYSFQTLFSTFIS SHGALILAMFIWRFSTYFFGMLLGILGWIFETVKSFV Prediction of potential genes in microbial genomes Time: Wed May 25 06:02:54 2011 Seq name: gi|256541329|gb|ACPV01000145.1| Lactobacillus crispatus 125-2-CHN cont1.145, whole genome shotgun sequence Length of sequence - 5549 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 22 - 81 7.2 1 1 Op 1 . + CDS 117 - 2177 1295 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily 2 1 Op 2 . + CDS 2260 - 2478 260 ## LCRIS_00448 preprotein translocase + Term 2487 - 2525 3.1 3 2 Op 1 10/0.000 + CDS 2551 - 4890 1356 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 4 2 Op 2 . + CDS 4903 - 5361 445 ## COG0691 tmRNA-binding protein + Term 5365 - 5400 4.4 Predicted protein(s) >gi|256541329|gb|ACPV01000145.1| GENE 1 117 - 2177 1295 686 aa, chain + ## HITS:1 COG:BS_yfnI KEGG:ns NR:ns ## COG: BS_yfnI COG1368 # Protein_GI_number: 16077793 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Bacillus subtilis # 11 653 18 653 653 595 50.0 1e-170 MEHTKSFFRWLTQTKLGFFTIVLVLFWLKTYFIYLTKFNLGAVGPMQQFLLLINPIPSGM LLLGIGLFFKGRKSYWIILVIDFLLTLWLFANILYYREFSNFLSFSIIKTSGSTSDNLGK SIAGITLASDFLAFADIAVIIVLLATKVIKMDVRPLKLKVNLLIEALAVSLMGLNLLMAQ NDRSGLLTRTFDNNYIVKYLGINEYAIYDGYKTAQTSAQMAKANVSDLKSVRNYLKENYV KPNPAYTGVAKGKNVLIIHLESFQQFLIGYKWKGKEVTPNLNKIYHQKETISFDNFFNQV GQGKTSDAEMMLENSLYGLQSGSAMSTYGTSNTFESAPAILHQQAGYTTAVMHGGAGSFW NRNNAYKSFGYQYFMPLSFYQNKPSYYIGYGLKDKIFFDQSIKYIERLPQPFYLKMITVT NHYPYNIDKKNQTIDKTNTGDETVDGYVQTAHYLDQAIGEFMRWMKKTGLDKKTLVVFYG DHYGISGNHHKASAELLKKDSFNDFDNLQFQRVPLMFHMKGLKGGINHTYGGEIDVLPTL LNLLGIKDKDTIQFGYDLLSKNAPQIVAQRNGDFITPEYSKVGSDYYDTKTGERIKPNKK LKEKLTAISNTVTTQLSLSDRVINGNLLRFYKPKGFTRVKPKDYDYNKAPSLKRLFDDPS KTSLWYQNHRKTTQKDFKTDAPELKK >gi|256541329|gb|ACPV01000145.1| GENE 2 2260 - 2478 260 72 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00448 NR:ns ## KEGG: LCRIS_00448 # Name: secG # Def: preprotein translocase # Organism: L.crispatus # Pathway: Protein export [PATH:lcr03060]; Bacterial secretion system [PATH:lcr03070] # 1 72 6 77 77 92 100.0 5e-18 MTLLIIVSILIVIATMMQPQKQQDALNALSGGAVFSGQTKKRGFEAFMEKVTSVLLVLFF VFAIILAYMSSK >gi|256541329|gb|ACPV01000145.1| GENE 3 2551 - 4890 1356 779 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 11 722 7 703 730 526 41 1e-149 MAQNEKILAGVLEIFRHNPQKQFRVDQIEREARRDRLGNFTELIKALSFLEHDKKIITDG KGQYQLAQENTEVEGEFRANDKGFGFVRLDDENADDVFVAADYTKYAVNGDRVKVKITAG GNPWNGKGPEGQVEEILEHGLETLVGEFHPLTDEQRKNSHFIGYALSNDKKLHKYRVYLS ENGLIPQMGDMVKVSIKDYPDEENPESMTGAVVNIIGNKNDPGVDIMSIVAAHDVRTEWP EDAMAQANAIPDHVTEEEKKGRVDITDQPAVTIDGDDSKDFDDAVVLWKKPNGNYHLGVH IADVSHYVTENTPLNEEAFARGNSTYLVDRVIPMLPFRLSNGICSLNEGVDRLVLSCDME ITPEGKRVGYKIYPSVMRSHGRMTYNKVNKTLKGEMNGLEDKYVKLRPMLEEMADLHAAL YKQRHQRGAIDFEEPEAKIIVDDQGKPTDIVLHERGTAEKMIESFMLMANETVAEDFFKK HVPFLYRVHETPDAERIKTFFEFCSAFGLNIHADPNNVKPIDLQKVVSKTTDTPEEAVVQ MMMLRSLKQAHYSEEALGHFGLAAEYYTHFTSPIRRYSDLMVHRMIHAYQDQGTNEEVQK HFASYLPDVAEQTSTQERRSIDTEREVNDLKMTEYMADQVGQHFDAVVSSVTSFGMFIQL PNTIEGLIHISNLTDDFYSFNEKALTLTGRGTHKQYKVGMPIKVTLINANVEQHQLDFEI YDPNAPKHKHNDRGMNNRRRGNRGFRNNHGRRGGQFNNHSDHGRGRGNGNRGGRRNFKH >gi|256541329|gb|ACPV01000145.1| GENE 4 4903 - 5361 445 152 aa, chain + ## HITS:1 COG:BH3552 KEGG:ns NR:ns ## COG: BH3552 COG0691 # Protein_GI_number: 15616114 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Bacillus halodurans # 4 148 6 150 157 167 60.0 5e-42 MKKEKEDNLIAQNKKARHDYFIKETLEAGIALTGTEIKSVRARRINLRDGYVQIVNGQAW LENVHISEYKQGNRYNHEPLRSRRLLLHKKEIARLAKAQSERGIAIIPLKVYLKHGFAKV LIGVGQGKKEYDKRQTIKERDQKRDIRRKYGV Prediction of potential genes in microbial genomes Time: Wed May 25 06:02:57 2011 Seq name: gi|256541328|gb|ACPV01000146.1| Lactobacillus crispatus 125-2-CHN cont1.146, whole genome shotgun sequence Length of sequence - 3195 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - 5S_RRNA 6 - 106 97.0 # CR954253 [D:694129..694245] # 5S ribosomal RNA # Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. - LSU_RRNA 107 - 3161 96.0 # CP000517 [D:78167..81218] # 23S ribosomal RNA # Lactobacillus helveticus DPC 4571 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:02 2011 Seq name: gi|256541327|gb|ACPV01000147.1| Lactobacillus crispatus 125-2-CHN cont1.147, whole genome shotgun sequence Length of sequence - 2055 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - SSU_RRNA 104 - 1658 99.0 # AB008206 [D:1..1556] # 16S ribosomal RNA # Lactobacillus crispatus # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:03 2011 Seq name: gi|256541326|gb|ACPV01000148.1| Lactobacillus crispatus 125-2-CHN cont1.148, whole genome shotgun sequence Length of sequence - 2602 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 18/0.000 - CDS 1 - 2008 1875 ## COG0209 Ribonucleotide reductase, alpha subunit 2 1 Op 2 4/0.000 - CDS 2001 - 2426 440 ## COG1780 Protein involved in ribonucleotide reduction 3 1 Op 3 . - CDS 2407 - 2601 169 ## COG0208 Ribonucleotide reductase, beta subunit Predicted protein(s) >gi|256541326|gb|ACPV01000148.1| GENE 1 1 - 2008 1875 669 aa, chain - ## HITS:1 COG:SPy0427 KEGG:ns NR:ns ## COG: SPy0427 COG0209 # Protein_GI_number: 15674554 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 7 669 5 667 726 950 69.0 0 MTDNLNNDSYISLNALAKFKDEKGNYNFKADKEATKQYLENHIEPRMKKFASLEEKLAYL VDNDYYDKKVLDLYTAKFIKEIFKLAYAQNFSFLNFMGAAKFYKAYALKTNDNKQFLERF EDRAVMNALFLADGNEELALNLVKDIISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDN MESISRAISTSLQLSKRGGGVALCLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYAN QLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKM ALFSPYDIKREYGKPMSDISITKEYQNLLNNPRIKKTFISARKFFQTIAEVQFESGYPYI MYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTYNKDLSFNKTGYDVCCNLGSLNIAA AMNSADKLGDLVSDSVQALNRVARSSDLDCAPSIEKGNKANRAIGLGAMNLHGFLATNHI YYDSPEAVEFTGIFFYTIAYHAFKESNKLAETYGAFKGFKDSSYASGDYFKKFIDEDVSP KTDKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQP VVAPVETRKEADLGRIYVPAYKINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISL TLFVEDNAT >gi|256541326|gb|ACPV01000148.1| GENE 2 2001 - 2426 440 141 aa, chain - ## HITS:1 COG:MPN323 KEGG:ns NR:ns ## COG: MPN323 COG1780 # Protein_GI_number: 13508062 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Mycoplasma pneumoniae # 9 135 20 147 153 158 62.0 3e-39 MMTGISKKPLVVYYSSTSNNTARFVEKLDCNSIRIPIKLSKEISVSEEYILITPTYSGGH GTTGAVPKQVIHFLNKLANRQKCIGVIASGNTNFGNSFALAGDVISKKLHVPYLYKFELL GTTEDVNNVNKIIADAGEDND >gi|256541326|gb|ACPV01000148.1| GENE 3 2407 - 2601 169 64 aa, chain - ## HITS:1 COG:MG229 KEGG:ns NR:ns ## COG: MG229 COG0208 # Protein_GI_number: 12045084 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Mycoplasma genitalium # 1 64 277 340 340 116 84.0 8e-27 YNAGKFLQNLGYDSPFTAEETYVSPEVFAQLSAQADENHDFFSGNGSSYVMGTGEETTDD DWDF Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:04 2011 Seq name: gi|256541325|gb|ACPV01000149.1| Lactobacillus crispatus 125-2-CHN cont1.149, whole genome shotgun sequence Length of sequence - 1867 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 23/0.000 + CDS 73 - 801 331 ## COG2963 Transposase and inactivated derivatives 2 1 Op 2 . + CDS 876 - 1808 667 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|256541325|gb|ACPV01000149.1| GENE 1 73 - 801 331 242 aa, chain + ## HITS:1 COG:L28615 KEGG:ns NR:ns ## COG: L28615 COG2963 # Protein_GI_number: 15672622 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 68 238 4 172 185 62 29.0 1e-09 MSRKSKYSFDQKIWAVEQYLNGNRSSVEIAKRLKMPSKSGAMQVRRWVHQYQSNRDTLLS NAQYNNHYSKAFKEKVVQEYLAGKMSLPSLANKYGIRSNGTVSEWVSKYNSHIENRDYDP HPEVYMTKARRKTTQQERIQIVQYCLNHDKNYTQTAVKFDCSYQQVYSWTHKYLANGETG LTDKRGRHKKPEELTELELANRKIKELERQLKEEQTKNEFLKKLDQLERMCLPDNQDTDK PQ >gi|256541325|gb|ACPV01000149.1| GENE 2 876 - 1808 667 310 aa, chain + ## HITS:1 COG:yi5B KEGG:ns NR:ns ## COG: yi5B COG2801 # Protein_GI_number: 16131429 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1 271 16 277 283 142 35.0 7e-34 MCKWAKIARSAYYKYFDPKRKPSKREERDKKIEAKIIEITKSNNSLFGTEKMTMAVNRQM SDEKPVYHKTVYRLMCINGIRSQKPRYQKLKFKHTTPEKTAENKLKRDFNASRPNEKWCT DITEVVAANLPKAYLCTVFDLYDRYPVGYAISKRNDTALVQAAYKQAVKAYPNAHPLFHS DRGFQFTRAPFQNQLEDQGMTQSMSRVGCCIDNGPMEGWQGIIKEMRVILHPQVASYDEL NDSICKTIDYYINEDPQKRFNGLTAGEMRKEAMKGNIKNCPIAPNHRIEKYWQKIHEKKI REAKKSSADY Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:05 2011 Seq name: gi|256541324|gb|ACPV01000150.1| Lactobacillus crispatus 125-2-CHN cont1.150, whole genome shotgun sequence Length of sequence - 1826 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 - CDS 3 - 942 555 ## COG3666 Transposase and inactivated derivatives 2 1 Op 2 . - CDS 1007 - 1684 472 ## COG3666 Transposase and inactivated derivatives - Prom 1739 - 1798 5.5 Predicted protein(s) >gi|256541324|gb|ACPV01000150.1| GENE 1 3 - 942 555 313 aa, chain - ## HITS:1 COG:BH2070 KEGG:ns NR:ns ## COG: BH2070 COG3666 # Protein_GI_number: 15614633 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 1 292 259 548 618 201 42.0 1e-51 MKKYEEAKEIFAGRNSYSKTDHDATFMHMKEDHMKNGQLKPGYNIQAATTDQYVVDFALY PNPTDFRTFEPFLKQMTTLDKFDKIVADAGYGSEYNYSMLEEEYSDKKYYIPYTMYEKEK TRKYRNDPTKLANWFYDEKDDYYLDQNGVRFNFKYYSQRKDRSTGQVRDFKVYEADEFQL TPELERLAKTKSGRQRQVRYNPNWQYLKEKAKSVLQSPEGRHIYSMRKYDVEPIFGHLKN VFGMRRTHLRGKKKVETDIGIAFMMVNLSKYWNRRWSKDQFSLFKNKNRQKKTVKQLKLR VGLIVFQYLRVSF >gi|256541324|gb|ACPV01000150.1| GENE 2 1007 - 1684 472 225 aa, chain - ## HITS:1 COG:BH0682 KEGG:ns NR:ns ## COG: BH0682 COG3666 # Protein_GI_number: 15613245 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 1 218 1 220 522 170 40.0 2e-42 MYQNYTIGQTALTLNLDFAIPHNHLANTISWFVDSIPEDVLLGNTAKTGRPAYHPAMMLK ILLFAYSRRVFSGRKIELMLEENVPMMALAEHQQISYHTINNFRSSKHANELVKKSFLYF TNLLEAEGLINEGAIFIDGTKIEADANRYTFVWRKAVEKFHDKLKGQAVELYDELIAKEV VKAMAKEKVQTSQGLAELAQETEAEIEKLTEEIEQEPQSNPWRFA Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:06 2011 Seq name: gi|256541323|gb|ACPV01000151.1| Lactobacillus crispatus 125-2-CHN cont1.151, whole genome shotgun sequence Length of sequence - 1815 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 254 - 496 205 ## lhv_0511 transposase 2 2 Tu 1 . - CDS 613 - 1026 118 ## FI9785_169 putative transposase - Prom 1260 - 1319 7.5 Predicted protein(s) >gi|256541323|gb|ACPV01000151.1| GENE 1 254 - 496 205 80 aa, chain - ## HITS:1 COG:no KEGG:lhv_0511 NR:ns ## KEGG: lhv_0511 # Name: not_defined # Def: transposase # Organism: L.helveticus # Pathway: not_defined # 1 71 183 253 285 126 80.0 3e-28 MINAHPINHYLLGDEGYLGKDLTAELKGMGYVLWTPYRRNMKGAKKHNDHQLMAIRRTIE SDFSLLSWFSAAARNSHFSL >gi|256541323|gb|ACPV01000151.1| GENE 2 613 - 1026 118 137 aa, chain - ## HITS:1 COG:no KEGG:FI9785_169 NR:ns ## KEGG: FI9785_169 # Name: not_defined # Def: putative transposase # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 137 1 139 285 260 90.0 1e-68 MNYLKLNRFSHHLQVSFARLNVICRSLYKLCAPDELKHRKNVDQVKISDSSILAMLIWQT EIGIESQRRFCKFFVGLSHSRFNRRARMLLPLMRCIRQDWNQEVKTAGEFLIIDSFPVCQ PIRNYRVKIFRGIADIG Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:10 2011 Seq name: gi|256541322|gb|ACPV01000152.1| Lactobacillus crispatus 125-2-CHN cont1.152, whole genome shotgun sequence Length of sequence - 1760 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 371 - 1612 1322 ## COG3547 Transposase and inactivated derivatives Predicted protein(s) >gi|256541322|gb|ACPV01000152.1| GENE 1 371 - 1612 1322 413 aa, chain + ## HITS:1 COG:FN1357 KEGG:ns NR:ns ## COG: FN1357 COG3547 # Protein_GI_number: 19704692 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 3 409 2 386 391 119 28.0 9e-27 MKLFVGIDVSSKDLQVVALDSEDQNKRLINDSFVNDLYGASELKKQILDLAQNKHYDQII IGMEATSIYSFHPAYFFQNDEDLQKLNVETDVINPKETSRFHKVFEESKTDPLDAYYIAL YLSFGHYRVSIARQDNYLALERLTRTRYELVQELTRTKQHFIEALYYRVNKLITVDKDKI NTPLFGATMMSIVTDSKTLDEIADMPTEDLISYLQVKGRGRFSDPDTLAKAIKKAVRGSY RLGKVMTDSIDAVLSVHYNMIQSFNESIKDLEKAIDRIVDALPESKILESIPGIGKTYTA GIIAEIGSIDRFDKEEQLAKYAGLTWNQYQSGDHSNEHTPMARTGNRYLRYYLIEAANLA RLHDPVFKKYYQKKYDEAVYSPHKRACTLTARKLVRVIFKLLKDDKLYRTPRS Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:11 2011 Seq name: gi|256541321|gb|ACPV01000153.1| Lactobacillus crispatus 125-2-CHN cont1.153, whole genome shotgun sequence Length of sequence - 1681 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 107 - 147 -0.2 1 1 Tu 1 . - CDS 193 - 1419 448 ## COG3547 Transposase and inactivated derivatives - Prom 1598 - 1657 7.0 Predicted protein(s) >gi|256541321|gb|ACPV01000153.1| GENE 1 193 - 1419 448 408 aa, chain - ## HITS:1 COG:SPy0732 KEGG:ns NR:ns ## COG: SPy0732 COG3547 # Protein_GI_number: 15674786 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 205 388 13 194 196 110 35.0 5e-24 MESQIIFGIDVSSKSSTVCVVNDRIKQGESFRISNDSFGYQKLYEQLNQYLITPLVVFEA TGVYSLSLQAFLEDYHIKYLKLNPLKAKKLMDNNLRHNKTDKVDAYRLALIQFNAPQKLR DPQPREYHELQNASRYYEELTRSIVTTKNQLHRNLQSTFPQIEEILSHPSGRIYWALVSL FPHAGYVLEKNETQVTQMLNSISGIGQQRARYLTTRLYAFAREAYPYDSKDSIIVRAIQR NISNLFSLQQERDYVINYMEKLAKAVNARALSIYLSIPGVARITAVRLVAELGDLRRFST SAQIDAFVGIDPGRYQSGEKDSSLGITKHGNHIARKILYRVITQMETVKATQPCHITDYY DKKKRSSNRQGYKKIAIASVHKLIRTMFALIKHDQLYDYNIATENKRL Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:12 2011 Seq name: gi|256541320|gb|ACPV01000154.1| Lactobacillus crispatus 125-2-CHN cont1.154, whole genome shotgun sequence Length of sequence - 1595 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 602 - 1543 326 ## lhv_1982 transposase Predicted protein(s) >gi|256541320|gb|ACPV01000154.1| GENE 1 602 - 1543 326 313 aa, chain + ## HITS:1 COG:no KEGG:lhv_1982 NR:ns ## KEGG: lhv_1982 # Name: not_defined # Def: transposase # Organism: L.helveticus # Pathway: not_defined # 1 306 1 303 306 419 66.0 1e-115 MTLGWTDGASFMPINSVLLSSQKLQNMIGENKVFDQRTIAGQRRMLARTKGTDVMVNLID QAMKAGHQAKYVLFDSWFSNPHQIVQLKQRKLDVIAMVKVSSKIKYEFEGERKNIKQIYR SCKKRCGRSRYLLSIPVKVGRQDKDGAKIDARIVCVRNRANRKDWLAIICTDMSLSEDEI IRNYGKRWDIEVFFKTCKSYLKLSTEYHGLSYDALTAHVAIVFTRYMLMSVAKRDDEDER TLGELFYCMIDELADITFSHSLQLITDAMLASVKQVFHASEAQIAEFTADFINRLPKYMQ KLLKKTSKNNIEA Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:16 2011 Seq name: gi|256541319|gb|ACPV01000155.1| Lactobacillus crispatus 125-2-CHN cont1.155, whole genome shotgun sequence Length of sequence - 1594 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 387 - 1547 364 ## lhv_1982 transposase Predicted protein(s) >gi|256541319|gb|ACPV01000155.1| GENE 1 387 - 1547 364 386 aa, chain + ## HITS:1 COG:no KEGG:lhv_1982 NR:ns ## KEGG: lhv_1982 # Name: not_defined # Def: transposase # Organism: L.helveticus # Pathway: not_defined # 72 377 1 303 306 417 65.0 1e-115 MRNVHVNWLHFTTLLSAQIINNHLRSLTSEKRADCFVVDDSYFSRTGFKKTELVAKVFDH VSMTYKKGFRMMTLGWTDGASFMPINSVLLSSHKLQNMIGENKVCDQRTIAGKRRMLART KGTDVMVNLIDQAMKAGHQAKYVLFDSWFSNPHQIVQLKQRKLDVIAMVKVSSKIKYEFE GERKNIKQIYRSCKKRRGRSRYLLSIPVKVGRQDKDGAKIDARIICVRNRANRKEWLAII CTDMSLSEDEVIRNYGKRWDIEVFFKTCKSYLKLSTEYHGLSYDALTAHVAIVFTRYMLM SVAKRDDEDERTLGELFYCMIDELADITFSHSLQLITKAMVASVEKVFHASEAQIAEFTA DFINRLPKYMQKLLKKTSKNSIEAQS Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:21 2011 Seq name: gi|256541318|gb|ACPV01000156.1| Lactobacillus crispatus 125-2-CHN cont1.156, whole genome shotgun sequence Length of sequence - 1416 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1154 654 ## COG3547 Transposase and inactivated derivatives - Prom 1335 - 1394 8.0 Predicted protein(s) >gi|256541318|gb|ACPV01000156.1| GENE 1 2 - 1154 654 384 aa, chain - ## HITS:1 COG:SPy0732 KEGG:ns NR:ns ## COG: SPy0732 COG3547 # Protein_GI_number: 15674786 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 199 384 11 194 196 148 44.0 2e-35 MQVTFGIDVSKSTSTVCELIGESKNELTITNNRPGFIQLLHELTAFSKHPQIIFEATGVY SRRLQAFLEDYGYEYVVINPLKAKKEMNMGLRYNKTDKTDAYHLALIQRLYRHPVNQSES QTYKQLNALSRFYDQLTSDLVIAKNRLHQALQSTFPEIENLFSSARGKNYWQIVVRYPHC DLVRREDKKQLINWLMSLKGIAFKHALRTADKLIELAYQAYPVVSCSSIEVEQVQYYAHR LLNLSDQRENLIARMVKLAKSLPNHDLENLESIPGFAQTTAVRVLAELGDLRRFSNPNKI NAFIGIDPGRYQSGEMDSNLSITKHGNAVARKLLYRAIGQIDNAAKTNPCHIADYYESKK LSSQTKGFKKIAIASIHKLIRTIY Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:22 2011 Seq name: gi|256541317|gb|ACPV01000157.1| Lactobacillus crispatus 125-2-CHN cont1.157, whole genome shotgun sequence Length of sequence - 1411 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 4 - 1383 771 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|256541317|gb|ACPV01000157.1| GENE 1 4 - 1383 771 459 aa, chain + ## HITS:1 COG:yi5B KEGG:ns NR:ns ## COG: yi5B COG2801 # Protein_GI_number: 16131429 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 165 452 2 277 283 240 46.0 4e-63 MSKFNKEQKIEIYHKWKDENISISQLAKAYRMNLANLDYMLRLIDMHGIEILTTKNQSYS KEFKQRTIEQAIFGNKPYLQLSLELGFKSIGMLNNWIREYKKNGYNVIIKQKGRPARDQR KAEISQGTGERDPAAERRKLAIAYCERIRKKTKCLGSRRSEEIARVITDLRQEFKVSLNY VLAAIAEHPELPIIARSSYYKIIKRQPVKPKRSKLIARIHEIFNHHQGRYGYRRVALQLI REGWKVTEKTVRYWMHKLGLKGIRRNKRKYSSYKGTIGKIAPNLIHRDFFAALPNTKWYT DITEFHLNNEKLYLSPILDGCGGDIVSYTISKHPDMDLVMTMLDKAFAKETALNNCIFHT DQGCQYQSPRYQRALKLHGITQSMSRKGNSMDDGLMENFFGLLKTEMFYDQEYKYHNLQE LTQAIEEYIEYYNNERIKSRLKGLTPKEYRSQASINPIF Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:23 2011 Seq name: gi|256541316|gb|ACPV01000158.1| Lactobacillus crispatus 125-2-CHN cont1.158, whole genome shotgun sequence Length of sequence - 1156 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 33 - 728 234 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase 2 1 Op 2 . - CDS 595 - 1059 198 ## LCRIS_01598 transposase - Prom 1087 - 1146 1.5 Predicted protein(s) >gi|256541316|gb|ACPV01000158.1| GENE 1 33 - 728 234 231 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 35 223 133 312 317 94 34 3e-20 MPLALMNSLVNFTGLCQIIHVLARPLSIVILIKDISNIDLPMKLKRRRNKRHHSHGGHAP HKKNLGNSIEQRPKEVENRKVPLHWEGDLVKGVRRKNQPALMTLTERTTRFEVVIKIPDY RASTCQRLLQKEIDRHPNWFKSITFDNGSEFADMTKIKGCQIYFAHPYSPWERGTNENCN GLLRQFFPKGKSMKDKSAAYVQQATDAINRKHRRILQYHTAEELFKQYVPS >gi|256541316|gb|ACPV01000158.1| GENE 2 595 - 1059 198 154 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01598 NR:ns ## KEGG: LCRIS_01598 # Name: not_defined # Def: transposase # Organism: L.crispatus # Pathway: not_defined # 1 144 1 144 344 279 99.0 2e-74 MTNSNSSISKHYHQLNSEQRGQIQALLDSGITSCNAIAQEVGCHKSTISREIRRGSVLQR DSSYVLYEHYYADTAQIYHEKRRRNCYKRNPLQHYAVFFRMLSRRFKAKFDATSIDEFVG EFHRIMPNYPCPSTPTVYRYIDQGYKQYRPANEA Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:26 2011 Seq name: gi|256541315|gb|ACPV01000159.1| Lactobacillus crispatus 125-2-CHN cont1.159, whole genome shotgun sequence Length of sequence - 1030 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 132 - 1022 191 ## lhv_0676 transposase Predicted protein(s) >gi|256541315|gb|ACPV01000159.1| GENE 1 132 - 1022 191 296 aa, chain - ## HITS:1 COG:no KEGG:lhv_0676 NR:ns ## KEGG: lhv_0676 # Name: not_defined # Def: transposase # Organism: L.helveticus # Pathway: not_defined # 103 296 1 194 194 355 87.0 1e-96 MVIQPRQKMDEREAALTMLKKLAQQEKDFLVLMDRGYISFNLIENCNRLKHCHYVMRSKS GDGAFKEIVAMSNHEYDIDLSCRVTSSHYYYVTHKDTEKFLHLILHKKHHYKAVRSKNTR DQRWDFEDMCDVRFRVCKFRINPPGSDDEWEVLITNLYRNEYPLARMKEIYHLRWGIETS FRELKYDLSGIQFHSKKDQFVYMEIYAHFAMYNAVSLSIIASSKPYTQGKYQYQIDFKMA CCIWRRYFSISDNSDKNFTQLLLDVAFYLTPIRPGRKDKRNLKVKLVVGFPYRLAA Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:30 2011 Seq name: gi|256541314|gb|ACPV01000160.1| Lactobacillus crispatus 125-2-CHN cont1.160, whole genome shotgun sequence Length of sequence - 992 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 991 1127 ## LBA0169 S-layer Predicted protein(s) >gi|256541314|gb|ACPV01000160.1| GENE 1 1 - 991 1127 330 aa, chain + ## HITS:1 COG:no KEGG:LBA0169 NR:ns ## KEGG: LBA0169 # Name: slpA # Def: S-layer # Organism: L.acidophilus # Pathway: not_defined # 5 329 28 355 444 176 48.0 8e-43 VATTTNTANTVINAGGTAINTPADAKYDVDVTPNLTATAASTVNGQTINGSITGNITASY NGQSYTGTLDTKNGKVSVADSKGTAVTDFSKLTNGSYTVTVSGVSFNFGTANANKTITLG SKNSNVKFAGADGKFADTVKVELGQNGTLTTPISVQVSNVNALDLSNANGVNFYNASNGS QVTKGSVNVTAGLNGRLNVSTVASEILKNFAAYQVSNGKPVSQLPDQKAVVADVNAALKA ANISVDNAGWFTAPTSFSVNVKATSSINGVDATLPVTVNVANGKDMTVPSQSKTIMHNAY YYDKDAKRVGTDKLTRYNSVTVAMNTTTIK Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:35 2011 Seq name: gi|256541313|gb|ACPV01000161.1| Lactobacillus crispatus 125-2-CHN cont1.161, whole genome shotgun sequence Length of sequence - 969 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 2 - 61 3.6 1 1 Tu 1 . + CDS 100 - 957 413 ## FI9785_169 putative transposase Predicted protein(s) >gi|256541313|gb|ACPV01000161.1| GENE 1 100 - 957 413 285 aa, chain + ## HITS:1 COG:no KEGG:FI9785_169 NR:ns ## KEGG: FI9785_169 # Name: not_defined # Def: putative transposase # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 285 1 285 285 547 92.0 1e-154 MNYLKLNRFSHHLQVSFNRLNVICRSLYKLYAPDGLKHRKNVDQTKLPDSSILAMLIWQT EIGIESQRRFCKFFVGLSHSRFNRRARMLLPLIRCIRQGWNQEVKVGGELLIIDSFPIPV CQPVRNYHVKIFRGIADIGYKATKKIYYYGFKVHAIVSDDGYLLDYAVTKASVHDAKETV ELMINAHPINHYLLGDEGYLGKDLAAKLKRMGYVLWTPYRKNMRGAKKHNDHQLMAIRRT IESDFSLLSYYNAENNRARSLVGFQQRLEIAILAYNMAYCLERFN Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:40 2011 Seq name: gi|256541312|gb|ACPV01000162.1| Lactobacillus crispatus 125-2-CHN cont1.162, whole genome shotgun sequence Length of sequence - 954 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 45 - 953 431 ## lhv_0684 hypothetical protein Predicted protein(s) >gi|256541312|gb|ACPV01000162.1| GENE 1 45 - 953 431 302 aa, chain - ## HITS:1 COG:no KEGG:lhv_0684 NR:ns ## KEGG: lhv_0684 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 2 301 168 467 468 456 76.0 1e-127 TKKKVPVLYLEGDGVVIKGTKSRLEFHRYQVCEGIVNISKKRRKRINAKEFVSLSRLDAL NEAKEYLANTYDLSDTVILSNADGGAGYAKTDFDDIVGLCKRHEHFLDVFHLNKKIKERL YFAPDLQGKLISALEYKYSYDKVKTILTTAESRLIDELNTELNHDYLGRLRNYIDRHWDD IKPFKKRKLTVTKAIGCCESNHRKYTYRVKGQGKKWSKSGAEGMLRILSCIKNRELEFWL SSEFEDSEITVLTEQELKAAARDSLKKRHEVHLGIQHGALTAQVAGNSYLSKLSRNLSHI NI Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:44 2011 Seq name: gi|256541311|gb|ACPV01000163.1| Lactobacillus crispatus 125-2-CHN cont1.163, whole genome shotgun sequence Length of sequence - 807 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 807 323 ## lhv_0675 transposase Predicted protein(s) >gi|256541311|gb|ACPV01000163.1| GENE 1 3 - 807 323 268 aa, chain - ## HITS:1 COG:no KEGG:lhv_0675 NR:ns ## KEGG: lhv_0675 # Name: not_defined # Def: transposase # Organism: L.helveticus # Pathway: not_defined # 21 161 11 151 151 181 61.0 2e-44 ELSPACFKHILTVFNQNLFNIQLFDHKYRIFAIDGSDFNQIWNPKSENIVGNLNHKGKPY CQIHVNALYDLLNNTYQDCIFQPKSKMDERKAAIQMLKKLNCGPYIVTMDRGYTGFNMIE NCNRLPNCYYVIRTKTGYGAFKEVAELPNQECDKDIACWVTTSNYYYETHKATENVHLVN HHYRQYIKYRSKNTKDGSWDFGELCTIKFRACKFRINDPKSGKEEWEVVLTNLNRADYPL KRIKEIYHLRWGIETSFKKLKYALGSVQ Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:49 2011 Seq name: gi|256541310|gb|ACPV01000164.1| Lactobacillus crispatus 125-2-CHN cont1.164, whole genome shotgun sequence Length of sequence - 780 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 - CDS 1 - 178 61 ## COG3328 Transposase and inactivated derivatives 2 1 Op 2 . - CDS 219 - 779 271 ## COG3328 Transposase and inactivated derivatives Predicted protein(s) >gi|256541310|gb|ACPV01000164.1| GENE 1 1 - 178 61 59 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 57 210 266 391 58 38.0 2e-09 MLQDMKSRGLEQVELFLSDGVVGMKTVLEKTYPKAHFQRCLVHVMRNICAKVRVDDREN >gi|256541310|gb|ACPV01000164.1| GENE 2 219 - 779 271 186 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 3 185 12 194 391 202 50.0 3e-52 QALFNQDKINDLLRKELQQAVNDLLEAELTAFLGYDPYARAGWNTGNSRNGAYFRKVDTQ FGEIEIQVPRDRNGMFHQHTLPDYRQHSDVLESMIIKLYSKGVTTREIADLIEKMYGSHY SPAQVSNISKQMIPKVEAYHQRKLSDKFFCIYLDATYITLRRITFDREAVYIAIGIKPNG HKEVID Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:49 2011 Seq name: gi|256541309|gb|ACPV01000165.1| Lactobacillus crispatus 125-2-CHN cont1.165, whole genome shotgun sequence Length of sequence - 634 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 36 - 95 10.0 1 1 Tu 1 . + CDS 201 - 633 251 ## lhv_2508 putative transposase Predicted protein(s) >gi|256541309|gb|ACPV01000165.1| GENE 1 201 - 633 251 144 aa, chain + ## HITS:1 COG:no KEGG:lhv_2508 NR:ns ## KEGG: lhv_2508 # Name: not_defined # Def: putative transposase # Organism: L.helveticus # Pathway: not_defined # 1 139 12 150 150 248 90.0 6e-65 MDSIINKIADNIHDFSVSDQAFTRCRKLNSTDLIKLILNMGAGSLNSEIFHAFPDINSRM TASAFEQQKAKLKPECFKEIMLELSRANNVLQLLDNQYLVVAIDGSDFDQPFNPESENIF RGKDGRIYCQLHVNALYDVLNKLY Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:52 2011 Seq name: gi|256541308|gb|ACPV01000166.1| Lactobacillus crispatus 125-2-CHN cont1.166, whole genome shotgun sequence Length of sequence - 562 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 520 292 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|256541308|gb|ACPV01000166.1| GENE 1 2 - 520 292 173 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 170 154 312 317 117 43 2e-27 NKKKLGRSIEERPKEINKRNEFGHWECDLVLGHKSKDDEVLLTLSERMSREFLILRIPDK TSVSVMQAFKELQRQYSEHWNDIFKTITTDNGSEFADLSSLEDVSNTLVYYAHPYTSCDK GTVERHNGLIRRFIPKGEAIDNYSLQDIIDIETWCNSLPRKILAYHTPDEIFE Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:53 2011 Seq name: gi|256541307|gb|ACPV01000167.1| Lactobacillus crispatus 125-2-CHN cont1.167, whole genome shotgun sequence Length of sequence - 559 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 456 80 ## LJ0275 transposase - Prom 484 - 543 4.1 Predicted protein(s) >gi|256541307|gb|ACPV01000167.1| GENE 1 3 - 456 80 151 aa, chain - ## HITS:1 COG:no KEGG:LJ0275 NR:ns ## KEGG: LJ0275 # Name: not_defined # Def: transposase # Organism: L.johnsonii # Pathway: not_defined # 1 151 1 151 349 231 73.0 5e-60 MDSLHFIMDKRKKGTHLSLEERVIIQTRLKDHCSLRSIAREIGCSPSTIHYEIKRGTVKL YHGNIKRYKAQQGQSVYQNHRQHCGRKSDFLKKHKFIDYVQRHFFEDGWSLDVCSNRCTA VGEFASSDIVCTRTLYNYVDQGLLDIHNYDL Prediction of potential genes in microbial genomes Time: Wed May 25 06:03:56 2011 Seq name: gi|256541306|gb|ACPV01000168.1| Lactobacillus crispatus 125-2-CHN cont1.168, whole genome shotgun sequence Length of sequence - 555 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 337 211 ## gi|256844806|ref|ZP_05550268.1| hypothetical protein HMPREF5045_02080 - Prom 487 - 546 6.8 Predicted protein(s) >gi|256541306|gb|ACPV01000168.1| GENE 1 1 - 337 211 112 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256844806|ref|ZP_05550268.1| ## NR: gi|256844806|ref|ZP_05550268.1| hypothetical protein HMPREF5045_02080 [Lactobacillus crispatus 125-2-CHN] # 1 112 13 124 124 211 100.0 1e-53 MQKKEKNIDDRYVYGILVSLFCLGFGILIGAMINANGEVLGSVAEWIGGFGTIAAVIAGF AQVKNQNKIKKANDIEEKRPRFDVKSASTIKNYKEIVTLACKHDTQIVKKVL Prediction of potential genes in microbial genomes Time: Wed May 25 06:04:02 2011 Seq name: gi|256541305|gb|ACPV01000169.1| Lactobacillus crispatus 125-2-CHN cont1.169, whole genome shotgun sequence Length of sequence - 552 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 76 - 550 99 ## LCRIS_00916 transposase Predicted protein(s) >gi|256541305|gb|ACPV01000169.1| GENE 1 76 - 550 99 158 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00916 NR:ns ## KEGG: LCRIS_00916 # Name: not_defined # Def: transposase # Organism: L.crispatus # Pathway: not_defined # 1 158 1 158 162 324 100.0 5e-88 MNYLKLKRFSHHLQVSFNRLNVICRSLYKLYAPDGLKHRKNVDQTKLPDSSILAMLIWQT EIGIESQRRFCKFFVGLSHSRFNRRARMLLPLIRCIRQAWNQEVKTAGEFLIIDSFPVPV CQPVCNYRVKIFRGVADIGYKATKKVYYYGFKVHAIVS Prediction of potential genes in microbial genomes Time: Wed May 25 06:04:05 2011 Seq name: gi|256541304|gb|ACPV01000170.1| Lactobacillus crispatus 125-2-CHN cont1.170, whole genome shotgun sequence Length of sequence - 539 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 142 - 513 137 ## COG3328 Transposase and inactivated derivatives Predicted protein(s) >gi|256541304|gb|ACPV01000170.1| GENE 1 142 - 513 137 123 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 123 270 391 391 99 43.0 2e-21 MNEFKQIHQQTSQKEAAAVLHEFYAKWNKAYSHVIKGLREIEPDLLVFYNYPKQIRASIY STNMIESFNNVIKRKAKPKAEFPTEQSLDVFIGIQAMSYNDRYFNRIHKGFGQVQDTLES YFD Prediction of potential genes in microbial genomes Time: Wed May 25 06:04:06 2011 Seq name: gi|256541303|gb|ACPV01000171.1| Lactobacillus crispatus 125-2-CHN cont1.171, whole genome shotgun sequence Length of sequence - 507 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 489 222 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|256541303|gb|ACPV01000171.1| GENE 1 1 - 489 222 163 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 4 159 156 307 317 90 37 2e-19 MHKKNLGNSIEQRPKEIEDRKTPLHWEGDLVKGVRRKNQPALMTLTERTTRFEVVIKIPD YRASTCQRLLQNEIDRHPAWFKSITFDNGSEFADMTKIKGCQIYFAHPYSPWERGTNENC NGLLRQFFPKGKSMKDKSAAYVQQATDAINRKHRRILQYHTAE