Prediction of potential genes in microbial genomes Time: Wed May 25 06:04:17 2011 Seq name: gi|227863492|gb|ACKR01000001.1| Lactobacillus crispatus JV-V01 contig00001, whole genome shotgun sequence Length of sequence - 11568 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 3, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 959 - 1033 64.4 # Glu TTC 0 0 + TRNA 1036 - 1108 86.4 # Val TAC 0 0 + Prom 960 - 1019 77.8 2 2 Op 1 4/0.000 + CDS 1266 - 2465 1624 ## COG0192 S-adenosylmethionine synthetase 3 2 Op 2 . + CDS 2490 - 3950 1385 ## COG0477 Permeases of the major facilitator superfamily + Term 3958 - 3999 6.3 + Prom 4057 - 4116 9.8 4 3 Op 1 9/0.000 + CDS 4179 - 6149 2069 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 5 3 Op 2 . + CDS 6173 - 7069 1111 ## COG2103 Predicted sugar phosphate isomerase 6 3 Op 3 . + CDS 7141 - 9132 1982 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 7 3 Op 4 . + CDS 9193 - 10230 811 ## COG3589 Uncharacterized conserved protein 8 3 Op 5 . + CDS 10246 - 11091 531 ## COG1737 Transcriptional regulators + Term 11165 - 11210 3.0 Predicted protein(s) >gi|227863492|gb|ACKR01000001.1| GENE 1 1 - 807 808 268 aa, chain + ## HITS:1 COG:ML0337 KEGG:ns NR:ns ## COG: ML0337 COG0803 # Protein_GI_number: 15827093 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Mycobacterium leprae # 11 263 33 292 302 114 29.0 3e-25 LENTAKHRVNIVTSTNIYADIAKNIVGKHGHVQAIIKNGDTDPHDFEPTTGSAKEVANAN IVIANGLGYDDWMTNLANANDIHVVKVGNQLMGLKQGDNPHIWYNLNMPKKYVDYLVKTA SKIDPKHAAYFKSNAASYLQKIDSIKKIAAKINGREDKPVYVSEPVFDYALERCHFKIGN QAFEEAVENETDPSAQVIHEMQVKIKARKIAFFVNNIQASSSTVSGMVKLAEQHNIPVLD VRETMPNGISYYYWMKANYQKLFEIFLK >gi|227863492|gb|ACKR01000001.1| GENE 2 1266 - 2465 1624 399 aa, chain + ## HITS:1 COG:BS_metK KEGG:ns NR:ns ## COG: BS_metK COG0192 # Protein_GI_number: 16080107 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Bacillus subtilis # 3 391 5 393 400 553 70.0 1e-157 MERRLFTSESVSEGHPDKVADQISDAILDAMLKKDPNSHVACETIVTTGMVFVFGEISTN AYVDIQDVVRKTILKIGYDRPELGFDGNNCAVMVDIDEQSPDIAGGVDHSLETRENKSDN DELDQIGAGDQGLMFGFAIKETPELMPLPISFAHRLMRRVAALRKDHTLDWLRPDAKAQV TVEYDENNKPLRVDTIVISTQTDAEVSNEEIHRAMIDLVIKEVIPAKYLDEKTKFLINPS GRFVIGGPKGDSGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSASYAARYVAKNIVA AGLAYRCEVQLAYAIGVAHPVSIMIDTAGTGKVDDELLTEAVRNVFDLRPAGIIKMLNLR RPIYEQTAAYGHFGRTDVDLPWEKTDKTQDLLDYIKDHQ >gi|227863492|gb|ACKR01000001.1| GENE 3 2490 - 3950 1385 486 aa, chain + ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 1 471 1 475 491 347 44.0 2e-95 MKKTNVPVVTLAIFMTTFMTAIEGTIVSTAMPTIVSDLDGLEIMNWVVSIFLLMTAVSTP LYGKLADSIGRKPVFLFGIALFVIGSSLCGLAQNMVELILFRVIQGLGSGAAQPVAITII ADLYTLQKRAKMLGLSSGFWGVASVIAPLLGGFIVQHLSWHWVFYINVPIGIIAFLLVLV YLREPKHRSSSKLDLQGTIWLVLLLFALMFFLQDLGSSMNLLVMATLAVLIVISVILFFR AEKRAADPIMPLSMLKDKEFFALNIITLLIFGVVIGFEFYIPTWMQGINGTNASLAGFAV TPSSLMWIVGSFLIGGMLGRWGIKKTYDYMLLVLVVADLVLILVPIYTSFWVFCVIAAFN GTAFGAITTASQVRSQVLVPKDDIGVATSFNTLMKYLGQTMMVSIYGIAFNTMLAHGLSK RPGLNQEMMNKIVSAENAKSLAANVVPQLRQVLLGGLKAVYVVSMIVIVVSIVLNQLYRD RKLKKN >gi|227863492|gb|ACKR01000001.1| GENE 4 4179 - 6149 2069 656 aa, chain + ## HITS:1 COG:L145238_2 KEGG:ns NR:ns ## COG: L145238_2 COG1263 # Protein_GI_number: 15673113 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Lactococcus lactis # 118 455 10 348 348 388 62.0 1e-107 MADKYSELGREIYANIGGPNNVKSMYHCMTRLRIKIRDNSKVDIQGLKDIDGVLGVVNAD TLEIVLGSGVNAKVAQDMVSQVGVKENEEFPTSTYQSEKSEVQAKAAEVHAQHKAQLKQT WWRKALGRISAIFIPLIPAFIGAGLISGVAGILRNMLTAKMLPGSWNLGVTILSMIASAL FAYLNIYVGINTAKEFGATPALGGIIGGVVLLPGIAAPVTIPNVLDGKPLAAGQGGIIGV LLAVWLLAYVEKWFHKHIPDSVDIIFTPFFTVLIMGLFTVFAIMPIAGWISNSLVGGINW VLDVGGPVAGFILGLFFLPMVMLGLHQILTPIHLSMIQKMGYTPLLPILAMAGAGQVGAA IALWAKCRKNKDLVRLIKGALPVGILGVGEPLIYGVTLPLGRPFITACVGGGIGGAVVAA FGHVGSIAIGPSGVALIPLIANNMWWAYCIGLLSAYAGGFVATYFWGVPKDAIKGKVENP TPEVSERRAAEKHADNLNMPSEKAEISFEAPVSGELEKIEEVKDDVFSQKMLGDGFAIDP SNGTVVAPVDGKIDTVMNTKHAITLKTSKGNLDVLMHLGLDTVELKGAPFEIDVKPGDLV NAGEKIGTMDIAAIKKAGKDPVVLTIIANMDHIDQVSKVEDSPVKAGQVVFKAMTK >gi|227863492|gb|ACKR01000001.1| GENE 5 6173 - 7069 1111 298 aa, chain + ## HITS:1 COG:YPO2925 KEGG:ns NR:ns ## COG: YPO2925 COG2103 # Protein_GI_number: 16123112 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Yersinia pestis # 1 295 1 295 295 276 52.0 4e-74 MSLENLTTEQRNKNTMHIDSMSTLDMVKTINEEDKKVAEAVGTQDEEIAQAIDIGSARYQ QGGRLIYIGAGTSGRLGVLDAAELVPTYGIKPERAIGLIAGGKGAMYVAVEGAEDDPKLA AEDLKKLDLSEKDVVIGLAASGRTPYVIGGLDYAQKVGAATIAIACVKHSLIGQHANIAI EAVTGAEVITGSTRMKAGTAQKMILNMISTGIMIRQGKVYQNVMIDVLPTNEKLVERAER IIQTTTNVSLEKAAKILRDADKDVGLAIVMAKTGLKKNDAQLLLKEHQNNVSSVLKEE >gi|227863492|gb|ACKR01000001.1| GENE 6 7141 - 9132 1982 663 aa, chain + ## HITS:1 COG:yfeW KEGG:ns NR:ns ## COG: yfeW COG1680 # Protein_GI_number: 16130355 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Escherichia coli K12 # 153 580 51 462 463 378 45.0 1e-104 MNSKKLITGSCTVALSVMMLASTVTYAPISNSQVYASVVKQKQEPTGQYQINDSFPIDEK NDNPKFDTWSLLDNINRKFYGFKGQGSVWVHSNNAKNFELYINGKNVSLKNISSNKWVKI DISKFTKNGNNALQISPKKGVRASDKFDIKLPYPTLVDKTKEYRNNDTFKTMDALINSEI KNGFPSAELVVVHNGQIIKRSAYGRVNAYFQNGKRRVNAPKVTNTTMYDLASNTKMWATN MAIQKLVSEKKLNIDAKVSSIFPDFKDNANDKIKGKTDLTVRDILMHQAGFPADPQYHNN NYNPDKPNERKKNANPVYTQNRDEVLKKIIATPLQYAPGTKTIYSDVDYMLLGLIIEKVT GQREDNYVENNIYKPLGLRHLMYNPLDKGVSKNKIAATELNGNTRDGQIDFNNIRHYTLQ GQVHDEKAYYTMHGVSGHAGLFGDASDLAVLAQMVINRGGYGNHRIFDEDTLDEFIKPKS TNYSYGLGWRREASTTYSGNYGWAFSGLSDASTIGHTGWTGTLTVVDPHDNTAVILLTNE RNTPILKPETTATANDFAGGHYLLSKYGDIASLAFAAINKDNSSANNAKLISLTMQRFNE IQKNKDDQTNADKADLCGIYDALKMRSKKHNSVARFLATTKGKQITAYVKANKNAVNNVR NSH >gi|227863492|gb|ACKR01000001.1| GENE 7 9193 - 10230 811 345 aa, chain + ## HITS:1 COG:L143292 KEGG:ns NR:ns ## COG: L143292 COG3589 # Protein_GI_number: 15673111 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 338 1 343 353 166 32.0 6e-41 MLGISVYFQDYDENYLKKAAQAGAKYVFTSLQIPEEDYSDLDQKLPGFFELCNELGLEVI PDVSPATLEKLGIKEGDFEALKDKGFKALRLDYGFDNFDLIKKLQKKFFILLNASVVSLD YLDRARNAGVDFNKLALTYNFYPHTDTGMGWSDFKRKNWMLKDYGLRTQAFVPGDALKRF PLYEGLPTVEKHRGVSPYVAAVELIHEANVDDVFIGDSQASIKNLQYIVDYQKEKTLNLE CSLLPQYQQLYDQVIEVRKDMPEKLIRLSLSRKPDIPVCNTLNRHRGTITMQNKLAQRYS GEVSLIKSNLHFEARSNVIGFISPEYVKLLDFIDSNTKIIFRRLT >gi|227863492|gb|ACKR01000001.1| GENE 8 10246 - 11091 531 281 aa, chain + ## HITS:1 COG:HI0143 KEGG:ns NR:ns ## COG: HI0143 COG1737 # Protein_GI_number: 16272110 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Haemophilus influenzae # 3 277 6 280 288 129 30.0 7e-30 MLNLANKISDVYPNLNKTSKLIADVYFKEPRIFLNKNLQELGTITQTSGASVVRFCRNLG FKGFKDFQIACAQEMPNKQDAMVDTIINTNDEPTSVLYKLQLSLGKNIADIGKTIDHKSL DAAVDLMRSAQQIYVAGEGASGLAAQDLFYKLIRSGKNVNFVQSSHIALEQVANINKEDI LIVFSYSGLTQEPLLMAKQAQKNNAKIVAVTRIQDSPLKNMADTVITLPSNEKLLRYGAI NSLFAEIFASSLLYLSLISPNLEELNMKMKTTQNLTNQLKV Prediction of potential genes in microbial genomes Time: Wed May 25 06:04:25 2011 Seq name: gi|227863469|gb|ACKR01000002.1| Lactobacillus crispatus JV-V01 contig00002, whole genome shotgun sequence Length of sequence - 24518 bp Number of predicted genes - 20, with homology - 20 Number of transcription units - 11, operones - 6 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 31/0.000 + CDS 1 - 1278 1377 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 2 1 Op 2 5/0.000 + CDS 1280 - 2296 1074 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 3 1 Op 3 14/0.000 + CDS 2296 - 4014 192 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 4 1 Op 4 . + CDS 4004 - 5752 189 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 5 1 Op 5 . + CDS 5762 - 6463 376 ## PROTEIN SUPPORTED gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 + Term 6513 - 6572 6.0 - Term 6364 - 6408 7.1 6 2 Tu 1 . - CDS 6460 - 7449 964 ## COG0142 Geranylgeranyl pyrophosphate synthase - Prom 7470 - 7529 3.5 + Prom 7415 - 7474 6.2 7 3 Op 1 . + CDS 7509 - 8408 857 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase 8 3 Op 2 . + CDS 8423 - 9643 1600 ## COG1252 NADH dehydrogenase, FAD-containing subunit + Term 9736 - 9778 8.0 + Prom 9700 - 9759 5.3 9 4 Tu 1 . + CDS 9880 - 10104 276 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 10123 - 10170 9.3 + Prom 10126 - 10185 6.0 10 5 Op 1 . + CDS 10331 - 11170 776 ## LGAS_0931 hypothetical protein 11 5 Op 2 . + CDS 11230 - 12153 469 ## COG0583 Transcriptional regulator + Term 12161 - 12188 0.1 - Term 12149 - 12176 0.1 12 6 Tu 1 . - CDS 12196 - 12861 482 ## COG0671 Membrane-associated phospholipid phosphatase - Prom 12895 - 12954 6.7 + Prom 12857 - 12916 6.5 13 7 Op 1 . + CDS 13151 - 15565 3325 ## COG0495 Leucyl-tRNA synthetase + Prom 15573 - 15632 3.6 14 7 Op 2 . + CDS 15659 - 17305 1730 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid + Term 17314 - 17359 5.2 - Term 17610 - 17663 5.6 15 8 Tu 1 . - CDS 17693 - 18013 496 ## COG1983 Putative stress-responsive transcriptional regulator - Prom 18060 - 18119 10.7 - TRNA 18148 - 18234 60.3 # Leu CAG 0 0 + Prom 18231 - 18290 8.1 16 9 Op 1 . + CDS 18323 - 19624 1308 ## COG1686 D-alanyl-D-alanine carboxypeptidase 17 9 Op 2 . + CDS 19597 - 20472 383 ## PROTEIN SUPPORTED gi|90022317|ref|YP_528144.1| ribosomal protein S15 + Term 20529 - 20559 1.2 + Prom 20533 - 20592 4.3 18 10 Tu 1 . + CDS 20624 - 21310 740 ## COG1376 Uncharacterized protein conserved in bacteria + Term 21317 - 21347 2.9 + Prom 21433 - 21492 8.9 19 11 Op 1 . + CDS 21674 - 23359 2203 ## COG0018 Arginyl-tRNA synthetase + Prom 23385 - 23444 5.6 20 11 Op 2 . + CDS 23470 - 24381 1187 ## COG0191 Fructose/tagatose bisphosphate aldolase + Term 24402 - 24441 6.1 Predicted protein(s) >gi|227863469|gb|ACKR01000002.1| GENE 1 1 - 1278 1377 425 aa, chain + ## HITS:1 COG:L107726 KEGG:ns NR:ns ## COG: L107726 COG1271 # Protein_GI_number: 15672686 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Lactococcus lactis # 1 422 53 467 491 430 53.0 1e-120 KFWANIFLLSFAVGVVTGIIQEFQFGMNWSDYSRFMGDIFGAPLAFEALLSFFIESTFIG LWMFTWDKVGKKLHLFFGWMIVFGTMTSALWILTANSFMQHPVGFALRNGRAEMADFGAL LKNPQLMYEYGHVIVGALLTGTTILTGLAAFQLLKKRNLSDINKKIYRKTMRLGLILMLI FSAGEIAVGDMQMQYTLHDQPMKFAATEAVYKTTGEKAPWTVVAIANPKTHEVKGIDIPD MLSILSYHKTTGSVKGMEEINKELEKKYGTHIDGRKMDYYVPVNTLFWSFRVMCGFAALL FLMAIVGLIMTRKNKETLYNHRWLLWIFALLTFSPFLANTAGWLITELGRAPWTVYGLFT IDQSVSPNVSVASLLTSNIVYFCLFTILAIIMIALVVRFMHNDPDEYDKAQEASKVVDPF SKGAI >gi|227863469|gb|ACKR01000002.1| GENE 2 1280 - 2296 1074 338 aa, chain + ## HITS:1 COG:L109201 KEGG:ns NR:ns ## COG: L109201 COG1294 # Protein_GI_number: 15672687 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Lactococcus lactis # 1 329 1 329 331 322 56.0 4e-88 MSFLQILWFILIGVLFSGFFFLDGFDFGVGMAVKTLAHNEPERDQVVRTIGPVWDGNEVW LITAGGAMFASFPYWYATLFSGYYLILLLILVGLIIRGVSFEFRAKCAPYQKHIWDNAMA IGSVIATFLFGVMFISMIKGMPIDAKGNISASFFDYFNWFSIVGGIALTLLCYLHGLNYI TIKTKGVISDRAQNYAQALYWVLYVGEVVFALLLIFQTDFMRVHPIATLICLVLIVGFSV AAHVATFINKQGMALACSGLTLISLVALIFCGLFPRVMISSISSKYDLLIHSASSSNYTL IVMTVATCILVPCILAYTIWAYWIFRKRISMPRIGEVK >gi|227863469|gb|ACKR01000002.1| GENE 3 2296 - 4014 192 572 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 330 554 2 229 245 78 27 4e-14 MIDKQLFKIDGAGSILKKLAGLEILQAFFIVGQALALASVLSKLWAGESLDWLLLLTFAA CFIARQLINTLRDSMLEKYSGQVAEELRQKLLDKVFRDGQALVQKQGTGSLITMSLDGVD EVRQYIKLIYSKVLTMMIVPVLIFVGMLFLSWTSAVILLVMYPLIVLFMIILGHAAQDRA IKQFGNFQVLSNNFIDSLRGIDTLKYLGLSKRYSKSIFNLSEGFRKKTMAVLKVAMLSTF ALDFFTTLSIAIIAVFLGFDLMNGKIALFPALGILILAPDYFLPIRDFAGDFHATLNGKN AFKRINELINLPEEKTNDLSLKTWSAQDQLKIKNLKFTYQKGTEIGPVSLQVQGFKKIGI IGMSGSGKTSLINLLSGFLTPDQVQIELQGQKTTTMNIPAWQRQMTYIPQEPYVFTKSLR ENIAFYNPQASDDEIKQAIHIMGLDALLNDLPNGLDTVIGRGKRVLSGGQSQRIALARAF LDPKRKIMIFDEPTAHLDIETEIDLKKRMMPLMQNKLVFFATHRLHWLKEMDYILVMDHG QLVEQGSYEQLQQNQGYFCKLMAGMRGENNDQ >gi|227863469|gb|ACKR01000002.1| GENE 4 4004 - 5752 189 582 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 361 556 21 214 305 77 27 8e-14 MINKIPVLRALKNDRWVRPYLEKYRKTLILAIALGILTFVCGGGLMFCAGYLISRSAAKP ENILLIYVPIVLTRAFGITRPAVRYFERLVSHNWVLKMTSKFRQQLYDSLERDATIFNSK YQLGNILGLLSDDVSHIQNFYLRTIFPMFVSWGLYAIIVIGLGIISPLMGIWMLILFFLI IFAIPIWSVLINGARQSYEKTVQDKLYVDLTDNVMGVDDWILSGRSKEYLALHVNDQDKF LQINAKMKKFDRWRDFVLQIFWVLVIVSLVIWGAARFGGRSTYYTNWIAAFALALFPTVE AFASLPTAAQETNIYKDSLKRLNNLPAPDRTKHKPIKLTAPFNLVLTDVHYAYPQTNKEV LHGINLNIHDGEKIAILGRSGAGKSTLAALLRGDRVPAKGHVTLNGIDTSKFGDQMSNYF SIINQTPYLFNTTIANNLRLGNEDATDEQLWDVLRRVGLAEMVQKLTDGLDTKVDEAGLR FSGGERHRLALARILLKNTPIVLLDEPTVGLDPITEQAVINMFIKELSGKTLIWITHHLQ GIDQMDQVIFIEDGQINMQGTPEKLWQTEPRYRELKKADLGL >gi|227863469|gb|ACKR01000002.1| GENE 5 5762 - 6463 376 233 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 [Kordia algicida OT-1] # 14 232 1 221 221 149 36 2e-35 MLTNKVPEQDVHDLFTRVAPKYDLMNNIVSLGIQKSWRKKFLRQLDLNKNSICLDLCCGS ADSTIDLTKKAKLVTGLDFNQEMLKIAQKKIRQKQLQSKIKLIAGDAMNLPFAANSFDCV TICFGLRNVPDAVKTIQESYRVLKPGGQFAVLEMSQPTNALVKLGWQAYFKIFPYFAKLT HGNIKDYQYLSKTSKEFLSAEQLKKLLEQNGFTRVAVTKLTYGAGAIHLGRKD >gi|227863469|gb|ACKR01000002.1| GENE 6 6460 - 7449 964 329 aa, chain - ## HITS:1 COG:L186258 KEGG:ns NR:ns ## COG: L186258 COG0142 # Protein_GI_number: 15672163 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Lactococcus lactis # 7 327 5 324 326 214 36.0 2e-55 MNNSQPWQKYPLIRKPLEEVNQLIQATIRTPYSDLQDALLEMASNGGKYLRPSLLILSAQ IASKKETVSKQIIQLASSIEILHMASLIHDDIIDDSDERRGKISIQARFGKDTAVYAGDL LFTHFFDLILNAISEQDYMIKNAHTMHHLLAGELGQMAERFNLSQDFNDYLTNVKGKTAA LFRLAAEEGSHFGNGDEQTTQALASFGENLGIAFQIVDDILDYTGGKQLNKPTLEDLTTG VYSLPILLALSKKELREQLVPLLEKKRQMSKNDIEQIQKILLNSSVIEETHALAEQYTNR ALANLAQLPQTNATVLLKKMTRKLVNRTL >gi|227863469|gb|ACKR01000002.1| GENE 7 7509 - 8408 857 299 aa, chain + ## HITS:1 COG:L187450 KEGG:ns NR:ns ## COG: L187450 COG1575 # Protein_GI_number: 15672164 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Lactococcus lactis # 1 298 1 299 301 247 46.0 2e-65 MSLSVFLELIEIKAKTASVIPFFLGMCYSVYYYHQVNWGFALVFFIAMLLFNMVVDMFDN YCDYYHADSKNYQEKTNIIGRENISPNLVLGLIISFSLIAILLGLYLVAKVGLPVLWMGL FCFMVGYLYSFGPHPISSLPLGELFSGFTMGFMIVLLSVYINSFQVFAWNWATIGRIFLL ALADELWISNLMLANNLCDAQEDEDNHRTTIIHFIGKKGGLIAFSVKNVLAFLVIFLLPF LGIAPKTVWLTVIIVPFVYKQNKILIGKQVKTETFITGVKTLLVGSLTYLITYFLGILF >gi|227863469|gb|ACKR01000002.1| GENE 8 8423 - 9643 1600 406 aa, chain + ## HITS:1 COG:lin2488 KEGG:ns NR:ns ## COG: lin2488 COG1252 # Protein_GI_number: 16801550 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Listeria innocua # 4 405 6 402 403 266 35.0 7e-71 MKTVVVLGAGFAGLKTVVALQKKLREQVKIILVDRNPYHYETIRLYEVATGEIPYTGMSY EINDVINPKMTTVITDEVEKVNIADKTVELKDHAPLKYDYCVVGLGFTLSNMGIKGATEN ALPMSNVKQAEAIRDHLYAEMKAYRQDHDSKHLSVVICGAGFQAIELGNAIAKVRPELAQ MAGAQPDEITIRMIDGSPRLLPMFQGKLLDYALNTIKKNKVEIIKPAYVNEVTSTSVLYK MANEKDNAELQEIKAGTRIWMMGFSGSPVIEASGFKNRRGRVMVGDHLTAPESDDIYVLG DVSSVMVPGKKWPYPNTGQLALSMANYAAKDIKSRIMGQTRPDNYAYHDLGVVVNLGNSE AAGLAMGHAFKGYFAATLKKITIDKSVLETGGIKETMAIGQFDFYH >gi|227863469|gb|ACKR01000002.1| GENE 9 9880 - 10104 276 74 aa, chain + ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 1 60 442 501 506 64 53.0 4e-11 MGGLVIDTKAHVLNKDGQIIAGLYSAGENAGGIHAGNRLGGNSLADIFTFGRIAANTAYE DKHVTDVITGASQK >gi|227863469|gb|ACKR01000002.1| GENE 10 10331 - 11170 776 279 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0931 NR:ns ## KEGG: LGAS_0931 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 277 1 277 277 342 63.0 1e-92 MSKEKELNVSEALGFTDDLMFQIVMRDPEICRMFLNEVLPHLDIQDITVRTQERIAFNQE DKVSILDVLITDSRGRRYNVEMQVAHKADMDKRARQYLFKMMEDGFLRRKQEYGELHAAY VIFILPFDPKGKGLKRYTFVYTAKEDPSVELNDDSALIYLNTKGTKGEIRPELDDLYRMI EGKPTSNGKLVSRIKKSMNNYRRTEEWRQHVMNTEEVAEAAKQLGMEEGMHEATVAAIHK TINMLRRMKCSPKQILQELEQDYGNEFSEEELADFVKNA >gi|227863469|gb|ACKR01000002.1| GENE 11 11230 - 12153 469 307 aa, chain + ## HITS:1 COG:BS_yybE KEGG:ns NR:ns ## COG: BS_yybE COG0583 # Protein_GI_number: 16081119 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 21 249 5 225 278 105 29.0 1e-22 MNNPEELQHFLDVLLKESNFTRAAKELYISQPYLTQLIGRIEKKLGTKIINRDERPYTLT PAGLIYYQYLENVSYNKQQLGRKLEAYTHPDQQIIKIGILESLGTYLLPEILPQFLQENP NVKIQLFENFPRENERRLLNGELDCYIGQTPEALDSSLDVVVGGEERYYVVISPASPYYQ AGKFILNSDELDLKEVLQEPLVLSSPGSAIRHQVNGLFQRLRLEKNIVMESNSIITATNL AIHGVGITISSASIIRRMEQTPINLLPLDRKLMDVVFFIASKSGEKSPALENLISIFQKT HLQAKIG >gi|227863469|gb|ACKR01000002.1| GENE 12 12196 - 12861 482 221 aa, chain - ## HITS:1 COG:lin2125 KEGG:ns NR:ns ## COG: lin2125 COG0671 # Protein_GI_number: 16801191 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Listeria innocua # 3 205 4 210 231 95 31.0 5e-20 MINTKRPPKDTLIPGICFVVIYAVWAALVSSGSQFIHNFDNAVINIVCNNNPANVAFAKD FTNLGNTSVITIETIIVFIVLLIFKQYAYAWFTAGVMICANGYNWIIKHAVMRQRPTVKH LVYADGYSFPSGHSVGSAALFGVLIILTILLVRSKFWKTLLIIIWALFPLMIGYTRIFVH VHYPSDVFGGWIEGITFVLLGYSFLYHFYIEPKMIDMKRKQ >gi|227863469|gb|ACKR01000002.1| GENE 13 13151 - 15565 3325 804 aa, chain + ## HITS:1 COG:lin1769 KEGG:ns NR:ns ## COG: lin1769 COG0495 # Protein_GI_number: 16800837 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Listeria innocua # 2 803 3 802 803 1165 67.0 0 MYNHKVVEKKWQDYWAKHDTFKTGTDPDKKNYYALDMFPFPSGKGLHVGHPEGYTATDIV SRMKRAQGYNVLHPMGWDAFGLPTEQYALKTGEDPEVVTKNNIANFKRQLNKLGFSYDWD REVTTSDPNYYKWTQWVFEQMYKKGLAYEAEVPVNWSPDLGTVVANEEVIDGKTERGGYP VYRKNMRQWMLKMTAYADRLLEDLDDLDWPEPVKEMQRNWIGRSEGAQVTFKVKDSDKTF DVFTTRPDTLFGVSYTVLAPESKLVQEITTPEQKEAVDAYIKKIESKSDLERTDLNKDKT GVFTGAYAINPVNGKEVPIWISDYVLASYGTGAVMAVPAHDDRDYAFATKFGLPVNPVIE GGDIEKEAFTGNGKHFNSEFLDGLDNEEAKKRMIEWLEDHNCGKKKVNYKLRDWDFSRQR YWGEPIPVIHWEDGTTSLVPEDQLPLRLPHATDIKPSGTPESPLANLTDWVNVVDENGRK GKRETNTMPNWAGSSWYYLRYVDPHNDKELADYDLLKKWLPVDLYIGGAEHAVRHLLYAR FWHKVLYDLGVVPTKEPFQRLYNQGLILKNHEKMSKSKGNVVNPDDVIDEYGADSLRMYE MFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQERIVDKNDGELDKVYAET VKKVTEDFDALHFNTAISQMMVFMNAAQKAKTIPREYAEGFVKLLAPVAPHMMEEIWQVF GHDESITYAKWPTYDPAKLVESTVEIMVQVNGKLRGKFQAPKDADRDDLQKQAMEIEHVK KFLEGKDVKKVIVVPNKIVNIVAK >gi|227863469|gb|ACKR01000002.1| GENE 14 15659 - 17305 1730 548 aa, chain + ## HITS:1 COG:lin1665 KEGG:ns NR:ns ## COG: lin1665 COG2244 # Protein_GI_number: 16800733 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Listeria innocua # 16 546 5 536 537 312 35.0 1e-84 MEEENNLNSKDTQNTFLKGSAWMTFGSIASRILGALYIIPWYAWMGPYGNIANALTARSY NIYTIFILISTAGIPGAIAKQVAKYNALNEYGIGRKLFRKGLILMTILGIVSAAIMYFAS PLLASNGSQSDPRQVAVMRSLSYAILIIPILSIMRGYFQGYADMMPSAMSQFVEQFARVV WMLLTAFVIMQMQHGSYVHAVIQSNLAAAVGALFGIGLLVWFLLSRRERLDYLVAHSNNR LRVSTTDLFGEIIAQAIPFIIIDSGITLFSLVDQYTFHPMIASLVHASSDTIEDWYALFG LNANKLIMIIVSLASAMAVTAIPLLSAAHTRGDYKSISSQIANTMDLFLFVMIPAAFGMA AISKPMYTIFYGPDPLGSNVLYISAFTAISLGLFTVLMAILQGLSENGLAIKYLILGLIL KGILQYPMIFLFKIYGPLVATNLGLLVIVFLSLKHLEVQYNFNLNRTSRRLMGVTAFSIG MFLIVKLVEIGLGKFLSPERRIPALFLVIFSVGVGVIFYGFVTLKTDLAQKILGSKIESI LVKFHIHD >gi|227863469|gb|ACKR01000002.1| GENE 15 17693 - 18013 496 106 aa, chain - ## HITS:1 COG:MA4346 KEGG:ns NR:ns ## COG: MA4346 COG1983 # Protein_GI_number: 20093134 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Putative stress-responsive transcriptional regulator # Organism: Methanosarcina acetivorans str.C2A # 1 72 111 183 183 61 46.0 5e-10 MKKRLTKSQNKILAGVLGGIANYFDLDPAWVRIIGAALILFTGIFPGIALYIIAAMVMPE PGQIAPKAEKHTTDYQTGRPNTMNGDFTKSDDSSSDSDEKKDDNQE >gi|227863469|gb|ACKR01000002.1| GENE 16 18323 - 19624 1308 433 aa, chain + ## HITS:1 COG:BS_dacA KEGG:ns NR:ns ## COG: BS_dacA COG1686 # Protein_GI_number: 16077078 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus subtilis # 5 431 4 426 443 231 37.0 2e-60 MFFSKKIKRVAITTVAAVSIFSCGAVFATTPVNADTTSSYQADQVKLNVKSAIAIDSDSG QILYAKNATKTLPIASMTKLVTVYLTLQAIKNHKLSWDQKVKPTAPIVKVANNAEYSNVP LKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFVDQMRAQVKKWGIEDTKIYTA CGLPNGNVGKDAYPGVNKNAENSMSAKDMAIVGQNLIKDFPEVLDTTKLAHLDFKDAGHA TKMANFNWMLKGLSQYDPAYPVDGLKTGTTDAAGACFIGTVQHNGARLITVVMGARHRDG TDPARFMQTKKLMNFIFTKYRPVTMTAGSQMNGAKTIKVTDGDNATTNLGLKNKTTIWDP ADGKTLVASLNKKTVEAPIKKDQTIGDYQFKSGNEKIVSLSNPNGMNVKAKALSANNKVN FFVRIWRWIFGGR >gi|227863469|gb|ACKR01000002.1| GENE 17 19597 - 20472 383 291 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90022317|ref|YP_528144.1| ribosomal protein S15 [Saccharophagus degradans 2-40] # 8 285 224 499 500 152 34 3e-36 MALDFRRKINMTEISEDILKKVIKERESDTHKGDYGRVLLIGGSENYGGAIIMSTEGAIN AGTGLTAVATHPLNLASLHARVPEAMFINWRDAKLADLIKNTDVVICGPGLGMSDLAKQI LVILRRCTSEKQTVVLDASALDLISQDKNLLPTNAGHLILTPHQMEWQRLSQIRIPFQTD SANIDALNQLIPDTNALLVLKSNHTHVYNGTGQIFVNPIGNPGMATGGMGDTLAGIIGGM VAQFGPGVETVQSAVYLHSLAGDLLAKDNYVVRPTELSKVLPKLMKKYCLN >gi|227863469|gb|ACKR01000002.1| GENE 18 20624 - 21310 740 228 aa, chain + ## HITS:1 COG:BS_yciB KEGG:ns NR:ns ## COG: BS_yciB COG1376 # Protein_GI_number: 16077404 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 30 225 21 193 194 116 35.0 3e-26 MKKNIIIGVTSIVLAFGAIIGLAKVCAPKSDVSQEAATTQTKAKTKKINKIKKKQAKKVD NGALYRPYSDPKDLRKAGTWKKKSEPKKYPKIKPYEKDLTLRVSLKGNRTYLLRKGKVLY TMLSTGGIYKKGKSLTPTGTFRIQNGRGDSFFNYNLGEGANNWTSWSPDNVYLFHSVPTK ADYSYNLKEAAKLGRTQGSHGCIRLSVPDSKWIMDHIPDGTKVVIKNN >gi|227863469|gb|ACKR01000002.1| GENE 19 21674 - 23359 2203 561 aa, chain + ## HITS:1 COG:L0344 KEGG:ns NR:ns ## COG: L0344 COG0018 # Protein_GI_number: 15674020 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Lactococcus lactis # 1 561 1 564 564 623 56.0 1e-178 MDFKNEVVDLVASQVDLPKEKIAALIERPKNAKMGDYAFPAFILAKTLHKNPAEIAKNIA DNLSSDNFANIQAVGPYVNFAIDHEKLVSSTLKDVLTEKEHYGDQKIGEGNVPIDMSSPN IAKPMSMGHLRSTVIGNSIAKTMEKVGYTPIKINYLGDYGTQFGKLIAAYKHWGNEEDVK KDPIMNLFHYYVKFHQEAEKNPELDNEGREWFKKLEDGDPEAVKLWKWFREVSLKDFKRI YKELGVTFDSYNGEAFFNDKMQPVIDELKEKGLLHESRGAQVVDMGEGENPAIIVKSDGT SIYLTRDLAAAEWRMKEYNFVKMLYVVGNEQAQHFVELKTVLKKMGYDWADEIHHVPFGL ITQGGKKLSTRKGNVVFLDQVLKDAVSLAKKQIQEKNPDLADQDQVAHDVGVGAVVFHDL KNDRLDNFDFDLEEVVRFEGDTGPYVQYTNARAQSVLRKAAAMGENPSETDLALDDDWAF AVAKDLADFPRIVARSAEKFEPSVIAKFALDLAKKFNKYYANVKILTKDDKIGARLALVQ ATSIVLTESLRLLGVNAPKEM >gi|227863469|gb|ACKR01000002.1| GENE 20 23470 - 24381 1187 303 aa, chain + ## HITS:1 COG:SP0605 KEGG:ns NR:ns ## COG: SP0605 COG0191 # Protein_GI_number: 15900513 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Streptococcus pneumoniae TIGR4 # 6 284 5 290 293 308 54.0 1e-83 MAYFDNGNQIFKDARKNHYAVGAYNTNNLEWTRAELRAAEETRTPLLIQVSTGAAKYMGG YKFVKDMVADQMDSMNISVPVILNLDHGDFESAKECIALGYSSVMFDGHALPTDENLEKT KEIIKLAHERGISVEAEIGKIGENQGGGELASVEDAKKFVAAGVDKLACGIGNIHGVYPA DWKGLNFDRLKEIAEAVPDTPLVLHGGSGIPEDQVKKAIKLGIAKININTEFQLAFQEAT RKYIEDEKDLDKKAKGYDPRKLLLPGAEAITAKMKEMISWMGTKTIDDELKDASFDRSSL NEE Prediction of potential genes in microbial genomes Time: Wed May 25 06:04:31 2011 Seq name: gi|227863464|gb|ACKR01000003.1| Lactobacillus crispatus JV-V01 contig00003, whole genome shotgun sequence Length of sequence - 2361 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 19 - 543 504 ## LJ0704 hypothetical protein 2 1 Op 2 . + CDS 559 - 1134 409 ## LJ0704 hypothetical protein 3 1 Op 3 . + CDS 1138 - 1341 143 ## LGAS_0510 hypothetical protein + Prom 1352 - 1411 5.6 4 2 Tu 1 . + CDS 1461 - 2361 543 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase Predicted protein(s) >gi|227863464|gb|ACKR01000003.1| GENE 1 19 - 543 504 174 aa, chain + ## HITS:1 COG:no KEGG:LJ0704 NR:ns ## KEGG: LJ0704 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 6 170 1 164 361 89 34.0 5e-17 MEEKMLNPFMPSFGRFPKIIIDQQEALTDYLTGLQTHDAKYQTSLVYGTRGSGKTVFLLN VQRSLAKLDNWIFIRLNNGQGNLLFQLMHGLQRVAGISLVDLLKSVKSLNIMGKGITWQA LQESQQIDYDEYISILLSRLKKQGKSILIGIDEIEISDDVRAFGSEYQTLIGDE >gi|227863464|gb|ACKR01000003.1| GENE 2 559 - 1134 409 191 aa, chain + ## HITS:1 COG:no KEGG:LJ0704 NR:ns ## KEGG: LJ0704 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 184 175 356 361 173 48.0 3e-42 MTGLPSRISEVQYDNTLTFLLRSNRVYLSPLDKKTIANSYEKAFTKGKREIDFMVLDEMS RAVKGYAYAFQTIGYYAWRFSRELLQLNEEVLKQTIRAAKKDLFRNAYERMYMDLSKNDR DFIEAIIKAGTDRVTTKQLQDILNKPINYISVYRARLLDDQLITSPQRGVVQLALPFFAE FVEKSNLEHLS >gi|227863464|gb|ACKR01000003.1| GENE 3 1138 - 1341 143 67 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0510 NR:ns ## KEGG: LGAS_0510 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 67 1 67 69 79 64.0 5e-14 MSKYNKLWQYIKDNKAGDFELSFDELGQQAGVALDHSFLRYKKELPAYGFEVQKISLKNK VVKFHQL >gi|227863464|gb|ACKR01000003.1| GENE 4 1461 - 2361 543 300 aa, chain + ## HITS:1 COG:L187450 KEGG:ns NR:ns ## COG: L187450 COG1575 # Protein_GI_number: 15672164 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Lactococcus lactis # 5 299 1 296 301 139 30.0 8e-33 MKKVLSWPVYYQLSEIYTAPLNVIWFVFGAAMSFQQYHMFNLINILLCLVDVFLFDLAVN IADNYYDYLHGKDRHFLTDINPIGRLKLPLTDVRNLVWISYFISAIPGIILVYRTGWPVL IMGVVGYFIGIFYTAGPKPLNATPICELVVSFFISYFIMLVSIYVTIYGTYPLTWNLALT TLIRCLPLTLIFYALQLANNTCDLHEDLNNGRHTLASYTGKKYALKIIKTLIIAGLLFPI IVVLFGLAKWPLIFSCFLLPILWQKLKQFFEHPDKQTTYLQMIKYLSIFFITYIAIYTVL Prediction of potential genes in microbial genomes Time: Wed May 25 06:04:50 2011 Seq name: gi|227863426|gb|ACKR01000004.1| Lactobacillus crispatus JV-V01 contig00004, whole genome shotgun sequence Length of sequence - 37110 bp Number of predicted genes - 36, with homology - 36 Number of transcription units - 22, operones - 7 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 100 - 159 8.6 1 1 Op 1 13/0.000 + CDS 192 - 1199 1383 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 2 1 Op 2 13/0.000 + CDS 1221 - 2030 1199 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 3 1 Op 3 4/0.000 + CDS 2059 - 2979 1145 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 4 1 Op 4 . + CDS 2983 - 3351 426 ## COG4687 Uncharacterized protein conserved in bacteria + Term 3354 - 3405 10.5 - Term 3349 - 3387 7.2 5 2 Tu 1 . - CDS 3394 - 4275 877 ## COG0583 Transcriptional regulator - Prom 4330 - 4389 5.9 + Prom 4251 - 4310 8.5 6 3 Tu 1 . + CDS 4384 - 4902 409 ## COG0110 Acetyltransferase (isoleucine patch superfamily) + Term 4906 - 4937 -0.7 - Term 4893 - 4925 2.0 7 4 Tu 1 . - CDS 4934 - 6307 923 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 6410 - 6469 7.6 + Prom 6515 - 6574 6.9 8 5 Op 1 6/0.000 + CDS 6621 - 7478 853 ## COG1012 NAD-dependent aldehyde dehydrogenases 9 5 Op 2 . + CDS 7385 - 8665 1332 ## COG1454 Alcohol dehydrogenase, class IV 10 5 Op 3 . + CDS 8732 - 9229 580 ## COG1454 Alcohol dehydrogenase, class IV + Term 9247 - 9313 12.0 + Prom 9306 - 9365 7.4 11 6 Tu 1 . + CDS 9426 - 11237 2346 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains + Term 11263 - 11299 5.0 + Prom 11257 - 11316 4.8 12 7 Op 1 4/0.000 + CDS 11338 - 13392 1056 ## COG3711 Transcriptional antiterminator + Term 13423 - 13462 8.4 + Prom 13441 - 13500 7.9 13 7 Op 2 . + CDS 13527 - 15308 2095 ## COG2213 Phosphotransferase system, mannitol-specific IIBC component 14 7 Op 3 15/0.000 + CDS 15324 - 15776 598 ## COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain 15 7 Op 4 . + CDS 15779 - 16948 1511 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases + Term 16964 - 17012 11.8 + Prom 16977 - 17036 8.2 16 8 Tu 1 . + CDS 17150 - 17377 154 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit + Prom 17422 - 17481 3.3 17 9 Tu 1 . + CDS 17509 - 17838 455 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit + Prom 17841 - 17900 8.5 18 10 Op 1 . + CDS 17925 - 18152 356 ## lhv_0500 hypothetical protein + Term 18202 - 18239 4.0 + Prom 18223 - 18282 8.2 19 10 Op 2 . + CDS 18304 - 18717 537 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes + Term 18728 - 18795 17.1 - Term 18722 - 18775 12.1 20 11 Tu 1 . - CDS 18863 - 19717 578 ## LCRIS_00472 ranscriptional activator Rgg/GadR/MutR-family - Prom 19761 - 19820 5.6 21 12 Tu 1 . + CDS 20106 - 21725 775 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 21730 - 21769 4.1 - Term 21713 - 21761 9.5 22 13 Tu 1 . - CDS 21816 - 23474 2151 ## LCRIS_00475 phosphoenolpyruvate carboxykinase (ATP) - Prom 23563 - 23622 7.2 + Prom 23535 - 23594 6.0 23 14 Op 1 . + CDS 23658 - 25508 1539 ## LCRIS_00476 hypothetical protein 24 14 Op 2 . + CDS 25513 - 26841 1191 ## LCRIS_00477 biotin carboxylase 25 14 Op 3 . + CDS 26853 - 29084 1691 ## COG1201 Lhr-like helicases 26 14 Op 4 . + CDS 29116 - 29493 523 ## LBA0471 hypothetical protein + Term 29515 - 29555 5.0 + Prom 29540 - 29599 9.8 27 15 Op 1 . + CDS 29718 - 30968 1367 ## COG0004 Ammonia permease 28 15 Op 2 . + CDS 31020 - 31778 872 ## COG0778 Nitroreductase + Term 31882 - 31949 30.2 + TRNA 31860 - 31935 79.9 # Thr CGT 0 0 - Term 32098 - 32147 8.2 29 16 Tu 1 . - CDS 32153 - 32560 363 ## COG3223 Predicted membrane protein - Prom 32657 - 32716 4.3 + Prom 32616 - 32675 7.7 30 17 Tu 1 . + CDS 32701 - 33303 668 ## COG0110 Acetyltransferase (isoleucine patch superfamily) + Term 33310 - 33349 6.2 - Term 33294 - 33341 7.5 31 18 Tu 1 . - CDS 33355 - 33750 467 ## LCRIS_00483 hypothetical protein + Prom 33629 - 33688 5.4 32 19 Tu 1 . + CDS 33847 - 34077 368 ## LCRIS_00484 hypothetical protein + Term 34193 - 34228 -0.6 - Term 34063 - 34122 4.2 33 20 Tu 1 . - CDS 34124 - 34324 222 ## LCRIS_00485 hypothetical protein - Prom 34434 - 34493 7.2 + Prom 34305 - 34364 7.4 34 21 Tu 1 . + CDS 34467 - 35339 890 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases + Term 35443 - 35483 -0.7 + Prom 35458 - 35517 8.4 35 22 Op 1 . + CDS 35724 - 36470 883 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 36 22 Op 2 . + CDS 36510 - 37061 506 ## COG1455 Phosphotransferase system cellobiose-specific component IIC Predicted protein(s) >gi|227863426|gb|ACKR01000004.1| GENE 1 192 - 1199 1383 335 aa, chain + ## HITS:1 COG:CAP0066_2 KEGG:ns NR:ns ## COG: CAP0066_2 COG3444 # Protein_GI_number: 15004770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Clostridium acetobutylicum # 169 335 1 168 168 206 62.0 4e-53 MVGIVLASHGGFADGIAQSAQMLFGEQDNFAHVILKPDEGPDDIRGKMEKAIASFDNQDE VLFLVDLWGGTPFNQANWLAEKHDKWAIVAGMNLPMVVQALTERMMDANATAKHIATAVV QPGRDGIKTKPADLMPKTAAAAPVADKAAAKGSKKSIPEGTVIGDGHIKYVLARIDSRLL HGQVATGWIPAMKPDRVIVVSDSVAKDDLRKSMIREAAPAGVKAHTVPLKKMQEIAKDPR FGNTHALLLFENPEDVLRAIKGGIDLKNINVGSMSYKEGDVNANNVLSMNQKDVDTFREL EKMGVKFDVRKVPSDAPGNMDAILKKAQTLLDEKK >gi|227863426|gb|ACKR01000004.1| GENE 2 1221 - 2030 1199 269 aa, chain + ## HITS:1 COG:lin0144 KEGG:ns NR:ns ## COG: lin0144 COG3715 # Protein_GI_number: 16799221 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 269 1 268 268 265 67.0 7e-71 MNAIQMILVVFVAFLAGMEGILDEWQFHQPLVACTLIGLVTGHLDLGVALGGSLQMIALG WANIGAAVAPDAALASVASAIILIEGGQGIKGIGTATGIAIPLAVAGLFLTMIVRTISTA IVHIMDAEAKKGNWRMINLWQWIAVCLQGLRIAIPAALLLAIPSGTVRSWLAMMPQWLNE GMTIGGAMVVAVGYAMVINMMASKEVWPFFAIGFALAAIKDLTLIALGAIGLSMALMYLA LEAKGGNGGNNNSGDAGTGDPLGDIIDDY >gi|227863426|gb|ACKR01000004.1| GENE 3 2059 - 2979 1145 306 aa, chain + ## HITS:1 COG:lin0145 KEGG:ns NR:ns ## COG: lin0145 COG3716 # Protein_GI_number: 16799222 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 4 306 3 303 303 415 68.0 1e-116 MADKKTKLTKRDRFNVMWHSQFLQGSWNYERMQNGGYAYSMIPALRKLYPNKKDLSAALQ RHLVFFNTHPYLASPVLGVTLALEEDKANGAEVTDDAIQGVKVGMMGPLAGVGDPVFWYT VRPIVGALGASMAIAGNVMGPILFFVIWNIIRIAFLWYTQEFGYKAGSAITSDMSGGMLQ KVTRGASMMGMFVLGALIERWVNIKFTPIVSQTPIQKGGYIEWDKLPSGAKGIQSALQQW DMGNGKALSSTKVTTLQDNLNQLIPGLAGLLLTFFCMWLLKKKVSPIWIIIGIFVVGVLF HVWGIL >gi|227863426|gb|ACKR01000004.1| GENE 4 2983 - 3351 426 122 aa, chain + ## HITS:1 COG:CAP0069 KEGG:ns NR:ns ## COG: CAP0069 COG4687 # Protein_GI_number: 15004773 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 121 12 131 135 128 52.0 3e-30 MAKSINTKVDLTVDATWFRGIASYGKIMIGDRAFEFYNERNVEDYVQIPWNEVTYVVADV RFGGRYIPRFEIRTKSNGKFVFAARDSKKVLRAIRKYVPADHMRRALSLWQRLKQRFSRK KK >gi|227863426|gb|ACKR01000004.1| GENE 5 3394 - 4275 877 293 aa, chain - ## HITS:1 COG:lin0450 KEGG:ns NR:ns ## COG: lin0450 COG0583 # Protein_GI_number: 16799526 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 289 1 288 291 189 35.0 4e-48 MELRVLNYFVATAQELNMTRAAQKLLVSQPALSRQIADLEDELGVKLFNRQPRHLTLTPA GQYLYEQAKEILTLASKTKSNLQSSAVISGDLTIAAGESFAMQRLMNIVSNIIRDYPTVK IHILSGDYEFAERRLDTGAVDFAVIIGNLPLDNYASLQLPEKDTWGVLMTKDDPLAKKSA ITAEDLVGRNVLNSQQAENRKYFDSWFGNYKEQINIIGTVNLNFNGTLLVKNKAAIMLTL DKLANISDESNLTFRPITPMLKQPVTVIWKRETNKSPVADLFLNRLRASIDDD >gi|227863426|gb|ACKR01000004.1| GENE 6 4384 - 4902 409 172 aa, chain + ## HITS:1 COG:lin0451 KEGG:ns NR:ns ## COG: lin0451 COG0110 # Protein_GI_number: 16799527 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Listeria innocua # 11 170 27 186 189 184 55.0 1e-46 METEDHDLRRKLAQQNQRLLQNLNTQRHCSCEVRQLISEIIGQKIAASIEIRLPFYSDYG HNIKLGERVFINANVMMVDLGGITIENDVLIGPGAYLISVNHKLDPQHRKELELKPVVIK QNAWIGAKATILPGVTVGKNAVVAANAVVTKDVPANTVVAGNPAKIIKKIAK >gi|227863426|gb|ACKR01000004.1| GENE 7 4934 - 6307 923 457 aa, chain - ## HITS:1 COG:BS_ydgF KEGG:ns NR:ns ## COG: BS_ydgF COG1113 # Protein_GI_number: 16077629 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Bacillus subtilis # 13 450 16 452 458 365 43.0 1e-101 MSEKKTQTASGYKRTLSNAHIQLIALGGTIGTGLFLGVGDSIHRAGPSVILIYIIVGIFL FLLMRALGELIMSDLNKHTYIDFIEQYLGKNIGFITGYLYWLSWITLGMAETTALGIYFK YWFPTLKPWIPGIITIVILLLINLISARVFGNLEFSFAIIKIVTIIAFVILILYLLVTGG KTSFGPVSFANLDDHGGFFARGSKGFLQGFQMVIFSFIGVELIGLTAAEAQKPETTLKRA INQLPIRIILFYVMAILGILLVIPWSKVATNASPFVEALGATGIKNASSIINFVVISAAV SSTNSFLYSAGRLLFSVTFDGKGKWNKTFGHLSRRQLPQNALTLSALLMGCAPLITLVIG DQAFNFISSTSTSMFLIIWSLMILTHMAYRRKTAANQLNDFQMPGYPYIDYVILSFFVLM IILLLILPSYRVPMVAAIAIFIVLYIISKIWSNEKAV >gi|227863426|gb|ACKR01000004.1| GENE 8 6621 - 7478 853 285 aa, chain + ## HITS:1 COG:lin1675_1 KEGG:ns NR:ns ## COG: lin1675_1 COG1012 # Protein_GI_number: 16800743 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Listeria innocua # 18 231 13 226 455 253 57.0 3e-67 MAKTQQKETLTEDEKKKQIYDMVDNLVKKSHVALDQMANFTQEQVDKICEAVATAGEQNA YPLAKMAVEETKRGVVEDKTTKNMYASENIWNSLRHEKTVGVIEEDKELGLTKIAEPKGV IAGVTPVTNPTSTVIFKAMLALKTRNTIIFGFHPQAQKCCVETGKIIRAAAVAAGAPADA VQWIEEPSLDATTDLMTNPGVQTILATGGPGMVKAAYSSGKPAIGVGPGNVTLKRLLILT VQFMTLFYQRTLITVWFVLLKIQLSLILKFMTKLKKNLRSGTATS >gi|227863426|gb|ACKR01000004.1| GENE 9 7385 - 8665 1332 426 aa, chain + ## HITS:1 COG:lin1675_2 KEGG:ns NR:ns ## COG: lin1675_2 COG1454 # Protein_GI_number: 16800743 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Listeria innocua # 204 426 1 224 411 237 52.0 3e-62 MVCASENSVVVDTEIYDKVKEEFKKWNCYFLNKGEIKKFEEHFIDPRRGTVAGPVAGKSA YEIAKLCGVDVPKTTKVIIAEYKGVGRNFPLSAEKLSPVFTLYRAKNHDDAFKICTDLLN YGGRGHTAGLHSNDKKIIDEFAMKMDACRILVNSPAALGGIGDLYNNMLPSLTLGTGSYG ANTFSHNIGAKDLLNIKTVARRRDNMQWVKVPSKTYFEHNAANYLRHMPNVNRFFIVTDE GVADQGFADEVTDIISKRLGQKEYEVFKAVTLDPNTDVIKDGVHRMNIFKPDVVIAIGGG SVMDAAKAMRLFYENPEMSFEEAYQKFLDIRKRVVRFPKINGVQLVCIPTTSGTGSEVSP IAIISDAKTGIKHTLCDYALTPDVSIVDDQFVQTLPKRLIAWSGFEALGHAIESYVSTMA TDFTRG >gi|227863426|gb|ACKR01000004.1| GENE 10 8732 - 9229 580 165 aa, chain + ## HITS:1 COG:SA0143_2 KEGG:ns NR:ns ## COG: SA0143_2 COG1454 # Protein_GI_number: 15925852 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Staphylococcus aureus N315 # 1 160 251 410 411 160 45.0 1e-39 MHDAATIAGMAYSNAFLGLEHSIAHTVGSTFDIPSGVSDAIALPQVIRFNAKRPEKLAMW PHYSVYRAESDYAEIARAIGLTGSSDAELIEKLVQKIIDLAESVGIKMAFKDYGVDKAEF DKKVDQLAVEAYGDQNTVTNPSAPLISQISQLMRDCYEGKGIKNK >gi|227863426|gb|ACKR01000004.1| GENE 11 9426 - 11237 2346 603 aa, chain + ## HITS:1 COG:SP0266 KEGG:ns NR:ns ## COG: SP0266 COG0449 # Protein_GI_number: 15900200 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 603 1 602 602 682 57.0 0 MCGIVGVVGKPARDIILNGLTNLEYRGYDSAGIYLNDLNGNEYLTKAVGRISNLKEKLTP DEQGLVGIGHTRWATHGKPTVDNAHPHFDETKRFYLVHNGVIENYTELKEKYLQGVKFHS DTDTEVVVQLIGKIARDKNLDAFSAFKEALKLVKGSYAFLLVDNTEPDHVFIAKNKSPMM LGIGDGFNIIASDAISVLDQTKTFVDLQDGDVGDITKDSYTIETVDGKKVDREPHVLNID PNAASKGTYEFYMLKEIDEQPGVMRHMSQNYLDENGEPKVDQDIIDAISKADRLYIFAAG TSYHAGLVGKTIFEHYTGIPTEVGYASEAGYHFPMMSKHPFFIFLTQSGETADSRVVLKE ANKRGIPSLTMTNVEGSTLSREANYTMLLGAGPEIAVASTKAYTAQVALQAILAKALGEK LGNQDAKDWDLQHDLAIAAEGIQQIVDGKEKLKELADQYIVKSRNAFYIGRGIDHAVALE GALKLKEVSYIQTEGFAAAELKHGTISLIEDGTPVIALINDPVTADLTRGNIQEVASRGA SVITIVGKEFANSDDTIVLPEINYYMSALLTVVPTQLLAYYASKDKGLDVDKPRNLAKSV TVE >gi|227863426|gb|ACKR01000004.1| GENE 12 11338 - 13392 1056 684 aa, chain + ## HITS:1 COG:BS_ydaA KEGG:ns NR:ns ## COG: BS_ydaA COG3711 # Protein_GI_number: 16077483 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 1 679 1 691 694 208 24.0 3e-53 MFLTQRQKHILQILLGNPSGVSIKQIEESLKISRRTVYREFGDLKKNDFKIENQKGKYFL SGDSKQLQEIKQSVQQSHSQNVISVAKREKIIAAKLLLSTEPCKIIQFALDLNVSEATIQ SDLNTVERSLKRYHIDLIRKKGVGLLIQAPEKIRRQVLVDIMLNQINEYNFFKYLHNETT SKDMFLTMIDKALLVEVADCLKKSVFGKIKLDSDQKLIELILTFAVTIKRTLAGCKLDFI HPSADSLKYQGYVYRFMALFAQKRQVEVDQNDVSYLANKLLSCDYHNTYLTYNERELAIS VKVKEFVQHVSEEMHWDFQKDHSFMTKVTKHVIGLVQHKVALLPDTPIEILAGLSQKFPD LYLAIQKYWHLAFPENYLTASELQLILLYFANEYTSRNQQRNLSALVICENGIGTSAILG AKLKREFSEIKEVKTSRVSALNQIDLSNYNLIFSTLRLKGFSRDYLLVSPLLLDDELIKI RAYLKDYEQKYPQPVPAKQVVEEKHPHSVEQLAKLSISTLFCSELVNGIKIQQLEYNSQD LIAVIQECLAHSDSTLIRKQMPVAKNLLKRVRMAPVGIPNSHIALLHTRSPEITRCSFTM FDLDNEISLQSMDHDTIQVKRVLLMLAPDNLTAPEQRVMSTISSMIIMSSQNLDLFTNGS QKEIKEAIAALFLQDLKDRLLGNQ >gi|227863426|gb|ACKR01000004.1| GENE 13 13527 - 15308 2095 593 aa, chain + ## HITS:1 COG:SP0394 KEGG:ns NR:ns ## COG: SP0394 COG2213 # Protein_GI_number: 15900314 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannitol-specific IIBC component # Organism: Streptococcus pneumoniae TIGR4 # 5 580 2 575 589 525 51.0 1e-148 MAQAKSKSSVKVKVQKFGTALSGMIMPNIGAIIAWGLTAAFFMYPHGWFPNKEINNLVQP MLHYLLPLLIGYTGGRMVYEERGAIAGAIGTLGVIVGTDQPMFLGAMIMGPLSAWLLKKL DQVFQDKIKSGFEMIYNNFSLGILGMIAAIFAFFIIGPIMEVGSQWASAGVNAIIRVHLL PLANIIIEPAKVLFLNNAIGNGILVPLGIQQAAQVGKSVLFLMESNPGPGLGILLAFTLF GKGKSKSSAPGAAIIEFFGGVHEIYFPYVLMKPSLILAAIGGGVTGTFLFTTLGGGLKAA ASPGSILAILLVSAKDAYFGNIVGVLGAAVVSFIIAAIILKNDKSTGDELEAKQAQMQAM KAQSKGQSMPEAEDAHESVKSYANVKKIIFACDAGMGSSAMGASLLRDKFKKAGIKVSVT NTAVRNLKDEDGLLIITQEELADRALQKTPHAMHVAVGNFLSSPKYDTIVASFKALTQVE DKPKAEKPVKKVGSLEGIDFSKVKEVDFIRHDQHLGTATMATSLFNDAIKKAGKTTPVKA VRINELTDDPSHLVIVTPAANKNLAVRYSDIQTLVVDDLLKDKKLGEAIQKLN >gi|227863426|gb|ACKR01000004.1| GENE 14 15324 - 15776 598 150 aa, chain + ## HITS:1 COG:L32907 KEGG:ns NR:ns ## COG: L32907 COG4668 # Protein_GI_number: 15672005 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol/fructose-specific phosphotransferase system, IIA domain # Organism: Lactococcus lactis # 3 147 1 143 143 157 50.0 5e-39 MALQLDPKMIKLNQDVPTRDQAIRMAGQLLVDGGCVEPEYIDSMLARNEDVSTYMGNFIA IPHGTDEGKKHIKKTGISVVQIPMGVDFSDPKDDTEQLVTVVFGIAGLNNEHLNILSQIA IFCSDVSNVAKLADAQTPEEIIDLLKNVGD >gi|227863426|gb|ACKR01000004.1| GENE 15 15779 - 16948 1511 389 aa, chain + ## HITS:1 COG:SP0397 KEGG:ns NR:ns ## COG: SP0397 COG0246 # Protein_GI_number: 15900317 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Streptococcus pneumoniae TIGR4 # 3 378 4 376 378 423 56.0 1e-118 MRAVHFGAGNIGRGFIGETLADNGFGIDFVDVNETIIDELNKRGEYDIELAAPGKKRIHV SNVDGINNAKDPDKVVEAIKSTDMITTAIGPKILAIIAPLIAKGLTARIQSGNTTPLDVI ACENMIGGSEHLKEEVYKHLDDDVKPELDKYIGFPNAAVDRIVPIQHNDDPLFVSVEDFK EWVIDESQMKNKDIKLKGVDYAPDLEPYIERKLFSVNTGHATVAYTGKSLGYDTIGDAIK DPFVLKQVKRVLSETRSLLYHKWNKEFTEESLEEYHNKILSRFQNPYISDDIARVGRTPI RKLGYNERFIRPIRELKDRGLDYSALMETVGRIYHFDEPNDKESVKLMQMLKDEDLKDVI VETTDLKDDPELVDEIVKSYHDAEADKKN >gi|227863426|gb|ACKR01000004.1| GENE 16 17150 - 17377 154 75 aa, chain + ## HITS:1 COG:MA0409 KEGG:ns NR:ns ## COG: MA0409 COG0599 # Protein_GI_number: 20089302 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Methanosarcina acetivorans str.C2A # 1 68 22 89 250 58 42.0 4e-09 MKATDPEALERINHFAFDEVQKDVDLPDRTKMLSTLAYLLGMQGKEEYEIMLPVVLDNGV NPVEAKEVYIKRLII >gi|227863426|gb|ACKR01000004.1| GENE 17 17509 - 17838 455 109 aa, chain + ## HITS:1 COG:MA0409 KEGG:ns NR:ns ## COG: MA0409 COG0599 # Protein_GI_number: 20089302 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Methanosarcina acetivorans str.C2A # 17 100 163 246 250 111 55.0 3e-25 MRLFGPQMKGFAKKGTINKWLVDNCFGAYYTRKGLDDNDREMITFCYIAAQGGCEPQLMA HAQANIKLGNDKEFLMKVIEQNVPFIGYPRSLNAVSVVNKADEAVNGKN >gi|227863426|gb|ACKR01000004.1| GENE 18 17925 - 18152 356 75 aa, chain + ## HITS:1 COG:no KEGG:lhv_0500 NR:ns ## KEGG: lhv_0500 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 75 1 75 75 101 85.0 1e-20 MADAKEIEETALIDRNMDQVFDWAKGNEMPIRDAIWDHEMEVNGRDTMKTEAAVEWILKA DDDKVKEYCEKNLKK >gi|227863426|gb|ACKR01000004.1| GENE 19 18304 - 18717 537 137 aa, chain + ## HITS:1 COG:CT771 KEGG:ns NR:ns ## COG: CT771 COG0494 # Protein_GI_number: 15605504 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Chlamydia trachomatis # 2 136 5 144 150 57 33.0 6e-09 MKMEHSAGAVIYRERRSGELKYLIVQSVVNHNWGFPKGHLENNETAEEAARREVFEEVGL KPNFDFTFREKTEYQLTVDKAKTVVYFVASYVAGQEVNIQKEEILASKWVNLAEAQKYLT EHEKMDILTKAQNYIEQ >gi|227863426|gb|ACKR01000004.1| GENE 20 18863 - 19717 578 284 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00472 NR:ns ## KEGG: LCRIS_00472 # Name: not_defined # Def: ranscriptional activator Rgg/GadR/MutR-family # Organism: L.crispatus # Pathway: not_defined # 1 284 1 284 284 501 99.0 1e-141 MYGQKFKALRLQQHISLEQAANRVISPSTLSRWENNKIDIRFNLVIKLLDNIHINLKEFT NYCKINHSNPFVAKVAMYYEANDDRHILQLIQSKKKEYQNSHNQFDLLLLAIACNCYYDL TDNNVFPVSYQKKLFYILSNIEYWTEMYINVFGNTVFLYDSKELYSISIRILKNLNSNTF NDFQEYYYALSSVINALTALIIKNPKLASQLLTKIEKVSIPKPISYLKIRTNVLKYLLDY RLGKTDEKLISIKLENLKWLGLTDIAKDLTFFFNRIKNDRSPLS >gi|227863426|gb|ACKR01000004.1| GENE 21 20106 - 21725 775 539 aa, chain + ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 21 533 13 533 535 191 27.0 3e-48 MNTQQINFKWVVKHVPIYLQIVFLVLSAISAFEGVLNAVLFGQLTNINFSNIDHVYKFIG LAFGAYLIVYIAMLLFYLVQNRIVMLLNIALKQEYFYSKFANSDMKQARGADVINSISGT AKEIEQKYFFGITDIVQFVFNVVASAIVVVETNLILGIIYLLLSALTLIPSYIGKKRMNE KTEKWNKSNSQLIQAMKDIFEGRLEILNFGVRHLFFKRFDRILVNEEDKYRKMNNCQFQV QFIAWLISLVTLLLPIFIGLLFMQRGWFNVTVAAIITLSLSADRVVGYLRTIALYQTQIH STDAIRKIKSYNFEESESVKQDNHDSQAILKIKDLSFSYGDKKILDGINLTLRDHDKIIV TGASGIGKSTLINCIANNLKYNGEITFAGHQINPADFIKISQRIWLFQGTVRENLSLLQN IPDDLMLHEAKKMGLIHEFGNDFLDKLISDDANNLSGGQAQRLALVRGLIRSKKIYLLDE ICSSLDPKNSDAIHKIIYQLPAIVIEIAHNYNPQLAQENKVQVYKLIDAKLQKQNYIEQ >gi|227863426|gb|ACKR01000004.1| GENE 22 21816 - 23474 2151 552 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00475 NR:ns ## KEGG: LCRIS_00475 # Name: pckA # Def: phosphoenolpyruvate carboxykinase (ATP) # Organism: L.crispatus # Pathway: Glycolysis / Gluconeogenesis [PATH:lcr00010]; Citrate cycle (TCA cycle) [PATH:lcr00020]; Pyruvate metabolism [PATH:lcr00620]; Metabolic pathways [PATH:lcr01100]; Biosynthesis of secondary metabolites [PATH:lcr01110] # 1 551 1 551 552 1101 99.0 0 MSTKECYSQDELRKDNPMFSRTRATIESAFYGNNVHEVTSVAEAYNLAKKQSGVIVTDLP ILHTKELGLPHGATQLVYNHGKILGRTASARHFVDNPNEDAEALDGNLREDIYKGHEQKY LKATVLVGLDPSFTVKAHIMMPEDQAFNLLSYILNFHFFDDEAEKLYEKSKFYDEPDIYF YFDPNVQDEDYPKGLGVFDAPHNCAAVFNLRYFGELKKGTLTLAWAIAHRHGYTACHGGE KSFHFDDKDDKTFAFYGLSGSGKSTLTHEMYDGKYDITVLHDDAFIISREDGSSVALEPS YFDKTHDYPAGHHETKYYTTIMNCDVTLDKDGKKVIVTEDLRNNNGRVIKTRYTSPHRVD FEKSPITALFWIMKDGSLPPIIKIDDPVLATTMGCTLATKRTSAENLPKGFDMNTLVIEP FADPFRAYPVSGDYRDFKELFTKRGASCYSLNTDAFMGKDIPKEVTKKLIEDLANGNIKD SDFKPFGNFKGVSYLPIDGYEVHLEDPEYQKTLAKRMQDRLNWLNKYDEEHPETPIQDEA KKTLEAIIKELI >gi|227863426|gb|ACKR01000004.1| GENE 23 23658 - 25508 1539 616 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00476 NR:ns ## KEGG: LCRIS_00476 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 11 616 1 606 606 1119 98.0 0 MNVRAKKGDKMDSNQLFKYVYAKYGLKFKPAVPGSTSVYVLMSPVDSGYFAILSRGQGQS ILDLKCGAMAALIRDLPGFTDPMKIKAADWVGTILEKVSEDSLKKALDFAFKLAMNGDEV NIAQNQYFYIAPDKVDDRYQAQAIKPSENLRKKHNNSLVPDRIRKMLEVYDYSILPSRGR AKNFYQQARMMADYDDDYPEFFAFKRFYPTYHDMNTGQLRSYFTWRSKIRQHVFEKTSTS YAFVYIYELLNNIGVDDAQDGYEKLLEFEEKYVRQFDISIDVYLQDWLKDYVLYYDLDEK IIKQRFASEIKRDHDYEVLHHPEKFTAQELAAVFAKKTTYWNSSKVINKNEKLFVQLLRY VWLELLDAKKYGIAYYSAFVGKPDIIEKPIFVGSVFYLRKQQVADHQIDAVRKYHFYQGK WQIHCDQQISRQRVNLNNFLHELDRVARTEFKLGRSIKPRFIDQAVLKAINAGIAEYRIQ EKKAQIDQIKIDFSDLDQIRANASKTRDSLLTDEEKQLEQAEAQEEVEKQADETVKVDND YGLDENEMFFLTALLMQQPWQTYLKQHHLMASILMDNINEKLFDEFGDVVLENNEQDQPQ VITDYVDDLKDMFLKG >gi|227863426|gb|ACKR01000004.1| GENE 24 25513 - 26841 1191 442 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00477 NR:ns ## KEGG: LCRIS_00477 # Name: not_defined # Def: biotin carboxylase # Organism: L.crispatus # Pathway: not_defined # 1 442 1 442 442 853 96.0 0 MPQKRRVPKRIAQTVLNSLKGGVVPRIGLPYITVGRKAEIEALLHDVDVIQEGGASFRFI VGRYGSGKSFLLQTIRNYVMDKNFVVVDGDLSPERRLQGSKGQGLATYRELIQNLSTKTR PEGGALTLILDRWINSVQMQVSQETGLNNDDPKFEQAVDQKIYGVISSLNELVHGFDFAK LLNMYYHAYMSGDDETKAKVVKWFRGEYSHKTEAKKELGVDIIIGDSDWYEYLKLFATFF RQAGYAGLMIMIDELVNIYKIPNTISRQYNYEKILTMYNDTLQGKARYLGIIMCGTPQAV KDRRRGVYSYEALRSRLASGKFAQEGARDMYAPVIKLEPLTAEEMLVLTEKLADMHANLY GYERTITDDDLAQFIKIEYARVGADTNITPREIIRDFIELLDIVWQNPDRKITDLLNSDQ FSYTKSEAVSDNVEKDYTEFKI >gi|227863426|gb|ACKR01000004.1| GENE 25 26853 - 29084 1691 743 aa, chain + ## HITS:1 COG:alr3331 KEGG:ns NR:ns ## COG: alr3331 COG1201 # Protein_GI_number: 17230823 # Func_class: R General function prediction only # Function: Lhr-like helicases # Organism: Nostoc sp. PCC 7120 # 2 734 3 719 722 677 44.0 0 MDVFSHYAPFIQDYIYEHGWKSLRPIQVAAAEEIFNTDHNVLLSASTASGKTEAAFFPIL SEIYNEPEDSVKVLYIAPLKALINDQYDRLIDLCTDVDIPVWRWHGDVAQTQKRKLLKHP SGILQITPESLESFMINKHMDIPHLFGGLKYIVVDELHSFLRSDRGGQTFCLIERLSKLA NVNPRRIGLSATIGNLEDASKFLGAGSNRKTVTPRVQNEPQIWHLSMEHFYKTNPQASSR DFDPSQIEPKTDKAPELADPGIGYIFEHTRGKKCLVFTNSREECEAVCQELRAYCAYNHE PDRFIIHHGNLSPALRETAEAAMKDDDVYMTTCATATLELGIDIGKLESAFQIDAPFTVS GFLQRMGRTGRRGNPPEMHFVMREEHPESRAMLPELIPWPLLQGIALVQLYAEEKWVEPP EPNRLPYSLLYHQTMSTLASSGEMTPAELASRVLTLSYFHNVSQDDYRVLLKHLLKTGHI EWTEDGGLIVGLAGERVVNNFKFYAVFQENEEFSVHAGSEELGTIVKPPPVGDKIAIAGR VWVVEDVDIKRHQVYCHEVKGRIPAYFGDVPGDIQPKILQRMKKVLAEKMMYPYLMQNGK ARLTQARDTAALAGLPKNNLIKLGGNMWCLFPWTGTYAFLALERLIRIKCGKKLNIRGFN SSRPYFMYFAMDADEHDFWRILGEEADKDFDPLDLVYPNEVPGIDKYDQYLPKELLRKEF AYSILDIKEMKRCVKQMIEDNLV >gi|227863426|gb|ACKR01000004.1| GENE 26 29116 - 29493 523 125 aa, chain + ## HITS:1 COG:no KEGG:LBA0471 NR:ns ## KEGG: LBA0471 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 125 10 134 134 181 87.0 7e-45 MALKINQSVSKDAQARTLLKELLKVHQIHQAYNVRELTDADEQILEKAFNTTREMMPRIS AKEIKFEDKKWDSLFNFLMAEQISFARVLTNGDDNLNEYVQAKNQAQQAYALVETAINNL ENENK >gi|227863426|gb|ACKR01000004.1| GENE 27 29718 - 30968 1367 416 aa, chain + ## HITS:1 COG:MA3918 KEGG:ns NR:ns ## COG: MA3918 COG0004 # Protein_GI_number: 20092714 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Methanosarcina acetivorans str.C2A # 1 407 1 399 404 281 42.0 3e-75 MINQTNTLFVFVASVLVFFMTPGLAFFYGGMVSKKNAVNTMISVFMITGVAIVLFIAFGY NLALGKDVGGIFGLSKSVFLNGFDLKTLYSKDSGITILTYLMFQMMFSIITPALFVGAVV GRMKFKFLLAFVAIWSILIYYPMVHMVWTPDGILAKTGMLDFAGGTVVHITAGITALFLS IFVGPRIDFDPNGEVKHYNLPWVLMGTSILWIGWYGFNVGSALTVSDVATQAFLITTVAT GTSFVVWMFLDMFIKEKTTMIGLCTGALCGLVGITPAAGYVTVAGAFAIGFICTLASYGF IHVIKPKLKLDDPLDVFGCHGVSGIVGSILTGLFATKIVNPQIENGLLYGGGLHLITAQI LGTLFTIIFVGIMTTIIVLLLKRIIPIRVSKEDELMGLDLAEHGEQADYGIEFEEK >gi|227863426|gb|ACKR01000004.1| GENE 28 31020 - 31778 872 252 aa, chain + ## HITS:1 COG:lin0935 KEGG:ns NR:ns ## COG: lin0935 COG0778 # Protein_GI_number: 16800005 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Listeria innocua # 4 247 2 243 246 142 34.0 6e-34 MIHNETIDTQLNHRSIRKFKDQTLTKEQLETLYSVFGQTPTSMFMQNASLLHVTDPEEKK KIQKLCNQKYVGAEGDLFIFIVDLYRNQQIRKQLDKDDGRVHTTDIFFQAIEDTLLAFQN VANAVESMGLGYVPLGTVNDHPLDLLKTLDLPELTFPVLGMQVGMPDQKPQLKPRLPLKF TCFEGSYKKDFDVKDLKDYDDIVTTYYDLRDSNRRIDSFTKQITGKKLDLHETDRDQLPE ELHKQGLCLDWK >gi|227863426|gb|ACKR01000004.1| GENE 29 32153 - 32560 363 135 aa, chain - ## HITS:1 COG:YPO3717 KEGG:ns NR:ns ## COG: YPO3717 COG3223 # Protein_GI_number: 16123855 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Yersinia pestis # 15 129 14 128 135 65 35.0 3e-11 MKNFNKFTAKSACLLQNLLVVSIGLLGIILIILLFRDLIPLCQSLFSTKIEESNSEIMSE IIVFLLFFEFTAMIISALRHHGHTSINFLLGLGVTALIRSLITSHSNIWSTLATSASILV LVIAMVIFNKNLRNM >gi|227863426|gb|ACKR01000004.1| GENE 30 32701 - 33303 668 200 aa, chain + ## HITS:1 COG:L120883 KEGG:ns NR:ns ## COG: L120883 COG0110 # Protein_GI_number: 15673269 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Lactococcus lactis # 12 189 12 191 203 173 51.0 2e-43 MSLRTKFNYMATGRPYNDADPRLGTLRDLATLKTNNINNENDHAKKEILIKELFGSTGEH PFVNPNFRCEFGQNIHVGDNFYANYDCTILDGAPVYIGNNVLFGPKVGLYTSNHLFDPAE RKAGGCVAHSIGIGDNVWLGAGVSVTPDTIIGRNSIIGAGSVVVNDIPDNVIAAGNPCKV IRKITAADRTGFDPNSGQFL >gi|227863426|gb|ACKR01000004.1| GENE 31 33355 - 33750 467 131 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00483 NR:ns ## KEGG: LCRIS_00483 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 131 1 131 131 247 98.0 1e-64 MKITFTDKALDYLKRREILNKILILIADDGGGKYSIKGGGCAIGSHFSIIYVDKVDPDYP IKLENDQGINIYTSKYDTTMMGPNLVVDYANASLNLKSDEGLLDGGVDIGNGAELIKAQK NVKMTGVEWRC >gi|227863426|gb|ACKR01000004.1| GENE 32 33847 - 34077 368 76 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00484 NR:ns ## KEGG: LCRIS_00484 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 76 1 76 76 87 100.0 1e-16 MTDKSHDPDNFDWLDSIINEETDKRVKNEGPQKKDQTSDDSDNHWFDSIIDAAVEKRTKE NERILHKLKEKENQNK >gi|227863426|gb|ACKR01000004.1| GENE 33 34124 - 34324 222 66 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00485 NR:ns ## KEGG: LCRIS_00485 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 66 1 66 66 109 98.0 3e-23 MFNEENAIDAKDLHVDSFKYQSTEDMPSDAYSSWEEKHPNARVFKLEFRNIGESNEWQEM IIIYTE >gi|227863426|gb|ACKR01000004.1| GENE 34 34467 - 35339 890 290 aa, chain + ## HITS:1 COG:TM0742 KEGG:ns NR:ns ## COG: TM0742 COG0639 # Protein_GI_number: 15643505 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Thermotoga maritima # 21 208 5 166 209 85 32.0 1e-16 MKKIINRTLLDDRVKENYIFISDIHGNLETLDLIKQATADFPEAQLVAGGDYVDGREHVK EVLDYLIEQKSEGAIVLLGNHEQMLLNFAEKQEHQDGIWVYNGGGKSLVSLFGSTVLPDE LRDSEYYRFLKGCPIMYETPHLIFVHAGVRPDEQYNDPETYSEIEYGLKFDYDFYRIWAR DKYWYSDSLLKMMAHNKTGKTIVTGHTPTAALEGKYDDGRQMRRLSIDDCIVRTVQYPGE PARIFTDGGSHSDPLIYPHNDGNVVVLDGMGKIVRVYNWKHPHGTRFENQ >gi|227863426|gb|ACKR01000004.1| GENE 35 35724 - 36470 883 248 aa, chain + ## HITS:1 COG:BS_ywbA KEGG:ns NR:ns ## COG: BS_ywbA COG1455 # Protein_GI_number: 16080890 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 14 241 8 240 444 154 41.0 2e-37 MANSKSSGGLNAFVNKHIMPVAAKIGSFKPLIAVRDGIAMAIPLIIVGSLFMIINSFPVA GWSDWLSKTAVHGISLAQILAKITNGSFGIMVLIAAFGIAWSYANQYKTDGVSAGIVSAA VFFILTPSIMSGDKVPVEGFPYTYLGSRGLFVAIIFGLLSAWIFQWFINHNIQIKMPATV PPAVAKSFSALIPGAAVIAIAGCVYWLFAWIGWGNIHDVIMNILAKPLGALGDTLIGTLV SIILLSLF >gi|227863426|gb|ACKR01000004.1| GENE 36 36510 - 37061 506 183 aa, chain + ## HITS:1 COG:SP0474 KEGG:ns NR:ns ## COG: SP0474 COG1455 # Protein_GI_number: 15900389 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 1 182 262 435 440 139 45.0 2e-33 MQPIWLMQTDANRVLNQAGNLDLAHGGHIVTQPFIDNFVYMGDGGATIGLVLCIGYLVWR KRASKQNKVLAPLTIVPGLFNINEPTMFGLPVVMNLLLIIPFMIAPMLNAITTYCAMNLG LVLLCNGTVIPWTMPPIISVFLATGSIAGSILQVINIILDILIYLPFIAALNKRQLIEED KAE Prediction of potential genes in microbial genomes Time: Wed May 25 06:05:32 2011 Seq name: gi|227863404|gb|ACKR01000005.1| Lactobacillus crispatus JV-V01 contig00005, whole genome shotgun sequence Length of sequence - 21650 bp Number of predicted genes - 21, with homology - 21 Number of transcription units - 11, operones - 6 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 73 - 132 8.2 1 1 Tu 1 . + CDS 323 - 994 841 ## LCRIS_00491 aggregation promoting factor + Term 1035 - 1089 9.1 + Prom 1055 - 1114 11.4 2 2 Op 1 . + CDS 1156 - 2220 1064 ## LCRIS_00492 surface exclusion protein + Term 2236 - 2266 1.0 3 2 Op 2 1/0.000 + CDS 2296 - 2871 613 ## COG0406 Fructose-2,6-bisphosphatase 4 2 Op 3 . + CDS 2878 - 3468 387 ## COG0406 Fructose-2,6-bisphosphatase + Term 3480 - 3527 -1.0 5 2 Op 4 . + CDS 3537 - 4196 819 ## COG1359 Uncharacterized conserved protein + Term 4206 - 4237 2.5 6 2 Op 5 . + CDS 4243 - 4929 441 ## COG0584 Glycerophosphoryl diester phosphodiesterase + TRNA 5117 - 5188 62.4 # Gln TTG 0 0 + Prom 5876 - 5935 3.7 7 3 Op 1 . + CDS 5961 - 8648 2316 ## COG0474 Cation transport ATPase 8 3 Op 2 . + CDS 8648 - 8989 153 ## gi|227876986|ref|ZP_03995079.1| hypothetical protein HMPREF0506_0080 9 3 Op 3 . + CDS 9062 - 10234 1478 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 10247 - 10284 1.2 - Term 10230 - 10277 6.9 10 4 Op 1 . - CDS 10289 - 11278 1003 ## COG0673 Predicted dehydrogenases and related proteins 11 4 Op 2 . - CDS 11265 - 11948 547 ## COG0120 Ribose 5-phosphate isomerase - Prom 11976 - 12035 9.2 + Prom 11917 - 11976 7.8 12 5 Op 1 . + CDS 12101 - 12934 702 ## COG1737 Transcriptional regulators 13 5 Op 2 . + CDS 13263 - 14738 1883 ## LCRIS_00508 S-layer protein + Term 14751 - 14811 10.5 + Prom 14749 - 14808 4.6 14 6 Op 1 . + CDS 14891 - 15211 301 ## LJ1687 hypothetical protein 15 6 Op 2 . + CDS 15235 - 15456 241 ## gi|227876993|ref|ZP_03995086.1| conserved hypothetical protein + Term 15490 - 15526 5.0 + Prom 15556 - 15615 6.9 16 7 Tu 1 . + CDS 15663 - 17030 1609 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases + Term 17056 - 17091 3.0 + TRNA 17152 - 17233 63.7 # Tyr GTA 0 0 + TRNA 17268 - 17339 62.4 # Gln TTG 0 0 - Term 17130 - 17189 17.0 17 8 Tu 1 . - CDS 17379 - 17714 104 ## gi|227876995|ref|ZP_03995088.1| hypothetical protein HMPREF0506_0089 + Prom 17470 - 17529 3.1 18 9 Tu 1 . + CDS 17554 - 19137 1629 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 19143 - 19179 2.5 + Prom 19161 - 19220 2.6 19 10 Op 1 . + CDS 19248 - 20363 921 ## LCRIS_00514 hypothetical protein + Prom 20366 - 20425 6.5 20 10 Op 2 . + CDS 20451 - 21152 673 ## COG2188 Transcriptional regulators + Term 21160 - 21204 7.1 - Term 21148 - 21192 7.1 21 11 Tu 1 . - CDS 21200 - 21586 446 ## COG0615 Cytidylyltransferase Predicted protein(s) >gi|227863404|gb|ACKR01000005.1| GENE 1 323 - 994 841 223 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00491 NR:ns ## KEGG: LCRIS_00491 # Name: not_defined # Def: aggregation promoting factor # Organism: L.crispatus # Pathway: not_defined # 1 223 1 223 223 294 99.0 1e-78 MKIKSILVKSIAVTALSVTGLVAANNNTNTAQAAIVENDTAVVTVKNVSDNAITVYNSYK NPEATGQTLASNTSWKVIKTAYDAKGHKWYDLGKNQWVRAKYVTRGYHTQAAVTQAPVQH QTQTENTNSAATTTAANNTNTQTTTSTVSGSEASAKEWIAGRESGGSYGASNGQYVGKYQ LSASYLNGDYSAANQERVADNYVKGRYGSWTAAKAFWQANGWY >gi|227863404|gb|ACKR01000005.1| GENE 2 1156 - 2220 1064 354 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00492 NR:ns ## KEGG: LCRIS_00492 # Name: not_defined # Def: surface exclusion protein # Organism: L.crispatus # Pathway: not_defined # 1 354 1 354 354 557 84.0 1e-157 MKQKLIVTLLTSVCLMGTASVIHETTPQTVQAAVKGKVQVKGTKKVRLYTNKGKKSKYYA VAKREYSYSAKKYLKLGKKKYLAYKIGNNSQWLLAKNAKLVKKTAATQNYVTATMKMPSG YTKASLLQAYKGKPSASFIQACMKGMEQNDFSRVSSGESKADQKMINLADLSASEQKELA EFSLCLINSARSQLGLKPWVYSSGVESLANSIAQEYEQNGKSIKDGDHYVAGIVRACKKH GLELNDNYVEDMAGFSTNKKIMSMAEMKRNIYFGLKQMIFGFAGAGENQRNDKSLYREWE HAGDLFNTQGSRHDGDYNYYGFSISKTGNIYSMHFISVPSFVVNSSEYNKNFKI >gi|227863404|gb|ACKR01000005.1| GENE 3 2296 - 2871 613 191 aa, chain + ## HITS:1 COG:lin1208 KEGG:ns NR:ns ## COG: lin1208 COG0406 # Protein_GI_number: 16800277 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 1 184 1 185 199 127 40.0 1e-29 MTKTLYLVRHGQTYFNYYHKVQGRCDSPLNERGIRQVEMARDYFKKQGIHFDKAFSSTQE RACDTLEIITDHQMPYTRLKDLREKCYGIFEGRDEFLLPWNYNNPNVDPTMEKDEDVVAR MHRAVVEILSGLEDGQTALVVGHGDILAKFVRDATENKNFGGFGNASIVKLTVDGKKIHF DSYVWPAEGLK >gi|227863404|gb|ACKR01000005.1| GENE 4 2878 - 3468 387 196 aa, chain + ## HITS:1 COG:lin1208 KEGG:ns NR:ns ## COG: lin1208 COG0406 # Protein_GI_number: 16800277 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 1 173 1 177 199 109 39.0 3e-24 MAINLYLVRHGQTWFNKGHRMQGSCDSALTPLGIKQAEAVRDYFQDQGINFARAYCSPQE RASDTLEIIAGPEMEYVRLKELKEKSYGAFEARNVLLWPLHRLGKFRVEDNHEVVERMER GINLIMRDAQDGDNILVVGHGDSLSQYINEKTNHREFLGLPNCSFVQLTSNEGSTLEYVR TEWPAKAVKIDQITGE >gi|227863404|gb|ACKR01000005.1| GENE 5 3537 - 4196 819 219 aa, chain + ## HITS:1 COG:FN1347 KEGG:ns NR:ns ## COG: FN1347 COG1359 # Protein_GI_number: 19704682 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 1 197 1 193 218 63 24.0 4e-10 MDETPIFRITKLNIKENDRGEYIREVENNMHNSIPAEEGTLLIGSAHDDAHGEDNYEIEL FRNSLAEDLHIAAAHADDFAETIDKISTDKEVIELKPEVITTKAHDALNDNADHFVMRLV KVEVKPEDAEKFAHEVKKEMTTSMAAEPGMEIMMSGVNKKNENEWYFVEVYFDDKAYDAH IKSAQYLEYVENTDGMVVRRDVKNLVRDTLATQGAIVLD >gi|227863404|gb|ACKR01000005.1| GENE 6 4243 - 4929 441 228 aa, chain + ## HITS:1 COG:lin1330 KEGG:ns NR:ns ## COG: lin1330 COG0584 # Protein_GI_number: 16800398 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Listeria innocua # 4 226 2 232 235 117 33.0 1e-26 MTQTIIFAHRGLPVKFAENSLQGFKYAATHGAEGVEFDVHLTKDKVPVVMHDETLDRTTN GTGYIKDYTLSEIRRFRLANGEPVPMLSELFEILQGQDLYVNLEFKTNKIHDEGIEAIVL ALAQEYHFVHPIIFSSFNYQTLKNCQRIDPHQQYCFLNKWPVPFPEQFAAKNHFAAIHPH WYLPSKVTQRIWTVDKVSIAKRYFKLGVAGIFTNDFELMNKVKKSQKL >gi|227863404|gb|ACKR01000005.1| GENE 7 5961 - 8648 2316 895 aa, chain + ## HITS:1 COG:L85514 KEGG:ns NR:ns ## COG: L85514 COG0474 # Protein_GI_number: 15673239 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 9 890 21 905 910 766 45.0 0 MAKNKLLINKKTADTEFVKQIARQTPEEALKTLHSSLDGLSSAEAKERLEKNGLNEVATK KHNTKLHFFIESFFTPFTMVLLLLATVSLFTDYVFVPADQKDLSTVIIMIAMIIISGLTS FIQNVKTNDAVEALLNMVSVTTNIRRNQKDEEISTKQVVVGDIINIHAGDMVPADIRLLK TKDLFCSSSSLNGESTPVEKIATKRPDQKDMDQYLDYPDVIYQGTTIVSGSGVGVVLATG EQTVFGRLAKDISNNDVKETNFDVGIKNISKLLLTMTAIIAPLVLVINGLTKGNWLNALL FAIATAVGLTPEMLPVIVTSNLVKGSLEMSKHGTIVKKMNSIQNFGAADVLCTDKTGTLT QNKVVLERHYNLDMKENPQVLRLAYLNSYFQTGMHDLMDQAIIDAASDELDVNEIKHDYT KVDEIPFDFKRRRMSVVVKRHGDGRILVTKGAAEEMLACCNRVQVGSHINDLTDDYKEKV LKHIEDLNKDGLRVVLLAYKNNPAQAGEFNVSDEKDLILTGFLAFLDPPKDDVKDVLKKL KQDDITVKILTGDNAAVTKSVASRVGLNTKYIYSEKDFAGKSDDEVKKMVEECSLFVKLS PESKARIIQILKENGHTVAYMGDGINDTPAMKKADVAISVDTAVDIAKKSADIILLHKSL RTLEHGVRIGRQIFANTMKYIKITLSSNFGNILSILVASSFLPFLPMLPMQLLILDLIYG TSCLSLPFDRVGEKYLEVPRKWETKKLPKFMFFFGPTSSIFDIITFALLYFWICPSTVGT SYVAATPGQKAVFMAIFWSGWFIESLWTQEMVIQALRDPAIPFLQQHSSGVVMLATIGAG LIGTAMPYIPSLAKVMKFGPIPEYYVLVVLVLLTLYIALTTLVKHWYMKKEKFLI >gi|227863404|gb|ACKR01000005.1| GENE 8 8648 - 8989 153 113 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227876986|ref|ZP_03995079.1| ## NR: gi|227876986|ref|ZP_03995079.1| hypothetical protein HMPREF0506_0080 [Lactobacillus crispatus JV-V01] # 1 113 1 113 113 129 100.0 5e-29 MKDYKKILNQLLLICGIISYIFLLLEALPIFQFFYIKSYPVDFTILITDIVLTVALPILS YFQRFRILTIVLAIVLIILLLIKYQAMYPTVTAIYSIYALLIIGFNVHFRYQN >gi|227863404|gb|ACKR01000005.1| GENE 9 9062 - 10234 1478 390 aa, chain + ## HITS:1 COG:SP0035 KEGG:ns NR:ns ## COG: SP0035 COG0436 # Protein_GI_number: 15899981 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 387 1 388 389 360 48.0 4e-99 MVDLTKHMKKGLVEQKPGQILAFAAYTNKISDIVKFTIGEPDFNTPEHIKKAAEASIANN HSHYAPSNGTPGLRKAAADFLAEKYGQKYDPSEILITNGVTESIYDFLTAALNPGDVVLV PTPIFPLYIGDALSMGATVEQIDTSDDDFKLTPDKLQAALDKYGDRVKALVMNYPTNPTG VMYSQDELDALADVVRDKPVFVLCDEIYSELNYDQPHASMEKTLHDQVVLMNGVSKAWAM TGYRIGVVAAPKPILDQLAKIHQAITTTEPTPMQDAAEEALGNGMNDAEPMKKEFQKRRD VLYEGLTKLGFECVKPKGAFYIFAKIPAGLEQDDTKFIYDLAEKRHVAVIAGSFFAKGGA GYIRLSYATSMDQIKEGLKRLEKYVAENKQ >gi|227863404|gb|ACKR01000005.1| GENE 10 10289 - 11278 1003 329 aa, chain - ## HITS:1 COG:CAC3400 KEGG:ns NR:ns ## COG: CAC3400 COG0673 # Protein_GI_number: 15896641 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Clostridium acetobutylicum # 1 326 1 322 322 329 49.0 6e-90 MKTFNWGIIGTGWIAHDMADALNKVNGEIYVAANPNEEALRAFVQEKHVQHAFTNPDEMI KDPSIDIIYIATPHTFHYDYIKKALNAGKHVFCEKAITVNAQQFDEVAQLAKEKHLILME GFTLYHMPIYQKMQDMIKTGKFGEIKMIQINFGSLKDYDPQNRFFNKELAGGALLDIGGY ATAFAISFMDEYPESINTTVKFFETGVDEESGIILKNSKGQMAVMSLSMRAKQPKRGLVS GTKGYFEINQYPRGTEADITYTQSAHEESYDKVTAGDADQALEYEVTDFQKYIEQGHDEG ELEKSRMIAHILTSIRTAWGMTYPFDNEE >gi|227863404|gb|ACKR01000005.1| GENE 11 11265 - 11948 547 227 aa, chain - ## HITS:1 COG:CAC1431 KEGG:ns NR:ns ## COG: CAC1431 COG0120 # Protein_GI_number: 15894710 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Clostridium acetobutylicum # 10 215 14 222 227 114 33.0 1e-25 MKINSISDLALSKIKPKMTISLGGGSNVFKLSQAIAQHNLDITLYSPSELTRFRCKELGL ELLPSTAATKIDIAFDGCDSIDKNFNVLKSLGGIHLFEKQAAQIAKQFILLLPSQRIQPI LNPKIPLCLEVAPPCVNQVQKYLSSLHLTSKIRQDSSVAAFARTPLGNYLIDVFNEDWHN ITELNRQLCLQNGVVSSSLFENLTTSLITEKDGEIIELKRGNNHENI >gi|227863404|gb|ACKR01000005.1| GENE 12 12101 - 12934 702 277 aa, chain + ## HITS:1 COG:NMA1605 KEGG:ns NR:ns ## COG: NMA1605 COG1737 # Protein_GI_number: 15794500 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Neisseria meningitidis Z2491 # 4 271 1 272 282 102 28.0 6e-22 MTKIIDTIYSKLATMSASDQKIAQVILKQPEQVVNYTISKLATEAEVSDASVTRFCHNLD LTGFHDLKIQLAQNATESVSLQNMSRDDASANLELIEKNKVAEIKATLENVTEAKLDQVL HFLTESRIVQVSAEGDTYPVAADAVYKFNQIGLLAIDSGGTIETAIAQTMNLSKKDCLLV ISNSGEAAGIIKQIKVAKQKGMPVIAITNRDDSPIALLADVHLKTAVRQTVMQSQYYFSR VASMTMIEALYLLLIAGDAGRVEHIKEHEAIISNQKI >gi|227863404|gb|ACKR01000005.1| GENE 13 13263 - 14738 1883 491 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00508 NR:ns ## KEGG: LCRIS_00508 # Name: slpX # Def: S-layer protein # Organism: L.crispatus # Pathway: not_defined # 1 491 1 491 491 669 99.0 0 MRKNTRIVSMAAAALLAVAPVAASAVPVNAAISLGTVTNTTGTTSTTTATTAKPTDRSYF TYGNQVIDAASTTDKTANVVPTTISIKAKDTVASVTKAINDLGLVFFSTNNASGEKVNLK DSEVAAILKNAGVTLDKDNKNITAVPTSDFNLTLTGTGSTSTQTATVQIPVVVSGSSSTT DTTQNPVINWSLNGQSKGSVNGQIFQVAVGSQFNPTNFVNSNGEPVIISAVQNSNNNTAA SLEATSNPVNTSEAGRYYNVTLTATGLTGKKTTATYTVLITSSHKQALYANGASSIATYH IYGINVRPASTTFKDGDTVYVADQTRTLNNVSYSQVSTKSKSDANSSNIWVKTSSLVKPA GDTNTKTLPVMVDSRAYDKNGNYLGHMYYAYNDIEIVPTVVTINGKTYYKVANKDEYVRV TNITGNQRTFKHNAYIYWSSYRRTPGTGKMYRGQTVTTYGGQMRFKNGKKYYRIEGCRNN NKRYIKAVNFY >gi|227863404|gb|ACKR01000005.1| GENE 14 14891 - 15211 301 106 aa, chain + ## HITS:1 COG:no KEGG:LJ1687 NR:ns ## KEGG: LJ1687 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 10 96 11 97 283 70 43.0 2e-11 MRRRINRYPRITNDLVFGHVMSNKKNCLELLRRMFPELKLTKVNVITQYDGNIGLESQNI RLDIWAQDDQSRVYDIEMQTTRKNDLEKRMMYYAGISACRRISTTT >gi|227863404|gb|ACKR01000005.1| GENE 15 15235 - 15456 241 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227876993|ref|ZP_03995086.1| ## NR: gi|227876993|ref|ZP_03995086.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 73 10 82 82 102 100.0 6e-21 MNKLEYEMNEVAKRAAEKAIKEAKIVDAKKFIGYAKNHGTNLENTIQETMDMYDEVLNRN EITKLVNEIYQQN >gi|227863404|gb|ACKR01000005.1| GENE 16 15663 - 17030 1609 455 aa, chain + ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 5 450 2 444 454 254 35.0 2e-67 MSKKKIIIVGASHGGQEAAYEILDRYDDVDVTIYEAGDFVSFMSCGMKLFLEGKTTGQDN VRNFTPEDLAERGGKVVNNTAVTALDPAKKTVTVKNVKDGTTKEVSYDKLIISSGVNPAS LPLPGADLKNIMLMRGYDCATEINAAAQDEAIKNVAVIGAGNGIAAAEVFAKAGKNVTLI DGGQKPLENYLNDTYTSLFEKELTDHGVNLAMNTKVTGFVGNGKVNAVQTDKGDITADCV IITVGIKPNTDWLKNTIDLYDNGYIKVDNYFRTNVKDVYAIGDAIFPFSIPANRRVPMPS AIAARHEAQYVVEHLFEDKPERVFKGLVGAQLLEAFDLHAVTTGLSEKNAKRAGINAKET VLKSYLRPDYIPEKDNPTCYIAVVYNEDSHQILGGSVLSSYDISGQANVLSLAIRNKLTL EDLAEADFFFSPTYDKQWSLVNQVAQKALGLKLTV >gi|227863404|gb|ACKR01000005.1| GENE 17 17379 - 17714 104 111 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227876995|ref|ZP_03995088.1| ## NR: gi|227876995|ref|ZP_03995088.1| hypothetical protein HMPREF0506_0089 [Lactobacillus crispatus JV-V01] # 1 111 1 111 111 162 100.0 7e-39 MEFCKTSELVVSPYLLESKVEISFVTEVFIVLVGAALLSLLEQAASTNAAAAVITPEKIH FLRLNLLTFTYFLFNTYILQVYLIRKKFQILFPYNSYNQYVYKNGKKRNVT >gi|227863404|gb|ACKR01000005.1| GENE 18 17554 - 19137 1629 527 aa, chain + ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 14 516 37 547 559 361 40.0 2e-99 MTAAAALVLAACSNNDSNAAPTKTMNTSVTNEISTLDSSKYGDTTSSEVLQNSMEGLYRF NKKNQPELAGATKVERSKDQKVYTFTLRNNAKWSNGDPVTALDYVTAWRRTVDPKNSSLD ADSYAIIKNGEAISQGKAPVNSLGIKALGKYKVQVTLANPIPYLPQILEGAQFYPQNSKL VKKLGSKYGTSSKNLVYNGPFTVSGWTGSNLKWTYKKNPTYWNKKIVDLNKVNVQVVQTP STGVNLFRSGELDYTTLTSDFVKQYQNNSSYHTKVTPTNGYLSFNLKRKSTGNVHIRRAI SRAINKQQLVKTVLHQGKVSNGIVAANFITDQATGNDYRKDAGDLVTYNAKEAKKEWQLG LKQLGKKKLTLELLTSDIDDAKRVGEFIQSNLMKNLPGLTLRVRSIPLKSRLSNTTNHNY DFVYGTWQPSYEDPIDFLTVGGLFNLAPDYHNANFWKQIDLARSTYATDPQKRLNALVNA EKQLIQKDAFAAPLFQQGTSYLLNKRVKGFQLSPYGNVAYYWNVKMK >gi|227863404|gb|ACKR01000005.1| GENE 19 19248 - 20363 921 371 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00514 NR:ns ## KEGG: LCRIS_00514 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 23 371 1 349 349 667 99.0 0 MARIIRVGGSSSSVSWHEALKDLRADDVLMLGPGYYYLPQGITLTDITIKGTGSLPEDTT IYGYISVSEDSRYVTLENLCIDTTTEHNSLAVPVGVDGYLTLRNCFIKGTGTDTAAIAVN GKITLELYSTKIVNGSVSMYDHANFRLEMNDSEIDYFSDKYCALAIEGEGTAIVNNSKIH GSINTFAKTNAELDLNNSEVDYVLLHGQTWMNMLNSKVKSASDSCLYLSDDCWSNIMNST FLGGVYIDKKTRTIIQNSTINRMIVVDEAKVTMNNAVILAHADFQDQAKCDATRVTFTGN MNYEYFLALSGEANMKGHNIVLNPNQANLAVKDEAKFSASVVANDNEQVEVEYNKRPNVY ILGVKWTAKKK >gi|227863404|gb|ACKR01000005.1| GENE 20 20451 - 21152 673 233 aa, chain + ## HITS:1 COG:SP1446 KEGG:ns NR:ns ## COG: SP1446 COG2188 # Protein_GI_number: 15901296 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 4 229 6 230 235 223 50.0 2e-58 MEEPMYIKIHNQIKRDIENHVYQVGDRIPAERQLAVKFGVSRMTLRQAIKTLEDEGILER RLGSGTYVASQKVQEKMSGIMSFTEITKANGQVPSSKLISYQIGNPSLSEKERLALKDNE NVLRMERIRYADKTPICYEVVTVPYYLVKNFSKEDVSTHLYKTLEKRGGFAIGRVTEHIS ASIANEQDARLLKAKKGEPLITRRQVTELADGQPFEYTRARYVAERFEFTFSK >gi|227863404|gb|ACKR01000005.1| GENE 21 21200 - 21586 446 128 aa, chain - ## HITS:1 COG:lin1076 KEGG:ns NR:ns ## COG: lin1076 COG0615 # Protein_GI_number: 16800145 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Listeria innocua # 1 128 1 127 127 188 73.0 2e-48 MKRVITYGTFDLLHYGHVRLLKRAKELGDYLIVGLSTDEFNEFKKHKEAYNTYPERKYIL EAIRYVDQVIPEKDWDQKITDVQKYHIDTFVMGDDWKGKFDFLKPYCDVVYLPRTPGIST TKIKEDLK Prediction of potential genes in microbial genomes Time: Wed May 25 06:06:21 2011 Seq name: gi|227863371|gb|ACKR01000006.1| Lactobacillus crispatus JV-V01 contig00006, whole genome shotgun sequence Length of sequence - 35872 bp Number of predicted genes - 32, with homology - 31 Number of transcription units - 19, operones - 5 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . + CDS 816 - 1907 999 ## COG0438 Glycosyltransferase 3 1 Op 3 5/0.333 + CDS 1976 - 3472 1632 ## COG1488 Nicotinic acid phosphoribosyltransferase 4 1 Op 4 . + CDS 3469 - 4299 1066 ## COG0171 NAD synthase + Term 4431 - 4473 9.6 - Term 4383 - 4414 0.1 5 2 Tu 1 . - CDS 4466 - 4702 61 ## - Prom 4797 - 4856 3.5 + Prom 4420 - 4479 6.0 6 3 Tu 1 . + CDS 4659 - 5810 783 ## COG0675 Transposase and inactivated derivatives + Term 5943 - 5984 -0.9 + Prom 5862 - 5921 6.5 7 4 Tu 1 . + CDS 6000 - 8669 2637 ## COG0474 Cation transport ATPase + Term 8688 - 8730 6.1 + Prom 8674 - 8733 9.1 8 5 Op 1 . + CDS 8760 - 9914 725 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 9 5 Op 2 . + CDS 9916 - 11346 1215 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 10 5 Op 3 . + CDS 11349 - 12047 768 ## COG3774 Mannosyltransferase OCH1 and related enzymes + Term 12055 - 12090 3.1 11 5 Op 4 . + CDS 12107 - 12565 430 ## COG3091 Uncharacterized protein conserved in bacteria + Term 12733 - 12769 4.0 + TRNA 12642 - 12726 55.5 # Leu AAG 0 0 + Prom 12644 - 12703 80.3 12 6 Op 1 . + CDS 12812 - 13459 561 ## COG1705 Muramidase (flagellum-specific) + Term 13467 - 13498 2.1 13 6 Op 2 5/0.333 + CDS 13545 - 15791 2386 ## COG0210 Superfamily I DNA and RNA helicases 14 6 Op 3 4/0.333 + CDS 15826 - 17832 1896 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 15 6 Op 4 . + CDS 17866 - 18993 1234 ## COG4851 Protein involved in sex pheromone biosynthesis + Term 19032 - 19068 0.2 + Prom 19012 - 19071 4.0 16 7 Op 1 . + CDS 19113 - 19313 274 ## lhv_0553 Glu-tRNA(Gln) amidotransferase subunit C 17 7 Op 2 21/0.000 + CDS 19313 - 20752 364 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 18 7 Op 3 2/0.333 + CDS 20757 - 22187 1914 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 19 7 Op 4 . + CDS 22212 - 23132 1111 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase + Term 23172 - 23220 8.6 - Term 23160 - 23209 8.2 20 8 Tu 1 . - CDS 23246 - 23668 272 ## FI9785_309 hypothetical protein - Prom 23697 - 23756 7.3 + Prom 23585 - 23644 8.8 21 9 Tu 1 . + CDS 23840 - 24505 392 ## LJ0238 hypothetical protein - Term 24475 - 24530 15.5 22 10 Tu 1 . - CDS 24541 - 25251 915 ## COG0670 Integral membrane protein, interacts with FtsH - Prom 25282 - 25341 8.5 + Prom 25110 - 25169 4.7 23 11 Tu 1 . + CDS 25413 - 25760 404 ## LCRIS_00548 hypothetical protein 24 12 Tu 1 . - CDS 25735 - 26043 109 ## LCRIS_00549 putative protein without homology - Prom 26090 - 26149 3.6 - Term 26629 - 26690 14.3 25 13 Tu 1 . - CDS 26700 - 28073 1505 ## COG1757 Na+/H+ antiporter - Prom 28308 - 28367 6.8 + Prom 28366 - 28425 5.8 26 14 Tu 1 . + CDS 28471 - 29505 823 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 29515 - 29557 -0.7 + Prom 29507 - 29566 6.2 27 15 Op 1 . + CDS 29589 - 30938 1574 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 28 15 Op 2 6/0.333 + CDS 30941 - 31441 457 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 31442 - 31471 -0.2 + TRNA 31532 - 31621 66.4 # Ser TGA 0 0 + TRNA 31626 - 31699 68.6 # Asp GTC 0 0 + TRNA 31706 - 31781 64.8 # His GTG 0 0 + TRNA 31786 - 31858 86.4 # Val TAC 0 0 + Prom 31834 - 31893 32.2 29 16 Tu 1 . + CDS 31929 - 33395 1663 ## COG0477 Permeases of the major facilitator superfamily + Term 33406 - 33441 0.1 30 17 Tu 1 . - CDS 33438 - 33950 540 ## COG1309 Transcriptional regulator - Prom 33996 - 34055 6.8 + Prom 33955 - 34014 7.4 31 18 Tu 1 . + CDS 34056 - 34991 974 ## COG4716 Myosin-crossreactive antigen 32 19 Tu 1 . + CDS 35094 - 35828 929 ## COG4716 Myosin-crossreactive antigen Predicted protein(s) >gi|227863371|gb|ACKR01000006.1| GENE 1 74 - 805 829 243 aa, chain + ## HITS:1 COG:lin2665 KEGG:ns NR:ns ## COG: lin2665 COG1922 # Protein_GI_number: 16801726 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Listeria innocua # 3 243 5 241 244 191 42.0 8e-49 MSKVNILGVDFDNKTFNQFQNEFINRLNNHLSTFIVTANPEIVMAANENPEFMKILKNDP DYITADGIGIVKAAKMLKQPLPERVTGYDLFTWLMDVANDRGSRVYLIGAKPQVIHAVQS KIAKEYSNINLVGAEDGYFTEDLELVARRIQKAQPDMVFAALGFPKQEKLLSILRKNETP ALMMGVGGSFDVFSGIVKRSPEAFQKTHLEWFYRLITNPSRFKRMLVLPQFVVRVKQSKK KGK >gi|227863371|gb|ACKR01000006.1| GENE 2 816 - 1907 999 363 aa, chain + ## HITS:1 COG:PH1844 KEGG:ns NR:ns ## COG: PH1844 COG0438 # Protein_GI_number: 14591592 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Pyrococcus horikoshii # 18 359 36 374 381 94 27.0 3e-19 MKVLHVNAGLENGGGLSHIVNLLTEAKNEGKDFELLTLAEGPVAQAARAAGITTHVLGAN SRYDLGSLGRLTKFINEGHYDIVHTHGARANLFLSLIHKRIRAAWCITVHSDPYLDFEGR GIIGNIFTKLNLRALRKADCIFVVTQRFARLLINRAHVDKNKVHVIYNGIFFHSDSEIPA KYEHTYFNIINVARTEKVKGQELLLKAVKKLDDQHIRLHIAGDGSQLEALKALTRQLDMA PQVTFHGFMTQHQLSGLYKRIDLAVLTSYSESFPLVLLEATDNLIPILSTDVGDIHKMIP GPEYGFIAKTGDIDSIAKEINLAVNKTHEELRQMANTEKRYAEEHFSIKNQLDSIEKVYL TLR >gi|227863371|gb|ACKR01000006.1| GENE 3 1976 - 3472 1632 498 aa, chain + ## HITS:1 COG:L107468 KEGG:ns NR:ns ## COG: L107468 COG1488 # Protein_GI_number: 15673082 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Lactococcus lactis # 10 491 7 487 495 674 68.0 0 MTEREAMFYPELAKDDSLALHTDLYEINMMYTYFKKGIADRNAVFESFYRREPFGNGYAV YAGLEHIINYLKNLKFTESDLQYLKENEGYDDDFIDYLRNLKLKLTIRSMKEGELVFANE PILQVEGPLAQCQLVETAILNIINFQTLLATKAARIKLAVKDDGLMEFGSRRAQETDAAI WGARAAYIGGFDSTSNVRAGKLFGIPISGTHAHALVEAFGSEYDAFKAYAETHKNCVFLV DTYDTVRSGVPNAIKVANEMGDKINFLGVRIDSGDMAYISKQVRKELDDAGYPDAKIFAS NDLDENTITNLKMQGAKIDVWGIGTKYITAYDQPALGAVYKLVAMEDELGAMRDTLKISS NAIKVSTPGKKQVWRISANTAKKNEGDWVSRYNEDPRKFDALFMFHPQYNYINKVVTDYT AIPLLHDIFKDGKLVYDQPSLDEIKKFCADNLDGLWDEYKRSLNPQEYPVDLSQNLYESK MDLIQDIRRKIRERSIGR >gi|227863371|gb|ACKR01000006.1| GENE 4 3469 - 4299 1066 276 aa, chain + ## HITS:1 COG:SP1420 KEGG:ns NR:ns ## COG: SP1420 COG0171 # Protein_GI_number: 15901273 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Streptococcus pneumoniae TIGR4 # 4 275 3 274 274 371 68.0 1e-103 MRELQKEIIAYEHVLPEIDPKKEIRRSIDFLKDYLKANPFLKSYVLGISGGQDSTLTGKL CQMAIEEMREETGDDSYQFIAVRLPYGVQADAQDAADAVAFQKPDQDLIVNIKEPVDAMV KVVEATGQKITDFNKGNIKARQRMVVQYAIAGANKGAVVGTDHAAENFSGFYTKFGDGAA DLTPLFRLDKRQGKALLKELGCPKHLYEKAPTADLEEEKPDLPDEVALGVTYQEIDDYLE GKEVSDKTADQIEKLWNKSKHKRHLPVTVFDDFYKK >gi|227863371|gb|ACKR01000006.1| GENE 5 4466 - 4702 61 78 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVLFGFSSATCVLIIYFTSNANINLAKDETKTSEQNIKFLAAANLFLCFIFLIKLTASFS IYCYQILSFSQSLFPPQK >gi|227863371|gb|ACKR01000006.1| GENE 6 4659 - 5810 783 383 aa, chain + ## HITS:1 COG:TM1044 KEGG:ns NR:ns ## COG: TM1044 COG0675 # Protein_GI_number: 15643802 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Thermotoga maritima # 1 379 4 370 405 120 27.0 6e-27 MIKTQVAELKPNKTMQRELDRLCDYRRYCWNLALETWQDMYEARTLNKDNNPSPNECRVR DELVNNKADWQFALSARCLQLAVKDLANAWKSFFDKAQLDWGKPHFKSKKAPRQGFKTDR VKVINGKLRLDKPREIKSWFDIPTYEALRMKQVKIASIFRERGHYYAALSYEEKAGIKVK TGKKTAIDVNVGHFSYTEGRINILPARLQKLYKRIKHYQRILAKKKRVNGKLAGRSNNYV QVRTKLQRDYRRAFNIQNDLLQKFTTELANNYDQIVIEDLNVKQMMMTHVASKGIQRSLF GKFRQILSYKCAWYDKELILADRSYPSTQRCASCGYVKNGADKITLQGNRKHGTKHNEYV CYECGYSNDRDDNAVLNLLALTK >gi|227863371|gb|ACKR01000006.1| GENE 7 6000 - 8669 2637 889 aa, chain + ## HITS:1 COG:SPy0623 KEGG:ns NR:ns ## COG: SPy0623 COG0474 # Protein_GI_number: 15674699 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pyogenes M1 GAS # 3 889 8 889 893 982 60.0 0 MAKKYYVESIPDIEKDLNTSVKDGLSASDAKARLEQYGPNALASKKKQSMFMRFIDQFKD FMIIVLIIAAILSGVLAHEWTDAAIIMIVVILNAILGVFQEARSEAAIDALKEMATPDAH VRRDDTIVTIPSTELVPGDVVLLEAGDVVPADLRLNQAHSLKIEESALTGESVPVEKHAE TLEGEDIALADRVNMAYSNTNVTYGRGEGIVTSTGMHTEVGKIATMLNNADETDTPLKRN LNQLGKTLTIMILAICVIVFIVGVLKADPAERNSTLMINMFLVAVSLAVAAIPEGLPAIV TIILALGTQTMAKHKAIVRKLPAVETLGATDIICSDKTGTLTQNRMTVEKVFYDKKLHDN SESISENNPALLAMTLANDTKIENGGDLLGDPTETALIQFAFDQNIDVTDLLEKYKRIQE VPFDSERKLMSTVNKDGEQYFVAVKGAPDMLLQRVTRIENGGQVEPITDKQKQNILAQNK QMAQQALRVLGLAYKKVDQLYTDLTTDNVEQDLIFAGLVGMIDPERGEAKAAVAEAKSAG IRTVMITGDHQTTAQAIAERLGIIEKGQDSRVLTGAELDKLDDEYFKQHVGDYSVYARVS PEHKVRIVKAWQANDKIVAMTGDGVNDAPSLKQADIGIGMGITGTEVSKGASDMVLADDN FATIVEAVKQGRKVFSNIQKAILYLMSCNVGEVLTVFMMTMLGWDILAPVQLLWINLVTD TLPAIALGVEPVEVGIMKRKPRGKKSNFFSGGVASSIIYQGILEGILVLGAYQIGLHVGP HVGDPSLQHGDALTMAFLTLGLIQLFHAINSKYVHQSIFRPHTFSNKWFNGAIIIAAVIM AAVELPFMTKFFDVTELDGPQWLVILIAGILMVLIVEIVKFCQRKMGKE >gi|227863371|gb|ACKR01000006.1| GENE 8 8760 - 9914 725 384 aa, chain + ## HITS:1 COG:MTH365 KEGG:ns NR:ns ## COG: MTH365 COG1887 # Protein_GI_number: 15678393 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Methanothermobacter thermautotrophicus # 81 369 115 399 409 114 27.0 3e-25 MKSFLFRLYLAWMSFLARFTTMENNNVVILNGSGRSGSNGYAFYKWLQLNHPEYNVTLVE PWPSSHLKWKTWQKIGAARYVITTHQPFKVRKHQINVQLWHGVPLKRMGIMANNTKRRDN RRNEKLWHKNADIVASSSDLYESLMSACMAIETKKYRKLGFPRLDLLAKPVISKKQLLAD LFKTEDDQAQIGIYMPTFRYELEDKSIMEKIKERNFFAFRDFDVEKLNTELKKRHQYLIV KLHPYEMRLFANFKSSYSNIAFMNNDYLFDHNYDLYELLGDTDFLMTDFSSIYFDYLHLN KPIVFVTNFLEQYEKTRGLLMGPYAEITPGICVNSEDELIRNLDQLDNQQIANRRLYWLH LTNQVHGDSYCENVFKYMTQEYRG >gi|227863371|gb|ACKR01000006.1| GENE 9 9916 - 11346 1215 476 aa, chain + ## HITS:1 COG:SA0127 KEGG:ns NR:ns ## COG: SA0127 COG2244 # Protein_GI_number: 15925836 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 7 471 9 473 476 135 24.0 2e-31 MRKTFLNILYNAVYQIFIVLVPLITVPYLSRVLGPKTYGIYSSVNNTVQFLMIFCILSVS YVGMRTISRTRTYGTPQELTNAFWGLWYFQGIAGIITILVTVFVATVFHVQYWFYILLMV PYLISAQVDISWFFQGLADFGRVVLKNMAVKLVSVVLILLWVKSPADLWKYLLIMSVSTM LGSFVFWFDIWRYVGKPVAHFYKFKQTAIAIGTLMIPQIATQIYTSLDKPILGWFSNSTQ VSFYDNSQRISNMILGVITSISLVIMPKMASEGKKAQKIVMKKSLEATVMLGTLFAVIIM ANTKQFVPFFFGNKYVPMTPLMFWFTLTIIMIPTGGVLANQFALANQRDKDYAVPVVIGA ILEIVLSYLLDRPYGAVGAMIAILITEAVVLILRLWVVRDGYEFSYVFHDVPKYLLIAVL TLAIGMFMPNIIPSAFFNMAFKSIVMLIIYLTLMFLFKLDFNDDIVKLIKNFLKRG >gi|227863371|gb|ACKR01000006.1| GENE 10 11349 - 12047 768 232 aa, chain + ## HITS:1 COG:FN1241 KEGG:ns NR:ns ## COG: FN1241 COG3774 # Protein_GI_number: 19704576 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannosyltransferase OCH1 and related enzymes # Organism: Fusobacterium nucleatum # 1 159 1 157 243 134 45.0 1e-31 MIPKKIHYVWVGHNPKSPIIEECIATWKKKLPDYQIIEWNEDNFDMHENRYIEQAYAAKK WAFVSDYVRARAIYEQGGIYLDTDVRVVDKLDSLLNASAFIGFENHDYLSAAIFGAEKGH PFMQDILDYYQDRDFEYDTKNQMAGVNSISVTEMLVNKYGLKLGNQEQVLKDGIHVYSDG VLCNPSKDSKSIHLFTGTWMDGKKSFKHDLVTFLKRHISTPKQAGMYAKIFR >gi|227863371|gb|ACKR01000006.1| GENE 11 12107 - 12565 430 152 aa, chain + ## HITS:1 COG:BS_ydcK KEGG:ns NR:ns ## COG: BS_ydcK COG3091 # Protein_GI_number: 16077546 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 146 1 146 150 139 47.0 2e-33 MNENELQNLVEEISIKYFDRPFKHRVKINRRMTTTGGRYHLDDHHLEINAHFLVPQYHDY LVGIIKHELTHYHLHLLGLGYRHRDRNFKILLKKVGGSRYAPDIGLRKKKKYRYLYLCEN CGLRYPRMRRINTQKYRCGKCRGHLRLAQTFA >gi|227863371|gb|ACKR01000006.1| GENE 12 12812 - 13459 561 215 aa, chain + ## HITS:1 COG:L2183 KEGG:ns NR:ns ## COG: L2183 COG1705 # Protein_GI_number: 15673347 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 1 215 1 205 209 168 43.0 6e-42 MARKRKSRVPKSVKTVVRVFVILFILMVAFVGFRYYRRYAIQSEQIRQAQLQKEQEAAKL LKQKKDFIKKIGPIAREVDKSYDLLPSITIAQACLESNYGQSDLSQKYNNLFGVKGSNPN TSAVMTTKEYVKNKWVTVKARFQIYDSYEASIRAHARLFQNGTTWNHDQYKHVLASKDYK TQAKALVTDGYATDPDYADKLINLIEQFDLEKYDK >gi|227863371|gb|ACKR01000006.1| GENE 13 13545 - 15791 2386 748 aa, chain + ## HITS:1 COG:SP1087 KEGG:ns NR:ns ## COG: SP1087 COG0210 # Protein_GI_number: 15900955 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Streptococcus pneumoniae TIGR4 # 5 747 3 761 763 744 51.0 0 MSEKSILAGLNPQQKEAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAI TFTNKAASEMREREQKLLGPAANDIWMSTFHALCVRILRRDADKIGYGHNFSIADSAEQL TLVKHIEKDLNINPKMYDPRGILAAISNGKNDLLDPEAFMQSASSPFEKMAAKVYEEYQR RLRRDQIMDFDDLIMQTLVLFKKDSEVLHYYQNKFRYLLVDEYQDTNQAQYELCHALAAQ YKNICVVGDADQSIYGWRGANMENIMNFEQDYKKYDVKTVKLEQNYRSTGHILSAANSVI KNNQNRKAKNLWTDQGDGQKVTYYQAQSGDDEAHYIISKIQEEVKDKKRAYKDFAILYRT NAQSRTVEEAFVKSNIPYQIVGGHKFYDRKEIKDVMAYLKLVANPADTMSMNRIINTPKR GIGAATVDKLITFADENHYNILDAMGHVAESSINTRAAKKLSDFGTKLRDAITYAQNGTV TGLTEKILTDFDYTDALRAENTIESETRLENLDEFLSVTKRFDDHYEPEEDESNPLSDFL AEVSLLSDQDDLDEDDNQVALMTLHAAKGLEFPVVFLIGMEYGLFPLQRAMMDDNELEEE RRLAYVGITRAKQELFLTNAYSRMMYGRMQNNPPSRFLDEIDEQDLHKEENEKLQSSFIQ SSFEKQTAPFARKAERARAEVYTAKKASGAIGAEKKGWNVGDQVEHKAWGHGVVTKVNGT GEDMELDIAFPGKGIKRLLAAFAPIKKV >gi|227863371|gb|ACKR01000006.1| GENE 14 15826 - 17832 1896 668 aa, chain + ## HITS:1 COG:SPy0751 KEGG:ns NR:ns ## COG: SPy0751 COG0272 # Protein_GI_number: 15674800 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Streptococcus pyogenes M1 GAS # 10 661 2 647 652 640 51.0 0 MAEITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVTP DSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRMQKLVGHPVEYNVELKID GLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPEPLTTEVRGECYMSKEA FAKLNAEREEQGLAVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEEITSQHQA IQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKIDDLGIEQELGN TVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVARASLHNPD YLNEKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSVAYQIPTTCPSCGQKLVHLEDEV ALRCINPSCPAQVEEGITHFASRPAMNIAGLGPKIVKQLIAKDLVHNVADLYHLTADDLA QLDHFKEKSINNLLTALDNSKQNSVELLITGLGIDHVGAKAARLIAQKFKNLAKIMSLDV QEIASIDTIGMTIAESMTTYFAQPEAQKVIDELRESGLNMDYLGADEPAEIEDNPFKDKT VVLTGKLEHYTRSEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTE EEAIAQIE >gi|227863371|gb|ACKR01000006.1| GENE 15 17866 - 18993 1234 375 aa, chain + ## HITS:1 COG:lin1869 KEGG:ns NR:ns ## COG: lin1869 COG4851 # Protein_GI_number: 16800935 # Func_class: R General function prediction only # Function: Protein involved in sex pheromone biosynthesis # Organism: Listeria innocua # 1 372 6 370 371 238 38.0 2e-62 MALAGIALTLSGCGKLKDSSLANNATTTSTTKKKSYQTTNTGTNGYTVLMKNGRYNISPI AGLTATDNDNSVDTRELERGLIQISKNQFSPNQYVFQEGQYLDTSTVTDWLMRKSKSNPD GLNPVNNGKTGTDTRNPIYLEEIIEQDYLTGSGSKYNLGGMSLGLAMNSVDYYQKKRNGA EFQTTISRAEQKAQGEKIANEIVARLRKKKALKNIPITIGLFSKTGKDSLVGGTYFAYGT AAANSSKISKWKSMSEKMQVLPTTGSEKAINSDDASHFNDFKTAIQNYFPNISGVTATLR YTNGKLSQENISVTTQFYGYEQIQSFTRLVLSSAKKYLSGNIPIEIKIGSVDDVQALVAK ETGDSDYQVHVYGGE >gi|227863371|gb|ACKR01000006.1| GENE 16 19113 - 19313 274 66 aa, chain + ## HITS:1 COG:no KEGG:lhv_0553 NR:ns ## KEGG: lhv_0553 # Name: not_defined # Def: Glu-tRNA(Gln) amidotransferase subunit C # Organism: L.helveticus # Pathway: Aminoacyl-tRNA biosynthesis [PATH:lhe00970]; Metabolic pathways [PATH:lhe01100] # 1 66 46 111 111 110 96.0 1e-23 MADQLSEVDTEGVDETVQVVDRDTVFREDKPEHWQGQDRETLMANVPEKANGYIKVPVII NKDEDE >gi|227863371|gb|ACKR01000006.1| GENE 17 19313 - 20752 364 479 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 63 448 72 436 468 144 31 6e-34 MNYLNENIDSLNKKLASGDLSADKLAKDTVANIKDTDKKLNAWITVLDDAKPADNLDYSK SKLAGIPIAIKDNIITNGIKTTAASHILYNYMPMYDATVISKLKKAGVTFVGKTNMDEFA MGSSTEHSYYGATHNPWNLDKVPGGSSGGSAAAVASGQVVAALGSDTGGSIRQPAAFNGI FGIKPTYGRVSRWGLIAFGSSLDQIGVMTKRVKDSAEVLNVIAGADEHDSTVSTREVPDF TKFIGQDVKGLRVAVPKEYMEAVDGKMREVIQKQIDALKDAGAVINEVSLPHTKYVVPDY YIIASSEASSNLQRYDGIRYGYRAKDTKNLLDVYVKSRSEGFGAEVKRRIMLGSFALSAG SYDRFFRQAAKVRTLICDDFDKIFAENDVIVGPTTTEPAFGIGEEVSDPIKMYNNDILTI SANLAGIPAASVPAGLVDGMPVGLQVMAKRFDEGNVFKTADFIERTNKFYEKTPTGMED >gi|227863371|gb|ACKR01000006.1| GENE 18 20757 - 22187 1914 476 aa, chain + ## HITS:1 COG:BH0667 KEGG:ns NR:ns ## COG: BH0667 COG0064 # Protein_GI_number: 15613230 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Bacillus halodurans # 1 476 1 476 476 580 61.0 1e-165 MNFKSTIGLEVHFELKTKSKIFSPSPVTYGAEQNTETNVIDWAMPGTLPMVNKNVYRLGI MVAIATHAHILPTTHFDRKNYFYPDNPKAYQITQFFQPLARDGYIEVEVRGKKKRIGIHE MHIEEDAGKNTHGTNGYSYVDLNRQGVPLLEVVSEPDMEDPEEAYAYLEKLRKIVQFTGA SDVKMEEGSMRVDTNISIRPAGQKELGTKVEMKNLNSFDHVRRSLAYEEKRQEQVLLAGG HIQLSTRRFDEATGKTVLERVKEGASDYRYFPEPDIAPDHISQEWIDEIAKELPKGPFAR YDDYVNKYGLKPYDANVLLQTKESSDFFDEAVAAGADPTLAANWMNTQVNGYLNDHRIEL KDIKLTPEHLAEMIKLIKDGTISSKIAKKVFAETIENGTDPKKYVEDNGMVQLSDTSVLA PMVKKVVDDNPQSVEDFKNGKDRAIGFLVGQIMKQTRGKANPKMVNKLLNQELQSR >gi|227863371|gb|ACKR01000006.1| GENE 19 22212 - 23132 1111 306 aa, chain + ## HITS:1 COG:L26628 KEGG:ns NR:ns ## COG: L26628 COG1597 # Protein_GI_number: 15672402 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Lactococcus lactis # 4 304 3 302 342 332 55.0 7e-91 MTRKARLIYNPVSGHEQMPKNVADILDVLEQAGYEASAFRTTPEENSARNEATRAAKEGF DLIVAAGGDGTINEVVNGIAFLENRPKMAIIPAGTTNDYARALAIPRDNIPDAAKVILKN KTRKMDIGKAVFGDKIQYFVNIAASGSLTELTYGVPSEVKSALGYAAYLIKGAEMLPHLT ENEMRLTYDDGVYEGKLSMFLLGMTNSIGGFEQVMPDAQLSDGLFQLIVVKPSDPVSMMK LMALALNGKHVDDPNIIYTKTRSLKAELIGKSEGQDLPVNLDGEIGGYCPVEFNNLQQHI EFYVGG >gi|227863371|gb|ACKR01000006.1| GENE 20 23246 - 23668 272 140 aa, chain - ## HITS:1 COG:no KEGG:FI9785_309 NR:ns ## KEGG: FI9785_309 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 18 140 6 127 130 98 48.0 8e-20 MFNQNKIIIFNNRKNNCSKNYTLPMHDQKLLKQFQSSLLDDITYYPFHPLRHINKTFVRF ISTSGKPLFNDFVYHLQTRELILNDLILISYKYLVRNKANIAYSDLRKNWVNVFNLSFCT NDIKFNKEALLNKINEANKM >gi|227863371|gb|ACKR01000006.1| GENE 21 23840 - 24505 392 221 aa, chain + ## HITS:1 COG:no KEGG:LJ0238 NR:ns ## KEGG: LJ0238 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 2 204 3 205 210 221 55.0 1e-56 MDIRVTNTKNRLVEALLTCLEEKSVYELKVKDIIEVSGVSTRTFYQYYADVNSLVADVEN DFIEGYKDSIRRDRESLANIDMTLPTQDQLKAVLSATKNTISYCFDHKREIQLLLSDNGD IRFYNLIFDTSCDEFFERINSMDDSQGIKLTGKERIAMLIDVQVFINSMIDLVRVLLNYS DRLSPYDMRENIMAFLHKTPLNELTSFLKKDKKSSNKNSVD >gi|227863371|gb|ACKR01000006.1| GENE 22 24541 - 25251 915 236 aa, chain - ## HITS:1 COG:SPy0358 KEGG:ns NR:ns ## COG: SPy0358 COG0670 # Protein_GI_number: 15674509 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Streptococcus pyogenes M1 GAS # 14 230 9 226 229 117 40.0 2e-26 MDNFSNTPGRRQVQDISAVNSFLTKMYSLMILAVLVSAATAFLTTTVFASAIANMSQAVY WIIIFVPIVLCMTISFKAAKNPTLGLVLLLILSAVYGFEFAFIAGAFTTASIAGAFLSAA GVFAAMAIFGTVTKRDLSNWGSYLGAALIGFLVAWLVNAFFIRSGAATFIFSCIGVLLFT GLTAYDAHNAKKIYMTYGGQVSDTGLAVMGALNMYLDFINIFMFLLQIFGMGGNRD >gi|227863371|gb|ACKR01000006.1| GENE 23 25413 - 25760 404 115 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00548 NR:ns ## KEGG: LCRIS_00548 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 115 1 115 115 163 86.0 2e-39 MKKRYIDDDVRGQRSEHPDKIGEFNRKMILSFTKAAADKYHQLTSSQKAFIDRELDDLKF NQNSTINKKVNAELDQAIVFERNDHEIIVTDIIAQPTRDSQEYRRAQIRMDRQNH >gi|227863371|gb|ACKR01000006.1| GENE 24 25735 - 26043 109 102 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00549 NR:ns ## KEGG: LCRIS_00549 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 102 121 222 222 149 93.0 3e-35 MAIYALAVIFLTYLICIAQKVFNMNHWLKSIHFLAFYAYRAFLANVFWDRIFWQYFNFKQ LALQNIYLAVLLLWICTWCASYLSVYVIHQLWLKINDSVDPS >gi|227863371|gb|ACKR01000006.1| GENE 25 26700 - 28073 1505 457 aa, chain - ## HITS:1 COG:BS_nhaC KEGG:ns NR:ns ## COG: BS_nhaC COG1757 # Protein_GI_number: 16078033 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Bacillus subtilis # 3 445 4 449 453 293 37.0 3e-79 MKKEKISFTESIIILIALLAILGIAVIKFSLSPEVPVLFTVLLLTFWARLRGFSWQDVQD GIKEGIGVAIIPIFIFILIGALIGIWIKAGIIPSIMVLGFHLISGSFFVPSVFIVCSIIG MAIGSGFTTISTVGIALFGIGTSMNINPALVAGAIISGAVFGDKMSPLSDSTNLSSAVAE SELFAHIKNVMWSTIPAFIVSLILFWILGNSGHMDLTKIEHTSRILQANFSITWWALIPI ILMIFCAWRKIPAIPTLFMNIAVTVIMIFIQSPHESIQSLNNLVMNGFVAKTSDKAVDAL LTRGGISSMMATVALIISTLSLGGMLMKFNVIQSAMEPLVKHLKKPGRLITVTILSGICI NLFVGEQYLSVILPGRAFKPAFDKIKLSPLALSRVLEDGGSVINYLIPWGVAGSFAASTL GVPVLQFLPFVFFSLLSPIFSILSGITGIGLKWVKEK >gi|227863371|gb|ACKR01000006.1| GENE 26 28471 - 29505 823 344 aa, chain + ## HITS:1 COG:BS_pbpX KEGG:ns NR:ns ## COG: BS_pbpX COG1680 # Protein_GI_number: 16078758 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Bacillus subtilis # 35 334 81 384 391 79 24.0 9e-15 MHKKRALSIFLALCAFAIFLFIVQPGDKLDNGIKNQKEQLHDYMKFHHINGVMLINDKKG QPIVVQNKETTDSSQIVNANQLFPIASLQKIMTGTAIYQLQQEKLLGWNTSLSNYYPQVS GSKDITIHGLMNHTSGLVNNARPSSPLKNQKEQIAYMLNHMENDHLHTWDYQDVDYELLA AIISKQTNLSYNAYIQTDFAKPLKLQKVKDFSEVNQNEIPQPMSKNVDWHQVTVTTSSDF GAGNLFMSPIDYWKFVYNDVLKNPKMVNEYYHQAQHQTVAYFGGVYFNGDIIRANGSIPG YNCCFVANYKTKRMIMLFSNNINYLRLKVAANHILHAYMGDSWF >gi|227863371|gb|ACKR01000006.1| GENE 27 29589 - 30938 1574 449 aa, chain + ## HITS:1 COG:SPy1346 KEGG:ns NR:ns ## COG: SPy1346 COG2265 # Protein_GI_number: 15675282 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 448 13 462 462 424 48.0 1e-118 MKKNQIIDLEITDLSYEAMGVAHYEGMTVFVTNALPGEVVSAKILKVKKNFAFAKIEEIK KESPDRVKIKLNQWVQTGLASLAHIKYDKQLEFKRNQVVNLLKKAHLDEIEVGQTLPSPE QTGYRNKAQVPVREYNGQLEIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDVLRKYKI APYDEVNNTGIIRYLDVRRSKANGEIMVILVSRVKDFPQMMGVAAEISQIPKVSGLVLNY NPKKTNVILGKKDYLVFGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLG SDDVVIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEE IMPRWAKKGMKTDVVFVDPPRKGLTPEFINATVKTGPKKVVYISCNPATMIRDLLLFQEQ GYEFKRIDPVDMFPQTPHVEAVTVLTKKK >gi|227863371|gb|ACKR01000006.1| GENE 28 30941 - 31441 457 166 aa, chain + ## HITS:1 COG:SMc03241 KEGG:ns NR:ns ## COG: SMc03241 COG0454 # Protein_GI_number: 15966842 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Sinorhizobium meliloti # 11 143 15 149 168 64 26.0 7e-11 MIIKPLISEDEAKQTSKLFQTTWQETYKGVLPDVFLDNIPATAWVKRLNESGRHNLVFKD DNNEVQAAVSYGRPRDTRMLGCGELMALYVKPDFQGYNVGKTLLNAAENELKKMGYGKIY LWCLAEDKDAQEFFKHFGWRNIATQRFIEIAGKEYKYLLFQKNLHS >gi|227863371|gb|ACKR01000006.1| GENE 29 31929 - 33395 1663 488 aa, chain + ## HITS:1 COG:L35134 KEGG:ns NR:ns ## COG: L35134 COG0477 # Protein_GI_number: 15672220 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 476 1 477 486 257 33.0 4e-68 MNKKQITMVTAALMLGNVMSGLDGTIINTAIPAIVAALHGIQFMGWIVAIFLLGMSISIP IWTKIGEKITNKRAFELSLLLFVLGSALQGIAPNIIFFLCSRFIMGIGAGGMGSLPYIIA GYVFKNIKTRTKVLGYLTASWNGAAILGPLVGGWLIDAFSWHWVFYINIPIGLIAFLICL IYYKPVTPKKTPVFDIPGATLLVIGLLLFLMGVQLVGLTANWIIIGLIIISLVFIVFFFI REGHADNPIIPISLFKNKDLDGDFLLFAFTWGAFLAVNTYMPMWAQALLGLSALIGGMTL IPNSIVEIIASQSVAAIQEHMTTFKLVLIGIVAMIISSAGLFISGIHTPVQMLTFIGAFS GIGVGFIFVALQLKVQLDAGLKNMATATSTSYLIRILAQTVMAAVYGVIMNLNLASGVQT HKGITMTMMNKLSDARSAKSLPQNLVPTMRTIFHGGIKEIMLVSLILLIIAFVMNFYFNF GKKCKKLQ >gi|227863371|gb|ACKR01000006.1| GENE 30 33438 - 33950 540 170 aa, chain - ## HITS:1 COG:L108801 KEGG:ns NR:ns ## COG: L108801 COG1309 # Protein_GI_number: 15674221 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 2 160 6 180 204 70 29.0 1e-12 MNMKSLHTQQQIEHALFKLLQKKPYTEISIAEITRKAKVSRTSFYRNYDQKDEVIAQFLF NQYHNFIADIDQHNLRTFKQQLTAYLEFFKDNPQLMKLLLDAGFERELLNFQTKYLKKLM SVYHSDVHLPDYAIAYQSGGIYMLLVWWVKQNYQTSLTDLITYAEKHIML >gi|227863371|gb|ACKR01000006.1| GENE 31 34056 - 34991 974 311 aa, chain + ## HITS:1 COG:SA0102 KEGG:ns NR:ns ## COG: SA0102 COG4716 # Protein_GI_number: 15925810 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Staphylococcus aureus N315 # 1 308 1 307 591 399 60.0 1e-111 MHYSNGNYEAFVKADKPKDVDQKSAYIVGSGLAALATAVFLIRDGQMKGEKIHIFEELGL PGGSMDGIYNKEKESYIIRGGREMEPHFECLWDLFRSIPSPDHEGESILDSFYRLNRKDP SYAKTRVIVNRGQALPTDGQLLLTPKAVKEIVDLCLTPEKDLQNKKINEVFTKEFFESNF WLYWSTMFAFEPWASAMEMRRYLMRFVQHVATLKNLSSLRFTKYNQYESLILPLVKYLKD RGVIFHYNTVVDNIFVNRSDGEKVAKQIILTEDGEKKTIDLTPNDLVFVTNGSITDSTTY GDQLHPAPAEH >gi|227863371|gb|ACKR01000006.1| GENE 32 35094 - 35828 929 244 aa, chain + ## HITS:1 COG:SPy0470 KEGG:ns NR:ns ## COG: SPy0470 COG4716 # Protein_GI_number: 15674587 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Streptococcus pyogenes M1 GAS # 1 244 345 590 590 306 58.0 2e-83 MSATITFKNDDVVPFIEAVNKKDPHSGSIVTSGPTTIKDSNWLLGYSISRQPHFKAQKPN ELIVWLYGLFSDTKGNYVEKTMPDCNGLEMCEEWLYHMGVPEERIPEIAAAATTIPVHMP YITSYFMPRALGDRPKVVPDHSKNLAFIGNFAETPRDTVFTTEYSVRTAMEAVYTLLNID RGVPEVFASAFDVRMLMNAMYYLNDQKKLADLDLPMPEKFAIKGMLKKVKGTYIEELMKK YKLM Prediction of potential genes in microbial genomes Time: Wed May 25 06:06:39 2011 Seq name: gi|227863368|gb|ACKR01000007.1| Lactobacillus crispatus JV-V01 contig00007, whole genome shotgun sequence Length of sequence - 376 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 231 126 ## gi|227877034|ref|ZP_03995125.1| hypothetical protein HMPREF0506_0126 - Prom 264 - 323 5.8 Predicted protein(s) >gi|227863368|gb|ACKR01000007.1| GENE 1 3 - 231 126 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227877034|ref|ZP_03995125.1| ## NR: gi|227877034|ref|ZP_03995125.1| hypothetical protein HMPREF0506_0126 [Lactobacillus crispatus JV-V01] # 1 76 1 76 77 119 100.0 5e-26 MWLLLTQAVVSPLFDLWIFYQVARQKYKYADIFLIILFVALSLGDASGYINEFVSDLLEI LSIFFYFKISRKSKAN Prediction of potential genes in microbial genomes Time: Wed May 25 06:06:44 2011 Seq name: gi|227863366|gb|ACKR01000008.1| Lactobacillus crispatus JV-V01 contig00008, whole genome shotgun sequence Length of sequence - 357 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 32 - 355 272 ## COG0846 NAD-dependent protein deacetylases, SIR2 family Predicted protein(s) >gi|227863366|gb|ACKR01000008.1| GENE 1 32 - 355 272 107 aa, chain - ## HITS:1 COG:lin2882 KEGG:ns NR:ns ## COG: lin2882 COG0846 # Protein_GI_number: 16801942 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Listeria innocua # 2 106 124 229 229 92 41.0 2e-19 TKCHQPVSYEEYAKSYLHKDCGGIIRPGIVLYGEGIDPKVLNQSVEIMQKSDLIIICGTS FVVYPFAQLLAYRKEDAKIYSINKTEIPTPGVTQIIGDALTAFQNLN Prediction of potential genes in microbial genomes Time: Wed May 25 06:06:48 2011 Seq name: gi|227863356|gb|ACKR01000009.1| Lactobacillus crispatus JV-V01 contig00009, whole genome shotgun sequence Length of sequence - 10326 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 3, operones - 1 average op.length - 7.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 436 409 ## LBA1539 hypothetical protein - Prom 606 - 665 6.8 2 2 Op 1 2/0.000 - CDS 672 - 2606 2469 ## COG0441 Threonyl-tRNA synthetase - Prom 2626 - 2685 4.2 - Term 2617 - 2654 6.3 3 2 Op 2 8/0.000 - CDS 2892 - 3800 939 ## COG1484 DNA replication protein 4 2 Op 3 6/0.000 - CDS 3820 - 5154 1244 ## COG3611 Replication initiation/membrane attachment protein 5 2 Op 4 1/0.000 - CDS 5157 - 5624 414 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 6 2 Op 5 4/0.000 - CDS 5627 - 6229 385 ## COG0237 Dephospho-CoA kinase 7 2 Op 6 4/0.000 - CDS 6229 - 7056 578 ## COG0266 Formamidopyrimidine-DNA glycosylase 8 2 Op 7 . - CDS 7065 - 9728 2607 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains - Prom 9766 - 9825 7.4 9 3 Tu 1 . - CDS 10026 - 10277 142 ## LGAS_0324 hypothetical protein Predicted protein(s) >gi|227863356|gb|ACKR01000009.1| GENE 1 1 - 436 409 145 aa, chain - ## HITS:1 COG:no KEGG:LBA1539 NR:ns ## KEGG: LBA1539 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 23 145 31 149 171 113 54.0 2e-24 MTTALFMLAIIVMGQNRVDAASWGAKNLFTTPKETRGTWYYKQEGKIKKLKITTHTFNKI KLYKMLSSNQAIKWTKKLAKTDKKSGYKLAQKVGTSQYEATDFKFYKTAGFAANGWLSSD RADSGHTYVAIKKKDKSNNDKVDAL >gi|227863356|gb|ACKR01000009.1| GENE 2 672 - 2606 2469 644 aa, chain - ## HITS:1 COG:L0357 KEGG:ns NR:ns ## COG: L0357 COG0441 # Protein_GI_number: 15673893 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Lactococcus lactis # 5 642 4 644 646 781 58.0 0 MSFSITLPDGSKKDFDKAVSVKEVASSIATSLGKAAVGAKVNGVVKPLDYEIDNDVEVAI LTDKDEEGLDILRATAAFALEAVAKNKYPELRLGQHVADEGGFYVDTDKDDQIKVTELPE LEKAMEKLVKSGQAIEHVVMDKSELEDIFKDDPYKTDLLKKIDADKVDAYKLGDFVDFGF DALLPNTGKIKHFKLLSVAGAYWLGKSSNPMLQRIFGTAFFKEAALKEDLKRRAEIKERD HRTIGRDLDFFFVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGYQHVYTPVLMNLD AYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRSYRDLPLRVAELGM MHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQTEFAKILKLIMDVYKDFDITDYYFRL SYRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKTALGN DETMSTIQLDFMLPERFGLTYVGQDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTW LAPVQVKIIPVNLDAHGEYAEKVRQELAKRGFRAEVDTRNEKMGYKIRESQTQKVPYTLV LGDEEMKNGSVNVRRYGTDEEISKSLTDFINEIDADVKSYSREN >gi|227863356|gb|ACKR01000009.1| GENE 3 2892 - 3800 939 302 aa, chain - ## HITS:1 COG:lin1595 KEGG:ns NR:ns ## COG: lin1595 COG1484 # Protein_GI_number: 16800663 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Listeria innocua # 1 298 1 306 307 205 38.0 7e-53 MEAIGDLLKKIVKERNLGNEKELLKTALHDPDVQAFLQANREKIDKAMIRNSMANIYEYY AQKHSQNQVLAGYAPQLFLNGKVIDVRYKPTEAKIVADQQRAAKRRLHLIDLPAKLHDVN LSDIEVTNDRQQALTLIYDFLKKYKADPHQQGLYLSGDFGIGKTYMLAGLANYVATNFDR NVVFLHVPTFIAGLSSHFGDNSLQDEIRNLAECDVLILDDIGAETLSQWSRDDVLGVILQ ARMDNVLPTFFSSNLDMEALESHFEETRNATDPVKAKRLMQRVRFLAKEVVVSGPDRRNF SH >gi|227863356|gb|ACKR01000009.1| GENE 4 3820 - 5154 1244 444 aa, chain - ## HITS:1 COG:lin1596 KEGG:ns NR:ns ## COG: lin1596 COG3611 # Protein_GI_number: 16800664 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Listeria innocua # 11 423 14 427 458 77 24.0 6e-14 MFATSDPKHLYYVANKITLFPENEKILIKLYQPLVGAVAIALYQTLINDYDPYGIVSDAK GIYSLQEQLDCSLKDMFHSLHKLEAVGLVQTFLADNVFNNIIVFKLLQVPSADKFFATPL LASLLKEKVGSPTFHDLSHAFAKEAKLREKPIKNARDVSANFFDVFRLPGDEAINPSNEV VEAAQENKAPEVETAEINAQDPIDWDLIKDQYNVYQIPAQEVEIKKNQIRGLIQTYNLSE QEFVDETVPCLHGTHKLNMHEISNTIAENYKRLHTRENIQKQIEEGKKRAIATIKGLDAN DRKLLLEANENSPSEFLYKLKTEKGGIVAPGENYIINQLHTQYGLPEDLINILIHTCLTY DTVVTSNRAYRIANDWLQGGISTGVQALEYVKKRKADILKKKNRQSYRQNKRVEKGTDWS KKKAKNEGMSIEQLKDIFKDLKNK >gi|227863356|gb|ACKR01000009.1| GENE 5 5157 - 5624 414 155 aa, chain - ## HITS:1 COG:BH3146 KEGG:ns NR:ns ## COG: BH3146 COG1327 # Protein_GI_number: 15615708 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Bacillus halodurans # 1 153 1 153 153 171 54.0 7e-43 MECPNCHQNASRVIDSRPSDENRAIRRRRECENCCFRFTTFERVETAPLLVVKNDGTREP FSRKKILHGVMAAGQKRPISSEQFEQLVDRVENKIRKQGVSEISSKKIGQYVMDDLANLD DVAYIRFASIYREFKDMSSFMKTMEDMMAKKGKGN >gi|227863356|gb|ACKR01000009.1| GENE 6 5627 - 6229 385 200 aa, chain - ## HITS:1 COG:BS_ytaG KEGG:ns NR:ns ## COG: BS_ytaG COG0237 # Protein_GI_number: 16079958 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Bacillus subtilis # 1 193 1 193 197 127 38.0 2e-29 MSYVLALTGGIATGKSTADQFFKANKIPVIDDDQIAHDLMEPGQASWQAIKDYFGSEYLN DDQTINRKKLGQLVFKDSRALTKLNELTHPLIFLQTKKLLNQYQAQPIVILDVPLYFESG MDKKDIADGVLVITLPEKMQLQRLKERNHLTDEEARIRMQSQLPMVKKEQLADFVIENTG TIKELENKLAQLLVKIREEG >gi|227863356|gb|ACKR01000009.1| GENE 7 6229 - 7056 578 275 aa, chain - ## HITS:1 COG:BS_mutM KEGG:ns NR:ns ## COG: BS_mutM COG0266 # Protein_GI_number: 16079960 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Bacillus subtilis # 1 272 3 275 278 249 47.0 4e-66 MPEMPEVETVRRTLTPLIVGKTIKKVVLWYPKIVATDHKKFIKELPGKRVLKIDRYAKYL LIRLSDNLTIVSHLRMEGKYHLTTPDAPKDKHDHVEFIFTDQTALRYNDVRKFGRMQLIL TGTERQVTGIGKLGPEPNSIEFSSDYFIKALSRKKKNIKNVLLDQTTVAGLGNIYVDETL WQSGIHPLSAANKIPSEKAKELWQNINQTIKIATKKRGTTVHTYLDANGNVGGYQEMLKV YGHAGEPCAKCGTELEKIKVSGRGTTFCPHCQVVY >gi|227863356|gb|ACKR01000009.1| GENE 8 7065 - 9728 2607 887 aa, chain - ## HITS:1 COG:BS_polA_2 KEGG:ns NR:ns ## COG: BS_polA_2 COG0749 # Protein_GI_number: 16079961 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Bacillus subtilis # 328 887 2 560 560 579 54.0 1e-165 MADKKLLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLLKDVDPTHIL VAFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIG TFVDKGEKNGFTTTVVTGDRDLTQLASPSTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTE FIDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIREKD KAFLAKKLATIDRDSPVTLDIDDIKRQPVDYEKLRQFYEKMNFRKFLADLNASGAGQDST EVEKVEYIVLNDDNVKDVKATEDDTIEFYLEMLGANYHLAPFVGFSLKITDKIYVSRDVE LLEEDNIKHILEDEKIKKNVFDLKRTMVAAHRLDIHTHGLDYDMLLASYLINNENNSNDL GEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKINAIESLKKPLLEKLKDHE QDDLFETIEIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQAGEKFNLN SPKQLGHILFEKLGLPPIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVK GLLDVIQSDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAVN FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHR RRYLPDIHAKKFTVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKIVVQVH DELIFDVPKDELETIKKIVPEVMQSAVKLDVPLIADSGWGHNWYDAK >gi|227863356|gb|ACKR01000009.1| GENE 9 10026 - 10277 142 83 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0324 NR:ns ## KEGG: LGAS_0324 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 70 62 131 146 68 47.0 5e-11 MILKWYDTDYKTGHLRSGNMVTIFMLIATVAKIEVILNSNPHWCLPPFNEFLFSSEIKRS VFKPDDELKQFIRDFNKKHQKQN Prediction of potential genes in microbial genomes Time: Wed May 25 06:06:52 2011 Seq name: gi|227863354|gb|ACKR01000010.1| Lactobacillus crispatus JV-V01 contig00010, whole genome shotgun sequence Length of sequence - 916 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 11 - 914 658 ## COG4292 Predicted membrane protein Predicted protein(s) >gi|227863354|gb|ACKR01000010.1| GENE 1 11 - 914 658 301 aa, chain + ## HITS:1 COG:SA0341 KEGG:ns NR:ns ## COG: SA0341 COG4292 # Protein_GI_number: 15926054 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 2 297 8 310 377 107 30.0 4e-23 MKKIIAKPVGMFELFYDLVFVYAISRITAMIHHPVNGSIPLVTFLQFLLVVIVVMQIWLY QVIYFNRYSKNQFLDIGGLGLNMFVAVYLANNINTEWQVTFHYFNIAMAVMILILFCQYL FVKADNNDKQAFLIILGIEFILIIVGLIIGYPVGIYFCISGYIVGFILPLFLKGMFKTER VNFPHLVERVSLIVIIAFGEAIVNLTSYFNSKTPLVYAAFLFLSLVLMFASYVVLSDKLI DHHQISKGFVLMYSHIAIVVAIFLSTVAILYLQVHDINKTFLFFLIIFSMALYYFSLAIN Q Prediction of potential genes in microbial genomes Time: Wed May 25 06:06:53 2011 Seq name: gi|227863351|gb|ACKR01000011.1| Lactobacillus crispatus JV-V01 contig00011, whole genome shotgun sequence Length of sequence - 945 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 199 89 ## LCRIS_00939 membrane protein 2 1 Op 2 . + CDS 186 - 812 768 ## COG1051 ADP-ribose pyrophosphatase + Term 826 - 857 -0.5 Predicted protein(s) >gi|227863351|gb|ACKR01000011.1| GENE 1 2 - 199 89 65 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00939 NR:ns ## KEGG: LCRIS_00939 # Name: not_defined # Def: membrane protein # Organism: L.crispatus # Pathway: not_defined # 7 65 95 153 153 85 96.0 5e-16 NQVYNKSECRFSIRNLLTLLLIFALGVSYLWVVIKSKIGISIYLLIWNLLFFLEFYIKGN KNEFR >gi|227863351|gb|ACKR01000011.1| GENE 2 186 - 812 768 208 aa, chain + ## HITS:1 COG:BH3089 KEGG:ns NR:ns ## COG: BH3089 COG1051 # Protein_GI_number: 15615651 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Bacillus halodurans # 1 201 1 201 207 151 40.0 1e-36 MNSDDQFIKWATDLQSLAQAGLHYGHDVFDRERYEKIRKIAGEMMAARTGLPKEQIKTLF LGDEGYQTPKIDTRAAIFKDNKILLVREKMTQEWSLPGGWNDYDQTTAQNCVKEAYEEAG RVVRPVKIIAVQDRNHHNKPILATNITKVFYLCKEISGEFKPNDETDACDYFALDNLPKL SLGRNTEEQITMCFAANNDPNWQTQFES Prediction of potential genes in microbial genomes Time: Wed May 25 06:06:56 2011 Seq name: gi|227863348|gb|ACKR01000012.1| Lactobacillus crispatus JV-V01 contig00012, whole genome shotgun sequence Length of sequence - 3617 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 387 - 1763 1346 ## COG1114 Branched-chain amino acid permeases + Term 1779 - 1815 5.0 + Prom 1795 - 1854 7.0 2 2 Tu 1 . + CDS 1880 - 3617 1463 ## LCRIS_00942 putative protein without homology Predicted protein(s) >gi|227863348|gb|ACKR01000012.1| GENE 1 387 - 1763 1346 458 aa, chain + ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 7 450 3 447 449 318 41.0 2e-86 MTDHTSKKLTWKNYLVVASLLFGLFFGAGNLIFPLHLGQLAGANWGTAAVGFLITGVLLP LFSVLAVAITHADGVYDIGKPLGAGFAVVFMVLIHATIGPLFGTPRTATVSFTVGIAPFM PKNMQSSALLVFSALFFLAAFAFSYHQNNILSNVGKVLNPLFLALLFLVFLVAFARPLGN PQTAAVTAAYKHGALVNGFLEGYNTMDALAGLAFGVTVVTAVRGMGQKDAKSVSKVVAKS GVLAVLEIGFIYLLLILMGAMSLGRFAVSDNGGVAFNQIVNVYGGVFGQALLAFLLTVTC LTTAVGLVAAFAQDFHKHFPKVSYHVWLALSCLASFLAANFGLDQIISWSTPMLMFLYPL SMVLILLSVCSPLFNKAGVVYFFVILFTVVPALGDMVVAFPSVVSQSSFGLAVASLRNHL PLASMGLSWLVPALVGLAIGLVVYHVRNKKTVPVLEED >gi|227863348|gb|ACKR01000012.1| GENE 2 1880 - 3617 1463 579 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00942 NR:ns ## KEGG: LCRIS_00942 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 579 1 579 579 1047 97.0 0 MLPVRYGINLAPEIKENKIDIIKNEPFTVWDADVINIQKQKYYLLVEKDTSFPILLTKLD TKLFNDVFANAIKSYDFILFKQQQKLVSAVKSKQMSFYDTKSQASLMLEKIRKLIEDNQS EYLNLIDVVKDEKNIVDKLTVMSATIFALDSQIGQNFISKMIDEVSTYFPIKPQKPNRRY KYVDLVPKFEDFSNFEKYENKPVKGNEKIVAKIKENNQKLIDQYAKYVPAGIGYIQPDQM LPDYLNHYLLRNKIHLVTNDLGEAISYLWIMISNNKLHPLEIEQITNTLKNFYVFLSRVG LIRKTDSKEIGMNIDWVVEEINSYSDQGLDEDLINDMIAAIEANPKKILELEDLDLSSQD LSRILEGLRKDLESHDKKQKTRKKTIFENQTRNRATYEIRVKLKSFKPSTWRRFIISGNT SVKTLEVAMLDMFNADFGHMFDLLNKKTQERFENAESIAEAKDWDPATGIDYEKAKVSYF EKRDKLLLTYDYGDSWEFEVDIKNITTDQAAPKCPKILSGKGYGIIDDIGGVWSLQDYYD TPKDKVDPEMIDWLMGGKAINLDNFNKEELNQRMEQYKN Prediction of potential genes in microbial genomes Time: Wed May 25 06:07:04 2011 Seq name: gi|227863344|gb|ACKR01000013.1| Lactobacillus crispatus JV-V01 contig00013, whole genome shotgun sequence Length of sequence - 1544 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 48 - 542 557 ## COG2077 Peroxiredoxin - Prom 626 - 685 6.4 + Prom 510 - 569 6.5 2 2 Tu 1 . + CDS 708 - 866 78 ## LCRIS_00944 putative protein without homology + Term 1006 - 1043 0.4 3 3 Tu 1 . - CDS 933 - 1466 297 ## COG0583 Transcriptional regulator Predicted protein(s) >gi|227863344|gb|ACKR01000013.1| GENE 1 48 - 542 557 164 aa, chain - ## HITS:1 COG:BS_ytgI KEGG:ns NR:ns ## COG: BS_ytgI COG2077 # Protein_GI_number: 16080001 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Bacillus subtilis # 2 164 3 166 167 139 43.0 3e-33 MKVTFKGKEVELIGTPPKVGDEMPNFTVLDKNKQEVTKDNLLGKNTLISVVPDINTSVCS IQTKTFNKTMDQFPDVNFLTISTNTIKDQQNWCAAEGVKNMQLMSDEKLSFGKATGLLIP ESGILARSVWILEPNGKIVYREIVDEITHEPDYNTAVNELKKLL >gi|227863344|gb|ACKR01000013.1| GENE 2 708 - 866 78 52 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00944 NR:ns ## KEGG: LCRIS_00944 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 52 1 52 52 61 100.0 9e-09 MLIGTFSLFSIMMLLNNWSINIWTLFIFILSYVVIWITIKLTQNRQIKKRNS >gi|227863344|gb|ACKR01000013.1| GENE 3 933 - 1466 297 177 aa, chain - ## HITS:1 COG:STM2424 KEGG:ns NR:ns ## COG: STM2424 COG0583 # Protein_GI_number: 16765744 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 4 170 1 189 308 68 29.0 5e-12 MNKLNFELLHIFDVVSRFASFSQASNYLYLDQSTVSKKIRQLEAIVNKKLFIRNTNGIVL TAAGLAFKNKSDKILQDLKEIIALKPTITTLRVGVFDNISAYLMPDIFAENFNLFNEGKL DAIVINSDFFTQIQGSAIETQITNESFAILFRKNNALIASQNSISLNDLKNKNRKSK Prediction of potential genes in microbial genomes Time: Wed May 25 06:07:06 2011 Seq name: gi|227863341|gb|ACKR01000014.1| Lactobacillus crispatus JV-V01 contig00014, whole genome shotgun sequence Length of sequence - 1959 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 62 - 121 6.5 1 1 Op 1 18/0.000 + CDS 146 - 574 446 ## COG1846 Transcriptional regulators 2 1 Op 2 . + CDS 561 - 1949 1280 ## COG0477 Permeases of the major facilitator superfamily Predicted protein(s) >gi|227863341|gb|ACKR01000014.1| GENE 1 146 - 574 446 142 aa, chain + ## HITS:1 COG:L182006 KEGG:ns NR:ns ## COG: L182006 COG1846 # Protein_GI_number: 15673522 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 2 130 6 138 148 81 39.0 5e-16 MEPIKKVIKQSSVQIDRERETFANTLGITGVQMTTLDFISNHQNQTVSQHEIEKELDLKR STVTIMIQRMEKRDLVKRVTNAVDKRQKDVSLTAKSKSFIPKIKDYMRQDDRKVRSHFTQ AEINTALKVLKFVKNGGKNGTK >gi|227863341|gb|ACKR01000014.1| GENE 2 561 - 1949 1280 462 aa, chain + ## HITS:1 COG:L184818 KEGG:ns NR:ns ## COG: L184818 COG0477 # Protein_GI_number: 15673330 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 12 454 9 444 454 258 37.0 3e-68 MEPNNERISSKVFAAVIATGLMSFSGVLVETSMNIAFPTLMRDFNVSTNVVQWMTSIYLL AVSIIVPISAALKSSYKTKSLFLTANFLFLLGLIVDATAPIFPVLLLGRVIQGIGTGIAL PLMFNIILEQVPKGKVGTMMGVGSMITGITPALGPTFGGIVLQALNWRWVFWFLIPLIII SLLLGIWGIEQKSAVKKVKIDRLSFIIIAIFFIGMLVGFSNLGTGQLGATAIPILIALLA LALLIWRSNRIKMPILDLKLFKNHSFTGHIIGFFCIQLISLGNAFLLPNFIQLVNHNTAF LAGLIVLPAGVAGAIMGPIGGRLLDNYGARKPVLFGVSLMLLETLFFAVLPNQMNNIFIL IVYIIYMAGMGMILGDVMTDTLAVIDESETTQGNAILNTAQQFAGAVGTSITSAIVASSQ KGTKSADLTRIGTQHAYIFLLCLVILIMALFIKYVGRRTATK Prediction of potential genes in microbial genomes Time: Wed May 25 06:07:16 2011 Seq name: gi|227863311|gb|ACKR01000015.1| Lactobacillus crispatus JV-V01 contig00015, whole genome shotgun sequence Length of sequence - 29872 bp Number of predicted genes - 28, with homology - 27 Number of transcription units - 14, operones - 8 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 4 - 63 2.8 1 1 Op 1 1/0.000 + CDS 91 - 1173 1023 ## PROTEIN SUPPORTED gi|15900201|ref|NP_344805.1| hypothetical protein SP_0267 + Term 1192 - 1234 9.5 + Prom 1179 - 1238 1.6 2 1 Op 2 . + CDS 1263 - 1754 507 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 3 1 Op 3 . + CDS 1756 - 2412 620 ## LCRIS_00949 glucose-6-phosphate 1-dehydrogenase + Prom 2415 - 2474 2.1 4 1 Op 4 . + CDS 2498 - 2626 87 ## + Prom 2759 - 2818 8.0 5 2 Tu 1 . + CDS 2852 - 3091 408 ## LCRIS_00950 hypothetical protein + Term 3109 - 3154 7.3 + Prom 3206 - 3265 6.5 6 3 Op 1 35/0.000 + CDS 3313 - 4908 1254 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 7 3 Op 2 . + CDS 4905 - 6287 1171 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Prom 6507 - 6566 4.6 8 4 Tu 1 . + CDS 6647 - 7999 1448 ## COG1113 Gamma-aminobutyrate permease and related permeases + Prom 8006 - 8065 5.8 9 5 Op 1 16/0.000 + CDS 8115 - 9071 1148 ## COG0207 Thymidylate synthase 10 5 Op 2 . + CDS 9081 - 9590 379 ## COG0262 Dihydrofolate reductase + Term 9594 - 9639 2.2 + Prom 9592 - 9651 8.0 11 6 Tu 1 . + CDS 9676 - 12078 2070 ## COG0474 Cation transport ATPase + Term 12084 - 12136 5.1 - Term 12073 - 12119 5.1 12 7 Tu 1 . - CDS 12120 - 13061 968 ## LCRIS_00957 DNA-entry nuclease - Prom 13095 - 13154 9.4 + Prom 13399 - 13458 3.1 13 8 Op 1 10/0.000 + CDS 13480 - 14334 919 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 14 8 Op 2 32/0.000 + CDS 14347 - 15411 1276 ## COG1135 ABC-type metal ion transport system, ATPase component 15 8 Op 3 . + CDS 15404 - 16105 947 ## COG2011 ABC-type metal ion transport system, permease component + Term 16112 - 16146 4.0 + Prom 16126 - 16185 6.1 16 9 Op 1 . + CDS 16236 - 17639 1988 ## COG0114 Fumarase 17 9 Op 2 . + CDS 17652 - 19028 1658 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 19049 - 19084 3.5 + Prom 19118 - 19177 7.1 18 10 Tu 1 . + CDS 19225 - 20154 1177 ## COG0039 Malate/lactate dehydrogenases + Term 20179 - 20210 -0.6 + Prom 20186 - 20245 6.1 19 11 Tu 1 . + CDS 20290 - 21606 1453 ## COG3579 Aminopeptidase C + Term 21633 - 21671 1.5 + Prom 21709 - 21768 9.7 20 12 Op 1 2/0.000 + CDS 21859 - 22557 766 ## COG0684 Demethylmenaquinone methyltransferase 21 12 Op 2 . + CDS 22574 - 24043 1541 ## COG0471 Di- and tricarboxylate transporters + Term 24051 - 24087 4.0 + Prom 24045 - 24104 1.8 22 13 Op 1 . + CDS 24125 - 24916 690 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 23 13 Op 2 5/0.000 + CDS 24997 - 26052 897 ## COG3053 Citrate lyase synthetase 24 13 Op 3 6/0.000 + CDS 26042 - 26335 495 ## COG3052 Citrate lyase, gamma subunit 25 13 Op 4 6/0.000 + CDS 26336 - 27250 1148 ## COG2301 Citrate lyase beta subunit 26 13 Op 5 . + CDS 27288 - 28781 1660 ## COG3051 Citrate lyase, alpha subunit + Term 28810 - 28855 5.1 27 14 Op 1 . + CDS 29197 - 29652 674 ## COG2707 Predicted membrane protein 28 14 Op 2 . + CDS 29682 - 29843 111 ## LCRIS_00973 putative protein without homology Predicted protein(s) >gi|227863311|gb|ACKR01000015.1| GENE 1 91 - 1173 1023 360 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900201|ref|NP_344805.1| hypothetical protein SP_0267 [Streptococcus pneumoniae TIGR4] # 3 348 2 347 349 398 55 1e-110 MNIELGISSFGETTPLETTGKAISHDQRIRDLLEEIILADKLNIDAFAIGEHHRKDFAVS APEIILAAAASKTKQIHLSSATTNLPTINPIRVYEQYATMDAIAPGRVEIMAGRGSFTEA FDLFGYDLENYDELFIEKLEMLLKMNKEEILDLPKGKFTPRVDHKGIYPRTKKPIPISVA TGGSIESTIRTAELGLPIVYAIIGGDPLHFKPLIKLYRRVAEKVGNDLTKMPIAAHSWGW LNHDKDKAIKDYFYPTKLLVDQISTERPQWTGMTYEQYLESVGENGAIFVGDSETVANKI IKVMEELGLTRFYLHLPIASMPHEDVMNAIRIYGEEVVPKVKTYFQKKTEQDRLKLKWKN >gi|227863311|gb|ACKR01000015.1| GENE 2 1263 - 1754 507 163 aa, chain + ## HITS:1 COG:SA2454 KEGG:ns NR:ns ## COG: SA2454 COG0454 # Protein_GI_number: 15928247 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 1 142 1 142 166 108 38.0 4e-24 MIIRTVTMDDLNEVVELESDAFKMTKKQTEQDMIGRIENYPDTFLVAQEDGKVIGHIFGP AFNKRYIEDELYFENHPNQKDDRYQMVLSLAVLPEYRKQGVATKLIEAIAQEGRKQNRQA ISLTCLPKLIKFYEKRGFYNEGETNDDIPDPTGVTSVNMVRAL >gi|227863311|gb|ACKR01000015.1| GENE 3 1756 - 2412 620 218 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00949 NR:ns ## KEGG: LCRIS_00949 # Name: not_defined # Def: glucose-6-phosphate 1-dehydrogenase # Organism: L.crispatus # Pathway: not_defined # 1 218 1 218 218 394 98.0 1e-108 MTQLTEEMYAIFDRDEFSFKKLKSQYSEDELAQIKTDFKEIWQTWKEINLNVYQKLPQDK FAKVHVESWTNGWNLRDHYWAAYRLNALADKSPCIGVMLDNKQLQVYLMFQHYKSEKRGD NPEQYNKLLTDLPDWAKGRTTNNWYLWDKNEMEFADHLSLNEYLTDAEKQTSFNKEATQS SFLLGKFAFRKQDQVADMENFILDGIGQLLPLYRKLAN >gi|227863311|gb|ACKR01000015.1| GENE 4 2498 - 2626 87 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNIYSIIGMIILGLVTGTVTSMIVALIFVFLGIAMLVVHLIK >gi|227863311|gb|ACKR01000015.1| GENE 5 2852 - 3091 408 79 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00950 NR:ns ## KEGG: LCRIS_00950 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 79 1 79 79 132 97.0 4e-30 MNTIAFNQQLSDKLNEELNPELFSTPGKGEITVVANEKKDLREYRIITKDNKVVDVVDAY DADHDAAYQKMMDFLKNYR >gi|227863311|gb|ACKR01000015.1| GENE 6 3313 - 4908 1254 531 aa, chain + ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 68 510 62 513 535 134 24.0 3e-31 MSIKGIFKVNKAKFILIFLMVIIGTTVDAASQYLMTPAFNQLKKMNLFGFIIFICLAIGC DLVRLALITSSDYLYGKQSQSYLHQIRVKISRYFFKNEIAQTAKVQNELVANLDQLTQNY LKPIKNGFMYLLSVLFSIGILFSFNWLLVVMTVILTAISLFLPKTFEKMTSSATIKVTKK NEKFLNTLAQWMSGLDELRRYASFNIFSESVNQSADEYKKAAIHQGATIAIADMITFVVN IVGQMLLMVLCAYLYLQGQIVFGGVITTIQFSSTVMNGVSAFVTEWNLIKSTKDLNKEIT NLQAPVKIAPDQHQVKKINWLEVKDLALQFKNGEYLSYPDFTVKQGEKILLTGDSGTGKS TLFKLILGKLTPSQGEINFFDHNGQKLNFDLDELGYIAQDNTLFPDTIANNVTMFNSALN NQISGVLDQVGFTKDLNKMSAGLNSQIDLDKGNLSGGQRQKLVLSRALIHQSPWLLIDEG TSAIDSAGTKQVLQNLLNTPSTVIMIAHNYSTELVSMFDRQIKLTNRGDAD >gi|227863311|gb|ACKR01000015.1| GENE 7 4905 - 6287 1171 460 aa, chain + ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 1 438 1 442 535 110 23.0 7e-24 MSFKGFIKTNYLRFIYINILSVISGVAAIGAGYIQMYWLTYIKDRAWVKILLATALMGIL YLAAQGMIYYIQFVIRVQEEEYNKKVRARLATHYFRDGQNHQVPAVQNRMTNDLEMIRKN YFDWYPIVPFYGSMFVAALVALLTINWSIFLTSVVIDIVSYFVPKLVQKKMEQATNNVSE QNKHYLDVLAKWFSGLEELRRYFAGAKLFQVGEKTSSKVEQAHVKQTAAQQQLIILNGIC NMVGQIILLSLTAFLITKNLVIFGAIMSVQNFAANISIGLQQTIQALSFMKSSQDLMKQV DGDATVIEKVKAGQEETPVAFSTKDLALQYPNGEKLTFPDIAVKPGEKILLTGDSGAGKS TLFKLILGELKPSTGKIEFQNSQGLTIKPNMSRIGYIPQEPNLFPGTIKENITMFNKQLN NQVAQVLDEVNFAADIKKFKAGVDEKIDLDIPEDNVKKSS >gi|227863311|gb|ACKR01000015.1| GENE 8 6647 - 7999 1448 450 aa, chain + ## HITS:1 COG:SA2109 KEGG:ns NR:ns ## COG: SA2109 COG1113 # Protein_GI_number: 15927896 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 1 450 10 455 459 449 56.0 1e-126 MTAGQMEMISLGGAIGVGLFMGSTSTIKWTGPSVLLAYMFVGLILYIVMRALGEMLYINP GTGSFADYATEYVHPLAGYLAMWANVFEYIVVGMSEVVAATEYLKYWWPNISALWSGIII IAFLLLANLASAKAYASLEFWFAMIKVVTIILMIILGFIVIFFGVGNGGHPTGFSNLWSH GGFFTGGIKGFFFSMSIIVGSYEGIELLGISAGEVANPQEAIVKSVKSVLFRILIFYVGA IFVIVTIYPWDKLDSLGSPFVTTFAKVGITAAASIINFVVLTAALSGANSGIYSSSRMLF KLSYDHEAPGIFKHISKRIVPDRAIMGISGGIFIGFVLNVIASQFNHSASDLFVIVFSSS VLPGMIPWFVILLAELRFRRHNKGAMQDHPFKLPLYPFSNYFAFAMLILIVIFMFINPDT RISVIAGALVLIVATIVYLVRHKSEFKKNN >gi|227863311|gb|ACKR01000015.1| GENE 9 8115 - 9071 1148 318 aa, chain + ## HITS:1 COG:lin1988 KEGG:ns NR:ns ## COG: lin1988 COG0207 # Protein_GI_number: 16801054 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Listeria innocua # 8 318 4 314 314 427 63.0 1e-119 MAILEQPYLDLLEKIMTEGHDKDDRTGTGTRSYFGAQMRFDLTQGFPLLTTKKVPFGLIK SELLWFLRGDTNIRFLLEHNNHIWDEWAFKNWIESAEYQGADMTDFGLRSQSDPEFNQVY QAEMKKFDQRILDDPAFAQKYGNLGDVYGAQWRHWEKRSGGFIDQIANVIKQIKETPDSR RMIVTAWNPEDIPTSALPPCHVMFQFYVVDGKISVQLYQRSGDMFLGVPFNIASYSLLLN MIARETGLKVGEFVHTLGDAHIYRNHFSQVKELLSRTPYDSPELWLNPEKKHIEDFEMKD IKVLNYQHHGTIKAPVAV >gi|227863311|gb|ACKR01000015.1| GENE 10 9081 - 9590 379 169 aa, chain + ## HITS:1 COG:lin1987 KEGG:ns NR:ns ## COG: lin1987 COG0262 # Protein_GI_number: 16801053 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Listeria innocua # 1 166 1 159 160 138 44.0 5e-33 MLSFVWAEDQQHGIGIDGHLPWHLPADLKHFKEKTIGHPIIMGRKTFASLPHLLPERKHI VLTHRQELKQKYAGNEQVKIVSTLAELNEYLRQHQTEEICAIGGVSIFRALLDQVDLLEK TEIKANFKTDTVMPAINYDDFELVSREEHHHDEKNKYDYTFLTYRRKNK >gi|227863311|gb|ACKR01000015.1| GENE 11 9676 - 12078 2070 800 aa, chain + ## HITS:1 COG:L168650 KEGG:ns NR:ns ## COG: L168650 COG0474 # Protein_GI_number: 15672557 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 6 766 3 770 775 724 51.0 0 MTDKQITGLTQAEVDQRIQNGQVNQAIDDQSKTATQIIRENVFTYFNLIFAILAVLLVFV GAWNDLTFLPVIVLNTIIGIVQELRAKKVLSKLNVMNATEIIAVRDGQEEKIPIEKLVQD DVILLQTGDQIPADARVISGELRVNEALLTGESDEITKTKDAELMSGSFVVSGKAYAVLE KVGKDSYISKLTIKAKAMGSVEQSEMVRSINRLVKWVGIIIIPVGIALFSQSFFLNNIGL KRSITSMEAALIGMIPEGLYLLTTIALALAAMRLARQEVMLHDMKSVETLARVNVLCVDK TGTITEPKMAVEKAVSSKNFTGDLSSIIADFAKNMPADNATMKAIQAYFKDGTKTADSIL PFTSVNKYSGVIFGNQTTLIGAPEMVLRDQFAQYQTEFEKYAAEGYRVLIAANYPGILTE DNSALKENVQVLGYILLSNPIRKEAKSTFQYFNQQGVDIKVISGDNPVTVARVAKQAGIN GADKYIDAQTIKDGEYEQAMQNYNVFGRVKPDQKRKFVVALQNQGNTVAMTGDGVNDILA MKKADCSIAMASGNSAAVQASQVVLLDSNFAKMPLVVNQGRQVVNNIQRSASLFLVKNIF SFLMAIFSLIMTINYPLQPAQITLISAFTIGLPSFLLALESNHKRIRGKFMPNVLARAIP GGLTDWLAVAILVIAGASISLDHGQVGTTATMLLVLVGFMVMYHISAPINKFRLAVMGLS VICIIGSTIFFPRLFSLTMLNNKSLFILAVLFCAAVTIFRWLSKILDGIAEVLVVFDQKG KNMTFAEFKEAYDRGKNNVK >gi|227863311|gb|ACKR01000015.1| GENE 12 12120 - 13061 968 313 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00957 NR:ns ## KEGG: LCRIS_00957 # Name: not_defined # Def: DNA-entry nuclease # Organism: L.crispatus # Pathway: not_defined # 1 313 1 313 313 575 99.0 1e-163 MKKNRFRSFALSLAAAIGFISFANTNVPCNNQTVYAVSDKALVNLKYHNKEIVTVDHDQP QFSKSTLSKKKGPWQKYSQLDYLNRAHAANALLNKRLMPHSQRAALTWNPTGWHNKRIAS GWLYNRCHLIGYQLTGQNNNPRNLITGTRELNDPDMLKYENEVAEYLRSSSKNYVRYRVT PIFKGNDLLANGVEMEAEATSKNGPRFNVYIFNEQPGMLLNYKTGTSKVKHGSSTIAEHV KSRKRSTSRVTKKRTIHHIKGTVSTAEHRVVGNRRSKIYHVMNGQNYHMSSANAVYFNSE AAAQAAGYRKSLR >gi|227863311|gb|ACKR01000015.1| GENE 13 13480 - 14334 919 284 aa, chain + ## HITS:1 COG:L118475 KEGG:ns NR:ns ## COG: L118475 COG1464 # Protein_GI_number: 15672301 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Lactococcus lactis # 38 284 38 286 286 271 59.0 1e-72 MRKRRRRNTIIWTIIGILIVIAGWFSFGPGIPSQNQAKTVTVGIVGESKAEAAIWKSIAK TAKEKYGITLKTKNFTDYNQPNKALKSGDIDMNAFQHYAFLKDWNKANHGGVVAIGRTYI APIRLYSRKYHKLSDLPDGATIAVPNDATNESRALFVLKNAGLIKLKKGKTLVTVADITS NPNNYKIKEIGAEQTSRVLNSVDASVVNNDYAGPAGLTDKQTIYIEPINKDSKQWINILC VKQGKQKDKLYQDVVKAYQTAETKKLTKEYYGNTQIAAWDVKLK >gi|227863311|gb|ACKR01000015.1| GENE 14 14347 - 15411 1276 354 aa, chain + ## HITS:1 COG:SP0151 KEGG:ns NR:ns ## COG: SP0151 COG1135 # Protein_GI_number: 15900089 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 3 345 5 349 353 302 51.0 8e-82 MSIVELKNVEVAFPQKKGEPVKAVNNVSLSIEKGDIYGIVGFSGAGKSTLVRTVNLLQKP TAGSITVDGTEFVKDGKQVISNKELQLKRRNIGMIFQGFNLLNETTVLENVAFALKHEKL SDEELEKRSLELLDLVDLKDKADFYPAELSGGQQQRVAIARALANNPDILISDEATSALD PQNTQQILDLLKRLNKKFHLTVILITHEMDAVKKIATKVAVMEHGNVIEDGSLRDVFLHP KQDLTKKFVGGSLEAISTLNSLALDKLGKNEAIYQLVYSVANVTKSIIIELYKQIGVEVS MLYGNVELLNEEPIGTLVVLVKGDPAKQKQTQEFLAKQNVTFTRLDEKGNVYHD >gi|227863311|gb|ACKR01000015.1| GENE 15 15404 - 16105 947 233 aa, chain + ## HITS:1 COG:L122401 KEGG:ns NR:ns ## COG: L122401 COG2011 # Protein_GI_number: 15672305 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Lactococcus lactis # 1 231 1 231 231 246 63.0 2e-65 MISFLSKYLPNVVQLGWGGDAGWGTSIFQTLFMTFWSAIFGGILGIIFGVILVLTKDGGI RPNKFWYNFSDKLVSIFRAIPFIILLAFVAPVTQKIVGTQIGMKAALVPLTLGVFPFYAR QVQVALESVDPGKVEAAESLGSTARDIIFDVYLRESRSELIRVSTVTIISLIGLTAMAGA VGAGGLGNTAISYGYNRFNNDVTLVATVLVIILIFIVQIIGDFFAKRMNHQSR >gi|227863311|gb|ACKR01000015.1| GENE 16 16236 - 17639 1988 467 aa, chain + ## HITS:1 COG:lin2328 KEGG:ns NR:ns ## COG: lin2328 COG0114 # Protein_GI_number: 16801392 # Func_class: C Energy production and conversion # Function: Fumarase # Organism: Listeria innocua # 7 460 3 455 455 447 52.0 1e-125 MSEEEYRVESDTIGPVKIPKNALWGPQTERSRNNFPSGELMPLQIIRAFLHLKKAAAESN VEVGDEPKEKGEAIEDAIDHLLALSDTDLRKDFPLHVLQTGSGTQSNMNVNEVVANLANK LHPGLDILPNDDVNRGQSSNDTYPTAMNIVAVEALDKLEPAIQHLIDELVVKEKKYWKTV KVGRTHLQDATPLTFGQELSGYISALKHDLSYIRELKPTLYELAIGGTAVGTGLNAAPGM TEKIAGKLSEVYGHKFEVKTNKFWGLAHHSGLDVVHGALKTLAADMFKIAQDIRLLASGP RAGYHELNIPANEPGSSIMPGKVNPTQAEAVTMAAAKVFGNDTTITFASSQGNFEMNVFK TVIIASFLDSCDILTGTITGFADKMIHGLTVNEERMDELLENSLMTVTALSPHIGYHAAA KIAQTADKEGTTLREAALKSGKVTEEQYDEWMDYMQMTNVDKSTPEE >gi|227863311|gb|ACKR01000015.1| GENE 17 17652 - 19028 1658 458 aa, chain + ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 6 455 57 504 506 424 53.0 1e-118 MPNTKELKNKYDAIVVGSGGAGLTAALQAHELGLNVVVLEKNEKTGGNTSRASSGMNASE SLVQLDEGIIDNNRDFYEETLKGGGLLNDRAMLKYFVNHSALAISWLMKYGIRLTDLTIT GGMSKKRAHRPASMEPVGFYLTSRMTTQVKKAGIDIFTGAKVTKLLQDAKKRVNGVEVET PDGIKTVKAKVVLLATGGFGASKDIIKKYRPDLVDYKTTNQPGATGDGLKLAEALDAQLM QMNFIQVHPTADTDNPHVYLIGEGLRGEGAILVNKNGQRFVNELSTRKIVSSAITNLHED GAYLIFDSGVRAHFAAVEFYDQIGLVEHGTDLADLAKKIGVNGANLEKTIAAWNKSVATG KDKEFGRTTGMDRELDRGPYFAIHVHPAIHYTMGGIHINTETQVLDTNGNVIDGLFAAGE VSGGLHGNNRIGGNSIAETVIFGRQAGIQMAKYVRESK >gi|227863311|gb|ACKR01000015.1| GENE 18 19225 - 20154 1177 309 aa, chain + ## HITS:1 COG:lin0242 KEGG:ns NR:ns ## COG: lin0242 COG0039 # Protein_GI_number: 16799319 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 3 304 5 305 313 273 47.0 3e-73 MSRKVFLVGDGAVGSTFANDLLQNTIVDELAIFDVAKDRPVGDSMDLEDITPFMGQTNIH PAADYSDAKDADVCVITAGVPRKPGETRLDLVNKNVKILESIVKPVVESGFNGVFVVSAN PVDILTTLTQKLSGFPKNRVIGTGTSLDSMRLRVELSKRLNVPVAKVNSMVLGEHGDTSF ENFDESTVAGKALRDYSEINDDVLAEIETDVRKKGGKIIANKGATFYGVAMMLTQIVSAI LDNRAICLPLSAPINGEYGIKHDLYLGTPTVINGEGIEKVIETKLSDTEHAKMINSADKM QEVLSGINL >gi|227863311|gb|ACKR01000015.1| GENE 19 20290 - 21606 1453 438 aa, chain + ## HITS:1 COG:TP0112 KEGG:ns NR:ns ## COG: TP0112 COG3579 # Protein_GI_number: 15639106 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Treponema pallidum # 4 437 3 439 450 325 39.0 9e-89 MTVISQQEIEGFSESFNSNPENKVASRAARRSGLLEASFNDRVSERLNHVFSTELDIGGV TDQKHSGRCWEFTTLNVLRHYFGKENKVKDFTFSQAYNFFWDKIERANAFYNAIIRLADK PLTDRHVQAWLEFAGEDGGLWTMAINLVKKYGVVPSYAMPESFNTNNTTALAENLARKER KDALVLRKLVNEGKRDEAEKTKKEFLNEIYRMVSVALGEPPKKFDLEYRDDDKKYHLERD LTPQAFVQKYFKDFNFDDYVALSNIPNHEYNKVYHLPLYDNVAGGDQVKYLNVPIEYLAQ AAVAQLKAGEAVSFGNDVLKQMERKTGFLDTELYKTDQLFDVDTQMSKADRLNTGEGFAT HDMTLVGVDEDNGHIRKWKVENSWGDKFGHKGFYEMSQAWFEQYVYDVIVKKEFLPKELQ ELLDQPAIDVMPWENFGE >gi|227863311|gb|ACKR01000015.1| GENE 20 21859 - 22557 766 232 aa, chain + ## HITS:1 COG:RSp0944 KEGG:ns NR:ns ## COG: RSp0944 COG0684 # Protein_GI_number: 17549165 # Func_class: H Coenzyme transport and metabolism # Function: Demethylmenaquinone methyltransferase # Organism: Ralstonia solanacearum # 26 215 28 216 224 140 39.0 3e-33 MPVGKRIYLKRQMPDPKVVAGFKKIPASNTADCMERNCAMNPRIKLMSNPDEEMVGPAFT VHTRAGDNLAIYAALKYCQPGDVIVIDDEGDNTRSLIGEVMMSYLRDQKKIAGIVIGGPI RDIDNLRNWKLPIYATSTTPGGPYKEGPGEINVPVACGNVSVNPGDVILGDADGVICIPR KDAPEILPKAQAFHEQDEAKAIAFSKGEVDLSWVDKSLADKGFDIIDDVYRP >gi|227863311|gb|ACKR01000015.1| GENE 21 22574 - 24043 1541 489 aa, chain + ## HITS:1 COG:SA2486 KEGG:ns NR:ns ## COG: SA2486 COG0471 # Protein_GI_number: 15928280 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 7 489 5 472 472 412 47.0 1e-115 MKTLEKVNYKGFIWPLIVGIVLWCITPWRPSGLSVQAWQMFAVFVATIVGCITKPLPIGG TTLAGLVVTVLVGLAPMKDVTNAKGMVVNQGVLSSFGNSAAWLIAMAFIMAHGISKTGLG NRIAYIMIQKFGKKSLGIGYAITGLELILGALIPSNSARTGGVVWPVVESVSKEGYDSKP DDASRKKIGAYIDFTAFHANILSTALFITGAAPNMVAQQLAAQKGYQMSWAGWFFTAIVP VAVLAVIIPFVIYKMYPPEIKETPDAKKWADEKLAKMGPMSTPEKIMMSVFILSIVLWVL SGFFKIPQLDATFVAFLAVTILMITGVLTMQDALKETGAWNILIWLSILMFMAGKLISYG FIDWFSKLVQNGLHGVSWGFVLAILVLLLFYTHYFFASGTAHMTALYLPFLSVAVATGAP LGLSAMLLAFTGAINASTTHYANGPASILATTGYVKQGEWWKMNFVLGLIYMIIFGTVGV LWMKIIGLW >gi|227863311|gb|ACKR01000015.1| GENE 22 24125 - 24916 690 263 aa, chain + ## HITS:1 COG:L34494 KEGG:ns NR:ns ## COG: L34494 COG0596 # Protein_GI_number: 15672802 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Lactococcus lactis # 3 262 4 265 267 104 32.0 2e-22 MKFKTNDDVILHYTDTGDEDKPALIGIPGIGGSCQMWQDLIALFKNDYRFIMLDPRNQGQ SERTYRGQRISRHAVDLEELLVKLNLHDVVAIGNSMGAANIWAYLSIYGKGRLKAMVDLD QSPKMIADKSWKYGFKDLTWDNYPDMLKFDFGKACYHHIDEKMFLAAKKEYQEFPYDPAE NYNCLVEHAEQDWRDMILDTPVPMLVIAGEKSPFFNPEFTQAIKMLNQDVQTAIVPECGH LPQAEQPEKTHEIIAEFLKNSKN >gi|227863311|gb|ACKR01000015.1| GENE 23 24997 - 26052 897 351 aa, chain + ## HITS:1 COG:L0038 KEGG:ns NR:ns ## COG: L0038 COG3053 # Protein_GI_number: 15673170 # Func_class: C Energy production and conversion # Function: Citrate lyase synthetase # Organism: Lactococcus lactis # 15 351 5 346 346 303 46.0 2e-82 MDKVVDLFLNDATTRQKWENLLESLGLNDFSEREVNVIDHTIGLEDEEGNLVGTGSVAGN VLKYIGVKNDADTQGARFNKAVTALTQYLTNDGIFHSFVFTKAKYATSFEHLHFNLLAKT DQAAFLENGTPDVKDFVAEVPEIADQEHKKVAAIVMNANPFTLGHQHLIKMASEENDLVY VFVVANDVSLFSFDERFKLVQEGTKEFSNVKVISGGDYMVSPATFPAYFLKSPDDLIAVQ TVIDAAVFKNQIAPGLNITRRYIGKEPISRTTHFYNVSLAHELGPEIEVIVIDRLEKDGQ IITATKVRQLIKDGNLKEINKFVPETTYEFIKQNMQKLQSKIEKGMNIDGN >gi|227863311|gb|ACKR01000015.1| GENE 24 26042 - 26335 495 97 aa, chain + ## HITS:1 COG:L0039 KEGG:ns NR:ns ## COG: L0039 COG3052 # Protein_GI_number: 15673171 # Func_class: C Energy production and conversion # Function: Citrate lyase, gamma subunit # Organism: Lactococcus lactis # 1 90 1 90 96 91 60.0 4e-19 MEIKTTAVAGTLESSDIQIMISKGSNGIEIDLESEVKKAYGDQIEKVITDTLKAYGLENA KVKATDKGALDCVIKARTLAAAQRATETSDKPDLEVL >gi|227863311|gb|ACKR01000015.1| GENE 25 26336 - 27250 1148 304 aa, chain + ## HITS:1 COG:L0040 KEGG:ns NR:ns ## COG: L0040 COG2301 # Protein_GI_number: 15673172 # Func_class: G Carbohydrate transport and metabolism # Function: Citrate lyase beta subunit # Organism: Lactococcus lactis # 4 302 3 302 304 356 65.0 4e-98 MPYVKNRLRRTMMFVPGNNPAMIKDAGIYGADSIMLDLEDSVSLTEKDAARMLVYEAIKT VDFGGSEIVVRVNGQATPFYDEDVKAMVKAGVDVIRLPKTESAAMIQKLVKDIEHWEDEF DIENGSIGVMAAIESAKGVLNAPEIATATPLMMGLAVSGEDYTADMHTHRYPDGRELEFA RNMVLQAARAADVYAFDTVFSNMKDTEGFYRETNYIHELGYDGKSLVNPRQIQMVNKVFN PTKEEIEQAKNVENSIREAKAKGSGVISLNGKMIDKPVVEKATRVLETAKASNLIDKEGN YIGE >gi|227863311|gb|ACKR01000015.1| GENE 26 27288 - 28781 1660 497 aa, chain + ## HITS:1 COG:L0041 KEGG:ns NR:ns ## COG: L0041 COG3051 # Protein_GI_number: 15673173 # Func_class: C Energy production and conversion # Function: Citrate lyase, alpha subunit # Organism: Lactococcus lactis # 4 497 20 512 512 692 71.0 0 MNLKPFETTEIGHPEVKRVAPKVRVTTGQNKIIDSLDEVIKNNLKDGMTISFHHHFRNGD YVFNLVMDKIISMGYQDLTLAPSSLTGVMNDKVIEAIKKGVITNITSSGMRGSLGDFVSH GGLKNPVIFRSHGNRARSIEEGEIKVDVAFLGVPVSDPAGNANGQDGDAVFGSLGYALMD ARYANKVVLLTDNIVDYPNTPASIQQDQVDYVVKIDKVGDPDKIGSGATRFTKDPKELKI AQMVNQVIINSPYYKQGFSFQTGSGGAALAVTRYLRQSMIDDGITASFALGGITKPTTDL LEEGLVRKVMDVQDFDKGAAQSMANNKNQQEIDASWYADPHNKGAVVNNLDVSILSALQI DIDFNVNVMTGSDGVIRGAVGGHQDSAAGAKMTIITAPLVRGRNATVVPRVETIVTPGSS IDVLVTERGIAINPARQDLVDAFSKVPGLKILDINELQKIAEKQVGVPKPLEYTDRTVAL VEYRDGTIIDTIKEVRD >gi|227863311|gb|ACKR01000015.1| GENE 27 29197 - 29652 674 151 aa, chain + ## HITS:1 COG:lin1603 KEGG:ns NR:ns ## COG: lin1603 COG2707 # Protein_GI_number: 16800671 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 2 146 4 148 153 125 63.0 2e-29 MESWLFLALVLVVALVGKNMSLIIATGVVMVFKLLPFTSKWLPTIQAKGINWGVTIISVA ILVPIATGQIGFKDLIKTFKSPAGWIAILAGIAVAILSRYGVDQLAAVPQVTVALVLGTI IGVVVFKGVAAGPVIASGMAYLVITLFNLHF >gi|227863311|gb|ACKR01000015.1| GENE 28 29682 - 29843 111 53 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00973 NR:ns ## KEGG: LCRIS_00973 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 53 1 53 53 69 100.0 3e-11 MIIVHENTQERLDDYLEHRLRNYEIITPPIPKKPEIVTQDDHKQKNRKQKRDH Prediction of potential genes in microbial genomes Time: Wed May 25 06:07:33 2011 Seq name: gi|227863307|gb|ACKR01000016.1| Lactobacillus crispatus JV-V01 contig00016, whole genome shotgun sequence Length of sequence - 3232 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 34/0.000 - CDS 2 - 827 650 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 2 1 Op 2 3/0.000 - CDS 820 - 2529 1512 ## COG1122 ABC-type cobalt transport system, ATPase component 3 1 Op 3 . - CDS 2533 - 3090 626 ## COG4720 Predicted membrane protein - Prom 3114 - 3173 3.2 Predicted protein(s) >gi|227863307|gb|ACKR01000016.1| GENE 1 2 - 827 650 275 aa, chain - ## HITS:1 COG:SA2475 KEGG:ns NR:ns ## COG: SA2475 COG0619 # Protein_GI_number: 15928269 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Staphylococcus aureus N315 # 3 275 2 275 277 295 58.0 6e-80 MHNESQVLGYQPGDSFIYQLNATTKLVFILLVSVACMVTYDTRFLIAICILSIFLFKEAK IKWSQISFIVKFIVVFMLLNLIFVFIFQPSYGENIYHSKSILIHAGYFTLTLQEVFYLFN LFLKYVCSIPIVLLFLLTTNPSQFAASLNKIGISYKISYAVSLALRYIPDIQNSYWDISA AQQARGNELSKKASLGKRIKGTLNIVMPLIFSSLDRIDTISTAIQLRRFGSKKKRTWYVT QSFKKADYLVMIVAVILVLIVVGLWQLDHGRFYNP >gi|227863307|gb|ACKR01000016.1| GENE 2 820 - 2529 1512 569 aa, chain - ## HITS:1 COG:SP0483 KEGG:ns NR:ns ## COG: SP0483 COG1122 # Protein_GI_number: 15900398 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 1 553 1 545 560 572 54.0 1e-163 MPKTIIEFKDFSFKYDSQAEPTLKQINLTIKQGEKLLIAGPSGSGKSTIGRCINGLIPNL DTGEITGECTINGKNIKDTNLFDLSFTTSTILQDTDSQFIGLTVGEDIAFALENDCQPQN HMKQVVHRWADELGIEHLLKQAPQNLSGGQKQIVALAGVMVDESPILLFDEPLANLDPAS GMKTMALIDRIQKELSATVIIIEHRLEEVLSQPIDRIILINDGEIVADKKPNDLLHENCL EDVGVRSPLYLNALKKANVDLTRIPDLTSVAALPQDPEIAKQLQEWQNNITLSGEKEETH PLLELKGVGHRYSKLQIHPLHDVTATINQGDFVSIVGQNGAGKTTLCRIICGFIDNEGLI LFDGDNLKQFSIKERSDKIGYVMQDPNQMISQKMIFDEVALGLRLRGYDEQTIRTKVYDT LKVCGLYPYRNWPISALSFGQKKRVTIAAILVLNPELLILDEPTAGQDWQTYTEIMNFLK QLNDQGKTIMIITHDMYLLMEYTNRSLAFADGTLIADTDPIKLLTEKALIKKAALKRTSL YNLAIKYQLENSDSFVRAYIDAERDEKHA >gi|227863307|gb|ACKR01000016.1| GENE 3 2533 - 3090 626 185 aa, chain - ## HITS:1 COG:L123147 KEGG:ns NR:ns ## COG: L123147 COG4720 # Protein_GI_number: 15672306 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 4 184 2 182 182 186 55.0 3e-47 MHTKGLSVKNVVAIGIGSAIYVILARFTSIPTPIPNTNIELVFPFLALFASIYGAKVGFI VGFIGHALSDFIMYGQTWWSWVLATAVLGWIIGLAAKRLDLKNGIFGIKQIIFFNIIQII ANILAWIVVAPIGDIIIYSEPANKVFVQGISATLSNGITIMVIGTLLLKAYAGTKIKKGS LRKED Prediction of potential genes in microbial genomes Time: Wed May 25 06:07:33 2011 Seq name: gi|227863305|gb|ACKR01000017.1| Lactobacillus crispatus JV-V01 contig00017, whole genome shotgun sequence Length of sequence - 520 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 520 245 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|227863305|gb|ACKR01000017.1| GENE 1 2 - 520 245 173 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 2 161 131 281 317 99 40 5e-22 LLNIHNYDLPEKLKRNTKIHRIRKNKKKLGRSIEQRPQEVNKRDVFGHWECDLVLGHKTK DDEVLLTLSERMSREFLIIKIPDKTAASVMNAFKSLRKQYSEHWNDIFKTITTDNGSEFA DLSQLEDISKSLVYYAHPYTSCDKGTVERHNGLIRRFIPKGDYIHNYSLQQII Prediction of potential genes in microbial genomes Time: Wed May 25 06:07:34 2011 Seq name: gi|227863303|gb|ACKR01000018.1| Lactobacillus crispatus JV-V01 contig00018, whole genome shotgun sequence Length of sequence - 537 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 35 - 385 279 ## LCRIS_01918 putative protein without homology Predicted protein(s) >gi|227863303|gb|ACKR01000018.1| GENE 1 35 - 385 279 116 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01918 NR:ns ## KEGG: LCRIS_01918 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 116 1 116 116 134 97.0 1e-30 MDKIDSYVRHFLILIALILGLSLVSELREIIAYDSSTIGIISLTTAIICTFASGITLQFH KLNWLTISLILILSAIVILFWFKTYTFGLVVSIFLIYNIIVFLVCVTNIIFQKKVE Prediction of potential genes in microbial genomes Time: Wed May 25 06:07:37 2011 Seq name: gi|227863301|gb|ACKR01000019.1| Lactobacillus crispatus JV-V01 contig00019, whole genome shotgun sequence Length of sequence - 624 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 38 - 535 628 ## LCRIS_00591 putative protein without homology - Prom 557 - 616 8.8 Predicted protein(s) >gi|227863301|gb|ACKR01000019.1| GENE 1 38 - 535 628 165 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00591 NR:ns ## KEGG: LCRIS_00591 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 165 1 165 165 269 98.0 3e-71 MKKKLLLFVSFLAGLLFLVSTPTYASKLPKGYGIAKTFTTPKATRGTWYYREKGDKTISK VKITAHSVDGKKLYVPSQKFFEKNVYNVSAKKRNQFIKKTENIYAAANYKKGFNVNNWVN LAGDGEYYIPVTRTVNGKKVKALRIATGAGPYTAAYAYKTKTLVK Prediction of potential genes in microbial genomes Time: Wed May 25 06:07:47 2011 Seq name: gi|227863276|gb|ACKR01000020.1| Lactobacillus crispatus JV-V01 contig00021, whole genome shotgun sequence Length of sequence - 25573 bp Number of predicted genes - 24, with homology - 24 Number of transcription units - 14, operones - 7 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 4 - 1404 1392 ## LCRIS_00592 putative protein without homology + Term 1406 - 1462 7.5 - Term 1401 - 1438 4.1 2 2 Op 1 . - CDS 1468 - 2409 1194 ## COG1653 ABC-type sugar transport system, periplasmic component 3 2 Op 2 . - CDS 2394 - 2771 353 ## LCRIS_00593 glycerol-3-phosphate ABC transporter - Prom 2898 - 2957 8.9 + Prom 2840 - 2899 8.2 4 3 Tu 1 . + CDS 2935 - 3738 872 ## COG1085 Galactose-1-phosphate uridylyltransferase + Term 3744 - 3792 6.9 + Prom 3741 - 3800 8.2 5 4 Op 1 . + CDS 3828 - 4754 1212 ## COG0524 Sugar kinases, ribokinase family 6 4 Op 2 . + CDS 4754 - 5446 732 ## COG0120 Ribose 5-phosphate isomerase + Term 5458 - 5490 1.0 + Prom 5482 - 5541 8.8 7 5 Op 1 . + CDS 5578 - 7587 1934 ## COG3158 K+ transporter + Term 7594 - 7645 2.3 + Prom 7589 - 7648 4.8 8 5 Op 2 . + CDS 7669 - 8595 1082 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase 9 5 Op 3 . + CDS 8595 - 9320 731 ## COG2188 Transcriptional regulators + Term 9324 - 9381 10.3 - Term 9312 - 9369 1.1 10 6 Tu 1 . - CDS 9414 - 10241 791 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 10262 - 10321 4.7 - Term 10285 - 10317 2.3 11 7 Op 1 . - CDS 10363 - 10722 286 ## LCRIS_00601 hypothetical protein 12 7 Op 2 . - CDS 10728 - 11492 469 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 11643 - 11702 12.6 + Prom 11678 - 11737 8.8 13 8 Op 1 . + CDS 11792 - 14191 2603 ## COG3957 Phosphoketolase + Term 14213 - 14249 4.0 14 8 Op 2 . + CDS 14258 - 15106 834 ## COG4667 Predicted esterase of the alpha-beta hydrolase superfamily + Term 15107 - 15169 4.7 - Term 15094 - 15155 11.0 15 9 Tu 1 . - CDS 15162 - 15968 733 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 16101 - 16160 6.9 + Prom 16291 - 16350 7.5 16 10 Op 1 3/0.000 + CDS 16577 - 18457 1923 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 17 10 Op 2 . + CDS 18519 - 19328 467 ## COG1737 Transcriptional regulators 18 10 Op 3 . + CDS 19315 - 19812 431 ## LCRIS_00608 hypothetical protein 19 10 Op 4 . + CDS 19833 - 20318 665 ## COG2190 Phosphotransferase system IIA components + Term 20371 - 20410 6.0 + Prom 20346 - 20405 3.4 20 11 Op 1 . + CDS 20437 - 20703 311 ## LBA0610 hypothetical protein 21 11 Op 2 . + CDS 20775 - 21431 817 ## COG0778 Nitroreductase + Prom 21441 - 21500 5.6 22 12 Tu 1 . + CDS 21534 - 22892 1571 ## COG1253 Hemolysins and related proteins containing CBS domains + Term 22901 - 22944 6.0 + Prom 22897 - 22956 11.4 23 13 Tu 1 . + CDS 22999 - 23568 572 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase + Term 23594 - 23628 3.2 + Prom 23646 - 23705 7.4 24 14 Tu 1 . + CDS 23741 - 25510 1794 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Predicted protein(s) >gi|227863276|gb|ACKR01000020.1| GENE 1 4 - 1404 1392 466 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00592 NR:ns ## KEGG: LCRIS_00592 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 466 1 466 466 752 99.0 0 MTIDYRKDIIDLMQATGSDPQSLKQSMIALKIISKIYNQAVLGNSPENKNEVVKIAEKAD QTVKNEPEIKTENKLENKTEIETKKENDENTVEKIKPKKTKEELEKEKAKKEEAAKALSP TVLKNKNKYATITPIPKPVVKKIIPVAKPKEKQYEIRRKLLGAEAVDENGHSVQYFNEHL TRIEKLENGDTVTLLDHLNDSGNRPIIKVEHHAKSFAPDEEIIEFGPAVVHRDSFGLYIK QDSNGKNLSQVNPEKAILYLDMNTVSHFNLHENDLISIVWRVSDPSFIRVRWRYAEAEVT IPEKKEKPDKNKETEKHKTKGRHKSLLHQLEKKEKQSSEKQNEDYASRIDFDLDKKRVTV VVGDKSLTSNLAKVIEAHNGVARIIEMKQASNVLRACKESNYVILIQSYIKHSISQILIN SPHKSYSIAMATTAGQLAVEKALYRARYKLNVTDNDQIQYPFLVNN >gi|227863276|gb|ACKR01000020.1| GENE 2 1468 - 2409 1194 313 aa, chain - ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 5 293 99 408 419 97 26.0 2e-20 MLVNLTPYINNSEIGWGSYAKSGIKKALWDGANINGTQYGVPFNKSVEVLFYNKTLLDKY DVKVPTNMSELASASAKIYRESHHKVRGVGFDALNNYYMMQMKETYGKDFNKNLNFAAKD SVKAINYYANGVRAGYFMQAGTEKYMSTPFNNGRVAMFIGSTANEAYLKQGLKKGYTYGV AARPSTMNVQQGTDIYMFKKATAMQKSAAFKYLKFLTSKSSQLYWAKQTGYMPVNTAAIN DKVYQSAKNSKIPAIIAKTSKNLYFLPVTKNATAAYDQVNANMQTILAKASKKQSWNSDI KTGKDKLDAAWKQ >gi|227863276|gb|ACKR01000020.1| GENE 3 2394 - 2771 353 125 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00593 NR:ns ## KEGG: LCRIS_00593 # Name: not_defined # Def: glycerol-3-phosphate ABC transporter # Organism: L.crispatus # Pathway: ABC transporters [PATH:lcr02010] # 1 102 1 102 434 161 100.0 5e-39 MKFYKKLVLTGAAALAVLGLSACSNNNSSSSSSNKKIPTKINKKTTVTFWYSLTGNAQSS LQKLTKDFEKKNPNITIKLQSQGGNYSDLQSKLVSGLQSPKDYRQLLKLILAGFTMLPRT ICLLT >gi|227863276|gb|ACKR01000020.1| GENE 4 2935 - 3738 872 267 aa, chain + ## HITS:1 COG:L51063 KEGG:ns NR:ns ## COG: L51063 COG1085 # Protein_GI_number: 15672818 # Func_class: C Energy production and conversion # Function: Galactose-1-phosphate uridylyltransferase # Organism: Lactococcus lactis # 3 258 6 254 261 229 43.0 5e-60 MDKNPLVYEYSIGKRKPYDYDYGNRQGNQNAGCPFCDVQHLVNIYEKDGDKIWLKNKYPT LKDTNQTILIESSDHQGDISTYTREDNQELMKFGLKCFQKMNNSGRYQSVLWYKNFGPKS DGSLTHPHMQIVGLYHKDGYHDIGADNFKGFEVGRSGSVEMNLSARPVQGYQEVNILTHD NTNLDTWADLIQKGTQYVRSVLSHGVDSYNLFFYPINDGQGTCCKIIPRFYASPYFVGYK ISQVDDSDTLKWEAERLKGFVNGGILQ >gi|227863276|gb|ACKR01000020.1| GENE 5 3828 - 4754 1212 308 aa, chain + ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 3 302 4 303 304 236 46.0 4e-62 MKKIVVIGSSNVDTTLHVKDFPKPGETINALDITTAGGGKGANQAIAAAKSGAETYFINR VGEDSEGNFITHQLKSYGVDTTYVQTTMGAKTGHAYITLNEAGQNDIIIDHGANYELTVE DIRAAGDLIKSWDCVIAQFEIPLDVTLEAFKIAKKAKKITILNPAPAVDEIPKELLQYTD IITPNETESAKITGIAIKDNSTLATNAEKLHMLGVKNVVITYGDKGAYISTPDVEELIPT YKVEAADTTGAGDTFIGYLVSNLNSDLSNFEEAAKIASRASSIAVQRLGAQPSIPTEQEV KQAMEDDE >gi|227863276|gb|ACKR01000020.1| GENE 6 4754 - 5446 732 230 aa, chain + ## HITS:1 COG:SP0828 KEGG:ns NR:ns ## COG: SP0828 COG0120 # Protein_GI_number: 15900715 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 7 223 2 217 227 209 51.0 5e-54 MNKQEQDRLKKEAAEKAAAMVKSGMVLGVGTGSTVAFFIDALGKRKDEDGLKLKAIVTTS NRSKKQLEGLGFKVSELADIDQADLTVDGADRVADNLDGIKGGGGALTLEKNVAINSKKI IWIVDESKLVHRLSGFPLPVEVLPISCEQTFKRFEQEGLKPRWRMDGNQRYVTHYGNYII DLAADPVPAPHGLADYLDHTVGVVEHGLFLDMCDEVIIAHSDGTIEDKKK >gi|227863276|gb|ACKR01000020.1| GENE 7 5578 - 7587 1934 669 aa, chain + ## HITS:1 COG:SPy1414 KEGG:ns NR:ns ## COG: SPy1414 COG3158 # Protein_GI_number: 15675333 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Streptococcus pyogenes M1 GAS # 9 665 11 660 666 657 52.0 0 MNKISGKQKVSFTGLLIAIGIVYGDIGTSPLYVMKSIVTENGGISNVNRELIVGSISLIF WTVTLLTTVKYVIIALKATNHGEGGIFSLYALVRKRAKWLVIPALIGGAALLADGTLTPA VTVTTSIEGLKNMRFGDVIPVSSQDMVILITIVILVLLFSIQRMGTSVIGKAFGPIMLLW FTFLGLIGLMNLSHDWSLLDAINPIHALRILFSPANKVGILILGSIFLATTGAEALYSDV GHVGKSNIMGSWPYVFVCLILNYLGQGVWILQNANYYAGNGDFNPFFEAVPSSLRLFAIA LATIAAIIASQALITGSFTLVAEASSLKFLPRMNIIYPSNEKGQIYIPSINKMICVITVA IVFLFRTSHHMEAAYGLAITVTMLMTTILLFEYLGKKGTALSIRCIFLVVFAFIEGMFLF SSLTKFLHGGYVTVLIAGFILAIMYVWFYGNKIRDKREEQNAYVRLDEYTDMLTELSHCD DYPVYATNVVYMAKVKYNKFIKREMLYSILDKRPKRAKAYWFVTVNVTNEPYTAEYAVNT YGTKNVINVQLYLGFRKQTSVNVYLRQIVHDLIADGTIEAQPQQFTTTPGRDVGDFAFVI VNDVISPLTKLTGYEKFMVEARVWLQNLSSNPASWFGLEYADTVVERVPLVLGDHEEEHI QRIKPKKEK >gi|227863276|gb|ACKR01000020.1| GENE 8 7669 - 8595 1082 308 aa, chain + ## HITS:1 COG:STM0051 KEGG:ns NR:ns ## COG: STM0051 COG1957 # Protein_GI_number: 16763441 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Salmonella typhimurium LT2 # 6 295 7 297 306 214 39.0 2e-55 MNKKPLIISTDPGIDDIAAMTISLFAQELDVRMIVPTWGNVALKYTLQNTLNLEKFLHTK VPVVVGANQPLVAPMISAASVHGKTGIAGFEFEQADDSLIEPGLAATLMAKEIKSSPEKI TLMGIGPLTDFALLFKQYPEVKENIAEIVIMGGNIGHGNHSPFAEYNIAGDPEAAQVVFH SGLLVKVAPLEIGNKAHLTPEQMDKVKTCGEVGNMLYSLFSNIHEPDGDPRIKIYDPTAV GIMLHPEMFTMKKANVNIELRGQYTYGASVMDFMDQEHANAEIATDVDLDKFATWFIDSI KKADQGRE >gi|227863276|gb|ACKR01000020.1| GENE 9 8595 - 9320 731 241 aa, chain + ## HITS:1 COG:SP2020 KEGG:ns NR:ns ## COG: SP2020 COG2188 # Protein_GI_number: 15901841 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 6 236 5 236 242 135 33.0 8e-32 MADYVYRTVMHDIKQNILNNQYKGMRLPDERSLAEHYQVSRSSMKRALELLAQQGIVFKK RGSGTFINPLYLRKQAMFRYDGSNLGITDSFKVPGKKQQIKLLDFHVIKATKEIAEDLFL NENDFVYEFKRLRLLDEQPFLIETGYLPIKIVPELKPETLQKSLFNYLEDEQGKTVTKSF LNITVEPSNEEDQQKLNLKPTEPVGVMEGIFFLDDGTPFEVSNMRVHYHYMNFNTFVNLG K >gi|227863276|gb|ACKR01000020.1| GENE 10 9414 - 10241 791 275 aa, chain - ## HITS:1 COG:lin0440 KEGG:ns NR:ns ## COG: lin0440 COG0561 # Protein_GI_number: 16799517 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 7 275 3 269 270 162 32.0 6e-40 MTKLPFKVVAVDMDGTFMHDDQTFDHKRFDRILTELHKKGIHFIVSSGRPYTRLRKDFAG FLNRIDMIADNGSLLLQDNQIISTHLLTYKTTLDLISFIKEHYSKSSIIVTGINNSYTTI NASPSFKQTMNFYYPDRIEVTDLAAAINPQDMITKITLSYQYDFSAELEKEFNQTHAEKI HCTSSGFGLLDIVPYSVNKGSALKYFLRYFGAKPNELIAFGDGMNDAEMLKLADYSYAMA NAEDQVKKIAKYEAPSNNDDGVLEVLDSYLAKVEK >gi|227863276|gb|ACKR01000020.1| GENE 11 10363 - 10722 286 119 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00601 NR:ns ## KEGG: LCRIS_00601 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 119 1 119 119 204 97.0 6e-52 MFSLFNQKKQSESREVYQDLKNFYNSFFSNIYNEMNIGRYRQIRDAIGLVLNKFDSGDHP LEYTSKLVMYIQARIAMNHLHLTHEQQDLMKKLSDATKYVNLSYVYLSPLTSVEQFVNI >gi|227863276|gb|ACKR01000020.1| GENE 12 10728 - 11492 469 254 aa, chain - ## HITS:1 COG:BS_glcR KEGG:ns NR:ns ## COG: BS_glcR COG1349 # Protein_GI_number: 16080683 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 1 237 1 235 258 127 34.0 2e-29 MTQEERLIQIKQLLKKKHQLSTRQIAAHFNVSFDTARRDVIHLTETGQAIRVHGGLMEIN CNSVPDFLARNQVQSPVKMKMARMAKRFVHPGQCDFIGSSTTLKQLCPMLNGIDMQIVTN SIDNALSLLAIEIPSVRLLGGVINKKQRFIYSETALETLRQIHFNTAFIGGSRIRDDGVY TPSMADSKIVETAASRANQVVLVAEKYKFTNQSSSPYMSVPLNQIDVLITDTPLPEELKH HFNPKTQIIPVLKE >gi|227863276|gb|ACKR01000020.1| GENE 13 11792 - 14191 2603 799 aa, chain + ## HITS:1 COG:CAC1343 KEGG:ns NR:ns ## COG: CAC1343 COG3957 # Protein_GI_number: 15894622 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoketolase # Organism: Clostridium acetobutylicum # 7 795 15 794 796 935 57.0 0 MAVDYDSKDYLKSVDAYWRAANYLSVGQLFLMKNPLLKTPLVAEDVKPKPIGHWGTIAPQ NFIYAHLNRVLKKYDLNMFYIEGSGHGGQVMVSNSYLDGSYTERYPEITQDQKGMAKLFK RFSFPGGVASHAAPETPGSIHEGGELGYSLSHGTGAVLDNPDVIAAVEIGDGEAETGPLA ASWFSDKFINPIKDGAVLPILQINGFKISNPTIVSRMSDQELTEYFRGMGWDPHFVSVFK GGRFDGEKDPMQVHEEMAKTMDEVIEEIKAIQKHARENNDATLPHWPMIIFQCPKGWTGP KKDLDGNPIENSFRAHQIPIPVAQGDMEHADMLTDWLESYKPEELFNEDGSPKEIVTENT AKGEHRMAMNPITNGGLDPKRLNLPDYRKFALKFDKPGSMEAQDMVEWAKYLDEVAKLNP TTFRGFGPDESKSNRLFQLLDDQKRQWEPEIHEPNDENLAPSGRVIDSQLSEHQDEGFLE GYVLTGRHGFFATYEAFGRVVDSMLTQHMKWLRKAKEQYWRHDYPSLNFVATSTVFQQDH NGYTHQDPGILTHLYEKNRPDLVHEYLPSDTNTLLAVGDKALKDRECINVLVTSKQPRPQ WFSIEEAQKLVDKGLSYIDWASTDKGAKPDVVFASTETEPTIETLAAIDILHKKFPDLKI RYINVVDVMKLMDPKDNKNGLSTEEFDRLFPKDVPVIFAWHGYKSMMESIWFARKRYNVH IHCYEENGDITTPFDMRVLNHLDRFDLAKDAVESIPALKGKNADFISHMDYLLEKHHQYI RDNGKDMPEVTEWQWSGLK >gi|227863276|gb|ACKR01000020.1| GENE 14 14258 - 15106 834 282 aa, chain + ## HITS:1 COG:FN0508 KEGG:ns NR:ns ## COG: FN0508 COG4667 # Protein_GI_number: 19703843 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Fusobacterium nucleatum # 1 282 1 281 281 225 42.0 7e-59 MKSGLVLEGGAMRGLFTAGVIDVFLENDITFDLAIGVSAGAAFGVNLKSEQKGRVLRYNM RFAGKPYYASWKSWRRSGNLYAANFCYHILPDKLDVFDKEKFMTNPMDFWCVATDAATGE PVYHQLHDAGYVDLEWIRASSSIPFFAHPVAIHGHYYFDGGVSDSIPYDFLEQQNCDKKV VIATQPKSYRKKQSKLYPLEKVILRKYPAVVKKLATKAEDYNAVLDQMVKDEAADQAFII RPPFPLEIGTLETDKKEMRRVYEVGRVEAEKVLPALREYLNK >gi|227863276|gb|ACKR01000020.1| GENE 15 15162 - 15968 733 268 aa, chain - ## HITS:1 COG:STM3831 KEGG:ns NR:ns ## COG: STM3831 COG0561 # Protein_GI_number: 16767116 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Salmonella typhimurium LT2 # 1 268 1 268 281 170 36.0 3e-42 MTIKFIALDTDGTLLNSTGKILPSTKKAVKTALDQGIKVALCSGRPIAGLKHFMDELGII GPNQYAITLNGAITRTADGKIMTKDLVSNRLYRKMYAFANEHHLPFNVVSPDSKIITGDH DVDLMVYTQAYENSATLYIRELDELPSDFEIAKGCFATKAKLLDQWEDKIRQEFGQELYI VRADDCFLELLHPNVNKGTGLKELTEKLGITPEEVMAIGDERNDITMFDFAGTAVCMGNG SEEAKKHADYVTTSNDEDGISNAFEKFL >gi|227863276|gb|ACKR01000020.1| GENE 16 16577 - 18457 1923 626 aa, chain + ## HITS:1 COG:BS_glvC_1 KEGG:ns NR:ns ## COG: BS_glvC_1 COG1263 # Protein_GI_number: 16077887 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus subtilis # 1 451 1 450 452 501 54.0 1e-141 MMQKIQRFGAAMFVPVMLFSFAGIVVALGSLFNNPTLFGLIANPGTTWNSVWDTISAGGW TVFNQEGILFTVGLPIGLANKARGRAAMEAVIAYLTYNYFIGAMLTHWGAAFGIPNFDKI QIVANATNHGLTNIAGIKTLDTSILGALVVALIVVWLHNKYFDKKLPDWLGTFQGSTYVY ALAFFVMIPLALITCWGWPKVQMGITSMQHFIVDSGFIGVWIYQFLNRVLIPTGLHHLVY IPFQFGPAVVAGGLQPYWLKHLAEYAASTKPLSQIASVEGFQLYGNEKVFLVPFICLAFY ATAKKNKKKQTSALLIPAALTSVLAGITEPIDFTYLFAAPVLWVVYSVLSATMNTVMWAF GLRGFMSDGAIGIASMNWIPLWPNHWKTYVMEFIVGIIFGIITYFVFKIMIEKFNYITPG READDQDVHLLSKKEYKAKKAAEAAGKDANDPYIERATAYLELLGGPSNITELSSCATRL RVSVADPNKVASDAAFKANKAVNVVHHGKAIQVIVGLDVPQVLDEMNTLMQQQGGDAKVS TEQDNPYIERATGIVDLLGGDSNIQDVIACSTRVRTHVVDPKKVAPDSEFKKIADSYEVQ HKDNNEVDIVVGLDADQVVDQMKQLL >gi|227863276|gb|ACKR01000020.1| GENE 17 18519 - 19328 467 269 aa, chain + ## HITS:1 COG:BS_yfiA KEGG:ns NR:ns ## COG: BS_yfiA COG1737 # Protein_GI_number: 16077886 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 4 264 3 254 254 102 28.0 7e-22 MANLRSMVYDNSHKLNDSEKQIVQYVLNNPRDCSKLSLAKLAKKLYVSESAIFRLCKKLG LSGYSELKFDLVELAESKQKPIKIENNFARELSKVNSDVLKYFKQRDFNSLYRDLDNAGT IYIYSTGWQQELIAQYLAHELFVVGKHATVLPSALEELKAAGRFAQKGDVLFIISFTGDN KTINEEITKLELVNDKFKYVSFTNLKQNKLASLVQHNIYFPTIAFTDDADFKSGKVAFTP AYFLIDLVISEYVAWQQSQGEDVEINVGN >gi|227863276|gb|ACKR01000020.1| GENE 18 19315 - 19812 431 165 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00608 NR:ns ## KEGG: LCRIS_00608 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 165 1 165 165 266 99.0 2e-70 MWAISKRKVGNFIDRITESMHLDTKKILTWYSYVLFIAPLLFWAMIALRSGASGQSIRMM IMKQPMIAISTIVAIVDFILGYYMLLNHKQFLINRQTYRFLMGSQMIAQLFVGNLLCVVL AILGFYRARALKKTQDGVSRVIIAISLTAAGLLLASFMLILLLEF >gi|227863276|gb|ACKR01000020.1| GENE 19 19833 - 20318 665 161 aa, chain + ## HITS:1 COG:SP0758_3 KEGG:ns NR:ns ## COG: SP0758_3 COG2190 # Protein_GI_number: 15900652 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Streptococcus pneumoniae TIGR4 # 13 160 4 151 151 139 47.0 2e-33 MFNFFKKKNKGIEVDAVVDGDIMPITDVKDDVFSTKMLGDGYAIKPKDNHIYAPVDGSIS TLFPTKHAIGITNDQGIEFLIHLGLDTVELKGAPFTVNVSQGDKVKKGQPLATMDFQMIT DKGYDDSCIVVYTNMDLIKSVTPIEKGSVEHSQKVQTIELK >gi|227863276|gb|ACKR01000020.1| GENE 20 20437 - 20703 311 88 aa, chain + ## HITS:1 COG:no KEGG:LBA0610 NR:ns ## KEGG: LBA0610 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 85 1 85 88 137 81.0 1e-31 MKRYRPNTKAVIVGIVLMLIGIACWVIKASFIPKGADFLFPIGLLVICLGGLTLTITAFI AMRKNDLAMSAYLKKQAAEKKKQEKSNN >gi|227863276|gb|ACKR01000020.1| GENE 21 20775 - 21431 817 218 aa, chain + ## HITS:1 COG:CC0324 KEGG:ns NR:ns ## COG: CC0324 COG0778 # Protein_GI_number: 16124579 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Caulobacter vibrioides # 1 212 1 213 220 83 28.0 3e-16 MNFKDVYEKEHVTRKFTNRKLQEKTIAGIVKMAQQSPSLLNSQPWRAYVLMGDALSKFKA ASAKKIDDKEVAHEDFASMLSLDWDTYPSRNMATMGASQSFFFRNKLQLFNDANKTMFNA PAIIFLTVPKKSPAWSVFDLGIFAQSIMLLAINRGLGVMPAHSMVSYPELVREYAQIPDD EAVGMAIAVGYIDKNAEINDPKFIPKRVPFNEIYKVVE >gi|227863276|gb|ACKR01000020.1| GENE 22 21534 - 22892 1571 452 aa, chain + ## HITS:1 COG:L84992 KEGG:ns NR:ns ## COG: L84992 COG1253 # Protein_GI_number: 15673816 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 6 427 1 419 430 254 33.0 3e-67 MSPAQIVTNLVATLLIFIVASFFVAAEFALVQTRPSQLEDMLAKGQGNKKKLRRALHMTH NLNEYLSTTQVGTTLVGVVLGWFSADTFATILEDLFHLTPMNDSLIKSVSAILGVVLLTY LEVVLTEVVPKNIAIDKPVPMMMGIVTPLHIFHTIVYPFVWLLNTSSNGILKLMGFTPAD EENEVYSQSEIIKLSRNAVHGGSLDKEDLTYMERAFELNDKVAKDIMTDRTRLSVLDSTD TIAYALKKYLEEGYSRFPVVRDNDKDDVVGYVYAYDIVQQSQIDGNVPVTRIIRTIITVP ESMPIQDILHLMISKHTPIVLVVDEYGGTSGIVTDKDIYEELFGSVKDEIDDVSDDYIIK DKDGQVHVSGKTTLYDFERFFHTDLKAFQDSDIITIGGYMMEHYPNLKKGESIELEGYKF TLDSIEQGFMRWFIVEPIKDKDQKDDQSKDEN >gi|227863276|gb|ACKR01000020.1| GENE 23 22999 - 23568 572 189 aa, chain + ## HITS:1 COG:lin0251_2 KEGG:ns NR:ns ## COG: lin0251_2 COG0634 # Protein_GI_number: 16799328 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Listeria innocua # 11 182 5 176 179 177 51.0 1e-44 MAKGDNIDQIIDHKLFTEDDIHEMCVRLGKQLTEDYAGKKPVVVGALKGAIYFLTDLTRQ MDVAHQLDFLDVSSYGDGFESTGKVKIVSDLVTDVKDRDVLIVEDIVDTGLTLKFMKEHI MARGAKSVKCCAMLNKEARRTTDVELEYYGSKVGNEFVVGYGLDFLNMYRNLPYVGVLKP EVIQHYANK >gi|227863276|gb|ACKR01000020.1| GENE 24 23741 - 25510 1794 589 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 67 564 1 477 484 132 27.0 1e-30 MTKQTIKAQADGRNGQIDFEIDLENNKISDVKVTKNSETPAIFNQTFGKLKKNIIDNQSF DVDAVSGASLMTQAMLDSGKKALAENNIALDGKKPEVVHEERQLNVDVAVIGSGMAGLMA ASRALSMGKKVVVLEKNGYLGGATILNGSNVVGTGSKVSAELFGETAKKDSPNRLVQDIT RECRGTNYPMLSKLLANNIGKAVDFITEFANLTYQKAETQTVEHSVYRQIEMPSESSYEL VTKVAEAFEKKGGQIILDARVEKLNKDKAGKLVSLTAEGKHQTINVNFKSLVLAAGGWGA RDYQAHKTDIPYYGPMTSTGDYLDFAKNMNLVTRNLDWYKVYPHGLEVEPGIAKLTTYST KEATDMGAIFVNTDGKRIVNESAPYTHFRDAIAEQKGKVAYIVMDQRTWDRFYELMLKYG FTKEEVQSFFDLVGEKSPVLVKGDLKTVAEKAGIDYQTLKETVDNYTEDVKADYDPEFGR DKKFMHEFEGDTYYVIEQKLLFCTTLGGYETTDQMQLLDNDMNPVSNFYAAGEIVGGANG HDSMPSMMNSWSYASGFVAGTTAADNTNYNYFTVSNEQEADAVSGASEA Prediction of potential genes in microbial genomes Time: Wed May 25 06:08:04 2011 Seq name: gi|227863272|gb|ACKR01000021.1| Lactobacillus crispatus JV-V01 contig00022, whole genome shotgun sequence Length of sequence - 4035 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 110 - 421 370 ## LCRIS_00617 putative protein without homology - Prom 574 - 633 8.9 + Prom 609 - 668 10.9 2 2 Tu 1 . + CDS 754 - 2634 2410 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 2659 - 2689 -0.7 3 3 Tu 1 . - CDS 2686 - 3987 1471 ## COG0531 Amino acid transporters Predicted protein(s) >gi|227863272|gb|ACKR01000021.1| GENE 1 110 - 421 370 103 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00617 NR:ns ## KEGG: LCRIS_00617 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 103 1 103 103 185 100.0 4e-46 MNSIEQIDTENDTKSLISSFINLIGLAKLTKQVNFKRKSTVSLTMIISWLMSVHFARLSL FRAKSDKRFSVRTARNVLNDGRINWQKLLCLIAARLIGCFKHP >gi|227863272|gb|ACKR01000021.1| GENE 2 754 - 2634 2410 626 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 68 610 1 476 484 228 34.0 3e-59 MKSGKYQVKAKGHGSESMPMEVDIDGDKVTSIKVDSSGETKGVADEVFRRLPKTIVENQT LNVDAVSGATISSHGVIDGVAEAIDEAGGDSTEWKNREKPAATKVEDEEITVDVAVVGAG GAGLAAAVRSIQHGERVAVLEKYPQIGGNTSRAGGPMNAAEPEWQSKFKALPGEKQTLED LANTPIEQIDLEYRFDFERLQRQIKEYIDSGTDYLFDSTLLHEIQTYLGGKRTDLKGNEI HGKYALVHELVTNALNSVKWLQDLGVKFDNSQVTEPVGGLWRRGHKPVEPLGYAFIHVLG DWIREHGVDPYLETRVEKLIIEDGKVRGVIATRADSSTLTVHAKAVILTAGGFGANTKMV QKYNTYWPNIADDSTTTNSPAITGDGINLGLEAGADLFGMGFIQLMPVADPKTGELFTGV VTPPANYIMVNKKGKRFVNEFAERDVLAKAVIENGGLIYQIADDKIKDTAYNTTQESLDA QVKAGTLFRADTLEDLAKQIGMNPAVLVKTIQDYNSYVDRGEDPDFHKNVLGLKCEVAPF YATPRKPAIHHTMGGLVIDTKAHVLNKDGQIIDGLYSAGENAGGIHAGNRLGGNSLADIF TFGRIAANTAYEDHQENDATSGASQH >gi|227863272|gb|ACKR01000021.1| GENE 3 2686 - 3987 1471 433 aa, chain - ## HITS:1 COG:SA1270 KEGG:ns NR:ns ## COG: SA1270 COG0531 # Protein_GI_number: 15927018 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 431 7 437 440 344 49.0 2e-94 MKRQISFGQALATVVGSVIGAGVFFKIGTITAQTGSTSMTLFVWILAGIISIASGLTISE IAASLKINGAIKYLDYTYGRVWGFLFGWAQMIVYFPAQIGALSSIFGVQFVSLFGIKARY SNLIAILLVLFLLGINLIGTKFSSKMQSVITILKIIPIALIIIWGLFNPAKIPAPIIPLT VGTGHSFPTAISQGLLSALFAFEGWIVVTNLANEVKNPEKDLSRAIILGLSAITLIYVLI NYTFMTVLPIDQLTNNNNAAFQASMKLFGQFGGKLVTVGILISVYGAVNAFMLTGMRTPY ILAQDNLLPFSNKIGKANIHTGVPVVGAFIVDAIAIVMILLGNFTVLTDMLVFVMWTFNT MLSVAVIILRKREPELKRPFKVPWYPIIPIISVIGGIFIVVSTIINQFVLSIIGIGLTLL GLPTYYYMQKKNN Prediction of potential genes in microbial genomes Time: Wed May 25 06:08:08 2011 Seq name: gi|227863266|gb|ACKR01000022.1| Lactobacillus crispatus JV-V01 contig00023, whole genome shotgun sequence Length of sequence - 4990 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 66 - 773 556 ## LCRIS_00620 lyzozyme M1 (1,4-beta-N-acetylmuramidase) 2 1 Op 2 . + CDS 776 - 2011 1144 ## COG0513 Superfamily II DNA and RNA helicases 3 1 Op 3 . + CDS 2008 - 3336 1069 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 3468 - 3505 5.1 + TRNA 3386 - 3458 47.3 # Arg CCT 0 0 - Term 3454 - 3492 5.2 4 2 Tu 1 . - CDS 3529 - 3717 142 ## LCRIS_00623 putative protein without homology + Prom 3743 - 3802 4.3 5 3 Tu 1 . + CDS 3823 - 4965 1213 ## COG0381 UDP-N-acetylglucosamine 2-epimerase Predicted protein(s) >gi|227863266|gb|ACKR01000022.1| GENE 1 66 - 773 556 235 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00620 NR:ns ## KEGG: LCRIS_00620 # Name: not_defined # Def: lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: L.crispatus # Pathway: not_defined # 1 235 1 235 235 422 99.0 1e-117 MKRFQHRYTLPAILTLLILAIAFLLIGFFNFKRQTTLPPDANSSAIGIELNQDIDYVDLH KLQSNGVSFIYLKATQGRSYFDENYLSYRDQILGTNLAFGSEISYSNESTPMQHYRYFFK QVGQNTGSLPILIVPAVTTRSARYLRSMGQFAALLQAAGKRVMVKVDHKYQHYFNPQTLF MSSDSKAPNKLKYSFWCYTTNGRVRNVSGLESQVTMYAYNGTVGQYKQKYGQLTQ >gi|227863266|gb|ACKR01000022.1| GENE 2 776 - 2011 1144 411 aa, chain + ## HITS:1 COG:lin1833 KEGG:ns NR:ns ## COG: lin1833 COG0513 # Protein_GI_number: 16800900 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 12 401 15 408 442 200 33.0 4e-51 MYQEKIKQVLIREHKDQPTLIQKESYDAIRNGASLVGLAKTGTGKTLAYALPSLEKAQPG NANSVVIIAPTTELAVQIRHAINPYIHALGLKGVSLVGAGNRKRQEDNLKKKHPEVVVAT PGRFFDFFSSGRIKVNQIKTLIIDEADDILEFTKMELLSALGQNLGPDSQILLFGATDSE ITRDAEQVFNRHFLLVDVRNEQASATKHYFLQVDNQHKIEFLQRMTKLDHFKGILFFDSN KTMMRFAGIFGHTKTKFELLANEFGKERREKALNDLATGKTKLLLATDLAARGLDIPGLT YVINFDIPSETNTYMHRAGRTGRMNAEGYVVTLGDDHDFRDLKKLLADQLQIERVYFAGY HLTTEKPKLKKEKKQAKEQPIKTSTKKNKTKKRKKRNKNKGYHPHYLKGKK >gi|227863266|gb|ACKR01000022.1| GENE 3 2008 - 3336 1069 442 aa, chain + ## HITS:1 COG:lin2856 KEGG:ns NR:ns ## COG: lin2856 COG1455 # Protein_GI_number: 16801916 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 4 429 4 446 454 365 46.0 1e-100 MIRLVRWLEDYVLPLASRWGQIRWLVALRDAFVSLMPITMAGSLAVLIKSLIEAAHDHLG WYAFAFAMQPLVAISNLVWRGTFSLFAFFLALALGYQLAKAFEGNRLAASIVALSSFALS IANIAKIKFHGDNVTLHNAFDISQFSTTGLFTAILFGSLGFFIYYACYKARIILHVTSNL PHAEQAAFDSLLPAMIAIFGVGGINYLFQILTGKYFGNWLLTTIQTPLVKWGQGFGTVIV ITLLVQLFWFFGINGIGVLSPILDSIWMTAQNDNITAISNGNIPPYVWVRGSFDVFAWFG GAGGTLMLIVAILMFSKRSDYRTIAKISLAPGIFNIGEPILLGLPVVLNPVYLIPFVLAP LVNVAFSYWVSIMGLVNPVQVAVPSIMPPVIGPFLACNYDWRAIVLSILNMIVALLIWMP FVKAADKIADTNHPKTFFNPQF >gi|227863266|gb|ACKR01000022.1| GENE 4 3529 - 3717 142 62 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00623 NR:ns ## KEGG: LCRIS_00623 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 62 1 62 62 79 98.0 3e-14 MNSSLLLLITTGLIILIGTFCLVFGMDKNRPAKTRKYLLYTALICVFLVWGLITAIMLQP LG >gi|227863266|gb|ACKR01000022.1| GENE 5 3823 - 4965 1213 380 aa, chain + ## HITS:1 COG:lin2681 KEGG:ns NR:ns ## COG: lin2681 COG0381 # Protein_GI_number: 16801742 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Listeria innocua # 1 379 1 377 379 474 62.0 1e-133 MRKIKVMTVFGTRPEAIKMAPLVLKLKKDDRFEEVTVVSAQHREMLDQVLDIFKIKPDYD FNIMHQNQTLEEITSKVMIDLSKVIKEEKPDIVLVHGDTTTSFAASLATFYQQTTLGHVE AGLRTWNKYSPYPEEMNRQMTDDLADLYFAPTELSKANLLKENHHSDFIFVTGNTAIDAL AQTVQQDYHHEVIDAITPGNKVILVTMHRRENQGEPMRRVFKVMRQVIDSHPDVEIIYPV HLSPRVQKVANEVLGGDPRIHLIEPLDVVDFHNLAKRSYFIMTDSGGVQEEAPSLGKPVL VLRDTTERPEGVKAGTLKLVGTEVDKVREEMLALLENKNEYDRMANAKNPYGDGHAADRI MDDIYYYFNQDSESKPKDFE Prediction of potential genes in microbial genomes Time: Wed May 25 06:08:14 2011 Seq name: gi|227863263|gb|ACKR01000023.1| Lactobacillus crispatus JV-V01 contig00024, whole genome shotgun sequence Length of sequence - 1066 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 530 351 ## LCRIS_00625 cell wall teichoic acid glycosylation protein 2 1 Op 2 . - CDS 523 - 969 604 ## COG0716 Flavodoxins - Prom 996 - 1055 5.8 Predicted protein(s) >gi|227863263|gb|ACKR01000023.1| GENE 1 3 - 530 351 175 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00625 NR:ns ## KEGG: LCRIS_00625 # Name: not_defined # Def: cell wall teichoic acid glycosylation protein # Organism: L.crispatus # Pathway: not_defined # 1 174 1 174 193 298 97.0 6e-80 MANNKKDVTAVDQAQIRRLGQKLIKRHRNLWVYMVFGFVAALINTLVFMVLHSWWHNVMV ISNTIAFIVSNLASFWFNQKAVFINNVDHEHSTWHKLIVFFTYRVISLIPDTLIMLVGLS WLHLNALLVKIIDQILVGVFNYLTTRSVFQKQEHTMIERAKMRIQEQKNKRDSKN >gi|227863263|gb|ACKR01000023.1| GENE 2 523 - 969 604 148 aa, chain - ## HITS:1 COG:SP1297 KEGG:ns NR:ns ## COG: SP1297 COG0716 # Protein_GI_number: 15901157 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pneumoniae TIGR4 # 3 146 4 146 147 103 42.0 8e-23 MKARIVYASMTGNDEDMADILEEDLQDYGFDVETSDVGFTDANDYLDSDLCIFITYTYGE GVMTDELADFYGELKDLDLTGKHFAVMGSGDKTYGEHFCENVFDYEKAFKDCGATEITKP VTIENAPDDDAVAAIDQAAKEMADKLNG Prediction of potential genes in microbial genomes Time: Wed May 25 06:08:38 2011 Seq name: gi|227863195|gb|ACKR01000024.1| Lactobacillus crispatus JV-V01 contig00025, whole genome shotgun sequence Length of sequence - 69650 bp Number of predicted genes - 68, with homology - 68 Number of transcription units - 34, operones - 16 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 28 - 87 9.7 1 1 Op 1 2/0.400 + CDS 125 - 952 1041 ## COG0024 Methionine aminopeptidase 2 1 Op 2 . + CDS 961 - 1884 548 ## COG1295 Predicted membrane protein 3 1 Op 3 . + CDS 1945 - 2847 1182 ## COG1210 UDP-glucose pyrophosphorylase + Term 2855 - 2904 10.2 + Prom 2866 - 2925 7.5 4 2 Op 1 1/0.600 + CDS 2958 - 4121 1219 ## COG0183 Acetyl-CoA acetyltransferase 5 2 Op 2 2/0.400 + CDS 4118 - 5329 1044 ## COG1257 Hydroxymethylglutaryl-CoA reductase 6 2 Op 3 . + CDS 5329 - 6495 1184 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase + Term 6502 - 6529 0.1 - Term 6490 - 6517 0.1 7 3 Tu 1 . - CDS 6523 - 6807 210 ## LCRIS_00633 hypothetical protein - Prom 6848 - 6907 12.7 + Prom 6812 - 6871 8.5 8 4 Op 1 . + CDS 6901 - 7092 187 ## LCRIS_00634 hydrolase of the alpha/beta superfamily + Prom 7113 - 7172 2.5 9 4 Op 2 . + CDS 7192 - 7821 648 ## COG1073 Hydrolases of the alpha/beta superfamily - Term 8220 - 8254 5.3 10 5 Tu 1 . - CDS 8261 - 9649 1577 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase - Prom 9770 - 9829 6.0 11 6 Op 1 . + CDS 9774 - 10586 645 ## COG2137 Uncharacterized protein conserved in bacteria 12 6 Op 2 . + CDS 10595 - 11077 521 ## LCRIS_00637 hypothetical protein - Term 11030 - 11070 2.3 13 7 Tu 1 . - CDS 11078 - 11539 479 ## LCRIS_00638 hypothetical protein - Prom 11696 - 11755 9.3 + Prom 11549 - 11608 7.5 14 8 Op 1 . + CDS 11642 - 12508 1056 ## COG1253 Hemolysins and related proteins containing CBS domains 15 8 Op 2 . + CDS 12508 - 14079 1679 ## COG4108 Peptide chain release factor RF-3 + Term 14094 - 14130 0.4 - Term 14082 - 14118 4.2 16 9 Tu 1 . - CDS 14143 - 14424 417 ## LCRIS_00648 hypothetical protein - Prom 14458 - 14517 8.2 17 10 Tu 1 . - CDS 14570 - 16627 1638 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Prom 16841 - 16900 7.8 18 11 Tu 1 . + CDS 16967 - 17149 90 ## LCRIS_00650 hypothetical protein + Prom 17151 - 17210 7.0 19 12 Op 1 25/0.000 + CDS 17262 - 17528 464 ## COG1925 Phosphotransferase system, HPr-related proteins 20 12 Op 2 . + CDS 17528 - 19261 2166 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) + Term 19270 - 19313 2.5 + Prom 19294 - 19353 7.4 21 13 Tu 1 . + CDS 19485 - 19883 437 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Prom 19905 - 19964 7.3 22 14 Op 1 3/0.200 + CDS 19988 - 20734 709 ## COG4862 Negative regulator of genetic competence, sporulation and motility + Term 20752 - 20788 4.0 23 14 Op 2 . + CDS 20806 - 21558 426 ## COG4469 Competence protein 24 14 Op 3 . + CDS 21470 - 21655 61 ## LCRIS_00655 competence protein + Term 21781 - 21834 -0.5 - Term 21452 - 21491 2.1 25 15 Tu 1 . - CDS 21663 - 22280 397 ## LCRIS_00656 dithiol-disulfide isomerase - Prom 22306 - 22365 10.4 - Term 22316 - 22360 0.1 26 16 Tu 1 . - CDS 22367 - 22975 595 ## LCRIS_00657 adenylate cyclase family + Prom 22966 - 23025 5.3 27 17 Op 1 6/0.000 + CDS 23052 - 23684 815 ## COG2357 Uncharacterized protein conserved in bacteria 28 17 Op 2 7/0.000 + CDS 23681 - 24484 752 ## COG0061 Predicted sugar kinase 29 17 Op 3 . + CDS 24477 - 25382 249 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit + Prom 25386 - 25445 7.3 30 18 Tu 1 . + CDS 25488 - 27263 1925 ## COG4716 Myosin-crossreactive antigen + Term 27273 - 27329 4.2 31 19 Tu 1 . - CDS 27298 - 27843 602 ## LCRIS_00662 putative protein without homology - Prom 28020 - 28079 5.0 - Term 28044 - 28081 2.1 32 20 Tu 1 . - CDS 28102 - 29130 1150 ## COG2706 3-carboxymuconate cyclase - Prom 29167 - 29226 9.2 + Prom 29119 - 29178 7.2 33 21 Op 1 . + CDS 29310 - 29690 593 ## LCRIS_00664 PTS system, glucitol/sorbitol-specific IIA component 34 21 Op 2 . + CDS 29707 - 30894 1176 ## COG0628 Predicted permease + Term 30903 - 30943 2.2 35 22 Op 1 . + CDS 30957 - 31517 760 ## COG0219 Predicted rRNA methylase (SpoU class) 36 22 Op 2 . + CDS 31517 - 31912 508 ## LCRIS_00667 hypothetical protein 37 22 Op 3 . + CDS 31925 - 34348 2213 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 38 22 Op 4 14/0.000 + CDS 34335 - 35549 1039 ## COG0612 Predicted Zn-dependent peptidases 39 22 Op 5 4/0.000 + CDS 35546 - 36790 936 ## COG0612 Predicted Zn-dependent peptidases 40 22 Op 6 1/0.600 + CDS 36804 - 37532 744 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 41 22 Op 7 5/0.000 + CDS 37600 - 38622 894 ## COG1426 Uncharacterized protein conserved in bacteria 42 22 Op 8 1/0.600 + CDS 38640 - 39200 317 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase + Term 39220 - 39263 3.5 + Prom 39217 - 39276 11.4 43 23 Op 1 4/0.000 + CDS 39393 - 40493 1548 ## COG0468 RecA/RadA recombinase + Term 40499 - 40545 -0.4 + Prom 40516 - 40575 7.6 44 23 Op 2 . + CDS 40609 - 42246 1913 ## COG1418 Predicted HD superfamily hydrolase + Term 42248 - 42297 7.2 + Prom 42266 - 42325 6.8 45 24 Tu 1 . + CDS 42350 - 43507 1066 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase + Term 43515 - 43548 4.0 - Term 43501 - 43538 5.7 46 25 Tu 1 . - CDS 43542 - 44204 626 ## COG1739 Uncharacterized conserved protein + Prom 44125 - 44184 4.7 47 26 Op 1 6/0.000 + CDS 44250 - 45530 944 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) 48 26 Op 2 6/0.000 + CDS 45527 - 46222 515 ## COG1040 Predicted amidophosphoribosyltransferases 49 26 Op 3 7/0.000 + CDS 46303 - 46848 811 ## PROTEIN SUPPORTED gi|116513711|ref|YP_812617.1| ribosome-associated protein Y (PSrp-1) + Term 46872 - 46919 4.0 + Prom 46894 - 46953 9.7 50 27 Op 1 6/0.000 + CDS 46990 - 49389 3056 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) + Term 49400 - 49430 1.1 + Prom 49403 - 49462 6.1 51 27 Op 2 . + CDS 49572 - 50570 870 ## COG1186 Protein chain release factor B 52 27 Op 3 . + CDS 50579 - 50851 271 ## LCRIS_00684 putative protein without homology 53 27 Op 4 10/0.000 + CDS 50866 - 51834 936 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism 54 27 Op 5 . + CDS 51827 - 52666 690 ## COG0682 Prolipoprotein diacylglyceryltransferase 55 27 Op 6 . + CDS 52707 - 53726 1458 ## COG0240 Glycerol-3-phosphate dehydrogenase 56 27 Op 7 1/0.600 + CDS 53808 - 54746 584 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 + Term 54768 - 54804 4.1 + Prom 54783 - 54842 7.5 57 28 Tu 1 . + CDS 54913 - 56637 2177 ## COG1109 Phosphomannomutase + Term 56698 - 56731 1.0 + Prom 56658 - 56717 2.2 58 29 Op 1 7/0.000 + CDS 56740 - 58770 1885 ## COG0556 Helicase subunit of the DNA excision repair complex 59 29 Op 2 . + CDS 58760 - 61600 2780 ## COG0178 Excinuclease ATPase subunit 60 29 Op 3 . + CDS 61673 - 62215 582 ## LCRIS_00692 hypothetical protein + Prom 62229 - 62288 7.8 61 30 Op 1 12/0.000 + CDS 62309 - 63190 930 ## COG1660 Predicted P-loop-containing kinase 62 30 Op 2 12/0.000 + CDS 63201 - 64244 752 ## COG0391 Uncharacterized conserved protein 63 30 Op 3 . + CDS 64237 - 65172 675 ## COG1481 Uncharacterized protein conserved in bacteria + Term 65179 - 65217 3.8 - Term 65167 - 65205 7.6 64 31 Tu 1 . - CDS 65237 - 65821 813 ## COG0740 Protease subunit of ATP-dependent Clp proteases - Prom 65939 - 65998 10.7 + Prom 65923 - 65982 6.2 65 32 Tu 1 . + CDS 66016 - 67644 1652 ## LCRIS_00697 conserved protein with bacterial Ig-like domain + Term 67667 - 67714 10.6 + Prom 67668 - 67727 10.7 66 33 Op 1 4/0.000 + CDS 67753 - 68391 199 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 67 33 Op 2 . + CDS 68388 - 69146 442 ## COG0390 ABC-type uncharacterized transport system, permease component + Term 69331 - 69370 7.6 - Term 69316 - 69361 11.4 68 34 Tu 1 . - CDS 69393 - 69551 93 ## LCRIS_00700 uncharacterized conserved secreted or membrane protein Predicted protein(s) >gi|227863195|gb|ACKR01000024.1| GENE 1 125 - 952 1041 275 aa, chain + ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 261 1 252 252 260 52.0 2e-69 MITIKSIRELKGMQASGHLLATMFEGLRDVIKPGISTWEIEEFCQDFVSSRGGRLSEQGF EGYKYGTCISVNDEIAHQTPRKDRILKEGDIVKVDVTCNLNGYESDSCTTYPVGEISEAD KKLIEVTKKAMYLGIDQAVLGNRIGDIGAAIQHYVEDENHYGDVRELIGHGIQPSIHEDP EVPHWGKAGHGLRLREGMTITCEPMVEAGGDWHIDQRTVDDPNDDWVYYATPDGSNAAQF EHTFAITKDGPKILTLQHPYDGLEKYIPHFDEMDD >gi|227863195|gb|ACKR01000024.1| GENE 2 961 - 1884 548 307 aa, chain + ## HITS:1 COG:lin1818 KEGG:ns NR:ns ## COG: lin1818 COG1295 # Protein_GI_number: 16800885 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 12 280 14 276 289 122 29.0 1e-27 MKNGKNHFGLKIGQFISTLRTTLSQGEIFASSIIIAYYILFSIFPIIIIIGNVLPLFHID TAPIAEYLNLVFPDQVSKFIMPIINSLLKTTSTGYISFGIVFAVWSLSNMVNAIRLGENK LYGVHQVELKLSMLNFLWTRTITFVFTGLMILVFTIATLALVFGQQVLNFLGPIFQLPLN EISKIFSYRYPVLILVMMLALWYLNYVLPNIKLKKRVIWPGVFVTVVGWLALSFLFSFYL HHFPITWENYGIVGTFIIFMLWLNIAAVLFLFGVGVNAAIVRNRVGQVEYSAGRIASYIQ KKRRKTK >gi|227863195|gb|ACKR01000024.1| GENE 3 1945 - 2847 1182 300 aa, chain + ## HITS:1 COG:L177590 KEGG:ns NR:ns ## COG: L177590 COG1210 # Protein_GI_number: 15673321 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Lactococcus lactis # 2 298 12 309 313 392 68.0 1e-109 MKVRKAVIPSAGLGTRFLPATKALPKEMLPIVDKPTIQFIVEEAKKSGIEDILIVIGKNK RPIEDHFDSNPELEQDLEEKGKKELLRLTEGITDLGVNLYYTRQPHPAGLGDAIFRARSF VGDEPFVVMLGDDLMEDKVPLTKQLIDRYNKTHASTIAVMPVPHEEVSKYGVIEPENEIM PGLINVKSFVEKPDIDKAPSDYAIIGRYLLTPEIFDILANQKPGRGGEIQLTDAIDTMNK TQRVFAHVFKGERHDVGNKEGYLETSIEYGLKHPEIKEQLRAYIMQLSKKFEAEGKQNKK >gi|227863195|gb|ACKR01000024.1| GENE 4 2958 - 4121 1219 387 aa, chain + ## HITS:1 COG:lin1453 KEGG:ns NR:ns ## COG: lin1453 COG0183 # Protein_GI_number: 16800521 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Listeria innocua # 1 372 1 375 389 346 50.0 4e-95 MKDIYIVAAKRTPFGKYRGFFKDASAIDLGVMALKGTMKAGNIKPADVQALFMGNVLDTG LGENMARQVALHSGMSEASAAVTINEVCGSSLKALRLAQGQMELGDLDLVAVGGSESMTN APYFVKKENKNDPADHLVSTMLNDGLMDAFSGKHMGITAENVAEKYHVSRQDMDEFALQS HKKAAAAVKSGFFDNEILDVEIDGQSLDHDEPIRPDTTLEALSNLKPVFKADGEVTAGNS SPLTDGASMLVLATKEKMKGLGLTPIAKLGEFAEAGFDPALMGYTPYYAVKKLLKKTGHN FDDYDIIELNEAFAAQSVAVARDLQIPTDKLNIMGGAIALGHPLGATGTRLVASAISGLK KRKGRRALVTLCIGGGQAIAYEIENAE >gi|227863195|gb|ACKR01000024.1| GENE 5 4118 - 5329 1044 403 aa, chain + ## HITS:1 COG:SP1726 KEGG:ns NR:ns ## COG: SP1726 COG1257 # Protein_GI_number: 15901559 # Func_class: I Lipid transport and metabolism # Function: Hydroxymethylglutaryl-CoA reductase # Organism: Streptococcus pneumoniae TIGR4 # 6 400 26 423 424 256 41.0 6e-68 MKFYQLEPEARRKLLQDEGIALGQIDDTVLRRLDELSENVVGQLRLPLGVVQNLIVNGQK YWVPMAVEEPSVVAAANHGASIFARNGGVTASSDRQGIYGQIVLKVNNSFSLIELEKEFP HLVELANQKFSSLVRHSGGTRKITAVQKEDLLYLKVLVDPAEAMGANKTNSILEFLAAKL ENYAGVDEKLFAILSNYPSQLATAKVKIDPQTIGGMQVAQRVALLGKIGIDDPYRAVTNN KGIMNGADAVLIATGNDYRAIEAATAVLANHDGQYRSLSKWTMQGSYLVGELTLPMAIGV VGGSIKARHDVRQSFAILGQKITSKTLAEIIVSVALANNLAALLAISTVGIQAGHMKLQA RNVVTELTDDEHERKQLLAAMISEKNYSESHAKELLAKIRKEK >gi|227863195|gb|ACKR01000024.1| GENE 6 5329 - 6495 1184 388 aa, chain + ## HITS:1 COG:lin1454 KEGG:ns NR:ns ## COG: lin1454 COG3425 # Protein_GI_number: 16800522 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Listeria innocua # 1 384 1 385 388 347 46.0 3e-95 MQVGIDQIGLFTPDKYVDMVDLANARKQDPNKFLVGIGQREMSVADITQDAVSMGINATL KFIDKIDKNKVGLLIFGTESSIDQSKSASLFVKTALKLKPEVRTFEVKEACFGLTASLMM ARDFVRVHPEQTAIVIGSDIARYGVNTAGEVTQGAGSVAMLIKADPSILALNNGHSAYSE DINDFWRPNYSRTALVDGKYSTQVYLDFFKKTFTDYKKQKGLKTSDFDAITYHLPFTKMG LKANNIAIEGQDQATMIKLERSFAAAKQLSSRVGNIYTASLYMSLLSLLENGELPAGSLI GLFSYGSGAMAEFYSGKLVEGYEKQVDPTADQAMLDRRKKLTVKQYEDVFNTALLDPEDG LELTSDDEVGTWYFAGTKDHIRQYRVKE >gi|227863195|gb|ACKR01000024.1| GENE 7 6523 - 6807 210 94 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00633 NR:ns ## KEGG: LCRIS_00633 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 94 1 94 94 158 97.0 6e-38 MRLTDLLQLIDDLNLNTKFYLKHDDKLLKWGKLTIAEGKCLLLPGQTAMTKQKLIKLVGR MHGRGIPLLTVIDQKEYSIFGLQIREDTGQAILM >gi|227863195|gb|ACKR01000024.1| GENE 8 6901 - 7092 187 63 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00634 NR:ns ## KEGG: LCRIS_00634 # Name: not_defined # Def: hydrolase of the alpha/beta superfamily # Organism: L.crispatus # Pathway: not_defined # 1 63 1 63 306 121 98.0 1e-26 MKKKLLLSSALIAGAGLFAASEYFFKMAMTPFNKKADSKELSGKDPLYRDKVWFRDFSKK TWT >gi|227863195|gb|ACKR01000024.1| GENE 9 7192 - 7821 648 209 aa, chain + ## HITS:1 COG:lin2180 KEGG:ns NR:ns ## COG: lin2180 COG1073 # Protein_GI_number: 16801245 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Listeria innocua # 1 206 114 317 319 201 45.0 6e-52 MAGFAKMFYDFGYNVLVPDARAQGRSEGKYIGYGWAEKDDILRWIYQVIDQTGTNAQIVI MGQSMGGATAMMVSGMLLPPQVKAFIEDCGYSTVKGEINYQAQNLFHMKAFPRFPIVDLV SGINRVKNGFYLKDASAVAQLNKNTRPFLFIHGGKDHFVPTKMVWQNYAATAAPKQIWLA PLAGHALSYPMYPKQYRQQVERFLQKYVG >gi|227863195|gb|ACKR01000024.1| GENE 10 8261 - 9649 1577 462 aa, chain - ## HITS:1 COG:SP1901 KEGG:ns NR:ns ## COG: SP1901 COG2265 # Protein_GI_number: 15901728 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 23 457 1 433 436 346 41.0 5e-95 MNRKFTHNKPKHEKDVIITIKRLGINGEGIGYYKKKIIFIPGALPDEVVVAKIVKSYPHY IQGELVRIKEKSPDRVDFPEGVDPEIGGLELAHLSYDKQLEFKKNNMLESLRKYHPRNYN KYKVKNTIAAPDPWHYRNKAQYQIEKDHGQLKLGLFAPNSHRLIDLPKMPTQSEDTQKTE RKIKVLIEKLHVPVANYRRHLPGIKTVVVRQSEATKEIQVTLITIGHKIKNLIPLAKEIM KLDHVVSVYQNETEWQNPQVWGNKTEKLLGKNQITEEILGKKFALSPRAFFQLNPVQTIN LYSEALKYLDLTPDQTLIDAYSGVGTLGILAADRVKQVVGIETIPEAVKDAQHNVELNHI KNADYIQGSVEKVLPELQNSGVAINALIVDPPRTGLAKSLIKTLLRVKPETFVYISCNPS TLAQDLVLLSEAYDVRVIQNVDMLPQTPRCEAIAKLVLRKDR >gi|227863195|gb|ACKR01000024.1| GENE 11 9774 - 10586 645 270 aa, chain + ## HITS:1 COG:BS_yfhG KEGG:ns NR:ns ## COG: BS_yfhG COG2137 # Protein_GI_number: 16077919 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 260 4 262 264 126 32.0 4e-29 MIITKVSAQKRPGRYNIFIDGKYAFSAGEKTLAEFVLLKGKELNDEQVEKIRQFDADAKA SDLAAHFLSYEPRTIFEVLQYLKKHEISDEAANSAVSQLNELGYLDDRQYAKLFIKNDLR VGSDGPKSLLRKLTQKGVDPEISQDKLDEIDEEDWLEVGQRVIKSMSHQVGKISQRELER KMRTKLLTHGFDSGISNVIIDAMDLKEDENAQTEALKKQGIKAYKRFRNLPEIERNFKIK KYLFSHGFSSGEIDAFLNGEIIDLDELVEY >gi|227863195|gb|ACKR01000024.1| GENE 12 10595 - 11077 521 160 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00637 NR:ns ## KEGG: LCRIS_00637 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 160 1 160 160 288 99.0 4e-77 MKKNIESRLFIGCPFPAGLMNAQKSFMEANQQMENDETFQKFLADHNLENKRSVLVVSGE DSFMYWYGVLADVAKDEVPTGLMKFELPAAEVAEEVEENQTLVFFNLPLTSTVPNFAKKV VASGIEVHENLGDSDTPYITWDLDMDTKKLAQVMYLKASK >gi|227863195|gb|ACKR01000024.1| GENE 13 11078 - 11539 479 153 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00638 NR:ns ## KEGG: LCRIS_00638 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 153 1 153 153 247 100.0 1e-64 MKKSHVLLVFTFLLLIPYICSLAIIGIGYNALVLHSAELYRTLIGSLVGAIIMFAVKATI QRPVDLLAVQTNDGLLKQLLRFFSIRRRYWLLAANIILDFVLCFAATYIIRALLTLDQIV GSSIGFVLLIMFVSTCLGAYVEYDNLSIDPEQH >gi|227863195|gb|ACKR01000024.1| GENE 14 11642 - 12508 1056 288 aa, chain + ## HITS:1 COG:L64811 KEGG:ns NR:ns ## COG: L64811 COG1253 # Protein_GI_number: 15673796 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 26 285 184 444 449 217 44.0 2e-56 MNSDPGAGTLFGRLKNRLSGDKKVGTKDHLEKEIVTLHESHKIDDTEFSMLEGILDFQGK TAREVMVPRTDAFMVDREVSFQDNLDEILREPYSRIPVYQRDKDKIVGIIHIRTVLRKAK QKGFDNLDYKDVMTEPLFAPETAELGDLLMEMQQTQRQLAILTDEYGGVTGLATIEDLVE EIVGDIDDEVDHTEILFNQIAPNKYIIYGKMPLDDFNEQFGTNLQMEDVDTIAGYVINTL KVIPAKGEKLTVDIGDGMTLTTRRMKGSRLLTVLLTIDESKKEEDSED >gi|227863195|gb|ACKR01000024.1| GENE 15 12508 - 14079 1679 523 aa, chain + ## HITS:1 COG:L0369 KEGG:ns NR:ns ## COG: L0369 COG4108 # Protein_GI_number: 15672331 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Lactococcus lactis # 5 523 3 521 523 709 65.0 0 MDKELADKVKKRRTFAIISHPDAGKTTITEQMLLFGGVIRKAGTVKARKTGNFATSDWME IEKKRGISVTSSVMQFEYRGKRINILDTPGHQDFSEDTYRTLMAVDSAVMVIDSAKGIEP QTKKLFKVVKQRGIPIFTFMNKLDRDGRPPLDLIAELEDLLGIEGVAMDWPIGSGQTLKG LYDIANNRVELYRKNDQDRFLPLDQDGKLPDSEPLSQDPQFQDTLDEIDLIKEAGNKFDR EKIAMGDQTPVFFGSALTNFGVETFLNSFVDLAPAPESHTVNGDEELSPEDPEFSGFVFK IQANMNPHHRDRIAFVRVGSGEFKKGLDVTLARTDKPIRLNNATEFMSSERVQVSDAVAG DIVGLYDTGNFQIGDSIYAGKRKIVYPPLPEFTPELFMRVTAKNVMKQKSFHKGMNQLVQ EGAIQLYRNYQTDEYILGAVGQLQFEVFQFRMKNEYNSEVEMNSIGHRVARWIDPEQLDP RMSNTRNLLVKDRYGNPLFLFENEFAERFFHDKYPDVELTEKL >gi|227863195|gb|ACKR01000024.1| GENE 16 14143 - 14424 417 93 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00648 NR:ns ## KEGG: LCRIS_00648 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 93 1 93 93 140 98.0 1e-32 MHLIDVTNNYSDLVHSQLNTTDANYVKVYSLGNTSVIYTESKDSIGIVLENHDRRVREDE IEFVIKRLIKDYDSSYTLTVDKSRHVIEIHVDK >gi|227863195|gb|ACKR01000024.1| GENE 17 14570 - 16627 1638 685 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 17 678 141 809 815 635 49 0.0 MNNNEFFGDFDDLFNALNGNNNNAANNNNEMRNNDPRMQMGGGAGNGGQNGRSLLDQYGT DLTALAKKGKIDPVIGRDKEIARVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQEIVDG SVPAKLQNKRIISLNVVSLVQGTGIRGQFEQRMEQLIKELQQNDDIILFIDEIHEIVGAG NAEGGMDAGNIIKPALARGELQLVGATTIKEYRDIEKDSALARRFQPVEVKEPSIDETIR ILKGIQKRYEDYHHVHYTDEAIEAAAKLSARYIQDRFLPDKAIDLLDEAGSRMNLTIPYI DKDKMQERINAAEQLKEEALKNEDYEKAAYYRDQIEKYEKVKDQKVDPDKSPVITDKIMD KIVEEKTGIPVGDIQKQEENQLQNLAADLKAHVIGQDKAVEKVARAIRRNRIGFNKSGRP IGSFLFVGPTGVGKTELAKQLAKQMFGSEDAMIRFDMSEYMEQYSVSKLIGSAPGYVGYE EAGQLTEQVRHNPYSLILLDEIEKAHPDVLNLFLQILDDGRLTDSQGRTVSFKDTIIIMT SNAGQGIKNASVGFTAENEDEANESARNNMSQFFKPEFLNRLDDVIEFNELTKPDLLKIV DLMLQNTNNMVKDQGLHIDVTAAAKDKLVEDGFNPALGARPLRRTIQEEIEDNVADFKLD HAQAKNLKADVVDGKIVISDEANNE >gi|227863195|gb|ACKR01000024.1| GENE 18 16967 - 17149 90 60 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00650 NR:ns ## KEGG: LCRIS_00650 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 60 1 60 60 103 100.0 2e-21 MDYQKILDQLVSGEIKEYKVEPKDAFDLQKTIRNYGKRQYITGRAERGGAIVYTATNTDE >gi|227863195|gb|ACKR01000024.1| GENE 19 17262 - 17528 464 88 aa, chain + ## HITS:1 COG:L120335 KEGG:ns NR:ns ## COG: L120335 COG1925 # Protein_GI_number: 15672099 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Lactococcus lactis # 1 88 1 88 88 115 73.0 1e-26 MEKRDFHIIAETGIHARPATLLVQAASKFGSDVNLEYNGKSVNLKSIMGVMSLGVGQNAD VTITAEGDDEKDALDAIADTMKKEGLAE >gi|227863195|gb|ACKR01000024.1| GENE 20 17528 - 19261 2166 577 aa, chain + ## HITS:1 COG:SP1176 KEGG:ns NR:ns ## COG: SP1176 COG1080 # Protein_GI_number: 15901041 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Streptococcus pneumoniae TIGR4 # 1 563 1 565 577 707 63.0 0 MTKTLKGIAASDGIAIAPAYLLVEPDLSFSKSSIADVEAEVARYNDAIKTSTAEVEKIHD IAKESLGDEEAQVFEAHLMILNDPEFTGAIENEIKDSKINAEAALDETAKKFIAIFEGMT DNPYMQERAADVRDVSKRIMAHLLGKELPNPASIDHEVIVVAHDLTPSDTAQLNKKYVKG FVTDIGGRTAHSAIMARSLELPAVVGTDSITKDVKNGDMLIADGLDGDAIIDPSDAQVAD YKQKSEAFLKQKAEWAKLKNEPSVTADGKKFIIAANIGTPNDMPGVKDNGAEAIGLYRTE FLYMDSSDFPTEEAQFDAYKEVIEGMNGKQTIIRTCDIGGDKHLDYWDLPEEMNPFLGVR AIRLSMQYKDIFRTQLRALLRASAYGPLGIMFPMIGTLAELREAKQILAEEKDKLAKEGV KIGDDLQVGMMIEVPAAAVLADQFAKEVDFFSIGTNDLIQYTMAADRGNDNVSYLYQPYN PSVLRLIKHTIDGAHENGIWCGMCGEAAGDNTMFPILLSMGLDEYSMSATSILRIRSLMK KLNTADIKELANEACYVSETAEDNEKLVNNLMKKLNK >gi|227863195|gb|ACKR01000024.1| GENE 21 19485 - 19883 437 132 aa, chain + ## HITS:1 COG:lin2295 KEGG:ns NR:ns ## COG: lin2295 COG1393 # Protein_GI_number: 16801359 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 131 1 131 131 176 70.0 1e-44 MVDLYVSPSCTSCRKARAWLEKHNIPFKERNIFSEPLTKKELLKILRMTENGTEEIISTR SRAFQQLRINLDDLSIDQLLDLVEKNPSLLRRPIIMDDRRLQVGYNEDEIRRFLPRKVRR LELAEAQKIADL >gi|227863195|gb|ACKR01000024.1| GENE 22 19988 - 20734 709 248 aa, chain + ## HITS:1 COG:SA0857 KEGG:ns NR:ns ## COG: SA0857 COG4862 # Protein_GI_number: 15926587 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms; N Cell motility # Function: Negative regulator of genetic competence, sporulation and motility # Organism: Staphylococcus aureus N315 # 1 242 1 234 239 68 22.0 9e-12 MQVDHIDKNTIRVRIDKAELARRGMGMLDLLGNRQKIQDFFYKILDEVDEDHEFANGDPV SFQVMPNNGGLDLMITKVKPDDAQNLRKLMGDSFPKDEQSSTNSDDSKSFFDLDEESTNS NSAPQGPATHNFFNQDDKNNEPTDWRSRKTQAYYFDDLGSLIELADNLKANDLASSLYYL HGQYFLNLAFLDEEYEELKPADAWTIANEFGFKVDSDKMRVVEETGKCLLMQNALGQIRH YFLKAANY >gi|227863195|gb|ACKR01000024.1| GENE 23 20806 - 21558 426 250 aa, chain + ## HITS:1 COG:SP0978 KEGG:ns NR:ns ## COG: SP0978 COG4469 # Protein_GI_number: 15900855 # Func_class: R General function prediction only # Function: Competence protein # Organism: Streptococcus pneumoniae TIGR4 # 19 219 11 211 317 83 31.0 4e-16 MYAAMLNKKLVLAVDEACLVNARQKKLNRDNYHCPHCNKKVILVMSEQKAAFFKHLVKYS NLMGEKEEHHQSKMLLKSALTAAGFPAEVEIPLAEGQLRADVLATAKLAFEVQCAPLSQQ EFNHRHQLYQKIGVKDIWIVGQRHYLKRRLKRTQLIFFRQNKAWGNYYLEINPQRNRFCL KYNVLEEPVANKLVYQSKSFVLDELGIKDFWRFKPFKKRIFFEHCNSKKIFTPANYAKNK VRIENRRDAL >gi|227863195|gb|ACKR01000024.1| GENE 24 21470 - 21655 61 61 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00655 NR:ns ## KEGG: LCRIS_00655 # Name: coiA # Def: competence protein # Organism: L.crispatus # Pathway: not_defined # 1 61 222 282 282 118 98.0 5e-26 MNIATQRKYLRQQIMQKTKLGLKIGEMLYERKLTLDDLPDKVFATWRNPGERDRVSDFLQ K >gi|227863195|gb|ACKR01000024.1| GENE 25 21663 - 22280 397 205 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00656 NR:ns ## KEGG: LCRIS_00656 # Name: not_defined # Def: dithiol-disulfide isomerase # Organism: L.crispatus # Pathway: not_defined # 1 205 1 205 205 398 99.0 1e-110 MFEIFLFINPIGIYCYDTEKQIRKTVDELGVDVCYHYIPIANVCLINDDAIRRRKDDQKL PDISNFSRATYEALENYHAIRLAYGNKKARQYLYELQKNLSKDASAYTPELLKRIANKLH IKDADIQAIKQTDYLRTSIEEDQKLANQWNIKATPTTVIFNEDNEQNGVLLEGPINQQDL VNLMLPDCQKCFSDYLPAEHHLRLI >gi|227863195|gb|ACKR01000024.1| GENE 26 22367 - 22975 595 202 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00657 NR:ns ## KEGG: LCRIS_00657 # Name: not_defined # Def: adenylate cyclase family # Organism: L.crispatus # Pathway: not_defined # 1 202 1 202 202 358 99.0 5e-98 MSKNREIEAKILLNKSVYDQITAAFPIKSDFTQENYYFDTADDLLKNHQISLRIRIYATH AEQTMKVPDPNPVQKNFHEVIEINDKLTHAQAKKLVAKKHFKFTGNIGAYLDNHFANDQK KLHLFTWSKTRRILMNGPQNCELTLDATSYPDNYQDFELEIENTNPALIQTVLTKLEQEY DFEQTAANTNQSKIARASAHQK >gi|227863195|gb|ACKR01000024.1| GENE 27 23052 - 23684 815 210 aa, chain + ## HITS:1 COG:SP1097 KEGG:ns NR:ns ## COG: SP1097 COG2357 # Protein_GI_number: 15900965 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 201 1 201 223 236 57.0 2e-62 MELDWDNFLWPYNEAVRELKVKFRSLRQGFLTKGEHSPIEFVIGRVKTVDSIKEKMKRRV ISPDVIETDMQDIAGIRIVTQFVDDIYKVVDLIHARDDMEVVEERDYIQNAKPSGYRSYH MVINYTVYLPEGPKKLIAEVQIRTMAMNFWATVEHTLNYKYQGVYPDDISARLKSTAEAA YRLDEEMSSIKDEVQEAQKIFTKNKGKEKL >gi|227863195|gb|ACKR01000024.1| GENE 28 23681 - 24484 752 267 aa, chain + ## HITS:1 COG:SP1098 KEGG:ns NR:ns ## COG: SP1098 COG0061 # Protein_GI_number: 15900966 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Streptococcus pneumoniae TIGR4 # 2 262 7 269 272 261 47.0 1e-69 MKVTIAHNNYDETLKTVAQLKKLLQEKGFIFDARYPDVVITVGGDGTLINAFHRYENQVD SVRFIGIHTGHLGFYTDWRNYDIEKMVDALAVTKGEPAKYPLLEIKMLTESGETHYHLAV NESAVKRVSHTLEADVYINDQLFENFRGDGLCVSTPTGSTAYGKSLGGAVIHPRLKALQM TEIASINNRVFRTLSSPIVIAPDQWISIVPNADHFVMTVDGARIDVRNAKKIEYRISRHS IQFDQFGHHHFWSRVQNAFIGDNEKND >gi|227863195|gb|ACKR01000024.1| GENE 29 24477 - 25382 249 301 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 14 277 10 273 285 100 31 2e-20 MTSLFKLIVQERDPKKLGPFLLKNGFSHQALNNAKHHHGMILVNHKRRYTSFNLRAGDEV IFISGEEKKNDFLKPSNNPVSIVLENKNYLVVNKPAGVLSIPSRYEDDDAVVNRLLGYFA QKGQKNLKPHVITRLDRDTSGLVLVGKNAISHARFSKIGKEKFVKKYHAIVHGNFAPNEL TGLIDQPIGKKGSGVKRAVVADGKDAQTAYRVLDQVTGASLVELRLLTGRTHQIRVHMAY LGHPLYGDPLYGIQDGFSRQALNCFYLNFPDPFSQQKCKTIELNDPKDMQELWQKLINKE F >gi|227863195|gb|ACKR01000024.1| GENE 30 25488 - 27263 1925 591 aa, chain + ## HITS:1 COG:SPy0470 KEGG:ns NR:ns ## COG: SPy0470 COG4716 # Protein_GI_number: 15674587 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Streptococcus pyogenes M1 GAS # 1 591 1 590 590 877 68.0 0 MYYSNGNYEAFADAKKPAGVDKKSAYIIGSGLAGLSAAVFLVRDAQMKGENIHILEELPV AGGSLDGAKRPNAGFVVRGGREMENHFECLWDMYRSIPSLEIPGASYLDEYYWLDKEDPN SSNCRLIYNRGDRLPSDGQYGLGKCTNEIVKLIMTPEKELQGETIEEFFSDDFFKTNFWT YWATMFAFEKWHSAAEMRRYAMRFIHHIDGLPDFTALKFNKYNQYESMVKPLLAYLKDHG VQFEYDCHVDNVVVDHEGKQKVAKKIVMTKNGEQSDIDLTPDDIVFVTNGSITESSTYGD QNTPAPITHDKGSSWKLWENLAKQDPDFGHPDVFCENLPERSWFVSATATLENKKIAPYF ERLTKRSLYDGKVNTGGIITVVDSNWELSFTIHRQPHFKSQNPDQIVVWIYALYSDTEGN YIKKRVVDCTGKEIAEEMLYHLGVPESQISELASEENMNTVPVYMPYITSYFMPRHDGDR PDVVPEGSVNIAFIGNFAESPTRDTVFTTEYSVRTAMEAVYTLLNVDRGVPEVFDSIYDI RQLLRAMYYMSDKKKLVDQEMPLPEKLALKTGMKKIKRTWVEELLEEANLV >gi|227863195|gb|ACKR01000024.1| GENE 31 27298 - 27843 602 181 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00662 NR:ns ## KEGG: LCRIS_00662 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 181 1 181 181 305 98.0 6e-82 MVRSHGIEDLAFLFLLNAICVAIPGLSNGIFCVLNGILYGPAWGFIVNWISDILGQIILM ELLQKLYDMKKMSNSKVYKLLTGLKSPMLGLIIGYMIPFIPSATVSYVNIMINKEQRKKQ LIPIIIGVIPFAYLYAYGGDSILHLDGTRLIKVVISFVVIALIAVAILLSLRAIKKRTKK A >gi|227863195|gb|ACKR01000024.1| GENE 32 28102 - 29130 1150 342 aa, chain - ## HITS:1 COG:L11851 KEGG:ns NR:ns ## COG: L11851 COG2706 # Protein_GI_number: 15674136 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Lactococcus lactis # 2 339 4 339 341 243 40.0 4e-64 MKVLIGGYTKKTSKGIYELPITSAANDARLGKAENIISVGGPTYFRKDGNLIFTVNNAGD KGGISVFQLSDQGANEVDHYLTPGSSPAYVGINRTKKLIYTANYHTAVLSVFRYNDSGKL DLVDTVTHKAETLGPRPEQVDGPHPHFFDETPAGNLVSCDLGNDTVDFYRLENDQLKHIA QYKCETGFGTRHIVFSKDGNYFYVVGELSSQINVVKFNEDTWDFENIATYKTIPADFTDH NGAAALYISQDGKYVYTSNRGHNSIAVFKVNDDHTLSLVQRVSTFGDFPRDFNWDKDQRY VVVANQNTDNATLYTRNAGTGSLTPIQKEISVPEGTRVLFTK >gi|227863195|gb|ACKR01000024.1| GENE 33 29310 - 29690 593 126 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00664 NR:ns ## KEGG: LCRIS_00664 # Name: srlB # Def: PTS system, glucitol/sorbitol-specific IIA component # Organism: L.crispatus # Pathway: Fructose and mannose metabolism [PATH:lcr00051]; Phosphotransferase system (PTS) [PATH:lcr02060] # 1 126 1 126 126 241 99.0 6e-63 MKWIANIKKIGKKAVDNKDGMVILFGEGANKDLEDVSVIQKFSTETPVSGFVFKKGDTIT VDGQTYVANYVGPMVESNMKALGHATLFFNRPVSKTPLANAIYFDPDIDQPLPNFKVDDD IVYEHI >gi|227863195|gb|ACKR01000024.1| GENE 34 29707 - 30894 1176 395 aa, chain + ## HITS:1 COG:SPy1011 KEGG:ns NR:ns ## COG: SPy1011 COG0628 # Protein_GI_number: 15675014 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Streptococcus pyogenes M1 GAS # 5 382 7 383 393 250 36.0 3e-66 MENNQHRGGTVFKKWFLDNRFSIVLLNVLLFFLIIWVFNKVSFVLNPAWIFFSAILPPLL LAVIQYYIMNPVVDWCERKFKIPRVVTIIVLFLLVVVALIWIINILVPIAQNQINSLIKN WPHIWNDAVNATQNALQDPRLHSFKGSIKGMIDNTQKTLFKSGQSTINATIGNISSAVSI ITMVAMTLLTAPFILFFMLKDGHQLRPYITKFAPEKWQPSFSKLLYDINYAVASYVRGQI TVAFWVGVMFSLGYILIGLPYGVALAILAGFMNLIPYFGTPLAMIPVIVISIMTSGSMLI KVLIVFAIEQTIESRILSPWVMGNKMEMHPITTILLLIGASAVWGLWGVVFGIPIYAILK IIVSRVYNYYRRESKLFEENAVSSTTGDADHDESE >gi|227863195|gb|ACKR01000024.1| GENE 35 30957 - 31517 760 186 aa, chain + ## HITS:1 COG:L161988 KEGG:ns NR:ns ## COG: L161988 COG0219 # Protein_GI_number: 15673131 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Lactococcus lactis # 3 169 2 169 169 192 54.0 3e-49 MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDVRR HDDLNAFLKTLGPNDEMYLISKFSSKNYAQVDYTDPNKNYYFVFGKETTGLPETFMREYY DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMETTHHYENDKLKDDYDRPERYER NLGENK >gi|227863195|gb|ACKR01000024.1| GENE 36 31517 - 31912 508 131 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00667 NR:ns ## KEGG: LCRIS_00667 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 131 1 131 131 244 100.0 1e-63 MDFEKQTDIIVQAFHYDLVDEDTKPISDVRPGIRKLDVSGDDEHSEENGSYYDVAIQYDV IPAPAMFEASGLIHQIVQLKDYHGDGSDISNSDWQLLTRPLVEQLETLIYETTQLTLGQP VNLNFKAEFDN >gi|227863195|gb|ACKR01000024.1| GENE 37 31925 - 34348 2213 807 aa, chain + ## HITS:1 COG:BS_spoIIIE KEGG:ns NR:ns ## COG: BS_spoIIIE COG1674 # Protein_GI_number: 16078743 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 24 793 17 777 787 597 43.0 1e-170 MPAKKKQRKAKKSYNKRKANKKQNLNWSICGLVLILIAGLAFVRFGILGKQIANLIRMFF GDSYLFAAGLLGLFGLVNLIYNQPIHLTIKRSLGLAIAFLGILLIQCNLYFEHELVNSNF LNSFWHAMAAEFGRAGVTESIGGGLIGSLAYQLFYPLLGQIGVRVFAILLLPIGILMFFD VKFRTIIEKFQTVSQLFIKKNKEAGVKVKDKYNDVLEKRRQKKEEQDEDLVDDDKPIFPN VADFDPADPTDDDVTPTAEDVEVEPETTPDPEPQIQIAPQHDDGVKELPKSHSFAEDDQK LKQELADVDHGELKTDAPVNKAYKMPPLSLLDPIKSTDQSTDRDLIKKNTQVLQSTFKSF GVKVIIKKAILGPTITRYEVQPAVGVKVSRIVNLADDLALALAAKDIRIEAPIPGKPFIG IEVPNRATSVVSFKDVMEHQDNKAKSDPMDVPLGKDVTGSIISANLAKMPHLLIAGSTGS GKSVAINTILASILMKARPEEVKLVLIDPKMVELSVYNGVPHLLIPVVTDAKLAANALRK VVKEMERRYKLFAAGGVRNMSEYNQKVAENNRDKTKPVMKPLPYILVVVDELSDLMMVGG HDVEGAIVRLGQMARAAGIHMILATQRPSVDVITGLIKANVPSRISFAVSSGVDSRTILD QTGAEKLLGRGDMLYMPIGASKPERVQGAYIASDEVERVIEWVKKQQEVSYDETMIPKKG ENSSNADSKDDEPADEFYEQAVDLVRRQQTASVSMLQRRFRIGYNRAARIVDEMEAKGIV GPSEGSKPRQVLVPPIKNEGNSNNAHN >gi|227863195|gb|ACKR01000024.1| GENE 38 34335 - 35549 1039 404 aa, chain + ## HITS:1 COG:BH2393 KEGG:ns NR:ns ## COG: BH2393 COG0612 # Protein_GI_number: 15614956 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Bacillus halodurans # 5 404 15 426 431 83 21.0 7e-16 MLTTNIAIRKNKKFTTAAIGCFLRLPLTKHNLAYASLLARIQMNSSLSYPSLALQQKRLA ELYDLQLEIMPQVFGKEILLTYYANFVEPIEILDPHYTYEEILNVIAQIVNQPNFAEPLV EYAKRQLAEEYQELIEQPSNYALEQFFKLWYQDQPDYAETFIGSLDEIKAATSTTMMHYW RNLANVPMQILGMTRDNNLVSKLAQAMFQQTGLTKSFQTASLTIPAKRKLIEKEDDQGNV QAQLLMGFGLEQSIDYRGQVMGILLSQYLAGDQSSKLFTQIREQLGAAYNVEASCFANNS LFLVSAGLDPSKIAAARKIILSEMGKLVQGEVEDDLFKKAKKAILRNMKIGLDGQNWQMG QMLRDELFSGYLDFDRENAIRRATPKQLVAFAQNLFFNESYVLK >gi|227863195|gb|ACKR01000024.1| GENE 39 35546 - 36790 936 414 aa, chain + ## HITS:1 COG:L31393 KEGG:ns NR:ns ## COG: L31393 COG0612 # Protein_GI_number: 15673954 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Lactococcus lactis # 26 406 15 405 410 143 29.0 5e-34 MMTPKIIKKEYQSGFKAEIILKPHFYQRFFGIIVDFGSSDPQKVAGSAHFLEHKLFAKKD GDLSTQFEDIGADVNAFTSFNETMFYCSGIEHTPKMIDLLFELVGQPYFTKENIAQEAPI IEQELAMYQDDPTWSVNNAIMHDMFGDSNLGIEVVGTKESINQVTVKNLTQVYEAKYVPE KMQFVACGDFSDNQVQTILRQVGKLQQKYLHGKGKSTAEKQVSFRMLHDQVLPARGNSNS FGLGIRFKNFKKVLLSFDLTQILLEIMLESKLSAMGPWFEEMRKKQLLMDSLQISVNYTR QGDFATIFGVSPQAQEVIAEIKRVLTEPIKKNSAEYRFIRQNFILQKKEWLARTARTSND LSYLAIELIEENLDHENLTQNIAKLQAMNFDQFYDYCQKIMKDSELCSAYLENK >gi|227863195|gb|ACKR01000024.1| GENE 40 36804 - 37532 744 242 aa, chain + ## HITS:1 COG:lin1431 KEGG:ns NR:ns ## COG: lin1431 COG1028 # Protein_GI_number: 16800499 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Listeria innocua # 1 242 5 243 243 184 39.0 2e-46 MKRAIVFGATGGIGQDICRDLADAGWSLYLHYHSNSQKAENLVQELFAKHPDQDFMSLQL DFATGDAQLTDFVKNLLPVNAVVFAQGITKYGFLGDEKLANITDLININLTVPIKLTKLL EPQLMKRDFSRIVYLGSVYGGAGSALESVYSATKGGITRFAQAYAREVASNNLTVNVIAP GAVKTKMNAFFSEDTIQEVKDEIPVGRWANGSDISYWVRTLLDRRSSYLTGQTIYVTGGW LL >gi|227863195|gb|ACKR01000024.1| GENE 41 37600 - 38622 894 340 aa, chain + ## HITS:1 COG:lin1432 KEGG:ns NR:ns ## COG: lin1432 COG1426 # Protein_GI_number: 16800500 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 282 1 310 311 94 28.0 3e-19 MADIGDKLKSAREAKGLSIADIEKATKIQSRYLEAIEKNEFDKLPGDFYVRAFIRQYAQV VGLDGKELLSDYHDDVPEAKPDEYVENSIDNKSEEVRETTDNKKNLWKNYLPRIAIGLGV IIVILVVYVLYARLSSGGQKNQADNNDVTVSSQKSSSSSSKKAKKVVVNKVKVTKVSDNE YRVTGLNKNRRLVVRAGENQNISAGVQVNGNANSWQSTLLANQKHTMTLPSNAERVVITL GNDNGTSITIAGKKIPYTANNAYRTITLLIGKAKGTTSQNNSSSNNTGSTNNNTTNSSST QSRTTTQSSATRQSSRQQSSTTQSSADTNNGNDGGNNNNN >gi|227863195|gb|ACKR01000024.1| GENE 42 38640 - 39200 317 186 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 174 484 661 904 126 41 3e-28 MNLPNKLTVFRIFLIPVFMLIIIFGGNASVQAAGSTVVWSRVIAAIVFAVASATDWFDGH IARSRNMVTNFGKFADPLADKMLTMTAFIFLVELKLAPAWVVAIIVCRELAVTGLRLILA ENEGQVLAAKMPGKIKTTCQMLSIIFLLIGDFFHIGTILLYLALIFTIYSGYDYFHQSWG VFKGSM >gi|227863195|gb|ACKR01000024.1| GENE 43 39393 - 40493 1548 366 aa, chain + ## HITS:1 COG:lin1435 KEGG:ns NR:ns ## COG: lin1435 COG0468 # Protein_GI_number: 16800503 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Listeria innocua # 4 330 2 328 348 476 76.0 1e-134 MAKDEKQAALDAALKKIEKNFGKGAVMRMGEKADTQISTVPTGSLALDAAIGVGGYPRGR IIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPN TGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG NISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVLGN RVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQ GRENAKKYLEEHPDIYQDIQKQVRQAYGIDEKSIADREDPEKIKEKREEAKTEKEAATDK KSEQAK >gi|227863195|gb|ACKR01000024.1| GENE 44 40609 - 42246 1913 545 aa, chain + ## HITS:1 COG:lin1436 KEGG:ns NR:ns ## COG: lin1436 COG1418 # Protein_GI_number: 16800504 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Listeria innocua # 5 545 1 520 520 476 55.0 1e-134 MNNMLTIMIPVATAIVSFLVGSVVGYAIRKHSWEQKAQNAQNDADHILADAKAQVAAAQA EVNAQKQAAAAVKQSAENTKKEKILEAQEQIRDFRQKTEDELNSKKDNLAREKNRLQQRE DTLDHKNSLLDERESGLTQKEDQLKQQYASLKAKLTEAEELVETRRQKLYDVAKLDEEEA KKIVLSQLSDELVKERAEMIRNSNEEVKAKADHYANQVIVDAIQSSAADTVAETTVSVVD LPNEEMKGRIIGREGRNIRSFEALTGIDLIIDDTPKVVTLSGFDPIRREIAKRAMERLIK DGRIHPARIEEMVDKARKEVNDDIYEAGESALMELGIHRMNPELVKTLGRLKYRTSYGQN VLSHSIEVGKLAGTMAAELGLDEKLAVRAGLLHDIGKAIDHDIEGSHVEIGVELTRKYHE PDVVVNAIAAHHGDVPKLSFIAELVVAADTISSARPGARSESLENYIRRLTELEKIAKSY QGVKQAYAIQAGREVRVMVEPDEISDDRTVILARDIRNQVEKELDYPGNIKITVIREKRV VAIAK >gi|227863195|gb|ACKR01000024.1| GENE 45 42350 - 43507 1066 385 aa, chain + ## HITS:1 COG:L35751 KEGG:ns NR:ns ## COG: L35751 COG0472 # Protein_GI_number: 15673776 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Lactococcus lactis # 2 360 12 395 443 333 46.0 3e-91 MFKIIVELFLLVIISAAITPFIRRLAFVLGAVDNPNARRVNKKPMPTIGGLGIFVTFNIG TFVLLREQFPTHEIFSILLASSVIVLTGLIDDILELKPRQKMFGIFIASLIIYFLAGIRM NVLKVPFIAHEVNLGWWSFPITIFWILALTNAVNLIDGLDGLADGVSMISLTTMGIVGYF FLHTHQLYVPIACFMLAACLLGFLPYNFHPAKIFLGDTGALYIGFMIAVLSLKGLKNVTF ISLLVPIIILGVPITDTVYAMIRRKLNKKPISEADKHHLHHQLMRMGLTHRQTVLTIYAL SLVFSFISLLFLLSPTWGTWLLILGLLIALEYFVESIGLLGEKYHPLMHVIQKIINQKSK TDPTIEVWHLGDEKPDQLKSKKNNK >gi|227863195|gb|ACKR01000024.1| GENE 46 43542 - 44204 626 220 aa, chain - ## HITS:1 COG:lin2660 KEGG:ns NR:ns ## COG: lin2660 COG1739 # Protein_GI_number: 16801721 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 5 209 3 207 211 167 43.0 1e-41 MSEKENFLTIKENGTGELIIKKSRFIANIARTTTTDAANDFIQKISKKYRDASHNTFAYT IGLNDDQVKESDNGEPSGTAGVPELKALQLMNLKNVTVVVTRYFGGIKLGAGGLIRAYSN SVTNVVEKVGVIKRVLQQELIFSVPYNRFDEVDHYLKQQKIFIANTEYGVDVKIHIFVND DQQAKPKEDLTNLLAGQVTFTNGEKRYNEIPVEANNYHEQ >gi|227863195|gb|ACKR01000024.1| GENE 47 44250 - 45530 944 426 aa, chain + ## HITS:1 COG:SP2208 KEGG:ns NR:ns ## COG: SP2208 COG4098 # Protein_GI_number: 15902015 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Streptococcus pneumoniae TIGR4 # 27 426 27 428 432 306 42.0 5e-83 MEDLTLLSGRQWIVSQEDSSTFEGCRKIPVIEKGKCNRCGSQVNSRLPNGKYYCRGCIGL GRANEGDWLIRKDSNNTFSHVKNGGLSWQGKLTPLQQNISDKLVQNFEQRKNTLVHAVTG AGKTEMLFQLIARCMKKGQRACIATPRIDVVNELFPRFSAAFAQVEIGKYHGREFKEIGL EQLTICTTHQLMKFYRAFDLLVIDEVDSFPYVGNPQLHFAAKNAVKTTGTRMYLTATPTN DLLLEAKTGKLEILRLNRRFHGGLLPVPRERLFIRPFLRKGQIHPKLMQEIKKVIQSGHP LLLFVPRIEEIPLYQEALRKKLQNKIKLAGVHAQDPQRLEKVQAFRDRKYDLLLTTTILE RGVTFKNVWVIIIAADDAIYTAASLVQIAGRVGRAHDDQTGLVLYCYHRYTKNIRQSIKQ IKGMNR >gi|227863195|gb|ACKR01000024.1| GENE 48 45527 - 46222 515 231 aa, chain + ## HITS:1 COG:L0319 KEGG:ns NR:ns ## COG: L0319 COG1040 # Protein_GI_number: 15673071 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Lactococcus lactis # 1 230 1 215 216 109 33.0 3e-24 MRTCLLCEQEFTPPVQFAQLFSFKTARKSKICLQCLKQFEKLADNRCSGCDKELGQGFMC SDCRNWQAIYGENILHNHALYRYNSAFHDLMVAYKRRGDYVLREVLQDLCYDYLCKTNYD FYVPVPTSPEHQSRRQFDTIFAIYADILPLTPLLIKQSGSHAQGEKNKEERLKTPQSFLI DKNIKIKENIVSGKVLILDDIYTTGRTLYHARDRLQQGFPEMKIESFSICH >gi|227863195|gb|ACKR01000024.1| GENE 49 46303 - 46848 811 181 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116513711|ref|YP_812617.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] # 1 181 1 185 185 317 85 1e-85 MLKYNVRGENIEVTDALRSYVEKRLNKLEKYFELNQDVIAHVNLRVYRDHSAKVEVTIPL PYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSREKGLQDFFVEQPEEEEKKP SEFDIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFEDAETNGTSVVYRRNDGRYGLIETN E >gi|227863195|gb|ACKR01000024.1| GENE 50 46990 - 49389 3056 799 aa, chain + ## HITS:1 COG:SPy1805 KEGG:ns NR:ns ## COG: SPy1805 COG0653 # Protein_GI_number: 15675639 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Streptococcus pyogenes M1 GAS # 1 795 1 783 839 1013 65.0 0 MVNILKKLYNDDKRELKKFEKIAAKVEAHADEMSKLSDEQLQAKTPEFRDRLKKGESLDD LLPEAFAVAREGAKRVLGLYPFHVQILGGIALHYGNIAEMMTGEGKTLTATMPVYLNALE GKGVHVVTVNEYLSSRDEEEMGQLYKWLGLTVGLNLNSMSPDEKRAAYNCDVTYSTNSEL GFDYLRDNMVVYKEQMVQRPLNYAIIDEVDSILIDEARTPLIISGEAEQANSDYIRADRF VKTLTEDKSDDDADDDEDHGDYKIDWPTKTISLTRTGIEKACQHFGLKNLYDVENQKLVH HIDQALRANYIMLKDIDYVVQDGEVLIVDSFTGRVMEGRRYSDGLHQAIEAKEGVKIQEE SRTQATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMQVITIPTNRPIARKDMPDILY PTLDSKFHAVVEEIKKRHANGQPVLVGTVAIESSERLSKMLDKAGIPHAVLNAKNHAKEA QIIMNAGQRGAVTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGR QGDPGYTRFYLSLEDDLMKRFGGDRVKDFLDRLSDNDDDKVIESRLITRQVESAQKRVEG NNYDTRKQTLQYDDVMRIQREIIYGERMQVIEADKSLKNVLIPMIHRTIDHQVAMFTQGE RKEWRLDSLRDFISSSLTSDKVTDSIDFKTISVEDLKKKLYDIVEQNFEDKEKALGDPSQ MLEFEKVVILRVVDDRWTDHIDAMDQLRQSIGLRGYGQLNPLVEYQDSGYRMFEEMISNI EFDVTRLFMKAEIRQNLSR >gi|227863195|gb|ACKR01000024.1| GENE 51 49572 - 50570 870 332 aa, chain + ## HITS:1 COG:BS_prfB KEGG:ns NR:ns ## COG: BS_prfB COG1186 # Protein_GI_number: 16080582 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Bacillus subtilis # 1 327 40 366 366 375 58.0 1e-104 MAQPDFWNNQEKAQKLISETNRLKEKRDSFLKLQTSYEDETTAVELLREEPDPDLQKEVE ADLATLQEDFHNYELDLLLSGKYDSHNALMEIHPGAGGTEAMDWGQMLLRMYQRYCDTAG FKFEINDYEPGEEAGLKSVSARIVGKNAYGMLKSENGVHRLVRISPFDAAKRRHTSFASV EVIPEVDDSIQIDIDPKDLRVDVYRSSGAGGQHINKTSSAVRITHLPTGIVTTSQAQRSQ LQNRETAMNELRAKLFHLEEEKKRKQKQALKGDQKEIGWGSQIRSYVFHPYNLVKDLRTG HETADAQGVMDGKLQPFIYSYLQWLLSQENPD >gi|227863195|gb|ACKR01000024.1| GENE 52 50579 - 50851 271 90 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00684 NR:ns ## KEGG: LCRIS_00684 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 90 1 90 90 153 98.0 2e-36 MSLMEIVTLVLVALIILSLLFVLFKAFILLLPVAVIAILIIWLIYRFTGRKNQDNMPSSG SYREWFKATSTSGPRPRKKARNVTTKDIDK >gi|227863195|gb|ACKR01000024.1| GENE 53 50866 - 51834 936 322 aa, chain + ## HITS:1 COG:lin2626 KEGG:ns NR:ns ## COG: lin2626 COG1493 # Protein_GI_number: 16801688 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Listeria innocua # 29 311 26 308 312 321 53.0 1e-87 MADEVRLSKLIQDNQSILEVYQGQEYIKDEEIYVSDIYRPGLELTGYFDFYPAQRIQLLG RTEISYAARLDHDIRMHVFNKMCTKATPCFLISRSLPVPEELTTAAEEHKIPILRTREST TYISSILTEYLRARLAKRTSIHGVLVEIKGMGVLLTGASGVGKSETALGLVQRGHRLIAD DRVDAFQKDHNTVVGEAPKILKHLMEIRGIGIIDVMNLFGAGAVKNRTEIQLVINLVNWD PKANYDRLGFQENTREICNVPIPQVNIPVKVGRNIEIIIEVAAMNFRAKKMGYDATQTFD NNLTSLISEHSKEDTNKVPHND >gi|227863195|gb|ACKR01000024.1| GENE 54 51827 - 52666 690 279 aa, chain + ## HITS:1 COG:lin2625 KEGG:ns NR:ns ## COG: lin2625 COG0682 # Protein_GI_number: 16801687 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Listeria innocua # 6 268 8 267 277 255 51.0 7e-68 MTNLVINPVAFHLGNLSVKWYGIIMAVAIMLACWMAINEGKKRQIIPDDFVDLLLWAVPL GYVGARIYYVIFEWGYYSQHPEQIIAIWNGGIAIYGGLIAGLIVLLIFCYKRMLPPFLML DIIAPGVMAAQIWGRWGNFVNQEAHGAPTTLHFLQSLHLPQFIIEQMKIGGTYYQPTFLY ESFFNLIGLILILSLRHKKHLFKQGEVFMTYLLWYSVVRFFVEGMRTDSLYIFGIIRVSQ ALSLILFIATIILWIYRRKVVNPKWYLDGSGLKYPYSRD >gi|227863195|gb|ACKR01000024.1| GENE 55 52707 - 53726 1458 339 aa, chain + ## HITS:1 COG:SPy0226 KEGG:ns NR:ns ## COG: SPy0226 COG0240 # Protein_GI_number: 15674414 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 3 336 5 334 338 333 52.0 4e-91 MTKIAVLGNGSWGSVLGSMLADNGNDVTLYGNIDSVNEEINAHHTNSHYMKDWKLNENTK ATGDLEAALDGAELVLFVLPTKAVRIVAKNVRKVLDKTGAKPLLVTATKGIEPGSKKLIS EILTEEIYPDDEDKIVAISGPSHAENVAQKDLTAIACASTNEENAKRVQELFSNDYVRFY TNDDLVGVEVGGAVKNVIAIAAGILVGQGYGDDAKAALMTRGLAEITRLGVQYFGAKPMT FSGLSGIGDLIVTCTSVNSRNWRAGKQIGEGKTLDYVLKNMGQVVEGATTVKAVHELCEE KGIDMPISEAIYRVLYEDADVDTEIKKMMGREPKPEIRL >gi|227863195|gb|ACKR01000024.1| GENE 56 53808 - 54746 584 312 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 5 307 2 306 306 229 41 3e-59 MADKYDVIIIGAGPGGMTAGLYAARANLKILVLDRGPYGGQMNNTDAIDNYPGFSEIKGP ELSQKMYDTMMKFEPDYKYGNVQSVELDGEDKLVKTDDGNEYRAPIVIIATGSDHKHLNV PGEEEYSGKGVSYCAVCDAAFFKDEDVAVIGGGDSAIEEGIYLSQLAKSVTVIHRRDQLR AQPTLQKRAFANKKMHFIWNAQTEEILGDDMKVTGVKYRDKETGAEKEIPVAGVFIYVGV LPQTEPFKDLGILDDHGWIVTDDHMETKVPGIFALGDVRQKDLRQIANAVGEGSVAGQAA YNYYQDLQDKKN >gi|227863195|gb|ACKR01000024.1| GENE 57 54913 - 56637 2177 574 aa, chain + ## HITS:1 COG:SP1498 KEGG:ns NR:ns ## COG: SP1498 COG1109 # Protein_GI_number: 15901345 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pneumoniae TIGR4 # 1 550 1 548 572 517 48.0 1e-146 MDAKEIYTEWQKATNLPDYLKDQLNTLGKDEKWIEDAFGQDINFGTAGMRGRLEPGTNRI NLFTVGRVTEGLARLIEENGADAKKRGVAISFDSRYHSREFAEHAARVLGAHGIHVYLFD DLRPTPELSYAVRHLHTFAGINITASHNAKQYNGYKVYGEDGAQMAPDNADRLFAYAQKV TDIFAVKAAPVKELRANGTLQLIGEDVDEDYLNELKQVTVDPEMVKANADKLKIIYTPLH GTGKMLYDRAFRQGGFDNVIPVPSQSIIDPEFPTTIKPNPEYRDVFEPGFKLANEVNANV IIATDPDADRMGAAVRKTDGDFQVLTGNQIATLMAYYLLAHMKENGQLTPDYEIVTSVVS SALPFKIAEDFGIKTKHVLTGFKYIGEEVDRMNKAGDAKFLMGFEESYGYLFKPFARDKD AMQGALMFAEVASYYASRGMTVFDGLQEIWQKYGVAYEITRAIEMPGIGGQKKMAELMSK LRNEHLTEIGGSKVLKIQDFLQKETIENGKKTPLEGFPESNVLKYFLDDETWVALRPSGT EPVIKAYVGVNKKDIATAEKAAEDYQKALADLLK >gi|227863195|gb|ACKR01000024.1| GENE 58 56740 - 58770 1885 676 aa, chain + ## HITS:1 COG:SP1238 KEGG:ns NR:ns ## COG: SP1238 COG0556 # Protein_GI_number: 15901100 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Streptococcus pneumoniae TIGR4 # 1 664 1 659 662 897 67.0 0 MIKRQKNRKFELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIAK LNKPTLVITHNKTLVGQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAI NDEIDQLRHATTSALMERNDVVVVASVSCIYGLGDPKEYARSVLMIHEGEEYDRNTLLRD LVNIQYDRNDIDFQRGRFRVRGDVVEVFPAGNSNHAYRIEFFGDEIDRIVEVDSLTGEVI GERESISLFPATHFMTNDEQLRRALGAISKEMKLQVKKFEGEGKLLEAERIKQRTTYDME MMGEVGYTNGIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDR NRKQTLIDYGFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERTDHKVEQIIRPT GLLDPKIEVRPIEGQIDDLVGEINKRIDRHERVFVTTLTKKMAEDLTDYLKDLGIKVRYL HSDIKTLERMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLV QTMGRTARNANGEVIMYADTITDSMRAAIKATKRRRKIQMEFNKEHGITPKTIIKPIQDV ISITKPSSEKEEKSDSFADLNFDELTAKQKKTMISNLQEQMQEAAKKLDFEEAANLRDAI MELQKSSRKGKNFNGK >gi|227863195|gb|ACKR01000024.1| GENE 59 58760 - 61600 2780 946 aa, chain + ## HITS:1 COG:SPy1825 KEGG:ns NR:ns ## COG: SPy1825 COG0178 # Protein_GI_number: 15675653 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Streptococcus pyogenes M1 GAS # 4 936 3 942 942 1323 70.0 0 MANDKIVIRGAREHNLKDINLTIPKDKLVVITGLSGSGKSSLAFDTLYAEGRRRYVQSLS SYARQFLGQMDKPDVDSIDGLNPAISIDQKTTSHNPRSTVGTVTEINDYLRLLWARVGHP ICPNDGTLIQRQSVDQMVDRVMALPERTKIQILAPVIRAKRGEHKEVFKRVQRAGYVRVI VDGEMHEIGEDFELAKNKRHSIDIVVDRLIVKDSIKSRLFDSIEAALRLSDGYMNVDVIG GEMLNFSEYYACPKCGFTVGEMEPRLFSFNAPFGACLDCDGLGMKLAVDEDLVVPDKTKS LAEGALAPWKTSNYYTEMLEQACTALKIPMDKPFNKLTKRQRDIILHGSTKPVKFHVTGD FGVNDTVQPFEGVMANVERRYKRPMSKFMRDVMGKYMTELTCSTCHGKRLNEKALAVKVM GKDIAEASELSIDKALDFFKDVKLSEQETMIAKPILKEVRDRLSFLDSVGLDYLTLSRSA NTLSGGEAQRIRLATQIGSNLSGVMYVLDEPSIGLHQRDNDRLIASLKRMRDLGNSLIVV EHDDETMRQADYLVDMGPGAGVYGGKVMAQGTPKEVEQNPDSLTGQYLSGKKFVPVPLKR RKGNGKKITITGAQENNLKNINVDFPLGKFIVVSGVSGSGKSTLVNMILKRALAQKLNNN STKPGKYKSIKGYKNIEKIIDIDQSPIGRTPRSNPATYTSVFDDIRTLFAQTNEAKLRGY TKARFSFNVKGGRCEACHGDGIIKIEMNFLPDVYVPCEVCHGTRYNSETLEVTYRGKNIA QVLDMTINEATKFFENIPKIQRKLQTIVDVGLGYVKLGQSATTLSGGEAQRMKLAAELQK LSTGKNFYILDEPTTGLHTDDIKRLLEVLQRLVDEGNTVLIIEHNLDVIKNADWLIDLGP EGGERGGQIVATGTPEEVAKVKESYTGQYLKPVLERDTKLTKEAKK >gi|227863195|gb|ACKR01000024.1| GENE 60 61673 - 62215 582 180 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00692 NR:ns ## KEGG: LCRIS_00692 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 180 1 180 180 236 99.0 3e-61 MDIFSSSRDNHGFDWGAFIAGILMVVVAFVLLRHPAKGLHAFVLIFAIVSIVQGIVWLAA YSRFREFFSRSWVAIVSGVLDIIIGILFICSYDIGGLTIAYLFAIWFFVDSVVGIAWSWH LRAFSTGYFVFNLILNILSLIIAFFLIINPVIAALSLVWLVAFWLLVFGINEIVVAFMHR >gi|227863195|gb|ACKR01000024.1| GENE 61 62309 - 63190 930 293 aa, chain + ## HITS:1 COG:SPy0652 KEGG:ns NR:ns ## COG: SPy0652 COG1660 # Protein_GI_number: 15674720 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Streptococcus pyogenes M1 GAS # 1 289 1 288 296 308 52.0 1e-83 MADEKKQLLIVTGMSGAGKTVVAHDLEDMGYFVVDNLPPTLLGSFWDLINNSNDFHKVAV VIDLRVKTFYRDLLDEVNSLEDNGNVQATILFLDASDDVLVARYKETRRLPPLANNGKGR LLDGIQEERRILMPIKNRSNYIIDTSNLSTKELKQKLINTFSDRKRQPFSIEVMSFGFKY GMPIDADIVMDVRFLPNPFYISELRPFTGLDKRVFDYVMNKEETQVFYKKLLDLLETAIP GYIKEGKEKLTIAIGCTGGQHRSVSIAQQLARDLAKKYPVDITHREVSRYIRK >gi|227863195|gb|ACKR01000024.1| GENE 62 63201 - 64244 752 347 aa, chain + ## HITS:1 COG:L189428 KEGG:ns NR:ns ## COG: L189428 COG0391 # Protein_GI_number: 15672944 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 17 333 4 320 327 334 50.0 2e-91 MPYGETRIVRVIKGRRPRVVVIGGGTGLPVILNALKDQNAEITAIVTVSDDGGSSGSIRN FINVVPPGDIRNVLVSLSDLPQEEKNIFQYRFDSSDSFFSGHAIGNLIIAALNEMHGNIF DAVQSLSKMMKIDGHVFPASNEPLTLNAEFVDGTTESGETEITSKDKRIKRVWVTDTDSD EEPRAVLPVLASIMQADAVVLGPGSLFTSILPNLMISNLGEAVRETDAEVIYICNIMTQR GETDHFSDAEHVQVINDHLGGNYINTALVNGAKIDMSKFHPEDYDAYLEPVKNDFEGLRK QNCRVITDDFIDQRHGLVFHDGEKVGKEIINLAFESMSRKRMKENDG >gi|227863195|gb|ACKR01000024.1| GENE 63 64237 - 65172 675 311 aa, chain + ## HITS:1 COG:lin2615 KEGG:ns NR:ns ## COG: lin2615 COG1481 # Protein_GI_number: 16801677 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 3 310 2 308 323 315 53.0 6e-86 MASYASEVKKELTSLEVHPEHAKAELAAFLRMNGVLNLHDHQFSLDITTENPAIARRIFK LIKIAYGIEPLLIVSRKMKLKKNNQYLVRLNQKVQEILENLQIWDPEKGLVTRIPQRIMT SREGAMSYLRGAFLAGGSVNNPETSRYHLEIYSTYEDHNEDLCKLMNNYFYLNAKATKRR RGYIVYLKEAAKIGDFLHIVGALNAMLNFEDLRIMRDMRNSVNRLVNCDTANMKKTASAS AKQVEDIQLIEQENGLDDLPEKLQVLARFRLAHPELTLKEVANQIPDGPISKSGVNHRFK KLHELAESLRE >gi|227863195|gb|ACKR01000024.1| GENE 64 65237 - 65821 813 194 aa, chain - ## HITS:1 COG:SA0723 KEGG:ns NR:ns ## COG: SA0723 COG0740 # Protein_GI_number: 15926445 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Staphylococcus aureus N315 # 2 194 3 195 195 270 73.0 9e-73 MLVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDIS LYINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVL IHQPLGGAQGQQTDIQIAANEILKSRKKINEILHETTGQPLEKIQKDTERDNYLTAEEAK EYGLIDEIMVNKKK >gi|227863195|gb|ACKR01000024.1| GENE 65 66016 - 67644 1652 542 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00697 NR:ns ## KEGG: LCRIS_00697 # Name: not_defined # Def: conserved protein with bacterial Ig-like domain # Organism: L.crispatus # Pathway: not_defined # 1 542 1 542 542 978 100.0 0 MKYSNKILTATSAVALGVGLLIGSTNAVFADNSKTTDSNTDTAKTDSSAKKGPAQTSTSY DLMVKVGSNKNYPVYKKISNGKPSGKIADASDYQYAHIQSDQRIKTKDATYWRIYVNGRK VGYVNQNYFTRDAIAVPKTISLVQNSHYDFDPTDAVSYVTNYMGTVIDTADIKISEDAID CSTPGTYNVKYSYGKAKATVKVTVRKSTKEGIADADSVQAKPFNGDLKSWKTYYGSSANY VTKTDFTPDKNKHAYDSESGKLDFTTRFFQPVLLSVYRDIKNDDYINRVGHIPEGITMSN GWLYTSLLSSTLISNGHIVGYNLNHLTNAFNGQYLLDMSQKKFNSYVKNIKVSPYIPIGH GQAMGSTDKYIYVLNNNNKVSYKSNMSEELIQIRKSDMCINKIWTIKCWNGSDSDGRYFN NGVVVNDHKLYTTLYNKEKDQTEYWEFNRKGDNWYPTMVGATKGGIVANTYTQGFTYDAK NNNFYLAFNDVIAKIATDGEVKDTYQYHTGREIEGIATYNNKLYMNLAQRAELLESKQKL TK >gi|227863195|gb|ACKR01000024.1| GENE 66 67753 - 68391 199 212 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 19 212 38 242 329 81 27 1e-14 MKILELKHIQYSADKKQILQDVSFKVNKGDFLTLIGPSGAGKSTILRLIANLISANSGDI LYQEKNISSLNPVQYRREVSYCFQQPSLFGQTVRDNLIFPYEIRKVDVNDKQIADLLNQV DLSADFLDKKITALSGGEKQRVALIRNIIFLPKILLLDEVTTGLDNQSKDIVHNLIKDVS EKGVTIIQVTHDQSEIDEASNILRVKKGGIIE >gi|227863195|gb|ACKR01000024.1| GENE 67 68388 - 69146 442 252 aa, chain + ## HITS:1 COG:ECs0554 KEGG:ns NR:ns ## COG: ECs0554 COG0390 # Protein_GI_number: 15829808 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Escherichia coli O157:H7 # 6 251 15 260 268 247 57.0 2e-65 MKNVVVSNWSLVLAFALVLVSIGISAKEKLGLTKDILISVIRAIIQLVVIGYVLKFIFHV NALWLTLVSTIVIIFNASWNANQRDPNPGRNIWNSIIAEAVGTYVTLGILIFSGVIKPVP MQVIPITGMIAGNEMVAVGLCYKALNDSFNDLHQQVLEKLALGSDIKTASMPILRRSIKT AMQPTIDSAKTVGLVNLPGMMSGLIFAGVNPIYAIKYQIMITFMLLSATGLGAVISGYLA YKNYFNDRMQLK >gi|227863195|gb|ACKR01000024.1| GENE 68 69393 - 69551 93 52 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00700 NR:ns ## KEGG: LCRIS_00700 # Name: not_defined # Def: uncharacterized conserved secreted or membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 52 135 186 186 100 100.0 2e-20 MFGVFGHDKELKHREYIFSIPSNWKVMSVNDAKQLQKQMMKKQQFLKQKSAQ Prediction of potential genes in microbial genomes Time: Wed May 25 06:10:01 2011 Seq name: gi|227863065|gb|ACKR01000025.1| Lactobacillus crispatus JV-V01 contig00026, whole genome shotgun sequence Length of sequence - 122256 bp Number of predicted genes - 129, with homology - 128 Number of transcription units - 46, operones - 28 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 308 201 ## LCRIS_00700 uncharacterized conserved secreted or membrane protein 2 1 Op 2 . - CDS 309 - 1781 1509 ## COG0477 Permeases of the major facilitator superfamily - Prom 1812 - 1871 9.7 + Prom 1862 - 1921 9.3 3 2 Op 1 . + CDS 1942 - 2379 415 ## LCRIS_00702 transcriptional regulator, MerR family + Term 2411 - 2455 -0.9 4 2 Op 2 . + CDS 2463 - 3248 711 ## LCRIS_00703 putative protein without homology + Term 3259 - 3310 11.3 - Term 3246 - 3297 9.2 5 3 Tu 1 . - CDS 3315 - 4748 1699 ## COG0531 Amino acid transporters - Prom 4783 - 4842 8.3 + Prom 4829 - 4888 9.6 6 4 Tu 1 . + CDS 4917 - 6449 1802 ## LCRIS_00705 conserved protein with bacterial Ig-like domain + Term 6467 - 6496 1.4 - TRNA 6545 - 6616 40.8 # Arg CCG 0 0 + Prom 6644 - 6703 8.2 7 5 Op 1 5/0.000 + CDS 6864 - 7895 961 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain 8 5 Op 2 26/0.000 + CDS 7948 - 8964 1367 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase + Term 9012 - 9050 7.1 + Prom 8974 - 9033 2.8 9 6 Op 1 13/0.000 + CDS 9079 - 10290 1734 ## COG0126 3-phosphoglycerate kinase 10 6 Op 2 . + CDS 10315 - 11073 990 ## COG0149 Triosephosphate isomerase + Term 11114 - 11149 3.5 + Prom 11221 - 11280 9.4 11 7 Tu 1 . + CDS 11358 - 12407 398 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase + Term 12601 - 12644 5.4 - Term 12714 - 12751 1.9 12 8 Op 1 . - CDS 12781 - 13275 356 ## LCRIS_00710 hypothetical protein 13 8 Op 2 . - CDS 13295 - 14170 921 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 14192 - 14251 5.2 + Prom 14139 - 14198 6.8 14 9 Op 1 . + CDS 14238 - 14936 478 ## COG0692 Uracil DNA glycosylase 15 9 Op 2 . + CDS 14947 - 15936 1138 ## COG0280 Phosphotransacetylase 16 9 Op 3 . + CDS 15936 - 16415 431 ## COG0802 Predicted ATPase or kinase + Term 16417 - 16467 9.3 - Term 16412 - 16448 3.4 17 10 Tu 1 . - CDS 16453 - 16986 607 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases - Prom 17109 - 17168 5.5 + Prom 17000 - 17059 7.2 18 11 Op 1 3/0.000 + CDS 17082 - 17978 928 ## COG0812 UDP-N-acetylmuramate dehydrogenase + Term 17998 - 18033 -0.5 19 11 Op 2 30/0.000 + CDS 18045 - 19142 1001 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 20 11 Op 3 36/0.000 + CDS 19156 - 19944 599 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 21 11 Op 4 25/0.000 + CDS 19941 - 20756 593 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 22 11 Op 5 . + CDS 20753 - 21826 1135 ## COG0687 Spermidine/putrescine-binding periplasmic protein 23 11 Op 6 7/0.000 + CDS 21865 - 22707 1007 ## COG1624 Uncharacterized conserved protein 24 11 Op 7 6/0.000 + CDS 22704 - 23663 872 ## COG4856 Uncharacterized protein conserved in bacteria 25 11 Op 8 . + CDS 23686 - 25038 1728 ## COG1109 Phosphomannomutase + Term 25059 - 25111 6.8 + Prom 25048 - 25107 8.7 26 12 Op 1 . + CDS 25139 - 25954 789 ## COG0561 Predicted hydrolases of the HAD superfamily 27 12 Op 2 . + CDS 25985 - 26425 326 ## COG3682 Predicted transcriptional regulator 28 12 Op 3 . + CDS 26440 - 27156 590 ## LCRIS_00726 hypothetical protein 29 12 Op 4 . + CDS 27156 - 27611 610 ## COG0394 Protein-tyrosine-phosphatase + Term 27614 - 27650 5.1 30 13 Tu 1 . - CDS 27636 - 28781 1462 ## COG1929 Glycerate kinase - Prom 28981 - 29040 5.1 + Prom 28764 - 28823 9.1 31 14 Op 1 7/0.000 + CDS 28991 - 29824 665 ## COG3711 Transcriptional antiterminator + Prom 29871 - 29930 3.4 32 14 Op 2 8/0.000 + CDS 29952 - 31973 2347 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 33 14 Op 3 . + CDS 32015 - 33490 1958 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 33503 - 33553 12.5 + Prom 33559 - 33618 6.3 34 15 Tu 1 . + CDS 33692 - 34612 759 ## COG1073 Hydrolases of the alpha/beta superfamily + Term 34619 - 34648 0.5 - Term 34607 - 34636 -0.3 35 16 Tu 1 . - CDS 34657 - 36255 1721 ## COG0531 Amino acid transporters - Prom 36393 - 36452 7.2 + Prom 36439 - 36498 9.3 36 17 Op 1 . + CDS 36658 - 36843 334 ## PROTEIN SUPPORTED gi|227877245|ref|ZP_03995318.1| ribosomal protein S14 37 17 Op 2 . + CDS 36872 - 37516 828 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases 38 17 Op 3 . + CDS 37588 - 38109 500 ## LCRIS_00736 integral membrane protein + Prom 38114 - 38173 3.1 39 17 Op 4 . + CDS 38194 - 38922 1059 ## COG0217 Uncharacterized conserved protein + Term 38935 - 38977 10.5 + Prom 39006 - 39065 9.8 40 18 Op 1 24/0.000 + CDS 39122 - 40096 788 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 41 18 Op 2 . + CDS 40065 - 41066 745 ## COG1459 Type II secretory pathway, component PulF 42 18 Op 3 . + CDS 41127 - 41468 477 ## LCRIS_00740 competence protein 43 18 Op 4 . + CDS 41443 - 41868 86 ## LCRIS_00741 prepilin-type cleavage/methylation protein 44 18 Op 5 . + CDS 41865 - 42134 325 ## LCRIS_00742 hypothetical protein 45 18 Op 6 . + CDS 42088 - 42615 448 ## LCRIS_00743 hypothetical protein 46 18 Op 7 . + CDS 42587 - 42751 108 ## LCRIS_00744 putative protein without homology 47 18 Op 8 7/0.000 + CDS 42810 - 43811 1005 ## COG0827 Adenine-specific DNA methylase 48 18 Op 9 . + CDS 43856 - 45040 1527 ## COG0282 Acetate kinase + Term 45205 - 45246 1.5 + Prom 45492 - 45551 5.8 49 19 Op 1 . + CDS 45644 - 46531 817 ## LBA0742 hypothetical protein 50 19 Op 2 . + CDS 46540 - 47703 1026 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities + Prom 47708 - 47767 5.4 51 20 Op 1 . + CDS 47796 - 48758 1070 ## COG1482 Phosphomannose isomerase 52 20 Op 2 . + CDS 48794 - 49183 208 ## LCRIS_00750 integral membrane protein 53 20 Op 3 40/0.000 + CDS 49204 - 49908 855 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 54 20 Op 4 . + CDS 49929 - 51362 1193 ## COG0642 Signal transduction histidine kinase + Term 51367 - 51412 9.2 - Term 51355 - 51400 2.0 55 21 Tu 1 . - CDS 51404 - 53584 1944 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 53795 - 53854 9.4 + Prom 53643 - 53702 8.9 56 22 Op 1 . + CDS 53727 - 54329 186 ## COG4767 Glycopeptide antibiotics resistance protein + Prom 54338 - 54397 2.2 57 22 Op 2 . + CDS 54417 - 55754 1838 ## COG0166 Glucose-6-phosphate isomerase + Term 55818 - 55863 9.1 + Prom 55794 - 55853 2.1 58 23 Tu 1 . + CDS 55876 - 57249 1391 ## COG0477 Permeases of the major facilitator superfamily + Term 57449 - 57484 0.2 - Term 57294 - 57357 4.3 59 24 Tu 1 . - CDS 57358 - 58368 922 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Prom 58543 - 58602 78.7 + TRNA 58450 - 58521 56.4 # Glu CTC 0 0 + TRNA 58527 - 58599 59.0 # Gln CTG 0 0 - Term 58636 - 58672 5.8 60 25 Tu 1 . - CDS 58676 - 60034 1386 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Prom 60114 - 60173 8.0 + Prom 60073 - 60132 4.9 61 26 Op 1 3/0.000 + CDS 60164 - 60763 610 ## COG1435 Thymidine kinase 62 26 Op 2 32/0.000 + CDS 60780 - 61868 1578 ## COG0216 Protein chain release factor A 63 26 Op 3 10/0.000 + CDS 61861 - 62706 312 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase 64 26 Op 4 . + CDS 62709 - 63713 1183 ## COG0009 Putative translation factor (SUA5) + Term 63723 - 63761 7.1 + Prom 63715 - 63774 5.8 65 27 Tu 1 . + CDS 63798 - 64427 909 ## COG0035 Uracil phosphoribosyltransferase + Term 64465 - 64513 5.2 + Prom 64447 - 64506 3.7 66 28 Op 1 40/0.000 + CDS 64550 - 65263 648 ## COG0356 F0F1-type ATP synthase, subunit a 67 28 Op 2 37/0.000 + CDS 65284 - 65508 424 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 68 28 Op 3 38/0.000 + CDS 65565 - 66071 607 ## COG0711 F0F1-type ATP synthase, subunit b 69 28 Op 4 41/0.000 + CDS 66071 - 66619 652 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 70 28 Op 5 42/0.000 + CDS 66634 - 68145 1561 ## COG0056 F0F1-type ATP synthase, alpha subunit 71 28 Op 6 42/0.000 + CDS 68156 - 69118 1108 ## COG0224 F0F1-type ATP synthase, gamma subunit 72 28 Op 7 42/0.000 + CDS 69141 - 70580 1814 ## COG0055 F0F1-type ATP synthase, beta subunit 73 28 Op 8 . + CDS 70592 - 71032 611 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) + Term 71042 - 71085 2.2 74 29 Op 1 . + CDS 71099 - 71329 279 ## LCRIS_00773 membrane protein + Prom 71332 - 71391 5.0 75 29 Op 2 . + CDS 71413 - 72402 1132 ## COG1077 Actin-like ATPase involved in cell morphogenesis 76 30 Op 1 . + CDS 72515 - 72709 146 ## COG0759 Uncharacterized conserved protein 77 30 Op 2 . + CDS 72718 - 72945 336 ## LCRIS_00776 hypothetical protein 78 30 Op 3 . + CDS 72967 - 74160 1127 ## COG0772 Bacterial cell division membrane protein + Term 74179 - 74221 7.1 - Term 74166 - 74209 9.2 79 31 Op 1 . - CDS 74241 - 74705 719 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 80 31 Op 2 . - CDS 74766 - 75047 283 ## LCRIS_00779 hypothetical protein - Prom 75094 - 75153 3.6 - Term 75103 - 75155 -0.6 81 32 Op 1 . - CDS 75358 - 76665 1272 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase 82 32 Op 2 . - CDS 76666 - 77133 530 ## LCRIS_00781 YueI protein - Prom 77154 - 77213 7.1 - Term 77163 - 77204 7.4 83 33 Tu 1 . - CDS 77225 - 77932 1157 ## PROTEIN SUPPORTED gi|227903670|ref|ZP_04021475.1| 30S ribosomal protein S4 - Prom 78103 - 78162 7.2 + Prom 78041 - 78100 6.8 84 34 Op 1 3/0.000 + CDS 78121 - 79833 1797 ## COG4477 Negative regulator of septation ring formation + Term 79878 - 79907 1.4 + Prom 79853 - 79912 3.4 85 34 Op 2 7/0.000 + CDS 80029 - 81081 1054 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 86 34 Op 3 . + CDS 81081 - 82298 1385 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase + Term 82360 - 82407 -0.7 + Prom 82440 - 82499 8.1 87 35 Tu 1 . + CDS 82525 - 83781 895 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen + Term 83800 - 83846 8.4 + Prom 83824 - 83883 5.8 88 36 Tu 1 . + CDS 83915 - 84619 548 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Prom 84636 - 84695 4.8 89 37 Op 1 . + CDS 84720 - 85025 201 ## LCRIS_00802 hypothetical protein 90 37 Op 2 . + CDS 84946 - 85116 76 ## LCRIS_00802 hypothetical protein + Prom 85135 - 85194 6.2 91 38 Op 1 . + CDS 85256 - 85675 392 ## LCRIS_00803 dolichyl-phosphate beta-D-mannosyltransferase 92 38 Op 2 . + CDS 85675 - 86604 795 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Term 86624 - 86665 5.2 + Prom 86615 - 86674 11.6 93 39 Op 1 . + CDS 86752 - 87264 356 ## LCRIS_00805 hypothetical protein 94 39 Op 2 . + CDS 87261 - 87536 343 ## LCRIS_00806 putative protein without homology 95 39 Op 3 . + CDS 87570 - 87776 270 ## LCRIS_00807 putative protein without homology + Term 87900 - 87950 8.0 + Prom 87827 - 87886 4.5 96 40 Tu 1 . + CDS 87982 - 90597 2951 ## COG0474 Cation transport ATPase + Term 90605 - 90662 15.1 + Prom 90643 - 90702 6.4 97 41 Op 1 . + CDS 90730 - 91938 960 ## LAF_0101 hypothetical protein 98 41 Op 2 . + CDS 91931 - 92467 402 ## gi|227877307|ref|ZP_03995380.1| conserved hypothetical protein + Prom 92484 - 92543 6.5 99 42 Op 1 8/0.000 + CDS 92783 - 95422 3052 ## COG0525 Valyl-tRNA synthetase 100 42 Op 2 . + CDS 95423 - 96706 1005 ## COG0285 Folylpolyglutamate synthase 101 42 Op 3 . + CDS 96684 - 97361 708 ## COG0637 Predicted phosphatase/phosphohexomutase 102 42 Op 4 4/0.000 + CDS 97397 - 98029 431 ## COG2003 DNA repair proteins + Prom 98031 - 98090 1.8 103 42 Op 5 22/0.000 + CDS 98115 - 99119 1226 ## COG1077 Actin-like ATPase involved in cell morphogenesis + Term 99128 - 99153 -0.5 104 42 Op 6 . + CDS 99165 - 100016 696 ## COG1792 Cell shape-determining protein 105 42 Op 7 . + CDS 100016 - 100555 490 ## LCRIS_00819 rod shape-determining protein MreD + Term 100560 - 100599 7.1 - Term 100548 - 100586 3.1 106 43 Tu 1 . - CDS 100597 - 100722 87 ## - Prom 100743 - 100802 4.5 + Prom 100735 - 100794 9.2 107 44 Tu 1 . + CDS 100816 - 101145 246 ## LCRIS_00820 hypothetical protein + Term 101171 - 101210 4.1 + Prom 101189 - 101248 11.8 108 45 Op 1 29/0.000 + CDS 101316 - 101747 355 ## COG2001 Uncharacterized protein conserved in bacteria 109 45 Op 2 . + CDS 101753 - 102700 589 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 110 45 Op 3 . + CDS 102714 - 103076 420 ## LCRIS_00823 cell division protein FtsL 111 45 Op 4 4/0.000 + CDS 103154 - 105235 1776 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 112 45 Op 5 28/0.000 + CDS 105242 - 106210 1154 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 113 45 Op 6 4/0.000 + CDS 106218 - 107597 1669 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 114 45 Op 7 3/0.000 + CDS 107599 - 108705 1110 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 115 45 Op 8 25/0.000 + CDS 108722 - 109579 564 ## COG1589 Cell division septal protein 116 45 Op 9 35/0.000 + CDS 109663 - 111003 1295 ## COG0849 Actin-like ATPase involved in cell division 117 45 Op 10 . + CDS 111018 - 112361 1709 ## COG0206 Cell division GTPase 118 45 Op 11 . + CDS 112379 - 112816 450 ## COG1799 Uncharacterized protein conserved in bacteria 119 45 Op 12 . + CDS 112816 - 113118 209 ## LCRIS_00832 cell division membrane protein 120 45 Op 13 6/0.000 + CDS 113118 - 113918 1379 ## PROTEIN SUPPORTED gi|227877329|ref|ZP_03995402.1| ribosomal protein S4e 121 45 Op 14 6/0.000 + CDS 113924 - 114718 912 ## COG3599 Cell division initiation protein + Term 114893 - 114930 7.1 + Prom 114812 - 114871 4.0 122 46 Op 1 . + CDS 114946 - 117747 3450 ## COG0060 Isoleucyl-tRNA synthetase 123 46 Op 2 . + CDS 117747 - 117950 269 ## LCRIS_00836 cold shock protein 124 46 Op 3 . + CDS 117966 - 118535 528 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 125 46 Op 4 . + CDS 118538 - 118852 195 ## LCRIS_00838 putative protein without homology 126 46 Op 5 . + CDS 118871 - 119566 791 ## COG0775 Nucleoside phosphorylase 127 46 Op 6 . + CDS 119608 - 120726 1113 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 128 46 Op 7 . + CDS 120774 - 121115 494 ## LCRIS_00841 hypothetical protein 129 46 Op 8 . + CDS 121123 - 122250 1366 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Predicted protein(s) >gi|227863065|gb|ACKR01000025.1| GENE 1 2 - 308 201 102 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00700 NR:ns ## KEGG: LCRIS_00700 # Name: not_defined # Def: uncharacterized conserved secreted or membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 102 1 102 186 174 97.0 1e-42 MILLILIVAAIMFIYFNIIPGKRHTSIAWLSLIVTILCVVGIVEHDYNHWGMKTETTSST NTLVSSATPRLPILLYQPLGNGTEKVYLYKTGQLQKKPKSIK >gi|227863065|gb|ACKR01000025.1| GENE 2 309 - 1781 1509 490 aa, chain - ## HITS:1 COG:lin2733 KEGG:ns NR:ns ## COG: lin2733 COG0477 # Protein_GI_number: 16801794 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 3 476 7 480 493 461 53.0 1e-129 MNKQPTDIHGKAYNRNLLVLVLIIGSFCTVLNGTLLSTALPSIMRSFNISTATAEWLSTA FLLVNGVMIPISAWLINRFGSRKMYLSAMSIFFIGTVIAAIAPNFGTLLAGRIIQGLGVG VTMPLLQTIMLSIFPANKRGAAMGTVGIVIGLAPAIGPTLSGWIVDNLSWRYLFSIIAPI AGIVIILAFFLIKDVLPTKKEKIDVWSVTTSTLGFGSLLYGFSEAGNKGWTNPEILGFIG FGIIFVILFGIRQLKMDDPFLDITVFKHFEFSLAAALSGITNLAMVGIEMVLPLYIQNLR GVSAFHSGLMLLPGALMIGIMSPITGRLFDKYGARKMAITGMTLLTIGTIPFVFLTEQSS YTMIIILYAIRMVGVALVMMNVTTSGMNSLPLNKISHGTAVNNTFRQVLSSIGTAILVSV LTTTTNNNMPGKSLLHALPLEYKTRAISATLDGFHASFAMSILFSLIALVLSFFLKKGNR AREHQEKVDG >gi|227863065|gb|ACKR01000025.1| GENE 3 1942 - 2379 415 145 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00702 NR:ns ## KEGG: LCRIS_00702 # Name: not_defined # Def: transcriptional regulator, MerR family # Organism: L.crispatus # Pathway: not_defined # 1 144 1 144 145 267 100.0 9e-71 MKSKKIMHDIFQNLEIGIGEVSKLTGVSQRQLRYWETKGYIKPISDDQSGVRRYNLATLY LIVFIKEQLDEGFTLSAAFEHSKDIRLKSRIVHQFFRETFDDVKVTDSTKGYGEIDLGEF QAEDGSMHHFKGVVDEKGQYVKMDG >gi|227863065|gb|ACKR01000025.1| GENE 4 2463 - 3248 711 261 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00703 NR:ns ## KEGG: LCRIS_00703 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 261 1 261 261 443 96.0 1e-123 MKKRFLIAGASAVMMTLSLTVLSSKPVKAAKNAVDFMTYLSKNKSLTKGQRSSARSAVKL LKTGRLGKKPKASWYNEYVDLHSNDDATSAKNIKAVLPYLNSVNRARRSEGVRSLKVSPL LTAASMLNADYQKRGGLKHTHYFKSIGLENIATQSVGLDPVDTWFSEKKSWNYDVKKNHS LKPAKYSPTWTATYDAAVEGTNGYKMAGHYLNLINRNYRVMGFANVSNTGYGNADSYLGS SKGAGISVAKYKALVNAWANK >gi|227863065|gb|ACKR01000025.1| GENE 5 3315 - 4748 1699 477 aa, chain - ## HITS:1 COG:STM0969 KEGG:ns NR:ns ## COG: STM0969 COG0531 # Protein_GI_number: 16764329 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Salmonella typhimurium LT2 # 9 466 7 466 473 385 46.0 1e-107 MVESQNNSKKMMWTTLAMMAFSTVWGFGNVVNGYVYFDGTKVVFSWIVMFLLYFVPYALM VGELGATFKNAEGGVSSWVNATMGAKWAYYAGWTYWACHVVYISSKGTGGLRAMAWGIFG NTKWYDGLPTAWTQFATLVVFLLFCWVASRGIPVLKGLATIAGSSMFIMSILFIIMMFAA PAINPSAGFHSIDFNWKNLMPTFNVKYFTSLSILVFAVGGCEKISPYVNKVKDPSKNFPK AMMALAIMVMVSAILGTFAMALMFDPKVVNANLNEYISNGAYMAFDKLGEYYHVGGLFMY IYSWCNVIGQFSTLVISIDAPLRMLLGSKEAKEFIPKGLLKLNKHGAYINGIWMVVVLSG GLIAIQALVPNAQAVMAQLVKLNSTTMPLRYLWVFAAYVALRKQQQKFNTTYQMTKHQGL AYTAGIWCFVVTAACCILGIYSPDPFTLFLNILTPIVLIALGLILPGIKKYQEAKAK >gi|227863065|gb|ACKR01000025.1| GENE 6 4917 - 6449 1802 510 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00705 NR:ns ## KEGG: LCRIS_00705 # Name: not_defined # Def: conserved protein with bacterial Ig-like domain # Organism: L.crispatus # Pathway: not_defined # 1 510 1 510 510 868 99.0 0 MLKGKKMLLTFVASAALVGGVFAISQSKVDAKSYSKAVTKIAGNGNYAIYHNVSKKGPSG AFSNTKYFKHGQIQSKKYVSTKKGNFWYIIVDGRNVGWVSQNFFARNQISVAQDVSLVHN SNYSFPTRDAINYATDGQGTAINPDRVNVSHSSVSSSRAGTTKVDYSYGKAKASVNVTVR SDTNEGITSAGASVKSGPKAVHTWNGGSKGSSRNWNQAHGYRSETSSNSYSGNGMTLRTR LFQPRFVSLGYGQAADAMGQVGVIPEGITVNDGIFTASMYTSSSDSRGHLVSYNLNAIKS KYAAQNLTTMGWSTFRSYANNIKVSPYIKLGHGQSLGSSSSYIYVLANNNKTANSTASEE IMQVRKSDMKINKIWTVKTWNGSSAYPRYFHNATFVGDNTMYALFHNGGRHQYEYWKLTR NGDTWAPEEIGATQSNFVTGSPVQGFAYDSNHNQFYIGFNDYIFRVAANGTYKGSHHFNT RREIEGLSVSGSTLYTELAQRAELMTTSTK >gi|227863065|gb|ACKR01000025.1| GENE 7 6864 - 7895 961 343 aa, chain + ## HITS:1 COG:lin2554 KEGG:ns NR:ns ## COG: lin2554 COG2390 # Protein_GI_number: 16801616 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Listeria innocua # 1 342 1 342 348 276 42.0 6e-74 MDSDFSLLEALVPDVLKILRQRYLVLEQISLHAPIGRRSVAQHLGLSERNIRTETEYLCQ LGLIETKSFGMFLTEKGEKTLKDAGPLLDRLFNAGETEVALAKKLGIERTLIVPGNADFQ DRVYEEMGEKLSSALNLLLPLGHSIVTILGGAALARSAKYLSPDLANNRQLEFVPGRGAL GENVETQSNTIVQEMAAKTSGTYKTLYLPEQVSDDAYKSLIRESSIADVLQDISQSDAVI HGIGLAQEMAQRRGYNSIKLSELREKRAVTECFGCFFDEHGKVVDRITQVGLQFENLYKI PHIFAFACGARKAQAIKAYMPNAPHQTWLITDEGASNMILKGK >gi|227863065|gb|ACKR01000025.1| GENE 8 7948 - 8964 1367 338 aa, chain + ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 4 338 3 333 333 408 64.0 1e-114 MTVKIGINGFGRIGRLAFRRIMDLGEKSKDIEVVAINDLTTPAMLAYLLKYDTTHGTFNH EVSSTEDSIVVDGKSYHVYAEPQAQNIPWVKNDGVDFVLECTGFYTSKAKSQAHIDAGAK RVLISAPAGNDLKTIVYSVNEDTLTADDKIVSAASCTTNSLAPMANALDKEFGIEVATMT TIHAYTGTQMTLDGPSRSGKEQDARAAAENIIPHTTGSAKAIGLVLPNLNGKMNGHAQRV PVPDGSETELVSILSKKVTADEVNEAMKKYESPSFAYNGDHIVSSDVLNMTAGSIFDPTQ TMVTTAGDKQLVKTVAWYDNEYSFTCQMVRTLLHFATL >gi|227863065|gb|ACKR01000025.1| GENE 9 9079 - 10290 1734 403 aa, chain + ## HITS:1 COG:lin2552 KEGG:ns NR:ns ## COG: lin2552 COG0126 # Protein_GI_number: 16801614 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Listeria innocua # 1 403 1 396 396 503 67.0 1e-142 MAKLIVDDLDVKGKKVLVRVDFNVPIKDGVIGDDNRIVAALPTIKYIIEHGGKAILLSHL GRVKSDADKKELSLKPVAERLSELLKKPVTFVPSNEGKEVEDAINNMKDGDVIVLENTRF QDIDNDFGKRESGNDPKLGEYWASLGDMFVNDAFGTAHRSHASNVGIATAMKEAGKPAAA GYLLEKEIKFLGDAVENPVHPFVTILGGAKVSDKIGVIENLIPKSDHILIGGGMAYTFLA AQGHSIGKSLFEADKVDLAKELLAKAGDKIVLPVDNVAATEFSNDASREVVGDDIPDNMM GLDIGPKTVEKFKEILKDAKTVVWNGPMGAFEMPNFAEGTLEVGRALADLKDATTIIGGG DSTAAAKQLGIAPKITHISTGGGASLNYLEGKELPGIACVSDK >gi|227863065|gb|ACKR01000025.1| GENE 10 10315 - 11073 990 252 aa, chain + ## HITS:1 COG:SP1574 KEGG:ns NR:ns ## COG: SP1574 COG0149 # Protein_GI_number: 15901416 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 1 250 1 250 252 330 65.0 2e-90 MSRTPIIAGNWKLHMNPEQTTEFVNAVKDKLPDPSKVESLICAPAVDLDALRKAAEGSNL HIGAENCYFEDEGAYTGETSPKVLKEMGMDYVIIGHSERRGYFHETDEDINKKAKAIFAN GLKPIICCGESLETREANKQEDWVVAQIKAALDGLTAEQVSSLVIAYEPIWAIGTGKTAS SDQAEEMCKTIRETVKDLYNEETAENVRIQYGGSVKPANVKELMAKPDIDGGLVGGASLV PESFLELVNYQD >gi|227863065|gb|ACKR01000025.1| GENE 11 11358 - 12407 398 349 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 13 336 8 312 317 157 36 2e-37 MDSLHSTMNHHIKGKHLSFEERVIIQLRLKDGYSLRAIARELNCSPSTISYEVKRGTVEL YHGKVKRYKATQGHDAYQAHRKNCGRKSDFLRKTQFMRYVHKHFFKDGWSLDVCSNRATA VGAFSSRDVVCTKTLYNYVDQGLLDIHNYDLPEKLKRNTKLHRIRRNKKKLGRSIEERPK EINKRNEFGHWECDLVLGHKSKDDEVLLTLSERMSREFLILRIPDKTSVSVMQAFKELQR QYSEHWNDIFKTITTDNGSEFADLSSLEDVSNTLVYYAHPYTSCDKGTVERHNGLIRRFI PKGEAIDNYSLQDIIDIETWCNSLPRKILAYHTPDEIFERELDLIYQAA >gi|227863065|gb|ACKR01000025.1| GENE 12 12781 - 13275 356 164 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00710 NR:ns ## KEGG: LCRIS_00710 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 164 1 164 171 331 100.0 6e-90 MRFWLELNQEKDYGQIPVLNQNGKAEFFIQGNLDNPNHTLYLNNFRKQEVGRLFSDGAGL IASFTIDVVNHSLVGVKKLNTPTANIFYLTQLKYIVTGSIKRGTYTFRSGIKSVASVQTI MGDRGGVLICDITKPEDVPFILLTSVLFTQWHVTPLKLPSFPPI >gi|227863065|gb|ACKR01000025.1| GENE 13 13295 - 14170 921 291 aa, chain - ## HITS:1 COG:SA0517 KEGG:ns NR:ns ## COG: SA0517 COG0561 # Protein_GI_number: 15926237 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 287 1 286 289 155 36.0 1e-37 MIKLVACDLDGTLFNSEMAVSAANAKAVKNAQSSGIEFLIATGRAPRESRSVLKDADLHT SFINLNGALVFDENEQLMIKHSIPKAKAQQLVHLLHRSGFYFEILTANQVYSENLDQRIS NVAHLMVDLNPLLDFRQAVAISAGNKTIMNMKQIHSFDNLLQDPKIEVMKIIAFDSRGHE AFTDIKKEIATMGDLVVTSSSSSNIEINEQHAQKGLALLDYAKLKGIEPEEIAAIGDNLN DESMIRAAGTGVAMGNAIPAIKKIAQVVTKRNNEDGVAYILNKFIADNNNI >gi|227863065|gb|ACKR01000025.1| GENE 14 14238 - 14936 478 232 aa, chain + ## HITS:1 COG:BH3850 KEGG:ns NR:ns ## COG: BH3850 COG0692 # Protein_GI_number: 15616412 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Bacillus halodurans # 5 223 3 222 224 256 56.0 3e-68 MAKELIGNDWDQVLDPVFASEKYHELHNFLKEEYSTKQIYPDMYHIFTAFKLTPFAKTKV VILGQDPYHNPGQANGMSFSVMPGTTLPPSLKNIYKELYDDVGARPVNHGYLKKWADQGV LLLNAVLTVPYGHANGHQGKGWEDVTDTAIKALSERGKVVFILWGRFAQNKIPLIDQSKN FIIKSSHPSPFSADRGFFGSRPFSRCNMALKNFDETPIDWQLPETISKSDLA >gi|227863065|gb|ACKR01000025.1| GENE 15 14947 - 15936 1138 329 aa, chain + ## HITS:1 COG:BS_pta KEGG:ns NR:ns ## COG: BS_pta COG0280 # Protein_GI_number: 16080818 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Bacillus subtilis # 3 324 4 323 323 342 57.0 6e-94 MSVFSLFKKQVEAAKDKKRIVFPEGDDLRILTAIANLKKDGIIEPILIGNPDEIAKLVKE NNLDLAGVKIYDLNHYDELDQMAAEFVKARRKDTSIAEAKLKLAQGNYFGTMLVKMGKAD GMVSGAAHSTANTVLPALQLIHAAKGMHRVSGAFVMEKGDERYIFADCAININPDEETLA EIGYQSALTAKMAEIDPKVAFLSFSTKGSAEGPMVDKVHDAAAMFQKDHPEIPADGELQF DAAFVPAVSEKKAPNSKVAGHANVFVFPELQSGNIGYKMVQRLGGFTAVGPILQGLAAPV NDLSRGCSEQDIYDLAIVTAAQALAKDEK >gi|227863065|gb|ACKR01000025.1| GENE 16 15936 - 16415 431 159 aa, chain + ## HITS:1 COG:lin2184 KEGG:ns NR:ns ## COG: lin2184 COG0802 # Protein_GI_number: 16801249 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Listeria innocua # 13 148 18 145 153 121 47.0 6e-28 MTKLEINSADGMQKLGASLAKTAQPYDLLLLNGDLGAGKTTMTQGLGRALGIHRPVKSPT FTIVREYREAKLPLFHMDFYRLENDDLSSIDLEGYLAEPGLVVIEWPQLVMNDLPDEYLQ LTITRVDDSWDSTKRVVEFTPHGKRNEEWVKAALTEFNK >gi|227863065|gb|ACKR01000025.1| GENE 17 16453 - 16986 607 177 aa, chain - ## HITS:1 COG:SA1710 KEGG:ns NR:ns ## COG: SA1710 COG0847 # Protein_GI_number: 15927468 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Staphylococcus aureus N315 # 3 175 6 171 184 106 36.0 3e-23 MNFIAMDFETANHYPESACSLALVMVRNNKIVDRFYTVINPQMPFDARNIQVHQITAEDV KNAPTMAEVWPHIKELYQPGMLVAAHNARFDTNVMRQSLARYGIEEPHYLVIDTLASSKL LEPELPDHKLDTVSEALNVELWHHHNALSDSEACAGILIKQEEQFGDEAIKNLVYQI >gi|227863065|gb|ACKR01000025.1| GENE 18 17082 - 17978 928 298 aa, chain + ## HITS:1 COG:lin1459 KEGG:ns NR:ns ## COG: lin1459 COG0812 # Protein_GI_number: 16800527 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Listeria innocua # 11 298 11 298 298 314 55.0 1e-85 MELLDLKEKGIDIKEQIPLSRYTFTKTGGPAEYLAFPKTTDEVEQLVKVTRENEIPLTII GNASNLIIRDGGIDGLVIILTELKEIKVEDNQVTADAGARIIDTAFAAAHHGLSGMEFAA GIPGSIGGGIFMNAGAYGGEMQEVVQSVNVLTRAGEFKTYSNAEMNFSYRHSLVQENGDI VLSATFALKSGDKLEILDHMHYLNALRRYKQPLEYPSCGSVFKRPTGHFVGPMIIKAGLQ GKQIGGAQDSMKHAGFIVNKGGATATDYLNLIHLIQKVIKEKFDIDLRTEVRIIGKEK >gi|227863065|gb|ACKR01000025.1| GENE 19 18045 - 19142 1001 365 aa, chain + ## HITS:1 COG:lin0797 KEGG:ns NR:ns ## COG: lin0797 COG3842 # Protein_GI_number: 16799871 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Listeria innocua # 3 359 5 361 364 442 60.0 1e-124 MDIIKLKHITKKYDDGFVALKDINLTIESGKFYSLLGPSGSGKSTILRIIAGFTQPSSGQ VLFDGNDITDLDASKRHINTVFQNYALFPHLDVFQNVAFGLKIKKRPMSEIKPAVKDALH MVRLDGYANREISELSGGQQQRVAIARAIVNEPKVLLLDESLSALDKRLRKDMQFELRAI QKKLGITFIFVTHDQEEALSMSDEIFVLNDGQIQQSGNPVAIYDEPVNDFVARFIGDSNI LSGRMIHDYEVEFANNKFKCADGGMKPNEKVEVVIRPEDLDIVKPEDGKIVVTAQTQLFL GDHFEIKAIDANENEWLIHSTNGVKLGQRVGLFFDPEDIHVMRLNESQHDFDARLEKYEA DENEK >gi|227863065|gb|ACKR01000025.1| GENE 20 19156 - 19944 599 262 aa, chain + ## HITS:1 COG:lin0798 KEGG:ns NR:ns ## COG: lin0798 COG1176 # Protein_GI_number: 16799872 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Listeria innocua # 1 257 10 265 269 295 65.0 5e-80 MIPYLLWIILFVILPILLILWYSFTDSNNAFTLRNYVEFFKNGTFLKMMLNSFWYAFLIT LLTLVISYPAAYFLIKMKNQQLWLLLIILPTWINLLLKAYAFIGILGNDGLVNKFLHLFG IGPVNILFTDFAFIFVATYIEIPFMILPIFNAIKEINPAVIHASEDLGASKWQTFRYVLW PLSRPGVESGVQAIFIPSLSLFMLTRLIGGNRVITLGTAIEEYFMTTMNWNMGATIGVIL IALMVVVMLITSKKARRKKVDL >gi|227863065|gb|ACKR01000025.1| GENE 21 19941 - 20756 593 271 aa, chain + ## HITS:1 COG:lin0799 KEGG:ns NR:ns ## COG: lin0799 COG1177 # Protein_GI_number: 16799873 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Listeria innocua # 10 260 9 259 268 283 65.0 3e-76 MRNRHLIAKIYLAFTLILLYVPIFYLIYFSFSSGKNMNKFEHFTWAHYQTLFQDNRLLAI FLETILLALLSSLIATIIGTFGAIAIAAMKKESNKKTTLALNNVLMVSPDVIIGASFLIF FTALGIGLNFGSVLLSHIAFSIPIVVLMVLPRLNEMDMSLIDAARDLGANSWQVFSDVLI PVIMPGIFSGLFMALTYSLDDFAVTFFVTGNGFSTLSVEIYSRARQGIDLEINALSTVMF IFVLLLVGIYYFITTKKGRKKNHRVMGGLVK >gi|227863065|gb|ACKR01000025.1| GENE 22 20753 - 21826 1135 357 aa, chain + ## HITS:1 COG:SP1386 KEGG:ns NR:ns ## COG: SP1386 COG0687 # Protein_GI_number: 15901240 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Streptococcus pneumoniae TIGR4 # 1 357 1 356 356 396 54.0 1e-110 MKKIMMAIAAILIACAGLWGLSHHLEKSSTGKNKQNLIIYNWGDYLDPKLIKKFEKQTGY HVVYETFDSNEAMYTKIKQGGTAYDLTIPSEYMVTKMRKAHLLDQLDQKQIPNLKYIGKS FLHKSFDQNNDYSVPYFWGTLGIVYNDKFVKPGAIKTWNDLWSKKYRRQILLVDSARDAM GMALVSLGYSMNTTSSIKLHLAQTKLNSLGPNIKAIISDEMKMYLVQNEAAIGVTWSGEA YEMMEQNPHLHYVVPKQGSNLWFDNFVIPKTVQNKKAALKFINFMLEPKNAAQNAEYVGY ATPNTAAQKLLPKKVRDDRQFYPTQSTLKNLQVFRDLGPKKTQEYNDLFLEFKMYAR >gi|227863065|gb|ACKR01000025.1| GENE 23 21865 - 22707 1007 280 aa, chain + ## HITS:1 COG:lin2225 KEGG:ns NR:ns ## COG: lin2225 COG1624 # Protein_GI_number: 16801290 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 4 262 2 260 273 287 54.0 1e-77 MHFNISNLFTWNNFSIALDILIIWYLVYRLIMMIRGTKAVQLAKGIVFIFIVRIIAGLLQ LHAVTYIVDQIVSWAVIGIIVIFQPEIRRGLERLGRTPIFNGRGESAHTQSVKMVQELDK AIQYMSKRRIGALITIQQDTGLDDYIETGIKLDADISGELLINIFIPNTPLHDGAVIINN NRIAVAAAYLPLSDNSMIPKRLGTRHRAAVGISEVTDAVTIVVSEETGGVTITRNGRFLV DLSREEYLKYLNAQLVPKEEKKVPWIRRVINKVWKWGADR >gi|227863065|gb|ACKR01000025.1| GENE 24 22704 - 23663 872 319 aa, chain + ## HITS:1 COG:lin2224 KEGG:ns NR:ns ## COG: lin2224 COG4856 # Protein_GI_number: 16801289 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 53 313 49 311 452 130 30.0 2e-30 MKDFWDKRWVIRIISLLFAILLVVYIDSTQTGFVTQGESKKTRQTANETQTISVPLQVSV NTDKYYVVGYPEKVKITLEGSNALVTSTVNTQSFRAYIDLTHKKIGKQTVKVEVTGLNSQ LSYTINPATVNVDIERRKSRTMPVQIEYNKNAVANGYNIGTASVDPQQVEVTGARSEVNQ IDQIVAKLPLPNGINHDYERQVILIAEDKKGRQLNAVINPSTVKASLPISLFKKKVKLNL KPKNEKNNKVYSVTAKNDEVTLYGQKETLAKIKQLDVDVDLKGISYSTVKNYPLVLPKGV ARVDPENVQISIKVKNANN >gi|227863065|gb|ACKR01000025.1| GENE 25 23686 - 25038 1728 450 aa, chain + ## HITS:1 COG:BS_ybbT KEGG:ns NR:ns ## COG: BS_ybbT COG1109 # Protein_GI_number: 16077245 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Bacillus subtilis # 1 449 1 446 448 527 62.0 1e-149 MLKYFGTDGVRGVANQGLTPEMAFKLGRDGGYVLTKNKKDGEQAKVLVSRDTRISGQMLE YALISGLLSVGIEVLEVGVITTPGLSYLVRAQGADAGVQISASHNPVEDNGIKFFGSDGL KLSDEMEGEIEKLIDAKEDKLPRPSAKGLGTVTDFHEGSAKYLQFIENTIPEDLGGIKVV IDGANGASSALISRLFADCGVDFTTIATHPDGLNINDHVGATHTEKLQEEVVKQGAQLGL AFDGDADRCIAVDENGNEVDGDHIMYVLGSYLAEHGRLKKDTIVTTVMSNLGFTKALEKE GLKNVRTQVGDRYVSEEMRAHGYNLGGEQSGHVIMSDYHNTGDGMLTGLHLMLVMKKTGK SLSELLKDFKDYPQCLVNVPVADKKSWKEHQPILDEIAAVEKDMAGNGRVLVRPSGTQDL LRVMAEGPTQEETDAYVDRIVKVVEKEMGK >gi|227863065|gb|ACKR01000025.1| GENE 26 25139 - 25954 789 271 aa, chain + ## HITS:1 COG:lin0298 KEGG:ns NR:ns ## COG: lin0298 COG0561 # Protein_GI_number: 16799375 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 4 271 3 268 270 160 36.0 3e-39 MAIKLIAVDLDGTLLSSNNTILPETQRMLRVAVQNGIKVVLATGRPLSGVLNFAKQLGIE GDDQYAIVFNGAVIQTISGRVLMSQELNYQDFNNMLRFQRLSHVNVHFETTKYFITTDRD LSVQMQINAALTDNIMKVRDRKEIPKDFTFNKVGFTSTEGADQVEKLWNSFPDWAFQTYD IVRSFDSIIELNALGASKGNALMDLASRLKIAQKDVMIFGDQGNDLSMFSNPNFMKVAMG NAISEIKDKADYVTDDNDHNGIAKALKKFVL >gi|227863065|gb|ACKR01000025.1| GENE 27 25985 - 26425 326 146 aa, chain + ## HITS:1 COG:SPy1717 KEGG:ns NR:ns ## COG: SPy1717 COG3682 # Protein_GI_number: 15675568 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 11 142 4 135 144 99 34.0 2e-21 MAETKDDRNSITQSEWEVMRIIWTLGEVRTGQVIKELQGKKDWSDSTIKTLMRRLVQKGL LKTRKEGRCFVYKPTISQRKMMSEVTLHMMQNMCDMHKGEVLIQLLKEAPLSKGDIKTMQ QELKLKEKDAPDMVPCNCLPSEKSRC >gi|227863065|gb|ACKR01000025.1| GENE 28 26440 - 27156 590 238 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00726 NR:ns ## KEGG: LCRIS_00726 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 238 1 238 238 399 98.0 1e-110 MKNIVKIILRLIMVGLAAVSFWLLMTSNVNLKINDTQAMGKEVINRVVDDSDNPNLKAGV ELLEASGLEKTLLEQLPPKYQVNLSYADLYRLCEKYNDQGKLTTKDLGLTSKSKLEEIIN EYLVKQINHKLKEDSEDVNHIITIYEYSIFAVALLFLLAAILILFGRSSASIPLALATIA SFVALWLASNEAMTALQSRVYSGILVTLSQEIWVGLTVGVITAIIWPVINRLTKRKKR >gi|227863065|gb|ACKR01000025.1| GENE 29 27156 - 27611 610 151 aa, chain + ## HITS:1 COG:SP2028 KEGG:ns NR:ns ## COG: SP2028 COG0394 # Protein_GI_number: 15901849 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 151 1 140 142 106 37.0 2e-23 MKKILFVCHGNICRSPMAEAVMQYLLKENNLADQYTAESKATTQDALGHGIDARAQRELV AKHIPYDRGHRASQMTRSDYDNYEYLICMDEENFADMNRITGGDPEHKEHKILEFAGSYA DVDDPWYTNDFETAYNEIYRGCEGLIKKLTK >gi|227863065|gb|ACKR01000025.1| GENE 30 27636 - 28781 1462 381 aa, chain - ## HITS:1 COG:L79277 KEGG:ns NR:ns ## COG: L79277 COG1929 # Protein_GI_number: 15672838 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Lactococcus lactis # 2 379 4 377 385 395 58.0 1e-110 MKFVLAPDSFKESMTAKEVCIAMKNGIQKVIPNAQIIAVPMADGGEGTTDSLVDATNGRK YQINVTGPLNQKVSAYYGISGDGQTAIIEMAQASGLSYVAKSKRTPETILKTTTYGTGEL INAALKHNVKKIIIGLGGSSTNDGGAGMAQALGVKFFDQNHHEITQKLAGGALDQIANID LSSINPRIKDTKFLLASDVTNPLTGPNGASSVFGPQKGADDTTVKILDQNLSHYAQVIEQ TIDKNVAQISGSGAAGGLGAGLIAFTNASIHPGVQLIAQETKLEAKIKDADYVFTGEGGT DFQTKFGKTPFGVAKIAKKYHIPVISLAGYLDQGIDQLYDEGFTAIFGILAKAEDIEQAL KDGPINVTRTTENIVRLIAQK >gi|227863065|gb|ACKR01000025.1| GENE 31 28991 - 29824 665 277 aa, chain + ## HITS:1 COG:lin2530 KEGG:ns NR:ns ## COG: lin2530 COG3711 # Protein_GI_number: 16801592 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 274 1 277 285 151 32.0 2e-36 MKFLKTFNNSAALIENNQGQEEIVLGKGVGFGLKKSDPVDESKIERRFVTKDEVDQVKGF DPKTIEVTNKVLQLVEPLLQIKFNDFQYLALADHIDFAVTRIKDHIDIAPANNSWEVQNL FPKEFAAAKKVVNLINQEMQIKLPQSESVLMTYHLVNAKSDVSQVQETIQITNLIRGIID IIQLQYSMQLDTSSFNYSRFVSHLRILLVRFLRNKQKEEASLDPAMLGFMKIKYSKAYET AERITTYLHAKMGWDLDSDDEFYLVLHIWRVTSRQDN >gi|227863065|gb|ACKR01000025.1| GENE 32 29952 - 31973 2347 673 aa, chain + ## HITS:1 COG:lin0026_2 KEGG:ns NR:ns ## COG: lin0026_2 COG1263 # Protein_GI_number: 16799105 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Listeria innocua # 92 468 5 380 399 338 47.0 2e-92 MAKNYDELAKTIIQNVGGKDNVTSVVHCATRLRFKLKDEKKANDDVLKDTDGVVTVVKAG GQYQVVIGNEVADVYDAVVKEGGFNGGGQVPDDDVEDNSSFVDKAVALISGIFTDILAPL SAGGIIKGLVVLVGAMGWLSTKSGTYQILYAIGDSIFYFLPVFLGVTAARRFHMNQFIGL AIGATLTYPTMVQLAASKTVLGTLFKGTAFASEIHTTFFGIPVITMNYTSTVLPVLFTVW FASIIEHWAKKWIPSVVQMFLVPVVTMIIALPVAFIVIGPVMTWVGDAIGAVMSGVYNFS PIIAGLLMGALWQVLVIFGVHWGIVAVTTADLAALGYDPILGLSCMVCYAQIGVVLAIIR QTKDKKLKETATGAFFSGLFGVTEPAIYGITLPRKTPFVLSCIAGAVSGAIIGAFHSVLY IMPSMGFFAIPAYINPKGGSMTTIVGVIIAGIVAFIAGFALQMLFGKKSVDAEYNKKQAQ KVADAANEAANITKSAPVQAILSEEKENPSTKLVSPLNGEVKPLSEIKDEVFSSGAMGEG VAIEPSEGVLHAPADGKIALVFPTGHAVGLNTTDGAEVLMHIGMDTVNLQGKGFKTLVEK GQEVKAGDPLVKFNIKEIKAAGYEVTTPVVVTNSKKYESVQQVAQGEVKVGQEILSLQGS TAEVKTTGQVQTN >gi|227863065|gb|ACKR01000025.1| GENE 33 32015 - 33490 1958 491 aa, chain + ## HITS:1 COG:CAC1405 KEGG:ns NR:ns ## COG: CAC1405 COG2723 # Protein_GI_number: 15894684 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Clostridium acetobutylicum # 1 491 1 473 473 523 53.0 1e-148 MSFPKNFLWGGATAANQIEGAYDEDGKGLSVTDITTAGSLDAPRMLTYKLNGKLEKTPGV PGAGLPEGAVGAIDPNEYYPNHVAIDFYHHYKDDIKMFADMGFKTFRLSIAWTRIFPKGD EEKPNQAGLDFYRRVFEECKKYDIEPLVTISHYEDPLYLSEKYHDWGDREMIDMYVKYAK TLFEEYKGLVKYWLTFNEINSTLLMLSAFGNNVTDDKVYQHAYQKLHYQFVASARAVKLA HEIDPDYVVGNMICGIVDYTLIPDPKDILANRHMWEQNIFYCGDAQCKGKYPTFAKRLWK EHNVHLDITEQDKKDMLEGKVDMYTFSYYMSNVITTHEVKDKVGGNFAAGAKNPYLKYSE WGWATDPDGLQYYLEVMYDRYEIPMMVVENGLGAVDKISDDGKIHDDYRIDYLRMHIKAM NRAIEDGVDVRAYTTWGCIDEVSAGTGQMSKRYGFIYVDRDDEGKGTLDRMPKDSYYWYK KVIASNGADLD >gi|227863065|gb|ACKR01000025.1| GENE 34 33692 - 34612 759 306 aa, chain + ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 6 304 12 305 308 256 45.0 4e-68 MTIGIIVAVLVAFIGVGEAYFFNVAFVPGKKAVLNKYSSKNKKDPLAEKKRWYEDAKKQR WYIKSNTGDYRLDANYIPKKNSDKAVVLLHGFTNNKDTMGPYAAMFHQMGYNVLMPDARA HGQSQGKYIGYGWPEKYDVRKWVRKLIAEEGKKQKIVIFGVSMGGATTMMASGIKMPSQV KAYIEDCGYTSVKDEFLHEAKDIYHLPGPVGQFFVNGLSVIAKANLGFYLGDASAVNSVE KNNKPMLFIHGGKDPFVPTKMVYANYKAAKGPKQLWIAKKAKHARSFETYPREYQRRVSE FLKKYV >gi|227863065|gb|ACKR01000025.1| GENE 35 34657 - 36255 1721 532 aa, chain - ## HITS:1 COG:ycaM KEGG:ns NR:ns ## COG: ycaM COG0531 # Protein_GI_number: 16128866 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 2 466 72 536 540 318 36.0 2e-86 MKTITWPVLTLMALCTVIGLDDIMYNFQNQGMPVITSWIIMCLLYVTPYSLMVGQLGSTF DKEGGGLSSWVRGTDGEFLGYFTAWTYWAASIPYAVDSANEIIVDLGWAVTGTKDFQDKI PTSLFAILTFVVFIVFIIVEHHFSNSMEFLSTIGGGLMIIMVILFVILAFFGLVKSGGHM ATKNFGFHSIVPNFNLHYWSTVGMLIYAMNGCELVAPYVTKMKKPKTDFPKAMIALAVMT AFLTILGSFALGTYFDANHIPNDLKMNGAYYLFDMLGKQFGMGHFLLYFWAWTSLFFNCA LVAVLLDAMTRMLISDTGDKYMPKFLRKKDKNGLPVNGYILTVALSSFIMILGIFLPDMN DIFNWLLNLNSIISPGVTCWIFYSFMRIRKNSKKFPSQYVYIKNDKLAWLVGLLLLLVTA AATILGFAPQDVKQGTGLWWYELIINIVAVVVLIGLGAILPGIRRREVEYGVAFDKAQWI WMGILIIGSIILDIWLGSTKLPMRIALIVIEAVVALILTWLVGRRKPANATK >gi|227863065|gb|ACKR01000025.1| GENE 36 36658 - 36843 334 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227877245|ref|ZP_03995318.1| ribosomal protein S14 [Lactobacillus crispatus JV-V01] # 1 61 1 61 61 133 100 5e-30 MAKTSQIIRNKQKAKYSTREYTRCERCGRPHSVYRKFGLCRECMRELAHQGQLPGVKKAS W >gi|227863065|gb|ACKR01000025.1| GENE 37 36872 - 37516 828 214 aa, chain + ## HITS:1 COG:L119013 KEGG:ns NR:ns ## COG: L119013 COG0702 # Protein_GI_number: 15673091 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 1 213 1 211 211 150 42.0 2e-36 MQVLVAGATGRVGKAVIKRLVDEGYDVIAAARRENAVEVVDPEHVTVQHLDFHDSLNKLT EELGHPDAVIFVAGSRGKDLLQTDLNGAVKLMKAAEANGVKRYVQLSSAFALDQDKWAEI PSLASIIDYDIAKYFSDEWLIHNTNLDYTIIQPGNLMEKPATGKTSFTPEGGENSIDDVA QVLVDSLKYDNTIHQVIIMHDGDTPIDEALSKVK >gi|227863065|gb|ACKR01000025.1| GENE 38 37588 - 38109 500 173 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00736 NR:ns ## KEGG: LCRIS_00736 # Name: not_defined # Def: integral membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 173 1 173 173 280 98.0 1e-74 MDKFHFTKREKIFLLLALLVLVALFISSSMTYQQQEIHDNKINRYFGWLENIVAGWNFTY GGRIHNVQVDGRAGLTQFVLRKMAHFGSYFLLGGFGYLGLRRIFKIKWVAPVLTWFMAIA FAAFDEYHQFLTGDRTPSVHDVMLDGAGALTAILLIMLVLFIKHRFFDQKKQV >gi|227863065|gb|ACKR01000025.1| GENE 39 38194 - 38922 1059 242 aa, chain + ## HITS:1 COG:lin1570 KEGG:ns NR:ns ## COG: lin1570 COG0217 # Protein_GI_number: 16800638 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 238 1 238 241 281 61.0 7e-76 MSGHSKWHNIQGRKNAQDAKRGKIFQKLSREIYMAAKSGGPDPDGNPTLRMVIDKARSNN MPKDNIKRAIKKAEGGSEEHYDEITYEGYAPGGVAVFVEALTDNKNRTASDVRVAFTRNG GSLGATGSVAYMFDRKGYIVIDRSTTDADEDQVLLDVMDAGGDDLQTSDDAYEIYTDPKQ FAGVRDALIKDGYKLADAELTMIPQNTTPVPADKKEQFEHLVDALEDSDDVQNVYTAAAD ED >gi|227863065|gb|ACKR01000025.1| GENE 40 39122 - 40096 788 324 aa, chain + ## HITS:1 COG:SP2053 KEGG:ns NR:ns ## COG: SP2053 COG2804 # Protein_GI_number: 15901873 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Streptococcus pneumoniae TIGR4 # 3 313 2 300 313 210 38.0 3e-54 MKIKEIVSELLIEAIKVKASDIFFFPKKENLMVKFRTGKGLIEYAGFTLETGKEIINFFK YSAQMDIAEHRRPQVGAMTYENEGHEYFLRLSSLGDFSDQESLVIRVIYGIDHSQYFIPE QLGTIEKLAKSRGLIITSGPTGSGKTTTMYEIAKKMSQNKVVMTIEDPVEIHESSFLQAQ VNNEAGIDYQNLLKAALRHRPDILIIGEIRDQGTARLAVDAALSGHLVFATVHAKSTLQT ISRLEGLGIRCDELTNCLTAVSYQRLLVSQGKLKCLMDIAADSLLKKELGKSVRGEFVNW QENLERLWKGGEINHEVYWQFQKG >gi|227863065|gb|ACKR01000025.1| GENE 41 40065 - 41066 745 333 aa, chain + ## HITS:1 COG:SA1373 KEGG:ns NR:ns ## COG: SA1373 COG1459 # Protein_GI_number: 15927123 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Staphylococcus aureus N315 # 6 333 12 355 356 92 25.0 1e-18 MKYIGNSKKDKLNGEEQLAFLDYLKHSLDNGFSLLNSIELMPALWPKRCQLMERMASRMK EGASFSTELLKLGFSKTTVTQVNLALQQGNLVECLQHLATLNRLKQEQMKKLRAELSYPL VLAIMMVILLVFMQSFISTQFSDSSDHSGDMVMIGLIIIVLLGLYFFAKIVTLLNKQDYS SMKKLSKYPLIGQVVMLYIHYLLVYDIGLLLASGFSLQRMCEYAADQEKGSLQQALGQKI GHDLAEGKNLEEIINAEDFLPNSLLVLLQTGSERKSLSKRCLLLGRSLFLDLTEKIEKLV VNVQPACFILIGLCIIGMYLKLLLPMYSMMQGL >gi|227863065|gb|ACKR01000025.1| GENE 42 41127 - 41468 477 113 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00740 NR:ns ## KEGG: LCRIS_00740 # Name: comGC # Def: competence protein # Organism: L.crispatus # Pathway: not_defined # 1 113 1 113 113 146 100.0 2e-34 MKEKMKKYLANIMAKRRKQEGFTLIEMVVVIAIIVILILLIVPNLINQKKNAETKTADAF RTTVQTQVELYKDKYGEPKDFEDLKKDDYLTGDQITKAKKNFTLDSGEVVEKK >gi|227863065|gb|ACKR01000025.1| GENE 43 41443 - 41868 86 141 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00741 NR:ns ## KEGG: LCRIS_00741 # Name: comGD # Def: prepilin-type cleavage/methylation protein # Organism: L.crispatus # Pathway: not_defined # 5 141 1 137 137 262 99.0 2e-69 MAKLLKRNKLAGFSLLEVIITLGVCCGILLIGSLQLKRYQEKLIFDNTVKRVTTALDQTS RYSTIKEVTIGVSYLARSNQILFSGGKYHKSIPVDQNIKITGLDHFKFNLTGYSKPGTVT FSGYGMEKSLKYQMLWGRVAE >gi|227863065|gb|ACKR01000025.1| GENE 44 41865 - 42134 325 89 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00742 NR:ns ## KEGG: LCRIS_00742 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 89 1 89 89 143 98.0 2e-33 MIKVKGFLVIESFIAIIIAVIAVSCFYITVAENQKNGREMELKTDRAYAYHILTKTDLEQ VTVHDRIYQKAGHNHVWDATTKQTFAVKE >gi|227863065|gb|ACKR01000025.1| GENE 45 42088 - 42615 448 175 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00743 NR:ns ## KEGG: LCRIS_00743 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 19 175 1 157 157 249 98.0 3e-65 MFGMQRLNKLLRSKSKGFMLAEAMFSLLITMMVLLILQNLLLSVKKANLNQNQHVNEVAY AYVQLENFMRADKIKAVYPVTKLAISNSASFKCIDQKGDATTYRIEYYKKNVLKVSGAGK GYMPLLFNVEKAAFKTTKDSIIIRVTEKNKGVSDLVFQLDEEQEKKNAKTKEKDA >gi|227863065|gb|ACKR01000025.1| GENE 46 42587 - 42751 108 54 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00744 NR:ns ## KEGG: LCRIS_00744 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 54 1 54 54 90 100.0 2e-17 MLKPKKKTHNVKGSALLSSVLVLMTTLLFIKMYQDIYHASMENNRLIIECLTDD >gi|227863065|gb|ACKR01000025.1| GENE 47 42810 - 43811 1005 333 aa, chain + ## HITS:1 COG:BS_ytxK KEGG:ns NR:ns ## COG: BS_ytxK COG0827 # Protein_GI_number: 16080000 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Bacillus subtilis # 18 330 20 327 329 174 33.0 3e-43 MENFEKLFNQFLDCVQTLQTALNVSFTEALVETFDNLESGKIKVENGAPDEKTVAELSQK YQAIDYDEISQKEKAQVFTFLTLKAVNDDGFDVNQMPTPPAIATVVAMLMHKLLKDQKME IVDPAVGTGNLLFSIISQLKALNHSKDNYQLVGIDNDEDMLSLTDVAAHLNNIDIELYHQ DALMPWMCPNADAIVSDLPVGYYPVDENAKNFENQAKKGHSFAHLLLIEQIINNLKPNGY AFLVVPKSILSGKIGADFMPWLTKKVYLKAIVELPDDMFKNKFNQKSVLVFQNHGDEAKA SEVLLTKLGSLKKEEALIQFNVKLNEWYAKINH >gi|227863065|gb|ACKR01000025.1| GENE 48 43856 - 45040 1527 394 aa, chain + ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 1 390 1 393 395 415 53.0 1e-115 MKKVLAINSGSSSFKYKLFSLPDEKVLAKGMADRVGLEDSSFEIKLADGTKHVEKTEIPD QEAAVSLLIKFLKGYHVVEELTEIVGVGHRVVNGGEYFKDSTIITKENLPKIYELSDYAP LHNPAEARGIEAFMNVLPNVPEVAVFDTTYHRNLDPVHYLYSLPYEYYEKYGVRKYGAHG TSIRYTAPRAAKLLGKDLKDLKLVICHLGSGASITAVKDGKSYDTSMGFSPIAGITMATR TGDIDPSLVQHLMKVEHKSMDEMIYIMNNKSGLLGLSGISPDMRDVRESDSERAKLARKI FINRIIRYVGAYIAEMGGVDAIIFTAGIGEHDTGVRKAVLDAFAYMGVVVDNEANESVSE GLITKTDSKVAGMVIPTNEELMIERDVVRLTNID >gi|227863065|gb|ACKR01000025.1| GENE 49 45644 - 46531 817 295 aa, chain + ## HITS:1 COG:no KEGG:LBA0742 NR:ns ## KEGG: LBA0742 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 295 2 296 296 460 81.0 1e-128 MEYKNKYFAGERILYGLTDAILDGITFGSGESPLKEAKNIRLKNSIFKWKYPLWYDENVK VENTTFETMSRSGIWYTKNISIKNSALQAPKLFRRTIHIILDNVHFANAEETMWTCNDIK ITNSQINGDYFGKDSQNIYLDHVSVVGNYVFDGAENIEVHNSTFISKDAFWNCNNVTIYD SIIDGEYLAWNTNNITLINCKIESDQGLNYIDQLEIKNGSLIHTDLAFEYVSNLDVELNT KIDSIKNPISGKITVPEIGTLIIDPDKVDPSKTELDCPKIGTKIVHSDTNQTPKD >gi|227863065|gb|ACKR01000025.1| GENE 50 46540 - 47703 1026 387 aa, chain + ## HITS:1 COG:CAC2970 KEGG:ns NR:ns ## COG: CAC2970 COG1168 # Protein_GI_number: 15896223 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Clostridium acetobutylicum # 3 384 2 383 384 302 34.0 6e-82 MQYDFENAPDRSKTDSVKWDVKSDELPMWIADMDFKTAPEIIEAMQQKLTLGAFGYEFPQ ADYFNAVADWYETEHNHRPQTNWMIFTTGVVPAISSIVRRISHIGDNVLVQEPVYNIFYN SILNNGRHVLSSDLAFDGKSYSINWADLEQKLAEPLTTLMIFCNPHNPVGKVWTSEEVQK IADLCHQYHVTLLSDEIHGDLVRQGPDYTPAFSVTGEAQNSVISLVSPSKTFNVAALHSA TAIVPNENLRNMVNRGLNSDEVAEPNLLAIPATIAAYEQGHDWLNALKKQLKQNFAYVQN FIEKNIPEVQIISGNATYLMWIDVQKISTDSQELAEFIRQETGLIISAGSVYRGNGHDFI RINLACPLTMVKDGMQRLATGIRKYNK >gi|227863065|gb|ACKR01000025.1| GENE 51 47796 - 48758 1070 320 aa, chain + ## HITS:1 COG:lin2215 KEGG:ns NR:ns ## COG: lin2215 COG1482 # Protein_GI_number: 16801280 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Listeria innocua # 2 317 3 315 318 315 51.0 8e-86 MEPLFLTPYFRPKIWGGRKLDDIFHYDIPEGKVGEAWIISGYKDDASTVTDGPLKGMSLR DVYLKHPELFGNPKAKEFPLLVKFLDANDNLSVQVHPDDDYARKVENDSGKTESWYVMQA DPGAYIIYGHHAKSREELADMIHKGEWDKLLRKVPVKAGDFFYVPAGTIHALTKGCLVIE TQQSSDVTYRLYDYDRVGKDGKKRELHTQKSIDVTTVPHVDPKLDVKTSQDQDAEIKTLV EPPLSPHFYLWQIDLDGTWKTGLKDHPYLLVSVIKGEGKLEADGKSYDLKMGTNLIIPNE MKNFTFTGKMRIVMSAPGEE >gi|227863065|gb|ACKR01000025.1| GENE 52 48794 - 49183 208 129 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00750 NR:ns ## KEGG: LCRIS_00750 # Name: not_defined # Def: integral membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 129 1 129 129 246 99.0 1e-64 MIYVACGLVMVAVGLIWLITPAKRPNRIYGYLSYLAQVNQDSFKFAQKRASWYCILFGFI QALLGVIIHYLNWDRYFLIWLLTFYLFILLPIVYTEKSLKTFLSKRHELPHDYVDPDQVK HKRTKGFRD >gi|227863065|gb|ACKR01000025.1| GENE 53 49204 - 49908 855 234 aa, chain + ## HITS:1 COG:BS_yclJ KEGG:ns NR:ns ## COG: BS_yclJ COG0745 # Protein_GI_number: 16077443 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 1 230 5 226 227 230 53.0 2e-60 MVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDGIQV AKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVMME EEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQVFSR DQLLELVWGYEYYGEERTVDAHIKKLRQKLEKVGAKVIQTVWGVGYKFDDSQVK >gi|227863065|gb|ACKR01000025.1| GENE 54 49929 - 51362 1193 477 aa, chain + ## HITS:1 COG:lin1543 KEGG:ns NR:ns ## COG: lin1543 COG0642 # Protein_GI_number: 16800611 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 4 463 17 469 479 282 37.0 8e-76 MLSFLLIIVTTISIIGYSEIGYARNQAYTQNYQRMESYANSLGNLAEADSQNGTALLSNN FLNQLEYVLRGDDAHLRIFNDKNEQIYPKTKARIQLSQEVFTTLKNGQEIRIQNNHNENS PISSTKDAYTGVLVPWMNGKNLVGIVWIGSRVKHVERPILMAKRNLLRALLITVAVGLLL SFIISYYSTKRIKRLSRATQKVASGNFNVQIEHKDSDEIDQLAENFNKMVQALKQSNEEV KAQEERRDQFMADAAHEMRTPLTTINGILEGLQYDAIPEDSKPKSIALMQRETKRLIRLV NENLDYEKIRNNQIMLVKTNFNATIILHDLKSQLKQNATKANDELVVEAPDQLPIYADRD RFTQVMVNLVQNAIQFTHDGKIIISGKRIEHGTQLSVKDNGIGMSKNQTKYIFERFFKAD PSRARMGTGESGLGLAIVSSLIKQHGGKVEVFSAPGKGSTFTVTFYDKGYEQFVAKN >gi|227863065|gb|ACKR01000025.1| GENE 55 51404 - 53584 1944 726 aa, chain - ## HITS:1 COG:L13927 KEGG:ns NR:ns ## COG: L13927 COG1368 # Protein_GI_number: 15672787 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Lactococcus lactis # 4 684 11 700 722 566 44.0 1e-161 MEKKKIISFIQTRTGFLTLLVVCFWLKYIFAAYFDFNLGLSDPYQHFIMWLSPVGSAIIL ISFGFYIPKPLISYITMLILDFANTALLFANIIYYRQFSDFLTIKTMSNVGKVSQGLGKS TVALLHPTDIIIWIDLIVIVTLLIIHKIKIDQRSYGLSTPFAITSVGAFVLTLNIFLAET SRPRLLRNTFDRSYVVKYLGIDTFTAYDCFKSAQNVQVTKNANAADLNQILTFTKKQNAA PSSSYFGIEKKRNVIIIHLESFQQFLINLKVNGKEVTPFLNSLYQNKHTLSFNNFYHQVG LGRTSDAENMLETSTYGIPDGSLFTSLGSENTFQAAPQILRQDGYTSAVFHGNVGSFWNR NDVYKNMGYNYFFDKNYYSSQSKDASGYGLKDKLLFAESVKYLEQMQQPFYAKFITVTNH IPFNLDKEDKDPNFKTTNTADQTINNYFETAHYLDEALREFFHYLKSSGLYKNSMVVIYG DHYGLSNSENETLAPIIGESSDTWNTYNNVQMQRVPFMIHANNLKGKINHEIAGEIDVLP TLMHLLGINNKNYVQFGSDMLSPKRQNWIVFRNGTIVSSRYIIVGAKGIKGTVYDRVSGK QIINFTPQEKKEISELAQKAKASLDYSDLLNNHNLLRFYTPTGFVPADPTQFDYSVNYQK MIAIRNELAGNSTSLYSRHRGTTTNLYRTDAAELKDRKQEITQVPDSVKNIKENTKNKNS SENTNN >gi|227863065|gb|ACKR01000025.1| GENE 56 53727 - 54329 186 200 aa, chain + ## HITS:1 COG:BH2294 KEGG:ns NR:ns ## COG: BH2294 COG4767 # Protein_GI_number: 15614857 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Bacillus halodurans # 67 194 13 139 163 59 33.0 3e-09 MLFLGPLYSFLAKQYATNINHFALVKLTLLALDKTIFYFLIFAVLRLIWLLLVRRRRSIR SEASVWVFSFYIILVLMLTTFRNTYFPWQLDFNFSRPLSDINLVFMKETWKLVYAPSHLD FFYNSFGNVLCFVPFGIFFPIVFSKRATFLRTVLMGMLFSVGIETLQFLLVTGVSDIDDV FFNTCGAILGYVIFKIVKKA >gi|227863065|gb|ACKR01000025.1| GENE 57 54417 - 55754 1838 445 aa, chain + ## HITS:1 COG:SP2070 KEGG:ns NR:ns ## COG: SP2070 COG0166 # Protein_GI_number: 15901889 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 1 445 1 449 449 593 66.0 1e-169 MSLIKFDSSKLTQFVHENELSEMQAMVNAANTELRDGTGAGNDFRGWLNLPVDYDKDEFA RIKKAAKKIQSDSEVLICIGIGGSYLGAQAAIEFLNSNFYGKEKNGMPTVVFCGNSLSGS YLYDLIEWLGDKDFSVNVISKSGTTTEPSVAFRIFKDKLIKKYGKEEAAKRIYATTDRQK GALKTEADAEGYEEFVVPDDVGGRYSVLSAVGLLPIAASGADIDELMKGAADARADYTDT DLSKATPYQYAALRNILYRKGYTTEIVENYEPSLRMFGEWCKQLMGESEGKDQKGIYPSS ANFTTDLHSLGQYIQEGLRNLFETVIRVENPRHDVKIPGDEKNLDQLNFLEGKSLNYVND RAYEGVVLAHTDGGVPVMTVNIPDQSAHTLGYMIYFFELAIAISGYLNGINPFNQPGVEA YKRNMFGLLNKPGYENLHDDLAKRL >gi|227863065|gb|ACKR01000025.1| GENE 58 55876 - 57249 1391 457 aa, chain + ## HITS:1 COG:L180636 KEGG:ns NR:ns ## COG: L180636 COG0477 # Protein_GI_number: 15673521 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 2 449 13 448 457 258 37.0 2e-68 MKENTKNVLAVLSAAFMSFVGILTETSLNVTFPTMMKQFGVGLDIIQWTTTGYLLAIAII MICSSYLNERFTARQLFIVACVGFMIGSVISAVAPNFPILLLSRLISALGAGLSTPLMFN LVTEVMPREKWGVYMGIAGLVVAMAPTLGPAFGGITTFYLNWRWIFGFVTIFAIIVFVAG LFVVGKYHEQTKNSFDWLSFIVLAIAFITLTLGVNQISNGFANPLMWILLIVTAILIWLF VRLSKKSSKKLLDLAVFKQKAFVYGALAYFLLQFNNIGISFVLPNYIQIVGKQTSLVGGL ILLPGSIIAGLLNPYFGSLYDKKGAKLPLYLGGFLMAISCLLFAIFGLNLTVMMIIIIYG IMMLGHRMSFSNTLAEALKVEKGASRADATAVCQTSQQLAGSVGTTILAAIMSIWPKKGA ASYALATAQGSQAAFYFTLLMALIILISYWKMFKAEK >gi|227863065|gb|ACKR01000025.1| GENE 59 57358 - 58368 922 336 aa, chain - ## HITS:1 COG:L114054 KEGG:ns NR:ns ## COG: L114054 COG1680 # Protein_GI_number: 15674027 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Lactococcus lactis # 10 331 10 313 328 189 35.0 5e-48 MIDFNKTQHLIESMVFERVVPGVNYTFIKNKQIFTSTTGFASIYPEVTQLSPFAEYDLAS LTKVLATENVLLKLYDQGKLNFTEPLQQFIPEFKDPRVRLYHLLTHTSGIRGWIPHRDKL DHDALLQAIINLPVTDEFEHKMRYADTNFILLGLVIKKIFGKPVQEVVTEQVLNQMPLEN TTFSPQKDDCVPTALVDGHVLQGIPHDPKARQLGIDCGSAGLFSNLQDLVTFAQGYLGLK DVLPYSQKTVSQLFDNKNPQGIKPRSWGWDLRFDPKQNYPIILHTGFTGTLIILDRIKRS GLILLTNRVHPTGHNTVFLAMREKIIHSFINENAKI >gi|227863065|gb|ACKR01000025.1| GENE 60 58676 - 60034 1386 452 aa, chain - ## HITS:1 COG:L114717 KEGG:ns NR:ns ## COG: L114717 COG0769 # Protein_GI_number: 15673088 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 3 444 1 440 449 436 48.0 1e-122 MYMSFKSGIAKVAGKSSYWFLHNALKGGTSFPGKLAMKIDPEVLNSLAKGYETVIVTGTN GKTMTTALIVEALKKKYGDVLTNPSGSNMQQGIVTAFLAHKHKRVKRKIAVLEVDEANVK MVTKLLHPSVFVLTNIFRDQMDRYGEIYTTYDKIVNGIKLAPDATIIANGDASIFSSVEL PNKKIFYGFKLPDDKPENDFKAPVNTDGVLCPKCDHILHYHERIYANLGDFFCPNCGYHR PDLTFTVNKIIDQTPNSSTFQMGNKQYSINIGGTYNIYNALAAYSVARHFGLTEAEVAQA FAENKRIFGRQELIHYGDKDIDLILVKNPVGLDEVLHMLNTEKDDYSLVALLNANHADGI DTSWIWDADFEGLDKEKIKKILVGGQRWHDMGFRLEIAGFDPGQMSTNPDDDSLIEEIKK LPTKKVYILSTYTAMLALRKKMAEKKIIKAGM >gi|227863065|gb|ACKR01000025.1| GENE 61 60164 - 60763 610 199 aa, chain + ## HITS:1 COG:SPy1140 KEGG:ns NR:ns ## COG: SPy1140 COG1435 # Protein_GI_number: 15675117 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Streptococcus pyogenes M1 GAS # 1 197 1 189 189 266 61.0 1e-71 MAQLFFRYGAMSSGKTIEILKVAHNYEAQGRKIALMTSGLDNRSGVGTVASRIGLHREAI PITADMNLFDYIKKMNKADVADGDGKLACVLIDEAQFLKRHHVLECAKIVDVFNIPVMTF GLKNDFQNHLFEGSENLLIFADKIEEMKTICHYCGHKATMNLRINNGKPVYEGEQVQIGG DESYYPVCRYHYFHPGVER >gi|227863065|gb|ACKR01000025.1| GENE 62 60780 - 61868 1578 362 aa, chain + ## HITS:1 COG:L0373 KEGG:ns NR:ns ## COG: L0373 COG0216 # Protein_GI_number: 15672577 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Lactococcus lactis # 7 357 4 355 357 404 60.0 1e-112 MDKVMAQLEGLVAHYEELQEMMADPEVINDTKRYMEISKEEADLREVVQKYKKYKEDKKE IEDNKEIISSETDPDLIEMAKEENSEIEKEIPELEDQIKILMLPKDPNDDKDIIMEIRGA AGGDEASLFAGDLLRMYEKYAERQNWKVSMIDSEPTEVGGYKRVAIMITGDKVYSKLKYE NGAHRVQRIPVTESQGRVHTSTATVAVMPEYEQVDIDIDPKDIRVDVYRSSGAGGQHINK TSSAVRMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDYYESQNQAQYDAKRKNAVG TGDRSERIRTYNYPQNRVTDHRIGLTINKLDRVMNGELDEIIDALILYNQTKQLEELADQ NA >gi|227863065|gb|ACKR01000025.1| GENE 63 61861 - 62706 312 281 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 24 278 39 289 294 124 34 2e-27 MPKMTLKQMRIKAGESAENARPEDVDYVLAERLGLTPSEFELKQEMDLTADQIKQANKDI EKLAKGISPQYILGYAWFLGYKIMVQRGVLIPRFETEELVEWALQTLKSGDQVLDLGTGS GCITVALAKEAQKKGITDLTLYASDVTDTALRTSEENFLTYDLDVTTRKANVLLGLEEFD KIISNPPYIKTSEKNVMDENVLQNEPKEALFAGKDGLDFYKKFAKQVREHLNSHGEFFLE FGFSEEEQLKELFAKELPDFEIEFRKDMAGKPRMVHGRWQK >gi|227863065|gb|ACKR01000025.1| GENE 64 62709 - 63713 1183 334 aa, chain + ## HITS:1 COG:lin2685 KEGG:ns NR:ns ## COG: lin2685 COG0009 # Protein_GI_number: 16801746 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Listeria innocua # 15 334 21 345 345 269 46.0 7e-72 MMETKIFKKDQINDAVKLLAKGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL IVTVSDEEMMAKYAKEVPERAKKLIKHFWPGPLTLLLFVKPGTLPDAVTGGLDTVAFRCP DDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVYHDLKGKIAGIIDDGPTRVGLESTI IDLSVETPIVLRPGEITPEELSEVLGEKVLINTGKVSDKDIPKAPGMKYRHYAPSEPVVV VDDPADFAKIDFNEKTGVAALAPVLAKINLPQANKFDLGNNLVDADHNLFGGLRYFDDQD DIETIYVQGFHEGEESLAYMNRLNKAAGGHHFNK >gi|227863065|gb|ACKR01000025.1| GENE 65 63798 - 64427 909 209 aa, chain + ## HITS:1 COG:SP0745 KEGG:ns NR:ns ## COG: SP0745 COG0035 # Protein_GI_number: 15900640 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 209 274 66.0 9e-74 MGKFVVLDHPLIQHKLTIIRRKDTGSNEFRRIVGEIGGLMTYEITRDLPLEDVEIETPMG KTVQKEIAGKKLTIVPILRAGMGMLNGVLEMVPSAKIAVIGMYRDEKTLKPHEYFFKAPK DIAERECLVVDPMLATGGSANDAIAALKKRGVKEIKLAVLVAAPEGIKAVQEANPDVDIY AAAEDDKLMDNGYIFPGLGDAGDRLFGTK >gi|227863065|gb|ACKR01000025.1| GENE 66 64550 - 65263 648 237 aa, chain + ## HITS:1 COG:lin2679 KEGG:ns NR:ns ## COG: lin2679 COG0356 # Protein_GI_number: 16801740 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Listeria innocua # 1 237 1 237 238 174 41.0 2e-43 MEKSFVFKFMGLNFELSGIIGSTLMVLAVLFICIWLSRKVEMKPNKRQNVFEYLLDFTNG IVKDNVSDKDAQNHLSLYAFVLFLFIWFMNQLGMFMEVKVDDWMFIKSPTADPVATMSFA MMTLLLSFTFGVQRFGVGGYLKSYTQPVGFMLPINLIEEFTNFLTLSLRLYGNIYAGEVL LTLIGNDLAHAGGPFTLVLAAPLAMIWQGFSVFIGSIQAYVFVTLSMVYIGKKVTTE >gi|227863065|gb|ACKR01000025.1| GENE 67 65284 - 65508 424 74 aa, chain + ## HITS:1 COG:SA1910 KEGG:ns NR:ns ## COG: SA1910 COG0636 # Protein_GI_number: 15927682 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Staphylococcus aureus N315 # 8 70 4 66 70 60 58.0 9e-10 MSEAFKYLAASIAAGLAALAASLGNGKVISKTLEGMARQPESAGNLRATMFIGVGLIEAV PILAIVVAFLILFL >gi|227863065|gb|ACKR01000025.1| GENE 68 65565 - 66071 607 168 aa, chain + ## HITS:1 COG:SP1512 KEGG:ns NR:ns ## COG: SP1512 COG0711 # Protein_GI_number: 15901359 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Streptococcus pneumoniae TIGR4 # 14 168 9 163 164 104 39.0 8e-23 MTIQTLFAASHIYLGNAIWYLICFAILMLLIKHFAWGPVSDMMEKRRQKVIDDLDSAASE RKKAETLANEREAALKNSRQEATQILSDAKSNAQNTSKEIVANANEDAAAIRKKANEDAA QAKADALNSARDQVADISVAIAEKVIAKNLSAKDQKDLVDQFIKGLDD >gi|227863065|gb|ACKR01000025.1| GENE 69 66071 - 66619 652 182 aa, chain + ## HITS:1 COG:lin2676 KEGG:ns NR:ns ## COG: lin2676 COG0712 # Protein_GI_number: 16801737 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Listeria innocua # 7 178 6 177 179 88 33.0 6e-18 MALSREEIAARYGAALFGYAQDNDALDTVYNEMVELKKAAEANPQIISVLSDPILSSKDK KDLLTAIEKDFSDDVQNFLNLLFKYDRFADLIDIIDRFVLLYDNEKKVASGVATTAVKLD DDQLKRLGESFAKKYNLNVVRLENKVDPSILGGVVLQVEDRVIDGSVKNKLKKIRAQIID KN >gi|227863065|gb|ACKR01000025.1| GENE 70 66634 - 68145 1561 503 aa, chain + ## HITS:1 COG:lin2675 KEGG:ns NR:ns ## COG: lin2675 COG0056 # Protein_GI_number: 16801736 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Listeria innocua # 1 503 1 503 504 762 75.0 0 MSIKAEEISSLIKQQLEHYDDKLDISEVGVVTYVGDGIARAHGLNDVLSGELLKFDNGSY GIAQNLESNDVGIIILGQFDNIREGDRVQRTGRIMEVPVGDALIGRVVNPLGQPVDGLGE IKTDKSRPIEAKAPGVMDRQSVDQPLQTGIKAIDALVPIGRGQRELIIGDRKTGKTSLAI DTILNQKGQDVICIYVAVGQKESTVRTQVETLKRFGAMDYTIVVEAGPSEPAPMLYIAPY AGTAMGEEFMYNGRDVLIVFDDLSKQAVAYRELSLLLRRPPGREAYPGDVFYLHSRLLER SAKLNDKLGGGSLTALPIIQTEAGDISAYIPTNVISITDGQIFLQSDLFFAGTRPAIDAG NSVSRVGGNAQIKAMKKVAGTLRTDLAAYRELESFAQFGSDLDQATQAKLNRGQRTVEVL KQPLHDPIPVEKQVVILYALTHGYLDAVPVEDIARFQNELFDNFDSSHADLLKTIRETGQ LPDDKKLSAAIEEFSESFTPSEK >gi|227863065|gb|ACKR01000025.1| GENE 71 68156 - 69118 1108 320 aa, chain + ## HITS:1 COG:SP1509 KEGG:ns NR:ns ## COG: SP1509 COG0224 # Protein_GI_number: 15901356 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 320 1 292 292 256 43.0 4e-68 MPASLLELKKKIASVKQTGKITEAMRMVSASKLNQTENRDKGYTVYNDHIRRTISRLISS EVVDNIREKDVSIDKNNVAQIDYTDVFGLGITADMIQPRKNIKTTGFLVISGDRGLVGSY NSNVIKNMMSIFEDERAQGHDIKVLAVGSVAAQFFKKNNINVVYEKNGVSDVPTFDEALP IVSTAIKMFLNGVYDQLYVCYTHHVNSLSSAFRVEKMLPIVDLDIGVKEAEAHKELEYDI EPDPNQVLMKLLPQYARSTIYGAILDAKTAEHASSMTAMQSATDNANDLVSNLTTKLNRA RQAQITTEITEIISGANALE >gi|227863065|gb|ACKR01000025.1| GENE 72 69141 - 70580 1814 479 aa, chain + ## HITS:1 COG:SP1508 KEGG:ns NR:ns ## COG: SP1508 COG0055 # Protein_GI_number: 15901355 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 465 1 467 468 715 79.0 0 MSEGEIVQVIGPVVDVKFPIDKNLPDINNALRVIKSEDESIVLEVTLELGDGVLRTIAME STDGLRRGMKVEDTGGPISVPVGEDTLGRVFNVLGQPIDGGPEFSKDHPREGIHKEAPKY ADLTTSREILETGIKVIDLLEPYVRGGKVGLFGGAGVGKTTIIQELIHNIAQEHGGISVF TGVGERTREGNDLYFEMKASGVLSKTAMVFGQMNEPPGARMRVALTGLTLAEYFRDVEGQ DVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSIQA VYVPADDYTDPAPSTTFAHLDATTNLERSLVEQGIYPAVDPLESSSSALDPEVVGEEHYE VATRVQHVLQRYHELQDIISVLGMDELSDEEKLIVARARKVQFFLSQNFFVAEQFTGVPG SYVPIKESIKGFKLILDGHLDDLPEDAFRGVGPIEDVLKKAQEMGVTPSDPEAKALLEK >gi|227863065|gb|ACKR01000025.1| GENE 73 70592 - 71032 611 146 aa, chain + ## HITS:1 COG:SPy0761 KEGG:ns NR:ns ## COG: SPy0761 COG0355 # Protein_GI_number: 15674809 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Streptococcus pyogenes M1 GAS # 10 140 6 135 138 116 53.0 1e-26 MADPEKLFKVDVVTPNGMIYSHRGSIVDVRAVDGERSIMYNHVPLLTPLVISEVKIKRSR EMDSVVDHIAISGGYIEFSNNVATIIADSAERARNIDVSRAEAAKQRAEQRLKEAREKHD EQTMARAEVALRRAMNRISVYNTKGH >gi|227863065|gb|ACKR01000025.1| GENE 74 71099 - 71329 279 76 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00773 NR:ns ## KEGG: LCRIS_00773 # Name: not_defined # Def: membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 76 1 76 76 92 98.0 3e-18 MFQLGVHVIISIIIYLIAIGLSFQAVKAIQLDKIIRKGHVFETQLLYLFIAIGLGFLVGN FVITFIDTSMQLSNLF >gi|227863065|gb|ACKR01000025.1| GENE 75 71413 - 72402 1132 329 aa, chain + ## HITS:1 COG:BH3739 KEGG:ns NR:ns ## COG: BH3739 COG1077 # Protein_GI_number: 15616301 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Bacillus halodurans # 2 325 3 326 334 403 64.0 1e-112 MARDIGIDLGTANVLINVSGKGIVLNEPSVVAVNTDTNKVVAVGSEAYEMVGRTPGNIRV IRPLKNGVIADFDITEAMLSYFIEKLNVKGFMSKPNILICAPTGVTSIEQKAIIQAAEKS GGGKVYLDFEPKVAAVGAGLDIFKPQGNMVIDIGGGTTDVAVLSMGEIVTSQSLRYAGDR MNQAVISYIKSKHNLLIGSRTAEQIKIEIGSAFEPDQDEQITVRGRDVVDGLPKQTTVTA PEIQKALEPGLMSIIAAAKEVLETTPPELSADIIDRGIMLTGGGALLKNIDKLISYYLQV PVLIADHPLEAVALGTGTLLKNIEKHQRH >gi|227863065|gb|ACKR01000025.1| GENE 76 72515 - 72709 146 64 aa, chain + ## HITS:1 COG:SPy0370 KEGG:ns NR:ns ## COG: SPy0370 COG0759 # Protein_GI_number: 15674519 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 1 49 34 81 86 59 53.0 1e-09 MIDALKKHGPILGLIMGICRILRCNPFIKGGVDPVPDNFTIFRNPHPERYEDPIIASKFH PDSK >gi|227863065|gb|ACKR01000025.1| GENE 77 72718 - 72945 336 75 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00776 NR:ns ## KEGG: LCRIS_00776 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 75 1 75 75 125 97.0 6e-28 MSKKLENIDIEVNELKGKNLPTWEVVIPNRKSIGLIEKVEGRYRATTSKTSNILFANSLE SSINDLLSYFTLHEK >gi|227863065|gb|ACKR01000025.1| GENE 78 72967 - 74160 1127 397 aa, chain + ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 3 385 4 387 414 295 44.0 9e-80 MAKVENETSLFDRLAWNIIIPVLLLALISLYCIYVAALGDPSHIGSPVRAVVMQALWYLI SIAIIMVVMQFDAEQLFKIAPIFFGIGIFLLIAVLFLYNRSVAADTGAKSWFKLGPITFQ PSEIMKPAFILMLARVVKEHNDKYGHTIKTDWLLLGKIIAWLAPVAILLKLQNDFGTMLV FIAIVGGVVLVSGISWKIIVPLYGILILAAIGVIVLVTTSAGQSLLSHFFQAYQFERIKS WLDPSGDTSSGAYQLWQSMKAIGSGQLFGNGFCKASVYVPVRGSDMVFSVIGENFGFVGC VALILIYLYLIIQMVKISFDTRNVFYSYIATGVIMMILFHVFENIGMNIDLLPLTGIPLP FVSQGGSALMGNMIGIGLILSMKFHNRDYMFSTAGDF >gi|227863065|gb|ACKR01000025.1| GENE 79 74241 - 74705 719 154 aa, chain - ## HITS:1 COG:SP1996 KEGG:ns NR:ns ## COG: SP1996 COG0589 # Protein_GI_number: 15901819 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Streptococcus pneumoniae TIGR4 # 1 147 1 147 150 154 55.0 6e-38 MLSQYKNIQVAVDGSKEADLAFSKAVAIAKRNHATLEILHVIDTRSFQNVSSFDSAMVEQ VSKDAEKRMKDYQARATKAGAEDVHYSIEFGSPKTIIGHDFPKKHNIDLIVVGATGLNAV ERLLIGSVTEYVTRTSKCDVLVCRTEEVKDALQG >gi|227863065|gb|ACKR01000025.1| GENE 80 74766 - 75047 283 93 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00779 NR:ns ## KEGG: LCRIS_00779 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 93 1 93 93 137 100.0 1e-31 MAIKIVMIIFILLLLLTSWYMWHRRNGHFLIYDIGGDPRLSNILKWTSVALLAESILGII LLFMGNKYLNLITLFLASLTILAFGLSITQNKE >gi|227863065|gb|ACKR01000025.1| GENE 81 75358 - 76665 1272 435 aa, chain - ## HITS:1 COG:lin1549 KEGG:ns NR:ns ## COG: lin1549 COG2256 # Protein_GI_number: 16800617 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Listeria innocua # 1 428 3 424 427 511 63.0 1e-144 MKPLAYRMRPTNLDEVVGQRHLIGPGKIIRRMVEARLLSSMILYGPPGIGKTSIASAIAG STKYAFRKLNAATDGKKQLQQVAEEGKMSGTVVLLLDEIHRLDKTKQDFLLPLLESGQII LIGATTENPYISISPAIRSRCQIFELKPLSTDDASHAIDRALNDKEKGLGKYNVELTDDA RALLIEKGNGDLRSTLNSLELAVLSTKQELQDKHQDDQKIIITQKEMADSIQMKVQNFDA SGDGHYDLVSAFQKSIRGSDTDAALHYLARLIESGDLVSICRRLAVIAYEDIGLADPDAA EHAIVAIQAAQMVGLPEARIPLANAVIELALSAKSNSAISAIDAALADIRTKKVDSIPAN LKDAHYSGAKKLGHGVNYLYPHDYQNDWVAQQYLPNNLLHASYFAPKGNSKIEARYKATY QKLKQMQSDNLRNNH >gi|227863065|gb|ACKR01000025.1| GENE 82 76666 - 77133 530 155 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00781 NR:ns ## KEGG: LCRIS_00781 # Name: yueI # Def: YueI protein # Organism: L.crispatus # Pathway: not_defined # 1 155 1 155 155 309 99.0 2e-83 MTEDLNKRVEQAAQGITPQTKPDERRRFLGSLRERCLIRMDNTEVKNPELTALFLKHITD FKGYTILINGNITDDGFLGDIEASCSKYDIPFTLVNNETAKTGPHDTAVLVVAKNAINRP RIELKQVYPPEFPKEELAAPKTKESFWHKLFHGDK >gi|227863065|gb|ACKR01000025.1| GENE 83 77225 - 77932 1157 235 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227903670|ref|ZP_04021475.1| 30S ribosomal protein S4 [Lactobacillus acidophilus ATCC 4796] # 1 235 1 235 235 450 92 1e-125 MGENVNPRCTNVELMLNILLQKLLFKFYGGFFMSRYTGPSWKRSRRLGISLSGTGKEISR RNYAPGQHGPNNRGRLSEYGQQLHEKQKLRWMYGLNERQFRTLFTRAGKIREGQHGVNFM ILLERRLDSLVYRLGLATTREQARQLVNHGHITVDGKRVDIPSYEVKVGQTIGLKEKSKN LQQVKDALEAVTARPSFVSFDENKMEGTLVRLPERDEMEPEIDEALVVEWYNKLL >gi|227863065|gb|ACKR01000025.1| GENE 84 78121 - 79833 1797 570 aa, chain + ## HITS:1 COG:lin1636 KEGG:ns NR:ns ## COG: lin1636 COG4477 # Protein_GI_number: 16800704 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Listeria innocua # 8 566 4 564 571 197 23.0 4e-50 MSSIQAIIIIAVVILIIVVVAAMLMINRKQLKEIEAIDAAVTEIEKMHLEDDITRLDKMD LAGESLTTLNTWRKSYTEAAKKKLPRVHKLVEEAANENATYRLFKARKNIKQAQEIIKPT LEDARNTKAVFTELLESNKENQIQYDALIKVYRELRKDILANSFEYGAAIDQVEDQLASM ESDFEEAKNLSSQGDHVEAKRVLSKIRMSLGNLQKRLKPLKEGYHQLEVVFQDQLKELSD AYKKMISEKYYLTSVDVLGRIKEIHDEIDGARKLLAETKVDELAKENKKISGEIDDLYDV LAKEYKARPFVEKNQSKMLTLISHQQTASKKLVEKLRHIDESYELTHGELEKSKDLEKEV NEMYHQYTIDTQNIADGKGVYSAIQDSWLQMLDRLREIDAEQAKMSTDVDGLYDSENVAN DSIKRFKQEVSLVYRRLERRNLPGNPDSFVQMYTLVVNEIGHVSNELSQVRINMEKISAE LIQISDDVERLKREADDIINSANLVELTMQYSNKYADKDSIAQAQKTAMQLYNEYNYKEA LDTIATAIEKVEPGSYQRLENAYYSEEKSN >gi|227863065|gb|ACKR01000025.1| GENE 85 80029 - 81081 1054 350 aa, chain + ## HITS:1 COG:L122222 KEGG:ns NR:ns ## COG: L122222 COG1104 # Protein_GI_number: 15672519 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Lactococcus lactis # 1 345 37 380 381 340 51.0 3e-93 MGDRAHQLLEASRKQIADLLGTKQHEIFFTSGGTESNNAAIKGTAIQKREFGKHIITSSV EHASVANSFNALENLGWRVTRLPVDKEGRVNVNDLRNAIDSDTTLVSIMGVNNEIGTIQP IDEISDLLENYPTIQFHVDNVQALGKNIWDKVFTPRVDLSSLSAHKFHAPRGIGILYKKE GKMLTPLHDGGGQEKGLRSGTENLPAIAGMAMAIRLLLEDEPEKAKREAEIKAKIVDYLK DKPGINIFSPVSDGFAPHILCFALEGIRGETLVHTLEDQDIYTSTTSACASKTADEASTL VSMRIDDKIATSAIRLSFDETNTLQEADEFIKVFDKIYNHFAKINHLGEN >gi|227863065|gb|ACKR01000025.1| GENE 86 81081 - 82298 1385 405 aa, chain + ## HITS:1 COG:L183112 KEGG:ns NR:ns ## COG: L183112 COG0301 # Protein_GI_number: 15672361 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Lactococcus lactis # 3 405 5 406 406 473 58.0 1e-133 MEYTEVMVRYGELSTKGKNRKDFINRLASNVEKVLKDFPQIEFHPRHDRMHIVLNGASFK DVDQRLKKVFGIQTYSPAIKIPKTLEDIEKTSLELMQETFKPGMTFKVNTKRSDHKFEYD TNQLNNLVGDYLFDHMDGLKAEMKHPDLVLRIEVRQDAVYISNQLLHGVGGMPVGTAGKA VMMLSGGIDSPVASWLALKRGVDIEMVHFFSPPYTTEKALAKAKELTGILANYAGKINFI AVPFAEIQETIKEKLPEGYLMTVQRRFMLQLADRIRAQRGGWAIFNGESVGQVASQTLQS MVAINDVTTTPVIRPVATMDKTEIIAKAEEIGTFDLSIQPFEDCCTIFAPPRPKTKPKLE KAREYEARLDVEGLIERAMAGIEITPIYPNEKFLDDKAQEDADLL >gi|227863065|gb|ACKR01000025.1| GENE 87 82525 - 83781 895 418 aa, chain + ## HITS:1 COG:MA2121 KEGG:ns NR:ns ## COG: MA2121 COG2865 # Protein_GI_number: 20090964 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Methanosarcina acetivorans str.C2A # 3 356 15 375 458 132 29.0 2e-30 MRETKNLEFKEKLTNTFLKTVSAFANYGSGKIKFGIKDDGSIVGVKNPVEFCLNVENKIN DSIKPNPDYNLEIDPKTNVVTLTVKQGVNPPYLYKSKAYKSNDSASIEVDRSELSQLILI GENRTYDSLTAMNQNLSFNILEEALKEKIGIKSLTSDILITLNLERKDTSYTNAGELLAD KNNYRGIDIVRFGESINIMLDRASYEHESILKEYKQAIQKYRQYYQHEEIQGATRNIVSQ IPEEAFREAIANALVHRVWNINSQIKISMYDDRIEVVSPGGLPQGLSKEEYLSGQISILR NPIIANVFFRLGLIEQFGTGVRRINDSYRSSLVQPQFEIFDNSIKIILPVLKFITDDLSN DEKKVYQIIHEGADTTKQISQMSKFGRTKVLKILRQLEKQGYIRRMGEGRATKYILSK >gi|227863065|gb|ACKR01000025.1| GENE 88 83915 - 84619 548 234 aa, chain + ## HITS:1 COG:BH3273 KEGG:ns NR:ns ## COG: BH3273 COG1187 # Protein_GI_number: 15615835 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Bacillus halodurans # 1 232 1 230 238 216 51.0 4e-56 MRIDKYLANMNVGSRKEVHQLIKKGIVAVNDVIVKTPKQQVKESDQVTVNGDAVAYQKYH YFLLNKPKGVLSATEDRNQPTVISLLAPQDRYQGIVPVGRLDKDTTGLLLLTNDGQLNHE LLAPGKHVDKVYRAEIAGVANDATVKTFASGMTLGDGTKLQPAELKILSQDEEHDRSTTE IKICEGKYHQIKRMFGAVGMKVVELERISMGKLSLPANLKRGEYLELKLEDIVG >gi|227863065|gb|ACKR01000025.1| GENE 89 84720 - 85025 201 101 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00802 NR:ns ## KEGG: LCRIS_00802 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 89 1 89 293 174 96.0 6e-43 MENTHKKKKPWFGFTEDVIFGEIMSNKNFCKHVLQGLVPEIEIRDIHYLQKQRKVADPKH PKQKAVILDILVEDVDGNLYDFEMQHISKFKVLLCYLSLHV >gi|227863065|gb|ACKR01000025.1| GENE 90 84946 - 85116 76 56 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00802 NR:ns ## KEGG: LCRIS_00802 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 8 52 111 155 293 92 91.0 4e-18 MEICMILKCSTYRNLKCCYVIFLCMFDPQGRHKIKSSYHLYEDTNKTDRLNDKNYN >gi|227863065|gb|ACKR01000025.1| GENE 91 85256 - 85675 392 139 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00803 NR:ns ## KEGG: LCRIS_00803 # Name: not_defined # Def: dolichyl-phosphate beta-D-mannosyltransferase # Organism: L.crispatus # Pathway: not_defined # 1 139 1 139 139 202 94.0 2e-51 MEKIKTAIYSEDFVQLVKYVLIGVLGLVVDFGIYTILTHFKMNVEIANIISSTCGIINNF LWNSYTNFKVHDRMILRFISYFIVGQITTVFTTVSLFIFVTKLGYPHLIVKIVATFVATL IQFVINKVVTFRKAKKEEI >gi|227863065|gb|ACKR01000025.1| GENE 92 85675 - 86604 795 309 aa, chain + ## HITS:1 COG:SP1606 KEGG:ns NR:ns ## COG: SP1606 COG0463 # Protein_GI_number: 15901446 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 4 308 2 305 320 336 54.0 4e-92 MEKLSIVVPCFNEQETIPLFYPAVQKVLAKMPKVTPEYWFVDDGSNDNTLTELKKLHEQD KHVHYISFSRNFGKESAIYAGLSAATGDYIVLMDVDLQDPPSLLPKMYKILQTGDYDAVG CRRVDRKGEGKFKSFLSNQFYKVINRISKVEIVSGVRDYRMMTRQMVNAVLSMKEYSRFS KGIFAWVGFKTKYLEYHNVERVAGETDWTTHKLFKYALGGIADFSQAPLNLAVWIGTTSF ILSIIGLIFVIVRKLIVPGSSILGWASTISIILLIGGLQLLCIGIIGRYIGKIYLQVKER PIYIVKEEK >gi|227863065|gb|ACKR01000025.1| GENE 93 86752 - 87264 356 170 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00805 NR:ns ## KEGG: LCRIS_00805 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 170 1 170 170 339 100.0 2e-92 MKNTHTSRFMKSNTKVILYHGSNQAVYQPRINKNVFTTDFGNGFYVTANRRQAEKWAKRK ARYSGQPTLNRYVFDADQPDLKILVYQADIDWIKFVIQNRMNNIKDNSDIVIGPTADGKL FSVVNCWKHGNLDLDEALLKLKPSVYSEQYCFKTERALKALTFIDKELVR >gi|227863065|gb|ACKR01000025.1| GENE 94 87261 - 87536 343 91 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00806 NR:ns ## KEGG: LCRIS_00806 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 91 1 91 91 164 100.0 8e-40 MIPEISEKQFHQQLAEAISDLIAKRLNIYPKQALNLFEKSRVYKDLMNSDDEFDQMMPAD FFDLWQNERLVGVPVSSADIANGLLKDKKYK >gi|227863065|gb|ACKR01000025.1| GENE 95 87570 - 87776 270 68 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00807 NR:ns ## KEGG: LCRIS_00807 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 68 1 68 68 85 97.0 6e-16 MDYEEKILEREQDAREEGKEEGLKRGVKILVSSLKRTGNTKQEIMHLLEQNYGSDFTDEQ LENFLKES >gi|227863065|gb|ACKR01000025.1| GENE 96 87982 - 90597 2951 871 aa, chain + ## HITS:1 COG:FN1022 KEGG:ns NR:ns ## COG: FN1022 COG0474 # Protein_GI_number: 19704357 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Fusobacterium nucleatum # 1 870 1 860 862 832 53.0 0 MEYYRQKKDEIAKELNTDLKQGLSAKEAQEKLAQVGPNALVEGKKKITFQVFLEQFKDLM VIILIIAAIISAFTGSLESTLVIIVVLILNAILGTVQHVKAEKSLESLKSLSAPTAKVLR NGQKMEIEAKDLVPGDILLLEAGDLVTADGRILENYSLQVNESSLTGESTNVDKLDTDFE KEVPLADRVNMVYSSSLVTYGRATVVVTATGMQTEIGKIASLMNETKERRTPLQVSLDQF SSRLATAILILCAVIFGIQMWRGQPLLDSLLFAVALAVAAIPEALSSIVTIVQAMGTQKM AKENAIIKNLAAVESLGSVSVICSDKTGTLTQNKMTVEDIYIGGKVLKPNELDLSNQLHR YLLYDVVLNNDASLAEDKAIGDPTESALLEMYRQVPGIDLGNGVLGLSEQELREHSKRLE EVPFDSDRKLMSTKHLIHTVPTIFVKGAIDVLLKRCVNIRFGDEIRPMTEEDRKEILAQN NYFSENGLRVLAFAYKESDEELSTEAEDGLTFIGLVSEMDPPREESVAAVARAKEAGIRT VMITGDHKVTAVAIAKKIGIFNEGDMALTGLELDALSDEELDQNIEKISVYARVSPENKI RIVNAWQRKDRIVSMTGDGVNDAPALKKADVGVAMGITGTEVSKDAASMILADDNFATII KAVANGRTVYENIKNAIGYLLSGNLSAIITVLFASLAGLPVPFVAVQLLFINLVTDSLPA LAIGMEPGDPDILKRKPRDPKAGILDKAFVSQITIQGLLISISVIAAFLIGLKDSPAVAT TMAFSTLTFARLLHGFNCRSQHSIFKIGFKNNWYSLAAFAVGTILLALILFVPALHSLFA VTPLTGQEVMWLAGLALIPTILIQAVKMIRK >gi|227863065|gb|ACKR01000025.1| GENE 97 90730 - 91938 960 402 aa, chain + ## HITS:1 COG:no KEGG:LAF_0101 NR:ns ## KEGG: LAF_0101 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 1 398 2 400 402 441 59.0 1e-122 MNKNKLYFLKLEIQDHPLFEDDLEFSLVSDARVTSNTSDRLTHLLGSLWVNNLITLVGTN ATGKTTIMKLLIGILQTVVMEKSIDQTKLTDVLIGNEPISVTTYFYGTDHVVYKDSLVFK LKKTLSKSWHIESETVYRKKVTVNLSKKKLFDFKNIKPELDRKELGDLASSILSSDDSIF RAIISKNKYYPQIPFDTLFFTDFNALMYGSGNVPGEILNFLDPTIEYLKIENKPEGSGAT KQLFKLKFKGKDTEIAENDFTTIAKYLSSGTAKGITLYGEVINALSVGGIIFIDELENHF NHAIVDSFIEYFTNPKININRATLVFSTHYTEILDKIERTDEEYITKREGKIQLQRYSTA DVRSDLNKADVFESDYLGGTAPDYDAYMALKKATEKAVKMDE >gi|227863065|gb|ACKR01000025.1| GENE 98 91931 - 92467 402 178 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877307|ref|ZP_03995380.1| ## NR: gi|227877307|ref|ZP_03995380.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 178 1 178 178 302 100.0 7e-81 MSNSTDLIAIIVEGHTERAIMEVLLEHDALKFNEDDLLEGEVIRARNAKKFAKEFLNKGF RSRKVKIYRILDSKTEKFNLPEVYKKKVSEVVELRTRPEIEILDILYHQDYQRYTNNYKS KVKPSDFVKQYYNDLKSVKSYDENYYFWNSHYDDLINVLKQYKQYHSSEKCIADLLKE >gi|227863065|gb|ACKR01000025.1| GENE 99 92783 - 95422 3052 879 aa, chain + ## HITS:1 COG:SA1488 KEGG:ns NR:ns ## COG: SA1488 COG0525 # Protein_GI_number: 15927242 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 3 876 2 875 876 1163 61.0 0 MTDLAPKYNPNEVEKGRYQTWLDEDLFKPSGNKKAHPYSIVIPPPNVTGKLHLGHAWDTA IQDTLIRFKRMQGYDTLYLPGMDHAGIATQAKVEAKLRKQGKDRHQMGREAFVKQVWDWK DEYASIIKGQWAKMGLSLDYSRERFTLDKGLSKAVKKVFVQLYNEGLIYRGEYIINWDPA LQTALSDIEVIHKDDKGAFYHIKYPFADGSGYVEIATTRPETMFGDTAVAVAPGDKRYKD IVGKELILPLVGRHIPIIEDQHVDPEFGTGLVKITPAHDPNDFQVGNRHNLERINVMNDD GTMNEEAGKYAGMDRFECREALVKDLKEEGYLIKIEPIVHSVGHSERSGVQVEPRLSKQW FVKMKPLADKVLENQKTDGKVNFVPERFEQTLDHWMEDVHDWCISRQLWWGHRIPAWYNK KTGETYVGEETPKDIENWEQDPDVLDTWFSSALWPFSTLGWPDTNAEDFKRYFPTNALVT GYDIIFFWVSRMMFQSLHFTGKRPFNDVVLHGLMRDEQGRKMSKSLGNGVDPMDVVDKYG ADALRWFLLNGTAPGQDTRYDPKKLSAAWNFINKIWNASRFVIMNLPADAKPAHMPDASK FDLSDRWIFDRLNHTVSEVTRLFDEYQFGEAGREAYNFIWNDFCDWYIEISKVALNGDDE ELKARKQENLIWILDQILRLLHPIMPFVTEKLWLSMPHEGKSVMVAEYPTTHKEFENKQA DQDMAFLIETIKVVRNIRMEVNAPMSSQIDIMIQLDDEANKRVLDENADYVENFLHPKEL TVASEVEAPKLAKTAVIPGAQIFVPLTELVNVDDELEKMEKEEKRLEDEVARCEKKLANK GFVGHAPEAVVNKEKEKKADYESQLAGVRERIQDLKESK >gi|227863065|gb|ACKR01000025.1| GENE 100 95423 - 96706 1005 427 aa, chain + ## HITS:1 COG:L0177 KEGG:ns NR:ns ## COG: L0177 COG0285 # Protein_GI_number: 15673139 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Lactococcus lactis # 7 413 4 419 427 216 32.0 9e-56 MKFTKAQEVIDYLYALPHLHPKNNLSFIKRLLLELGNPQDLVKTIHITGTNGKGSTSYYL SNLLKKAGQKTGLFVSPYVYEFNERIQLNNQNISDQDLVKTANIVQGTYEKLQQQDSTFS LVTFEYEVALAFVYFAQKKCDYAVIEVGIGGEHDKTNVIMPEVSVITTIGLDHEKIIGPT IQDIAREKSGIIKAKRPVVLGNVPEVVWPILKSKAEEEHAIVYQLGRDFSVLLDNQIVYQ DHKRKLVFALRPQVEAYDIAVACQAFFLLKLPLSNEEVETAINQTIIPGRYQILRENPLI ILDGAHNIQAMSNLLAVVHRMTQQKHGKLYALVTMMKDKDLEQVFSLFDDKDEVLLTTLS YPRVAKKDDFPIDVQKRYNYEKDYRAAFTQLRDHLGANDILIVSGSFYLVSAILNWKGKR DARTRAR >gi|227863065|gb|ACKR01000025.1| GENE 101 96684 - 97361 708 225 aa, chain + ## HITS:1 COG:CC2096 KEGG:ns NR:ns ## COG: CC2096 COG0637 # Protein_GI_number: 16126335 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Caulobacter vibrioides # 10 204 7 196 221 104 32.0 1e-22 MRVQGLDDDIQGIIFDMDGLLVNSEKLYWDANIQAAEEENLGTPRDAYLKLTGATVKEMQ DFYHKYFKTEADRDRFIKRTDDLVWQWTDEGKLKLQPGVQEALDEFEKRGLKMAIASSNY ENVVQHAMWVTGIRNYFDFHLSYLDVQRGHIKAKPAPDIYLEAAKKMNLPKENILVFEDS STGVQAAANAGLKCVMVPDLKAPSVKDKQNATMICQNFFEFLKKI >gi|227863065|gb|ACKR01000025.1| GENE 102 97397 - 98029 431 210 aa, chain + ## HITS:1 COG:MA1979 KEGG:ns NR:ns ## COG: MA1979 COG2003 # Protein_GI_number: 20090827 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Methanosarcina acetivorans str.C2A # 80 204 103 225 229 105 39.0 6e-23 MLKRKPNHYFVKTDLELLTQLFEQLENKGIHTLQDLNVFLKNTGLNSFNDLLKFITSSEC SDELAITAEAVLDRLRCASPKRKTILTSSIEVGTYLADKLIGHKQEELWALYIDNSNHII AEKKLFQGTLNRSIAHPREIFRWAVIYGCSGIFIAHNHPSGKLTPSASDLELTESLRQAA KMMKIDFLDHFIVGEGQYLSLREKNCFKVL >gi|227863065|gb|ACKR01000025.1| GENE 103 98115 - 99119 1226 334 aa, chain + ## HITS:1 COG:lin1583 KEGG:ns NR:ns ## COG: lin1583 COG1077 # Protein_GI_number: 16800651 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Listeria innocua # 1 333 1 335 337 407 67.0 1e-113 MFGLGTKNIGIDLGTANTLVYMEGKGIVLREPSVVAKNTQTGEVIAVGSEAKEMIGRTPG SIVAIRPMKDGVIADYDTTAAMLKYFMEKTVGNSKPSVMVCVPSGVTEVEKRAVIDAARV AGAREAFVIEEPFAAAIGAGLPVMDPTGSMVVDIGGGTTDVATISLGGIVSSTSIRQAGD KFNNAIVNYVHSNFNLLIGERTAEDIKIQIGSASVEKAKEIESMNIRGRDLVTGLPKSVD IEAVDVAKAIQDVVQDIIVAIKETLEQTSPEIAADVIDHGIVLTGGGALLKNLPEVISEA TKVPVFIAQDPLDCVAIGTGESLKNIEVMRRSRK >gi|227863065|gb|ACKR01000025.1| GENE 104 99165 - 100016 696 283 aa, chain + ## HITS:1 COG:lin1582 KEGG:ns NR:ns ## COG: lin1582 COG1792 # Protein_GI_number: 16800650 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Listeria innocua # 1 279 1 275 295 161 40.0 1e-39 MKKFLQNKKLLSAFIIVVVILSVLGGSVSLRNRRNTPLLIQSLGNDVVALGTRIVDVPVG LVSGGLNSVHDILNTQEENNHLKREVTNLGQTKARNSALEKENRQLKSALKLKDTLSGYT MVNASVISRSPDTWSDLLVINKGSSAGIKKNMAVMCDGGVIGRIVEANAASSKVELLTTT DESANRFSVQADAANGKTVHGIITVTSNNYLAFTQVVDGRKLKAGTRVYTSGMGGNSPKG LLIGTVTTTTRDSFGLSDQIRIKPAGDISDPSVVTVIERQVAN >gi|227863065|gb|ACKR01000025.1| GENE 105 100016 - 100555 490 179 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00819 NR:ns ## KEGG: LCRIS_00819 # Name: mreD # Def: rod shape-determining protein MreD # Organism: L.crispatus # Pathway: not_defined # 1 179 1 179 179 288 99.0 7e-77 MSTFRKWVLAIGLFIALVVDGVCALYLHQFMTYDNFAASSVILPISVMLIGLFDDTNDNE IWLALGAGIVADIYFYGIIGVYTVFLPASCWICQKTARFLPEMLWARLIVVLLGTAVFVA YSWLIFNMVGISAASAHVLLMSILVSLGWAVVFFFLLYWIWGNLAQDYPFLIDLNAYRV >gi|227863065|gb|ACKR01000025.1| GENE 106 100597 - 100722 87 41 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MARKKKKKSGFQKLTIAMAWIMAIITLAAVIAQAAISLQSF >gi|227863065|gb|ACKR01000025.1| GENE 107 100816 - 101145 246 109 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00820 NR:ns ## KEGG: LCRIS_00820 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 109 1 109 109 174 100.0 8e-43 MLYIFLIPIIGLVVAFFINKIFPKAQFRGYDVMPFFFLSACGLITLHMNKPSFLPYGFLC YFVLVIVVSLNDAIRNKNISLGKTVRKLWDYLTACTVFWYIGLLLMLVL >gi|227863065|gb|ACKR01000025.1| GENE 108 101316 - 101747 355 143 aa, chain + ## HITS:1 COG:BS_yllB KEGG:ns NR:ns ## COG: BS_yllB COG2001 # Protein_GI_number: 16078577 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 138 1 138 143 177 56.0 8e-45 MFMGEYHHNLDSKGRLIIPAKLRDQIGDKMIFTRGMEGCIFGYSMEEWSKIEAKLAKLPL TKRNTRKFMRLFYSGAMECEFDKQGRVNLTTTLKMHAKLIKECVIIGVSDRIEIWSKERW TSFEEEANEDYDDIAENLDDIEL >gi|227863065|gb|ACKR01000025.1| GENE 109 101753 - 102700 589 315 aa, chain + ## HITS:1 COG:SA1022 KEGG:ns NR:ns ## COG: SA1022 COG0275 # Protein_GI_number: 15926762 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Staphylococcus aureus N315 # 3 315 2 310 311 323 53.0 3e-88 MKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIDTGTLVGFDQDEYAIKS AKLNFANLLQLDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRG FSYRYDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREK PIATTFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPG GRISVITFQSHEDKIVKRIFKKYSEVEVPRGMPFIPDGMKPTLRLVNHKPIVASTSELEN NNRSHSAKLRVAEKL >gi|227863065|gb|ACKR01000025.1| GENE 110 102714 - 103076 420 120 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00823 NR:ns ## KEGG: LCRIS_00823 # Name: ftsL # Def: cell division protein FtsL # Organism: L.crispatus # Pathway: not_defined # 1 120 1 120 120 184 100.0 1e-45 MADSSARKIEYEPSSRNGSQRRQRIILDPRKVPYSGIEKALMIIGSVITLGMMIFLVSSS ISATSAQHELTRTQQTVAKEQNKITDLRQEIGELTSTSRLNKIAREKGLTLINKNIRTIR >gi|227863065|gb|ACKR01000025.1| GENE 111 103154 - 105235 1776 693 aa, chain + ## HITS:1 COG:lin2145 KEGG:ns NR:ns ## COG: lin2145 COG0768 # Protein_GI_number: 16801211 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 5 691 21 713 752 455 39.0 1e-127 MAVALVFLVFTARFLYIGISKTVNGQNLSQRTKQLYKRNQVIKATRGTIYDRNGLTIAED SHLYTVYAILDKTSINYKNKPEYVVNKTKTAEKLAQVLPLSAEKIYQYLTPKKKVFQVQL GTGGSGLTLRQKKKIEAMKLPGIKFLETPSRLYPNGVFASHTVGLAQPIWNKKTNAQNLV GTMGIEAYFNKTLTGTDGYRISSVDASEYQLPNSNQVYKPAKNGNNLYLTLDSQLQSLLE TRLSEVQKTYRPTSITATVEDMKTGKILATSQRPTFNPQTMKGLTKSYRDILVQDTYEPG SVFKILSFAAVVNSGNYNPNEYYRSGSVNIAGSTIHDWLTSGWGTIPFSQAFERSSNTGF VKLEQKMGAKTWKKYLRKFRIGEKTGVSLPGEQPGMISFKTPVDQAITAFGQGVTVNVMQ MMQAYSSLANNGQMVKPQLVNKITDSDGNTIQGYQIKKVGTPVYSAKTRKVIVANMRKVL NKQSGTGSAYKMGNADIAVKTGTAQIANPKGGGYLKGDSNYIFSVVGIYPASKPRYCIYL TIKQPHLIGGGAEKILASIFKPMMQRIISIAKNDDVSTTVKVPNLKAKTVAQAESQTKQL GLNLVKIGSGDRISNQGVKSGEKLESGSKIFVNTSGKIICPDMTGWTYSDLHQFASLTDI KLSIKGTGTVASQSVAKGTELKAGRKLNIKLKE >gi|227863065|gb|ACKR01000025.1| GENE 112 105242 - 106210 1154 322 aa, chain + ## HITS:1 COG:lin2143 KEGG:ns NR:ns ## COG: lin2143 COG0472 # Protein_GI_number: 16801209 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Listeria innocua # 4 320 5 321 324 284 52.0 2e-76 MNMMLASCIALVSSLVLTVIFIPLLIKFMRSHHEGQEIRDEGPKWHQKKSGTPTMGGTVF VIAAVISVIWVAAMQHSLNKVVWILVISLLGYGIIGFLDDGIKLYFKRNLGLRAWQKLAL QIIIAILIVLIATSDHFQFGLYIPFAGVVHSLVLFVAFIIFWLVGFSNAVNLSDGLDGLA TGLSVVAYGTYAYIAFKQKNFAVLAFCMSVIGGLIAFFIFNHKPAKIFMGDAGSLALGGG LATISIMLNRPWSLLLVGIVFVCETASVILQVISFQTTGKRIFKMTPIHHHFEMLGWSEW KVDIVFWLVGLIGSILYLVIWG >gi|227863065|gb|ACKR01000025.1| GENE 113 106218 - 107597 1669 459 aa, chain + ## HITS:1 COG:BH2567 KEGG:ns NR:ns ## COG: BH2567 COG0771 # Protein_GI_number: 15615130 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Bacillus halodurans # 1 457 1 449 450 375 45.0 1e-104 MKDIKTYNNKNILVLGLGKSGFAVSELLLQLGANLTLNDKADLEKNAKAQELKSRGVRVI GGHHPVDLLEKEHFDYLVKNPGIPYENPMVQKAEELNIPIITEPEVALSCSDAPYVCVTG SNGKTTTVMLTQRILDHHLQKSGHHAYAVGNIGVPISEVVPKATKDDILVVEISSFQLLG VTDIDPKVAAIVDIYNNVHLDYHKTFENYVNAKLNVTRTQNSNDYFIANYDQKDILAKEK EVSPAKMQTFSETDHNADYFIGDEYLESQNEKIMKISDIKLPGIHNLQNSLVAIAISKIM GADNDDIAAVLSTFTGAKHRLQYVTTLDGCKVYNDSKSTNIEAATVAIPSFKQPEVLIAG GLDRGFTFDDLVPLFKKHVKSIVLYGETRYLLADAARKAGIKDIVIVNTLQEAVPRAWEL VEPGDVLLFSPACASWDQFRTFEERGDYFVRFVEELKTK >gi|227863065|gb|ACKR01000025.1| GENE 114 107599 - 108705 1110 368 aa, chain + ## HITS:1 COG:BH2565 KEGG:ns NR:ns ## COG: BH2565 COG0707 # Protein_GI_number: 15615128 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus halodurans # 1 368 1 363 363 336 46.0 3e-92 MRVIFTGGGTGGHIYPIMAIIERLKERGISKNDEILFVGTQKGLESKIVPAAGVNFKTIK IQGFNRKHPLKNFETIKLFLQATKSARQILRDFKPDVILGTGGYVSGAMVYEAAKMHIPT MIHESNSVVGLANKFLGHYVDKICYTFDDAAKEFSEKKKLVKTGNPRSQQVLSLHEEKID LEKTWGLNPKMPTVLVFGGSRGALAINRIMLKSLMTLKQKPYQIIWATGTFYFDKVQEKI KNVDIGNNIKVLPYIKNMPGLLPEMTCVVSRSGATSIAEFTALGVPVILIPSPNVTHNHQ MKNALDLEKAGAALVIPEDDLNPNNFVSSIDHILLDEKYATEMSKASKALGVPDASDQVI KVMEEISR >gi|227863065|gb|ACKR01000025.1| GENE 115 108722 - 109579 564 285 aa, chain + ## HITS:1 COG:BS_divIB KEGG:ns NR:ns ## COG: BS_divIB COG1589 # Protein_GI_number: 16078588 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Bacillus subtilis # 30 281 7 257 263 77 24.0 3e-14 MAKKPVTKIDPRKELSPYLNHEFNQQRNSRKSQTKISASLSNLQAERRRSLRRRLGLIMT VSVLAIAGLGYYISPLANISTVKIIGAEHLPAKEIVKVSKIKASDKVFDYLFQQKDLSQR LSQKYPEIQSAQVHLGHINQLILQINERKTVGYLKDGYSYRKILDNGKIGTRALPWTKVN QDKPIFVGYNKSDELKNDLKLFNSLPNSFKNQVKLLSGNTRRNSQIILVMKDGNVVIGNT ATLNSKLKYYDTIRIKAGKHSLIDLEIGAFSRPLTSSEKKAYGIS >gi|227863065|gb|ACKR01000025.1| GENE 116 109663 - 111003 1295 446 aa, chain + ## HITS:1 COG:SP1667 KEGG:ns NR:ns ## COG: SP1667 COG0849 # Protein_GI_number: 15901502 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Streptococcus pneumoniae TIGR4 # 2 376 9 386 457 265 38.0 1e-70 MGLDIGTTSVKAVVADSGKVIGAVTTPNSGMRHGQIVDIDQTASAISRALKGVAEKTNAK IYSVVTGIPVGMLQLETATGFANVGEQGQEVNNDDVKRTIRSAIHSAAKDDREAITFLPS RFLIDGKTEVDDPRKMIARSLGVSGILLTAPTSPLHNIKKAIERAGYHNNFFVPTPLAIS SVALNESEKTFGSVIIDLGGGVSTATVIKDGQIKYANIDLEGGSDITNDISAVLSISKKD AEQIKLDYGFADPQFASKNDKFAINSVGANSQQMVDEVYLSEIINARLEQILTRLGKGLV KHNALKQPGGIVITGGSSLLQGIDSLTANGLNVKARIYEPDQIGMRNPIYTAAYGIVHYS YKMSEVDYLVNGVIYGFGEPAVEDPVSQPKSTKISKSTTSNSESEAKEAYNRSKMSARTE SVPDDENNTKQEKTNSLKSFFKKFFD >gi|227863065|gb|ACKR01000025.1| GENE 117 111018 - 112361 1709 447 aa, chain + ## HITS:1 COG:L0208 KEGG:ns NR:ns ## COG: L0208 COG0206 # Protein_GI_number: 15673851 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Lactococcus lactis # 1 369 1 365 417 361 63.0 1e-99 MDFTFDSDDNKNAVIKVIGVGGAGGNAVNRMIDDGVQGVSFIAANTDVQALNSNKAENKI QLGPKLTRGLGAGSHPEVGQKAAEESEQTIEDALKGADMIFITAGMGGGTGTGAAPVVAK IARETGALTVGVVTRPFSFEGPKRSKNAAEGITQLKQYVDTLVIIANNRLLEMVDKKTPM MDAFKEADNVLKQGVQGISDLITSTDYVNLDFADVKTVMENQGAALMGIGRASGENRTVE ATKLAISSPLLEVSIDGAKQVLLNITGGPDLTLFEAQDASEIVSKAAGDDVNIIFGTSIN PNLGDEVVVTVIATGIDSKAEEAASKQLPGRSQQIKAQPVKEKEEAPKAEEPKQPVDRPQ TVQPAAEKQEPEQPKQTMVDPTSVWGLNDSEDNQRRNTQPTEPKKDYEGFDTFSDEDQDS ISQIETSAQDDSDDNSDIPFFKHRSEN >gi|227863065|gb|ACKR01000025.1| GENE 118 112379 - 112816 450 145 aa, chain + ## HITS:1 COG:BS_ylmF KEGG:ns NR:ns ## COG: BS_ylmF COG1799 # Protein_GI_number: 16078603 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 4 143 3 146 149 95 40.0 3e-20 MAFDKLGRFFGISNDDELENDEEYASQTKNENEDLPLNSVNRDNVVSIKSGLNSAKSKIV LYEPRVYSDAKDVAQNLLNNKAVVINFSRMEDSSARRIVDFITGTVYALNGEIQRIGDKI FLATPPKFVTDGKISDLVDKKDNLS >gi|227863065|gb|ACKR01000025.1| GENE 119 112816 - 113118 209 100 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00832 NR:ns ## KEGG: LCRIS_00832 # Name: yggT # Def: cell division membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 100 1 100 100 138 100.0 6e-32 MVNILNLIYLALTWILWLYSLLIVIDAIMSWLPMLSNSVVGRFLDKVVNPYLNLFRKGPF ARLAYSTGIDVSPIIALFILYFIQNYVLRWIFDILLRMMV >gi|227863065|gb|ACKR01000025.1| GENE 120 113118 - 113918 1379 266 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227877329|ref|ZP_03995402.1| ribosomal protein S4e [Lactobacillus crispatus JV-V01] # 1 266 1 266 266 535 100 1e-151 MERRQASKFYPHFNQEERPVIDYFTGLFNQLIFKHEPILTDFLDPGKRAILRTIVGNDAF VQEYGGYPNAEKKRVYLSEEWLNLRPSDYQIQPYEIEYPQKFTKINYSVILGTLANSGID TSIFGDIINDNQGKWQFFTKKEITEFFEEQIDRIGRAKVKLRPISFKEVLVPEDDSIEKT KIVASMRIDAVLSGISRQSRGQIQKMINSQLVKLNWHEIADSNIMIKEDDVLSLRHFGRI LIEDVSTTRKGKYKVVLRLWQTKKHN >gi|227863065|gb|ACKR01000025.1| GENE 121 113924 - 114718 912 264 aa, chain + ## HITS:1 COG:lin2128 KEGG:ns NR:ns ## COG: lin2128 COG3599 # Protein_GI_number: 16801194 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Listeria innocua # 1 162 6 152 175 69 32.0 8e-12 MDIHNKEFKRRGRNGYDRLEVDSFLDQIVDDYGDTLDQVVDLKNEVVSLNKKLTDLQEKV DDYQDQVNEYNEKKRSLNKSLISAQQTADEIREKAEAEAKQIIADAKKQAEDNINFQKHQ QDTISTDYMRVKEQVSEFRSNIQEMLQTEIDNLNDEKWQHALDDYFNLERYYPDDGSEPV SADDEDVEDEDVDNDDENDVNSSQGPDDLELDQPDDSDDADNEENAAPKPMTGDSPSHET INVKPEMKSDPLGPTIVFPDDYKK >gi|227863065|gb|ACKR01000025.1| GENE 122 114946 - 117747 3450 933 aa, chain + ## HITS:1 COG:L0350 KEGG:ns NR:ns ## COG: L0350 COG0060 # Protein_GI_number: 15673845 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Lactococcus lactis # 1 933 1 932 932 1197 61.0 0 MRIKDTLNLGKTKFKMRGNLPVREAEWQKEWEDNKLYEQRLKLNEGKPRFDLHDGPPFAN GNIHMGHALNKISKDIIVRYKNMNGYYAPYVPGWDTHGLPVEQQLAKQGVDRKTMDRAKY RELCRQYAEEQVQKQMADFKRLGVMADWDNPYITLQHDFEAQEIRVFGEMYKKGYIYKGL KPVYWSWSSESTLAEAEVEYHDIKSPRIYVAFPIKDGKGILDSDVSLVIWTTTPWTIPSN VGITVNPRFDYSLVEVDGKKYVIGSDRLPAIAEDLGWKDYKVLKQLKGTDFDGMTYKHPL YGKTGVGQYGLVMNDTYVTDDDGTGLVHNATGFGEDDYRVGQKYGIPVFSPMDAQGRFTK DIPDPDLVGMFYDDANKVVADKLKKAGALLKLSFFTHSYPHDWRTKKPVVFRATTQWFAS ISKFRDQILDQIEQANFIPSWGKTRLYNMIKDRGDWVISRQRAWGVPLPIFYAEDGTPIV TPETIDHIAKIFEKEGSNAWYTHTAKELLPEGFTSEHSPNGEFTKEKDILDVWFDSGSSW SGVMEKRDGLHYPADLYLEGSDQYRGWFNSSLITSVAVTGKAPYKEVLSQGFVLDDKGHK MSKSLGNVISPNDVIKKMGAEIIRLWVAQADTTSDVAVSMGILQQSAESYRKIRNTFRYM LANTSDFDPKENRVAYADLRSVDQYMEVKLNDLVKDCLAAYDKFDFTTVFKKVFNFVSND LSAFYLDFAKDVLYIDGENSHDRRSMQTVIYDAAVKLAKILTPILPHTMEEIWGFLKEPE DYVQLANMPEVEEYANHDDLLENWGKFMKLRDDVLKALEDARNKKLIGKSFEATVTIYPD KETKAMLQDLDADFRQILIVSKLTIADGEAPDNAKQLNNASVVVEHAEGEVCPRCRMIRT DIGVDPKLPMLCGRCAKIVEADYPEAVQEGFEN >gi|227863065|gb|ACKR01000025.1| GENE 123 117747 - 117950 269 67 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00836 NR:ns ## KEGG: LCRIS_00836 # Name: cspA # Def: cold shock protein # Organism: L.crispatus # Pathway: not_defined # 1 67 1 67 67 119 98.0 4e-26 MRLGTVKQFDEGSSYGFIEDDRNHKSYFVFYKAIKEEGYKTLQIGQRVKYQLAQGKNGLQ CVNVYLA >gi|227863065|gb|ACKR01000025.1| GENE 124 117966 - 118535 528 189 aa, chain + ## HITS:1 COG:BS_yqkG KEGG:ns NR:ns ## COG: BS_yqkG COG0494 # Protein_GI_number: 16079418 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Bacillus subtilis # 3 172 4 172 185 133 41.0 2e-31 MDLKETEISSQQIFQGRILDLAVRTIKLPNGEIATREVIKHKPASAVIAINDEQKMLLVK QWREPIKQITLEIPAGLVDSTDASPLDAMKRELNEEGGYRTDYWEKVSEFYSSPGFCDEK MYLFYCDTLTKLTDKRALDADEFLTSSWYSLDELKTLLAEGKIVDAKTIYAITVWENMML RNAQTDNKD >gi|227863065|gb|ACKR01000025.1| GENE 125 118538 - 118852 195 104 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00838 NR:ns ## KEGG: LCRIS_00838 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 104 1 104 104 115 98.0 4e-25 MVEKRSDYRKRQKKSLLNKLKSSFSDNDSEEVDVNPDFKRDDSEEEPRRRPLAGDGQEFY QHNQSSDKETIRQEKSLRLKKRLNRAILIVIVLIILVLLALFHL >gi|227863065|gb|ACKR01000025.1| GENE 126 118871 - 119566 791 231 aa, chain + ## HITS:1 COG:HI1216 KEGG:ns NR:ns ## COG: HI1216 COG0775 # Protein_GI_number: 16273135 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Haemophilus influenzae # 1 230 1 229 229 140 35.0 1e-33 MKIAIIVPMAEEAEFYRDHFHAETKEMFGSTEFEHFSVNGNDVYLGLSGIGKVNAAMNLT SLLTKEKIDVIFMTGSAGSLQDDVHRKDVILVNDFAYHDAHCVSAGEYVEGQIPREPATF KLNSPEREAFKKYLGEEDVDFKEGLVVTGDTFVQSEEQKELIKKNFPEALGVEMEGAAFA QVARHFKTPLVAMRAISDNGDANADNDFDKFVKEVGAKAAKLISDYVEKMN >gi|227863065|gb|ACKR01000025.1| GENE 127 119608 - 120726 1113 372 aa, chain + ## HITS:1 COG:BS_yrvO KEGG:ns NR:ns ## COG: BS_yrvO COG1104 # Protein_GI_number: 16079805 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Bacillus subtilis # 1 333 14 344 346 333 51.0 3e-91 MSPKVIDIITDEMKNDFGNASSTYELGRRARNVIDRARHQIAQDINAQDGEIIFTSGGSE SNNTAILGTAYARKNIGKKIITTPIEHPSVLNPMKRLENEGYNIVYLNVDENGQISLEQL KKELTPDTILVSIMAVNNEVGTIMPLKEIGAMVKDSNAYFHVDNVQGMGTIKIDVKDMNI DFLSVSAHKINGPKFLGFLYENADIDIPNLILGGEQETKRRAGTENVPGIAGFGEAVREV SEIGRDALQKKYAHYQDIILKELDDHQINYEINGGYGPGYSHHVLNLHLNGVSTTSLQTN LDLNGFAVSGGSACTAGSLEPSHVLIACFGENSPRINESIRISFGRYNTDEEIEQFAQEL VKIVQRIQSKNK >gi|227863065|gb|ACKR01000025.1| GENE 128 120774 - 121115 494 113 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00841 NR:ns ## KEGG: LCRIS_00841 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 113 1 113 113 196 99.0 2e-49 MANTVVINGDKRKFTLNLELKLYALIDAGFVKTAKGNFNYEHPLYNDSPYNAPTKLKMTI NKDLSHLTMVITDRNGLQKVNIFKNKQLAPTVELLDYILKDLEERKILLEVKD >gi|227863065|gb|ACKR01000025.1| GENE 129 121123 - 122250 1366 375 aa, chain + ## HITS:1 COG:L52034 KEGG:ns NR:ns ## COG: L52034 COG0482 # Protein_GI_number: 15672819 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Lactococcus lactis # 5 373 15 382 384 497 67.0 1e-140 MVDNSKTRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDSGVCTATEDYEDVK KVADKIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAMDLD ADYIAMGHYAKTVKDTNGVTHMMRPKDGNKDQTYFLSQLSQEQISKVIFPLANLTKPQVR EIALANGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPDGKVVGEHAGLMYYT IGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLNASDMSFFTGKPD HDFEMHCTAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVLYKGEECLGGG NIDAAYQEEKQLQLV Prediction of potential genes in microbial genomes Time: Wed May 25 06:11:42 2011 Seq name: gi|227863057|gb|ACKR01000026.1| Lactobacillus crispatus JV-V01 contig00027, whole genome shotgun sequence Length of sequence - 8550 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 3, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 2 - 61 3.0 1 1 Op 1 . + CDS 86 - 745 777 ## COG0406 Fructose-2,6-bisphosphatase 2 1 Op 2 . + CDS 745 - 1395 643 ## LCRIS_00844 TPR repeat protein 3 1 Op 3 . + CDS 1388 - 3757 2612 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Term 3766 - 3805 1.1 + Prom 3769 - 3828 7.9 4 2 Tu 1 . + CDS 3864 - 5501 968 ## LCRIS_00846 hypothetical protein + Term 5506 - 5539 -0.9 - Term 5493 - 5526 -0.9 5 3 Op 1 . - CDS 5527 - 6474 802 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Term 6486 - 6513 0.1 6 3 Op 2 7/0.000 - CDS 6521 - 8200 1502 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 7 3 Op 3 . - CDS 8207 - 8428 316 ## COG5503 Uncharacterized conserved small protein - Prom 8488 - 8547 12.7 Predicted protein(s) >gi|227863057|gb|ACKR01000026.1| GENE 1 86 - 745 777 219 aa, chain + ## HITS:1 COG:SP0984 KEGG:ns NR:ns ## COG: SP0984 COG0406 # Protein_GI_number: 15900859 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 208 1 204 206 155 40.0 7e-38 MQIYFVRHGKTEWNLASRFQGGHGDSPLLPQSLEDIKKLGHHLQGTKFRGIFASPLDRAF NTAQGIDDAMNANLPVVIDERLREFNLGDMEGMKFGDAEKKFPKQMDNFWHHPDKYDPTE LHGEDYPHVIARGKAFAQEMAQRFPDDDDKILAVSHGAALSAIMGGLLGYPLKDIRKNGG LSNTSLTVLETLDGGKTFKPVVWNETSYLGRKLSKTDSL >gi|227863057|gb|ACKR01000026.1| GENE 2 745 - 1395 643 216 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00844 NR:ns ## KEGG: LCRIS_00844 # Name: not_defined # Def: TPR repeat protein # Organism: L.crispatus # Pathway: not_defined # 1 216 1 216 216 325 100.0 8e-88 MDQKIAQLYDEGKVEQAIHLLIKKIDQHPQQVANYLQLSTYLIEQGSLDQAQKLLEQAQH LVKEPQELNYNLAVCYYMQGDFDKALALLDQIPNDDLTLYQKALTYLKLGQGQKALAYAL TIKKIDERIQELLGDIWLSLGENQQAQQMYLAIPDNKKNAKVYFLLGVTTLEKDRDQAQK YFAQAKQMDAKYYQQAMNQYASIMKMLNDKEKKNYE >gi|227863057|gb|ACKR01000026.1| GENE 3 1388 - 3757 2612 789 aa, chain + ## HITS:1 COG:BS_yrrC KEGG:ns NR:ns ## COG: BS_yrrC COG0507 # Protein_GI_number: 16079801 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Bacillus subtilis # 6 748 18 772 798 473 37.0 1e-133 MNEFTGKVNGIVFENSKDLYKILDVEIIGTLSDYSRPDIKVTGNFGDIQINSSYRFEGKL VMHEKFGLQFRANNYKQVLPHEEGSLTKYLSSNKFPGIGKKAATTIIDELGLNALDVLKE SPAKIDKLSLTRKQKDSLLAGLNAMDSYSEVILKLAKYGINKRIAGRVYQLYHGEALAKL EKDPYAAVNDISGFAFKTADMMGSQLDIASDDPRRIKGAVYQVLLDALNGEGDTYVGLAE LLTEASKLLQINQFDPIASCINSLQEAGKVIVDGENAALQNIYQTEVDIARLMKNLVEKK EDKKREQYDDKKVEQAIKDAEKELKIHYDDTQKLAIKNAVNQPISILTGGPGTGKTTIIN GILLVLRKLAEIPSSALYSEDPPFLLAAPTGRAAKRMGEITGISAKTIHRMLGLGIGDTN TQDLNELNGEILIVDEMSMVDMFLFKQLLASIHDTRHIVFVGDKDQLPSVGAGNVFSDLI KSQAFPTTILKQIHRQGDDSTIITLAHDVNEGKDQQALFKKTNNYSFISCRPELVGDAVG QIVKLALKRGFAKDDIQVLSAMYLGNGGVTNLNNVIQAILNPSQPKSKVLEAHNEVFRIG DRILQLQNNPEKDIYNGQIGKIISIDEDDAKECMIADFDGREVAFSRKDLNDLTRAYAIT IHKSQGSEFPLVILNLTMQNFVMLKRNLLYTAITRAEKNLVLVGDPRAFVAAFKTPGNDR KTGLAAKICQQLGITKSLDKSDQSKQHEKAQEMENETDKAEVAEDFVLTSEKIYSGEIDP MIGMENIKL >gi|227863057|gb|ACKR01000026.1| GENE 4 3864 - 5501 968 545 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00846 NR:ns ## KEGG: LCRIS_00846 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 26 545 1 520 520 941 99.0 0 MDITIITLTIGLLTYYFFQKRKKKKMKKIELSVTDKKEITKIEKIAGKRLPYRFPNHKNL TFQIIELMRPGYIKRRIFDNKGHCHYLIKYYLDRSVAELVEFGETDGHYWRKTSWNGETK VTYHYGKHEFNELDEITKNLRYYGSIVKEGRNKILPLENDLNQYVNELENHASYQKAWIT HKKVTDSQTVHDAMIVEKTLLNNKRDLKRALALQNVLRIRAINSGYKVYNQKVNAFQKRM TELHLNQIKHLRPMNILSQRDLRHLSNLLAGAAAEELVNSRLREVQTGKEIIHNLLLPYP YEKKNSLGSNQIDHVIITTSGIFCLETKARTSKNGQYNVQADYDQIADQVAKHKESIKYV LEKSNNPVIINLLRRLPNIDQLIRNVVVFVSRTDDEFTLTDSNRYQKMEIDVVQLADIQS LLVKAKTGIGLQPDEIAAIKEEMDNSKQLQEEKNYQENVLFFEDQESTLTQKQVEEQLYH ANQVIKHIDQINGLLGNYLQEAREWQKQYQKYRYWKKFYDQVHDFVDQDQYYQNHNSKRD ILDKI >gi|227863057|gb|ACKR01000026.1| GENE 5 5527 - 6474 802 315 aa, chain - ## HITS:1 COG:BS_ytlR KEGG:ns NR:ns ## COG: BS_ytlR COG1597 # Protein_GI_number: 16080046 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Bacillus subtilis # 9 304 6 298 309 128 31.0 1e-29 MHKKIKVQLLVNEVAGNGNAIKADKELQDILKEMNIPFKRQKSHYPGELVVLAQNYANLH LSSEHVLIVVGGDGSFNEVLNGIKTSNYPETAITYLPAGTGNDFARGAGLTADPRQLINN LLRDPEPEQVDCGFFTSNIKQIPKGYFVNNFGIGFDAFVVHQSNHEQLKKHLNHLNSGNM IYGLNIIKALIKQDTFTVTVKTKNETLRYGDAYFVTTTNHPYFGGGFAILPKADIYSHHL DTVIVEKPSLRKFLWLFGKLIKDGSHVNAPEFHYIEAKEILVQTNKSEYAQIDGEDIEKQ PFKVTFKVDHFNLLK >gi|227863057|gb|ACKR01000026.1| GENE 6 6521 - 8200 1502 559 aa, chain - ## HITS:1 COG:lin1026 KEGG:ns NR:ns ## COG: lin1026 COG0595 # Protein_GI_number: 16800095 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Listeria innocua # 3 557 4 554 555 703 61.0 0 MRIKNNEVAVYAIGGLHEIGKNMYCVQYQDEIIIMDCGIKFPEDNLLGINYVISDYSYLI KNRKKIKALVVSHGHEDHIGGIPFLLEKIPEIPVYATPFALSLIRGKLEEHGILKTTELH EEHEDTVLKFKKLSVSFFRTTHSIPDTLGIAVHTPLGAVVFTGDFKFDLTPVMDQPAPDF QKMAQLGNEGVLALLSDSTNAEVTQFTKSERFVAKSLHNIITGIHGRIIFATFASNLYRV STAIQAAIDTGRKVAIFGRSMENGVDNGVDLGYLNLPKDLIVDVDEINKLPPEKVMILCT GSQGEPLAALSRIANGTHRQISLQPGDTVIFSSNPIPGNTLSVNHLINKLMEGGADVIHG RVNNVHTSGHGGQEELKMMVRLVKPKYMIPVHGEYRMQVIHTQLAQQAGVPAENTFVLSN GEVVCFGPDGARITGHIPAGDVYVDTSGTADVGNVVVHDRQILSEEGLVVAVATVDYKHK RVLAGPDILSRGFVYMRESTELISQAQKHVYHVLRNEMAKSNRPKESDIKKAITENLSDF LYSKTERRPMILPIIIEKK >gi|227863057|gb|ACKR01000026.1| GENE 7 8207 - 8428 316 73 aa, chain - ## HITS:1 COG:SPy1875 KEGG:ns NR:ns ## COG: SPy1875 COG5503 # Protein_GI_number: 15675694 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Streptococcus pyogenes M1 GAS # 1 70 1 76 76 58 48.0 4e-09 MIYKVLYQKDKIVNPRRETTQTLYMEADNMVEARSMVEDSTPYNIELIQELTGNSLTYEK EHADFKLTTFDKK Prediction of potential genes in microbial genomes Time: Wed May 25 06:12:05 2011 Seq name: gi|227863015|gb|ACKR01000027.1| Lactobacillus crispatus JV-V01 contig00028, whole genome shotgun sequence Length of sequence - 39953 bp Number of predicted genes - 40, with homology - 39 Number of transcription units - 20, operones - 9 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 158 - 186 1.0 1 1 Tu 1 . - CDS 209 - 754 549 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 806 - 865 5.5 + Prom 752 - 811 7.7 2 2 Tu 1 . + CDS 1016 - 2860 2458 ## COG1217 Predicted membrane GTPase involved in stress response + Term 2878 - 2927 7.4 3 3 Op 1 . + CDS 3221 - 4144 943 ## COG0772 Bacterial cell division membrane protein 4 3 Op 2 . + CDS 4141 - 4485 319 ## LCRIS_00854 hypothetical protein 5 3 Op 3 14/0.000 + CDS 4482 - 5030 349 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 6 3 Op 4 4/0.000 + CDS 5033 - 5518 293 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 7 3 Op 5 . + CDS 5511 - 6554 376 ## PROTEIN SUPPORTED gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 + Term 6572 - 6609 3.2 8 4 Op 1 4/0.000 + CDS 6629 - 7318 674 ## COG1555 DNA uptake protein and related DNA-binding proteins 9 4 Op 2 4/0.000 + CDS 7395 - 9575 739 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 10 4 Op 3 . + CDS 9572 - 10558 758 ## COG1466 DNA polymerase III, delta subunit + Term 10564 - 10613 6.5 - Term 10541 - 10608 10.2 11 5 Tu 1 . - CDS 10622 - 10879 410 ## PROTEIN SUPPORTED gi|227877359|ref|ZP_03995430.1| 30S ribosomal protein S20 - Prom 10911 - 10970 5.2 + Prom 10921 - 10980 5.8 12 6 Op 1 2/0.000 + CDS 11081 - 11350 461 ## PROTEIN SUPPORTED gi|227877360|ref|ZP_03995431.1| ribosomal protein S15 + Term 11373 - 11409 4.0 + Prom 11383 - 11442 5.7 13 6 Op 2 . + CDS 11508 - 13265 1969 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 14 6 Op 3 . + CDS 13296 - 14129 606 ## LCRIS_00864 BS_ysoA-like protein with TPR repeats + Prom 14197 - 14256 3.9 15 7 Tu 1 . + CDS 14319 - 15509 1329 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 + Term 15533 - 15572 2.1 + Prom 15550 - 15609 6.9 16 8 Op 1 4/0.000 + CDS 15655 - 16986 1850 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) + Term 17014 - 17044 1.8 + Prom 17028 - 17087 6.0 17 8 Op 2 4/0.000 + CDS 17115 - 18380 279 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 18 8 Op 3 . + CDS 18370 - 18960 613 ## COG0218 Predicted GTPase + Term 18968 - 19006 3.0 + Prom 18997 - 19056 7.8 19 9 Op 1 4/0.000 + CDS 19139 - 19342 259 ## COG0531 Amino acid transporters + Term 19376 - 19419 1.1 + Prom 19451 - 19510 4.2 20 9 Op 2 . + CDS 19568 - 20584 976 ## COG0531 Amino acid transporters + Term 20602 - 20634 4.0 - Term 20590 - 20622 3.2 21 10 Op 1 . - CDS 20628 - 21632 956 ## COG0253 Diaminopimelate epimerase 22 10 Op 2 . - CDS 21641 - 22996 1085 ## COG0527 Aspartokinases - Prom 23050 - 23109 8.4 23 11 Tu 1 . - CDS 23166 - 23366 96 ## - Prom 23437 - 23496 2.0 24 12 Op 1 . + CDS 23455 - 24765 1587 ## COG0019 Diaminopimelate decarboxylase 25 12 Op 2 6/0.000 + CDS 24780 - 25487 832 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase 26 12 Op 3 . + CDS 25489 - 26643 938 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 27 12 Op 4 6/0.000 + CDS 26645 - 27571 776 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 28 12 Op 5 . + CDS 27578 - 28357 860 ## COG0289 Dihydrodipicolinate reductase 29 12 Op 6 . + CDS 28369 - 29544 1097 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 30 12 Op 7 . + CDS 29544 - 30602 1092 ## COG0136 Aspartate-semialdehyde dehydrogenase + Prom 30624 - 30683 5.4 31 13 Tu 1 . + CDS 30765 - 31808 867 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 31816 - 31859 6.2 - Term 31802 - 31845 6.2 32 14 Tu 1 . - CDS 31851 - 33461 1441 ## LCRIS_00882 triacylglycerol lipase + Prom 33705 - 33764 8.8 33 15 Tu 1 . + CDS 33795 - 34061 405 ## COG3976 Uncharacterized protein conserved in bacteria + Prom 34100 - 34159 3.8 34 16 Tu 1 . + CDS 34218 - 34586 183 ## LCRIS_00884 hypothetical protein + Term 34591 - 34617 -1.0 - Term 34578 - 34604 -1.0 35 17 Tu 1 . - CDS 34612 - 35538 955 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 35651 - 35710 8.9 + Prom 35569 - 35628 5.1 36 18 Tu 1 . + CDS 35670 - 36326 579 ## COG4912 Predicted DNA alkylation repair enzyme + Term 36329 - 36387 8.3 - Term 36315 - 36376 5.2 37 19 Op 1 3/0.000 - CDS 36391 - 37839 1548 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 38 19 Op 2 . - CDS 37926 - 38630 495 ## COG2188 Transcriptional regulators - Prom 38849 - 38908 9.1 + Prom 38879 - 38938 9.5 39 20 Op 1 8/0.000 + CDS 38996 - 39334 488 ## COG1440 Phosphotransferase system cellobiose-specific component IIB 40 20 Op 2 . + CDS 39375 - 39746 501 ## COG1447 Phosphotransferase system cellobiose-specific component IIA + Term 39750 - 39809 9.4 Predicted protein(s) >gi|227863015|gb|ACKR01000027.1| GENE 1 209 - 754 549 181 aa, chain - ## HITS:1 COG:lin1043 KEGG:ns NR:ns ## COG: lin1043 COG0242 # Protein_GI_number: 16800112 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Listeria innocua # 1 179 4 181 183 178 52.0 4e-45 MKDIVRDGDPVLRQVAKPLTFPLSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAA PQVGEGVQMAALLVPDDQGKIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVP RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKQDPFALKEDTVVI S >gi|227863015|gb|ACKR01000027.1| GENE 2 1016 - 2860 2458 614 aa, chain + ## HITS:1 COG:SP0681 KEGG:ns NR:ns ## COG: SP0681 COG1217 # Protein_GI_number: 15900582 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Streptococcus pneumoniae TIGR4 # 4 613 3 612 613 850 69.0 0 MSEKRRDDLRNIAIIAHVDHGKTTLVNQLLKQSDTLPEHMNLEDRAMDSNAIERERGITI LSKNTAVKYKDTTINILDTPGHADFGGEVERVMHMVDGALLLVDAYEGPMPQTRFVLKKA LEAGVKPIVVLNKIDRPGARPKKVLDDVLELFIELGANDEQLDFPVVYASALNGTSSYDP DPSTQKETMDPIFDTIIKNIPAPVDNSDEPLQFQITMLDWDDYVGRIGVGRIYRGKVKVS DNITVMKRDGSTQNFRVTKLFGYFGLKRNEIKEAKAGDIIAISGINDIYVGETIASAEHP EALPLLKIDPPTLQMDFVANDSPFAGREGDQVTPKKLEDRLIRQTRTDVSLKVEPTDQLN AWTVSGRGELHLSILVEELRREGFELQLSRPKVIYREIDGTMCEPFESVQIDTPDEYVGS VIDSLSQRKGEMKNMESTGNGQTRLEFLVPSRGLIGYNNEFMSQTGGYGIMNHTFEAYKP VVKNWNPGRRNGALVSINQGQSTTYSLQSVEQRGELFIGAGVEVYEGMIVGQSSRERDIA VNVTKGKNLTNTRAAGKDHAAAIKTPRTLTLEEAIEFLNDDEYCEVTPESIRLRKKILNT SERQKADKKRNRAN >gi|227863015|gb|ACKR01000027.1| GENE 3 3221 - 4144 943 307 aa, chain + ## HITS:1 COG:SPy0609 KEGG:ns NR:ns ## COG: SPy0609 COG0772 # Protein_GI_number: 15674690 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 297 92 404 434 188 35.0 9e-48 MLGWLVFLRFAHGSSAAVNGAVGWINLGFINLQPLEVTKLALVIYLSYVLDRRDGKLVKG KIKHNLSHPAILAAFLMCLVIVEPDFGGTAILFMITLVMFSVSGVPTKLALTWLAGIVIL VAAVFFIVVAWNPGFLQRSYQFQRLMSFLHPFELEQKGGAQLVNSYYAIHNGGLFGVGLG NSMQKRGYLPEPYTDFILSITAEEVGVILTILLVGLLFYLMWQIMEVGVHAVSQFDALIC FGVTTIIFTEAFFNIGAVLGLLPITGVTLPFISYGGSSMIVLTAAIGLVLNVSANEKMLQ EKDETVA >gi|227863015|gb|ACKR01000027.1| GENE 4 4141 - 4485 319 114 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00854 NR:ns ## KEGG: LCRIS_00854 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 114 1 114 114 176 100.0 3e-43 MSINKEIESTHLIKRVALIIYLKSVSDQYKLRHFGDIVYFSKKMKYCVLYVNRNECNEIK GQIAHLDFVNHVEISAEEEVNLDSQHIENQLAEMAQKAEKKLQLEQEKSENQLK >gi|227863015|gb|ACKR01000027.1| GENE 5 4482 - 5030 349 182 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 180 13 193 199 139 39 4e-32 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQFFHGGNVLDLYAGSGALGIEAV SRGCDHASLVDINHAACTIIKKNVALTKEEQRFNVYNMRSSAALKLFSENDEKFDLVFLD PPYAKEKIAKDMLQMVKSNLLNDHAIVVAETDDHTELGEITGFSLIKEHHLGKTIVRIYR KD >gi|227863015|gb|ACKR01000027.1| GENE 6 5033 - 5518 293 161 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 5 157 7 158 164 117 38 1e-25 MTIALFPGSFDPITNGHVETAKKAAEIFDKVYVVAMTNTAKKYLFTPEERADLIRDALRE IPNIEVLERPEEVTVNLAHELHAKVIVRGVRNSADFRYEQEIAGINKKLAPDVNTVLLFT SPENSFVASSMIKELARFDEDVSLFLPKKAAIALREKLKHE >gi|227863015|gb|ACKR01000027.1| GENE 7 5511 - 6554 376 347 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 [Bacillus selenitireducens MLS10] # 1 343 1 343 350 149 30 3e-35 MNNKKNNQSKKHLRNWLLALIALVLLVVLAVWPTDYYIEYLGEAMPVGQFIKSSNKRPNN FYLVTVSVTSRPAPVLQYLWSFTRPYDERVSSKELLGGQTSAQYNELQNWYMETSQQNAI YYAAKKAGNQHSLKYLGVYVMEVQKNSSFKNKLQIGDTVLGANGHRFSSTEEMMNYLRKQ KIGARVTISVLRGKQEKHFTGKIVKVKGTNKPGIGIQLVEHVVVKTKPKLKINAGEIGGP SAGLMFTLESYEVFTKQNLSKGHKIAGTGTISPTGKVGIIGGVDKKVVAASREGAEVFFA PTDSTSVKKSETNYAVAKRTAKKIHTKMKIVPVSTFDDALNYLKTHY >gi|227863015|gb|ACKR01000027.1| GENE 8 6629 - 7318 674 229 aa, chain + ## HITS:1 COG:BS_comEA KEGG:ns NR:ns ## COG: BS_comEA COG1555 # Protein_GI_number: 16079613 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Bacillus subtilis # 57 229 44 204 205 111 41.0 1e-24 MNFEKVKEFVLEKKAYLIGAIILVVGFYGLKKGDHQENAAAVQDQVMQSSTSSSGATTNT NAVTSSSSTTVSKTVTCDISGAVKHQGVYTLKNGARLQELIEAAGGTTARAQLKAINRAT LLKDQDKIHIPYKGEKVENVATAGSADNSQNSGSTSSSSPSNQGDGTKINLNTANVTELQ KLTGIGQKKAEQIIAYREQNGSFKKIEDLMQVSGIGEKTFASLKDQLAV >gi|227863015|gb|ACKR01000027.1| GENE 9 7395 - 9575 739 726 aa, chain + ## HITS:1 COG:SPy1408_2 KEGG:ns NR:ns ## COG: SPy1408_2 COG2333 # Protein_GI_number: 15675328 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Streptococcus pyogenes M1 GAS # 424 708 1 294 299 215 40.0 2e-55 MVQKIVALFFLGYFLLLLVQKYRVSLKIVSLIVGAFLLLIFLSKPKTNFVLTQQSQLRIY PDQVRIKDDYLTGVGNFAQGKILIGGKVTDVQKELLKHGNPILVTEINGECNSIEPATNI GEFNFQNYYQAKQIYQKLKYSSCQMKLLSITDFGDQLHQLRFELQNYFAKMPQLLGFFAS ELILGENNAQENQEILNNYRDLGVIHLLSISGLHVGIYVLLISVFCFNLKLTDEETFVCC TLVLLLGIFLSNGQAGFVRASLTYFLGKICKFKKYHVASIDLLGLTCILHLLVVPRLFLA TGALLSYILALGLQLTDKFGSFKQAILLNILLTPLLLLFFYQVNFLTVIFNMLVVPYFNW IVLPIAFFNIVTFGLTKDFAPILEKVLELGEKIIGQLSATKLGLLTFGQINWWQCLLLLI ATIILIVSLREKVNWRFNSKKIMVGLLSLYVIFFSMIHFPLRGQVTFIDVGQGDSILVTT PFPRKVYLIDTGGKLNFSGKKQTPQIDRITIPFLKSQGINTIDGVFVSHQDADHVGDLGP LLEQVNVKKLFMAEGLIKNPSFQKRLDGRVKDTKLLELLAGMRVKEPQITFNVVYPYQAG EGKNEDSLSLLFRVANKNWLFTGDLGQDGEKEIMQRMKLQVDYFKLGHHGSKTSSNPDFL RAIHPKQVFISAGRKNRFGHPHQETLTTLTQQQIPWVSTQDCGMISWYYGGLQSPRFSYF LKRDKK >gi|227863015|gb|ACKR01000027.1| GENE 10 9572 - 10558 758 328 aa, chain + ## HITS:1 COG:BS_yqeN KEGG:ns NR:ns ## COG: BS_yqeN COG1466 # Protein_GI_number: 16079610 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Bacillus subtilis # 31 287 35 293 347 114 31.0 2e-25 MTLLSLFKNTNNNNPHTLIWGADDFLNDYLVRSYAKEDRFKDLEHVTVDCESDGLDELIA SLTESSLFSEQKFIVVKNPFFLTAKVSKKLQKQIDDLQKIFENLADLEDVVVIVASYEKI DRRKKLTKTVLKQFNVVEPQIRPYEVASTTKALIKDEGYIITQSALQLLIERSDQVIDTI LSNYQKLKMVATDNKITEKSVMQNVDLSLAQNIFAILESALDKNYREAVERLDNQLREGT NPIQLLAVFENQLELILVVKILAQRGRSEPQIVKELGVHPYRVKLALRNRLKIDKLENLL RDAIDLEFKYKNGTYREDNFLKLFILNV >gi|227863015|gb|ACKR01000027.1| GENE 11 10622 - 10879 410 85 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227877359|ref|ZP_03995430.1| 30S ribosomal protein S20 [Lactobacillus crispatus JV-V01] # 1 85 1 85 85 162 100 3e-39 MPQIKSAIKRVKTQNATNERRASELSKLRTAIKKFKNAVESDSKEDVSKLHLEAERALDK AASKGLIHKNKAARDKSRLNKLANK >gi|227863015|gb|ACKR01000027.1| GENE 12 11081 - 11350 461 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227877360|ref|ZP_03995431.1| ribosomal protein S15 [Lactobacillus crispatus JV-V01] # 1 89 1 89 89 182 100 4e-45 MAISKTEKEKIMKEYATHEGDTGSVEVQVALLTADINNLTDHMKSHKHDHHSYVGLLKKI GHRRNLLRYLENNDINRYRELIKKLGLRR >gi|227863015|gb|ACKR01000027.1| GENE 13 11508 - 13265 1969 585 aa, chain + ## HITS:1 COG:SPy1020 KEGG:ns NR:ns ## COG: SPy1020 COG0595 # Protein_GI_number: 15675021 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pyogenes M1 GAS # 5 554 4 552 553 565 52.0 1e-160 MADQIKIMILSGVREQGKDMFAVQVNDEIFVLDAGLKYPDSSLFGIDVVIPDLDFFEQYG DRVAGIFLTHGHADSIGALPYILRKYDIPVFGSQLSIELAKIEVQRENKRRKNSLFHVID ADTEIDFKNASISFFHTTHSIPDSLGIDVHTPAGEIVYTGDFKFDPTAALNYRTDMDRLA EIEQKGVLALLSDSSNAEASFPNASEQDIGKFVTNVFRNAKGRIIVAAKASNLNRVQEVL NAAAATGKRVLLTGRDLAKIVRTSMKLGYLDVPEGLLMRVKDLKTVPDEQTVILETGRMG EPLNSLQKMAKKRHSMITIHKGDLVFIATTPSHAVETMVAETSDLVYKAGGTVIQLGRNI HTSGHATGRDLQLLITTLKPKFLIPVIGEYRLLEVVRDLAIKAGMNPKDIYITKNGDCLE YDFKQKRFFLTDPVPGEDTMIDGSGVGDVGNIVLRDREVLSDDGIFIAVVTIDRKKKKII AEPKVTSRGFVYIKANRQLMSDSIDVIKKAIQANFEHKKFDWTELKQDIRGDLEKFLYKK TNRRPVILPVVMEVNQNRHRAMQKRNEKAQNDNKNHAKDENKKNK >gi|227863015|gb|ACKR01000027.1| GENE 14 13296 - 14129 606 277 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00864 NR:ns ## KEGG: LCRIS_00864 # Name: not_defined # Def: BS_ysoA-like protein with TPR repeats # Organism: L.crispatus # Pathway: not_defined # 1 277 1 277 277 496 98.0 1e-139 MTSVSQQNLLKLAEEDERKGDLEAAIQNLEEALREEHSLDVILKLCKLYCANKQEDQAYA LIKEEPDLFSDQRVFKSYCQILAKNNFFIEALQLKNLVGVDLSEKVKPASEEKQRQIMQN FKQREQVTQSDYESLHKLNLPNFKAFARSVLLDPTPDFAVRLSLCEDLVRLGLEEKFEIW VIGQMESFIPANTLLLEKEPKYREIISSIGSKFHNSPSQLPLMLGEVNLVLGSLYPKINQ YIDEPDSFASDLVSFLQRKDGRSHQKLLEKIYKYLPQ >gi|227863015|gb|ACKR01000027.1| GENE 15 14319 - 15509 1329 396 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 4 396 3 407 407 516 63 1e-146 MAEKEHYVRTKPHVNIGTIGHVDHGKTTLTAAITTVLADKGLAKAEDYSQIDAAPEEKER GITINTAHVEYETENRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREH ILLARQVGVNYIVVFLNKCDLVDDPELIDLVEMEVRDLLTEYDYPGDDIPVVRGSALKAL QGDKEAQEQILKLMDIVDEYIPTPERQTDKPFLMPVEDVFTITGRGTVASGRIDRGTVKV GDEVEIVGLVDKVLKSVVTGLEMFHKTLDLGEAGDNVGVLLRGIDRDQVVRGQVLAAPGS IQTHKEFKGQVYILKKEEGGRHTPFFSDYRPQFYFHTTDITGEIELPEGTEMVMPGDNTE FTVKLIKPAAIEKGTKFTIREGGRTVGAGQVTEILD >gi|227863015|gb|ACKR01000027.1| GENE 16 15655 - 16986 1850 443 aa, chain + ## HITS:1 COG:SP0400 KEGG:ns NR:ns ## COG: SP0400 COG0544 # Protein_GI_number: 15900319 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Streptococcus pneumoniae TIGR4 # 1 423 1 424 427 414 55.0 1e-115 MSVKWEKTGKTTGDLTFDISQDEIKLGLDQAFRRVKKNLRVPGFRKGHVSRVIFDQYYGE EALYEDALNIVLPNAYSAAVKEAGIKAVGQPQIVPVSMDKDKDWTMKATVTVEPEVKLGD YKGIEVPKQNTRVYQKDIDAELDKRREQNAELVLKKGKAEKGDTVTIDYKGTIDDKPFEG GSAENYSLELGSGAFIPGFEDQLEGHEAGDDVDVVVTFPEDYGAKDLAGKEAHFATKIHE VKSKQLPKLDDEFAKDVDDSVDTLDDLKEKIKKDLKEQKEQQANDAIQEAAIEGAVSNAT IDEIPDAMIQEDVDTQLNQYLGNMQRQGIDPQTYYKLTNTNEQQLRSQFEKNAAERVKTN LVLEAIVAAEDLKATKEEIDKEIKDLASEYNMDEKMVRNTLSDDMLGHDITVRKAMDLIT DNAKQVAKSKLENKEDDDKKESK >gi|227863015|gb|ACKR01000027.1| GENE 17 17115 - 18380 279 421 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 154 397 258 448 466 112 30 5e-24 MANQFTDQEEIKCAFCGKTQDQVKKMIAGNGVYICNECVDLAKKIIDDELRADSLKAARE LPKPVEIKKELDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGS GKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIYI DEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKMDTTNI LFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADKINADDWTRHLTTADLVKFGMIPEFIG RIPIITTLDKLSSKDLVRVLTEPKNALVKQYKKLLSLDDVNLKFTDGALKAIADLAIQRN MGARGLRTIIENSIMDIMYETPSEEDIETVEVTKDVITKHAKPKVIRKNTDNKEQVSVND H >gi|227863015|gb|ACKR01000027.1| GENE 18 18370 - 18960 613 196 aa, chain + ## HITS:1 COG:SP1568 KEGG:ns NR:ns ## COG: SP1568 COG0218 # Protein_GI_number: 15901411 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pneumoniae TIGR4 # 10 194 12 195 195 199 53.0 3e-51 MIIESSSYAVSAVREDQYPKDNLPEIALAGRSNVGKSSLINTLLKRKNLARTSSQPGKTQ TLNFYKVNEKFYLVDVPGYGYAKVSQKKRQEFGEMIQDYLETRPNLKGLIILVDSRHEPT KDDIAMYDYAQYLNIPILVVCTKMDKIKKSQTNKVMSGLKKKLNLNYDHVTVLTFSSVTK LHVTELSNWIEKRINE >gi|227863015|gb|ACKR01000027.1| GENE 19 19139 - 19342 259 67 aa, chain + ## HITS:1 COG:L58790 KEGG:ns NR:ns ## COG: L58790 COG0531 # Protein_GI_number: 15673791 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 1 64 88 151 579 71 51.0 4e-13 MIITTVYGFGNVSVSYEQMTYAGIIWFILAGVCFFFPAGLMMAEYGSAFHDAQGGIYSWL AGSVGQK >gi|227863015|gb|ACKR01000027.1| GENE 20 19568 - 20584 976 338 aa, chain + ## HITS:1 COG:yjeM KEGG:ns NR:ns ## COG: yjeM COG0531 # Protein_GI_number: 16131981 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 327 173 497 514 239 41.0 4e-63 MSSIGGWFMIVMNAVFILASLTVLIMNHGQLAQPITGWQSFIISPNKSFQTPITIISFVV YAVFAYGGMETVGGVIDSMKHPEKDFPKGLIIGSLFTIISYVLMIFMTGFSVNYQKDILA ANANTGNITYTVYGTLGKAFGTALHLDPNTSLLIGKFFTRAIALSGLMGMTGALFVLLYS PIKSFIMGSDPRLWPKAATKLNKHGIPANAMWAQTVFVCLLVAVVSFGGSAATSFYQILT DMGNVAATAPYIFLIGAFPFFLKKDYPRKFRVFTNYKWTVALVVFVELIVCTGIIFTVLQ PVLEHRYATAFWTSFGPIFFGLVAYRVSKKKHGLKDLD >gi|227863015|gb|ACKR01000027.1| GENE 21 20628 - 21632 956 334 aa, chain - ## HITS:1 COG:lin2126 KEGG:ns NR:ns ## COG: lin2126 COG0253 # Protein_GI_number: 16801192 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Listeria innocua # 2 327 4 324 329 257 42.0 2e-68 MINLFKVHGSQNHFFILDQTQFEHELSDAELKNFTQKITNPQTGLLHGADGVLVVNHPVH SNSLGQMRVINADGSEASMCGNGLRTVARYLSEKTGKDNFLVDTMNASLRVRREKDFASN VPAFAVEISPVRFNKEALPFDNLGQERIIDAWLPEIYPGLRFTSIAVPNPHLISFVNQAE ITGPILGIVGKKLNSNNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGMSATS LALTLTHPEIGNLNTPISVYNPGGMVKTIVHYEKNSYWIELIGNATFTHRIKLSEADLRK GDFSNVQIQKTAEQSAYEKFIANLPKFNDITTLA >gi|227863015|gb|ACKR01000027.1| GENE 22 21641 - 22996 1085 451 aa, chain - ## HITS:1 COG:BH1500 KEGG:ns NR:ns ## COG: BH1500 COG0527 # Protein_GI_number: 15614063 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Bacillus halodurans # 1 450 1 448 456 403 45.0 1e-112 MKIVKFGGSSLATGESVAQAIQIILSDPQRQVMVVSAPGKRNTTDIKVTDLLIKYADLAL KHKNCVEIVNKIFSRYQEIGHYFGLADTELSIIKQILLELPNQGYPNEKYLLAAFKAHGE RLNARLITLILRHQGINSRFLDPAEAGLIVTGEPNDAIVNPESYLNLDQIKIKADERIVF PGFFGMTPSGNIATFSRGGSDITGAILARGFHADLYENFTDVNGIFAANPHIIEHPQSIK KMTYREMRELSYAGFSVFHDEALIPAIQGQIPINVKNTHDPSNPGTMIVPEKDFVPDNAI TGVTSQKHFSALYLHKYLLNKEAGFTLRILQILYQHNIPYEHMPSGIDDITIIFNNDFLN DQLIDQICNEIQATINPDQLEWIEDYAIIMVVGEGMRQKHTISRQIIDSLGDHDISPQMI NQGASQISIMIGTKKEKADEAVKIIYQKFFN >gi|227863015|gb|ACKR01000027.1| GENE 23 23166 - 23366 96 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVDSAPRILFATVRSLFNYAPAQAFSMTQLRQPPLLQFIFVLPNSELLLMSAAPLRLTVV YNFIKT >gi|227863015|gb|ACKR01000027.1| GENE 24 23455 - 24765 1587 436 aa, chain + ## HITS:1 COG:BS_lysA KEGG:ns NR:ns ## COG: BS_lysA COG0019 # Protein_GI_number: 16079395 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Bacillus subtilis # 11 431 10 430 439 492 56.0 1e-139 MNSQIAVDQINEQGHLTIGGVDIVELAQKYGTPLVVYDVDQIRRQIRAFKKVFEEENMAY AVSYASKAFAAIAMYQVIAEEGAYTDVVSAGELFTAIKANFPMERVSFHGNNKSLTELEM AVKNHVGKIIIDNFHEIQLLAQVLKKYDATISVMLRIAPGISAHTHEYDQTGQIDSKFGF DLESGQAEKALKQVLANPRMKMLGIHAHIGSQIFALNGFEMGAQKLMVVAQDWREKYGYL AQVINVGGGFGIKYTQEDHPLRPEEFVKTIVKVIKTEAEKMNYPLPEIDIEPGRSIVGPA GYNLYTVGSRKDIPGYRSYITVDGGMGDNIRPALYQAKYETVLATDPQAPLTEHVRIAGK YCESGDILAEDQALPQVKAGDLLAMLDTGAYGYSMASNYNRNPRPAVVFAENGKAKLVIK RESLEDLVHLDQSYLN >gi|227863015|gb|ACKR01000027.1| GENE 25 24780 - 25487 832 235 aa, chain + ## HITS:1 COG:lin1010 KEGG:ns NR:ns ## COG: lin1010 COG2171 # Protein_GI_number: 16800079 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Listeria innocua # 1 235 1 236 236 263 63.0 2e-70 MAKLDAKSIIDYIGNAPKKTPVKVFIKGDLAQIDFPKEIENFTEAHSGAIFGDWKDIEPF LKENHQITAYHIENDARNSAVPLLDFKKVNARIEPGAIIRDQVVIGNNAVIMMGAIINIG AEIGANTMIDMGVVLGGRAIVGQHCHIGAGSVLAGVIEPASAKPVQIDDNVMIGANAVVI EGVHVGEGAVIAAGAVVTHDVPAHTMVAGVPAKIIKKVDEKTSSKTELEDNLRKL >gi|227863015|gb|ACKR01000027.1| GENE 26 25489 - 26643 938 384 aa, chain + ## HITS:1 COG:L80177 KEGG:ns NR:ns ## COG: L80177 COG1473 # Protein_GI_number: 15672264 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Lactococcus lactis # 9 384 4 378 384 394 52.0 1e-109 MSVLSESELIQIRRHLHQIPELALAEKETHDYLIEVIQKFKQDYLEVEIPSTLPTAILVL VKGRKPHRTIGYRADIDALPVTEKTGLAFSSKHEGVMHACGHDIHMTVALGLLSYFSENQ PQDNLLFFFQPAEESQSGGMQAYEKRIFHDQFKPDEFYGLHDNPALPAGSIGCRMGTLFA GTTEVNIDILGKSGHAAFPQDANDTVVAAASLIMQVQTIISRSIDPIQSGVITLGKIEAG TIRNVIAGQARIEGTIRGLTQNMILTIDQRLKEICLGIEKSFGVEVKLDLNQGGYWPVEN NPQLTKNFISYMKSQPTVNFITTEPKMTGEDFGFLLAKFPGTMFWLGVGNPDSQLHTATL NPDEKSIQRGVDAIKGFLINRMRQ >gi|227863015|gb|ACKR01000027.1| GENE 27 26645 - 27571 776 308 aa, chain + ## HITS:1 COG:SP1014 KEGG:ns NR:ns ## COG: SP1014 COG0329 # Protein_GI_number: 15900886 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Streptococcus pneumoniae TIGR4 # 9 285 11 287 311 267 46.0 2e-71 MATLIDADLLTAIVTPFDENQKIDFASLEKLVNYLIDQGCNGFVVGGTTGETPTLTHDEK IDLYQHFGQIVNGRVPVIAGTGSNDTATTIAFTNEVAQIKGIDYALVVVPPYNKPDQRSM IAHFSAVNAQTKMPIMIYNIPGRTGVKMEKETVVQLSRLKNIKGIKQCASLEEMEYIIDH KDPNFLVFSGEDTQALPARLLGANGVISVASHLYCKQMRRMFDDLYEGNYPEAGTIQRWL TPKMQALFMYPSPAPVKAALNAQGFIVGGCRLPLVALGDEEKEKLAQHLGLNANALMQKL PLNLGKDW >gi|227863015|gb|ACKR01000027.1| GENE 28 27578 - 28357 860 259 aa, chain + ## HITS:1 COG:L0094 KEGG:ns NR:ns ## COG: L0094 COG0289 # Protein_GI_number: 15673543 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Lactococcus lactis # 4 259 7 258 260 258 50.0 8e-69 MPKKVLIAGFTGAMGQKAVSLVNQLPNFELVAGFAPKAVNEPERYHLPKTAQIFNQLSQI PDHAADIWIDFTTPAAVYDNVYFALTHQIKPIVGTTGLSDDQEATLIELAKKEKLGGLIA PNFGMSAVLLMKFAEEAAKYFPDVEIIEMHHADKKDAPSGTALATAKMIAQNRPEHQTAP DETETLANVRGGDYQGIKIHSVRLPGYIAHEQVLFGGPGEALTIRQDSFDRDSFMSGVKV ALEKVDQLTELVIGLENIL >gi|227863015|gb|ACKR01000027.1| GENE 29 28369 - 29544 1097 391 aa, chain + ## HITS:1 COG:L56488 KEGG:ns NR:ns ## COG: L56488 COG0436 # Protein_GI_number: 15672039 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Lactococcus lactis # 14 391 11 390 391 348 48.0 1e-95 MPELANDLALSKKIQSVKASGIRIFDNKVSTIPGIIKLTLGEPDMNTPEHVKTAAIESIR NNDSHYAPQKGKLELRQAISNYLKKASGVVYDPETEIVVTVGATEAINATLFSITNRGDK VAIPTPVFSLYWPVATLADADYVLMNTSEDNFKLTPERLESTLKEESNIKAVILNYPVNP TGVESTESEIRALAEVIKAHNLYVITDEIYSTLTYGVKHFSIASVIPERAIYISGLSKSH AMTGYRLGYVAGPAKIMEQIGKVHGLMVTTTTDSSQAAATEALEHGLDDPEKYRKIYQRR RDFVLDELAKMGMQAVRPQGAFYIFAKIPAKYGKNDMQFALDLAFEAKVGITPGSAFGPG GEGYVRMSYASSDENLHEAMERMKNFLRGEK >gi|227863015|gb|ACKR01000027.1| GENE 30 29544 - 30602 1092 352 aa, chain + ## HITS:1 COG:lin1476 KEGG:ns NR:ns ## COG: lin1476 COG0136 # Protein_GI_number: 16800544 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Listeria innocua # 1 352 1 347 347 408 59.0 1e-114 MVKEYNVAILGATGAVGRRMIEQLEQSTIPVKSLKLLASSRSAGTVLKFKDQDLKVEETT PESFDGVDLVLSSAGGAVSKKFLPEAVKRGAVCVDNTSAFRMEPDVPLVVPEVNPEALKK HHGIIANPNCSTIQMVMALEPVRRKFGLKQIIVSTYQAASGAGQAAIDELKKESQDYLDG KDMQADAHILPTKGDKKHYPLAFNLLPQIDVLEDSGYSHEEWKMIHETKKIMLNDMNAKD IKVTATCVRVPVPISHGESVYFTLEDETATAQDIKDAVAAFPGNVLEDDIKHQIYPQPIN ATGKRETFVGRIRPDYENKGAFNMWIVADNLLKGAAWNTVENAEYLVKMNLL >gi|227863015|gb|ACKR01000027.1| GENE 31 30765 - 31808 867 347 aa, chain + ## HITS:1 COG:SA0909 KEGG:ns NR:ns ## COG: SA0909 COG1680 # Protein_GI_number: 15926643 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Staphylococcus aureus N315 # 22 340 81 387 397 99 29.0 1e-20 MSNHAVQAKSYSNKQLRQYTLKMMKKHHLRGSIEIVKNGHAQRVSLGYGYYSKRLKNGNT KLLYPVGSLQKMVTAAIITQLIYQKKFNQNTKISRWYPNLKHANQITVGQLMTHTSGINV IGTESNHGVNFSENGAINWTIAQANARENTGRSKFNYNNANYVLLAGIISKVTGKSYAAN VKQRVIRSLKLKQTDIYQQIPRSKTDAISYLYSGGKNYSASAYANRNVVSQLPGAGNLFS TANDYYKIQSGMQNGKILTKKQFHYLGHLSSKVNTYSGGFYLKKNQTLKVAYGNFGDTHF VNWMQLTTDNQNGIVMFLNQTYGSKNHIRAIGYNILKHIKANTFIKG >gi|227863015|gb|ACKR01000027.1| GENE 32 31851 - 33461 1441 536 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00882 NR:ns ## KEGG: LCRIS_00882 # Name: not_defined # Def: triacylglycerol lipase # Organism: L.crispatus # Pathway: not_defined # 1 536 1 536 536 1014 99.0 0 MYPDNNILTYLKWRGDVDFSTSPFNDIDALVLSIFSYLELPGIVKSNGTTISLEKAAKLY FADDHPRYDNLQYQELFKLMAHADRFKNAKLSYFISTLTEHTQFSAIKIELTDGTNFIAF RGTDDSLIGWKEDFEISFKITVAQQQAVKLLETILKADDQDYYLGGHSKGGNLAEYAAIN IEPKLRKRIKRIYTFDSPGIAEEIGAQLPNKYLQNTLRRFVPDFSVIGRLFESKNIPATI VDSTRKGLSQHDAFSWQIIGSNFDTRRHRNAQSQVYNQLINQWIGNATLEERESLTNDLF SALSSSGATKINELDKNGFGGFGAILFSLADSSRRTRFVFGSLFSSIWQTIKSQQLTKAL FSTDTIVGWVLVVLGIISLTLPQYAVRAFGALVAFTGIGFSVHQILTTAKSSLKDRQKNF FIISYLVVFALSTALISNNRLLIFLAHYFLGLFLIIYSYIRIRQLVFRKLPGIFQITIVA IEALIAFALGIIVVVNPSAFNRRAIIIIGILLIAYGFFKLVGELFGQRSKMPKNHR >gi|227863015|gb|ACKR01000027.1| GENE 33 33795 - 34061 405 88 aa, chain + ## HITS:1 COG:CAC2762_2 KEGG:ns NR:ns ## COG: CAC2762_2 COG3976 # Protein_GI_number: 15896018 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 3 88 47 132 132 67 43.0 5e-12 MLKEGTYSARARGMAGFVGVTLTVADNKISTVDLDLSTETPQYGQKAEKTLKQEILDKQS AHIDAVTGATFTSNGVKEATSEALKQAK >gi|227863015|gb|ACKR01000027.1| GENE 34 34218 - 34586 183 122 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00884 NR:ns ## KEGG: LCRIS_00884 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 122 50 171 171 172 99.0 4e-42 MVIAYLIMSQWDHVNLGNLFLLLAAFVVLSGVFVYWGMRLASKIFKFSTTTLTLVEYYIQ WSLIYVTVYQAIFSNIKHITSITNFIRVGNFLDPNLFVVAILPSFISVWIAVILYKKSIK AI >gi|227863015|gb|ACKR01000027.1| GENE 35 34612 - 35538 955 308 aa, chain - ## HITS:1 COG:SA2078 KEGG:ns NR:ns ## COG: SA2078 COG1957 # Protein_GI_number: 15927863 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Staphylococcus aureus N315 # 2 307 3 311 313 238 40.0 1e-62 MKQIYFNHDGNIDDLVSYLLLLQAPDIKLLGVGAIDADGYIDPSVEACRKMTDLFNLRGD DLTIARSNSRAVNQFPHEWRMATYSFNYLPMLNESGKINTQKAKLPAHLDMVEKIKEADE PIALVMTGPLTDLARALDVDPDIEKNIEKLYWMGGSLDGHGNVAMVNADGSQEWNSFWDP YAVKRVFESNIPIQMVGLESTEELPLNDELRQHWASLRKYPAMDLIGQGYSLIVSIPSAE LYLWDVLTTISALYPEVVETETAKARVITDGLSAGSFVRDPKGREVTLVTKANKDLFFQK MDEILERK >gi|227863015|gb|ACKR01000027.1| GENE 36 35670 - 36326 579 218 aa, chain + ## HITS:1 COG:Cgl0917 KEGG:ns NR:ns ## COG: Cgl0917 COG4912 # Protein_GI_number: 19552167 # Func_class: L Replication, recombination and repair # Function: Predicted DNA alkylation repair enzyme # Organism: Corynebacterium glutamicum # 14 216 18 206 208 150 42.0 2e-36 MNIETLKKEFSARANEEKANHLVGYMQNQFLFYGLQTPERRAIYHNFLKDEKKKKEVDWK LLDQAWDEEQRELQYFACDYLLAMKKYIVFDDLAKIERFVRTKQWWDTIDSLIKIYGYVG LTDNRVDDLMLKWSQDPDFWVRRVAIEHQLLRKKKMNTALLQKIIENNLDSQEFFINKAI GWALRDYSKTNPDWVRNFIELHREHLAKLSIKEGSKYL >gi|227863015|gb|ACKR01000027.1| GENE 37 36391 - 37839 1548 482 aa, chain - ## HITS:1 COG:L22116 KEGG:ns NR:ns ## COG: L22116 COG2723 # Protein_GI_number: 15672399 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 6 481 3 478 478 623 62.0 1e-178 MYSAKMPKNFLWGGAVAAHQLEGAWKEGGKGTSVADVMTVGSATKPREITDGVLEGKNYP NHSAIDFYHHYKEDIKLMAEMGFKAFRTSIAWTRIFPNGDEAEPNEEGLKFYDDLFDTCH EYGIEPVITLSHFEMPFNLAKNYGGFTNRKVIDFFVRFAEVCFKRYKNKVKYWMTFNEID NQSAFNNDFLMATNSGILFKDGMTDRDKEAAMYQAGHYELVASALAVKIGHKINPDFQIG CMINYSPVRPLTPSSDDVLLADKWEQRRDWFSDVHVFGEYPNAVESYIERNGYRPDITDE DKIVLKEGTVDYVGFSYYQTTTVSSEKVKPDELTDLAKAVAKNPTLKRSDWGWEIDPEGL RIALNQLQDRYHKPLFIVENGLGAYDKVETDGSIHDDYRIDYLRNHISEMEKAVELDGVN LMGYLPWGCIDLVSAGTGQMDKRYGFIYVDKNDAGEGTLARSRKDSFFWYKKVIESNGQD LD >gi|227863015|gb|ACKR01000027.1| GENE 38 37926 - 38630 495 234 aa, chain - ## HITS:1 COG:lin0901 KEGG:ns NR:ns ## COG: lin0901 COG2188 # Protein_GI_number: 16799974 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 225 1 225 237 154 38.0 1e-37 MSRYQDIANDIEKDIIEKKYTRKLPEQFELAQKYQTSRVTIVHALKILQNKKLIRTVKGH GTFITSKSIPDIFLNSDVNEHTGFTRHVNNALAITSNVIAFNIRKPSISERKALCLEKDD EVYDIIRQRILNKKPAKLEYTVMPVSRIPGITLDILHKSIYSYIQNDLGLKIGRADRIIT AEKSDAYDMKYLECKNDDPVLCIQQKAFLKDGRPFEISESRNRYDRGDLTVNGK >gi|227863015|gb|ACKR01000027.1| GENE 39 38996 - 39334 488 112 aa, chain + ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 4 110 2 101 101 93 55.0 1e-19 MAEQTIMLNCSAGMSTSLLVTKMQAAAKEQGIDAEIFACPASEADDKMAQQEIDCVLLGP QVSYMKGDFENKVKGKGKDGKDIPLDVINMQDYGMMNGANVLAQAEKLIKGE >gi|227863015|gb|ACKR01000027.1| GENE 40 39375 - 39746 501 123 aa, chain + ## HITS:1 COG:lin2833 KEGG:ns NR:ns ## COG: lin2833 COG1447 # Protein_GI_number: 16801893 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Listeria innocua # 20 110 8 98 100 87 58.0 5e-18 MAEEKKTPEQKEQETLMAAMGLIANGGNAKSLAFEAIRLAKKGNIAGAREKLKESDKSLL EAHNSQTGMLTKEAQGDHMHVTLLVVHSQDHLMNAITFRDLAGEMVDLYEKLYESGSLKK EDK Prediction of potential genes in microbial genomes Time: Wed May 25 06:12:30 2011 Seq name: gi|227863004|gb|ACKR01000028.1| Lactobacillus crispatus JV-V01 contig00029, whole genome shotgun sequence Length of sequence - 9395 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 5, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 419 317 ## LCRIS_00892 hypothetical protein + Prom 489 - 548 8.8 2 2 Tu 1 . + CDS 590 - 1942 1475 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 1990 - 2038 3.2 - Term 1972 - 2033 4.7 3 3 Tu 1 . - CDS 2050 - 2460 519 ## LCRIS_00894 hypothetical protein - Prom 2490 - 2549 4.6 - Term 2504 - 2546 2.0 4 4 Op 1 3/0.000 - CDS 2563 - 4044 1650 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 5 4 Op 2 1/0.000 - CDS 4055 - 4777 633 ## COG2188 Transcriptional regulators - Prom 4802 - 4861 9.4 - Term 4829 - 4886 0.1 6 4 Op 3 8/0.000 - CDS 4927 - 6354 1708 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 7 4 Op 4 1/0.000 - CDS 6354 - 7736 1683 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase - Prom 7778 - 7837 14.7 8 4 Op 5 . - CDS 7920 - 8786 282 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 - Prom 8819 - 8878 7.3 + Prom 8763 - 8822 6.8 9 5 Op 1 . + CDS 8905 - 9114 204 ## LCRIS_00901 nitroreductase 10 5 Op 2 . + CDS 9135 - 9377 335 ## LCRIS_00901 nitroreductase Predicted protein(s) >gi|227863004|gb|ACKR01000028.1| GENE 1 3 - 419 317 138 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00892 NR:ns ## KEGG: LCRIS_00892 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 138 38 175 175 243 99.0 2e-63 IRYIITIFFFTNLMWLIIDVNYHSVLGIIVSAIMTIYSGIASIEQLTKMHNRKREVPISR VYLEVQAALNLLFIILTFLPLGKYLFPFIENQSIMFFMTTLFLAGILLCVWSEYRIHQIM NDQDRYHKVIETFKKHQQ >gi|227863004|gb|ACKR01000028.1| GENE 2 590 - 1942 1475 450 aa, chain + ## HITS:1 COG:SP0310 KEGG:ns NR:ns ## COG: SP0310 COG1455 # Protein_GI_number: 15900243 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 7 445 9 447 448 367 45.0 1e-101 MADSKSGSFKDALAAKAGKFAGSRFVRAIMDAGYSVISFSIIGAVFLILNVLPQAFPIPG FAAFYANTLGRFSGLFQVVYNSTMGILALVFAGTFAYSYTDIYRREEKIDLVPMNGLMMF LMAFFITVLELIWKNGAVQFITTFTKTKMVAGGYEASTNGITRIAAVGIFTGLVIAWLTV QIYRYTVKHNWRIKMPASVPSGVSNSFSALIPGFCIAVVVALIELILVTLGTDIFQVLYI PFSFISAIADTWWGFLIIIFLIHFLWWFGIHGATIMSSFYTPIVLANMAANVNGANHFFA GDPMNSFVIIGGSGATLGMAIWLAFGSRSAQLKEIGKVELVPAIFNINEPLLFGLPIVYN INLLVPFICAPLASGLVGYIAVTSHLVPKIIVQQPWPTPVGLSGYLATTSWQGAVLSIVC ALVAFLVWFPFIKHYDNVLLKKEQADATKN >gi|227863004|gb|ACKR01000028.1| GENE 3 2050 - 2460 519 136 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00894 NR:ns ## KEGG: LCRIS_00894 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 136 1 136 136 247 100.0 8e-65 MITITKQFNFKAKDFFDYLEEQLIPAIKKARGNDMPVTLAKGTKYEVDGAQVELTDYERN KVYGAHFKTDRMELVIKYVTEDNDQGVKITFSEDMLSFDREKHGKLQTMFYNFQLKMGAK KELRRMGDNVLANIAA >gi|227863004|gb|ACKR01000028.1| GENE 4 2563 - 4044 1650 493 aa, chain - ## HITS:1 COG:CAC1405 KEGG:ns NR:ns ## COG: CAC1405 COG2723 # Protein_GI_number: 15894684 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Clostridium acetobutylicum # 1 493 1 473 473 508 51.0 1e-143 MAFSKNFTWGGATAANQYEGGYDEGGKGLNAVDVLTNGSATEPRKVTWKKPNGETGATPL VWGQEFSLPEGAVPTILDGYYYPSHQGTDFYHHYQEDIKLMADMGFDVFRLSMNWSRILP NGDDEQPNEDGLAFYDKVFDECAKYGIEPLVTLSHYETPLSLITRYGGWKDRHLIDAFVH YSDIVMKHYKGKVRYWLTFNEINAMDMAPYMGGGLIDGSEQNRAQGAHNQFVASAKVVKL AHEIDPNNRVGQMLAYSAYYPYTCDPADQLKVMEAKQEMLFYSDVQTGGRYPNYRLKKYE RDGIKLNDTPEDYELIAKYPADFLSFSCYTSNVLTTHEADAKANGNVSAGGVVNPYLESN AWGWATDPDVLRIGLNELWDRYHKPLWVVENGLGSADTLEKDGSIHDNYRIDYLRDQIKS MRDAVTIDGVDLMGYTTWSAIDLVSNGTGEMKKRYGFVYIDRDDRGNGSLKRYPKDSFYW YKKVITSNGEDLD >gi|227863004|gb|ACKR01000028.1| GENE 5 4055 - 4777 633 240 aa, chain - ## HITS:1 COG:lin0901 KEGG:ns NR:ns ## COG: lin0901 COG2188 # Protein_GI_number: 16799974 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 5 237 3 234 237 222 45.0 5e-58 MAKAKYLEVASELKKRIENGVYSKQEPLPDQEAFAKEFDVSRLTVKKAFDGLERQGLVYK QSGLGTFVAGEVPIKSDIDSPVNAFTGLRNLLGKNEVTSKVLHFSVEFPDEQIQKNLDLK RNEPVYNIVRLRIYDDQPYIIEHTYMPIKLVPELDEKILHASIYNYIHQKLHLKFGHAYR KIRAAKPNEYDKKFLDAKDDDPMLELEQIIWLTNGQPVEYSVSKNRYDTRDYVLLDNNRF >gi|227863004|gb|ACKR01000028.1| GENE 6 4927 - 6354 1708 475 aa, chain - ## HITS:1 COG:L31294 KEGG:ns NR:ns ## COG: L31294 COG1455 # Protein_GI_number: 15672800 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Lactococcus lactis # 12 472 4 469 472 484 58.0 1e-136 MADQKQSGFGLWVNQHIMPPIMKFVNTKAITALQNGMVYSLPFIIIGSIFLILGNIPIKS VADAINASGWGAIFAQANNTTFQMMGLWAAIGIAYVYVKNENYEPLAPGLTSAAAFLMLQ NLSIDNPLKAALTSGLTDGSMTGKVVTENIDKLPHALQSFLESPVTGVINTKWLGGDGMI AAIIVGLLVGWIYTMIMKAGWTIKMPAQVPPAVSNQFTAMIPSGVILTGSMLIYAAFNAF AHTDFLNWIYNTLQIPLQGISDSFGGAIAIGFLVPFFWFFGVHGGLIMGSLVAPMLQANT ADNARLFAEGKLTIAQGAHVVTNEFYNNFINLTGSGITIGLIIFTLVAAKSVQLKSIGKL ELVPGIFNINEPFLFGLPIVMNPMLAVPFFLTPLVVAASTYLVIKTGIVPPLNGVAAPWT TPAVISGFLIGGWKMAIWQACTLLISTAIYWPFARKYDKVLLAKEMKEAKQEANK >gi|227863004|gb|ACKR01000028.1| GENE 7 6354 - 7736 1683 460 aa, chain - ## HITS:1 COG:L32812 KEGG:ns NR:ns ## COG: L32812 COG2723 # Protein_GI_number: 15672801 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 4 460 2 452 453 537 56.0 1e-152 MSEKRKLPSTFFWGNSVSSMQTEGAWNEDGKGLSVYDVRPATDKTTDWHVAIDEYHRYDE DLDLMKDMHLNMYRIQISWSRVCPDGDGDFNEKGIDFYDRLINAMLKRGIEPMICLYHFD MPLNLAKKYNGFMSRHVVDAFVRFGKKMIDHFGDRVKYWIVFNEHNLYFQDEVFNISGYE HGEKSLDDMYTIFHHTMMCHIQLANYIHENYSDVKIGGMLAYQQIYPATSKPKDIWSAKQ VQEFLNFNIYDADTGRGYSPEVMQYAKNHHINMDITDEDKEIMKKAKADFLAFSYYSSWV LSSDKIPAGEAPNRYLNQGGVEAKYVKTNDWGWAIDPLGFRNAITTMYNYYRIPIFPIEN GIGLKETWDGKNMIEDDERIAYHRDHIKAMKDAIFDDGAKVLGYLGWGLIDIPSSHADME KRYGAIYVNRSNHDLKDLKRVPKKSFYWFQKVLSDNGDEL >gi|227863004|gb|ACKR01000028.1| GENE 8 7920 - 8786 282 288 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 4 285 6 316 323 113 28 6e-25 MNLAAIDIGGTTIKLATWKDGKLQNNHAVDTPKDLNGFYDVLTAEINKIKQDTKIEGVAI SSPGAVDQKTGIIGGSSALPYIHNFKIVDELEKRFELPVSIENDANSAALGELAAGAGKG CNSMVFFVIGTGIGGALIINQKVWHGAHLFGGEFGYMLMGTHTLSELASPVTMANHYNER TGKNLDGKTVFALADQDDPVASDVRSTLIHSLAVAIYNIQHSFDPEKIVLGGGISNNPEL IPLLNKEIDQIEANSDLHTLKPVIALCSLKSDANLRGAVANFEQKHQN >gi|227863004|gb|ACKR01000028.1| GENE 9 8905 - 9114 204 69 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00901 NR:ns ## KEGG: LCRIS_00901 # Name: not_defined # Def: nitroreductase # Organism: L.crispatus # Pathway: not_defined # 1 68 1 68 162 124 97.0 9e-28 MVNSIFTNRRAVRNFSSESISDDEIKSLIAAFQTTPCGMHQTDVMSLVVVKDEALRDKIE TKTDNTHYL >gi|227863004|gb|ACKR01000028.1| GENE 10 9135 - 9377 335 80 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00901 NR:ns ## KEGG: LCRIS_00901 # Name: not_defined # Def: nitroreductase # Organism: L.crispatus # Pathway: not_defined # 1 80 83 162 162 159 98.0 2e-38 MFGERDASCGAENIMLEATDLGLGSVYVMGGAARLNDDSELQKELGIDPAFQTSVIVPVG KIGEKPEATDRSNRYQVTIY Prediction of potential genes in microbial genomes Time: Wed May 25 06:12:42 2011 Seq name: gi|227862993|gb|ACKR01000029.1| Lactobacillus crispatus JV-V01 contig00030, whole genome shotgun sequence Length of sequence - 9200 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 7, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 2 - 61 6.3 1 1 Tu 1 . + CDS 81 - 740 635 ## LCRIS_00902 hypothetical protein + Term 757 - 809 8.5 2 2 Tu 1 . - CDS 820 - 2106 1648 ## COG0148 Enolase - Prom 2175 - 2234 8.7 + Prom 2242 - 2301 6.2 3 3 Tu 1 . + CDS 2321 - 3154 738 ## COG1307 Uncharacterized protein conserved in bacteria + Term 3163 - 3196 1.0 - Term 3149 - 3183 2.0 4 4 Op 1 . - CDS 3187 - 3762 389 ## COG0671 Membrane-associated phospholipid phosphatase - Prom 3794 - 3853 7.7 - Term 3807 - 3857 9.4 5 4 Op 2 . - CDS 3866 - 4843 1297 ## COG3049 Penicillin V acylase and related amidases - Prom 5011 - 5070 80.3 + TRNA 4982 - 5070 66.9 # Ser CGA 0 0 + Prom 4984 - 5043 80.3 6 5 Tu 1 . + CDS 5248 - 6279 1004 ## COG2855 Predicted membrane protein + Term 6289 - 6342 3.7 - Term 6284 - 6322 1.5 7 6 Op 1 . - CDS 6332 - 6550 280 ## FI9785_1084 hypothetical protein 8 6 Op 2 . - CDS 6504 - 6791 284 ## LJ1123 hypothetical protein - Prom 6984 - 7043 8.6 + Prom 6862 - 6921 6.3 9 7 Op 1 15/0.000 + CDS 6963 - 8864 1708 ## COG2217 Cation transport ATPase 10 7 Op 2 . + CDS 8890 - 9120 374 ## COG2608 Copper chaperone Predicted protein(s) >gi|227862993|gb|ACKR01000029.1| GENE 1 81 - 740 635 219 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00902 NR:ns ## KEGG: LCRIS_00902 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 5 219 1 215 215 296 98.0 3e-79 MELFMNRKIFVGIAAVTLAVTLTGCSQVHFGKDAVTIGEVKQNKKTVNVKKAKSAKVQSS SSKKIKPKKDSKKKIKENKKNRTKKSAVVIWNTAKTAKLKTAVNNWGKKSGQTYQFYDGK KNLKTKKGATYPGVLATNRFVLNKKSIKIGYSPTGKAKYDYNVLAIANDDFKSWHNTYLF CLKSDKPVILLDQSRNGNPIVVKVVKDTSLNKIFSQLVK >gi|227862993|gb|ACKR01000029.1| GENE 2 820 - 2106 1648 428 aa, chain - ## HITS:1 COG:L0008 KEGG:ns NR:ns ## COG: L0008 COG0148 # Protein_GI_number: 15672258 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Lactococcus lactis # 6 422 5 421 422 520 63.0 1e-147 MLKSVIENVHALEIFDSRGNPTVEVHVTLSNGVVGKAEVPSGASTGENEAVELRDGGSRL GGKGVSKAVNNVNTEINDALKGMDPYNQPKIDKTMIDLDGTPNKGRLGANAILGVSMAVA VAAANDAHLPLYRYLGGTDLEMPQTFHNVINGGEHADNGIDIQEFMITPVAKTSFRDGFE KIVNVYHTLKKVLEDMGYETGLGDEGGFAPNMKNSEEALKALHESIIKAGYKPGEDIAIA CDCAASYFYNKDDHKYHLEGKVLTDEELADYYDKLLDEFPELISMEDPYDENDVDGMVKF TKSHKDRIQIVLDDFICTNPALLTKAIKEGAGNASLIKLNQIGTVTETLETIRLSRKNGY NTMISHRSGETGDTFIADLAVAVNGGQLKTGAPARSERVEKYNRLLEIEEELGDGERLAF FPDDVDHD >gi|227862993|gb|ACKR01000029.1| GENE 3 2321 - 3154 738 277 aa, chain + ## HITS:1 COG:SP0742 KEGG:ns NR:ns ## COG: SP0742 COG1307 # Protein_GI_number: 15900637 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 5 275 4 278 281 189 37.0 6e-48 MENIKLIVDSSANMNNDPARNLEVVPLTISFGGKDYLDNQDLNMKEFLSNINQNNVAGKT TCPSIQAWLDALEGTEKAIIVTMTSGMSGTFSSALQAKAMYEEKHPLSKIIVVDSRSAGP ELAIIVHGIEKMLQGEMRFVDLEEAIAKFRMQTHLLFVLQSLHNLSLNGRVSPAVAKIAG LLKINLIGTASKEGKLEPLTKARGMKKAIREIIKYMKEDNYHGGEVIIDHCENEKDAATI KEKILAEYPDAQITIRPMHGLCSFYAEEGGIMVGFHE >gi|227862993|gb|ACKR01000029.1| GENE 4 3187 - 3762 389 191 aa, chain - ## HITS:1 COG:SA0415 KEGG:ns NR:ns ## COG: SA0415 COG0671 # Protein_GI_number: 15926134 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Staphylococcus aureus N315 # 35 179 56 204 224 65 34.0 4e-11 MNNYFVLLLSAVILLWLIFNIKNSRRFNLFDHWLHHQLVKRHDGYSWQVIAFINDPKLMV VWDVLLAGLLLNEERNLTALWVLGTLGFADISGIILKKLIRRQRPLMHSDKEDGYSFPSG HVLGATTMGLIVLQLFAKDLGTGFVIVVVALWAMVIFSRLSLKAHYPSDVLGATSLAIVC FSISQQLFLAI >gi|227862993|gb|ACKR01000029.1| GENE 5 3866 - 4843 1297 325 aa, chain - ## HITS:1 COG:BS_yxeI KEGG:ns NR:ns ## COG: BS_yxeI COG3049 # Protein_GI_number: 16081005 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Penicillin V acylase and related amidases # Organism: Bacillus subtilis # 1 306 1 309 328 169 31.0 5e-42 MCTSIIFSPQDHYFGRNLDLEVTFGQQVVVTPRNYVFNFRKMPEMKQHYAMVGIALDAGD YPLYFDAANEKGLGMAGLNYPDNATYYDVVDGKDNIASFEFIPWILGQCETVADAKKLLE KINIVDINFSDKMQASPLHWLIADKTGVSIVVETDKDGMHVYDNPVGCLTNNPQFSSQLF NLNNYADVSPAMPKNNFSSKVAMNGYSRGLGSRNLPGGMDSESRFVRVAFNKFNAPVGKT EEENVDNYFHILHSVEQQKGLDQVGPDAFEYTIYSDGTNLDKGIFYYTTYTNKQINVVDM NKEDLDSAKLITYDMLTKPTFNHQN >gi|227862993|gb|ACKR01000029.1| GENE 6 5248 - 6279 1004 343 aa, chain + ## HITS:1 COG:lin2251 KEGG:ns NR:ns ## COG: lin2251 COG2855 # Protein_GI_number: 16801315 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 4 342 5 331 335 199 37.0 5e-51 MTNIIKTKSFWLAAGMTLFCSVAGIFLTKLPYVNLIGALVIALLLGIALQVTPQSVQTEA KSGMGFISNKFLRLGIILLGFRLNLTKLADAGVKTILVAAFAVSGTIVLTYWLSRKFGAE DELAILSACGCGVCGAAAVMGVSPQIETTDEERKRENEVLAVAVVCVMGTMFTLLEIMLK PLLGLTDTQYGVVAGGSLHEIAHAVAAGSAFGEISLDSSLIMKLSRVLLLAPVALIVGYW YQKRLVTESEAEHTKAPKKLPIPWFLGGFILTSIIGTFLPLSAQTLDLLVQAAYVFLGMA MAALGISVNFKVIFKRGGAVFGAAAISSTCLLVFMIIMSKIFF >gi|227862993|gb|ACKR01000029.1| GENE 7 6332 - 6550 280 72 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1084 NR:ns ## KEGG: FI9785_1084 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 72 81 152 152 118 76.0 5e-26 MDYCGFSIRGTIKNVDHLYLDEIFAKNPYLNEIYADDLEGAKKDLRVLEITPITAGYLDY RTKPVFMRNFKF >gi|227862993|gb|ACKR01000029.1| GENE 8 6504 - 6791 284 95 aa, chain - ## HITS:1 COG:no KEGG:LJ1123 NR:ns ## KEGG: LJ1123 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 77 1 77 152 125 74.0 5e-28 MVDILTKQTTNQEFLDFAVEQVHNADIVTTHAGEPSAQVCDLLLNKNGKLYIATSSQNPF FKDLIAQPKVIVDGYKGGRNDGLLRFFNSWYNQKC >gi|227862993|gb|ACKR01000029.1| GENE 9 6963 - 8864 1708 633 aa, chain + ## HITS:1 COG:L63697 KEGG:ns NR:ns ## COG: L63697 COG2217 # Protein_GI_number: 15673984 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 2 617 1 616 625 510 48.0 1e-144 MIKVQRFFIKYKKQILLLNTILLLLAEGSKWLLHLNLPYQLLMLVVGIIGVIPIVLTAIS SIKVKLISIDVLVSLAVLGAFIIGEFNEAAIVTWLFMLGDFLEEVTLKKTRSAISDLTKM APTTALVMQDDGSTKEEDVDFIDPGTRILVKTGDQIPVDGKIVSGSGYLNEASINGESSL ANKKIGNQVYAGTILEDGTLTIETIAAGEDTTFGKIIEMVEEAQDTKSHAEKLINRFSKY YTPAVLVIAIIVGLITRDLKLAITVMVLGCPGALIIGVPVSTVAGIGNGAKNGIIFKGSQ VMDQTRKIDEIAFDKTGTLTVGHPEVSAIKILKGQRNEIIRLAAQIEQQSNHPLAQAIAK LDNQASDVIKVETVKGKGLIATISGEKYYLGNQNLITENTHLNQELLHTINHLSNLGNSI VVFANADQSQLAVFGIKDQLRPEAKIALTRLKKLGVKKLVMLSGDNFKTAKQVAAELPID EVYGEMLPADKAAFVKKEQEKGYHVAFIGDGINDSPALANADVAIAIGSGTDVAIDVSDI VLVKNDLRKVSYAIDLAKKTVLNMNENIAIALLTVLLLFIGLFAGYVEMASGMFIHEFSI LVVILNGMRLIRFKQKLDHHQVSKKQIDVALNM >gi|227862993|gb|ACKR01000029.1| GENE 10 8890 - 9120 374 76 aa, chain + ## HITS:1 COG:L134080 KEGG:ns NR:ns ## COG: L134080 COG2608 # Protein_GI_number: 15674047 # Func_class: P Inorganic ion transport and metabolism # Function: Copper chaperone # Organism: Lactococcus lactis # 1 75 1 75 75 60 42.0 9e-10 MEKVMMKLAGMTCPSCLTKIEKAVDNLDGTDQIKVMFNAGKLKFTMDPDKVKAVDVKAAI EKMGYEVQGIKEKELN Prediction of potential genes in microbial genomes Time: Wed May 25 06:13:04 2011 Seq name: gi|227862915|gb|ACKR01000030.1| Lactobacillus crispatus JV-V01 contig00031, whole genome shotgun sequence Length of sequence - 49268 bp Number of predicted genes - 74, with homology - 72 Number of transcription units - 10, operones - 9 average op.length - 8.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 73 - 115 5.1 1 1 Op 1 . - CDS 120 - 1268 917 ## COG0582 Integrase - Term 1304 - 1344 2.7 2 1 Op 2 . - CDS 1355 - 1687 356 ## gi|227877413|ref|ZP_03995481.1| hypothetical protein HMPREF0506_0482 3 1 Op 3 . - CDS 1701 - 2294 795 ## LJ0289 Lj965 prophage superinfection immunity protein 4 1 Op 4 . - CDS 2359 - 2757 393 ## gi|227877415|ref|ZP_03995483.1| conserved hypothetical protein 5 1 Op 5 . - CDS 2767 - 3114 422 ## COG1396 Predicted transcriptional regulators - Prom 3144 - 3203 4.9 + Prom 3185 - 3244 7.3 6 2 Op 1 . + CDS 3285 - 3494 215 ## gi|227877417|ref|ZP_03995485.1| conserved hypothetical protein 7 2 Op 2 . + CDS 3529 - 4272 479 ## COG3645 Uncharacterized phage-encoded protein 8 2 Op 3 . + CDS 4285 - 4503 227 ## gi|227877419|ref|ZP_03995487.1| hypothetical protein HMPREF0506_0488 9 2 Op 4 . + CDS 4500 - 4667 232 ## gi|227877420|ref|ZP_03995488.1| hypothetical protein HMPREF0506_0489 10 2 Op 5 . + CDS 4738 - 4914 166 ## gi|262046635|ref|ZP_06019596.1| predicted protein 11 2 Op 6 . + CDS 4915 - 5082 207 ## + Term 5087 - 5131 -0.5 - Term 4966 - 5006 5.8 12 3 Tu 1 . - CDS 5217 - 5564 115 ## gi|227877424|ref|ZP_03995492.1| hypothetical protein HMPREF0506_0493 - Prom 5605 - 5664 6.4 + Prom 5614 - 5673 5.0 13 4 Op 1 . + CDS 5723 - 6022 190 ## gi|227877425|ref|ZP_03995493.1| hypothetical protein HMPREF0506_0494 14 4 Op 2 . + CDS 6027 - 6272 174 ## gi|227877426|ref|ZP_03995494.1| hypothetical protein HMPREF0506_0495 15 4 Op 3 . + CDS 6289 - 6456 61 ## 16 4 Op 4 . + CDS 6526 - 6891 401 ## gi|227877427|ref|ZP_03995495.1| hypothetical protein HMPREF0506_0496 17 4 Op 5 . + CDS 6894 - 7772 925 ## LJ1450 Lj928 prophage replication protein 18 4 Op 6 . + CDS 7775 - 8560 952 ## LJ0299 Lj965 prophage replication protein 19 4 Op 7 . + CDS 8562 - 9296 204 ## MCCL_1540 hypothetical protein 20 4 Op 8 . + CDS 9293 - 9556 218 ## gi|227877431|ref|ZP_03995499.1| hypothetical protein HMPREF0506_0500 + Prom 9569 - 9628 4.0 21 5 Op 1 . + CDS 9663 - 9920 311 ## gi|227877432|ref|ZP_03995500.1| hypothetical protein HMPREF0506_0501 22 5 Op 2 . + CDS 9935 - 10363 352 ## gi|227877433|ref|ZP_03995501.1| hypothetical protein HMPREF0506_0502 23 5 Op 3 . + CDS 10366 - 10560 224 ## gi|227877434|ref|ZP_03995502.1| hypothetical protein HMPREF0506_0503 24 5 Op 4 . + CDS 10544 - 10720 100 ## gi|227877435|ref|ZP_03995503.1| hypothetical protein HMPREF0506_0504 25 5 Op 5 . + CDS 10707 - 11117 263 ## gi|227877436|ref|ZP_03995504.1| hypothetical protein HMPREF0506_0505 26 5 Op 6 . + CDS 11101 - 11487 370 ## FI9785_823 hypothetical protein 27 5 Op 7 . + CDS 11513 - 11794 154 ## gi|227877438|ref|ZP_03995506.1| hypothetical protein HMPREF0506_0507 28 5 Op 8 . + CDS 11877 - 12401 481 ## LGAS_0597 phage related protein + TRNA 13609 - 13681 60.5 # Gln TTG 0 0 + TRNA 13783 - 13855 48.0 # Asp GTC 0 0 + TRNA 13985 - 14046 45.2 # Ser CGA 0 0 + TRNA 14162 - 14232 24.4 # Pseudo CCA 0 0 + Prom 14159 - 14218 78.0 29 6 Op 1 . + CDS 14307 - 14762 455 ## gi|262046872|ref|ZP_06019832.1| predicted protein 30 6 Op 2 . + CDS 14763 - 14948 66 ## gi|227877442|ref|ZP_03995510.1| hypothetical protein HMPREF0506_0511 31 6 Op 3 . + CDS 14936 - 15184 199 ## gi|227877443|ref|ZP_03995511.1| hypothetical protein HMPREF0506_0512 + Prom 15324 - 15383 3.0 32 6 Op 4 . + CDS 15427 - 15744 311 ## gi|227877445|ref|ZP_03995513.1| hypothetical protein HMPREF0506_0514 + Term 15864 - 15929 10.1 33 7 Op 1 . - CDS 16121 - 16513 466 ## COG1598 Uncharacterized conserved protein - Term 16529 - 16559 1.2 34 7 Op 2 . - CDS 16562 - 16741 214 ## gi|227877447|ref|ZP_03995515.1| conserved hypothetical protein - Prom 16921 - 16980 4.1 35 8 Op 1 . + CDS 16839 - 17384 532 ## COG3728 Phage terminase, small subunit 36 8 Op 2 1/0.000 + CDS 17377 - 18831 1072 ## COG5410 Uncharacterized protein conserved in bacteria 37 8 Op 3 2/0.000 + CDS 18844 - 20229 1199 ## COG3567 Uncharacterized protein conserved in bacteria 38 8 Op 4 . + CDS 20216 - 21019 648 ## COG2369 Uncharacterized protein, homolog of phage Mu protein gp30 39 8 Op 5 . + CDS 21030 - 21386 354 ## gi|227877452|ref|ZP_03995520.1| hypothetical protein HMPREF0506_0521 40 8 Op 6 . + CDS 21386 - 22597 1038 ## COG3566 Uncharacterized protein conserved in bacteria 41 8 Op 7 . + CDS 22597 - 23133 838 ## gi|227877454|ref|ZP_03995522.1| conserved hypothetical protein 42 8 Op 8 . + CDS 23148 - 24107 1097 ## COG4834 Uncharacterized protein conserved in bacteria 43 8 Op 9 . + CDS 24124 - 24510 426 ## gi|227877456|ref|ZP_03995524.1| hypothetical protein HMPREF0506_0525 44 8 Op 10 . + CDS 24582 - 25178 593 ## Amet_0423 hypothetical protein 45 8 Op 11 . + CDS 25188 - 25607 412 ## gi|262046608|ref|ZP_06019569.1| predicted protein 46 8 Op 12 . + CDS 25570 - 26130 185 ## gi|262046607|ref|ZP_06019568.1| predicted protein 47 8 Op 13 . + CDS 26194 - 27138 1128 ## EF1469 hypothetical protein 48 8 Op 14 . + CDS 27145 - 27468 119 ## EF1469 hypothetical protein 49 8 Op 15 . + CDS 27483 - 27914 540 ## EF1470 hypothetical protein 50 8 Op 16 . + CDS 27973 - 28419 608 ## gi|227877463|ref|ZP_03995531.1| hypothetical protein HMPREF0506_0532 51 8 Op 17 . + CDS 28391 - 28636 154 ## gi|227877464|ref|ZP_03995532.1| hypothetical protein HMPREF0506_0533 52 8 Op 18 . + CDS 28682 - 34138 6276 ## COG5283 Phage-related tail protein 53 8 Op 19 . + CDS 34150 - 35160 794 ## gi|227877466|ref|ZP_03995534.1| possible flagellum-specific muramidase 54 8 Op 20 . + CDS 35162 - 35575 437 ## gi|227877467|ref|ZP_03995535.1| hypothetical protein HMPREF0506_0536 55 8 Op 21 . + CDS 35572 - 36642 1094 ## LVIS_1085 hypothetical protein 56 8 Op 22 . + CDS 36656 - 37192 517 ## gi|227877469|ref|ZP_03995537.1| hypothetical protein HMPREF0506_0538 57 8 Op 23 . + CDS 37185 - 37568 379 ## gi|227877470|ref|ZP_03995538.1| conserved hypothetical protein 58 8 Op 24 . + CDS 37519 - 38745 1149 ## COG3299 Uncharacterized homolog of phage Mu protein gp47 59 8 Op 25 . + CDS 38735 - 39583 702 ## LVIS_1081 hypothetical protein 60 8 Op 26 . + CDS 39612 - 40679 1128 ## gi|227877473|ref|ZP_03995541.1| hypothetical protein HMPREF0506_0542 61 8 Op 27 . + CDS 40695 - 42839 1568 ## gi|227877474|ref|ZP_03995542.1| conserved hypothetical protein 62 8 Op 28 . + CDS 42870 - 43286 327 ## gi|227877475|ref|ZP_03995543.1| hypothetical protein HMPREF0506_0544 63 8 Op 29 . + CDS 43280 - 43648 345 ## gi|227877476|ref|ZP_03995544.1| hypothetical protein HMPREF0506_0545 64 8 Op 30 . + CDS 43694 - 44095 211 ## gi|227877477|ref|ZP_03995545.1| hypothetical protein HMPREF0506_0546 65 8 Op 31 . + CDS 44092 - 44514 397 ## gi|227877478|ref|ZP_03995546.1| hypothetical protein HMPREF0506_0547 + Term 44551 - 44586 6.0 + Prom 44517 - 44576 2.0 66 9 Op 1 . + CDS 44598 - 45161 816 ## LGAS_0627 phage related protein 67 9 Op 2 . + CDS 45180 - 45362 368 ## gi|227877480|ref|ZP_03995548.1| hypothetical protein HMPREF0506_0549 68 9 Op 3 . + CDS 45331 - 45720 126 ## gi|262046589|ref|ZP_06019550.1| predicted protein 69 9 Op 4 . + CDS 45731 - 45952 88 ## gi|227877482|ref|ZP_03995550.1| hypothetical protein HMPREF0506_0551 70 9 Op 5 . + CDS 45936 - 46169 294 ## gi|227877483|ref|ZP_03995551.1| hypothetical protein HMPREF0506_0552 71 9 Op 6 . + CDS 46169 - 46564 499 ## gi|227877484|ref|ZP_03995552.1| hypothetical protein HMPREF0506_0553 72 9 Op 7 . + CDS 46651 - 47772 1130 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) + Term 47822 - 47874 14.3 + Prom 48239 - 48298 11.7 73 10 Op 1 . + CDS 48348 - 48488 95 ## gi|227877487|ref|ZP_03995555.1| hypothetical protein HMPREF0506_0556 + Term 48492 - 48539 7.1 + Prom 48545 - 48604 7.2 74 10 Op 2 . + CDS 48664 - 48846 195 ## gi|227877488|ref|ZP_03995556.1| conserved hypothetical protein + Term 48902 - 48958 17.1 Predicted protein(s) >gi|227862915|gb|ACKR01000030.1| GENE 1 120 - 1268 917 382 aa, chain - ## HITS:1 COG:SPy2122 KEGG:ns NR:ns ## COG: SPy2122 COG0582 # Protein_GI_number: 15675872 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Streptococcus pyogenes M1 GAS # 8 371 2 368 381 122 27.0 8e-28 MPRRKDNEIYKYKLKSGKVKYGFKTYIGTDPETGKAVKPSRQGFDSYKEAEAAKTKLKEE GPSKFTHKKEQKENRKTVQEVYEIWLEVYRADVRGSTLRTRKSNWKNNIEKEFGGVYIDG IDINHLQSFATKLAETHINYRSILNLLHRVIKYAILRDWCDRDPFDKIVMPKKTKAKSKH PANNFYSLSELKTFLECAKKYKEKYYVYFMTVGNLGCRPGEALALKWKNIDFKNKEIFIQ HSISTDENGNKIYGPTKTPASVRKVPLSDQLAIVLKEYKEETIYKKGNDFIFHKDNGDFY ERSAPDHWITTLYNNYPLRRITPHGFRHTLATLLNNGKNNANIKDIQYLLGHKKASTTMD TYSHFTKENEEHVAESINKLDI >gi|227862915|gb|ACKR01000030.1| GENE 2 1355 - 1687 356 110 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227877413|ref|ZP_03995481.1| ## NR: gi|227877413|ref|ZP_03995481.1| hypothetical protein HMPREF0506_0482 [Lactobacillus crispatus JV-V01] # 1 110 1 110 110 191 100.0 1e-47 MKHRFLVAALASVMLASSTGAVIAPSHPVQAISKYSHHWHWVKVTKETPIYKVKVGRYMY QSKLTHKTYIEKGSDLKVMYSGHDYPWRVYGGWRGHWVALRQSANWFKNE >gi|227862915|gb|ACKR01000030.1| GENE 3 1701 - 2294 795 197 aa, chain - ## HITS:1 COG:no KEGG:LJ0289 NR:ns ## KEGG: LJ0289 # Name: not_defined # Def: Lj965 prophage superinfection immunity protein # Organism: L.johnsonii # Pathway: not_defined # 1 197 1 174 174 113 44.0 4e-24 MAKEIKGEDGKTYVVKEKKPWYKRWWVWVIIVIVAIFIAGGALSDDDDDDSDSGSAKTEQ TAKKKPASHKKSAKTESSTQSKESKPKESKPKVPEEYKNALATAEEYNEDQPMSKAGLLD QLTSKDGEGFTQAAGEYAVNHIQANWNENALKCAKEYEKTEHLSRADVQDQLSGSVDDGG EGFTPEQVQYAMDHLPK >gi|227862915|gb|ACKR01000030.1| GENE 4 2359 - 2757 393 132 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227877415|ref|ZP_03995483.1| ## NR: gi|227877415|ref|ZP_03995483.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 132 4 135 135 227 100.0 2e-58 MDSNLKRLLKRNYLGVAYLPIHGKGYLVRTKGNKKDYIIVNENLSDEETEKVILHEIGHY EHDKEVLGSYKHNLRSRAISEHEANKFMIHQEIKSYINQGYDAININYVNLADSLGTKDY FQVKEELEKYCE >gi|227862915|gb|ACKR01000030.1| GENE 5 2767 - 3114 422 115 aa, chain - ## HITS:1 COG:lin1230 KEGG:ns NR:ns ## COG: lin1230 COG1396 # Protein_GI_number: 16800299 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 112 1 123 131 70 34.0 9e-13 MSVFGNRLKTMRENAGWTKTYVANRLHLPLTTYANYEYGKREPDINTIGAISTLFNTTND YLMGKTDDPEPNPSNLSSDDLAEMLNNVRSYNGKPFDEHDKELLTTFLKGLYADK >gi|227862915|gb|ACKR01000030.1| GENE 6 3285 - 3494 215 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877417|ref|ZP_03995485.1| ## NR: gi|227877417|ref|ZP_03995485.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 69 1 69 69 127 100.0 2e-28 MASVLKDNARALAKQYLRDHGIKQSWLADKLRISEPTLSGRLNGRYKFDADFAVAFSKAL GISPDIFLK >gi|227862915|gb|ACKR01000030.1| GENE 7 3529 - 4272 479 247 aa, chain + ## HITS:1 COG:lin1738_2 KEGG:ns NR:ns ## COG: lin1738_2 COG3645 # Protein_GI_number: 16800806 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Listeria innocua # 120 244 27 151 152 97 41.0 2e-20 MEELMKVQVKNDRQLVSARDLHKGLGLKGRFSRWFKTNSELFTENEDFYKCTSSTVVNNG AVRELDDYLLTIEMAKQLAMMARTEKSKLYREYFLDLERKWNSPEMVMHRALEFSNARIK QLKLENKNLSIQLEESNKKASYLDVILGTPDLLATTQIAADYGYSAMAFNKLLKSVGIQH KVNGQWILYKAYMGKGYVASKAFTFQDHRGRDRSRTTTYWTQAGRKLIYDVLKDNDILPL IERDDIA >gi|227862915|gb|ACKR01000030.1| GENE 8 4285 - 4503 227 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877419|ref|ZP_03995487.1| ## NR: gi|227877419|ref|ZP_03995487.1| hypothetical protein HMPREF0506_0488 [Lactobacillus crispatus JV-V01] # 1 72 1 72 72 129 100.0 7e-29 MNCYKNIREELEALNELNNSKTEFGMVKEFDGNGGVTRPATIKDLQDLNSEIIASICDQL GMSDICLGGNKK >gi|227862915|gb|ACKR01000030.1| GENE 9 4500 - 4667 232 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877420|ref|ZP_03995488.1| ## NR: gi|227877420|ref|ZP_03995488.1| hypothetical protein HMPREF0506_0489 [Lactobacillus crispatus JV-V01] # 1 55 1 55 55 76 100.0 6e-13 MTILAAMSTKELWSKLCDLLIQRMALDITKEEWEKLTEQTNKIDAELKRRGELLS >gi|227862915|gb|ACKR01000030.1| GENE 10 4738 - 4914 166 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|262046635|ref|ZP_06019596.1| ## NR: gi|262046635|ref|ZP_06019596.1| predicted protein [Lactobacillus crispatus MV-3A-US] # 1 58 31 88 88 102 100.0 1e-20 MRRTRDCEHSPYKKAVIHDGARRLYYRLELWDKFMEYRTDKYYEEIYGIESIRDRSVI >gi|227862915|gb|ACKR01000030.1| GENE 11 4915 - 5082 207 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEKFSPEQREEVRKIVREEIKKANMQSISASKVAEITKKEIEKMGAEFGSDTTIY >gi|227862915|gb|ACKR01000030.1| GENE 12 5217 - 5564 115 115 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227877424|ref|ZP_03995492.1| ## NR: gi|227877424|ref|ZP_03995492.1| hypothetical protein HMPREF0506_0493 [Lactobacillus crispatus JV-V01] # 1 115 24 138 138 199 99.0 4e-50 MRELEIKTKHFQNSQDKISTLNDLVTNFVAAANVLNTYEQTGGWQLKANARNQFVKSGSK LLPYLSPDYQKLMQDWLKLSQIDDKSAWFSITKHINNESVNLLNDVKKNAYSKIN >gi|227862915|gb|ACKR01000030.1| GENE 13 5723 - 6022 190 99 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877425|ref|ZP_03995493.1| ## NR: gi|227877425|ref|ZP_03995493.1| hypothetical protein HMPREF0506_0494 [Lactobacillus crispatus JV-V01] # 1 99 1 99 99 159 100.0 4e-38 MQLLDEENLTKFVRSIVISMKPELKSNLDKKDVKKIIELSSREWLNVRESAKYLGVSDTT FRSWRKKYKIPSRTIEGITRWKKSDLDKFWKTRGVKGYL >gi|227862915|gb|ACKR01000030.1| GENE 14 6027 - 6272 174 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877426|ref|ZP_03995494.1| ## NR: gi|227877426|ref|ZP_03995494.1| hypothetical protein HMPREF0506_0495 [Lactobacillus crispatus JV-V01] # 1 81 1 81 81 139 100.0 4e-32 MTKKEIERKYGKTKLDHALSYFCMAFEKILEFLSIIFVPLLVVQQTVLYGENHPDVVLPA LSIVTALVIVIGALVIKHNKK >gi|227862915|gb|ACKR01000030.1| GENE 15 6289 - 6456 61 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEQIFKYFVSRRQAHFLSAVQQNCLANSNCLHVASGSFSELPAYIKSFLGIKKAL >gi|227862915|gb|ACKR01000030.1| GENE 16 6526 - 6891 401 121 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877427|ref|ZP_03995495.1| ## NR: gi|227877427|ref|ZP_03995495.1| hypothetical protein HMPREF0506_0496 [Lactobacillus crispatus JV-V01] # 1 121 1 121 121 213 100.0 3e-54 MLYSQEQINRKKELEELEIQAENDPDTLVVQLPEGREALIGKSADDFVNGYKSAAQFLKG RLNHYNGDLNKLADEMDYNDVSPNHFDFILDLSNYGDDLLKFIEDSYNCQKLTSYLGMEE Y >gi|227862915|gb|ACKR01000030.1| GENE 17 6894 - 7772 925 292 aa, chain + ## HITS:1 COG:no KEGG:LJ1450 NR:ns ## KEGG: LJ1450 # Name: not_defined # Def: Lj928 prophage replication protein # Organism: L.johnsonii # Pathway: not_defined # 16 288 19 294 297 140 34.0 5e-32 MNENQLIKLDEKAVAFPVNFAPAQIDFSGYNQMKDQIDQLHESLENYDVTQDNLKDAKST RAKLNKLTKAIKARKVEIKKKAEAPVKDFNDKVESLVAKIDDSSAKISAGIKVYEDKAKA ERHENNLEHIKTMCEFAEIDPTKIKYQSSWDNKSYSKTKFETEVDQQIALIQQEQAQLAD NIKIISEKAESLGLPADNWIKALDNNPLSFVLNTMSEYKEDLDAVSEAQKKTKLNELNNL KKQGDKYVDPETGEIKDKVISLKLEVKGTPWQMKQLQSFLKDNGIEYQGLEG >gi|227862915|gb|ACKR01000030.1| GENE 18 7775 - 8560 952 261 aa, chain + ## HITS:1 COG:no KEGG:LJ0299 NR:ns ## KEGG: LJ0299 # Name: not_defined # Def: Lj965 prophage replication protein # Organism: L.johnsonii # Pathway: not_defined # 1 256 1 261 278 205 45.0 2e-51 MQLLESPADWIGQICFKAISGLKPEDALKAKLALMSAFVNVQRKLKQPSKDKQGYGYKYA DLNGVIKAIQEASSDEDIAYIQQPVTDGGKTGIHNYLLNSKGAIFDFGSYMLDIGSPNPQ EYGKALTYARRYSISAIYGIASEDDTDAKEFNSKPDYMTPKELKGMTINYDGKRKDLTEV FAMAMAGDELAKQVIKDKGNSVNAKIAIKSISAIYEFSKGLLKDRDKEKSKQDAEDQKIK EIVDGKKDSTKKKDPFAKLGE >gi|227862915|gb|ACKR01000030.1| GENE 19 8562 - 9296 204 244 aa, chain + ## HITS:1 COG:no KEGG:MCCL_1540 NR:ns ## KEGG: MCCL_1540 # Name: not_defined # Def: hypothetical protein # Organism: M.caseolyticus # Pathway: not_defined # 1 138 1 154 318 124 52.0 3e-27 MNQPSYYSIMPAYVRYDKDLKPNEKLLYSEITALSNKFGYCTASNNYFAPLYDVSKETVS RWISHLKKKGYIQVEIIRAADKTVQQRRIYVSVEGEVLTKRSIGYCQKDQDPIDENVKEN ITRDNTTSNNINSSSNKSKPSPQNETVDNSKDKSEEEETKINSRMNKLWFTIRNYNKTFN QHLRPTLRQLKQIRLKVSMLSDDDFESLSKVYDQRVSAYLVNNPIGYLITMLNDEIKIER HYKK >gi|227862915|gb|ACKR01000030.1| GENE 20 9293 - 9556 218 87 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877431|ref|ZP_03995499.1| ## NR: gi|227877431|ref|ZP_03995499.1| hypothetical protein HMPREF0506_0500 [Lactobacillus crispatus JV-V01] # 1 87 1 87 87 172 100.0 7e-42 MNRLRKLITSADQLVNGKQYELVQGEITIKTTFSEVVHPEPQPGYWTTDDIACAQFIGRK GIGCIVEEDRQELFDGLTEIGVKIYEQ >gi|227862915|gb|ACKR01000030.1| GENE 21 9663 - 9920 311 85 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877432|ref|ZP_03995500.1| ## NR: gi|227877432|ref|ZP_03995500.1| hypothetical protein HMPREF0506_0501 [Lactobacillus crispatus JV-V01] # 1 85 1 85 85 114 100.0 2e-24 MKEKQFKEHYLKILNGAAIEDFEKREKIFRTEIQALADIDGISFEEAFEKIESIFIDQYF EEDDEKVAEQLQKAASGLMMMEFLL >gi|227862915|gb|ACKR01000030.1| GENE 22 9935 - 10363 352 142 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877433|ref|ZP_03995501.1| ## NR: gi|227877433|ref|ZP_03995501.1| hypothetical protein HMPREF0506_0502 [Lactobacillus crispatus JV-V01] # 1 142 7 148 148 271 100.0 1e-71 MKIKRVKEIAYGDQIAVELDINGKWQKGYGTIVVIKGYKFIFVPRKYSNGINIEAYSLDS LKLFDSKPMSFITALLQCATKEGFMEATAPLAIRISEQLNKMKSLNGWKEIFRGEYLSAI AECGARSEKERRLLKEFDSKGV >gi|227862915|gb|ACKR01000030.1| GENE 23 10366 - 10560 224 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877434|ref|ZP_03995502.1| ## NR: gi|227877434|ref|ZP_03995502.1| hypothetical protein HMPREF0506_0503 [Lactobacillus crispatus JV-V01] # 1 64 3 66 66 90 100.0 2e-17 MSKTIRVQWEYPDFANQLGDENYEYFEVDDDATPEEIQDEAEEIAFEHFRWSFWDVTKEH ENER >gi|227862915|gb|ACKR01000030.1| GENE 24 10544 - 10720 100 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877435|ref|ZP_03995503.1| ## NR: gi|227877435|ref|ZP_03995503.1| hypothetical protein HMPREF0506_0504 [Lactobacillus crispatus JV-V01] # 1 58 1 58 58 107 100.0 2e-22 MKMKDENGRDVKLGLEEARRIMATDYCVRSDLALCGEFFNEYGMLPQEYIKEYGNESN >gi|227862915|gb|ACKR01000030.1| GENE 25 10707 - 11117 263 136 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877436|ref|ZP_03995504.1| ## NR: gi|227877436|ref|ZP_03995504.1| hypothetical protein HMPREF0506_0505 [Lactobacillus crispatus JV-V01] # 1 136 1 136 136 245 100.0 5e-64 MKVIDKRTKKTNEDYKYGDILMCWDDDPEKVYVAWVVECTKFAPPLLDSSWSLKTEVSKL DEPWQKTAGYGVVIGTNGLEVSKQIRKFEIQLVHQLGLSMDLDYQYNRIISCDPKLLLTL GELLSGFWGDDDEKND >gi|227862915|gb|ACKR01000030.1| GENE 26 11101 - 11487 370 128 aa, chain + ## HITS:1 COG:no KEGG:FI9785_823 NR:ns ## KEGG: FI9785_823 # Name: ps121 # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 15 122 3 110 111 135 59.0 6e-31 MRRMIRRKRRPMGLEHRIQLDIIAALTMHRCTVYRGNVGKIKMQDGRFFNTGLPNGFPDL FGWRWSDKQFYFIEVKAPKGRIRPDQLAFHQDLMHRKVIHGIARSVDDALKIVKEGLIGY GYPDYKEA >gi|227862915|gb|ACKR01000030.1| GENE 27 11513 - 11794 154 93 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877438|ref|ZP_03995506.1| ## NR: gi|227877438|ref|ZP_03995506.1| hypothetical protein HMPREF0506_0507 [Lactobacillus crispatus JV-V01] # 1 93 1 93 93 148 100.0 1e-34 MYFKLIMLVVAIYVCGLTAFSLGMILANKRKTWYLKVAQSFGIVCFGVISNLYILWMPHC KLFSALLGIVFVILPVLVCWSTLIFVPDLREDW >gi|227862915|gb|ACKR01000030.1| GENE 28 11877 - 12401 481 174 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0597 NR:ns ## KEGG: LGAS_0597 # Name: not_defined # Def: phage related protein # Organism: L.gasseri # Pathway: not_defined # 10 169 4 161 176 77 28.0 3e-13 MTDRAEQMALDDSLKVDARETARNVRNFLTFKFEHFQNYAGLNVSDLSVIDDSHLSSPKM DASGVSSHGGINHTESSFNRIMEAEQACKAIYKTIKNCRNGGRTPYQKILSEAYLQNMED YKIQQELGYEDSQYYIKKRQALCEFADRFEKWKDWYSIPYFKDLHIYRKNKNGV >gi|227862915|gb|ACKR01000030.1| GENE 29 14307 - 14762 455 151 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|262046872|ref|ZP_06019832.1| ## NR: gi|262046872|ref|ZP_06019832.1| predicted protein [Lactobacillus crispatus MV-3A-US] # 1 151 13 163 163 260 99.0 2e-68 MYHKKPDKPDKSLAKWVEEKNSKATPKRSGFWHESKYRPPEDDIKEAEIKQDEPELIIPI PKSVVPSIEDYESTFLHKEDQESMQNKTLVSKLTDERQHLQDDLLKIDNKIINPLGVSDY QVKLLKIQRNAMMTVVNVLDMRISDLSVEGD >gi|227862915|gb|ACKR01000030.1| GENE 30 14763 - 14948 66 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877442|ref|ZP_03995510.1| ## NR: gi|227877442|ref|ZP_03995510.1| hypothetical protein HMPREF0506_0511 [Lactobacillus crispatus JV-V01] # 1 61 1 61 61 97 100.0 3e-19 MTPEKYYELRKHYKLVKEAEHLVKYNTSNKVVDMIKFVAFKQKAGMMPQEYIEKYGDSWK D >gi|227862915|gb|ACKR01000030.1| GENE 31 14936 - 15184 199 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877443|ref|ZP_03995511.1| ## NR: gi|227877443|ref|ZP_03995511.1| hypothetical protein HMPREF0506_0512 [Lactobacillus crispatus JV-V01] # 1 82 1 82 82 166 100.0 3e-40 MEGLRHPLTQENKTIGEAVAHKHRRYRGVKNPLRGSLLERRIQRAIYCVENDVDKEFIDW FVADTGMQPQEFLDKWSKKLGI >gi|227862915|gb|ACKR01000030.1| GENE 32 15427 - 15744 311 105 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877445|ref|ZP_03995513.1| ## NR: gi|227877445|ref|ZP_03995513.1| hypothetical protein HMPREF0506_0514 [Lactobacillus crispatus JV-V01] # 1 105 1 105 105 184 100.0 1e-45 MGGRSSSFKSTKTGASYVRLRNQARQAATKAFDNNENIHKKFGEIEVKRVSKNRILVKGR NGQISTVVPDWNMTKDNMETNPRFKKAAFVNHYMSEEDINYLLPK >gi|227862915|gb|ACKR01000030.1| GENE 33 16121 - 16513 466 130 aa, chain - ## HITS:1 COG:SP1786 KEGG:ns NR:ns ## COG: SP1786 COG1598 # Protein_GI_number: 15901615 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 16 126 14 146 150 59 33.0 2e-09 MKKDKIVVFPIVITPTDDPKIKYTVNVPDLDRDTQGRTIAEAIDMGKDLIGTMSLVEDLP ESNAKIPKTKNNEIATLVTVNISEYKRKNDNRVVKKTLTIPNYLNEEGKEAGLNFSAILA DGIKAKLGIE >gi|227862915|gb|ACKR01000030.1| GENE 34 16562 - 16741 214 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227877447|ref|ZP_03995515.1| ## NR: gi|227877447|ref|ZP_03995515.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 59 1 59 59 98 100.0 1e-19 MVKRRDALKVLKENGWWFDRHGHNHDIYTNGHHSESIPRHGDLNKVTWEKIMKRNNLKG >gi|227862915|gb|ACKR01000030.1| GENE 35 16839 - 17384 532 181 aa, chain + ## HITS:1 COG:L36274 KEGG:ns NR:ns ## COG: L36274 COG3728 # Protein_GI_number: 15672009 # Func_class: L Replication, recombination and repair # Function: Phage terminase, small subunit # Organism: Lactococcus lactis # 6 119 1 114 147 82 44.0 4e-16 MAEQKLTIKQKKFADEYVKTGNATDAAIKAGYSEKYAHTNANKLLQNTTIKARIDAQMQK LEDDKIMKADEALKLITAIARGEETTTVETKDGFWLTVHPTITEKQRASEAILKRYPLSD MDKAQIKKAQAEAIKAQAEAQVAKAQAEQLHTVADKTREKMDKLSIDELRNLAKLAGEDD D >gi|227862915|gb|ACKR01000030.1| GENE 36 17377 - 18831 1072 484 aa, chain + ## HITS:1 COG:lin1732_1 KEGG:ns NR:ns ## COG: lin1732_1 COG5410 # Protein_GI_number: 16800800 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 20 307 23 309 310 262 47.0 1e-69 MIKLTAAEKNGIALAAKESLARRSYSDYFLLANPSMRMYPHTKLITDKLQKIANGEQHFY IISMPPQHGKSLTITKTFPSYYLMKYPDKHAMIVAYSQDLYSQFAASNRRAFSDWSGPLF NLKTGKNTAQQFNIVDHRGGFYATSILGGATGMSANLLIVDDPIKNAEEAGSPTIKDKIW NEWLLTFKPRLQRGGSVIVIMTRWQQDDLAGRLLDNSSFNWEEIKLPAIATGLGPGETDV LGRHNGDPLCPDLHSLDELLGNKHDMGSQKFTALYQQSPTIESGNIFKREWVKFYVPDRE TQIRLHLTDKDAKILPKHFDTSVQAWDATFKSKENDDFVAGQVWSKRGADLYLRPGWCHK RLSFTETLDAIRAMTRFYPDAVTKLVEDKANGPAIIDALKHEIPGIVAVSPGSDSKEARA ASVSPVWESGNIYVPHPKWRPEIEDWLEEIFAFPNAMHDDNVDSMVYAVKRLHDNHSRGP VIRY >gi|227862915|gb|ACKR01000030.1| GENE 37 18844 - 20229 1199 461 aa, chain + ## HITS:1 COG:lin1731 KEGG:ns NR:ns ## COG: lin1731 COG3567 # Protein_GI_number: 16800799 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 42 450 47 456 461 187 32.0 5e-47 MGLFSRRKSEPKKRTIVGDGIDLDPFTSYDNLGWRVVNDEQDYDALHNETKHNAIARRIV HKPAEDATRNGFRVIVEGDPERQKMYQRLHYDLKTTQALSQQLVYQREGGDGYITIGVNE NDDADSSKPLDPTTVEKVHFIHAFGQNHVDKVLSNDDPLSPNYGKEQAIVLRTQNAGYKV DPNGTQTPNTPRNTPRVIDQSRYWHIALDKSIDDETGTSILTRCQDQLKAMDIALESTGK MLREFTFKFYKSDQLMEEGDADFKRDKREISQVLNTEAMAFGHSQDSIEKVATPTGGIDL LYNFVWQQLSAACGIPKSVLTGEQAGTLAGASQDVINYYDSIKAIQTNLLKPEIEQITRI LMYANGDDPDQLDWKIVFNDLQTMDDKTNSEIFMNQANAYSSLISNGVLAPDEVHDMLAG QDTNPNPAMQTAGDSVDAETVKNIVDNYQKDKKRAEKHDDS >gi|227862915|gb|ACKR01000030.1| GENE 38 20216 - 21019 648 267 aa, chain + ## HITS:1 COG:lin1730 KEGG:ns NR:ns ## COG: lin1730 COG2369 # Protein_GI_number: 16800798 # Func_class: S Function unknown # Function: Uncharacterized protein, homolog of phage Mu protein gp30 # Organism: Listeria innocua # 5 264 4 254 469 135 30.0 1e-31 MTTHRRMPHTRYPRNLEDAYRRRIVRLVYQWRKVAMEYFNVYMGDYFKGGTQIVGDAPKK NNPTETEQQNVLHNLDAMGYTIKQATSDATIRKIAEQFVRTIDMFSYNNVAMQIRIAGIN PIRDSPELTKIFNARVAENVQLIKYMKDRYADSITGVISRAISNGDGTGVITKEIVKQTG MSVRHAALVANDQTGSALAKFNESRHKAAGAKDYVWQSMEDNRVRPKHQELDGTRQTYDD PTGGDDGQMPGEPINCRCVADPIFSFY >gi|227862915|gb|ACKR01000030.1| GENE 39 21030 - 21386 354 118 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877452|ref|ZP_03995520.1| ## NR: gi|227877452|ref|ZP_03995520.1| hypothetical protein HMPREF0506_0521 [Lactobacillus crispatus JV-V01] # 1 118 1 118 118 208 100.0 1e-52 MTDNKPLFGINSEKVTVDAPKTTKDAPEVAVNHEKTALNAQSTPKKEVKRVAKNGFDYTN CKTYTVKEGQTLLDVANEVLVAYQQLRYFNGLSKTNPVVKAGQVIYIPDQAINVPLGK >gi|227862915|gb|ACKR01000030.1| GENE 40 21386 - 22597 1038 403 aa, chain + ## HITS:1 COG:lin1728 KEGG:ns NR:ns ## COG: lin1728 COG3566 # Protein_GI_number: 16800796 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 357 3 324 369 151 34.0 2e-36 MITRYDSSTVSAITKDPITGYIHARNVPIARAGVFKYLKPDGTVRHEAKLPEDILSDSTV ASANNKPITDNHPENEAGQRILVDKSNTNTLMKGLTASNAHVDEADGTVRVDLTITNPDL INKVDNGKRQLSIGFQTQVVPQSGVYKNTEYDSVQKDITINHVAVVDVAREGPDISLDRS VVGDSAEMIGELDDFSKEKGQKPQMDFEKVRIGDQTIKVATDDADKLIKFDSDNSANQKR IDELNAQIKKLTDERDSLKSGNKQAENDRSEAQAKADSLEKELQGYRDKVEGDGLDKLVD QRMGLIDDVKSIVGDSFDPHGKSEKEMKIEAIKSVDGDSAEIDGKDDVYVNAYFNAVKNR KQSHFVGATVHDFKGDSAESNVSVNQMHENFYNLANKNKGGNK >gi|227862915|gb|ACKR01000030.1| GENE 41 22597 - 23133 838 178 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877454|ref|ZP_03995522.1| ## NR: gi|227877454|ref|ZP_03995522.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 178 1 178 178 318 100.0 6e-86 MAIPDGTMYHDGHLSAGTVERQYEVLTEVASADIPFGAGVSLVNGQAVTATKAPIYGVAV KRGYLDVDHFYEDDIEKDKWHPGEVLGVLTDGTINVPVNEDVDRGELATVDADGSFKPTT ADDAVGRFLSSADKGSTARLLVRTRFGGTTGGADPTKDDAHAIQPPETPTPASETKKN >gi|227862915|gb|ACKR01000030.1| GENE 42 23148 - 24107 1097 319 aa, chain + ## HITS:1 COG:lin1726 KEGG:ns NR:ns ## COG: lin1726 COG4834 # Protein_GI_number: 16800794 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 12 313 14 301 301 92 27.0 8e-19 MAQMGVATKEQLTYIDQTIYDPKTAPLVALQLFSTIKVYPIQMSYRYKVRSTKAMAQAYA NRGTDIPVVDEGFKEYEVPITQSALACEYSWMELQEAQAANVNLLADQAALVARGLAERR DRIIFNGMDIGPNTKIIGLTDTNTDVTGFQQLALDGDHALDKLAQDTEDGALKMRNVLRE AVQKITHLIGYANAKPTLLMPQAEIDLLDNPVSKLRPDITVRDMVSQYFSSIQAVPELEG QYWHAKNASKADKQKDMAIVCLTDEDIAQIPVAMEMTQLQQEYHDGVTKIPYVERHGGLA VRYPSAFVQITGINTPTAN >gi|227862915|gb|ACKR01000030.1| GENE 43 24124 - 24510 426 128 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877456|ref|ZP_03995524.1| ## NR: gi|227877456|ref|ZP_03995524.1| hypothetical protein HMPREF0506_0525 [Lactobacillus crispatus JV-V01] # 1 128 1 128 128 259 100.0 5e-68 MNTDDPVVPITALKNAAPKLTQSMSDDTLKELIHDATVNTLADGFPQPVDGKWNDITLTA IKYLALHLASMDTSAGQGILDEKVAVLERKYESKIGKDWLHSSVWGLYYYRLWKLFCGGS NRYGVVQH >gi|227862915|gb|ACKR01000030.1| GENE 44 24582 - 25178 593 198 aa, chain + ## HITS:1 COG:no KEGG:Amet_0423 NR:ns ## KEGG: Amet_0423 # Name: not_defined # Def: hypothetical protein # Organism: A.metalliredigens # Pathway: not_defined # 9 196 33 198 200 85 33.0 1e-15 MVVIGFWGNDRLIEIVSALEYGADIKPHKPDGWLIIPSKNDELGEDGLPMSSSEWDEKHP DQQLFRPGGKKGAHVLAVKDASSDTGFKIIFYLMKEVKIPSRPFLRKTSIEYEQKYIRLT QVGVQRVFEGRATGKGLLDKLGAVAVADIQHEMRRLYKPGNAPMTIDNKGFNNPLIGKHA GGQGGALINKITYKIIPK >gi|227862915|gb|ACKR01000030.1| GENE 45 25188 - 25607 412 139 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|262046608|ref|ZP_06019569.1| ## NR: gi|262046608|ref|ZP_06019569.1| predicted protein [Lactobacillus crispatus MV-3A-US] # 1 139 1 139 139 260 99.0 2e-68 MSFYMDVASMLDDYGVDIEVRKSDKPHTGKKELVGVFLMSDDQSTLIDEKTAEKRHEPVI PVNQLTSQLIQYLTGGTQTNADLMWLSSGKYYVHTMVNVPSQGGLFEVTNSSNYQDYSNL IIYELKGDDAHQHGNSTQR >gi|227862915|gb|ACKR01000030.1| GENE 46 25570 - 26130 185 186 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|262046607|ref|ZP_06019568.1| ## NR: gi|262046607|ref|ZP_06019568.1| predicted protein [Lactobacillus crispatus MV-3A-US] # 1 186 1 186 186 360 99.0 3e-98 MTHTNMEIQLKDNLLLTYIIQQLVKERLDCDLLYQNLVSDRPQYPFVTYSFIVPEQETTG DWLGMGRQYISHLQIDCHADNAIQAMNMANDLYSAFQSSVYRNYFEQADIDPQNFTNTSD RTVRVGTYYDYRFGFDCSFLVSNGGHVYSPDDLHFQAQPETEINTVQLSDAGDSEVISAN GKEKEQ >gi|227862915|gb|ACKR01000030.1| GENE 47 26194 - 27138 1128 314 aa, chain + ## HITS:1 COG:no KEGG:EF1469 NR:ns ## KEGG: EF1469 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 108 310 37 249 345 130 37.0 6e-29 MTVVKPSAIIGLGNLLILHEVDAGSSSTAPKPALADTGTGKDTPAKSDTGKTTGTTDGKA TDDGSKTINVPKITPVAPVTGVPDKLEPNDVLNGVLSRKTDPYTGAQYVEYATADAVGAY YDKTDPIYIKSDNYFMQEAASDRIAVLNYPKGKLADALKAFWYYNWAFMIFDKSQFTDTT PSDDAIIASNICEANKDHFLVLQATQPAAYVTFYAQNYTIGLIHDLSEPMDAALIGATAT LTVGLVTWKFRKLKGITADQITVQEKSAIDRVHAIAYIEVSGQGETSEGWVLSGDYIDSL HGDLWVKTNMGDKI >gi|227862915|gb|ACKR01000030.1| GENE 48 27145 - 27468 119 107 aa, chain + ## HITS:1 COG:no KEGG:EF1469 NR:ns ## KEGG: EF1469 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 98 257 344 345 73 43.0 2e-12 MQNTDKVPYDQRGINALAAICSQVLQQAYEQGIVLEQEVYDSNTGETQSTGKGDYSVTAT PRSAQSQKDLSARHYGGLSFRYHRSGAIHTVLVHGTVQSDTFTNSKA >gi|227862915|gb|ACKR01000030.1| GENE 49 27483 - 27914 540 143 aa, chain + ## HITS:1 COG:no KEGG:EF1470 NR:ns ## KEGG: EF1470 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 12 138 4 130 132 77 34.0 1e-13 MASFNSAETGLMAKYNANDTTLMVDGELMYGFATDTMISVAYDNDNVTVAQDPQGTAVAS INNKTGATLTVNLNETSPSNAKLTELANTRAEFPLDLRTSTVHQTATHCYISKMPDNTAA QNAGNRAWQIHALNLDTESLVGR >gi|227862915|gb|ACKR01000030.1| GENE 50 27973 - 28419 608 148 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877463|ref|ZP_03995531.1| ## NR: gi|227877463|ref|ZP_03995531.1| hypothetical protein HMPREF0506_0532 [Lactobacillus crispatus JV-V01] # 1 148 1 148 148 245 100.0 5e-64 MSEEIQNQNVNNNQSNEDKASQMATESKNLQDMMALIDKQEKSSEIASLTGKPTFLTINK GKKNEYTIEVIFPGVAKASSLRDDARTALGAIDQTYFMKNVAIKELIVRPKIYSLDWFDK RGGYDDAYNKILDWFQSSINGEGYTEED >gi|227862915|gb|ACKR01000030.1| GENE 51 28391 - 28636 154 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877464|ref|ZP_03995532.1| ## NR: gi|227877464|ref|ZP_03995532.1| hypothetical protein HMPREF0506_0533 [Lactobacillus crispatus JV-V01] # 1 81 1 81 81 159 100.0 8e-38 MGKATPKKISDLASDPATWLPQCLVMHGVPESWINHATLDQLRVMWEVVKKDLKYQTYLT AKDQARIMAKGIALAFGGEDS >gi|227862915|gb|ACKR01000030.1| GENE 52 28682 - 34138 6276 1818 aa, chain + ## HITS:1 COG:L25762_1 KEGG:ns NR:ns ## COG: L25762_1 COG5283 # Protein_GI_number: 15673370 # Func_class: S Function unknown # Function: Phage-related tail protein # Organism: Lactococcus lactis # 34 526 130 617 1437 159 27.0 5e-38 MAGRHVGIDIGVRVDNSVFDSVDRRIDKVKANAEQLNRVLSRTKMPDSAANGLDKLNRAS GETKTQIDRLANSYKQVGTNNNLNRAQSDLSGIADKAKKATESTDQLKQSMNRAHESSKA LGDMGSGFDRARGSSDRARESFDKTTGSSNKLKSGWDRLKGAGSALVQVGSSIATAMVPV AAAFMKANGEATKLADEYNVIKNLQETGGDSPRAARRNTREIQAENRRLSLRYGVDQNEL ARGSEQLLRRGYSGQQDLAAHKYFLQAARATNEDYNSIVNSAAPMLEQFGYKSRAGNSVR RMSKYTRDVLNKAAYVADLTSGDVGGESGFGESFKMMGSAAHSNGQTIDTMLGALGTLSN YGEEGSSAGTGMRQIITRLIKAPHSTAMLGALHDLGINPNSLYTRNGHLKQLGTIFEMLN RASRGKKSNRVSSDLQTLFGQTGFNDAQILMNHYGDMQHNVRESQNAARTGYISRLSRKN MSSLQNQLARTKQLATDMGMSFAKEVAPGISKALGYANKLLEAMRGMPKPVKTAAAYITG ILGTLGASKLASGFLKANFGIGNGKGIGAGIGRLLLGKETGVRPRDPVTGQYIKGSSRQG GLINALKGNSFGGMFKLGRVQPGELTGKALVGRRLLGGAVGVGTALDVGYQGFQAYKDRH NAAKRSVDIGGAVGTGAGAIIGGIFGGPIGAALGAQAGKLFGRIGGSAVNSFVHGWQRKK PPKNFWSLENLGWSTKDTFSKIGRWGGQVGKSMGRALGKAGSFVKKNGKQLALTAIAPWA GIPALLYKNNPKFRKWANSVGKTIQNGFKGAVKWVKDLPGNIHKGWNRAVEASHKFFKDL PKNLDKTKKSVGKWASQTGKNISRAWQRGKKATVNFVKGIPGNLAKGAKSVANWGSRTGR NIQKTWNKGVTGVKKFVGGIPGQLNRAHKSVSNWSGKVGNSIQSGWNKGKKAVGSFVSSI PGQLGKAYKAVKDWAGKVGNTIKDAWNNFWGKAGDIRKGITNNLKGFGNDLNRAAGGSGK AFKYEKIKSHATGGLIGSAHRALVGEAGPELAYRAGSNARLLGANGPAITKVRPGEHILN ARDTRKVMAGGLGRGLTLKGYATGNTKLGQTTKTVSKDYKKITDDATKSLKSLSKNNASS WSKINSQTAKYNSKNRANATKEYTGMRKSVDKQMNNMHDGVISTANSTSKGFGKAMGKMR SYAKDAMGDTIDQLNRGIKGIDKVLSQFGGNGSVIKTVHFAQGSDANGRLTQNTLSVVND ATSGPRQEALVSPSNELYFPHGDNVHLMIPRGWGVLNGTQTQEVARKRGIQHFAKGSGVS HSQLRKIASHALADPAKSFADMFTKNIKESGPVLQKGTVDLGKNASTHFGNPWSTAMWTV INNAIGDSTGKGGTREQFLKYAESTFAGVPYQMGAASKRLSDCSGMVMQALHKFDIDIGR TTVAMQNSSGVKYLGKSLNNTIPGDLVIFGHGTGAAGHVGIIKDPRRGTMFNETPPKARV TRIADDKGMGYGYYRVKGLHNAAPSHKVQKADKRLIALAKQELGHSAIKWIKDHLGDDFG SLGSFSIGGDLRDRARALAGGLKKLDPRATKNGIAAILGNWNFESGGLNPGAVNSSGGAS GLGQWLGGRLTNLKAYARRHGTSWKNAGTQLSFAVKGEGSDSAILRSVLEGHGSVASLAN KFSAEWERGGYNAQHVQGAMQVRKALGFAKGGNHYGSGTYLVGENGPELISTDGKARIDN HEQTKKKLGDLFDDLKVKKIKPIKVHRPNSPKPVINININGPISSTQDAHRVANIVRQEI AQVFENAGDEFGLDPTVY >gi|227862915|gb|ACKR01000030.1| GENE 53 34150 - 35160 794 336 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877466|ref|ZP_03995534.1| ## NR: gi|227877466|ref|ZP_03995534.1| possible flagellum-specific muramidase [Lactobacillus crispatus JV-V01] # 1 336 1 336 336 528 100.0 1e-148 MAKRKKMTADEKADQKVKYYQSLENKYQKRWRNSEQKGMDTYNKMKAAKDKKEKAKLKTR WQKITKVVGAENNARKHYQKLRKNAEDERDALHKQQGSLAAIAEKIAQHNAQFSIDPSSG NNEGHAAIFPSDGSAKEPVYISPSDNESEDTTSNVTSWPVDEGAPRADYVRVASKTVSVG GIITGRDRTEATEKYNRLKSWHNHHKTLTYLGDINYKHLVINDLQNTYSDLRDNLKVSIG FTFIYWAQVTTSTGKNVKKKTSKSSKRVAGSRNKKYTAITVKKGQTLLGLAKRYNTSVKW LQKVNHIKNPNRISTGEHLYVGKKVNKRAKGKIRVK >gi|227862915|gb|ACKR01000030.1| GENE 54 35162 - 35575 437 137 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877467|ref|ZP_03995535.1| ## NR: gi|227877467|ref|ZP_03995535.1| hypothetical protein HMPREF0506_0536 [Lactobacillus crispatus JV-V01] # 1 137 1 137 137 245 100.0 8e-64 MENYVPIDVDNLPDIFDIQLAGEVFTFRVDYNLVADYYTCTIIKDGNVVLAQEPLLLNNR LGATLPSLDLPWTDLRIMDPTGHATDAGKGKFGKQVQLYLDVKDPNGSEDENPDVEPLGY DPDEQSDDLTDGEVDIS >gi|227862915|gb|ACKR01000030.1| GENE 55 35572 - 36642 1094 356 aa, chain + ## HITS:1 COG:no KEGG:LVIS_1085 NR:ns ## KEGG: LVIS_1085 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 27 343 27 307 319 85 26.0 3e-15 MTIVTKDPHAWFVTEGEDGTQTIYNNETLGHDYPFAFQVNFSDTPTPQTNTVTLYNLSKE HKDFYHRKQHCYVAFNWGKEKKILAEGYISKIDMEQHDGVTDTQVISFTEGNDYSNVKAR KLKVNKTKKVNKYKTQKVKEKDHMKKTWKHWTTVETYKRGPKKGQKYLKHHRRPVEKLVK GKVKKRRVKYRGTKTVQVNKTFRKGTTYKKLIQGIAAQSGIKISKLDLAKNPTLKKNFTA KGKPLTLINNLLKKTGSKMTYVKGKLEIVNPKGMKRTWFEIDDKDLIQPPSYNEDNSDDD DGKGTWEITVPLVPEITVNVGVLMNSKYLKGRFYVKAGQHSSDGENPHTQCSLVSM >gi|227862915|gb|ACKR01000030.1| GENE 56 36656 - 37192 517 178 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877469|ref|ZP_03995537.1| ## NR: gi|227877469|ref|ZP_03995537.1| hypothetical protein HMPREF0506_0538 [Lactobacillus crispatus JV-V01] # 1 178 1 178 178 356 100.0 3e-97 MASPHNKQSSSQAELKKAWYHGMHKFEHGIYAGIKSFYIAQVVKYDKSKHIADVLPLANW SDGTKSAQYLDVPVIESCYLFDEMADALRPEFSNADVNHTIPAHPGAPAHVHTNLAGKLP KRHFMRAGVPVVVAVLDRDNDAWKGGRSVETFTPASGRIHDANDSVIIGVLGGNWLDG >gi|227862915|gb|ACKR01000030.1| GENE 57 37185 - 37568 379 127 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877470|ref|ZP_03995538.1| ## NR: gi|227877470|ref|ZP_03995538.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 127 1 127 127 227 100.0 2e-58 MARDLQVDQDGNLVIDPDTHDLAMVDGLDDIAQRIKATLEIRYGEMVNLDPEMGADYTNF LGKNFNENFAAADMTSAIEADVPEVESVDSIRFIKLPHRKLKVTFTATVQNDDGTTSTVE GGLPVAT >gi|227862915|gb|ACKR01000030.1| GENE 58 37519 - 38745 1149 408 aa, chain + ## HITS:1 COG:lin1710 KEGG:ns NR:ns ## COG: lin1710 COG3299 # Protein_GI_number: 16800778 # Func_class: S Function unknown # Function: Uncharacterized homolog of phage Mu protein gp47 # Organism: Listeria innocua # 22 406 2 381 383 236 37.0 8e-62 MTEQLAQWKEVCQLPLSQNWGLTENGFIAPSYEEVLDSVEDDFISKFGTDIVLTSNSNFG ILARLIAWRETLMIQELQKNYYSAFISTAIDTSLDRVGSNIGVGRKVEHPASAIIEVTTD GEYLIEAGETFETEDGYVFELERDITTTQQPDGSWKGTGWVESDEPGAMYNVEANKITLE SNPDDNVLSVTNPEPANGGQDYEDDETYRARLLEENEAKPGPTAWGMKSALMELPGVRDV NPVENDKADADRWGTPPYSVHIYVLGGNDNDIANVIVNHMAAGITLVGSKAMDVQDATGN KRTVHFDHAIDKPIYVKVKVNINENWNDDEGADDIKTAVADYINHLIIGKTLFLTRLYPL VYGVNGIDEATIMIGTHQGTLGGNDIVNDINEAVSCDTNNIEVDINGV >gi|227862915|gb|ACKR01000030.1| GENE 59 38735 - 39583 702 282 aa, chain + ## HITS:1 COG:no KEGG:LVIS_1081 NR:ns ## KEGG: LVIS_1081 # Name: not_defined # Def: hypothetical protein # Organism: L.brevis # Pathway: not_defined # 7 176 13 185 202 71 28.0 4e-11 MAYETTDELLAEISDHWVKDHRGNLYKLFDTYNGGLEQISDMANKVEKWRAIQDAEGATL DLFGQDLSTSRPTKEDDPYRFLLRLKVLLSRAQGTIPSIVKITSTALGTTQDIKIWNTAA PRHIGIQLPWDYINDVYIQRFLVDNLQHMLALGYWIDEIVFVTTTKLPLYVGMGTQIKHR KIERSPVKWWTGWKARTSDKQYIGIATQFKHHNTLSSNTKWWTGWKAESTRSQFIGVVGQ LAKSSVWATKAVWSKPQTAEIHAGLTIGNKTLTTTTQSIATE >gi|227862915|gb|ACKR01000030.1| GENE 60 39612 - 40679 1128 355 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877473|ref|ZP_03995541.1| ## NR: gi|227877473|ref|ZP_03995541.1| hypothetical protein HMPREF0506_0542 [Lactobacillus crispatus JV-V01] # 1 355 1 355 355 607 100.0 1e-172 MAEDPNTGFKEKLKQTILTDAGRHIFLSVGNGVGTLVYTRAILSSQKPVNSSGQALDDEA IRQITSLPDDLKEGQLTLTPVTDDHFDVIADFNNKNQPADINFSCIGWYARVDSTNEQNQ KVQGDEALIAITFTTNDHETLAAGSPDGLSTDVISAQLSMTIAEVANIDMTVNEVGYVTR AELNAWQTKVTADFNGKIEDNEKNTTITLRGKEPVKADGNHTFNLNTYTKEEIDQMVAGA GKGAGINTVQGVAPDNTGNVNLSGVFYAKTEVDQKLQAQQTKIDALTKTNSDKDNQIASL NQQITGQNNMYNDLLNRVKFLEQNAVLGKRFAASQEAEAEAWENQHPNYLAMIEK >gi|227862915|gb|ACKR01000030.1| GENE 61 40695 - 42839 1568 714 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877474|ref|ZP_03995542.1| ## NR: gi|227877474|ref|ZP_03995542.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 714 1 714 714 1122 100.0 0 MSTIRDPAYITDAGRTMMTAGGDVTYTKAVLYGQDISHLTSDQVKALTTIGSPLREVKVG ISDKQNTDRGTTVILEATFQNDNLANDLPYTAVGFFAQKGNDEKLIAVAVANTGAYLTAT SPDGIATDALDLKLAIAIGDATNVTATVDPAGSVTPATLNGAINKATHDLTSRIDTKADK MTVESELAIKTNSTDIDKKLATKANSSDVYTKKQVDDAFSSRDATIATKADKATVDAEIS KIDFTPYAKTADVSEQIKAVSDEVATKVGADYSYSKAQLDEKLLALSTDTNGKVNATQVA DMITGKADKADVDKSFKAVNDSLATKADQATTYSKTDVDKLLSAKDDTTDVDAKIKTVTD LANTKASQDSLNKLSQTVDTKADKATVDAEIGKIDFTPYAKTVDVDSKVKTVTDLANTKD STADVDAKIKDVTDKVNTKADQSNVNNQVQDAKNAATSRADNLQSQVNNLKGARTANSPD FDSLTDSGPYYVTNPEKGKNSPCGGIWGTLIISNGADHRIVQTYYPDNDDSPFYRMKVDN NWQPWRQMAKMSDISNLQNQINTKHNVITPLFREIQNSNSWQDIFGVGNPNNVLTSLRID SGGSGPLLNDFTAGVGFGGADTKGVLSVGYHNNQARITGGNGNGPVWSEDVAWKSDINSL LNTINQQNQTIQSLTTRKTKLDTSKTIILRADDSQLVKKRKQKLGKMKNLQDLQ >gi|227862915|gb|ACKR01000030.1| GENE 62 42870 - 43286 327 138 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877475|ref|ZP_03995543.1| ## NR: gi|227877475|ref|ZP_03995543.1| hypothetical protein HMPREF0506_0544 [Lactobacillus crispatus JV-V01] # 1 138 1 138 138 277 100.0 2e-73 MLDHLIFNVKKWFEISNDMSAITANNKNYYACPSRFTVMAETPIKNPNTGNSWRVLNDAE VTCVGAGQDVYFFDGQLEIYADSDENKHPNNAVYSHYYYTGVVEKTNVRNVIWGGKFLLT RLYQAFKAFATREVVAVC >gi|227862915|gb|ACKR01000030.1| GENE 63 43280 - 43648 345 122 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877476|ref|ZP_03995544.1| ## NR: gi|227877476|ref|ZP_03995544.1| hypothetical protein HMPREF0506_0545 [Lactobacillus crispatus JV-V01] # 1 122 1 122 122 246 100.0 4e-64 MLSHLILNKLKFWNAEKEPLLGKHVKMKGSDYIHVYEDSHAISGNRFITYPNTDYDYFLT EGEIKGVCQADYDEWGKPTVLKTYISLKNVKGYWKTDDNLSIERSWLDLDDCQIIQTGGG AA >gi|227862915|gb|ACKR01000030.1| GENE 64 43694 - 44095 211 133 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877477|ref|ZP_03995545.1| ## NR: gi|227877477|ref|ZP_03995545.1| hypothetical protein HMPREF0506_0546 [Lactobacillus crispatus JV-V01] # 1 133 1 133 133 261 100.0 7e-69 MLSHLILNKLKFWNINQSDERINANGKRYVAFPPKVVVNQDYAVNVMDNNGLGKIRWTND SAGYISYKKGTEATCIGVYENCYVVKDLMNSGSYSRSYAIIEKDLFTPIWGGKASLIRLY QAFKSLAGKVVAL >gi|227862915|gb|ACKR01000030.1| GENE 65 44092 - 44514 397 140 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877478|ref|ZP_03995546.1| ## NR: gi|227877478|ref|ZP_03995546.1| hypothetical protein HMPREF0506_0547 [Lactobacillus crispatus JV-V01] # 1 140 1 140 140 233 100.0 3e-60 MIDYMKLNKENYYPISNSDVTVNANGKTYREYKYQTVVKTLSGHALESLSNHTNDFFVVD ISALDMNRKTRFTFSNGDSFIITNYLMYTATVSRSYLDNATKNNYQIQFSSWGDAIEAYY HNGTDDVSQLDWVKIEVNVD >gi|227862915|gb|ACKR01000030.1| GENE 66 44598 - 45161 816 187 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0627 NR:ns ## KEGG: LGAS_0627 # Name: not_defined # Def: phage related protein # Organism: L.gasseri # Pathway: not_defined # 27 147 22 151 169 68 35.0 8e-11 MADETQVAPVAGAQENNATQENKGFTYYFSDPDSANAEMHHVVITLPYELPELPWHWHIE KPDDSLKDPVWDLKVNGWVENSKDGQAAILQEATKKLEELDKKSAELDQANDKVDQAIKS MQEVQAQSSKQNLALMKSFTEQTQNTNEILGTMQKTLAMVTKAVGANSNNATPATDTKPA DQATDKQ >gi|227862915|gb|ACKR01000030.1| GENE 67 45180 - 45362 368 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877480|ref|ZP_03995548.1| ## NR: gi|227877480|ref|ZP_03995548.1| hypothetical protein HMPREF0506_0549 [Lactobacillus crispatus JV-V01] # 1 60 1 60 60 111 100.0 2e-23 MTLMEQIQANFLEMYRMDWEFGIYDKNGMKDLVVQGFLSVENYQKIVGEAYAPATATPQQ >gi|227862915|gb|ACKR01000030.1| GENE 68 45331 - 45720 126 129 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|262046589|ref|ZP_06019550.1| ## NR: gi|262046589|ref|ZP_06019550.1| predicted protein [Lactobacillus crispatus MV-3A-US] # 1 129 1 129 129 199 95.0 7e-50 MRQLLQRLNNNSLYVIISLLIFGKGLGFYLNRRFFFYPPQLAWMMNNVYLDCSMMIVGVA LLVYACSRYNNNKLLGVLLALVVVLLAIISSIEIEHVIFAHEMEFVQNALSNTAIIAFII WTARHYSKR >gi|227862915|gb|ACKR01000030.1| GENE 69 45731 - 45952 88 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877482|ref|ZP_03995550.1| ## NR: gi|227877482|ref|ZP_03995550.1| hypothetical protein HMPREF0506_0551 [Lactobacillus crispatus JV-V01] # 1 73 1 73 73 97 100.0 3e-19 MHVDLNSIISALSALLLGYFTFKQNSKKSDMDSVENNRDYIVEQNKRLNAENKELHKEND KLRKELSENEAKH >gi|227862915|gb|ACKR01000030.1| GENE 70 45936 - 46169 294 77 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877483|ref|ZP_03995551.1| ## NR: gi|227877483|ref|ZP_03995551.1| hypothetical protein HMPREF0506_0552 [Lactobacillus crispatus JV-V01] # 1 77 1 77 77 120 100.0 4e-26 MKPNTRILDYVTLVQDGIMTVDDAPQDIKAEVTKWVRYFAGIKDDSMVKDPESTTPAPQP EKKPDAPSSFLAKKVTD >gi|227862915|gb|ACKR01000030.1| GENE 71 46169 - 46564 499 131 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877484|ref|ZP_03995552.1| ## NR: gi|227877484|ref|ZP_03995552.1| hypothetical protein HMPREF0506_0553 [Lactobacillus crispatus JV-V01] # 1 131 1 131 131 214 100.0 1e-54 MSLTQLTDYAWIAFLAIVAVCVGVSTGIDYFAKRSAKPLPKQVMTIDEIAKFVVSEAATL DVSGAQKKIQAVQALLDQAKQENKPVTEAVAKGAVQHAYDQMVADQAKNGATQDYDAKQI GFVSGDENGQD >gi|227862915|gb|ACKR01000030.1| GENE 72 46651 - 47772 1130 373 aa, chain + ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 1 206 145 343 444 80 28.0 4e-15 MSNSTVSKRSYGVDVASYQAENVSYTGAKFALIKLTQGTGYINPKAKAQIKSSLAHGLLT GGYFYATHSGSVSRARAEAKYAVEKAKAYGIPAGSYLADDWEQGSGNDTNGGAGSNTDAV IAAMQVIKEAGYKPLVYAGAYVLRNRLNTARIVKSFGTCLWVASYKVMGRQDSADFNYFP SMDGVAIWQFTDNYRGYNVDGNICLIDLKASSGSSKPKSTNKATESLSQHPVVKWNIGAV AVVSNVKGAYVYTDSKLTKRESDKLKPQGSLWQVFGIENGAVKVGKGQYFDGRAVYVKAN PIAYNDAKHGVAKIVMPHTHALDAPKADAGKVYGLELNSKVEIQGRVGRFLRIKEKHNGK TVYVTGNRAYIVL >gi|227862915|gb|ACKR01000030.1| GENE 73 48348 - 48488 95 46 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877487|ref|ZP_03995555.1| ## NR: gi|227877487|ref|ZP_03995555.1| hypothetical protein HMPREF0506_0556 [Lactobacillus crispatus JV-V01] # 1 46 7 52 52 77 100.0 2e-13 MSKKKPTRDETSEKIAKYAMIGAWSYPAYELIKQLGRIVLTLVKHK >gi|227862915|gb|ACKR01000030.1| GENE 74 48664 - 48846 195 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877488|ref|ZP_03995556.1| ## NR: gi|227877488|ref|ZP_03995556.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 60 10 69 69 107 100.0 3e-22 MEAKEAARIWGVSESYVRKTISQSPQKFPEGTVRKFGKQWVVTTEGMEHATGKKDPRKVL Prediction of potential genes in microbial genomes Time: Wed May 25 06:18:51 2011 Seq name: gi|227862908|gb|ACKR01000031.1| Lactobacillus crispatus JV-V01 contig00032, whole genome shotgun sequence Length of sequence - 3818 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 2, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 452 478 ## FI9785_1475 hypothetical protein 2 1 Op 2 . + CDS 470 - 1099 431 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 3 1 Op 3 . + CDS 1114 - 2046 619 ## COG2378 Predicted transcriptional regulator 4 1 Op 4 . + CDS 2114 - 2497 647 ## LGAS_0977 FMN-binding protein + Term 2597 - 2640 1.6 + Prom 2708 - 2767 7.2 5 2 Tu 1 . + CDS 2804 - 3271 445 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) + Term 3281 - 3321 4.5 Predicted protein(s) >gi|227862908|gb|ACKR01000031.1| GENE 1 3 - 452 478 149 aa, chain + ## HITS:1 COG:no KEGG:FI9785_1475 NR:ns ## KEGG: FI9785_1475 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 149 33 181 181 218 77.0 4e-56 NLLVHSLKISQASLFAQGSASLFLADKATEWLNYEHEEFKRLNHLLVNNGESIPTTSKQF QEYTMLEEDGSSKYLAGEQQLFNLVKDFDTQILFITKAITLANDENWPELAANLIDLLAW IKEQIRVSQSFLGHDLKEGLYTEEDDDDF >gi|227862908|gb|ACKR01000031.1| GENE 2 470 - 1099 431 209 aa, chain + ## HITS:1 COG:L0239 KEGG:ns NR:ns ## COG: L0239 COG0664 # Protein_GI_number: 15673985 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Lactococcus lactis # 5 209 8 212 222 134 41.0 9e-32 MADLCVDLVPLFTALPQDEKIKLERLVQHQNYQKGEIVIDPTVSANLVIVAHGSTKLYTL DETGHEDVLQVLHTGDYVGEDWLFGQVNTHSYVEATDNSEICLLRRQDFLKLIHQQPELS IRLLELSMTKISAMQKQIQLLTLPKVEERLFKYLQMYANEIGQNSFVLPLKLKDLALYLG TTPETLSRKFALLEEQGRLRRKLRQIDLI >gi|227862908|gb|ACKR01000031.1| GENE 3 1114 - 2046 619 310 aa, chain + ## HITS:1 COG:BH1889 KEGG:ns NR:ns ## COG: BH1889 COG2378 # Protein_GI_number: 15614452 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus halodurans # 1 310 1 313 325 136 28.0 5e-32 MKKSERLNQELIYLSDKKVFHLKELEEHFAISERTALRDIADLEQLGLAFYTESGRNGGY HLTNSKLLLPIRFNTQEINAIFFALQAIRGISETPYSNAYDEIELKLVKSLPQNLQEQVK LQKQLVHFYSQPSLNEVKFFATLLKACIDNSLIEVENFQFVQGKQKLQLLDIFFQAGNWF CHAYNLDLKKWYVLRLDKFEAVRVLPTETKIMNKEPLTANLQKYEENYYQVPYSCLLTEN GEQKVKYNSYPIMNIVHDAGKIYLQGKYNREELHYLVDYLISLGSDVQVLQPSELKKNYL TKLKQIMKKY >gi|227862908|gb|ACKR01000031.1| GENE 4 2114 - 2497 647 127 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0977 NR:ns ## KEGG: LGAS_0977 # Name: not_defined # Def: FMN-binding protein # Organism: L.gasseri # Pathway: not_defined # 3 127 4 128 128 216 82.0 2e-55 MAIMTEEFLDVLRDKGPATIVSINGKPASVVNTWSQYINVVADDTILIPAAGMHSIQNDL KADPEHALTIAVGSYNYPGTTGMGRGYHIHGSGKFITEGTYFDQMKAQFEWIRAVLVVKI SDIEQKI >gi|227862908|gb|ACKR01000031.1| GENE 5 2804 - 3271 445 155 aa, chain + ## HITS:1 COG:SPy1531 KEGG:ns NR:ns ## COG: SPy1531 COG0783 # Protein_GI_number: 15675430 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Streptococcus pyogenes M1 GAS # 2 153 24 175 175 151 46.0 5e-37 MKYPKTKEILNQAVADTTQLMMVVRQQHWYMRGPEFLKLHPYLDKVMDELDEQRDLISER LITIDGSPYSSLQEVLDHTKIEAHPGEWGISTRERFATIIAGYRYLEHLYEEGIKVSDEE GDYGSNDILTSCHTDIEKRIWMMQAQIGEAPKIDR Prediction of potential genes in microbial genomes Time: Wed May 25 06:18:57 2011 Seq name: gi|227862902|gb|ACKR01000032.1| Lactobacillus crispatus JV-V01 contig00033, whole genome shotgun sequence Length of sequence - 3945 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 62 - 913 448 ## LCRIS_00921 hypothetical protein 2 1 Op 2 . + CDS 918 - 1061 58 ## gi|227877498|ref|ZP_03995564.1| hypothetical protein HMPREF0506_0565 3 1 Op 3 . + CDS 1054 - 2361 713 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 4 1 Op 4 . + CDS 2361 - 3458 926 ## LCRIS_00923 endoglucanase + Term 3491 - 3533 3.2 Predicted protein(s) >gi|227862902|gb|ACKR01000032.1| GENE 1 62 - 913 448 283 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00921 NR:ns ## KEGG: LCRIS_00921 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 283 1 283 283 533 99.0 1e-150 MTRKYFKLAGLAYLASVTFPILLLWLARLYPANVFNGLVMILILAILTGLIFSRVDVTWL ILILTTIGAGFLLLGYVVMPVKEKFLLLIAYPIEASLVTVIRQHIIRWSFFTNRNDEIRH YNSLYDRRLKLRTFDSAEKFYQNELHKIEQHPELDLWSNVQIVSWDQHKQYAEAHPNSHD RILKQITKVLKNNRLKGEFIYFMGDATFLIISPEIPNELVKKVNHIVDTKLSELELPIPV SLKHASVHINVDNSDRFPDLIAVIRFLRRELETEIVTEYIKER >gi|227862902|gb|ACKR01000032.1| GENE 2 918 - 1061 58 47 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877498|ref|ZP_03995564.1| ## NR: gi|227877498|ref|ZP_03995564.1| hypothetical protein HMPREF0506_0565 [Lactobacillus crispatus JV-V01] # 1 47 1 47 47 74 100.0 2e-12 MNWFYYLSVIISVIFAIAFLVIFFCAYKIYGNIEQALMKSQKGELDD >gi|227862902|gb|ACKR01000032.1| GENE 3 1054 - 2361 713 435 aa, chain + ## HITS:1 COG:lin0533 KEGG:ns NR:ns ## COG: lin0533 COG1215 # Protein_GI_number: 16799608 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Listeria innocua # 7 433 9 416 416 236 34.0 9e-62 MTEGFQILTLISIWLSILFSLVTLWGGVLFWLKHSKEIAKITPLEYYPTVSIVVPAHNEE AVIQKTSKAILNLNYPEDKVEILIFADNCTDRTAELAEAIGNRTEYQKRQFKVIRRTGEG GKSGVLNDALKMIHGDYLCVYDADAMPEENALYFLIKKVLEDPERYVASFGRNKTRNAKQ NFLTSCINLEIVVTHRIQHCGVWQLFKIGRIPGTNFVIKTAFLKELGGFRSGALTEDTDL SFTILGTGKLIALAHNSEAFQQEPEKLKDYYYQRLRWAKGNYEVVINNFRHLFDHSNWRV KLETFYMSSIFFWFNAAVVLSDIFFIVNLIFAVIKIWVPTVEMPFTFTAGNLLLSQVLLF NWLLMILLYVLQISVAASTQFGQVTTRQLWLAVASYFTYSQLFIIISINAVWSAIADRLF HREATKWVKTKRFTD >gi|227862902|gb|ACKR01000032.1| GENE 4 2361 - 3458 926 365 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00923 NR:ns ## KEGG: LCRIS_00923 # Name: not_defined # Def: endoglucanase # Organism: L.crispatus # Pathway: not_defined # 1 365 1 365 365 693 97.0 0 MLKNKNRITPILILLTIGLFIAIMFYVRGSNNRTLHRNLYRQWKEDYVVEESDGKTWIKA APRTSLSEGQGYGMLISAMAGEKGWAKKEDFQRLYRFYLANRLTIDDQQTELMSWKQVDK KVYSTNATDGDLYIAESLIKAGKLWNEPKYLQQAKLLLADILRYDYNSTTQTLTVGDWAN KKSKYYYLMRTSDVLPTYFDDFYQLTGNSQWLTIKKVMLTKLYQLSKQHSSGLVPDFAWI SKKGVRPAKANEVAGKNDGDYSGNACRVPLFLATSKDARAKKIITKMLRFFSKQKQVTAG YQLNGKALNNYASPSISAPIFFAVQQLKKPEFDNLFVSQQYVFTNRLTDTNYYDAALITL VAMME Prediction of potential genes in microbial genomes Time: Wed May 25 06:19:11 2011 Seq name: gi|227862895|gb|ACKR01000033.1| Lactobacillus crispatus JV-V01 contig00034, whole genome shotgun sequence Length of sequence - 5429 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 3, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 617 - 676 3.2 1 1 Tu 1 . + CDS 709 - 891 204 ## gi|227877503|ref|ZP_03995568.1| conserved hypothetical protein + Prom 893 - 952 4.5 2 2 Tu 1 . + CDS 1017 - 1514 108 ## LCRIS_00926 RNA-directed DNA polymerase + Term 1559 - 1601 -0.8 - Term 1448 - 1488 6.2 3 3 Op 1 18/0.000 - CDS 1592 - 2056 409 ## COG0054 Riboflavin synthase beta-chain 4 3 Op 2 15/0.000 - CDS 2071 - 3249 1177 ## COG0807 GTP cyclohydrolase II 5 3 Op 3 16/0.000 - CDS 3251 - 3847 698 ## COG0307 Riboflavin synthase alpha chain 6 3 Op 4 . - CDS 3840 - 4901 756 ## COG0117 Pyrimidine deaminase - Prom 4933 - 4992 4.9 Predicted protein(s) >gi|227862895|gb|ACKR01000033.1| GENE 1 709 - 891 204 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877503|ref|ZP_03995568.1| ## NR: gi|227877503|ref|ZP_03995568.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 60 1 60 60 99 100.0 7e-20 MKLIEQILSQSNLKEAIHRVKINKGAPGVDKRMVEELDSYFRKHQAEIKYAIMKMMDING >gi|227862895|gb|ACKR01000033.1| GENE 2 1017 - 1514 108 165 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00926 NR:ns ## KEGG: LCRIS_00926 # Name: not_defined # Def: RNA-directed DNA polymerase # Organism: L.crispatus # Pathway: not_defined # 1 165 101 265 265 339 100.0 2e-92 MEDGLVKPNKIGVPQGGPLSPILSKLYNKIRELLCRRKAAAQPLSLVFTKVNQVVRGWIN YFKIGGMKYFLFKFSQWLRHKIRVVIIKQWKLPRRIYTNLMRINKALKCNFSDEDIHKVA NTRLGWYKRSTGHVVNFLLSPKVLGISKADRPGLVDPLEYYLSRR >gi|227862895|gb|ACKR01000033.1| GENE 3 1592 - 2056 409 154 aa, chain - ## HITS:1 COG:SP0175 KEGG:ns NR:ns ## COG: SP0175 COG0054 # Protein_GI_number: 15900112 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Streptococcus pneumoniae TIGR4 # 1 149 1 149 155 149 48.0 2e-36 MNIYEGNFKNNNYHVAIVASKFNETVTHHLVDGAIATLKQFGVLEDQIDIYWVPGAFEIG FTANKLLNSNNYDGIMTLGAVIKGETDHYSMIIQNVTNAIMQMNLKAEVPITFGILTTEN IDQALQRSGLKAGNEGSSTAQSLLEMISLNKQIK >gi|227862895|gb|ACKR01000033.1| GENE 4 2071 - 3249 1177 392 aa, chain - ## HITS:1 COG:SP0176_2 KEGG:ns NR:ns ## COG: SP0176_2 COG0807 # Protein_GI_number: 15900113 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase II # Organism: Streptococcus pneumoniae TIGR4 # 204 389 3 193 198 223 58.0 4e-58 MDVKKIQNAIQWMKNGGLVIVADDEDRESEGDMIGLGSKVTPENVNFMTKHARGLLCTPV SKTIAQRLNFYQMEQNNTDPYGTAFTISVDYKTTTTGISAYDRAATIKAIADPTSKPEDF FRPGHCFPLVAKGDQIKNRNGHTEASIALAHLAGEPEVAYICEVMKADGHMARRPQLKEI AKEYHLPFLTIAELQEYINSPVSKRSEFVNFPTKYGNFKIKAFANENLAIIKGKIDPKKP VLVRLHSECLTGDTFGSMRCDCGDQLHTAMKQMNKNGSGIILYLRQEGRGIGLINKLKAY GLQDQGYDTYEANEILGFKPDERNYIIAAKILKDLGISHINLLTNNPDKIDQLENNGITI EKRIPLEIPANKVNHDYLETKRDKFHHLLEAL >gi|227862895|gb|ACKR01000033.1| GENE 5 3251 - 3847 698 198 aa, chain - ## HITS:1 COG:BH1555 KEGG:ns NR:ns ## COG: BH1555 COG0307 # Protein_GI_number: 15614118 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase alpha chain # Organism: Bacillus halodurans # 1 196 1 195 215 145 36.0 4e-35 MFSGLVRGDARIAAIDKNDETIVMTVACQPDFTKNLQIGDSIAVNGTCLTVEQYTDTSFV VTMMPQTYQKTTFKNLDINAQLNVERSLQVGQRLEGHLVTGHIDDIAKVTEIRTNENAIE VWFAFPTRLKNQIVAQGSIAINGVSLTVMDTHDNVFSVGLIPHTQDETNLSKLNVGSEVN IETDILSKYVAKNLEKRI >gi|227862895|gb|ACKR01000033.1| GENE 6 3840 - 4901 756 353 aa, chain - ## HITS:1 COG:BS_ribG_1 KEGG:ns NR:ns ## COG: BS_ribG_1 COG0117 # Protein_GI_number: 16079385 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine deaminase # Organism: Bacillus subtilis # 5 144 2 140 142 149 50.0 6e-36 MENSDEAYMQLAIQEAKKGLYQTWKNPMVGAVIVKDGNILATGHHIRYGYYHAERDAISK LTPEQLFNSTLYVTLEPCSHYGKQPPCSDLIVSSKIKRVVIAQVDPHQLVTGKGIAKLRQ HNIQVTVGVLEDQAKKLNKFYTYFYQHNHPWITLKQAVSLDYRINEAKNIRTQITNETVY QRVHRERANYQAIMIGSNTAIIDNPSLLTTVTTDFPPIRIIVDRRGRLLNHLNIKLLTDK LSPTWIFTQNTSLAKTPHNENISIFLMKNASITEVIKKLTNEEIQSVYVEGGPTLANALL AEGQVNNLITYISPILLGQKGKLGISPSSKTTLHNLRAEKLDDNFRIEGEINV Prediction of potential genes in microbial genomes Time: Wed May 25 06:19:24 2011 Seq name: gi|227862880|gb|ACKR01000034.1| Lactobacillus crispatus JV-V01 contig00035, whole genome shotgun sequence Length of sequence - 14861 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 7, operones - 2 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 488 248 ## FI9785_169 putative transposase + Prom 494 - 553 6.1 2 2 Tu 1 . + CDS 653 - 1324 830 ## COG3212 Predicted membrane protein + Term 1342 - 1380 7.0 + Prom 1326 - 1385 6.8 3 3 Tu 1 . + CDS 1491 - 2534 1347 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases + Term 2561 - 2594 1.3 + Prom 2556 - 2615 6.9 4 4 Tu 1 . + CDS 2641 - 3897 887 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen + Term 3915 - 3961 3.8 - Term 3911 - 3942 -0.7 5 5 Tu 1 . - CDS 3949 - 4650 495 ## COG2186 Transcriptional regulators - Prom 4743 - 4802 7.0 + Prom 4688 - 4747 8.2 6 6 Op 1 . + CDS 4794 - 6323 1530 ## COG1233 Phytoene dehydrogenase and related proteins 7 6 Op 2 . + CDS 6316 - 7515 1120 ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 + Prom 7525 - 7584 4.2 8 7 Op 1 41/0.000 + CDS 7615 - 8409 931 ## COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component 9 7 Op 2 24/0.000 + CDS 8425 - 9633 1013 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 10 7 Op 3 19/0.000 + CDS 9614 - 10852 1238 ## COG0520 Selenocysteine lyase 11 7 Op 4 6/0.000 + CDS 10788 - 11300 269 ## COG0822 NifU homolog involved in Fe-S cluster formation 12 7 Op 5 . + CDS 11293 - 12696 1474 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 13 7 Op 6 . + CDS 12696 - 13019 365 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 14 7 Op 7 . + CDS 13031 - 14539 1378 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family Predicted protein(s) >gi|227862880|gb|ACKR01000034.1| GENE 1 3 - 488 248 161 aa, chain + ## HITS:1 COG:no KEGG:FI9785_169 NR:ns ## KEGG: FI9785_169 # Name: not_defined # Def: putative transposase # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 161 125 285 285 312 96.0 3e-84 RNYRVKIFRGVADIGYKATKKVYYYGFKVHAIVSDDGYLLDYAVTKASVHDAKETVELMI NAHPANHYLLGDEGYLSKNLATNLKHMGYVLWTPYRKNMQGARRHNDHQLMAIRRSIESD FSLLSYYNAENNRARSPVGFQQRLEIAILAYNMAYCLERFN >gi|227862880|gb|ACKR01000034.1| GENE 2 653 - 1324 830 223 aa, chain + ## HITS:1 COG:lin0040 KEGG:ns NR:ns ## COG: lin0040 COG3212 # Protein_GI_number: 16799119 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 58 198 57 203 203 62 29.0 6e-10 MKKFNIKKVSLAAAALGLAAGGASLLAINQANASTGTQTQQSQSNNTEQNQSNTGTASIN LSQEDAVNKFYEKYGSKSIKEIELEQKKNSYVYEIEGFDSQNEYKVKIDASNGNILKAES EKLDSDDEAQALDLNNMMTREQATQLAQTQVSGQPVEWSLEMDDDQPIWKVEFEDGGKKT EVEIDAKNQKIIKTETEDDEKDHDKDYEKEKNDSQEHQNTDED >gi|227862880|gb|ACKR01000034.1| GENE 3 1491 - 2534 1347 347 aa, chain + ## HITS:1 COG:L190278 KEGG:ns NR:ns ## COG: L190278 COG1063 # Protein_GI_number: 15673531 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Lactococcus lactis # 1 346 1 347 348 402 58.0 1e-112 MKAAVFVEPGKVEVREVPKPKIDGENQAIIRVIRASVCGSDLWWFRGIADRESGSLIGHE AIGVVEEVSDEVTNIKPNDFVLVPFTHGYGHCVACINGFEGNCLNLKPGTNGGYQAEFMK YEPANSGLVKIPGKPGDYTDDQLASLQTLSDVMATGYHAALNAEVKKGDTVAVIGDGAVG LAGVIGAKLLGAEKIILLSHHDDRAQLGKEFGATDIVSSRDDQAVKDVLALTKENAGADA FLECVGAESAIEQAGQIARPGAVIGRVGVPHAEPKSNQLFWKNVGLRGGIASVTKPDKEV LLQAVLDGKINPGKVFTKSFDLDHIQEAYEAMSNREAIKSLIIVNEK >gi|227862880|gb|ACKR01000034.1| GENE 4 2641 - 3897 887 418 aa, chain + ## HITS:1 COG:MA2121 KEGG:ns NR:ns ## COG: MA2121 COG2865 # Protein_GI_number: 20090964 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Methanosarcina acetivorans str.C2A # 3 356 15 375 458 132 28.0 1e-30 MRETKNLEFKENLTNTFLKTVSAYANYGTGEVKFGIKDDGTIIGVKNPIDFCLNVENKIN DSIQPHPDYNLEIDDKTNVVTLTVKQGDNPPYLYKAKAYKRNDSASIEVDRTELSQLILI GENKTYDSLTAANQNLSFNILEMALKEKLGINKLTSDVLITLNLEQKNAGYTNAGELLAD KNHYRGIDVVRFGENINIMLDRANYENESILKEYDQTIQKYRQYYQREEIHGVTRNVISQ IPEEAFREAIANALVHRTWNINAQIKVSMFDNRIEVVSPGGLPHNLSKDEYLSGQISILR NPIVANVFFRLGLIEQFGTGIKRIKDSYQGSLVQPQFEIFENSIKIILPILKFITDDLSD DEKKVFRTIREGANTSTQISRASNFGKTKVLNLLKQLTKQGYVERIGEGRSTKYVLNK >gi|227862880|gb|ACKR01000034.1| GENE 5 3949 - 4650 495 233 aa, chain - ## HITS:1 COG:SMb20375 KEGG:ns NR:ns ## COG: SMb20375 COG2186 # Protein_GI_number: 16264109 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Sinorhizobium meliloti # 15 179 21 174 256 64 32.0 1e-10 MKFHPINVPTATDLFFVNQLKTAILTGKFNLGDKLPSERVLQEQLQVSRTVINSGLKKLA ALHFIEIRPRYGAFVADYRVDGDLQTMNEIINFYGGHYRISLLNSIFEIRKLIENDVVRL DCIEQDEQCLQSAISNMQNLAKATNSKDAAQEIFAYVHSLALASKNYVYPLLINNFKSIY LTLGEWICNEVDVNSISEENLKLIKLIKSGDKNIAIAYNNKLINWSYEILTKQ >gi|227862880|gb|ACKR01000034.1| GENE 6 4794 - 6323 1530 509 aa, chain + ## HITS:1 COG:BH1848 KEGG:ns NR:ns ## COG: BH1848 COG1233 # Protein_GI_number: 15614411 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Phytoene dehydrogenase and related proteins # Organism: Bacillus halodurans # 5 474 10 468 498 122 25.0 1e-27 MAEKYDVIVVGAGNGGLMAAASSARMGKKTLLIERHNLAGGAATSFIRGRFEFEVALHEL CEYGHADNPRAVRKMYDWLGANVKMQELPDTYRYIIYGKDGFDVKMPAGRENFINAMEKY VPGTSEKMEKLFDLCEQSMNALAEIADGKDKKEVIKKYPAFIEYATKSWDDVLNKLKLPK KAQQILGAYWCYIDIPTDEFEFPYFATMLATYVENDAYIPQRRSHDMSTALAQVIYDNGG DVWLSTTVEKILVENGQAVGVQIKGEKVFAKEVICGITPHAVYGNMMDQKCIPEYALKYA NSHKLGTSAFLVYLGLNKSCRELGINDYSVFIASTGDTRKQYENCKTMDKNDFMIMNCLN TVIPNASPKGISVCYITKLVDDGVWDNVKPKDYEKLKVKIAKNAIDEYEQATGIKISDSI EEIAIAAPPTFARYMGTPDGEIYGYHCAPWDQIIGRSMDLKNVVNPLPHLYFCGGHGFMC DGYNVSYTTGLTAAKIAVSDINNMGADHE >gi|227862880|gb|ACKR01000034.1| GENE 7 6316 - 7515 1120 399 aa, chain + ## HITS:1 COG:PA5411 KEGG:ns NR:ns ## COG: PA5411 COG1018 # Protein_GI_number: 15600604 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Pseudomonas aeruginosa # 52 387 21 364 366 113 26.0 7e-25 MNKFEEIKGIIDLKKLQNERKHEIQNASDAELPKKYPMNILEEELHPETQYLKITKIIDR DDAKSFVFVPDESKGTSKLAYFQAGQYISLKLHIGKSYCTRAYAISSTPKQALSGEYMLT IKLVKNGYVTPYIWENWKVGTEVAASGPAGQLFYEPLRDKKTIIAGGSGITPFYSMAGAI ADGTIDANLIILYGSRTHNHILLGDELDRIAAKTDKVKVVNILSDEEVEGYEHGFINQAI IEKYAPADKNYSIYMSGPAAMIHFVNQEIKKLDLRPGQVRQEMSGSVNPYFFKNYPEEAK NKTFNMTVKTRDQIQVIPARSDESLLVAMERAGIIAPSSCRSGVCGACRSRVVNGKVFIP FPGRRAADSEYNYVNTCVTFPISDLTLQVPVHDYANMLG >gi|227862880|gb|ACKR01000034.1| GENE 8 7615 - 8409 931 264 aa, chain + ## HITS:1 COG:L34806 KEGG:ns NR:ns ## COG: L34806 COG0396 # Protein_GI_number: 15673775 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, ATPase component # Organism: Lactococcus lactis # 1 259 1 253 256 365 70.0 1e-101 MATLEIKDLHVEVEDKDKKTSKKILKGVNLTLKTGEIHAIMGPNGTGKSTLSETIMGNPR YHITQGDILLNGESIINMPVDERARKGLFLAMQYPAEVPGVTNAEFLRVAINARRPKDDP ISVMTFLNELDKNLDLLDMKEAMTERYLNEGFSGGEKKRNEILQMLMIKPSFGILDEIDS GLDIDALRVVSRGVNAMRGDNFGALMITHYQRLLDYIVPDVVHVMMDGRIVKDGGPDLAK KLEKEGYAGLRDELGLHIKLVDEN >gi|227862880|gb|ACKR01000034.1| GENE 9 8425 - 9633 1013 402 aa, chain + ## HITS:1 COG:SP0868 KEGG:ns NR:ns ## COG: SP0868 COG0719 # Protein_GI_number: 15900751 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pneumoniae TIGR4 # 2 395 1 417 420 328 43.0 8e-90 MLSKENILVSSKENNEPSWLTDLRTSSFEKMHKLSYPKMQRFSYQDWPLIAKEDFKWQNQ PDFFIKKENHDLLNDKGIILCDLFTAIKQYPDLVKSALASVIKNDEDKLTAYHYAYLNSG LFLYIPKNTVLAEPITVTLNPTQDPYISHLLIVTEDNSQVKFLEEIQNEDKAVKSANLMV EIVAHPGSHVEFSSLDEMDKDTTLYFNRRARIENDAHVEWAIAFMNDCNTLGDLDSELIG EGSYADSKAIAVTTGDQRVGINNRVTNRGPHSTGLINQRGVLLENSQLIFNGIGQIVHGA HGSKADQQNRVLMMSDNAHGDANPLLLIDENDVIAAHAASVGPVDQIQMNYLMSRGIPYD QAQRLVIRGFLGAVLDAIPNKEVRQKMIDILEKKLIDGQTRR >gi|227862880|gb|ACKR01000034.1| GENE 10 9614 - 10852 1238 412 aa, chain + ## HITS:1 COG:lin2508 KEGG:ns NR:ns ## COG: lin2508 COG0520 # Protein_GI_number: 16801570 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Listeria innocua # 4 409 2 407 408 498 58.0 1e-141 MDKLDVKKIKADFPILNQKINDEKLIYLDNAATSQMPLVVEKQIEHFTNFDRANVHRGVH TLGLRATQKYENARQKVADFIGAKNASEIVFTSGCTDSLNLVAATYGEQNIQAGDEIVVS IMEHHSNFLPWQQIALRKNAKLKFIEIDANGRLDLEDAKSKITTKTKIVAITHVSNVLGT INPIAALTSLAHKNGAIVVVDGAQAVGHFPVNVTDLDADFYAFSGHKMFAPTGVGVLYGK KALLEQMPPYRFGGEMITNVTRKGATWAPVPQKFEAGTPNISGVIGVGAAIDYLGKLDLT LIQKHEDSLTAYALKELSKIDDLVVYGPKDCSNRTGVISFNLRKIHPHDLATALDLNGVE VRAGHHCAQPLMESLKTESTVRASFSIYNTKNDIDQLVSSIQEAKEFFGELR >gi|227862880|gb|ACKR01000034.1| GENE 11 10788 - 11300 269 170 aa, chain + ## HITS:1 COG:BS_yurV KEGG:ns NR:ns ## COG: BS_yurV COG0822 # Protein_GI_number: 16080320 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Bacillus subtilis # 15 163 2 144 147 134 48.0 1e-31 MILINWLVQFKKQRSFSVSLDKLKSLYKAVILDHAQTPRNFGQLANYTNETTVYNPTCGD KIHLTILVENDQIKDIAFDGEGCTISKASASMMTQLVKGKNIEQAISFSRIFSDLAAGKK RSEQDMQKLEDAQVLISIMEFPARIKCATLAWWGLDRALLGKENEDEDND >gi|227862880|gb|ACKR01000034.1| GENE 12 11293 - 12696 1474 467 aa, chain + ## HITS:1 COG:SP0871 KEGG:ns NR:ns ## COG: SP0871 COG0719 # Protein_GI_number: 15900754 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pneumoniae TIGR4 # 12 467 15 470 470 679 71.0 0 MTKAEEIVKDEDYQFGFHDNVKPKFSTGHGLTEDVIRQISAEKHEPKWMLDYRLKAFHIY EKMPMPSFGPDLSGLDLDDMLYYQKMTDKKYRDWNDVPQDIKDTFERLGVPQAERKYLAG SAAQYESEMVYHKMKEQFDKLGIIFTDTDTALQEYPDLLKKYFGKLVPIDLNKFSALNCA VWSGGTFIYVPKGVQVPAPVQAYFRLNAENSGQFERTLIIVDQDAHLDYVEGCTAPQYSS DSLHAAVVEVNVLDNAYCRYTTIQNWSDNVYSLETKRAVAGKHATMEWVDGNLGAKVTMK YPSVYLNGEGARGTMLSIAVAHHGIHQDSGAGMFHNAPNTSSSIVSKSIAKGGGSTDYRG SVKFSKKSDGSKAHVECDTIIMDDQSSSDTIPTNAIENSNVAMEHEATVSKISEDQLYYL ESRGISERKATEMIIMGFVEPFTKQLPMEYAVELNRLISFQMEGAIG >gi|227862880|gb|ACKR01000034.1| GENE 13 12696 - 13019 365 107 aa, chain + ## HITS:1 COG:SPy0783 KEGG:ns NR:ns ## COG: SPy0783 COG2151 # Protein_GI_number: 15674828 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Streptococcus pyogenes M1 GAS # 14 105 19 111 112 94 51.0 5e-20 MLEIENLSDQEKDVYQALKDVIDPELQVDIVDLGLIYGIEVNDHLCQITMTLTIMGCPLS EWLNNEITKAAESVAEIDDCQIKLVWYPQWNPNMMSRIARMTLGIHG >gi|227862880|gb|ACKR01000034.1| GENE 14 13031 - 14539 1378 502 aa, chain + ## HITS:1 COG:L91569 KEGG:ns NR:ns ## COG: L91569 COG1914 # Protein_GI_number: 15673064 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Lactococcus lactis # 2 301 7 306 314 393 70.0 1e-109 MENHSFISYANGKSLAEINSTIAVPKTKNFFRMLFAYTGPGALVAVGYMDPGNWAASING GQSFNFLLISTILISSLMAMLLQYMSAKLGIVTQMDLAQAIRARTSKRLSFILWIVIELA IMATDVAEVIGAAIALNLLFKIPLVIATFITIFDVFLLLLLSKVGFRKIEALISCLIMVI LFVFAYQVMLAEPNWSKIFLSVFPSPELVAQHPVVNGLSPLTGSLGIIGATVMPHNFYLH SSICQTRKINHHDPDDVKNAVRFTTWDSNIQLILAFFVNVLLLIMGAAVFKSGAVKDSSF FGLYDALSNTAMLSNPILISVAKTGILSVLFAIALLASGQNSTITGTLTGQIVMEGFIHL KMPLWARRLFTRLLSVIPVIICVVMTANDTISQQHFALNMLLENSQVFLAFAVPFSIVPL LIMTDDKRMMGQFKNRRSWSVLGWISSIILIFLNLYNLPATFVSFNIMPKQDAKIFAYAI IVLIILLLAWTCWDMEKSKIRH Prediction of potential genes in microbial genomes Time: Wed May 25 06:19:29 2011 Seq name: gi|227862871|gb|ACKR01000035.1| Lactobacillus crispatus JV-V01 contig00036, whole genome shotgun sequence Length of sequence - 6649 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 5, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 141 - 590 349 ## gi|227877525|ref|ZP_03995588.1| hypothetical protein HMPREF0506_0589 2 1 Op 2 . - CDS 616 - 1524 1116 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 1576 - 1635 4.4 3 2 Tu 1 . - CDS 1637 - 2227 505 ## COG1309 Transcriptional regulator - Prom 2256 - 2315 4.8 4 3 Tu 1 . + CDS 2809 - 3564 694 ## lp_2871 transcription regulator + Prom 3665 - 3724 6.6 5 4 Op 1 . + CDS 3800 - 4171 411 ## LAF_0631 hypothetical protein 6 4 Op 2 . + CDS 4187 - 4792 520 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Prom 4794 - 4853 9.1 7 5 Op 1 10/0.000 + CDS 4875 - 5786 1055 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases + Prom 5791 - 5850 3.3 8 5 Op 2 . + CDS 5917 - 6630 524 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Predicted protein(s) >gi|227862871|gb|ACKR01000035.1| GENE 1 141 - 590 349 149 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227877525|ref|ZP_03995588.1| ## NR: gi|227877525|ref|ZP_03995588.1| hypothetical protein HMPREF0506_0589 [Lactobacillus crispatus JV-V01] # 1 149 1 149 149 278 100.0 6e-74 MNKQIVYFSNSGNNERLAKRIAHYYGVNATPIIPVNPYPNKYHELTSQAKIERFRHINVA IKPVKLESNINTLILVSPIWYADLPRPVVTFLKQVQRSFQHVVFVSDKFMIGFGICKRTL KKYLSKQTTIDLIAANSNNFSLVKQYFQK >gi|227862871|gb|ACKR01000035.1| GENE 2 616 - 1524 1116 302 aa, chain - ## HITS:1 COG:ECs1909 KEGG:ns NR:ns ## COG: ECs1909 COG1073 # Protein_GI_number: 15831163 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Escherichia coli O157:H7 # 1 302 6 310 310 249 41.0 4e-66 MQKKVTFKNNEHDMSGILFFPDNFDENKQYPAFSIASPAGAVKEQIATNYDSRLAKYGFI ALAFDTSHQGESGGNPRQLEAPYERVEDIKCAIDYLTTLPYIDNNRLGQLGICAGGGYSM HTAMTDRRIKAVVAVSMSDPASWIRDGFDGKTSVETQLALLEEASNQRTREANGAEPIYG TFVPEEVTEGMPNTLVEAHEYYRTPRVQHPRSTNKVSMMSIDKMTDFSTFLFADRYSTQP ILMIAGSNADTFRFSEDLLKKAASTNKELFTIEGATHGDLYDKPEYVDQAVEKAAAFFKE NL >gi|227862871|gb|ACKR01000035.1| GENE 3 1637 - 2227 505 196 aa, chain - ## HITS:1 COG:alr1721 KEGG:ns NR:ns ## COG: alr1721 COG1309 # Protein_GI_number: 17229213 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Nostoc sp. PCC 7120 # 8 194 1 188 190 131 38.0 7e-31 MIVYYTNMRYKDEHKKEAIYEATILLLNKEGFSSTSMSKIAKHAGVSASTIYIYFKNKDD MLKKLYLDTKKKMSAKMFTDTTNDDAKSSLAKVIRNYIDFILDNQDAFLFLQQFTNSPYM TELDEREASTYFTPMYQLVKKGQEEGTFKDVDANLLFAYIEPPITELAKRHFKGEIDFTE ERIDVLINLAWSAIKK >gi|227862871|gb|ACKR01000035.1| GENE 4 2809 - 3564 694 251 aa, chain + ## HITS:1 COG:no KEGG:lp_2871 NR:ns ## KEGG: lp_2871 # Name: not_defined # Def: transcription regulator # Organism: L.plantarum # Pathway: not_defined # 2 251 45 294 295 259 52.0 8e-68 MLDVKLFDRKGRSFELTAAGEFFYQHAKEVVKTTNELIDQTQKIGKLPINYELRLGYLSN FGTNEFLHTVAHFSQMYPEVEVKIKSGTHEQLFELLKHDRIDLAFSDQRRALSNEYHNEF LTETDFMVVLPLNYPDNNRILATQLADLSCILIVNETQKAAEEQYYRDALGIKSRFLTVT TIDEAQIMVAANQGYFIVNKRTQAMINKETVKTIPLYAGDIPLQQNYYTYWKQDNSGFYI EKFAELLKKQF >gi|227862871|gb|ACKR01000035.1| GENE 5 3800 - 4171 411 123 aa, chain + ## HITS:1 COG:no KEGG:LAF_0631 NR:ns ## KEGG: LAF_0631 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 2 123 4 125 125 136 53.0 2e-31 MTDKEVIIDLYRQENRAIVDKDIETLGQILDSTMVLHHMTGYAQPKLEWIDQIQNGELKY YSSDEEQISDIQIAGNHASLIGHNKVKASVWGSPVSTLLLQMKMEFAKINGKWAITKQIA STY >gi|227862871|gb|ACKR01000035.1| GENE 6 4187 - 4792 520 201 aa, chain + ## HITS:1 COG:ECs1906 KEGG:ns NR:ns ## COG: ECs1906 COG0702 # Protein_GI_number: 15831160 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1 200 9 210 220 149 41.0 4e-36 MKNILIIGATGALGTTTTQTVLNETDNHLTLFARSANRINVIDPQRETVISGDVLNDHDL DKALVGQDAVFAALSGDLVAYAKQIIAAMDRNNISRLIFISSMGIYNEIPASIGISSNLE SNPILQSYRDAADIVEASNLNYTVIRPGWFTGGPVNYEITHKGEPFGGPDVSIKSIVDLV TKLLNDDELYSCESIGINKPS >gi|227862871|gb|ACKR01000035.1| GENE 7 4875 - 5786 1055 303 aa, chain + ## HITS:1 COG:L190278 KEGG:ns NR:ns ## COG: L190278 COG1063 # Protein_GI_number: 15673531 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Lactococcus lactis # 1 303 1 347 348 353 54.0 2e-97 MKAAVFMESGKMEVHEVEKPIIQKPTDAILKIVRACVCGSDLWWYRGITNREKGSLVGHE AIAIVEEVGDNVKDIKPGDFVIAPFTHGCGHCVACLAGFDGNCVNQEAGSNGGYQGEYLR FTNANWALVKIPGHPSDYTDEQLNDLLTLADVMATGYHAAASAEAKEDDTVAVIGDGAVG LCGVIGAKLRGDDAVKKVLECVGAVSAIEQAGKLARPGAIVGRVGVPQTEPSSNTLFWKN IGLRGGIASVTTYDRAILLDAVLKGKIHPGKVFTKRFSLDKIQQAYEVMDKREAIKSLII VSE >gi|227862871|gb|ACKR01000035.1| GENE 8 5917 - 6630 524 237 aa, chain + ## HITS:1 COG:SPAC1348.09 KEGG:ns NR:ns ## COG: SPAC1348.09 COG1028 # Protein_GI_number: 19113683 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Schizosaccharomyces pombe # 1 231 1 234 236 130 32.0 3e-30 MRSPEKETELTSYQNVFIYPLDVTKPEQISQTVSEVLKKHEVDVLFNNAGYGMKSRFEDM TEEAMQQSLNTNLLGMIRVTQKFIPYFKKKKSGLILTTTSLAGEMGLALDGIYAADKWAV TGVCEMLYHELAPFGIQVKIIVPGVVKTGFKMETFAMPGFDQLLKNQTKMLMPDTDSLES PEEVAQDIFKAVTDKDRDRMCYVTGKITKELYEKRQKLGDEAFRRYIRNQLMSKRKV Prediction of potential genes in microbial genomes Time: Wed May 25 06:19:44 2011 Seq name: gi|227862865|gb|ACKR01000036.1| Lactobacillus crispatus JV-V01 contig00037, whole genome shotgun sequence Length of sequence - 4921 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 4, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 267 - 326 6.8 1 1 Tu 1 . + CDS 379 - 1746 1246 ## COG1114 Branched-chain amino acid permeases + Term 1796 - 1843 11.4 + Prom 1754 - 1813 3.4 2 2 Tu 1 . + CDS 1864 - 2094 267 ## LCRIS_00936 alpha/beta hydrolase superfamily protein + Term 2303 - 2347 7.6 + Prom 2235 - 2294 5.7 3 3 Tu 1 . + CDS 2354 - 3865 1268 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 4014 - 4051 0.7 - Term 4099 - 4157 11.2 4 4 Tu 1 . - CDS 4166 - 4837 528 ## COG3548 Predicted integral membrane protein - Prom 4861 - 4920 2.4 Predicted protein(s) >gi|227862865|gb|ACKR01000036.1| GENE 1 379 - 1746 1246 455 aa, chain + ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 4 448 3 447 449 333 44.0 5e-91 MKTKKASIRRSMIIASLIFGMLFGAGNLIFPVHLGQLAGSNWLIASSGFLLSGVLLPLMA LLAISITKSNGIYDLALPNGRYYALIFLILVHATLGPLFATPRTATVPYEIGIAPYLSKS TNTLGLLIYSAIFFSLVYLFSNHEGKITTLIGKVLNPLFLLLLFLIFLLAFINPLGSRNT AAITASYARHAFSNGFLQGYNTMDGLAALAFGITIITAIRELGIKKTRQISLATAKSGFL GIAGVAIIYLALIWLGATSLHQFKLAANGGITLAQISHHYLGTAGDAILATLATITCMTS AMGLVIAFSQDFHRRFPKISYRTFLRINCGLSFLFANLGLNQIIAWSTPILMFLYPLAIT LIILGLLSPLFKNDRLVYRITTELTLIPAFFDMLNALPAGLHESRLLQTLLGFAQQYFPF FNLGFGWLTFGIAGLILGLICHVLRVRKRLGLISE >gi|227862865|gb|ACKR01000036.1| GENE 2 1864 - 2094 267 76 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00936 NR:ns ## KEGG: LCRIS_00936 # Name: not_defined # Def: alpha/beta hydrolase superfamily protein # Organism: L.crispatus # Pathway: not_defined # 1 76 94 192 192 106 62.0 2e-22 MGLNINGKPNKINSTYQQMTGVRELYMKKHVQVLNIIGDGDSTYKVEKINGKNAQHSKLH ENAQVDQALIKFLWNK >gi|227862865|gb|ACKR01000036.1| GENE 3 2354 - 3865 1268 503 aa, chain + ## HITS:1 COG:L119564 KEGG:ns NR:ns ## COG: L119564 COG0488 # Protein_GI_number: 15672881 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 503 1 512 513 380 42.0 1e-105 MSNLKISRLSFEYEDSNRYIFKNLNLDLDTDWKLGLIGRNGRGKTTFLNLLRGKYCGTGQ IQGNASFSYYPVKIQNSKNITFYELQDQVAFEQWKLERELTLMNLDPDLLWQPFNTLSGG EQTKILLALSFTDQDSFPLIDEPTNHLDETSRKQVAEYLNGHDQGYIVVSHDRDFLNQVT DHILAIENTAIHLYQGNYSTYEVTKKRRDDFDREKNKKLTGQVKKLNQEKVQFHNWAAKI EARKKLGMKTQHIINRRTRLNKGAIGHQAAKMMKKSINARNRMDKRIAEKEGMLKNIEKV PTLTMNFQADYHREILQLNDLSLQLKNSRELFKSLTLSLNNHEIIAIEGKNGSGKSTLIK HLLGISQNLIAKGNYELIESLKISYLPQEFVMYSGSLKDFAKKYHLSYEALLSNLKKMGF ARADFTTRIEKMSMGQQKRVALAKSLTEPANLYLWDEPANYLDVFNQDQLIKLLKSVKPT MLLIEHDPYFITSVADQQIKLTN >gi|227862865|gb|ACKR01000036.1| GENE 4 4166 - 4837 528 223 aa, chain - ## HITS:1 COG:L111003 KEGG:ns NR:ns ## COG: L111003 COG3548 # Protein_GI_number: 15672091 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 32 215 122 304 331 100 30.0 2e-21 MPRNPRRHNLNQFSDQEKDKLKNVKKELAEAQKKEPESLQAFNDGVMAIIITIIVLEIQP ALHEIHYQQFISNIAVFLITFFIVADFWYDLHLSFSYYIFKPSKAIAILDFFFLADLSLL LVMTKWIMAENSSFAVANLGIVFLIAKILEYLIQYFGAKNTARYSQIMRIIISRSFIRKM TVTLFLNVILIILSLFNAKLAMILYLIVPVISFLFPVKRNKIM Prediction of potential genes in microbial genomes Time: Wed May 25 06:19:47 2011 Seq name: gi|227862862|gb|ACKR01000037.1| Lactobacillus crispatus JV-V01 contig00038, whole genome shotgun sequence Length of sequence - 3104 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 293 - 352 7.7 1 1 Op 1 16/0.000 + CDS 421 - 1746 1309 ## COG0593 ATPase involved in DNA replication initiation + Prom 1824 - 1883 3.8 2 1 Op 2 . + CDS 1921 - 3051 1091 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) Predicted protein(s) >gi|227862862|gb|ACKR01000037.1| GENE 1 421 - 1746 1309 441 aa, chain + ## HITS:1 COG:BH0001 KEGG:ns NR:ns ## COG: BH0001 COG0593 # Protein_GI_number: 15612564 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Bacillus halodurans # 1 439 15 447 449 402 48.0 1e-111 MRARFNEVAYNAWFKNTKPISYNGKTHELKILVQNPVSKGYWEKNLSSQLIQSAYGYADI EILPVFKISEDADITERIVTPAPKRDAQVQQPNLPEKEFTKDLKLNEKYTFDNFVQGEGN KLAAGAALAVADSPGSFYNPLFIFGGVGLGKTHLMQAVGHQMLAERPNAKVVYIQSETFV NDFINSIKNKTQDKFREKYRTCDLLLVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMT SDRLPTEIPDLSERLVSRFTWGLQVEITPPDLETRIAILRRKAETEGLTIDDGTLNYIAS QVDTNIRELEGALVKVQAYATIEKADIDVNLAREALVDLKLVQKNRGLQISKIQEVVANY FQTSTAELKGKKRVRQIVVPRQIAMYLSRELTDASLPKIGQEFGGKDHTTVMHAYDKIDK QMKLDSDIKTAVFDLKQILEH >gi|227862862|gb|ACKR01000037.1| GENE 2 1921 - 3051 1091 376 aa, chain + ## HITS:1 COG:SA0002 KEGG:ns NR:ns ## COG: SA0002 COG0592 # Protein_GI_number: 15925707 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Staphylococcus aureus N315 # 1 376 2 377 377 301 44.0 1e-81 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDKLTLTGSDTDISIEIQIPVN DDLNVESTGSIVLPARFFSEIVKKLPGKDFSFEVKESFQTQIISENSEFTINGLDANNYP RLPEIPDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPDKIKAVATDSHRL SQRTIALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLSFYSRL LDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGLNNVVTLTLDIENQSAKLS GKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVIMSFTKPLRPFIINPD KEDIEFVQLITPVRTY Prediction of potential genes in microbial genomes Time: Wed May 25 06:19:55 2011 Seq name: gi|227862841|gb|ACKR01000038.1| Lactobacillus crispatus JV-V01 contig00039, whole genome shotgun sequence Length of sequence - 21773 bp Number of predicted genes - 20, with homology - 19 Number of transcription units - 10, operones - 6 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 21 - 80 6.8 1 1 Op 1 9/0.000 + CDS 157 - 378 62 ## COG2501 Uncharacterized conserved protein 2 1 Op 2 9/0.000 + CDS 387 - 1514 799 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 3 1 Op 3 24/0.000 + CDS 1515 - 3479 2349 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 4 1 Op 4 . + CDS 3489 - 5969 2579 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Term 6075 - 6130 -0.2 + Prom 6051 - 6110 7.6 5 2 Op 1 24/0.000 + CDS 6186 - 6482 507 ## PROTEIN SUPPORTED gi|227877547|ref|ZP_03995607.1| 30S ribosomal protein S6 6 2 Op 2 21/0.000 + CDS 6532 - 7050 579 ## COG0629 Single-stranded DNA-binding protein 7 2 Op 3 . + CDS 7078 - 7314 392 ## PROTEIN SUPPORTED gi|58336363|ref|YP_192948.1| 30S ribosomal protein S18 + Term 7337 - 7373 4.0 + Prom 7321 - 7380 6.4 8 3 Op 1 9/0.000 + CDS 7478 - 9499 798 ## PROTEIN SUPPORTED gi|194246575|ref|YP_002004214.1| 50S ribosomal protein L9 9 3 Op 2 16/0.000 + CDS 9511 - 9966 759 ## PROTEIN SUPPORTED gi|227877551|ref|ZP_03995611.1| ribosomal protein L9 10 3 Op 3 . + CDS 9986 - 11377 1214 ## COG0305 Replicative DNA helicase + Term 11383 - 11409 0.3 + Prom 11391 - 11450 6.6 11 4 Tu 1 . + CDS 11545 - 12480 1111 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component + Term 12498 - 12541 6.8 + Prom 12505 - 12564 8.1 12 5 Tu 1 . + CDS 12590 - 13519 1181 ## COG1307 Uncharacterized protein conserved in bacteria + Prom 13531 - 13590 5.3 13 6 Tu 1 . + CDS 13686 - 15221 801 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 15255 - 15300 -0.8 + Prom 15243 - 15302 8.7 14 7 Tu 1 . + CDS 15352 - 16230 1153 ## COG1940 Transcriptional regulator/sugar kinase + Term 16273 - 16321 2.1 + Prom 16281 - 16340 4.1 15 8 Op 1 . + CDS 16378 - 16569 267 ## 16 8 Op 2 . + CDS 16620 - 16877 143 ## COG2261 Predicted membrane protein + Term 16889 - 16935 6.8 - Term 16884 - 16914 2.0 17 9 Op 1 . - CDS 16937 - 18166 1148 ## LCRIS_00021 hypothetical protein - Prom 18194 - 18253 7.7 - Term 18218 - 18251 3.1 18 9 Op 2 . - CDS 18264 - 18965 786 ## COG1285 Uncharacterized membrane protein - Prom 19157 - 19216 76.6 + TRNA 19140 - 19212 84.6 # Thr AGT 0 0 19 10 Op 1 . - CDS 19648 - 20544 716 ## gi|227877561|ref|ZP_03995621.1| conserved hypothetical protein 20 10 Op 2 . - CDS 20566 - 21582 779 ## gi|227877562|ref|ZP_03995622.1| possible S-layer protein - Prom 21670 - 21729 7.5 Predicted protein(s) >gi|227862841|gb|ACKR01000038.1| GENE 1 157 - 378 62 73 aa, chain + ## HITS:1 COG:BH0003 KEGG:ns NR:ns ## COG: BH0003 COG2501 # Protein_GI_number: 15612566 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 15 65 11 61 73 63 58.0 6e-11 MKVSIIKYFKVDGDHITLGQFLKEESIISSGGQAKWYLKDNPVTLNGELEDRRGKKMHVG DHVVVNGQEYEFR >gi|227862841|gb|ACKR01000038.1| GENE 2 387 - 1514 799 375 aa, chain + ## HITS:1 COG:BH0004 KEGG:ns NR:ns ## COG: BH0004 COG1195 # Protein_GI_number: 15612567 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Bacillus halodurans # 1 369 1 367 371 325 45.0 8e-89 MYLDHFTVQNFRNLKKLDVNFDSNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNNDKDL IGFGGEFTNLLGHVHKSQVDLDLRVLITQKGKKVWINRVEQAKLSKYVGQLNAILFSPED LELIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLIQKNNYLKQLAKGKAKDQVFLDV LSDQLAGIAAEVVFRRFKFLKYLSHYASDAYAHISLGSEQLSIAYHPSVADIQADDSTEE IYQKILASYARNKASEIRKGTTTSGPHRDDIEFKLDGQNAHLYASQGQQRSIALSVKLAE IQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYIHGKTQTFITTTDLEGISWEIIKKPR VYHIQSGKISLEKEN >gi|227862841|gb|ACKR01000038.1| GENE 3 1515 - 3479 2349 654 aa, chain + ## HITS:1 COG:lin0006 KEGG:ns NR:ns ## COG: lin0006 COG0187 # Protein_GI_number: 16799085 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Listeria innocua # 5 653 2 645 646 813 66.0 0 MADNSKENLEKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEII DNSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEKTGRPALETVFTVLHAGGKF GGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDSKKYFIDFDHGRVKDEMKQIGTVPLDE HGTIVHFYPDPDIFTETIVFDDKILKNRIRELAFLNKGLTLTFTDKRKDTAETDVYKFEG GIKEYVAFLNKGQEVLFDDPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGGM HEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVKHPSPQFEGQTKTKL GNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEI ANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDR ILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPM IDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPSPKPTVQRYKGLGEMDPEQL WETTMNPENRRLDRVSPEYAKDADAVFELLMGNEVSPRRDFIQKNAKYVENLDA >gi|227862841|gb|ACKR01000038.1| GENE 4 3489 - 5969 2579 826 aa, chain + ## HITS:1 COG:SP1219 KEGG:ns NR:ns ## COG: SP1219 COG0188 # Protein_GI_number: 15901081 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pneumoniae TIGR4 # 7 815 2 811 822 1022 62.0 0 MDENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG MTTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHFLTLKQMLQYYLDHQ EDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISRFGLDD KQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILSKPERIDQIIYDELLDIQKR FGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRGGKGIKGMG VQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAYEIPEYGRAAKGLPVVNLLQLEKGEKV QTVINIPEGADDNYLFFVTKMGTVKRTHVSEFSNIRNSGLIALTLKDGDELSNVLTTDGK QNILIGTHLGYAVTFNEGDVRAMGRTAAGVRGINLREHDYVVGSGILGADDQVLVISEKG YGKRTPASEYPVKGRGGKGIKTANITEKNGPLAGVTIINSNNDVMVITTDGIMIRFRIDD VSQTGRSTMGVRLIKVSDDSQVASLTVVPTEEEQDQTGDDDDSKNG >gi|227862841|gb|ACKR01000038.1| GENE 5 6186 - 6482 507 98 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227877547|ref|ZP_03995607.1| 30S ribosomal protein S6 [Lactobacillus crispatus JV-V01] # 1 98 1 98 98 199 100 1e-50 MATTKYEVTYIIKPDVDEDNKKALVENYDKVIADNGGTMVESKDWGQRRFAYEIDKYREG TYHIMTFTADNADAVNEFSRLSKIDNAILRSMTVKLDK >gi|227862841|gb|ACKR01000038.1| GENE 6 6532 - 7050 579 172 aa, chain + ## HITS:1 COG:L0302 KEGG:ns NR:ns ## COG: L0302 COG0629 # Protein_GI_number: 15674172 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Lactococcus lactis # 1 172 1 166 166 161 56.0 4e-40 MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFVSCVIWRKSAEN FCNFTSKGSLVGIDGRIQTRSYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGYTP NSGNASSQPANNFPNNGGSQGNSQTNNNQNNSQDPFSGSGDTIDISDDDLPF >gi|227862841|gb|ACKR01000038.1| GENE 7 7078 - 7314 392 78 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58336363|ref|YP_192948.1| 30S ribosomal protein S18 [Lactobacillus acidophilus NCFM] # 1 78 1 78 78 155 100 2e-37 MAQQRRGGRRRRKVDYIAANHIDYVDYKDVDLLKRFISERGKILPRRVTGTSAKNQRKVA NAIKRARIMGLLPFVAED >gi|227862841|gb|ACKR01000038.1| GENE 8 7478 - 9499 798 673 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|194246575|ref|YP_002004214.1| 50S ribosomal protein L9 [Candidatus Phytoplasma mali] # 46 669 62 683 837 311 31 1e-100 MKDFLRKLELPEFIKDSRLTASIIIALSLSLLGSIIAMIMNPLFGLAMLLVFILTVAFAI YGTYILAGNANSFAVNLSYRIKRSEQEAMIKMPLGILLYDSDHQIQWVNPYLQLYLKSTD LVGHTIESVDPDLNKLLNEAIEAKTAENHLVDWDGHRFEMVVQNNLGVIYLLDITRYAKI EDKYKAERLAIGQIFIDNYDELSEAMHDQELTSMSSYVQNTLSDYAKKFNAYLKRIDEDH FLILIHMQELAEMEKDKFSVLDKVRQETSRNNTPLTLSMGIAFGSDSLSEIANQAQSNLD LALGRGGDQVVLRQPGKDARFYGGKSNPMEKRTRVRARMVSQAISELFKDADQVFVVGHQ RPDMDSVGSGIGVVKLARLHGVKANFVLDTNKTNYDVGRLVTLMQQKNQDKDIFINPDVA LAQVTDKSMLVMVDHSKYSITYSRSLYDRLKNRIIVIDHHRRGEEFPENPMLTYVEPYAS SACELVTEMIEYQQPANGKRVLTDIEATAMLAGIVVDSKEFSLRTGTRTFDAASYLRSIG ADSAVVSMLLKEDIDSFLERTHLVATLKMVKPHMAVLCGPDDKIIDPIITAQAADTALDL ENVGASFAITRRSDNTIGISARSMGKINVQIIMEKLGGGGHLSNAATQIKDVTIEEAKQK LLDAIDEYEKEND >gi|227862841|gb|ACKR01000038.1| GENE 9 9511 - 9966 759 151 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227877551|ref|ZP_03995611.1| ribosomal protein L9 [Lactobacillus crispatus JV-V01] # 1 151 1 151 151 296 100 6e-80 MKVIFTQDVRGRGKRGQVKDVPDGYAQNYLIKRGLAKEATKGNMNTLKRVEANEKAAYEA EKAEAEKIKAELEKDDTVVNFKSKAGTDSRLFGSISSKKIVEGLEKQYGIKVDKRKLNLP EPIKTLGYTNVHAKLFKGVEATIRVHVTEQD >gi|227862841|gb|ACKR01000038.1| GENE 10 9986 - 11377 1214 463 aa, chain + ## HITS:1 COG:SP2203 KEGG:ns NR:ns ## COG: SP2203 COG0305 # Protein_GI_number: 15902010 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Streptococcus pneumoniae TIGR4 # 10 454 11 445 450 454 55.0 1e-127 MDNIVSQQIPHDRDAERAVLGAIFIDPEAIADASAVVQPEDFYERANQIVFQAMLDLSDR GDAIDTLTLQDELNKRNQLEDIGGIGYVSELAMATPTAAHVTYYAKIVHRKALLRRLISA SQKIISNAIDGSDDVTDILDDAESEIMNVSSENSTGGFRTIKEIVNSAINDINNIPDDGN MVTGLPTGFAELDKMTTGFHDDELIIVAARPGVGKTSFALNIAQNVGLHTEKSVAMFSLE MSGEQLVQRMLASEGLINSQHLRTGQLDEEEWRKLVVASGSLAGAQIFIDDTPGIKMSEI RAKSRRLAKEKGNLGLIVIDYLQLIEGPRSESRQQEVSAISRQLKKLAKELHVPVIALSQ LSRSVEQRQDKRPVLSDIRESGSIEQDADIVSFLYRDDYYRDEPDDGESSGSQDEVGAED DNGEVEVIIEKNRSGSRGTVKLMFSKPFNRFSNLDYAHDPNGN >gi|227862841|gb|ACKR01000038.1| GENE 11 11545 - 12480 1111 311 aa, chain + ## HITS:1 COG:SA0138 KEGG:ns NR:ns ## COG: SA0138 COG3221 # Protein_GI_number: 15925847 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 23 303 34 314 318 279 56.0 5e-75 MKFKKILVGACAVLAAVSLAACSNGKKSSSSSSEPKELNVEFVPSTQANKMEAKAKPLGT LLQKQLHIPVHVTVSTDYSGLVEAMSSKKVDVGFMPPYSYILAHKKGIADVLLQAERYGY DEPSGKMNHTLMHKYRGMIVVKKGSKIKSWKDLKGKKIAIGDPSSSSGYVYPVAELYKKG LNVTKDCKLVNVKGDDQEVLSVLNGDVDAAFVFSDARNIAAKDDKKAMTDVVPIYFTKWI PNDTIAVRKDMPKKFRVKLAKAFKNIAKSKKGKQIIESIYNHYGYVEAKDSDFDGLRQYQ KIVNKATGGSN >gi|227862841|gb|ACKR01000038.1| GENE 12 12590 - 13519 1181 309 aa, chain + ## HITS:1 COG:BS_yviA KEGG:ns NR:ns ## COG: BS_yviA COG1307 # Protein_GI_number: 16080601 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 283 1 279 281 190 37.0 3e-48 MKIAVLTDSSAYLTKEQQEKYQIDVLPIPIIWGKKVYHDLVDIGYEEFYQKLNTAKELPT TSQPSIGDLKQKIDEYVAAGYTDVIVITLSSGISSYFSTVQSVAAEEDRIKVHPFDSKIT CAGEADYAMLAGRLIEAGADIDLIMHDLKDLQKKMDVRFMVDDLSHLKRTGRLSNAASFV GTLFKIKPILSMDVQNEGHISAIAKERQYKRAYKHVQNDFDNLTKNMPYKIQDTIFDSLD PEKKQAWLDDYRAKFPKYKFDTSIIGPVVGVHVGQGTMSMIWCRDLDTYFDENGQPIKGI ESQAVVDPE >gi|227862841|gb|ACKR01000038.1| GENE 13 13686 - 15221 801 511 aa, chain + ## HITS:1 COG:YPO1735 KEGG:ns NR:ns ## COG: YPO1735 COG1132 # Protein_GI_number: 16121992 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Yersinia pestis # 37 509 60 544 572 126 25.0 1e-28 MVITSAFASLDGVISPYVIGKITNTLSQKHFSEIPKILLLYLLMMLFLNVSFYLWQFCWG KITKSSNELLRSTAFNNFIASPSEKKITNTLNFINVNVKQIENQCIDSTIMLVYCVEQAI VSLVYILSINGIAAMVFLVCGLIPSVIPRLTRNWVQTGTKKWNSSYENYNQKTSDAVHGF DTIRHANGDNRFKIFVQKALMGEEKKYFLMNFRRNTSNFLAQVSYSLSMVISLAVGTFFV INGQILVGGLISLFLASDRLTSPIISIVNIANQLTSVSPLLKNKALQKSKKQEFNNLDFT KLPNQEKIIFDHCNLGYSNKAILKNINLTVSKGNKVLIIGRSGIGKSTLFKTLLNEIPLL KGKILVDDSLNQANFYTNFGIVSQDTYIFAESLRFNLTLGKDFPTQQVINVLKTVKLSYL ANEKSLDMQIGEKGLSLSGGEKRKLEIARALLNQKSILLVDEGLSGLDEESNKQIFALLQ SLPQTVIEIEHAVSPEEKNQFNQIIDLGAQY >gi|227862841|gb|ACKR01000038.1| GENE 14 15352 - 16230 1153 292 aa, chain + ## HITS:1 COG:SP1721 KEGG:ns NR:ns ## COG: SP1721 COG1940 # Protein_GI_number: 15901554 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Streptococcus pneumoniae TIGR4 # 5 292 3 295 295 265 48.0 7e-71 MAEKKYVGSIEAGGTKFIVAVQDVETGKEVARDRIPTTTNKETLQKTAEFFKKHPVDALG IGTFGPIDINPNSRTYGYILDTPKPGWSGTDVKGFFEKELGIPVAMTTDVNASCYGEYVA RGRNDSKSYFYATVGTGVGAGIVQAGKLLGLNNHPEMGHMLVRRYPGDDYEGHCPFHNDA CVEGMSAGPSLEGRTGIPGEKLSRDNKVFTYSAYYIAQMLFNVYMAARPDVMIVGGSVLN EDDLVKVRKFFDEFNNNYVATPDLNELIVRPAVAHNGSATLGDFELAKNLLK >gi|227862841|gb|ACKR01000038.1| GENE 15 16378 - 16569 267 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNKSDSGLKDKVISKVKEVEGKITGDKSREVQGKAQQAKGKVKDKAKKLKDDLEKDHQID EDC >gi|227862841|gb|ACKR01000038.1| GENE 16 16620 - 16877 143 85 aa, chain + ## HITS:1 COG:SPy1265 KEGG:ns NR:ns ## COG: SPy1265 COG2261 # Protein_GI_number: 15675224 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 2 78 1 77 82 70 63.0 9e-13 MLSWIWVLIVGAIIGLIAGFITGKGGSMGFLANLIAGLVGSTLGQAIFGSWGPQMAGMAI VPSILGAVILVLVVSFVLGMLRKTE >gi|227862841|gb|ACKR01000038.1| GENE 17 16937 - 18166 1148 409 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00021 NR:ns ## KEGG: LCRIS_00021 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 409 1 409 409 796 94.0 0 MAGTLDYLRWRGDLSFKERPFNSVDASLFASIIYLPVDKSAKEHTLSEVAEKLHVLPSFQ VQMKDLAGDQILLLPKSPRLGDIKILNWTNRLEKDPYPLQFTAATFRLNDNTIIIVYRGT DNSIIGWNEDMNMNYMPKVYGQDVAANYLKEMAAAFPHDKIYLAGHSKGGNYAEYALSVA EPKLQDRIIKAFSFDGPGFFHQVWKAPGFVRALPKMKTYLPEASIIGTMLDHPEHVLIVK STAPMVQQHDPRRWSVGRDSFVLAEGLTSGARSLRHFFIDFNHSIPEKQRGALWDALFQA FDELNITDIFQITAHKLLGTVRFSRVIMSLEPETRRYVLHMFGEIINALRGNISLPFSES DFALYPKSNDSNKAPIFFEFYDKTVPSLLPEEIKQRFLAEKENERKKLK >gi|227862841|gb|ACKR01000038.1| GENE 18 18264 - 18965 786 233 aa, chain - ## HITS:1 COG:CAC3658 KEGG:ns NR:ns ## COG: CAC3658 COG1285 # Protein_GI_number: 15896891 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Clostridium acetobutylicum # 10 228 7 229 229 175 41.0 5e-44 MQTLAPITTELDWLLRIVVAAFCGALIGYERAIQRKSAGVRTHIVVAIASALFMIVSKYG FTDLLSMHDIALDPSRIAAQIVTGISFIGAGTILVRKEQVSGLTTAAGVWATAAIGMAVG AGMYFIGILSTALLFIIQMIFHDDVIINKITPHVRFNIQIVAINQHHILSKIRQELADNH VENVTVKILDVSDNRIVLYVDGIINNKIDENSIVMNLRKYPDITRISYTRGGM >gi|227862841|gb|ACKR01000038.1| GENE 19 19648 - 20544 716 298 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227877561|ref|ZP_03995621.1| ## NR: gi|227877561|ref|ZP_03995621.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 298 1 298 298 503 100.0 1e-141 MLQKKNVTKLLSTITLSSALLLSATVVAGNEQANVVEASTNSVRLTHNAYVYNYKGKRIK GARTLKKGRSVKAYRTKIIHGKKYLYVYAEKKDSRGKTWYKVGTNKWISSELTHKVSEPD TSKTSAITKSTSDETNTQSANSSNFIKHNETTNTKPNNEYTNIKDSDFATKLEQEFIAQL NQLRQSKGLNSLTLDTSLQEYARTRATEANTSFSHTRPDGSRTQYAEVLAGGAVDNTDTP STQAKICLNNFIYHDAGSNWGHRDILLSGQYTKIGVGIAWNPKSSNGFLGYRLIANLK >gi|227862841|gb|ACKR01000038.1| GENE 20 20566 - 21582 779 338 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227877562|ref|ZP_03995622.1| ## NR: gi|227877562|ref|ZP_03995622.1| possible S-layer protein [Lactobacillus crispatus JV-V01] # 1 338 1 338 338 598 100.0 1e-169 MLQKKKVVKLLSTITLSSTLLLSATVVTSNEQANVVEASTKNVRLTHNAYVYNYKGNRIR GVKLLKKGKYVKAYRTKKIRGTKYLYIGSHHYIRLANVQNTKSNYLFTAKITDNGLGETY KAPNQSPTGEYIGVGQSVKVYAQEKVNDKIWYKIGDNKWILATDTDKFYTKRNSSKNCQK ADSQSITQQDNNSASNEQTYSNIINSNFANETEQSFVTQLNELRRSNGLAPLSIDNTLQS YAVTRANEANTKFDHIRPDGSRTQYAEVLAGGTVNDTSTPEQEASQQLRSFIYHDAGSNW GHRDILLSSQYTKIGVGFAFDPVLSNGFLGYSLIANLK Prediction of potential genes in microbial genomes Time: Wed May 25 06:20:28 2011 Seq name: gi|227862839|gb|ACKR01000039.1| Lactobacillus crispatus JV-V01 contig00040, whole genome shotgun sequence Length of sequence - 221 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 221 83 ## LGAS_0410 adhesion exoprotein Predicted protein(s) >gi|227862839|gb|ACKR01000039.1| GENE 1 2 - 221 83 73 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0410 NR:ns ## KEGG: LGAS_0410 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 3 73 1950 2021 2457 65 58.0 5e-10 VNKPAGSTVDASQETTLTRTATVDEVTGQVTYGKWTTSKLDKYNAPEIPGYTPSQAEVPA VDQVTVDYTDPKI Prediction of potential genes in microbial genomes Time: Wed May 25 06:20:30 2011 Seq name: gi|227862837|gb|ACKR01000040.1| Lactobacillus crispatus JV-V01 contig00041, whole genome shotgun sequence Length of sequence - 284 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:20:34 2011 Seq name: gi|227862826|gb|ACKR01000041.1| Lactobacillus crispatus JV-V01 contig00042, whole genome shotgun sequence Length of sequence - 9288 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 5, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 40 - 99 5.4 1 1 Op 1 . + CDS 138 - 1130 203 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 2 1 Op 2 . + CDS 1140 - 1790 567 ## COG0586 Uncharacterized membrane-associated protein + Term 2029 - 2074 3.1 - Term 1767 - 1797 1.2 3 2 Op 1 3/0.000 - CDS 1802 - 2410 278 ## COG4478 Predicted membrane protein 4 2 Op 2 1/0.333 - CDS 2407 - 3177 835 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 5 2 Op 3 2/0.333 - CDS 3177 - 3767 574 ## COG4470 Uncharacterized protein conserved in bacteria 6 2 Op 4 . - CDS 3760 - 5142 1324 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 7 2 Op 5 . - CDS 5158 - 5478 419 ## LCRIS_00432 hypothetical protein - Prom 5524 - 5583 3.7 + Prom 5375 - 5434 3.4 8 3 Tu 1 . + CDS 5592 - 6962 826 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Term 6971 - 6998 0.1 - Term 6953 - 6993 7.3 9 4 Tu 1 . - CDS 7004 - 8005 1259 ## COG1609 Transcriptional regulators - Prom 8163 - 8222 6.3 + Prom 8069 - 8128 3.8 10 5 Tu 1 . + CDS 8156 - 9262 1399 ## COG0006 Xaa-Pro aminopeptidase Predicted protein(s) >gi|227862826|gb|ACKR01000041.1| GENE 1 138 - 1130 203 330 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 18 304 2 292 306 82 27 9e-16 MLKLIHHYFEEVIKIKKFDLTIIGGGPVGLFAARFAHLHGLKTVLFDSLSETGGQPQMLY PFKKIKDIPAYDSITGTELIDNLRHNLTDTTIFTNHKVENVTKQKDGFIIDDIVASRSIL ITTGAGAFKPKALPLSMDDDTQKRIHYFIKDPQKFVGQTVGVFGGGDSALDLALELANYA NVKIIHRRNQFRGLESNVKKLKSLKNVEILTPYLPKQINLVDNQLNVNLKEMGKDSLTNI KLDQAVVAYGFKANNRFVKKWGIDLAGAQIKVNSTMQTNIAAVYAAGDVVTYPGRVPLIA LGFGEAQIAITAIMRDLFPEKTLTIHSTSF >gi|227862826|gb|ACKR01000041.1| GENE 2 1140 - 1790 567 216 aa, chain + ## HITS:1 COG:lin0035 KEGG:ns NR:ns ## COG: lin0035 COG0586 # Protein_GI_number: 16799114 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Listeria innocua # 3 212 7 216 219 193 53.0 3e-49 MSLIDFILHIDDHLITIVNQFGGWSYLILFAIIFIETGLVVFPFLPGDSLIFAASAMAAN PKYGLNIWLVYLIVAFAAIIGDSINYEIGAWSTRAGEKHSWFNKLINQNNRLAAEKFFER HGPITIIIGRFIPFIRTFVPFIFGGSKMHYGKFITYNILGGLLWTGLFTIIGFFFGNIPF VKDHFSMIVIAIILVSVVPIAIVAIKKKISLKKEFH >gi|227862826|gb|ACKR01000041.1| GENE 3 1802 - 2410 278 202 aa, chain - ## HITS:1 COG:L157321 KEGG:ns NR:ns ## COG: L157321 COG4478 # Protein_GI_number: 15673126 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 12 195 9 190 205 95 36.0 7e-20 MITKNNIFSLIYHFLFAVSSSIIGAIVASWPLLFIFMIVQKTYETVHMSLFKVMHNYNQL MFYLLWPFKKQLKMDNFPTSANAAEHFAECKHLFILTLLVFIICIIVHFVFKRQKKKLLL NLDKSVALILLLLPIIIFPFAVTNFDSFFVIFHHILFNNSDWLFDPNTDPIINVLTEGFF ASCFAVAGVIYELYFAEKLLRK >gi|227862826|gb|ACKR01000041.1| GENE 4 2407 - 3177 835 256 aa, chain - ## HITS:1 COG:lin2500 KEGG:ns NR:ns ## COG: lin2500 COG0647 # Protein_GI_number: 16801562 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Listeria innocua # 1 256 1 254 255 225 45.0 6e-59 MKDYRVFLIDLDGTVYRGKETVESGVRFVHRLVQAGKDYLFLTNNTTRTPQMVVDKLKGH GIETDTDHVYTPSMATASYILQREHKEKIGLYIIGQIGLWRELLQHPEFELNEENPDYVI VGMDTDLTYHKVRVASRAIRRGATFIGTNADMNLPAEDELIPGNGSQCAFVAAASGVEPL YIGKPESIIVKMALDKVGYSKDEALLVGDNYDTDIKAGFNSGVDQLLTLTGVTTKVDIAD KRQPTILVNNLDEFEL >gi|227862826|gb|ACKR01000041.1| GENE 5 3177 - 3767 574 196 aa, chain - ## HITS:1 COG:SA0786 KEGG:ns NR:ns ## COG: SA0786 COG4470 # Protein_GI_number: 15926514 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 27 110 2 86 127 67 44.0 1e-11 MTEENKFEQEQPIRHPLADVVQDGKSIKIGAQLYSIIVNERDALDLESLRKKYDPYLDQY DYLVGDVSSEHLRLKGFYKDGARTAIDKKEMAIVDYLTEYCNPGGPYFILELTHPVHYYQ HQRTKIRRSRERRERDFGKNERYHARRRNYRKNKNENNPFKKRRVHQTKFKKKQSIAVKK EFGRHHSFIIKKRKGN >gi|227862826|gb|ACKR01000041.1| GENE 6 3760 - 5142 1324 460 aa, chain - ## HITS:1 COG:lin2502 KEGG:ns NR:ns ## COG: lin2502 COG0737 # Protein_GI_number: 16801564 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Listeria innocua # 1 450 2 457 463 300 34.0 3e-81 MEQLRILHTNDLHSHFEHFPKIGRYLKKAQADQSVDGIYTFDAGDFMDRSHPLTDATEGQ ANIKLMNGFNYDAITIGNNEGISNPHWVLEHLFDHADFPTVLANLREEDESMPKWAVGHM FLTTKKKTRIALIGLTAAYPMTYGPNHWHVKMLGDSMDHELAQIEGKYDVLILLTHVGLK MDRWLAKHYPQINLIVGGHSHDLIEHGEKVGHTWITQTGKWGNYVGDIHLELEDHHVIKV VPRTISTASMPEEPEDKAVIQGYYDEGKRLLSERKVANLPEKFADDKVAAVQVSLDAIAD FAKTDLAILSSGLFLTPFKSGIITQYDLQNALPHPMHVVRSTLKGYDLWRLVMEIEKNRH YLDHFPLQGMSFRGKIFGQMYSKGIKVDMRRRVVYVNGHEIDPQKEYKIACLDHYVLVPF FPTLAIVGENEFLFPQFLREVVGKYLAEKYPLTARSEKDD >gi|227862826|gb|ACKR01000041.1| GENE 7 5158 - 5478 419 106 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00432 NR:ns ## KEGG: LCRIS_00432 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 106 1 106 106 193 100.0 1e-48 MEQLDLIEEVTRNDGSRYYEISNIDQNGIAELAADHGLIKKVKILQLNIPRTKALIAYEK YINDTYDLQTLTNESDWKNPKWVEWDKPKGKILDAYNMILKANRIG >gi|227862826|gb|ACKR01000041.1| GENE 8 5592 - 6962 826 456 aa, chain + ## HITS:1 COG:lin0625_2 KEGG:ns NR:ns ## COG: lin0625_2 COG0584 # Protein_GI_number: 16799700 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Listeria innocua # 28 257 1 224 243 87 27.0 7e-17 MKFKSRLVWVLFFSLVFFINSGFTVVGHRGDPIKYPEETIQADDSAFNSGADYVELDLQL SKDGVPVIAHDDDLFRVTHTHAIVSQNNFTALKQLQYDNGEHVMSLSELFKHYQNKPNTK FVLETKIDHGLNPSYELEDKIAQIVKKYHMQKRIMIHSFSAASLFHFRKIMPEAYLILIV GSLKRINFSNLPQVNAINASSDIVQEHPFLIHWLHKLHKQLFVWAEMDESPALWHWLINR NVDGVVTNYPATGFKYKLAKSGTKKYAINRTGIYFGKTKAATMMNPYVRIKEKKYVQPGQ KVNVTYGVRVDDRLFYQIAEKTFISAEFVNFDLTKRDIAPYQNKKIIAKPNQKVTIYRYP DNQAKTQQKLPANQLLKIQNFNGSPKNMWIYTKLGWVKAKDILFYGFFSQDDFRDYQSLP RVSQYTNLVLLPYNPNQAIAPTTFTQKLQQINKIIY >gi|227862826|gb|ACKR01000041.1| GENE 9 7004 - 8005 1259 333 aa, chain - ## HITS:1 COG:lin1640 KEGG:ns NR:ns ## COG: lin1640 COG1609 # Protein_GI_number: 16800708 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 6 322 3 323 335 295 51.0 9e-80 MHKQEVTIYDVAREAKVSMATVSRVVNGNSNVRKETRDRVLEVIKRLHYQPNAVAQGLAS KRTTTVGLIVPDLTNLYFAELSKGIDDIALLYKYNIIITSIENRLMKEDQVIQSLLNKQV DGVIYMSNRLSDAAADAFKRTDTPVVLAGTKDNRDDFASVTIDYKKADTEALNLMYHDGK KHLGIVVGDQDAVVNSENRIPAYEEFMEENDLGTPRIYTDIKDYSDGYNLYPQLVKDGVD GVIVTRDISSVGILNSAMDAGKKVPEDLEIVTASATQLASVVRPALTTIKQPLYDMGAVA MRMLTKLMNNEEVDDTHIVLPYELVKKQSTLNQ >gi|227862826|gb|ACKR01000041.1| GENE 10 8156 - 9262 1399 368 aa, chain + ## HITS:1 COG:L96847 KEGG:ns NR:ns ## COG: L96847 COG0006 # Protein_GI_number: 15673631 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Lactococcus lactis # 3 364 4 362 362 377 51.0 1e-104 MNLDKLQQWLQDSNNDLAYISNPITISYFTGYSMEPHERIFALIVLKDAEPFIFCPALNV EEAKASAWDGDVIGYLDSENPWSIIATNVKKRTHDTHNWAIEKDDLSVAHYQLLRGEFPN ASFTNDVSPFIEKIRLYKTPEEIKKLQGAGAEADFAFKIGFDAIRTGVTERSIAGQIDYQ LKIQKGVMHESFETIVQAGKNAANPHLGPTMNTVQPNELVLFDLGTMHDGYASDSSRTVA YGEPTAKQREIYEVDREAQQAAIEAAKPGITAEELDSVARDIITKAGYGEYFIHRLGHGI GKNVHEYPSIVQGNDLVLEEGMCFSIEPGIYIPGFAGVRIEDCGVVTKDGFETFTHTDKD LKVLPLKD Prediction of potential genes in microbial genomes Time: Wed May 25 06:20:39 2011 Seq name: gi|227862817|gb|ACKR01000042.1| Lactobacillus crispatus JV-V01 contig00043, whole genome shotgun sequence Length of sequence - 6538 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 3, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 36 - 404 567 ## LCRIS_00428 hypothetical protein 2 1 Op 2 . - CDS 422 - 847 407 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain - Prom 868 - 927 7.5 + Prom 869 - 928 5.9 3 2 Tu 1 . + CDS 956 - 1801 813 ## COG0668 Small-conductance mechanosensitive channel - Term 1789 - 1855 18.0 4 3 Op 1 . - CDS 1871 - 2734 592 ## COG1131 ABC-type multidrug transport system, ATPase component 5 3 Op 2 . - CDS 2743 - 3990 688 ## LJ1165 hypothetical protein 6 3 Op 3 . - CDS 3987 - 5102 648 ## LJ1164 hypothetical protein 7 3 Op 4 . - CDS 5115 - 6380 600 ## SAB1681c hypothetical protein 8 3 Op 5 . - CDS 6361 - 6528 158 ## gi|256849044|ref|ZP_05554477.1| predicted protein Predicted protein(s) >gi|227862817|gb|ACKR01000042.1| GENE 1 36 - 404 567 122 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00428 NR:ns ## KEGG: LCRIS_00428 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 122 1 122 122 145 100.0 3e-34 MKKFASFLLGAVAGCAAGFLAGSLLVSDEQVDDVKNKIKDNDKLQDLKKKYDNGTEIVKN QLASFPKNVEDDSELKDFDDIVIDDSNKDDDDSENAEESVNDLNNAEKDDTDAASTSEKP QA >gi|227862817|gb|ACKR01000042.1| GENE 2 422 - 847 407 141 aa, chain - ## HITS:1 COG:SPy0587 KEGG:ns NR:ns ## COG: SPy0587 COG4768 # Protein_GI_number: 15674673 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Streptococcus pyogenes M1 GAS # 11 137 9 133 135 65 32.0 2e-11 MTISYGALAGLIAAIAFLILVLFTIPMLIRTAKLLKETSATIQTTNESMKKISEDMDGLM DQTSDLLDKTNDLMTDVNGKMKTLDPVVKAAADLGESVSELNDSSKKIAKRFSSNHLSRT GLISSIAATAFARRKRRRGEN >gi|227862817|gb|ACKR01000042.1| GENE 3 956 - 1801 813 281 aa, chain + ## HITS:1 COG:SPy1897 KEGG:ns NR:ns ## COG: SPy1897 COG0668 # Protein_GI_number: 15675710 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Streptococcus pyogenes M1 GAS # 19 267 20 267 281 155 36.0 7e-38 MKIPTHINIQKIEIDWSKISQNLLSIIWQLAITSLIFYLLSHFGHKIINNYLAKHNTVKN KRTRTITALINSVFQYTLIFFYLFGILSILGVPVGTLLASAGIFSLALGMGAQGFVSDLV NGFFILSEDQFDVGDLVQIGTNVGTVVQLGLRTTRLKGSDGSIIFIPNRNITIVQNLAHG GVALDINLDLDTKNDIDEVNKLIKECNRKIQPEKKTIVSGPTIVGVTEQTGKKFVYSIHF QVKPGKQSAVKNLYLTQYIQILRENNIVFASTERPAKTTAK >gi|227862817|gb|ACKR01000042.1| GENE 4 1871 - 2734 592 287 aa, chain - ## HITS:1 COG:BS_ydbJ KEGG:ns NR:ns ## COG: BS_ydbJ COG1131 # Protein_GI_number: 16077516 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus subtilis # 1 270 5 266 308 120 26.0 3e-27 MLKIHNVKLAFGEHVVLDEISLNFQIGTIVGLVAPNGTGKSTLLNVILHNLEPQAGYVEY DHLRYRSNREIIKLHRLICAFPDQSDLFPFMSGRDHLKLYADLWKNSDKNVDNIINKLQM EKYVDRPTQTYSLGMKQRLCFAMVVAADTPVMLLDEVMNGLDPQNVQLISDYLLDLKKEN KLIIMASHLLNNLQSYADRVLFLKAGKVIEDLDNQHQAKQYLKIEANAIAGTWLKDKRFT KLPDNKIIVPLDDNLGLDQLILKLTKEKIPYSVGRIDLAELFSKFYG >gi|227862817|gb|ACKR01000042.1| GENE 5 2743 - 3990 688 415 aa, chain - ## HITS:1 COG:no KEGG:LJ1165 NR:ns ## KEGG: LJ1165 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 415 3 416 417 472 59.0 1e-131 MKKQYFLFQLKIFLTNPKNVGLFFITIVLSLYFGLVSAPQHLVIENVDPYAISKEYQDDQ AFLKVAEKEFARANKGNSSFNPSEGAKDAVTTYPTVIKYDHERLKALKGNNWHLYTKYSS MWYKKMDDLIWVKENQNYMYPLEYYHNNNYKEDGHFGYQRTFHFYDGLLKSKAKLNKNVL EERTTLQRLQQSLSGWTMIILIIIIIIILFTADMVTNDQKYRTVVKNIPLSKRTILWLKT AVIEIGVLFNFLVAFAIVILCTAPKYGFGSLNLLTPIYTGRLYFKTPFVYQTLGQYCLEF LFFAVVLTFIFIRLTLLLSLIFRNEYVAVIVASIFAMSAKVLYFSLGMGFVYPFLKHLPM TYFTIGESLTSNLSYLMDSPGWGFNDGIIPLVTLAIVIELTIWLFCQFRKVVLVK >gi|227862817|gb|ACKR01000042.1| GENE 6 3987 - 5102 648 371 aa, chain - ## HITS:1 COG:no KEGG:LJ1164 NR:ns ## KEGG: LJ1164 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 368 1 369 369 315 47.0 2e-84 MKAQYFQANFRIARKSKKNMVLAVLLILCMIFSVLVVEEQKINDGYRQWRDYNESVHVNA DYFSSNLLRKKDYKQTFNNLNKQAEYLAGVQNGEMFDSAQDYLQNSKKLVQTMLAGYQNN YRGASTLNVPPKYQLWQKLVVYDYLYQNHLAIVMNSKESSTYLIYVLSLIGMFLFFYILF IASDSWMINLLHPTLLKNIPYQIRDEVKSKFIINLVLTLIPLVIGMLGSYLFAGFKNGFN SLNYPAVLYFTRISAVPLWFYCLLYLAYAVVLVIFVTSLAFLLNQLTHSVYLTIFIATLV YSISFLPGSIVKYLFFLPSVYLNISNVLDGTVSSQAIVPTNLITGMLVLLVWTVVLIMWF RHLVNQGGVKK >gi|227862817|gb|ACKR01000042.1| GENE 7 5115 - 6380 600 421 aa, chain - ## HITS:1 COG:no KEGG:SAB1681c NR:ns ## KEGG: SAB1681c # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_RF122 # Pathway: not_defined # 27 420 35 411 414 91 25.0 5e-17 MENLESKILFHSYKIGVNESKSSLKDISLADGLAGISIFLSNFYKSVDENTVKTKIRETN LKVITKVVKEINSQGTVLSLFGGLTGIGAACMEAAEYDNKYYSLLIKVTRTIVEKVNIVF TKSDIYTNLTFQIYDLFNGAVGISLFLVRAYKKGVDVPDIEKAIHHLTTFLVRISVIDTK CFSKSLLFLPAEELPKSGYAHQLLPKGALLIGEAHGLAGILGCLGTIYKIFPSSHLKEHI QNILKFLQEIRDDRVLYPEYVLVSKNDTPEIATHKLNGGWCFGSLGTTYSILLSSESISD DKFVDQAKKDLFFLLSNWKSDIRSDSLIMCHGLASQIYIANVLNKTYDDLHFEKIITKMI DFVVHAANWKEKYLFSDVAMSLKGKKRYERGILEGELGVSLVLNSIVSNVKWNTDWMFLF G >gi|227862817|gb|ACKR01000042.1| GENE 8 6361 - 6528 158 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256849044|ref|ZP_05554477.1| ## NR: gi|256849044|ref|ZP_05554477.1| predicted protein [Lactobacillus crispatus MV-1A-US] # 1 55 1 55 55 87 100.0 2e-16 MDDPFKYYSILMSFIHMHVNRYLAPSKKEEQNIYLSVLEYYRIKEDANKYGKFRK Prediction of potential genes in microbial genomes Time: Wed May 25 06:21:02 2011 Seq name: gi|227862811|gb|ACKR01000043.1| Lactobacillus crispatus JV-V01 contig00044, whole genome shotgun sequence Length of sequence - 3429 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 464 - 501 -0.9 1 1 Tu 1 . - CDS 537 - 1352 466 ## LCRIS_00641 transcriptional regulator, XRE family - Term 1367 - 1422 11.1 2 2 Op 1 3/0.000 - CDS 1430 - 2050 360 ## PROTEIN SUPPORTED gi|71274727|ref|ZP_00651015.1| Ham1-like protein 3 2 Op 2 . - CDS 2050 - 2856 805 ## COG0796 Glutamate racemase - Prom 2893 - 2952 9.1 + Prom 2823 - 2882 3.9 4 3 Tu 1 . + CDS 2933 - 3355 427 ## LCRIS_00421 hydrocarbon binding protein, V4R domain Predicted protein(s) >gi|227862811|gb|ACKR01000043.1| GENE 1 537 - 1352 466 271 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00641 NR:ns ## KEGG: LCRIS_00641 # Name: not_defined # Def: transcriptional regulator, XRE family # Organism: L.crispatus # Pathway: not_defined # 5 271 3 268 269 122 34.0 2e-26 MSKSIGEVLKEERRSLGLTQEQFIKGIISESFYSKVERGKNEIVAVDLLKILAANNISEE EFLSKLNVKENNNLEEDLKVQLLNAYSIHDKKKIRMLVQKIQNAAMDENTKISARLIDAV VNNKINDLTQREITQIKRKFFEVDDWTKNITTLQLFCNSMLLFDFDELVLFVKKMKKTCK GKLMKLPFNTQKIIASICINYFHNCYTNDCGQDASYGYEIIEELANIPDFGIYVIVTNFY KAYFQGNKKQSQQILDFLNQNGLNEISSRLP >gi|227862811|gb|ACKR01000043.1| GENE 2 1430 - 2050 360 206 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|71274727|ref|ZP_00651015.1| Ham1-like protein [Xylella fastidiosa Dixon] # 1 194 1 191 200 143 43 2e-34 MVKEILFATGNQGKAKELKEAFKQAGVNVEIKTNADLDNPPHPIESGHTFEANAKIKAHE LANFSKLPTIADDSGLIVDALNGEPGVRSARYAGEAHNDAKNNAKLLAELGGVPDEKRTA KFWTTIVVSMPGEFDKDLVVSGTCSGRILAAPRGEDGFGYDPLFYIPEKEKTFAQMTTDE KNEISHRGNAVRKLLQELPAWLEQFD >gi|227862811|gb|ACKR01000043.1| GENE 3 2050 - 2856 805 268 aa, chain - ## HITS:1 COG:L0120 KEGG:ns NR:ns ## COG: L0120 COG0796 # Protein_GI_number: 15673264 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Lactococcus lactis # 1 267 1 266 271 207 41.0 2e-53 MDNRPIGLLDSGLGGLSVAKKVIEKLPNESTVFIGDNAHMPYGDRTKEEIIELVRKSVQF LLEKNVKLIIFACNTATAMAMSTIQAEIDPQIIGVIQSGSLAASRTTKNKKVAVVSTKAT AESHAYAKEIRFRDPEIQVTELAAPKLAPLVEAQKDHETNLKVVKESLTPLQGKDFDTLI MGCTHYPLIQKEFKEAINDKNVTILDPADQVAQYTFNVMRRDGLFSDGNEKVSHEYYTTG DPTSFDHLARTFMDDATLTSKHVDTENE >gi|227862811|gb|ACKR01000043.1| GENE 4 2933 - 3355 427 140 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00421 NR:ns ## KEGG: LCRIS_00421 # Name: not_defined # Def: hydrocarbon binding protein, V4R domain # Organism: L.crispatus # Pathway: not_defined # 1 140 1 140 140 259 99.0 2e-68 MNKFMTENTENTNEHVYFINQLYRDFLLPTILGDDDASILYWAGKRIARKYDLSDYDDLV EFFNMAEFGKLEKVKERRSFTTYELSGQTVTDRLNSASKEFSLEGGMIAEAFQKSTGRTT ECEINILDKEKKVQFIARFG Prediction of potential genes in microbial genomes Time: Wed May 25 06:21:16 2011 Seq name: gi|227862787|gb|ACKR01000044.1| Lactobacillus crispatus JV-V01 contig00045, whole genome shotgun sequence Length of sequence - 27563 bp Number of predicted genes - 24, with homology - 23 Number of transcription units - 11, operones - 7 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 22 - 396 438 ## COG1970 Large-conductance mechanosensitive channel + Term 401 - 455 12.1 - Term 389 - 441 8.5 2 2 Op 1 3/0.000 - CDS 450 - 761 462 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 783 - 842 3.4 3 2 Op 2 . - CDS 844 - 3201 2673 ## COG1193 Mismatch repair ATPase (MutS family) - Term 3217 - 3252 3.3 4 3 Op 1 7/0.000 - CDS 3259 - 3570 334 ## COG3906 Uncharacterized protein conserved in bacteria 5 3 Op 2 6/0.000 - CDS 3572 - 4000 498 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 6 3 Op 3 4/0.000 - CDS 4000 - 4257 428 ## COG4472 Uncharacterized protein conserved in bacteria 7 3 Op 4 1/0.500 - CDS 4318 - 6957 3133 ## COG0013 Alanyl-tRNA synthetase - Prom 7134 - 7193 3.6 8 4 Op 1 . - CDS 7200 - 8561 1423 ## COG0513 Superfamily II DNA and RNA helicases 9 4 Op 2 . - CDS 8554 - 9525 686 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B 10 4 Op 3 . - CDS 9574 - 10632 853 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 11 4 Op 4 . - CDS 10685 - 12136 1673 ## COG0364 Glucose-6-phosphate 1-dehydrogenase - Prom 12167 - 12226 8.9 - Term 12195 - 12226 -0.8 12 5 Tu 1 1/0.500 - CDS 12240 - 12632 452 ## COG1862 Preprotein translocase subunit YajC 13 6 Op 1 29/0.000 - CDS 12692 - 13702 1008 ## COG2255 Holliday junction resolvasome, helicase subunit 14 6 Op 2 1/0.500 - CDS 13751 - 14338 662 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 15 6 Op 3 6/0.000 - CDS 14338 - 16263 1594 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 16 6 Op 4 . - CDS 16263 - 18860 2775 ## COG0249 Mismatch repair ATPase (MutS family) - Prom 18900 - 18959 6.5 - Term 19027 - 19060 -0.9 17 7 Op 1 41/0.000 - CDS 19098 - 20723 1560 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 18 7 Op 2 . - CDS 20777 - 21061 367 ## COG0234 Co-chaperonin GroES (HSP10) - Prom 21152 - 21211 7.8 19 8 Op 1 . - CDS 21243 - 21758 528 ## LCRIS_00402 hypothetical protein 20 8 Op 2 . - CDS 21804 - 22772 1151 ## LCRIS_00401 putative protein without homology - Prom 22803 - 22862 3.8 + Prom 22437 - 22496 5.5 21 9 Tu 1 . + CDS 22714 - 22944 98 ## - Term 22843 - 22883 5.9 22 10 Tu 1 . - CDS 22928 - 24877 2318 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 24968 - 25027 10.5 + Prom 24995 - 25054 11.1 23 11 Op 1 5/0.000 + CDS 25085 - 26542 1298 ## COG1621 Beta-fructosidases (levanase/invertase) 24 11 Op 2 . + CDS 26558 - 27544 632 ## COG1609 Transcriptional regulators Predicted protein(s) >gi|227862787|gb|ACKR01000044.1| GENE 1 22 - 396 438 124 aa, chain + ## HITS:1 COG:L153973 KEGG:ns NR:ns ## COG: L153973 COG1970 # Protein_GI_number: 15674083 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Lactococcus lactis # 1 119 1 122 122 124 58.0 4e-29 MIKEFKEFISRGNVMDMAVGVIIGAAFTAIVQSLVKNLINPLLGIFAGKIDFSNLVFKVG DATFKYGSFINSVINFLIISFVVFLMIKALNRVMPKKEKEAGPTEADYLEEIRDLLKKQV NQNK >gi|227862787|gb|ACKR01000044.1| GENE 2 450 - 761 462 103 aa, chain - ## HITS:1 COG:lin1196 KEGG:ns NR:ns ## COG: lin1196 COG0526 # Protein_GI_number: 16800265 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 1 101 1 102 103 120 50.0 6e-28 MVEAINDQNFEEETKNGVALVDFWATWCGPCKMQSPVIDQLSEERQDVNFYKMDVDQNQD TAKNLGIMAIPTLIVKKDGNIVDRITGYTPKEKLNQILDQYTD >gi|227862787|gb|ACKR01000044.1| GENE 3 844 - 3201 2673 785 aa, chain - ## HITS:1 COG:BH3106 KEGG:ns NR:ns ## COG: BH3106 COG1193 # Protein_GI_number: 15615668 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus halodurans # 3 785 2 785 785 595 44.0 1e-169 MNKKILEILEFGEITKRLSKLAITGPAKKEAEELLPSGDFEQVQNELKQTLALTNLLRIK GQLPLTDFQDVRPSTKRLSMKANLNAKELGNLLLVLSLAHEINDFLAEIDPNKLDLTAID AILDQLDVPDLLFRELKKSVDYDGEVLDTASHELARLRHDIRSNEEEIKNKMDAYTKGNS SKYLSEQIVTIRDDRYVIPVKQEYRAKFGGVVHDQSASGQTLFIEPKAVLNLNNRQQNLI AQEKQEVRNILKNLSNLAREEITSLNNIAAALTELDFLQAKAKLAKEMKASEPRLTQDHS LNLLKARHPLIDPEKVVPNDIRLGGEFDTMLITGPNTGGKTITLKTAGLLQLMAQSGLFI PAEEGSKVGVFKQVYADIGDEQSIEQSLSTFSSHINDIIAIMKNVDSETLVLIDEIGAGT DPEEGASLAISILDFLRKKDAKIMVTTHYPELKLYGYNRPRTTNASMEFDLKTLSPTYHL QIGIPGHSNAFAIARKLGMREDVVKNAQNLMSDEDSDINKMITKLNTQTKAATVARNRLQ TSLDRSQKLEQKLQQALDWYNQRVQKQLDFAQERANEVVAQRRKKADEIIAQLEKQKNMG VKENKIIEAKGELNSLERQANNLAHNKVLQREKRRHHVSVGDRVKVLSYGQTGTITKKLS EHEYEVQMGIIKVKVSDRDIERIEKGESTKPRQTVRATSAVRRSNAHSELDLRGQRYDEA MTNLDRYIDSVLLAGLDTVTIIHGIGTGAIRKGVWQYLRSSNHVKNFNYAPANEGGNGAT IVQLK >gi|227862787|gb|ACKR01000044.1| GENE 4 3259 - 3570 334 103 aa, chain - ## HITS:1 COG:BS_yrzB KEGG:ns NR:ns ## COG: BS_yrzB COG3906 # Protein_GI_number: 16079792 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 11 98 5 90 93 73 47.0 1e-13 MAAQVNGDDQDRQITLIDDQGNEELYEILFTFHSDDYDKSYVLLYPAAVGDDEDIEVQAF SYDADDAGDVTSSDLHEIESDDEWDMVQGVLNTFLDDDRLSGK >gi|227862787|gb|ACKR01000044.1| GENE 5 3572 - 4000 498 142 aa, chain - ## HITS:1 COG:SPy2113 KEGG:ns NR:ns ## COG: SPy2113 COG0816 # Protein_GI_number: 15675863 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Streptococcus pyogenes M1 GAS # 1 137 1 136 139 165 62.0 2e-41 MRLLGLDVGSKTVGVAISDELGITAQKLETIQIDESRYNFGMRPLKKLVRQYEVDGFVLG LPKNMDGTSGSSVARSKAYGKRLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK QVIDQMAAVLILQNYLDLHRKD >gi|227862787|gb|ACKR01000044.1| GENE 6 4000 - 4257 428 85 aa, chain - ## HITS:1 COG:BH1268 KEGG:ns NR:ns ## COG: BH1268 COG4472 # Protein_GI_number: 15613831 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 85 1 86 90 109 68.0 2e-24 MSSLDKTMHFDFNQNKGKNVYDTLQDVYNALEEKGYNPINQIVGYLLSGDPAYIPRHNDA RNLILKHERDEIIEELVKSYLGKNK >gi|227862787|gb|ACKR01000044.1| GENE 7 4318 - 6957 3133 879 aa, chain - ## HITS:1 COG:lin1539 KEGG:ns NR:ns ## COG: lin1539 COG0013 # Protein_GI_number: 16800607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Listeria innocua # 1 872 1 870 879 921 55.0 0 MKKLNSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN HRITSSQKSIRTNDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPDWLGL PKEKLYCTVYPKDEDSFNVWVKAGMPADHIVKLEDNFWDIGEGPCGPDTEIFYDRGQENN DVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERVLSILQD APTNFETDLFLPIIHTTEEMTPGKKYGENKEDTTAFKIIADHVRAISFAIADGALPSNSG RGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENVIQNEEE RFQSTLDTGLTLLDDLIDKAKKSKDKTISGKDAFKMFDTYGFPYELTFESAQDAGLKVDR KGFDAEMAAQKERARKARGDLQSMGRQDVTLMNIKDKSVFERDTYEEPHAKLVDIVVDDK LVDKADGEHATLVFDKTPFYAERGGQVADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVD LILPVEKGQEYVLKLDKERREGLRHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFD FTAMEPMTKRELKTVEELVNQKIWEAIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQ MGDFSSEFCGGTHVDNTNQIGIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDI QEEVKATKPDNIVDKIDSLESDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAA TADVNGMNDLRELADNWKSGNKSDVLVLAAENAGKANMIIALGQKALDKGLKAGNLIKIA APIFGGGGGGRPNMAQAGGKNPAGLNDAIKAVIDEISKN >gi|227862787|gb|ACKR01000044.1| GENE 8 7200 - 8561 1423 453 aa, chain - ## HITS:1 COG:L0340 KEGG:ns NR:ns ## COG: L0340 COG0513 # Protein_GI_number: 15672392 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Lactococcus lactis # 5 447 3 444 446 390 47.0 1e-108 MNNIFIDSRIKPAIQAGLKKIHFEKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVP IFNEIEEDKRYVQAIVTLPSRELADQLYQVARQLRDAAGMHFSIAHLAGGTDRERQLEKY QNNTPQLVIATPGRLLDFVQKKVFAVDQVKTFVIDEADMTLDMGFLNDIDQVAAKLPKDV QIAAFSATIPVKLSNFLRKYMAHPDEIVIDNPSVIAPTIKNDLLDIGSKDRKNVLYKLLT MGQPYLALVFANTKQKVDELTNYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQYVVA SDLAARGLDIDGVSLVVNYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRIEELE KMGVHFDFVEIKNGELVPRKHYRSRENRQSKNRKLDTKLVGYVKKEKRKRKPGYKKKIKR AIQEDNRQKRKLEQRHEVRKAKRLRKRKREQGL >gi|227862787|gb|ACKR01000044.1| GENE 9 8554 - 9525 686 323 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 12 316 7 310 311 268 46 2e-71 MRRLKISSFDDIYEKILQYPTIILHRHTSPDPDAIGSQAGLARALMEKFPDKRILCAGEN DEGDLAWINHMDQVKATDYEGALVITTDTANTPRISNKLYDKGDFLIKIDHHPDVDPYAD MSYVDPDAPAACQIIVDFLNEEGFKITKEVAYPLYAGIVGDTGRFMYPETSEHTFKVAAQ LASTGINITEIARNIADVTFDEAKLQALAMDKMEIDPVGAAFTILMQSDLKKLGLTDDQA NVAVSTPGRIKDVLAWNVFVEKPDGTFRVHYRSKGPVINELAAKHDGGGHALASGANAKD MDEVKQVFAEVVEVTKKFKEDHE >gi|227862787|gb|ACKR01000044.1| GENE 10 9574 - 10632 853 352 aa, chain - ## HITS:1 COG:SP0458 KEGG:ns NR:ns ## COG: SP0458 COG0389 # Protein_GI_number: 15900374 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Streptococcus pneumoniae TIGR4 # 1 340 10 344 344 271 44.0 2e-72 MDAFYASVEMQEHPEWKNKALIVGQDPRQNGGHGVVATCNYVARKYGVHSAMAAIQAVRL VPKELIVFTRPRFDKYRAVSAKIHSFMHDVTDQVESVALDEAYLDVTHPKIEQESAVQIA LDLQKRIRQEVGLNSSFGVSYNKFLAKMGSEYAKPFGRTVILPSEVQNFLAMQKIEKFPG IGPKTQEELHQIGVYTGADLEKVEVLTLIKKFKKMGYILAQHARGIDLRPVVTDSEANRK SIGMERTYEPAIYTEDEALTNIRNYCNHLEAALKKRNFKAGTVVIKVRNNNFDTVTKRKK LKTPSDSHLDFYDVARDLFEATSSFLDDGIRLLGVTVTDFEKKKYQSISLFD >gi|227862787|gb|ACKR01000044.1| GENE 11 10685 - 12136 1673 483 aa, chain - ## HITS:1 COG:SP1243 KEGG:ns NR:ns ## COG: SP1243 COG0364 # Protein_GI_number: 15901104 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 6 483 5 483 495 441 45.0 1e-123 MKNIPVVMILFGGSGDLAHRKLYPALFNLYEQGLIHDNFAVIGTARRPWSHEYLREQVSD AIHETHDTVDENELKAFASHFYYQSHDVTNVEHYEILKNLAQELDDRYSAQGNRLFYMAM APRFFGTIATHINDQDLTGSGFNRIVVEKPFGHDLASAEELNKQITASFDENDIFRIDHY LGKEMVQNIMPMRFTNPMVQNIWCSKYIKNIQVTLAERLGVEARGGYYDTSGALRDMVQN HIFQIITLLAMPEPKDLSSASVHQAKQDLLKSLIIPTPDDVKKYFVRGQYLGSDTTFAYK QEPNVDPESTTETFVAGKVKFNEGPIAGVPIYFRTGKEFKEKKNRIDIVLKHINNPYGQA HSNNITIVIDPTSEIYFTINGKRIDQPGIRRENLTYEFSKAEMAKVPDGYERLLHDVFVN DSTNFTHWSELKRYWEFIDAVEDAWQKENEAGNPAIAQYLPYRMGPKEANTIFESPTEHW IYE >gi|227862787|gb|ACKR01000044.1| GENE 12 12240 - 12632 452 130 aa, chain - ## HITS:1 COG:SP2029 KEGG:ns NR:ns ## COG: SP2029 COG1862 # Protein_GI_number: 15901850 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Streptococcus pneumoniae TIGR4 # 18 104 10 92 99 76 45.0 1e-14 MNILFLANAGAAASSNWMMIGLFIILIAFTYFGMIRPQKKQQQQRMQMMDKLKKGDEVIL VDGLHGKVDKINSDKTIVVDADGIYLTFERMAVRRVIPVAAPATPAAETKAEAPAEKPKE KADETKKEDK >gi|227862787|gb|ACKR01000044.1| GENE 13 12692 - 13702 1008 336 aa, chain - ## HITS:1 COG:SP0259 KEGG:ns NR:ns ## COG: SP0259 COG2255 # Protein_GI_number: 15900193 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Streptococcus pneumoniae TIGR4 # 15 329 12 326 332 399 64.0 1e-111 MAEDQVTSGDIENPEEQQMELSLRPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLL YGPPGLGKTTLAFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAK PVEEVLYSAMEDYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEH MQYYTIDELEQIVLRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEK TISLETTEGALKQLQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESL YEPYLLQHGFILLTPRGRMVTDKAYLQLGLPIPGDK >gi|227862787|gb|ACKR01000044.1| GENE 14 13751 - 14338 662 195 aa, chain - ## HITS:1 COG:lin1568 KEGG:ns NR:ns ## COG: lin1568 COG0632 # Protein_GI_number: 16800636 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Listeria innocua # 1 194 1 201 201 172 48.0 3e-43 MYEYFEGVITVVTPSYVVVDVGGVGYKVYSPTPFAYTQGQKAKVFIEQVVRDTGITLYGF QSQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKTASQ IVLDLKGKLGDYVARLDRPDNGENVPPALNDALLALIALGYTQKEVDRITPKLEKVAANT ADQYIKKGLALLLKK >gi|227862787|gb|ACKR01000044.1| GENE 15 14338 - 16263 1594 641 aa, chain - ## HITS:1 COG:SP0173 KEGG:ns NR:ns ## COG: SP0173 COG0323 # Protein_GI_number: 15900110 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Streptococcus pneumoniae TIGR4 # 1 639 1 635 649 456 40.0 1e-128 MSKIHELSETLTNQIAAGEVIERPASVVKELVENSLDAGATRIRVDFVDAGLKQIVVQDN GTGIARDQVDLAFTRHATSKIANEHDLFKVSTLGFRGEALASISAVSHVEILTATENAIG IRANYSGGNKKGQEDAAARKGTKITVKDLFFNTPARLKYLRSSRTEIMKIVDIINRLALG YPHVSFTLSNTGKILLRTPGNNNLKQTVANVYGRHIAEKMEKFEAKDSDFKITGLMSKPE LTRSTRNFISILLNGRYIKNFQLNTAILDGYGSKLAARHYPIIVLAIKVDPLLVDVNVHP TKQEVRLSKEKELGRLITSAISNTLVEKVGQISAFANLENKRDTLVDQLSFNLNQDVVNT ARKKEPEIREQEKPKFLTIESDDSEDNIQNEAVKQDSEKKYVDLNQPREDDQYIVTKTWK QNVALQQALTPFPTTRTNQEVISSGDETLANNLPRLVYVGQTDTYLFAQHNGDLFLIDQV AARRRLKFEQIFHMITAKKVVQQGLLTPIILEFGNLDFMQIKDQVEQIKQVGIYLEDFGQ NSFIVRSYPTWIHDNVEDSIRKILDGYLNVDKGKAKNLFSRIAAMQAKREITGKIKLSAA EAEQILLDLRKCTDPYHDADGRIILVRMSQNELRKMFKKDE >gi|227862787|gb|ACKR01000044.1| GENE 16 16263 - 18860 2775 865 aa, chain - ## HITS:1 COG:lin1440 KEGG:ns NR:ns ## COG: lin1440 COG0249 # Protein_GI_number: 16800508 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Listeria innocua # 1 861 1 859 860 820 50.0 0 MTEKTTPMMEQYYEIKKQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNRTKNP IPMAGVPHMAVDTYVNTLVEKGYKVALCEQLEDPKKAKGMVKRGIIQLVTPGTMMNEGPN DAKDSNYLTSVITTKSGFGLAYSDLSTGEIYATHLKSFDAVSNELLSLRTREVVYNGSLS EQNKDFMHKANITISRPTPIEGEHAEISYVEQNLTNGAEKEATRQLVGYLLSTQRRSLAH LQIAKSYEVNQYLQMSHTVQNNLELVASAKTGKKMGSLFWVLDKTHTAMGGRLLKQWLAR PLLNMDEINHREEMVQALLDGYFTRENAVDALKGVYDLERLTGRIAFGNVNARELLQLSR SLQAVPVILDALEQSDSDILVDFAKKIDPLKGVAEMITSTIVKDPPVLTTEGGLIQGGVD PQLDRYRDAMNNGKKWLAEMEADERQKTGIDNLKVGYNKVFGYYIQVSNGNKSKVPLDRY TRKQTLTNAERYITPELKEHENLILEAQTRSTDLEYDLFVKLREDVKKYIPALQKLGGQL AALDVYCGFATVAEQNNYCRPTFHADNQDINVTNGRHPVVEKVMTAGSYIPNDVKMDEGT NIYLITGPNMSGKSTYMRQMALIAIMAQVGSFVPADSADLPIFDQIFTRIGAADDLISGQ STFMVEMSEANEALQYATKRSLVLFDEIGRGTATYDGMALAGAIVKYLHDKVGAKALFAT HYHELTVMDETLDHLKNIHVGATEENGKLIFLHKILPGPADQSYGIHVAQLAGLPRNVLR EATKLLKRLEAQGSELAPVSQQLDLFAEPVENSVEETETQNDKPAITDAQQDILDDISNL YLADKTPLQVMQMVADWQKDLKDDD >gi|227862787|gb|ACKR01000044.1| GENE 17 19098 - 20723 1560 541 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 540 3 541 547 605 57 1e-172 MAKDIKFSENARRSLLKGVNKLADTVKTTIGPKGRNVVLEQSYGNPDITNDGVTIAKSIE LKDHYENMGAKLVAEAAQKTNDIAGDGTTTATVLTQAITNEGMKNVTAGANPVGIRRGIE KATEAAVNELHKISHKVESRDQIANVAAVSSSSKEVGNLIADAMEKVGHDGVITIEDSRG INTELSVVEGMQFDRGYLSQYMVTDNDKMEADLDNPYILITDKKISNIQDILPLLQEIVQ QGKSLLIIADDVTGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAQLQDIAALTGGTVIT DDLGLELKDTKIDQLGQARRVTVTKDSTTIVDGAGSKDAIQEREDSIRKQIEESTSDFDK KKLQERLAKLTGGVAVIHVGAATETELKERRYRIEDALNSTRAAVDEGYVAGGGTALVDV EKAINDLKADTADENTGIQIVLRALSAPVRQIAENAGKNGEVVLNHLLKQENEIGYNAAT DTWENMVDAGIIDPTKVTRTALQNAASIAALLLTTEAVVAEIPEEKPANPAPQAGAPGMG M >gi|227862787|gb|ACKR01000044.1| GENE 18 20777 - 21061 367 94 aa, chain - ## HITS:1 COG:lin2175 KEGG:ns NR:ns ## COG: lin2175 COG0234 # Protein_GI_number: 16801240 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Listeria innocua # 1 94 1 94 94 94 55.0 4e-20 MLQPIGDRVIVKVKKEEEETVGGIVLASNAKKKPTEGEVVAVGEGAYASNGEKIPMAVKK GDVVLYDKYSGTDVEYEGEKYLVLHEKDILAIAK >gi|227862787|gb|ACKR01000044.1| GENE 19 21243 - 21758 528 171 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00402 NR:ns ## KEGG: LCRIS_00402 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 171 1 171 171 259 100.0 2e-68 MKKNSTLKHVWIMTAVYWVVGILSIFWGKLDHTFASQLKEINNIYVLVLIIILSLPLLLS LLLSVKVKMPRLICNPLVAVIYLLVVIAAGVAYNLQNIIGYFFPIILFIIMALVAVFYAL VKTFSSRKSGKYFFIDGKDKKECHDFWDAYKKYYVMGLTYGIIDGLITVIS >gi|227862787|gb|ACKR01000044.1| GENE 20 21804 - 22772 1151 322 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00401 NR:ns ## KEGG: LCRIS_00401 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 322 1 322 322 614 99.0 1e-174 MKLKSGVIGVLVTGLTVFSINLTSSKIKAAITVPNPKTDYVVKTTSNVYKSNGKRTSFKT RGQIQTGNVPVIESQLYEGKFINVQGTKTINGTAYYKIGPNAYIKQNNVLNYAQEKAKLE AYQAQDDVNDDSDQSTELSSDDVNFDIAWYDNINEDPSPAMFDDSGYHNRVIKNARKLLG YFTYGTGAYRTNFGSWRHPNKNGSTDCSGFVWIVMKRAGYRVGNAPFFTLPMERDAKSTH GYLKKISAKNIRPGDIVIVNTGNGVGQNGHAAIVDGKYDGWDTQIIEEGGNLGVDDVHRS SLGSSLSDKLAKGRITYARPVK >gi|227862787|gb|ACKR01000044.1| GENE 21 22714 - 22944 98 76 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLKTVNPVTNTPITPLFNFIKHTLTLFFFIENILLKLKIEVQHLVLKNAKKQSFLASFIL IVLIFSRGVEETNCVQ >gi|227862787|gb|ACKR01000044.1| GENE 22 22928 - 24877 2318 649 aa, chain - ## HITS:1 COG:SA2167_2 KEGG:ns NR:ns ## COG: SA2167_2 COG1263 # Protein_GI_number: 15927957 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Staphylococcus aureus N315 # 97 468 1 385 385 343 48.0 4e-94 MDHRKVAERVIKDVGRDNIIAGAHCATRLRLVLKDDSKVDQKALDNDPDVKGTFKTNGQY QVIIGPGDVNDVYDEFIKITGLKELSTDDLKKVAAEGKKKNPVMDFIKLLSDIFVPIIPA LVAGGLLMALNNFLTSPGLFGPKSVVQMVPNVAGISSMIQVMSAAPFIFMPILVGMSAAK RFGANQFLGATIGMIMTTPGLLGANHFWDIFGLHVAQTNYQYQVIPVLVAVWVLSILEKY FHKHLPSAVDFTFTPLLSIMITGFLTFTIIGPVFKGVSDGITNAIVWLYDTTGAFGMGVF GLTYSAIVTTGLHQSFPAVETQLLAAFAKNPASSGDFIFVTACMANVAQGAATFAVYFLT KNKKMKGLASSSGVSALLGITEPALFGVNLKYKFPFFCALIGSGVAAAFAGLMHVTAAAL GSAGFLGFLSIYPKTIPMWVVSVLISFAVAFILTYVYGKGHLKEEVAEQDVPVNDATDYA EETQKAEKLGKEQMALKDEVIASPVDGTPESLTKVNDQVFSAKLMGDGAAVIPSDGTIYS PVTGTVTIAYETKHAYGIKSDDGAEVLIHIGLDTVNLKGEHFESFVKQGQRVNKGDKLGT VDLDAVKKAGYDTTVMVVITNTANYANVSRITDAGDKHGDKLIAVTAHN >gi|227862787|gb|ACKR01000044.1| GENE 23 25085 - 26542 1298 485 aa, chain + ## HITS:1 COG:SP1724 KEGG:ns NR:ns ## COG: SP1724 COG1621 # Protein_GI_number: 15901557 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Streptococcus pneumoniae TIGR4 # 1 461 1 460 484 454 48.0 1e-127 MEWTREKRYLPYQDWDADTLMHLQAQAANSPYQMRYHLHPISGLINDPNGFSYFDGAYHL FYQSYPFGAVHGLKSWWHFKSTDMVHWENLGLGIEPDTMADSHGAYSGSAREIDGKLFIM YTGNHRDENWVRTPYQIGAWMDKNNKVSDKTILFKNPDHITEHFRDPQIIKENDTYYAIL GAQDKKEKHGHIDVWKSQDLKNWEELGFLDFTNEDMGYMIECPNIVRVDGKVVVIFCPQG LDKKVAAYDDIYPNMYVIADDIDWENHKLINPGKLHNLDHGFDVYATQAFNAPDGNAYEV SWVGLPDTTYPTDDENWANCLSQVKELHLKSDKLIQTPVKAISSIRKNEASISNQVVSDQ AGQQFELELTIKANQSGTLHLAANNDLSNSLQLNFDTKNGKLVLDRAHAGQKVAVDYGES RAITLSPNHDLKLDIFVDHSLIEVFVNDGEKVLTGRYFADQTNKKIAFAQDIDYTGKLWQ MQTIL >gi|227862787|gb|ACKR01000044.1| GENE 24 26558 - 27544 632 328 aa, chain + ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 326 1 320 321 310 50.0 3e-84 MAAKLSDVAKKAGCSVTTVSRVINNHGYLSQKTKDKVFAAMRELNYRPNSIARSLQGKKM KLVGLIFPEITNPFFAELVQDIETTLFQQNYKVILCNAGQNKEKEREYLRMLQANQVDGI IAGAHNLGINEYQQLGLPIVSFDRKLSDNVPIVSCDNYQGIKLAVHDLVQAGCHKIYFLG NEHRKGNPTDERLAAYLDEAKECHFSAHIRSVAFSDSSNIKNMKIHDMLVNDQPDGVVCT DDLTAVLVLQEAKKLGIKVPKELKVIGFDGTKQIQTYHSELSTIAQPIHDIATLLVKLLL TRISNPDEKLRQKNYILPVKLIKSETTA Prediction of potential genes in microbial genomes Time: Wed May 25 06:21:36 2011 Seq name: gi|227862765|gb|ACKR01000045.1| Lactobacillus crispatus JV-V01 contig00046, whole genome shotgun sequence Length of sequence - 17784 bp Number of predicted genes - 22, with homology - 22 Number of transcription units - 7, operones - 3 average op.length - 6.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 9 - 644 590 ## COG2344 AT-rich DNA-binding protein - Prom 689 - 748 5.4 + Prom 586 - 645 7.0 2 2 Tu 1 . + CDS 819 - 2741 1695 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 2744 - 2797 11.1 + Prom 2752 - 2811 7.0 3 3 Tu 1 . + CDS 2914 - 4623 2042 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] + Term 4715 - 4748 -0.9 + Prom 4830 - 4889 3.2 4 4 Op 1 2/0.500 + CDS 4964 - 5947 1173 ## COG1804 Predicted acyl-CoA transferases/carnitine dehydratase + Term 5969 - 5999 1.2 5 4 Op 2 . + CDS 6019 - 6336 366 ## COG1804 Predicted acyl-CoA transferases/carnitine dehydratase + Term 6533 - 6572 1.0 - Term 6317 - 6354 1.1 6 5 Op 1 9/0.000 - CDS 6378 - 7424 642 ## PROTEIN SUPPORTED gi|227425790|ref|ZP_03908856.1| SSU ribosomal protein S18P alanine acetyltransferase 7 5 Op 2 20/0.000 - CDS 7421 - 7993 1007 ## PROTEIN SUPPORTED gi|227877624|ref|ZP_03995677.1| ribosomal protein ala-acetyltransferase 8 5 Op 3 . - CDS 7977 - 8711 571 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 9 5 Op 4 . - CDS 8741 - 9259 457 ## LCRIS_00388 hypothetical protein 10 5 Op 5 . - CDS 9309 - 10043 705 ## COG3884 Acyl-ACP thioesterase 11 5 Op 6 2/0.500 - CDS 10046 - 10897 715 ## COG0313 Predicted methyltransferases 12 5 Op 7 1/0.500 - CDS 10897 - 11199 197 ## COG4467 Uncharacterized protein conserved in bacteria 13 5 Op 8 2/0.500 - CDS 11257 - 12114 660 ## COG0470 ATPase involved in DNA replication 14 5 Op 9 4/0.500 - CDS 12114 - 12434 398 ## COG3870 Uncharacterized protein conserved in bacteria 15 5 Op 10 . - CDS 12447 - 13085 623 ## COG0125 Thymidylate kinase - Prom 13117 - 13176 15.2 - Term 13154 - 13182 -0.9 16 6 Op 1 . - CDS 13188 - 13427 268 ## LCRIS_00381 hypothetical protein 17 6 Op 2 23/0.000 - CDS 13427 - 14026 483 ## COG0353 Recombinational DNA repair protein (RecF pathway) 18 6 Op 3 . - CDS 14027 - 14362 569 ## COG0718 Uncharacterized protein conserved in bacteria 19 6 Op 4 5/0.000 - CDS 14378 - 14608 235 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 20 6 Op 5 . - CDS 14617 - 15207 394 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 21 6 Op 6 2/0.500 - CDS 15214 - 17019 1654 ## COG2812 DNA polymerase III, gamma/tau subunits - Prom 17071 - 17130 5.1 - Term 17032 - 17070 8.6 22 7 Tu 1 . - CDS 17225 - 17725 385 ## COG0590 Cytosine/adenosine deaminases Predicted protein(s) >gi|227862765|gb|ACKR01000045.1| GENE 1 9 - 644 590 211 aa, chain - ## HITS:1 COG:BS_ydiH KEGG:ns NR:ns ## COG: BS_ydiH COG2344 # Protein_GI_number: 16077664 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Bacillus subtilis # 2 205 4 205 215 258 61.0 5e-69 MEKIKIPKATAKRLPLYYRYLIILNEEGKDKVSSTELSEAVQVDSASIRRDFSYFGALGK RGYGYDVKNLLSFFKKILNQDTLTNVALIGVGNLGRALLNYNFKRSNNIRISCAFDINKE ITGRILSGVPVYDMDDLKQQLSDQQITIAILTVPSTAAQKTTDEMVDAGVKGIMNFTPIR LSAPADVRVQNVDLATELQTLIYFLDSDKEN >gi|227862765|gb|ACKR01000045.1| GENE 2 819 - 2741 1695 640 aa, chain + ## HITS:1 COG:SPy1025 KEGG:ns NR:ns ## COG: SPy1025 COG0488 # Protein_GI_number: 15675024 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Streptococcus pyogenes M1 GAS # 1 638 1 635 635 536 46.0 1e-152 MIIAQGHDLEQQFGANTLFKNVNFSIDSNARIGLVGPNGVGKTTLLKIMTGEQEPTHGEF TVNKGIDVGYIAQENALDENKTIWDEMETVFAPLIRERKSLVQLQEKIADHPEDQELLKQ YDQKQFNFEQKGGYTYQSDIKSILNGFKFPEDTWQKKIGSLSGGEKTRLAFVKLLLRKPA LLLLDEPTNYLDLDTLDWLEGFLKNYSGAILVVSHDQYFLDHLAAQIFELEFGKLTAFKG NYSAYVMQREQRDKDQEAAYEKQQAEIKKDEEFIQKNLVRATTTKRAQSRRKKLEKIERI TPPKHKNKVRIHFSSDHPSGKEVLIFNDLTIGYPDKTMVKDISFQINKGDRVAIIGPNGI GKSTLLKTIMKQLTPKSGSIKYGASLEIGYYDQELQGLDSSKTVLDTVWDRHKTMPERDV RSILASFLFTAKDIDKTVGQLSGGQKARLTLTVLSLEHDNFLLMDEPTNHLDIEAKEVLE KALKDFDGTLLFVSHDRYFINQLANKIVLVRDGHAKVYDGNYSYYLDEKAKQAAMAENSA AEPEVEPSKQISQQKLSYQEQKQRDSQKRKLQRAIDNAEKQIEQLEEREQEIQTEMANPE IASSFDKLGPLQEQLSDVQQKLDEANSAWEKAIEEMDNFE >gi|227862765|gb|ACKR01000045.1| GENE 3 2914 - 4623 2042 569 aa, chain + ## HITS:1 COG:MT0126 KEGG:ns NR:ns ## COG: MT0126 COG0028 # Protein_GI_number: 15839499 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Mycobacterium tuberculosis CDC1551 # 9 556 15 569 582 560 54.0 1e-159 MTQNVSLTGAALLIDALQANGLNNMYGVVGIPVTDFARLAELKGMKFYEFRREDAAVDAA AAAGFLTDKPGVALTVSAPGFLNGLTALAEATKNCFPMIMISGSSDRHIIDLDRGDYEGL DQYNVAKPLCKAAYRVDRAEDMGLAVARAVRTAMSGRPGGGYLDLPAATVADTVAQKSDA HIYEVVDPAPKQLPLDDAIERAVELLKNAKHPAIILGKGSAYARSEAEVRELVTKTGIPF LPMSMAKGVVPDDSPSSAASARSFTLGQADVVLLIGARLNWMLSNGEAPLFNEDAKFVQV DIDATEFDSNRKIDAPLQGDITSVLQKLNAALEKADVKAPQDWLDSIKNACEANNEKFAK RIAASEAKPTLGFYSAIEPINDLMQKHPDTYIVSEGANTLDIGRNLIGMQKPRHRLDTGT WGVMGVGLGYAIAAAVETGKKVISLHGDSAFGFDGMEVETICRYHLPVTVVIINNGGIYN GDRNPVKDQLGPTVLSHNAHYAEIAKAFGGDSYRVSNYAEMKDALEKAYESGNPSIIDAQ IPESMGKESGHIGNLNPELDLAQLEDKDN >gi|227862765|gb|ACKR01000045.1| GENE 4 4964 - 5947 1173 327 aa, chain + ## HITS:1 COG:yfdW KEGG:ns NR:ns ## COG: yfdW COG1804 # Protein_GI_number: 16130306 # Func_class: C Energy production and conversion # Function: Predicted acyl-CoA transferases/carnitine dehydratase # Organism: Escherichia coli K12 # 9 310 117 416 416 233 47.0 4e-61 MGKASRFEPKIDLCIIEGLNEDSRFENVKAFEPVAQSAGGAASATGWNEGKANVPTQSAA TLGDSNPGMHLTIGILAALLQREHTSEGTFVYQSMQDAVLNLCRIKLRNQIMLDNLGALP HYAVYPNWKWGKAIPRAENTEGGQVIGRTYKAKGWETNPNAYVYIVIQNSDKSWAAIANT MGHPEWITNPRFDGWHNRQLHKEEIYPLIESYTKQYDKYELTKKLGAACIPVGPVLDWHE IENGPDLNKDGTIVTIDQGGNRGKFKTIGLPFSLSNYKRAPDLGENNKEILASLGYDPDQ IEKLTEEGVISKAQGPKNPRTEVIKGE >gi|227862765|gb|ACKR01000045.1| GENE 5 6019 - 6336 366 105 aa, chain + ## HITS:1 COG:yfdE KEGG:ns NR:ns ## COG: yfdE COG1804 # Protein_GI_number: 16130303 # Func_class: C Energy production and conversion # Function: Predicted acyl-CoA transferases/carnitine dehydratase # Organism: Escherichia coli K12 # 23 100 22 99 394 82 53.0 1e-16 MTEPNYAELEAKNSHLDKNKPYPLSGMLVIDFTHVLSGPTCTRMLADSGARVIHIERKTG DDTRHMGPYIADGSSEYFRICNAGKESIALDLKDPKDHALVEKNT >gi|227862765|gb|ACKR01000045.1| GENE 6 6378 - 7424 642 348 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227425790|ref|ZP_03908856.1| SSU ribosomal protein S18P alanine acetyltransferase [Atopobium parvulum DSM 20469] # 1 340 473 817 832 251 41 2e-66 MSEKNVRILAYESSCDETSTAVIKNGREIESLIVATQIKSHQRFGGVVPEVASRHHIEVV SQITKEALAEANCTWKDIDAIAVTYGPGLVGALLIGVSAAKAASMATGIPLIGVDHIMGH IMAAQLKDEIEYPALALQVSGGHTEIVLLKDPVHFEIIGDTRDDAAGEAYDKIGRVLGVN YPAGKTIDAWAHEGKDTFNFPRAMMEDDDYDFSFSGLKSAFINTCHHADQIHEKLNKYDL AASFQAAVIDVLAHKTIRAIKQYKPKTFIMGGGVAANHGLRDRMSAEIAKLPKADQPKVI LPDIKLCGDNAAMIGAAAYNLYNNGQFADLTLNADPSLELPYAKSMLN >gi|227862765|gb|ACKR01000045.1| GENE 7 7421 - 7993 1007 190 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227877624|ref|ZP_03995677.1| ribosomal protein ala-acetyltransferase [Lactobacillus crispatus JV-V01] # 1 190 1 190 190 392 100 1e-109 MLKKFNQFFHQQLNRIDMSFTPFIANVNGKRLQIMQATDDNIPDLPVLEEQVYSGRTPWN KFSFERELEKRHNCLYLVVYYESMLVAFIGARFTPEETHITNIAVAPAFQNMHIGRYLMQ LIIDRARENDSDCVSLEVRVDNEIAQKLYRSLGFEGTFIRKNYYHDTHTDAMNMVLWLKP HQIKRKKFTF >gi|227862765|gb|ACKR01000045.1| GENE 8 7977 - 8711 571 244 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 42 234 1 191 380 224 57 1e-116 MKILSVSTATNHLSVALNDGQQIIVEKNERDERNHSEHLDPLIDEILKDNDLSLKDIDRF AVAIGPGSYTGLRIGITTVKMFASILDKEVVGISTLQALAKGVQEDALVITGLDARNDNY FAAGYLSGAVPENVIPDGHYNIDVLIKAIQDYAAKHEVKKIVFVGSGLEKQDEKFKALNI PYVYGTEEENVIHAGLIGQLAENAVPVDPDKLLPRYLRRTQAEVDWHKKTGKPFEPDSHY VEEV >gi|227862765|gb|ACKR01000045.1| GENE 9 8741 - 9259 457 172 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00388 NR:ns ## KEGG: LCRIS_00388 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 172 1 172 172 280 98.0 1e-74 MNTKKILRTDLQQLVFLGIVVAMKIILSQFSFGPVMVKVGLGFIGSVLLGYLFGPLWGTI GGGISDLISSALFGDQGGFFIGFTLTAMAGPFIYALFLYNKPVKIWRIIASTILVTVIVN IGMNTLWLHIMYGINFNAALIQRLPKEMIVPWIQMVISYFVLQAVSRVKIKK >gi|227862765|gb|ACKR01000045.1| GENE 10 9309 - 10043 705 244 aa, chain - ## HITS:1 COG:SP1408 KEGG:ns NR:ns ## COG: SP1408 COG3884 # Protein_GI_number: 15901262 # Func_class: I Lipid transport and metabolism # Function: Acyl-ACP thioesterase # Organism: Streptococcus pneumoniae TIGR4 # 1 244 3 242 245 114 28.0 1e-25 MKYTEEYQIEFKDCDENRRLKLPALVDLMMQVSEHQLSQGGAGTDDLVKRGLGWVVTQYH FEIKDLPKPGDQVILSTEASGYNRFFEYRDFGVSTQDGKPLVTVKSQWVMLDLKKRHMVP ADTKMMEDWGAPLLKKMPRFPRLRPQTEYEQKRSYRARYDDLDTNHHVTNSHYFSWFVDM LDRNFLKEHIVTAIDIKFDKEVHYGESINSCMDLVQYDIIITSHAIEAEDGTVKAVCELS WREI >gi|227862765|gb|ACKR01000045.1| GENE 11 10046 - 10897 715 283 aa, chain - ## HITS:1 COG:lin0210 KEGG:ns NR:ns ## COG: lin0210 COG0313 # Protein_GI_number: 16799287 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Listeria innocua # 1 282 2 291 293 244 45.0 1e-64 MKRQSSYAKDEGKLYLVPTPIGNLEDITIRAKKVLTDADYVAAEDTRTSGILLEKIGVHN KMISFHKYNSKERAPELIKLMKEGAVIAEISDAGMPVISDPGYVLVQECIKHDIPVVPLP GPNAFSTALIASGFNQPFTYYGFLPRKSSEQKTYFAQMRDNRATSIFYEAPHRLAKNLKT LASVLPKDRQIVAARELTKIHEEFIRGSVEEVTNYFNENAPRGEFVILVSPNTEAPKQLS WTELIDLVNDLVEKGESKKDAIKQVAKQHHVSKNELYDQYHQD >gi|227862765|gb|ACKR01000045.1| GENE 12 10897 - 11199 197 100 aa, chain - ## HITS:1 COG:SP0937 KEGG:ns NR:ns ## COG: SP0937 COG4467 # Protein_GI_number: 15900817 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 5 86 24 102 105 60 34.0 6e-10 MTKTIASLENDILETLKENTELKVENQLLHEKLDKLTANQPAPETKTQSGLESLKKIYDS GYHICNMYYGSHRDPSADCMFCLDILDNFGEKKGKKKDGR >gi|227862765|gb|ACKR01000045.1| GENE 13 11257 - 12114 660 285 aa, chain - ## HITS:1 COG:SP0936 KEGG:ns NR:ns ## COG: SP0936 COG0470 # Protein_GI_number: 15900816 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Streptococcus pneumoniae TIGR4 # 13 283 16 294 296 111 31.0 2e-24 MIDLSNVGKKQTQFLKIAYDQKKLAHSYLFVDSDEARALNTAYWLACLFNCTGENKPDGS CQNCRQILSGNHPDVLLVAPDGKQTLGIDQIRPLKEELAKSPVESTRRFFFINEAQKLTL AAANGLLNLLEEPVAPVVTILITNNSDQILPTVRSRTQIINFDNGERASGRTAVLLENGF SKAEIEELGNLDKWNQAIKYFYQEMLEHNSLALVSAHKLAADAKLVSEQRYILLQLKLLA EQDLRNPAKRIMAATMLKNLIEIDKMRLSNVNLQNALDYLALKWK >gi|227862765|gb|ACKR01000045.1| GENE 14 12114 - 12434 398 106 aa, chain - ## HITS:1 COG:lin2840 KEGG:ns NR:ns ## COG: lin2840 COG3870 # Protein_GI_number: 16801900 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 106 1 109 109 111 52.0 4e-25 MKLVIAIVQKEDSNDLQRAFVQNDFRATKLATSGGFLSQGNTTFLVGCDDDKVDDVLKII KEQSRAREEIATPHMVSTGYEITQPLKVTVGGATYFVVPVDEFKRF >gi|227862765|gb|ACKR01000045.1| GENE 15 12447 - 13085 623 212 aa, chain - ## HITS:1 COG:L3846 KEGG:ns NR:ns ## COG: L3846 COG0125 # Protein_GI_number: 15672380 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Lactococcus lactis # 1 212 1 211 211 206 50.0 3e-53 MRGYFVSFEGPDGAGKSTVLKEVLNQIGSELETQYLVTREPGGSKIAEKIRDIILDPAND KMDNKTEALLYAASRSQHVEEIIRPALKEGKVVFSDRYVDSSLAYQGAGRDLGIQEVKQI NDFATDKLDPDLTFFLDLAPEVGLKRIEKLRPGQEDRLEQENLAFHKKVYAGFLKVKEMY PERFVTVDATQPIDQVVAQVIAILKQRMPELF >gi|227862765|gb|ACKR01000045.1| GENE 16 13188 - 13427 268 79 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00381 NR:ns ## KEGG: LCRIS_00381 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 79 1 79 79 124 100.0 1e-27 MANKKQAKIKAMGDQKLVAEIEKLQNQIALEQDLDQTTLDLSEDNYVQNRILKAKYTFLY NEARHRGTRFSGITNAITQ >gi|227862765|gb|ACKR01000045.1| GENE 17 13427 - 14026 483 199 aa, chain - ## HITS:1 COG:L0265 KEGG:ns NR:ns ## COG: L0265 COG0353 # Protein_GI_number: 15672322 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 1 196 1 195 198 261 63.0 4e-70 MQYPLPIAHLIDAYMKLPGIGEKTATRLAFYTMDMPDQDVDDFAKSLVQVKKDIHQCPIC GNITEKDVCDICSNPNRDQTTIMVVEQPKDLMAFEEMGEYDGLYHVLHGVLSPMDGIGPE EINIKSLITRLQKNDAVKEVILALNSTPEGESTAMYISKLIKSAGIKVTRLAAGLSVGSD IEYANSITLKRAVQGRTAL >gi|227862765|gb|ACKR01000045.1| GENE 18 14027 - 14362 569 111 aa, chain - ## HITS:1 COG:L122849 KEGG:ns NR:ns ## COG: L122849 COG0718 # Protein_GI_number: 15672102 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 15 110 2 97 99 93 57.0 1e-19 MSRRPNFGGMGMGGMNMQQMMKQAKKLQAQMAEEQENITAQEFTGKSADDLVVATFTGDR KLKDIKIDKEAIDPDDPDMLQDLVIDAVNKGLAKIDEATQASLGKYTKGLM >gi|227862765|gb|ACKR01000045.1| GENE 19 14378 - 14608 235 76 aa, chain - ## HITS:1 COG:SP1767 KEGG:ns NR:ns ## COG: SP1767 COG1442 # Protein_GI_number: 15901598 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 1 75 740 812 814 82 54.0 3e-16 MLGPTAKVIVADLIAQLNNQMIDIGHIDSEYEWMKMGVTNKVKIPHKHTAEFNFDDKQVK LEKDDNFDKQIISIIE >gi|227862765|gb|ACKR01000045.1| GENE 20 14617 - 15207 394 196 aa, chain - ## HITS:1 COG:SP1767 KEGG:ns NR:ns ## COG: SP1767 COG1442 # Protein_GI_number: 15901598 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 7 162 548 701 814 117 42.0 2e-26 MSNDYNIKVLNKETTLQILLEDHNSLIRFGDGELDLIRGASIPYQDYQPELAGSLKELLL EGSNRRLLVGLSDVFEKLDRYNDYCRNFYQNSFFPNNHDLLREVELQYNVYVSTFFSRPY IDLVDKSHAKDYFAKMKQLWQDHDLLIVEGKYSRSGEGMTCFLMLDQLVDSFVRQLMHIV AKKLLKMKLLKMQLIG >gi|227862765|gb|ACKR01000045.1| GENE 21 15214 - 17019 1654 601 aa, chain - ## HITS:1 COG:lin2852 KEGG:ns NR:ns ## COG: lin2852 COG2812 # Protein_GI_number: 16801912 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Listeria innocua # 1 601 1 579 579 434 42.0 1e-121 MAYQALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAK ALNCTNLQDGEPCNECANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKY KVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISK EDLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYDDALQI TGFADRENIEKILLALLNQDAGQALQFTQDELAKGASSKNILDEIIDLTTKSLLIVKTDE NKQETFLTKDFIEKIKSVSTDSYYRLINLANNALNDLRYTNQQQIPLEVFLVEASSTAPV QISAAPAKTTPAQPAQGNTDLQAELAALKKQVVDLTQKLSEVSNKPSLSTNQVFHLDTAV PKVAPKPAVKPKEKQTKKPVRKVKKTTAENRKQVYHVLENATRNDLETIKNVWPDLQSVL AVSEKALLDVLEPVAASPEQVVMKCKYTLWFENASADNDLLGRLTDYIEKFAKHSYGIVL VPDNDWLAVRKEFVESHKDELLAKKKQQIEIQEEKSDEPEVDPEVINKAKDLFGDAVNIK D >gi|227862765|gb|ACKR01000045.1| GENE 22 17225 - 17725 385 166 aa, chain - ## HITS:1 COG:BH0033 KEGG:ns NR:ns ## COG: BH0033 COG0590 # Protein_GI_number: 15612596 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Bacillus halodurans # 5 157 3 154 159 169 52.0 2e-42 MLSSEDKRKYMQLAIDQAKEAEKQGEVPIGAVVVDPDGRVVGTGYNRRELDEDATQHAEM IAIKEACSKLGMWRLIDCSLFVTLEPCPMCAGAIINSRIKDVYFGALDPKAGACGSVVDL FSVEKFNHHPHAIRGLYRDQCAQMLKDFFRAIREKQKAAKLAQKEV Prediction of potential genes in microbial genomes Time: Wed May 25 06:21:46 2011 Seq name: gi|227862764|gb|ACKR01000046.1| Lactobacillus crispatus JV-V01 contig00047, whole genome shotgun sequence Length of sequence - 2051 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + SSU_RRNA 394 - 1948 99.0 # AB008206 [D:1..1556] # 16S ribosomal RNA # Lactobacillus crispatus # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Prediction of potential genes in microbial genomes Time: Wed May 25 06:21:48 2011 Seq name: gi|227862763|gb|ACKR01000047.1| Lactobacillus crispatus JV-V01 contig00048, whole genome shotgun sequence Length of sequence - 3195 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + LSU_RRNA 35 - 3089 96.0 # CP000517 [D:78167..81218] # 23S ribosomal RNA # Lactobacillus helveticus DPC 4571 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. + 5S_RRNA 3090 - 3190 97.0 # CR954253 [D:694129..694245] # 5S ribosomal RNA # Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Prediction of potential genes in microbial genomes Time: Wed May 25 06:21:48 2011 Seq name: gi|227862762|gb|ACKR01000048.1| Lactobacillus crispatus JV-V01 contig00049, whole genome shotgun sequence Length of sequence - 249 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 27 - 101 90.5 # Ile GAT 0 0 + TRNA 158 - 230 82.3 # Ala TGC 0 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:21:49 2011 Seq name: gi|227862760|gb|ACKR01000049.1| Lactobacillus crispatus JV-V01 contig00050, whole genome shotgun sequence Length of sequence - 245 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:21:49 2011 Seq name: gi|227862758|gb|ACKR01000050.1| Lactobacillus crispatus JV-V01 contig00051, whole genome shotgun sequence Length of sequence - 930 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 740 646 ## COG3201 Nicotinamide mononucleotide transporter + Term 771 - 811 2.6 Predicted protein(s) >gi|227862758|gb|ACKR01000050.1| GENE 1 3 - 740 646 245 aa, chain + ## HITS:1 COG:L100822 KEGG:ns NR:ns ## COG: L100822 COG3201 # Protein_GI_number: 15672860 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinamide mononucleotide transporter # Organism: Lactococcus lactis # 5 232 2 230 243 109 31.0 6e-24 ERKHENYFVWLFNQLKGWPVQNYCLWFFAFGFQLALLIQGKITSVTLITFIGTLLGTLCV LAINATKAINGWLGLISAACFIYAGWSAKNYLSIFEQIAYIATLDLPVIIAVRSWNDDTK NHLRKFGSKEWLVAIVGTLLVYVVSGFLIGKFTNDPRPWIDAISFAISLTAGIMCFMRYN NQYFWWTASGVFQLILLGVTYAQGDANLAMAINSLIYVINDVLAFTVSPWFNMGRRKAGL KEIQK Prediction of potential genes in microbial genomes Time: Wed May 25 06:21:55 2011 Seq name: gi|227862742|gb|ACKR01000051.1| Lactobacillus crispatus JV-V01 contig00052, whole genome shotgun sequence Length of sequence - 17266 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 4, operones - 4 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 52 - 411 265 ## LCRIS_01678 hypothetical protein 2 1 Op 2 . + CDS 411 - 1058 661 ## COG2323 Predicted membrane protein 3 1 Op 3 . + CDS 1060 - 1881 656 ## COG0846 NAD-dependent protein deacetylases, SIR2 family 4 1 Op 4 . + CDS 1897 - 2853 992 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) 5 1 Op 5 . + CDS 2863 - 3717 924 ## LCRIS_01674 DNA-entry nuclease 6 1 Op 6 . + CDS 3774 - 5201 1419 ## COG4690 Dipeptidase + Term 5210 - 5240 1.2 + Prom 5353 - 5412 7.1 7 2 Op 1 10/0.000 + CDS 5457 - 6545 1252 ## COG3839 ABC-type sugar transport systems, ATPase components 8 2 Op 2 38/0.000 + CDS 6545 - 7411 890 ## COG1175 ABC-type sugar transport systems, permease components 9 2 Op 3 . + CDS 7415 - 8239 669 ## COG0395 ABC-type sugar transport system, permease component 10 2 Op 4 . + CDS 8223 - 9518 1625 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 11 2 Op 5 . + CDS 9572 - 10873 1746 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 10899 - 10932 2.2 + Prom 10903 - 10962 4.2 12 3 Op 1 . + CDS 10992 - 11909 598 ## COG0598 Mg2+ and Co2+ transporters 13 3 Op 2 . + CDS 11925 - 12869 956 ## LCRIS_01666 beta-lactamase + Term 12876 - 12913 2.4 + Prom 12881 - 12940 9.9 14 4 Op 1 . + CDS 13002 - 13577 560 ## LCRIS_01665 transcriptional regulator 15 4 Op 2 . + CDS 13582 - 17262 3783 ## COG2409 Predicted drug exporters of the RND superfamily Predicted protein(s) >gi|227862742|gb|ACKR01000051.1| GENE 1 52 - 411 265 119 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01678 NR:ns ## KEGG: LCRIS_01678 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 119 31 149 149 172 99.0 5e-42 MIIFALLYLHNRFATKYRDLGIIALLFLLLFAGTQYEKYVQLNTQKSQAIQIVPFIKSIA KDENVSTSDVLVSSTVLTNGMIVRIDSKNIDYQLNLNDDRNTYTLTQAHVIDHKVEVIK >gi|227862742|gb|ACKR01000051.1| GENE 2 411 - 1058 661 215 aa, chain + ## HITS:1 COG:L163025 KEGG:ns NR:ns ## COG: L163025 COG2323 # Protein_GI_number: 15674091 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 212 1 211 211 263 62.0 3e-70 MQLDYTQLFIKFALGILTLIIQINVFGKSNLAPTTALDQLQNYVLGGIIGGLIYNPSITI LQFFLVLIVWTLVVFILKFSRDHNNWIRGIIDGKPVQVIKNGKVLVGNCMKAGISANELM FKLRSRGIYSVEKIKNCIFEQNGQLTIIENDEANIRFPIISDGQANIDVLELIHKSEAWL QQQVEEAGYNSISDVFLGEYINGQLRLTGYSKGKR >gi|227862742|gb|ACKR01000051.1| GENE 3 1060 - 1881 656 273 aa, chain + ## HITS:1 COG:MYPU_4420 KEGG:ns NR:ns ## COG: MYPU_4420 COG0846 # Protein_GI_number: 15828913 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Mycoplasma pulmonis # 11 258 18 269 282 104 27.0 2e-22 MADLVTAKKWLKNANTVIVTAGNGMAKEEGLDILSEEGFDDQFGKIADKYDVHTIGDALD KRFDTWSEQWAFGSELINEYSLQYEPSETMLALKKLIRDKKYFIATSTFGHFFENAGFNE NRIFNAFGDWTKMQCSSGINHGQKDNREVVERFMTAIKNGNVTADLVPKCEDCNSPMELH MPLNANFFPDTDANTRFRWFLTGAEDKNVVILELGVDETSPQLLDPMVKLVQQFPNWHYI AADLADADLPADLKKRAMGFDSNSHEMLMNLIK >gi|227862742|gb|ACKR01000051.1| GENE 4 1897 - 2853 992 318 aa, chain + ## HITS:1 COG:lin1357 KEGG:ns NR:ns ## COG: lin1357 COG2176 # Protein_GI_number: 16800425 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Listeria innocua # 33 180 428 571 1444 98 36.0 2e-20 MSIYIKNGILHVTGAQDKLRKKGQEKPDFLTNYTMLDIETTGLYPYRDRITELGGVKVRN GQIVDQYTNLVKFSKNNSVPAFITKLNGITEAQIVKEGIPAEQAIREFREFIGDDVIIGY NVNFDLNFLYDLSQKYGLPVLDNDYVDVLRLARTYYPRERHNRLLDCMQRAGIAQVEAHH GLQDSLDTIKVYDDFAQRFTDDLLEKAQSKIKNIDLTTGELDYVDLGWHNPVQNKNIVLS GNIHMNEAEAGKMINNMGGQVDNSVLATTNYLIMGDQDFFRKDNQDLNAARDLIKNGAKI KRFSETFFLSMLDDWARS >gi|227862742|gb|ACKR01000051.1| GENE 5 2863 - 3717 924 284 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01674 NR:ns ## KEGG: LCRIS_01674 # Name: not_defined # Def: DNA-entry nuclease # Organism: L.crispatus # Pathway: not_defined # 1 284 1 284 284 501 100.0 1e-141 MTRRRRKKQGTVVSSLIVLIAILWGVFTKAGSDPNGSQFLRDFTGNNDEHVTNTISDASK AKTNYGGLSPTDYQKLANLNFKSGSRAYTEVNHDKSTLVKGAWKINRVIYSNLDSLNRTS RSNTAFLEKRNVANDSLRVRQYVEPTGWHYNHRNGTQIYNRGHLIAYSVSAGIDQSGNYD PRNQSGDQNNPKNLFTQSAYSNQKIQTIFEAKVRRALRQNKRVIYQATAVFRGNELMARG VNLQAVSTDGSLNFNVYLYNVQPGYVFNYNNGRAKVDRQMQVNE >gi|227862742|gb|ACKR01000051.1| GENE 6 3774 - 5201 1419 475 aa, chain + ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 2 473 7 474 474 363 42.0 1e-100 MKKDNCTAMLVGKDASIDGSTMIARDEDGYGGINEKVFVVNPARHYDEDYVSKYNGFKMH LEGDGCKWTAVPTADDSEGRWDEQGINEYNVAMSATETEATNARCLGHDPLVANGINEDS MVYITLPFVKTAREGVKRLGQLIEKYGTGESNGIAFSDNKEVWYLETGAGHQWVAARVPD DSYAICPNIMVIQNVDFDDPDNFMYSAGIREFVEKNHLNNSTDGSFSFRDIFGTKDEADA FYNTPRTWYGQKLFNPSIEQDPTSQEMPFTRVPENKIGVEDVQRFLTSHYNGTPYDPMDT FSSGSEKEQKMFRSIALDRNQESSILQIRNDVPAKMAAIQWINMGFYAYSPYVPFYTNIE DTPLNYKVADHMVDPDSSAYWLYKTLQVLVEPRYHQYIYEVNAYRDDCQSYGIGRIDLID EKAKNMEGRELIKYLTSANDETAGVITKKTKNLMSKLVRQALNSSKYQFERGDNL >gi|227862742|gb|ACKR01000051.1| GENE 7 5457 - 6545 1252 362 aa, chain + ## HITS:1 COG:mlr7224 KEGG:ns NR:ns ## COG: mlr7224 COG3839 # Protein_GI_number: 13476018 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Mesorhizobium loti # 7 328 4 330 381 265 42.0 1e-70 MNDEKFVEVKNLKKVYDNGHEAIKDVSFSVKKGDLVCLLGPSGCGKTTILNMLAGLLNPT SGDILFDGKSVVNVAPKDRQIGYVFQNYALYPHMTVLQNVMFPLTVGKQKMPKDEARKIA EKYMATTQITELADQKPGNLSGGQQQRVAIARALVQQPKILLMDEPLSNLDARLRLKIRE EIRALVKSVGITTLFVTHDQEEALSIGDKIILFNNGVIQQDDLGQNFYLEPNNYFVANFV GNPVIDNFNVKVNGGKITGSDFEINVDDLDKDRFKRDLTDGEYVLSVRPENILPVEEDGA VSAKVDDIELIGRERILKFTHDGVQARSLVNLETPIKPGNNINLKMRLDRVFLFTKEGER VY >gi|227862742|gb|ACKR01000051.1| GENE 8 6545 - 7411 890 288 aa, chain + ## HITS:1 COG:TM0596 KEGG:ns NR:ns ## COG: TM0596 COG1175 # Protein_GI_number: 15643362 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Thermotoga maritima # 60 284 189 414 420 156 38.0 4e-38 MKSNQKKAWLFLAPTIIFVTFFSIYPILRAFVMSFQSGSLINLNWSGFSNYQYIFSDPEF WRAIKNTILYALISVPVALAISIMLAWFIFSRIKHKSFFETTFFMPYVTSTIAIGIVFRY IFNGDYGLLNFLLKAVHLPTPNWIDDPAMSLTTIIIFGVWTSLAFNIVILMGALRNIDPN YYTIADMYGATGTEKFWRITMPQLVPTIAFLLTMNIIAAFKIYTSVYALFNGQAGVGNSA TTAVFYIYNKFQIVGTPGVAMAATVVLFIIIMFVTFLQRKMMKKIGGQ >gi|227862742|gb|ACKR01000051.1| GENE 9 7415 - 8239 669 274 aa, chain + ## HITS:1 COG:TM0598 KEGG:ns NR:ns ## COG: TM0598 COG0395 # Protein_GI_number: 15643364 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Thermotoga maritima # 54 273 58 277 277 169 39.0 5e-42 MKKIRWGTLIAYIILAIFAIITVFPFIYMILGGLMSFRETTTIPPTIIPKHFEWSNYAKV FAQAPFARYFLNTFITASVTTIVSLFNALLGAFAMVNLKFKGKGVVQMVLLSLLMVPGEA IIFTNYNTIARMGLLNTYIGLVLPFLTSIFYMYYLQSYFGSISQTIYKAAMIDGASDWEY IWKILVPMSKGGLFTVALLSFISGWNSFLWPLLVTNEDSMRLLNNGLTSFASDAGSETQL QLAAATLTVLPILILYFIFRKQIIRGVVRNDLKG >gi|227862742|gb|ACKR01000051.1| GENE 10 8223 - 9518 1625 431 aa, chain + ## HITS:1 COG:PH0466 KEGG:ns NR:ns ## COG: PH0466 COG0595 # Protein_GI_number: 14590378 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Pyrococcus horikoshii # 9 428 4 511 514 103 25.0 5e-22 MTLKDKTTVTFYNGLTTIGGPMIEVAYNKSHVLFDLGEVYRPELKLPDESYQTLIKNKLI GDVPNFYDPKLTGKPIDTDRWEHAAAYISHLHLDHSKAMNFLAPEIPLYAGPITAHLLPA LNEKGDFLLPAAGHDRTYTRPIIAAEYKKPIKVGDIILEIYPSDHDAYGATGLLVKTPDK QIAYTGDIRLHGYHPDWVRDFMQAAKNSDMLIIEGTGVSWPEEKHDENSEEFTGPKNEVE LTEEIVRLQKANPERQITFNTYPTNVERLLRIIADSPRKVVLHAQRAHLIKESLDEDYPY YYMPNEEHYADLKPELEVSYDELLADNHKYMWQVVTDYDKLQKGGLYIHSNAEPLGDFDP AYKPFVEALANNDIEYKALRCSGHADEKELKEIIAGVQPAVLVPVHTLHPELEENPYGER ILPKRGQTITL >gi|227862742|gb|ACKR01000051.1| GENE 11 9572 - 10873 1746 433 aa, chain + ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 44 433 19 415 419 172 30.0 1e-42 MKFSKKLTMAAVATLALVGTAACSKSGNSSSSSSEKIPSKITKKTTVVFWNAMPGVQGST LKQLTNEFEKKNPKITVKLENQGAYNDLQAKINSTLQSPNNLPTITQAYPGWLWNAAQNK MLVNMTPYINNKNVGWGSAKASDIRTELLDGAKIKGTQYGIPFNKSIETLTYNKTMFKKY GIKKVPTTMEELKDVSETIYKKSNHKVVGAGFDSLSNYYTLGMKDEGVNFTDKINFSGST SKKVLNFYADGIKKGYFRVAGSEHYLSGPFANEKVAMFVGTSAGEGFVKQGVGNKFTYDV APRPGKYTMQQGTDIYMFNHASAEQKAAAFKYIKFLVSKSSQIKWANATGYIPVNNSAIE SSEYKNNKSIKLPAKLEDAMKNLYSVPVAKNSNAAYNQLNSILQNIFAAAQKGQNTNSQI NTGKQKFDAAWKQ >gi|227862742|gb|ACKR01000051.1| GENE 12 10992 - 11909 598 305 aa, chain + ## HITS:1 COG:lin0568 KEGG:ns NR:ns ## COG: lin0568 COG0598 # Protein_GI_number: 16799643 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Listeria innocua # 13 301 12 298 301 140 33.0 2e-33 MIRQQNFPVRTKYKWYDINNLSEEDSERLQQDFNFTPDIISYISDRHERPHYDYDVHTKS HLLVYDVPIWPTNTIKHFTSHPITFLVVGENIFTFHTESTSYVFDEFNDEHMRERLSEAK DVTELLMLFFLYSSQYFQRAVTQLDVERNSLDQKLSDDINNKDLVELSNIEKSLVYLSSS IQTDLIMLHGLNHSKLDFTKEASERLDDVLIESSQSAEMVQISQQVTKTLSATSNNMMNN NLNDTMQFLTVWSLVLTIPTILTGFYGMNVSLPILKNSFDWVLIIILMVVLMVWLVILMK RHHFF >gi|227862742|gb|ACKR01000051.1| GENE 13 11925 - 12869 956 314 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01666 NR:ns ## KEGG: LCRIS_01666 # Name: penP # Def: beta-lactamase # Organism: L.crispatus # Pathway: not_defined # 1 314 1 314 314 496 98.0 1e-139 MKHKILIGSLIVTLFAFILYTSNIKRVENAQLKIVEPNNSKVAKNKKKTKEPKVKKLEKP KEPKVNSIEYSNHVKAQKGSNQKLVKQIKKVMGIDDSFQVVAQDLTNSSHFAVVSNTNKA HDAGKTMRLFLLIALYEQEQKGKMGSRTAIKISKKDKAKGDKMFQIGITYGVSYLRSAML KGNKTATSALTRKIGVNNIDQVAKKMGATQTKVNSNMTGQTTANDLAKTMIGLYQGRILN RQYASRVLATLAKERPSLVSGLSGGIYAIGDDDFAVAIVQTNGRAYCMSVWSTQHKNFNK LGKTVNAWFIKKHK >gi|227862742|gb|ACKR01000051.1| GENE 14 13002 - 13577 560 191 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01665 NR:ns ## KEGG: LCRIS_01665 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 191 1 191 191 350 98.0 1e-95 MAQKRNLDLDKIIDQATELISKKGLTATTLPALAKALDVRSQSLYHYVSGRKQLLSLVGA RRIKILRHELMNDLIGMSGRDALLKFADVVRDFLLSDPALSSILYHLNEYPKDAAINQEI LDLIKMGERFNFKKESVISFHALIGAVLGYVFLDKSKSFGDETEDESNRNYHEMILRLVE PVPDLQQIGRK >gi|227862742|gb|ACKR01000051.1| GENE 15 13582 - 17262 3783 1226 aa, chain + ## HITS:1 COG:lin1189 KEGG:ns NR:ns ## COG: lin1189 COG2409 # Protein_GI_number: 16800258 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Listeria innocua # 12 748 12 768 1066 355 30.0 3e-97 MQKFLKNHVFELIAWILILIISVVALPNITQLTNDHSNITLPSNVQSNVAQSIENNWGSK KKNTYAVALVFNKKSGKLTDADKQAINNTLDKFTNDKSKYGIKDSLLPDSNIATRKKLQS KDGTTWVAQFNVAKSHGTIEKVYNEMNKAAKTQGLRTYVTGADVLQHAFSASIQEGIKKT EAITVVFIFIVLVIVFKSPIVPLISLLTVGVSFLTSFSIVTNLVKSANFPFSNFTQVFMV IVLFGIGTDYNILLYDKFKENLGKGMDKYKAMHDALRNAGKTILYSGSSILIGFTALSLA KFSVYQSAVGVAVGVAVLLVVLLTLNPFFMATLGKKMFWPVKKFTGESDDKLWHGISSAT LKHPIIYLVVLAVVVVPFMLMYSGHLNYDDTDEIADSVPSKQGLLIVQKHFSKGMAEPSY LYIQSKHRLDNEENLKLIDQVTKQLQASKDVSFATSVTEPYGEPIDMLYVNNQLNTVNDG VDQARSGLGKLSKGSNKVANGANSLKDGADQLQNGTSRLQSGASQLVSGTNRLQNGASQL QSGATRLQSGSGQLVSGADRLRSGAGQLQSGAVRLQTGAGRLESGTHALQSGATSLVSGA NRLKNGANSLQSGTQQMVNQLQQLSSQLSTQLSGSNKQQLAQLQTALPQINSGIQQLNQQ VSGLDISGLTSQLSGLSDKISAAESSAKDQAAGAVKQASSAAGDAAIAALEKSGVKIDSS QAAAAKAAANAVGDQASGQVKNSSSSAAGNIDTNSLSSMTSQVSQLKQAVAQLAQASNKA LPGAATALNQLSSGLTQVQSAASQGVAGAQKLNNGAGQLSNGLGSLSSGASRLGAGVNQV NNGAGRLNNGLGTLASGAGTLNNGLGTLANGAGTLNNGLGTLATGAGQLNSGIGQLAGQA PQLISGISQLNTGAGQLSAGAGKLASKVPQLTSGIDTVNSGLGQGETYLRGLGSSAAADT FYIPKEFLKNDMFKKSMDVYLSPDKKSAQIIVVFDSNPSATEATKKSQELSAMAKKSFQG TALKNAKVAMGGQSSKIEDTKTVASGDFLRTAAIMLIGIGIALMFVTRSLLQPIYILGTL LIAYLCSLSINQWIVKAVLGKSMLTWNTPFFSFIMLIALGVDYSIFLMTRYRELESEGYT TPSSRILKACAIIGTVVISAAIILGGTFAALIPSGIPTLIEVALAVDIGLLILVFILPIT MSAATKLTYEGIDLNKFAKRRNKKNN Prediction of potential genes in microbial genomes Time: Wed May 25 06:22:08 2011 Seq name: gi|227862740|gb|ACKR01000052.1| Lactobacillus crispatus JV-V01 contig00053, whole genome shotgun sequence Length of sequence - 872 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 763 633 ## LGG_01153 transposase IS4 family protein Predicted protein(s) >gi|227862740|gb|ACKR01000052.1| GENE 1 2 - 763 633 253 aa, chain + ## HITS:1 COG:no KEGG:LGG_01153 NR:ns ## KEGG: LGG_01153 # Name: is38 # Def: transposase IS4 family protein # Organism: L.rhamnosus # Pathway: not_defined # 55 244 1 189 374 208 53.0 1e-52 IGLAKLTKQVNFKRKSTVSLTMIISWLMSVHFARLSLFRAKDDKRFSVRTARNVLNDGRI NWQKLLCLIAARLIGCLKPFIDKRRRLAFIVDDTLMARSFSKKTELLAKVYDHDKHEYLN GYRGLTLGWSDGNTFLPVNFALMSTKTKKNMIGAAPITADERSISGKRRNQAQRKMNDVT VELIRQALRLGVEAKYVLFDSWFSSPRMFWILKKIGLDGLGMIKKSSKIYYIYRHRRYSV KDLYDRFGCFKHP Prediction of potential genes in microbial genomes Time: Wed May 25 06:22:12 2011 Seq name: gi|227862739|gb|ACKR01000053.1| Lactobacillus crispatus JV-V01 contig00054, whole genome shotgun sequence Length of sequence - 253 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:22:12 2011 Seq name: gi|227862737|gb|ACKR01000054.1| Lactobacillus crispatus JV-V01 contig00055, whole genome shotgun sequence Length of sequence - 439 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 378 417 ## COG0846 NAD-dependent protein deacetylases, SIR2 family Predicted protein(s) >gi|227862737|gb|ACKR01000054.1| GENE 1 3 - 378 417 125 aa, chain - ## HITS:1 COG:lin2882 KEGG:ns NR:ns ## COG: lin2882 COG0846 # Protein_GI_number: 16801942 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Listeria innocua # 4 125 1 122 229 134 55.0 5e-32 MMDLAELQTDINNAQHIVFLTGAGVSTHSGIPDYRSKNGIYDGVQESPETILSDSTLFNR PEFFHEFVMNNMYFPTAKPNLIHEKIAHFCNEKGNLITQNIDTLDTKAGNQHVTEFHGNL YNIYC Prediction of potential genes in microbial genomes Time: Wed May 25 06:22:13 2011 Seq name: gi|227862734|gb|ACKR01000055.1| Lactobacillus crispatus JV-V01 contig00057, whole genome shotgun sequence Length of sequence - 690 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 65 - 484 358 ## COG3328 Transposase and inactivated derivatives Predicted protein(s) >gi|227862734|gb|ACKR01000055.1| GENE 1 65 - 484 358 139 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 2 139 85 222 391 143 47.0 9e-35 MFHQHTLPDYKQHSNVLESMIIKLYSKGVTTREIADLIEKMYGSHYSPAQVSNISKQMIP KVEAYHQRKLSDKFFCVYLDATYIPLRRETFEREAVYIAIGIKPNGHKEVIDYRIAPSEN VENWTEMFQDMKSRGLEQV Prediction of potential genes in microbial genomes Time: Wed May 25 06:22:14 2011 Seq name: gi|227862733|gb|ACKR01000056.1| Lactobacillus crispatus JV-V01 contig00058, whole genome shotgun sequence Length of sequence - 280 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 9 - 99 57.5 # Ser GGA 0 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:22:14 2011 Seq name: gi|227862731|gb|ACKR01000057.1| Lactobacillus crispatus JV-V01 contig00059, whole genome shotgun sequence Length of sequence - 360 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 258 235 ## gi|293382095|ref|ZP_06628042.1| transposase, IS4 family - Prom 293 - 352 1.9 Predicted protein(s) >gi|227862731|gb|ACKR01000057.1| GENE 1 3 - 258 235 85 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293382095|ref|ZP_06628042.1| ## NR: gi|293382095|ref|ZP_06628042.1| transposase, IS4 family [Lactobacillus crispatus 214-1] # 1 85 1 85 456 170 100.0 3e-41 MKALHRNILDRLDQIINDTGKHIHDFIDDPHAFTRKRFLDAATVIKTTINMQGKDLTSEL FRAFGQKAIKNNDKVVSTSAYVQRK Prediction of potential genes in microbial genomes Time: Wed May 25 06:22:19 2011 Seq name: gi|227862729|gb|ACKR01000058.1| Lactobacillus crispatus JV-V01 contig00060, whole genome shotgun sequence Length of sequence - 349 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 348 351 ## LGAS_0410 adhesion exoprotein Predicted protein(s) >gi|227862729|gb|ACKR01000058.1| GENE 1 3 - 348 351 115 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0410 NR:ns ## KEGG: LGAS_0410 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 1 115 1646 1761 2457 124 68.0 1e-27 ITYTPTEQTGKITYVDPNGKEVGTTPLTGKTDEEIPVTPNVPAGWQIVPDPKIPTKITAT PDGIQTVTVKVEHKIITVTPTDPKTPSDKLPDNPGKNYPKGVDKKDLNKTVKRTI Prediction of potential genes in microbial genomes Time: Wed May 25 06:22:22 2011 Seq name: gi|227862728|gb|ACKR01000059.1| Lactobacillus crispatus JV-V01 contig00061, whole genome shotgun sequence Length of sequence - 282 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:22:23 2011 Seq name: gi|227862725|gb|ACKR01000060.1| Lactobacillus crispatus JV-V01 contig00062, whole genome shotgun sequence Length of sequence - 1750 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 192 - 252 7.3 1 1 Op 1 3/0.000 - CDS 284 - 1033 679 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 1136 - 1195 3.5 2 1 Op 2 . - CDS 1274 - 1750 312 ## COG0747 ABC-type dipeptide transport system, periplasmic component Predicted protein(s) >gi|227862725|gb|ACKR01000060.1| GENE 1 284 - 1033 679 249 aa, chain - ## HITS:1 COG:BH3636 KEGG:ns NR:ns ## COG: BH3636 COG0747 # Protein_GI_number: 15616198 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Bacillus halodurans # 2 233 355 588 610 167 35.0 2e-41 MNPNSKMNSKSLRQAIAYAMNINQVEKRYTQGLTFRVPTLIPEQFGDYFDKNSKGYPYNL KKASELLDKAGYKKKGKWRVQPNGKPLSIHLAAMSGSAVQEPIIQNYIQQWRKIGLHVSL TGNRLMEFNSFYDKLDQDDKNIDMFIASWSLSSEPSPRGIYSETSAMNDSRFVTKENNKL LNEIDSSKAFNHAYRVKAFHKWQQYMNDEAYIVPMTNSYSIKAVNSKLVNYSLKPAESNS IWYKVGFAK >gi|227862725|gb|ACKR01000060.1| GENE 2 1274 - 1750 312 158 aa, chain - ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 5 157 105 257 600 166 54.0 2e-41 DQINNKGPATFKLDKNAKTITITVKKGVKWSDGKQVVAKDLEYPYEMTANKATNSLRYSD SLENIVGMKAYHNGKAKTISGIQFPNGENGRTIVIHFLSMKPGMLQSGNDYFIETAAPYH YLKNIPFSKLVSSDQIRKNPIFFGPYKVSKVVRGQSVT Prediction of potential genes in microbial genomes Time: Wed May 25 06:22:24 2011 Seq name: gi|227862723|gb|ACKR01000061.1| Lactobacillus crispatus JV-V01 contig00063, whole genome shotgun sequence Length of sequence - 791 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 286 334 ## LBA1400 oligopeptide ABC transporter substrate binding protein - Prom 321 - 380 4.9 Predicted protein(s) >gi|227862723|gb|ACKR01000061.1| GENE 1 1 - 286 334 95 aa, chain - ## HITS:1 COG:no KEGG:LBA1400 NR:ns ## KEGG: LBA1400 # Name: oppA # Def: oligopeptide ABC transporter substrate binding protein # Organism: L.acidophilus # Pathway: ABC transporters [PATH:lac02010] # 1 95 1 95 581 150 78.0 1e-35 MKSIKLFGSTGLLIGAALTLVACGQSNTNAAKSAKKFPEQTVQKTAQKGGTLNYAIETDT PFKGIFDSQLSVDQVDSDVMQFGNEGLFDTDNSYQ Prediction of potential genes in microbial genomes Time: Wed May 25 06:22:39 2011 Seq name: gi|227862669|gb|ACKR01000062.1| Lactobacillus crispatus JV-V01 contig00064, whole genome shotgun sequence Length of sequence - 45127 bp Number of predicted genes - 49, with homology - 49 Number of transcription units - 22, operones - 11 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 145 - 546 261 ## LGAS_0706 redox protein, regulator of disulfide bond formation - Prom 585 - 644 3.0 - Term 654 - 691 6.4 2 2 Tu 1 . - CDS 708 - 1436 506 ## COG1072 Panthothenate kinase - Prom 1457 - 1516 3.4 3 3 Op 1 . - CDS 1626 - 2240 446 ## LCRIS_01982 membrane protein 4 3 Op 2 . - CDS 2237 - 2740 307 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 5 3 Op 3 . - CDS 2760 - 3674 426 ## PROTEIN SUPPORTED gi|145636669|ref|ZP_01792336.1| 50S ribosomal protein L4 6 3 Op 4 . - CDS 3707 - 4696 1301 ## COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase - Prom 4732 - 4791 4.6 7 3 Op 5 . - CDS 4793 - 5281 676 ## COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase - Prom 5458 - 5517 9.1 - Term 5549 - 5586 -0.2 8 4 Op 1 . - CDS 5587 - 6525 1251 ## COG2070 Dioxygenases related to 2-nitropropane dioxygenase 9 4 Op 2 . - CDS 6572 - 7366 1083 ## COG1024 Enoyl-CoA hydratase/carnithine racemase - Prom 7438 - 7497 10.8 + Prom 7588 - 7647 6.9 10 5 Op 1 . + CDS 7734 - 8489 948 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 11 5 Op 2 . + CDS 8561 - 9358 558 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Term 9382 - 9421 4.3 - Term 9370 - 9409 0.5 12 6 Tu 1 . - CDS 9433 - 10584 1083 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase - Prom 10620 - 10679 5.3 - Term 10622 - 10667 10.1 13 7 Op 1 . - CDS 10708 - 11400 873 ## COG3010 Putative N-acetylmannosamine-6-phosphate epimerase 14 7 Op 2 . - CDS 11423 - 11695 277 ## COG3458 Acetyl esterase (deacetylase) 15 7 Op 3 . - CDS 11695 - 12426 555 ## COG3458 Acetyl esterase (deacetylase) 16 7 Op 4 . - CDS 12447 - 13943 1725 ## COG0591 Na+/proline symporter 17 7 Op 5 . - CDS 13963 - 15126 842 ## COG0475 Kef-type K+ transport systems, membrane components 18 7 Op 6 . - CDS 15136 - 15873 773 ## lp_3566 hypothetical protein - Prom 15912 - 15971 6.4 19 8 Tu 1 . - CDS 16024 - 16887 283 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 - Prom 17125 - 17184 10.6 + Prom 16897 - 16956 8.1 20 9 Op 1 3/0.000 + CDS 17167 - 18039 1206 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase + Term 18081 - 18121 7.2 + Prom 18065 - 18124 2.4 21 9 Op 2 . + CDS 18144 - 18983 483 ## COG1737 Transcriptional regulators + Term 19119 - 19161 5.5 - Term 19216 - 19266 3.6 22 10 Tu 1 . - CDS 19274 - 20908 1362 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 20931 - 20990 1.6 - Term 21597 - 21640 3.0 23 11 Tu 1 . - CDS 21662 - 22735 849 ## LAF_1481 hypothetical protein - Prom 22803 - 22862 5.3 - Term 22822 - 22860 6.3 24 12 Op 1 . - CDS 22916 - 23191 201 ## LBA1450 hypothetical protein 25 12 Op 2 . - CDS 23201 - 23419 235 ## gi|227877709|ref|ZP_03995745.1| hypothetical protein HMPREF0506_0746 26 12 Op 3 . - CDS 23467 - 23802 432 ## COG4226 Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters 27 12 Op 4 . - CDS 23802 - 24047 173 ## gi|227877711|ref|ZP_03995747.1| hypothetical protein HMPREF0506_0748 - Prom 24079 - 24138 10.5 - Term 24348 - 24382 4.5 28 13 Tu 1 . - CDS 24405 - 25394 985 ## LCRIS_01449 hypothetical protein - Prom 25435 - 25494 11.0 29 14 Tu 1 . - CDS 25539 - 26411 693 ## LCRIS_01450 ABC transporter - Term 26679 - 26725 8.8 30 15 Tu 1 . - CDS 26743 - 28080 1699 ## COG0174 Glutamine synthetase - Prom 28100 - 28159 6.3 - Term 28156 - 28198 6.5 31 16 Op 1 . - CDS 28216 - 29466 1459 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance 32 16 Op 2 . - CDS 29459 - 30379 822 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase - Term 30397 - 30454 7.0 33 17 Op 1 1/0.333 - CDS 30457 - 30858 528 ## COG0607 Rhodanese-related sulfurtransferase 34 17 Op 2 3/0.000 - CDS 30917 - 31156 251 ## COG4483 Uncharacterized protein conserved in bacteria 35 17 Op 3 4/0.000 - CDS 31156 - 31842 721 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 36 17 Op 4 3/0.000 - CDS 31877 - 32440 609 ## COG0212 5-formyltetrahydrofolate cyclo-ligase - Term 32450 - 32486 4.2 37 17 Op 5 1/0.333 - CDS 32495 - 32644 263 ## PROTEIN SUPPORTED gi|58337773|ref|YP_194358.1| 50S ribosomal protein L33 38 17 Op 6 . - CDS 32720 - 34828 2305 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 - Prom 34850 - 34909 7.4 + Prom 34837 - 34896 7.2 39 18 Op 1 . + CDS 34916 - 37555 1422 ## COG4485 Predicted membrane protein 40 18 Op 2 . + CDS 37618 - 38541 1302 ## COG2971 Predicted N-acetylglucosamine kinase + Term 38569 - 38617 10.2 + Prom 38660 - 38719 5.1 41 19 Op 1 . + CDS 38809 - 39057 213 ## LCRIS_01462 addiction module antitoxin, RelB/DinJ family 42 19 Op 2 . + CDS 39060 - 39353 322 ## LCRIS_01463 putative protein without homology + Term 39391 - 39441 9.9 + Prom 40013 - 40072 7.6 43 20 Tu 1 . + CDS 40101 - 40385 181 ## PROTEIN SUPPORTED gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 + Term 40406 - 40439 4.5 44 21 Op 1 35/0.000 - CDS 40430 - 41203 283 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 45 21 Op 2 33/0.000 - CDS 41196 - 42122 830 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 46 21 Op 3 . - CDS 42128 - 43009 879 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 47 21 Op 4 . - CDS 43006 - 43725 712 ## LCRIS_01468 putative protein without homology 48 21 Op 5 . - CDS 43725 - 44294 332 ## LCRIS_01469 putative protein without homology - Prom 44357 - 44416 3.6 - Term 44378 - 44421 -0.9 49 22 Tu 1 . - CDS 44440 - 45033 747 ## LCRIS_01470 putative protein without homology - Prom 45066 - 45125 5.5 Predicted protein(s) >gi|227862669|gb|ACKR01000062.1| GENE 1 145 - 546 261 133 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0706 NR:ns ## KEGG: LGAS_0706 # Name: not_defined # Def: redox protein, regulator of disulfide bond formation # Organism: L.gasseri # Pathway: not_defined # 1 131 1 133 136 134 51.0 9e-31 MTKYVVNSELSDTEWQIENSTARYRFIADNGDKTGGPDPVEYLTGALNSCMSISAGLLIK AHHLDVQNFKINAEANTERLSHGMPDVDTITIKISFDSPMSHEDQDKFVKDILRVSTVYQ TLKKAIKISIEWN >gi|227862669|gb|ACKR01000062.1| GENE 2 708 - 1436 506 242 aa, chain - ## HITS:1 COG:SP0839 KEGG:ns NR:ns ## COG: SP0839 COG1072 # Protein_GI_number: 15900726 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Streptococcus pneumoniae TIGR4 # 9 241 75 306 306 212 41.0 5e-55 MFSKLKTNYIKSADLNQPFILGITGSVAAGKSTTAKVIETLISQFYSDLDVQSLTTDGFI YPNKVLEQKNLMSRKGFPESYNVSLLNDFLSQVSDGVEEVSYPVYSHELSDIVPGKYRSI TNPDILILEGIDILQIPENEEKIISDYIDLSIYIDASENLLEEWFLTRFKCLLDINKDNP NNFFYHWAHIPLDESIDYAKKVWRTVNLVNLRDYIVPTKERANIILYKDVGHRVTSIKIR KY >gi|227862669|gb|ACKR01000062.1| GENE 3 1626 - 2240 446 204 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01982 NR:ns ## KEGG: LCRIS_01982 # Name: not_defined # Def: membrane protein # Organism: L.crispatus # Pathway: not_defined # 4 204 3 201 201 238 69.0 1e-61 MKTRKEITNLTITAVFIALLFIQTFVPNVGYVRILPSLPAITTIPLTIAVYGTLMGPKWG LGFGLVWGITRLVVAYTQPGDMVSLLLFQNPVISLVPSVLAGFFPGLISQKFKDRDAHIQ KIGYMLSGAVASLTNTILVILLTDLMFMSNSSTLTSYLGHFCQSTPLLVILVTALGFNGL VEAIFNAILVPIIVTPLNLVLKRA >gi|227862669|gb|ACKR01000062.1| GENE 4 2237 - 2740 307 167 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 4 153 7 155 164 122 42 3e-27 MKAIFPGSFDPITNGHLDIISRASKLFDKLVVVVSNNTSKNGMFSPQQRYQFVKDAVSVY PNVSVSLVQSDLTVNLVHELNADVIVRDVRNNEDFVYEQQIALMTKKMDPNIETLILFSN PECSYISSSIVREIMLFGGDISDAVPACVNRALIRMKNQHMARSVSL >gi|227862669|gb|ACKR01000062.1| GENE 5 2760 - 3674 426 304 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145636669|ref|ZP_01792336.1| 50S ribosomal protein L4 [Haemophilus influenzae PittHH] # 1 299 2 301 301 168 30 5e-41 MDINQIRYLLTIADNDFNLTRSAEVLHISQPAISKAIKDMEFKQQVKIFNRRKGKIVGLT RYGITLVKESKKVYEQYIEMVSKLNELSENSNGTVRLGIAPVIISTVFNDALIAFINQNP GIQLKIIERGAYELQRMLILGDIDLAVIVSPATVEGIYEDLIYENTVRVWFNKEHRFNDF TGPIPFSEIEKEKIVTLTDDFMVTFQLNKRFKGDRLKPNYFLQTQSWDLILNLVQRDKNL IGIVAAPIGKNYSDHAIKNAEITPEFPWKISICHTMNSTEDPTVEYAKNWFLKYFSKYKK ISID >gi|227862669|gb|ACKR01000062.1| GENE 6 3707 - 4696 1301 329 aa, chain - ## HITS:1 COG:BH3898 KEGG:ns NR:ns ## COG: BH3898 COG4670 # Protein_GI_number: 15616460 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase # Organism: Bacillus halodurans # 1 324 195 514 525 312 53.0 6e-85 MAVTAVAMAAHNNGGKVIVQVKRVVKAGSLDPKAVRVPGVLVDYVVPTDNPEMTKQTTDY IYNPDIIKSNIVKDVKQMDLPLDKKKVIARRAAFLFNPDTDHCVNFGIGQYPMYCAMVMK EEGLSDNIVTTVEAGTFGGTSLGGGSFGTAIAPQATIDEPYMFDFYNGGGLDATYLGLAE ADQYGNLNVSKFGPKIAGTGGFVDITQYTPKIVFTGTFTAAGLKEEIKDGKLNIIQEGKV KKFVKHVQQITFSGKVAYDSNQEVWYVTERAVFKLVKGGIELLEIAPGIDLQKDILDQME FKPIISDNLQEMDPRIFQEPVMNIKNDKK >gi|227862669|gb|ACKR01000062.1| GENE 7 4793 - 5281 676 162 aa, chain - ## HITS:1 COG:FN0814 KEGG:ns NR:ns ## COG: FN0814 COG4670 # Protein_GI_number: 19704149 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase # Organism: Fusobacterium nucleatum # 13 162 23 171 528 125 37.0 4e-29 MSVKVIDSKTAAELVPDNASVALDGCLGTDVAEEILEMMKNRYQETGHPKDLDVWYGCGI GDNKGSAVENFAEKGMLRRVVGGLGSLAPKLAPMVADNDFEAFNFPQGTISQLFRDAAAH RPVLVTHTGLGTFVDPENDGGRLNEAAKNSTLVNRIKIHGKD >gi|227862669|gb|ACKR01000062.1| GENE 8 5587 - 6525 1251 312 aa, chain - ## HITS:1 COG:lin2273 KEGG:ns NR:ns ## COG: lin2273 COG2070 # Protein_GI_number: 16801337 # Func_class: R General function prediction only # Function: Dioxygenases related to 2-nitropropane dioxygenase # Organism: Listeria innocua # 4 304 3 302 309 283 52.0 4e-76 MNRVTELLGIKYPVVQGAMQEVATADLAAAVSNGGGLGIIAAGGKTPDELREQIQKATKL TDKPFAVNLMLMDKNTPEHVKVIIDEGVKIVTTGAGTPKPYMSDLKAAGIKVMPVIPNVK IAKKMEEMGADAVIVEGMEAGGHIGGTTSMVLWPQIADAINIPLIAAGGIGDGRGVVEAF VAGAEGVQCGTIFSIAKESPVGDNWRKAVIDATDTGTAVVGSTIKGGATRGIANEEAGKL FELEKTGVSRDEFNSALNKGLYVGVREDDPDKSFFMAGEVAGLIKESKPAAEIVKDLMDD AQKVLNKNIEIM >gi|227862669|gb|ACKR01000062.1| GENE 9 6572 - 7366 1083 264 aa, chain - ## HITS:1 COG:CAC2712 KEGG:ns NR:ns ## COG: CAC2712 COG1024 # Protein_GI_number: 15895969 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Clostridium acetobutylicum # 8 258 5 254 261 248 52.0 6e-66 MSFNKYENVLLDEAEDGIAVLTINRPKALNALNLATLQDIGDALREVKARDDIRVLIVTG SGAKSFVAGADIKEMQNDNVTEALKLSKLAHSLFGEIEHLPQFVIAAVNGYALGGGCELA CSCDMRIGSTKAKVGQPETGLGIIPGFGGTQRLTRVVGRGKAKELIATCDMIDAKEAYRI GLFDEIAEPDELMDKAMEIAHKIMKNAPLSVARAKYSVDRGADLPLDIAIDLESQIWAEM FGTADQKEGMAGFVEKREKNFTGK >gi|227862669|gb|ACKR01000062.1| GENE 10 7734 - 8489 948 251 aa, chain + ## HITS:1 COG:SPy1854 KEGG:ns NR:ns ## COG: SPy1854 COG0580 # Protein_GI_number: 15675676 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Streptococcus pyogenes M1 GAS # 1 233 34 297 315 216 46.0 5e-56 MSGPWISRYIAEFFGTAILVILGNGAVANSFLNGTTGNGKDGQSNGGWNFIAWGFGFGVM LPAMLFGSISGNHINPAITIGEAVCGIFPWAHVVQYIIAQMLGAIVGQLLVVAIYWVYFK ETPNNEGAILACFSTGETLNNKLNGFISEFIDTAILGFVAMGLYRGMFFKQSIDIANIGI GLIITALVMAGGGPTGPALNPARDLGPRIVHAILPIPNKGDSNWDYSWIPVVATTLGAIL GIWLYKISFGL >gi|227862669|gb|ACKR01000062.1| GENE 11 8561 - 9358 558 265 aa, chain + ## HITS:1 COG:L34494 KEGG:ns NR:ns ## COG: L34494 COG0596 # Protein_GI_number: 15672802 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Lactococcus lactis # 3 257 4 261 267 103 30.0 5e-22 MNFLTNDGIKINYHVKGNGKPLIFVTGFGGHQEIGKLQVDYFSELGYQVITYDHRNFGRS ERTKKGHTLNRLTYDLIELVEHLGIKKAAFIGHSMGGSVLYNLIRLKPSIVQLAVIIDQT PFMINTTDWKYGFMNYTVDNYIEEAKKVPNVHETLHGLDVRVMPGLKEAKVAHPFSRTDN FDLLCEHATKDWRKVVQNASMPIFVVAAIKSPYYNSDFTTWMTQQNDNVKATLVANSGHD IMAEVPDHFNKILYNFLLENHYSSR >gi|227862669|gb|ACKR01000062.1| GENE 12 9433 - 10584 1083 383 aa, chain - ## HITS:1 COG:SPy1694 KEGG:ns NR:ns ## COG: SPy1694 COG1820 # Protein_GI_number: 15675552 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Streptococcus pyogenes M1 GAS # 1 380 1 380 382 343 44.0 3e-94 MSYFIHAKKFYLDHGVEERGYLEIQDNGQFGFYYSEDEKPKSAAILDFKNFSIAPGYVDT HIHGLMNNDVNDCDWNEINKISEKLLQYGVTSWMPTTVTTSSEKLDEICKTFAAHKGQEK GAKILGIHFEGSYFTKEHGGAENPEFMEDPSIEEFDKWYRDSDGMLRKISLAPERKNVPQ FVRHIVKKGVVASLGHTSATYEEARKALDAGATMFNHTFNGMNLLSQHTPNIIGCALTAD DVFDEMIADGHHIKPIILQMLFDLKGPNHIVLMTDCLRTGGMPDGEYVLSGMKVTVRNHI ALLENGKLAGSTLTLDKAVRNLVNWEVCKPYEAIKMATYTPARSLNENCGCILPDRDADF NVLDSNLNVLKTFVNGKEKYSVK >gi|227862669|gb|ACKR01000062.1| GENE 13 10708 - 11400 873 230 aa, chain - ## HITS:1 COG:SP1330 KEGG:ns NR:ns ## COG: SP1330 COG3010 # Protein_GI_number: 15901184 # Func_class: G Carbohydrate transport and metabolism # Function: Putative N-acetylmannosamine-6-phosphate epimerase # Organism: Streptococcus pneumoniae TIGR4 # 3 230 7 233 233 285 64.0 5e-77 MKKEEFIQKVHNGLIISCQALPGEPLYTEEGGIMPLMAKAAKEAGAVGLRANSIRDIKQI KEVVPDLPMIGIIKKEYPPEKPFITATMKEVDELAKTDVEVIALDCTLRPRHDGKTVAEF IDEIKTKYPDRLLMADTSNFEEAKNAYDAGVDFVGTTLSGYTEESPVSDHPDYDLVKALV DAGMPVIAEGKIHSPEQLKKMIDIGPAGIVIGGAITRPLQIAKTFTSVFE >gi|227862669|gb|ACKR01000062.1| GENE 14 11423 - 11695 277 90 aa, chain - ## HITS:1 COG:SP1695 KEGG:ns NR:ns ## COG: SP1695 COG3458 # Protein_GI_number: 15901529 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acetyl esterase (deacetylase) # Organism: Streptococcus pneumoniae TIGR4 # 1 78 244 321 326 98 53.0 4e-21 MRTLSYIDVKNFAHRIKCPVLMFTGLEDDTCFPATQFAIFNRIESPKKHMLLPEYGHEAM FYYVDSAAFNWLFDTKFPENPPDTSSNALE >gi|227862669|gb|ACKR01000062.1| GENE 15 11695 - 12426 555 243 aa, chain - ## HITS:1 COG:SP1695 KEGG:ns NR:ns ## COG: SP1695 COG3458 # Protein_GI_number: 15901529 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acetyl esterase (deacetylase) # Organism: Streptococcus pneumoniae TIGR4 # 1 223 1 223 326 226 52.0 2e-59 MKDSMSLKDMESYRGRLEVPDDFDSFWSKEIKKIEAKPFKLIKRNFGDNIKNVVFYDLFF KGTDNGIVHAKCIFPAHEKNIPVVFYFHGYMGQALDWVDFMQYAAIGVGVVAMDVRGQQG QSVDNGTYAGNTVLGHIIRGAVDGPDHLFYKNVYLDVYTLIETVADMSRVDKEHLYSWGG SQGGALSLIAAALNPRIKKCATQYPFLSDFKHVLEMGDRGLPYMMSYLGILSFMIHFIRR KTS >gi|227862669|gb|ACKR01000062.1| GENE 16 12447 - 13943 1725 498 aa, chain - ## HITS:1 COG:SA0303 KEGG:ns NR:ns ## COG: SA0303 COG0591 # Protein_GI_number: 15926016 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Staphylococcus aureus N315 # 1 488 1 492 510 484 56.0 1e-136 MSKTGFGMWNWIVLIAYLLAMLGVGAYFTKRASKSTDSFFKAEGKVPAWAAGFSIWATTL SAITFMSTPEQAFLTDWGYSIGTLTIYLIIPILIKWYVPFFRKLQVTTAYEYLEKRFGPV MRSLGSLLFMLYHIGRVAIVIYLPILAITSVSNINPILIAVLVGAMCIIYAFLGGIEGVI WTDVIQGFLLLGGALLICILAVVYTGGPGKIAQVAVDNSKFLSAKDWNPNNLAMFIPVIF AGQFFNSMYQYTASQDVVQRYQTTPSIKATAKSLWTNGWLAIVTIFVFFGMGTFLYCYYH TMGSLPKGFNTSAIVPYFVITKIPAGLAGLIIAGIFAAAQSTIASSLNAISSCFVTDFKQ RYFDKKWKMNDVTLARIIIVIAGVFSLGIAIYLLMGNASQTWNIFLSITGLFGVPVAGIF AAGIFTKSANRVSAVWGVLISAALTYWCQVMGVATLVQPIVAFISSFVIAWLIGLVTPKY AHDITGLTAKTINEKVKD >gi|227862669|gb|ACKR01000062.1| GENE 17 13963 - 15126 842 387 aa, chain - ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 1 378 1 376 379 217 38.0 2e-56 MTYLVQLFLILLLTKIAAHFSVKAKMPSVIGELLVGILVGSAILNWIQPTTFINYFSQLG VIVLMFIAGLEGDLKLLIKYWAPALTVATLGVIFPTGTAYLLCHTAFGFSVKASIFMGLV LSATSVSITVQVLKEMNRLNTREGAIICGAAVADDIICVILLGICSSIYGGGHHTSIIKM IIPMVLFFIIVLLIGKYVVPKFLDIFSDLNASESDTAGAMILCFGAAALAVAMGMSDVLG AYFAGLAISETNYADRLSTKIEPIGYAVFIPVFFVSIGLQISFNGMGKDLLFIALLIIIA ILGKQIGCGIGAKMFHLNWTEANIVGAGMVSRGEMALVVANVALQSQLIDQNHYTAMIVV TVITTLIAPIILKLFIMRTQRKEVKMN >gi|227862669|gb|ACKR01000062.1| GENE 18 15136 - 15873 773 245 aa, chain - ## HITS:1 COG:no KEGG:lp_3566 NR:ns ## KEGG: lp_3566 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum # Pathway: not_defined # 1 242 1 242 243 199 40.0 9e-50 MKVSVNAAIFVDRLNSGESQIDCLEDVSNLKDKIDNIQVRGEFFKENTKDDELEAIKALC KKNSWGLYYSVPEQFFIDGHVNNSLKDNVEMAKKHQLKHLKYFVGDVKDVDQKEIEDAAK LLEDANVDLTLENLSNETGYLSTVLKGLEAVNQYPNIGFTYDAGNWYWVGENPEVAFKEL KDKVTNYHLKDIKNKKTVMLGEGTTDWEPMILGLDPQIPIFLEYGIDDNKIEQELDKVNA VIDMR >gi|227862669|gb|ACKR01000062.1| GENE 19 16024 - 16887 283 287 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 1 280 1 309 323 113 28 2e-24 MSKKYLAFDVGGTTIKYGIVDENLQISDRGKVDTLHNKDGHILKSLIKVTKEMIQKYQLD GIGVSTAGIVGDDGSIMYAGPTISDYQGTPIKKELERTFKIPVSVVNDVSAALLGEKLAG SVKNASTIYCVALGTGIGGAFWADGHLFNGYHQTGNSIGYTLFDPITSTNYEQRSSTIAL QKELEPLGIDPIEAFARAKKGSLREKKIIDAWALQVAEGLSSVLLLLDPEVLVIGGAVSK QGDYLKDLLDEKLNQILPPNLCKTVLKMASLGNDAQLYGGISSIFEN >gi|227862669|gb|ACKR01000062.1| GENE 20 17167 - 18039 1206 290 aa, chain + ## HITS:1 COG:FN1475 KEGG:ns NR:ns ## COG: FN1475 COG0329 # Protein_GI_number: 19704807 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Fusobacterium nucleatum # 1 288 1 288 290 325 58.0 5e-89 MQKVYAALMVSFDEDGNIDEKGTREIIRHDIDVEGVDGLYVGGSTGENFMLGLEEKKKIF EIAWDEVDQQVDLIAQVGGPNLKEAKELAKFVTELGYKTISAVTPFYYNFTFDEIKHYYD EIVKDVDAKLLIYSIPALTGVSLSLDNFAKLFSNPKIIGVKYTNADFYLLERLRERFPDK LILSGFDEMLLPALIEGVDGCIGSTYNVNARMVKEEIAAYNNGDIAKAQELEHKKNDIIT ALLNNGIYPSIKLVLQKMGVHAGYNREPMAKYTDKVIEGADEIYAKYFNK >gi|227862669|gb|ACKR01000062.1| GENE 21 18144 - 18983 483 279 aa, chain + ## HITS:1 COG:lin2927 KEGG:ns NR:ns ## COG: lin2927 COG1737 # Protein_GI_number: 16801986 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 272 1 266 268 197 39.0 3e-50 MTFLTDLQNRLPDLPQQERKIALFILQDPQFIQSANINQLASTIKVSNATITRFARRVNC SSFTDLKVKLAAAAASSQVNTITNQDNSKTTAHQVYDFYNRVLSETQNKLDIKQLKKIIQ LIKSAKRVYFYGIGSSGYTSLEATQRLLRMGISAFAETESNNMFMTSSIISKDDLIIAIS STGSTDSLVRAIELAKKNKATVVALTSYDNSPLAQLADIVVGVQDTNYINDARFINSQFS IMYVIDVITTLLLKNNKYHDRMTRTITSVLNEKYDAYNK >gi|227862669|gb|ACKR01000062.1| GENE 22 19274 - 20908 1362 544 aa, chain - ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 543 1 548 549 302 32.0 1e-81 MRINKKVVSFGLIALTTATLAACGKQSDSNTVSKKQVLNWSEITQLSTQDPSLATDTTSF QALLNTGDGLYRLDKNNKPQLSLATKAKTSNGGKTYDFYLRKTAKWSNGDPLTAKDFVYS YKRTVNPVTKFQMAFYLYQIKNAQAISKGQKSPDTLGVSAPSKYHLRIQLTRPLPYFKIL LSWPLFFPQNQKVVQKYGKLYGTQAKYTVSSGPFTLTRWNGNNKTWTLIKNKNYWDAKNV KLNKVNEQVSESTTTSYNLFEAGKADETGLTGEQVAANKNKAGYHARLSSAIKRLELNEN KVPAFKNLKVRQAFSLAINRKQLANNVLKDGSIPAKGFVPSGMGNNPKTGTPFEDDAYVK SAVSYNLAKAKQLLREGYKESKTNSIKITLLVSDDDTSKQTAEFLQSKLDQLPGVQISVQ TIPYTQLISRQTAGNYQATIKNWQAVFGDPINFLDVFQKGSSYLNNGWNNNQFNKLLNES ENVYGNQPVKRWARLVEAEKVLMKDQGTIPLVQVAKPQLLKTTVKGVSFNPTGVPYDFKN VRIG >gi|227862669|gb|ACKR01000062.1| GENE 23 21662 - 22735 849 357 aa, chain - ## HITS:1 COG:no KEGG:LAF_1481 NR:ns ## KEGG: LAF_1481 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 1 357 11 367 367 466 62.0 1e-130 MLSVILACVIIFCGYYIYLALHYYRIPDNQRLKINNNQSQLLKAGRSYKATTYNVGFGAY NHDFDFFMDSGQLKDGKKLQGHRGTAISKQAVLDSTNGVIQTMKKQNPDFMFFQEIDTDS TRSFHVNQVKKVEDDFPKMDSTFASNFHSAFLAVPLNNPHGTVRSGVLSMSKYKMDSAIR RKYPVSSVPIEKFVDLDRCFVVMRFPVTNGKDLVMINSHMSAYDKGGKMRKAQMKLISSV MEKEYRRGNYVIVGGDFNHALGKDMMTHFEHQEEIPSWVSVLDQKMLSKDFTMIKAQNRE NVATVRATDMKYDPKVNYMTICDGFIVSKNVQAKVYNINTHFEYADHNPVRLEFELK >gi|227862669|gb|ACKR01000062.1| GENE 24 22916 - 23191 201 91 aa, chain - ## HITS:1 COG:no KEGG:LBA1450 NR:ns ## KEGG: LBA1450 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 90 1 90 91 135 75.0 7e-31 MLYPYAEFPGELSITYSQIMVDDNVKGGKKVLVHFEQPTDYGFKEARYELPDYKEIYNYD FTPSETRNNLDILKRNESLIWKCAEEEKTST >gi|227862669|gb|ACKR01000062.1| GENE 25 23201 - 23419 235 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227877709|ref|ZP_03995745.1| ## NR: gi|227877709|ref|ZP_03995745.1| hypothetical protein HMPREF0506_0746 [Lactobacillus crispatus JV-V01] # 1 72 1 72 72 133 100.0 3e-30 MQVLNDLKMPNKETLYFNDHIVPWIEKEEWANNEHTEVALTFKKNTPVDIINRFLICRSE LAINYTADYKIV >gi|227862669|gb|ACKR01000062.1| GENE 26 23467 - 23802 432 111 aa, chain - ## HITS:1 COG:DRB0141 KEGG:ns NR:ns ## COG: DRB0141 COG4226 # Protein_GI_number: 10957478 # Func_class: S Function unknown # Function: Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters # Organism: Deinococcus radiodurans # 5 110 4 109 168 93 40.0 1e-19 MKKELSYKGYYGSVEYSLEDDVLYGKVIGIKGLLSYEGQTLDELRKDFQGVIDEYLEDCK VQGIMPQKSYKGSFNVRITPELHMKAAAYAASHAESLNSLVEKAIKKYVNA >gi|227862669|gb|ACKR01000062.1| GENE 27 23802 - 24047 173 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227877711|ref|ZP_03995747.1| ## NR: gi|227877711|ref|ZP_03995747.1| hypothetical protein HMPREF0506_0748 [Lactobacillus crispatus JV-V01] # 1 81 1 81 81 135 100.0 9e-31 MVNHKKTIEKIKAESVNIAYTEAESLLEWLGYTKLNKGKTSGSRVKFIKGNKPIYLHKPH PRKNLLKYQVKDLKSNLRGEI >gi|227862669|gb|ACKR01000062.1| GENE 28 24405 - 25394 985 329 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01449 NR:ns ## KEGG: LCRIS_01449 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 329 1 329 329 453 99.0 1e-126 MKSKLTVLVAISAALTLAGCSQSTQGNSNSQSQSEKSSQVSKSNSEKTGTSESSNSQNSA KLSAENMDYKTQVSAISVYAAQKYGDTWEIAVNAAKNGNLGVAFRTKAATGITSDDSGYV YEVSGTGKSSNARYMLNGDGAQKKITIFVKQRNLGTVTLQDVVDYINKNNDVDLVQSLAK NAKLDVKLEGDNDNAAGAKESASAVIPSSLQGTWYTADTGNGNIDTLTVTANKINDEAGF SMDVKAKNSGSSTSSGYMKQATINGINFYSFTNMGQKPGQGSTYLAPHTENGQSVIVSAN SKGTTNAVYWKSEALAKQNSNKQFSDLQY >gi|227862669|gb|ACKR01000062.1| GENE 29 25539 - 26411 693 290 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01450 NR:ns ## KEGG: LCRIS_01450 # Name: not_defined # Def: ABC transporter # Organism: L.crispatus # Pathway: not_defined # 1 290 15 304 304 512 99.0 1e-144 MINLTACQSQKQTNNRQTIEKSGVTQKQTPKRLIVKSMSDTEKSSAISIYGSMKYGDAWK TAYSDAKKNRLSISVKNRTGFNWIKKGRGYIYEVTGNGQENNAFYTMKSETVYFYNQKKN LGVASLSEIASYLNEHNQVKSVEKLATKTTLAAEVTSDKYGVKGDDGLALVPTRLLGTWY NYKGKKLVITDHTVNGEEIHHISNSGVAAESLDQTKKWARARIENINGLNCYHVQTLNAQ DFGLLYSVQKDNGNTAVVTYSVDTGHYTATYWKSTKIAKEHRNAEFKTLN >gi|227862669|gb|ACKR01000062.1| GENE 30 26743 - 28080 1699 445 aa, chain - ## HITS:1 COG:SPy1877 KEGG:ns NR:ns ## COG: SPy1877 COG0174 # Protein_GI_number: 15675696 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Streptococcus pyogenes M1 GAS # 6 444 4 446 448 525 57.0 1e-149 MSKQYTAEEIKQEVEDKDVRFLRLAFTDINGTEKAVEVPKSQLDKVLTNDIRFDGSSIDG FVRLEESDMVLYPDFSTWTVLPWGDEHGGKIGRLICSVHTTDGKPFAGDPRNNLKRVLGE MNEAGFDTFDIGFEMEFHLFKLDEDGNWTTEVPDHASYFDMTSDDEGARCRREIVETLEG MGFEVEAAHHEVGDGQQEIDFRFDDALTTADRCQTFKMVTRAIARKHGLFASFMAKPVQG QAGNGMHNNMSLFKNGKNVFYDKDGEFHLSNTALYFLNGILEHARAITAIGNPTVNSYKR LIPGFEAPVYIAWAAKNRSPLVRIPSAGEINTRLEMRSADPTANPYLLLAACLTAGLNGI KEQKMPMKPVEENIFEMTEEERAEHGIKPLPTTLHNAIKAFKKDDLIKSSLGDHLMHSFI ESKELEWSKYSQSVSDWERQRYMNW >gi|227862669|gb|ACKR01000062.1| GENE 31 28216 - 29466 1459 416 aa, chain - ## HITS:1 COG:SA1148 KEGG:ns NR:ns ## COG: SA1148 COG4100 # Protein_GI_number: 15926890 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Staphylococcus aureus N315 # 6 408 2 403 412 404 49.0 1e-112 MNNLPEKLQKIVKEVDQQIAPKLVEIEDQIVYNTAKVLAAYQANDVAEADLNGANGYGDD DMGRDKLDKIYAQVFQTEDAVVRPQFVSGTHTLFVALAGNLKYGDTLTYLTGQPYDTLQK VIGLTDDKRGTLVERGVHFSYVPLTDDGLVDYDEAEKVLKRDQPKIVAIQRSRGYSTRKT FTVDQIKDMIAFVKRVSPKSIVFIDNCYGEFSEKHEPTEYGADLMAGSLIKNAGGGLAKT GGYIVGKKDLVENAKLALTAPGCTDEGATIGNLHDFYEGFFLAPNVTGMAEKGMIFAAAL FAKMGLNVTPAWDEKRSDIIETIIFGDPDKMVKFVQEVQKNSPIDSFVTPEAVHMEGYED KIIMAAGNFVSGSTIEFSADGPIRPPYAVYMQGGLTYAHDKVAIINAVRDTFFNKK >gi|227862669|gb|ACKR01000062.1| GENE 32 29459 - 30379 822 306 aa, chain - ## HITS:1 COG:BH2366 KEGG:ns NR:ns ## COG: BH2366 COG0324 # Protein_GI_number: 15614929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Bacillus halodurans # 2 298 3 300 314 261 47.0 2e-69 MKKVLAIVGPTAIGKTNLAIDLAKRLNGEIISGDSMQVYQEVAVGTAKATAEEQAQVKHY LVDTQSVFDEYSVKDFVDQATKAIEEISQKGKLPIIAGGTGFYVNALLNKMQLGEKTPEE RSVSQKWENYLKEKGAEKLWQVLNEQDPKAAEKIPVANSRRTMRALTVIERTGKKFSEQQ KQIEPRYDYLIIGLNSDRQEIYRRINLRVDKMMEQGMLDEAKFIYQNRAREYQVLQAIAY KEFFPYFEEQETLEHCIEDLKTASRRYAKRQLTYFRNKLPVVWFDPLDDSGCEQKILKKV KEWKNE >gi|227862669|gb|ACKR01000062.1| GENE 33 30457 - 30858 528 133 aa, chain - ## HITS:1 COG:lin1388 KEGG:ns NR:ns ## COG: lin1388 COG0607 # Protein_GI_number: 16800456 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Listeria innocua # 37 129 32 124 126 95 51.0 2e-20 MSSFLIVLDLVLLVIILVMVGIWAWNKIQAKSIGGELTNEEFKEGMRKAQIIDLREKEPF KRKHIDGARNLPYTMLKYQYTELRSDLPVYLYSDSKTITLRAARFLKKKGFVSIHWLKDG FEAWDGRTKKSKY >gi|227862669|gb|ACKR01000062.1| GENE 34 30917 - 31156 251 79 aa, chain - ## HITS:1 COG:SPy1530 KEGG:ns NR:ns ## COG: SPy1530 COG4483 # Protein_GI_number: 15675429 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 66 1 66 67 72 57.0 2e-13 MKTLYDVQQLLEKYGILVHVGKRIWDIELMALELDNINRAGLIDQHDYLIAKMILSREHR IEVKNEQKKALKDPKNDSQ >gi|227862669|gb|ACKR01000062.1| GENE 35 31156 - 31842 721 228 aa, chain - ## HITS:1 COG:BH1421_1 KEGG:ns NR:ns ## COG: BH1421_1 COG0705 # Protein_GI_number: 15613984 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Bacillus halodurans # 4 179 178 349 349 109 35.0 5e-24 MNTKRKINLSQSFVTLGILVVLLIVFLVEVFLGGSENTNVLMKMGAMNNFAVVAGHQWWR LFMAQFLHIGIMHLVSNAIIIYYMGQYMEPLMGHVRFLVTYLLAGVGGNLMSLAFSADRG LSAGASTALFGLFGAMTAIGLRNLHNPMIAFLGRQAFVLALINLALDIFVPGIDIWGHIG GLIAGFLLAIILGDRVMKTYNPKWRVLAAAVLVVYVVWTVRTGMIINF >gi|227862669|gb|ACKR01000062.1| GENE 36 31877 - 32440 609 187 aa, chain - ## HITS:1 COG:BH1417 KEGG:ns NR:ns ## COG: BH1417 COG0212 # Protein_GI_number: 15613980 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Bacillus halodurans # 1 187 1 185 186 92 32.0 5e-19 MEKSELRKEQISKLKEFANTKEKRAEDAILLEKLMSTDLIRRSQTIGVTASLPLEVDTSE LIARLWDKGKEVYLAKARGDQNHTLDFLRYTYMSKLVKSKFGVEEVADEDAKINNDLDLV IVPGLAFALDSHVRLGFGGGYYDRFLAKHDPKTVALANSKMTFDTSIWPIEKTDIPVQTI VTPDKIY >gi|227862669|gb|ACKR01000062.1| GENE 37 32495 - 32644 263 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|58337773|ref|YP_194358.1| 50S ribosomal protein L33 [Lactobacillus acidophilus NCFM] # 1 49 1 49 49 105 100 4e-22 MADNIILECTECGDRSYLSKKNKRKHPERLSLKKYCPVERRATLHRETK >gi|227862669|gb|ACKR01000062.1| GENE 38 32720 - 34828 2305 702 aa, chain - ## HITS:1 COG:SP1673 KEGG:ns NR:ns ## COG: SP1673 COG0768 # Protein_GI_number: 15901508 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Streptococcus pneumoniae TIGR4 # 13 673 5 652 680 402 36.0 1e-111 MNYFRKNSGTGSNKHSSTPIRMRIILGVILVLFAMLIGQLAYLQLVYGSRFKAEVQKTDS TVVSHQVPRGVMYDAKGRVLVGNKATNAITYTKSASTTTADIYKISNALSNYIKISDEKP TKQMAADYYLANEDNNTKISNALPKSAKIDADGNKKTSAEIYQAELAYVEKMNPQLTTRQ KTAALIFNKISGAYTLSTIYIKNKGLTDREIAQVGEHLSELPGVGIGTDWQRSYPNGSSI QSIIGSVSTEKSGLPSDSLQYYLRNGYSRNDRVGTSYLEKEYEPLLKGTKSTNQVITKSN GNIQQTKTVYNGQAGASLMLTIDAKYQKQVQATLKRVYSTAVGNGAARYSNGAYAVAMNP QTGALLAVAGINRNTNTGKTTDNALGVINQSFVMGSVVKGATVGGGLINKVITPENNTLP DTAIYLPGSPVKKSVYPVGTFSSLDAETALEVSSNIYMMYLAMKWVKASYVPKSYIHMPN DAFDILRRNFAMFGLGQKTGVDLPGEVSGIEGKSFNDKGNILSGSVLDLAYGNYDAYTPI QLAQYVSTIANGGKRLQPYIVQSVGKTSKNGKKIYISYNKKPNVQQVIPWTLAELNVVQT GFYRVVHGTNGWGTAHPLKNVKPSIFGKTGTAQTFYYDAEHPNRKHNIELINATFIGYAP SKNPKLAVAVVFPGLDPDGEGTYTLQVAKAMVQDYFKLHSTK >gi|227862669|gb|ACKR01000062.1| GENE 39 34916 - 37555 1422 879 aa, chain + ## HITS:1 COG:SPy2211 KEGG:ns NR:ns ## COG: SPy2211 COG4485 # Protein_GI_number: 15675943 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 7 863 4 849 858 172 24.0 3e-42 MMLKFLNSRHIAINRKNIFFWLSFLLPALIFLSYFFYSKNGVLTVDLGQQYVDFLAFFRR NLFSHPLRLIYSFSNGLGGAMLATDAYYLCSPFNLLLFLFPQHFLPQAILIIIALKIGAA GLSSYYYWKQKITNHFYALAASSAYALSGYVIGNHYNLMWLDSVILLPLLINAIDRLLAQ RKNKLILITFLLWFTNFYTGFMALAFGLLYLLSKIFFINKQERLRLNWIYLRKSIAGSFL DAFMLFPVLIEMLQGKASSTASWNLGWQFSPVEQLTKLAEGAYNFHEMQEGMPNIYLTMP FLLLTILYFLSKKINWQRKLANGILLIFLIASLFWTPLVLLWHLGQFPVWYPGRFSFVLI FFALNLGVIALEQKERIAYWQTGLLTLFSLGLIVYIVFNASHFDFLTEDAQIATGAFLAL GILFIGFIYHQHSFAAPFFYLVIELELIVNLVLSLGNLAYQKNSDYQNFTTNVSQAVQYA NQHDSGFYRTEKTFYRSDDDPFSAGYYGLSNFNSISDQKVLNLINNLGFLNNSNSYTNFG GTTLTDDLLGIKYYLLPNDEITTIKSGKQMKYDNSNHRVDASDYHLQKRFSQLYLVKNNA ALPLLFLTSQKTQKINFNSLDITSNQTKFFQAVTGAKVQLFKQINWPKAKLINVTSMKND QLQYNRKNNKQIARIIFNFKPQTDDSYYIEMPGEIDDNAISMTVNGANINLAVRDQNARL INLGSHQRGQRLQVTFELKKDKLDLSGIHFWRLNTQKLEQIIHRFKQKQPNFKQTSALII KSNHFTTKKMMTLASTIPNNINWLVLDNGKIINKNKTLFMNAFLNFKLNPGKHQITLIYV PWVLLLGMLVSLISLTILLICKKKATVSANSKTFTRPTV >gi|227862669|gb|ACKR01000062.1| GENE 40 37618 - 38541 1302 307 aa, chain + ## HITS:1 COG:alr4655 KEGG:ns NR:ns ## COG: alr4655 COG2971 # Protein_GI_number: 17232147 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted N-acetylglucosamine kinase # Organism: Nostoc sp. PCC 7120 # 3 275 1 291 320 84 27.0 2e-16 MALKYQIGVDAGGTHSTAIAYDETGKEIGRAEGGPGQINADYEGGIKNISDTINELIDKV DGDCMRVLVGIAGLSVVGNAPEVAATISSRINNLPTRAITDSLLALYAGLEGDDGALVIA GTGSVYNGLQNGHLIAVGGYGNILGDEGSGYAIARSAMQSALLSWDKREDNALIQMFTKL FGVEHMDECNAKFYKMSNPEVAGMAVHVAQLADEGSDDAIKVIKKQAHLLARDIIIGLDR YEDPKPMKIALTGSVLANNEMLRGLVEDEVKNKYPDAIFSISNGENARAVLFDKSKDYRY FTNHEDR >gi|227862669|gb|ACKR01000062.1| GENE 41 38809 - 39057 213 82 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01462 NR:ns ## KEGG: LCRIS_01462 # Name: not_defined # Def: addiction module antitoxin, RelB/DinJ family # Organism: L.crispatus # Pathway: not_defined # 1 82 1 82 82 149 100.0 3e-35 MAQISVKIDDKLKKEAQDILASYGVDISTGIRMYFKAIVRSNGIPLELRPMTELDEANYE ADNHIYHGSYSSFEEYKKAMRK >gi|227862669|gb|ACKR01000062.1| GENE 42 39060 - 39353 322 97 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01463 NR:ns ## KEGG: LCRIS_01463 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 97 1 97 97 170 98.0 1e-41 MQVNPTKRYYRAYKRYERKHYPMDYVDDCVEAILTNDKEFLAKHKDHPVGKNRKMHVNRQ YNDDWLLYYRIDKETHELILVLVALGTHDELDRFANM >gi|227862669|gb|ACKR01000062.1| GENE 43 40101 - 40385 181 94 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] # 1 94 1 94 96 74 34 1e-12 METISKKQLVDQIAAKTDATKTDINTILDAYIDVVKSNVAEGNKVQLVGFGAFELRHRAA RKGRNPQTGKEIEIAASNVPAFKPGKSFKDEVNK >gi|227862669|gb|ACKR01000062.1| GENE 44 40430 - 41203 283 257 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 224 1 226 245 113 29 2e-24 MLKASQIDFSYGSKQLFNQFSLSLQEHQITTLIGPNGSGKSTLFRLLTRAIRPSAGTITL DGQDIWQLAAKDFAKKVAIVHQQNQLYDQITVKELVKMGRLPYHSLMGDEENGSARLQQI MQELEIADLADKFIAQLSGGQQQRVWLATALAQEPEYLFLDEPTTYLDLHFQYRFLDLVK KLNRKQNLTICMILHDLNQALQYSNQVILLNQGRIQKQGRPEEVITAQTIRQNFGIDCEM IETEQGKVLLMAGSEAK >gi|227862669|gb|ACKR01000062.1| GENE 45 41196 - 42122 830 308 aa, chain - ## HITS:1 COG:BH3296 KEGG:ns NR:ns ## COG: BH3296 COG0609 # Protein_GI_number: 15615858 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Bacillus halodurans # 1 306 1 323 328 187 39.0 3e-47 MKKKVIWINLILAVLLISTIFFALTHGASNFSMQKMTNSQLNILFNIRVPRIISALVAGA SLSVSGAFFQATLRNPIAEPGIMGISSAASLCQLLAVIILPEIFFGKIIFAIIGGLLAFG LLLLFQKKMTPYQLIIIGVALNAVFTGMQEVFTNSQNSGSSLATSSWGSTMYLLIIGVVG LIFAICFMNWANYLKVNDEELTSLGVSAKTLRLVLMLIAVVLAATTTACIGVLAFIGIIV PQVARLLLGYDYQKIIPFSIFAGAWFLLFVDTIGRVITAPNEIAANIILAIVGGPVMILI LWKRQKNA >gi|227862669|gb|ACKR01000062.1| GENE 46 42128 - 43009 879 293 aa, chain - ## HITS:1 COG:BH3297 KEGG:ns NR:ns ## COG: BH3297 COG0614 # Protein_GI_number: 15615859 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus halodurans # 29 291 40 302 302 213 39.0 4e-55 MKKRKGLIIGLIIFLVAIVGVAIGAKRLIDQKVANNEKIVATSAAITEIFDKLNVNLAGV PKTQAKLPARYQKVPKIGSPMKPSVEKIASLNPTRVYAVSTLKDQYDQSFKEQGVKVTYL KLDSVADLEATLSSLGKQYYRQRQADYQIGLIKKAVKKAKARVHGRKPRVLILMGLPGAN YMILTNRSYLGDLVRIAGGENIYHSDSQIYLSPSNDSLATKNPDVILRLEHALPNVTLPQ FKQEFKKNSVWKTMKAVKTGRVYDLQQPDFNASANMNVSQALNKLSNWLYPGK >gi|227862669|gb|ACKR01000062.1| GENE 47 43006 - 43725 712 239 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01468 NR:ns ## KEGG: LCRIS_01468 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 239 1 239 239 421 99.0 1e-117 MKNIAKIISFPFLLLTCLFIFGVTVSAQSVSYRTYKYGTHQTSMADGYYARPAQVVVDDN QYLVTMTIRTKKDLSPYPVQVLTIDGQAPLNVVKTRHGSDYDYRYSFRTNNLKRDISSQI KIDVPHVYQATHNITFAFDTTQLPKLTNKKERASHAESAIKRSAPQVKNKSVKPKEQLAQ KKQAAIANRQIAQNARNQRANQQRQRNFYYVILAGVLSSLILIGVAVLIVVNAKERKSK >gi|227862669|gb|ACKR01000062.1| GENE 48 43725 - 44294 332 189 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01469 NR:ns ## KEGG: LCRIS_01469 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 189 11 199 199 297 98.0 1e-79 MVTKFQPVSLGIGSISNLRFTKQAGKDIWTYQVHFKSLNQLKKQAQGSLRLSVPIANIHD RLFKVWFAFGVKNVAHSSTVSKALTEANSSTDSSSTSDAITAANDDSSKDAKNATSSAQP QSKPVKKQQSSSNSSVKPGAKMTPKKKKMATIAAVEYPFLPVIAGFLAFDAAIIGLAFYL RNKILKRKK >gi|227862669|gb|ACKR01000062.1| GENE 49 44440 - 45033 747 197 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01470 NR:ns ## KEGG: LCRIS_01470 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 197 1 197 197 271 100.0 1e-71 MNKKLLKLIASSSVAMTLMAPGVAFMQTNPVVMAAEQSQKTVGMTVYKYSKNHRSHAKSM AQGFVGDKVQLTVSQKHVTKMTIHVDGKNSPMGKGQNVNKIVKSLKINGVSGKKENVSAD KSSFDFVFAGKAFKNNGWVKMQVTIDFGGKMTEQAWVKYDKVSGLTTSKKKTDKKQKKAS KKSVKKVSKKSTHGQRR Prediction of potential genes in microbial genomes Time: Wed May 25 06:23:28 2011 Seq name: gi|227862667|gb|ACKR01000063.1| Lactobacillus crispatus JV-V01 contig00065, whole genome shotgun sequence Length of sequence - 903 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 28 - 87 11.2 1 1 Tu 1 . + CDS 117 - 896 986 ## LCRIS_01471 S-layer protein Predicted protein(s) >gi|227862667|gb|ACKR01000063.1| GENE 1 117 - 896 986 259 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01471 NR:ns ## KEGG: LCRIS_01471 # Name: not_defined # Def: S-layer protein # Organism: L.crispatus # Pathway: not_defined # 1 259 1 259 259 357 100.0 3e-97 MRKNTKIILTSLALLASASVLAPSAVVSAADQPATNVAATTATSQNSDLQTITMTITKTG STTPSEAAMFLGNSAQVNVKDGKVTEVIIHVDGSKAPMTKGQDMSKMVASLTLNGVAGKQ ENVAKDGSSLDYVFSADAYKEGAGSLEFGLNVMGKTMNEKADITLGKVAEDTANKDANTT SDKTQTDAAAAKKTAAKKAKAVKRTLKHNAYVYKKNGKRANKKVLKKGHRVNTYGRAIKL HGKTFYRISKNTYVKKANF Prediction of potential genes in microbial genomes Time: Wed May 25 06:23:40 2011 Seq name: gi|227862640|gb|ACKR01000064.1| Lactobacillus crispatus JV-V01 contig00066, whole genome shotgun sequence Length of sequence - 25207 bp Number of predicted genes - 26, with homology - 26 Number of transcription units - 13, operones - 7 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 84 - 596 443 ## COG3344 Retron-type reverse transcriptase - Term 689 - 721 4.3 2 2 Tu 1 . - CDS 736 - 1038 277 ## LCRIS_01474 hypothetical protein - Prom 1153 - 1212 6.7 3 3 Op 1 . - CDS 1220 - 2038 703 ## LCRIS_01475 hypothetical protein 4 3 Op 2 1/0.333 - CDS 2035 - 3306 1026 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase - Prom 3348 - 3407 5.6 - Term 3459 - 3503 10.1 5 4 Op 1 . - CDS 3525 - 4730 1359 ## COG1228 Imidazolonepropionase and related amidohydrolases 6 4 Op 2 . - CDS 4741 - 6372 1491 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 6409 - 6468 9.0 - Term 6534 - 6561 -0.8 7 5 Tu 1 . - CDS 6769 - 7584 891 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 7662 - 7721 6.5 + Prom 7601 - 7660 6.3 8 6 Op 1 . + CDS 7813 - 9366 1469 ## COG2132 Putative multicopper oxidases 9 6 Op 2 . + CDS 9379 - 9555 242 ## LCRIS_01481 membrane protein 10 7 Tu 1 . + CDS 9931 - 10782 794 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Term 10790 - 10838 7.3 - Term 10778 - 10826 7.3 11 8 Op 1 . - CDS 10847 - 11758 1095 ## COG0039 Malate/lactate dehydrogenases - Term 11767 - 11816 6.1 12 8 Op 2 . - CDS 11820 - 12296 734 ## COG0782 Transcription elongation factor 13 8 Op 3 40/0.000 - CDS 12375 - 14795 3116 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 14 8 Op 4 . - CDS 14799 - 15848 1244 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit - Prom 16049 - 16108 3.3 - Term 15887 - 15935 1.8 15 9 Op 1 16/0.000 - CDS 16132 - 16971 804 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 16 9 Op 2 34/0.000 - CDS 17007 - 17747 236 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 17 9 Op 3 17/0.000 - CDS 17757 - 18428 692 ## COG0765 ABC-type amino acid transport system, permease component 18 9 Op 4 . - CDS 18409 - 19086 637 ## COG0765 ABC-type amino acid transport system, permease component - Prom 19304 - 19363 6.7 - Term 19115 - 19169 6.2 19 10 Tu 1 . - CDS 19371 - 19721 457 ## COG1733 Predicted transcriptional regulators - Prom 19756 - 19815 3.9 - Term 19735 - 19783 -0.8 20 11 Tu 1 . - CDS 19829 - 20596 164 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 - Prom 20804 - 20863 6.1 + Prom 20609 - 20668 10.1 21 12 Op 1 2/0.333 + CDS 20696 - 20968 352 ## COG1254 Acylphosphatases 22 12 Op 2 . + CDS 21012 - 21977 899 ## COG0706 Preprotein translocase subunit YidC + Term 21984 - 22015 1.0 23 12 Op 3 . + CDS 22024 - 22512 489 ## COG3760 Uncharacterized conserved protein + Term 22581 - 22635 3.8 - Term 22673 - 22708 3.5 24 13 Op 1 . - CDS 22720 - 23901 1401 ## LCRIS_01496 S-layer protein 25 13 Op 2 . - CDS 23970 - 24788 635 ## LJ1642 hypothetical protein 26 13 Op 3 . - CDS 24848 - 25054 118 ## LCRIS_01498 putative protein without homology - Prom 25142 - 25201 8.2 Predicted protein(s) >gi|227862640|gb|ACKR01000064.1| GENE 1 84 - 596 443 170 aa, chain - ## HITS:1 COG:BH0039 KEGG:ns NR:ns ## COG: BH0039 COG3344 # Protein_GI_number: 15612602 # Func_class: L Replication, recombination and repair # Function: Retron-type reverse transcriptase # Organism: Bacillus halodurans # 1 119 205 320 418 95 42.0 3e-20 MDKELEQRGLRFVRYVDDCNIFVKSGKSAKRVMKSITSWLERKLFLKVNTTKTKVVRPTK SNFLGFTFWKTGENWQAKPGDDRKAKLYDKIRELLSRHKAVAQPLSLVFTKINQVVKGWG AGVFGFNAKEVAKMWQEAFDTPTSISTVIYAVIPGRKNKDVVADFKDIFA >gi|227862640|gb|ACKR01000064.1| GENE 2 736 - 1038 277 100 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01474 NR:ns ## KEGG: LCRIS_01474 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 100 64 163 163 168 99.0 4e-41 MLMKRVPWKIVRGFPILGWVSIVSLVFCLLSPYCVRVINAVDFLSLTTSVLAFAGISVTH RLKDLSKISWKILIVALFVFFGMYFMDTLISQIALNLSGK >gi|227862640|gb|ACKR01000064.1| GENE 3 1220 - 2038 703 272 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01475 NR:ns ## KEGG: LCRIS_01475 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 272 1 272 272 420 98.0 1e-116 MKSLKNYGPLIILVLLIDTIAEFIGMQVFKIGKIEVSILPLVFAVILAIIIYLLPLKPIK QLYNDKRVKFAGKYMILIMLPLMARYGANVAPKINEILSVGWVFLIHELGNLGTILFGLP VALLLGLRQEAIGSTLGLGREGELAYISEKYTLDSPKGRGVLGIYLIGTIFGSIVFSILA PVLLGMGFSYQAVAMSSGVGSSSMMTAASSALAALVPKHSETILSFAAASQLLTSFIGTY IMYFLAVPLQRFMYVHLTSLLDKKKEVYPEHD >gi|227862640|gb|ACKR01000064.1| GENE 4 2035 - 3306 1026 423 aa, chain - ## HITS:1 COG:FN1186 KEGG:ns NR:ns ## COG: FN1186 COG1473 # Protein_GI_number: 19704521 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Fusobacterium nucleatum # 53 357 29 295 359 94 29.0 3e-19 MSSFQEYYSELQELAGYLLHNPELGYKEYKTSKAVEAEIAKISTNIKIEHYCKTGLKVMF DNHCPKTIGIIAELDSLYQPGHKDADPETGAAQACGHYTQVTTALALINELMKNDRLNEF GTNLAFIFTPAEEFVDLNWRKKHKLAGDFTYFGGKQEAIKLGVFDDIDYCVSVHAIGEDF ERRTIEINCDLAGFNFQYFDFFGKASHAAFAPEEGVNAQSIATLFTTALAFKRQQLKNPN QIRFNPVMIGDNTESINVIPDHVSMGTDIRYFDVEYAQQLMKQFNQAAEGCSLALGGNFK SETQVGYLPLRSNRDMNALVKNVFLRNDKISELIENRGYTMAAGDIGDVSYLMPTIQIGY GGWNGTIHGSDFKLVDPVFVLDIFPEFIFNSVLEISNNLNKIRTYRRTNQEYLEQLNKMG AEK >gi|227862640|gb|ACKR01000064.1| GENE 5 3525 - 4730 1359 401 aa, chain - ## HITS:1 COG:BH2935 KEGG:ns NR:ns ## COG: BH2935 COG1228 # Protein_GI_number: 15615497 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Imidazolonepropionase and related amidohydrolases # Organism: Bacillus halodurans # 8 401 7 389 394 182 30.0 1e-45 MTKTAFVNCNLFVGNEDNLVDNAWFVVDDETGKLTDQGKGKCTADFDKQVDLKGKYVMSG LLNSHTHMGLDSDLKKKFPTTEASTTYAALRDLREALQTGVTYVRSCGTSFDVDCKLVQM RKQYPFEGPQVMPTGMAMSIVGGHGDFKVGLNGEQNASHLVNGPEDMRRAVREQFAKGAK NVKLMATGGIMSLGDEVDDTELSLEEMKMAVEEAHSKHMTVCAHAEGRRGIHYAVVAGVD SVEHGFYLDDNDLALMKKQGTFLSPTLTAGRTIVVHGKDVVPEFSYRKMCAVVDDFYNHV GHAIKEGVRLAMGTDAGTYFNRFSDTPNELVELVRAGATNYPALRAGGLGSAELLKVDQE YGSLEVGKYADFLVLRDNPLEDVAAVGQKDKQVYQHGLRKF >gi|227862640|gb|ACKR01000064.1| GENE 6 4741 - 6372 1491 543 aa, chain - ## HITS:1 COG:SA0849 KEGG:ns NR:ns ## COG: SA0849 COG4166 # Protein_GI_number: 15926579 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 9 536 5 534 551 265 33.0 1e-70 MRKTLKHLFGTTVVALLGVSTLSACSSSQSGAKAPKQELTWMTTSEIQTMDPSKMVDTTG SEQASNVFEGLNRLNKAGKVVSGVATKTNQSKDGLTWTFTLRKNAKWSNGDPVTAEDFVY SLRRTLDPKTQSQQQNEWSNVVNADDVLAGKKAPSTLGVEAKGKYELVVHLKHPVPYFKA LSVGWNPQNKHVVEKFGKKYGTASKYMVYNGPFVQKGWTGSSLNWKLEKNDQYWDKDKVK LQTVNYSVQKTPSTDYNLYQANKLDGAYLDVQASKRLKGQSGYTVYKLDRTEYLTFNVSK HPELANVDFRRAVSMALNRTQLAKTVGGANTVARTFAGPNEYVDGKNFDQYVESKNPANK YMNYNPAGAKKLYDRALKELGKNKLTFTLMGDDDDVSKKVLEFVQSQLEDTFGKKVDVTV RSMPKTTRVKKMLNGDFEAVFTGLTSGYLDPNSQLHTMMTGQSYNFGKWPNKDFDKYMNN SDKELNPTKRLEDLYNAERVLTDQQGLTPLFHDGQAWMVRPSVKNVEFLGGNFSFKDASV SNN >gi|227862640|gb|ACKR01000064.1| GENE 7 6769 - 7584 891 271 aa, chain - ## HITS:1 COG:CAC0629 KEGG:ns NR:ns ## COG: CAC0629 COG0561 # Protein_GI_number: 15893917 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Clostridium acetobutylicum # 1 270 1 267 268 131 35.0 1e-30 MYKIIACDLDETLLSADTHVSVENREAIQKAVAHGVKFVPATGRGYVSVQNTLKEIGLEQ AANEYVISFNGASITENKNNRVLYFDGLPNEIADRLYRHGVELDIAMHVYTQDMVYTYHI DDDERAYMTGRHQFKEIEDKDLSFLEGQKIAKVLYESLDNNYLHRIAAELGPITQELDIS YSSNRYLEFNRKGVNKGAGLMKLAEQLRVPIEETIAIGDNFNDLSMIQAAGVGVGVANVN PAMKEQCDYITQADNNHGAVAEAIDHFIFNN >gi|227862640|gb|ACKR01000064.1| GENE 8 7813 - 9366 1469 517 aa, chain + ## HITS:1 COG:Cgl0921 KEGG:ns NR:ns ## COG: Cgl0921 COG2132 # Protein_GI_number: 19552171 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Corynebacterium glutamicum # 31 465 40 489 513 258 36.0 2e-68 MTDKIYTNYFIEDEDFDKNHFHYKKLSIPQGVEAQPLAVPPVLAPDKETDTDVWFTLESI ESKSQILPGAKTKTWGYNAPLLGKTMVLKRGQRVHVTLKNSLPELTTYHWHGMEVPGPIT DGGCHAPVYPGEEKQIEFTVNQPAALTWLHAHPCPSTAAQVWMGLAMGVVVTDENEAKLP IPKNYGVDEFPVILQDRTFHKDNQLDYRADYDAMGVFGETPLINGTVRPYVDVTTQKIRL LFLGGSNRREWRLHFDDDLVMTQIAGDDSFLPHPIKMTKILVTPGERLQVVVDFKDYHDG DVVNLYTDDFKLIEFRIHKFAPDNSVIPDTLFKPEIPEIAEDLPVRKVTMDDHNKINGKQ FAMQRIDMKQQVSHAEYWDVTNTNSKEHGMLHPFHIHGTHFTVVSRDGEKPFPNEYGYKD TIPVRPGETVRLRVEFPQTGVFMYHCHIIEHEDAGMMAQIEVFDPKHPKTYKLMDMKTLT DAFAKERGIKPEDVWMPGMDTEGCGMEVDSSSGASQK >gi|227862640|gb|ACKR01000064.1| GENE 9 9379 - 9555 242 58 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01481 NR:ns ## KEGG: LCRIS_01481 # Name: not_defined # Def: membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 58 1 58 58 81 100.0 1e-14 MCSGMNNLFWKIIWVIVYAITAYFTFTGKMMMAMYWMAGGMLAESVVSLIYYFVNRQK >gi|227862640|gb|ACKR01000064.1| GENE 10 9931 - 10782 794 283 aa, chain + ## HITS:1 COG:L117444 KEGG:ns NR:ns ## COG: L117444 COG1464 # Protein_GI_number: 15672300 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Lactococcus lactis # 32 282 34 285 286 265 58.0 6e-71 MRKRRRRHIIISTVIGLLIIVAGYFSFFWTPKSSSQTKVSVGIVGASKGDIAIWKSVAKT VKEKYGIILTTKSFDGYDQPDKALKSGDVDLNAFQHYAFLNAWNKANHGGITAIGKTYIA PIRLYSKKYHSLNALPDGATIVVPSDPTNESRALFVLKNAGLIKLKKGKVLVSVADITSN PDHFKIKEVASEQTSRVIDDVDAAVVNNDFAGPAHLGDKQTIFVEPLNKDSEQWINIICA RTKDKNKKIYQEVVKAYQTKKTKKIYKRYYGNKQIAAWDVKLK >gi|227862640|gb|ACKR01000064.1| GENE 11 10847 - 11758 1095 303 aa, chain - ## HITS:1 COG:lin1775 KEGG:ns NR:ns ## COG: lin1775 COG0039 # Protein_GI_number: 16800843 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 2 296 3 297 302 236 40.0 5e-62 MRTVGIIGMGHVGATVAYTLFTHSMVDELILIDKNEAKVNAEYNDLHDTLARNDSYVNVR KQDWDGLEDADIIITAFGDIAASVKTGDRFGEFELNARNAKEVGADIKESGFHGVLINIS NPCDAITQILQETSGLTKNRVFGTGTFLDTARVQRIIGEKLGQDPRNVEGFVLGEHGSSQ FTAWSTVRVNNKIAFQLFGDEEQEKISEQSNKNSFIVAKGKGYTSYAIATCATRLVQAVF SDAHLYCPVSVYNPEYKTYIGYPAIIGRDGIEEEIELKLTSEEKEKLQAAADKIKEHLKQ LKK >gi|227862640|gb|ACKR01000064.1| GENE 12 11820 - 12296 734 158 aa, chain - ## HITS:1 COG:lin1531 KEGG:ns NR:ns ## COG: lin1531 COG0782 # Protein_GI_number: 16800599 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Listeria innocua # 3 158 4 159 160 158 57.0 4e-39 MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHL EDRIAQVEEMLKYAQVVDAESVDPNEVSVGKTITYTEVGTDDPETYTIVGSDESDPLNGK ISNDSPIAQALLGKKKGETVSITTPGGKFDVVINEVKA >gi|227862640|gb|ACKR01000064.1| GENE 13 12375 - 14795 3116 806 aa, chain - ## HITS:1 COG:SPy0769_2 KEGG:ns NR:ns ## COG: SPy0769_2 COG0072 # Protein_GI_number: 15674815 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Streptococcus pyogenes M1 GAS # 148 806 1 657 657 497 42.0 1e-140 MLVSYNWLKDFLDLDGQDPYELAEEITRSGVEIPDRVHPMDGLKKLVVGRVLDCEGVEGT HLHLTHVDVGEDEPLQIVCGAPNVAAGEDVIVALHGARIAGNEKIKKGKIRGMESYGMIC GLQEIGFSDSVVPQEFVDGIYVFPADAEVKPGQDVYEALGMDDYILNFDITPNRADTLGM EGAAYEVGAIINQKPKVEEKVVLKEDGPAWTDSLDVKVDEKLAPKFYLRKLENVKIQDSP LWLQRRLWNAGIRPINNVVDVTNYIMLLTGQPMHAYDAKTFANGKFEVRLANKGEKLTLL NEKEVDLDPKDIIITDGKKPVMMAGVMGGLDSEITSETTDVILESAIFDPTLVRKAALRH ANRTEASSRYEKGVNWDATEKAINMAALLLRNDADATVDEGILKATDQKREPVVVKTTAS YLNKVLGTKLSVDEIVKIFDRLCFKVDVDGDNLAVHVPNRRWDISIPADLVEEVGRLYGY DNLESTQPVLPETHGGYSEKEEMMRRMKAIVEGQGLMEAISYSLTSPEKAVRYTKDPKEL VEVKSPLNSSRSAMRENLMTGLVDAASYNFARKQTQLALFEQGRTYDHDGGKFNEHEHLA AIYSGNTFAENWQHLTQKVDFYFVKGQLTNLFNAIGIGPEKVVYEAKGIKGMHPTRTAGI YIDKQYVGMIGMIAHAVTIADKALRGSELYGYEIDLDTIIPMLTKGVTAVPAPKFPAIQR DLSLLVDKPVTNQEIENVIKSNAGKYLTELKVIDVYAGAHIDVGKKSIAYNLTFLNRKDT LTDDVVNNAMDKIVAALENDLAIKVR >gi|227862640|gb|ACKR01000064.1| GENE 14 14799 - 15848 1244 349 aa, chain - ## HITS:1 COG:L0354 KEGG:ns NR:ns ## COG: L0354 COG0016 # Protein_GI_number: 15673911 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Lactococcus lactis # 1 346 1 346 346 439 59.0 1e-123 MDLFDKLKELHEEGLKQINKAKDEKTLNDVRVELVGRKGELTKILHSMREVAPENRREVG QKVNELRDLFNAQLDEAKENIVHAMLVKKLEDEKIDVTLPGREAHLGSKHPINIILDDLE SYFIGMGYQVVQGPEIETDHYCFEMMNIPKDHPARDMQATFYIDDEDLLRSQTSGDQARV LEKHDFSKGPLKMVGPGKVYRRDDDDATHSHQFMQMEGLVIDKNVTMSDLKGTLELIAKH VFGQDRETRLRPSYFPFTEPSVEMDVSCFNCNGKGCPICKYTGWIEVLGAGMVHPNVLEN AGVDSSVYGGFAFGVGLDRFAILKYGIDDIRDFYTNDVRFLEQFRKEER >gi|227862640|gb|ACKR01000064.1| GENE 15 16132 - 16971 804 279 aa, chain - ## HITS:1 COG:Cj0982c KEGG:ns NR:ns ## COG: Cj0982c COG0834 # Protein_GI_number: 15792309 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Campylobacter jejuni # 35 279 30 278 279 224 44.0 1e-58 MAILFVVVVLVAGYIGISRPGINGTASGDRWNSENNVSSIKRRGYLRIAVFGDLPPYGWV NSQGKRVGYDVRLARRVAKDLGVKPKFIQVNANNRIDTLNSNKADIVLANFTLTPERKSV ASWTKPYMKVSVGVISPKSAPVTNAKQLKGKSVIVTKGTTAENYFTKQKGVNLLKFDSKT QQFNAIKNGRGAALADDNSYLYAWVKRNPKFTVGIKTIGPNQYISGAVKKGNKSLQKWMD REITKLNRESFFTYDYNKELKPYFGKEIRPSDIVLPQGK >gi|227862640|gb|ACKR01000064.1| GENE 16 17007 - 17747 236 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 21 231 147 355 398 95 34 3e-19 MTEEVLRVEHLNKFYGKHQTLFDINFSLNKGEVLTLLGPSGSGKSTLLRTLNGLEEYEDG AIYFHGKKINPSPKEWQLLRQKIGMVFQSYDLFPNLTVMENILLAPVKVQKRDEDEVKEE AVKLLKQVGLSEYGDAYPRELSGGQKQRVAIVRALVMHPEVMLFDEITASLDPEMVRGVL DIMQRLSDDEHITMIIVTHEMNFAARIADKVLFLEDGKILEDTPGKEFFAKPKTKRAQEF LESMDF >gi|227862640|gb|ACKR01000064.1| GENE 17 17757 - 18428 692 223 aa, chain - ## HITS:1 COG:SP0710 KEGG:ns NR:ns ## COG: SP0710 COG0765 # Protein_GI_number: 15900608 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 219 1 219 225 191 47.0 8e-49 MLHSGINVLFEGSNFARLMAGLWTSIWIAALSLIIGLAVGTIFGILRTLKNRPIRFVLRL YLEFFRIVPTVVLLYLVYYILPRSLHVNWPATWMAVLAFSMWVAAEFSDIVRGALESVPK TQRESGLALGLNRLQLFRYVLLPQAVKLELPATINLATRVIKTTSLLMIINIMEVINVGQ QIIEANNQQYPAGVFWVYGFIFILYFILDYPLSAWAKRLTAKN >gi|227862640|gb|ACKR01000064.1| GENE 18 18409 - 19086 637 225 aa, chain - ## HITS:1 COG:SP0711 KEGG:ns NR:ns ## COG: SP0711 COG0765 # Protein_GI_number: 15900609 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 29 225 3 199 206 190 49.0 2e-48 MIGGFLMNWTVIQQALPIFARGFELTLWLSLIGIVGSIIVGIIVSLVQYFKLPVLSQIST AYVELARNTPLLIQLFFLYYAFPVIGLKMSAEVCGIIGLIFLGGAYMAEGFTGGFNGVNP SQISSGKALGMNNFQLARYVVFPQGFSLSMPALTANIIFLIKETSIFSVIAIPELTNTAL DLIGMYYRSNEYLLMLVVAYAIILIPVILLLTWLEKRVRYASFGD >gi|227862640|gb|ACKR01000064.1| GENE 19 19371 - 19721 457 116 aa, chain - ## HITS:1 COG:CAC0849 KEGG:ns NR:ns ## COG: CAC0849 COG1733 # Protein_GI_number: 15894136 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 16 115 2 101 102 86 45.0 1e-17 MQEVKEKKDAAPCKPEDYELCGHFVSAFKIIGKKWNGLIISSLCDTQDMRFKDLARTVEA CSDRVLVERLKELEKDDIVKRSVDQSTGIISYGLTEKGAELKPVFDQVHNWADKWA >gi|227862640|gb|ACKR01000064.1| GENE 20 19829 - 20596 164 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 113 252 101 240 255 67 29 7e-11 MQQISSVNNATIKKLAKLKQKKYRDDEGLYLIEGFHLFEEALKAGKKYQYILGTEEALDQ ADSEYEVNLSGKNVVLINKAIARHLSSTKNSQEIFMVLKIDQPKEFPFNYGKWVLLDNLA DPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLADVITDFQ DAAIPVYASLLDRSAKQLPDFEKVPQLALIIGNEAHGISKTIASLADEKLYIPIKGQAES LNAAVAAGIMIYHFA >gi|227862640|gb|ACKR01000064.1| GENE 21 20696 - 20968 352 90 aa, chain + ## HITS:1 COG:CAC2830 KEGG:ns NR:ns ## COG: CAC2830 COG1254 # Protein_GI_number: 15896085 # Func_class: C Energy production and conversion # Function: Acylphosphatases # Organism: Clostridium acetobutylicum # 1 90 2 91 91 57 31.0 5e-09 METRKLICSGLVQGVGFRWSTMALANKMGIPGTVKNNANGTVTIYLQADNDKIDRFIEKL PTASGFAQIQNISQESVPGVEKMHDFHVLY >gi|227862640|gb|ACKR01000064.1| GENE 22 21012 - 21977 899 321 aa, chain + ## HITS:1 COG:L164312 KEGG:ns NR:ns ## COG: L164312 COG0706 # Protein_GI_number: 15672551 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Lactococcus lactis # 14 321 1 307 307 152 33.0 7e-37 MKKIKRYAGVLALLAVATLVLSACGATTDPHVAPHSGIYGWVYQWLGRPLQNIMIQTAHM IGGDNGAGWGIVIITVVVRVILMPLMLVQQNKSVRQQEKMARLQPQMKLIQNAMRHKGIT PDQQMTLSTWQRELYSKNQVSLTGGMGCLPLIIQLPIMWGIYQAVFYSPQLAQSKFFGIS LSSKSVVLAIIATVFTVIQGYISLIGIPEEQKKTMQSMMIVNPIMTLFFSLSFSGALALY WAAGNLVMIVQQVIVTFVLTPSVKKHIADELKDKPIETVVTKEKVDALFNSNSGQSKATT EAKKELHQDLRNRNKGKQKRK >gi|227862640|gb|ACKR01000064.1| GENE 23 22024 - 22512 489 162 aa, chain + ## HITS:1 COG:L89201 KEGG:ns NR:ns ## COG: L89201 COG3760 # Protein_GI_number: 15674012 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 5 158 6 159 163 93 32.0 2e-19 MHTQEILQLLDDHDISYQVFSHPAVYTTKEADKYLKNEDFTKCKTLFIKSRNGKNYYLLI LPENKKVDWKKAQSELLSPSLTFASEDELEEKLKVKSGTVSPFNLLNDSSNTIPLIVDQA AMEENNYVGVHPNDNTKTISLTWTDLARILSSYGHLFEERSL >gi|227862640|gb|ACKR01000064.1| GENE 24 22720 - 23901 1401 393 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01496 NR:ns ## KEGG: LCRIS_01496 # Name: not_defined # Def: S-layer protein # Organism: L.crispatus # Pathway: not_defined # 1 393 1 393 393 695 99.0 0 MKLKRIVLSIVAGTALLVPAALAGQNQLTPVVRASTLKNKITTVKSYTNPTLYNKNGKEL GSQDRINFKKPISFYGQPIVIQGPRVNAFINLNGMPQAIVNGETYADLGDGGYVNMKSVG SYNWNNNEIGIIKNTYIYNSKGNRLSTYRGGKAYLTKGSKIKYAGKSWTTYPDSYFNLGD GTYLKSNNVNTMNGKGVLKLNANTAIYNKNGKRISFNGQQVFPKYSIINYAGKRRTKTQT DDYYYTNLSGSKSYAIKNYKIKGQDYYYIGRGAYIKAMNVGRINGNPVFRDGGATTIVPQ TDLYIYNSKLKKTKQSVKKGQKIRALDPVVLGSGDIAQLFYRIKGTSNYVSWGDYSEYGF EDDEHVGYFNFRVRLNPVKTIENAATRAAEESD >gi|227862640|gb|ACKR01000064.1| GENE 25 23970 - 24788 635 272 aa, chain - ## HITS:1 COG:no KEGG:LJ1642 NR:ns ## KEGG: LJ1642 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 11 266 126 407 413 302 57.0 7e-81 MLVPIAVVHVGPIKNWFLRLLTIYFLDIQYGDAQNLAINPDFCWLHSLTYQGVIAAIALL TMTCFLVKAWGYHFNPNLKFIKSSSFQKKILLALLIMATIDLFYNIPNLTAAIEPGILEE TERYLLIVIFLAGFNRFPKYRIPVAIYGSAILFGLSHLSNFGWHGESFTATIAQVIGVMG SAFIWAELYLYTGKLWLPMIYHFLMDYISDLQSGWNSAGWSWNGEITDYIYTVLIVGVPL LFSIWMLFGKRRQVMEDNADLILDLNGRQSMI >gi|227862640|gb|ACKR01000064.1| GENE 26 24848 - 25054 118 68 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01498 NR:ns ## KEGG: LCRIS_01498 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 19 57 1 39 64 66 97.0 4e-10 MISYTFSQRNNHFYFIGDLFNLAFSTAIMGLNFYVQFKKDSSKTNTQIVRWLTIVIFAKF GISLGISC Prediction of potential genes in microbial genomes Time: Wed May 25 06:24:05 2011 Seq name: gi|227862623|gb|ACKR01000065.1| Lactobacillus crispatus JV-V01 contig00067, whole genome shotgun sequence Length of sequence - 13447 bp Number of predicted genes - 16, with homology - 16 Number of transcription units - 7, operones - 3 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 41 - 92 5.3 1 1 Op 1 40/0.000 - CDS 99 - 1667 1525 ## COG0642 Signal transduction histidine kinase 2 1 Op 2 1/0.000 - CDS 1654 - 2370 956 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 2414 - 2473 8.1 - Term 2471 - 2514 7.6 3 2 Op 1 . - CDS 2539 - 3102 570 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein 4 2 Op 2 . - CDS 3105 - 4256 958 ## COG1323 Predicted nucleotidyltransferase 5 2 Op 3 6/0.000 - CDS 4260 - 4607 386 ## COG0799 Uncharacterized homolog of plant Iojap protein 6 2 Op 4 9/0.000 - CDS 4625 - 5143 615 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 7 2 Op 5 1/0.000 - CDS 5199 - 5852 670 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 8 2 Op 6 6/0.000 - CDS 5863 - 6972 1005 ## COG1161 Predicted GTPases 9 2 Op 7 . - CDS 6965 - 7489 356 ## COG2179 Predicted hydrolase of the HAD superfamily - Prom 7594 - 7653 3.1 10 3 Tu 1 . - CDS 7680 - 8831 849 ## COG0675 Transposase and inactivated derivatives - Prom 9059 - 9118 5.2 + Prom 8929 - 8988 5.1 11 4 Tu 1 . + CDS 9050 - 10114 530 ## COG1816 Adenosine deaminase + Term 10116 - 10171 12.2 - Term 10108 - 10153 10.0 12 5 Op 1 46/0.000 - CDS 10162 - 10518 595 ## PROTEIN SUPPORTED gi|227877776|ref|ZP_03995809.1| 50S ribosomal protein L20 13 5 Op 2 36/0.000 - CDS 10563 - 10763 347 ## PROTEIN SUPPORTED gi|227877777|ref|ZP_03995810.1| 50S ribosomal protein L35 14 5 Op 3 . - CDS 10785 - 11300 390 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 - Prom 11364 - 11423 7.2 - Term 11345 - 11382 4.5 15 6 Tu 1 . - CDS 11526 - 12443 726 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 12597 - 12656 10.4 + Prom 12509 - 12568 9.2 16 7 Tu 1 . + CDS 12638 - 13445 532 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I Predicted protein(s) >gi|227862623|gb|ACKR01000065.1| GENE 1 99 - 1667 1525 522 aa, chain - ## HITS:1 COG:lin1415 KEGG:ns NR:ns ## COG: lin1415 COG0642 # Protein_GI_number: 16800483 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 159 501 141 481 483 281 43.0 2e-75 MIKNKDEEKEAKHSSLIVRWVSIVALTITVSFVIFSVVAYQIVSHQSMEQQQETSNNVVT TMDRTLSSIQDELEISNVIPALSPSTRRILRGGPAISKKDTENKAFSDSLISSISNPDIN VAVYNKHDEIVFTNGNSAPKLKEFAGNQLEEVVNRKKGKMLLTYQKIYSEVNGKLTGYVV VSNSMTYYNSLMSNLLHWMVIISLIAIIIFIAISYILVVNVVRPIKTMSKVAKEVNADPN SEARIKELHRDDELEELATSINQMLDRMQGYIEQQKQFVGDVSHELRTPVAVIEGHLNLL ERWGKDDPQILDESIKASLQEADRMKHLIQEMLDLTRAEQIDVQYPYEVSDVNEIIRRVV ADMAMVHPDFKIQLDEDDLPDDTEIQMYHGHLEQLLVILIDNGIKYSTDRKQINVSAGVT KKNVNIIVQDFGEGISEEDQKKIFNRFYRVDKARTREKGGNGLGLSIAQKLVASYNGTIS VESVEGQGSQFKLKFPRLTKKKAAKLRKLNEKKQMPKSNLEA >gi|227862623|gb|ACKR01000065.1| GENE 2 1654 - 2370 956 238 aa, chain - ## HITS:1 COG:lin1414 KEGG:ns NR:ns ## COG: lin1414 COG0745 # Protein_GI_number: 16800482 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 231 1 225 226 267 69.0 1e-71 MAKILIIEDEKNLSRFVELELQHENYETVVENNGRKGLEDALSQDFDAILLDLMLPDLNG LEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVK IEKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVS RDQLLNKIWGPESNIETNVVEVYVRYLRNKIDAPGQPSYIKTVRGTGYMVRDEDDDQE >gi|227862623|gb|ACKR01000065.1| GENE 3 2539 - 3102 570 187 aa, chain - ## HITS:1 COG:SP1280 KEGG:ns NR:ns ## COG: SP1280 COG1399 # Protein_GI_number: 15901140 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Streptococcus pneumoniae TIGR4 # 2 179 1 180 180 80 29.0 2e-15 MLELSFSRIQNSKEPLTHIERDLEMRPEFFKRSKDLLIDAKNVKVSGDLFYQEPFVTGSF HVAADLVVPSSRSLKPVNYHEDFTFTENYLDRKPTKEELEENDTIVQVENDQIDLQTAVE DNILLHIPTTILTPEEKEKNIFPEGQGWEVVSETSFEEGKKNQVNPAFAKLKVLLDGQDN DKDNKNK >gi|227862623|gb|ACKR01000065.1| GENE 4 3105 - 4256 958 383 aa, chain - ## HITS:1 COG:SP1742 KEGG:ns NR:ns ## COG: SP1742 COG1323 # Protein_GI_number: 15901574 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 383 1 362 365 206 34.0 8e-53 MSVVGIIAEFNPFHSGHEFLLNQARLVAGNDPIVVLMSGNYVQRGEMAIMSKWERAKVAL QSGADLVFETPFSTAVEPADLFALGNIEQLAKLGVTDLVFGVEDANLNFAYLGKRIAEIP QNHMDFRDYSQTYSTQYNQMVAHEVGYEVNQPNAILGLAYSVANHNLGSPLNLHPVNRIG AGHDDLLQREKVVQSASAIRNLLLHGEDTKNLKYWMPKAEAMVLAEQKIYPNWNLLYPFL KYRIESSSVEELRHIYQMSEGLEYKMKQEIHLARDFTEFLRHIKSKRYTYSRLRRLSLYT LLNVTQDDILASFNHESLMLLGFSKVGRKYLKQQRKEFQTEIVSKVDKRSAKNGSLALQV RVDRLFEQIMGVDQNFGRRPIEV >gi|227862623|gb|ACKR01000065.1| GENE 5 4260 - 4607 386 115 aa, chain - ## HITS:1 COG:BH1328 KEGG:ns NR:ns ## COG: BH1328 COG0799 # Protein_GI_number: 15613891 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Bacillus halodurans # 1 113 1 113 117 100 41.0 9e-22 MTSQEILDFTTQAISDRHGEDTEAYDMRGISILADYYVITSAGSNRQLHAIVNSIVDAAH ENNYTDYRIEGTRDSNWLLLDLGDVVVNVFTKEAREFYNLEKLWANGKQVELKED >gi|227862623|gb|ACKR01000065.1| GENE 6 4625 - 5143 615 172 aa, chain - ## HITS:1 COG:SP1746 KEGG:ns NR:ns ## COG: SP1746 COG1713 # Protein_GI_number: 15901578 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Streptococcus pneumoniae TIGR4 # 1 169 22 190 197 167 47.0 9e-42 MKKKRFEHCVRVSETARKLAKLNGYDEEKAALAGFVHDYAKQVPVEEYRKVIKEQDFDPD LLNWNRAIWHGIVGIFFIERDLKIRDPEILTAVRRHTTGDTKMTTLDKIIFVADFIEPGR DFPGVEEARKVAYASLDEGVGYELQHTLEFLIENKNKVYPRTLEAYNVWGIK >gi|227862623|gb|ACKR01000065.1| GENE 7 5199 - 5852 670 217 aa, chain - ## HITS:1 COG:SPy0308 KEGG:ns NR:ns ## COG: SPy0308 COG1057 # Protein_GI_number: 15674475 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Streptococcus pyogenes M1 GAS # 27 211 24 209 210 166 45.0 2e-41 MVNPKCIEKMPTAKVEAELEQEQGKGRQIGIMGGTFNPVHIAHLVAAEQAMTKLKLDEVW FIPDNIPPHKNAPLTSAKDRATMLDLATRDNPNFRVKLLELFRGGVSYTVDTMRYLKEKA PQNDYYLIMGSDQVNSFHTWKEAPTLAKLVTLVGIRRPGYPQDPQYPMIWVDAPDIRLSS TAIRRSVATGTSIRYLVPEAVREYIEEKGLYLDETNF >gi|227862623|gb|ACKR01000065.1| GENE 8 5863 - 6972 1005 369 aa, chain - ## HITS:1 COG:SPy0306 KEGG:ns NR:ns ## COG: SPy0306 COG1161 # Protein_GI_number: 15674473 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 3 369 2 372 372 374 48.0 1e-103 MDEDIICIGCGAKLQSDDPEKAGYLPKSALDKAKQEENADVYCQRCFRLRHYNEIMPVDL NNDDFLALLNSLGQKKALIVNVVDLFDFSNSLLSSLKRFVGNNDFILVGNKFDLFPKNSK QSKIKDWMRQEANRMGLYPKEIFLVSAKKKLNLEDLIAYINKQSQDKDVYFVGTTNVGKS TLINAIIDMMGDIQDLITASRFPGTTLDKIEIPLENGHFLIDTPGIMTENQLATHLNAKD LELVSPKKPLKPATYQLLPGNTLFLAGLGRIDYLKGESTSFTVYVARGMYIHRTKTANAD DFYKKHKGELLSPPAADDEMAPLKGQEFRTEYKSDLLFGGIGFVTVPKGCVVKTYTPDGI GLGIRRALI >gi|227862623|gb|ACKR01000065.1| GENE 9 6965 - 7489 356 174 aa, chain - ## HITS:1 COG:SPy0305 KEGG:ns NR:ns ## COG: SPy0305 COG2179 # Protein_GI_number: 15674472 # Func_class: R General function prediction only # Function: Predicted hydrolase of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 3 153 25 175 194 130 41.0 1e-30 MLFRPKYTIDTIYNLDPQKLNEMDIKAVFSDLDNTLLAWNKFETAKEMDNFNQKLAKAGI TLVVISNNNAQRVGKVLDPYHIEFVAKSRKPLPFAITKKREAMHLQKDQVMMVGDQLITD MQAGNLAGVKTVLVKPLVETDKWNTRINRFFEKIIFFFLGLSHRVTFKKELSNG >gi|227862623|gb|ACKR01000065.1| GENE 10 7680 - 8831 849 383 aa, chain - ## HITS:1 COG:all7245 KEGG:ns NR:ns ## COG: all7245 COG0675 # Protein_GI_number: 17233261 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Nostoc sp. PCC 7120 # 1 380 1 365 407 127 26.0 3e-29 MIKAQVVELKPNKTMQQELDKLCDYRRYCWNQALATWQDMYEARTLDKDNNPSPNERRIR DELVDNKADWQFALSARCLQLAVKDLANAWKNFFDKAQPDFGKPHFKSKKAPRQGFKTDR AKVVNGKLRLDKPRGIKTWFDIPTYEALKMKQIKVASVFRERGHYYAALSYEEETLVKPR TGRKTAVDVNVGHFNYTGGKINVLPSRLQKLYKRIKHYQRMLAKKRRANGKLAGQSNNYV QVRTKLQRDYRKVANIQNDLLQKFTTKLVNNYDQIVIEDLAVKQMMMTHVASKGMQRSLF SKFRQILTYKCEWYGKELILADKTYPSTPRCANCGYVKKGDEKITLQGNQKHHTKHNEYV CYECGYTNDRDDNAVLNLLALAK >gi|227862623|gb|ACKR01000065.1| GENE 11 9050 - 10114 530 354 aa, chain + ## HITS:1 COG:CAC3005 KEGG:ns NR:ns ## COG: CAC3005 COG1816 # Protein_GI_number: 15896257 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Clostridium acetobutylicum # 18 348 5 329 334 179 34.0 1e-44 MKKCYNTKQFKQNHQSTERITMRKFIDLHLHLDGSVPVATVKKLMQEHHMPQLTDQKLRQ ELSVDNSCASLEQFLEKFDLPNQLMKTKHDLEMIVFDLLCELKQQGLVYAEIRFAPQLHT KNGLTQRQVIAAAVSGITKFYQKQKADKDQPELHAGLILCLMRFAHNEKENMETVELAKE FLGHGVVGLDLAGAEGPIPNINYQHFFNRAQELHLPYTIHAGEAAGPDSIRQALKIGAKR IGHGIRCTEDPALTQYLIDHQIILECCATSNMNTKAFDQIDSYPIKKLLHMGMKVTLNSD DMIVSNTNLPHEYQLLEEKTALTPEEETTLYLNAVDAAFTTPDEKIRLRALIQK >gi|227862623|gb|ACKR01000065.1| GENE 12 10162 - 10518 595 118 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227877776|ref|ZP_03995809.1| 50S ribosomal protein L20 [Lactobacillus crispatus JV-V01] # 1 118 1 118 118 233 100 4e-61 MPRVKGGTVTRQRRKKIMKLAKGYRGAKHMQFKAASTQLFVSYKYAFRDRRRRKSEFRKL WIARINAAARQNDISYSKLMHGLKLAGVDMNRKMLADIAYNDSKTFAQLAETAKKALN >gi|227862623|gb|ACKR01000065.1| GENE 13 10563 - 10763 347 66 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227877777|ref|ZP_03995810.1| 50S ribosomal protein L35 [Lactobacillus crispatus JV-V01] # 1 66 1 66 66 138 100 2e-32 MPKMKTHRASAKRFKRTANGGLKRHHAFTGHRFHGKTKKQRRHLRKAAMVSKSDMKRIKQ MVAQMH >gi|227862623|gb|ACKR01000065.1| GENE 14 10785 - 11300 390 171 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 1 163 1 164 166 154 47 2e-37 LNDRIRAREVRLIDEDGQQVGVMSKSDALRRASDAGLDLALISPNAKPPVARIMDYGKYR FEQQKKLKEARKNSKTVSVKEIRLSPTIEGNDFETKLKHVRKFISKEGAKVRVSIRFRGR AITHKELGQQVLEKMAEVTSDIANVISKPKMEGRSMFLMLAPKSDKDKKKK >gi|227862623|gb|ACKR01000065.1| GENE 15 11526 - 12443 726 305 aa, chain - ## HITS:1 COG:STM0051 KEGG:ns NR:ns ## COG: STM0051 COG1957 # Protein_GI_number: 16763441 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Salmonella typhimurium LT2 # 5 302 7 303 306 218 37.0 1e-56 MKKPVIISTDPGIDDAVALAICLFSPAIEVKSIIATNGNVNAQQALINILKLEKFFGKSI PVVKGVERSLVKQSIRAKEIHGKSGMDGYDFPNPSFELVDHGISPVAIHKIVAASSEKVT LIGIAPLTDYALYVRLYPDDIKNIKELIIMGGAMGRGNYGIYSEFNIASDPEAAKIIFES GLKIRVAPLELGAQAKIMPEVSNQIRQLGKAGDMFYDLFKKFRGGSFQTGLKIYDALAAG VLLNPQMFKFKNTHVEIDVQTGYTYGASLMDFKNKLDLPNNAEIAVSVDPEIFSKWFVEA LSKTR >gi|227862623|gb|ACKR01000065.1| GENE 16 12638 - 13445 532 269 aa, chain + ## HITS:1 COG:AGl889 KEGG:ns NR:ns ## COG: AGl889 COG1176 # Protein_GI_number: 15890561 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 24 268 77 322 326 149 35.0 5e-36 MKIKSSFWLLFPAFISVLIFAFFPLIQIAIPTFQDSKGFLHLYTEFLKNTYNLHVIGRTF KIALLTMIIVLILGIPISLWIARQKSKVRSILTIIILFPMLTNAVVRNFAWIIILGRNGI LNKFLMSIHLINSPLNILYTDTAIIIGSAYLFLPIMIISLVGSISELNIEAEEAAAVLGA NPWVNLIKIVIPQLVSGILTGCILVFAGAMTAYTTPQILGGNKNLVMSTLIYQQAMTLGN WKNASVIAIVLIIISALSMILMRKASRAL Prediction of potential genes in microbial genomes Time: Wed May 25 06:24:07 2011 Seq name: gi|227862614|gb|ACKR01000066.1| Lactobacillus crispatus JV-V01 contig00068, whole genome shotgun sequence Length of sequence - 7234 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 4, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 8/0.000 + CDS 21 - 818 483 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 2 1 Op 2 13/0.000 + CDS 820 - 1860 720 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 3 1 Op 3 . + CDS 1885 - 2946 1177 ## COG0687 Spermidine/putrescine-binding periplasmic protein + Term 2964 - 3006 10.5 4 2 Tu 1 . + CDS 3015 - 4718 1572 ## COG1001 Adenine deaminase 5 3 Tu 1 . + CDS 5606 - 5902 180 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase - Term 6493 - 6523 1.3 6 4 Tu 1 . - CDS 6681 - 7217 347 ## LCRIS_01519 ABC-type polysaccharide/polyol phosphate export system, permease component Predicted protein(s) >gi|227862614|gb|ACKR01000066.1| GENE 1 21 - 818 483 265 aa, chain + ## HITS:1 COG:AGl888 KEGG:ns NR:ns ## COG: AGl888 COG1177 # Protein_GI_number: 15890560 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 14 259 12 257 259 160 35.0 3e-39 MLNRKNKTLAIISIIILILLMFPLLLVIITSFNNQDSISLPIKGFTLSWYANIFQQPDFI SGFESSLFVAIIASLSALIIGIPAVYALTRFNIVHKSWFHSFFLSPTLIPEIVIGFALYQ AAVVTLRLPVMPSLIIGHFLLCLPYVIRLVTASMLLMDKNIEEAAWVCGCSPQKGFFLIV LPNIKASIVAAFMMCFINSFNNIPISLFMNGPSITMLPPAILNYLQNNYDPTVSAISVVL MIFTALIMLLTEKLVGLNKLTDRNN >gi|227862614|gb|ACKR01000066.1| GENE 2 820 - 1860 720 346 aa, chain + ## HITS:1 COG:SMb21276 KEGG:ns NR:ns ## COG: SMb21276 COG3842 # Protein_GI_number: 16264528 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Sinorhizobium meliloti # 2 346 5 340 342 277 41.0 2e-74 MAILEVKDLAKSYNGKTKVLKDISFSVKNGDLVSILGPSGCGKTTTLRIIAGLIPATDGQ VLVDGEDVGKVPVYKRNFGMVFQSYALFPHMTVFNNVAFGLKMKKMSKSDIQKRVDQILK ITGLSKLASRYPKELSGGQQQRVSLARALVVNPQLLLMDEPLSNLDAKLRIKMRSEIREL QQKLKMTVLFVTHDQRECFAISDKVLIMKDGKIDQYDTPENIFHHPSSEYVARFIGYDNF INVDEIINDRQIKSKDLVFLTDENNIQAKVLTIRPENILINSEENPSNNLIDGTITSLEY LGQSFKYKVSTSLGDFTVEESRKSMRSSGDKVQLYLPSKHLHPLSR >gi|227862614|gb|ACKR01000066.1| GENE 3 1885 - 2946 1177 353 aa, chain + ## HITS:1 COG:SMb21273 KEGG:ns NR:ns ## COG: SMb21273 COG0687 # Protein_GI_number: 16264525 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Sinorhizobium meliloti # 4 348 2 335 340 150 29.0 4e-36 MNFKKVGLLAASFLLVGSVAFGTTACSSQSSSNGGNLTVSTFGLSTKQMRNDVLNPFAKQ SSVKVKTQFGDSATRLTQIEHNPNTGVDVIELAQNNAVTGDKKKLFKKLDFSKISNFKYL SKSEQKLAKETNTVPYTVNSLGIIYNPKKVNINSWKDLWSSKLKNKIAVPDMTTTFGPAM LYIAGDYAGTSVTKDNGNAAFKAMKELKPNVVKTYTQSSDLSNMFKSGEIEAAVVGDYAV GMLQATNPNLKYIVPKSGTYANYDNVSILKNSKNSAAAYKYINFRLSEKIQKKVAGLKSL NNAPVNTQVKLTPAEAANKTYGSVAKRAKTINFFFVNSHMSNWISRWNKIMNK >gi|227862614|gb|ACKR01000066.1| GENE 4 3015 - 4718 1572 567 aa, chain + ## HITS:1 COG:BH0640 KEGG:ns NR:ns ## COG: BH0640 COG1001 # Protein_GI_number: 15613203 # Func_class: F Nucleotide transport and metabolism # Function: Adenine deaminase # Organism: Bacillus halodurans # 3 558 17 571 585 258 31.0 3e-68 MTEVDLIIKNAHVFNVYLRKFQDVQVSIKNGKFYWINKELPNLKAKKVIDLQGKYLIPGF VDAHMHIDSSMTTPKIMGETILKYGTTTIIADDHEVTNVAGINGLKDFINEDSPIDIFFG IPSSVPSTNPQMETTGGKIGVPEVKELLKDPRFICLGEVMNFKDMTSDKDTLIKDIINTC HKTKPTMPIEGHTPAYHGEDLAKILYAGVTTDHTQQTRDLVNEKIRNGMFVEVQLKSMHP DVINTIIDNKYFEHVALVTDDSMPDTLLKGHLNLLVKKAINMGMKPEDAIYISTYIPARH MGLWDRGAIAPGRVADFSILDNLEELSIADVYKNGISAKETIKNTSQDDFSPNSLTTSVK APKLTKQDLLLKTNLVDNGSVTANVIQINPVGTFTNHIQKRLAVHNHIVDWQSANLALII VQERYGLNDGKFSLGLVDRGIIGDGAVGATWAHDHHNLMVMGTNIDGMIDIQHQLINQQG GYIVARGEKIAANAPLPIGGVVSNQPMKILGEQIGNIRKNLVELGYKNTNEIMSFSTLSL LVSPSLKISDKGLFEVKSQKKVPLFEK >gi|227862614|gb|ACKR01000066.1| GENE 5 5606 - 5902 180 98 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 85 232 312 317 73 45 2e-37 TITTDNGSEFADLSNLEKVSNTLVYYAHPYTSCDKGTVERHNGLIRRFIPKGDYINNYSL QEIIDIETWCNSLPRKLLAYHTPDEIFERELDKIYQAA >gi|227862614|gb|ACKR01000066.1| GENE 6 6681 - 7217 347 178 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01519 NR:ns ## KEGG: LCRIS_01519 # Name: not_defined # Def: ABC-type polysaccharide/polyol phosphate export system, permease component # Organism: L.crispatus # Pathway: not_defined # 5 178 81 254 254 198 64.0 9e-50 MNNAKSGILEQQYLMPISSRRLFLNKSIANIVVAFVQAILILIAVMAISDHWISFPVIMI VPFILALLTTVGLGYLIVSLVLRFKRIGSTLVIFQYIYLGILLVNFENYSNLTKCLSCLL PICPMVSWMRLAVNNRPYNLAFYLSESIFNTVLWLIIGLLVFNLADKYVKKNGTLSFY Prediction of potential genes in microbial genomes Time: Wed May 25 06:24:12 2011 Seq name: gi|227862606|gb|ACKR01000067.1| Lactobacillus crispatus JV-V01 contig00069, whole genome shotgun sequence Length of sequence - 2955 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 3, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 219 179 ## LCRIS_01519 ABC-type polysaccharide/polyol phosphate export system, permease component 2 1 Op 2 . - CDS 216 - 1142 367 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 3 1 Op 3 . - CDS 1179 - 1616 334 ## LCRIS_01521 hypothetical protein 4 1 Op 4 . - CDS 1613 - 2053 360 ## COG3279 Response regulator of the LytR/AlgR family - Prom 2090 - 2149 4.7 - Term 2146 - 2189 6.3 5 2 Tu 1 . - CDS 2213 - 2440 245 ## gi|256843641|ref|ZP_05549129.1| predicted protein - Prom 2461 - 2520 7.5 - Term 2596 - 2643 7.5 6 3 Tu 1 . - CDS 2699 - 2818 108 ## gi|227877796|ref|ZP_03995827.1| hypothetical protein HMPREF0506_0828 - Prom 2882 - 2941 4.3 Predicted protein(s) >gi|227862606|gb|ACKR01000067.1| GENE 1 3 - 219 179 72 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01519 NR:ns ## KEGG: LCRIS_01519 # Name: not_defined # Def: ABC-type polysaccharide/polyol phosphate export system, permease component # Organism: L.crispatus # Pathway: not_defined # 1 72 1 72 254 76 76.0 3e-13 MISFKAEFWRQFYLYKRYLFNYISEFFLLILMFMAIFWGGSLVGGGVLGKSLNALVVGYV LWSLIENTISQM >gi|227862606|gb|ACKR01000067.1| GENE 2 216 - 1142 367 308 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 4 300 12 304 312 145 33 3e-35 MTLLSVNNISKTYQKAHKKAVSDVSFNVDSGDIVAFLGPNGAGKTTTLKMILNLVSPDKG TVVFDGKDVTHNNLFLLKNTGVLLEGSRNMYWALSPMENFVYWGGQRGLSKKEAEKRGET FLKQFGLLDKKYTSITRLSRGMQQVVGICCAMIAEPKLLILDEPTLGLDLNATQIMIKSL NMLSANGVGILVTTHQMEFAQEIANKILLINHGKLVFSNSIKDSLKKLNKQEIFEVHFTQ ELTASEKEDILASCELTKKTDGVYRLGVKPQASLSQVLKLLSELPISSIQTVTRGLDEIF KYYTEKEK >gi|227862606|gb|ACKR01000067.1| GENE 3 1179 - 1616 334 145 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01521 NR:ns ## KEGG: LCRIS_01521 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 12 144 8 140 143 130 57.0 1e-29 MKNIKDLLYNGLISGLIGIGIGTIWMAMDFLFSLNGQNPATAKIYLKTFLFWTIISFLIG IFFYLASWIFNSEKWSLKKQIFINFFVCFVAWFLLNLLIDNFSISLKMVIRVTVDFIIMY AIAYGGYFLHLWNTVRRINAKLKEK >gi|227862606|gb|ACKR01000067.1| GENE 4 1613 - 2053 360 146 aa, chain - ## HITS:1 COG:SA2153 KEGG:ns NR:ns ## COG: SA2153 COG3279 # Protein_GI_number: 15927943 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Staphylococcus aureus N315 # 3 146 2 147 147 65 30.0 3e-11 MQLKVKLNIDPSLPEEKAEFWLKKMTARFERITKELNSEQDFLWCYLDGDAYEINFSQIY AIQIENEKTMICTQNQKYVYRGRLYQVQSVLPNDFIMISRGAIVNYHFIDHLEIINTGNI DALLENGLRVQVSRRRIKDLKERLGL >gi|227862606|gb|ACKR01000067.1| GENE 5 2213 - 2440 245 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843641|ref|ZP_05549129.1| ## NR: gi|256843641|ref|ZP_05549129.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 75 6 80 80 109 100.0 6e-23 MKKRFKLAAIFVAAMFAAAPVVGMAETSTTVSADADIMQQYTFNDSVLDFTPTLKVYIAK GHKFTTSKETAYKAK >gi|227862606|gb|ACKR01000067.1| GENE 6 2699 - 2818 108 39 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227877796|ref|ZP_03995827.1| ## NR: gi|227877796|ref|ZP_03995827.1| hypothetical protein HMPREF0506_0828 [Lactobacillus crispatus JV-V01] # 1 39 1 39 39 62 100.0 7e-09 MLDVLNNKVELSNVHFAEHKLAIEDAKTMLENEGWIATK Prediction of potential genes in microbial genomes Time: Wed May 25 06:24:25 2011 Seq name: gi|227862603|gb|ACKR01000068.1| Lactobacillus crispatus JV-V01 contig00070, whole genome shotgun sequence Length of sequence - 620 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 65 - 403 244 ## COG3328 Transposase and inactivated derivatives Predicted protein(s) >gi|227862603|gb|ACKR01000068.1| GENE 1 65 - 403 244 112 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 2 111 85 194 391 117 50.0 4e-27 MFHQHTLPDYRQHSDVLESMIIKLYSKGVTTREIADLIEKMYGSHYSPAQVSNISKQMIP KVEAYHQRKLSDKFFCIYLDATYITLRRITFDREAVYIAIGIKPNGHKEVID Prediction of potential genes in microbial genomes Time: Wed May 25 06:24:26 2011 Seq name: gi|227862601|gb|ACKR01000069.1| Lactobacillus crispatus JV-V01 contig00071, whole genome shotgun sequence Length of sequence - 1372 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 4 - 1263 893 ## COG1808 Predicted membrane protein - Prom 1311 - 1370 7.1 Predicted protein(s) >gi|227862601|gb|ACKR01000069.1| GENE 1 4 - 1263 893 419 aa, chain - ## HITS:1 COG:SP1264 KEGG:ns NR:ns ## COG: SP1264 COG1808 # Protein_GI_number: 15901124 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 7 325 5 318 347 270 44.0 4e-72 MIIRQRKNYLTSQFLSKISADGTLNIENLIVLTCAIFIASIGLNVNSTATIIGAMLISPL MGPLLAIGTGLALYDVHLLRKGTISLLAEIIISLAASTIYFHFSPLTYASQEIIARTSPT IWDAMIAFFGGVAGIIGARKKEANNIVPGVAIATALMPPACTIGYSIAAGNLKYFLGSSY LFLINCVFIILTAFMGVKIMKWLSYSTKQSKLFFLHKPTFKEFVIILVVIILIIPSILSA NQMVNKTLVDQNVQNLVVNELGNVNLIKENVDTQGKIINLTVSGDKINAKKIQAAKANLT KYDLKGYSLNIVQVAQVNPNAENQLDRQVNNIINQRQHEQEQADEKRQQEQEKRNQKIRK LSSAISSVTAVSDNKNKQITLIELKKPLSKKRKNALVRQIKDKYPNINLVEFVQENIKN Prediction of potential genes in microbial genomes Time: Wed May 25 06:24:26 2011 Seq name: gi|227862600|gb|ACKR01000070.1| Lactobacillus crispatus JV-V01 contig00072, whole genome shotgun sequence Length of sequence - 231 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:24:27 2011 Seq name: gi|227862598|gb|ACKR01000071.1| Lactobacillus crispatus JV-V01 contig00073, whole genome shotgun sequence Length of sequence - 1744 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 154 - 1392 996 ## COG3547 Transposase and inactivated derivatives - Prom 1456 - 1515 3.9 Predicted protein(s) >gi|227862598|gb|ACKR01000071.1| GENE 1 154 - 1392 996 412 aa, chain - ## HITS:1 COG:FN1676 KEGG:ns NR:ns ## COG: FN1676 COG3547 # Protein_GI_number: 19704997 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 3 412 2 389 391 115 27.0 2e-25 MKLFIGIDVSSKDLQVAITDSENYQKPLLNQSFSNDLIGANEVKKIILQLAKQNSYDKVI IGMEATSIYSFHPAYFFANDEDLQKINLETDVINPKNTKRFHDVYEENKNDPTDAYYIAE YLRFGKYHVTIARQEEYLALQRLTRARYEITSSLTRAKQHFIETLYYRVNKLVTVDKDNI KTSIFGATMLSIVTDSKTIDEIAEMPIEDLIDYLQTKGRGRFSDPETLAKAIRKAVRGSY RLGKVMKDSIDAVLSVYYAEIKTNQKLIKNLDKAITDIVQTLPEERILQSIPGIGSVYSA GIIAEIGSIDRFDTEAQLAKYAGLAWRQKQSSNFDSEHKPMTKNGNHYLRYYLVEAANLI RQRDPVFRKYYQKKYDEAFYSPHKRACVLCARKLTRTIFTLLKNGQIYQTPR Prediction of potential genes in microbial genomes Time: Wed May 25 06:24:28 2011 Seq name: gi|227862596|gb|ACKR01000072.1| Lactobacillus crispatus JV-V01 contig00074, whole genome shotgun sequence Length of sequence - 312 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 185 240 ## LCRIS_01423 transposase Predicted protein(s) >gi|227862596|gb|ACKR01000072.1| GENE 1 2 - 185 240 61 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01423 NR:ns ## KEGG: LCRIS_01423 # Name: not_defined # Def: transposase # Organism: L.crispatus # Pathway: not_defined # 1 61 1 61 408 128 100.0 8e-29 MQVTFGIDVSKSTSTVCELIGESKNELTITNNRPGFIQLLHELTAFSKHPQIIFEATGVY S Prediction of potential genes in microbial genomes Time: Wed May 25 06:24:30 2011 Seq name: gi|227862590|gb|ACKR01000073.1| Lactobacillus crispatus JV-V01 contig00076, whole genome shotgun sequence Length of sequence - 2704 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 1, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 193 - 726 204 ## RALTA_A0936 putative zinc-dependent metallopeptidase 2 1 Op 2 . - CDS 710 - 1072 365 ## BOV_0253 hypothetical protein 3 1 Op 3 . - CDS 1097 - 1489 302 ## SZO_14460 hypothetical protein 4 1 Op 4 . - CDS 1496 - 1903 361 ## ABC1055 hypothetical protein 5 1 Op 5 . - CDS 1903 - 2526 397 ## Shel_18760 hypothetical protein - Prom 2644 - 2703 7.1 Predicted protein(s) >gi|227862590|gb|ACKR01000073.1| GENE 1 193 - 726 204 177 aa, chain - ## HITS:1 COG:no KEGG:RALTA_A0936 NR:ns ## KEGG: RALTA_A0936 # Name: not_defined # Def: putative zinc-dependent metallopeptidase # Organism: C.taiwanensis # Pathway: not_defined # 11 174 4 168 175 106 37.0 5e-22 MRDIISYDSIFEVKPESRKDLRALARDVRLLLGINPCQLYIDITRVLEKISELDPNFSFE IVDNDELEYDVQAQTDIVKDKILIKESVYMGAIRNVGRDRMTIAHELLHLILHQPSSLTL YRRNGEIPIYKNPEWQAECFAGELLMPYERIKNMSESEIVDKCKVSQIAAHYQLTHI >gi|227862590|gb|ACKR01000073.1| GENE 2 710 - 1072 365 120 aa, chain - ## HITS:1 COG:no KEGG:BOV_0253 NR:ns ## KEGG: BOV_0253 # Name: not_defined # Def: hypothetical protein # Organism: B.ovis # Pathway: not_defined # 4 117 3 116 118 75 37.0 7e-13 MTYTALGKFLRKLRVDRDERLYDMAENVGVSSAFLSGVENGHKKASASLINNIVDRYNLD REQEQELKDALSISEESLDISKFSPEKQEATLMFARKFDDLTDKQIAQIQKILKEGERHN >gi|227862590|gb|ACKR01000073.1| GENE 3 1097 - 1489 302 130 aa, chain - ## HITS:1 COG:no KEGG:SZO_14460 NR:ns ## KEGG: SZO_14460 # Name: not_defined # Def: hypothetical protein # Organism: S.equi_zooepidemicus # Pathway: not_defined # 1 124 1 122 126 62 32.0 7e-09 MYELTKIINYEVTRDLVLESQKTNQSYTVFDDSDILGDDKFNFLKTGNRYSCRISILGDL SDSVSGTKFKVIGQEKVGGVKFRKVFNSVGDLFYLPAYDTKESNSIIYLNVKRYDLLSVN EIIYNKDFRK >gi|227862590|gb|ACKR01000073.1| GENE 4 1496 - 1903 361 135 aa, chain - ## HITS:1 COG:no KEGG:ABC1055 NR:ns ## KEGG: ABC1055 # Name: not_defined # Def: hypothetical protein # Organism: B.clausii # Pathway: not_defined # 17 131 35 152 156 62 34.0 4e-09 MGSGYKGYINTNGAKERLKPKDLMHELENSNAKYNKSDIVMITKNYAGKLMWLEKGNLKS GLLHIKTRHGKDFGSNTNIPLLAKKILQLKPIKHISRKEGKQLADVFIYNHNGMIYLIAY GDNGYIVSFYPIGKA >gi|227862590|gb|ACKR01000073.1| GENE 5 1903 - 2526 397 207 aa, chain - ## HITS:1 COG:no KEGG:Shel_18760 NR:ns ## KEGG: Shel_18760 # Name: not_defined # Def: hypothetical protein # Organism: S.heliotrinireducens # Pathway: not_defined # 48 197 3 151 161 121 37.0 1e-26 MSNLLNANFTGEDEYPVLNKQKEDLVIPFQMIRFSDRKIASLNDAICFYEWDKSFESKLK DERIAKLVPSLLKAGSVVQPDYSIYADEPLVLQKFAVYEKNRVALELQNYGLNIIPNLRW GDKRSYDFVFQGIPKHQVCSVGTYGQIADKEKRILFEAGLEIALEKVRPKKVLVYGTMPD DIFGPYKRNIKFIRYPSWQEIFAKEAC Prediction of potential genes in microbial genomes Time: Wed May 25 06:24:47 2011 Seq name: gi|227862575|gb|ACKR01000074.1| Lactobacillus crispatus JV-V01 contig00077, whole genome shotgun sequence Length of sequence - 13192 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 8, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 919 668 ## LCRIS_00588 hypothetical protein - Term 929 - 972 3.2 2 2 Op 1 17/0.000 - CDS 995 - 1648 721 ## COG0765 ABC-type amino acid transport system, permease component 3 2 Op 2 31/0.000 - CDS 1666 - 2307 708 ## COG0765 ABC-type amino acid transport system, permease component 4 2 Op 3 16/0.000 - CDS 2307 - 3125 977 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 5 2 Op 4 . - CDS 3137 - 3877 295 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 3910 - 3969 8.0 + Prom 4366 - 4425 6.2 6 3 Tu 1 . + CDS 4516 - 5145 708 ## COG0572 Uridine kinase + Term 5149 - 5207 12.2 - Term 5135 - 5193 12.2 7 4 Op 1 . - CDS 5210 - 6022 964 ## LCRIS_00582 permease of the major facilitator superfamily - Prom 6046 - 6105 3.3 8 4 Op 2 . - CDS 6107 - 6601 661 ## LCRIS_00582 permease of the major facilitator superfamily - Prom 6639 - 6698 5.1 9 5 Tu 1 . - CDS 6708 - 7286 615 ## COG4721 Predicted membrane protein - Prom 7398 - 7457 3.5 10 6 Op 1 35/0.000 - CDS 7467 - 9236 239 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 11 6 Op 2 . - CDS 9237 - 10970 235 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 12 6 Op 3 . - CDS 10957 - 11409 372 ## LCRIS_00578 transcriptional regulator - Prom 11501 - 11560 8.7 + Prom 11499 - 11558 8.9 13 7 Tu 1 . + CDS 11587 - 12405 681 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 12412 - 12452 4.1 - Term 12394 - 12446 15.3 14 8 Tu 1 . - CDS 12447 - 13115 675 ## COG0518 GMP synthase - Glutamine amidotransferase domain Predicted protein(s) >gi|227862575|gb|ACKR01000074.1| GENE 1 1 - 919 668 306 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00588 NR:ns ## KEGG: LCRIS_00588 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 290 1 290 303 592 99.0 1e-168 MSVNAQLTDRERVELTKKAYDELQLGDTIKIDQHYLGTVCRNVYAKDGMRAFVISSPNEI TILFKGSYGFKKGTPQTWRDEWIKTNLPILKALLARKRTIPSQLKSAAHLLNQTINQFKG SRIYIYGHSLGSINAQFALANCRHPEAIAAAYLYEGTNIWLLLTPAERRQVAKMREKIFN YVDIYDPVTLGITETHHMVGKLCYVDSEPMQPIKQHMWGGYHFNADGSLKLRKVDQAFLA ESRSERKLLARSGDLADFLEKMGSAEEVKKLATDKIEQLVQRYPDHKSLAKLTALFEGEI RKSKNR >gi|227862575|gb|ACKR01000074.1| GENE 2 995 - 1648 721 217 aa, chain - ## HITS:1 COG:BS_glnP KEGG:ns NR:ns ## COG: BS_glnP COG0765 # Protein_GI_number: 16079799 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 4 213 3 214 218 191 51.0 7e-49 METFIHAYSWVDIRFLLQGLWVTIYVSLISIALSFVVGLILGLVRYMKIKYVSAIVGFII DIIRNLPLLLIIFFTYFGLPQLGIVTNPTTASIAALVIFEGAMLAEIVRSGIGSVDSGQM EGARSNGMSYGQAMYHVIMPQALHNMISALLSQFVSLVKDTSLATIIVLPELLYHAQIIY SQNTTYLIPMYVIIAIMYFIVCFCLSTIANYLQKKYD >gi|227862575|gb|ACKR01000074.1| GENE 3 1666 - 2307 708 213 aa, chain - ## HITS:1 COG:BS_glnM KEGG:ns NR:ns ## COG: BS_glnM COG0765 # Protein_GI_number: 16079798 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 4 211 5 212 216 204 55.0 1e-52 MWQIITNNWGSFLTGFWNTILSSIIALVFSLILGVIFALLEVAPSKFGQVIAKIYIAIFR NIPLLVIVMIFYLIVPRYIVKLSGFQAGTIGLTLYTSAFIAETVRAGINSIGTGQMEGAR SNGMTYVQAMRYVILPQAMKIVIPPLGNQFVNLVKNSSVLAFVAGFDLMYQAQLIAFSTF QTIDTYIIVGLFYLILTLPLSYYMRHLEKKLVN >gi|227862575|gb|ACKR01000074.1| GENE 4 2307 - 3125 977 272 aa, chain - ## HITS:1 COG:BS_glnH KEGG:ns NR:ns ## COG: BS_glnH COG0834 # Protein_GI_number: 16079797 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 4 264 1 272 273 234 47.0 1e-61 MKKIKKFLFLPLLILLAFTLTACGKHASNNVYQKVKESKTIVWGVRADTRLFGLTNIKTG HIEGFEIDLAKALTKQMLGKDAKTDFVTTTANTRIPLLKNGNVDAVLATMTITPERAKQV TFSKPYFPAGSSLLVPNNSKIKNVKDLEGKTVLAVKGTTAVDDVHKYAPKARILQYDDYG QAMSALKANQGVALTTDNGLLAGIAQENPGYKLVGGVYSNAPYGIAVNKGQKQMADHIDQ ALNELQKNGTYDRLIKKWFAGIPGFSLKGVLK >gi|227862575|gb|ACKR01000074.1| GENE 5 3137 - 3877 295 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 219 1 221 223 118 35 3e-26 MTAIIEFKHVDKYYGKLHALKDINLKIDEGQVVSIIGPSGSGKSTLIRTMNGLEPINSGQ LIVTGYDLADKKTDINKIRKNVGMVFQHFNLYNNHTVLENVMLAPKIVLKRPDDENRKVA MQYLEKVGMADKIDSYPRQLSGGQKQRVAIARSLAMHPKVILFDEPTSALDPEMIEDVLE VMRYVAEQGITMVVVTHEMGFAREVSNRLIFFDNGHILEDRKPEEFFAHPDTERARQFLS KVISKD >gi|227862575|gb|ACKR01000074.1| GENE 6 4516 - 5145 708 209 aa, chain + ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 1 209 1 206 211 236 58.0 2e-62 MGKLEKPIIIGIAGGSGSGKTTIAHEIADNINDQDRIMIMTQDSYYKDNTGVSMEERMKI NYDHPDAFDMPLLEAQLSQLMHRKPIEMPTYDFTAHTRSDETIHVEPADIIILEGILVLF NEDIRNLMDIKVYVDTDDDIRFIRRLERDMKERGRSLDSVINQYLGTVKPMYNQFIEPTK RYADIIVPEGGENDVAIDMLTTKLQSVLK >gi|227862575|gb|ACKR01000074.1| GENE 7 5210 - 6022 964 270 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00582 NR:ns ## KEGG: LCRIS_00582 # Name: not_defined # Def: permease of the major facilitator superfamily # Organism: L.crispatus # Pathway: not_defined # 1 270 194 463 463 484 99.0 1e-135 MLTGQTLADYTNSYRILLYITAAVTMLAFVLALFIHDVPRDYRSTADDKEPSRAEKMAMY KKLLSKKTLMWIVYIAGIQLGARLVAVYVPIYLNSYLHIPRDVTSTINTFVQAAMLIGYF FAPFLEKKMGAIVSVAAGTLTCVPVMLLLANGRRLGSETVLFVIVGLLLFLRTGLANATM PIQQEVQMVIVDKDLRPAFTGVVQIAYAVVGVIDGLFTEFYLFTTQDGYANAYYIAAVIY VIASVLLLVFFAKKYNRILDTANAQDDNQN >gi|227862575|gb|ACKR01000074.1| GENE 8 6107 - 6601 661 164 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00582 NR:ns ## KEGG: LCRIS_00582 # Name: not_defined # Def: permease of the major facilitator superfamily # Organism: L.crispatus # Pathway: not_defined # 1 164 1 164 463 284 100.0 7e-76 MARRSNAEKEAEAEAIKNWNPRYKHNVIIYLWIYGILGAVTGITNDAALSYYKIVAPHLI SGLNIFNAATAILMSVMIATVHKWGYRKILLILPPMTAIFMALTCITTNQLVIMIAYTIS WTAIGVYDLMYPLMWTSYVPGKIRTKMFSTVMIVNLITQTICTF >gi|227862575|gb|ACKR01000074.1| GENE 9 6708 - 7286 615 192 aa, chain - ## HITS:1 COG:SP0719 KEGG:ns NR:ns ## COG: SP0719 COG4721 # Protein_GI_number: 15900616 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 7 185 4 179 186 92 35.0 6e-19 MFTRSSKWNVKSVILVALIGIIMGVIYTYGFNNVYNLVKLSFLPTGYAPVVDNVFTGLWY MAAPLAMYFVPTKGAGTIGELLAATVEMAIGGQWGALTIFEGLIQGAMNEIGFFPKKERY EKFSWKSVLTGAFFANLGGFIPSYFLFGWSHYQVNVQMLMFIVSMISSLLFDGVLVKLIT NLFDKALKPKVA >gi|227862575|gb|ACKR01000074.1| GENE 10 7467 - 9236 239 589 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 366 567 147 347 398 96 30 8e-20 MSNTKKALRYFAKYLKPYWKGITIVVILSLISSGAQVMAPTYLGRSVTALTTYLVDLKKG TASMNTFYSALWSMFLFYLLSQIAIFIAWMVMSKFNADSTNDMRENLFAKFQRMLVRYFD THQDGKLLSLFTSDLDNIFNAMNNAIFEIISQGIMFVGTIIVMFTINSTLAWTTIATTPF ILIISVLLMKKARVYIDKQQDEIGDLNGYITEQINGEKVIITNGLRQESVDGFKVYNNKV RTVLFKGQFYSGILFPLMNGLNLLNLAIVIAMGSWMIISGQISQAIGLGLIVTFVEYSQV YFQPLTQITSIYSMIQLALTGARRLATVEEQKDENEVPNGKVISGLNHGVKLENVHFGYN KDKEILHGVNISVDKGQSVALVGPTGSGKTTIMNLLNRFYDVNSGKVTFDGTDVRDIQLT SLRNNVGIVLQDSVLFTGTVADNIRYGKPNASMDEVISAAKQANIHDFIETLPDGYDTQV SDASSIFSTGQKQLMSIARTILTNPPFLILDEATSNVDTVTEEKIQKAMDTVIAGRTSFV IAHRLKTILNSNKIVVLKDGNVIEEGSHEALLKEKGFYYKLYTDQMAFD >gi|227862575|gb|ACKR01000074.1| GENE 11 9237 - 10970 235 577 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 329 558 126 354 398 95 26 2e-19 MENFKIILPYLKRYKKDVVCAIIAILFSAFSGLYQPKLLENIQKALMANQKQAVLSDGIW LVVLGIIAIISGIFNVYFAAKIAQGVVSDLREDTYAKIQTFSFGNIKKFSAGSLTTRLIN DMNQVMNMMMQLFMQMLRLPILIVGSFIFCIVIIPRFWWAPVVMVAIIFGFGAYVLRQMN SLFAKFQEMMDRISNQAQETLQGVRVVKSFNQGPQEIKKFDQTSDQLNNYNIVIGYWFSA IMPAFQMIAYTVIALIVYLIGKNITAHPSDIAVVSPFVNYVLTLLFTIMIAGMTLMQFSR ANISLGRIREVLETEPDVKFVESGSVAPLSGSVEFDHVSFTYPDGDDPTLKDISFKIKPG QMVGIVGATGAGKSTLAQLIARLYDPTKGEVKIGGQNIKDVTEAALRKTVSFVLQRAVLF SGTIASNLRQGNAQAKLHELQRAANMAQASEFIERYNDSFDHEVEERSANFSGGQKQRLS IARGLIAKAPILILDDSTSALDAESEKKVQQALEHELPDTTTFIIAEKIVSVINADTILV LDDGKLVAQGTHEELLKTSPVYQEIFKTQKGKKGGNE >gi|227862575|gb|ACKR01000074.1| GENE 12 10957 - 11409 372 150 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00578 NR:ns ## KEGG: LCRIS_00578 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 150 1 150 150 285 100.0 3e-76 MKISETEKLNLSIIHGSRAYSQWEQDHDLPDYLVVIMYELLIRGKLTQRELVNLSDLPKQ SINKGIKILRDHDHITMTVDPSDKRVRFCQLTEAGRKYAYDRLRPLFELEEKTAQAMGTD KMKLLAKLSEEWSTTFWHFLSEERSKNGKL >gi|227862575|gb|ACKR01000074.1| GENE 13 11587 - 12405 681 272 aa, chain + ## HITS:1 COG:BS_glnH KEGG:ns NR:ns ## COG: BS_glnH COG0834 # Protein_GI_number: 16079797 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 1 263 1 272 273 215 43.0 8e-56 MRKKFLLIISIVVLFALPLSGCKQNKKQNVYQAVKTSKTINWGVKADTPLFGSINIKTGK LNGFEIDLANALTHEMLGKNVKANFITTTANTKIQLLKNTNVDAVIAAMTITPERKKQVE FSHPYFPAGQSIMVADSSAIKNAKNLNNKKVLVVKGTTAADAIHQVAPKAEILQFDDYGQ AFAALKAGQGDAFVTDNGILAGILRDSSGYKLVGGTFTNQPYGIAVNKGQNDMLKHINTA LAKLEKNGTYNHLVKKWFGNIPGMNIKELEKK >gi|227862575|gb|ACKR01000074.1| GENE 14 12447 - 13115 675 222 aa, chain - ## HITS:1 COG:lin0511 KEGG:ns NR:ns ## COG: lin0511 COG0518 # Protein_GI_number: 16799586 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase - Glutamine amidotransferase domain # Organism: Listeria innocua # 1 220 1 220 226 153 38.0 2e-37 MRVNVLQHAPNEGPGSIQAWCHARDNEMFVYHPGNFGILPTVDETDLLVVLGSPNSPNDD LDWVKNERVLIRQMLDQHKPILGICFGSQQIAKTLGYKVLDAPAKEVGWAPVYLQDQTIT GIPDKLTALHWHEQMSEIPTEAKLLFSSDLVKNQGFLLGDNVIGLQFHFEPQIDNVREIA INDGAYALENNDLHQTPTEIINHGVPEKNKDVMFTLLDFIAK Prediction of potential genes in microbial genomes Time: Wed May 25 06:25:02 2011 Seq name: gi|227862571|gb|ACKR01000075.1| Lactobacillus crispatus JV-V01 contig00078, whole genome shotgun sequence Length of sequence - 3812 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 12 - 71 7.3 1 1 Op 1 4/0.000 + CDS 97 - 1428 1489 ## COG0531 Amino acid transporters + Term 1540 - 1575 4.0 + Prom 1430 - 1489 8.7 2 1 Op 2 . + CDS 1655 - 2974 1214 ## COG0531 Amino acid transporters - Term 2767 - 2817 0.3 3 2 Tu 1 . - CDS 2971 - 3774 878 ## LCRIS_00573 hypothetical protein Predicted protein(s) >gi|227862571|gb|ACKR01000075.1| GENE 1 97 - 1428 1489 443 aa, chain + ## HITS:1 COG:BS_ykbA KEGG:ns NR:ns ## COG: BS_ykbA COG0531 # Protein_GI_number: 16078351 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Bacillus subtilis # 2 432 5 434 438 344 46.0 2e-94 MDNHLKRSIGLGSALSIIVGTIIGSGIFFKQASVLDSAGSTFMALLAWILAGIITLTAGL TIAEIGAQMPYTGGLYVYIEKIYGRVLGFMAGWMQAIVYGPAMIAAVTGFLSIMVTNLFG IGTEWRIPIGLITIIAIGGLNFLENKVGAAFAIITTIAKMIPIFAIIFCGICWGEQNAVA QTVTELNRSTGGLGVAVLAALFAYDGWIFIANLGGEIKNPQKLLPKAIIIGITTVLVIYA LITIGIFSFIPADKIHALGKNSTTYLADAILGPIGGKVLSVGIIISMLGTLNGEMLTFPR IIYAMAKRGDLPFSRFLSYVTPKGKAPVIATMLLITLTGIMMTFFDPDYLSNLCVFTIYS FYVLAFFGLFILRYKNKDQRPFSVPFYPLIPLVAIAGGLFVLVSQFFNDPAGVLLFTGIT AVGWPIFFLVKKMSKAQNTIIED >gi|227862571|gb|ACKR01000075.1| GENE 2 1655 - 2974 1214 439 aa, chain + ## HITS:1 COG:BS_ykbA KEGG:ns NR:ns ## COG: BS_ykbA COG0531 # Protein_GI_number: 16078351 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Bacillus subtilis # 2 432 5 434 438 384 49.0 1e-106 MDNKLKRSIGFGSAFSIVIGTIIGSGIFFKQASVLDSAGSTTMALLAWIFGGLITLAAGL TIAEIGAQMPYTGGLYVYIENLYGRILGFMAGWMQIIVYGPAIIAAVAGFMSIMMTNFFG LNHSWRIPLALITVLAIGIMNFFENKVGAIFSVITTIAKMIPIAVITICGICWGQQDAIN QTVAEVSQHTSNFGVAVLATLFGYDGWILIANLGGEMKNPQKLLPRAIIAGITAVLAIYT LITIGIFRFIPANQIYQLGENTTTYLANAVFGAIGGKILSIGIIISMMGTLNGKMLTFPR IVYAMAKRGDLPFSKYLAYVTPKGKSPVVATFFIVLLALLMMIFFDPDHLSDLCVFTVYC FYLLAFFGIFILRKKNKAERPFSTPLYPFVPIIAILGGLFVLISELINDPAGVLLFAGIV IIGLPIFYAVKRMNKHRLH >gi|227862571|gb|ACKR01000075.1| GENE 3 2971 - 3774 878 267 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00573 NR:ns ## KEGG: LCRIS_00573 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 267 1 267 267 528 100.0 1e-148 MKKKYGKNLIFEDFIHDREVKMYRSDAEDSVHSDYTLNVQVFTLDNLPFSPLTGDQQHIF FDYEKAGTDAVKITGVEGHFYNAITRRYEVTDHTFVVGELLDDKVSETVATQQMREAAEK VIAELSKRIPMPPHIKHPKILTDVQRAEKLVTDRNVKITSLSKATGISTYTLYNYRKNPA SLHKASQATVDCLTSKYFETYFSRNEIERFRMMLINIVGAYLKETEGNPIAYDPAHALYT MCQKGDWHRLAKMEELWRASYSVERSL Prediction of potential genes in microbial genomes Time: Wed May 25 06:25:11 2011 Seq name: gi|227862556|gb|ACKR01000076.1| Lactobacillus crispatus JV-V01 contig00079, whole genome shotgun sequence Length of sequence - 14436 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 7, operones - 4 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 46 - 966 701 ## COG4989 Predicted oxidoreductase - Prom 993 - 1052 4.5 2 1 Op 2 . - CDS 1054 - 2676 1524 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 2706 - 2765 11.8 3 1 Op 3 . - CDS 2770 - 3852 1395 ## COG1363 Cellulase M and related proteins - Prom 3923 - 3982 14.2 + Prom 4223 - 4282 2.4 4 2 Op 1 . + CDS 4315 - 4527 155 ## LCRIS_00569 hypothetical protein 5 2 Op 2 . + CDS 4524 - 5828 861 ## LCRIS_00567 putative protein without homology 6 2 Op 3 . + CDS 5821 - 7020 1181 ## COG0477 Permeases of the major facilitator superfamily + Term 7026 - 7061 4.0 - Term 7013 - 7048 4.0 7 3 Tu 1 . - CDS 7055 - 8524 1207 ## COG0477 Permeases of the major facilitator superfamily - Prom 8559 - 8618 5.0 + Prom 8518 - 8577 4.4 8 4 Op 1 7/0.000 + CDS 8809 - 9336 734 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase 9 4 Op 2 . + CDS 9348 - 10679 1060 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 10701 - 10743 9.4 + Prom 10773 - 10832 3.9 10 5 Tu 1 . + CDS 10866 - 12398 1297 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen + Term 12404 - 12460 8.1 - Term 12397 - 12440 8.1 11 6 Op 1 . - CDS 12450 - 12722 324 ## LCRIS_00561 putative protein without homology 12 6 Op 2 . - CDS 12804 - 13640 826 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 13675 - 13734 5.7 - Term 13746 - 13801 13.2 13 7 Tu 1 . - CDS 13804 - 14241 250 ## LCRIS_00559 acetyltransferase - Prom 14348 - 14407 8.6 Predicted protein(s) >gi|227862556|gb|ACKR01000076.1| GENE 1 46 - 966 701 306 aa, chain - ## HITS:1 COG:BH3927 KEGG:ns NR:ns ## COG: BH3927 COG4989 # Protein_GI_number: 15616489 # Func_class: R General function prediction only # Function: Predicted oxidoreductase # Organism: Bacillus halodurans # 1 306 1 305 305 354 53.0 1e-97 MKRIKMGCTTLSIPAMALGIMRMNQKSVPEAQVAIQAAYDAGINFIDSADIYGGGKSEEI FGQAFSQMQIKREEMFIQSKTGIVPGKRYDFSKEHILHSVDEILERMQLDYLDSLVLHRP DALMDPEEVAEAFDQLQAAGKVRFFGVSNFDTAQFKLLQSCLSQRLMFNQLQFSLKHTGM IDFGMHMNMVDKPSVDRDSQFLDYARLHKVTVQAWSPFQYGMFEGTFIDNDGFPKLNQEL QKLADKYEVGKNAIAAAWILRHPANIQMLVGSMNPQHIRDSAKGAKIRLTRQEWYDLYLA AGNYLP >gi|227862556|gb|ACKR01000076.1| GENE 2 1054 - 2676 1524 540 aa, chain - ## HITS:1 COG:BS_ykpA KEGG:ns NR:ns ## COG: BS_ykpA COG0488 # Protein_GI_number: 16078507 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 540 1 538 540 706 62.0 0 MITVSDVSLRFGGRTLYEDVNLKFTPGNCYGVIGANGAGKSTFLKLLEGKLEPTTGSISI DPNERMSSLNQDHFAFEDFTVMDTVIQGHKELYQVMKEKDALYAKPDFGDEDGVKAAELE SKFAELDGWNAEADAAKLLQSLGIPEEEHQMMMKDLPESEKVKVLLAQALFGNPDILLLD EPTNGLDVHTVEWLEDFLADYPNIVIVVSHDRHFLNQVCTEMCDVDRGKIQLYVGNYDFW YESSKLANELAANQNAKKEEKMKQLQEFIARFSANASKSRQATSRKKQLDKITLDDIKPS SRKYPFVKFEMHRDLGNDLVKVENVSYSVDGEKILDNVSFIVRPGDKVAFLSRNALATTA LLDIVAGKLKPDTGTVTWGQTTAFNYMSRDLNANFNNDELTILDWLRQYATKEQDDNTFL RGFLGRMLFSGEEIEKKIKVLSGGEKVRCQLSRMMLEPANVLIMDDPTNHLDLESITALN DALVSYPGSILFTSHDHEFIQTIANHIIEVGPKGIVSRQDTSYDEFLDKESIQSAVAKIY >gi|227862556|gb|ACKR01000076.1| GENE 3 2770 - 3852 1395 360 aa, chain - ## HITS:1 COG:lin1180 KEGG:ns NR:ns ## COG: lin1180 COG1363 # Protein_GI_number: 16800249 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Listeria innocua # 4 358 2 357 359 186 33.0 9e-47 MQKEQEIQMLKEFSDANSTSGFEEEFVKLFTSYAEKTADIEVDGMFNVYAAKKENKGNRP VIQLDAHSDAVGFITQAVRPNGLIKFVPLGGWVKYNIPALRVKVRNRDGEYIPGVVATKP PHFMTAAERNNVPDVADMSIDVGSSSREETIKDYKIDTGCPIFVDVKCEYHEKSGLFFGK DFDDRFGAGAMVDVLDNLKGEETNFDVVAALSSQEEVGLRGAYVTARKVKPDLCLVLESC PADDTFTPDWLSQTGLKRGPMLRDMDTTFLPNPKFQQYACDLADKNNIPYTRSVRTGGGQ DGAAIYYENGAPTIVIGIPVRYEHSPYCFSSYKDFKASVDLATAIIRDITQEKLDSFKKF >gi|227862556|gb|ACKR01000076.1| GENE 4 4315 - 4527 155 70 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00569 NR:ns ## KEGG: LCRIS_00569 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 70 125 194 194 135 95.0 3e-31 MIAIEQHQGQTWMRVREFLTTVDIIYITGQFKGHHCLYLAYSFGDIHNALFKNKALAIKY KNYDFSKIKS >gi|227862556|gb|ACKR01000076.1| GENE 5 4524 - 5828 861 434 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00567 NR:ns ## KEGG: LCRIS_00567 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 183 434 1 252 252 431 98.0 1e-119 MKDINNLLQQKSNLLLKISSLPLNLFPYLVFSLIIKQNTAISVLPFALFYAFRRTTLFLF KGGENEDNVIGWVGLLAALLGYFLGIFGIFLPALYRISASLAGIGAACFPSVQKQIAIQS DYHPSKNDLFAYFGAILILLAIVVFVEPHLPTISFIAMLIYTLIAILGFKYSPFRAHSRE IVLQWKNVWLTLGLLLAILLIREGWNSGKDIFSIFGIIVSAVVIINYLIKLALSQKHGKL SRKMQYRLTIAGLCQDFTTIFSAVYISVLFGAKNYYWLFVIILIASFIKRPLLKTLREYL PFDDFTIQSWGIVLGLVITLFRPTYFAGIFLIRIFYSLQNTDTLDLIRDHVDTNIYMINY RFRTAGGFLTQLILWGGLLLFNGPHIFEQIFNYHINKSVMNSSQPLFLTQLILVLFIISF TIYTLKLNKGNKNE >gi|227862556|gb|ACKR01000076.1| GENE 6 5821 - 7020 1181 399 aa, chain + ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 7 393 4 390 402 378 52.0 1e-104 MNEKPIWKKNLLVLSIAVFIAGIAFSEVMPFLPLYIDTLGNFTHKQLNFWSGFIYSGTYF VSAIISPWWGKLADKKGRKPMTLRASLGMAIVLGCMGLVTNVYQLFILRMLQGIFAGFVS NSNALVATETPKEKSGQALGTMASSFTAGNLLGPFIGGALASIFSYRVTFFITGGLLLIA FLLSLFFVHETDFKPVTEKKLDKASGVIKELRSPQLIFGLLLTTLIIQAANNSINPIVSL YVKQLMANHGNVVFISGVIAALPGIATFLAASRFGALGDRIGTHKIIIAGFIGATILFFL TAFVQNTVELGILRFLVGFTDACLFPQVQTLLTKNTPAKITGRIFSWNQSAMYIGNIFGP LLGSTISGLTNYSTVFIVTAGIVVFNLILFRFNVIKNLQ >gi|227862556|gb|ACKR01000076.1| GENE 7 7055 - 8524 1207 489 aa, chain - ## HITS:1 COG:L35134 KEGG:ns NR:ns ## COG: L35134 COG0477 # Protein_GI_number: 15672220 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 458 1 458 486 252 33.0 1e-66 MTKKQISMVTLSLLLANIMSGLDATIINTAIPAIVSDLHGIQYMGWIVACFLLGMSVSVP IWSKIGERMGNKFAFELSLALFILGSVLEGVAPDIYFFLISRVLMGVGAGGMGSLPYVIV GYIYPNIKRRTVILSYIAASFSAACIAGPLVGGWIVDALSWHWVFYINVPLGLISIILSF LFYRGIRKPNINTVFDRLGAFTLIGGLTCFLIGIQMLGLASNFLVAIFVIIGIVMLVWFI LVEKKAASPIVPLSVFTNKALVGDFILFAFAWGAYIAVNTYLPMWSQAILGTTALIGGMT LIPNSIFDIAGSQSTPHLLRHFNNYHLLIFDFTLIAITVIGLIIVPISTPYQILMSIAAL SGLGVGSIFVILQIKVQIDAGEKDMAPATSLSFLIRILAQTIMAAVYGVIMNLALARGIA GHHNITMTMMNKLSDAESAKSLPKALMPTMRTIFHTGIREIMIVSLLLIICGYVANFIYN HHEAKKAAE >gi|227862556|gb|ACKR01000076.1| GENE 8 8809 - 9336 734 175 aa, chain + ## HITS:1 COG:lin1954 KEGG:ns NR:ns ## COG: lin1954 COG2065 # Protein_GI_number: 16801020 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Listeria innocua # 5 174 7 179 183 192 58.0 3e-49 MAKEIIDALSMKRALMRMTYEIVERNKGTKDLVLVGIKTRGWYLAERIAKNLKNLEDVEV PVGAIDISQYRDDLPEAEKEKMIHSQQLDFDITDKNVILVDDVLFTGRTIRAALDALMDQ GRPAKINLAVLVDRGHRELPVRPDFIGKNIPTAMNEKVKVAMTEVDDKDSIEIVK >gi|227862556|gb|ACKR01000076.1| GENE 9 9348 - 10679 1060 443 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 14 435 5 437 447 412 48 1e-115 MNKKEKYRNPEAVLDVYEKPEFGQGVLLSLQHMFAMFGSTVLVPILIGINPSIALLSSGI GTLVHMLLTHFKIPAYLGSSFAFVATMQALMKADGYPAVAQGAIASGLVYVVVAIIISKI GSGWVNKVLPPIVVGPIIIVIGLSLATTAANDAMMNNSKYDLTYFGVAIFTLVMTLVFQM CFKGFTSLVSIMLGIICGYILSCCLGIVDFSGVEKAAWFTLPALDVPGISYHFKWYPAAI LAMAPIAFVTMTEHMGHIMVLNSLTKRDFFKNPGLHRTMMGDGLSTIIAGFIGGPPTTSY GENIGVLAMTKVYSVWVLAGAAVSAIIFSFVGKLAALIESIPMPVIGGISFLLFGTIASN GLKILVDDQIDFGEKRNMLIASVILVIGIGGAYLQLGNFQLTSVALSTIIGMLLNWILPK KAASEKAQEEKIKQEKQEGKIYQ >gi|227862556|gb|ACKR01000076.1| GENE 10 10866 - 12398 1297 510 aa, chain + ## HITS:1 COG:MA2369 KEGG:ns NR:ns ## COG: MA2369 COG2865 # Protein_GI_number: 20091201 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Methanosarcina acetivorans str.C2A # 20 401 13 367 510 70 24.0 1e-11 MDFLNFKAITQTGNFKTPSENENIEYKEASWKLPKSFWETVSSFANTLGGIIVLGIAEDK SKHEFSITGVDNVEDIETQIFNDNNNISCLNRPVIQNNDVQISVFQNKTIIQVIIHPEPF NTRPITAFGKAYIRTGDGDRVTTKEQLKYFTVESQNEIDTHLLPSTYTIEDLDAENIKEY RKIIDKKGIISTNSQLSDQEFLYSIGVFRKDRLSNSNEYHLTDGGLLFFGKYISITDRFP RFQLDYQQYNSDNSTNWNDRVSAGDMNYPTLNIFSFYNLVLTKIEANVPDPFIQGSDLSR TSYHNDLIIAAKEALVNCLMHSYYDGMVGVKIVDRPSYFEFTNPGTMRVSKESFLRGQYS SIRNTEIASLFRRIGVSETAASGGPRILNTVLQNNLNDPEINIDYEINTTRIRIFKTFAI DNQEKLTEPEKFIMSFASRNPNFSINDIVKDPQNHFGKQTTIRKYVNSLVEKHLLSNEKI GKKYIYNLQKNNDYLNRVKHLKHLEDNLLK >gi|227862556|gb|ACKR01000076.1| GENE 11 12450 - 12722 324 90 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00561 NR:ns ## KEGG: LCRIS_00561 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 90 1 90 90 104 86.0 9e-22 MKKMRLIGTIIGVAGAIGAVAAVVYKKFKEKQAMVNTPQEKTLLLGNTSSKAKSELMKAE LSENDQVETNNTEIPHVSLDDDKPRIFEDK >gi|227862556|gb|ACKR01000076.1| GENE 12 12804 - 13640 826 278 aa, chain - ## HITS:1 COG:lin2739 KEGG:ns NR:ns ## COG: lin2739 COG0656 # Protein_GI_number: 16801800 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Listeria innocua # 5 275 4 274 283 296 52.0 3e-80 MKDYVILNNGVKMPRLGFGVYQIDDLAQTQQVVENGLEVGYRLVDTAQIYGNEQAVGDAL VHSSIPREDIFVTSKIWVDKYGYDQTLQAFDDSMKKLKLDYIDLYLIHKPYNDYYGTWRA LERLYKEGRIRAIGVSSFWNERLADLITFNDVKPAVNQIETNVWNQEWKSQQYMEKEGVQ PEAWAPFAEGANHIFTNPVLQKIAEKHHKTTAQVMLRWFLQRNYVVIPKSVHRERLAENF DVFDFELDDDDMALIKTLDQGYSVLEDEMDPEIAESFR >gi|227862556|gb|ACKR01000076.1| GENE 13 13804 - 14241 250 145 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00559 NR:ns ## KEGG: LCRIS_00559 # Name: not_defined # Def: acetyltransferase # Organism: L.crispatus # Pathway: not_defined # 1 145 12 156 156 282 100.0 2e-75 MFSLLAMSLHRNVKFHAIYNDGQFCGITYYAENDNTVYLTYLAINEKLRGQGYGSKILMM LEDRFPDKQIVIDIEPVTKKAKNYKQRVSRLKFYERNGFHRTDRKLVDPDGEFEALTTGK KLDIDSFTRMLKQMSFGFYQAKVEK Prediction of potential genes in microbial genomes Time: Wed May 25 06:25:24 2011 Seq name: gi|227862554|gb|ACKR01000077.1| Lactobacillus crispatus JV-V01 contig00080, whole genome shotgun sequence Length of sequence - 300 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 299 411 ## LJ0621 hypothetical protein Predicted protein(s) >gi|227862554|gb|ACKR01000077.1| GENE 1 2 - 299 411 99 aa, chain + ## HITS:1 COG:no KEGG:LJ0621 NR:ns ## KEGG: LJ0621 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 93 2072 2164 2789 105 64.0 5e-22 IIVKEPGKEPQTNTQTVHFTNKDKDGNSGYKDPVTGEIKYNTDWHVASDLNAKTGSWEEY TAPSVTGYTPSQAKVEAKTVTAETEAASVTISYTKNADI Prediction of potential genes in microbial genomes Time: Wed May 25 06:25:26 2011 Seq name: gi|227862553|gb|ACKR01000078.1| Lactobacillus crispatus JV-V01 contig00082, whole genome shotgun sequence Length of sequence - 200 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:25:27 2011 Seq name: gi|227862551|gb|ACKR01000079.1| Lactobacillus crispatus JV-V01 contig00083, whole genome shotgun sequence Length of sequence - 991 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 33 - 107 87.5 # Gly GCC 0 0 - TRNA 219 - 293 87.5 # Gly GCC 0 0 + Prom 364 - 423 11.2 1 1 Tu 1 . + CDS 506 - 961 459 ## lhv_1122 hypothetical protein Predicted protein(s) >gi|227862551|gb|ACKR01000079.1| GENE 1 506 - 961 459 151 aa, chain + ## HITS:1 COG:no KEGG:lhv_1122 NR:ns ## KEGG: lhv_1122 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 6 150 13 157 158 124 42.0 2e-27 MPKFNIREYQPNDYAEVCRIHDVSRKEELTIGGAEKYFIPLETAPYKDDFFSCKIYVAYD ADSILGFVAVHPQELDYIYVDPIHQNKGIGYALATTALRYMSRPVSLDVFAENTKAKKLY KKLGFKCQEVRYQQWDLNDPKKYSDEKMILN Prediction of potential genes in microbial genomes Time: Wed May 25 06:25:30 2011 Seq name: gi|227862549|gb|ACKR01000080.1| Lactobacillus crispatus JV-V01 contig00084, whole genome shotgun sequence Length of sequence - 214 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:25:32 2011 Seq name: gi|227862541|gb|ACKR01000081.1| Lactobacillus crispatus JV-V01 contig00086, whole genome shotgun sequence Length of sequence - 6417 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 5, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 44 - 529 446 ## LCRIS_00104 hypothetical protein + Term 565 - 602 7.4 2 2 Op 1 . - CDS 530 - 1987 1026 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes 3 2 Op 2 . - CDS 2007 - 2933 571 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold + Prom 2912 - 2971 7.9 4 3 Tu 1 . + CDS 3029 - 3799 618 ## COG0328 Ribonuclease HI + Term 3807 - 3833 0.3 - Term 3795 - 3821 0.3 5 4 Tu 1 . - CDS 3826 - 4779 1069 ## COG4086 Predicted secreted protein - Prom 4826 - 4885 5.7 + Prom 4788 - 4847 4.9 6 5 Op 1 1/0.000 + CDS 4940 - 5752 828 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 7 5 Op 2 . + CDS 5761 - 6415 537 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) Predicted protein(s) >gi|227862541|gb|ACKR01000081.1| GENE 1 44 - 529 446 161 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00104 NR:ns ## KEGG: LCRIS_00104 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 161 1 161 161 299 99.0 3e-80 MKYMTYFYVAIDILLVVYACYSWYWQAKVDFRGRYRISSVVWALIFIWLGFTWNYIEKGD PGLSVFLALFILISIVDGFSGFSKKRMVVSGYFKRTVKYDDLASATLIQIPNQEKPLVMA IFRTSDGKAYMMRFNNEVNSVIKQLQEYAGREIPVEVQSMM >gi|227862541|gb|ACKR01000081.1| GENE 2 530 - 1987 1026 485 aa, chain - ## HITS:1 COG:L186875 KEGG:ns NR:ns ## COG: L186875 COG1502 # Protein_GI_number: 15673156 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Lactococcus lactis # 11 485 18 487 487 422 44.0 1e-118 MIWWHDFVRIIIITNTILAFYVVFHRRRSVSTTWAWLIILLVLPVVGITLYAFFGRGISQ ENIFAINKQKHIGLRNVQKSIAKAPKNTSPSDTSKAGNIAINFFNHQQEAPLTKNNQVKL YTEGETFFHDMLKDMVRAKETINVEFYTFYSDNIGNRVLQLLIKKAKQGVKVRVIYDAWG SMGATKAWFDQLRAAGGEVLPFITSRNMITRYRINYHLHRKIVVIDGRISWTGGFNIGDQ YLGKKKKFGHWRDSQVRIVGSASLLLQERFVMDWNASITNNQQLIRFNSTLFPDLDEKNI HEGDVATQIISDGPDRYAPYMRNGMMRLMLLARKRLWIQTPYLIPDDAVFATWQTIASSG VDVRIMIPCKPDHPFIYRATQWYANELTRLGVKIYIYEDGFLHAKTTIVDDHFSSVGSMN QDFRSYNLNFEDNAVFYDKKFNQKMVAAFEEDMKHSHLLTKEEIKKQSRALRTLQAFSRM LSPIL >gi|227862541|gb|ACKR01000081.1| GENE 3 2007 - 2933 571 308 aa, chain - ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 64 304 44 286 289 94 29.0 2e-19 MFFNTKKYAEEVEKDHKHDLQEEPSMFNMISLGLMATFAPTRIFLKLHKRHIENKANIEK SDLKQVPIIYFHGFRGGDYTTRVMVKHATYDKGNPKFLKVTVDLLGNFKLEGTWTSDKHP IVQVAFRQRIVGIYGIDYYLNFVLPFLAKRYGFKNYIAVAHSLACPCIIRTEMKHYRSKT FPHLKKCAFIAGPFDGVTYLGDIPNVNYLTESGRPSVMNPHYLYLFFNRRKFNPDISVLN IYGNVLDNTNTDKFISVVSAKSIRYIVAPKAHFYQEVEVRGKDDAEHSWMHDNPFVIDII DKFLKLKK >gi|227862541|gb|ACKR01000081.1| GENE 4 3029 - 3799 618 256 aa, chain + ## HITS:1 COG:CC3365 KEGG:ns NR:ns ## COG: CC3365 COG0328 # Protein_GI_number: 16127595 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Caulobacter vibrioides # 126 254 20 143 149 69 36.0 5e-12 MKFYAVKKGRTPGIYRTWDAAKEQVDGFSGAEYKSFEQITDATDYLDWNAQTQSDVLQKG EDNLQNAVKRVQQKSQEIKKAPRKKAKQYNHVNSNPADFFAVTYTDGGTRNTGVYKGGHV KKTDKAAWAYLIEWDDQKVHGSGGEYGATNNKMEQTALINALKKLLELGFNDKHLLFVLD SQYVLNAINKHWLQGWKKRGWRRSSGPLANVAEWQELDRLLKEFPDSTFEWTKGHANNRG NEFVDHELNRYMDQKM >gi|227862541|gb|ACKR01000081.1| GENE 5 3826 - 4779 1069 317 aa, chain - ## HITS:1 COG:SP1027 KEGG:ns NR:ns ## COG: SP1027 COG4086 # Protein_GI_number: 15900898 # Func_class: S Function unknown # Function: Predicted secreted protein # Organism: Streptococcus pneumoniae TIGR4 # 2 307 3 319 324 126 33.0 6e-29 MKKFITLLTAMLLSVVAMISFTKPVLADDDTPVVTLGTSLTDAQKQGTLKTLTAPLNGGN YQTITVTGSDLVKYLNPSGDNFTTSSGVWSSAMIQKTSSGSGINVKILDYDGKNNITTIT ANQYKNAALTAGISDANIYVTSAIPIDGSGALAGVYAAYAKNGNALNQKQVNAAQDEMNT LSGITQDNKNKKGYSDAQLNNAVAGAKNEMAKQGQNITDSQIRDIVNNQININHLGDTIN NNQKNQIVNLLIEIRDSGALKDGNFKQQASKLSSQIQNGAKNIFNKFNTQENRNWLQNLW DQIVKFFSGLFGGVILN >gi|227862541|gb|ACKR01000081.1| GENE 6 4940 - 5752 828 270 aa, chain + ## HITS:1 COG:BS_yveR KEGG:ns NR:ns ## COG: BS_yveR COG0463 # Protein_GI_number: 16080483 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 2 261 1 255 344 120 27.0 2e-27 MLQVPKLTIIMPVYNTAQYLPRAFDALLNQVDKSFKLLVVDDGSTDNSVKVAESYANRFP YFKIIKKKNGGPSDARNVGMQYLDTPYVTFHDGDDWVDPGYTSFFIHAFESHPDVSLVSC GYWMDYPDKKQRVVGRPEGGYLTRGETYLKLTNVFSSPMKGYSWNKAYKTAIIKKYHLKF DRDISLLEDQIFNVKYISVAKGVYYTQKPYYHYWQRKGSIIHQPNIKKVADNFRGNYRVW SKIISTMMKDREEEKMRKKLERQQALRDSE >gi|227862541|gb|ACKR01000081.1| GENE 7 5761 - 6415 537 218 aa, chain + ## HITS:1 COG:SMc04165 KEGG:ns NR:ns ## COG: SMc04165 COG0596 # Protein_GI_number: 15965747 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sinorhizobium meliloti # 4 201 29 261 287 91 27.0 1e-18 MKEKVNGVEIYYHKLGKGEPLLLLHGHHLDGGMFDKIVAPLSLYYTVYVLDMRGHGLSEG DIAEHYKTEVEDVYAFVKQVGIEGCYCFGFDAGGLVAMMLARKHPTIFKKMIVAGVFVNG AGIRPYHYLTEGFHRFLRLDRDSRVELTESFISVDDLKKITTPTLCVVGEKDWVKVEHVR WYSQFMPNARLVIMPRQTHDSYAVRSLKLLDLIKGFCR Prediction of potential genes in microbial genomes Time: Wed May 25 06:25:40 2011 Seq name: gi|227862525|gb|ACKR01000082.1| Lactobacillus crispatus JV-V01 contig00087, whole genome shotgun sequence Length of sequence - 17417 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 9, operones - 5 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 5 - 421 301 ## LCRIS_00113 hypothetical protein + Term 438 - 475 1.2 + Prom 423 - 482 6.8 2 1 Op 2 . + CDS 513 - 1499 1110 ## COG0462 Phosphoribosylpyrophosphate synthetase + Term 1528 - 1562 3.0 + Prom 1532 - 1591 6.1 3 2 Op 1 . + CDS 1664 - 2347 742 ## LCRIS_00123 transcriptional regulator 4 2 Op 2 . + CDS 2360 - 3184 688 ## LCRIS_00124 hypothetical protein + Term 3191 - 3234 5.5 + Prom 3203 - 3262 13.5 5 3 Op 1 34/0.000 + CDS 3311 - 4795 1299 ## COG0765 ABC-type amino acid transport system, permease component 6 3 Op 2 . + CDS 4788 - 5525 595 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 5526 - 5571 7.1 7 4 Tu 1 . - CDS 5561 - 6811 1166 ## LCRIS_00127 hypothetical protein - Prom 6928 - 6987 6.1 + Prom 6877 - 6936 5.2 8 5 Op 1 . + CDS 6964 - 8046 1395 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 9 5 Op 2 . + CDS 8074 - 8823 907 ## LCRIS_00129 transcriptional regulator + Term 8841 - 8884 4.6 + Prom 8829 - 8888 6.0 10 6 Op 1 3/0.000 + CDS 8914 - 10047 1213 ## COG5438 Predicted multitransmembrane protein 11 6 Op 2 . + CDS 10044 - 10829 656 ## COG5438 Predicted multitransmembrane protein 12 6 Op 3 . + CDS 10801 - 11622 796 ## COG0657 Esterase/lipase - Term 11870 - 11914 10.3 13 7 Tu 1 . - CDS 11925 - 14933 2648 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases - Prom 15182 - 15241 7.9 + Prom 15135 - 15194 7.3 14 8 Tu 1 . + CDS 15233 - 16387 1265 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase + Term 16408 - 16445 3.1 + Prom 17009 - 17068 4.7 15 9 Tu 1 . + CDS 17122 - 17268 164 ## LCRIS_00137 putative protein without homology + Term 17270 - 17316 -0.3 Predicted protein(s) >gi|227862525|gb|ACKR01000082.1| GENE 1 5 - 421 301 138 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00113 NR:ns ## KEGG: LCRIS_00113 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 137 1 137 137 114 59.0 1e-24 MWIVLLVNVIVAAVAVIFGFQNRVETLNLFNAGIVFITFGIVLLLGAIPVYQDFSTSSIL MFIAGILIIVRIIMLAVSLITKVPRTVNLQDIAISLMIAAVCLIYFMHGLNLSLSNLVVP ELALIIGIILFYFKRKRQ >gi|227862525|gb|ACKR01000082.1| GENE 2 513 - 1499 1110 328 aa, chain + ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 13 321 10 316 317 280 47.0 2e-75 MNKEELHQLLHPMKVIGLGGNPALNEKIAAILHQPLIETAVHHFSDGEIQVNIGESVRGC DVFVIQSIQDPVNENFMELEIVLDALQRASAHIINVVVPYLAYSRSDTKTRSREPITAKL VANLLQLTGMDRLITVDLHASQIQGFYNIPVDHLHAIPLLGQYFLDNGIATKEDDDIVVV SPDHSGAKLARNFGQYFNAPIAIVDQRGARYDTEVHDMIGDVKDKKCIIIDDLIDTGSRI SSSTKSVLAAGAKKVYVAATHALLSKNATGVLNELPIEQIVVTDTIKHKRYPDRMVRISV DQLLARGIDYVYNDRSIHQIFDEQNRLK >gi|227862525|gb|ACKR01000082.1| GENE 3 1664 - 2347 742 227 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00123 NR:ns ## KEGG: LCRIS_00123 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 227 1 227 227 434 99.0 1e-120 MARRKNMKRRRVILGNTFHLIRENGMDNVSLQMIAEKSGISKSLLQSYYPHKAKLTNDII RNLFNTLGQQVNNYDMANSNLPYARTKAFIYTIAILGMHDEGLDRIISEAFVSNATLDNW GIMLNEWIKENHLFDDINVDESELETGIAFVTSGIGRLYHDRKKHHLTAEALANYATSAL MFSFLHCSSEEIDQALKEGHEIIETADMEVVHRAIDTMFDEGKEIFS >gi|227862525|gb|ACKR01000082.1| GENE 4 2360 - 3184 688 274 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00124 NR:ns ## KEGG: LCRIS_00124 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 274 1 274 274 484 100.0 1e-135 MVEGKRADLRRMGYEQNNQYKRLLAFVIFLIAALSLITATFLNPIFMKKQIRTSYNRAVV VRQVNKNYDSLADLINADSEDNSNLLSDTQTQPIADHIIDYSLGIHWFKVTSLPLANQIL SDIDQGIAKGSSSGAQEVNRKLKKQGTNAPYAIIKAFNLSVITLGANIAGLLFIVNLIII IVTIITMVSLLNDMKSRATIRMVIHDTMAAGMWAGFWLILISGLLALVPVIFNVDNIEFG FLLEIGSSVFLEYVIAGVIIYIICAIPWQITAAK >gi|227862525|gb|ACKR01000082.1| GENE 5 3311 - 4795 1299 494 aa, chain + ## HITS:1 COG:lin2352_2 KEGG:ns NR:ns ## COG: lin2352_2 COG0765 # Protein_GI_number: 16801415 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 286 494 7 215 215 234 55.0 3e-61 MKKAKIIKTFLAFITMLSTLFLFNQPVNAANKEVETGSVMKKIKQSKELVVGTSADYPPL EFTTSENGNTKYVGVDIELAKDIAKDLHAKLVIKNMSFDSLLVALETGKVDMVISAMTPN PERKKSVDFSKIYYKPSGEYFLINKRDQAKYKKIKDFAGKTVGAQTGSIQYSLIQKQMKQ SKVKGLGKINNLVLALKSNKISGIVMEEMTAKAYQQNDNSLMAVRSDLREQQAGNAVAIA KGQNDLVAAVNKTINRVEQKDLINKKYLPEAAKYMKTAQKTNTMTKYIPYFIKGVGYTIV ITIFSVLIGIILGMLLALMRLSKNKLLHWIAVCYIEFIRGTPQMVQILFVYFGVGALISN LSAVVAGIIAIGLNSGAYVAEDIRSGIASVAKGQTEAARSLGLSQAKAYRYVIIPQALKN IWPALGNEFITLLKDSSLVSVIGVTELMYQTELIQTSTYRGVLPLFIAMIIYFIMTFTLT RLLNYFERRMKHND >gi|227862525|gb|ACKR01000082.1| GENE 6 4788 - 5525 595 245 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 244 1 242 245 233 48 5e-61 MTKMIDIQHLKKTFGKNEVLKDISAEVDKGQVICIIGPSGSGKSTFLRCLNVLERPTTGK IVFDGTDLASLKDGKELDQLREKMGMVFQNFNLFPNMNVIENIKLAPMKVKGVSEAQAEK TGLVLLEKVGLADRAKQFPASLSGGQQQRVAIARALAMDPEVMLFDEPTSALDPEMVGEV LKTMQDLANSGMTMVIVTHEMGFAREVADEVWFMADGYLQEKGTPQEVFEHPTSERAKDF LSKVL >gi|227862525|gb|ACKR01000082.1| GENE 7 5561 - 6811 1166 416 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00127 NR:ns ## KEGG: LCRIS_00127 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 416 1 416 416 750 99.0 0 MLLRKFSIAAAATLFIPLAGQVTQAATFTTQEVNEVHNFQKEYANLDKTSYSAANIYAKK PNLSKKFKVGRLDPKYIKTQTDYINYYRSLFSLPAISTTDTLNKNAQITAAVMAAINANP FINQHGLPSETKPSNISKFVWKLAKDTSETSNLNFNVSQQTAGDVITDLITDHYNLTGSD TGHRAWLLSSRLTTTGIGAAYGTNGYRYSVQKVLNINDTFRPASQPVVAYPSMRLFPIEL LQGKNIMWSLYLSDRTIKNKPTITITDLDTKVVTTAAHVKNYSSCGYGNFRTILTYSPAN TNLVAGHEYEVDVKGVQKYRFKLFKQDSTNDTTNYQVQQDTTNTPTNQATTNLNSETDVQ SPILLQNKILRAVIIPKATALPNNQNTFFNALIQKGWHQNFFVRQYVLSNPIITDE >gi|227862525|gb|ACKR01000082.1| GENE 8 6964 - 8046 1395 360 aa, chain + ## HITS:1 COG:ECs0431 KEGG:ns NR:ns ## COG: ECs0431 COG1181 # Protein_GI_number: 15829685 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Escherichia coli O157:H7 # 3 348 2 353 364 301 44.0 2e-81 MTKKLQVGLIFGGNSSEYEVSIVSGRNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVL DDPSYQVKNPHKVNNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMDKPFVGDD VLGAAVTMDKEFTKILAQRVGVPVADWISIKRFEYDDKKNAKLNYEKVAEKLGRDMFVKP SNQGSSVGVSHVTNADEYTAALKEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQ ITNAKGSFYTYENKYDDNSTSKLQIPADLPQEIIDTVRENARKVYAATECSGMARIDSML TPGGKVVLTEVNALPGFTNISMYPKLFEEAGVPYSELITRLIEAGMDRFDHKKTLLHKHD >gi|227862525|gb|ACKR01000082.1| GENE 9 8074 - 8823 907 249 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00129 NR:ns ## KEGG: LCRIS_00129 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 249 1 249 249 375 99.0 1e-103 MTTNKHDFEELAAPKAAAQELGISVATLRKYSLIVEKVTGKSDYFARTKQKARLYHQKDI DDLKAFHRLSKNSGLTLQEAALQIYAVSEKKPEPETKEPAPKPAYNSTDVMDTEQVVKLL NTLQKTISNQNEAINSLQKQLNVIQKQNQDLIEAQKQLAAPQDDLDKFAALPDISGIVSA DEPKPKSEEEKRAEVKKDMNKSQEQMHDEIMSKAKENAKKRATSNVHRTLEDMQLTDQKE HWWQKIFKF >gi|227862525|gb|ACKR01000082.1| GENE 10 8914 - 10047 1213 377 aa, chain + ## HITS:1 COG:SA0428 KEGG:ns NR:ns ## COG: SA0428 COG5438 # Protein_GI_number: 15926147 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Staphylococcus aureus N315 # 15 350 20 352 370 163 30.0 5e-40 MKFKWKKRYTIAVIVAIVGALLTVLSYFATDIYHKDDVAVITDSKIKDTLIEKSEDVYKN ADETRQQILHLKVLSGKHKGETYTTKNVYYPSQLTTQKYRAGQRIFVNIKKGDPAIVNPK RDWVLVLVVTITLALMVAAVGKHSLSLVVSMVISWLIFYLIIIWDVHLNGAHIILLFGLA DIVFSFFSLLIVQGLNKKMLATWLATLLGVFVSFALCYVIMKLTGESEMKYETGDYATQD PRGLFLAQTLIGILGAVMDEATDIISSLYELIQTKKNITMRQLIHSGRTMGQEIMGPLIN VLVLIFIAGALPETILYLRDNNTLASTFGFTLSLGATQSVISAIGIVLTVIFATGCSLFF LKKRDWKSLFKKEGENK >gi|227862525|gb|ACKR01000082.1| GENE 11 10044 - 10829 656 261 aa, chain + ## HITS:1 COG:L17781 KEGG:ns NR:ns ## COG: L17781 COG5438 # Protein_GI_number: 15672790 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Lactococcus lactis # 23 249 23 249 253 108 28.0 1e-23 MSTLFALIVVLAILMTIVGGETGIRSFFSVLINTILLILVAMLISWGINIAILTLIFIPL KLVTIIFLGTHDYTVAKNSFYSSFLVCLIISLFILGCQYLAQAAGLGPEAGELLVGLSQM PGLSYPMIAVTVAIFSTLGAIAEAAVAMSSGLLEIKKHNPAIGEEELMASGTVIGNDVLG TAMNTILFGMFGSFLSLFLWYFRLHYTIGEVLNEKLFVNEALIIMYSLIGVILTVPLSSF MLSRGMSKKGPKHESRKSDAD >gi|227862525|gb|ACKR01000082.1| GENE 12 10801 - 11622 796 273 aa, chain + ## HITS:1 COG:CAC2917 KEGG:ns NR:ns ## COG: CAC2917 COG0657 # Protein_GI_number: 15896170 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Clostridium acetobutylicum # 31 273 34 272 272 146 35.0 4e-35 MRVENLTLTNFNNREYQVHTYALEPNPELVEQKRPLAIVVPGGSFNHLSKREGEPVALAF NNQGFNSVVMEYNLVQDPDKIYPDAGLDVLSTVKYFRDHADEYQLDKDKILTVGFSAGGH VVSVANNMALNKNYQTKYDFDKTDVLPNKTILGYPLIDIKKIGFPIPEDQKAKMPVEEEI LDSALGVTRETSDTFIFQAWDDPVVLIGNSIEYIGALNKNKDSAEAHLFNHGYHGFSLAR HNVETKGQDWQDNPHAAHWFNLAMEWLKSEWGE >gi|227862525|gb|ACKR01000082.1| GENE 13 11925 - 14933 2648 1002 aa, chain - ## HITS:1 COG:PAE1968 KEGG:ns NR:ns ## COG: PAE1968 COG1501 # Protein_GI_number: 18312999 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Pyrobaculum aerophilum # 389 663 402 660 684 118 31.0 6e-26 MTQNQIERHQLGQLIGANKRDHYYELHYSTGDIVRLYILADGIFRYFLDPAKKFDENHSS FVDLSQFNNDYFEKSQPKATSDSLIIKSGNYQLIFQQKPAVMSIFDETLHRNRLVQLSPL ELGNDQTTEILKQHKNEFYFGGGMQNGYFSHKGEIISIKRDKITGKGGVLTQVPFFWANS GFGELRNTESAGNYDFGKSNPDATILKHDTNMFDTFYLLGNSPKNILAKYYMLTGKPLMP PKYALGLGHVGNFLTTLWQPGKAKERNAVMFEDGNYYTRTNKPEDASGKGSLNGEEEYQF SARAMVDRYQKQHFKLSWIVPNYDVQEINEEAMASFSEYAAIHDVSAGLWSQNNTPKASP DTTFIQTDTTDPKVLKNDALILRNNLKRKRPLIFSNTGIAGSQNRTMLAFGDIGGNWENI PTQVAGFLGASLSGQPLVGSAVDGTAGGGNAQIAIRDFEWKAFTPILFNLDDQGKFSKTP FAYNSKMTQINRAYLKLREQLQTYLYTLIYRAQVGEPILRPLFLEFPHEQVNYTPQVGHE FMLGPNLLISPIVNGREDGNGNSRKDNLYLPNHRTMWVDLFDGKKYLGGRVYNKQSYPSW HLPVFVRGGAIFDLGERNYVLYPQGKSKMVTYDDNGYNDYSRNHVATQITSDLEASKLTI TIDPTQGDFNTFQTENTTNLNIMCDGYPDGLTVKINDKEIPMQEYGTVDTFAHAKEGFFF NTNYSWMPEFDQYQEKKQTALQIKLAKRDITDSKIEITIRNFRYGNETLVHAITDSLLRS PKQPMVDPDKISSHSLTVVWPQLTDQVQIEVNGILHDGIDGNSFTFHELVPNTRYTLRLR YVAGNKVSEWSDPFGAITKPDPMNYAINDIHVTSSLASPKDHPIDYLTDLKLASEWETID GVSEDKPLELNFTFNHLEHLSRMGWVPRKIDHQGDPVEVSVELSSDGVNFKPYGDHLTWK SDSKNKVVGLRNVDAKAIRLKVYKSSGPFVAAKEVIFFRDKK >gi|227862525|gb|ACKR01000082.1| GENE 14 15233 - 16387 1265 384 aa, chain + ## HITS:1 COG:SP2056 KEGG:ns NR:ns ## COG: SP2056 COG1820 # Protein_GI_number: 15901876 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Streptococcus pneumoniae TIGR4 # 1 384 1 383 383 389 51.0 1e-108 MTYYIHADKFFLENRTENGGYLEVQDNGKFGFFYPESKKPEGKIVDYAGKWVAPGLVDTH IHGSLREDVMKSDWEGINKISKGLLSAGVTSWMPTTITAASDTLTRICKMFADHQGQEEG AKIQGIHFEGPFFTEEHAGAENPKYMMDPDINEFNKWLDASNGMLKKISMAPERKGSKEF IREAVKEGIVVVLGHSSASFEEAVAGVEAGATMFTHTFNGMPDPSHHTPSISNAAMTLNN VTDELICDGHHVQPCMAKTLINAVGPEHIALITDCMEAGMMPDGDYMLGELPVYVKDGMA RLKDGDNLAGSILQLKQAVKNVVDWNIVTPEKAVMMASYVPAKSAHILDNCGTIAPDKDA DFLILNPDLTLSETYLNGESRYKA >gi|227862525|gb|ACKR01000082.1| GENE 15 17122 - 17268 164 48 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00137 NR:ns ## KEGG: LCRIS_00137 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 7 48 57 98 98 61 76.0 9e-09 MTTDSINFKIDAESKKVMIKELAIINGLIPDDDNTVDNLNDYFKNLGI Prediction of potential genes in microbial genomes Time: Wed May 25 06:26:02 2011 Seq name: gi|227862517|gb|ACKR01000083.1| Lactobacillus crispatus JV-V01 contig00088, whole genome shotgun sequence Length of sequence - 4284 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 5, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 383 - 417 2.0 1 1 Tu 1 . - CDS 464 - 940 600 ## LCRIS_00141 nucleoside deoxyribosyltransferase - Prom 965 - 1024 5.5 + Prom 908 - 967 5.7 2 2 Tu 1 . + CDS 1055 - 1552 659 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) - Term 1531 - 1564 1.1 3 3 Tu 1 . - CDS 1570 - 2373 955 ## COG2365 Protein tyrosine/serine phosphatase - Prom 2407 - 2466 6.6 + Prom 2312 - 2371 4.7 4 4 Tu 1 . + CDS 2523 - 3017 610 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 3026 - 3072 6.3 + Prom 3065 - 3124 5.4 5 5 Tu 1 . + CDS 3361 - 4282 1116 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component Predicted protein(s) >gi|227862517|gb|ACKR01000083.1| GENE 1 464 - 940 600 158 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00141 NR:ns ## KEGG: LCRIS_00141 # Name: ntd # Def: nucleoside deoxyribosyltransferase # Organism: L.crispatus # Pathway: not_defined # 1 158 1 158 158 312 99.0 2e-84 MAKTKTLYFGAGWFNEKQNKAYKEAMEALKQNPTVDLENSYVPLDNQYKGIRVDEHPEYL HDIEWASATYHNDLVGIKSSDIMLGVYLPEEEDVGLGMELGYALSKGKYILLVIPDGDYG KPINLMSWGVCDNAIKISELKDFDFNRPRYNFYDGAVY >gi|227862517|gb|ACKR01000083.1| GENE 2 1055 - 1552 659 165 aa, chain + ## HITS:1 COG:CAC2958 KEGG:ns NR:ns ## COG: CAC2958 COG1762 # Protein_GI_number: 15896211 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Clostridium acetobutylicum # 5 158 7 158 164 110 39.0 2e-24 MTNQNLFAPDAVFISNQTKQDLVFKEVYEHLRESGYVKGNFLHHIVEREHNFPTGLDTAT LGKNIPNIAIPHTEGEFVNTRLIVPVALKTPVTFHNMINPSQAIEVKFLFMLLDNDPDGQ AALLAQVMDFLANTPANELREVFNFTDPSAIYAFLEQKFGKKKED >gi|227862517|gb|ACKR01000083.1| GENE 3 1570 - 2373 955 267 aa, chain - ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 17 265 53 297 298 144 36.0 2e-34 MTKKLTNQLIGVTSGRNFRELGGYETMSGKKIKMHKLLRTGNLADLSPFDKQFLTDYGVK YDVDFRSKEEVDNQPDRVPDGVEYIYDPVFSEDLTNSSKSLTDLDTQAHDDADFGFNHMH YAYEDMIESEPAQKAYRKFFDVLLENTVDGESVIFHCTAGKDRTGFGALLALSALGVPLN TIKKDYLLTNITTKDFVDSMVEHARQNGKNENVLQSIRDIQSVRSEYLDHAVKVLNDEYG GINNYLRDVMKLSSADIMKLRNIYLED >gi|227862517|gb|ACKR01000083.1| GENE 4 2523 - 3017 610 164 aa, chain + ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 7 152 6 147 152 103 43.0 1e-22 MTDKTKESILVPVDGSESAERAFDKAVKVGLRDGAHVDVLNVIDTRQFMGEMQDTLISGD TIYQMTQDSEEYLKSLKKWAHDNFGFDDVDYHIRYGSPKRIISYDFIKDHHNTLIVMGAT GLNAVERMLMGSVTEYVNQHALADVLIVKTDMGNNPLKPTMKKN >gi|227862517|gb|ACKR01000083.1| GENE 5 3361 - 4282 1116 307 aa, chain + ## HITS:1 COG:SA0138 KEGG:ns NR:ns ## COG: SA0138 COG3221 # Protein_GI_number: 15925847 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 305 1 315 318 333 59.0 2e-91 MKRFRRILVAVVALLVAVVATACSNKSNSSKGGYTPKSLTIQFVPSQAATKLQARAKPLE KMLSKRLGIPVHVSMSTDYNTVVEAMKSKKVDVGFLPPDGYVLAHKQGAADLLLQAERYG VKQPGGKATNQLVKSYRAEILVKKGSKIKNWKDLKGKSISVQNPTSSAGYVFPVAELKQK GLDVTKSCKLVTVTGHDQAVLNVLNGDTDAAFVFEDARNIVKKDNPKIMSQVVPIYFTKP IPNDTISVIPSMSKSFRKKLAKAFISVAKSKEGKKVIESVYSHEGYAYAKDSDFNVIRKY DKIVEST Prediction of potential genes in microbial genomes Time: Wed May 25 06:26:07 2011 Seq name: gi|227862513|gb|ACKR01000084.1| Lactobacillus crispatus JV-V01 contig00089, whole genome shotgun sequence Length of sequence - 2434 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 9/0.000 + CDS 18 - 791 343 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 2 1 Op 2 8/0.000 + CDS 791 - 1582 1048 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component 3 1 Op 3 . + CDS 1582 - 2394 1015 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component Predicted protein(s) >gi|227862513|gb|ACKR01000084.1| GENE 1 18 - 791 343 257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 6 245 1 229 245 136 35 1e-32 MADKPMIQLKDVSKIYDNGTVGLKGINLTINKGEFVVVVGLSGAGKSTLLRSINHLHDIT SGDILIDGKSITSAKGKNLRKLRRDIGMIFQNFNLVKRSSVLRNVLVGRVAYYPTWKTTF NLFSKEDKQKAYEALQQVDLADKVYARADELSGGQQQRVAIARVLMQNPKIILADEPTAS LDPQTSVRVMNDLKMLNEKYGMTVVANLHSIELAQQFGERVIGIRAGQVVYDGKMKDTPK SVFTNIYNGGNGSEEDE >gi|227862513|gb|ACKR01000084.1| GENE 2 791 - 1582 1048 263 aa, chain + ## HITS:1 COG:SA0136 KEGG:ns NR:ns ## COG: SA0136 COG3639 # Protein_GI_number: 15925845 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Staphylococcus aureus N315 # 1 261 5 265 266 208 48.0 8e-54 MPEQVNQLPKRKFKVMNLVWTIIMIAGLFISINVTNTHISVLFENWNQFADIFIQMSHPD WSYLNVVWPKLIETIKMAVLGTVIGSVVAFIYSLLIARNIVKNKAVTGILRVIMNIVRTI PDLLLGAIFVAIVGIGPVAGILALAVFTFGVVVKLFYEAIETIDPGPIEALTAVGANKLQ IIHYAVMPQIITYFISYVLYAFEINVRASTVLGYIGAGGIGLNLQQTLQVFNYAQTGTII IVIIVVVVLIDYVSSKSREELMK >gi|227862513|gb|ACKR01000084.1| GENE 3 1582 - 2394 1015 270 aa, chain + ## HITS:1 COG:SA0135 KEGG:ns NR:ns ## COG: SA0135 COG3639 # Protein_GI_number: 15925844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Staphylococcus aureus N315 # 15 270 16 271 271 221 53.0 1e-57 MDTTMKKLPAKPVDRKKQVAHWLIAIATIVIIVWSCTGINFGGIKATAGQIAGAIFSGIF HPDWSYVYNGSGEDLVSQLWQTICIAFLGTFISAIISLPFAFWAAHTKHKHWYTSRIGKI VLAIIRSFPEIVLALMFIKAVGPGSAAGVLALGFHSVGMLAKLFSEAIENLEEGPNEAVI AAGGSKFHVIMFSTMPNLMPALISNTLYRFDVSIRSASILGLVGAGGIGYPLIIALQYRQ WDRVGIILLGIIIMVVIIDWISGWIRKKLV Prediction of potential genes in microbial genomes Time: Wed May 25 06:26:07 2011 Seq name: gi|227862511|gb|ACKR01000085.1| Lactobacillus crispatus JV-V01 contig00090, whole genome shotgun sequence Length of sequence - 947 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 53 - 916 442 ## lhv_1982 transposase Predicted protein(s) >gi|227862511|gb|ACKR01000085.1| GENE 1 53 - 916 442 287 aa, chain - ## HITS:1 COG:no KEGG:lhv_1982 NR:ns ## KEGG: lhv_1982 # Name: not_defined # Def: transposase # Organism: L.helveticus # Pathway: not_defined # 1 280 24 303 306 402 68.0 1e-111 MIGENKVFDQRTIAGQRRMLARTKGTDVMVNLIDQAMKAGHQAKYVLFDSWFSNPHQIVQ LKQRKLDVIAMVKVSSKIKYEFEGERKNIKQIYRSCKKRCGRSRYLLSIPVKVGRQDKDG AKIDARIVCVRNRANRKDWLAIICTDMSLSEDEIIRNYGKRWDIEVFFKTCKSYLKLSTE YHGLSYDALTAHVAIVFTRYMLMSVAKRDDEDERTLGELFYCMIDELADITFSHSLQLIT DAMLASVKQVFHASEAQIAEFTADFINRLPKYMQKLLKKTSKNNIEA Prediction of potential genes in microbial genomes Time: Wed May 25 06:26:11 2011 Seq name: gi|227862509|gb|ACKR01000086.1| Lactobacillus crispatus JV-V01 contig00091, whole genome shotgun sequence Length of sequence - 1031 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 10 - 900 321 ## lhv_0676 transposase Predicted protein(s) >gi|227862509|gb|ACKR01000086.1| GENE 1 10 - 900 321 296 aa, chain + ## HITS:1 COG:no KEGG:lhv_0676 NR:ns ## KEGG: lhv_0676 # Name: not_defined # Def: transposase # Organism: L.helveticus # Pathway: not_defined # 103 296 1 194 194 355 87.0 1e-96 MVIQPRQKMDEREAALTMLKKLAQQEKDFLVLMDRGYISFNLIENCNRLKHCHYVMRSKS GDGAFKEIVAMSNHEYDIDLSCRVTSSHYYYVTHKDTEKFLHLILHKKHHYKAVRSKNTR DQRWDFEDMCDVRFRVCKFRINPPGSDDEWEVLITNLYRNEYPLARMKEIYHLRWGIETS FRELKYDLSGIQFHSKKDQFVYMEIYAHFAMYNAVSLSIIASSKPYTQGKYQYQIDFKMA CCIWRRYFSISDNSDKNFTQLLLDVAFYLTPIRPGRKDKRNLKVKLVVGFPYRLAA Prediction of potential genes in microbial genomes Time: Wed May 25 06:26:19 2011 Seq name: gi|227862498|gb|ACKR01000087.1| Lactobacillus crispatus JV-V01 contig00092, whole genome shotgun sequence Length of sequence - 12453 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 5, operones - 4 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 23 - 592 372 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) - Prom 666 - 725 8.2 + Prom 613 - 672 7.2 2 2 Op 1 . + CDS 751 - 1236 697 ## LCRIS_00151 hypothetical protein + Term 1244 - 1280 3.8 3 2 Op 2 . + CDS 1293 - 2690 1461 ## LCRIS_00152 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase + Prom 2727 - 2786 5.5 4 3 Op 1 1/0.000 + CDS 2827 - 4776 2160 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) 5 3 Op 2 . + CDS 4798 - 6081 1383 ## COG3919 Predicted ATP-grasp enzyme + Term 6090 - 6124 2.0 + Prom 6170 - 6229 5.8 6 4 Op 1 12/0.000 + CDS 6255 - 8462 2313 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase 7 4 Op 2 . + CDS 8462 - 9175 626 ## COG0602 Organic radical activating enzymes + Term 9187 - 9221 2.0 8 5 Op 1 . + CDS 9227 - 9805 565 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 9 5 Op 2 1/0.000 + CDS 9798 - 10994 960 ## COG2461 Uncharacterized conserved protein + Term 11001 - 11041 2.3 + Prom 11020 - 11079 5.8 10 5 Op 3 . + CDS 11111 - 12328 1056 ## COG0477 Permeases of the major facilitator superfamily + Term 12335 - 12381 7.3 Predicted protein(s) >gi|227862498|gb|ACKR01000087.1| GENE 1 23 - 592 372 189 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 7 183 3 179 185 147 41 3e-35 MNQEIIRCPWGDTKDEAVQEYHDHEWCKLNLDESHLYEMLVLELFQSGLSWSTVLHKRNN FKAAFKNWQISEVAKMTDKDIESLMQNKGIIRNRMKINAAVKNARAFLAIEQKYCSVAKY LQNFVPTPIVHDIASFDDVPASNDLSQKISKQMKKDGFSFVGPVVIYSYLQGIGLINDHL NQCQFKFHG >gi|227862498|gb|ACKR01000087.1| GENE 2 751 - 1236 697 161 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00151 NR:ns ## KEGG: LCRIS_00151 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 161 1 161 161 271 100.0 4e-72 MEKLDTMMLADDLALSQDKILNGEQDFGAEAVYKVIDNLGVLNNPIKDYFDMTEEQYYEA ESDHKLTLIKMDSKLTDLHDRILTNHVDGFVDKDEINLTYNHENPYEDDLYDPTTDYREI VYSLKVIGAVQAIAAKDLQEVLSKDAVLSIGLAAYALAHNA >gi|227862498|gb|ACKR01000087.1| GENE 3 1293 - 2690 1461 465 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00152 NR:ns ## KEGG: LCRIS_00152 # Name: not_defined # Def: 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase # Organism: L.crispatus # Pathway: not_defined # 1 465 1 465 465 889 98.0 0 MNLFKHTKGIVDRIVGAKKRSAMDKDSELLDPMQKYTTVGEYHVGAVDGTPHGKDYVLTV YQDEDGVLRQALSPETTTKLAPEYLRKYNAKLGHFRAFHNKKTGRRYWVENYLDNFTTEV KKHIRPGTNSVNIGVITDTHFKDKDSSDFYGFNGLQHVQEFSYLDQSGLLDLKVHLGDWI DGSDAGLVSESELVKLNKSFKSDQVPYLSIKGNHDENDKFDEHHDLKASFPENEFENIMW PDMYRQRGIHYVSRQHGVAYFDLDDVRVISVNTSDVPYELNNRGQKRYDNKIVLAVREDQ IEEIIEILANSSNKKIIFMSHANPINRKGSNALKYNGRSLHELLVAFNQREKGRMHASNG VPAEFRLSNSFDFTNIKNARIIAYFCGHRHREYQYRINGIQYILFNCSALMGPNHSLTTK YNKNLDRRIDQNNEFAGYIVNVDLKRHRIQSFGYGAASRRRVYFI >gi|227862498|gb|ACKR01000087.1| GENE 4 2827 - 4776 2160 649 aa, chain + ## HITS:1 COG:L0095 KEGG:ns NR:ns ## COG: L0095 COG0367 # Protein_GI_number: 15674210 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Lactococcus lactis # 1 624 1 615 625 635 49.0 0 MCGIVAFYDPKINEKQAVIGKMMATIKHRGPNSDGYYTNDEVALGFRRLSIIDLRGGAQP IYNEDKTRAIIFNGEIYNFKPLREQLIKAGHTFTTKADTEVLLHGYEEWGMDGLLKKVRG MFAFLIWDDNNKTLYGARDFFGIKPMYYSNQDGHLLVGSELKSFLEYPKFKRELNVEAVK PYLMNQYNDLEETFFKGVYRFPAGHWFEYKDGEMKTHQYWDAEYKENSLSFEETLKRIND DLKETVDLYRIADVKVGAFLSEGIDSSYLTTLLNPDDVFSVSFDDSTYDEASKAKALADI NHWKFYSDKVDADEAMRDFPEMQYHMDEPDANPSIIPLWYLCKLARKHVTVALSGEGADE LFAGYVNYGMHTHNDIIKVFTSELKKLPEKKRVKLAHKIKRMPNFPGKVHMYTNLAEPSE FYVGQSVIYDMDYPTIFTSKDANSILQPTYRNKLTVNGIYQKDFKKVKGVDNVKQMQYID LHHFMLNDIEQKADKISMAHSLEVRVPYLDKKIAELANSIPTKYLVNRHDTKYALRKASE KVLPDEWAKRPKLGFPTPIKQWLKEPRFYKQVHALFEEEFVNDIFDQKKIIKLLDDNYEG DGSHRRQIWAIYTFLVWYKLFFVDYENTVKKYQHVQPEVAKLISQGKLL >gi|227862498|gb|ACKR01000087.1| GENE 5 4798 - 6081 1383 427 aa, chain + ## HITS:1 COG:L93420 KEGG:ns NR:ns ## COG: L93420 COG3919 # Protein_GI_number: 15674209 # Func_class: R General function prediction only # Function: Predicted ATP-grasp enzyme # Organism: Lactococcus lactis # 2 410 4 406 408 415 52.0 1e-116 MSKKFTPILLGSDINVYGMARSFNEAYGIKVKALADVQLAATRYSSIVDVELHHGFSSDP TFMDVMHKKMEEYKNHEEPVILIACGDGYAELLSKHQDELKKVFIVPYIKYDLLEKLISK EGFYEIAEEYGLPYPKTKIITMDDYKSGKYEDVPFDFPVELKPEDPVSWLKCQFEGRKKT FAIQDKAEFKDIVTKIYTHGYNADLILQDFIPGDDSNMRTLNAYVDKNHQVKMMCLGHPL LEDPTPQSIGNYMAILPEYNEKLYEEVQQFLEKLNYTGMANFDIKYDPRDGEFKFFEINL RQGRSSFYVTLNGYNLAKWYIDDYVEDALKDKETVYGNKLESKYKLWLGVPKKIFNNYAY DNDYKTTADELIREGRYGTTVFYDKDRNFKRWLLMKYMFHNYFKRYKTYYEVNKGKIFDE ENKKLNK >gi|227862498|gb|ACKR01000087.1| GENE 6 6255 - 8462 2313 735 aa, chain + ## HITS:1 COG:SP0202 KEGG:ns NR:ns ## COG: SP0202 COG1328 # Protein_GI_number: 15900138 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Streptococcus pneumoniae TIGR4 # 17 717 12 722 735 937 63.0 0 MLKEEFNQQNVTKFNTPKTFVKRDGSKYPFAIFKLNMVLHNLDLDNVAPAVIEKIVAKLD AADEVNAQDVAVAFRDSLNELGYLDEAKAYVQYRKHDEEEWIKQTDTRARLKRMVNGDPT IVNENANKDSEVFSTQRDLTAGTVGKTVGLTMMPEHIAKAHLRGDIHWHDLDYTPLSPMT NCCLIDFKDMLTNGFKIGNAYMTSPNSINVATHQVTQIITNVASSQYGGCSFDRADEVLA PFAEKNYQKHLKDAGKFIDDPEKLEEYAKSQTKKDIYDAMQGLEYEINTMFSSQGQTPFT TLGFGLGTSWIEKEIQKDILRIRIKGLGRERRTAIFPKLVFTIKKGLNLHPGDPNYDVKQ LAIQCSTKRMYPDVLMYDTIKKITGSFKAPMGCRSFLQGWKDENGKEVNSGRMNLGVVTV NLPRIAMESHGDKKLFWEIFNTRMRTCHQALAFKGRRAIQAKPENAPIMYQYGVFGKRLK PGDDVNELFKNGRATISLGYIGLYEVGTVFYGPDWEHNEEAHDFTIEIVKKMHDLCAKWE KEDPYHWHYSLYSTPSESLTDRFCRLDTAKFGKVKDITDKEYYTNSFHYDVRKHPTPFEK LTFEAPYPYYAAGGFIHYCEYPNLKQNPAALEAVWDWAYDKVGYLGTNTPIDKCYKCGFA GEFKSTAKGFECPKCGNHDPATCDCVKRTCGYLGNPLKRPMVHGRHEEIVHRVKHMDFGM EDSLATEEEVKNGEY >gi|227862498|gb|ACKR01000087.1| GENE 7 8462 - 9175 626 237 aa, chain + ## HITS:1 COG:SP0205 KEGG:ns NR:ns ## COG: SP0205 COG0602 # Protein_GI_number: 15900141 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Streptococcus pneumoniae TIGR4 # 54 235 3 183 196 263 69.0 2e-70 MPEKDKNTQEGPDIRSNLIKVNMGGDTMFVDPDQYKPQLDHQRELKRMHRKPKNPKPQEW KTEDYSKHKIADYKPFNFVDGEGVRCSLYVSGCLFDCPGCYNLAAQNFNYGFPYTQELED RIIKDLGQPYVQGLTLLGGEPFLNTWVCLRIINRIRKEFGHSKDIWSWSGYTWDELQKET PDKKEMLSKIDILVDGRFMNDLKDLTLQFRGSSNQRIIDVPKSMKAGKVVIWDKLQK >gi|227862498|gb|ACKR01000087.1| GENE 8 9227 - 9805 565 192 aa, chain + ## HITS:1 COG:SP1074 KEGG:ns NR:ns ## COG: SP1074 COG2151 # Protein_GI_number: 15900943 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Streptococcus pneumoniae TIGR4 # 4 103 9 108 109 97 50.0 1e-20 MEEKNIKQVDQIMTALTQVIDPELQVDVVNLGLIYGIDIEGDKATIKMTLTIMGCPLSDY LERHIQKAVLSVAGIKSCDIKLVWYPVWTTERLSSAAKKQLGVTNHDDQIKQEKATKEKI IDFSVPIKKMADEYPDFVQIMYDCGFTRIKIPGLLKTVGRVMTIPLGAQAMKLDLAKVKK AFEDKGYKVIND >gi|227862498|gb|ACKR01000087.1| GENE 9 9798 - 10994 960 398 aa, chain + ## HITS:1 COG:L52568 KEGG:ns NR:ns ## COG: L52568 COG2461 # Protein_GI_number: 15673592 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 2 396 8 443 490 310 40.0 4e-84 MTDKKRQDAILKILHYIQNGGDFATAKKMFQEEFDQVDVAEITAAERELIKQGLNPAEIQ YLCNVHADVFKGNIKENAVNPDFATPGHPVHTIKLENMVLKSLVNDALLPDLKKYQAGQD TLDKIRKELSDLATIDKHYRRKETSLFPLMNKYGITAPPEVMWGVDDDIRDLIGDASKIA GEEHPDKDQLAEAIKKASHEVLEMIFKEESIMIPMIDEVADQDDWYNVKREESQIGYTLI RKPMNWKPKEAKKEAGPISVSNLSSFLINFEEGRLNLEQLNAILDMLPFALTFIDEHDKV AYFGGGAEIYPHSRNAIGNDVFSCHTAKSRPLIKKIFAQFHSGEVDKYEFHFTPHKMKRC LYLRYYAVRDKNGKYLGCLEVAQDVTEIRSWTEEKKKI >gi|227862498|gb|ACKR01000087.1| GENE 10 11111 - 12328 1056 405 aa, chain + ## HITS:1 COG:SA1580 KEGG:ns NR:ns ## COG: SA1580 COG0477 # Protein_GI_number: 15927336 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 17 375 9 364 393 194 31.0 3e-49 MRTAHGKQPADEIKLHWLLLGQLLTWLGSSFIWPLTSVYLHDHLGVSLALVGVVLLFNCV ANMIGSFISGWCYDHMDPYVLLIVGAALDAAVLFGMALNHSWPLYWLWMTLTGFLGGWNG ALINSIATSIKSKPGRYVFNMIYFAQNVGVVCGTLAVGYLYDYSVTLLFVIAGLLFVGVC VNAIINYRPMIQFHKERLANKGESKKKTFEPMPKYNLIMSIGFFVTIAVIWLMYMNWESN LSVYMVSLGIPFHLYSLLWTINAGIIVIVQAILSRFTIFKSLFRQILFGTLMFAISFVTL IFAKDFAHFALSMVILTLGEATAMPSIPTYVNDLSPDSSKGKYQGLTLSASSIGRALGPL FGGLIIEDFGYIQFFAVAAIGIFLLLVMLIPMHAKLQKKLKLFVK Prediction of potential genes in microbial genomes Time: Wed May 25 06:26:29 2011 Seq name: gi|227862495|gb|ACKR01000088.1| Lactobacillus crispatus JV-V01 contig00093, whole genome shotgun sequence Length of sequence - 4226 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 24 - 83 2.8 1 1 Tu 1 . + CDS 141 - 1907 2201 ## COG3590 Predicted metalloendopeptidase + Term 2039 - 2084 12.3 - Term 2036 - 2062 -1.0 2 2 Tu 1 . - CDS 2123 - 4096 2069 ## COG3158 K+ transporter - Prom 4126 - 4185 5.8 Predicted protein(s) >gi|227862495|gb|ACKR01000088.1| GENE 1 141 - 1907 2201 588 aa, chain + ## HITS:1 COG:SP1647 KEGG:ns NR:ns ## COG: SP1647 COG3590 # Protein_GI_number: 15901483 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Streptococcus pneumoniae TIGR4 # 12 588 54 630 630 449 42.0 1e-126 MQDFADFAAGKKELPTVPNFKKAVELYKVAKNFDKRNADGAAPIQADLHEILDLRNFADF NLKAADFYKNGFAVPFAFSVEADMKNTKIHSLNFGGPSTFLPDTTTYKTPAAEKLLDVLK KQSIKLLTMAGLDEKDAEDYADLAIKYDAKIAKVVKSTEEWADYPATYNPVSLTDFEAKF DSFKMDYFLGGLFTKKPERIISTEPRYLDHAEELLNEENFAEIKAWMLVKFINGVAYSLS QDFREAAFPFSQALSGQPELSSGVKQAYHITNGDFGEVVGVYYGQTYFGAEAKADVTDMI HKMLDVYEKRIRENSWLSQATKDKAIVKLRALILKIGYPDKIEEIYDRLQVDPTASLYEN EVQFGREQIKYNLEKLYQDVDRTVWLMPGDMVNACYDPQRNDLTFPAAILQKPFYDLKQS RATNYGGIGVVIAHEVSHAFDNNGAQFDEFGNMKNWWTDEDFAEFKKRTQAEIDLFDGIE YGPVTLNGKQIVSENIADQGGLTAAVEANKGEGGDKKAMQELFENFARVWTTKQLPESIK TQVSIDVHAPGPERANVQSQCQEEFYKAFDVTENDGMWLAPEKRVVIW >gi|227862495|gb|ACKR01000088.1| GENE 2 2123 - 4096 2069 657 aa, chain - ## HITS:1 COG:SPy1414 KEGG:ns NR:ns ## COG: SPy1414 COG3158 # Protein_GI_number: 15675333 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Streptococcus pyogenes M1 GAS # 7 651 11 647 666 655 52.0 0 MNNKAKRMSAAGLLIAIGIVYGDIGTSPLYVMKSIVEGNGGIGNVNRDFIIGSISLVLWT VTLLTTLQTVIIALKATNHGEGGIFALYTLVRKRAKWLVLPALIGGAAILADGTLTPAVT VTTAIEGLKGLNFGGNVPVSTQNMVIAITVVILLVLFSIQKMGTSIIGKAFGPIMFLWFT FLGVMGVMNMVGDWSILQAINPIYAIRLLVSPYNKAGIFILGSIFLATTGAEALYSDVGH VGKSNIIGSWPFVFVCLSLNYFGQGVWILNNPTYRPADGGVLNPFFEMIPANIRLFAIIL ATIAAVIASQALITGSFTLVAEASGLKFLPRMNINYPSNEKGQIYIPSINKGICVATIAI VLYFQTSAHMEAAYGLSITISMLMTTILLYEWLVMKKVNTVWNWIFLIFFGVLDIMFMIS SLTKFTHGGYVSLFIAGAIGFIMYVWYYGNKVRDKREARNAYVRLDEYTDMLTNLSHDEN YPTYATNLVYMANVKYNKFIKREILYSILDKRPKRAKAYWFVTVNVTNEPFTAEYAVNTY GTKNVINIQLYLGFKKQTSVNVYIRQIVHDLIADGTIEPQPQEYTTSPGRDVGDFSFVIV NDVISPQTQLVGYEKWLVEARVRLQNLSSNPASWFGLEYADTVIERVPLILGRPNPS Prediction of potential genes in microbial genomes Time: Wed May 25 06:26:31 2011 Seq name: gi|227862489|gb|ACKR01000089.1| Lactobacillus crispatus JV-V01 contig00094, whole genome shotgun sequence Length of sequence - 2857 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 39 - 88 2.6 1 1 Tu 1 . - CDS 93 - 527 585 ## LCRIS_00162 hypothetical protein - Prom 669 - 728 9.4 + Prom 626 - 685 6.9 2 2 Op 1 . + CDS 719 - 1798 682 ## LCRIS_00164 putative protein without homology 3 2 Op 2 . + CDS 1867 - 2061 330 ## LCRIS_00165 putative protein without homology + Term 2069 - 2119 10.8 - Term 2062 - 2102 5.2 4 3 Op 1 . - CDS 2210 - 2584 369 ## LCRIS_00166 transcriptional modulator of MazE/toxin, MazF 5 3 Op 2 . - CDS 2571 - 2846 297 ## LCRIS_00167 hypothetical protein Predicted protein(s) >gi|227862489|gb|ACKR01000089.1| GENE 1 93 - 527 585 144 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00162 NR:ns ## KEGG: LCRIS_00162 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 144 1 144 144 223 97.0 2e-57 MTEEEKNAQAQADKENEENDDFKVVMPEANKTTMPQEEFKEQPDYLKVFANFYIAEFDED DLEVINLYDENHNMVDINRYVLNNIHFPRKKLVDHVLQYHDYNFKDLLKAMEEKTGVKPE EMLTYEAWEKWDEDQRTKIPSSLS >gi|227862489|gb|ACKR01000089.1| GENE 2 719 - 1798 682 359 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00164 NR:ns ## KEGG: LCRIS_00164 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 249 359 1 111 111 210 96.0 5e-53 MYNENPFDAEFGGIPELYLDFNDDAVKFAQRAHRLKKHPTYSLFITGVRGSGKTVFMNKV GKELKKYKDTMVVTLHNSDDLFRMMYIKLVPMLDKIKKWTPSISIKVPFVSVDFTEANEK HDEIYYKVEINKILKALNKVGIRVAFCIDEVSNTPTIQKLAEEFNDWSLNNYQVSVIMTG LLSEVAELSGTHNLTFLVRADRFHVSKLFASSIARTYMDVLDITAKQAEILADMSKGYAY AFQLIGDLMYENLSQKMTFEKALEYTKLRFRDVLFNQAYDVIAHELTDVDFQFLYAMAQD NSISSIIRTMQKSKQYVNSYRAKLIKYDLIKPIIRGKVGFTLPLFRDFIQAKYDELNWG >gi|227862489|gb|ACKR01000089.1| GENE 3 1867 - 2061 330 64 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00165 NR:ns ## KEGG: LCRIS_00165 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 64 1 68 68 82 92.0 3e-15 MDYETKLAEEREYGEEKGILSAIKKIIYRNRSYGVSDSKTLEDLTEDYHDSVSRDQIEQM MKEA >gi|227862489|gb|ACKR01000089.1| GENE 4 2210 - 2584 369 124 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00166 NR:ns ## KEGG: LCRIS_00166 # Name: not_defined # Def: transcriptional modulator of MazE/toxin, MazF # Organism: L.crispatus # Pathway: not_defined # 13 124 1 112 112 212 99.0 3e-54 MRRIDVHQGDIIMIDAEPHAGHEMGGHDSEKGNIRRRYLVVSRHAYTKKSGLVIGLAITH NHITDDPFRFYVLDYASHTNGDALLFQMLSYDFIARHGKIIGHIKESTEFDNLLQQVRNI FSKE >gi|227862489|gb|ACKR01000089.1| GENE 5 2571 - 2846 297 91 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00167 NR:ns ## KEGG: LCRIS_00167 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 91 1 91 91 147 98.0 2e-34 MVVKARKQGNSIVLTIPSTIKVPLNTEFSVDVNKNGDIVYKRIAKNNYDLWSDPAYDDYD YDTEIKREYQELGYNPREVKPVGKELANEKD Prediction of potential genes in microbial genomes Time: Wed May 25 06:26:44 2011 Seq name: gi|227862485|gb|ACKR01000090.1| Lactobacillus crispatus JV-V01 contig00095, whole genome shotgun sequence Length of sequence - 1534 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 47 - 78 2.1 1 1 Tu 1 . - CDS 91 - 507 343 ## LCRIS_00168 putative protein without homology - Prom 620 - 679 9.8 + Prom 355 - 414 4.1 2 2 Op 1 . + CDS 661 - 876 354 ## LCRIS_00169 hypothetical protein 3 2 Op 2 . + CDS 914 - 1183 456 ## LCRIS_00170 hypothetical protein + Term 1350 - 1386 3.3 Predicted protein(s) >gi|227862485|gb|ACKR01000090.1| GENE 1 91 - 507 343 138 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00168 NR:ns ## KEGG: LCRIS_00168 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 71 1 71 139 80 100.0 2e-14 MKKLVFWGVIAAMFILGGGGAGAYISHANTQTHNNTSYNNSNKKNADPDQQKSNNSDADS NKDNSSQDDSAKSSSDKDKEQSKKSSSSNKKSDDQSSSSSSSSDHQQEQSSSSQSSAASS SNDQSSAVSSSSAADDNK >gi|227862485|gb|ACKR01000090.1| GENE 2 661 - 876 354 71 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00169 NR:ns ## KEGG: LCRIS_00169 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 71 1 71 71 107 100.0 1e-22 MNYELTEQSIQYVFGNKKYKNGQKTRNLKNVKTGAKADELQKVGQAIASLQEDSLDEAYL VQKSRLVPAAE >gi|227862485|gb|ACKR01000090.1| GENE 3 914 - 1183 456 89 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00170 NR:ns ## KEGG: LCRIS_00170 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 89 2 90 90 140 97.0 1e-32 MAKTTKTMKLTFLNGEKKKISITLGDAVDNLTADQVRGAMNTIAEANAFEKDGVAYYHTP QSAAYIERTVTDIFNDSAESAVEPAAKQD Prediction of potential genes in microbial genomes Time: Wed May 25 06:26:53 2011 Seq name: gi|227862477|gb|ACKR01000091.1| Lactobacillus crispatus JV-V01 contig00096, whole genome shotgun sequence Length of sequence - 7536 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 6, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 1633 2090 ## lhv_0184 surface layer protein + Term 1667 - 1698 2.5 2 1 Op 2 . + CDS 1707 - 2297 660 ## gi|227877921|ref|ZP_03995928.1| hypothetical protein HMPREF0506_0929 + Term 2305 - 2333 1.0 - Term 2891 - 2923 1.8 3 2 Tu 1 . - CDS 2962 - 3246 234 ## LCRIS_00173 hypothetical protein - Prom 3409 - 3468 8.5 - Term 3439 - 3480 -0.9 4 3 Tu 1 . - CDS 3523 - 4014 555 ## LCRIS_00174 RNA polymerase sigma factor - Prom 4155 - 4214 6.2 - Term 4199 - 4226 0.1 5 4 Tu 1 . - CDS 4227 - 5096 713 ## LCRIS_00175 hypothetical protein - Prom 5209 - 5268 8.9 + Prom 5205 - 5264 6.0 6 5 Tu 1 . + CDS 5290 - 6186 672 ## LCRIS_00176 hypothetical protein + Term 6211 - 6243 1.4 - Term 6237 - 6278 9.3 7 6 Tu 1 . - CDS 6300 - 7535 1572 ## LBA0169 S-layer Predicted protein(s) >gi|227862477|gb|ACKR01000091.1| GENE 1 2 - 1633 2090 543 aa, chain + ## HITS:1 COG:no KEGG:lhv_0184 NR:ns ## KEGG: lhv_0184 # Name: not_defined # Def: surface layer protein # Organism: L.helveticus # Pathway: not_defined # 411 543 325 456 457 171 79.0 1e-40 VAPASSQEVTDLGTLRGTIVLDRASNTQFSIKLSDAQKDAILQLGGDALKDAKPEDMKNI TVKSASASNSNGEFQQVVTFTVNDKAYQVTLNAKFASQQGTPYFYNKDTNTVVNDGSTVS LNEIANGFSSSDLLNAIQKHYAWKTSDQSNDTINMTTTASDVESQLVAQGLKRASNGNFD YPANGFNLKLTAKSENGNSTTITVRINASVNYNAPAFVFDGNVYYNDNVMSNGKTSGNLV LKDTDKTKVIVNGKFNNDAVTGAVKAYVQSAYGTGFDKTPAELAAHQQLINSSNIKIDSS KVNPSVAGLYPVTITATNPAGFTSKLTVYAIVMGPTEKAPQEYVKADNTKVYNINGNVVS EAANIPALAKGAAVYTFGKVTVNGVEYTRINKEGSNEFVKSSDLTATKPDTTVASQSKTI MHNAFYYNKDGKHVDTDKKLTRYNSVTVSPKTTTINGKAYYEVVENGKLSGKFINADNID GTERTLKHNAYVYKTSKKRANKVVLKKGDKVVTYGGSYKFKNGKRYYKIGNNTEKTYVKA SNF >gi|227862477|gb|ACKR01000091.1| GENE 2 1707 - 2297 660 196 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227877921|ref|ZP_03995928.1| ## NR: gi|227877921|ref|ZP_03995928.1| hypothetical protein HMPREF0506_0929 [Lactobacillus crispatus JV-V01] # 1 160 1 160 196 229 100.0 9e-59 MKKNFKFTSIVAAALFAASPVVSLVAAPNTIQAAAVVTKSSVVTHYLRDRSVYTNSTRIS ASTSINNIHLTNNTGTEIETNDAVLNNGKYTLNAQVTIMGLTPTSTDRSVTIVNNNGEII GSASVNAHSTLAQGNLEFDFAVKNGRLSHTSLGNITGNTIKVSKKKVTKKKHNKVAHKKN HKKAHKKTVKHTKKRK >gi|227862477|gb|ACKR01000091.1| GENE 3 2962 - 3246 234 94 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00173 NR:ns ## KEGG: LCRIS_00173 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 93 40 136 139 143 87.0 2e-33 MNGIINHPEGYIASLQKDVDHYVNSGKWVEDMDKLEYEMNEVARKVKIEDAKKLVLVIKR MGGTKDTALQELTNNYGDMLSHDEIIKLVHEVYQ >gi|227862477|gb|ACKR01000091.1| GENE 4 3523 - 4014 555 163 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00174 NR:ns ## KEGG: LCRIS_00174 # Name: not_defined # Def: RNA polymerase sigma factor # Organism: L.crispatus # Pathway: not_defined # 1 163 1 163 163 263 90.0 2e-69 MTSQKYFEEAWKNRKLVGGALKAAHVRPDYHLYEDLLQEGVILYAEMLRKLDGQKVRSEI DKLSFKKVLWQTIDALRREQRVCERNTAIDEAYDLGKTEAWDNLVALKNEIKKLSQLEQV ILFEHLLEKKTITQLVKECGIPRITLKRLKKQLLGKLRNVMEQ >gi|227862477|gb|ACKR01000091.1| GENE 5 4227 - 5096 713 289 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00175 NR:ns ## KEGG: LCRIS_00175 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 289 1 289 289 534 97.0 1e-150 MDVSAYKQRNLGIISLPTDIKYRNWSKDLTKRRIENDSQLEQYIKYDNKYRLNKNTLAVY EFKQNPILGKYKAVAFDLNRGIVLSQKSTHAMMQGLMRHAVHCDMIWQRMLAREAGVDIY QGIVMYNVLYFSMHAFSGNFFTDWICLHWIKDFHVKRHDQAIFNSIALDENGLVYNFAFD SPKPNLTKIIGQYLFHNHYYSDLYYQHMLQENNLRVTAINSDSILHNSNYYVQLDLYAID SFKKLADKFYNHVLNLHLLTIVKEFKPLDYLHREHRFFTKQIIKIRYNR >gi|227862477|gb|ACKR01000091.1| GENE 6 5290 - 6186 672 298 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00176 NR:ns ## KEGG: LCRIS_00176 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 298 1 297 297 506 97.0 1e-142 MKNTHKQKELWFGFSEDKVFGEIMSNPAFCKHVLQGILPEILIKKIFPPKKQEVIIDPEH RDQKDVRLDILVEDINGNLYNIEMQRSDDDDIARRMRYYASKNDQRYTLHQGYTYNNLKN VFIIFLCTFKTKQKVAIKSTYQTINVDNHADILQDGLTKIIINSNGVPDGTETETLLNLV KLMKDLPVHGDKLFDKAQKRIESMNADPEWRDTIMDFETRMLEREQVGEKKGRMEGEKKG RKEGEKKGLQQGLKTGALTLVASLKDVGCTSQQILQQLKQKYGNVFSDKQLEEFLKQS >gi|227862477|gb|ACKR01000091.1| GENE 7 6300 - 7535 1572 411 aa, chain - ## HITS:1 COG:no KEGG:LBA0169 NR:ns ## KEGG: LBA0169 # Name: slpA # Def: S-layer # Organism: L.acidophilus # Pathway: not_defined # 3 411 33 443 444 282 53.0 2e-74 VYTVINADGTAINTPADAKYDVDVTPNLTAIAASTVNGQTINGSITGNITASYNGQSYTG TLASKNDNAAATDSKGRTVTHFAKLANGLYTVTVKGVSFNFGIANANKTITLGSKNSNVK FSTDEGKSFANTKEVELNQDGTLKKPISIQVSNVNALDLSNASGINFYNASNGSQVTKGS VNVTAGVNGRLNVSTVASEILKNFAAYQVSNGKAVSQMPDQKAVVADVNAALKAANIPVD NAGWFAAPTSFSVNVKVTSSINGVDATLPVTVNVANGKDTTVPSQSKTIMHNAYFYDKNA KRVGTDKLTRYKSVTVAMNTTTINGKAYYEVIENGKATGKFINADNITGTKRTLKHNAYV YKTSKKRANKVTLKKGTEVITYGGTYTFKNGKQYYKIGDNTEKTYVKASNF Prediction of potential genes in microbial genomes Time: Wed May 25 06:27:30 2011 Seq name: gi|227862462|gb|ACKR01000092.1| Lactobacillus crispatus JV-V01 contig00097, whole genome shotgun sequence Length of sequence - 15272 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 7, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 124 - 183 8.1 1 1 Tu 1 . + CDS 278 - 580 425 ## gi|256849284|ref|ZP_05554717.1| predicted protein + Prom 786 - 845 6.2 2 2 Tu 1 . + CDS 870 - 2096 1600 ## COG1705 Muramidase (flagellum-specific) + Prom 2124 - 2183 2.5 3 3 Tu 1 . + CDS 2260 - 3207 1103 ## COG5632 N-acetylmuramoyl-L-alanine amidase + Prom 3210 - 3269 7.3 4 4 Op 1 . + CDS 3295 - 4380 1115 ## COG0475 Kef-type K+ transport systems, membrane components + Prom 4394 - 4453 3.8 5 4 Op 2 . + CDS 4477 - 5133 638 ## COG0569 K+ transport systems, NAD-binding component + Term 5143 - 5187 4.6 - Term 5125 - 5182 15.4 6 5 Op 1 . - CDS 5188 - 5835 620 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) 7 5 Op 2 . - CDS 5853 - 6818 1122 ## COG0673 Predicted dehydrogenases and related proteins 8 5 Op 3 . - CDS 6827 - 7633 845 ## LCRIS_00188 DNA polymerase - Prom 7654 - 7713 2.1 9 5 Op 4 . - CDS 7715 - 8470 532 ## LCRIS_00189 hypothetical protein - Prom 8599 - 8658 10.2 + Prom 8537 - 8596 7.8 10 6 Op 1 4/0.000 + CDS 8626 - 9318 1009 ## COG0588 Phosphoglycerate mutase 1 + Term 9346 - 9381 2.6 + Prom 9437 - 9496 8.6 11 6 Op 2 . + CDS 9596 - 10156 482 ## COG2017 Galactose mutarotase and related enzymes + Term 10189 - 10220 1.1 + Prom 10171 - 10230 5.1 12 7 Op 1 . + CDS 10262 - 11362 1032 ## COG1316 Transcriptional regulator 13 7 Op 2 . + CDS 11362 - 11976 632 ## COG0344 Predicted membrane protein 14 7 Op 3 . + CDS 12014 - 15004 2691 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily + Term 15011 - 15047 3.3 Predicted protein(s) >gi|227862462|gb|ACKR01000092.1| GENE 1 278 - 580 425 100 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256849284|ref|ZP_05554717.1| ## NR: gi|256849284|ref|ZP_05554717.1| predicted protein [Lactobacillus crispatus MV-1A-US] # 1 100 4 103 103 168 100.0 9e-41 MLNKKDKTKIQELTDKTVDLIVENMGKSRKEAEQDFQKSDTYAFLWLAKRNIENAHPIIL YRMFNSELKAKPIDEEQQSFIDFMTDNTIELITQNTNFGR >gi|227862462|gb|ACKR01000092.1| GENE 2 870 - 2096 1600 408 aa, chain + ## HITS:1 COG:lin2838_1 KEGG:ns NR:ns ## COG: lin2838_1 COG1705 # Protein_GI_number: 16801898 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 45 197 155 306 340 111 48.0 2e-24 MKKRLLTSFAAAAMLTSVAVPAVNTTMMNQASSQRVSAATADQTAFLNKAAKQAVKAAKK YGTLPSVMIAQAITESGWGKSGLAVNANNLFGMKADDSWTGETYTAKTREEDKNGKSYYI TAKFRKYPSFEQSFEDNGSKLRNGVSWDPLRYKGTWIENASTYAAATKALTGTYATDSKY DKALNSHITSSNLTKYDPVTVNTTRTYTAGKDSSTYNWPTAPSVASAIGSVKAGEKVVVT KTITFHDGSSRMYIDGRGWVNGSVLDKSSSATKEPVTQAPKNVPAVSKNLIHNAYVYDQN GKKLKGKMYKTSDENGGKWINTYGTKTIKGKTYYRVGENEYIAAGNIDGSLRFLKKNAYV YNQYGNRDNNLKHKKNSQIATYGSAITINGKKYYKVGIRQYVKKSNFM >gi|227862462|gb|ACKR01000092.1| GENE 3 2260 - 3207 1103 315 aa, chain + ## HITS:1 COG:lin2703 KEGG:ns NR:ns ## COG: lin2703 COG5632 # Protein_GI_number: 16801764 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Listeria innocua # 10 305 105 423 770 154 33.0 2e-37 MLKLEGIKYNKFPGVEYQNGKPEGIVVHETDDPGATAHDEAIYFNREWKNINAYVNAFVD SKQVIQMYSPNNGTWGAGLNANNRFIQIELCEEDSRDAFAKSVNNDAIYIAKLLHRYNLK PDNACDDGEGTIWSHKAVSTFLGGTDHVDPDSYFAKWDYDMDQFYSLIEYYYDLQKKNEN TDTKDPNKIKDEVPAEVQGAVTLGHDAYVYDKNGKKTKILKLAGSPVTVLGYKIISNKKY YQIGKNEYVVATNIDATARTVKKNTYLRTRSGRIEKGNLVKKGSRVMTYGSKITIKGQKY YALNATQYVLVSDIN >gi|227862462|gb|ACKR01000092.1| GENE 4 3295 - 4380 1115 361 aa, chain + ## HITS:1 COG:SA0868_1 KEGG:ns NR:ns ## COG: SA0868_1 COG0475 # Protein_GI_number: 15926598 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Staphylococcus aureus N315 # 1 361 1 365 399 220 44.0 3e-57 MAQLSLFLVVLLALVIPIFMARFKISTVPTAIAEIIVGIIVGSSGFNIVVSIHDLTFLSN LGVILLMFLSGMEINFDLLQRKNNPKAKSQAGKTVDPLPTALTAFAGIVVMAFVLAYVLK LIGLFSNVILAAIIFMTIALGVVIATLKEKDILGRPIGQTILLTAVLGEVIPLLLLTIYA SVNGGNAGQLWLIILLFIAAIILLRRFKQPYLWFSKVTKATTQLDIRLAFFLIFALVTVA ERVGAENILGAFLAGMVMKLLEPSEATKDKLTSIGYGFFIPIFFIMTGVGLNLKSLFAHP SSLMLLPVLVIFLFLAKAPVVFLYMRYFEKKNAFAGGFLTATTITIVLPTLQVARKLHAI T >gi|227862462|gb|ACKR01000092.1| GENE 5 4477 - 5133 638 218 aa, chain + ## HITS:1 COG:BS_yjbQ_2 KEGG:ns NR:ns ## COG: BS_yjbQ_2 COG0569 # Protein_GI_number: 16078229 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Bacillus subtilis # 2 214 1 212 214 111 31.0 8e-25 MKETVTIVGANTFTVPVAHDLHDNWYTIKMFTDQQDQYETYDSRVKGLTLLDNLDNQSLE RSGAFDCDIFVAAGHHDQENARMAEYAKDLGVKRAIARMNEVDSDTMARCQEAGVELFNF TNVRSALMRALIESPTVYKIMTDTNNVLYSVKVRSTSYTGRPLRDLEFVDKITVSRIRRG DEWLIPHGWTVIEPNDILIFSGEFKVADRVKKLLSHQN >gi|227862462|gb|ACKR01000092.1| GENE 6 5188 - 5835 620 215 aa, chain - ## HITS:1 COG:SP0860 KEGG:ns NR:ns ## COG: SP0860 COG2039 # Protein_GI_number: 15900744 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Streptococcus pneumoniae TIGR4 # 1 215 1 214 214 255 58.0 4e-68 MKILVTGFDPFGGDKINPAIEAVKKLPDSIKGAKIIKLEIPTVFNKSAQVVHDAIVQEKP DYVLNVGQAGGRAALTPERVAININDGRIPDNDGYQPLGEPIQADGDTAYFTQLPIKAMA KAIRAVGLPATVSNTAGTYVCNHIFYQVQYMRAKEFPSLKAGFIHIPFLPEQVVKRPSTP SMALADIVKGLIAAIGAIVERDGQGDIEAVEGQNH >gi|227862462|gb|ACKR01000092.1| GENE 7 5853 - 6818 1122 321 aa, chain - ## HITS:1 COG:SPy0441 KEGG:ns NR:ns ## COG: SPy0441 COG0673 # Protein_GI_number: 15674565 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Streptococcus pyogenes M1 GAS # 1 319 1 319 319 270 43.0 2e-72 MKLGIIGSGMIVHDFLTTADQVANMTVTAISSTKRSENIARELAKKYNIKRTYTDNEELM ADSEVDTVYVAVPNFLHYEIAKAALEHDKNVICEKPFVQSTTQAKELKKLADEKGLIIVE AITNLYLENFKQIQKELNKIAPIHIVNLNYTQYSSRYDAFLEGKIAPVFDPKKDGGALMD LNIYNIHLVSALFGLPDQVQYYANMQKGVDTSGILHLSYPDKQASLTASKDSYVTPRSFI EGEKGSIYFDGSTGTLDNFTVEMRNEQPKRYNLNKYPHRMAAEFNTFAQMIDQHDTQKAD EAFVNTLETMQILTKAKNSMI >gi|227862462|gb|ACKR01000092.1| GENE 8 6827 - 7633 845 268 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00188 NR:ns ## KEGG: LCRIS_00188 # Name: not_defined # Def: DNA polymerase # Organism: L.crispatus # Pathway: not_defined # 1 268 1 268 268 397 90.0 1e-109 MKLKKTIIGLSFAVLFLLGGCSKQEKKATSALTKTQVVQKAKSSFKSGQVIQSVTLGTDT SNQVALANTTFGGKTTVYHITNQTTSKGKTSSTEEWVNLNNVYINGQDTWYKADLEKLTG HNYADLTDAIMNNHMITNPSDKLVSAYKMKKSKKDGVYTYTLTAKSTDQALMKKAAAPIF DTTAQSTNQAKIFSQIKKLGKYQSMNVKAVIKGNKLSTFNVFVNMKLGKLMYVKVGQSYG NFGSHDFLRVPDSATNAKDLPTTNTKKK >gi|227862462|gb|ACKR01000092.1| GENE 9 7715 - 8470 532 251 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00189 NR:ns ## KEGG: LCRIS_00189 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 251 1 251 251 364 84.0 1e-99 MKFKHQNIIITVLLALLFLTACSKTGSKKTANLPTAKTILTSAEKTKFSSMHATWNELSN GKSLQKAEAQYTKKPTIIYANVSSSSNHYKMWIEGKSNYIQMKGTNSQRWFKTKLSKASA YGAITDNLNGTLLMPFIPNAKYFKVKQNGNDYLLTYKGNNKKIWNAIVSDSAFTALIGID LDDVKPISNEIKINVDQNYDIKNVNVTSTYKDEGHKKNFTMQIDQINQVKKLTVPASIKK SAVDLGKINTK >gi|227862462|gb|ACKR01000092.1| GENE 10 8626 - 9318 1009 230 aa, chain + ## HITS:1 COG:NMB1604 KEGG:ns NR:ns ## COG: NMB1604 COG0588 # Protein_GI_number: 15677454 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Neisseria meningitidis MC58 # 3 225 2 224 227 309 66.0 2e-84 MSKLVLIRHGQSEWNLSNQFTGWVDVNLSEKGVEEAKKAGRLIKEHGLEFDQAYTSLLTR AIKTLHFALEESGQLWIPETKTWRLNERHYGALQGLNKKATAEKYGDEQVHIWRRSYDVL PPAIDDDNEFSQAHDRRYANLDPHIVPKAENLHVCLDRVMPFWEDHIAPDLLDGKNVIIA AHGNSLRALTKYIENISDEDIMNLEMKTGEPVVYTFDENLDVVNKEKLDD >gi|227862462|gb|ACKR01000092.1| GENE 11 9596 - 10156 482 186 aa, chain + ## HITS:1 COG:L74167 KEGG:ns NR:ns ## COG: L74167 COG2017 # Protein_GI_number: 15673611 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Lactococcus lactis # 3 122 7 143 297 64 27.0 1e-10 MQTIDNSLFQVSVDENGARMAHLVSLTDQFDYLGEQESEEGMALAFPVMDQADNLANKLP WTVVDKGDTRVSLTLIDTPESYKSFPYHFEVMTTYALEGNQVNISFYLKNSSNKELPFSL GFILPTSWQSESQVNKISLTGKEHGIDLTSTDFKLSAKEGSVTAFTDKIELEAKSSRNFA LSLTLK >gi|227862462|gb|ACKR01000092.1| GENE 12 10262 - 11362 1032 366 aa, chain + ## HITS:1 COG:SP1942 KEGG:ns NR:ns ## COG: SP1942 COG1316 # Protein_GI_number: 15901766 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 33 334 9 319 338 179 34.0 5e-45 MKDRKQRSNHPHNSRVDTHSYKNRHIWVWVISIVALLAVAGAAYFASVYFRTKSAVDKTY DPKTAVKTTGEFDGKKKFAVLLMGTDTGALDRTEKRGRTDTMILAVVNPAKKRYTLVSIP RDTMAQMVGSESFKTEKINAAYELGGARMSMDSVSKLINVPIKYYAVVNMGGIMKMIRYV GGINIRPTLSFEYGGYIFKKGKLTHMGGAGALAYSRMRYDDPRGDYGRQERQRQVITTLI KKAVSISSLSNLDSILTSVSSNVRTNLPFSAMQQIAMNYRSCANSSSSDYLHGYNAMIDD AAYQVQPTSELQRISNLVRKELGLPKEMISNNETFQNEKNIANGFSFKSEKTQHYHIYDY TEEGDN >gi|227862462|gb|ACKR01000092.1| GENE 13 11362 - 11976 632 204 aa, chain + ## HITS:1 COG:PA0581 KEGG:ns NR:ns ## COG: PA0581 COG0344 # Protein_GI_number: 15595778 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Pseudomonas aeruginosa # 8 110 7 109 189 72 37.0 5e-13 MARIWATLIGYVFGNFLTAMIVGKIFLKINPTEYGSHNPGTANMGAVFGKKWGILTCLGD LLKSLIALFIVYFAFPAHINIAYTGLGLILGHCFPIWDHFRGGKGVAVAAQVAVFYNWKA GFATLLVALVLTAIMQNLTIPPLVFMLLFSINTFLHNQEAGFVFIVITLIMCFKFWHDIV DFFTGHGKKVDILLSIKKKLGIIK >gi|227862462|gb|ACKR01000092.1| GENE 14 12014 - 15004 2691 996 aa, chain + ## HITS:1 COG:SPy0793 KEGG:ns NR:ns ## COG: SPy0793 COG1368 # Protein_GI_number: 15674836 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Streptococcus pyogenes M1 GAS # 408 994 267 822 824 239 32.0 2e-62 MSEINKKKSLNALQIICLIVVAFFMLVQMYSGGSTFGRLPLSTLMRFIPGLLGHSTMVLV PMVFGAVYSKRKVHPTEAFKFWIIAVVTLVLLYLVNFFKRPGTFNMWKLWGVFFPVLTST SVLLAGLIFSMLVQPYLYELQHRITTKQNVLLLSALTLTGFATSAGTMIFNKSIYGIYLI LYFAWGMFLANVKIPKKVFGWSIAAGVMSFFVMFIGIPGFNGVYWYQRLSGRSGVYSWNP KFLSNIASPFLFLMVLAAFLIFRKVIVSYSAKQMHFFIPVIIFMDAPIIGGFVKSFRFTN SAGFNKFLMIVIMMLAAWGLSWLYERYLFKVKPVKRTVAFFKQHNNLAEIVEDAWTNFTA WIVENRVRLLTWGWFYVLSFASFLIESDNLRIQITTATDINAVIFLLGTRFFAIILTAIF LDAMFAIFYFITTRYWTSTVLVTVITIGWAIANKIKLDLRGEPIYPTELDEIVNWKTLMP MVGQQKIIMIAIALVIIIALTVFLAIKFPIKKKGSWKRRGIWALLSLLLFMTPVRFNHDG GIIYHINRGFDNKQSFRNPERDIQINGPLLNFLNYFDLQIMNKPTNYSKSTIQHLNEKYS KIANEINKTRKNTLKNQTIVYNLSESFVDPYTFPTVKIDPKVPNPVKFIQSMAKRSTYGS MLSAGYGGGTANMEWETLTGFNMGMFKSTLTPYVQIVPNHDFYPTVGMDFNYKSAVHPFI GTYYSRVEDYKRFKFNKFVYLGSKYKIIDQKKLGKSTYNSDYTTYANGLKQINSMKGGQF INLISIQNHMPYNNWYPNNEYMGKVSGELFNTAAIREQMATYMKGVQYTDKAVKQFIGKI DKIKKPITVVFYGDHYPSILSQNYASRYPVQMHSTRYFIYSNKYAREHGAKSKLTHNSNY VNTSDFTAMMLEQTNSKVTPYQALLTEVHKKLPAITINFNGDQGFQLVDQKGHFVDPKKL TSEQQAILKDYEMVQYDMTAGQAYGLKAKGFYKIGD Prediction of potential genes in microbial genomes Time: Wed May 25 06:27:48 2011 Seq name: gi|227862445|gb|ACKR01000093.1| Lactobacillus crispatus JV-V01 contig00098, whole genome shotgun sequence Length of sequence - 19208 bp Number of predicted genes - 16, with homology - 16 Number of transcription units - 9, operones - 5 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 101 - 160 7.2 1 1 Tu 1 . + CDS 221 - 1597 1464 ## LCRIS_00195 fibronectin domain + Term 1802 - 1843 10.2 + Prom 1765 - 1824 3.7 2 2 Tu 1 . + CDS 1851 - 3113 595 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 + Term 3149 - 3180 1.1 + Prom 3234 - 3293 11.6 3 3 Tu 1 . + CDS 3537 - 3944 608 ## LCRIS_00197 hypothetical protein + Term 3950 - 4019 31.4 + TRNA 3932 - 4004 66.4 # Thr GGT 0 0 + Prom 3946 - 4005 61.7 4 4 Op 1 . + CDS 4039 - 5352 1584 ## COG3579 Aminopeptidase C 5 4 Op 2 . + CDS 5352 - 6005 727 ## COG1418 Predicted HD superfamily hydrolase + Term 6020 - 6067 6.3 + Prom 6065 - 6124 7.3 6 5 Op 1 6/0.000 + CDS 6173 - 7792 1861 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 7924 - 7966 7.8 + Prom 7857 - 7916 6.4 7 5 Op 2 . + CDS 7982 - 9610 1567 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 9739 - 9777 7.1 + Prom 9619 - 9678 3.8 8 6 Op 1 . + CDS 9869 - 11239 667 ## lhv_0676 transposase + Prom 11371 - 11430 5.0 9 6 Op 2 . + CDS 11463 - 12608 1537 ## COG0516 IMP dehydrogenase/GMP reductase + Term 12615 - 12684 15.2 + Prom 12657 - 12716 11.6 10 7 Op 1 49/0.000 + CDS 12766 - 13695 1073 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 11 7 Op 2 44/0.000 + CDS 13704 - 14735 994 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 12 7 Op 3 44/0.000 + CDS 14751 - 15809 1013 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 13 7 Op 4 . + CDS 15830 - 16774 290 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 + Term 16828 - 16862 5.1 - Term 16815 - 16848 4.1 14 8 Op 1 . - CDS 16870 - 18186 1732 ## COG3579 Aminopeptidase C - Prom 18226 - 18285 7.7 15 8 Op 2 . - CDS 18328 - 18753 521 ## COG0071 Molecular chaperone (small heat shock protein) - Prom 18928 - 18987 9.3 + Prom 18743 - 18802 9.3 16 9 Tu 1 . + CDS 18995 - 19208 181 ## lhv_0223 transcription elongation factor GreA Predicted protein(s) >gi|227862445|gb|ACKR01000093.1| GENE 1 221 - 1597 1464 458 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00195 NR:ns ## KEGG: LCRIS_00195 # Name: not_defined # Def: fibronectin domain # Organism: L.crispatus # Pathway: not_defined # 1 458 7 464 464 829 98.0 0 MALASAALFGSSATTVQAGTYNPKNITSFNINRRNYVAKGKIYKLHLPAAGRLVTNGNVT LKNSMEWTCIPYGKDKNTYYLRKGTYYLTSSKNISVKTTYTRLTKIRKNLETYVETKKNN DNSSLKARKIEIGQDIKAMGEMYDYDSVDYYTFTIDSPQMVTMRMINNPIYQLGKGNIFS KMNVIMFSENNPVGGSTMLYPESFEINGNKIASQSWYLSKGNYTFSVNTRGLYNFQLTAV PDTRVVPADTEIESLQNTKDGMVANLRDARHAKTYELAWREKGSKAAPFTSSSNTTEVST APATRYIDKNDRKIPVSIGKKLVNGQSYYFVARGVSNPDYIRYGNPEKDNYFGAWSNSVE HTYYAPSDATPGAVDLTTAKADSTYHNIHVAWNKIASAQSYRIAYRQKGTNKWYYEVTDQ ATNAITGITRNRNYEVKLQALNGEKTGPWSAIKTIFVK >gi|227862445|gb|ACKR01000093.1| GENE 2 1851 - 3113 595 420 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 3 419 6 416 418 233 37 6e-61 MAKFDILEDLKWRGAINQETDEEGLRKYLAEHDDWALYCGTDPTGDSLHIGHLIPFMILK RFQMAGYHPVILIGGVTGAIGDPSGRKTERTLQTAEQVKHNEESLTNQMKKLFGTENFEI RNNAEWLSKLNLIDFLRDYGKLFQVNNMINKDVVASRLENGISFTEFTYQILQAIDFYHL NKDDGVQLQIGGSDQWGNITAGIDLIHKLEGADRPAFGLTIPLMLKADGTKFGKSAGGAV WLDPEKTSPYEFYQFWINQDDRDVVKYLKYFTFLSREEIEDLAEKTEKEPWKRAAQKKLA EEVTKFVHGEAGLEEAKMITDALFSGNIKNLSVAQIEQGLKNAPSAEAGNEKKNIVDFLV DTKIEPSKRQAREDVKNGAIYVNGDREQSTDFEVDPSSDFDGKYVIIRKGKRKYTLVTIK >gi|227862445|gb|ACKR01000093.1| GENE 3 3537 - 3944 608 135 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00197 NR:ns ## KEGG: LCRIS_00197 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 111 1 111 118 151 99.0 8e-36 MLESKKAIKIISSLVIGLSLGCVLTPIAQATSFTAPKLGTATQAPTNPAIKKGDKIFVVI KDTKNQKVAVYNKNAEKTSKKVAMGSTYTAKDVKKVNKKKIVRINKSQWLNTINKDEDVQ MNVFAFFGIMKTLAS >gi|227862445|gb|ACKR01000093.1| GENE 4 4039 - 5352 1584 437 aa, chain + ## HITS:1 COG:lin2432 KEGG:ns NR:ns ## COG: lin2432 COG3579 # Protein_GI_number: 16801494 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Listeria innocua # 1 437 1 437 441 352 38.0 9e-97 MKHELTMNEIAKFQKEYEQKPQNRVAELAVVNNGVAKASLDSEKVRKLNRTFSIEIPTDN VTDQKQSGRCWLFAALNTLRHGFAKKYNAKNFTFSQNYLFFWDRIERANIFFDNILNTAD RPLSDRTVHTYMQGPDTDGGQWAMAVSLIRKYGLVPTYAQDESFTANNTAFFNRILNNKL REDGLVLRKLAQAGKNDEIEAKRQEFLSEVYRMAVIAFGQPVQKFDLEFKDDEGKYHFDG DLTPLDFFHDYFTDDLDDYIVLFNAPDHEFDKLYALPFEDNVEGGSPVHFLNTKIENLKE AAIKQLEAGETFWFGCDVGKDSDRQKGILAHNLYQTDAIFNIETKLSKKERLETGASGST HAMTMVGVDVVNGKPRQWKIENSWGNKVGEKGYFVMDDNWFDEYLFKVVVKKQYVPEKLV KIWEGKATPVKAWDSMA >gi|227862445|gb|ACKR01000093.1| GENE 5 5352 - 6005 727 217 aa, chain + ## HITS:1 COG:BH2835 KEGG:ns NR:ns ## COG: BH2835 COG1418 # Protein_GI_number: 15615398 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus halodurans # 9 216 13 212 215 130 36.0 2e-30 MEIKQVIDFTQTHLKNEKTGHDFYHGERVANLASQMYLADHADAHEDSRVVAIIKTAGYL HDTIDEKICADPQKVIDEIKVLLPQVGFNELEAWDILFTIQHMSFSANIEHHYHLPLSGQ YVQDADRLESLGAIGIARAFTYGGKHGNKIYDPEIKPAVLTSHDQYRNHVETTINHFYEK LFHLEDLMNTPAAKKEAERRTAYMRDFVREFMQEWNV >gi|227862445|gb|ACKR01000093.1| GENE 6 6173 - 7792 1861 539 aa, chain + ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 27 537 37 557 559 360 41.0 3e-99 MKFTKLFAAGATVLIAGSTLAACGSNSNSSSSSAKKTINWMDSAEIPTMDISKATDVTSF NQLGNVEEGLYRLGKNSKVENALATDTKVSKDGKTWTFTLRDSKWSNGDKLTAKDFVYSW RRTVNPKTASQYAYLFEGIHNATQISAGKAPVNSLGVKAEGDNKLVVTLDKRIPYFKLLM GFPLFFPQNQKVVEANGSKYGTSSKTTAFNGPFVQKGWTGSNLSWKLVKNKNYWDKKNVK LDAINYSVQKTPSTAYNLYQSNKLDATILDSQQTKNLKHQKGYTLRDTAATFYLQFNQKK KIFKNADLRRAISMSINRKALGSALGGANTPATSLTSKGVVNHDGKDWSEVVGDKKNAAY NPTEAKKLYKKALKELGVKNVSFTILSDDTDSGQKTTETLQSQLEENLKGMKVSVANVPF KTRLNRSTSGNFDVVVSGWSADFADPISFVDLFTSKNAQNNGKWSNSQYDKLIADSKTTA DTTKRWDDLEKAEKILLSDEGIAPLYYKTEAWLVRPDIKGIVYNGAGLNYNFKNTYVAN >gi|227862445|gb|ACKR01000093.1| GENE 7 7982 - 9610 1567 542 aa, chain + ## HITS:1 COG:SA0849 KEGG:ns NR:ns ## COG: SA0849 COG4166 # Protein_GI_number: 15926579 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 6 542 3 540 551 347 38.0 3e-95 MKKWKKYFSASLLTVVSAATLAACSNKSSSSGTKQTLNWMTKSELQTLDLSKVTDATSLD QINNSMEGLYRLGKNSKVENALATKTEVSKDGKVWHFTLRKNAKWSNGDPVTAKDFVYSW RRTVDPKTASQYAYLFSGVKNADDVVAGKKKVETLGVKADDNQHLTVTLDRRIPYFKLLM GFGVFFPQNEHAVEKYGKNYGTSSKTMVYNGPFVSKGWTGSNLSWKLVKNKDYWDKGKVK LSKINYSVQKTPSTDYNLYQSGKLDVALLAPQATKQLKNQSGYTIRPASSTQYLQLNEKN KLFQNTDFRRALSLSVNRKALASAVGGANKPVTTFSPNSMTEVNGKDYTELVKTAETDKL MTYNPTLAKSYWKKAQKALGQSKVNFTLLTYDDDDAKKAGEYLQSTIESNLKGVNVRVNS LPKKTALVRGQNGNFDALLMGWQADFTDPISFLDLNTSNASYNWGKWANKEYDKYVAASK TTGNENTRFEDLAKAERVLLTEQGVVPLYQPAEAWMVRPTVKGVVYNGAGANYNFKYAYV EK >gi|227862445|gb|ACKR01000093.1| GENE 8 9869 - 11239 667 456 aa, chain + ## HITS:1 COG:no KEGG:lhv_0676 NR:ns ## KEGG: lhv_0676 # Name: not_defined # Def: transposase # Organism: L.helveticus # Pathway: not_defined # 262 456 2 193 194 211 52.0 6e-53 MKALHKNILERLDQIINNTGDHIHDFINNPHAFTRKRTLDAATVLKTTINMQGQNLNSEL FRAFGEDATKKNDKVVSTSAYVQRKSQLSPACFKHILTVFNQNLFNIQLFDHHYRLFAID GSDFNQIWNPKSNNIVQASSHKKKPYCQIHVNALYDLLNNTYQDCIFQPKSEMDERKAAV QMLKALNCGPYIVTMDRGYTSFNMIENCNRLPNCHYIIRTKAGQGGVKEITTLPDQECDR EISCLVTTSNYYYITHKASENIHHVQHHYRQYIKYRSKNTQDLSWDFGELCTIKFRACKF RINDAKSGKEEWEVVLTNLDRKNYPLKRIKELYHLRWGIETSFKKLKYSLGSVQFHSKQD KFIEMEIYAHMIMFNAISQIDAQAYIPQKHCKYQYAINFKQSCLIIQSMYLASSLTQDFE RILIQISYYTIPIRPGRKDKRNIKPKSAVYYLYRVA >gi|227862445|gb|ACKR01000093.1| GENE 9 11463 - 12608 1537 381 aa, chain + ## HITS:1 COG:SP2228_3 KEGG:ns NR:ns ## COG: SP2228_3 COG0516 # Protein_GI_number: 15902032 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Streptococcus pneumoniae TIGR4 # 102 380 4 280 281 390 75.0 1e-108 MSNWDTKFAKKGLTFDDVLLIPAESHVLPNEVDLSTTLADNIKLNIPLISAGMDTVTEGA MAIAMALQGGLGVVHKNMSIQAQAGEVANVKSVVVPTSAAKAATDDQNHLLCAAAVGVTS DTFERAEALLEAGADAIVIDTAHGHSAGVLRKIKEIRDHFPEATLIAGNVATGDATRALF DAGVDVVKVGIGPGSICTTRVVAGVGVPQITAIYDAATAAREYHKPIIADGGIKYSGDVV KALAAGGNAVMLGSMLSGTTEAPGEIFEDNGKKYKRYRGMGSVGAMAQAHGSSDRYFQGG VNEANKLVPEGVEARVEYKGDVSDVVFQIDGGLRSGMGYCGAANIPELIDKAQFVQITNA GLRESHPHDVQMTKAAPNYTK >gi|227862445|gb|ACKR01000093.1| GENE 10 12766 - 13695 1073 309 aa, chain + ## HITS:1 COG:lin2299 KEGG:ns NR:ns ## COG: lin2299 COG0601 # Protein_GI_number: 16801363 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Listeria innocua # 1 304 1 304 309 340 55.0 3e-93 MARYLLKRIFYMILTLLIVATVTFFLMKLMPGSPYANEAKMTLTQRQIMDQQYGLNKPIW QQYLIYIAGMLHGDFGTSFQYSNQPVASLIGARLGASVQLGLQALILGVVLGVIAGAIAA MRQGTWVDSTATVISILGKSVPNFVLAVLLQYYIGLKLGWFPIAGWGQFSQTIMPTIALA VGPFAETARFIRTSMVDTLSSDYIELGKAKGLSRMEVIRKHAMRNSMIPLVTLIGPYAVA LMTGSMVIENIFNVPGIGEQFVKSILTNDYPTIMGITMVYCIGLVVILLITDIVYGLIDP RIRLDESEA >gi|227862445|gb|ACKR01000093.1| GENE 11 13704 - 14735 994 343 aa, chain + ## HITS:1 COG:lin2298 KEGG:ns NR:ns ## COG: lin2298 COG1173 # Protein_GI_number: 16801362 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Listeria innocua # 1 340 1 341 344 314 51.0 2e-85 MTEEKLNLPADAFEPLSKDEAQDNENIAGPSLSFAQNVWLRFKQRKAAIISAIIVILMIV VAFGSTPFINKSTLVKSHPQYANLPAKVPGMSAINGLNGKIKQNGKWVDAYAQNGVPKDK YFIAGTDYLGRSLGQRIIYGTKISLIVALVAAFFDLTIGVAYGIVSGWKGGGVDNVMQRI IEIISSVPNLIIVVLMLVVLKPGIKSIILAIAISSWTTMARQVRAETLSLKNEEYVLAAR SLGESPWKIAWKHLVPNLSSIIIIQTMYTIPTAIFFEAFLSFIGIGISAPETSLGVLLNE GQKNFQFLPYQMWYPAIVLCVLMIAFNLLGDGLRDAFDPRGQR >gi|227862445|gb|ACKR01000093.1| GENE 12 14751 - 15809 1013 352 aa, chain + ## HITS:1 COG:L148976 KEGG:ns NR:ns ## COG: L148976 COG0444 # Protein_GI_number: 15672329 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Lactococcus lactis # 1 343 1 346 349 478 68.0 1e-135 MPEERVLDVKNLKIDFHTYAGEVKAIRNVSFHLNKGETLAIVGESGSGKSVTTRSIIGLL ARNAQIEDGEIDFHGKNLLELSEKEMQKIRGNEISMIFQDPMTSLDPTMKIGQQIAEPLI KHKGASKKEAWAKALEMMKAVGIPNAEERINQYPHQFSGGMRQRIVIAIALICEPEILLA DEPTTALDVTVQAEILDLMKDLQKRVKTSIIFITHDLGVVAGMADRVAVMYAGEFLEFGG VDEIFYDPQHPYTWGLINSMPTLNSDTLESIPGTPPNLLDPPKGDPFAPRNKYAMKIDVE RKPRFFKVTDTHYAATWLLAPGAPKVEPPAEITRRWKKYNLMKQEDKLPEVN >gi|227862445|gb|ACKR01000093.1| GENE 13 15830 - 16774 290 314 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 1 252 1 258 563 116 30 1e-25 MPEKKKILEVKHLKQYFKNGRNVTKAVDDVSFNIYEGETFGLVGESGSGKTTTGRSILQL YKPTSGEVIFEGKNVADLKSRADKLAFTRDAQMIFQDPYASLNPRMTVEDIIAEGLDIHH LVKNKDERTERVEELLETVGLNASHASRFPHEFSGGQRQRIGIARALAVEPKFIVADEPI SALDVSIQAQVVNLMIELQKKRGLTYLFIAHDLSMVKFISDRIGVMHYGKLLEVGPADDV YDRPLHDYTKSLISAVPIPDPEVERSRTRIPYDAQKEEMDGKQRSMHEIRPGHFVRCSDD EVKHYEEVAASYEN >gi|227862445|gb|ACKR01000093.1| GENE 14 16870 - 18186 1732 438 aa, chain - ## HITS:1 COG:lin2432 KEGG:ns NR:ns ## COG: lin2432 COG3579 # Protein_GI_number: 16801494 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Listeria innocua # 1 438 1 437 441 333 40.0 5e-91 MAHELTVQELEKFSAEFNKKPENKVVARAAQRSGVLEASYNDRVQGQLTRVFSTELDTNN VTNQKHSGRCWLFATLNVLRHAFGKKYKAKDFTFSQAYNFFWDKIERANMFYNRILDSAD MPLDSRQVKADLDFAGSDGGQFQMAAALVEKYGVVPSYAMPETFNTNDTTGFATALGDKL KKDALVLRHLKQYGKDDEIKKVREKFLSEVYQMTAIAVGEPPKTFDLEYRDDDKKYHLEK NLTPLEFLHKYMGGVDFDDYVVLTNAPDHDYNKLYGLPAEDNIEGSLRIKLLNVPMEYLS SAAIAQLKDGEAVWFGNDVLRQMDRKTGYLDTNLYKLDDLFGVDLKMSKADRLKTGVGQV SHAMTLVGVDEDNGEVRQWKVENSWGDKSGVKGFYVMNNEWFKDYVYEVVVHKKYLTENQ KKLAEGPITDLPAWDSLA >gi|227862445|gb|ACKR01000093.1| GENE 15 18328 - 18753 521 141 aa, chain - ## HITS:1 COG:TM0374 KEGG:ns NR:ns ## COG: TM0374 COG0071 # Protein_GI_number: 15643142 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Thermotoga maritima # 39 129 44 133 147 68 39.0 4e-12 MANDMMNRRNDMMDAMNDWFGFPRNFFDDNEIENIMQSDVAETDKDYLVKIDMPGMDKQD INVNYNDGTLNVSGTRKSFKDTSDKNRNIIHKERSEGSISRSYRLPNVVASEIHAKYDNG VLTITLPKETAGNDGNSIQID >gi|227862445|gb|ACKR01000093.1| GENE 16 18995 - 19208 181 71 aa, chain + ## HITS:1 COG:no KEGG:lhv_0223 NR:ns ## KEGG: lhv_0223 # Name: greA # Def: transcription elongation factor GreA # Organism: L.helveticus # Pathway: not_defined # 1 71 1 71 153 129 98.0 3e-29 MVYFQKMTPEGYQQIEDEIARLKKDRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQS RLRYLGKQLKY Prediction of potential genes in microbial genomes Time: Wed May 25 06:28:08 2011 Seq name: gi|227862429|gb|ACKR01000094.1| Lactobacillus crispatus JV-V01 contig00099, whole genome shotgun sequence Length of sequence - 13930 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 6, operones - 5 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 259 132 ## COG0782 Transcription elongation factor 2 1 Op 2 . + CDS 339 - 1001 582 ## LCRIS_00210 abortive infection protein + Term 1010 - 1042 4.2 - TRNA 1050 - 1120 56.2 # Gly CCC 0 0 - Term 998 - 1030 4.2 3 2 Tu 1 . - CDS 1130 - 1723 370 ## COG2135 Uncharacterized conserved protein - Prom 1777 - 1836 11.8 + Prom 1725 - 1784 10.1 4 3 Op 1 . + CDS 1841 - 2863 1251 ## COG0180 Tryptophanyl-tRNA synthetase 5 3 Op 2 . + CDS 2879 - 3358 381 ## COG2131 Deoxycytidylate deaminase 6 3 Op 3 . + CDS 3372 - 3956 646 ## LCRIS_00214 beta-propeller domain of methanol dehydrogenase type + Term 4181 - 4231 5.3 + Prom 3959 - 4018 5.2 7 4 Op 1 1/0.000 + CDS 4254 - 5207 517 ## COG0474 Cation transport ATPase 8 4 Op 2 . + CDS 5158 - 6921 1104 ## COG0474 Cation transport ATPase + Term 6934 - 6971 1.0 + Prom 6927 - 6986 7.8 9 5 Op 1 8/0.000 + CDS 7021 - 8997 2214 ## COG0143 Methionyl-tRNA synthetase 10 5 Op 2 3/0.000 + CDS 8997 - 9764 725 ## COG0084 Mg-dependent DNase 11 5 Op 3 7/0.000 + CDS 9751 - 10317 675 ## COG1658 Small primase-like proteins (Toprim domain) 12 5 Op 4 2/0.000 + CDS 10307 - 11191 859 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 13 5 Op 5 . + CDS 11253 - 11510 133 ## COG4466 Uncharacterized protein conserved in bacteria + Term 11530 - 11570 5.2 + Prom 11530 - 11589 6.0 14 6 Op 1 . + CDS 11619 - 12449 986 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 15 6 Op 2 . + CDS 12496 - 13881 1707 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) + Term 13889 - 13923 1.2 Predicted protein(s) >gi|227862429|gb|ACKR01000094.1| GENE 1 2 - 259 132 85 aa, chain + ## HITS:1 COG:SP1517 KEGG:ns NR:ns ## COG: SP1517 COG0782 # Protein_GI_number: 15901363 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Streptococcus pneumoniae TIGR4 # 1 85 71 157 160 58 44.0 2e-09 LKYAEIVKAEDDGKVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKVSFDSPLGQAIM KKEAGTTATVAAPVGEYQVTIVEVK >gi|227862429|gb|ACKR01000094.1| GENE 2 339 - 1001 582 220 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00210 NR:ns ## KEGG: LCRIS_00210 # Name: not_defined # Def: abortive infection protein # Organism: L.crispatus # Pathway: not_defined # 1 220 1 220 220 346 99.0 4e-94 MNTPRSREGNVIRYAVYLAGYVAVFAVVKLVTRKSPVHIWDLILFGLVAAMILLFYVYRF NREQRFFARDYKLPWLGSLSTVVLLTLVITVTQISISYLQSYGRISHYDFQLIYAKSESV NMFWFLIVVQGIVLPILQEFLATGFLFNYAFRRNTKQVAIMGIIVSGLIYSLLNFQNSVV LFIIDAIYGMVFAWSYMYTQTLLMPIYLAVVSGVLTVIMI >gi|227862429|gb|ACKR01000094.1| GENE 3 1130 - 1723 370 197 aa, chain - ## HITS:1 COG:SMa0882 KEGG:ns NR:ns ## COG: SMa0882 COG2135 # Protein_GI_number: 16262936 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Sinorhizobium meliloti # 1 175 1 172 196 59 26.0 4e-09 MCNQFRLPNLKQIQQYLKSDLDLPLVTPNFDIQAQDIFPNQVAPVLLYQNGQLQLSNKKW GYPSPVDPKKPLFNARIERFYDSAPSMWDKSFAKQRCLILTEKFFEYAKTTHIAENGRKY HDRYAFRTNQPLTLIAGIYDQDYFSMVTTAPNKDMAPIHNRMPLVVMPNELRRWLFQNFT SLIDRKSVDLQIEKMLK >gi|227862429|gb|ACKR01000094.1| GENE 4 1841 - 2863 1251 340 aa, chain + ## HITS:1 COG:L0358 KEGG:ns NR:ns ## COG: L0358 COG0180 # Protein_GI_number: 15672048 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Lactococcus lactis # 1 338 1 341 341 459 68.0 1e-129 MAKEILLTGDRPTGKLHIGHYIGSLKNRVKLQNSGKYDPYIMIADTQALTDNARNPEKIR NSLIQVALDYLAVGIDPAKSTIYVQSQIPALFELTAYYMDLVTVARLERNPTVKTEIKQK DFKDSIPIGFLNYPVSQAADITAFKATVIPVGDDQEPMLEQTREIVRTFNRVYNCDVLVE PKGYFPPKGQGRLPGLDGNAKMSKSLGNAIYLADDAKTVQKKVMSMYTDPNHIHVEDPGK VEGNTVFTYLDVFDPDKDKVAELKAEYQKGGLGDVKIKRYLNKVLEAELAPIRERREKFA QDEDAVYEMLLEGSKKANKVANATLEQVRDAIGLNYFKNR >gi|227862429|gb|ACKR01000094.1| GENE 5 2879 - 3358 381 159 aa, chain + ## HITS:1 COG:SPy1823 KEGG:ns NR:ns ## COG: SPy1823 COG2131 # Protein_GI_number: 15675651 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Streptococcus pyogenes M1 GAS # 1 139 1 139 153 188 60.0 3e-48 MHDRIPWKQYFMMQALVIAQRSTCNRALVGSVLVKNNRIIGTGYNGSVSGQPHCDDVGHQ MVDGHCVRTIHSEMNAIIQCAKFGVSTENTEIYVTHFPCYNCCKSLLQAGVKKINYYFDY RDNPLAMQLLHDSGVPYEQIKINRKYVESLAHKLEEDEN >gi|227862429|gb|ACKR01000094.1| GENE 6 3372 - 3956 646 194 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00214 NR:ns ## KEGG: LCRIS_00214 # Name: not_defined # Def: beta-propeller domain of methanol dehydrogenase type # Organism: L.crispatus # Pathway: not_defined # 1 194 1 194 194 361 98.0 6e-99 MGLVTVFLITTGFVQPNIEDHAHILDKETRTLITEKNNRYFQTKEQPQIVVITVKRLNKL TPKMLDHSKRTVFIVVGQKGKKRNVQIYSTKDLHSAFTEVARGNILRAEVDKLRSQNNAT FNKGIRFVFRACATRVDQQYQYALDKYDLTQAEQNKVARPHSVALPIALALAFLITGITY FLRRFSHRDPISKK >gi|227862429|gb|ACKR01000094.1| GENE 7 4254 - 5207 517 317 aa, chain + ## HITS:1 COG:L85514 KEGG:ns NR:ns ## COG: L85514 COG0474 # Protein_GI_number: 15673239 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 16 294 26 302 910 185 33.0 1e-46 MLKAASKKRSNIDIQRIQRIARESRSETLARLQASAEGLSTNKAEENRREYGKNEIITNS NSSKWRLLWESIATPFTLVLLVLTLLTLFTSYILVPQGDNDLITTIVMIVMLIISVLVNF IQKIRIAKVTDQLLNMVSVTTNIRRDGKNVELPTDEVVVGDVINLSAGDMIPADMKLLTS KDLFCSSSYLDGDPEPAEKMANVVIKPSMANDYLNYPNILYEGTTIVSGSGTGIVFAIGN HTVFGKAVQAISRKKVKTTLFDREMKQLAKILIIATAIVIPLLFVINGLTKGNWGGKLNF RFDSGSWLNTRSVADYC >gi|227862429|gb|ACKR01000094.1| GENE 8 5158 - 6921 1104 587 aa, chain + ## HITS:1 COG:L85514 KEGG:ns NR:ns ## COG: L85514 COG0474 # Protein_GI_number: 15673239 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 6 584 315 905 910 499 42.0 1e-141 MTAAVGLTPEVLPIIVNSNLTRGAREISQNGAVVKQMNAIQNLGSTDVFCIDKTGTLTQN QVVLERHYDLDMQETPQILKFSYLNAYYQTGVKDLIDKAVIDAAGDELDVNEIQRDYNKI DEIPFDYTRKRMSVVVVDNDEHHGQHLLVTKGAAEGMLAISNKVELNGKVEDLTTAWREK ILNQINELNDDGLRVLLVGYKLNPAPVGEFSAKDEHDLTIIGYLAYLDPPKETTKEALED LKKDYVDVKIFTGDNEAVTRAIALQVGLNVDTVYDGTQIEAVSPEELREIVEKCDIFVRI TPELRVKIINALKANGHTVGYMGNGNKDALAMKVADVTVTSNTSVDIIKESADIIFEQKD LQLLEEMILMGRKVFSNTMKYIKTFLVTNAGSVIAMVVSSLLLPFLPLLPLQVLILNLLF SISCLVIPFDSVSKNYVKKPQKWSIKRWPKFVLNFGPILAIIDFIAMGLMFYVICPYLVG SNYHHWVFMTLFYSGIFVESLWTRIMVIHTLRDERFPFFKQHATPVVFLVTIGMAIIGTM LPSSSIAPSLGLAQLPFGYWGIVFLLEVIYILLTTLVKHLYLKKEKF >gi|227862429|gb|ACKR01000094.1| GENE 9 7021 - 8997 2214 658 aa, chain + ## HITS:1 COG:lin0216_1 KEGG:ns NR:ns ## COG: lin0216_1 COG0143 # Protein_GI_number: 16799293 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Listeria innocua # 3 538 4 542 549 714 64.0 0 MADKDTFYITTPIYYPSGRLTIGNAYTTIAADTMARYKRSQGYDTFFLTGTDEHGLKIEQ KAEAQGIKPQEFVDKMAASYKKLWKSLNISYDKFIRTTDKEHVAAVQKIFEKLLAKGDIY LGEYTGWYSVEDEEYFTESQLAEVYKDDDGNVIGGKAPSGHEVRLVKEPSYFFKMSKYAD RLVEYYKEHPEFILPHSREKEMLNNFIKPGLEDLSVTRTTVNWGIPVLSDPKHVVYVWID ALSNYITALGYGSDDDSLFKKYWPADVHLVGKEIVRFHTIYWPIMLMALDLPLPKHIIGH GWVLMKNGKMSKSKGNAVYPESLTSRYGVDPLRYYLMRALPFGDDGIFTPEDFVERINYD LANDLGNLLNRTVSMINQYQAGHVDAVPVAQAEFGKDLQDTAASVINDYRENMDSLHFSK ALDNIWKLVSRANKYIDETTPWALNKEGKKEELSKVMSNLAESLRLIAIMIEPVMTETAP IMFKQLGLNWDNEDAKHLAFGDFDWDVKVIEKPQPIFPRLKMDEEVKYIKDEMAKAKPKK TTRSEQKKGDEITIDDFDKVKIQVGQILSVEPVKGSSKLLMFKLDFGNGKETQILSGIRK FYPDASELLDKKVLAVTNLKPRKMLGHLSEGMLLSSEKHGKIKLALVGDEHAVGAELG >gi|227862429|gb|ACKR01000094.1| GENE 10 8997 - 9764 725 255 aa, chain + ## HITS:1 COG:L87336 KEGG:ns NR:ns ## COG: L87336 COG0084 # Protein_GI_number: 15672669 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Lactococcus lactis # 1 255 1 256 257 247 46.0 1e-65 MEIIDNHTHLNDEPFRGKEQYYLERAKALDVTKVICAGQDPDFNQRAVDLAQRFDNVYAM VGYCPDVAKDYDQQAEDKLIEQLKQPKVVAMGEIGLDYYWDESPRDVQRNVFARQIEVAH DLKMPVDIHTRDAFGDCYNILKNSNLEYGAVLHSFNGGVDWLNKFLDLNVYFSYSGVVSF TKATEVHESAKAAPLDRILVETDAPYLTPKPYRGHQNETGYVRYVAEAIAKLKDIPLEKV ADATYKNTVRVYGLK >gi|227862429|gb|ACKR01000094.1| GENE 11 9751 - 10317 675 188 aa, chain + ## HITS:1 COG:SP1990 KEGG:ns NR:ns ## COG: SP1990 COG1658 # Protein_GI_number: 15901813 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Streptococcus pneumoniae TIGR4 # 5 185 2 186 186 147 46.0 1e-35 MGLNKKNFDAVIVVEGKDDTIRLKQFFPGIETIETNGSAVSDEVLKQIQKLSESRQIIVF TDPDFNGERIRRIVTKAVPDAKQAFITRKEGEPHKKGSLGVEHASKEALEHALSDLHEVE PQKSDLTPAIYRQLGLAGGSGSRKLREQVGIKLRVGYGNSKQFYNRLHTFGVSLAELKAA VKEVENDK >gi|227862429|gb|ACKR01000094.1| GENE 12 10307 - 11191 859 294 aa, chain + ## HITS:1 COG:CAC2986 KEGG:ns NR:ns ## COG: CAC2986 COG0030 # Protein_GI_number: 15896238 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Clostridium acetobutylicum # 13 291 6 274 276 195 43.0 7e-50 MTNNIPIGSPVRTQAIVNRYFVKAKKNLGQNFLVDQTAILGIVEAAGIKKDDQVIEIGPG IGSLTEQLLLAGAKVFAYEVDDSLPTILQNELPKKIDDQPLASRFKLILKDVLKADFKVD ISDFFDFTKPIKVVANLPYYITTPIIFALAESDLHFTSLTLMMQKEVAERLEAQPGSKEY GPLTISVQTEMNVKLALQVSHNSFMPRPKVDSSVVVLTPLKEKPAIENRKHFIWVVKMCF SQRRKTLNNNLKALLPDKTKRDELFAELGVNPRIRPEELTIKQFIKIASFIPAR >gi|227862429|gb|ACKR01000094.1| GENE 13 11253 - 11510 133 85 aa, chain + ## HITS:1 COG:lin0228 KEGG:ns NR:ns ## COG: lin0228 COG4466 # Protein_GI_number: 16799305 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 82 1 82 85 91 56.0 3e-19 MPTSIITIKHKLDSHLGDTLTVVAQAGRKKVTKRRGILRETFPAVFVVDLDQHQNNFKHV SYSYTDLLTKNIALEFDDEAEEAEA >gi|227862429|gb|ACKR01000094.1| GENE 14 11619 - 12449 986 276 aa, chain + ## HITS:1 COG:lin0231 KEGG:ns NR:ns ## COG: lin0231 COG0503 # Protein_GI_number: 16799308 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 268 3 270 272 269 50.0 4e-72 MKRSERLVDMTKYLMERPHTLIALPFFAKRYGAAKSSISEDLAILKHTLASNQDGILETV AGAAGGVRYIPFLGKKHAEAYLSDLSTRIEDPSRILAGGFVYLSDILGNTQDLRKIGELV ATHYAYEEIDAVMTVETKGIALAKAVARFLDVPFVTARKRSKVTEGATVSVNYISSSLSR VSKMELPTRALKKEAKVLIVDDFMKGGGTLTGMEELVKEFDGTIAGVCVLCEADFDKEKL IKNYLSLVKISEIDTAQKLIVAEPGNFLTETDFDRF >gi|227862429|gb|ACKR01000094.1| GENE 15 12496 - 13881 1707 461 aa, chain + ## HITS:1 COG:lin0237 KEGG:ns NR:ns ## COG: lin0237 COG1207 # Protein_GI_number: 16799314 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Listeria innocua # 2 448 3 449 457 491 57.0 1e-138 MEKYVVVLAAGKGTRMKSKLYKVLHKVCGKTMVEHVVDAAQGVNPAEIVTIVGTGAGDVE KVLADKSKFAFQEKQLGTGDAVMTAREELGDNDGATLVVTGDTPLFTTDTFNELFKYHAE KGNAATVLTAEAPNPFGYGRIIRDDQGNVLRIVEQKDGKPEELKVKEINTGVFCFDNKKL FEALKHVNNDNAQGEYYLTDVLEILRNSGERVGAYKMPDFSESLGVNDRIALAQATKTMQ RRINEQHMRDGVSFIDPDTAYIDADVKIGNDTVIEGNVVIKGNTEIGSDCYITSGSRIVD SKIGNNVTVTSSTVEEAEMDDNTDIGPNSHLRPKAIIRKGAHIGNFVEIKKAEIGENTKV GHLTYVGDATLGKDINIGCGTIFSNYDGVKKFHTNVGDHAFIGAGSTLIAPINVADHAFI AADTTVTKDVNKYDMAIGRGRQVNKPDYWHKLPLSQDKEWD Prediction of potential genes in microbial genomes Time: Wed May 25 06:28:17 2011 Seq name: gi|227862421|gb|ACKR01000095.1| Lactobacillus crispatus JV-V01 contig00100, whole genome shotgun sequence Length of sequence - 6769 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 5, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 7 - 66 2.7 1 1 Tu 1 . + CDS 88 - 840 1034 ## LCRIS_00224 putative protein without homology + Prom 853 - 912 9.5 2 2 Tu 1 . + CDS 949 - 2718 2175 ## LCRIS_00225 cell separation protein + Term 2724 - 2785 10.9 + Prom 2819 - 2878 7.8 3 3 Tu 1 . + CDS 2946 - 3920 1268 ## COG0462 Phosphoribosylpyrophosphate synthetase + Term 3936 - 3981 3.1 + Prom 3950 - 4009 11.0 4 4 Tu 1 . + CDS 4082 - 5002 291 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase + Term 5021 - 5049 2.3 - Term 4995 - 5048 14.2 5 5 Op 1 . - CDS 5063 - 5338 341 ## LCRIS_00228 putative protein without homology 6 5 Op 2 . - CDS 5373 - 6746 1329 ## COG1078 HD superfamily phosphohydrolases Predicted protein(s) >gi|227862421|gb|ACKR01000095.1| GENE 1 88 - 840 1034 250 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00224 NR:ns ## KEGG: LCRIS_00224 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 250 1 250 250 274 99.0 2e-72 MKLSHKLVMVSAAVLMGVSPVLGMAENTVSVQAATKSTNGVHNTYGKNSKVKVTKTMKFV DRNGKKTSKTAPKGGSYTIWNVKNIDGQVYYSIQTDLKYWIPATATEGTVTYKSGNTTYT LKSDGKKVTTSTSTKKAVKKTNSNKNTKKVVKESTKKTATKTTKKSNSEKTTKKTSSKKT PVAKAVKITTKNKAYVYDKNGKRVKNYLGTSYIGKKITVKGLGTKTINGVKYYALQPNHY YIKASDVTVK >gi|227862421|gb|ACKR01000095.1| GENE 2 949 - 2718 2175 589 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00225 NR:ns ## KEGG: LCRIS_00225 # Name: not_defined # Def: cell separation protein # Organism: L.crispatus # Pathway: not_defined # 1 589 1 589 589 861 98.0 0 MKLSHKLVMVSAAALMGVAPLLGTAENVNTVQAAPKKTTSKKAASNKITLVRNAYVYDKN GKRLDKYMGSAKYTTIAKGVTVTSTGTKTINGVKYYDLGGGAYIKAVNVDGKAASSTSSL SKGTKAKFVSNSYIYDKNGKRISKYQGKSKFVKGDSVTTYGIQTINGKKYYQLDKKGTAF VRTVNIDGKTTSNQESSVSNDAESIKKYDYSLKKNAYIYDKNGKRINKYQGKSKLLKGAA IDVYGIETIKGKDYYQLDKKGTAFVKASNVTRTVKATSITMKKNAYIYNGNGDTKKKTVK KGKTVKATEARYIGTKLYYKISDNQFVKAANVGKISGPELEPVNEPDGAATVDTGDNTVD PNVTKATTINVAPLYNIKGQPDNVRAFGEGQSQQVSELRYIATSATATPELFYKLSSGRG YLKASDVAVSGKTLTPVNTPEQAREDVTVATAANKAKLLQDINEATSVKNSEAYKLASSD VKAAYDKAISDGTTVNNDATATIAQVNEADAAIVSAKAKLDGKRVAVANMTNLTSDEMAA IIKVVANANNVAESSVQLTTNGSLSISVNGAAQILNLGDYVTQAAVANN >gi|227862421|gb|ACKR01000095.1| GENE 3 2946 - 3920 1268 324 aa, chain + ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 6 315 9 317 317 404 64.0 1e-112 MSYKDDMMIFALNSNVPLAQKIADRVGVPLSKSSVERFSDGEIQINIDETVRGKDVYLVQ STSKPVNDNLMELLIMIDAVRRASARTINIVMPYYGYARQDRKTRAREPITAKLVADMLQ AAVADRILSLDLHAPQIQGFFDIPVDNLMGAPLLADYFLRNGLEKDAVVVSPDHGGVTRA RKLAEFLGCPIAIVDKRRPKANVAEVMNIIGDVKGKRAIIIDDMIDTAGTITLAAQALID AGATEVYASATHAVLSGPAIKRLNDSPIKNLVLTDSINQPAEKKLDKMVGVSVGPLMGDA IKCIQNHEALSPLFNTRYEADKNK >gi|227862421|gb|ACKR01000095.1| GENE 4 4082 - 5002 291 306 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 5 297 6 318 319 116 26 4e-26 MTQYLSFDIGGTNLKYALIDQEGHILEKDRVKTNTENLDAFMQTMYEVADKYQGKFAGIA VCAPGKIDTKNKIIYFGGALPFLDGLNLEETLGKKYDVPVGVENDGKAAALSEQWLGELH DVNTGIAITLGTGVGGGVIVDNRILHGWTFQAGELSWMITNSSIGTRNMAAYAGFSCSAV NMIKKVNLALGNIDLDNGLTAFEAINNGDLRALAVFKRYCRNVAIMILNIQAVINGSKVI IGGGISAQPILIEEINNQFDKILQNNPMLNNQVIKPVIVAAKHGNDSNLYGALYALLLEL NDEEVR >gi|227862421|gb|ACKR01000095.1| GENE 5 5063 - 5338 341 91 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00228 NR:ns ## KEGG: LCRIS_00228 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 91 2 92 92 162 96.0 3e-39 MNRHDLNTDVRTQINPEDEVKAEPKSGYTQVKDLMDTVHGYCMDYTKMSFDFIHENKDLV KDVVKIGCKTAMVACVAGASIAIAKIVSGKD >gi|227862421|gb|ACKR01000095.1| GENE 6 5373 - 6746 1329 457 aa, chain - ## HITS:1 COG:SP1290 KEGG:ns NR:ns ## COG: SP1290 COG1078 # Protein_GI_number: 15901150 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Streptococcus pneumoniae TIGR4 # 12 442 3 426 434 479 55.0 1e-135 MTRFQSEKLKQEVVLRDPVHGYIHIEDKVVLDILKSKEFQRMRRIKQLGPVSYVFPGATH TRFEHNLGVYELTRRICDIFSKKYPSITPGDGLWNDDNRLLVECAGLLHDIGHGPYSHTF EHLFGTNHEKIGQKIITDPNTEINHALKQVAPNFPELVASVIAKTYPNPQVVKMISSQAD ADRMDYLQRDAYFTGVNYGRFDLSRILRVIRPYQNGICFTNNGMHAVEDYIVSRYQMYQQ VYFHRVGRSMEVILHHLLERAQTVYKKGNLQVTPSLTKFLEGNWTLDDYLKLDDGVMETN FSMWTQAQDPILSDLAKRYLYRKPLASVRIDEETKNLLPKLKSLIKQAGFNPDYYTATNS AFDEPYDAYKPTGKNANSQIEIMQDDGSMIELSQLSPLVRALNGTFQGDERFFFPKTMLS HDEDQPQIFDPLYEQFQKYIKNGALRYLRRPKREQKK Prediction of potential genes in microbial genomes Time: Wed May 25 06:28:34 2011 Seq name: gi|227862404|gb|ACKR01000096.1| Lactobacillus crispatus JV-V01 contig00101, whole genome shotgun sequence Length of sequence - 17624 bp Number of predicted genes - 16, with homology - 16 Number of transcription units - 8, operones - 6 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 42 - 467 331 ## LCRIS_00230 hypothetical protein 2 1 Op 2 5/0.000 + CDS 514 - 1032 714 ## COG3343 DNA-directed RNA polymerase, delta subunit + Term 1094 - 1124 0.2 3 1 Op 3 . + CDS 1149 - 2768 2210 ## COG0504 CTP synthase (UTP-ammonia lyase) + Term 2801 - 2848 8.2 + Prom 2814 - 2873 6.6 4 2 Op 1 1/0.000 + CDS 2900 - 4198 1247 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase + Term 4200 - 4247 11.1 5 2 Op 2 1/0.000 + CDS 4260 - 4778 519 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 6 2 Op 3 . + CDS 4778 - 5266 308 ## COG0563 Adenylate kinase and related kinases + Term 5275 - 5311 1.5 7 3 Op 1 . - CDS 5321 - 6745 1612 ## COG4690 Dipeptidase - Prom 6772 - 6831 4.8 8 3 Op 2 . - CDS 6834 - 7646 700 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 7675 - 7734 4.5 - Term 7708 - 7744 4.0 9 4 Op 1 7/0.000 - CDS 7798 - 9084 404 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 10 4 Op 2 . - CDS 9091 - 9669 598 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 9829 - 9888 4.5 - Term 9680 - 9733 16.2 11 5 Tu 1 . - CDS 9903 - 10505 492 ## COG1396 Predicted transcriptional regulators - Prom 10751 - 10810 3.6 + Prom 10638 - 10697 4.6 12 6 Tu 1 . + CDS 10728 - 12278 1906 ## COG0519 GMP synthase, PP-ATPase domain/subunit + Term 12362 - 12408 1.1 + Prom 12473 - 12532 3.8 13 7 Op 1 . + CDS 12775 - 12966 181 ## LCRIS_00242 putative protein without homology + Prom 12969 - 13028 2.3 14 7 Op 2 . + CDS 13132 - 13686 138 ## COG2826 Transposase and inactivated derivatives, IS30 family + Term 13813 - 13860 7.7 + Prom 13867 - 13926 5.3 15 8 Op 1 . + CDS 13974 - 15185 1351 ## LCRIS_00244 protein with YSRIK-signal peptide 16 8 Op 2 . + CDS 15154 - 17289 2359 ## FI9785_83 putative secreted protein + Term 17361 - 17406 5.5 Predicted protein(s) >gi|227862404|gb|ACKR01000096.1| GENE 1 42 - 467 331 141 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00230 NR:ns ## KEGG: LCRIS_00230 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 8 141 1 134 134 251 97.0 5e-66 MFKGGACLTAITIDLTSKITQDDETETFTRHAQGQLTEEGDVTRISYAEEGQIPVKMLLK ENELLIRRGVDSNNYSLMKFIPGEKGNCRYVVGGRRMDMTSVTNLLEYQSQDDGSRKLRV EYDLFNGLYLIGNYAVTLVFT >gi|227862404|gb|ACKR01000096.1| GENE 2 514 - 1032 714 172 aa, chain + ## HITS:1 COG:SPy1895 KEGG:ns NR:ns ## COG: SPy1895 COG3343 # Protein_GI_number: 15675708 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 134 1 134 191 105 55.0 3e-23 MGLDKFKDKNRDELSMIEVARAILEDNGKRMAFADIVNAVQKYLNKSDEEIRERLPQFYT DMNTDGEFISMGENVWALRSWFPYESVDEEVNHPEDEEDDSRKHHKKVNAFLASATGDDD IIDYDNDDPEDDDLDATDDDTDYDEDNDDTDDVLPDGIEGQLSQLNDDDEDN >gi|227862404|gb|ACKR01000096.1| GENE 3 1149 - 2768 2210 539 aa, chain + ## HITS:1 COG:SP0494 KEGG:ns NR:ns ## COG: SP0494 COG0504 # Protein_GI_number: 15900408 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Streptococcus pneumoniae TIGR4 # 2 531 3 530 535 746 66.0 0 MTKYIFVTGGVVSSLGKGITASSLGRLLKNRGLKVTMQKFDPYINIDPGTMNPYQHGEVY VTDDGTEADLDLGHYERIVDVRTSKYSNVTTGKIYQEVLEKERRGDYHGATVQVIPHITN MIKKKIMRAALTTDSDVIISEIGGTVGDIESTPFMEAIRQMRREVGPENVMYIHCTLVPL LHAAHEMKTKPTQHSVAELRSIGIQPNMLVLRAEQPIDQEHKDKISTFTDVPVDRIIESI DAPSLFDVPLNFQKQGMDQKVCDFLHLESPKPEADMEAWKKLDERAKTLKHHTKITLVGK YVELEDAYISVTDALQHAGYLYNTKIDVDKVQAEDVTEDNIAEIMKDSDGLIVPGGFGTR GLEGMITAIKYAREHDIPFLGICLGMQMASVEFARDVLNLEDANSAEAEPNCKNNIIDIM ADKRDEENIGGTLRLGIYPATLKKGTKTRAAYDDQDVIQERHRHRFEFNNEYREAFEKAG MVFSGVSPDNRLVEIIELPKKKFFIAAQYHPEFLSRPQRPEGLFKSFIGAASGLPAQEF >gi|227862404|gb|ACKR01000096.1| GENE 4 2900 - 4198 1247 432 aa, chain + ## HITS:1 COG:lin2697 KEGG:ns NR:ns ## COG: lin2697 COG0766 # Protein_GI_number: 16801758 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Listeria innocua # 3 417 4 414 423 419 54.0 1e-117 MKQMIIHGGKPLQGDVWIGGAKNSTVALIPASILSRTPVTLEGVPRIADVVNLMDLLSEM DVHCDFGETTLRIDPTDIKMSPLPAGKIKSLRASYYFMGALLGRFGKAVVGFPGGDDIGP RPIDQHIKGFEALGASVKNENDQIIITAPEDGLHGAKIHLKMPSVGATMNIIMASVTAQG QTIIKNAAKEPEIIDLATFLNNMGAVIRSAGTDSIRIEGVEQLKAQIPHTIIPDRIEAGT YVALAACIGNGIRIHNIIEEHLDSYLAKVEEMGVVIDSDEDSLYVYPAGDLKMVQVKTDV YPGFATDLQQPITPLLLTAKSGEGVVIDNIYPKRIGHIAQLQKMGANIKVEDNIILAHPT KQFHGAEVTAGEIRAGACLMIAGLMADGTTTIDKAGNILRGYDRVQEKLRQLGADVTIKD DPAVPGILDNIW >gi|227862404|gb|ACKR01000096.1| GENE 5 4260 - 4778 519 172 aa, chain + ## HITS:1 COG:L36177 KEGG:ns NR:ns ## COG: L36177 COG0454 # Protein_GI_number: 15674159 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 3 172 1 167 169 155 43.0 3e-38 MSLIFTRRAQNSDVDKIVQILQDAITFLKKNGSTQWQSGYPNRETVEEDIEKQVAWVLTV DNEVAGYAAVVIGKDPNYAKIDGEWKNNVDTYATIHRIAVASQFRGMHLTQLFLSNIISL TYAQGIHNFRIDTGAKNKIVQHIALSHGFVQRGIIQVDDPINPDRLAYELNL >gi|227862404|gb|ACKR01000096.1| GENE 6 4778 - 5266 308 162 aa, chain + ## HITS:1 COG:BH1014 KEGG:ns NR:ns ## COG: BH1014 COG0563 # Protein_GI_number: 15613577 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Bacillus halodurans # 1 161 1 167 178 113 37.0 2e-25 MKRVLILGSPGAGKSTFARKLQSKTKLPLVYMDQLFWHANKTTVSKHELDEKVKRIVAKP AWIMDGNYQRTLKYRLPKCDTIFWLDYPTEVCLAGVKARKGKPRPDLPWIEEDEDPEFMS YIAKFRTVQRPILVKELQKYPNKQIIVFHSRQEANLFLHKIR >gi|227862404|gb|ACKR01000096.1| GENE 7 5321 - 6745 1612 474 aa, chain - ## HITS:1 COG:L48417 KEGG:ns NR:ns ## COG: L48417 COG4690 # Protein_GI_number: 15672234 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 6 474 3 459 459 511 54.0 1e-145 MKQTECTTILVGKKATIDCSTMIARSEDGGRVIIPEGFKAVNPADQPKHYTSVISKQKID DADLAETPLRYTSAPDVSGKNGIWGAAGINAENVAMTATETITTNSRIQGVDPLLDPSEG GLGEEDFVTLTLPYLHSAFDGVKRVGYLVEKYGTYEMNGMAFSDKDNIWYLETIGGHHWI ARRIPDDAYVIAPNRLNIDTFDFNDSDNFACSADLKDLIEEYHLNPDREGYNMRHIFGSS TIKDAHYNNPRAWYIHNYFDPDFGGTPADQDQPFICHANRLISIEDIKWAESSHYQDTPY DAYGDQGTPEQKKTFRPIGINRNFETHILQIRNDVPAEIAGVQWLAFGPNTFNSMVPFYT NVTTTPEAWQTTPKFNLSKIFWLNKLTAQLGDTNYRVYGELEDAFEQKSLAQCHKIQHDT DKEAKNLSGKELQDKLIAANQKMSDTVYNNTVELLGQMVDEGHGLMTLKYDLLD >gi|227862404|gb|ACKR01000096.1| GENE 8 6834 - 7646 700 270 aa, chain - ## HITS:1 COG:SP1899 KEGG:ns NR:ns ## COG: SP1899 COG2207 # Protein_GI_number: 15901726 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Streptococcus pneumoniae TIGR4 # 9 268 12 272 286 126 30.0 5e-29 MPNLNNQNLDSYIMFYGRQKCQPDEFFQGDNLRKNDIFYYIISGTGTFTSSRHHAVKLKA GDLFYVPRSQTCSFQADHNEPWEYFWIGLAGNGVNESIKASNLPNKNFLRQIQKTAFYQT LDDLYQCLAKKKTLLNNLKISALTYQLFYHLVKDFPNHPPVRKTSKNDQYQIAINYLKQN YTDPTCNIVELCHRLGVSRSFLYALFRKNTKLSPQKYLMQLRMEAAKKELTNTTHNLKQI AKKVGYGDEFTFSKAFKRYSGVSPNAFRGN >gi|227862404|gb|ACKR01000096.1| GENE 9 7798 - 9084 404 428 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 10 419 15 417 447 160 27 8e-39 MAQKEVSHKKAAVLGLQHLLAMYSGAVAVPLLIGTALHFNSTQMTYLVSIDIFMCGLATL IQLFRNKYFGIGLPVVLGCAIQAVAPLEMIGQKFSINTMYGAIIVAGIFVFLIAGWFSKI KKLFPPVVTGTLITVIGLTLIPVAFQNMGGGNAQAKDFGDAKNLIAAFITILIIVVIEVW AKGFLRSISVLIGLIAGTIIAGCMGLVSLTPVTQASWFHLPQFFYFGVPEFEWSSCLTMI IIALVSLVESTGVFFAIGDLLHQDITEEDLKKGYRAEGLAQIFGGLFNTFPYTTFSQNVG LLQLSGIKTKRPIYWAAGLLMAMGLLPKIGALVTIIPDSVLGGAMLVMFTMIAVQGIKML TKVDFENNRNILIVAISIGMGLGVTVYPQIFQTLPQTIQLFLGNGIVVASICATLLNLLF NGRSGANK >gi|227862404|gb|ACKR01000096.1| GENE 10 9091 - 9669 598 192 aa, chain - ## HITS:1 COG:lin1998 KEGG:ns NR:ns ## COG: lin1998 COG0503 # Protein_GI_number: 16801064 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 192 1 192 192 190 49.0 1e-48 MKELVDRIKQDGEVLPGNVLKINSFLNHQVDPQLMMHVGEEFARLFKDEKVDKVLTCEAS GIAPGVMAAYQLHVPMIFARKKKPSTLNDAVYWADVFSYTKKVNNKICVEEKFLHPGEHI LIIDDFVAHGEAVKGMVNIAKQAGCDIVGVGAVVAKTFQGGSEWVEKEGLRFEALAKIDS FENDQVHFEGEE >gi|227862404|gb|ACKR01000096.1| GENE 11 9903 - 10505 492 200 aa, chain - ## HITS:1 COG:SPy1834 KEGG:ns NR:ns ## COG: SPy1834 COG1396 # Protein_GI_number: 15675661 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 63 1 63 195 62 46.0 6e-10 MRLGQKIAALHKKNHLFQEALAEKMNVSRQAVSKWESEQSIPDIEKIVALSELFGVTTDY LLKSGSPSFELNHKDNNLTEELPILSDQQEQGYLTAAQKSASLRALAISLIIRSPAILCF STALAIMLDLGNLTIQLTGCRKIMNKYATLYWLIAVLLYLGYSFITNDWERSWIIWPIAG ILYGIIEKIISLCHNDIAAE >gi|227862404|gb|ACKR01000096.1| GENE 12 10728 - 12278 1906 516 aa, chain + ## HITS:1 COG:BH0607_2 KEGG:ns NR:ns ## COG: BH0607_2 COG0519 # Protein_GI_number: 15613170 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Bacillus halodurans # 202 516 1 315 315 491 73.0 1e-138 MAKNLDDFDKIIVLDFGSQYNQLITRRIRDFGIYSELLPHDLSMEKIKQINPKGIIFSGG PNSVYDNGALKVDPAIFKLDIPILGICYGMQLMSHDLGGKVEQAENKEYGRANITVEDPD SILFNGLPSKQYVWMSHGDLVTQAPKGFEVTASSKNCPIAAIANPDKKFYGIQFHAEVRN SEYGLDILKHFAFEVCGAEANWTMNDFIDMKVDDIRKEVGDKKVILGLSGGVDSSVTATL LHKAIGDQLTAIFVDHGMLRKDEGNQVMQALNKDLGVNIIRVNAQKRFLDKLKGVTDPEK KRKIIGKEFIEVFNEEAKKLKDVDFLAQGTLYTDVIESGTNTAQTIKSHHNVGGLPKDMH FKLIEPLRKLFKDEVRELGEKLGIPHDLVWRQPFPGPGLGIRVLGEVTEDKLKIVRDSDA ILREEIKKAGLQEKIWQYFTVLPGIRSVGVMGDGRTYDYTIGIRAVTSIDGMTADFAQIP WDVLGHISDRIVNEVDNVNRVVYDVTSKPPSTIEWE >gi|227862404|gb|ACKR01000096.1| GENE 13 12775 - 12966 181 63 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00242 NR:ns ## KEGG: LCRIS_00242 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 63 1 63 63 91 100.0 7e-18 MKPLKDELIQSRLDEDELADFDKVKKLLDVKSNSVAIRQMIKDEMRKPEMNGSKVILTLY QRY >gi|227862404|gb|ACKR01000096.1| GENE 14 13132 - 13686 138 184 aa, chain + ## HITS:1 COG:BH2524 KEGG:ns NR:ns ## COG: BH2524 COG2826 # Protein_GI_number: 15615087 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Bacillus halodurans # 5 173 100 270 314 124 42.0 7e-29 MAHVVRIAYKTIYNWIEQGVLDIGVADLPDHGIRRRRAKETRGTFSHGRSIEDRPAEVID RHTSGHFEADTVLSGKRKGQAIATFVERKSRLIIVKRLQGRDSTSITKAILELANQLEDN LKPLTVDHGKEFANYKLIEKQARIPLYFAHAYSPHEWGSNENRNRVLRRFIPKVNRLRKS LMMS >gi|227862404|gb|ACKR01000096.1| GENE 15 13974 - 15185 1351 403 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00244 NR:ns ## KEGG: LCRIS_00244 # Name: not_defined # Def: protein with YSRIK-signal peptide # Organism: L.crispatus # Pathway: not_defined # 1 397 1 380 1898 430 70.0 1e-119 MKRLKFLETKRTPRYSLRKFSVGVASVLLGVTIFGINFTGHSVKAATTESVEDSNSSANS RLQQTNTQKETSATGKVQQSSASNDVTEKVQQTSASNNATANNSTEAATTSQSAPNTQGS AHTDIKSLAAKSAAKLAVMNLMAASGTGTNTGTGTDRNAGDTVDQNNINDQPAKENQKLA NEHNLTSSDNYSSNIYQGKDKNYYKVVTIYGNDYVYHAADIQANGTARGQWATTAEDTKN NINISKEDLGHGKTRWTVVFFPNKGLQNVGGKVNGLVSAKFGIALTNDYQIVGNVDMEVN NETNQKYIYYKFEDSSNSPTSITVQNPPAEVDFSFNPNTDVDSNTGLINSKTLPAYNNKY LQGSYYFTTATNAGIRNLWQTYFEDADERNNAYDGSPLSRWQS >gi|227862404|gb|ACKR01000096.1| GENE 16 15154 - 17289 2359 711 aa, chain + ## HITS:1 COG:no KEGG:FI9785_83 NR:ns ## KEGG: FI9785_83 # Name: not_defined # Def: putative secreted protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 2 618 418 1002 1423 539 60.0 1e-151 MGPPYLGGNHDFHFNNFIIKNKTGVDGLESKDLKDPKAQIPIIYDTLGDRKFNSEANSKG VFSSDNFNQAMEFKSQGDASNVFIDRSQYSSYVISFTTQHTDSHEVELFSGPKNQQFSGI SANIYSYQNGHYNMFSRLYGEQRALDAAGAVVKAKDMIPGWVDANIATAKIHTDYLNNAQ IYALRYKIQNNVTDSNALNNIITEGNSLNDAMKKLGNSIGQYDSDGSFADHKEDTTKESD RYKYANPDKKAAYDNATEVTKALINKDTGAYADQATVEKLTEAENKAWNELKVVLANKIT PTVPATKEPVADTSHLTKDEQDKVQKNVEDANKGNFPEGTTVTVGSDGTATVTYPDQSTD TIKGSDLVRPTEDKDNYDPHGPKNPDDRVPVKDQDHLTDGEKNDVKDEIGKENPDLPKGT EVDVDDKGNATIKYPDGSKDTIPGDQLVQGQKGDTTDAGNITPTVPGDKVTVKDPSHLTD DEKNQVKNNVDNVNKDKFPAGTGITVGDDGTTTVTYPDGTKDTIPGDQLVQGQKGDTTDA GNITPTIPGGKVTVKDPSHLTDDEKNQVKNNVDNANKDKFPAGTEVTVGDDGTTTVTYPD GSKDVIAGTDLVIAAKSEDVPGSKHHSHKNGSNSSQVDGVKGASTANGSIANAGNNLGVK GERDNAIGNNKATSLKTLPQTGTKDTSILGVLGMLLASLGLFVFKKKRDEK Prediction of potential genes in microbial genomes Time: Wed May 25 06:28:54 2011 Seq name: gi|227862401|gb|ACKR01000097.1| Lactobacillus crispatus JV-V01 contig00102, whole genome shotgun sequence Length of sequence - 1987 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 26 - 937 790 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase - Term 1240 - 1301 9.2 2 2 Tu 1 . - CDS 1338 - 1853 388 ## LCRIS_00255 hypothetical protein - Prom 1902 - 1961 6.1 Predicted protein(s) >gi|227862401|gb|ACKR01000097.1| GENE 1 26 - 937 790 303 aa, chain - ## HITS:1 COG:lin2784 KEGG:ns NR:ns ## COG: lin2784 COG1575 # Protein_GI_number: 16801845 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Listeria innocua # 6 303 2 315 319 143 31.0 3e-34 MKKYSTLQKFNALVQIQTIIISALPYIIGSVMASYYYHNFNLVYSLWLFLAVICFHLAVN GHNQYTDYARYKQNHITSYNNILEKFNITKSWARKIIIILTLISVIIGTILSIKVGWIIL LIGILSYLIGYCYSGGPYPILKTPFGEPASGITMGYNITFLGLYINMYNVHPFDNFFWAK AIIVAGPAIFVIANVMLANNICDVAEDVKIGRKTLPYYTGRKTALTILCCYYVLAYIFLI LGIVLKYLPIITLGSLLTIPLVYHTTKTFVKNPHKESTFTGILVNVLLVLISEIIFSLVG LAI >gi|227862401|gb|ACKR01000097.1| GENE 2 1338 - 1853 388 171 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00255 NR:ns ## KEGG: LCRIS_00255 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 171 1 171 171 282 100.0 3e-75 MKSANYTRKHHMYLMNHKNGDVIEVRMDKKNKTFKKIRLYRQDGLGNYYLDPHAEFKDQK SPATKENIVEAGKKVSDHISSAENWHHKVRPIFNAEHKIVDFEPRLHLEHHTKIQNAKRY LRHLERRHADFIFRKNSKTPLLIPWNYIKDMIYEDRNKEMVLAHKVHKLRK Prediction of potential genes in microbial genomes Time: Wed May 25 06:28:57 2011 Seq name: gi|227862399|gb|ACKR01000098.1| Lactobacillus crispatus JV-V01 contig00103, whole genome shotgun sequence Length of sequence - 509 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 6 - 507 269 ## LCRIS_00256 putative protein without homology Predicted protein(s) >gi|227862399|gb|ACKR01000098.1| GENE 1 6 - 507 269 167 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00256 NR:ns ## KEGG: LCRIS_00256 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 107 1 107 125 197 100.0 9e-50 MKKLNIFYYATIWSFIIGICCATYLNLINFIINFVWHVLFDKLPVPSQALPFFICIPFGF IIGILIKRLGSYPLTIEEVLMSVKQEGKINYHNWWKSLTLGLISLAAGGSIGPEASTTVL GSGMVNWLGDRLRLIAYSSDWKWNHFWDTIVSKKQLKKLPKFSSLFK Prediction of potential genes in microbial genomes Time: Wed May 25 06:29:01 2011 Seq name: gi|227862397|gb|ACKR01000099.1| Lactobacillus crispatus JV-V01 contig00104, whole genome shotgun sequence Length of sequence - 333 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:29:01 2011 Seq name: gi|227862395|gb|ACKR01000100.1| Lactobacillus crispatus JV-V01 contig00105, whole genome shotgun sequence Length of sequence - 939 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 910 432 ## lhv_0684 hypothetical protein Predicted protein(s) >gi|227862395|gb|ACKR01000100.1| GENE 1 2 - 910 432 302 aa, chain + ## HITS:1 COG:no KEGG:lhv_0684 NR:ns ## KEGG: lhv_0684 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 2 301 168 467 468 456 76.0 1e-127 TKKKVPVLYLEGDGVVIKGTKSRLEFHRYQVCEGIVNISKKRRKRINAKEFVSLSRLDAL NEAKEYLANTYDLSDTVILSNADGGAGYAKTDFDDIVGLCKRHEHFLDVFHLNKKIKERL YFAPDLQGKLISALEYKYSYDKVKTILTTAESRLIDELNTELNHDYLGRLRNYIDRHWDD IKPFKKRKLTVTKAIGCCESNHRKYTYRVKGQGKKWSKSGAEGMLRILSCIKNRELEFWL SSEFEDSEITVLTEQELKAAARDSLKKRHEVHLGIQHGALTAQVAGNSYLSKLSRNLSHI NI Prediction of potential genes in microbial genomes Time: Wed May 25 06:29:05 2011 Seq name: gi|227862394|gb|ACKR01000101.1| Lactobacillus crispatus JV-V01 contig00107, whole genome shotgun sequence Length of sequence - 224 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:29:06 2011 Seq name: gi|227862391|gb|ACKR01000102.1| Lactobacillus crispatus JV-V01 contig00108, whole genome shotgun sequence Length of sequence - 1133 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 27 - 86 7.4 1 1 Tu 1 . + CDS 116 - 772 558 ## LCRIS_01663 hypothetical protein + Prom 796 - 855 4.0 2 2 Tu 1 . + CDS 877 - 1119 93 ## LCRIS_01663 hypothetical protein Predicted protein(s) >gi|227862391|gb|ACKR01000102.1| GENE 1 116 - 772 558 218 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01663 NR:ns ## KEGG: LCRIS_01663 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 217 1 217 338 419 97.0 1e-116 MTTCPNCGHKISETDDICPNCGFNLKKYRDDFFTDQHQKAKFEEPDEGEKIISRAAYREE FIPEKQNTTVQRMIAWVRKNATLVFLLGVLLLILMSFSRAAGWTGFLALMVWLYIVCDRK DKIEQYTVDKRLTQKIDRIGSDVFNRLDARESKVKAKNREFVQKYPRIENHVREIKNVRK HHFNYVQISVIFTALVSLIVLFTDSGASAYTQRMYCSV >gi|227862391|gb|ACKR01000102.1| GENE 2 877 - 1119 93 80 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01663 NR:ns ## KEGG: LCRIS_01663 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 80 259 338 338 139 98.0 4e-32 MKNTKASQTLAFFLSLIESIFLIYMIFQISSAAHASTGVLAQLTSQLMSYAVSLGASAYF MILASVLTTILAGYNLFKKK Prediction of potential genes in microbial genomes Time: Wed May 25 06:29:12 2011 Seq name: gi|227862387|gb|ACKR01000103.1| Lactobacillus crispatus JV-V01 contig00109, whole genome shotgun sequence Length of sequence - 1801 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 49 - 1431 1530 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 1550 - 1609 7.4 Predicted protein(s) >gi|227862387|gb|ACKR01000103.1| GENE 1 49 - 1431 1530 460 aa, chain - ## HITS:1 COG:SPy1067 KEGG:ns NR:ns ## COG: SPy1067 COG1012 # Protein_GI_number: 15675059 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 4 459 3 459 465 496 53.0 1e-140 MFRYQSINPYTNEEFASYDNSTAAQIDDAINLAHALYKKWRHENPETRSRQLHKIADALR EHEDDLAKMMTLEMGKLLRESREEVELCVSICDYYAKNGVKMLAPTPIESDLGNAYYLKQ STGVIMACEPWNFPLYQVIRVFAPNFIVGNPILLKHAHNVPGSAALTAKIIRRAGAPEGS LINLYPTYDQLSDIIADPRVQGVALTGSERGGSAVAEAAGKNLKKSTMELGGNDAFIVLD DADPQVLRNVLGDARTYNDGQVCTSSKRIIVEKSHYEEVLHTLKNGFSNLKAGDPLEADT TLPPMNSERAKEKLEAQVKKAVDAGAEIFYQYPEIDSKGAFFRPVILTNIDKENPIYDEE LFGPVAEVFVVDDDDDAIQLANDSSYGLGSSVISNDIKRAQNVAAQIETGMTVINGRWIT SGELPFGGVKKSGYGRELSDLGMMAFVNEHLVIDVTKNNQ Prediction of potential genes in microbial genomes Time: Wed May 25 06:29:13 2011 Seq name: gi|227862383|gb|ACKR01000104.1| Lactobacillus crispatus JV-V01 contig00110, whole genome shotgun sequence Length of sequence - 1907 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 625 299 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase 2 1 Op 2 . + CDS 699 - 1202 642 ## LCRIS_01660 deoxyribosyltransferase + Term 1208 - 1257 7.2 - Term 1184 - 1251 11.7 3 2 Tu 1 . - CDS 1290 - 1832 441 ## COG1373 Predicted ATPase (AAA+ superfamily) Predicted protein(s) >gi|227862383|gb|ACKR01000104.1| GENE 1 2 - 625 299 207 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 2 194 131 312 317 119 40 1e-27 LLDIHNYDLPEKLKRNTKLHRVRKNKKKLGRSIEERPKEINKRNEFGHWECDLVLGHKSK DDEVLLTLSERMSREFLILRIPDKTSVSVMQAFKELQRQYSEHWNDIFKTITTDNGSEFA DLSQLEDISQTLVYYAHPYTSCDKGTVERHNGLIRRFIPKGEAIDNYSLQDIIDIETWCN SLPRKILAYHTPDEIFEKELDRIYQTA >gi|227862383|gb|ACKR01000104.1| GENE 2 699 - 1202 642 167 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01660 NR:ns ## KEGG: LCRIS_01660 # Name: not_defined # Def: deoxyribosyltransferase # Organism: L.crispatus # Pathway: not_defined # 1 167 1 167 167 325 98.0 5e-88 MNKQVSTAKIYLGTPFYNDDQRARVDKARALLEENPTVVRVHFPFDQNFVDPDEKNPEIG GIRSMTWRLATYNNDLEGLVNSTCGVFLYDMDNVDDGSAFEIGFMRALHKPVVLVTFTKD PDKDKVMNLMIAQGVTTIIDGNTELDKLANFDFNTVPAKPVTGYKII >gi|227862383|gb|ACKR01000104.1| GENE 3 1290 - 1832 441 180 aa, chain - ## HITS:1 COG:SP0298 KEGG:ns NR:ns ## COG: SP0298 COG1373 # Protein_GI_number: 15900232 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Streptococcus pneumoniae TIGR4 # 1 180 221 401 402 160 49.0 9e-40 MFDSIGSYLSIRKIANTLTSMGHKITPNTVERYINALLDSLIIYDVSRFDIHGKEQLGSL KKYYIVDTGLRYHLLASHKKDRGHIIENIVYLELLRRGYNVTVGSIPNGEIDFVARKNNE IFYYQVSETVLDEKTLERELKPFNKINDHYPKFLLTMNEFGKNDNFNGIKQLNILDWLLE Prediction of potential genes in microbial genomes Time: Wed May 25 06:29:18 2011 Seq name: gi|227862375|gb|ACKR01000105.1| Lactobacillus crispatus JV-V01 contig00111, whole genome shotgun sequence Length of sequence - 6629 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 3, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 75 - 134 6.8 1 1 Op 1 . + CDS 160 - 765 353 ## COG0398 Uncharacterized conserved protein 2 1 Op 2 . + CDS 765 - 1316 530 ## PROTEIN SUPPORTED gi|238852919|ref|ZP_04643320.1| acetyltransferase, including N-acetylase of ribosomal protein + Term 1481 - 1529 7.5 + Prom 1328 - 1387 1.9 3 2 Tu 1 . + CDS 1544 - 2851 1654 ## COG0172 Seryl-tRNA synthetase + Term 2887 - 2939 9.5 + Prom 2870 - 2929 7.0 4 3 Op 1 . + CDS 3051 - 3524 375 ## LCRIS_01654 mucus-binding protein 5 3 Op 2 . + CDS 3575 - 3919 152 ## LCRIS_01654 mucus-binding protein 6 3 Op 3 . + CDS 3985 - 5511 1691 ## LCRIS_01654 mucus-binding protein 7 3 Op 4 . + CDS 5537 - 6571 859 ## LCRIS_01654 mucus-binding protein Predicted protein(s) >gi|227862375|gb|ACKR01000105.1| GENE 1 160 - 765 353 201 aa, chain + ## HITS:1 COG:L114884 KEGG:ns NR:ns ## COG: L114884 COG0398 # Protein_GI_number: 15672877 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 9 195 10 197 201 149 44.0 2e-36 MHLSTKASRKLINIATIVCGVAIVLLVIYWYRLGIFTDQAKMRAYLANKQIVGPIIFVLI QIVQVVIPIIPGGVSLLGGVVFFGPVAGFIYNYVGICIGSIINFFLARHYGRPFILHIVS EETLDKYMKWTENQNKFNWFFALCILAPAAPDDVLCLLAGLTKMKFWTYFWIIILCKPWT IAAYSIGLQFGAKWLLKLMGN >gi|227862375|gb|ACKR01000105.1| GENE 2 765 - 1316 530 183 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238852919|ref|ZP_04643320.1| acetyltransferase, including N-acetylase of ribosomal protein [Lactobacillus gasseri 202-4] # 1 183 1 184 184 208 55 8e-54 MLESKRIYLRPFEEKDAQQLLKWGGNPRYHKMAGFEEYRNLTEAVNGVKQYMSRPESYVV CLRKNNEVIGLVELYERGLDEKSGLLKTKEVGFLLDQSFEGHGYMTEALRLILTYAFKKK KQVEVWAGTFADNEKSQKLLKTLGFQYVYTVDYTQVSALFSFKEKYYLLKKEEWLKINAN TKS >gi|227862375|gb|ACKR01000105.1| GENE 3 1544 - 2851 1654 435 aa, chain + ## HITS:1 COG:L150515 KEGG:ns NR:ns ## COG: L150515 COG0172 # Protein_GI_number: 15673694 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Lactococcus lactis # 1 428 1 422 423 558 64.0 1e-159 MLDIKVIRENLDWSKKKLATRGIKPEELDELVEIDAKRRQDLTKSEQLKAKRNDVSKQIA EKKRNKEDASDAIAAMREVGKEIKDLDKEVAELTEKQNYILLRLPNFPADSDPIGPDDSY NEEVRKWHPTTEFNFKPKAHWDIGTDLGILDWDRASKVSGARFVYYIGAGALLERAVFNF FLDENTKEGYTEIIPPYLVNDASMQGTGQFPKFHEDVYTIVDNDDPDKPRDLTLIPTAEV PLVNYFRNEIIHENKLPINVTALSPAFRSEAGSAGRDTRGLIRMHEFRKVEMVKVCKPDE SWDELEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTYDLEVWMPAQDKYREISSCS NCTDFQARRAQIRYRDEDGKLHLAHTLNGSGLAVGRCVAAILENYQNEDGSVTVPDVLVP YMNGMKKITKESGLI >gi|227862375|gb|ACKR01000105.1| GENE 4 3051 - 3524 375 157 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01654 NR:ns ## KEGG: LCRIS_01654 # Name: not_defined # Def: mucus-binding protein # Organism: L.crispatus # Pathway: not_defined # 1 143 1 143 3552 192 88.0 3e-48 MTFNKNDFEGKQRFSIRKLNIGVCSVLLWTMNTSQTVHADTTDPVKTEEVESAKKTTTDT GNDQTTTADKNDNDTTAQKEVSGTDPLTSKNSTEQNSTKQAEDKKATSPEDTKDVSTQNN KEVSYSAYNKSGDPGQQTNLFTQLGIRKIHLVRVRSL >gi|227862375|gb|ACKR01000105.1| GENE 5 3575 - 3919 152 114 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01654 NR:ns ## KEGG: LCRIS_01654 # Name: not_defined # Def: mucus-binding protein # Organism: L.crispatus # Pathway: not_defined # 1 104 545 648 3552 172 80.0 4e-42 MYIPVKQQARTVTAKYVIAGGDKNGQQFAPDSQIQVFYAQTGSLNVANNTITYGNWQWDQ TAGDSTTPGFKVIYGSWSLPKEAGQTWQVNVPDPGKDYVVVNIRMVKIVLIVLI >gi|227862375|gb|ACKR01000105.1| GENE 6 3985 - 5511 1691 508 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01654 NR:ns ## KEGG: LCRIS_01654 # Name: not_defined # Def: mucus-binding protein # Organism: L.crispatus # Pathway: not_defined # 3 503 2553 3059 3552 492 61.0 1e-137 MELSAQGLDNIEKALGTNYAYPQVAADVTTKGTLTINQGEATVTLNSGDSKTYDAKQTLP SGLNLNKYNVTYDATVYSADGEAQTLKLTADDLQIVGNATNVGTYQVKLSQAGQEKLKQL TGNNGANYKWTFKTTANYIVTAATADAKLNGSNQKTFDGTAVTTAQVNSNGQILVHFTFP GSTTESTYALQDGDYIWNAGSAPVNAGTYTIKLSANGIVNLQKALNQYAGQGNVTLDAED LLGSATYTIKQKDLNVVLDGNSKGADGKTYDGQPATINTQATNFGVFTPTGLVSGEMLNT ANLAAGDYEWVDANGKPISAPTNAGTYYIALTAKGLKKLQDDNPNYAVSESGQFTYVISP AEENVTISGSQESTVPVIDGTNFKVNVPTAITVPAGLTYEFANGIPAESGVYVINLTPES ITALEKANPNYKLNISSKAKFTLDATLTIEFEDTQEGNKQVGQTITKSGVAGSTVDNLDL KLPENYELAPDQELPTSSDFRRSKETDR >gi|227862375|gb|ACKR01000105.1| GENE 7 5537 - 6571 859 344 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01654 NR:ns ## KEGG: LCRIS_01654 # Name: not_defined # Def: mucus-binding protein # Organism: L.crispatus # Pathway: not_defined # 11 344 3189 3552 3552 538 83.0 1e-151 MVTGKLVANSEVTATYTVNTQTGKISYVDSDGKEVGQTPLSGKTSETVDVNPQALAGWKI VSGQDISKTVVATADGIPTVTVRVEHDTIIVTPETPPRDVPTGPVQGDPSKNYDHLDTLT KTPTRIITVITPSGGKLITTQKVTFDKVTGKVTYSEWRVDGNTQWDAYTAPTFSGYTASQ SKVAAEKVSVDTADSNIKITYKQDEVPTPEPEPQPKPKPNPEPKPDKPAKPNKESEKKHN HSKANKKGYDSNNNPKHEGMPTGRKKRANGPVKAADIESGKRTIGKTERKQLANKLNAKP KSVQDLLPQTGSEHKHTLGLIGTLLAGLGWISLLGVEKRKKKDE Prediction of potential genes in microbial genomes Time: Wed May 25 06:29:35 2011 Seq name: gi|227862373|gb|ACKR01000106.1| Lactobacillus crispatus JV-V01 contig00112, whole genome shotgun sequence Length of sequence - 234 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:29:35 2011 Seq name: gi|227862371|gb|ACKR01000107.1| Lactobacillus crispatus JV-V01 contig00113, whole genome shotgun sequence Length of sequence - 240 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 57 - 224 82 ## LCRIS_00615 putative protein without homology Predicted protein(s) >gi|227862371|gb|ACKR01000107.1| GENE 1 57 - 224 82 55 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00615 NR:ns ## KEGG: LCRIS_00615 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 55 1 55 55 80 94.0 1e-14 MNESLPDIRFVDALVYLISELKELKQNSFEKIDEVINDFINQLPRFIQIALKQII Prediction of potential genes in microbial genomes Time: Wed May 25 06:29:43 2011 Seq name: gi|227862351|gb|ACKR01000108.1| Lactobacillus crispatus JV-V01 contig00115, whole genome shotgun sequence Length of sequence - 21158 bp Number of predicted genes - 19, with homology - 19 Number of transcription units - 12, operones - 6 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 185 - 598 461 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 728 - 787 6.7 + Prom 514 - 573 8.4 2 2 Tu 1 . + CDS 660 - 1376 383 ## LCRIS_00058 hypothetical protein 3 3 Op 1 . + CDS 1505 - 1879 320 ## COG3410 Uncharacterized conserved protein + Prom 1883 - 1942 7.4 4 3 Op 2 . + CDS 1973 - 3136 792 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 3141 - 3175 2.0 5 4 Op 1 . - CDS 3171 - 5999 2387 ## COG1061 DNA or RNA helicases of superfamily II - Term 6017 - 6058 6.5 6 4 Op 2 . - CDS 6065 - 7426 1523 ## COG0531 Amino acid transporters - Prom 7503 - 7562 6.0 7 5 Tu 1 . - CDS 7581 - 8408 836 ## COG0708 Exonuclease III - Prom 8435 - 8494 7.7 - Term 8887 - 8934 4.7 8 6 Op 1 . - CDS 8963 - 9523 801 ## LCRIS_00053 putative protein without homology, LPXTG-motif cell wall anchor 9 6 Op 2 . - CDS 9462 - 9713 192 ## LCRIS_00052 putative protein without homology - Prom 9801 - 9860 6.8 + Prom 9791 - 9850 9.3 10 7 Op 1 3/0.000 + CDS 10071 - 11084 1477 ## COG1052 Lactate dehydrogenase and related dehydrogenases + Term 11101 - 11159 9.7 + Prom 11142 - 11201 10.3 11 7 Op 2 . + CDS 11225 - 12394 420 ## COG0477 Permeases of the major facilitator superfamily + Term 12397 - 12434 4.0 - Term 12385 - 12422 1.0 12 8 Tu 1 . - CDS 12439 - 13257 833 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 13278 - 13337 2.9 13 9 Op 1 . - CDS 13455 - 15380 1580 ## COG0480 Translation elongation factors (GTPases) - Prom 15402 - 15461 5.6 - Term 15385 - 15427 7.5 14 9 Op 2 . - CDS 15463 - 16320 1050 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 16450 - 16509 5.9 + Prom 16332 - 16391 3.3 15 10 Tu 1 . + CDS 16433 - 17302 827 ## COG0598 Mg2+ and Co2+ transporters 16 11 Tu 1 . - CDS 17299 - 18006 665 ## COG1011 Predicted hydrolase (HAD superfamily) - Prom 18038 - 18097 11.0 + Prom 18078 - 18137 10.1 17 12 Op 1 9/0.000 + CDS 18373 - 19365 1121 ## COG2984 ABC-type uncharacterized transport system, periplasmic component 18 12 Op 2 13/0.000 + CDS 19362 - 20258 1032 ## COG4120 ABC-type uncharacterized transport system, permease component 19 12 Op 3 . + CDS 20255 - 21016 192 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein Predicted protein(s) >gi|227862351|gb|ACKR01000108.1| GENE 1 185 - 598 461 137 aa, chain - ## HITS:1 COG:SP1549 KEGG:ns NR:ns ## COG: SP1549 COG0242 # Protein_GI_number: 15901392 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pneumoniae TIGR4 # 4 137 3 136 136 115 46.0 3e-26 MTAQKIIHNRLFLRQKSDLAGKNDLQVAINLRDTLLANRGKAAGLAANMIGQTKQIIAFY AGPLPFVMLNPRIIQKKQMYLASEGCLSLEGERNVQRYEEITVTYQNMELETVTQTFGDF IAETIQHEIDHCNGILI >gi|227862351|gb|ACKR01000108.1| GENE 2 660 - 1376 383 238 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00058 NR:ns ## KEGG: LCRIS_00058 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 238 1 238 396 461 99.0 1e-129 MNNQASFKLSPYHQLNQEQSLLVQKILHFSITHCSNKNHPAVFTIYGEAGTGKSVVLSAL FDQLQKLNHQTGSQLYKTQNYFLVNHPELLKVYKQIAGPIKELYKKNYMRPTSFINQMDK KQTSADVVVIDEAHLLLSQPDHYNNFYHDNQLEEVIKRSKVIILVFDENQVLRMKSFWTR KRLEAITHHYPHEDYQLHHQFRMMAPDSLIEWFNFFTHNKLMPLKKEMWHNYDFRIFT >gi|227862351|gb|ACKR01000108.1| GENE 3 1505 - 1879 320 124 aa, chain + ## HITS:1 COG:BH3996 KEGG:ns NR:ns ## COG: BH3996 COG3410 # Protein_GI_number: 15616558 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 2 119 67 182 188 105 46.0 2e-23 MLPWDQYNYTSTPLAEIPTTINEVGSIYTCQGFDLNYAGIIIGPPISLIPRTNQLKVNLD KITDVEMFKKRNDLTNSKEKIEYEEKMVMNSLNVLFKRGIRGTYLYAHDPALRAKLAALF QQAS >gi|227862351|gb|ACKR01000108.1| GENE 4 1973 - 3136 792 387 aa, chain + ## HITS:1 COG:SA0909 KEGG:ns NR:ns ## COG: SA0909 COG1680 # Protein_GI_number: 15926643 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Staphylococcus aureus N315 # 53 367 90 388 397 85 26.0 2e-16 MKKSIIGLATAALLTTVPAFAITEPPQVQASSYFKTEMRNFVRNTLAQNNTRGSIVIIKN GQPQQISYGYAWYGKKVGNGNDNVVYPTASLQKVVTAAMIIQLMNENWHTSQKFTQNTKI SRWYPNLKNADNITIGQLMTHTSGIQATNTELDRGKVLSENDAINWAIDNTNNGTQGTPG TYFYNNTNYLLLAGIIIKISGQSYENNFNNRIINKLGLANTFLYQDIPSWKTDPISYVWN NGKNYQDAEYVKKTLASQLPGAGNMFTTPMDYYKIQLGLTNGSILSKSDFYYLTHLKSAT TNYSGGLHLDDDHTKSAYGSLSNTHFGNWIKMTTDNRYGIIMFLNQVSGDETAQKNIGTK ILDHIKPRMFDKDNNQDDQDLINISGN >gi|227862351|gb|ACKR01000108.1| GENE 5 3171 - 5999 2387 942 aa, chain - ## HITS:1 COG:Cgl1126_2 KEGG:ns NR:ns ## COG: Cgl1126_2 COG1061 # Protein_GI_number: 19552376 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Corynebacterium glutamicum # 183 940 1 781 789 544 39.0 1e-154 MADAMRDAILNGFVDQNYLGSEELGPKILANNQQERIWQNLRQELYSCKSFTWAVAFITQ DMLVPFKVIMADLAKNGISGTIITGDYLGFNNPRVFTELQKIPNLEVRIANKAGFHTKGY LFDHENYQTVIIGSANFTRSALLANYEWALKVSSKKQADLTAQLVDKIADLKQDSFVLNS AWLTDYRKNWVKPERVATDRHQTKILPNKMQKAALKQIEALVTSGEKRGLVVSATGTGKT YLGAFAVKKYQPRRFLYIVHREQIAKKSLESFYRVIGGPRSDYGLLTGNRHNLQAKYLFA TVQTISQPEMLANFNSDEFDYILIDEAHRAAAPSYQRLLHYFKPNFWLGMTATPERMDEQ NVYQIFDYNLAYEIRLRDALEEKMLAPFHYVGVQDYEADGVVIDETTDLRYLASTSRVDY VLKELDYYGYCGTKAKGLVFCSRQDEARELAWLFSQKGHPAVALTNEDNEKRRNEVVASL VKGEIGYIVAVDLFNEGIDIPALNQIVMLRNTQSSIVFIQQLGRGLRKYPGKDFTVVLDF IGNYKNNYMIPLALNQDTSRSKDQAKRETRLPSFIDVSTINFSKIASEKILASLDSVKLD GMRELRQSYHDLKNKLGRVPLLFDFYQYGSVAPIVFAQNHGLASYADFLGKMGEDVNLSK YENEVLSFVTKELLNGKRIHELLLLEMLLEQDIVKQEDYLAQLKRHHAYVNDELLASVDA ILSLDFFDIKQGKTTKKAQYGKLPLVERSNLFDYQLNGSLRSALDQHDFKNLFVDAIKTG LALNQEYDNQRQFTLYQQYDRKDACRLLNWPKDVSAPMYGYRVGEQDTPIFITYHKDDHE KRNALYRNTLADGRSLRWYTRVPRHLDSDEVQRLLNTRGMNLHIFVKRSDADGKQFFYLG KAKIQADSVREELLGVKKKPAVGMNLMLKHPLSESMHELLFE >gi|227862351|gb|ACKR01000108.1| GENE 6 6065 - 7426 1523 453 aa, chain - ## HITS:1 COG:L125001 KEGG:ns NR:ns ## COG: L125001 COG0531 # Protein_GI_number: 15673273 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 1 449 14 462 503 276 35.0 8e-74 MTSSMVISVDELAPFGKTGATALFYLLIAGIAWFIPITQMAGEMASIDGWEKGGIFTWVK GSLGDKTGWTAMFYQWIHITVGMDTMMYVIIGALSITFGTPWFNTTPIVRFILMMVILWG ATAIQVIGVRKIGRIAEWLFILGIATPVILLIISFFVYVIQGHPLHMTINWNTVIPHKLN GNTLVAFVPFMLAFCGGEASAPHVKNLDHIKSYSKVMLGLAVTAICFDLLGSMAIGMTVP KDQIENSTGFVYTYGKLLTSIGLPGDLLQKIVGIMLACGIIGELGNWIAGPNQGMYEAAK EGYMPKFFAKTTKHGVPLRIMVLQSSIVTISALLITFTSGADADFAFNVSLAATTAQYLM VYMIMLIAYMVLKRKHEDYHRMYYMSKNPNLSIAIAVLALIITVIAFFVTFVPAQGTPSN LRHVYVWTLIGMCAIVSILPLILYRWHEKWQSQ >gi|227862351|gb|ACKR01000108.1| GENE 7 7581 - 8408 836 275 aa, chain - ## HITS:1 COG:SP1845 KEGG:ns NR:ns ## COG: SP1845 COG0708 # Protein_GI_number: 15901674 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Streptococcus pneumoniae TIGR4 # 1 275 1 275 275 393 70.0 1e-109 MILISWNIDSLNAALTGTSARAEETRQVLTKIHDANPDIIAIQETKLRATGPTKKHKEVL AEKFPEYDYVWRSSEEPARKGYAGTMYLYKKGLTPAVSEPIIGAPEPMDHEGRIITLEFD KCFVTQVYTPNSGSGLKRLAERQVWDQKYIEYLQKLDEKKPVLASGDYNCAHTEIDLKHP ENNHHSAGFTDEERVDFTNLLNAGFTDTFRKVHGEITGVYSWWAQRVRTAKANNSGWRID YWLVSNRIADKVVRSEMIDTGKRADHCPILLEINL >gi|227862351|gb|ACKR01000108.1| GENE 8 8963 - 9523 801 186 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00053 NR:ns ## KEGG: LCRIS_00053 # Name: not_defined # Def: putative protein without homology, LPXTG-motif cell wall anchor # Organism: L.crispatus # Pathway: not_defined # 8 186 1 179 179 214 98.0 1e-54 MQSKKLIMFQIKDKTYPDGTKSTATVPVTVIAPNVPDVIYVPKGDKFPDPSTVVTNSNDI KDKIPDTTYTWKTTPDTPNTKVVINYKANNPGTPDTPVTPPVDPGDNPATPVTPPVKPEQ KPTTPTPHATKTPAKDNGGKKTVASEQKSTLPQTGKKDNVALTAIGVAIAAAGSLLGLAD SKKHRS >gi|227862351|gb|ACKR01000108.1| GENE 9 9462 - 9713 192 83 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00052 NR:ns ## KEGG: LCRIS_00052 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 83 1 83 83 141 98.0 6e-33 MHFKGESQQHFSLRKLTIGVASVIIGTTFMFFGGHAVHADDLSRDAEQTSSVVQKQSSEK IDVDAVKEADNVSNQRQDLPRRY >gi|227862351|gb|ACKR01000108.1| GENE 10 10071 - 11084 1477 337 aa, chain + ## HITS:1 COG:SA2346 KEGG:ns NR:ns ## COG: SA2346 COG1052 # Protein_GI_number: 15928138 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 321 1 322 332 222 37.0 8e-58 MTKIFAYAIRKDEEPFLNEWKDAHKDIDVDYTDKLLTPETAKLAKGADGVVVYQQLDYTP ETLQALADAGVTKMSLRNVGVDNIDMDKAKELGFEITNVPVYSPDAIAEHAAIQAARVLR QDKRMDEKMAKRDLRWAPTIGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFKN PELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKDGVVIVNCSRGPLV DTDAVIRGLDSGKIFGFVMDTYEDEVGVFNEDWEGKEFPDKRLADLIDRPNVLVTPHTAF YTTHAVRNMVVKAFDNNLKMINGEKPDSPVALDKNKF >gi|227862351|gb|ACKR01000108.1| GENE 11 11225 - 12394 420 389 aa, chain + ## HITS:1 COG:TM1336 KEGG:ns NR:ns ## COG: TM1336 COG0477 # Protein_GI_number: 15644089 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Thermotoga maritima # 16 357 17 359 390 85 26.0 1e-16 MLKKKSYFFSRAVGGLANSLFSMVFIWWLQTSTKSSFVVGIAEAIFSTTAALSIFYGPII DHYSFKRTSYYSILVQTVFLFATTIAVYQLSKSYILALICAGIVSVCDEFFNPADRAILK ETTADDQELNNLISKVSNIDQLVNVAGTALSGFLLTFLISANVMLICSLLSLISFVFLFY ALKEIKDRPKVKKAEAKYLNQILNGYKFIKTNYFLSHYFWSSILYSFVTPAMAILLPRIA QQNGQAGLYSMFYISFMIGFVIGATIAGRLSVRVKTIGFTWIASAVPLLLIIFFSNNWLI FTGLIFLFGLMTSIHNILAESLIQITADDEILGRVLTTIRTSTSIGGPISSIVAGILLDS SGETVLILACGFIILISGLNIFRAVNKAN >gi|227862351|gb|ACKR01000108.1| GENE 12 12439 - 13257 833 272 aa, chain - ## HITS:1 COG:lin0440 KEGG:ns NR:ns ## COG: lin0440 COG0561 # Protein_GI_number: 16799517 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 7 270 3 265 270 158 33.0 1e-38 MTQIPFKAVAVDLDGTFLTEKKTFDHALFAKVLRKLQANQIPFICATGNQLIRSHEYFDE FTNEVDYVSENGAILEADGKVFKRIAIDYDTAQKLLHFIQTEYPEAIIMVSAQHHCYILT SMDQADKDDIRIYYRDVQEIDQFTDIDPADAILKVCLTADDELAQVIQDRFNEKYGDCIR GTSSGNMTIDLVHKGINKAKGVDDMLKHYGIAQKDLIAFGDGENDIDMLKACGYSYAMKN ANAKAKAVAKYEAPTNDENGVLKVLAKYLDID >gi|227862351|gb|ACKR01000108.1| GENE 13 13455 - 15380 1580 641 aa, chain - ## HITS:1 COG:CAC0854 KEGG:ns NR:ns ## COG: CAC0854 COG0480 # Protein_GI_number: 15894141 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Clostridium acetobutylicum # 5 630 4 637 644 477 39.0 1e-134 MKKITTGIVAHVDAGKTTLSEALLYKAGNLRTLGRVDNGDAFLDTDQLEKKRGITIFSHE AKLTTDDLEITLLDTPGHVDFSAQTEETLSVLDYAILVISITDGVTSYTRTLWHLLKRYQ VPVFIFVNKVDAIGADRGMALVDIQKNLSESCVDFSKIDDEFYENVAATGDALLEKYLDS GAIYDQDVQNAIVQRKVFPIYFGSALKLTGITEFLAGFSKWTKEKEFSDKFAARCFKISH DAKGERLTWLRILGGSLKAKTELAGEKINQLRSYNGEKFATITEAAAGEIVAATGLTKTY PGQGFGVGDAPTALLKPVLTYKVNPQDNDLHACLKALQTLEDEDPQLHVTWSEHLQEIHV QVMGKIQLEILEQLMQERFGLNIVFEQGSILYQETITKPIEAVGHFEPLRHYAEVHLLLE PLPRNSGIVFENKCSLEVLTKNWQHQIMTALKSKEHLGVLTASPITDMKITLIGGKGSIV HSVGGDFREATYRAVRQGLMEEKIRQQTILLEPWYDFRLEIGKDQVGRALNDIQRMNGKF STPENIGERTVISGSAPVAEMQDYATEVRNYTHGEGNLECVVSGYLPCHNAAEIIEEKNY DPVSDLENTPNSVFCSHGAGHTVTWDKVPETAQYPYTYPLD >gi|227862351|gb|ACKR01000108.1| GENE 14 15463 - 16320 1050 285 aa, chain - ## HITS:1 COG:L66233 KEGG:ns NR:ns ## COG: L66233 COG0656 # Protein_GI_number: 15672250 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 5 285 2 281 281 325 59.0 9e-89 MELHSLTDTYTLNNGVKIPVIGFGTWQTPSGEVARESVEAALEAGYRHIDTAAAYGNEES VGEAIKRSGVNRHELFVTTKLWNSDHGYDKTKKAIDTSLEKLDLDYLDLYLIHWPNPVAM RDNWAELNAESWQAMEEAVKAGKIRAIGVSNFRKHHLDELMKTAEIKPVVNQSYLNPSDL QPEVTAASKEYDLLNEAYSPLGTGGLLGNEVVNAVAENYGKSPAQILIRWSLQHGFLPLP KSVHPKYIAANGDVFDFEISPEDMKKLDGLRGASKLANDPDEVNF >gi|227862351|gb|ACKR01000108.1| GENE 15 16433 - 17302 827 289 aa, chain + ## HITS:1 COG:CAC0294 KEGG:ns NR:ns ## COG: CAC0294 COG0598 # Protein_GI_number: 15893586 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Clostridium acetobutylicum # 123 285 149 312 315 75 26.0 1e-13 MLTNSQNIILKDQLTQNDIDHLIKKWDLDPTIFTYPNSSIEVARFIPIDSNKLKNGHLLV SFDLLSNDLPIEQELIPIFTIFDQNHLFIGTTRSLSELKPQENIIETIFQSLCIQIKHLH AELVTIKQKIDHLDQAARRTTKTKELKKVTDLTRQLVYLKHTLDDQTPSLEEFGNYLVEN KLANQARVKSIMTKQKRITKMIHVYTDLLNSISGLFTAMMDSHLNHLMKYLDSAALVIAL PALISGIWGMNVGGLPGKENENGFWILIIFVSLLTIGWGIFLKSKKYND >gi|227862351|gb|ACKR01000108.1| GENE 16 17299 - 18006 665 235 aa, chain - ## HITS:1 COG:BS_yfnB KEGG:ns NR:ns ## COG: BS_yfnB COG1011 # Protein_GI_number: 16077800 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Bacillus subtilis # 2 227 3 227 235 129 34.0 6e-30 MRYQQIIFDVDDTIIDFAATEDFALHSLFNAHHWPLSAELQRQYHSYNQGLWRQLEQGEL TYEELSEMTFHDFILDHFGIEIDGKKAMDEYRSYFGEAHQLLPGVEDTLKFAKKQGYKLT VLSNGEKFMQNHRLELAGVKKYFDLIVTSEEAHYSKPNLHAFDYFFSRTEIGPSETVFFG DGLQSDILGAEKYGFDSIWYNHRHRKNTLHLHPKFVVETYPELVKLMQNDFEKKY >gi|227862351|gb|ACKR01000108.1| GENE 17 18373 - 19365 1121 330 aa, chain + ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 2 322 14 339 344 262 44.0 6e-70 MKRLIGTIIALFAFLAVAFVSEVNKKNAEKKTPTVGILQTMSHPALDQIHRGIIQGLKDE GYVKGKNLKIDFQNAQGDQSNLKSMSDRFSQENATVTIGIATPAVQSLANTSGNIPVVMG AVSDPLGAHLVKSLAHPGGKITGVQDRQPIASQLALMQEILPKAKNIGVIYTSSDDSSAS EYREFRRLAEATGLKVIPYTITSTNDIEQVAQTMVGKVQAVYVPTDNTVASGIATLLKAT NSAKIPVFPAADTMVKSGGLATRCVSQFDMGILTGQMAGQILHGKNPAALPVRRVTHYET VINEKAAHELNITIPNSVIQAAQKKGRIIK >gi|227862351|gb|ACKR01000108.1| GENE 18 19362 - 20258 1032 298 aa, chain + ## HITS:1 COG:SPy1018 KEGG:ns NR:ns ## COG: SPy1018 COG4120 # Protein_GI_number: 15675019 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 3 285 1 281 289 250 53.0 2e-66 MSLITSSIGQGLLWGILALGLYLTFRILNFPDMTVEGTFPFGAAICVSALVHGVNPLAAT ILSFFAGMVTGLVTGLLYTKGKIPVLLAGILTMTGVYSVNLRILGKANVGLLNKNTLLNG QLLQKLPINFPTIVVGLIIAIIVIVLLAVFLDTDLGQAFIATGDNEKMAQSLGINTDNMK ILGLMLSNGLIGLAGGLLAQNGGYADVNMGIGTMVIGLAAIIIGEVVYGNLSLTARLVAV VIGSIIYRLILLLVLQLGFSTNDFKLISAIILAICMMLPLFEQKFRTRKLLKKGVEKP >gi|227862351|gb|ACKR01000108.1| GENE 19 20255 - 21016 192 253 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 233 1 217 311 78 28 3e-14 MSTILDLQNITTTVNAGTNEEKQILKNINLKLEDGDFVTLLGTNGAGKSTLLNIINGSIF PTSGKILLKDQDLTNLSEVKRAKYIAQVFQDPKMGTAPRMTVAENLLLATKRGEHRGLRL RGLDKHMQEFKRQAAQLPNGLNERLNTFVGNLSGGQRQTLSFLMATIKRPDLLLLDEHTA ALDPNTSRELLELTDKVVQEEHLTCVMITHQLKDAIKYGNRTIILNNGRIVFDVKGDDKK RLTEEDILQYFTD Prediction of potential genes in microbial genomes Time: Wed May 25 06:29:56 2011 Seq name: gi|227862340|gb|ACKR01000109.1| Lactobacillus crispatus JV-V01 contig00116, whole genome shotgun sequence Length of sequence - 7378 bp Number of predicted genes - 8, with homology - 7 Number of transcription units - 6, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 38 - 1372 1404 ## COG0477 Permeases of the major facilitator superfamily - Prom 1407 - 1466 6.5 + Prom 1364 - 1423 6.8 2 2 Tu 1 . + CDS 1556 - 1738 184 ## + Term 1750 - 1780 4.3 - Term 1738 - 1768 4.3 3 3 Op 1 . - CDS 1772 - 2344 503 ## LCRIS_00035 esterase 4 3 Op 2 . - CDS 2344 - 3393 863 ## COG0628 Predicted permease - Prom 3439 - 3498 6.6 + Prom 3456 - 3515 9.1 5 4 Op 1 3/0.000 + CDS 3575 - 4207 720 ## COG0747 ABC-type dipeptide transport system, periplasmic component 6 4 Op 2 . + CDS 4259 - 5335 1181 ## COG0747 ABC-type dipeptide transport system, periplasmic component + Term 5432 - 5486 9.2 + Prom 5833 - 5892 2.6 7 5 Tu 1 . + CDS 5962 - 6687 340 ## COG3464 Transposase and inactivated derivatives + Term 6737 - 6778 -0.6 - Term 6629 - 6675 11.1 8 6 Tu 1 . - CDS 6806 - 7378 603 ## LCRIS_00029 mucus-binding protein Predicted protein(s) >gi|227862340|gb|ACKR01000109.1| GENE 1 38 - 1372 1404 444 aa, chain - ## HITS:1 COG:NMB0388 KEGG:ns NR:ns ## COG: NMB0388 COG0477 # Protein_GI_number: 15676302 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Neisseria meningitidis MC58 # 2 442 7 448 451 570 68.0 1e-162 MEEKKTGLPTLASTTIWMISLGYLGVQIAFTLETSQMSRIFQTLGADPTKLGWFFILPPL AGLVVQPGIGSLSDRTWIPKIGRRLPYLLVGMIFAVITMILLPNVGSFGLGYGSIEALIF GAVAIAILDVASNMAMQPFKMMIGDMVNDEQKSYAYGIQSMLSNFGAVIAAFFPFLLTSL GVANTAKKGVVPQSVIISFYVGAAVLVITSLFTIFRVHEYDPETYARYHGIKESDNQEGG GWIELLKKAPKVFWQVSLVQFFCWISFQYLSTYATGAIAQNVWNTTNASSAGYQIAGNWF GVLTAVQSIAAVVWSYVLAKVPNNHHKLGYGISLLLGGVGYTSIFLIHSQGFLILSFILI GISWAGMNTYPLTMVSNALSGKHMGTYLGLFNCSICLPQIVASLLSFMIFPMVGNSMPAM MLITGISGFLGALSVLAIKETYVK >gi|227862340|gb|ACKR01000109.1| GENE 2 1556 - 1738 184 60 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLSLLLTLLLLWLFFKLGIGLIKIIGFLLVVGIMFFFFAYLLIPFLAIALAGSLLWATLK >gi|227862340|gb|ACKR01000109.1| GENE 3 1772 - 2344 503 190 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00035 NR:ns ## KEGG: LCRIS_00035 # Name: not_defined # Def: esterase # Organism: L.crispatus # Pathway: not_defined # 1 190 1 190 190 378 98.0 1e-104 MRVLLTGDSIIARQEGKNEPHLNWNLHQLLPDIEIENTAVSGINSGAFFAKLNELVLSVK QCDNLVILLGTNDLAMHKQVPARQFKQNMEIISSAIICQYYPPHVLLVSPPAVDEAKQRV RNNTLVAEYAQIVKEVAHEYHFRYADLAQAMRDTGDLSEICQGVKNDGLHFGDRGYEILG KLIAENLKQM >gi|227862340|gb|ACKR01000109.1| GENE 4 2344 - 3393 863 349 aa, chain - ## HITS:1 COG:lin0948 KEGG:ns NR:ns ## COG: lin0948 COG0628 # Protein_GI_number: 16800017 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 11 346 5 338 348 240 41.0 4e-63 MLEENMDTAWQKFKNNIPLRRFVVLLLIIACLYEIRAMMNTVLLTFIFTYVIVHLIHLVQ RYFPKIPTGLIVAVTYLIILALLYFVVTIYLPMLVGQISKMVKSVMAFYESNESSRLASH VTRYISKGEIVTQAKRVGTFALHTVTNFGSLTIATFMSLILSFFYTIELDRMIEFSKLFV KSGYFKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMIGLAFMHMPQIIALGLMV FILSLVPVAGVIISLIPLSIIGYSVGGIRYVIYIFIMIMIIHAIEAYVLNPKFMASKTEL PIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVLGIKSAKKSKKKANK >gi|227862340|gb|ACKR01000109.1| GENE 5 3575 - 4207 720 210 aa, chain + ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 1 210 1 212 600 167 47.0 1e-41 MSKAKRYFGALALVSGAALSLVACGNNKNSKNNNADETHHKFSQTVPVKSVKKGGTLNYA IESDSPFTGIFLPELSDTATDSEVAEPGQEGLFSVNDQYKINNKGAATFKLDRKAKTVTI EVKKGVKWSDGKQVNAKDVEYAYEIIANKDSKSQRYTDSLADIVGLAEYHEGKSKKISGI EMPDGEDGRKVVIHFKQMKPGMLQSGNGYF >gi|227862340|gb|ACKR01000109.1| GENE 6 4259 - 5335 1181 358 aa, chain + ## HITS:1 COG:BH3636 KEGG:ns NR:ns ## COG: BH3636 COG0747 # Protein_GI_number: 15616198 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Bacillus halodurans # 2 344 245 588 610 252 37.0 9e-67 MSSDKVRKQPLFYGPFRVSKLVRGQSVTWERNPHYWRGTPNLEKVSMTVIGTNSVTQAIK SHKFDIAGVVNTQWDDVKNATDTNFIGKVPLSYNYLGFKVGKWDKKSGKNVENKNSKMDN PSLRKAMAYAMNVDAVAKRYYHGLAFRVNTLIPEQFGDYTDKSIKGYPYNLKKANELLDK AGYKKKGEYRVQPNGKKLVINLAVRNNSTTAEPVWRNYIQQWKKVGLDVKFVGGRPMEFN NWVQAVQSDDPRIDVFEGGWSLSSEPSPNDLYNEAAPYNFARFVSPKQTKLLADIDSEKA FNPTYRANAFKKWQKWMYDEAYVVPTTNQYSITAVNKKVTGWSLKPSANTWFTAGFVK >gi|227862340|gb|ACKR01000109.1| GENE 7 5962 - 6687 340 241 aa, chain + ## HITS:1 COG:SP0460 KEGG:ns NR:ns ## COG: SP0460 COG3464 # Protein_GI_number: 15900376 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pneumoniae TIGR4 # 5 218 169 382 422 114 32.0 1e-25 MSYRQLHFICLDGDNHQVVQILRTRYKKTLLKYFGRFSLQARANVKTVTMDLNFYYQDIV RACFPNAQIVIDRFHMIQMLTRSFNSLRVQVMKTFDKRSRQYQLLKSPWKLYLKKFDELE KVHPHYNWHYKDCLTQAQVVTEGINTSTTLENSYNLMQSFIQAVETGNTHELNLLINCQD QIGTLMHKTLLTFKHNLKAVLNGAKLPYSNGCLEGFNRKLNLSIRKKVDKNIVMFLSTFI L >gi|227862340|gb|ACKR01000109.1| GENE 8 6806 - 7378 603 190 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00029 NR:ns ## KEGG: LCRIS_00029 # Name: not_defined # Def: mucus-binding protein # Organism: L.crispatus # Pathway: not_defined # 2 190 1061 1232 1232 122 69.0 5e-27 AVNENTQDTTVEISYTANETPEQPDNSKDKGNNDNNGGNNSDAIVPINPSDNNSNNSNNA PTDNKKTDDTKKDNTGKKITKETPKKVKNNKSNKTKSTTTSKSNQSSKAKRTTKSGTISP KAVALANTTAGLATSAKANMENGIAKNNSQNSQTLPQTGENESKVAFAVAGLLAAALGIF GIAINHKKEN Prediction of potential genes in microbial genomes Time: Wed May 25 06:30:10 2011 Seq name: gi|227862324|gb|ACKR01000110.1| Lactobacillus crispatus JV-V01 contig00117, whole genome shotgun sequence Length of sequence - 9702 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 7, operones - 4 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 1689 1535 ## FI9785_1482 putative mucus binding protein 2 1 Op 2 . - CDS 1715 - 2617 767 ## FI9785_1482 putative mucus binding protein - Prom 2668 - 2727 9.9 - Term 3236 - 3273 3.1 3 2 Tu 1 . - CDS 3301 - 3510 58 ## LCRIS_00026 putative protein without homology, LPXTG-motif cell wall anchor - Prom 3625 - 3684 6.4 - Term 3656 - 3708 12.4 4 3 Op 1 . - CDS 3735 - 4508 627 ## COG4905 Predicted membrane protein - Prom 4540 - 4599 3.0 5 3 Op 2 . - CDS 4607 - 5674 1011 ## LCRIS_00024 putative protein without homology, LPXTG-motif cell wall anchor - Prom 5718 - 5777 6.2 - Term 5745 - 5807 19.1 6 4 Op 1 . - CDS 5835 - 6239 418 ## LCRIS_00023 putative protein without homology 7 4 Op 2 . - CDS 6269 - 6967 824 ## COG0531 Amino acid transporters - Prom 6990 - 7049 3.6 8 5 Op 1 . - CDS 7053 - 7577 357 ## LGAS_0021 hypothetical protein 9 5 Op 2 . - CDS 7574 - 7774 161 ## COG1476 Predicted transcriptional regulators - Prom 7822 - 7881 8.5 10 6 Tu 1 . - CDS 8218 - 9078 310 ## LBA0087 putative protease - Prom 9274 - 9333 4.3 11 7 Tu 1 . - CDS 9478 - 9657 68 ## gi|256843791|ref|ZP_05549278.1| transcriptional regulator Predicted protein(s) >gi|227862324|gb|ACKR01000110.1| GENE 1 3 - 1689 1535 562 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1482 NR:ns ## KEGG: FI9785_1482 # Name: not_defined # Def: putative mucus binding protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 2 562 289 855 1356 681 67.0 0 MSKINALKIGNNLKAGTNFVLTVPLKYIGRTDGTKQFNNVQVVDYGQPNANMVFDFIELH PEQIDTPEAPTTDKESVTTGIYNNPLATATDWYKTEHGEYVAYYTAKGKDGKTYVTGYVA ANGKSESIINVDQIDLNTLEYHMIYRNGDEEVAAGISASFADGKTLVVDASRIGADGIRL KSQQGWSYNNGGYRENTSGRLYYSWEDFLKNHNGSVDNLVGINMNASAFKPGDTIEVVVP VRYIGKLSDQVQSLEFKSEARKDVSVKLYFTTVRKDLSQVKQVVLLPTEFMGEQPGQSNW KLVKEIEKDMPNGWEAIKISNFPTYKGSFNMDSLPKGDLPSVVYGSAQYFVDLQEIQKIF ANHGYTVKYANNNGKAQEMPFYGYVTLPLALIDGGGKPVAPSIWTIQVQAVPAIILNKDQ HYVADPNAKPWDTTSMIDEIYAADDAGQRKTRDQLEKLPKTDVDISYEYQAPGAATAAPV DKVDLTKAGVYTVTYSHTYADGRVVKDSRKVYVDDVKQETKDITRTIIVHEPNGTDQTVI QKATLTRKVILDATTGEIKSVG >gi|227862324|gb|ACKR01000110.1| GENE 2 1715 - 2617 767 300 aa, chain - ## HITS:1 COG:no KEGG:FI9785_1482 NR:ns ## KEGG: FI9785_1482 # Name: not_defined # Def: putative mucus binding protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 26 295 1 273 1356 158 44.0 3e-37 MLERVPKYTLRKLSVGLASVMIGSGILMNSPKVLADTINPNEGTSTAVQPSSQDKDNSEP STQSGATQDENIDSNAAVQERSDNSVTEPATTTNAEEKVVATNTQDTTQDKDKQTNANET TQNTTNVDKKDTEVTPTNDATTATPKTTAKVNAPAAPTAMKAAATAETPDPTVPDNSANT AIINDKNSLEKIWLETSTARAQVYTTVKGTDQKVYVSSYAEFGKRLNSLIFTNRFDPNSL ELHIEYQVLKDRVQNFIVNWGDWLRLDTSRIGKDGLTFTTDTGEKVAYTLTPGWGEVQNL >gi|227862324|gb|ACKR01000110.1| GENE 3 3301 - 3510 58 69 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00026 NR:ns ## KEGG: LCRIS_00026 # Name: not_defined # Def: putative protein without homology, LPXTG-motif cell wall anchor # Organism: L.crispatus # Pathway: not_defined # 2 69 37 104 104 115 97.0 7e-25 MTNIIATPSTPETTEEEHLTVKDHVGSSTLRRGLPQTGEKKSTLNAGFALAGIGLALLAG MLFDPKKKH >gi|227862324|gb|ACKR01000110.1| GENE 4 3735 - 4508 627 257 aa, chain - ## HITS:1 COG:L191765 KEGG:ns NR:ns ## COG: L191765 COG4905 # Protein_GI_number: 15673533 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 7 165 2 159 235 167 50.0 1e-41 MPYTISEIIVLFFTYSVIGWLWETFYCSIKDHHYDYRGFLFGPYCPVYGFAVTTILICTK DVRDNLLLLFIVGTIVATIFEFVASWLLETIFHMKLWNYSKLWGNIQGRVAPMISLFWGV GVVLLVKFIQPIIQKLINNEEKITHGWLAVGITIVMGIDLVLTVISVERFHTTTKMWDVH INHFIERVRTKVESHMPEKGKLRVGDWHHSVMQHYDELQPQRLSWNHKRYLKSFPKLKVT DAPKFMEIKKEVLKKES >gi|227862324|gb|ACKR01000110.1| GENE 5 4607 - 5674 1011 355 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00024 NR:ns ## KEGG: LCRIS_00024 # Name: not_defined # Def: putative protein without homology, LPXTG-motif cell wall anchor # Organism: L.crispatus # Pathway: not_defined # 1 355 1 355 355 577 98.0 1e-163 MKKLLIGSAVLAALLIKENIAVNAAIEQNETTPKIAVTDKKEKPKDQSDNSFAGHYDQET NFITWEIRLNPKKEKYTGDLKLENLIPEGLVLDPDTIEVIKNDNFIQNSSLVKLKKNKLT AEFPAKKYSESTILIKYRTKVEAEPNEPNYLRVSQSFTLGDDRVQEYEQEIKYDRSNKNF NIEAPHKSTFRDDNQISLIKKSKSNEERSEDWLKRLAELIINKKETTSDKGGEKVQGQVK DQKQQASPENTNLSRTPTVKGLTGFDTKANEVKSTAKIDSDSVKTTLDKDEIKDNASTIS PKSQKHDTHVTLPKSDTSETKAKLPKAGETAGVMLSVLGIILIIAGWTVRTKFLK >gi|227862324|gb|ACKR01000110.1| GENE 6 5835 - 6239 418 134 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00023 NR:ns ## KEGG: LCRIS_00023 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 62 134 1 73 73 102 97.0 5e-21 MTLGVQGAVANQGHVLATAGKLVLGNWGLFITSLIVCIFVVIFPLSAVGEMASLAFLLVY AMVNLGHLRIAGQTGAKRWILICSVVLNLALFALLFIQTILNHETLTWISVIALLIISFL VELAWRKKNKRNLH >gi|227862324|gb|ACKR01000110.1| GENE 7 6269 - 6967 824 232 aa, chain - ## HITS:1 COG:MA2286 KEGG:ns NR:ns ## COG: MA2286 COG0531 # Protein_GI_number: 20091124 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Methanosarcina acetivorans str.C2A # 6 230 3 227 430 156 38.0 4e-38 MKKQNKTGSIGVVGATAIGVGGMMGAGLYTLLGLAANSAGVWLPVSFLIGGIVAAFSVYS YSKLGMKYPDRGGAAKFLLKEFGDGLLAGGMNVFQYIGWIIAMALYATGFAEYACQLLGK SSSGWLGKAISIGIVIVVVAINIMGSKQVARAQTAIIAFELLILLSFVAVGLTKLHVPTI TSSNSGNIVGILSAAGLLYVTYEGFGVVTNAAGSMVNPKKQLPQALFFSLGR >gi|227862324|gb|ACKR01000110.1| GENE 8 7053 - 7577 357 174 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0021 NR:ns ## KEGG: LGAS_0021 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 3 174 4 172 172 63 25.0 3e-09 MRRESLWLKFVRYWYGIDSKLDERQLAEVERIGNNAYVISGIVELILLVITLIMALTIKS ELALWFLPLAIAIMMLMMSAYTYLTMRKFKIFSVEITADERPKAIRRIWIKAIIAGIIGA VFGTLGSALGASSVQNNLVNVLDFWPQGLWLGVCCGAGSAIGRVQRLKVIKEDE >gi|227862324|gb|ACKR01000110.1| GENE 9 7574 - 7774 161 66 aa, chain - ## HITS:1 COG:SP0333 KEGG:ns NR:ns ## COG: SP0333 COG1476 # Protein_GI_number: 15900264 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 63 1 63 64 92 73.0 2e-19 MNRVREYRKQKQISQMELARRIGVARQTINLIENDKYNPSLELCLNLAHALGTDLNTLFW DGDEAK >gi|227862324|gb|ACKR01000110.1| GENE 10 8218 - 9078 310 286 aa, chain - ## HITS:1 COG:no KEGG:LBA0087 NR:ns ## KEGG: LBA0087 # Name: not_defined # Def: putative protease # Organism: L.acidophilus # Pathway: not_defined # 32 268 124 362 485 87 34.0 6e-16 MKKSKIIFLIELVLNIIAAVFLVINNSFKNLLDVGVVFLLLLLLIWNFLRRKIEISLKLS WLNLMILPAIFTYCLNTVANVLLVKYPVKSVLIAIIYSLLFLVYLLPVVITNVGLVKNKY ARVFIAMYYIVLLLFSENLHMNDYLSSFVNWSHSEILNGLALIPIIFCLFKSWDIRAKLN LKFRRYSNIQLIVLLVAVFFAAWYSFFHSYVYIAPTFSQLFWNWDFSEIIPTERAVLWSL GAILFEEGFRYLLIIVLLEVFKVQRGQIDYFLECAIFWIDTLCRTT >gi|227862324|gb|ACKR01000110.1| GENE 11 9478 - 9657 68 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843791|ref|ZP_05549278.1| ## NR: gi|256843791|ref|ZP_05549278.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] # 1 59 212 270 270 107 98.0 2e-22 MLKIISWIKTTSIVPELGIIRELNAYFLAVYEGNISVSTNIKNVLKISGYQNLANDLPN Prediction of potential genes in microbial genomes Time: Wed May 25 06:30:42 2011 Seq name: gi|227862318|gb|ACKR01000111.1| Lactobacillus crispatus JV-V01 contig00118, whole genome shotgun sequence Length of sequence - 2546 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 4, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 590 374 ## LCRIS_00047 transcriptional regulator - Prom 652 - 711 5.3 + Prom 581 - 640 8.1 2 2 Tu 1 . + CDS 681 - 1517 581 ## LCRIS_01911 transcriptional regulator, XRE family + Prom 1811 - 1870 3.9 3 3 Tu 1 . + CDS 1893 - 2090 70 ## gi|227878083|ref|ZP_03996070.1| hypothetical protein HMPREF0506_1071 + Term 2112 - 2141 0.5 4 4 Tu 1 . - CDS 2153 - 2392 301 ## gi|227878084|ref|ZP_03996071.1| hypothetical protein HMPREF0506_1072 - Prom 2469 - 2528 5.4 Predicted protein(s) >gi|227862318|gb|ACKR01000111.1| GENE 1 2 - 590 374 196 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00047 NR:ns ## KEGG: LCRIS_00047 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 196 1 199 272 154 44.0 2e-36 MDIGTALRHLRDDLGLTQKQMIQGTKITVSHYSKLEKGQNRIFIENLVEILKQRNISLSY FVDHYLNDENSEKEVNYSEILNIAFYEKDKIAAEEIKRQIFSDKSSSNELRDRATLIVDM IDNQGQSNVDARIINSIFKHDNWTQYDEAIILLGNIIRTSNVLNMSPLVLTLIRKYKDLD KEKIEKQRRLATVGIN >gi|227862318|gb|ACKR01000111.1| GENE 2 681 - 1517 581 278 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01911 NR:ns ## KEGG: LCRIS_01911 # Name: not_defined # Def: transcriptional regulator, XRE family # Organism: L.crispatus # Pathway: not_defined # 1 276 1 275 277 241 43.0 3e-62 MTIGQALRKIRQNLDLTQKEMAANIVTRPFYAKVEAGKSRISADKLAAILFEHDVDITYF YQLLRATYTSKQKKIESDLNNKMEQAFNVGKIDEIESCYQEILSQSHSKILKLRAMISVA YLKNKLNQIDPKIKKDLFIEFNEGQNWMTNPELLRLFTNTMPLWEQDTLAFFINRLLNEM KSNKNISELEQERYLRVFENYLAVCYNRKLSKKSLQLMHVPKIIDYIMESKPTIHFLLYK IAALYLKNLFLNNKEEAQKIRNEVQKYGYQDLIKTWPK >gi|227862318|gb|ACKR01000111.1| GENE 3 1893 - 2090 70 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878083|ref|ZP_03996070.1| ## NR: gi|227878083|ref|ZP_03996070.1| hypothetical protein HMPREF0506_1071 [Lactobacillus crispatus JV-V01] # 1 65 5 69 69 88 100.0 1e-16 MILATLKNRKRNRLFLTFEGIYAIILLFSVLFYFPLFILELKIQFILISTFYLISWGVAK FHKRS >gi|227862318|gb|ACKR01000111.1| GENE 4 2153 - 2392 301 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878084|ref|ZP_03996071.1| ## NR: gi|227878084|ref|ZP_03996071.1| hypothetical protein HMPREF0506_1072 [Lactobacillus crispatus JV-V01] # 1 79 1 79 79 102 100.0 1e-20 MTKEYEKEVKEAESVLEDQKLTDSEISQELISKDNPTENVKPSEIDFLRKKPNLTTQIDF TLLADLAGLSKEAKAEAAV Prediction of potential genes in microbial genomes Time: Wed May 25 06:30:58 2011 Seq name: gi|227862316|gb|ACKR01000112.1| Lactobacillus crispatus JV-V01 contig00120, whole genome shotgun sequence Length of sequence - 937 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 815 477 ## lhv_0676 transposase Predicted protein(s) >gi|227862316|gb|ACKR01000112.1| GENE 1 3 - 815 477 270 aa, chain + ## HITS:1 COG:no KEGG:lhv_0676 NR:ns ## KEGG: lhv_0676 # Name: not_defined # Def: transposase # Organism: L.helveticus # Pathway: not_defined # 78 270 1 193 194 210 53.0 5e-53 NCGPYIVTMDRGYTGFNMIENCNRLPNCYYVIRTKTGYGAFKEVAELPNQECDKDIACWV TTSNYYYETHKATENVHLVNHHYRQYIKYRSKNTKDGSWDFGELCTIKFRACKFRINDPK SGKEEWEVVLTNLNRADYPLKRIKEIYHLRWGIETSFKKLKYALGSVQFHSKQDRFIEME IYAHMIMFNAVSQIDAQAYVPQKKCKYQYAINFKQSCFVIQAMYIISSSTEIFKKILIQI SHYTIPIRPGRKDKRNLKPKSAVYYLYRVA Prediction of potential genes in microbial genomes Time: Wed May 25 06:31:02 2011 Seq name: gi|227862314|gb|ACKR01000113.1| Lactobacillus crispatus JV-V01 contig00122, whole genome shotgun sequence Length of sequence - 323 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 293 70 ## FI9785_169 putative transposase Predicted protein(s) >gi|227862314|gb|ACKR01000113.1| GENE 1 2 - 293 70 97 aa, chain - ## HITS:1 COG:no KEGG:FI9785_169 NR:ns ## KEGG: FI9785_169 # Name: not_defined # Def: putative transposase # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 97 1 97 285 198 100.0 6e-50 MNYLKLKRFSHHLQVSFNRLNVICRSLYKLYAPDGLKHRKNVDQTKLPDSSILAMLIWQT EIGIESQRRFCKFFVGLSHSRFNRRARMLLPLIRCIR Prediction of potential genes in microbial genomes Time: Wed May 25 06:31:05 2011 Seq name: gi|227862312|gb|ACKR01000114.1| Lactobacillus crispatus JV-V01 contig00123, whole genome shotgun sequence Length of sequence - 1228 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 1202 676 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|227862312|gb|ACKR01000114.1| GENE 1 3 - 1202 676 399 aa, chain + ## HITS:1 COG:yi5B KEGG:ns NR:ns ## COG: yi5B COG2801 # Protein_GI_number: 16131429 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 105 392 2 277 283 241 46.0 2e-63 KEFKQRTIEQAIFGNKPYLQLSLELGFKSIGMLNNWIREYKKNGYNVIIKQKGRPARDQR KAEISQGTGERDPAAERRKLAIAYCERIRKKTKCLGPRRSEEIARVITDLRQEFKVSLNY VLAAIAEHPELPIIARSSYYKIIKRQPVKPKRSKLIARIHEIFNHHQGRYGYRRVALQLI REGWKVTEKTVRYWMHKLGLKGIRRNKRKYSSYKGTIGKIAPNLIHRDFFAALPNTKWYT DITEFHLNNEKLYLSPILDGCGGDIVSYTISKHPDMDLVMTMLDKAFAKETALNNCIFHT DQGCQYQSPRYQRALKLHGITQSMSRKGNSMDDGLMENFFGLLKTEMFYDQEYKYHNLQE LTQAIEEYIEYYNNERIKSRLKGLTPKEYRSQASINPIF Prediction of potential genes in microbial genomes Time: Wed May 25 06:31:06 2011 Seq name: gi|227862307|gb|ACKR01000115.1| Lactobacillus crispatus JV-V01 contig00124, whole genome shotgun sequence Length of sequence - 2483 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 16 - 75 1.9 1 1 Op 1 . + CDS 97 - 732 736 ## lhv_1637 putative aggregation promoting protein 2 1 Op 2 . + CDS 756 - 1412 498 ## LCRIS_01612 hypothetical protein + Prom 1421 - 1480 2.8 3 2 Op 1 . + CDS 1537 - 2223 501 ## gi|256843702|ref|ZP_05549190.1| predicted protein 4 2 Op 2 . + CDS 2220 - 2414 112 ## gi|227878096|ref|ZP_03996079.1| hypothetical protein HMPREF0506_1080 Predicted protein(s) >gi|227862307|gb|ACKR01000115.1| GENE 1 97 - 732 736 211 aa, chain + ## HITS:1 COG:no KEGG:lhv_1637 NR:ns ## KEGG: lhv_1637 # Name: not_defined # Def: putative aggregation promoting protein # Organism: L.helveticus # Pathway: not_defined # 1 211 6 215 215 275 73.0 8e-73 MKIFNKKNLLLSSAVVAGMLFTVGTKAVQADTTDSSQQATTNTLKVNANTAVPDKNLITP VASRDNQTLRQVAEANNTSLSVLEKLNDNIDPDKTIANGTPLYLPQNEDLSGLFGIYLRS DTSVPSSLKRKYYDSLSAKERAAKMWIIARESGGNYNARNGIYIGRFQLTNTYLNGNYSK ANQEKTALRYVKGRYGSWSAAKRFWQAHNWY >gi|227862307|gb|ACKR01000115.1| GENE 2 756 - 1412 498 218 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01612 NR:ns ## KEGG: LCRIS_01612 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 218 1 213 213 161 48.0 2e-38 MKFQKLVTSVLLVASTTGVLMTAPKRVQAVADTNTTESGKPVANIVNKPNLTKQGYVLTI QAPSGKIYVGQKNYKKQLTTTKPISNAKSVSWKKIKNVRFRIEKVAYATKVIKFGGAPQY LLVSKDKKYSCWTTRYSIKYYFWNTKKMQQVIKPLSKLTTRNSSSLKKIRNKQDFNQAVL AAKRLPANQRKVVLESLNQVKKVGNIDKAEDNILLFSF >gi|227862307|gb|ACKR01000115.1| GENE 3 1537 - 2223 501 228 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256843702|ref|ZP_05549190.1| ## NR: gi|256843702|ref|ZP_05549190.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 228 16 243 243 423 100.0 1e-117 MLLAAGEGIVPNTVNASMLDSAKSSQNSQESSRYTWQSVKLTDGTEMQILPDNSSKLAGK IKYNGQIYSYRIVSNNGVYTIYLNNEEVYSVDINNSQLPTTSVGGFDPFINFTYANGKVA FKHAGRKYYYLTTEKYSADTVRRLKGTTKDIIIGLLGFVPVVGPYVSAGGFAYTVYNDIF GKNPKNKWYTIKEYCTRGYEYYAWKTYTYTDSHRKHLQSVKWEYKKVL >gi|227862307|gb|ACKR01000115.1| GENE 4 2220 - 2414 112 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878096|ref|ZP_03996079.1| ## NR: gi|227878096|ref|ZP_03996079.1| hypothetical protein HMPREF0506_1080 [Lactobacillus crispatus JV-V01] # 1 64 1 64 64 98 100.0 1e-19 MRGILTSRVARGILAFIFIFFTGWSAARLIVQIERSESIYDYLILGGFSLVLGILELYRL INSK Prediction of potential genes in microbial genomes Time: Wed May 25 06:31:28 2011 Seq name: gi|227862301|gb|ACKR01000116.1| Lactobacillus crispatus JV-V01 contig00125, whole genome shotgun sequence Length of sequence - 3644 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 5 - 64 5.8 1 1 Tu 1 . + CDS 134 - 349 236 ## LCRIS_01612 hypothetical protein + Term 368 - 407 4.5 + Prom 378 - 437 6.7 2 2 Op 1 1/0.000 + CDS 533 - 1036 535 ## COG0477 Permeases of the major facilitator superfamily + Term 1058 - 1087 2.1 + Prom 1070 - 1129 9.9 3 2 Op 2 1/0.000 + CDS 1157 - 2488 1397 ## COG0675 Transposase and inactivated derivatives + Term 2643 - 2685 4.5 + Prom 2703 - 2762 1.7 4 2 Op 3 . + CDS 2788 - 3381 443 ## COG0477 Permeases of the major facilitator superfamily + Term 3527 - 3562 -1.0 Predicted protein(s) >gi|227862301|gb|ACKR01000116.1| GENE 1 134 - 349 236 71 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01612 NR:ns ## KEGG: LCRIS_01612 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 71 143 213 213 116 98.0 2e-25 MQGVIKPLKRIANRLNTSLKKANNKRDFNAAMKAAKKLRGSQRDFVLRSLNQLKKDGSMN VEGKNLLLFGL >gi|227862301|gb|ACKR01000116.1| GENE 2 533 - 1036 535 167 aa, chain + ## HITS:1 COG:L184818 KEGG:ns NR:ns ## COG: L184818 COG0477 # Protein_GI_number: 15673330 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 158 18 175 454 150 51.0 9e-37 MLSFLGILDETATTVTFPTLIKEFSITTDQVQWVNTLVLLVIATIVPISSQIRLRISTKK IFILGVLLFTLGLIIDILSPRFDLLLLGRAMQGVGTGIGLPLMYNIILAEVPKEKLGFMM GIGTMITACAVALGPVFGGMITDALNWRWIFIISLFLMKNARKFPVF >gi|227862301|gb|ACKR01000116.1| GENE 3 1157 - 2488 1397 443 aa, chain + ## HITS:1 COG:all7245 KEGG:ns NR:ns ## COG: all7245 COG0675 # Protein_GI_number: 17233261 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Nostoc sp. PCC 7120 # 12 431 4 368 407 166 30.0 7e-41 MKRMSSLAYHFGLKVRFYPSSKQKKIIKLNYDAQRFVYNSYVGRNRNNYRAKGYLAVRQY QVMPFAFSVLNNYETKLAEEVVANNELLAKPKNIRDAYSFLRVKEIDSLAIANAIQNYQK AWNNYRKLGHGIPTFHKKRSDWSYQTNCQYPKQTEAFLDNGTARFIDAKHVKLPKLGVVR IASFRKLIKERFLNHIPTRIGTVTIKKTADDQFYLSMQLGSDIAFVKELPKTQSQIGIDL NLDNFLTASNGAMVANPRFYRKTKKKLAHAQRVLSRRQRRAKKEGRNLRLAKNYQKQRLA VAKLHDKIRRQRNDFLQVLSTALIKNHDLVVAEELRSKNLLKNHALSQAISDVGWRSFLN MLAYKADLYGKEFKTIDPKYTTQRCHQCGSIMGQNGYKKLTLKDREWTCPICQTHHIRDW NAAVNILEKGLGNWQNSKIKKAA >gi|227862301|gb|ACKR01000116.1| GENE 4 2788 - 3381 443 197 aa, chain + ## HITS:1 COG:lin1658 KEGG:ns NR:ns ## COG: lin1658 COG0477 # Protein_GI_number: 16800726 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 1 196 214 410 489 84 28.0 2e-16 MLGFTRIAKYSFFSIRVWGFLILGIISLLIWLKISWSDKAALISPQLFKNLRFSMQLIAY CFAKIATLALGFIFPIYVQAVNHGSVSLAGWVTFPGAVITALMAALAGKLLDKKGARLPI IIGIIASLTSLILMNVLAPLSNLAIVLLYVLYYGGYGMCFGSLMTSGLITLGKASHAQGN AIFNTLQQFSGALGTAL Prediction of potential genes in microbial genomes Time: Wed May 25 06:31:30 2011 Seq name: gi|227862299|gb|ACKR01000117.1| Lactobacillus crispatus JV-V01 contig00126, whole genome shotgun sequence Length of sequence - 1075 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 16 - 1075 796 ## COG1373 Predicted ATPase (AAA+ superfamily) Predicted protein(s) >gi|227862299|gb|ACKR01000117.1| GENE 1 16 - 1075 796 353 aa, chain + ## HITS:1 COG:MJ1544 KEGG:ns NR:ns ## COG: MJ1544 COG1373 # Protein_GI_number: 15669739 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Methanococcus jannaschii # 5 349 21 364 441 147 31.0 4e-35 MNPDLLAALILEGQKNIKSIAIIPRDYHFEDSLNYVLVGLRRAGKSTLLFKRAQDLVDKQ NVDWSQIVYLNFEDERLDGFQLADCNNILIAANQLTTKKHYFLFDEIQNIAGWEKFARRL ADQGESVYLTGSNSKVLGHDIVLRLGGRYMTKYVAPFSFTEYLTAKKIPHDKLSVLDTVN NGQIRAAANEYLCYGGLPESIILTDKRNYLTSIYQNVFLADIIVRNKIRNEKTISLLLRK IADTVMHKVSYATLYKNIKNVISTVSRNSIIDYIDYAKDAYLLFSTKNYFAKFSERESSP KYYFTDNGILNLFYLDKLPALLENLVAIKLHNKYQENLFYLKSQKTGIDIDFY Prediction of potential genes in microbial genomes Time: Wed May 25 06:31:37 2011 Seq name: gi|227862275|gb|ACKR01000118.1| Lactobacillus crispatus JV-V01 contig00127, whole genome shotgun sequence Length of sequence - 24659 bp Number of predicted genes - 23, with homology - 23 Number of transcription units - 14, operones - 5 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 212 91 ## gi|262047727|ref|ZP_06020680.1| ATPase + Term 234 - 274 4.1 + Prom 271 - 330 7.7 2 2 Tu 1 . + CDS 367 - 1476 605 ## LJ0704 hypothetical protein + Term 1481 - 1523 6.4 - Term 1473 - 1507 2.1 3 3 Tu 1 . - CDS 1511 - 2620 665 ## LCRIS_01574 integral membrane protein - Prom 2690 - 2749 7.4 + Prom 2643 - 2702 9.2 4 4 Tu 1 . + CDS 2726 - 3544 658 ## COG1767 Triphosphoribosyl-dephospho-CoA synthetase + Term 3545 - 3595 9.4 - Term 3724 - 3764 8.6 5 5 Tu 1 . - CDS 3790 - 4542 841 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) - Prom 4688 - 4747 8.0 + Prom 4873 - 4932 14.0 6 6 Op 1 . + CDS 4974 - 5411 385 ## COG0406 Fructose-2,6-bisphosphatase + Prom 5440 - 5499 3.3 7 6 Op 2 . + CDS 5596 - 7977 1902 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase + Term 7989 - 8030 8.1 - Term 7978 - 8016 2.1 8 7 Tu 1 . - CDS 8023 - 8880 1217 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit - Prom 9085 - 9144 7.0 + Prom 8885 - 8944 4.0 9 8 Op 1 . + CDS 8968 - 11025 1961 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 10 8 Op 2 . + CDS 11042 - 11392 603 ## LCRIS_01557 UPF0342 protein 11 8 Op 3 5/0.167 + CDS 11401 - 12618 1275 ## COG0420 DNA repair exonuclease 12 8 Op 4 3/0.167 + CDS 12599 - 15094 1957 ## COG4717 Uncharacterized conserved protein 13 8 Op 5 . + CDS 15087 - 16064 725 ## COG3481 Predicted HD-superfamily hydrolase + Term 16069 - 16115 7.4 + Prom 16087 - 16146 6.5 14 9 Op 1 . + CDS 16181 - 16666 318 ## gi|227878119|ref|ZP_03996099.1| hypothetical protein HMPREF0506_1100 15 9 Op 2 . + CDS 16691 - 17470 589 ## LCABL_13490 hypothetical protein + Term 17549 - 17603 10.8 + Prom 17705 - 17764 8.4 16 10 Tu 1 . + CDS 17831 - 19312 1547 ## LCRIS_01553 putative protein without homology + Term 19322 - 19368 9.5 17 11 Tu 1 . + CDS 19445 - 19882 430 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase + Term 19943 - 19978 3.4 - Term 19933 - 19963 0.0 18 12 Tu 1 . - CDS 19991 - 20887 1238 ## COG0760 Parvulin-like peptidyl-prolyl isomerase - Prom 20923 - 20982 6.2 19 13 Op 1 . - CDS 21006 - 21362 443 ## LCRIS_01549 tropomyosin 20 13 Op 2 . - CDS 21372 - 21803 595 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - Prom 21848 - 21907 4.7 + Prom 21669 - 21728 4.2 21 14 Op 1 7/0.000 + CDS 21894 - 22637 248 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 22 14 Op 2 . + CDS 22630 - 23841 1012 ## COG4473 Predicted ABC-type exoprotein transport system, permease component 23 14 Op 3 . + CDS 23851 - 24507 807 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase + Term 24511 - 24562 8.6 Predicted protein(s) >gi|227862275|gb|ACKR01000118.1| GENE 1 3 - 212 91 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|262047727|ref|ZP_06020680.1| ## NR: gi|262047727|ref|ZP_06020680.1| ATPase [Lactobacillus crispatus MV-3A-US] # 1 69 354 422 422 136 100.0 5e-31 VPASKTAIQVAWEVNDTSKEREVGNLIKLADNFDEVENLIIVTHGEEAEIQQKDKIIQLM PLYKFLLMR >gi|227862275|gb|ACKR01000118.1| GENE 2 367 - 1476 605 369 aa, chain + ## HITS:1 COG:no KEGG:LJ0704 NR:ns ## KEGG: LJ0704 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 6 365 2 361 361 313 44.0 8e-84 MSEITNPFDPNFGKVPKIYLGRQKIVEDIVRSLESGTGPYQTSMIYGMRGVGKTSLLADI TSTLEQKDNWIVIYLAMTNDLLATLIQSIYQEAANPVKKALNKIDGVKFSAFGFELEVHI SNPQSTYQVLLEEMLKVLKKHHQSLLIAIDEVKETPEIVNLASIYQIMVLKKYSINMMMT GLPKNVSELQNNDVLTFLLRSGRVPLGPLDLFDIKYRYQKAFERGNKEINNTALMKMTKL TRGYAYAFQDLGYHVWQHSTDQVTDESIENSISSFKNDLFRNAYIKIISELSPVDRKFLF IMAHNDKNVVNISDIRKQMGKSSNYISQYRQRLMDSQVIIDAGYGKVAFSLPFMKDFLLE AEELYEIDN >gi|227862275|gb|ACKR01000118.1| GENE 3 1511 - 2620 665 369 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01574 NR:ns ## KEGG: LCRIS_01574 # Name: not_defined # Def: integral membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 369 1 369 369 571 85.0 1e-161 MKTDQFKSYQIADIGDYLKVFACSAVISQPIMSLVMDVEQPVHTQDVFGVFYNLVKYTAP AFIFGILYTTIRTNNEKNSFSYAKHMQTNWSNLFVPTIWWTLIYLLGMPWLQQVNHFNNI GSFYWQFINGNAAPHLWYNTMMLQFIILMPIFWGLSRYVGHNLTRGIWIAVITFVLYFAW LWFYDYNVFHGMHEHDWYLLDRIFISFFIYGVYGVLAWQLRGYYNQLVTKFWWVITILFI ACFIWTNVELHKFGYPINFNNAPYYKPSMTLYCLAVIALISAFCLHQVRKNSQTSLKVFH FLATYAYRAYLSNVFWNQLVWRGLNMQYHAIYHPFLTFFGIWLLTWILSFTSAYCLHIWW TKAKSLIIK >gi|227862275|gb|ACKR01000118.1| GENE 4 2726 - 3544 658 272 aa, chain + ## HITS:1 COG:SPy1178 KEGG:ns NR:ns ## COG: SPy1178 COG1767 # Protein_GI_number: 15675150 # Func_class: H Coenzyme transport and metabolism # Function: Triphosphoribosyl-dephospho-CoA synthetase # Organism: Streptococcus pyogenes M1 GAS # 6 267 9 289 294 149 35.0 7e-36 MSVEKITQNALKALLYEVVTNPKPGLVDPVDVGSHPDMNVYLFINSSLSLENYFRQAAKI GADFTGQDLRQMFEQLRQAGIEAEKAMFKTTHNINTHKGAIFSLGLFGCASSYCENNNQG EFEVIQQMTKGLVKHDLGKRNETAGEKQFLQYGKGGVRAEAEAGYPLVRDVALPFLAQTE GDLNVRLLDTLMKIVSAIEDSNLIKRAGNIEVVSWAHNQAKKYLALGGYGTQAGKQFMLE LNQIFKEKNYSLGGSADLLIITIFMALQRGII >gi|227862275|gb|ACKR01000118.1| GENE 5 3790 - 4542 841 250 aa, chain - ## HITS:1 COG:CAC0770 KEGG:ns NR:ns ## COG: CAC0770 COG0580 # Protein_GI_number: 15894057 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Clostridium acetobutylicum # 1 244 1 238 242 216 45.0 4e-56 MEHTWLMKYFAEFFGTIILVVLGNGSVANSVLRDTGGNSRDGQANGGWLLIAFGFGFGVM LPAMLFGSISGNHLNPAVTLAQACSGVFPWDQVMPYILVQMLGAIVGQLILVAVYWPYIG RTTSDDAVFASFATGDSANSKFNGFITEFFGTAILLFIAVGLYRGMFFKQSEDIANIGVG FLITALVMAVGGPTGPALNPARDLGPRIVYALCPLPHKGSAHWDYSWVPVVAPIAGGICG ALLYKIAFGL >gi|227862275|gb|ACKR01000118.1| GENE 6 4974 - 5411 385 145 aa, chain + ## HITS:1 COG:lin1208 KEGG:ns NR:ns ## COG: lin1208 COG0406 # Protein_GI_number: 16800277 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 2 145 3 144 199 112 44.0 2e-25 MRTIYLVRHGQTLFNVHHKIQGTCDSPLTELGRAQATAVRQYFLQKEISFDAAFCSKQER ASDTLEIITDNQLSYTRLRDLHEKSHGEYEGQDEFMLPWRRGFSRINAAMEPDQHVEERM ERAITKIIDSTHANDTILIVGHGTA >gi|227862275|gb|ACKR01000118.1| GENE 7 5596 - 7977 1902 793 aa, chain + ## HITS:1 COG:PAE2423 KEGG:ns NR:ns ## COG: PAE2423 COG0574 # Protein_GI_number: 18313335 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Pyrobaculum aerophilum # 6 773 3 778 811 709 47.0 0 MNRDNYILWFDQLHCDDVDLVGGKSSSLGELTSETNVPVPYGFATTAIAYRHFMNYSDLN PKIDKLLATLTDPEDSEQLHRICTKIRKLIIEAPMPNDLALEISCAYDSLAQKMHQNEPF VAVRSSATAEDLPDASFAGEQDTYLNIHGRENVLKKVQECYASLFTDRATYYRIKQNFPQ EKVALSAAIQMMAFSKAAGVMFTVNVATGDDTKVMIEASWGLGEYVVSGTVTPDNYVVDK NTMKIVHKMVTKKPIELIRLPSGGTIEQKVAPDQVNEPALTDAQIIELAGYAKEIEKHYG CYMDMEWSLDQNDKLWLVQARPETVWSQKKKQEKTDAPQEATTEHRVLLKGLPASPGFVS GKVHIIDDPKDINEFKQGEVLVTLMTSPDWVPAMKKAAAIITNNGGMTCHAAIVSREMQI PCLVGTTSRGQAATKTLKNGETVTVDAKNGVVYAGVVKDAVKKVDEKPAEPAAVEYFPPT ATRVMMNLGDPDLAEKYASLPADGIGLMREEFLWTTYIHQHPLYLIETGHPERVVNELAN GIGKVARAMAPRPVVLRFSDFKSGEYRNLKGGDKYEPHEPADLLGWRGASRYYDPKYINA FKLELEAVKKVRDEFGLKNLHVMIPFCRTVDEARKVTEIMRTQGLVRSADFKVYMMAEIP ANIILADQFNQFIDGYSIGSNDLTMLLLGCDRNNDVIADLFDERNLAVKRAIRHLIKVAH QDGKTVSICGQAPSEYPEFTEFLVRSGIDFVSVNPDMVKATKLNVAHYEQRILLDHATGL GKKDPNEYNWENL >gi|227862275|gb|ACKR01000118.1| GENE 8 8023 - 8880 1217 285 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 1 285 1 285 285 473 79 1e-133 MSFHFTLFYPENLAPASVNEVLRQLLIPRKWRHFLRIEQNILVNGNYRYFNQNILPGDKI EINLDHVESDQQAYAPSGKMPDVIYEDDNLLIINKKKGQKTHPNLNETNTALNDCTTYLG QSPYIVHRLDMLTGGLLLIAKNPAVVPILNRELTSKIFHRDYLAKVINADHLAERGTINA PIGHDPLDQRKRKIDPTGLRAVTHYQVLQKNDDNTAIVKLTLETGRTHQIRVHLASLGSP IVGDPLYNPDFASERLALDAYEISLVQPYSFTKLNVKLPKNKIEL >gi|227862275|gb|ACKR01000118.1| GENE 9 8968 - 11025 1961 685 aa, chain + ## HITS:1 COG:lin2331 KEGG:ns NR:ns ## COG: lin2331 COG0744 # Protein_GI_number: 16801394 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Listeria innocua # 15 685 27 700 714 588 47.0 1e-167 MNNDQPRRGGFKDAWHRFDSRFFIGRWIILILLTLMLLTCTYYTIKVKTSNIANLKASLS TTTTIYDYKGKKAGSLYSQKGSFVEYDQISPNIQNAVISTEDRTFWKNPGFSIKGMVRAA LSLVIHHGQVTGGGSTLTQQLAKNSLLTQQQTFSRKLEELFFAIEINHVYSKKDILTMYL NNAYFGNGVWGVQDASRRYFGKNASELNPSEAATLAGILRNPSFYNPVDHMSNALARRNL ILNLMVDNNKLTAAQAKMYQKQGLTLRNTFQNKNGYRYPYFFDAVVDEAISKYGLTEEQV MNKGLKIYTTLNQNYQGKLQDTFEQSWLFPQNGSDGTESQGASVAMDPSTGAVRAIIGGR GKHVFRGYNRATQMKRQPGSSIKPLAVYAPALQNGYHYDSQLSNKLQKFGKNGYEPHNVD NGYSNTIPMYEALEQSKNVPAVWLLDKIGVSKGVQSVENFEIKVPKSDRNLALALGGLSS GVSPIQMARAYSAFANKGNLPNNSFFITKITDASGNVLAENNNPSSHRVISENTAKEMTT MMLGVFTNGTGRSAQPNGFRVAGKTGSTEVPNSYGFGTKDQWIVGYTPDIVLATWVGFDR TNKQHYMQGISETGITRLYKAEMEGILPYTAQTEFTEKAPNQIVKNNGSNDDWTNGLGEK IQDGLGSAGQKINEWYNSFKGLFGQ >gi|227862275|gb|ACKR01000118.1| GENE 10 11042 - 11392 603 116 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01557 NR:ns ## KEGG: LCRIS_01557 # Name: not_defined # Def: UPF0342 protein # Organism: L.crispatus # Pathway: not_defined # 1 116 1 116 116 155 100.0 6e-37 MVNIYDAANKLAEDLTQTDQYKKLQEAIKAVEDDKDASALFKKMDELQNKIMQAQQAGQP LSAEDQQAYKDLNDQVQKNDKIVSLLTNEQGLYDLLGEVQKAYTKPINDLYEDLRN >gi|227862275|gb|ACKR01000118.1| GENE 11 11401 - 12618 1275 405 aa, chain + ## HITS:1 COG:lin2325 KEGG:ns NR:ns ## COG: lin2325 COG0420 # Protein_GI_number: 16801389 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Listeria innocua # 1 260 4 260 411 198 42.0 1e-50 MKFIHFADAHLDSPFRGLSFLPSEEFNHIYQAADQSLKRIIDLALAEKVDLVLIAGDTFD SSQPSPRAQLFFAAQVKRLTDAQIQVVMIFGNHDHMKQEDLLVSPSPYFKLLGNSETVEQ ATFTTDAGFNYDVIGFSYLNNHITEDKIPEFPAKGKNYTFGLMHAQEKSATASQNVYAPF TVDELQNLNYDYFALGHIHARNNLSSTPWIVYPGNIQGRHINEMGAKGCYLGEIDGNSGK TTIDFKETGPILWQGTKINLEGAISKADLQAKIIAKLESGQKTYFSLTIAGAQYLSAEER DLVQDPDFWQTISQSLPFASQLVDVRFVVNTSLKLNDNDQQAFQAAKEELFAPAEFKQIV SDWQKKDPEAAKLAADPDFIAAVKNLTEVKLMSKLKGIKDETETN >gi|227862275|gb|ACKR01000118.1| GENE 12 12599 - 15094 1957 831 aa, chain + ## HITS:1 COG:lin2324 KEGG:ns NR:ns ## COG: lin2324 COG4717 # Protein_GI_number: 16801388 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 811 1 894 908 143 23.0 1e-33 MRLKQIKIINFGQFSNKTFDLPSDQINVFFGANEAGKSTTVAFIKQILFGFHLRSNSSPF FEDYTPLAHVSPMGGNLVFTAADGEYELERLYAKGDKTKKGILTVKKDGQVVPESVFFDQ IQNIDGSFYADSFIFNQEMLGQVNSLSQEDLLERIYYLGAADSSKLLEMRDDFAKETGKL FKKTGKKPEVNRLLKEMTDQRDKLAQTKNEFNDYEQLHQDFVQKRAALNRQKQDLAVLQK QEQDLHDLQKEMGNYQTLLDLQKQVKDVDFNGQNYQKAQDIMAQGRNLQKTIQSVEAQLQ GLGENDQSDFTLEKKLIQQKPQLLQWQAEYRNCLQKADQLKQEKEQLLALTPELKNLLKL TPEQIEQMQADYQALPGAVNEPAYVTTNDKLWYVIGAVLAALGVVLLVALGTVGVIALIT GLIFLAAGYLKNSNQNKQNAAVLEKQKLVAQKRQAFQTKYGLNPDTLNLNSLLTNLNQYQ IKKNAAQTNNKQVTVLNQNVAQLASSVQNALKQPIDNDFSQVLNGLDELETQISEKQELL QRKSSLTASLKQDKQDLKELGLKLQALFAQANVENMAGYDQLYQDSLNQAKLKTQIAALK ESLGDDLQQLQMQTNSTELADKLTALTEQISTKNAEINELQSQVAQLQVQLDNLADSTAV FKAKQDLANTETNFVQSSKEYLANLFAARWISRSLDLASNERFPKMLKAAQEYLALLTGG RYVGINLDKKLTVVRSDGKKREVKYLSRGTAEQLYFALKLAFIEQIKDEINLPILIDDSF VNFDDQRVSYIDQLLQKISENNQVLIFTAQKNLVDQLGIEPLTFTKGTQDA >gi|227862275|gb|ACKR01000118.1| GENE 13 15087 - 16064 725 325 aa, chain + ## HITS:1 COG:lin2323 KEGG:ns NR:ns ## COG: lin2323 COG3481 # Protein_GI_number: 16801387 # Func_class: R General function prediction only # Function: Predicted HD-superfamily hydrolase # Organism: Listeria innocua # 1 312 1 310 313 263 41.0 3e-70 MLKRLLDYNDGEEMDIVVLIRNSQLRHNKKNKLFLAMQFSDGSGEIRGNYWDANNQDAAT FSTGTIVELNGKREEYQGRPQIRIYSLRVVGPQEGYELDQFIKSAPEPVNEMEAEINKFV MQIDNPTWTKIVKYLLQKWHDRFYDHPAGKSNHHAVRGGLAFHTLSMLKDAKGLADNYEQ VNRSLLYAGCILHDMGKVLELSGSAATQYTTEGNLVGHLVLIDEQIMLAAQDMKMNLESE DLLLLRHMVLSHHGRFEYGSPKLPALLEAELLHRIDDLDAAIYAVTNALQHTPKGEFTEP LLSQDGKRYYRPMHDSALDNAKHLE >gi|227862275|gb|ACKR01000118.1| GENE 14 16181 - 16666 318 161 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878119|ref|ZP_03996099.1| ## NR: gi|227878119|ref|ZP_03996099.1| hypothetical protein HMPREF0506_1100 [Lactobacillus crispatus JV-V01] # 1 161 1 161 161 308 100.0 8e-83 MDIAEITKMIEAVKQIIEKNDYIDLPLFQNSSQLRLKGNNYNFILDLNRKGHRRPKCTFL LREKRNKEQPLVRVDIIGRPHQNPVGDFKWSNKVIPCPHLHRADFPKYGTYVAVPLLEKN ENFQLSQNDLNNLCECLKKTLKFLNVDNINSYNFREQESLF >gi|227862275|gb|ACKR01000118.1| GENE 15 16691 - 17470 589 259 aa, chain + ## HITS:1 COG:no KEGG:LCABL_13490 NR:ns ## KEGG: LCABL_13490 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 258 3 259 259 170 35.0 5e-41 MFDVEKMKKIYFDWIDKKIQFVPSKNQDYMTITTPFLDMYNDYIELVIAQGNTSKYIISD DGYTINELGLLDINLNRKSKRRDYFQSILINFGVKNQNNELVIEFDDLAQFPDAQNRLTQ CMLQAFDLLQTSKNSVIKYFKEDVTNYFIDNNIPVGEDLSLLGKSGRNSKFDIVVGRTRK KPQQAIKVVNTPINSNIANPLFRIIDVRESQPKTEFSVIANNINSPVSSDFKSAFKNYNI PVYSWSEREQWLSKFKLAM >gi|227862275|gb|ACKR01000118.1| GENE 16 17831 - 19312 1547 493 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01553 NR:ns ## KEGG: LCRIS_01553 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 493 1 492 492 839 95.0 0 MKASKKLILVSAATIMLTVPVLANNHLSNPVVAASQDNTQTTKLTFYINHNAYVYNHQGK RTKSKIKKGKLLKVTILKPKAITNPNQSRYFFNNVLAGKYFSLPTVSIKKTDFVNIGKNK YIKPGNIGRISPGKYQYADLSTKEIKVITKKTAPVTNQIGMPIAAPIKKGTKLTVDQNYY HNVDGADDYLSSLEYYRIKGTDKWVNLPDIKKSTRIMPNNFALAASTEDNYVIAGNSTYL YNIDGEIVDKSYLLITDVNVGVDRALYIWNKQTKQADLYYHLTANKKLVWVPALDGTGKT GTTITSNGSYAHQTKDTANTFVKASDVTSQNPVALKVDNTPSEAQADATQATASDYGELQ ALVDRAGQIKKSTLYRLTEKAQQERYDLAVDNAQKLLTNKNTSIAAVKQASWQIKYDQSK LDGQKVWVKNMNKLTKAEKSWVVSLANCDIHGDLQKEYAGFYKGKIAVVTYNKKTFKSEL VRYLKLSDYATDK >gi|227862275|gb|ACKR01000118.1| GENE 17 19445 - 19882 430 145 aa, chain + ## HITS:1 COG:L0022 KEGG:ns NR:ns ## COG: L0022 COG0800 # Protein_GI_number: 15673608 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Lactococcus lactis # 1 129 82 210 213 134 51.0 5e-32 MAIVSGARFVVSPSFNENTAKECNLYAVPYMPGCFSPTEIQSALTYGADVVKIFPGSIAG KGIISEIHGPFPYVNVMPSGGVSLGNMHEWFASGAYVVGVGGGLVGPAKNDDYKAVLHNA QAFHNEFQSIIYANSAVTRKVPVKA >gi|227862275|gb|ACKR01000118.1| GENE 18 19991 - 20887 1238 298 aa, chain - ## HITS:1 COG:lin2322 KEGG:ns NR:ns ## COG: lin2322 COG0760 # Protein_GI_number: 16801386 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Listeria innocua # 6 293 3 281 291 140 37.0 3e-33 MKSYMKKIAAVVAVAGVALSTAACSNSGTKATVASYKGGKITQEQYYDEMKKSQAGKSTL ANMIINRALEQQYGKYVSQKKVDKQYNNYKKQYGSQFSAVLQQNGMTASSFKQNIKTNLL SEQALKHIKKVTKKQEQQAWKSYQPKVTVQHILVAKKSTAQSIIKQLKDGKSFKVLAKKY SLDTATKNKAGKLPSFDSTDTTLDSSFKTAAFKLKTGEVTSTPVKSQSGYHVIKMISHPA KGKFADHKKAIDDQIYASMAQDQATMKDVIATVLKKADVSIKDSDLKDVLSSYVSTTK >gi|227862275|gb|ACKR01000118.1| GENE 19 21006 - 21362 443 118 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01549 NR:ns ## KEGG: LCRIS_01549 # Name: not_defined # Def: tropomyosin # Organism: L.crispatus # Pathway: not_defined # 1 118 1 118 118 207 100.0 1e-52 MKHFLLGTVFGATAGLVFSCMKDSNGNRPGKPLKDEFEAIKHESQRFNSALQKAKKASQE LNEQMPTAERTISDINDSVEHYSDHIQPIVNRIEKKSDKLNQDLENIVPDTNSQDTKN >gi|227862275|gb|ACKR01000118.1| GENE 20 21372 - 21803 595 143 aa, chain - ## HITS:1 COG:lin2319 KEGG:ns NR:ns ## COG: lin2319 COG0537 # Protein_GI_number: 16801383 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Listeria innocua # 7 142 3 138 140 136 48.0 1e-32 MENLDKDCLFCKIIRGEIPSYTVFENDDVKAFLDISQVNPGHTLMVPKKHIVNLFDYTKE DAQRYLQYIPEIANAIKAAFPNVTAMNITTNNGKAANQVVMHSHIHFIPRFEGDGLKLMT RNNADKYDEAKYNEVANKIKAQF >gi|227862275|gb|ACKR01000118.1| GENE 21 21894 - 22637 248 247 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 3 220 12 230 312 100 29 1e-20 MTLKIEHLTGGYTGVPVIKDINLEIKPGEALGLIGLNGAGKSTTIKHILGLLRPQKGKIS LNDVVLTRQPTKFKREVAYIPETPILYPELTLKEHLELTMLSYHLDENKAWKRAHELLKM FRLDDKLEWLPIHFSKGMRQKVMIVSAFLADTSLLVIDEPFTGLDPLAVANLIDLIKKAI ADKKMVLMTTHVLADAQQAISNYAVLNRGTIEVVGSLQEIRQHYGLKPDDPFDKLYLALN REDNGNA >gi|227862275|gb|ACKR01000118.1| GENE 22 22630 - 23841 1012 403 aa, chain + ## HITS:1 COG:lin2317 KEGG:ns NR:ns ## COG: lin2317 COG4473 # Protein_GI_number: 16801381 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Listeria innocua # 2 395 8 405 407 144 30.0 4e-34 MRELANRRLSENLKQSVKYLTLVFNDFFILALIFLFGALMFWYAQAMRVIPNNLWFYKPL VGFIMWLPLLAGRLVTLLKEADMQFLFTQDEQMGEYLKPMIRYSMVLPTILIVLLGGILF PFATVKAGIPVWSYVILIISTVLLKLCMLLIEKESLYFYYNYPQWILLVVTLAALLIGSL GSFIYPIEVVVLMVITHFGTKKEKGVFNWRYAIKTEQARKDRVYSIFSMFTDVAEKQVTI KRRRYLDFLLPKSLAKENPNLFLYRRSLLRNPEYLNLLVRMTVFAILVSWLVQDWRWALG LSCLVIFLTVYQLLPMATEFDRNFMYRVYPIERQNRGRDLVKVLTMGLFIQWLLISVCWL IVLPINVNLFEAMAILLGFTMIVTATYLPGRVKKMNQKNFGIR >gi|227862275|gb|ACKR01000118.1| GENE 23 23851 - 24507 807 218 aa, chain + ## HITS:1 COG:L156302 KEGG:ns NR:ns ## COG: L156302 COG0220 # Protein_GI_number: 15672731 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Lactococcus lactis # 1 215 1 213 217 214 49.0 1e-55 MRLRNKPWAVKLVNDHPESVLQNPDPEKKIDWTERFGNDHPIEIEVGSGKGHFITTLAEQ NPDKNYVALELQTTAAGIILRTKLEKGLDNLQILRGDAADINCFFPANSTNVIYLNFSDP WPKTRHEKRRLTYKSFLSKYEQVLKPEGHIEFKTDNAGLYAYSVQSLNNYGMKFDFVSVD LHHEKPEIVEKNIETEYEHKFAAKGNPIYALHAHFEDE Prediction of potential genes in microbial genomes Time: Wed May 25 06:32:18 2011 Seq name: gi|227862256|gb|ACKR01000119.1| Lactobacillus crispatus JV-V01 contig00128, whole genome shotgun sequence Length of sequence - 14845 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 11, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 483 - 542 10.6 1 1 Op 1 2/0.000 + CDS 579 - 899 391 ## COG0526 Thiol-disulfide isomerase and thioredoxins 2 1 Op 2 . + CDS 919 - 1566 947 ## COG0073 EMAP domain + Term 1587 - 1623 4.2 - Term 1575 - 1611 0.4 3 2 Tu 1 . - CDS 1620 - 2939 1098 ## lhv_1650 hypothetical protein - Prom 2962 - 3021 5.9 + Prom 2943 - 3002 8.8 4 3 Tu 1 . + CDS 3036 - 4349 1788 ## COG0773 UDP-N-acetylmuramate-alanine ligase + Term 4373 - 4407 2.0 5 4 Tu 1 . - CDS 4406 - 5740 1307 ## COG0534 Na+-driven multidrug efflux pump - Prom 5787 - 5846 4.0 6 5 Tu 1 . - CDS 5848 - 6825 890 ## LCRIS_01538 surface protein - Prom 6855 - 6914 2.9 7 6 Op 1 . - CDS 7280 - 7720 427 ## LBA1487 transposase, IS605-tnpb 8 6 Op 2 . - CDS 7723 - 8184 340 ## LBA1464 transposase 9 6 Op 3 . - CDS 8159 - 8632 207 ## COG2452 Predicted site-specific integrase-resolvase - Term 8914 - 8957 1.1 10 7 Tu 1 . - CDS 8965 - 9804 892 ## lhv_1633 aminopeptidase N + Prom 10137 - 10196 4.6 11 8 Tu 1 . + CDS 10228 - 11205 1143 ## lhv_1632 bacteriocin helveticin + Term 11227 - 11288 14.0 - Term 11157 - 11191 -0.3 12 9 Tu 1 . - CDS 11283 - 11456 170 ## gi|227878144|ref|ZP_03996123.1| hypothetical protein HMPREF0506_1124 - Prom 11531 - 11590 9.1 + Prom 11432 - 11491 5.2 13 10 Op 1 . + CDS 11611 - 11925 489 ## lhv_1631 putative DNA-damage-inducible protein 14 10 Op 2 . + CDS 11943 - 12824 1078 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs + Term 12831 - 12868 6.4 + Prom 12876 - 12935 6.1 15 11 Tu 1 . + CDS 12965 - 14608 1788 ## COG0151 Phosphoribosylamine-glycine ligase + Term 14618 - 14651 2.2 Predicted protein(s) >gi|227862256|gb|ACKR01000119.1| GENE 1 579 - 899 391 106 aa, chain + ## HITS:1 COG:lin1650 KEGG:ns NR:ns ## COG: lin1650 COG0526 # Protein_GI_number: 16800718 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 10 105 8 103 103 107 53.0 5e-24 MEKIKELTEDQLKEITKEGRTVLEFSADWCPDCKFLAPFMPEIEKDFSDAKFYEIDRDGS IDIAKKLMIMGIPSFVVYQDGKEIGRLVNKDRKTKDEVENFLRSLD >gi|227862256|gb|ACKR01000119.1| GENE 2 919 - 1566 947 215 aa, chain + ## HITS:1 COG:L195751 KEGG:ns NR:ns ## COG: L195751 COG0073 # Protein_GI_number: 15672372 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Lactococcus lactis # 1 200 1 201 208 162 45.0 5e-40 MITSTNKEAYPNTLIVILGHDEGRSSFEEKEDVTRVTNDEGKTIGYNFFNVDKLVDFDKL PNGPVKLSDDELVALNKKLDEVGFTDKLAYGKPTLVYGYVKTCEPHPDSDHLHVTTVEVA DGEEPQIVCGAPNIAQGQKVVVALPGTLMPNGAQIWPGELRGVDSYGMICSARELGLPHA PQKRGIMVVPDSFEVGAEFEPTKCDELIASGEITL >gi|227862256|gb|ACKR01000119.1| GENE 3 1620 - 2939 1098 439 aa, chain - ## HITS:1 COG:no KEGG:lhv_1650 NR:ns ## KEGG: lhv_1650 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 439 11 445 445 645 75.0 0 MKFDKFSPVTGNDLTIIQGQSRYGVDCQDSAIDIYDLTTEKYWQKHPFPGNQLVFFDFQT GQKFEPISSKENQFFFSVIYQYGYFYFLHALLKQDQLTLFKYLPGQEPEIIHQMPLTGLH TYNLSLVYDKAHVWIASFDDNIDFYYPQKSSVVNEPDQTLLFINDTKLYFEQDSDFYSDN DYEHVPDRIIIKDFDDNILSDMQGNIILLSNDKWQKVNDSFILPYWCDQRPLAGQDQYWV TISDYVQFEDLRDDYWQTRIYPGNRLIFFDQKTSKAFSPFSVQPNVCYGEPIFNDGFFYF TQVNTKSNELHIFKYQPEKEAKVIFTCSLNAVNLHNLRLISSDDSVQLVSDNDQGTDTKG CTVKGYFPDKFAITYTEDQIPLFMKNHQLYLSDYEERYNDNGDFIKYVYYTCSKDLSNKL ISKKLGSFNLAPDGKLWQS >gi|227862256|gb|ACKR01000119.1| GENE 4 3036 - 4349 1788 437 aa, chain + ## HITS:1 COG:BH3248 KEGG:ns NR:ns ## COG: BH3248 COG0773 # Protein_GI_number: 15615810 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Bacillus halodurans # 10 437 6 431 433 444 51.0 1e-124 MLDKNKQIWFIGIKGTGMASLALLLHDLGYDVAGSDIEKYTFTQVPLEKVGIDVKNFNPD NIKSNEEQVIVKGNAFKEDNPEVKACLDKDVKWQSYPDTVEEIVQMHTSIGISGTHGKTS TTSLLSHVLGEVAPTSYLIGDGRGKGVADSRFFVYEADEYRRHFLAYHPDYQIMTNIDFD HPDYFKDQADYTSAFQSAADQTKKALFVWGDDKRLQSLKTDIPKYTYGFKDTDDFQAVDI KKSTTGSKFHVLAHGKDLGEFEIHLFGDHSILNSTAVIAVAYTEKVPMDDIREGMLTFKG AKRRFSEKDFGDIAVIDDYAHHPTEMRATIQAARQKFPDKKLVVVFQPHTFSRTKKYQKD FEEILRDVDKAYVTPIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTKNKNSVIVF MGAGDIPKYEDAFEKLL >gi|227862256|gb|ACKR01000119.1| GENE 5 4406 - 5740 1307 444 aa, chain - ## HITS:1 COG:MA1121 KEGG:ns NR:ns ## COG: MA1121 COG0534 # Protein_GI_number: 20089987 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Methanosarcina acetivorans str.C2A # 3 431 13 445 475 201 31.0 2e-51 MDELFAKAPIKKVYFKLALPVVLGMITTMIYNLADTMFVAKTGDTNLVAGITIGAPLFTF LIAVSDIFGLGGSSLISRLFGERNYQLSKRVSSFCMIGGFVTGLILTAILLILENPILHL LGAKAATYQDAADFYRVISIGAAPIIFSIIPQNLIRTEGLATQAMVATMTGTILAIILDP IFLFVFKMGAIGVGIANVTGYLVTDAILIYYVLYKTDYIKLKLKYSKISGKTIKDIVAIG IPGSITNFAQSFGMALLNSSLALYGANKVAAMGITQKIYSIVILVIVGFAFGSQPLIGYN YGAKNWKRLKKILNFDILVQIVYAVISGGLLILFARPVTALFMNQPDIINAGSYMLIATI ITTPIVGIILVYTTVFQSVGNAWAAFIMAIVRQGVVYFIALEIMKDVFGYHGIVWAQAVS DVITCIIGYFIYEKSLDLKDKIKD >gi|227862256|gb|ACKR01000119.1| GENE 6 5848 - 6825 890 325 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01538 NR:ns ## KEGG: LCRIS_01538 # Name: not_defined # Def: surface protein # Organism: L.crispatus # Pathway: not_defined # 1 325 1 325 325 512 96.0 1e-144 MTTKKLATIAAALLISVAPAAAIINQPVHTVQAATQSQKGKVTLKKSFNGTVQVFNSKGN ATTTTQKVNGKKMTVASTVKSGSSFKYYGKPILIQGKKVDAKTSKNYHYTTASYVNIGKK RYIKSLNVSSMDGQNVLILSSNSRIYDKNGHRTTFNGMSLIPKYMLVKTPAKIHATTKND VFFYFANLSGSKKRSLNTTTIKGKPFSALGNGAYIYASNVGFVNGNTLYQASSTTTATIL NKIHVLNNKLKSTSKLLKIGQKVKVDATKTTGKGDSAALYFRIAGTKGKNSQYIYWGDDA EYGMDQESTTDEFQGNFNLDNHLTN >gi|227862256|gb|ACKR01000119.1| GENE 7 7280 - 7720 427 146 aa, chain - ## HITS:1 COG:no KEGG:LBA1487 NR:ns ## KEGG: LBA1487 # Name: not_defined # Def: transposase, IS605-tnpb # Organism: L.acidophilus # Pathway: not_defined # 1 146 152 297 385 244 89.0 9e-64 MDEVKVVSVFKEKDNYYAALPYEEEIELKAKTQQKTAVDVNVGHFNYTEGQINILPVKLQ KLYKRIKHYQRMLARKREVNGKLATKSNNYFAVRTKLQRDYRKAANIQNDLLQKFTTKLV NNYDQIVIEDLAVKEMMMTHVASKGM >gi|227862256|gb|ACKR01000119.1| GENE 8 7723 - 8184 340 153 aa, chain - ## HITS:1 COG:no KEGG:LBA1464 NR:ns ## KEGG: LBA1464 # Name: not_defined # Def: transposase # Organism: L.acidophilus # Pathway: not_defined # 3 153 2 152 385 289 96.0 2e-77 MTIKTQVVKLKVNKTMQKHLDALCDYRRYCWNKGLETWQLMYEAHTLNQKDNPSPNERRV RDELVANKADWQYDLSARCLQLAIKDLANAWKNFFDKSQPDWGIPSFKSKKAPRQGFKTD RAKIVNGKLRLDRPRSISKEPWFDLKSYEAMKL >gi|227862256|gb|ACKR01000119.1| GENE 9 8159 - 8632 207 157 aa, chain - ## HITS:1 COG:SSO1760 KEGG:ns NR:ns ## COG: SSO1760 COG2452 # Protein_GI_number: 15898559 # Func_class: L Replication, recombination and repair # Function: Predicted site-specific integrase-resolvase # Organism: Sulfolobus solfataricus # 10 141 54 181 194 119 45.0 2e-27 MSKNNLSSNKKQVAYARVSTYGQKDDLKDQLSHIRQYANAQGIVLDEEISDIGSGLNYKR QKWNNLLDEVMNNKIDKIYITYKDRFIRFGYDWFENLCKKHGTEIIVLNNIDTSPDKELV DDLISIIHVFSCRLYGLRKYKKKIRGEYLNDDQDTSS >gi|227862256|gb|ACKR01000119.1| GENE 10 8965 - 9804 892 279 aa, chain - ## HITS:1 COG:no KEGG:lhv_1633 NR:ns ## KEGG: lhv_1633 # Name: not_defined # Def: aminopeptidase N # Organism: L.helveticus # Pathway: not_defined # 1 279 226 504 504 524 97.0 1e-147 MREFAIAASNKFKVDHAYANGVRINDYYLASKNSKQYNKLALMTAQDSFHIFTKKIGKYP YKEIDITKGLLGKDTCGMEYPGLIMIDASGFLQKKHPLDRYNELTEDVSHEVGHQWFYGT VGSDEYMEPWLDEGLTNLLENGVYDLTYTKNKAYCAKLMHSKFYTRKNVKRANKILKENA NQFINKNQKANYINYPVNNPPKGVDTEDMAYELGMDFPAVLKVAMGETKFFDALHDYYQT YYLKQATAQDFLNIIRKYDNSKKVNNVINKFIDPKYLSE >gi|227862256|gb|ACKR01000119.1| GENE 11 10228 - 11205 1143 325 aa, chain + ## HITS:1 COG:no KEGG:lhv_1632 NR:ns ## KEGG: lhv_1632 # Name: not_defined # Def: bacteriocin helveticin # Organism: L.helveticus # Pathway: not_defined # 1 325 1 325 325 640 99.0 0 MVKSITPHLVYHLNGMHHVVAQVGVVNGDHVFALQLLHSAHDVLVYRKHEGLTKNIDYTD PHLVMMGFGHTQTWVPANDKDEYFVGAKPNSGNWTTQIARVKYPRLLPERYTSNTQLPRL SHLNHVTDVPYDGHDHLHRVEASVSPNGKYFMIASIWDDGSGHFGLFDLNEVNQKLNENG TKNTPITDLHCLSAFHIDNFDNPSVAPDEEMLQMIDSVQGYAIDDDKNIYISNQLSPKIN HETGEVTTWSRKIVKFPWGETNSDNWQVAMVDGIDLPDRYSEMESIHVNAANDIYLTVAY HQKYIKGGEYKLRTLENQIFHITDL >gi|227862256|gb|ACKR01000119.1| GENE 12 11283 - 11456 170 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878144|ref|ZP_03996123.1| ## NR: gi|227878144|ref|ZP_03996123.1| hypothetical protein HMPREF0506_1124 [Lactobacillus crispatus JV-V01] # 1 57 1 57 57 69 100.0 7e-11 MKATTMKTNRNSKIKKNKSNFWDILSQINNKEKRQEIEELGYNPSEQRAVGKERITD >gi|227862256|gb|ACKR01000119.1| GENE 13 11611 - 11925 489 104 aa, chain + ## HITS:1 COG:no KEGG:lhv_1631 NR:ns ## KEGG: lhv_1631 # Name: not_defined # Def: putative DNA-damage-inducible protein # Organism: L.helveticus # Pathway: not_defined # 1 104 1 104 104 177 96.0 1e-43 MAEKTTGLYVRMNPEKKEKAEAILKKLGLNSATAINMFYDQIILHNGIPFRVEIPNAWDN LDQMNKYEYAKLLGERLNTLSGRKDLLGDVAKRLDAEKNEKKDN >gi|227862256|gb|ACKR01000119.1| GENE 14 11943 - 12824 1078 293 aa, chain + ## HITS:1 COG:TM0866 KEGG:ns NR:ns ## COG: TM0866 COG0330 # Protein_GI_number: 15643629 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Thermotoga maritima # 5 293 3 304 305 138 28.0 1e-32 MMARIIIGIIVVLVIVYVCCGFRIVPQNNEGLVETLGKYSKTVKAGFIFVWPLFQRIRKV PLALQPLEISKYSIITKDNAEISTSLTLNYLVTDSYRYFYNNTDSVESMVQLIRGHLRDI IGRMDLNAALGSTKEINDQLFTATGDLTDIYGIKVVRVNVDELLPSAEIQRAMDKQLTAD REKTAAIAKAEGEARTIEMTTKAKNDALVATAKANAEAVKTQADADAYRVQKMQEALSKA GEGYFRNQSLDSFNQLAQGPNNLIVVGKDEMTDLGKVPALKKVWDASDDKKDE >gi|227862256|gb|ACKR01000119.1| GENE 15 12965 - 14608 1788 547 aa, chain + ## HITS:1 COG:L153005 KEGG:ns NR:ns ## COG: L153005 COG0151 # Protein_GI_number: 15673495 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Lactococcus lactis # 191 545 60 413 413 309 46.0 8e-84 MFGRTYSDLGPVVGQINGEDIRANQLERRGYDWENGYGTPSDGQDTNRDGQPVRKLTKDA KSIIIFWSCSGSTKLLASKVACETGADILEITLRNPYPANYRKTLNRANCERIQNDSSEL EMQLPDLSQYDTIYLGYQTWTMTLSQPMKAFLLEYGGEFSNKEIAPFLSEGGYGSGDSTE LIREFIARDGGKNKKVDWTFVGPENVLCAGITDKFEKAGQKIFGPNQRTAQLEGSKDYAL RFMNKYDVPTARHETFTSAETCIAGLKDFAYPVVIKEDGLAGGKGVTIAKNQDVAEETIR EMFACGQTAVVLEECLVGPEYSMFVAVSEDQFTILPMAQDHKRVGDGDKGPNTGGMGSYS PLPQLKKEDRQRMIDEIVKPTMNGLVQGDYHYCGVLYIGLMMTENGPKVIEYNVRLGDPE TQVVLPRIKNDFAMVIDAAVNHEKLPEIEENDNSILGVVVCSKGYPAHPAPNVKIGKLPE GTNTYIDYANVKGELDNLIGDGGRLFMVISEADNLVQAQDNVYSYLSKLDLPDCFYRHDI GNRALRD Prediction of potential genes in microbial genomes Time: Wed May 25 06:32:47 2011 Seq name: gi|227862254|gb|ACKR01000120.1| Lactobacillus crispatus JV-V01 contig00129, whole genome shotgun sequence Length of sequence - 496 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 15 - 269 57 ## gi|227878149|ref|ZP_03996127.1| possible transcription regulator - Prom 431 - 490 4.0 Predicted protein(s) >gi|227862254|gb|ACKR01000120.1| GENE 1 15 - 269 57 84 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878149|ref|ZP_03996127.1| ## NR: gi|227878149|ref|ZP_03996127.1| possible transcription regulator [Lactobacillus crispatus JV-V01] # 1 84 39 122 122 158 98.0 1e-37 MNYNPSYLGTVFKQNIGQSFHDVLLDKRLTVIYHDLLFTSFPIDVLYRRVGFTNKTSFYN GFKKKYGHTPNEIRNLQNEHLDLL Prediction of potential genes in microbial genomes Time: Wed May 25 06:32:53 2011 Seq name: gi|227862252|gb|ACKR01000121.1| Lactobacillus crispatus JV-V01 contig00130, whole genome shotgun sequence Length of sequence - 4378 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 18 - 4377 4537 ## LBA1634 surface protein Predicted protein(s) >gi|227862252|gb|ACKR01000121.1| GENE 1 18 - 4377 4537 1453 aa, chain + ## HITS:1 COG:no KEGG:LBA1634 NR:ns ## KEGG: LBA1634 # Name: not_defined # Def: surface protein # Organism: L.acidophilus # Pathway: not_defined # 1 958 1 1017 1924 446 36.0 1e-123 MLSKRNYQEHLRKMAPKKERFSIRKFSVGAASVLIGFTFVSMAGSHKVQAADVPDKSVVV DTFNKDKSQELTENKTIEMPKAEKTAVSSVVQKGASANKIEAENTTQVDKNTEGSVKVQE NKDAVQPKTVNNENVLNVSKAQSQSNEAVTKNAAESKVAALRAFRAAPQATQSQDAKDFQ SLVNAMNDSSIGTINITNDITITGKVNGLTTSGISDINKHYLYLQSKGSARDLTINGNGH TINFAGYSIALQDENYHNAAGPWNITLKDMTIEGSKYGYSPISFYSSKTNTENSKLIFDG VTANLNDRPLVDKYGENLPVHFAGDNNIMLNNMSIGYNLVTGKTVKFDSGNTTFNVGGKV TGNAINPDNWVIRSTENASNSENPSTLINEGATVTINAKSDDLRGIYAGRQLTAGQPIYG VTVINGTLNANMAAGHSTAIWSHDLEIGKKGNVTIHTKQTNQADGVENGTSNSVTNYNGT HYAPISLGVGPISSVASPLSKQTASLINNGSLTIIRDTTERTLVPLISMGDGGLSTNTTL KFGVSAGATLDLQDNAGTFQNGTEPNTPLNGLITMWGTSGTDLLEFLTPAYVNLQRTGNI RGTLIRMEGVYNSTTVNGPTPVAQWDQGNKTTIPNDVWYVRYLISANQWGNNSGQFMSKD QHPNTVVAQKGVDTLYNSNATVLMSKNQGADKYENGTMPTEVQQAQHLNSFLNNFNLWRP QRMAMGSKLNDSPDVKIDDFDKYHPEVQTIDGTTRQTLSDLDANKGLKDLIGPDEQPITD FKDIVKHVTWYNSATDKDEWNKIMIQPTDSKDPSARVPYPKPQNPTGNLKTTDGFAWAKV TYADGSVDFVKIPLKVTEKKYSEELTPSYPGVSVEQGKSDSVDPSFKDENDKAADAPAGT KYTAGENTPDWIKVDPDTGKVTVSPTDDTSVGSHDISVTVTYPDSSTDQLTVPVTVTEKS NLAEKYPVSYDKLNVEKPSGDTPATGAVDPKAAADMPEGAITGYEKGDFDAPAGVTIDVN HDTGKVTASVGKNATLGSFEVPVKVTYSDGTYAEVKVPVSITGNKVDPGSGDVVYYGDQS MVVFNGNLTTVHKTTDSHELSAKDSAFQTITYYSDWNKKGNIVSDYNKHVIYKLSADGTK YVNEADATDSFDASAISFNWQKGYGVNTGVDNFSNGSADTLYQLENGAVNSEEQTDANDP SGLAGNSKYRYDFSISDTNVLQKLGLSPAGYNAWANVYYNFLGATGKINIPVNYGSEVST DEAGIKNYLATNSISGKTFVNGNPTGIKWAENGMPGKDGKFAASNMTGIVEFTFDNGTKL NVQVTFKTGSHVPTSGSKVNDDTNLYVERTIEYDVTGTGHSPINSVTQKVHYVRDGYHKI NADGTDAGEIIWNEWKLADGQTAEFPEYSVDQITGYDAYINGAKATQVDAAKVAETNGTP QNGQNITKSKIVL Prediction of potential genes in microbial genomes Time: Wed May 25 06:33:08 2011 Seq name: gi|227862246|gb|ACKR01000122.1| Lactobacillus crispatus JV-V01 contig00131, whole genome shotgun sequence Length of sequence - 3625 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 3, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 922 1138 ## LGAS_1671 hypothetical protein + Term 943 - 996 11.6 + Prom 962 - 1021 4.0 2 2 Op 1 . + CDS 1113 - 1289 201 ## gi|227878154|ref|ZP_03996130.1| hypothetical protein HMPREF0506_1131 3 2 Op 2 . + CDS 1286 - 1633 453 ## PROTEIN SUPPORTED gi|148984516|ref|ZP_01817804.1| 50S ribosomal protein L9 4 2 Op 3 . + CDS 1698 - 1928 370 ## lhv_2927 transposase ORF_B 5 2 Op 4 . + CDS 1882 - 3210 476 ## COG3436 Transposase and inactivated derivatives + Term 3225 - 3265 5.6 + Prom 3238 - 3297 3.8 6 3 Tu 1 . + CDS 3376 - 3540 109 ## gi|282851938|ref|ZP_06261298.1| conserved hypothetical protein Predicted protein(s) >gi|227862246|gb|ACKR01000122.1| GENE 1 2 - 922 1138 306 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1671 NR:ns ## KEGG: LGAS_1671 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 67 306 2310 2552 2552 221 57.0 3e-56 INVVDPVTGKISTSVQTAKFTREDKNGNSGYKDPVTGKTTINPWTPAKQGLRAVNVEQIN GYVAKVDGNVDAVVVTPDSANMVVTITYQANKPEGQNIAVKKDTVPDPADGIKNKDDLPD GTKYTWEKTPDVSKPGDVPAIVVVTYPDGSKDKVDVHIVVDNPTPEPQDVHTTPGVVPDP STAIKNKDEMPDGTKYTWKEVPDVNSVGEKTGIVTVTFPDGTSVDVKVNVFVDPVKENNN TIADSNNTNSSDKNTANAATVNGKSENKKTLPQTGSKSDAAAIVGLAVAIAGSLLGLGVN RKKRQK >gi|227862246|gb|ACKR01000122.1| GENE 2 1113 - 1289 201 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878154|ref|ZP_03996130.1| ## NR: gi|227878154|ref|ZP_03996130.1| hypothetical protein HMPREF0506_1131 [Lactobacillus crispatus JV-V01] # 1 58 6 63 63 83 100.0 4e-15 MIEKQQPIVALGRSSKPKKARPPRNNLLLSLKKNDLELNFYSSLDPEIMNKLLEKVLP >gi|227862246|gb|ACKR01000122.1| GENE 3 1286 - 1633 453 115 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148984516|ref|ZP_01817804.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP3-BS71] # 1 106 2 107 107 179 77 4e-45 MIKLSDLGQVYIVCGKTDLRKGIDGLATLVKEQFELDPFSGKVFLFCGGSKDRFKALYWD GQGFWLLYKRFENGKLNWPRNQNEVQALSSEQVDWLMKGFAINPKIKNTKACEFY >gi|227862246|gb|ACKR01000122.1| GENE 4 1698 - 1928 370 76 aa, chain + ## HITS:1 COG:no KEGG:lhv_2927 NR:ns ## KEGG: lhv_2927 # Name: not_defined # Def: transposase ORF_B # Organism: L.helveticus # Pathway: not_defined # 4 63 10 69 76 66 66.0 3e-10 MSQENLEKIIAQQATTIQNLTDEIKLLREQVAYLTQKRYGKSSEQMPLNGQTSLFDEPDA QDDGERPRRRRSDYYL >gi|227862246|gb|ACKR01000122.1| GENE 5 1882 - 3210 476 442 aa, chain + ## HITS:1 COG:SPy0131 KEGG:ns NR:ns ## COG: SPy0131 COG3436 # Protein_GI_number: 15674346 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 11 442 18 450 450 531 61.0 1e-151 MTENVPDAAVQTITYKRQAHKRKRADLLAALPAEEVHHELGDKHCPDCHHELIEIGKQSV RQELLFIPAQLKRLDHIQHAYKCKYCSQRNLSDKIIKAAVPKAPLNHGLGSASLIAHSLY QKYEMKVPDYRQESDWKKMGLEVSRQMLNYWDLKSSQYYFKPVYDLLKQKLLMRPILHAD ETYYTVLESKTIKTYYWVFLSGKHDQYGITLYHHDPSRSCKVALNFLGNYPGYLHCDMWQ AYEQLPKATLVGCWAHVRRKFHEAVPQQASEKSLAQKGLNYCNRMFYLEQTWENLSKQER YQLRQAKLKPLMQEFFNWCEKNKITVLPGSKLGRAINYTLKHQATFEHVLLDGNLELSNN KAERAVKSLVMGRKNWLFSQSFEGATASGFILSLIETAKRNGLDPEKYLNYLLQKLPNEE ILDSETLEAYLPWQEKIQINCK >gi|227862246|gb|ACKR01000122.1| GENE 6 3376 - 3540 109 54 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282851938|ref|ZP_06261298.1| ## NR: gi|282851938|ref|ZP_06261298.1| conserved hypothetical protein [Lactobacillus gasseri 224-1] # 1 44 1 44 150 84 93.0 3e-15 MEEVFNDGIYECIVVATTVEKYKVTSKVTIILQIRDDIDAVELKKLIEFMLDIG Prediction of potential genes in microbial genomes Time: Wed May 25 06:33:23 2011 Seq name: gi|227862243|gb|ACKR01000123.1| Lactobacillus crispatus JV-V01 contig00132, whole genome shotgun sequence Length of sequence - 2338 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 + CDS 5 - 1183 1089 ## COG3328 Transposase and inactivated derivatives 2 1 Op 2 . + CDS 1267 - 2226 840 ## COG3839 ABC-type sugar transport systems, ATPase components + Term 2271 - 2320 4.7 Predicted protein(s) >gi|227862243|gb|ACKR01000123.1| GENE 1 5 - 1183 1089 392 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 392 1 391 391 372 45.0 1e-103 MNDFTKNITQALFNQDKINDLLRHEIQQAVNDMLESELTAFLGYDPYARNGWNTGNSRNG AYFRKIDTQLGSIEVQVPRDRNGMFHQHTLPDYKQHTDLLEDMVIKLYSKGVTTREIANL IEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDATYIPLRRETFEREAVY IAIGIKPNGHKEVIDYCIAPSENIEVWTELLQNMKSRGLKQVELSLSDGVVGMKAALAKT YPQAHFQRCLVHVMRNICAKVRVDDREAIMNEFKQIHQQANKAAAVDVLHAFYAKWNKSY NRVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDTF IGIQAMSYNDRYFNRIHKGFGQVQDTLESYFE >gi|227862243|gb|ACKR01000123.1| GENE 2 1267 - 2226 840 319 aa, chain + ## HITS:1 COG:SPy1976 KEGG:ns NR:ns ## COG: SPy1976 COG3839 # Protein_GI_number: 15675768 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 1 317 50 376 377 437 65.0 1e-123 MIAGLENISKGTLEIDHQVMNDVAPKDRNIAMVFQNYALYPHMTIYDNMAFSLKLRHYKK DEIDKRVKRAANILGLQGYLKKKPSALSGGQRQRVALGRAIVRDAPIFLMDEPLSNLDAK LRVVMRAEIAKLHQKLGTTTIYVTHDQTEAMTLADRVVVMSVGKVEQIGTPLEVYNHPSN QFVAGFIGSPQMNFFNVHYRNGSITDGKGLNIGIPEGKAKMLEEKGYADKDVIFGIRPED IHSEQAFLETWPNAVVESQVVVSELLGSTIQLYQKVDGTEFVAIVNSRDYHKPGDKVKMG FDVNKAHFFDKDTTQAIVN Prediction of potential genes in microbial genomes Time: Wed May 25 06:33:34 2011 Seq name: gi|227862192|gb|ACKR01000124.1| Lactobacillus crispatus JV-V01 contig00133, whole genome shotgun sequence Length of sequence - 35807 bp Number of predicted genes - 43, with homology - 43 Number of transcription units - 23, operones - 13 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 68 - 334 250 ## gi|227878162|ref|ZP_03996136.1| hypothetical protein HMPREF0506_1137 + Term 437 - 487 6.0 - Term 546 - 602 9.0 2 2 Op 1 . - CDS 619 - 1095 655 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis 3 2 Op 2 . - CDS 1154 - 2272 1170 ## COG0620 Methionine synthase II (cobalamin-independent) - Prom 2414 - 2473 5.5 + Prom 2882 - 2941 8.2 4 3 Op 1 . + CDS 2964 - 3449 350 ## LCRIS_01796 putative protein without homology 5 3 Op 2 . + CDS 3461 - 3643 167 ## COG1476 Predicted transcriptional regulators 6 4 Op 1 . + CDS 4018 - 4164 114 ## gi|227878171|ref|ZP_03996145.1| hypothetical protein HMPREF0506_1146 7 4 Op 2 9/0.000 + CDS 4168 - 5574 700 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 8 4 Op 3 . + CDS 5578 - 6402 656 ## COG3279 Response regulator of the LytR/AlgR family 9 4 Op 4 . + CDS 6383 - 8545 272 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 10 4 Op 5 . + CDS 8555 - 9193 499 ## LJ0775 lactacin F transporter auxillary protein + Term 9211 - 9259 -0.8 + Prom 9275 - 9334 2.6 11 5 Tu 1 . + CDS 9401 - 9580 194 ## gi|227878176|ref|ZP_03996150.1| hypothetical protein HMPREF0506_1151 + Prom 9644 - 9703 5.8 12 6 Op 1 . + CDS 9925 - 10098 140 ## gi|227878177|ref|ZP_03996151.1| hypothetical protein HMPREF0506_1152 13 6 Op 2 . + CDS 10142 - 10282 105 ## gi|227878178|ref|ZP_03996152.1| hypothetical protein HMPREF0506_1153 14 6 Op 3 . + CDS 10298 - 10453 94 ## gi|227878179|ref|ZP_03996153.1| hypothetical protein HMPREF0506_1154 + Term 10464 - 10518 15.4 + Prom 10455 - 10514 9.7 15 7 Op 1 . + CDS 10535 - 11332 336 ## LCRIS_01794 abortive infection protein + Term 11345 - 11393 3.0 16 7 Op 2 . + CDS 11410 - 11682 291 ## LCRIS_01793 hypothetical protein + Term 11711 - 11752 -0.2 - Term 11691 - 11747 6.1 17 8 Tu 1 . - CDS 11763 - 13559 2236 ## COG1164 Oligoendopeptidase F - Prom 13586 - 13645 11.2 + Prom 13585 - 13644 7.8 18 9 Op 1 . + CDS 13727 - 14965 1073 ## COG1316 Transcriptional regulator + Term 14968 - 15007 1.1 19 9 Op 2 . + CDS 15030 - 15719 663 ## COG1811 Uncharacterized membrane protein, possible Na+ channel or pump + Term 15767 - 15812 1.4 20 10 Op 1 . - CDS 15716 - 16099 166 ## LCRIS_01786 hypothetical protein 21 10 Op 2 . - CDS 16113 - 16274 181 ## LCRIS_01786 hypothetical protein - Prom 16368 - 16427 4.6 22 11 Tu 1 . - CDS 16589 - 17140 204 ## PROTEIN SUPPORTED gi|28379311|ref|NP_786203.1| ribosomal protein acetylating enzyme - Prom 17169 - 17228 5.0 + Prom 17131 - 17190 6.8 23 12 Op 1 . + CDS 17285 - 17662 459 ## LCRIS_01784 hypothetical protein 24 12 Op 2 . + CDS 17676 - 19217 1411 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 25 12 Op 3 12/0.000 + CDS 19228 - 19998 846 ## COG2966 Uncharacterized conserved protein 26 12 Op 4 . + CDS 20001 - 20486 377 ## COG3610 Uncharacterized conserved protein + Term 20653 - 20686 1.1 - Term 20641 - 20675 4.3 27 13 Tu 1 . - CDS 20683 - 21396 364 ## COG4990 Uncharacterized protein conserved in bacteria - Prom 21417 - 21476 7.8 + Prom 21347 - 21406 11.0 28 14 Tu 1 . + CDS 21513 - 22043 469 ## LCRIS_01779 hypothetical protein + Term 22049 - 22086 3.3 - Term 22029 - 22082 8.1 29 15 Op 1 4/0.000 - CDS 22083 - 23018 1155 ## COG0208 Ribonucleotide reductase, beta subunit 30 15 Op 2 . - CDS 23021 - 23467 337 ## COG1780 Protein involved in ribonucleotide reduction - Prom 23539 - 23598 5.7 + Prom 23515 - 23574 7.4 31 16 Tu 1 . + CDS 23760 - 24911 826 ## COG0675 Transposase and inactivated derivatives + Term 25040 - 25083 2.9 + Prom 25111 - 25170 1.6 32 17 Tu 1 . + CDS 25234 - 25722 447 ## LCRIS_01775 hypothetical protein + Term 25734 - 25786 9.2 - Term 25722 - 25773 8.5 33 18 Op 1 . - CDS 25777 - 27285 911 ## LCRIS_01774 hypothetical protein - Prom 27308 - 27367 5.7 - Term 27319 - 27357 0.1 34 18 Op 2 . - CDS 27371 - 27673 505 ## LCRIS_01773 hypothetical protein - Prom 27722 - 27781 10.8 + Prom 27681 - 27740 4.5 35 19 Tu 1 . + CDS 27770 - 28312 438 ## COG0194 Guanylate kinase + Prom 28364 - 28423 5.7 36 20 Op 1 7/0.000 + CDS 28483 - 29031 192 ## PROTEIN SUPPORTED gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 + Term 29069 - 29108 6.1 + Prom 29109 - 29168 7.4 37 20 Op 2 7/0.000 + CDS 29300 - 30043 946 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) + Term 30057 - 30095 4.6 + Prom 30084 - 30143 5.2 38 20 Op 3 . + CDS 30213 - 31106 793 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) + Term 31130 - 31164 2.9 + Prom 31352 - 31411 6.9 39 21 Tu 1 . + CDS 31438 - 31857 299 ## LJ1563 hypothetical protein + Term 31940 - 31972 2.6 - Term 32175 - 32219 9.7 40 22 Op 1 . - CDS 32239 - 33267 956 ## LCRIS_01767 hypothetical protein 41 22 Op 2 . - CDS 33285 - 34550 567 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 - Prom 34653 - 34712 8.4 + Prom 34615 - 34674 6.0 42 23 Op 1 . + CDS 34705 - 34899 204 ## gi|227878209|ref|ZP_03996183.1| hypothetical protein HMPREF0506_1184 43 23 Op 2 . + CDS 34877 - 35383 382 ## LSL_0276 hypothetical protein + Term 35384 - 35431 5.9 Predicted protein(s) >gi|227862192|gb|ACKR01000124.1| GENE 1 68 - 334 250 88 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878162|ref|ZP_03996136.1| ## NR: gi|227878162|ref|ZP_03996136.1| hypothetical protein HMPREF0506_1137 [Lactobacillus crispatus JV-V01] # 1 88 1 88 88 142 100.0 5e-33 MGELMKDKYYLALADEVELDNKDNVKKAVIGLIILEVVLQLCYQLYPVLLNLLGKNQRVM ATVILVAYVTVFAVVAKHFSFTTRVFNF >gi|227862192|gb|ACKR01000124.1| GENE 2 619 - 1095 655 158 aa, chain - ## HITS:1 COG:SPy1642 KEGG:ns NR:ns ## COG: SPy1642 COG1854 # Protein_GI_number: 15675515 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Streptococcus pyogenes M1 GAS # 4 157 7 160 160 248 72.0 3e-66 MGKVESFELDHTKVKAPYVRLITVEKGQKGDQISNFDLRLVQPNKNAIPTGGLHTIEHLL AGLLRDRIDGYIDCSPFGCRTGFHLLVWGTPSTTEVAKALKESLEEIRDNIKWEDVPGTT IESCGNYRDHSLFSAKQWSRDILAEGISDDPFERHVVE >gi|227862192|gb|ACKR01000124.1| GENE 3 1154 - 2272 1170 372 aa, chain - ## HITS:1 COG:CPn0143 KEGG:ns NR:ns ## COG: CPn0143 COG0620 # Protein_GI_number: 15618067 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Chlamydophila pneumoniae CWL029 # 5 371 12 373 374 330 44.0 3e-90 MTELHYDIVGSFLRPAELKKARAEFEEGKIKQEELTHVENKEIRELVQKEIDHGLKIVTD GEFRRSYWHLDTFWGFGGIKHTKQAHGYFFHDEETRNDSAQVEGKIKFTGKHPDLSSFEY LKKVVDETGANVIPRQSIPAPAQFYAELVRGEENIAALKKIYSSEEDLLTDISKAYRDLI LALYDAGCRDIKLDDCTWGMIVDKRYWKSHLQDDFSLDDLKRKYLKLNNDAIKDLPTDLR ISTHICRGNYHSTWAAQGGYGLVADYVFAKENVDAFYLEFDNDRSGSFDPIAQIPNDKLV VLGLVTSKKAELEDPQKLIARIKEAAEFHPLNSLALSTQCGFASTEEGNTLTENDQWQKI KLVVDTAKQVWS >gi|227862192|gb|ACKR01000124.1| GENE 4 2964 - 3449 350 161 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01796 NR:ns ## KEGG: LCRIS_01796 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 7 161 4 159 159 182 61.0 5e-45 MSKFEILKLMAFASLFAVMTFILVVVFVGNRRAAKYDERQELIRGRGDRYGFLVLIVGEV ISALFMQTDFYTKHGIAVNFAIIMLSLTVMSVYDIVHGAYFAFNEEHVKANSWLYVVLGI CLILGYIDDFNSALNIMGIYWLIIGVVSLFQLHRDKESDKD >gi|227862192|gb|ACKR01000124.1| GENE 5 3461 - 3643 167 60 aa, chain + ## HITS:1 COG:SPy1934 KEGG:ns NR:ns ## COG: SPy1934 COG1476 # Protein_GI_number: 15675737 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 57 6 62 68 85 71.0 2e-17 MKAARVGKDLTQEDLAQQIDVSRQTISAIEKGNYNPSINLCIKICQALDKTLDDLFWPEG >gi|227862192|gb|ACKR01000124.1| GENE 6 4018 - 4164 114 48 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878171|ref|ZP_03996145.1| ## NR: gi|227878171|ref|ZP_03996145.1| hypothetical protein HMPREF0506_1146 [Lactobacillus crispatus JV-V01] # 1 48 1 48 48 82 100.0 8e-15 MKKLNEKELVEVKGGFADPTVSFFALNDITINKKHRNHFNWKKIFGLK >gi|227862192|gb|ACKR01000124.1| GENE 7 4168 - 5574 700 468 aa, chain + ## HITS:1 COG:SP2236 KEGG:ns NR:ns ## COG: SP2236 COG2972 # Protein_GI_number: 15902039 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Streptococcus pneumoniae TIGR4 # 112 442 127 421 441 72 22.0 2e-12 MFFQALFSPVIDLYIFYRLSGWKFKREDYAFSIVFIGTCVLAGSVVQIDDFLVDIIQAFL IFLFSYLVKKEKKVKFIFGAILFFELLDLLITISAEIILLIFDISSSSMTFVFLLVEFVI IVIIQKYYLKIRKLLNDRNSSIFIGLIFYVYLSSSIVYFLALKSTHMTIVFEVSLSLLVL QIVFSVITYIAIIKVQKGLLTKQEQKEQKFQLELANADRKAKEAENKELILKQQQLSSEM EQLQEYSNYLDKNEDDLHRFKHDYQNILNGLKVSAQEGNTAEVVKILDQYTETQFNKKAL RKYNGVNHIHEKNLKSIAIAKLSKLYSLGLDYSFDCEHDISRIPDSVNILDLVRIIGITF DNAAEESQALIKETGNSNSARIDAMYYQENGDFEFEIRNRVRKSGVATDKISQKNYTTKK HHMGLGLANVKEITHKYEDSMIVNYYVDDGWFTFDLTILPDSESGTEK >gi|227862192|gb|ACKR01000124.1| GENE 8 5578 - 6402 656 274 aa, chain + ## HITS:1 COG:SA1844 KEGG:ns NR:ns ## COG: SA1844 COG3279 # Protein_GI_number: 15927614 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Staphylococcus aureus N315 # 5 233 3 224 238 95 31.0 9e-20 MQYPVFICDDDQNQIEQTKKILGAAEMILSDDEEIEFSIASATDYMGAIDYLKKHKLDGG IYFLDVELGGDTEEDTGFDLAALIKKRDERAQIIFVTSHADLSLITFRRRLGPIDYIVKT SDLDKFRQMMVKTVEVAIYNLHKFNYMKKMTFSYKIGRQTRNVNIDDIIYISTTITPHKL LMILTTGEMQLLGSINQYAKENPMLEKINQSCLVNPKNIESIDLKQHRVSFVNGDVEDFS RSSVKMMKDFLARYNYKTEKLAKQKEINDGHVNV >gi|227862192|gb|ACKR01000124.1| GENE 9 6383 - 8545 272 720 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 479 711 123 355 398 109 33 3e-23 MGMLTYKSIYVPQIDETDCGAACLAMILKNYHSQVSIAHLRHIAKTNTEGTTALGLVKTA EKFNMDVQAVKADMSLFNMKDIQYPFIVHVIKDGGLLHYYVVLKSTKRKIIVADPDPTSG IKKMSKKAFEKEWTGITLFMVPKADFKPVKEKKNNLLSLFPYMFKQKKLVRNIILAALLM TLISICSSYFVQGLIDTYIPNGTFTTLSVLAIGLLIAYVFNSIFSYGQQFLLNVLGQRLS IDLNLQYIKHIFELPMEFFTTRKTGEITSRFSDASRIIDALASTVISLFLDLSIVILMGI ILAVQNMTLFLITLASLPLYAIVILGFSKRFERLNNDQMESNAVVSSSIIEDIQGIETIK ALNSEQVRYRKIDSQFVDYLKKAFKYSKTEAFQTALKTFIRLSLNVIILWVGASVVMHNQ MSIGELMAFNALLSYFIDPLQNIINLQPTLQAANVAQNRLNEVYLVQSEFKGKTSVNDSH DLNGDINFSHVDYRYGYGEDVLKDINLTIKDNEKLTIVGMSGSGKSTMVKLLVDFFSPTK GKVTFNGHSTRSINKHVLRSYVNYVPQTPYIFAGTIKENLLLGSRKNITEKEIEEACQIA EIKNDIEKLPLGFNTQLDENAKILSGGQKQRLTIARALLSPAKVLIFDEATSGLDTITEK KVVDNLIRLKNKTVIFIAHRLAIAERTDNIVVLNQGQVVEQGNHNELMKKRGYYYNLVKS >gi|227862192|gb|ACKR01000124.1| GENE 10 8555 - 9193 499 212 aa, chain + ## HITS:1 COG:no KEGG:LJ0775 NR:ns ## KEGG: LJ0775 # Name: not_defined # Def: lactacin F transporter auxillary protein # Organism: L.johnsonii # Pathway: not_defined # 1 212 1 197 197 158 40.0 2e-37 MSDQDLESSKFYSYKFRNFSTMIILPAFILVILLFLGSFFAVHENVVNSMGVITPDHVLS LQNRAYREGQKLSKGINLTLANGKKRVLKDNAIVHLDNKDSVAMPDIKNRRKLRVVTYVP SSEVAVLNKGQQVRFQIENKQGMSEILNGKIISIGTYPVQQKGMSMFEVETMLKTTKSER KFLRYGMQGKVSIITGKASYFNYIKSKLLNSK >gi|227862192|gb|ACKR01000124.1| GENE 11 9401 - 9580 194 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878176|ref|ZP_03996150.1| ## NR: gi|227878176|ref|ZP_03996150.1| hypothetical protein HMPREF0506_1151 [Lactobacillus crispatus JV-V01] # 1 59 1 59 59 94 100.0 2e-18 MESTVNFEKLNSNKLVSVVGGSHSRNYYNGRGTGRNIRAAGTVANVIWTGAKIISHFLG >gi|227862192|gb|ACKR01000124.1| GENE 12 9925 - 10098 140 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878177|ref|ZP_03996151.1| ## NR: gi|227878177|ref|ZP_03996151.1| hypothetical protein HMPREF0506_1152 [Lactobacillus crispatus JV-V01] # 1 57 1 57 57 77 100.0 2e-13 MKDYLMLLVNISFLVTWFYTPKTQIGTWVAAIVAVVALIVDTVDIINFIFKSRKRNE >gi|227862192|gb|ACKR01000124.1| GENE 13 10142 - 10282 105 46 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878178|ref|ZP_03996152.1| ## NR: gi|227878178|ref|ZP_03996152.1| hypothetical protein HMPREF0506_1153 [Lactobacillus crispatus JV-V01] # 1 46 10 55 55 75 100.0 7e-13 MNNFQKLSTAELQNIVGGRGKSSWWRNVQRGVSQFMSGLRDGLAGK >gi|227862192|gb|ACKR01000124.1| GENE 14 10298 - 10453 94 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878179|ref|ZP_03996153.1| ## NR: gi|227878179|ref|ZP_03996153.1| hypothetical protein HMPREF0506_1154 [Lactobacillus crispatus JV-V01] # 1 51 1 51 51 91 100.0 1e-17 MEELTLDQLKNTIGGKGHSRNYYAGRNFGRTLRNVSQMLNSSMRPISIWNV >gi|227862192|gb|ACKR01000124.1| GENE 15 10535 - 11332 336 265 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01794 NR:ns ## KEGG: LCRIS_01794 # Name: not_defined # Def: abortive infection protein # Organism: L.crispatus # Pathway: not_defined # 1 265 1 265 265 394 98.0 1e-108 MNNKYYLALADEVEFSNKAEVNKTIRNLFILAIILLIGSFVLPHLIVGNMITKWLIVIIF IVAFAYVAEHFILTTKTFNQRLKLQGISKVMMIIYCVFLALILFGALKDKILLFKLPLYQ IMVAALAAILPAICEEFLFRGILFNTFLLVFRKEKYDILWTSIVCSILFGLYHLNNLTSQ SLISTVGQVIITLGMGLFLSYLRVWSNGLIWCMVVHFLQDFSPKILSTDYGTSKIKLTVL VATLIVILMLICIYTINRRFLELSN >gi|227862192|gb|ACKR01000124.1| GENE 16 11410 - 11682 291 90 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01793 NR:ns ## KEGG: LCRIS_01793 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 90 1 90 90 145 96.0 5e-34 MENAKELKSLLVGVKQKVVEDSAAVELINHALSNLEQGVNIEKVVFDLKRDLNNYSLSHN FKLPQPLTELQLKLNENSNKWRDAGLTGSI >gi|227862192|gb|ACKR01000124.1| GENE 17 11763 - 13559 2236 598 aa, chain - ## HITS:1 COG:SP0979 KEGG:ns NR:ns ## COG: SP0979 COG1164 # Protein_GI_number: 15900856 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Streptococcus pneumoniae TIGR4 # 6 598 5 596 600 572 52.0 1e-163 MAIPNRNEVPEELKWDLTRIFKNDEEWEQAYAAAQEKIDQLGELKGTLAKSGKDLYEGLT KILAVKREVENIYVYATMSSDVDTANSHYLGYVSRVQSLANQFEAATSFINPEILSIPSD KLAEFKQAEPRLKNYAHYLEMITNKRPHTLPAEQEKLIADAGDALGVSENTFNVLTNSDM EYGYVQDDDGNMEQLSDGLYSLLIQSQNRDVRKGAFDTLYATYSQFQNSLASTLSGVVKK HNYNAKAHKYDSARQAALAENGVPEAVYDTLIQEVDSHLDLLHRYVALRKKILGLKDLQM WDMYVPLTGKPSLSYNFEEAKEVAKKALKPLGEDYLKHVDYIFNNRVIDPIESKNKVTGA YSGGAYDTDPYELLNWEDNIDSLYTLVHETGHSVHSWYTRNTQPYVYGDYPIFVAEIAST TNENILTEYFLDHITDPKTRAFILNYYLDSFKGTLFRQTQFAVFEQFLHEADANGEPLTA DTLDDVYGQINQHYYGDSVEPGGDIALEWSRIPHFYYNFYVYQYATGFAAATALANKVVH GTPAERDAYLGFLKAGSSDYPTEIMKRAGVDMTKPDYLEDAFKTFEKRLNEFESLIEK >gi|227862192|gb|ACKR01000124.1| GENE 18 13727 - 14965 1073 412 aa, chain + ## HITS:1 COG:BS_lytR KEGG:ns NR:ns ## COG: BS_lytR COG1316 # Protein_GI_number: 16080618 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 58 333 38 304 306 196 38.0 8e-50 MDQNPKRREDYRARRSSLNLHRNRAFAADAPALKPGNFLARLVGVVALLAVCFGVAWAAH MYFTVHSVIDSKNGGNTATSAKIVNRQPISILVLGVDQGIEGRHDRGNSDTMILATANPQ KNSATMTSIPRDTLADIKGDPGDKYFMFRVNSAYEIGGHESSMKTVSSMLNVPINYYLEV NMKALKSLVNAVGGVDVNVPFDFSYDWCDFHKGKQHLNGRHAVAYVRMRKEDPRGDYGRQ MRQRQVIEAIAHKAMSVNTLSNYRKLVDVFNKYVKTNLTFNDMLSLALNYRGCMKNMKSS YIQGHDAWIDGASIQVASTKELQKTSDRIRKNLNLSTQTLNNEETRQNELNDQNNHIKWD DPQAFTNYQIYDQNQDKPASGSNSGYGEGTGTGSSSSSSSSSSSSSGWHFHW >gi|227862192|gb|ACKR01000124.1| GENE 19 15030 - 15719 663 229 aa, chain + ## HITS:1 COG:BS_ydfK KEGG:ns NR:ns ## COG: BS_ydfK COG1811 # Protein_GI_number: 16077612 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, possible Na+ channel or pump # Organism: Bacillus subtilis # 1 222 1 222 229 191 51.0 7e-49 MIGTIVNTLALLVGTTIGCFLKKGINKRFEDVLFIAMGLAALGIGWENVTNNMPKSHYPV LFIVSLALGGLCGTAWDISGHFDRLVEKTGKSNLGKGLATEILLCCIGALSIVGPVIAAV KGDYTMLFTNATLDFVTSMVFGASFGWGMLVVAPVLFCWQGSIYLVAKFLSASFFTGPLV TEISIVGGFLIACSGLALLKIRDVKTLNFLPSLLVPIIFFIIKDLTGWF >gi|227862192|gb|ACKR01000124.1| GENE 20 15716 - 16099 166 127 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01786 NR:ns ## KEGG: LCRIS_01786 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 127 59 180 180 219 94.0 3e-56 MHLCGVTYIDGPRKFFNDALDQKIQIKKILIKKDGSTFQKLQIMNQFQEMLGPHLRLTGP SNFTYLKFDHSIRTNKSILALALLNNQNYMIPISLLNLKFIHPFPNGEKIIKIESRDLKT GKITILN >gi|227862192|gb|ACKR01000124.1| GENE 21 16113 - 16274 181 53 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01786 NR:ns ## KEGG: LCRIS_01786 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 48 1 48 180 86 100.0 3e-16 MNRNLFKNANLKEIGQLRRYMSIIYDNADFYSKHFVNKTIIYTTKNKKNRTYC >gi|227862192|gb|ACKR01000124.1| GENE 22 16589 - 17140 204 183 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|28379311|ref|NP_786203.1| ribosomal protein acetylating enzyme [Lactobacillus plantarum WCFS1] # 26 163 18 155 187 83 33 2e-15 MSQEKQKYYFFPLRFQQQDLKIELVLPQITQAEALYQAVVRDRKQLGQWLAWADQMHSAN DEAKFIKQIQTKMSQQTMLVLTILVNGEPSGMIDLHKLVPNKKAEIGYWLASKYQGRGIV TKSVTALCQYAFSELNLQYIDLLVAVGNDKSSNVAKRCGFKLMGIEPKLINGYDGQIFRL IRR >gi|227862192|gb|ACKR01000124.1| GENE 23 17285 - 17662 459 125 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01784 NR:ns ## KEGG: LCRIS_01784 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 125 1 125 125 218 91.0 7e-56 MQKEEKESIFPVIYGVLSAVISFIAVIFICLHSFRMNLQLAIITASVFAIFFFGLSYFRG HASVEIKRIVYKYKLTDQELAKITGLKASDFPIYHDRLQLILPKRYWPRVLDALQNYEKE HESAK >gi|227862192|gb|ACKR01000124.1| GENE 24 17676 - 19217 1411 513 aa, chain + ## HITS:1 COG:SP0770 KEGG:ns NR:ns ## COG: SP0770 COG0488 # Protein_GI_number: 15900664 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 512 1 512 513 430 44.0 1e-120 MSLLTVKDLSQSFIDKTLYEDANFVLNKEDHMGVTGQNGVGKSTLIKILTGEILPDDGQV TWQNKIDVGYLDQYAKLAPGVTIRGFLRTAFDQLFQKEKELNDLYAKYAENGDEALLEKA GKVQTYLEENNFYDIDTEIEQVASGLGLADLGYDHDVSKLSGGQRSKIILAKLLLQSPDV LVLDEPTNYLDVSHIDWLVDYLNNFAGAFIVVSHDYDFLGRITNCIIDIDFGTITRYTGT LKQALRQKAANRETYLKAYANQQRKIAKTEAYIRKNKAGTRAKSAKSREKQLARMDVLTP PKNNRKARFEFPYVATASNLLLQTQDLVIGYDHALVKSAFNFSVGGDEKVAITGFNGIGK TTLLKTLLGQLKPIYGSYELSVTAKLAYFKQDLTWPNSNMTPLQYLQEEFERKKPKELRQ ALARMGLTAQQAMSPLKELSGGEQEKVKLAKMQFEPANLLFLDEPTNHLDNDTKDALRKA IVNFPGGVIIVSHERDFFRGDWVDKTIDIETMN >gi|227862192|gb|ACKR01000124.1| GENE 25 19228 - 19998 846 256 aa, chain + ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 13 253 9 248 250 187 45.0 2e-47 MSEKRDVQFYQEVMDICLTAGRLMIEGGSEMYRVEDTMLRIARNAGIDDPRVFATPTCVF MSLDGGKLSQMKQIRDRNINLELVDRVNDLSRQFAVKKITLSELKEKIALVSQAPTFPMW LQVLGAAVLSATLMVLFMDNYDWVDFPGAALVGAVGFWSYYEFKKYTKIRFLSELIAAMV MGILAVLFNHFNPQMITDNILIGALMTLVPGLAITNALRDLFMGDLLSGIMRMCEAVLTA LALGGGVALVLKFIGV >gi|227862192|gb|ACKR01000124.1| GENE 26 20001 - 20486 377 161 aa, chain + ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 148 1 148 152 134 48.0 5e-32 MPLWLEIIINVIFSYVASVGFALTINVPHRDLHLSGVSGTVGWMAYWTCFNLGFGRMISN LIGAFLIGILGLCFARIKKSPVTVFNIPALVPLVPGVPAYQAVRALVVGDYSQGENLLLR VAIVTGAIALGFMLSTMCTEVFYKFKYRHFKSARLYIKHKK >gi|227862192|gb|ACKR01000124.1| GENE 27 20683 - 21396 364 237 aa, chain - ## HITS:1 COG:BS_yvpB KEGG:ns NR:ns ## COG: BS_yvpB COG4990 # Protein_GI_number: 16080547 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 49 237 62 249 250 142 41.0 6e-34 MKKQKFDLKYLFLLIPITLILIIGLIYLFNKNKIDNEINWMTMKEEQRLNVPLENQLPDL PNGCEVTSLSMLLNYYDIKVNKYDLADNIAHVDSFTDNGKYRGNPNQGFVGHMSVANAGW CVYHGPLFDVARKYTSHIEDASGSNFLAILKLISDGHPVLIITTTTFNHVNNMQTWETNT GKVNVTPSSHACVITGYNKQKKLVYVNNPYGIKNQPVNWHNLELSYDQQGRQALYIK >gi|227862192|gb|ACKR01000124.1| GENE 28 21513 - 22043 469 176 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01779 NR:ns ## KEGG: LCRIS_01779 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 152 1 152 176 247 99.0 1e-64 MEINLKDLNEKIENQDYIQDLETVKYADISKSKSKIKPYAEKMVKEVIAAFKHNSLIQTQ LAVTGQRPATFALETNIINLPYSNYKRVANFFEEGKEYPLNVYFETRSEYVNVSGFRIDQ LASEVEIEQDPAKIVDQLVEAIIEKLTTIREYKKPEKKEAEKKTATKKATKKTTKK >gi|227862192|gb|ACKR01000124.1| GENE 29 22083 - 23018 1155 311 aa, chain - ## HITS:1 COG:SPy1378 KEGG:ns NR:ns ## COG: SPy1378 COG0208 # Protein_GI_number: 15675308 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 5 296 4 295 319 239 40.0 5e-63 MTEKYYKAINWNDMEDRVDKSAWSRLNDIIWEPRNVPVREDKKEFLQLDKPVQDALLHAF GALSFSSGLQMKNGLEQIKVDAITPEEAAVLNALQYLESIANKGYSYVINELTDSNIAKD VINWADDNPYLQKKIRILNKIYQGGDALQKKVANVILETALYHSAFYAPLYLFGQGKMVR TAEIVKLALRGTSFSGIYPGYKFRLGYQKLGKTEQAELKEWIDNLYDVLIDNEKKHIELM YKGTDWIDDVTHYLYYSVNKAYLNLGFSAKYPDTSDSINPIIEKGVIKNAVLEDFFFYTN DHSLTKFKEIK >gi|227862192|gb|ACKR01000124.1| GENE 30 23021 - 23467 337 148 aa, chain - ## HITS:1 COG:L4702 KEGG:ns NR:ns ## COG: L4702 COG1780 # Protein_GI_number: 15672958 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Lactococcus lactis # 4 124 3 131 140 99 40.0 3e-21 MVAIAFYSITGQTERFIKKTQLSAHQIDDANPKYDMGKSYILIVPSYQDFMMDSVVDFLT YKDNKKNIIGIIGCGNRNFNDLFAQTAKKITATLKVPILYLLEFSGTNQDVKNVRKIVHD LSAGESTKQVQKPKELRGNISFLSDFRD >gi|227862192|gb|ACKR01000124.1| GENE 31 23760 - 24911 826 383 aa, chain + ## HITS:1 COG:TM1044 KEGG:ns NR:ns ## COG: TM1044 COG0675 # Protein_GI_number: 15643802 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Thermotoga maritima # 1 379 4 370 405 127 28.0 3e-29 MIKTQVVELRPNKIMQRELERLCNYRRYCWNLALATWQDMYEARTLDKDNNPSPNEHRVR DELVNNKADWQFALSARCLQLAVKDLANAWKNFFDKTQPDWGKPHFKSKKAPRQGFKTDR AKIINGKLRLDKPRGIKSWFDIPAYEALKMEEVKIASIFRERGHYYAALSYEEEAGLKAK TGKKTAIDVNVGHFNYTEGKINVLPAKLQKLYKRIKHYQRVLSKKRRVNGKSASQSNNYL QVRTKLQRDYRKAANIQNDLLQKFTTELVNNYDQIVIEDLNVKQMMMTHVASKGMQRSLF GKFRQVLTYKCEWYGKELILADKTYPSTQRCANCGYVKTGADKITLQGNKKHGTKHNEYI CYECGYSNDRDDNAVLNLLALTK >gi|227862192|gb|ACKR01000124.1| GENE 32 25234 - 25722 447 162 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01775 NR:ns ## KEGG: LCRIS_01775 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 162 46 207 207 312 100.0 3e-84 MALNIVEIVVLLLAAGWMFNQTFMDNPDLEDANRITSSVKYEPLIMRTGAGNSSYVTINS AKKRYGSQTYTFYRDGSKVTIGSDYASIAYGNTALDVNAEKIPYVKKELAKMDKKYQRAY VAIYTAKYKRNWQNGIGMHAGHLATRYYLIRVPDSSFIKQEK >gi|227862192|gb|ACKR01000124.1| GENE 33 25777 - 27285 911 502 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01774 NR:ns ## KEGG: LCRIS_01774 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 502 1 502 502 914 99.0 0 MKEKTRTVLFWFILIQPFLDLYWFYNGKLAEVLPFTLPTIIRILAVFVIFCMFFSQKQNW QKLGQDKWLILYLALLILYSIIHLIHVKNFNSINPNDYNYSTVSEIFYLIRVLLPLMVIF FTKELNFSQEQFRHVIEGISGLFSFTIVITNLFVISLRSYETGPISANIFEWFVNPNIGY SHMASKGFFNFANMVSAVLFMLVPLMLYFMFSRFNWKIVTLNVVQALAMIELGTKVALIG LIGGVIISILLYVFHLFIVKDVNKNGKAIIVALLIEAGTFAIIPFGPAIQRYNYEKYLAQ QSDDSLTQAKRELNAGLKKYPQGKQRKEFLTNFIGNHYQDYALNKKFVFKSYPYKYDPEF WLKIMNEPGTARMQNRHVEKAMLDQVVKTNNNRLDKFLGISYTRETNIFNLERDFTSQIY SLGWIGMLLFIGPYVIILLYALIKWLMNKEKRTYLISSMLLSIAFMIFAAFSSGNVMDFL TASFILAFVEGSLLASVTRKEN >gi|227862192|gb|ACKR01000124.1| GENE 34 27371 - 27673 505 100 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01773 NR:ns ## KEGG: LCRIS_01773 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 100 1 100 100 117 98.0 2e-25 MKKADVKVGAIVGAKSEEELKKPFQGKVEKIYENSALLAITSYDPVDTTAISDLNNKIVV NFKNLKTARAAKNSKTASTNEVKIEKIAKKNDDKKEADKK >gi|227862192|gb|ACKR01000124.1| GENE 35 27770 - 28312 438 180 aa, chain + ## HITS:1 COG:Cj1177c KEGG:ns NR:ns ## COG: Cj1177c COG0194 # Protein_GI_number: 15792501 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Campylobacter jejuni # 4 176 7 184 207 87 31.0 1e-17 MKKIILIAGPSGAGKTTVSEYLTEKYGIPRVLTHTTRPMRSGEKQDVSYHFETDETFAQL HFFEHIKYGSYQYGSSREALNLAWQKSDLVSLIVDIKGIYSYIKQLGDKAYFLYVTTSTK EELKQRLLKRGDDPAKIKERLSGSELNALPEDLKQYAHILVNDNLTETKNALDALVAKLR >gi|227862192|gb|ACKR01000124.1| GENE 36 28483 - 29031 192 182 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 [Haemophilus parasuis 29755] # 4 173 10 163 175 78 33 5e-14 MNFRRTLVKYTAALSVFFAGISMINVPAVHADDVSSTTINTNNSISDLETTNPDSSSVKK ESATTKERNAVVKLVKKQIGKPYIYGAAGPSGFDCSGLTTYVFKNAINKTLPRTTYGQIT LGKTISVSTKKLKKGDLLFWGNYHVGIYVGNGKFVHAPAPGQNVKQQTLASFYPSSAKRV ID >gi|227862192|gb|ACKR01000124.1| GENE 37 29300 - 30043 946 247 aa, chain + ## HITS:1 COG:CAC0308_2 KEGG:ns NR:ns ## COG: CAC0308_2 COG0791 # Protein_GI_number: 15893600 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Clostridium acetobutylicum # 128 245 54 166 167 112 53.0 7e-25 MNIKSNFVKVTAAAALTLTGVAAVNVIKPDSTNATVQAATTKVKINYIAGYGINIWDNYN GGHFTGQRAQHGTTWNVFDTKTDKKGRTWYQIGDNQWILAQYTVDASSDKAQAVKKAKKA KKSVQATGDASAVITLASAQLGKSYVWGGTGTKGFDCSGLVQYVYSNAAGVKLGRTTYDQ VKQGSTVSMDNLQPGDLLFWGSASAPYHVGIYVGNNQYIHAATPGQGVIKQTLSSYFYPS VAKRVLN >gi|227862192|gb|ACKR01000124.1| GENE 38 30213 - 31106 793 297 aa, chain + ## HITS:1 COG:CAC2943_2 KEGG:ns NR:ns ## COG: CAC2943_2 COG0791 # Protein_GI_number: 15896196 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Clostridium acetobutylicum # 173 297 16 135 136 121 51.0 2e-27 MKHNFFKVGAAAALTVTGVSAITSMKTVRAANFTAIKQVKISYLPGKSLNIWTNYENGQF MGYRAKDGTVWNVAETALDKKGNLWYKVGTREWIEARYTVDVTAGEKAEVSQAPTVKKTE AKQTKTTVNKKTAAVATKTATQKKAEKIAKVKKAKQIVNTAIKKTSQNTNQTSSTQATSK AASIVALAKQQIGKNYVWGAEGPDSFDCSGLVQYVYQKAAGVNLPRTTYDQVKVGQTVSL NNLQPGDLVFWGSTTAPYHVAIYVGNNQYVNAATPEQGTILQTVSSYFTPSIAKRVL >gi|227862192|gb|ACKR01000124.1| GENE 39 31438 - 31857 299 139 aa, chain + ## HITS:1 COG:no KEGG:LJ1563 NR:ns ## KEGG: LJ1563 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 127 1 125 153 131 52.0 9e-30 MAKRHQYLWCLVELPNGKREWYCISKVLRRALLWEKNYLHNRYWRNTLIGSYLNVARTRY HHDRAIITVGRVIRVKILYYPTQDWHWTRNQFIAASQLENFTTAYNYMKHNYAWYNKLLI HHALRHWRRISASKHCNKF >gi|227862192|gb|ACKR01000124.1| GENE 40 32239 - 33267 956 342 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01767 NR:ns ## KEGG: LCRIS_01767 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 24 342 1 319 319 594 96.0 1e-168 MKKHNLLFLFALTFLLVPTNTPVMAAKYSASESKKVRTFQKSYHRLSQKNYNQTTLFTVQ PNFGIPFSAGVLDPDYIKTSMAYVNYYRSLVGLPDDANYANDNVNAQLGAAALASVNAEQ NLRAHGLQGYVKPGYISDTDWDTAENTTLGNINFSESTSGTTAGEIVTDLIREDNNIAGN GNIGHRGMILSTRATRMGIGAAYGTENNVLYSVEHGLFADDILRQPVKSRIVYPAAGVFP YELVGGKTPWSYSTTERISGQPKIYITDLTTKKKRQATQVRNFGTALYGDGYTTTITYRP GKTKLISTHKYRVQIGKHYSYSFKFFRQNSTLKNKQIVKHRK >gi|227862192|gb|ACKR01000124.1| GENE 41 33285 - 34550 567 421 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 39 418 44 424 425 223 36 2e-57 MIDNQPKKTKAYIAGVNLNDQNFDYYMTELANLTEANNMEVVGQSFQNAESIVAGTYFGV GKINEIRTMAQGLKAKVLVLNDELTPVQIRNLGKLTKMRVIDRTELILEIFASRARTKQA KLQVQLARLQYELPRLHPSENNLDQQRGGGLANRGAGESKLELNRRTIGKQISAIKKELK AVAGQEEIKAARRNQSRIPKVALVGYTNAGKSTTMNGLLREFSKEGAYKEVFVKNMLFAT LDTSVRRIDLKDNFSFILSDTVGFISKLPHNLVESFKATLQETRDADLLINVVDASDPNM VQMIRTTQNVLDEIGVKEIPMITAYNKADKTDRNYPQIEGDDILYSAIDPKSIKLLANLI TKRVFANYKKFDLILPLSAGKELAYLHDRAQVLREDYQDDGVHIEANIAPDDQGRFRQYL A >gi|227862192|gb|ACKR01000124.1| GENE 42 34705 - 34899 204 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878209|ref|ZP_03996183.1| ## NR: gi|227878209|ref|ZP_03996183.1| hypothetical protein HMPREF0506_1184 [Lactobacillus crispatus JV-V01] # 1 64 7 70 70 114 100.0 3e-24 MFTDIQLVFKKLSKNVAMPYVKLLNKLIYSSNSNAEEKAIASDWQRIGDDLRKGIISYGR SKAK >gi|227862192|gb|ACKR01000124.1| GENE 43 34877 - 35383 382 168 aa, chain + ## HITS:1 COG:no KEGG:LSL_0276 NR:ns ## KEGG: LSL_0276 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 17 157 2 139 146 96 39.0 2e-19 MADQKPSKKLENDIKKKSDKDSLDEQILDQIQKSEMPKETKKEIMAYLEMYSGPIPLPDI LEGYQKLYPNAAKEIINNGVEESRHRRRLEVARQKRRGWLAWTSLIVVSIVTILCICISA FLVMQRHSVAGSIFGGIGVFTLFGGVVGNIDDLTKNDDLTNSSDHHNN Prediction of potential genes in microbial genomes Time: Wed May 25 06:34:46 2011 Seq name: gi|227862189|gb|ACKR01000125.1| Lactobacillus crispatus JV-V01 contig00134, whole genome shotgun sequence Length of sequence - 2329 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 12 - 71 1.8 1 1 Op 1 8/0.000 + CDS 103 - 1074 391 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 2 1 Op 2 . + CDS 1064 - 2327 542 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid Predicted protein(s) >gi|227862189|gb|ACKR01000125.1| GENE 1 103 - 1074 391 323 aa, chain + ## HITS:1 COG:BS_yveT KEGG:ns NR:ns ## COG: BS_yveT COG0463 # Protein_GI_number: 16080481 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 4 241 3 245 344 112 27.0 7e-25 MKKPILSIIIPVYNVQDYLEDCLKSIISSDLSQVEVLVINDGSTDSSLKIIKKYSEKYSH IICYDKENSGVSATRNFGLKKSRGKWIWFIDSDDLIKTNILERLVQFLINTDLDVFLFQL TMFQKKVTNIYQNDTLVKEKINRYDAMKTLINPKYASFSWNKIFKKSLFSNTLFLPTRDF TEDMAIVYKLYNKANIFFMTSSSLYFYRQRKGSLIHTVSVKNLGASAHSHYEMEDFFEHE YPDLAHKFHQETIVSIVSYFHRLNLRDIKKEKKLYSYIKRYKDYAALNNRYKIEIFSLKY CYPIFKFIGYVGVLSRKFKQNEK >gi|227862189|gb|ACKR01000125.1| GENE 2 1064 - 2327 542 421 aa, chain + ## HITS:1 COG:SA0127 KEGG:ns NR:ns ## COG: SA0127 COG2244 # Protein_GI_number: 15925836 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 1 398 1 395 476 112 24.0 1e-24 MKNKSLGLNAFLNGLKSTLNLLFPLITFPYVSRVLGVKGIGVYNYSNSIVSYFLLIAALG ISTYAIREGAKYRDDKKQINEFASEIFTINICSTLVSYILLFACLIIFTNLHDYVSCILI FSVQIFFTTLGMDWVYSIYEDYAYITVRSISFQIISLILLFIFVRSKNDYLNYAIITVFS SVGSNIFNFVHARMFVKVKLTWDIPWKHHLLPIFIIFASNVAIMVFVNSDITILGIMKNT YVVGLYSVAAKVYSIIKNLLASLLIVTVPRLAMLMGKRRMNEYNKILTKVINMLLLFTLP AMTGLFMLSKEVVLIISGRSFLAATPSLQILCFALIFSLFSWVMSDCVLIPIKREKFVLI GTVISAIINICLNLILIPFWSEKAAALSTVAAEASMMISNLYFSRDIISKIIKSGNFRNN L Prediction of potential genes in microbial genomes Time: Wed May 25 06:34:48 2011 Seq name: gi|227862179|gb|ACKR01000126.1| Lactobacillus crispatus JV-V01 contig00135, whole genome shotgun sequence Length of sequence - 7027 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 2, operones - 1 average op.length - 7.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 470 - 515 0.8 1 1 Tu 1 . - CDS 557 - 1207 664 ## COG0036 Pentose-5-phosphate-3-epimerase - Prom 1311 - 1370 5.8 + Prom 1262 - 1321 4.7 2 2 Op 1 . + CDS 1395 - 1820 361 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 3 2 Op 2 . + CDS 1837 - 3126 1438 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 4 2 Op 3 . + CDS 3129 - 3419 420 ## SAK_0530 PTS system, galactitol-specific IIB component, putative 5 2 Op 4 . + CDS 3416 - 3934 609 ## COG0432 Uncharacterized conserved protein 6 2 Op 5 1/0.000 + CDS 3934 - 4530 538 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation 7 2 Op 6 1/0.000 + CDS 4533 - 5075 389 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation 8 2 Op 7 . + CDS 5098 - 6936 959 ## COG3711 Transcriptional antiterminator Predicted protein(s) >gi|227862179|gb|ACKR01000126.1| GENE 1 557 - 1207 664 216 aa, chain - ## HITS:1 COG:L0047 KEGG:ns NR:ns ## COG: L0047 COG0036 # Protein_GI_number: 15673906 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Lactococcus lactis # 3 213 4 213 216 166 40.0 3e-41 MVKIATSLHSGPKLHMSEILDQLKKADVDLLHIDVMDSIFVPEIDFGSNFTKEISQYTDI PLDIHMMVNNPSRLINEYALSTTTDIGIHYEATQQLHRDLFQIKQLNKKAEVIINPGTPI NSLSAVLNFVDQIMVMSVDPGCSGKSPFIPEVASKIKKLNQLRKEKNYHYLIEADGGITD KNLKVLVDNGLDIAVSGSFIFNGDIRQQVQKLKEIK >gi|227862179|gb|ACKR01000126.1| GENE 2 1395 - 1820 361 141 aa, chain + ## HITS:1 COG:STM3784 KEGG:ns NR:ns ## COG: STM3784 COG1762 # Protein_GI_number: 16767068 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Salmonella typhimurium LT2 # 5 134 19 147 157 92 38.0 2e-19 MDAKSDTDVITQLAKILTQKNIVKKSFTNHVLLREKKFPTGLPVENSLGIAIPHTDSIYV NKSQIAVASLKKPVVFKNMVDATKEVEVNLVFMIAMSQPHEQANLLSNLMNMCQHSQAVE DLIHANNENTVEKILKHYQLN >gi|227862179|gb|ACKR01000126.1| GENE 3 1837 - 3126 1438 429 aa, chain + ## HITS:1 COG:SA0238 KEGG:ns NR:ns ## COG: SA0238 COG3775 # Protein_GI_number: 15925950 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Staphylococcus aureus N315 # 2 367 4 387 419 248 38.0 2e-65 MFAQALHWFLGLGSTVGIPIIIIVLGLIVGLNMVVNMMAADLQPAIKLMVARYHMSLSIM DVGCGVGGPLAFSSSLGALAIPLTIAINLVLIWLGMTRTLNVDIWNLWQPTFIGLLVWAV TNNYIYAIIAIAGGFLLELFMADLMQPITGKFFKLPGIAVTHMMALSATFLAVPLNWLFD KIPGFNKLDASPEKIQKRFGILGDPLVIGLIVGVGIGLLAGFDVSKTLQFGAEMAAVLKI MPKMISMFMESLTPISSATQKFTEKHLHGKKVNVGMDAALTVGHPAVIATSVLMIPISLF LAVILPGNKVLPLGDLTLYVYVFTLLVGAFKGNIVRSLIGATIYSIPMLYLATWMSPLIM KTFKLANYSIATKGQFSFELAGLWTNAIWIWMSQNLGVVGLIILIVVLLGLLFYLNVVKK YNLNQEEGK >gi|227862179|gb|ACKR01000126.1| GENE 4 3129 - 3419 420 96 aa, chain + ## HITS:1 COG:no KEGG:SAK_0530 NR:ns ## KEGG: SAK_0530 # Name: not_defined # Def: PTS system, galactitol-specific IIB component, putative # Organism: S.agalactiae_A909 # Pathway: Galactose metabolism [PATH:sak00052]; Phosphotransferase system (PTS) [PATH:sak02060] # 1 96 1 94 94 108 60.0 6e-23 MKKMLIMCGAGHATSTIVHAKVNNWLEENNLQDQVEIKQSAVTEEVDNIKNNDYDIVIST TIVPDEIKDRVINGVALLTGMGADEVWNEVKKEIEE >gi|227862179|gb|ACKR01000126.1| GENE 5 3416 - 3934 609 172 aa, chain + ## HITS:1 COG:aq_1965 KEGG:ns NR:ns ## COG: aq_1965 COG0432 # Protein_GI_number: 15606964 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Aquifex aeolicus # 22 172 18 134 134 68 30.0 4e-12 MSTFFKELTVETVEGRPSYHMITNDVKKAVKDSGIRNGICLVQTTHTTCSIYFDEYMHDK NYYGDDYLQVDLNHILQKIIPRQTTENYPYLSPGPEHIAYGMKKTDPNYPAVKWTMLNTD GHLRADLLGSNVSLGIKDAELLVGSVGQIFFADFDQTRKRERHISITIIGDK >gi|227862179|gb|ACKR01000126.1| GENE 6 3934 - 4530 538 198 aa, chain + ## HITS:1 COG:lin0502 KEGG:ns NR:ns ## COG: lin0502 COG0794 # Protein_GI_number: 16799577 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Listeria innocua # 4 193 8 197 200 159 43.0 3e-39 MSDDNFIDLFRQEGQEIIKLANTISNNDVLKLVEKIKNCKGNILLTGCGTSAMDAKKATH TLNVIGVRSFYLNPSDAVHGSLGVVDSQDLVIFISKGGSTKELTSFIENIKKKNAYIITI TESPQSVLAKAANMIVKVKVDQEIDEFNMLATTSSLAVISLFDVVACILMKKKNFNKKNF LANHPSGDVGERLNKEVS >gi|227862179|gb|ACKR01000126.1| GENE 7 4533 - 5075 389 180 aa, chain + ## HITS:1 COG:SA0529 KEGG:ns NR:ns ## COG: SA0529 COG0794 # Protein_GI_number: 15926249 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Staphylococcus aureus N315 # 2 180 4 182 182 108 34.0 5e-24 MLSEFKAISNELQHTSCSLTVNKMDEIIQIILNAKTLFLSGEGRSGLMIAGLANRLTQIG LDTHLSSELTAPAISKNDVLIFNSASGTSTLLNSQAETAKKLGALIITFTTNENSPLAKK SDKMIIINAQSKDSYTGSIQPMGSLYEQYSLLLFDTLILRMLKKGYINAHKLREMHSNLE >gi|227862179|gb|ACKR01000126.1| GENE 8 5098 - 6936 959 612 aa, chain + ## HITS:1 COG:lin0919_1 KEGG:ns NR:ns ## COG: lin0919_1 COG3711 # Protein_GI_number: 16799990 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 467 1 480 505 123 23.0 1e-27 MRNNNDLLIILRKNSSSWMTAKMLSMQLGVTERTIKNKIKSLREAGIKIKSSSQGYRYEG DKASFEQNSTIILPQTYSQRKVWLLRHLLQADSSVNIYDLSETLYINEVELRKEIQNLEV ELSDFSLTLNRMGDNYEVIGTERNKRKLLSALIYRELKGTLLTEKIIQNNFKTIDVRSVK KALNKYLEKNNFKIDDFDFNNLLLHTIIMIDRGNDNLSITTSNLEIVNDIVNWIKNKQKV VLSNSDVRQLEEMFLLLSNQKIELKDDDKIEDLFRKIVGFVRRTYNLNLDEKLFKKRFLP HLIRLIERYKSSSSIHNPLMNNIKQSSPTIYECACLIAYAINEAYGIEINEEEIAFIALH VGNSVAEQIQKENKIICQLFMSDYHGNVQRLVSQINSSFGNDLLLLDTVSDVNEILRQTQ LIIVVDSNQQFPQFNTVYVSSFFLSNDVTKLQKVIREIKLVLRSQRLRIGLKQFTSENNF YIDNKHKNYKAVIAELSTKMSKSGIVGKDFENKLLEREKISSTAFGLVAIPHAIDYDSKF SQWFIYINPKGVDWLGQKIYLVFVLAYSSKDDDEFRKVFDDLSTIVIDDKRVADLINSKN YNDFVNRITKVE Prediction of potential genes in microbial genomes Time: Wed May 25 06:34:51 2011 Seq name: gi|227862175|gb|ACKR01000127.1| Lactobacillus crispatus JV-V01 contig00136, whole genome shotgun sequence Length of sequence - 1975 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 174 - 233 6.2 1 1 Op 1 . + CDS 361 - 915 395 ## gi|227878226|ref|ZP_03996197.1| hypothetical protein HMPREF0506_1198 2 1 Op 2 . + CDS 902 - 1300 200 ## gi|227878227|ref|ZP_03996198.1| hypothetical protein HMPREF0506_1199 3 1 Op 3 . + CDS 1310 - 1726 267 ## gi|227878228|ref|ZP_03996199.1| hypothetical protein HMPREF0506_1200 + Term 1823 - 1878 11.6 Predicted protein(s) >gi|227862175|gb|ACKR01000127.1| GENE 1 361 - 915 395 184 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878226|ref|ZP_03996197.1| ## NR: gi|227878226|ref|ZP_03996197.1| hypothetical protein HMPREF0506_1198 [Lactobacillus crispatus JV-V01] # 1 184 1 184 184 319 100.0 4e-86 MRQFYLINDNLSEQKLAEEYLEDEYNLNPNIQESVLRIINFLSNVTLDSSGNIEQLKPEV KEGIIIGYSFKDEYKVPNSNRYIKYEIVKKLMSQNHVYEIRFLSETNEGVRKNCRILFTL NESKVYFVWTYGFTKFPTKDQRKIRKMNLLTDQLGKLAELIHNQLVNNREKNFIGRRNER HEVQ >gi|227862175|gb|ACKR01000127.1| GENE 2 902 - 1300 200 132 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878227|ref|ZP_03996198.1| ## NR: gi|227878227|ref|ZP_03996198.1| hypothetical protein HMPREF0506_1199 [Lactobacillus crispatus JV-V01] # 1 132 1 132 132 181 100.0 1e-44 MKFNKINPNNSRLNSYQFQLSQKIFGKRISLNLNRDEAAKLTGLSLSTYTEVEQGIDLES SEEKYQQVLNKLSSFSRKRIKIKEIDNKTLQHKTSKVIAKMKINESSNKQKTLSFYQVGI KKSVFQPQMVKK >gi|227862175|gb|ACKR01000127.1| GENE 3 1310 - 1726 267 138 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878228|ref|ZP_03996199.1| ## NR: gi|227878228|ref|ZP_03996199.1| hypothetical protein HMPREF0506_1200 [Lactobacillus crispatus JV-V01] # 1 138 1 138 138 245 100.0 7e-64 MSVQLKYNGFIINKLNYEYKGELEQQQDSFYLEFMFDDISVAISANDAIVTLSGHANCSN EENDNDSEYRTLNIKVDYFYDIENPKKVKSPEKIQKIVNNYGVNNAIILFQELVKQITSL DIVGPISSYEFRFPGSLK Prediction of potential genes in microbial genomes Time: Wed May 25 06:35:12 2011 Seq name: gi|227862172|gb|ACKR01000128.1| Lactobacillus crispatus JV-V01 contig00137, whole genome shotgun sequence Length of sequence - 1352 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 6 - 65 9.1 1 1 Tu 1 . + CDS 197 - 1159 1166 ## COG1482 Phosphomannose isomerase + Term 1171 - 1227 14.2 Predicted protein(s) >gi|227862172|gb|ACKR01000128.1| GENE 1 197 - 1159 1166 320 aa, chain + ## HITS:1 COG:lin2215 KEGG:ns NR:ns ## COG: lin2215 COG1482 # Protein_GI_number: 16801280 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Listeria innocua # 2 317 3 315 318 314 51.0 2e-85 MEPLFLIPYFRPKIWGGRKLKDIFNYDIPDGKVGEAWIISGYKDDASIVTEGPLKGMSLR DVYLKHPELFGNPKAKEFPLLVKFLDANDNLSVQVHPDDDYARKVENDSGKTESWYVMQA DPGAYIIYGHHAKNREELAEMIHKGEWDKLLRKVPVKAGDFFYVPAGTIHALTKGCLVIE TQQSSDVTYRLYDYDRVGKDGKKRELHTQKSIDVTTVPHVDPKLDVKTNKDQDAEIKTLV EPPVSPHFYLWQIDLDGTWKTGLKDHPYLLVSVIKGEGKLEADGKSYDLKIGTNLIIPNE MKNFTFTGKMRIVISAPGEE Prediction of potential genes in microbial genomes Time: Wed May 25 06:35:12 2011 Seq name: gi|227862170|gb|ACKR01000129.1| Lactobacillus crispatus JV-V01 contig00138, whole genome shotgun sequence Length of sequence - 1334 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 1232 1043 ## COG3538 Uncharacterized conserved protein + Term 1236 - 1281 1.1 Predicted protein(s) >gi|227862170|gb|ACKR01000129.1| GENE 1 3 - 1232 1043 409 aa, chain + ## HITS:1 COG:L133416 KEGG:ns NR:ns ## COG: L133416 COG3538 # Protein_GI_number: 15673481 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 2 403 20 425 431 466 52.0 1e-131 ECGTKDERLYTIFNKTFLDTLQNALKVDENKNIFVLTGDIPAMWQRDSSAQLRPYLLLAK TDDNIKDIITRVVKRQFFNMNLDPYANAFNMTANNQGHQTDKAKMGPWIWERKYELDSLC YPVQLAYLLYKNTGETAQFDANFVSGIKKMLATIKTEQHHENSNYTFERDCDVPTDTLKN KGKGTPVAYTGMNWSGFRPSDDACTYGYLIPSNMFAVVVLNYIQEIFSSILDDSDIVAKA KTLQNEINEGIQRYGIVEHNGKKQYAYEVDGRGNYVLMDDSNVPSLMSAPYIGYVKPTDD IYQNTRRFILSPDNPYFYIGEYWSGQGSPHTPKGNIWPIGMALVGLTQETKAEKQNLLYL MANTTNGSNMIHESFNPNDPSDFTRPWFSWANMMFCELLLSYLGHDVTL Prediction of potential genes in microbial genomes Time: Wed May 25 06:35:15 2011 Seq name: gi|227862164|gb|ACKR01000130.1| Lactobacillus crispatus JV-V01 contig00139, whole genome shotgun sequence Length of sequence - 6273 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 1, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 8/0.000 + CDS 8 - 466 398 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 2 1 Op 2 7/0.000 + CDS 463 - 786 492 ## COG1445 Phosphotransferase system fructose-specific component IIB 3 1 Op 3 2/0.000 + CDS 834 - 1937 1232 ## COG1299 Phosphotransferase system, fructose-specific IIC component + Prom 1956 - 2015 4.5 4 1 Op 4 1/0.000 + CDS 2045 - 4711 2500 ## COG0383 Alpha-mannosidase 5 1 Op 5 . + CDS 4756 - 6271 784 ## COG3711 Transcriptional antiterminator Predicted protein(s) >gi|227862164|gb|ACKR01000130.1| GENE 1 8 - 466 398 152 aa, chain + ## HITS:1 COG:lin0421 KEGG:ns NR:ns ## COG: lin0421 COG1762 # Protein_GI_number: 16799498 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 1 147 1 147 152 98 33.0 4e-21 MKFEKEDVLLNVNVADKESLLKKISEYAEEIGFTNDPEGLLGSFKKREEEYSTGLQDGFA IPHAKSEAVERVGIIYVRLEKPIEWKTYDNKPVTDVFALMVPPKNAGNTHLKMLANLSTA LLEDDFKQNLKTLNDSQEIAKYIRKKIGANKL >gi|227862164|gb|ACKR01000130.1| GENE 2 463 - 786 492 107 aa, chain + ## HITS:1 COG:lin0422 KEGG:ns NR:ns ## COG: lin0422 COG1445 # Protein_GI_number: 16799499 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Listeria innocua # 4 106 1 103 110 109 59.0 1e-24 MSDVNIVGITSCPAGLAHTPMAAKALELAGKKLGYNVKIEQQGIMGRVHEITPEEAQKAD FVLIGSDQKIEGMDRFKGKKVIRVDINTCIQAPEALLKKCVSVVKGA >gi|227862164|gb|ACKR01000130.1| GENE 3 834 - 1937 1232 367 aa, chain + ## HITS:1 COG:lin0423 KEGG:ns NR:ns ## COG: lin0423 COG1299 # Protein_GI_number: 16799500 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Listeria innocua # 4 350 2 348 370 293 48.0 3e-79 MKFKKLMHDWQGYIMTGISYMIPTIIGGALIVGIPQLIGMACGVNDLGKFAKATGFFHML YQVNQVGWIGIGLVNLVIGGYIAYAIGDKPALGAGFIGGQLATNTQQGFIGAMVAGFIAG YVARWCRKHINVPEKWNSANELILTPLLTTGAVAIVNGLILAGPLAWINTGLLAWIKTMV NDHTNGLILALIMGGMIGVDLGGPVNKAAWAAGNFFFLEGVYKPCLYTNIAICAIPLGYA LMTFIWPKKRFSPQLLEMGRTNLINGTFGITEGAIPFWMKAPQLIFVNVIGGALGAGVGE LMGVSSHIPPLGGIPGILTADNIPAYVCGILACALFIAVVAPLVANFTEDNGKKISEDDI KLDITTE >gi|227862164|gb|ACKR01000130.1| GENE 4 2045 - 4711 2500 888 aa, chain + ## HITS:1 COG:lin0424 KEGG:ns NR:ns ## COG: lin0424 COG0383 # Protein_GI_number: 16799501 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-mannosidase # Organism: Listeria innocua # 1 887 1 874 875 646 39.0 0 MVKTVHVVPHTHWDREWFFTTSRAQIYLLKDLKDVINNLENNVGFNHFILDGQASLIADY LKWRPQDLKKVQNLVKNKKLIIGPWYTQTDQFLPSGENIVRNLLYGMKICSKLGGYMNIG YVPDSFGQESSMPQIYKGLGIDKAVLWRGFPNYEATHSEFIWKGEDGSRINVYRMACGYF IGGLIDENNLDKIMTSEPFASVVKQATTDQILFPQGSDMAPARNNLPQVIEKLNERNKDF KFKISSLEEYIAAVDKVAPKLNMLKGEFNIGKNMRVHKTNYSSRSDLKKMNTLIQDYLTN ILEPVLTLGTQFGISYPKGAADDIWEKMFENSAHDSMANSVSDNVNEDIYLRYKQARDMA TSLVELTLRQISVQIKKPDDKAITLTVFNTTPVAKSGLVTKTIYTPAQNFEIQDKDGEPI PFVVAGFKDETEEVNGATVQLNPGNRIYQPEKVYKTKISLVVKNIPPMGYQQYYLIPNVG KADELSVSNQTTIENEYYKIEVNLDGSLRITRKTDGRVFDKQAILEDNGDDGDSYNYSPA KKDWVIYSTDQAFKVKANKSALLNELKIDYDFRVPADLDERAHRKAFVLMPVSLEIKLKK DNPVIGFRVVTDNRQPLDHRLCIDFDTQIVTDGSIDDIQFGSIKRPFELKKAILDWQEHP NDWQEKPISINTMQTYTSLSDKNNMFAIFPNGVREYEDIGKHHSTIRLTLFRTYGRLGKA DLLYRPGRASGDATVATLAAELKKVLSFDFGVYITDCDFEKANVTNVAKEFKTGLQVFEY AEFLNGRLIFPFNVVKRKLPEEYSLFETKGEFTTSTVKKAEERKGYVIRLYNASFKEKED ELKFNKAPNKVELVDLKEEPLKKLEVVNNTVKLPKLTHDKIVSIYYEY >gi|227862164|gb|ACKR01000130.1| GENE 5 4756 - 6271 784 505 aa, chain + ## HITS:1 COG:BS_licR_1 KEGG:ns NR:ns ## COG: BS_licR_1 COG3711 # Protein_GI_number: 16080911 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 7 478 5 475 499 158 25.0 2e-38 MSITQPRLKSILTSLISKNNDTYISPKALAAKLGVTTRTLRSDIKNLNNSLKIYDVSIKN KRGHGLYLLINDREKFKSLVERIKESGIVTDGGDDYKKRLKDFLLLILTKPREIDDIIST MYISDSTVDKYLKEARKVAKNYHLKIQKDGDLLRMKGSESDIRSCIIDYIDNKRGNNYVR GFSKSEKVIFSDLDLNKLLTKVTNLIVALGLPMSDYSDKNITIHLALELARSKTNNQLRN FNRNIPYIREEYFDKVSKFFEEVFRSYELEYSEAEFHYFIYHLALNYPQLMLEHSNNDVK NKKIHDIVIEFLDRIKDDYVFNLMQDKELIRNLEKHLELLLKVKNINGQRKNPLLNVIVS TFPLAYEMTVTASPLIEHQLNMKLSPDELAFITLHVGASMERLYNNRWDKKRAALVCGSG TATAMLLKARLSSQFSEYLNIVGVYSLYEYQHSDLKNTDFVISTVPIYESKLPVIQVDLS NFQNDSNELYQYLVSVSDKNKVIMN Prediction of potential genes in microbial genomes Time: Wed May 25 06:35:16 2011 Seq name: gi|227862160|gb|ACKR01000131.1| Lactobacillus crispatus JV-V01 contig00140, whole genome shotgun sequence Length of sequence - 3663 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 + CDS 61 - 441 277 ## COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain 2 1 Op 2 . + CDS 452 - 3076 2120 ## COG0383 Alpha-mannosidase + Term 3102 - 3142 4.3 + Prom 3089 - 3148 6.2 3 2 Tu 1 . + CDS 3229 - 3661 123 ## LCRIS_01818 transposase Predicted protein(s) >gi|227862160|gb|ACKR01000131.1| GENE 1 61 - 441 277 126 aa, chain + ## HITS:1 COG:lin0425_2 KEGG:ns NR:ns ## COG: lin0425_2 COG4668 # Protein_GI_number: 16799502 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol/fructose-specific phosphotransferase system, IIA domain # Organism: Listeria innocua # 1 96 5 100 125 74 37.0 3e-14 MIDDLEKYHYVESDFRDNVYKREDLYSTAIGGGIAIPHPIKYAATQSKVSFARLNEPIKW DDKNMIKYVFLISVNKKDYPNIQELFTFLVDLQQNQQFRNLIDKCKTINETKDVLRTIIQ SVGYEK >gi|227862160|gb|ACKR01000131.1| GENE 2 452 - 3076 2120 874 aa, chain + ## HITS:1 COG:lin0449 KEGG:ns NR:ns ## COG: lin0449 COG0383 # Protein_GI_number: 16799525 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-mannosidase # Organism: Listeria innocua # 1 864 1 849 860 661 42.0 0 MVKAYLVNHTHWDREWYFTTQDAQVLSDQLFTQVLDELESHPEANFTLDGQMSIIDEYVE IHPEAKERIHDLVERGQLFIGPWYTQTDANIPAAESLLRNLVIGINDARKYYGRAMMLGY LPDTFGFNANLPMILNQVGIHDFLSWRGTNFKRQAGSVYFKWRALGNSVVFAANFPLGYY TGQIDLASKKNLKDFVKNRLDKGIEFEAKNGNNDEVLIPSGIDQMNIVHNISDTVKKINQ YSKNDVQISTYPEFMKRLRSKKLNTYQGELRYPTYSRVHRTIASVRSRNKRKNFKLEQDI LRRVEPLMLIAKKSGIQVSNGLLIKLWKQLFDSQPHDTLGGSVTDNVAVDIDHRFKQAFE IADGLENYIKKRIAQRLNLTDKDVIVFNTDPYDFDGYKLITFMSASKKIKFPDKYEATLV KEKYTPTRPNIMQLTPNGFEFKDEPGYYKLYVLIKLRMNGLGYKVIHFEDADQELTSLQE LDNNSIANDQLTVVYQDGKFTLRDKNQEYYDVISVYDQANDGDTYDFSPLRKDHEIRLNW NGKLTKKETSTYKELILEGKWLLPYSLDDRLKEDGQKKEVPFKLTVSLTNGEKVLSCRLH INNTVLAHRLRLRMRSRMQTEYAHTQIQGGFRKTKNEPIDDNWNDEFVEKPVNIYIFDRA VGQNDGKNGLYFFGKGEKEYELVDDSIYVTLMATTGQLGKSNLLWRPGRASGDTTSVGHV MTPTPMAEELGNNDFEFGITPFTGEELSEKNIATRLDKWLSPNVSYQIQKYNLFVNRLDN KIWDIEFPDNLPKITDEESYLDLNLLDGIEVSALYPAYTIKDTMVLRLSNMTSETIDLSF LKKKGYIKTNALEEVDRSDYKVGPYDMNTFIRKM >gi|227862160|gb|ACKR01000131.1| GENE 3 3229 - 3661 123 144 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01818 NR:ns ## KEGG: LCRIS_01818 # Name: not_defined # Def: transposase # Organism: L.crispatus # Pathway: not_defined # 1 141 1 141 344 242 85.0 3e-63 MTNSNSSVSRHYHQLTSEQRGQIQAMLDSGITSCSAIARKVGCHKSTISREIRRGSVLQR DHNYLLYEHYYADIAQIYHDKRRRNYYKRDPLKHYAVFLRMLSRRFKAKFDATSIDEFVG EFKRTMPGYPCPSTPTVYRILIRA Prediction of potential genes in microbial genomes Time: Wed May 25 06:35:21 2011 Seq name: gi|227862151|gb|ACKR01000132.1| Lactobacillus crispatus JV-V01 contig00141, whole genome shotgun sequence Length of sequence - 7388 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 5, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 100 - 783 278 ## COG1737 Transcriptional regulators - Prom 826 - 885 3.5 + Prom 725 - 784 3.3 2 2 Op 1 . + CDS 820 - 1476 725 ## EF2258 hypothetical protein 3 2 Op 2 . + CDS 1520 - 2839 1242 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 2878 - 2942 4.3 + Prom 2897 - 2956 7.3 4 3 Op 1 . + CDS 3094 - 5250 2349 ## LCRIS_01718 putative protein without homology 5 3 Op 2 . + CDS 5267 - 5830 602 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 5833 - 5890 4.4 + Prom 5973 - 6032 5.5 6 4 Tu 1 . + CDS 6068 - 6601 708 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase + Term 6610 - 6646 4.2 7 5 Tu 1 . - CDS 6627 - 7169 339 ## LCRIS_01715 transcriptional regulator - Prom 7206 - 7265 7.1 Predicted protein(s) >gi|227862151|gb|ACKR01000132.1| GENE 1 100 - 783 278 227 aa, chain - ## HITS:1 COG:CAC3424 KEGG:ns NR:ns ## COG: CAC3424 COG1737 # Protein_GI_number: 15896665 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 12 224 7 225 235 68 26.0 1e-11 MNIQTICEKYQLNKDEEKILLYMNDHRSELKNLRIRELAKRTFTSSSFIVKTCKKMGLSG YSELVFLITDTPKFPNNTENDLKVRSCVKPFSNLMDKHKDSMIMILGSGFSQNIANYMSE YLNLYGFRCTANSHLELLRKNKDALIIVISNSGETKRLAELCIHAKQNNRDILSFVGDRN STIAKNSSLVISSDTFTPSSFDSHYPQLFFGLTLIYFELLMSYFLSK >gi|227862151|gb|ACKR01000132.1| GENE 2 820 - 1476 725 218 aa, chain + ## HITS:1 COG:no KEGG:EF2258 NR:ns ## KEGG: EF2258 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 16 218 3 205 205 295 69.0 1e-78 MSENDVKKNEVPQNRDREFLADPWARTRTRNGLAADEVISALQKSIRKGKERAACEFAYE MYISSPQMEEKLWRRLQAISVEDIGMGNPKAPILINSLNQMRQNFSYNEPDRAMMFVHAI RYLCESTKDRSSDLLKNIIIKNFALGYVPKIPDYALDKHTTRGKKMGRGSMHFLEVDSKV TPQLKVNNHYWDEYHKIRENWDDSKVIPNAFKFNPYQI >gi|227862151|gb|ACKR01000132.1| GENE 3 1520 - 2839 1242 439 aa, chain + ## HITS:1 COG:VC1282 KEGG:ns NR:ns ## COG: VC1282 COG1455 # Protein_GI_number: 15641295 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Vibrio cholerae # 9 434 8 425 446 209 31.0 1e-53 MAETTAKKESLITKLDKVLTPIGQKLGNEKHLQAISNGMLFGLPFWVIGSFFLIVANPPI VMDKYNPATANFFMKWIAAWKYWAVAHYAQITIPYNMTMGMFGMICAFGIAYELSKGYRR EHPATDGMISLVTFLMVTTTVDKNNKIDINNLGTNGLFVAIIIGLLAVEINRLIEKSNFK LKLPDSIPPMVANFINSLIPLLVNIFIFYGADLILVGMTHADFTTFIMKCLTPATFLANS LWGYILIVTLGNLLWLIGVNGSNVIFPIVFATGIAATGANAALVAKGLAPTHLMNLQMFR IAVLGGSGNSLALCILMMNSKVEKYRALGRLSIIPGICSINEPIIFGTPICFNPILGIPF LIAPVINIVLTYFAESLHWIGMGYIVDPSFTPFFFQAYMSSMDWRNIIFECILIAIGIVI YLPFFRVAEQNELKNIPAA >gi|227862151|gb|ACKR01000132.1| GENE 4 3094 - 5250 2349 718 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01718 NR:ns ## KEGG: LCRIS_01718 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 718 1 715 715 1015 73.0 0 MTEDAKLKQVINKIDSAIGWIYSLGSIVPNSLSAELNPDDDSVLIYLQTPNNLTIPSLLL NDQTYGYILEQDDASNGEGIIVSLAGSFMDATKPEERVDLDPKQLRQDMDYLYNAWYRLT QKNAEINSYYRDTDKMSTADVRENLQSILAASGLYGADILAQTETQLAQMPDAYLLAIPK EVQRSTDDDEAAGRVVYHMVMEIPNDSYLFKPDPDFSLLKNAPDKADQAVGNNEDSNLIG DPIERPEAEKLAAKFRQASEALVQNNLIPADSFGVEYDEEQHDLIVYLQSPNDVMIFRND ILGTKIATMIENESVEQCAAHLAISFILNFARDLQDTAGQISDDDWDAYCADLDYLYRLV FGFSYSIPDVDGYLSNTNERTLDDLRQKLNSYVQASDNEDKDQLIEIINKLGYGYLYSLM AYIDSISDDQDANVITNFLGHSLIYVPNQDIDAGFTPDPNFSVLDENNPHDTWQNGSIVI DSDQGDTSGIVAKLYPKIQSAAGNLTKRCDFEPGSINVQYSAKQGLTGILFQTPGRVLSP SFAWNAQNAAQLVDMEPEQLETQLTLDYVFGAFGEAIDDLANEIRKNQGQLDQDSLERIN VDLAYNFERVTKLSHTYADMDPALKEMMGDDYAERKMRDFLTTSMVVDDNDAAYQVDGLL IRATYAQVFALYRLMHDSKLLEPKATTLLDMLKHQPEHPIKFDVVDDVDLFDNDHDDE >gi|227862151|gb|ACKR01000132.1| GENE 5 5267 - 5830 602 187 aa, chain + ## HITS:1 COG:lin0816 KEGG:ns NR:ns ## COG: lin0816 COG0454 # Protein_GI_number: 16799890 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 1 185 1 185 185 111 31.0 6e-25 MIRRARKTDFPFVYPILKQIFDEMQMKSIESLPEDQFYSLMKLGFISEDYRYSYRRIWVA EDHGKVTGILDMYPYKDQKIIDVVLRHNYANAGLLISTVIFDDQEAWPHEWYIDALAVHP DHWGEHIASRLMDEAEQVALAHGYHIISLNVDKENPRAQALYKHKGYEIEKSMTIGDRTY DHMIKKI >gi|227862151|gb|ACKR01000132.1| GENE 6 6068 - 6601 708 177 aa, chain + ## HITS:1 COG:lin0251_2 KEGG:ns NR:ns ## COG: lin0251_2 COG0634 # Protein_GI_number: 16799328 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Listeria innocua # 1 177 1 178 179 167 48.0 1e-41 MNNDIEKILFDQAQLDKRMDEMAAELNQKYEGKQPIVIPVLNGAMIFASDMIKRLNFKLT VDPIKASSYAGTESTGKVKITQDIKSDVKDQPVIFMEDIIDTGRTLQALSEVMKDRGAAS VEVVAMLDKPTTRVVDFHADYYGFQAPDAFLVGYGLDYNGLYRNLPYVGILKRKIYA >gi|227862151|gb|ACKR01000132.1| GENE 7 6627 - 7169 339 180 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01715 NR:ns ## KEGG: LCRIS_01715 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 180 1 180 180 320 98.0 1e-86 MYFTTTRRKTRKDRIHIQFFAQVLKKDLSQGTVYKYSVQRFCEAANICRGTFYRNFKNLN DLFSQVLQFEINSCFNNPQSSTLHKKAHNLLIEIETNATYYRNVHSLASSQIRTQVDQAL FREMQKLLFNSNLSNKHIQSISSLILIRILDWIAHDYQDNVITVYTDVECLFLHHIKKSC Prediction of potential genes in microbial genomes Time: Wed May 25 06:35:37 2011 Seq name: gi|227862146|gb|ACKR01000133.1| Lactobacillus crispatus JV-V01 contig00142, whole genome shotgun sequence Length of sequence - 5201 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 197 - 233 0.2 1 1 Tu 1 . - CDS 241 - 1074 783 ## LCRIS_01714 membrane protein + Prom 1631 - 1690 4.9 2 2 Op 1 1/0.000 + CDS 1896 - 3233 1765 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases + Term 3276 - 3314 4.4 + Prom 3238 - 3297 3.7 3 2 Op 2 . + CDS 3365 - 4138 621 ## COG1737 Transcriptional regulators 4 2 Op 3 . + CDS 4150 - 5142 687 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Predicted protein(s) >gi|227862146|gb|ACKR01000133.1| GENE 1 241 - 1074 783 277 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01714 NR:ns ## KEGG: LCRIS_01714 # Name: not_defined # Def: membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 277 1 277 277 503 99.0 1e-141 MTKNVKLLSLIGIAAALAGGSVAISNNNNSTVQAASITLPAGYTKSAIIKWNQTGKASKA LIDASKKGMKENTNSDAGSDNTLVNVTKLTASQQKELSQYTLSLINSARHQLGKQGWTYK RGALHFANRVANEYYSHNRSCWDADHYVTGIERAAKASGLNSKVGQVYEDEAGLPISSTY NTNLRPMSVLKNQIYFNVKQMLFGGFAGSDSQMNDSSRYTEWEHAGDLLGCRTKSYDAKT KYFGISFSGLKGDQSKVSVHMMGVAKCYIQNYRKFNH >gi|227862146|gb|ACKR01000133.1| GENE 2 1896 - 3233 1765 445 aa, chain + ## HITS:1 COG:CAC0533 KEGG:ns NR:ns ## COG: CAC0533 COG1486 # Protein_GI_number: 15893823 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Clostridium acetobutylicum # 4 444 2 440 441 535 57.0 1e-152 MDGKKYSVVIAGGGSTFTPGFVLDLIKSQDKFPLRQLKFYDNDAERQEKIAKAVEIIMKE RAPQIKFSYTTDPKEAFTDVDFVMGSIRVGKYHMRSLDEKIPLKYGVNGQETTGPGGMAY GLRSIPAILQIIDWMEEYSPNAWMINYSNTIAIVAEACRRLRPNAKVINICDMPIDDMDR MAAICGLDSWHDIDFNYYGLNHFGWWKEVRNKKTGEDLMPKLKEYVKEHGYWVGGDYDKD TEASWEATFKKVADEYKLEPETLPNNYMQYYYFPQYEVANADPKHTRTDEIREHRQKIVF GECERIVKVGTAKNNIWDISGLHSEYIVDICHAIAFNTHEKFLANCANNGAISNMDPDSI VEVPALFGADGIQPMATGKAGRFQRGLMMEQQTCEKLVVDAYVEHSYNKMLQAFALNKTV PDASVAKKILDDMIPVNAPYWPELK >gi|227862146|gb|ACKR01000133.1| GENE 3 3365 - 4138 621 257 aa, chain + ## HITS:1 COG:BS_yfiA KEGG:ns NR:ns ## COG: BS_yfiA COG1737 # Protein_GI_number: 16077886 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 243 1 234 254 81 24.0 2e-15 MDLETAVMKKKESFNETDKAIVSYLLKYPEVASQLSLLELAQKLYVSKSAIFRLSKKLGL SGFSELKFELSELATRKEQNVKNKQTLDFNTDLQKIIAETFKYFKGLNLQPFFADLDQAE TIYLYSTGWQQQIIAEYLAHNFFLIGKKAIILPSARDEVALLGRSARENDMLFVISFGGF NKTIIEELKKIDVVNTELKLVSLTSWQTGKLASLSDYSFFFKTTPFQFSKQNAVTFSSAY VLIDLIMNSYGRHCDLR >gi|227862146|gb|ACKR01000133.1| GENE 4 4150 - 5142 687 330 aa, chain + ## HITS:1 COG:BS_ansA KEGG:ns NR:ns ## COG: BS_ansA COG0252 # Protein_GI_number: 16079415 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Bacillus subtilis # 1 329 1 329 329 262 41.0 8e-70 MKKILLLSTGGTIASVASDAGLVPKETGEELIKMLGKLPYDIQVRDILQLDSSNIQPEEW KFIAENIYKYRNDYDGIVVSHGTDTMAYTASMLSFMLKNINIPVVLTGSQVPINVVLSDA HDNLRLAFAAAATCPPDVYLAFHNKVMLGCRSVKVRTTNFDAFESVNVPPVATVSSDGLV FNSEHFQREHDGQPTLNTKINSHVSLVKLFPGFDPNLLFAMVNSGCRGIVIEAYGLGGMN FIRRNMVAAIGKLIRQGIPVVASSQCLYERSDLTKYEVGREALLEGAISACDMTSESAIT KLMWALGQGMDVHQIADFFDTNVAGEVTLK Prediction of potential genes in microbial genomes Time: Wed May 25 06:35:46 2011 Seq name: gi|227862128|gb|ACKR01000134.1| Lactobacillus crispatus JV-V01 contig00143, whole genome shotgun sequence Length of sequence - 15670 bp Number of predicted genes - 16, with homology - 16 Number of transcription units - 10, operones - 4 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 153 - 212 6.1 1 1 Op 1 . + CDS 267 - 512 279 ## LCRIS_01710 hypothetical protein 2 1 Op 2 . + CDS 568 - 966 446 ## LCRIS_01709 PTS system, IIA component + Term 977 - 1016 2.1 - Term 957 - 1011 9.7 3 2 Tu 1 . - CDS 1016 - 3655 2684 ## COG0474 Cation transport ATPase - Prom 3694 - 3753 3.8 - Term 3677 - 3722 8.0 4 3 Tu 1 . - CDS 3835 - 4521 386 ## LCRIS_01707 hypothetical protein - Prom 4553 - 4612 7.2 + Prom 4574 - 4633 6.7 5 4 Tu 1 . + CDS 4662 - 5933 1107 ## LCRIS_01706 hypothetical protein + Term 5950 - 5992 8.9 - Term 6021 - 6071 13.2 6 5 Op 1 . - CDS 6072 - 6722 894 ## COG0406 Fructose-2,6-bisphosphatase - Term 6730 - 6774 3.3 7 5 Op 2 . - CDS 6783 - 7475 597 ## COG5549 Predicted Zn-dependent protease - Prom 7495 - 7554 8.5 + Prom 7494 - 7553 7.8 8 6 Tu 1 . + CDS 7628 - 9934 2238 ## COG3973 Superfamily I DNA and RNA helicases + Prom 10190 - 10249 5.7 9 7 Op 1 34/0.000 + CDS 10368 - 11015 415 ## COG0765 ABC-type amino acid transport system, permease component 10 7 Op 2 16/0.000 + CDS 11029 - 11649 372 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 11 7 Op 3 . + CDS 11653 - 12468 987 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 12 7 Op 4 . + CDS 12470 - 12919 308 ## COG2153 Predicted acyltransferase + Term 13077 - 13121 0.5 13 8 Tu 1 . - CDS 12916 - 13473 425 ## COG2755 Lysophospholipase L1 and related esterases - Prom 13590 - 13649 6.5 + Prom 13445 - 13504 11.4 14 9 Op 1 . + CDS 13533 - 14447 783 ## COG1072 Panthothenate kinase + Prom 14476 - 14535 3.0 15 9 Op 2 . + CDS 14565 - 15140 870 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) + Term 15153 - 15196 8.7 - Term 15141 - 15184 4.1 16 10 Tu 1 . - CDS 15187 - 15588 81 ## LCRIS_01695 membrane protein - Prom 15610 - 15669 4.7 Predicted protein(s) >gi|227862128|gb|ACKR01000134.1| GENE 1 267 - 512 279 81 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01710 NR:ns ## KEGG: LCRIS_01710 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 81 17 97 97 132 96.0 4e-30 MIEEMLNRMPLIHGENDVFKVTADEMDDFLASVTPDMDGKQVTEQGKKILHTCLQVLKLR QKDERLTPEQSSLLADIEQLN >gi|227862128|gb|ACKR01000134.1| GENE 2 568 - 966 446 132 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01709 NR:ns ## KEGG: LCRIS_01709 # Name: manX3 # Def: PTS system, IIA component # Organism: L.crispatus # Pathway: Fructose and mannose metabolism [PATH:lcr00051]; Amino sugar and nucleotide sugar metabolism [PATH:lcr00520]; Metabolic pathways [PATH:lcr01100]; Phosphotransferase system (PTS) [PATH:lcr02060] # 1 132 1 132 132 238 97.0 6e-62 MELLIATHEGLAAGLMSAHDMLVGKNDQILTIELNDTGIRDFKARFAKVMNKYQNSQILV LTDLKNGTPHLVASEYEDMYPERIRVVSGVNLPMVLELSHKMINASLNESTEKAIQIGRS QIDVDQLAAAKV >gi|227862128|gb|ACKR01000134.1| GENE 3 1016 - 3655 2684 879 aa, chain - ## HITS:1 COG:SPy0623 KEGG:ns NR:ns ## COG: SPy0623 COG0474 # Protein_GI_number: 15674699 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pyogenes M1 GAS # 13 847 13 866 893 643 44.0 0 MDNHRQKPWAVEQSEVLTNTKTTETGLTEDEVRIRQQAGLNELAAKPPKTVIQMVKEQIF DPMIGILLVAALLSAMFGEYTEAIIIATIVVLNTIIGVVQEKKAQSSLAALRDISAPTAH VIRNGKELIIPAKELVVGDIVTLHDGDMVPADLRLIETANLKIQEASLTGESVPVEKDAA AVLNPDCALGDRINMAFSSSIVTYGRGQGVVTAIGMQTEMGAIAGMLEDPTEVQTPLKRK LAKAGMVLTTIGLIICSLVFAIGAFYGRPLLPQFLVAISLAISIIPEGLPATATIVMALG VKRMVKRNALIKKLPAVETLGNATVICSDKTGTLTLNKMTVTQAATNDFSQSHIVDQLAA NKTNQTLAYASALCNDASLNGEKEIGDPTEVALILFAQKLGFNQSNLKKEFPRLFEQPFD SDRKRMTTLHKIDGQLTVFTKGATDEMLPLCTHIMTNNGVRKITPQDKKQIAHLSHQMQA GALRVLGFATKIVDNLPEANADLENNLTFIGIVGMIDSPRKEVAASVKTCREAGIRTIMI TGDHKVTALAIAKKLNIYQPGDLAISGTELDQMSDAELDQAVEKATVFARVSPADKLRII QSLKRNGEVTAMTGDGVNDSPALKAADIGVAMGVTGTDVADMILLDDSFTTIAHAIKEGR RVYRNIQKVIQFLLVGNIAEITTLFAATIFNWDAPLLAVHILWVNLATATLPALALGVDP ASKNIMKHKPVKAGTLFEKDLVIRVITQGIFVALLTLTGYFIGKEIGNQVVGQTMAFSIL ALAQMIRSFNQHSNTDPIWKRSAGNNPWLTVSFIISAFFMGIILFVPAMQDAFHITSLSA GQWLIVIALALLSIAQVELVKGWAKFRNIFINDNNLIED >gi|227862128|gb|ACKR01000134.1| GENE 4 3835 - 4521 386 228 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01707 NR:ns ## KEGG: LCRIS_01707 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 228 1 228 228 398 97.0 1e-110 MEVNFDFVKNSSFKEAFPTAEKIHKLYTIDDYRDVISNSRLLLESLIKKIFKLENLSPYY TVHDGEHRNLRNNTHYLRNELDYPLSIMDLFDEIRHIGNAAVHDNQIEPDQKQAWHCICD LHDILVFLINSYDGQDLYYLRPDIAMEAQTDEDHYYVRQNKQPKIMKLHDHQNTKKKQSA SAPKKAKHVKHFSSKQHIEQTNSASQTKTTPSTKDNWLRKIKELFHHD >gi|227862128|gb|ACKR01000134.1| GENE 5 4662 - 5933 1107 423 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01706 NR:ns ## KEGG: LCRIS_01706 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 423 1 423 423 779 99.0 0 MKKHKKIWISGVIILLIGIAWLIGNFYYTKERQIDRIVAKMQDPKTELAQYVTASTPDMD VTDKSLKPLQNYFKEHHSAAKRLAYNLRHNRDHGEIRLIQDGRNFLLFPKYKLWIQVYRP QVKTNHANSTLTVNQKDYGEMEGGNQNYYQDLGMVFPGRYHILVKSKVNGRHLDADSIVN IWSDKTVDMKIKTATFQVRSVPNGTIYINDRKAGKLNQHGSYTFKDYPIAKRMEIYIKSK ADGQTIKSERVTDLSQSISSEFSNSEDDVTDYDGTAEYQGNGEKDVYQDAEGDYIVNPIW PGLIKVGDAAKLLYNTLKSPNADDFENGKENADYKKIAKQLKEWHKKKSIKKLSVKIKVL SVLPGKRNYSRINYEVTFIKKYKDKSKKKERLSYQNAVFHQKDGKQLIQTLGDCKLIKTK TSD >gi|227862128|gb|ACKR01000134.1| GENE 6 6072 - 6722 894 216 aa, chain - ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 4 212 7 216 224 130 35.0 2e-30 MKRIYIVRHGQTYINRYNKMQGWCDTPLTTPGIEGAEEAGKALSEVPFDIALSSDLKRAS DTCEIIMKYNANKDELQHIASPFFREQFYGYFEGMDSEMAWRMIGGSHGYGTRQEMFAHE SIDTIKDWIKEADPYHQAENAEEYWARLDDGFKLISQLDGAENILLVTHGFTIRSLWYRY GDHIPLVPGPKNASITIMTMSEKGEIKIPKWNLMHL >gi|227862128|gb|ACKR01000134.1| GENE 7 6783 - 7475 597 230 aa, chain - ## HITS:1 COG:SP0617 KEGG:ns NR:ns ## COG: SP0617 COG5549 # Protein_GI_number: 15900525 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted Zn-dependent protease # Organism: Streptococcus pneumoniae TIGR4 # 4 226 26 236 240 146 36.0 4e-35 MKRFFKLLRNVLLLALIALGVWTYQNNPNIRIATQDSLATLSYRINELLTNETTISPNNE KKTTNIKTDTDKTENDNSSDNRVWSNPEAKVYIDISNNAQLRSAAVNAMNAWNRTGAFTF HQINDKKDAQIVINTVDNSYTNAAGETATTYNPATGHLLKATVNLNRYYLQNEWYGYSYN RIVNTAEHELGHAIGLNHTNNVSVMYPKGSIYTIQPQDIKTVKKIYHENN >gi|227862128|gb|ACKR01000134.1| GENE 8 7628 - 9934 2238 768 aa, chain + ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 5 762 3 766 774 501 37.0 1e-141 MATAKTEKNEKELEQKHLDNIMGQIKDREKTLKKSIKSAEGEARELNSHFFDDVKLDYDG YSTSMETALSIHQQQQLLSEREHAWQHSAKQLETVERLEKRPYFARVDFKEKNEDLTETI YIGLGSFADKDDHFLIYDWRAPISSIYYDGKLGKVSYNSPEGEITVDMTKKRQFMIEDGK IVNMFDTDESIGDQMLLEVLSEKSSTQMKSIVTTIQREQNKIIRNTKADLLFVQGAAGSG KTSAILQRIAFLLYRYRGNLTSSDVIMFSPNQLFNDYIKNVLPEMGEQNMVQMTYWQFVA RRLPGMEVENLFRQFEDQTADSNISKFKDSVNFFNLLTRYAEHLNKRGVIFKNIYFRDKK KPYFDKEKIKEIYYSFNENYKLANRIDATREELIKMLNRKITPETKKAWVAHAIEGMSQS ELNELYDRPDQEFESEAKEEAFLGRKIVLSALKGVHKRILHNHFLNMRAQYLSFLRAVPK MVDLSKWNIDENDWLAHVEEVKNNFKQHHIAMNDVSAYLYLYDMITGRRTDFEMRYAFID EIQDYTPFQLAYLKYNFPRAKFTMLGDLNQAIFTKDESRSLLKQISGLFDPEKTDVVQLT KSYRSTKELTNFTKQILRQGEKIEAFNRKGPKPIIWGRKNDDEAIDVLVNVLHNNEQNKR TTAVITKDLAAAKFVHEELAKKGENTTLIATANQRLVDGTLVVPSYLAKGLEFDAVVMWD ASKAAYHKLDETQLVYTITSRAMYKLDIIYTGEKSPLLDVDPDTYEEK >gi|227862128|gb|ACKR01000134.1| GENE 9 10368 - 11015 415 215 aa, chain + ## HITS:1 COG:lin1851 KEGG:ns NR:ns ## COG: lin1851 COG0765 # Protein_GI_number: 16800918 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 3 215 1 213 213 243 65.0 2e-64 MSLKYIAEILPALLSGAGMTLSIFFWTLILATPLGILVSLGEKSKFKPLRWLVNFYVWIM RGTPLLLQLIFVFYGLPIIHIVFPRYQAALFAFVLNYAAYFAEIFRGGFQSIDEGQFEAA KVLRLSRWQTMTKIIIPQVIKIVLPSIGNEVINLVKDSSLVYVIGLGDLLRAGNVAMARD VTLVPLVLVGVIYLLLISICAFVLKKLEKYFSYYK >gi|227862128|gb|ACKR01000134.1| GENE 10 11029 - 11649 372 206 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 198 1 210 245 147 38 3e-35 MLEVKNLSKEFNGHRILRDISFTLKDGEIMTIVGPSGAGKTTLLRIIAGLETKDSGEILI DGKPYDSGKVGVVFQDYNLFPNLSVLQNITLAPTLVLKKSKTEAEQDARVLLKRLQISGR EQQYPYELSGGQKQRVAIARALAMKTRILCYDEPTSALDPNLRKEVEKMILSLKKSGLTQ LIITHDLNFAENVADQMLKVRPLSED >gi|227862128|gb|ACKR01000134.1| GENE 11 11653 - 12468 987 271 aa, chain + ## HITS:1 COG:lin1849 KEGG:ns NR:ns ## COG: lin1849 COG0834 # Protein_GI_number: 16800916 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 1 263 1 264 271 244 48.0 2e-64 MKKWILGIVLALTLCLTGCQSVQKEANTQDTWNKIASKKQVVIGLDDSFVPMGFEKKNGQ LTGYDIDLAKAVFKQYGIKVSFQTIDWSMNVTELRNGTIDLLWNGYSITPERQKKVAFSK PYLRNRQVLVVKKDSDISSFKQMKNYELGMQTGSTAEQWYETKQDVLHAKKTVLYDTISN SFLDLNAGRIQGILLDEVYADYYIAHMAKSSEYKVIQNDRVPMDLFAVGMRKGDKTLRQK VNQGLAKLQKNGQLRKLNEKWFGRNNSWLGK >gi|227862128|gb|ACKR01000134.1| GENE 12 12470 - 12919 308 149 aa, chain + ## HITS:1 COG:L9876 KEGG:ns NR:ns ## COG: L9876 COG2153 # Protein_GI_number: 15672965 # Func_class: R General function prediction only # Function: Predicted acyltransferase # Organism: Lactococcus lactis # 9 144 8 145 149 75 33.0 3e-14 MKIDNFTFKKIDEMTAREFYCVERLRNTTFVAEQKITLPDLDDEDLIAVQVYLLNQKQTT ALATCRLFQEDGKWMLGRVAVSKEARGQQLGSKMITAVHKFLRQNKIDAVYCHAQMRVKP FYDSLGYQVVGEPFDEGGVEHVMMKRDLA >gi|227862128|gb|ACKR01000134.1| GENE 13 12916 - 13473 425 185 aa, chain - ## HITS:1 COG:L161059 KEGG:ns NR:ns ## COG: L161059 COG2755 # Protein_GI_number: 15673705 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Lactococcus lactis # 3 181 8 189 191 70 28.0 2e-12 MKKIILFGDSIFNGYRNGQNTNLVTNLFQQALINYAQVENISKSGATTVEGVDYLEQISP EHDLVVVEYGNNDAATAWGISPESYEKNLAQILSAVGKAIVVGLCNPNPESDIFQYYGAE RLDLFNNIAQKVAKAHGAQFVDILPAMRNLKDKSTYYQADGQHLTDQGNEFLVNQIVTVI KKDLA >gi|227862128|gb|ACKR01000134.1| GENE 14 13533 - 14447 783 304 aa, chain + ## HITS:1 COG:L66222 KEGG:ns NR:ns ## COG: L66222 COG1072 # Protein_GI_number: 15673426 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Lactococcus lactis # 3 302 6 304 306 278 50.0 1e-74 MRNYTSFNRNEWAKLAPLDKVNITKEELADIKSLGDVIDLTDVHEIYTSLISYLHLVYQQ KKNAQKAQIKFLHKSFSPAPFIIGISGSVAVGKSTTARLLQLLLSRTYPELKVHLMTTDG FIYPNEKLKRRNLMPRKGFPESYNMTLLSDFLRDVLSGKKDIVYPLYSQELSDIVPGKYG HVKNPDVLIIEGINTLQLPESGQVVTSDFFDFSIYIDAEEDLIEKWYMQRFRKVLKLNKN KPDNFYYKMANGPLEDAIQLAEETWQMVNLVNLREYIAPTKERASLILHKTDGHLIDRIY LRHI >gi|227862128|gb|ACKR01000134.1| GENE 15 14565 - 15140 870 191 aa, chain + ## HITS:1 COG:SPy1821 KEGG:ns NR:ns ## COG: SPy1821 COG0231 # Protein_GI_number: 15675650 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Streptococcus pyogenes M1 GAS # 1 186 1 185 185 191 53.0 1e-48 MVQAINLKKGMIFSQDGKLIKVLKANHHKPGKGNTVMQMDLRDVKSGAVVHKTMRPTEKV DLVEVTKKKAQYLYGEGNTYTFMDTDTYDQYEVSADQLGDDVKFLMPNIMVDMDFTDDNK IIGIELPSTVEMTVKETQPEIKGATVAGGGKPATMETGLVVQVPDFIKNGEKLIIGTENG DYKSRADSQPR >gi|227862128|gb|ACKR01000134.1| GENE 16 15187 - 15588 81 133 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01695 NR:ns ## KEGG: LCRIS_01695 # Name: not_defined # Def: membrane protein # Organism: L.crispatus # Pathway: not_defined # 18 133 80 195 195 213 96.0 2e-54 MVLSIPTLKYGDFRAFFIKSITLSLSKDIYVYDIVGYDDRKDCTIQVDATNNKILGQSTQ VLDYDYEKDASLNLKKTISRQEANEIALKEFSGGTPISWELTDDNNQSIWEVKMIHGKHK HTVKINARTKAVI Prediction of potential genes in microbial genomes Time: Wed May 25 06:36:03 2011 Seq name: gi|227862123|gb|ACKR01000135.1| Lactobacillus crispatus JV-V01 contig00144, whole genome shotgun sequence Length of sequence - 4241 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 4, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 13 - 1335 980 ## COG0675 Transposase and inactivated derivatives - Term 1330 - 1369 -0.9 2 2 Tu 1 . - CDS 1503 - 1754 130 ## LCRIS_01695 membrane protein - Prom 1787 - 1846 5.2 3 3 Tu 1 . - CDS 1881 - 2276 427 ## COG3759 Predicted membrane protein - Prom 2297 - 2356 8.3 4 4 Tu 1 . + CDS 2577 - 4223 1702 ## COG4166 ABC-type oligopeptide transport system, periplasmic component Predicted protein(s) >gi|227862123|gb|ACKR01000135.1| GENE 1 13 - 1335 980 440 aa, chain + ## HITS:1 COG:DR0178 KEGG:ns NR:ns ## COG: DR0178 COG0675 # Protein_GI_number: 15805214 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Deinococcus radiodurans # 12 428 9 374 409 169 29.0 1e-41 MSSLAYHFGVKLRFYPSSKQKKIIKLNYDAQRFVYNSYVGRNRSNYHAKGYLAVRQYQAM PFAFSILNNYETRLAEEVVTNSELLAKPKNIRDTYSFLRVKEIDSLALANAIQNYQKAWN NYRKIGHGIPTFHKKRSDWSYQTNCQYPKQPEAFLDNGTARFIDAKHIKLPKLGVVRIAG FRKLIKERLLNHISTRIGTVTIKKTADEQFYLSMQLGSDIAFVKALPKTQSQLGIDLNLD NFLTDSNGSMVANPRFYRKAKKKLARAQRVLSRRQRRAKKEGRNLRLAKNYQKQRLSVAR LHDKIRRQREDFLQVLSTALIKNHDLVVAEELRSKKLLKNHALSQAISDVGWRSFLNMLA YKADLYGKEFLTIDPKYTTQRCHQCGSIMGQNGYKKLTLKDREWTCQICQMHHIRDWNAA VNILEKGLGKWQNPKIKEAA >gi|227862123|gb|ACKR01000135.1| GENE 2 1503 - 1754 130 83 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01695 NR:ns ## KEGG: LCRIS_01695 # Name: not_defined # Def: membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 79 1 79 195 126 88.0 2e-28 MRKFFIIISSIITGLLIGIIGATIYLNSQSSKVSNFTIRTTNLTAQPKMISYSSNNLPQI NLSQDSAVQKFKSLYTHAVGQLP >gi|227862123|gb|ACKR01000135.1| GENE 3 1881 - 2276 427 131 aa, chain - ## HITS:1 COG:NMB0528 KEGG:ns NR:ns ## COG: NMB0528 COG3759 # Protein_GI_number: 15676435 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Neisseria meningitidis MC58 # 24 121 13 112 123 58 36.0 4e-09 MEIIKYGPYTLFTLIRTILTFIVAIEHIGICFLEMFGKPEQQAKAFDMDINFVKQEAAQV SLANQGIYNGMLGVILIIAFFIFPIPILFNVWKLILSLIVVVAIYGGFTATKKIFLVQML PALLALIFLFI >gi|227862123|gb|ACKR01000135.1| GENE 4 2577 - 4223 1702 548 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 3 548 2 549 549 340 36.0 3e-93 MSKLKGVLAGVVTISLGMLLAACGNGNSSSKSAAQSGTLNLSTTAPLDTIDISKSTGFGQ TGNVFESFYRLGKNGKPTAGLAKTGTVSKDGKTWTFKIRDSKWSNGDPIVAQDFVYSWKR SLNPKTASPYAYLFSGVKNADAIIAGKKSPNALGISAPDKKTVVVKLNRPIAYFRVLMAY PLFGPQNEKVVKKYGNRYATKAQYQVYSGPFKIKGWNGTNDTWSFVKNNDYWDKKVVKLN KIHYQVVKSNNTGYQLYQQGKLDLTPLSSEQVKNLKSNNDFTQYPYSLVRFLLYNFKDKN AVNRKALNNKNIRLALSLSIDRDIVTKKVLGNGSTLPKGFVANDLAANPKTGIDFAKEQA VKNTVDYNPALAKKYWQKGLQEIGQKSLTFDVLSSNDEADSDQLTQYLQSQWTKELKGIK INITNIPDKSTTSRAHQGNFDIYLSHLGGDFNDPMTFMQIPMTGTSYNYGKWSNSEYDNL VKKAGNQDANNPDIRWNDLISAAKIVNSNQAITPIYQQTTAYLQNKRVHGIIHNTAGTQW SYKYAYVD Prediction of potential genes in microbial genomes Time: Wed May 25 06:36:09 2011 Seq name: gi|227862112|gb|ACKR01000136.1| Lactobacillus crispatus JV-V01 contig00145, whole genome shotgun sequence Length of sequence - 8924 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 3, operones - 2 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 6 - 65 9.3 1 1 Op 1 35/0.000 + CDS 91 - 1200 573 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 2 1 Op 2 4/0.000 + CDS 1181 - 1690 394 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Prom 1695 - 1754 4.4 3 1 Op 3 2/0.000 + CDS 1786 - 2241 588 ## COG1846 Transcriptional regulators 4 1 Op 4 . + CDS 2241 - 2765 552 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 2772 - 2826 4.1 - Term 2762 - 2809 7.6 5 2 Op 1 3/0.000 - CDS 2828 - 3445 647 ## COG3212 Predicted membrane protein 6 2 Op 2 2/0.000 - CDS 3470 - 4018 616 ## COG3212 Predicted membrane protein - Prom 4070 - 4129 5.5 7 2 Op 3 40/0.000 - CDS 4138 - 5472 1069 ## COG0642 Signal transduction histidine kinase 8 2 Op 4 3/0.000 - CDS 5459 - 6178 638 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Term 6189 - 6221 2.3 9 2 Op 5 . - CDS 6236 - 7153 1120 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 7197 - 7256 6.7 + Prom 7192 - 7251 5.7 10 3 Tu 1 . + CDS 7275 - 8879 1284 ## COG1132 ABC-type multidrug transport system, ATPase and permease components Predicted protein(s) >gi|227862112|gb|ACKR01000136.1| GENE 1 91 - 1200 573 369 aa, chain + ## HITS:1 COG:SP0137 KEGG:ns NR:ns ## COG: SP0137 COG1132 # Protein_GI_number: 15900076 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 13 362 11 363 538 133 28.0 6e-31 MELLQYFKRLKWEFLFVTFLIVINAGFLTLAGISSANALSAVAKLKAERFFMWVALMGGA YIFYAIVNCLVNVEQTRLAQNVDKLIRNDIAQDLSQTSYSGFHQQTVATYNSWLTNDITT INNFGVEDFMMIIRQISEIVFGMLTLAYFNVSLVVTVIILTIIMGVVPNLFSKILAKRSL EYTHANERLVNSINDVLNGFNTLFLANLPQTIVKKINGASDDVKKHALNYSKTAGITQAI TNGLAFISQVIILGQTGWLILHQLTPVGTISGAQFFASTIFAELSGISFNWQEFKSVKPI IEKFKTIPLKTVDGALPADFKLSNLELDKVSYQYSGQDKPIFENLNLNFKLKNKYILMGD SAEFDFWLT >gi|227862112|gb|ACKR01000136.1| GENE 2 1181 - 1690 394 169 aa, chain + ## HITS:1 COG:Cj1130c KEGG:ns NR:ns ## COG: Cj1130c COG1132 # Protein_GI_number: 15792455 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Campylobacter jejuni # 1 149 394 543 564 118 42.0 7e-27 MISGLLRDYQGKIEISDVEYNQISDKDLHDQITYLQQDPYIFTASLGWNLTLGRQVSKAK ISEVIKECGLEDLIAKLPDGMDTVLADQGKQLSGGQKQRVAFARALLRDTPIYLLDEATS ALDKASSVQLERLILTQKDKTVIMVTHHLRDEVKQLADQVVDLNELKKN >gi|227862112|gb|ACKR01000136.1| GENE 3 1786 - 2241 588 151 aa, chain + ## HITS:1 COG:BS_yybA KEGG:ns NR:ns ## COG: BS_yybA COG1846 # Protein_GI_number: 16081123 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 4 151 3 150 150 148 56.0 3e-36 MKEDILRQIGTIARALDSIANIEFKEMQLNRGQYLYLARIKENPGIISDHLAGMLNVDRT TAARSIKKLEQNQLIRKENDQQNKKIKHLFVTELGDKLAARIEKENAYSNEIVLTGLDQK QRTELAALLQIVEKNASENWHLVKNGGKRKY >gi|227862112|gb|ACKR01000136.1| GENE 4 2241 - 2765 552 174 aa, chain + ## HITS:1 COG:lin0812 KEGG:ns NR:ns ## COG: lin0812 COG0454 # Protein_GI_number: 16799886 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 5 171 2 168 168 141 44.0 5e-34 MKYEIKAITTADVKELQKVSRETFKTTFDPYTAPDDMKRFLEEDYQTEKLIREIENPNSR FYFLMVKGKIAGYLKINVGDAQTEQLRDNALEVERIYLRTNFQHRGLGNVLFDFAEKTAR EEGKDYMWLGVYEKNIPAQYFYKRHGFEKVSQHTFQVGSDPQTDWLLVKKLSKN >gi|227862112|gb|ACKR01000136.1| GENE 5 2828 - 3445 647 205 aa, chain - ## HITS:1 COG:lin0040 KEGG:ns NR:ns ## COG: lin0040 COG3212 # Protein_GI_number: 16799119 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 14 205 11 203 203 69 30.0 3e-12 MKFTKLTSIALLSAALLTGTVACSKQDNSTAKTTTQKSVTSSKVTHNSESAMSKQTQKDN IQIKLSQQEAIDKFHQQFSGKQLKSIELNREGKHYLYEIEGFDSNNEYSVNINAETGQIG HVHSEKLDHDDRNQKALDFKGTISRDDASRIAEEHIKGTSEEWKLEQDEDTGKTYWEVKV KNGHQETEVKINAHTKEVISTEHDD >gi|227862112|gb|ACKR01000136.1| GENE 6 3470 - 4018 616 182 aa, chain - ## HITS:1 COG:lin0040 KEGG:ns NR:ns ## COG: lin0040 COG3212 # Protein_GI_number: 16799119 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 45 182 60 202 203 73 31.0 2e-13 MKTINLKKITITGVALLGLGTAAITATNLATEPNVVQAASSKIKVSQNSAVKKFKAKFKA AKVESISLDKEKGRYVYEIEGFNSTREYEMKINAATGKVISSHSERLDRDERNKKALNFS KTISRSTATKIAQKRVSGKAVEWSLDREGSKNVWEVTISKNGQKSEVKINAITKKVISVE RD >gi|227862112|gb|ACKR01000136.1| GENE 7 4138 - 5472 1069 444 aa, chain - ## HITS:1 COG:L0128 KEGG:ns NR:ns ## COG: L0128 COG0642 # Protein_GI_number: 15672986 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Lactococcus lactis # 1 436 1 432 441 225 34.0 1e-58 MKKADPQTTTQQLTRLFVRLFVAILILVNLAFLIISSAYIYYQAERQSEQVVEAVKENLD SKYDWSAMLDAYLAKQDDDAIILTTPQGKSYYSENAHETFKQINRQNHYQNMVYSNKHIY FLRTENSHDFKIKVALNIDRLFHLIIWLFGTMIVINLIAILLSIPLIRRFAHKWSRPIQV MNNEIQEIQQGASTEQITVPQQPLEIRKLAQSFNNLLAFQKQALQREQQFVSDASHELKT PIAAIRGHVNLIRRHGQAKPEIIPKSLDYIDTESKKMEILVNDLLTLGRIERNTEVVKID LVRIINEVVSEIQSVYPQKIQTDMPQVLKYRINSLDFHNIVHNLVENAAKYSPQDSTIVV KLAKNKGQVSFTVADNGMGIAPENREKIFQRFFREDTSHSNKVKGSGLGLAIVKAEADKY HGQIKVTDNSPQGTIFTVSFPTEK >gi|227862112|gb|ACKR01000136.1| GENE 8 5459 - 6178 638 239 aa, chain - ## HITS:1 COG:L0129 KEGG:ns NR:ns ## COG: L0129 COG0745 # Protein_GI_number: 15672984 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Lactococcus lactis # 8 229 5 224 228 185 47.0 5e-47 MDEKDVKILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWMLP VYDGMTVLRRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVL RRLEKMRQQNDVPDTSLEFGPLKIDLLKHEFYCDTEQIYLTPKEFALITELMRDPEKVKS RDELLDTVWGYDFVGQTNTVDVYIRTIRNKIGNPYKKIIKTMRGLGYCLRKLDDNHEKS >gi|227862112|gb|ACKR01000136.1| GENE 9 6236 - 7153 1120 305 aa, chain - ## HITS:1 COG:SMc04033 KEGG:ns NR:ns ## COG: SMc04033 COG0596 # Protein_GI_number: 15966569 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sinorhizobium meliloti # 12 293 16 290 296 145 32.0 8e-35 MKTGTKIITLDNGYHLWTNTQGEGDIHLLALHGGPGGNHEYWEDTAEQLKKQGLNVQVTM YDQLGSLYSDQPDYSDPEIAKKYLTYEYFLDEVDEVREKLGLDNIYLIGQSWGGLLVQEY AVKYGQHLKGAIISSMVDEIDEYVASVNRRRQEVLPQTEIDFMHECEKNNDYDNQRYQDD VQILNINFVDRKQPSKLYHLKDIGGTAVYNAFQGDNEFVITGKLKDWHFRDQLHKIKVPT LLTFGENETMPISTAKIMQKKIPNSRLVTTPDGGHHHMVDNPDVYYKHLADFIREVENGT FKGEN >gi|227862112|gb|ACKR01000136.1| GENE 10 7275 - 8879 1284 534 aa, chain + ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 3 521 4 523 535 183 26.0 7e-46 MSLKYAKKSQIISYTILAAIKACNIVFVAYMVQIMLNVASSGSHDYLHLIRLAALTALGQ MCFMASNFVYETVKMGIIRDVNMTFKRTNLRYLVDQGEPDIKSGLSLMTNDLKQIETNRI TAQLDMIFQGLSFFGAITFAFYSSWQMTLVFLIATLAPALVQMITSPIITRKSKIWATTN ANYTQNVSDSLNGAQATKLYNVRTNIVTRAAGAAQAMENALRNMTLTQAWALELIYSAAE LFCFIVPCTIGGIMMLQGNLKVGTLVMMVDLALNFITPIVTLFNEFNQVKSTVPMWEKTQ RALHHVLKDDKQKIDHFDGMEVEQLSYVTGSDHKRIFENVNLTVKPGEKVLLMAPSGWGK TTLLRLLLGLRKPKDGKILINGTDVTGNWDAAHNYFSYVNQKPFMFDDTLRFNITLGRKV SDEHLKEVIHEAGLDELVKEQGLDKAVGENGSGLSGGQIQRVEIARALLSDRPILLADEA TSALDPNLSLGIHKTLLKNPRIAVIEVAHKISPEEKAMFDVIIHLDTHTIETKM Prediction of potential genes in microbial genomes Time: Wed May 25 06:36:11 2011 Seq name: gi|227862107|gb|ACKR01000137.1| Lactobacillus crispatus JV-V01 contig00146, whole genome shotgun sequence Length of sequence - 3373 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 71 - 805 965 ## COG2461 Uncharacterized conserved protein + Term 826 - 855 2.1 - Term 814 - 843 2.1 2 2 Op 1 . - CDS 849 - 1145 193 ## LBA1655 hypothetical protein 3 2 Op 2 . - CDS 1213 - 2145 611 ## LBA1654 putative surface protein 4 2 Op 3 . - CDS 2120 - 3085 904 ## LBA1654 putative surface protein - Prom 3213 - 3272 6.0 Predicted protein(s) >gi|227862107|gb|ACKR01000137.1| GENE 1 71 - 805 965 244 aa, chain + ## HITS:1 COG:SP1472_2 KEGG:ns NR:ns ## COG: SP1472_2 COG2461 # Protein_GI_number: 15901322 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 18 221 4 207 227 103 34.0 4e-22 MAEPKWLKDMNADEYLKEDFDAKGKSKYTVEGIDKNDPDWLDKAAKKVHAAEGDDYVKLD AGLLTVNQLNWMLRNTIGKMTFVDDNNQFLWYNRPTDPNKKMLATPDQVGDTMRAVHPDV RDVIPNVKKVVHALRTKEAGHDVVYMPIPTGNLKKLVVDYYKRVEDDQGNYAGIYEWVKD LYPLVKYFCETTGQKLVVDDDATTGATYRRNSDPDAATGASTKAAEVKEEKHEEPDTTTG ASQH >gi|227862107|gb|ACKR01000137.1| GENE 2 849 - 1145 193 98 aa, chain - ## HITS:1 COG:no KEGG:LBA1655 NR:ns ## KEGG: LBA1655 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 25 98 20 93 96 63 44.0 2e-09 MLKNRLKIFQQILPTKATNTPKYQLPINYYDPEGSMVGTYSGINLAANETITHHQLKRFI NIHLPENYEVFPYFAYPKENITCENLPDEIMITIRLSN >gi|227862107|gb|ACKR01000137.1| GENE 3 1213 - 2145 611 310 aa, chain - ## HITS:1 COG:no KEGG:LBA1654 NR:ns ## KEGG: LBA1654 # Name: pspC # Def: putative surface protein # Organism: L.acidophilus # Pathway: not_defined # 8 290 345 655 685 220 53.0 5e-56 MLISRRVNSWIDVSNAIKDGSKDPIYVTIDAKYLSGNNKHEIAIKGIPADAETPIIILNV TNVQNGDLTVSTRLVLDYSDQTSINGVSEKPSQLNKLLWNFGTDVKNLTIEGDFHLGSIL ATNAHITANKNVDGNIIGNKITIKGETHRWDLTPPLVEVETPPEDPKDPPKDPEKPENPP KDPEPTPEPEPELKPEPTPDPEEESTPPLPEEVIPPTDNENSSDFKEEDTAPLPESVVEK QVKKNLPSPSTTEENIAPHAATIPTSTITEKETVLPQTGESQDKLMTIGLITTSVASLFA VLGTVIKKRN >gi|227862107|gb|ACKR01000137.1| GENE 4 2120 - 3085 904 321 aa, chain - ## HITS:1 COG:no KEGG:LBA1654 NR:ns ## KEGG: LBA1654 # Name: pspC # Def: putative surface protein # Organism: L.acidophilus # Pathway: not_defined # 1 317 1 341 685 230 47.0 7e-59 MFKTKKTQFAIRKLAQGASAVLLCFGILGGASAPIVPAATTDDPTKTVTESTINSENTSF NIETTTNASDKFASISKNGGGTTVVPNSAEPVSPDQSITENDNQQEKTTVENSTEISEPV KDINKFDNDANVDKDETITVKKPTINVDTEKVEQGDETEKSKLEEIKKYIEDVAAKHPLG IAGIFHLFGNEIDGSAHIAGNVATDKLSAGNFGTIQDATSNLTTCDIHYIGSIDHLNQID GENKLVIFGPDVEYKSYENGSSIQVKINGNWQKVGIPYNKTIRADQILDIQGELDKLSDK SDEWAKQTQTEGVIADFKEGK Prediction of potential genes in microbial genomes Time: Wed May 25 06:36:24 2011 Seq name: gi|227862105|gb|ACKR01000138.1| Lactobacillus crispatus JV-V01 contig00148, whole genome shotgun sequence Length of sequence - 214 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:36:28 2011 Seq name: gi|227862090|gb|ACKR01000139.1| Lactobacillus crispatus JV-V01 contig00149, whole genome shotgun sequence Length of sequence - 10052 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 8, operones - 4 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 12 - 53 -0.6 1 1 Tu 1 . - CDS 82 - 951 405 ## LCRIS_01919 transcriptional regulator - Prom 1054 - 1113 4.8 - Term 1086 - 1124 3.0 2 2 Tu 1 . - CDS 1145 - 1873 600 ## COG0789 Predicted transcriptional regulators - Prom 2004 - 2063 5.8 + Prom 1961 - 2020 7.5 3 3 Op 1 4/0.000 + CDS 2054 - 2578 585 ## COG2252 Permeases 4 3 Op 2 . + CDS 2615 - 3364 792 ## COG2252 Permeases + Term 3418 - 3450 2.5 + Prom 3451 - 3510 3.7 5 4 Op 1 . + CDS 3531 - 3797 270 ## LCRIS_01998 DNA-damage-inducible protein J 6 4 Op 2 . + CDS 3787 - 4119 184 ## LCRIS_01999 cytosolic protein + Term 4149 - 4184 5.3 + Prom 4171 - 4230 5.8 7 5 Op 1 . + CDS 4302 - 4745 641 ## COG0300 Short-chain dehydrogenases of various substrate specificities 8 5 Op 2 . + CDS 4708 - 4902 160 ## COG0300 Short-chain dehydrogenases of various substrate specificities + Prom 5029 - 5088 1.6 9 6 Op 1 8/0.000 + CDS 5109 - 5705 422 ## COG2207 AraC-type DNA-binding domain-containing proteins 10 6 Op 2 . + CDS 5709 - 6086 291 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 6087 - 6128 0.9 + Prom 6090 - 6149 4.9 11 6 Op 3 . + CDS 6175 - 7428 838 ## COG1373 Predicted ATPase (AAA+ superfamily) + Term 7435 - 7474 5.2 - Term 7423 - 7462 6.4 12 7 Tu 1 . - CDS 7466 - 8239 873 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 8266 - 8325 6.6 + Prom 8228 - 8287 4.7 13 8 Tu 1 . + CDS 8393 - 9703 1537 ## COG2252 Permeases + Term 9717 - 9753 4.3 Predicted protein(s) >gi|227862090|gb|ACKR01000139.1| GENE 1 82 - 951 405 289 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01919 NR:ns ## KEGG: LCRIS_01919 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 7 285 11 289 292 215 43.0 2e-54 MKETYGRKLRKATKISSSKAAEAVGISRSKLERWERGEAGLDIEKVFKLLEVIHVQKIDF FNNNISNYLKNITLEVSKAYESNDINYLKTQSKKLLSEVENDSFDKRTFLKAAIYCNAYY DLTGVDIFTDNYKKRLSMYFSKILSGDEVWYYDDVYFFGNTQNLISPRTIYSLSFSLVFY FKNNNDLEMKFSTAILNTLINAEYILIKKDLKKAKRLDAIISGLDITDRFAFEKIRYKYM HFMLNFLETNDDRNLRLMWAALELQGLNTLKDGFETAFKQIKQIYSKKS >gi|227862090|gb|ACKR01000139.1| GENE 2 1145 - 1873 600 242 aa, chain - ## HITS:1 COG:SPy1863 KEGG:ns NR:ns ## COG: SPy1863 COG0789 # Protein_GI_number: 15675682 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 4 242 5 238 245 151 32.0 1e-36 MSEYTIGDLAKKLNITTRTIRYYDQKGLVKPSRVSESGYRLYSDEQVKQLKLIIFLKELG FSLKDIQKILEDKNGDKLIDLLLEDQLKRNKAETQKLEEQNKKIIQLQKVLSKPNNIAEV TDITKIMNNETRYKEVTRSMWKLSAVEITVELVGMAFIAYCIINKMNTAAYISVAILVVS LIAMSFVLLKNYYQKVAYICPNCDYKFVPELKSFMFAAHTPHTRKLRCPNCHKKSYCLET VR >gi|227862090|gb|ACKR01000139.1| GENE 3 2054 - 2578 585 174 aa, chain + ## HITS:1 COG:PA4719 KEGG:ns NR:ns ## COG: PA4719 COG2252 # Protein_GI_number: 15599913 # Func_class: R General function prediction only # Function: Permeases # Organism: Pseudomonas aeruginosa # 4 172 2 170 431 169 54.0 3e-42 MNAISNFFHLKENNTSFKTELLAGLTTFVSMSYILFVNPNVLGASGMDKGALFTVTALSA AFTCIVMGLIANYPIASAPTLGLNAFFTYTVCLGMKVKWQTALAAVFVASILFILLTVFK VREMIIDAIPADIKYAISAGIGLFIAFIGLQGGKLIQNSDSTLVTIGSLNNPTV >gi|227862090|gb|ACKR01000139.1| GENE 4 2615 - 3364 792 249 aa, chain + ## HITS:1 COG:BS_yebB KEGG:ns NR:ns ## COG: BS_yebB COG2252 # Protein_GI_number: 16077704 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus subtilis # 1 246 194 439 440 231 54.0 1e-60 MIARVPGAIFIGMIAAAVFGIVTGQIPMPKGVISSVPSIAPTFGQAVFHIGDINTVQMWI VVFTFLLVTFFDTTGTLIGLVQQAGLMKDNKMPRAGEALAADSSGMLVGSVLGTSPVGAF VESSAGIAVGGRTGLTAVWVGIFFLISTIFSPILSVFTTQVTAPALIIVGVLMAENLAHV HWTNLEIAIPCFLIALGMPLTYSISDGLGWGLIVYPVSMIAAKRFKEITPMMWILFIVFV IYFVVLNVK >gi|227862090|gb|ACKR01000139.1| GENE 5 3531 - 3797 270 88 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01998 NR:ns ## KEGG: LCRIS_01998 # Name: not_defined # Def: DNA-damage-inducible protein J # Organism: L.crispatus # Pathway: not_defined # 1 88 1 88 88 147 100.0 1e-34 MKSYKKIQANVDSSLALQAEGIFQDIGLNTTTAINVFLKKVVATGGIPFELKETPEQKAS RELIQSISKIPHKEAKTKKEIEDWLDED >gi|227862090|gb|ACKR01000139.1| GENE 6 3787 - 4119 184 110 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01999 NR:ns ## KEGG: LCRIS_01999 # Name: not_defined # Def: cytosolic protein # Organism: L.crispatus # Pathway: not_defined # 1 110 1 110 110 189 99.0 3e-47 MRTNDIVDIYVAYIDKPGGKNRPVLIIKLLNSKAWLLKITSKYKEKSENIRKHYFPIFDW KKYNLDKPSYIDTKNYLIVTISDLNIEKYRGHFSIADLRKLKDFIDENSN >gi|227862090|gb|ACKR01000139.1| GENE 7 4302 - 4745 641 147 aa, chain + ## HITS:1 COG:AGl1280 KEGG:ns NR:ns ## COG: AGl1280 COG0300 # Protein_GI_number: 15890762 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 6 134 36 164 291 93 36.0 1e-19 MTTQEGKTALITGSYGGLGTQFVNIHASHGGDLILVGRNAKKLADQQKEARRKYNVTAHI IDVDLSQPDAAQKIYDTCKKNGWTIDYLINNAGFGGQGEFIKRSMEQDMSMIAVNIETPT RLTKLFLPDFVKRGRYAWPTSSRLLRY >gi|227862090|gb|ACKR01000139.1| GENE 8 4708 - 4902 160 64 aa, chain + ## HITS:1 COG:all3753 KEGG:ns NR:ns ## COG: all3753 COG0300 # Protein_GI_number: 17231245 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Nostoc sp. PCC 7120 # 2 57 149 204 263 65 53.0 3e-11 MPGPLQAVYYATKAYVTSWSNALWREVQGTGVTVSCLMPSAMQTGFISRGDLSSTQLFAH AVSP >gi|227862090|gb|ACKR01000139.1| GENE 9 5109 - 5705 422 198 aa, chain + ## HITS:1 COG:L143624 KEGG:ns NR:ns ## COG: L143624 COG2207 # Protein_GI_number: 15673292 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Lactococcus lactis # 39 198 40 198 324 68 29.0 6e-12 MNHFILDGRYEDLLSFNVEEALKKANIPEDCFKKLHPSMSEQQYYNFMAAIGDQISDPFT PIEIATTNPIESFSPPIFAAYSSRNGDIFIKRLAKYKKLIGPLSFKIDEDSKQLSITLTP SNQQYSLPSFLVLSEFAFLVGLLRKTTKEAISPLKITMTSPVNDEQVINFFGCKIESGKR NTITFAKKDLQVNFISYN >gi|227862090|gb|ACKR01000139.1| GENE 10 5709 - 6086 291 125 aa, chain + ## HITS:1 COG:L143624 KEGG:ns NR:ns ## COG: L143624 COG2207 # Protein_GI_number: 15673292 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Lactococcus lactis # 1 123 201 323 324 96 38.0 1e-20 MWDYFKPELTKRLSELSVDDSTSARVRSILTELLPNGEFTIDDVAKKLGYSKQTLQRKLS SENPTFQKQLNSTREVLALNYLQNTDMTTSDIAYLLGYQEFNSFLRAFSIWKGISISEYR EKMNK >gi|227862090|gb|ACKR01000139.1| GENE 11 6175 - 7428 838 417 aa, chain + ## HITS:1 COG:lin0154 KEGG:ns NR:ns ## COG: lin0154 COG1373 # Protein_GI_number: 16799231 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Listeria innocua # 18 416 1 398 400 413 54.0 1e-115 MKIAKNLLYEGNNMQLNLINRPQYLNQLLQFQNTEFIKVLTGVRRSGKSYILMLYREYLL KHNINEHQIIYISFEDFDNIDLYEPKKLYSYLKERIISDQRMYILLDEIQYVSDWQKVVN SLRLNPLLDITITGSNSNLLSGELATLLSGRYVEIHVYPLSFKEMLDFKHISEPSERQID NLYDEYIKYGGFPAVVLAKEELKQTILSGIYNTIIVNDIGYKNGLREPELVALVAKYLAD SIGQLINPNKIVNTLKSANFDISYNAVQRYLKYFEEAYLFYKSSRYDIRGRKILSTQGKY YIVDTGLRTQALGERNNDRGSVLENIVYVELLRRGYTVQIGKLDNKEIDFIVFKVNDKQY IQVTYQLPENSTRETDNLLQIPNNYKKIVITGRYENEEMISGIPIINIKDWLLSSKN >gi|227862090|gb|ACKR01000139.1| GENE 12 7466 - 8239 873 257 aa, chain - ## HITS:1 COG:BH2659 KEGG:ns NR:ns ## COG: BH2659 COG0561 # Protein_GI_number: 15615222 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Bacillus halodurans # 5 248 4 248 257 139 31.0 6e-33 MSKPKIIFFDIDGTLIEKKKSITPKMLETLHALQDNGIMICIASGRPPVQLPKLGVDFDA YLTFNGSYCYNDQDIVFDNPLRQGDVLHMIQNAQKINRPLAVATKTRIAANGVDEDLKEY FAIGGTDLRVAPDFDVVVDQDTVYQIMVGCREKDYDGLVANTQNAKVTAWWDRAADIIPA TGSKGVAIEKVLDYYQIPVSEAIAFGDGGNDIEMLKTVGHGVAMGNATDDVKEIADDICG SVQDDGIFTYCKKHNLI >gi|227862090|gb|ACKR01000139.1| GENE 13 8393 - 9703 1537 436 aa, chain + ## HITS:1 COG:BS_yebB KEGG:ns NR:ns ## COG: BS_yebB COG2252 # Protein_GI_number: 16077704 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus subtilis # 4 432 1 437 440 374 51.0 1e-103 MQTLEKVFHLQDAHTTVKRELIAALTTFVSLSYILFVNPNILHAAGIPKGAAFTVTALAT AVGCFLMGFIANYPIALAPTLGSGAFFAYNVCVGMHISWETALAAVLVASVLFILITVFK LRELVVNAIPQDMKYAISAGIGLFIAFIGLKNGQLIVNSDSTLVTLGKFSTPAVWITLFG LILTVVLMALNVPGSIFIGMIVTAIFGMIIGQIPLPHNIVSGAPSIAPTFGQAVFHIKDI NTAQLWMVVLTFLLVTFFDTAGTLIGMTEQAGMVDKDGKIPRIGRAFLADSTAMVEGAVF GTAPLGTSVESSAGIAMGGRTGLTAIFVGIFFIISMIFSPLLQVIPTTVTAPALIIVGVL MASNLKKIDWEKFEIAFPAFLTVVGMPLTYSISDGLALGLIAYPITMIASKRYKEVSPMM YILFVVFIIFFLVTNL Prediction of potential genes in microbial genomes Time: Wed May 25 06:36:38 2011 Seq name: gi|227862083|gb|ACKR01000140.1| Lactobacillus crispatus JV-V01 contig00150, whole genome shotgun sequence Length of sequence - 4545 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 3, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 736 705 ## LJ0255 hypothetical protein + Term 766 - 825 6.5 - Term 758 - 809 13.2 2 2 Op 1 . - CDS 920 - 2488 1131 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 3 2 Op 2 . - CDS 2590 - 3399 626 ## LCRIS_00641 transcriptional regulator, XRE family 4 2 Op 3 . - CDS 3408 - 3923 359 ## gi|227878318|ref|ZP_03996276.1| conserved hypothetical protein 5 2 Op 4 . - CDS 3937 - 4101 78 ## gi|227878319|ref|ZP_03996277.1| hypothetical protein HMPREF0506_1278 - Prom 4274 - 4333 3.2 - Term 4115 - 4154 -0.9 6 3 Tu 1 . - CDS 4338 - 4544 255 ## gi|256843854|ref|ZP_05549341.1| predicted protein Predicted protein(s) >gi|227862083|gb|ACKR01000140.1| GENE 1 2 - 736 705 244 aa, chain + ## HITS:1 COG:no KEGG:LJ0255 NR:ns ## KEGG: LJ0255 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 6 243 6 236 237 141 39.0 2e-32 RKMKIKKVLLTTSLLTISLITLSGCSFHLFTNKNSGPTIKRTLSSKKFNSLKVASDITDV ELHASNQYKVIYHGLKRFKPSVNVKNGQLKITQTSNGVSYNIKEGNTVAIYLPAKELQNI NINLSDGDIDADGKVQAKNVKLHSDDGDVNFDDLRISSGKITSDDGDISVSNLLTRKGAT VESDDGDIRIRKSNASGYRLTSDDGDVTFKGDTSDNDDGGSYYKNTKSSNLLSAHSDDGD VNVN >gi|227862083|gb|ACKR01000140.1| GENE 2 920 - 2488 1131 522 aa, chain - ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 74 521 81 534 535 155 26.0 3e-37 MKKFIDLKWFSLSIILSCLSGLSLSFSTWSYSEIFALITGKSIPNTVRMIIVITVLQILL VIVEYLNNRVINRNVALFNQEVREYLMQTDFVKTGEKEISNRISFINNDLNLIEEKYFRQ LFSLVSTVVKIVGIVTIALINSVVLTLVFVAFASLSSLIPSLFSKKTANQSSNWSKSTGS YVTFMSDLLKNINTVLNYNVLSLFVKKGSKVIKNSVENKRERDDTIAKSDFYVDLLAYSL DFLPIGIGIIMVIQGHIALASFVAVQYSSAWIVNSFFSINSIRNQIAATKPMTAKLLSFK PLTTKQDEAPVKFKQLNMYNVTFGYQADSPVLNNVSLCVNKGDKILLTGKSGEGKSTLLK VLMGKLSPQKGRVLVNDQAVETQIFSEVQQSSQIFNVTLRFNLTLGKQFDQKQIVAAAQQ AGLTNYLQKHGLDTVIEENGHNLSGGERKRIELARAFLFQREILVVDEGTASLDPQTAEQ IHNVFLNSPLTVIEIDHHISSTTMKKFTHHFDLENGKLVNIF >gi|227862083|gb|ACKR01000140.1| GENE 3 2590 - 3399 626 269 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00641 NR:ns ## KEGG: LCRIS_00641 # Name: not_defined # Def: transcriptional regulator, XRE family # Organism: L.crispatus # Pathway: not_defined # 1 269 1 269 269 456 94.0 1e-127 MEINTALKKARQSRGLTQEQFVAGILSPAHYSKIERGLHEISAKDLMAILQKNKISFDEF FKQNSVAQADDENNLGDQLQTAYYNQDFNQVRKLVTEIQQLPHHDLLKIKAKLILTLLEG KRKFDVKDKNIVLQRLFAGDNWLQDKFSLDLLANFGTSIFTHDDFAFFFQKIFTTYNDKM SEQTEKMQTTIATICVNYLYTCAENKFVKDNKEPIYLLGQLSQTPSLVLYKIIGHFYQCY FAGDTEQVLAIKKLIKASNLENILSILPE >gi|227862083|gb|ACKR01000140.1| GENE 4 3408 - 3923 359 171 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878318|ref|ZP_03996276.1| ## NR: gi|227878318|ref|ZP_03996276.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 171 1 171 171 310 100.0 1e-83 MKKKATIITVVVVVVLAVGGWLFYRNQQTIPEQFANKNLTTYDPHQTDSVMENHLGMLVN IALGKNSGQIDASSPVFKTDASGTYKYIKPNTAAAKAIYKVYGHNSYDPKDYNNKINSEK LGRVRVTMEGKNSWTLHSKKLTLKFHKTSDGHWATSDGTIWFVSKRDRKLK >gi|227862083|gb|ACKR01000140.1| GENE 5 3937 - 4101 78 54 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878319|ref|ZP_03996277.1| ## NR: gi|227878319|ref|ZP_03996277.1| hypothetical protein HMPREF0506_1278 [Lactobacillus crispatus JV-V01] # 1 54 1 54 54 96 100.0 4e-19 MEIPYNDGTYNGYLQRERMYEEYSNGKVRWVVYYGGTVRLVSHGLITFQKKADR >gi|227862083|gb|ACKR01000140.1| GENE 6 4338 - 4544 255 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843854|ref|ZP_05549341.1| ## NR: gi|256843854|ref|ZP_05549341.1| predicted protein [Lactobacillus crispatus 125-2-CHN] # 1 68 70 137 137 130 100.0 2e-29 RGNEVFRGYLEKMYTVPMGHNPTGIMYGGYLYNTKLKSYPIPTLASKKKMMTNFVVNDNE QLGNENKQ Prediction of potential genes in microbial genomes Time: Wed May 25 06:37:09 2011 Seq name: gi|227862057|gb|ACKR01000141.1| Lactobacillus crispatus JV-V01 contig00151, whole genome shotgun sequence Length of sequence - 24226 bp Number of predicted genes - 24, with homology - 23 Number of transcription units - 16, operones - 6 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 335 - 1180 541 ## LGAS_1061 XRE family transcriptional regulator - Prom 1265 - 1324 12.3 + Prom 1266 - 1325 11.3 2 2 Op 1 . + CDS 1369 - 1746 432 ## COG4633 Uncharacterized protein conserved in bacteria 3 2 Op 2 2/1.000 + CDS 1746 - 2033 355 ## COG4633 Uncharacterized protein conserved in bacteria 4 2 Op 3 . + CDS 2033 - 3973 2262 ## COG2217 Cation transport ATPase + Term 3985 - 4018 1.4 5 3 Tu 1 . - CDS 3965 - 4609 553 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - Prom 4646 - 4705 5.6 + Prom 4418 - 4477 4.4 6 4 Tu 1 . + CDS 4702 - 5256 750 ## LCRIS_02012 hypothetical protein + Term 5257 - 5303 5.8 + Prom 5262 - 5321 6.4 7 5 Tu 1 . + CDS 5382 - 6746 1172 ## COG0477 Permeases of the major facilitator superfamily + Term 6771 - 6809 3.4 - Term 6759 - 6797 7.2 8 6 Op 1 . - CDS 6803 - 6955 193 ## 9 6 Op 2 . - CDS 7016 - 8125 1029 ## LCRIS_02015 hypothetical protein - Prom 8153 - 8212 5.3 - Term 8184 - 8216 2.5 10 7 Tu 1 . - CDS 8259 - 9389 1271 ## lhv_0082 surface layer protein - Prom 9415 - 9474 4.9 11 8 Tu 1 . - CDS 9506 - 10657 1143 ## LCRIS_00012 S-layer protein - Prom 10687 - 10746 4.5 - Term 10714 - 10754 9.4 12 9 Op 1 . - CDS 10776 - 11711 1029 ## LCRIS_00011 bacteriocin helveticin-J 13 9 Op 2 . - CDS 11741 - 12058 247 ## lhv_0085 helveticin ORF 2 - Prom 12281 - 12340 8.8 + Prom 12240 - 12299 10.8 14 10 Op 1 . + CDS 12418 - 12744 241 ## LCRIS_00245 transcriptional regulator 15 10 Op 2 . + CDS 12722 - 13147 348 ## lhv_0083 putative prophage repressor - Term 13216 - 13249 3.1 16 11 Tu 1 . - CDS 13256 - 14815 1545 ## COG0038 Chloride channel protein EriC - Prom 14848 - 14907 8.6 - Term 14852 - 14901 9.1 17 12 Tu 1 . - CDS 14918 - 16321 1704 ## COG0362 6-phosphogluconate dehydrogenase - Prom 16379 - 16438 5.6 - Term 16375 - 16406 2.5 18 13 Tu 1 . - CDS 16623 - 16892 147 ## LCRIS_02018 hypothetical protein - Prom 16953 - 17012 4.4 - Term 17050 - 17085 0.4 19 14 Tu 1 . - CDS 17106 - 18914 2519 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] - Prom 19147 - 19206 8.2 - Term 19230 - 19269 3.2 20 15 Op 1 11/0.000 - CDS 19283 - 21181 1940 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division 21 15 Op 2 10/0.000 - CDS 21189 - 22574 1310 ## COG0486 Predicted GTPase - Prom 22599 - 22658 8.0 - Term 22590 - 22640 2.5 22 16 Op 1 22/0.000 - CDS 22685 - 23560 827 ## COG0706 Preprotein translocase subunit YidC 23 16 Op 2 . - CDS 23562 - 23930 244 ## COG0594 RNase P protein component - Term 23952 - 23980 -0.1 24 16 Op 3 . - CDS 23982 - 24140 233 ## PROTEIN SUPPORTED gi|58338218|ref|YP_194803.1| 50S ribosomal protein L34 - Prom 24166 - 24225 2.6 Predicted protein(s) >gi|227862057|gb|ACKR01000141.1| GENE 1 335 - 1180 541 281 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1061 NR:ns ## KEGG: LGAS_1061 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: L.gasseri # Pathway: not_defined # 1 271 1 264 272 129 31.0 1e-28 MTIGEALKQTRKSMKLSQTEMAGDVLSTSYYSKIERGLNDIQTQDLIDLLKQHGLQASIF LERIENEDSENDLAHKNLIWQKQLEDAYYHQQIERLEDLKIEIGKYKNQSQNIFNLYALV VFSIASLKKQIDQISENIKRQVRQIVFDSDEWSESTLQIFAMTMMIYAPEDMDFLINSIF RTYRHNVSNLSGQLQEIMSAIAINYLANVYVQRRKIDLNLIYDFISKLPEIPRNAFAKIV ANYYHYCFDGKNEEADQIIEFMKSNGMSHLIKNFIVENCHL >gi|227862057|gb|ACKR01000141.1| GENE 2 1369 - 1746 432 125 aa, chain + ## HITS:1 COG:SP0728 KEGG:ns NR:ns ## COG: SP0728 COG4633 # Protein_GI_number: 15900625 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 7 125 5 123 123 110 42.0 8e-25 MDVTKIIILVVAIALIGFILWWFFGKHDEAIGKASVNQGTQEANIVVNGGYSPSTIVLKQ GVPAKVNFDMQDSTACLSHVVFEQLGVNKDLTKQKITTINIPTDKKGTYNFACGMDMFHG KIEVK >gi|227862057|gb|ACKR01000141.1| GENE 3 1746 - 2033 355 95 aa, chain + ## HITS:1 COG:SP0728 KEGG:ns NR:ns ## COG: SP0728 COG4633 # Protein_GI_number: 15900625 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 20 95 48 123 123 65 38.0 2e-11 MSIFSKNQIKKVVVNADNHGYKPDVVTFKQGKPAQLKFIPSDNMGCMNEIVSKDLGFDHK LDGQKEVVVDIPTDHAGTYNYACGMDMFHGKIVVK >gi|227862057|gb|ACKR01000141.1| GENE 4 2033 - 3973 2262 646 aa, chain + ## HITS:1 COG:SP0729 KEGG:ns NR:ns ## COG: SP0729 COG2217 # Protein_GI_number: 15900626 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 3 637 18 659 660 721 61.0 0 MKLSNIQRFWISFVLSIPMLIQMIAMPFHWMMPGYNWIALITTTIIMAISAAPYCKSAWG AFKKHNANMNTLVAVGTAVAYFYSIYAMFTGREVYFESAAYVTVFVLLGDAMEEKMHSNA SNALAKLVDLQAKDAAVLRYGEFVKVPLEQVKPGDTIRVKPGEKIPVDGVITDGSTTIDE SMVTGESMPVTKKKGDNVVGSTINTNGTFTFKATKVGSDTMLAQIVDLVKKAQTSHAPIQ NLTDKISNIFVPVVLIIAIITFVIWYVFLGATLVNAMLFAVSVVVIACPCALGLATPTAL MVGTARSAKMGVLIKNGEVLEEVSDIDTVVFDKTGTITVGKPQVTNVVGDKNKVLTIAAS LEENSEHPLATAVVKAAKEAKTEIKSIQNFAAIEGRGVKANYGNQEAFVGSDRLLEDISI SQEMKDQALQLQKEAKTVVYVGLGNDIIGLIAIQDVPKASSKQAIAELKKRGLKTVMLTG DNQNVAEAIGREVGIDQVIAGVLPTEKAAEIKKLQDEGNKVAFVGDGINDAPALSTADVG IAMGSGTDIAIESGGIVLVQNDLMGVVRALEISKKTFNRIKLNLFWALIYNTIGIPIAAG LFMAFGVQLSPELAGLAMAFSSVSVVTSSLLLNKTKIAGETAQVSK >gi|227862057|gb|ACKR01000141.1| GENE 5 3965 - 4609 553 214 aa, chain - ## HITS:1 COG:DR2362 KEGG:ns NR:ns ## COG: DR2362 COG0664 # Protein_GI_number: 15807353 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Deinococcus radiodurans # 9 204 10 209 231 89 30.0 6e-18 MQHSPMACIRKAAIFKNLPNEMLEKLVPISTHQEYFPKGSIIRQPGDGKNGMLFMDQGSA KIYNLNEDGKETVLGVLNQGDANGQQNLFQEHAQENFVQALQDTYVCSIERRDFQKLLKK TPDLALNLLNNFGEQLVTIETNSIRRNSMDAQERLMAYLQDLAQKQGSKNVELKLKKKDL ASYLGITAETLSRKLKNLQKENRIKISGRRIILL >gi|227862057|gb|ACKR01000141.1| GENE 6 4702 - 5256 750 184 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_02012 NR:ns ## KEGG: LCRIS_02012 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 184 1 184 184 349 100.0 2e-95 MTKYIAHIEPLNAEKIGTKAHGTATFEEKGDQLHIHVEMFDTPANIEHWEHFHGFPNGQK AHVPTAAQDVNHDGFIDLPETEPVSGTTMVPLDDAPENMNIPHDGYPVADSNGHYEYEID VSLTKLQKKFKAAFGSDKLQLDKRVVYVHGVPADLELPDTVGGCVMSYDAHTTLPIAAGE IEKA >gi|227862057|gb|ACKR01000141.1| GENE 7 5382 - 6746 1172 454 aa, chain + ## HITS:1 COG:YPO2459 KEGG:ns NR:ns ## COG: YPO2459 COG0477 # Protein_GI_number: 16122680 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Yersinia pestis # 27 447 15 428 452 185 31.0 1e-46 MENNEKIIQEKKREKFIKTKKNYKRAPLMSVHLRVMMAVILGQIACGYSLGISGTALSNA AKYINISDFWTGLIGAGALIGLAGSLLVGRLSDKIGRRKLLMWNMYILAAFSLLHLITAN FSLTFILRIGIGLMIAVDYTVGNALLTEWLPKGEDSKRQSHLLIYWTIGFILSYLAGSFI TGFDSYTWQIILATSAVPALVTAIFRSLFPLPASPGWLASKGKIKTANKVIRKHMGRKWR LPARFMKRNKKKTPRNISWAILFSKQYLRRTLVGGIFYACQAFSFFGISIFLPILLQSMN ITSGNISGIIYNGGMFIGVLIGTWIFNKVSRRFYLISNFLISGLLIGILAIVPNLNSILK LGIFTLFAIILSAGLILDYPYPTELFDLKVRATGVGTCITISRIGAAAGTFLLPVLTNVG GASLAMLVCAIVLLFAFIVCLIWAPETSPQFMKK >gi|227862057|gb|ACKR01000141.1| GENE 8 6803 - 6955 193 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGLTFDNPNNLQKMLDRFATVPDPKKTPKHKDPEELLNKDSKDKKKKDKK >gi|227862057|gb|ACKR01000141.1| GENE 9 7016 - 8125 1029 369 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_02015 NR:ns ## KEGG: LCRIS_02015 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 369 1 369 369 682 99.0 0 MNKLVQITLKADQEKYNLGGDASITVVDANSYYIGRIITQHHGWITFESVDQGGNLGGIV FIKEDQVAKIEDDTPNLRYYMITQVKDSFNLEQLNKTVLAWDFTNLHDLLINVADAQPFT TFEVNTGATYTGLITQLDQQEMRILERNELTLEHYATVIPLDDIVCVDTNAIDNRLFTQY LRQSQKQEFTNDLDLVEIYFDYTFDDQYGSFAIGKVLKYDDDNLVFESINELGQVESIAV IARSHITHITEDSERLLFFNFLVQWQKNNGSFDPDRLERSVKLRDEIQSPAEIIDNWPED QIVKISDSIYHYPDRLGLIEDRSDSGFDLKIVTEYGLGDTSVHDYSDLISVDLAGSEMIK MQQFIDNEG >gi|227862057|gb|ACKR01000141.1| GENE 10 8259 - 9389 1271 376 aa, chain - ## HITS:1 COG:no KEGG:lhv_0082 NR:ns ## KEGG: lhv_0082 # Name: not_defined # Def: surface layer protein # Organism: L.helveticus # Pathway: not_defined # 1 375 4 400 400 338 55.0 3e-91 MKKNKIALISAATLMTVAPLAVLTNTTNEVQAATTKAVMHTALAYDKDGNSTGVKYNAYQ YVTVESNPVKIDGSLYYKVSGKDQYIKATNIDGVTRKITHNTYIYRTSTGRTSYNNRWKL YKGETITTYGGSYKFKNGKHYFRIGGPNKQYIKSYNLGPVISVNTNNNTSSSSSQTTKSE ETTVTVTDKRAALFVEVPDKDAVQPSGKYAKQGDKFTVDRLEQGTRADTGRDGDDDNELA IYHIKGTDYWIYNFNVKAAKDIPVQNYYHTKKSLIQFIKPTDIYDANGNKIDFKGDQVRK QGGRYKVNKLLYIWVPSENKAELFYHLVGKSVYSNQGEVQFADGYVKASDVRFDPNSTSL TPSNTAAEAEAAAQKK >gi|227862057|gb|ACKR01000141.1| GENE 11 9506 - 10657 1143 383 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00012 NR:ns ## KEGG: LCRIS_00012 # Name: not_defined # Def: S-layer protein # Organism: L.crispatus # Pathway: not_defined # 3 383 2 368 368 342 53.0 2e-92 MKKNKIMLISVVALMGTAPILSTTTSAHTVQADSSITKTIMHNALAYDKDGNSTGHKYYV YGSVHVDPKLVTINGSQYYKVTDKDEYIKVTNIDGVTRKITHNAYIYRTSTQRTPYGMTA NSKKWKFYKGETVTTYGGSYKFKNGKRYFRVGGPRKQYIRSYNLGPVISTNTASNLTSNE SNNATNTNAEEATVTVKNAYGVNIYDNQGKAIKKNLKAGTKFIVDKLEVTPFADHFPSTA AQAGMYRIKGTDNWLLAIDVTADKKLVKHDYDHEHYGYIKFVKDTDVYNADGTMQNHNGA KIVKQGGNLKVDKLIYIWVPSENKAELFYHLVGTKFYATGNVDQIEVGNDAYVKASDVKF VNIGLTLTPSNTAAEAEATALKK >gi|227862057|gb|ACKR01000141.1| GENE 12 10776 - 11711 1029 311 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00011 NR:ns ## KEGG: LCRIS_00011 # Name: not_defined # Def: bacteriocin helveticin-J # Organism: L.crispatus # Pathway: not_defined # 45 310 6 291 292 278 54.0 1e-73 MLDATNIRILDRFDMNTGYRAVVQKGNVGSKYVYGLQLRNNQTETHVLRGFRGNVTTPVL TLVGAAAGHTQTWEYSGRSGKWFVGTKNKNKWASQIARADIRYKSYASSNTEFPRLAYLN RAGNPEDQCSGDEMERAEVAVSPDYSMLLIATIENNGTGHFSIYDLNVINNALDEAGNNG FVNMGNYQCETSFTVYGLYGSVLNSVQGYDLDNSGNIYITSQKSPSLSNGSWSYYHKEIV KIPFYARNDQSQWENVNLSAFGGLDISGEHSEVESIQIIDENHGYLTVAYHANVNGKNKT VSNKVYELAWD >gi|227862057|gb|ACKR01000141.1| GENE 13 11741 - 12058 247 105 aa, chain - ## HITS:1 COG:no KEGG:lhv_0085 NR:ns ## KEGG: lhv_0085 # Name: not_defined # Def: helveticin ORF 2 # Organism: L.helveticus # Pathway: not_defined # 1 105 1 107 107 143 74.0 2e-33 MDIHDYVELITLALWVISVVGIGILSRVHFKNKRLEQFRNTADSLMKSYVRLYDKENLSD EQKINRVGNAVVNSLEAKGFKLNRQEVQEIFAEVAKQMNEQTQDK >gi|227862057|gb|ACKR01000141.1| GENE 14 12418 - 12744 241 108 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00245 NR:ns ## KEGG: LCRIS_00245 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 108 1 108 108 206 99.0 3e-52 MNLREVNDKAGLGRNSIYNWKNQRPGIDALNAVADVLHTSADYLSGKTNNPSPSPKGDET GGISIDGEVPYFYHGYTIPEDYLNIVRQLMERDIKKGLIKRHDNSRSE >gi|227862057|gb|ACKR01000141.1| GENE 15 12722 - 13147 348 141 aa, chain + ## HITS:1 COG:no KEGG:lhv_0083 NR:ns ## KEGG: lhv_0083 # Name: not_defined # Def: putative prophage repressor # Organism: L.helveticus # Pathway: not_defined # 8 138 6 134 140 142 54.0 5e-33 MTTADQNKQELIDWLLAYAKKRDIMVELVEVNPTYPSISLKNYRFAVINTNWHHQEEVPF SIGHEIGHIMLTNGEVDSRQYITFTEQNSEESPADIFSIKLIYNYSCKMGDCFEDPGLFM QAYGIPNRVADATKEIFKRAA >gi|227862057|gb|ACKR01000141.1| GENE 16 13256 - 14815 1545 519 aa, chain - ## HITS:1 COG:L113400 KEGG:ns NR:ns ## COG: L113400 COG0038 # Protein_GI_number: 15673646 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Lactococcus lactis # 3 493 7 489 512 285 37.0 1e-76 MKDEANRTNIKLLLQALLVGICTGVVVGLFRFGIEKTSGFWLYLFQLAHQNPLWFIAIII GFIAVAVIAGYFVKQYPHVGGSGIPEVKLQLQGKLSLQWFPILWRKLIGGILVIGTGLFL GPEGPSLQLGSTIGQGVAQGCKQNKLKTRILLATGASSGLSAAFGAPLSGALFVLEEVFH NFSPLVWMNALAGAIASNFVVSNLFGIRHALAIQYNYSFPISLYWHLLILGILLGLLGHL YKVGLFSLKKVYAKITILPRWLHGLIPLAILIPIAYFWPLITGPGNRLILALPNIITKTG WGIVGMLAFYYVMRIVFSIVAYDSGLPSGIFLPILTMGALIGATYGLMMVQLGLLPQRLV VNLVIFSMAGYFAAIIRAPFTAIILITEMVGSLLHLMPLAVVAFIALLVDELLGGKPIYG LLAAAMDKSSDHKANYTGQADTMALPVYESSRLVDKTISEVQWPVDTRVRTIHRDGDEII PNGQTVIRGGDMLILEFDSSQRGAVYSKMKDLQGVELDG >gi|227862057|gb|ACKR01000141.1| GENE 17 14918 - 16321 1704 467 aa, chain - ## HITS:1 COG:L0046 KEGG:ns NR:ns ## COG: L0046 COG0362 # Protein_GI_number: 15672604 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Lactococcus lactis # 4 466 6 471 472 460 49.0 1e-129 MQQFGVIGLSVMGKNLALNVRNHGFSVSGFSIDKPEVDAFAKYEDDKLKPCYTWEEFVNS LEKPRKILIQIMAGDPVDQTLQKLLPLLDKGDILIDGGNSNYHDTNRRFHEMEKHGIHFI GMGVSGGEEGALNGPALMPGGDEPAYKEVAPILEAIAAKNTEGKPCVYYMGPEGAGHYVK MVHNGIEYGIMQEFSEVYNLLRDVAHKSDDEMSEIFDKWNYGKVEAYLSEITSKVLAQKD DLTPDHVIDHILNVASYKGTGNWMLEDGVALGAPVTVVAEAVMARFMSKQAHLTIEKGVK PTKFEYNGEIPDDMVDVFEKSLQLAQAVAYAQGFQQLTMAAEAYDWDLRYKSIAQDWEAG CIIRSAMLKDIEKAYDKNGKLMNLFQDDYFRGLMKENLPALRKSVEFATKCGVPTPTLSA ALNWLESIFNPNLPANMIQGQRDYFGAHTYLRNDREGVFHTEWYEEK >gi|227862057|gb|ACKR01000141.1| GENE 18 16623 - 16892 147 89 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_02018 NR:ns ## KEGG: LCRIS_02018 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 80 1 80 237 112 98.0 4e-24 MKSKKALISLLATALLAALFSASSVTANAADNSNSTAVAKFDKAITIKNIPRLSKWSYIV TVNSDSQPISVGKDSYQKMLLEKTSMTLI >gi|227862057|gb|ACKR01000141.1| GENE 19 17106 - 18914 2519 602 aa, chain - ## HITS:1 COG:L0199 KEGG:ns NR:ns ## COG: L0199 COG0028 # Protein_GI_number: 15674026 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Lactococcus lactis # 1 563 1 562 567 537 47.0 1e-152 MTKINGSDAMLKVIYDWGIDHIYGFPGGSFDSSMNAIYDFRDKMKFIEVRHEEAGALAAS AEYKLTGKLGVCFGSAGPGAAHLFNGLYDAKFDKTPMVAIVANVPTSRQDIDFFQAFDED KWFLNASVWCRQAKTAEQIPILTDEAIRQAYARKGPAVIIIPKDYGWQKIDDTFRVNKDA HPADNYPAPTKASVEEAVKLLKEAKNPTMYIGLGAKDAGEEVKEFAEKFKTPIMSSYLGK GVVEDKFPAYMGTIGRIGPKAAQEVQSATDLVVWVGNNSPFSVLWFPKNAKVIQIDVDSA KFGKRHSTDVSMLADAKKALRAIIDAGEERSESPLYKAAIADRENWDAWQASFKNSDEMP VRPEPIWDVINKKADDNAIFAIDVGNVNVDSCRLLNLHDDQKWTTSGLHATMGYGAPAAL TAATVYPDREVWQLAGDGGFAMMNQELLTMARYNMHVLNIVFTNETLGYIQAEQEDESHQ PLSGVIIPDNDWSKVAEGMNVKGVTVRTKKEFEDAVDEFKKMDGPMLIDVKYTHEMPYST ELNSLDDPAFVKKYQAEDLKPFSYFAEKYGLEADAATGASQHEESEPEEDPAPDTVSGAS QH >gi|227862057|gb|ACKR01000141.1| GENE 20 19283 - 21181 1940 632 aa, chain - ## HITS:1 COG:BS_gidA KEGG:ns NR:ns ## COG: BS_gidA COG0445 # Protein_GI_number: 16081153 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Bacillus subtilis # 5 632 3 628 628 827 65.0 0 MVKTYDSNEYDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKG TVVREIDALGGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPN LTLRQAIVDELVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNT TPSIKLSENLEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKIPRHFSYESRDEDYL QKQISCWMTYTNPTTHTIIRNNLDRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDRHQIF LEPEGKTTKEVYVGDFSTSMPEEIQLKMIHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHT LETKNVKHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDD LVTKGTNEPYRLLTSRAEYRLILRNDNADLRLTEYGHDLGLISDERFARFEEKKHAIEDA KTRLHEITVHLTDEVQEFLQSIGQEPMKAGVKADVFLRRPNVTIADIERLTGEKVPGDRY VKEQVEIGIKYAGYIKKEETRIARLKRQEAKKIPADIDYDQIEGLATEARQKFEKIRPET LAQAERISGVNPADLAILSVYIQNGRYSRVKK >gi|227862057|gb|ACKR01000141.1| GENE 21 21189 - 22574 1310 461 aa, chain - ## HITS:1 COG:SP1016 KEGG:ns NR:ns ## COG: SP1016 COG0486 # Protein_GI_number: 15900887 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pneumoniae TIGR4 # 7 461 5 457 457 511 61.0 1e-145 MAQTLTEFDTIAAISTPIGEGGISIVRMSGEDAIKIADEVFKGEDLSKVPTHTIHYGHII DPDTGKTIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSHGARMADPGEFT KRAFVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILNTLANVEV NIDYPEYDADTVTAKQMADTSRSVIDKINRLLKTAQEGKILRNGLATAIVGRPNVGKSSL LNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDKVEKIGVERSKKA LERADLVLLLIDASQALTAEDQALIEATKDKKRIVILNKSDLGQKITTTEMEKLTGSDVI STSILKEQNLDALEELINKLFFAGIENSNDQIMVTNQRQASLLHKAKKELEDVIQAVEDG VPVDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK >gi|227862057|gb|ACKR01000141.1| GENE 22 22685 - 23560 827 291 aa, chain - ## HITS:1 COG:lin2986 KEGG:ns NR:ns ## COG: lin2986 COG0706 # Protein_GI_number: 16802044 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Listeria innocua # 13 291 12 287 287 221 41.0 1e-57 MKDILTKRNVKRLLAVLAVAILAVVLTGCATTGANGQATPISHTSGNWWDRWIVYYMSAF ILWLAKLMGNSYGWAIIVFTVIVRVILVPLNAISIRSTTKMQSIQPQINELRKKYPGRDT ESRTLLQQETNKLYKEAGVNPYTGCLPVLIQLPVMYALYGAILRTPQLQTGRFLWMDLSK PDPYYIMPILAMIFTFLSTYISQLSTPKSSQNGMTKVMMYGMSIMVGVMALNFQSAITLY WVISNLFQALQTFILQNPIKYRREQEAKAEAERERKRKLRRAYKRLGRKKK >gi|227862057|gb|ACKR01000141.1| GENE 23 23562 - 23930 244 122 aa, chain - ## HITS:1 COG:lin2987 KEGG:ns NR:ns ## COG: lin2987 COG0594 # Protein_GI_number: 16802045 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Listeria innocua # 1 117 1 116 119 98 44.0 4e-21 MRKSYRVKSEKDFQQVFESGDSVANRAFVIYKVEKTENKHFRVGISVGKKVGHTAVARNR LKRYIRAVIDEEKLQINPHVDFLVITRPYARDFNMAQVRKNLLHALSLAHIIEEMPDKVE EK >gi|227862057|gb|ACKR01000141.1| GENE 24 23982 - 24140 233 52 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|58338218|ref|YP_194803.1| 50S ribosomal protein L34 [Lactobacillus acidophilus NCFM] # 7 52 1 46 46 94 100 7e-19 MEVQFNMTTKRTYQPKKRHRSRVHGFMKRMSTSNGRKVLARRRAKGRKVLSA Prediction of potential genes in microbial genomes Time: Wed May 25 06:37:52 2011 Seq name: gi|227862055|gb|ACKR01000142.1| Lactobacillus crispatus JV-V01 contig00153, whole genome shotgun sequence Length of sequence - 858 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 824 219 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|227862055|gb|ACKR01000142.1| GENE 1 3 - 824 219 274 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 23 274 33 266 317 89 29 1e-18 MNSEQRGQIQALLDSGITSCTAIAQEVGCHKSTISREIRRGSVLQRDSSYVLYEHYYADT AQIYHEKRRRNCYKCNPLQHYAVFFRMLSRRFKAKFDATSIDEFVGEFHRIMPNYPCPST PTVYRYIDQGLLDISNIDLPMKLKRRRNKRHHSHGGHAPHKKNLGNSIEQRPKEVENRKV PLHWEGDLVKGVRRKNQPALMTLTERTTRFEVVIKIPDYRASTCQRLLQKEIDRHPNWFK SITFDNGSEFADMTKIKGCQIYFAHPYSPWERGT Prediction of potential genes in microbial genomes Time: Wed May 25 06:38:01 2011 Seq name: gi|227862028|gb|ACKR01000143.1| Lactobacillus crispatus JV-V01 contig00154, whole genome shotgun sequence Length of sequence - 27536 bp Number of predicted genes - 25, with homology - 25 Number of transcription units - 9, operones - 7 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 47 - 712 629 ## LCRIS_00260 chloride channel protein 2 1 Op 2 . + CDS 725 - 1726 1334 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases + Term 1884 - 1926 6.7 + Prom 1775 - 1834 6.3 3 2 Op 1 . + CDS 2039 - 2383 202 ## LCRIS_00262 hypothetical protein 4 2 Op 2 . + CDS 2364 - 2639 344 ## LCRIS_00263 hypothetical protein 5 2 Op 3 . + CDS 2698 - 3933 1448 ## COG0112 Glycine/serine hydroxymethyltransferase + Term 3952 - 3990 7.5 + Prom 3938 - 3997 9.1 6 3 Tu 1 . + CDS 4082 - 5629 1579 ## COG0531 Amino acid transporters + Term 5630 - 5687 8.1 7 4 Tu 1 . - CDS 5675 - 6502 747 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 6529 - 6588 7.8 + Prom 6526 - 6585 8.5 8 5 Op 1 . + CDS 6618 - 8237 1917 ## COG0366 Glycosidases + Prom 8241 - 8300 4.3 9 5 Op 2 . + CDS 8347 - 8592 422 ## PROTEIN SUPPORTED gi|227878359|ref|ZP_03996314.1| ribosomal protein L31 + Term 8608 - 8644 6.4 + Prom 8625 - 8684 7.2 10 6 Op 1 2/0.000 + CDS 8718 - 10085 1592 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase 11 6 Op 2 . + CDS 10099 - 11586 1562 ## COG0513 Superfamily II DNA and RNA helicases + Term 11597 - 11648 9.7 + Prom 11590 - 11649 5.8 12 7 Op 1 5/0.000 + CDS 11669 - 12025 437 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) 13 7 Op 2 . + CDS 12030 - 13160 1230 ## COG0787 Alanine racemase + Term 13178 - 13218 5.1 - Term 13164 - 13204 5.1 14 8 Op 1 . - CDS 13225 - 13932 769 ## COG0517 FOG: CBS domain - Prom 13961 - 14020 11.3 - Term 14047 - 14080 1.4 15 8 Op 2 . - CDS 14104 - 15075 1365 ## COG0039 Malate/lactate dehydrogenases - Prom 15114 - 15173 10.3 + Prom 15048 - 15107 10.2 16 9 Op 1 7/0.000 + CDS 15212 - 15769 782 ## COG0193 Peptidyl-tRNA hydrolase 17 9 Op 2 3/0.000 + CDS 15771 - 19265 3016 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 18 9 Op 3 . + CDS 19281 - 19523 298 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 19 9 Op 4 . + CDS 19591 - 19968 535 ## LCRIS_00279 septum formation initiator 20 9 Op 5 2/0.000 + CDS 19968 - 20330 545 ## PROTEIN SUPPORTED gi|58336615|ref|YP_193200.1| putative ribosomal protein S1 + Term 20335 - 20362 -0.8 21 9 Op 6 14/0.000 + CDS 20369 - 21622 799 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control + Prom 21630 - 21689 4.3 22 9 Op 7 1/0.000 + CDS 21717 - 23885 1234 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 + Term 23893 - 23925 4.0 23 9 Op 8 2/0.000 + CDS 23938 - 24828 1108 ## COG1281 Disulfide bond chaperones of the HSP33 family 24 9 Op 9 3/0.000 + CDS 24906 - 25931 480 ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase 25 9 Op 10 . + CDS 25948 - 27498 1954 ## COG1190 Lysyl-tRNA synthetase (class II) Predicted protein(s) >gi|227862028|gb|ACKR01000143.1| GENE 1 47 - 712 629 221 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00260 NR:ns ## KEGG: LCRIS_00260 # Name: not_defined # Def: chloride channel protein # Organism: L.crispatus # Pathway: not_defined # 1 221 58 278 278 342 98.0 5e-93 MVMIGVVGAAIVFKLFPEEGLFGIHHRHILWQWRYSMYVIILLIVGWSFGMFFLWSEKWS DYFAKKITISPIIKATIWGIVLALLTLITSYALYSGEFQIVPFVHQALQISPLFLLVIAV IKTLSTNIGFSLGWRGGKIFPSIFASVAVGAAIAQFLPIMPVMCVAITVSASIAVILGKP LLTAILLILLLPIELAPVILVSAYLSACLTKVSYSFRQKNN >gi|227862028|gb|ACKR01000143.1| GENE 2 725 - 1726 1334 333 aa, chain + ## HITS:1 COG:AF0807 KEGG:ns NR:ns ## COG: AF0807 COG1304 # Protein_GI_number: 11498413 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Archaeoglobus fulgidus # 46 323 93 357 366 123 33.0 6e-28 MNEKNDAVTGASLIENQEEKVKSPWPGPKGMIPVTSGRADDANVHNRAYLDNILVEMRLL DSVEPDLTTEIFGKKYASPLTLAAVSHLNRVLPDKTRKPMQEKARAAKNTNTLNWIGMES NEEYAEIVKEGGDTVRIVKPYADHDKIMGELKQAEELGAVAVGMDIDHVPGDNGKYDVVD GIPLGPISFSDLEKYVHAVKLPFVAKGVLSVRDAVKARDAGAKAIVVSHHHGRVPFGVPP LKVLPAIKQALNGSGMTIFVDGSLMTGYDAYKALALGADAVLIGRGILSELLKDGQKATE DKIKKMNEQLAQMMLYTGVKDTKSFDPSVLHFD >gi|227862028|gb|ACKR01000143.1| GENE 3 2039 - 2383 202 114 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00262 NR:ns ## KEGG: LCRIS_00262 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 4 114 1 111 111 185 96.0 4e-46 MMLLKFHYERGCKTFFKKHKNEQKIIKQLIDQAITKELATGMTKVKIAAMTRIKGKSIYE FRLNLKKAGSARVAFAVKDEQVLVLLITSNLQKDSFSHELETVLKGSHYAFNSN >gi|227862028|gb|ACKR01000143.1| GENE 4 2364 - 2639 344 91 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00263 NR:ns ## KEGG: LCRIS_00263 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 91 1 91 91 160 100.0 1e-38 MRLIPIKQAETLLKKMCSNKSKYVEIKLLTAKKDRSISVKNDGKKLILTEDGYLNFTQEY ELTDPAVGRHAVLAAFKKEFPRSNRAYLIAK >gi|227862028|gb|ACKR01000143.1| GENE 5 2698 - 3933 1448 411 aa, chain + ## HITS:1 COG:L0082 KEGG:ns NR:ns ## COG: L0082 COG0112 # Protein_GI_number: 15672583 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Lactococcus lactis # 8 410 13 415 415 531 66.0 1e-151 MKYAEKSPALWDAIHHEEQRQQDTIELIASENIVSDAVREAQGSVLTNKYAEGYPGRRYY GGCQYIDQVEQLAIDYAKKLFNAKFANVQPHSGSQANMAVYQALLKPGDVILGMGMDAGG HLTHGSKVNFSGKEYKSYSYGLNVETEELDFDAIREIALKVKPKLIVAGASAYSRIIDWQ KFREIADEVGAYLMVDMAHIAGLVATGQHPSPVPVADVVTTTTHKTLRGPRGGMILSNNL EIGKKINSALFPGIQGGPLEHVIAGKAQAFYEDLQPQFTDYIKQVIKNAKAMAETFAESD NIRVVSGGTDNHLMIIDITKTGITGKDAQNLLDSVHITTNKESIPGDQRSPFVTSGLRIG TPVITSRGFDEADAKKTAEMIIEILSDPENPATIAHVKEEVQALTKKHPIE >gi|227862028|gb|ACKR01000143.1| GENE 6 4082 - 5629 1579 515 aa, chain + ## HITS:1 COG:SA2239 KEGG:ns NR:ns ## COG: SA2239 COG0531 # Protein_GI_number: 15928029 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 503 19 521 545 537 57.0 1e-152 MLALNSLIGSGWLFGSGSAAQIAGPAAILSWILGAVIIISIALTYVELGSMFPESGGMSR YAQYSHGPLLGFVAAWANWISLVTLVPMEAVAAVQYMSSWPWSWANWTKNFIKNGSITFA GLGVVIIFMLIFTMINFGSVKIMTHFTNLISIFKILLPTLTITVLIASGFHGQNFGSNLH EFMPYGSRSIFEATSVSGIIMSYDAFQTVINMGGELKNPRKNIVRGVLISMLITAAIYIM LQVTFIGAVEPGMLAKVGWHGINFTSPFADIAIILGINWLVILLYLDAFVSPFGTGVAFV ATASRALAAMTHTRHLPKWLGRLNQKYLIPRYAMIADFVLAVILVSLFRNWNLLATVITA STLIAYLTGPVTVMTLRKKRPDLDRPFNPGYMKWLAPVTFILTSLAIYWSMWPTTIQVII VIALGLPIYFYYEIHYQHSNLKEQLHSSWWMIGYLIFMSLMSFVGSSGFGGQNWIKYPFD FVVIIIISLAFYYWGIKTGLKKIDPYAEKIAQNKE >gi|227862028|gb|ACKR01000143.1| GENE 7 5675 - 6502 747 275 aa, chain - ## HITS:1 COG:lin0440 KEGG:ns NR:ns ## COG: lin0440 COG0561 # Protein_GI_number: 16799517 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 7 275 3 268 270 143 30.0 3e-34 MTTLPFKAVAVDVDGTFVNDEKQYDHQMFSEILTRLHQHGAHFIIASGRPAGRLADDFSE FIDSIDFVADNGAVLVRDGKIIRTTSFSKKCILNFIEYLHARYPGAAQNILISGVKHSYF LKSTPPEYKRSHHYFYPNSIEIDDFNKIPADDQYTKITMDYPSKIRHELEHGFNSRSTEK IHVTTSGWSYMDIIPEGVNKAAGLKEFLAYLDVPRSELIAFGDGENDLEMLKFAGLSYAM ANGQDIVKKTAKFIAPTNNDNGVFKVLNKYLDEAE >gi|227862028|gb|ACKR01000143.1| GENE 8 6618 - 8237 1917 539 aa, chain + ## HITS:1 COG:SP0342 KEGG:ns NR:ns ## COG: SP0342 COG0366 # Protein_GI_number: 15900272 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 4 538 5 534 535 666 60.0 0 MTPWWKKAVVYQIYPKSFQDSNGDGIGDLQGIIARLDYLENLGVDAIWLSPVYQSPGVDN GYDISNYEAIDPQYGTMADMDELIQKAKEHHIRIVMDLVVNHTSDQHQWFVEARKSKDNP YRDYYIWRDPVDGHEPNSLKSAFSGSAWKFDEQTGQYYLHFFAEQQPDLNWKNPELRQKI YDMMNFWLDKGIGGFRMDVIELIGKDPDKMIRENGPMLHPYLQEMNKNTFGDRDVMTVGE TWNATPKIAEEYSDPARHELSMVFQFENQALDQQEGKEKWDLKPLDLGELKKVLVKWQTE LDFNHAWNSLFWENHDIPRVISRWGNDKKYRVQCAKMFATVLHLMHGTPYIFNGEEIGMT NCPVKNIDEVEDIESVNMYHERLAEGYDKDKLIHAINVKGTDNARRPMQWNDEKNAGFTK SKPWLTVNPNYKEINVKKALADPNSIFYTYQELITLRHENEIVVNGDFKLVHDTGDEVLA YYRILGTEKWLVVANLSGEEQQFTSTDRIKENLLSNYAVRNDLHDITLKPYEAFAVAIK >gi|227862028|gb|ACKR01000143.1| GENE 9 8347 - 8592 422 81 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227878359|ref|ZP_03996314.1| ribosomal protein L31 [Lactobacillus crispatus JV-V01] # 1 81 1 81 81 167 100 9e-41 MKQGIHPEFQEVVFMDSATGAKFLAGSTLKPSETIDYEGETYPLVRVEVSSDSHPFYTGK QKFAQADGRIEKFNKKYGLKK >gi|227862028|gb|ACKR01000143.1| GENE 10 8718 - 10085 1592 455 aa, chain + ## HITS:1 COG:SPy1420 KEGG:ns NR:ns ## COG: SPy1420 COG0770 # Protein_GI_number: 15675337 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 1 454 1 452 463 355 43.0 1e-97 MKMQMAEIAKALNTTCEGDNQTVITSVAFDSRKITDGGLFVPLEGERDGHEFIASAINNG ASATLWKKGHPNKPEDIAVIEVDDPLAAMQELARYYLRKVNPTVVGITGSNGKTTTKDMI AAVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDV AVITMIGEAHIEFFGSRDKIADAKMEITDFLREDGEFIFNGDEPLLQERAEKLDQAKATF GFRDEDTVHATGFKSYMHHATFTVNDSEQKFSIPMIGKHNVSNAMAAISVGRHFGESDEE IASSLSNFTPTANRMEWEKGDAGESIMSDIYNSNPTAVRAVLTSFGQVEVKDNGRRIAVL GDMLELGKNSPELHAGLEDTLDPQIINEVYLYGSEMKNLYDALQDKYEPEHLHYYTQEQT DRMIDDLKNDIKSDDIVVLKGSHGMHLENVLARLR >gi|227862028|gb|ACKR01000143.1| GENE 11 10099 - 11586 1562 495 aa, chain + ## HITS:1 COG:lin0859 KEGG:ns NR:ns ## COG: lin0859 COG0513 # Protein_GI_number: 16799933 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 2 437 3 440 516 561 65.0 1e-160 MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL QMIDKKEKAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLKHHV PSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQTLL FSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRLIDVQGP DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDILVATDVA ARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRTIEQLTK KKMSPLRPPTDDQALHGQLKQAKIEIEDLMNGDLGKYTQGASELLDNYSALDLVAAFLKN LAKDEVKVKITPEKPLPYKGDGRRRRGKGHGRSNNNHGRDNHRRRSNNNSYRQNGNRGKR GRGNGHEFVIKNKKD >gi|227862028|gb|ACKR01000143.1| GENE 12 11669 - 12025 437 118 aa, chain + ## HITS:1 COG:SP1699 KEGG:ns NR:ns ## COG: SP1699 COG0736 # Protein_GI_number: 15901533 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Streptococcus pneumoniae TIGR4 # 1 117 1 116 120 101 43.0 4e-22 MIKGVGIDSIEVERVKKIVDKGDAFAKKVLTPKEFDQYQKMAGKRKVEYLGGRFSLKESF SKAMRTGLGKYIGFQDVETLWDDLGHPVMTSTKFDGNIFPSITHDNHEIITFVVLEEK >gi|227862028|gb|ACKR01000143.1| GENE 13 12030 - 13160 1230 376 aa, chain + ## HITS:1 COG:L0103 KEGG:ns NR:ns ## COG: L0103 COG0787 # Protein_GI_number: 15672826 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Lactococcus lactis # 6 373 6 366 367 343 49.0 4e-94 MVPGYHRPAVVKVNLGAIRRNIKNEMKHLATGQKMLAVVKANAYGHGAVEVAKIAIEEGA AGLCVAILDEALQLRHADIVKPILVLGVVSPEYAPIAAANNVSLTIPNLEWLKEAEKYLE KEQLQLKVHIGVDSGMGRIGFNEDEDFIAANKFLQNNDNFYVEGMFAHFASADSADDTYF KHQVEKFAHMRSLLTVKPKWIHVDNTAASIFNKDVPSDCVRFGIGIYGLNPSSNPDSPDL KSSISLEPALSFESELTHVKTIHEGDGVGYGSTFVADQDTIIGTVPVGYADGFIRKFQGF KVKVGDEYCPIVGRICMDQFMVKMPKKMPLRTKVVIISNDPTAPNNIKAAADYVDTIHYE VACLLNDRLPRVYYEK >gi|227862028|gb|ACKR01000143.1| GENE 14 13225 - 13932 769 235 aa, chain - ## HITS:1 COG:lin0562 KEGG:ns NR:ns ## COG: lin0562 COG0517 # Protein_GI_number: 16799637 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 214 1 210 211 219 50.0 3e-57 MLIKSLVIKKDYLTTVNEKATLAEALKVLEDSGYRCVPIVDDTGTIFRGNIYKMHIYRHK SQGGDMNLPVTYLLKNATKTIKVNSPFFKVFFNIKDLPYIAVLDEDNHFYGILTHSRMLD MLSDAWDVKNGSYVLTVLSDNTRGNLIKMSKIVSKHTNMSSVMTLDAAAGELEGNFVRRT LFTLPAGVSDITMRTIVDKLQRKGFVVSEIEDLQAGMTIMSDENPGVFIEHPVKD >gi|227862028|gb|ACKR01000143.1| GENE 15 14104 - 15075 1365 323 aa, chain - ## HITS:1 COG:lin0242 KEGG:ns NR:ns ## COG: lin0242 COG0039 # Protein_GI_number: 16799319 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 8 316 5 311 313 378 59.0 1e-105 MPRDERPRKVILVGDGAVGSTFAFSMVQQGIAEELGIIDIAKEHVEGDAIDLADATPWTS PKNIYAADYPDCKDADLVVITAGAPQKPGETRLDLVNKNLKILSSIVEPVVESGFEGIFL VVANPVDILTHATWKMSGFPKDRVIGSGTSLDTGRLQKVIGEMEHVDPRSVNAYMLGEHG DTEFPAWSYNNVGGVKVSDWVKAHGMDESKLEDIHKEVANMAYEIINKKGATFYGIGTAS AMIAKAILNDEHRVLPLSVPMDGQYGLHDIHIGTPAVVGRKGLEQIIEMPLSDKEQELMT ASADQLKKVMDKAFKETGVKVRQ >gi|227862028|gb|ACKR01000143.1| GENE 16 15212 - 15769 782 185 aa, chain + ## HITS:1 COG:lin0245 KEGG:ns NR:ns ## COG: lin0245 COG0193 # Protein_GI_number: 16799322 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Listeria innocua # 1 185 1 184 184 160 42.0 1e-39 MKIIAGLGNPGQKYDKTKHNTGFMTMDHYLNEKGLSLDKDKFEGHWTKQKINGEDVILLE PQTFMNESGRSVSQVANFFKVDPADVLIIQDDMDMPIGKIRIRANGKSGGHNGIKSIIRD LGTEKFNRLKIGIRHPKNATVVSWVLTPFNDEQQKLMDDAFAISVDIIDDFISGHGSQYL MNKYN >gi|227862028|gb|ACKR01000143.1| GENE 17 15771 - 19265 3016 1164 aa, chain + ## HITS:1 COG:BS_mfd KEGG:ns NR:ns ## COG: BS_mfd COG1197 # Protein_GI_number: 16077123 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Bacillus subtilis # 23 1113 25 1123 1177 1036 48.0 0 MRLTEILDKDQDLNNFISKTKQVKNSLITGANAGAFSLLLKQITTKLAAPLILIEENESK AQNLYGELSAIMADETVQIFPVDATIATQTAVSSPDELSSRIQALNFLLSGKAGIVVTTP QGLQYKLTNPTDFAQAKRSFEPGQEYELKELNEWLLASGYQRDSLVARPGEFAIRGDILD VYPLDRENPVRIEFFGDEIDTIKEFDLASQRSQKELDKVEVAAAQDRVFTKDAIAAAAKK IEQDMASAPAPAKAVKDHFAAVLDELNDGGLPKNYAFLIDYLLEISSSLLEYLPKNGQIL FDDLPLINQAVETVDKQNAAFINDELKTGAMLPGQSLRSDYTKILSKDKHHRIYFSLFQR SMGRLRLGQMLNWSTREPEQFFSQMPLIKSELESYQKAGQTVILQADNEKRAQQIDQTMV DFGLNLPIVGADEIVEQRTQIVVDGFVSGFSLPTVKLVYLTERELFNKRPQRKKRIKTLE NAQRLRNYTELKPGDYVVHVNHGIGRFEGIKTLENNGTKRDYITITYQHGDQLFVPADQL SLVQKYVGSEGKTPHINKLGGSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGFAFSPD DDLQKQFEDAFPYPETPDQLRSVKEIKQDMESSKPMDRLLVGDVGFGKTEVALRAAFKAI QDNKQVAFLVPTTILAQQHYETIQDRFKDFPVNTTMLSRFQTPVESKEIIEGLKNGKIDL VVGTHRILSQDVKFKNLGLLIVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMS MVGVRDLSVMETPPQNRYPIQTYVMEQIPSVVRDACLREMQRDGQVFYLHNRISDIDETV EKLQELMPQARIAAAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIE DADHYGLSQLYQLRGRIGRSARLAYAYFLYKPNKVLTEVGEKRLDAIRDFTELGSGFKIA MRDLSIRGAGNMLGAQQHGFIDSVGYDLYSQMLADAIQDRKGKTTIKKSNAEIDLGLEAY IPDSYIGDQEEKIEFYKKIKAVSSQEELGKIEDELIDRFGDYPTAVENLLAVAGLKVDAD MAQVLNVVKTDDKIKVEFTNAASRELEGPNIFKALEHVSLKARISMNQEKRMVVLLLLPD KMKNRVLFNELAIFLQAASDIVQR >gi|227862028|gb|ACKR01000143.1| GENE 18 19281 - 19523 298 80 aa, chain + ## HITS:1 COG:L1001 KEGG:ns NR:ns ## COG: L1001 COG1188 # Protein_GI_number: 15671997 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Lactococcus lactis # 1 79 17 95 105 79 55.0 2e-15 MRIDKFLKVSRLVKRRTVAKEMADQGRIKVNGRVVKSSYDVKIDDIIEVGYGAKTIKAKV LNIRETTKKAEASELYELVD >gi|227862028|gb|ACKR01000143.1| GENE 19 19591 - 19968 535 125 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00279 NR:ns ## KEGG: LCRIS_00279 # Name: not_defined # Def: septum formation initiator # Organism: L.crispatus # Pathway: not_defined # 1 125 1 125 125 198 100.0 4e-50 MNHGPRIYNSLSPEEQRARLRRKQAKLEKETHRKRLNVIMAVFAIIFVALGVQIAIKISQ TGRLNNQVQAEKQTLTKVKNKRNDLETEKQDLKDPNYVAKLIRYKFYYSKSNEKIYNVHE RNDDN >gi|227862028|gb|ACKR01000143.1| GENE 20 19968 - 20330 545 120 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58336615|ref|YP_193200.1| putative ribosomal protein S1 [Lactobacillus acidophilus NCFM] # 1 120 1 120 120 214 84 5e-55 MEKYQAGNRVTGVINNITDLGIFVTLPNRHSGLVHHSDFGNNWLRERRRYHAGDEVRVVV VHIHKGRFNLSITRVNDPELVDHDNQFSKTKPADFDQVLNQTTRDAKEEIEKLKQVLTEN >gi|227862028|gb|ACKR01000143.1| GENE 21 20369 - 21622 799 417 aa, chain + ## HITS:1 COG:lin0251_1 KEGG:ns NR:ns ## COG: lin0251_1 COG0037 # Protein_GI_number: 16799328 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Listeria innocua # 2 224 7 232 469 140 34.0 5e-33 MKINDFFEQHQIDLKDKRLLVAASAGPDSMALLDMLVNLQKQLSFTVFAAHFDHQLRADS SYEVEVLQNYCAQKKICLFNGKWDKHDQPQTGIEAAAREARYHFLTNVAHSERMNYLLTA HHGDDLLENILLKFIRSGNPEEMNSLQDIGSMHGVVLLRPLLAYSKQELLEYDQEREIDY VIDSTNTEDETVRNRLRHHVVPLLKEENPNLISNALRFSEKMSQLTDLADEQLNSMRTVE PFLGAWRIKTDNLNDLSTEEKNIFWQKIIWQKYHRRVNENLGNFEVIDYQGYSYLVENKP QKIVQPFSIELNQQFEFNGAYYLLTTDRQADLKEIGSFWLERDAHFTAGSLVPASKLLLK NGQRVKAKKKFAEKAIPFALRSCCITIYAENEPVFVEKCYQKQDFITDGKHYFLYIY >gi|227862028|gb|ACKR01000143.1| GENE 22 21717 - 23885 1234 722 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 3 669 2 636 636 479 41 1e-135 MKNNRNRLLSNGLFYIVVFLLLLWGINWALGGSNNSGSSENISYSQFVKDLRQGKVKNFS VQPANGVYTVSGSYKTAQTTKNQSNNSFDFFSNNSSRKVSRFSTTMLQNDSTVSNVQNLA QKSNARMTTQGESQSGNWISTIVMLVPTVLFIVMLWMMMNQGGAGRGGGGGIMNFGRSHV KPEDPSKNKVRFSDVAGEEEEKQELVEVVEFLKDPSKYTKLGARIPSGVLLEGPPGTGKT LLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFNNAKKNAPSIIFIDEIDAIGRR RGNGTGGGNDEREQTLNQLLVEMDGFEGDEGVIVIAATNRSDVLDPALLRPGRFDRKVLV GRPDVRGREAILKVHAKNKPLAPDVDLKEVARQTPGFVGADLANVLNEAALVAARRNGTE ITASDIDEAEDRVIAGPAKKDRLISEKERRRVAFHEAGHSICGLVLSDSRTVRKVTIVPR GRAGGYNIMLPKDDQFILTKKQLFEQIVGLMGGRAGEEATIGDKSTGASNDFEQATQIAH SMVVNYGMTESLGMVELEKEGESNPYGFKPYSEATSAKIDEAVKKILDEAHAKALEIVKD NKEKHRIIAEALLKYETLNEKQIMALYKTGKMPEKDEDEYPSESKASTYEEAKAAAEKRE VEKAEKKDSDQALADQEKDTLETPSEKNHEVEENNPENPEKDQSENETSTQDTPADDEHK DN >gi|227862028|gb|ACKR01000143.1| GENE 23 23938 - 24828 1108 296 aa, chain + ## HITS:1 COG:lin0254 KEGG:ns NR:ns ## COG: lin0254 COG1281 # Protein_GI_number: 16799331 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Listeria innocua # 1 279 1 282 294 262 46.0 6e-70 MSDYLVKSIDKTKNLRLLTITAKGVVSEAQKRHDLWSASAAVLGRTLVGSLLLAGAELTD KEELTVRLLGNGPVGPTIVTATSDLKVKGYVKNPHIALPPKKNGHIDVKKAVGQGWFEVT KDLGLKEPYTGQVPIVSGEIAEDFAYYLTKSEQIPSAVGLSVFVNPNNSIGEAGGFMLQA LPGASDALIDETIKRIDALPALSTSFLDGMTPEDLARKILGTDCKILEKDDVAFNCDCSK EKYAGILETLKSDQLKAMINEDHGAELTCNFCGNKYHYSEDELKDILAKKNKDKDY >gi|227862028|gb|ACKR01000143.1| GENE 24 24906 - 25931 480 341 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 6 321 29 343 353 189 33 2e-47 MNNSWKIRDITIPNRVVVAPMAGVSNSAFRVVCKEFGAGLVVCEMISDHGIIYGNKKTLS MMDVDPREHPMSIQIFGGSEETLLQAAQYIDQHTDADIIDINMGCPVPKVTKTDAGSKWL LDSNKIYQMVHAVVQNVKKPVSVKMRTGWDKKHIFAVENALAAQEAGASMIAMHGRTRKQ MYQGEADWEVLHDVAQVLDVPFVANGDIRTPELAKKALDEIGCTAVMVGRAALGNPWILK DMVHYLETGEKLKPQTVREKVETAKHQLHALVKIHGEKRAVPEFRQQAAYYLKGIPRSAR TRAKINEVWTRQEVYDLLDNFVDEYEKREEARAARRATMNK >gi|227862028|gb|ACKR01000143.1| GENE 25 25948 - 27498 1954 516 aa, chain + ## HITS:1 COG:SP0713 KEGG:ns NR:ns ## COG: SP0713 COG1190 # Protein_GI_number: 15900610 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Streptococcus pneumoniae TIGR4 # 5 493 3 491 491 650 66.0 0 MAKNEMNDQLIVRRQKMEELRENGIEPFGQRKFDRQDLASTLEEKYGNEDKEELNADMPK TKIAGRMLAKRGKGKVGFADLYDRTGKIQIYVRKDIVGEDNYKIFKKSDIGDFLGIEGEV MKTDTGELTIRALHVTFLSKALRPLPDKYHGLKDVEAIYRQRYLDLITNHDSYMRFVHRT QIIQAIRDYLNGQNFLEVETPVLHNIPGGAEARPFITHHNALDINLYMRIALELPLKRLI VGDMERVYEIGRVFRNEGLDTHHNPEFTELESYAAYWDYHDVMDEAEGIIRAAAKVVSDD GKITYQGTDIDLGKPFRRVHMVDLIKEKTGVDFWKPMTLEEATKIAEDHDIHVEKFWKVG HIINAFFEKYCEETIVDPTFVYGHPVEISPLAKKNADDPRFTDRFEIYIMGEEYGNAFSE LNDPDDQRERFEAQMEEREAGNDEADMIDEDYLRAMEYGMPPTGGLGIGIDRLVMLLTDA PAIRDVLLFPTMRPERVESVEAEVKADMEKKNKENK Prediction of potential genes in microbial genomes Time: Wed May 25 06:38:12 2011 Seq name: gi|227862026|gb|ACKR01000144.1| Lactobacillus crispatus JV-V01 contig00155, whole genome shotgun sequence Length of sequence - 556 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 21 - 80 4.3 1 1 Tu 1 . + CDS 163 - 528 290 ## LCRIS_01143 transcriptional regulator, XRE family Predicted protein(s) >gi|227862026|gb|ACKR01000144.1| GENE 1 163 - 528 290 121 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01143 NR:ns ## KEGG: LCRIS_01143 # Name: not_defined # Def: transcriptional regulator, XRE family # Organism: L.crispatus # Pathway: not_defined # 3 121 1 119 119 180 99.0 1e-44 MLVNINLGEEISRRRREQKLTQEDLAELSDLSVNFISRVERTKDQNISIQKLDSIAKALN TTTPDIINNAYRAKKIKPEKIHDNNTPVFMKKVINELRKLPEPKAERVCKSLITLLKEMN N Prediction of potential genes in microbial genomes Time: Wed May 25 06:38:15 2011 Seq name: gi|227862024|gb|ACKR01000145.1| Lactobacillus crispatus JV-V01 contig00157, whole genome shotgun sequence Length of sequence - 311 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 310 205 ## LCRIS_01732 transposase Predicted protein(s) >gi|227862024|gb|ACKR01000145.1| GENE 1 1 - 310 205 103 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01732 NR:ns ## KEGG: LCRIS_01732 # Name: not_defined # Def: transposase # Organism: L.crispatus # Pathway: not_defined # 2 103 64 165 408 181 88.0 7e-45 RLQAFLEDYGYEYVVINPLKAKKEMNMGLRYNKTDKTDAYHLALIQRLYRHPVNQSESQT YKQLNALSRFYDQLTSDLVIAKNRLHQALQSTFPEIENLFSSA Prediction of potential genes in microbial genomes Time: Wed May 25 06:38:17 2011 Seq name: gi|227862022|gb|ACKR01000146.1| Lactobacillus crispatus JV-V01 contig00158, whole genome shotgun sequence Length of sequence - 239 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:38:17 2011 Seq name: gi|227862020|gb|ACKR01000147.1| Lactobacillus crispatus JV-V01 contig00159, whole genome shotgun sequence Length of sequence - 239 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 237 58 ## LJ0275 transposase Predicted protein(s) >gi|227862020|gb|ACKR01000147.1| GENE 1 3 - 237 58 78 aa, chain - ## HITS:1 COG:no KEGG:LJ0275 NR:ns ## KEGG: LJ0275 # Name: not_defined # Def: transposase # Organism: L.johnsonii # Pathway: not_defined # 1 78 54 131 349 127 73.0 9e-29 KRGTVKLYHGNIKRYKAQQGQSVYQNHRQHCGRKSDFLKKHKFIDYVQRHFFEDGWSLDV CSNRCTAVGEFASSDIVC Prediction of potential genes in microbial genomes Time: Wed May 25 06:38:19 2011 Seq name: gi|227862018|gb|ACKR01000148.1| Lactobacillus crispatus JV-V01 contig00161, whole genome shotgun sequence Length of sequence - 326 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:38:20 2011 Seq name: gi|227862017|gb|ACKR01000149.1| Lactobacillus crispatus JV-V01 contig00162, whole genome shotgun sequence Length of sequence - 202 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:38:20 2011 Seq name: gi|227862012|gb|ACKR01000150.1| Lactobacillus crispatus JV-V01 contig00165, whole genome shotgun sequence Length of sequence - 2043 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 193 - 252 6.2 1 1 Op 1 . + CDS 444 - 1184 783 ## LBA1690 hypothetical protein + Term 1227 - 1271 0.2 + Prom 1258 - 1317 7.4 2 1 Op 2 . + CDS 1369 - 1674 382 ## gi|227878390|ref|ZP_03996338.1| hypothetical protein HMPREF0506_1339 + Term 1698 - 1757 7.8 Predicted protein(s) >gi|227862012|gb|ACKR01000150.1| GENE 1 444 - 1184 783 246 aa, chain + ## HITS:1 COG:no KEGG:LBA1690 NR:ns ## KEGG: LBA1690 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 244 1 246 280 340 78.0 3e-92 MKKSIKLLSTISIAVALAGGAITAVNNQETSNVDAASITLPSGYTKDAVIKWNQTGKASK ALVNASIKGMKENNDSDAGSDNTLVNVTKLTDSQKVELSNYTLELINSARNQLGKQSGTY KRGALNFADRVANQYYSNNKSCWDPDHYVTGIERAAKASGLNSRVGQVYEDEAGLPISSE FNTNYRTMSALKSQIYFNVKQMLFGGFAGSSSQMGDASKYTEWEHAGDLLGCRTKRYIQN YKKFNN >gi|227862012|gb|ACKR01000150.1| GENE 2 1369 - 1674 382 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878390|ref|ZP_03996338.1| ## NR: gi|227878390|ref|ZP_03996338.1| hypothetical protein HMPREF0506_1339 [Lactobacillus crispatus JV-V01] # 1 101 1 101 101 146 100.0 4e-34 MKSEEELHKLVEKVIDDFAAWDEDERYKEPEKELRQLLEDSKVLGFIMYTRLSDILGWHH RMLTEAKEERTLTAKEEVLLNDMDAVHDLMERTMDEENGRL Prediction of potential genes in microbial genomes Time: Wed May 25 06:38:30 2011 Seq name: gi|227862010|gb|ACKR01000151.1| Lactobacillus crispatus JV-V01 contig00166, whole genome shotgun sequence Length of sequence - 200 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:38:30 2011 Seq name: gi|227862008|gb|ACKR01000152.1| Lactobacillus crispatus JV-V01 contig00167, whole genome shotgun sequence Length of sequence - 836 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 834 518 ## COG3513 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|227862008|gb|ACKR01000152.1| GENE 1 3 - 834 518 277 aa, chain - ## HITS:1 COG:SPy1046 KEGG:ns NR:ns ## COG: SPy1046 COG3513 # Protein_GI_number: 15675041 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 7 276 540 810 1368 91 31.0 2e-18 SVNGKKLSVSVKQELYEDLFKKNNTVSAKQLKNWLIENQKLPYIKIKGLADQTKFNSSLS TYIKLKKSGLFVDKLDSNEFRDDFEKIIEWSTIFEDKQIYIQKLQTIDWLTAKQIQFLQN IRLQGWGRLSKKLLTAIVDSNGQNIIEQLWNSQQIFMSIVNKADIKGTITDANQDLMHSN SMEDILSEAYTSPANKKMIRQVVKVVHDIQKAASGQAPKQIAIEFARESRRNSKLSQTRG HKLQDIYQKISGDIVNKNLKDKLAEYIKNNQLNKDKY Prediction of potential genes in microbial genomes Time: Wed May 25 06:38:31 2011 Seq name: gi|227862006|gb|ACKR01000153.1| Lactobacillus crispatus JV-V01 contig00168, whole genome shotgun sequence Length of sequence - 1100 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 25 - 84 7.0 1 1 Tu 1 . + CDS 263 - 1100 504 ## COG3547 Transposase and inactivated derivatives Predicted protein(s) >gi|227862006|gb|ACKR01000153.1| GENE 1 263 - 1100 504 279 aa, chain + ## HITS:1 COG:SP0917 KEGG:ns NR:ns ## COG: SP0917 COG3547 # Protein_GI_number: 15900797 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pneumoniae TIGR4 # 8 189 5 187 238 60 29.0 4e-09 MESQIIFGIDVSSKSSTVCVVNDRIKQGESFRISNDSFGYQKLYEQLNQYLITPLVVFEA TGVYSLSLQAFLEDYHIKYLKLNPLKAKKLMDNNLRHNKTDKVDAYRLALIQFNAPQKLR DPQPREYHELQNASRYYEELTRSIVTTKNQLHRNLQSTFPQIEEILSHPSGRIYWALVSL FPHAGYVLEKNETQVTQMLNSISGIGQQRARYLTTRLYAFAREAYPYDSKDSIIVRAIQR NISNLFSLQQERDYVINYMEKLAKAVNARALSIYLSIPG Prediction of potential genes in microbial genomes Time: Wed May 25 06:38:32 2011 Seq name: gi|227862004|gb|ACKR01000154.1| Lactobacillus crispatus JV-V01 contig00169, whole genome shotgun sequence Length of sequence - 1100 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 25 - 84 7.0 1 1 Tu 1 . + CDS 263 - 1100 504 ## COG3547 Transposase and inactivated derivatives Predicted protein(s) >gi|227862004|gb|ACKR01000154.1| GENE 1 263 - 1100 504 279 aa, chain + ## HITS:1 COG:SP0917 KEGG:ns NR:ns ## COG: SP0917 COG3547 # Protein_GI_number: 15900797 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pneumoniae TIGR4 # 8 189 5 187 238 60 29.0 5e-09 MESQIIFGIDVSSKSSTVCVVNDRIKQGESFKISNDSFGYQKLYEQLNQYLITPLVVFEA TGVYSLSLQAFLEDYHIKYLKLNPLKAKKLMDNNLRHNKTDKVDAYRLALIQFNAPQKLR DPQPREYHELQNASRYYEELTRNIVTTKNQLHRNLQSTFPQIEEILSHPSGRIYWALVSL FPHAGYVLEKNETQVTQMLNSISGIGQQRARYLTTRLYAFAREAYPYDSKDSIIVRAIQR NISNLFSLQQERDYVINYMEKLAKTVNARALSIYLSIPG Prediction of potential genes in microbial genomes Time: Wed May 25 06:38:33 2011 Seq name: gi|227862001|gb|ACKR01000155.1| Lactobacillus crispatus JV-V01 contig00170, whole genome shotgun sequence Length of sequence - 1866 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 23/0.000 + CDS 73 - 801 352 ## COG2963 Transposase and inactivated derivatives 2 1 Op 2 . + CDS 876 - 1808 632 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|227862001|gb|ACKR01000155.1| GENE 1 73 - 801 352 242 aa, chain + ## HITS:1 COG:L28615 KEGG:ns NR:ns ## COG: L28615 COG2963 # Protein_GI_number: 15672622 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 68 238 4 172 185 62 29.0 1e-09 MSRKSKYSFDQKIWAVEQYLNGNRSSVEIAKRLKMPSKSGAMQVRRWVHQYQSNRDTLLS NAQYNNHYSKAFKEKVVQEYLAGKMSLPSLANKYGIRSNGTVSEWVSKYNSHIENRDYDP HPEVYMTKARRKTTQQERIQIVQYCLNHDKNYTQTAVKFDCSYQQVYSWTHKYLANGETG LTDKRGRHKKPEELTELELANRKIKELERQLKEEQTKNEFLKKLDQLERMCLPDNQDTDK PQ >gi|227862001|gb|ACKR01000155.1| GENE 2 876 - 1808 632 310 aa, chain + ## HITS:1 COG:yi5B KEGG:ns NR:ns ## COG: yi5B COG2801 # Protein_GI_number: 16131429 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1 271 16 277 283 143 35.0 4e-34 MCKWAKIARSAYYKYFDPKRKPSKREERDKKIEAKIIEITKSNNSLFGTEKMTMAVNRQM SDEKPVYHKTVYRLMCINGIRSQKPRYQKLKFKHTTPEKTAENKLKRDFNASRPNEKWCT DITEVVAANLPKAYLCTVFDLYDRYPVGYAISKRNDTALVQAAYKQAVKAYPNAHPLFHS DRGFQFTRAPFQNQLKDQGMTQSMSRVGCCIDNGPMEGWQGIIKEMRVILHPQVASYDEL NDSICKTIDYYINEDPQKRFNGLTAGERRKEAMKGNIKNCPIAPNHRIEKYWQKIHEKKI REAKKSSADY Prediction of potential genes in microbial genomes Time: Wed May 25 06:38:34 2011 Seq name: gi|227861999|gb|ACKR01000156.1| Lactobacillus crispatus JV-V01 contig00171, whole genome shotgun sequence Length of sequence - 1934 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 81 - 1379 704 ## COG3344 Retron-type reverse transcriptase - Prom 1412 - 1471 3.2 Predicted protein(s) >gi|227861999|gb|ACKR01000156.1| GENE 1 81 - 1379 704 432 aa, chain - ## HITS:1 COG:BH0224 KEGG:ns NR:ns ## COG: BH0224 COG3344 # Protein_GI_number: 15612787 # Func_class: L Replication, recombination and repair # Function: Retron-type reverse transcriptase # Organism: Bacillus halodurans # 3 407 1 396 418 331 42.0 2e-90 MELIEQILSQNNLKEAIRRVKINKGAPGVDRRTVDELDSYFKKHQVEIKDAIMKMKYRPQ AVRRVYIPKANGKKRPLGIPTVVDRVIQQAIAQVLMKIYDPHFSEHSYGFRPGRSAHDAI EQVLEYLNEGYQWVVDLDIEKYFDTVNHDKLISIIREQVNDKTTLHLIRAFLKAGVMEDG WVKPNKLGVPQGGPLSPILSNIYLDKMDKELEQRGLRFVRYADDCNIFVKSGKSAKRVMN SISSWLERKLFLKVNATKTKVVRPTKSNFLGFTFWKSGEYWQAKPGDDRKIKLYDKMREL LCRRKAAAQPLSLVFTKINQVVRGWVNYFRVGDMKYFLIKFSQWLRHKVRVVIIKQWKLP KRIYINLMRINKALKCNFSDEDIHKVANTRLGWYKRSTGYVINFLLSPKVLGISKADRPG LVDPLEYYLSRK Prediction of potential genes in microbial genomes Time: Wed May 25 06:38:34 2011 Seq name: gi|227861998|gb|ACKR01000157.1| Lactobacillus crispatus JV-V01 contig00172, whole genome shotgun sequence Length of sequence - 358 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:38:55 2011 Seq name: gi|227861935|gb|ACKR01000158.1| Lactobacillus crispatus JV-V01 contig00173, whole genome shotgun sequence Length of sequence - 68716 bp Number of predicted genes - 60, with homology - 60 Number of transcription units - 38, operones - 15 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 18 - 77 6.4 1 1 Op 1 24/0.000 + CDS 144 - 1034 591 ## COG1131 ABC-type multidrug transport system, ATPase component 2 1 Op 2 2/0.077 + CDS 1024 - 1782 564 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component 3 1 Op 3 . + CDS 1799 - 2569 362 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component + Term 2684 - 2720 -0.7 - Term 2785 - 2836 8.0 4 2 Tu 1 . - CDS 2856 - 4163 1307 ## COG2252 Permeases - Prom 4210 - 4269 6.1 + Prom 4167 - 4226 8.2 5 3 Tu 1 . + CDS 4392 - 5192 914 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 5194 - 5239 9.2 - Term 5182 - 5227 9.2 6 4 Tu 1 . - CDS 5240 - 5698 483 ## LCRIS_01992 putative protein without homology - Prom 5724 - 5783 7.9 - Term 5761 - 5805 -0.9 7 5 Op 1 3/0.077 - CDS 5813 - 6499 971 ## COG1428 Deoxynucleoside kinases 8 5 Op 2 . - CDS 6517 - 7251 524 ## COG1428 Deoxynucleoside kinases - Prom 7287 - 7346 9.4 - Term 7385 - 7426 3.4 9 6 Tu 1 . - CDS 7459 - 8178 935 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase - Prom 8264 - 8323 7.7 + Prom 8225 - 8284 6.9 10 7 Op 1 . + CDS 8305 - 8733 445 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 11 7 Op 2 . + CDS 8746 - 9132 375 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 9196 - 9251 3.3 - Term 9195 - 9228 3.1 12 8 Op 1 26/0.000 - CDS 9237 - 10193 1092 ## COG1079 Uncharacterized ABC-type transport system, permease component 13 8 Op 2 24/0.000 - CDS 10193 - 11350 1108 ## COG4603 ABC-type uncharacterized transport system, permease component 14 8 Op 3 15/0.000 - CDS 11334 - 12872 1654 ## COG3845 ABC-type uncharacterized transport systems, ATPase components - Prom 12892 - 12951 3.3 - Term 12893 - 12932 6.1 15 8 Op 4 2/0.077 - CDS 13059 - 14039 1369 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein - Prom 14096 - 14155 7.9 - Term 14052 - 14103 11.0 16 9 Tu 1 . - CDS 14180 - 15274 1147 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein - Prom 15451 - 15510 11.2 17 10 Tu 1 . + CDS 15580 - 16185 762 ## LCRIS_01982 membrane protein 18 11 Tu 1 . - CDS 16277 - 19015 2509 ## COG2352 Phosphoenolpyruvate carboxylase - Prom 19061 - 19120 4.8 19 12 Op 1 . - CDS 19122 - 21461 2223 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 20 12 Op 2 . - CDS 21494 - 22579 950 ## COG1434 Uncharacterized conserved protein - Prom 22611 - 22670 6.3 + Prom 22554 - 22613 3.7 21 13 Tu 1 . + CDS 22671 - 23324 619 ## COG1266 Predicted metal-dependent membrane protease + Term 23337 - 23373 6.6 22 14 Tu 1 . - CDS 23353 - 24222 855 ## lhv_1911 hypothetical protein - Prom 24274 - 24333 6.6 + Prom 24236 - 24295 7.3 23 15 Tu 1 . + CDS 24328 - 25596 263 ## PROTEIN SUPPORTED gi|148990506|ref|ZP_01821647.1| ribosomal protein L11 methyltransferase + Term 25601 - 25644 6.1 + Prom 25622 - 25681 5.0 24 16 Tu 1 . + CDS 25823 - 26179 596 ## LCRIS_01977 hypothetical protein + Term 26222 - 26271 11.3 - Term 26217 - 26253 2.1 25 17 Tu 1 . - CDS 26257 - 27117 581 ## LCRIS_01976 transcriptional regulator - Prom 27251 - 27310 5.4 26 18 Tu 1 . + CDS 27213 - 28781 1232 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 27 19 Op 1 . - CDS 28806 - 29075 110 ## COG4115 Uncharacterized protein conserved in bacteria 28 19 Op 2 . - CDS 29062 - 29370 466 ## gi|227878434|ref|ZP_03996374.1| hypothetical protein HMPREF0506_1375 - Prom 29413 - 29472 3.2 - Term 29443 - 29472 -0.2 29 20 Tu 1 . - CDS 29478 - 30647 1254 ## COG0475 Kef-type K+ transport systems, membrane components - Prom 30761 - 30820 6.5 - Term 30824 - 30869 9.2 30 21 Op 1 . - CDS 30882 - 32744 2042 ## COG2217 Cation transport ATPase - Prom 32809 - 32868 3.1 - Term 32837 - 32865 2.3 31 21 Op 2 . - CDS 32873 - 33343 501 ## COG0517 FOG: CBS domain - Prom 33471 - 33530 8.2 + Prom 33832 - 33891 4.9 32 22 Op 1 . + CDS 33931 - 35067 878 ## LCRIS_01970 hypothetical protein 33 22 Op 2 . + CDS 35086 - 35382 229 ## LCRIS_01969 putative protein without homology + Term 35554 - 35605 4.9 + Prom 35397 - 35456 6.6 34 23 Op 1 6/0.000 + CDS 35699 - 37213 1987 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 35 23 Op 2 7/0.000 + CDS 37273 - 38451 918 ## COG1696 Predicted membrane protein involved in D-alanine export 36 23 Op 3 6/0.000 + CDS 38488 - 38727 441 ## COG0236 Acyl carrier protein 37 23 Op 4 . + CDS 38720 - 40006 1343 ## COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) 38 23 Op 5 . + CDS 40006 - 40947 579 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 40948 - 41004 7.2 + Prom 41008 - 41067 5.5 39 24 Tu 1 . + CDS 41263 - 41979 847 ## COG5523 Predicted integral membrane protein + Term 41999 - 42037 6.2 - Term 41987 - 42025 3.2 40 25 Tu 1 . - CDS 42051 - 43001 1263 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) - Prom 43041 - 43100 8.2 + Prom 43183 - 43242 7.8 41 26 Tu 1 . + CDS 43387 - 44907 1382 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - Term 44951 - 44987 4.0 42 27 Op 1 . - CDS 45010 - 45246 360 ## LCRIS_01959 hypothetical protein 43 27 Op 2 36/0.000 - CDS 45293 - 47833 2507 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 44 27 Op 3 . - CDS 47843 - 48547 266 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 48568 - 48627 6.4 + Prom 48559 - 48618 9.9 45 28 Op 1 . + CDS 48639 - 49946 894 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 46 28 Op 2 . + CDS 49927 - 50817 712 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold + Term 50948 - 51001 12.5 + Prom 50969 - 51028 9.3 47 29 Tu 1 . + CDS 51148 - 53049 1274 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 53054 - 53123 9.8 + Prom 53083 - 53142 6.0 48 30 Tu 1 . + CDS 53163 - 53795 599 ## COG0681 Signal peptidase I + Term 53800 - 53837 5.0 + Prom 53818 - 53877 7.4 49 31 Op 1 3/0.077 + CDS 53958 - 55307 1252 ## COG1113 Gamma-aminobutyrate permease and related permeases 50 31 Op 2 . + CDS 55380 - 56753 1350 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 56758 - 56796 2.8 51 32 Tu 1 . + CDS 56815 - 57915 644 ## LCRIS_01950 hypothetical protein + Prom 58059 - 58118 7.7 52 33 Op 1 . + CDS 58146 - 59051 694 ## LCRIS_01948 hypothetical protein 53 33 Op 2 . + CDS 59053 - 59532 166 ## LCRIS_01947 YobM related protein + Term 59534 - 59593 5.2 + Prom 59603 - 59662 4.3 54 34 Op 1 1/0.077 + CDS 59692 - 60420 865 ## COG2071 Predicted glutamine amidotransferases 55 34 Op 2 . + CDS 60433 - 61824 1798 ## COG0531 Amino acid transporters - Term 61828 - 61860 3.3 56 35 Tu 1 . - CDS 61889 - 62902 1382 ## COG2502 Asparagine synthetase A - Prom 62925 - 62984 1.6 + Prom 63172 - 63231 5.2 57 36 Tu 1 . + CDS 63337 - 64395 910 ## COG3589 Uncharacterized conserved protein + Term 64399 - 64438 4.7 - TRNA 64472 - 64545 86.9 # Pro TGG 0 0 - TRNA 64554 - 64627 71.3 # Arg ACG 0 0 - Term 64687 - 64733 7.1 58 37 Tu 1 . - CDS 64825 - 65817 1050 ## COG0516 IMP dehydrogenase/GMP reductase - Prom 65904 - 65963 9.6 + Prom 65891 - 65950 10.8 59 38 Op 1 1/0.077 + CDS 66015 - 67304 1634 ## COG0104 Adenylosuccinate synthase 60 38 Op 2 . + CDS 67308 - 68606 1576 ## COG0015 Adenylosuccinate lyase + Term 68613 - 68652 6.8 Predicted protein(s) >gi|227861935|gb|ACKR01000158.1| GENE 1 144 - 1034 591 296 aa, chain + ## HITS:1 COG:SA2302 KEGG:ns NR:ns ## COG: SA2302 COG1131 # Protein_GI_number: 15928093 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 215 3 214 231 190 49.0 3e-48 MLKVNNINIFYGHKEIIRDASFTISPGEIVGLIGHNGAGKTTIMKTLLGLTKFTGSISFN DHEITLKDHLALQSVGALIENPAIYPFLSGYDNLKLYAKDLSGMDKLINRLGMKDYIDRK AKDYSVGMKQKLGIALALLNNPQLVILDEPMNGLDIEATILIRKLIHEYAARGTAFLISS HVLSELQKVMTSVIIINHGRIIINSPMSKFTQEKNPKSKLKTTDIKQTTNLLQQAKIPFD RQDDAVIVDHKDIDKIQKLLFDNEIWIEYLAPTGLTLEQKIVNILRQEQGGDNNEN >gi|227861935|gb|ACKR01000158.1| GENE 2 1024 - 1782 564 252 aa, chain + ## HITS:1 COG:SA2303 KEGG:ns NR:ns ## COG: SA2303 COG1277 # Protein_GI_number: 15928094 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Staphylococcus aureus N315 # 5 252 5 256 256 58 25.0 8e-09 MKINLSHEFYKFAHRKIPLYGILVLLVLMLYTVGTSYKMTPSLLSQGFGAGQWAIIIIIA ISSDMIAMEWRNNTMATLLYKTSHKSILYTAKFIVLVFYSFILLVFGIIFSFILKTLMVG SKFSWHDDYHGHPLINALFLNMGGTMIYLIFIVALSLMLILLIRNNATVIIIGLAIGFLG SDLSNLAMSAFPGLKSILAWNPLNMINIITQLSNNEMVTVTHLTNSELIIANLVYAVVFF WIGALLFKKRSI >gi|227861935|gb|ACKR01000158.1| GENE 3 1799 - 2569 362 256 aa, chain + ## HITS:1 COG:SA2303 KEGG:ns NR:ns ## COG: SA2303 COG1277 # Protein_GI_number: 15928094 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Staphylococcus aureus N315 # 1 254 1 254 256 62 26.0 7e-10 MRAELKQEFYKLGHRKLPWWIISFMILFMIFMGLAMGKQYGNLLVMTCYNSSQIIMLILV IVGSTIFSMEFQNKTILTLLYHAQNKGTVYLAKFITIFIYNLFLHAIAMIVTIFFNTVPL IAKIVPWTATYKYNQSLFINMLSTTGVDIITSTLIISLICLMSCMINSNTVVIMINAIII FMGSSLSSNLLNYNIGPLDIIRWNPLNMLNLTTQYYNYATYHLTSHLSNPQLLIGTLCYI VLFTLLGYLVFRKKKF >gi|227861935|gb|ACKR01000158.1| GENE 4 2856 - 4163 1307 435 aa, chain - ## HITS:1 COG:BH0608 KEGG:ns NR:ns ## COG: BH0608 COG2252 # Protein_GI_number: 15613171 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus halodurans # 7 434 4 433 434 396 56.0 1e-110 MNFIKSYFQLDKYKTNIRTEFIAGLTTFISMSYILFVNPSVLGASGMNTGAVFTATALAA ALGTAIMGIVANYPIGEAPALGINAFFAYTVCIGMHVSWETALASVFVASIIFILITLFK LREKIIDSIPADLKFAISSGIGLFIAFLGLQNGKLIVANKSTLVGLGSLHDPLVWITIFG LLVTVILMILNVPGAIFIGMVLAAIFGICTGQIALPHKVISTAPSLAPTFGQAIFHVKDI NSVQMWVVVLTFLLVTFFDTAGTLIGLAQQAGFMKNNKMPRVGKALAADSSAMAVGSILG TSPVGAFVESSAGIAVGGRTGLTAVFVAIFFLISMIFSPLLGVFTSQVTAPALIIVGVLM AQNTAHIHWNKLEIAVPAFLIILGMPLTYSISDGLSWGMITYPICMLAAKRGKEVTPMMW VLFVVFLIFLWVLNF >gi|227861935|gb|ACKR01000158.1| GENE 5 4392 - 5192 914 266 aa, chain + ## HITS:1 COG:HI0003 KEGG:ns NR:ns ## COG: HI0003 COG0561 # Protein_GI_number: 16271979 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Haemophilus influenzae # 1 262 1 256 262 122 34.0 5e-28 MSAQLIFSDLDGTLINDDLKVTAATRDAIRRQIINGNIFVPASARLPKGMMTVVNQILKV CPFIAYNGALALDETGKVLISRFFNAKEAAEICRYLDEQDNDAAWNIYSGYVWCCSEEKS PRVKNEERIVDVKATPTTINQLEKLQGVHKGLIMGDSADLDRMQEELTAKYPDLTFVRSA ENLLEIVLKGVSKASAVKIVAQEYGVDLQNCIAFGDNYNDEDMLEEVGYPFLMGNAPAEL KQKFAPEQITADNNHDGVAKALAKIE >gi|227861935|gb|ACKR01000158.1| GENE 6 5240 - 5698 483 152 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01992 NR:ns ## KEGG: LCRIS_01992 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 152 1 152 152 207 98.0 1e-52 MMLTVTGGQWFFPLVIICLILGIVATIAQKKKLTKLKRITDNFAYAILVILLIIEWILYF QKQFNFITPAIYTLVVIYLIGRQLLIRYRSSLLKKLGAKYKQLTIGLATIYIILVTLLLL IGSKFSTMGWIIAGLVIVAFGFVSYIFEKDKQ >gi|227861935|gb|ACKR01000158.1| GENE 7 5813 - 6499 971 228 aa, chain - ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 211 1 212 217 241 59.0 9e-64 MTVIVLSGPIGAGKSSLTGILSKYLGTKPFYESVDDNPVLPLFYADPKKYAFLLQVYFLN TRFHSIKDALTEDNNVLDRSIYEDALFFQMNADIGRATSEEVDTYYELLHNMMGELERMP KKNPDLLVHINVSYDTMIKRIQKRGRPYEQLSYDSTLEDYYKRLLRYYKPWYENYDYSPK MEIDGDKLDFMANPDDKEKVLDQITAKLKEMGKLPEDWEKPTDIQIEA >gi|227861935|gb|ACKR01000158.1| GENE 8 6517 - 7251 524 244 aa, chain - ## HITS:1 COG:SPy0121 KEGG:ns NR:ns ## COG: SPy0121 COG1428 # Protein_GI_number: 15674338 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Streptococcus pyogenes M1 GAS # 33 241 2 210 213 222 55.0 6e-58 MKHNQKITCVPQHIVLNLIIVYIWYLRKNVIQVIVLSGPIGAGKSSLTSILAEHLGTQAF YEGVDNNPVLPLYYKDMKRYTFLLNTYLLNHRLAQINQAIQEKNSVSDRSIYEDALFFKM NADSKVADPTEFKIYDDLLDNMMEDTPGNPSKKPDLLIYIHVSLDTMLNRIKKRGRSFEQ ISTDPGLKDYYARLLKYYEPWYENYHASPKIEINGDKLDFVTNMDAQKEVLKEIDEKLHE IGNL >gi|227861935|gb|ACKR01000158.1| GENE 9 7459 - 8178 935 239 aa, chain - ## HITS:1 COG:SPy1399 KEGG:ns NR:ns ## COG: SPy1399 COG0363 # Protein_GI_number: 15675320 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Streptococcus pyogenes M1 GAS # 1 234 1 234 234 281 60.0 5e-76 MKVIVTENKIQGGAKAFEIFEKGIKNGAKVLGLATGSTPETLYQNWVKSDLNCENLTSIN LDEYVGLTPDNPQSYHYFMQKHLFDKKPFKKTYVPDGMAKDVDAFCKEYDQIIKDNPIDI QLLGIGRNGHIAFNEPGTPFNIGTHEVKLTENTIKANARFFDSIDEVPKSAICMGTANIM QSKKIVLMAFGEKKAHAIKKMIEGKVTEEVPASILQKHPDVTVIVDEAAAQELDDKYKN >gi|227861935|gb|ACKR01000158.1| GENE 10 8305 - 8733 445 142 aa, chain + ## HITS:1 COG:AGc3682 KEGG:ns NR:ns ## COG: AGc3682 COG0656 # Protein_GI_number: 15889320 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 5 142 15 151 281 152 50.0 2e-37 MNFEKLTGLGIGSWGLGEDPKKKKDEIAAIRYGLDHGLSVFDTAEMYGDDQSEELIGEAI KGYDREKLFLISKFYPYHATPKLERQSLEASLKRLGTDHLDLYLLHWRGSHRLSDTIRGL QALQKDGLIRYWGVSNFDTADM >gi|227861935|gb|ACKR01000158.1| GENE 11 8746 - 9132 375 128 aa, chain + ## HITS:1 COG:mlr5327 KEGG:ns NR:ns ## COG: mlr5327 COG0656 # Protein_GI_number: 13474445 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Mesorhizobium loti # 1 128 157 281 281 97 40.0 4e-21 MPGGEECFANEDLYNISERGTEFDLQAWQEEHGVNFIGYSPFNSGKGNTIRITRNLKIVA RDHGVTPHQIMLAWTMRNGNVLTIPKASSVEHMKENIATQKIKLTDDELRLLNSDFPMPT DKTPLAVI >gi|227861935|gb|ACKR01000158.1| GENE 12 9237 - 10193 1092 318 aa, chain - ## HITS:1 COG:SPy1225 KEGG:ns NR:ns ## COG: SPy1225 COG1079 # Protein_GI_number: 15675189 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 318 1 318 318 395 67.0 1e-110 MNFVTMMALIVSSTLVYSAPLILASLGGVYSENSGIVNIGLEGIMTMGAFAAIVFNLTFA STFGAATPWLGTLVGGIVGLIFSLLHAVATINFHADHVISGTVLNIMAPPLGVFLIKAIY DKGQTENITANFGYFSFPGLSSIPIVGPIFFKNTSAPAWIAIILAILMWWILYKTRFGLR LRSCGENPQAADTMGINVYGMRYAGVLISGFMAGLGGAVFAQAISGNFSVSTIVGQGFMA LAAVIFGKWNPIGAMLSSLFFGFAQSLSIIGHQLPGIDQIPSVYMQIAPYVITIIVLVLF LGKSVAPAADGVNYIKSK >gi|227861935|gb|ACKR01000158.1| GENE 13 10193 - 11350 1108 385 aa, chain - ## HITS:1 COG:SP0847 KEGG:ns NR:ns ## COG: SP0847 COG4603 # Protein_GI_number: 15900734 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 7 354 1 346 352 311 48.0 2e-84 MQQLIKVTPKVKNILVPVISVIAGFIVGAIIMLIWSYNPFQAYSSMFSSALGNMNGIGET IREATPLIFIAIGFAIASKAGFFNIGLPGQAQAGWLTSIWIVLANPQLPKPVLLPLAIIA GAIAGAIVAGIAGYLRAQFGTNEVITTIMLNYIVLYTCQYLMQQVMSSKLRIDTDTTKTI PANGSLKLNWLTSMFGDSRINAGIFLAIIGLIFYWYLMKKTTVGFEIKAVGLNPFASRYA GMSSKKNIIISMLLSGAFSGLGGVVQGLGTYQNYFTQTTSLDIGWDGLSVALLGGGTAIG ILLASLLFSILKIGGLGMQTIAGIPYEIVSIVIAAIIFFIAINYVIGLLFKTKKNRSDYY IPTRKEKGPNNGVDGPGRKVIEGEK >gi|227861935|gb|ACKR01000158.1| GENE 14 11334 - 12872 1654 512 aa, chain - ## HITS:1 COG:SPy1227 KEGG:ns NR:ns ## COG: SPy1227 COG3845 # Protein_GI_number: 15675191 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 8 511 5 510 510 577 61.0 1e-164 MKEQRNKVIEMRHIVKDFDGFKANDDINLTLYQGEIFALLGENGAGKSTLMRILSGLLEP TSGEILVNNQKVNIKDPTVAKKLGIGMVHQHFMLMDSFTVLENIILGHESTKGPVIDLKK ARKQVLALAQKYGFAINPDAKISSITVAQQQRVEILKVLYRGADILIFDEPTAVLTPQEI SEFIKVLKNLAKEGKSIILITHKLEEIKAVADRVTVIRRGHDVGTFAVDQVSDERLAELM VGRHVNMKLTKPAPNLGKQILAIKNLQVKGNHGALSVKDLSLSIRGGEILGLAGIDGNGQ DELVEAITGLRHVKSGQILINGQNLTNQKVRKITEAGVAHIPADRQKYGLILHMSLADNL ALQTYYQRPFSNHGIINHQAILKHAVDLIKKFDIRTTSPALPASDLSGGNQQKAIIAREL NRNSDLIIAFQPTRGLDVGAIEYIHKQLLAQRAAGKAILLISYELDEIMQLSDRIAVLHD GQISGEVLPEKTTDQELGLLMTGVKKEDATID >gi|227861935|gb|ACKR01000158.1| GENE 15 13059 - 14039 1369 326 aa, chain - ## HITS:1 COG:L61620 KEGG:ns NR:ns ## COG: L61620 COG1744 # Protein_GI_number: 15673420 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Lactococcus lactis # 3 326 1 318 350 251 48.0 1e-66 MNVKFKKILSFGVVLASVGLILTACSGKKSGQSANKDTKHGIALITDENGVDDHSFNQAA WSGFKAYGKEHGLKQGKGGYQYFQSSSAADFTPNFDQAATAGYQTIFGVGYQLADAVKQA AKKNPKKNFVIIDSVDSGIKNVASATFESNQASYLGGLAAAYTTKTNKVGFIGGAKSSII DLFEAGFKQGVADGAKALHKKISVQTQYIGNFTSTDKAKSIAQSMYANRADIIYQAAGNA GNGVFQEGKDYNQARPAAKKVWVIGVDVDQSNLGNYKSKDGKKENFTLTSVLKGLDVATK SIANDAYNGKFPGGKHLVYSLKGNGV >gi|227861935|gb|ACKR01000158.1| GENE 16 14180 - 15274 1147 364 aa, chain - ## HITS:1 COG:L61620 KEGG:ns NR:ns ## COG: L61620 COG1744 # Protein_GI_number: 15673420 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Lactococcus lactis # 6 357 3 347 350 277 46.0 3e-74 MNKKVKKLLSIGVLALSLGAILTACSGKKQGASNNKSSDAKHSIALIADGNGVNDNSFNQ SAWEGFQSYGKEHNLSRGRNGYQYFQSSSAADFTPNFDQAAKAGYQTIFGVGYSLKDAVA SAAKRYPKKNFAIIDDVIKGQKNVVSANFKSEQASYLAGVVAAKETKTNTVGFIGGAHGD IVDLFDAGFTQGVKDQAKKMHKKVTILNQYIGNFTSSDKAKSIAQSMYTKKADIIFHAAG GAGDGLFQEAKAINQTRPAKDKVWVIGVDVDQSHLGNYTAKGGQKSNFVLTSVITGVNVA VKDIANRAYNNKFPGGKNLVYGLKNNGVSIERGQISASTWKDAQIARANILKGKIKVAIH PNNK >gi|227861935|gb|ACKR01000158.1| GENE 17 15580 - 16185 762 201 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01982 NR:ns ## KEGG: LCRIS_01982 # Name: not_defined # Def: membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 201 1 201 201 313 99.0 2e-84 MRREETKRLAITAVFAALLIVQTFVPNVGYVRIIPALPAVTTIPMTIAVYGTLMGQKAGL GFGLFWGITRLIVAYTQPGDMVSLMLFQNPVISLVPSILAGYFPGIIAKGMSKTKYAKLG YIISGAVTSLTNTVMVILLTSIFFMHDPASLTHYLGNYSSGTPLILILIMALGMNGLVEA IFTAIVVPVIVTPLNLVMKKA >gi|227861935|gb|ACKR01000158.1| GENE 18 16277 - 19015 2509 912 aa, chain - ## HITS:1 COG:SPy0608 KEGG:ns NR:ns ## COG: SPy0608 COG2352 # Protein_GI_number: 15674689 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxylase # Organism: Streptococcus pyogenes M1 GAS # 1 912 1 920 920 1058 59.0 0 MTVKKLENNSDVNVVAEESKVLTDLLNESTKQVIGQAAFDKIQNLIKISAAKDYQELEKQ IASLNNREMIVVARYFATLPLLINISEDVELASKVNVLNNTHQDYLGKLSDTIDIVAQKK NAEEILEHVNVVPVLTAHPTQVQRKTILELTDQIHQLLRNYRDVKNGTIDRDEWTEQMRA CIEILMQTDIIRGHKLKVANEITNVLAYYPKALIPAITKFTSRYKELAKKHGLNASHATP ITMGMWIGGDRDGNPYVTADTLELSATLQSQVIFEYYIKQINKLYRAISMSTSYMEPSDD VMHLSELSNDDSPFRTNEPYRRAFYYIQSRLVHTEQKLLNITNKNTFLKKRDLQNLDKIP CYQNAQEFKADLEIIKNSLEEDHDHAVVDSYFTQILEAINIFGFHLATIDMRQDSSVNEA CVAELLKSAGICDNYSDLSEDKKIKLLLNELNNDPRNLHANNKPKSELLQKELKIYKTAR QLKDRLGEDVIKQHIISHTESVSDMLEQAIMLKEYDLLDNQKARIQVVPLFETVEDLNNA REIIKEFLSFDIVKKWLVSQNNYQEVMLGYSDSNKDGGYLASCWNLYKAQKDLTKIGEEM GIKITFMHGRGGTVGRGGGPSYEAITAQPFKSINDRMRMTEQGEIIQNKYGNKDTAYYNL EMLASATIDRMASKQIVSEDHVADFRSSMDQIVAKSNEVYRKLVFENPNFLKYFFQATPI KEISGLNVGSRPASRKKLTDFSGLRAIPWVFSWSQSRVMFPGWYGVGSGFKSFIDADPAN LKELQNMYQGWPFFHSLLSNVDMVLSKSNMRIAKQYADLCEDEQVKSVFDIINQEWELTK KVILQIEGHDELIEDAPTLKKSLEYRMPYFNILNYIQLEMIKRDREDEIQGVYQSIIPIT INGVASGLRNSG >gi|227861935|gb|ACKR01000158.1| GENE 19 19122 - 21461 2223 779 aa, chain - ## HITS:1 COG:L119891_1 KEGG:ns NR:ns ## COG: L119891_1 COG1136 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Lactococcus lactis # 1 287 3 289 290 233 40.0 1e-60 MLQLKHIFKSYKVGDNITHALDDVTISFRDQEFVAILGPSGSGKTTMLNVIGGLDRYDQG DLIINGKSTKNFKETDWDAYRNNTVGFVFQNYNLIPHLSIIANVELGMNLSGVPKKQRHE KAIAALTEVGLKDHLNKRPNQLSGGQMQRVAIARAIANDPDILLCDEPTGALDTETSVQI MKLIKKLSKDRLVIMVTHNPELAKEYATRIVNFQDGKIRHDSDPFSPNKEEDKFNLKRTK MSYWNAIKLSFTNIMTKKGRTLLTAFASSIGIISIAVVLAISNGFQKQINTTMSKALAKY PISISQTATDITSANARKESDKNVKNRGYVTAEQDQSEQAQHVNKISTKYVNYIKKINPN YANNVSYQRGVSLNLLAKNKGKIERVQFSNTDPDQTNSVLAARSQAMSSMGLGSSVFPTT LNKEKDSFLKQNYQLLSGTWPTKATDLVLVTDNKNTVNINALKNLGFDLKNKEHVKFGQL VNKQFRVVANNDYYQQLPTGMFIPKKVNNAMYNGAQTKLKIAGVIRPKNEDSMALLSTGI AYSDQLSQRVINENKNSAIVKAQKKSNHSVLTNQKLNANEKKATMQTLGGTSIPTGIMIY PNNFDDKDKVLDYLDKWNKGKKKSDKILYTDMSNAVTTMTGGLLSGITTILVAFAGISLI TSMIMIGILTYTSVLERTKEIGVLKALGARKKDITRVFDAETFILGVFSGVLGILIAYLL TFPINSIIYKITDLANVAQLDPTAAIVLIIISTILTLLGGHIPARMAAKKDAAIALRSE >gi|227861935|gb|ACKR01000158.1| GENE 20 21494 - 22579 950 361 aa, chain - ## HITS:1 COG:lin1003 KEGG:ns NR:ns ## COG: lin1003 COG1434 # Protein_GI_number: 16800072 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 95 359 80 342 344 177 42.0 4e-44 MLNQIIAFLGRRGEFFYISVFMLLIFFAFLISWLIEPRRLINGVLFTIFIVSMLSWITVM VHKSTSHGLQRAYDLLVLAALFGIVLLLIFAWIFLFWNAYFVWKYESHTLPNLLTLITGF LALIISIIVLLGPGKYLPRWLSLALASIPAIAIYLGLVLYNFLVNLLLYQIYPRTYHQDY LIVLGSGLINGDQVSKLLAARINRAIQYSNRQYQKGRKRPILIMSGGQGADEKISEALAM SRFAQRRGVSVDRILLEDQSKNTYENMLFSKRIATKDFGNSHFRARFFSNNYHIFRAALL AKEVGLKANGVGAYTRFYYLPNAIIREFAGVFVMHKRRHFVIMGLIVLFFILQAILVMTG L >gi|227861935|gb|ACKR01000158.1| GENE 21 22671 - 23324 619 217 aa, chain + ## HITS:1 COG:SP0288 KEGG:ns NR:ns ## COG: SP0288 COG1266 # Protein_GI_number: 15900222 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Streptococcus pneumoniae TIGR4 # 36 216 39 213 230 59 28.0 4e-09 MKRFGHYLGNIAGAVLALVMYSELEVLYFRPQRFDLAQYRVFVTALATVIVLFAISYIYR RQLKEENDWGFDETPHWDWRRIGIAMIGFVLIVVGSIVMLNLVGGGVSKNQESLNKIAEY NAGLFRILVVFIAPFCEEHIFRGMFFNIFFTKKNTRNKWLGIVASGFLFGYMHDPALSKY ILVYWVLGMVLAWVYMSTKDLRYSILVHMCYNALGFI >gi|227861935|gb|ACKR01000158.1| GENE 22 23353 - 24222 855 289 aa, chain - ## HITS:1 COG:no KEGG:lhv_1911 NR:ns ## KEGG: lhv_1911 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 284 8 286 289 177 38.0 3e-43 MTIGELLKEKRLAENKTQKAWVGHIISTSYYAKVEKNIHRITAEDLLAILKHNDLSITDF FEELADKKDELKAQVNSLNKTVIDAVCHSDVSKVNEVIQIIKKMDLPTKQKQELILINKG FIETIKNDLSDNYQPDKNIVQQLKDKIFSIPNFNRFKLELYTNFMQFYDYTTNIMITKQV IHKIDQFKSDKELLAIAGILFNLLSQLVEEHHYQETAPFIAASEHLPFLPDLYFPQTGIS LLKYLISYHFNKKTADLAKAEMIAQTYQITGLEDLGKGAQEIINEVKED >gi|227861935|gb|ACKR01000158.1| GENE 23 24328 - 25596 263 422 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148990506|ref|ZP_01821647.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae SP6-BS73] # 1 379 1 385 415 105 25 5e-22 MNVFLKNADFRRFSVASFLSGAGDILFYLAFMTYASKLQNYSLALSLIAISESVPKLFEI FGGYLADKTKKKFRNIFLAAFVRFILYGLVGLLFITKMSQWNLVLIIVVVNFLSDTIGSY SGGLVAPLIVDIVGKKEYGNAVGFNGGVNQIISMGAQFIGSALLLVMSYSTLAFVNAGTF LLAGLLFASVGLKHQKDQKPLEKKEVNDQNFFQTMKTSLTQVKKQSGLLTVVLVIALLNG ALDTITPLTTIVLAAHRSTMLIGTYSFTIALFGVVIGAGFALGSMFGPQLFKKLTVFSLV IISASLSIVTTTSIFLGNTYVIMITMFFLAAIAGVASVKMEQWLVTSVDHKILASTVGLL NTILMAVAPIMTTVLTTISGSFNVTVALVTLLVIQVITLIVAIFVSLKTRKVTQNSNEVA AA >gi|227861935|gb|ACKR01000158.1| GENE 24 25823 - 26179 596 118 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01977 NR:ns ## KEGG: LCRIS_01977 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 118 1 118 118 160 96.0 9e-39 MLVSKNLVKVVSIAVASMSLMGVGASVSQAASFTAPKLGVAETMPTDPAIKKGDKIFVAV KDTKNQKVNVLDAQGHKTSQKVSMGSTYTAKDVKKAAGKKIVKINKSQWLNTKDVVKD >gi|227861935|gb|ACKR01000158.1| GENE 25 26257 - 27117 581 286 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01976 NR:ns ## KEGG: LCRIS_01976 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 286 1 286 286 533 97.0 1e-150 MFKYGSIYKQLRKDQEITQTEACKGICSISKLSRWENNQVEVEFSTAIALLRRINITLDE FTHYAAMKTEFTLPDDIITAIKDNDTKVLEKFVQEQLNHYHANKNILELKNIILVCNQLF LMTGKNYLTPADINRIGSYLLHNTVWSKYNILLFANSPFLLNSKIGYQIALRIIHNFHPT ESLNENTTIFMGGLSDTVIALVFKKKLDYAQKILNELKKIGLPFYLMFFSSTLTLLQKII DYCHTLNAQPVLAMIDAIVQLNCMEVAKKWLEIFKDVQQIWPEKEN >gi|227861935|gb|ACKR01000158.1| GENE 26 27213 - 28781 1232 522 aa, chain + ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 4 518 5 526 535 177 26.0 4e-44 MIYKYSSHAKFIMLTILGLIASTQQIIFAYMVQTLTNVGTQRRFGDLAQFLVIVIGAFIA TFIASLIFNRLKTSAIQETNTTLRAGILKGMLGQTSEENTASLGFLTTDFKLLETNRFDA EIEIMMQAYMIVFALGYALCVNWLVTLLFLIGSCLPMLVSNLFQKKIQTAAENWTTANDK YVSHIKNFLAGSTTLNLYNKRDNAVKKNQVLINQLEDALRKMNLLNLDTNSWINLIASLF TFLTPFLVGIYMVVKGQTTLGALFAIVQLSNSFLNPILTILEDRNKLSTTKKIVAKAEKY IAKGKVEKKETNYNFANLQIEDLDLTRKGKELANQINFAVVKGQKVAVIGPSGVGKSTLL QFLLTGKHGHAKEILLNDKKQKPGSFTDLFAYASQSPVIFADTLWFNLTLGANISREKVS EVCQKLGLDQIIAEKGWDYSLGDNADQLSGGQLARIELARAILADRSILLLDEINASLDK KTSDQIHNYLLNSNLTFIEVIHHYESNELQKYDQVIDLGKLG >gi|227861935|gb|ACKR01000158.1| GENE 27 28806 - 29075 110 89 aa, chain - ## HITS:1 COG:MT3466 KEGG:ns NR:ns ## COG: MT3466 COG4115 # Protein_GI_number: 15842954 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 5 87 3 85 85 83 43.0 9e-17 MTKLNLNFNYNAWNEYLEWKKEDKKTSQKIDNFIKECQRHPFTGKGKPEPLKANLSGAWS RQSNHKDRMVYSVTTTELQIWQLKYHYSK >gi|227861935|gb|ACKR01000158.1| GENE 28 29062 - 29370 466 102 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878434|ref|ZP_03996374.1| ## NR: gi|227878434|ref|ZP_03996374.1| hypothetical protein HMPREF0506_1375 [Lactobacillus crispatus JV-V01] # 1 102 1 102 102 159 100.0 4e-38 MLQTPNNIRAVTARDLRNNFKKIADDINDYDTTVIVARPKDKNVVIISQKEYDSWQETSY LLGTKANRDALAEAKQSFENQDQRNKVLTPEEFEALTKDDEA >gi|227861935|gb|ACKR01000158.1| GENE 29 29478 - 30647 1254 389 aa, chain - ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 1 384 1 379 379 254 45.0 1e-67 MHFLGQLILILLTTVLLGQLFARFNMPAVIGQLLSGILLGPAILNWVKPNDIISLFSEFG VILLMFLAGLESDLDLLKKYFKLSFTVATVGVILPVVFMGLASYFFGMRPLEALFIGIVF AATSVSISVVVLQEAHQLHTRAGTAILGAAVVDDILAVVVLSLFTTFSHEGGKSGLTNNF LLNILIEVVYFVVVWLIFKFVAPYFMKASEKIDVDYSVVIGSLVLALTMAWAADFVGLSA VVGAFFGGLAIRQTPQYKEVHSSVSAIGYSVFIPVFFADIGLSMTFASFFKDIWFIIVMT VLAILSKFWAGKYSSEIFGFNKNEGNIVGAGMVSRGEVALIVAQIGINHHLFPEDIYSSL ILVIIVTTVISPFILNYFIKKSQNSTEFM >gi|227861935|gb|ACKR01000158.1| GENE 30 30882 - 32744 2042 620 aa, chain - ## HITS:1 COG:L96595 KEGG:ns NR:ns ## COG: L96595 COG2217 # Protein_GI_number: 15672077 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 606 1 590 593 449 41.0 1e-126 MKNLKRQWKFIVVLIAGAVGLISQFALHSKSLFSIGNLQFPVHAIIIDIIGILMAISLLL EIFHDWKTGRYGVDILAVIAVVSTILIGDVWAEWMILVMMTGGETLEDYATGQANKELRA LLDKTPRIANKLVDGKITEVKVDDLQVGDTVLIKPGQQVPVDGQIVKGTSSFDQSSLTGE SVPVTKNPGDELMSGSVNGDVAVEMKVTKAAKDSEYQSIVALVKSSQAQPAKFVKMADRY AIPFTVISLIIGGVAWAVSGDATRFAEVMVVASPCPLLIAAPVALVSGMSSMSAHHIIVK SGPTLEKLARAKTSAFDKTGTLTENQLIVDQVVTDDKSFDQKELQSLAASVEQQSSHVIA SSLVKATDKDLIHPVTNLKETTAQGVEGDVDGKHVKVGKLSFVAPGHEKLNVTSTAVYVS VDGKFAGYITLKDKMRPESPKTIERLRRQGAEDIMMLTGDHKQVAEKVAKEAGITDVRSE LLPSQKIQAIKDVPKHLRPVVITGDGVNDAPSLTAADVGIAMGAKGATAASESADAVIMV NDISKVNDAVAISKHTMKVANIDVLTAIGVVIIIELIAFTGVIPAFWGAILQEVVDMITI SLGLLAKTKPSDKQFGLEEK >gi|227861935|gb|ACKR01000158.1| GENE 31 32873 - 33343 501 156 aa, chain - ## HITS:1 COG:lin1008 KEGG:ns NR:ns ## COG: lin1008 COG0517 # Protein_GI_number: 16800077 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 144 1 143 150 95 41.0 3e-20 MFSPSIKHLIEEKSGSFLIPASRIAFVQADNPLYHAFLILTKVKYSKIPVLDKEKRVVGL LSLEMITDKMLTTDEISTAPLDKLKVEDVMQTKFDKINFVETTLETQLHLLINNAFLPVV DDRGVFQGLLTRREWIKAFNYVVHTYDKHYETKRIK >gi|227861935|gb|ACKR01000158.1| GENE 32 33931 - 35067 878 378 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01970 NR:ns ## KEGG: LCRIS_01970 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 378 1 378 378 691 94.0 0 MKKIGKRILRFLLVLLLLAGIGAGGYFGYQWWQKQEMIRQRPKEKIAKDGTSTSPAWHNF ANYQKALREKYPFINKVANYVPPRTWDGKDFVLPGLVATKSYDFKTKKVNTATAMTPQGI TVAGKYILLTAYDGEHEHASVVYVLDKKTGKYLKTIQIPGRPHLGGIAYDPVAKNIWITG SMGKSSALAAFSMAELRAYKEGSQIPIKYKYQIAIPAVEKASTVTYYDGQLFVGFFNMYG RGKVAAYTIARSGKNRGSITNNEVKSVTGTLQWSDPTGETSMDKQIQGIAIYQNKIFLSQ SYGSGDSKLYVFPTSALNALDEKNAELVITMPPYLEQITAYKGQLLCVFESGSKIYARPE IVVMDRILSVNINALFGS >gi|227861935|gb|ACKR01000158.1| GENE 33 35086 - 35382 229 98 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01969 NR:ns ## KEGG: LCRIS_01969 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 98 1 98 98 149 88.0 2e-35 MKVDYRKKEIFLLRFSGWFCLFPATTYLYLWQNTHLIFCLVEVIVIALFAAFLLATAKSK MWTKPQNVWRLMIFALIFVAIVIFIPLFFAYRDCKRQQ >gi|227861935|gb|ACKR01000158.1| GENE 34 35699 - 37213 1987 504 aa, chain + ## HITS:1 COG:SP2176 KEGG:ns NR:ns ## COG: SP2176 COG1020 # Protein_GI_number: 15901986 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 2 504 6 515 516 478 48.0 1e-134 MIQDVIKKIDEIAANEPDRVVYDYLGETNTYGDLKKRSNAWAHKIASLDIPEHAPIMIWG GQTFEMIASFLGCVKSGHAYIPIASYSNAERLTMIQDVSKSPLVLEIDPLPEVDLTDVKV LKASEVEDDNFEVDEKNFVEGDENYYIIFTSGTTGKPKGVQISHDNLLSFVNWELSDFNL PEHPSFLAQAPYSFDLSVMSLYPALVSAGKLVVLPHDVTQNFGKLFQTLPKMQFNVWVST PSFAQMCFLDKTFDAEHHPDLSHFLFCGEELPHSEAEMLKKKFPDSHIFNTYGPTETTVA VTQVEITDEVLKKYDRLPIGKVKEDTKITIDTSKGDKPGEGEIIISGPSVSKGYMNNPEK TEAAFFHEDGAEYRSYRSGDAGFFDGDMLFYRGRIDFQIKFNGYRIELEEINFYLTKNKL VRYGVAAPKYNKDHTVKQIVAEIELKEGVRRQYSEAALTKMIREDLAKNIMPYMIPQRYI YQDALPISQNGKVDIKAVIKEVNK >gi|227861935|gb|ACKR01000158.1| GENE 35 37273 - 38451 918 392 aa, chain + ## HITS:1 COG:SPy1311 KEGG:ns NR:ns ## COG: SPy1311 COG1696 # Protein_GI_number: 15675260 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Streptococcus pyogenes M1 GAS # 1 389 24 413 418 322 46.0 6e-88 MIALIPIIIGLYYGHRLKTYEAIFSIVFLFLIFDGDHWEQGVNLLIWLVYEFALTFAYQY YRHHGKNKTWIFSLAVILAIIPLAAVKYLTAFPDNSIGFVIGFLGISYVTFKTVQVIMEM RDGAIKKVDPVTYARFLLFFPTISSGPIDRYRRFKKDYDKVPTRDAYITDMQYAVRYLFQ GFLYKFVIGWFFGTYLLPKISAAALAVGNANGGLKLSWWLVAYMYCHSMYLFFDFAGYSL FAVSISYFMGIHTPMNFNKPFISKNIKDFWNRWHITLSFWFRDYIYMRFTFFAMKKKMFK NRIRLSQVSYFLLFLIMGFWHGLTWYYIVYGIFHASAICINDMWLRFKRKHKKQIPSNKF TKWFAIFLTFNVVCFSFLIFSGFLSQLWFGWK >gi|227861935|gb|ACKR01000158.1| GENE 36 38488 - 38727 441 79 aa, chain + ## HITS:1 COG:SP2174 KEGG:ns NR:ns ## COG: SP2174 COG0236 # Protein_GI_number: 15901984 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Streptococcus pneumoniae TIGR4 # 1 78 1 78 79 70 47.0 9e-13 MDTKQGVLDILNDLTGEDLSDQMDENIFDNGLMDSMASVQMLLNLQEKFDIDVPVSEFNR EEWDTPNKIVAKVESLENE >gi|227861935|gb|ACKR01000158.1| GENE 37 38720 - 40006 1343 428 aa, chain + ## HITS:1 COG:SPy1309 KEGG:ns NR:ns ## COG: SPy1309 COG3966 # Protein_GI_number: 15675258 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Streptococcus pyogenes M1 GAS # 5 415 3 416 416 325 42.0 1e-88 MSNKRRLWQIFGPVLCAFILLLVVFLIPWERTFSKQTIYEAAASQNTTVFKGSTMKQEAF EDGYVPFYGSSELSRFDPLHPSVIAEKYHRNYRPFLLGGPGSQSLAQFLGMQGTAKQLRN KKAVVIISPQWFTKRGQDPNAFALYYSPLQACNFLLSAKNNKTDRYAAKRLLEMPNVKGE IKNSLKQIAQGKKLTSFQKFYLQNRRRMLRNEDNFFSSFQLRDRVNKIQKRAKVLPNKYS VAALNKVAAEQAAIHTNSNNLGIDNTFFRTRLPKKVLKRLKGSQRDFDYVHSVEYGDFQL MLEQFAKQHTNVLFIIPPINGKWMKYTGLSSKMYQESVAKMEHQLTSQGFENIADLSRRG NEKYFMQDTIHLGWKGWVAVDQAVRPFMKEPNKRYDYDMSNYFYSKKWQNKDNVKRVDLS NKDRLKAE >gi|227861935|gb|ACKR01000158.1| GENE 38 40006 - 40947 579 313 aa, chain + ## HITS:1 COG:BS_pbpX KEGG:ns NR:ns ## COG: BS_pbpX COG1680 # Protein_GI_number: 16078758 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Bacillus subtilis # 5 303 90 384 391 103 25.0 4e-22 MRQAIDHVGVKGSVLVINHGKVLLNYATDNKPDTSYLINSVQKSMTAAMVMHEVEKGKLK LSDKLSKFYPNVDGASSVKISNLIDMTSGLDLKAGQQLGTPEFISDEANIKHDAQYTVFD ASKLGKWHYTSVNYIFLCGILSKLEKKSYEQLFHDTYIKPLKLTHSEFLWSDKAKLLASH WVPGYEMREGEYVKVNHAKAVKDAHNELGAGSIVMSNADLAKTMQYILAGKILTNKSRKV LFKGQAPSYYNGGLYNLKHYKAANGAGEGYYTFMRATKDGQNMIILQDNHTASGEFKKIK KKINRAMTMMLEF >gi|227861935|gb|ACKR01000158.1| GENE 39 41263 - 41979 847 238 aa, chain + ## HITS:1 COG:lin0656 KEGG:ns NR:ns ## COG: lin0656 COG5523 # Protein_GI_number: 16799731 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 4 204 2 164 345 89 32.0 5e-18 MATTRKELKEQARDQLRGNWGWAVLLSFVGWLIVYILTDIENFFEKGEDIVYGIVRRFGN NAELMYLDKVRVNPFAWLITLVVSVAIGLITWGVIYTILHFRDSGTKENVLSGIFSPFTR NFKSNFLTYILYEIFLILWTWLLIIPGLIKAYSYAVTPYILRDMLDSGHEPTATEAISAS RKLMDGHKMDLFIFDLSFIGWWLLGIISCGIGLLWVNPYYRQAKANFYRNLAGEQFAK >gi|227861935|gb|ACKR01000158.1| GENE 40 42051 - 43001 1263 316 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 48 249 157 348 444 107 35.0 4e-23 MSFKKKIITKLAYVAMLSTTGVAAAAIVQPQAHVQASTTSVAARSLGIDVASYQSADLSA HAKSGAKFAVVKVSEGTSYRNPKASAQIASARAKNMMPMGYHFATFSANSAAAKNEANYA IASAKAVGLGAGSYLACDYESGDGNNIYGGKNPTANAINAFMSKVKAAGYKPLLYASSSV LRNNINTNSVVNKFPNSLWVAAYAVSGRVDNPNFDYFPSMKGVSIWQFTDNWRGLNVDGN INVLPLTSSGSAVSQAPKKARVLKKKAHVYNKAGHRTGKTIKKGTSITTHGKKKTINGKK YYKIAKNQYIRSANLY >gi|227861935|gb|ACKR01000158.1| GENE 41 43387 - 44907 1382 506 aa, chain + ## HITS:1 COG:SP1529 KEGG:ns NR:ns ## COG: SP1529 COG2244 # Protein_GI_number: 15901374 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Streptococcus pneumoniae TIGR4 # 11 493 37 516 529 216 32.0 9e-56 MLGSYHNQLNAQALFNSSYTPYALFLSIGTAGLPSVIAREVSQLNSQNRYKDSLYITKLG FAIMLVMGIACGILLYVTAPMIAKNSPVDSVASATISIRVLVPAVVILPSMSMVRGWFQG NNDMKPYGISQLWEQFARILFILLATLLIIEVFHHDYVTAVYFSVFGACVGAIASYLYLF AYMRKQWGHYRELIENSEPRALNNVSRSLLNLWYASIPFVLLGSFITVTQLVDQLLFKQI LISFSHMSKSYVSYLYTIFSANPSKITTVIISLATAVSETSLPLLAGLKYKANDSQESIR KLLLENYRLLLFVLLPVVALGAFAASPIYTVLFSHDSLGAYYLVENIVQSLFAGLVMNSL TLLLALNMNKLAVIYMVEGVLVKIILQVPMTMFMNGDGAILSTDISFLLVIWLSYHKLNK TYGVKMGSLLPIIVSNEIYIILLFVYQILFGYRFNDLGRVGSFGYLAIFGLVFLGIYVLL ANWMKTSETIFGKKIGYRYYRYKHFE >gi|227861935|gb|ACKR01000158.1| GENE 42 45010 - 45246 360 78 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01959 NR:ns ## KEGG: LCRIS_01959 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 78 1 78 78 112 100.0 3e-24 MPRKHFELNSDVNKLIEKYDEINNVDFNKLVNKALRFYLVNQMNYKDVQDALNKADNEAS KYIDEAMRSSMGDINRNY >gi|227861935|gb|ACKR01000158.1| GENE 43 45293 - 47833 2507 846 aa, chain - ## HITS:1 COG:L111162 KEGG:ns NR:ns ## COG: L111162 COG0577 # Protein_GI_number: 15673086 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 3 846 6 896 896 676 43.0 0 MQKTILWKDAWQAITHSLDRYIAIILLIALGTFAFTGLKMAGPDMRATGAEFFAKHNLAD VTVTSNYGINSTDRLTIQNLPEVKEATFGYFQDVKIKNQPDTLRIFSQSDNLSSYELIKG HFPKNKTEIALSYLLQKKYRLGQNITFNKPGILKNKTYKIVGFVKASEFLDKNPIGQTNI GSGHLTGIAVANHNAFAAPVYQIARIIFKNTANLSPFGIAYRNRVYNDQTKLQTALNQNR ADKYDKYRAMYQKQYRQAAAKQLLKRGIVVNPAQIKVPQNKLKIAYPNYVINSREESQGY ASYRADSERVEVLANVFPVFLFAVAALVSLTTMMRFVEEERTNIGTLKALGYGNGAIAIK FLLYSTSAAILGVILGASLGYTFLPNLIIKAYLASSTLGTDYQLNFAWGPLLISLTIALL ATTVVSMITLAQTLREQPSALLLPKPPKNGSRILLEYIPFLWKHMSFSAKVTARNIFRYK SRMLMTILGVAGCTGLLVMGFGIRDSLHGIGNIQYSEVQKNDVIALKNRHVNTTERQKLN KIFTSHDVTQTTAVQYQQLTKHLDSTGATENVMLIAPQSTKNFSKSINLQERQSKKKLVL SNNGVVISEKLATILHAHKGSTISLKNEHGKLLKFKVSGICEMYLGHYIFMSPAEYAKET GKKFTTNAYLVTMAKHSPGNISHISQKMIKTGAIETVVSTSSNRKLLSSFTGSLNEVILI LILISGMLALVVIYNLTNINVAERIRELSTIKVLGFYDNETTMYIYRETIILSALGIIVG FGFGWWLHHFIITSLPPDVAMFDPNMYPLNFVFSALIPAIITAILAIVVHHKIKRINILD ALSSID >gi|227861935|gb|ACKR01000158.1| GENE 44 47843 - 48547 266 234 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 199 1 200 223 107 35 2e-22 MMAYINLKNNTKIYQSGDTTIYANKNITFSIDKGELVIILGSSGAGKSTLLNILGGMEPN TSGDVIVAGKNIAKYNAKELTTYRRNDVGFVFQFYNLIPNLTAKENVELAAQIVPDAMSA DDALQYVDLGQRENNFPAQLSGGEQQRVAIARAIAKKPALLLCDEPTGALDYKTGKRILK ILQNMSRQNGSTVLIVTHNAAIAPIADKVIRIHDGSIQKVQHNLHPADISTIEW >gi|227861935|gb|ACKR01000158.1| GENE 45 48639 - 49946 894 435 aa, chain + ## HITS:1 COG:lin2906 KEGG:ns NR:ns ## COG: lin2906 COG1455 # Protein_GI_number: 16801965 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 25 415 35 425 450 119 24.0 1e-26 MVNRITNIFLKLRRLAIFRIFQRTLVMLMPIAVIGAYFKLFRDAVFSPDSFIYNIFNFDI TLPDRFWYAGAFVSRGMVRVTFGLFGIYAAYFAARYTARLYRKDSTMAGMTAVIVIMFCA YANNLANNASDHSPFSSSVLKINAVLLALLIGYGVGQIFHWLGKEHKPVDFEHAARIKER AWNAFIPTIFAIFCGIVLGIIIYEFQIKFLNSSTFKGLVTQIQESNNILLIALLTIPVFL LSWMGIGYPLASLSTTSNSISAAANLNFALKHGSAWNVPYKYLGSSLFYPYAEMGGASIV LAMIVIILIYSKNKDSENIAKVNLLPAALGSTGGMMVGMPIILNPLLLPAIVIIPIINIL LAAGAIFCHLIQPCAYPVLSGTPGILVSFFGSNGDWSNLVFSILLFILDIIMFIPTMKLG LRLERGLKDYEEKND >gi|227861935|gb|ACKR01000158.1| GENE 46 49927 - 50817 712 296 aa, chain + ## HITS:1 COG:lin2722 KEGG:ns NR:ns ## COG: lin2722 COG4814 # Protein_GI_number: 16801783 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Listeria innocua # 52 272 42 270 291 96 27.0 7e-20 MKKKMINLVQNPNFKWLAIVLVLLVALAIPGYSWMKADNHARAERRKSLLSPVIMIPGSS ATTERFNQLVKQLNQNTPTKHSVLKIKVSTNGTLSYSGKINKNDNEPFIIVGFENNHDGY SNIKKQASWFDQAFYALSESYKFNNFKAFGHSNGGLIWTYWLEHYYCYYSDEIKIKRLMT LGTPYNFGEKNINHKTQMLENFIKNKDKLPKNLIVYSLSGGKNYESDGIVPEASVAAGKY IFQNQVKSYTAMTVTGVEADHSDLPQNKQVIKVIKQYFLGPRKLSEPQNTGQAKGQ >gi|227861935|gb|ACKR01000158.1| GENE 47 51148 - 53049 1274 633 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 25 626 143 754 815 495 43 1e-139 MAYFDNDFDNLFNELNSSFFNDDFGSRRNSKGSSGSIPINYSSSMGAAPQTIQQNPQQPN EKPIGVDLVEEAKNNKFDPVIGRDEQIDNVIEILSRRKKNNPVLIGPAGVGKTSIVEGLA ERIASGNVPAKMANMHIISVNINDMVAGSSLRGSFEERLKKVIDKAKSDPNIVLFIDEIH NIVGAGSTDSENNNGDAANILKPALASGQLKLIGATTTSEFQRIEKDPALSRRFQAVQVP EPSTDVAVKILEGLKKKYEDYHHVKYSDDSLKLAVELSERYIQGRYLPDKAIDLMDEAGA KKALLVQSTDEKSLKNQISALEAKKTEAAKAEDYDKASEIKSKIAELEKQLKNVDSKNTP EVTEKDIYAIIEQKTKIPMSELHADEAQKNLDLAKKLKKNVIDQDRAIDVITDAIARKQI FKDSDRPTGSFLLTGPTGVGKTELAKQLAIQLFGNKEHLIRLDMSEYQDEMAVNKLIGSA PGYVGYGEGGQLTEKVRHQPYSLILFDEIEKANPQVFNALLQIMDDGRLTDAQGRTVSFK DTILIMTSNAGFSDKLLEDGKVDQDKLISALENYFRPEFLNRLDAIVPFNSLTEQDMGKI INIYLKKMSHVLAKKGVTVEVSDEAKTEDKKED >gi|227861935|gb|ACKR01000158.1| GENE 48 53163 - 53795 599 210 aa, chain + ## HITS:1 COG:lin1308 KEGG:ns NR:ns ## COG: lin1308 COG0681 # Protein_GI_number: 16800376 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 34 197 30 179 188 117 40.0 2e-26 MAEKKEEKESWGKFFLDILIIWVILIGAYLLLFHFVLSNDTVSGLSMQPTFQNGDRLIAE RHAQIKRGEVVIVKAPDEPGALYIKRVIGLPGEKIVSKNNQIYINNKKIAQPWLKQGTKL IDNGSDTFYSETQNFTMQSLMRARTYQQYFTRAQIKYVQDTGRIPKGTYFVMGDHRSVSK DSRYIGTIKRSSIVGVVKVRYWPLNQFKVY >gi|227861935|gb|ACKR01000158.1| GENE 49 53958 - 55307 1252 449 aa, chain + ## HITS:1 COG:BS_ydgF KEGG:ns NR:ns ## COG: BS_ydgF COG1113 # Protein_GI_number: 16077629 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Bacillus subtilis # 7 445 15 454 458 439 51.0 1e-123 MDEKPRLKRGLKSCHVTMIAIGGAIGTGLFLGSGSAIHSAGPSIILSYLIVGIITFFMMR ALGELILADPDSHSFLESIKKYLGKRAEFVAGWMYWACWLSLAMADLTATGIYLRYWFPW LPQWVGPLVIVILLMLINMVNVGLFGELESWFSMIKVMAIVVLIITGAVMLLLHTHVKGG YVSLTNLVNHGGFFPTGIWGFLLSFQMVVFAFVGVEIVGQTASETANPQKDIPKAINTLP VRIGLFYVGSMLAIMSVYPWNHITTTSSPFVQVFTGIGVTAAAGILNFVVLTAAMSATNS AIFSTSRSLYSLARNGHAPKRLGELTKKAIPMNALMTSSLILFVVVALNYLMPAEIFSVV STVSTICFVIVWIMIMAAHIVYRKQNKQNLGSFKMPGYPVTSWLTLAFYIGILILLFFIK STQLALIISILFAIFLAISYSFVRKNDKV >gi|227861935|gb|ACKR01000158.1| GENE 50 55380 - 56753 1350 457 aa, chain + ## HITS:1 COG:SA2109 KEGG:ns NR:ns ## COG: SA2109 COG1113 # Protein_GI_number: 15927896 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 7 456 5 454 459 472 56.0 1e-133 MAKKAPELKRSMTAGQMEMISLGGAIGVGLFMGASSTIKWTGPSVLLAYIFVGVILYIVM RALGEMLYVDPGTGSFADYASEHVHPIAGYLAEWANVFQYIVVGISEVVATTEYLRFWWK GTSDWVAGVIIILFLLVANLASAKAYATLEFWFAMIKVVTIILMILLGFAVILFGFGNGG HPVGFSNLWSHGGFFTGGLKGFFFSMAIIVGSYEGIELIGISAGEVSDPHKAIVKSVKSV LWRILIFYVGAIFVIVTIYPWNKLDSIGSPFVTTFAKVGITAAASVINFVVLTAALSGAN SGIYSSSRMLYKLAHEGEAPKTFGHVSKRIVPSHAIIGITSGIFVGFMLNVLAQFLNKSL ANVFVIVYSSSVLPGMVAWFVILLAELRFRRKNPHLMENHPFKLPLYPYSNYFALIMLVV IVVFMFINPETQISVAVGAAVLIIAALIYVVKHQKDK >gi|227861935|gb|ACKR01000158.1| GENE 51 56815 - 57915 644 366 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01950 NR:ns ## KEGG: LCRIS_01950 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 253 1 253 254 474 99.0 1e-132 MDNPFNPSFGRIPAVYLQRKKLIADVSQGIENLNSSYTISIVYGMRGIGKTVFLTAMDRK ISAYPDWIVVNLAMGMKLLPSFINSLYLNADSKLKKSFKSIEGLNFSNFGLSLSTDVSKL TYQDILTNMFDEVRKNDVKVLITLDEVKLCQELKDFARCYQLLNRQGYPIALMIAGLSEN ISELKNENITSFLLRGKRIALSALNLSQVEASYSKVFKESGYQVSKKILEKMALMTMGYS YAFQLLGYLVLKAAKKSKVIDQNTLECIKSEYLLVLKQNVYTKVLSSLSKQDRKFVLAMA QSPKHCVSIKEIHERLNRPSNFVANYRRRLLDDQVIKSTNYGEVAFTLPFFKEYVLRQYR FEQGLE >gi|227861935|gb|ACKR01000158.1| GENE 52 58146 - 59051 694 301 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01948 NR:ns ## KEGG: LCRIS_01948 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 301 1 301 301 583 100.0 1e-165 MKYRKLFAFLATIVCFIAINTNAKADSLNDVNKNVAKIANEQNFHSLAQDKLKNENVKKD VPILKNGTVKIHNNFNATSSHYSAYTFLAEIPDTVVKFHTSQEYVDGQFKINFYIDSITG PAPAAISVQLQFYSEPSLSGPITTNTASPIVKEGNITTGLLGSAVFPAATTFFAVGGAWG MVGYNGNSATYPISLSSIYLQNKIGQNFPEYVDPVSKKDAETPINTTWSRLPSSPVWTTM DRYYYIKEFSERYGNQSKEYWAENQVHHIRPRIYGGNNDFDNLMPVPIEAHKLITKWFIN Y >gi|227861935|gb|ACKR01000158.1| GENE 53 59053 - 59532 166 159 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01947 NR:ns ## KEGG: LCRIS_01947 # Name: not_defined # Def: YobM related protein # Organism: L.crispatus # Pathway: not_defined # 1 159 1 159 159 324 100.0 7e-88 MDNIIDNINLISKKCSVDVPIFGFGGVYYCKFKLNPPVAENKINRLSGISVPNDLIEFWI QANGAELFIDSFQGIELGGARCRIYTIEYVLNQLVKTPNYLPILWLRDEGEMGINLDRYN QKQSYLTYPGIEEQYFDFSFKQWLETYLACNGNPFWNLV >gi|227861935|gb|ACKR01000158.1| GENE 54 59692 - 60420 865 242 aa, chain + ## HITS:1 COG:FN0505 KEGG:ns NR:ns ## COG: FN0505 COG2071 # Protein_GI_number: 19703840 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Fusobacterium nucleatum # 3 242 4 241 243 258 56.0 9e-69 MTKPIIGISGSVIIDDRGIFPGYHRSYVNEDYVDSVVQNGGVPYIIPFTENDEVIREQLN HVQGLILSGGHDVDPRFYGEEPMQKIGATWPERDHFDMRLLKLAEENGIPVLGICRGAQI INVAHGGTLYQDLSYRKELTLKHMQGHTPTLPTHSMEVEADSKLAEILGKTEFRVNSFHH QLIKDVAPDLKAVATAPDGVVEGLENKQGNVIAVQWHPEMLHRNSDVAFMNNLFKFVVDN AK >gi|227861935|gb|ACKR01000158.1| GENE 55 60433 - 61824 1798 463 aa, chain + ## HITS:1 COG:FN0504 KEGG:ns NR:ns ## COG: FN0504 COG0531 # Protein_GI_number: 19703839 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Fusobacterium nucleatum # 9 462 1 453 453 360 51.0 4e-99 MTEKTGDKLGFWSIVLLAINAIIGSGIFLTPGSVVQQAGSKALVVYLIAAIFAAILAISF AAASKYVTKSGAAYAYSKAAFGKKIGFYMGVLRYFSASVAWGVMAVGVIKSTISIFGGNP NKAINVTIGFLILMAIITVINLFGQKVVKYVMNLATIGKLAALVLIIIAGVVLLITTGAS SNLGQVDQLTQNGQKIVPTLTTTTFVMSIVSAFYAFTGFESVASGSEDMKNPEKNLPRAI PLAILIIAVVYIGVVAVAMVLNPRALMTTKQVVAIAAIFNNEILRDVILVGALVSMFGIN VASSFNAPRILEAMAREGQMSQALTKRTKNNFPIRTFFISVGLAILIPMAFEYNMVNLIT LSAMVRFLGFIVVPLAVIQFYRGKAKEDILKANKSVMTDVIVPILSGVIVIFLLVEYNWK AQFGVVNAAGQVIGVNWYAIAMMVFGFVLLPLIMAWISRRERK >gi|227861935|gb|ACKR01000158.1| GENE 56 61889 - 62902 1382 337 aa, chain - ## HITS:1 COG:FN0776 KEGG:ns NR:ns ## COG: FN0776 COG2502 # Protein_GI_number: 19704111 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthetase A # Organism: Fusobacterium nucleatum # 9 337 3 327 327 372 56.0 1e-103 MTLILPKDYHPTLTVRDTEAAIVFIRETFQDKLAEILGLQRMSAPMFVEKKTGLNDNLNG VERPVAFDMKAMPKEDTIEVVHSLAKWKRLALKRYGFGMHEGLYTNMNAIRRDEDLDNFH SIYVDQWDWEKIISKQERNTDTLEVTVMNIFKAIKATEKLVAARYPGSTYRLADHVSFIT TQELEDRWPDLSPEEREDKIAKEEKAVFIMKIGDKLKRSGEPHDGRAPDYDDWQLNGDLV FWYEPLNSKIEISSMGIRVSEESLREQLKKAHCEEREKLPFHQMLLKGELPYSIGGGIGQ SRLCMLLLGKAHIGEVQASIWPEDMVEACEADDIKLL >gi|227861935|gb|ACKR01000158.1| GENE 57 63337 - 64395 910 352 aa, chain + ## HITS:1 COG:L143292 KEGG:ns NR:ns ## COG: L143292 COG3589 # Protein_GI_number: 15673111 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 337 1 338 353 263 39.0 5e-70 MLGFSVYLGHDLTSENYNYLLTMRNSGFTCVFTQLAVPDTDSETILNRLADLTNWCQKLD LKIIADVTADDLQDLGINVNSVEQIKSLSLTGLRVDHGFSTDIIAKLSKEMPIVLNASII TQQNIDDLRYSNANFEKLTAGHNFYPRPETGLDAHWMQKKNEWLKQYGLKTAAFISGNGK LRGPIFAGLPTLEKQRYENPLAAILELKDYDCDHIFVGDPQLTRDAIESITNYQKQGAIT LHLDTDIPELFGNDWHNRPDVARDVVRLKESRKKMFLSTEPQDNIYARPTGSVTIDNHLY PRYEGEIEITKRDLPCNEKVNVLAQVKDYDLPLLKYVDSDTQIIFRRATKGA >gi|227861935|gb|ACKR01000158.1| GENE 58 64825 - 65817 1050 330 aa, chain - ## HITS:1 COG:CAC3471 KEGG:ns NR:ns ## COG: CAC3471 COG0516 # Protein_GI_number: 15896710 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Clostridium acetobutylicum # 10 330 5 325 327 483 70.0 1e-136 MSNYFSMEAFDYDDIQLVPNKGIIKSRRDADTSVKFGNRTFKIPVVPANMESVIDDNLAI WLAQNDYYYVMHRFEPEKRITFIKMMHQKGLFASISVGIKDSEYDFIDELVKENLKPEYI TIDVAHGHSVYVIKMIKYIKEKLPDSFLTAGNIATPEAVRELENAGADATKVGVGPGKAC ITKLKTGFGTGGWQLAALRMCSKSASKPLIADGGIRHNGDIAKSIRFGATMVMIGSMLAG HEESPGNVIKINGKTYKQYWGSASEVQKGAYKNVEGKQMLVPYRGSIKDTLKEMKEDLQS SISYAGGRDLNSIKLVDYVIVKDNIFDGDK >gi|227861935|gb|ACKR01000158.1| GENE 59 66015 - 67304 1634 429 aa, chain + ## HITS:1 COG:SP0019 KEGG:ns NR:ns ## COG: SP0019 COG0104 # Protein_GI_number: 15899967 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 427 1 427 428 595 65.0 1e-170 MTAVAVVGSQWGDEGKGKITDFLSKDAAVAVRSNGGNNAGHTIDINGQTFKMRLIPSGIF AAKDNTVIGNGVVINPEVMFGELENLEKSGIDTSGLRISNRAHIIMPYDIKQDEYQEEAK GANKIGTTKNGIGPTYMDKASRIGIRVCDLLEKDTFEEKLRANLEVKNELFTKVYGKPAL KFEDIFDKYYEYGQRMKKYVTDTSVLVNDALDQNKKVLFEGAQGVMLDIDEGTYPFVTSS NTISGGICSGIGIGANRLDTVIGVCKAYTTRVGAGPFPTELLDEVGDRIRETAHEYGTVT GRPRRVGWFDSVALRHSKRVAGINGLSLNLLDVFSGFDKIKICTAYELDGEKIDYYPASL KELYRCKPVYEELPAWDEDITQVKTWDALPENAKKFLNRVSELVGVPLVTVSVGPDREQT IVLKNPWEM >gi|227861935|gb|ACKR01000158.1| GENE 60 67308 - 68606 1576 432 aa, chain + ## HITS:1 COG:L88187 KEGG:ns NR:ns ## COG: L88187 COG0015 # Protein_GI_number: 15673623 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Lactococcus lactis # 1 428 2 429 431 580 67.0 1e-165 MLERYTRPEMGKIWTDENKYAAWLEVEIAATKAWAELGEVPEADAEKIAKNASFTAERVA ELEQVTHHDVVAFTRTVSESLGPEKKWVHFGLTSTDVVDTAQGYLLKQADEIIRKDLHEL KATIAEKAKKYKYTVEMGRTHGVQAEPTTFGLKIARWYAEINRDIERFEHAAKGVESGKI SGAVGTFANVPPAVETSVMKQLGLTQQPITSQVLPRDLHAEYIATLALVATSIENWATEI RGLQRSEIHEVEEHFRAGQKGSSAMPHKRNPIGSENLCGMARVMRGHVVTAYEDVALWHE RDISHSSAERVILPDTTIGVDYMLHRFNRILTNLDVFPETMLKNMDRTYGLIYSQRVLLK LIDEAGLSREKAYDMVQKLTAKSWNEQKQFKPLVENSEIMNYLSKEDIDDAFDYHYHLRH VDDIFKKLGLDD Prediction of potential genes in microbial genomes Time: Wed May 25 06:39:44 2011 Seq name: gi|227861920|gb|ACKR01000159.1| Lactobacillus crispatus JV-V01 contig00174, whole genome shotgun sequence Length of sequence - 10059 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 9, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 86 - 427 265 ## COG4226 Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters + Term 434 - 469 3.5 + Prom 450 - 509 5.7 2 2 Op 1 . + CDS 541 - 867 329 ## COG5294 Uncharacterized protein conserved in bacteria + Term 875 - 909 4.0 + Prom 875 - 934 5.0 3 2 Op 2 . + CDS 957 - 1316 322 ## LCRIS_01929 hypothetical protein + Prom 1337 - 1396 4.4 4 3 Tu 1 . + CDS 1420 - 1914 546 ## LCRIS_01928 putative protein without homology 5 4 Tu 1 . - CDS 1940 - 3337 967 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 3446 - 3505 16.2 - Term 3476 - 3509 2.4 6 5 Tu 1 . - CDS 3517 - 4320 526 ## COG1434 Uncharacterized conserved protein + Prom 4578 - 4637 7.9 7 6 Tu 1 . + CDS 4659 - 5291 404 ## LCRIS_01925 hypothetical protein + Term 5374 - 5411 -0.9 + Prom 5350 - 5409 3.6 8 7 Op 1 . + CDS 5438 - 5950 479 ## LCRIS_01924 putative protein without homology 9 7 Op 2 9/0.000 + CDS 6037 - 6336 108 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Prom 6349 - 6408 4.0 10 7 Op 3 9/0.000 + CDS 6445 - 6924 305 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 11 7 Op 4 9/0.000 + CDS 7007 - 7927 828 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Term 7931 - 7967 3.3 12 7 Op 5 . + CDS 8005 - 8934 669 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Term 8904 - 8952 6.7 13 8 Tu 1 . - CDS 8954 - 9235 259 ## LCRIS_01920 putative protein without homology - Prom 9272 - 9331 5.3 - Term 9269 - 9323 -0.5 14 9 Tu 1 . - CDS 9495 - 10022 361 ## FI9785_169 putative transposase Predicted protein(s) >gi|227861920|gb|ACKR01000159.1| GENE 1 86 - 427 265 113 aa, chain + ## HITS:1 COG:all5276 KEGG:ns NR:ns ## COG: all5276 COG4226 # Protein_GI_number: 17232768 # Func_class: S Function unknown # Function: Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters # Organism: Nostoc sp. PCC 7120 # 8 108 3 103 108 88 41.0 3e-18 MKKTNQYMKYKGYEGSIEYTLEDKILFGKVQGIKSLISYEGNTIDELEKDFQGAIDDYLM SCKEDGVIPEKPFKGNFNVRIDPSLHEKLANYAATKHQSLNASVEEAIKRFLA >gi|227861920|gb|ACKR01000159.1| GENE 2 541 - 867 329 108 aa, chain + ## HITS:1 COG:SA0887 KEGG:ns NR:ns ## COG: SA0887 COG5294 # Protein_GI_number: 15926621 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 14 101 9 97 106 70 42.0 7e-13 MNKSTIKTAFVTALVLVVGVICIFSFHNSFTDRLNPFISQETSYAQVDKGTQRYYNVKAY NPKTKKNLLLKKVGGYDPSGQYISIQHKGQYVKSIKYITRKQFMQAKE >gi|227861920|gb|ACKR01000159.1| GENE 3 957 - 1316 322 119 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01929 NR:ns ## KEGG: LCRIS_01929 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 119 1 119 119 192 98.0 4e-48 MKKTLTFVFRLLVLLCGIALAGFIVWQLFTNAPMLDVNVQTKGPVIIVIYSLVALITLGA AISFFTDKNMGSTIFLGGLLTVIAIILWIQNQDLADIYRWYFIYGLLVSLLSPFFRKEN >gi|227861920|gb|ACKR01000159.1| GENE 4 1420 - 1914 546 164 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01928 NR:ns ## KEGG: LCRIS_01928 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 164 1 164 164 311 96.0 6e-84 MLENEMSPAMVDHLAAGIMKKYNEQLLPAVQRMLPELDIQEAKSLDDPNRNVLDEKAIVH VIARDKKRNKYGLIIQVGSQEPGENILEVANAYQEEIIYGGLGGSPEKEFKATYVIFLCR IDPFGKGKPRYEYYGGKYNKETHQTSAAPNVIFINIDGDSKGYA >gi|227861920|gb|ACKR01000159.1| GENE 5 1940 - 3337 967 465 aa, chain - ## HITS:1 COG:CAC3007 KEGG:ns NR:ns ## COG: CAC3007 COG0488 # Protein_GI_number: 15896259 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 11 461 4 460 528 145 26.0 1e-34 MSETKFNKTLLSVSHVDFSYPKRNLFTDLNFSIANGERVALVGPNGIGKSTLIDLIRKQI QPDDGQIICHGEINYVPQVNDQTVINDSKSAGEKRLALIENTIWLPGSLLLLDEPTVYLD DTNIQNLLYLLKNYDGAILVASHDLDFINQLCERTIILQPNNAVYYPGNYAQYLEQKQLD KQAVHNFNEKRDILKQQITEKVSTLKQKSTDYNHFAKTQDNTGRYPSRSHDHVQKGLNSR LKRAERELAELPEKQHLYQHQLKLPEFKKWPTKIHNYSIKIDQLLSPQNKTLLSNTQLNL QTADIIGLIGPNGCGKTTLLKYLEHYINQQQSLPPASYIGLNTTKQKKPATVADFFHETI LSKTEVKRLLVKMDMFVDLTTRLTDLSGGEFAKLALIKQLYLEQESILLLDEPTNYLDPE SVTALAQMLKQSHLTCIIASHNCKFLTQFCQQIYKIKQQRLIELH >gi|227861920|gb|ACKR01000159.1| GENE 6 3517 - 4320 526 267 aa, chain - ## HITS:1 COG:lin1003 KEGG:ns NR:ns ## COG: lin1003 COG1434 # Protein_GI_number: 16800072 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 7 260 76 334 344 121 33.0 1e-27 MAGTIIFALTLIIMFFYDGIKIIIKEGNRWTNYLSLGMGISIIFFLFLYPLVGRISHDSW LKYPYIFLWLVIIYLVTIMMMYTLTSWINLINWHMPHLDYIVVLGAGIMGTKVTPLLAAR ISRGIEIYHKNPGSKLIMSGGQGPGEDIPEAAAMAEYAEKLGINKNDIIIENKSKTTQQN LQFSHALMKPNSRFCIVTSSYHVYRALVLAKRQGLKCTGYGAKTKWYFTLNAFVREFIAY LVITKKMQLTIIGFLAAIMIAAVAFHF >gi|227861920|gb|ACKR01000159.1| GENE 7 4659 - 5291 404 210 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01925 NR:ns ## KEGG: LCRIS_01925 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 210 1 210 210 352 99.0 5e-96 MNGNISDHMNKRELKHWLSERKFSRCVLYFELAYVVVLLFTLMFDFKVFMHLIAFQGIAI LIYYSIGAFLDRRIVIKKHDTFWETLTSIRFTKNVFLHLFEFLLFWANIGLSIAFARQLW TDILAKPLTGNFANLFENVWLIGDGLYVVLLFCVEVGILGGNRKLIRASSVLTVVLSLIL LFMQPSMQVASVIGLILSGANFWLSFRNKI >gi|227861920|gb|ACKR01000159.1| GENE 8 5438 - 5950 479 170 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01924 NR:ns ## KEGG: LCRIS_01924 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 170 45 214 214 285 98.0 3e-76 MRLIVIQFAVIAIMLIGSGLLNWYDKKMGRAVVAKKDHEFFLKTFIDETPTQKVKSVFRT ISFITILAAFVMVFFGCAQIFTDLSVKVKPSDLAIIENLLLLVDSFYVLTMFGIMCGLLF GKKRMERNSSLAAGFLSLVLIAFHPESWLLFTIGLLASVSGYTLYRLNQL >gi|227861920|gb|ACKR01000159.1| GENE 9 6037 - 6336 108 99 aa, chain + ## HITS:1 COG:SA2322 KEGG:ns NR:ns ## COG: SA2322 COG0697 # Protein_GI_number: 15928113 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Staphylococcus aureus N315 # 1 99 13 112 308 65 37.0 2e-11 MTLAVVGACFWGASGTAVEFLFSSTNVNTAWLVGLRLLFSGALLMIYACWKYLDQVKAML HDKKVIIMLIIFTFLGMGSSQLSYFVAVKYSNAPTATVI >gi|227861920|gb|ACKR01000159.1| GENE 10 6445 - 6924 305 159 aa, chain + ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 3 145 154 297 306 79 30.0 3e-15 MATGGRFDQLALSPLACFWGLIAAFSEAINTVLPGKLFKKYGPIPVIGAAMLVAGIAFLP IYFTQPMPKLAPVDVWVIVYIIIGGTLLAYTMYLSSVQYIEPSTVGMLGAFEPLIATILS VSLLHADFGPMDMFGGFLIIVATFMQLMPSRNPIKKNDE >gi|227861920|gb|ACKR01000159.1| GENE 11 7007 - 7927 828 306 aa, chain + ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 1 293 6 299 306 172 37.0 8e-43 MVTQKQRRLWAFLAGLACIMWGISGLFAKSLFNTSPEITPMWLSQIRMVTSGIILLIVAG VLKQKPIATMKNKHDAWTIIAYGIFGLLPVQLFYFIVVQQANASIATILQFVGPFFVMGY LAVTHKQVMRRIDVLAAICAFIGVVLLATHGRFNHFALTPSVLFWGLLSAVGVATNTLIP ISVLKRVSSLVVTGWGLLSAGICLMIVHPQMPHIPNTPHVWLDVVAVIVIGTLIPFQLMT NSLRFIKASTASLLDAFEPFSATVGSVICFGLVMTPMDWIGSILVVLAAMALNISPKKKK VKKTHQ >gi|227861920|gb|ACKR01000159.1| GENE 12 8005 - 8934 669 309 aa, chain + ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 1 293 6 299 306 171 36.0 1e-42 MVPAKTRRLWTFLAAMAAVMWGVSGLFAKGLFDISPKLTPMWLTQVRLIISGAVLLIASG FLKQKPIATLKNKHNVLVIIAYGIFGLLPVQLFYFMCIQVANASIATILQFIGPFFVLGY LAITHKQVMRRLDIIAALCAFLGVFLLSTHGQFNHLAITPVALFWGILSAFGEAAYTLIP VNIVKKVSSMVVTGWGMIFAGISLLIIDPQFHAVPNKPEVWLYTAAVIVIGTIIPFQIMA NALRYVIPSTVSLLDAFEPFSATIGSVIFFNLVMMPMDWVGSVLVVVAAMALNLTPKQKK NKINQKTKL >gi|227861920|gb|ACKR01000159.1| GENE 13 8954 - 9235 259 93 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01920 NR:ns ## KEGG: LCRIS_01920 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 93 1 93 93 113 96.0 2e-24 MDTKILTAIILIIVVIVLAYSPFYKRYQLFYLNKVGYWDILIQFLVIAGINLFIGLKYGL GALFLLIVPVPLDIIFLISMIYSYFKIRKLKRK >gi|227861920|gb|ACKR01000159.1| GENE 14 9495 - 10022 361 175 aa, chain - ## HITS:1 COG:no KEGG:FI9785_169 NR:ns ## KEGG: FI9785_169 # Name: not_defined # Def: putative transposase # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 175 111 285 285 330 90.0 1e-89 MIIDSFPIPVCQPVRNYHVKIFRGIADIGYKATKKIYYYGFKVHAIVSDDGYLLDYAVTK ASVHDAKETVELMINAHPINHYLLGDEGYLGKDLAAKLKRMGYVLWTPYRKNMRGAKKHN DHQLMAIRRTIESDFSLLSYYNAENNRARSLVGFQQRLEIAILAYNMAYCLERFN Prediction of potential genes in microbial genomes Time: Wed May 25 06:40:03 2011 Seq name: gi|227861913|gb|ACKR01000160.1| Lactobacillus crispatus JV-V01 contig00175, whole genome shotgun sequence Length of sequence - 5546 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 5, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 22 - 81 5.9 1 1 Tu 1 . + CDS 171 - 656 476 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) + Term 673 - 708 7.1 - Term 660 - 695 7.1 2 2 Tu 1 . - CDS 702 - 1388 775 ## COG3442 Predicted glutamine amidotransferase - Prom 1418 - 1477 4.9 3 3 Tu 1 . - CDS 1757 - 2167 483 ## COG3077 DNA-damage-inducible protein J - Prom 2268 - 2327 7.1 + Prom 2244 - 2303 11.9 4 4 Tu 1 . + CDS 2361 - 3965 672 ## COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain + Term 4105 - 4143 5.0 + Prom 3980 - 4039 5.4 5 5 Tu 1 . + CDS 4207 - 5433 545 ## COG0477 Permeases of the major facilitator superfamily Predicted protein(s) >gi|227861913|gb|ACKR01000160.1| GENE 1 171 - 656 476 161 aa, chain + ## HITS:1 COG:CAC0309_2 KEGG:ns NR:ns ## COG: CAC0309_2 COG0791 # Protein_GI_number: 15893601 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Clostridium acetobutylicum # 27 161 39 171 171 95 42.0 4e-20 MSFKRSLVKFATVLSVFFTGISFINVPLQTQTVQAASQSKTEKRNAVVQLAKEQVGKSYV YGATGPSAFDCSGLAQYVYKKAAKKTLPRTTYGQVTKGKKVSLSHLKKGDLLFWGSASAP YHVGIYVGDGQYVHAATPSQGVRKQAISAYFYPSAAKRVLN >gi|227861913|gb|ACKR01000160.1| GENE 2 702 - 1388 775 228 aa, chain - ## HITS:1 COG:SPy1034 KEGG:ns NR:ns ## COG: SPy1034 COG3442 # Protein_GI_number: 15675031 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 6 205 18 218 263 176 46.0 2e-44 MSDKLIKIAYLYEDLMNTYGDSGDVKILSFLLKREGYDTQVDNISLGDDFNAFDYDFVFF GGGQDFEQTVVAKDLPRHKETLDKYINDDKPMLCICGGYQLMGSYYKTNSGVTIPGLDIL PLHTVFKSDKRMIGDTRYMTEWGEVKAFENHSGQTYFDNKDKLHPLGDMIEGYGNNPQDH VEGLRYRNFIGSYSHGPLLKNTNVANAIMKMIIAWHQERVSEAEKVTE >gi|227861913|gb|ACKR01000160.1| GENE 3 1757 - 2167 483 136 aa, chain - ## HITS:1 COG:SPy0550 KEGG:ns NR:ns ## COG: SPy0550 COG3077 # Protein_GI_number: 15674648 # Func_class: L Replication, recombination and repair # Function: DNA-damage-inducible protein J # Organism: Streptococcus pyogenes M1 GAS # 1 52 10 61 104 61 53.0 5e-10 MTEKAAINIRVNKETKQNAEKVLNKLGIPMSVAIDMYLRQIALTDGIPFDLSSKKRKKKN DHETAMMVAEATAQYEIVKSNWEDKLAEFIPDWMNMNKMTKEELEARLAKHAQDARDGKS VEISKTFSDLNKELGI >gi|227861913|gb|ACKR01000160.1| GENE 4 2361 - 3965 672 534 aa, chain + ## HITS:1 COG:BH0451 KEGG:ns NR:ns ## COG: BH0451 COG2274 # Protein_GI_number: 15613014 # Func_class: V Defense mechanisms # Function: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain # Organism: Bacillus halodurans # 130 494 279 648 724 74 23.0 5e-13 MHTIFSKIDKKYKIEYWLLLGMNIISTGILTFNVYLEGILLNSLVYKADRAAFVRSIVLI TTLSLIRLLLSYFMNKIQILRFREINMEVNDVIMKELYVKDTLAVTKMNSVQTADRITED TTEVLTFLFQTINQIISIALSSILIFTYLFMAGSGFLLLIAILLPAYSLIYLFLRPKIFE VSLKLKEAYNKYFSGFTEWLSRYIEVKGNRREKIETERWSNTKRTLLGVAKRDFLLNLNM SNSEIVLQLIFQLVLFINGGLSVISGKMTIGSFSIIFQYFNQLLGQVDEIFSILFKFESF KVAWMRINNILTMKNEQDGRKIISKINLIQVHDFNIYLDEKTPLFTQNFSANFVTPGFYI VRGRNGIGKSTLLRTIIGLYTPKKEGKITINGIDADLINKRKLRESNISCLFQDIPLPNC SVRDYLGSYSDKSQVYKSEYFAKVFDSPQFRIEKILDREMSELSTGEIQLVKLYSAVLKT GAQCFLLDEPLANIYPELQSDLLKLLQEIAQVNLVIIISHDLKLNENTKNIRIE >gi|227861913|gb|ACKR01000160.1| GENE 5 4207 - 5433 545 408 aa, chain + ## HITS:1 COG:SP0168 KEGG:ns NR:ns ## COG: SP0168 COG0477 # Protein_GI_number: 15900106 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 23 378 15 358 392 107 27.0 3e-23 MFNLIEKENVNVRRLLAGRVLTNIADSLFYMAILWFFKVRFHSPLILSLIFVADSSIEML SFVFGPLIDRVYIKKLLKLVTLVQIVDSVIAALLFQIKLWQDLTIWLLLGIYVISTIGST LIYPAEEKILPVIISKAKLTKVNGVFQMTYKTLDLFLNAAATLLITWVSLDSTIIISAVF FASALAFYTRLILSRKLLLSNKSNEYFTENYWQDLLKGWQTLKQEGKIARLIMPFAVTNL FYGISSVGLPYFATEHLTKSAISYGGLELASSIGGLVGSVLVQRLTFDKSKIKRLVVICL TLSGLAIVLEPAVPKGMPFLLLILFFTSELWIVMMNINFEVLVQESFSPHILGRVETINE SILSSMIPIGSFLGGLIVAHFGADWAIALEGIAQILTAGYYFVIGKKK Prediction of potential genes in microbial genomes Time: Wed May 25 06:40:10 2011 Seq name: gi|227861887|gb|ACKR01000161.1| Lactobacillus crispatus JV-V01 contig00176, whole genome shotgun sequence Length of sequence - 24102 bp Number of predicted genes - 25, with homology - 23 Number of transcription units - 10, operones - 6 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 57 - 116 6.1 1 1 Tu 1 . + CDS 177 - 1220 537 ## COG4823 Abortive infection bacteriophage resistance protein + Term 1295 - 1344 4.1 + Prom 1346 - 1405 4.1 2 2 Tu 1 . + CDS 1437 - 1757 117 ## gi|227878494|ref|ZP_03996431.1| hypothetical protein HMPREF0506_1432 + Term 1784 - 1814 2.1 + Prom 1785 - 1844 7.1 3 3 Op 1 . + CDS 1865 - 2698 466 ## LCRIS_01911 transcriptional regulator, XRE family + Prom 2704 - 2763 3.4 4 3 Op 2 . + CDS 2796 - 3029 77 ## LCRIS_01910 putative protein without homology 5 3 Op 3 . + CDS 3090 - 3284 56 ## + Term 3372 - 3429 11.2 - Term 3370 - 3410 10.6 6 4 Tu 1 . - CDS 3417 - 4232 1051 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase - Prom 4258 - 4317 7.7 7 5 Op 1 . + CDS 4357 - 5856 1406 ## COG0554 Glycerol kinase 8 5 Op 2 . + CDS 5912 - 6685 785 ## COG2365 Protein tyrosine/serine phosphatase 9 5 Op 3 1/0.000 + CDS 6693 - 7643 945 ## COG1609 Transcriptional regulators + Term 7658 - 7697 3.0 + Prom 7682 - 7741 7.8 10 6 Op 1 . + CDS 7772 - 8947 1242 ## COG0282 Acetate kinase 11 6 Op 2 . + CDS 8948 - 9376 381 ## COG2461 Uncharacterized conserved protein + Term 9382 - 9421 6.1 + Prom 9389 - 9448 5.0 12 7 Op 1 7/0.000 + CDS 9489 - 11150 1359 ## COG0366 Glycosidases 13 7 Op 2 3/0.000 + CDS 11154 - 12875 1541 ## COG0366 Glycosidases + Term 12901 - 12938 1.0 + Prom 12919 - 12978 6.1 14 7 Op 3 11/0.000 + CDS 13047 - 15311 2406 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) 15 7 Op 4 3/0.000 + CDS 15304 - 15966 885 ## COG0637 Predicted phosphatase/phosphohexomutase 16 7 Op 5 1/0.000 + CDS 15988 - 17094 1277 ## COG3839 ABC-type sugar transport systems, ATPase components + Prom 17112 - 17171 3.9 17 7 Op 6 19/0.000 + CDS 17210 - 18436 1813 ## COG2182 Maltose-binding periplasmic proteins/domains + Term 18458 - 18498 1.0 18 7 Op 7 20/0.000 + CDS 18511 - 19869 1361 ## COG1175 ABC-type sugar transport systems, permease components 19 7 Op 8 . + CDS 19872 - 20729 940 ## COG3833 ABC-type maltose transport systems, permease component + Term 20741 - 20798 10.2 - Term 20784 - 20817 0.0 20 8 Tu 1 . - CDS 20877 - 21716 441 ## LCRIS_00472 ranscriptional activator Rgg/GadR/MutR-family - Prom 21759 - 21818 9.5 + Prom 21760 - 21819 4.1 21 9 Op 1 . + CDS 21908 - 22285 298 ## gi|227878513|ref|ZP_03996450.1| hypothetical protein HMPREF0506_1451 22 9 Op 2 . + CDS 22288 - 22674 383 ## gi|227878514|ref|ZP_03996451.1| hypothetical protein HMPREF0506_1452 23 9 Op 3 . + CDS 22700 - 23149 503 ## FI9785_469 hypothetical protein + Term 23160 - 23206 9.8 - Term 23153 - 23189 0.4 24 10 Op 1 . - CDS 23331 - 23687 263 ## LBUL_1063 hypothetical protein 25 10 Op 2 . - CDS 23692 - 24021 111 ## - Prom 24042 - 24101 5.3 Predicted protein(s) >gi|227861887|gb|ACKR01000161.1| GENE 1 177 - 1220 537 347 aa, chain + ## HITS:1 COG:FN1184 KEGG:ns NR:ns ## COG: FN1184 COG4823 # Protein_GI_number: 19704519 # Func_class: V Defense mechanisms # Function: Abortive infection bacteriophage resistance protein # Organism: Fusobacterium nucleatum # 2 329 5 299 299 117 27.0 4e-26 MEHHLSYVDQVLLFKKKGITGIDQNSIKFEKQVNTLKIIGYYKLKQYSYAFWDHDNNQYM GISFDELVKRYYRDQRLKQEIFQAIGDIETALNNEISYILGKTDPYLYLDFEKWCQNSGR NKYLGTVKRRGRIMGVKIDKYKIKNEELAFLSQLQHQVKKSNYIDVQKFERTDRTRIFPT VWLMVNTLSFGQSIYLAKLMLPDNRKEISQKLFHLDIKSLIQSLELLNLIRNICCHNGDL VDISLKTMPKVATKYRKYLNMDNGNYPHRLAIVIISLLDLMYSLNKKYDFKYLKRTLNSL CKDTGRTQNYLAKRMGFKDKNSINALIESYKDKRAITFYPDGSYIYR >gi|227861887|gb|ACKR01000161.1| GENE 2 1437 - 1757 117 106 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878494|ref|ZP_03996431.1| ## NR: gi|227878494|ref|ZP_03996431.1| hypothetical protein HMPREF0506_1432 [Lactobacillus crispatus JV-V01] # 1 106 1 106 106 192 100.0 4e-48 MINFVAVFLHKKDGHSTALLIFELPASSPRTSRAYFLVLTVLYHDKIKMHVTKGSAFTLR AEGGVFSVKWCIFLVLVVIPIDRGSIKRFKKALKKRLKHMLDQLLR >gi|227861887|gb|ACKR01000161.1| GENE 3 1865 - 2698 466 277 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01911 NR:ns ## KEGG: LCRIS_01911 # Name: not_defined # Def: transcriptional regulator, XRE family # Organism: L.crispatus # Pathway: not_defined # 1 277 1 277 277 467 89.0 1e-130 MKIGEALRKKRLKLGLTQEQMCEGILSRPFYAKVESDKNRINAESLFQILLEHQIDLVEF CDLIQDDYTLEERKVEKQFETKMNQAVSAKDTEALDKYCQQIMNSSNNEILKLRALITLT YFKGKTDKIDVEIRKKIKAEFDEGNNWLERPDLLRLLVNTMPMWPQDELDFLIGRLLDFA NKSELSELTTERYLRLLENYLVVCYDRKVHKQLTHFDHIDDVMEYIINATGSFHLMIYRI EVFYMKALFLDQKDKTKEIRQDLGVLGYKNFIASWSE >gi|227861887|gb|ACKR01000161.1| GENE 4 2796 - 3029 77 77 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01910 NR:ns ## KEGG: LCRIS_01910 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 77 1 77 77 68 93.0 7e-11 MQVDVASIVTAVVILIAVVIIIIKKESKISGMTIIAVGVVFLIDSCVLRYKPVMQLVVLS ILFIMLGIFWIIKSYKK >gi|227861887|gb|ACKR01000161.1| GENE 5 3090 - 3284 56 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRESLLSPKLYTALKYILAVALIIILILPLPAINQKKINYWLVGSYCLVLGDWLATWMQH HHIH >gi|227861887|gb|ACKR01000161.1| GENE 6 3417 - 4232 1051 271 aa, chain - ## HITS:1 COG:PM1261 KEGG:ns NR:ns ## COG: PM1261 COG0351 # Protein_GI_number: 15603126 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Pasteurella multocida # 4 271 3 270 273 223 44.0 3e-58 MEKNQKIAVTIAGNDSDGSAGMPADLHSFYARGVYGMGLMTAAVAGNTKGIFAQQIMPLD FIQKQFDVLNDDFKINATKTGMLANKEIIDCVADNLEKYDMGKIVLDPVIITKHGATLLD DDAYQTFLDRLLPLADVITPNFYEQQKLTGLKLNNKEEIHAGAKKLQEMGAKNVLMKGRH DSDNQTEVTDILLTEDGAFHEFTKPFFKTDRVNGTGDTLSAVIAAELAKGKSVIDAIKIG KDFTYAAISHPIDVGSKWGPINHLAAQEENR >gi|227861887|gb|ACKR01000161.1| GENE 7 4357 - 5856 1406 499 aa, chain + ## HITS:1 COG:SPy1684 KEGG:ns NR:ns ## COG: SPy1684 COG0554 # Protein_GI_number: 15675545 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 3 499 4 500 508 734 71.0 0 MTEKYILAIDEGTTSTRAIIFDHDGREVASAQKEFHQYFPEPGWVEHDANKIWMAVQTTI ANAFINSGIWPNQIAAIGITNQRETTVVWDKDTGEPIYHAIVWQSRQTTELAEKLKKEGY SDEIRQKTGLIIDPYFSATKIRWILDHVPGAQEKAEQGKLLFGTIDSWLVWKLTDGAKHV TDYTNASRTMLFNIHTLKWDDDILHLLNIPKKMLPEVRSNSEIYGETASYMFFGGQVPIA GMAGDQQAALFGQLALKPGMVKNTYGTGAFIVMNTGDKPTDSNNNLLTTIGYGINGKITY ALEGSIFVAGSAIQWLRDSMKLIKHAPDSEQAALESTSENEVYVVPAFTGLGAPYWDAET RGSIFGVTRGTTDKDIIKATLQSLAYQTRDVVDTMQQDSGIEIPALRVDGGASNNNYLMQ FQADILGIEIERAKTLETTSMGAAFLAGLAVGYWKNIDELKHTFTIGQAFEPKMSAVERE KLYSGWQRAIRAARLFAHD >gi|227861887|gb|ACKR01000161.1| GENE 8 5912 - 6685 785 257 aa, chain + ## HITS:1 COG:lin2049 KEGG:ns NR:ns ## COG: lin2049 COG2365 # Protein_GI_number: 16801115 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 4 257 75 326 326 101 30.0 2e-21 MKHDRILALDRPLNFRDIGGYQNDKGQHVKWNKIYRSDSLSSLSKEDQEKLVERRITVDV DLRSKYEQNSAPDKLWSNVRFVDAHIYSENRKQNKGDNKLYRFVHHIPDMGDNWLGQIYQ QVLLNSHSQHEFAKIFAELIELPEEDALVYHCSAGKDRTGMTSALILTALGVDDDTISRD YLLTNELYDFALAKQFPDDNEIASLVSKMNITKGEGPAIRGITETIRQGWGSFDGFFKKE LGFSQKDLNRFRKMYLE >gi|227861887|gb|ACKR01000161.1| GENE 9 6693 - 7643 945 316 aa, chain + ## HITS:1 COG:BS_yvdE KEGG:ns NR:ns ## COG: BS_yvdE COG1609 # Protein_GI_number: 16080516 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 315 1 315 316 324 51.0 1e-88 MTTLSDVAKEANVSKMTVSRVINHPEQVTPELRAMVEKAMEKLNYHPNSIAQALVNNRTN VVKFVTLEDIDTTEPYYMNLLFGFARGLNTKQYAMQLVTDPNQIEKEHADGYLITGARNK DYELFDKLDKPFVLFGENHRGYDFVDSDNQLAEKMATQYALDRLYKHIVFIGIDLKEPFE YSREAGYINTLQQHQLIPQIFRVSNHSHAAQDVIHEHFKEFKKDTCFVCASDRIAVGVVR QLQDEGARIPKDFGVIGFDGVFLDQVSNPKLTTIKQPIFEMGEMLAKMLLQKIAQSGSPQ GEVMLKPKLIRRQSTR >gi|227861887|gb|ACKR01000161.1| GENE 10 7772 - 8947 1242 391 aa, chain + ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 1 391 1 395 395 421 51.0 1e-117 MKKVLAINSGSSSFKYKLFLFPDEKVIASGMADRVGMDNAVFKIKLNGKEYIKNTSIPDQ EAAVSLLIENLKKFHVLKSLDELAGVGHRVVNGGKVFRESALIDEKKLQQIFDLGELAPL HNVPEAMGIKAFMKIIPDVPQVAVFDTSYHTSLDQVNYLYPIPYKYYEKYGIRKYGAHGI SVSYVAPRTARLMGRNLYTLKLIVCHLGSGASVTAVKNGKSLDTSMGFSPLTGVAMGTRS GDFDPSALEYIMQKTSMTVEEAVDMLNHKSGMLGVSGVSSDMRDLLASKKKHARLARKIF VNRVVRYVGAYAAEMDGIDGIVFTAGIGEHDPGVRAGVMSALHYLGLEPDYKANRTDGEK FISKPDSKVKALIVPTNEELMIAREVIRLAK >gi|227861887|gb|ACKR01000161.1| GENE 11 8948 - 9376 381 142 aa, chain + ## HITS:1 COG:CAC1531 KEGG:ns NR:ns ## COG: CAC1531 COG2461 # Protein_GI_number: 15894809 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 5 126 275 396 405 69 31.0 1e-12 MTDKIELIGGSLSVEQLNAIFETIPQEMDVLDENDVVVWSSMNKHRLFKRTEKDIGKTVF EVHPGHSQGHVKAVLKQMHEGKRGKLSIMIHKDGIPVNIAFYSLHNDQGKYLGCIEVTQP VADLQEKGSKWRNVWNMIFKKK >gi|227861887|gb|ACKR01000161.1| GENE 12 9489 - 11150 1359 553 aa, chain + ## HITS:1 COG:BH2903 KEGG:ns NR:ns ## COG: BH2903 COG0366 # Protein_GI_number: 15615466 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 3 520 4 521 561 360 37.0 4e-99 MAHWYDHAIIYQIYPKSFQDSNGDGVGDLNGIRKRIPYLKNLGVNAVWLNPVFVSPQVDN GYDVSNYFAIDPHMGTMEDMENLIKDLHKAGIHLIMDFVLNHTSDQHPWFQDAIKNPDSL YRDYYIFAGHDGKRPNNWGSFFGGSVWEPDPAGTGQSYFHLFDKRMPDLNWKNPEVRHAM LEVAEYWLKKGIDGLRLDAFIHIGKADLRQNYPTGDGDVNKPIVAEPFFANLPQVQEWMR PFCEQIKQDYPDTLLLGEAASASVNLAVDYTTKRNHLMDSVITFRYFTDDDSNCDQRFSK QYQPKKLDLTAFKQNQVVWQQTLAGVSQPTLYWNNHDMARLATRVARTQTQAKSLAMLMY LQRGIPVIYYGEELGLKNLHFTSADQFEDQTVAPWLKDAEKVLSKDAALAMVSETHKLPA RGPMPWDATENHGFSEVKPWITGIKQDDACVANEINDTTSMFNFYKELLELKKEALFQIG TYYMISTDKNSYVYQRDLHDESAIVAVSLSDQKTTVEIPAGYTVATLKAGEYQLTNEKLT LMPYAGVVLKKEN >gi|227861887|gb|ACKR01000161.1| GENE 13 11154 - 12875 1541 573 aa, chain + ## HITS:1 COG:L128694 KEGG:ns NR:ns ## COG: L128694 COG0366 # Protein_GI_number: 15673664 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 1 570 1 582 584 550 48.0 1e-156 MQLAALRHRTESEDSFVVDPSHVRVRFHSAKNDVKKVIVHYCDNYLPLEQAKTCEMEKIG VGQCEDHWGITLEAPYHRLKYTFEVIGSDGTSVVVGDRAISSDVDKAIMEDGSYFKVPYC HEIDMVKTPEWVKHTVWYQIFPERFANGDKSNDPQGVKAWNPEDHPGREDFYGGDLQGVL DHLDYLKKLGVNGLYFCPIFKASSNHKYDTIDYLQVDPAFGDKDLFAKVVNEAHARGMKV MLDAVFNHLGDQSMQWQDVVKNGPSSRFASWFHINEYPVEPYRDPLKGEGSPKFDTFAFE KHMPKLNTANPEVQDFLLEIATYWVKYFDIDAWRLDVANEVDHHFWKKFHKAVTDIKSDF YIVGEVWHSARPWLNGDEFTGVMNYPYTLQIEDHFFKHKLSAQELTSRLTDQLMKYRDAT NAAMMNMLDSHDTARILTVANGDQDLALQALAFEFMQKGSPCIYYGTEMGMTGGNDPDCR KPMDWAKEDGPVWQRVHQLIDFRLQHDETFGKGRIKLHVTENGLIEVDREGNESIKAYFN TTDHPVEINCENTFSQDYENNQLAPKGFVVSVH >gi|227861887|gb|ACKR01000161.1| GENE 14 13047 - 15311 2406 754 aa, chain + ## HITS:1 COG:NMB0390 KEGG:ns NR:ns ## COG: NMB0390 COG1554 # Protein_GI_number: 15676304 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Neisseria meningitidis MC58 # 3 751 4 747 752 841 58.0 0 MKRIFEIDPWKVVTHKFEPKDKRLQESMTAIGNDYMGMRGNFEEGYSGDSLQGTYLAGVW FPDKTRVGWWKNGYPKYFGKVPNSPSFINMGITINGEKLDLAKVKFSDFYLALDMHQGLL TRSFTYEGKDTKVKFEFERFLHITLKEAALIKVKATVLSGKAKIDFDAALDGTVVNEDSN YDAKFWMPLGENAEARTIKVETKANPYKVPQFTVLLKQSLRHNGEVVKGDVSTEAAQLHE KLSVELNEGESYDLEKDVIVVTSRDVKPDDQDAKAAELMTKLQAKSFEENLADHEAVWQK RWDKSDVVIAGDDAAQQGIRFNICQLFMTYYGEDERLNVGPKGFTGEKYGGATYWDTEAY IVPMYLCVTDPSVTRALLQYRHDQLPGAYHNAKEQGLPGALFPMVTFNGIECHNEWEITF EEIHRNADIPHAIAMYTDYTGDDSYVKNEGMDVLVGTARFWAARVHWSKWRNKYVMHGVT GPNEYENNVNNNWFTNTMARWLLKYTLERLPLATKEAQERVRVTDEEKAKWQDIVDNMYL PEDKERGIFLQQDDFLDKDIRPVSEIKDQRPINQHWSWDKILRSPFIKQADVLQGIYFLN DEYTMEQKEKNFDFYEPLTVHESSLSPCIHSILAAELGKQKKAVELYQRTARLDLDNYNN DTVDGLHITSMSGSWLTIVQGFAGMRYDHNQLKFNPFVPEGWDHYSFKINYRGRLIEVYV DHEGTKLTLLKGEDIDVLVHDKKVTLKEGETTNA >gi|227861887|gb|ACKR01000161.1| GENE 15 15304 - 15966 885 220 aa, chain + ## HITS:1 COG:BS_yvdM KEGG:ns NR:ns ## COG: BS_yvdM COG0637 # Protein_GI_number: 16080508 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Bacillus subtilis # 2 210 1 209 226 186 44.0 2e-47 MLKGLLFDLDGVLTNSAKFHLTAWNNLAKELGITLTDAQLDSLRGISRMDSLNLILKYGG QEDKYTEAEKEKFAAEKNAKFVEQVETMTPKDILPGIPELLADAKKQNLKMVIASASKNA PKILTRLGIMDEFDGIVDPATLHHGKPDPEIYIKAQEIAGLKADEVISFEDAKAGVEAIK AAGQFAVGIGDKELLKEADYIVPTTAELKLSEIEKVFNEK >gi|227861887|gb|ACKR01000161.1| GENE 16 15988 - 17094 1277 368 aa, chain + ## HITS:1 COG:SPy1976 KEGG:ns NR:ns ## COG: SPy1976 COG3839 # Protein_GI_number: 15675768 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 1 366 1 376 377 496 64.0 1e-140 MVEVDLNHIYKKYAGNDRYSVNDFDLHIKDKEFIVFVGPSGCGKSTTLRMVAGLEDISKG TLEIDHKVMNDVAPKDRHIAMVFQNYALYPHMTIYDNMAFGLKLRHTPKDEIDQKVKKAA KMLGLEEYLDKKPGALSGGQRQRVALGRAIVRAAPIFLMDEPLSNLDAKLRVVMRTEIAK LHQDLGTTTIYVTHDQTEAMTLADRVVVMSVGRVEQIGSPLEVYNKPVNMFVAGFIGSPQ MNFFNVHYKDGRISDGKGLNIGIPEGKAKLLEEKGYNDKDLVFGIRPEDIHSEEAFMETW PDSVIESNVVVSELLGATIQIHQEVDGTEFTAIVNSRDYHKPGDKVKMGFDVNKAHFFDK DSTKAIVN >gi|227861887|gb|ACKR01000161.1| GENE 17 17210 - 18436 1813 408 aa, chain + ## HITS:1 COG:L128695 KEGG:ns NR:ns ## COG: L128695 COG2182 # Protein_GI_number: 15673665 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Lactococcus lactis # 1 407 1 407 410 333 50.0 5e-91 MKIWKKMALGSTAVLAALSLAACSNGSSNSSSSSSNSNKKANLTLWVDTEQVPYYKQIAK DFTKKNKNIKVRVVQSPNGSANAKTDVGKDPSKAADVFEVPNDQLGQMAEAGYINPLSPS ATKDIQDNYVDVASKGVTWKGKVYAFPYAQQAQTIYYNKSKLSANDVKDWKTLTSKGVVA TDFTNAYVMWPVMFSAGTTLYGKNGEDLKGSTFNSQNGVNALKWYAAQKKNKGVMQTSNA LNQLKKGNAQAILDGPWNAANIKKILGKNFAVAKYPKIEVGGKSVQMEAFLGIEGFAVNA NTKNAKAASDLAAYITNKKSQLIAHKNAGQIPVLKSAVNSSAVKSDPVAEAVIEMAKPGN SVLQPKLPQMAAFWNGAAPLISGTYDGKIKPAQYKPQLAKLAKNIEKK >gi|227861887|gb|ACKR01000161.1| GENE 18 18511 - 19869 1361 452 aa, chain + ## HITS:1 COG:L128696 KEGG:ns NR:ns ## COG: L128696 COG1175 # Protein_GI_number: 15673666 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Lactococcus lactis # 1 452 1 452 452 534 63.0 1e-151 MFLKKKHVAPKATYREVWSKGDIATKLSFFLMGSNALANKQWVKGISLLLSEIIFIVWFI LSGIPTLNSLATLGTIKTKKVVYDAAQGVYVTKQPSNSVLILLFGVLALILCVAIIYLYI VNLRSTRHNYILKRDGDHIPTNVEELKSLLDTRLHATLMVIPLLGILFFTILPTIFMISM AFTNYDRQHPIAFSWTGFQAFGNVLSGDLAGTFFPVLGWTLIWAVAATATTFFFGVLLAL LIESKGIKHKGFWRTIFVIIWAVPQFVSLLMMAQFLDYQGALNNILMNLHWISSPIHFID NQASPLVARITVILVNMWIGIPVSMLVSTAIIQNLPQDQIEAAKIDGANAAQIFRSITFP QILFVMAPSLIQQFIGNINNFNVIFLLTGGAPMNSKYNGAGSTDLLVTWLYNLTFGQEQR YNASAVLGILIFIISATVSLIAYRRTNAFKEG >gi|227861887|gb|ACKR01000161.1| GENE 19 19872 - 20729 940 285 aa, chain + ## HITS:1 COG:L128697 KEGG:ns NR:ns ## COG: L128697 COG3833 # Protein_GI_number: 15673667 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type maltose transport systems, permease component # Organism: Lactococcus lactis # 1 285 1 285 285 333 63.0 2e-91 MKSYSNQRRLSLIFRYILLIVLAILWILPIVWIVLASFSFNDTGFVSTFWPEKFTLQNYI GIFTNPQYPFGNWIINTLVISLLSMVISTFLTISVAYVLSRLRFAFRKPFLQIALVLGMF PGFMSMIALYYILKGLNMLNLFGLLLVYVGGAGLGFYVAKGFFDTIPRSIDEAAEIDGAT KWQVFLHIGLPLSKPMIVYTALTAFIAPWTDFIFSGIILSTSGNAKTYTVAYGLYNMVHT AKGNATAYFAQFVAGCVIIAIPITILFVFMQKFYVNGITAGADKG >gi|227861887|gb|ACKR01000161.1| GENE 20 20877 - 21716 441 279 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00472 NR:ns ## KEGG: LCRIS_00472 # Name: not_defined # Def: ranscriptional activator Rgg/GadR/MutR-family # Organism: L.crispatus # Pathway: not_defined # 1 278 1 278 284 217 46.0 3e-55 MYGKKFKEIRIKQNISLEQAAKDVVSISTLSRWENDKLDINFSQLNHLLANIHLTLREFA RYCEINPSDTFSIKAAKAYNSDDINQLHALAQQQLDKYYSSRDRYDLFLTAIANNYYFDL TQKNIFSQEDINRLNYLFSHVEYWSEFYITVFANTVFLIKPEVQYQICNKILSQLYLQDF SSWDIFIDSIGSILNSLTSLIISNPSLAQKLLEKINKLPIPIQCSYMKIRRNFLDKLLHY RLNKDNENEILNIISSLKTLGLPQIAHNFSTLFTRIKDL >gi|227861887|gb|ACKR01000161.1| GENE 21 21908 - 22285 298 125 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878513|ref|ZP_03996450.1| ## NR: gi|227878513|ref|ZP_03996450.1| hypothetical protein HMPREF0506_1451 [Lactobacillus crispatus JV-V01] # 1 125 29 153 153 219 100.0 4e-56 MKSISRKLVSLSLVGLVGTTLLTFSSKVDASTETQSTVSSELRADYYKPKRIWITLGSSC DYGPTHYFEYNGYRGYLSKVMREKVGKSATTLYRRYLYSYDVKNIPAPASARKKVLLKLE QNEEK >gi|227861887|gb|ACKR01000161.1| GENE 22 22288 - 22674 383 128 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878514|ref|ZP_03996451.1| ## NR: gi|227878514|ref|ZP_03996451.1| hypothetical protein HMPREF0506_1452 [Lactobacillus crispatus JV-V01] # 1 128 1 128 128 221 100.0 1e-56 MKKVLLTTATLLGVTAATVLATNNQRVQASETTVQETKGVKVYGPIKNAPLHKYVSNVYR YSSWGKGDAMNLLNTTPSKVYYNDGAYSGYLYRNSTWMDHNFKTNRNRWVSMYSGNVRLI SRGLVPNN >gi|227861887|gb|ACKR01000161.1| GENE 23 22700 - 23149 503 149 aa, chain + ## HITS:1 COG:no KEGG:FI9785_469 NR:ns ## KEGG: FI9785_469 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 148 1 148 152 138 52.0 5e-32 MKKKMTLSVIAVVTVLVAVIGGMFFYNNQTTVPKNWVNRTLTVDNTENRLSNWFDLYFTK NHAILVAKNSNNSEQKKTKLNKEILQAYSTKKNNPPQTGVKADLGRVDTTESKNGYTIRT KKVVFIFTKMSDGSYRSQDGTVWQFSPKE >gi|227861887|gb|ACKR01000161.1| GENE 24 23331 - 23687 263 118 aa, chain - ## HITS:1 COG:no KEGG:LBUL_1063 NR:ns ## KEGG: LBUL_1063 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 116 1 115 123 65 32.0 7e-10 MFSKKELKIINTTLIIIYLLSVGPTFIFGFTKSNDFTSTFFLIANIILVCLFIIIAIRIA KINFRLKTQYYLLGFITLISIIELAYPGLTLNERISNYFAIGNIILSLLTTKISKKLV >gi|227861887|gb|ACKR01000161.1| GENE 25 23692 - 24021 111 109 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKILRRSLCIISITLFSFALSILIPSVQASKTVLDDLIIFLYLIGIVILGILLLSNKFDY LSLSLSIILLLATIIAWIRFPMISIIYTFFIAYLIMCLLTIFIAKRIKK Prediction of potential genes in microbial genomes Time: Wed May 25 06:40:54 2011 Seq name: gi|227861882|gb|ACKR01000162.1| Lactobacillus crispatus JV-V01 contig00177, whole genome shotgun sequence Length of sequence - 5742 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 4, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 61 - 1308 1171 ## COG0477 Permeases of the major facilitator superfamily - Prom 1330 - 1389 6.8 2 2 Tu 1 . + CDS 1460 - 2443 661 ## LCRIS_01884 D-ala, D-ala ligase + Term 2452 - 2490 6.2 - Term 2435 - 2483 8.0 3 3 Tu 1 . - CDS 2515 - 2877 459 ## LCRIS_01883 aggregation promoting protein - Prom 3082 - 3141 6.0 + Prom 2850 - 2909 6.0 4 4 Tu 1 . + CDS 3092 - 5629 3294 ## COG0308 Aminopeptidase N Predicted protein(s) >gi|227861882|gb|ACKR01000162.1| GENE 1 61 - 1308 1171 415 aa, chain - ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 13 406 4 389 402 311 42.0 2e-84 MNKTKSAKLPAGWHMAFYTLWLGCFITGMGYSMTMPFISLFISDLGNYSKLQINLYSGLA FAMTFIAQAIVSPYWGSLADRKGRKLMCMRASGVMALTITLTGFAPNAIYIIVMRFIQGS FSGYINNATALMASETPHERSGWVMSQMMTAGTAGNLVGPLLGGALSSFFGNMFGGAWGY RIPFFITGVLMFIVFLGTTFLVHEDFTPISREKMKPMGEIMKSLPSVKLIVVMFITTMLV QSSTMSIDPIVSLYVKSMMPHGGDVAFVAGVVAATPGLGTLIAASRIGHKMDEVGPLRVL RIGLVVGAALFVPMALTNSPWVLAGLRFLLGIASAGMLPAAQTVLTLNTPSESFGRIFSY NQSFQAVGAVLGSLMGSTISGFSNYATVFWLTGFTLLINFVLVLIFAWGISYRNR >gi|227861882|gb|ACKR01000162.1| GENE 2 1460 - 2443 661 327 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01884 NR:ns ## KEGG: LCRIS_01884 # Name: not_defined # Def: D-ala, D-ala ligase # Organism: L.crispatus # Pathway: not_defined # 1 327 1 327 327 627 99.0 1e-178 MAHMSRREYRMKKEHGQAGADRSRTDYTKTRATTREEFRSRKISNPQPIINQNVANASRK NYHHVKLNFWNIFSDRPYISVAIIVLALFFAMIKFWWGLVILALIVIAGIFIIGHSHHPD RVLSLEFHLKASRKLSMLRALELGGSVTMFLATYMKQVVSVDFSSAGSTDTFQLVQGILS NNGGVYGQRGSYFLSLLNTLSGGSLWSSYRYATNSAQMMNSSSGRWIIMWILLLMIAPAF CVLAQFFKEPYSRNVALVTSIISTVSFVLTPVLMRKWVVGYAMENQVAREAANNAVHIGT MAYVGMACSILVLVIALYRFIKQDNFE >gi|227861882|gb|ACKR01000162.1| GENE 3 2515 - 2877 459 120 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01883 NR:ns ## KEGG: LCRIS_01883 # Name: not_defined # Def: aggregation promoting protein # Organism: L.crispatus # Pathway: not_defined # 1 120 1 120 120 196 99.0 2e-49 MNKHVKSTLVKILAALALAFACVAVANAFSTNTSTTQTVQAARKLSKAEKAAKRWIAMRE SGGSYTARNGVCYGKYQLNIGYLHGNLSPKNQERVADNYVYGRYGSWVNAKRFWLAHNWY >gi|227861882|gb|ACKR01000162.1| GENE 4 3092 - 5629 3294 845 aa, chain + ## HITS:1 COG:L102360 KEGG:ns NR:ns ## COG: L102360 COG0308 # Protein_GI_number: 15672287 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Lactococcus lactis # 1 842 1 841 846 800 48.0 0 MAVKRFYETFHPEHYDLRINVNRKQKEINGTSTVTGEVIENPVFINQKNMTIDSVKVDGK DVPFDVLEKDEAIKIETGKNGKAIIEVEYSAPLTDTMMGIYPSYYEVDGVKKQIIGTQFE TTFARQAFPCIDEPEAKATFTLALKWDEEDGEVALANMPEVEVDKDGYHHFEETVRMSSY LVAFAFGDLQSKTTHTKDGVLIGVYATKAHKPKELDFALDVAKNAIEFYEEFYQTKYPLP QSLQLALPDFSAGAMENWGLVTYREAYLLLDPDNTSLEMKKLVATVITHELAHQWFGDLV TMKWWDNLWLNESFANMMEYLSVDGLEPDWHIWEMFQTSEAPAALTRDATDGVQPIQMEI NDPADIDSAFDSAIVYAKGSRMLVMVRSLLGDDALRKGLKYYFDHHKFGNATGDDLWDAL STATDLDIGKIMHSWLKQPGYPVVSAYVDSSDGHLKLSQQQFFVGEGKDVGRQWQIPLNA NFKAPKIMSDKEIDLGYYKNLRSEAGHPLRINVGNNSHFIVKYDKTLLDDILAHVDELDP IAKLQLLQDLRLLAEGKQISYAAVVPLLTKFADSKSSVVINALYATAAKLRQFVEPESAQ EKDLKKLYDKLSAGQVARLGWKVKPGESDEDAQIRPYELSASLYAENKDSIKTAHEIFTA NEDNLEAMNADIRPYVLINEVKNFGNAELVDKLIKEYQRTADPSYKVDLRSAVTSTKDLA AIKAIVGDFENADVVKPQDLRGWYRGLLANHYGQQAAWDWIREDWDWLDKTVGGDMEFAT FITVTTGVFHTPERLKEFKEFFEPKVNVPLLSREIKMDIKVIEGKVNLIEDEKDAVNSAV AKAID Prediction of potential genes in microbial genomes Time: Wed May 25 06:41:03 2011 Seq name: gi|227861873|gb|ACKR01000163.1| Lactobacillus crispatus JV-V01 contig00178, whole genome shotgun sequence Length of sequence - 6533 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 3, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 74 - 114 -0.8 1 1 Tu 1 . - CDS 123 - 1019 541 ## COG0671 Membrane-associated phospholipid phosphatase + Prom 1567 - 1626 6.5 2 2 Tu 1 . + CDS 1796 - 2209 268 ## gi|262046132|ref|ZP_06019095.1| integrase + Prom 2238 - 2297 6.8 3 3 Op 1 39/0.000 + CDS 2384 - 3271 897 ## COG0226 ABC-type phosphate transport system, periplasmic component 4 3 Op 2 38/0.000 + CDS 3291 - 4199 599 ## COG0573 ABC-type phosphate transport system, permease component 5 3 Op 3 41/0.000 + CDS 4202 - 5077 850 ## COG0581 ABC-type phosphate transport system, permease component 6 3 Op 4 32/0.000 + CDS 5080 - 5835 208 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 7 3 Op 5 . + CDS 5854 - 6492 302 ## COG0704 Phosphate uptake regulator Predicted protein(s) >gi|227861873|gb|ACKR01000163.1| GENE 1 123 - 1019 541 298 aa, chain - ## HITS:1 COG:L125873 KEGG:ns NR:ns ## COG: L125873 COG0671 # Protein_GI_number: 15674037 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Lactococcus lactis # 7 297 6 303 307 128 32.0 1e-29 MSEENQKKLFGISAIICIILLTITYFGDLAISNTLINYHSWVGTFCQTFCEFPVYLIFAL CGQITMTYAWKGDCENLLGAGPLFVGGLALSLWQSKKYVNEFLGYLYSVQTNLKNGKAIA MANSDSVKGGYAGSMIIMVWLLFFVIFTLLVQWWLKNKTTKQLTRYMKIAILASLTVWFA LEVNLTLKDLWGRYRPYELTIGNHEFTNWLTINGVNGHKSFPSGHAMAATLCIVFSWFVS NNKHKIFFIGGIVYGVVIAISRVIMGAHFLSDVTFSFFLTVLIIFIMNGLGKKLIEDF >gi|227861873|gb|ACKR01000163.1| GENE 2 1796 - 2209 268 137 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|262046132|ref|ZP_06019095.1| ## NR: gi|262046132|ref|ZP_06019095.1| integrase [Lactobacillus crispatus MV-3A-US] # 1 137 5 141 141 266 100.0 2e-70 MVEIKPIRKISGELVTSIGSKQLDFQHSNLDDLFDKFVIFIDGSLNTVRTYRTSLKQWFI YMREKGITHPDPDTVRQYREFLKASGKKPTTIQNYIVAVKRFFEWTEEEHLYPNIARYVK GVKSESSIFYKCKKRIN >gi|227861873|gb|ACKR01000163.1| GENE 3 2384 - 3271 897 295 aa, chain + ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 4 273 2 276 302 215 46.0 7e-56 MSRKKTKVAIVALVLLAIVTGCVIDSCVADTKGVSGTVNIAGSSALLPLAQSAAKTFMDK NPDSVINTNGGGSGQGLKQVSDGTIDIGDSDLFADEKLDKKSASKLVDHQVAITAIAPII NKDAGVKGLTTEQLIKVFTGKVTNWKQVGGNDCQIVLVSRPSSSGTRATFEQYALKKHAS QSNQSLETDDSGTLVQMIQSVSGSIGYVSLSYLTGDPQVGIVSINGVKPTLKNVYNGKYT VWSYEHMYTKGQPKGAAKAFLQQMLSKEYSKKIEAMGYGVASKLLAAAKATHANK >gi|227861873|gb|ACKR01000163.1| GENE 4 3291 - 4199 599 302 aa, chain + ## HITS:1 COG:CAC1706 KEGG:ns NR:ns ## COG: CAC1706 COG0573 # Protein_GI_number: 15894983 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Clostridium acetobutylicum # 13 282 8 277 296 239 50.0 4e-63 MDKVVQKAIAKDKRWRADYIACGLLIVALTLFMGAFLLYQGSQTFLKAHYSVWEFLFTSD WAPLDKTGMFGGKVGAAIYIVGSLETCLLGLFICLPFAIGSAVFMTEISPKIGEKFFRPA TEIYVSIPSVVYGWFGLTKLVPIIRNAFHPKMGGFSVLAASIVLAIMIFPTITTVAADAI KSVPNSYREGAYGLGATRWQVIGKVVLPAASGGILTGVVLGLARAIGEALAVAMVIGKTR SFATSLLSPTSNLTSEIAADMGNTAQGGEYNLALWSMALLLFVISIVLIILIHKLGNGKK EK >gi|227861873|gb|ACKR01000163.1| GENE 5 4202 - 5077 850 291 aa, chain + ## HITS:1 COG:lin2640 KEGG:ns NR:ns ## COG: lin2640 COG0581 # Protein_GI_number: 16801702 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Listeria innocua # 5 286 4 290 294 221 42.0 2e-57 MSRAKIKDRLMTGIFYAIGWIMLAFLLYLMLTIIFDGLKGFQWDFLGAAGNGIFNQFFNT IYLVFLSLLVSVPIGIGAGVYLAEYAKEGKFLTIFEISIESLSSLPSIVIGLFGYLAFIM WTGMSWNILAGALTISILSIPLITTETNNAIRSLPVEYKEGSLSLGATKSETIRKVLISA AMPQILTGVIMAAGRGFGEAAALLYTSGQSTYINWQNFWKVISPSSPLNPFRSGETLSLH IWAMRTEGALNPSATQIANFTSAVLVVLTLLFTLVTRRISDRMRKRNNGGN >gi|227861873|gb|ACKR01000163.1| GENE 6 5080 - 5835 208 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 209 1 199 311 84 28 2e-16 MEDKITIKKLNLYYSDFHALHDINVHIPKNEVTAFIGPSGCGKSSLLRSLNRMNDLVEGC RIDGSIKLDGTDIYNGDLDVTVLRQRVGMVFQRPNPFPMSVYDNVAYGPRIHGITEKKEL DEIVETSLKQAAIWDDLKDRLKKSALGLSGGQQQRLCIARALAVKPKVLLMDEPTSALDP ISTSKIEELALELKKNYTIVIVTHNMQQAVRISDKTGFFLLGDLVEFGETDQLFSMPKDE RTEKYITGRFG >gi|227861873|gb|ACKR01000163.1| GENE 7 5854 - 6492 302 212 aa, chain + ## HITS:1 COG:aq_906 KEGG:ns NR:ns ## COG: aq_906 COG0704 # Protein_GI_number: 15606237 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Aquifex aeolicus # 7 209 5 209 221 104 35.0 1e-22 MRTRFDKELDHLHEAMEEIGQLCKESISESTDALFTGNYHKAEDTINLHHRIHKAERDIE ETCLRLLMEQQPVATDLRIISASLKAVYDLERIGEIGADIAELILKEHLSDANDMLNLKS MSQIATCMVNDAVTALANQNVELAKAVIDRDDQVDYDFGKAKAFLIDNFNKDSNPEYLIN LMMVAKYFEKIGDHAVNIAKWSLFVTTGKTGR Prediction of potential genes in microbial genomes Time: Wed May 25 06:41:13 2011 Seq name: gi|227861865|gb|ACKR01000164.1| Lactobacillus crispatus JV-V01 contig00179, whole genome shotgun sequence Length of sequence - 8269 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 3, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 40/0.000 + CDS 45 - 722 339 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 2 1 Op 2 . + CDS 986 - 2380 628 ## COG0642 Signal transduction histidine kinase + Term 2470 - 2524 1.1 + Prom 2676 - 2735 7.6 3 2 Op 1 4/0.000 + CDS 2780 - 3787 934 ## COG0208 Ribonucleotide reductase, beta subunit 4 2 Op 2 18/0.000 + CDS 3768 - 4193 443 ## COG1780 Protein involved in ribonucleotide reduction 5 2 Op 3 . + CDS 4186 - 6354 1817 ## COG0209 Ribonucleotide reductase, alpha subunit + Term 6407 - 6445 5.2 + Prom 6418 - 6477 6.7 6 3 Tu 1 . + CDS 6510 - 7916 1151 ## COG3666 Transposase and inactivated derivatives + Term 7931 - 7971 1.0 Predicted protein(s) >gi|227861865|gb|ACKR01000164.1| GENE 1 45 - 722 339 225 aa, chain + ## HITS:1 COG:CAC1700 KEGG:ns NR:ns ## COG: CAC1700 COG0745 # Protein_GI_number: 15894977 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 3 222 5 228 232 171 45.0 9e-43 MTEIWCVEDDESIREIEMYTLEAMNFKVRGFEDGHSFFKVLDNNRPDLVILDLMLPDEDG SEILHRLKYTSATEDLPVIIASAKTAEYDKVKNLDFGADDYLTKPFGMMEMVSRVKAVLR RTNRKKEDKIEKDGIKILLKRHEVFENGRQVDLTLKEYGLLKLLITHPGTVFSREEIMDQ IWETGFYVETRTVDVHVRTLRQKLGEAGKYIETLRGVGYRYHEAD >gi|227861865|gb|ACKR01000164.1| GENE 2 986 - 2380 628 464 aa, chain + ## HITS:1 COG:CAC1701 KEGG:ns NR:ns ## COG: CAC1701 COG0642 # Protein_GI_number: 15894978 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 1 453 94 564 566 220 32.0 6e-57 MGNHARREEVAEAMKKGTGTSERYSTTLSTVTMYYAERLNNGGVIRIAITRNSFWRMLLR LLSPLLLIMLLAVLVSWFLAKTLSQTIVKPLNEMDLDKPLESKAYDEIKPLLTRLDSQNK QIADQMEQLHHREKELKTVTDAMQEGLILIDLDDWILLSNPAVVSLLGLHDTDPLPDDVK EIIDKNSRLAHTEGIVERNGRNIQISASPIISRKILKGTSILVVDVTEEYHEEQVRREFT ANVSHELKTPLQSIMGSAELLENHLVKDEDRDGFYKKIHESSAQLLTLIDDIIRLSHLDE NQRFEEIKLNLKSPVTEALEALQGSAYRHGIKLETNLSDTMILANFRLVYEIAYNLIDNS IRYNKEKGKTKITVKEHRGQAILQVADTGIGIPQEAQNRIFERFYRVEKSYSRKTGGTGL GLSIVKHAVQQCHGTIRLESELGKGSTFTVIFPALPVGADGTNK >gi|227861865|gb|ACKR01000164.1| GENE 3 2780 - 3787 934 335 aa, chain + ## HITS:1 COG:SPy0425 KEGG:ns NR:ns ## COG: SPy0425 COG0208 # Protein_GI_number: 15674552 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 3 335 5 337 337 541 78.0 1e-154 MSYYDHSQSPVEFAYNDNGKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISS WNQLSDDWQQLITRTFTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARS YGTIFSTLCTSEQIEEAHEWVVNNDTLQARAKAVIPYYTGNDPLKSKVAAAIMPGFLLYG GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD FLDKLIDLEKKYLHELYDDFDLVDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPEVFA QLSAQADENHDFFSGNGSSYVMGTGEETTDDDWDF >gi|227861865|gb|ACKR01000164.1| GENE 4 3768 - 4193 443 141 aa, chain + ## HITS:1 COG:MPN323 KEGG:ns NR:ns ## COG: MPN323 COG1780 # Protein_GI_number: 13508062 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Mycoplasma pneumoniae # 9 135 20 147 153 158 62.0 3e-39 MMTGISKKPLVVYYSSTSNNTARFVEKLDCNSIRIPIKLSKEISVSEEYILITPTYSGGH GTTGAVPKQVIHFLNKLANRQKCIGVIASGNTNFGNSFALAGDVISKKLHVPYLYKFELL GTTEDVNNVNKIIADAGEDND >gi|227861865|gb|ACKR01000164.1| GENE 5 4186 - 6354 1817 722 aa, chain + ## HITS:1 COG:SPy0427 KEGG:ns NR:ns ## COG: SPy0427 COG0209 # Protein_GI_number: 15674554 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 7 722 5 726 726 1013 68.0 0 MTDNLNNDSYISLNALAKFKDEKGNYNFKADKEATKQYLENHIEPRMKKFASLEEKLAYL VDNDYYDKKVLDLYTAKFIKEIFKLAYAQNFSFLNFMGAAKFYKAYALKTNDNKQFLERF EDRAVMNALFLADGNEELALNLVKDIISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDN MESISRAISTSLQLSKRGGGVALCLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYAN QLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKM ALFSPYDIKREYGKPMSDISITKEYQNLLNNPRIKKTFISARKFFQTIAEVQFESGYPYI MYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCNLGSLNIAA AMNSADKLGSLVSDSVQALNRVARSSDLDCAPSIEKGNKANRAIGLGAMNLHGFLATNHI YYDSPEAVEFTGIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSP KTDKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQP VVAPVETRKEADLGRIYVPAYKINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISL TLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIREKVLAGSENLTADECLIQNGAECQKC MI >gi|227861865|gb|ACKR01000164.1| GENE 6 6510 - 7916 1151 468 aa, chain + ## HITS:1 COG:BH0682 KEGG:ns NR:ns ## COG: BH0682 COG3666 # Protein_GI_number: 15613245 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 1 468 1 464 522 318 42.0 1e-86 MYQNYITGQTTLSLNLDFSIPANHIASVISEFVDSIPNEVILETTSNTGRPAYHPAMMLK ILLFAYSRRVFSGRKIERMLEENLPMMILADNRKISYHTINNFRSSDHANKVIKQCFVYF TSLLEDEGLIRENAVFIDGTKIEADANRYTFVWRKAIEKYHAKLKEDVSALYEELINKEV VKAMAEEEAQTSQGLEILAQETEKEVEKLTEKIDREPKAIPGGSKNKAKRRELKKIAHKL RKDFIPRAKKYEEAEEIFAGRNSYSKTDHDATFMHMKEDHMKNGQLKPGYNIQAATTNQY IVDFALFPNPADFRIFELFLEQMKSRGIFDKFQNIVADAGYGSEYNYSILEENYSDKNYQ IPYTQYEKEQTRKYKKDPSKVDNWYYNEEEDYYVDKSGVRFNFKYYSQRKDRFTGMVRNF KIYEADEFQLTEELTQLAKTKTGRQRQIHYNPNWQYLKEKAKETLQSE Prediction of potential genes in microbial genomes Time: Wed May 25 06:41:14 2011 Seq name: gi|227861862|gb|ACKR01000165.1| Lactobacillus crispatus JV-V01 contig00180, whole genome shotgun sequence Length of sequence - 1912 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 50 - 109 4.8 1 1 Tu 1 . + CDS 143 - 1636 1539 ## COG3104 Dipeptide/tripeptide permease + Term 1641 - 1676 2.0 Predicted protein(s) >gi|227861862|gb|ACKR01000165.1| GENE 1 143 - 1636 1539 497 aa, chain + ## HITS:1 COG:lin0564 KEGG:ns NR:ns ## COG: lin0564 COG3104 # Protein_GI_number: 16799639 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Listeria innocua # 5 497 4 492 492 462 51.0 1e-130 MGKRDSDTAFFGQPKGLSTLFFTEMWERFSYYGMRAILLFYMYYAVTKGGLGMDQTTAAS IMSIYGSLVYLSTLVGGWLSDRVWGSRKTVFYGGVLIMLGHIVLALPAGVTALYASIALI VVGTGLLKPNVSDMVGGLYSVEDRRRDAGFSIFVFGINLGSFLAPWLVPWAAQGFGFHIF GNEMNFHAGFSLAAIGMFFGLVQYVWGGKKYLSPESLTPNDPIDKGDLLNIIKWVVIGFV VIALVLAAMAGFGQLNVDNVITLLTILAIALPIYYFVMMLRSSKVTKVERSRVKAYIPLF FAAAIFWGIEESGSVVLALFAAQRTVLHIGNWHFTAANFQSLNPLFIMILTPIFVWLWEH WKKQPTAPGKFAAGLVFAGLSYMWMALPGMLYGTASKVSPFWLVGSWFLVEIAEMLISPI GLSITTKLAPNAYRSQMMSMWFMADATGQAVNAQIVKFYSTGTEVQYFMAVGLVSVAFAV IMFFLVKKINVLMEGVH Prediction of potential genes in microbial genomes Time: Wed May 25 06:41:15 2011 Seq name: gi|227861856|gb|ACKR01000166.1| Lactobacillus crispatus JV-V01 contig00181, whole genome shotgun sequence Length of sequence - 3549 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 24 - 83 7.0 1 1 Tu 1 . + CDS 117 - 470 218 ## gi|227878543|ref|ZP_03996475.1| hypothetical protein HMPREF0506_1476 + Term 549 - 582 4.0 + Prom 596 - 655 5.7 2 2 Op 1 . + CDS 679 - 1131 486 ## COG3279 Response regulator of the LytR/AlgR family 3 2 Op 2 . + CDS 1131 - 1886 691 ## LCRIS_01878 uncharacterized conserved secreted or membrane protein + Term 1891 - 1920 0.5 4 3 Op 1 . - CDS 1913 - 2104 237 ## LCRIS_01876 hypothetical protein - Prom 2134 - 2193 7.3 - Term 2145 - 2182 2.4 5 3 Op 2 . - CDS 2197 - 3399 1382 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 3443 - 3502 13.0 Predicted protein(s) >gi|227861856|gb|ACKR01000166.1| GENE 1 117 - 470 218 117 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878543|ref|ZP_03996475.1| ## NR: gi|227878543|ref|ZP_03996475.1| hypothetical protein HMPREF0506_1476 [Lactobacillus crispatus JV-V01] # 1 117 36 152 152 138 100.0 1e-31 MWIHNIFLGLFSIAEVILVYVSQYFIRAIQHNQNINILGYKSNKISSQKYNVTVLNFKVI EFFVVLNIGLWMIIVVMSQHYLKLSSVIIINVSFMALASVFVILSFIVVLIYYSIKY >gi|227861856|gb|ACKR01000166.1| GENE 2 679 - 1131 486 150 aa, chain + ## HITS:1 COG:SP1915 KEGG:ns NR:ns ## COG: SP1915 COG3279 # Protein_GI_number: 15901739 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Streptococcus pneumoniae TIGR4 # 1 148 2 149 149 97 41.0 1e-20 MKVKLEIDPDAVEDELIIKAKNISPEIEQLYKKLQGIEHNDQIECFRNNVSYYLPLNEIL FFETDAKQVILHTQDKAYLVKHKLYELENILGAGFMRISKSTIINLDQIYGLTRSISDCK IQFHDTYKTVYASRRYYKELRTRLDERRSL >gi|227861856|gb|ACKR01000166.1| GENE 3 1131 - 1886 691 251 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01878 NR:ns ## KEGG: LCRIS_01878 # Name: not_defined # Def: uncharacterized conserved secreted or membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 251 1 252 257 355 80.0 8e-97 MKNSFARILWGVGLIAAAALLVISQLGLLSFKISVWTIILTVIFVACLIKGLLDKSIVVS VFSIAFLVITYAGPLGIKKFLSSWMILFIALLVSMGLSLLFKKDPEIVIKKSFHWNDDDD SDDADTETKVTHHHVQDVIEDGDNIVINQKMAGDSSRYIHSQNLQSINLEASFGNANIYL DDAKAAGDTVVLNLTASMGNVNLYVPLSWQIDNQLSISLGNVIVKGKSNGGGPTLVLKGR ANMGNVVINYI >gi|227861856|gb|ACKR01000166.1| GENE 4 1913 - 2104 237 63 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01876 NR:ns ## KEGG: LCRIS_01876 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 63 1 63 63 103 95.0 2e-21 MLVIGIICLVVAAISYFKYLSEKNGQANQKQAENKNEAKWQRTLAIIFLVFGILLIGYWI ALR >gi|227861856|gb|ACKR01000166.1| GENE 5 2197 - 3399 1382 400 aa, chain - ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 76 400 176 465 466 110 29.0 5e-24 MQSRTEMRKRNNRNNLYLIIIGIIVVIAIICGFVIHNQRVAAERSQREYASTHFNPNVTI YGVQVGKLTVNKATAKINKQADNVVFLRNKKIIAEKDDKVQTISQAEVKNIFTKQHTDLP SKQKYVFKSAKIDEAKKSLQKIQNAVVTYKINGQEFKLKADDLIHEVTYKGGKYKFTDVK KLHAKMEAIDQEVKTLKKSYKFTVPTGNKVNGKTITVKNESYGWGIYVKKAVAAVENAFI NGQDVVDGSKYIYGEGYSTYAHGYGKSNHGIGKNYVVVSIKNQELWVVRKGKVAVHLTDV VTGTENKSNATPKGVWYIMYKESPSVLRGYNDDGSKYASKVQYWMPFTLSGCGLHDASWR SDWSKSAYLTGGSHGCVNIRPAEIRSVWNNVLTNDAVIVY Prediction of potential genes in microbial genomes Time: Wed May 25 06:41:30 2011 Seq name: gi|227861845|gb|ACKR01000167.1| Lactobacillus crispatus JV-V01 contig00182, whole genome shotgun sequence Length of sequence - 7725 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 7, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 20 - 817 703 ## COG1085 Galactose-1-phosphate uridylyltransferase + Term 863 - 918 11.2 - Term 850 - 900 5.1 2 2 Tu 1 . - CDS 901 - 1545 760 ## LCRIS_01873 hypothetical protein - Prom 1568 - 1627 6.3 + Prom 1483 - 1542 5.5 3 3 Tu 1 . + CDS 1604 - 2365 482 ## COG3022 Uncharacterized protein conserved in bacteria - Term 2244 - 2274 -0.9 4 4 Op 1 . - CDS 2362 - 2619 244 ## LCRIS_01871 hydrolase of alpha-beta family 5 4 Op 2 . - CDS 2696 - 3118 555 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 3216 - 3275 7.8 + Prom 3099 - 3158 8.0 6 5 Tu 1 . + CDS 3248 - 3847 777 ## COG0406 Fructose-2,6-bisphosphatase + Term 3849 - 3884 3.5 + Prom 3860 - 3919 7.5 7 6 Op 1 1/0.000 + CDS 3964 - 4488 437 ## COG1309 Transcriptional regulator 8 6 Op 2 36/0.000 + CDS 4491 - 5552 1033 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 9 6 Op 3 . + CDS 5554 - 6228 233 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 6232 - 6272 3.8 - Term 6228 - 6252 -1.0 10 7 Tu 1 . - CDS 6261 - 7673 1428 ## COG4690 Dipeptidase Predicted protein(s) >gi|227861845|gb|ACKR01000167.1| GENE 1 20 - 817 703 265 aa, chain + ## HITS:1 COG:L51063 KEGG:ns NR:ns ## COG: L51063 COG1085 # Protein_GI_number: 15672818 # Func_class: C Energy production and conversion # Function: Galactose-1-phosphate uridylyltransferase # Organism: Lactococcus lactis # 2 258 5 258 261 227 44.0 1e-59 MTNDPLVFQMSIAKGKPQSYRKDKKKNVCPFCDVENLTDIYAKEDDMIWLKNKFPTLRDT WQTVLIESSDHNGDISTYTQEHNRKLMHFALACFEKVQASDQYESIVWYKNYGPHSGGSL IHPHMQIVGFEHEDGYKYIHPNNFEGETLFEKSGVEVNIAEHPVQGYTELNINLLDKNSI DLWADWIQSGAKYLLNIMYNGRCDSYNLFFYPRNDDGICAKYITRFEAPPYFVGYKLSQV NDEITLDKEARRFREFFDNGSVVKA >gi|227861845|gb|ACKR01000167.1| GENE 2 901 - 1545 760 214 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01873 NR:ns ## KEGG: LCRIS_01873 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 214 1 214 214 416 99.0 1e-115 MNPDFAIVLNYQLNDKADADFLVKTARNIGARAVMTDRQTEDFKTACAKYTIFLANPENS TDLTKDNVIDTMVNNRKAGKTTIINVPVEAGKFSAATQAMLDTINDWMHQFGHAFNEGKT SALTSSDGFILENRHANYQKYVFLPSPLPDKIVVEGLVEEPNRVEWIEHRSDLDFNYKDQ KLTINLVKPDDEFAWQVLRIQAHRPEDDILETKF >gi|227861845|gb|ACKR01000167.1| GENE 3 1604 - 2365 482 253 aa, chain + ## HITS:1 COG:YPO0462 KEGG:ns NR:ns ## COG: YPO0462 COG3022 # Protein_GI_number: 16120791 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 1 245 1 253 258 148 37.0 8e-36 MKIIIAPAKIMKIDRDSFPIQSKPQFLDKTRILERFLKSRSNEQLKDLWHASENVTKQSI LQLENMNLDERLTPAILAFSGIQYQYMAPDLFTQPALDYIQKNLRILSGFYGMLRPFDGV CPYRLELNTKMVGFRDYSLYYFWGSDIAENLFQEDNIVIDLASKQYTRLVKPYLSQGRQL ITVDFQELKNGKWKTVGVHAKMARGEMVRYIAEKQIKNPTDLQDFNDFEFQFEPDVSTKD HYVFRTEFDFTRR >gi|227861845|gb|ACKR01000167.1| GENE 4 2362 - 2619 244 85 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01871 NR:ns ## KEGG: LCRIS_01871 # Name: not_defined # Def: hydrolase of alpha-beta family # Organism: L.crispatus # Pathway: not_defined # 1 85 167 251 251 176 100.0 2e-43 MKLGGFYLRTAQVLPIYEVSARFSGPVSVIYGTNDQVVNPKYAKKYHDIYENSELHAITD ADHRFTGQYKKSASDLTAQFLKPLF >gi|227861845|gb|ACKR01000167.1| GENE 5 2696 - 3118 555 140 aa, chain - ## HITS:1 COG:CAC3665 KEGG:ns NR:ns ## COG: CAC3665 COG1073 # Protein_GI_number: 15896898 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Clostridium acetobutylicum # 4 128 11 141 265 79 38.0 1e-15 MSRVTIERDGLTLVGDREEPFGEIYDMAILMHGFTANRNTELLRQIADDLRDENVASVRF DFNGHGESDGKFEDMTVPNEIADGKAILEYVRTDPHVRNIFLVGHSQGGVIASMLAGLYP DVIKKVVLLGTSCSIKRRCT >gi|227861845|gb|ACKR01000167.1| GENE 6 3248 - 3847 777 199 aa, chain + ## HITS:1 COG:CAC1385 KEGG:ns NR:ns ## COG: CAC1385 COG0406 # Protein_GI_number: 15894664 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Clostridium acetobutylicum # 1 195 2 190 191 101 34.0 1e-21 MEIVFIRHGQTDVNKDNRIQGAQVDADLNEFGREYAKKSAAKFDENKFDVVYSSPMKRAV ETARIFTKGKKKLNLDKRLLEFDFGDWDGKKMDDIAKEYPDVVDPWGKVTRNYVKYAKNG EGYEEFEARCANFLDEIYQKYPEGKVLVVAHGRLIRMMAAHYLSNGDMDKIDTPNNCALS KFSVRDGVARLYYYNRVLV >gi|227861845|gb|ACKR01000167.1| GENE 7 3964 - 4488 437 174 aa, chain + ## HITS:1 COG:L53789 KEGG:ns NR:ns ## COG: L53789 COG1309 # Protein_GI_number: 15672643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 103 1 109 189 61 37.0 7e-10 MVKQTFKNLPSAKRRRIEAVLLEEFSTYPLADAKVSHIVKNANIARGAFYKYFDDLIDAY VYMYHIAIEDIHARMSPNEKFDPNHFYARVVKFIDKVQYSKYEPMMKLHMSQNEYLIPHN FKIYSRQLLNMGPQLWSAMVLSHEVINLCLSDPENQEKNLARYKKSLDILAKGM >gi|227861845|gb|ACKR01000167.1| GENE 8 4491 - 5552 1033 353 aa, chain + ## HITS:1 COG:L130944 KEGG:ns NR:ns ## COG: L130944 COG0577 # Protein_GI_number: 15674237 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 1 352 2 357 357 232 40.0 7e-61 MFLALKEIKHEKLRYGLIILMIFLISYLIFMLSSLAVGLASQNTQAIENWNAQKIVLNKN ANISMSQSILTKDDLKNAKIGKNEAIIGQLGIVVKKKGKNSISAQFLGIKKDQFIYQDQD IIAGKKAKNGNQITVDSSFKDKGYKLGDQISLNGSKKKYKIVGFVNNAKINIAPIVYGSM KTWKKLRMVAPNVAASAVVSKNSNYKFNYKDAKTYPIQAFINKLPGYTAQNLTFELMIGF LFVISLIVIAVFLYILTMQKMHNFAVMRAQGIPSKTLVGATISQSIILVAIGVVIAIILM WLTDLTLPAAVPMTFTPAIMISGTLGMLVMGIIGSLIPIRSILKVDPAKAIGE >gi|227861845|gb|ACKR01000167.1| GENE 9 5554 - 6228 233 224 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 208 12 227 329 94 31 2e-19 MAVIELKDVNKVYGKGEAKVAALKDINFQANKGEVVLIMGPSGAGKSTFLTIAGSLQKPT SGEILINGRDISNFSAKQSGELRLNKIGFVLQAYNLVPFLTVKEQFTLIDKVKKQNNLSQ DKLQGLLKQLGIEKLVNKYPNELSGGQQQRVAIATALYANPDILLADEPTASLDTQNVEE VGQLFKDLAKKRDKAVILVTHDPRLEKYADHIYEMMDGLMTKKK >gi|227861845|gb|ACKR01000167.1| GENE 10 6261 - 7673 1428 470 aa, chain - ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 7 467 8 473 474 302 36.0 1e-81 MKVSAWRSSCTSILIGKKASLSGSIIIGRNEDAKTAWPKHLAFNPHRDNVQKNHFKSKDN KFEMDLPTASYSYSSTPEWTDKYGVFEEDGINEYHVAMSATESAYANDRVLAVDPFDTDK GILEEAMVTVVLPYVKSAREGVQRLGEIVEKYGAAEADGILFGDRDEAWYMEIGSGHHWV AQRIPDDSYAVVANQLAIQEIDFASDDFMYSQDLQKFVYDNKLWPKNQPFIWRDIFGTHD DSDLHYNTPRVWSGQRLLTPSVAQEPESFNLPFIRKPDAPISAQDAQRVLSDHYNNTAYD LTNQKNRNNATFRPISVATTQESHLLELNGENMIHWLAMGVAAQSVYVPFYPQGTKVPNT WKNGKETYSPNSAYWVFKLASVLVDRNWGKYGTALSNTQSTTNEKLLQIRQQYDQKLAQE KDQEQQIKLVDEANAKLAKTATDAYKELIAKLITEQTGDSPLRFQMDPNL Prediction of potential genes in microbial genomes Time: Wed May 25 06:41:36 2011 Seq name: gi|227861843|gb|ACKR01000168.1| Lactobacillus crispatus JV-V01 contig00183, whole genome shotgun sequence Length of sequence - 300 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 164 64 ## gi|293379943|ref|ZP_06626047.1| conserved hypothetical protein - Prom 240 - 299 4.5 Predicted protein(s) >gi|227861843|gb|ACKR01000168.1| GENE 1 2 - 164 64 54 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293379943|ref|ZP_06626047.1| ## NR: gi|293379943|ref|ZP_06626047.1| conserved hypothetical protein [Lactobacillus crispatus 214-1] # 1 54 1 54 166 95 100.0 9e-19 MNSIVTEIANIIKSEDNYIKRERKIICFFLNLIKEIMALALAKVDDEMITKVKA Prediction of potential genes in microbial genomes Time: Wed May 25 06:41:40 2011 Seq name: gi|227861839|gb|ACKR01000169.1| Lactobacillus crispatus JV-V01 contig00184, whole genome shotgun sequence Length of sequence - 1760 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 370 - 1059 716 ## EF1884 IS116/IS110/IS902 family transposase 2 1 Op 2 . + CDS 1106 - 1612 373 ## COG3547 Transposase and inactivated derivatives Predicted protein(s) >gi|227861839|gb|ACKR01000169.1| GENE 1 370 - 1059 716 229 aa, chain + ## HITS:1 COG:no KEGG:EF1884 NR:ns ## KEGG: EF1884 # Name: not_defined # Def: IS116/IS110/IS902 family transposase # Organism: E.faecalis # Pathway: not_defined # 1 215 1 214 416 166 41.0 6e-40 MKLFVGIDVSSKDLQVVALDSEDQNKRLINDSFVNDLYGASELKKQILDLAQNKHYDQII IGMEATSIYSFHPAYFFQNDEDLQKLNVETDVINPKETSRFHKVFEESKTDPLDAYYIAL YLSFGHYRVSIARQDNYLALERLTRTRYELVQELTRTKQHFIEALYYRVNKLITVDKDKI NTPLFGATMMSIVTDSKTLDEIADMPTEDLISYLQVKRQRTLFRSRYLG >gi|227861839|gb|ACKR01000169.1| GENE 2 1106 - 1612 373 168 aa, chain + ## HITS:1 COG:FN0509 KEGG:ns NR:ns ## COG: FN0509 COG3547 # Protein_GI_number: 19703844 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 6 164 228 386 391 73 34.0 1e-13 MTDSIDAVLSVHYNMIQSFNESIKDLEKAIDRIVDALPESKILESIPGIGKTYTAGIIAE IGSIDRFDKEEQLAKYAGLTWNQYQSGDHSNEHTPMARTGNRYLRYYLIEAANLARLHDP VFKKYYQKKYDEAVYSPHKRACTLTARKLVRVIFKLLKDDKLYRTPRS Prediction of potential genes in microbial genomes Time: Wed May 25 06:41:44 2011 Seq name: gi|227861837|gb|ACKR01000170.1| Lactobacillus crispatus JV-V01 contig00186, whole genome shotgun sequence Length of sequence - 626 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 36 - 95 10.0 1 1 Tu 1 . + CDS 201 - 624 225 ## lhv_2508 putative transposase Predicted protein(s) >gi|227861837|gb|ACKR01000170.1| GENE 1 201 - 624 225 141 aa, chain + ## HITS:1 COG:no KEGG:lhv_2508 NR:ns ## KEGG: lhv_2508 # Name: not_defined # Def: putative transposase # Organism: L.helveticus # Pathway: not_defined # 1 139 12 150 150 247 90.0 8e-65 MDSIINKIADNIHDFSVSDQAFTRCRKLNSTDLIKLILNMGAGSLNSEIFHAFPDINSRM TASAFEQQKAKLKPECFKEIMLELSRANNVLQLLDNQYLVVAIDGSDFDQPFNPESENIF RGKDGRIYCQLHVNALYDVLN Prediction of potential genes in microbial genomes Time: Wed May 25 06:41:47 2011 Seq name: gi|227861835|gb|ACKR01000171.1| Lactobacillus crispatus JV-V01 contig00187, whole genome shotgun sequence Length of sequence - 655 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 568 313 ## COG3547 Transposase and inactivated derivatives Predicted protein(s) >gi|227861835|gb|ACKR01000171.1| GENE 1 1 - 568 313 189 aa, chain - ## HITS:1 COG:SPy0732 KEGG:ns NR:ns ## COG: SPy0732 COG3547 # Protein_GI_number: 15674786 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 4 189 11 194 196 147 44.0 9e-36 MSLKGIAFKHALRTADKLIELAYQAYQVVSCSSIEVEQVQYYAHRLLNLSDQRENLIARM VKLAKSLPNHDLENLESIPGFAQTTAVRVLAELGDLRRFSNPNKINAFIGIDPGRYQSGE MDSNLSITKHGNAVARKLLYRAIGQIDNAAKTNPCHIADYYESKKLSSQTKGFKKIAIAS IHKLIRTIY Prediction of potential genes in microbial genomes Time: Wed May 25 06:41:47 2011 Seq name: gi|227861834|gb|ACKR01000172.1| Lactobacillus crispatus JV-V01 contig00188, whole genome shotgun sequence Length of sequence - 208 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:41:49 2011 Seq name: gi|227861827|gb|ACKR01000173.1| Lactobacillus crispatus JV-V01 contig00189, whole genome shotgun sequence Length of sequence - 5588 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 4, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 65 - 517 616 ## LCRIS_01076 trp repressor binding protein + Term 540 - 579 3.6 2 2 Tu 1 . + CDS 928 - 3441 1953 ## COG0178 Excinuclease ATPase subunit + Prom 3493 - 3552 4.3 3 3 Tu 1 . + CDS 3592 - 4581 837 ## COG2040 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) + Term 4752 - 4800 6.4 - Term 4793 - 4827 2.0 4 4 Tu 1 . - CDS 4837 - 5469 585 ## COG0671 Membrane-associated phospholipid phosphatase - Prom 5505 - 5564 7.9 Predicted protein(s) >gi|227861827|gb|ACKR01000173.1| GENE 1 65 - 517 616 150 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01076 NR:ns ## KEGG: LCRIS_01076 # Name: not_defined # Def: trp repressor binding protein # Organism: L.crispatus # Pathway: not_defined # 1 150 1 150 150 289 98.0 2e-77 MAKKTLIIYYSWEGNTKNMAKKINGEIENSELKEVTVAPDAFDSDMYKTNDIALDQIQGK VPYPEIQMDDIDFNNYDLILVGSPVWSGYPATPIKPLLEKMKNYRGEVASFFTSAGTNHK AYVSHFKEWANGLNVVGVARDDSEVRDWVK >gi|227861827|gb|ACKR01000173.1| GENE 2 928 - 3441 1953 837 aa, chain + ## HITS:1 COG:MA3325 KEGG:ns NR:ns ## COG: MA3325 COG0178 # Protein_GI_number: 20092139 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Methanosarcina acetivorans str.C2A # 149 830 246 933 993 462 38.0 1e-129 MTIPTKIEVRGGRVHNLKNIDVDIPLNKFVAISGLSGSGKSSLAMGILYEEGSRRYLDAL STYMRRRIKQGNQVDVTSVKHIPSALALRQRPSVPNERATVGTLSETFNVLRLIFSRLGS PVCPNGHHLKPSLAIAKAMSMSGEQMGQLTCPVCGVKFYAPSAEQFAFNSDGACTECGGT GKIRQLDESKLITDENLSIKDGAVASWSLPGRNFMPNVAEHAGVRIDIPYKDLTDKEKDF VLNGPEKKYKMDFLSGTGRVFHDFNALYENARQAVYRSAKSSKSERAQKRIAEFFTYSTC PLCHGSRLKPELLQQLVGKQNINQVAEMQLGDLVTWVKDVQATLPTNMHKMAHSIIQEFL DNLQPLLDLGLDYLTMARSGNTLSTGELQRIQLARTLRTETTGILYVLDEPSIGLHPANV AGLIKVLRKLVAQGNSLVVVDHNVDIIKAADEVIEIGPGSGKKGGQILDQGSITAIKHDQ HSLIRPYLDGSAKLLAREPATRINSDSILFEVKQYFNLHDVKTKIPLNQLTAVTGFSGAG KTSLILDSLVPAIIAKSQSEKLPKQISRFSSPISNVVSVDASPIGKSTRSTVATYTSIMD NLRKLYASQPLAKKKHYTSSWFSYNNKQGACPTCGGTGIVTLDIQFLPDMQQVCSTCHGD RYNQDVQKVKWHDLSIVDVLNLDVNEALPIFVKVPKIERELKLLKEVGLDYLHLGEDTPT LSGGEAQRLKLVTHLSHKQNDALFVFDEPTIGLHPLDVKVLVQVMQKLLDQGATIITITH DLNLIVNCDYMIDLGPHGGKNGGRIVQEGKPLELKQKPESLTAHYLANYLHDFKNLF >gi|227861827|gb|ACKR01000173.1| GENE 3 3592 - 4581 837 329 aa, chain + ## HITS:1 COG:CAC3348 KEGG:ns NR:ns ## COG: CAC3348 COG2040 # Protein_GI_number: 15896591 # Func_class: E Amino acid transport and metabolism # Function: Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) # Organism: Clostridium acetobutylicum # 12 307 15 314 314 233 41.0 3e-61 MNLLKQIRDRGLILDGAMSTALEKLGIDTNNELWTAIALEHNLAQIYQVHMNYFKAGAQM AITDTYQANIPAFEKHGFTQDQATKLITNAVQIAKKARDDFAKTTGIHNYVAASVGPYGA YLAQGDEFRGDYSLTTEEYLNFHLPRLKILLANKPDCLALETQPKLDEVVAILDWLKENA PEIPVYVSFTLHDTTKISDGTPLKRVVQKLNEYDQVFAIGANCFKPFLATAVIDKIHDFT DKQIVIYPNLGGVYNEFERNWIPFNAKFDFKKLSQEWYEHGARIIGGCCSTTEKEIGQIS AFFKTINNAKSKSVKSELKKVKNDSNIQI >gi|227861827|gb|ACKR01000173.1| GENE 4 4837 - 5469 585 210 aa, chain - ## HITS:1 COG:SP0489 KEGG:ns NR:ns ## COG: SP0489 COG0671 # Protein_GI_number: 15900403 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 204 1 208 216 83 30.0 3e-16 MRKKNIYSICIGLPIFLILAFSIMAHASWVTGFDNFFEGLVHSIPNLQSIMHVITFLADT KVDLVWMLLIAVILWLKKQRPLSASIVISLVTADAFGWIVKHIIQRARPTAHLAADDGFS FPSGHTLGMAIIVFWLILILIPALVKNKTAKIWLTVLLAIWLVLVMISRVYLYAHWPSDV CGSVAMGLMWIGLVDAIWDKVTPQTDKNNF Prediction of potential genes in microbial genomes Time: Wed May 25 06:41:57 2011 Seq name: gi|227861812|gb|ACKR01000174.1| Lactobacillus crispatus JV-V01 contig00190, whole genome shotgun sequence Length of sequence - 14358 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 7, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 44 - 103 2.9 1 1 Op 1 . + CDS 167 - 616 521 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 2 1 Op 2 . + CDS 633 - 1247 606 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 3 1 Op 3 1/0.250 + CDS 1300 - 2499 1089 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 2506 - 2553 1.1 4 2 Op 1 . + CDS 2565 - 2876 393 ## COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase 5 2 Op 2 1/0.250 + CDS 2894 - 3394 319 ## COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase 6 2 Op 3 . + CDS 3397 - 3963 567 ## COG4720 Predicted membrane protein 7 2 Op 4 . + CDS 4038 - 5243 1391 ## COG1376 Uncharacterized protein conserved in bacteria + Term 5254 - 5285 1.0 + Prom 5588 - 5647 13.8 8 3 Op 1 . + CDS 5689 - 6144 534 ## LCRIS_01092 acetyltransferase, GNAT family 9 3 Op 2 . + CDS 6158 - 7441 1194 ## COG2195 Di- and tripeptidases + Term 7568 - 7606 1.2 - Term 7751 - 7792 -0.5 10 4 Tu 1 . - CDS 7794 - 9056 929 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase + Prom 9094 - 9153 7.2 11 5 Tu 1 . + CDS 9197 - 9598 396 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Term 9612 - 9654 5.3 12 6 Tu 1 . - CDS 9663 - 11597 1957 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 11639 - 11698 10.5 + Prom 11708 - 11767 6.3 13 7 Op 1 3/0.250 + CDS 11792 - 12517 732 ## COG2188 Transcriptional regulators 14 7 Op 2 . + CDS 12527 - 14194 1380 ## COG0366 Glycosidases + Term 14264 - 14307 6.9 Predicted protein(s) >gi|227861812|gb|ACKR01000174.1| GENE 1 167 - 616 521 149 aa, chain + ## HITS:1 COG:CAC3445 KEGG:ns NR:ns ## COG: CAC3445 COG0454 # Protein_GI_number: 15896686 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 1 144 1 143 147 159 57.0 2e-39 MEIKEIKSNKKQYIDLLLLADEQESMIDRYLERGIMYILIDKGKVRSECVITVENGNTVE IKNIATYPEDQGKGYAKHLINFIAKKYQNKYQILQVGTGDSPLTIPFYEKCGFKRSGKIK DFFVKNYDHPIFEAGHQLVDMIYLSKRLN >gi|227861812|gb|ACKR01000174.1| GENE 2 633 - 1247 606 204 aa, chain + ## HITS:1 COG:SP0074 KEGG:ns NR:ns ## COG: SP0074 COG0110 # Protein_GI_number: 15900019 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Streptococcus pneumoniae TIGR4 # 1 193 1 182 185 169 44.0 4e-42 MEENTKKMLAGKPYRPDTEELKKISSLAHRLSRDYNMTTDEDEVERKAIIDRLFPNHGQN VYLQGPIEVDYGQFTHLGDNFYSNFNLTILDTCPVTIGNNVMCGPNVTFATPLHPLLPTQ RNARKQSDGKIADIEYGAAITVGDNCWLASNVTVCPGVKIGKNCVIGAGSVVTKDIPDNS LALGVPAKVIRQITDQDHLNNYPY >gi|227861812|gb|ACKR01000174.1| GENE 3 1300 - 2499 1089 399 aa, chain + ## HITS:1 COG:lin0544 KEGG:ns NR:ns ## COG: lin0544 COG1680 # Protein_GI_number: 16799619 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Listeria innocua # 83 334 102 344 398 86 28.0 1e-16 MKKINANIMGRIYITLLGEFKTKRINLKKTLIKSTIWLTIAASMPVGMAIANANSSTVQA ASYNKTEMRSFVRNTLASYYARGTVVIVKDGQPQQISYGYGYYGKRLGAGNSKVVYPVCS LQKVITGAIITQLISAGKFTQYTKISKWYPNLKGADNITVGNLMTHTSGLTAADTEVNRG RVYSEADAINWVVNKLNSTTQNQPGNFSYNNTNYILLAGIIRQETGQSYKQNVQERIINK LGLKRTYFLEDIPAGMTDGISYTWNQKNYQWAQYVKKTQASQLVGAGNLFSAPMDYYRIQ LGLTNGQILSRTDFDYMTHLTSRSSNGYSGGLYMKNNDNLKLAYGNLYNTHFGNWIQMTT DNQNGLIMFLNQTQNDENRNKQIGYQILNHIKANTFSAK >gi|227861812|gb|ACKR01000174.1| GENE 4 2565 - 2876 393 103 aa, chain + ## HITS:1 COG:CAC1622 KEGG:ns NR:ns ## COG: CAC1622 COG2240 # Protein_GI_number: 15894900 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal/pyridoxine/pyridoxamine kinase # Organism: Clostridium acetobutylicum # 10 84 12 86 290 76 42.0 1e-14 MVNGGVLVSQDLSCAGQVSLSAALPVLGACGLSPTVLPTAILSTHTGGFGENTFLSLNNE MAKIMAHWQKVGFDFSAVYLGYLGKRALDFWTEKISYFKQKIN >gi|227861812|gb|ACKR01000174.1| GENE 5 2894 - 3394 319 166 aa, chain + ## HITS:1 COG:CAC1622 KEGG:ns NR:ns ## COG: CAC1622 COG2240 # Protein_GI_number: 15894900 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal/pyridoxine/pyridoxamine kinase # Organism: Clostridium acetobutylicum # 1 141 114 258 290 88 36.0 5e-18 MGDHGQLYRGIDENYVIKMRNLVKSATILTPNMTEAAFLLGKKATSNSLKTATEFAAELS SQFGVSNVIITGISLNKEKIAEVGITADHSWSLIQKKLPGNYFGTGDLFASAFFAALMHK ENLEKACSIAADFVAQAIRETPKQDSRLGPNYAAALPDLLKRWSNN >gi|227861812|gb|ACKR01000174.1| GENE 6 3397 - 3963 567 188 aa, chain + ## HITS:1 COG:SPy1208 KEGG:ns NR:ns ## COG: SPy1208 COG4720 # Protein_GI_number: 15675172 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 19 178 14 171 185 75 33.0 5e-14 MQIFRENKNSLQALVLTGLFAAIIYIGIWVLRIPVPAMVGRPFIHFGNTLTAVAILYLGY RNGMIAGIIGLGGFDLLNGYAATSWLTMLEVVVVASVLTAVYRGMHYQDSKRNIIILGII AGVTKIFTTYCVSIVEALMVGTSFKVALVGAFVSLPATVINSISTAICTPILYFALRDAS RLIIKKVR >gi|227861812|gb|ACKR01000174.1| GENE 7 4038 - 5243 1391 401 aa, chain + ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 38 400 152 465 466 112 30.0 1e-24 MNEDLKKKNKRNNIIILTIAVLIIVGVIAGFGIHNHRVATQAAAEKYAKTHFNPNVTIDG VKVGKLTVTKAMAKVNQKAKNQVELKNNKLVYSYNTTVQSLDESETKAFFKKQQTKIPST QTYKFTTSNLATAKKKLTDLSKAEITYKINGKNYQLKAKDLLNNVTYRDNRYQFGDTSKL TTKLNQIDKEVSTLHKSYKFTVPKGNKVKGKTITVKNKTWGWGVYVKKTQRLLLEAFAKG QKNFDGADALYGLGYSTYPHGYGYSNKEIGDTYAVVSLKKQEVWLIKKGKLAVHLRDVVT GTMEGSKGDQTPRGVWYIHYKESPSTLRGTNDDGSSYASPVKYWMPFTLSGCGFHDASWR TDWSKTAYLKGGSHGCVNVKPSEIRSVWNNIKKGEPVIIYE >gi|227861812|gb|ACKR01000174.1| GENE 8 5689 - 6144 534 151 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01092 NR:ns ## KEGG: LCRIS_01092 # Name: not_defined # Def: acetyltransferase, GNAT family # Organism: L.crispatus # Pathway: not_defined # 1 151 1 151 151 307 98.0 1e-82 MQVRTRCFQSLDYEDLCRVHDAARLQEMKIGGVEKYFIPFKEAPYWYNFFDSEIRIVEVN NEFAGFAAYKPHNLAYFYIDPQFQRRGIGDQLLASVLPNIRRPIRLEVFSANIAAKALYA KHGFKIIKTVKESWWSDPKSEPVSSDTMELM >gi|227861812|gb|ACKR01000174.1| GENE 9 6158 - 7441 1194 427 aa, chain + ## HITS:1 COG:FN0733 KEGG:ns NR:ns ## COG: FN0733 COG2195 # Protein_GI_number: 19704068 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 10 407 10 406 412 369 46.0 1e-102 MSFYNLDYEEKRFIQLAKKNTRSYYEHHDQIPSSPGQVELAKELVKEMKELGLDAYYNEK TAFAIGKLSANTAEKVTPIGFFAHVDTADFNAVNIKPQIHENYDGQKIILDEKDNIVLDP TEFPDLLNLKGQTLITSDGHTLLGVDDKAGITGALAMLKYLTEHPEIEHGDVFVAFGPDE EIGCGGQYFDPADFPNVEFAYTLDNGRPGDFEYDTFNASEVTIHIKGTVVHPGEAYGLMV NATTLMNDFLSNLPQDQVPEKSRNHDGYFLVLHAQSNVDHADISMIIRDFDQSEYNRKEQ FIRDIVKKMNKKYGNRFTVNIREQYENIYNYIKDKPYIVNLALDAYRKSGLKPNVQSFRG GTDGNFISPKGIPTPNLFNGGGNYHGRYEYVTVEQIDKLAEVLTNIVTEHLRQTRTGRNE KPLEKYW >gi|227861812|gb|ACKR01000174.1| GENE 10 7794 - 9056 929 420 aa, chain - ## HITS:1 COG:SP1790 KEGG:ns NR:ns ## COG: SP1790 COG2256 # Protein_GI_number: 15901619 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Streptococcus pneumoniae TIGR4 # 7 405 5 412 423 288 38.0 2e-77 MNFKTPIAEQMRPQTLADMVGQSELLGPGKALRNIIKQHVNISLLLWGPPGTGKTSLAQI IAKENDYPFASFNASIDNKAQLNNIINAYKYQTLVLLIDEIHRMTKNLQDFLLPYLENGH VLLVGSTTENPIMSIVPAVRSRCQIFEFNPLTEDDIAAVLNKACTKVLKLVDHQVEKNSL NLIAAAADGDLRIALNILETVHALNPKKITLANVKSFTKQQFFSYDKKATKHYDYLAAYS DSMAGSDTDAALYYLAILLKNGDLASVVRRLREIPYTYIGLANPQQVTQIVTAANQAEKI GMPKAKYPLMFATMLMCISPKSGAFEEIWERLDQDSDHPNRYPMPNSLRDFHYKHAKEIT GAGLAESPFQAPHQIAKQNYMPKGLKGKQYYFPKDNQNERRLYEQYLKLHRYIYGEDYQK >gi|227861812|gb|ACKR01000174.1| GENE 11 9197 - 9598 396 133 aa, chain + ## HITS:1 COG:BS_yjbD KEGG:ns NR:ns ## COG: BS_yjbD COG1393 # Protein_GI_number: 16078215 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Bacillus subtilis # 1 131 1 131 131 127 50.0 6e-30 MITLYMSTSSASSRKARAWLNKYHLSFKEKNVFKELSKEDVLHLLSLTENGTEDILSTRS QSFKQLKNKLNEDLSLSKMVALITQNPGLLKRPIIADDHRMQVGYNEEDIRQFLPRDIRK AELIEAQRIADAA >gi|227861812|gb|ACKR01000174.1| GENE 12 9663 - 11597 1957 644 aa, chain - ## HITS:1 COG:L37906_2 KEGG:ns NR:ns ## COG: L37906_2 COG1263 # Protein_GI_number: 15672409 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Lactococcus lactis # 273 637 3 398 406 272 42.0 1e-72 MNKNEIALLAPANGQVIALSKTSDPIFSKGTMGDGFGLTPTDNTVLAPVSGTISMIAETK HAIGITTKDGLEVLVHMGVDTVGLKGEPFDVVIKNGQEVKAGDQIATMNIEMIKAKDLDT TIMTLITNSSMKLDGLDVTEGKAEAGDTVARAYLKESKEDSSDKKLSYDELATFIIKNVG GKDNINNLIHCITRLRFYLKDESKANDDILKNQRGILDVMHAGGQYQVVIGNEVTNVYDA VMKQLPGLSDNPSPQTNNQDDGKNPVSRAFSNLIGFITGSMSPVIGVIAASGIIKGLLAL LTLPQLGALLSVKSPVYVTVSAMADSAFFFLPVLVGFAAAKRLGSDPMIAAVIGGFLVYP QMITWGKSMTTMFSLGSWNFQFLNYSYSIFPMILAAWLAKECEQWLKKVLPSYLQMIFTP LITILVVSTITLVITGPIIQGAANGIAVFINWLVSASGWVGGLIIGAFYQLLVIFGLHWG VVPLVAQQIASTGQSSLNAIICATMVSQGAAVLAVAIKSKKADMKELGIAAAISAFCGVT EPAIYGINLRYKKVFASGCIGSAFGGLVTGLMHGTMYGFTGGLIGFSSFFNPAHPTPLNS FYTFLIASAVSIIVSFIAVWVWGYNDNMTMGKKVAKKQRPGSAK >gi|227861812|gb|ACKR01000174.1| GENE 13 11792 - 12517 732 241 aa, chain + ## HITS:1 COG:lin1221 KEGG:ns NR:ns ## COG: lin1221 COG2188 # Protein_GI_number: 16800290 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 9 237 14 237 237 160 44.0 2e-39 MTKAKSELIAQDLASKIKHQQFKEGERLPSENQLTELYGASRETVRKALQQLTSLGLIQK IKGKGSIVLNLEKFSFPISGISSFAELNKSLGMNAKTKLLNDEMVDDLPAIFKKFFPEQK KHAGIYVERLRMINDEPEVLDCDFLFNPPITELPSEEAEKSIYNYLENKLGLDISYATKA ITVEEIDADLQEKLQLDSKEAVLVASHNFLADTTLFQLTLSFHNPKKFKFIDFARRQKIK L >gi|227861812|gb|ACKR01000174.1| GENE 14 12527 - 14194 1380 555 aa, chain + ## HITS:1 COG:SPy2096 KEGG:ns NR:ns ## COG: SPy2096 COG0366 # Protein_GI_number: 15675852 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pyogenes M1 GAS # 1 552 1 538 542 603 54.0 1e-172 MTDLGKKVIYQIYPKSFYDSNGDGVGDIPGIIAKIDYIKKLNVDMIWFNPFFVSPQNDGG YDIADYYRIDPRFGTMSDFEELTKKLKEIGVGVMLDMVLNHCSTENIWFKKALAGDEKYR KFFYLRKAKPDGSLPNNWQSKFGGPAWAKFGDTDYYYLHLYDPTQADLDWHNPEVRQELF KVINFWRSKGVHGFRFDVINVTGKDEKLVDSTGDPSQEKSLYTDTAVVHQYLKEMNRSTF GQDPDSITVGEISSTTIANSIEYSKPSEHELSMVFTFHHLKVDYKNGEKWSKEPFDFMKL KHLFTEWQEKMDQGGGWNALFWNNHDQPWALNRFGDTGKYREKSSEMLATAIHCMRGTPY IYMGEEIGMMDPHYSSIHDYVDVEAKNAFAALKQKGISDDEAFAIVKTKARDNSRVPMHW DDSKFAGFSESKPWLLPTDQDRINVEKELHEGEIFAYYQKLIKLRKHEQLISDGHIRMFL KDDPQIFAYERFLKDEAKKILVFTNFYGTDHVAPLPEQYQNKNYQLVLSNYSAQDGKLGE NISLKPYEALVIKIN Prediction of potential genes in microbial genomes Time: Wed May 25 06:42:05 2011 Seq name: gi|227861798|gb|ACKR01000175.1| Lactobacillus crispatus JV-V01 contig00191, whole genome shotgun sequence Length of sequence - 16309 bp Number of predicted genes - 13, with homology - 12 Number of transcription units - 6, operones - 2 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 12 - 449 467 ## LCRIS_01098 putative protein without homology + Term 475 - 542 -0.0 - Term 675 - 718 -0.9 2 2 Tu 1 . - CDS 732 - 2009 1632 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 2059 - 2118 10.2 + Prom 2219 - 2278 10.2 3 3 Tu 1 . + CDS 2370 - 2735 619 ## LCRIS_01100 pyridoxine 5'-phosphate oxidase V related favin-nucleotide-binding protein + Term 2755 - 2791 7.3 + Prom 2742 - 2801 5.1 4 4 Op 1 . + CDS 2839 - 4065 838 ## COG1409 Predicted phosphohydrolases 5 4 Op 2 . + CDS 4100 - 4258 106 ## + Term 4267 - 4307 5.0 + Prom 4291 - 4350 8.3 6 5 Tu 1 . + CDS 4403 - 6496 1688 ## LCRIS_01103 hypothetical protein + Term 6528 - 6560 2.4 + Prom 6546 - 6605 4.8 7 6 Op 1 . + CDS 6634 - 9852 2627 ## COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases + Prom 9867 - 9926 4.2 8 6 Op 2 . + CDS 9947 - 11248 1302 ## COG1106 Predicted ATPases 9 6 Op 3 . + CDS 11229 - 11810 572 ## EF3241 abortive phage resistance protein, putative 10 6 Op 4 27/0.000 + CDS 11825 - 13276 1152 ## COG0286 Type I restriction-modification system methyltransferase subunit 11 6 Op 5 . + CDS 13266 - 14708 840 ## COG0732 Restriction endonuclease S subunits 12 6 Op 6 . + CDS 14755 - 16095 831 ## Apre_0348 hypothetical protein 13 6 Op 7 . + CDS 16098 - 16308 137 ## gi|227878605|ref|ZP_03996528.1| hypothetical protein HMPREF0506_1529 Predicted protein(s) >gi|227861798|gb|ACKR01000175.1| GENE 1 12 - 449 467 145 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01098 NR:ns ## KEGG: LCRIS_01098 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 145 1 145 145 282 97.0 2e-75 MLVDSDSFISVEKKLIKQGKLQKFEKENGPVTSLMMISKGKIADDMRYQLVENLAHHPLH IVYKASFDQYDETLNCIFDRQTKKPITGLWYTPQRRDFTEPPKKMVQLFISEIVNNLTDS TGIDLPIWVFINDKAHLAVTKKDLS >gi|227861798|gb|ACKR01000175.1| GENE 2 732 - 2009 1632 425 aa, chain - ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 37 365 18 356 419 170 32.0 6e-42 MTKKGLTKYLSIGAVTTAALFLAACSNQKSTTSAKNSKTEITMWHAMNGAQQKTLKQLTN KFEKENPNIKVKLENQGNYPQLQGKITSTQQNPNNLPTMTQAYPGWLYQAAQNKMLVNLT PYINNSTYGWGSVAKSNIRPELMKGAQINGVQYGIPFNKSIEVLTYNKTLLKKYGLKVPK TMAELKSVSKAIYEKSNHKIVGAGFDNLANYYVLGLKNEGQTFGRSIKLDSAASKKIINF YADGVRNGYFRTAGSERYLSGPFSNEKVAMYIGTSAGESYTKMGVGNKFTYGVAPRPGEY TISQGTDLYVFNHASKAQKNAAMKYMKFLTSKSSQLTWANETGYIPVNDNVLNSKEYLDS KMKLPSVLKDSMKHLYSVPVAKNSDSAYNGMNQIMENILIAANKHQNVNAQIKAGQQKLD SAWRQ >gi|227861798|gb|ACKR01000175.1| GENE 3 2370 - 2735 619 121 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01100 NR:ns ## KEGG: LCRIS_01100 # Name: not_defined # Def: pyridoxine 5'-phosphate oxidase V related favin-nucleotide-binding protein # Organism: L.crispatus # Pathway: not_defined # 1 121 1 121 121 216 100.0 1e-55 MKKLDTTKLTDEQIEFFNSHLPYMATVNANGVPQVGPKASLKAIDASTIQYLEKTKSTAY ANLKNGSVAAIVVADVPTHKAFRVLGHAEIHEGDDYAKKIVSGTDTPEAFVVNIKIEEID A >gi|227861798|gb|ACKR01000175.1| GENE 4 2839 - 4065 838 408 aa, chain + ## HITS:1 COG:lin2791 KEGG:ns NR:ns ## COG: lin2791 COG1409 # Protein_GI_number: 16801852 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Listeria innocua # 14 300 46 337 443 142 32.0 1e-33 MITSKKKPILWLLSDTHLIADSLHDDGLAFQHMRNTSAGKDLDYQEIALTAFVRKVIQEK PTAVIITGDVTFNGAKISGERLANIFKPLTKNKIAFLVLPGNHDIFDGWARKFKGDHEDY TPQISPAIWKEIFADSYHYALHEDPDSLAYSVNLNKQYRLILADSNIYGKQESQTHLITN GRISESQMNWIEKELIDAQQKQQQVLFFMHHNLYRHNKVIYQGYILDNALALQGLLQKYN VKAVFSGHMHAQNIIGPFANRPIAEVAGACFCMTKQEYGQLYLDEAGMQYQVHSFKMESW LTAEEKQKVPTDFSQYLKHLFFSLDEKQLNQIAQALSDKNDANVVIKFIDQLNWNFFVGE SNYSAAQKKEIVNSREYHLIAKYLPGFKRYVDSFLQVEQSSHKLKLKW >gi|227861798|gb|ACKR01000175.1| GENE 5 4100 - 4258 106 52 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKNDTVEQITPRSASKSVLPATGRQDSDLSWLGLLLSGLSLSGLWTRKKKTK >gi|227861798|gb|ACKR01000175.1| GENE 6 4403 - 6496 1688 697 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01103 NR:ns ## KEGG: LCRIS_01103 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 697 1 697 697 1152 95.0 0 MKINKKLILISTALLAVSPIAAAPLTSNVQTSVAAATKSNATGSLKVIDSHIMLYNRSGN YLDHISAPKKGSTIKYYGKPFFKTVDPGDYSAGELYYPLRKNVYISSDYVTPISGPAYLT AIFNANIYNKSGKKVGFVKKGSVVKYAGKRKTTSSKAKYYYEAQKGKYRIPYTIINGKDY YYLGSGRYIKVANIGYIDGYRLTTHAPITVTVNKNTSTITKYVNSTGWGTDPNNIELKKG QKITVDYAGQFPQQLTDFDHDHYSYYRIKGTNYWVSEDDLNLPQALENHSDLELADSTKV VLDKKILLYNVDGEKTSQELSKQFYTNTVEETAMYSNHKINEALYLWVPSEKKAELFYHT TGEANAKTNKLDNEGYILASNVKKVEGVKLTPINTAGEAESQSKVATNKSSLSTAIATAE KVQKTDRYKLADYDKKIQFLTYLQNAKTVVGETNASEVAVSQADKFLTNTTKALDGKKLL VRRTDQLTTYEVQKVMNLIYNYYQPQVTGELDVQLYNSKRNWQYPTTRPVWDVTKKSPFW FGYSSDTIRKRKVDISPLITDGITVGKKKKLQSNAYVYTAKGIKTKKLLKKGTPYKIQAI MTIKGQKNVKIDVNKYVKYGNFEASKLKVVKHYYTVQTVTPVVNAQGKKVAEIKSKNTRT KNYVQTYGTKRIKGYDYIKIGSNRYTNMLGFEYVLAK >gi|227861798|gb|ACKR01000175.1| GENE 7 6634 - 9852 2627 1072 aa, chain + ## HITS:1 COG:hsdR KEGG:ns NR:ns ## COG: hsdR COG4096 # Protein_GI_number: 16132171 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Escherichia coli K12 # 132 1063 203 1176 1188 607 38.0 1e-173 MSNFETSQKDYQEYAKLASSAESLIYSDPRSSLTVFGTFGEQLTKEIMHLDDLGDWELNQ KQRIEKMAYSKNEYPPTVLNALNLIRLRRNKATHDDHFIATKKIALEIDQSAYLVWKWFL EVYSLDKVADYVEPQDQKALIKTQEDKIKALEEKIKQLQQNRVQEVIISPEERERRRQIN VQFAKKHELTEAETRQLIDQQLRDAGWEVDSQKLNNWTQKTEPQKGHNMAIAEWVLPNGQ RADYALFKGLEFYGIVEAKKWDQDIVGQMAQPKEYSKEVPFRSDYRLVSNEMGDYKVPFI YTANGRPYLKQYQEKSGIWFWDARNHKESAYALEEFHKPEDLSLKLSAKNKEEANQDLVD DQDFPDFAHREYQIAAIQAMENAIKDGKKRILLAMATGTGKTRTAIALMYRLLKHKRARR ILYLVDRNSLGKQTANAIKDNKIGTMSISSIYGLKELSDKAPEISTKIQIATVQGMIKRL FFSEDSDDKPSVGQYDFIIVDEAHRGYAEDKELSDKEYQFYSQEDYVSQYRRVVDYFDAT AIGMTATPALQTIDIFGKPVYSYSYQQAVLDGWLVDHDAPVIIQTQLSQEGIHFKKGAEV SLFDQDEKTINKEKLPDNMNFDVKDFNKRVITRSFNEVVCDELAQRYLDPNDPNLGKTLI FAATDEHADMVVDLLKKAFKKVSNPVDDDAIEKITGSIRHPNQEIKNFKNETNPNIAVTV DLLTTGIDVPQITSIVFLRRVQSRILYEQMLGRATRLCPEINKSKFTIYDAVGIYEAMNK VTNMKPVVKNPGHNVHYFLNHKDDFFETNEDSAQYQVDMAGAVERKIKRLDDTKRDEFQH LAEINSVDQWARELSKLDKSQFLKQWPKFEQLDHIKPVKPKQIISDAVDKVINVSRGYGH GNQKPADYIENFNKFVKENVNTIPALQVVATRPKDLTFDELKNIKLKLEQNGFKENDLQS AWKNVNHVQTTADIISFIRQAAAGSELVDHDVRIHNAMQKVYGLADWTIPQKKWLKRIEN QLISSTVLGPNAEKAFDDNYFFKRHGGYKQIKKIFPENADQIIYVLNENLYV >gi|227861798|gb|ACKR01000175.1| GENE 8 9947 - 11248 1302 433 aa, chain + ## HITS:1 COG:alr3406 KEGG:ns NR:ns ## COG: alr3406 COG1106 # Protein_GI_number: 17230898 # Func_class: R General function prediction only # Function: Predicted ATPases # Organism: Nostoc sp. PCC 7120 # 1 406 1 443 463 114 28.0 3e-25 MLIEFTVKNYASFRERTTLSAETGNRLRKLKETNTFSSKNPSLLKSLLLFGPNGSGKSQL IQALQTMEGIVTRPTQAVTDKLNYYPFLFDEKSKIEDTYFEVKLELKNKIYDYSFSYNRE SITSEALTLISGNKEKEIFSRNGNDIQVSNKLLEDSIPKLRDNSLFLYLAQSENDADCIA IYKWFVNDLIFIGSGYPVNIPDELLNLMEDEYLKKEMISFLSFADFNISDIRIREVPTNP LNPQLQKIVENLNIDYPKTTKELYTVHKIYHQNEVINSGELPLTQESVGTRRLFYIVLAM MLAQMNGNEKTIVIDEFDDSLHVELAAALVRIFNSTENLNQFIITTHDIQLLDSDLRIDQ IYLLDKDFHGISDLKSIFDFEDARNKGRHDISFAKRYLQGRFGAVPVIDVDGLLDVLQMI HEKYGDEHGKNKK >gi|227861798|gb|ACKR01000175.1| GENE 9 11229 - 11810 572 193 aa, chain + ## HITS:1 COG:no KEGG:EF3241 NR:ns ## KEGG: EF3241 # Name: not_defined # Def: abortive phage resistance protein, putative # Organism: E.faecalis # Pathway: not_defined # 12 190 15 205 210 96 33.0 4e-19 MGRIRNKTKSNPIIGILCEGESEKQYFTMLKQKYRLANIKVKIVAADLSGKSLVEKAVKF GKYNHLDKTYVVFDRDEHSKDELRKCAKLARKNDITIMFSSIDFEIWILMHFESVTRSYT RKELVQKLSRSAYFNQDYSRFKGNSYREYIFDKVQDAVDHANKLYRKKSDWINDDPFTNI QIYLPEIFKRDNF >gi|227861798|gb|ACKR01000175.1| GENE 10 11825 - 13276 1152 483 aa, chain + ## HITS:1 COG:STM4525 KEGG:ns NR:ns ## COG: STM4525 COG0286 # Protein_GI_number: 16767769 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Salmonella typhimurium LT2 # 1 453 1 481 529 405 45.0 1e-113 MNNQEIVQKLWNECNILRDDGVSYQDYITELTYILFLKMSKEQGEQDDIPQKYQWDNLVS KEGLELSNFYRQLLLDLGNPEVVNSPRINSIYADASTSIHKPADLEKIIKDIDALDWWSA RDEGLGDLYEGLMEKNASEVKSGAGQYFTPRVLINMMVRMTQPKIGDRCNDPAAGTFGFM VAADRYLKDQTDDYSTLSADKEEFQVKEAFSGMELVETTHRLAMMNEYLHGMDGRLELGD SLSSNGKWMKDFDVVLTNPPFGTKKGSDDSVSRDDLTYKTSNKQLNFLQIIYNSLKHNGK ARAAVVVPDNVLFADGVGEAIRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTRGESD KDNTKETWIYDMRHQMRSFGKRNPLSDKDFAEFEKLFCVDDRSKRKETWDKEKNSNGRWR KFTIDEILKRPNTSLDISWMNDEEEHDNRSLKEILDEMNDKSKAIRDAIAELNKALEGID DED >gi|227861798|gb|ACKR01000175.1| GENE 11 13266 - 14708 840 480 aa, chain + ## HITS:1 COG:ECs5306 KEGG:ns NR:ns ## COG: ECs5306 COG0732 # Protein_GI_number: 15834560 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Escherichia coli O157:H7 # 8 474 35 550 584 224 33.0 4e-58 MKTNTLDFDAQALREKILDLAMHGKLVPQDPNDEPASVLLEKIKAEKEQLIKEKKIKKSK PLAPITDDEKPFDIPDSWEWVRLGDVGLLKNGKTPKKEDTSSDNIYPYFKVKDMNNNNLY MENVKNWVGEKYSRQVMPKNTIIFPKNGGAILTAKKRILSQDSLVDLNTGGLIPYNDLNH KFIFYLFLSLDIKDFVKGSAVPTINSKKLKETLVPLPPLEEQSRIAAKIAQLFALLRKVE SSTQQYAKLQTLLKSKVLDLAMRGKLVEQDPHDEPASVLLEKIKAEKRKMIKEKEIKKSK PLPPITDEEKPFDIPDSWEWVRLGNIAKRITDGTHNPPPNSHEGKQVISAINIKKGKIDF SLSNRFVSEDQFLKEDKRTNIRKGDVLLTIVGSLGNAAVVDTDKLFTAQRSVAVISSNIL SKFLYYVLISAMFKTQIFANAKGTTQKGIYLSKLINLKLPLPPLAEQNRIVDKIDNLFIY >gi|227861798|gb|ACKR01000175.1| GENE 12 14755 - 16095 831 446 aa, chain + ## HITS:1 COG:no KEGG:Apre_0348 NR:ns ## KEGG: Apre_0348 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 34 434 32 403 418 196 36.0 2e-48 MQLYRDKEIDIELSLPDKYNKQDKKKALSKFYRDKINPDDDNDHDFVFLEKQLHKFLKRA VLRFISKDYSNVVLLVGAGASVVTNENGNINSNYGKTMQDISWNIFNQLYGTNNLEEYLD EKDAKIFLPKDQQEKFEKVNFDDESTWFSFPLEEYISNLNLYIQDAEMSGKKVRNPSLSQ AKKLKRFILLSILDSVDYNFDSTSKMPFKHDKVILKLLNLIHSDSSKLMVATTNYDLAIE KSLEKDNFTIFDGFEFGNNKEFNDDMYEWVLSKEVNNINTKQVIYKKHVIDLLKIHGSIN WIEKENKVTKSTVEEVKSTIRDNSNHVKMIFPSSNKYAQSYEEPYFDLMSRFQNKLHQPN TLLVTSGFSFGDNHISRMIINAIKHNSSLDCLITDYNIHNFDKKTEQEDVNDNWSDLDDL RDRGYNIAFLKATMCSYNYDLSYYVG >gi|227861798|gb|ACKR01000175.1| GENE 13 16098 - 16308 137 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878605|ref|ZP_03996528.1| ## NR: gi|227878605|ref|ZP_03996528.1| hypothetical protein HMPREF0506_1529 [Lactobacillus crispatus JV-V01] # 1 70 1 70 71 120 100.0 3e-26 MSLIDNFFDSSDKNLHVDKCEYYLGKISTVSSIFANIQIENMSLLKYRFNQSDVLRPNTI NYHVLIDSNG Prediction of potential genes in microbial genomes Time: Wed May 25 06:42:38 2011 Seq name: gi|227861783|gb|ACKR01000176.1| Lactobacillus crispatus JV-V01 contig00192, whole genome shotgun sequence Length of sequence - 16212 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 6, operones - 4 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 18 - 77 2.5 1 1 Op 1 . + CDS 107 - 1540 624 ## Apre_0349 protein of unknown function DUF87 2 1 Op 2 . + CDS 1533 - 1700 91 ## gi|227878608|ref|ZP_03996530.1| hypothetical protein HMPREF0506_1531 + Prom 2187 - 2246 4.8 3 2 Tu 1 . + CDS 2347 - 3198 827 ## LBA1083 putative membrane nuclease + Term 3215 - 3279 14.5 + Prom 3238 - 3297 4.8 4 3 Op 1 . + CDS 3367 - 4383 984 ## LBA1740 hypothetical protein 5 3 Op 2 . + CDS 4395 - 4817 245 ## LBA1740 hypothetical protein + Term 4915 - 4967 6.3 + Prom 4958 - 5017 6.1 6 4 Op 1 . + CDS 5039 - 5374 285 ## LCRIS_01125 hypothetical protein 7 4 Op 2 . + CDS 5374 - 7050 2020 ## COG2759 Formyltetrahydrofolate synthetase 8 4 Op 3 15/0.000 + CDS 7057 - 7521 351 ## COG0597 Lipoprotein signal peptidase 9 4 Op 4 . + CDS 7514 - 8425 1106 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 10 4 Op 5 24/0.000 + CDS 8430 - 9485 966 ## COG0505 Carbamoylphosphate synthase small subunit 11 4 Op 6 . + CDS 9490 - 12684 2489 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) + Term 12700 - 12732 3.3 - Term 12682 - 12727 8.2 12 5 Tu 1 . - CDS 12759 - 14450 1729 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP - Prom 14470 - 14529 9.0 + Prom 14578 - 14637 8.1 13 6 Op 1 . + CDS 14733 - 15149 412 ## LCRIS_01133 L-fucose operon regulator 14 6 Op 2 . + CDS 15201 - 16097 814 ## COG1307 Uncharacterized protein conserved in bacteria + Term 16113 - 16146 4.0 Predicted protein(s) >gi|227861783|gb|ACKR01000176.1| GENE 1 107 - 1540 624 477 aa, chain + ## HITS:1 COG:no KEGG:Apre_0349 NR:ns ## KEGG: Apre_0349 # Name: not_defined # Def: protein of unknown function DUF87 # Organism: A.prevotii # Pathway: not_defined # 9 471 112 540 540 233 36.0 1e-59 MAMYDKNTFVLPGDLTVGIGDKAYICNDEAIKKYINSLEINKRDNQIEFSSFNLNEKKAI PFKISVDGLFNHHFMIVGATNSGKSTSALAILDKYQKLKGKFLIIDPTGEYKDAFSKNEV NLKTIGKNLFLNTANLTDEQWISLFRPNDNSQVIELLEAIKKLKFVQYYKKHLNKVNLTE AENRFIRNDILDCEGANQEQYKHLQIQWESDKVFNESFDINNLDKQIEKDSLKLSWNKGI KQGTYQFDYFTYGANSWLIRKVKYLIKTYNLKELFLNVDSKTQDKDFGETDKGKKILKDL NKEMLEFQGNDISLYIRLNDSKFSIGLGQVIVDYISNFLLNHDMTKHPTLLFVDEVHRYA LEKDAQDDFISPLATLAREGRKNGIFLFLTTQSPKDVPTIVLNQIGTLLMHRLTGEYEIK AINNFLNKDKLAQLSSLKSGEAILTSVNLMQPVNLNIKASGRTHYSNTPKLIKIKND >gi|227861783|gb|ACKR01000176.1| GENE 2 1533 - 1700 91 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878608|ref|ZP_03996530.1| ## NR: gi|227878608|ref|ZP_03996530.1| hypothetical protein HMPREF0506_1531 [Lactobacillus crispatus JV-V01] # 1 55 1 55 55 103 100.0 5e-21 MIDYKTLKHSENGMPTWDAFLGPMLEVASTKEEWVGRELDKLLSQRLIYLKNLLI >gi|227861783|gb|ACKR01000176.1| GENE 3 2347 - 3198 827 283 aa, chain + ## HITS:1 COG:no KEGG:LBA1083 NR:ns ## KEGG: LBA1083 # Name: not_defined # Def: putative membrane nuclease # Organism: L.acidophilus # Pathway: not_defined # 1 280 1 278 281 385 71.0 1e-105 MNKKKIITLVSSTLFLFGGYGAITNPSLSQNVIAKVKTIIKYDHSAEKKTKQIAQENKQT EKKIVSLDKKIAKLRKELKKYTGKHNIESVSAAKLASLNYSGKNIITVNNNDPSFSKSDL STNRGAWQEYGNLDGLNRVTAANALLIQSLMPSARREPLHVDPTGWHNKRVAGGWLYNRC HLIGYQLTGQNNNIKNLMTGTRQLNDPDMLRYEDQVADYVKESRSNYVRYRVTPVFRGNE LLARGVEMEGQSVNSNAVHFNIYIFNVQDGVTLNYANGTSRVG >gi|227861783|gb|ACKR01000176.1| GENE 4 3367 - 4383 984 338 aa, chain + ## HITS:1 COG:no KEGG:LBA1740 NR:ns ## KEGG: LBA1740 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 331 40 371 1376 166 39.0 1e-39 MSYSSQTVHADSVDANSSDSATTSVIKDQTTTEQVASTTKTSNNVDTNGANKTEDTTSIV KTKSTNKVDLSNTDLTTKNNSIDDNSNVGSSIESKNKIATNENKQESTTSTNKQATTVAS TSKTQANTTQNSQYNTADWDGSLDQNSHQYTLTKYKGTGNKNIYIPNTQDFINAGTITTD DKVYITKDLLETIKDAGAVNITIDSEGDKNKVYAKGDMTAALMNSDTLKSADLSHLDVSE ATAIRSMFQNDKNLENVNIAGWNMGQFSDVSQMFSGAEKLVKVDLSDTVYKNVVNAWNFF AHNNALTDVDLTNARNITREIVNGYVQAIKNQMQLPLI >gi|227861783|gb|ACKR01000176.1| GENE 5 4395 - 4817 245 140 aa, chain + ## HITS:1 COG:no KEGG:LBA1740 NR:ns ## KEGG: LBA1740 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 137 492 627 1376 82 41.0 5e-15 MNSNVTNLKLLFSSIPNVKSINLSGWDTSRVTNIYATFGHDKSLESVNISGWNLSNAKSI ASLFDGDSNLSNIDLSNVNFGNNIGDNGDSFGHVGNKLSNVNLTNAKGIPEAVLRAWGQA AKNTKATELSMSTFTVSTDS >gi|227861783|gb|ACKR01000176.1| GENE 6 5039 - 5374 285 111 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01125 NR:ns ## KEGG: LCRIS_01125 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 111 1 111 111 182 100.0 2e-45 MFLGVAGIIYYSWLLIVLFIAFILGYEGNKAISIPGIVVGIIFLLLAVYTWSFSYLQKGG DKILLKLPYRSKVKINQMTLLSSWRNFQVYQLKSDYQSYSVLMMSRKKNKQ >gi|227861783|gb|ACKR01000176.1| GENE 7 5374 - 7050 2020 558 aa, chain + ## HITS:1 COG:SPy1213 KEGG:ns NR:ns ## COG: SPy1213 COG2759 # Protein_GI_number: 15675177 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 558 1 556 556 568 53.0 1e-161 MKSDIEIAQETKELPINEIAAKVGLKEEDLEPYGHDKAKITWQAINRTRASKKLGKLVLV TSISPTPAGEGKSTITIGLGDAIHNQLHQNTMIALREPSMGPVFGLKGGATGGGKAQIIP MEDINLHFTGDMHALTAAIDTLAALVDNYIYQDNSLNLDPDRILLKRGLDVNDRALRKIT VGQGSKFNGVEHQASFAITVANELMAILCLATDINDLKSRIGDMLVGYTKDDEPVYVKQL GFQGAIAALLSNALKPNLVQTLEHTPALVHGGPFANIAHGANSVIATNLALHLSDYVLTE AGFGSDLGGQKFMDFVSRHLDKTPDAAVVVATVRALKYQALGSTDHLDEENLDALKEGFK NLERHMNNMRSYNVPVIVLINRFASDTDQELALLKQLIEEQGINAEVVTYHGEGSKGGVE AAQAVVDLANSGKADLTPTYADDDDVKDKIEKVATKIYHAAGVEYSDKAEKQIAELRKLG KAQLPVIIAKTQYSFSDNKNELGAPTDFKLHVKGISLKNGAHFIVVTTGHVLDMPGLPKH PAALDIDVDNNGKISGLF >gi|227861783|gb|ACKR01000176.1| GENE 8 7057 - 7521 351 154 aa, chain + ## HITS:1 COG:SPy0826 KEGG:ns NR:ns ## COG: SPy0826 COG0597 # Protein_GI_number: 15674864 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Streptococcus pyogenes M1 GAS # 1 143 1 144 152 118 50.0 5e-27 MKFLYLIISLVVVLADQGLKNYIVAHYAVGEVHQIIPGLLSFNYLQNNGAAWNILTGQMW LFYIISIIAISVCLYFLFNKKYKNTLFDVGLALILGGIVGNFIDRLHLKYVVDMLQLDFV HFNIFNIADSAITVGVILVFIYLIFIEGKEEQHD >gi|227861783|gb|ACKR01000176.1| GENE 9 7514 - 8425 1106 303 aa, chain + ## HITS:1 COG:SP0929 KEGG:ns NR:ns ## COG: SP0929 COG0564 # Protein_GI_number: 15900809 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Streptococcus pneumoniae TIGR4 # 7 300 1 295 295 340 59.0 2e-93 MTKEYSLEVKNEKGRLDKFVSEQIPDLSRTRVKELVKDQNILVNGKVEKVSYKIQAGDKI EVNIPAVKPLDVIPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHTKA LAQSPEGFRPGIVHRIDKDTSGLLMIAKTAKARESLEDQLAHKTNKRLYWAIVHGNFAEE NGVIDAPIGRNPYDRKKMAVVETGKKAITHFKVLEQFKDYSLIECQLETGRTHQIRVHLD YIGHPVAGDPLYGPRKTLKGHGQFLHAKVLGFKHPSTGEWLEFSVEPPQIFQETLAQLEQ TSK >gi|227861783|gb|ACKR01000176.1| GENE 10 8430 - 9485 966 351 aa, chain + ## HITS:1 COG:L43866 KEGG:ns NR:ns ## COG: L43866 COG0505 # Protein_GI_number: 15673583 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Lactococcus lactis # 2 350 3 352 357 246 39.0 4e-65 MKRYLILEDGSSFPGEGIGASIISTGELAIQTANFGYQEALTDPTNAGKILVFTSPMIGN NGINAIDYESIDPVVKGIIANDIALNISDSENFEDLSSFLKEKNIPAIFKVDTRALVHRL MEEGTIKASIMDTNDEHAFDQIKALVLPKNKSATVSTKNAYASPNVGRTVAVLDLGLKHS MLRALSLRKVNTTVLPYSASPIDIENLRPEGMIISNGPGKPEEVINQLTPVLDHFYGKYP ILGIGLGFLTLSDYLGFELVQLPQEFDGINYPVIEQNSNAIWQTAMNIDQLVLPDSVKMN MNREYFDLHSELMAGFWNSKDKLIATAFNPEGAPGTNDADEIFDYFLQMMG >gi|227861783|gb|ACKR01000176.1| GENE 11 9490 - 12684 2489 1064 aa, chain + ## HITS:1 COG:BH2536 KEGG:ns NR:ns ## COG: BH2536 COG0458 # Protein_GI_number: 15615099 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Bacillus halodurans # 1 1064 1 1058 1062 558 32.0 1e-158 MPLENDLDKVLIIGSGPTLIGSVAEMDLMATEAIDALTEEGIQVVLVNPNPATISTDKKL GVTVYLEPMTLDFLKRILRMEEPDAIMTAYGSTNGLKVAHKLLQDGVLEQMGIQLLTLNS RALQMGNQQKKTELLTKLHIDTGQSWELNQSIQDNLDNALESINDKVTFPVLVTKYNRFV HNEHLQFANPTDLISYFKEEKQNDNFTWKNYRLTEDLSSWEEVIVDVIRDKDGNLAFINF AGSIEAVGINSGDSAVVMPSLTLNNDHIQELRITVRKIMSNLDLIGFASFHFAIKHHGTQ IRSKLLTIRPRLTRSSVWAQRIGMYDVGYVVSKVAIGYRLNEITDPLSGLNASIEPTLDA VAIKMPYWSFAESGYNHYLLGSRMQASGEAMGVGRNFETAFLKGLDATINLELGWHAFIK EKEKSTADILNDLAHPDELHLVKLLAAIDQDIPYSELQKVTHLHPVYYQKLLHIVRLGKK LLQEKEQPSRDLLQEAKVYGFFNPLLAKILQKSVTEVRSLINKIDLQPSYLKIDGSAGIY KPNVCAYYSAYDVQNEAQALNAEKKILILGMLPLQVSVTSEFDYMIAHAADTLHKYGYVT VLLSNNDESISSRYKNIDRVYFDSITVENILTVAKRENISDVLVQFSGKRISALSKELEK CGLHVIGQKANDDPRDKITTLLDQQSTTLKRVPALNKTTDTDQVFAFASKYGFPLLIGGM NKENKQKSAVVYDVPAIEKYLAKNQLDQITISRFIEGHKYEVTAISDGTNVTLPGIIEHL EQTGSHASDSIAVIQPQNLTEEQQKKIEQESIKLIKQLKTKGIFNLHYLFVDNDLYLLQI KPYAGHNVAFLSKSLDKDITTCTTEALIGKNLAELGYPNGLWQNSDFIHIKMPVFSFLNY SSGNTFDSNMKSSGSVMGRDTQLAKALYKGYEASDLHIPSYGTIFISVRDEDKNRVTQLA RRFDRLGFKLIATEGTANMFAEAGITTGVVEKVHKDPRNLLDKIRQHKIVMVVNITNLSD AASEDASRIRDEALNTHIPVFSSIETAELILDVLESLALTTQPI >gi|227861783|gb|ACKR01000176.1| GENE 12 12759 - 14450 1729 563 aa, chain - ## HITS:1 COG:BS_yloA KEGG:ns NR:ns ## COG: BS_yloA COG1293 # Protein_GI_number: 16078628 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Bacillus subtilis # 1 560 3 570 572 390 39.0 1e-108 MAFDGLFIHSLLKDLVPTLVGGRLSKIYQPFDQDLVLIFRKDRKNYQFLISANAQYPRMY LTKQNIANPDKAPIFVMVLRKYLEGSVLQSIEQVGLGRIVNFHFSNRNELGDQVKLMLSV ELMGRHSNVILYNQEDNHIIDLLKRINPDENRARVLLPKAKYELPPLKPGLNGLTLSESE FKQLSSENQPNEIAQKMDGLDKDDRTELLGYLEDDYTYSSFKTFFNQFDNPRAFILKTPR NKRKIFCYLPYHLDLEKESSNPDLNAGLDEFYEYQATRDWVKQRAGQVERVVKNEQNKLT KKVKKLEKQLDLAENSEGYRIKGEILNANLAQVKPGMTKVSLPNYYENNAPLEIKLDPAL SPARNAQKYFTRYKKLRDSIKHINEQLRIAKDDIRYFDSIQTAIDNADPQDIDQITDELI NQGYLRKQKKNKRRKKIIERNLNEFKLSSGKHVLVGKNNYQNDWLTLKKANKSDYWFHVK NMPGSHVILRDDQPTDQDIKEAAEIAAYFSKAKNSAHVQVDYVQDKRVKKPNGAKPGFVI YTGQNSIEVTPEEKEIMNKKIEK >gi|227861783|gb|ACKR01000176.1| GENE 13 14733 - 15149 412 138 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01133 NR:ns ## KEGG: LCRIS_01133 # Name: not_defined # Def: L-fucose operon regulator # Organism: L.crispatus # Pathway: not_defined # 1 138 1 138 138 214 100.0 5e-55 MDVLFFSTIADQVKKEINHKCGLNISQTRILLFFDENKNQALAMGKLAEALNISLSTLSR QLQQKKTMSFINITRSEKDSSKIVNLSEAGVTKAKELKKTLTKIENLLFVYFDRDAANLF IKQLNQVADTSMTLEKME >gi|227861783|gb|ACKR01000176.1| GENE 14 15201 - 16097 814 298 aa, chain + ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 8 290 4 282 283 206 38.0 5e-53 MGRVNKLKIALVTDSTSVLTYQEVKNNDINVVPIPVIVGDKEYSEGVSITSTQLFEMERQ GAAFPKTSQPSMGQMIELCNKLHGEGYEAIIAITLSSGISGFYQNMVNMAHNNPEYNLYP YDSKMTVRLQGYLVLAAARMIKNGMEPEAILKKLDEIRKTIDEFFVVDDLKNLSRGGRLS NAGAFIGTMLQIKPLLTFNDEGKIVAFDKIRSLKRAVSKVEKLTLEKTANLPYKDKLRLF VFHSNDLKQAEQIKQFVNENFPDKPVDVAEFSPVIATHLGEKSIAIAWMVDIDKLELK Prediction of potential genes in microbial genomes Time: Wed May 25 06:43:06 2011 Seq name: gi|227861780|gb|ACKR01000177.1| Lactobacillus crispatus JV-V01 contig00193, whole genome shotgun sequence Length of sequence - 3637 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 26 - 85 6.2 1 1 Tu 1 . + CDS 215 - 2092 1493 ## COG1193 Mismatch repair ATPase (MutS family) + Term 2093 - 2145 7.6 - Term 2077 - 2140 11.3 2 2 Tu 1 . - CDS 2146 - 3213 990 ## COG0582 Integrase - Prom 3448 - 3507 9.2 Predicted protein(s) >gi|227861780|gb|ACKR01000177.1| GENE 1 215 - 2092 1493 625 aa, chain + ## HITS:1 COG:CAP0099 KEGG:ns NR:ns ## COG: CAP0099 COG1193 # Protein_GI_number: 15004802 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Clostridium acetobutylicum # 8 624 7 624 629 404 37.0 1e-112 MKNINNNQNLNFTQVKDILAQQAITIAAKEQLSSVQPSSNLHKVEQLLNETEEAVKILKL RQHIPFASSEDIEHLITKAEKGLILTPDDLEKVAEFLRVNRLLQRFLARHEQLAPLLNAY VQDMTLLPDIEDAIYTTIEHGQVRDEADRELAKMCRDLKKSVTELKTALNHFLTSKPNQK MIRDAMIVEKEGYATIPIKANYKNQLSGTIVAVSNGGQTVYFQPAKVVRLNQQITNLKAQ IRNLELAILGALTAKIYDVKDDIKRNIELITLLDMIFARGKFAQKYNCIRPKINRENSLV LRAVRHPLIINPVPLTLELTQENSVLMITGPNAGGKTVALKTTGLMILMTELGLFLPSDK PCDIPLMDDVFTLIGDHQDLDNSLSTFSAEMKDIAMITKYAQFHSLVLLDELGTGTDPNE GSALAIGILQELYLRGCLIMATTHYSSIKDFAKQHDGFITAAMDFDLKNLQPTYKLKIGS IGNSRALWIAKKSGIPENVLHQAEAILAGNNLPLSLKKRFVHQRKNKSNLVVKKEFHKGD IVYATNLKEEGIFYKYLPTQNAAKIFVTKEFVEVPLRRLQLRRLAKDLYPKGYNLDLLFV KDWQDYKFNRDLDRGSKKAYKKLKH >gi|227861780|gb|ACKR01000177.1| GENE 2 2146 - 3213 990 355 aa, chain - ## HITS:1 COG:SP1159 KEGG:ns NR:ns ## COG: SP1159 COG0582 # Protein_GI_number: 15901024 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Streptococcus pneumoniae TIGR4 # 23 349 26 356 356 263 43.0 5e-70 METAKYLELIQIEVNKLPDFVKQFNLGTNHSLTTTYQYLTEIRRFFDWLRQENISSASDN AHVTTDTLANLRRNDIMLYIDYLGHTRNKQGRLNSPTTINRSINALRSLFKFLTITADNN HGEPYFERNVMLKINSLNDTQTLNYRAHVLESHMYTGKLKFEFLTFIDQDYINHCNKQAK IGFKQNKERDMAIAALILGTGIRVSECAGVDLSDLNLKDAVLDVTRKGGQKDSVPIAEWT LPYIKRYKGIRNERYHADSKQVAFFLTQWHGQTRRITTNAIEKMINKYSAAFGHPLTPHK LRHTVASELYEVTKDQVLVAQQLGQKGTSATDLYTHVDQKKQRAALNEISKKNHD Prediction of potential genes in microbial genomes Time: Wed May 25 06:43:07 2011 Seq name: gi|227861776|gb|ACKR01000178.1| Lactobacillus crispatus JV-V01 contig00194, whole genome shotgun sequence Length of sequence - 2781 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 79 - 537 631 ## LCRIS_01138 hypothetical protein + Term 538 - 593 9.1 - Term 524 - 578 10.2 2 2 Op 1 . - CDS 582 - 1193 652 ## LCRIS_01139 diaphanous protein - Prom 1221 - 1280 6.7 - Term 1303 - 1332 1.4 3 2 Op 2 . - CDS 1343 - 2458 1012 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) - Prom 2701 - 2760 5.9 Predicted protein(s) >gi|227861776|gb|ACKR01000178.1| GENE 1 79 - 537 631 152 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01138 NR:ns ## KEGG: LCRIS_01138 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 152 1 152 152 247 99.0 1e-64 MTEEISVNFQAKNPSGIKLLNRLYDGHLVLNDIGVRLDEQLNNEDEELTVPTQADVDNLS ETFGKTVTVFSDIADAYGDVNNFAKNFGGTTKIFAQKLITELVDFNNGIADIGDSEGGLE NYDNDKLNDWINQVMSDIVETNEAFNALIDDK >gi|227861776|gb|ACKR01000178.1| GENE 2 582 - 1193 652 203 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01139 NR:ns ## KEGG: LCRIS_01139 # Name: not_defined # Def: diaphanous protein # Organism: L.crispatus # Pathway: not_defined # 1 203 1 203 203 348 100.0 6e-95 MKFKKKLALFLGLGVLLLSLTGCSDFQNWELSMRSKIGALPLTVSTYDSNGQKIDQIKAK SVNIHTDKKMSQKSSNGTEHSSVIDVDYGNNRMIHVGSTMIAYEGLKNYEDAFNKKVKID DQNRSVPLLNTMYQNFKNDWNGSSRVVMIRSQLGMPIAVFIGNHVSIHKSDMKNATQFVI DGHRLFVYRADYTVYPMSSLKSN >gi|227861776|gb|ACKR01000178.1| GENE 3 1343 - 2458 1012 371 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 37 285 157 391 444 119 35.0 1e-26 MLTNAGVTLLSQMTRFSDSESIVQASSTSVVAKALGIDVASYQSADLTAHAKAGSQFAIV KVSEGTSYRNPKAANQIKSAIANDMMPMAYHFATFSSSSSAAKREAQYAISSAKALGLPA GSYLACDYETGQGNIITNGKNVTAKAIIAFMDQIKAAGYQPLLYASSSVLQNNINTPSIV NKYPNSLWVAAYAISGRVDQPNFKYFPSMDGVAIWQFTDNWRGMNTDGNITVLPLSIAGN AAVSQAPKASNTKKTATVMYKSYVYDKNSNRTNDFYNAYSSIAYYDNKVRIKGKSMIRVG EDKYVMASNVLGNSRVFKADAKVYKNDGTINTKWSTKKSGSPIKTYGPKHYINNEAYYRI GKNAYVKADKF Prediction of potential genes in microbial genomes Time: Wed May 25 06:43:13 2011 Seq name: gi|227861773|gb|ACKR01000179.1| Lactobacillus crispatus JV-V01 contig00195, whole genome shotgun sequence Length of sequence - 1443 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 334 358 ## COG2261 Predicted membrane protein Predicted protein(s) >gi|227861773|gb|ACKR01000179.1| GENE 1 2 - 334 358 110 aa, chain + ## HITS:1 COG:SPy1265 KEGG:ns NR:ns ## COG: SPy1265 COG2261 # Protein_GI_number: 15675224 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 29 104 4 79 82 85 65.0 2e-17 IVKESALFNQKCDKIFCKKANVIKMLHWIWVLIVGGVIGLIAGALTGHGKSMNWIANILA GLVGSSLGQALLGEWGPKVADMAIVPSILGAVILVIVVAFIMNKIRPATD Prediction of potential genes in microbial genomes Time: Wed May 25 06:43:14 2011 Seq name: gi|227861770|gb|ACKR01000180.1| Lactobacillus crispatus JV-V01 contig00196, whole genome shotgun sequence Length of sequence - 1050 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 174 - 207 3.1 1 1 Tu 1 . - CDS 217 - 912 374 ## COG3619 Predicted membrane protein - Prom 940 - 999 7.5 Predicted protein(s) >gi|227861770|gb|ACKR01000180.1| GENE 1 217 - 912 374 231 aa, chain - ## HITS:1 COG:SP1104 KEGG:ns NR:ns ## COG: SP1104 COG3619 # Protein_GI_number: 15900971 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 14 225 16 227 234 134 34.0 2e-31 MSLKEVLNSNRPAESRQLACALTFCGGFIDAYTYIQRGHTLSAGQTGNVIFFSSALADHN VPGMINRASTFIAFSLGLLLVGLFHKYVKSHYWRVFCLFPILAICIVVGFLPKSVPNYYI VPAIAFGLAIQNASFSKIEGMGYNNAFTTGNLKKSVVAWSAFFFGEDKSKHTAAVNYMML TIAFAVGAIISALLQKLLVLKTIWIAVIFLTTINLVYIIALRRNKKIDFSK Prediction of potential genes in microbial genomes Time: Wed May 25 06:43:19 2011 Seq name: gi|227861754|gb|ACKR01000181.1| Lactobacillus crispatus JV-V01 contig00197, whole genome shotgun sequence Length of sequence - 16533 bp Number of predicted genes - 16, with homology - 15 Number of transcription units - 9, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 6 - 500 452 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - Prom 592 - 651 4.0 - Term 635 - 672 1.2 2 2 Op 1 . - CDS 691 - 1626 1236 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase 3 2 Op 2 . - CDS 1656 - 2630 757 ## COG0583 Transcriptional regulator - Prom 2683 - 2742 6.0 - Term 2693 - 2743 11.7 4 3 Op 1 24/0.000 - CDS 2778 - 5237 2351 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 5 3 Op 2 . - CDS 5256 - 7202 1803 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - Prom 7259 - 7318 5.2 + Prom 7222 - 7281 7.0 6 4 Tu 1 . + CDS 7301 - 7936 562 ## COG0344 Predicted membrane protein + Term 7940 - 7987 7.7 - Term 7976 - 8021 3.1 7 5 Tu 1 . - CDS 8054 - 11581 2899 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family + Prom 11721 - 11780 8.0 8 6 Tu 1 . + CDS 12006 - 12197 118 ## LBA1120 hypothetical protein + Term 12329 - 12376 8.4 9 7 Op 1 . - CDS 12123 - 12302 149 ## - Term 12317 - 12363 9.0 10 7 Op 2 . - CDS 12364 - 12588 229 ## LCRIS_01152 replication initiator A, N-terminal - Prom 12760 - 12819 7.3 11 8 Op 1 . - CDS 12834 - 13385 702 ## COG1335 Amidases related to nicotinamidase 12 8 Op 2 . - CDS 13397 - 14191 479 ## LCRIS_01154 integral membrane protein 13 8 Op 3 . - CDS 14199 - 14855 560 ## LCRIS_01155 putative protein without homology 14 8 Op 4 . - CDS 14881 - 15489 404 ## LCRIS_01156 putative protein without homology - Prom 15514 - 15573 3.6 - Term 15539 - 15581 2.4 15 8 Op 5 . - CDS 15587 - 15943 417 ## LCRIS_01157 putative protein without homology - Prom 16027 - 16086 8.0 + Prom 15994 - 16053 8.0 16 9 Tu 1 . + CDS 16073 - 16306 177 ## LCRIS_01158 putative protein without homology + Term 16315 - 16352 -0.0 Predicted protein(s) >gi|227861754|gb|ACKR01000181.1| GENE 1 6 - 500 452 164 aa, chain - ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 2 158 38 194 194 221 68.0 3e-58 MTVENFIRLAQKGYYDGTIFHRVISDFMIQGGDPEGNVTGGESIWGHPFEDELSRELFNI RGALSMANSGPNTNGSQFFIVQNKNMPKRYIKQMEPAGYPKEIIHAYKQGGTPWLDGRHT VFGQVITGMDVVDKIAKSKKDKMDKPLEDITIDSIQVQGSKFDD >gi|227861754|gb|ACKR01000181.1| GENE 2 691 - 1626 1236 311 aa, chain - ## HITS:1 COG:SP1534 KEGG:ns NR:ns ## COG: SP1534 COG1227 # Protein_GI_number: 15901378 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 311 1 311 311 341 59.0 1e-93 MEKEFVFGHQNPDTDAIGTAIAFSYLQNKLGYNTEAVALGEPNDETAYALKKFGFKAPRV IKEAAPEVKSVMLVDHNEPQQSVSDIDKVKVTHVVDHHRIMNFNTADPLYYRAEPVGCTS TIVWRMFNEFGIEIPENYAGLMLSAIISDTLLLKSPTTTDKDKKAVEALAKIAGVDYKEY GLAMLKAGTNISDKSEEELIDLDAKSFELNGHNVRVAQINVVDLPEALERKEAFLKAMDA SSKDNGYDMFMLLITNILDSDSEALVVGSDETKSLFEKAFNKQLSDSEVELPGVVSRKKQ VVPPLTDAFNA >gi|227861754|gb|ACKR01000181.1| GENE 3 1656 - 2630 757 324 aa, chain - ## HITS:1 COG:lin1846 KEGG:ns NR:ns ## COG: lin1846 COG0583 # Protein_GI_number: 16800913 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 8 225 1 212 295 89 26.0 7e-18 MSKSDTILSAKSLRYFLQLIETMNYTQAAQILGITQPALTQQVKKLERAIGAPLFGQMGK KLYLTEAGKEMEAAAIELLNTINGVISDIQEYTQSDKGNISIGILESVHVDLFYQFLRYF NKKYPEVTFTVDYFDRKELWHRLDSNMIDMAIMYMPDTTNKTGANFRHQYNHRDICPEHI VVLTHKDNVEAGGTYSVTRFGNRKWVAYPENYYLSRLMRLNFSKKIDLVTPFKIASTKEM IKIAENTDLDTYVDQTYYEAHKDEINLTPVYIKNMPEFTTACVYRRGKLDVPRMKKLLTE LQIFLDNNLDRNHNFSKLLSEEIK >gi|227861754|gb|ACKR01000181.1| GENE 4 2778 - 5237 2351 819 aa, chain - ## HITS:1 COG:SPy0910 KEGG:ns NR:ns ## COG: SPy0910 COG0188 # Protein_GI_number: 15674931 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pyogenes M1 GAS # 7 803 4 810 819 820 52.0 0 MATKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDK PFKKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMR YTESRLSKISNMLLQDIDKQTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATE IPPHNLGEVIDATIYLLKHPDASLEDLMKYVKGPDFPTGAIVMGTKGIKEAYKTGRGRIQ VRAKTTIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLS IVIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILASYLEHEEDVV TKRTKFDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYNKFTEKQA EAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRATLEKEIIKELNAVKKEFAN PRRTQISEESAKVEIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTNDDDNGLPDGDKV VYENTLSTLTNLYLFTNKGNVIYRPVHELIETKWKETGQHLSQEIGLDSDEQIIRVFVFD KLNTDCNFILATNDGYIKQLELANLQPTRTYKSRAMTAIKLKGKDSYVVGVDLIKSDNHK EITLFTHRAYAIRYDVSEIPTSGAKAVGVKSANLKDDDYIVNYVLVDSKYVDLMHVGLIT QRGAFKQFKLKLVNKVSRAKRGVLVLRELKNKPHRIVALMPYAQDHLLHVTTSSDRHVNI KTTDYPLGDRYSNGSFVIDTTVDGTPVSIELGRPISSQN >gi|227861754|gb|ACKR01000181.1| GENE 5 5256 - 7202 1803 648 aa, chain - ## HITS:1 COG:BH2140 KEGG:ns NR:ns ## COG: BH2140 COG0187 # Protein_GI_number: 15614703 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Bacillus halodurans # 7 647 9 648 655 848 66.0 0 MAKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEI DVIIHSDNSVTVRDFGRGMPTGMHKSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS SVVNALSSYMKVRVVRDGKAYEEEFKDGGHPVGTLKCVGKTKEPTGTTITFKPDETIFST TKYKYETIQERIREYAFLLKGVKFFLTDEREPEHHDVFQYDDGIKSFVKYLNEGKGTISD VFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYAKK QGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYEKM SYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRNPK KNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTIGA GVGTEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEHGKVYIALPPLYRL QKGRGKKTQVQYAWTDEELADDEKKMGRGYSLQRFKGLGEMNAEQLWATTMDPQSRMLIR VKIDDAALAERRVTTLMGDKVAARRKWIEENVKFRMGEDGSILESEDE >gi|227861754|gb|ACKR01000181.1| GENE 6 7301 - 7936 562 211 aa, chain + ## HITS:1 COG:SP0851 KEGG:ns NR:ns ## COG: SP0851 COG0344 # Protein_GI_number: 15900736 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 9 199 6 204 213 150 49.0 2e-36 MFALKFASLFILAYLIGSFPTGVLVGNIFFHKDIRKYGSGNIGTTNTFRVLGPAAGIIVF IVDFLKGTFATVLPIIFKLGPHYLCLIFGLAAILGHAFPVFLKFKGGKAVATSAGFLLGY NVHFFLICALIFFPILFITSMVSLTSLISVVLIFIASFFFHDLALSIISGLLVILIYWSH RSNIIRIEHHQENLVPFGLVYWYKKKHTNSN >gi|227861754|gb|ACKR01000181.1| GENE 7 8054 - 11581 2899 1175 aa, chain - ## HITS:1 COG:FN1160 KEGG:ns NR:ns ## COG: FN1160 COG0553 # Protein_GI_number: 19704495 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Fusobacterium nucleatum # 525 1175 456 1087 1089 450 40.0 1e-126 MSRWHRLFPERVFDRGEIYYGNDMVENIQLAQDQEHFTAQVQGGMGRSYTVTGRLRLDGR ASELDCNCPWANKGHRCKHEVAALLAVENEQENEHNVKVPFADLISEHLKQMIAHKSPVL NPLNLIGNMKFTKKSYDQALELNDHWSISSCRHFDDKMRKYEYFWEIVTEDNELITLSVQ FTRWQIISIKFDSDFSRIEKDSVRILALFYFINEYLDDDPFDLTNQAAEDLLEFYSDAST QNDEPIILRASIDKYNNIPSLTFKLGKNKHLYKVKDLNQLVDASRHSSSLKLGKFFNEPI NQAKMDIDSQHWLSFIEKIIDARNLNEEFYYNYSSQVGRITLENSVADEVNDLLYQGVKL YSNEQPIGYTTDQLDLNIKIETQKSSALVSVEDLPVSTIITGSHAYYGYYKDVWIKYIGL TPASLHNLGLQPGAEMQFSKKTVAKFAHNILPKFEQTKFILVSGTDELKAILPPEAHFLF KLDYRVGSILCVARVQYGDAQYELNQGYTEEDRRDVEKETAAWKHINTYFSDYQHGRYVL SNEDSDVVQAFLDDGINELKRLGEVQITANFRSLLKGIKINLDVGVGINLTNELLDIDLA DQKMSWEDIQAALKAYQEKRKYFVLKNGMLAKAEQPTIEQLAQTLHDLGISFKDFIHGKL HLPAYRAFYFAKQMKAANALHFSTNESFNTLINDLAKNQLKQNQIPVSLQNILRPYQKIG FNWLSTIVNYKFGGLLADEMGLGKTLQIISLLLARKEKMQNQLPSLIVAPASVIYNWQAE VKKFAPSLNVALLDGTKKERERLLLDAKKYNLLISSYQSLNRDLEAYQNLIFDVEVIDEA QNIKNQQSVTAKTVKVIKAHHKLALTGTPIENKLSELWSIFDYLMPGFLGLYPDFRKKYE LPIVKEQDKEAEDQLANMIIPFILRRLKKDVLRDLPDKDEEIVPVKMNKKQADLYNMQTQ KIIAQLNGQGDEDFKRSRFQILAQITKLREICCDPHLLYENYHGKSNKLIATIELIKNNL ANGHKILLFSQFTAMLDILHENLARLRLPLFTITGSTPKTKRQEQVQKFNQMAQPGVFLI SLKAGGTGINLTGADVVIHYDPWWNLAAEKQATDRAHRIGQKHSVKIYKMVTEDSIEERI IALQQKKAELADIILQNDQIADATMSKDDLIKILK >gi|227861754|gb|ACKR01000181.1| GENE 8 12006 - 12197 118 63 aa, chain + ## HITS:1 COG:no KEGG:LBA1120 NR:ns ## KEGG: LBA1120 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 61 75 135 189 68 52.0 5e-11 MDITAVSLLLVPNVHDKKQEIERIDHLLNQINQIGTSYLLNDVQSNAVGSAMNNAIYPAN RAG >gi|227861754|gb|ACKR01000181.1| GENE 9 12123 - 12302 149 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYPHQDKALNEHLRNFAVYDCIQYYFHFDYFDKFALASSVSRINSIVHGGTYSVTLNVI >gi|227861754|gb|ACKR01000181.1| GENE 10 12364 - 12588 229 74 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01152 NR:ns ## KEGG: LCRIS_01152 # Name: not_defined # Def: replication initiator A, N-terminal # Organism: L.crispatus # Pathway: not_defined # 1 74 1 74 74 129 98.0 4e-29 MRMIDSQTNGWVDADGNMYIIYSNQELMDDMHCNSYTVKRLKKELVNHDLLLEEDAPAEH DDRLYPLRINENEK >gi|227861754|gb|ACKR01000181.1| GENE 11 12834 - 13385 702 183 aa, chain - ## HITS:1 COG:SA1734 KEGG:ns NR:ns ## COG: SA1734 COG1335 # Protein_GI_number: 15927492 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Staphylococcus aureus N315 # 3 181 4 182 186 208 54.0 6e-54 MAKALLVIDYSKDFVADDGALTCGQPAQAIDQRITELCKQFLQNKDWVIFPMDAHLKNDP YHPETKLYPPHNIIGTAGREVYGQTGKWYLENKDNDHVLLMDKNRYSAFQNTNLDNYLRE RHIHDLTLTGVCTDICVLHTAIAAYNLDYEITIPRSAVATFTSNGDEWAMAHFKNALGAN IAD >gi|227861754|gb|ACKR01000181.1| GENE 12 13397 - 14191 479 264 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01154 NR:ns ## KEGG: LCRIS_01154 # Name: not_defined # Def: integral membrane protein # Organism: L.crispatus # Pathway: not_defined # 14 264 1 251 251 382 98.0 1e-105 MKHILYALNGTFLMLLVPALFVLALRQLSHEANQKLVNTFGFNSQIIVGGLGIIVHELSH LIMAIIFGHHINAVSLLRIPSNTNDMSLGYVKHTWSPTSTYQKVGNAFIGIAPVLGCTLL IYIIMRTLNTPISLVQNQLTTQLLSNGNALNWNFLTHSWIYIFELFQLNFDSIWHSIVAL LLVISLCFGGFDLSEADISSGKYAFLGLIGITFIMLLLVSFLGFHAALLPFLVNITVWIY LVFIISIVILAIINLIMYILNIIL >gi|227861754|gb|ACKR01000181.1| GENE 13 14199 - 14855 560 218 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01155 NR:ns ## KEGG: LCRIS_01155 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 218 1 218 218 398 99.0 1e-110 MTDFTEFESTIFSSDDNFAIRKIKHNVILTYCTQDGEKEYESLSKNTYRVFFENNLEVSR LYPPDEFSHNWLIQILMPQLSIDSLKSMAIALTTLERIAQSQEGMQLSEYVKNSELVEIK SWFDLRNKLRKISKAYSLIKQSTDQTTQWLGSDGHRYREVILANSLRLNYGQDEVVRLIP IKNNWVIQFVKTDFSATDGVIDQLFAALTLLTQYVKQI >gi|227861754|gb|ACKR01000181.1| GENE 14 14881 - 15489 404 202 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01156 NR:ns ## KEGG: LCRIS_01156 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 202 1 202 202 382 99.0 1e-105 MHFDIFNRKTVSTDKMFFQTTLNPKQAIIIGNGAKFRRWVFFSTNFATFYVIILSAISIL LIKSNVSVLICLLLALANLVINRSIPRYWQTFFGPNAEYGKNHRPAILPILYIITLFGWL WSVSHFVGSLTFITGTFVLVGLAGSLLSLWIWMNLNTVSCAPISELQWRNNAKRRGMSDE DIDKVIASLKKRRAIYFSKHDK >gi|227861754|gb|ACKR01000181.1| GENE 15 15587 - 15943 417 118 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01157 NR:ns ## KEGG: LCRIS_01157 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 118 1 118 118 221 100.0 4e-57 MSVDIYNEKLEPYDDGKRHKFSGTFDRLNDRLAIFKDLRIAGAGGNPIVKQLALHYLKTF KDLDLKRGDVVEFEGMVEKDSNNGFTIERPTQAEKIRSAAADDAKVDVVGDDWNWFEN >gi|227861754|gb|ACKR01000181.1| GENE 16 16073 - 16306 177 77 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01158 NR:ns ## KEGG: LCRIS_01158 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 77 1 77 77 117 98.0 2e-25 MSIYYQFGIIIGLVLLAFAIHIAMKQHKTTFPFNIVNLGIAFIISTLAIYIIVACLGAIQ PQNWYTNNALWKFLIAS Prediction of potential genes in microbial genomes Time: Wed May 25 06:43:41 2011 Seq name: gi|227861752|gb|ACKR01000182.1| Lactobacillus crispatus JV-V01 contig00198, whole genome shotgun sequence Length of sequence - 928 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 98 - 157 3.7 1 1 Tu 1 . + CDS 190 - 813 255 ## PROTEIN SUPPORTED gi|165937309|ref|ZP_02225873.1| non-canonical purine NTP pyrophosphatase RdgB Predicted protein(s) >gi|227861752|gb|ACKR01000182.1| GENE 1 190 - 813 255 207 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|165937309|ref|ZP_02225873.1| non-canonical purine NTP pyrophosphatase RdgB [Yersinia pestis biovar Orientalis str. IP275] # 1 194 27 222 223 102 32 8e-23 MDSLLFTTYDQNKINELQDKLNQLSLPIKVVGLAEVDYAPQKSYSEATFLSNARATAHRL AEFTNLPTLSESSGLSVDYLLNSLGILPYHHNGQDDKAKLLGYLGGVSSEKRTASYYTTF VFTWPGQESNDIVSAGRISGLIAKYPHGSSNYGYDALFVVPELGKTFAEMNLNERNSISH RNNTLNKLLCDLPDWWDAQKSAQAINN Prediction of potential genes in microbial genomes Time: Wed May 25 06:43:52 2011 Seq name: gi|227861716|gb|ACKR01000183.1| Lactobacillus crispatus JV-V01 contig00199, whole genome shotgun sequence Length of sequence - 37463 bp Number of predicted genes - 35, with homology - 35 Number of transcription units - 10, operones - 10 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 26 - 463 539 ## LCRIS_01160 hypothetical protein 2 1 Op 2 . - CDS 513 - 1745 1023 ## COG1409 Predicted phosphohydrolases 3 1 Op 3 . - CDS 1749 - 2873 1091 ## COG0116 Predicted N6-adenine-specific DNA methylase - Prom 2903 - 2962 3.7 4 2 Op 1 . - CDS 3334 - 3744 450 ## LCRIS_01163 cell division initiation protein - Prom 3768 - 3827 6.2 5 2 Op 2 . - CDS 3838 - 4407 523 ## COG4474 Uncharacterized protein conserved in bacteria - Prom 4449 - 4508 5.0 + Prom 4385 - 4444 3.4 6 3 Op 1 7/0.000 + CDS 4477 - 5106 557 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase 7 3 Op 2 . + CDS 5109 - 7421 1842 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Term 7446 - 7478 0.1 - Term 7546 - 7574 -0.1 8 4 Op 1 6/0.000 - CDS 7576 - 8205 818 ## COG0177 Predicted EndoIII-related endonuclease 9 4 Op 2 4/0.000 - CDS 8208 - 8852 438 ## COG3935 Putative primosome component and related proteins - Term 8865 - 8899 3.0 10 4 Op 3 . - CDS 8931 - 10229 1399 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases 11 4 Op 4 . - CDS 10283 - 10780 523 ## LCRIS_01170 hypothetical protein 12 4 Op 5 . - CDS 10783 - 13563 2583 ## COG1199 Rad3-related DNA helicases 13 4 Op 6 8/0.000 - CDS 13579 - 17187 2793 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 14 4 Op 7 . - CDS 17190 - 20669 2357 ## COG3857 ATP-dependent nuclease, subunit B - Prom 20690 - 20749 8.5 + Prom 20649 - 20708 7.2 15 5 Op 1 5/0.000 + CDS 20748 - 21656 902 ## COG1577 Mevalonate kinase 16 5 Op 2 5/0.000 + CDS 21656 - 22618 745 ## COG3407 Mevalonate pyrophosphate decarboxylase 17 5 Op 3 3/0.200 + CDS 22661 - 23743 830 ## COG1577 Mevalonate kinase 18 5 Op 4 . + CDS 23755 - 24771 878 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases + Term 24773 - 24820 12.5 - Term 24761 - 24808 12.5 19 6 Op 1 . - CDS 24824 - 25615 959 ## COG0561 Predicted hydrolases of the HAD superfamily 20 6 Op 2 . - CDS 25612 - 26448 625 ## COG0144 tRNA and rRNA cytosine-C5-methylases 21 6 Op 3 . - CDS 26486 - 26974 390 ## COG0144 tRNA and rRNA cytosine-C5-methylases 22 6 Op 4 . - CDS 26955 - 27854 682 ## LCRIS_01182 hypothetical protein 23 6 Op 5 . - CDS 27907 - 28659 564 ## LCRIS_01183 SAM-dependent methyltransferase - Prom 28795 - 28854 5.8 + Prom 28610 - 28669 5.1 24 7 Op 1 . + CDS 28742 - 29305 592 ## COG0681 Signal peptidase I 25 7 Op 2 . + CDS 29377 - 29565 331 ## LCRIS_01185 hypothetical protein + Term 29571 - 29631 15.3 - Term 29568 - 29609 8.2 26 8 Op 1 . - CDS 29624 - 30412 372 ## LCRIS_01186 hypothetical protein 27 8 Op 2 . - CDS 30463 - 31272 837 ## LCRIS_01187 hypothetical protein 28 8 Op 3 . - CDS 31282 - 32112 623 ## LCRIS_01188 hypothetical protein 29 8 Op 4 8/0.000 - CDS 32112 - 32834 204 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 30 8 Op 5 . - CDS 32812 - 33186 396 ## COG1725 Predicted transcriptional regulators - Prom 33342 - 33401 14.2 - Term 33310 - 33362 5.3 31 9 Op 1 . - CDS 33493 - 34734 1585 ## COG2195 Di- and tripeptidases 32 9 Op 2 9/0.000 - CDS 34753 - 35550 858 ## COG0327 Uncharacterized conserved protein 33 9 Op 3 . - CDS 35547 - 36230 761 ## COG2384 Predicted SAM-dependent methyltransferase + Prom 36251 - 36310 5.3 34 10 Op 1 . + CDS 36331 - 36771 400 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 35 10 Op 2 . + CDS 36771 - 37445 599 ## LCRIS_01195 enterolysin A Predicted protein(s) >gi|227861716|gb|ACKR01000183.1| GENE 1 26 - 463 539 145 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01160 NR:ns ## KEGG: LCRIS_01160 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 145 1 145 145 278 100.0 3e-74 MLKDETKFDQLGQKLFMKGVLQDFEKKNGPIKGRMMVTEGKIPPEMLTKLQSELMNSSNW IVVEGSFDFYNYTVGMIVDLTTGKPLANGWLVPQLGHPGMQPAEKWQEFLIEKVVDAIDE KGKINLPLYVWISDRSDLTKTDQDL >gi|227861716|gb|ACKR01000183.1| GENE 2 513 - 1745 1023 410 aa, chain - ## HITS:1 COG:lin2791 KEGG:ns NR:ns ## COG: lin2791 COG1409 # Protein_GI_number: 16801852 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Listeria innocua # 2 360 34 402 443 159 29.0 7e-39 MITKELNTEFWVISDTHLIADSLHDEGQAFSRMQKTSQGKDLYYQEIALSAFMRMAQRKK PAAIIVTGDVTFNGERVSAEKFAQIFKPLKETKVLVLPGNHDIFDGWAREFRGKKQFYAG EISPMFWRSIFDKSYREALDEDDNSLAYSVQLNPQYLLVLADSNIYGKEETTEAPHTHGE IGKVQLKWIEKQFRYAQEHQLRPVLFMHHNLYAHNPAVNKGYVVDDAVELRRLCARYNVK LAFSGHIHAQNIMGPQDMTPTTEIVTSSFCSNDQGYGVVRVHSRHITYVRRNFDMTRYLT DKEKENYTLVHYHKYLKDLQLGSISADMMQSELNQYHEDIELVRAMGNLFGWMNYHFFNG HNHIKASELNKIHASKEYQVLIKHHPEYRLYLKTLYDTSDHSNLQVKIRY >gi|227861716|gb|ACKR01000183.1| GENE 3 1749 - 2873 1091 374 aa, chain - ## HITS:1 COG:SP0373 KEGG:ns NR:ns ## COG: SP0373 COG0116 # Protein_GI_number: 15900296 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Streptococcus pneumoniae TIGR4 # 2 373 3 378 385 374 49.0 1e-103 MKEYQLYATMGAGFESVVNKELQSMGYKTRVENGRVFFKGGQEDIVRTNLWLRTADRIKI LLKEFRATDFDTLFNEIYDFDWAELLPVDAKFPVQGRAVKSKLHSEPDVQSIVKKAIVNK MVDQYHRRGFLPETGNEYPLDIHIYKNVARISLDTTGASLFKRGYRVEHGGAPMKENFAA GLLKLTPYNGTHPLIDPMTGSGTLAIEAALIAKNIAPGTWRKFAFDGFDWFNPKLHNEVL AKAKSEVKPLEAPIWASDIDQSVLEVAKLNAHNAGVLQDIRFKQIAVKDFTTDLENGIII ANPPYGKRLKDRESAEELYRQMGEVLRPLSSFSQYYLTADPNFEKCFGAKATKKRKLFNG NLRVDFYQYWANRR >gi|227861716|gb|ACKR01000183.1| GENE 4 3334 - 3744 450 136 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01163 NR:ns ## KEGG: LCRIS_01163 # Name: not_defined # Def: cell division initiation protein # Organism: L.crispatus # Pathway: not_defined # 1 136 1 136 136 229 100.0 3e-59 MANLNDIKLSGQDILKKQFKSKVKGYDPDEVDAYLDEVISDYTTFQQIIEDLYGQIGTLQ RQLMDEKQKAKKTVEAEEEKVKTYMPTHRRSAPVKFAEDADDTQGEISTNMAIIQRISTL ERKVYNLEQHVYGLKH >gi|227861716|gb|ACKR01000183.1| GENE 5 3838 - 4407 523 189 aa, chain - ## HITS:1 COG:lin2003 KEGG:ns NR:ns ## COG: lin2003 COG4474 # Protein_GI_number: 16801069 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 180 1 179 181 125 35.0 4e-29 MQRLWVTGYRSYELNVFGDRDPKITVIKYALKNYLTSLLDDGQLDWIITGANLGVEQWTA EVGLELGEKYPVRTSIMIPYEEFANRWNDSNKAKFLNLKEKVDFFASTSNTPYQSPLQLR NYQNFMIQHTDRALMIYDSEHPGKPKYDYNLIQKYQETKEYPLDLIDFYDLQDAAEEYQE NHQINHFSE >gi|227861716|gb|ACKR01000183.1| GENE 6 4477 - 5106 557 209 aa, chain + ## HITS:1 COG:BH1703 KEGG:ns NR:ns ## COG: BH1703 COG3331 # Protein_GI_number: 15614266 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Bacillus halodurans # 27 202 18 195 199 191 55.0 6e-49 MVKYPSGSLAAFRKPVTKKDEHPVHRSYHHKKGVNFSDRGMTLEQQINESNKYYLMEEIA VVHKKPTPIQIVKVDYPKRSKAVIREAYFRQASTTDYNGVYKGYYLDFEAKETRNKTNFP LKNFHEHQIFHLDECLKQQGICFTIIRFASLERYFVTPASFVIRAWRKKDKSSMTLKEIE NNSFEIKSGFRPTLPYLKAVDKFIADRKK >gi|227861716|gb|ACKR01000183.1| GENE 7 5109 - 7421 1842 770 aa, chain + ## HITS:1 COG:SP0369 KEGG:ns NR:ns ## COG: SP0369 COG0744 # Protein_GI_number: 15900292 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 28 651 7 642 719 469 43.0 1e-131 MADNNNNMKRESRRDYHGRRPSSGHLWIRIIKWIFLLIFLIVISGIGLFAFYAKDAPNIS QDQLQSGKSSSLYTNNGKFLLSLGSEKRIYVKNKDIPQQLKDAVVSVEDKRFYKDKLGVD PIRIIGSMLTNAKSNSIAAGGSTITQQLVKLTVFSTAASQRTLKRKAQEAWLAMKVQHEF SKDQILEFYINKVFMNYGNYGMGTASNYYYGKPLSKLDLAQTALIAGMPNAPVAYDPYLY PQKAKYRRDIVLKTMLQNDKITKAEYNQAVAEPISKGLKSHRNNNESKIRKIDDPYIKEV ISEVKSKGFDPYHDNLKITINIDQKAQNKLYELANNGSVPFTNNKMQIGATVVDPNNGHV VAILGGRHLPSVQLGLDRAVQTGRSTGSSIKPVLDYAPAIQYLNWSTAKMIDDSKYVYPG TNIQLYDWDNKYDGMMTMRHALEQSRNVPAVKTLAEVGVKRASAFARRMGVNVSSKSGLS VAIGANASSLQMTGAYSAFATMGVYHKPQFVSKIETPDGLTRNYDSNGVRVMKKSTAYMI TDMLKGVIKRGSGTNAKIADLYQAGKTGTVKYSDEDLAKYPSYNSTPKDSWFVGYTRSYV MGVWTGYDNLKDGTISGIGQQSAQLMYKSMMTYLMNNKPNLDWKQPSSVVRAKIVNNSNP PELATSGGTWQLFVRGHAPAGIGNSAASYDEDDEETDTSSDNTGTTPSSSRTAVTQSSSS RENGSSSQSNSSQRASSSQRKTQSSSTQQSSSTRKPEEESHERNDDSDND >gi|227861716|gb|ACKR01000183.1| GENE 8 7576 - 8205 818 209 aa, chain - ## HITS:1 COG:SP1279 KEGG:ns NR:ns ## COG: SP1279 COG0177 # Protein_GI_number: 15901139 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Streptococcus pneumoniae TIGR4 # 5 205 2 203 209 192 50.0 3e-49 MTEDLLSDEEARKVLKKILALYPDAQGELQWDTNFHLLCAVMLSAQTTDKMVNRVMPSFS KMFPTPEVLAKAPIEEIEHEIKTIGLFRSKAKHLKATAQILVDKYNGQVPKDKKLLMTLP GVGEKTANVVLAEGYGVPAIAVDTHVSRISKKFHIVDDKATPHEVEKRLEAILPKSEWIK THHAMILFGRYTMPARAKGDPYSYLNSEK >gi|227861716|gb|ACKR01000183.1| GENE 9 8208 - 8852 438 214 aa, chain - ## HITS:1 COG:BH1697 KEGG:ns NR:ns ## COG: BH1697 COG3935 # Protein_GI_number: 15614260 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Bacillus halodurans # 18 214 21 207 233 111 29.0 1e-24 MEFNDYRALGFTTLQNGLIAYYPQLGISDAELILIIQLEAFSQRGESFPSNEKIAANTNL SVSDVGNLIQRLIERNYLTIEQMTDSQDKIGNKYSLNKLYNALDHYIDQNVLIKDKKKDK TVSVANNLENNPLNYLSRKVEVEFGRYLSPIEREEIAQWLSVDHYAPELIELALREAVLS QAYSLKYIDRVLLNWQRHSLKTTDEVERFLKRNR >gi|227861716|gb|ACKR01000183.1| GENE 10 8931 - 10229 1399 432 aa, chain - ## HITS:1 COG:SA1287 KEGG:ns NR:ns ## COG: SA1287 COG0017 # Protein_GI_number: 15927035 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Staphylococcus aureus N315 # 6 432 4 430 430 535 59.0 1e-152 MTELISIKDSSKHVDEEVKMHVWLTDKRSSGKIIFLQLRDGTAFFQGVVRKNDVSEEVFD TAKSLRQEASFYITGTVHEDARSHFGYEIQITDLKVVSNNEGYPIGNKEHGVDFLLDHRH LWLRSKKPFAIMQIRNTMFKATVDFFEKEGFIKFDAPIFMHSAPEGTTQLFHVEYFDHDA YLSQSGQLYGEAGAMAYGKIFTFGPTFRAEESKGRRHMTEFWMMEPEMAWMHQDESLDIQ ERYLAYMVKQVLENNEYELKILGRDPEKLRPTTEGNFVRLPYDDAIKMLQDAGRDIKWGD DFGAPDEGYISEQYDRPVFIVNYPTSIKPFYMKKNPDNPKEYLCADVIAPEGYGEIFGGS EREGNYEILKQQILDAGLNLEDYQWYLDLRKFGGVPHSGFGMGFERTIAWVCHLDHIREA IPFPRLINRMQP >gi|227861716|gb|ACKR01000183.1| GENE 11 10283 - 10780 523 165 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01170 NR:ns ## KEGG: LCRIS_01170 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 165 1 165 165 298 98.0 5e-80 MLQDDTRQTIKFVSWVIGLIIVAFLASIAIFYYAGSRSRGNDQKVTQLATSKTPIRKIQN YYHLDRGTSSYAIAGTNNKGKQYYFIYLPNSKTAYLYPAAKGITESKIKNKFKSIHTDAT INNINLGWYKGEAVWKVAYKKQNGNLGYTLYEFKNGNDISEVDNL >gi|227861716|gb|ACKR01000183.1| GENE 12 10783 - 13563 2583 926 aa, chain - ## HITS:1 COG:BH1691_2 KEGG:ns NR:ns ## COG: BH1691_2 COG1199 # Protein_GI_number: 15614254 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Bacillus halodurans # 259 919 38 708 716 223 28.0 2e-57 MAKSFTKDTFAVVDLETTGTQRENGHHIIQFGCAIIKNLKVVKTYSFLINPHREIPQSVV NLTGIHDQDVAKQRDFDYYAPKITKILQNTVFVAHNVDFDLPFLNYELVQHGYEALTNKA IDTVELAKIAFPTFPSYKLSDLTTQLGIKHLDPHKADSDAYGTAVLLLEIFNKLESLPQA TLNTLSSLSHGLIRDTSWVITTIADNLRQEKRPLGKEYMQVRNIILQKQNDNSEAHGGNA KFPKTDSEKQKLFKGHLHFRRAQVDLINHLHQFINDPDKRAMLIEAPNGTGKTFSYLFAY AYQLYSGRKLVVATPTKVLQEQVIEHEIPQLFKVTKLDLTAEVVKSSSRYLDLDGFVQTI FQGTPNKQTLILQMQILVWLTKTKTGDLDELNLTNYNAPLFAQIQHPGDARVGSRFAGVD FWNLARKRQEEADILLTNHAYLANHYMDTIWGQNPYLVIDEAHRFTDNVVSSRNDSLRFE ALWGVLSHLRNLLYFSDESVEAQFNDDVQLNLLLKKIDPKILELIQLINELQKQLYFQRD NAVNRTVLANGNLELSFQGKSLFGGNSKFKAILPKFQQKLEEVRDLTNQVLFELYNEQER MLANVEVLVNEITEQIDRLDYYSEKGYQLADLLSDQKGLEQDGFILMITNPDDPLSTNLD WLMLDAGEVLKQIYSRFDHIAFVSATLTSNRNFEYAINQLALTELHPIEYIGKSTFNIKK HLQVLAVNNMPSPDSEEFEKTIAQILLSDIQDKHHVLVLMTNLEKIKTVFTMIMNEPQLK DFEILAQGLSGSNNRIAKRFVIAKKSIIIGADSFWEGIDFHDCGIDTVFAAKIPFESPDQ PEVRLRQKKLEDQGIDSFTKDSLPRAVIRFRQGMGRLIRGEQDHGQFVILDPRLWTKDYG QEFLQTIPVKVEKVTREELKKKLENK >gi|227861716|gb|ACKR01000183.1| GENE 13 13579 - 17187 2793 1202 aa, chain - ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 2 1195 9 1226 1232 572 31.0 1e-162 MSQFTKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLREILSGTQVDELLVITFTKAAA EEMKTRIKQALSAELAKPGSNRRYLREQLNQVDTANISTIDAFCLEVIHRFYYSVNLDPS FSILTDDTQAALLKERALREIEGEFLEKKDVNFRHFYDNFAGDRDADSPRDLLLDLYDFA MAKPEYRSWLKKLVDVYVVNGSIVESDLWQKQIKPYLLTSIGDLQGKINDYLENPVIETK ELAKAKEAFTLFAQNLDHFVFALENDADYDKQRKLLRSCVFTANYRKSSKWDEDVLNFYE DLQKLKDEAKNLVFDTFTSFFAVDEQEQIKVMQRGQKIVAAIAKSELALIDRFNKLKRSE NLLDYSDMEQLAYQILSQDTSNSQMAREFYQNKFKEILIDEYQDINALQENIIQQIKNKD KNTLFMVGDVKQSIYGFRQAEPSLFLKKYHDFANDDNKQTKRILLSDNFRSTEPVTKIVN QVFKSVLSSDFGGIDYQKEGQLIFGAKYYPENTPKASEVIVHEKKNSSNEDENEIDFSEI QMVLARIKQLKEERVQIFDSKTGMRELRYSDIAILTRSRSDNLEIMQEFAKQDIPLFVTD AKNYFQTFELTVMMNYLKIIDNPDQDIPLVSVLRSPLFNFGEKDLAKIRIKSKNSTFYSA LTSYVGVGDELSTRIKDFLNQLADLRKFATAHRISELIWSIYARTNLLEIMTALPNGEQR RVNLEALYERAASYESAGFKGLYQFINFINRMRQSQKDLAQPLLTKEAGNAVRLMTIHGS KGLEFPIVFYVGMQHKYQMRDLKGNYVISSDSIGITLREEHYRIDSLVKAMGNVTKKRQL LEEEARILYVALTRAKQKLILVGDVPNLDKRVKEWSTELNQIGQLSLADKLSSTSPLSFM GPALALDRHLAVKMSDITNSLDKSQSFLYINYENANGELPDYQKAETSNDKTQSNLLNQT TKRLYQFNYPFKDASETTAYQAVSEIKKAFNDPIETELENAHLLTSTNRYLQPIDTKPNF LYQTKFTGAEIGTATHMILQYYDYQGNGAEDQLEVEIQELIKQKKLNPEIVSSLKKDQIE WFVHSNFAEEFWQKPENLKREIDFSSLISAKTLFKNFSDPNAKILVHGTIDGYFVKNDGI ILFDYKTDHVDQSHLSESIELIKEKYTGQLRLYEQAINEFSQKKVIGKYLILLDAKQAVE VK >gi|227861716|gb|ACKR01000183.1| GENE 14 17190 - 20669 2357 1159 aa, chain - ## HITS:1 COG:lin2369 KEGG:ns NR:ns ## COG: lin2369 COG3857 # Protein_GI_number: 16801432 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Listeria innocua # 2 1158 3 1157 1157 298 24.0 5e-80 MIKILTGRQTDPLQEKILEEAVENYQQHPEQETFIIVPNHIKFTTEVRAINKLATSKQQT ETAVKNLHVLSFSRLAWFFLKDAEQGLPNQLDDAASAMLLAHIIENKKDELTIFENVNVN SGLVNQLYQTILQVYDGNLDLDEISEDNLDQETKNKLHDLRIIYDAFIKEIAGKFSTKNE VQLQLNEILAKSKNLKQASFYFCDFSHFSLQETLTIKILMRKAKDVILAFKTRLGEINSS AEEGDYDYVIQQTIKRLTLFLQERKMDYVTATFPLNSQSNGREILNSLWTETIPKVDELK QVQLVKADSRYAEAYFVARTIYQQVALSNYRYHDFLILAPNLKEYETYLTPILRQNQIPF FNDLQQEMKYHPLVVLIESLFNLHENPFQTQNMLAILKTHLLIPSWYKEEAEYIHDVDEL ENFVLAHGINHNLWKKHFDNFVNAEVIRLDKMDDEVAKIDRLRSYLVDKISTFFKIIEQE KDSQKALTIFFEFLTKNGIADRLEKWRDEANEAGDLQQAQQPEQLWDLLMQLLQDYLAIN PETFDLNEFFNMLISAFREANFSQIPSTLDAVNLSEMGMVQTSGYKQVFIIGATANNLPQ IQKMPGFLTTENLNQLQNSFNSESYLEDSQQLNNLDQNYQFGLSLALAQDRVYVSYPVLN ASNEELDPSIYYQRLKDYGAQQFVQHDLPEKMQDLLSFITNPDASLGYLTYMNSINSGLA VQELLKITQEQLPQKTKTVLEASDFDNQPENIGQDLASQLYGQNLNSSVSQLETFYENSY EYFLNYGLKLRRRFENEFDVIQAGNYFHETFDRLVKKLNKQHTDLADLSSIELEQMLNSV RNVMKDEGKYSQLMNDPFNQYLFKCLDHTTSKVAHNWRRSLKETPLRAKYSELSFGLGEK IKGLSLKVPDISGQHKVDLRGKMDRVDLANFNDKDQVLAQVIDYKSSAKKFDLGMFYNGI ALQMVSYLDVLTKNDQFFAGKDRLSLLGAFYQTVTRQLERLNSNKLIDSSLNLKKGATDS KPKLMYTGLISNDPEILVEAEPLLDDHPSYSSELYTGVKTKARGGFSLPRDRNFSEEEIE LLLEYDEYLIRQASSQILSGKIELNPYRYGKAKNALTYSDYRDVFFFDAMLRQNQYHEIN NLNKKELILKIKEKLGKEQ >gi|227861716|gb|ACKR01000183.1| GENE 15 20748 - 21656 902 302 aa, chain + ## HITS:1 COG:L7866 KEGG:ns NR:ns ## COG: L7866 COG1577 # Protein_GI_number: 15672386 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Lactococcus lactis # 6 299 10 307 310 163 32.0 5e-40 MKSSYLAHGKVIIIGEHSVVYGYDALAMPIKALHIKTTVESASQMWMDTARYHGPLFEAP AEYDGLKYVVKHMKKKAGNNHPLKITYTGEIPMERGFGSSATVALGTTRAMNQFFQLNMT EKEIMTVTNHAEMINHGKASGLDAATVNSDYLVFFNKKMGPKILQTKLGATLLIMDTGQL GNTKEAVFLVKKMLEKSDYAKKKIARLGELADLTKKAWIKHDRQAVGQIFNEAQEILHSF DLSTNKIDQLQKIALSNNALGFKLSGGGLGGITISLCDNETVAQEIASKCKDLISDYWIE EI >gi|227861716|gb|ACKR01000183.1| GENE 16 21656 - 22618 745 320 aa, chain + ## HITS:1 COG:SA0548 KEGG:ns NR:ns ## COG: SA0548 COG3407 # Protein_GI_number: 15926269 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Staphylococcus aureus N315 # 5 310 7 316 327 233 44.0 3e-61 MNRTARAHTNIALIKYWGKADDKLRLPLMSSLSMTLDAFYTDTSVEKTDGENQFFLNNQQ QTAAASQRVFAYLKKLQARFHVTGNLIVKSVNHVPTSAGLASSSSAFAALAAAFCQCYDI NIDLEDLSRLARIGSGSASRSVYGGFAVWQKGNSDETSYAYALDETPTMDLHLLAVELNT KQKKISSTYGMKDAQSSPFFRPWLERNNSELNEMIKAIKSNDFTALGQLAELNANEMHAI NLTAQPEFTYFEPQTIQAIKLVEQLRTEGIECYYTIDAGPNIKVLCQLRNSKDIIQRFSS EFNNVNIVNASFGPGITYLD >gi|227861716|gb|ACKR01000183.1| GENE 17 22661 - 23743 830 360 aa, chain + ## HITS:1 COG:SA0549 KEGG:ns NR:ns ## COG: SA0549 COG1577 # Protein_GI_number: 15926270 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 1 355 1 356 358 294 41.0 1e-79 MITEKAPGKLYIAGEYAVLEQDCPAILVAVNQFVRVSITKSKGATGLIHSKQYSQDSIHW VRQGSKMVIDNRDNPFEYILSAISFTEQYCIEQNIKMKVYDLHVNSDLDSADGKKYGLGS SAAVTVATVKAILRFYGVKMSNELVYKLSAISHYSVQGNGSAGDIAASVYGGWLAYQTFD KKWLKQELANKTLVQVVNEAWPGLKVELLTPPKDMKLMIGWSQKPASTSRLVDETNANKA ALNMEYKNFLAASRACVLKMVQGFEANNIALIKQQIRANRKLLQHFAKINQIAIEIPRLS QLIKIAENFGGAAKTSGAGNGDCGIVITDANTDVEALESEWRHNGIMPLNFKVHQIIMAH >gi|227861716|gb|ACKR01000183.1| GENE 18 23755 - 24771 878 338 aa, chain + ## HITS:1 COG:SA2136 KEGG:ns NR:ns ## COG: SA2136 COG1304 # Protein_GI_number: 15927926 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Staphylococcus aureus N315 # 4 336 6 341 349 221 35.0 1e-57 MSIRSERKEEHLKLAQMFFNKEKYNSFDQLHLLRPALPETKVDPTILGSEMFGKNVSAPF FINAMTGGSAASKQINQALGQVAQQQNIALALGSASILAKETDQLDSFMVARAEDPDGVL IVNVNPETPISAIKQIIQELNADALQIHLNTIQEIAMPEGDRDFRWLDSIKAIRTAIDLP IIIKEVGFGLDQTSIHLLKVNGIEYFDVAGSGGTNFAQIENARNASDVSYLEDLGLPTVV TALMAWQEQVKFYVSGGVRNPLDILKGLALGGKFVGISNVFLQEYIQNGSTGLEQLITNW KNELAALIAVYGKKDLASLVQIKKYYNLPLKAQIDQLL >gi|227861716|gb|ACKR01000183.1| GENE 19 24824 - 25615 959 263 aa, chain - ## HITS:1 COG:STM0867 KEGG:ns NR:ns ## COG: STM0867 COG0561 # Protein_GI_number: 16764229 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Salmonella typhimurium LT2 # 2 260 3 263 271 162 37.0 8e-40 MIKLIATDMDGTWLTDQKDYDKELFLREFAEMQKQGIKFVVASGNQYANLMTRFPEVLDK IYFVAENGALVAQGRQILHVDSLSDDIYQTLLKITTEYPYPAVVMGLVSAYVKKSSGRAY KQEMKKYMEHITVVDSFGEIDDQIFKVSLTVPEDKMSKILRELKEKYPEVGFVSGAADSI DMQTKGMNKAVGLAYLSQKLGIKSSEMIAFGDSGNDVGMLKYVGRSFATATALPEAKQAA GQIIGSSNESAVQKEIAKLLEIK >gi|227861716|gb|ACKR01000183.1| GENE 20 25612 - 26448 625 278 aa, chain - ## HITS:1 COG:SP1402_1 KEGG:ns NR:ns ## COG: SP1402_1 COG0144 # Protein_GI_number: 15901256 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pneumoniae TIGR4 # 1 114 176 280 280 110 50.0 2e-24 MFRKNPEAIDYWSQDYVLTCQNRQKEILNEAVKMLQPGGRLIYSTCTFAPEEDEQIVSWL NKEYGFTILDTGIQTNKIDVGQPEWADGNPDLTKTLRFWPQDGIGEGQFVAVLQKVGKAR IEKKSKNKKAKRDPWRLTKNDQELVGQVMDQFNLPVALSDWRNKAKVRNEHVYIPAISLP EKSKLHVINNGVELGILKKKRFEPGHQLAEVLGKVKQERVYDLPTIEEYQNYLHGETVKV DSDLRGFVLVSYQKLIFSFGKIAGNQVLKNFYPKGLRK >gi|227861716|gb|ACKR01000183.1| GENE 21 26486 - 26974 390 162 aa, chain - ## HITS:1 COG:SP1402_1 KEGG:ns NR:ns ## COG: SP1402_1 COG0144 # Protein_GI_number: 15901256 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pneumoniae TIGR4 # 2 162 1 158 280 145 47.0 5e-35 MLNLPNEFKTKYEKLLGTKKAQELFAAMNEESKKAFRINTLKPTKVSYELTDSVPQINSA YYGEVSGEDPEWVSGSVYSQDPAAMFPAAISGVRPGERVLDLCAAPGGKITALGEQLKGE GLLVANEISATRVKALRENIERWGISNALITNESPEKLVPIF >gi|227861716|gb|ACKR01000183.1| GENE 22 26955 - 27854 682 299 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01182 NR:ns ## KEGG: LCRIS_01182 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 299 1 304 304 585 98.0 1e-166 MLSNIESNYADELLEAHGLTNNTRYFRTDSDDKISTFLKYLDKNYANHQIQLHLDNNYEK KQVLVWANHAVTGLPTESGRYFSPDDFKGQVSFVVLGPTVKLNLLDVQNNKYVILGKNYY SVIGEFKDYPQVEMDKYYLSTGIDQPTAKDQLKNYRIVVDATPAVIEKIAKHYHASLHIP SFVQEHHRDRLSVVPDILMLVVCLLVGMITNMLLAIGIKRQARLTRLHDDLLRNWVINRS VRLFFALATYFFLRWHAFYSTYGSLIVTLIASWVVIVLAFCGMVYYLVRKDRKIAKSTK >gi|227861716|gb|ACKR01000183.1| GENE 23 27907 - 28659 564 250 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01183 NR:ns ## KEGG: LCRIS_01183 # Name: not_defined # Def: SAM-dependent methyltransferase # Organism: L.crispatus # Pathway: not_defined # 1 250 1 250 250 487 99.0 1e-136 MTKFLTKLTKLEQEINHTAVKRQVEEIALIDSYVQAGKPLKRAPRRLGLLPDEFEEVLVE VGPDKEGALRDLNNLLNNFRQYLSLIYGIWSLPNIQTAQLIKNKLHVQTALEIMAGNAYW SQALTQVGIKVHSTDSLEWAKTSTTGAKPFYPVEDLPADQAIKKYHTVNLVLCSWSPNFG HGDLETVAAWHKYNPSCHLLFVGEKDGATNSPEFWHQNWFKNSAALDEINHSLQSFDFIN EQVFEIKNEF >gi|227861716|gb|ACKR01000183.1| GENE 24 28742 - 29305 592 187 aa, chain + ## HITS:1 COG:SA0826 KEGG:ns NR:ns ## COG: SA0826 COG0681 # Protein_GI_number: 15926554 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Staphylococcus aureus N315 # 17 185 5 181 191 124 39.0 9e-29 MVETKKRNDDESIGRFVLDIIIMFAILMGIYYFIFSFFLSNETVSGPSMQPTFENGDRLI AVRHFTPKRNDIVILKAPDQKGALYIKRIIGTPGDMVTSKNDKLYINGKQIAEPYLNNGY QRKSHKLGELYTNNFTLKKRVPKDSYFVMGDHRDVSKDSRYFGFVKRSALVGRVVFRYWP FTQWKTF >gi|227861716|gb|ACKR01000183.1| GENE 25 29377 - 29565 331 62 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01185 NR:ns ## KEGG: LCRIS_01185 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 62 1 62 62 96 98.0 2e-19 MNEQEELSDAIINFQVKHHVNDTDLAFASHLSVEKVHAMKVGDGQFTAEEVNQLYDYMSA NA >gi|227861716|gb|ACKR01000183.1| GENE 26 29624 - 30412 372 262 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01186 NR:ns ## KEGG: LCRIS_01186 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 262 11 272 272 446 99.0 1e-124 MWTQKRKFIYLVFLINIFAVVFLSGYFLLFKNWNGLANLPSKNLGQFWRNNFVYVTLYID FAFCAITCWQNEKINLSQTWHLAASDERKTYLANIFSSLLACGYFFLLQEIVNSLLLIPS CGADSFAQAFREFGLYPIKTVPGVEITSNRMLAFHWLFIILIILIIYFFVSFANFSSRVI TDFLPFKSTVWARLLIIAILVIVAAYCGMIFMSKLQGFVDKSPNLQATDPIWLDDLCLFI VSLVFGILNLVFVKKYLEPKID >gi|227861716|gb|ACKR01000183.1| GENE 27 30463 - 31272 837 269 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01187 NR:ns ## KEGG: LCRIS_01187 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 269 1 269 269 431 99.0 1e-119 MANFKTLFKQMFVQKRRYANLVLLLQVFAVLFLLVMALLDKSNLAYLNISKDSNWLDRLL SAGMLETPIADVIFVGLLCWQNEKINLSQTWQLAPASSVKIWLINMLSSLVECIYIFVIQ VILGFVAAMIDNLSHHYSLLHDLVDAKVTWADASLLIEFLLFLTGTVLVIMTFVSFANFL TKVIVDQLPVNNNIVIKLFVMAVIVIIAILIAEQLNEQITAMYLHRFAKEAAYDPLGISV VEYFAGAIVLGAIDSYLMSKFVEPKIINR >gi|227861716|gb|ACKR01000183.1| GENE 28 31282 - 32112 623 276 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01188 NR:ns ## KEGG: LCRIS_01188 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 276 1 276 276 427 98.0 1e-118 MTSFNTLFNRMFQEKSKSVYLIFLIQAFASLCFTIIGFVSENGTPEFVNGKDTSSVNVIV AFLAVFAVMMLITSFIADFVYWIISSIKNEKINRSQTWRLIPVTDTKFLLSNFGTAFLTY IWLGILEAVTIIVTLLPMLSDQDVRKAIGQASIHLSARDWQTMLGSLLLIIFIGYAWYAI VSLLNLASRSIIDFLPGGSSKVWTFIIRVIVIIAIIWILGHAATIIFSVLGKFSPFMVNS QDINYATTILQFLVFDVVITLIDILLLNKFVEAKQN >gi|227861716|gb|ACKR01000183.1| GENE 29 32112 - 32834 204 240 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 6 215 1 219 311 83 26 2e-15 MVGIRMNDLLAIKDVSYKKNQKQVLQDVNLNLAPGKIVALLGENGAGKTTLMRIIAGVAK NYKGEINLEGATKETERKAKLSFTDGLTGFSDSTKIKEVVKFYATIFQDFDENEFDELRK FMKLDPEMKLSQLSRGMREKLIIALTFARKADLYLLDEPFGGIDAMARKKIINSIILWKD EKATILISDHFVNEISSLLDEVAIVKDHTVLEHKSADDIRQTHKSIEEYYESFYADEDDE >gi|227861716|gb|ACKR01000183.1| GENE 30 32812 - 33186 396 124 aa, chain - ## HITS:1 COG:BH0383 KEGG:ns NR:ns ## COG: BH0383 COG1725 # Protein_GI_number: 15612946 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 3 120 5 122 126 92 43.0 2e-19 MEFKDNMPIYLQIEQYLYRQIALGKLTAGEKIPSVRKLALELTVNVNTVQRALQQMNSQG ILYTKRGEGNFVTEDTKLLSETKQSLINNELEQFVQNMEEFGIGKNELVSTLENYLKNGG DQNE >gi|227861716|gb|ACKR01000183.1| GENE 31 33493 - 34734 1585 413 aa, chain - ## HITS:1 COG:L60596 KEGG:ns NR:ns ## COG: L60596 COG2195 # Protein_GI_number: 15673792 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Lactococcus lactis # 1 413 1 413 413 446 54.0 1e-125 MEYPNLLPRFLKYVKVNSRSDEHSDRFPSTEREENFQKNVIMKDLEELGLSDIHYNQNAG SVIAEIPSNVDYDVPVMGFLAHSDTADFNSENVKPQIHENYDGESKIQLGDSEFYLDPKV FPHLKNYKGQTIITASGDTLLGGDDKCGVSELMTFAEYLMNHPEIKHGKIRLAFTPDEEI GTGAEHFDVEDFGADFAFTVDGEAPGKLDWGTFSAAQFSLDIQGVNVHPAVAKGQMINAI QVGIDFHNQLPEHDRPEHTDGREGFFHLMNFAGTVDNAHLDYIIRDFERDGLEERKNLVK SIVKKMNDEFGTERITLKMWDQYYNMADELKKHMDIVDLARDAYKAEGLEVNEDPVRGGT DGSQLTYMGLPCPNIFAGEENMHGRYEYTVLESMWKAVDVMIKMAELNAERAK >gi|227861716|gb|ACKR01000183.1| GENE 32 34753 - 35550 858 265 aa, chain - ## HITS:1 COG:SP1609 KEGG:ns NR:ns ## COG: SP1609 COG0327 # Protein_GI_number: 15901449 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 16 264 15 265 265 182 36.0 6e-46 MTKVKDIVARLRQDFPENIASQGDPVGMQIGSMEADVTKVMTTLDVRPQVVEEAVEKGVD FIVSHHPVMFRPAQNLDFANAQNAMYGNIIKNGITVYSIHTNSDKAQDGSADWQAEELGL QDVEPFCLDDDGIAMGRKGKLPRTMTAYDFAYYVKEKMQIKMARLITANNEKPITSVGFI CGDGGKYWTRALDDHLDAFITGDVYYHVGHDMISSGLTVVDPGHYTEKLFKYKVYGRLKK WNEENNWNVGIELSEVSTNPFQDLF >gi|227861716|gb|ACKR01000183.1| GENE 33 35547 - 36230 761 227 aa, chain - ## HITS:1 COG:L84257 KEGG:ns NR:ns ## COG: L84257 COG2384 # Protein_GI_number: 15673054 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Lactococcus lactis # 1 214 6 228 230 161 42.0 9e-40 MNLRLNTLAKMVDPGSRVADIGTDHAYLPIELVKNGKIDYAIASDVAEGPLENAKNDIAA AGLTEQIETRLGSGLETVTHADQIDTVVIAGMGGKLMTDILDRAWSKDAQFKTLVLEPNI GEAGVRNWLMMHNYKIISEKLIAEAGHTYELIKASLTEEKHEMTEKEIFFGPFIVQEKNP VFYQKWEGQLAYYQRFLVNLNKARKKDEDRINEVDHDIKLIKEELEK >gi|227861716|gb|ACKR01000183.1| GENE 34 36331 - 36771 400 146 aa, chain + ## HITS:1 COG:SP0740 KEGG:ns NR:ns ## COG: SP0740 COG0494 # Protein_GI_number: 15900635 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 135 1 136 151 145 55.0 3e-35 MSRTENVTLTNMCMVKNKDQVLVLDRNDPVWPGLTFPGGHVEAHESFHDSVVREVKEETG LTISHPQLVGVKQFYDHNDERYLVFFYIAEQFSGTVKESDEGKLTWMSAKELKKQKLAYN FDHDLPVFFEQTISEHMLDGKRDELF >gi|227861716|gb|ACKR01000183.1| GENE 35 36771 - 37445 599 224 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01195 NR:ns ## KEGG: LCRIS_01195 # Name: not_defined # Def: enterolysin A # Organism: L.crispatus # Pathway: not_defined # 1 224 1 224 224 365 99.0 1e-100 MKKTESKFALLAALIAILAFASIPLWQNNLNSLRPQTHTVKKKKTAKKKKVVHLTWGYPF KKLYEKKIKFKSGQKFGETDVIRRVYPSKSYFHDGYDFGFSEVGHSSVYAVHAGTVHRVK YAPGLGLYIWIISDDGYVEVYQEGFLSITDIYVKKGQKVKLGQKIGKLTGSHIHLGVTKT DKDYIDKKHDNTPCKYYWKDNGTWLNPMKIIEDNLRAAGKDPVQ Prediction of potential genes in microbial genomes Time: Wed May 25 06:44:30 2011 Seq name: gi|227861703|gb|ACKR01000184.1| Lactobacillus crispatus JV-V01 contig00200, whole genome shotgun sequence Length of sequence - 12304 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 4, operones - 1 average op.length - 9.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 31/0.000 - CDS 32 - 1144 1186 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 2 1 Op 2 . - CDS 1160 - 2980 1569 ## COG0358 DNA primase (bacterial type) 3 1 Op 3 19/0.000 - CDS 3010 - 5073 2577 ## COG0751 Glycyl-tRNA synthetase, beta subunit 4 1 Op 4 3/0.000 - CDS 5066 - 5983 973 ## COG0752 Glycyl-tRNA synthetase, alpha subunit - Prom 6004 - 6063 3.6 - Term 6010 - 6043 4.0 5 1 Op 5 16/0.000 - CDS 6243 - 6998 552 ## COG1381 Recombinational DNA repair protein (RecF pathway) - Term 7317 - 7347 -0.9 6 1 Op 6 2/0.000 - CDS 7368 - 8270 981 ## COG1159 GTPase 7 1 Op 7 17/0.000 - CDS 8270 - 8794 588 ## COG0319 Predicted metal-dependent hydrolase 8 1 Op 8 1/0.000 - CDS 8797 - 9756 751 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 9 1 Op 9 . - CDS 9782 - 10225 475 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 - Prom 10253 - 10312 7.8 - Term 10335 - 10374 5.2 10 2 Tu 1 . - CDS 10386 - 10562 292 ## PROTEIN SUPPORTED gi|58337487|ref|YP_194072.1| 30S ribosomal protein S21 - Prom 10761 - 10820 8.7 + Prom 10696 - 10755 7.3 11 3 Tu 1 . + CDS 10790 - 11626 963 ## COG1806 Uncharacterized protein conserved in bacteria + Term 11659 - 11697 7.0 - Term 11938 - 11997 9.2 12 4 Tu 1 . - CDS 12058 - 12303 114 ## gi|262046503|ref|ZP_06019465.1| hypothetical protein HMPREF0508_00809 Predicted protein(s) >gi|227861703|gb|ACKR01000184.1| GENE 1 32 - 1144 1186 370 aa, chain - ## HITS:1 COG:lin1491 KEGG:ns NR:ns ## COG: lin1491 COG0568 # Protein_GI_number: 16800559 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Listeria innocua # 9 370 13 374 374 462 72.0 1e-130 MAEKETTQKLSLDKMVKQVVKDVKKDKSITEEDFTARLIKPYNLQGKAVDQLVQEFEDNG ISIVDENGDPSKLALKKQKDVEKAELKDMSAPSSVRMNDPVRMYLKEIGRVPLLTADQEI ALAKRIESGDEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYR LGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEE IGAEMNMPTNKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKE QLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS RSNQLRDFMD >gi|227861703|gb|ACKR01000184.1| GENE 2 1160 - 2980 1569 606 aa, chain - ## HITS:1 COG:lin1492 KEGG:ns NR:ns ## COG: lin1492 COG0358 # Protein_GI_number: 16800560 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Listeria innocua # 3 605 2 620 626 375 35.0 1e-103 MAGRIPEDFISEVRSNVNIVDVISQYVSLEKKGKDYIGLCPFHQEKTPSFTVNADKQFFK CFGCGKGGNVFKFLMYKDDLTFPESVERVAEFAHIAMPNGYGHNSGTKLNPLMQMHQDAV DFYHRVLLTTKAGERGMQYAQKRELDQEILDHFKIGYAPKADNVLITYLRSKGYQDDDLA QSGLFVQARDGQLYDRFRDRLMFPLDNENGRTIGFSGRRISDDKTEAKYMNSPETGIFTK SKVLFHFAEAKKAARGEGHLVLYEGYMDVIAAYKAGVKSGIASMGTSLTDDQIYLLRRIT PNIIINYDGDDPGVHAEERAARMFNKDGNFNLGIVVLPEKLDPDEYVKKYGAEKYLEEVK GALTPTDFFLKRLEQKYNLDNDREKIAYLGEAVKEIAQVRNPVEQDMYTEKLAKSSGVSI ASLKANLAKERRRNNRARNHVRNSQRNSPDYPIDVPLPGDEDVPTEQSVVEKNPSQTRLL YLFIHSTDAQKYMLEGQFHFPNQDFETLAQDWLKYAETHENPQIDGFLDFIPEQLQGIIV DAEMAQMPKDSTIQEVDALVLALKRRNIYSRLNELQAQLQDAKRKNDAQGIIAITQEIIG LKRILG >gi|227861703|gb|ACKR01000184.1| GENE 3 3010 - 5073 2577 687 aa, chain - ## HITS:1 COG:lin1495 KEGG:ns NR:ns ## COG: lin1495 COG0751 # Protein_GI_number: 16800563 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Listeria innocua # 1 687 1 688 688 621 44.0 1e-177 MAKDYLFEIGTEEMPAHVVPRSVKQLADRTRKFLKENGLKFKDIKTFSTPRRLTILVEDL AEKQDDIDEVKKGPAKKIAQDQDGNWTKAAQGFARGQGMTTDDIYFEELKGTEYAYVHVQ KEGKKASDILLGMSDIIKAMTFPTKMRWDSNDFEFVRPIHWLVSLFGSDVIPVKILDITA GRKTQGHRFLGDSVVLANADDYEDALKDQFVIADADERKDMIVRQMNELVKKNNWQVKPD RDLLEEVTYLVEYPTVFAGSFDEKYLKIPDEVLITSMKDNQRYFEVYDETGKLINHFIAV RNGNKDYLDNVISGNEKVLVARLDDAQFFYDEDRKYPLSHFVDRLKNVSFHDKIGSMAEK MQRVRMIGDYLAKRWDLPENVVKDFDRASELYKFDLVTQMVGEFAELQGVMGMHYARLAG EDEEVSVAIKEHYMPATAEGPLPETTVGSLLSIADKIDTIVTFFGAGMIPTSSNDPYALR RYAYGIVRILLNEKWSLPFNEVLPEIISMLNGVTPAKLPKSDADQEIADFIRDRVKQYLQ KNDFKYDIIDAVLASSQQDPSQILAAATVLQLHHDDEEFKPVVESLTRIDNILKKAKFKS NTAVDESLFDDNSEKELYAGVQNLQDIESLADLYQGFVQLQPVIDQYFETNMIMAKDEKV KNNRLAQLYAVNELADRLGDLSKLVIK >gi|227861703|gb|ACKR01000184.1| GENE 4 5066 - 5983 973 305 aa, chain - ## HITS:1 COG:BS_glyQ KEGG:ns NR:ns ## COG: BS_glyQ COG0752 # Protein_GI_number: 16079581 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Bacillus subtilis # 6 293 1 288 295 455 70.0 1e-128 MADKKLNIQNMIFKLEQFWSSKGCMIMPSYDVEKGAGTMSPYTFLRAVGPEPWAACYVEP SRRPADGRYGENPNRLFQHHQFQVVIKPAPKDIQQYYLDSLKVLGIDPLEHDIRFVEDNW ANPSMGCAGVGWEVWLDGMEVSQFTYFQVVGELDVKPTMSEITYGVERLASYIQDVNSVF DLEWGNGILYRDIFKQPEYEHSKYAFEESNQEQLLQFFDIYEATAKRLLDKNLVHPAYDY ILKCSHTFNLLDARGAVSVTERAGYLSRIRNLAHEVAVKFVEEREKRGFPLLKSAEDKKA GVENG >gi|227861703|gb|ACKR01000184.1| GENE 5 6243 - 6998 552 251 aa, chain - ## HITS:1 COG:lin1497 KEGG:ns NR:ns ## COG: lin1497 COG1381 # Protein_GI_number: 16800565 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Listeria innocua # 5 247 1 242 255 159 34.0 4e-39 MARELKEVQGIIFKRQKYKEADLLAKIMTKQDGIMTLIVKGALRPKSRLSAATLNFSIGT YVIYTSEKGLSNLRTYKGARQFDGLYNDLTKNAYISFIFDLIDHAFVEYQPIGKYYDLAL FALKKIDSGVDAEMITQIVQMKILAAYGVEPQLKHCVICGKEKGVFDYSIKMGGVICSDH FSTVTSRMHLKPKETAVIRTIGLLPIERLGDIKINEETKRATRKAIDRIYHETIGLNLKT KKFLDELKLFS >gi|227861703|gb|ACKR01000184.1| GENE 6 7368 - 8270 981 300 aa, chain - ## HITS:1 COG:SA1396 KEGG:ns NR:ns ## COG: SA1396 COG1159 # Protein_GI_number: 15927147 # Func_class: R General function prediction only # Function: GTPase # Organism: Staphylococcus aureus N315 # 5 295 3 294 299 331 54.0 1e-90 MEEKEFKSGFVALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDEMQVVF VDTPGIFKPHSKLDDYMDKASVSSLNDVDLVLFMVEPEEMGKGDQYIANLLKEVKVPVLL VINKVDEIHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLKTIKEYLPVGPQYYGA DQITDRPEYFVVAELIREQILRLTSQEVPHATAVAVDHMNTHQNGKLLIEATIYVEKDGQ KGIIIGKGGKMLKQIGINSRQEIERLLGEKVNLRLWVKVQHNWRSDPNFLKRIGYDKKEL >gi|227861703|gb|ACKR01000184.1| GENE 7 8270 - 8794 588 174 aa, chain - ## HITS:1 COG:SA1399 KEGG:ns NR:ns ## COG: SA1399 COG0319 # Protein_GI_number: 15927150 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Staphylococcus aureus N315 # 6 161 4 152 155 114 42.0 1e-25 MDPIDITYNDEVGFLDDEKRNWQDWIMKLLLLAKKEIGKDNNLEMSINFVDEDRSHEINL KYRDKDRPTDVISFAIEDGEDSIDLAAFADDPDFQEDIGDLFMCPSVIKRHSKEYGTGFD REFGYTIVHGFLHLNGYDHIKPDEAKEMFGIQGKVLEDYGLPLYPDQLDEGRGK >gi|227861703|gb|ACKR01000184.1| GENE 8 8797 - 9756 751 319 aa, chain - ## HITS:1 COG:SP0948 KEGG:ns NR:ns ## COG: SP0948 COG1702 # Protein_GI_number: 15900827 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Streptococcus pneumoniae TIGR4 # 11 313 13 314 322 366 61.0 1e-101 MAQTTFTPQRPENIQKLVGVNDGNLKLLSEGYDISVSDVGNEIVIAGDDEEKIKKVVAVL KALDSVVNTGVNIGAPDTVSAMKMADKGTTEYFADLYKKVLIRDAKGRPIRVKNMGQKRY VEAIDKSDVVFGIGPAGTGKTFLAVVCAIAAFKKGEVSRIILTRPAVEAGESLGFLPGDL KEKVDPYLRPIYDSLYAILGTNTTDRLMERGVIEVAPLAYMRGRTLDDAFVILDEAQNTT DAQMKMFLTRLGFNSKMVVNGDMTQVDLPGRQHSGLIDARHILKNIDQIKFINFSANDVV RHPVVAKIITAYEKEDIKH >gi|227861703|gb|ACKR01000184.1| GENE 9 9782 - 10225 475 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 147 1 147 147 187 63 3e-47 MSLSDQIMADMKSAMKNHDKTTLNTVRMIKSALMNEKIKAGHDLTPDEELTVLNREKKQR EESIDEFIKANRDDLAEETKKELAVVEKYMPKQMNQDELRAAVKETIDEVGAKGKSDFGK VMKALMPKIKGRADGKAASQSVRDQLN >gi|227861703|gb|ACKR01000184.1| GENE 10 10386 - 10562 292 58 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|58337487|ref|YP_194072.1| 30S ribosomal protein S21 [Lactobacillus acidophilus NCFM] # 1 58 1 58 58 117 100 5e-26 MAKTIVHENESIDDALRRFKRSVSRSGTLQEYRKREFYEKPSVRRKLKSEAARKRRHY >gi|227861703|gb|ACKR01000184.1| GENE 11 10790 - 11626 963 278 aa, chain + ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 12 267 10 264 270 218 43.0 1e-56 MVETKDQNELNIIIISDAAGDTAFSNATAAAAEFPNCNINYRRYPFITNQKKLDEVLTEI EKYPNLVIIYSLVKDEMQMPVIKFAREHNVECVDIFSPVVEAIQQTTHMTPDQKIGAQHS LNQKYFDRISAMEFAVMYDDGKDPKGFLEADVVLLGVSRTSKTPLSLFLANKNLKVANLP LVPETHIPKEIYEIDPKKIIGLTNDPSVLNEIRRQRMIAYGLNPDTTYSNMDSINKELES AQALYKKLGCYVINVAHRSIEETAALILEHLGIDDYAK >gi|227861703|gb|ACKR01000184.1| GENE 12 12058 - 12303 114 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|262046503|ref|ZP_06019465.1| ## NR: gi|262046503|ref|ZP_06019465.1| hypothetical protein HMPREF0508_00809 [Lactobacillus crispatus MV-3A-US] # 1 81 2 82 82 142 100.0 6e-33 LTPYAIIETVLKIHQEYNLDSIPVFCNVAHYLDETQLKELSKIVRQLKLKIILIEFTDKK YGVAVKDAQVAYIDRDLVDWY Prediction of potential genes in microbial genomes Time: Wed May 25 06:44:38 2011 Seq name: gi|227861698|gb|ACKR01000185.1| Lactobacillus crispatus JV-V01 contig00201, whole genome shotgun sequence Length of sequence - 3451 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 424 277 ## LSL_0100 CRISPR-associated Csn2 family protein 2 1 Op 2 4/0.000 - CDS 421 - 726 194 ## COG3512 Uncharacterized protein conserved in bacteria 3 1 Op 3 5/0.000 - CDS 704 - 1612 272 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair - Prom 1634 - 1693 5.9 - Term 1770 - 1808 6.2 4 1 Op 4 . - CDS 1816 - 3450 1556 ## COG3513 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|227861698|gb|ACKR01000185.1| GENE 1 1 - 424 277 141 aa, chain - ## HITS:1 COG:no KEGG:LSL_0100 NR:ns ## KEGG: LSL_0100 # Name: not_defined # Def: CRISPR-associated Csn2 family protein # Organism: L.salivarius # Pathway: not_defined # 1 139 1 141 223 76 36.0 3e-13 MIVSYLSHKKICLKDGINVICTQSPIAYKDLVLGFQALNDLIVCSDDEYNNKSISKSFDF VGAPLLNDNIMAKYMNVIIKNFISNLDEVNRNRILKSFYSLETVLNDSLLLEDLPLEIDF SEDIKKLLKMVNIHLDAQLML >gi|227861698|gb|ACKR01000185.1| GENE 2 421 - 726 194 101 aa, chain - ## HITS:1 COG:SPy1048 KEGG:ns NR:ns ## COG: SPy1048 COG3512 # Protein_GI_number: 15675043 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 101 6 106 113 92 46.0 2e-19 MRLMIMFDLPTDTAAERKEYRQFRKALINEGFLMIQFSVYERVCVTRQTANFLEKRIRKF MPSKGVVQSLMVTEKQYSDMHFLVGDAVKDIRNTSDRTVIL >gi|227861698|gb|ACKR01000185.1| GENE 3 704 - 1612 272 302 aa, chain - ## HITS:1 COG:SPy1047 KEGG:ns NR:ns ## COG: SPy1047 COG1518 # Protein_GI_number: 15675042 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 2 279 3 280 289 184 38.0 2e-46 MGWRNVIITQHAKLTYSMNMLIVQTKDGINQIPIEDINLVLISTSQAVITSALISKLAKN QCKVIFVDDKYQPVTETVNYYPGARDIKKLKMQFEWNERRKENLWTKIVAAKLKNQISVL KNYRIDETEVEQELYKLEVNDLSNREAAAARKYFMKLFGKDFIRRNSGVINAALDYGYSI LLSSFDREIAMNGYLTYLGIHHHSVENQFNLACDLMEPFRSIVDYWVKAHENITSFTPDI KYGLVELLSLQIKFNGRNTILTNAISVYVRSCLRYLSGETDDIRIEMSLCNEVPNDAIND NV >gi|227861698|gb|ACKR01000185.1| GENE 4 1816 - 3450 1556 544 aa, chain - ## HITS:1 COG:SPy1046 KEGG:ns NR:ns ## COG: SPy1046 COG3513 # Protein_GI_number: 15675041 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 544 810 1365 1368 166 27.0 1e-40 KYYLYFMQLGRDAYTGKPINIDEVSQYYDIDHILPQSFIKDDSLNNRVLVAKPINNGKSD GVPLKLFGDNLATGLGITVKQMWNNWADKGLINKAKQNNLFLDPENINKHQASGFIRKQL VETSQIIKLATTILQAEYPKTKIIVVKASSNHYLRNEFDLYKSREVNDYHHAIDAYLTTI CGNLLYQAYPKLRPFFVYGQFKKFSSDPKKENEILKKTKNFDFVAKLLGSKAPNEIRSQQ GKVLFEKNKIRLQLNKAYNYKYMLVSRDTTTKNQEMFGMTIYPRAERDIAKSRKLIEKRK GFSTDIYGGYTGTAAAYMAIVRINKTKSSQYKVIAVPMTKRAILNKAEKEGNYEKILKQI LSPSILYNDKGKRKAGVISFDIIKGKVPYNQVVQDGNKKFLLKSAIYLCNAKQLVLSEEA MRVITGHWLDSDKQDQELLDVYDEILEKIDRYLPLFDIRDFRNKLHKGREKFLKLNAEDK FKAIIQILKGLHDNSDTGELKDIGITVPFGQLQNNSGITLSSDTILVYQSPTGLFEKRVK ISSL Prediction of potential genes in microbial genomes Time: Wed May 25 06:44:47 2011 Seq name: gi|227861675|gb|ACKR01000186.1| Lactobacillus crispatus JV-V01 contig00202, whole genome shotgun sequence Length of sequence - 23804 bp Number of predicted genes - 21, with homology - 21 Number of transcription units - 5, operones - 2 average op.length - 9.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 180 - 239 6.5 1 1 Tu 1 . + CDS 291 - 914 495 ## LCRIS_01224 enterolysin A + Term 947 - 990 3.0 - Term 935 - 978 -0.8 2 2 Tu 1 . - CDS 985 - 1551 476 ## COG0225 Peptide methionine sulfoxide reductase - Prom 1619 - 1678 9.6 - Term 1769 - 1802 -0.7 3 3 Op 1 . - CDS 1817 - 2701 836 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 4 3 Op 2 . - CDS 2694 - 3122 502 ## gi|227878710|ref|ZP_03996622.1| phiAdh family holin 5 3 Op 3 . - CDS 3112 - 3297 136 ## gi|227878711|ref|ZP_03996623.1| hypothetical protein HMPREF0506_1624 6 3 Op 4 . - CDS 3308 - 3703 384 ## gi|227878712|ref|ZP_03996624.1| conserved hypothetical protein 7 3 Op 5 . - CDS 3720 - 6107 2249 ## LJ1423 Lj928 prophage protein 8 3 Op 6 . - CDS 6161 - 6544 456 ## gi|227878714|ref|ZP_03996626.1| hypothetical protein HMPREF0506_1627 9 3 Op 7 . - CDS 6516 - 6710 235 ## gi|227878715|ref|ZP_03996627.1| hypothetical protein HMPREF0506_1628 10 3 Op 8 4/0.000 - CDS 6715 - 10122 3333 ## COG4926 Phage-related protein 11 3 Op 9 . - CDS 10122 - 10883 354 ## COG4722 Phage-related protein 12 3 Op 10 . - CDS 10873 - 17892 5323 ## COG5283 Phage-related tail protein - Prom 17921 - 17980 2.8 - Term 17908 - 17936 -1.0 13 4 Tu 1 . - CDS 18126 - 18539 510 ## gi|227878720|ref|ZP_03996632.1| hypothetical protein HMPREF0506_1633 - Prom 18559 - 18618 1.8 14 5 Op 1 . - CDS 18620 - 19396 1014 ## LSL_0290 phage major tail protein 15 5 Op 2 . - CDS 19396 - 19770 255 ## gi|227878722|ref|ZP_03996634.1| hypothetical protein HMPREF0506_1635 16 5 Op 3 . - CDS 19767 - 20165 429 ## JDM1_0991 hypothetical protein 17 5 Op 4 . - CDS 20158 - 20520 382 ## gi|256849991|ref|ZP_05555422.1| predicted protein 18 5 Op 5 . - CDS 20477 - 20866 355 ## PEPE_1000 hypothetical protein 19 5 Op 6 . - CDS 20883 - 22241 1500 ## PEPE_1001 phage phi-C31 GP36 major capsid-like protein 20 5 Op 7 3/0.000 - CDS 22260 - 22946 758 ## COG0740 Protease subunit of ATP-dependent Clp proteases 21 5 Op 8 . - CDS 22909 - 23802 684 ## COG4695 Phage-related protein Predicted protein(s) >gi|227861675|gb|ACKR01000186.1| GENE 1 291 - 914 495 207 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01224 NR:ns ## KEGG: LCRIS_01224 # Name: not_defined # Def: enterolysin A # Organism: L.crispatus # Pathway: not_defined # 1 207 1 207 207 397 99.0 1e-109 MKFRKLIISLLGTALLTSSVGLSTTTASADTLDDSQNTTEVQPKNLKWAYPFKANKKNGV RPMYNAQTFGITNYMRSTTPPSYFHDGWDFGFSEVGHSNVYAIHQGTVKKVAYGNGLGWF IWVISPDNYVEVYQEGFNKKKDIYVKTGQKIKLGQKIGKLTGSHLHLGVTQTNKDYINKY GFPCKNWNVNNGTWLNPIEVIKSNLKK >gi|227861675|gb|ACKR01000186.1| GENE 2 985 - 1551 476 188 aa, chain - ## HITS:1 COG:SPy0466 KEGG:ns NR:ns ## COG: SPy0466 COG0225 # Protein_GI_number: 15674584 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 20 187 2 168 169 230 66.0 1e-60 MTENNKQAKTTDTKGKANCDTAIFAGGCFWCMVEPFDTVDGVEKVVSGYTGGHVANPTYE QVCSGTTGHTEAVEITFDPAKISYDQLLNYYWQVTDPTDAMGQFQDRGDNYRPVIFYNSP AQKEAAEKSKQRLQASGKFDKPIVTKIEPAKPFYPAEEYHQDFYKKDPLRYAMEEAGGRA KFIKEHWD >gi|227861675|gb|ACKR01000186.1| GENE 3 1817 - 2701 836 294 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 2 261 150 387 444 94 30.0 3e-19 MISKKSYGVDVAKYQPESLRVYAKAGAKYAIVQVSVSNSIVAPRAKAQITSAKANNIMPM GYFYGCFGHSATQAASEAHFAIKNAKSIGLPKGSYLGVDWERTDNNVNGNVSQNTAAIIQ AMKVIRDAGYIPLLYSGADLLRNKINTKQIIKQFGTCLWVASYPVSSRVNTANFNYFPSM DGVAIWQFTDNWHGLSVDGDINVIDLKGTTKKYASKSKWVKKSGTFILGEALKIHTSPHI NSPAIAKLQKGSVIKYDATLQGPLRLWLRQPRNNGKYGYVVGKDKYGKKLGKFK >gi|227861675|gb|ACKR01000186.1| GENE 4 2694 - 3122 502 142 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878710|ref|ZP_03996622.1| ## NR: gi|227878710|ref|ZP_03996622.1| phiAdh family holin [Lactobacillus crispatus JV-V01] # 1 142 1 142 142 236 100.0 4e-61 MKTEIVINLIWAVVLVLAMFIGAWYKNNQAKVEKIRLTHPEMGHVLDIVGMLALKASNYQ ETQDDKNGDQKLDDATDSAYNQIKALYPAISISKDTVRNMVQFAYDTIVAKTNTDLKQEQ NNMAKVKNSDNAEQKKDDIVND >gi|227861675|gb|ACKR01000186.1| GENE 5 3112 - 3297 136 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878711|ref|ZP_03996623.1| ## NR: gi|227878711|ref|ZP_03996623.1| hypothetical protein HMPREF0506_1624 [Lactobacillus crispatus JV-V01] # 1 61 4 64 64 87 98.0 3e-16 MQDLSNLIASIAALMGAVSAFYQVIMKNKRNPPSDEKELDEAKKEIEDLKSELKGKNKDE N >gi|227861675|gb|ACKR01000186.1| GENE 6 3308 - 3703 384 131 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878712|ref|ZP_03996624.1| ## NR: gi|227878712|ref|ZP_03996624.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 131 13 143 143 236 100.0 4e-61 MIKRWRKLSALEMFVNLGQLGISLWVIAIGCFLIGDKHYFFWPPTFRNIENDTRIDMLII LVGLALFLCTIFLVENKYVIVTLFTLVGAISLALAALSGLHAYFAGHWEMGMDVAHELAL LGATLLVGHFK >gi|227861675|gb|ACKR01000186.1| GENE 7 3720 - 6107 2249 795 aa, chain - ## HITS:1 COG:no KEGG:LJ1423 NR:ns ## KEGG: LJ1423 # Name: not_defined # Def: Lj928 prophage protein # Organism: L.johnsonii # Pathway: not_defined # 10 443 17 436 892 128 26.0 8e-28 MAVKADITIDIDKQVGELQNLTQIYNARVGDNKTPLTIAWRKNDLPLNLKGLHAYIVGKT GDGSYNSETGKIDFPINTPVSQFEDDGSGTLDGGQSGLTTLLIPKQMWQNSGLFAGYIGL KSEDGSVFTSKDIWFKVLGNVLDAGVEINYFIGDFDKALAEAEKKLQDKTDSFDQITNAA LSDLREKYREIAQSSEDLASEYTATLNNITDSLKSMQAYIETHNIVTTDKFENLDKYLTN KVATSYVQPQAFNNLDDLKQKYPNGSNGIMVTTDNGHYYLWNNNSWKDCGTYQSTGIADK SIHLENLSDTLENSLYPNVDEVEITNLLDGYFSKYGTVITQHNASDGDPVHTEKIPVKPG EEYYVYTNNYWDGKAINMMENDTIINYFPSENDAQIKSIKITIPNNVDSLILNGTKQFVP RLFKINSYNQDQDAIDNLAIILKDKEFNFKEINLTQINKTGYWDYTRNGNYTDQAPDNKN AMKSYLPVKVKPFEIYRLTGCSAWNARLYEIIDFQGHLISCCDNENSQSLTTTFMIPKNA AYLEVNEYFLNVQTKLEKAVSIKEKKPLDGLHWGAIGDSWTAIFDKDGKSYVNDVADITG ITATNLGAGGTGYVTGGANNWNNQFFKRNIDADTDICTIFGSFNDAYYPDFKFGQKGDTD TATMWGAMLATINNCYKNNPDVLIGIISPGPWGAINPFKTDTMSKLNSHSDTTVNNMAIN DFAEKYVQTMKEFAQMYSLPFLDLYHQSNLRPWNDDFINKYYHGQSATDTTHPNPNGLKK YIAPRIASFLEKIIK >gi|227861675|gb|ACKR01000186.1| GENE 8 6161 - 6544 456 127 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878714|ref|ZP_03996626.1| ## NR: gi|227878714|ref|ZP_03996626.1| hypothetical protein HMPREF0506_1627 [Lactobacillus crispatus JV-V01] # 1 127 1 127 127 214 100.0 1e-54 MADLILSTNKAYSNAELIRVRQDDYGQTITALITDKTNSPIDLSKAEVSFNVKDWSGDVI SDKATGDVSGNATYAINKSVALATGSAWFEIKNNDQKVATQSFWIQVMEAAEKVVQMADP FGGVSTN >gi|227861675|gb|ACKR01000186.1| GENE 9 6516 - 6710 235 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878715|ref|ZP_03996627.1| ## NR: gi|227878715|ref|ZP_03996627.1| hypothetical protein HMPREF0506_1628 [Lactobacillus crispatus JV-V01] # 1 64 1 64 64 88 100.0 1e-16 MKNDDKVIAHFGTEMANIIAEQALTISKLKVLLEQEQSKNAELNIQIKALRKEDKHGRSD TKHK >gi|227861675|gb|ACKR01000186.1| GENE 10 6715 - 10122 3333 1135 aa, chain - ## HITS:1 COG:SPy0700_1 KEGG:ns NR:ns ## COG: SPy0700_1 COG4926 # Protein_GI_number: 15674761 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Streptococcus pyogenes M1 GAS # 32 256 3 219 431 65 26.0 8e-10 MVETATFDQLKQEYGASEADDQADTVYYLRHPILYANAVDDDETNGLGPLPDFESLTINS VTSQYPTGQGVYPIDGKNFDKLAEREVIMTDGGPDALHQKYRIMNITKTVGSENTVTIDL RHIDGDLADLTIDDNIQLQGASAIEAFNAIDQHLTAANPGIRFDSDVSSLSDVNFSMDTP AGNLLTDPDAEGDSATQSILGLFGGELVFDNWQIHHYQQAGRDINKPLKVGRDIQSLSST TNVESTYTAIYPYVTYKSAPPQATEDNVDWSSYATNWDSVGTVVYHGGGGLPIYDSPVTG QHQIGTVENGQKIKLGTVVHDGDSTPVDADGNIGKVITTVGGHDWYPIEGGGWIDAQWIH FDKTGDYIVNPASGHVTVDASGTKTAGTKYPASGRAVVTYYGNGDKIHVYYSPYQGGDHY RTGKTLKNGQKFTYDYIACDENGNLWYRIGSHEWIYGPHISLNKSSSYASYPSHGRGVMK KNQQQYVMNKKTGRIEPSKKQIKWVSTRTKRTPKYLKRRRNGKTYKILNPRYKEYRKKKV RTTVKRGVYNLNYGQIVQGGVTYYKTSSGVYAKSSSFDWKADQSVKPYGPSKILAQTADM KGKVEVYSAPTKGSAVNWALKDGTGVDVVSTAKGADGKEWYYVKYDGDKYGYIPAKLTNT KGDIDEEPHSTEADSDTDDDSNSTGQDAQTIKVTLPEKILIADNCIGIENQRVLNLDLSS FFKHDYNDTSGLQADGTWQMTDEDVSQLRELANDAMIEHQIGLPPTSIQVTAEQMKGDLD FLNQVCLNDRIGVEDDNAGVHTTAEVTSTEWDALNHRYISINIGDLPKTWQHLLKEQTQQ EIRQATSNTNERIKHSDTLIGRAEYALSLEGDARRAALVAMMKGLKLTDKNGKPLVSIKK FNKYLTEWSGKVLNLQNWVDGTKDAVIRGVDADGKIDWENAVDLVAKDENSEMHFNVNGL SYRDPKTQKIRTAMGSDGSFYAEHGIFGDLITLKGTMVQMDAALRCDTGGFEITIGQTNK YETGTFDSEKGLTVGSKNYALGLSSGQLIISSKEGGLHTGNYGPSYLRLMSPGGHELELN TNTATFRYDGQRFITSSDLEKVLGELQSIKSLMVTHDEMNKSIEDYLKTQTKGKK >gi|227861675|gb|ACKR01000186.1| GENE 11 10122 - 10883 354 253 aa, chain - ## HITS:1 COG:SPy0698 KEGG:ns NR:ns ## COG: SPy0698 COG4722 # Protein_GI_number: 15674760 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Streptococcus pyogenes M1 GAS # 6 249 3 234 238 68 24.0 1e-11 MTDNIGYISYHGKSSADFGFGINIDSKRVHSAPNLTFNQIPSSSIENIFSNAHSRSPTDV SFSCTIDRPERFEDMDDLEDAVMDWLDGSEYAPLRLSWKPTYIYMAIVSTAPDFTQSQDD MESHEIATITFHMQPLKYRADGYYWQSLPKNGQIVNPERLKAYPDWHFKGTGNFVLTVNG MPYQFNNIDGDCYLDGLSADCFQDQATSLNENVVLTNNDAPVFEHGLNTIKFEPQTDASL DLIEWKPNWRRIL >gi|227861675|gb|ACKR01000186.1| GENE 12 10873 - 17892 5323 2339 aa, chain - ## HITS:1 COG:L25762_1 KEGG:ns NR:ns ## COG: L25762_1 COG5283 # Protein_GI_number: 15673370 # Func_class: S Function unknown # Function: Phage-related tail protein # Organism: Lactococcus lactis # 7 667 9 663 1437 404 40.0 1e-111 MRIQNVMATSIKIDTVSATQSLRSMNTALKASTNAWKAEEVQAKSVGNYLKASQARYEGL GRSIDQAKEKIKLIQERQKALDLTTEDGRNSYNRYAKQLGITVKQLSSMTAQQERAKSAM QYQTSGLASLQSRYRSLNEVNSSYVKRLEAEGKKYEAAKTRLTSYKSAVENLTKQQKIQE SELSRIASESGKASSAYHAQEVKVNQTATSISKLNSKVKSAQSEVNKLNPNGFNKIANGA KHVTNAADKMKSSLKNTWEHVKSGATAAAAGIGAVGAAAISGAKKAGNLEQSYKEITNLA VTGGEKQKEAIKNVSEMQRQGRAMSIQYGKSQQDIADSYEELVKRGYTTKQALGAMRTEL QASVASGDDFKDVVAVSSTTLESFGMRAKTTAQMTYNTKRAVNELAYAADMTSTGFKDLG YGMSYVGSSAHQAGFGLSQTAAAMGILSNNGLEASKAGTGLNEVINRLSTATGNLLKGDK KNALAKLGIKPKEITTSTGKLKDLSTVFGVLNKHMQGMSKVQKINIMKSLFGMTGEQAGL ILTKYNKQLGTLSKQTLKAGKDGDYVAKLAKKNSETAKMQMARLKMTGEAFSMTLGAKML PAINRAGDSLVIFLTKTKDGKKLTQDFANGVGAVANGLVDLIKWATTHKTEVKWIFGGLL TGYSVVKGAQFLQFLNKTRLAMSELGVLSKSKTAIKGVGTAFKFTAKLAKAGGKGILTAG KAFGKSFIQSAKGAGSAIKSVGSILGKGAKRVGSDLVDSGKFLGKQLVKGFKGSVKLGKS IGSSLVNGAKSLVTKSVSLGKKIGSAISKGAKSTFKFSESLFEKGNSAGKLTGLLQSAHS AGGFKNLTTAGKVGTGLAGAGVAVDTATSIVKAIKDKVGSRKQYEDVGTSAGKGIGGAIG LWFGGPAGAAVGATIGAKVGKWGGDAVKSFTNGWKSKKPPKNFWSLENLGWSTKDTFSKI GKWGQGVGQKFGQGLNKGKSFAKKNAKELALTAVSPMLGIPALLYKNNPKFRKWANGVGK SVKKGFNSVKKNVGNFNKSVSKNVGNFTKSVGKKYRQFTSSASKTFKKHWDQIYKHSSKG TKQIMRSTEKFGKNYVKINKKYGDETRKNFGSFSKRLKKNHGDLFKTIGQTTKTQLNIEK KRWSASWKNIRSFTGGVWKGLTKNAGDMYKSLNSKTHGGLGKVLTKFKAFGKSVGDFWNN LWKGVRDTFDRTIKGLKDAAGNVGKFFTGKLKVGNIHLADGTDWKKKYGYPAIVNDGSDS PETNNREGLIDTDGTLKIFPNVRNLKWWMLPGQHVVNAHDLATMFGSGVHLASGTLDFDL LKNYKIGDVKTPNLLSKLVKINSQSLKLKLKTYAEDKERHEKTKRRREKKDRKAKRTTRT RKGMEYLDSSFFTGGKSTGKIVSVSKSWLKKYLESKLPKRSRKRTRTTRHKSSSSRSSSR SRNTTTTRRERTSVSASVSGLSSVRSLAAAIKAVSGSHTAKITVSASSAKSVKSLKAALS KVKSKRIKVSISGTKSVKSLLSALKGVGKKSTLKGISSASSRLRTLSKRTKSTKSSIKGL SSANSKASKTNKTLASRLSKTSSKVKSLYKSAKKNKFGKEIKSQAQTAVKSLKGKGNFAQ TFERMTKKFDKDLKIMSKNSRKEFKSMWSSIEKTSKSGENATHKSLNSFSSKYRRGWKSL ESGVSTTFNHFWTTMRKTAGKGLNKVIDVLNSGIGKIDTVIGNFGGNKNAVHKVGGVHYA TGTGYLGSQRRPITGPTLAILNDGFDSPETGNREGVYDKTTGELSVVNGRNVPLVLDQRH EVFNASEMRDLGVTRHFASGTGWLKKLYEEAKKFWKQPIKTAEANFGKVTGLSGAVNTLT KGMMKVATSQSTKWWSQLWKMVQDKVNDDDLGPASGLLKAVEKLGRGTSYSQARRYGPNS YDCSGLVSKAMNEYYHKNWGPLTVAGLWPHAHKISRSEARPGDPIFWLPNYHVGVYAGGD KYWSAFSPSAHPQVGMHSIAGSVPGVKPTFARFNGTNTSGNDSSNKDVKVKANNALQKFI KPQVGKGFWQIIQKIHDKYGDKGVLLNGFAIGEGAPARAKALAKALKRLDPRATRNGIAA ILGNWFFESGGLNPGISNSAGAIGLGQWLDRRPALRAYARRHGKSWKDPATQLNFAMYGD SANTSIFKRILEGHGSISSLAAAFSREWERGGYDSQHVQGANTVRKILGYANGGIVTNPQ IAVVGEGNGPETIVPWDITKRARAYRLIDRTLKHFKQQDAPTSQGEDSKLLLEILKVMTS IEKKLDSEITETRRLGEQPINVSGDFNVDGRKFARYLRTYLREFDRQTVVRGRYNLSDR >gi|227861675|gb|ACKR01000186.1| GENE 13 18126 - 18539 510 137 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878720|ref|ZP_03996632.1| ## NR: gi|227878720|ref|ZP_03996632.1| hypothetical protein HMPREF0506_1633 [Lactobacillus crispatus JV-V01] # 1 137 1 137 137 225 100.0 8e-58 MPIQIDTTPFSSIINKKTIGVEPTGAIFDKAQDIQIELMDGDIKRKETFLEFKKRDRQTA KDVKEFIKKTLSLTTKQWDKINETIDNDVLMKFGMYMALALQGAEYDSYQDYVDFINQQA EEDADTDPKSSNTNEEN >gi|227861675|gb|ACKR01000186.1| GENE 14 18620 - 19396 1014 258 aa, chain - ## HITS:1 COG:no KEGG:LSL_0290 NR:ns ## KEGG: LSL_0290 # Name: not_defined # Def: phage major tail protein # Organism: L.salivarius # Pathway: not_defined # 7 226 4 226 234 115 34.0 2e-24 MSEKLGSAAHGIDLTILSGISEQDGQVVKGDNGLTQDGPYAVDAGIEGATQVEYQTLEAA GTDQFANNKRKRTTRPSQNPTATVTYLDIDWDVLNKVVGYEEDETGGATLDQDHKPHISL LTREPLLDGNFLYEAFANATATYQTSTHATDNTEEQDANVQLSLKAYEPIADVFKLKSGK KMPYKKWNSGSKKFDEAKMLQEVFPGTTAKTVDDILKASTIKTSSAGGNPTPGNSGGSTS GTNTGSGTDSEKKTENSH >gi|227861675|gb|ACKR01000186.1| GENE 15 19396 - 19770 255 124 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878722|ref|ZP_03996634.1| ## NR: gi|227878722|ref|ZP_03996634.1| hypothetical protein HMPREF0506_1635 [Lactobacillus crispatus JV-V01] # 1 124 1 124 124 236 100.0 4e-61 MISPPITEVYKLIAKQDYDWLDLLASGNKAPDATGKYTSILIQNADETPDGIRNNRSTLI RFRIEIQIFFKKGFSQNIYEKRQVIEDLLQDDGWILSDERPPVPDPKTQQTFMTIYFIKN YRRK >gi|227861675|gb|ACKR01000186.1| GENE 16 19767 - 20165 429 132 aa, chain - ## HITS:1 COG:no KEGG:JDM1_0991 NR:ns ## KEGG: JDM1_0991 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_JDM1 # Pathway: not_defined # 2 129 4 131 135 100 44.0 1e-20 MDNFEKQLNQFMEEIKKQVPNKKQKQVATLAGAKVWADSLSHEAKQKHYSNHKDKVYGHM ADNVKVSGKNIDGMVDGSATVGWDKRIHAMNALYTNDGTVKMRGDHWVDEARKSFNPEVF KAEIAALKEMEK >gi|227861675|gb|ACKR01000186.1| GENE 17 20158 - 20520 382 120 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256849991|ref|ZP_05555422.1| ## NR: gi|256849991|ref|ZP_05555422.1| predicted protein [Lactobacillus crispatus MV-1A-US] # 1 120 2 121 121 232 100.0 5e-60 MVRNINPTSLTVLIKFGKPEMKLNEGTGNTENTGIKVKFRTRGRRYSLPITQQFEHSDVN WRQTFVYVVHHRRDWSEVTYAEINGQMYQVTGINPDSANLPNSYDQITLTRIVEGEESDG >gi|227861675|gb|ACKR01000186.1| GENE 18 20477 - 20866 355 129 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1000 NR:ns ## KEGG: PEPE_1000 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 37 117 27 109 110 61 42.0 8e-09 MAKVQFYLTIKDGLEDLLGYIDDDLTEEMKTRMITCLNAAESFVQGSVGPDDGNFYQKNG VKNLYTVACNSYAATLFTYASTISVRRVNNVDDVCRSIIGQLRGKYDAKDDEVNNDGTEH QSDISNGVN >gi|227861675|gb|ACKR01000186.1| GENE 19 20883 - 22241 1500 452 aa, chain - ## HITS:1 COG:no KEGG:PEPE_1001 NR:ns ## KEGG: PEPE_1001 # Name: not_defined # Def: phage phi-C31 GP36 major capsid-like protein # Organism: P.pentosaceus # Pathway: not_defined # 6 428 4 396 410 190 34.0 9e-47 MNGKTINQLHDDWISAGQKVTDLLNKKIGLNEKYKSSYNSMSDEEKANFRKEMEQAKQDY DAAVQARDFAKGTFEDAQEAMKTMPKPTNGVPVEKHNSKSNFADGFRDMLRHPMKYMENI ATSDPNEPNTLGLAIPDDQQTKINTLERQYDSLKDLITVENVGTDHGSRDLEKLSEIKPM PRLDQFDDQSDGTKKKNYNKSQNTDIPEGDYPSIKKINYVIGDYGAIFYASNDLLNDSDA NVEDYLNRHIALKNTVTYNHEIISRLPQSQNKATLKTLDDISDAVMDLDMALWDGSVLLI NKSAFKALKEVRLADGHHALTTDARTNITTFKLDESTYAVVRVVEDRWLPDNKTAAGKFQ SHPFYYGNFKEFLHLFDRQQPQLLTSNIAAHAFERNQTAIRSLLRMDLQVWDDEAIISGS FDKIASQPLIFSSVGVPSSTDAADDANKKSGQ >gi|227861675|gb|ACKR01000186.1| GENE 20 22260 - 22946 758 228 aa, chain - ## HITS:1 COG:L34899 KEGG:ns NR:ns ## COG: L34899 COG0740 # Protein_GI_number: 15673378 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Lactococcus lactis # 1 216 2 213 235 155 42.0 6e-38 METLEVKGIIVPNDLSDVYDWMGYDSVSPSSIRDALNQASGQDIVVEINSRGGYVDAGSE IYTELKKYQGNIDIQIVGYACSAASWIALAGDTVEMSPTAQLMIHRASGGADGNVDDLAS AMQGLDQMDQALVDLYAKRTGKSAQEVYQLMAKESWMNAKTAVANGFVDSIMFEDEQMPA VVNADGVPILSNQVINKIKNLIKEPKLQNKNKPKRQVKNENLSLLLWS >gi|227861675|gb|ACKR01000186.1| GENE 21 22909 - 23802 684 297 aa, chain - ## HITS:1 COG:L35649 KEGG:ns NR:ns ## COG: L35649 COG4695 # Protein_GI_number: 15673379 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 1 279 107 383 392 298 53.0 7e-81 GNAYAYRWRNINGVDLRWEFLRPSQVQPYLLSDGSGMYYNVSFDEPEIGTKMYIPQSDMI HIRLASKNGGLTGVSPLKSLKPETQLKSASNKMALRALKQSVMVNGVLKIKHGGLLDWAT RASRSRKAKAQIDNSNGGPFVIDDLEDYQPLEVKSNIANLLKQVDWTGSQIAKVYGVPDS FINGQGDQQSSIAQISNQYVKALNRYVTPIVSELNNKLNIHIDKDLRPAIDVLGDNFATT ISSLKKDGTLAGNQARYVLQKSGFLPDDLPQPDLTAEMTAKGGDDNGNTGSQGNNRT Prediction of potential genes in microbial genomes Time: Wed May 25 06:46:07 2011 Seq name: gi|227861622|gb|ACKR01000187.1| Lactobacillus crispatus JV-V01 contig00203, whole genome shotgun sequence Length of sequence - 30862 bp Number of predicted genes - 45, with homology - 44 Number of transcription units - 21, operones - 7 average op.length - 4.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 281 350 ## COG4695 Phage-related protein 2 1 Op 2 . - CDS 284 - 496 136 ## gi|227878731|ref|ZP_03996642.1| hypothetical protein HMPREF0506_1643 3 1 Op 3 4/0.000 - CDS 489 - 2363 1566 ## COG4626 Phage terminase-like protein, large subunit - Prom 2485 - 2544 4.6 4 1 Op 4 3/0.000 - CDS 2762 - 3127 234 ## COG3747 Phage terminase, small subunit - Prom 3208 - 3267 4.3 5 1 Op 5 . - CDS 3344 - 3874 419 ## COG1403 Restriction endonuclease - Prom 4061 - 4120 6.8 - TRNA 4137 - 4206 24.5 # Pseudo CAT 0 0 - Term 4306 - 4350 0.0 6 2 Op 1 . - CDS 4440 - 4901 352 ## gi|227878737|ref|ZP_03996648.1| hypothetical protein HMPREF0506_1649 7 2 Op 2 . - CDS 4955 - 5197 277 ## gi|227878738|ref|ZP_03996649.1| hypothetical protein HMPREF0506_1650 8 2 Op 3 . - CDS 5203 - 5511 357 ## gi|256849980|ref|ZP_05555411.1| predicted protein 9 2 Op 4 . - CDS 5504 - 5800 220 ## gi|256849979|ref|ZP_05555410.1| predicted protein 10 2 Op 5 . - CDS 5769 - 6083 252 ## gi|227878741|ref|ZP_03996652.1| hypothetical protein HMPREF0506_1653 11 2 Op 6 . - CDS 6102 - 6323 155 ## gi|227878742|ref|ZP_03996653.1| hypothetical protein HMPREF0506_1654 12 2 Op 7 . - CDS 6323 - 7069 573 ## COG3645 Uncharacterized phage-encoded protein 13 2 Op 8 . - CDS 7079 - 7294 300 ## gi|227878744|ref|ZP_03996655.1| hypothetical protein HMPREF0506_1656 14 2 Op 9 . - CDS 7284 - 7541 207 ## gi|256849974|ref|ZP_05555405.1| predicted protein 15 2 Op 10 . - CDS 7516 - 7806 253 ## gi|262046781|ref|ZP_06019741.1| predicted protein 16 2 Op 11 . - CDS 7793 - 8047 350 ## gi|227878747|ref|ZP_03996658.1| hypothetical protein HMPREF0506_1659 17 2 Op 12 . - CDS 8040 - 8477 411 ## CLL_A2771 phage protein 18 2 Op 13 . - CDS 8458 - 8718 333 ## gi|227878749|ref|ZP_03996660.1| possible phage protein 19 2 Op 14 . - CDS 8733 - 9059 188 ## gi|227878750|ref|ZP_03996661.1| hypothetical protein HMPREF0506_1662 20 2 Op 15 . - CDS 9060 - 9356 372 ## gi|227878751|ref|ZP_03996662.1| hypothetical protein HMPREF0506_1663 21 2 Op 16 . - CDS 9343 - 10200 465 ## LJ0300 Lj965 prophage replication protein - Prom 10321 - 10380 3.5 22 3 Op 1 . - CDS 10527 - 10778 81 ## gi|227878754|ref|ZP_03996665.1| hypothetical protein HMPREF0506_1666 23 3 Op 2 . - CDS 10775 - 10906 116 ## - Prom 10958 - 11017 4.8 + Prom 10905 - 10964 7.1 24 4 Tu 1 . + CDS 11026 - 11532 356 ## gi|227878756|ref|ZP_03996667.1| conserved hypothetical protein + Term 11577 - 11612 1.3 + Prom 11927 - 11986 5.4 25 5 Tu 1 . + CDS 12011 - 12181 222 ## gi|256849964|ref|ZP_05555395.1| predicted protein + Term 12205 - 12240 3.4 26 6 Tu 1 . - CDS 12351 - 12575 190 ## gi|227878760|ref|ZP_03996671.1| Cro family protein phage protein - Prom 12595 - 12654 9.7 + Prom 12614 - 12673 5.3 27 7 Op 1 . + CDS 12708 - 13334 675 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) 28 7 Op 2 . + CDS 13347 - 13727 114 ## llmg_2131 hypothetical protein 29 8 Tu 1 . - CDS 13696 - 13911 101 ## gi|227878763|ref|ZP_03996674.1| hypothetical protein HMPREF0506_1675 + Prom 13840 - 13899 6.2 30 9 Tu 1 . + CDS 13983 - 14672 713 ## gi|256849958|ref|ZP_05555389.1| predicted protein + Term 14795 - 14842 13.6 + Prom 14704 - 14763 5.0 31 10 Tu 1 . + CDS 14845 - 15849 792 ## COG4823 Abortive infection bacteriophage resistance protein + Term 15996 - 16038 5.1 + Prom 15954 - 16013 3.2 32 11 Tu 1 . + CDS 16057 - 17280 841 ## COG0582 Integrase + Term 17416 - 17450 -0.9 33 12 Tu 1 . - CDS 17611 - 17778 155 ## LCRIS_01226 hypothetical protein - Term 18711 - 18766 -0.1 34 13 Tu 1 . - CDS 18842 - 19720 748 ## COG1284 Uncharacterized conserved protein - Prom 19758 - 19817 7.1 + Prom 19794 - 19853 5.4 35 14 Tu 1 . + CDS 19891 - 20538 753 ## LCRIS_01230 temperature-sensitive replication protein + Term 20543 - 20570 0.1 - Term 20529 - 20560 1.8 36 15 Op 1 13/0.000 - CDS 20564 - 21427 1046 ## COG0083 Homoserine kinase 37 15 Op 2 . - CDS 21441 - 22676 1191 ## COG0460 Homoserine dehydrogenase - Prom 22898 - 22957 4.5 + Prom 22557 - 22616 7.0 38 16 Op 1 4/0.000 + CDS 22788 - 24278 1511 ## COG0498 Threonine synthase 39 16 Op 2 . + CDS 24298 - 25665 1194 ## COG0527 Aspartokinases + Term 25695 - 25740 1.5 - Term 25676 - 25735 -0.5 40 17 Tu 1 . - CDS 25756 - 26316 478 ## COG0406 Fructose-2,6-bisphosphatase - Prom 26367 - 26426 8.8 + Prom 26378 - 26437 7.3 41 18 Tu 1 . + CDS 26488 - 28803 2030 ## LCRIS_01236 phospholipase D/transphosphatidylase + Term 28829 - 28875 6.6 - Term 28820 - 28860 4.4 42 19 Op 1 . - CDS 28861 - 29232 141 ## LJ1253 hypothetical protein 43 19 Op 2 . - CDS 29233 - 29799 520 ## LGAS_1064 XRE family transcriptional regulator - Prom 29827 - 29886 9.4 44 20 Tu 1 . + CDS 29877 - 30116 282 ## COG0698 Ribose 5-phosphate isomerase RpiB + Prom 30250 - 30309 3.7 45 21 Tu 1 . + CDS 30505 - 30862 183 ## LGAS_1066 GNAT family acetyltransferase Predicted protein(s) >gi|227861622|gb|ACKR01000187.1| GENE 1 2 - 281 350 93 aa, chain - ## HITS:1 COG:L35649 KEGG:ns NR:ns ## COG: L35649 COG4695 # Protein_GI_number: 15673379 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 18 93 29 104 392 68 47.0 4e-12 MPIFNQAPTNKSAISLNDDPGIWSALNKTEDEYVSADNALEYSDIYSLLSQLSGDLVLVK YKADKSRAQSLIDNPTGTTNGAAFWQSMFMQLL >gi|227861622|gb|ACKR01000187.1| GENE 2 284 - 496 136 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878731|ref|ZP_03996642.1| ## NR: gi|227878731|ref|ZP_03996642.1| hypothetical protein HMPREF0506_1643 [Lactobacillus crispatus JV-V01] # 15 70 15 70 70 90 100.0 4e-17 MIKLTKKVLKKLWLYSDIIAWILAMIFFCIAFFTINNTFGLFSIGISLVVLGYVFEFIGR SKGNSSKGGE >gi|227861622|gb|ACKR01000187.1| GENE 3 489 - 2363 1566 624 aa, chain - ## HITS:1 COG:L37002 KEGG:ns NR:ns ## COG: L37002 COG4626 # Protein_GI_number: 15673381 # Func_class: R General function prediction only # Function: Phage terminase-like protein, large subunit # Organism: Lactococcus lactis # 2 619 20 638 657 627 49.0 1e-179 MKIDLTQTHDVQGAFEAVNWTDIATKYTDRGTKYCFAVLHGPVMAPYKIKLACFRHLRDL QRQDQRDFPYHYDIAELDRFLKFAAIVPEAKSNKPVALTDSQVFIFSQLVAWKDKNNQKR YTRGILSMARHNGKSFLMGVYMAYTFLIASIGLKNQDYLISSINFKQTSKLMGYVKTTLS HIIQIEPFKSYAKECGIDPKSLSSQASQVRMRNSNNTIHAITYNSGSYDGFHFTLAIGDE FGKVADTQGVSDITTGQNGQDNHQFIQISTAYPDPSVPFHRDEVKAVEAMERDWDRTSGD NYLCLVWEQDSKEELFEPDKWVKSNPLIYCKPQMKKDLITDRGNALLTDSVDKFQNKSLN IWLEQSRDSFLKLDDVESAILEDFTIDNREVFIGFDYSMFSDNTAISFAFPYGDGKFHFM QHSFIPFQKAGSIEVKENQDGLPYRELAKKGYCDITEHPDGIINPEQVYKWLLQFVEEHH LQVVFFGYDRWGSFQVKQIVESLNVNTNWNIMDIQQTTLQLANPTKFLEEQFITHKATIN DDPIMKKALLNAVVKEDKVGIQIDKMKATLKIDVVDALIDALFQGMYYYDENADINSKET EVDRMTEQQVLDWFKNPNSGLGDD >gi|227861622|gb|ACKR01000187.1| GENE 4 2762 - 3127 234 121 aa, chain - ## HITS:1 COG:L38962 KEGG:ns NR:ns ## COG: L38962 COG3747 # Protein_GI_number: 15673382 # Func_class: L Replication, recombination and repair # Function: Phage terminase, small subunit # Organism: Lactococcus lactis # 4 119 36 150 157 95 41.0 2e-20 MANYLNKNPKVLRADEYLLQQYCSAYDVYRRAQQSLKDDGLQQKMFKTVVNPVTGEVINR DFAGYRKNPAYQMMSDSLSKLNSIGRELGLSPKARSEMIEYKAPDEKKQSITDSMKEFFK K >gi|227861622|gb|ACKR01000187.1| GENE 5 3344 - 3874 419 176 aa, chain - ## HITS:1 COG:L39564 KEGG:ns NR:ns ## COG: L39564 COG1403 # Protein_GI_number: 15673383 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Lactococcus lactis # 1 157 1 163 171 117 39.0 1e-26 MPRVRRCKYLGCHAFAVMPNHYCQTHISHEQEYLDRRNKYHESKQTRWKYNHVTRYRNST KAKQNKFYHTRVWKNLRKVVLQRDYHLCRYCLKGTGTIVDHIVPVEFDINQIDNVNNLVT CCRDCHAKKTRWEQKYYGTGLHNQIKPVPEITDIKTISKLMNVPDGYEKPLEQFNF >gi|227861622|gb|ACKR01000187.1| GENE 6 4440 - 4901 352 153 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878737|ref|ZP_03996648.1| ## NR: gi|227878737|ref|ZP_03996648.1| hypothetical protein HMPREF0506_1649 [Lactobacillus crispatus JV-V01] # 1 153 1 153 153 308 100.0 7e-83 MYYLKEFEHWDRKKTAANVQQFLTNDFPIIMSRADKQITDITSPQLNSIPSHTNGNSQEK KVLDHINYVAVFLCVADTYAHMSNDGRKYREIIKLLCLYKLDRNTVSNRLGIDTSTLDKR KVGALCEFANRFEVQKKRHEHQVDWIPNFRVPK >gi|227861622|gb|ACKR01000187.1| GENE 7 4955 - 5197 277 80 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878738|ref|ZP_03996649.1| ## NR: gi|227878738|ref|ZP_03996649.1| hypothetical protein HMPREF0506_1650 [Lactobacillus crispatus JV-V01] # 1 80 1 80 80 133 100.0 3e-30 MKINIDDLDIYQKTWNYGMQKIAASIIAAAYNLNSGDVPITKTDYHHLVFKGFNPMDMNE SFEIQLKIVPKISFKHSSHE >gi|227861622|gb|ACKR01000187.1| GENE 8 5203 - 5511 357 102 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256849980|ref|ZP_05555411.1| ## NR: gi|256849980|ref|ZP_05555411.1| predicted protein [Lactobacillus crispatus MV-1A-US] # 1 102 11 112 112 204 100.0 2e-51 MSNPVADGWKNYLHYFAKLGREVDQMKENIDIQVGTKKSKETWNKTYKSVFLANNGWKFY ELSGIRFCQYLATVQTKHGELVVHDGDSITYLGHNLWDVRKG >gi|227861622|gb|ACKR01000187.1| GENE 9 5504 - 5800 220 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256849979|ref|ZP_05555410.1| ## NR: gi|256849979|ref|ZP_05555410.1| predicted protein [Lactobacillus crispatus MV-1A-US] # 1 98 1 98 98 186 100.0 3e-46 MIWRITTLLNKKKWISFDKNGKSIYADSIVHDEEADEYFIPTEKNGLYGDEFLGDFYLLE PKKLTVISSHTSMDDLKRMMKKDKTSGAVYNVGGNFNV >gi|227861622|gb|ACKR01000187.1| GENE 10 5769 - 6083 252 104 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878741|ref|ZP_03996652.1| ## NR: gi|227878741|ref|ZP_03996652.1| hypothetical protein HMPREF0506_1653 [Lactobacillus crispatus JV-V01] # 1 104 1 104 104 159 100.0 7e-38 MALVVVYLEMMLWIVNHLNDIIFVVWTVLLAMNMYSNHKNEKSNQELLDEIHNSNDLNDK LLNTVKEYMQTTDKKATTQDNILWDSIIILAKRIHDLEDNYFVK >gi|227861622|gb|ACKR01000187.1| GENE 11 6102 - 6323 155 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878742|ref|ZP_03996653.1| ## NR: gi|227878742|ref|ZP_03996653.1| hypothetical protein HMPREF0506_1654 [Lactobacillus crispatus JV-V01] # 1 73 1 73 73 127 100.0 3e-28 MKPCDFCNFKNRDRQTYVIYYRKKNDPTHQRNFLFCYLNNKGELEIDGKDIEGHTDEPVN FCPNCRRDLNDED >gi|227861622|gb|ACKR01000187.1| GENE 12 6323 - 7069 573 248 aa, chain - ## HITS:1 COG:SPy0946_2 KEGG:ns NR:ns ## COG: SPy0946_2 COG3645 # Protein_GI_number: 15674964 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Streptococcus pyogenes M1 GAS # 131 237 17 123 127 155 69.0 8e-38 MTEELLKIQVKNDQQLVSARDLHRGLGLTTRFSKWVEQNFKDFELGEDYTSVTAVTVVGN GGHKPIQDYALTIDMAKQLCLMSHTDKGREYRKYLIEIERKWNDPQEIVRRGYAILQNEN TQLKIENHQMKPKALFADAVTASNRTILINDLAKILKQNGVQIGGVRLYRWLREHGYLIK RRGSDYNSPTQKSMERGLFRVKESVITHSDGHTTISKTSKVTGKGQIYFVNKFLNSDNPD TAQFREEK >gi|227861622|gb|ACKR01000187.1| GENE 13 7079 - 7294 300 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878744|ref|ZP_03996655.1| ## NR: gi|227878744|ref|ZP_03996655.1| hypothetical protein HMPREF0506_1656 [Lactobacillus crispatus JV-V01] # 1 71 1 71 71 121 100.0 1e-26 MKIKSIKINLNKERLDTVMKAMRAIEHENKAEFYKACDQIVADTGTSKDDVVFHILCSTY KNAISMLMAKG >gi|227861622|gb|ACKR01000187.1| GENE 14 7284 - 7541 207 85 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256849974|ref|ZP_05555405.1| ## NR: gi|256849974|ref|ZP_05555405.1| predicted protein [Lactobacillus crispatus MV-1A-US] # 1 85 1 85 85 171 98.0 1e-41 MMDQKKWNNRTPFIPGKSYIPAKLLAKYSAADLLKYGLRKWPDGTAVEINAGIFSHARLL VPMKQKITFQGPNWYIDVEGYTHED >gi|227861622|gb|ACKR01000187.1| GENE 15 7516 - 7806 253 96 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|262046781|ref|ZP_06019741.1| ## NR: gi|262046781|ref|ZP_06019741.1| predicted protein [Lactobacillus crispatus MV-3A-US] # 1 96 21 116 116 180 100.0 2e-44 MNQSDFVRLISLYRDAHVSFSYDRVKNTLQLITISFEDECDENYCEIIADWHTRSTTILR SSALEPDELLQVSYVMKLLVDFLYKGVVDDGSKEME >gi|227861622|gb|ACKR01000187.1| GENE 16 7793 - 8047 350 84 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878747|ref|ZP_03996658.1| ## NR: gi|227878747|ref|ZP_03996658.1| hypothetical protein HMPREF0506_1659 [Lactobacillus crispatus JV-V01] # 1 84 1 84 84 125 100.0 1e-27 MAKKIVWHGTFKNFKADAKGNVTLAFSGTGNNINWQWLNEFRQNGSVQLVITSDQTELDL DDNSDDSKQVELFDEKGEPKNESK >gi|227861622|gb|ACKR01000187.1| GENE 17 8040 - 8477 411 145 aa, chain - ## HITS:1 COG:no KEGG:CLL_A2771 NR:ns ## KEGG: CLL_A2771 # Name: not_defined # Def: phage protein # Organism: C.botulinum_B_Eklund # Pathway: not_defined # 8 143 68 204 206 99 42.0 5e-20 MTIRRSDGTFVKGSIPWNKGLHIDLSNGKGQFKKGTIPPQHHEVGYIAHHKDGYSFIKVA EPKKWQLYQRYVWEKAHRTKLSKDQIVIFLDGNKENFDPDNLAVVTRKELMILNHEKMLT ADKDLSKTGVLVAKLKMKIKEKENG >gi|227861622|gb|ACKR01000187.1| GENE 18 8458 - 8718 333 86 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878749|ref|ZP_03996660.1| ## NR: gi|227878749|ref|ZP_03996660.1| possible phage protein [Lactobacillus crispatus JV-V01] # 1 86 7 92 92 123 100.0 3e-27 MASNRLEDLNNMLFNQLVRLDKDDISDEEMNKEINRSKAMNGIAHTIVDNARVVLDAAKF MDNREDANSKLPHMIGVDAPDDNKKV >gi|227861622|gb|ACKR01000187.1| GENE 19 8733 - 9059 188 108 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878750|ref|ZP_03996661.1| ## NR: gi|227878750|ref|ZP_03996661.1| hypothetical protein HMPREF0506_1662 [Lactobacillus crispatus JV-V01] # 1 108 1 108 108 177 100.0 1e-43 MGKKEKATIKKILDSLQQADDMTMALDFIRSAILLVCTESATANDGHVVTDKEKKIVIGR MLMKALALFNDHEMPELLQSFNADEEDFSHDTHGKLLLKIIDAELDQM >gi|227861622|gb|ACKR01000187.1| GENE 20 9060 - 9356 372 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878751|ref|ZP_03996662.1| ## NR: gi|227878751|ref|ZP_03996662.1| hypothetical protein HMPREF0506_1663 [Lactobacillus crispatus JV-V01] # 1 98 1 98 98 188 100.0 1e-46 MQKINHEDEKISLARKKILVFLPAGITTTPAWLFAKFTTSSLARRGIRRVSPGLRTFNPD DQEKRGQVEYVIQQNKSDSVKRVNADTPISYQGWGRWS >gi|227861622|gb|ACKR01000187.1| GENE 21 9343 - 10200 465 285 aa, chain - ## HITS:1 COG:no KEGG:LJ0300 NR:ns ## KEGG: LJ0300 # Name: not_defined # Def: Lj965 prophage replication protein # Organism: L.johnsonii # Pathway: not_defined # 1 184 1 163 244 104 36.0 4e-21 MPKLKRVYDKSYMVISNHVFEDPNLTLKAKGLFGYLWSRPDDWNFFITELVRHFKGGRDQ AMSALDELEKAGYLLRSRVRNELGQLTNKSTWLLSDTPKKTWIEQKRKSAAKKKIVVKKQ VQKSASKKPVDKSTKPKSDFPTQAFPTLDNPTLLNTDLTKYSYNKILNNFIYTSSSSSST TQNQVNHEDEEEKITQTMSKLFESIRFYDKFYGTHNRPNLRQLRQIRTRVAQLQESNRDE LCKAYDERIRNLYVNSPIGYLITMLNQELKDQEIWNKEAATDAEN >gi|227861622|gb|ACKR01000187.1| GENE 22 10527 - 10778 81 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878754|ref|ZP_03996665.1| ## NR: gi|227878754|ref|ZP_03996665.1| hypothetical protein HMPREF0506_1666 [Lactobacillus crispatus JV-V01] # 1 83 1 83 83 152 100.0 7e-36 MMANGWKTPKQIQEDYNLADKTWATWRKQCEASPYADAIVRVSTRSTFIIEPLWQKFLIW QSKNFEEKHLDPHLRDLKVLKEN >gi|227861622|gb|ACKR01000187.1| GENE 23 10775 - 10906 116 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSDKELLEKMKKYIGRKLDQDSDPNAMKAIISEYMHLKGDDYR >gi|227861622|gb|ACKR01000187.1| GENE 24 11026 - 11532 356 168 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878756|ref|ZP_03996667.1| ## NR: gi|227878756|ref|ZP_03996667.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 168 1 168 168 306 100.0 3e-82 MTPYEIVSIAIATLAFALSLYSAINTYYEKHIKTRVYLRWTYELGQQLNICLLVSNMSSR PSTITNIYFTNEDETVESSWFPVKLISQTRFNNDKVFVFSDCTPLNIPPRSSKTFVISFQ NLRSTNIISDKMRFKFKIDNAQNIMEFHPKVVLDSEQINFALENRLYN >gi|227861622|gb|ACKR01000187.1| GENE 25 12011 - 12181 222 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256849964|ref|ZP_05555395.1| ## NR: gi|256849964|ref|ZP_05555395.1| predicted protein [Lactobacillus crispatus MV-1A-US] # 1 56 12 67 67 105 100.0 6e-22 MIDNEQRAHDLTLLILQNHWDDLEAYGVKIHAKPHVLDAYASLYPEILKWTKKQNF >gi|227861622|gb|ACKR01000187.1| GENE 26 12351 - 12575 190 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878760|ref|ZP_03996671.1| ## NR: gi|227878760|ref|ZP_03996671.1| Cro family protein phage protein [Lactobacillus crispatus JV-V01] # 1 74 1 74 74 125 100.0 7e-28 MSSNTKITLKAARVNAGLSQNEAAKSLSSYFGMPISRQRVASFESNPDKVPPAWAEGFSK IYNISLGDISFTHS >gi|227861622|gb|ACKR01000187.1| GENE 27 12708 - 13334 675 208 aa, chain + ## HITS:1 COG:MT2793 KEGG:ns NR:ns ## COG: MT2793 COG1974 # Protein_GI_number: 15842258 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Mycobacterium tuberculosis CDC1551 # 85 204 98 213 217 84 44.0 1e-16 MSAISENIKFYRSKNSLTQAQLADKLNVSEQAVYNWERGTRIPRMGYIEKMAKLFNIESP DILKVNKQPTNMKPLSQSGMHAVRIPIIGTIACGTPILAEQNIEGYTTELFNEKPDGTLF VLRCQGDSMEPKIPDGATVIVREQPTVEDDEIAAVLVDDNTEATLKRIKHVGKQVMLMPE NKKYDPILLNEENPGRILGKVIKVSYDL >gi|227861622|gb|ACKR01000187.1| GENE 28 13347 - 13727 114 126 aa, chain + ## HITS:1 COG:no KEGG:llmg_2131 NR:ns ## KEGG: llmg_2131 # Name: ps412 # Def: hypothetical protein # Organism: L.lactis_MG1363 # Pathway: not_defined # 1 126 35 158 159 103 38.0 2e-21 MRLNHDCVRDVLLFIEQEHRPGRFISLQQFLSADVLSDHYSADDIKYTLLQLLDAGFIQG KPTYTYNSLAMFSCGGLTWNGCQFIDTIRDNKVWHQTKIAASKLSSVSMTILSSIATKAL SKILGL >gi|227861622|gb|ACKR01000187.1| GENE 29 13696 - 13911 101 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878763|ref|ZP_03996674.1| ## NR: gi|227878763|ref|ZP_03996674.1| hypothetical protein HMPREF0506_1675 [Lactobacillus crispatus JV-V01] # 1 71 1 71 71 142 100.0 9e-33 MLKDIIYFTKEDGQNKLLMVSSITEGDAMALEHFDKADYEACTKILGHKPHNIYKFIDGI EFKVLRSWIKP >gi|227861622|gb|ACKR01000187.1| GENE 30 13983 - 14672 713 229 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256849958|ref|ZP_05555389.1| ## NR: gi|256849958|ref|ZP_05555389.1| predicted protein [Lactobacillus crispatus MV-1A-US] # 1 229 1 229 229 395 100.0 1e-109 MKKSIIAGLASVALMGAIGICSNTKQSTSPITPQTAEAAKLPKHFVYWLSPKKVIVTKNT KFNLIANNDSLSDNGVILTTKTLKKGRVVKIYHGVNGHQKWTFNPIPKDFAIPENVTKQY HWHEWLSKVSPNNTKWFVMYNKRNAKKYRKAIKKAKTAAKHHSKLKIATTPEKYDKRTLS ATEVAYFNNPNISISDKLSKANTYSGALRDEAYKYAMDQLHQAESGTPY >gi|227861622|gb|ACKR01000187.1| GENE 31 14845 - 15849 792 334 aa, chain + ## HITS:1 COG:lin2373 KEGG:ns NR:ns ## COG: lin2373 COG4823 # Protein_GI_number: 16801436 # Func_class: V Defense mechanisms # Function: Abortive infection bacteriophage resistance protein # Organism: Listeria innocua # 4 239 6 217 298 73 27.0 4e-13 MNPKPFKTIDQQISILKSRGLLIQNEEAAKNNLRRYGYYEIINGYKDYFLVGSEDNEADV FKPNVTFEHIFALFTLDRNLRTQVMSALEIFESNLRQAVAYTISEKYTELQDSYLKRSNY RTGKKQYYRSLGREAYPIDVLLDVLKRITHSNAEPFKHYRDKHGNIPPWIIVKKLNFGNL IWWYQLLKGDQKRNVISIMTGLEPTLIEQLPDFEKGYTSLLSLYLDYRNTAAHGGRIYNH FSKIHELPYNKVIHTLMEISPADYRNNKGKSRLGTLAKALNIADDKTAYNELRIGLGIYI NQYLELYPDEKNYLCDQMELSAEYLNKDFWKEQR >gi|227861622|gb|ACKR01000187.1| GENE 32 16057 - 17280 841 407 aa, chain + ## HITS:1 COG:SPy1488 KEGG:ns NR:ns ## COG: SPy1488 COG0582 # Protein_GI_number: 15675393 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Streptococcus pyogenes M1 GAS # 1 385 1 380 380 143 28.0 5e-34 MFIRKLKNGNYVFRESYKNPITNKWHETSCTFGKNNRETRKQAQIILDKRIRTKLIELES GETDITFAELKDKYLEIAQKQLAYNTYYRKKTTLNKISSEWGKDTIAKNVTPQFINKYLD NMLYGEHPYANATVNSYKSCIGVVYEMGIKYGYISNNPIDKVKISWKSESLKKREEIENK YLDDNELERILKDCDERKRPDLKEFFEWMYLTGMRCGEAAAIQKKNILQDKDGTWFARVR GSLITIRNEPDPSKRHIKTKNAKTYAGDRDVTLPPEAITIAKNHCEDKKANDFIFTNNWK TSEGYFNNSKLNKVLKSIMKRQKIKKKLVTHIFRHTHVSKLAEMGVPLYVIQQRVGHGDS RITRRIYLHITKKVKKDLANKLQNFSIENNINNSNVTNINQYKKISH >gi|227861622|gb|ACKR01000187.1| GENE 33 17611 - 17778 155 55 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01226 NR:ns ## KEGG: LCRIS_01226 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 55 1 55 55 66 96.0 3e-10 MAKYTEVNKKWNDKNEARKLYINKRSTTKNFILNLAIEDDLEQIEKDIEERRNNL >gi|227861622|gb|ACKR01000187.1| GENE 34 18842 - 19720 748 292 aa, chain - ## HITS:1 COG:SP2113 KEGG:ns NR:ns ## COG: SP2113 COG1284 # Protein_GI_number: 15901928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 10 288 32 310 313 261 45.0 2e-69 MDQLDKFNRRYNFLSKLSAAFFYSIAVAVALNFFWTPGHMYSSGITGFAQLINTVSERYL PFTLSTSMMYFLLNFPLFILAWFKIGHKFTFFTIVAVVLGSIMMHAIQPWQMHLDPLVCA IFGASINGIGTGMALKNGISTGGLDIIGIVIRQKTGISYGKFNIFINLIIIAAAGYMFGW PRALYSALTIFINGRVIDAVYTQHQKMQVMIVTQHPQHIIDGIQNRMHRGITILHDAEGA YSHIEKTVLITIIDRYDMYDIRQIVQGADPYAFMSVSEVEKVYGRFKEQEIV >gi|227861622|gb|ACKR01000187.1| GENE 35 19891 - 20538 753 215 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01230 NR:ns ## KEGG: LCRIS_01230 # Name: not_defined # Def: temperature-sensitive replication protein # Organism: L.crispatus # Pathway: not_defined # 1 215 1 215 215 408 96.0 1e-113 MSSYYELMWRDDELTSYTTDKLNFIYNAIDHPLSVRYRQLYPNRLDWQKAVNRHNAAIQK VKDLLIERKDSHNIREAWLKLHPNARTKANNGFTVEQLANKFPYMAKQLGAFMEIENIEI KYFDGEFKPRYDLDDFSDIFSANYPTSGFKQSGITQEALLKLYPNISAKNLDQILKMADC ELEQENGTEVIPYWYAVNAKRMLIDGDSFAATFDD >gi|227861622|gb|ACKR01000187.1| GENE 36 20564 - 21427 1046 287 aa, chain - ## HITS:1 COG:lin2689 KEGG:ns NR:ns ## COG: lin2689 COG0083 # Protein_GI_number: 16801750 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Listeria innocua # 1 287 1 288 288 246 45.0 4e-65 MIIKAPASTANLGPGFDSLGMAVSLYLEVEVLSLADRFQVDHVMKGIPHDEKNLIVKTAL TVYPGLPPLHLRVKSNIPLAHGLGSSSSAIAAGIELANQIGKLGLSDEEKVQLGAKIEGH PDNIAPTILGGLVVGAEVNHHFDAVEAPLPPYALVAYVPDYNLETKTARAVLPKELAFGV ATHGSAVANTLIASLFAQDYPKAGELMEQDVFHEVYREKLVPELVKVREVAHSKHALATY LSGAGSTIMTWIEDKHVAGFLSGLRKHDLKDETLILHPDEHGVQIIQ >gi|227861622|gb|ACKR01000187.1| GENE 37 21441 - 22676 1191 411 aa, chain - ## HITS:1 COG:SP1361 KEGG:ns NR:ns ## COG: SP1361 COG0460 # Protein_GI_number: 15901215 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 1 399 1 410 428 324 43.0 2e-88 MAIKIALLGLGTVGSGVLKIIKNNKKKIRQTSGEEIIIEKALVRNPEKHRNLANEVMLTT DFDSILQDPEIKIIVELIGGLHPAKEYITAAINAGKNVVTANKDLMATFGSELINLAASK KCDLMYDASVAGGIPILRTLATSYSSDIISEIQGIINGTTNYILSQMGEKGLSYEEALKN AQELGFAEADPTNDVTGKDAAYKIVILSKFAFGTKISIDDFTIQGINNLKDFDIKQAQKL GYVIKLIGIAKNINGKLFVEVAPCLLPENAIMAHIKNELNALQIKSQSLGTAVFTGPGAG SSATANSVMSDVITEIKNVVKKTTGQPFSNFSHVMQLTSSEDVKYSYYLSFEAEETLFDL SKLLSDLEIPVREIKQVQSRIVVVTENISRQQLQDLAIQDQYLKASYKILQ >gi|227861622|gb|ACKR01000187.1| GENE 38 22788 - 24278 1511 496 aa, chain + ## HITS:1 COG:L0092 KEGG:ns NR:ns ## COG: L0092 COG0498 # Protein_GI_number: 15674085 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Lactococcus lactis # 3 496 5 496 496 497 51.0 1e-140 MQYRSTRGSKENTLTAPQAIIQGLAQDGGLYVPVAFPQANFKLEDLSKLSYKQIAAMVIS LFFDDFTKEQITTAVQSAYSEQWDDRSIVPIEKHDNHFYMELFHGPTLAFKDIALQMLPQ LMTRAVQIEKIDKDIIILTATSGDTGTASMRGFANQKGTDVIVFYPEGGVSPVQLKQMLS QRGNNLRAIAIKGNFDDAQTEVKKIFNNDSFKNRLNANGYQFSSANSMNIGRLVPQISYY LYTYGQLVRRQEIKLGDEVNFAVPTGNFGDILAGYYAKKLGLPIKKLICASNENNVLTDF FNNGVYDKRRKFHLTNAPAMDILVSSNLERLLFDLYGENNYEVASLMNQLTQRGHYQVSG EVFTKLQKNFAAGFATEEEVKSEIKRVYNYDRYVIDPHTAVGSFVANQYQKKTGDQTPMV IVSTASPYKFPETVYEAITGGPSMQTGVGAIKELHDELGGQLSIGVRALFDREPKTEKII EPNDMEKEISSILDLK >gi|227861622|gb|ACKR01000187.1| GENE 39 24298 - 25665 1194 455 aa, chain + ## HITS:1 COG:BH1500 KEGG:ns NR:ns ## COG: BH1500 COG0527 # Protein_GI_number: 15614063 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Bacillus halodurans # 1 449 1 447 456 399 45.0 1e-111 MKVVKFGGSSLASGNSVDKALSIINADPERQVVVVSAPGKRTEDDIKVTDLMITYAYMSL RSNNYQDIATRIFKRYELIAQYFELPEAELEDINQLLLTLPKLSYPNNDYRMATFKAHGE RLNAILIAKILNHQGIKARFLEPKDVGLIVTGTSNNAEVNPETYVNLKRIKAAKDEKIIF PGFYGITPSGHIATFSRGGSDITGAILARGLNADLYENFTDVDAIFSANPHIVDQPKPIK RMTYQEMRELSYAGFSVFHDEALIPAIQGEIPVNVKNTNAPEKPGTMIVPEDGFIPKHTI TGIAGGKNFAALYLRKYMLNKGAGFTLKLMEILQKHHVSYEHMPSGIDDITIIFKKDVLT DQLIDVICNEIQTSLNPDQMQWIDDYAITMVVGEGMKDKLTLCASLLYPLGKKNISIQMI NQGASQISIMIGTRRQDEEVVIKTIYDNFIAQDKI >gi|227861622|gb|ACKR01000187.1| GENE 40 25756 - 26316 478 186 aa, chain - ## HITS:1 COG:L152977 KEGG:ns NR:ns ## COG: L152977 COG0406 # Protein_GI_number: 15673696 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Lactococcus lactis # 1 184 1 183 189 165 41.0 6e-41 MTTVYFVRHAQPDLSVHDDLTRPLTEKGLQDRKKVTDYFRDKHIDQAFSSPFKRAIDTIQ PVIDEKKLTLSSISDFRERKIGDEWISNFHEYCERQWEDFDYKLRNGESLKETQKRNVAA LKLVLSKYQDQTMIIGGHGTAIGSVINYYDPSFKYEAFAMIQPKNPFIVKMNFDGEKYLE YKVVTF >gi|227861622|gb|ACKR01000187.1| GENE 41 26488 - 28803 2030 771 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01236 NR:ns ## KEGG: LCRIS_01236 # Name: not_defined # Def: phospholipase D/transphosphatidylase # Organism: L.crispatus # Pathway: not_defined # 1 771 1 771 771 1432 97.0 0 MGLEILNHTDQKLISNADFWQLVDFQRESNKFSEFKGVSFVSNIKFIEQNLIPRFDQITL ILGLTDNGSNSIGKRIDQILNKRRDLIEYSYEHQDSPFTKRILDGSLQLFFTKQNLIHTK LYLMENQSKYSAFSGSMNLTDTAVNKNMEQLVWDYGNTSDPLFNCYQQMFQDNLNQATTY INAKKLSGYLEDKNKDDLRIHVMQDSSLEIKNSPNSTGKDIIILPAEEIKKYRDHYSKDD ELKKLSENEKLVASQTVTLFGEGGNKRRKLDTIGQDLYSLTQHIIRQDKKAKADTSQIEK EEDLFPVPVQFYNNGQLFQASKIGDNIPSEVITSDLTEGQLKNALQLFCDITHEYNTYKE VGEGWQACDFMLFLYESPWLWKIRNLYELSGSNVSREDVPIATALIGQGRTGKSTLGKRL AAKLIGAHNFLDSGMMDPKNYALGKSNINMTITNTLSDYVYTNGPVSPLMIDDVSPELTT RTYFERFIKEVTNNRNLTHPSPAFIFTMNRQESSIKSQFSLKPEIMRRLWYLSFESTFSG ESDQRNAALTSLFSRANDDLFKYCQVELAKFFTNVSVEDAQKIERDFLYPIKHVLKTALD KFDMYNQVSKYFEENYDYSLFVGRNDWGMLINQAKIGSDILFIKQDDRLKAQINKELFNK ISDQTAKNSGSTMLDRYFKYLPRKYHIASQQTSTGFIIDVENFDKWLDDDTLMNKYQNSS SFRDKQQRDNQAQLTQTVDMLAKAMLEDREQRRKEEAKKKRSWLGNFFHRN >gi|227861622|gb|ACKR01000187.1| GENE 42 28861 - 29232 141 123 aa, chain - ## HITS:1 COG:no KEGG:LJ1253 NR:ns ## KEGG: LJ1253 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 3 121 4 122 130 147 60.0 1e-34 MDKEQIIRNYFRAWLSPNLEVVQNTFDENAIYSECYGPVYRNKKEIISWFENWNKQGKVI AWPIERLIINGDTSIAEWHFKCNYQGKISEFDGVSIIEFNDQNKIISVKEYQSKSKHYYP YSK >gi|227861622|gb|ACKR01000187.1| GENE 43 29233 - 29799 520 188 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1064 NR:ns ## KEGG: LGAS_1064 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: L.gasseri # Pathway: not_defined # 48 188 12 152 152 162 58.0 5e-39 MKKIIVGTPVKLSHVLIGMIVVVLLSLFLTGFGYQAWWLFLIVLILGVFVTLPTCFNPYW QISSENITIINYDINDVIKLMQLLGLHKKSKQVINLSDVKKAAVVYRKNVRLSPIDFNPD YLNLILDLGKGTNMTLTLGNVDYQQLNSIMGLLQDKNIVVDDKQNILQLLRENKNLFNHF HKKGWTSL >gi|227861622|gb|ACKR01000187.1| GENE 44 29877 - 30116 282 79 aa, chain + ## HITS:1 COG:SP0319 KEGG:ns NR:ns ## COG: SP0319 COG0698 # Protein_GI_number: 15900251 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Streptococcus pneumoniae TIGR4 # 1 79 1 81 213 68 45.0 2e-12 MKIGIIQATSQKSKNFILEKYIKESVGSNDQVFNFGIYQDSSASLSYVQVSLAVALLINS KATDFIVTGCTSGQGMMLA >gi|227861622|gb|ACKR01000187.1| GENE 45 30505 - 30862 183 119 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1066 NR:ns ## KEGG: LGAS_1066 # Name: not_defined # Def: GNAT family acetyltransferase # Organism: L.gasseri # Pathway: not_defined # 1 119 5 123 242 113 49.0 2e-24 MTTKIEKISPKIYKVTDNDKHLGTISTYHNLFHNKYIYLKFNLSDYSVNIPFSKIVQAEH QALQVMIDSNENPIVDFLLRNGFICKRHCYTLTVNKKDLKIEINNKLSLHFFNTESPDY Prediction of potential genes in microbial genomes Time: Wed May 25 06:48:30 2011 Seq name: gi|227861619|gb|ACKR01000188.1| Lactobacillus crispatus JV-V01 contig00204, whole genome shotgun sequence Length of sequence - 1884 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 322 302 ## LCRIS_01238 ABC transporter, ATPase and permease components 2 1 Op 2 . - CDS 319 - 1647 995 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 1727 - 1786 6.7 Predicted protein(s) >gi|227861619|gb|ACKR01000188.1| GENE 1 1 - 322 302 107 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01238 NR:ns ## KEGG: LCRIS_01238 # Name: not_defined # Def: ABC transporter, ATPase and permease components # Organism: L.crispatus # Pathway: not_defined # 1 107 1 107 527 210 99.0 2e-53 MNLKAFIKTNPVRFWLTAIGWIIIPALSITNTYVVQEETNILLSRNWTKFILINVLAFLI MLVDYGVSALVDYQQQAQVQDLNDQVRDKIVKRYYYDGKKHTVAQMH >gi|227861619|gb|ACKR01000188.1| GENE 2 319 - 1647 995 442 aa, chain - ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 14 419 103 513 535 131 24.0 2e-30 MHHYYYEKSDEKVSSMQNRLTANLKILSDDYATPWITILSGVLEIVIAIVLLASMNWILI LVTAILAVITLFAPKIMEKKTSAATDKVNKKNEKLLNTIAHWLGGLQELRRYSAYSRLVK QIHRSSSDYVDASKGSAKLRSVSYLINAFSNSIAQIGMSFIAGIMFLLNMISFGDFAVAS GFAFTIFSAIWNITQSLTQVKSTKALREQITDLRKQVPDENKDKVSAYGLKVSGLSVKYD QGETIFYPDFTIKKGQKVLLTGDSGTGKSTLFNVLLGKLKPESGTVTYLDENETIIPEGK ARIGNMPQNPVVFPATIKENITMFNENLQDKLQDVVQAVQLQSDLAKMPDGVNTTIDLKS ENLSGGQRQKVVLARTEIHEQSFVLMDEVTSAIDQKATEKIIDELLKTDQTILMIAHNFT PELKAKFDQEIKLKSKKGDKVR Prediction of potential genes in microbial genomes Time: Wed May 25 06:48:36 2011 Seq name: gi|227861604|gb|ACKR01000189.1| Lactobacillus crispatus JV-V01 contig00205, whole genome shotgun sequence Length of sequence - 12158 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 6, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 152 - 199 11.3 1 1 Tu 1 . - CDS 215 - 1255 1187 ## LCRIS_01240 hypothetical protein - Prom 1354 - 1413 6.2 - Term 1764 - 1806 6.5 2 2 Op 1 . - CDS 1825 - 2487 808 ## COG1359 Uncharacterized conserved protein - Prom 2512 - 2571 7.2 - Term 2541 - 2576 4.4 3 2 Op 2 . - CDS 2583 - 3122 464 ## LCRIS_01242 hypothetical protein - Prom 3160 - 3219 5.9 4 3 Op 1 . - CDS 3221 - 3826 431 ## LCRIS_01243 transcriptional regulator 5 3 Op 2 . - CDS 3828 - 3989 188 ## LCRIS_01244 hypothetical protein 6 3 Op 3 . - CDS 4005 - 5207 1172 ## COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases - Term 5245 - 5284 6.1 7 4 Op 1 . - CDS 5287 - 5823 468 ## COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) 8 4 Op 2 . - CDS 5837 - 6688 729 ## COG0078 Ornithine carbamoyltransferase 9 4 Op 3 7/0.000 - CDS 6700 - 7131 468 ## COG0078 Ornithine carbamoyltransferase 10 4 Op 4 . - CDS 7142 - 8371 968 ## PROTEIN SUPPORTED gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 11 4 Op 5 . - CDS 8445 - 9293 769 ## COG0583 Transcriptional regulator - Prom 9321 - 9380 4.5 + Prom 9285 - 9344 8.2 12 5 Tu 1 . + CDS 9422 - 11722 2341 ## COG0474 Cation transport ATPase + Term 11725 - 11769 5.1 - Term 11706 - 11761 12.2 13 6 Tu 1 . - CDS 11763 - 12077 216 ## LCRIS_01254 putative protein without homology - Prom 12097 - 12156 5.5 Predicted protein(s) >gi|227861604|gb|ACKR01000189.1| GENE 1 215 - 1255 1187 346 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01240 NR:ns ## KEGG: LCRIS_01240 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 346 1 345 345 411 96.0 1e-113 MPGIVEQTLLEQQNIDLNEMVTMNQMIDQLLPNASKELQQKLKIKIYNFVRTRKQPSITV RRRKYFKPAVAKLIIGNVQDYADAIERRAKEAPAKEDATDKRPASKSKRVKTITKRKILA KVIKNDKIDKSIQKKLEDKIASIVKTNFIKPVNKRGSFSVEDGEKVIAELSPFYQNIKID QKYRKNAEKAAENKETETKEKPEQHSKDQNESREGQSKDFERKNNQKNSNNRNNNNQTQN QRKRQNKHPFEIRRENNNRSRNNQSNRRYNNRNNYDNRNNYEFDEASGLRERYNTVIRNY NQLEQRYNALQDKYNQALDDKARLIEEMGKKNEDLRRVLIDVLRKM >gi|227861604|gb|ACKR01000189.1| GENE 2 1825 - 2487 808 220 aa, chain - ## HITS:1 COG:FN1347 KEGG:ns NR:ns ## COG: FN1347 COG1359 # Protein_GI_number: 19704682 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 7 219 5 215 218 70 26.0 2e-12 MKLKQTPILRLYKLETNKEDHAKFVKAGQHNMLTSQENEPGTLFMQTSHDEETTNFVVEC YQDEASYDTHANSKQFKDFTDVAKDILTSRVKVELFPEFISTKAEKLAVTGSNDYVIYLT EIGVSLGKGDEFAHAVMKEMKTAVEEEKDILAMIAGTVADQPNEWLAIEVYRNNEAYKQH LETKNFKEYLNNTKYCVESKSLRKLQPDVIVDQGAIFYQP >gi|227861604|gb|ACKR01000189.1| GENE 3 2583 - 3122 464 179 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01242 NR:ns ## KEGG: LCRIS_01242 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 179 4 182 182 314 99.0 1e-84 MLKRTLLPLTSMVLVLGLTGLASQVETVDASTYGNGVQVTIPKKMQGTWYSYDRNAHNGT KITFTEHTVNGKPIFTQEASTISDYFNGRIANQKNFDKVTQNWMSGKTTKMKNDTFYEID PWITFENWSLYRVVPQTINGKKHNVLVYSSRYDGGNYFRSKKLAKKMKDYKFKKVNYTL >gi|227861604|gb|ACKR01000189.1| GENE 4 3221 - 3826 431 201 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01243 NR:ns ## KEGG: LCRIS_01243 # Name: not_defined # Def: transcriptional regulator # Organism: L.crispatus # Pathway: not_defined # 1 201 5 205 205 367 99.0 1e-100 MTELKIAYFDQLGRKELDQAVQHFVLKHPNVDVKLLATSHDGAFAKLNEDEADIAINDLR DENLNFDETELTQAGVMAILPKGMYPNGIQMIEKDELNDMTCFIVAKPEEEVSELHLFKD LYQIGSQFIASNSVEEAALLVASRSGYFILNENTARLINTTDLQPLFLLDHGQLIKQKIM AFYKSNSALSSEFIKLLQQEY >gi|227861604|gb|ACKR01000189.1| GENE 5 3828 - 3989 188 53 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01244 NR:ns ## KEGG: LCRIS_01244 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 53 1 53 53 90 100.0 2e-17 MSKEKKLNLIKLFGIVVSGLNLIFFALMALNKHEDTKDKRRVAEEGHAPLDEK >gi|227861604|gb|ACKR01000189.1| GENE 6 4005 - 5207 1172 400 aa, chain - ## HITS:1 COG:L174946 KEGG:ns NR:ns ## COG: L174946 COG4552 # Protein_GI_number: 15672154 # Func_class: R General function prediction only # Function: Predicted acetyltransferase involved in intracellular survival and related acetyltransferases # Organism: Lactococcus lactis # 15 328 1 317 350 141 27.0 2e-33 MNKFIDVRIGISMELKKNKNNLKQITALIQYAFLKNNDLTKDENFMSRYDHSTGYGYFDK EKLASYIMVNRFKSDVFGHHLPMAGIGYVASYPEYRGQGHISQLMKEILHDLHRQDIPFA NLAPFSESFYRQYGFSNSIYQKEYRFDGSALRSFKLPRSGHIVRGKWDNLAVQNGVIQLY ERQLHTDDERNTVVREAWWWNRLDSYYHHRNVAVYFDADERPISYLIYRIRDNTFLADEM YAITPQGLLSMFGFMGSHAGSVKQFKMSVPEKSLRAELFPEQNELQVDLRPYMMSRIIDF EKVLACMRPMQEGDFNLEVNSDEQCPWNIGVWQLSNHGRKVAVERKEDALVDFSGSITAW TQVLLGRLTMNAAVKLGLITDYRIKKLDFVKGDVSFYDYF >gi|227861604|gb|ACKR01000189.1| GENE 7 5287 - 5823 468 178 aa, chain - ## HITS:1 COG:SPy1190 KEGG:ns NR:ns ## COG: SPy1190 COG3697 # Protein_GI_number: 15675159 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) # Organism: Streptococcus pyogenes M1 GAS # 2 176 4 178 192 110 34.0 1e-24 MNIFNEGKKQDIAQVLAAKDRRVAVQHKIFNKYPNQTLVDINMNIPGPIKNNRYLTKMFM LGINELENAWTNLGYHFKLVTQLNDDSGCENFYVLSLSIEKVKRSTIDFENQISLGRLFD ADVLVKNKQAAISRRDLGRQPRKCFLCDRPAKECARSRRHSVEQMQAFISQLYQEYVA >gi|227861604|gb|ACKR01000189.1| GENE 8 5837 - 6688 729 283 aa, chain - ## HITS:1 COG:L0109 KEGG:ns NR:ns ## COG: L0109 COG0078 # Protein_GI_number: 15674018 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Lactococcus lactis # 1 159 188 347 354 227 68.0 2e-59 MLGVNVHIVTPKPLFTHPDVQKIAQNFAQDSGSKNLITDDIAQGVKGANVVYTDVWVSMG ENDWSERIKLLKPYTVTMKMMQMTGTPDDQLIFMHCLTAFHDRTTQVGEEIYEKYGLNEM EVTDEVFNSKYAWQFTEAENRLHSIKAVMAATLGNLFIPIACGGGGILVIVKDGHLRGVA GVIHKDFSAAKMAEDINADELVILTTVDHAFLNYGKENQQAIGKIKVEQLKQYLAAGYFA AGSMKPKIEAAIEFVEKTGNLAIITSLSNANKLADGVGTIIYN >gi|227861604|gb|ACKR01000189.1| GENE 9 6700 - 7131 468 143 aa, chain - ## HITS:1 COG:L0109 KEGG:ns NR:ns ## COG: L0109 COG0078 # Protein_GI_number: 15674018 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Lactococcus lactis # 4 130 11 137 354 194 70.0 4e-50 MKYLQNVFQGRSFLDCKDYTPAEISYLIDFALHLKELKKEHIPHEYLKGKNIALLFEKAS TRTRSAFVVACNDLGAHPEYLGASEIHLGKKESVKDTAKVLGSMYDGIEYRGFAQEDVEE LAKYSGVPVWKWVMAAIMLPTVF >gi|227861604|gb|ACKR01000189.1| GENE 10 7142 - 8371 968 409 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 [Streptococcus pneumoniae SP23-BS72] # 2 409 3 409 409 377 49 1e-104 MSSPIHVYSEIGKLKTVMLHRPGKELENLAPDILHRMLIDDIPYLKIAQEEHDAFAHVLR QQGIKVLYLEDLLAESLTDEKVRRAFLDQLLDESSIKKQDPLHQLLLNYLQELLTKEMVK TVIAGIRKSAIHNSTPSLADLAEDPDYPFYLDPMPNVYFTRDQQAAIGSGMTINRMTFRA RRRESLFMETILKNHPDFKNATIPVWRDRYHHGRLEGGDELVLNNHVLAVGISQRTSATA ITDLAHNLFDHSSYDTILAIKIPHNHAMMHLDTVFTMINYNQFTVHPFILDKAGKIDIYV LQPDDHNGVKITEKNDLVQVLKENLHLSELDLIPTGGGDPIAAPREQWNDGSNTLAIAPG EVVTYDRNYVSNDLLRKHGIIVHEIRSSELSRGRGGPRCMSCPLIREDL >gi|227861604|gb|ACKR01000189.1| GENE 11 8445 - 9293 769 282 aa, chain - ## HITS:1 COG:CAC2394 KEGG:ns NR:ns ## COG: CAC2394 COG0583 # Protein_GI_number: 15895660 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 1 276 1 278 286 202 39.0 5e-52 MNLKQLRYFLVVAEEKQITAAAKRLYIAQPPLSYQLKQLEKELGAQLFKRTAHGIELTDV GQIFQSYANEIISLAQNAENQVHKTISGELGTIAIGMASSSTGLIPMNSFNELRKYYPEI SFDIYEDNTYGILDKLEKKTIDLGIVRTPYNQTGLNTKTLTTEKMMAISVDPDFQPKKEL RIKDLADQPLIIYRRFEDIFNQTFAHHGLKPFYAVKCDDSRTAITWAKRKMGVALVPESI ATTYAQENMIAIKHANWITHLQLVWRKDHQVTPLMKKIIAAI >gi|227861604|gb|ACKR01000189.1| GENE 12 9422 - 11722 2341 766 aa, chain + ## HITS:1 COG:Ta1045 KEGG:ns NR:ns ## COG: Ta1045 COG0474 # Protein_GI_number: 16082076 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Thermoplasma acidophilum # 7 749 21 770 780 388 33.0 1e-107 MSDKFHGLTQAEADKRLKEDGLNEVPEPEYNFFKEFLSKLWNLSAWILEAALILECILGK WVQSLFVLLMLLFAAFNGASKKKQSRRVLNNISHKLTPTVSVERDGKWIKLDSKQLVKGD LISLKRGDVLAADVKIVDGNLACDESSITGESKPVKKAIDDTAFAGTTVVEGDGLAVVTA TGKDSRSGKTINLINNSAAPGHLQQLLTKIIYYLCLLDGVLTLVIIIASFFKGGNFNTFI NMLPFLAMMFIASIPVAMPSTFALSNSFEATRLSKEGVLTSDLTGIQDAANLNLLLLDKT GTITENKTAVAAWTDLSDLPDKDVLALAGAATDKRNAGIIDTAIDEYLVENNIPVMNAEN FTPFTSDTGYSMADVAGHNVKLGSFKQLSLIDKHADEEISGINFKAGRSVAVLIDDKLAG VFILQDKVRTDSKAALAELKKRGVRPIMLTGDNQKTAAAVAEQVDLTGKVISIHDFNENT DINDLAGIADVLPEDKLKMVKLFQEKGYIVGMTGDGVNDAPALKQAEVGIAVSNAADVAK RSGKMVLLDDGLGSIVKILDAGHRVYQRMTTWSLTKLARTAELTMLLTFGYLFFDYIPMA LNAMVIYTIMNNMVTMMIGTDRTHITYKPENWNMAKLAKIAFSLAAGWTLIGIGFVWFLN THGWSHGAVSTMVYVYLVLSAMLIVLITRTRKYFWQDYPSKLVGSVQIADVLLTFILALC GWAMVQISIQNLAITVIVAIIAAIIIDLIYQPVMKNRYIITINFIN >gi|227861604|gb|ACKR01000189.1| GENE 13 11763 - 12077 216 104 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01254 NR:ns ## KEGG: LCRIS_01254 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 104 1 104 104 170 97.0 2e-41 MKRCKNWVVTIVAFLMLVGEISVLPANLQGSTSVVNAAIHHRRRKHQYRDKTKIYTSNYR IVDNKRSKIFHVMRGHNYRMNRENAVFFKSKAAARAAGYRESKR Prediction of potential genes in microbial genomes Time: Wed May 25 06:48:51 2011 Seq name: gi|227861600|gb|ACKR01000190.1| Lactobacillus crispatus JV-V01 contig00206, whole genome shotgun sequence Length of sequence - 1883 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 11 - 340 413 ## COG0670 Integral membrane protein, interacts with FtsH 2 1 Op 2 . - CDS 364 - 555 89 ## gi|227878802|ref|ZP_03996710.1| hypothetical protein HMPREF0506_1711 - Prom 619 - 678 4.7 + Prom 701 - 760 5.2 3 2 Tu 1 . + CDS 788 - 1882 993 ## COG3589 Uncharacterized conserved protein Predicted protein(s) >gi|227861600|gb|ACKR01000190.1| GENE 1 11 - 340 413 109 aa, chain - ## HITS:1 COG:SP1972 KEGG:ns NR:ns ## COG: SP1972 COG0670 # Protein_GI_number: 15901795 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Streptococcus pneumoniae TIGR4 # 1 107 130 235 235 84 48.0 6e-17 MAILGTITKKDLSRIGSYASAALIGLIVAMLANLFLHNPIIDYVFSIIAVIIFTILTAWD AQRMKDIYLQYGDDLSTNGLAVLGALQLYLDFVNLFLQFLDIFGANEDK >gi|227861600|gb|ACKR01000190.1| GENE 2 364 - 555 89 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878802|ref|ZP_03996710.1| ## NR: gi|227878802|ref|ZP_03996710.1| hypothetical protein HMPREF0506_1711 [Lactobacillus crispatus JV-V01] # 1 63 1 63 63 73 100.0 3e-12 MFFSKIYGYMALAVFVSAISAYLTMTVFAGPISAFIAQHQLFTALPLLLLQVHIVDKILL QHL >gi|227861600|gb|ACKR01000190.1| GENE 3 788 - 1882 993 364 aa, chain + ## HITS:1 COG:L176316 KEGG:ns NR:ns ## COG: L176316 COG3589 # Protein_GI_number: 15672155 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 3 364 1 363 364 352 48.0 8e-97 MTMRSLGLSIYPGHSKFEGNAHYLDLAHKYGFSRIFMSMLEVQGSPEETKAKYKKIIEYG NKLGFQTFLDVNPAIFKQLGVSYDDLKFFADIGAAGIRLDTTFDGAIEAMLSYNPYGLII ELNMSNNVDYLNNIISYQANTPFIYGCHNFYPQRGTGLPYDFFIACSERFKKFGIHSAAF VSSQVGQMGPWNVEDGLPTLEQDRNLPIDVQAMHLWASGLIDDVIIGNAYASEAELKALS KVNRYQLMLHVNYVTDVNKIEKTIVEAPQHFRRGDITKDVIRSTMPRVTYADIPNPVHDN NVEFQRGDIIIGNDNFGHYKNELQIVLEPHKESRMNKVGSIRSDELFLLDFIKPWSKFKL IGNK Prediction of potential genes in microbial genomes Time: Wed May 25 06:49:13 2011 Seq name: gi|227861552|gb|ACKR01000191.1| Lactobacillus crispatus JV-V01 contig00207, whole genome shotgun sequence Length of sequence - 51165 bp Number of predicted genes - 46, with homology - 46 Number of transcription units - 15, operones - 11 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 7/0.000 - CDS 36 - 563 681 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 607 - 666 1.8 2 1 Op 2 . - CDS 668 - 2941 2165 ## COG0608 Single-stranded DNA-specific exonuclease - Prom 2998 - 3057 4.3 3 2 Op 1 . - CDS 3065 - 3751 690 ## COG3764 Sortase (surface protein transpeptidase) 4 2 Op 2 . - CDS 3754 - 5592 2039 ## COG0481 Membrane GTPase LepA - Prom 5614 - 5673 8.7 - Term 5761 - 5798 1.5 5 3 Op 1 31/0.000 - CDS 5809 - 6960 1549 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain - Prom 6980 - 7039 1.8 - Term 6975 - 7018 7.5 6 3 Op 2 29/0.000 - CDS 7043 - 8896 2582 ## COG0443 Molecular chaperone 7 3 Op 3 21/0.000 - CDS 8913 - 9497 584 ## COG0576 Molecular chaperone GrpE (heat shock protein) 8 3 Op 4 . - CDS 9510 - 10559 915 ## COG1420 Transcriptional regulator of heat shock gene - Prom 10606 - 10665 6.6 - Term 10653 - 10690 4.1 9 4 Op 1 12/0.000 - CDS 10696 - 11646 538 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 10 4 Op 2 26/0.000 - CDS 11652 - 12545 870 ## COG0130 Pseudouridine synthase - Term 12562 - 12596 4.2 11 4 Op 3 32/0.000 - CDS 12601 - 12966 519 ## COG0858 Ribosome-binding factor A 12 4 Op 4 10/0.000 - CDS 12986 - 15589 2973 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 13 4 Op 5 8/0.000 - CDS 15594 - 15905 498 ## PROTEIN SUPPORTED gi|227878817|ref|ZP_03996724.1| ribosomal protein L7/L12 14 4 Op 6 22/0.000 - CDS 15908 - 16183 400 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 15 4 Op 7 32/0.000 - CDS 16213 - 17406 712 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 16 4 Op 8 4/0.000 - CDS 17426 - 17902 504 ## COG0779 Uncharacterized protein conserved in bacteria - Prom 17941 - 18000 1.9 - Term 17911 - 17946 5.1 17 4 Op 9 5/0.000 - CDS 18013 - 22323 3684 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) 18 4 Op 10 7/0.000 - CDS 22329 - 24026 2017 ## COG0442 Prolyl-tRNA synthetase 19 4 Op 11 12/0.000 - CDS 24054 - 25310 1329 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 20 4 Op 12 32/0.000 - CDS 25323 - 26138 741 ## COG0575 CDP-diglyceride synthetase 21 4 Op 13 19/0.000 - CDS 26141 - 26875 622 ## COG0020 Undecaprenyl pyrophosphate synthase 22 4 Op 14 33/0.000 - CDS 26878 - 27435 698 ## COG0233 Ribosome recycling factor 23 4 Op 15 24/0.000 - CDS 27435 - 28160 1103 ## COG0528 Uridylate kinase - Prom 28180 - 28239 6.9 - Term 28239 - 28282 7.9 24 5 Op 1 38/0.000 - CDS 28305 - 29330 461 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts 25 5 Op 2 . - CDS 29364 - 30137 1318 ## PROTEIN SUPPORTED gi|227878829|ref|ZP_03996736.1| ribosomal protein S2 - Prom 30232 - 30291 2.5 26 6 Tu 1 . - CDS 30302 - 31333 1030 ## COG4123 Predicted O-methyltransferase - Prom 31360 - 31419 8.2 + Prom 31319 - 31378 9.2 27 7 Op 1 . + CDS 31407 - 32021 454 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Prom 32046 - 32105 5.7 28 7 Op 2 . + CDS 32158 - 33303 1248 ## COG2230 Cyclopropane fatty acid synthase and related methyltransferases + Term 33318 - 33359 1.1 - Term 33299 - 33355 6.4 29 8 Op 1 . - CDS 33363 - 35306 1926 ## COG3590 Predicted metalloendopeptidase - Prom 35340 - 35399 8.0 - Term 35354 - 35390 -0.6 30 8 Op 2 35/0.000 - CDS 35401 - 37200 206 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 31 8 Op 3 . - CDS 37193 - 38959 224 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P - Term 38967 - 39021 12.6 32 9 Op 1 . - CDS 39038 - 39256 302 ## lhv_1362 hypothetical protein 33 9 Op 2 . - CDS 39323 - 39589 387 ## LCRIS_01293 hypothetical UPF0291 protein - Prom 39640 - 39699 9.1 + Prom 39581 - 39640 5.3 34 10 Tu 1 . + CDS 39746 - 40372 704 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) + Term 40383 - 40417 5.5 35 11 Op 1 8/0.000 - CDS 40741 - 42033 992 ## COG0675 Transposase and inactivated derivatives 36 11 Op 2 . - CDS 42068 - 42670 593 ## COG2452 Predicted site-specific integrase-resolvase - Prom 42695 - 42754 4.3 - Term 42673 - 42707 2.1 37 12 Op 1 . - CDS 42756 - 43403 567 ## LCRIS_01295 acyl-CoA thioesterase 38 12 Op 2 . - CDS 43396 - 44055 578 ## COG1573 Uracil-DNA glycosylase - Prom 44303 - 44362 7.0 - Term 44329 - 44370 3.1 39 13 Tu 1 . - CDS 44405 - 45529 905 ## LCRIS_01297 putative protein without homology - Prom 45560 - 45619 5.5 - Term 45586 - 45618 4.0 40 14 Op 1 33/0.000 - CDS 45641 - 46018 633 ## PROTEIN SUPPORTED gi|227878845|ref|ZP_03996752.1| 50S ribosomal protein L19 - Term 46039 - 46081 3.4 41 14 Op 2 30/0.000 - CDS 46102 - 46821 864 ## COG0336 tRNA-(guanine-N1)-methyltransferase 42 14 Op 3 12/0.000 - CDS 46811 - 47326 169 ## PROTEIN SUPPORTED gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 - Term 47338 - 47376 1.5 43 14 Op 4 23/0.000 - CDS 47393 - 47665 467 ## PROTEIN SUPPORTED gi|58337565|ref|YP_194150.1| 30S ribosomal protein S16 - Prom 47692 - 47751 6.0 44 14 Op 5 8/0.000 - CDS 47753 - 49183 1660 ## COG0541 Signal recognition particle GTPase 45 14 Op 6 . - CDS 49187 - 49528 269 ## COG2739 Uncharacterized protein conserved in bacteria - Prom 49667 - 49726 10.2 + Prom 49610 - 49669 12.7 46 15 Tu 1 . + CDS 49719 - 51131 1768 ## COG0531 Amino acid transporters Predicted protein(s) >gi|227861552|gb|ACKR01000191.1| GENE 1 36 - 563 681 175 aa, chain - ## HITS:1 COG:FN1483 KEGG:ns NR:ns ## COG: FN1483 COG0503 # Protein_GI_number: 19704815 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Fusobacterium nucleatum # 3 172 1 170 170 209 57.0 3e-54 MAVDFSKYIASVKDFPNKGIVFRDITPILQDGELYRAATHELAEYAKSKKADVIVGPEAR GFIVGCPVATELGLGFVPARKPHKLPREVERASYDLEYGSNSLEMHKDAIKPGQRVVVCD DLMATAGTLRASKELIENLGGKLVGAAFYIELPDLHGRDKLPDVDIYSLVQYHGA >gi|227861552|gb|ACKR01000191.1| GENE 2 668 - 2941 2165 757 aa, chain - ## HITS:1 COG:L0259_1 KEGG:ns NR:ns ## COG: L0259_1 COG0608 # Protein_GI_number: 15672614 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Lactococcus lactis # 15 544 22 549 558 387 38.0 1e-107 MKWQERTADELAPDLIEKYQLGPIAAKLFALRGINTDEKLDFWFNATEENLADPALMHDM DKAINRINQAIDSGEKITIYGDYDADGITATTIMTETLSILGADVHYFIPNRFNDGYGPN MDRYQDIVADGTRLIITVDNGVTGVEEVKYAQEHNVDVIITDHHTFQEKKPAAYATVHCN YPGQKYPFDDYCGAGVAYTICRGLMQDTMPELLDLAMIGTIGDMVKVTGEGHIIVKRGLE MLNQTDRPGLRALIKNAGLTLGSINETDVGFNIAPRLNAVGRLDNANLAVELLLSDDDLE AQKIADKIEELNNKRKELTTEVYDKCMTLIHKNSWQKQNTLVLYDPEFHEGVLGLVANKI VEKTHKPTIVLTKNDAGEVKGSGRSFAGFNLFDALNPIKDQYLTKFGGHDFACGLSLEEN QIAPLREKFEDDFHVEGGLETKKYDMELPMQGLTPQTLAQINQVGPFWTGDTQPIFSISN PTITHFFKMGKDKNHVKFTVAKKGGNLSVIGFNKGFLNNNLLPFISQIFVQLSLNTYRNQ VSLQGIMTGLAFASPKLAVPTPVVDLRQEKYVMGFADRYLLFDQKNIPIVRNRLQIDEDK ISLVKDYDQTGETVALLDVPRNQIELNAALEKDYQQIYLRFLLDQLPVEQIPAKNYFGAV LKYIYSHPTLKPADYRTVAPYLGLDYDSVLFILRVFFELGFVKLDEGKLVGEPSPKKQPL TASKYLMGTSSQIKFVNQLRTMPSQRLITYVNNLTNK >gi|227861552|gb|ACKR01000191.1| GENE 3 3065 - 3751 690 228 aa, chain - ## HITS:1 COG:L125196 KEGG:ns NR:ns ## COG: L125196 COG3764 # Protein_GI_number: 15673095 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Lactococcus lactis # 3 228 44 280 287 130 36.0 2e-30 MAKNKKNSVSTILLRVAAIILLLVGIALIFNKQISDQLIHHNQQSTLSGINRKTIEENKK KKGMYDFSKVKSLGITQAARSQVKKTSGAIGALAIPDVNMYLPIMLGMSDDAMSTGGGTM RADQVMGKGNYPLAGHYMTAKGILFSPLEDVKKGELVYLTNLNKVYVYRIYMKKIVDPTA VWLVDNTKKNIVTLITCADGGKNRWAIRGNLIKTEKANNNNLKVFKLK >gi|227861552|gb|ACKR01000191.1| GENE 4 3754 - 5592 2039 612 aa, chain - ## HITS:1 COG:L0159 KEGG:ns NR:ns ## COG: L0159 COG0481 # Protein_GI_number: 15673090 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Lactococcus lactis # 1 607 1 607 607 802 63.0 0 MDLKKLKDYQKHIRNFAIVAHIDHGKSTIADRILELTDTVSQRQLKNQMLDDMPLERQRG ITIKMNSVEVKYHAEDGEDYIFHLIDTPGHVDFSYEVSRSLAACEGALMVVDASQGVQAQ TLANTYLAIDDDLAILPVINKIDLPSADVPKTKEEIEEMLGWDASEAAEVSGKTGQGIKD MLEKVVKDIPAPSGDITAPLKALIFDSKYDDYRGVVMSVKIEDGSIKPGDRIQIMNTGKE YEVTEVGVSSPHPIKKDILIAGDVGYITANIKSVRETRVGDTITQADNPTAEPLPGYRQI PPMVYSGMYPVDNRDYEDLKEALQKLQLNDAALEFEPETSTALGFGFRCGFLGLLHMDVV QERLEQEFDLDLIMTAPSVDYHAIMNDGTTKVIDNPSDLPDAGEYKEVQEPYVKAEIMVP NDFVGPVMELCQRKRGEFVTMDYLDKYRVNVIYNMPLAEIIFDFFDDLKSSTKGYASLDY EITGYRATDLVKIDILLNKEPIDALSFIAHRSEAQDRARQMTSMLKKLIPRQNFEVDIQG AIGAKIISRATIKPYRKDVTWKIHTGDPDRRAKLLEKQKRGKKRMKAVGRVEVPQDAFMA VLKMNDDDINGK >gi|227861552|gb|ACKR01000191.1| GENE 5 5809 - 6960 1549 383 aa, chain - ## HITS:1 COG:SPy1759 KEGG:ns NR:ns ## COG: SPy1759 COG0484 # Protein_GI_number: 15675605 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Streptococcus pyogenes M1 GAS # 1 379 1 373 378 343 52.0 3e-94 MAQEDYYKVLGVDRDASDQEISRAYRKLAKKYHPDLNHEPGAEEKYKQVNEAYEVLHDKQ KRAQYDQFGSAGVNGQGGFGGGAGQGFGGAGFDTSGFGDFGDIFGDIFGQGRQQRVDPTA PQRGQDLDYQLTIDFMDAIKGKKTQVSYTRSETCETCGGNGCEKGTHPITCDKCHGTGYM TITQQSMLGMIRRQTTCDKCHGRGVIIEHPCKTCGGKGTVDRKNTIEVDIPAGIDNGQQL RYQGQGEAGINGGPYGDLYINYRIKPSKDFERRGQTIYTEVPISFAQATLGDEINVKTVH GDVKLTIPAGTQPNKKFTLRGQGVPYLRGNGNGDQITTVNIVIPKHINDKQKKDLTNFVH DGGGNITPQEKGFFERLKDKFNM >gi|227861552|gb|ACKR01000191.1| GENE 6 7043 - 8896 2582 617 aa, chain - ## HITS:1 COG:SP0517 KEGG:ns NR:ns ## COG: SP0517 COG0443 # Protein_GI_number: 15900431 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Streptococcus pneumoniae TIGR4 # 1 573 1 573 607 775 75.0 0 MSKVIGIDLGTTNSAVAVLEGKEPKIITNPEGNRTTPSVVAFKDGEVQVGEVAKRQAITN PNTIVSIKRHMGEADYKVKVGDKEYTPQEISAFILQYIKKFSEDYLGEEVKDAVITVPAY FNDAQRQATKDAGKIAGLNVQRIINEPTASALAFGLNKDQDEKVLVYDLGGGTFDVSVLQ LGDGVFQVLSTNGDTHLGGDDFDHRIMDWLIKNFKDENGVDLSKDKMAMQRLKDAAEKAK KDLSGVSSTHISLPFISASEAGPLHLEADLTRAKFDELTADLVEKTKVPFDNALKDAGLT VNDIDKVILNGGSTRIPAVQKAVKEWAGKEPDHSINPDEAVAMGAAIQGGVISGDVKDIV LLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQIFSTAADNQPAVDVHVLQGERPMAAD DKTLGRFELTDIPPAPRGVPQIQVTFDIDKNGIVNVSAKDMGTGKEQKITIKSSSGLSDE EIKRMQKDAEEHADEDKKRKEEADLRNEVDQLIFTTDKTLKDTKDKLSDSDRKPVEDALE ALKKAQKDNNLDEMKEKKDALSKAAQDLAVKLYQQNGGAAGQAGPQAGPQGPQGGNSNNG NNGNAQDGEFHKVDPNK >gi|227861552|gb|ACKR01000191.1| GENE 7 8913 - 9497 584 194 aa, chain - ## HITS:1 COG:SP0516 KEGG:ns NR:ns ## COG: SP0516 COG0576 # Protein_GI_number: 15900430 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Streptococcus pneumoniae TIGR4 # 30 192 22 172 174 107 48.0 2e-23 MSKEEFPSEKNLEQKEKTSEPKAKKEADKGEEKKQEKNKQDQKLAKELADLKDKNKDLED KYLRSEAEIQNMQNRYTKERAQLIKYESQSLAKDILPAMDNLERALSVEADDDVSKQLKK GVQMTLDALVKAMKDHGVVEIEADGVKFDPTLHQAVQTVAAENDDQKDHVVQVLQKGYQY KDRTLRPAMVVVAQ >gi|227861552|gb|ACKR01000191.1| GENE 8 9510 - 10559 915 349 aa, chain - ## HITS:1 COG:lin1512 KEGG:ns NR:ns ## COG: lin1512 COG1420 # Protein_GI_number: 16800580 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Listeria innocua # 1 345 1 340 345 242 39.0 8e-64 MLTERQELILKTIITDFTQSHEPVGSKTVMKQLPIKVSSATIRNEMAVLEEQGLIEKTHS SSGRIPSSEGYRYYLDNLVEPLQLPESVYNTIGSQLDRPFHQVNEIVQEAARILSDLTNY TAFAEGPESHDVRVTGFRIVPLSQRQIMAILVTSDGNIQNQVYALPHNIHGEEIEKAVRM INDQLVGKSLNEINVSLLSELAKNELGGEHVTELLSLVEDVVKDAASEQMYVDGQINLLN NTSEHDVNDIRSLYELIDHNNLFTNLMDAKVDPKSGNYPVKVKLGSELPNDLLKNYSLLT AEYSVGSHGKGTIALLGPTNMPYSQMIGLLEYFRNELAKKLLDYYGKFQ >gi|227861552|gb|ACKR01000191.1| GENE 9 10696 - 11646 538 316 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 6 315 1 315 317 211 34 5e-54 MKELAVKIVHLTYPVKENILSTRIVLALGFFDGVHLGHQRLINQAKEIALQKKLSLVVLT FDRHPKEVYESKRDFKYLETLEEKANKMAELGVDYLAVLPFTKNFSQISAQEFVDNVIVR LNADTVVAGFDYTYGSKNIANMANLPQFSKGRFNIVVMPKQTFNGRKIGSTEIRQAIKDG QMKLATELMGHHYVMSGIIGHGKRNGHKLGYPTANLIWAEHKVIPKIGVYATKTKVNGKW YNSMTSVGYNVTINQDKKIYIESNIFDFNEDVYGKPMKIKWYKYTRGEKKFAGLPELKEQ LERDEQEIRAYFKQKG >gi|227861552|gb|ACKR01000191.1| GENE 10 11652 - 12545 870 297 aa, chain - ## HITS:1 COG:SP1212 KEGG:ns NR:ns ## COG: SP1212 COG0130 # Protein_GI_number: 15901075 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Streptococcus pneumoniae TIGR4 # 2 289 1 287 292 227 43.0 2e-59 MLNGILVIDKDKGMTSADVVYHLRRVLHIRKIGHAGTLDPEVTGVLPIAIGQATKLIEMM HTRPKEYIGTGLFGYSTDSYDATGTVLKEKKLIQPFSGAEIQENMNKFVGEIVQVPPIYS AVKVNGKHLYEYAREEIEVERPQRKVEVKQYDLTKEPVFDINTGQESFDFKIKCSKGTYV RSLVNDLGEKLDCPATMTYLRRTASSGFDITQAVKLKEIEENPKKATELIQPIDAFFKEY TQVDLTEEKWLKVKNGAGISLETNAKKVALRYNKKVKAIYEKKGKLYRPSLMLLQNE >gi|227861552|gb|ACKR01000191.1| GENE 11 12601 - 12966 519 121 aa, chain - ## HITS:1 COG:SPy1719 KEGG:ns NR:ns ## COG: SPy1719 COG0858 # Protein_GI_number: 15675570 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Streptococcus pyogenes M1 GAS # 3 114 6 117 118 108 48.0 3e-24 MKHRIGRVEGEILRELTKILQKNIRDPRLSGVTITAVECTNDLSYATVYYSLLTEDEHKE EEVQAGFEKAKGMMRHLLGQTLTVYKVPELIFKRDNSVLYGSKIDRLIAEVKKQDAKRES K >gi|227861552|gb|ACKR01000191.1| GENE 12 12986 - 15589 2973 867 aa, chain - ## HITS:1 COG:lin1362 KEGG:ns NR:ns ## COG: lin1362 COG0532 # Protein_GI_number: 16800430 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Listeria innocua # 137 867 54 782 782 686 54.0 0 MAKKRIYEIAKEVGVDNKVVVQKAKDLGLDVKNHMSSVDDSQVAKLKNSFQNSAPAAKSS NKKNKIKISVSSIRKNEKKQEDNNSSKNSKRRNNKRRSNNHGHENKNDRRNNTGKPKAAA LLQQFKQKQRAEEGQLNREAQKARKEYHEQLRHPKQEQPVKDNKKTSNHKDNKKKAEPVE KKVIGPKILKPSPARLKKQQPEATKELVQVTIPEAPKEEKRGNNRGRNMGKPGRKGKNQF GNGRSDHSDRSERKRRKNKKRQQEQKPKKTLTKRKERPLPETLVYEEGMNAQDIGKLIHR EPAEIVKKLFMLGVMTNQNQSLDKDTIELLAAEYGINAEQKVHEDISDIDNIYDKRMEES KESKNQVKRPPVVTIMGHVDHGKTTLLDRLRHTHVSAHEAGGITQKIGAYQVRLDDRLIT FLDTPGHAAFSNMRARGAEITDIVVLVVAADDGVMPQTVEAIDHAKSANVPIIVAINKMD KPGANPQHVTEELMKYNLIPEDYGGDTIFVNISAKTGQNVDDLLQMILLQSDVMELKANP TEMAIGTVIEARLSRGRGPVADVLIQQGTLNVGDPIVVGNTFGRVRTMTNDRGRQVKKAT PSEPVEITGLNDVPESADKLVEFKDEKTARSVGEARAQQALQKSRENVQHVTLDNLFDTM KKENMKEVDIVLKADVQGSVEALQQSLEKIEVEGVRVNIIHSGVGAINESDVTLAGASNA FIIGFNVRQTATAKSQAETDGVDIRLYSIIYKAIDDVTAAMKGMLEPTYEEKVIGNLTVR ETWKVSKVGTIAGSFVDKGLVKNDSKIRVIRDGIVKYDGEIASLKRFKDDVKEVKQGNDC GLTIKDYNDIKVGDEFEVYEMQQVEPK >gi|227861552|gb|ACKR01000191.1| GENE 13 15594 - 15905 498 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227878817|ref|ZP_03996724.1| ribosomal protein L7/L12 [Lactobacillus crispatus JV-V01] # 1 103 1 103 103 196 99 2e-49 MQNRQKAINLLGLAERAGKLTTGTETVINELNKHKIKAVIMASDVQDNTAEKVNRAARKD NIPMITMFTAIELSKAIGKKRKVLGLTDAGFAKALVKKINEGV >gi|227861552|gb|ACKR01000191.1| GENE 14 15908 - 16183 400 91 aa, chain - ## HITS:1 COG:L175136 KEGG:ns NR:ns ## COG: L175136 COG2740 # Protein_GI_number: 15672747 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Lactococcus lactis # 1 87 8 94 108 78 47.0 4e-15 MRKDLLTDTMQPKKELVRIVIDKEKNVSVDPTGKKAGRGAYVSLDPSKIEAAKEKNVLER SLGAKVPDTFYDELYSYVDHQKARKELFGDK >gi|227861552|gb|ACKR01000191.1| GENE 15 16213 - 17406 712 397 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 378 9 386 537 278 42 3e-74 MSKEMLEAFATLENTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMA VKTVVDEVQDDRLEVSLKDALTINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLRE AERKHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRV LVTHVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSN DPNIDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDD EEEKSALVIVPDYQLSLAIGKKGQNVRLAARLTSYKIDIRPESEVEFVDEKTNDTADAAD SSETSENVESTDDAADVESSDDTTTVEDSSKEDKTEE >gi|227861552|gb|ACKR01000191.1| GENE 16 17426 - 17902 504 158 aa, chain - ## HITS:1 COG:lin1358 KEGG:ns NR:ns ## COG: lin1358 COG0779 # Protein_GI_number: 16800426 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 158 1 155 155 133 47.0 1e-31 MSKVIDSVRPVVETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELV SEKLDALDPDPLPDPYVLELSSPGAERPIKTKADWEKALNDYIHVGLYQKIENKKMYEGT LKSYNDDEVVLEIKDKTRRKTLTVPRKLIANIRFAIEF >gi|227861552|gb|ACKR01000191.1| GENE 17 18013 - 22323 3684 1436 aa, chain - ## HITS:1 COG:BH2418 KEGG:ns NR:ns ## COG: BH2418 COG2176 # Protein_GI_number: 15614981 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Bacillus halodurans # 4 1436 8 1433 1433 1467 51.0 0 MANKNDLFLKLLKQVQFPDSFEDNALLQKGKIENVDVYAKEHRWDIHVFFDTPLMYDTYV ALRKAVEETFSSFVNVRFYVGTADGSDQYLPDYWHYVVQNSNILQPVAREFLAGQKPKKV DGRWVIPVDNNVIDGLIEQKALDDLAEEMRDYGFFNLKFITQLDQTSSKNNLESLQELQQ EHEKSMQEVFEKTPDKPKPQQPKQYPTRRTNYGKRKLDENAPITQIKELEDGVRNVVIEG NIFNVETRELKSGAIIFSGEITDYSDSIAFKKFVSNKDEIEELSAIKPGTWAKMQGSVAD DQYIHDVVFNISSLETVEHVGQTEKYEGEPKRVELHVHTNMSQVDATNTPTDFIKTAKKF GQKAIAITDHGDVQSFPEAYSSGKALDMKILYGVEANMIDDHALLVLNPAPMTYEGREFV IFDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDKFINPHHPLSEQTINLTSITDEMVGA ADDEAVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTLEVSRLLHP EQSRHTLDSLAKKYNVSLEHHHRANQDAEATGYLMFKLLDAFNKKYHENNLNNLNGYAAH GEVYKRARPSHMTVLAKDQAGLKNLYKLVSIASTKDFFRIPRTPKSDLARLHDGLLYGSG CWQGDVFIAMMQKGYDEAREKAKFYDYLEVQPPATYSQLIADGLIKDEDQLHEIIENIIK LGKELNKPVVATSDAHYVDQKDAIYRKILIAAQRSNPSRNKPQPDLHFYSTQEMLDAFSF LGEDVAKKIVIDNTNKIADELSEIQPIKDGLYPPHIEHADEEMKKLTYDKAYELYGKPLP KIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVGSRGSVGSSLVATMSGITEV NPLAPHYRCPNCKYSQFFENGEYGSGFDLPDKDCPKCGTPLVKDGQDIPFATFLGFHGDK VPDIDLNFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYGYAKHYDEEHDLKLRN AELDRLAAGVRGVKRTTGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSI HDNILKFDILGHDDPTMIRHLQDLSGIDPLTIPPDDPGVMSLFSSPDILGVTPEQIQSET GTLGVPEFGTRFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINQGICKLKNVI GCRDNIMMDLIHWGVKPEVAFSTMESVRHGRGISDENMAILKKNKNIPDWYIPSCLKIKY MFPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKAAMKEIQ DKGNDASAKDKSLMTVLEIANECLERGIKIKMVDIDQSEATDFKILDKHTILAPFNAVPG LGDNAAKQIVAARAEKKFLSKEDLAKRGKVSQTIMNYFEENGVLEGMPDENQLSLF >gi|227861552|gb|ACKR01000191.1| GENE 18 22329 - 24026 2017 565 aa, chain - ## HITS:1 COG:BS_proS KEGG:ns NR:ns ## COG: BS_proS COG0442 # Protein_GI_number: 16078720 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Bacillus subtilis # 1 563 1 564 564 589 51.0 1e-168 MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEGIIEQE MDKINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKNA YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEKGTYAANLEMAKSID TFKQEPEDAKQLTKVATPGCDTIEKLAKFLDVPATRIVKSILYIADDQKVLVLIRGDKQI NEVKLGHILDADEVHEANTADLKEITGSEKGGVGPVNADWADKIIADETVKNLYNVVVGA GETDYQFENANLDRDFKVDEFADIRTANEGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTK TMGADFLDQNGKAKPVIMGSYGIGVTRMLSAAVEQHLTERGVAWPKEIAPFAIHIVQMKM NKEDQTELAEKLEKKFSEKYDVLYDDRKERAGVKFADADLVGAPIRITIGKKAADGIVEV KRPTDDKATEMSIDELDKFVNQELG >gi|227861552|gb|ACKR01000191.1| GENE 19 24054 - 25310 1329 418 aa, chain - ## HITS:1 COG:lin1355 KEGG:ns NR:ns ## COG: lin1355 COG0750 # Protein_GI_number: 16800423 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Listeria innocua # 1 416 1 419 420 318 40.0 8e-87 MKGILIFIVVFGILVFVHEFGHFIVAKKSGILVREFSIGMGPKLFQIRRNPTTYTIRWLP LGGYVRLAGADDESKLDPGMTVVLQLNEQNEVVRIDASESEIPIEGIPVQVTKADLVDDL IIKGYENGDENDPVTYHVAHDATIIEKNGTELIIAPRDTQFNQANVWQKLATNFAGPFMN ILLGFVVFLIWTFTVPGPATTTVGSTQANSPARDAKIVTGDQIVAINGQKINNFDQVSQQ INQSKGKVLHFELKKNGQIRKVTVKPKAHKIQKQTVYQIGIVAKSNENAVVKLKRGWDTA ISTTGLIFRAVGNLFSHFSLNKLSGPVGIYSQTSQVSQMGFTYVLAFLGMISINLGIVNL IPIPGLDGGKLLLNLIELVRGKPISEEHEAIVELIGFGLLLVLIIAVTGNDIYRYFIK >gi|227861552|gb|ACKR01000191.1| GENE 20 25323 - 26138 741 271 aa, chain - ## HITS:1 COG:lin1353 KEGG:ns NR:ns ## COG: lin1353 COG0575 # Protein_GI_number: 16800421 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Listeria innocua # 1 263 1 256 262 205 48.0 1e-52 MKQRTITAIIALCLFIPIVLAGGLWMDWLTVLFAAVGISEIFLMKKQILVSFNFLLALLA TLTWTVPDSFFKVFPSNITKLGVFYGIIMLFLTWTVLSKNKTTFDDVGVYILAALYIGIG FHYMAAIRAYPQNGLALLGCVFVVVWSTDIGAYMIGRKIGKHKLWPVISPNKTWEGSIGA VVCALICSAIYMAILGSLGINFGVSELTMIILAFFLSIVGQMGDLVESAYKRFYGVKDSG KILPGHGGILDRFDSMLFVLPVVATILGIVH >gi|227861552|gb|ACKR01000191.1| GENE 21 26141 - 26875 622 244 aa, chain - ## HITS:1 COG:lin1352 KEGG:ns NR:ns ## COG: lin1352 COG0020 # Protein_GI_number: 16800420 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Listeria innocua # 10 237 26 250 252 277 57.0 2e-74 MSNKDNELNHLAIIMDGNGRWAKKRHRPRFVGHREGMDNVERITLAADKLGIKVLTLYAF STENWARPKEEVAYLMNLPVRFFDKYMPTLMENNVKVNIMGYLDELPEKTYRIVQRAMSE TANNTGLILNFAFNYGSRREITSAMQELGGMIEAGSLKSEEITEKMISDHLMTKNFGPYQ DPDLLIRTSGEQRISNFLLWQLAYSELAFSEKNWPDFDENDLKKFVEDYKHRNRRFGKVD ESDS >gi|227861552|gb|ACKR01000191.1| GENE 22 26878 - 27435 698 185 aa, chain - ## HITS:1 COG:L0367 KEGG:ns NR:ns ## COG: L0367 COG0233 # Protein_GI_number: 15673991 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Lactococcus lactis # 1 182 1 182 185 192 60.0 4e-49 MNNETIEKAKTKMTDSIKVYQKRLASIRAGVANAALLDNVQVEYYGAPTPLTQMSSITIP EPRVLLITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKF AEEAKIAVRNVRRDAMNTLKKDEKNGDITEDEQRNLEKQVQKVTDDAAKQIDQLADEKRK EITQG >gi|227861552|gb|ACKR01000191.1| GENE 23 27435 - 28160 1103 241 aa, chain - ## HITS:1 COG:L70624 KEGG:ns NR:ns ## COG: L70624 COG0528 # Protein_GI_number: 15673992 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Lactococcus lactis # 1 237 1 237 238 324 69.0 8e-89 MSQVKYKRVILKISGEALAGDKGTGINPTVIGHLAKEIKSVHDLGVEIGIVCGGGNMWRG ETGAKLGMERAQADYMGMLATIMNGLALQDGLEKIGVPTRMQTSIEMRQIAEPYIRRRAL RHLEKGRVVIFGGGTGNPYFSTDTTAALRAAEIGADVILMAKNGVDGVYSADPKTDPSAT KFSELTQLDLISKDLKVMDRTASSLSMDTEIPLIVFNVNTPGNIKKVVLGENIGTVIRGD K >gi|227861552|gb|ACKR01000191.1| GENE 24 28305 - 29330 461 341 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 336 1 275 283 182 36 4e-45 MAQITAKLVKELRERTGAGVMDAKKALVEVDGDMDKAVQYLRDKGMAKAAKKADRVAAEG LTGVYVNGNVAAITEVNSETDFVSQNDKFVNLVNEATKTIAEGKPADMEAAKELKMADGT TLDQSFVNATATIGEKIVLRRFALEEKNDDQEFGAYQHNGGQIGVITVLEGADAATAKHL AMHIAAMSPKVISPDELDDQFITDQLAVMNHKIDQDNESRALVHKKPLPHLVYGSAKQLT DDVLAKAKEDIKAELKEEGKPEKIWDRIIPGKMQRFIDDNTQVDKQFAVLSQDYIMDDSK TVGEFLKEKGAKLVAFQRYEVGEGIEKKQEDFAAEVREQMK >gi|227861552|gb|ACKR01000191.1| GENE 25 29364 - 30137 1318 257 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227878829|ref|ZP_03996736.1| ribosomal protein S2 [Lactobacillus crispatus JV-V01] # 1 257 1 257 257 512 100 1e-144 MADVVTMKQLLEAGVHFGHQTRRWNPKMAPYIFTQRNGIYIIDLQKTIKMLDDAYNFMKA VAQDGGVFLFVGTKKQAQDSIAEEATRAGQYYVNQRWLGGTLTNWSTMQSRIKRLKQLKQ MSEDGTFDVLPKKEVALLTKEMDKLEKFFGGIEDMPRIPDVLFVVDPKKEKIAVHEANIL GIPVVAMVDTNTDPDPIDVVIPSNDDAIRAIRLIAGAMADAVVEGQQGQDDESVEVDFKE NADGSEEIVSAEENPED >gi|227861552|gb|ACKR01000191.1| GENE 26 30302 - 31333 1030 343 aa, chain - ## HITS:1 COG:BS_yabB KEGG:ns NR:ns ## COG: BS_yabB COG4123 # Protein_GI_number: 16077102 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Bacillus subtilis # 1 244 1 242 247 168 38.0 1e-41 MVDLKDNERIDYMYSDNLRIIQDKTAFSFSMDTLFLAYWAKDLIRDKDKVADLCAGNCAA TIYMAYFNRAHYDAIEIQNEVYSQAVRSVKLNEMENRISVFQDNVLNAGHFLRKDSYDVV TVNPPYFKAPKGHEVNPDRKKAIARHELLINLEQIIEVASGLLKMKGKMLMVHRPERLGE IAYYCMKHDLSIKMVQPFVPHRGEDANLIIVEAVKHTGTDGTVLKDAVEVHESNGDFTPL VQRISRETADDKAKHEAQGKYYFYVLLCNDGSFYGGFTNDLEHRLKMHNLGKGAKYTKTR RPVRMIYHEQFDDKRLALKREYWFKHHSRAWKEKFLHEHNIKF >gi|227861552|gb|ACKR01000191.1| GENE 27 31407 - 32021 454 204 aa, chain + ## HITS:1 COG:SP1624 KEGG:ns NR:ns ## COG: SP1624 COG0204 # Protein_GI_number: 15901460 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 194 1 196 249 187 44.0 1e-47 MFYKIIRPIVRFIVWVLNGHLHIHHKDRLPQGNYILVAPHRTWWEPLLFALGASPMEFMF MAKIELFKNPVLRFILDHAHAFPVDRNNPGPSALKIPVKGLREGKLSLIIFPSGTRHSAE LKGGVLLISKMSKKPMVPVVYQGPLTFKGLLKRKPLEVNFGDPITIDRKTKLTHENEQIL FQQLEDAWNKLDKEMDPNFHYVAK >gi|227861552|gb|ACKR01000191.1| GENE 28 32158 - 33303 1248 381 aa, chain + ## HITS:1 COG:CAC0877 KEGG:ns NR:ns ## COG: CAC0877 COG2230 # Protein_GI_number: 15894164 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cyclopropane fatty acid synthase and related methyltransferases # Organism: Clostridium acetobutylicum # 7 378 16 389 391 382 50.0 1e-106 MMLSKSFPFSVKVTYWDGKSEVYGNGDPEIEIVFNEKIPMSEITRNASLALGEGFMDKKI EIHGNIQKLLVGAYESADSFMRASKFRKFMPKQKHTEKQSEEDIQSHYDIGNDFYKMWLD PTMTYSCAHFEDGNKDDLEQAQIAKVHHILNKLHPQKGKTLLDIGCGWGTLMLTAAKEYG LKVTGVTLSEEQFKLVQKRIYDDNLQDVAKVRLQDYRELGDQKWDYITSVGMFEHVGKEN LPKYFADVYKYLNKDGVALIHGITRQQGGATNAWLNKYIFPGGYLPEIVTDIIDSGLQIT DMETLRRHYQRTLEIWDKNFNAVRPEVEKKFGERFCRMWDMYLNACAASFESGNIDVIQY LLTKGPSGKTLPMTRKYMLDK >gi|227861552|gb|ACKR01000191.1| GENE 29 33363 - 35306 1926 647 aa, chain - ## HITS:1 COG:SP1647 KEGG:ns NR:ns ## COG: SP1647 COG3590 # Protein_GI_number: 15901483 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Streptococcus pneumoniae TIGR4 # 24 647 5 630 630 452 39.0 1e-127 MKRYFTVRGGAGDVSKPDLNAKPQDNLYLAVNSEWLSKAEIPADKTSAGVNSELDQKIED RVMKDFADIAAGKEKMPEIKDFDKAVILYKIAKDFAKRDAEKANPIQKDLQKLISLNNFN DFKQKAADLFMGPYALPFVFDVDADMKNTDVNVLHFGGPSTFLPDTTTYQTADAKQLLDT LQDQSINLLTMSGIGKSEARVYVESALAFDQKLAKVVKSTEEWSDYAAIYNPVTYADFIK KFKSFDMADFMDSILPVKPDRIIVMEPRFLNHAEELLNEGNFAEIKGWMLVKYINSVAKL LSQDFREAAFPFGQAVTGTPQLPSQIKQAYRLANGAFDEVVGIFYGQKYFGAKAKKDVED MIQRMLKVYEERINANKWLSAETKKKAVIKLKALVLKIGYPDKIEEIFDLLQVDPKKSLY ENEAAMSTVRTKYMLNKLTKPVDRSVWLMPGNLNNACYDPQRNDLTFPAGILQAPFYDIN QSRGANYGGIGATIGHEVSHAFDNSGAKFDEHGNMNNWWTDKDFAEFNKRVGQMVDIFDG LQYGPAKINGKQVVGENIADLAGLACVVQTGENDGADLKDLFENYARSWMQKQRPEAIKT EVQTDVHAPQPTRVNIPVQCQNAFYDVFNVKPTDGMWLDPEERITIW >gi|227861552|gb|ACKR01000191.1| GENE 30 35401 - 37200 206 599 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 358 587 279 515 563 84 28 2e-15 MNNNEEQHESVWSKAIPFKEQVDIFKRLMGLVKQFKFEMIVALVGAFIVSVINILLPRGL QYFLDHFLLHQSTTVQVILFAGFLYALGSILKAIIQFTYQYFFALGSEKTLESVRRALYR KLHKLGMRYFDQTPAGSIVSRVTNDTMTLSNFLTVLSTFVIGAFSVITALVAMFTTNIVA GWLILLFIPILLLVVWLYSQKSSRLYRNYRERLSRINANLNESIEGVSVIQEFNQEKRMT NNFEGENGGLMNTRFNMIRVNSLLLSPLTSLLYSLALAISLMYFGFPLRETFVPAGVVYA FSQYISQLFNPISTVMDQMTFFQDGIVAGKRIFRILDDTQYEPQQDAQKGLTITKGKIEF KHVSFSYDGKHEILHDISFVVNPGETLGIVGHTGSGKSSIINVMMRFYEFGQGEILIDDV NIRKYPKEELRKKLGLVLQEPFMFYGDISSNIRLYNNQITDNQIKDAAKAVQADRFIERM PGKYHAKVIEGGEEFSQGQRQLISFARTLVTDPKILVLDEATANVDTETETLIQQGLKRL RKGRTTLAIAHRLSTIADADQIIVLDKGRIIERGTHDQLLAQKGYYYNLYTLQNNENKN >gi|227861552|gb|ACKR01000191.1| GENE 31 37193 - 38959 224 588 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 332 565 123 354 398 90 27 1e-17 MGIFSKLGWFFKAEKKRYIIGITFLALTSLANLVPPRVLGLMADQLDQGHISWGQYGMLI IAVVAAAFTLYILRYFWRKQIWGGAAELERQMRSKLFDHFMVMDRTFYQRHRTGDLMAHA TNDVSAIQNVAGDGVLTLVDSLVMGLSTMIAMIIFVDWRLTIVALLPLPFLALGAWKLGD HLHDAFDKSQAAFSKLNNKTQESVSGIKVLKTFGQGKEDTAAFDKMVDETININKKVFVW DSLFDPLGTIIIGTTYVITIIYGGLLVTNKILSIGQLVSFIAYISNMVWPMFAIGYLFNI LERGSASYDRVEKLLDERPLITDAHADPNITSQDLQGELKYDIKSFAYPDEPDIPVLKQV NFTLKPGQTLGLVGRVGAGKTTIIQLLLREFDQYDGQITLNGKDIRNIQLKVLLSQISYV PQNNFLFSTSIGKNIAFSSENVDKDDIAAAAKKSDLHDDVLQMPKGYETLVGENGLSLSG GQRQRMSIARALLKDSQILILDDALSAVDAKTETEILSSLRKERADKTTMIAAHRLTSVM DADLILVLKDGQIVERGNHQQLLAADGWYAEMWRRQELQAKVGEDTDE >gi|227861552|gb|ACKR01000191.1| GENE 32 39038 - 39256 302 72 aa, chain - ## HITS:1 COG:no KEGG:lhv_1362 NR:ns ## KEGG: lhv_1362 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 1 72 1 72 72 116 98.0 2e-25 MNLGLAIFLIIIALLIGAVAGFYGARAYMKKYFKENPPISEDMIVAMMSQMGQKPSNKKV HQVMNMMKHQQK >gi|227861552|gb|ACKR01000191.1| GENE 33 39323 - 39589 387 88 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01293 NR:ns ## KEGG: LCRIS_01293 # Name: not_defined # Def: hypothetical UPF0291 protein # Organism: L.crispatus # Pathway: not_defined # 1 88 1 88 88 95 98.0 7e-19 MDNKDAMSKEEEKKVTDRINELYHKKEKEGLTPEEEAERKELHKKFLANFRAAFKQDVEN MVILDKNGKEVTSERAKRAQRRKGLRKD >gi|227861552|gb|ACKR01000191.1| GENE 34 39746 - 40372 704 208 aa, chain + ## HITS:1 COG:lin1340 KEGG:ns NR:ns ## COG: lin1340 COG1974 # Protein_GI_number: 16800408 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Listeria innocua # 8 205 5 202 204 230 60.0 2e-60 MPRKTSDKKQLEILQYIYDTVEKRSIPPTVREICSAVGLSSTSTVHGHLARLERKGWLVK DATKPRALEITREGKKELGIKPKEIPVIGVVTAGQPILAVEDIDDYFPLPPDLKSDAGEL FMLKVHGESMINAGILNGDSVIVRKQSSANNGEIVVAMTEENEATVKRFYKEKDHYRLQP ENDTMAPIILPKVTILGKVVSLYRNNID >gi|227861552|gb|ACKR01000191.1| GENE 35 40741 - 42033 992 430 aa, chain - ## HITS:1 COG:slr2062 KEGG:ns NR:ns ## COG: slr2062 COG0675 # Protein_GI_number: 16330462 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Synechocystis # 83 425 44 366 400 106 26.0 9e-23 MTNYYLKTRVYELFPSKTMKAVLDRNCDYRRYCWNQALALWNDLYFAHQIYDKIRYTTFT PKENKKTHQIKIIKKDVHLNPSPSWRLVRDKLVEDKEDWQFNYSAHLLQLAVQDLGKAWN NFFDKAQPDWGKPRFKSKREVRQGFKSDQAKVINGELVLEKPKGLKQEWEAIGLSEKPLD YPTGVMSIYRESGRYFVSIPYKIPKNEFKAKASTGRVTGVDLNVGHFNYIAGDERILPQK LEYTYEKIKHYQRLLARKRKVNGRKESTKSNNYLKTRTKLQVAYKRATNIQNDLLQKFTA KLTNDYDAIVVENLDVKKMMMSHVASKGMHRSMFGKFRQIIAYKCKWYGRELIIANSLYP STQRCAVCGTVKKGEDKITLKGNKKHGTKHNEFICYNSKCPNYNQKVDRDENAMLNLTML VEHPELNKAL >gi|227861552|gb|ACKR01000191.1| GENE 36 42068 - 42670 593 200 aa, chain - ## HITS:1 COG:SSO1760 KEGG:ns NR:ns ## COG: SSO1760 COG2452 # Protein_GI_number: 15898559 # Func_class: L Replication, recombination and repair # Function: Predicted site-specific integrase-resolvase # Organism: Sulfolobus solfataricus # 4 189 5 181 194 141 38.0 9e-34 MYLKEAAAYLGKAPFTLQSWDRAGKLKAHRTANNRRFYYQSELDQYLGLDHNEPIDKRKI IAYARVSSNGQKDDLKDQVAFLRQFLNARGIIADGYISDIGSGLNYKRPKWLKLIKDIDK NQIKEIYVTYEDRFIRFGFDFFEKFCSWHDCKIIVLNNEDTSPDKELVQDLISVIHVFSC RLYGLRRYKNKIKNDPNLKE >gi|227861552|gb|ACKR01000191.1| GENE 37 42756 - 43403 567 215 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01295 NR:ns ## KEGG: LCRIS_01295 # Name: not_defined # Def: acyl-CoA thioesterase # Organism: L.crispatus # Pathway: not_defined # 1 212 1 212 259 422 98.0 1e-117 MSNETFLIPIRQNNDLSDIALNELRMDLDEHALHQRYYTDIAYLAGNSRKYSLNSVQTVA SPLIGKKILFLGSSVTFGFGALGESFVDYLWKRDGVAAIKDAENGTTLVDEDTYKTNDSY VARFREELTESQPDVFVLQLSTNDANQNKKLGKITNQNFDTKTITGALEYMISTAQARWK CPILIYTNPYFANPLYKQMVERVHELAQKCQLRQV >gi|227861552|gb|ACKR01000191.1| GENE 38 43396 - 44055 578 219 aa, chain - ## HITS:1 COG:PAB0474 KEGG:ns NR:ns ## COG: PAB0474 COG1573 # Protein_GI_number: 14520900 # Func_class: L Replication, recombination and repair # Function: Uracil-DNA glycosylase # Organism: Pyrococcus abyssi # 34 213 41 194 196 92 35.0 8e-19 MDYPKKLIDEVKERSKGMQLEGINSVSGPQHPLLMIVGEAPGRNEIVNNIPFSGDAGKEL DKSLKQIGLTRDQVYITSAVRSRPFAIKKVFSKRENKEVIKYPNRKPTKKEILAHAPFLD FEIEYAQPKLIVALGNTGLERLLGSGHKISAEHGQVIKNTPILRLNETKDGYIWSKERYT IFPEYHPAAVFYNRKLTDDIIKDWDKIKPYVEKEKSENE >gi|227861552|gb|ACKR01000191.1| GENE 39 44405 - 45529 905 374 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01297 NR:ns ## KEGG: LCRIS_01297 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 374 1 374 374 655 98.0 0 MKFNCKFALVAATVLTVALILSFPNITTTVQATTKKAQAAKNTIRVNKAPIIYDRAGNYN SKYHQNIKAGTRLKYSGKTYIIQQRFAAGIPVPTSRIIGGKLYYSIGKGGYVKESDVLTW LGNTNTVKLHFRHKKNYIYDKNGKKLVSYNGGKNYFTNKQKPKIEVPYYNSPKQLFNIGK GGYIDASQVTTLNGKGTVFLNNNAPIYDATGKQVKNKNLKQGTVLNYYGKPKKAAANTQF YYYQNKTKMTLPAIQQGDHTYFQISKTQYINAADVALVDGKTLWDKGPVSVSLINDAYAY TAKFKQNKKVLYRAGAKLTVDRIKIEGKKSPQLYLHVKGTKNYLYWSNEKDYGASPLDYR HGSTNLILQTLLHN >gi|227861552|gb|ACKR01000191.1| GENE 40 45641 - 46018 633 125 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227878845|ref|ZP_03996752.1| 50S ribosomal protein L19 [Lactobacillus crispatus JV-V01] # 1 125 1 125 125 248 100 5e-65 MNAEEGEKYIMDPLIQELTKEQLRDDIPAFRAGDTVTVHVRVVEGTHERIQLFEGVVIKK KGTGIGATYTVRKIASGVGVERTFPVNDPRVAKVEVKRHGRVRRAKLYYLRERHGKSARI AEARR >gi|227861552|gb|ACKR01000191.1| GENE 41 46102 - 46821 864 239 aa, chain - ## HITS:1 COG:BS_trmD KEGG:ns NR:ns ## COG: BS_trmD COG0336 # Protein_GI_number: 16078666 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Bacillus subtilis # 1 237 1 243 243 256 51.0 3e-68 MKINVLTLFPDMFAPLQVSMLGRGLEDKKWELNLVNFRNFTTDVHHHVDDTPYGGGAGMV LQIMPIKKALDSLPSTGKVIITAPQGKTFNEKMAQSWAQEDELTFICGHYEGFDQRVYDL ADETVSIGDYVLTGGELPTMSMIDATVRLLPGILGNAASPVEESFSHGLLEYPQYTRPAD FEGQKVPEILTSGNHQKIAQWRHKEALRTTYLHRPDLLKERVLTTEEKKMLADIKAELD >gi|227861552|gb|ACKR01000191.1| GENE 42 46811 - 47326 169 171 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 [alpha proteobacterium BAL199] # 13 170 14 168 179 69 29 3e-11 MEYYDVARILTMHGLNGEVKVSVITDFPEDRFAIGMHLAIKGETSQVLTVAKSRPFKQFW LVQFAEITDIDQAEKLKGKILVVSEADRGELPEGVYYYKDIFDCDVIDEESGKRLGKITD IESPGANDIWLVHEDNGKEYWIPNIASVVKKVDVANKKVYVELLEGLRDED >gi|227861552|gb|ACKR01000191.1| GENE 43 47393 - 47665 467 90 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|58337565|ref|YP_194150.1| 30S ribosomal protein S16 [Lactobacillus acidophilus NCFM] # 1 90 1 90 90 184 100 9e-46 MSVKIRMHRAGAKRKPFYRIVVADSRMPRDGRFIEQVGYYNPVSQPKELKLDEDKIFEWL QKGAQPSDTVRSLLSGAGLMAKLHDAKYNK >gi|227861552|gb|ACKR01000191.1| GENE 44 47753 - 49183 1660 476 aa, chain - ## HITS:1 COG:SP1287 KEGG:ns NR:ns ## COG: SP1287 COG0541 # Protein_GI_number: 15901147 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 445 1 445 523 524 62.0 1e-148 MAFENLSERIQKALKNLTGKGKVSEEDINKASREIRLALLEADVNFKVVKDFIKTIKKEA LGKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKSKHIPTIIMMVGLQGTGKTTTVGK LAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGDQLKVPVYSEDGEKDVAKIVQDGLAEA EKNKNDYVLIDTAGRLEIDEPLMEELERVKKVAHPDNILLVVDAMTGQAATDVAKGFDER LDITGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLSDLDVFHPDRMASRILGMGD MLSLIEKAQQDYDAKEAEKVAEKMRENTFDFNDFVDQLQQVQKMGPLDQIMKMIPGLANN PQLKNLNVDQKQIDHTEAIVYSMTPEERENPDMLNPSRRRRIAAGSGRPVVEVNRMIKQF KQMRDMMSKMSKGNMKGLSNLPGMDSPMAKMAMRRMNKNFKKNKKKRLRKVKRFHS >gi|227861552|gb|ACKR01000191.1| GENE 45 49187 - 49528 269 113 aa, chain - ## HITS:1 COG:SPy1201 KEGG:ns NR:ns ## COG: SPy1201 COG2739 # Protein_GI_number: 15675166 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 3 76 5 78 113 68 52.0 4e-12 MDELTKNEELGDLYAYYGSLLTQGQQSYFEDYYYNDLSLGEIAANHQVSRQAVYDNLKRS SKILQNYEEKLHMKRDNNQVEDVLADTLLSLDNGDSEAAKKEITNLLNQLRGE >gi|227861552|gb|ACKR01000191.1| GENE 46 49719 - 51131 1768 470 aa, chain + ## HITS:1 COG:SA2396 KEGG:ns NR:ns ## COG: SA2396 COG0531 # Protein_GI_number: 15928189 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 4 466 11 473 482 595 69.0 1e-170 MNSKEDPRVYENKDGHLVRSLKVKDFLALGVGTIVSASIFTLPGEVAAKHTGPAVAISFI LAAIAAGLVAFAYAEMAAAMPFAGSAYSWINVVLGEFWGWVAGWALLAEYFIALAFVGSG LSANFRALIAPLGWKLPASLSNAFGNNGGIIDIISLVSILLVALLIGHGVSRAARVENAL VVLKVLAILLFIAVGVFAIKKVNFTPFIPKYKMTANGPFGGWQGIYAGVSMIFLSYIGFD SIAANSAEAINPQKTMPRSILGSLAIAVTLFVGVSLVLIGIMPYQKYANSAEPVGLALRF AGHPIVAIIVQTIAVLGMFTALIGMSMAGSRLIYSFGRDGMLPKWLGKLNADRRPNNALW TLTIVAILLGAFFPFSMLSQLVSAGTLIAFMFVSLGIYKLRPREGKDIDDPSFKMPFYPV LPALGFMAALIVFLGLDYQAKFYAGIWFILGLIIYFSYGVRHSILNKQNK Prediction of potential genes in microbial genomes Time: Wed May 25 06:49:31 2011 Seq name: gi|227861543|gb|ACKR01000192.1| Lactobacillus crispatus JV-V01 contig00208, whole genome shotgun sequence Length of sequence - 10334 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 3, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 36/0.000 - CDS 27 - 1853 1288 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 2 1 Op 2 . - CDS 1868 - 2614 283 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 2659 - 2718 6.7 - Term 2691 - 2733 7.2 3 2 Tu 1 . - CDS 2746 - 2994 192 ## LBA1293 putative transcriptional regulator - Prom 3079 - 3138 5.1 - Term 3125 - 3155 -1.0 4 3 Op 1 . - CDS 3167 - 4588 1957 ## COG4690 Dipeptidase 5 3 Op 2 10/0.000 - CDS 4633 - 5880 1513 ## COG0552 Signal recognition particle GTPase 6 3 Op 3 6/0.000 - CDS 5881 - 9450 3864 ## COG1196 Chromosome segregation ATPases 7 3 Op 4 . - CDS 9463 - 10152 637 ## COG0571 dsRNA-specific ribonuclease - Prom 10172 - 10231 6.3 Predicted protein(s) >gi|227861543|gb|ACKR01000192.1| GENE 1 27 - 1853 1288 608 aa, chain - ## HITS:1 COG:lin2220 KEGG:ns NR:ns ## COG: lin2220 COG0577 # Protein_GI_number: 16801285 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Listeria innocua # 2 608 3 645 646 144 21.0 6e-34 MLWKLSLTGLKSRFKDYAVLFSGLTLAAAIFYMFMTIAINPAFLKGSMAIAFSITQMVFI FGIALLAIITLVYIVYANSFLLSMRKKDYGTYMILGARNSKIGRLIFTETVVIGLLATAL GILIGIGLTQVVSQLLISQLGLQLHKFLGFYLPAILWTVVFFVVLFFLAAIWNRHKLVST SVIKLLHEDQKPVKLRNNRIWKATEVILGLALLAIGYWAMWDYHQLQIKSVEIGFVTILA GSYFVFDSVFTTVINALRKNKKFKYSKLHSFTLGQLKFRLGDYNRVLTVISLLFALALGA ITVGLNFNNMTETALQATYYDAVLYKRDAKVNQQLKKVAVRKQTTLNYKVNGKKKFPVLY VTDQEIAKKKIKFQSGRKNGDQMNWKTKTITVAGVKNKKQEMNFQLASLTPYSDYEVKVV TPAEYVKIPGKNKQVTLLLINNFRSNFNNIEKLQKMSLDQTVTKDAQGVYVSLNNSKSAQ YRLVASVASGFEFMGFFLGLAFLAMLASTLMFKVLSGANSDRPRYEMLWKVGSRRKLLKS SIKAEIGTLFALPAVLGVIDVLFGLQFFKGILANPYDKIWIPFTIFLVLYLLYYLITVKL YEGIVLKK >gi|227861543|gb|ACKR01000192.1| GENE 2 1868 - 2614 283 248 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 223 1 219 223 113 31 5e-25 MSEILRVDQVTKTYGKKGEKQYQALKGISFAIEQGEFVGIMGASGSGKTTLLNILSTLDK PTSGHVLVNKQDITALKNNQMADFRGKEIGFIFQDFNLLDNLTNRENIALPLSLQGVKAK DIDGKAMAIAKRLGIESILDKYPAEISGGQKQRVASARALVHNPAILYGDEPTGALDSQS ATELLKTMADLNKNDQVSILMVTHDPYSASYAQRILFIKDGKIGKEIKKENKTREEFYQD IIAELGRR >gi|227861543|gb|ACKR01000192.1| GENE 3 2746 - 2994 192 82 aa, chain - ## HITS:1 COG:no KEGG:LBA1293 NR:ns ## KEGG: LBA1293 # Name: not_defined # Def: putative transcriptional regulator # Organism: L.acidophilus # Pathway: not_defined # 2 79 38 132 135 84 65.0 1e-15 MLIELNHHQHGKTFEKLAKELHVTNDKVKSLTKKLAAKDLCKKFEKHRAETDQTITGMLS KDETLGLVNVLKKMLKSSEDNK >gi|227861543|gb|ACKR01000192.1| GENE 4 3167 - 4588 1957 473 aa, chain - ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 6 471 10 474 474 368 41.0 1e-101 MKEYSACTTILVGKNASIDGTTMIARNDDTFRPITPQKFIIEPARHGEKKHIKSWLNKFE MDLPEDAQRVPAVPNVDYKHRGYYDESGINQENVAMSCTESTYGNERTLAFDPLVKDGLD EDCMQTSVLPYIHSARDGVQYLGKLIAKYGSPAGNSVLFSDKDEIWYMEIVTGHHWVAER IPDDCYAATGNRVAIEQVDFDNPDYFMWSKGIQEFVEEHHLNPDHEGWNFRHIFGTYTEQ DRHYNTNRQWYIQKLFNPEIEQNPQDGDIPFIRKAAKKITKEDIQFALGSHYQDTPYDPF GKGTDEEKHRYRPIGLNRTQNAHILQIRSDVPADRAAIMWLCIGGPTFTPFVPFFANMND TDPSYNNTSMDYNMNDAWWYYKSFAAIVESHYPQFVQLDTTYLTELNRYFRGRVEEIIAG AEGKSGDELTEYLTKENQKTVAHTRKETEKLWGQMMIESINMSKLTFNMDENL >gi|227861543|gb|ACKR01000192.1| GENE 5 4633 - 5880 1513 415 aa, chain - ## HITS:1 COG:SP1244 KEGG:ns NR:ns ## COG: SP1244 COG0552 # Protein_GI_number: 15901105 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 415 1 429 429 337 52.0 3e-92 MGLFDRIKKSLFGKKDEEDENKKEEKQTEQENEAKPESEDNDQESEKVVDEAKSKTETTD EEEQTVEAQEDSEVEAESGDEEKAVDLDSKQQPEEVKVEETTETETEEQLYEKGLEKTNK GFGARLNAFFAKFRTVDEDFFDDLEDLLIESDVGYETAEQLTDELREEAKLQNAKSRDDL KRVIVEKLVDLYDKGGNSEDEQLTYNAEAKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGK SVILAAADTFRAGAVEQLVEWGKRVDVPVVTGKEKADPASVVYDATERAIREKADYLLVD TAGRLQNKKNLMAELEKIQRTIKKLLPDQPTETLLVLDGSTGQNALLQAKDFDKTTKLTG LVLTKLDGSSKGGVVLAIRNEMNLPVKLVGLGERAEDLADFDAANYAIGLFHGLV >gi|227861543|gb|ACKR01000192.1| GENE 6 5881 - 9450 3864 1189 aa, chain - ## HITS:1 COG:lin1918 KEGG:ns NR:ns ## COG: lin1918 COG1196 # Protein_GI_number: 16800984 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Listeria innocua # 1 1181 1 1180 1186 620 37.0 1e-177 MPLTELVLDGFKSFADKTTIHFDDGITGIVGPNGSGKSNITEAVRWVMGESSAKSLRGTN MKDVIFAGSQFRKPLNKAEVTLVFDNKKRELAFNSDQVSITRRILRSGDSEFLINNQQVR MRDVRTLFLDSGISPNSLAIISQGRVDQILNSRPEQRRVIFEEAAGVLHFKQQKEAAKAQ MEKTKDNLIRINDLVKELEGRLEPLHEQSSLAKEYQFQKKGLDQKLKSLLAFEIEDLNRQ KEEVQKAADRNRILLTKLDNEVKGSQSAVSEKRAEYQKIQNEREQTQSELLKLSDQLSQI NTNLQVAQQSQQFNNSTRVETQRQVEELKNSLVKLKDELSELQRNKKQLKQEQDALQEQH DQLTGKLHDDPEELSKRLEDCRNDYIQLLQDQATTNNQIVNLNTELKRSQADTTYQNSDV SKQLTDARTELEKLRTEGKQLTVKRQKEKEKFAQVNDQNNDLTKQINQIRQAVNAERSKL EKVEARHEALVNIQKRHEGYYYGVRNVLNHLSDFPGVIGAVGELITFPVELEAAMTTALG GGVQDLITESRVSARDAINQLKRSRSGRATFLPLDGLRQYTIPQSTITTLQSFSGFKGVA SDLVESKADQDITAAINYLLGSVIIVDTIDSAMSISRRVNRYRIVTLDGDVISPGGSMTG GQRNQRNNSPLQTATEINQLEKQLQTLRQNLAEDQERLDELVTQGEKVAAKLQQLRDTLQ ETNQAINEAAISFQNQEKEVKRLTDANSLYKSRVKEQQDRIAALKKEITQANDQQEQLAK QNEVQKGKMNDLQEKIKNFNSLSQRVQEELSKLDPQIAVYTNKLENLASQEKEKNIQITN NQKQTDSLEQKLTELSQNGELSVKKNSDLQTQKAEIKQKNETLQKKLNELSAQLGQVDAQ INQLDQVASRNYDLRKDAAIEQEDYSVKIAKFNSAIDQRLSTLSEEYALTFEAALEQAEG ENTEEKRNELAKSVKLHHMSIEDIGQVNLDSIQEYEDVKKRYDFLNGQQNDLLKARDDLE KSMNELDEEVKTRFKSTFNQVASSFKSIFPVVFGGGKARLELTEPNNLLETGIEIIAQPP GKKQQRLSLLSGGERALTAITLLFAMLQVNPVPFCVLDEVEAALDDANVTRFAQFLLKYD MKTQFIVITHRRGTMRQADQLYGVVMQESGVSQVLSVSLKEMKNKNEVK >gi|227861543|gb|ACKR01000192.1| GENE 7 9463 - 10152 637 229 aa, chain - ## HITS:1 COG:SPy0531 KEGG:ns NR:ns ## COG: SPy0531 COG0571 # Protein_GI_number: 15674631 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Streptococcus pyogenes M1 GAS # 10 229 8 229 230 199 51.0 2e-51 MVSTKFLKKLKDDYNIEFNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAV SNYVYLHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLL EDVFEAFNGALFLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIE YTVISESQLPSHFVVELKINGKVESKGEGHNKKAAEQQAAKFALQKLEK Prediction of potential genes in microbial genomes Time: Wed May 25 06:49:48 2011 Seq name: gi|227861495|gb|ACKR01000193.1| Lactobacillus crispatus JV-V01 contig00209, whole genome shotgun sequence Length of sequence - 44158 bp Number of predicted genes - 47, with homology - 47 Number of transcription units - 16, operones - 11 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1632 2077 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 1765 - 1824 8.1 - Term 1694 - 1749 5.8 2 2 Op 1 . - CDS 1834 - 1968 65 ## lhv_2929 oligopeptide ABC transporter substrate 3 2 Op 2 3/1.000 - CDS 1965 - 2582 618 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 2624 - 2683 1.5 4 3 Tu 1 5/1.000 - CDS 2762 - 3574 721 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 3689 - 3748 9.4 - Term 3726 - 3763 3.1 5 4 Op 1 49/0.000 - CDS 3786 - 4703 1019 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 6 4 Op 2 6/0.000 - CDS 4718 - 5677 1246 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 7 4 Op 3 44/0.000 - CDS 5680 - 6666 742 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 8 4 Op 4 . - CDS 6670 - 7686 1078 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component - Prom 7743 - 7802 9.6 - Term 7752 - 7791 3.1 9 5 Op 1 3/1.000 - CDS 7805 - 8047 387 ## COG0236 Acyl carrier protein 10 5 Op 2 . - CDS 8078 - 9079 1262 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 11 5 Op 3 4/1.000 - CDS 9099 - 11135 1912 ## COG1200 RecG-like helicase 12 5 Op 4 9/0.000 - CDS 11138 - 12799 2063 ## COG1461 Predicted kinase related to dihydroxyacetone kinase 13 5 Op 5 . - CDS 12821 - 13183 511 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 13216 - 13275 7.6 + Prom 13207 - 13266 7.4 14 6 Tu 1 . + CDS 13351 - 13536 316 ## PROTEIN SUPPORTED gi|227878875|ref|ZP_03996780.1| ribosomal protein L28 + Term 13545 - 13587 4.9 - Term 13599 - 13644 5.2 15 7 Tu 1 . - CDS 13653 - 13859 288 ## LBA1313 hypothetical protein 16 8 Op 1 6/0.000 - CDS 13995 - 14669 534 ## COG1564 Thiamine pyrophosphokinase 17 8 Op 2 10/0.000 - CDS 14669 - 15319 766 ## COG0036 Pentose-5-phosphate-3-epimerase 18 8 Op 3 7/0.000 - CDS 15332 - 16222 656 ## COG1162 Predicted GTPases 19 8 Op 4 17/0.000 - CDS 16223 - 18253 1811 ## COG0515 Serine/threonine protein kinase 20 8 Op 5 3/1.000 - CDS 18243 - 19049 641 ## COG0631 Serine/threonine protein phosphatase 21 8 Op 6 20/0.000 - CDS 19003 - 20364 1061 ## COG0144 tRNA and rRNA cytosine-C5-methylases 22 8 Op 7 4/1.000 - CDS 20315 - 21241 961 ## COG0223 Methionyl-tRNA formyltransferase 23 8 Op 8 3/1.000 - CDS 21272 - 23671 1685 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase - Term 23678 - 23715 7.1 24 9 Op 1 25/0.000 - CDS 23722 - 23946 380 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 25 9 Op 2 . - CDS 23952 - 24566 597 ## COG0194 Guanylate kinase - Prom 24590 - 24649 5.3 - Term 24634 - 24669 1.0 26 10 Op 1 . - CDS 24674 - 25111 412 ## COG4405 Uncharacterized protein conserved in bacteria 27 10 Op 2 . - CDS 25104 - 26786 1751 ## COG0497 ATPase involved in DNA repair 28 10 Op 3 3/1.000 - CDS 26797 - 27609 777 ## COG1189 Predicted rRNA methylase 29 10 Op 4 . - CDS 27610 - 28479 1001 ## COG0142 Geranylgeranyl pyrophosphate synthase 30 10 Op 5 . - CDS 28482 - 28724 338 ## LCRIS_01339 exodeoxyribonuclease VII, small subunit 31 10 Op 6 7/0.000 - CDS 28705 - 30072 1108 ## COG1570 Exonuclease VII, large subunit 32 10 Op 7 4/1.000 - CDS 30059 - 30910 966 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase - Term 30921 - 30960 3.5 33 11 Op 1 10/0.000 - CDS 30965 - 31360 518 ## COG0781 Transcription termination factor 34 11 Op 2 4/1.000 - CDS 31360 - 31791 511 ## COG1302 Uncharacterized protein conserved in bacteria 35 11 Op 3 10/0.000 - CDS 31810 - 32379 751 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) - Prom 32399 - 32458 6.9 36 11 Op 4 . - CDS 32460 - 33569 1223 ## COG0006 Xaa-Pro aminopeptidase - Prom 33597 - 33656 8.9 - Term 33625 - 33670 2.0 37 12 Op 1 32/0.000 - CDS 33686 - 33982 513 ## PROTEIN SUPPORTED gi|227878898|ref|ZP_03996803.1| ribosomal protein L27 38 12 Op 2 . - CDS 33995 - 34306 525 ## PROTEIN SUPPORTED gi|161507744|ref|YP_001577705.1| 50S ribosomal protein L21 39 13 Op 1 . - CDS 34465 - 35301 678 ## COG1284 Uncharacterized conserved protein - Prom 35324 - 35383 4.6 40 13 Op 2 . - CDS 35385 - 36761 1685 ## LCRIS_01349 V-type sodium ATP synthase subunit - Prom 36787 - 36846 5.5 41 13 Op 3 . - CDS 36852 - 38570 1167 ## COG3666 Transposase and inactivated derivatives - Prom 38625 - 38684 5.5 - Term 38632 - 38675 2.5 42 14 Op 1 . - CDS 38729 - 38911 123 ## LCRIS_01350 putative protein without homology 43 14 Op 2 . - CDS 38935 - 39249 311 ## LCRIS_01350 putative protein without homology - Prom 39347 - 39406 6.0 - Term 39370 - 39399 0.5 44 15 Op 1 . - CDS 39423 - 39602 374 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog 45 15 Op 2 . - CDS 39650 - 41443 1727 ## COG4907 Predicted membrane protein 46 15 Op 3 . - CDS 41447 - 42322 785 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 42399 - 42458 8.1 - Term 42417 - 42460 7.1 47 16 Tu 1 . - CDS 42482 - 43720 1402 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) - Prom 43783 - 43842 5.0 - TRNA 43983 - 44056 71.7 # Arg TCT 0 0 Predicted protein(s) >gi|227861495|gb|ACKR01000193.1| GENE 1 3 - 1632 2077 543 aa, chain - ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 1 542 1 552 600 360 40.0 5e-99 MKKAKLFAGITLLSGVALTLAACGKSESHSDESKTASKFKEAVPTKATKNGGTVKVAVEA DTPFTGIFNDELSTSATDTEVMQYGAESLFGTDDHYVFNDKGAATIKVDQKAKTVTVEIK KGVKWSDGKQVTAKDYEYAYEIIANKDTKSQRYTSSLADLEGLQEYHEGKSKTISGFEMP DGENGRKAVLHFKTMKPGMNTSGNGYIWEAAAPYHYLKDVKFKDLMSSDKIRKKPLFFGA YKLQKVVRGQSVTWVPNEYYYKGKPKLSKITATVINPNSVAQSIKSRKFDVTQVINSQWK NIKDTKGVNFIAKIPLQYSYLGFKVGKWDAKKGENVMDKNSKMNNKALRQAIGYGMNVNQ VYKRYSFGLSFRIPTLIPKQFGDYFDKNIKGYTYNIKKGNEILDKAGYKKKGTYRVQPNG KPLTIHLAAMTGSSTAEPIVQNYIQQWKKMGLNVKLTSGRLIEFNSFYDKVQNDDPSVDM FIGAWSLSSEPSPNDLYSEKASMNYSRFVTHENTKLLDEMDSQKAFNHKYRVKKFHEWQK YMF >gi|227861495|gb|ACKR01000193.1| GENE 2 1834 - 1968 65 44 aa, chain - ## HITS:1 COG:no KEGG:lhv_2929 NR:ns ## KEGG: lhv_2929 # Name: not_defined # Def: oligopeptide ABC transporter substrate # Organism: L.helveticus # Pathway: ABC transporters [PATH:lhe02010] # 1 44 540 583 583 79 90.0 3e-14 MNDEAYVVPTTNAYSIQAVNSKITGFSLKPSDANSLWYKVGYAK >gi|227861495|gb|ACKR01000193.1| GENE 3 1965 - 2582 618 205 aa, chain - ## HITS:1 COG:BH3636 KEGG:ns NR:ns ## COG: BH3636 COG0747 # Protein_GI_number: 15616198 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Bacillus halodurans # 2 204 355 559 610 174 40.0 1e-43 MNPKAKMNNKSLRQAMAYAMNIDAVTKRYTQGLSFRIPTLIPEQFGQYFDKNVKGYSYNL KKANQLLDKAGYKKKGTYRVQPNGKPLTIHLAAMTGSSTQEPIIRNYIQQWKKIGLNVKL TGGRLIEFNSFYDKVQNDSKDVDVFMAAWSLSSEPSPNDLYNEKAPFNFTRFVTKKNSQL LEEMDSQKAFNTKYRVDKFHEWQKT >gi|227861495|gb|ACKR01000193.1| GENE 4 2762 - 3574 721 270 aa, chain - ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 2 249 3 254 600 181 44.0 1e-45 MKLSRVLGSVGVVSAAALALVACGKSSNNNAGAKDAKKFKETTPVKAVKKGGTLSYAEET DTPFTGIFNNELSTSAIDTDVAQFGNESLFDTDDSYKINSKGPATFKLDRKTKTITIEVK KGVKWSDGKQVTAKDVEYEYEVMANKGTKSQRYTASLQNIVGVTEYHDGKAKTISGIDMP DGANGRKVVIHFKEMKPGMLQSGNGYFLETASPYHQLKRIPFNKLESSDAVRKNPLFFGP YKISKIVRGHGYLTNTTGEVSQILIKLLFQ >gi|227861495|gb|ACKR01000193.1| GENE 5 3786 - 4703 1019 305 aa, chain - ## HITS:1 COG:BH3637 KEGG:ns NR:ns ## COG: BH3637 COG1173 # Protein_GI_number: 15616199 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 21 303 19 300 302 261 49.0 2e-69 MADKKEKATKEDAKQKATLPPSGFKVAMHEIVRSKSALTALIIIIVILLFTFGGSLFLNR AQVTEMNIADSYYGWGEAGHLLGTDDGGRDILKLLIMGGRNSIMIGISVTVITEIVGLVV GLVSGYFGGAIDSVIMRIVDFIQILPQMPIIIVLTTVIPNYNAVTLVFLIAMFGWTVTAR YFRSFVLSQRGRDYVLASKTSGSSNFKIMFREVLPNITSTIIIDVVLSIAGNIGIETSLS FLNYGLPSTTPSLGTLIGFANDPVNVINRPWLWLPATILLLVISLSINYVGQALQRAGDA RQREN >gi|227861495|gb|ACKR01000193.1| GENE 6 4718 - 5677 1246 319 aa, chain - ## HITS:1 COG:L91252 KEGG:ns NR:ns ## COG: L91252 COG0601 # Protein_GI_number: 15673821 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Lactococcus lactis # 1 319 1 319 319 346 57.0 3e-95 MWKTILRRLLIMIPQLIILSLLVFLLAKMMPGDPFSGSINPNTDPKQIEALKRAAGLFDP WYVQYFRWVGNLFHGDLGTSYIQHVPVTSLIADRANNTFWLSLLTTILTYSIAIPLGITS GRHQDEWQDTSVRIFNYITLATPGFVFYILGLWLFGFTLGWFPISGSVSASASGFWGVLG SRIYHMILPAILYALITTTGTVQYLRTGIVDNKVEDYVRTARSKGVPENVVFNKHILRNS LLPIAAFLGNTITGLLSGSMIIESVFSYPGMGKLFLDSIGQRDYTTLTALILIFGILTLI GNLLSDIIMSIIDPRIRIQ >gi|227861495|gb|ACKR01000193.1| GENE 7 5680 - 6666 742 328 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 2 269 8 275 329 290 51 1e-77 MAKEIIQIKDLKVYYPIRSGFWNRITDYVRAVDGVNFSINEGETYGLIGESGSGKSTTGK AIVGVEKVTGGQIMYKGLDVTKASNRKKLDYNKDVQMIFQDSMSSLNPRKRIEDIIAEPI RNFENLTTDQERDRVQELLDIVGMPSDAIYKYPHEFSGGQRQRIGVARAVATNPKLIVAD EPTSALDLSVQAQVLNFMKHIQQQYNIAYLFISHDLGVVKHMSENLAIMHRGRLVEIGTR DEIYKHPMHIYTKRLLSAIPQVDVEHREEHKKHREQVEKEFEENQSKWYDKDGRVYPLQQ VAPKHWVALPKDMAHEAKLEELEEKESD >gi|227861495|gb|ACKR01000193.1| GENE 8 6670 - 7686 1078 338 aa, chain - ## HITS:1 COG:BH3640 KEGG:ns NR:ns ## COG: BH3640 COG0444 # Protein_GI_number: 15616202 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Bacillus halodurans # 8 329 6 327 340 419 61.0 1e-117 MEKQSDLLLDIQHLHTAYRLQGKFYDAADDVNLTLKRDEILAIVGESGCGKSTIASSIIG LYDHKNTKVTGDILYNELNLVGLNESLFNKIRGDKIGMIFQDPLASLNPLMRVGDQVAET LYYHTDMDEKARHARVIELFNQVGMPKPEEMYEMYPHELSGGLRQRVVIAMAIACKPEVI IADEPTTALDVTIQAQILDLLEDIQKQSHSGIILITHDLGVVAETADEVAVMYAGQIVEK SDVKTIFENPLHPYTRSLLNSMPQSDDTDEDLHVIHGTVPSLKNMPRTGDRFAARIPWIP ASAHEEEPKVHEVAPGHWVRCTCWKSFHFKNEKTASGE >gi|227861495|gb|ACKR01000193.1| GENE 9 7805 - 8047 387 80 aa, chain - ## HITS:1 COG:DR1942 KEGG:ns NR:ns ## COG: DR1942 COG0236 # Protein_GI_number: 15806940 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Deinococcus radiodurans # 7 79 38 110 110 70 47.0 1e-12 MSEEEIFNKIKDMIADNFDVDKDKITEDTNFMNDLDADSIDLVEFILQLEDEFGAEIPDD EAEKIKTIGDAVSYIKSHQG >gi|227861495|gb|ACKR01000193.1| GENE 10 8078 - 9079 1262 333 aa, chain - ## HITS:1 COG:SP0037 KEGG:ns NR:ns ## COG: SP0037 COG0416 # Protein_GI_number: 15899983 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Streptococcus pneumoniae TIGR4 # 1 331 1 328 330 307 50.0 2e-83 MRTIAIDAMGGENAPDAIVKAVLQAKTGMPETKFLLFGDKEALRKLIPEDQINDQLGVVP TTEVIADEDEPVKAIRKKKDSSMVVAANFVKEGKADALLSLGNTGALLACGIFIIGRIKG IVRPGLMPTLPVQNSDDGFNMVDVGANAKSKPEYLLQWAEMASYYAEKIRGIKNPRVMLL NNGAESDKGDDVHQKAYELLKESNLNFLGNIEGNELLLGKADVVVTDGFTGNAVLKNIEG TSSVLLHLLKDSLLNGGVMTKLGALMVKGSLSSLKSKFDTAKYGGAVLLGVNAPVVKTHG RSNERPIYFTLKQVDKMVKEKLVADFRDEFAEK >gi|227861495|gb|ACKR01000193.1| GENE 11 9099 - 11135 1912 678 aa, chain - ## HITS:1 COG:SP1697 KEGG:ns NR:ns ## COG: SP1697 COG1200 # Protein_GI_number: 15901531 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Streptococcus pneumoniae TIGR4 # 6 672 3 668 671 607 48.0 1e-173 MIDNALFAPVTDLKGVGTKTTAALGSLGIYSIYDLLFYFPFRYDELQTLPLDQIMDGQKV MLKGIVATEAFVSRFGYKKTRLSFKMRIDHDVIMVNFFNQPWLKNKIEIGQEVAIYGKYN VARQSLTAFKFVAAKENDSGMAPIYPVNRHVKQKKLVDLINVAIDDFIDQVQDIVPEKLR QEYRLLKDQVIIEKMHHPKNSHEAELAKRSAIFREFFIFELQLALLTRNDGKQMGYAKKY DLTEIAQLTKSLPFELSDDQKHVVNEIFADMHSDGQMRRLLQGDVGSGKTVVAVYAIFAA ITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTKTLERREIYRELTDGTIN VVIGTHALIQDSVIFKKLGLVIIDEQHRFGVGQRQALINKGDQPDILAMTATPIPRTLAL TVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQLNQGFQIYAVTPLITESET LDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFAAGEIDILVTTSVIEVGVD VANANMMVIYNADRFGLSQLHQLRGRIGRGQTQSYCVFLADPKTDSGKARMKIIASTNDG FKLAEEDLKMRGEGDLFGKAQSGLPEFRVGDVVNNYDTLVVAQKEARALVAADPDLSDPG HKALKQVLEYKQLEQNRI >gi|227861495|gb|ACKR01000193.1| GENE 12 11138 - 12799 2063 553 aa, chain - ## HITS:1 COG:SPy1885 KEGG:ns NR:ns ## COG: SPy1885 COG1461 # Protein_GI_number: 15675702 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Streptococcus pyogenes M1 GAS # 3 553 1 554 554 561 55.0 1e-159 MVLNEIDSKQFRDMVRVATHRIGKNAEFVNSLNVFPVPDGDTGTNMNLTIESGAKAVSEN PSTSVSDLTESLAKGMLMGARGNSGVITSQLFRGFYKATQGMKTLTAQELANAFSNGVAT AYKAVMKPVEGTILTVARVAAQAGATKANDTDDVTEVMKAVVEGAKKALKSTPDLLPVLK QVGVVDSGGQGLLFIYEGFLEGLMGENFADQYQPDENEMDEMINAMHHQSSVQSQLATQD IKNGYCTEIMVDLDADVPNKKKFDLEEFRKHLSGLGDSLLAVSDGEIAKVHVHTEHPGDV FQYGSQFGQLGKIKIDNMRIQHESIVDQDEEQQEAVDFAVIAVASGNGIRKLFESEGVNR IISGGQTMNPSTQDFIDAIKKSGAKKAIVLPNNGNIVMAAKQAAEVSDIPVGIVPTKTIS QGLTAMLSFNPDASVDENVEAMTEDLDTVVSGEVTQATRDTEIDEVEIHKNDYLGIVDGK IKVDNADLIKTTVDMIEKMLDEDSEIITIMFGRDASEEQAQEVVEQLEAKHDDLEFEIHD GGQPVYHFLVSVE >gi|227861495|gb|ACKR01000193.1| GENE 13 12821 - 13183 511 120 aa, chain - ## HITS:1 COG:SPy1886 KEGG:ns NR:ns ## COG: SPy1886 COG1302 # Protein_GI_number: 15675703 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 120 1 120 121 121 62.0 3e-28 MAVKIKTKDGLIDISNGVIATVVGGAATSNYGVVGMASKNAIRDGFDGILNRANYKRGVV VKSEDNEITVDVYIIVGYGLKISEVSKNVQDSVKFNLKNQLGIDTKAVNVIVQSVKVLDE >gi|227861495|gb|ACKR01000193.1| GENE 14 13351 - 13536 316 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227878875|ref|ZP_03996780.1| ribosomal protein L28 [Lactobacillus crispatus JV-V01] # 1 61 1 61 61 126 100 3e-28 MAKDYVTGKKTTFGNKRSHSLNSTRRAWKPNLQKVRILVDGKPKRVWVSTKALKSGKVTR A >gi|227861495|gb|ACKR01000193.1| GENE 15 13653 - 13859 288 68 aa, chain - ## HITS:1 COG:no KEGG:LBA1313 NR:ns ## KEGG: LBA1313 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 68 33 101 101 114 94.0 2e-24 MHKNHVHIFDKKKKEVATINGLVRNVTYQDLGLPTKLGEMITEYAYTPIDERMADEIPDD DKHHNIMK >gi|227861495|gb|ACKR01000193.1| GENE 16 13995 - 14669 534 224 aa, chain - ## HITS:1 COG:L76216 KEGG:ns NR:ns ## COG: L76216 COG1564 # Protein_GI_number: 15673806 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Lactococcus lactis # 26 220 19 210 211 130 37.0 2e-30 MKAYALLGGPTELWPEDIEEKLAQADLVIGVDRGALFLEELGIIPDVAVGDFDSLHENDL SQIESNVQDIRYSNPVKDWTDSELMLQIAFEDYHVDELVIFGATGGRLDHFLINLLMLLN PEMRLYAKKVTLIDQQNLICFFNAGTHVVQKRKNYSYIGFAALTAIKDFNIIGARYELKH YSGNYPRVFSSNEFLPNSNEFRISLQNGMIAAIYSKDINRFHDL >gi|227861495|gb|ACKR01000193.1| GENE 17 14669 - 15319 766 216 aa, chain - ## HITS:1 COG:lin1932 KEGG:ns NR:ns ## COG: lin1932 COG0036 # Protein_GI_number: 16800998 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Listeria innocua # 3 215 4 216 218 176 43.0 3e-44 MMIAPSILNANNIDLKNDIENAVQAGISRFHIDIMDGHFVPNLSFGPQLIKDFKREFPMT DAEIHLMSDAPDKLVPAFVSAGADLVELHYEAMDKPKLYYWFDYLASNGVDAALAISPDT PVEVVEPYLPLLKQVLVMTVKPGFGGQSFLPESVSRIKSVREIVGSDFDIEVDGGINDQT IKLAENAGANIFVVGSYLYENGDVGSQVHKLEKIIK >gi|227861495|gb|ACKR01000193.1| GENE 18 15332 - 16222 656 296 aa, chain - ## HITS:1 COG:L187815 KEGG:ns NR:ns ## COG: L187815 COG1162 # Protein_GI_number: 15673908 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Lactococcus lactis # 3 290 2 296 307 234 41.0 2e-61 MKLAQGTVVGLIAGYYDVETAAGIVRTRARGVFRQKKQKPAVGDHVEIQIDDKGMSYLVK ILPRINRIGRPAVANVSHVLLVISAVEPDFSVELLDRFLTFFSWQKVGVTIYLSKADLLS EAKLNTIKQALAYYQKIGYLVFTDYHEMQIQIPKMIEKNQIWTLAGQSGAGKSTLLNHLK KDANQATGAISTSLNRGKHTTRKVELFKLGAGFLADTPGFSSIDLTPIKLNELCNYFVEF KKASIHCKFRGCQHLQEPGCEVKKLLEAGEILESRYEDYLAMRTEISEGRIPEYLK >gi|227861495|gb|ACKR01000193.1| GENE 19 16223 - 18253 1811 676 aa, chain - ## HITS:1 COG:lin1934_1 KEGG:ns NR:ns ## COG: lin1934_1 COG0515 # Protein_GI_number: 16801000 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Listeria innocua # 5 318 4 321 342 342 56.0 2e-93 MIDKGYLLGERYRIIDTLGEGGMANVYLAEDIILQRKVAVKILRLDLQNEPQTQARFQRE ALATSELSHPNIVSVLDVGTDHGLPYMVMEYVDGPNLKEYIQKNSPLDLNEIIRIMDQIL SAVALAHKHNVIHRDLKPQNILMDKRGNIKIADFGIAVALNQSSITQTNSVMGSVHYMSP EQTRGGMVTKQSDIYSLGIILYELITGTVPFNGDTPVAIALKHAQEPIPSIRKKDSSVPQ ALENVVLKATAKDPRDRYATAQEMKADLDSSLDPERADEPVFVPYHGNNDDKTIVLPGFK PQKEEKEVVEPAKTESVESSKPVKKKTFLQNVKSHKWWWLISIIAAGLIIFMMIFALSGT GNKRQDVNIPDVTNIAEKAAESKLEAAGLQVGKIIRRQSDDIKKGRVIATKPTAGNSLER GKSVDLIVSSGSSMVKVPDMVGKNYAEAAEKLENMGFDVVREDQYSNKVDENQVISQSIA AGVEVKPTQTTITLIVSRGKQARSHSNMVTLKDLSNYSLKSAQDYAKEHGLTLQINQEYS DDVEKGLIISMEPGPGTKVERGSTVTIKVSKGPKEDKETTVTKTFTVNYVGDDLSKSEKP DNDKGSNNSESESVNGKGDHVQIYIKDDDHSLNNIYRDLYIKHDMSFSIPFNIREGSGQL KVVRNGDTVLNEKVTK >gi|227861495|gb|ACKR01000193.1| GENE 20 18243 - 19049 641 268 aa, chain - ## HITS:1 COG:SPy1626 KEGG:ns NR:ns ## COG: SPy1626 COG0631 # Protein_GI_number: 15675502 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Streptococcus pyogenes M1 GAS # 19 264 1 244 246 191 42.0 1e-48 MAMMDFSLLNLSYEVRFLIETAYASSIGKVRKSNQDFVKVFKNQKGIVLAIVCDGMGGHQ GGDVASTMAVTHLGHNFSMTDFADANLAHKWLDVQLNSENETILKTADKFPDLNGMGTTI VLAFAFDKNALIAHLGDSRAYSYSEGKFVQLTEDHSLVNELVKMGQITKEQAKHHPQKNI ITQALGVSSTIDPEFDEIKMGGNDIILLCTDGLTNSLSDPQIQQILATKELSLRERCNKL ISEANRLGGGDNITVCLIWNKEDESSDR >gi|227861495|gb|ACKR01000193.1| GENE 21 19003 - 20364 1061 453 aa, chain - ## HITS:1 COG:SP1734 KEGG:ns NR:ns ## COG: SP1734 COG0144 # Protein_GI_number: 15901566 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pneumoniae TIGR4 # 17 450 5 433 437 334 44.0 2e-91 MVKVVSLSQVKKLSIDKSARAVSLETLIKVLDQGSYSNISLNNSLKHSNLSIADQNLATN IVYGTIQYRLFLEYQLKGLVRTKLTEKYIKPLLLMSLYQLIFLDKVPDRAVLDEANKLAK QYGKRHSAGFRLVNGILRSFTRRGVILPAENNPVKYLSVKESVPEWLVQYLIDNWGLDKA KSVLNSINEPAKNSVRISKLADKEQVFAQLERDNYQPQWSKLSSDDVILSHGGISESDLF EEGKLTIQDEAASLVVEAFDFEQDEHVLDACSAPGGKTVQIAESIVNGDVTALDIHDKKL RLVRDNAQRMHVANKVKTKACDARKATEIFAAGEFTKILVDAPCSGLGLLRRKPEIRYTK RQQDLQNLQKIQLAILTAVSSLLKKNGELVYSTCSISMEENEEVVKKFLQAHPDFELVPF KLTKLESKTGMLKIMPDLDGNDGFFIAKFKLRG >gi|227861495|gb|ACKR01000193.1| GENE 22 20315 - 21241 961 308 aa, chain - ## HITS:1 COG:SP1735 KEGG:ns NR:ns ## COG: SP1735 COG0223 # Protein_GI_number: 15901567 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 307 7 311 311 295 53.0 1e-79 MGTPKFSVPVLEGLIDEGYEIKAVVTQPDKKVGRKQKITKSPAKIAAEKHDLPIFQPVKL SGSDEMQKLIDMHADLIVTAAYGQFLPTKFLNSVKIAAVNVHGSLLPKYRGGAPIQYSLI NGDKETGITIMEMVKKMDAGDIYAQEAIKIEPDDNAGTLFSKLSIVGRDLLLKTLPAIID GSIKKVPQDPEKVVFSPNITKEQEKLNVDMTAEEVNDMIRALNPDPGAYLMIEGKRFKIW KAEIASDSSSLNAGSVVANKGRFAISFADNSVLNLLEVQPSGKKRMDIKSFLNGQGSKFV PGEEIVDR >gi|227861495|gb|ACKR01000193.1| GENE 23 21272 - 23671 1685 799 aa, chain - ## HITS:1 COG:SPy1629 KEGG:ns NR:ns ## COG: SPy1629 COG1198 # Protein_GI_number: 15675505 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Streptococcus pyogenes M1 GAS # 2 799 4 794 794 749 48.0 0 MIAQVIVDVAARQTDRIFEYHIPTELEKDIAIGSRVVVPFGPRKVQGFVVGITDQSEFKG KLKDLLVVVDEMPPLTPELVKLSADLAKNIFSYRIKILQAMLPWVMRANYRKLLVPANDR AAKMPLFQGDPIDLNKITDLAEIKQFRKLLQDDQAKIEYVVENRAKKKKENQYELALKKE EYPKIYNTLRQNAVKQKKLLMDIIDNAADYPKSQSQLEKQLGLTAASLNSAITKGWLNKK SVEVYRDPLSGFDDGEHKTAVTLNGEQQGALNQITQAIEQRQAETFLLEGITGSGKTEVY LHAISKALKQGRNALMLVPEISLTPQMVRQVKARFGQEVAVLHSALSEGEKYDEWRRIRR GETKVVVGARSAVFAPLDNIGLIVIDEEHESSYKQETDPRYNARDVAIWRSKFHNCPLVL GSATPSLSSRARAQKNVYHLLRLTERANQKKLPKVNLIDLKHVQFAGGQFDLSVELVDAI KKRLAKKEQVILMLNRRGFANFMLCRECGFVLKCPNCDVSLNLHKDTNSMQCHYCGHTEP VPTRCPNCQSSQIRFLGAGTQKVQEELEELLPGARILRMDVDTTRRKGSYKKILDAFGAH EADILLGTQMIAKGLDFPNVTLVGVINADTGLWLSDYNASEKTFELLTQVAGRAGRADKE GEVLIQTYNPEHYAIQLAQTQDYERFYGYEMNMRHAGNYPPYFYTVLISIAAKKEQNAAR EAFRIKRYLNEHLHVPTIILGPTPSAISRVKNKYYYQILVKYKKEPNLNELLHHVQDSAQ EAKKYGLSIFIDNEPERIM >gi|227861495|gb|ACKR01000193.1| GENE 24 23722 - 23946 380 74 aa, chain - ## HITS:1 COG:SP1737 KEGG:ns NR:ns ## COG: SP1737 COG1758 # Protein_GI_number: 15901569 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Streptococcus pneumoniae TIGR4 # 6 65 4 62 103 61 60.0 4e-10 MRITYPSIDKLLSRVDSRYSLSVLAAKRAHELEAGDPPTLEHFKCDKAVGKALEEIAAGK VTVDPAHAEVNLED >gi|227861495|gb|ACKR01000193.1| GENE 25 23952 - 24566 597 204 aa, chain - ## HITS:1 COG:SP1738 KEGG:ns NR:ns ## COG: SP1738 COG0194 # Protein_GI_number: 15901570 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 201 1 201 208 226 56.0 2e-59 MADKGLLLVLSGPSGVGKGTVKSAIVENKVFPFEYSVSMTTRQPRPGEVNGQDYFFVSED RFQEAIKNGELLEYNKYVGHYYGTPLAPVKKMLHDGKDVLLEIDVNGAQKVREKMPDGVF IFLTPPDLHTLHLRLEHRGTESEDVIRGRIKQARNEILEMEDYDYAVVNDTVANAVDHIK AIVDAEHVSVKRVIDDYRKMVKED >gi|227861495|gb|ACKR01000193.1| GENE 26 24674 - 25111 412 145 aa, chain - ## HITS:1 COG:lin2984 KEGG:ns NR:ns ## COG: lin2984 COG4405 # Protein_GI_number: 16802042 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 3 144 7 151 153 116 43.0 2e-26 MTSISKFWRDFCVEHQVSPTALEGAFAFGANSRDADILSDLVKSGIKTATTSLYSAQEDV PVVGMYAIVLNGRNEPVCVIQNKTVEIMPFKNVSAEHAYLEGEGDRSYESWRKVHEKFFA RECQELGREFTDETEVVCETFEKII >gi|227861495|gb|ACKR01000193.1| GENE 27 25104 - 26786 1751 560 aa, chain - ## HITS:1 COG:SP1202 KEGG:ns NR:ns ## COG: SP1202 COG0497 # Protein_GI_number: 15901065 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Streptococcus pneumoniae TIGR4 # 1 556 1 552 555 394 40.0 1e-109 MLVELDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRGQKEMIRSGEP KSIITGLFELDNQKEKIAELCDQYGLPHDDDQLVISRELAVKGRNVVRINGQLTTINVLR EIGNYLVDIHGQHDQQILMDQDRQIDLVDNYAPDSFKTDLTTYQKDFTEWQKLTSQLRHL RQDAQELAQKQDILQFQNNELEAADLEDPQEDEKLEEEYNELNNYQKIADTANYFMQLYD DDEHGIATLLGDAQNAATDLTEFGSKFKDFAKTVDDGVYALNDARSELSNLMDAMDFDEE RFQYVTNRLDTLNSLKKKYGPTLADVFAFYQKVQKELSQFETGGLDEEKLQAEVAKIEER MTQEARDLHLIREKVAHSLEEQIKQELADLYMEKARFSINFDETKTFTDKGTDAIVFLIA PNPGEDLMPLVKIVSGGEQSRLILALKAIFSRVEPVGTMIFDEIDTGVSGRVSAAIGKKM HSIGRNKQVIAITHSPQVAAAGDQRYLVAKQVKDGSTFTQIGPLSKEETITAIAQMMAGQ DVTDAAKKNAADLIKSIKDD >gi|227861495|gb|ACKR01000193.1| GENE 28 26797 - 27609 777 270 aa, chain - ## HITS:1 COG:lin1403 KEGG:ns NR:ns ## COG: lin1403 COG1189 # Protein_GI_number: 16800471 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Listeria innocua # 1 253 3 254 274 292 57.0 6e-79 MTKQRADILLAEQGLFHSRSAAQRAIMAGLVSDHNHQRIDKSGTKFPEGEKFYVKDDGKK YVSRGGFKLEKALKVFNIDLTDKICLDIGASTGGFTDVALQNGAKMVYALDVGYNQLAWQ LRDDPRVVVMEKQNFRYSKPEDFDQGLPDFAMTDVSFISLDLIMPPMYAILKDQCDAVCL IKPQFEAGPENVGKHGIVHDHEVHKAVIEHTMRKALETGFNVLGVDYSPIKGGKGNIEFL IYLQKDEANGGRNLWQGSPAEVVERAISGL >gi|227861495|gb|ACKR01000193.1| GENE 29 27610 - 28479 1001 289 aa, chain - ## HITS:1 COG:alr0213 KEGG:ns NR:ns ## COG: alr0213 COG0142 # Protein_GI_number: 17227709 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Nostoc sp. PCC 7120 # 30 270 43 287 309 179 42.0 8e-45 MTAFTYFKDQWTPIIDDYLAKHLASEVKDQKISQIMAYSVMAGGKRLRPLLFLATLNTLG KKIEEPEVRIACGIELIHTYSLIHDDLPAMDNDDYRRGKLTSHKKWGEAEAILAGDALLP MGIQWIAEGSNSAQLVELITKAVGPNGMVGGQYLDIDSTNNASVSGDAKFINKMEWLKTG CLIQASVEMAAIFAKASDIEKVKLIDFAKVFGRSYQIYDDLVDVVETSEEAGKATHKDEA EGKNNTLTLLGIDQSRKELTDLIKQAQDDLHGLNGEVLTGFLDLYQKVL >gi|227861495|gb|ACKR01000193.1| GENE 30 28482 - 28724 338 80 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01339 NR:ns ## KEGG: LCRIS_01339 # Name: xseB # Def: exodeoxyribonuclease VII, small subunit # Organism: L.crispatus # Pathway: Mismatch repair [PATH:lcr03430] # 1 80 1 80 80 106 98.0 2e-22 MAVKKNNFEEQLTSLEQIVQNLENGNVPLEDALKEFQEGVKISRDLEKKLNSAEETVAKL IDSDGTEHKLDPNNASAPEE >gi|227861495|gb|ACKR01000193.1| GENE 31 28705 - 30072 1108 455 aa, chain - ## HITS:1 COG:lin1398 KEGG:ns NR:ns ## COG: lin1398 COG1570 # Protein_GI_number: 16800466 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Listeria innocua # 1 452 1 450 450 349 42.0 8e-96 MAENKYLTVTDLNYYITQKFKNDPYLHKVFLQGELSNFRYRRNSHQYFSLKDEKSKINVV MFRSFFEKVKFKPEEGMKVYVVGYVSVYGPQGSYQFYAEQMEPAGLGALYEQLKQLQAKL AKEGLFDPAHKKPLPHFPDRIAVVTSASGAVIHDIMVTANRRFPHAEIDLYPAQVQGDTA ADSLIRAMQQIAAQGDKYDVMIIGRGGGSLEDLWPFNEEKVVRQVYAMPMPVISSVGHET DTTLCDLVADARAATPTAAAEYATPNTLDELAHIKQLTSQLVASMQNIIRSKRDRLSRVQ NSVIMREPTRLYDQQIQQVDQLKQRLQNSMQNRVTHSAQSYQLLKQRLFSVSPDKKINQL QQQKQFLQQRMIDNMQHYLKNKRNVFTQVMQQLDDYSPLKTLERGFVYSTNEHGETISSV KQVQKDDRLLLHFKDGQVDAVVTKIKEEQNGSKEK >gi|227861495|gb|ACKR01000193.1| GENE 32 30059 - 30910 966 283 aa, chain - ## HITS:1 COG:BH2784 KEGG:ns NR:ns ## COG: BH2784 COG0190 # Protein_GI_number: 15615347 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Bacillus halodurans # 4 277 5 278 279 278 50.0 1e-74 MGEILDGKVFANELGQNLKEKVKNLKEKGITPHFCVINIGDDPASKIYVRTKKRRAKKMG IIQDIYQMPADTEQAEALALIDKLNADPTINGVMVQLPAPKQIDADELLERIDPNKDVDG LTPANIGRLWMEDHFIEPATAEGIIALLKHYQIKLDGKNVVVVGRSNIVGKPLAALMLEQ NATVTICHLHTQNLGEITKKADIVVSATGQAFLITADMVKDGAVVVDVGMNHVNGKLVGD VDFDNVKEKASYITPVPGGVGPLTVQFLMEAVVKLTRRQNGRE >gi|227861495|gb|ACKR01000193.1| GENE 33 30965 - 31360 518 131 aa, chain - ## HITS:1 COG:SP0433 KEGG:ns NR:ns ## COG: SP0433 COG0781 # Protein_GI_number: 15900351 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Streptococcus pneumoniae TIGR4 # 40 130 47 136 140 61 37.0 3e-10 MNQHESRKVAMQAVYLANQEPDLTAEEVEAKVVATLNLKQLSAYSKKLIEGVLEDRKNLQ SELTSHLKKGWRLERVSQTVVAIMEVALFEINHSDEIDAKAAVNEALNLCDEFAEPKEKP FINGMLANFVK >gi|227861495|gb|ACKR01000193.1| GENE 34 31360 - 31791 511 143 aa, chain - ## HITS:1 COG:BS_yqhY KEGG:ns NR:ns ## COG: BS_yqhY COG1302 # Protein_GI_number: 16079489 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 135 1 135 135 92 39.0 3e-19 MADSSKILLSGEENSEQIKIDPSVLEVILGIAAEKVDGVAGMRGSLKSGLNWVFGREDHG KGVNISVDDDNKLIADIYVYLESGVNVPKVAMTLQKKLKAQLLQMTDLELKAINVHVVGL VFPEDENTDQTTSELFPEDEEEK >gi|227861495|gb|ACKR01000193.1| GENE 35 31810 - 32379 751 189 aa, chain - ## HITS:1 COG:BS_efp KEGG:ns NR:ns ## COG: BS_efp COG0231 # Protein_GI_number: 16079501 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Bacillus subtilis # 3 187 1 185 185 251 66.0 7e-67 MTMISVNEFKNGLTIQYNNDLWRIVEFQHVKPGKGSAFVRSKLKSLRTGAVQEYTFRSTA KVETADIQTKSMQYLYNDGSSYVFMDTSTYDQLAIPNEQIGDEANYLLENMIVNVVMHEG ETLGIQLPNTVDLKVAKTEPNIKGDTSSGGGKPATMETGLVVNVPFFINEGDVLTINTAD GTYVSRANK >gi|227861495|gb|ACKR01000193.1| GENE 36 32460 - 33569 1223 369 aa, chain - ## HITS:1 COG:TM0042 KEGG:ns NR:ns ## COG: TM0042 COG0006 # Protein_GI_number: 15642817 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Thermotoga maritima # 14 363 3 354 359 256 42.0 6e-68 MENRQELLSLINQRIEHVTDLIKEANADALIIFNQANYRYLTNFTGEEAQLILTASGERV LLSDSRFAGQIKAQAPGEMDVVMKHSSDYEELTKALKKMDVKRVLVEGEFVSASEYEKLK QLNPELEFVMVEELVERVRNIKDDLEIAALRKAIDISMESFKGILPMIKPGVKERAIGAK LDYLFKVNGGDGPDFDTIVASGVRSAWAHGVASDKELSEGDMIVIDFGSFYHGYAADITR TVSLGEVDAEMHKIYDIVHEAQRRGIAAAVAGNTGYDVDKAARDYITEQGYGQYFGHGIG HGIGLEIHELCQPALPFRTTKLVNNMVHTVEPGIYLPDKGGVRIEDDILVHDQTPETLST LPKDELISL >gi|227861495|gb|ACKR01000193.1| GENE 37 33686 - 33982 513 98 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227878898|ref|ZP_03996803.1| ribosomal protein L27 [Lactobacillus crispatus JV-V01] # 1 98 1 98 98 202 100 4e-51 MNMNILGMKLYAHHKGGGSTANGRNSAGRRLGAKAGDGQTIHAGTIIYRQRGTKIHPGKN VGQGGDDTLFALVNGVVKFERLGKYKKQVSVYPAEEAK >gi|227861495|gb|ACKR01000193.1| GENE 38 33995 - 34306 525 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507744|ref|YP_001577705.1| 50S ribosomal protein L21 [Lactobacillus helveticus DPC 4571] # 1 103 1 103 103 206 100 1e-52 MYAIIKTGGKQYKVAEGDSVFVEKLDAEEGSSVTFDEVILVANGDDVKVGTPLVDGAKVT AKVEKQGKEKKVVTFKYKPKKHSHSKYGHRQPYTKVTVEKIEA >gi|227861495|gb|ACKR01000193.1| GENE 39 34465 - 35301 678 278 aa, chain - ## HITS:1 COG:CAC0848 KEGG:ns NR:ns ## COG: CAC0848 COG1284 # Protein_GI_number: 15894135 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 3 273 11 282 292 134 32.0 2e-31 MKNIKQRSWMRWLVFLAGLEIIAISINLFYGPINIAAGGSTGISILVDAVWGINRSITVF VVNGLMLILAAIFLGKKTTQNIALGSLLLPVLMEVTPSFKAVNNDLLAVIYGGALMGLGV SLLYRVNASSGGTTIPPMILKKYFYLNPATTLLCIDMVIIFLNIFVDGWNAFFLAAFSQV VTAITMRYAETGFDKKYQVRIMSNSDLDRIQDMLKEDYQGLTIYDVIGGYSDESKRQLLI VVDPREYGPLISKVHEIDQDAFIITENVAKVHGGQWRM >gi|227861495|gb|ACKR01000193.1| GENE 40 35385 - 36761 1685 458 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01349 NR:ns ## KEGG: LCRIS_01349 # Name: not_defined # Def: V-type sodium ATP synthase subunit # Organism: L.crispatus # Pathway: not_defined # 1 458 1 458 458 830 98.0 0 MYDYRNNIKIILNKTEADDKSLENSLSAIKAILNMAEDNTAEKSETKSVTQPKNKIANTQ SIAQRNADLKQFKQLLIGLTALIETPGDEKAKKSSLDALHKLTFVPGVGKRYSNVLGKLD QAIQKSKTTKEAVNKKIFEEAMKPKEQPKRDYRKGRRYTVIRALSGCNLINDSGQIVYRI KESQIHSLNLKSGDIVEAIENRDNPNYEAEVLRVVGYRKLRMRDYDPIEEFRYAVVRGKA NQLAITRNIKGEKLRIRGKDITIPVDSSYYQGENIHVEDGSIVDLAWYTGDVRIKKNPAE AVQIRWIYQVDPPKKSDLSYQKKNKSKKEETEELTKLDMNLHYQRVGIAIGDNQNEGILE GIVSRYNGIPIPIDAFEGKKKVMERQIKDLDIVILMTAYAAHDATWNIQEFASKYGVKFA VSSSKGYRSFERALYRAENGLPAYEGTQSIDYKEVKNK >gi|227861495|gb|ACKR01000193.1| GENE 41 36852 - 38570 1167 572 aa, chain - ## HITS:1 COG:BH0682 KEGG:ns NR:ns ## COG: BH0682 COG3666 # Protein_GI_number: 15613245 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 1 518 1 517 522 365 42.0 1e-100 MYQNYTIGQTALTLNLDFAIPHNHLANTISWFVDSIPEDVLLGNTAKTGRPAYHPAMMLK ILLFAYSRRVFSGRKIELMLEENVPMMALAEHQQISYHTINNFRSSKHANELVKKSFLYF TNLLEAEGLINEGAIFIDGTKIEADANRYTFVWRKAVEKFHDKLKGQAVELYDELIAKEV VKAMAKEKVQTSQGLAELAQETEAEIEKLTEEIEQEPKAIPGGSPRKARRRGLKKLLHKL RKDYVPRMKKYEEAKEIFAGRNSYSKTDHDATFMHMKEDHMKNGQLKPGYNIQAATTDQY VVDFALYPNPTDFRTFEPFLKQMTTLDKFDKIVADAGYGSEYNYSMLEEEYSDKKYYIPY TMYEKEKTRKYRNDPTKLANWFYDEKDDYYLDQNGVRFNFKYYSQRKDRSTGQVRDFKVY EADEFQLTPELERLAKTKSGRQRQVRYNPNWQYLKEKAKAVLQSPEGRHIYSMRKYDVEP IFGHLKNVFGMRRTHLRGKKKVETDIGIAFMMMNLSKYWNRRWSKDQFSLFKNKNRQKKT VKQLKLRVGLIVFQYLRVSFFPDTFCVKKFNH >gi|227861495|gb|ACKR01000193.1| GENE 42 38729 - 38911 123 60 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01350 NR:ns ## KEGG: LCRIS_01350 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 60 73 132 132 115 100.0 4e-25 MGTILRRPKGLYTIKGKKYYYFGKGLFFPKSGTEPYRIPKKHISTAGENFANWFNWLRTR >gi|227861495|gb|ACKR01000193.1| GENE 43 38935 - 39249 311 104 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01350 NR:ns ## KEGG: LCRIS_01350 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 48 90 7 49 132 86 95.0 2e-16 MNLKKKIAISATALTVALSTAFPIAAAQSQPVKAVGIVLVHRVTAGEIAGGFALAGAAKL LNFMQRADEMDAAQYNRRANKINKMHLLRTNQVPFLSITNVAKF >gi|227861495|gb|ACKR01000193.1| GENE 44 39423 - 39602 374 59 aa, chain - ## HITS:1 COG:SP1017 KEGG:ns NR:ns ## COG: SP1017 COG1942 # Protein_GI_number: 15900888 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Streptococcus pneumoniae TIGR4 # 1 58 1 58 60 63 55.0 9e-11 MPFVHIELIKGRSDEQITNLMKDVTEAVHKNTGAPKEHIHVIINELGKHTYGQGGEWRA >gi|227861495|gb|ACKR01000193.1| GENE 45 39650 - 41443 1727 597 aa, chain - ## HITS:1 COG:FN1127 KEGG:ns NR:ns ## COG: FN1127 COG4907 # Protein_GI_number: 19704462 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 40 528 32 525 606 91 22.0 4e-18 MKKKYLGLLALLSLLSVFAIWGQSVRADVDYDIDNVRAIARVNKDGSLTMHRTIKYSFDS DARGVYYKQNLAVKQKLSNIQVKVDGQNIKAATTGKNNTYKLQKQGNSYNFKVYHRIKEN DKVKVEYSYLIHRAITNYLDTAELNFKIVGNGWDTDLDHVRAEVIFPGAVKGLKAWAHGP LSGYTQVLPKEGKIIMTADDVAGDSGVEVHAIFPTTVTSANQNIVKENKKRAFEKQEAAL AKEANQKRQRKQMLSIGLMIISVLVGFVVVIRGFFIKKVGVKPKIERDLVHNYEIPDISP TTAQILDEADKPNVKAFAAYLMQLAGKNKIKIEKYQTKHLKRTNYRITLVDDSVLTDDLL DFIFNKVGDGKSFTTKDLRDYTSKKLGRRFDKWCDGQYKQVEDKDLLDKKYKKQRSNFRT GMLMGMIASFAIWVISLMMANNIPSFVIIIGIMMIVLEVVAFIVGNSRLSIYTQKGALKT DQVRGFKKMLDDIGQFKMKDVGDLILWEDIMPYAVAFGLSKKVLKQLKIEFADELDAAPV LFYSGFYSSSSDSFEHSFERSFSSAVSTGSSSVSGSSGGFSGGSSGGFGGGSGGGAF >gi|227861495|gb|ACKR01000193.1| GENE 46 41447 - 42322 785 291 aa, chain - ## HITS:1 COG:CAC3665 KEGG:ns NR:ns ## COG: CAC3665 COG1073 # Protein_GI_number: 15896898 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Clostridium acetobutylicum # 48 286 13 258 265 90 27.0 3e-18 MLLTLTGCTIKSTTPKKAKSSVKTVKVDKQQSKEKQAKYQVIDQVWRIQQDGVDIYGHIY LPQGLAGKKKAVILAHGLAGNYRDLNSYAKYLASRGYVAYTFDFPGGAKNGQSSGVDQLK MSIFTEEKNLQLVLNTIKNRTDVDRKQVSLLGESQGGAVAAMLASKYPQEVKSLILLYPA FSITDYAKAAFKSEKQVPDKLNLFGFTIGKAYFENLFKYNLLKEATKYHGPVLIMHGTSD MIIPDSYSIKANKKFKHSKLYLFKGAGHDFKGKYHSRANTLIDKFLQKNGK >gi|227861495|gb|ACKR01000193.1| GENE 47 42482 - 43720 1402 412 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 49 245 157 343 444 115 37.0 2e-25 MTTTKKIIVRLACATVLGTAGAALTQVNRPQTAVVNAATTSVAARALGVDVASYQNADLS SHAQAGAQFAIVKVSEGTSYRNPKASSQISTALSNNMMPMAYHFATFSSNASAAAAEANY AIQTAQAFGLPKGSYIACDYETGSGNNIYGGKTPTANAIIAFMDTIKNAGYKPLLYASSS VLQNNIDTNSVIVKYPNSLWVASYAISGRIDSPNFNYFPSMNGVSIWQFTDNWKGLSVDG NIAVLPLSIDGNVTSNNGAISQAPATSNTNSASSTNKTTASSSQTTSSDSNKGVATAGYV MKKSYIYNKKGDRQGGYYAAYTNITHYGVVTLDNGKTALNMGNGRYIMASNVLGNSRVLK HNAYVYNNKGNRANWRVLRKGTPIKTYGSRMRVNGKSCYRIGRNMYVKAANF Prediction of potential genes in microbial genomes Time: Wed May 25 06:50:06 2011 Seq name: gi|227861485|gb|ACKR01000194.1| Lactobacillus crispatus JV-V01 contig00210, whole genome shotgun sequence Length of sequence - 7685 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 6, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 233 - 268 3.4 1 1 Tu 1 . - CDS 281 - 541 285 ## LCRIS_01361 putative protein without homology - Prom 569 - 628 8.5 - Term 618 - 658 3.9 2 2 Op 1 1/0.000 - CDS 664 - 1131 443 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold 3 2 Op 2 . - CDS 1128 - 1523 256 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold - Prom 1666 - 1725 9.1 + Prom 1386 - 1445 5.0 4 3 Tu 1 . + CDS 1669 - 4050 2503 ## lhv_1436 x-prolyl-dipeptidyl aminopeptidase + Term 4070 - 4116 12.2 - Term 4058 - 4102 8.0 5 4 Op 1 . - CDS 4107 - 4544 477 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase 6 4 Op 2 . - CDS 4560 - 4841 367 ## LCRIS_01366 hypothetical protein - Prom 4876 - 4935 8.3 - Term 4907 - 4941 2.1 7 5 Tu 1 . - CDS 4968 - 5831 1091 ## COG4975 Putative glucose uptake permease - Prom 5867 - 5926 7.5 - Term 5851 - 5903 -0.8 8 6 Tu 1 . - CDS 5976 - 7502 991 ## COG1620 L-lactate permease - Prom 7534 - 7593 6.1 Predicted protein(s) >gi|227861485|gb|ACKR01000194.1| GENE 1 281 - 541 285 86 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01361 NR:ns ## KEGG: LCRIS_01361 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 86 1 86 86 133 100.0 2e-30 MKLLKTKILTILCGLLTLNGLAMLFSGLIIQMDEVADFDSAQSLAVANSTNAIILAGIIM ILLFGALFFDGWAKLKNRHAKHVKLV >gi|227861485|gb|ACKR01000194.1| GENE 2 664 - 1131 443 155 aa, chain - ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 5 155 142 289 289 110 41.0 1e-24 MSMFGHSLGNISIIYYMLQNGRNRKMPQLVKQVDMAEHFAGLNFSRVPASIRQPKGLKLN SAGKPNKMNASYRKMTGVRETYPKNKVRVLNIIGDIGGQTDGTVPNVSSLSLKYLVADRA KSYQVVKFTGKNARHSKLHENPKVDKVLIKFLWNK >gi|227861485|gb|ACKR01000194.1| GENE 3 1128 - 1523 256 131 aa, chain - ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 1 131 1 137 289 75 35.0 2e-14 MRKKFSLVLLLTTIFTISLTACTNQNKVDHTKSQTKITSTPTLFFHGGGSSYHAEEHMVA AAEKAGVTNSVIRAEVAPNGKVSLSGSWKKGAKNPIVEVNYENNRELNFSRHGVYATNVV KALQKRYGIKK >gi|227861485|gb|ACKR01000194.1| GENE 4 1669 - 4050 2503 793 aa, chain + ## HITS:1 COG:no KEGG:lhv_1436 NR:ns ## KEGG: lhv_1436 # Name: not_defined # Def: x-prolyl-dipeptidyl aminopeptidase # Organism: L.helveticus # Pathway: not_defined # 1 793 1 793 793 1506 91.0 0 MKYNQYAYVETDFDQQVKELIDINFLPKNYADWNFNDLLGKLVKMTIAEAKTDAAKTTKL SEFAVSNEQTLADFLKGKPESIGTAQFYNVALQLLGYHVHYDYELADPTGFMQKNALPFV QDISDVKKLISAFYRLLNTRAKNGQILLDVMAGKGYFTQFWGQNKFKFFNGKAIPVFDTN KVIREVVYVETDLDTDHDGKSDLIQVTVFRPAETNKGLKVPALYTASPYFGGIIANEKRN HNVDENLSDAADWNDPQYVHSPIVKAKQPDDSNHPATEEAVHKSSYPLNEYMLARGFASV FAGAIGTRGSDGIRITGAPEETESAAAVIEWLHGDRIAYTDRTRSVQTKADWCNGNIGMT GRSYLGTLQIAIATTGVKGLKTVVSEAAISSWYDYYREHGLVIAPEACQGEDLDLLAETC QSNLWDAGSYLKIKPEYDKMQKELLTKEDRETGQYSNFWEARNYRHHADGIKCSWISVHG LNDWNVKPKNVYKIWQLVKKMPMKHYLFLHQGPHYNMNNFVSIDFTDLMNLWFVHELLGI ENNAYKQWPTVMIQDNLQADKWHEEKDWSNELGQKKTYYPTDDGELFQDGNGKAQQSFVD EGGIEFKKADISESDWLYKFICGDEKWAKPSLRFETDEFIHPTTIVGRPEVKVRVKGSLP KGQISVALVELGERRRLTATPKFLMRGGQELGYRFGTDTLQEFVPDKKTKAKLITKAHMN LQNYKDMKRPEKIDADKFYDLDFLLQPTYYTLPSGSKLALIIYSTDEGMTKRPLEEETYT VDLANTEIKFYEK >gi|227861485|gb|ACKR01000194.1| GENE 5 4107 - 4544 477 145 aa, chain - ## HITS:1 COG:lin1973 KEGG:ns NR:ns ## COG: lin1973 COG0229 # Protein_GI_number: 16801039 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Listeria innocua # 4 145 2 145 145 196 70.0 1e-50 MTFNKEEKEQALKRLTDEEYNVTQKAATEYPFTGKYDDFYEKGIYVDVVSGEPLFSSLDK YNAGCGWPSFTKPIKKLTYHRDQSHGMERTEVKSPEADSHLGHVFTDGPVDQGGLRYCIN SAALRFIPYDQLEQAGYGEYKKIFE >gi|227861485|gb|ACKR01000194.1| GENE 6 4560 - 4841 367 93 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01366 NR:ns ## KEGG: LCRIS_01366 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 93 1 93 93 162 97.0 3e-39 MSDNTVYVIDGRRYARNGEIVEHNVHVYSSYQNLIAAFKPFLEVSNKEVHMNGKNEMLQV RIYDPSNQFLTKYKFDIYEKKIDNFFPSTTEHI >gi|227861485|gb|ACKR01000194.1| GENE 7 4968 - 5831 1091 287 aa, chain - ## HITS:1 COG:lin0212 KEGG:ns NR:ns ## COG: lin0212 COG4975 # Protein_GI_number: 16799289 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Listeria innocua # 1 265 1 261 285 149 35.0 6e-36 MSYLFLFIPAIGWGLMPMFVAGVKKSNIYHQILGTVLGAFIFGAAVTLIKRPSFNATTFI LAMLAGAAWVIGQVGQYYSYSKVGVSETMPISTGLQLIGVPLVGVLIFGEWASTQAKLFG FLGILALVIGVAFTSLTDKGTSEGGKKNQTTTMIVLVLTTLGYITSSSIPKALKGDSIMI FFAETIGMLVAAIVYLIATKQTQVFKEKESYQVIPAGVIYAIAALAYIVSVKMNGVNLAF VMSQLCVVISTLGGILFLHEKKTQKGLVYTVIGLILIVAGAVLTSVF >gi|227861485|gb|ACKR01000194.1| GENE 8 5976 - 7502 991 508 aa, chain - ## HITS:1 COG:BB0604 KEGG:ns NR:ns ## COG: BB0604 COG1620 # Protein_GI_number: 15594949 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Borrelia burgdorferi # 5 499 6 498 500 331 43.0 2e-90 MWISFLLALIPIIWLIYSLAIRKTPAIKACSIGLLITIVLAILGFNLSIVDTLTGALEGI LMGLWPIVYVIVAALFTYNVSNYSGGIKIIQDTLSSITTDQRILVLIIAWGFGGFLEAIA GFGTAVAIPAGILIGFGLNPINAAIICLIANTTPTAFGAIGLPVITLSDVTNLPVTPLSF VITLQLALLIIIIPFLLVILTDGGVKAIKGVGLITLMSGLSFSIPQILVAKFVGPELPAI VGSICCILTTVLMAKLYHHQDNDIKENIEKHSAIEILRASLPFILVFVFVVLASSLFPDI QHLLGKVTSYIKVYTGKDAELFKINWLSSPGTLILLATFIGGLIQKVSFKKLGQILKSTI FGLWKTLITICSIVALAKVMGYAGMTSAIAAALVVLMGPIYPLVAPLIGALGTFITGSDT SANVLFGNLQLSSAKALGVNSNWVVGSNMVGATAGKMISPQSIAVASAAIGQDGSESIIL KQVAKWCLLYLGIICIFLYGIGFAVGFL Prediction of potential genes in microbial genomes Time: Wed May 25 06:50:24 2011 Seq name: gi|227861465|gb|ACKR01000195.1| Lactobacillus crispatus JV-V01 contig00211, whole genome shotgun sequence Length of sequence - 17563 bp Number of predicted genes - 19, with homology - 19 Number of transcription units - 11, operones - 5 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 2 - 43 1.1 1 1 Op 1 24/0.000 - CDS 67 - 3255 3717 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 2 1 Op 2 7/0.000 - CDS 3248 - 4333 963 ## COG0505 Carbamoylphosphate synthase small subunit 3 1 Op 3 15/0.000 - CDS 4333 - 5610 1296 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 4 1 Op 4 8/0.000 - CDS 5610 - 6566 1011 ## COG0540 Aspartate carbamoyltransferase, catalytic chain - Prom 6614 - 6673 2.8 - Term 6578 - 6617 6.2 5 1 Op 5 . - CDS 6707 - 7249 725 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase - Prom 7354 - 7413 3.8 - Term 7268 - 7307 7.5 6 2 Tu 1 . - CDS 7418 - 8341 1116 ## COG0167 Dihydroorotate dehydrogenase - Prom 8388 - 8447 6.8 + Prom 8362 - 8421 8.1 7 3 Op 1 9/0.000 + CDS 8592 - 9296 683 ## COG0284 Orotidine-5'-phosphate decarboxylase 8 3 Op 2 . + CDS 9298 - 9936 782 ## COG0461 Orotate phosphoribosyltransferase + Term 9938 - 10000 15.2 - Term 9936 - 9980 8.0 9 4 Tu 1 . - CDS 9991 - 10638 830 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases - Prom 10754 - 10813 13.2 + Prom 10713 - 10772 8.1 10 5 Tu 1 . + CDS 10810 - 11001 185 ## gi|227878929|ref|ZP_03996832.1| hypothetical protein HMPREF0506_1833 + Prom 11071 - 11130 2.8 11 6 Tu 1 . + CDS 11261 - 11428 97 ## gi|227878930|ref|ZP_03996833.1| hypothetical protein HMPREF0506_1834 + Prom 11442 - 11501 5.6 12 7 Op 1 2/0.000 + CDS 11564 - 12004 342 ## COG0038 Chloride channel protein EriC 13 7 Op 2 . + CDS 12011 - 12865 470 ## COG0038 Chloride channel protein EriC + Term 12893 - 12928 4.3 - Term 12841 - 12888 1.7 14 8 Tu 1 . - CDS 13076 - 14290 993 ## SZO_02320 transposase - Prom 14310 - 14369 3.9 15 9 Op 1 2/0.000 - CDS 14456 - 14785 167 ## COG3328 Transposase and inactivated derivatives 16 9 Op 2 . - CDS 14782 - 15633 693 ## COG3328 Transposase and inactivated derivatives - Prom 15666 - 15725 8.1 17 10 Tu 1 . - CDS 15761 - 16324 348 ## COG0582 Integrase - Prom 16489 - 16548 5.0 - Term 16512 - 16560 8.5 18 11 Op 1 . - CDS 16670 - 17047 292 ## LCABL_00900 cell growth regulatory protein 19 11 Op 2 . - CDS 17047 - 17292 267 ## gi|227878938|ref|ZP_03996841.1| conserved hypothetical protein - Prom 17319 - 17378 8.0 Predicted protein(s) >gi|227861465|gb|ACKR01000195.1| GENE 1 67 - 3255 3717 1062 aa, chain - ## HITS:1 COG:SP1275 KEGG:ns NR:ns ## COG: SP1275 COG0458 # Protein_GI_number: 15901135 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Streptococcus pneumoniae TIGR4 # 1 1061 1 1058 1058 1432 67.0 0 MPKRTDIHKIMVIGSGPIIIGQAAEFDYSGTQACLALREEGYEVVLVNSNPATIMTDTTI ADKVYIEPLTVESISRIIRQEYPDAILPTLGGQVGLNMAMELAKTGILDELHIELLGTKL QSIEQAEDREKFKELCKSLGEPVPPSKTVNTVEDALALGDEIGYPIIVRPAFTMGGTGGG ICNNHEELAEIAKNGLELSPVTECLIEKSIAGYKEVEFEVMRDHDDNAMIVCCMENFDPV GIHTGDSIVFSPSQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFNYDVIEVN PRVSRSSALASKATGYPIAKMAAKIAVGMTLDEIKNPVTGTTYAEFEPALDYVVCKIPRW PFDKFPKADRVLGTQMKATGEVMAIGRTAEEAMQKAVRSLEIDEKDLYSPEAHVASDDQL EQKLVKAQDDRLFYLAEAFRRGYSAEDVHELTKINFYFLDIVQHMVELEKTLEENKDDVD VLRLAKKYGFSDPTIASLWNETADEVRAFREKHGIIPVYKMVDTCAAEFESKTPYFYSTY DAENESHKTGKKSVIVIGSGPIRIGQGVEFDYATVHCVKALQKMGYEAIVINSNPETVST DFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGGQTSINLAHGLEEHGVKILGTKVAD VNRAEDRELFDQIIKQLHLNQPQGLTATTHEGVLEAADKLGYPVLVRPSYVLGGKAMEIV YTKAELEEYLQDHVDIAADHPILVDDYLDGRECDVDAISDGKEVLLPGIMEHIEHAGVHS GDSMAVYPPQTFSDEVKEKITDVTRKLALTLNCVGIMNIQFIVRDGEVYVIEVNPRASRT VPFLSKITGIEMAQVATRVIMGESLAEQGYGDGLAPEPDMISVKAPVFSFSKLSDVDAYL GPEMKSTGEVMGSDHTFAKALYKAFAGAKMQLPENGNVLLTIEDRDKEKILPIAKRFARI GYRIFATKGTADFLRSHDLHVDPVTKVHEDEDAKDNILNELRNGKIDLVINTMGHDIEKN SDGFIIRQVAIGQNVPLITALDTADALLTSLENRSFATDALK >gi|227861465|gb|ACKR01000195.1| GENE 2 3248 - 4333 963 361 aa, chain - ## HITS:1 COG:SPy0833 KEGG:ns NR:ns ## COG: SPy0833 COG0505 # Protein_GI_number: 15674869 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Streptococcus pyogenes M1 GAS # 2 352 4 353 360 452 59.0 1e-127 MRYLILEDGSIYAGEGFGADCETVGEVVFTTGMTGYQEAITDQSYADQILVFTNPLIGNY GITLADYESLEPRIKGVICHQVARHPDNWRMQTTLPKFLEHLNIPGIQGIDTRELVKKLR VHGTLRGKIADSKENAEKIAAELKIKNVTQGVISRVSTKSPYPVPGSKRNIVVIDFGIKH SILRELAERDCNCIVLPYTATAQEVLNLHPDGVLLSNGPGDPEEMVEATKMVREVEKHVP LMGICMGHQVFALANGAKTYKMKFGHRGFNHPVREIATGNIGFTSQNHGYAVSADSIDKD NLMITHVEVNDGTVEGLRHKKYPAFSVQFHPDATPGPHDEVSLFDDFMSMIDQRKEEERH A >gi|227861465|gb|ACKR01000195.1| GENE 3 4333 - 5610 1296 425 aa, chain - ## HITS:1 COG:SA1044 KEGG:ns NR:ns ## COG: SA1044 COG0044 # Protein_GI_number: 15926784 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Staphylococcus aureus N315 # 4 424 3 424 424 414 52.0 1e-115 MATVIKNGTVYQNGRLIKADVLIEDQKIKAIGTNLTADKEIDASGKLVSPGLVDVHVHYR DPGQTYKEDIKTGSEAAAHGGFTMVGAMPNVTPVPNTPELMQKMVQENNEKGVVHIFQYG PITNDETTDVIPDYAALKKAGAFALSNDGHGVQTAQTMYLAMQKAKENNLIIATHAQDDS LFNKGIVNEGPKAKELNLPPVTELAETTQIARDLLLAQKTGVHYHICHVSTKTSVELVRM AKARGINVTCEVAPHHILLTDDDIPKDNGYYKMNPPLRNKEDQAALLVGLLDGTIDLIAT DHAPHARNEKEGGMKGAAFGITGSETAFSTLYTKFVKEEKVFTLEQLLSWLSDKPAKTFG LKNAGVLEPGKPADIAIFDLDHETELKEEDYKSKGVNTPFTGDKVYGETVMTMVDGQVVY RRDEQ >gi|227861465|gb|ACKR01000195.1| GENE 4 5610 - 6566 1011 318 aa, chain - ## HITS:1 COG:SPy0832 KEGG:ns NR:ns ## COG: SPy0832 COG0540 # Protein_GI_number: 15674868 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Streptococcus pyogenes M1 GAS # 5 312 6 307 311 338 53.0 6e-93 MENLNLVNLPHFVSVENLDSNEVEALIRRAEYFKKGGATPRLTKPVYVTNMFFEDSSRTH TSFEMAERKLGLTVIPFDPAHSSVNKGETLYDTSLIMNALGVNLEVIRHSQNEYYNDLIN LKEHQHLNIGVINAGDGSGQHPSQCMLDMMTIHEHFGHFKGLKVAIVGDITNSRVAKSDM ELLTRLGAEVYFSGPSYWYDKEFDQYGKYEEIDQLVSNMDVMMLLRVQHERHAGDPNEKT FNAKAYHEKYGINQQRYSALKPDTIIMHPGPINHDVELSGDLVESDKCMFVRQMQNGVFM RMAMIEAVLRGRRLGGLE >gi|227861465|gb|ACKR01000195.1| GENE 5 6707 - 7249 725 180 aa, chain - ## HITS:1 COG:BH2541 KEGG:ns NR:ns ## COG: BH2541 COG2065 # Protein_GI_number: 15615104 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Bacillus halodurans # 1 176 1 176 180 192 56.0 3e-49 MAKEIWDALAMKRALTRITYEIIEQNKGTDDLVLVGIKTRGVYLAKRIHDRIQKLEGVDV PVGELDITLYRDDRHDASLKQDPVVNSDQVGVNIDDKHVVLIDDVIYTGRTIRAAMDALM HVGRPSSIRVAVLVDRGHRELPIRADFVGKNIPTSADEQVAVNVIEKDGKDSVELKALPK >gi|227861465|gb|ACKR01000195.1| GENE 6 7418 - 8341 1116 307 aa, chain - ## HITS:1 COG:BH2534 KEGG:ns NR:ns ## COG: BH2534 COG0167 # Protein_GI_number: 15615097 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Bacillus halodurans # 1 302 1 299 305 312 55.0 5e-85 MVNTHVKLPGLDLKNPVMPASGTFGFGDVPAAKKFDLNDLGAMVIKTTTPHATTGNPQPQ IAVLDDGVLNSVGLTNPGVNKVISEKLEPLRKQYPELPIVASVGGDSEADYVEVAQKLSN SGLVNALEINVSCPNVAQGGMSFGVHADVVEELTRKIKAVVNIPIYVKLTPNVTDITVIA KAAEKGGADGLSMINTLLGMRIDVKKRRPLLGHNMGGLSGEAVKPIAIRMISQVRQITSL PIIGMGGIASAEDVVEFMLAGANAVAVGTAHFKDSIASKHIADALPQELEKLGIEDINEL VGQVKFN >gi|227861465|gb|ACKR01000195.1| GENE 7 8592 - 9296 683 234 aa, chain + ## HITS:1 COG:L181692 KEGG:ns NR:ns ## COG: L181692 COG0284 # Protein_GI_number: 15673327 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Lactococcus lactis # 2 234 5 236 237 220 49.0 2e-57 MKPVIVALDIDNEEQLHKILSKLGKPENVFIKVGMELFYHAGNQVVKDLAEQGYKIFLDL KLHDIPNTVYNGAKQLAKLGITFTTVHALGGSQMIKSAKDGLIAGTPVGKSVPKLLAVTE LTSISDEVLAHEQNCALSMKEQVLSLAKMAKHSGADGVICSPLEVKELHEKVGDDFLYVT PGIRPAGNAKDDQSRVATPAQAKEWGSSAIVVGRPITLASDPEAAYEAIKKEFN >gi|227861465|gb|ACKR01000195.1| GENE 8 9298 - 9936 782 212 aa, chain + ## HITS:1 COG:L80411 KEGG:ns NR:ns ## COG: L80411 COG0461 # Protein_GI_number: 15673050 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Lactococcus lactis # 6 206 7 207 209 213 50.0 3e-55 MHKDQIISQLIQEKIITISPDKPFTYASGMLSPIYTDLRLTVSYPELRDMIAGDLANLIA KEFPEATIIGGVATAGIPHAAWVADKLHLPMIYVRPKPKDHGKGRQIEGRFSKDDKIVLI DDLITTGGSVLNAVKATEKDGGNVIGVSSIFTYYLPDAKENFAKANVKYAPLLSYPELLK KENESGHISSTQYDVLKTWHEDPWAWGKQFEK >gi|227861465|gb|ACKR01000195.1| GENE 9 9991 - 10638 830 215 aa, chain - ## HITS:1 COG:ECs1906 KEGG:ns NR:ns ## COG: ECs1906 COG0702 # Protein_GI_number: 15831160 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1 212 9 217 220 186 46.0 2e-47 MTKIAVLGASGQIAKLAENLFLEDKNNELILFLRHPNKLDKKDIDDQRERIVVGDASKLD ELAPAIKGADIVYANLAGSNIEDQAKTVVKAMDEDGIKRLIWISSLGVYDEVPGKFGEWN KNILGSYLTTYRAAADQITASDLDYTIIRPAWLTNKDEVDYEITEGATTPFKGTEVSRLS VASYVNEIVKDQSKDSRGNVGLNKPNTDGDKPAWY >gi|227861465|gb|ACKR01000195.1| GENE 10 10810 - 11001 185 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878929|ref|ZP_03996832.1| ## NR: gi|227878929|ref|ZP_03996832.1| hypothetical protein HMPREF0506_1833 [Lactobacillus crispatus JV-V01] # 1 63 1 63 63 101 100.0 2e-20 MNNQEKAYLFIKDQINTGHFKPGHLLSENQTRIKLNMSRTPIREAIKQLENEGLLVRQGQ KNR >gi|227861465|gb|ACKR01000195.1| GENE 11 11261 - 11428 97 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227878930|ref|ZP_03996833.1| ## NR: gi|227878930|ref|ZP_03996833.1| hypothetical protein HMPREF0506_1834 [Lactobacillus crispatus JV-V01] # 1 55 66 120 120 101 100.0 2e-20 MRYAIVDNDRCMKSSVQEIMDIISAVEKKDILLASNALKKHIKNVYDWEQQFLQK >gi|227861465|gb|ACKR01000195.1| GENE 12 11564 - 12004 342 146 aa, chain + ## HITS:1 COG:SPy1114 KEGG:ns NR:ns ## COG: SPy1114 COG0038 # Protein_GI_number: 15675095 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Streptococcus pyogenes M1 GAS # 7 145 21 157 510 90 38.0 6e-19 MTKTLVQAISVGLTTGVIVSAFRWIIDQTMKLLYQIYPQMAAQRVLIVPYILLMFIIAIT LGKITAPYLEQVIGSGVPQIEAVLLNENKMPWWSILWRKFIGGLLAICPGLMLGREGPCI EMGAMVGQGLAEKVFKSNKENLRTLQ >gi|227861465|gb|ACKR01000195.1| GENE 13 12011 - 12865 470 284 aa, chain + ## HITS:1 COG:SP1157 KEGG:ns NR:ns ## COG: SP1157 COG0038 # Protein_GI_number: 15901022 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Streptococcus pneumoniae TIGR4 # 17 275 184 437 516 154 37.0 1e-37 MAAGLAAAFSAPIAGALFLVEEITFDFKPQKVVAVLAATFSADFVTILAFGNKPFLYLPV NDYLPVTAYWALPLIGIFLGIMAYIYQYVLLSLKPWFSKIKKIPAAYHSIIPLILIIPVG LFNAHLLGGSHVLIDNLFNLNWNVKAFGSWDFLLLPILFLIIRFVFSMLSYDSSVPDGIF MPILVLGALLGIICANIMIKLQIILPMYFPHILVISMAAYFGAIEKAPFTAIMLLTEMIG TVQQVLPMIIVTFVAYYILDILGGKPIYEDLRLQMNYHKNMSII >gi|227861465|gb|ACKR01000195.1| GENE 14 13076 - 14290 993 404 aa, chain - ## HITS:1 COG:no KEGG:SZO_02320 NR:ns ## KEGG: SZO_02320 # Name: not_defined # Def: transposase # Organism: S.equi_zooepidemicus # Pathway: not_defined # 1 401 8 406 472 303 44.0 9e-81 MKYDEQYKVIKDLVDHNGNKKRAALKLGISVRQINRRIKQYQAKGKAAFVHGNKDRKPVN CLTTEINNQIVTLYRTKYQDCNIKHFVQLLDRFEDIHVSYTKAYSLLKQQDILSPKPWRK TKRALAKKKWHKQHPKQSKQEVSAAVDHQLALADAHPRHERCKYFGEEIQMDASVLVWFG KRKAYLHLAIDNATGIIVGAYFDWEETLNGYYHVFEQILKEYGIPLCFKTDNRTVFNYET AQTKAAHKDVLTQFGYACKTLGVDLKTTSVSQAKGMVERANQTVQGRLKPELRLAGIMTI NEANKYLHDVFVPDFNQNFSQTSRKAWSVFEKAPDDRKINYTLAVLTGRVFDSGSAISFK NKLYQATDEYGKLVCFMKGTKCLVIEALDGQLLTTVDEHVYLLK >gi|227861465|gb|ACKR01000195.1| GENE 15 14456 - 14785 167 109 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 109 284 391 391 97 47.0 7e-21 MTVQVLHEFYQNWEKAYKNVVRDLRQVEPDLLTFYNYSPAIRASIYSTNMIESFNNRLKR KTKPKTEFPTEQSLDTFIGVQAMDYNDRYFNRIHKGFGQVRDTLESYFD >gi|227861465|gb|ACKR01000195.1| GENE 16 14782 - 15633 693 283 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 266 1 266 391 279 47.0 4e-75 MNDFTKDMANALFNQDKINDLFRQKLQQAVNDLLESELTAFLGYNPYERDGWNTGNSRNG AYYRKVDTQFGQIEIKVPRDRNGEFHQHTMPDYKRHTDVLEQTVIKLYSKGVTTREIADL IEKMYGGYYSPAMVSNISKEMIPKVEAYHQRHLSDKFFCVYLDATYIPLKRVTYEREAVY IAIGIKPNGHKEVIDYCIAPTENIEIWSEMLKGFKSRGLEQVELFLSDGVVGMKEAICQS YPKAHFQRCLVHVMRNISAKMRVDDRKKHWMNSSRFILSQTKK >gi|227861465|gb|ACKR01000195.1| GENE 17 15761 - 16324 348 187 aa, chain - ## HITS:1 COG:pli0062 KEGG:ns NR:ns ## COG: pli0062 COG0582 # Protein_GI_number: 18450344 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 50 186 1 127 147 127 50.0 9e-30 MKHKDTRPITDPIILKKFLKHLREDTSMGERNYAIFQTGKATLLRVSDVLALKKNDVFQA NGRVKKNAYIVDKKTKKPNRLYLTPVSDVLEDYYDWLQEYEKKHPYTKLFSSEWLFPSSR RLGEDVPIRENSFYRICHQTGLKIGVNWIGSHSMRKTGAFMVYQQTNHNTALVMKMLNHS SEAMTLR >gi|227861465|gb|ACKR01000195.1| GENE 18 16670 - 17047 292 125 aa, chain - ## HITS:1 COG:no KEGG:LCABL_00900 NR:ns ## KEGG: LCABL_00900 # Name: chpA # Def: cell growth regulatory protein # Organism: L.casei_BL23 # Pathway: not_defined # 4 121 6 119 121 100 46.0 2e-20 MIYPKKGDIVKADAEPHSGHEMGGHNPHKGNIRRHYVVMSTSAYNKSTHMFIGMPITTSD KYQGNPHYEPILIPGSNGTGVKGYVVLWQLQNFDFESRNGEIVNHVNIQLLDKLQGFAND MVGLE >gi|227861465|gb|ACKR01000195.1| GENE 19 17047 - 17292 267 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878938|ref|ZP_03996841.1| ## NR: gi|227878938|ref|ZP_03996841.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 81 1 81 81 125 100.0 6e-28 MTVKLRKVGNSKTLTVPKDIIITSKEYTVKNEGMNIVFTPVVKKKKNIFATKEWQNYDYQ KDIENDVELQSVKPVGREVVD Prediction of potential genes in microbial genomes Time: Wed May 25 06:50:47 2011 Seq name: gi|227861460|gb|ACKR01000196.1| Lactobacillus crispatus JV-V01 contig00212, whole genome shotgun sequence Length of sequence - 5016 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 64 - 396 265 ## COG1609 Transcriptional regulators 2 1 Op 2 . + CDS 329 - 730 399 ## LCRIS_01408 sucrose operon repressor ScrR 3 2 Tu 1 . - CDS 1064 - 4819 3927 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases - Prom 4879 - 4938 5.7 Predicted protein(s) >gi|227861460|gb|ACKR01000196.1| GENE 1 64 - 396 265 110 aa, chain + ## HITS:1 COG:SPy1535 KEGG:ns NR:ns ## COG: SPy1535 COG1609 # Protein_GI_number: 15675434 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 3 93 2 94 325 70 47.0 7e-13 MAVTIKEIAKKAGVSIATVSRYLNQNGYVGIDSALKIKEAIKKLGYKPKNVISAKTELNL IEINFSQINNPFYSELYEYLATILQDKGYDCILHFAFRSLSRARYAVLFG >gi|227861460|gb|ACKR01000196.1| GENE 2 329 - 730 399 133 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01408 NR:ns ## KEGG: LCRIS_01408 # Name: not_defined # Def: sucrose operon repressor ScrR # Organism: L.crispatus # Pathway: not_defined # 6 132 92 218 318 189 74.0 3e-47 MIAFCILHLDHYQEQDMQYYLDKYKQKKIVGLLTSSPIQISKKSGKLNLPVVSFDRVISP QIPTVQSNNYDAGMQIAKSVLKQKKKKVIIIAGSKEDYYPISDRIKGMMCVCNTFDVKFD LRSISARESIIAS >gi|227861460|gb|ACKR01000196.1| GENE 3 1064 - 4819 3927 1251 aa, chain - ## HITS:1 COG:BS_amyX KEGG:ns NR:ns ## COG: BS_amyX COG1523 # Protein_GI_number: 16080045 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Bacillus subtilis # 389 943 84 621 718 432 40.0 1e-120 MNKKSGHNIKFKSIFVCTSAIMSLWLGANLTTTQVHAAEDNAAPKSSEVVGQTNSSKDNA ATATVQNQSNAKAKQRQQGVAPQNVPTVLAAKTKDEGTNNSPAREEVKDQTKVVIHYNGD GEKWVPYIWGKKPNGNGNEYKWAGKDDNGYYSVIDLDKNYDQVGVLIKTKGSWAGKDGTG ADRSLNVSDNGKAEVFYKAGSDDAQKVTPEYHSANINLHYYGDDQVNKVNVWTDKDQDNK QLISLTKQGNSQDGSIKLDNTDFNKLFVAPVGSDEITREFTPLPGNKATDIYLVKNDTEA YYSKSFALADQSLSSAYMTSPDSLTVEAGKATTVDKIKGKLSLRNNSIDHIEAVDANTDG KAKKFIIHTKADIDILKDNQVGLGMNFKNVDIGPYVRSKAFDDKYAYDGDDLGCTYDSKK TQIKLWAPTAKEVELNLYDSVDNSAKPTNVIALTRGDRGVWTGIIKGDKKGWAYDFKLTF GNGKITQTDDPYSKAVTVNGVRSVIEDYNNIKPTDFNRMPSFSKPTDAIVYETSIRDFSS DPNSGIKDKGKFLGMIESGKTPTGQVTGLDYLKALGITHVQIMPSYDFASIDETKSLKNQ YNWGYDPKNYDVPEGSYSSDPTNPTARIIEMKEMINGLHKAGIRVIMDVVYNHVYNPQEQ AFELTVPGYYFRYDADNNTTSDSGCGNDIGSQRKMVRKYIVDSVVYWAKNYNLDGFRFDI MSLLDRETMNDVRAALDKIDPGIITYGEGWEVGNQKYTREEGTTQYTADKVPNVGFFSDD MRNSVKGNDDGSEPGLVIGNGNERNFDKHAVLFTDSFLRGKWLHNDSWEPHNYATPSQMV NYAACHDGKTLYDYIKAAMPNESDENSARRVRLANSMIMLSQGISFFHSGQEALRTKGGN SNSYNSPVNINEINWERVGANKASVQYFQKLAKLRKQLPILHLNDFNKIYDENVTKIISY GRETKDKNIKGVFEYEYNVNGKKLLIVFNVNNDKVALNNVDLSHGKKLLDSDGNVKLSDK TMLAPLSTLVVDEDGTMVLPDVPKPDQPVSPTTPGDKPGKPTTPENPRIPDQKPANPIVP QETIITPEAPSENSIIDNTKNIINGSEETTTVSTQDNTTTEILLTHNAYVYDSEANPIYQ NDNKLVLKAGDTIKPLDNGKKYSIKGKLFYKVAKNQFVKVANTVSYYKLAHNSFVYNKHG KAVKKNGKRILLKKNKHISLHSDKVVKIKGKKFYQLKDGSFIKARNVKRIG Prediction of potential genes in microbial genomes Time: Wed May 25 06:51:00 2011 Seq name: gi|227861427|gb|ACKR01000197.1| Lactobacillus crispatus JV-V01 contig00213, whole genome shotgun sequence Length of sequence - 29897 bp Number of predicted genes - 31, with homology - 31 Number of transcription units - 13, operones - 6 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 15 - 74 11.2 1 1 Tu 1 . + CDS 319 - 1821 1076 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 1831 - 1878 8.2 - Term 1821 - 1864 6.5 2 2 Tu 1 . - CDS 1874 - 2167 307 ## LCRIS_01379 hypothetical protein - Prom 2262 - 2321 5.4 + Prom 2209 - 2268 6.5 3 3 Op 1 9/0.000 + CDS 2296 - 2958 586 ## COG1760 L-serine deaminase 4 3 Op 2 . + CDS 2973 - 3854 1016 ## COG1760 L-serine deaminase 5 3 Op 3 . + CDS 3863 - 4177 381 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme + Term 4211 - 4267 5.2 + Prom 4228 - 4287 10.2 6 4 Op 1 2/0.250 + CDS 4321 - 5370 856 ## COG3666 Transposase and inactivated derivatives 7 4 Op 2 . + CDS 5315 - 6028 638 ## COG3666 Transposase and inactivated derivatives + Term 6155 - 6194 1.0 - Term 5872 - 5939 12.1 8 5 Op 1 . - CDS 5985 - 7058 1097 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 7111 - 7170 8.9 - Term 7139 - 7182 6.0 9 5 Op 2 . - CDS 7209 - 8489 1649 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases - Prom 8564 - 8623 13.3 + Prom 8517 - 8576 8.1 10 6 Tu 1 . + CDS 8775 - 9995 1415 ## COG0282 Acetate kinase + Term 9996 - 10030 4.5 - Term 9981 - 10021 9.2 11 7 Tu 1 . - CDS 10031 - 11527 1410 ## COG0531 Amino acid transporters - Prom 11562 - 11621 6.4 12 8 Op 1 . - CDS 11646 - 11963 390 ## LCRIS_01393 OrfB 13 8 Op 2 . - CDS 11999 - 12175 123 ## gi|256843517|ref|ZP_05549005.1| conserved hypothetical protein 14 8 Op 3 . - CDS 12189 - 13688 1313 ## LCRIS_01394 hypothetical protein - Prom 13720 - 13779 6.7 - Term 13774 - 13815 8.1 15 9 Op 1 . - CDS 13837 - 14589 903 ## LCRIS_01395 hypothetical protein 16 9 Op 2 . - CDS 14641 - 15153 443 ## LCRIS_01396 hypothetical protein 17 9 Op 3 . - CDS 15157 - 15561 383 ## LCRIS_01397 redox protein, regulator of disulfide bond formation 18 9 Op 4 10/0.000 - CDS 15571 - 16665 1100 ## COG0477 Permeases of the major facilitator superfamily - Prom 16721 - 16780 4.7 - Term 16676 - 16713 1.4 19 9 Op 5 40/0.000 - CDS 16790 - 18067 1271 ## COG0642 Signal transduction histidine kinase 20 9 Op 6 2/0.250 - CDS 18076 - 18513 472 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 21 9 Op 7 1/0.250 - CDS 18513 - 18740 236 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 22 9 Op 8 . - CDS 18748 - 19359 594 ## COG2357 Uncharacterized protein conserved in bacteria - Prom 19380 - 19439 8.3 - Term 19440 - 19496 9.3 23 10 Op 1 . - CDS 19537 - 20979 1492 ## COG0366 Glycosidases 24 10 Op 2 . - CDS 20991 - 23192 2002 ## COG3345 Alpha-galactosidase 25 10 Op 3 21/0.000 - CDS 23202 - 24314 1273 ## COG3839 ABC-type sugar transport systems, ATPase components 26 10 Op 4 38/0.000 - CDS 24341 - 25174 925 ## COG0395 ABC-type sugar transport system, permease component 27 10 Op 5 35/0.000 - CDS 25189 - 26064 1093 ## COG1175 ABC-type sugar transport systems, permease components 28 10 Op 6 . - CDS 26077 - 27333 1239 ## COG1653 ABC-type sugar transport system, periplasmic component 29 11 Tu 1 . + CDS 27519 - 28475 925 ## COG1609 Transcriptional regulators + Term 28487 - 28538 5.1 - Term 28473 - 28528 11.4 30 12 Tu 1 . - CDS 28532 - 28765 323 ## LCRIS_01409 hypothetical protein - Prom 28788 - 28847 3.6 - Term 28832 - 28883 7.5 31 13 Tu 1 . - CDS 28890 - 29885 1075 ## COG2017 Galactose mutarotase and related enzymes Predicted protein(s) >gi|227861427|gb|ACKR01000197.1| GENE 1 319 - 1821 1076 500 aa, chain + ## HITS:1 COG:L119564 KEGG:ns NR:ns ## COG: L119564 COG0488 # Protein_GI_number: 15672881 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 499 1 510 513 400 44.0 1e-111 MSTISLKNVSFAYDGQDKIFDNLNLNLDSNWKLGLIGRNGRGKTTFMKMLLKQVEYQGTI QSDLEFNYYPQVINNPDNLTIYALQEQFNFEEWELKRELNLLHAKENIIWQPFSTLSGGE QTKILLALCFINQHSFALLDEPTNHLDEDTRNQVAQYLHNKKQGLIVISHDRNFVDKVVD HTLAIEMQKIRLEQGNYTRYEKQKELEDESNIAYNAKLERQIKNLHASQQKMQTFAQRSE SNKNAGAKMKGDIRHRSTVYDKGFMGHKAAKKMKLAKNVEARLDKNIEERKGLLKNIEAD NDLAMNFVPDHHKHLITAKGVSLAYDKLPLFQPTTFDLMRGHQIVITGKNGIGKSSLFKA ITNTFAGTITGKLHSADKISISYLSQIEQSNNLSLKDFAQKHHLNYADFLNILHKLGTER DIFTNSINQMSSGQQKKVYLAKSLLEPANLYLWDEPLNYLDVFNQEQIIQLIKKYHPTML VIEHDQRFIDELGAQVIHLT >gi|227861427|gb|ACKR01000197.1| GENE 2 1874 - 2167 307 97 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01379 NR:ns ## KEGG: LCRIS_01379 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 97 1 97 97 130 96.0 1e-29 MTKEKAELKQSLEHLAEQKGSQQAVSYQDLFTPQLMQKYTSFATIDFFVRELGVKDFTQI EQMAIDQVDEFVKKETKFASWDEMQQKAVSEYMMKLF >gi|227861427|gb|ACKR01000197.1| GENE 3 2296 - 2958 586 220 aa, chain + ## HITS:1 COG:BS_yloW KEGG:ns NR:ns ## COG: BS_yloW COG1760 # Protein_GI_number: 16078648 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Bacillus subtilis # 4 162 2 156 220 154 50.0 1e-37 MTNRYKSVFDIIGPVMVGPSSSHTAGAVAIGRAGYKLFGGTPSKVTVHYYDSFAQTHRGH GTDYAIAAGILGFDSDDLRVPKAPEIARQRGVDLRFVEEDGPSPIGHPNTAILNMSNDKK KVELAGCSIGGGAIEIRKIVLHNTEIQPAGALPIIILVDPHKNIRIEQELTALLHEKAPF SRKRIFHTKNYNIYEYDVENYLHPDLLQELKKKFENIICL >gi|227861427|gb|ACKR01000197.1| GENE 4 2973 - 3854 1016 293 aa, chain + ## HITS:1 COG:SA2318 KEGG:ns NR:ns ## COG: SA2318 COG1760 # Protein_GI_number: 15928109 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Staphylococcus aureus N315 # 1 290 1 290 299 318 63.0 1e-86 MYNHIKEIVAAAEKTHKPISELIIEQECQLSGLPREKVWQRMKYNLQTMRAAVKRGESGN GVFSKTGLTGGEAIKLKKYREKGHTLSGDTMMAAVENAIATNEVNAAMGVVCATPTAGSS GTLPGVLFLLEKRLQLSEEQMIRFLFTAGGFGMVIANNAEIAGATGGCQAEVGSASAMGA AAAVEVAGGSAEQSAQALSIAMSNLLGLVCDPIAGLVEVPCVKRNGIGAGNALIAADMAL AGCTSVIPADECIEAMKKVGHQMPASMRETGIGGLAGTPTGQAIKAKIFGKDA >gi|227861427|gb|ACKR01000197.1| GENE 5 3863 - 4177 381 104 aa, chain + ## HITS:1 COG:lin2362 KEGG:ns NR:ns ## COG: lin2362 COG2151 # Protein_GI_number: 16801425 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Listeria innocua # 5 98 3 96 102 102 48.0 2e-22 MRDSKTIKNDIIEHLAQVIDPELNVDVVNLGLIYEIDLDQDGICLINMTLTTPACPLTDY LIKQITTAVKKVPEVKNVDVEFVWYPVWTPERMSDAAKKYFKIQ >gi|227861427|gb|ACKR01000197.1| GENE 6 4321 - 5370 856 349 aa, chain + ## HITS:1 COG:BH0682 KEGG:ns NR:ns ## COG: BH0682 COG3666 # Protein_GI_number: 15613245 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 1 334 1 339 522 248 42.0 1e-65 MYKNYITGQTALTLNLDFAIPANHLANVISWFVDSIPEDVLVGKTAKTGRPAYHPAMMLK ILLFAYSRRVFSGRKIELMLEENLPMMILADQQKISYHTINNFRSSSHANELIKKSFIYF TNLLEDEGLINEGAAFIDGTKIEADANRYTFVWRKKYHEKLKGQAVELYDELITKEVVKE MEKEKVQTSQGLKELAQETEAEINKLTKEIEQENKAIPGGSPRKAKRRGLKKILHRLRKD YVPRMQKYEEAEEIFAGRNSYSKTDHDATFMHMKEDHMKNGQLKPGYNIQAVTTDQYVVD YAIFPNPTDFKTLEPVLDQMTVLDKFDKIVADAGGKISRQEVLYSLHYV >gi|227861427|gb|ACKR01000197.1| GENE 7 5315 - 6028 638 237 aa, chain + ## HITS:1 COG:BH0682 KEGG:ns NR:ns ## COG: BH0682 COG3666 # Protein_GI_number: 15613245 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 12 173 357 517 522 111 43.0 1e-24 MLEEKYPDKKYFIPYTMYEKEQTKKYKNDPTKLINWYYNEKDDYYIDHHGVRLNFKYYSQ RKDRSTGQVRDLKVYEADEFQLTPELEQLAKTASGRQRQVRYNPNWQYLKEKAKEVLQSE EGRHIYGMRKYDVEPVFGHLKNVFGMRRTHLRGKEKVETDIGIAFMMMNLNKYCQRRWLK GRFLLLKILKRTKKRSRFLKKEILIVFIHLEASFFPDTFITFQIIYSNRPQTIQYRS >gi|227861427|gb|ACKR01000197.1| GENE 8 5985 - 7058 1097 357 aa, chain - ## HITS:1 COG:lin0289 KEGG:ns NR:ns ## COG: lin0289 COG0624 # Protein_GI_number: 16799366 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 1 355 1 378 378 273 41.0 5e-73 MTDTEELKILSDLVAIKSVNDNEILVAKYLQKLLGEHGISSRLLEYFTTRADLFAEIGTG HPILAICGHMDVVSPGELDQWHTDPFKLTNKDGKLYGRGATDMKSGLAALVIAMINIHEH HLIKHGSIRLLATFGEEVGEPSGYSIAIAHKGSMDIKLTSQGKEAHSSMPEKGYNAIDPL MDLLVKANKAFRETDKNNPDLGKLTFNTTVFTGGEQVNMIPGEATAQINVRTIPEFNNSL VEKKLTELVKAENAQGAKIKMDIYMSEPSIKTDGKSEFVKLAQKIGAKYAEKPIPTVAIK PVTDASNLIADKGPSYPFAMFGPGNDTPHQVNEYVDEKMYLNFVKIYTELFVAYLNK >gi|227861427|gb|ACKR01000197.1| GENE 9 7209 - 8489 1649 426 aa, chain - ## HITS:1 COG:SP0715 KEGG:ns NR:ns ## COG: SP0715 COG1304 # Protein_GI_number: 15900612 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Streptococcus pneumoniae TIGR4 # 8 387 3 378 378 355 47.0 1e-97 MTHYYEGFPQSDRDEKIKMVNVDELEERVKKVMPEGAYYYIASGAENEWTWRNNTAAFNH FQVVPRALTDMADPQTNTDFMGMHLKTPIMIAPIACHGIAHKDAEVATQKGAAMAGALFS SSTYANKSVEEIAAAAPEAPRFFQLYLSKDWNFNQMVFDAIKKAGYQGIFLTVDALVSGY REANLRTNFTYPVPLDFFKRYLGAKGKGQSVAQMYASSAQKIGPEDVERIKKESGLPVFV KGVMCAEDAYKAIGAGADGIYVTNHGGREVDGAPATIDVLPEIAQAVNHRVPIIFDSGVR RGSHIFKALALGADIVGIGRPYLYGLALGGAHGVASVIEQLNAELKIDMQLTGCKTIDDV KHAKLTHIAYTADNLPSNTDPSRRKEYPVTDENQVKQTDAVSGASKLEGKPAPEPEADTT TGASVR >gi|227861427|gb|ACKR01000197.1| GENE 10 8775 - 9995 1415 406 aa, chain + ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 1 396 1 394 395 416 52.0 1e-116 MKKILAINSGSSSFKFKLFTFPDEKVISEGMADRVGLNGSTFTIKVKGEKHQEKVDIPDS ETAVTILLENLKKYDLIDDPKEIIGIGHRIVAGGEEFKDSTLIDEKSLQKIYDLKQYTPL HNTAEADVIKAFMKVLPGVPEVAVFDTSFHQTLDPVHYLYSLPYKYYEKYGARKYGAHGT SVRYVSQKAAEIMKRDLKDLKLIVCHLGSGASVTAVKDGKSFDTSMGFSPMAGITMSSRS GDVDPSLLAFVMKKENLDADQMLKVLNNESGLLGISGISPDMRDLRGDMTKLEGQKKKRA DLARNIFINRIIRYIGAYTLEMRGLDGIAFTAGVGEHDFGVREHVMDSLELLGLKPDSAA NKENATIITKPDSTIVGMVIPTNEELMIERDVVRVAGLKVKNREKK >gi|227861427|gb|ACKR01000197.1| GENE 11 10031 - 11527 1410 498 aa, chain - ## HITS:1 COG:ECs5137 KEGG:ns NR:ns ## COG: ECs5137 COG0531 # Protein_GI_number: 15834391 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 8 492 21 504 514 379 43.0 1e-105 MKNNDHSKISRSSLVLMIFSSIFGFSNSLTAFYQMGYSSIIWYIVTAILFFLPSALIFAE YGASFKGIKGGIFSWLEGSTNEKVAFIGTFIWLSAWVIWLVSSPQFFLVSVSTAIFGHDT TQSWHLGPLTSTQLLGVLEVIFLAIVTFCAAKGIDKIKAINNIGGIFTLGIAIGFTAVSL FVFILNRGQLAEPVTAQNMVHSPNPAFQSPIAVISFIVYALFAYGGLETTSGVIDSVDKP EKNYPKALITAMVLMTALYVVNIFMCGVAVNWNKSLGGKGVDLANVEYVLINNLGIVTGH SLGLSHSTSLAIGTVFSRLAGIADVLSGIAAAFLMVYSPIKSFIEGCDPRLLPKKMVKLN KHNMPEFSMWVQAIVVSVIILFISFGGNGAQQFYTILMDMMNVSSSAPYLFLIAAYPFFK AKKDLDRPFVFIEGKKKVWATTIVVWLVVAVGIIFTCIEPLFTGDWQTSFWTAIGPVAFG VIAWIYYAYNERKEKAMA >gi|227861427|gb|ACKR01000197.1| GENE 12 11646 - 11963 390 105 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01393 NR:ns ## KEGG: LCRIS_01393 # Name: not_defined # Def: OrfB # Organism: L.crispatus # Pathway: not_defined # 1 105 136 240 240 180 85.0 1e-44 MNNDTSTTDKAMTLMYHNMRNQLFWDGNKRTATLAANKLMIDHGAGLINAPLDKWDRWNK LISQYYLTGKMNMLKDWTYENGIQGVVLNNNSDLPKPDINPEDYD >gi|227861427|gb|ACKR01000197.1| GENE 13 11999 - 12175 123 58 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256843517|ref|ZP_05549005.1| ## NR: gi|256843517|ref|ZP_05549005.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] # 1 56 1 56 217 108 100.0 9e-23 MLYPDKFYLTQDLNRRFARTNLARLIFSDLHFEKTNISLIQTQLVADGLNIERASEII >gi|227861427|gb|ACKR01000197.1| GENE 14 12189 - 13688 1313 499 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01394 NR:ns ## KEGG: LCRIS_01394 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 499 1 499 499 957 96.0 0 MKRVKVYLGLACLMTLLCLKPQMVWARELNPFQTKMINPHTSYRIYQNLTRKGPSRSLCL ANTFKHGNVQASAVRKVRGNKYCYVWLDGHRGGWVNQRAFLRRKIAVVHQISLVKNSHYS FPTRDAINYATDAAGTIIEPSKVKVSRAEVSSSKKESYRVSYSYGKAHAQTVVQVRANAR EGIVKATKKPQAGDSARSWFKHYKTSGNWGRSFAPETKSHVLKSVHFKLKTYFYQPATLC QSDSVTGTVGLVPEGLTVSNGSMYATMYHSPNDTRAHIVSYKFNQVPNRYTMQKLPWLPW SQFLRLASHVKISPYIKLGHGQAIGSTRKYIYVIANNHLLRKSSQSEEIMQISKNNLQIK QIWTFKVWNHSARTGRYFHNATFVNDHQFIAVYHDATDHRFEYWEVTRQGNSWYPKEIGA TRGDFMRNDSPVQGITYDKHKKQIYLAFNDYLFKLKRSGKVLARGHFHTGREFEGISING RHLYAELAQRPELLRQRIR >gi|227861427|gb|ACKR01000197.1| GENE 15 13837 - 14589 903 250 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01395 NR:ns ## KEGG: LCRIS_01395 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 250 1 249 249 246 76.0 6e-64 MKTKNLFTSLAAAVMLSAGLAGAGVSAAEPVHAATTQTSSKKGTISIKRRSVSATVNNAN PKLYAVNQDGKIVKSMDSNYTKGQTIQLYFSNEAKNDQGSVTFYYVDSQTVDGQQCAIYV VSTDVTPSATVPSQADWSKQAQSDKKAIQDAYNNRALKYIVVSPKSKKGAKIYYAYKKSA KAKKVYFKATKKKIKYGKKYKSSMIVKNGKSRYAYIGKKRYLKTSTIKVVSVKYAPVQLS DDLKNLIVQN >gi|227861427|gb|ACKR01000197.1| GENE 16 14641 - 15153 443 170 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01396 NR:ns ## KEGG: LCRIS_01396 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 170 1 170 170 303 91.0 1e-81 MSEPYYKQEYQGERKLDGEAPVFSFDQIMKETFLRPFIWNARTTRRSFWIGIVITEVIIW IGGIITFLATVMPVSHYENDSADMINGFAFNGDHASMIVIIGMIIWGLIYLYLKLCQLGL AVRRLHDINYTGWWILLMLIPLGWIFVLYFAIQPSKQEPVKWGTYLYLDE >gi|227861427|gb|ACKR01000197.1| GENE 17 15157 - 15561 383 134 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01397 NR:ns ## KEGG: LCRIS_01397 # Name: not_defined # Def: redox protein, regulator of disulfide bond formation # Organism: L.crispatus # Pathway: not_defined # 1 134 1 134 134 247 97.0 1e-64 MSEYVVKSKLEDKEWQIANQVRDHVFVCDDVKHDAGPNPVEYLCSSVNSCIVMSAGMITK AHQLDVKNFRVENQAKTENLGHGKSVVTEMKIKVFFDSAMTRAEKEEFLAHTLHVSTVYQ TIKAAVKIYVELGK >gi|227861427|gb|ACKR01000197.1| GENE 18 15571 - 16665 1100 364 aa, chain - ## HITS:1 COG:SA2061 KEGG:ns NR:ns ## COG: SA2061 COG0477 # Protein_GI_number: 15927846 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 6 356 37 395 403 108 26.0 1e-23 MFVNPLINGYAKELGASSAFAGIIVGIMSLAAMFLRPVAGNLTDKFSKYRLSFIGGVLIF IGVMGYVLTLSSGWLLLFRLINGTGYVLCTVCMTTWLAFLVPRQHVGEAMGFYGLMNALA MALAPAVSINIYQKIGYRTSLLASAVSALLMIVAIQFVGDHALPKKRVRTQKKSFKIIQF NVLPVAILTTLFAIPYFVTQADIVTYVEQKHLTVAVGSYFLIYAVVLLIIRVGLKRYFDT VRFGVWFWLSLVSTAAYIILLAIMNNDWQMALAAALMASGYGIIYSVLQSTALLLAPIEE QGLASATFYLGLDIAMAFGPMISGVIDSALPIEWFYPVELVLVPLILVVYFIWRKRLNGA IDHH >gi|227861427|gb|ACKR01000197.1| GENE 19 16790 - 18067 1271 425 aa, chain - ## HITS:1 COG:SPy0875 KEGG:ns NR:ns ## COG: SPy0875 COG0642 # Protein_GI_number: 15674900 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Streptococcus pyogenes M1 GAS # 1 419 1 408 410 294 38.0 3e-79 MIQKFRWKFIGTSVAALFVVLLLTLGGLVWVTHVQSQNEVDRVLTALVKNEGRLSPKNAK PAFGDQHDPINRNFLGGQYNPETVYQYRYFAVTIDESHQVHVINDNNVYKINNSKIQTIT RSALENGDKSGVVALGQNQYAFRVVKNSTGEMMIVFLNETLIFNRFWLLFRVALVLGLGA LIVFALVLILVSGKAIKPTIDAYHKQQEFITNAGHELKTPLAVISANTEMEEMLGNNSEW NESNKEQVAKLTKLINRLISLARAGETGELTLSKVSFSEIVEETTKDFKSVMKKNDLVYQ VSVREGLNVLAEKHTLAEVVNILLDNAQKYCDPHGKIQVKLTKGGTLSKYAVLRVENTYR EGKGKDYSHFFDRFYRDDESHNSKKGGFGIGLAMAQELVEAFHGKILAHHKGEDIVFTVS LKIAK >gi|227861427|gb|ACKR01000197.1| GENE 20 18076 - 18513 472 145 aa, chain - ## HITS:1 COG:SPy0874 KEGG:ns NR:ns ## COG: SPy0874 COG0745 # Protein_GI_number: 15674899 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Streptococcus pyogenes M1 GAS # 1 145 77 221 222 171 59.0 4e-43 MLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLRSKERREDDFTPNKLELGDVTLNV TKQELASHNSIRLSGTETQLMNYFLLNQNKELSTEELLNHVWKNDLDANSEVVWIYVSYL RQKLQSIQSSVRIEGDKGGSYKLVK >gi|227861427|gb|ACKR01000197.1| GENE 21 18513 - 18740 236 75 aa, chain - ## HITS:1 COG:SPy0874 KEGG:ns NR:ns ## COG: SPy0874 COG0745 # Protein_GI_number: 15674899 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Streptococcus pyogenes M1 GAS # 1 65 1 65 222 77 60.0 7e-15 MKILVAEDEPQLLRVLTVAMEHAGYDVDPVDNGLKAVEHAKENSYDVIMLDIMMSVMDGI TALKKFVKVAIRLIF >gi|227861427|gb|ACKR01000197.1| GENE 22 18748 - 19359 594 203 aa, chain - ## HITS:1 COG:SPy0873 KEGG:ns NR:ns ## COG: SPy0873 COG2357 # Protein_GI_number: 15674898 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 2 201 12 211 216 217 55.0 9e-57 MNIYGKYAPTLDKLLDQMMTQFEQLNKNYEKGHGERLYEHLRGRVKSEASMEGKCKRKDL PLTPQSALRANRDSVGLRVVCNFIDDIYTCIDFIKQWDNVNVYQEKDYITNAKTNGYRSY HMIFDVTVPDEDVDGNIPGHYFVEVQLRTIAMDTWASLEHDMKYKHQIKNPEMIGNELKR VADELASCDVSMQTIRQLIREED >gi|227861427|gb|ACKR01000197.1| GENE 23 19537 - 20979 1492 480 aa, chain - ## HITS:1 COG:SP1894 KEGG:ns NR:ns ## COG: SP1894 COG0366 # Protein_GI_number: 15901721 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 1 480 1 480 480 673 68.0 0 MAIKNKVMLITYPDSLGKNLKELNEVLHKDLKGAVGGIHLLPFFPSTGDRGFAPTDYTTV DPKFGDWADVEKLGEEYYLMFDFMINHISRHSKYYQDFQKNKDQSPYADLFLSWDKFWPE GRPTQADVDLIYKRKDRAPYQEITFADGTKEKLWNTFGPEQIDLDVRQKVTQKFIKDTLT SLVQHGADIIRLDAFAYAVKKLDTNDFFVEPEIWDLLKEVQADLAGEGATILPEIHEHYS MPFKIAKHGYFIYDFALPMVTLYSLYSGKSNSLAAWLKKCPMKQFTTLDTHDGIGVVDAR DILSPEEIDYTSQELYEVGANVKKKYSSAEYHNLDIYQINTTFYSALGDDDQKYFMARLL QVFAPGIPQVYYVGMLAGKNDLELLEKTKEGRNINRHYYSRKEVAEEVKRPVVSSLLKLF TFRNNEPAFDLDGSIEVSTPNENEIQIIRKNKEQTSQAELKANLKDLTYKVVVNGQEVKF >gi|227861427|gb|ACKR01000197.1| GENE 24 20991 - 23192 2002 733 aa, chain - ## HITS:1 COG:BH2223 KEGG:ns NR:ns ## COG: BH2223 COG3345 # Protein_GI_number: 15614786 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidase # Organism: Bacillus halodurans # 6 732 3 743 748 663 44.0 0 MTKNLITFDEKNKVFHLHNDQISYLISIEDGGTLSHLYFGKSIKAYHGELRYPRLDRGFS GNLPGSLDRTFSKDSLPQEYSSAGEMDFRTPAMIVRQPDGSNAVFLTYENYQIVPGKPEL KGLPHAWVKNKDEAETLIITLKDKFSELRFDLLYTIYRDRSVIVRSTKVRNAGKETVKIE KVASMQMDFVDRDFDMITLPGAHAHERRVERNKVNQGIHVYSSIRGTSSHQMNPFVALAD PDTNEFDGDAYGFAFVYSGNHKFEVEKDPYAQTRIVVGINDYNFSWMLNAQESFQTPEVL MVYSDQGLNKMSQAFHSIIHDRIMRSKYKDQVRPIVVNNWEATYFDFDEDKLKPIVDKAK ELGIEMFVLDDGWFGHRDDDNSSLGDWQVFEKKFPHGLDHFANYVHQQGLKFGLWFEPEM ISIDSNLYQKHPDYLMHVPGRTPSPARNQYLLDLGRAEVRNNIFDQMKAILDSGKIDYIK WDMNRHLSDIYQADLPADRQGEVYHRYVLGLYDLLEKIVDRYPDLLIEGCSGGGGRFDAG MAYYNPQIWASDDSDAIDRLSIQYGTSLVYPQSMMTSHVSVSPNEQNGRITPFKTRGIVA MWGDLGYELDLTKLSESDQKAVAEQVAEYKKIRAVTQYGTFYRLKNAQEGNQCAWETVSP DKNEVVLSTVKVMASAQPYFTKTKLVGLDPNKQYEDQASHQVYGGDELMNLGIYDPVEHG DFMAYRYHFKAIN >gi|227861427|gb|ACKR01000197.1| GENE 25 23202 - 24314 1273 370 aa, chain - ## HITS:1 COG:SP1580 KEGG:ns NR:ns ## COG: SP1580 COG3839 # Protein_GI_number: 15901422 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pneumoniae TIGR4 # 1 368 1 375 376 515 68.0 1e-146 MVKVDLDHVYKKYDGNDKYSVTDFNLHIKDDEFIVFVGPSGCGKSTTLRMIAGLEDISKG TLKIGGKVMNDVAPKNRDIAMVFQNYALYPHMSVYDNMAFGLKLRKYSKEDIDKRVQRAA KILGLTDYLKRKPSALSGGQRQRVALGRAIVRDAPIFLMDEPLSNLDAKLRVTMRAEIAK LHQQLKTTTIYVTHDQTEAMTLADRIVIIKDGKQQQVGSPLEVYNKPANVFVAGFIGSPA MNFFHVILKDGKIIDKDNHDFEIPVPEGKLKALKEKGYDGKELIFGIRPEDVHTEQVFLE TYPDNVVEAKVVVSELLGAETQLYTKVGNTELVSKVDQRDYAKPGNMVKMGFEMNKAHFF DPETEVAVEN >gi|227861427|gb|ACKR01000197.1| GENE 26 24341 - 25174 925 277 aa, chain - ## HITS:1 COG:SP1895 KEGG:ns NR:ns ## COG: SP1895 COG0395 # Protein_GI_number: 15901722 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 277 2 278 278 374 74.0 1e-104 MEKENKSKKFWDYALLIVGGILILIPLLYTFLSSFKTTKQIMNHFFAWPNPWTSVNFQRL FADGVMGYFWNSIVITVLSIVLVMIFVPMAAYSIARNMSKHTAFNWMYILLIIGIFVPFQ VIMIPITVMMSKIGLANMWGLIILYLTYAVPQTLFLYVSYIKQSVPESLDEAAEIDGANK ITAYFKIIFPLLKPMHATTLIINAMWFWNDFMLPLLILNKDSKMWTLPLFQYNYTGQYFN DYGPSFASYVVGIITITIVYLIFQKNIIAGMSNGAVK >gi|227861427|gb|ACKR01000197.1| GENE 27 25189 - 26064 1093 291 aa, chain - ## HITS:1 COG:SP1896 KEGG:ns NR:ns ## COG: SP1896 COG1175 # Protein_GI_number: 15901723 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Streptococcus pneumoniae TIGR4 # 4 290 10 296 296 407 75.0 1e-113 MKSKSFIEKHWGWLFLIVPLILQAIFFYFPLFQGAFYSFTNWTGLTYNYKFVGINNYKLL LMDQNFAKSIGFTAILTISLIIGEIVIGILVARALNSKIKGQTFFRAWFFFPAVLSGLTV ALIFKQVFNYGLPAIGNALHIEWLQTSLLGTNTGAVIATIFVLLWQGVAMPIIIFLAGLQ SIPDEIKEAAEMDGANSRQIFWNIELPYMLPSISMVFILALKSGLTAFDQIFAMTAGGPN NSTTSLGLLVYNYAFNNNSFGYANAIAIVLFILIAIVSFIQIKISNKYAVD >gi|227861427|gb|ACKR01000197.1| GENE 28 26077 - 27333 1239 418 aa, chain - ## HITS:1 COG:SP1897 KEGG:ns NR:ns ## COG: SP1897 COG1653 # Protein_GI_number: 15901724 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 3 416 2 416 419 480 55.0 1e-135 MKKWLKRIALISLVATMALSLTACGQNKSSNSGKKVTIEYFNQKKEMSATLKEIIKDFEK KNPDIHVKEVDVPNAGTVLKTRMLSGDVPDVINIYPQNIDFQEWAKAGYFEDMTHASYIK NIKNHYADSFKINGKIYNALLSANVYGFFYNATEFKRLGIKAPKTWAKFEQIVKKIKASG KAPFAVAGTEPWTLNGYHQLSLATVTGGAKQANQLLRFSAPNGIKVNNPYIQKDFTRLNL LRENAQQNWRGASYNDAVVSFANGKSLIMPNGSWALPMINQQKPKFKVRTFAFPAAKAGH EMTVGSGDLALSISSKSKHKKAAEKFVAYMTTPAAMQKYYNVDGSPVAVKGVKQRGINSQ LGGLSTLAFTKHDMVWLAQDWTSENDFFNLTASYLMTGNKQQMVNDMNTFFNPMKASN >gi|227861427|gb|ACKR01000197.1| GENE 29 27519 - 28475 925 318 aa, chain + ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 315 1 316 321 166 35.0 6e-41 MVVTIKDIAKEANVSIATVSRYINQNGYVGIESALKVKEAIKKLGYKVKGTVNSVSKLNL IEVDFPKINNPFYSELFEYLAFYLQEKGYDCILHLDHYQSQDINYYLERFKQKEIAGLIT SSPIKIPKKGLKIKFPIVSFDRKISPQIPTVQSNNYDAGMQIAQSVLKQKKKKIIIIAGA KEDYYPISDRIKGMIRVFNTFDSKFDLRSLSASDSIIAKKIAILQFLKDDEYDAICCTDD ITALLAKECADYLGKVPLITGFDGSHLIQSLFPNLISARQHTKEIAELMCDLLLRQINDP SVSLESVYTLPVSLINQN >gi|227861427|gb|ACKR01000197.1| GENE 30 28532 - 28765 323 77 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01409 NR:ns ## KEGG: LCRIS_01409 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 77 1 77 77 127 100.0 1e-28 MMTNEKIIALVKEEYLNKIPKIFRKHAVEGTCKLIAREHPDLYKAFEDGEPTAEEKQQMT ELINGIFEQRMKKHKML >gi|227861427|gb|ACKR01000197.1| GENE 31 28890 - 29885 1075 331 aa, chain - ## HITS:1 COG:lin2619 KEGG:ns NR:ns ## COG: lin2619 COG2017 # Protein_GI_number: 16801681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Listeria innocua # 8 330 11 349 353 162 33.0 7e-40 MKTSFRKYGRKDNKDLCEITLENDHGMVVKVLNYGATLEKVLLDGENMILSLDKPEDYDK ERNYLGGTVGRIAGRVRRGLWRHGLELHQLPINEGPNHIHGGIGTDTEIWDFRPSCNEKG ARVDLTLFDPDGHNDYPGNLKLHARYELDNNNILHYSLGAMSDKLTIFNPVNHTFFTLGE KKMINDLQLQMNADYYIPVDETGLPDRGMEKVDGTAFDFRKKKRVGDALEADDPQIKNRD GMDHPFILDGNMPNAVLTSAKHKLTVTTNAPSLILYTGNGFDHTGKYTADFGPYCGITFE AQVPPAEGDDLGRITLLPGEKFKRTVDWKFE Prediction of potential genes in microbial genomes Time: Wed May 25 06:51:29 2011 Seq name: gi|227861415|gb|ACKR01000198.1| Lactobacillus crispatus JV-V01 contig00214, whole genome shotgun sequence Length of sequence - 15189 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 6, operones - 4 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 60 - 101 5.2 1 1 Op 1 4/0.000 - CDS 113 - 1582 1473 ## COG4468 Galactose-1-phosphate uridyltransferase 2 1 Op 2 . - CDS 1601 - 2764 1426 ## COG0153 Galactokinase - Prom 2830 - 2889 7.4 - Term 2863 - 2909 8.1 3 2 Op 1 . - CDS 2930 - 4933 1826 ## COG1874 Beta-galactosidase 4 2 Op 2 1/0.000 - CDS 4944 - 6863 2118 ## COG2211 Na+/melibiose symporter and related transporters - Prom 6905 - 6964 8.7 - Term 6969 - 7016 3.1 5 2 Op 3 . - CDS 7055 - 8059 749 ## COG1609 Transcriptional regulators - Prom 8094 - 8153 9.6 + Prom 8195 - 8254 11.1 6 3 Op 1 . + CDS 8288 - 10168 1372 ## COG3250 Beta-galactosidase/beta-glucuronidase 7 3 Op 2 . + CDS 10152 - 11105 918 ## COG3250 Beta-galactosidase/beta-glucuronidase + Prom 11111 - 11170 11.9 8 4 Tu 1 . + CDS 11213 - 12205 1323 ## COG1087 UDP-glucose 4-epimerase + Term 12268 - 12326 8.9 9 5 Op 1 . - CDS 12316 - 13191 445 ## LCRIS_01419 abortive infection protein 10 5 Op 2 . - CDS 13188 - 13778 401 ## LCRIS_01420 abortive infection protein AbiGI - Prom 13868 - 13927 7.8 + Prom 13932 - 13991 8.6 11 6 Tu 1 . + CDS 14133 - 15164 855 ## COG1609 Transcriptional regulators Predicted protein(s) >gi|227861415|gb|ACKR01000198.1| GENE 1 113 - 1582 1473 489 aa, chain - ## HITS:1 COG:SP1829 KEGG:ns NR:ns ## COG: SP1829 COG4468 # Protein_GI_number: 15901658 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 3 485 4 488 491 494 51.0 1e-139 MKVIEKFADEVINSGAYEPLDRVYVINKIRALVGDEASSVEANDEQTSVKQLVDLAVQNK KISDDVTSREVLNDQLYDLITPTPSKTNGIFWQKMQKSPEKATDWFYKLCENNNYVKKEA IAKNVVFSGTSSKGHGLEITINLSKPEKDPKAIAAAAHATGKKYPQCALCLENEGYLGGY GKNARSNLRIIRMNIGGRPWGFQYSPYAYFNEHCIFLDQKHIPMVINQQTLINLVEIEKT LPHYFVGSNADLPIVGGSMLAHEHYQGGRHTFPMMKAKIKKNVVFDDYPEVVAGIVDWPM SDLRLISDNSLDLIELGAKIINFWDHYSDSARQIKAFDGKTRHHTVTPIMHREGKNFVLD LVLRDNNTSENYPLGIFHPHKELWHIKKENIGLIEVMGRAILPGRLKSELEEVKKYWLGQ DNKMAISHKEWADQIKAEQNITAENVDAVMQQALVEVFEQVLQDAGVFKNNADGDEGWDK FITALTRQI >gi|227861415|gb|ACKR01000198.1| GENE 2 1601 - 2764 1426 387 aa, chain - ## HITS:1 COG:SP1853 KEGG:ns NR:ns ## COG: SP1853 COG0153 # Protein_GI_number: 15901681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Streptococcus pneumoniae TIGR4 # 1 385 5 389 392 405 55.0 1e-113 MNKEELLKEYETTFGEKGKDVFFSPGRINVIGEHTDYNGGHVFPAAISLGVYGVYGPRED KKVCLFSGNVDGDIVEFDIDDTTVEKDDRFWANYFKGMITYLREKYDNIDHGFNLYIKAN LPSGSGLSSSAAIEMLMGIILKDEFNLDVDRIALAKMGQRTENEFVGLNSGIMDQFACIM GKKDSAIFLDCNTLDYEYKPLALGDYEIIIMATNKPHTLADSAYNDRVRECHDAVKKLQA KLDIKTLGELDNDTFDEYAYLINNETEIKRARHAVSENQRTLRATKAMQDGDLEKLGRLI DASHVSLHYDYEVTGQELDTLAEASWAQPGVLGARMIGGGFGGSAIAIVKKDQAEAFKKN VGKIYRDKIGYDASFYDAEIVDGTKRI >gi|227861415|gb|ACKR01000198.1| GENE 3 2930 - 4933 1826 667 aa, chain - ## HITS:1 COG:BH3701 KEGG:ns NR:ns ## COG: BH3701 COG1874 # Protein_GI_number: 15616263 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase # Organism: Bacillus halodurans # 3 665 5 670 672 654 47.0 0 MTQLKRFLYGGDYNPDQWPEDTWSEDIKVFKKADLNSATINVFSWSLLESREGQYDFSKL DRIIQELSDANFDIVLATSTAAMPAWMFKKYPDVARVDYQGRRHVFGARHNFCPNSKNYQ VLASKLVEKIAERYSNKPHIAVWHVNNEYGGNCYCENCQNAFRTWLKSKYQTLDNLNEAW NMNVWSHTIHDWDQIVVPNELGDAWGPEGSETIVAGLSIDYLRFQSDSLQNLFQMEKSII KKYDTNTPVTTNFHGLPNKMVDYQKWAKDQDIISYDSYPTYDAPKYLPAFLYDLMRSLKH QPFMLMESAPSQVNWQPYSPLKRPGQMAATELQAVAHGADTVQFFQLKQAVGGSEKFHSA VIAHSQRTDTRVFHELEDLGKKLKKIGPTVLGSKTKARAAIVFDWDNFWSYEYVDGISQD FNYMESILDYYRQFYERNIPTDVISVDDDFSQYDLVVAPVLYMVKAGLSKKINAYVKNGG NFVTTYMSGMVNNSDNVYLGGYPGPLKDVMGIWVEESDAIVPGHKTIVSLNGKDYKAGLV CDLIHPENAKVLAKYSNEFYAGTAAVTENKYGQGKAWYVGTKLDHIGLTQLFNHIVLTAN VESLVGDSHKLEVTKRVTQSGQELYFVLNMSNEERKLPQKFVEYQNILTGQQAHDQMKAW DVQILVK >gi|227861415|gb|ACKR01000198.1| GENE 4 4944 - 6863 2118 639 aa, chain - ## HITS:1 COG:STM4299 KEGG:ns NR:ns ## COG: STM4299 COG2211 # Protein_GI_number: 16767549 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 16 450 10 430 476 131 25.0 4e-30 MTHSDKSGKQILSYASFCLGNLGHSAFYGVMSTYFIIFITSSMFSGLNQSVADKLIGLIT GLMVVIRIAELVIDPILGNIVDNTKTRWGKFKPWILIGTLVSAALLLVLFTGIFGLAQKS WILFAILFVLIYISFDVFYSLSDVSYWGMVPALSEDSHARGIYTSLGAFSGTIGWNGLTI IVVPLVTAVTYAVTGKHEEGAPGWLAFAAVISALAIVCALIVCFGTKEKHNIIRNSAKQK TSLGQVFGAIFHNDQILWPSLAYLLYSLAYVITNGVLFYMYKFVIGKPNDFWVVGVIATI IGFCISPMFPILNKYIPRKWLFIAGQTCMVLAYVLFIFGRDNVFLMDLGLVLLNINFAQL VTVLTLTDAIEYGQLKNGQRNEAVVLAVRPMIDKFTGAVSNALVGYIAIAAGMTGSATAA DMTAHDISTFNMVALYIPLALAVLSIVVFLTKVTLSEKKHAEVVEELKDQLAEGKIEKNE SNTQVRPQDQTIYAPADGKLMKMAEVIDEDGKPFPGKGFAIKPDSGNIYAPFDGVVRFTF GTKHAFEIVSNNGLQVVVHVGLGTVNLRGEGFETYYDDGQKVKKGDLLLEFDRNLALKNG YQDTVVTFYTQPGRIVKSSEIEAGKIVEHGEKVLDVQFK >gi|227861415|gb|ACKR01000198.1| GENE 5 7055 - 8059 749 334 aa, chain - ## HITS:1 COG:BS_lacR KEGG:ns NR:ns ## COG: BS_lacR COG1609 # Protein_GI_number: 16080470 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 329 1 328 330 224 38.0 2e-58 MTTIKEIAQESGYSSATVSRLLNNDPNLSITADTKNKILEIANKLGYWKDHQEKKIRPTI ALLYRVNHEEQLQDEYFTSLKQALISTVEAESLQMKTFYDADDLIKHASLFQGFIGVGAA PIENATLKKLHEVLPNGVFVDTNPAPELFDSIRPNLTLTVKNAIDLFLDKGYQRIGFIGG IGPKHDHIQEVDVRATAFAEYIKVRGKSDELMFVNGPFSVANGYKLGKEVLAKCKNKLPD AFLIASDTLAVGVLQAFNENNVNVPKDTAILSINNSNVVKYVSPPLSSYNIDQQEMIDMA LNMLTNLIIQPNRAHIDVNMNTNLVVRKSFVPKK >gi|227861415|gb|ACKR01000198.1| GENE 6 8288 - 10168 1372 626 aa, chain + ## HITS:1 COG:BH2723 KEGG:ns NR:ns ## COG: BH2723 COG3250 # Protein_GI_number: 15615286 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Bacillus halodurans # 3 622 5 614 1014 598 47.0 1e-171 MKANLSWLDDPEVFRVNQVPAHSDHPYFKNYREWQKQTSSFVQSLNGDWCFKFSANPQTR PVDFFKTDFDSSSFDHIPVPSEIELNNYAQNQYINTLFPWEGKIYRRPAYTINQKATDSF SKGADNTVGSYIKHFDLNSTLRGRDVHIVFEGVERAMYVWLNGHFVGYAEDSFTPSEFDL TPYIKNKNNILAVEVFKHSTASFLEDQDMFRFSGIFRSVELLGLPETHLTDLDLKPEVTN NYQDGIFNAQLHFTGKNTGSVHLFVEDINGKTLLEKKAPISLTIKIEKELFKNVHLWDNH DPYLYQLIIEVHAENGDLLELIPYQFGFRKIEINSDKVVLLNGQRLIINGVNRHEWNMKR GRSITLTDMKQDIHAFKENNINAVRTCHYPNQIPWYYLCDQNGIYVMAENNLESHGTWQK MGQVEPSDNVPGSIPEWREAVIDRARNNYETLKNHTAILFWSLGNESYAGENIAAMNKFY KAHDHSRLTHYEGVVHTPELKDKISDLESWMYLPPKDVEEYLKNKPQKPFLECEYMHDMG NSDGGMGSYIKLLDQYPQYLGGFIWDFIDQALLVHDPVSGQEVLRYGGDFDDRHSDYEFS GDGLMFADRTPKPAMQEVKYYYGLHK >gi|227861415|gb|ACKR01000198.1| GENE 7 10152 - 11105 918 317 aa, chain + ## HITS:1 COG:BH2723 KEGG:ns NR:ns ## COG: BH2723 COG3250 # Protein_GI_number: 15615286 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Bacillus halodurans # 7 317 728 1012 1014 145 31.0 8e-35 MAYTNNLHIIYGDATLGINTPDKQYIFSYEKGGLESLKIKGKEWFYRVPTPTFWRATTDN DRGNGFNLKAAQWLGADMFSHCTEIQLKVDQHDFADLPIAPLNNQFSNHEYASKVEITFI YETLTIPKTKVEITYQINNNGHVTIKMRYFGKKDLPPLPVIGMRFIIPTLASGFEYEGLS GETYPDRMAGASAGSFKIKGLPVTKYLVPQENGMHMQTHKLKITRNTTLNNADHSNEDFD LTVEQTDKPFNFSCLPYTAEELENATHIEELPLARRTVLVIAGAVRGVGGIDSWGTDVED QYQIDPSQDHEFSFRLN >gi|227861415|gb|ACKR01000198.1| GENE 8 11213 - 12205 1323 330 aa, chain + ## HITS:1 COG:lin2620 KEGG:ns NR:ns ## COG: lin2620 COG1087 # Protein_GI_number: 16801682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Listeria innocua # 1 327 2 328 328 402 59.0 1e-112 MKVLVVGGAGYIGSHAVRELVKEGNDVVVLDALYTGHRKAVDPKAKFYQGDIEDTFLVSK ILRDEKIDAVMHFAAYSLVPESVKKPLKYYDNNVTGMISLLQAMNDAGVKYLVFSSSAAT YGIPKKLPITEDTPLDPINPYGETKMMMEKIMAWADKADGIKYTALRYFNVAGAASDGTI GEDHAPETHLIPNILKSAISGDGKFTIFCDDYDTKDGTNVRDYVQVEDLIDAHILALKHM METNKSDVFNLGTAQGYSNLEILNAAKKVTGIDIPYTMGPRRGGDPDSLVADSTKARTIL GWKPKHESVDDVIATAWNWHKSHPKGYEDK >gi|227861415|gb|ACKR01000198.1| GENE 9 12316 - 13191 445 291 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01419 NR:ns ## KEGG: LCRIS_01419 # Name: not_defined # Def: abortive infection protein # Organism: L.crispatus # Pathway: not_defined # 1 291 1 291 291 533 98.0 1e-150 MKNYVDEKQFKADVRRYAREHNIKGNEIGRLWQEIMLDDLLERISVSKYRDNFILKGGFL LSAIVGIDKRSTEDIDAEIKGLDLTEKQIAKVFEEICQIKLAGDLLSISLSETEQIHEHE EYKGYRLHFNASFRKIRYPLKVDVSTGDVITPREIEYSYKLHLEDRHINIWAYTMETIVA EKLETVITRGIANTRMKDLYDLFILQRERINLATLKSAFANTTNYRESIFWTGQDMDYKY CLRQVDIIAENSNMQNLWNRYVRKHPFAKGITFTQVIQAVQTWLTKLEFEK >gi|227861415|gb|ACKR01000198.1| GENE 10 13188 - 13778 401 196 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01420 NR:ns ## KEGG: LCRIS_01420 # Name: not_defined # Def: abortive infection protein AbiGI # Organism: L.crispatus # Pathway: not_defined # 1 196 1 196 196 379 100.0 1e-104 MKQKSLISQLAKIHNGTITHRELALNGVSSYSISKAVQDGTLEKIRPGIYLFGDDTEDIF YSLQQKYKKGIYSLETALYLWGLSDQYPFSLDMTFPRGYNNPTLDIEINPHIQTKSLATQ GITQTESFNGNVINLYTPERTLAEILRPINAVDIEIITNAFKMWNKEKKKDINTLMSFAE KFRVTRKVNSYLEVLL >gi|227861415|gb|ACKR01000198.1| GENE 11 14133 - 15164 855 343 aa, chain + ## HITS:1 COG:ZebgR KEGG:ns NR:ns ## COG: ZebgR COG1609 # Protein_GI_number: 15803616 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 EDL933 # 1 338 1 325 327 171 31.0 1e-42 MASIRDIARIAGVSPASVSRILNNDPTFRINEASRARVIETAKRLHYSKSQKHPGPKQTD NQLSIALIMRYNKSREITDPYFLNLHKGINEEAKKWHLRIEQPFRIEDDNKNWADLAKFG AVLIEGEMTPVAIKQIQSINPHIIFIDVNTNIHNCNIVRNDFVEETSHILDTLYNLGHKN IVYIGGKSLVLDLDGKIACEKNDLRELTYLSWMKLHNLDQYCHSFITDWSTNSAFEAGKE ILKLQQRPTAVVVGSDPMALGVYKAFSDAGVNIPDDISVVSFDDVDINRFLTPTLSSVYM NTEEMGKTAVRLAKDLITEDIQIPLTITCHSQLNIRDSISKKK Prediction of potential genes in microbial genomes Time: Wed May 25 06:51:37 2011 Seq name: gi|227861413|gb|ACKR01000199.1| Lactobacillus crispatus JV-V01 contig00215, whole genome shotgun sequence Length of sequence - 614 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:51:39 2011 Seq name: gi|227861407|gb|ACKR01000200.1| Lactobacillus crispatus JV-V01 contig00216, whole genome shotgun sequence Length of sequence - 5586 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 4, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1283 960 ## LGAS_0410 adhesion exoprotein - Prom 1335 - 1394 7.8 - Term 1423 - 1477 8.7 2 2 Op 1 . - CDS 1497 - 3440 1289 ## gi|227878993|ref|ZP_03996891.1| conserved hypothetical protein 3 2 Op 2 . - CDS 3484 - 4026 286 ## FI9785_169 putative transposase - Prom 4118 - 4177 3.2 4 3 Tu 1 . - CDS 4259 - 4504 244 ## gi|227878995|ref|ZP_03996893.1| hypothetical protein HMPREF0506_1894 - Prom 4553 - 4612 2.2 5 4 Tu 1 . - CDS 4743 - 5126 416 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs Predicted protein(s) >gi|227861407|gb|ACKR01000200.1| GENE 1 2 - 1283 960 427 aa, chain - ## HITS:1 COG:no KEGG:LGAS_0410 NR:ns ## KEGG: LGAS_0410 # Name: not_defined # Def: adhesion exoprotein # Organism: L.gasseri # Pathway: not_defined # 306 427 1713 1835 2457 141 63.0 5e-32 MLSAKNYYGRLVKLKPKQDHFSLRKLSIGLISVTIGITLYLGVDNSYVMADTNLRDNNNQ QLAGSGNGTNIINDKVKIPTGAFQSKQMQTENCKVNNQMLDKTEVTNSTKNSSTLNVENS KTADLSRFDYSLYTKKVKSFEFRNSDNNDVIRTVILNKPTGVETVTMTLNVSCLKGRKHQ HRSHTSTRSSIYNYKPQVIAEVNTSNNPLPKISILEKNVLPKTFFQVDKNTFLTQQDKEN YEKFISVNKNDISIELPAFSINDIDIPGYSYHINAKKTTPGAGLGKEKFYIYTESPQTVV IDYTPITVKVEHKIITVTPTDPKTPSDKLPDNPGKNYPKGVDKTDLNKTITRKITVIKPD GTKEAHDQPVNLTRTATVDEVTGKVTYRDWVPGTWDNFDVPAVSGYTPSQSNVPKQSVTD GTKDTTV >gi|227861407|gb|ACKR01000200.1| GENE 2 1497 - 3440 1289 647 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878993|ref|ZP_03996891.1| ## NR: gi|227878993|ref|ZP_03996891.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 647 1 647 647 1142 100.0 0 MDKLHKQQVAKRQRFAIKKLTVGTASVLVGLTFIISGNAKADTTVAAQNTFTTQVTDPQV SAHSSNIRISDESNTVVHQTSSTLVPNKTTTPAQQMPIIHKTQQNNHCPVSTTNTAKQPL PSKYNITMNFRDVTLHKPIQVISNGHYVFKQPFKQTTIRPGDSVDQEFTVAGYKLMNSEV LNKYFYFDKQGNACLKKGITTQDININLDYASLSPIKVEYVDVDNGHILASIVLDSFWMA PESPQHRAGDKKATDASRYEAAAINIPGYKLVSEPVLKGKITGQTRNSLADPNYVYLTFK YKKVIKNNSDSNRTELLLVPEETNLPYKLFTIAGSYGERIDLNNGNYEKKMSEEISHYEK QGYSYIGSTGTYLNSDYFNWYAKGIHVYLLPNKPVTVRYIDEQGNVLRNNDTLAFNLDNP NQKNNGVNPQKGWYAKGPWQVQPKKIKGYRLVRTLGATSGQYTVYQYITTFVYTKDTDPT DPKTPETTTTTTTDPKTPSDKLPDNPGKSGQTVPVNIHIPDGYQLVPGESVPTFYTFKDG NPNQIISCWLIPTNGGQPTTNDHQGQGTPATNTPTNTTPNGNAVTGKLEGNVPNMQTGKT ITFQPTTAKDNQLPQTGNDNSLTTVAGIIVSLLTSCLAVLGINKHQG >gi|227861407|gb|ACKR01000200.1| GENE 3 3484 - 4026 286 180 aa, chain - ## HITS:1 COG:no KEGG:FI9785_169 NR:ns ## KEGG: FI9785_169 # Name: not_defined # Def: putative transposase # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 180 55 285 285 323 70.0 1e-87 MLIWQTEIGIESQRRFCKFFVGLSHSRFNRRARMLLPLMRCIRQDWNQEVKTAGEFLIID SFPVPVCQPIRNYRVKIFRGISDIGYKATKKIYYYGFKVHAIVSDDGYVLWTPYRRNMKG AKKHNDHQLMAIRRTIESDFSLLSYYNAENNWARSLAGFQQRLEIAILAYNIAYCLERFN >gi|227861407|gb|ACKR01000200.1| GENE 4 4259 - 4504 244 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227878995|ref|ZP_03996893.1| ## NR: gi|227878995|ref|ZP_03996893.1| hypothetical protein HMPREF0506_1894 [Lactobacillus crispatus JV-V01] # 1 81 1 81 81 157 100.0 2e-37 MVKCYTPFIYWIDTTGLDWQSDEIIHLTITDLFGNIVFSHLFKPVKIESWDPTQQGFHTK ALAPPTYSIYNKLRVVLVKSF >gi|227861407|gb|ACKR01000200.1| GENE 5 4743 - 5126 416 127 aa, chain - ## HITS:1 COG:YPCD1.91 KEGG:ns NR:ns ## COG: YPCD1.91 COG1961 # Protein_GI_number: 16082774 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Yersinia pestis # 1 126 1 126 183 88 42.0 3e-18 MTEYGYARVSTKGQELADQINQLQTAGISEDCIFSEKFTGTTTDRPQFAKLTQLAKPGDV ITVTKLDRLARNTREALNVIDPLMNQGVKINVLNIGMLENSTVGKLVKTILLAVAEMERD MIVDRTQ Prediction of potential genes in microbial genomes Time: Wed May 25 06:52:15 2011 Seq name: gi|227861402|gb|ACKR01000201.1| Lactobacillus crispatus JV-V01 contig00217, whole genome shotgun sequence Length of sequence - 3416 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 339 - 372 1.0 1 1 Op 1 . - CDS 411 - 632 327 ## COG4892 Predicted heme/steroid binding protein - Prom 663 - 722 5.2 - Term 659 - 688 0.2 2 1 Op 2 . - CDS 725 - 1594 879 ## LCRIS_00067 phospho-beta-glycosidase 3 1 Op 3 5/0.000 - CDS 1591 - 2538 871 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 4 1 Op 4 . - CDS 2552 - 3415 789 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases Predicted protein(s) >gi|227861402|gb|ACKR01000201.1| GENE 1 411 - 632 327 73 aa, chain - ## HITS:1 COG:CAP0144 KEGG:ns NR:ns ## COG: CAP0144 COG4892 # Protein_GI_number: 15004847 # Func_class: R General function prediction only # Function: Predicted heme/steroid binding protein # Organism: Clostridium acetobutylicum # 2 55 64 117 143 63 53.0 7e-11 MRKFTKETLSNYNGKNGRPAYIAFNGTVYDVTNNTHWLNGENNGIHAGCDVSLDFAQSPV LELAHINQVGIYN >gi|227861402|gb|ACKR01000201.1| GENE 2 725 - 1594 879 289 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00067 NR:ns ## KEGG: LCRIS_00067 # Name: arbZ # Def: phospho-beta-glycosidase # Organism: L.crispatus # Pathway: not_defined # 1 289 1 289 289 577 99.0 1e-163 MIFGDNREAVIKNIKKAANERNFTAKVEIGDPQMSLDQRLKLVNDYWNKRNTFSSKLNNR IGHLLFGTLSRALAGSTEFVGLENLNNLPIGGAILTSNHYNQVDSLPMKLLANKMHHQLS IVIEDTNLMLPGFFRYLMNYVGTIPLVQSPSYIGNEFPKHLSAALAKNNWVLIYPEQEMW WNYRKPRKLQRGAYYFAAKQNVPVISTFVEIKDLPKIEKKDPNFYETKYIVHVLPPIFPD VSLNANENAHKMMELDYRQKVAAYEKIYGKKLNYDFLDWDIAGWRGHFS >gi|227861402|gb|ACKR01000201.1| GENE 3 1591 - 2538 871 315 aa, chain - ## HITS:1 COG:HI0258 KEGG:ns NR:ns ## COG: HI0258 COG1442 # Protein_GI_number: 16272216 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Haemophilus influenzae # 2 224 38 250 330 82 25.0 1e-15 MTIPIFYSISDDFTKYAAVSLNSLVKHTDPNKDYTVYFLNQNLSSKHQKALSDLSSPNVH VKFFHIDNQLVQPIQNRKENFLRADFFTMSIFYRLFIPELFPEYDKVIYIDSDTIVNDDL AKLYNSELGDNLFAACTDSSIQYVDKMIKYIKNVLALDPKKYINSGMLVMNARAFRAEHF IDHFMTLLEKYHFDCIAPDQDYLNEIGEGRILHLNPRWDAMPNENTEPLTNPGLIHYNLF FKPWHFANVQYAQYFWDSAKQTQFFDELKNELNNYTDDERAADREKLDHMLAKEDKTEQD PNNWAKVKKREAVTL >gi|227861402|gb|ACKR01000201.1| GENE 4 2552 - 3415 789 287 aa, chain - ## HITS:1 COG:jhp0147 KEGG:ns NR:ns ## COG: jhp0147 COG1442 # Protein_GI_number: 15611217 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Helicobacter pylori J99 # 5 254 51 341 377 79 24.0 7e-15 PKKDYTITLLVQQISDEHKKSLEDLSTDNIHVQIFHIDDDMVKPIHNTKENYLRAQFFTM SIFYRLFIPELFPQYDKAVYLDADTIICTDIAKMYEIDIADNMFASCPDLSIRYMPLLQK YIKECQGIFPAEKYINNGVILFNMKAFRDKKFVDKFYYLMNKYHFDNVDPDQAYMNEICE DKIYHLPKEWDAMPNESIPEIQDPKIVHYNLFFKPWHFADVQYGHYFWYVAKTTPYYDEL KQQLDNFTDEDRQKARADLEWMAKKVDMIVKEPNTWAKVKQTESVKI Prediction of potential genes in microbial genomes Time: Wed May 25 06:52:22 2011 Seq name: gi|227861391|gb|ACKR01000202.1| Lactobacillus crispatus JV-V01 contig00218, whole genome shotgun sequence Length of sequence - 10901 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 3, operones - 2 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 114 - 950 695 ## LCRIS_00070 lipopolysaccharide biosynthesis glycosyltransferase 2 1 Op 2 . - CDS 967 - 1740 461 ## LCRIS_00071 1-acyl-sn-glycerol-3-phosphate acyltransferase - TRNA 1908 - 1980 81.8 # Lys CTT 0 0 - Term 1853 - 1904 6.4 3 2 Tu 1 . - CDS 2113 - 2334 365 ## LCRIS_00072 hypothetical protein - Prom 2545 - 2604 9.0 - TRNA 2452 - 2524 81.8 # Lys CTT 0 0 4 3 Op 1 8/0.000 + CDS 2661 - 3377 1032 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 5 3 Op 2 . + CDS 3448 - 5301 1660 ## COG5002 Signal transduction histidine kinase 6 3 Op 3 . + CDS 5291 - 6643 1312 ## LCRIS_00075 hypothetical protein 7 3 Op 4 4/0.000 + CDS 6646 - 7470 886 ## COG4853 Uncharacterized protein conserved in bacteria 8 3 Op 5 3/0.000 + CDS 7483 - 8280 781 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 9 3 Op 6 1/0.000 + CDS 8360 - 9622 1608 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain + Term 9655 - 9700 5.5 + Prom 10048 - 10107 4.8 10 3 Op 7 . + CDS 10140 - 10619 343 ## COG1576 Uncharacterized conserved protein + Term 10626 - 10665 2.7 Predicted protein(s) >gi|227861391|gb|ACKR01000202.1| GENE 1 114 - 950 695 278 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00070 NR:ns ## KEGG: LCRIS_00070 # Name: arbX # Def: lipopolysaccharide biosynthesis glycosyltransferase # Organism: L.crispatus # Pathway: not_defined # 1 278 1 278 278 547 98.0 1e-154 MNILFCGDENAQDGVLISTLSLIKNSGAQELHLYILTMEAHSDERKYHPFSQHAADFLRS LVKKANPNSTVELIDCTKLFEQEPPTANMNTRFTPYAMLRLFADQLPQIPDRILYLDDDI VIRGDITTFYNEDITGIELVGVLDYWGRFFFHNLKTKRAFDYLNSGVLLLNMKKIKQTDL FAEMRHMMQVKQMFLPDQSAINKLAVAKRVAPRRYNEQYHLQKNTKIQHFTTSFRFWPYF HTQTVKPWDVDRVHSVLHLHEYDDLLNEYLKLRNNLKK >gi|227861391|gb|ACKR01000202.1| GENE 2 967 - 1740 461 257 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00071 NR:ns ## KEGG: LCRIS_00071 # Name: arbV # Def: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: L.crispatus # Pathway: not_defined # 5 257 1 253 253 512 99.0 1e-144 MEGKMKRIYYYQKTTDDVVDSHDQNFSLPDNYVILPNSLGARIWSTTARHLACTFGWVVF RFFDHVKVVGQEKLKQVNGGYFIYGNHTRPMGDVFTSLTIFPIKNFYAIANQANWGIPFI GKYLVRYGGLPVGKNMKQSLKLIKAIQTVIKDKKGEILIYPEAHVWPYYTKIRPFDATSM HFPVKLNAPSFVMTKTYHKKWLSKRPSAVIYIDGPFYPDTNLSRKEAQNKLHDEIWQVMK QRAKNSDYEYCQYIQKK >gi|227861391|gb|ACKR01000202.1| GENE 3 2113 - 2334 365 73 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00072 NR:ns ## KEGG: LCRIS_00072 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 73 1 73 73 127 100.0 9e-29 MNEAVFFNPGDAIASSHDFKEARRSAQIIKAERPTGRQIVIAKNDQSGVYAVYYADHMKQ DQQGTAYHIQDKL >gi|227861391|gb|ACKR01000202.1| GENE 4 2661 - 3377 1032 238 aa, chain + ## HITS:1 COG:lin0315 KEGG:ns NR:ns ## COG: lin0315 COG0745 # Protein_GI_number: 16799392 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 238 4 237 237 329 72.0 3e-90 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD GLEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR DIVKKAEAASQEETDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVM TREHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGYYVKQPSEE >gi|227861391|gb|ACKR01000202.1| GENE 5 3448 - 5301 1660 617 aa, chain + ## HITS:1 COG:lin0316 KEGG:ns NR:ns ## COG: lin0316 COG5002 # Protein_GI_number: 16799393 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 12 615 7 610 610 475 42.0 1e-133 MKKFKARLNSTFNSINTKIAIVFMLMLLATIEVIGAYFTRQLEQNSIENFQSSIQIQTIV SNQLANQLTSDNKNTNDRLNQIVNDYNNDAISEIIVVDNKDTIRAVSNLNDKSKIGQRIN NTDVKQVISTGHQINKVVDDHGNYMIQISPLTSGNGSNNTVGAVYVKASMQDVFNNLRQI SLTFLIASLIAALLGAFLSLVISRAITQPIEEMQKQALHIADGDYSSQVKIYSNDELGQL AKAFNTLSVRIERSQEESDSERRRLDSVLSHMSDGVLATDRHGNVSVVNHMALNFLNKKE DEVINKPIAEVLGLEDTSSQDLISSQKEIVITLDPGTRDEIILHASFSLIKRVTGFVSGS VCVLHDVTEQQKNEDSQRQFVSNVSHELRTPLTSLQAYIEALNEGAWKNPEIAPKFLEVT QQETSRMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKEKKKY TIKRELGSQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRMTQNQNHVILSISDQG LGIPRKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSSEGKGSTFY ISLPYEPMTEEDDWDEV >gi|227861391|gb|ACKR01000202.1| GENE 6 5291 - 6643 1312 450 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00075 NR:ns ## KEGG: LCRIS_00075 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 12 450 15 453 453 813 99.0 0 MKFKFKFGEFFLGLATLIVIVLSIVLWIFIMTSDQRFSNIGQQNQNNITKEQTRSHNFKS LYDLYIPTTSYGFANGNLCQLYDSKNNLTLEFTKEIKKAKATNKIKKIVDTRTKYEEYLN NPNYVQLVYPDEITFSLFNQLNNAANDNREFNRFFISQSNHWIYLGNDQTNEIYQVKIAG ANFDKLRKYARNAKSKYPVRLVRLKEGYSPFYIKTMNAKVYSYLTNHQSYSYFVSRLLGT SGVTSKTNKNGQTVYSLNYYTRLRVPDSNSGEHNYLYTHYEKNKIPNTTNRLLDSVYYVH QLGLTEQDLRFFDADGANVSYLNYIEGIPVFLNKHDLQVKTTFSTDSINVAFNSVNFQIP IPFDGQTKRLKPTQDVVDELVNHGLKQEDIQRIIVGFAEEKDSSHHSLINLIPTYYIKAY DEWKSLGEWEKQDVSTYREADQLTVNEGGK >gi|227861391|gb|ACKR01000202.1| GENE 7 6646 - 7470 886 274 aa, chain + ## HITS:1 COG:BH4024 KEGG:ns NR:ns ## COG: BH4024 COG4853 # Protein_GI_number: 15616586 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 266 1 262 262 60 22.0 3e-09 MDHKRIEWLFFVVFFLIDIYLGIEILRSPVNLSNADTTTRSVASIRNEMKSDNIDLPDKI SDAPDSGYYLATKNRDYLSGKVSSLTNVNARYSKSDNVLYGEPRQAVLLSKKPKEALEQI EDFKNDSKNIPYGKEFKYEPDMSSEDNYVFVQNSDYGEIYANSAQLNINVKDNQIINFTE TYMGQASPVRELQSTISAWRAVRAMYTDRELTNNSRVTQVKLGYSKLTEVRGSTILLPTW LVWVENKTTKNITMKRINAYTAQMLQSSTYNVEK >gi|227861391|gb|ACKR01000202.1| GENE 8 7483 - 8280 781 265 aa, chain + ## HITS:1 COG:L582 KEGG:ns NR:ns ## COG: L582 COG1235 # Protein_GI_number: 15672377 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Lactococcus lactis # 2 265 8 270 270 243 49.0 2e-64 MKVSVLASGSTGNTSLIVTGQHKILMDAGISGKKTKDLLAEVGVDINEIDMAFLSHDHTD HSGGLGVLMRRYPKIDAFANSGTWQYLLDTKKIGKLPAEQMNTIEPGQTKTFGDVDITAF ATSHDAAEPQYYVFTSGGKRVAFLTDTGYVSEEVEGTIEDADAYMMEFNYDNMMLRDGPY SWALKQRILSDVGHLSNDEAAQALVDVVTPKTKHIFLAHRSQHNNTEYLAHETAKEMLLE GDANLDDDVKIIDTEPNQPTKLVEI >gi|227861391|gb|ACKR01000202.1| GENE 9 8360 - 9622 1608 420 aa, chain + ## HITS:1 COG:SP2239 KEGG:ns NR:ns ## COG: SP2239 COG0265 # Protein_GI_number: 15902042 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Streptococcus pneumoniae TIGR4 # 70 417 50 384 393 237 46.0 3e-62 MVENQNNNNNLQQPRKKNTNGKIIATAAIVGVVGGLIGGGVSYYAADQMNNASVNNGAAQ TSVSSSSSKVSEKSAKTSGTMTTAYNDVKGAVVSVINLKRQSSSNSTNSLYNSLFGNDDS DDSYSSSSKGKLETYSEGSGVVYMKSNGKGYIVTNNHVISGSDAVQVMLANGKTVNAKVV GKDSTTDLAVLSIDAKYVTKTAEFGDSKSLQAGQTVIAVGSPLGSEYASTVTQGIISAPA RTISTSSGNQQTVIQTDAAINPGNSGGALVNSAGQVIGINSMKLAQSSDGTSVEGMGFAI PSNEVVTIVNELVKKGKITRPQLGVRVIALQGIPEGYRSRLKINSTLKSGIYIASVNKNS SAANAGMKSGDVITKVDGKKIDDVASLHSILYSHKVGDTVNVTVNRNGKDVNLKVKLEGN >gi|227861391|gb|ACKR01000202.1| GENE 10 10140 - 10619 343 159 aa, chain + ## HITS:1 COG:lin0321 KEGG:ns NR:ns ## COG: lin0321 COG1576 # Protein_GI_number: 16799398 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 159 1 159 159 192 66.0 2e-49 MNIKIVCVGKLKEKYFRDAIAEYEKRLSRFAKVSIVQVPDEKAPEKFSAAEDEKVKEIEG QRILSKIKDKEYVYVTAIKGKQRSSEEFAKEIQDLATYGHSDITFVIGGSLGTSDAVNKR GNDLISFGKLTMPHQLMRVVLIEQIYRAFMINSGSPYHK Prediction of potential genes in microbial genomes Time: Wed May 25 06:52:39 2011 Seq name: gi|227861384|gb|ACKR01000203.1| Lactobacillus crispatus JV-V01 contig00219, whole genome shotgun sequence Length of sequence - 5480 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 3, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 27 - 287 90 ## LCRIS_00080 peptidase + Term 439 - 474 3.1 + Prom 400 - 459 6.7 2 2 Op 1 . + CDS 546 - 1673 1169 ## lhv_1466 hypothetical protein 3 2 Op 2 . + CDS 1682 - 2416 771 ## COG4990 Uncharacterized protein conserved in bacteria + Term 2598 - 2633 -0.0 4 3 Op 1 . - CDS 2440 - 3321 648 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 5 3 Op 2 . - CDS 3329 - 3982 537 ## LCRIS_00082 ABC transporter, permease protein 6 3 Op 3 . - CDS 3987 - 5339 1127 ## COG1122 ABC-type cobalt transport system, ATPase component - Prom 5397 - 5456 4.0 Predicted protein(s) >gi|227861384|gb|ACKR01000203.1| GENE 1 27 - 287 90 86 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00080 NR:ns ## KEGG: LCRIS_00080 # Name: not_defined # Def: peptidase # Organism: L.crispatus # Pathway: not_defined # 24 82 1 59 181 109 96.0 3e-23 MEGGRLNTAVLRGGFFYDENGKSLGEKYYAYRAVTVNQSPITINGAKFYKLADRDAYIKV TNISGQGRVLKRNAYIYSTSKKTHYA >gi|227861384|gb|ACKR01000203.1| GENE 2 546 - 1673 1169 375 aa, chain + ## HITS:1 COG:no KEGG:lhv_1466 NR:ns ## KEGG: lhv_1466 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 100 354 1 256 265 424 82.0 1e-117 MRKRWTAAVIAALVAVSTAATTVKADDTNTTANTNETQVTATSDQTNSDSDKVTYNKADY LSANPKLVRIKHATTAYKDAALTKSAQSVKAGSHFLISRIVKSDNQVPILKTSDGLYLPA KKSLVTKVIAYQNPKGYHQVHYTQVKPYGKVGYNLYRGYEGIKTWKVMHRVGTWAGTNYY NQATYNAVKNFQRSHHLPATGNVNLATWEKMGFSKKSWYSIDSYVAPLKAYAWQGRKAHI EAMINQAYKYMGKPWLAGCSTSPSYGVDCSGLVMQGLYAGGISPVPTSSIGHAHPGNEWN SRNLWADKHLKRVPYSQRQCGDLVFYYQPGTHTIWHVAIYLGNNRVIESWPPRVMVQPIV NSQRNVIAGIKRPFI >gi|227861384|gb|ACKR01000203.1| GENE 3 1682 - 2416 771 244 aa, chain + ## HITS:1 COG:lin0018_2 KEGG:ns NR:ns ## COG: lin0018_2 COG4990 # Protein_GI_number: 16799097 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 80 244 2 164 164 131 46.0 1e-30 MKKYLAILLVSLGFSSLLLTRQTVHAADNDDAATTNQSAPKYTGLKKVGKHYVYFDQAGK QRFKNTKTKKAYYWINKSGKIVGINNYAKVISQLPEMPTGCEITAVTMMINFAGKKVTKQ QAAKIMPRSSNPNKGFIGSPYKKYPLGYWVAPNGVKPVVKHYLGRAQNMINCGLPAIKDK LINSHLVVVWVGMFDGLSNHAITLTGYHGKTIYYNDPWTGTKRKIKQEIFATHWALDAHR ALSY >gi|227861384|gb|ACKR01000203.1| GENE 4 2440 - 3321 648 293 aa, chain - ## HITS:1 COG:mll0601 KEGG:ns NR:ns ## COG: mll0601 COG0596 # Protein_GI_number: 13470803 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Mesorhizobium loti # 5 293 9 300 301 195 37.0 9e-50 MEVIEGKMPFMGYETYYRIVGRRSEKTPLVLLHGGPGSSHNYFEVLDKLAEIDNRRIIMY DQLGCGKSSIPDDHPELYTKETWVKELMALREHLALRKIHLLGQSWGGMLALIYMCDYHP VGIQSLILSSTLSSASLWSKELHRMIKYLPIEEQAAIHRAELTSNFNDPDYLKANEHFMN QHAIDMTKTWPECVMRKKCGGIVAYETAWGPNEYTPEGNLHDYEYTEKLGKIKIPTLITS GTDDLCTPYVAKTMQDQLAGSKWQLFENCGHMSFVEKTDEYVEMLRKWLDQHD >gi|227861384|gb|ACKR01000203.1| GENE 5 3329 - 3982 537 217 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00082 NR:ns ## KEGG: LCRIS_00082 # Name: cbiQ1 # Def: ABC transporter, permease protein # Organism: L.crispatus # Pathway: ABC transporters [PATH:lcr02010] # 1 217 1 217 217 334 99.0 2e-90 MNPSLKFLLAFIISLEISLKASLVTNLLVITFALVYLIITRIKIKELILLIILPFIAAFT IFATLFWFSPTPNAYYAWNLSTRIYVYTLTIACVTRNNTATDFARSLEQNLHLPSKFAYG VLAAINIIPQMKMAVKQIRTSAMMRGIYLSFWSPVLYFKAILVALNSADNLAQGMESHGY VEGQRRSTIIAIPLTARDWVIFFTLLILVNISLFLFK >gi|227861384|gb|ACKR01000203.1| GENE 6 3987 - 5339 1127 450 aa, chain - ## HITS:1 COG:SP0720 KEGG:ns NR:ns ## COG: SP0720 COG1122 # Protein_GI_number: 15900617 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 67 449 73 441 461 189 31.0 1e-47 MKVTVNNLTFSYEKEPIINHLNIEIPHGFSLLIGPTGCGKSTLLKIIAGLYPKYAGRLTG MVDLHGQKAAMMFQNAAEQFTMPTPREEIVFALENLQLDEGEYQTRLDQATAFTQIADLL DQKINTLSGGQQQRVALAVLIAMDVDLLLLDEPFASCDPKTRAFLIKKLAILAHNGKTII LSDHVLDDYEPVCDHLFEFTNNQEVIELNASKKIALFEQNKKLHERHYHFVLPNSEPIFT LKQVQIRQNKLLLKQNELNLHSGTTLITGANGVGKTSLFKVMTKMIPYTGNFAYLNKEIA QISARKYLTQVAQIFQKASDQFLAVTVKDELELSKKDRNLFFTEEKVNEWLDKLGLAKHL DQVVYSLSGGQQKKLQILLMLMTKHQVLLIDEPLSGLDHNSVKLVLELMRESQQKLHQTF FIISHQIDELAEFCDYHLIFADQRLKYVER Prediction of potential genes in microbial genomes Time: Wed May 25 06:52:52 2011 Seq name: gi|227861375|gb|ACKR01000204.1| Lactobacillus crispatus JV-V01 contig00220, whole genome shotgun sequence Length of sequence - 6426 bp Number of predicted genes - 8, with homology - 7 Number of transcription units - 4, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 13 - 954 788 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 960 - 996 2.5 - Term 948 - 984 2.5 2 2 Op 1 3/0.000 - CDS 989 - 1885 913 ## COG0501 Zn-dependent protease with chaperone function 3 2 Op 2 . - CDS 1904 - 2464 643 ## COG1704 Uncharacterized conserved protein - Prom 2486 - 2545 9.8 4 3 Tu 1 . - CDS 2561 - 3667 994 ## COG0471 Di- and tricarboxylate transporters - Prom 3708 - 3767 7.3 + Prom 3770 - 3829 10.0 5 4 Op 1 . + CDS 3868 - 4272 474 ## LCRIS_00088 hypothetical protein + Term 4292 - 4327 4.1 + Prom 4274 - 4333 3.6 6 4 Op 2 . + CDS 4366 - 5637 609 ## COG4781 Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase 7 4 Op 3 . + CDS 5713 - 6144 436 ## COG0584 Glycerophosphoryl diester phosphodiesterase 8 4 Op 4 . + CDS 6216 - 6356 57 ## Predicted protein(s) >gi|227861375|gb|ACKR01000204.1| GENE 1 13 - 954 788 313 aa, chain + ## HITS:1 COG:STM2036_2 KEGG:ns NR:ns ## COG: STM2036_2 COG2207 # Protein_GI_number: 16765366 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Salmonella typhimurium LT2 # 211 304 1 95 104 70 40.0 3e-12 MAAVALDQYLASVLKSNSTDKNEIKLEAGNPDFDLFTIYLENHNTGIHRYRMDVSTILYI AKGTVTIKSGEKIIQMKSGNVLLLTEGCKYEILSQKPDTVLIKLKFKRGFLYRKYFKDFS CKGEREVKVIEQIVDSLENEHVLWLKNNQITRASQVMQHIIGGYLNNDLFTKALIQAELT TMLIISIRTQRMATPTSLDKTKFEKKTLDNYIDLHFADVSLSDAAKYFGFNPNYFSNMVK AKTGKSFVDHVDDRRMQEARELLAQPDISLREIIGRVGYSSKSFFYKKFNQYYHITPAAM RAELFRQANINLK >gi|227861375|gb|ACKR01000204.1| GENE 2 989 - 1885 913 298 aa, chain - ## HITS:1 COG:SPy0331 KEGG:ns NR:ns ## COG: SPy0331 COG0501 # Protein_GI_number: 15674492 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Streptococcus pyogenes M1 GAS # 1 298 1 298 298 283 50.0 2e-76 MLYQQIARNKRKTALIMFIFLVILGLVGAGIGYLWSNSPTMGVTIALIGSLVYLFIMWQN PANMIMSLNHAQEIHEADNPELWHIVEDMAMVAQVPMPRVYIIPDPSPNAFATGRDPEHS AVAVTQGILELLDREELEGVLGHELSHVKNYDILLSTIAVVLVGVISFISNMASNFWFWG GVRSDDDDDRDSNALAMIFKVVALVFVLILGPLSASLAQMALSRNREYLADASSVKLTRN PQGLISALHKIENSQPMKVADSSSAGLYIENPFHNHGLTHLFDTHPPTADRIKRLENM >gi|227861375|gb|ACKR01000204.1| GENE 3 1904 - 2464 643 186 aa, chain - ## HITS:1 COG:SP1284 KEGG:ns NR:ns ## COG: SP1284 COG1704 # Protein_GI_number: 15901144 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 4 186 1 181 186 212 60.0 3e-55 MSPLIWIILAIIVLIVAIYIVTYNGLQRAKVYAEEAWSQIDVQLKRRNDLIPNLVETTKG YAKHEKSTFEEVVKLRNQLVNVPQVNHEEAMKLSNQITDSLKSIFALAEAYPDLKANQNF LKLQEELTNTENKIAYSRQLYNSTVATYDQKLLTFPSNIVAKWHHFTKINYLETPSEEKN VPQVKF >gi|227861375|gb|ACKR01000204.1| GENE 4 2561 - 3667 994 368 aa, chain - ## HITS:1 COG:L20481 KEGG:ns NR:ns ## COG: L20481 COG0471 # Protein_GI_number: 15673760 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Lactococcus lactis # 35 364 49 388 392 119 28.0 8e-27 MTVLKNIAKDRILQITVIITVVSLFFAKPRFADINFHTLWSVAAMLTIIQIYAYLHVLDV LAYKLTSIADNTRKLNTLFSLLAVISGMFLGNDITALTLIPLYLNIAKRYKLPQILPVTL IGMGANIGAAFMPWGNPHNIFLVSRFDVSPLKFFEWSVPYLVVSMLIMGLVFLFIPKEEI PVQKAEPIKISWRPTLITTAVFIFFFFGVFRTIDIIWPMLASIALALAINPRIMLKIDYA LLLTFTGFFIFISDIQQIPVIVNLIHGTVYSEISTYFASIISSQVMSNVPSTILVGKFTT YAQALFLGSNIGGFGSAIGSMANMLVLKTFNQHGSVSKKKFFIQWTIMQFAGLIILTAVG LLLLIFRI >gi|227861375|gb|ACKR01000204.1| GENE 5 3868 - 4272 474 134 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00088 NR:ns ## KEGG: LCRIS_00088 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 134 1 134 134 245 98.0 3e-64 MTENAISINIKPDAAEMIKSKMDADHQIVILALDDGSTKYSKKGGTCTIGDSFQFVILAE KDPKYNILIENNAGLDLYTAQPETTFFEPGLVVNARNSTLSLSSDSGIIDGGMTVTQYEP EAITADDLKNGGQC >gi|227861375|gb|ACKR01000204.1| GENE 6 4366 - 5637 609 423 aa, chain + ## HITS:1 COG:L58914_1 KEGG:ns NR:ns ## COG: L58914_1 COG4781 # Protein_GI_number: 15673979 # Func_class: C Energy production and conversion # Function: Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 12 318 40 354 368 104 26.0 3e-22 MTFVQEIKAGSREFCQNWLRYLLLFMGLSLFNQFIVIPLFRYITTFVLQASAIPFVSYQN VVTIITTHTVAFLILIIELLLLLVILYAQLAYLLHGVWDIKHQVFTWKNSFIQTWQNIKK IRLGTLFILMLYFLLVVPLADVIFRTPLLSKVQISEFILDYLTRTPILLAVLIAFYLAAL ILGARLVFALPIIVFDHLKSVQAVKRSWRLTAHYRWRTICWRIIVLAVLSAAVMTIFYLA MYCLQLLVDLLPGKCPLILAIINLSLVQIISEVALVYVSVLGLSIILKALRQEKISQTGK TKKIILSTLVVFVLVMINAISTNYLYLTSVNAKAPVIISHRGVDDKNGVQNTLQSLRKTA KEKPNYVEIDVHETKDKKFIVIHDENLLKLTGVNKAPNDLTLRQLEKLTAKEDGYHAKLV SFD >gi|227861375|gb|ACKR01000204.1| GENE 7 5713 - 6144 436 143 aa, chain + ## HITS:1 COG:L58914_2 KEGG:ns NR:ns ## COG: L58914_2 COG0584 # Protein_GI_number: 15673979 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 1 136 113 248 249 112 40.0 2e-25 MLQRFNQKYGKTILKNAYQVQSLDYRVVEGLHLINPRLVVFYIQPYNFTYPQSVASGYSM EYSTLNSDFIWQAHLQDRPVYAWTVNDEKLMKKMMYQQVDGLITDRVDLAKKAIKSFQKD ASYATRILNYIVVLHLSKNFESA >gi|227861375|gb|ACKR01000204.1| GENE 8 6216 - 6356 57 46 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRKGENYNTGCEPNQRPKNKRNAKKRVAHVAAVVAFLNKAAKDENK Prediction of potential genes in microbial genomes Time: Wed May 25 06:53:02 2011 Seq name: gi|227861363|gb|ACKR01000205.1| Lactobacillus crispatus JV-V01 contig00221, whole genome shotgun sequence Length of sequence - 10168 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 6, operones - 4 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 1193 851 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 2 1 Op 2 . + CDS 1217 - 2305 697 ## LCRIS_00093 endoglucanase + Term 2306 - 2332 -1.0 + Prom 2312 - 2371 5.6 3 2 Op 1 . + CDS 2391 - 3035 846 ## COG1896 Predicted hydrolases of HD superfamily 4 2 Op 2 . + CDS 3069 - 3950 707 ## LBA0109 hypothetical protein + Term 3963 - 4029 7.1 - Term 4041 - 4094 10.2 5 3 Op 1 . - CDS 4102 - 5034 905 ## LBA0110 hypothetical protein - Prom 5057 - 5116 5.6 - Term 5068 - 5107 1.1 6 3 Op 2 16/0.000 - CDS 5118 - 5873 251 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 7 3 Op 3 . - CDS 5873 - 7453 1789 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 7479 - 7538 6.9 8 4 Tu 1 . - CDS 7819 - 8451 606 ## COG2094 3-methyladenine DNA glycosylase + Prom 8383 - 8442 4.8 9 5 Tu 1 . + CDS 8484 - 8849 481 ## COG3189 Uncharacterized conserved protein - Term 8781 - 8816 3.5 10 6 Op 1 . - CDS 8846 - 9634 719 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance 11 6 Op 2 . - CDS 9621 - 10139 435 ## COG0350 Methylated DNA-protein cysteine methyltransferase Predicted protein(s) >gi|227861363|gb|ACKR01000205.1| GENE 1 3 - 1193 851 396 aa, chain + ## HITS:1 COG:lin0533 KEGG:ns NR:ns ## COG: lin0533 COG1215 # Protein_GI_number: 16799608 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Listeria innocua # 13 394 49 416 416 211 32.0 2e-54 KFLVKITPLKRYPKVTLVVPAHNEELVISKTTQAILNLNYPADKLQILIYADDTAKIARE IIKQYPERKINVQVIERTGSGGKAGVLNDALKIAQGEYLGVYDADAMPEENALYFLIKKI LENPVRYKAAFGRNKTRNARQNFLTKCINQEIVVTQRIQHCGIWQLFKIGRIPGTNFIIN TDYVRSIGGWRNGALTEDTDISFKIMGSGSLIALAYNSEAFQQEPERLKDYYFQHLRWAK GNYEVVINNFCHLFDKSNWRVKLETVYYSCTFFWFNLAIVLSDLIFFSNLIALIVHLWNP AVVIPFTISRSNILLAQILLFNWLLMVLLYILQINLAMTTQYGQATDEQIWLALASYFTY SQLFIIVSIHAVTSVMLDRVFHRDSTKWVKTKRFAD >gi|227861363|gb|ACKR01000205.1| GENE 2 1217 - 2305 697 362 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00093 NR:ns ## KEGG: LCRIS_00093 # Name: not_defined # Def: endoglucanase # Organism: L.crispatus # Pathway: not_defined # 5 360 10 365 367 595 82.0 1e-168 MLLGFLLVTIAFTGIMIYIRADNNSAVRNFFLHSWHKNYVVEEKNLAYINTTPKQEQVTV LSEGQGYGMFIAAHDPAVKESNFAKLVQYYLKHRDRNTQLMAWRQTKKNGKWSSERNSAT DGDLFIAKALFLAAKRWKNPAYQRQGQKLIADILRYEYNPTTHALTVGNWADSKPKYYNL MRTSDVLPTMFDQFYRESNDSRWLLIKKTMLKRLNQLSHQHKSGLVPDFAWLTSKDAKPV KGRVTTDRYDGDYYANACRVPMDLAFSKDKLAKNTVHRLLKFFSKQNTITAGYTLKGKPV NNYQSASFSAPIYIAVNENRNQGYDNLFASQQYIFAKKLPKNNYYDAALTTMATILTPAH RF >gi|227861363|gb|ACKR01000205.1| GENE 3 2391 - 3035 846 214 aa, chain + ## HITS:1 COG:lin2634 KEGG:ns NR:ns ## COG: lin2634 COG1896 # Protein_GI_number: 16801696 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Listeria innocua # 1 191 1 190 215 218 54.0 5e-57 MGLNAYIQGFNSLESIDRAPGYFKYHHHSVADHCFRTAELAQMMGDIEEVKGKKKINWKA LYEKSLNHDYTERFIGDIKTPVKYATPQLRKMIGDVEETMTTKFIKDEIPEEFQEIYTKR LSEGKDDTLEGKILSICDKLDLLYEAYGEIELGNPNPVYMQMFKESLETIKKFDDLVCVQ YFIKKILPDLFKGDFAGKDKMQRIAFSILLLGDD >gi|227861363|gb|ACKR01000205.1| GENE 4 3069 - 3950 707 293 aa, chain + ## HITS:1 COG:no KEGG:LBA0109 NR:ns ## KEGG: LBA0109 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 293 12 305 305 508 92.0 1e-143 MDSLHFKQEGLMNPKLTSICDICITRNLNPEDYANDAVATFAQSLLYTFVGAKKQDQSGF IVKNKKDRKKYEAFLQDYDGNEIARQQIKRSDLNLAVIKSEDGKLNYVPNQGVTFEQNLK GMGLEINFQLNEVDFIDRERVRAKYKYRCQYCGRRGHSVDHKDPVSLSHNNSLDNLTLAC AECNRIKSDMPYKLFIQLNDQISEINKKLVKYEDALGTLREEFEHRRRYLAAQVHLKGVI NDPELNAIRKQNKSLQDAIDSLQSDYDDLRQTRKTYFDTGWKLARIKENKDII >gi|227861363|gb|ACKR01000205.1| GENE 5 4102 - 5034 905 310 aa, chain - ## HITS:1 COG:no KEGG:LBA0110 NR:ns ## KEGG: LBA0110 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 310 1 309 309 476 80.0 1e-133 MNDRVYYFIKPYDESLPLPPAESFAQILNEAYLHPFNWKARTTRKSFWWSTLINLVIGIL CILLGFYAFNQNINPGIRIVDGIVAAVVYLWLFLAALGQTIRRLHDVGYSGYWYWAAFTG YGAMFLFYLELQPSVQRQVKWGKYLFSDQDYPKGGAKSNVPVPTIGQILKEHFFDCFKWD ARSTRTSFWVGTAISQVIMTIGVLACYLLAFMLLAPFSVTEFDSGDAKVIGVIFIIFIIF FIAAAIWAFLAQLGHTVRRLHDAGFNGGWWWLGVIPYVGQLLLAFLLFHPTVQNEVKWDK YLFDPEDRIR >gi|227861363|gb|ACKR01000205.1| GENE 6 5118 - 5873 251 251 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 237 1 237 318 101 29 3e-21 MTESNEVILSLKHMQKSYGNHQVLKDISFDINKGEIVTIIGPSGGGKSTTLRCINLLEEP TGGEIDFHGKNILHPGYNRNAFRSKVGMVFQQFDLFENKNVLENCMVGQELVLKRSKDEA RKIAMKNLEKVGMDPFIKAKPQQLSGGQQQRVAIARAISMNPEVLLFDEPTSALDPEMVG EVLDVMQKLATTGLTMVIVTHEMGFAKSISDRVLFISDGIITEQGSPEELFDHPKNEKTQ KFLSNFRNNEF >gi|227861363|gb|ACKR01000205.1| GENE 7 5873 - 7453 1789 526 aa, chain - ## HITS:1 COG:SP0453_1 KEGG:ns NR:ns ## COG: SP0453_1 COG0834 # Protein_GI_number: 15900370 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Streptococcus pneumoniae TIGR4 # 3 323 4 325 325 258 46.0 3e-68 MSVLLSLFIGFSLSSNQTQAAKKDSGTLKIGMEANYPPYNWTQPTKANGAVPIDGSNSYA NGYDVQIAKIIGKRLHKKVIVEKTQWDGLLPALTSGKIDLIIAGMSPTAERRKAINFSEP YRKSTFVVITNKASKYSNAKKLTDFKGAKLTAQQGTLHYDLIKQLKGAKREPAMRDFSAM RQSLASGTIDGYVAEDIEFESYHNVNPNIIAVNLNKMAGFKVDHDDSVTSIGVKKGNTKL LNEVNATLRTISNKKRDQLMSQAIKEQPKAGNETKKENWLVTTWKQYGGMIMSGIGMTLL LALVGTIVGFFIGLLVGIIRTIPTPTTRGKRWTLNVVKWLLSVYVEIFRGTPMMVQAAVI YYGIAQFWHLNLNRTVAALIIVSINTGAYLAEVIRGGIISTPEGQFEAASALGMTHNQRM WHIILPQAIRNCLPSITNEFIVNIKDTSVLSIISVSELFFVGTTIASQSFKFFPTYLMIS AIYLILTFTITRIFNFIEKRLEGNKNYNLMANQVQVGTPKDAEANN >gi|227861363|gb|ACKR01000205.1| GENE 8 7819 - 8451 606 210 aa, chain - ## HITS:1 COG:SA2134 KEGG:ns NR:ns ## COG: SA2134 COG2094 # Protein_GI_number: 15927924 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase # Organism: Staphylococcus aureus N315 # 7 202 3 193 202 150 43.0 2e-36 MNYSTYFSTNTTDYIAKDLIGRMLTFDNGQEKLGGYIVEAEAYMGKKDRAAHSYGGRRSP ANEGLYGKGGTIYIYAQRQYFFFDVATRVQNEPQGVLIRAIDPTLGIETMIKNRHGKDGV LLTNGPAKMMQAFGIHDKNWNLHFLSDSPFAIDLDDRHKKIPQEIIAAARVGINQSDPVW ANKKLRFYVAGNPYVSDMKKRNYETNNGWA >gi|227861363|gb|ACKR01000205.1| GENE 9 8484 - 8849 481 121 aa, chain + ## HITS:1 COG:BMEII0787 KEGG:ns NR:ns ## COG: BMEII0787 COG3189 # Protein_GI_number: 17989132 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Brucella melitensis # 1 115 1 113 116 99 46.0 2e-21 MTEIKLVRIYDHEQPAGYRILVDRLWPRGMSKVKADLAEWDKQIGPSKELRQWFNHEDEK FPKFKQKYIEELNHNDYTAEFLQDVKKHLAKEDVLFLFGAKNKEHNQAVVLKEYVLNTLN S >gi|227861363|gb|ACKR01000205.1| GENE 10 8846 - 9634 719 262 aa, chain - ## HITS:1 COG:BS_yceF KEGG:ns NR:ns ## COG: BS_yceF COG0861 # Protein_GI_number: 16077361 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Bacillus subtilis # 3 257 7 246 257 182 46.0 8e-46 MSILKLYAPFFDGNNWLHVLTSGKDWMIILTLILMECLLSVDNAVVLAAQTQVLPNKAEQ RKSLVYGLWGAYLFRFIVIGIGTYLINFWEIKLAGSIYLFYLAFKFFYDQRHPKQAAEHE KEKEEREAARHKGKKKKRHVLSLFWRTVISIESMDIVFSIDSVLAALAVSDNPVVVLIGG MIGILCMRGVAEIIIKLMDIIPELQPMAYLLIGIIALKLLLALPPLRFELPNTVFAIIVF AILILTILFHFWKVKKHGHKHI >gi|227861363|gb|ACKR01000205.1| GENE 11 9621 - 10139 435 172 aa, chain - ## HITS:1 COG:BS_adaB KEGG:ns NR:ns ## COG: BS_adaB COG0350 # Protein_GI_number: 16077250 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Bacillus subtilis # 5 166 8 170 179 108 33.0 7e-24 MTEFFYYDYVTIEPWTYFLTASEAGLTYVGLKGDETVSPIFSFYPHRMLVRDPKKMAPHI KQLKEYFAGIRKNFDVPIDISEFGTEFQRKVLAVVQHIPYGVTLTYGDVANSLAEATSSR SVAHAVALNPVLIFIPDQRVILSNNKVGTYRLGQKEKIRLIKLEKKQLHVNS Prediction of potential genes in microbial genomes Time: Wed May 25 06:53:16 2011 Seq name: gi|227861361|gb|ACKR01000206.1| Lactobacillus crispatus JV-V01 contig00222, whole genome shotgun sequence Length of sequence - 943 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 32 - 901 416 ## lhv_1982 transposase Predicted protein(s) >gi|227861361|gb|ACKR01000206.1| GENE 1 32 - 901 416 289 aa, chain + ## HITS:1 COG:no KEGG:lhv_1982 NR:ns ## KEGG: lhv_1982 # Name: not_defined # Def: transposase # Organism: L.helveticus # Pathway: not_defined # 1 280 24 303 306 398 67.0 1e-109 MIGENKVCDQRTIAGKRRMLARTKGTDVMVNLIDQAMKAGHQAKYVLFDSWFSNPHQIVQ LKQRKLDVIAMVKVSSKIKYEFEGERKNIKQIYRSCKKRRGRSRYMLSIPVKVGRQDKDG AKIDARIICVRNRANRKEWLAIICTDMSLSEDEVIRNYGKRWDIEVFFKTCKSYLKLSTE YHGLSYDALTAHVAIVFTRYMLMSVAKRDDEDERTLGELFYCMIDELADITFSHSLQLIT KAMVASVEKVFHASEAQIAEFTADFINRLPKYMQKLLKKTSKNSIEAQS Prediction of potential genes in microbial genomes Time: Wed May 25 06:53:21 2011 Seq name: gi|227861358|gb|ACKR01000207.1| Lactobacillus crispatus JV-V01 contig00223, whole genome shotgun sequence Length of sequence - 1689 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 830 571 ## COG2801 Transposase and inactivated derivatives 2 1 Op 2 . - CDS 911 - 1618 367 ## LGAS_1507 transposase Predicted protein(s) >gi|227861358|gb|ACKR01000207.1| GENE 1 2 - 830 571 276 aa, chain - ## HITS:1 COG:yi5B KEGG:ns NR:ns ## COG: yi5B COG2801 # Protein_GI_number: 16131429 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 1 252 16 257 283 135 37.0 6e-32 MCKQANIARSAYYKWLNHKPSKRELRDQKILKRIKEIAESNNSLFGSPKMTLALNNELAD GEAKIYRRTVARLMCVNGIYTSKARFNKRYRYQAARPEETAENLLHRDFNATKPNEKWCT DITEEKIPGTSQKIYLCTIFDLYDRFPVGYALSKRNDTALVNAALSTAWKREPNSHAMLH SDRGFQFTRMPFKHELEEHGMPQSMSRIGRCIDNGPMEGWQGLIKEMREVLYPKANSYEE MEKAFKASIEYYINYDPQERFNGKSAGQVRKEAKNN >gi|227861358|gb|ACKR01000207.1| GENE 2 911 - 1618 367 235 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1507 NR:ns ## KEGG: LGAS_1507 # Name: not_defined # Def: transposase # Organism: L.gasseri # Pathway: not_defined # 1 235 8 242 242 316 77.0 4e-85 MSRKSKFSYEAKLKAVKQYISGEASPASIAKVLGAGKTTLRQWVYAFKDHGPEALRPHKY NQRYSKDFKLKCIAAYLNGEGSYDYLTNKFGLRSAAQLKQWVIKYNSHQELKDYNPILEA YMTKRKKTTLEERKQIVKYCKDHQWNYKEAALKFGCSYAQVYNWSKKYSAKGTDGLADRR GHRLKEAELSETQRLKREIEQLKKENDIKDQEIAFLKKVKELERMCLLDSQNKDK Prediction of potential genes in microbial genomes Time: Wed May 25 06:53:30 2011 Seq name: gi|227861341|gb|ACKR01000208.1| Lactobacillus crispatus JV-V01 contig00224, whole genome shotgun sequence Length of sequence - 15982 bp Number of predicted genes - 16, with homology - 15 Number of transcription units - 10, operones - 5 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 30 - 410 545 ## LCRIS_00977 hypothetical protein + Term 416 - 462 6.2 - Term 673 - 703 2.0 2 2 Op 1 . - CDS 710 - 1036 339 ## LCRIS_00978 transporter protein 3 2 Op 2 . - CDS 1084 - 2022 736 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain - Prom 2054 - 2113 8.9 + Prom 2024 - 2083 8.3 4 3 Tu 1 . + CDS 2186 - 3532 1151 ## LCRIS_00980 membrane protein + Term 3553 - 3589 4.1 - Term 3541 - 3575 2.1 5 4 Op 1 . - CDS 3596 - 3835 164 ## gi|227879052|ref|ZP_03996942.1| hypothetical protein HMPREF0506_1943 6 4 Op 2 . - CDS 3871 - 5361 1150 ## LGAS_1655 hypothetical protein - Prom 5446 - 5505 2.2 7 4 Op 3 . - CDS 5565 - 6173 472 ## LGAS_1655 hypothetical protein - Prom 6346 - 6405 14.7 + Prom 6259 - 6318 12.2 8 5 Tu 1 . + CDS 6411 - 6599 82 ## 9 6 Tu 1 . - CDS 6643 - 7152 623 ## COG2606 Uncharacterized conserved protein - Prom 7197 - 7256 5.7 + Prom 7119 - 7178 8.6 10 7 Op 1 . + CDS 7213 - 8157 1611 ## PROTEIN SUPPORTED gi|227879056|ref|ZP_03996946.1| ribosomal protein L11 methyltransferase 11 7 Op 2 . + CDS 8213 - 8446 118 ## LCRIS_00983 uncharacterized conserved secreted or membrane protein + Prom 8458 - 8517 7.7 12 8 Op 1 7/0.000 + CDS 8590 - 10830 2248 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 13 8 Op 2 . + CDS 10830 - 11267 415 ## COG1490 D-Tyr-tRNAtyr deacylase + Term 11492 - 11529 7.0 + Prom 11476 - 11535 7.4 14 9 Op 1 13/0.000 + CDS 11563 - 12849 1467 ## COG0124 Histidyl-tRNA synthetase 15 9 Op 2 . + CDS 12855 - 14708 2216 ## COG0173 Aspartyl-tRNA synthetase + Term 14719 - 14784 13.1 - Term 14699 - 14772 14.1 16 10 Tu 1 . - CDS 14774 - 15958 1319 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase Predicted protein(s) >gi|227861341|gb|ACKR01000208.1| GENE 1 30 - 410 545 126 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00977 NR:ns ## KEGG: LCRIS_00977 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 126 1 126 126 236 100.0 2e-61 MKQDELKKINHEIGSYVAKVTKTIWVDDRTLQIATMMIDSYGDTVYVWVEEADDHCRVSD GGRILFKLDPNEEDKELYETAEDIALGSGYEFDEKHCEIFVDVDRKNVAQAAMKLAQLQV AISYLG >gi|227861341|gb|ACKR01000208.1| GENE 2 710 - 1036 339 108 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00978 NR:ns ## KEGG: LCRIS_00978 # Name: not_defined # Def: transporter protein # Organism: L.crispatus # Pathway: not_defined # 1 108 1 108 108 171 99.0 7e-42 MKKSKYDLWIGALNLINCVLFISSWFAILGADFTARIALIFYLFAWFGVILNAVAVVQSH NMNISLIGPILGVIGNALYGFTAALALPAVIVNIISAFFIFMQHSNKK >gi|227861341|gb|ACKR01000208.1| GENE 3 1084 - 2022 736 312 aa, chain - ## HITS:1 COG:L0037 KEGG:ns NR:ns ## COG: L0037 COG2390 # Protein_GI_number: 15673169 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Lactococcus lactis # 7 311 5 309 309 198 36.0 1e-50 MAQLTDEQLANIAHDFYLSQLNIADISQKYDLSRYLIAKALEDARNRGIVKIKISRGIKR NQVLEREFQKRFRLKEAFIVETTGNRDENSEAVVNFAAKQIETYLKQAKIAGISWGATMH GVINDFFEQDLEQLYFIQLLGQPINSNRRKNPLAQDAAEKLHSHSLSLPTPLYILNPKIM PALKHEPYFKVIENCYHHLDMLFTGLSTFQSFQANQFLKENYGPELFKDIPDCDVAGMIM GRPYNIKGEFFPDFEQHICGISMNDIMKTPIRFCVVRNRFKSEALLGALRSGIITHLVTN DAIAQRVLQNID >gi|227861341|gb|ACKR01000208.1| GENE 4 2186 - 3532 1151 448 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00980 NR:ns ## KEGG: LCRIS_00980 # Name: not_defined # Def: membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 448 1 448 448 849 100.0 0 MSEIDREHHLSEKHHMKILWEEFFKSDNNTMAQDATLVEKTSIVGRVGIMLLSCGTGAWR VRDSMDTVARTLGITCSTDIGLVSIEYTCFDVDNESYSQTLSLPATGVNMTKLNEMEKFV RQFEKGHGEWTIGQIHKRLREISQQKSAYSPLISGLSSGLACGGFIFLLGGGLPEVICAF LGAACGQYIRAIMGKHRLTLVAKIAVAVAIACSVYFMSFHVGEILFHINHDHAYGYIGAM LFVIPGFPFITSGLDMSKLDMRSGLERLTYAILIIVIATMAGWAVATILRLHPGSMPKLK IDPGTLTCLRLLASFCGVFGFSIMFNSRPQMAATAAVMGAMANTLRLSLVDYAQVAPALA AFIGALTAGLLASIVRKKVGFPRIAITVPSIVIMVPGLYMYRAVFNFGITNINIGAYWIV EALMIVVALPLGLLAARILTDKKWRHAD >gi|227861341|gb|ACKR01000208.1| GENE 5 3596 - 3835 164 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227879052|ref|ZP_03996942.1| ## NR: gi|227879052|ref|ZP_03996942.1| hypothetical protein HMPREF0506_1943 [Lactobacillus crispatus JV-V01] # 1 79 1 79 79 91 100.0 1e-17 MQRQKQHKDGIIPPHGTAINNIPNSTTKTRTTNNIVKSYNNISSKLPQTSQNNSNLSLIG LALATLGLLGFTITKRKHD >gi|227861341|gb|ACKR01000208.1| GENE 6 3871 - 5361 1150 496 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1655 NR:ns ## KEGG: LGAS_1655 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 133 354 714 920 1425 81 30.0 6e-14 MGQKSFNGSDDGKVYPEKNNISEEDINQLKLNDDSHLLQWGIYFNYGNQLNNPPLSLYNA IFKVAFSQDQTLIPSSIKVFEIPSGMSVDQNALRHGIKDFYDGADKSDENYYSIIATGNN EKTKFADFLRAHLVKNATGQATGFSVNQTGQKFNPNDPSYDYSTHAYFIQLDTVLSNKSG QPTSSTGMTSDTSKNTLAGQGLSADYKNKDDQSANTPIQFSRLEEALALFKNKHYKIEKV SGANATLKTDSSIGFGNFYNNENVDQHFIIYLVHETQIEKQTATVGEEVKGYYVNGPKSQ NFSGINNPDVAVPKNDETPTPNVVKEVIYSRSRVVDLVKDPQGTETNWSQWISNNQAFSA IPYNNTTIKDIIDGHYHLDKNGVIHIASSQNKLTATSNSITEISAIAPNSEFLASIASTT VNGQKTTTGNLATISIWVPYSYSASKPEPTPTPIPIPESETPTTPEQPKQPSEPNTPYES EPPKSMNTNRQRFTKK >gi|227861341|gb|ACKR01000208.1| GENE 7 5565 - 6173 472 202 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1655 NR:ns ## KEGG: LGAS_1655 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 1 178 9 180 1425 69 33.0 6e-11 MKHKNDLSFNAKFNGKQKFGFRKLSVGLAAVALSTTFFLSNSQLVHADTNTATNEEQTQQ DSQKSNQEQSNNTIQSTQADPSNQNNQSSTKNSPNQEKTKQQTVEITAFYTDEKGNNASE IKKDESASLMAGQDTINVDIKINQPKLDQNNSLTINLPDTGESKNYQINTGKTKIFSNNA GSQSYWDITAVDHNDNSQLVAV >gi|227861341|gb|ACKR01000208.1| GENE 8 6411 - 6599 82 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MISNHVILNLLLFFCFIYLAIANAVTTKAAIMATTKPTIPNNKFIFVIFFYVIVIFCMRY II >gi|227861341|gb|ACKR01000208.1| GENE 9 6643 - 7152 623 169 aa, chain - ## HITS:1 COG:L115671 KEGG:ns NR:ns ## COG: L115671 COG2606 # Protein_GI_number: 15672298 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 6 169 2 158 158 147 49.0 1e-35 MSKKKNKKNKLEKTLVEKILDQNKIKYRQAQFAVSEDKGGVAQMNTSILEDKERLVYKTL VCEGNKTGPLVGVVPVTEHLSMKKLAKVSGNKKCEMLPLKKLAKTTGYVHGANTPIGIYF KEKFPIYLDDSMQGNPEIGVSSGEVGRSVFLNPEDLAKFCHAPFVDLKE >gi|227861341|gb|ACKR01000208.1| GENE 10 7213 - 8157 1611 314 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879056|ref|ZP_03996946.1| ribosomal protein L11 methyltransferase [Lactobacillus crispatus JV-V01] # 1 314 1 314 314 625 100 1e-179 MKLLIIKIDTSHEVEDALSVFALDNLNALGIESRKRSDFEQAGWLHDSTVVEMDDIKDLP KDTYFYAYFDEEADKDALVKKFQDKLKELKSYGLDVGDAKITTSYIKDQDWNTAWQKYYH VIDFSRHLAIVPEWEDYKPAFKDQQLIKLDPGLAFGTGNHKTTQLAMMGLERAMVKPMNV VDVGTGSGILAIAASKLGATDVLATDISDESMTAAKQNAALNDINNIHTQKTSLLADVKG KFDIIVANILAEILLDLIPQMDSHLNDDGQVIFSGIDYLQLPKIEKALDENGFKVDLTMR QGRWMGLAITRKEK >gi|227861341|gb|ACKR01000208.1| GENE 11 8213 - 8446 118 77 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00983 NR:ns ## KEGG: LCRIS_00983 # Name: not_defined # Def: uncharacterized conserved secreted or membrane protein # Organism: L.crispatus # Pathway: not_defined # 1 77 1 77 120 120 100.0 2e-26 MKKLGNKIEAIPIVRKLNSHRWMSLVWWSILVMILPYIFSICRVPVVWREAILFFIINSI IAYHLGNLIIKLNLSKW >gi|227861341|gb|ACKR01000208.1| GENE 12 8590 - 10830 2248 746 aa, chain + ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 1 746 1 738 738 830 54.0 0 MSKYIEMTHDQVIDTCKKYMNDDQVAFVEKAYEFANKAHAGQKRASGQPYIIHPTQVAGT LATLGLDPDTVAAGFLHDTVEDTPVTNDELKEKFGEDVAFIVDGVTKLNKYEYKSHQEFL AENHRKMLIAMAQDLRVIMVKLADRLHNMHTLQHLRPDKQRRIASETMDIYAPLADRLGI GTIKWELEDMSFHYLNPEAYYRIVNLMDVKRSQREKYIADTIKTLKKTLNELGIKYEIYG RPKHIYSIYKKMVNKHKDFDEIYDLLAVRVIVKNVRDCYAVLGAVHTEWKPMPGRFKDYI AMPKVNGYQSLHTTIIGPGGRPLEIQIRTEQMHKVAEYGVAAHWAYKRGNFTGVEQSTSG EKLDMVREILELKDETKDAGEFMKSVKSDIFSDRVYVFTPKGEVYELPKGSVTLDFAYAI HTQVGSHAVGAKVNNKLVPLDYKLRNGDVIEIMTQTNAAPSRDWVDMVKTSRARNKIRRY FRSQDREDSIQHGEQLIADMLRDEDLSPKEFMARDRIEKLLEHFNYHTADELYAAVGFGD LSAQAVVNRLTVDLRREEENQKQKELEEKILNSGQQAVQEEQPKKNSNTTMKVKHKNGVM IQGVSDLMLHLAKCCNPVPGDKIIGYVTKGRGVTIHRTDCRNITKEAEEQGRLIDVEWEN VEENSVQSFNANIEVFGYNRSNLLSDVINKLNSLTKNINNISGKVNEDNVAHMYVTVAVR NADQLDEILSKLRDIPDVYETKRSDN >gi|227861341|gb|ACKR01000208.1| GENE 13 10830 - 11267 415 145 aa, chain + ## HITS:1 COG:BH1243 KEGG:ns NR:ns ## COG: BH1243 COG1490 # Protein_GI_number: 15613806 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Bacillus halodurans # 1 144 1 144 146 150 52.0 8e-37 MRVVIQRVNHAQVDIDGKTVGKIGKGFLLLVGIKNGDELPVIKKAADKIAKMRIFEDEEG KTNLSLKDVNGEILSVSQFTLMANTKKGNRPSFVDAMRPPRSKELWEDFNQELENDGFHV ETGEFGADMQVSLENDGPFTIVLDL >gi|227861341|gb|ACKR01000208.1| GENE 14 11563 - 12849 1467 428 aa, chain + ## HITS:1 COG:SP2121 KEGG:ns NR:ns ## COG: SP2121 COG0124 # Protein_GI_number: 15901936 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 426 1 424 429 452 53.0 1e-127 MRVQKPKGTVDILPDQSGSWQKVEETARNFFNRANYREIRTPSFENYEIFARSSGDSSEI VEKQMYDFDDKGGRHIALRPEGTASVVRAYVEDKMYAPEVVKPFNVFYMESTFRYERPQA GRQREFHQIGVESFGSSNPLSDVQTIMMGHDLLGELGVKNYQLHINTLGNEQVRQDYHDA LVNYFTPLKDELSEDSQRRLRDNPLRILDSKDERDKKFLPKAPKIREFLDDDSKANFEAI LKMLDQLGIDYVIDDDLVRGLDYYTGIIFEFMVEDKSLWESATTILGGGRYDHLVEEFNG PATPAVGFGIGEERLMLVLKKQNPALFEKRGIDFFITNIGDGTAQKAIEIARSLRNQGFE ADFDVNQKKLKNQFKKADREGAKYVITLGEKELANGVLNIKRLADGKTIDLSLEDLNNMT KIMDELKD >gi|227861341|gb|ACKR01000208.1| GENE 15 12855 - 14708 2216 617 aa, chain + ## HITS:1 COG:BS_aspS KEGG:ns NR:ns ## COG: BS_aspS COG0173 # Protein_GI_number: 16079809 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Bacillus subtilis # 7 592 4 592 592 663 54.0 0 MEKIEKRTDYCGNITEKYIGQDVNLYGWVQRVRNLGNLVFIDLRDREGLVQIVVNKDSGK KLMDIADSLGNEYVVQVKGKVVKRSEVNPDMKTGQVEVDATEIIILNKAKNPPFEIKDGI EVSEQTRLKYRYLDLRRPEVQQAIILRSKILRATHEFFDENGFIDIETPILGKSSPEGAR DYLVPSRIYPGSFYALPQSPQLFKQLLMGAGFDKYYQLARCFRDEDLRGDRQPEFTQIDM EMSFADEETIQSYTEGLLKKIMKDVKGIDLKTPIKRITWTDSMNKYGCDKPDTRYGMLIH DLSPIFKDSDFKVFSGAIADGGFVKGIAVKNGAKEYSRKKIDKKADFIKRFHAKGLAWVK FEDGEFSGPVARFLTDENKEALKKEFDLEGGELVVFVADKWKVCCDSLDHLRREFAKETG IIPKGVYDFVWVVDWPLFEYDEGLGRWVAAHHPFTMPDDEGVKLLTTEPHKAHARSYDIV MNGDEMGGGSIRIHKRSIQENMFKALGFTKKRAYEQFGYLMDALDMGFPPHAGLAIGLDR FAMMLADKDNIRDVSAFPKNASASEPMMHAPAPVADQQLADLGIEVEEKYQDSVKATEER LEKMAAEDAAENSTWDK >gi|227861341|gb|ACKR01000208.1| GENE 16 14774 - 15958 1319 394 aa, chain - ## HITS:1 COG:L56488 KEGG:ns NR:ns ## COG: L56488 COG0436 # Protein_GI_number: 15672039 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Lactococcus lactis # 7 391 2 386 391 327 42.0 2e-89 MPNLSSDLTSTINERLNNLTASKIRAFDQKVSEISGIIKLTIGEPDLATPDHIKDAAIRD IQANDSHYAPQAGKPELLEAISNYLDRSIGVHYDPKSEICVTVGATGALNDVFMTLLNPG DKILVPTPVWALYFQLIKMTGAIPIQVDTKKDDFILTAEHLRHVLNGRGKGAKAIILTDP SNPTGRVYSATALKTLADVIKEYKIFSVTDEIYAELVYGKAKHHSLSEYIPDRNILISGL SKAYAMTGWRLGYIAAPKQIMKSIRKINSFLVTSVTDNVQIAAVEALNNGQNDPKKAREI YEARLNFMQSGLEKLGFEMATPQGAFYIFAKIPEKYGTNDEQFAFELAQKAKVGVTPGRY FGKGGEGYVRLSYASSTEQLKESLARISDFVNNL Prediction of potential genes in microbial genomes Time: Wed May 25 06:54:15 2011 Seq name: gi|227861304|gb|ACKR01000209.1| Lactobacillus crispatus JV-V01 contig00225, whole genome shotgun sequence Length of sequence - 34908 bp Number of predicted genes - 37, with homology - 36 Number of transcription units - 15, operones - 8 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 95 - 352 223 ## LCRIS_00989 putative protein without homology - Prom 424 - 483 9.1 + Prom 371 - 430 6.1 2 2 Tu 1 . + CDS 456 - 1646 1230 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase + Term 1840 - 1887 3.2 3 3 Tu 1 . - CDS 1660 - 1860 164 ## - Prom 1972 - 2031 8.3 + Prom 1856 - 1915 10.9 4 4 Op 1 . + CDS 2151 - 2369 257 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 5 4 Op 2 . + CDS 2461 - 2709 285 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 6 4 Op 3 1/0.000 + CDS 2764 - 2985 64 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 2988 - 3023 3.3 7 4 Op 4 . + CDS 3034 - 3846 732 ## COG0561 Predicted hydrolases of the HAD superfamily 8 4 Op 5 . + CDS 3913 - 4878 1051 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Term 4898 - 4931 3.1 - Term 4884 - 4917 3.1 9 5 Op 1 4/0.000 - CDS 4945 - 5988 930 ## COG0531 Amino acid transporters 10 5 Op 2 . - CDS 6000 - 6329 363 ## COG0531 Amino acid transporters - Prom 6354 - 6413 6.7 - Term 6385 - 6420 4.0 11 6 Tu 1 . - CDS 6427 - 7041 250 ## PROTEIN SUPPORTED gi|154175107|ref|YP_001408238.1| ribosomal protein L22 - Prom 7065 - 7124 6.6 + Prom 7024 - 7083 7.9 12 7 Op 1 . + CDS 7181 - 8983 1565 ## COG0322 Nuclease subunit of the excinuclease complex 13 7 Op 2 . + CDS 9062 - 10366 1568 ## COG0536 Predicted GTPase 14 7 Op 3 . + CDS 10382 - 12298 1210 ## COG1835 Predicted acyltransferases 15 7 Op 4 4/0.000 + CDS 12316 - 13254 800 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 16 7 Op 5 . + CDS 13251 - 14045 831 ## COG0300 Short-chain dehydrogenases of various substrate specificities 17 7 Op 6 . + CDS 14052 - 14300 208 ## LCRIS_01002 hypothetical protein 18 8 Op 1 . + CDS 14403 - 14591 330 ## PROTEIN SUPPORTED gi|227879080|ref|ZP_03996969.1| 50S ribosomal protein L32 + Term 14598 - 14629 -0.7 19 8 Op 2 . + CDS 14651 - 16207 1631 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases + Term 16221 - 16261 4.1 - Term 16197 - 16259 5.7 20 9 Tu 1 . - CDS 16269 - 16487 279 ## LBA0954 hypothetical protein + Prom 16513 - 16572 10.3 21 10 Op 1 3/0.000 + CDS 16603 - 19710 3001 ## COG0587 DNA polymerase III, alpha subunit + Prom 19777 - 19836 4.6 22 10 Op 2 12/0.000 + CDS 19878 - 20840 1133 ## COG0205 6-phosphofructokinase 23 10 Op 3 . + CDS 20874 - 22643 2486 ## COG0469 Pyruvate kinase + Term 22684 - 22718 3.2 + Prom 22682 - 22741 9.8 24 11 Op 1 . + CDS 22770 - 23663 451 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains 25 11 Op 2 . + CDS 23650 - 24555 858 ## COG4974 Site-specific recombinase XerD 26 11 Op 3 . + CDS 24603 - 24926 272 ## LCRIS_01011 reductase 27 11 Op 4 21/0.000 + CDS 24913 - 25653 444 ## COG1354 Uncharacterized conserved protein 28 11 Op 5 12/0.000 + CDS 25643 - 26233 633 ## COG1386 Predicted transcriptional regulator containing the HTH domain 29 11 Op 6 . + CDS 26237 - 26953 758 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Term 27120 - 27155 5.1 + Prom 27022 - 27081 3.4 30 12 Tu 1 . + CDS 27171 - 27860 673 ## COG3601 Predicted membrane protein + Term 27868 - 27906 7.2 + Prom 27879 - 27938 7.9 31 13 Op 1 . + CDS 27962 - 28423 429 ## LBA0966 putative N-acetylmuramidase (EC:3.5.1.28) 32 13 Op 2 21/0.000 + CDS 28475 - 29146 783 ## COG0283 Cytidylate kinase 33 13 Op 3 3/0.000 + CDS 29219 - 30427 2022 ## PROTEIN SUPPORTED gi|227879095|ref|ZP_03996984.1| 30S ribosomal protein S1 + Term 30436 - 30479 9.2 34 13 Op 4 3/0.000 + CDS 30499 - 31806 1269 ## COG1160 Predicted GTPases + Term 31814 - 31875 11.9 + Prom 31810 - 31869 6.5 35 14 Op 1 . + CDS 31966 - 32241 182 ## PROTEIN SUPPORTED gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 + Term 32257 - 32301 3.1 + Prom 32243 - 32302 4.1 36 14 Op 2 . + CDS 32322 - 33569 1109 ## COG0457 FOG: TPR repeat + Term 33577 - 33611 4.0 - Term 33564 - 33598 3.2 37 15 Tu 1 . - CDS 33610 - 34839 1059 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Predicted protein(s) >gi|227861304|gb|ACKR01000209.1| GENE 1 95 - 352 223 85 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00989 NR:ns ## KEGG: LCRIS_00989 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 85 1 85 85 111 96.0 6e-24 MQKLLLLTIFLLSLSACTKPQLSSVPRDKSATTIKIVDRKLELHQPTKRPLQPLNGILPH WLQMPDKSLPKPAIYTNLNTVLKNK >gi|227861304|gb|ACKR01000209.1| GENE 2 456 - 1646 1230 396 aa, chain + ## HITS:1 COG:lin1939 KEGG:ns NR:ns ## COG: lin1939 COG0452 # Protein_GI_number: 16801005 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Listeria innocua # 4 390 6 391 399 293 43.0 4e-79 MSRITIYMTGGIADYKAVNVIRDLEKAGHQVQIVMTKNAEHFVTTNTLAALTKYPVLDDL WSKENQSSIPHVHLARWTELALVLPATANFIAKMATGIADDAASTTILATSAPKLVVPAM NDQMWNNPATQRNIAFLKEHGVEIMEPAVGMLAEGYAAKGRMPEPGAIVAWIKNFTEQQN VLQGKNIVITAGGTEEAIDPVRFIGNRSSGKMGISLATEAAAMGAKVKLIYGNVSMPLPQ NPRITLIHVSSSEEMLVAVKKEFKHSNVLIMAAAVADWRMKQVADHKLKKQADQQTLTLT LVKTTDILREVASHKQRGQIVVGFAAETNNLLQNAAKKLSSKGADMIVANDVSKNVFGND EDQVTILQKNKSTKKWPKMSKRKIAQKLLQLIAQKI >gi|227861304|gb|ACKR01000209.1| GENE 3 1660 - 1860 164 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSYQLFLFSLLIPNTYNTSIYHLNKDKKHLLLTFSFHIIVFITCLKSLDAILQNDYKRNI DHIVHY >gi|227861304|gb|ACKR01000209.1| GENE 4 2151 - 2369 257 72 aa, chain + ## HITS:1 COG:BMEII1060 KEGG:ns NR:ns ## COG: BMEII1060 COG0656 # Protein_GI_number: 17989405 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Brucella melitensis # 6 72 24 90 294 66 44.0 1e-11 MYSDKTLMLNNGVEVPRIQLGTWLINNDDVRKVIRQAINVGYRAFDTAKDYGNESGVGKG IWNSDVESSDIF >gi|227861304|gb|ACKR01000209.1| GENE 5 2461 - 2709 285 82 aa, chain + ## HITS:1 COG:Cgl1021 KEGG:ns NR:ns ## COG: Cgl1021 COG0656 # Protein_GI_number: 19552271 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Corynebacterium glutamicum # 1 81 88 166 267 99 55.0 2e-21 MLLIHSPQPWIEVNRINDRHFEGNLENWRAMEEALKAGKVRSIGVSNFLQEDVANIVNNS SIKPVVNQIEVHIGNVPTDLMK >gi|227861304|gb|ACKR01000209.1| GENE 6 2764 - 2985 64 73 aa, chain + ## HITS:1 COG:Cgl1021 KEGG:ns NR:ns ## COG: Cgl1021 COG0656 # Protein_GI_number: 19552271 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Corynebacterium glutamicum # 1 61 187 247 267 61 47.0 4e-10 MLKDPRIRTYAEKYHVSPAQLMLAFDLQLGCIVLPKSDNVKEMQENLNIDFEISADDMAD LVKLKENTQTMAV >gi|227861304|gb|ACKR01000209.1| GENE 7 3034 - 3846 732 270 aa, chain + ## HITS:1 COG:SP1291 KEGG:ns NR:ns ## COG: SP1291 COG0561 # Protein_GI_number: 15901151 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 4 265 3 263 268 215 45.0 7e-56 MEEIKLIAIDIDGTLVNSKKEITPAVKKAILTAQKQGKQIVICTGRPLSDTQRYLDELGL NGQENQYVVSFNGAVVESTAGQVIFKQGLKYEDYVDLETIARKLNLHFHSVSLDRIYTAS RDLGHYTIYNSRVVKLEVSYRTQEEMKQIPIIKCMYVDDPDYLDDKIESPLFEMMKDRVV FSKTEPFYYEATAAGVDKGTGLKRLCDYLKIDRSNVMALGDQANDMPMLTYAGLGIAMGN AVEYTKQHADEVTADCDHDGVAVAINKILK >gi|227861304|gb|ACKR01000209.1| GENE 8 3913 - 4878 1051 321 aa, chain + ## HITS:1 COG:PAB0514 KEGG:ns NR:ns ## COG: PAB0514 COG0111 # Protein_GI_number: 14520969 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Pyrococcus abyssi # 1 312 1 306 307 224 41.0 1e-58 MNKAKVLVLGGLRDEALTDLKNICQVDIGPVGHRPEDDREWVLDHIAEYDGVIVAKMAFD REMIDAAKNLKIISTYGVGFDHVDVEYAKEKGIVVSNCPKSVLRPTAELAWTMIMASARR LHYYDDALREGVFLNADEYDNQGYSIEGKTLGIVGMGRIGQQVARFAKAFGMTIIYHNRH QVDDQIAAELDAKYVDLDTLAKEADFVSLHTPATAETYHLVNSDFLKKMKDTAFLINVAR GSLIDGDALIAALKNGSIAGAALDVFENEPHPRPELVEMDNVIMTPHVGSATHIARFNLS KEAANNVLSFFKDGQAINQIN >gi|227861304|gb|ACKR01000209.1| GENE 9 4945 - 5988 930 347 aa, chain - ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 2 344 118 460 463 327 49.0 2e-89 MLSVATVAAGWSSYFSSFIAPFGLKIPHAISGPMNLNNGVYFDLVSVLIILLISILLSRG MKNSIKINVVAVFIKIAIILIFIFVGLQFIKPNNYHPFLPYHFSGVIKGATTVFFAFLGF DVVSSSAAEVKNPKKNMPLGIIGTLAIAAVLYFGVSIVLTGMVNYTKLNVSNPVAFALQY VHQNWVAELLSFGAMLGMATMMLTMIYSSSRLIYAMARDGLLPSAFSKLDKKHNSPQNAL VAVTIIIAAGAAFFSVDQLANLVNFGTLFAFTLVSFGILKLRKRTDIVNDGFKVPGYPYL PIISGLICIFMICHLSSEVYLMAAIWLIIGAVIYFIYGYHHSQLDHD >gi|227861304|gb|ACKR01000209.1| GENE 10 6000 - 6329 363 109 aa, chain - ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 4 108 3 110 463 103 54.0 6e-23 MKFNIFRKQNVENYLGKDIKFSKTMNAVDLMSLGVGAVIGTGIFILPGTVAATLTGPGVS LSFVVAAIVCALAGMCYAEFASAIPVAGSAYSYGNIVYGEFTGWIIGWH >gi|227861304|gb|ACKR01000209.1| GENE 11 6427 - 7041 250 204 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|154175107|ref|YP_001408238.1| ribosomal protein L22 [Campylobacter curvus 525.92] # 3 190 6 184 199 100 29 9e-21 MTNLVFDLINQFGYLAISLLIAIENIFPPIPSEVILSFAGFATHHSQMNVFGVIIASTIG AVVGALVLYWIGTLLNPDRLEKLFDHKLFKLLGFKKGDVQKAIRWFDKYGTGAIFYGRCI PVVRSLISIPAGIAKVKLPNFLIYTSLGSLLWNAILVGLGSYMGENWEQIVLIFEEYSLI IGGLILIALIYFSCKWYKQKIKAD >gi|227861304|gb|ACKR01000209.1| GENE 12 7181 - 8983 1565 600 aa, chain + ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 1 596 1 586 603 586 50.0 1e-167 MATQLIENKLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYFKSKQVGRRAELVRE IRDYDIITVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHDPQTRLTSIVH KDGGYYFGPYPNVYAAQATLKFIQKVFPLRRCHGYQGRPCLYYHMGQCLGACFKKVPQKE YEEQIKKIKSFLNGDIASVKQSLTEKMAQAASNLEFERAAEIRDQLKYIEETVEKQKIIS NDNTQRDIFNYYVDKSWISVQIFFLRQAKLLRRETRMFPLTDATDPEDAFTSFIVQFYGQ RNRVLPKEILIPEGFDNATLAEVLKVPVRTPQRGQKKSLLDMAKDNAKLKLDDKFRLLEL GNRKTKGAQKEIFDALGLPYGHFIESFDHSHIQGADPVSALVVFKDGEPEKTAYRKYKLK GEVEHQNGGDEVRNTREVVRRRYGRLLREHKRMPDLILMDGGQIQVDACLDVLRNELNLN IPVAGMVKDDKHRTNHLLFGDPINGIPLKLIPLNPKSEGFYLMTRVQDEVHRFAITFHRR RHAKNALSSRLDSIKGIGPKSRNKLLREFGSLKKIKEASIDDLRRAGLTLTQAQTVKLTL >gi|227861304|gb|ACKR01000209.1| GENE 13 9062 - 10366 1568 434 aa, chain + ## HITS:1 COG:SPy1333 KEGG:ns NR:ns ## COG: SPy1333 COG0536 # Protein_GI_number: 15675273 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pyogenes M1 GAS # 1 433 1 436 437 432 58.0 1e-121 MPTFVDQTKIEVQAGKGGDGMVAFRHEKYVSNGGPAGGDGGRGGSIIFVADSGLRTLMDF RYRRKFKADSGENGRIKSQYGRAAKDLYLKVPVGTTVYDYDTNELIGDLTEKGQELVVAK GGRGGRGNIHFATSVNTAPEIAENGEPGEDRVLRLELKLLADVGLVGFPSVGKSTLLSVT TKAKPKIAAYQFTTLTPNLGMVILPDGRDFSMADLPGLIEGASQGVGLGIQFLRHVERTK VILHLVSMDPNNGREAIDDYHTIKKELKNYETDLSKKRELIVASQMDIPGAEEKLAEFKK ALKAEGNNEPIYEISSVTHKGVDKLMSDTANLVTEVEQEQAEEQPKLAQKIKEYKYQAPQ KNEFTVEQVGEHEFIVKGEQLERLVQMTNLDHQDGIMRLARKLKRLGVDDALREKGAVNG DDVAIGKFVFEFVQ >gi|227861304|gb|ACKR01000209.1| GENE 14 10382 - 12298 1210 638 aa, chain + ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 5 637 3 605 605 379 39.0 1e-105 MKKNRFITGYSGLRALAVIGVILYHLDPNSFMGGYLGVPIFFVLSGYLVTDHMFNSYDKT GSYNNRHFYLSRIKKLYPQLITVLWLSAAYIFIFQRNLLAKLNQVVLANLLNVFNFWQIH NGQSYFERFAANESPFTNLWTMSIEGQFYIVWPIVIYLLVKLVKKKKNIFWILVGLSAVS ALEMAILYFLKADINRIYYGTDTRFFSLGLGAALAVVWPIESLNQQVERKVGWILDLVGL ASFALMLAMFFSKWMNPQQAFTYSGGMLLFTLDVCILVAVIAHPGSHWNQILTNRLFDWI GSRSYGIYLYQFPVMIFFEDKVNIGDNPMLYHLIEVILILVITEITYRLIERPMGRITWD KTKQYFARIFNFETKDYFKKGQAALAALILILGSAAIAISPGVKAEDFNKSQLAQRINQN SKKQKTDNAKLIEKLKKEKKKKEKKSKIIREAELQTKKHPINKSFVKYGISQLDLQLAQH VQVTAIGDSVMAGSSNDLKRLMPKALIDAAVSRQLNVAFGLLDSYQSQGVLADNILIGLG TNGPFSMEDLDRIMHQAGPKRKVFWINVHVPTRDWQNSVNNLLNQGAKRYHNLIIIDWYS YSKNHPDWFYGDHTHPNLKGSKYYSALVTKTIVKHSKF >gi|227861304|gb|ACKR01000209.1| GENE 15 12316 - 13254 800 312 aa, chain + ## HITS:1 COG:lin2084 KEGG:ns NR:ns ## COG: lin2084 COG1234 # Protein_GI_number: 16801150 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Listeria innocua # 1 300 1 299 306 326 55.0 4e-89 MELQFLGTGAGQPSKQRNVSSVALKLLDELNEIWLFDVGEATQHQILRTNIKLRKVTKIF ISHNHGDHIFGLPGLLSTRSFQGDVGPITIYGPSGIEEFVRTALKVSRTKISYSIRFVEL AKSGLICEDKGFRVYTEQLDHRIPSFGFRVVEASHPGELLIDKLAQYNVPNGPLLGKLKN GEKVTLADGTVLDGKNFLGPTKPGRIVTVIYDTRSTPSIARLAKDADVLVHESTFAGDEQ KLAHDYYHSTSVEAAKIARKDNVKLLCLNHISARYMGAKGKKLEKQAKKVFSNTVLVNDF DQINIPMKGSEK >gi|227861304|gb|ACKR01000209.1| GENE 16 13251 - 14045 831 264 aa, chain + ## HITS:1 COG:BS_yqjQ KEGG:ns NR:ns ## COG: BS_yqjQ COG0300 # Protein_GI_number: 16079435 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Bacillus subtilis # 8 257 7 252 259 224 46.0 1e-58 MKDSLRNKVVVITGASSGIGRSIALESAGRGATVILIARRKDQLDEIAAEAKELSGAEAY VFPTDMGKPEEIEQTFNAITEQVKHIDFLVNCAGFGKFEEFMDQKMQDVTNMFQVNVLGL MYFTRLVGRVMMEQKTGQIINFGSIAGKVPTTKSAAYSSSKAAVIQFSNVLRLELKPFGV KVMTVNPGPVYTNFLNVADKTGNYVKNVQEFMLDPDDVAWQVVHFFGSDKRELNLPLSLA VAAKLYNLFPSIGDKISLKFASRK >gi|227861304|gb|ACKR01000209.1| GENE 17 14052 - 14300 208 82 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01002 NR:ns ## KEGG: LCRIS_01002 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 82 1 82 82 109 100.0 2e-23 MEKQRNLIIGSVVALIAVIFVVLNTSPVAINFGFFKVRLPLIVVLVVMVIIGMIIAWFFG RDTKEKTDHKVTFFNKKEKKIE >gi|227861304|gb|ACKR01000209.1| GENE 18 14403 - 14591 330 62 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879080|ref|ZP_03996969.1| 50S ribosomal protein L32 [Lactobacillus crispatus JV-V01] # 1 62 1 62 62 131 100 5e-30 MAVPARHTSKQKKRSRRGHIKLSVPAMHYDATTGEYRLSHRVSPKGYYKGRQVVNNNDNS NN >gi|227861304|gb|ACKR01000209.1| GENE 19 14651 - 16207 1631 518 aa, chain + ## HITS:1 COG:L99798 KEGG:ns NR:ns ## COG: L99798 COG0737 # Protein_GI_number: 15672285 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Lactococcus lactis # 1 517 1 515 519 366 38.0 1e-101 MKLVFLHSSDTHGFLLPTDYQNKTDYHAPFSLSRVSSVIKSEKKKYGDNNVVVTDAGDCL QGSPLASYAHSTGDYSDLRIFTQAYNAVGYDARCLGNHDFNFGLDYLSYYVDNNEAPIIN DNVLDAETEVPFLGREYTIIKRNGLKIGLLGITTQYIPHWEPKENVKGLKFASAYEKIKH YAKILRPQVDILAVMYHGGFESDPETGKATEPNRGENEGYQILTKIPEVDVLLTGHQHRR LNLVTRDTAIVQPGYRGEAVAEVVLDIDDDTKKIKSMSTKLIDTKDYDPDPVIVDIVSDL DKRTQKWLDQPIAHLDKPARIENAMKGRIEGAPFINLIQQMQLWFTKADVSATAVMSETA KGFDKTITMRDVLLNYPYANQLCRVKLTGKELRHIIEHSAGFLKKDEAGNIGFIDRWIKP KPMLYHFDVFYPVEYEADLSRPVGERLTKLTLHGKPIKDDQIYHLAVNNYRAMGGGFYPE YSMDKIETTLDKDYVQMFSEYLTHGPVEVDTKKNYKFY >gi|227861304|gb|ACKR01000209.1| GENE 20 16269 - 16487 279 72 aa, chain - ## HITS:1 COG:no KEGG:LBA0954 NR:ns ## KEGG: LBA0954 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 72 1 72 72 110 80.0 2e-23 MGRYIITTVWSVIYMLVVGFIAGPLTRSASFNGTDLRNCVIVGIIFGILFSAIIATITAR SHKDNSKYSKLK >gi|227861304|gb|ACKR01000209.1| GENE 21 16603 - 19710 3001 1035 aa, chain + ## HITS:1 COG:lin1609 KEGG:ns NR:ns ## COG: lin1609 COG0587 # Protein_GI_number: 16800677 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Listeria innocua # 1 1010 1 1015 1108 705 40.0 0 MQVAALQNISSFTLLSSPTKVSDLIKDAKEKGYPVVGLADVNVTYGLVNFYELAKKAGIK PLLGMQLRLNGLVDSTQKYDLLVFAKTNKGYHNLLRLSSAVNLLTENGQNDKVLTLNELT KYLDDLLIIVPANLKSELMALHDTNQALGSDYVRQLKKLTFDLYLGVYASKASIDYIDYV RGLAKQFELSLVAVEDSQYLRPREQFLQKTLRAIAKGDKLQDILPLAKQAGSHYLDSAQN VLERYHQYDLDDAINNTWKIAQKCNAEVIFQKPVLPKYHQDKFPTSEEYLRYLAQTGLQA RFGQKSIPAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHRVKITTGPGRGSACGSLV SYSLRITEVDPIQYNLLFERFLNPARHEMPDIDLDIPDIQRNTVIKYMYQKYGMDHAAQI LTFGTMAAKQVLRDVGRVFGLTGPEITKWTHAIPYSKDKMGLKKAYQESRELRLLVDATP ENKLLFKTALGLEGLPRHYSIHAAGLVISDDSIAGISGLQAGPFGIPVTQQTKKYVESLG LLKIDFLGLRNLTVLGNILALVRQQGVKLDPNTIPLNDPKTMELFQQGKTDAVFQFESGG IRGVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVARKNGTATVHYPDPSLKQILQSTYG ILVYQEQVMQTAQILAGFSLGEADILRRAMSKKNQNVIEQERGKFIAGTVKKGHPKEVGE RVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFYTAMLNSSTSAKAQSYSMQA QEAGVRILPPDINHSQLDYTLQDGKILVGLKAIKGLRLDFAKEIAANTKPYKSFNDFLRR IDAKFLQVDAIEALIMAGAFDSIEDNRNELLLNCKDVIANVQLTGQNMSLSEILGDAPLK PAEPPTAAQKAEMEEKALGFTTTTTPLIAVQKYAQKFNARPLNQFQLNDSGISVGKLMKL KQIRTKNGKTMAFASFADTSSEQEIIIFPPAYEKFGSILKEGDIYLLGVKVQGDRFDQNK KQYFLTNLRKVNFKE >gi|227861304|gb|ACKR01000209.1| GENE 22 19878 - 20840 1133 320 aa, chain + ## HITS:1 COG:lin1606 KEGG:ns NR:ns ## COG: lin1606 COG0205 # Protein_GI_number: 16800674 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Listeria innocua # 1 313 1 313 319 349 57.0 3e-96 MKRIGILTSGGDAPGMNAAIRAVTKTAIHHGLEVFGIRYGFAGLVAGDFVPLTTENVDHK ISEGGTFLYSARFPEFAQEEVQQKGVEQLKKHGIDAVIVIGGDGSYHGALALTRHGVNSV GLPGTIDNDIPYTDYTIGFDSACRTAMDAIDKIRDTASSHHRVFVVNVMGRECGDIAMRV GVASGADAIVIPERSYDVKEIAETLTRGFADGKDHGIIVLAEGVMAADKFKDELLKYGDF DARANVLAHMQRGGSPTVTDRVNATKMGNYAVKLLLDGKGGLAVGMENGELNTHDILDLF DGKHQGDYALLDVNEEMTKY >gi|227861304|gb|ACKR01000209.1| GENE 23 20874 - 22643 2486 589 aa, chain + ## HITS:1 COG:lin1605_1 KEGG:ns NR:ns ## COG: lin1605_1 COG0469 # Protein_GI_number: 16800673 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Listeria innocua # 1 479 1 475 475 516 58.0 1e-146 MKKTKIVSTLGPASNDIETITALAKAGANVFRFNFSHGDHPEHLARMKMVRQVEKDTGLL LGIDLDTKGAEIRTTEQEGGKFTINTGDMIRVSMDATKKGNKDMIHVTYDGLYDDTHVGG HVLIDDGLVDLLIKEKDDSKRELVCEAQNTGVIGSKKGVNAPGVEIRLPGITEKDTDDIK FGLNYGINFITASFARKAQDILDIRKLCEEAGADYVKIFPKIESQEGIDNADEILQVSDG LMVARGDMGVEIPFMEVPFVQKSLIRKANALGKPVITATQMLDSMQENPRPTRAEVSDVA NAVLDGTDATMLSGESANGLYPVKAVKAMAEIDERTEKQMLKRNTLALQRFEAYKGSNVT EAIGESVVRTAQELGVKTIITATNSGYTARMISKYRPNADIIAMTFDEKVQHSLGIVWGV QPVLTEKPKSTDDMFEMAAKVAKEKGYVKDGDLVIIVAGTPLGDSGTTNLMKLQIIGNKL VQGLGVGNGSVIGKAVVANSAEEANSKVKEGDILVAKTTDPDYNPAIKKASGLVVEASGL TSHAAVIGLSLGIPVVVGATDATDKISDGSTITVDARRGAIYQGKISNL >gi|227861304|gb|ACKR01000209.1| GENE 24 22770 - 23663 451 297 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 41 270 39 266 285 178 41 5e-44 MLGTVRKGKITDENDKAYYVQIDGLTYELKKIEITQDDIPKIGDEVEGFIYDNKSHDREM TQFLPFAQPDQYGWGKVTEVRPGLGVFVDVGLPDKDVVLSMDDLPREKERWPRRDDRLLV RLETDEKDRIWAKLADENIFDQLAANFPRGMNNENVFATVYVTREIGAFVLTSDYYLGFV HESQMPRPMRLGEQFKGRVVGVSQYGRLNLSALPRAFEEIDDDAQMILMSLRRRETKTLP FYDKSSAQEIKSYFGISKSAFKRAVGHLLKAGLIEEDKTAGTITLIKDPEENDNGED >gi|227861304|gb|ACKR01000209.1| GENE 25 23650 - 24555 858 301 aa, chain + ## HITS:1 COG:lin2069 KEGG:ns NR:ns ## COG: lin2069 COG4974 # Protein_GI_number: 16801135 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Listeria innocua # 6 300 1 296 297 258 43.0 1e-68 MEKINLKDQIDDYLRYSQVERGLSDNTINAYRQDLEEFQTFVENEGMASWPTEASDVDAF LARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSQAEM NRLLEQPNTKRKLGIRDRAILETLYATGMRVSELINLELQDLHDDLGLVRVLGKGEKERL IPISPVALDWIKKYENEVRDPLILQVGKSDEHIFLNNRGKKITRQAIWQMIKKYCQMAAI TKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQILNVYQKTHPR L >gi|227861304|gb|ACKR01000209.1| GENE 26 24603 - 24926 272 107 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01011 NR:ns ## KEGG: LCRIS_01011 # Name: ribT # Def: reductase # Organism: L.crispatus # Pathway: not_defined # 1 107 14 120 120 193 100.0 1e-48 MGLLSYLPDFKNIENLKEEITLNQDENDFILYLYRNSQNNMVGVIGTQVSNQFVIIRYLS LAPGFREISYERKIVDELKHEYPDKRITAVPEYTNLLKTVEEDNGQK >gi|227861304|gb|ACKR01000209.1| GENE 27 24913 - 25653 444 246 aa, chain + ## HITS:1 COG:SA1326 KEGG:ns NR:ns ## COG: SA1326 COG1354 # Protein_GI_number: 15927076 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 8 240 12 244 251 139 37.0 6e-33 MDKSNLTLELPNFEGPLDLLLHLIQSQKIDIYDIPIAQITSQYLEYLRQMQSLNLQIAGE YFVMSSTLLRIKSQYLLPQNDFVDDIQPDEDPRDELVQQLVQYSVFKKISAYFKERNEEV PITVAKEASVSTTAKVQPLPKGQITAQELATTFTMVLHRLKLQQPDTASIRVAETPINEM MDFLHGQLKRKRQVSFFACADKMQNISDVIGLFLATLELCKKQLIQITQAREFGDLNLER IDTNGK >gi|227861304|gb|ACKR01000209.1| GENE 28 25643 - 26233 633 196 aa, chain + ## HITS:1 COG:SP1875 KEGG:ns NR:ns ## COG: SP1875 COG1386 # Protein_GI_number: 15901703 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Streptococcus pneumoniae TIGR4 # 3 191 2 188 189 155 47.0 5e-38 MASKLANLEALLYVAGDNGLEEQNLIELLEVDGEELGQLVTRLQQKMKADPDSGMQIIHI ANTYKMTTSQQTAKIIEKYFQKDLTKNLSQSALEILSIIAYRQPITRIEIDDIRGVNSSG ALQTLIWRGLIKQDGKKDAPGHPKLYVTTDYFLQYFNYQSLADLPLIEDFEDTTDGEEID LFDSKGSADKHLEKEG >gi|227861304|gb|ACKR01000209.1| GENE 29 26237 - 26953 758 238 aa, chain + ## HITS:1 COG:lin2063 KEGG:ns NR:ns ## COG: lin2063 COG1187 # Protein_GI_number: 16801129 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Listeria innocua # 3 234 2 233 244 263 61.0 3e-70 MAERLQKVIAEAGIASRRKAEKMIVAGRVKVDGHVVTKLGTKVDTFSNITVDDEPIERES LHTYLFYKPRGVVSTAEDDRGRKTVVDYFEDLPYRLYPVGRLDYDTSGLLLMTNDGKLAN LLMHPKNEVAKVYVAKIKGILTPDEIKTLTQGVKLDHFKAAPAKVKVLKTDHKKDTQIVQ ITIHEGHYHQVKRMFKAVGHLVDKLAREKYAFLTLDSLTSGQYRELSKHEVDKLMQLN >gi|227861304|gb|ACKR01000209.1| GENE 30 27171 - 27860 673 229 aa, chain + ## HITS:1 COG:lin2059 KEGG:ns NR:ns ## COG: lin2059 COG3601 # Protein_GI_number: 16801125 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 7 216 2 179 203 76 30.0 5e-14 MDQAKSKNSSLTNVIAYALIGCIAFVVMKFEFPIMPGVAFLKFDFSDVIITIGMFIFGIV PGVIIALIRMLLSLIFSGFALPSLVGNLAAFLASMSFAVPFYLLSKNVSADNRKTMMGRV KPICGLVIGIIAMAAVMSLANAFVLTPIYAVTAVPNLPAINSYSALLSFTEKVYLGQLLH LPSMSTYIFSIIMPFNLLKGLINAVAVYLLFEATLKTIKPFVRKRFNLN >gi|227861304|gb|ACKR01000209.1| GENE 31 27962 - 28423 429 153 aa, chain + ## HITS:1 COG:no KEGG:LBA0966 NR:ns ## KEGG: LBA0966 # Name: not_defined # Def: putative N-acetylmuramidase (EC:3.5.1.28) # Organism: L.acidophilus # Pathway: not_defined # 1 153 1 153 153 158 77.0 6e-38 MDKKSTGPYQHYERPTEKRSSQDSQPSGSARWIAVIIILAVILIALIPVVHRLASSHSEK AEEVQTVKKVSSKSSKSVKTKKTSSSSCSKKKSEKASSSSSSSSATPKTYLVQSGDTLNE IAEKNGLTVDELARLNNLKDSSNIEAGQTLKLK >gi|227861304|gb|ACKR01000209.1| GENE 32 28475 - 29146 783 223 aa, chain + ## HITS:1 COG:SP1603 KEGG:ns NR:ns ## COG: SP1603 COG0283 # Protein_GI_number: 15901443 # Func_class: F Nucleotide transport and metabolism # Function: Cytidylate kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 220 4 222 223 203 52.0 2e-52 MQVAVDGPASAGKSTVAKIIASKLSFVYIDTGAMYRACTVIARNHNLDYGDEAGILNAID EDGIELKSENGEQKVYVAGKDVSKEIRTPEISANVSEVSALPKVREKMVSLQREMAGKTN VIMDGRDIGTTVLPNSEVKIFLVASARSRAERRLLDFKERGIKSDQTVDEIEKDIAARDY KDSHRKISPLKKADDAIEIDTTNMSIDEVVEAILAQIEKKQKN >gi|227861304|gb|ACKR01000209.1| GENE 33 29219 - 30427 2022 402 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879095|ref|ZP_03996984.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01] # 1 402 1 402 402 783 100 0.0 MSENSNQFLDALKQMQGVEVGDIVDVEVLDIEDGQIDVGVENAGVEGVITRREYTSDRNA DLRDLVKPGDKFKALVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEDGNAVEGTVT SSVRGGLIVDVGTRGFLPASLISNRYVSDLKPYIGKTMKLKITEIDPNKNRLILSHKDLV EEEREEAFDKVASQLVVGDVVEGKVSRLTNFGAFIDVGGVDGLVHISEISYKHVDKPSDV LKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATADLNEGDIFEGEVKSLTNFGAFV EVADGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDPSDRRISLSIKAADSNASS ENHNSRPRRSRNENSVNKKYMSDNDNGFALGDIIGDQLKDRK >gi|227861304|gb|ACKR01000209.1| GENE 34 30499 - 31806 1269 435 aa, chain + ## HITS:1 COG:lin2051 KEGG:ns NR:ns ## COG: lin2051 COG1160 # Protein_GI_number: 16801117 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Listeria innocua # 1 435 1 436 436 546 61.0 1e-155 MVLPVVAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGG ITWEGGKIEEEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIAHLLYRTKKPVILAVNK ADNPEQRSDIYDFYSLGLGDPIPVSSSHGTGIGDLLDQIVNDFPDDKDTEADDVISFSVI GRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTHDGVKFKVVDTAGIRRRGKVYE KTEKYSVMRAMSAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLPKK NSTSAKEFEREIRDEFQYLDYAPILFVSAKTGQRLDQIPNMVKEVYDNQNQRIQSSVLND LLLEASKLVPTPMVKGKRLRVYYMTQVSTNPPTFVVFVNDPELMHFSYERFLINQLRQNF DFTGTPIKILPRKRK >gi|227861304|gb|ACKR01000209.1| GENE 35 31966 - 32241 182 91 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] # 4 91 6 93 96 74 38 7e-13 MANKAELVSEVASKTKLTKKQVANTVDAILDSIQENLAKGEKVQLIGFGTFEVRHRAARK GRNPQTGDEIEIPASEVPAFKPGKALKDAVK >gi|227861304|gb|ACKR01000209.1| GENE 36 32322 - 33569 1109 415 aa, chain + ## HITS:1 COG:lin2036 KEGG:ns NR:ns ## COG: lin2036 COG0457 # Protein_GI_number: 16801102 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Listeria innocua # 1 413 1 417 417 175 29.0 1e-43 MSYSEQLLDAIQNHDFSQNKHLLKEALDNDAPEVLSSLAENLTGLGFTDLAKEIYRALIA KFPKEDLFKVYLAEIMLNDGDDDDGLSLLYNVPESSSAYLDSLLVQADYYQTNGLIETAK DKLIRALQLAPEEDAIKFGLAEIEYLSGNYEQALELYQDLIKRQSTFSEVNLYQRLFATF AKLGNYEEAAKVIREHANSILDIDSKYEAGLVLLSVGDDKQAIKFLDEVIEQSPDYVNAY PLLAQAYDHQHDNEQVLRTAQAGLAYNELDETLYSMGARAAANLNELDTARDLLEKGLKV APDNSDLRMQLSNLYVHEHQAKENIALFSNLDEESVEPQAHWNMALSYEDLDDIQKAQSE FLLAYPDFKDNPDFLRQMIIFFNVQNNDEITKQLLERYLKLAPEDDEMQDLYNNL >gi|227861304|gb|ACKR01000209.1| GENE 37 33610 - 34839 1059 409 aa, chain - ## HITS:1 COG:lin2646 KEGG:ns NR:ns ## COG: lin2646 COG1502 # Protein_GI_number: 16801708 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Listeria innocua # 16 409 99 482 482 370 50.0 1e-102 MLAEHDLLPEKKRKPRARMLSELNLNNDDAILTFANKVKVFTSGPELFDQIIADLKQAKT SISLEFYTFYNDNLGKRVLRALEEASAKGVKVRVIYDVSGSRGTKPAFFNHLRELGGEAQ PFISTSKKHWFTTPRLNYHLHRKLIVIDHHIGYIGGFNIGDQYVNQSKKFGHWRDTHLRV VGQSPILMETRFAMDWNTSIRRTALPKFDLSELHAFTVERKDLDNDDNVAMQIVSSGPDN QHYGIRRGYEGIIAGAKNYIYIQTPYLIPEESILEALIIAANSGVDVRIMIPCMPDHPFV YRATEYYAKYLVAHGVKIYKYNDGFIHAKTMVSGSNISSVGSANQDFRSYTLNFEVNAFN YNIQLTQELKQIFEKDLASCSLLTNEYFNQQSKWLKFKQYFSRLLAPIF Prediction of potential genes in microbial genomes Time: Wed May 25 06:54:34 2011 Seq name: gi|227861302|gb|ACKR01000210.1| Lactobacillus crispatus JV-V01 contig00226, whole genome shotgun sequence Length of sequence - 877 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 9 - 68 4.6 1 1 Tu 1 . + CDS 98 - 877 295 ## PROTEIN SUPPORTED gi|149021643|ref|ZP_01835674.1| 30S ribosomal protein S16 Predicted protein(s) >gi|227861302|gb|ACKR01000210.1| GENE 1 98 - 877 295 260 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149021643|ref|ZP_01835674.1| 30S ribosomal protein S16 [Streptococcus pneumoniae SP23-BS72] # 1 257 1 260 262 118 27 2e-27 MQRSDIETELGKINFAYRKGDPLVVFLNGFGSFDTAQSFSKVIEALPNKYGYFASDYLNS GFSGKSLKDYTVSDEATKLAKIINDFNAKKVIILAHSIGGVYAMQMKDKINNLKAFVGIE PTTREIMLNPPKEPAYIEKNKNMAKLQEKIEADLREIFTPEENKKFWTTTEQNAKKFDEK DNLNAQAAYENDSFWKNTTRISDKTPSIVITEKYRENEYKRSEYTSNNPKSKVITLGESH YIHFEYPKQIAEIVKEVIDL Prediction of potential genes in microbial genomes Time: Wed May 25 06:54:35 2011 Seq name: gi|227861296|gb|ACKR01000211.1| Lactobacillus crispatus JV-V01 contig00227, whole genome shotgun sequence Length of sequence - 3025 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 1, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 19 - 690 99 ## LJ1223 hypothetical protein 2 1 Op 2 . + CDS 522 - 1229 309 ## FI9785_957 hypothetical protein 3 1 Op 3 . + CDS 1303 - 1992 611 ## COG1478 Uncharacterized conserved protein 4 1 Op 4 . + CDS 2049 - 2552 465 ## LCRIS_01037 uridine kinase 5 1 Op 5 . + CDS 2555 - 3007 405 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes Predicted protein(s) >gi|227861296|gb|ACKR01000211.1| GENE 1 19 - 690 99 223 aa, chain + ## HITS:1 COG:no KEGG:LJ1223 NR:ns ## KEGG: LJ1223 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 223 3 223 223 282 77.0 7e-75 MRLKSVSFKIAILFLVFTAVFTLFRSSMSGIFSLFYAKNGIPDANIGSIKSFQNIGIVFG LLPAGYLADRIGRLKVLALSSLVIATSFFILILFRNFFFFSAAELLYGIGLALNSGTLLA YVTDLQEQNKIAPSSKLMGMQIIILNLTTLIGGNIGTWLFGIKDTALIWFAMLGLVLYPA FIWLMTSFLSFQIIGLLVKRKINIILKILLAFLEKEISGFCCC >gi|227861296|gb|ACKR01000211.1| GENE 2 522 - 1229 309 235 aa, chain + ## HITS:1 COG:no KEGG:FI9785_957 NR:ns ## KEGG: FI9785_957 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 53 212 1 160 179 196 80.0 8e-49 MVRNAWTCVISSLYLAYDKFLIFSDNRASSKKKDKYNIKNIVGFFRKRNFWILLLLNVGY DCGTQFILIYWSIIYVEKLGFNLSLVYTLFMCALILGSILFSKISTSFNSKGITLLNTGS MIGAFILSGTLKNKYLLLCLFLLIELLMGMMSGQISATSNEAIYGESNKSTMLSTVSFIA EILVSISLFISNSIMKVFGDLKVMFFCIRSVFWCCFANNTINKGERYQINHGNRS >gi|227861296|gb|ACKR01000211.1| GENE 3 1303 - 1992 611 229 aa, chain + ## HITS:1 COG:SPy0536 KEGG:ns NR:ns ## COG: SPy0536 COG1478 # Protein_GI_number: 15674636 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 2 224 3 230 244 187 46.0 1e-47 MITIEALHNFPKIERKCNLSAEIIRTIKNEGFNIRDNDVLCIASKLISKSEGLFVHLNSI NPSQLALRLHQQIPRKAPRLIQIIIDQTEDKSGKKLKISKNFIGGWLPNGLFLTSAGVDK IDAGTAIVLPKNCDEIAKRISDDIFDQLKVRVAIIITDSDGRIDKKGATQVAIGLYGVSG LRKSQYQDKTNVETICDMLAASAGLLMGQKGKMLPIVKIHGIDYNRLYI >gi|227861296|gb|ACKR01000211.1| GENE 4 2049 - 2552 465 167 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01037 NR:ns ## KEGG: LCRIS_01037 # Name: not_defined # Def: uridine kinase # Organism: L.crispatus # Pathway: not_defined # 2 124 1 123 145 249 97.0 3e-65 MMTSKLIIIRGNSGSGKTTLSKEIHRRLPHNTLLIPQDTVRREMLNVKDGEKTFALPLLE NLLEYGYHHCSYTILEGILNAKWYADLFKKSQQLFGDQIYAYYFDIPFEETMKRHKTRHE HSFGEETMRSWWNEKDYLGFIPEYAFTSQINLDDEVEIVMNDIQVED >gi|227861296|gb|ACKR01000211.1| GENE 5 2555 - 3007 405 150 aa, chain + ## HITS:1 COG:SPy0477 KEGG:ns NR:ns ## COG: SPy0477 COG0494 # Protein_GI_number: 15674593 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pyogenes M1 GAS # 1 146 1 154 158 121 40.0 4e-28 MVKNYIKTLRQKVGHEPIILNFAGGILANSKNEILLQKRSDFNAWGLPGGALEFGESAPK ACVREFLEETGLKVRTKSLLGVSTNFIQHYPNQDVAQAVTVELVEKMSKEISSETLDLKY FSKDKLSKIFNKQHQIFIDHYFNEDYPFID Prediction of potential genes in microbial genomes Time: Wed May 25 06:54:46 2011 Seq name: gi|227861294|gb|ACKR01000212.1| Lactobacillus crispatus JV-V01 contig00228, whole genome shotgun sequence Length of sequence - 770 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 4 - 765 449 ## LCRIS_01038 phosphorylase, Pnp/UDP family Predicted protein(s) >gi|227861294|gb|ACKR01000212.1| GENE 1 4 - 765 449 253 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01038 NR:ns ## KEGG: LCRIS_01038 # Name: not_defined # Def: phosphorylase, Pnp/UDP family # Organism: L.crispatus # Pathway: not_defined # 1 253 1 253 253 494 95.0 1e-138 MNEGSFVLDIDLSKKAVIEPGVENLEYKFHEKLLFAFVPDDEINSFLDKHSHKTLGKFKT VSFRPKIYEVEVNNQLITLCQAPVGAPASTKFLDWLINYGVKQVLSVGNAGALDNLPENT MFVPQEAIRGEGTSFYYKEPSKIIALDKNFVRRVENEIKNLGFQYEEGTTWTTDGFFRET PNQVLQAKKLGAKTVEMECSALAACAEFRNISFAQILFTADSLADMDNYDKRNWGHDSYS VSLNIGSQVLASL Prediction of potential genes in microbial genomes Time: Wed May 25 06:54:50 2011 Seq name: gi|227861291|gb|ACKR01000213.1| Lactobacillus crispatus JV-V01 contig00229, whole genome shotgun sequence Length of sequence - 1912 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 24 - 788 618 ## LCRIS_01039 phosphorylase, Pnp/UDP family + Term 790 - 839 7.0 - Term 784 - 821 3.2 2 2 Tu 1 . - CDS 830 - 1645 687 ## COG2746 Aminoglycoside N3'-acetyltransferase - Prom 1723 - 1782 4.2 Predicted protein(s) >gi|227861291|gb|ACKR01000213.1| GENE 1 24 - 788 618 254 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01039 NR:ns ## KEGG: LCRIS_01039 # Name: not_defined # Def: phosphorylase, Pnp/UDP family # Organism: L.crispatus # Pathway: not_defined # 1 254 1 254 254 518 98.0 1e-145 MNKQPFILDFDKHPHAVLEPNHDQEPFHFHPRLLYAFVPEKEINAFLDHHFHRTLGEFES CSFNPKIYEVQINNEFFTLCQAPLGAPAAVQLLEWLIAYGVEKVLTIGTAGALVDLPENA MLLPTRAIRDEGTSFHYMNPGQLVELDSIFLKEVEKILVELNIEYDEITTWTTDGFFRET PKKVAQFRQLGASTVEMECAALAACAQFRKIDFAQFLFTADTLADMDNYDERDWGGKSHS VGLNIGAKVLTKIK >gi|227861291|gb|ACKR01000213.1| GENE 2 830 - 1645 687 271 aa, chain - ## HITS:1 COG:lin1820 KEGG:ns NR:ns ## COG: lin1820 COG2746 # Protein_GI_number: 16800887 # Func_class: V Defense mechanisms # Function: Aminoglycoside N3'-acetyltransferase # Organism: Listeria innocua # 11 267 15 268 268 169 37.0 3e-42 MSEEIINTVTTKNDFKSALRNAGIKDDDTVLVHTALSKFYYVPNGPETIVEALKEAVPNG TIMMPSQVSTNCDPATWEYPPVQKSLIQVVKDAMPPYNPTTSMTEGLGVTPEYFRTLPDV VRSTHPYLPIAIWGKNKVKIAQNQPLNIPYGIDSPLDYLYQNNGKTIFLGTDYETCTVLH YAESTIGRKTETCSAATSLDESGKTIWTEYQNIDMDSYDDFNELGTEFEAKHPSAIKKVK LNNGVIKAINVKPLIDFARKWFIKKDNNHSI Prediction of potential genes in microbial genomes Time: Wed May 25 06:54:59 2011 Seq name: gi|227861270|gb|ACKR01000214.1| Lactobacillus crispatus JV-V01 contig00230, whole genome shotgun sequence Length of sequence - 16791 bp Number of predicted genes - 19, with homology - 19 Number of transcription units - 8, operones - 3 average op.length - 4.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 4/0.000 - CDS 28 - 426 394 ## COG0531 Amino acid transporters 2 1 Op 2 . - CDS 437 - 1363 590 ## COG0531 Amino acid transporters - Prom 1511 - 1570 7.5 + Prom 1496 - 1555 10.9 3 2 Tu 1 . + CDS 1591 - 2088 679 ## LCRIS_01044 lactocepin S-layer protein + Term 2099 - 2140 6.6 - Term 2085 - 2128 3.2 4 3 Tu 1 . - CDS 2132 - 3016 979 ## COG1284 Uncharacterized conserved protein - Prom 3039 - 3098 6.2 + Prom 3025 - 3084 5.4 5 4 Tu 1 . + CDS 3105 - 4304 1080 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase + Term 4314 - 4348 2.1 - Term 4302 - 4336 2.1 6 5 Tu 1 . - CDS 4341 - 5006 421 ## COG1272 Predicted membrane protein, hemolysin III homolog - Prom 5048 - 5107 9.9 + Prom 5000 - 5059 5.6 7 6 Op 1 . + CDS 5138 - 5971 992 ## COG1307 Uncharacterized protein conserved in bacteria 8 6 Op 2 . + CDS 5974 - 6204 232 ## COG4479 Uncharacterized protein conserved in bacteria 9 6 Op 3 . + CDS 6253 - 6678 267 ## LCRIS_01050 putative protein without homology + Term 6679 - 6723 -0.7 + Prom 6683 - 6742 6.6 10 7 Tu 1 . + CDS 6844 - 7200 108 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters + Prom 7202 - 7261 3.7 11 8 Op 1 . + CDS 7428 - 7847 465 ## LCRIS_01051 Na-H antiporter 12 8 Op 2 8/0.000 + CDS 7868 - 8707 1020 ## COG1161 Predicted GTPases 13 8 Op 3 2/0.333 + CDS 8704 - 9456 687 ## COG0164 Ribonuclease HII 14 8 Op 4 13/0.000 + CDS 9519 - 10367 806 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 15 8 Op 5 6/0.000 + CDS 10437 - 12548 2018 ## COG0550 Topoisomerase IA 16 8 Op 6 5/0.000 + CDS 12571 - 13887 1388 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation 17 8 Op 7 4/0.000 + CDS 13887 - 14795 681 ## COG4974 Site-specific recombinase XerD 18 8 Op 8 24/0.000 + CDS 14804 - 15328 722 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 19 8 Op 9 . + CDS 15340 - 16737 1246 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 Predicted protein(s) >gi|227861270|gb|ACKR01000214.1| GENE 1 28 - 426 394 132 aa, chain - ## HITS:1 COG:SPy2088 KEGG:ns NR:ns ## COG: SPy2088 COG0531 # Protein_GI_number: 15675845 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Streptococcus pyogenes M1 GAS # 1 115 316 431 447 68 36.0 3e-12 MLPKWIGKKNKHDAAWVAILLSAIITMILITQSYLFLVSCIVLASFIQYVPSILAVIKFK HTNEFPNNGFKLPFGYVIPALALIISCYMVTNFTWKTILVGIVVGVLAAVAYFFIEKDEE KHQKYLSKMRNK >gi|227861270|gb|ACKR01000214.1| GENE 2 437 - 1363 590 308 aa, chain - ## HITS:1 COG:L69353 KEGG:ns NR:ns ## COG: L69353 COG0531 # Protein_GI_number: 15672050 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 2 299 11 301 437 163 36.0 4e-40 MSIYFLGINGVIGSGAFLIPQTIYKDMNLMSVFITICAALTVSMVTLCYADLSSRFTGSG AAWLYSYHAFGRFTGYELGIYTWFLGCCTYAAEIVALLTILKTLSPVFSNHAVHYGIAIG IIVLIVLFTIINLFGRTIVKLVDNLSSAAKMITILIFIIIGAFFIHKMNFTPVIPKAATL GVGPYFKHFGAAFSVVFYMFTGFSFIPIAPKQMNNPEKNIPKVLISVMITVTILYALMML VAIGILGSKMVNYSTPIAVAFQKAVGDWGYVLVIAGMLISVIGVAFAGSFNTPSLIASLD SIVDCFSC >gi|227861270|gb|ACKR01000214.1| GENE 3 1591 - 2088 679 165 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01044 NR:ns ## KEGG: LCRIS_01044 # Name: not_defined # Def: lactocepin S-layer protein # Organism: L.crispatus # Pathway: not_defined # 1 165 2 166 166 285 98.0 3e-76 MNKKIMYMAGVVLASLSLGAMTAQTVNAATTNPIRQGKKLNLTRKATIFNRKGEKVGHLK KGRVYKILGIKSINGNNFVKIGKNKFVKEGAFLPYIKDTAETINRIKHPSYVYDKNGQPI PGKFVKQGSKVKNLGHKEIDERPFIQIGENEYVKANNVLTVIINY >gi|227861270|gb|ACKR01000214.1| GENE 4 2132 - 3016 979 294 aa, chain - ## HITS:1 COG:lin2023 KEGG:ns NR:ns ## COG: lin2023 COG1284 # Protein_GI_number: 16801089 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 11 283 9 279 288 263 52.0 4e-70 MRKIDKSILIDILMIALGCAIYALSLDMISVPNKLADGGLSGISLLLRHFWGINMGLSTL VLNIPLILLGYRFMGKRLLAYTIWGTLSLSFFLWFWHSVPIIKQLDLEHDLFLSAISAGL LSGIGLGLVFRYNGTSGGTDIIARICQIKFGISSGKMLLACDAIVLFASLSYLDIKHMLY TLLASFVLSRVMDTVQQGAYTARGLLIISDKYEQIGKMIDLKLNRGFTYLKALGGYQQNE KRVIYVVVAPREIPSIKALIKQEDPHAFVSIIEINEAMGEGFTYKKPHRFFIHK >gi|227861270|gb|ACKR01000214.1| GENE 5 3105 - 4304 1080 399 aa, chain + ## HITS:1 COG:SP1554 KEGG:ns NR:ns ## COG: SP1554 COG0617 # Protein_GI_number: 15901397 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Streptococcus pneumoniae TIGR4 # 7 395 1 390 394 322 44.0 1e-87 MIKIDNLPEIFTKAMPVLQILENAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVKE LFDKSIDTGIKHGTVTVLYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFT INALAMDTRGQIVDLFNGLDDLKNHVIRAVGDPEKRFHEDALRMMRAVRFMSQLEFKLES KTQQAIKDNHKLLKKISVERIREEFVKLGLGPHARQAFQVFLDTNLSEDVPDFGGKKDQL AIFPQLKFSPTMENSLWSLIILLLKLPNEQIHRFMRDWKNSNAMTEQVERIINLFDLLSS HAPSDYELFLAGEETLINTIDVAHIVGQPISSEALVDRYMALPIKKASELAVDGRFLIDR GMRPGAKLGQTLNKIRELVVSGEVENNQEAIESYLTTIE >gi|227861270|gb|ACKR01000214.1| GENE 6 4341 - 5006 421 221 aa, chain - ## HITS:1 COG:lin1978 KEGG:ns NR:ns ## COG: lin1978 COG1272 # Protein_GI_number: 16801044 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Listeria innocua # 17 221 6 210 210 181 51.0 7e-46 MKISKLWQQPEQRSERYYLLDNIFSAITHGIGFGLAVTGLVILIVKAAHTGSPMRVVTFT IYGSCLVLLYLFSTLYHSLVFTRAKNIFQIFDHSSIFLLIAGSYTPYSLVAIGGAWGWTL FGLIWGLTIFGIIYYIFNRGKHVILDTILYVAMGWLVILSGSYLYVRLSPTGFWLLVSGG IAYTIGAILFSMRNVPFIHTIWHLFVMLGSILMYFSVLLYV >gi|227861270|gb|ACKR01000214.1| GENE 7 5138 - 5971 992 277 aa, chain + ## HITS:1 COG:SP1112 KEGG:ns NR:ns ## COG: SP1112 COG1307 # Protein_GI_number: 15900979 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 273 7 274 279 192 40.0 4e-49 MTDSSVQLTPEEVEKYDITVVPLTITIDGKSYVDGIDITRSDFVKKMNEAESLPKTSQPP IGRFVDVIKKLTADGSQVIGIFLAKSLSGTIDAARQAAEIAGQSDNVTIIDSELTDRAEG FQVLAAAKDAQAGKSMAEIIDHVKKIRSTQKLEMMVVNLQNLIKGGRLGALSGRIATMLN IRIALQMPQGKLIVAKKGRGKKFTRAFDERVLKEIADNKEHIKEVGISYVDTPELMEELA EKIRAINPAINVLVAETSPIIATHAGNGAYAILYYVE >gi|227861270|gb|ACKR01000214.1| GENE 8 5974 - 6204 232 76 aa, chain + ## HITS:1 COG:lin1971 KEGG:ns NR:ns ## COG: lin1971 COG4479 # Protein_GI_number: 16801037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 70 4 68 77 63 55.0 7e-11 MAYRESFYRYLMTQRDADSADDVAQFANNAQHDLTFPKQEQDYEKLSDYLELNASYLPSM SIFDRAYRMYEDKMMY >gi|227861270|gb|ACKR01000214.1| GENE 9 6253 - 6678 267 141 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01050 NR:ns ## KEGG: LCRIS_01050 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 141 1 141 141 216 97.0 1e-55 MQVVIFIGFIVFAVAFATIIQQRFLKRISVNYIAMAIGAAIALVPQTNSLIEDFSSELFM GLIVAPLLFFEGQRTRLYNVLRSWGAIVGLTVIMIILATITAGFGIYFSMGLSTTGFYSG CNFNANRCYSNRICNTWIEAA >gi|227861270|gb|ACKR01000214.1| GENE 10 6844 - 7200 108 118 aa, chain + ## HITS:1 COG:SA2228 KEGG:ns NR:ns ## COG: SA2228 COG0025 # Protein_GI_number: 15928018 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Staphylococcus aureus N315 # 30 101 223 294 692 62 48.0 3e-10 MATLLVFLRQESFRSKYHLSAGVAMPVDVIFFLTPLIIYFLAEEIHVSGIIAVVAAGLIH NVESERSRLTNAFIFYNSNQLSQLLIDILNGIVFLLLGIIIVRSMREDILINKQLMRF >gi|227861270|gb|ACKR01000214.1| GENE 11 7428 - 7847 465 139 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01051 NR:ns ## KEGG: LCRIS_01051 # Name: not_defined # Def: Na-H antiporter # Organism: L.crispatus # Pathway: not_defined # 1 120 227 348 348 221 94.0 6e-57 MIVPTIVFHMILDKDIPDFDQRKEVDRVRVAMIEYAMDQMKKIYLPKKIRKQLKFDLRAQ MNQTSMVDFAREIKYTIKQKELPDDQKEFRAEVYRYAFRQERDYLGKIAQQERKYRRGFL ALYRQILMSEVVFLDDEND >gi|227861270|gb|ACKR01000214.1| GENE 12 7868 - 8707 1020 279 aa, chain + ## HITS:1 COG:SPy1161 KEGG:ns NR:ns ## COG: SPy1161 COG1161 # Protein_GI_number: 15675137 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 1 278 1 275 282 263 45.0 2e-70 MATIQWYPGHMNKARNQLEDKLGLIDVLVEVLDARIPQASRNPMIEGLVGNKPHIIILNK ADLADPVLTKAWAAELAGDNKYVLALDSLHNTNMQKLVSLVKKAAAAKTEKLEARGASNP TIRIALAGIPNCGKSTVINRLVGRNVAEVGNKPGVTKGQRWLKTNANIQVLDTPGILWPK FSDQEVGYKLAAFGAIKDSVFHADDVALFVLKNLREFYAKDLLKFSKLPEQQIADMADPD LLLSMTEKYGMRDDYDRFSLFMLQKLRKGAIGRITLDRP >gi|227861270|gb|ACKR01000214.1| GENE 13 8704 - 9456 687 250 aa, chain + ## HITS:1 COG:BS_rnh KEGG:ns NR:ns ## COG: BS_rnh COG0164 # Protein_GI_number: 16078669 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Bacillus subtilis # 1 248 4 254 255 242 53.0 5e-64 MTIKEIKELLKSEVSEAQINELEADPRAGVQKLLVSYRKRQAKLLAKKEEFLRRFSYEKK FWEKGQLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRLKLYPKILAE AVSVGIGVKSAEVIDQINIYEADRQAMAQAVRALDVKPNALLVDAMNVPVNLPQVKLIKG DAKSNSIAAASIVAKVFRDQLMDDYDRIYPQYCFHHNAGYGTKEHIEALKKYGPTPIHRK TFAPVSDFFE >gi|227861270|gb|ACKR01000214.1| GENE 14 9519 - 10367 806 282 aa, chain + ## HITS:1 COG:TM0250 KEGG:ns NR:ns ## COG: TM0250 COG0758 # Protein_GI_number: 15643022 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Thermotoga maritima # 45 274 38 263 337 196 44.0 4e-50 MKKTEFLLKLKLQKGIGYVKLLTIANQVTDETEIEFEELEQIELTEELMDACYRAFQDDQ LDRMVQQIEQQCDVISFFDEAYPEKLRQIYRPPMVLFTRGDISLLQKEIITIVGSRYPTK YSQDVINRLVPNIVQSGQVVASGLAKGVDALAHKAALFNQGKTIAVIGNGLNFSYPMQNF ALQEEIVQKGLLISEYLPDTPPRPYRFPERNRILAGLSQSIIVTEAKEKSGSLITANLAL QENRDIYAVPGPITNALSAGPNQLIEAGATPIVDFKFNKIKI >gi|227861270|gb|ACKR01000214.1| GENE 15 10437 - 12548 2018 703 aa, chain + ## HITS:1 COG:SPy1164_1 KEGG:ns NR:ns ## COG: SPy1164_1 COG0550 # Protein_GI_number: 15675140 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Streptococcus pyogenes M1 GAS # 17 581 28 589 589 699 63.0 0 MPTKAKSKTTKKRKKTLVIVESPAKAKTIEKYLGRNYHVIASKGHIRDLPKSQMGIDFED DYKPKYISIRGKGDTIKELKSEAKKAKDVYLASDPDREGEAIAWHVAHALNLDEKAKNRV TFNEVTKDAVKESFKHPRTIDMDTVDAQQARRVLDRIVGYSLSPILWAKVKKGLSAGRVQ SVALKLVIDREKEIKNFKPKEYWSIDAEFAKGKETFKSAFYGVDGKKKELPNIDSVKDVL AKIDKKKDFVVDKVVARQRRRQPAAPFTTSTMQQEANKRLGYRTRRTMSIAQQLYEGISL GKQGTVGLITYMRTDSKRTSPVAQQEASKFLHENYGAEFAAKSQRHFKNQEDAQDAHEAI RPTSVYRTPESLKSVLTTEQYRLYKLIWSRFLASEMTPAVYDTVRADIVQNGVIFRTTGS KLKFAGFTKVYDNQQEKNVDLPDLEEGDKVKMTKSDNKQHFTLPPARYTEASLVHALEEN GVGRPSTYAPTIDTIQRRYYVKLDGRSIVPTELGEIVDGLIESFFPDITDVDYTARLENE LDEVEDGKKDWVHVVDEYYQPFKKELNKADSEIEKVQIKDEPAGFNCDICGAPMVIKMGR YGKFYACSRFPDCRNTKPIIKEIGVVCPKCGKGQVVEKKSRRNRKFYGCSRYPECDFVSW DKPIGRNCPNDGHFLVEKHSKKGPVILCPNGDYREDSENEKNN >gi|227861270|gb|ACKR01000214.1| GENE 16 12571 - 13887 1388 438 aa, chain + ## HITS:1 COG:lin1315 KEGG:ns NR:ns ## COG: lin1315 COG1206 # Protein_GI_number: 16800383 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Listeria innocua # 1 436 1 434 434 567 65.0 1e-161 MPKNVTVIGAGLAGSEATWQLAKRGIHVDLYEMRPKKETPAHETGEFAELVCTNSMRSNQ LSNAVGLLKEEMRHLDSLIMKAADKTQVPAGGALAVDRDSFSKYVTDTLRGLENVTVHEE EVTEIPKDGITIIATGPLTSDALAGQIQKFSGTDSLHFFDAAAPIVAADSIDMKIVYKKS RYDRGEAAYLNCPMTKEQYEKFSQELINAETAQLHGFENSDVFEGCMPIEVMAARGAKTM LFGPLKPVGLEDPHTGKTPYAVVQLRQDNAAASMYNIVGFQTHLKFGEQKRVFSMIPGLE NARFVRYGKMHRNTYMASPEVLTASYEAKEQPGLFFAGQMTGVEGYVESAGSGLVAGINA AREAMGKDTVAFPKDTALGSMANYITTTSAKHFQPMNASFALLPPLEGKKIRKKRERHEK VSERGLASLDEFKTEVLD >gi|227861270|gb|ACKR01000214.1| GENE 17 13887 - 14795 681 302 aa, chain + ## HITS:1 COG:BS_codV KEGG:ns NR:ns ## COG: BS_codV COG4974 # Protein_GI_number: 16078677 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 11 298 11 299 304 234 42.0 2e-61 MNQRQSELDQFLSYLQNERHYSAKTVLAYQTDLHEAERFWHENGGFPGWTKVRERDIQVY LQHLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTKGITLRRGEKKLPQFFYQPEL KQVFDSLKGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTILVHGKGNKDRY VAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQKTFNQAGISG KVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFPRNK ES >gi|227861270|gb|ACKR01000214.1| GENE 18 14804 - 15328 722 174 aa, chain + ## HITS:1 COG:lin1317 KEGG:ns NR:ns ## COG: lin1317 COG5405 # Protein_GI_number: 16800385 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Listeria innocua # 2 174 6 179 179 184 56.0 8e-47 MTTICSVRFNGKTAIAGDGQVTLGEKVIAKATARKIRRIYHDRVVIGFAGGVADAVSLQD MLEGKLESYSGDLRRAAVEMAQAWRKDPTLQKLNAMLIAFDDKDLLLISGNGEVLEPDEN VVAIGSGGNFAQAAAIAMTRHAKDMKADEIAHEAVKIASGIDVFTDDKIVTDEI >gi|227861270|gb|ACKR01000214.1| GENE 19 15340 - 16737 1246 465 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 5 465 9 466 466 484 54 1e-136 MAIKTPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLSKEMQREVTPKNLLMAGPTG VGKTEIARRLADIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVSEAVRMEEKDQFARVK TQATKEANKELVRLLAPAEKHERRENQMQQMQDMMSMLMGENNREEDHEEDVSADVRNKR MDVAEKLAKGLLEDHEVTIEVEQAPKANPMSDMMGQMGMDMGSMLSDLMPKKKVKRTLSV KEAREVLIQEESRKLVDYDAIYQHAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSREGVQ RDILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKD DFVKILKDPQNSLLKQYIALMKADGIKLVFTQEAVDKIAEIAFDVNQGTDNIGARRLSTI LEKLLEDVLYEGPDMEMGEITVTEAYVEDKLGDIIMNKDLTKFIL Prediction of potential genes in microbial genomes Time: Wed May 25 06:55:08 2011 Seq name: gi|227861266|gb|ACKR01000215.1| Lactobacillus crispatus JV-V01 contig00231, whole genome shotgun sequence Length of sequence - 2892 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 14 - 73 3.2 1 1 Op 1 . + CDS 102 - 998 886 ## COG2017 Galactose mutarotase and related enzymes 2 1 Op 2 . + CDS 1016 - 1837 657 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 1843 - 1896 3.4 + Prom 1992 - 2051 5.9 3 2 Tu 1 . + CDS 2125 - 2817 729 ## LCRIS_01064 aggregation promoting factor Predicted protein(s) >gi|227861266|gb|ACKR01000215.1| GENE 1 102 - 998 886 298 aa, chain + ## HITS:1 COG:CAC3032 KEGG:ns NR:ns ## COG: CAC3032 COG2017 # Protein_GI_number: 15896283 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Clostridium acetobutylicum # 5 290 5 295 298 210 39.0 3e-54 MDYTIKNNMIEVVISDHGAEVQSVKGAHTGEEYMWQADPEIWGRHAPVLFPIVGRLKNDE YKYQGKTYHMGQHGFARDCDFEVENHTQESITFLLKDNEKTREMYPFKFEFRVNYNLMNN LLEENFSVVNKSDETMIFGVGGHPGFNLPVNNGEEKEDYYFDMHPSIARVKIPLKGAYLD WNNRSLASTDSFIGLSDELFKDDALIYELHGHDNKVSLRTDKSKFHINVWTRNAPYVGIW SQYPNTANYVCIEPWWGIADREDADGELEHKYGMNHLEPGKEYQAGFSITYHSASDPE >gi|227861266|gb|ACKR01000215.1| GENE 2 1016 - 1837 657 273 aa, chain + ## HITS:1 COG:TM1009 KEGG:ns NR:ns ## COG: TM1009 COG0656 # Protein_GI_number: 15643767 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Thermotoga maritima # 4 256 6 264 286 215 44.0 7e-56 MKYLTFNNGVKTPIFGFGTYRIQPRITEGAVVEALKAGYRLIDTAQAYSNEAEVGNAINK SGIKREDIFLTTKAQTSGYRETKNGIDESLIHAQQDYFDLMIIHWPMSDSLGTYQALEEA YQVGKLRSIGLSNFNHDQVNEIMNNFDTKPVVDQIETSVFKQQKKMHKYLIENNIVHESW SPLGEGMKALFNDPTLLSLAEKYNKTVPQIALHFLVQENIMTIPGSTNPLHMKDNLDIFD FEFTAEEMETLRGLDQKRGIGGWPASMDQELDY >gi|227861266|gb|ACKR01000215.1| GENE 3 2125 - 2817 729 230 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01064 NR:ns ## KEGG: LCRIS_01064 # Name: not_defined # Def: aggregation promoting factor # Organism: L.crispatus # Pathway: not_defined # 1 230 1 230 230 251 98.0 1e-65 MKTKSILTKTIAVAALSLAGIGAINQLDNNEAQAAVVQNDAAVYTTTQATTVYNNYENPV ATGQTLAAGTNWKIIKTAYDSKGQKWYDLGLNQWVLATNYTTSQNTQARQENTYTQTQTP AQQTTQASQSQSSYTYSNVNYTPKTTTTSSYSSTATGSEASAKAWIASKESGGSYSARNG QYVGKYQLSSSYLNGDYSAANQERVADNYVKSRYGSWSAAKSFWQANGWY Prediction of potential genes in microbial genomes Time: Wed May 25 06:55:16 2011 Seq name: gi|227861254|gb|ACKR01000216.1| Lactobacillus crispatus JV-V01 contig00232, whole genome shotgun sequence Length of sequence - 12106 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 7, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 26 - 841 510 ## LCRIS_01065 integrase-recombinase - Prom 869 - 928 7.6 + Prom 858 - 917 10.5 2 2 Op 1 11/0.000 + CDS 1107 - 1505 226 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 3 2 Op 2 . + CDS 1502 - 1879 426 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 4 2 Op 3 . + CDS 1899 - 2120 187 ## LCRIS_01068 homocysteine S-methyltransferase 5 2 Op 4 . + CDS 2114 - 2890 705 ## COG0833 Amino acid transporters + Term 2931 - 2980 7.5 - Term 2876 - 2930 8.1 6 3 Tu 1 . - CDS 2992 - 4398 1772 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 4426 - 4485 10.3 + Prom 4382 - 4441 8.9 7 4 Tu 1 . + CDS 4585 - 5091 514 ## COG5015 Uncharacterized conserved protein + Term 5092 - 5154 14.1 - Term 5085 - 5136 10.4 8 5 Tu 1 . - CDS 5139 - 6611 1456 ## COG0531 Amino acid transporters - Prom 6705 - 6764 8.0 + Prom 6664 - 6723 6.9 9 6 Op 1 . + CDS 6844 - 8931 1883 ## COG1982 Arginine/lysine/ornithine decarboxylases 10 6 Op 2 . + CDS 8942 - 10201 1428 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance + Term 10211 - 10268 9.1 + Prom 10234 - 10293 12.0 11 7 Tu 1 . + CDS 10321 - 12090 1349 ## COG0514 Superfamily II DNA helicase Predicted protein(s) >gi|227861254|gb|ACKR01000216.1| GENE 1 26 - 841 510 271 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01065 NR:ns ## KEGG: LCRIS_01065 # Name: not_defined # Def: integrase-recombinase # Organism: L.crispatus # Pathway: not_defined # 1 271 1 271 271 507 98.0 1e-142 MTFPYEDKFRIYCKQQKKLADSTISLACSSISTFWDYYSGSLDATEANVENVTTGDIRNF LDSLENKLHMKSNTVNKYLSHIKMYFVFLNEYGYIITYPLLTLRGNRFNRKQHYVIGWEN HLSELIQIKNIHPETIKMMAAIACGFKPKEIMILHVNELLVKVKENDVREYIQNHTNFAN NDNPYLFARRDGKHYASDFNINPKIAPDRSIVGMPLTTHKLRMSYVYSVLSNSKLREADY IEKLHLSMKTLNYYRKNMTLYVETSKFELKK >gi|227861254|gb|ACKR01000216.1| GENE 2 1107 - 1505 226 132 aa, chain + ## HITS:1 COG:lin2188 KEGG:ns NR:ns ## COG: lin2188 COG0239 # Protein_GI_number: 16801253 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Listeria innocua # 8 121 3 120 129 65 36.0 2e-11 MNSKFINYISIAIFAFFGGMARAGLNANFSYYGTFWGNVIGCFLLAFFTYFFIETKEIRQ WLVVGLGTGFVGAFTTFSTFNLDVLKNMQANLPIEAVIYYFSSIIFGFFFAMLGMKIGKK VGQLVRKERNTR >gi|227861254|gb|ACKR01000216.1| GENE 3 1502 - 1879 426 125 aa, chain + ## HITS:1 COG:lin2187 KEGG:ns NR:ns ## COG: lin2187 COG0239 # Protein_GI_number: 16801252 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Listeria innocua # 1 121 3 117 118 76 42.0 1e-14 MNFLLAGIGASIGAMLRYAITNYGKKHWEWIGNKFSNLPTPTLFINLTGVLILGLIFGIG ANTFIYALLGTGVMGGYTTFSTMNTELVELYKSKNYRGLVFYAVSSYLGGLVLVYCGYYL GNLLK >gi|227861254|gb|ACKR01000216.1| GENE 4 1899 - 2120 187 73 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01068 NR:ns ## KEGG: LCRIS_01068 # Name: not_defined # Def: homocysteine S-methyltransferase # Organism: L.crispatus # Pathway: not_defined # 1 73 1 73 73 137 97.0 2e-31 MGLLEQIKNRGLVLDGAMSYELEKQGVDTNNKLWTATALIDQLSKVYQAHWDWLIFIKMA GSPTAGVEYLQQC >gi|227861254|gb|ACKR01000216.1| GENE 5 2114 - 2890 705 258 aa, chain + ## HITS:1 COG:ykfD KEGG:ns NR:ns ## COG: ykfD COG0833 # Protein_GI_number: 16128245 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 253 218 469 475 271 56.0 1e-72 MLTVNFAFSGTELIGITAGEAENPQKAIPEAIRTTLWRLIIFFIGSIVVMAALIPYHTAG VTQSPFVYVLDLIHVPFAANIMNFVVLTAIISAANSGLYASTKMLWSLGNEGTIPKAFTK TNKRGIPVLSLVVSMLDGIFALISSKVAASTVYLVLVSISGLAVVFVWTAIAWSELKFRR AFLNSGHQLSELKYKTPWYPVIPYFAFISSLLSCVLIWFDPTQRVALYYTIPFVAICYLG HHFWLKSKKNNEEVLLEK >gi|227861254|gb|ACKR01000216.1| GENE 6 2992 - 4398 1772 468 aa, chain - ## HITS:1 COG:SPy1070 KEGG:ns NR:ns ## COG: SPy1070 COG0624 # Protein_GI_number: 15675062 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pyogenes M1 GAS # 3 465 4 469 469 407 47.0 1e-113 MNIDYKKLVQAKKDDILRDLDELIAIDSSEDLNNTSEEYPVGPGPVKAMKKFLSFAQRDG FHIKNVDNYAGRVDYGTGEKRLGIIGHMDVVPAGDGWVTDPFKMLIKDGKIIGRGSADDK GPALAAYYGMLLLKEAGFEPKKKIDFIVGTNEETNWVGIDYYLKYEPTPDQVFSPDAEFP IINGEQGIYTLTMTFKDDNKKGSVVLKSFKAGIAENVTPQKAYATIVGSDLATMKEKYTK FLSDNKLEGEFTIEGDEAKIELTGQGAHASAPQVGRNAATFLAVFLDQFDFAGRDRSWLH FLADVEHEDFNGKKLGVAHHDDLMGDLSSAPSMFDYEKNGNAVLKDNIRYPQGTDPDKMV KQVEEKFGDILTQSFASFEEPHYVPGDDPLVQTLLKVYERQTGNKGHEVVIGGGTYGRLF KHGVAYGAQPEDAPMVMHQANEYMKVDDLINSIAIYAEAIYELTKDAE >gi|227861254|gb|ACKR01000216.1| GENE 7 4585 - 5091 514 168 aa, chain + ## HITS:1 COG:MA0739_1 KEGG:ns NR:ns ## COG: MA0739_1 COG5015 # Protein_GI_number: 20089624 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 27 143 33 142 163 58 29.0 5e-09 MRQHVPELDRNLSNDEFLDLIVDCFHSVIFGTVDQNGDPHTNIIDIDFNEDGRLIFATTN QKSFYRHIKGHNKVSITALRGRETLTSIGFTLEGYVDEVSPQYLERIYKIKPQMHHIYAN KTKDMNTLRAFALTPIIGSVYDLRFDHVFQKQFDFVNVPSKMQVEILE >gi|227861254|gb|ACKR01000216.1| GENE 8 5139 - 6611 1456 490 aa, chain - ## HITS:1 COG:L119780 KEGG:ns NR:ns ## COG: L119780 COG0531 # Protein_GI_number: 15673092 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 18 486 6 476 488 318 37.0 1e-86 MSETIETVNFEPEKKHYMSWPVIALIDFVTIISFENIFYPFQNQGLSVVVSWIFLLFAYV IPYALMSSQMGLTFTDQAGGLASWVRHSSNDTLGYWTSWMYWVQTVPYLVDVSNSVIVSF SWIILGNNTLDKHMSTFWFGILTFVIILAFILVENAIKNSLELLSLIGGGAMFIMSMLFV LLAVWSVMHGHHIATQPFNLAAFKPSFSLRYFSTTGLLIFAMSGAELAAPYIVQMRDPKH EFPKAMWMLALMTGFLTIFGTLALAMFFNAHHIPHDFKMNGPYYAFQLLGESLGWGKVLM YIFAVVQALFMMAQLAVLLDASSRVFAGDVADKFMPKWLTGKKDKTGRPVHSYTLTCGLA LFLLLLTGTLPNINSIYNWLLNINGIISPYKTCWVFFAFIMLRMHQEKFHSDYVFIKNKT GALIMGWWCLIFTFICATLGFIPQEAEATFGSAAFNHQLIMNIITVIVLFGLGFLLPYLR KREERKEMNI >gi|227861254|gb|ACKR01000216.1| GENE 9 6844 - 8931 1883 695 aa, chain + ## HITS:1 COG:HI0591 KEGG:ns NR:ns ## COG: HI0591 COG1982 # Protein_GI_number: 16272535 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Haemophilus influenzae # 33 683 32 708 720 604 43.0 1e-172 MDFLKIAIGNGVNVNKMKGWSSIPIGDVQNSAELAAIVVKNDDALGIKQAEALREQSGFP IPLIKVTDQVDEDQVTPKATEYEKQMVPGFLTDLINFAQAKPISFTTPGHHNGQYYDKHP AGVVFNKFFGKNLMFADTSDTVPQLGDTMTHAGTPLNAEKKAAKTYHADKVYFCTNGTTS ANSICASALLSEGDLVLFDRNNHKSLYNSALVMSGAKPVYIPTDRNALGLIGEMDPAFLT EDKIRAEVAKIDPAKAKAKRPFRLAIVQAETYDGVFYDAQWIIDRIGKLCDYVLFDCAWG GFEEFVPIMRHLSPLLLNLGPDDPGILVTQSLHKQQAGMAQASQILKKDAHIKGQKRYVD HKHFNHAYLKFVTSSYAYPLYASLTVNSYVTAGAGNKKWWDQTLRMGIEWRKKLLKKSKL FKPLVPDNFAEISTDELATNAEYWEMGQNTDWHGFRKMVPGEAMIDPLKITVKTPGIDVK NAKYEKVGIPGAVVAEYLMENHIIRAKNDLNSLLFLLTPGDSQAELDTLLEAFLSFEKHY LEDDLMKDVLPVLYNEYPKRYQGYTLKQLCQEMHEYYQENNTFVLQQKLFSKSGMQDYQM TPATADQLFKKDQNELVNLENVVGRIAAEGALPYPPGVFIVAPGEKWGTVDQKYFEVLAH AIEKFPGFVPEIQGVYLSENNNGSLCVQAEVIKNK >gi|227861254|gb|ACKR01000216.1| GENE 10 8942 - 10201 1428 419 aa, chain + ## HITS:1 COG:BS_ynbB KEGG:ns NR:ns ## COG: BS_ynbB COG4100 # Protein_GI_number: 16078807 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Bacillus subtilis # 24 419 25 418 421 407 48.0 1e-113 MSFSWKENLPKELNDKVTKVEKMIQPRLEKIDEQVLYNQQRVLDLFRKHHVGEEDLVPST GYGYDDIGRDKIEDIYADYFKTDDALVRPQFGSGTHAITVGLFSMLRPGDTLYYLTGTPY DTIQEVIGLAGNKPGNMKEWGINFKTTELKNGEVDYDQAKKDIMDPSIKVVAIQRSLGYA TRKTFTMAKIKPMLKFIKEVRPDVNIFIDNCYGEFSECEEPTFYGADLMAGSLYKNAGAG LVKGGAFLVGRQDLIDGAGSRLTVPGAGKGEGATWGYLRDIYQGFFMAAHTTGEAQKGMV FTAALLEEMGMQVSPKWSDPRSDIVQTVTFGKPDPMVKFCAAIQHYSPMNSFVDPIPYHQ DGYEDEVVMASGSFVEGSTIELSSDGPLREPYMLYIQGGLSYAHDKIAITHAVEETFYK >gi|227861254|gb|ACKR01000216.1| GENE 11 10321 - 12090 1349 589 aa, chain + ## HITS:1 COG:L0268 KEGG:ns NR:ns ## COG: L0268 COG0514 # Protein_GI_number: 15673790 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Lactococcus lactis # 1 589 1 591 592 557 48.0 1e-158 MNPEEVLKDTFGYTNFRPGQKQVIDLVLKKQNVLAVMPTGGGKSMCYQIPALINPGVTLV ISPLISLMKDQIDNLKQNGINAAALNSTTPQEEVNPILRQAYEGKIKLIYITPERLAIDY FRYQLNFLDIDLVAVDEAHCISQWGHDFRPAYRQLLDGINSLKSRPNILALTATATPAVQ DDICEQLNIPKENMIVTSFARPNISFKVVNSPQNTPLYISEYIKAHQDKAGIIYTNTRKK VESLTDYLAKKGISVGAYHGGMDSSERSQVQEAFQFDEFQVIVATNAFGMGIDKSNVRFV IHASSARNMESYYQEAGRAGRDGEESEAILIYHPGDLRQYRYFIDESDADDKYRELQYRK LQTITDYANTGECLQQFIVRYFGQDCPPCGKCSNCLNQDKLTDITIDAQKVISMVYELDG RFGKTIVAQCLIGSKNQRMQEMNATQYKSFGSLRMKQKDAISLIDYLIASGYLEVEGSKY PLVHVTNHGWDVLDGKTVVKRRIAKISVTTTHAGEESDTLFEALRQKRLELAKQQKVPAF MIFSDRSLHDMAQIKPQNESEFLEVSGVGQAKMKKYGQAMMEIIKRKGK Prediction of potential genes in microbial genomes Time: Wed May 25 06:55:22 2011 Seq name: gi|227861252|gb|ACKR01000217.1| Lactobacillus crispatus JV-V01 contig00233, whole genome shotgun sequence Length of sequence - 204 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:55:22 2011 Seq name: gi|227861250|gb|ACKR01000218.1| Lactobacillus crispatus JV-V01 contig00234, whole genome shotgun sequence Length of sequence - 214 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:55:23 2011 Seq name: gi|227861248|gb|ACKR01000219.1| Lactobacillus crispatus JV-V01 contig00240, whole genome shotgun sequence Length of sequence - 920 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 52 - 909 483 ## FI9785_169 putative transposase Predicted protein(s) >gi|227861248|gb|ACKR01000219.1| GENE 1 52 - 909 483 285 aa, chain + ## HITS:1 COG:no KEGG:FI9785_169 NR:ns ## KEGG: FI9785_169 # Name: not_defined # Def: putative transposase # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 285 1 285 285 530 90.0 1e-149 MNYLKLNRFSHHLQVSFSRLNVICRSLYNLYAPDKLTHRKNIDQTKLSDSSILAMLIWQT EIGIESQRRFCKFFVGLSHSRFNRRAKMLLPLIRCIRQAWNQEVKVAGEFLIIDSFPVPV CQPVRNYRVKIFRDIADIGYKATKKVYYYGFKVHALVSDEGYLLDYAVTKASVHDAKETV ELMINAHPINHYLLGDEGYLGKDLAAELKGMGYVLWTPYRKNMKGAKKHNNHQLMAIRRT IESDFSLLSYYNAENNRARSLAGFQQRLEIAILAYNMAYCLERFN Prediction of potential genes in microbial genomes Time: Wed May 25 06:55:27 2011 Seq name: gi|227861246|gb|ACKR01000220.1| Lactobacillus crispatus JV-V01 contig00244, whole genome shotgun sequence Length of sequence - 554 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 42 - 101 2.6 1 1 Tu 1 . + CDS 324 - 552 119 ## lhv_1039 transposase Predicted protein(s) >gi|227861246|gb|ACKR01000220.1| GENE 1 324 - 552 119 76 aa, chain + ## HITS:1 COG:no KEGG:lhv_1039 NR:ns ## KEGG: lhv_1039 # Name: not_defined # Def: transposase # Organism: L.helveticus # Pathway: not_defined # 1 76 74 149 259 162 100.0 5e-39 MNKKVDLNGQFLIIDSFPVPVCQPIRNYRAKIFRGYANIGYKATKKIYFYGFKVHAIVSD DGYILDYVVTKASVHD Prediction of potential genes in microbial genomes Time: Wed May 25 06:55:29 2011 Seq name: gi|227861244|gb|ACKR01000221.1| Lactobacillus crispatus JV-V01 contig00246, whole genome shotgun sequence Length of sequence - 310 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 309 223 ## LCRIS_01732 transposase Predicted protein(s) >gi|227861244|gb|ACKR01000221.1| GENE 1 3 - 309 223 102 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01732 NR:ns ## KEGG: LCRIS_01732 # Name: not_defined # Def: transposase # Organism: L.crispatus # Pathway: not_defined # 1 102 63 164 408 198 100.0 5e-50 TLQSFLEDYGYDYVILNPLKAKKEMDMGLRHNKTDKTDAYHLALIQRLYHHPINQLQSQT YKQLNALSRFYDQLTADLVMAKNRLHQALQSTFPEIENLFSS Prediction of potential genes in microbial genomes Time: Wed May 25 06:55:32 2011 Seq name: gi|227861242|gb|ACKR01000222.1| Lactobacillus crispatus JV-V01 contig00247, whole genome shotgun sequence Length of sequence - 217 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:55:35 2011 Seq name: gi|227861238|gb|ACKR01000223.1| Lactobacillus crispatus JV-V01 contig00248, whole genome shotgun sequence Length of sequence - 6457 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 6 - 78 86.4 # Val TAC 0 0 + TRNA 83 - 155 86.2 # Lys TTT 0 0 + TRNA 169 - 250 61.1 # Leu TAG 0 0 + TRNA 275 - 347 80.3 # Thr TGT 0 0 + TRNA 358 - 429 79.2 # Gly GCC 0 0 + TRNA 441 - 526 63.7 # Leu TAA 0 0 + TRNA 535 - 608 71.3 # Arg ACG 0 0 + TRNA 614 - 687 86.9 # Pro TGG 0 0 + TRNA 718 - 791 73.7 # Met CAT 0 0 + TRNA 805 - 878 86.9 # Met CAT 0 0 + TRNA 902 - 975 76.8 # Met CAT 0 0 + TRNA 979 - 1052 68.6 # Asp GTC 0 0 + TRNA 1059 - 1131 76.1 # Phe GAA 0 0 + TRNA 1150 - 1220 65.5 # Gly TCC 0 0 + TRNA 1227 - 1301 90.5 # Ile GAT 0 0 + TRNA 1304 - 1396 53.4 # Ser GCT 0 0 + TRNA 2150 - 2221 63.8 # Glu TTC 0 0 + TRNA 2255 - 2341 64.3 # Ser TGA 0 0 + TRNA 2353 - 2426 76.8 # Met CAT 0 0 + TRNA 2430 - 2503 68.6 # Asp GTC 0 0 + TRNA 2510 - 2585 78.8 # Phe GAA 0 0 + TRNA 2589 - 2670 63.7 # Tyr GTA 0 0 + TRNA 2675 - 2745 45.5 # Trp CCA 0 0 + TRNA 2758 - 2833 57.1 # His GTG 0 0 + TRNA 2838 - 2909 69.8 # Gln TTG 0 0 + TRNA 2933 - 3003 66.1 # Cys GCA 0 0 + TRNA 3045 - 3129 60.0 # Leu CAA 0 0 2 1 Op 2 4/0.000 + CDS 4430 - 5473 1052 ## COG0438 Glycosyltransferase 3 1 Op 3 . + CDS 5473 - 6457 641 ## COG0392 Predicted integral membrane protein Predicted protein(s) >gi|227861238|gb|ACKR01000223.1| GENE 1 3251 - 4429 1116 392 aa, chain + ## HITS:1 COG:SPy0516 KEGG:ns NR:ns ## COG: SPy0516 COG0438 # Protein_GI_number: 15674620 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 390 1 390 444 350 46.0 4e-96 MNIGLYTDTYFPQISGVATSIKTLKEALEKQGHNVFIFTTTDPNVKKGTVEPNVFRFSSI PFVSFTDRRIAFRGLFEATKVAKEVNLDIVHTQTEFALGTIGKYVAHQLDIPAIHTYHTM YEDYLHYILNGHLLRPYHVRQFVKSYLKNMDGCIAPSGRVEELLRRYGVQIPIRVIPTGV DLQGMNNDIQRDVRQELGIDQDAPVILTLSRIAAEKKINHILNVMPEIIDEFPNVKFVIA GDGPDVDVLKDQVERLTLENYVIFVGNVEHGDVGNYYRMADLFVSASDTETQGLTYIEAL AAGTPCVVYDTDYTENIFDQDIFGQTFTTQQEMLEEIITLLKQGTKRIPQELLQNKLQKI SADQFAKNVSDFYQYAIDHYQPKHDEETKKRN >gi|227861238|gb|ACKR01000223.1| GENE 2 4430 - 5473 1052 347 aa, chain + ## HITS:1 COG:SP1075 KEGG:ns NR:ns ## COG: SP1075 COG0438 # Protein_GI_number: 15900944 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 6 342 1 338 338 350 50.0 2e-96 MIRINMFSQADSVKGQGVGSAYNELIKLLRTHLVDEFYVTINKYGNSDLTHYHTINPTYY ANSFSPARGRKIGYVHFLPDTLEGSIKLPGVAKKVFYQYVIDFYKRMDQIVVVNPIFIDK LVNYGIDRNKVRYIPNFVSKTEFYEESLASKNAFRHELGIPLDKFVVFGDGQVQERKGID DFVKMAQANPDIQFIWAGGFSFGKITDGYDHYKEMVDNPPKNMTFAGIVEREKLVKYLNI ADLFVLPSYDELFPMSVLEAFSCGTPVLLRDLDLYKAIIDGYYLSGKDFGEMNQVLQKVV ANPQTLQKYSELSRKASQQYSEDHLAKIWDEFYHEQYELGKELGQIH >gi|227861238|gb|ACKR01000223.1| GENE 3 5473 - 6457 641 328 aa, chain + ## HITS:1 COG:lin2698 KEGG:ns NR:ns ## COG: lin2698 COG0392 # Protein_GI_number: 16801759 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 3 324 6 326 357 174 36.0 2e-43 MNKKHLWGILVVLAISAFVLYADLKATPISEILRAAHGLNIFALIMVFALMLLSYVCEAG ILATLAHRKKEPKRSAWSFLRIPIIQALFNAITPMSTGGQPSQLAAMIQMGMEGGRSTSI LLMKFIIYQIVVLFAYVFTIIFGFHMVMTKFAGLAIFIAIGFLIHVSSIIFLLAIMFAYR FTKKATNWLMDLLAKMMKKERVEKWRKATLEKIDTFYAESQKLKKEKKKLFVASLLTVLQ LLFFYSVPFMVLTALNVPCSWYQVTQMNIMIIMFMAIIPIPGASGGAEYSFQTLFSTFIS SHGALILAMFIWRFSTYFFGMLLGILGW Prediction of potential genes in microbial genomes Time: Wed May 25 06:55:37 2011 Seq name: gi|227861233|gb|ACKR01000224.1| Lactobacillus crispatus JV-V01 contig00249, whole genome shotgun sequence Length of sequence - 5581 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 22 - 81 7.2 1 1 Op 1 . + CDS 117 - 2177 1399 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily 2 1 Op 2 . + CDS 2260 - 2478 243 ## LCRIS_00448 preprotein translocase + Term 2487 - 2525 3.1 3 2 Op 1 10/0.000 + CDS 2551 - 4890 1356 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 4 2 Op 2 . + CDS 4903 - 5361 431 ## COG0691 tmRNA-binding protein + Term 5365 - 5400 4.4 Predicted protein(s) >gi|227861233|gb|ACKR01000224.1| GENE 1 117 - 2177 1399 686 aa, chain + ## HITS:1 COG:BS_yfnI KEGG:ns NR:ns ## COG: BS_yfnI COG1368 # Protein_GI_number: 16077793 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Bacillus subtilis # 11 653 18 653 653 595 50.0 1e-170 MEHTKSFFRWLTQTKLGFFTIVLVLFWLKTYFIYLTKFNLGAVGPMQQFLLLINPIPSGM LLLGIGLFFKGRKSYWIILVIDFLLTLWLFANILYYREFSNFLSFSIIKTSGSTSDNLGK SIAGITLASDFLAFADIAVIIVLLATKVIKMDVRPLKLKVNLLIEALAVSLMGLNLLMAQ NDRSGLLTRTFDNNYIVKYLGINEYAIYDGYKTAQTSAQMAKANVSDLKSVRNYLKENYV KPNPAYTGVAKGKNVLIIHLESFQQFLIGYKWKGKEVTPNLNKIYHQKETISFDNFFNQV GQGKTSDAEMMLENSLYGLQSGSAMSTYGTSNTFESAPAILHQQAGYTTAVMHGGAGSFW NRNNAYKSFGYQYFMPLSFYQNKPSYYIGYGLKDKIFFDQSIKYIERLPQPFYLKMITVT NHYPYNIDKKNQTIDKTNTGDETVDGYVQTAHYLDQAIGEFMRWMKKTGLDKKTLVVFYG DHYGISGNHHKASAELLKKDSFNDFDNLQFQRVPLMFHMKGLKGGINHTYGGEIDVLPTL LNLLGIKDKDTIQFGYDLLSKNAPQIVAQRNGDFITPEYSKVGSDYYDTKTGERIKPNKK LKEKLTAISNTVTTQLSLSDRVINGNLLRFYKPKGFTRVKPKDYDYNKAPSLKRLFDDPS KTSLWYQNHRKTTQKDFKTDAPELKK >gi|227861233|gb|ACKR01000224.1| GENE 2 2260 - 2478 243 72 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00448 NR:ns ## KEGG: LCRIS_00448 # Name: secG # Def: preprotein translocase # Organism: L.crispatus # Pathway: Protein export [PATH:lcr03060]; Bacterial secretion system [PATH:lcr03070] # 1 72 6 77 77 92 100.0 5e-18 MTLLIIVSILIVIATMMQPQKQQDALNALSGGAVFSGQTKKRGFEAFMEKVTSVLLVLFF VFAIILAYMSSK >gi|227861233|gb|ACKR01000224.1| GENE 3 2551 - 4890 1356 779 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 11 722 7 703 730 526 41 1e-149 MAQNEKILAGVLEIFRHNPQKQFRVDQIEREARRDRLGNFTELIKALSFLEHDKKIITDG KGQYQLAQENTEVEGEFRANDKGFGFVRLDDENADDVFVAADYTKYAVNGDRVKVKITAG GNPWNGKGPEGQVEEILEHGLETLVGEFHPLTDEQRKNSHFIGYALSNDKKLHKYRVYLS ENGLIPQMGDMVKVSIKDYPDEENPESMTGAVVNIIGNKNDPGVDIMSIVAAHDVRTEWP EDAMAQANAIPDHVTEEEKKGRVDITDQPAVTIDGDDSKDFDDAVVLWKKPNGNYHLGVH IADVSHYVTENTPLNEEAFARGNSTYLVDRVIPMLPFRLSNGICSLNEGVDRLVLSCDME ITPEGKRVGYKIYPSVMRSHGRMTYNKVNKTLKGEMNGLEDKYVKLRPMLEEMADLHAAL YKQRHQRGAIDFEEPEAKIIVDDQGKPTDIVLHERGTAEKMIESFMLMANETVAEDFFKK HVPFLYRVHETPDAERIKTFFEFCSAFGLNIHADPNNVKPIDLQKVVSKTTDTPEEAVVQ MMMLRSLKQAHYSEEALGHFGLAAEYYTHFTSPIRRYSDLMVHRMIHAYQDQGTNEEVQK HFASYLPDVAEQTSTQERRSIDTEREVNDLKMTEYMADQVGQHFDAVVSSVTSFGMFIQL PNTIEGLIHISNLTDDFYSFNEKALTLTGRGTHKQYKVGMPIKVTLINANVEQHQLDFEI YDPNAPKHKHNDRGMNNRRRGNRGFRNNHGRRGGQFNNHSDHGRGRGNGNRGGRRNFKH >gi|227861233|gb|ACKR01000224.1| GENE 4 4903 - 5361 431 152 aa, chain + ## HITS:1 COG:BH3552 KEGG:ns NR:ns ## COG: BH3552 COG0691 # Protein_GI_number: 15616114 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Bacillus halodurans # 4 148 6 150 157 167 60.0 5e-42 MKKEKEDNLIAQNKKARHDYFIKETLEAGIALTGTEIKSVRARRINLRDGYVQIVNGQAW LENVHISEYKQGNRYNHEPLRSRRLLLHKKEIARLAKAQSERGIAIIPLKVYLKHGFAKV LIGVGQGKKEYDKRQTIKERDQKRDIRRKYGV Prediction of potential genes in microbial genomes Time: Wed May 25 06:55:39 2011 Seq name: gi|227861231|gb|ACKR01000225.1| Lactobacillus crispatus JV-V01 contig00250, whole genome shotgun sequence Length of sequence - 279 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Wed May 25 06:55:53 2011 Seq name: gi|227861176|gb|ACKR01000226.1| Lactobacillus crispatus JV-V01 contig00251, whole genome shotgun sequence Length of sequence - 45366 bp Number of predicted genes - 52, with homology - 51 Number of transcription units - 23, operones - 14 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 7 - 66 6.8 1 1 Tu 1 . + CDS 124 - 300 96 ## LCRIS_01861 hypothetical protein + Prom 304 - 363 5.3 2 2 Tu 1 . + CDS 428 - 1051 758 ## COG1309 Transcriptional regulator + Term 1082 - 1133 6.2 + Prom 1118 - 1177 7.1 3 3 Op 1 1/0.000 + CDS 1204 - 1743 710 ## COG0431 Predicted flavoprotein 4 3 Op 2 . + CDS 1757 - 2305 692 ## COG0431 Predicted flavoprotein + Term 2339 - 2371 3.2 + Prom 2316 - 2375 2.9 5 4 Op 1 . + CDS 2397 - 3188 644 ## COG2365 Protein tyrosine/serine phosphatase 6 4 Op 2 . + CDS 3191 - 4120 1140 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis - Term 4473 - 4534 12.1 7 5 Tu 1 . - CDS 4539 - 5075 578 ## LCRIS_01854 membrane anchor connecting MutS2 with cell-division Z-ring - Prom 5271 - 5330 11.9 + Prom 5014 - 5073 5.9 8 6 Op 1 4/0.000 + CDS 5237 - 5959 734 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 9 6 Op 2 25/0.000 + CDS 5977 - 6813 994 ## COG1475 Predicted transcriptional regulators 10 6 Op 3 25/0.000 + CDS 6832 - 7611 740 ## COG1192 ATPases involved in chromosome partitioning 11 6 Op 4 1/0.000 + CDS 7589 - 8476 974 ## COG1475 Predicted transcriptional regulators 12 6 Op 5 4/0.000 + CDS 8469 - 8732 225 ## COG4481 Uncharacterized protein conserved in bacteria 13 6 Op 6 . + CDS 8786 - 9886 1443 ## COG0012 Predicted GTPase, probable translation factor 14 6 Op 7 . + CDS 9895 - 10680 835 ## COG4858 Uncharacterized membrane-bound protein conserved in bacteria + Term 10757 - 10793 -0.4 + Prom 10688 - 10747 6.5 15 7 Op 1 35/0.000 + CDS 10827 - 11744 1092 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 16 7 Op 2 35/0.000 + CDS 11741 - 12538 217 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 17 7 Op 3 . + CDS 12662 - 14413 1795 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 14491 - 14549 12.4 + Prom 14522 - 14581 8.4 18 8 Op 1 40/0.000 + CDS 14665 - 15351 834 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 19 8 Op 2 . + CDS 15353 - 16507 963 ## COG0642 Signal transduction histidine kinase 20 8 Op 3 . + CDS 16560 - 18131 1638 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 21 8 Op 4 . + CDS 18171 - 18890 651 ## COG1794 Aspartate racemase + Term 18911 - 18939 -0.1 + Prom 18925 - 18984 5.6 22 9 Tu 1 . + CDS 19032 - 19355 436 ## LCRIS_01835 putative protein without homology + Term 19370 - 19415 3.5 + Prom 19378 - 19437 5.3 23 10 Op 1 . + CDS 19504 - 19728 222 ## LCRIS_01834 hypothetical protein 24 10 Op 2 . + CDS 19804 - 19995 126 ## LCRIS_01833 putative protein without homology 25 10 Op 3 . + CDS 20010 - 20195 281 ## LCRIS_01832 hypothetical protein + Term 20257 - 20305 2.1 + Prom 20199 - 20258 11.1 26 11 Tu 1 . + CDS 20403 - 21806 1536 ## COG0277 FAD/FMN-containing dehydrogenases + Term 21809 - 21851 5.5 + Prom 21863 - 21922 5.2 27 12 Tu 1 . + CDS 21953 - 24259 2326 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases + Term 24272 - 24314 6.9 + Prom 24461 - 24520 7.2 28 13 Tu 1 . + CDS 24574 - 25971 1031 ## COG1672 Predicted ATPase (AAA+ superfamily) + Prom 25989 - 26048 6.1 29 14 Op 1 9/0.000 + CDS 26208 - 27536 797 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 30 14 Op 2 . + CDS 27529 - 28329 674 ## COG3279 Response regulator of the LytR/AlgR family + Term 28354 - 28400 7.1 + Prom 28370 - 28429 6.1 31 15 Op 1 . + CDS 28453 - 30615 241 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 32 15 Op 2 . + CDS 30626 - 31222 497 ## LBA1794 gassericin K7 B accessory protein + Prom 31291 - 31350 3.9 33 16 Op 1 . + CDS 31377 - 32681 1311 ## LBA1793 hypothetical protein 34 16 Op 2 . + CDS 32682 - 32879 302 ## LBA1792 hypothetical protein + Term 32991 - 33039 -0.7 + Prom 33369 - 33428 6.9 35 17 Op 1 . + CDS 33472 - 33723 324 ## gi|227879211|ref|ZP_03997083.1| conserved hypothetical protein 36 17 Op 2 . + CDS 33741 - 33935 282 ## gi|227879212|ref|ZP_03997084.1| hypothetical protein HMPREF0506_2085 37 17 Op 3 . + CDS 34005 - 34220 135 ## LCRIS_01817 putative protein without homology + Term 34240 - 34283 7.1 38 18 Tu 1 . - CDS 34252 - 34551 59 ## + Prom 34269 - 34328 12.2 39 19 Op 1 . + CDS 34388 - 34570 228 ## LBA1790 hypothetical protein 40 19 Op 2 . + CDS 34575 - 35114 376 ## LBA1789 hypothetical protein 41 19 Op 3 . + CDS 35129 - 35338 200 ## PROTEIN SUPPORTED gi|163756262|ref|ZP_02163377.1| 50S ribosomal protein L20 + Prom 35357 - 35416 5.9 42 20 Op 1 . + CDS 35471 - 35662 263 ## LBA1787 hypothetical protein 43 20 Op 2 . + CDS 35689 - 36111 382 ## LCRIS_01812 hypothetical protein 44 20 Op 3 9/0.000 + CDS 36129 - 37025 596 ## COG4152 ABC-type uncharacterized transport system, ATPase component 45 20 Op 4 . + CDS 37018 - 38232 948 ## COG1668 ABC-type Na+ efflux pump, permease component + Term 38250 - 38301 16.0 + Prom 38406 - 38465 8.3 46 21 Op 1 10/0.000 + CDS 38540 - 39295 889 ## COG1349 Transcriptional regulators of sugar metabolism 47 21 Op 2 19/0.000 + CDS 39297 - 40211 1232 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 48 21 Op 3 . + CDS 40232 - 42229 2600 ## COG1299 Phosphotransferase system, fructose-specific IIC component + Term 42370 - 42400 4.3 + Prom 42365 - 42424 10.0 49 22 Tu 1 . + CDS 42480 - 42725 183 ## LCRIS_01804 transcriptional regulator, ArsR family + Term 42825 - 42870 5.1 + Prom 42741 - 42800 8.4 50 23 Op 1 25/0.000 + CDS 42978 - 43874 1002 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin 51 23 Op 2 42/0.000 + CDS 43928 - 44548 231 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 52 23 Op 3 . + CDS 44548 - 45342 887 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components Predicted protein(s) >gi|227861176|gb|ACKR01000226.1| GENE 1 124 - 300 96 58 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01861 NR:ns ## KEGG: LCRIS_01861 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 58 23 80 80 105 100.0 4e-22 MKFSDNLTDDRERGYILSAAFFSFCAAQGLDKQAVIEMASSHYDQFTGDNGSSLFKRL >gi|227861176|gb|ACKR01000226.1| GENE 2 428 - 1051 758 207 aa, chain + ## HITS:1 COG:FN1004 KEGG:ns NR:ns ## COG: FN1004 COG1309 # Protein_GI_number: 19704339 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Fusobacterium nucleatum # 1 156 1 154 188 65 25.0 9e-11 MARKKEISKDKILDTAYKMAIKDGIEGLTARGIAKAGHFSTQPLYLEFNNMDDLRNQVLR RISNDLRTHTLQQKYVGEPLIDLDLSYIDFAQAHVNLFRAMFVDGKFGSKIIADTLMELG TEKFKEQYPDVDYDDQKIHDIVIANWISTTGMAALIVNEIASFSQTQIVNVLNAQIHDAM LNNRLSETQENPMFAADEEASLKDNLA >gi|227861176|gb|ACKR01000226.1| GENE 3 1204 - 1743 710 179 aa, chain + ## HITS:1 COG:SP1472_1 KEGG:ns NR:ns ## COG: SP1472_1 COG0431 # Protein_GI_number: 15901322 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 179 1 181 187 148 41.0 4e-36 MKVLALSGSNADNSFNEKLLKVIIKDLGDKYDFDFATVKGLPMYKEGVDAPASVLALGKK IADADMVLIASPEQQHSVSSALKSALEWLSSSVHPFHDKPVVIVSTSPMPQGASRSQTRL KSILGAPGFSAHVFAGDEFMMGLAPKQFDDKGDLTDAGTLKFLNHFFDEVDDWYAQLTK >gi|227861176|gb|ACKR01000226.1| GENE 4 1757 - 2305 692 182 aa, chain + ## HITS:1 COG:SP1472_1 KEGG:ns NR:ns ## COG: SP1472_1 COG0431 # Protein_GI_number: 15901322 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 182 1 181 187 135 41.0 5e-32 MKILAIVGTNAPFSFNRFLAKFIAKRYGEQADIEVKEIDQLKPFCRTDEPDDVTKKWIED VKNADGVILATPEYDHSIPAALKSALEWLGSHAGPNVMKMKPAAVVGTSYGIQGSSRAQE DAREILLSPDMSANVLPGNEILIGGAASNFDKETGDLTNEDYIKQLDAMMANFIKFVEQA NK >gi|227861176|gb|ACKR01000226.1| GENE 5 2397 - 3188 644 263 aa, chain + ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 6 260 46 297 298 137 31.0 2e-32 MKPNILPLEKVCNPRDLGGYVGYQGRKVKMHRLLRTGKISNITRHDQEFLLNYGLTKIID LRSPTECDHCPDSKIPGVEHFCIPISVDDNTKGGKKDLTQVFATYRQDQYAGFRMMCERY KSHVLKEHAQHSLHKILELLANTEKGAVLYHCSEGKDRTGLVTVVLLYLLGVDMETIRQD YLYSNYMLNNYRAKRDKKMQEEGENLCFRANMRILGSVSDAFLDTSLIAIEQNFGSFDNF LQEKIGVTTELREALRDLYLEEK >gi|227861176|gb|ACKR01000226.1| GENE 6 3191 - 4120 1140 309 aa, chain + ## HITS:1 COG:L171943 KEGG:ns NR:ns ## COG: L171943 COG1477 # Protein_GI_number: 15672350 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Lactococcus lactis # 14 303 16 306 325 328 53.0 9e-90 MIKDLALEQVVGDHHALGTSITLQIFGTQNRDLLQKSFDLIDHYEDIFTVNRDESEVMDI NHAAGEHPVQVSSAVYGLVKLAVEKSRENFGFNALIGPVVKLWHIGFKGAHVPKDEEIKD RMLLTDPFKVVLNDSDQSVFLKMKGMELDLGGIAKGWIADRIRDLWRAYGVEAGIINLGG NILLVGDSPKRISGQWSIGVQDPKQPRGDNITSVMVPECSAVTSGTYERYLVVNGKKYHH LIDPRTGYPVKTDLAGVTTFTKTSVEAEIECKRLFFAGKPLKGWHDNPDRIGAIFVYNDE HIEYDNFGD >gi|227861176|gb|ACKR01000226.1| GENE 7 4539 - 5075 578 178 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01854 NR:ns ## KEGG: LCRIS_01854 # Name: not_defined # Def: membrane anchor connecting MutS2 with cell-division Z-ring # Organism: L.crispatus # Pathway: not_defined # 1 178 1 178 178 286 100.0 2e-76 MIVTLIVLAYLAYKTYLGYKTGFTRYIIGLICSAIVFMVAIFMQNPFGNWLYTQYTGEMI KTNSTNNVELMIARFVAFFIVFFVGKMIMKIVKSWIPNKNPHATNLGSILDNVLGALASL IASYFVVYVVLSMFNALQNPWFMQQTIDSSFLRFIIYNTPGLSNGVFNNIFNIGKTVG >gi|227861176|gb|ACKR01000226.1| GENE 8 5237 - 5959 734 240 aa, chain + ## HITS:1 COG:lin2934 KEGG:ns NR:ns ## COG: lin2934 COG0357 # Protein_GI_number: 16801993 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Listeria innocua # 1 239 1 237 238 258 56.0 5e-69 MNPEKFILELSKHNFKLTDQQIEQFKIYFNYLIEVNEHVNLTRITEEDEVYLKHFYDSIT PLFTFGDVFKDGATLCDVGAGAGFPSIPLKILQPELKITIVDSLAKRLTFLKNLITKLDL KDVELVHGRAEDVGQNKLYREKFDLVTARAVARMSVLSEYCLPLVKKDGYFIALKGPKAE DELDDGQKALELLGGKLIKEEELTLPESEEERTLILVQKVKATPKKYPRQAGTPRRKPIH >gi|227861176|gb|ACKR01000226.1| GENE 9 5977 - 6813 994 278 aa, chain + ## HITS:1 COG:BS_yyaA KEGG:ns NR:ns ## COG: BS_yyaA COG1475 # Protein_GI_number: 16081151 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 17 277 28 283 283 215 48.0 6e-56 MSLFSFMHHDDEIPKNKQVQDLELSKIVPNRYQPRREFSDDSIKELAETLDKDGLLQPIV VREDGDDEQYEIIAGERRYRAAKSLGWQTIPAIVKNMSDDQAASLALIENLQREDLNPID EAKAYTNLMELNDLTQTALAKNMGKSQSYVANKLRLLKLDDNVQQALIAGKITARHGRAM IGLSNADQDRVLTEIEAKGLNVKQTEEIVKDVDAYFNPKPKAKKEAKRVVSRVPKDLKVQ INTIKKAVKLAEDSGIKVKVTENKDPDDYKITIELKRK >gi|227861176|gb|ACKR01000226.1| GENE 10 6832 - 7611 740 259 aa, chain + ## HITS:1 COG:BH4058 KEGG:ns NR:ns ## COG: BH4058 COG1192 # Protein_GI_number: 15616620 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 1 250 1 250 253 339 67.0 3e-93 MVNVISVANQKGGVGKTTTTINLAASIADRGYRVLIVDIDPQGNATSGLGIEKSEIDQDI YNVLIDEIPIQDTIHHTSTPKLDMVPATINLSGAETELISMMARETRLKSALDAISDQYD FVFIDCPPSLGQLSINAFTASDSILIPVQSEYYAMEGLSQLLNTIRLVQKHFNKDLGVEG VLLTMLDARTNLGAEVVKEVQSYFSKKVYKTIIPRITKLAEAPSYGQPITEYAPKSRGAK VYDDLAKEVLKAHDKRLKK >gi|227861176|gb|ACKR01000226.1| GENE 11 7589 - 8476 974 295 aa, chain + ## HITS:1 COG:BS_spo0J KEGG:ns NR:ns ## COG: BS_spo0J COG1475 # Protein_GI_number: 16081148 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 15 289 4 277 282 259 54.0 4e-69 MTRDSRSKEPRKKGGLGRGLEALFEDEPQVQEAEEVQELDLGDIRPNPYQPRKRFDDKSL KELSDSIKENGVFQPIIVRESVNGYEIIAGERRFRASKLAKKKTIPAIIRKFNESQMMEV AVLENLQREDLTPLEEAQAYEMLQKNLGLTQEEVSKRMGKSRPYIANYLRLLTLPSKTKR LLQHGELSMGQARTLLSLKDKEKIDALAKRVVKEGMPVRKVEAVVNELNAKKPRSKKTAK KSAFIRASESQLANKFGSSVNISETQKGKGHLSIDFASTEELNRILDLLGVDLDG >gi|227861176|gb|ACKR01000226.1| GENE 12 8469 - 8732 225 87 aa, chain + ## HITS:1 COG:BH4052 KEGG:ns NR:ns ## COG: BH4052 COG4481 # Protein_GI_number: 15616614 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 66 1 64 65 81 56.0 4e-16 MAKEIVYNLADTVQMKKPHACQTNDWKILRMGADIKLKCMGCGHIVMMPRSEFNRKLKKL LTKANDPVNAKKEQYVPKDRIARPNFG >gi|227861176|gb|ACKR01000226.1| GENE 13 8786 - 9886 1443 366 aa, chain + ## HITS:1 COG:SP0004 KEGG:ns NR:ns ## COG: SP0004 COG0012 # Protein_GI_number: 15899953 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Streptococcus pneumoniae TIGR4 # 1 366 1 371 371 455 65.0 1e-128 MSLTAGIVGLPNVGKSTLFNAITKAGAEMANYPFATIEPNVGMVEVPDKRLARIQELIPA KKIVHTTFEFTDIAGLVKGASKGEGLGNKFLENIRQTDAIVHVVRAFDDDNITSVTGKVD PEEDINTINLELAIADLDAVNRRINKVKKVAQQGDKEAKAEMAVLNKLQPVLEEGNAARS IDFNEDEQKIVKGLFLLTSKPVIYVANIAEDSMADPESDKYYQIVKKHAESEGAECLGIS AATEEEIAGMADDEKKEFLEMEGVEESGLDRLIRAAYHILGLRTFFTAGGPETRAWTFHK GMKAPQVAGVIHSDFERGFIRAEVVSFDDLDKLETMQKVKEAGKLRLEGKDYEVQDGDII EFRFNV >gi|227861176|gb|ACKR01000226.1| GENE 14 9895 - 10680 835 261 aa, chain + ## HITS:1 COG:L196216 KEGG:ns NR:ns ## COG: L196216 COG4858 # Protein_GI_number: 15672175 # Func_class: S Function unknown # Function: Uncharacterized membrane-bound protein conserved in bacteria # Organism: Lactococcus lactis # 43 259 4 219 219 58 25.0 1e-08 MAEETKREQDQTKINTEKQAKLKKQAELDTQDEKIKQEDPKALREKLSNKNSDYVFRLEK ELQKQGSMSRADAVAMTNGLLSEIIIAQRHGQPANGLYLASPAIKAEQMLHPKKKPVATP TWQLMVDGALLYLAIFVGLCGILALFQTKNQPYNSQMGILTIASVGILMGIFMVKYNDWL MPQQGKRPSLVKLILRMLAIAVVLFVWMWILQIPALRVINPVLPAVADIVIAAAAYGVRY LFRKHYNIVGSAFAPRPQQHK >gi|227861176|gb|ACKR01000226.1| GENE 15 10827 - 11744 1092 305 aa, chain + ## HITS:1 COG:CAC3414 KEGG:ns NR:ns ## COG: CAC3414 COG1132 # Protein_GI_number: 15896655 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Clostridium acetobutylicum # 1 305 1 305 577 257 42.0 2e-68 MIKTLSKSIRQYKKLSLLSPMFVIGEVIIEMLIPYLVGILIDNGIMKGDMSYISKMGLLL LVLTVISLILGASASYVSAHAAAGFAANLRQDMFYHMQDYSFENIDHFSSASLVTRLTTD VNNVQMAYQMIIRIAVRAPMMFIVLIIMSIIISPRLSLIFAVLGPVFAIALGLIIKTAYP YFPKIFRGYDRMNQVVRENVRGIREVKTYVQEQPQIKEFKKSSGFIYKLFATAQKIMSLN ALVVAAVLNISTLSICWFGAKEVVGGSLQTGQLISMFTYSNSVLFSLNILAMITTQLVIS GASGQ >gi|227861176|gb|ACKR01000226.1| GENE 16 11741 - 12538 217 265 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 40 246 37 249 329 88 30 8e-17 MITEEPTIEDPKKPLKRLTNGEIIFDHVSFKYEPADKADALKDINLHIRPGETIGIIGET GSSKSTLVSMIPRLYDVTSGAVRVAGHNVKSYDLKTLRDNVAMVLQKNVLFTGTIKDNLK WGNENATDEQVIAAAKIAHADGFIREMPDGYDTMVEQGGNNVSGGQKQRITIARALLKNP KILILDDSTSAVDTSTERQIRTSLAKDMPETTKIIISQRIVSIKDADRIIVMDHGQIQAI GTHDELMKTNELYSSIAKFQEEQGK >gi|227861176|gb|ACKR01000226.1| GENE 17 12662 - 14413 1795 583 aa, chain + ## HITS:1 COG:CAC3415 KEGG:ns NR:ns ## COG: CAC3415 COG1132 # Protein_GI_number: 15896656 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Clostridium acetobutylicum # 1 582 35 626 627 603 52.0 1e-172 MITIVLAAASNVIGSLFIERLINNYIVPLTKEKVPNYGPLATAIAVMFGIYAIGFLSNYL FNMLMGVLAQKVQYRVRNEMFVHMESLPISYFDQNEFGDIMSRYTNDIDTLMQMISQSIP QFTNSALSLLFVVVAMFSLSWQLTVFSFIIFALSFGIVRYLTVRSSHFFQVQQKKLGQIN GYNEEMLNGLKVIKVFSHEPQSKEGFDKYNDELRQASGKANTYATILFPIMGNMGNLLYV LIAFVVGAAAINSWAPLSLGAIGSFLQLSKQFSMPIAQISQQLNSIVMALAGAERIFNLE DQKSEADQGTVTLSKKNDEVGSKWYWNVPQKDGSTKKVQVRGHIIFDHVNFSYVPDHQIL HDISINAKPGMKVALVGETGAGKTTISNMLNRFYDIDSGTITYDGIPIKNIKKDDLRKSL SIVLQETHLFTGTIMDNIRFGNPDASDDDVYQAAKLSHADEFIHDLDHGYETVIDGDGGD LSQGQIQLLSIARAMIADEPVMILDEATSSIDTRTEKMVQAGMDNLLTGRTSFVIAHRLS TIVNSDLILVLDHGHIIEHGNHDELIKQKGYYYELYTGKKEIQ >gi|227861176|gb|ACKR01000226.1| GENE 18 14665 - 15351 834 228 aa, chain + ## HITS:1 COG:lin2516 KEGG:ns NR:ns ## COG: lin2516 COG0745 # Protein_GI_number: 16801578 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 227 5 230 231 219 50.0 4e-57 MKILVVDDDKEIVELLSIYLKNEGYEPVAAYSGKEAITKLTTTPDIVLMILDVMMPNMSG IDVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ KQVKNEKPDILEVGPLVINRDSHEVKTIDGKTIQLTALEFGILYLLASHPNRVFSADEIF ERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVEA >gi|227861176|gb|ACKR01000226.1| GENE 19 15353 - 16507 963 384 aa, chain + ## HITS:1 COG:CAC0565 KEGG:ns NR:ns ## COG: CAC0565 COG0642 # Protein_GI_number: 15893855 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 109 373 233 497 499 181 42.0 2e-45 MKKERVKLTGAEKSELFAEGVVTVVLLFLLNLSIIILIHLAILQDESLVNGIYFLKKTIT FAGGYHLWSWQNVFIVLMGVGDLVVLYWRLIRRYHQMQLRHIILELHYIANGHFDHRINF RVRPELQRVVDSINSLVDSTVNSINEERAIEQSKDELITNVSHDIRTPLTSIIGYLGLLK AGVTSPEDQKKYVNIAYTKAEQMKALANDLFEYTTLKSTNTKLNLNDLHIYSMLEQVAAG FELEAEKNGIEIEIEARPKNLTIKADAEKLVRVYNNLISNAFKYGTGATKIKLVANLVNK REVELRVENNGAPIPKKSLNKIFERFYRVETSRNTKTGGTGLGLSITKGVVDLHHGTIRC ESNEKWTSFIIRLPLDPKKASPTH >gi|227861176|gb|ACKR01000226.1| GENE 20 16560 - 18131 1638 523 aa, chain + ## HITS:1 COG:L53929 KEGG:ns NR:ns ## COG: L53929 COG0769 # Protein_GI_number: 15673788 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 32 511 37 483 483 328 41.0 2e-89 MSISLNTCILILKEHHLLKSSAVQDTVATKMDYVSYDSRDIQTNTLFFCKGAGFRPTYLS MAKDNGAICYVAEQPYPEGKGMHALIVRDVSKAMALLSAAFFRFPQDDLFVVAFTGTKGK TTSAYFLKGMLDQANGGKTALISSVNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNG MTHLVMEVSSQAYKKNRVFGLTYDLGFFLNISPDHIGPNEHPNFADYLHCKLQLLVNSRK CIINAETAHFDEVYAAATTTTNPDSIYLFARDNFENPDLKQPIDFRFSSEQLDMKETRFN LVCASDKARKLPINGDYTLKMLGDFNESNGTAAIIGAGLAGLNHDQCAKGIRDVTIPGRM QTERTKKHGMVVVDYAHNKASMMALMRFMRNEFNDPKIIVVVGAPGDKGVSRRPGFSESL TAYADKAFLTTDDPGFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMATPDDVV LICGKGADAFQKIRGVNTPYPSDIVVAQQVINELEGQEEHFRK >gi|227861176|gb|ACKR01000226.1| GENE 21 18171 - 18890 651 239 aa, chain + ## HITS:1 COG:L92665 KEGG:ns NR:ns ## COG: L92665 COG1794 # Protein_GI_number: 15674208 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Aspartate racemase # Organism: Lactococcus lactis # 1 210 11 221 240 176 43.0 3e-44 MGTIATESYVRLINHRVKIAKDQDYLNYILVNDAQIPDRTAYIKDHTKPNFFYDLRDDVL GQAKLGPDFYVMPCNTAHYFYDDLAALTDIPFLHMMRIAVHQFIEKYPQEKKIGLIATEG SIYDHLYVDEIHAVHREAELGGPEIQPMVNKLIYSDIKEKGMVDGKLYHQILQKMHDDYG CNVILLGCTELSLAQEKAPDHPYNVIDPQSIIADVSIELALKIRNGMDSKKACAKYMYK >gi|227861176|gb|ACKR01000226.1| GENE 22 19032 - 19355 436 107 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01835 NR:ns ## KEGG: LCRIS_01835 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 107 1 107 107 183 99.0 2e-45 MYQENKDDLKQWLLSNITDLLVNEDTKPEERKILLDAKHELENGESANYVCNLIRVGLDP LSWQGKLSHDVMKFHYAITSYARPVSAKAGACGGAALGMAFSGLMGK >gi|227861176|gb|ACKR01000226.1| GENE 23 19504 - 19728 222 74 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01834 NR:ns ## KEGG: LCRIS_01834 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 74 1 74 74 122 100.0 5e-27 MNNKNSKPKFSGLNMLISILIGWAIFFFGAWACMKFSSEFFAMPRFIAVIIVSIAGAVVI GPAIYGFLYLGRKK >gi|227861176|gb|ACKR01000226.1| GENE 24 19804 - 19995 126 63 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01833 NR:ns ## KEGG: LCRIS_01833 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 63 1 63 63 107 100.0 1e-22 MLVMKIIFNVLIAYLVICTVISIIRTVGAKREEWHVYNGQGMSFNQAFVRYFIEDATLGQ VTI >gi|227861176|gb|ACKR01000226.1| GENE 25 20010 - 20195 281 61 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01832 NR:ns ## KEGG: LCRIS_01832 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 61 1 61 61 98 100.0 7e-20 MLYLVYILIGMLIVLGVNLLITAFWALHDMYVKKENADLPTFKKYFVKNNNIPTKMSDLF N >gi|227861176|gb|ACKR01000226.1| GENE 26 20403 - 21806 1536 467 aa, chain + ## HITS:1 COG:CAC2542 KEGG:ns NR:ns ## COG: CAC2542 COG0277 # Protein_GI_number: 15895804 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Clostridium acetobutylicum # 2 463 4 465 467 399 42.0 1e-111 MDFKKLTATDIDNLSKFISDPERFITKPTVHWDHDQFKTVRAMPYLVIQPETNEEVENVV KYASDHHIPIVPRGNSTGLMGGNLTVEGGISLDMVKMNKVLEYEPESLTMTVQAGIRLKD IEEYLANKPFTYMPAPAMHWATIGGNVDTNAGGLKAIKYGVTREHIRELKVVLTDGKLYK FGAKAVKSSSGYSLKDLIIGSEGTLGVVTEVTMRLYPRPKQSINAIIPFPNLDKAIKSVP AILASGVVPTTVEFMGRKVISLWEKYYDEKFPIANGDGFIILGLDSLTKEELDAELKLAL AATKKFKAADAVILDANSEEAKKIWTCREALLLAIQKSTPKMDEVDICVPINHIPDVLHR VDELEQEVGMRIPNFGHAGDGNLHIYLCSDAMSDEEFEQKSHYVITELYKTAKALDGNMS GEHGIGYACKDWFEDFYGHDYTELLRKIKHVFDPNYVLNPDKIFPME >gi|227861176|gb|ACKR01000226.1| GENE 27 21953 - 24259 2326 768 aa, chain + ## HITS:1 COG:alr4773 KEGG:ns NR:ns ## COG: alr4773 COG1501 # Protein_GI_number: 17232265 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Nostoc sp. PCC 7120 # 26 751 42 759 779 545 37.0 1e-155 MINQLTDFTKDGQKITLNYENGPMILTVLTPEIMRFFQDRGNASNSYAIEGDKEIKTDFT VKNKGDHIEIATAKLIVKAYDDEKIDVFDEQGNPLVVDYRGKRTPIDRQMDEEHLKLAES EGHDVDKLLGKHDADYYEVVKSLADDEEFYGLGDKTGYLNKRHYAYDNWNTDNPDPQVES FTRLYKSIPILLGLKNGHPYGIFFDNTYRNHIDLGKESNDYYYYSAVDGNIDYYIIGGDS LKEVITNYTYLTGRVPMPQKWTLGYQQSRWGYSVSQKQVEKIAENLRKYDLPCDVLHLDI DYMRGYRVFTWRKDNYESPEKFVAKMRKLGFRIITIIDPGVKKDDDYKIYKEGIEKGYFV KAPDGTVYVNQVWPGDSVFPDFGRKEVRKWWAKNCKYLVDLGVSGIWDDMNEPASFKGEI PQNIVFHNEEEASTHKKMHNVYGHNMAKATYEGLKKFSGKRPFVITRAAYAGTQKFSTVW TGDNQSLWTHVQMMIPQLCNLGMSGFSFAGTDIGGFGADTTPELLTRWIEGALFSPLYRN HAALGTRSQEPWIFGEPTLSIYRKYLKLRYRFIPYLYDEFYRETKTGLPIMRPLVLNYEN DPQVYNLNDEYMVGEDILAAPVVQEGQTKRAVYLPKGKWIDFWNGVEHAGKTTILVDAPI GKLPLFIKKNTILPWGKEVSHISGEPDESMTFRLFGKKGKYVHYQDNGTDFKYQKGEYNL YKVKVNKDGSVKVKLEKHGFGPVYRRITVQLPNKKIEFKYKNGEYVRK >gi|227861176|gb|ACKR01000226.1| GENE 28 24574 - 25971 1031 465 aa, chain + ## HITS:1 COG:PAB1516 KEGG:ns NR:ns ## COG: PAB1516 COG1672 # Protein_GI_number: 14521501 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Pyrococcus abyssi # 1 428 1 418 469 258 36.0 1e-68 MFVGRHQELEQLNQAYQENDFQFTVIYGRRRIGKTSLINEFLKDKKSIYYVALEENAEDN LKRFSDAISIFKNTDQGGKEKFANFEECFKEITHLAQKQRVILVIDEFPYLAKAYPTISS MLQSYIDHEFKETNLFLILCGSSMSFMERQVLGYQSPLYGRRTLALKLEPFKLSEAHEML PKLSKEDAFIINTVCGGVPQYLSYMSDSMSVADNIKKNFLSKSGRLFDEPNNLLQQELRD PTNYNSIINAIASGASKHSKIAQSAHLQTGPLTTYLNNLIDLGIVEKKLPVTEQKKSKSK NIVYRICDGMFRFWYTFVGKQTDLIERGLTDLAWVKVQKGLSDFMGPEFEKYSQDFMWSQ DMNEKIVPNPFIHLGNWWGTDKRTHQQVELDIVGFSDDERDGYFGECKWKNEPISRSVLE KLITNSEIFKYPLKHYYLFSKSGFTDSCQELAKKINCQLFTFEEI >gi|227861176|gb|ACKR01000226.1| GENE 29 26208 - 27536 797 442 aa, chain + ## HITS:1 COG:CAC0080 KEGG:ns NR:ns ## COG: CAC0080 COG2972 # Protein_GI_number: 15893376 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Clostridium acetobutylicum # 161 427 180 430 447 87 29.0 7e-17 MEKIVLFLFLNVFSSLADVWCFFKISRVRSKKRQILFLCIANIFLGLLLSIGNIGVIFTN ILETLLFVLYLRKNNTLEILFGSIILVCTLDLLVDIVSDMITQVMSFTLIGQLSLRFLLI LMMIVAIKLGNGKIYNYLANQNNKIFVGILAYTYVSTVSISIIYIQSKSFTPLTLFFSLY ILIQTIFAIFIYHEMTMVQEKLLNKKDQEKLKQQQHQLEEYASYLEKSEDDLRAFRHDYK NILNSLKVSAQEGNVQEVIQKLDKYTETNLNSKALLKYKDLNHIYVKSIKSIIIPKITEL YNLDIPYNFECRNNIRNLPDHVDELDLVRIIGITFDNAIEESKALIAEKHDIRSAEVQIM VYSDDPDEFEFEIRNKIQNKNISTSQIQQRGFTTKKDHKGLGLANIKEIESKYPDMSISY TIQDGWFDFYMTIDTEDGEEDE >gi|227861176|gb|ACKR01000226.1| GENE 30 27529 - 28329 674 266 aa, chain + ## HITS:1 COG:SPy0245 KEGG:ns NR:ns ## COG: SPy0245 COG3279 # Protein_GI_number: 15674427 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Streptococcus pyogenes M1 GAS # 67 247 56 232 246 106 32.0 5e-23 MSKFPIIVCDDDKDLANQMAKNINASIQDLIDDNEGYAELNESVTFVANDFAQAVGYIVT NDIKNGIYFLDIELSRESKAKNGVDLAEFIKKNDENAQIIFVTAYDKYAPLTYRRRIGAI DYISKSMSSDKIIQRIEETLRNAFDNLSNRIKFSQRDFTYKIGRRVCKVAEGDILFIEHS TTQHKVHMVTENGEVEYKANITQIDKENPFLAKVSQSSLVNPKNISAIDTKERIIIFDNG QMVTYSRSYKAVVKKLVDKFENIKVE >gi|227861176|gb|ACKR01000226.1| GENE 31 28453 - 30615 241 720 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 486 710 12 233 312 97 30 1e-19 MLLQYKSIYVPQVDESDCGVACLAMILKKYHSRVFLAHLRHSARTNLEGTTALGLVKTAQ AFNLKTEAVKADMSLFDPDADIQYPFIVHVLKQGELLHYYVVIKATKNYLVIADPDPSVG LTKMSKEKFSQEWTGIALFMVPNDDFEPLKEKKQNLWSLFPYMFKQKKLVTNIILAALLM TIISICSSYFLQGLIDTYIPSGTYQTLSILAIGLLIAYVFNSIFSYGQNFLLDVLGQRLS IDLNLQYIRHIFELPMEFFVTRRTGEITSRFSDASRIIDALASTVISLFLDLSIVIVMGI VLAIQNSTLFVITLLSLPIYAVVILSFSKKFEKMNNDQMESNAVLSSSVIEDIQGIETIK ALNSEQTRYRKIDSQFVDYLKKSFRYSKTESLQSALKTFIQLSLNVIILWVGAKVVMNGQ MSIGQLMTFNALLSYFVDPLQSIINLQPTLQSANVAQNRLNEVYMVKSEFQKDAQIRDAK QLAGEIEYHHVDYHYGYGVDVLKDINLKIEPNDKLAIVGMSGSGKSTMVKLLVDFFSPSK GKLTFNGFNSTKVDKHVLRSYVNYVPQTPYIFSGTIKENLLLGSRPDITEKDILKACQIA EIESEIEQLPLQFETKMDENAKILSGGQKQRLTIARALLSPAKILIFDEATSGLDTITEK KVVDNLMKLKDKTIIFIAHRLAIAQRTNNILVVDHGQIVEQGSHEKLMQKHGFYYNLVEN >gi|227861176|gb|ACKR01000226.1| GENE 32 30626 - 31222 497 198 aa, chain + ## HITS:1 COG:no KEGG:LBA1794 NR:ns ## KEGG: LBA1794 # Name: not_defined # Def: gassericin K7 B accessory protein # Organism: L.acidophilus # Pathway: not_defined # 1 196 1 196 196 325 81.0 7e-88 MNNKDYESTEYYSYKFKNFSTMIIIPMAILVLILIVGSFFATRQSTVTSTGIVEPQNTLN IANRNYHEGQIVRRNREKWLVHLDDKQENTVHLFPMIKAKRTVNVVTYFPGNKIGAIKKG QTLYFQVANASGTMDRLVGKVKEIGVYPINLRGNNVYEVICKAKSKKNLKYGMEGNATII TGKSTYFEYFKDKILNQN >gi|227861176|gb|ACKR01000226.1| GENE 33 31377 - 32681 1311 434 aa, chain + ## HITS:1 COG:no KEGG:LBA1793 NR:ns ## KEGG: LBA1793 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 434 1 438 438 489 73.0 1e-137 MNKKKILMLMLSPAVLLMMNSTIVHADEGNTSQENKSEVVSKTENDDKNVSESEQKTSSK NEAAQTQNKQEEEPAASEDQNNQSQNTNNQDPNNANEEDSEDDEDEVSVEDYENNVKDFH RVKMQEVKDLLAEKNNQEHLMYIGRPTCYYCRQFSPDLKDFNEIVKGKLLYFNIDAEEGA HEYAFKEIGIPGTPTTMRFINGKIISAWVGGEKTGQELYNFLYSDAANKLVEQAVIKDQP KDDNTTESESNEIPEVTVAEDDQTQSSNDVAITDFVENSVFENAANVASSTADLTKVTTG NQEYAAPRAETKKKTVKKPVKPKIVATKVKKTAKSHKKNIILAAVSEKHGSVKENKQFDS VKVQSKPYSAVKNNQNRITKLKRLENDTIKNGSTQSLPSTGEKDNIWGQLIGMISILISL VLGISLGKKTKEEK >gi|227861176|gb|ACKR01000226.1| GENE 34 32682 - 32879 302 65 aa, chain + ## HITS:1 COG:no KEGG:LBA1792 NR:ns ## KEGG: LBA1792 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 56 1 56 63 90 76.0 2e-17 MKRIIISKDEVLLSGILGGSGSVDDIGLTDTEHMLPLYSKKGGNHKRDVYLENPKFFQSS FHRGR >gi|227861176|gb|ACKR01000226.1| GENE 35 33472 - 33723 324 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227879211|ref|ZP_03997083.1| ## NR: gi|227879211|ref|ZP_03997083.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] # 1 83 14 96 96 133 100.0 3e-30 MNKFETLTYEELSAVFGGNGGKARRRRKITNCAKAIGMGALKDGLKYGIAGTAFGTPIGT VGGAIFGANVGIISGSVSCVSHL >gi|227861176|gb|ACKR01000226.1| GENE 36 33741 - 33935 282 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227879212|ref|ZP_03997084.1| ## NR: gi|227879212|ref|ZP_03997084.1| hypothetical protein HMPREF0506_2085 [Lactobacillus crispatus JV-V01] # 1 64 1 64 64 115 100.0 7e-25 MMKEMNYKELEKVSGGTNWLGVGGSCLSGFIDALPSGSGMIKGCVEGAVKDFAKQNRHKK HKHR >gi|227861176|gb|ACKR01000226.1| GENE 37 34005 - 34220 135 71 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01817 NR:ns ## KEGG: LCRIS_01817 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 61 1 61 71 92 86.0 4e-18 MKNKILTERQVRNRSIIAGILALLIGLVWDYFQYKTLSFGTVFWNIVESVAFVIFMNIFM NSYYKKKSKKQ >gi|227861176|gb|ACKR01000226.1| GENE 38 34252 - 34551 59 99 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MILYIALPITPVTPITNNVILRTLHVPPKLANTKIAIIISIPIIEPICLFFSGSISIPLF HKTIYLFLVFYNYCITIIYNCNTEIKYFFGIIKKYQISR >gi|227861176|gb|ACKR01000226.1| GENE 39 34388 - 34570 228 60 aa, chain + ## HITS:1 COG:no KEGG:LBA1790 NR:ns ## KEGG: LBA1790 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 60 1 60 60 71 93.0 1e-11 MLPEKKRQIGSIIGMLIMMAILVFANLGGTWSVLRITLLVIGVTGVIGSAIYRIIHILRG >gi|227861176|gb|ACKR01000226.1| GENE 40 34575 - 35114 376 179 aa, chain + ## HITS:1 COG:no KEGG:LBA1789 NR:ns ## KEGG: LBA1789 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 179 1 179 179 238 88.0 1e-61 MKKLILNLLTIFAWIYQIFCVIGIIMWIVMGGVVLFGIHNPDFRAGFESGRGIKGVSVDN YIGAIVVVLLSLIMMSVAAFLICRYARLIVKNIKQEVYFADSNLNLLKKLLISVAGYTLI SIIDYIIFITHRTWFAKSSNNVLYPSGVTTGLLFLAVLYVVYLVFKYGMKVQEDADSII >gi|227861176|gb|ACKR01000226.1| GENE 41 35129 - 35338 200 69 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163756262|ref|ZP_02163377.1| 50S ribosomal protein L20 [Kordia algicida OT-1] # 2 64 3 65 67 81 65 7e-15 MIEVTLDFMLLKRKMSSKELAEKVGITPANLSILKTGKAHGVRFDTLSKICEVLDCQPGD LLVYKKDEE >gi|227861176|gb|ACKR01000226.1| GENE 42 35471 - 35662 263 63 aa, chain + ## HITS:1 COG:no KEGG:LBA1787 NR:ns ## KEGG: LBA1787 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 63 1 64 64 99 96.0 5e-20 MLYLIYIVLGLLIILAVNYAVTAFLAVHDLLENREKDQLSFGDAFKKYFAKNNIPTKFSD LFN >gi|227861176|gb|ACKR01000226.1| GENE 43 35689 - 36111 382 140 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01812 NR:ns ## KEGG: LCRIS_01812 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 140 1 140 140 220 96.0 1e-56 MNNEKFARENKRIIEGMGIGALVGPILALVMMYVKTAGSPQPFQIIMSIGAGLAFGLMFG GIMSASLVLNKTVASKIPWQKKVLKLAPQVIGTGVVVASAGVVITLVTNWGSVDIVKTIF STDTLWQFFDGVLLGLITIR >gi|227861176|gb|ACKR01000226.1| GENE 44 36129 - 37025 596 298 aa, chain + ## HITS:1 COG:SP1717 KEGG:ns NR:ns ## COG: SP1717 COG4152 # Protein_GI_number: 15901551 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 1 294 1 294 297 376 62.0 1e-104 MLKIEHLNKSFGSTQVLFDVSFSVSDGRILGLVGKNGSGKSTIFHSILKFVDYDGQISID GHSFNAKDYDNIGYLPEERSLMPKLTISDQVVFLASLKGMPAKKVKEELPDWLSRLAVKG IPMDKIKSLSKGNQQKVQMIATLIHQPKLIILDEPFSGLDPVNVDLMKQLILEEKRKGAT IIFSDHDMRNVEELCDDVVMINDGHIVLNGPVNEIKNSFGLTRIFVRTDKSATELSALPG VKDIILQNNGMKLLILADEKYGKDIFNQLSAGQYIQTFDQEPPTLDEIFKMKAGARHE >gi|227861176|gb|ACKR01000226.1| GENE 45 37018 - 38232 948 404 aa, chain + ## HITS:1 COG:SP1716 KEGG:ns NR:ns ## COG: SP1716 COG1668 # Protein_GI_number: 15901550 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 402 1 396 399 255 36.0 1e-67 MNKIWLVAKETYRREVKTWSYLLMILAPFLLVFFSFVIGMVSAGGSDDNYVGVVTSNSAL KQAIKKSEDFDNYSTEAKAKKAYKDEDIDGYVLIEQKNNQLAATYYSDEKMDSDLKSELL TSLNTAQQQLNLSKAKLTTKQTQSLATRAQFKQQVKHVDKKSFDNDPVKQISFWVLLIIL YMLVITYTQVTAQDIATEKGTKIMEVIFSSMPGGDYFTGKILGIFGEIITQVLIYVVGFV AVYCAAPYIDGFSDLFRQYKPMIDQAIGNLASWGLVFTIIGLVLFIIFAAFCGALVAKSE NANKAVGPLSTLMLIGFLFTVNMQSGGDTIFAKVLSYIPFLSSFVMPARVIMGNATNLEA AISALIALAATVASFIWIRKIYPNLILQTDDVGPWQNFKRSLRG >gi|227861176|gb|ACKR01000226.1| GENE 46 38540 - 39295 889 251 aa, chain + ## HITS:1 COG:BS_fruR KEGG:ns NR:ns ## COG: BS_fruR COG1349 # Protein_GI_number: 16078502 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 1 230 1 229 251 176 41.0 4e-44 MLTQERQSLIEDYVNQHELCRVSELCDLTATSESTIRRDLIQMEKNGILKRVHGGAQSVK HFSRDVSQNVRFSLNHDAKITIARYAVQNFVRPGDNVFIDAGTTTYEMVPFLAEVANVKI ITNGVETALCSLNHGINTILIGGEVKDDTHAVIGQTALSQIKAMNFSASFVGANGIEKNG NLTTPDPEEAAVKAAEIKQARHAYVLTDNSKIGERNFAVFANTSDVIVVTDQLKPGQKRS LPVGIELEEAK >gi|227861176|gb|ACKR01000226.1| GENE 47 39297 - 40211 1232 304 aa, chain + ## HITS:1 COG:lin2430 KEGG:ns NR:ns ## COG: lin2430 COG1105 # Protein_GI_number: 16801492 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Listeria innocua # 1 304 1 304 307 296 51.0 4e-80 MIYTVTVNPALDYVLQLEKVNRGEVNRTNNDSFLAGGKGINVSQILNQLNVDNTAWGFVG GFTGKELVRQLNQKRIESDFVTISDNTRVNVKIHAEKETEINAAGPNITDQEITAFKDRL NDLKKGDIVVMSGSLTPSLPTDFYQSLLPTIKEAGAEFVVDTTGQALLDTLAYKPLVIKP NHHELADLFGVTFDSSDVMLEYAQKLLDKGAQNVMVSMAGEGGFLLTKDHVYHAKGAVGT AVNSVGAGDSMIAGFVGTYYKTQDPKEGFRIGMACGAATAFTKDIAVKSQIDAVLPQIKV EQIS >gi|227861176|gb|ACKR01000226.1| GENE 48 40232 - 42229 2600 665 aa, chain + ## HITS:1 COG:BH0828_3 KEGG:ns NR:ns ## COG: BH0828_3 COG1299 # Protein_GI_number: 15613391 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Bacillus halodurans # 309 660 2 335 336 293 47.0 6e-79 MRIKDILSPDSMIMELKAKNKEDAIKEMADLEVATDIVNDEDAFIKSIWARENESTTGIG GGIAMPHARNKSINKARVLFAKSKEGIDYNSLDGQPVHLFFMITAPDGADNTHLQALAKL SGLLIDPDLVEALKNTKTPEEVIDLFEKAEAKKDEEDKKAAEAKKAKEAAKAQGTSDDDN KPLIVGVTACINGIAHTYMAQEALIKEGKKRGIEVRIETNGSEGVKDKLTPDEIKRAKGV IIASDKKVDMPRFDGKHLVNRPVVDGINKPGELIDDIMGGKADVYRASAQDKSTESSSTE KPGLWAGIYKNLMNGISHMLPFVIGGGILMAISFIVENYMGGAKTPAFIFLNNAGNLAFA FMVPVLAAYIAESIGDLPALMPGFVGGYMASIVNGQFQVNVQAHATSPAGFLGGIAAGFI AGYLMVGLKKVFAKLPRSVEGMKPMLFYPILGLLFIAAIMFYIINPIFSGINFAITHFLN GMGTGNLVLLTTILAGMMSIDMGGPFNKAAYVFASGAFANDPHSATAAILMAAVMVGGMV PPFATAIGTTFFKNKYTVEERRAGVSNWVLGFSFITEGAIPFAAADPGRVIPSCIIGSAV GGALVGLWHVGVPAPHGGLWVSPLAGNIGGPSHILFYFLATIIGSIVAGLIMSFWKKNVK EDPNE >gi|227861176|gb|ACKR01000226.1| GENE 49 42480 - 42725 183 81 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_01804 NR:ns ## KEGG: LCRIS_01804 # Name: not_defined # Def: transcriptional regulator, ArsR family # Organism: L.crispatus # Pathway: not_defined # 1 81 15 95 95 120 95.0 1e-26 MNHPIRIQILYYLNDNQKSSVNNLVKQFDVSQPAISRHLRILEEAKLVKSERVRQERYYS LEDKHVIKILDVLRQHVKEEF >gi|227861176|gb|ACKR01000226.1| GENE 50 42978 - 43874 1002 298 aa, chain + ## HITS:1 COG:ML0337 KEGG:ns NR:ns ## COG: ML0337 COG0803 # Protein_GI_number: 15827093 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Mycobacterium leprae # 17 293 4 291 302 105 24.0 7e-23 MQNAKSKITKLISFLGLIGVIALLVSACSNRSNSTSNSGKVSIITTTNVYADIAKNVVGK YGTAKAIISNSSTDPHDFEPTTADAKELTKANIIVANGLGYDSWMNKLASSVSKKPVLVG EDLMGLKKGDNPHIWYNLSMPTKYVNYLVKRLSKLDKKHAAYFKANGDKYLAKINQVKQL VKTNKKNSKPVFVSEPVFDYALREAGYKIGDKGFEEAIENGTDPSPKMINQMNNEIKAKK IAFFVNNTQASSSTVKSFVKLAKENNIPVLNVRETIPNHTTYLAWMKENYQNLAKIEK >gi|227861176|gb|ACKR01000226.1| GENE 51 43928 - 44548 231 206 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 8 201 294 508 563 93 31 2e-18 MRFDTKDVFQDLSFQLEDGSMTALLGPNGTGKTTLIKILMGMLKPTAGNFKFDSDVKLGY VPQFRNIDAEYPLSIRAFIGLNAPLFKTKKVKEQIDHQLEETHLEKIQNTRMGEASGGQK QRAYLAQALLDHPNMIILDEATASLDPAAKEELMGLIKHLNREHKITVLFVTHDIPLAKK YMTDYLYLNKGTIRQGKMDKFKEDFE >gi|227861176|gb|ACKR01000226.1| GENE 52 44548 - 45342 887 264 aa, chain + ## HITS:1 COG:L165709 KEGG:ns NR:ns ## COG: L165709 COG1108 # Protein_GI_number: 15674095 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Lactococcus lactis # 1 254 4 259 269 97 31.0 2e-20 MFQYEFMRYAFLASTFIAITCGVVGVYVVARSYAFLAHTLSEIGFAGAAFAVFIGIAPLW GMLLFTLLGSIGVGELSLHSDQKESSVSAISALFIGLGVLFLAISGSNSRYATNILFGSI IGVDKQGVIQLVVLSILVLLLIILVARSLNFDSFDHIGAVAHGVHTGWVGIAFLVALAMS VAIGAQIVGSLLVFILLTLPSSTARYIGKTIPAMISWSVFFALVGVWAGLYLGFITNWPV TFFIATIEVVIYLIAYGIHVIKHR Prediction of potential genes in microbial genomes Time: Wed May 25 06:56:45 2011 Seq name: gi|227861171|gb|ACKR01000227.1| Lactobacillus crispatus JV-V01 contig00252, whole genome shotgun sequence Length of sequence - 3005 bp Number of predicted genes - 3, with homology - 2 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 113 - 172 7.7 1 1 Op 1 . + CDS 244 - 1758 1235 ## COG1620 L-lactate permease + Prom 1760 - 1819 6.3 2 1 Op 2 . + CDS 1997 - 2470 289 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen + Term 2471 - 2530 6.3 + Prom 2593 - 2652 5.5 3 2 Tu 1 . + CDS 2759 - 2881 90 ## Predicted protein(s) >gi|227861171|gb|ACKR01000227.1| GENE 1 244 - 1758 1235 504 aa, chain + ## HITS:1 COG:BB0604 KEGG:ns NR:ns ## COG: BB0604 COG1620 # Protein_GI_number: 15594949 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Borrelia burgdorferi # 5 497 6 500 500 331 41.0 2e-90 MWIRFAIALLPIVWLIISLGVMRMPAARACVIGLILTMVLAVFSFKLPVLDTASGALEGI IMGIWPIMFVIVMALFAYNVTTESGGMKTIQDMLATISTDKRIIVLIIAWGFGGFLESIA GFGTAVAIAAGILIAFGLEPIRASVISLIANTTATAFGAIGLPIITLGEVTGLKQEELSF IVTLQLFVLVVLVPFILVILTEGSIKAIKGVGLITLMSGLGMAIPQVIAAKFVGAELPAI VGALCSIAITILLTRWHDEEEEPDVEKPSTKEMLKACSPFILVFIFVIFASSLVPAVNNL LNKVTTNLVVYTGKNPNTLSISWLSSPGTLLFVATLIGGAIQGVSFKKMMQILGQVIKSV WKTTITVCAIVGLAKVMVYAGMTDALAVALVSLLGPAYPLFAPLIGALGTFLTGSATSAN VLFGNLQLSAAMDLGVSKYWVVASNMTGATAGMLSPQNIAVATGSINREGDEGEILKETV KWGGLYLVVCCVFLYVVGLIAGMI >gi|227861171|gb|ACKR01000227.1| GENE 2 1997 - 2470 289 157 aa, chain + ## HITS:1 COG:Cj1552c KEGG:ns NR:ns ## COG: Cj1552c COG2865 # Protein_GI_number: 15792860 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Campylobacter jejuni # 1 147 341 487 488 85 31.0 5e-17 MIEPLRFLDVPPRSRNPELANILSKFHITESRGTGIDKVVYSLEEAHLPTVEILSKGTTA TQVTIREEKAFSELAITEKNESIYWDASLKYVNDMKISNSSIRKTFNLSDKDASQVSKAI ASSLEAYLIKPYDKNASKRYMEYIPYWGMAVQDIYHE >gi|227861171|gb|ACKR01000227.1| GENE 3 2759 - 2881 90 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQKLSILVLKKVVGGRSKIRRRVFKNNSYGYGNGSGGGAF Prediction of potential genes in microbial genomes Time: Wed May 25 06:59:20 2011 Seq name: gi|227861127|gb|ACKR01000228.1| Lactobacillus crispatus JV-V01 contig00253, whole genome shotgun sequence Length of sequence - 34225 bp Number of predicted genes - 44, with homology - 44 Number of transcription units - 8, operones - 6 average op.length - 7.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 77 - 151 87.5 # Gly GCC 0 0 + TRNA 188 - 261 76.0 # Pro CGG 0 0 + Prom 190 - 249 78.5 1 1 Op 1 . + CDS 336 - 791 325 ## PROTEIN SUPPORTED gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 + Prom 812 - 871 6.2 2 1 Op 2 . + CDS 896 - 3376 2113 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 3487 - 3527 7.2 + Prom 3514 - 3573 6.0 3 2 Op 1 58/0.000 + CDS 3598 - 7236 4159 ## COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit 4 2 Op 2 . + CDS 7252 - 10911 4055 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit + Term 10929 - 10976 3.5 - Term 10917 - 10964 3.5 5 3 Tu 1 . - CDS 10974 - 11657 265 ## COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases - Prom 11702 - 11761 5.6 + Prom 11637 - 11696 11.7 6 4 Op 1 56/0.000 + CDS 11839 - 12246 693 ## PROTEIN SUPPORTED gi|227879239|ref|ZP_03997109.1| ribosomal protein S12 7 4 Op 2 51/0.000 + CDS 12262 - 12732 799 ## PROTEIN SUPPORTED gi|227879240|ref|ZP_03997110.1| ribosomal protein S7 8 4 Op 3 4/0.000 + CDS 12766 - 14859 2949 ## COG0480 Translation elongation factors (GTPases) + Term 15017 - 15065 1.6 + Prom 14875 - 14934 11.1 9 5 Op 1 40/0.000 + CDS 15174 - 15482 510 ## PROTEIN SUPPORTED gi|58336629|ref|YP_193214.1| 30S ribosomal protein S10 10 5 Op 2 58/0.000 + CDS 15506 - 16144 1083 ## PROTEIN SUPPORTED gi|227879243|ref|ZP_03997113.1| 50S ribosomal protein L3 11 5 Op 3 61/0.000 + CDS 16159 - 16776 1031 ## PROTEIN SUPPORTED gi|227879244|ref|ZP_03997114.1| 50S ribosomal protein L4 12 5 Op 4 61/0.000 + CDS 16776 - 17081 508 ## PROTEIN SUPPORTED gi|227879245|ref|ZP_03997115.1| ribosomal protein L23 13 5 Op 5 60/0.000 + CDS 17097 - 17933 1411 ## PROTEIN SUPPORTED gi|161506876|ref|YP_001576830.1| 50S ribosomal protein L2 14 5 Op 6 59/0.000 + CDS 17952 - 18236 487 ## PROTEIN SUPPORTED gi|227879247|ref|ZP_03997117.1| ribosomal protein S19 15 5 Op 7 61/0.000 + CDS 18256 - 18609 564 ## PROTEIN SUPPORTED gi|161506878|ref|YP_001576832.1| 50S ribosomal protein L22 16 5 Op 8 50/0.000 + CDS 18623 - 19297 1147 ## PROTEIN SUPPORTED gi|227879249|ref|ZP_03997119.1| 30S ribosomal protein S3 17 5 Op 9 . + CDS 19297 - 19737 751 ## PROTEIN SUPPORTED gi|161506880|ref|YP_001576834.1| 50S ribosomal protein L16 18 5 Op 10 . + CDS 19727 - 19924 316 ## PROTEIN SUPPORTED gi|58336638|ref|YP_193223.1| 50S ribosomal protein L29 19 5 Op 11 50/0.000 + CDS 19943 - 20209 442 ## PROTEIN SUPPORTED gi|161506882|ref|YP_001576836.1| 30S ribosomal protein S17 20 5 Op 12 57/0.000 + CDS 20241 - 20609 600 ## PROTEIN SUPPORTED gi|58336640|ref|YP_193225.1| 50S ribosomal protein L14 21 5 Op 13 48/0.000 + CDS 20629 - 20865 386 ## PROTEIN SUPPORTED gi|227879254|ref|ZP_03997124.1| 50S ribosomal protein L24 22 5 Op 14 50/0.000 + CDS 20880 - 21422 901 ## PROTEIN SUPPORTED gi|227879255|ref|ZP_03997125.1| ribosomal protein L5 23 5 Op 15 50/0.000 + CDS 21435 - 21620 333 ## PROTEIN SUPPORTED gi|161506886|ref|YP_001576840.1| 30S ribosomal protein S14 24 5 Op 16 55/0.000 + CDS 21645 - 22043 666 ## PROTEIN SUPPORTED gi|227879257|ref|ZP_03997127.1| ribosomal protein S8 25 5 Op 17 46/0.000 + CDS 22068 - 22598 894 ## PROTEIN SUPPORTED gi|227879258|ref|ZP_03997128.1| ribosomal protein L6 26 5 Op 18 56/0.000 + CDS 22625 - 22981 574 ## PROTEIN SUPPORTED gi|227879259|ref|ZP_03997129.1| 50S ribosomal protein L18 27 5 Op 19 50/0.000 + CDS 22999 - 23505 837 ## PROTEIN SUPPORTED gi|227879260|ref|ZP_03997130.1| 30S ribosomal protein S5 28 5 Op 20 48/0.000 + CDS 23523 - 23708 293 ## PROTEIN SUPPORTED gi|227879261|ref|ZP_03997131.1| 50S ribosomal protein L30 29 5 Op 21 53/0.000 + CDS 23732 - 24172 735 ## PROTEIN SUPPORTED gi|227879262|ref|ZP_03997132.1| ribosomal protein L15 30 5 Op 22 28/0.000 + CDS 24172 - 25467 910 ## COG0201 Preprotein translocase subunit SecY 31 5 Op 23 6/0.000 + CDS 25478 - 26134 641 ## COG0563 Adenylate kinase and related kinases + Prom 26138 - 26197 12.4 32 6 Op 1 2/0.000 + CDS 26229 - 26450 302 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 33 6 Op 2 . + CDS 26467 - 26583 210 ## PROTEIN SUPPORTED gi|227894543|ref|ZP_04012348.1| 50S ribosomal protein L36 34 6 Op 3 48/0.000 + CDS 26604 - 26954 588 ## PROTEIN SUPPORTED gi|227879266|ref|ZP_03997136.1| 30S ribosomal protein S13 35 6 Op 4 32/0.000 + CDS 26976 - 27368 652 ## PROTEIN SUPPORTED gi|161506897|ref|YP_001576851.1| 30S ribosomal protein S11 36 6 Op 5 50/0.000 + CDS 27414 - 28352 1066 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 37 6 Op 6 6/0.000 + CDS 28359 - 28763 656 ## PROTEIN SUPPORTED gi|227879269|ref|ZP_03997139.1| 50S ribosomal protein L17 + Term 28856 - 28906 3.1 + Prom 28861 - 28920 6.8 38 7 Op 1 15/0.000 + CDS 28948 - 29799 504 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 39 7 Op 2 34/0.000 + CDS 29769 - 30620 360 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 40 7 Op 3 8/0.000 + CDS 30624 - 31421 543 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 41 7 Op 4 7/0.000 + CDS 31426 - 32214 729 ## COG0101 Pseudouridylate synthase + Prom 32234 - 32293 3.3 42 7 Op 5 59/0.000 + CDS 32319 - 32762 764 ## PROTEIN SUPPORTED gi|227879274|ref|ZP_03997144.1| ribosomal protein L13 43 7 Op 6 . + CDS 32774 - 33169 671 ## PROTEIN SUPPORTED gi|227879275|ref|ZP_03997145.1| 30S ribosomal protein S9 + Term 33264 - 33296 4.0 44 8 Tu 1 . - CDS 33239 - 34225 620 ## COG0582 Integrase Predicted protein(s) >gi|227861127|gb|ACKR01000228.1| GENE 1 336 - 791 325 151 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 [Streptococcus pneumoniae R6] # 6 144 7 145 165 129 43 2e-29 MTATTEEKYKLLVEQARALIEGEDDWIANTANLSALLFNSLNDVNFAGVYRYENDELILG PFQGMPACVHIQMGKGVCGTAAQAKTTQIVKDVHEFAGHIACDSASNSEIVVPIFNQGKL WGVFDFDSTKLANFDEIDKKYLTEIAKAIFA >gi|227861127|gb|ACKR01000228.1| GENE 2 896 - 3376 2113 826 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 809 2 805 815 818 51 0.0 MENSYSKSVNQVLKIAREQAQNFHHRLIGTEHVLLALVIETDGEAGKILRSWGLTPTAVR EEIERYTGYGSAPKASYMEMSPRLSLALDYARRRANDDGVKEVNTNHVLLGITASEQVLS AMILKNLNVDIPRLQQDVEDSLSQDQDFGDSANWLGDDNTTTGQKKRKSTTPNLDKVAVN LNQRVRNGEIDPVIGRDQEIKRVIQILSRRTKNNPVLVGEPGVGKTAVAEAIATEIVNKK VPQDMLKKRVMALNLGSLVAGTKYRGEFEDRMKKILNEVTKDGNVILFVDEMHTLIGAGG AEGAIDASNILKPSLARGDIQMIGATTFNEYQKYIEKDQALARRFQQVRLSEPSRDDTLT IMRGLKSKYEKFHHVTISDESLKDAVDLSTRYISDRFLPDKAIDLVDEASAAVKIRNNIS NDAELEKVNEQIKKLITQKNMAAASQNFVKAAQLQDEQNNLEMQREAMVEKLEDKVSAKA VVEPEDIAKVVSNWTGVPVTQMERNESRQLANLEKILHQRVIGQDKAVSAVARAIRRSRS GIKDERRPIGSFLFLGPTGVGKTELAKSVAAAMFGSEDNLIRLDMSEYMDQIASSKLIGS APGYVGYEEGGQLSEKVRRHPYSVILLDEVEKAHPDVFNLLLQVLDEGFLTDSKGRKVDF RNTIIIMTSNLGSRSLFDNKAVGFNADNADPAKARSAKVEQAIKQFFRPEFLNRIDETII FDELDKKQLRNIVTLLTHKLVVRLQKKGIELKLSRAALDQIAQDGYDPENGARPLRRAIQ NDIEDKIAEMLIVGEVKSGDTLKIGSQHGHLKFEVVNPKKETVKVK >gi|227861127|gb|ACKR01000228.1| GENE 3 3598 - 7236 4159 1212 aa, chain + ## HITS:1 COG:lin0285 KEGG:ns NR:ns ## COG: lin0285 COG0085 # Protein_GI_number: 16799362 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta subunit/140 kD subunit # Organism: Listeria innocua # 3 1164 5 1167 1184 1682 70.0 0 MLNGHVVNYGKHRTRRSFSRIKEVLKLPNLTDVQTESYKWFLDKGIKEVFDDIMPISDFS GKLSLEYVGYKLQKPKYTVDEARNHDATYAAPMHVTLKLTNQETGEIKTQDVFFGDLPLM TESGSFIVNGAERVIVSQLVRSPGVYYTGDYDKNGRQIFGTTVIPNRGAWLEYETDAKNV SFVRVDRTRKLPLTVLIRAMGIGSDSDIIDMFGQSDTLQFTLDKDVHKNPADSRVAEALK DIYERLRPGEPKTTDSSRSLLYARFFDPRRYDLAPVGRYKINKKLSLKNRLYGQTLAETL ADPDTGEIVAKKGTVVTHEVMDKLAPYLDRDDFKMVTYQPSKEGVLPDPIAVQEIKVYSK VDPEREVKLMSNGHIADNVKHLTPADVLASINYFFALQDEIGTTDDIDHLGNRRIRRVGE LLQNQFRIGLARMERVVRERMSIQDPSTVTPQQLINIRPIVASIKEFFGSSQLSQFMDQH NPLGELTHKRRMSALGPGGLTRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSLASY AIINKYGFIETPYRRVSWKDHKVTDKIDYLTADEEDNYIIAGANTPLNDDGSFKEKLILA RQKEDNVEVSPDKIDYMDVIPKQVVSVASACIPFLENDDSNRALMGANQQRQAAPLINPH GSLVGTGMEYRAAHDSGAALIAKAAGVVEYVDANEIRIRREDGTLDKYTLEKYRRSNNSK SYNQTPNVKLGDHVDKSDVIANGPTMDHGELALGQNPLIAFMTWNMYNYEDAIMLSERLV KDDVYTSISIEDYESEARDTKLGPEEITRELPNIGEDALKDLDADGIVRVGAEVHDGDIL VGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDVKVYTREAGDELS PGVNTMVRVYIAQKRKIQVGDKMSGRHGNKGTVAAVVPEEDMPYLPDGTPVDICLNPMGV PSRMNIGQLLELHLGAAARQLGIHVATPVFDGADENDVWDTVRQAGVDKDGKTVVYDGRT GEPFHNRVSVGVMHYLKLTHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWA LEAYGAAYTLQEILTYKSDDVVGRVKAYEAIVKGEKIPKPGVPESFRVLVKELQSLGLDI RVLDMNHNEIELRDMDEDSSEHLNIDTLSRMAEEQEKKKLAEETGKSEDKDSKENADKPV APADESDDKVSK >gi|227861127|gb|ACKR01000228.1| GENE 4 7252 - 10911 4055 1219 aa, chain + ## HITS:1 COG:SPy0099 KEGG:ns NR:ns ## COG: SPy0099 COG0086 # Protein_GI_number: 15674322 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Streptococcus pyogenes M1 GAS # 1 1192 1 1190 1213 1675 67.0 0 MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWSC ACGKYKGVRYRGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDI SPRLLEEVIYFAAYIVIDPGDTDLEPKQLLTEAEYREQKAKYGNRFEAKMGAEAVRELLK KVDLDKEVKDLKKELQTATGQKRTRAIRRLDILDAFKNSGNKPEWMVMDAVPVIPPDLRP MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR RGRPVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP MALELFKPFVMHELVKRGIASNIKNAKRKIDREDDDIWDVLEDVIKERPVLLNRAPTLHR LSIQAFEPILVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHIL APKDGKPIVTPSQDIVLGNYWLTQAERGREGEGMIFSSPAEAAVAYENGDIHYHTIIGMS ADAMPKKPWPKGHEHGIFITTYGKIVFNQLFPDDYFYINEPTEENLNNPLDAKYFLGEGE EIDKKIDEVGDDLIASPFKGSFLSDSIATIYKYYKVQRTSEYLDDLKKLGYTSSTTSGIT IGMTDVPEIQDKDEKVAKARKQVDVVSKQFRRGLITEQERHDRVISIWNACKDKIQNEIA QIHAPRNPISIMADSGARGNISNFTQLAGMRGLMATPNGGLFEIPVTSNFKEGLSVLELF MSTHGARKGMTDTALKTAQSGYLTRRLVDVAQDVIIRDDDCGTDRGITVSAIMEGDEMIE PLFDRLVGRFTAETVKDPETGETIVGRDVMMDENMAHKICDAGVTHVKIRSILTCDTPHG VCRKCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTLRTFHNGGVAGAEDITQGLPRV QELFEARNPKGRATISEVDGVIDSIQENPAEHTREITVKGKIDTRSYSVPYTASVAVSEG DYVHRGDKLTLGSVDPKELIQVTDTLTTEKYILAEVQKAYRMQGVDIADKHVEVLTRQML QKVRVLDPGETDILPGEVMDIGQFRDRNKEVIISGGIPATAQSVILGITKAALETNSFLS AASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGMPVYRSMEPEADVKKPDSV YSIADIEKQMKEKDKAKQD >gi|227861127|gb|ACKR01000228.1| GENE 5 10974 - 11657 265 227 aa, chain - ## HITS:1 COG:SP1808 KEGG:ns NR:ns ## COG: SP1808 COG1989 # Protein_GI_number: 15901637 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases # Organism: Streptococcus pneumoniae TIGR4 # 7 222 4 210 219 65 32.0 6e-11 MKYLFIFTNFIIGSCLASHAAVVYEHWNDKNFIYSRSQCNNCHLELSILDEIPLLSYLFL QGKCRYCYQQIPVELFLFELIGGFAFCLLDFSKTQDIITAILLFSLLVVAISDYQKQEFD LLLLIPAISVAILFNQFAAFTLIDWISFTLLLGIFSYSIMQRKMGLGDLLIYLIIACYFT PSFANLVFLFASILVIAIFLIEKTPINHRYPFIPYIFLGLVLTQLIF >gi|227861127|gb|ACKR01000228.1| GENE 6 11839 - 12246 693 135 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879239|ref|ZP_03997109.1| ribosomal protein S12 [Lactobacillus crispatus JV-V01] # 1 135 1 135 135 271 100 4e-72 MPTINQLVRKGRHSKVTKSKSPALNYSYNSMKKESVFNPAPQMRGVATRVGTMTPKKPNS ALRKYARVRLSNLIEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGV DGRKQSRSKYGTKKD >gi|227861127|gb|ACKR01000228.1| GENE 7 12262 - 12732 799 156 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879240|ref|ZP_03997110.1| ribosomal protein S7 [Lactobacillus crispatus JV-V01] # 1 156 1 156 156 312 100 2e-84 MPRKGHVTKRDVLADPVYNSKLVTKLINHLMVDGKRAKASSILYDAFNIVQDKTGKEPLD VFEEAMNNVMPVLEVRARRIGGSNYQIPVEVRPERRTTLGLRWLVSYARLRNEHTMDERL ANEIIDASNNTGSAVKKREDVHRMAEANRAFAHYRF >gi|227861127|gb|ACKR01000228.1| GENE 8 12766 - 14859 2949 697 aa, chain + ## HITS:1 COG:SP0273 KEGG:ns NR:ns ## COG: SP0273 COG0480 # Protein_GI_number: 15900207 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Streptococcus pneumoniae TIGR4 # 5 695 3 692 693 985 71.0 0 MANKREFPLAKTRNIGIMAHIDAGKTTTTERILYYTGKIHKIGETHEGDSQMDWMDEEKE RGITITSAATTAQWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVTVLDAQAGVEPQTEN VWRQAETYGVPRIVFVNKMDKIGADFDKSVKSLHERLNANAHAVQMPIGSADTFEGVIDL INMVADIYDEDKLGSKWDTVPVPDEYKEEAEARRNDLIEAVADVDDGIMEKFLGGEEISN DELKAAIRKATLDLKFFPVYAGSAFKNKGVQMMLDGVIDYLPSPLDVKPYVAHNPKTGDE VELMADDKKPFAALAFKIATDPFVGRLTFIRVYTGSLESGSYVLNASKNSRERVGRLLQM HANSRTEIPEVFSGDIAGAIGLKNTTTGDSLTDPDHPLILESLKVPDPVIQVSVEPKSKA DRDKMDVALQKLTEEDPTFRAETNPETGQTLISGMGELHLDIMVERMRREFNVDAKIGEP QVAYRETFTKEAKAQGKFVRQSGGKGQYGDVWIDFTPNEEGKGYEFEDAIVGGVVPREFI PSVDQGLQEAMKNGVLAGYPLIDVKAKLYDGSYHEVDSSEAAFKVAASLALKNAASKAGA VILEPIMKVQVTTPEEYLGDVMGSITARRGTMEGMEDRAGAKIINSFVPLSEMFGYATTL RSSTQGRGTFTMVFDHYSPTPKSIQADIIKKRGGDAE >gi|227861127|gb|ACKR01000228.1| GENE 9 15174 - 15482 510 102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58336629|ref|YP_193214.1| 30S ribosomal protein S10 [Lactobacillus acidophilus NCFM] # 1 102 1 102 102 201 100 7e-51 MASQTIRIRLKSYEHGILDESAAKIVATAKRTGAEISGPVPLPTERTLFTVLRSPHKNKD SREQFEMRTHKRLIDILNPTPKTVDSLMKLDLPSGVDIEIKL >gi|227861127|gb|ACKR01000228.1| GENE 10 15506 - 16144 1083 212 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879243|ref|ZP_03997113.1| 50S ribosomal protein L3 [Lactobacillus crispatus JV-V01] # 1 212 1 212 212 421 100 1e-117 MTKGILGRKVGMTQIFTKDGVLVPVTVVEATPNVVMQVKTVESDGYEAVQLGYQDKREVL SNKPEKGHADKAKTSPKRFIREIRGVELKDYEVGSEVTVDTFKEGDVVNVTGTSRGHGYQ GNIKRWGQSRGPETHGSRYHRIPGSMGSIINRVPKGKRLPGHMGVKKVTIENLVIEKVVA DKNVLMIKGNVPGAKNSLIVVKTASKAVKADK >gi|227861127|gb|ACKR01000228.1| GENE 11 16159 - 16776 1031 205 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879244|ref|ZP_03997114.1| 50S ribosomal protein L4 [Lactobacillus crispatus JV-V01] # 1 205 1 205 205 401 100 1e-111 MANLKVMDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGKRQGTSKVKNRSAVRGG GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLID NDLIVLDKLTMSAPKTKELVSMLNGLNADGKVLIVSDDNNVQLSARNLTKVKVVPVNGLN VEDAVNYGKLILDQDAVKKIEEVLA >gi|227861127|gb|ACKR01000228.1| GENE 12 16776 - 17081 508 101 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879245|ref|ZP_03997115.1| ribosomal protein L23 [Lactobacillus crispatus JV-V01] # 1 101 1 101 101 200 100 1e-50 MDARDIILRPVITEKSTNLMDDKKYTFDVLLTATKTQVRNAVEEIFDVKVKNVNIMNVRG KDKRVGRYTGKTARRRKAIVTLTNDSNDIKIFQDDNTEDNK >gi|227861127|gb|ACKR01000228.1| GENE 13 17097 - 17933 1411 278 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161506876|ref|YP_001576830.1| 50S ribosomal protein L2 [Lactobacillus helveticus DPC 4571] # 1 278 1 278 278 548 96 1e-155 MAIKIYKPTTNGRRHMTSSDFAEITKTKPEKTLLESQSHTAGRNSYGHITVRHRGGGHKQ KYRIIDFKRNKDNAKAVVKAIEYDPNRTANIALLHYTDGIKAYILAPKGLKVGDVVESGD SVDIKPGNALELKNIPTGTSIHNIELKPGKGGQLVRSAGASAQVLGADGDYTLVRLQSGE VRKILSSCRATIGTVGNEQHSLIQLGKAGRKRWLGKRPQSRGSVMNPNDHPHGGGEGKAP VGRPQPMTPWGKKARGIKTRDTKKASEKLIIRHRKGSK >gi|227861127|gb|ACKR01000228.1| GENE 14 17952 - 18236 487 94 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879247|ref|ZP_03997117.1| ribosomal protein S19 [Lactobacillus crispatus JV-V01] # 1 94 1 94 94 192 100 3e-48 MSRSIKKGPFADASLLKKVDAQADADKKQVIKTWSRRSTIFPSFVGLTIAVYDGRKHVPV YVTEDMVGHKLGEFVPTRTFHGHKSTDDKATTQA >gi|227861127|gb|ACKR01000228.1| GENE 15 18256 - 18609 564 117 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161506878|ref|YP_001576832.1| 50S ribosomal protein L22 [Lactobacillus helveticus DPC 4571] # 1 117 1 117 117 221 100 4e-57 MAEQISSAKAEARTVRIAPRKARLVVDLIRGKSVAEALAILEFTPRAASPIVEKVLRSAI ANAEHNYDLESANLYVSEAYVNEGATLKRFRPRAKGMASPINKRTSHVVVVVSEKND >gi|227861127|gb|ACKR01000228.1| GENE 16 18623 - 19297 1147 224 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879249|ref|ZP_03997119.1| 30S ribosomal protein S3 [Lactobacillus crispatus JV-V01] # 1 224 1 224 224 446 100 1e-125 MGQKINPNGFRLGVIRDWESKWYADKGYKETLNEDLQIRKFISEKLKDASVSTVEIERAA NRINISIHTAKPGMVIGKGGSEVEALRKQLNALTGKQVHINIVEIKKPDLDAKLVADSIA RQLEARIAFRRAMRQATQRAMRAGAKGIKVQTSGRLNGADMARREWHTEGRVPLQTLRAD IDYAWVNAFTTYGEIGVQVWINRGEILPTRKNKPASKPAKGGNR >gi|227861127|gb|ACKR01000228.1| GENE 17 19297 - 19737 751 146 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161506880|ref|YP_001576834.1| 50S ribosomal protein L16 [Lactobacillus helveticus DPC 4571] # 1 146 1 146 146 293 100 8e-79 MPLVPKRVKHRREFRGKMRGAAKGGKYIAFGEYGLEALESHWITNRQIEAARVAMTRYMK RGGKVWIRIFPQKSYTAKGVGVRMGSGKGAPAGWVAVVKREKIMFEIGGVDEATAREALR LASTKLPIKTKFVTRSSEVGGESNEG >gi|227861127|gb|ACKR01000228.1| GENE 18 19727 - 19924 316 65 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58336638|ref|YP_193223.1| 50S ribosomal protein L29 [Lactobacillus acidophilus NCFM] # 1 65 1 65 65 126 100 2e-28 MKAKDIRALTTDEMLEKEKQYKEELFNLRFQQATGQLENTARLSKVRKNIARIKTILSEK ALENN >gi|227861127|gb|ACKR01000228.1| GENE 19 19943 - 20209 442 88 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161506882|ref|YP_001576836.1| 30S ribosomal protein S17 [Lactobacillus helveticus DPC 4571] # 1 88 1 88 88 174 97 5e-43 MSETNERNRRHVYQGRVVSDKMDKTIVVVVDTYKNHPVYNKRIRYSKKYYAQDENNEAKV GDTVRIMETRPLSRKKRFRLVKIVKKSV >gi|227861127|gb|ACKR01000228.1| GENE 20 20241 - 20609 600 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58336640|ref|YP_193225.1| 50S ribosomal protein L14 [Lactobacillus acidophilus NCFM] # 1 122 1 122 122 235 99 2e-61 MIQNESRLKVADNSGARELLVIRVLGGSKRKTGNIGDIVVCTVKQATPGGVVKKGDVVKA VIVRTKSGARREDGSYIKFDENAGVIINADKSPRGTRIFGPVARELRENDFMKIVSLAPE VL >gi|227861127|gb|ACKR01000228.1| GENE 21 20629 - 20865 386 78 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879254|ref|ZP_03997124.1| 50S ribosomal protein L24 [Lactobacillus crispatus JV-V01] # 1 78 1 78 78 153 100 2e-36 MFVKTGDKVKVIAGKDKGKEGTVLSVNVKKNRVVVKGVNKIKKHQKPSQSNANGGVVESE GSIHASNVKVISSKKEDK >gi|227861127|gb|ACKR01000228.1| GENE 22 20880 - 21422 901 180 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879255|ref|ZP_03997125.1| ribosomal protein L5 [Lactobacillus crispatus JV-V01] # 1 180 1 180 180 351 100 3e-96 MASYLAKEYNEKVAPALEEKFNYKSSMQVPKIDKIVLNMGVGDAVSNAKNLDEAVEELTL ISGQKPLITKAKKSIANFRLREGMSIGAKVTLRGDRMYDFLYKLINVSLPRVRDFRGVST RSFDGRGNYTLGIKEQLIFPEIDFDKVNRTRGLDIVIVTTANTDEEARELLTQFGMPFAR >gi|227861127|gb|ACKR01000228.1| GENE 23 21435 - 21620 333 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161506886|ref|YP_001576840.1| 30S ribosomal protein S14 [Lactobacillus helveticus DPC 4571] # 1 61 1 61 61 132 100 2e-30 MAKTSQKIRNRRPAKFSSREYTRCERCGRPHSVYRKFGLCRICLKELAHKGQIPGLKKAS W >gi|227861127|gb|ACKR01000228.1| GENE 24 21645 - 22043 666 132 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879257|ref|ZP_03997127.1| ribosomal protein S8 [Lactobacillus crispatus JV-V01] # 1 132 1 132 132 261 100 5e-69 MVMTDPIADYLTRIRNANMAKHDSVEIPASNIKKSISEILKREGFIRDYEVADDNKQGVI KVFLKYGPNGERVISGLKRISKPGLRNYVGAEDLPKVLNGLGIAIVSTSAGVITDKEARQ KNVGGEVIAYIW >gi|227861127|gb|ACKR01000228.1| GENE 25 22068 - 22598 894 176 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879258|ref|ZP_03997128.1| ribosomal protein L6 [Lactobacillus crispatus JV-V01] # 1 176 1 176 176 348 100 2e-95 MSRIGLKTIEVPDSVTVTKEGDNITVKGPKGELTRYFDPKIKFEQKDGEINFSRSSESDK ALHGTERANLASMIEGVVDGYKKTLKLIGVGYRAQAQGNKITLNVGYSHPVVLTAPEGVS VKATSATDVEVEGVSKQDVGQFAAEIRAVRPPEPYKGKGIRYVDEYVRRKEGKTGK >gi|227861127|gb|ACKR01000228.1| GENE 26 22625 - 22981 574 118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879259|ref|ZP_03997129.1| 50S ribosomal protein L18 [Lactobacillus crispatus JV-V01] # 1 118 1 118 118 225 99 3e-58 MISKPDKNKLRLKRHRRIRGKISGTAERPRLSIFRSNKNIYAQLIDDVAGVTLASASTLD ENVSDATKVEQAAAVGKAIAEAAKAKDISTVVFDRSGYLYHGRVQALADAARENGLDF >gi|227861127|gb|ACKR01000228.1| GENE 27 22999 - 23505 837 168 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879260|ref|ZP_03997130.1| 30S ribosomal protein S5 [Lactobacillus crispatus JV-V01] # 1 168 1 168 168 327 100 8e-89 MANRNDSRNNRRNKDDIEDQLVAVNRITKVVKGGRRMRFAALVVVGDKKGRVGFGTGKAQ EVPEAIRKAVEDGKKKMINVPKVGTTIPHEVIGHYGSGNILLKPAEAGSGVAAGGAVRIV MDMAGISDVTSKSLGSNTPINVVRATIDGLKKLRTSEEVAKLRQPERA >gi|227861127|gb|ACKR01000228.1| GENE 28 23523 - 23708 293 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879261|ref|ZP_03997131.1| 50S ribosomal protein L30 [Lactobacillus crispatus JV-V01] # 1 61 1 61 61 117 100 1e-25 MTDLKITLIRSVAHRLPQQRKIVKALGLGRVDSTVVLPDNAATRGALLKIAHLISVEEIN K >gi|227861127|gb|ACKR01000228.1| GENE 29 23732 - 24172 735 146 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879262|ref|ZP_03997132.1| ribosomal protein L15 [Lactobacillus crispatus JV-V01] # 1 146 1 146 146 287 100 5e-77 MKLHELHSAEGSRRNRKRVGRGTSSGYGKTSGRGQKGQLARQGGHTRLGFEGGQMPLFRT MPKRGFKNINRKEYAIVNLDDLNKFEDGSEVTVESLKDNGLVKKELSGVKLLGKGELKVK LTVKVNKVSASAKQAVEAAGGTVEVI >gi|227861127|gb|ACKR01000228.1| GENE 30 24172 - 25467 910 431 aa, chain + ## HITS:1 COG:L0333 KEGG:ns NR:ns ## COG: L0333 COG0201 # Protein_GI_number: 15674060 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecY # Organism: Lactococcus lactis # 2 430 3 432 439 441 51.0 1e-123 MFSTLKNAFKDKEIRNKLYFTLFILLLYRIGANITVPGVNAKAITQVAQTGLVPMLDTVS GGGLDNYSIFSLGVSPYITAQIVIQLLQMDIVPTLVEWGKQGEVGRRKTNQVTRYLALVV AFIQSIGITLGFNALTQMGLVKNQTPQTYIEIAIVMTAGTMLLTWLGDEITDKGLGNGIS VIIFAGIIARLPSGLWQIYKEEIINNSASDRWQGILFFIAVIVAILIVTQFVTWVEQADR RIPIQYTRRATMSGSESFLPLKVNVSGVIPVIFASSFIVTPATILMAFQRTQGDQQWFKV MNQIFSLQTTPGVIIYTLLIILFTFFYAFVQVNPEKLAENLQKQGAYIPSVWPGKDTQDY ISKMLMKLSTVGSLFLGLVALLPQLATNFWNLPSSIGLGGTSLLIVIGVVLELSRQINGL LMKREYVGFIR >gi|227861127|gb|ACKR01000228.1| GENE 31 25478 - 26134 641 218 aa, chain + ## HITS:1 COG:lin2760 KEGG:ns NR:ns ## COG: lin2760 COG0563 # Protein_GI_number: 16801821 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Listeria innocua # 2 216 1 214 215 234 56.0 1e-61 MINLILLGLPGAGKGTASERIVDKYHLTHISTGDMFREAMANKTKVGLEAKSYIDKGNLV PDEVTAKLVEERLSQPDIKEGFILDGFPRTTVQAELLDGITKRLEKPLTNVIALEVDEDT LIKRLSARYMCKNCGATYNKLSKQPKVEGTCDRCGGHEFYQREDDKPEVVKNRLEVNEKM NAPLKDFYQKKGLLTVINGEQTPEKVFEDIDAVLSNNQ >gi|227861127|gb|ACKR01000228.1| GENE 32 26229 - 26450 302 73 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 71 1 71 72 120 84 9e-27 MAKDDVIEVEGKVVDTLPNAMFKVELENGATILAHVSGKIRMHYIRILPGDRVTVELSPY DLTKGRITYRFIK >gi|227861127|gb|ACKR01000228.1| GENE 33 26467 - 26583 210 38 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227894543|ref|ZP_04012348.1| 50S ribosomal protein L36 [Lactobacillus ultunensis DSM 16047] # 1 38 1 38 38 85 100 4e-16 MKVRPSVKPMCEHCKVIKRHGRVMVICSANPKHKQRQG >gi|227861127|gb|ACKR01000228.1| GENE 34 26604 - 26954 588 116 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879266|ref|ZP_03997136.1| 30S ribosomal protein S13 [Lactobacillus crispatus JV-V01] # 1 116 1 116 116 231 100 6e-60 MARIAGVDLPRDKRIVIALTYIYGIGEATAKKICAYAGVSEDIRSKDLTPEDQEKLRAEV DKYRVEGDLRREVSMNIKRLVDIGSYRGIRHRRGLPVRGQNTKNNARTRKGTKRNR >gi|227861127|gb|ACKR01000228.1| GENE 35 26976 - 27368 652 130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161506897|ref|YP_001576851.1| 30S ribosomal protein S11 [Lactobacillus helveticus DPC 4571] # 1 130 1 130 130 255 99 2e-67 MMPAKKTARKRRVKKHVESGVAHIHSTFNNTLVMITDVQGNAVAWSSAGALGFKGSRKST PFAAQMAAEAAAKSAMDQGMKHVEVSVKGPGAGRESAIRSLQATGLEITAIRDVTPVPHN GSRPPKRRRV >gi|227861127|gb|ACKR01000228.1| GENE 36 27414 - 28352 1066 312 aa, chain + ## HITS:1 COG:BH0162 KEGG:ns NR:ns ## COG: BH0162 COG0202 # Protein_GI_number: 15612725 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Bacillus halodurans # 1 312 1 314 314 386 64.0 1e-107 MIEFEKPNITVVEQEDSYGKFVVEPLERGFGTTLGNSLRRVLLTSIPGTGLVYVQIDGVL HEFSTVPGVREDVTKIILNLKKLELKSLSDEQKVIELDIEGPATVTADDLKVDADVQVLN PDQYICTIAEGGHLHMELAVKNGRGYVAASDNKSDDMPIGVIPVDSLFSPIKKVNYQVES TRVGKRDDFDKLTFEIWTDGSIKPNDALSFAAKILVEHFKVFESADANAKFSEVMVEKED DKKEKKLEMTIEELDLSVRSYNCLKRAGINTLQELTDKTESDMMRVRNLGRKSLEEVKNK LTDLGLSLRQED >gi|227861127|gb|ACKR01000228.1| GENE 37 28359 - 28763 656 134 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879269|ref|ZP_03997139.1| 50S ribosomal protein L17 [Lactobacillus crispatus JV-V01] # 1 134 1 134 134 257 99 8e-68 MNKGGKSMAYRKLGRDSAHRKAMLREMTTQLIMNERIVTTETRAKEVRKTAEKMITLGKR GDLAARRKAAAFVRDEVADVHEEKDAVVVKSALQKLFSDVAPRYKDRNGGYTRILKLAVP RKGDAAPMVILELV >gi|227861127|gb|ACKR01000228.1| GENE 38 28948 - 29799 504 283 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 1 277 124 397 398 198 38 3e-50 MPVDSAVEFKDVSFTYPDTKKAILDQISFKIKRGSWTSLIGHNGSGKSTISKLINGLLLP DSANNSRITVLGMTLNQKTVWDVREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPREQ MVKIVRKVLADVGMLDYIDAEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPKGR EQVLKIIKHLKKEKNLTVISITHDIDEANMADDVIVLNDGKILAQGTPTEIFSKTEMLQE IGLDIPFVQKLINKLNEVGISVPKNIKTKDELKQYLCQLNLKK >gi|227861127|gb|ACKR01000228.1| GENE 39 29769 - 30620 360 283 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 1 238 126 355 398 143 35 2e-33 ISMSIKFEKVNYIYSPGTSMEKKGLDNVSFELTENSFVALVGHTGSGKSTLMQHFNALLK PSSGTIDIAGYHITAQTGNKNLKKLRKRVSLVFQFPEAQLFENTVLEDIEFGPKNFGATD DEAKSKALKWLKRVGLDESMANKSPFELSGGQMRRVAIAGVMADEPEILCLDEPAAGLDP KSRKEMMKLFVDYQKAGHTVILVTHNMDDVVEYADDVLVMEHGKLIRHDAPKAIFTNKNW LEKHYLSEPTASLFASDLTNFNFKDKPLTLDQLVNEIKKNLRG >gi|227861127|gb|ACKR01000228.1| GENE 40 30624 - 31421 543 265 aa, chain + ## HITS:1 COG:lin2783 KEGG:ns NR:ns ## COG: lin2783 COG0619 # Protein_GI_number: 16801844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Listeria innocua # 1 249 2 250 266 246 51.0 3e-65 MSKIIVGRYIPGDSLIYKMDPRSKLLVTILFILAIFLANNSITYAIVTIFCFLAVIATGL NAKVFWDGVKPLIGLIFFTSLLQLFFMTGGHIYWHWWIFSLSSYGLINAIYIFIRFTLII LISTVMTVTTMPLEIADAMEWLLKPLKLFKVPVDKIALVISIALRFVPTLFDETLKIMNA QRSRGADFNDGGLIQRAKAITPILVPLFIHSLETAIDLSTAMESRGYRSSEGRTRYRVLS WSKYDLIALIYFVLLVGLLLIFRTH >gi|227861127|gb|ACKR01000228.1| GENE 41 31426 - 32214 729 262 aa, chain + ## HITS:1 COG:SP1599 KEGG:ns NR:ns ## COG: SP1599 COG0101 # Protein_GI_number: 15901439 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Streptococcus pneumoniae TIGR4 # 3 251 2 249 249 233 47.0 2e-61 MTTRYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKRVIVQGSGRTDAGVHAV GQVIHFDYPGKTIPANRMILAMNSMMPTDIIFNNCQIVNDDFHARYSIKGKWYRYRVSLD HFVNPFKRFYTGHFPYPLDIEKMQIAAQDLLGKHDFTSFAASGGRIEDKVRTIYYVKITE DKKDNEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLQRVIAAKDRQEVRQTAHAS GLYLYHVFYDEVPQKYRLDQHL >gi|227861127|gb|ACKR01000228.1| GENE 42 32319 - 32762 764 147 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879274|ref|ZP_03997144.1| ribosomal protein L13 [Lactobacillus crispatus JV-V01] # 1 147 1 147 147 298 99 2e-80 MRTTPLAKSSEIERKWYIIDATDVTLGRLSAAVATILRGKNKPQYTPNVDTGDNVIVINA SKIRLTGKKASDKFYYHHSSWRGGLKAVSYGELLANNPVKMVEISVKGMLPKNTLGHHEF MKMHVYAGEDHKHEAQKPEKLDINKLI >gi|227861127|gb|ACKR01000228.1| GENE 43 32774 - 33169 671 131 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879275|ref|ZP_03997145.1| 30S ribosomal protein S9 [Lactobacillus crispatus JV-V01] # 1 131 1 131 131 263 100 1e-69 MAQQAAYTGTGRRKDSVARVRLVPGNGKITVNDKDVDQYIPFPNLVKDLKQPLTLTETEG QYDIHVNVNGGGFSGQAGAIRLGIARALLEVDPDFRSPLKKAGFLTRDPRMKERKKPGLK KARKASQFSKR >gi|227861127|gb|ACKR01000228.1| GENE 44 33239 - 34225 620 328 aa, chain - ## HITS:1 COG:lin2601 KEGG:ns NR:ns ## COG: lin2601 COG0582 # Protein_GI_number: 16801663 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 30 325 2 310 314 99 25.0 7e-21 GDYLTKSFKTEKEAKVWSTTLELQKAKGQAIAQQNTLFKDFYYLFVQTVKVHDVRKATFD NYVKAGKVIDNLFPTAKLGKLDDVQMQSILDKYGKTHSKKTVTELLKKIRTALRYAYVKG YIYNDFASLLKAHGKELPKRNKASSMSDLTKLKHYLLEHTDNEFNLMVLLEISTGLRRGE ILGIKPEDVHYDGQYYCVEVKRSISPTTDDTKLKTKHSRRSVTIPKNIYDLLKDISQKDS GYLFDWFSFKQSGMLKELLKKIGIPSTTFHGLRDTHASFLFSNNIPLSYVSRRLGHDSIL TTEKYYLELMPEKKHSQDANALNLLESL Prediction of potential genes in microbial genomes Time: Wed May 25 06:59:25 2011 Seq name: gi|227861122|gb|ACKR01000229.1| Lactobacillus crispatus JV-V01 contig00254, whole genome shotgun sequence Length of sequence - 2653 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 81 - 134 5.1 1 1 Op 1 . - CDS 141 - 329 130 ## FI9785_392 hypothetical protein 2 1 Op 2 . - CDS 391 - 1311 604 ## LBA0027 putative replication initiator protein - Prom 1443 - 1502 5.4 - Term 1691 - 1739 2.5 3 2 Tu 1 . - CDS 1755 - 2513 486 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 2546 - 2605 6.2 Predicted protein(s) >gi|227861122|gb|ACKR01000229.1| GENE 1 141 - 329 130 62 aa, chain - ## HITS:1 COG:no KEGG:FI9785_392 NR:ns ## KEGG: FI9785_392 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii_FI9785 # Pathway: not_defined # 1 62 1 62 62 89 88.0 4e-17 MAKLLTREEASKYIGIDPKTFDKVFRSDPDFKRFKLGEHTERFTIKSIEAFIDLKETKLK KI >gi|227861122|gb|ACKR01000229.1| GENE 2 391 - 1311 604 306 aa, chain - ## HITS:1 COG:no KEGG:LBA0027 NR:ns ## KEGG: LBA0027 # Name: repB # Def: putative replication initiator protein # Organism: L.acidophilus # Pathway: not_defined # 1 253 61 313 313 423 83.0 1e-117 MLHFKDAKTISRVSKIFNDHEQYIEAWHSIINNGYSYLIHETTNAKSKHHYDPKEVVASF DFKDRINEIRQKVKKPSRQAIENFIDDYSNEKITKEELQEEIGVLEMAKHKTLLDHIEDI LAYKKHQRFLKDFKGQSCKVYWIYGVSGIGKTKLVREILEKQHPEDFCISGSQRDHFQEY KGQKFIVINDLRPNDYDYGQLLTLLDPWEIDKMAPARYHDRYLNARAIYITTPYDPLSFY LECNIANQVIDSFEQLKRRIIPLQLTKSNTNKVKNDLITDDKLSEAIWKIKSQKNTSHAN RDKSND >gi|227861122|gb|ACKR01000229.1| GENE 3 1755 - 2513 486 252 aa, chain - ## HITS:1 COG:BS_yulB KEGG:ns NR:ns ## COG: BS_yulB COG1349 # Protein_GI_number: 16080173 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 7 251 2 254 258 99 30.0 5e-21 MKNSIQVIKKRRKQIIDLLNHTREISISELSKKMKVSEMTIRRDCDYLSKMGKISKKRGV ISLVAPEEIQLSQPVSYIKQSLGKEAARYIHDGDIVFINSSSTAFDAIPHLLTKDIIIVT NNGYAGNFENTKSKVILTGGEIHHKLIMSGDLATKAFLSLRANYAIIGCAGISINQGIST PVMEEAEVNKTIIQQSQKVIVVADYSKFNKFSNFTIGTIKDIDLLITDTFVENSVINEFI KAGVNVIQVPLK Prediction of potential genes in microbial genomes Time: Wed May 25 06:59:34 2011 Seq name: gi|227861108|gb|ACKR01000230.1| Lactobacillus crispatus JV-V01 contig00255, whole genome shotgun sequence Length of sequence - 10048 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 4, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 41 - 100 4.7 1 1 Op 1 . + CDS 136 - 1209 1293 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold 2 1 Op 2 2/0.000 + CDS 1279 - 1737 733 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 3 1 Op 3 . + CDS 1759 - 3246 1506 ## COG3037 Uncharacterized protein conserved in bacteria 4 1 Op 4 . + CDS 3259 - 3561 464 ## EF1128 phosphotransferase enzyme II, B compnent SgaB 5 1 Op 5 9/0.000 + CDS 3580 - 4218 733 ## COG0269 3-hexulose-6-phosphate synthase and related proteins + Term 4262 - 4318 6.7 + Prom 4241 - 4300 3.8 6 2 Op 1 8/0.000 + CDS 4331 - 5212 945 ## COG3623 Putative L-xylulose-5-phosphate 3-epimerase 7 2 Op 2 . + CDS 5228 - 5956 866 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 8 2 Op 3 . + CDS 5973 - 6617 538 ## COG0546 Predicted phosphatases + Term 6624 - 6678 -1.0 + Prom 6637 - 6696 5.4 9 3 Tu 1 . + CDS 6740 - 9136 2657 ## COG3957 Phosphoketolase + Term 9183 - 9230 6.5 - Term 9171 - 9218 6.5 10 4 Op 1 . - CDS 9442 - 9648 194 ## COG3666 Transposase and inactivated derivatives 11 4 Op 2 . - CDS 9639 - 9818 141 ## LBA1907 transposase - Prom 9877 - 9936 4.4 Predicted protein(s) >gi|227861108|gb|ACKR01000230.1| GENE 1 136 - 1209 1293 357 aa, chain + ## HITS:1 COG:STM4382 KEGG:ns NR:ns ## COG: STM4382 COG2220 # Protein_GI_number: 16767628 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Salmonella typhimurium LT2 # 6 357 3 354 354 437 57.0 1e-122 MSAPKKIEDVNFKTFAENNFPEWGTFLNEQIADKQVPEKSIAMWWLGCMGVWIKTHEGTN VAIDMWNGTGKHTHGDGKMRKGHQMMRMTGGEALQPNLRNKPYVIDPFALRDLDALCVTH THHDHLDIYTAACVNKYCPDAKFIGPQGVVDEWIEWGVPKEKTIVVKPGDEVKVGAVTIK AMEAFDRTEFVTEDDPNKKLAGTMPIEMAKVAVNYLVKTSGGNVYHSGDSHYSNTYVKHG NENEIDVTLCAYGENPRGITDKLDDSQVLRMGEALKTKVIIPMHYDIWTNFYSDPKDILA LWDRKKYRLQYKFKPYIWQVGGEFDYPQDKDNFEYMYDRGFHDAFKNDPDLPFPEML >gi|227861108|gb|ACKR01000230.1| GENE 2 1279 - 1737 733 152 aa, chain + ## HITS:1 COG:SP2131_2 KEGG:ns NR:ns ## COG: SP2131_2 COG1762 # Protein_GI_number: 15901945 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Streptococcus pneumoniae TIGR4 # 21 151 20 148 148 91 37.0 6e-19 MLRYFLENNLLNITDEHPETWEEAIRVAGKVMKQDKLVTDDYIDSVIADVKKYGPYIVIV PGVAMPHSKADSEGVLGTGIGLTILPEPVSFDESDPDKSAKLFFMLAAKDNNTHVKNIAH LSDMLMEDNMIDDLSKVKNLDDYKAVMKKHNM >gi|227861108|gb|ACKR01000230.1| GENE 3 1759 - 3246 1506 495 aa, chain + ## HITS:1 COG:SP2038 KEGG:ns NR:ns ## COG: SP2038 COG3037 # Protein_GI_number: 15901859 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 4 479 1 477 485 398 46.0 1e-110 MAILNILSKIWDYFATNILQQPAFMIGFIVLLGYILEKKKWYEVLSGFLKATVGYFILSA GSVGLINTFRPILVGLKDRFHLNAMVTDPYFGQNAVAAGIMKEFGRSFADTMLLLLFAYI INIVLVRFSKYTKLRAVFTTGNVQVQQAATAFWLILFCFPKLGHLPILIVMSIILGLYWA VGSNLTVDITQELTDGAGFAIAHQQMFGIFIFAKLSEFLENRAKKKGKKEARRLEDVKLP GFMSIFNDNMVSTSILMLIFIGAILVVLGPDYLVKAKFMQPGQSFIFYILQTSLQFAVFL AILQLGVRTFVNELTESFTGISDKWLPGSVPGIDVAATLGFGSPNAGTIGFLFGALGQFT MIILLLIFHSPTIVIAGFIPLFFDNAAIGLYSNNRGGFKYAMIMPFISGLIQIGGSALIA TWVGMAKYGGYIGMFDWATVWPFFTVLMKFLGFVGICSLIIILVMIPQLQYRADKKGYFM ITEDYEGWKKLHGKE >gi|227861108|gb|ACKR01000230.1| GENE 4 3259 - 3561 464 100 aa, chain + ## HITS:1 COG:no KEGG:EF1128 NR:ns ## KEGG: EF1128 # Name: sgaB # Def: phosphotransferase enzyme II, B compnent SgaB # Organism: E.faecalis # Pathway: Ascorbate and aldarate metabolism [PATH:efa00053]; Phosphotransferase system (PTS) [PATH:efa02060] # 1 93 1 93 99 94 51.0 9e-19 MKIMSACANGSGTSLMLSRTARKAMEQLGYEITVSDHTSVSEARGTARNYDVVFTSLPFV NMFDEVKQKGGEVIGVKNVMSVPEVKEKIEASDIPNKFKK >gi|227861108|gb|ACKR01000230.1| GENE 5 3580 - 4218 733 212 aa, chain + ## HITS:1 COG:SPy0177 KEGG:ns NR:ns ## COG: SPy0177 COG0269 # Protein_GI_number: 15674382 # Func_class: G Carbohydrate transport and metabolism # Function: 3-hexulose-6-phosphate synthase and related proteins # Organism: Streptococcus pyogenes M1 GAS # 3 212 4 220 220 211 52.0 1e-54 MALPMLQVALDCESTAEALNVARQVMDQVDVLETGTILCYQDGVKAVSALRAVGPDKIVL ADVKCADAGTKFGKASKDAGADWMTCINAATVPTMVNARKEIEVQVELYEGWDNKERMQE WLNNGIDQVVYHQSRDAKFAGQKWGEKDVANVKALIDMGFKVSVTGGVHPEVLKLFKDLP VYCFIAGRDIRNAEDPHARAKQYKDEIKRIWG >gi|227861108|gb|ACKR01000230.1| GENE 6 4331 - 5212 945 293 aa, chain + ## HITS:1 COG:SPy0178 KEGG:ns NR:ns ## COG: SPy0178 COG3623 # Protein_GI_number: 15674383 # Func_class: G Carbohydrate transport and metabolism # Function: Putative L-xylulose-5-phosphate 3-epimerase # Organism: Streptococcus pyogenes M1 GAS # 6 287 5 286 287 283 48.0 3e-76 MTVNSLGIYEKALPQDLSWKEKFNLVKKLGFNFLEFSVDESDARLARLDWTKEQRKEFRD LMWDTDIRINNLMLSGHRRFPLGSKDPETRKKSLEMCQKAVDLCVDLGIHNIQMAGYDVY YEEKSENSRELYVENLAKCVHMAAKKNIMLSIETMDDPFITNIADIKQYKKQVRSPWLQA YPDLGNLSAWPQNDPAKDLENGIGNIVAIHLKDTLAVTDGFEGKFRDVPFGEGCVDFEGL LRELVRLDYNGSFTIEMWPGDNGDDDPVAEVKEAKAFFDKIFKKVGIEQEPVD >gi|227861108|gb|ACKR01000230.1| GENE 7 5228 - 5956 866 242 aa, chain + ## HITS:1 COG:CAC1341 KEGG:ns NR:ns ## COG: CAC1341 COG0235 # Protein_GI_number: 15894620 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Clostridium acetobutylicum # 1 230 1 230 233 278 60.0 6e-75 MLEDLKKEVYEANMQLPKLNLVTFTWGNVSGIDREKGLFVIKPSGVPYEELTPEDMVVVN LKGEVVEGTRNPSSDTPTHTYLYNHFQKIGGIVHTHSPWAVSFAAAKMDIPALNTTHADT FYTDVPAADALTKEQIEEDYEGNTGVTIVKTFKERGLDYEATPGALVSQHGPFTWGETPA KAVYNAKVLEVVAEEDYHTLQLTRANCHLPQYLLDKHYYRKHGKNAYYGQNNAHSKDHAK RA >gi|227861108|gb|ACKR01000230.1| GENE 8 5973 - 6617 538 214 aa, chain + ## HITS:1 COG:SA0530 KEGG:ns NR:ns ## COG: SA0530 COG0546 # Protein_GI_number: 15926250 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Staphylococcus aureus N315 # 2 213 3 214 215 174 39.0 8e-44 MLENYFFDFDKTLASSGKASLIATKQAFKLNNLDEPDDDQILDFMGIPADVSFPKMANRE LSESDAKKLVDTYRNIYGKYEKENTHLYPGMRDVLEDLQQKGKNLFVVSSKSHDILKRNL DNLKITQYFKDFVGCDEVQHYKPAPDGILILLDRYNLNNKQSVMVGDARYDLQMGKSASV KTCGAAWDAFSVDSLKNEHPDYLLFHVAELKNIE >gi|227861108|gb|ACKR01000230.1| GENE 9 6740 - 9136 2657 798 aa, chain + ## HITS:1 COG:CAC1343 KEGG:ns NR:ns ## COG: CAC1343 COG3957 # Protein_GI_number: 15894622 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoketolase # Organism: Clostridium acetobutylicum # 7 794 15 794 796 936 57.0 0 MAVDYDSKEYLKSVDAYWRAANYLSVGQLFLMKAPLLKTPLVAEDVKPKPIGHWGTIAPQ NFIYAHLNRVLKKYDLDMFYIEGSGHGGQVMVSNSYLDGSYTERYPEITQDEKGMAKLFK RFSFPGGVASHAAPETPGSIHEGGELGYSLSHGTGAILDNPDVIAAVEIGDGESETGPLA ASWFSNKFINPIKDGAVLPILQINGFKISNPTIVSRMSDKELTEYFRGMGWDPHFVSVFK GGRFDGEKDPMQVHEEMAKTMDEVIEEIKAIQKHARENNDATLPHWPMIIFQCPKGWTGP KKDLDGNPIENSFRAHQIPIPVAQDDMEHKEMLEKWLKSYKPEELFNEDGSPKKIVTENT AKGDHRMAMNPVTNGGKNPKRLNLPDYRKYALKFKPGQMEAQDMVEWAKYLSEVADLNPD TFRGFGPDESKSNRLFALLDDQKRQWEPEIHEPNDENLAPSGRVIDSQLSEHQDEGFLEG YVLTGRHGFFATYEAFGRVVDSMLTQHMKWLRKAKEQYWRHDYPSLNFVATSTVFQQDHN GYTHQDPGILTHLYEKNRPDLVHEYLPSDTNTLLAVGDKALKDRECINVLVTSKQPRPQW FSIEEATKLADKGLSYIDWASTDQGYKPDIVFASTETEPTLESLAAIDILHKRFPDLKIR YINVVDVMKLMSPKDNKNAISDKEFDRLFPSDIPVIFAWHGYKTMMESIWFARNHHNIHI HCYEENGDITTPFDMRVLNHLDRFDLAKDAVESIPSLAGKNPDFINEMDDLLAKHHQYIR DNGKDIPEVTEWKWTGLK >gi|227861108|gb|ACKR01000230.1| GENE 10 9442 - 9648 194 68 aa, chain - ## HITS:1 COG:BH0682 KEGG:ns NR:ns ## COG: BH0682 COG3666 # Protein_GI_number: 15613245 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 18 61 129 172 522 60 61.0 1e-09 MPMNWLRRALSTFPICWLINEGAVFIDGTKIEADANRYTFVWRKAVEKYHDKLKGQAVEA YVRTGTIS >gi|227861108|gb|ACKR01000230.1| GENE 11 9639 - 9818 141 59 aa, chain - ## HITS:1 COG:no KEGG:LBA1907 NR:ns ## KEGG: LBA1907 # Name: not_defined # Def: transposase # Organism: L.acidophilus # Pathway: not_defined # 1 42 1 42 502 75 83.0 5e-13 MYKNHITGQTALTLNLDFTIPSNHLANAISWIVDSIPEAILLYTLLKQVDQYTTQQSCQ Prediction of potential genes in microbial genomes Time: Wed May 25 06:59:42 2011 Seq name: gi|227861091|gb|ACKR01000231.1| Lactobacillus crispatus JV-V01 contig00256, whole genome shotgun sequence Length of sequence - 10225 bp Number of predicted genes - 16, with homology - 16 Number of transcription units - 9, operones - 6 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 299 210 ## LCRIS_00333 acetyltransferase, GNAT family + Prom 348 - 407 4.6 2 2 Op 1 . + CDS 428 - 718 143 ## COG1476 Predicted transcriptional regulators 3 2 Op 2 . + CDS 639 - 1079 264 ## gi|227879299|ref|ZP_03997166.1| hypothetical protein HMPREF0506_2167 + Term 1096 - 1132 3.1 + Prom 1172 - 1231 5.9 4 3 Op 1 . + CDS 1267 - 1701 363 ## COG3279 Response regulator of the LytR/AlgR family 5 3 Op 2 . + CDS 1698 - 2120 270 ## LJ1643 hypothetical protein + Term 2132 - 2170 2.1 - Term 2114 - 2164 4.2 6 4 Op 1 . - CDS 2180 - 2764 733 ## COG0693 Putative intracellular protease/amidase 7 4 Op 2 . - CDS 2801 - 3460 768 ## LCRIS_00335 hypothetical protein - Prom 3487 - 3546 6.9 + Prom 3450 - 3509 4.5 8 5 Op 1 . + CDS 3534 - 4292 841 ## COG0730 Predicted permeases 9 5 Op 2 . + CDS 4334 - 5014 728 ## COG0406 Fructose-2,6-bisphosphatase + Term 5017 - 5051 2.0 10 6 Op 1 . + CDS 5075 - 5974 1037 ## COG1230 Co/Zn/Cd efflux system component 11 6 Op 2 . + CDS 5983 - 6165 255 ## LCRIS_00339 hypothetical protein 12 6 Op 3 . + CDS 6177 - 6857 509 ## COG0588 Phosphoglycerate mutase 1 + Term 6902 - 6942 4.1 + Prom 6875 - 6934 6.5 13 7 Tu 1 . + CDS 6968 - 7903 883 ## COG4639 Predicted kinase + Term 7908 - 7951 7.8 - Term 7894 - 7939 8.2 14 8 Tu 1 . - CDS 7967 - 8371 441 ## lhv_0361 hypothetical protein - Prom 8413 - 8472 4.8 - Term 8460 - 8496 5.0 15 9 Op 1 . - CDS 8511 - 9860 1704 ## COG3579 Aminopeptidase C 16 9 Op 2 . - CDS 9928 - 10224 161 ## LCRIS_00345 hypothetical protein Predicted protein(s) >gi|227861091|gb|ACKR01000231.1| GENE 1 3 - 299 210 98 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00333 NR:ns ## KEGG: LCRIS_00333 # Name: not_defined # Def: acetyltransferase, GNAT family # Organism: L.crispatus # Pathway: not_defined # 1 98 51 148 149 150 74.0 2e-35 YQVYVATKENKVVGFVGFNEEELGWLYVDPKVQGQGIGSKLIDFTLENSTRPFYLEVLEG NPAQKLYLKKGFITIKHESGKMPGNESFSVEVDLMEYK >gi|227861091|gb|ACKR01000231.1| GENE 2 428 - 718 143 96 aa, chain + ## HITS:1 COG:MJ0272 KEGG:ns NR:ns ## COG: MJ0272 COG1476 # Protein_GI_number: 15668446 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Methanococcus jannaschii # 4 63 14 73 79 65 51.0 3e-11 MMIINNKIKEYRKKHQLTQRELAEKVGVTERTIISLEKGRYKPSIVLAYKLVQFFETDIE TLFCLNEYVKNEQAKGRNAYNSFCDSISHTALRINL >gi|227861091|gb|ACKR01000231.1| GENE 3 639 - 1079 264 146 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227879299|ref|ZP_03997166.1| ## NR: gi|227879299|ref|ZP_03997166.1| hypothetical protein HMPREF0506_2167 [Lactobacillus crispatus JV-V01] # 1 146 1 146 146 231 100.0 1e-59 MSKPKEGMLTILFAILSVIQLLELIYDVANRKSVNYIQDVIWLILGICLTVGYFYSTKYI GIAKIEEDDERDKFIQTKTNNQAFNILQWVLFVLGAVTIIIDVNLGQMGLDSRAMVIIVV GVVLIFLWAFSWILQLILMIINYFCN >gi|227861091|gb|ACKR01000231.1| GENE 4 1267 - 1701 363 144 aa, chain + ## HITS:1 COG:SP0161 KEGG:ns NR:ns ## COG: SP0161 COG3279 # Protein_GI_number: 15900099 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Streptococcus pneumoniae TIGR4 # 37 144 39 146 146 58 33.0 5e-09 MKVKFNIDNQLAGESAEFWLKKMTNKFSQLGKELSGEQDTIWCSYDDEIIPVKFENIYLI QVEQEQTLIYDKTQSYRYKGQLYQVKNILPHNFLIASRSAIINYQKIDHLEVMDGGNIDV IMKNQMRVQISRRKIKDLKERLGL >gi|227861091|gb|ACKR01000231.1| GENE 5 1698 - 2120 270 140 aa, chain + ## HITS:1 COG:no KEGG:LJ1643 NR:ns ## KEGG: LJ1643 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 1 139 1 140 143 99 43.0 5e-20 MKRMESFLVSGISGMGIGLTWYSIVTLFQTGTNWKNAQIPFTSLLFYLIVSFVMGAFFNL TGLIFEQTQWSLRKQIIVNFFVSYVAFFAFELVINDLALSVHFFLVITGVFVLMYLLAYG LYFLQLLRDVKQINQKLKEK >gi|227861091|gb|ACKR01000231.1| GENE 6 2180 - 2764 733 194 aa, chain - ## HITS:1 COG:SP0804 KEGG:ns NR:ns ## COG: SP0804 COG0693 # Protein_GI_number: 15900697 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Streptococcus pneumoniae TIGR4 # 1 183 1 176 184 165 47.0 5e-41 MTKVAVVFADGCEEVEGLSVVDVLRRLNVECDMVGLISKKVDGDHHIEITCDKVVDDSLL DYDLVAFPGGMTGSANLRDNEKLRDLMIKRHEAGKWDAAMCAAPRALARYGVLADADFTC YPGIEEECLKDAPSAHFSEKITVTDKEHKILTSRGPATAWAFAYAIAEALGVDTKQLKHG MLYDYLADNIQDSL >gi|227861091|gb|ACKR01000231.1| GENE 7 2801 - 3460 768 219 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00335 NR:ns ## KEGG: LCRIS_00335 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 219 1 219 219 393 99.0 1e-108 MTTFETLIFIPEGSLLNEKLAEKTALRQTLKHYGLDWGPAERLRYTSLEKEFKNLSSDDQ IDLALSTFLKEDLSKTRTVFDDAMKDQTRLVKGAIDFIDEVSGKLHLILLAKEKRTQIEP RLAPTELLSSFDNAYFADDFTDKLPSKNIFFKILKDNPDIDPDTVLVIGTNLDEEIQGAE NANLKSLWLAPKKDKIPISPHPTLHLSKLADLSFYLDLM >gi|227861091|gb|ACKR01000231.1| GENE 8 3534 - 4292 841 252 aa, chain + ## HITS:1 COG:Cgl2018 KEGG:ns NR:ns ## COG: Cgl2018 COG0730 # Protein_GI_number: 19553268 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Corynebacterium glutamicum # 12 234 17 255 269 93 29.0 3e-19 MTIWTVIFLLLGGVAGGLLSSVASMASLASYPVLLAVGIPPVFANVTNDAALIWTSIGST VSSTKELKGHWKQVLFYTIFTVVGSILGCILLLSFPPKIFEKAVPFFIAFSGLMIIVSGK HHSLNTKTQPTWLKIIYFLALLVMGMYTGYFGAAGGVIVLVLLTYITNDKFIVINAIKNV ICGFANLVALIIFMFTSHIYWLQAIPLAIGMFIGGYIGPAILRRVPEKPVRIFIASLAFI QAGYFFYTAYLQ >gi|227861091|gb|ACKR01000231.1| GENE 9 4334 - 5014 728 226 aa, chain + ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 5 220 7 216 224 99 31.0 4e-21 MATEVYLVRHGETMFNQLDKVQGWCDSPLTVKGINDLKRTAKALSQVHFDNMYSSDLKRA IDTVHLMKDANVVSDIGKIKKLPEFREVFFGTFEGDDINQTWEQVALAAGIDHEDDVTKI INQVGLRKFRAATKKADPRHLAENQDELDERMVRAIDVLRDLTKDEQRVLLVSHGDFIKT LSIKYWNKSNGKNDIVFPNNGSVTRGILHDDGSFEIVDYNVDAEEL >gi|227861091|gb|ACKR01000231.1| GENE 10 5075 - 5974 1037 299 aa, chain + ## HITS:1 COG:PH0896 KEGG:ns NR:ns ## COG: PH0896 COG1230 # Protein_GI_number: 14590752 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Pyrococcus horikoshii # 16 290 17 289 295 233 43.0 4e-61 MNKDHTTKRYVFVTLLNVVITIAEFIGGIFSGSLALLSDAFHNLSDVGAIILSFVAHLIS RKSRNQFKTFGYERAETLAAFTNGVILIVISVVLFVEAIQRFWKPEHIHGGIMLIVSIIG LAANIISMLAMHSDSKANLNVRSTFIHMLSDALSSVAVVIGAIFIYFWNVTWLDPVLTIL VSIFVLHEAYENTMKAANVLMESNPDIDLNEVNKIVLSFPIVQNIHHVHVWRYSDDFIMM DAHINVAPGLRADELEQLYQDIGQELQKELGINHITLQAECERGRKDKMIVPGHGINED >gi|227861091|gb|ACKR01000231.1| GENE 11 5983 - 6165 255 60 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00339 NR:ns ## KEGG: LCRIS_00339 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 60 1 60 60 82 100.0 4e-15 MFNVNIFTAIIVLIMGIYDMSYAFNRRKQPTNKGGIRAFMALGIIFTIAGIVMIVRVLMK >gi|227861091|gb|ACKR01000231.1| GENE 12 6177 - 6857 509 226 aa, chain + ## HITS:1 COG:SA2204 KEGG:ns NR:ns ## COG: SA2204 COG0588 # Protein_GI_number: 15927994 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Staphylococcus aureus N315 # 1 224 1 228 228 210 45.0 1e-54 MAKLVLVRHGESVANAANVYTGWNDVPLTKKGEEQAEKAGELIKTISDFAPTHIHTSVLS RAIVTANIVADVCNLLWLPMTKTWRLNERHYGALRGLNKDISRKVFGVEQVLLWRRSFDS VPPKQGSPMIDRRYKHFDQHLMPRAESLHQTQKRLMPYYYDHIASRLMNGEDQLIVAHGS SLRALIKKLEQINDHDIVKLEVPNAEPIVYTMDDHLKIINKQILRK >gi|227861091|gb|ACKR01000231.1| GENE 13 6968 - 7903 883 311 aa, chain + ## HITS:1 COG:FN1603_1 KEGG:ns NR:ns ## COG: FN1603_1 COG4639 # Protein_GI_number: 19704924 # Func_class: R General function prediction only # Function: Predicted kinase # Organism: Fusobacterium nucleatum # 1 183 1 174 174 82 28.0 9e-16 MRKLFLLRGAPGSGKSSFITRHHLNPYAISRDQIRLLLADLTVYYQEDADVLHQVIPRHV TVRTEQMVDHLVEHKMEYGETVIVDGTHIVPSAIEHFKPWVDKYHYECFVVDLMQHTTLE SLLKRNQTRMHYDWVKPEVVKQMYRSYEAHPEVPYWAHKVVPNQMDHALSQRETNLDRYA HVIAVPDMVDEEDFPHVHISNFYFSFNDKFTEKYGTYRNVVSIAKTEDEAVKQFKLPYFV FKFHHKHFLISAYPIRNEMLDPIRKVKGVWTYSTGLYNVADFVKEFPENKKQHVHQFNLS KLDPTRLLHIW >gi|227861091|gb|ACKR01000231.1| GENE 14 7967 - 8371 441 134 aa, chain - ## HITS:1 COG:no KEGG:lhv_0361 NR:ns ## KEGG: lhv_0361 # Name: not_defined # Def: hypothetical protein # Organism: L.helveticus # Pathway: not_defined # 21 134 2 115 115 142 92.0 5e-33 MTDYSKRQLKALNRISKKIEDAESHLARIEDSVPDRRHRTAQHETIKDIKSILKHARKVG EYDAKIDAKADENEYVYVEDEEGVIKDLEKEFKDLDDRLSKLTDVDGYDIKRYREEHHSL EKAKEVLAKAGKLK >gi|227861091|gb|ACKR01000231.1| GENE 15 8511 - 9860 1704 449 aa, chain - ## HITS:1 COG:SPy1651 KEGG:ns NR:ns ## COG: SPy1651 COG3579 # Protein_GI_number: 15675522 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pyogenes M1 GAS # 23 446 22 443 445 464 52.0 1e-130 MVKEINNDTINKFEQDLANHPVFDVASHAAQENGIYKASQNLQTKIDLDPTFSIEIDTGN PADQKQSGRCWMFSALNTMRHPLQKKFKLKDFELSQNYTNFWDKFEKSNWFFENVIATAD KDLGDRKVSFLFATPQQDGGQWDMLCGIIEKYGIVPKSVYPETANATNSSALNDTLNTLL RKDGLELRKLVQDGKSEDEVQARKEEMLNDVFRILATSLGVPPKKFNFEYRDDDKNYHID RDITPKEFFDKYVGMDLANHISTINAPTNDKPFHKVFSVEYLGNVEGGRQVRHLNLKVDE MKDLIIKQLKSGEVVWFGSNVVKDSERRAGLLDTNLYRRDQLFDADFTMSKADMLDSGES MMDHAMVITGVDIVDGKPTKWKIENSWGEKTGFKGYFVMSDSWFDSFVYQAVINKKFLPE DLKKAYDEGKDNPIQLLPWDPMGALAFKY >gi|227861091|gb|ACKR01000231.1| GENE 16 9928 - 10224 161 98 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_00345 NR:ns ## KEGG: LCRIS_00345 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 98 2 99 99 171 98.0 6e-42 NKQDTHQIFTIKNEEDILLSSVTLDKIARKDSNVWIMNHFFINPQFNSQDLLEKQMQKVW QLAQETNLPILPLDPMIIDYFTQHPQFHKIWYHRPFNR Prediction of potential genes in microbial genomes Time: Wed May 25 07:00:06 2011 Seq name: gi|227861082|gb|ACKR01000232.1| Lactobacillus crispatus JV-V01 contig00257, whole genome shotgun sequence Length of sequence - 7416 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 3, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 47 - 106 10.4 1 1 Op 1 1/0.000 + CDS 138 - 689 656 ## COG0756 dUTPase 2 1 Op 2 . + CDS 689 - 2065 1126 ## COG1066 Predicted ATP-dependent serine protease 3 1 Op 3 1/0.000 + CDS 2143 - 3642 1493 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases + Term 3660 - 3695 3.4 + Prom 3650 - 3709 9.9 4 2 Op 1 8/0.000 + CDS 3811 - 5166 1282 ## COG0215 Cysteinyl-tRNA synthetase 5 2 Op 2 7/0.000 + CDS 5159 - 5602 302 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 6 2 Op 3 . + CDS 5589 - 6344 569 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 + Term 6348 - 6393 4.2 7 3 Op 1 . + CDS 6478 - 7023 583 ## LCRIS_00352 DNA-directed RNA polymerase sigma factor, sigma H 8 3 Op 2 . + CDS 7087 - 7305 401 ## LCRIS_00353 hypothetical protein + Term 7363 - 7400 3.8 Predicted protein(s) >gi|227861082|gb|ACKR01000232.1| GENE 1 138 - 689 656 183 aa, chain + ## HITS:1 COG:L181168 KEGG:ns NR:ns ## COG: L181168 COG0756 # Protein_GI_number: 15672158 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Lactococcus lactis # 1 177 1 148 150 137 44.0 1e-32 MKTRGFEVVKKYQDQEINLPRRQTLASAGYDIEAAEDITIPSIWRLNFVRIFRLIRNGHQ LYERDYEMADQILKPLLVPTGLKAYMPEDEVLILANRSSNTFKRNLALPNGIGVIDADYY NNPNNEGEIFVQMINYGVRPLHIKKGDRIAQGIFIKYLKTDDDDPISRKRVSGFGSTNEK KGD >gi|227861082|gb|ACKR01000232.1| GENE 2 689 - 2065 1126 458 aa, chain + ## HITS:1 COG:L0303 KEGG:ns NR:ns ## COG: L0303 COG1066 # Protein_GI_number: 15674046 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Lactococcus lactis # 1 458 1 453 453 532 57.0 1e-151 MARVKTQYKCRSCGYISASYLGRCPNCGAWNQFEKETEEVQKRSTKATASRLIQKTGLNE PVKLDKIKAEKEERIVTKSEELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSDLSEK YKVLYVSGEESANQIKLRADRLGVGQSNMLLYPETDMHDIREQINDVKPDFVVIDSIQTM NEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILEHMVDTVLY FEGDEHHSYRILHSVKNRFGAANEIGMFEMVNEGLREVTNPSSIFLDQRLPNSTGSAVVV SLEGTRPLLAEIQALVTPTAFGYAKRTTSGISFNKASLLLAVLEKRGNLMLQNQDVYLTA TGGIKLNEPAIDLAIAMAVASSYTDKEISPTDCFVGEVGLTGEVRRVDKIDARVKEAAKV GFKRIFIPRHNMYSGLKDHGIEVIPVSSIPQALKLVFG >gi|227861082|gb|ACKR01000232.1| GENE 3 2143 - 3642 1493 499 aa, chain + ## HITS:1 COG:L0349 KEGG:ns NR:ns ## COG: L0349 COG0008 # Protein_GI_number: 15674035 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Lactococcus lactis # 4 493 3 483 483 548 57.0 1e-155 MAKEKIRVRYAPSPTGHLHIGNARTALFNYLFARHNKGTMVLRIEDTDQKRNVKGGSKSQ MENLHWLGIDWDEGPDKGGDYGPYRQSERKEIYQKYIDQLIDEGKAYYSYKTEEELEAQR EEQRAAGVAPHYTYEYEGMTADEIKQAQDEAKAKGLKPVVRIHIPEMETYSWDDIVKGHL EFESDTIGGDFVIQKRDGMPTYNFAVVIDDHLMKITHVLRGDDHVSNTPKQLVVYEALGW EPPKFGHMTLIINSETGKKLSKRDESVLQFIEQYRDLGYLPEAMFNFITLLGWSPKGENE IFNKREFIKQFDPARLSKSPAAFDQKKLEWINNQYIKKADRDTLLDLALNNLQEAGLVDE HPTPEKMEWVRQLVNIYSVQMSYTKQIVDMAKIFFEEAKDLSDEEIEEIKNDDGRGVIEE FKKQLDLIPRFTSVQIMNAIQATRKATGIKGRKLFMPIRIATTRSMVGPGIGEAMELLGK ERVLEHIDLTLKQMSANNL >gi|227861082|gb|ACKR01000232.1| GENE 4 3811 - 5166 1282 451 aa, chain + ## HITS:1 COG:SP0591 KEGG:ns NR:ns ## COG: SP0591 COG0215 # Protein_GI_number: 15900500 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 451 25 447 447 468 54.0 1e-132 MYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYKGYDVKYVSNFTDVDDKMINEARAEKTT VPKLAEKFINAFLADTTALNIEPATLHPRATHEINDIITFVKSLIDNGYAYEVDGDVYYR AKKFKHYGQLSDQNIEQLEEGASEHINDTEQSRKEDPIDFALWKAQKEPDEIGWDSPWGK GRPGWHIECSVMSTKYLGDTIDIHGGGQDLEFPHHENEIAQSEAKTGKKFVNYWLHNGFV TVGKDQEKMSKSLHNFVTVHDILREVDPQVLRFFMASVQYRRQINYSAENLAQAATILDR FKNTVTNINYRLADDTASEESAELAQAIMATNEKFEQAMDDDFNVQNALTAIYDLLPVVN ANANAARADKQELQKFKEKLASWLLVFGVDTNKLCVKNAGSNDDEIDALVKKRDEARANK DWATSDQIRDQLKEMGITIQDTPQGTRWTRD >gi|227861082|gb|ACKR01000232.1| GENE 5 5159 - 5602 302 147 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 10 137 5 133 141 120 48 2e-27 MTKIKKLAEEDVNPDTLNGQTLAYLGDAVYEVIIRRHLVKGGIVKPQVLQREATHYVSAK AQAALVTKMQDEEMLTDDELAAFRRGRNAKSHTKAKNTSLKTYQLSTGFEAMIGYLDLLG KNDRVADLSKWCIDTVEEDGLKNYDFK >gi|227861082|gb|ACKR01000232.1| GENE 6 5589 - 6344 569 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 3 249 4 249 255 223 45 3e-58 MTSNKDFVFGRHAGLDYLKTQSADKINKVFLQHGVQEEFANQVYSLAKKKRLVVQDVPKN KLDRLVAGGNHQGLVLAISSFEYADLDQLLDKYDAEGKEPFLLMLDSIEDPHNLGSILRS ADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWVFGTD MAGTDYREWNAQGKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNASVATGVLLY QAYNSRNPLVK >gi|227861082|gb|ACKR01000232.1| GENE 7 6478 - 7023 583 181 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00352 NR:ns ## KEGG: LCRIS_00352 # Name: not_defined # Def: DNA-directed RNA polymerase sigma factor, sigma H # Organism: L.crispatus # Pathway: not_defined # 1 181 1 181 181 344 99.0 8e-94 MINEEKLIKKVRAGDDQALEKLFHLYEPLVNSIVKQFYLHHYDRKDWDQEAMIVCYEAAL VFSPQKGKFSSLYKTKLFNHARTLVRYNMARRRQIYSQSIPLEKADIQGSVNEPCRSELS IPVDETYNNFVNSLSHVELIALLTIIGEISTEYAIDHLNIEAMKLVRARARTLQKMRKVL F >gi|227861082|gb|ACKR01000232.1| GENE 8 7087 - 7305 401 72 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00353 NR:ns ## KEGG: LCRIS_00353 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 1 72 1 72 72 109 100.0 3e-23 MADEIIKTALLDRHMKEAFDWSDSDMPVRDALWDYFMEKNGRDTMKTEEDMLPFLKDSDD KIEAFVNENLKK Prediction of potential genes in microbial genomes Time: Wed May 25 07:00:16 2011 Seq name: gi|227861066|gb|ACKR01000233.1| Lactobacillus crispatus JV-V01 contig00258, whole genome shotgun sequence Length of sequence - 11269 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 5, operones - 4 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 9 - 1517 1404 ## COG1070 Sugar (pentulose and hexulose) kinases + Term 1527 - 1551 -1.0 - Term 1507 - 1547 3.8 2 2 Op 1 . - CDS 1564 - 1989 586 ## COG1154 Deoxyxylulose-5-phosphate synthase 3 2 Op 2 . - CDS 2014 - 3234 1382 ## COG1154 Deoxyxylulose-5-phosphate synthase - Prom 3313 - 3372 7.2 + Prom 3399 - 3458 7.7 4 3 Op 1 . + CDS 3495 - 3644 258 ## PROTEIN SUPPORTED gi|227879326|ref|ZP_03997191.1| ribosomal protein L33 5 3 Op 2 . + CDS 3654 - 3824 194 ## LCRIS_00357 preprotein translocase, SecE subunit + Term 3826 - 3865 -0.2 + Prom 3830 - 3889 3.8 6 4 Op 1 45/0.000 + CDS 3933 - 4490 822 ## COG0250 Transcription antiterminator + Prom 4502 - 4561 3.4 7 4 Op 2 55/0.000 + CDS 4615 - 5046 701 ## PROTEIN SUPPORTED gi|161506935|ref|YP_001576889.1| 50S ribosomal protein L11 8 4 Op 3 . + CDS 5124 - 5816 1163 ## PROTEIN SUPPORTED gi|227879330|ref|ZP_03997195.1| 50S ribosomal protein L1 + Term 5824 - 5875 4.0 + Prom 5845 - 5904 4.0 9 5 Op 1 39/0.000 + CDS 5936 - 6802 782 ## COG0226 ABC-type phosphate transport system, periplasmic component 10 5 Op 2 38/0.000 + CDS 6806 - 7801 1209 ## COG0573 ABC-type phosphate transport system, permease component 11 5 Op 3 41/0.000 + CDS 7803 - 8690 862 ## COG0581 ABC-type phosphate transport system, permease component 12 5 Op 4 7/0.000 + CDS 8699 - 9493 276 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 13 5 Op 5 32/0.000 + CDS 9495 - 10250 205 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 14 5 Op 6 . + CDS 10268 - 10945 715 ## COG0704 Phosphate uptake regulator + Term 10951 - 10981 -0.6 Predicted protein(s) >gi|227861066|gb|ACKR01000233.1| GENE 1 9 - 1517 1404 502 aa, chain + ## HITS:1 COG:L52019 KEGG:ns NR:ns ## COG: L52019 COG1070 # Protein_GI_number: 15674166 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Lactococcus lactis # 1 500 1 502 519 403 40.0 1e-112 MKYIIGIDIGTTATKGVLYGEDGSEVAKLAISYPLIQEEAGQAEEDPQLIFDAVQKMIYQ LSQKASGQILAISWSSQMHSLIGLGENNELLTNSITWADNRSSDVVQRAKKSGWARMIYQ QTGMPPHPMAPVYKLLWLKEEQPTLFAQVKKWISIKEYIIWGLTGKILTDTTMAAGSGMM NLKTLTWDEKILAQIGLDQVQLPTIADQQSTVGKIIPEYRAKLGLNDETQIVLGASDGYL STIGVGVLDEKDFALNVGTSGAVRVIAPKAIVDQKNRFFCYPVDAKHYLLGGPVNNGGIV FDWARKTIFGPDETAEDVLNVAQTAPAGSNGLLFHPYLGGERAPIWNAQARGSFVGLTRN HTKPQMARSVLEGIVFNLLGASQGLLDQVGQPQALRVTGGFVQSDFVRQLIADIFNLPVI VIKNEQCGTLAAMFLAKTALEDKPDLEKIKKRTAESQVYFPNPQNVAIYQELILVYRKIE HELEASYEDLAQFQDKHPQKFE >gi|227861066|gb|ACKR01000233.1| GENE 2 1564 - 1989 586 141 aa, chain - ## HITS:1 COG:CAP0106 KEGG:ns NR:ns ## COG: CAP0106 COG1154 # Protein_GI_number: 15004809 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Deoxyxylulose-5-phosphate synthase # Organism: Clostridium acetobutylicum # 1 140 437 583 586 112 47.0 1e-25 MPTKDVPEGKEITAVDYSEIKYDIKPGKDVAVLALGDMYDMLGKKVAEKTGASLVNPVSA NILDTAALDKLTQENKVIVTIEDNILDGGFGEKVASYLGDKDIKVLNYGQKRVYTDQVPL KEILKDNRMTVDQIVEDIENA >gi|227861066|gb|ACKR01000233.1| GENE 3 2014 - 3234 1382 406 aa, chain - ## HITS:1 COG:L123365 KEGG:ns NR:ns ## COG: L123365 COG1154 # Protein_GI_number: 15673655 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Deoxyxylulose-5-phosphate synthase # Organism: Lactococcus lactis # 1 406 21 424 580 432 53.0 1e-121 MEKLASEIRTLILEKDAAEGGHLGPDLGIVEATIAYHYVFDAPKDKIVWDVSHQTYPHKM LTGRALAWLDPDHYEDVTPYSNPDESPYDYYAVGHTSTSIALATGMAKARDLMGKHENIM ALIGDGSMTGGLAYEGLNNAAIEKHNLVVVVNDNQMSIDDNVGGLVTALKKLRDSNGETK ENPFTAIGFDYRYVADGNDIQSMIDAFKAVKNVDHPILLHINTLKGKGYQPAIDNEEAHH WVMPFDLKTDKTTVAMPEGPTASSIALDVLEDHINNGEKIMAINAAIPGVFGLDRIKNKY PENYHDVGIAEQESVAFAAGMAKEGATPVLFENSTFLQRAFDQLSHDVAANDLPVVMMVA GGGISGTSKTHLGVFDQVMISNLPNWIYLAPTNLAEEKAMMEWAIK >gi|227861066|gb|ACKR01000233.1| GENE 4 3495 - 3644 258 49 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879326|ref|ZP_03997191.1| ribosomal protein L33 [Lactobacillus crispatus JV-V01] # 1 49 1 49 49 103 100 4e-22 MAVKKAALACSVCGSRNYSITASKNRTQRLELQKFCKHCGKKTLHKETR >gi|227861066|gb|ACKR01000233.1| GENE 5 3654 - 3824 194 56 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00357 NR:ns ## KEGG: LCRIS_00357 # Name: secE # Def: preprotein translocase, SecE subunit # Organism: L.crispatus # Pathway: Protein export [PATH:lcr03060]; Bacterial secretion system [PATH:lcr03070] # 1 56 1 56 56 98 100.0 9e-20 MIKFFKSVGHEMKLVKWPSAKQNRRDTATVITSSILFAAYLGALDWLFTWLTQRLM >gi|227861066|gb|ACKR01000233.1| GENE 6 3933 - 4490 822 185 aa, chain + ## HITS:1 COG:BH0118 KEGG:ns NR:ns ## COG: BH0118 COG0250 # Protein_GI_number: 15612681 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Bacillus halodurans # 6 181 2 178 178 193 56.0 1e-49 MVETAQKKWYVLHTYSGYEDKVKSDLLSRAQSMGMQDYIFRVMVPEEEKVETVRGKKQEI EEKIFPGYVLVEMVMTDESWFIVRNTPNVTGFVGSHGGGSKPSPLLDEEVTRLLKNQGQP AKKPVVNFDIGESVTITEGAFNGMVGKITDIQPDKYKLYVSVDMFGRATTAELDYDQVKK LDENE >gi|227861066|gb|ACKR01000233.1| GENE 7 4615 - 5046 701 143 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161506935|ref|YP_001576889.1| 50S ribosomal protein L11 [Lactobacillus helveticus DPC 4571] # 1 143 1 143 143 274 97 2e-73 MTVAKKVINVVKLQIPAGAATPAPPVGPALGQAGINIVGFTKDFNARTADQKGMIIPVVI TVYEDRSFEFITKTPPAPILLKQAAKIQKASGEPNTKKVGKVTKDQVKEIAETKMKDLNA ADIEAAMRMVEGTARSMGIEVED >gi|227861066|gb|ACKR01000233.1| GENE 8 5124 - 5816 1163 230 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879330|ref|ZP_03997195.1| 50S ribosomal protein L1 [Lactobacillus crispatus JV-V01] # 1 230 1 230 230 452 100 1e-127 MPKHGKKYLDAAKKVDSNKLYSVAEAMKLVKETSYANFDATVDVAYNLSVDPKQADQQIR GSIVLPNGTGKTQTVVVFAEGPQADQAKAAGADFVGSDDLVEKIQGGWLDFDVVVATPMM MAKVGRLGRILGPKGLMPNPKTGTVTMDIEKAVKNVKAGQVEYRVDRQAAIHTPIGKVSF TEDQLVENFDALRDVILRARPASAKGQYIKSVAVSATFGPGIKLDPLNLD >gi|227861066|gb|ACKR01000233.1| GENE 9 5936 - 6802 782 288 aa, chain + ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 1 286 1 301 302 281 50.0 1e-75 MKKHSIGKLVIMLVLMLAFVTGCANNGSKITIVGSSAMQLLAEQAGNDYRLSHQDSNIVV QGGGSGTGLSQVQAGAVQIGTSDVFAETQKGIDAKKLRDYKIAVVGIVPIVNKGVGVKNV SQKQLKQIFTGKLTNWKQLGGKNEAITVINRSKGSGTRSAFEDIILQGTKPVKSQEQDSN GAVKKIVNSTPGTISYLSFPYAHDTNIQKLSINGVKPTNKNITTNKWNIWCYEHMYTKGK PNKQTKAFINYMLGEKVQKDLVPKIGYLSINEMKVTRNSKNQVTQIGK >gi|227861066|gb|ACKR01000233.1| GENE 10 6806 - 7801 1209 331 aa, chain + ## HITS:1 COG:SPy1244 KEGG:ns NR:ns ## COG: SPy1244 COG0573 # Protein_GI_number: 15675204 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 37 331 9 307 311 298 58.0 1e-80 MDKKDKLKEVVDQAIASQHVPHVKLKKMGPTSVDIDKLTKPSKETHQEYWGKGLTYLAIV LIIVLVVSIIGFVGYHGLATFVSDHVNVIHFLTSTDWDPGEGKNHVGAAVMIVTSFLVTL LAALVATPFAIAIALYMTEYSSKKGANFLQSVTELLVGIPSVVYGFLGLTIIVPVIRKLF GGTGFGILAATLALFVMVLPTITSLTVDSLKAVPSHFRKASMALGSTHWQTIYHVVLRVA TPRILTAVIFGMARAFGEALAVQMVIGNAVLMPYNLVSPSATLTSQLTSQMGNTVMGTLP NNALWSLALLLLIMSLVFNFLVKLIGKKGQK >gi|227861066|gb|ACKR01000233.1| GENE 11 7803 - 8690 862 295 aa, chain + ## HITS:1 COG:SPy1243 KEGG:ns NR:ns ## COG: SPy1243 COG0581 # Protein_GI_number: 15675203 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 295 1 295 295 349 62.0 4e-96 MDAKKKDKLATAIIYILVGIVVLILAGILGDILITGIPHLSWRFLSSEASSYQAGGGVRD QLFNSIYLLILTTIISLPIALGAAIYLAEYAKDNWVTNLIRTTIQILSSLPSIVVGLFGY LLFVVQFGFGFSIISGALALTFFNLPILTSNIEEAIKGVPQDQREAGLALGLSNWKTIRG IVLPAALPGILTGIILSAGRIFGEAAALIYTAGQSGSTVNYADWNPFSPTSPLNVMRPAE TLAVHIWKVNTEGIIPDATIVSAATSALLVIVVIVFNLGARYLGNKLYRKLTAAK >gi|227861066|gb|ACKR01000233.1| GENE 12 8699 - 9493 276 264 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 30 251 12 231 245 110 35 3e-24 MQDLKPSYIKTFANDDLELSTEDLSVLYGGKVQKLFDASLQFKKNTITALIGASGSGKST FLRSLNRMNDRVATVNGKIWFHGLDVNKPNINVYELRKNIGMVFQRPNPFPKSIRENIVY ALKADGHKDRAELDRVVEESLRAAALWDEVKDKLDKSALALSGGQQQRLCIARALAVKPE ILLLDEPASALDPVSTSKLEDTLKQLRSKYTMIMVTHNMQQASRISDYTAFFHLGHAIEY NSTAEIFTNPKGKITENYIQGSFG >gi|227861066|gb|ACKR01000233.1| GENE 13 9495 - 10250 205 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 226 1 216 311 83 28 6e-16 MTTIISAKDVHLSYGNYEALHGISLDFKKKELTALIGPSGCGKSTFLRCLNRMNDDIENI NITGEIKFEGQDIYNSKMDLVSLRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELI DQRVEESLKQAAIWKETKDNLTRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDP ISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKKQ ITSDYLNGRFG >gi|227861066|gb|ACKR01000233.1| GENE 14 10268 - 10945 715 225 aa, chain + ## HITS:1 COG:SPy1240 KEGG:ns NR:ns ## COG: SPy1240 COG0704 # Protein_GI_number: 15675200 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Streptococcus pyogenes M1 GAS # 5 216 6 217 217 159 41.0 4e-39 MHEIFLDELKKLNTQFMEMGVLVNDDIDHATRAFVDHDKKTAQSMVDDEEKIPTESINIQ KQALKLMALQQPVATDFRVVISILKATTDLERIGENAMSIALETIRVKGNPRIPEVEEII SNMTHNVRHMLIQVLTAYVQDDEKMAREVASRDSMIDHDYVRARQLIVDGIEDDPSRAMA SSSYFVVTRLLERIGDHIVNLASWVVYKTTGELEELSNSTESETI Prediction of potential genes in microbial genomes Time: Wed May 25 07:00:21 2011 Seq name: gi|227861059|gb|ACKR01000234.1| Lactobacillus crispatus JV-V01 contig00259, whole genome shotgun sequence Length of sequence - 3338 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 4, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 52 - 330 305 ## LCRIS_00369 putative protein without homology + Term 454 - 488 4.0 + Prom 332 - 391 6.4 2 2 Op 1 47/0.000 + CDS 534 - 1046 828 ## PROTEIN SUPPORTED gi|227879340|ref|ZP_03997204.1| ribosomal protein L10 3 2 Op 2 . + CDS 1099 - 1461 578 ## PROTEIN SUPPORTED gi|227879341|ref|ZP_03997205.1| ribosomal protein L7/L12 + Term 1485 - 1531 10.5 4 3 Op 1 . + CDS 1538 - 2380 654 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component 5 3 Op 2 . + CDS 2386 - 3006 597 ## COG2813 16S RNA G1207 methylase RsmC + Prom 3040 - 3099 8.0 6 4 Tu 1 . + CDS 3134 - 3316 271 ## LCRIS_00374 putative protein without homology Predicted protein(s) >gi|227861059|gb|ACKR01000234.1| GENE 1 52 - 330 305 92 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00369 NR:ns ## KEGG: LCRIS_00369 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 92 1 92 92 139 97.0 3e-32 MNISKTVLALYQTIIGEKQKRLIKTVDAYLDINYGDKVYQIIDQVKERNIPILSFGDIAD QNNTYSNYTVFGNDQVDEMVDKINEIINNQNK >gi|227861059|gb|ACKR01000234.1| GENE 2 534 - 1046 828 170 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879340|ref|ZP_03997204.1| ribosomal protein L10 [Lactobacillus crispatus JV-V01] # 1 170 1 170 170 323 99 1e-88 MSKAAIAEKEKFVDAFAEELKAAKAILVINYLGLTVEEVTNMRKELRDNDVKMKVIKNTY LRRAAAKAGIEGLDDTFVGPTAVIYTDNADDVTEPARIVSKYEDDFDVIEIKGGMLEGKL TSKDEIKELAAIPGREGLLSMLVSVLQAPVRDFAYAVKAVAESKDEDSAE >gi|227861059|gb|ACKR01000234.1| GENE 3 1099 - 1461 578 120 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227879341|ref|ZP_03997205.1| ribosomal protein L7/L12 [Lactobacillus crispatus JV-V01] # 1 120 1 120 120 227 100 1e-59 MALDTDKIIEELKGATILELNDLVKAIEDEFDVTAAAPVAAAGAADAGAAKSEFDVELTE AGQEKVKVIKAVRDITGLGLKDSKDLVDGAPKNVKEGVSEDEANDIKAKLEEVGATVTLK >gi|227861059|gb|ACKR01000234.1| GENE 4 1538 - 2380 654 280 aa, chain + ## HITS:1 COG:CAC1317 KEGG:ns NR:ns ## COG: CAC1317 COG1226 # Protein_GI_number: 15894597 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Clostridium acetobutylicum # 12 240 11 238 256 107 31.0 3e-23 MMKDIERRLTPYQWVMAILAIISIFLIILDFAAVINIDEPTSKWFWINSAIVVYFAIDYF CGLHAAEDKKLYFKTHIYDLLSIIPMGLLFISLNIFNLSGLVSDLRLLRLIRLAGLMGKL RNIFHTNGLLYVIFFTITFLLVGAEAFAITEHVTLDTAFWWVISTASTVGYDAIFGKTIP PHSIVGKFVTLVMMLLGIGIVGMLTSSITSYLMRRTNGANTLKTHDNIQLILKKLDNLEK QNKDLADQNKKMQAQINELKDVQNTTELHKIKEWFEKKKG >gi|227861059|gb|ACKR01000234.1| GENE 5 2386 - 3006 597 206 aa, chain + ## HITS:1 COG:lin0284 KEGG:ns NR:ns ## COG: lin0284 COG2813 # Protein_GI_number: 16799361 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Listeria innocua # 6 205 3 200 201 183 49.0 2e-46 MSEEKNQMYFATDPTAKHDQHVVDYHVDNIDLKFTTDAGVFSKMRVDYGSGVLIKAMKDV VFPKDNILDVGTGYGPIGLFAAKFWPDQTVDMVDVNERGLSLAKQNAQVNHIDNVNIYSS DCYEHVDNDKKFGLILTNPPIRAGKKVVNEILLGANEHLVNGGILLVVIQKKQGEPSARK LMTNTYGNCEILTRDKGYYILKSTKK >gi|227861059|gb|ACKR01000234.1| GENE 6 3134 - 3316 271 60 aa, chain + ## HITS:1 COG:no KEGG:LCRIS_00374 NR:ns ## KEGG: LCRIS_00374 # Name: not_defined # Def: putative protein without homology # Organism: L.crispatus # Pathway: not_defined # 1 60 1 60 60 106 100.0 2e-22 MKKAWKYIVAVLIVIVGVFMLGMISGDNETAAPAGIAALYLILSGIFFYHNFRNRNIEPL