Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:02:15 2011 Seq name: gi|300497847|gb|AEAT01000001.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00235, whole genome shotgun sequence Length of sequence - 27626 bp Number of predicted genes - 27, with homology - 27 Number of transcription units - 10, operones - 6 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 6/0.000 - CDS 191 - 2161 2480 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 2 1 Op 2 . - CDS 2161 - 4731 3519 ## COG0249 Mismatch repair ATPase (MutS family) - Prom 4755 - 4814 3.9 - Term 4795 - 4830 4.0 3 2 Op 1 41/0.000 - CDS 4870 - 6483 1563 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 4 2 Op 2 . - CDS 6506 - 6790 247 ## COG0234 Co-chaperonin GroES (HSP10) - Prom 6861 - 6920 4.0 - Term 6887 - 6945 11.1 5 3 Tu 1 . - CDS 6946 - 7632 1061 ## COG2344 AT-rich DNA-binding protein 6 4 Tu 1 . + CDS 7925 - 9841 2653 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 9848 - 9903 13.0 - Term 9847 - 9880 4.1 7 5 Op 1 9/0.000 - CDS 9908 - 10948 727 ## PROTEIN SUPPORTED gi|229879751|ref|ZP_04499249.1| (SSU ribosomal protein S18P)-alanine acetyltransferase 8 5 Op 2 20/0.000 - CDS 10951 - 11481 220 ## PROTEIN SUPPORTED gi|118476007|ref|YP_893158.1| SSU ribosomal protein S18P alanine acetyltransferase 9 5 Op 3 . - CDS 11486 - 12208 501 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 10 5 Op 4 . - CDS 12226 - 12756 708 ## LDBND_1533 hypothetical protein 11 5 Op 5 . - CDS 12799 - 13548 930 ## COG3884 Acyl-ACP thioesterase 12 5 Op 6 2/0.500 - CDS 13545 - 14408 1097 ## COG0313 Predicted methyltransferases 13 5 Op 7 1/1.000 - CDS 14408 - 14740 320 ## COG4467 Uncharacterized protein conserved in bacteria 14 5 Op 8 2/0.500 - CDS 14755 - 15627 1076 ## COG0470 ATPase involved in DNA replication 15 5 Op 9 4/0.500 - CDS 15627 - 15953 469 ## COG3870 Uncharacterized protein conserved in bacteria 16 5 Op 10 . - CDS 15965 - 16603 735 ## COG0125 Thymidylate kinase - Prom 16642 - 16701 3.9 - Term 16687 - 16726 6.8 17 6 Op 1 . - CDS 16733 - 16969 407 ## LDBND_1540 hypothetical protein 18 6 Op 2 23/0.000 - CDS 16971 - 17528 637 ## COG0353 Recombinational DNA repair protein (RecF pathway) 19 6 Op 3 30/0.000 - CDS 17572 - 17901 601 ## COG0718 Uncharacterized protein conserved in bacteria 20 6 Op 4 2/0.500 - CDS 17973 - 19796 2340 ## COG2812 DNA polymerase III, gamma/tau subunits - Term 19807 - 19844 6.2 21 7 Op 1 . - CDS 19951 - 20466 589 ## COG0590 Cytosine/adenosine deaminases 22 7 Op 2 . - CDS 20467 - 21069 844 ## COG2813 16S RNA G1207 methylase RsmC 23 7 Op 3 . - CDS 21071 - 21586 846 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase - Prom 21626 - 21685 3.6 24 8 Op 1 . - CDS 21693 - 24560 3630 ## LDBND_1547 hypothetical protein 25 8 Op 2 . - CDS 24617 - 24895 172 ## LDBND_1548 hypothetical protein - Prom 25079 - 25138 5.0 + Prom 25002 - 25061 4.6 26 9 Tu 1 . + CDS 25116 - 26327 2328 ## LDBND_1550 hypothetical protein + Term 26342 - 26388 5.3 + Prom 26362 - 26421 7.6 27 10 Tu 1 . + CDS 26459 - 27217 838 ## gi|300811145|ref|ZP_07091657.1| hypothetical protein HMPREF9264_1885 + Term 27458 - 27500 8.7 Predicted protein(s) >gi|300497847|gb|AEAT01000001.1| GENE 1 191 - 2161 2480 656 aa, chain - ## HITS:1 COG:SP0173 KEGG:ns NR:ns ## COG: SP0173 COG0323 # Protein_GI_number: 15900110 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Streptococcus pneumoniae TIGR4 # 1 654 1 635 649 432 40.0 1e-121 MAKIHELSENLTNQIAAGEVIERPASVVKELVENAIDAQASRIRVEVQHSGLKQISVQDN GSGIAPDQVDLAFMRHATSKIQDEHDLFNIATLGFRGEALASIAAVAHVEILTSTDGQTA TRAAFAGGVKKFQEDAGSAKGTKITVGDIFYNTPARLKYLKSPKTELLKIVDIVNRIALG HPEISLTLASDGKVLLRTPGNGNLKQDVANIYGRKVAEKMLTVENEDPDFTLYGLVSEAN LTRSSRNFISILLNGRYIKNYQLSSALLDGYGNKLGGKYPIAVLAIEADPLLVDVNVHPT KEEVRLSKEKELSRLITSAVTEALMDEDEASPLFQLTPFKDKTQLDQLEFNLKPNVVDTR RPDDFQLEVSQVAEPEGKTDITNKKETESKETKETAEKKENKQEEKEEKTSAPEYVDLNQ VREDDQYVLTKSWGQHVKEQTALPPFAGGEEAASPVTSKADQLLRQHLPALRLLGQMGGY LLAEHGGDLYLLDQVAARRRLEYDQILASLEKDENYQQGLLEPLVFDFSVYDYQKLKDQL PLLRQLGLEMEDFGQNTLLMHSYPTWLKGEVTVQVRELLDQLLSSRENDGKSLLKLVAAK AAESNVSRRVNLTGAEAADLLLRLQTASDPYRDASGQVAVVRLSQNDLSKLFKKGK >gi|300497847|gb|AEAT01000001.1| GENE 2 2161 - 4731 3519 856 aa, chain - ## HITS:1 COG:BH2369 KEGG:ns NR:ns ## COG: BH2369 COG0249 # Protein_GI_number: 15614932 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus halodurans # 7 854 5 865 865 816 51.0 0 MPRKATTPMMEQYYQIKDQYPDAFLFYRVGDFYELYEDDAIKGSQILELTLTHRSNKSEN PIPMAGVPHMAVDSYVNTLVEKGYKVAICEQLEDPKKAKGMVKRGIIQLVTPGTKMAQGP DDSQENNYLTSVVEKAGGYGLAYSDLSTGEIFATHVKHYAEVVNELLSLRTREVVLAGKL SASDRDRLQKANITVSEPAELEGEHAEISYVQQKLTDSMEKAAVRQLVVYLLATQKRSLA HLQVAESFEIGQYLQMANTVQRNLELTQSATTGRKQGSLFWVLDKTTTAMGGRLLKQWLS RPLLSLDRIKQRQQMVQALLDDYFTRENIVDSLKGVYDLERLSGRVAFGNVNPRELLQLA KSLEATKPIIQALAESGNPDLEKYGQGIDPQSELAESITNCLVDQPPISAKDGGIIRAGV SEDLDKYREAMNGGKKWLAQMEMEERQRTGIDNLKIGYNRVFGYFIQVSKGNVAKVPQDR YTRKQTLTNAERYITPELKEHENLILEAESRSTDLEYELFSQLREAVKAHIPALQELGRQ LAALDVFVAFAQDAEEKNYCRPSFSSKNEIAVKNGRHPVVEAVLPAGSYIPNDLVMDEDT SIYLITGPNMSGKSTYMRQLALIAIMAQIGSFVPADSAKLPVFDQVFTRIGAADDLYSGK STFMVEMSEANEALQHASSRSLVLFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFAT HYHELTELDETLPHLKNIHVGATEENGQLIFLHKILPGPADQSYGIHVAKLAGLPRAVLR EASSMLKRLEAEGAREINPSRQQLDLFSPVEVVEENPLKAEQEELLDEISQVNLNEKTPL EVMQLVADWQQALKEE >gi|300497847|gb|AEAT01000001.1| GENE 3 4870 - 6483 1563 537 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 536 3 540 547 606 58 1e-173 MAKDIKFSEDARRSLLNGVNKLANTVKTTLGPKGRNVVLEQSYGAPTITNDGVTIAKAIE LEDHYENIGAKLVAEAASKTNDIAGDGTTTATVLTQAIVQEGMKNVVAGANPVGIRRGIE KATQAAVDQLHKNSHEVSSRDQIAQVASISSASKEIGDLIAEAMEKVGNDGVITIEDSRG IETELSVVEGMQFDRGYLSQYMVTDNDKMEADLENPYILITDKKISNIQDILPMLQEIVQ QGRSLLIIADDVTGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKEQLADIAALTGGTVIS EDLGLELKDTQLSQLGQARRVTITKDSTTIVDGSGAKEAIQERVDTIRKQIEDTSSDFDK KKLQERLAKLTGGVAVIHVGAATETELKERRYRVEDALNATRAAVDEGYVAGGGTALVNV EEAVKATKGDTADEQTGINIVARALTAPVRQIAENAGQEGSVVVDHLRKVDPEVGYNAAE DKYVNMIDEGIIDPTKVTRSALQNAASIAGLLLTTEAVVAEIPEDKPEAAPAQPGMM >gi|300497847|gb|AEAT01000001.1| GENE 4 6506 - 6790 247 94 aa, chain - ## HITS:1 COG:lin2175 KEGG:ns NR:ns ## COG: lin2175 COG0234 # Protein_GI_number: 16801240 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Listeria innocua # 1 94 1 94 94 103 60.0 1e-22 MLQPIGDRVIVEVKEAEEQTVGGIVLASNAKEKPIQGKVVAVGGGLYAEDGSKLPMTVQE GDEVLYDKYSGTKVKYEGKEYLVLHEKDILAIVK >gi|300497847|gb|AEAT01000001.1| GENE 5 6946 - 7632 1061 228 aa, chain - ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 1 208 2 209 215 256 58.0 2e-68 MNNKFRIPKATAKRLPLYYRYLLLLNDEGKDKVSSTELAEAVQVDSASIRRDFSYFGALG KRGYGYDVKNLLSFFKKILNQDTLTNVALVGVGNLGHALLNYNFKRSNNIRISCAFDINP EITGKITQGVPVYSMDEMKQQIADQQIQIAILTVPQATAQKTADEMIEAGIKGIMNFTPI RLSAPNGVRIQNVDLATELQTLIYFLDSDEMIKKQLEERKKAMNNTNK >gi|300497847|gb|AEAT01000001.1| GENE 6 7925 - 9841 2653 638 aa, chain + ## HITS:1 COG:L73239 KEGG:ns NR:ns ## COG: L73239 COG0488 # Protein_GI_number: 15673044 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 638 1 635 635 519 43.0 1e-147 MIIAQGHNLEQRFGAAPIFSKVNFSIENNARIGLVGPNGAGKTTLLKIMTGRQEASQGEF TVNKGIELGYIAQEHDFDEEKSIWEEMLTVFQPLIDQGQQLEKLQYAIADHPEDEDLLRR LDQAQYNFEQAGGYTYQAEIKSMLNGFNFPEATWNKQIASLSGGEKTRLSFVKLLLKKPP LLLLDEPTNYLDLDTLDWLEAFLKNYPGAILTVSHDQYFLDHLATQIFELQHGELTVFKG NYSQYLAQRELRDQQQEATYEKQQEEIKREEEFIQKNIVRASTTKQAQSRRKALEKMELV DPPKHKSKVRIKFDSARPSGKEVLILKDLAVGYPDKTMLKDISFQINKGDRVAIIGQNGI GKSTLLKTVMKQLPVKSGAIKYGASLDIGYYDQELQGIDYSKTVIDTIWDRHKDMNEKDI RSILASFLFTAKDIDKQVSQLSGGQRARLTLTVLSMEHNNFLLMDEPTNHLDLDAKEVLE KALADYDGTLLFVSHDRYFINELANKIVVAKDGQAKIYEGNYTYYLNEKAKEEAAAQETA AQEAPVVKAVSESKFSYQEQKKRDSEKRKLERQVAQAEKDLEELEAKEQEIQEAMADPAI AADFSKLGPLQEDLTAVQEKISQVSQAWEDASLALEEF >gi|300497847|gb|AEAT01000001.1| GENE 7 9908 - 10948 727 346 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229879751|ref|ZP_04499249.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Slackia heliotrinireducens DSM 20476] # 9 341 440 781 781 284 45 1e-87 MKEKKDIRILAFESSCDETSTAVVKNGSEIESLVVATQIKSHARFGGVVPEVASRHHIEV ITQITREALEEAKVSWEDLDAIAVTHGPGLVGALLIGINAAKAASMATGLPLIGVDHIMG HISAAQLVEPVEYPALALQVSGGHTEIVLLKDPTHFEIVGDTRDDAAGEAYDKIGRVLGV NYPAGKTIDQWAHQGKDTFGFPRAMIDEDNYDFSFSGLKSAFINTCHHADQLGQELDKYD LAASFQAAVVDVLAEKTMRAIRQYQPKTFIMGGGVAANLGLRERMNKEIAALEKAPKVIL PPLKLCGDNAAMIGAAAYNQYLAGNFADLTLDADPSMELPYAEDYK >gi|300497847|gb|AEAT01000001.1| GENE 8 10951 - 11481 220 176 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|118476007|ref|YP_893158.1| SSU ribosomal protein S18P alanine acetyltransferase [Bacillus thuringiensis str. Al Hakam] # 27 168 9 146 150 89 34 2e-17 MGLFFKADLVLFAPRAISISGHEYCLKKAEAGELARLLLLEKEVYAGRLPWDGEVFAEEL RRRDSLYLLLLEGDFLVGAIGCRFSLSKAHITFLAVMPKEQGQGIGSYLVKTVLDLSKSA DLKAVTLEVRVENKKAQELYRQIGFEDNFVRKNYYDNDDRPDSDGLNMICHLRKKN >gi|300497847|gb|AEAT01000001.1| GENE 9 11486 - 12208 501 240 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 43 230 2 191 380 197 55 6e-50 MKILSISTATSDLSVALNEADHLVSEKIEENQRNHSVDLDPDIASLLAESGLSLKDIDRF AVAIGPGSYTGLRVGLTTAKMFASILNKELVGVSTLQALAQNFAGEDALIVAALDARSKN FFAGAYRGKEAVIADGHYHLSELLEQVGALPDQRVIFVGSDFSKYQEEIAAGLADKDLRL AEGKENLLHAGAIGRLAVSAPVLDPDQAVPNYLRRTQAEYDWAKKTGQEFEADSAYVEEV >gi|300497847|gb|AEAT01000001.1| GENE 10 12226 - 12756 708 176 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1533 NR:ns ## KEGG: LDBND_1533 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 176 1 176 176 293 98.0 2e-78 MKSESKVSSKLELRELVLLAMVIAIKVVLGQFKVGDATLQVGLGFIGSVMLGYLFGPWWG FAGGALSDLVSSAIFGNLGGFFIGYTLTAALGPMIYGFFLYKKPIQIWRVIASVICVTVI CNIGLNTLWVSMMYGTNFMVALSSRILKEMITPWIQMVVVWFILEGLSRVKLSRKF >gi|300497847|gb|AEAT01000001.1| GENE 11 12799 - 13548 930 249 aa, chain - ## HITS:1 COG:SP1408 KEGG:ns NR:ns ## COG: SP1408 COG3884 # Protein_GI_number: 15901262 # Func_class: I Lipid transport and metabolism # Function: Acyl-ACP thioesterase # Organism: Streptococcus pneumoniae TIGR4 # 17 244 19 242 245 119 31.0 5e-27 MRYYKDYQLEYADCGESGQLKLPRMIDLMMESSEGQLAPTLGGASAMKELGRGWVVTQYE FEFTSLPRAGQKVRVWTEAVGYNRFLSYRDFGIEDEAGKDLVIAHSQWVLFDLKSRKLLP SDDKIAEELGAPLLAKIPRFKKLRPKDDYKDEKVYRAYYYDLDSNHHVNNAHYLDWIVDS LPRDFVNSHEPKDLAIKFEKEIKYGDEVACQVMQETEGSAVKTCHAITRQGELMALCEVN WKKMCFNRD >gi|300497847|gb|AEAT01000001.1| GENE 12 13545 - 14408 1097 287 aa, chain - ## HITS:1 COG:lin0210 KEGG:ns NR:ns ## COG: lin0210 COG0313 # Protein_GI_number: 16799287 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Listeria innocua # 1 283 2 291 293 258 45.0 1e-68 MQTQHSYADDQQGKLYLVPTPIGNLEDITIRAKRILEESDYIAAEDTRTSGIMLDRLGIH NKMVAFHKFNSKEKAPELVKLMQEGATIAEISDAGMPVISDPGYILVQECIKSNVPVVPL PGPSAFATALIASGFDGQPFTYYGFLPRKASQQRPFLEEINASRATSIFYEAPHRLLKTL EQMVEVLPGGRQVVCARELTKIHEEFVRGSLEEVIQHFKEVDPRGEFVVLVSPNTEEKTL DWADLVKLVKEQVAQGVSKKDAIKQVAKSQGVSKNELYDRYHQEGAK >gi|300497847|gb|AEAT01000001.1| GENE 13 14408 - 14740 320 110 aa, chain - ## HITS:1 COG:BH0046 KEGG:ns NR:ns ## COG: BH0046 COG4467 # Protein_GI_number: 15612609 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 4 101 7 114 116 60 30.0 6e-10 MDPYTKLQQLQQQMERMLKSMDSLQQEVLESLKENTELKVENQLLREKLDKLTVKEHEGK SQSGMAMLKQIYQSGYHICNMYYGTHRDPSADCMFCLDILDNFGKKAVHK >gi|300497847|gb|AEAT01000001.1| GENE 14 14755 - 15627 1076 290 aa, chain - ## HITS:1 COG:lin0205 KEGG:ns NR:ns ## COG: lin0205 COG0470 # Protein_GI_number: 16799282 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Listeria innocua # 23 184 26 188 330 106 38.0 6e-23 MLDLKQIGASESRQLKQAQDRGQLSHAYLLLSSDEAEALNTAYWLICYVNCTGEKKPDGT CPACRRILAGNHPDVFLIDTEENKQSIAIDQIRPLKQELAKSPLEGDRRYFVINHAQKLT LPAANAMLNLLEEPAAPVVTFLIANNGGQILPTIKSRTQIINFSQQAASSKDRLLLANGM SQEEVDQVKGSQEVDQAVKYFYQELREHDSLAIVSAHQLAGLVKKQKQGTKAWEKYVWIL LKKWGEKDLEKGDYQEAANFLADLMRVDQMRQSNVGFLNNLDYLALKWQQ >gi|300497847|gb|AEAT01000001.1| GENE 15 15627 - 15953 469 108 aa, chain - ## HITS:1 COG:lin2840 KEGG:ns NR:ns ## COG: lin2840 COG3870 # Protein_GI_number: 16801900 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 108 1 109 109 112 51.0 1e-25 MKLIIAIVQSEDAKRLQAAFVDNNVGATKLASTGGFLREGNTTFLLGVEDEDVDGVLKLI EEHSQTREETINPGIHPGISFEQPIEPVNITVGGATVFVLPVDQFLHF >gi|300497847|gb|AEAT01000001.1| GENE 16 15965 - 16603 735 212 aa, chain - ## HITS:1 COG:L3846 KEGG:ns NR:ns ## COG: L3846 COG0125 # Protein_GI_number: 15672380 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Lactococcus lactis # 1 212 1 211 211 197 49.0 1e-50 MQGYFITFEGPDGAGKTTVINEVVKAIQGQCKREILVTREPGGSKIAEKIRDIILDPANT EMNAKTEALLYAASRSQHVSEIINPALKRGDLVISDRFVDSSLAYQGQGRGLGIDEVAQI NAFATGYLEPDLTIFLDLDPAQGLARIAKVRSGSEDRLEQEKLSFHEEVYRGYQKVNQAH PDRVKVVDASQDLPQVVAASVKLMKSTFPELF >gi|300497847|gb|AEAT01000001.1| GENE 17 16733 - 16969 407 78 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1540 NR:ns ## KEGG: LDBND_1540 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 78 1 78 78 125 100.0 7e-28 MSKHSDKIKQAEDEKLMALVEKLQQEISLSNGLDNMTLDMSDDNIVADKILRAEYAFLYD EARYRHASYTGVTNAISQ >gi|300497847|gb|AEAT01000001.1| GENE 18 16971 - 17528 637 185 aa, chain - ## HITS:1 COG:L0265 KEGG:ns NR:ns ## COG: L0265 COG0353 # Protein_GI_number: 15672322 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 2 185 16 198 198 247 64.0 7e-66 MKLPGIGEKTATRLAFYAMDMPKEDVDEFAQALVDVKEKLRQCSVCGNITEQDPCAICSN PTRDRSTIMVVEEAKDVMAFENMGEYDGLYHVLHGVLSPMDGIGPEQINIKSLIVRLQKN DAAKEVILALNSTPEGESTAMYISRLIKPAGLKVTRLAAGLAVGSDIEYANLITLKRAVQ GRTEL >gi|300497847|gb|AEAT01000001.1| GENE 19 17572 - 17901 601 109 aa, chain - ## HITS:1 COG:L122849 KEGG:ns NR:ns ## COG: L122849 COG0718 # Protein_GI_number: 15672102 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 13 108 2 97 99 98 61.0 4e-21 MSKRPAFPGMGGMNMQQMMKQAKKLQEQMAQEQENITTQEFTGKAADDMVVATFTGDRTL KSLFIKPEAIDPDDPDMLEDLVIDAVNKGLKQIDQATQQSLGKYTKGLM >gi|300497847|gb|AEAT01000001.1| GENE 20 17973 - 19796 2340 607 aa, chain - ## HITS:1 COG:lin2852 KEGG:ns NR:ns ## COG: lin2852 COG2812 # Protein_GI_number: 16801912 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Listeria innocua # 1 570 1 560 579 380 39.0 1e-105 MAYQALYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAK ALNCLNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNNSVDEIRDLLDKVHYAPTEGKY KVYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSN EAMVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDALEV TGFAAQEQVEKLLLALLNGDSQTALDLAKSAIQDGASAQNILNEIISLTIQAMLFTKTGQ GEFLTDDFAQEIAQQSPDRFSQIIDQANDALGSLRFTNQQQIPLEVFLVQASQKRQNSQA GPQVASAASNPAIERQIKALKEQVHQLTQQVQQLSQRPSQAFSPRHVFQLNQQLYTQKGG ATEVAQQAAEKQQQAESLQAEITSSQEEIYAVLSQATKPGLAEARNLWDRDLPSMLEEPG KTVLGFLQPIAASDRAVLLSSQSRAWQLATNPQEFLATLKADLDQLTKESWTIAIVDEKA WPKIRQEFIKEHASQLRAKAQPEEAQPAEEAAPEPPLPDQAPPEEAADDAIVAKAEELFG PLAQVKD >gi|300497847|gb|AEAT01000001.1| GENE 21 19951 - 20466 589 171 aa, chain - ## HITS:1 COG:lin2867 KEGG:ns NR:ns ## COG: lin2867 COG0590 # Protein_GI_number: 16801927 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Listeria innocua # 6 157 2 152 154 158 51.0 4e-39 MYSSEEKKTYMEAAFAEAEKARRQDEVPIGAVVVGPDGQIIGQGYNRRELDEDGTAHAEI LAIKEACQKLDSWRLIDCSLFVTLEPCAMCAGAIINSRIKEVYFAAMDPKAGAAGSVVDL FSVEKFNHHPKVIRGLYKEQGAQLLKDFFREIRRKQKLAKKSPGKLPKGLV >gi|300497847|gb|AEAT01000001.1| GENE 22 20467 - 21069 844 200 aa, chain - ## HITS:1 COG:SP0841 KEGG:ns NR:ns ## COG: SP0841 COG2813 # Protein_GI_number: 15900728 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Streptococcus pneumoniae TIGR4 # 1 200 1 196 196 194 52.0 9e-50 MAEQYFTENPTVDHDEHHVNYHLNGINLNLTTDAGVFSKNRVDYGSGVLIEQMLDQELPG GNILDVGCGYGPIGLFAAKKWPGRQVDMVDVNERAMDLARRNAAANGADNVNIFASDRYQ EVSGQYAMIVTNPPIRAGKAIWSSILSEAKDHLTDGGILLVVIQKKQGAPSAKKLMAASL GNCEILTRDKGYYILKSVKK >gi|300497847|gb|AEAT01000001.1| GENE 23 21071 - 21586 846 171 aa, chain - ## HITS:1 COG:lin1954 KEGG:ns NR:ns ## COG: lin1954 COG2065 # Protein_GI_number: 16801020 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Listeria innocua # 1 170 8 181 183 189 58.0 2e-48 MDEAGIRRALTRMSYEIVERNQGTENLVLIGIKTRGWYLAQRIGDRLAKIEDSQLPVLSL DISAYRDDLSQEEKAKAIASFDTSFDLTGKTVILVDDVLYTGRTIRAALDAIMDQGRPDK IALAVLIDRGHRELPIRPDFIGKNIPTAASEDVQVQVSEIDGTDAVKISEA >gi|300497847|gb|AEAT01000001.1| GENE 24 21693 - 24560 3630 955 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1547 NR:ns ## KEGG: LDBND_1547 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 955 1 955 955 1866 99.0 0 MSRLNSYFYDIESLTNAFTLSCYRPDDQRVDIYYLVDDPALNDKDSLDFKKSAARRIREK NQNFKGEIYYYNLCSSAASARLAQTFGVSDAQYVNDPQAPSSFPGQFRPVCDTDAGYQEE EAPYLMGYNSSNYDLTMLAYYFTRAWQPGESGKRDRFSAVTAREMRDFNDELFSRYIGNM RLRLWQDKTMGLVAKNFQMSGRHIDVAQLNERQRRVGLKRLLGMLGWQILESDKLKPGQD YLTSPEELADLIAYNVSDVVNLKELFCHPYYQGQFILKKGLLGQYPDLIYQEDEDSYQAK IGPAFVRKDRLTIDSSSANFARRTICPYGRLKDDRAVSFLYPAASVAEKTGEKQRDILEE SRDFFYKLFEDENLRKKFDRVYDYYKQFAGKNFNPSKEYREDYGDQALPVSDLSDVENED TNLFYYQKDGQPSTCYITFSVGGLHGSEYNRDLYLKDHALWEKKQADLAYVQKLYPDPLD LRKAREVTLPDGRVEKYQTFLTAKATIKLMEQTDPADRGQFWRDFSQDEPTVFKKQGSRV RLDDRYAFTSSDLTNHEDFTSYYPNMLRRLNAFYNDRLGEDRYTAIFERKQELDKKRTDP QYSDEERRMFNIEREGTKLILNSATGAADPREGQVPSSIRMNNRIRSMRIIGQLFTYMIG QAQTYAGARIVSTNTDGLYSVLDADLNRKILAKEAAEIGVEIVPEELYLVSKDSNNRLEA SPDLTKILSASGSLACRKDTSPTKSLAHPAIIDWALSRYLLEKRTDLAAPFDRDLGRQIL AEAEEAFPDPAHRLRMFQNVLSANHSKERANCIFGRGDAGQLLILQRYNRVFIYQDGLPK TVHLYSAAAKKLTPAMLNKRKKSGEAVIQHDQEALSVLKANGLGNLAKGREATVQKIPNL SPDWSMHVENRAVNLLQAEEQEAILHSLDYDKYLDLVASAYEKNWRNLTTSGPVL >gi|300497847|gb|AEAT01000001.1| GENE 25 24617 - 24895 172 92 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1548 NR:ns ## KEGG: LDBND_1548 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 92 1 92 92 142 100.0 6e-33 MTKSKASKAYRRARRSRLLACPSGKRAFKTKFDADLFLYQEEVTVHLREINHEHWRQMPI RAYRCPYCKNYHVTSMSLERYEQLHGRTRERT >gi|300497847|gb|AEAT01000001.1| GENE 26 25116 - 26327 2328 403 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1550 NR:ns ## KEGG: LDBND_1550 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 289 403 2 88 111 81 56.0 6e-14 MRKLTKSVVTALSLATATLSVIPQAAAPAEAATQTKTSKEYVNGSYTVAASFYDSGSKVY STEASFLTAAAAKVTIKSKKISSVSFTLAKDSPVYSDLTINGSKAKTSTGKDGSVTYTFA AGAYQTSSKAATFTVNGSKFSADVVFGALPSSAFVTVTETSAVVKKKVQKTSAVYNRDGA KTKYKSIKAGKTITTYGTLTRGTTKYYKLSKTASKYIKASNVDGRYITLKNSAAVYTQDL KKTKTSYKKGKKVYAYAYAILGGEKYYKLGTNKYIKALNADGRYITVKHGAAVYSKDLKK TGSSYSEGKKVLTFGRTTLSNKKKYYQVDQNKFIVASNVDGTTRTLKKNAYIYKKSKGKA VRYKKYVLKKNSKRKTYGSAVSIKGKKYYIISVGQYVVKSNFR >gi|300497847|gb|AEAT01000001.1| GENE 27 26459 - 27217 838 252 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300811145|ref|ZP_07091657.1| ## NR: gi|300811145|ref|ZP_07091657.1| hypothetical protein HMPREF9264_1885 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] hypothetical protein HMPREF9264_1885 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 1 252 1 252 252 363 100.0 4e-99 MKKLTKSLVTALSLATATLSVIPQAAAPAQAATKAKSKTGTEYKDGSYTVMVTVKNLGNN IDVPNNFFSAATVTIKNHKISSVAISVDDIDDAGLYYVQVNDEVAIGDQKTLTFDGSVYK NGLQNASINISGDPSYCNITFGDLPSSAYETVTETSETAKKVVKRTAAVYDRNGKKTKDT ALKAGKTINTYGSLTRGSVKCYKISKTTNKYVQSADVDGRYITLKNAAAVYTQSLGKTGT SYKKGKKVYAYA Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:02:55 2011 Seq name: gi|300497837|gb|AEAT01000002.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00043, whole genome shotgun sequence Length of sequence - 10129 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 5, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 117 - 320 245 ## Ldb0865 hypothetical protein - Prom 349 - 408 3.2 - Term 389 - 428 3.5 2 2 Op 1 16/0.000 - CDS 443 - 1828 2031 ## COG0165 Argininosuccinate lyase 3 2 Op 2 . - CDS 1864 - 3090 1953 ## COG0137 Argininosuccinate synthase - Prom 3160 - 3219 3.0 + Prom 3555 - 3614 6.6 4 3 Op 1 . + CDS 3658 - 4260 637 ## COG0583 Transcriptional regulator 5 3 Op 2 . + CDS 4242 - 4583 359 ## LDBND_0787 transcriptional regulator (LysR family) 6 3 Op 3 . + CDS 4602 - 5507 1083 ## COG0583 Transcriptional regulator + Term 5509 - 5563 11.6 - Term 5503 - 5541 10.2 7 4 Op 1 . - CDS 5674 - 6093 555 ## LDBND_0783 hypothetical protein 8 4 Op 2 . - CDS 6129 - 8555 2952 ## LDBND_0782 hypothetical protein - Prom 8605 - 8664 5.5 9 5 Tu 1 . - CDS 8910 - 9815 1186 ## COG0583 Transcriptional regulator - Prom 10028 - 10087 4.3 Predicted protein(s) >gi|300497837|gb|AEAT01000002.1| GENE 1 117 - 320 245 67 aa, chain - ## HITS:1 COG:no KEGG:Ldb0865 NR:ns ## KEGG: Ldb0865 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 67 1 67 67 99 98.0 4e-20 MGESKEDKRMRAKWESLSGAEKSEFKKNYAMRRGITIDFIRRWVWNEGDLDNLEYHIAER RKKFREF >gi|300497837|gb|AEAT01000002.1| GENE 2 443 - 1828 2031 461 aa, chain - ## HITS:1 COG:BH3186 KEGG:ns NR:ns ## COG: BH3186 COG0165 # Protein_GI_number: 15615748 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Bacillus halodurans # 1 449 1 449 458 480 54.0 1e-135 MKKMWAGRTSGKTDQIADDFNSSIRFDQRMYPEDIAGSIAHAKMLAKQGIIPEEASAKII AGLEGILADLNSGKLEIDPAAEDIHMFIEETLTDRIGQDGKMLHTARSRNDQVALDIRLY MREENGQIKQLLKDLVAALCDQAEKYKASLMPGYTHLQRAQPVTFGHQLMAYAYMFMRDL ERLGQMEERMNYSPIGSCALAGTTYPIDRVYEAELLGFKAPVANSLDGVSDRDHVVEDLS DLALVMMHLSRLSEELILWSSWEFHFVRLADAYTTGSSIMPQKKNPDMAELARGKTGRVY GDLMAILTTLKGLPLAYNKDMQEDKEALFDAIDNVELCLETFIPMIKTLEANEKGMHQAA QKGFINATDLADYLTKKGMPFRDAYHISGQLVALCIDQDTVLEDLPLETYKGYSDLFEED LYQAIDLHNCLAKRTSLGGPTPESVQKQVDEVRGKIAEEEN >gi|300497837|gb|AEAT01000002.1| GENE 3 1864 - 3090 1953 408 aa, chain - ## HITS:1 COG:CAC0973 KEGG:ns NR:ns ## COG: CAC0973 COG0137 # Protein_GI_number: 15894260 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate synthase # Organism: Clostridium acetobutylicum # 9 408 3 400 400 436 58.0 1e-122 MNIDKSKIKKIVLAYSGGLDTSVIIPWLKENYNNPEIIAVSANVGQGDELEGLEEKAKNS GAAKLVVANLEEEYVNDYLLPCLKADAKYEGYLLGTANARPLIAKALAEVAIKEGADAIA HGATGKGNDQVRFELGIKHFAPDMPIIAPWREWDLVSREDEIDYAAAHNVPLRISKETNY SKDKNLWHLSHEGLDLEDPSLEPTYEKPGFLEMGVSPLDAPDKPTYLQLDFEKGVPVALN GQEMPLMEMLEKLNKVGGENGIGLLDLVENRLVGMKSRGVYETPGGSILYFAHEYLETIT LDKQVQHKKSELAITYGELVYDGQWFTPLREALAAFVDKTQECVTGTVKLKLYKGNIIKA GVTSPNSLYSTELATFDESDYDQAEAAGFINLFGLPIQVQAKLDAKKK >gi|300497837|gb|AEAT01000002.1| GENE 4 3658 - 4260 637 200 aa, chain + ## HITS:1 COG:PA5029 KEGG:ns NR:ns ## COG: PA5029 COG0583 # Protein_GI_number: 15600222 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Pseudomonas aeruginosa # 1 137 1 137 301 83 34.0 3e-16 MNTDKIKIFLDLAESLNFSRTAQNMNITQSAVSQSISSLERYLNTKLFYRSRKEVNLTPA GQLFYQGMQPVITQFNKAVTHAREVAQSVNTLLTIGFSGSGYDRYAINQLIHEYRKVRPE VKIFLENYDHRTMVARLKQGFCDVILTGPESIDSGITLTYDKLLEGRFYAVCSKNYCYMG NSPVTMKDLSKERRICLRSA >gi|300497837|gb|AEAT01000002.1| GENE 5 4242 - 4583 359 113 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0787 NR:ns ## KEGG: LDBND_0787 # Name: not_defined # Def: transcriptional regulator (LysR family) # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 113 189 301 301 236 99.0 2e-61 MSKERLIFLDNSWCLPKQNSLQNALSRDLASLDYAVANNMADYTQMISAGLGIGICADFV VDPSDDQLELFPLEKEVTDEIGIVTLKDRKSPAADFIAWVKERGLPATHPVTK >gi|300497837|gb|AEAT01000002.1| GENE 6 4602 - 5507 1083 301 aa, chain + ## HITS:1 COG:ynfL KEGG:ns NR:ns ## COG: ynfL COG0583 # Protein_GI_number: 16129553 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 268 1 269 297 102 30.0 8e-22 MNTEHLAIFINLAETLSFSGTAMNMGVSQSAVSQTISSMERYIGADLFYRTRKKVSLTPV GKAFYEDIRPVHHNYVDTLRQLEALNEQARDKITIGISNSPYEIFALSKSIKAYQAENPK VQFYIESHNNRDLVGLLNEGALDIVFLSQDSLSPSANVKFKPLLTGKYCAVFHQDYDFAI RGSVKHSDLDKQRVIFLSDNICTPGQYSLQKILWQKLPHLKVTSANSINAAMLSIKAGLG IGILPNFLLPDQLKDLTVVPLSGKNEVNYGTAIPERTMSTASQDFYDWLEEGKLPAMHEL A >gi|300497837|gb|AEAT01000002.1| GENE 7 5674 - 6093 555 139 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0783 NR:ns ## KEGG: LDBND_0783 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 139 1 139 139 242 99.0 5e-63 MTDTQSMIAVQEKDNTVSSLVLDHDGDLETAGRILEENYQDYEQVLALVSLGDLKRLGKT AEESRAYYRDEHEDQLVLENYADTEVFDRATEEQGDYLACCFLYCKYEGDFQWLVRDFST GDKRFKPLKEALARKEERK >gi|300497837|gb|AEAT01000002.1| GENE 8 6129 - 8555 2952 808 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0782 NR:ns ## KEGG: LDBND_0782 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 808 1 808 808 1546 97.0 0 MARIIDTQRKLLIQHGLLEDIKEAGEEYGSLTAALAAPDWTLLDRELSPLFKQVKFCLLF GEEEVPELAAASELSRLFPLLASDCPDLKEKLAAGRLAVSFSPQKESNFFLLTGKDQYRF YWGQGATYFLSSGEKTGDDWAMVQQLVKELTAKARDILDREIYQGYLDLAEDKRSQYLLE VSGLADKMAEAPLKDFKEATRLGQLGQSQAGVSFKKTAKLLRFKSGIDKENLTGKKILAD EELSKRLSQIVFGEGNENGEAIVLPDEKAHYPRPLYLQDPVTGTILEKPAIDSYQEEPVA VQKPTRQDVSAIFDIIRFYRDRKQDNESQAAFSFLMYVLESGSIWKIRQAIDERNGIVED VPIVAGLVGQGETGKSTLLKIASNLTIGNTKEIVQASSEDKLFGMTAAVRKKLLAGKSLS KQDRVSAYSSNPKVINKNIWNFTDHYMDEDQVITPICIDDPEVSLFSSSAAQSFLKKRSN RHGEKLGVEPVAIFSMNSKGKDIELLTEVGRRGYVISQGNQFRKKTDADIHFFEYLDGNT DNHGHWLNNTLFLYLTRQIDRWLEEMDDEDYLKLKHDFLYPVKHAFWQLVEEYGLVNTET KYYIHMKNYNIVEDLGRRNWSILLHDEATLWEITFTRDNPECMIPARVFPNKGNDINRYF AYLPASAEICKTFDSQGLTVKMANMDLWQGNHLLTERYEKETGIAAERFEMEKARAAAEV QGQRMGENIAPYLKKNAEIMDRMMRVTEQNAQLLAEKEAQAEKQQQAEAEKKEQADQIQK LQDELAQAKEAAKSEEKKPRGFFDRFFK >gi|300497837|gb|AEAT01000002.1| GENE 9 8910 - 9815 1186 301 aa, chain - ## HITS:1 COG:lin0491 KEGG:ns NR:ns ## COG: lin0491 COG0583 # Protein_GI_number: 16799566 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 286 1 288 297 146 28.0 4e-35 MNFQHLEYFNELAETQYMAQAAEKLGISQPTLSYAVKKLEEELGVPLFEREGRNIRLTVY GKVFKEYSEAGVQQIQEGRRQLSEMALGESGKLSIGVAEIVAHKFITDVIKDYRQVNPEY RVDFNLKRAVTGKLLDMLQSGELDLAIVTTRPGEKIAGFDLVPMMHRKLELLLPAGHELA KQKSVSLKQIEQYPYLAFGEEHALAGIIADVFAKNDIHPQISSVTDDMRTLVDLVAIGEG VALLPKSKYHESAGAIAVPVTEDTSYTISLASRNLAQEPKVAQKMASFIVDFCQTRGLTW S Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:03:16 2011 Seq name: gi|300497826|gb|AEAT01000003.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00131, whole genome shotgun sequence Length of sequence - 7633 bp Number of predicted genes - 10, with homology - 9 Number of transcription units - 7, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 193 - 438 134 ## LBUL_0030 hypothetical protein 2 1 Op 2 4/0.000 - CDS 441 - 1208 1194 ## COG0390 ABC-type uncharacterized transport system, permease component 3 1 Op 3 . - CDS 1205 - 1843 253 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 1878 - 1937 3.8 - Term 1888 - 1930 9.3 4 2 Op 1 . - CDS 1946 - 2944 1367 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases 5 2 Op 2 . - CDS 2922 - 3368 227 ## COG1959 Predicted transcriptional regulator - Prom 3584 - 3643 6.4 - TRNA 3491 - 3563 85.2 # Thr AGT 0 0 + Prom 3553 - 3612 5.6 6 3 Tu 1 . + CDS 3818 - 4123 140 ## Ldb0026 two-component system, response regulator + Term 4152 - 4195 -0.1 - Term 4103 - 4130 -0.8 7 4 Tu 1 . - CDS 4284 - 4475 62 ## 8 5 Tu 1 . - CDS 4865 - 5086 109 ## BLJ_0926 major facilitator superfamily protein 9 6 Tu 1 . - CDS 5494 - 6327 352 ## LBUL_0019 XRE family transcriptional regulator - Prom 6439 - 6498 7.0 - TRNA 6522 - 6594 85.2 # Thr AGT 0 0 + Prom 6619 - 6678 8.5 10 7 Tu 1 . + CDS 6723 - 7427 948 ## COG1285 Uncharacterized membrane protein Predicted protein(s) >gi|300497826|gb|AEAT01000003.1| GENE 1 193 - 438 134 81 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0030 NR:ns ## KEGG: LBUL_0030 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 81 1 81 81 113 96.0 3e-24 MLEKHFTWLAEVLLIIVVSLVFITLHSLYYSYGMMIFGEHSAAATEMFWESEKLWSSIYT VAVIVIAVSTQIVRSFKRSKK >gi|300497826|gb|AEAT01000003.1| GENE 2 441 - 1208 1194 255 aa, chain - ## HITS:1 COG:STM0503 KEGG:ns NR:ns ## COG: STM0503 COG0390 # Protein_GI_number: 16763883 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Salmonella typhimurium LT2 # 6 251 6 251 259 265 58.0 9e-71 MKAIAVSDLSLILSFALVLVSVAISWKEKLGLTRDIFYSVGRAIVQLVIVGYVLKFIMQV NNALLTLLMTLFIIFNAAWNANKRDPNPNRQLWQSIMALLIGTYITLGVLLLTQTVKLKP MQIIPITGMIAGNEMVAMGLCYKVLATGFHDQRQQVLEKIALGADVKTASMTILRRSIKT AMQPTIDSAKTVGLVNLPGMMSGLIFAGVDPVYAIKYQIMVTFMLLSATGLGAVIAGYLS YRNYFNKRSQLREEQ >gi|300497826|gb|AEAT01000003.1| GENE 3 1205 - 1843 253 212 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 15 210 17 219 223 102 35 1e-21 MALIELKQVSYRAGDQEILQDVSFAVEEGDYLTLTGPSGSGKSTTLKLIAGLISPNKGEI FYKGQNLDSLDLVQYRRQVSYCFQQPTLFDETVKDNLALPFAIRKQDFAEKRAQEALKQV DLPADYLDKKITTLSGGEKQRVALIRNLLFRPEVLLLDEVTTGLDEESKRIVHQLIARVH QEGTTIVQVTHDQEELAASKQLLHMEKGGVLK >gi|300497826|gb|AEAT01000003.1| GENE 4 1946 - 2944 1367 332 aa, chain - ## HITS:1 COG:AGpA656 KEGG:ns NR:ns ## COG: AGpA656 COG0604 # Protein_GI_number: 16119675 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 8 332 33 357 359 181 32.0 2e-45 MQEAQLIKYDSKNPIIKLTTAEAKAVGDHDLLIESKVAAVNPLDNLLAHGDLKLVVPYKL PQTLGNEFVGIVKQAGSAVKNFQAGDRVYARTPLDNMGAFAEEIVISEQAVAKVPDYLTD EEAAAVPLTALTAMQAFDLLEAKAGQTLFISGGSGSFGAMAIPLAVARGLKVITTGSGAK KEELLALGVSQFIDYRKEDYTKLVKDVDLVIDTLGGEELFKQMEILKKGGRIVSLRAMPN RTFAKRMGMSLGKQILFGSAAAKIERQAKKKQQHYDFIFVEANGSQLAQASEILAKSQVR PALGKRYSLDQVKEAMEDVAHGHSRGKVLIKF >gi|300497826|gb|AEAT01000003.1| GENE 5 2922 - 3368 227 148 aa, chain - ## HITS:1 COG:BS_ywnA KEGG:ns NR:ns ## COG: BS_ywnA COG1959 # Protein_GI_number: 16080716 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus subtilis # 1 134 1 132 133 97 40.0 9e-21 MRDTKYTVAIHILVMLATSPRDLNSDDLARSVGTNASYIRKVMALLKDHGIIASQRGKSG TRLLKRPEDLSLLEIYQAVNGDDVEIFQIHQNPNPTCPVGKNIKEAVFPFLDEAERQLKE TLAKDSLADVIDRLKQAAEETDAGSTTD >gi|300497826|gb|AEAT01000003.1| GENE 6 3818 - 4123 140 101 aa, chain + ## HITS:1 COG:no KEGG:Ldb0026 NR:ns ## KEGG: Ldb0026 # Name: not_defined # Def: two-component system, response regulator # Organism: L.delbrueckii # Pathway: Two-component system [PATH:ldb02020] # 8 100 166 258 260 155 82.0 4e-37 MLLTKGQAEVPVFQIWNQPFKTLRVYAKNKVFDCLGTLKDYEKRYPSLVPADRQSLINLD AVQNYDEKKGIAYFDQGVVHSVAVRRRRSIMLKLNATKKEP >gi|300497826|gb|AEAT01000003.1| GENE 7 4284 - 4475 62 63 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSFLGIVVSGIFNANNTYLILPVFLIVMQIVAELFNIRFKCNKLRGAITEHCRTNDIWRI CRI >gi|300497826|gb|AEAT01000003.1| GENE 8 4865 - 5086 109 73 aa, chain - ## HITS:1 COG:no KEGG:BLJ_0926 NR:ns ## KEGG: BLJ_0926 # Name: not_defined # Def: major facilitator superfamily protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 69 87 155 395 86 65.0 3e-16 MLLWLIVRGNIGFLIFMTLFGIIDRSAASLTRSLIVMPLSKEKASILMGNMALPTNLGYG IGAGISGIISFLS >gi|300497826|gb|AEAT01000003.1| GENE 9 5494 - 6327 352 277 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0019 NR:ns ## KEGG: LBUL_0019 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 245 1 245 245 436 96.0 1e-121 MKIGEALRKKRLELGLTQQEMCEGILSRPFYAKVESGKNRINAESLFKILFARQIDLVEF GKLVQGTYDSAENKDEKRYQSQMNVAVSTKDLKLMKKYCQDIIESSNDEILQLRALVALA YFKGELGGLSKEIRVKIKEKFDEGRNWTKRPELLGLLANTMLLWDQDDLNYWIGDLLKKA KKEAVSDLILERYLRLFENYLVICYERKADGKEYQKNRVDEVIKYIISVTAPFQLMIYRI TALYLHALLTDQKGKAQKIKKDMEAYGYGNAIASWPE >gi|300497826|gb|AEAT01000003.1| GENE 10 6723 - 7427 948 234 aa, chain + ## HITS:1 COG:CAC3658 KEGG:ns NR:ns ## COG: CAC3658 COG1285 # Protein_GI_number: 15896891 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Clostridium acetobutylicum # 10 229 5 229 229 153 37.0 2e-37 MEKFTGIPVSFQLVWLLRILLSAFCGGLIGSERATQRKSAGLHTHVVVAIASTLFSIVSK YGFYDMLTFSNVSYDPSRIASLTVTGISFIGAGTILVHKEQISGLTTAAGLWATSAIGIA IGVGLYWVGIVAAVLLLLVQRFLREETVLNLLRKVRISLLIEASNTPHILETIQSELEKN EVHQLSIKIISVSDDHVLFSCDGEIAGRIDENQIIMNLRKYPDIKRITYSPGSK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:03:38 2011 Seq name: gi|300497811|gb|AEAT01000004.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00207, whole genome shotgun sequence Length of sequence - 16265 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 5, operones - 3 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 16 - 100 60.0 # Leu CAA 0 0 + Prom 18 - 77 80.3 1 1 Op 1 25/0.000 + CDS 258 - 1427 1611 ## COG0438 Glycosyltransferase 2 1 Op 2 4/0.000 + CDS 1420 - 2469 1755 ## COG0438 Glycosyltransferase 3 1 Op 3 . + CDS 2462 - 3475 1297 ## COG0392 Predicted integral membrane protein 4 1 Op 4 . + CDS 3494 - 5566 3043 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily 5 1 Op 5 . + CDS 5636 - 5854 179 ## LDBND_1709 preprotein translocase subunit SecG + Term 5862 - 5902 3.0 6 2 Op 1 10/0.000 + CDS 5921 - 8290 1329 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 7 2 Op 2 . + CDS 8313 - 8774 694 ## COG0691 tmRNA-binding protein + Term 8775 - 8810 4.2 + Prom 8822 - 8881 5.4 8 3 Tu 1 . + CDS 8921 - 9088 218 ## LBUL_1699 hypothetical protein + Term 9111 - 9147 4.0 + Prom 9213 - 9272 3.8 9 4 Op 1 2/0.000 + CDS 9353 - 10687 2256 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases 10 4 Op 2 3/0.000 + CDS 10732 - 12615 2822 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 11 4 Op 3 . + CDS 12699 - 13481 767 ## COG1737 Transcriptional regulators 12 4 Op 4 . + CDS 13481 - 13981 698 ## Ldb1824 hypothetical protein 13 4 Op 5 . + CDS 13987 - 14475 730 ## COG2190 Phosphotransferase system IIA components + Term 14575 - 14616 10.2 - Term 14607 - 14635 1.0 14 5 Tu 1 . - CDS 14636 - 15154 529 ## COG2153 Predicted acyltransferase - Prom 15234 - 15293 5.7 + SSU_RRNA 15703 - 16264 99.0 # LBARR16SM [D:1..1512] # 16S ribosomal RNA # Lactobacillus delbrueckii # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Predicted protein(s) >gi|300497811|gb|AEAT01000004.1| GENE 1 258 - 1427 1611 389 aa, chain + ## HITS:1 COG:SPy0516 KEGG:ns NR:ns ## COG: SPy0516 COG0438 # Protein_GI_number: 15674620 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 373 1 376 444 353 48.0 4e-97 MNIGLFTDTYFPQNSGVATSIKTLKEALEAQGHNVFIFTTTDPNVDKDTVEANIFRFSSV PFIGFSERRIAFRGLFEAVKVAKEVNLDIVHTQTEFSMGLIGKYVARQLGIPAIHTYHTM YEDYLHYVLNGHLLRPVHVQQFTKSYLKNMDGVIAPSQRVAALLARYGVEIPMRVIPTGV DLDAISGPEKANLREKLGIAPDAQVIITLGRVAAEKKIDRILRVMPDLLTEFPKLVFVIA GDGPDADVLKEQVERLTLEDHVIFAGNIPHDRVASYYKMADFFVSASDTETQGLTYIEAL GSGRKCVVYKTDYTDQVFNDPAYGLTFESLRQMKEEIAAYLRQGRQEIPPQLLAKKLEEI SASHFASEVCKFYQYAIDNYQVKKEDSND >gi|300497811|gb|AEAT01000004.1| GENE 2 1420 - 2469 1755 349 aa, chain + ## HITS:1 COG:SP1075 KEGG:ns NR:ns ## COG: SP1075 COG0438 # Protein_GI_number: 15900944 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 6 342 1 338 338 352 50.0 6e-97 MIRINMFSQADSVAGQGVGAAYLELIRLLRTHLVDDFYVTINKYGRSDLTHYHTINPTYF ANSFSPARGRKIGYVHFLPDTLEGSIKLPGVAKKVFYQYVIDFYKRMDQIVVVNPIFIDK LTEYGLDRNKIRYIPNFVAKSEFYEQTQAKKNATRQELGIPQDKFVVFGDGQVQARKGVD DFAKLAEANPDYQFIWAGGFSFGKITDGYDHFKQLVENPPKNLTFTGIIDREKLVDYLNM ADLFLLPSFDELFPMSVLEAFSCGTPVLLRDLDLYRAIIDGYYLAGKDSAEMNEQLRFAA THPEVLARQQELSRKASQQYSEDHLAEIWRDFYQEQYQLGRELGQISYE >gi|300497811|gb|AEAT01000004.1| GENE 3 2462 - 3475 1297 337 aa, chain + ## HITS:1 COG:lin2698 KEGG:ns NR:ns ## COG: lin2698 COG0392 # Protein_GI_number: 16801759 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 3 324 6 326 357 165 35.0 1e-40 MNKKNLWGVLIVLLISSLVLYFDLRATPMATLKAAAGQIIPWRLVLVFLAMALSYVCEAL ILHLLAKRPGTAKRSFWSYLRIPLIQALFNGITPMATGGQPSQLAAMVEMGMAGGRATSI LMMKFICYQLVVLFAYLTAFIFGFHFVAGKFSALAIFIFLGFALHVFSIILLLLAMFAHN WTVKAVKKVMKLLGRIFGQERAQAWEKSTLEQVESFYKESQALKAEKKKLWGVVLLTVGQ LLCYYSAPYLTLRALGQPVDYVQVTLMTILIIMFMAVIPLPGASGGAEFSFQTLFASFIS QQGVVVLAMFLWRFATYFFGMILGIFGWSFKPAKLRD >gi|300497811|gb|AEAT01000004.1| GENE 4 3494 - 5566 3043 690 aa, chain + ## HITS:1 COG:BS_yfnI KEGG:ns NR:ns ## COG: BS_yfnI COG1368 # Protein_GI_number: 16077793 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Bacillus subtilis # 2 652 9 653 653 573 49.0 1e-163 MQKIKAFGTWLRTSKNGFFTLAVFGYWLKCYLIYLTKFTLGATGPMQGFLLLINPIPSGM LILGLGMLMKGRKSYWTMLVLDFLLATWLFANILYYREFSNFLSFSLLQNSGSASENLGK SIAGILKGSDFLAFADPLILLGLLLGKFFKMDLYAQSWKRKVGIELTALLLMGGNLLLAQ KDRSGLLTRTFDNNYIVKYLGINEYALYDGIKTVQTNAQMANAKVSDLSSVKKYLKANYV QPNSAYTGVAKGKNVIVIHLESFQQFLIGYKWKGKEVTPNLNKIYHSKHTLAFDNFFNQV GQGKTSDAELMLENSLFGVQSGSAMSTYGTSNTFESMPAILKQKGGYTSVVMHGGTGSFW NRNNAYKSFGYDYFASLNYYQYQNSWYLGYGLKDKIFFQQSAKYISELPQPFYLKMITVT NHYPYTLDKQNQSIKKTTTGDNTVDGYVQTAHYLDQAIGEFMTWLKKTGLDKKTLLVFYG DHYGISNNHNEAMAQLTGKKNYGEFDDQQQQRVPLMFYSSNLKGGIKHTYGGEIDVMPTL LNLLGIKSKGLILFGHDLLSKKNPQVVAQRNGNFITPTYTKVGSSYYYTKTGKKVTGAKE KKACRLIANQVLTQLTLSDRVVTGNLLRFYHPSWFTPVKTSDYDYNKTDSLKKLAEAGKS ETSLKSQLGKKDASSLYKTDAPELKKTKTK >gi|300497811|gb|AEAT01000004.1| GENE 5 5636 - 5854 179 72 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1709 NR:ns ## KEGG: LDBND_1709 # Name: secG # Def: preprotein translocase subunit SecG # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: Protein export [PATH:lde03060]; Bacterial secretion system [PATH:lde03070] # 1 72 6 77 77 90 100.0 1e-17 MTLLIIVSVLIIIATMMQPQKQQDALNALSGGAVFSGQTKKRGFEAFMEKVTSVLLVLFF AFSIILAILSSK >gi|300497811|gb|AEAT01000004.1| GENE 6 5921 - 8290 1329 789 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 11 726 7 703 730 516 40 1e-146 MAQNETVLAGVLEIFRHNPQKQFSVDQIERQARRDRLGNFTDLVKALAYLEQKKQIITDG NGRYQLAQENTEVEGVFRANDKGFGFVRLDDEEADDVFINSDATKLALDGDRVKVKITAG GNPWNGKGPEGQVEEILERGASSIVGEYTPLEDLQVKISHFAGYVISTNKKFKKYRVYVS ENGLIPQMGDMVKVSLKTYPTEDLPDQMTGAVVEIIGNKNDPGVDIMSIVAEHDIRTEWP EDALEQANAIPDHVTEEERHEAGRRDITDQPAVTIDGDDSKDFDDAVVLWKLDNGNYHLG VHIADVAHYVKEGTPLDREAFARGNSTYLVDRVIPMLPFRLSNGICSLNEGVDRLVLSCD MEITPEGERVSYDIYPALMRSHGRLTYNKVNQALRADVPDSDLEDKYVKVRPMLKGMAAL HEALYNQRHARGAIDFEEPEAKIIVDEKGKPVDIVLHSRGTAEKMIESFMLLANETVAEA YYRKKVPFLYRVHETPEADRITRFFEFCSAFGLNVKADPNDIKPLDLQKVVTKTLGTPEE AVLQMMMLRSLKQAHYSEDPLGHFGIAAKYYTHFTSPIRRYSDTMAHRMIHAYLEEGMGD EVKEHFKEELPEVADQTSTQERRSIDTERATNDLKMTEYMADQVGNKFEAVISSVTSFGM FVQLENTVEGLIHISNLKDDYYSYDEKTMTLTGRATHKKYKVGMPIKVVLTNANVEQHQL DFEVYDPDAKKRPHNDRGMGRRSGDRNFKGRSNYGGRDKSGDRRHKPSRNNRGQRLGQSE RGNRRRPNR >gi|300497811|gb|AEAT01000004.1| GENE 7 8313 - 8774 694 153 aa, chain + ## HITS:1 COG:BS_yvaI KEGG:ns NR:ns ## COG: BS_yvaI COG0691 # Protein_GI_number: 16080413 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Bacillus subtilis # 10 152 8 150 156 163 58.0 1e-40 MKQKAKDENVLAQNRQARHDYFIKDTYEAGIALTGTEIKSVRARHVTLRDGYVQIINGSA FLENVHIDEYKEGNRYNHDPLRSRRLLLHKKEIAKLADVKAQKGMTIVPLKVYLKHGFAK VLIGVAQGKKEYDKRETIKKRDQDRELRRKYRI >gi|300497811|gb|AEAT01000004.1| GENE 8 8921 - 9088 218 55 aa, chain + ## HITS:1 COG:no KEGG:LBUL_1699 NR:ns ## KEGG: LBUL_1699 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 55 1 55 55 67 90.0 2e-10 MGFWIMLLSGLIGLSLVIFGVEKELPKGQKIAFWLIGAALLVFAVALALPNGLQL >gi|300497811|gb|AEAT01000004.1| GENE 9 9353 - 10687 2256 444 aa, chain + ## HITS:1 COG:Z5177 KEGG:ns NR:ns ## COG: Z5177 COG1486 # Protein_GI_number: 15804281 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Escherichia coli O157:H7 EDL933 # 5 444 3 440 440 555 59.0 1e-158 MSDKKFSVVIAGGGSTFTPGFVISLCANQDKLPLRKLKLYDIDADRQKKIGDACAIIVKE KAPQVEFEYTTDPEEAFTDVDFVLGSIRVGKYEMRNQDEKIPLKYGVNGQETTGPGGMAY GLRSIPAIIEIIDFMEKYSPNAWMVNYSNTIAIVSEACRRFRPNAKVVNICDMPIDDMGR MAAIAGLKSFKDLDFTYYGLNHFGWWKSVTNKKTGEDLMPLLKDYVKKNGYYVGGDFDKE TEASWVATFKKVADCYALDPTTLPNNYMQYYYFPQYEVENANPHYTRTDEILEYRQKIVF GECARIVKEGTAKGNLWESEVHSNYIIDICHAIAFNTHEKYLANIPNNGAICNFPDDAIV EVPCLFGSNGVQPLVVGEAGRFQLGLMMEQVTCEKLVVDAYEQKSYIKMLQAFALNKTVP DASVAKKILDDMMVVNKPYWPDLK >gi|300497811|gb|AEAT01000004.1| GENE 10 10732 - 12615 2822 627 aa, chain + ## HITS:1 COG:BS_glvC_1 KEGG:ns NR:ns ## COG: BS_glvC_1 COG1263 # Protein_GI_number: 16077887 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus subtilis # 1 449 1 445 452 517 55.0 1e-146 MMQKLQKFGAAMFVPVLLFSFAGIVVALTSLFNNPLIFGSLANTNTFWYGLWDTVQQGGW TVFNQVDMLFVVGLPIGLAKKAHGRAAMEAIVTYWTFNYFIAGFLTHWGAFFGLKDYVKT QIVANSANNGLTMIAGIKTLDTSIVGSLVIAGIVVWLHNRYFDKKLPDFLGTFQGSAFVV ILGFVAMFPVAFLTCLIWPKVQMGITGLQEFMASSGLIGVWIFNFLNRVLIPTGLHHLVY IPFQYGPAVVAGGLQPWWLKHLTEFAESTKSLKSLAPNMGFMLYGNEKVFLVPAICLAFY HTAKKDKKKQTSALLLPAALTSFLAGITEPVDFTYLFAAPILWVIYSVLAATMNTTMYIF GVVGQMTDGAIGIASMNWLPLWANHWHTYMAQFIIGLIYAVIIYFIFRFMIVKFNYATPG READDQEVKLMNKKQYKEAKAAEQAAEAAGQNSSDPYIARATAYATLLGGPENIAEITSC ATRLRVTVKDPDKVGADAAFRKNQAVGVVRHGSAIQVIVGLDVAQVLERIEDIIADSGNT VAKAEVDPDEEKATGYLDLLGGRSNIKELTSCSTRVRVHVFDTKKVAGDDDFKKFGASAV ERRDDQEIDIVVGLEAERVVDKMKEIM >gi|300497811|gb|AEAT01000004.1| GENE 11 12699 - 13481 767 260 aa, chain + ## HITS:1 COG:BS_yfiA KEGG:ns NR:ns ## COG: BS_yfiA COG1737 # Protein_GI_number: 16077886 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 4 258 3 249 254 93 27.0 4e-19 MVGLKARIVEKSSDLNPSDKKILNYLLNNAAECSELSLAKLAKKLYVSESAIFRLCKKVG LSGYSELKYELADFSKGEKRMVKQQDTFAERLVKNLRSELSYFRTLDFESFYSTLNQTKN IYIYTTGWQQASIASYLSNQLLVNVGKPTVVMPSAISELKMSKNWLQDHDQLIVISFSGE DPDLCQLLDELHLLNEHLTITSLTTIKESRLASLSDYSLFFQPSLFHESISTKNWAFSPA YTMIDLLINGYCEWLRKEDE >gi|300497811|gb|AEAT01000004.1| GENE 12 13481 - 13981 698 166 aa, chain + ## HITS:1 COG:no KEGG:Ldb1824 NR:ns ## KEGG: Ldb1824 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 166 1 166 166 293 98.0 2e-78 MQEKALNWLDRLTKSARLTPKRILKIYTFVLFFAPLAYLLLLQLRAGAAKQTITDSIAAS PATTVSIIVAAGDFLLGYLCWIDGGALLADRRQYMKFMKLQLWTQLIVGNWFCLLFAIFA LRRGEDLPEESKVKPSQLLSLTYLIASLFVICFVFYVVLAFRAVKG >gi|300497811|gb|AEAT01000004.1| GENE 13 13987 - 14475 730 162 aa, chain + ## HITS:1 COG:BH0296_3 KEGG:ns NR:ns ## COG: BH0296_3 COG2190 # Protein_GI_number: 15612859 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Bacillus halodurans # 6 154 6 154 161 135 48.0 2e-32 MFNFFKKSKSKGNEVKAPIKGNLIPLSEVSDDVFSQKMLGDGFAVKPTGQEVVAPVSGTI TTLFPTKHAIGIKTAEGLEVLIHLGIDTVELKGEPFNLFVEQGDSVKAGDKLAEMDIADV ADHGLDNTVMVVYTNMDLLKEVKDVDPRPVEAGDDAQEIAFN >gi|300497811|gb|AEAT01000004.1| GENE 14 14636 - 15154 529 172 aa, chain - ## HITS:1 COG:BH2982 KEGG:ns NR:ns ## COG: BH2982 COG2153 # Protein_GI_number: 15615544 # Func_class: R General function prediction only # Function: Predicted acyltransferase # Organism: Bacillus halodurans # 31 169 6 146 155 76 32.0 3e-14 MAKHNQLVMERILSTVKKRQKNDFSKEIQVKHFNELSAREVFCLSRIRDDVFVAEQEITV PELDDQDLSAYHVFLLNEDQSNALAAARFFSEEGRFYIGRVAVQKTARHRGIASQLLGAI ENYVLANNLTKELYLHAQASARDFYLANGYHDVGPVFMEAGIPHQMMAKSLA Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:03:47 2011 Seq name: gi|300497808|gb|AEAT01000005.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00106, whole genome shotgun sequence Length of sequence - 3246 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 9 - 85 87.2 # Pro TGG 0 0 - TRNA 89 - 161 79.9 # Asn GTT 0 0 + Prom 610 - 669 3.8 1 1 Tu 1 . + CDS 696 - 2288 2353 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) 2 2 Tu 1 . - CDS 2325 - 3200 737 ## COG0566 rRNA methylases Predicted protein(s) >gi|300497808|gb|AEAT01000005.1| GENE 1 696 - 2288 2353 530 aa, chain + ## HITS:1 COG:L00396 KEGG:ns NR:ns ## COG: L00396 COG0367 # Protein_GI_number: 15672334 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Lactococcus lactis # 1 530 1 530 530 642 61.0 0 MCGFLAIDSKEFDLKTFDEALAKCQDRGPDMTRVFDERGVTFGFNRLAIMDLTDSGMQPF ETLDCTLVCNGEIYNYPELKKNLETDYEFTSSSDCEVLIPLYRKYGIETMVKMLDGEFSF VLYDHLSKTIYAARDIIGIRPMFYGFTKKDGKIAFASTGKNLLDLCREIHPFLPGHYYDG EKIVAYHEPDLTPKMSTDDFETTTHKIHDLLVESVDQRLASDAPVGYLLSGGLDSSLVCS IAARLQPDTKIRTFAIGMDQNPIDLKYAREVADYLGTDHTEFIMTREDVLGVLREVIYTL ETWDITTIRASIGMYILCKKIHETTDLKVILTGECSDELFGYKYTDFAPSPEEFQKEAAK RLRELYMYDVLRADRCISANSLEGRVPFADREFVDYVMSVDPDLKMNHYHKGKYLLRKAF EEGDWLPRDILMREKAAFSDAMGHSMVDDLKEYAESKYSDEDLAKAGEKYPYRTPFTKES LLYRDIFEEFYPGKADWIKDYWMPNRSWKSLESVTDPSARVLSNYGASGE >gi|300497808|gb|AEAT01000005.1| GENE 2 2325 - 3200 737 291 aa, chain - ## HITS:1 COG:Rv0881 KEGG:ns NR:ns ## COG: Rv0881 COG0566 # Protein_GI_number: 15608021 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Mycobacterium tuberculosis H37Rv # 17 285 22 276 288 144 36.0 2e-34 MDRIDRENNLIRINAFDDPRLKLFTDYNEAQLFHYYEPEAGIFIAESPKVIERAIRAGYE PIAMLVEGKALERDLADFDRELAANHDHLLDFPIFVAQSDLLRQLPGYNLLRGAICAFRR KKRPSLREFAAALPKHARVGVLESVVNPTNVGAIFRSAAALGMDGVLITTDSSDPLYRRS GRVSMGTVFQVPWTYLDQKLWREKGVASLQELGFKTAAMALRDNTVDIDDPVLKEADRLA VILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKKGLD Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:03:50 2011 Seq name: gi|300497798|gb|AEAT01000006.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00160, whole genome shotgun sequence Length of sequence - 8219 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 5, operones - 4 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 365 101 ## gi|300811217|ref|ZP_07091724.1| hypothetical protein HMPREF9264_1526 2 1 Op 2 . - CDS 376 - 951 338 ## LA2_00115 hypothetical protein - Prom 1068 - 1127 5.5 - Term 1121 - 1169 8.7 3 2 Op 1 . - CDS 1190 - 1843 240 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 4 2 Op 2 . - CDS 1845 - 2363 351 ## LDBND_2038 hypothetical protein - Prom 2465 - 2524 4.1 + Prom 2480 - 2539 3.6 5 3 Op 1 3/0.000 + CDS 2560 - 3222 1052 ## COG1428 Deoxynucleoside kinases 6 3 Op 2 . + CDS 3244 - 3942 1002 ## COG1428 Deoxynucleoside kinases + Term 3946 - 3974 -0.3 + Prom 3962 - 4021 5.5 7 4 Op 1 16/0.000 + CDS 4186 - 5643 2429 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 8 4 Op 2 . + CDS 5663 - 6409 553 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 6455 - 6492 6.5 + Prom 6467 - 6526 7.3 9 5 Tu 1 . + CDS 6627 - 7937 1797 ## COG2252 Permeases + Term 8010 - 8054 2.0 Predicted protein(s) >gi|300497798|gb|AEAT01000006.1| GENE 1 2 - 365 101 121 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300811217|ref|ZP_07091724.1| ## NR: gi|300811217|ref|ZP_07091724.1| hypothetical protein HMPREF9264_1526 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] hypothetical protein HMPREF9264_1526 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 69 121 1 53 54 109 98.0 6e-23 MLPLRVPKFGIDYSETYTMDQTLSFRPAATDIDSTRAKKSVRNEFWEESGMLNPMIKRNK LVQTQEHRLLAVGENVTDTLWYERQAFTGFTMMHPVINYLGFFSKDVNVQVPADLVYFKN L >gi|300497798|gb|AEAT01000006.1| GENE 2 376 - 951 338 191 aa, chain - ## HITS:1 COG:no KEGG:LA2_00115 NR:ns ## KEGG: LA2_00115 # Name: not_defined # Def: hypothetical protein # Organism: L.amylovorus # Pathway: not_defined # 1 174 1 177 192 64 28.0 2e-09 MGGINCRPGKMACRVSEDDQEEYRLEYAHVVKNVFRYIEMFSHANALVEELMFLEQKDTE RSSALISKVIEALDRAASYDNFAYAELVELTARLTKESSTVNSESAFLGNFAKTLQSHLL DLEKLSYEYSDNKVIEHLKDGELHTYIRYNEITQLTQRLAEGISETLLLLKKYSEVTLKM EQVEEKSLKRI >gi|300497798|gb|AEAT01000006.1| GENE 3 1190 - 1843 240 217 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 201 1 201 223 97 29 4e-20 MTKVIEVSHLGKKYGQRTIFKDVSFAVERGEFVAIVGPSDSGKSTLLNMLGLLEAVDQGE IKLLGKPMPKVNSRQATKLRRQQLNYLFQSFALIQTKTVEENLLLAMAFVKKSKREKQKE IDQVLASLDLSKVKQSKVQTLSGGEQQRCALARAILKPGEIVLADEPTGALDAKRAQAAF NQLLDLRSQQGKTIVLVTHNLAEAAQADRVIDLEKFV >gi|300497798|gb|AEAT01000006.1| GENE 4 1845 - 2363 351 172 aa, chain - ## HITS:1 COG:no KEGG:LDBND_2038 NR:ns ## KEGG: LDBND_2038 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 172 20 191 191 280 99.0 1e-74 MTYVEIGGIFASGMNGYLKFADQKTRERYTNKALLARFNLSDNKPNFVSVSSYIDRLQKS LWQTVIMFGAALAILLVLLLLLVLILVMIYKQLNREEIAVKKFLGFSPRQLYALPLGVIF LTGAGQLFAAGLLRSKVGLFVLPLICLLQLSLFYLYVIKDSFNDVVELFKGE >gi|300497798|gb|AEAT01000006.1| GENE 5 2560 - 3222 1052 220 aa, chain + ## HITS:1 COG:SPy0121 KEGG:ns NR:ns ## COG: SPy0121 COG1428 # Protein_GI_number: 15674338 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Streptococcus pyogenes M1 GAS # 9 217 2 210 213 223 55.0 3e-58 MNRKSVITVIVLSGPIGAGKSSLTSILAKHLGSTAYYEEVNNNPVLPLYYKDMKRYTFLL NTYFLNKRLAEINAAAGNHNDVLDRSIYEDLLFFNMNVDNGVADPTEYQIYHDLMDNMME DVPGNPRKKPDLLIYIHVSLDTMLKRIGKRGREFEQLDSDPGLKEYYQNLLRYYEPWYEQ YDVSPKMMIDGDKYDFVDNIDDQDLVLDIIDNKLREIGNL >gi|300497798|gb|AEAT01000006.1| GENE 6 3244 - 3942 1002 232 aa, chain + ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 211 1 212 217 250 58.0 2e-66 MTVIVLSGPVGAGKSSLTAILSKYLGTKPFYESVDDNPVLPLFYKDPLKYTYLLQLFFLN TRFHSIKKALSDDNNVLDRSIYEDSLFFHMNADIGRANDLEVQTYDELLESMMKELERMP KRHPDLLVHINVSYETMIRRIQKRGRSYEQLSFDPTLEDYYKRMLRYYEKWYDDYDYSPK MMIDGDHYDFMASESDRTEVLDQITQKLKQVGKLPKNWQAGEIATESIEFSS >gi|300497798|gb|AEAT01000006.1| GENE 7 4186 - 5643 2429 485 aa, chain + ## HITS:1 COG:lin0840_1 KEGG:ns NR:ns ## COG: lin0840_1 COG0834 # Protein_GI_number: 16799914 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 3 263 1 258 268 231 47.0 2e-60 MHLKKLRKFLLLPVSLLIAALFLTAPKAQAASKKTYIIGTDQTFKPFEIQDKDGTYNGKN PGIDIEILREIAKHENFKYELKIMSFNADVQALQSGQIDGMIAGMSVTEERKKTIDFSNS YYTDGVCLAVAKDSKITSMKDLKGKTVNVKTGTTSAIYAKSIQKKYGFKLKYYTNSNTSW ADVKSGNADACFDDGPSLRYGIANGTGLRIVGKQVSNAPLAFAVKKGENQELLKMFNDGL AWLKKTGRLKKIVNKYTSKKAVKSQVVADTSILGLIKDNAGALLQGLWMTIELSIVGILA ALVFGLILGIMGIAEHKFWHGLANVIIYIFRGIPMMVLAFFIYIGMPTLLGHKLPLFTAG ILTLMLDEGAYIGAIVRGGFESVDVGQWEAARSLGLPYYKALWKVVAPQGFKLMIPSLVN QFIITLKDTSILSAIGVMDLTQTGTNLIAQNFQGFKMWLIIAVMYLIIITLLTWLSNYIQ KKMQH >gi|300497798|gb|AEAT01000006.1| GENE 8 5663 - 6409 553 248 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 7 245 2 242 245 217 45 2e-56 MEEKYKVQVTDLHKSYDGVHEVIKGASLDVAPSEVVCIIGPSGSGKSTFLRCINKLEDFQ NGHIYLDGVDLADPKVDINKMREKIGMVFQHFNLFPNMTVLENITLAPVELGKEDKETAI KEAHKYLQMVNMDDKADVKPTTLSGGQQQRVAIARALAMKPDVMLFDEPTSALDPEMVGD VLNVMKKLAQEGMTMIVVTHEMGFAKQVADKVAFFYGGVIKELGTPEEIFDHPQEEETKN FLNKVLNI >gi|300497798|gb|AEAT01000006.1| GENE 9 6627 - 7937 1797 436 aa, chain + ## HITS:1 COG:BS_yebB KEGG:ns NR:ns ## COG: BS_yebB COG2252 # Protein_GI_number: 16077704 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus subtilis # 4 434 1 439 440 387 53.0 1e-107 MEFINKYFELDKLGSNSKREFIAGLTTFFAMCYILFVNPSVLGASGMDKGAVFTATALAS ALGCLIMGIFANYPIATAPSLGLNAFFAYTVCIGMKVKWQTALAAVFLASIIFILITVFK LRELIVDSIPNDLKFAISAGIGIFIAFLGLQNGKLVVNSASTLVTIGSFKDPAAWVTIFG LLVTIFLMIRRVPGAIFIGIVLSSIFSILVGQSKMPTSVVSLAPSLKPSFGQAIFHLGDI NTVQMWTVVLTFLLVAFFDTTGTLIGLAHQAGLIDKDGKMPRIGKAMAADSTAMMAGSII GTSPVGTYVESSSGIAAGGRSGLTAVWVGIFFLLSMFFSPLLSVVTTTVTAPALIIVGVL MAANLAKISWDKLEIAVPAFLIVIGMGLTYSIADGMALGLIVYPISMTAAKRTKEVSPMM WILAVVFVIYFLILNV Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:04:09 2011 Seq name: gi|300497779|gb|AEAT01000007.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00021, whole genome shotgun sequence Length of sequence - 16851 bp Number of predicted genes - 18, with homology - 18 Number of transcription units - 10, operones - 5 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 666 - 1181 106 ## COG0675 Transposase and inactivated derivatives + Term 1258 - 1305 2.3 + Prom 1365 - 1424 6.4 2 2 Op 1 . + CDS 1651 - 2166 905 ## LDBND_1866 hypothetical protein 3 2 Op 2 . + CDS 2169 - 2795 1057 ## LDBND_1865 hypothetical protein + Term 2808 - 2859 4.4 - Term 2795 - 2845 8.0 4 3 Op 1 . - CDS 2846 - 4384 2277 ## LDBND_1864 hypothetical protein - Term 4405 - 4447 9.3 5 3 Op 2 . - CDS 4448 - 4777 613 ## LDBND_1863 hypothetical protein - Prom 4815 - 4874 4.9 + Prom 4757 - 4816 3.4 6 4 Tu 1 . + CDS 4867 - 5409 493 ## COG0194 Guanylate kinase + Prom 5428 - 5487 6.0 7 5 Tu 1 . + CDS 5517 - 6002 688 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) + Term 6031 - 6071 9.1 + Prom 6178 - 6237 5.9 8 6 Tu 1 . + CDS 6286 - 7332 1539 ## COG1052 Lactate dehydrogenase and related dehydrogenases + Term 7341 - 7375 3.4 + Prom 7345 - 7404 5.0 9 7 Op 1 7/0.000 + CDS 7503 - 7976 169 ## PROTEIN SUPPORTED gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 + Term 8022 - 8059 2.0 + Prom 8044 - 8103 7.2 10 7 Op 2 7/0.000 + CDS 8197 - 8946 191 ## PROTEIN SUPPORTED gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 + Term 8968 - 8998 3.0 + Prom 8974 - 9033 5.0 11 7 Op 3 7/0.000 + CDS 9089 - 9802 1024 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) + Term 9965 - 10002 9.2 + Prom 9951 - 10010 3.6 12 8 Op 1 7/0.000 + CDS 10094 - 10852 185 ## PROTEIN SUPPORTED gi|145223395|ref|YP_001134073.1| NLP/P60 protein 13 8 Op 2 . + CDS 10898 - 11677 883 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) + Term 11688 - 11725 2.4 - Term 11676 - 11713 2.4 14 9 Tu 1 . - CDS 11726 - 13006 567 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 - Prom 13200 - 13259 5.1 + Prom 13159 - 13218 5.9 15 10 Op 1 . + CDS 13336 - 14382 1112 ## COG1316 Transcriptional regulator 16 10 Op 2 5/0.000 + CDS 14478 - 15269 1207 ## COG3944 Capsular polysaccharide biosynthesis protein 17 10 Op 3 3/0.000 + CDS 15279 - 16064 841 ## COG0489 ATPases involved in chromosome partitioning 18 10 Op 4 . + CDS 16068 - 16844 648 ## COG4464 Capsular polysaccharide biosynthesis protein Predicted protein(s) >gi|300497779|gb|AEAT01000007.1| GENE 1 666 - 1181 106 171 aa, chain + ## HITS:1 COG:TVN0764 KEGG:ns NR:ns ## COG: TVN0764 COG0675 # Protein_GI_number: 13541595 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Thermoplasma volcanium # 8 168 256 405 416 130 46.0 2e-30 MQRLTDWRNAKIRQFAHKASKRIVDYALSCGANTIVIGKNKTWKRSVNMGKKNNQNFIGL PHQQMINMIRYKANMVGITVICTNESYTSQTSALDGEKPCWNNGNKSRKKQGLSPANRRI HRGMFRSNKGLLVNADINGAMQIVRKVFPNVSFANGIVDAVLHPAKWSPLI >gi|300497779|gb|AEAT01000007.1| GENE 2 1651 - 2166 905 171 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1866 NR:ns ## KEGG: LDBND_1866 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 149 1 149 171 245 99.0 5e-64 MQINLKDLTKAIEEQTYLSDMETIKYSEVSRSKKKLREHALTMVQEVATALKKDRLMQVQ LVLEGKNPITFALETNIINLPLANYKKLINFFDEEEAQPVKVYFETASEYLNASHFRIDL FMDGDELVADVEGAADRLADAMSEKIKPVKEGEAAAKEAAKEAKAKTKKEA >gi|300497779|gb|AEAT01000007.1| GENE 3 2169 - 2795 1057 208 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1865 NR:ns ## KEGG: LDBND_1865 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 208 1 208 208 387 98.0 1e-106 MWSWNVLGVALWVGAIVYLVFIVQNIRRRRLKMIIQRQHKFEWGNSLISLLEVASFCLLA GWLLAVSLFDDPNLTDTSRITSSVIYKPLVLQPSASQSYYVQVKSTKNRDLSQQYIFYLK GKKYTVPSYLATVSYEKDPINVTASALPFSRKELKKEDSRYQQAYVAIYTAKYKNTAANG IGLHVGHQAKRFYLIRVPDSSFIDKESK >gi|300497779|gb|AEAT01000007.1| GENE 4 2846 - 4384 2277 512 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1864 NR:ns ## KEGG: LDBND_1864 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 512 1 512 512 932 99.0 0 MKEKTKILLYWFILLQPFLDLDFFYRGKLATILPFTIPTIIRIAGVIVLVGLLVWGQKQL PPAWLWAYLALLTLYGIFHLWHMQNFKSLSPNDYGYSNFGEIFYLFRMLLPLALIWVTKK LEISQDFLLKAFAWVSGLFTGTIVLSNLFVVSLKSYETGVISGNIFTWFMGPLYGYSHSA SKGFFYFTNTLSAILLMLAPVVFYLLLERFSWQTGLLALSQTLAMLEVGTKVALYGLAGT LAVSLIAWLVHLFCLKNVKFSKGGLVTLLALAGITGVCWQVSPAVQRYKYEIYWANSHDS KIDQENALLKAGLAKYKNDPDKLKEFEKDFLAKYYQKYALNKRFITKSYPYKYDPQFWID LLKEPASVRLANRKVEEAMLKQVVKYDNDPLDKWLGIGYMRQTNIFNLERDFTAQYYSLG LVGAFLYLAFYPAIILYGAFEWLKEKACRTFYLTSLLIASALLLGASYMSGNVLDFPTSN LLLAFLDGGLLAYIKEEKGRSRGLRIVRFEKK >gi|300497779|gb|AEAT01000007.1| GENE 5 4448 - 4777 613 109 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1863 NR:ns ## KEGG: LDBND_1863 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 91 1 91 112 118 98.0 8e-26 MKKADVELGAVVNAKSEEELKKQFQGTVEKIYENSALLAITSFDDVDAAAVSDLNYKLVV NFKNMKPARAAKKAKALSTNNVTIEKMAPTMKADDKDKKGKKAPAKKSK >gi|300497779|gb|AEAT01000007.1| GENE 6 4867 - 5409 493 180 aa, chain + ## HITS:1 COG:PA5336 KEGG:ns NR:ns ## COG: PA5336 COG0194 # Protein_GI_number: 15600529 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Pseudomonas aeruginosa # 1 179 1 184 203 81 29.0 7e-16 MAKKIILIAGPSGAGKTTISEYLTDRYQIPRVITHTTRPKRPGESGTAYYFEDDDSFAQL HFFEHVKYGDYQYGSSKEGLERAWAKNDLVSLIVDIKGARSYLEALGDQVYFLYVTCSLD TLAQRMADRGDASDQIKKRLTGSELNELPEDLAKYAHVLVNDDLQATYASLDSLVRKLQN >gi|300497779|gb|AEAT01000007.1| GENE 7 5517 - 6002 688 161 aa, chain + ## HITS:1 COG:L161266 KEGG:ns NR:ns ## COG: L161266 COG0791 # Protein_GI_number: 15672918 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Lactococcus lactis # 29 144 61 182 197 93 46.0 1e-19 MKFKKSLAKVVAAVSLAFAGFVAVNTVNTQNNTVQAASKTSQCNKVVSLAKKQVGKRYVY GATGPNAFDCSGLTSYVYSHAIGKYISRTTYSQVYQGKTVKVSTASLKKGDLLFWGSKFS PYHVGIYVGGGQYVHAATPSQGVRKQYLSSYFWPSTAKRII >gi|300497779|gb|AEAT01000007.1| GENE 8 6286 - 7332 1539 348 aa, chain + ## HITS:1 COG:FN0487 KEGG:ns NR:ns ## COG: FN0487 COG1052 # Protein_GI_number: 19703822 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Fusobacterium nucleatum # 1 334 1 338 338 242 38.0 7e-64 MRIACYGVRPLERSYFEKLNKYDYDLKLIPEYLNRENVVQAEDCDAVLVRGNCLCDRTNL EQFKNYGISWVFTRSVGVDHFDLEAAKDLGISVARVPNYSPYAVANLAFTLGLTLSRHVG EAAHHVHEQDFGMHPDYFATEFNRLKVGIYGAGKIGAVEGKMWQALGAEVYAYDPFPSDF AKQYCTFVSEDELLATCDIVSVHVPYFPGKNDKLMNAEFIAKMKKGAVLVNTARGELADE AAIAVAVSSNHLSGYGADVVSNEKKIMGHKFDCESDVPDQEVQSLMDLYPRVLLTPHMGS FTEPALEDMISLSFNNFHNMATEGAVDARNEVVAAPESSTFASEKLRA >gi|300497779|gb|AEAT01000007.1| GENE 9 7503 - 7976 169 157 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 [Haemophilus parasuis 29755] # 5 149 10 164 175 69 30 1e-11 MKQFKQILVKLTLALALVVPIAVQANSHQAQAASVTTKRNKVVSLAKKQVGKRYVYGATG PYSFDCSGLTQYVFKRAIKKSLTRTTYTQVKRGKTVRVSTASLKKGDLLFWGSKSSPYHV GIYVGGGQYVHAATPSQGVRKQYLSSYFWPSTAKRVI >gi|300497779|gb|AEAT01000007.1| GENE 10 8197 - 8946 191 249 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 [Haemophilus parasuis 29755] # 101 241 35 164 175 78 34 4e-14 MALVLVAPVAASAQAPAAQAATVKAVNKQVVVNYVSGYSVKAWKNYKVKLGAANDTGISF KHGTTLTVIGEVKYKKQTWYKIADNEWILASYTLSPKAWAKKAAAAKKAAAKAAKKAAAA KKVSKSKQTKQNKVVALAKAQVGKPYVWGATGPYSFDCSGLTSYVYSRALGKYITRTTYT QVYQGKTVAVSTATLKKGDLLFWGSKSSPYHVGIYVGGGKFVHAATPSQGVIKQSLSYYF WPSTAKRLI >gi|300497779|gb|AEAT01000007.1| GENE 11 9089 - 9802 1024 237 aa, chain + ## HITS:1 COG:CAC2944_2 KEGG:ns NR:ns ## COG: CAC2944_2 COG0791 # Protein_GI_number: 15896197 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Clostridium acetobutylicum # 116 208 24 113 136 85 50.0 8e-17 MKRKFSLVLLLLAAWLGGAQPAYAATDSQDSNITIVKKTRVAYNKGNKVNTWTTYGVGKK LVGQVKSGYKFTAAGQAQYKGRTWYRIKDNKWILGTNTVTTKKYASIKAKAAKTAKQKKV VALANAQVGKAYVWGATGPYSFDCSGLTMYAYKKATGLTLPHYSVSQLYYGKAVSTKKLV KGDLLFFGSKSAPSHVGIYVGGGKFVHASSPTVGVIKSKVSTNRSSAFYPSSARRVI >gi|300497779|gb|AEAT01000007.1| GENE 12 10094 - 10852 185 252 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145223395|ref|YP_001134073.1| NLP/P60 protein [Mycobacterium gilvum PYR-GCK] # 127 241 226 339 348 75 40 2e-13 MGNARWIKFLGVAALFFGGLGLGGQPANAQVKGHLSKVQVVKKAPVWTNYKKGKKTHKYL KKGTVKKVKASATDKKHKVWLKIGNKKWIASKYTVVLTTTKQTAAKKPTNPVLNTNQLTQ AASSQAPVGSSWRQNTVVALAKAQVGKAYVWGATGPSSFDCSGLVQWVYKTAIGQTVSRT TYTQVEEGVAVPVSTVSLQPGDLLFWGDVAAPYHVAIYVGNGQYVSAADEQQGVILATIS SYFWPSTARRIL >gi|300497779|gb|AEAT01000007.1| GENE 13 10898 - 11677 883 259 aa, chain + ## HITS:1 COG:CAC2663 KEGG:ns NR:ns ## COG: CAC2663 COG0791 # Protein_GI_number: 15895921 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Clostridium acetobutylicum # 138 259 141 255 255 70 36.0 3e-12 MKKSNMIKFSAAALTFLGISATGVKPVKQPAQAASKRIKVISKQYVTVWANYQKGRHVAT HLKKGSSHFVYQTATDSMGNLWYRIGKKEWVMAKYFNQVKSAKKAVKAKKTKAKSKKTVK KARSAASLAASWFAPMGSKARAKAVVSLAKQQVGKAYVKGSKGPNAFDNASLVAYVYKQA AGVNTGSSTKSQVKKGIAVDPSSGFAEGDLLFWGSKNKPYNVAIYVGDGKYVTAAGDQQG VVQASLSTYFWPSRARRVL >gi|300497779|gb|AEAT01000007.1| GENE 14 11726 - 13006 567 426 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 41 421 46 422 425 223 37 9e-58 MIDNQTHSVKAYLAGVNLDDPNFDYSMTELANLAEANNFTVVGSSQQKAENIVASSYLGK GKVAEIKDLAQGLGASVLIVNDELTPVQIRNLEHMTKLRVIDRTELILEIFSSRARTKQA KLQVQLARLQYELPRLHPSENNLDQQHGSGGSTGGGFANRGAGESKLEMNRRTIGKQISA IKHELKEISGQEEIKAARRNQSQLPKVALVGYTNAGKSTTMNGLLNAFGADNEDKQVMAK DMLFATLDTSVRRIDLDGFSFILSDTVGFVSKLPHKLVDSFKATLQEAKDADLLINVVDA ADPNMNQMIKTTLEVLDEIGVKDLPMITAYNKADLTDRNYPQIEGGDLLYSAVDPASIQA LAKLITTRLFSNYQITDLRLPLTAGKDLAYLHQHSRVLKEDYQADGIEVSARLSPQDRAR FSAYQI >gi|300497779|gb|AEAT01000007.1| GENE 15 13336 - 14382 1112 348 aa, chain + ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 30 309 8 279 304 160 30.0 4e-39 MNEPDQSRVHHHHHHHRHHHRRKRHIGRWIAGIVGVLLLAVLLVIGYAYKNARDAATTMY TPVSKSTKSNKNRSSLDKILDAKKPVNLLILGTDTGAEGRSVKNYHGLTDLMMFVTVNPS KKQTRVTTIARDSKVNLPDYPEVSPIKLNSAYSLGGVSETIKTLDKYYSVPIDGYVLVNW ASTMKIITKMGGVDVISPLTFDNMGYSFKKGQMYHISGKKALAFVQLRHGDPRQDYGRQE RERLVMMAAIKKSVSYKTILNSSFMQSLGDSMQTDLSLNDMIKLAMNYQGATDNVKSDYA QGKSSSVNNQRFGNMEVEIMSTKERQRISNNIRQTLGIKNVNVYKEDN >gi|300497779|gb|AEAT01000007.1| GENE 16 14478 - 15269 1207 263 aa, chain + ## HITS:1 COG:SA2457 KEGG:ns NR:ns ## COG: SA2457 COG3944 # Protein_GI_number: 15928250 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Staphylococcus aureus N315 # 6 237 30 217 220 91 30.0 2e-18 MIGLGLIAYGVSEYVLVPKYTASTQLLVNRKSTDANQAYANQQADINAVTTYKDIITSNV ILKGASKYLANPVTLVKKATPAKKAVYRTNDDGTRTLVKKAVKAKPAVYKRESKSYSVSA SELASAVSVTTTTSSQVLTLSATAETPAKAQAIANAVAKEFKEQIPKIMDVNNVTIVAEA PKGTKSFPKVSLITAIGVLAGLVISLLIIIIKDLSDTTVRDDSFMTNELGLTNLGEIASI TMPKDWTFTAKTAEKRGSSRRRV >gi|300497779|gb|AEAT01000007.1| GENE 17 15279 - 16064 841 261 aa, chain + ## HITS:1 COG:BH3668 KEGG:ns NR:ns ## COG: BH3668 COG0489 # Protein_GI_number: 15616230 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 15 238 9 231 235 179 44.0 6e-45 MAFGRKNYLDNETMKNGAKLITLANPQSVISEQFRNIRTNINFMNVDKEVKTIAFTSAMA SAGKSTVSANVSITMAQAGKKTILIDADLRRPTLHSTFNVSNSNGLTTLLTSRAKEMGAN SVIRESGVENLSILTAGPIPPNPSELLSSKHMLDLIEDLKQEYDMVVIDLAPILDAAETQ QLTSSLDGTILVVRQAHSQKSAVKRAVELLKLTKSPILGYVMNDVDADGDDGYGYGYGYG YGYGYGYGEEKEKKGLFGRKK >gi|300497779|gb|AEAT01000007.1| GENE 18 16068 - 16844 648 258 aa, chain + ## HITS:1 COG:BH3667 KEGG:ns NR:ns ## COG: BH3667 COG4464 # Protein_GI_number: 15616229 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Bacillus halodurans # 3 258 1 255 255 197 39.0 2e-50 MPVVDLHCHILPGIDDGSKSWEASLKLARAAVADGVTHALCTPHTLNGRYTNHKQDVIKL TEEFQDRIDQAGIPLTVFPGHEVRLSGGLTEALDNDDILFCDEEGHYMLLELPSNEVPHY TKNMVYELTRRGITPIVVHPERNKEILANPQKLQEFLEMGVLVQITASSYTGLFGKEIEE CSREFIKAGQCAFFASDAHDLPRRQYQLSEALDKLAKEFGEDKKQKYLNNAQAVINGDPV YLDWQPLPKKRKKFLGLF Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:04:27 2011 Seq name: gi|300497775|gb|AEAT01000008.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00229, whole genome shotgun sequence Length of sequence - 1453 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 - CDS 3 - 231 221 ## COG5017 Uncharacterized conserved protein 2 1 Op 2 . - CDS 240 - 704 292 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase - Term 714 - 746 1.2 3 1 Op 3 . - CDS 753 - 1421 584 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis Predicted protein(s) >gi|300497775|gb|AEAT01000008.1| GENE 1 3 - 231 221 76 aa, chain - ## HITS:1 COG:MA2172 KEGG:ns NR:ns ## COG: MA2172 COG5017 # Protein_GI_number: 20091014 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 1 76 1 74 155 64 42.0 5e-11 MIFVTVGTHEQPFNRLIEKMDELVANGDIKEKVVIQYGFSTYDAKHCEMHKMMSFDEMQQ TFKNARIVITHGGPSS >gi|300497775|gb|AEAT01000008.1| GENE 2 240 - 704 292 154 aa, chain - ## HITS:1 COG:all2287 KEGG:ns NR:ns ## COG: all2287 COG0707 # Protein_GI_number: 17229779 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Nostoc sp. PCC 7120 # 6 147 1 142 151 138 43.0 3e-33 MSKENIKVCLVGSSGGHLTHLYMLKPFWQNKDRFWVTFDKEDARSKLKGERFYPCYYPTN RNLKNLIKNTFLAIKVLRKEKPDLIISSGAAVAAPFFYIGKMMGAKLVYIEVFDRYDKPT VTGKLVYPITDKFIVEWEEMKQVYPKAINLGSIF >gi|300497775|gb|AEAT01000008.1| GENE 3 753 - 1421 584 222 aa, chain - ## HITS:1 COG:CAC3073 KEGG:ns NR:ns ## COG: CAC3073 COG2148 # Protein_GI_number: 15896324 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Clostridium acetobutylicum # 23 214 25 216 222 204 50.0 8e-53 MDMGYSSSPAYVKQSKVKGRLLYHGIKRLFDLLASLVALILLSPLFLWLAIKIHAEDGGP VFYSQIRIGKDEKPFRIYKFRSMVVNAEKLKKELLEQNEVEGAMFKMHDDPRITKIGKFI RAHSLDELPQLWNVLIGNMSLVGPRPPLPNEVEQYTDYDKQRLLVKPGCSGLWQATSRNA ADFADMVQLDIEYINRSGVFFDLWIIFKTIGVIFHPNGMYEE Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:04:28 2011 Seq name: gi|300497769|gb|AEAT01000009.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00019, whole genome shotgun sequence Length of sequence - 3276 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 45/0.000 - CDS 648 - 1448 607 ## COG0842 ABC-type multidrug transport system, permease component 2 1 Op 2 . - CDS 1445 - 2155 220 ## PROTEIN SUPPORTED gi|145635097|ref|ZP_01790803.1| 50S ribosomal protein L25 - Prom 2251 - 2310 8.9 + Prom 2479 - 2538 5.4 3 2 Tu 1 . + CDS 2574 - 3242 934 ## LDBND_0284 hypothetical protein Predicted protein(s) >gi|300497769|gb|AEAT01000009.1| GENE 1 648 - 1448 607 266 aa, chain - ## HITS:1 COG:SP1063 KEGG:ns NR:ns ## COG: SP1063 COG0842 # Protein_GI_number: 15900933 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 11 230 12 230 266 147 35.0 2e-35 MNPKHFRNISLGLRSIRIVANNEWRAFVHNKGLLLSMFMQPLITYGLLVMALNQNLASVH YESLILPYKQYALTGVLSFFMTTQMSQAMYRATVDKEYGLLAIKFTNGVQPWHYLTGMSF FPIAGLLFQSAVLIVLGLATGGVYNLGLLLLSLLVLIISLEFWSTLGIVLSTRISSYQQR DIIMTLIFSPVAYAAPTLYVFSNNSPLIIKVLAYINPLSYQLKALRTVAFGIFNINDLLI ALALTIIMIIFAQIILRRMPLSLAER >gi|300497769|gb|AEAT01000009.1| GENE 2 1445 - 2155 220 236 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145635097|ref|ZP_01790803.1| 50S ribosomal protein L25 [Haemophilus influenzae PittAA] # 1 202 1 205 205 89 30 4e-18 MIIADSLNIGYKDKVVVHDLSFSLDKGMFIALIGANGAGKSTLINSLIGVIPPVSGQISW KLKTDRVNPFNDVGFSPQSQLIDWYTSVSDNVYQGPLLAGFKPKEAQKTTKQALKLLGIS DLSAKPVDHISGGQQQRVQIAREIAREPQVYILDEPTTGLDVETSEKLFTYLKQKVDAGS IVLTSSHDLTLLESYASHVLFLDDHEQKYFGPLTDFLDSGTSLREKYLNERKAIEK >gi|300497769|gb|AEAT01000009.1| GENE 3 2574 - 3242 934 222 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0284 NR:ns ## KEGG: LDBND_0284 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 222 1 222 222 366 99.0 1e-100 MNTPRSREGNFVRYLVYFVVFVFTALADNLAIKSPSISIWNVILFLVLAAMCLLFYIYRY NREQRFFDSRFNVPWLSSFNFTLLLSFVVAAGRIGISYLQLYKGMPASGLQLAYASHSTS ALYWFMMLANGLVLPILEEYLCTGFLFNYWFRTEKKGVAYVGIICSGLFYAILTFQFTPA IFAFNFAFGMLFAWSYLSTQTIWLPLYLAALNGVLTVVTIAV Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:04:37 2011 Seq name: gi|300497756|gb|AEAT01000010.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00057, whole genome shotgun sequence Length of sequence - 12177 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 4, operones - 3 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 40 - 912 1455 ## COG2017 Galactose mutarotase and related enzymes 2 1 Op 2 3/0.000 - CDS 925 - 1839 1249 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) - Prom 1941 - 2000 9.8 - Term 2022 - 2058 7.2 3 2 Op 1 . - CDS 2202 - 3194 1634 ## COG3684 Tagatose-1,6-bisphosphate aldolase 4 2 Op 2 . - CDS 3252 - 3509 405 ## LDBND_1639 hypothetical protein 5 2 Op 3 10/0.000 - CDS 3554 - 4975 2004 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 6 2 Op 4 13/0.000 - CDS 5028 - 5342 569 ## COG3414 Phosphotransferase system, galactitol-specific IIB component 7 2 Op 5 . - CDS 5364 - 5852 641 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) + Prom 6089 - 6148 6.5 8 3 Tu 1 . + CDS 6182 - 6946 787 ## LDBND_1643 membrane-bound protein + Term 6978 - 7013 2.7 - Term 6966 - 7001 6.5 9 4 Op 1 8/0.000 - CDS 7143 - 8588 1748 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 10 4 Op 2 1/0.000 - CDS 8599 - 10296 2517 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Prom 10317 - 10376 2.0 11 4 Op 3 2/0.000 - CDS 10431 - 11342 864 ## COG3711 Transcriptional antiterminator - Prom 11488 - 11547 6.3 12 4 Op 4 . - CDS 11554 - 11907 634 ## COG1447 Phosphotransferase system cellobiose-specific component IIA - Prom 12045 - 12104 5.2 Predicted protein(s) >gi|300497756|gb|AEAT01000010.1| GENE 1 40 - 912 1455 290 aa, chain - ## HITS:1 COG:L74167 KEGG:ns NR:ns ## COG: L74167 COG2017 # Protein_GI_number: 15673611 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Lactococcus lactis # 7 290 8 291 297 202 37.0 7e-52 MAKEYAIANEQLKVKISSLGAELQSIKSKQDGYEYVWQADSRYWGRHAPLLFPFIGRSND NSYLLDGQKYAMKQHGFLRDYEFKLVSLESDQIVLLFESSPETKQVYPYDFAFKVKYQLR GKDMLVRYRIDNFNDKKMYYSLGFHPAFNLEGDLADYRLEFDPKQTELTSLLIDPAPFRS GKEEKVTLKDGSLPLSWPLLDKGLKIYKADAASHVKLASGHQHAVTLDISDFPYLAVWSP EEKQAPFVCVEPFRGLPDRYGRPVELSEKDGEQWLFPEMYNQITTTLTFD >gi|300497756|gb|AEAT01000010.1| GENE 2 925 - 1839 1249 304 aa, chain - ## HITS:1 COG:SP1191 KEGG:ns NR:ns ## COG: SP1191 COG1105 # Protein_GI_number: 15901056 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Streptococcus pneumoniae TIGR4 # 1 303 7 308 309 295 51.0 8e-80 MNPSIDISYPLDHLQIDDVNRVSQVSKVAGGKGLNVSKVINMLNHEVLATGITGGYFGQY IEDQLKKLELPYKFWHINQETRSCIAILHDGGKQTEILEAGPTLTEADGDQFLDHFKQLL KTSSLVTISGSLPAGLSADYYTKLIELTHQAGKKVLLDSSGKSLEAGLAAGPDLIKPNET ELQQLLGQKIDLDDLDVLKAALSRPELANIEWVVVSLGARGAFAKHGQDFYEARIPKIKV VSPVGSGDSTLAGMAVAIDRGEKAEDVLRWGMTTGMLNTMQAKTGWIDPSQFDEYYKQVT VTKY >gi|300497756|gb|AEAT01000010.1| GENE 3 2202 - 3194 1634 330 aa, chain - ## HITS:1 COG:SA1994 KEGG:ns NR:ns ## COG: SA1994 COG3684 # Protein_GI_number: 15927772 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Staphylococcus aureus N315 # 1 326 1 325 326 347 56.0 2e-95 MIKITKDVAQHLEKLSTADGVISALAIDQRGSLKRMLAEAANKPADEETIVEYKKAVSEE LTKYASGILTDPEYGLPATKVRDKNCGLLLSYEKTGYDTSEPGRMCDLIENQSGLRIKEE GADAIKFLLYYDPDEGEAINDKKHAFVERVGAEAKAVGLPFFLELLTYDANIADNQSPEF AKVKAHKVIEAEKEFSKPRYGVTVLKVEIPFNIKYVEGFNGDNEVVYSREEAKKLFKEQS DATDLPYIFLSAGVTSEEFIAEIKLAEEAGAKFNGVLCGRATWKPSIKIFAAEGEEAGRE WMRTQGKENIENLNKALTGAKSWRDKLEVE >gi|300497756|gb|AEAT01000010.1| GENE 4 3252 - 3509 405 85 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1639 NR:ns ## KEGG: LDBND_1639 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 85 1 85 85 140 97.0 2e-32 MKKSDSPVSAAEKARRDRVFMWTVFVIIINAVSLVTKLWVFQAAAMIGTTYALYKIVVWD NKKNRYSRKYYNWAGHALDKKDSSK >gi|300497756|gb|AEAT01000010.1| GENE 5 3554 - 4975 2004 473 aa, chain - ## HITS:1 COG:CAC2956 KEGG:ns NR:ns ## COG: CAC2956 COG3775 # Protein_GI_number: 15896209 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Clostridium acetobutylicum # 1 471 1 469 470 548 63.0 1e-155 MNAIISFANAVFKPLIDMGAPTIMLVVLTAIALCFRVKFSKALEGGMKLAIALTAISNVM SMLTTAFQVPMKQFVEHTGIHMDILDMGWAPLATITWGSPYTLYYLLVLIILNVVMLIWN KTNTLDVDIFDVWHSAFVGLFSMYSGAPLWLSTILVLFIGTLKIINSDLMKPTFNDLLDA PDSNPMTTTHMNYMMNPIIMVFDKLFDKIFPWLDKFDFDSAKLNEKIGFWGSRFAIGIYL GVFVSLLAGTDFTTEEGWKNMFTLSFTAGTCIELFSVIGSWFIASVEPLSQGISTFATKK FEGRTFNIGLDWPFIAGRSEIWAACNVLAPIMMLEAMVLPGNRLMPLGGIIGMGIAPALL VVTRGKIIRMIIIGALELPVFLWAGTLVAPFVTNVAHQVGAAIPAHTLVSDTTMEGPVEK FLGYLVGNAWSKQGMFIVYALLALAAYLLLFMWYAKQMKKRNAEYAAAKAKKD >gi|300497756|gb|AEAT01000010.1| GENE 6 5028 - 5342 569 104 aa, chain - ## HITS:1 COG:SP0646 KEGG:ns NR:ns ## COG: SP0646 COG3414 # Protein_GI_number: 15900549 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Streptococcus pneumoniae TIGR4 # 5 100 2 97 101 132 65.0 1e-31 MARQIKLLAACGAGVNSSHQIKDAVEAEMKARGHNVKCDAVMIKDVNEDLLNDYDAYLTI AKTDLAFTPKIPVVEAGPILYRIPAMAQPVYDEVEKICKKIEAE >gi|300497756|gb|AEAT01000010.1| GENE 7 5364 - 5852 641 162 aa, chain - ## HITS:1 COG:CAC2958 KEGG:ns NR:ns ## COG: CAC2958 COG1762 # Protein_GI_number: 15896211 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Clostridium acetobutylicum # 7 160 6 157 164 124 44.0 8e-29 MLTATKNDLFASDAVFISEQTDKEAVIREVYQKLLDRGYVKGDFIAHILEREKQYPTGID TSPISKDLPNVAIPHTEGEFVNTRMIVPIELVHPVKFHNMIEPDKELDVKFLFMILNNDP EGQANILAQIMDFLNSTPVEQLKQLFSSKSTSEIYEFLTEHF >gi|300497756|gb|AEAT01000010.1| GENE 8 6182 - 6946 787 254 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1643 NR:ns ## KEGG: LDBND_1643 # Name: not_defined # Def: membrane-bound protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 254 1 254 254 467 96.0 1e-130 MDARVKNQLSANPRQDRLHKRAEETNKYEQLKRLPADQLTGKLTKKNQNYLASLKQALKS EGGLDQTEAEDLTAPLLAKIIIAQEEGQTARRLFGLAPTDLARQLLKPKAEKKTESKWPY FSVVCLAFLAMFSILAGVYESITRGQLDPRRQIGWLTVLALALFMGWVVALYKDLVKAGI KRSHLQLWSIMSLVMTGALIWLLRLPVIRNVNPALPAPVCFIIAAGAIVILVFLMRHFKI SHIFFEERRKQAKQ >gi|300497756|gb|AEAT01000010.1| GENE 9 7143 - 8588 1748 481 aa, chain - ## HITS:1 COG:SA1991 KEGG:ns NR:ns ## COG: SA1991 COG2723 # Protein_GI_number: 15927769 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Staphylococcus aureus N315 # 6 470 5 469 470 509 54.0 1e-144 MTVYKLPEDFYFGGATAAYQVEGATKEDGKGEVIWDKYLREQGTINPDPAADFYHRYPVD LDLCKKFHINAIRVSIDWARIFPEGTGRLEERGVKYYHALFKKCRENGVEPFVTLHHFDT PQALEDKGGWLSSEMLDAFLAYAKYCFKEFPEVKYWITINEPTSMAGQQYVSGTFPPARV NEFAKCFQAEYNQNLVHARIVNAYKAGGYPGKIGIVHALQTVYPASSSAGDQHAAELKDA LENRFYLDGTLAGKYSKKTLDLVREIIEANGQEMIEIKAEDEEILAQAAQKLDFVGVNYY FSKFMKEYHGENIIHHNGSGEKGTDVNKMNGVGEEVHPEGMPATDWDWIIYPKGMYDQLK RVHDDYPGVKEIYITENGMGYKDKFLGPDKAIDDAPRIKYLQAHILEVAKAISDGIPVKG YFVWSLQDQFSWTNGYSKRYGLFYVDFASQARYPKQSAYWYRGLADSKQISTDEEVKGWT Y >gi|300497756|gb|AEAT01000010.1| GENE 10 8599 - 10296 2517 565 aa, chain - ## HITS:1 COG:SPy1917 KEGG:ns NR:ns ## COG: SPy1917 COG1455 # Protein_GI_number: 15675726 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pyogenes M1 GAS # 1 559 1 559 565 554 49.0 1e-157 MHALEARMNKMKPAFEKFAANKYVSAIRDGFIAAMPIILFSSIFSLIAYVPNAWGFYWPT AVANALVVPYNYSMGLLSLFVTATCAKNLTDSLNVKLPKTTQINSMSVIMAAEICFIIIA IVVNPKTGIDLSYMGTQGLIASYLVGCIVPNIYKFCITHNVRITMPDQVPQNIAQTFTDI FPMLFSVIIFWVLNLVLRTAFHANLSQCIVKLMSPLFHASDSYLGLALIAGAMAFFWFVG VQGPSIVMPAVSAIETTNVGLNTSLMHAGMHASHVLAVNTQDYVMNMGGTGSTLVLAFIF LLMSKSARNKAVGAASVIPVTFGVNEPILFGAPVIMNPIFFLPFVVTPMVNVMMFKFFVD VLKMNSFIATLPWTVPAPIGIVVGTGFAPLSFVYVLLALAVDVLIWYPFFHVYDNDILAQ EEAAEKAEKAEAAKAEKEAAPVAASSVKEAPKAAAKDVLTEDTNVMVICAGGGTSGILAK ALNKLAKEKDLPLHAVARAYGQHMDVIDDMDLIVLAPQMDSMRDNLQEVADKVGAKLVTT TGRQYIELTQKKDLALNFVVNSLKD >gi|300497756|gb|AEAT01000010.1| GENE 11 10431 - 11342 864 303 aa, chain - ## HITS:1 COG:SP1187 KEGG:ns NR:ns ## COG: SP1187 COG3711 # Protein_GI_number: 15901052 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Streptococcus pneumoniae TIGR4 # 18 297 1 277 278 179 37.0 7e-45 MLGNWNGDLLRKFKEEMLLKIVQVLNNNVAVVNGHDGKPAIVMGNGLAFGKKKGDVVEKE KVVSTFMLRDKHTVDDLTTLLEDVPADFVAVSYSLIEQSQKKYNFAVESYLYVTLTLHLY SAYQRLEEGRYRANYSLPDLSDKYPEAYKIADDFLTGFRERLRVDFPLSERNSIALHVIN AHGDRVSQAAPIDSLDDQLVNIINDILRKNGIVRNNDNLDDYGRLLTHVKYFARRLRKDR QEQEVQISASSLASIGNDFPEAEQIVNKIAGRIDYELGVKIPKLERLYLVIHIARLLDRK KQK >gi|300497756|gb|AEAT01000010.1| GENE 12 11554 - 11907 634 117 aa, chain - ## HITS:1 COG:SP0476 KEGG:ns NR:ns ## COG: SP0476 COG1447 # Protein_GI_number: 15900391 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 7 115 3 111 114 111 56.0 4e-25 MSEETISKEEISMTGFAIVAYAGDARTALLKAMDEASQGHISKAKDLVKDAEASINDAHN EQTKLLSKEAGGMDLDVTFIMVHGQDTLMTTMLLKDQMKTIIDLYDRVNQLEGKITD Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:04:45 2011 Seq name: gi|300497747|gb|AEAT01000011.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00080, whole genome shotgun sequence Length of sequence - 4119 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 3, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 725 - 784 8.5 1 1 Tu 1 . + CDS 810 - 1379 200 ## LDBND_0100 hypothetical protein 2 2 Tu 1 . - CDS 1554 - 2198 520 ## gi|300811267|ref|ZP_07091769.1| hypothetical protein HMPREF9264_0822 - Prom 2219 - 2278 5.5 - Term 2244 - 2289 3.5 3 3 Op 1 . - CDS 2294 - 2737 564 ## LDBND_0984 hypothetical protein 4 3 Op 2 5/0.000 - CDS 2777 - 3436 849 ## COG0534 Na+-driven multidrug efflux pump 5 3 Op 3 . - CDS 3526 - 3780 262 ## COG0534 Na+-driven multidrug efflux pump - Term 3802 - 3835 2.1 6 3 Op 4 . - CDS 3842 - 4087 268 ## LDBND_0986 hypothetical protein Predicted protein(s) >gi|300497747|gb|AEAT01000011.1| GENE 1 810 - 1379 200 189 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0100 NR:ns ## KEGG: LDBND_0100 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 189 1 189 189 270 85.0 2e-71 MDTTESITFTSKLTFWDKFKCFYLLHLYSLISLYNIKKWQRILGHLIYIFICIIVAITLF SDADLGSKLFVIFCFLSFFWIPAITSFKVARNIPNNLQLILTPGNATETSNTPSLKVRYS DTRIDRFKNAILFDTTNFYIIIYYNNVADKRVQLVYSIISKKQNNNILAKFNFVKTISPD LKKIIKLHI >gi|300497747|gb|AEAT01000011.1| GENE 2 1554 - 2198 520 214 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300811267|ref|ZP_07091769.1| ## NR: gi|300811267|ref|ZP_07091769.1| hypothetical protein HMPREF9264_0822 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] hypothetical protein HMPREF9264_0822 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 75 214 1 140 140 246 100.0 7e-64 MPKPPVQAICSLAARVICRKPVASSSLDRFKAPASNTRKGLDGPLSFLVIASQNGLNGAV PVVQTDLDGTRTVDMSIYADPSMLEMAEEAISKWNEALAKYKVKISATYTTSVRDLKKGV TIAVMESASNSEAISSYQRAGQSDITLERHAGLSMAVVRDILKGNGIGDVYNKSGTITAG DTLKNSLFTVQINTDGIRQTSANAKDATFKTLLL >gi|300497747|gb|AEAT01000011.1| GENE 3 2294 - 2737 564 147 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0984 NR:ns ## KEGG: LDBND_0984 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 147 1 147 147 206 95.0 3e-52 MHIVLTIISIIGLLLAIACLALLANTRKLLIGGADIDQFWPKRRRFMYWTNIFMLIPNAI YLFLAIASYFSADFEPTLLLTFSTMAMDLLIGISIIFTDYFITDEKISFKEFWSSSKTST KVYSISLILLVILTVILNLLIHAWGLD >gi|300497747|gb|AEAT01000011.1| GENE 4 2777 - 3436 849 219 aa, chain - ## HITS:1 COG:lin0003 KEGG:ns NR:ns ## COG: lin0003 COG0534 # Protein_GI_number: 16799082 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Listeria innocua # 9 206 234 431 447 119 35.0 6e-27 MVYDQAISKSILSLASLTALQQSIMNLGILMVQCRINSFGVNVMAAFSSAVKVDTLAYSP VQDFGNAYSTFVAQNYGAQQVDRIKQGNRQASWWILAFCLVISSLVVFWAKPLLALFSSD PEVIQIGIGYLRIEGSFYALIGFLFMFYGYFRAIDEPMISVVLTIFSLGTRVLLAYLLSA VPSIGYIGIWASIPIGWALADLAGLYYLHKKAVKPADCF >gi|300497747|gb|AEAT01000011.1| GENE 5 3526 - 3780 262 84 aa, chain - ## HITS:1 COG:CAC3354 KEGG:ns NR:ns ## COG: CAC3354 COG0534 # Protein_GI_number: 15896597 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Clostridium acetobutylicum # 9 83 7 81 452 70 45.0 9e-13 MSKNKSTIDLTSGHISLGLVKFALPLMAGNVLQQCYNLTDTLVVGRFIDKNALAAVGSAY TLMIFLTSIILGLRMGCGAFLSQP >gi|300497747|gb|AEAT01000011.1| GENE 6 3842 - 4087 268 81 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0986 NR:ns ## KEGG: LDBND_0986 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 81 60 140 140 117 98.0 2e-25 MVYLWNYWSSAFSATALTALLLFAGNLLLEFVIFCDDFLTDARYKSLWAYFKSLKKRQQF WLIAVVVITAFAGLINFFPAP Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:05:04 2011 Seq name: gi|300497745|gb|AEAT01000012.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00122, whole genome shotgun sequence Length of sequence - 776 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 774 902 ## COG5421 Transposase Predicted protein(s) >gi|300497745|gb|AEAT01000012.1| GENE 1 3 - 774 902 257 aa, chain - ## HITS:1 COG:MA3502 KEGG:ns NR:ns ## COG: MA3502 COG5421 # Protein_GI_number: 20092312 # Func_class: L Replication, recombination and repair # Function: Transposase # Organism: Methanosarcina acetivorans str.C2A # 95 209 168 289 517 73 32.0 4e-13 IIEDYKLAEHLKRWDDRGKGLLLDLAAYSVIAESNVAQHFPDYAYNHPLMTPQNKIYSDS TISRFIREIDDNDRVDFLNSWNATHDKNEKIYVSYDSTNKNCKAGDIEMAEYGHPKNDVG APIINYSIAYDMTNEKPLLYESYPGSIVDVSQLKYMLEKIRGYGYEKIGFILDRGYFSKS NIQFMDSCDYDFVMMVKGRASFVHSLIMEHMGEFESKRACSIKAYRTYGMTVKAKLYADD DTDRYFHVYYKAKKQAS Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:05:07 2011 Seq name: gi|300497734|gb|AEAT01000013.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00034, whole genome shotgun sequence Length of sequence - 13516 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 3, operones - 1 average op.length - 8.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 79 - 1422 349 ## COG3436 Transposase and inactivated derivatives + Term 1442 - 1480 8.6 - TRNA 1616 - 1704 71.0 # Ser CGA 0 0 + Prom 2378 - 2437 4.7 2 2 Op 1 . + CDS 2639 - 5251 1020 ## COG1203 Predicted helicases 3 2 Op 2 . + CDS 5254 - 6978 974 ## LDBND_0798 crispr-associated protein 4 2 Op 3 . + CDS 6997 - 7605 730 ## LDBND_0799 crispr-associated protein 5 2 Op 4 . + CDS 7623 - 8699 1273 ## LDBND_0800 crispr-associated protein 6 2 Op 5 . + CDS 8680 - 9381 487 ## LDBND_0801 crispr-associated protein 7 2 Op 6 . + CDS 9394 - 10017 295 ## LDBND_0802 crispr-associated protein 8 2 Op 7 . + CDS 10020 - 10970 501 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair 9 2 Op 8 . + CDS 10967 - 11839 323 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) 10 3 Tu 1 . - CDS 12088 - 12570 55 ## LCRIS_01228 hypothetical protein - Prom 12752 - 12811 3.5 Predicted protein(s) >gi|300497734|gb|AEAT01000013.1| GENE 1 79 - 1422 349 447 aa, chain + ## HITS:1 COG:SPy0131 KEGG:ns NR:ns ## COG: SPy0131 COG3436 # Protein_GI_number: 15674346 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 4 447 12 450 450 469 54.0 1e-132 MTRTCPRITETITYKRRKQVGRKQDILDSLPGEEVHHRLDDLTSPDRQHELKEIGSFCAR QELLYIPAQVKRIDHIQHSYKCQHCSDEAPADKIIKAPVPKAPLTNSLGSASLIANTIYQ KYVFKVPAYRQEKDLRRMGLPLDHKTVSNWHIKVCEYYLSSLYELLRKELLKLDVIHADE TPYRVLDSERAKDYVWTFLSGKHAKKPIVLYHHGSRKGAEAWDFLTGFSGYLHCDQYPGY LRLSQQDVTLVGCMAHARRKFHDSLPKDKTRESDAASVANQGIHYCNQMFSLERAWEDLS VEERYEKRQSELKPLLEKFSDWCSKKSISVLPSGKLGTAFQYCIKHMDKFMNVLKDGRLE LSNNRAERAVKEIVMGRKNWLFSQSSTGAKSMAIIMSILETAKQNGLDQFKYINYLLDKL SNELSLLDNQRLEAYLPWAENVQLHCK >gi|300497734|gb|AEAT01000013.1| GENE 2 2639 - 5251 1020 870 aa, chain + ## HITS:1 COG:ygcB KEGG:ns NR:ns ## COG: ygcB COG1203 # Protein_GI_number: 16130668 # Func_class: R General function prediction only # Function: Predicted helicases # Organism: Escherichia coli K12 # 93 727 156 789 888 212 29.0 3e-54 MLTTRICDAEMSKLVSFLCYIHDLGKATPAFQTKESYNHDHQLDEELIHRLVSHSFKRLN DLSLPSRSKSPHARAGEAILERAGLNETIAAIVGGHHGKPQNGDQEEQIDVFTSNYYQAD NDEEIQQPWKDVQRELIDYGLELAGYKGISEVPPVNQPEAVILEGLLITADWLASSTCLN NDPDKPMFNLIGLDQSFNDLDMKARYQNAISTWAINDAWIPEEVVNVDDYYEQHFSFKPR QIQAAMEEHVKEAVDPGLVIIEAEMGIGKTEIALTAAEQLAYATGRTGVYIGLPTQATTN AMFDRVNSWLTKIAGIEGINPDIKLLHGKAEWNSRYTDLPRAEDIEAEDLDAGTVTINSW FSGKKSILADFAVGTIDNLLLMGLKQKHLFLRHLGFSNKVVIIDEVHAYDMYMQSYLSKA LKWLGAYHVPVVILSATLPKEKRNELIKSYTKGKYRRVKKVLQAQEGWESNRAYPLLSLL DGKELRQYSDFGPKAEPREMQVNYINDEPTEVLAKVNDKIKDGGIAGIIVNTVKRAQEFA GLVGQDCQCLVLHSAFLATDRSRLEKELQSLIGKKGKRSDKLIVIGTQVLEQSLDIDFDV MFTDIAPIDLLLQRAGRLHRHKISRPKGLEKRQLYVMKPDSDDYGPANEAVYEKYYLQKT EHFLPQKIQLPNDISRLVQLVYDEDTDDQVENLDEARDKLNVDRNREKSKAESFQINDPV YPAAKNDLYDDTWVEELTIHRWLDRDKGNLDDNQVSAAVRDIRESIEVILLKEISGEYYL MNSDKVSEMVDKDLAKELIRLPNAVTPNIEQAINILEENTAQAFPDWQGSPWLKGSLAVV LDEHAKGSFNGYKLRYSTETGLSYEKEVDN >gi|300497734|gb|AEAT01000013.1| GENE 3 5254 - 6978 974 574 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0798 NR:ns ## KEGG: LDBND_0798 # Name: not_defined # Def: crispr-associated protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 574 1 574 574 1120 98.0 0 MESYNLITEPWIKVLDGKTNSEHMVSIKELLQNASDYRQLAGEMHVQDLAILRLLEAILT TVYTRVDQNDEEYEWVTLDEQMHVQSYDDEIEGSTLLQVLTKTWNALYKEGSFSEAVFDY LDKNKGLFDFFGDRPFYQVTAEQYDSFVPDNKKIAKGSGTVDLMQINRLISQSGNSVAIF APKSANRKNKLTLDELVRWVITYQNFTGVTDKTKVKAKEKMSNSRGWLYTLNPVYAQGNN LFETLMLNLLLFNPNKPTYTQQRPVWEEDLGEYVKRRLSQVKPDNFAETYTVWSRLLHIE WQDGTPTIFSAGLPAFDSANAYDIEPMSTWRMNKKDENYYPATRQLSSIGIAMWRNFGQY VDIEGHTESREPLTVAWLNYLKTKNELLNQQMINLHTSGIISNGGATSLMPAAEFDDNLR IEADVLFDETEDRKNAWPQRIEEMVDLNQEVGRKYYGFLMEVGRIRFGPQGAVDFAGRKS QTFYDNLNEPFENWLANLSGGDDRDEQQKFWKKQLKQIALRTLDDFLEIIAPRDISGIKA DKSQSGTKSTESNIFIAANKYRAGINKALNKNEK >gi|300497734|gb|AEAT01000013.1| GENE 4 6997 - 7605 730 202 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0799 NR:ns ## KEGG: LDBND_0799 # Name: not_defined # Def: crispr-associated protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 202 4 205 205 375 100.0 1e-103 MAFEIEKATERIIRQLYNNGDTDKASLSALRSAATIDGYRAQKVWPVFLSNLDEQWLSKN GKATREEAAIFAAVRMYALHQQASDSCVFGRRNYSDKKDEETNSRELFEALNWLKQGTDS HEALDRRVQALLGTNNYNAVIDQLVHLMQIIKSKKTGIQIDYARLAGDLYKFQFGYRQAN EVRLRWGEQYYHAFKKSDTNQQ >gi|300497734|gb|AEAT01000013.1| GENE 5 7623 - 8699 1273 358 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0800 NR:ns ## KEGG: LDBND_0800 # Name: not_defined # Def: crispr-associated protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 358 1 358 358 641 99.0 0 MTKNLYVDINVLQTVPSSNINRDDTGAPKTAFYGGVTRARVSSQSWKRAVRKAFAEDGAN IGTRTKRVPQMLAAKLQDLDASLDEDAAMSKAIDALKEGGIKTNKDNETGALLMVSPGQV AKLASYVLENETLDKKEVKKILMEGNSLDLALFGRMVADNPELNVDASAQVAHAISTHEI IPEYDYFTALDDLQEKEKSGAALIQTTQYDSATLYRYANINMAELSYNLGDEDAIEGALT FVKDFALSMPTGKQNSFANKTLPNYLMVTVRDDTPVNLVSAFESPVVAKAGEGYVENSVK KLENEYKDALQFVDQPLATVAVGKYETTVGEQAGNLQDLLDKLQDVLKKAVENEDFNN >gi|300497734|gb|AEAT01000013.1| GENE 6 8680 - 9381 487 233 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0801 NR:ns ## KEGG: LDBND_0801 # Name: not_defined # Def: crispr-associated protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 233 1 233 233 457 98.0 1e-127 MKTLTIKLTAPLQAYGNEASFERRTSWPAPSKSAVVGMIAAALGMRREDERIKSLNDLAY AVRVDQIGKTMTEFQTVEWKPGTRKLTYRDHYQDAVYVAAVGSEDEELIGKIEYALKHPR FQLYLGRRACPPAGVLRIESFADTDPVNVLKNMPWQAEKWYQNKHKRKAEFMAEIIADAN LLPDATFTQTVKDRVESFDPQDRCFGFRLTAKERINLKNPCYEQKSQDVMDYL >gi|300497734|gb|AEAT01000013.1| GENE 7 9394 - 10017 295 207 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0802 NR:ns ## KEGG: LDBND_0802 # Name: not_defined # Def: crispr-associated protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 207 1 207 207 418 99.0 1e-116 MYLSRVEIDTDNRQKIKDLSHLGAYHNWVERSFPAEIAEGERQRHLWRLDTLNGRNYLLL LSPEKPDLHELERYGKPGTAISKDYEPFLSRLSEGQLLQFKLTANPVRRGGKSSSHPGSL IPCFAVDEQMKWLQGKAEKKGFELVAAEVVGHDRPLLRKKTHVALNRTVFEGRLKISNLD QFKVMLTSGIGREKAFGMGLMTVIPVD >gi|300497734|gb|AEAT01000013.1| GENE 8 10020 - 10970 501 316 aa, chain + ## HITS:1 COG:ygbT KEGG:ns NR:ns ## COG: ygbT COG1518 # Protein_GI_number: 16130662 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Escherichia coli K12 # 19 272 12 265 305 190 38.0 4e-48 MKVEASYKKPDLTELGRTEDRITFLYIEHAKLYRKDGAVEVRDEEGIVYVPAAIISVLLL GPGVDVTHRAMELMGDSGMAVVWVGEQGVRQYAHGRALNRSSRLLEAQAKLVSNVRSRVA VARKMYQLRFPDEDVTKLTMEEMRGKEGARVRRVYREQAKKTGVKWSKREYKVDDFESGT PINKALTAAHQALYGLSYSVIVALGASPGLGFVHTGHDLAFVYDFADLYKADISIPIAFE TVAKYGDDDIASRTRHAMRDKFRETKLIKQMVVDLKHLLLGDADQDQDIDVMNLWDDKLG LQKFGVQYHEQQSDEE >gi|300497734|gb|AEAT01000013.1| GENE 9 10967 - 11839 323 290 aa, chain + ## HITS:1 COG:BH2418 KEGG:ns NR:ns ## COG: BH2418 COG2176 # Protein_GI_number: 15614981 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Bacillus halodurans # 125 285 418 581 1433 93 35.0 5e-19 MIVITLTKTPPALRGDLTRWCQEIQTGVYVGDVSARVRDKLWERVQTNIGNGEATLVYNT NNEQGYAFKTTRKSKQVVDLDGMLFVKHVVNQETVEYGFSNAAKFHKAHKAERMRVSVAA TKQKDFVAVDIETTGLNTESDQILSIGAVKHDGTEFYRLIKQDIDVPKQIVELTGITPAM LDKDGVPLQDVLGELTDFVGDVPIVGYNFRFDSAFLNREYRKCGMQELKNEIKDLLPVVK RKEKFLDNYKLQTVLSNYGIENKVPHNAVSDARATKELAMKLIKNRILVI >gi|300497734|gb|AEAT01000013.1| GENE 10 12088 - 12570 55 160 aa, chain - ## HITS:1 COG:no KEGG:LCRIS_01228 NR:ns ## KEGG: LCRIS_01228 # Name: not_defined # Def: hypothetical protein # Organism: L.crispatus # Pathway: not_defined # 49 153 3 107 140 69 40.0 4e-11 MGSPPLAWGILIWLDVVLCAYRITPTCVGNTQRHSKAIRTGKDHPHLRGEYSANVYQLCF CLGSPPLAWGIPVSCFCKSIVSRITPTCVGNTELQGRFLGVAEDHPHLRGEYKAKIYIDL ASAGSPPLAWGILVLNLKFVQLSGITPTCVGNTRSCRCGK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:05:35 2011 Seq name: gi|300497733|gb|AEAT01000014.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00143, whole genome shotgun sequence Length of sequence - 1371 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:05:38 2011 Seq name: gi|300497725|gb|AEAT01000015.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00083, whole genome shotgun sequence Length of sequence - 9014 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 6, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 38 - 1978 2789 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 2030 - 2089 6.3 + Prom 2102 - 2161 5.7 2 2 Op 1 5/0.000 + CDS 2269 - 3726 1851 ## COG1621 Beta-fructosidases (levanase/invertase) 3 2 Op 2 . + CDS 3743 - 4735 1408 ## COG1609 Transcriptional regulators + Term 4736 - 4769 2.0 + Prom 4756 - 4815 5.2 4 3 Tu 1 . + CDS 4856 - 5041 279 ## LDBND_1658 hypothetical protein + Term 5200 - 5250 9.0 - Term 5197 - 5229 4.0 5 4 Tu 1 . - CDS 5241 - 5771 173 ## PROTEIN SUPPORTED gi|229878290|ref|ZP_04497790.1| acetyltransferase, ribosomal protein N-acetylase - Prom 5815 - 5874 3.3 - TRNA 5884 - 5972 65.7 # Leu AAG 0 0 + TRNA 6124 - 6195 67.2 # Glu TTC 0 0 + TRNA 6199 - 6271 89.1 # Val TAC 0 0 + 5S_RRNA 6205 - 6256 92.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. - Term 6304 - 6342 3.1 6 5 Tu 1 . - CDS 6377 - 7855 1987 ## COG0498 Threonine synthase - Prom 7927 - 7986 7.4 + Prom 7928 - 7987 7.1 7 6 Tu 1 . + CDS 8023 - 8886 1014 ## COG0083 Homoserine kinase Predicted protein(s) >gi|300497725|gb|AEAT01000015.1| GENE 1 38 - 1978 2789 646 aa, chain - ## HITS:1 COG:SA2167_2 KEGG:ns NR:ns ## COG: SA2167_2 COG1263 # Protein_GI_number: 15927957 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Staphylococcus aureus N315 # 97 465 1 383 385 347 50.0 5e-95 MNYNAVAKRVIAAVGEDNLVAAAHCATRLRLVLKDDTKIDQAALDKDPDVKGTFKTDGQY QVIIGPGDVDNVYNELIKQTGLSEVSTDDLKKIAASGKKVNPVMAFIKLLSDIFVPIIPA LVAGGLLMALNNFFTSPGLFGPKSLVQINPAIKGLSEMIQLMSAAPFMFLPVLVGISAAK RFGANQFLGAAMGLIMTTPQLAGATHYWNIFGLHVAQTNYQYQVIPVLAAIWILAFLEKK LHKVLPSAVDFTFTPLLSIMITGFLTFTIVGPVMQTVSDWITNGFVWLYDTAGFIGMGLF GLCYSAIVMTGLHQSFPAIETQLLAAFAAGKGAGDFIFVVASMANVAQGAATFAIWFLTK NEKMKGLSSSAGVSALLGITEPALFGVNLKYRFPFFCALIGSGVASALAGLLHVEAASLG SAGFLGFLSIYPKTIPMYVVCELVSFAIAFALTFFWGKGHLKEEVASVEGETGVSASTEV PAEQQVEAAKTAGLEDEVVLAPVDGVSKDLSAVNDEVFSQKLMGNGAAIVPSDGNVYAPV TGTVSVAYKTGHAYGLKSDDGAEVLIHIGLDTVNLNGQHFKSLVTQGQHIEKGDKIGEVD LDAVKAAGYDTTVMVVITNSPSYNEVARVEATDVKHGDNLISLTAH >gi|300497725|gb|AEAT01000015.1| GENE 2 2269 - 3726 1851 485 aa, chain + ## HITS:1 COG:SP1724 KEGG:ns NR:ns ## COG: SP1724 COG1621 # Protein_GI_number: 15901557 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Streptococcus pneumoniae TIGR4 # 1 479 1 483 484 458 47.0 1e-128 MEWTREKRYLPYEKWDVKTLLELQSQAARSDYQLHYHIRPTSGLLNDPNGFSYYNGRWQV FYQAYPFGAVHGLKSWVHLTSSDLVHWENLGEAVYPDTPLDSHGAYSGSAKAIGDKLFLM YTGNVRDENWVRHSYQVGAWMDEEGKVTKLETPLINSPEHVTEHFRDPQILEHDGKYYAI LGAQDKETKAGKISLYKADAVTGPWQDLGYVDLPDMGYMVECPNLVFVDGKPVFIFCPQG LDKNVTDYQNVYPNMYWVGESFDFETGHFETKQKAPINLDEGFDVYATQAFNAPDGYAYA ISWVGLPDVTYPSDKEGWANCLSQVKRLALKHGRLLQKPVKAMKSLRGVEEDFTGDLAFD AGAQSELKLTIKQGQKGKLLLAADSEGKNCIKLRFKTGKHARLTVDRGECGQAVNPDYGT SRTVKLPAGEDLDLRIFVDHSLFEIFVNGGEEVITGRFFTQNGQTFVKMDSGVDYQAKTW RLKDM >gi|300497725|gb|AEAT01000015.1| GENE 3 3743 - 4735 1408 330 aa, chain + ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 3 330 1 321 321 320 50.0 2e-87 MTMRPKLTDVAEKAGCSPTTVSRVINNYGYISQKTRDRVYAAMRELNYQPNTLARSLQGK QTKMIGVIMPSITNPFFAELVAAIEDKLEADGYKMLLCDAGQDSDKERRYLRMLEANQVD GIIAGSHNLGIEEYQRYGLPIVSFDRDLSDQVPIVTSDNYQGGCLATQALVDAGCGHVYF VGNPVKTGNPTFRRFDGYADTVAAAGLTVHTARSAFYESPAAKARELRELLTSGRKIDGV FCSDDLTAILLLKEARKLGIRVPEDLKIVGFDGTQLVQNYVPELATVVQPVPDLAGTLVK LLYERIADPEKKLAQNSYLLPVKLLRNQTV >gi|300497725|gb|AEAT01000015.1| GENE 4 4856 - 5041 279 61 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1658 NR:ns ## KEGG: LDBND_1658 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 61 1 61 61 93 98.0 3e-18 MEKKKSVWLFILAFSLIGLLVYGAEIAYAFMKDRNKKMEYSFDEEEAEDPQEMEADYKNQ E >gi|300497725|gb|AEAT01000015.1| GENE 5 5241 - 5771 173 176 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229878290|ref|ZP_04497790.1| acetyltransferase, ribosomal protein N-acetylase [Slackia heliotrinireducens DSM 20476] # 3 173 4 174 181 71 26 3e-12 MTELNCRLATEADLAALCQFYQDICAHQKDDQFGADWHWGIYPSEKDIAEAIAQKRAVVG IKDGKIASAGILTVGNDPLYSKFAWPTPAEDNEIAVLHLYGVHPSFRRQGLSSVLLTFIK DQAKKLGCKSIRLDSMDGNVPARRLYEKNGWRFVSQETVYYDDIGDCKVDLLELAL >gi|300497725|gb|AEAT01000015.1| GENE 6 6377 - 7855 1987 492 aa, chain - ## HITS:1 COG:L0092 KEGG:ns NR:ns ## COG: L0092 COG0498 # Protein_GI_number: 15674085 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Lactococcus lactis # 3 491 5 495 496 456 51.0 1e-128 MIYRSTRSQGQEVTAAQAIVQGLSPDGGLFVPKEFPAPFSAAALKEIFALPYQDMAKKIL ALFLTDYSAEQLAEIVKGAYGQQWDDDRIAPLTDKKAGNYYLELFHGPTLAFKDVALQCL PRLMKTALENSDDHRGIVILTATSGDTGTAAMRGFQSLAKTRVIVFYPYQGVAPIQLKQM LSENSDNTVAVAVEGNFDQAQTRVKQIFNNSDMNSLLADHDLTFSSANSMNVGRLLPQVV YYFAAYKQLLDQEAIAFGDPVNFSVPTGNFGDILAGYYAQKLGLPVGRLICASNKNNVLT DFFKTGKYDKKRDFYVTNSPSMDILVSSNLERLLFDLCQDPATVKSLMEQLNTKGEYQLP EDMQKKLSSFWADYATPEEIEGEIKRVYEESNYVIDPHTAVASLAAKRFMEEDDKPTVVL STASPYKFPETVYHAISGQNVKEKGLPALKELTDLTGPAPKAMEAFLGHSSREIVIPADN MANEVKRQLDLD >gi|300497725|gb|AEAT01000015.1| GENE 7 8023 - 8886 1014 287 aa, chain + ## HITS:1 COG:SP1360 KEGG:ns NR:ns ## COG: SP1360 COG0083 # Protein_GI_number: 15901214 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 282 1 283 289 276 52.0 2e-74 MKIKVPASSANLGPGFDSIGVAISLYLAIEVIGESDHWQVDHNLGDLPSGKDNMIVQAAL SVKPDLTPQHLRVESDIPLAHGLGSSSSAIVGGIELADQLGQLNLAPHEKIEIAAQLEGH PDNVAPTILGSLVVGCKVNGHFTAVKAPVPPFAMIAYIPAYNLKTSDARAVLPKQLFFKE AVQASAVANTAVAALFAQDYEKAGELMEADLFHERYRSKLVPELEIIRNVGHEHGAVATY LSGAGPTIMSLVDPQHISDFVDAVREAGLKDEIRRLEVAPRGAFWQK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:06:01 2011 Seq name: gi|300497658|gb|AEAT01000016.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00023, whole genome shotgun sequence Length of sequence - 64472 bp Number of predicted genes - 65, with homology - 65 Number of transcription units - 16, operones - 12 average op.length - 5.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 38/0.000 + CDS 31 - 537 633 ## COG0711 F0F1-type ATP synthase, subunit b 2 1 Op 2 41/0.000 + CDS 537 - 1079 309 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 3 1 Op 3 42/0.000 + CDS 1102 - 2613 1806 ## COG0056 F0F1-type ATP synthase, alpha subunit 4 1 Op 4 42/0.000 + CDS 2624 - 3586 1302 ## COG0224 F0F1-type ATP synthase, gamma subunit 5 1 Op 5 42/0.000 + CDS 3606 - 5045 1307 ## COG0055 F0F1-type ATP synthase, beta subunit 6 1 Op 6 . + CDS 5057 - 5497 626 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) + Term 5500 - 5540 7.5 7 2 Op 1 . + CDS 5546 - 5776 316 ## LDBND_0644 membrane protein 8 2 Op 2 . + CDS 5847 - 6851 1691 ## COG1077 Actin-like ATPase involved in cell morphogenesis 9 2 Op 3 . + CDS 6854 - 7141 328 ## COG0759 Uncharacterized conserved protein 10 2 Op 4 . + CDS 7154 - 7381 377 ## LDBND_0647 hypothetical protein 11 2 Op 5 . + CDS 7406 - 8596 1764 ## COG0772 Bacterial cell division membrane protein + Term 8617 - 8665 10.4 - Term 8610 - 8647 0.0 12 3 Op 1 . - CDS 8668 - 9129 897 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 13 3 Op 2 . - CDS 9187 - 9471 358 ## LDBND_0650 hypothetical protein - Prom 9587 - 9646 3.7 - Term 9589 - 9641 1.0 14 4 Op 1 . - CDS 9823 - 11115 1764 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase 15 4 Op 2 . - CDS 11112 - 11576 597 ## LDBND_0654 hypothetical protein - Prom 11621 - 11680 4.8 - Term 11647 - 11682 5.1 16 5 Tu 1 . - CDS 11701 - 12312 1034 ## PROTEIN SUPPORTED gi|104773806|ref|YP_618786.1| 30S ribosomal protein S4 - Prom 12489 - 12548 7.2 + Prom 12306 - 12365 8.7 17 6 Op 1 3/0.000 + CDS 12609 - 14327 2443 ## COG4477 Negative regulator of septation ring formation + Term 14373 - 14404 2.5 + Prom 14334 - 14393 5.0 18 6 Op 2 7/0.000 + CDS 14413 - 15570 1520 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 19 6 Op 3 . + CDS 15591 - 16790 1739 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase 20 6 Op 4 . + CDS 16790 - 17515 771 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Term 17733 - 17770 4.7 + Prom 17651 - 17710 2.3 21 7 Op 1 8/0.000 + CDS 17777 - 20416 4056 ## COG0525 Valyl-tRNA synthetase 22 7 Op 2 . + CDS 20421 - 21686 1221 ## COG0285 Folylpolyglutamate synthase 23 7 Op 3 . + CDS 21689 - 22384 907 ## COG0637 Predicted phosphatase/phosphohexomutase 24 7 Op 4 4/0.000 + CDS 22433 - 23047 850 ## COG2003 DNA repair proteins + Prom 23049 - 23108 6.3 25 7 Op 5 22/0.000 + CDS 23138 - 24142 1431 ## COG1077 Actin-like ATPase involved in cell morphogenesis + Term 24150 - 24187 7.1 26 7 Op 6 . + CDS 24220 - 25044 1372 ## COG1792 Cell shape-determining protein 27 7 Op 7 . + CDS 25044 - 25583 957 ## LDBND_0667 hypothetical protein + Prom 25776 - 25835 4.6 28 8 Tu 1 . + CDS 25880 - 26209 358 ## LDBND_0669 hypothetical protein + Term 26217 - 26255 8.3 + Prom 26246 - 26305 4.0 29 9 Op 1 29/0.000 + CDS 26341 - 26772 660 ## COG2001 Uncharacterized protein conserved in bacteria 30 9 Op 2 . + CDS 26775 - 27719 1181 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 31 9 Op 3 . + CDS 27731 - 28087 476 ## Ldb0737 cell division protein FtsL 32 9 Op 4 4/0.000 + CDS 28087 - 30249 3256 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 33 9 Op 5 28/0.000 + CDS 30257 - 31219 1388 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 34 9 Op 6 4/0.000 + CDS 31226 - 32608 2095 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 35 9 Op 7 3/0.000 + CDS 32610 - 33722 1669 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 36 9 Op 8 25/0.000 + CDS 33746 - 34591 993 ## COG1589 Cell division septal protein 37 9 Op 9 35/0.000 + CDS 34572 - 36032 1611 ## COG0849 Actin-like ATPase involved in cell division 38 9 Op 10 . + CDS 36048 - 37406 1989 ## COG0206 Cell division GTPase 39 9 Op 11 . + CDS 37421 - 37867 695 ## COG1799 Uncharacterized protein conserved in bacteria 40 9 Op 12 . + CDS 37867 - 38169 526 ## LDBND_0681 cell division membrane protein 41 9 Op 13 . + CDS 38169 - 38966 732 ## PROTEIN SUPPORTED gi|58337123|ref|YP_193708.1| cell-division protein + Term 39197 - 39224 -0.1 + Prom 39002 - 39061 7.2 42 10 Op 1 . + CDS 39287 - 42082 4357 ## COG0060 Isoleucyl-tRNA synthetase 43 10 Op 2 . + CDS 42082 - 42291 91 ## LDBND_0684 cold-shock DNA-binding protein family 44 10 Op 3 . + CDS 42307 - 42864 524 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 45 10 Op 4 . + CDS 42868 - 43086 87 ## LDBND_0686 hypothetical protein 46 10 Op 5 . + CDS 43106 - 43804 846 ## COG0775 Nucleoside phosphorylase 47 10 Op 6 . + CDS 43804 - 44967 1538 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 48 10 Op 7 . + CDS 45022 - 45363 640 ## LDBND_0689 hypothetical protein 49 10 Op 8 . + CDS 45368 - 46495 1687 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain + Term 46496 - 46544 13.6 + Prom 46509 - 46568 4.5 50 11 Op 1 . + CDS 46595 - 47254 769 ## COG0406 Fructose-2,6-bisphosphatase 51 11 Op 2 . + CDS 47254 - 47907 913 ## LBUL_0690 TPR repeat-containing protein 52 11 Op 3 . + CDS 47921 - 50311 3145 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Term 50331 - 50367 3.4 + Prom 50377 - 50436 6.3 53 12 Tu 1 . + CDS 50480 - 51829 479 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 51834 - 51863 1.4 - Term 51822 - 51851 1.4 54 13 Op 1 7/0.000 - CDS 51869 - 53482 2570 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 55 13 Op 2 1/0.000 - CDS 53538 - 53771 389 ## COG5503 Uncharacterized conserved small protein - Prom 53866 - 53925 5.5 - Term 53897 - 53941 5.2 56 13 Op 3 . - CDS 53950 - 54573 886 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 54648 - 54707 7.6 + Prom 54473 - 54532 5.9 57 14 Tu 1 . + CDS 54728 - 56599 2428 ## COG1217 Predicted membrane GTPase involved in stress response + Term 56618 - 56661 5.2 + Prom 56611 - 56670 7.3 58 15 Op 1 . + CDS 56698 - 57900 1455 ## COG0772 Bacterial cell division membrane protein 59 15 Op 2 . + CDS 57890 - 58231 490 ## LDBND_0701 hypothetical protein 60 15 Op 3 14/0.000 + CDS 58228 - 58779 366 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 61 15 Op 4 4/0.000 + CDS 58780 - 59274 305 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 62 15 Op 5 . + CDS 59264 - 60304 416 ## PROTEIN SUPPORTED gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 + Term 60324 - 60362 6.9 + Prom 60333 - 60392 3.8 63 16 Op 1 4/0.000 + CDS 60434 - 61186 922 ## COG1555 DNA uptake protein and related DNA-binding proteins 64 16 Op 2 4/0.000 + CDS 61140 - 63398 2015 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 65 16 Op 3 . + CDS 63429 - 64418 1195 ## COG1466 DNA polymerase III, delta subunit Predicted protein(s) >gi|300497658|gb|AEAT01000016.1| GENE 1 31 - 537 633 168 aa, chain + ## HITS:1 COG:lin2677 KEGG:ns NR:ns ## COG: lin2677 COG0711 # Protein_GI_number: 16801738 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Listeria innocua # 9 168 9 168 170 95 36.0 5e-20 MEFQPVFAGAEISIIDTLWYLIVFSILLLAVKHYAWGPVKDMMEKRRQKVIDDLDQAASD RKKAETLANEREAALKNSRQEATQILSVAKSNAQKTGKQIVSEAKAEASAIREKAKADAA KAKTDALNEAREEVADLSVTIAEKVIAKNLSAADQKDLVDQFIKGLND >gi|300497658|gb|AEAT01000016.1| GENE 2 537 - 1079 309 180 aa, chain + ## HITS:1 COG:lin2676 KEGG:ns NR:ns ## COG: lin2676 COG0712 # Protein_GI_number: 16801737 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Listeria innocua # 7 174 6 173 179 84 30.0 1e-16 MALSREETARRYGTAIFDFAKDSGKTELMYSELTELKKAVQAEPRFVQVLSNPVLDTKQK ESLLTAVEQGFSAELQEVLNFLLSYDRFDNLVDIIDYYIHLYNAANHIGTGVAKTALKPD EDQLQRLAESYAKKYGLQALHLENEVDPEIIGGVVLEVEGRVIDGSVKHRLEKIRAMLTK >gi|300497658|gb|AEAT01000016.1| GENE 3 1102 - 2613 1806 503 aa, chain + ## HITS:1 COG:lin2675 KEGG:ns NR:ns ## COG: lin2675 COG0056 # Protein_GI_number: 16801736 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Listeria innocua # 1 503 1 503 504 759 75.0 0 MSIKAEEISSLIKQQLEHYDDKLDIEEVGVVTYVGDGIARAHGLNNVLSSELLQFDNGAY GIAQNLESNDVGIIILGKFDDIREGDRVKRTGRIMEVPVGDALIGRVVNPLGQPVDGLGE IKTDKTRPIESKAPGVMQRQSVNQPLQTGIKAIDALVPIGRGQRELVIGDRKTGKTSLAI DTILNQKGQDVICIYVSIGQKESTVRAQVETLKKFGAMDYTIVVEAGPSEPAPMLYIAPY SGTAMGEEFMYAGKDVLVVFDDLSKQAVAYRELSLLLRRPPGREAYPGDVFYLHSRLLER SAKLSKELGGGSLTALPFIQTEAGDISAYIPTNVISITDGQIFLQSDLFFSGTRPAIDAG ASVSRVGGAAQIPAMKKVAGTLRTDLASYRELESFAQFGSDLDQATQAKLARGRRTVEVL KQPLHKPVAVEKQVVLLYALTHGFMDAVPVDDIARFEQELYTDFDANHADLLAEIKSTGK LPDENKLQEALQQFASSFSSSNK >gi|300497658|gb|AEAT01000016.1| GENE 4 2624 - 3586 1302 320 aa, chain + ## HITS:1 COG:SP1509 KEGG:ns NR:ns ## COG: SP1509 COG0224 # Protein_GI_number: 15901356 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 320 1 292 292 248 45.0 1e-65 MPASLLELKKRIASVKQTSKITEAMHMVSAAKLNQTEKRDKGYQEYNLLLHQTVSRLMSA SVINHLNKANYRLTQDNIDSIDYDDVFGMGIISDMIKPREEVHSVGYLVVTGDRGLVGSY NSSVIKQMMSLVADDKLQGRESKILSVGSVGSQFFKKNNLNVVYEKDGVSDVPTFKETLP IVSTAIKMYLNGVYDELYVCYTHHVNSLSSAFRAEKMLPIVDLDIGTMEAKESKKIEFEV APDIDSVLATLLPQFARAEIYGAILDAKTAEHASSMTAMKNATDNAKDLVSSLSLQMNRA RQAQITTELTEIVSGANALE >gi|300497658|gb|AEAT01000016.1| GENE 5 3606 - 5045 1307 479 aa, chain + ## HITS:1 COG:SPy0760 KEGG:ns NR:ns ## COG: SPy0760 COG0055 # Protein_GI_number: 15674808 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 465 1 467 468 708 78.0 0 MSQGEIVQVIGPVVDVKFPIGKDLPDINNALKVIKSDDDSIILEVTLEQGDGVLRCIAME STDGLRRGMKVEDTGSSISVPVGPDTLGRVFNVLGQPIDGGPEFPAAHPRSGIHKEAPKY DELTTSREILETGIKVIDLLEPYLRGGKVGLFGGAGVGKTTIIQELIHNIAQEHNGISVF TGVGERTREGNDLYFEMKASGVLDKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQ DVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGQLQERITSTKKGSITSIQA VYVPADDYTDPAPATTFAHLDATTNLERSLVEQGIYPAVDPLESTSSALDPEIVGQEHYD VATRVQHILQRYRELQDIISVLGMDELSDEEKLIVARARRIQFFLSQNFFVAEVFTGVPG SYVPIKETIKGFKMILDGHLDDLPEDAFRGVGPIEEVLKKALKMGVTPSDPEAKALLEK >gi|300497658|gb|AEAT01000016.1| GENE 6 5057 - 5497 626 146 aa, chain + ## HITS:1 COG:SP1507 KEGG:ns NR:ns ## COG: SP1507 COG0355 # Protein_GI_number: 15901354 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Streptococcus pneumoniae TIGR4 # 10 140 6 135 139 115 54.0 3e-26 MAEAEKLFKINIVTPNGLIYSHRGSSVSMRAIDGDRQILYNHLPILTPLTVGEVRVQRGA DVDHKVDHIAVSGGIIEFANNVATIIADNAERARNIDLSRAEAAKQRAEALIKEAKEKHD EQLLERAQIALRRAVNRIHVYDEQHK >gi|300497658|gb|AEAT01000016.1| GENE 7 5546 - 5776 316 76 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0644 NR:ns ## KEGG: LDBND_0644 # Name: not_defined # Def: membrane protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 76 1 76 76 99 100.0 3e-20 MRQLGIHAIISLVIYFVCIALAFQAIKAVRIEKIIRTSRVFEAQVFLIFTAIALGYTVGQ FLIALIDTSLQLSNLF >gi|300497658|gb|AEAT01000016.1| GENE 8 5847 - 6851 1691 334 aa, chain + ## HITS:1 COG:BH3739 KEGG:ns NR:ns ## COG: BH3739 COG1077 # Protein_GI_number: 15616301 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Bacillus halodurans # 8 330 4 326 334 395 62.0 1e-110 MEEIDVSKDIGIDLGTANVLINVSGKGIVIDEPSVVAVDTNTNKVVAVGTEAYEMVGRTP GNIRVIRPLKDGVIADFDITEAMLSYFIEKLNVKGFMSKPNILVCTPTGVTSIEQKAIIQ AAEKSGGGKVYLDYEPKVAAVGAGLDIFKPQGNMVIDIGGGTTDIAILSMGEIVTSKSLR YAGDRMNQAIVNYIKANHQLLIGMRTAEAIKIEIGAATDPDPDASMNVRGRDTIDGLPKQ IKVNSSEVTEALQEGLQSIIDTTKQVLQETPPELSADIIDRGIMITGGGALLKNIDKLIA DSLQVPVLIAESPLESVALGTGILLQHIEKHERH >gi|300497658|gb|AEAT01000016.1| GENE 9 6854 - 7141 328 95 aa, chain + ## HITS:1 COG:SPy0370 KEGG:ns NR:ns ## COG: SPy0370 COG0759 # Protein_GI_number: 15674519 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 1 77 1 76 86 104 61.0 5e-23 MRQIMILLVRFYQRAISPILPDSCRFYPTCSSYMITALEKHGPLLGLLMGLARILRCNPF NRGGVDPVPDKFTLLRNPHPEEYEDEIIARKFHSH >gi|300497658|gb|AEAT01000016.1| GENE 10 7154 - 7381 377 75 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0647 NR:ns ## KEGG: LDBND_0647 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 75 1 75 75 136 94.0 3e-31 MSRNQKNIGIEVNELSDRQAPTWEVVIPKKRQIGLIEQVDGKFRVTSSKSKNVMFAKSLD AGINDLLAYFTLHEK >gi|300497658|gb|AEAT01000016.1| GENE 11 7406 - 8596 1764 396 aa, chain + ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 13 384 14 387 414 291 45.0 1e-78 MAKVQEESKWYDRIAWGVIIPVVLLSFVSFYSIYNASVNDSTYGTPTRTVAMQIVWYTVS WLMVAFIVRFDAEQIFKLAPYLYGLGILMLVAVLFLYDRTTAASSGAKSWFVVGPVSFQP SEVMKPAFILQLARVVRDHNARYAHNLRNDWLLIGKVMAWFLPVAMLLMLQPDFGTTLVF VAITAGILLVSGISWKIIIPVFLLMVVVGVAVILLVFTSEGQTILRHYFKTYQLERIKSW SDPSGDNSNSAYQLWQSMKAIGSGQIFGNGFNNIKVYVPVRNSDMIFSVVGESFGFVGGV ALIGIYFVLIVQMVKITFSTKNAFYSYVSTGIIMMILFHVFENIGMSIDLLPLTGVPLPF VSQGGSALIGNMIGIGLILSMKWHNKDYMFSTAGDF >gi|300497658|gb|AEAT01000016.1| GENE 12 8668 - 9129 897 153 aa, chain - ## HITS:1 COG:SP1996 KEGG:ns NR:ns ## COG: SP1996 COG0589 # Protein_GI_number: 15901819 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Streptococcus pneumoniae TIGR4 # 6 152 4 150 150 143 51.0 1e-34 MTKQYQYKHIQVAVDGSKEADLAFKKAVTVAKHMNASLEILHVIDTRSFQNVSSFDSAMV EQVSNDAKKKMEKYYQSAQDSGVKEVHYSIEFGSPKVIISREFPKKHDIDLIVVGATGLN AVERLLIGSVTEYVTRTADCDILVVRHNKAGLD >gi|300497658|gb|AEAT01000016.1| GENE 13 9187 - 9471 358 94 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0650 NR:ns ## KEGG: LDBND_0650 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 94 1 94 94 132 98.0 7e-30 MLYIRIFMIIFIACLLLTAWYLWHRRNGAFLVFDVSSSPELHSLMTICSWTLLAISVLGI VLLFFDNKYLNLITLFLGSAAIFIFALLLSQNNQ >gi|300497658|gb|AEAT01000016.1| GENE 14 9823 - 11115 1764 430 aa, chain - ## HITS:1 COG:lin1549 KEGG:ns NR:ns ## COG: lin1549 COG2256 # Protein_GI_number: 16800617 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Listeria innocua # 1 421 3 421 427 525 62.0 1e-149 MKPLAYRMRPQSIDQVVGQQHLVGPKKIIRRMVEARQLSSMILYGPPGIGKTSIASAIAG SSKYAFRQLNAATDGQKELSQVAAEGKMSGTVVLLLDEIHRLNKVKQDFLLPLLESGQVI MIGATTENPYLAISPAIRSRCQIFELKPLTEEEILTAVDRALTDEERGLGKYHAKLTKEA GEFLAQKGNGDLRATLNSLELAVLSTKQELEAEGKDAFSFTVTLDDMADSLQMKIQNFDA DGDGHYDLLSAFQKSIRGSDTDAGLHYLGRLLESGDLVSICRRLSVIAYEDIGLANPPAC ERAILAVQAAQQLGLPEARIPLANAVIELCLSPKSNSAMTAIDAALADIRQSNVDQLKDA HYKGASKLGHGTGYLYPHDYPGDWVAQAYLPDRMQGKQYFAPKGESKFEAAFKSQYQRLH DLQKAGLNGK >gi|300497658|gb|AEAT01000016.1| GENE 15 11112 - 11576 597 154 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0654 NR:ns ## KEGG: LDBND_0654 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 154 1 154 154 296 99.0 1e-79 MTEDLAKRVENAANGITPQTRPDERRRFLGSLRERVFVRMTIKDCEDAKLTKLFMDHFAD YKGYTILINANTPNPTFVGQIESRASKEQVPFCLVNDESARKGDDDSAILVVSKEAINRM RIELTQVYAPPLPAEKLPAPKKKGFLARFFGGNK >gi|300497658|gb|AEAT01000016.1| GENE 16 11701 - 12312 1034 203 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773806|ref|YP_618786.1| 30S ribosomal protein S4 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 203 1 203 203 402 98 1e-111 MSRYTGPSWKRSRRLGISLSGTGKELARRSYVPGQHGPNHRGRLSEYGMQLHEKQKLRWM FGLSERQFRTLFARAGKIREGQHGTNFMILLERRLDNVVYRLGLATTREQARQLVNHGHI TVDGKRVDIPSYEVKVGQTISLKEKSKNLQQVKDALEAVASRPSFVSFDEDKMEGQLVRF PERDEMEPEIDEALVVEYYNKLL >gi|300497658|gb|AEAT01000016.1| GENE 17 12609 - 14327 2443 572 aa, chain + ## HITS:1 COG:lin1636 KEGG:ns NR:ns ## COG: lin1636 COG4477 # Protein_GI_number: 16800704 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Listeria innocua # 8 563 4 561 571 190 23.0 6e-48 MSSTQSLLLITLIITIIVVVMAMLLINRRQLRDIEELDNELGNMEDLHLERAIGKLDQME LAGESLATLNTWKKSYQKAAELFPEIQRLIEDGADENARYRLVKSHQSIKQARELVDSVS EDVKNSSDVFTQLLESNRENKAQYDELMQSYREIRKEILADSFDYSVALEEIENRLSAME EDFAQAKNLSAQGDHVEAKRVLSKIRADLTALKTKLPEVKEDQHDLQTVFADQLDEIAAG YKEMRDAKYGFGSLDVLLEIRQSNDQIDRSLAALAQLDLEETSKGMKKVEKEIKTLYRIL EKEYKARPFVEKNQDKLQRLLTHQQTVSQQLIKKLRHIDESYELTHGELDESRELEREVH KMDSDYIRASQRIADGRAVYSEVQDDWIKILGRLQEIGKRQQELSEAVDGLYEAEEVAQR SIKEFKQQVSLVYRHLSRQNLPGIPEGFLQMYTLVINEISKTSGELNQVRINMEKISEEL VQISDDVDRLQREAEDIISSANLFELTMQYSNKFLDNETVVRARRNAMKLYDRDYNYKDA LDTIATAVERAEPGSYQRIENAYYQEQKELID >gi|300497658|gb|AEAT01000016.1| GENE 18 14413 - 15570 1520 385 aa, chain + ## HITS:1 COG:L122222 KEGG:ns NR:ns ## COG: L122222 COG1104 # Protein_GI_number: 15672519 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Lactococcus lactis # 1 381 1 380 381 395 53.0 1e-110 MIYFDNSATTKMAPEALETYSQVVTKIWGNPSSLHKLGDRAHGLLEASRKQVADLLGVNT DEIYFTSGGTESNNTAIKGTAWAKREFGKHIITSSVEHASVANTFTELENLGFRVTRLPV DKEGRVNPEDLKAALDKDTTLVSIMGVNNEIGTIQPIKEISEILADYPNIHFHVDNVQAL GKGIWDQVFTSRVDMMSFSSHKFHGPRGIGILYKKRGRMLMPLCEGGGQEKGLRSGTENL AAIAAMAKAARLLLTDEKEKADREYAIKEKISKYLAGKPGIHIFSPLKADFAPHILCFAL EGIRGETLVHTLEDQDIYISTTSACASKKADEASTLVAMKTPDAIATSAVRLSFDESNTL EEADEFIAAFDEIYQHFAKINHLGE >gi|300497658|gb|AEAT01000016.1| GENE 19 15591 - 16790 1739 399 aa, chain + ## HITS:1 COG:SPy0817 KEGG:ns NR:ns ## COG: SPy0817 COG0301 # Protein_GI_number: 15674858 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Streptococcus pyogenes M1 GAS # 1 383 7 389 404 466 58.0 1e-131 MIRYGELSTKGKNRKDFINRLASNVQKVLHDFPDLKIQTHHDRMHILLNGTPFEPVNDRL KVVFGIQTYSPVIKTEKSLEAIEKTALELMQATYKAGMTFKVNTRRSDHKFIYDTNQLNQ MVADYLYNHMEGLQAEMKHPDMVLLLEIRQDGAYISNQLLHGAGGMPVGTAGKAVMMLSG GIDSPVASYLAMKRGVNIEMVHFFSPPYTSEKALAKAKELTSILAKYSGRINFIEVPFAE IQETIKEKLPEGYLMTVQRRFMLRLADIIREKRHALAIFNGESVGQVASQTLESMAAIND VTTTPVLRPVATMDKTEIIAKAEEIGTFDLSIQPFEDCCTIFAPPRPKTKPKIDKAREYE SRLDVDGLIERALAGVKVTPIYPGQSFLDDLAEEDADLL >gi|300497658|gb|AEAT01000016.1| GENE 20 16790 - 17515 771 241 aa, chain + ## HITS:1 COG:SP0280 KEGG:ns NR:ns ## COG: SP0280 COG1187 # Protein_GI_number: 15900214 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Streptococcus pneumoniae TIGR4 # 2 237 1 236 240 219 50.0 3e-57 MLRLDKFLANMKVGSRSQVHEIIKAGQVTVNGKVCRSAKQKVKEDAEVLVNGQAVVYQQY HYFLLNKPAGVLSATEDSRQKTVLDLLKDQDRYQKIAPVGRLDKDTTGLLLLTNDGQLAH QLLAPEYHVPKTYYALLAGVADEETAKAIAAGLTLKDGTELKPGQLKILRQDKDQEQSEI EITITEGKYHQVKRMFASQGMKVLKLKRLSMGPLTLPADLAPGSYRPLTEEELAALKQVA L >gi|300497658|gb|AEAT01000016.1| GENE 21 17777 - 20416 4056 879 aa, chain + ## HITS:1 COG:SA1488 KEGG:ns NR:ns ## COG: SA1488 COG0525 # Protein_GI_number: 15927242 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 3 876 2 875 876 1174 62.0 0 MTELAPKYNPQEVEAGRYQEWLDEDLFKPSGDKKAKPYSIVIPPPNVTGKLHLGHAWDTA IQDTLIRYKRMQGYDTLYLPGMDHAGIATQAKVEARLREQGVSRYDLGREKFMEKVWEWK DEYANIIKSQWQKLGLSLDYSRERFTLDKGLSKAVRRVFVQLYNEGLIYRGEYIINWDPK LRTALSDIEVVHQDDQGAFYHINYPLADGSGSVEIATTRPETMFGDTAVAVAPGDERYKD LVGKKLILPLVGREIPIIEDQHVDPEFGTGLVKITPAHDPNDFEVGNRHDLPRINVMNDD GTMNDKAGKYAGMDRFDCRKQLVEDLKAEGYLIKVEPIVHSVGHSERSGVQVEPRLSTQW FVKMKPLADKVLENQKGEGRVNFVPDRFEGTLERWMENVHDWVISRQLWWGHRIPAWYNK QTGEMYVGEEAPADIENWDQDQDVLDTWFSSALWPFSTLGWPDEDSADFKRYFPTNALVT GYDIIFFWVSRMIFQSLHFTGERPFDNVVLHGLIRDEQGRKMSKSLGNGIDPMDIIDKYG ADALRWFLLNGTAPGQDTRFSYTKMDAAWNFINKLWNASRFVIMNLPEDAKPAQKPDTSK FDLADAWIFDRLNHTVKETNRLFDEFQFGEAGREMYNFIWNDFCDWYIEISKVALYGDDA ELKARKQANLTWILDQILRLIHPIMPFVTEKLWLSMPHEGKSIMTAAYPEAHAEFNNAKA NEDMAFLIEIIKAVRTIRMEVNAPMSSAIDILIQLDDEKNEAILRDNMEYVENFLHPKKL EISGKIKAPKLAKTAVIAGAQIFVPLSELVDLDEEIAKMGKEEARLEAEVDRASKKLANK GFVDHAPAAVVEKEKGKLAEYESQLAGVRDRIKELKESR >gi|300497658|gb|AEAT01000016.1| GENE 22 20421 - 21686 1221 421 aa, chain + ## HITS:1 COG:L0177 KEGG:ns NR:ns ## COG: L0177 COG0285 # Protein_GI_number: 15673139 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Lactococcus lactis # 5 419 2 424 427 209 31.0 1e-53 MKFRTVNELTAYLYHLPRLHEKSDLTYVKRVLKALGDPQDKVKCCHITGTNGKGSTAYYL SNLLQKAGQQTGLFVSPFIIRFNERIQLNGQAIADEDLLEVANEVEAAVGHLREEETDFA LVTFEYEVAMAFLFFAKQKCDYAVIEVGIGAEHDKTNVMTPVVSLITTIGLDHEQIIGPT LADIAKEKSGIIKPAVPVILGDIPASVKGIVEEKITESASPSYWLGRDFQVKEEKAGYEL AVAGQNYQLPAWPLPEAKDAAMALAAFALLPLALSEKAAEAALTQTTVPGRYQRLEKAGC SFLLDGAHNVQAGSELLPYARRLAKDKGGRLLVLAGMMKDKDLSDFLTLLKDEKVTLTSL AYPRAAKKADFPAWVQEKFAYEGDLGQALKQVMAEAGDRDLILVTGSFYLVSAVLQLLQS A >gi|300497658|gb|AEAT01000016.1| GENE 23 21689 - 22384 907 231 aa, chain + ## HITS:1 COG:CC2096 KEGG:ns NR:ns ## COG: CC2096 COG0637 # Protein_GI_number: 16126335 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Caulobacter vibrioides # 16 205 8 192 221 110 35.0 2e-24 MKGENMRVAGLKMDKQGVIFDMDGLLVNSEELYWQANIQAAREYKLGISDDAYLDLVGAS VKAMDAFYEKYFPNDEVRQAFVKRTDDLVWEWTDQGKLKLKAGVKEALEYFNDLGLTVGI ASNNYKSVVDHNLWVTGCRNSFDFIVTHDEVAEKKLRSKPFPDLYLAAQERSGLGKDQLL IFEDSSMGVEAAENAGIDCVMIPDIKPASAEDRARAQLICPDFFDFLKKIS >gi|300497658|gb|AEAT01000016.1| GENE 24 22433 - 23047 850 204 aa, chain + ## HITS:1 COG:radC KEGG:ns NR:ns ## COG: radC COG2003 # Protein_GI_number: 16131509 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Escherichia coli K12 # 71 201 91 221 224 104 38.0 1e-22 MTETTQNYYYVESDRDLLKLLFDQLPCQSLEDLLQLLDQKHIASFKDILDYASGPDCPND LALTIEVAMDRLRRTDMRRSSDWASSSKIGNYLANKLLGQKQEQFWVLYFDQQQNLLGEK MLFQGTLDRSWVHPREIFRWAMVYGCASIIVAHNHPSGALTPSDNDLELTKGLKKASKIM KITFLDHFIIGGGEYLSLRERELF >gi|300497658|gb|AEAT01000016.1| GENE 25 23138 - 24142 1431 334 aa, chain + ## HITS:1 COG:BS_mreB KEGG:ns NR:ns ## COG: BS_mreB COG1077 # Protein_GI_number: 16079855 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Bacillus subtilis # 1 334 1 337 337 403 64.0 1e-112 MFGLGSKNIGIDLGTANTLVYVEGKGIVLREPSVVAKNTKTGEVIAVGSEAKEMIGRTPG SIVAIRPMKDGVIADYDTTAAMLKYFMGKTVGNSKPSVMICVPSGVTEVEKRAVIDAARV AGAREAYVIEEPFAAAIGAGLPVMEPTGSMVVDIGGGTTDVATISLGGIVSSTSIRQAGD KFNQAITNFVHGKYNLLIGERTAEDIKIQIGSASVEAAKEIESMTIRGRDLVSGLPKSLE ISAVDVATAIQDVVQDIIVAIKETLELTSPEIAADVIDHGIVLTGGGALLKNLPEVISDA TKVPVFIAQDPLDCVAIGTGESLKHLDVMRKTSR >gi|300497658|gb|AEAT01000016.1| GENE 26 24220 - 25044 1372 274 aa, chain + ## HITS:1 COG:lin1582 KEGG:ns NR:ns ## COG: lin1582 COG1792 # Protein_GI_number: 16800650 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Listeria innocua # 13 271 22 276 295 158 40.0 1e-38 MLAAFGTVAVLAALLGSTVMLRNNLSAPLLIQRLGNDIVSVGSRIVSVPVSWFTDGIDSV KDLQNAADENSHLKNKVAELAQVEARNAALEKENKQLKAAAGIKKTLTGYTTTTASVISR SSDSWSEVLTIDKGKSSGLKKDMAVMSGGGVIGRILEVDAATSKVELITTTDSSANRFAV QATTDTGKVLHGIISVQSNGTLTFTQASSSSKLKKGTKVYTSGLGGTSPKGLLIGTVAET TKDSFGLSDLIKIKPAGNLSDASVVTVVKRSVAG >gi|300497658|gb|AEAT01000016.1| GENE 27 25044 - 25583 957 179 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0667 NR:ns ## KEGG: LDBND_0667 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 179 1 179 179 293 99.0 2e-78 MRIFKQWVLAIALYLALVMEGTLSVYLQPALTYQHGRAGLLLLPIAVLIIAYEDERNEKE IWLALAAGVVADLYFWGIIGIYTFILPALSAFGRWYARVFPELFVFRLLGNIVAITVSCL YTWLVFRLIGWTDLTLKAIGFSLLYTAGWTTGISLATYWLWAKLARSYPFLVDLDNYRY >gi|300497658|gb|AEAT01000016.1| GENE 28 25880 - 26209 358 109 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0669 NR:ns ## KEGG: LDBND_0669 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 109 1 109 109 157 100.0 1e-37 MLMIFLLPAFGLACAYLVNLIWPKAAFKGYDVMPFFLIYACQLMTNLKGVPSFLPAGFLL YFILILLAAIRWAMINKNISLGKMFRQFWSYLDACSFFWYCGLLLVVMI >gi|300497658|gb|AEAT01000016.1| GENE 29 26341 - 26772 660 143 aa, chain + ## HITS:1 COG:BS_yllB KEGG:ns NR:ns ## COG: BS_yllB COG2001 # Protein_GI_number: 16078577 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 138 1 138 143 187 60.0 5e-48 MFMGEYQHNLDAKGRLIIPAKLREQIGPAMVLTRGMEGCIFGYPLTEWAKIEAKLAKLPL TKKNARSFTRMFYSGAMEGEFDKQGRINLSPTLKKHAGLVKECVIVGVSNRIEIWAKERW EEYSDEANESYDEIAEDLDDIEL >gi|300497658|gb|AEAT01000016.1| GENE 30 26775 - 27719 1181 314 aa, chain + ## HITS:1 COG:SA1022 KEGG:ns NR:ns ## COG: SA1022 COG0275 # Protein_GI_number: 15926762 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Staphylococcus aureus N315 # 3 314 2 310 311 342 57.0 7e-94 MEFKHTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLSKLDKGNLIGFDQDQYAIDT AQSNFAAFLKEDSQPRLQLVHNNFSHLKEELAKLRISGIDGIYYDLGVSSPQLDQAERGF SYRFDARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRAKP IETTFELVEIIKEAIPAAARRSGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGG RISVITFQSLEDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKPITASEEELAEN NRSHSAKLRVAEKL >gi|300497658|gb|AEAT01000016.1| GENE 31 27731 - 28087 476 118 aa, chain + ## HITS:1 COG:no KEGG:Ldb0737 NR:ns ## KEGG: Ldb0737 # Name: ftsL # Def: cell division protein FtsL # Organism: L.delbrueckii # Pathway: not_defined # 1 118 1 118 118 162 98.0 6e-39 MAGNTVRKYNYEPEEEARKSPRLVVDPQKVPYSAFEKLLAVLGLLGAVALITLNVSASVS ATYAQRQLTNVKESITKQKNATADLQQEIGELSSNTRLNKIAQSQGLKLRENNIRTIR >gi|300497658|gb|AEAT01000016.1| GENE 32 28087 - 30249 3256 720 aa, chain + ## HITS:1 COG:lin2145 KEGG:ns NR:ns ## COG: lin2145 COG0768 # Protein_GI_number: 16801211 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 24 718 14 713 752 451 38.0 1e-126 MKKTTNLRKIKSRAHGYRFTVGRILELVVALVFLFFAGRMLYLSISKTIDGQDISKRTAA IYRRNTVLTANRGTIYDKNGLIIAQDSHTYTVYAILDKTYVDSNKKPLYVQDKEKTADKL ATVLPLSKAKILKYLNPKNKNTFQVQFGTAGSGLTLTEKKKIQAMHLTGIKFMETPSRLY PNGVFASNVVGYTVSQTNSKTQTTELEGVTGLEAYFNKILKGTNGYETSMVDSSENQLPS GSHSYKAAKDGDNLYLTIDSQLQSALETYMSKVQKNYKPKAMTAVIEDLKTGKILAASQR PTFNSQTKAGISKAGSNLLVQSIYEPGSVFKILSLAAAVNSGNYNPKSYYRSGSITVSGS TIYDWQKSGWGTIPFSQAFPRSSNVGMVYLEKKIGAKLWRKYLNMFRITHKTGITLPGEV SGSLSFSSSVDQAVTSFGQGVTVNVMQMMQVYSALANNGQMVKPQLVEKITDSSGKTIKS YKVQKVGKKIFTAQTRKVVMQNMKKVLDKEIGTGHIYYMKGKDFGIKTGTAQIAKSTGGY MTGDRDYVFSVVGITPTNNPRYCIYLTMKQPSKLGSGAETILAQIFKPMMSRLVLLNKGD KSASAVVKVPKFTGMTYAKAKKTATSNGLSLVRLGTGSKVLSQKAGAGETVSVGSTVFAL TSGKISLPDLTGWSESQIEAYASLAGIKLQLSGSGKVKSQSLAQGTVVKSGTKLKVELKE >gi|300497658|gb|AEAT01000016.1| GENE 33 30257 - 31219 1388 320 aa, chain + ## HITS:1 COG:lin2143 KEGG:ns NR:ns ## COG: lin2143 COG0472 # Protein_GI_number: 16801209 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Listeria innocua # 8 318 10 321 324 266 49.0 4e-71 MQASLIAFMISLVLSALLLPWLIIWMRSHDEGQQIRDEGPKWHEKKSGTPTMGGTVFVLS AAVATVAICAYKGQLSKTVWILLVALLGYGIIGFLDDGLKLFFKRNLGLRAWQKMALQLL VAAAGIVLLAASDNFDFALYLPFAGVVKNVALFTLFEVFWLVGFSNAVNLSDGLDGLATG LSFIAYGTYAWLAFKSQNFGVLVFCMAVMGGLAAFFMFNHKPAKIFMGDAGSLALGGGLA AVSIFLGRPWSLLLVGIVFVCETASVILQVASFKTTGKRIFKMTPIHHHFEMLGWSEWKV DLVFWLVGLVGSGIYLMIWG >gi|300497658|gb|AEAT01000016.1| GENE 34 31226 - 32608 2095 460 aa, chain + ## HITS:1 COG:BH2567 KEGG:ns NR:ns ## COG: BH2567 COG0771 # Protein_GI_number: 15615130 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Bacillus halodurans # 1 459 1 450 450 369 45.0 1e-102 MKEIDKYAGKNILVLGLGRSGFAVSKLLLKLGARLTLNDKADLAADPKAKQLADLGVRVI GGSHPVDLFDQEKFDYLVKNPGIPYENPMVAKASEKGVPIITEPEVALSASESPYVCVTG SNGKTTTVMLTQQIMDHYLQKQGHHAYAVGNIGWPISEVVLNQAGPDDLLVVEMSSFQLM GVTDIEPKVAAIVDIYNNVHLDYHKTFDNYVDAKLNVGRFQKASDYFLANFDQKDILTRE EKATKAKILTFSENDPAADFYIGQDYLMHGEEKMMKIADIKLPGIHNLQNSLVAIGISSL MGAGKDDIAAVLSTFTGAEHRLQYVTTLDGVKVYNDSKSTNIEAATVAIQSFKQPEVLLA GGLDRGFLFDSLVDLFKKHVKAIVTYGETRYLLADAARKAGIKTIVVVDNLHEGVKAASK LAEAGDVLLFSPACASWDQFKTFEERGEYFVKYVKELEEK >gi|300497658|gb|AEAT01000016.1| GENE 35 32610 - 33722 1669 370 aa, chain + ## HITS:1 COG:BH2565 KEGG:ns NR:ns ## COG: BH2565 COG0707 # Protein_GI_number: 15615128 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus halodurans # 1 368 1 363 363 344 47.0 2e-94 MRVIFSGGGTGGHIYPIMALIERLKEEGICQDDEILFVGTKKGLESKIVPAAGVNFKTID IQGFDRKHLLNNVKTIQLFLKATKRAKEILADFQPDVVLGTGGYVSGAIVYEASKMKIPT MIHESNSVVGVANKFLGHYVDKICYTFDDAAKEFPEKKKLVKTGNPRSQQVLSLNAKPVD LAGDLGLNPQIPTVLVFGGSRGALAINRVMLKSLMELKKKPYQVIWATGTYYYDAIEKKL ADVDYGDSIKVVPYIANMPGLLPEMTCVVSRSGATSLAEFTALGVPVILIPSPNVTHNHQ MKNAMDLEKAGAALVIAEDDLNENTFVSSIDHLLLDHSYAEKMRQASKALGVPDASDQVI KVMKEIAKKN >gi|300497658|gb|AEAT01000016.1| GENE 36 33746 - 34591 993 281 aa, chain + ## HITS:1 COG:L0209 KEGG:ns NR:ns ## COG: L0209 COG1589 # Protein_GI_number: 15673570 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Lactococcus lactis # 47 269 127 349 392 71 24.0 1e-12 MARKRITRRDPEEELSKFLRHEPGRGQETRKLSSQLTSLKKERRRGLLTRLGSIMAVCLL AIAFLTYYVSPLADVSTVRVLGADDLDGKSMVEVAQIKASDKVVDALRGQKKISKKLAAK YPEVASVTLSVKGLNTLNMQVHERKVIGYIKDGFSYRKILANGELGTKSLAWSEVDHDKP LFIGYSKQVALKTNLKIFNSFPEYFKKQIKMLSGNTRRKTQMILVMKDGNVIIGNTETIK SKVKYYNSIKQDLTTNSVIDMEVGAFTRPLTSAEKNAYGLS >gi|300497658|gb|AEAT01000016.1| GENE 37 34572 - 36032 1611 486 aa, chain + ## HITS:1 COG:SP1667 KEGG:ns NR:ns ## COG: SP1667 COG0849 # Protein_GI_number: 15901502 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Streptococcus pneumoniae TIGR4 # 32 436 6 408 457 271 36.0 2e-72 MLTACLNFVSLKNYDIIYILELGEGNLDNSTLLVGLDIGTTSIKVVVADAAHQELQVYGA VAAPTRGMRHGKIVDIDQVAESVKNAIQQVSEKTNSKINRVVTALPVSMLQLESTTGLVN ISDSGKEVANEDVQRVMYAAIKAAKKKDRQAVAFFPSRFLIDGEKDVDDPRTMIARSLLV QGLVMTAPSAEIHNINTVLKHADIQNNFFVPAPMAVSSVALDEAERTFGAILLDMGGGST TATVIRDGQIKYATVDLKGAADITHDISVVLSTTMSDAEALKRDYGYADPDLASENEKFA VKAVGKDENNLVSEKYLSEIINARLQQILRRVGRGLYNHDALSLPAGVIITGGSALLAGI DDLVAADYDVKAKIYQSAQIGLRNPVYSVAYGIVNYANNLNDIGYLANTVIYQDSALASN ERPASAGNSQKNAKRVTRKAENDTELAYNKTKLDGEVDTETRHEEKTNNNENKNKGLAAF LRKFFD >gi|300497658|gb|AEAT01000016.1| GENE 38 36048 - 37406 1989 452 aa, chain + ## HITS:1 COG:BH2558 KEGG:ns NR:ns ## COG: BH2558 COG0206 # Protein_GI_number: 15615121 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Bacillus halodurans # 7 329 4 326 382 364 69.0 1e-100 MALDFTFDSDDNNNAVIKVIGVGGAGGNAVNRMIEDGVQGVSFIAANTDVQALNSNNAEV KIQLGPKLTRGLGAGSHPETGQKAAEESEETIEDALKGADMIFITAGMGGGTGTGAAPVI AKIARETGALTVGVVTRPFSFEGPKRSKNAAEGIAKLKEYVDTLVIVANNRLLEIVDKKT PMMEAFKEADNVLKQGVQGISDLITSTDYVNLDFADVKTVMENQGAALMGIGRASGENRT VEATKMAISSPLLEVSIDGAKQVLLNITGGPDLTLFEAQDASEIVSTAAGEDVNIIFGTA INPNLGDEVVVTVIATGIDDEAEAAASKQLPGRGHQVSAPREKPAAPKILTPEEAAPAAP VQEAPVQAEAAKPTSPVKEEKPAMIDPISVWGLNDDDYSRRQNPEEQKRQAEEKEAASDA DPSSAISQIDINTDYDDDDDDDIPFFKHRRDR >gi|300497658|gb|AEAT01000016.1| GENE 39 37421 - 37867 695 148 aa, chain + ## HITS:1 COG:BS_ylmF KEGG:ns NR:ns ## COG: BS_ylmF COG1799 # Protein_GI_number: 16078603 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 145 1 145 149 101 38.0 4e-22 MNNKFKDFFGFGDNDSYEERDAYEEHYDEQEEMQNSNRPTNSRDSNVVSIKAGQAGSGPS KIVLYEPRVYSDAKEVAQNLLNQKAIIINFSRMDDASARRVVDFITGTVYALNGEIQRVG DKIFLATPPKFETDGKITELLDKKDTLG >gi|300497658|gb|AEAT01000016.1| GENE 40 37867 - 38169 526 100 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0681 NR:ns ## KEGG: LDBND_0681 # Name: not_defined # Def: cell division membrane protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 100 1 100 100 153 98.0 3e-36 MQTFLAFLYRLLYFICEAYSLLIIIDAFMSWIPAISESAAGRWIDRIVNPFVNLFRQGPI LRLIYATGIDISPMIALFVIYFVQSVALGWLFSILGRIFL >gi|300497658|gb|AEAT01000016.1| GENE 41 38169 - 38966 732 265 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58337123|ref|YP_193708.1| cell-division protein [Lactobacillus acidophilus NCFM] # 1 264 1 264 266 286 51 2e-76 MDKRQASSFYPHFAIEERPTIDQFVGLFNRLLFTGQAFLTDFLDPRQRQIMETIAGGEAI VQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFEIEYPQKFASLRHSQILGSLANSGVK TDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMGPVKVRLEEKPLKDRLEAEDNSEIIT AVASSMRLDAVLAALSNKPRSQVKEALEAGEVRLNWHEEEKGESLLKVGDILSLRRFGRV KLLSVQPSKKGRLRVEGQFWPAKRQ >gi|300497658|gb|AEAT01000016.1| GENE 42 39287 - 42082 4357 931 aa, chain + ## HITS:1 COG:L0350 KEGG:ns NR:ns ## COG: L0350 COG0060 # Protein_GI_number: 15673845 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Lactococcus lactis # 1 931 1 932 932 1130 59.0 0 MRVKDTLNLGKTKFPMRGNLPKREAEWEKNWEDQKFYESRLKLNEGHERFDLHDGPPFAN GNIHMGHALNKITKDIIVRSKNMEGYYAPYVPGWDTHGLPIEQQLTKQGVDRKTMDRAAY RELCRKFAMEQVEKQRTDFKRLGVMGDWDHPYITLLPEFEAAEIRVFGKMYENGYIYQGK KPVYWSWSSESTLAEAEVEYHDVESPSIYISFPVKDGKGKLSEENTYFLIWTTTPWTIPS NQGIAVNPKFDYSVVEVGDRRYVVGTDRLSAVAEILGWDSYKTVQHLKGTDMEYMVAKHP YIEGRDSLLMEAVYVTDDDGTGLVHTASGFGEDDYNTAMRYGFDVLSPMDNKGCFTEEIP DPDLVGKFYTDTNEIVKDKLAAAGNLLHYSTFVHSAAHDWRTKKPVVYRATTQWFASISK FRDQILDQIEKTTFYPAWGKTRLYNMIKDRGDWVISRQRAWGVPLPIFYAEDGTAIVTHE TIEHVADLFAKEGSNAWFTHPVEELLPEGFTSEHSPNGKFTKETDILDVWFDSGSSWSGV QALGRDVHYPTSMYLEGSDQYRGWFNSSLITSVATNGVAPYKSVLSQGFTLDGQGRKMSK SLGNTIAPNDVIKQMGAEIIRLWVASVDASGDVGVSMDILRQVSEGYRKIRNTFRYMLAN TADFDPEKDRVAYKDLRKIDQYLEVKLNDLVAESIVNYDKYDFADVYKLVFKFITNDLSA FYLDFAKDVLYIEGKDSHARRSMQTVIYDAAVKLAKILAPILPHTMGEVWGYLKEKEEDV YLSNFPEIEDYADADDLKESWGEFMKLRDDVLKALEEARDQKLIGKSFEASVTVYPGEAA KAALDKLAGEDFREILIVSNLVMGQGEVPAEAKHFDQASVLVRRAEGEVCPRCRMYRTDL GADSRLPQLCGRCASIVAGDHPEILEEGLED >gi|300497658|gb|AEAT01000016.1| GENE 43 42082 - 42291 91 69 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0684 NR:ns ## KEGG: LDBND_0684 # Name: not_defined # Def: cold-shock DNA-binding protein family # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 69 1 69 69 124 100.0 1e-27 MRTGLVKQFAEKASFGFIEDDQNHKLYFVFYTAIKEEGYKRLEVGQRVRYQLAQGKHGLQ CINVYLAKD >gi|300497658|gb|AEAT01000016.1| GENE 44 42307 - 42864 524 185 aa, chain + ## HITS:1 COG:BS_yqkG KEGG:ns NR:ns ## COG: BS_yqkG COG0494 # Protein_GI_number: 16079418 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Bacillus subtilis # 3 172 4 172 185 122 41.0 3e-28 MDLKETEISTKEAFHGGFINLHVETVMLPNGKTASRELVDHRPAAAAICINDEKKMLLVT QWREAIKQLTLEIPAGMIDASDVSPLDAMKRELNEEDGLKAEYWEKVAEFYTSPGFSNEK LHLFYCDTLSPVANKLDLDEDEFLTAEWYSLEELKNLLTEGKIVDAKTIYAISVWENMLL TGSEG >gi|300497658|gb|AEAT01000016.1| GENE 45 42868 - 43086 87 72 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0686 NR:ns ## KEGG: LDBND_0686 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 72 1 72 72 109 100.0 3e-23 MTEKRSDYRRRQAEQAEKANRQEAADSAAFPAFKQDQDQKTLKAERLKKRLNFAILVVCL LIILVWVILLKF >gi|300497658|gb|AEAT01000016.1| GENE 46 43106 - 43804 846 232 aa, chain + ## HITS:1 COG:HI1216 KEGG:ns NR:ns ## COG: HI1216 COG0775 # Protein_GI_number: 16273135 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Haemophilus influenzae # 1 224 1 223 229 145 40.0 8e-35 MKIAIVVPMAEEAEFYHQYFSSGKKEMFGSTEFEHFSVAGNDLYLGLTGIGKVQAAMNLT SLLAKEKIDLVIMTGSAGSLQKEVQRMDLVLPSEFAYHDAHNTSAGNYVEGQIPQEPARF KLDCAERDKFKDFLGKKGVAYKEGLVVTGDSFISSQAQKDKILGNFPTALCVEMEGAAFA QVAYHFNVPLIALRAISDNGDEDADNDFAAFVRKVGAQAAELIVEYLRENDF >gi|300497658|gb|AEAT01000016.1| GENE 47 43804 - 44967 1538 387 aa, chain + ## HITS:1 COG:lin1548 KEGG:ns NR:ns ## COG: lin1548 COG1104 # Protein_GI_number: 16800616 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Listeria innocua # 3 380 4 379 382 353 47.0 2e-97 MKQVYLDNAATTPMSPTVIDVITDEMANDFGNASSTHTLGRKARNSVETARHTIAQAINA KDQEIIFTSGGSESNNTVIFGVAEMQKAVGRHLITTKIEHESVLKSMQRLEELGYEVTYL DVDRDGHISLDQLREAIRPDTILVSVMAVNNEVGSINPLKDIGQIVKDSQAFFHVDAVQG LGNIDLDVEEMGIDFMSTSAHKINGPKFLGFLYERDGIRLPNRIYGGDQELKRRAGTENV PGIAGFGQAVAEVQAESKADLQAKYTDFQKIILSRLDESGVAYEVNSPLTGLVSHHVLNL RLNGLSTYVLLANLDLAGFAVSGGSACTAGSLTPSHVLTAMFGQDSPKVSESIRISFGRY NTVEEVKAFAAALVKVARKLQDRKRED >gi|300497658|gb|AEAT01000016.1| GENE 48 45022 - 45363 640 113 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0689 NR:ns ## KEGG: LDBND_0689 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 113 1 113 113 201 99.0 1e-50 MANTVMINGDKRKFMLNPDVKLYALIDAGFQKTPRGNFVYEHPLYNESPYNATTKLKMTI KSDLTSLTMVVTDPSGLKKVNIFKNKQLAPTVELLDYILKDLEERKILSEVKD >gi|300497658|gb|AEAT01000016.1| GENE 49 45368 - 46495 1687 375 aa, chain + ## HITS:1 COG:SP0118 KEGG:ns NR:ns ## COG: SP0118 COG0482 # Protein_GI_number: 15900060 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Streptococcus pneumoniae TIGR4 # 1 375 1 373 373 486 64.0 1e-137 MVDNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTNDDGVCTATEDYEDVK KVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLEYALDLD ADYLAMGHYAKTMVDENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLTKPEVR RIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLPAQGGDMVTPDGKVVGQHAGLMYYT IGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGMTFFTGNPE EDTEFKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVLYNGEECLGGG NIDAAFKDDKKLQLV >gi|300497658|gb|AEAT01000016.1| GENE 50 46595 - 47254 769 219 aa, chain + ## HITS:1 COG:SP0984 KEGG:ns NR:ns ## COG: SP0984 COG0406 # Protein_GI_number: 15900859 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 207 1 203 206 137 37.0 1e-32 MEIYFVRHGKTQWNLEQRFQGGQGDSKLLPESLADIEKLGRYLQGKHFKAVYASPLDRAR MTAQGLIGAAGIRLPLHIDERLREMNLGKLEGMKYVEAEKLYPQEIDNFWHHPDKYDNTV VEGESYEHAMARGLDFGREMAKKYPKDSDKVLVVSHGAVLSAIMGALLGYDLANLRQNGV IYNTSVSVLASQEKGPAFKLVKWSDVTPLEHKMSETDGL >gi|300497658|gb|AEAT01000016.1| GENE 51 47254 - 47907 913 217 aa, chain + ## HITS:1 COG:no KEGG:LBUL_0690 NR:ns ## KEGG: LBUL_0690 # Name: not_defined # Def: TPR repeat-containing protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 217 1 217 217 357 99.0 2e-97 MDQKINQLYEEGKVDQAIHALIEKIGHNPRETANYLQLATYLLDQGSAEQARELLTKARG IAEDPQALVYDLAVCDYALGDFDQALARLAQIPDDDMNMYQKALVYLKLGQSQKALAYAL SIKESDDRVKELIGDIWLALGELEAARASYLEIAEGQRSSKLNFLLGLTYFSQDREQAEE FFAKSKKQDPKYYQKAKDQYESLLKLLSQGKAGAGKE >gi|300497658|gb|AEAT01000016.1| GENE 52 47921 - 50311 3145 796 aa, chain + ## HITS:1 COG:BS_yrrC KEGG:ns NR:ns ## COG: BS_yrrC COG0507 # Protein_GI_number: 16079801 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Bacillus subtilis # 4 722 16 751 798 477 39.0 1e-134 MTEFSGEVKSVIYENAQNMYKILLVAVSQPLAGYDDDEIKVTGTFGDLELGQEYNFTGDL VTHPKYGLQFQATGCQPALPKETGGVVKYLSSEKFPGIGPKTAEKIVDQLGSGGLKSLQA DPALIAKLDLSQKQKDSLLSGLAQMDSFDDLAMTLASYGIPRKVAGRLYQKYHDQTLKKL QADPYLPLGEVTGYSFKQADHLGISFGIALDSLERADGSILAVLLQALTMEGETYLELEE LLPAAKELTNINFDRLAEAVNDLQDKKKVVVGKGRASLLAPFQVESEIVTDLEDLLAKGK EADYREKDLDQAIKRAERKLGISYDPEQKQAIKNAVTSPVSILTGGPGSGKTTIIDGILL VLKDLVDMDEEEAEEAILLAAPTGRAAKRMGEVTGYPAKTIHRLLGLGIDNSEEMELNDL EGEILIVDEMSMVDIYLFEKLLSAISNVHHLVFVGDKDQLPSVGAGKVFADLIEADFIPT CQLQVVHRQKDDSTIIPLAHAVNEGANPAVLLQKTASYSFIPCRPHAVPSAVEQITQAAL KSGFAADDIQVLGAMYRGDGGINSLNDTLQRVINPEKGNDKAVEAHGENFRLHDRVLQLQ NDPERGIYNGEIGKVVAVDPEMMEDEDDEVKLLVNFDGKEVAYTQADLNNLTRAYAITIH KSQGSEFPLVILCLTMQNYIMLKRNLLYTAITRASQKLVMVGEEQAFAQAMRVKGNERRT NLVWLLKDRFKPEEQSKQESSDSTENTLDKGEKAEDYILTGARISRSEISPMVGMEDLVQ GCKKLAEIVRTKGPGA >gi|300497658|gb|AEAT01000016.1| GENE 53 50480 - 51829 479 449 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 13 442 7 443 458 189 29 4e-47 MTEKETKKTVKNIIIGFGKGGKTLAKFLGQQGEEVLLVEKSAKMYGGTCINIACLPSKRL ILEGAAGSDFSEAVAGKNEMTAQLREKNYQMLAQEETVTVLDGQARFIGEKEIEVTGPAG KQIFKSDRIFINTGASPVLPPVPGLKESKKRLDSTQAMDLTSLPKELLILGAGYIGLEFA GMFANYGSQVTVLDHSPEFLPREDDDIKAAVKADLERAGVKFILGADVEKVSDEADQVVI DYKLGEEKLTAAADKVLVAAGRRANTADLNLPAAGIETDDRGNIKVDDRLRTSADQVWAL GDVKGGPQFTYVSLDDFRIVKDQLFGEDKRRVSDRQILPTSVFITPPLSAVGLNEKAAQK AGLDYQLFKLPVAAIPKAKVAKDSRGLFKALVDPASGQILGASLYGLESHELINQIALAM KAKLPYSFLRDQIYTHPTMSEAFNDLFKQ >gi|300497658|gb|AEAT01000016.1| GENE 54 51869 - 53482 2570 537 aa, chain - ## HITS:1 COG:lin1026 KEGG:ns NR:ns ## COG: lin1026 COG0595 # Protein_GI_number: 16800095 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Listeria innocua # 2 535 25 554 555 659 58.0 0 MYCVQYQDEIVIMDCGIKFPEDDLLGINYVISDYSYLVKNREKIKALVVSHGHEDHIGGI PFLLEKIPEIPVYATPFALALIKSKCEEHGILDRTELHEEHEDTVLTFDKLKVTFFRTTH SIPDTLGIAVHTPLGAVVFTGDFKFDLTPVMNQPAPNFQRMAQLGEEGVLALLSDSTNAE VPQFTKSERFVAGSLHNIITGIEGRIIFATFASNLYRVSTAIQAAIDTGRKVAIFGRSME NGIQNGIDLGYLNVPEGLIVDAEAINSLPPEKVMLLCTGSQGEPLAALSRIANGTHRQIK LKPHDTVIFSSNPIPGNTLSVNQLINKLMEGGAKVVHGRVNNVHTSGHGGQEELKLMVEL TKPKYMIPVHGEYRMQVVHAHLAQQAGVPAENTFVLKNGEVVCFSPEGARIAGDIHVKDV FVDTSGAADVGNIVVRDRQILSEEGLVVAVATVDYKHKQVLAGPDILSRGFVYMRESQDL INAAQKHVYHVLKTEMAKSDKPKDSEIRKAIIENLQDFLYSRTERRPMILPMLVEKK >gi|300497658|gb|AEAT01000016.1| GENE 55 53538 - 53771 389 77 aa, chain - ## HITS:1 COG:L91273 KEGG:ns NR:ns ## COG: L91273 COG5503 # Protein_GI_number: 15672273 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Lactococcus lactis # 1 70 1 76 76 62 44.0 3e-10 MIYKVLYQKDKIVNPRRETTQTLYMEADNVVQARALVEQNTPYNIELIQELTGNSLKYEQ EHADFKLTAFGQTNSED >gi|300497658|gb|AEAT01000016.1| GENE 56 53950 - 54573 886 207 aa, chain - ## HITS:1 COG:lin1043 KEGG:ns NR:ns ## COG: lin1043 COG0242 # Protein_GI_number: 16800112 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Listeria innocua # 24 205 1 181 183 182 51.0 3e-46 MFNHSRPFCGKNILAIILKGEPTLILMKDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDM MEYLVNSQDPKIAAKHQLRAGVGLAAPQVGEGVSMAALLVPDDKGEIIFKEVYVNPEIIS ESVRKTCLGEGEGCLSVDKVIDGYVPRPNKVTVHYWTVDGEEKTIRLKGYPAIVSGHEID HLNGHLFYDRINKENPFALDEDTIVIY >gi|300497658|gb|AEAT01000016.1| GENE 57 54728 - 56599 2428 623 aa, chain + ## HITS:1 COG:SP0681 KEGG:ns NR:ns ## COG: SP0681 COG1217 # Protein_GI_number: 15900582 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Streptococcus pneumoniae TIGR4 # 13 619 3 609 613 848 69.0 0 MRNGEETFLADQKRRENIRNIAIIAHVDHGKTTLVNQLLKQSDTLPEHMNLEDRAMDSNA IERERGITILSKNTAVSYKGTTINILDTPGHADFGGEVERIMHMVDGVLLLVDAYEGPMP QTRFVLQKALEAGVKPVVVVNKIDRPGSRPAEVLDEVLELFIELGANDEQLEFPVVYASA LNGTSSYSDDPADQEETMDPVFDTVIKAIPAPLDNEDEPLQFQITMLDWDDYVGRIGVGR VYRGKIKVGDEVTVMKLDDSKQNFRVTKLFGYFGLKRNEIKEAKAGDIIAISGINDIFVG ETIASKENPEALPILRIDPPTLQMDFVANDSPFAGREGSQVTPAKLEERLLRQTRTDVSL KVEPTDQLNAWTVSGRGELHLSILVEEMRREGFELQLSRPKVIYREVDGQMCEPYEAVQV DVPDEYVGSVIDGLSQRKGEMQNMVSKGNGQTRLEFSVPSRGLIGYNNEFMSATGGYGIM NHTFSEYKPVVKNWNPGRRNGALVSINQGQSTTYSLQSVEQRGQLFIGAGVQVYEGMIVG VSSRDRDIAVNVTKGKNLTNTRASGKDHAAAIRTPKTLTLEESIEFLNDDEYCEVTPESL RLRKKILNTSERQKFDKKKAKTN >gi|300497658|gb|AEAT01000016.1| GENE 58 56698 - 57900 1455 400 aa, chain + ## HITS:1 COG:SPy0609 KEGG:ns NR:ns ## COG: SPy0609 COG0772 # Protein_GI_number: 15674690 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pyogenes M1 GAS # 20 399 19 413 434 238 38.0 2e-62 MKKNKVAATAAKIKATFQYFDYRIFIVYLLLMTIGVIAVYSASSEILLIHGFKATVYGQK QLLYAFFGVLICLACYSINLDYLRRGKLLLWLLVIVAGLLVYVRLFGQAVNGAKGWINLG PINIQPLELAKLVLTLYLARMLAKADGRLVRGHIISQLLPTAIIAGLLMILVLIEPDFGG TAILFCLVLIMYSVSGIPTGYILLSIIGITVLVVGGFSLIVAWNPSFLQDVYVYKRFIAF LHPFKTATNEGAQLVNSYYAIHNGGLFGLGLGNSIQKRGYLPEPYTDFILSIIAEEVGSL GALVVLGLLFYLMILIMERGVKAQSQYSTLICFGVTAIIFFQTLFNVGAVLGLMPITGVT LPFISYGGSSLWVLSAAIGLVLNVTAEEKIRQEVQAEDEY >gi|300497658|gb|AEAT01000016.1| GENE 59 57890 - 58231 490 113 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0701 NR:ns ## KEGG: LDBND_0701 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 113 1 113 113 174 99.0 1e-42 MSINQELADQEIASRTSLIVYLRNVNNDQFKLRRFGDIVYFSKKLHYLILYVNQAEAEET ASKLRTFSFVKEVEFSQNDALDLDNQKIEQQISDMAKEAEEKLNQTDKEDWIK >gi|300497658|gb|AEAT01000016.1| GENE 60 58228 - 58779 366 183 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 180 13 193 199 145 44 6e-34 MRIISGKYAKRNLFTLKSQKTRPTSDKVKESLFNSLGQFFAGGEVLDLYAGSGALGIEAV SRGCEHAVLNDVSRQACQIIRKNVDLTKEPDRFEVFTMPAKVALKVFADQERKFDLVFLD PPYAKQQMVKDMTALASLDLLKPGAKIVVETDEQTDLPPVAGFDLLKDHHMGKTIVRIYQ RAE >gi|300497658|gb|AEAT01000016.1| GENE 61 58780 - 59274 305 164 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 3 159 5 158 164 122 43 7e-27 MTTALFPGSFDPITNGHMDTIEQAAKVFDRLLVVVMTNSSKKALFTPDERVDLIKDAVKE HGLANVEVLARPGQLTVDLAKELGAGVLVRGVRNSSDFLYEQQIAQLNRDLAPDLPTVLF MAEAANSALASSMLKEIAMFGGELDRFLPKKAARALKEKLQSES >gi|300497658|gb|AEAT01000016.1| GENE 62 59264 - 60304 416 346 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 [Bacillus selenitireducens MLS10] # 6 341 2 343 350 164 32 9e-40 MKVKKDGQSKKWRRALVGLFAVILLALVLLLPTKYVIEAPGDALLVGNYLKTTGVKAKNN LYFVTVSERRAVLGDYLWSFTQPYEDRLTMDEVTGGSSTEQYEQLQEWYMQTSQQTAIYY AAKKAGLKPKLKYQGVYVMDLQSSSSFKKKLLIGDTIVAANGHKFKSVQGFMSYLQKQKI GQKVSITVLRSGKKQTFTGKIVKVKGTGKPGIGISMVERVKVEVSPKTTISTGDIGGPSA GLMFSLACYQNYTGKDLTKGHKVAGTGTIDANGKVGIIGGVDKKVVAADKEGAEVFFAPT DQTGVKKSQTNYAVAKRTAKKLGTKMKIVPVATFDDALKYLQKHYK >gi|300497658|gb|AEAT01000016.1| GENE 63 60434 - 61186 922 250 aa, chain + ## HITS:1 COG:L0316 KEGG:ns NR:ns ## COG: L0316 COG1555 # Protein_GI_number: 15673755 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Lactococcus lactis # 25 248 13 212 215 111 36.0 1e-24 MTQSNERTEGKQKLQDLLAWLMDKKMYIIVVLLAAGGFYYANRQPAADNSALLSSSQSMS ENSGQSLQSSSVSSVAASASSAASAANAEVVCDISGAVKHQGVYRLKNGARLEDLIEKAG GLTKDAQLQAINRSQLLKDQDKIYIPGKGDKTEAAQTANSAAASPPAPSASASASSVSSS TSGAASGDLINLNTATASDLQKLNGIGEKKAEQIIAYRQEKGSFKSIDELKEVSGIGDKT FAAIKDQLTI >gi|300497658|gb|AEAT01000016.1| GENE 64 61140 - 63398 2015 752 aa, chain + ## HITS:1 COG:SPy1408_2 KEGG:ns NR:ns ## COG: SPy1408_2 COG2333 # Protein_GI_number: 15675328 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Streptococcus pyogenes M1 GAS # 447 732 2 294 299 213 41.0 2e-54 MATRPSRQLRTSLQSSLQAGFYFLLALASVSLCGIFQSQKWGKLFALAALLYLLFLLKDK YGGLFKLALAFLLLLTLVLAKDQVKPGEPAGDIRLYPDQVKITDGWLSGRGQTATQKVQV YGPASREALALLENGQSIDLTEVGGAVSEIEPATNPGQFDYRRYLASQHVYRQVKLAHYQ VKLAPASLLTRLHGLRWKIQAYLKRLPRLLAFFASELLLAENPAGDNQANLNTYRDLGVI HILSISGMHVGIYVFALAVFGSYLHMTKEEVFAASCALLTFEVFLSAGQPGFIRATLSYV FSAGLAFKSRRIGRADLLGLTYCCQQLFTPRLLLETGGILTYVLALGLVLTAKLPDCKQA FWLNGLLTPFLLYFFYQVNVCTIFYNILVVPYFNYIVMPMTGLALLAPPSLAAFFEKILE AAEGMLANVAKTGFGQLIYGQVKAWQLALLFALTFLYLITRKKKYRHILAAVYLLIFVSI HFPLEGQVSFIDVGQGDSILLTTPIRRQVYLIDTGGKLTFGKKKQSQPQIDRITIPLLKA QGISQIDGVFVSHQDADHVGDLGPLLEEMPVKRLYMGAGLIQNPSFRARIAGRVEKTKLV ELKAGMEVKEAINFQVLHPEVAGKGENKDSLSLTCRLAGKSWAFTGDLDQAGEEAIIKKF PDLKIDYFKLGHHGSDTSSSTVFLRAIQPKLVFISAGRNNRYHHPKPETLAKLHQLGIPY LNTQTEGMISWHYGIREYFSSFLEGRRVCYHY >gi|300497658|gb|AEAT01000016.1| GENE 65 63429 - 64418 1195 329 aa, chain + ## HITS:1 COG:BS_yqeN KEGG:ns NR:ns ## COG: BS_yqeN COG1466 # Protein_GI_number: 16079610 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Bacillus subtilis # 50 314 53 321 347 104 29.0 2e-22 MPNLISLFPNSQAGNPNVLLQGPDAFLNDYLAHNYVQQAAFQGLEKVTVDCESDPLDDLI AALAEASLFSQQKLVLVKNPIFLTGKFPAKYKQQGDRLLEIFSHLDQIDDVIVLVASYEK LDRRKKLTKQVEKSFNTVSTAVKSYESGPVMQALVKAEGYRFAGGALDLLMERSDQVLDA ALGNYNKLKAISDGQEISRDLVDRNIDLSLDQNVFAILEAALRGDYQEAIDRLDGQLREG TYPLQLVAVFFSQVEFLLCVKVMGQRRRSESEIAKELSAHPYRVKTALKSRAKVGQLKKM LGQLIQLDYCYKSGVYQGSRFLKAFILTC Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:06:56 2011 Seq name: gi|300497596|gb|AEAT01000017.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00169, whole genome shotgun sequence Length of sequence - 69124 bp Number of predicted genes - 61, with homology - 60 Number of transcription units - 33, operones - 14 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 42 - 1184 1534 ## COG0381 UDP-N-acetylglucosamine 2-epimerase - Prom 1263 - 1322 2.8 + Prom 1142 - 1201 4.0 2 2 Tu 1 . + CDS 1286 - 1480 290 ## Ldb0552 hypothetical protein + Term 1517 - 1549 2.4 - Term 1492 - 1548 9.8 3 3 Tu 1 . - CDS 1566 - 3020 2034 ## COG0531 Amino acid transporters - Prom 3138 - 3197 6.3 + Prom 3134 - 3193 4.0 4 4 Op 1 . + CDS 3338 - 3574 63 ## 5 4 Op 2 . + CDS 3480 - 3722 182 ## LDBND_0491 hypothetical protein 6 4 Op 3 . + CDS 3762 - 5849 2409 ## COG1982 Arginine/lysine/ornithine decarboxylases - Term 5849 - 5883 4.0 7 5 Tu 1 . - CDS 5930 - 7180 2026 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance - Prom 7210 - 7269 7.7 - Term 7237 - 7285 6.8 8 6 Tu 1 . - CDS 7293 - 8576 1061 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 - Prom 8663 - 8722 3.9 - Term 8706 - 8744 7.5 9 7 Tu 1 . - CDS 8808 - 9299 517 ## COG3641 Predicted membrane protein, putative toxin regulator - Prom 9340 - 9399 10.5 - TRNA 9407 - 9481 69.9 # Arg CCT 0 0 - Term 9439 - 9478 -0.9 10 8 Op 1 . - CDS 9543 - 10853 1565 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 11 8 Op 2 . - CDS 10855 - 12099 1939 ## COG0513 Superfamily II DNA and RNA helicases 12 8 Op 3 . - CDS 12096 - 12782 816 ## Ldb0540 hypothetical protein - Prom 12845 - 12904 6.3 + Prom 12633 - 12692 5.6 13 9 Tu 1 . + CDS 12868 - 14181 1678 ## COG0531 Amino acid transporters + Term 14220 - 14255 1.3 - Term 14199 - 14248 7.1 14 10 Tu 1 . - CDS 14261 - 14833 902 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase - Prom 14871 - 14930 7.3 - Term 14891 - 14928 2.3 15 11 Tu 1 . - CDS 14942 - 16288 1850 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 16321 - 16380 3.4 - Term 16370 - 16423 9.2 16 12 Tu 1 . - CDS 16428 - 16793 519 ## COG3764 Sortase (surface protein transpeptidase) - Prom 16865 - 16924 3.8 - Term 16863 - 16897 3.1 17 13 Tu 1 . - CDS 16930 - 19332 3834 ## COG3957 Phosphoketolase - Prom 19367 - 19426 7.0 - Term 19480 - 19535 19.1 18 14 Op 1 . - CDS 19536 - 20258 926 ## COG2188 Transcriptional regulators 19 14 Op 2 . - CDS 20267 - 21202 1519 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 21226 - 21285 7.2 - Term 21250 - 21285 5.3 20 15 Op 1 . - CDS 21298 - 21990 1026 ## COG0120 Ribose 5-phosphate isomerase 21 15 Op 2 . - CDS 22003 - 22653 714 ## COG0036 Pentose-5-phosphate-3-epimerase 22 15 Op 3 . - CDS 22669 - 23589 1304 ## COG0524 Sugar kinases, ribokinase family 23 15 Op 4 . - CDS 23656 - 24153 666 ## Ldb0528 hypothetical protein 24 15 Op 5 . - CDS 24220 - 25140 979 ## LDBND_0468 hypothetical protein 25 15 Op 6 . - CDS 25137 - 26534 1793 ## COG4320 Uncharacterized protein conserved in bacteria 26 15 Op 7 11/0.000 - CDS 26543 - 28708 3076 ## COG0855 Polyphosphate kinase 27 15 Op 8 . - CDS 28712 - 30223 2104 ## COG0248 Exopolyphosphatase - Prom 30358 - 30417 5.4 - Term 30373 - 30413 3.0 28 16 Op 1 31/0.000 - CDS 30429 - 31274 1136 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 29 16 Op 2 17/0.000 - CDS 31316 - 31984 1058 ## COG0765 ABC-type amino acid transport system, permease component 30 16 Op 3 31/0.000 - CDS 31996 - 32637 955 ## COG0765 ABC-type amino acid transport system, permease component 31 16 Op 4 16/0.000 - CDS 32637 - 33476 1187 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 32 16 Op 5 . - CDS 33499 - 34239 306 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 34456 - 34515 8.2 33 17 Op 1 . + CDS 34783 - 35439 961 ## COG0572 Uridine kinase 34 17 Op 2 . + CDS 35439 - 36065 1105 ## COG0572 Uridine kinase + Term 36106 - 36143 7.1 35 18 Tu 1 . - CDS 36395 - 36964 1034 ## COG4721 Predicted membrane protein - Prom 37103 - 37162 1.7 36 19 Op 1 . - CDS 37168 - 38253 1625 ## COG1363 Cellulase M and related proteins 37 19 Op 2 . - CDS 38267 - 39688 2342 ## COG4690 Dipeptidase 38 19 Op 3 . - CDS 39766 - 40551 1213 ## COG0796 Glutamate racemase - Prom 40588 - 40647 5.5 + Prom 40681 - 40740 6.3 39 20 Tu 1 . + CDS 40840 - 41553 1146 ## COG0670 Integral membrane protein, interacts with FtsH + Term 41580 - 41617 2.1 + Prom 41588 - 41647 4.7 40 21 Tu 1 . + CDS 41694 - 42893 1405 ## COG0477 Permeases of the major facilitator superfamily + Term 42911 - 42947 4.0 + Prom 42993 - 43052 7.2 41 22 Op 1 . + CDS 43300 - 43503 234 ## LBUL_0448 hypothetical protein 42 22 Op 2 . + CDS 43530 - 43766 126 ## gi|300811390|ref|ZP_07091886.1| conserved hypothetical protein + Term 43789 - 43845 7.8 - Term 43790 - 43822 3.3 43 23 Tu 1 . - CDS 43846 - 45468 2336 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 45512 - 45571 5.3 + Prom 45563 - 45622 7.5 44 24 Op 1 . + CDS 45650 - 46594 1215 ## COG0679 Predicted permeases + Prom 46656 - 46715 4.9 45 24 Op 2 . + CDS 46763 - 49492 4519 ## COG2352 Phosphoenolpyruvate carboxylase + Term 49514 - 49571 12.5 - Term 49504 - 49556 8.1 46 25 Op 1 15/0.000 - CDS 49617 - 50762 1534 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases 47 25 Op 2 . - CDS 50765 - 51214 653 ## COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain 48 25 Op 3 4/0.000 - CDS 51228 - 53099 2818 ## COG2213 Phosphotransferase system, mannitol-specific IIBC component - Prom 53164 - 53223 7.8 - Term 53199 - 53246 4.2 49 25 Op 4 . - CDS 53262 - 55328 1651 ## COG3711 Transcriptional antiterminator - Prom 55354 - 55413 4.4 - Term 55405 - 55444 8.2 50 26 Tu 1 . - CDS 55465 - 57276 2958 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains - Prom 57413 - 57472 5.8 - Term 57443 - 57478 6.5 51 27 Tu 1 . - CDS 57485 - 57970 714 ## COG1522 Transcriptional regulators - Prom 58022 - 58081 5.5 52 28 Op 1 . - CDS 58096 - 58452 523 ## COG3759 Predicted membrane protein 53 28 Op 2 . - CDS 58542 - 59108 555 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 59131 - 59190 2.5 54 29 Tu 1 . - CDS 59211 - 60539 759 ## COG1403 Restriction endonuclease - Term 60828 - 60873 9.6 55 30 Op 1 . - CDS 60950 - 62131 1402 ## COG2200 FOG: EAL domain 56 30 Op 2 . - CDS 62150 - 62308 97 ## gi|300811368|ref|ZP_07091864.1| hypothetical protein HMPREF9264_1639 - Prom 62406 - 62465 6.5 - Term 62355 - 62393 3.7 57 31 Op 1 . - CDS 62534 - 63040 386 ## COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding 58 31 Op 2 . - CDS 63084 - 63755 672 ## COG4912 Predicted DNA alkylation repair enzyme - Prom 63866 - 63925 6.0 + Prom 63747 - 63806 6.5 59 32 Tu 1 . + CDS 63901 - 65241 1822 ## COG1114 Branched-chain amino acid permeases + Term 65250 - 65292 6.3 - Term 65298 - 65333 3.5 60 33 Op 1 1/0.000 - CDS 65429 - 67675 1550 ## COG2217 Cation transport ATPase - Prom 67779 - 67838 2.4 - Term 67823 - 67862 2.0 61 33 Op 2 . - CDS 67926 - 68354 108 ## COG3682 Predicted transcriptional regulator - Prom 68484 - 68543 5.7 Predicted protein(s) >gi|300497596|gb|AEAT01000017.1| GENE 1 42 - 1184 1534 380 aa, chain - ## HITS:1 COG:lin2681 KEGG:ns NR:ns ## COG: lin2681 COG0381 # Protein_GI_number: 16801742 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Listeria innocua # 1 379 1 377 379 476 62.0 1e-134 MQKIKVMTVFGTRPEAIKMAPLVLKLISDDRFQAVTVVTAQHREMLDQVLEIFKIQPDYD LNIMQPQQTLADITTRVLTALSQIIQEEKPDIVLVHGDTTTSFAASLAAFYQQTPLGHVE AGLRTWNKYSPFPEEMNRQLTDVLSDLYFAPTSVSRANLLKEGHPEENIFVTGNTAIDAL AQTVQSDYQHEVLDKIGQGKRIILVTMHRRENQGEPMRRVFKVMKDVVDQTDDVEIVYPV HLSPRVQEAAKEVLGGDPRIHLIKPLDVVDFHNLAKRSYFIMTDSGGVQEEAPSLGKPVL VLRDTTERPEGVKAGTVKLVGTEEDAVKAAMLELLTDPAAYQQMAEAKNPYGDGQASDRI LDDIAWCFAGKKGLKPADFS >gi|300497596|gb|AEAT01000017.1| GENE 2 1286 - 1480 290 64 aa, chain + ## HITS:1 COG:no KEGG:Ldb0552 NR:ns ## KEGG: Ldb0552 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 64 1 64 64 74 93.0 1e-12 MTVNIFPLLGDSLLIVLAGFGLVYSFDGSLGQKTRRILRIASLLLLLAIIPLTIWILQHP LLIN >gi|300497596|gb|AEAT01000017.1| GENE 3 1566 - 3020 2034 484 aa, chain - ## HITS:1 COG:STM0969 KEGG:ns NR:ns ## COG: STM0969 COG0531 # Protein_GI_number: 16764329 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Salmonella typhimurium LT2 # 11 473 9 470 473 307 37.0 3e-83 MIEETPKKHYMAWMTLAMLDFVTIIRFEDVFYPYQNQGLSVIFSWIFLLICYQLPYTLIA TQLGLAYKDTEEGGLASWIRRGTGSDVLGYATSWMYWAQTVPYLVDVSNSIIVSISWMIL GNNTLGKHMSPFMFGLLTFVIILIFILCESAYKNSLDLLSLIGGIAMFAMSVIFVILIIW ALMHGGHIATKMEWSSFKPNFSVHYFSTTGLLIFAMSGAELAAPYVTRLKNPRKEFPKSM WMLFAMTVFMTLTETLGLAVLFDAKHIPHDFKMNGAFYAFQLLGEEAGMGKSLMYMYAIV CLLNFMADLAALIDAASRVFASDTSEKYMPSWLRKKNKDGLPVNSYVLTCSITLFLLLLS GTLPEINDIFNWLLNLNGIVSPYKTSVVFLAFLAFRYRHKTFAKDDFVFIRNNKGALAVG WWCFIFTFICATMGFLPQDVTFESPQWTKQLWMNIITVIVLFGTGSLLPWLRKLELKHQA KANS >gi|300497596|gb|AEAT01000017.1| GENE 4 3338 - 3574 63 78 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRQLRMLFGKKSLKVYNLPMHTTIFYKDTELSGTRFYEKCQVTERNRYEKVFANNRDTFV RCSYSRLFVLALCWPFLL >gi|300497596|gb|AEAT01000017.1| GENE 5 3480 - 3722 182 80 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0491 NR:ns ## KEGG: LDBND_0491 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 80 1 80 80 142 96.0 3e-33 MKKFLRITATLLSAAAILDSLYWLFVGHSYFRVAFLKLTGGNGIPGWLQIAVIAGILLFL SQYDWFFDHFLRDERDRKYK >gi|300497596|gb|AEAT01000017.1| GENE 6 3762 - 5849 2409 695 aa, chain + ## HITS:1 COG:YPO0960 KEGG:ns NR:ns ## COG: YPO0960 COG1982 # Protein_GI_number: 16121263 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Yersinia pestis # 73 692 94 714 720 593 45.0 1e-169 MRYLAIAAKKELLPYLPIDWPRTELTELVNPASLAAVVIDEKDSRSRGIYQTMKEKLGLD LPLIEFTPETSPAEISRLAQTYEEANVPRFIRELTAFSDQDDLVFDTPGHHNGRFYDRHP AGAVLRNFFGDNYFRADTSDCVSELGDMMNHTGGPLEAQQEAAKAFNADKVYFCTNGTTS ANTICTTALLDEGDLVLFDRNNHKSIYNSALVMTGAKPVYLPTDRNADGLIGPLTAASLD EDLIRREIAKVAPGRAKADRPFRLAVLQLETYDGIFYDAKLILKKLGRLCDYILFDCAWG GYEQFVDVLRDFSPFQQTYGPDDPGILVTQSVHKQQAGVGQASQILKKDSHIKGQKRYVD HKHFNHAYMKYVTTSYSYPVYASLVANSAMAASPAVNSWWNDTVKLGIDFRKRLLKESKL FKPLVPPTVHGQKWENLPTDVLAQDPEAWKLSPDDDWHGFKLLAPGEVALSPVKVTLMTP GIDLAKAAFTEEGIPGAIVSLYLHEKHIIPEKSDSYSTLYLLTPGEGQVDMNGLFSALMA FEEAYLTKAPLSAIMPELVAQYPDRYEGYTLYQLCQELHHYYQEHEIFKLQQALFLKDSF QNYELTPKEADREFVHGNSELVKLADAKGRMALEGALPYPPGVFIVAPGERWQDLDVAYF QVLLGAARKFPGLDPEIQGVYQEDGEVWAEVLKES >gi|300497596|gb|AEAT01000017.1| GENE 7 5930 - 7180 2026 416 aa, chain - ## HITS:1 COG:SA1148 KEGG:ns NR:ns ## COG: SA1148 COG4100 # Protein_GI_number: 15926890 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Staphylococcus aureus N315 # 6 412 2 406 412 426 51.0 1e-119 MNNLPEELAKIVKEVDEQIAGRLHEIDEQVIYNQAKVLEAFVDNAVAESDLKGTNGYGDD DEGRDKLERVYAQVFHTEDALVRPQFVSGTHTLATALDGNLVPGDTLTYLTGMPYDTLQH AIGLTPDKAGTLIEKGVKFSYVPLKEDGSVDFEEGEKILKRDQPKIVAIQRSRGYDTRES FPVAKVKEMIDFIKEVSPQSLIFVDNCYGEFSEKHEPTEYGADFMAGSLIKNAGGGIAQT GGYIVGRKDLIHRAASRLFAPGISDSEGPTLNSLHEFYEGFFLAPNVTGEAIKGMIYSAA LMEKLGFDVSPKWDAPRTDLIELITFNDKEKMIKFCQEVQKNSPVDSFVTPIPSHMRGYE DEVIMAGGTFVSGSTVEFSADGPIRPPYAVYMQGGLTYAHDKIAVTNAVKSVLFGD >gi|300497596|gb|AEAT01000017.1| GENE 8 7293 - 8576 1061 427 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 14 427 5 426 447 413 49 1e-114 MKEDKTFRNPEAVLDVQDKPKFGPWLLLSIQHLFTMFGSTVLVPLLIGLNPSIALFCSGV GTLVYILCTQAKIPAYLGSSFAFIATMQALMKNYGYPAVGQGAIAAGLVYVIVALLIARF GSRWLDKILPPIVVGPIIIVIGLSLATTAANDAMFNASGKYSLTYFGVAIFTLVITIIFN MFLKGFPSMIPVLLGIICGYLMALFCGIVDLSGVESAKWFSLPAFDVLGVSYKFKWYPAA IITMAPIAFVTMTEHMGHIMVLNKLTKRNFFEDPGLHRTLLGDGLSSIIAGFLGGPPTTS YGENIGVLAMTKVHSVFVLGGAAFFAIVFSFVGKVSAVIESIPTPVIGGISFLLFGMIAA NGLRILVDNKVDFEKKRNLVIASVILVIGIGGTYLKIGSFQLTSIGLATVFGILLNLILP EKAASEQ >gi|300497596|gb|AEAT01000017.1| GENE 9 8808 - 9299 517 163 aa, chain - ## HITS:1 COG:SPy0851 KEGG:ns NR:ns ## COG: SPy0851 COG3641 # Protein_GI_number: 15674884 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Streptococcus pyogenes M1 GAS # 35 159 226 349 352 108 50.0 6e-24 MLVFNKNSKKIKYPEKESGFLLFNKKIMKVLTKSIAKAGSFLFWATMKVDKPGVQVAIFL GAIKMMMPNFLRYPVIGIPIALTAAISTLSVPILGMQGTPASGGFGLIGAVSPLAAYNAG FHNVLVLVIVWVVVPFAVGYLMKKIFVDWTKICKPEYFISPAH >gi|300497596|gb|AEAT01000017.1| GENE 10 9543 - 10853 1565 436 aa, chain - ## HITS:1 COG:lin2856 KEGG:ns NR:ns ## COG: lin2856 COG1455 # Protein_GI_number: 16801916 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 4 427 7 450 454 318 41.0 1e-86 MIDWLERHLLPLANNLASVRWLVALRDAFISTLPISLTGSVAVLIKSLIIAANRNWGWHV FYQLMQPSISICNFVWRGSVAMFALFFVLSWGYQLAKACEVDPLAGAMTALCSFMMSIAN YSYLMQGNKRIKLDQAFNIKQLSTTGMFTAILFGGLGVALYILGVKARLGLHIHTAMPPA QIAAFEAAIPVMLALFIVGGLNYLFQTITGQYFGDWFLEIIQLPLLKLGQGFIMVIAITA LTQLFWFFGINGASALAPVVGSIWATAQNANLLAAANGHKIPYLWTNTSFVVFGVNGVCL PLVIAILLTSKRGDQRTLAKVALAPAVFNVNEPMLYGLPIILNPVCFLPFTLAPLANVSL AYLATKLGWINRVQASVPNIMPPVIGPYLATNYDWRALVLSPVNLVIAVLIWLPFVKAAD QIGQTDEPRRFFMPQY >gi|300497596|gb|AEAT01000017.1| GENE 11 10855 - 12099 1939 414 aa, chain - ## HITS:1 COG:lin1833 KEGG:ns NR:ns ## COG: lin1833 COG0513 # Protein_GI_number: 16800900 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 12 399 15 419 442 195 31.0 1e-49 MIYTEQIQAVLQKEGKSQPTLIQKETYEAIKNGASLVALAKTGTGKTLAYALPALERVIP GEKNSLVILAPTTELAVQIRNAILPFAKALGLKTLALVGAGNRQRQDERLKKDNCEVLVC TPGRFFDFFSSGRIKLVQIKTLVIDEADDILEFAKLELLSSLGQNLPSSSQILLFGATES QITQEAEEIFARHFLLVDVRPDQGSQTEHVFLQVDNEHKLEYLQRLCKLDGFRGLLFFDS NEGMLRFARIFAHSKTRFEVLANNFSKDKRQQAIRDLAKGKVKLLLATDLAARGLDIPKL TYVVNYEIPTDANTYMHRAGRTGRMQQEGKVVSLGNDHDLRKLKKLLEGEVTVDRVYFAG YHLSKEKPVKKEKAEDKDKPAIIEQPVKKKKKSKKKNKNKGYHPHYLKGKKQSE >gi|300497596|gb|AEAT01000017.1| GENE 12 12096 - 12782 816 228 aa, chain - ## HITS:1 COG:no KEGG:Ldb0540 NR:ns ## KEGG: Ldb0540 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 228 1 228 228 390 98.0 1e-107 MGQKKHFQHPATLPALLILLAAIISLLAYGLYNYASQTTLPKGASQSAVGLKVSQADFDL SRLEKGGLSFVYLPVDQNFTARREQVAKTKLAYGSIIEVQGEKNAAKQLSRAKRLAAGHW GALPILLDSGQDDPSAANLTAMSKLAYSLVKSHEIMVNAPVKYKKLFPAGCKFLATSASA PSKLDYCFWRYTEKGHVAGVSGIGCKNVMYAYIGTSQQYKEKYGQLAQ >gi|300497596|gb|AEAT01000017.1| GENE 13 12868 - 14181 1678 437 aa, chain + ## HITS:1 COG:SA1270 KEGG:ns NR:ns ## COG: SA1270 COG0531 # Protein_GI_number: 15927018 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 8 435 7 435 440 333 47.0 3e-91 MFYWRYFVKKQISFGQALATVIGSVIGAGVFFKIGSISQSTGSASATILVWLLAGVISIC SGLTVSEIAAALNVNGAIEYLDYSYGNIWGFLFGWAEMTVYFPAQIAALASIFGQQFVVL AGLPASGSKWIAAGVVLLLFLINMLGTKASAWMQSVITVIKLIPLFLIIVFAIIRPQVSV SLWPVTVDSSGGWLAGISQGLLSALFAFEGWIVVTNLAKEMKNPKKDLARAIILGLSLVT VVYVLVNYAFMAVLPFDKIIGNDNTAYYASLKLFGQAGGKIVTVGILLSVYGACNGFMLT GMRTPYILAQANRLPGSEKLAKTSVRSGVPVFSALLINAIALIMISLGNFEILTDMLVFV MWTFTTLLSVAVILLRKREPDLARPFMTPAYPVIPLISIIGGLFIIVMTVINQFALSMIG LGITLLGLPVYYWKKLH >gi|300497596|gb|AEAT01000017.1| GENE 14 14261 - 14833 902 190 aa, chain - ## HITS:1 COG:lin0251_2 KEGG:ns NR:ns ## COG: lin0251_2 COG0634 # Protein_GI_number: 16799328 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Listeria innocua # 4 182 1 179 179 182 50.0 3e-46 MKSIHDAVDHKLYSEEDIAEMTKRLGQQLTKDYAGKRVLVVGALKGAIFFLTDLLREMDL ACDIDFIDVSSYGNGTESSGKITVTHDLEADVTGRDVLIVEDIVDTGLTLKFMKDELLSR GANSVKCCVLLNKTARRTTEVDVEYYGTHVGNEFVIGYGMDFAGLYRNLPYIGVIKPEVV EEFSSKHEHD >gi|300497596|gb|AEAT01000017.1| GENE 15 14942 - 16288 1850 448 aa, chain - ## HITS:1 COG:L84992 KEGG:ns NR:ns ## COG: L84992 COG1253 # Protein_GI_number: 15673816 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 8 427 3 419 430 243 31.0 7e-64 MTTTQIWINLLAIGVIFVFASFFVAAEFALVQVRPSQLEDMIANGQGNVKKLKRALHMSQ NLNEYLSTTQVGTTLVGVILGWFGADTIASIFERLLALTPISKNLVNSVGALIGVIALTY LEVVLTEVVPKNIAIDAPVKMLMWIVNPLQLFHTLVYPFVWLLNVSSSGILKMLGFNPAD EENQVYSQSEIIRLSKNAVHGGALDKEDLTYMERAFQLNDKTAKDIMTDRTRLTVLDASE NIKTALDKYLEDGYSRFPVVRENDKDDVVGYVYAYDIVQQSRIDDRVPVTRINRTIITVP ESMPIQDILRLMISKHTPIVLVVDEYGGTSGIVTDKDIYEELFGSVKDEIDDVSDDYIIK DAEGNIRVSGKTTLYDFERYFHQNLKSFQNSDIITIGGYMMERYPDLKKGESIELEGFRF TLDDIQQGFMRWFIVEGPKTNDQAKKEE >gi|300497596|gb|AEAT01000017.1| GENE 16 16428 - 16793 519 121 aa, chain - ## HITS:1 COG:SP0466 KEGG:ns NR:ns ## COG: SP0466 COG3764 # Protein_GI_number: 15900382 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Streptococcus pneumoniae TIGR4 # 1 121 146 271 279 111 47.0 4e-25 MKKGDVFYVHNLGQTLAYKVDQIKVIKPTQVDQLKIVKGKDLCTLMTCTPYMINTHRLLV TGHRIPYNQKAEAKAKERIRNRLFWNIIAILLPVLAIIIFIWHKKRKKKKQAKADKEKEQ E >gi|300497596|gb|AEAT01000017.1| GENE 17 16930 - 19332 3834 800 aa, chain - ## HITS:1 COG:CAC1343 KEGG:ns NR:ns ## COG: CAC1343 COG3957 # Protein_GI_number: 15894622 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoketolase # Organism: Clostridium acetobutylicum # 7 795 15 794 796 933 56.0 0 MTADYDSKEYLKSVDAWWRAANYLSVGQLFLLKNPLLKEELTADDVKIKPVGHWGTIAPQ NFIYAHLNRVIKKYDLNMFYIEGSGHGGQVMVSNSYLDGSYSEIYPEISQDEAGMTKLFK RFSFPGGVASHAAPETPGSIHEGGELGYTLSHATGAILDNPDVIAAAEIGDGEAETGPLA AGWFSNRFINPVKDGAVLPILQVNGFKISNPTITARMSDEELTKYFEGMGWKPYFVSTFK GGRFDGMKDIDQIHEEMAKTLDAIIEDIKAIQKNARENGDESFAHWPLLIFQCPKGWTGP KADLDGNPIENSFRAHQIPLPVDQKHMDHKELLLDWLKSYKPEELFDETGYPSDLVLQNA VHGDQRMAMNPVTNGGINPKRLNLPDWRDFAFEVGKPGSKDAQDMVEWAKYLTKVAELNP TTFRGFGPDESKSNRLFGFLDGEKRQWESEIHEPNDENLAAQGRLIDSQLSEHQDEGMLE GYVLTGRHGFFATYEAFGRVVDSMLTQHMKWLRKAKEQYWRRDYPSLNFVATSTVFQQDH NGYTHQDPGLLTHLFEKNRPDMIHEYLPADTNTLLAVADKAFRDREGINLLVTSKQERPQ WFTPEEAAKLVDKGLGYIDWASTDKDAKPDVVFASTETEPTMETLAAIDILHQNFPDLKI RYINVVDVMKLMAPKDNPAAISQEEFDRLFPTDVPTIFAWHGYKTMMESIWFARKRYNVS IHCYEENGDITTAFDMRVLNHLDRFDLAKDAVEQIPALKDKSAAFIDKMDSLLSKHHAYI RDHGEDIPEVTSWKWTGLDK >gi|300497596|gb|AEAT01000017.1| GENE 18 19536 - 20258 926 240 aa, chain - ## HITS:1 COG:SP2020 KEGG:ns NR:ns ## COG: SP2020 COG2188 # Protein_GI_number: 15901841 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 6 236 5 236 242 135 34.0 7e-32 MADYVYRTVMLDIKRRILAGEYEGMRLPDERSLAEQYQVSRSSMKRALELLAQQGIVFKK RGSGTFINPLYLKNQAMFRYEGSNLGLTDSFLAPGKKQGIKLLEFKVVKASPETAQDLFL SENDFVYQFKRLRLLDGQPFLIEEGFVPIKILPELKEEILQGSLFNYLEDAQNKAVTRSY LTITVSPSSAEDQEALQLKATEPVGVMDGIFFLDDGTPFEVSSMRVHYKYMRFNSFVNLN >gi|300497596|gb|AEAT01000017.1| GENE 19 20267 - 21202 1519 311 aa, chain - ## HITS:1 COG:STM0051 KEGG:ns NR:ns ## COG: STM0051 COG1957 # Protein_GI_number: 16763441 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Salmonella typhimurium LT2 # 6 310 7 305 306 228 41.0 1e-59 MNKKPLIISTDPGIDDAVCLTIALFAKELDVKLIVPTWGNVSLEKTLNNTLRLQAFLGTK VPVVAGAKLPLVKEAIDASEVHGASGMDGFDFPEADQSLLVEGLAATKIHEVVSQSPEKV TLMQIGPATDFALYFRQYPEDLDKIDRLYIMGGALGRGNYGPYDEYNVSGDPEAAKIVFD LGAKGLDIYVAPLEVGNQAFVDAASLEEIKALGRVGEMIYGLNSQYELNDADADSGKRIY DALTAAMLLAPDLFEVKEAYVAVDTKGPYTYGASVMDFEGFFGQKANAKIAVKVDRQAFK DWFLAAIAQAK >gi|300497596|gb|AEAT01000017.1| GENE 20 21298 - 21990 1026 230 aa, chain - ## HITS:1 COG:SP0828 KEGG:ns NR:ns ## COG: SP0828 COG0120 # Protein_GI_number: 15900715 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 9 223 4 217 227 193 50.0 3e-49 MDQAKQDVLKKAAAKKAAALVEEGMVLGIGTGSTVKFFIDELGKKKAAGLTLKAVVTTSS RSQKQLEGYGFTVSPLSEVDQVDLTVDGADRVDKQLNGIKGGGAALTLEKNVAVNSKKNV WIVDESKVVDHLSGFALPVEVLPISCMQVEKRLADEGLKPEFRLTEDGQRLKTHYGNYIL DLKLDRIPVPSGLADYLDHTVGVVEHGLFLNICDQVIIARDNGEIEVRSR >gi|300497596|gb|AEAT01000017.1| GENE 21 22003 - 22653 714 216 aa, chain - ## HITS:1 COG:lin1932 KEGG:ns NR:ns ## COG: lin1932 COG0036 # Protein_GI_number: 16800998 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Listeria innocua # 3 214 4 216 218 173 43.0 2e-43 MIIAPSILNADNLHLGQQIQEAADSGIRRFHIDVMDGHFVPNLSYGPQLVSDFKKQFPDL TAEVHLMSNNLPDLLPAFVKAGSDLIEIHYEADYPNRIDHWLDYLKENGVSCGLVLSPDT DIKVLERYKDKLDQVLLMTVYPGFGGQKFMEEAADRIRAARAILPDLPIEVDGGINAQTA EIAKEAGADVFVAGSYIFGRDSVANQVAELTSILEK >gi|300497596|gb|AEAT01000017.1| GENE 22 22669 - 23589 1304 306 aa, chain - ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 3 295 4 296 304 247 47.0 2e-65 MKKIVVIGSSNVDTTLHVENFPKPGETINAHKVSEAGGGKGANQAVAAAKSAAETIFISR VGEDSYGSWMKEQLAGYGVKTDYVLPTAGVKTGHAYITLNAEGQNDIIIDHGANYSLTEA DVLAAKDVIEAADCVIAQLETPLEATTAAFKLAKAAGKVTILNPAPAIKDLPADLLAVTD LITPNETESALLTSLPVVEEADLEKNAAKLHELGVKHVIITYGSKGAYLSSPVFTGLVPA FKVKAVDTTAAGDTFLGFLAGSLASDFSNLHEAARFANRASSLAVQKMGAQPSIPDRASV ASALAE >gi|300497596|gb|AEAT01000017.1| GENE 23 23656 - 24153 666 165 aa, chain - ## HITS:1 COG:no KEGG:Ldb0528 NR:ns ## KEGG: Ldb0528 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 165 1 165 165 288 98.0 6e-77 MKIEEVLAKQLLAEDPSIERFEEDFYGDFYDYFVNFLKFKCLSQGKDLASLEKRKLVLYL DLFNSQDFPGRKAYRYKLVFDSQLNFLAAESDFTLSALCRDLRGRVDQLSDYEAVRSQAL ASLAERFDSKNPDPNTRIQNFNVVLADLYDRYNLSRFKTAYQLVG >gi|300497596|gb|AEAT01000017.1| GENE 24 24220 - 25140 979 306 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0468 NR:ns ## KEGG: LDBND_0468 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 6 301 1 296 300 587 98.0 1e-166 MINEELTDLDRVELTKLSYEALNVGETVVVAGKKIGQLTRDVYAKDGMQAFLIENNNEIT VLFKGSYGFKKGNATTWRDEWLNTNWPIFLAMLTNQRQVPSALVTASRYLNRWLEEFPDG HFYIYGHSLGAINAEYALANCRFPDQIAAAYLYEGTNIWRLLTHKERQLLAQLRGRINTY VDIYDPVTLGYTASKRMVGKLHYVDSLPMNPVKQHMWGGYRFDQAGNLLEKEVDQRFLDS SKMQQAFLSRTGRMANYLRYRRNLQADWQKESDQRAEQIRGELFNHSFLQDFNDRDKNSK DGKGGS >gi|300497596|gb|AEAT01000017.1| GENE 25 25137 - 26534 1793 465 aa, chain - ## HITS:1 COG:XF1486 KEGG:ns NR:ns ## COG: XF1486 COG4320 # Protein_GI_number: 15838087 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Xylella fastidiosa 9a5c # 67 454 47 440 451 91 22.0 3e-18 MEKDRHEIETFKIDQMFIGDSQEELIKQGEGRRKEHPIAAISTFNPVKRDVFQLIKLTEE KMIPELLGMRHKRMMQNPFSYFRATAGIMEKDLRQFPDGQSHIPVIICGDSHLTNFGFFA SPERQLLFGLNDFDEARIGNWEFDLKRLLTSVVLTGRINGYPKEQLDGTLAESVHSYRRG IKYANSLPLLERFNLSYSVDDLLGQMTDNEQMKRVLLKVADRAPKNNSDAVVKKFTEKTE DGRLRFKENPPRARRVSQKVYAELMAGLEDYQKSVTDDIRVLLINYEVTDIIRYSVGVGS WGTRCYLALLTGKDGSHLVLQIKEALPLRYNLSALTVEESQAQGKGEGKRIITAQRVLQT YHDPFLGAMEAGGRSFYVRQFRDMKDSIDPLNLDQESFSAYCNMCAFILAIAHYQSPTAP MIYGYVHKQKELDTGLAHWAVKYADQMEADYARFAKYLQGEEDEK >gi|300497596|gb|AEAT01000017.1| GENE 26 26543 - 28708 3076 721 aa, chain - ## HITS:1 COG:BH1392 KEGG:ns NR:ns ## COG: BH1392 COG0855 # Protein_GI_number: 15613955 # Func_class: P Inorganic ion transport and metabolism # Function: Polyphosphate kinase # Organism: Bacillus halodurans # 10 656 14 666 705 613 48.0 1e-175 MTNAKNKKKFTDPSYYANRELSWLDFNDRCLDEARNPDEPLLERANFLGITQSNVDEFYM VRVASLSKLVAAGVKSHDASGLTPLEQLTAINHKEHEVVEKRYSTYSRSLLPLLRKNGIN ILESDELSEDQEEYIRRYFSNELYPVLTPMADDQSRPFPFINNDSLNIALRLKDRESGEH KFATVRVPNIFPRLVKLPDGDNDFIMLEDIIKVFADRLFDGYEIRQAACYRVTRDMDLDV SESDTSDFLLAVKKQLEDREHGHVTRLEVESSMNTKLLKHLIKRLNVDEGSVFSINGPID LTFLKKLPGMVEGHEDLRYKPMQAFVDPALRSDHNIFDSIREKDYLVQHPYDSFDAVLNF VKQAAKDPDVLAIKMTLYRVSGNSPIIKYLGQAAKAGKQVTVLVEVKARFDESNNVHWAR TLEQMGCHVIYGLVGLKTHTKVTLVIRRDEDGICRYLHLGTGNYNDVTAHFYTDLGLFTC DRDLGVDVTNLFNMLSGYSKPPYFSELRISPKLIRQFIYEKINNEIAIAKAGRHAEIHMK MNSLSDPDVIAKLYEASAAGVKIHLIVRGICCLKTEIPGVSDNIEVHSIVGRFLEHSRIY YFYNDGKEDVYLASADMMRRNLDRRVETLFPVLQEDLRERVLDIFAKMWQDNVQARILHK TEWVHADRRGQTPFNSQEYFIAEANEKVRIVKEEEEEEKAKKKDAFEAMKPQESELEDDE K >gi|300497596|gb|AEAT01000017.1| GENE 27 28712 - 30223 2104 503 aa, chain - ## HITS:1 COG:MA0083 KEGG:ns NR:ns ## COG: MA0083 COG0248 # Protein_GI_number: 20088982 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Methanosarcina acetivorans str.C2A # 328 498 345 518 543 65 25.0 3e-10 MSKRQFGLIYISSYQARLFIVDLKRLAIIEQLSSAQFVQGGKKFEVYENELPRLTDALIG FKRKIAEYGIDNYKVYGNRQLLDKISARYLADQIKVRTGLEIEWLNGAQIAYYKIIAGMA LPQFSELADDEFTYLLSMGSAMINLTLFKGQHYLSTWNFALGPEEIEEMAAMTRDTPSDP IDIIGDYISRKLVSFKTIEKPTGKARIIIQHVSGRGEQSLRPQEKDRVIDLKQFAGVYSD FREAPDQYLMEKYELDTDSLARMKPTIVLINQLVKIIKPHTMTLTQSSAITGLMIQEAAR LKYRPDEYSTIVLTATKNIARRYESGGQHINLSNKFALHIFDRLAHAGMVDRRDRQLLEI AARLHDIGNFVNFHNHYEHAAYIVGANQIIGLSDRENEMLLSILKHQDITNLNADEREYR HLDPALQVRVAKLAAILRLANSLDASRKQKISKIVVSIKDEKMLITVTSKRDLTLERWVF EKNVNLAEAVFGMKIAMKQKRGK >gi|300497596|gb|AEAT01000017.1| GENE 28 30429 - 31274 1136 281 aa, chain - ## HITS:1 COG:BS_glnH KEGG:ns NR:ns ## COG: BS_glnH COG0834 # Protein_GI_number: 16079797 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 8 268 9 272 273 177 35.0 2e-44 MARKLRELTAFMAVLLLSLVFTACSHSQSSSTYDRVKQTNTITWGMRADTRLFSMMDVDS SKATGFEVDLARAVTKQILGPKGKMKIEYISEKSRIMDLKIGNVDAVMATMTNTPDRRKI INFSDTYFMAGETLIVPKKSKLNSIKDFNNSKYSIAAVKGSTADSDVHKYAPKARVIFYD DYGSCYNALKAGKTNAMVSDNAVLAGLISDDKDKFKMLPDTFTVEPYGIGIKKGEDKFTA EVNQALKVLRKNGTYARLMKKWFNGVPGFNIKSSSRLKASE >gi|300497596|gb|AEAT01000017.1| GENE 29 31316 - 31984 1058 222 aa, chain - ## HITS:1 COG:BS_glnP KEGG:ns NR:ns ## COG: BS_glnP COG0765 # Protein_GI_number: 16079799 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 7 219 6 216 218 176 47.0 4e-44 MENLTEALSWINLRFLLQGFWVTIEVSVISIILSFVIGLALGLIRFTRIDAKTTRISKVV GVIIDIIRNLPLLLIIFFSYFGLPVMGIRVDAVQASVIAMVVFESAMIAEVVRSGIMAVD PGQMEGARSNGMTYMQAMTHVVLPQALTKMIPALLSQFVSLIKDTSLATIIVLPELLYHA EIIYNQNTNYMIPMYLAVAVMYFIICFALSSFANYLSKRIKY >gi|300497596|gb|AEAT01000017.1| GENE 30 31996 - 32637 955 213 aa, chain - ## HITS:1 COG:BS_glnM KEGG:ns NR:ns ## COG: BS_glnM COG0765 # Protein_GI_number: 16079798 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Bacillus subtilis # 2 211 3 211 216 201 54.0 9e-52 MLNLLGANWSTFLLGFWNTILCSLISLFFSLIIGSGFAILETVPNKFWRGVAKVYVEIFR NIPLLVVTMVFYLVLPTYTPLKLTGFQAGTIGLSIYSSAFIAETVRSGIQSVGTGQMEGA RSNGMTYWQAMRYVILPQAFRIVIPPLGNQLVNLIKNSSILAFVAGFDLMYQGDIVASNT FQTIPSYVLVSLFYLVLTLPLSYYMQYLEKKGV >gi|300497596|gb|AEAT01000017.1| GENE 31 32637 - 33476 1187 279 aa, chain - ## HITS:1 COG:BS_glnH KEGG:ns NR:ns ## COG: BS_glnH COG0834 # Protein_GI_number: 16079797 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 14 271 9 272 273 209 44.0 4e-54 MKHTKLFRKVAALLFLLLTTVSLSACAVESDNSVRVYNHVKSSKTITWGVKFDTALFGIK SVKTNKLEGFEIDLARLLTKEILGKDGKAKFIEVTAQTKIPQLKNNNLDAVLATMTITDE RKKSVDFSTPYFKAGTSLMTKTSSPIKSIKDLNHKGRVAIVVKGTTAADDIARLAPKAKI RQYNDYGACTNALLAGQGDAVATDNGILAGIADQQKSLHLVGGTVAVEPYGIAVEKGQTK MLEAINKALKEAKADGSYHKLVKKWFGNIPGFSVKEAEY >gi|300497596|gb|AEAT01000017.1| GENE 32 33499 - 34239 306 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 221 1 218 311 122 31 5e-27 MAAIIEFKKVNKFYGDYHALKDVNLSINEGEVVSIIGPSGAGKSTLIRTMNGLEGISSGV LEVDGYDLGDKKTDLNKIRRNVGMVFQHFNLYENHTVLENVMLAPRIVLHRDEKENREIA EKLLKQVGLLDKEDSYPRQLSGGQKQRVAIARSLAMKPKVLLFDEPTSALDPEMIQDVLD VMQSIAAEGMTMVVVTHEMGFAREVCDRVIFFEQGQVLEDSHNPKDFFEHPRNLRAQEFL SKVIYH >gi|300497596|gb|AEAT01000017.1| GENE 33 34783 - 35439 961 218 aa, chain + ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 5 207 3 205 211 238 57.0 5e-63 MSKKQHPIIIGIAGGSGSGKTTIAHELYDQFKNDRIRIITEDSYYKNHPEMSMAERNKIN FDHPDAFDTELLISQLQDLLNGKAIEMPIYDFTTHLRSPETVHVEPADIIILEGILVLAS EELRNLMDIKIFVDTDDDIRLIRRQRRDMAERGRSFDSIIDQYLATVKPSYHQFVEPSKR YANIIVPEGGANDVALDMLTTKVRDILRRNDLAEKEVE >gi|300497596|gb|AEAT01000017.1| GENE 34 35439 - 36065 1105 208 aa, chain + ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 4 206 3 205 211 232 54.0 4e-61 MAKQKPLVIGIAGGSGSGKTTVSKEISKRLPADRVLILTEDAYYNDNSALSMDERKKINY DHPNAYDTDLLIEQLQDLLDGKAIELPTYNFNILSRAKDTIHVEPADIIILEGILVLASE ELRKFMDIKLFVDADDDIRFIRRLQRDTQERGRSIDWIISQYLTTVKPSYNQFVEPSKKY ADIIIPQGGENQVAIDMVSSKLLSIING >gi|300497596|gb|AEAT01000017.1| GENE 35 36395 - 36964 1034 189 aa, chain - ## HITS:1 COG:SP0719 KEGG:ns NR:ns ## COG: SP0719 COG4721 # Protein_GI_number: 15900616 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 7 183 4 177 186 93 35.0 2e-19 MLRRESKWNVKAIILMALIGIIMGVIYTYVVNPIYNSVELALNLVGLGPLAGQICAGLWY MAAPLAMYFVPTFGSGIVGETLAATVEMAFGGQWGAMTILQGLVQGACNEIGFFPKKENY DRFGWGSLITGAVCCAVAGYVMSYLTYGWSAYKPALLIEMFIACIISSIVFDAVLVKLIT KLFDRVMAK >gi|300497596|gb|AEAT01000017.1| GENE 36 37168 - 38253 1625 361 aa, chain - ## HITS:1 COG:PAE1385 KEGG:ns NR:ns ## COG: PAE1385 COG1363 # Protein_GI_number: 18312601 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Pyrobaculum aerophilum # 7 326 5 325 362 180 35.0 3e-45 MKKAAEIQMLKDFSNANATSGFENEFVDLFTKTVKDYADLEVDGMLNVYASKKQNTGKRP VIQLDAHSDAVGFLTQAIRPNGLIKFVTLGGWNNVVLPALKVKVRNRDGEYIPGVVALKP PHFMSEAERKSVPQVADLSIDVGSSSREETINDYKIDTGCPIFVDVDCEYNEKTGLFFGK DFDDRFGAAAMADILENLKDEEVNFDLVAALSSQEEVGLRGAYVTARKIKPDLCLVLESC PADDTFEPDWLSQTGLKRGPMLRDMDVTFLPNPKFQQYACDLADKNGIPYTRSVRTGGGQ DGAAIYYENGAPTIVIGIPVRYEHSPYCFSSYKDYKAAVDLALAIIRDIDEEKLESFKSF N >gi|300497596|gb|AEAT01000017.1| GENE 37 38267 - 39688 2342 473 aa, chain - ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 2 473 6 474 474 531 56.0 1e-151 MQKPAECTTILVGKDATIDGSTMIARSEDGGSTIIPEAFIAVNPKDQPKHYKAVISGQEI DDEDLLPNPLRYTSAPDASGKNGIWAAAGINDATVAMTATETITTNSRIQGIDPLVEEGG LGEEDFVTLTLPYIHSAREGVKRLGYLVEKYGTYEMNGSAFADHDEVWYIETIGGHHWAA RRIPDDAYVAAPNRLNIDFFEFNDEENFMCSSDLLDIINEYHLNPDYQGYNLRHIFGSST IKDAHYNNPRAWYIHRYFDPEWEGEPGDQDQPFITYAKKKISPEDIKFLESSHYQDTKYD VYSTTNTEAEKKLFRPIGINRNFETHILQIRNDVEEGIAGVQWLAFGPNTFNCFVPFYTN VTTTPASFQTGPDFDLTKIFWLNKLNAQLGDTNYKVYSALEQAFEEKTMAKLRQIENETD RAVKGLTGRDLQEKLEEANQKMADLTYKQTVALTGEMVKDGHSLMKLKYDLLD >gi|300497596|gb|AEAT01000017.1| GENE 38 39766 - 40551 1213 261 aa, chain - ## HITS:1 COG:CAC3250 KEGG:ns NR:ns ## COG: CAC3250 COG0796 # Protein_GI_number: 15896495 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Clostridium acetobutylicum # 7 256 5 256 256 194 43.0 1e-49 MSKEYADRPIGVFDSGQGGLTVLSRLVDLMPNEDYVFYGDSANAPYGVKSKEEVYQLAKR VVDELIDKHQVKAVMIACNTATSAAADRLRREYSLPIIGIEPAVKPAAEENPGRQVVAMA TSLTLEQDKFNQLVAECAEPGQVAKVPAPKLVELIEKGQTDSPAIYQYLEELLAPYAGKA AGVVLGCTHFPFAKQAIQEILGPQAKVYDGAIGAAAEVKRQLASRDELNASSQPGQILFE NSAPAGADLSKRLYALYRQKH >gi|300497596|gb|AEAT01000017.1| GENE 39 40840 - 41553 1146 237 aa, chain + ## HITS:1 COG:L177346 KEGG:ns NR:ns ## COG: L177346 COG0670 # Protein_GI_number: 15673718 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Lactococcus lactis # 18 233 17 232 237 133 39.0 3e-31 MFNVSPEQERRHIVDDSALNGFLTKMYSIMGLAVLVSALTAYLTLTVFSGSLLPLLTNRV FIWVLLLLPLILSVGISFKATRKPTTAFFMLMAIAVVYGLEFSLLAFAYTGAQIGGAFIS ASAVFIGMAAYGSVTKKNLDTIGAYASAAIWGLIVASLVNMFLKSTPASFIFSIIGVIIF TILTAWDAQKMKSIYASYGDQLPELGLAVNGALMLYLDFINLFLQFLRIFGIADNDN >gi|300497596|gb|AEAT01000017.1| GENE 40 41694 - 42893 1405 399 aa, chain + ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 7 389 4 385 402 371 49.0 1e-102 MQKQPVWKRNLQVSTVSVFLAGIAFSEITPFLSLYIDTLGKFSHQQLSFWSGIVFSAVYV VAALVSPIWGKLADKKGRKPMILRASLGMAVVFTCMGLAQNVWQLLFLRGMQGVFAGFIS NSNALIASETPKNKSGKALGIMISAQTGGQLLGPFAGGALSQAFSYRVTFFITGALLFSC FILSVFFIHEDDFVPVESKQRGSFKDTMKQFKSGQLILGLLLTTLIIQAANNSINPIVSL YVRSLMHNSGQVVLVSGVIAALPGIATVAAASYFGGLGDRIGTHKIILGGLIGSIILFFL TAFVRNTVELGVCRFLVGFTDACLFPQVQTMLTKHSPKELTSRVFSWNQSAMYVGNIFGP LLGSTVSAHFGYSAVFLVTSGIVVTNLLLYRTNILKNIA >gi|300497596|gb|AEAT01000017.1| GENE 41 43300 - 43503 234 67 aa, chain + ## HITS:1 COG:no KEGG:LBUL_0448 NR:ns ## KEGG: LBUL_0448 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 67 55 121 121 67 97.0 1e-10 MLICEAWLSLRINKLDDRGIFFFLAALLLLTAGEMVATVALGSGFLWLNLLQLLLVLLAR FAIDFHE >gi|300497596|gb|AEAT01000017.1| GENE 42 43530 - 43766 126 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300811390|ref|ZP_07091886.1| ## NR: gi|300811390|ref|ZP_07091886.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 1 78 10 87 87 122 100.0 1e-26 MVKLILELHHFIFSFHGQVIRQDKDHKDIPVVTVFHIPAQYIALYMRSIGHESLFFYYVS FAAFISLLVYVFALKGHR >gi|300497596|gb|AEAT01000017.1| GENE 43 43846 - 45468 2336 540 aa, chain - ## HITS:1 COG:SP2230 KEGG:ns NR:ns ## COG: SP2230 COG0488 # Protein_GI_number: 15902034 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 540 1 538 540 686 62.0 0 MITVTDLSLQIGSRTLYSDVNLKFTPGNCYGIIGANGAGKSTFLKLLEGKMEPTTGSISM GPNERMSSLNQDHFAFEDFSVMETVIQGHQKLYQVMKERDALYAKADFSEEDGVKAAELE TEFAELDGWNAEADAAQLLQSMSIPEDMHQKQMSELAESDKVKVLLAQALFGNPDILLLD EPTNGLDVHTTAWLENFLADYENIVLVVSHDRHFLNQVCTQMCDVDRGQIKLYVGNYDFW YESSKLATELARQQNAKKEEQIKQLQEFIARFSANASKSKQATSRKKQLDKISLDDIKPS SRKYPYIKFEMNRDLGNDLLRVDNVSYKSGDEQLLDNVSFIIRPGDKVAFLSRNTRATTA LMEIIAGRLEPDSGTVTWGQTTSFNYMSRDLNANFDNDELTILDWLRQYADKEHDDNTFL RGFLGRMLFSGDEINKQIKVLSGGEEVRCQLSRMMLEAANVLVMDDPTNHLDLESITALN EAMENYPGSILFTSHDHEFIQTIANHVIEVGPKGVVARADISYDDFLAQPTVREQVAKIY >gi|300497596|gb|AEAT01000017.1| GENE 44 45650 - 46594 1215 314 aa, chain + ## HITS:1 COG:CAC2949 KEGG:ns NR:ns ## COG: CAC2949 COG0679 # Protein_GI_number: 15896202 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Clostridium acetobutylicum # 86 306 82 303 305 103 30.0 6e-22 MAFFISLEQICIMFILMAIGFLCRKKGMIHEETGKDLTAILVYIVGPCLIINAFERPASA SLIKDFGLTFLAGSLNYLFPIAFSSLFLRLPRLKNDPDKQLIAFGAVYNNCGFIGIPLIQ ALLGSKGTFFAVPILVLNNIFVWSHGIGTFKKRQPLADTLRTVLFNPNIIATAIGFVLFI TGASLKFPAVIDRSVSYVASLNTPLSMIVIGSNLGTISGDFYKDSKAWLICFLRNFLMPA CMSVILLLVPLSTTAYLAVVIMAAAPVAGFIVMLSLLANRPVAFPMRCLCLSTLMSVVSV PLIIMLASWLKQLV >gi|300497596|gb|AEAT01000017.1| GENE 45 46763 - 49492 4519 909 aa, chain + ## HITS:1 COG:SPy0608 KEGG:ns NR:ns ## COG: SPy0608 COG2352 # Protein_GI_number: 15674689 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxylase # Organism: Streptococcus pyogenes M1 GAS # 1 909 1 920 920 1129 64.0 0 MTAKKLENNSNHAVIAEEVKILTDLLDESTRHLVGDEEFAKIKGLVKIAASSDHSQLESQ IACLSNQEMIIVARYFATLPLLINITEDVDLASEVNLLNNTDKDYLGKLESTVDLVAEKD NATEILSHVNVVPVLTAHPTQVQRKTILELTNKIHDQLRRYRDFKTGTINRKEWTNQLRR YIEIIMQTDIIREKKLKVSNEIKNVMVYYPDSLIPAITKLTARYKELAREKGLNVDGATP ITMGMWIGGDRDGNPYVTAETLRLSATIQSEVIFEYYVKALNDLYRTVSVSTSYVQPTPE VAELAKLSADNSPFRENEPYRRAFYYLESRLAHTEMELLDVFSKEAVVKKEAALKAPVYK DAYEFKEDLEAIKRSLIQNHDRAVTGGHFDDLLEAIDVFGFHLATIDMRQDSSVNEACVA ELLKSARICDNYSDLDEEEKIQILLSELNNDPRSLHSSNSPKSELLQKELKIYHTARLLK DTLGENVIKQHIISHTESISDMLEQAIMLKEYGLLDSEKARVQVVPLFETVEDLQNSREI MKRYLSFDIVKRWVASKGNYQEIMLGYSDSNKDGGYLASCWSLYKAQKELTAIGEEQGIK ITFMHGRGGTVGRGGGPSYEAITSQPFGSIKDRIRTTEQGEIIQNKYGNKDAAYYNLEML VSAAVDRMVSKQNVSQDHIQDFTASMDGIVEDSNRVYRELVFDNPHFHDYFFQATPIKEV SSLNIGSRPAARKKITELSGLRAIPWVFSWSQSRVMFPGWYGVGSAFKHFIDADPNNLKE LQEMYQGWPFFHSLLSNVDMVLSKSNMEIAEKYAGLCEDEATRSVFDIIKKEWELTKEVI LQIEGHSKLLEDNPSLESSLDYRLPYFNVLNYVQLEMIKRGRQEKLSGIYESIIHITING VASGLRNSG >gi|300497596|gb|AEAT01000017.1| GENE 46 49617 - 50762 1534 381 aa, chain - ## HITS:1 COG:SP0397 KEGG:ns NR:ns ## COG: SP0397 COG0246 # Protein_GI_number: 15900317 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Streptococcus pneumoniae TIGR4 # 3 377 4 378 378 426 56.0 1e-119 MRAVHFGAGNIGRGFIGETLAANGFGIDFVDVNETIIDALVERGEYDIQLAAPGKKKIHI SNVTGINNAKNPKKVVEAIKTTNMVTTAIGPKVLKIIAPLIAQALSARVKGNREPLDVIA CENMIGGSQFLKEEVYKHLTDEDKAEVDKYVGFPNAAVDRIVPIQHNEDPLFVSVEDFKE WVIDESQMKNPKIRLEGVHYAPDLEPYIERKLFSVNTGHATVAYTGKALGYETIGEAVKD DRVVDQVTRVLAETRSLLLAKWDFSKEELEEYHAQVINRFKNPYISDDIARVGRTPIRKL GYDERFIRPIRELKARGLDYTALLETVGKIYHFDEPADAESQKLQQMLKDEPLKEVVLET TGLKDDPDLVEEIIASIKAAD >gi|300497596|gb|AEAT01000017.1| GENE 47 50765 - 51214 653 149 aa, chain - ## HITS:1 COG:L32907 KEGG:ns NR:ns ## COG: L32907 COG4668 # Protein_GI_number: 15672005 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol/fructose-specific phosphotransferase system, IIA domain # Organism: Lactococcus lactis # 1 139 1 137 143 160 55.0 6e-40 MKLEKDMIKLNQNVATREEAIRMAGQLLVDHGCVEPEYIDAMLARNADVSTYMGNFIAIP HGTDEGKKYIKKTGISVVQIPMGVDFSDPDDDQEQLVTVVFGIAGLGNEHLQLLSQIALF CSDVANVAKLADAQTPEEIIGLLDKVGEN >gi|300497596|gb|AEAT01000017.1| GENE 48 51228 - 53099 2818 623 aa, chain - ## HITS:1 COG:SP0394 KEGG:ns NR:ns ## COG: SP0394 COG2213 # Protein_GI_number: 15900314 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannitol-specific IIBC component # Organism: Streptococcus pneumoniae TIGR4 # 5 590 2 554 589 496 47.0 1e-140 MSETQSKSSAKAKIQKFGTFLSGMIMPNIGAIIAWGFMTAIFMSPNGWFPNKYINSFTSS MLYFMIPILIAYTGGKSVYEERGGVVGAISVVGTIVLAFPWANPVAQGIVYPALYPYAAN KATGIPMFLGAMIMGPLSAWCLKKFDQAFQSKVKAGFEMIYNNFSQGIMGMIFVAISYFL IGPILVVSTIWIANGVDWIIAHHLLPLANLVIEPAKVLFLNNAIGNGVLVPLGIQQAAKV GKSVLFLMESNPGPGLGILLACSIFGKGSAKSSAPGAMIVHFLGGVHEIYFPYVLMKPIL ILAAMAGGITGTFLFSILGGGLTAAASPGSIIAILLVSAKDAYFGNIVGVLGSAIVSFVV AAVIYKMDKSDYGDLAAAQGQMAAMKAESKGLTEEEAGASAVETVESYKDVQRIIFACDA GMGSSAMGASLLRDKVRKAGLNLPVTNTAVRNLKDEPGLLVITQEELAERAKEKTPNALH VAVGNFLSTPKYDQVVARLKAAGETLPEADQVKKSEKTAAKANSLASIDFSKVKEVNFIR HDQHLGTVTMASSLFKDQMKKAGKTTPVKAVRINELDNDPSHLVIVTPMAGKNLAIRYDQ IQVITVADLLKAGEVSGLVDKLK >gi|300497596|gb|AEAT01000017.1| GENE 49 53262 - 55328 1651 688 aa, chain - ## HITS:1 COG:BH3853 KEGG:ns NR:ns ## COG: BH3853 COG3711 # Protein_GI_number: 15616415 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus halodurans # 1 683 1 698 700 191 25.0 4e-48 MIVTDRQKRILQILLENEDGISLAEVEKRLETSRRTLYREFGLLRPELAKSDLTLTNKKG YLQLTGPDESIADLRGELKESQGQGEMKAEDRGNALAALLLLKDEPEKIIALADELGVSE ATVQADLAAVAESLAKYQIELKRTKGLGVQVSGKESQRRRILNGILLSESNDYVFFSYLN KEDQAKSGNFFIDLLPKKDLLKCWQAVKDLLSVFNFETDYQLIELILLFAISLDRQRQGK SVESMAAKPDSLKYQGYVYQIFAKLDVPEVTLTQNEVIFLANQMQMHEDQRVPFASDDQE VLVNLRVGQFIQDVSDQVQFDFSKNPAFSRRLQKHISALLQHSVKRLPNVRIETLSQLTM HFPQLYEAITAAWKLDFSEELNVAELQLLLLYFANEYGSRQPRRNLSALVICDNGLGTSA ILAARLQKEVPEIKQVKTARASGLAQLKLEDYDIIFSTLDLPGFPREYHLVSPLLLGGEL DRVKSEVASYVAKYPEKSTVQQPCRFKNPAAVLTQLVGESAFCQQLLQQMTLQPIGSQGM DMNAVLSAIVTAVPDEYVKDRLEVAQRLKKRLDLAPLGLPGSHLALLHTRTRAVSKCFFA IYDLAEPIAMTAMDQSKIMVKRQLLLLAPEDLPEASANVLGMISSFLVMSDQTLQLFESG NCQEIAAAIAQQYLGQVTQRLNQARGQS >gi|300497596|gb|AEAT01000017.1| GENE 50 55465 - 57276 2958 603 aa, chain - ## HITS:1 COG:SP0266 KEGG:ns NR:ns ## COG: SP0266 COG0449 # Protein_GI_number: 15900200 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 603 1 602 602 708 60.0 0 MCGIVGVVGKPAREVVLNGLKNLEYRGYDSAGIYLNDLQGHEYLTKAVGRIANLEEKLTP EEEGTTGIGHTRWATHGHPTVENAHPHYSEDGRFYLVHNGVIENYLELKEKYLAGVHFKS ETDTEVIVQLVAKLAKDENLDAFSAFKQALKLVKGSYAFLLVDNTKPDHIYIAKNKSPMM LGLGDGFNIIASDAISVLDQTKTFIALNDGDCADVTKDSIEIQDYDGNKVEREAKVLDID PNAASKGTYEFYMLKEIDEQPAVMRRLSTDYLDEAGKPVVDEKIVDAVSQADRIYIFAAG TSYHAGLVGKEIFEKFTGIPTEVGYASEAGYHFPMMSKHPFFIFLTQSGETADSRVVLTE ANKRGIPSLTMTNVEGSTLSREATYTMLLNAGPEIAVASTKAYTAQVALQAILAKAVGEK LGDQAAKDWNLKQGLSLAAEGIQEIVDGKEKIEELAKKYLVPSRNAFYIGRGIDHAVSLE GALKLKEVSYIQTEGFAAAELKHGTISLIEDGTPVIALINDPVTADLTRGNIQEVASRGA NVITIVGKQFAKEGDNIVLPEIDYYLSALLSVVPTQLLAYFASKNKGLDVDKPRNLAKSV TVE >gi|300497596|gb|AEAT01000017.1| GENE 51 57485 - 57970 714 161 aa, chain - ## HITS:1 COG:PA4784 KEGG:ns NR:ns ## COG: PA4784 COG1522 # Protein_GI_number: 15599978 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Pseudomonas aeruginosa # 6 144 1 139 155 91 33.0 5e-19 MVEYKIDKTDRRILQMLEENARISVKDIAEANFMSSPAVANRIRRMEANNLIKHYYADID YPSMGYVVKAFINLEVKPEDKSEFYPFIEKIPNVIQCDCVTGDYSMLIQAAYQRPEELDH LVNELQKFGRTKTEIAFSTPIEHRPIPVKTESDDEEDKKED >gi|300497596|gb|AEAT01000017.1| GENE 52 58096 - 58452 523 118 aa, chain - ## HITS:1 COG:L101688 KEGG:ns NR:ns ## COG: L101688 COG3759 # Protein_GI_number: 15673453 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 117 1 119 119 100 58.0 8e-22 MKIALQVLACLVAVEFFYIMYLETFATTSKKTEEVFQMDQEELSRPSVNTLFKNQGIYNG LLAVLTLIAAFALGKIVLQLVLAYMILVAAYGAVTSQPKILLMQGGLPILTLIVSFFA >gi|300497596|gb|AEAT01000017.1| GENE 53 58542 - 59108 555 188 aa, chain - ## HITS:1 COG:L1734467 KEGG:ns NR:ns ## COG: L1734467 COG0110 # Protein_GI_number: 15673662 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Lactococcus lactis # 1 185 3 187 203 102 34.0 3e-22 MDELEKMRSGDFYQLTAPEVEHYQEAGIIWNDELRQGNNLDRPAQLLRLKMHLGALGDQA VFGTSFSCLNGPNIYIGHHFLAASGLTIEDAGDVHIGDYVTMGPSCLITTIAHPRSTRQR RQRLAQAKGVEIGNDVCLGAGVTVLAGVKIGDNVVVEAGAVVAQDLPANGVFAGIPARKI ADLANDCG >gi|300497596|gb|AEAT01000017.1| GENE 54 59211 - 60539 759 442 aa, chain - ## HITS:1 COG:all7277 KEGG:ns NR:ns ## COG: all7277 COG1403 # Protein_GI_number: 17233293 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Nostoc sp. PCC 7120 # 8 315 3 317 427 110 31.0 4e-24 MKHENANRVFLLNKDGKPLMPCRPRKARLLLTSGKAFVVKKYPFTIQLKYGSYGYKQKVS LGVDTGQRHIGFAIVSQNKVLHQSEVELRQDVHKNLYTRKIYRRSKRNRKTRYRQARFLN RVHGKRDGLWLPPSIKGKVSHNIAWIKRYLAVLPNPDLHIEVGKFDMAKMVNPEISGKQY QEGSLKDWKNYEYYVLARDEYTCQLCHKHGEGVKLVVHHIVYRSQGGTDRVDNLITLCTN CHTTKNHQPGGKLYKWMKAKKKVIKQLKGATFMNILRKRIMTAFPEASFQYGSQTYVDRK NLLLPKGHFMDAIAISGIKSVGQLSDTVTMISQFRKKKRSLHEATARKGRKQPNTSSKRN EKNTKHARGLWLNDYVRVIGNHAKGYVKGFKSNGYYVYLTDGLGNYVLNNGKNYINGQQC RLIMHNVNWQKAEQKLSLYKFK >gi|300497596|gb|AEAT01000017.1| GENE 55 60950 - 62131 1402 393 aa, chain - ## HITS:1 COG:AGl374gl_3 KEGG:ns NR:ns ## COG: AGl374gl_3 COG2200 # Protein_GI_number: 15890301 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 12 260 6 254 266 154 35.0 3e-37 MEADLTLANYLLSHIDEAVDKGWIKVYYQPIVDTFSSKISTYEALARWIDPKYGFLNPGE FIEVLERGYLIHKLDLHILDLVCQDLEEAMQKGETYPMVSVNLSRYDLELPDLHERINNI LASHGVKSSQIRIEITESALLSNTEAVIKEHISRFHEDGYQVWLDDFGSGFSSLNNLQNF DFDLLKIDMAFLRHANEKTPTILMDVIDMAKRLGIETLSEGVETKDEYDFLHSIGCVLAQ GFYFSQPLPKDKITAKRKERGLEFESLAEHAFYKKIGQINVLNALYPFSGKNDQDLAETV PVMLLLDKGGDLEPIYSNKAAQNWCQSLRLRGAGFEFDCRREFLTLVKQLGETADGEIIE ENFRIKDYAGRLRLQLVAEMPGQRAYVINTNMV >gi|300497596|gb|AEAT01000017.1| GENE 56 62150 - 62308 97 52 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300811368|ref|ZP_07091864.1| ## NR: gi|300811368|ref|ZP_07091864.1| hypothetical protein HMPREF9264_1639 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] hypothetical protein HMPREF9264_1639 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 1 52 1 52 52 96 100.0 7e-19 MGKYGAFKRDFDFSGLSPLEAQKMLGYVELMNQCMDRARIAANNAVGNYQNY >gi|300497596|gb|AEAT01000017.1| GENE 57 62534 - 63040 386 168 aa, chain - ## HITS:1 COG:CAC3396 KEGG:ns NR:ns ## COG: CAC3396 COG2816 # Protein_GI_number: 15896637 # Func_class: L Replication, recombination and repair # Function: NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding # Organism: Clostridium acetobutylicum # 6 165 115 271 271 78 28.0 6e-15 MFELNYCPQCGQKLTKKELPLDGLIPYCEQCGDFRFPVFSVAVSMIVMNEGGDQVLLIKQ YGKDSYILVAGYVNKGENAEDSCRRELMEELHLTAKSLHFNRSQYFAPSNTLMLNYTVTV DQAEKGSPNEEIDAWNWLSIDEARRQIRPNSLARTFLLEYLNKCKLDR >gi|300497596|gb|AEAT01000017.1| GENE 58 63084 - 63755 672 223 aa, chain - ## HITS:1 COG:Cgl0917 KEGG:ns NR:ns ## COG: Cgl0917 COG4912 # Protein_GI_number: 19552167 # Func_class: L Replication, recombination and repair # Function: Predicted DNA alkylation repair enzyme # Organism: Corynebacterium glutamicum # 1 223 1 208 208 177 45.0 2e-44 MPPFEKYQAVKKAYAAGANKENAQAMGKYMRNLFPFYGLKTPTRRELSKPFLKGVTKEEI AWDLVDLCFKDDYREMQYFALDYLKKVQKQLTFSDLPKIKQLAETKSWWDSVDSLVKQVG QVFIRDEENKEKTAALILTWAQDPDFWVRRTAIEFQLGLKEATDPELLGKIIDCNLGSRE FFINKAIGWALRDYSKTKPAWVRSYMASRELSPLSRREGSKYI >gi|300497596|gb|AEAT01000017.1| GENE 59 63901 - 65241 1822 446 aa, chain + ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 1 426 1 428 449 317 46.0 4e-86 MKEKLTHAESLTISSMLFGLFFGAGNLIFPAYLGEASGANLWISLLGFLITGVGLPLLAI ASLGMTRSEGLLDLSGRVSHKYSYFFTCLLYLTIGPFFAIPRCFTVPFETGISALLPSGM AKSTGLFIFSLIFFAIMLFFSLRPGRIMDWIGKFLTPAFLLFFFFIMIMALLHPLGNYHA VKPVGEYASAPLISGVLAGYNTMDALAGLAFGIIVISSIRTFGVTKPEKVASATLKTGVL TCLLMAVIYAITALVGAQSRTDLGLAANGGEALSQIARHYFPGLGAVIFALMIFVACLKT AIGLITACSETFVEMFPKTLSYNKWAIIFSLLAFGIANVGLTTIISFSLPVLMLLYPLAI SLILLALTSKLFDFRQVDYQIMTAVTFLCALGDFFKALPAGMQVKAVTGLYGRALPLYQD GLGWLVPVAVTFVILTIKAAISKKRA >gi|300497596|gb|AEAT01000017.1| GENE 60 65429 - 67675 1550 748 aa, chain - ## HITS:1 COG:L70979 KEGG:ns NR:ns ## COG: L70979 COG2217 # Protein_GI_number: 15672833 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 39 740 1 690 695 566 49.0 1e-161 MANKEDHMNMKNMSAKNMENNESNMSHMDHDDMKMDHDMTETDHNQMNMDYDMAERDHSQ MNMNHETMNMSGMNHGDMDMAGTDMMMHGGSMMHMGNLKVKFWVSVVLAIPVLLLAPIMG LNVSILSFSSPLIVGIIIVLFDTALYFYGGMPFLKGAKAEIQDKSPEMMTLVTLGISVSY FFSLYAFIANNFLNPANHVMDFSFELATLILIMLLGHWIEMNALMGAGDALQKMAALLPK TAHLVTDNGETKEVPVSDLKVGQTVQVRSGESIPADGVITAGESTVNEALVTGESAAVTK NVGDKVIGGTTNNNGTLTVKISGTGDSGYLSQVMKMVQNAQQAKSKAEDKADLVAKYLFY AALGVGIIAFFAWLPQGLETAMTIMVTVFVIACPHALGLAIPLVVSRSTTIGAQNGLLVR NRQAIEASQHVSHVLLDKTGTLTEGKFTVNALIPNDGIDETTLLSRLAALENNSTHPLAQ AIIAEARAKDIEVVAAEKSQNIPGVGISGNVDGTDYMIVNGNYLTKQGIRFDEAAADKWA AKGNSVSFLLQGTQVQGMVAEGDTIKAGAKELISGLQRRGITPVMLTGDNPKAAEHVANL LGLTEFHAGLLPDDKQKIIADYQAKGNHVIMVGDGVNDAPSLATADIGIAIGAGTDVAID SADVVLVKSEPSDILHFLDLAKITNQKMVQNLWWGAGYNIVAIPLAAGVLSFMGITLDPA VGAVAMAMSSIIVAINAMGLTGKKIKNV >gi|300497596|gb|AEAT01000017.1| GENE 61 67926 - 68354 108 142 aa, chain - ## HITS:1 COG:SP0727 KEGG:ns NR:ns ## COG: SP0727 COG3682 # Protein_GI_number: 15900624 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 8 136 5 133 133 91 34.0 5e-19 MDAKNVTITDSEWMVMRAIWTMGHATSRELIDAMNELEGWSASTTKTLLHRLIQKQAVAQ HGGSRPFTYKPVVGEKESMAAAAYDLFDHMCAMRAGSTIAGVIQSRELSRADIANLQAIL AEKAKTAPEEVQCNCLPGDQTC Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:07:38 2011 Seq name: gi|300497581|gb|AEAT01000018.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00129, whole genome shotgun sequence Length of sequence - 11110 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 7, operones - 4 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 1 - 33 4.7 1 1 Tu 1 . - CDS 50 - 1369 2072 ## COG0773 UDP-N-acetylmuramate-alanine ligase - Prom 1397 - 1456 2.5 - Term 1421 - 1462 2.3 2 2 Op 1 2/0.333 - CDS 1488 - 2135 856 ## COG0073 EMAP domain 3 2 Op 2 . - CDS 2158 - 2478 297 ## COG0526 Thiol-disulfide isomerase and thioredoxins 4 2 Op 3 . - CDS 2557 - 3213 1241 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 5 2 Op 4 7/0.000 - CDS 3289 - 4506 1413 ## COG4473 Predicted ABC-type exoprotein transport system, permease component 6 2 Op 5 . - CDS 4499 - 5260 260 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 - Prom 5300 - 5359 2.7 7 3 Op 1 . + CDS 5342 - 5779 762 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 8 3 Op 2 . + CDS 5796 - 6146 591 ## LDBND_1464 hypothetical protein + Term 6162 - 6215 6.3 - Term 6150 - 6203 7.1 9 4 Tu 1 . - CDS 6226 - 7155 1350 ## COG0167 Dihydroorotate dehydrogenase - Prom 7204 - 7263 9.2 + Prom 7164 - 7223 5.9 10 5 Op 1 9/0.000 + CDS 7429 - 8151 1058 ## COG0284 Orotidine-5'-phosphate decarboxylase 11 5 Op 2 . + CDS 8141 - 8764 984 ## COG0461 Orotate phosphoribosyltransferase + Prom 8789 - 8848 5.3 12 6 Tu 1 . + CDS 8891 - 9814 1548 ## COG0760 Parvulin-like peptidyl-prolyl isomerase + Term 9829 - 9889 16.2 - Term 9829 - 9864 7.1 13 7 Op 1 5/0.333 - CDS 9896 - 10294 265 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase 14 7 Op 2 7/0.000 - CDS 10302 - 10772 86 ## COG0082 Chorismate synthase 15 7 Op 3 . - CDS 10652 - 11020 172 ## COG0703 Shikimate kinase - Prom 11048 - 11107 4.2 Predicted protein(s) >gi|300497581|gb|AEAT01000018.1| GENE 1 50 - 1369 2072 439 aa, chain - ## HITS:1 COG:BH3248 KEGG:ns NR:ns ## COG: BH3248 COG0773 # Protein_GI_number: 15615810 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Bacillus halodurans # 10 437 6 431 433 448 52.0 1e-126 MLDKTKQIWFIGIKGTGMASLALILHDLGYKVAGSDIDKYTFTQDPLEAAGIEVASFSKD NIKGSGQVIVKGNAFKSDNIEVVACEEKGVAWQSYPDTVEEIVQQYTSIGVAGSHGKTST TGLLATVLGEAAPTSFLIGDGMGKGVKDSRFFVYEADEYRRHFLAYHPDYQIMTNVDFDH PDYFKDRDDYASAFQTAADQTKKGLFVWGDDERLQKIQPKTAKKYTYGLKDSDDFQAFDV VKTTEGAKFHVRANGEDLGEFSIHLFGDHNVMNATAVIAIAFTEGIDLDVVRKGLVKYTG AKRRFSEKDFGDTVVIDDYAHHPTELRATIQAARQKFPDRKLVTIFQPHTYSRTKEFEEE YVEILKGVDKAFLTPIYGSAREAAGDIKSEDITSQIPGAEVIDFDNLKDLLAYKGDCIVF MGAGDIPKYEVAFEEMLEK >gi|300497581|gb|AEAT01000018.1| GENE 2 1488 - 2135 856 215 aa, chain - ## HITS:1 COG:L195751 KEGG:ns NR:ns ## COG: L195751 COG0073 # Protein_GI_number: 15672372 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Lactococcus lactis # 1 200 1 201 208 152 44.0 4e-37 MITSINKVSYPNTLIVILAQGDGESNFEEKADVTRVTDGKGELTGFNFFNVDQVLDYDKL PNGEVKLDEDQVAALNEKLASVGFSDKLTVAKPTLVYGYVKECTAHPDSDHLHVTQIDVG DGQDHQIVCGAPNIAQGQKVVVALPGTLMPTGAQIWPGALRGVESDGMICSARELGLAHA PQKRGIMVVPDSFKIGDEFEPTKCDELLASGAITL >gi|300497581|gb|AEAT01000018.1| GENE 3 2158 - 2478 297 106 aa, chain - ## HITS:1 COG:lin1650 KEGG:ns NR:ns ## COG: lin1650 COG0526 # Protein_GI_number: 16800718 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 11 105 9 103 103 103 48.0 8e-23 MEEYKVVDQAKLADLVKSGRTVVEFSADWCSDCRFLEPAMPAIEADFADSKFIKIDRDGS IDLCKEMSIMGIPSFVVYQDGREIGRLVNGDRKTKQEVEAFLRSLD >gi|300497581|gb|AEAT01000018.1| GENE 4 2557 - 3213 1241 218 aa, chain - ## HITS:1 COG:L156302 KEGG:ns NR:ns ## COG: L156302 COG0220 # Protein_GI_number: 15672731 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Lactococcus lactis # 1 218 1 216 217 211 49.0 1e-54 MRLKNKPWANKLVEEHPESALDWPDPAEKIDWAARFGNDKPIEIEVGSGKGQFITTLAKQ HPDRNFVAMEIQKTAAGIILKKKLDEGLDNLQILCADAANLVAYFGENSTSKIYLNFSDP WPKSRHEKRRLTYKDFLAKYQAVLTGDGLIEFKTDNSGLFAYSVKSMNNYGMRFDFVSVD LHHEKEEIVEKNVETEYEHKFASKGQPIYCLHAGFLTK >gi|300497581|gb|AEAT01000018.1| GENE 5 3289 - 4506 1413 405 aa, chain - ## HITS:1 COG:lin2317 KEGG:ns NR:ns ## COG: lin2317 COG4473 # Protein_GI_number: 16801381 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Listeria innocua # 2 363 8 372 407 124 27.0 3e-28 MRELAKKRLQGNFQQSAKYLALVFNDFFVLALIFIFGAVMFWYAQVMKVLPVKAWYYPLV LSALLWLAYLPGKLVTLLQTADRQFLLATDDRLDDYLAPMRRYSLVLPALLLALAGGIMY PFASLKMGLSNLNYFSLVLALFFAKVFEQGAVSRSLTFDHRVKQVTWLIRLVLLALLLAS LYFLPNALYLLLALAVIAVLALRAWKNSAFDWQYAIDYEARRKETVYAGFALFTDVKERQ VNIKRRKYLDFLLPPFGKESPNSFLYRRTLLRDPEYLNLLARMTAFAVLLTAMIQDPVWS LLLSALVMYLTVWQLLPLGQKYDQNIMYRVYPIAQKERGQEVSRVLAWALLLQTGLIIIF WLAIMPGQFAWSLLLLVWCGLLAKGYLPYKTQQLAKKSRYKKRKK >gi|300497581|gb|AEAT01000018.1| GENE 6 4499 - 5260 260 253 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 10 238 9 243 309 104 30 2e-22 MKKDRENMTLEISHLTGGYSGIPVIKDVNLTIASGEAIGLIGLNGAGKSTTIKHLLGLLR PQAGKITLNGINLAEKSAEFKKLVAYIPETPVIYPELTLKEHLELTILAYQLDPDKAWEK AKELLTMFRLADKLDWLPVHFSKGMQQKVMIVAAFLTDAQLLVIDEPFTGLDPLAVANFI GLIKEAQESGKEILMTTHVLADAQKAIKTYAILNQGTIEFTGSLDEIRDHYGLEASDSFD KLYQLLYQEQKNA >gi|300497581|gb|AEAT01000018.1| GENE 7 5342 - 5779 762 145 aa, chain + ## HITS:1 COG:lin2319 KEGG:ns NR:ns ## COG: lin2319 COG0537 # Protein_GI_number: 16801383 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Listeria innocua # 7 144 1 138 140 143 48.0 1e-34 MTKAELIDDCLFCKIIRGEIPSYTVFENDDVKAFLDISQVNEGHVLMVPKKHLTNFFDYS AEDASRFMQYVPEISKAIKASDPRIQAMNITSNNGEIAGQVVMHSHIHFIPRWEGDGIKF FTRNNADQYDEKKYQEVCDRIKAQF >gi|300497581|gb|AEAT01000018.1| GENE 8 5796 - 6146 591 116 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1464 NR:ns ## KEGG: LDBND_1464 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 116 1 116 116 154 99.0 1e-36 MRNFKHFGLGFLLGAAAGAVFAFLPDENGKSTREYLKEDAEDFKESHKELQDGLSRAQEA GSRLASELPAAEQMVSDLNTDVERFKQEADKEIARLQAKIDRLSSELNQDLNESEN >gi|300497581|gb|AEAT01000018.1| GENE 9 6226 - 7155 1350 309 aa, chain - ## HITS:1 COG:BS_pyrD KEGG:ns NR:ns ## COG: BS_pyrD COG0167 # Protein_GI_number: 16078618 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Bacillus subtilis # 7 309 2 305 311 287 51.0 2e-77 MTAEVNLAVELPGLKLKNPVMPASGTFAFGDLPENFNWDEMGAIVLKTATRHARTGNPQP QIALLADGVMNAVGLTNPGAEVVASEKIPALREKHPDLPILASVGGESVEDYVEVAKILA AAKPDALELNLSCPNVSEGGMTFGIVPEMVEKITRLVKEKVDLPVYVKLTPNVTSIVEIA QAAERGGADGLTLINTLLGLHLDLKTRRPVLGNDFGGLSGQAVKPVAVRMVAQVKQATSL PIIGVGGINSPEDAAEFILAGASAVQIGSMAFHDKLAIKHVIDGLPAVLADMGASDVTSL VGQWQSNKQ >gi|300497581|gb|AEAT01000018.1| GENE 10 7429 - 8151 1058 240 aa, chain + ## HITS:1 COG:L181692 KEGG:ns NR:ns ## COG: L181692 COG0284 # Protein_GI_number: 15673327 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Lactococcus lactis # 2 236 4 237 237 220 48.0 2e-57 MNKPLFIALDYDDQEKMWLFLNQLKDKQGLHVKLGMEMFYQYGPEIVRDLSAKGYQIFLD LKLHDIPNTVKRTAYQLAALGVYCTTVHALGGKQMIQAAKEGLIEGTPAGKPVPKLLAVT ELTSISEEVLKNEQHCSLNLADEVKSLAHQAQEAGADGIICSPLEVKAMKSEFSDDFMFV TPGIRPKSYQKDDQARVATPGQARENGSTAIVVGRPITQAADPQKAYEEILKDWSKNDAK >gi|300497581|gb|AEAT01000018.1| GENE 11 8141 - 8764 984 207 aa, chain + ## HITS:1 COG:lin1945 KEGG:ns NR:ns ## COG: lin1945 COG0461 # Protein_GI_number: 16801011 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Listeria innocua # 5 207 6 209 209 192 48.0 3e-49 MQNNEIIRQLIDKKIVTISTDKDFVYASGMHSPIYTDLRQTISFPKLRQAIAENLAALIK QEFPEVTVIGGVATAGIPHAAWVAQVMNLPMVYVRSKPKDHGQGRQIEGRLSMDDHIVLI DDLISTGGSVLSAVQAVKDTGAHVDGISSIFTYLLPDANENFKKADAKFVPLLNYRELIE QEIAETVSEEQYKELLAWHQDPWNWKR >gi|300497581|gb|AEAT01000018.1| GENE 12 8891 - 9814 1548 307 aa, chain + ## HITS:1 COG:lin1482 KEGG:ns NR:ns ## COG: lin1482 COG0760 # Protein_GI_number: 16800550 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Listeria innocua # 28 285 24 275 294 137 40.0 2e-32 MKKHLKKIAVLAGAAAIGLSTAACSSSSATVVNYKGGKITQDEYYEAMKDTSAGQSTLVS LIIYRTLKAQYGDKVSSKKINAEYNKYKKQYGSNFSTVLSYSGLTTKSFKQNLATNLYSV AALKDLKKPTTTQEKNWWKSYHTKTTVQHIVVDKKSTAETVIKKLKSGTSFATLAKKYST DTATKKKAGKMAAFDSTDTNLSSTFKSAVWKLKEGEYTTTPVKTSSGYEVIKVLKTTEKG SYTKNKSFIDKQLYAKWAADSNTMTKIISKVLKKANVNIKDKDLKSKNLLANYLGTSSSS SSSSSSN >gi|300497581|gb|AEAT01000018.1| GENE 13 9896 - 10294 265 132 aa, chain - ## HITS:1 COG:lin2037 KEGG:ns NR:ns ## COG: lin2037 COG0128 # Protein_GI_number: 16801103 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Listeria innocua # 1 122 122 243 428 104 51.0 3e-23 MKRVSQPLAKFGAEIALSPAGTLPATVIGQKLHGAEIQLEVASAQVKSAAIFAALEAGSP STIIEKLPTRNHTEIMLRQFGADITTEADNLTIHVQPGQELLGQEVEVPGDMSSAAFWLT AGRLRKSWPRMS >gi|300497581|gb|AEAT01000018.1| GENE 14 10302 - 10772 86 156 aa, chain - ## HITS:1 COG:L0059 KEGG:ns NR:ns ## COG: L0059 COG0082 # Protein_GI_number: 15673734 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Lactococcus lactis # 1 107 128 234 388 92 42.0 2e-19 MERSSARETTLRVALGNIAQQFLRQLDIDLVAYVAQVGPVEADSEKPLDVSEIRQKIFQN DMHVIDQDKVEDLHQLISETKEKGDTLGGIIRLVATGLPAGLGKLRQLGHEIGRQACRGR CRGQCRGQFRHDESSFAGNFGRQLLCQSIDRGCFFK >gi|300497581|gb|AEAT01000018.1| GENE 15 10652 - 11020 172 122 aa, chain - ## HITS:1 COG:SA1368 KEGG:ns NR:ns ## COG: SA1368 COG0703 # Protein_GI_number: 15927118 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Staphylococcus aureus N315 # 3 79 8 84 174 70 46.0 7e-13 MRIVLVGFMACGKTTVGDWLAKKLNKLQIDLDQAIVEREKPTIPEIFAKFGEDHFRLCEH RALLANIGKDAVITTGTGICAMSWNGPQPGKLPCGWLWAISPSSFCGSWISTWWLMWRKS GQ Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:08:04 2011 Seq name: gi|300497511|gb|AEAT01000019.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00042, whole genome shotgun sequence Length of sequence - 74982 bp Number of predicted genes - 70, with homology - 68 Number of transcription units - 44, operones - 19 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 115 - 156 8.8 1 1 Op 1 8/0.000 - CDS 182 - 982 1196 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component 2 1 Op 2 9/0.000 - CDS 994 - 1794 1169 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component 3 1 Op 3 15/0.000 - CDS 1797 - 2567 371 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 4 1 Op 4 . - CDS 2685 - 3626 1142 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component - Term 3976 - 4017 8.1 5 2 Tu 1 . - CDS 4047 - 4520 773 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 4557 - 4616 7.6 + Prom 4627 - 4686 6.5 6 3 Tu 1 . + CDS 4718 - 5515 1142 ## COG2365 Protein tyrosine/serine phosphatase + Term 5568 - 5594 -1.0 - Term 5428 - 5464 1.3 7 4 Tu 1 . - CDS 5681 - 6988 660 ## COG0675 Transposase and inactivated derivatives - Prom 7008 - 7067 6.0 + Prom 6964 - 7023 6.6 8 5 Tu 1 . + CDS 7095 - 7550 360 ## COG1943 Transposase and inactivated derivatives - Term 7508 - 7545 -0.5 9 6 Tu 1 . - CDS 7592 - 8071 311 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) - Prom 8104 - 8163 4.8 + Prom 8063 - 8122 6.4 10 7 Tu 1 . + CDS 8244 - 8717 830 ## LDBND_0178 nucleotide deoxyribosyltransferase + Term 8740 - 8782 4.2 - Term 8727 - 8769 7.2 11 8 Op 1 . - CDS 8781 - 10067 1286 ## EUBELI_00658 hypothetical protein 12 8 Op 2 . - CDS 10081 - 10800 533 ## COG3279 Response regulator of the LytR/AlgR family 13 8 Op 3 . - CDS 10808 - 11950 427 ## gi|300811491|ref|ZP_07091985.1| putative membrane protein - Term 12089 - 12126 1.3 14 9 Op 1 . - CDS 12319 - 12981 184 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 15 9 Op 2 . - CDS 13015 - 13470 288 ## GWCH70_2302 hypothetical protein - Prom 13496 - 13555 3.0 16 10 Op 1 . - CDS 13608 - 14063 -147 ## 17 10 Op 2 . - CDS 14065 - 14940 543 ## LDBND_0118 hypothetical protein - Prom 14966 - 15025 2.8 - Term 15035 - 15073 6.0 18 11 Tu 1 . - CDS 15078 - 16226 1478 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase - Prom 16253 - 16312 3.4 + Prom 16684 - 16743 9.1 19 12 Tu 1 . + CDS 16773 - 19778 3731 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases + Term 19812 - 19855 8.3 - Term 19798 - 19843 7.1 20 13 Op 1 20/0.000 - CDS 19930 - 20787 1105 ## COG3833 ABC-type maltose transport systems, permease component 21 13 Op 2 19/0.000 - CDS 20790 - 22148 1782 ## COG1175 ABC-type sugar transport systems, permease components 22 13 Op 3 1/0.125 - CDS 22202 - 23419 1962 ## COG2182 Maltose-binding periplasmic proteins/domains - Prom 23442 - 23501 2.5 23 14 Op 1 3/0.125 - CDS 23529 - 24635 1786 ## COG3839 ABC-type sugar transport systems, ATPase components 24 14 Op 2 11/0.000 - CDS 24646 - 25311 966 ## COG0637 Predicted phosphatase/phosphohexomutase 25 14 Op 3 3/0.125 - CDS 25296 - 27572 3310 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) - Prom 27600 - 27659 6.1 26 15 Op 1 7/0.000 - CDS 27666 - 29369 2615 ## COG0366 Glycosidases 27 15 Op 2 3/0.125 - CDS 29431 - 31086 2099 ## COG0366 Glycosidases - Prom 31131 - 31190 3.6 - Term 31166 - 31199 3.1 28 16 Tu 1 . - CDS 31205 - 32110 1209 ## COG1609 Transcriptional regulators - Prom 32249 - 32308 5.1 29 17 Tu 1 . - CDS 32314 - 33930 2260 ## COG0366 Glycosidases - Prom 33986 - 34045 5.1 30 18 Tu 1 . - CDS 34263 - 35675 572 ## COG0675 Transposase and inactivated derivatives - Prom 35705 - 35764 6.9 + Prom 35661 - 35720 6.2 31 19 Tu 1 . + CDS 35742 - 36203 248 ## COG1943 Transposase and inactivated derivatives + Term 36208 - 36236 2.1 - Term 36270 - 36303 3.8 32 20 Op 1 . - CDS 36328 - 37194 1450 ## COG0657 Esterase/lipase 33 20 Op 2 3/0.125 - CDS 37160 - 37954 1139 ## COG5438 Predicted multitransmembrane protein 34 20 Op 3 . - CDS 37951 - 39060 1673 ## COG5438 Predicted multitransmembrane protein - Prom 39117 - 39176 6.6 - Term 39127 - 39157 3.0 35 21 Op 1 . - CDS 39195 - 39830 837 ## LDBND_0158 transcriptional regulator 36 21 Op 2 . - CDS 39879 - 40967 1871 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes - Prom 40987 - 41046 4.8 + Prom 41042 - 41101 5.0 37 22 Op 1 . + CDS 41121 - 42458 1942 ## LDBND_0156 hypothetical protein 38 22 Op 2 . + CDS 42496 - 43146 1064 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases + Term 43152 - 43198 13.4 - Term 43139 - 43185 13.4 39 23 Op 1 . - CDS 43186 - 44019 1208 ## Ldb0182 hypothetical protein 40 23 Op 2 . - CDS 44030 - 44710 912 ## LDBND_0153 transcriptional regulator (TetR family) - Prom 44808 - 44867 8.1 - Term 44837 - 44887 12.2 41 24 Op 1 . - CDS 44892 - 45893 1342 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 45924 - 45983 4.7 42 24 Op 2 1/0.125 - CDS 45987 - 46646 1080 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 43 24 Op 3 . - CDS 46630 - 47421 887 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 47576 - 47635 5.6 + Prom 47532 - 47591 3.7 44 25 Tu 1 . + CDS 47628 - 48584 1605 ## COG4086 Predicted secreted protein + Term 48631 - 48675 8.6 - Term 48614 - 48663 11.2 45 26 Tu 1 . - CDS 48672 - 49439 1099 ## COG0328 Ribonuclease HI - Prom 49517 - 49576 3.6 + Prom 49411 - 49470 5.9 46 27 Op 1 . + CDS 49598 - 50455 1159 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold 47 27 Op 2 . + CDS 50457 - 51920 1952 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes + Term 51956 - 51993 1.0 48 28 Tu 1 . - CDS 51972 - 52451 765 ## LDBND_0145 hypothetical protein - Prom 52486 - 52545 5.6 + Prom 52466 - 52525 5.8 49 29 Tu 1 . + CDS 52562 - 53260 1152 ## COG0846 NAD-dependent protein deacetylases, SIR2 family + Term 53391 - 53437 1.2 - Term 53453 - 53489 5.0 50 30 Op 1 . - CDS 53501 - 54916 1175 ## COG0471 Di- and tricarboxylate transporters 51 30 Op 2 . - CDS 54934 - 56718 1583 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 56870 - 56929 7.7 + Prom 57050 - 57109 1.9 52 31 Tu 1 . + CDS 57220 - 57804 255 ## COG0583 Transcriptional regulator + Term 57826 - 57869 7.8 - Term 57808 - 57863 15.4 53 32 Tu 1 . - CDS 57902 - 58273 399 ## COG3189 Uncharacterized conserved protein - Prom 58322 - 58381 5.2 + Prom 58244 - 58303 4.0 54 33 Tu 1 . + CDS 58356 - 58982 782 ## COG2094 3-methyladenine DNA glycosylase + Term 59189 - 59236 1.8 55 34 Op 1 16/0.000 + CDS 59371 - 60954 2681 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 56 34 Op 2 . + CDS 60958 - 61719 261 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Term 61726 - 61766 4.9 - Term 61720 - 61748 1.0 57 35 Tu 1 . - CDS 61767 - 62225 308 ## LDBND_0139 hypothetical protein - Prom 62263 - 62322 8.4 - Term 62358 - 62395 8.5 58 36 Tu 1 . - CDS 62426 - 63571 1808 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - Prom 63614 - 63673 9.0 - Term 63656 - 63705 2.2 59 37 Tu 1 . - CDS 63801 - 64712 1158 ## LDBND_0136 hypothetical protein - Prom 64753 - 64812 2.8 - Term 64776 - 64810 5.1 60 38 Tu 1 . - CDS 64834 - 64968 61 ## - Prom 65002 - 65061 5.5 + Prom 65301 - 65360 5.5 61 39 Tu 1 . + CDS 65561 - 66718 1840 ## COG0471 Di- and tricarboxylate transporters + Term 66740 - 66770 1.0 + Prom 66746 - 66805 6.0 62 40 Op 1 3/0.125 + CDS 66876 - 67430 1059 ## COG1704 Uncharacterized conserved protein 63 40 Op 2 . + CDS 67447 - 68346 1111 ## COG0501 Zn-dependent protease with chaperone function + Term 68359 - 68394 6.0 + Prom 68389 - 68448 8.1 64 41 Tu 1 . + CDS 68492 - 68677 169 ## LBUL_0135 XRE family transcriptional regulator 65 42 Op 1 . - CDS 68652 - 69170 407 ## LBUL_0130 ABC transporter permease 66 42 Op 2 . - CDS 69167 - 70114 564 ## COG4586 ABC-type uncharacterized transport system, ATPase component - Prom 70170 - 70229 3.6 - Term 70195 - 70230 7.1 67 43 Op 1 5/0.125 - CDS 70241 - 71089 1025 ## COG2207 AraC-type DNA-binding domain-containing proteins 68 43 Op 2 . - CDS 71150 - 72625 2198 ## COG0477 Permeases of the major facilitator superfamily + Prom 72735 - 72794 4.2 69 44 Op 1 . + CDS 72925 - 74280 171 ## PROTEIN SUPPORTED gi|145635097|ref|ZP_01790803.1| 50S ribosomal protein L25 70 44 Op 2 . + CDS 74290 - 74958 829 ## LDBND_0123 ABC cobalt transporter permease transporter Predicted protein(s) >gi|300497511|gb|AEAT01000019.1| GENE 1 182 - 982 1196 266 aa, chain - ## HITS:1 COG:BH0442 KEGG:ns NR:ns ## COG: BH0442 COG3639 # Protein_GI_number: 15613005 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Bacillus halodurans # 21 266 22 267 267 219 45.0 4e-57 MKKLPPKPVTAKSRAIKWGGWIISIAIIIWSCTGIDFGGIKPTAGQITGAIFNGLFHPDW SYVYNGSGEDLVSQLWQTLCIAFLGTFISAIISVPFAFWAANTRHKKFWVSESGKIVLTF IRSFPEIVLALMFIKAVGPGAPAGALALGLHSVGMLAMLFSEAIESLDDGPAEAITAAGG SKFNVAVFATMPDLMPAIVSNTLYRFDVSVRSASVLGLVGAGGIGYPLIIALNYRQWSRV GIILLGIIVMVVVIDWISGAIRKKLV >gi|300497511|gb|AEAT01000019.1| GENE 2 994 - 1794 1169 266 aa, chain - ## HITS:1 COG:SA0136 KEGG:ns NR:ns ## COG: SA0136 COG3639 # Protein_GI_number: 15925845 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Staphylococcus aureus N315 # 11 264 12 265 266 202 46.0 7e-52 MSATDRDMLKLPKKKFKMWNWVWVILMVLGLVLSVNNTQTSLPEFFANFDQFAEIFVQMA QPDWSYAGTAIPYLVETIKMAIISTVIGSLLAFVYSLLIARNIVHNRAVTGVLRFIMNII RTIPDLLLGSIFVAVVGIGPVAGILALTVFTFGVVVKLFYEAIETIDPGPSEAIKAVGGN GMNNIMFAVMPQILPYFISYALYAFEINVRASTILGYIGAGGIGLQLKNTLDMFNYNQTG MIILVVFLVVLVIDFVSTKAREALMR >gi|300497511|gb|AEAT01000019.1| GENE 3 1797 - 2567 371 256 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 6 245 1 229 245 147 38 2e-34 MAEQPMIEMKNVTKVYDNGTVGLKNINLKINKGEFVVIVGLSGAGKSTLLRAINRLHDIS EGDILIDGESITKAKSKNLRLMRRKIGMIFQSFNLVKRSSVLRNVLAGRLAYYPTWKTTF NLFTDEDKQRTYEALQSVGMAEKVYSRADELSGGQQQRVAIARVLTQRPEIILADEPTAS LDPKTSRQVMEDLKMLNEKFDMTVVANLHSIELAKEFGHRVIGVRAGEIVYDGKMEDTPQ SIFDNIYNGGKGKEED >gi|300497511|gb|AEAT01000019.1| GENE 4 2685 - 3626 1142 313 aa, chain - ## HITS:1 COG:SA0138 KEGG:ns NR:ns ## COG: SA0138 COG3221 # Protein_GI_number: 15925847 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 309 1 313 318 309 59.0 4e-84 MKKFKKALFGALTVAAAVLATACSSSKSSSSSKGYTPSKSHPLTIQFIPSQAASTLEAKA KPLEKILSKKLGVPVKISMSTDYNTVVEAMKSKKVDVGFLPPDGYVLAHKQKAADVLLQA LRYGVKQPGGKATNKLVKVYRSEILVKKGSKIKSWKDLKGKKIAVQNATSSAGYIFPIAE LKEKGLDLTKKGNANLVTVTGHDQAVLDVLNGDVDAAFTFEDARNTVLADQPNIMKKVVP IYFTKSIPNDTISVRSDMSSSFRKKLSKAFESLRKDKKSLKIIESIYSHEGYTPSKDSDF NIVRKYDKMAATK >gi|300497511|gb|AEAT01000019.1| GENE 5 4047 - 4520 773 157 aa, chain - ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 151 1 147 152 102 41.0 3e-22 MTEEKIKILVPVDGSESAERAFDKAVKIAANNGYHVDVLNVIDTRQFMGEMQDTLISGDT IYQMTQDSEEYLKSLKQWAHDNLAFDDIDYHIRYGSPKRIISYDFVKDHGNNLIVMGATG LNAVERMLMGSVTEYVNQHAMADVLIVRTDVNNMPAK >gi|300497511|gb|AEAT01000019.1| GENE 6 4718 - 5515 1142 265 aa, chain + ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 9 263 46 297 298 138 34.0 1e-32 MTSLKQQLLAVKGGRNFRELGGYQTVSGKKIKMHKLIRSGHLADLLKEDQEYLRHYGLKY DIDLRTSFERNKQPDRKIAGVEYFADPVFDEDLTNSTMSISDMARESQDPGWGYQRMLWA YKNMATGKNANKAYQHLFEVLLANEKDGESVLFHCTAGKDRTGFGAILILTALGVPMKTI EKDYLFTNEVIKDFVSQLLAKEKAAGADDSLLATFRDLQTVQPDYFKYLLNVINRDYGSI NAYLHQQIGLSNADLLDLRTIYLEK >gi|300497511|gb|AEAT01000019.1| GENE 7 5681 - 6988 660 435 aa, chain - ## HITS:1 COG:all7245 KEGG:ns NR:ns ## COG: all7245 COG0675 # Protein_GI_number: 17233261 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Nostoc sp. PCC 7120 # 20 420 6 368 407 171 30.0 2e-42 MARKQLMISMSDLPYHLGIKMRIYPSSQQKRIIAINCGVSRAVYNKLIAINSELLHLRKT GIYIQTVAERIETLELRKKKLSKYYSYMSVNDVDSLAVAQAKLNYNAAWNMFKKIHSSGV PKYHKKGVSDSYQTSCTYTTENKKKGNCTPFSGSVRFLDTKHVQLPKLGRIRISGSSYRK ILAHNPNFRIGTATIKYDTSGYYLSLQIGDVAPFIDPKPKTGKITGIDLNTDNFLTDSSG NVIDNPRYYRKSLKRLKSLQRRMSRRQVRAKKEGRKLAESRNYQKSRLQAARLHQHVKNQ REDFLQKLSTAYINNHDVVVLEDLRGKNLMKNHALAMSIADVGWYSFQRMLEYKADLYGK KYIEIDKRNTTQRCSNCGSIMGHNGYPKLTLKDREWDCPICKAHHIRDYNAAKNILEKGI AKLEEEEYSIIPYKS >gi|300497511|gb|AEAT01000019.1| GENE 8 7095 - 7550 360 151 aa, chain + ## HITS:1 COG:DR0667 KEGG:ns NR:ns ## COG: DR0667 COG1943 # Protein_GI_number: 15805694 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Deinococcus radiodurans # 14 136 16 136 140 111 43.0 6e-25 MTEKMKDAVYTKRYVYNCHYHLIWCTKYRNQIFTTSELASEMKELIIDTATSNDIQIEKL EVMPEHVHAMISFRPSKSISSVVKALKGHTGYVFLRDHPDVRKNKCWGGNLWSSSYYIGT VGNMSKDTIERYINDQIYNAKKDGKPYPSTH >gi|300497511|gb|AEAT01000019.1| GENE 9 7592 - 8071 311 159 aa, chain - ## HITS:1 COG:CAC2958 KEGG:ns NR:ns ## COG: CAC2958 COG1762 # Protein_GI_number: 15896211 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Clostridium acetobutylicum # 5 137 8 140 164 94 33.0 9e-20 MTEELLKAESCFVLRAEDRADMFAQVYKKLLEQGLVAAGFLDQVVDREEDFPTGLASCNL APGLPNLAFPHTEGCFVKQQRVVPIKLLAPVSFKSMVDPSRELPVGFCFMLLDQKADGQA ELLARTMTFLSQAEPADLSWIFAQTDPAGLYSALREEGF >gi|300497511|gb|AEAT01000019.1| GENE 10 8244 - 8717 830 157 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0178 NR:ns ## KEGG: LDBND_0178 # Name: not_defined # Def: nucleotide deoxyribosyltransferase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: Pyrimidine metabolism [PATH:lde00240] # 1 157 1 157 157 304 98.0 7e-82 MPKKTIYFGAGWFTDRQNKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLH DKVWATATYNNDLNGIKTNDVMLGVYIPDEEDVGLGMELGYALSQGKYVLLVIPDEDYGK PINLMSWGVSDNVIKMSQLKDFNFNKPRFDFYEGAVY >gi|300497511|gb|AEAT01000019.1| GENE 11 8781 - 10067 1286 428 aa, chain - ## HITS:1 COG:no KEGG:EUBELI_00658 NR:ns ## KEGG: EUBELI_00658 # Name: not_defined # Def: hypothetical protein # Organism: E.eligens # Pathway: not_defined # 209 401 204 401 415 91 28.0 8e-17 MNLFIDSVTLLNTAFILLQFSKLYLAFAYLFAEKIRPVWLLGIYVFGLAAYCLAGPQLGL LNEALVYALLALGRTLLGPLKEGDLSQLGSYAILSLLDLSLKQLIRRQEVGAADLVFEAA IALTFVYLFLAPKVKNVFDSWPDKDKWLLVFLEILALGAASLTAGRFQAYLRLQKQLPVL EACLAGAAVWLDMALLQGQFRVWKLKGEMSEQEQLLQAEENYYESLLAREKETKKFRHDA RQHLVSLQGLAHAGQYQELTAYIDDLVGSSQMTRRLIDTGNSGINAVISDLAARYPQVEI SWTGVIPGNLALRQLDLCIIAGNLLKNACQAASLAADHQVKAGLKFSGKTMLLTVLNQTE KKVKIGSERDNVVANGRVGIGLGKVKSFLEPYHGRLRLTFSPQALASGGGEFRAEVLVPN ALEAPREF >gi|300497511|gb|AEAT01000019.1| GENE 12 10081 - 10800 533 239 aa, chain - ## HITS:1 COG:CAC1581 KEGG:ns NR:ns ## COG: CAC1581 COG3279 # Protein_GI_number: 15894859 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Clostridium acetobutylicum # 7 207 2 206 234 81 25.0 1e-15 MKEELGLRIAVCDDEEKERASLRQLLVMELNAAHVDCYASGDDLLEAGKKYNLIFMDIEM PGTSGMETARRLRRDKRGDLLVFLTAYDRYMPSAFEVKAFRYLLKPWKKENIALVLRAAY QEILARQLLAVPLPDKAMTALPLNEIRLLESLGDQSCIYTADQKVISPEPLKYWEKQLDS ALFGRVSRQYIVAYQHISDLKHNQLYLAGLKQPILLPRRQVKAVEAAWLDYLRFYAQPL >gi|300497511|gb|AEAT01000019.1| GENE 13 10808 - 11950 427 380 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300811491|ref|ZP_07091985.1| ## NR: gi|300811491|ref|ZP_07091985.1| putative membrane protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] putative membrane protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 1 380 123 502 502 669 100.0 0 MKLPDKFCVSRGSVKKQGKIALRCLQVSALLLLAWSLPQAALLAKSAYENYQSKEKWQQV PAAVSFDDDGRLDQRDHYPAELALIKDEERQGNAVLSLIMDDQMQTSKAELGGYDHIVFV NDRALKLAGISHQDLKEVALADLPAESRNFLRRILPLNTAKRQTVPKGMHLLTSRKKLAA LNETQDFQICRKPLLIYSKRPSQIYDMHGFLYPALSTGNLFFIQSDKLIPALKRRGLTKI YSPEPFRLKQLAQSKLELAKLYLKSCLWQLLNCILLLFLLASILNYQAGAWVQLNRSKVF ALFTSGHKWRIIFTPAAVAAALALLVCFLVTAILLVLYAASPAGLLICQFSFILLYTLVY GKLLSKKSKTEVKRMIGRKG >gi|300497511|gb|AEAT01000019.1| GENE 14 12319 - 12981 184 220 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 204 9 194 311 75 26 8e-13 DVSSFYLGGYSAMRGISVYADQITAQAGDKLLFQDLSFQANGGQAVALIGQSGAGKTTLL NLLGLLSLPSKGKILINGENASSWPEGKRERFWREKAAFLYQDAGIINEESLLYNVSLTK VKKGQEQALHCLKILGLTQAYEKAAVLSGGEKRRLGLARLLYKQGQVVYADEPTASLDAA NRQLVTDLLLKQAQAGALVFIATHDEKLGQKCDARICLGE >gi|300497511|gb|AEAT01000019.1| GENE 15 13015 - 13470 288 151 aa, chain - ## HITS:1 COG:no KEGG:GWCH70_2302 NR:ns ## KEGG: GWCH70_2302 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_WCH70 # Pathway: not_defined # 60 151 36 123 123 79 49.0 6e-14 MKKKLLVSTVLVSVISFMSVSPAFAATAVDSDVIKENISVDNENWTQGMVEEQWTATHSS PLFPSLYLSIGKHVRYPAEGGKWTYGFWNAKVHSEYKVNKKHGSTVVYIDRKGKKHKQRS INTAAGKTSIAEVWAINLPKTIDRYYYRIVK >gi|300497511|gb|AEAT01000019.1| GENE 16 13608 - 14063 -147 151 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTKMKKRSFLLQNIVLVLMSVYSIMMSIVAINSNYYNGQELLSLAAYIPLLLFVLVDITA FFEEKIPFKWLFLLATLNLISVFSFTGAKITTFFSSPSLLSYLVNSVSVFCLYLLEKPAY FGNDTKANLRYICWSMPVLDLVINIFIICFD >gi|300497511|gb|AEAT01000019.1| GENE 17 14065 - 14940 543 291 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0118 NR:ns ## KEGG: LDBND_0118 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 6 291 3 292 292 206 44.0 9e-52 MRRKLKRNIVVVLGVLLLLQFKGTVKADVGTSNSDNEFVKAYSIGRSKGILTDDNMTESD FVNLCKNTVYPRYLKYSYEYPGMSFEDYLAEDNYEVPVQTTEDKPIVINHKSSTASTNKI SLLGVSANRDYKMKAGDILVCYGTSSSSNSIPNHVGHAAIASSSSHILEMPNIWSHATHV GKASWFAKHTKGKDYVAVYRVKKHPHYAEDAAGYAYHDMYINNNPKYLLSPNLYDRTTSY CSKYVYCAWYYGATKDSVKHYNTGHYVLPHSFIGNWKGSFVASYVYKVTEY >gi|300497511|gb|AEAT01000019.1| GENE 18 15078 - 16226 1478 382 aa, chain - ## HITS:1 COG:SP2056 KEGG:ns NR:ns ## COG: SP2056 COG1820 # Protein_GI_number: 15901876 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Streptococcus pneumoniae TIGR4 # 1 381 1 382 383 399 52.0 1e-111 MRYYIHADQFYLPNGREKGGYLEIVDGKFGTYLPEGSQVPDAVDYTGFSVAPGYVDTHIH GSVKEDVMKSDWEGINRLSEALLSAGVTSWLPTTVTASSEQLAEVCRMLAAHQGEESGAK MQGIHFEGPFFTGEHAGAENPKYMMDPSPAELDKWLEASKGMLKKISLAPERPGTPAFVS YAVSRGVKVALGHSSASYDQTKAAAQAGATIFTHTFNGMPDFSHNRPNIANAAMALENMD NELIADGHHVTPSAIKALLAAKDKDHIVLITDCMEAGMMPDGDYMLGELPVYVKDGMARL KKGDNLAGSVLQLKDGVKNLVDWGLAGKEEAVLMASYNPARSQGLLDKCGAIRPGLPADF LILKDDMSLVKTYLNGEIRWEE >gi|300497511|gb|AEAT01000019.1| GENE 19 16773 - 19778 3731 1001 aa, chain + ## HITS:1 COG:STM0041 KEGG:ns NR:ns ## COG: STM0041 COG1501 # Protein_GI_number: 16763431 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Salmonella typhimurium LT2 # 172 607 174 670 679 118 23.0 6e-26 MTADLQNSRHQLGRLVGVNKRENYYELHYTTGEIARVYLIANGIFRYWLDPSQEFAETDD MLVKDIEPDPQCFARATAHATSDMFIITTGSCKLIFQQKTGSFSIFDESVHRPRMVQASA LELSGKHSIEILKQGQNEYYYGGGVQNGHFSHKGEKITIKTDGITGADGVLAAVPFFWTN AGFAELRNTTATGHYDFGRQNSQLTILSHRTPVFDSYYIIGNSPQELLSSFYYLTGKPFM LPSYALSFGHLGNFLDGSWQEADGKGHEAVRFEDNRYYTRKTENSGHLPSLNGEKDYQFS ARAMLDRYQRWGFPLSWIIPNYESQAAAKPDDFAAFAGYVQSRNCHPGFWSEKGQPLAHH SEFAAVDDPSSNLTAVNSDLAKENPKAKPLTLVRDSLLPHQSQAALAFGDVSGDWSSIKT QISTLLGAGLSGLPFIGAAAGGKHGPENAQVAVRDLEWKTFTPLFFVIDDQSPLSKTPFT FNNKVSRIMKAYLGLREQLKPYLYALSRQAQDGLPLVRPLLMAFPHEQVGYGRDFADEFM LGDQLLVAPIVNGKSDNQGMSVRDRIYLPDKQTVWIDLFTGDRLMGGRVYNQRKYPLWQL PVFVRGGSIFDLGSRRFVLYPQGDATISTYSDNDQSDYKHNSAQTVIRTHVADSKLRVII EPTTGYYPNMAIKEQTFFYIYCDQHPDEIQLRAGDEEVVTLTEYGTPETLQRAKEGFYYD NKFCWPEGFKDLGATPRPALIIKLQERDIKQEKLEILVNNFRFANEQLVHQITDAALPLP GKVEVDRDKISAHSLTVKWAQRTPSVQIELNGLLYTGISGNIFTFTDLAANTGYRLRLRY EAGYKVSEWSDLLQVKTKRDPRDFIISNVKVTSSQESASGHQLKNLLDRRMATDWQSTGK PSEDQPLTLTFSFPDQTELNKLIYVPRASSRDGRPLRMRVEISTDGENFTSYGTDYQFNS DCKNKVIGLRGVSAKAVRLSILETTGDYAAASGIDFYRPLK >gi|300497511|gb|AEAT01000019.1| GENE 20 19930 - 20787 1105 285 aa, chain - ## HITS:1 COG:L128697 KEGG:ns NR:ns ## COG: L128697 COG3833 # Protein_GI_number: 15673667 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type maltose transport systems, permease component # Organism: Lactococcus lactis # 1 285 1 285 285 338 63.0 5e-93 MKSYSNQRKVSLFFRYLLLTILAILWLIPILWIVLASFSYNDTGFISTFFPEKWTFQNYI GIFTNSQFPYLHWIINTLLVAIISATLSTFIQITVAYVLSRLRFRLRKPFLQIALVLGMF PGFMSMIALYYILKGLNMLNLGGLILVYVGGAGLGFYVAKGFFDTIPRSLDEAAELDGAT KWQVFTKIGLPLSKPMIVYTALTTFMAPWVDFIFSGIILSTSGDPKTYTIAYGLYNMLSS SKGSATAYFAQFVAGCVVIAIPITILFIIMQKFYVSGITVGADKG >gi|300497511|gb|AEAT01000019.1| GENE 21 20790 - 22148 1782 452 aa, chain - ## HITS:1 COG:L128696 KEGG:ns NR:ns ## COG: L128696 COG1175 # Protein_GI_number: 15673666 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Lactococcus lactis # 1 452 1 452 452 518 61.0 1e-146 MFKRKGHVPPTASYKEVWSKGDAADKLSFFFMGASALKNKQWAKGLSLLISEIVFLVWFI FSGVSALSMLSNLGENKTKKVVFDQAQGVYVTKQPDNSVLILLFGIMALFLVIGFICLYV ANLRSTRANYIKKRDGKHIATNKEELASLLDSRLHAALMFIPMLGILFFTVLPTVFMISM AFTNYDRQHPIGFSWTGFQAFGNVLSGDLAGTFFPVLGWTLIWAVAATATTFLGGVLLAL LIESKGIKHRKVWRTIFIVVYAVPQFVSLLLIAQFLDAQGPLNTLLQNWGWISGPLHFID NEAAPWVARLTVIIVNMWIGIPVSMLVSMAIIQNLPQDQIEAARIDGANVFQIFHNITFP QILFVMGPSLIQQFIGNINNFNVIFLLTGGKPMNNNYNGAGSTDLLVNWLYNLTFGQQQR YNASAVLGILIFILSATISLIAYRHTTAFKEG >gi|300497511|gb|AEAT01000019.1| GENE 22 22202 - 23419 1962 405 aa, chain - ## HITS:1 COG:L128695 KEGG:ns NR:ns ## COG: L128695 COG2182 # Protein_GI_number: 15673665 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Lactococcus lactis # 1 404 1 407 410 328 49.0 1e-89 MSFFKKAALSSAAVLAALSLSACSKSSSSSSSTADKKASLTLWVDTEQVPYYKDIVKDFH KKYPNITVKVTQSPNGSANAKTDVGKDASKAADVFEVPNDQLGQMANAGYINPLSPSDTA NIKKNYVSQASKGVTWKGKVYAYPYAQQADTIYYNKSKLSANDVKDWDTLTSKGVLATDF TNAYTMWPIFFSAGTTLYGENGEDLKGSTFNSQNGVNALTWIAKQKSNKGVMQTSNALNQ LKKGNADAIMDGPWNAANIKKILGKNFAVAKYPTVTVGGKKKQLEAFLGIEGFAVNSHTS NAKAASQLGAYITNKKSQLIAHEKAGQIPVLKSAVNSSAVQNDPVAKSVIEMAQPGNSVL QPKLPQMATFWDGAAPLISGTYDGKIKPSQYKAQLAKFSKKISQK >gi|300497511|gb|AEAT01000019.1| GENE 23 23529 - 24635 1786 368 aa, chain - ## HITS:1 COG:SPy1976 KEGG:ns NR:ns ## COG: SPy1976 COG3839 # Protein_GI_number: 15675768 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 1 366 1 376 377 513 65.0 1e-145 MVKINLNHIYKKYPNADDYSVSDFDLHIGDHEFIVFVGPSGCGKSTTLRMVAGLEDITEG TLEIGGKVMNDVAPRDRHIAMVFQNYALYPHMTVYDNMAFSLKLRHYDKAEIDKRVKNAA EVLGLAHLLERRPADLSGGQRQRVALGRAIVRDAPIFLMDEPLSNLDAKLRVSMRAEIAK LHQNLKTTTIYVTHDQTEAMTLADRIVVMNAGRIQQIGTPKEVYNKPANQFVAGFIGSPQ MNFFNVTYKDGYIDDGQGIKLEVPEGRAKVLDAKGYNGKAIVMGLRPEDIHMEEAFLETW PEAVVSAKVVVSELLGATSQLYMNVDKTEFVGVVNARDFHKPGDSVKAGFNLNNAHFFDK ETQVTITD >gi|300497511|gb|AEAT01000019.1| GENE 24 24646 - 25311 966 221 aa, chain - ## HITS:1 COG:lin2964 KEGG:ns NR:ns ## COG: lin2964 COG0637 # Protein_GI_number: 16802022 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Listeria innocua # 2 214 5 215 220 185 49.0 5e-47 MLKGLIFDLDGVITDSAVYHLKAWQDLARGIGIELPEEFGDKLRGLSRMDSLEIILEYGH KENDYSQEEKEALAAKKNAAYVNAVKNMTRADILPKMDDLLKQAKAQGLKLALASASKNA PLILKQLGLTDMFDARVDPATLKHGKPDPEIYIRAQELLGLEKNEVISFEDAPAGVAAIK AAGQFAVGIGDPIVLKGADYIVGSTSALDLTEIEKVFEAGN >gi|300497511|gb|AEAT01000019.1| GENE 25 25296 - 27572 3310 758 aa, chain - ## HITS:1 COG:lin2226 KEGG:ns NR:ns ## COG: lin2226 COG1554 # Protein_GI_number: 16801291 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Listeria innocua # 2 749 4 746 753 855 56.0 0 MKRIFEIDPWKLTSHTFSKEDKRLQESMTSIGNEYMGLRGNFEEGYSGDSLQGTYYAGVW FPDKTRVGWWKNGYPDYFGKTLNAPSFIDLPVTINGHKLDLATDKISDFSLSLDMHQGLL TRSFIYEGKDCRVQFTFTRFLSSVIKEAALIKVKATVLSGEADLQIASHLNGNVVNEDSN YEEGFWDALNEDANGRSIQLRTKPNNFGTPQFTVLLKEVTREDGEVISGDVTTASGEVSE LFAKTLTSGQSWELEKDVIVITSRDVADEEQAAKADELMAKLTSKTFAQNLSDHEAVWDK RWASCDVTIDGDPAAQQGIRFNILQLFMTYYGRDPRLNIGPKGFTGEKYGGATYWDTEAF IVPMYLAVAPKEVTKSLLEYRHEQLPGAFHNARQQGLKGALFPMVTFNGIECHNEWEITF EEIHRNADIPFAIYQYTRYTGDDSYVKDEGMDVLVSTARFWADRVHFSKRKGQYMIHGVT GPNEYENNVNNNWFTNTMAKWLLGYTLERWPLATEAAKKRLQVTDEELAKWQDIVDRMYL PEDKELGIFVQHDTYLDKDLRSKDTIPADQLPLNQYWSWDKILRSPFIKQADVLQGIYFL NDHYTKEEKERNYDFYEPMTVHESSLSPSIHAILAAELGKQDKAVEFYERTARLDLDNYN NDTVDGLHITSMSGSWLAIVQGFAGMRYNEDGISFAPFLPKKWSSYSFKINYRGHILALA VEKDKEVKLTLLSGEDLPVKVWDQEVTLKEGQSQCLKD >gi|300497511|gb|AEAT01000019.1| GENE 26 27666 - 29369 2615 567 aa, chain - ## HITS:1 COG:L128694 KEGG:ns NR:ns ## COG: L128694 COG0366 # Protein_GI_number: 15673664 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 1 564 1 582 584 545 50.0 1e-154 MQTAAVRHRPESEDCYLVTTETMKLRLHTGRDVKAVYVHYCDVHEPLTNLKKQAMDLAGH GQVNDYWETTVTLPLHRAQYVFEIHGEDGEEWVYGDRGFRKNEKESYEDPNNYFKLPYFH AVDMTKSPDWVKETVWYQIFPERFANGDKSNDPEGVKDWNPSDHPGREDYYGGDLQGVLD HLDYLQDLGINGLYFCPIFKASSNHKYDTIDYLEIDPDFGDKQLFARLVNEAHARGMKVM LDAVFNHMGDSSMQWQDVVKNGPNSRFANWFHINRFPVEPYDPADPSYETFAFEKHMPKL NTANPEVVDYLLTIATYWVKEFDIDAWRLDVADEVDHQFWKKFKAAVTAIKPDFYVLGES WHSSQSWLNGDEFSGTMNYPFTGQIADHFLKGTQDAKTMTELLTDQLFLYREQSNSAMLN VLDSHDTARIKTVAGEDEDKALQALAFTFMQTGSPCIYYGTEMGMSGDNDPDCRKPMDWS QAGSPVWQAVQEIIAFRRQHWESLSKGQTWLEVEENGLIHVKRTGKETIEGWFNTTGQAV SLSAEATLSRGYEAGQLASKGYVLSVK >gi|300497511|gb|AEAT01000019.1| GENE 27 29431 - 31086 2099 551 aa, chain - ## HITS:1 COG:BH2903 KEGG:ns NR:ns ## COG: BH2903 COG0366 # Protein_GI_number: 15615466 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 7 521 5 523 561 356 36.0 5e-98 MTKQDAWQKNAIIYQIYPKSFQDSNGDGIGDLNGVRQRIPYLKQLGITAVWLNPIYQSPG IDNGYDVSDYYKIDPVMGTMADFEALVTDLHQAGIKLIMDFVLNHTSDQHPWFKAAVSDP ASPYRDYYIFAGKNGVRPNNWGSFFGGSCWAADPAGTGQSYFHLFAKEMPDLNWKNPAVR EEMFKAAEFWLKKGVDGLRLDAFIHIAKADLRQSYPSEDDKPVIAEDFFANRPEVQEWLA PFCARLREEFPDLLLLGEAASASINLAVDYTDPKRNLMDSVITFRYFTEKADSVNPAFSG QYQPKEFDWLAFKQNQTLWQQTLSAAPTLYWSNHDMARLATRVAKTPVQQRSLAMAMYLE RGIPVIYYGEELGLHNLEFDNADQFADETVADFVKEAGEAGVDEKTALEMASQTHKLPAR GPMPWDDSQYDGFSTAEPWLTGRSRDKVSVASEDADPASMLNFYRQLLKLKQTPLFTKGS YYLLDTKADLLVYQRDLGDDRALVVVSLSAKKEHLTLPEELTPVLTAGSINLQGKELTLM PFAGVVLQKKK >gi|300497511|gb|AEAT01000019.1| GENE 28 31205 - 32110 1209 301 aa, chain - ## HITS:1 COG:BS_yvdE KEGG:ns NR:ns ## COG: BS_yvdE COG1609 # Protein_GI_number: 16080516 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 300 16 315 316 277 47.0 2e-74 MTVSRVINHPELVASELQVVVEDAMHKLNYHPNNAARALAKNQTSVVKFVILEDVDDTDP YFTNVLFGMATELKKQNYSLQLLLKGSQLDQGAADGYVITGARTDDYPQLNELKQPFVLF GENRGGYDFVDTNNLLGETMATKYALKAGYRNVVFIGIDVREAFEFSREAGYVNTMQQNK KIPSVFRVENSLAAAREFIQDHLGEFPKNTCFACASDRIAMGVIQALVEVEAKIPEDFGV IGYDGVLLDRVSSPTITTVKQNLWLIGEKLAELILRKIAQNGAPQGEIFIEPTLSEAEST K >gi|300497511|gb|AEAT01000019.1| GENE 29 32314 - 33930 2260 538 aa, chain - ## HITS:1 COG:SP0342 KEGG:ns NR:ns ## COG: SP0342 COG0366 # Protein_GI_number: 15900272 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 6 532 2 530 535 651 60.0 0 MTAEKQEPWWKQAVIYQIYPKSFQDTNGDGVGDLRGIIKRLDYLQDLGIDAIWLCPVYKS PGVDNGYDIADYEAIDPQYGTMADMEELISEAKKRGIRIVMDLVVNHTSDQHPWFIEARK NPSSLEHDYYVWADKANELKSAFSGSAWEYDGQVGQYYLHLFAKEQPDLNWKNPALRQKV YDLMNFWIDKGIGGFRMDVIELIGKVPEEEITANGPKLHDYLQEMHRETFGDRDFLTVGE TWGATLDNAPLYSDPDRKELSMVFQFEFTELDKQAGKEKWDTKPLDYGDLKNVLAKWQKL DFNHSWNSLFWNNHDLPRIVSRFGNDQQYRERSAKMLALLLHGLRGTPYIYQGEEIGMTN CPVSAIDEVEDIEARRMYQERLAEGWKKEDLIKAINAQGRDNARTPMQWDASASAGFTSG RPWLAVNPNCQEINVKNALNDQDSIYYFYKKLIALRHQERILTDGSFELLDTADAVMAYH RENAEDKWLVVCNLTGKEQEVSLPDKVKEVLLANGPVPEDLSAAVLPAYAAFLCRVKK >gi|300497511|gb|AEAT01000019.1| GENE 30 34263 - 35675 572 470 aa, chain - ## HITS:1 COG:jhp0826 KEGG:ns NR:ns ## COG: jhp0826 COG0675 # Protein_GI_number: 15611893 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Helicobacter pylori J99 # 263 443 236 423 442 77 30.0 7e-14 MSNEEKYGFTRQYHVLLTDKQKIQHEKALKTQNALFQYALKYLFKTYGVKHIGRPMPFSQ KPIQYVLNKIKTGFIKDKYGLARWKKSVLFLSSHSADEFLKTVYTNFSQYRKRLVKADKS MDEKARYNFKMNVTKDKYGKHKNQLHKSWYRKGSINFLRNSASFRTITSQKLPEDSKGGI RIEDKHTDNHTFLTVADFGTVEVIEDLSELNLKDIALTKIKKLPDGSYRLQLTFSLPRKK QKSKTIQGFDWNMAGNEAFCSSDGKRIKVSDAAIKRADEYEQKINAIKSARDLEGNAHGQ SKLYRKLDRRQQKLNAKRSNMLTNEYRHLVHEVVDDCDTIVVEKLDAYEMRKRGKGSAQR KGINRRLAVLKPYELMTILESLVKKQNKRFVKVDSFWTSKACHDCGYINKDLKVGQKEWQ CPSCKKTVDRDLNAARNILDWGIHPEHHAKLKKTAEEGKNLSPSSLVTEV >gi|300497511|gb|AEAT01000019.1| GENE 31 35742 - 36203 248 153 aa, chain + ## HITS:1 COG:DR0667 KEGG:ns NR:ns ## COG: DR0667 COG1943 # Protein_GI_number: 15805694 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Deinococcus radiodurans # 6 130 14 137 140 108 41.0 4e-24 MIVHERGCVYNFNFHLVFVTKYRKEVFDSPEKVEEMKGLLQKRADMSDIQIQEMEVMPDH VHMLISFSPKQRPVDVVKGLKGWTARKWFELHPETKQMLWGGHLWSPSYFMSTLGDMSKE VVKNYIASQYTAAMKKQQNGKYGELERKRRKRN >gi|300497511|gb|AEAT01000019.1| GENE 32 36328 - 37194 1450 288 aa, chain - ## HITS:1 COG:CAC2917 KEGG:ns NR:ns ## COG: CAC2917 COG0657 # Protein_GI_number: 15896170 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Clostridium acetobutylicum # 17 271 25 270 272 139 34.0 4e-33 METKKLEIKNFNGRTYQLQTYTVKSGHAPLNKLRPLAIVVPGGSFTHLSVKEGEPVALAY VSRGFNACVVSYNLLQDEGMIYPDAGLDVLSTVNYYRERAAEYQIDPNKIMTIGFSAGGH IVSAANYLADEAEYQESYGYEGDQVRPNATILGYPLTDVHKVAFEIGGRADGALPPDPKL VDTALGVSPKTPPTFIFQSWNDPICLPTNAMAYEEALFKNKVKCEAHMFDIGYHGYSLAT PELSTEDIFWQGNPHTARWFNLSLEWLDHLFSGINYDENKDKLTQLYQ >gi|300497511|gb|AEAT01000019.1| GENE 33 37160 - 37954 1139 264 aa, chain - ## HITS:1 COG:L17781 KEGG:ns NR:ns ## COG: L17781 COG5438 # Protein_GI_number: 15672790 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Lactococcus lactis # 23 250 23 250 253 102 27.0 1e-21 MSSLGALIIVLAILMTIIGGETGIRSFFSVLINSLLLVLVAMLISWGLSIPIITSIFVPL KLATIIFLGTHDYTVAKNSFYASLIVLSLVSVLILGIQYLAQAAGLGPEAGEILLGHSQM PGISYGQIAVTVAIFSALGAVAEAAVSMSSGILELKKAKPDITEEQLMKSGAAIGYDVLG TAMNTIIYGMFGSFLSLFLWYYRLHYSFSEVINDKLFVNEALIIMYSLLGVLLTVPLATF LLAKGMSRQSEAKNGNEKTRDQEL >gi|300497511|gb|AEAT01000019.1| GENE 34 37951 - 39060 1673 369 aa, chain - ## HITS:1 COG:SA0428 KEGG:ns NR:ns ## COG: SA0428 COG5438 # Protein_GI_number: 15926147 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Staphylococcus aureus N315 # 3 348 8 352 370 147 28.0 3e-35 METKKQRILAALVLLALGLGLAALTYFKTTGYKNPVAVITDTKIKDRLLKKETDIYGNKD EERRQYLHVQVLTGKYKGQTFETVNTYYPSQLVTQKYRAGERVFVTVTDGSLALVSPKRD WILVMTLAITLALMVAVVGRRSWHLIVSMAISWILFYCLILWDVAVNGAGIIWMFSLADI VFSFFSLAIVQGVNKKMLVTWLATLLGVFVSFALCYAVIKLTGETYLNYEMGDYATQDTR GIFMAQALLGVLGAVMDEATDIISSLYELIQHKPEITVKELLASGRTMGQEIMGPLINVL VLIFISEALPETILYFRDNNTIATTFNFTMSLGATQSAVSAIGIVLTIVFASLCSLLFLK KPQKGGKQE >gi|300497511|gb|AEAT01000019.1| GENE 35 39195 - 39830 837 211 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0158 NR:ns ## KEGG: LDBND_0158 # Name: not_defined # Def: transcriptional regulator # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 211 1 211 211 280 97.0 4e-74 MSEKSEQMKTSEAAQALGVSENTLRKYSQAVEKAASPAYFPRVKNTRRYRPEDLTVLKQM QDLVKAGQKVDQAAQELFAGEKEEAPVKTAREDQLEAALAAKDQEIAELKEQLAQLTAAK AAEKPEAALEPAADVLDLPDFDDGFLEDEPVTPEQKRAQVVADMAKSDQEVHKELLSRAQ ENAAKGAPTYRTLADMQLAPKKTPWWKKIFK >gi|300497511|gb|AEAT01000019.1| GENE 36 39879 - 40967 1871 362 aa, chain - ## HITS:1 COG:STM0380 KEGG:ns NR:ns ## COG: STM0380 COG1181 # Protein_GI_number: 16763760 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Salmonella typhimurium LT2 # 4 357 3 360 364 294 43.0 2e-79 MTKKTQVGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVL EEPGYMVEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVD VLAAAVTMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVK PSNQGSSVGITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVG RIINADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQVTECSGMARVDSM LRESDGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLAEERYAHKKTLLHK HD >gi|300497511|gb|AEAT01000019.1| GENE 37 41121 - 42458 1942 445 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0156 NR:ns ## KEGG: LDBND_0156 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 378 3 380 435 575 99.0 1e-162 MRHKPALLLLPAILLAVGSTAVQAAEFTPQEQAEVLRFQREYQALSKTVYTQQNIYASKP SLKKKFKAGSLKSSYINEQVAYINYYRDLFGLTAVKTTSHGNKNAQTTAAVMAAINANPF VNQHGLPNEKRPSYISKKNWLLAQDVSNSANLNFNASPQTAGDVVTDLLTDRYNLSGSDT GHRAWLLSTRLSKVSVGAAYGTNGYRYSVNQVLNVGDSARTASREMVAYPNAGVFPLELL NGQNIAWSLYFSNKVVTSTPKITVADDDTGKTVTASQVANYSEYGFGNFQTVITYYPSKL QLTAGHKYTVRAGNLATYSFKLFKQSSSQTYSSKVSSSSTQSKNKVSQKDLQNKGLAKYL YKVGKNISTVKSKKITNAKAVKKTSKTKKTSKKTSKKSSKKSSKKSAKKSSKKSRKKSSK KAKAKSKKTSKKAAKKSNKKSSKKK >gi|300497511|gb|AEAT01000019.1| GENE 38 42496 - 43146 1064 216 aa, chain + ## HITS:1 COG:L0239 KEGG:ns NR:ns ## COG: L0239 COG0664 # Protein_GI_number: 15673985 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Lactococcus lactis # 5 215 4 212 222 90 31.0 2e-18 MHQHDELNCISHVPIFKNLPLDLRQDLVHISTHQQFFKKGSLIHAPGDGRLSVMSLDSGR AKVYSLSPDGHEQVLSLMQEGDINGEENLFDTENDDLFIEALEDSTACSINYSDFQDLLL KSPELSLHLLNEFGQRLVSAQKNAMRRNSLEAGPRLYASLKDYADEAGSATFTLPLKKKD LASLLGITPETLSREFSKLKKDGYIAAKGKQITILK >gi|300497511|gb|AEAT01000019.1| GENE 39 43186 - 44019 1208 277 aa, chain - ## HITS:1 COG:no KEGG:Ldb0182 NR:ns ## KEGG: Ldb0182 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 277 1 277 277 490 98.0 1e-137 MAESSGTHRRRNNYEIVDNALEYKRPLAFIAFLLLSLLLATGTFLNPAFMKETIKTDSNT VVISQQVNSDFNRLATIVNGSSDEKNLISDDQAREVADLIIDYKYGWHFIHTSNLDLAKD IKAVILKREQTDTDQVTAIRKKLKKQSDSSVYIVSNAFDLATVMLEANLITIIRIVNLLV ILLCLVAVVSILREAFASHTKRAVVHDMTAGLMWTAFWFILVYGLLAMVPIFMDTSVITV ADLGYWLEIASGVFLDFVIAGVILYVVSAIPWQATSR >gi|300497511|gb|AEAT01000019.1| GENE 40 44030 - 44710 912 226 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0153 NR:ns ## KEGG: LDBND_0153 # Name: not_defined # Def: transcriptional regulator (TetR family) # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 226 1 226 226 446 99.0 1e-124 MARRKNMQRRREILDNTFRLIRANGFDHVSLQMIAENSGISKSLLQSYYPHKARLMTDIV RNLFNTMWDQVEINYHAPKKNPFTRVDALIYTIATLGMTDKGLDRVITEAFTDQTSLDNW SRMLDEWMKSHNAFSEYSNYQEIRAGIAFIITGVGRLYRDREKHGLNAEQMADYSTSSLM YGFLHADPAEIDAVLEEGHGIIDDSNIGEVHHAIDTMFDEGKVIYS >gi|300497511|gb|AEAT01000019.1| GENE 41 44892 - 45893 1342 333 aa, chain - ## HITS:1 COG:BS_prs KEGG:ns NR:ns ## COG: BS_prs COG0462 # Protein_GI_number: 16077119 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Bacillus subtilis # 16 324 10 316 317 281 45.0 1e-75 MTSITKEEIHKLLNPMKVIGLGGNPQLNEKVASTLGVPLIETTVHHFSDGEIQVNIAESV RGCDVFVIQSIQDPVNENFMELEIVLDALHRASAHTVNCVIPYLAYSRSDTKTRSREPIT AKLIANLLQLTGIDRVLTIDLHASQIQGFYNVPVDHLHAMPLLAQYFLDNGIAVKDDDDV VVVSPDHSGTKLARVFGQYFNAPIAIVDQRGARYDDSVHGMIGDVKGKKCIIVDDLIDTG TRLASSTRSVFAAGATKVYAAATHALLSQDAIKILNGLPLEQIVVTDTIKHEKYPDRMVR ISVDRLLAKGIDHIYNDRSIHDIFDEQNRFTKD >gi|300497511|gb|AEAT01000019.1| GENE 42 45987 - 46646 1080 219 aa, chain - ## HITS:1 COG:STM3079 KEGG:ns NR:ns ## COG: STM3079 COG0596 # Protein_GI_number: 16766380 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Salmonella typhimurium LT2 # 3 199 54 290 318 94 28.0 1e-19 MIIKVNGVDLYYQKLGQGQPLILLHGHHLDGGMYSKVIAPLSLYYTVYTLDMRGHGLSGG DGAEHYQTEVEDLAVFIKELGLEQPYVFGYDSGGLVTLMLASQQPDILGKAVVAGVFIDG RGIHKYHYLTEGVRRFLRFDRDSRVELTESYMEPESLEQIQIPVLCVVGENDWVKVEHVR WYSSLIPNGRLALMPRQTHDSYVVDSLKILDLIKDFCKE >gi|300497511|gb|AEAT01000019.1| GENE 43 46630 - 47421 887 263 aa, chain - ## HITS:1 COG:BS_yveR KEGG:ns NR:ns ## COG: BS_yveR COG0463 # Protein_GI_number: 16080483 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 1 203 10 211 344 101 28.0 1e-21 MTVYNQEKYLARALDYLLEQKNQQFKLLVIDDGSTDSTAEIAASYQDRFQAFDLVSKANE GVAAARNLGLDMVDTPYFIFHDGDDWVEPDYTDYFIKAFDRHPDDDMVTCGYYVDQAGKP SVPITKPVEGELTRLEAVLKVLGSAHSPVKGYTWNKCYKTQLVRCLHLRFNEDLDLMEDQ VFNIDYLMQTEGCYYSSVPLYHYWQRTDSAVHTVSWDHFWSIVGANISIYKSIFSHLWQK VLSKRPQTQEYYVRERIKDDHQS >gi|300497511|gb|AEAT01000019.1| GENE 44 47628 - 48584 1605 318 aa, chain + ## HITS:1 COG:SP1027 KEGG:ns NR:ns ## COG: SP1027 COG4086 # Protein_GI_number: 15900898 # Func_class: S Function unknown # Function: Predicted secreted protein # Organism: Streptococcus pneumoniae TIGR4 # 6 314 3 324 324 116 33.0 5e-26 MNTKIKKIITACALFLGLGLTAGRVSAAEDTTPVITLGTSLTANQKQGTLDVLKGALSDS SSYNTLTVTGSDLVTYLNPSGSSFTSSSGVWSSAAIEKTSSGSGINVRILNYNGQNNITT ITANQYRNAAVTAGITDANIYVTSAIPIDGSGALAGIYKAYAKSGEKLNQKQITAAQDEL NTLSGITKENKGKDGYSDAQLNNAVAGAKKEMAQKGSNITKNQIITIVNNQIENNNLTNV ITNEQKQQIVNILVEIRDSGALNSSSFKQQASQAMSAIQKSSKGIFAKLNTSENRNALQK LWDAIVNFFTSLFSSFSK >gi|300497511|gb|AEAT01000019.1| GENE 45 48672 - 49439 1099 255 aa, chain - ## HITS:1 COG:DR0899 KEGG:ns NR:ns ## COG: DR0899 COG0328 # Protein_GI_number: 15805924 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Deinococcus radiodurans # 97 247 39 169 179 93 37.0 5e-19 MKVYVVKKGYRPGIYHSWPEAEEQVKGFPGAEYKSFSNIMEALDYQQMDPEDALKALQGA EDKLQAAIAKVRQGGSKKKQAENKKEFAASSKYAAHIFTDGGCRNNGTHKGGHVQADDKA AWAYLIEYGGQKLSASGGRFGATNNEMEMTAFLESLKKLEELGLNDQPLLFSLDSQYVIK AVSDNDQGPAWIKGWQRRGWKKADGSPVANRELWQEIAKEMAKFAKPEFEWVKGHANSAG NNFVDGLLNKYMDQM >gi|300497511|gb|AEAT01000019.1| GENE 46 49598 - 50455 1159 285 aa, chain + ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 39 276 46 286 289 114 30.0 2e-25 MMFFLGILATFPPFRIFLKLRGKRVSDLAENQASGSDQVPIIYVHGFRGGDYTTRVMVED ALKQKGDTRFLKVEADLTGRIKLTGCYTGDKQPIIQLAFKDRIAGYQAINYYLSFILPFL SKKYVFTRYSAVAHSLGSPCVVATEMRYAKRKNFPHLASCALIAGPFNGVMYLGDIPNVN RLTESGRPSMMTPHYSYMLRHRRDFSPSIRVLNIYGNVLDTTNSDRFISVVSAKSIRYIL APDAVYYQEVEVRGDNAEHSQMHDEPFVIGILNRFLGLDKIKKGL >gi|300497511|gb|AEAT01000019.1| GENE 47 50457 - 51920 1952 487 aa, chain + ## HITS:1 COG:L186875 KEGG:ns NR:ns ## COG: L186875 COG1502 # Protein_GI_number: 15673156 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Lactococcus lactis # 17 487 22 487 487 479 49.0 1e-135 MTAISWIDIWHIIFFANAILALWTVFHRKRSVATSWAWLIVLIILPVVGFIIYGFVGRGI SQENLFAINRQKHIGLSNVQKMITEAPAKIGQNDTSPSAHILIKYLDKDQESPITKNNKL KLYTDGHDKFRDLFADIRQAKSSINVEYYTIYNDAIGNEFLKLLIQKAKEGVQVRVLYDA WGSFGASKSWFNQLTEAGGDVSPFITSRNMISRNRINYHLHRKIVVIDGVTSWTGGFNVG DQYLGSKKKFGYWRDTHLRLVGSASLLLQERFVMDWNASAVKEEELISFDEKLFPDLDEN DISKGDMAVQVVSDGPDNDEPYMRNGLVRLMMLARKRVWIQTPYLIPDEAMIAAWQILAS SGVDLRIMIPCMPDHPFIYRATQWYANQLVKIGVKVYTYNNGFMHAKTIIVDDKYATVGS VNQDYRSYDLNFEDNVFVYDRAFNKEMSDQFEKDMEQSTLLTPEMIKKQSRWLRFLQNFS RLLSPIL >gi|300497511|gb|AEAT01000019.1| GENE 48 51972 - 52451 765 159 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0145 NR:ns ## KEGG: LDBND_0145 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 159 1 159 159 292 100.0 3e-78 MDTLFYLVADTLLAAYAGYSWYSQATVILRARWRMTAVVMPILLVWLGASWGYLDLGTPG FIVFLALFILTGILEATSGFADKRVVLSGYFRRTLKYSEISQVILTAAPPEVGDLSIVAL ETSRHQIYYLRFNKQASDVASFLTQRLERGVNIDVRKMG >gi|300497511|gb|AEAT01000019.1| GENE 49 52562 - 53260 1152 232 aa, chain + ## HITS:1 COG:lin2882 KEGG:ns NR:ns ## COG: lin2882 COG0846 # Protein_GI_number: 16801942 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Listeria innocua # 6 232 1 229 229 216 49.0 2e-56 MDQAKLAEFKADLKKAKHPVFLTGAGVSTHSGIPDYRSKTGIYNGVSEPPEVILSEETLY DRPQLFYDFVMQNMYFPDAKPNMIHEKIAAICNEKGALITQNIDTLDRQAGNQHVTEFHG NLYDIYCSKCKQKVSYEDYAKGYKHECGGIIRPGIVLYGEGINPANVNQSILEMRQSDLV VIVGTSFVVYPFAGLLGYAAKDAKIWAVNLTEIPAQGIKQLTGDALEVFKEV >gi|300497511|gb|AEAT01000019.1| GENE 50 53501 - 54916 1175 471 aa, chain - ## HITS:1 COG:SA2486 KEGG:ns NR:ns ## COG: SA2486 COG0471 # Protein_GI_number: 15928280 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 1 471 1 472 472 427 50.0 1e-119 MLGKVKWKAWALPLILGVGLWLSTPLKPVAISVAAWHLFALFVATIVACITKPLPMMATT LIAITIATVTRLVTMEEVAAGFGNSTAWMVVMCMFMATGFIKSGLGKRIAYLFVRLFGKK TLGLAYALSLVETVLAIGIPSNNARVNGIMYPIIDNLSHEMGSSPEDGTQDKIGSFLVFN EYEVNIITSTMFLTGLAGNMVALGLAKTQGISISWMQWFIAAIVPGILSLLIVPLVLYKI YPPKIKETPNSKEWADKKLTEIGKMTAAEKIMIVVFILSIALWLIGSKIGIDATEVSFIA VALLLITGVIDTKDLLKESFAWNILTWLSIIMLMSKKLMILGFFPWFSKALGSLLGGMNW IWVLVVLFIAYFYLHYLFPSVSTQISALYAGFLSIALGAGVPKIMAALMLAFCGSIYLST SSYSAGPAAMLSSTGYVSNKDWWKLSAIIGAILIVIWLGIGLIWTKVIGFW >gi|300497511|gb|AEAT01000019.1| GENE 51 54934 - 56718 1583 594 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 14 469 42 477 484 94 27.0 6e-19 MFYNDRLKWDLAYDVIVVGFGGAGASSARFAADHGAQVLLIDSAPEGSEGGNTRYAGGAF AWGNNFNNLKDYYKQTYYPFKYDPKVLDEFIERVMDMKEYSKKYFDIEAMGTGRRPNGEY PEYRNANSMQSQSMTTGMYNGGFWKLLRKQVMDRLDKIDVWYESPAEHLIQDPDSKQVLG VQIKRKGLKVNVAATHGVVLSLGGFENNEDMVQNFLGQGSLAPIGTLYNQGKGIDLAVEV GARLWHMSNYDSHGFSLRNGDAREKFAYMINWKSLFNGSIFVAGDDGTRYYREDEEDRHG YKYNHGNWIMLPNQNHPHIVMDKVQFEQLQNDDSAKGDQIRELISYAIKADNLDELAEKI SAPKLSEAVDDYNFLVDQGRDMFLNRKIETMRKFGVGPYYAIPIRHNILHTHGGARRNEK CEVIDMAGFPIPNLYEAGELGDIFATKYIGANSIADLLISGEISGTNAAKNIARFKFEPR YNQFTKPNDWKSDAGTSIADFEAGPRQGIGTSENGISDTPIVVRVTASEDDKLAKIEVLQ QKESPSIGGKAIPLLTNKMLVSGETSVDAVSGATTTSRAFMDAVTSAFEQAKKN >gi|300497511|gb|AEAT01000019.1| GENE 52 57220 - 57804 255 194 aa, chain + ## HITS:1 COG:CAC1588 KEGG:ns NR:ns ## COG: CAC1588 COG0583 # Protein_GI_number: 15894866 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 1 184 96 286 293 59 23.0 3e-09 MPPIVHKFYQAGILSLLEEHYERSAASFKNLETGKIDVAIYSWNVPINDPNYFIHTLDKT ELVIIAHPNHPLAKYDSVSAKDLAQERFIARSPGYLTRESLDILGHKGNFTPNIIYTSKT MELMIDLVRENMGIAFVMDSSLKSNHNLKVIHLKNTEKMYAYMQIAMRKSFVPNQYQQRG IEILRNFKGHLLSR >gi|300497511|gb|AEAT01000019.1| GENE 53 57902 - 58273 399 123 aa, chain - ## HITS:1 COG:PA1065 KEGG:ns NR:ns ## COG: PA1065 COG3189 # Protein_GI_number: 15596262 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pseudomonas aeruginosa # 2 121 25 142 157 102 48.0 2e-22 MSTIKTVRIYAKDQPAGYRILVDRLWPRGIKKEAANLDEWKKELAPSRDLRTWFKHDPAR YTDFRQDYLEELADNPEWPPFVEHLQELLQKGDVLFLYGAKDEEHNQAVVLKEAAEEALA KLA >gi|300497511|gb|AEAT01000019.1| GENE 54 58356 - 58982 782 208 aa, chain + ## HITS:1 COG:SA2134 KEGG:ns NR:ns ## COG: SA2134 COG2094 # Protein_GI_number: 15927924 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase # Organism: Staphylococcus aureus N315 # 7 200 3 193 202 155 45.0 4e-38 MDYRNFFTGRPTSEICRDLIGRPFYYQAGGKKIGGYIVEAEAYLGIYDRAAHSYGGRRSQ ANEGLWRAGGTIYIYSQRQYVFFDIACQEEGNPQGVLIRAIEPVWGLDQMLKNRGGKDGV LLTNGPAKLMQAMGIKSRNWDLAPLADSPFVIDLTEKKPAKEIIASPRIGIVQADPAWAQ APLRYYVAGNPYVSGMKKRDWVDDHGWL >gi|300497511|gb|AEAT01000019.1| GENE 55 59371 - 60954 2681 527 aa, chain + ## HITS:1 COG:SP0453_1 KEGG:ns NR:ns ## COG: SP0453_1 COG0834 # Protein_GI_number: 15900370 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Streptococcus pneumoniae TIGR4 # 12 327 6 325 325 275 49.0 2e-73 MKKHSSWISALMAAVMTLVLAVSWSQPAQASGTLKIGMEANYAPYNWTQTTSANGAVKID GTSSYANGYDVKIAKIIAKKLGKKVIVEKTQWDGLLPALTSGKIDLIIAGMSPTAERRKA INFTSPYRTTNFVVIVNKQSKYAKAKYLTNFKGAKLTAQQGTLHYDLIKQLPGAKREPAS KDFAAMRESLEAGTIDGYVAEDTELTSFQMMDSNITGVNLSKMKGFKVSSSDAEVSIGVK KGNDQLLSQVNKVLAGISTSERNKLMKEAVQQQPQTSTKKENWLVSMLKNYGQMILEGIG MTLLISLVGTIAGFFIGLLVGIVRTIPEPKNKFKKGLLAFCKWLLSVYVEVFRGTPMMVQ AAVIYYGIAQFWHINLNRTVAALIIVSINTGAYLAEVIRGGIISTPKGQFEAASALGMTH NQRMWSIILPQAIRNCLPSITNEFIVNIKDTSVLSIISVSELFFVGSTIASQSFQFFQTY LVISVIYLFLTFTITRIFNLIEKHIEGPENYNMMANQVQVGKQEGDK >gi|300497511|gb|AEAT01000019.1| GENE 56 60958 - 61719 261 253 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 26 234 147 353 398 105 33 9e-22 MADYKDNEIILNVQHLQKTYGEHQVLKDISFEVHKGKVMTVIGPSGGGKSTMLRCINLLE DPTGGEILFHDQNILDENYNIPRYRSKVGMVFQQFELFENKNVLQNCMIGQELVLKRSKA EAKKIALENLKTVGMDPYVDAKPRQLSGGQKQRVAIARAISMNPEILLFDEPTSALDPEM VGEVLETMKKLAKTGLTMIVVTHEMAFAKEVSDQVLFMSDGYVAEQGSPDEIFNHPQSEK TQKFLANFRGPQI >gi|300497511|gb|AEAT01000019.1| GENE 57 61767 - 62225 308 152 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0139 NR:ns ## KEGG: LDBND_0139 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 95 152 1 58 58 103 98.0 2e-21 MKKKIVFVLQLIANGYFATWPLRLIVDNSPKWRLSGPANGFLGFMDRVAKSVSWPIFLAY LLLLVMIVVAILWTYFFEFKQDKAKQAWQKVVWFLQLIINELACLGLASSLTMQVYDSQQ TWTIIFDLFMLFIVVIFAFALTEKFTNRGGNN >gi|300497511|gb|AEAT01000019.1| GENE 58 62426 - 63571 1808 381 aa, chain - ## HITS:1 COG:CAC2943_2 KEGG:ns NR:ns ## COG: CAC2943_2 COG0791 # Protein_GI_number: 15896196 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Clostridium acetobutylicum # 255 371 13 128 136 108 52.0 1e-23 MKKKNLLMTALATLSASGALLTTGASALADSYTVVKNDTLWGLSKKYGVSVSDLKKANGV SGHLIYVGQKLQIPTKSTKATKTAKTSTSTSTVDTTSTTHTVVKGDTLWSLAKKYGVSVS TLMKANNLSSSTILIGQSLNLRAGMTAYGVNGVTTGSSSTAASTNTASSTSTTASSQAPK AKKNATKAKSTTTNTSSNSNTSTSANTQSQSTASNSSASTTTNTNTAASNANTTSSTNTA ASRSQAVSQAPTASTSTATTTASASASAITSYALTFLGVPYVWGGTTPSGFDCSGLVQYV YSHFGINLGRTTYTQQYAGTKISVASAQAGDLYFWGSYGSAYHVAIALGGGQYVMAPAPG QNVMTGSVSSYTPSFAVRVLG >gi|300497511|gb|AEAT01000019.1| GENE 59 63801 - 64712 1158 303 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0136 NR:ns ## KEGG: LDBND_0136 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 303 1 303 303 591 99.0 1e-167 MKFQCSSCGLRLESLHFKLPGLVNDRLASLCDICRQRGLDPAAYPNPVVKLFAANLLYVF VGKDGEASGDFSLPDLKIRRSYEALMQDYDGNVLARQQLPRADFNQAVIKAEDDPSFFLP GKLPFAEKLQALGLSVDFQLNEVDYIDRERIRAKYKYRCQYCGRRGRSVDHKDPVSVSHD NSLDNLILSCSECNRIKSNMPYDLFVKLNEELQPLNKKLVKYENALGPLEKEFQDRRNML AAKVHLKGVVNDPELAAIRKENKRLRDAIDSLESDYDAARRLREDHFKLGWKLYLAQQDK EII >gi|300497511|gb|AEAT01000019.1| GENE 60 64834 - 64968 61 44 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSRNIHTGINPHRRPRNASNAKERVAHAAAMISFLNQAAKDENK >gi|300497511|gb|AEAT01000019.1| GENE 61 65561 - 66718 1840 385 aa, chain + ## HITS:1 COG:L20481 KEGG:ns NR:ns ## COG: L20481 COG0471 # Protein_GI_number: 15673760 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Lactococcus lactis # 51 383 49 390 392 114 29.0 3e-25 MEAAKSKSSNNFLTTFLTTLKKIFSDRILQITIVITIISLFFARPRSADMNWHTIESVTT MLVLIQVYSYLHVLDIIAYKLAAIADSTRKLILLFTLLSVFSGMFLGNDITCLTMIPLYL NIAKKYKLPEILPATLIGMGANIGAAFTPWGNPHNIFVVSNYHLAPAIFFKWTLPYLIVA MVVFLCIFFFIPKKNIPTQEVVEINVSWPMTMITTVIFCFFFVGVFKFVPIWMPMLASII WALIVNWKILLHIDYSLLLTFTLFFFFISDIQQIPFVVALIHGLVGTEMSTYWTSILSSQ VMSNVPSTILVGKFSKYAEALTLGSNIGGFGSPIGSMANMLVMRTFYAHASKDAKKKFFP KWLGYQIAGLIILSLIGWVIVKLNL >gi|300497511|gb|AEAT01000019.1| GENE 62 66876 - 67430 1059 184 aa, chain + ## HITS:1 COG:SP1284 KEGG:ns NR:ns ## COG: SP1284 COG1704 # Protein_GI_number: 15901144 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 4 184 3 181 186 203 60.0 2e-52 MAVWIIAILVVLIVIFYISAYNGLQKAKVNTEEAWSQISVQLKRRNDLIPNLVETVKGYA KHEKETLSKVVELRNQLTQLPADDHEGAMRLSNQITDSLKTIFALSESYPDLKANTNFAN LQEELTNTENKIAYSRQLFNSSAAVYNKMLLVFPSNIVANIHHFTKVDYLEIPEEETKVP KVSF >gi|300497511|gb|AEAT01000019.1| GENE 63 67447 - 68346 1111 299 aa, chain + ## HITS:1 COG:SPy0331 KEGG:ns NR:ns ## COG: SPy0331 COG0501 # Protein_GI_number: 15674492 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Streptococcus pyogenes M1 GAS # 1 299 1 298 298 273 51.0 2e-73 MLYQQIAQNKRKTAGVLVVFVLIFALVGAGLGQLMWGKPLPGVLTAGVIALIYSFLVFQD PVNVVMSMNHAQHLNKEDNPQLFHIVEDMALVANIPMPEVYLIPDKSPNAFATGLSPDKS AIAVTQGLLDMMNREELEGVLGHEISHIRNYDIRLSMVALVLVSAISFIADFAQRCVWFG FGLDRDDDDDREGGTIGMIIGVIGVIFVLILGPLAASLAQMALSRNREYLADASSVELTR NPHGLISALTKIENSPPMQAASSASASLYIEDPIRRHSLSHLFDTHPATADRIKRLEKM >gi|300497511|gb|AEAT01000019.1| GENE 64 68492 - 68677 169 61 aa, chain + ## HITS:1 COG:no KEGG:LBUL_0135 NR:ns ## KEGG: LBUL_0135 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 57 1 57 280 118 100.0 8e-26 MYGQYFKRLRNYKKMTLGEAAKDITSSPALSRWENGVDDIRLKKFLALLDRVDITPRGKL R >gi|300497511|gb|AEAT01000019.1| GENE 65 68652 - 69170 407 172 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0130 NR:ns ## KEGG: LBUL_0130 # Name: not_defined # Def: ABC transporter permease # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 169 1 169 248 209 98.0 3e-53 MKRYLPVYYLGLKNSLIYRANMIMKLVLQLASLLVTVLMWKFILAESGNFQQMARYLLAT NLISLIFTTGPVFQFADMVESGNLSLYLTRPLSLYWYLFNYNLGLQTPLLLLYLILLLFL VKSAGPVFLLLIYLFLSSLMFFSLMMVLAMLSFWLLNMWPLRSGINAVYPWG >gi|300497511|gb|AEAT01000019.1| GENE 66 69167 - 70114 564 315 aa, chain - ## HITS:1 COG:DR1581 KEGG:ns NR:ns ## COG: DR1581 COG4586 # Protein_GI_number: 15806589 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Deinococcus radiodurans # 7 250 10 253 346 228 45.0 1e-59 MRRRKVIEIDQLSFDYRTFSKEPGLKGALQDIFHRKYQLVPALKDLNLTIKDGEIIGLIG PNGAGKTTLTKLLTGIIQPTSGSVKVAGLIPGSHQKKLLRQIGVMFGQKSQLSWNLPAVD TLNMLAAIYQLKPDRYQARLRELCDLLDIVEIVKTPVRKLSLGQRMRCELACSLIHEPSY LFLDEPTIGLDLLTQEKIYNFLKTENRLHQTTIILTSHNVRDIEALAQRLLILSKGELIF NDSLNKLPLQIDQSDSYCLKYWINDQTDVREEIIHDPQQLFVKMEKFQPEQIISLSKSGI SAEEVILKIYQREKQ >gi|300497511|gb|AEAT01000019.1| GENE 67 70241 - 71089 1025 282 aa, chain - ## HITS:1 COG:all1651_2 KEGG:ns NR:ns ## COG: all1651_2 COG2207 # Protein_GI_number: 17229143 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Nostoc sp. PCC 7120 # 176 281 41 147 147 63 32.0 5e-10 MTEIAKLQKKLQEAGDATLPLSKGKGQTADCTFVLLGDKAEGWKNDSLTALLLLAGTGHF RAGQKKWQVKPGDWFLLAAGQDCKASLKEGLLVQLVLPEAFSVKDLKKELMLGEAEEVGT HGRVAVDGPAGAAFLAALNEYQTSDSVSSVLLKSQLLTALALALRALNEVGSLSEREIRR YISENYVSTSVKDAAAYYQLSPNYFSDLVKKKTGQSFIELVDEQKMEAAVRLLARPDLSI KQIIGLVGYRGKSFFYEKFGKYYGMSPAAKRKELFRQQGINL >gi|300497511|gb|AEAT01000019.1| GENE 68 71150 - 72625 2198 491 aa, chain - ## HITS:1 COG:L35134 KEGG:ns NR:ns ## COG: L35134 COG0477 # Protein_GI_number: 15672220 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 4 484 5 483 486 249 33.0 1e-65 MSDQRRRVITVALMLSNVMSGLDNTIINTALPRIIADLHGIEYTGWLVAIFLLGTAVSTP LWSKLGERRGNKLAYQLAAACFLLGALLQGCAQQMSFLLTFRLLAGIGNGGMVSLPYIIY SDLYPNAHKRLKVLGMVSAFFTTATILGPLFGGWIVDALSWRWVFYINIPVALISIVLIQ IFFLDEKKDRPVRRVDLGGAICLSFGVVALLLGTQLVGSAGLATALLIFAAALIFIGLLV IIERRAEDPIIPGRLFKNIPLVVDFTLFVLIWAAMSAYSVYAPMWAEGLMATTALVGGMT QIPGAFTDMLGSLSVEKMRRRWSAYQVMLATCWLLAAGYLAMAVAPRYFPYWGILLAGML QGWGHGVMFNQLQVKVQEDAESQDVPVATSFSYLIRMLAMAISSSVFGVILNEHLAKGVK ASGGKITLSMLNHLSDAKTRASLPNQDLVQMENILYGAIHAIFWAAFILVFLSLLLAIWA RWREKKLAGKR >gi|300497511|gb|AEAT01000019.1| GENE 69 72925 - 74280 171 451 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145635097|ref|ZP_01790803.1| 50S ribosomal protein L25 [Haemophilus influenzae PittAA] # 247 426 11 190 205 70 28 3e-11 MQAELTIDHLTFSYGDREVIRDLSLTLPAGTFSLLIGPTGCGKSTLLKIMAGLYPKYGGQ LTSGQVSLGGRSQAMMFQEAGEQFTMATPREEIIFAMENLGKSKTEFADRLKLASEFAKI DSLLDQKIVTMSGGEKQRVALAVLVAMDVDLFLLDEPFASVDPAARCFLIGRLAKLKEQG KTIIITDHLFDDYQGKVDGVYRFKGEQVDLLTKDEQALLLATEPIGLHFPLPENEPAAFV MKNFAIKQGRPLLEQKELAIPKGKVTLITGPNGSGKSSLFKAMTKLLDYQGSLTWEGKEV AKLKERTYFQHVAQIFQNASDQFMAITVKEELALSQKHASPYFTPEVLDQALADLDLADH MDQVVYSLSGGQKKKLQILLMLLSGQEVLLIDEPLSGLDQKSIEQVVQLLQKCQEKSGQT ILLISHQFYGISTWCDYHLRLAGRELAFVQD >gi|300497511|gb|AEAT01000019.1| GENE 70 74290 - 74958 829 222 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0123 NR:ns ## KEGG: LDBND_0123 # Name: not_defined # Def: ABC cobalt transporter permease transporter # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: ABC transporters [PATH:lde02010] # 1 211 1 211 222 377 98.0 1e-103 MTKSKMNPSLKFLLTLIISLELSFKVSLFSNVIVIVLSLAYLLYRRIKPKALGGMLLATG LAAITVFSSGYIFSDHRDLWYALDISSRAFVYTFTTACLTISTTAEEMARSLEQNLHLPS KFAYGTLAALNIIPRMQAAVKQIRVAGMMRGVYLSFWSPVLYFNAILVALNSADNLAQGM ESHGYREGAPRSVIVEVPLTNKDWLLFIIAVLLLNLGAFLLP Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:09:34 2011 Seq name: gi|300497499|gb|AEAT01000020.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00046, whole genome shotgun sequence Length of sequence - 8082 bp Number of predicted genes - 10, with homology - 9 Number of transcription units - 6, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 324 - 383 1.9 1 1 Tu 1 . + CDS 485 - 709 119 ## + Prom 1507 - 1566 2.9 2 2 Tu 1 . + CDS 1669 - 2328 170 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) + Term 2547 - 2593 1.3 - Term 2072 - 2102 -0.4 3 3 Tu 1 . - CDS 2342 - 3190 320 ## Ldb0159 putative transcriptional regulator - Prom 3302 - 3361 6.6 - Term 3350 - 3406 9.1 4 4 Op 1 . - CDS 3601 - 4002 307 ## COG3654 Prophage maintenance system killer protein 5 4 Op 2 . - CDS 3999 - 4244 231 ## gi|300811514|ref|ZP_07092007.1| putative toxin-antitoxin system, antitoxin component, AbrB family 6 4 Op 3 . - CDS 4318 - 5022 1185 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase - Prom 5064 - 5123 5.1 + Prom 5115 - 5174 4.1 7 5 Op 1 . + CDS 5238 - 6080 1043 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 6213 - 6251 -0.1 + Prom 6146 - 6205 1.9 8 5 Op 2 . + CDS 6293 - 6544 214 ## Ldb2188 hypothetical protein + Term 6549 - 6584 5.8 - Term 6536 - 6572 2.2 9 6 Op 1 . - CDS 6585 - 6752 200 ## LDBND_2019 hypothetical protein 10 6 Op 2 . - CDS 6783 - 7868 1663 ## COG0477 Permeases of the major facilitator superfamily - Prom 7958 - 8017 3.7 Predicted protein(s) >gi|300497499|gb|AEAT01000020.1| GENE 1 485 - 709 119 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTEFSPEADTTLLTSRYEFFTKIIRKIGNGTVVKVVCLELQPLVSNVYVPFISSDFATAE NIDLRNRYQGTPFE >gi|300497499|gb|AEAT01000020.1| GENE 2 1669 - 2328 170 219 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 24 210 16 215 223 70 29 5e-12 MKDSVSADNRSGDLKLIDISVKRKGEEIFSHINLSVSRGDKIVLAGPSGIGKSTLLQAMI GQLPLSEGQVLFAGERLKPGDFAYISQKVWTFQGSIRENLSLGQKYEDNEMLEVLDKVGL KKELGQNILDVSVAEDGANLSGGQAQRLAMARGLLRHKQLFLFDEATSSLDQENADLIHE LIYQLPATVVEVAHYYSASLIRKYDVTVYELTKEGLRLK >gi|300497499|gb|AEAT01000020.1| GENE 3 2342 - 3190 320 282 aa, chain - ## HITS:1 COG:no KEGG:Ldb0159 NR:ns ## KEGG: Ldb0159 # Name: not_defined # Def: putative transcriptional regulator # Organism: L.delbrueckii # Pathway: not_defined # 1 274 1 275 279 188 37.0 2e-46 MIGQIFKQLRKSKHLTLSAVAHDIISISQLSRWENGTVDIPLNIFLALLARINVSPREFL SMTAIEDGRNNSFFNQLAILYRQKQSDKVYQLFLENIASYHRNNNVDHLFQAAATANIFY DLTKKNCFSAKDKAALVSALTSSEHWNLQTIRALGNSVFILPVELVFDLSNKLLNDLNYL HNLNFELYLDAWVTIINSDLILIIKNFGLAQKLFKNIKKIALPPLLSSIKIRISFLELLI EYRVNHDSHALQSFLDALELIGMADLKDDLLSEWALIDDTLI >gi|300497499|gb|AEAT01000020.1| GENE 4 3601 - 4002 307 133 aa, chain - ## HITS:1 COG:SP0889 KEGG:ns NR:ns ## COG: SP0889 COG3654 # Protein_GI_number: 15900772 # Func_class: R General function prediction only # Function: Prophage maintenance system killer protein # Organism: Streptococcus pneumoniae TIGR4 # 3 129 4 131 137 73 30.0 1e-13 MKYLSAEEIVAVNKRVLERLGQKATGLQYPHGLSVVVEQPQMVVFGTELYPTIWLKAAYI MQKITKKHIFEDGNKRTAYISTLLFLHRNGYQLRLTTDEAEALILQLTLSDDTEDEMKKI ATVLERNSLAIID >gi|300497499|gb|AEAT01000020.1| GENE 5 3999 - 4244 231 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300811514|ref|ZP_07092007.1| ## NR: gi|300811514|ref|ZP_07092007.1| putative toxin-antitoxin system, antitoxin component, AbrB family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] putative toxin-antitoxin system, antitoxin component, AbrB family [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 29 81 1 53 53 90 98.0 5e-17 MQYSIGTSKLFKSGNSYGFRVTKHDKELLSANAGDVFDKEISPDGQTITFKKRKKVSPET LALIDKLFDENRELMERLKDE >gi|300497499|gb|AEAT01000020.1| GENE 6 4318 - 5022 1185 234 aa, chain - ## HITS:1 COG:L14408 KEGG:ns NR:ns ## COG: L14408 COG0363 # Protein_GI_number: 15673555 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Lactococcus lactis # 1 233 1 233 235 295 63.0 7e-80 MKIIVVKNASELGKQAFYLLAKAVDEGAKTLGLATGSSPVELYQEIVASQLDFSQMTSVN LDEYVGLSPENPQSYHYFMNQHLFQYKPFKRSYLPDGQAKDIQAECGRYNQILAENPVDL QVLGIGQNGHIAFNEPGTPFDSVTHEVALTESTIKANARFFDSIDEVPKSAICMGIANIM AAKEIILLAKGESKAKAIKAMVEGPVTTDVPASVLQKHPNVTVVADQAAASLLK >gi|300497499|gb|AEAT01000020.1| GENE 7 5238 - 6080 1043 280 aa, chain + ## HITS:1 COG:mlr5327 KEGG:ns NR:ns ## COG: mlr5327 COG0656 # Protein_GI_number: 13474445 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Mesorhizobium loti # 9 280 14 281 281 234 44.0 1e-61 MKYMAVKEEKLSQLGLGTWNMGENASRREEEIAAIRYGLSAGVNVIDTAEMYGEGRAESL VGEAIKDLDRSQLFLISKFYPWHASPDDQKKRLAASLKRLRTDYLDLYLLHWKSDYPLAE TVKGLHDLQAAGLIRHWGVSNFDTADMQELVDIAREGAVFANEDLYNLDKRGVEYDLLPW QKQHGIAFIGYSPFNSGNGQSIPVKASLKQIADKRGVSVHQVMLAWTMRTGQVLTIPKAG SVDHMRANLAAADLVLTAGELAALDRDYLPPKSKQPLESI >gi|300497499|gb|AEAT01000020.1| GENE 8 6293 - 6544 214 83 aa, chain + ## HITS:1 COG:no KEGG:Ldb2188 NR:ns ## KEGG: Ldb2188 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 83 41 123 123 119 97.0 3e-26 MSRKQFTLLRLKWSWPYLACLFVIHLIYWPGSWLAAISLILLFAAAAGMTLYQRRYLGGI KDSIWVFAVFALLRLLTTSLFKI >gi|300497499|gb|AEAT01000020.1| GENE 9 6585 - 6752 200 55 aa, chain - ## HITS:1 COG:no KEGG:LDBND_2019 NR:ns ## KEGG: LDBND_2019 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 55 25 79 79 88 96.0 9e-17 MSVIIAIAGSPYQGQSKQVVMGSQAAFIVLFIFTLLIFACVLRLIKRDKQGLVKN >gi|300497499|gb|AEAT01000020.1| GENE 10 6783 - 7868 1663 361 aa, chain - ## HITS:1 COG:L180636 KEGG:ns NR:ns ## COG: L180636 COG0477 # Protein_GI_number: 15673521 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 2 358 48 401 457 176 33.0 8e-44 MKVFNQSLNNVQWITTAYLLAVTLTIVLAAYLQRSFKFKNLIIAAGTASVIGGVICMLSN TLPVMLLGRVIQGIGTGIAMPLLFSIIMLEVPRAKQGSFVGTAGVIVALAPSLGPTYGGI CLAALNWRFNFIFTLPITIVFFIIVARFMSDNKAHRDHLNFSEYLLIVLALVALTLAVNN LSSGFASPLVWGGLLVTVISFVIFFKLAKQEGKAHIINISVLKNTSFNLGLLIYTFLQFI QISLTFVIPNLAQLGLKTSALTSGMLLLLGSLLSAFFGPVMGGLLDSQGFKKLFLIGSFL AMAGILLYIIFAQKLSIALIVIFHVMFMTGFSMMYNNSMTIGLQQLEVMHIADGNALFNM L Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:09:54 2011 Seq name: gi|300497497|gb|AEAT01000021.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00013, whole genome shotgun sequence Length of sequence - 777 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 29 - 508 183 ## gi|325685067|gb|EGD27201.1| HPr kinase - Prom 542 - 601 4.6 Predicted protein(s) >gi|300497497|gb|AEAT01000021.1| GENE 1 29 - 508 183 159 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|325685067|gb|EGD27201.1| ## NR: gi|325685067|gb|EGD27201.1| HPr kinase [Lactobacillus delbrueckii subsp. lactis DSM 20072] # 1 159 124 282 282 312 100.0 4e-84 MLDKGASLISDDIVAVRNSDWFLMPFPKAVAVRNTNDFYFQPQLNKLRMAAPESLRSIYI PKLGLDSYLIHIDSVPGWRYSHDPLKIDYIYLISDNFESDVDLLTFIQYLLAQATLSDSS YVTTLVHIFNLLQAPPFLVDIRNHEKMFQLLHTHHLPTY Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:10:07 2011 Seq name: gi|300497489|gb|AEAT01000022.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00115, whole genome shotgun sequence Length of sequence - 12975 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 5, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 4 - 76 79.9 # Asn GTT 0 0 + TRNA 85 - 175 57.5 # Ser GGA 0 0 + TRNA 182 - 255 73.7 # Met CAT 0 0 + TRNA 417 - 488 67.2 # Glu TTC 0 0 + TRNA 492 - 564 89.1 # Val TAC 0 0 + 5S_RRNA 498 - 549 92.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. + Prom 418 - 477 75.9 1 1 Op 1 4/0.500 + CDS 713 - 1909 1916 ## COG0192 S-adenosylmethionine synthetase 2 1 Op 2 . + CDS 1972 - 3420 1903 ## COG0477 Permeases of the major facilitator superfamily + Term 3445 - 3479 5.3 - Term 3427 - 3474 9.5 3 2 Tu 1 . - CDS 3475 - 4134 577 ## COG0671 Membrane-associated phospholipid phosphatase - Prom 4173 - 4232 5.2 + Prom 4135 - 4194 9.3 4 3 Op 1 . + CDS 4431 - 6845 4048 ## COG0495 Leucyl-tRNA synthetase + Prom 6855 - 6914 3.2 5 3 Op 2 . + CDS 6940 - 8559 2218 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid + Term 8579 - 8610 3.4 + Prom 8681 - 8740 9.6 6 4 Tu 1 . + CDS 8871 - 11285 3697 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase + Term 11306 - 11337 3.2 + Prom 11345 - 11404 8.6 7 5 Tu 1 . + CDS 11447 - 12769 1420 ## LDBND_1488 membrane protein + Term 12775 - 12804 2.1 Predicted protein(s) >gi|300497489|gb|AEAT01000022.1| GENE 1 713 - 1909 1916 398 aa, chain + ## HITS:1 COG:BS_metK KEGG:ns NR:ns ## COG: BS_metK COG0192 # Protein_GI_number: 16080107 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Bacillus subtilis # 3 391 5 394 400 551 70.0 1e-157 MEKHLFTSESVSEGHPDKVADQISDAILDAVLAQDPQAHVACETSVTTGLVLLFGEISTT ANVDYQQVARKTIREIGYNDPDLGFDADNCAVLVALDKQSPDIAGGVDEALEVRGEDDSD ELDQIGAGDQGLMFGFAINETPELMPLPISLAHRLMRKVAQLRKEETFPWLRPDAKAQVT VEYDDTGKPKRVDTVVISTQTSPDVTNEEIRVAMVHDVIKEVIPDKFLDDETKYLINPSG RFVIGGPKGDAGLTGRKLIVDTYGGYARHGGGAFSGKDATKVDRSASYAARYVAKNIVAA GLADRCEVQLAYAIGVAHPVSIMIDTAGTGKVSDQLLTEAVRANFDLRPAGIIKMLDLRR PIYKQTAAYGHFGRTDVDLPWEKADKAEALQAFVNGRK >gi|300497489|gb|AEAT01000022.1| GENE 2 1972 - 3420 1903 482 aa, chain + ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 1 480 1 485 491 342 42.0 1e-93 MKKTNVKMVTLAVFITTFMSAIEGTIVSTAMPTIIADLDGLAIMSWVVSVFLLMTAVSTP IYGKLADSVGRKPVFLFGIGLFVIGSALCGFSHSMVELIIFRVLQGLGSGAIQTAGVTVL ADMYDIDKRAKMLGLTSGFWGLASVIAPLLGGFIVQKLSWHWVFMINVPIGLLAFLLVAF YLHEDFAKNKLQIDLKGSFSLVIFLLSLMLLLQGLEKGFNWTLLLLAAIMLVSLWAFTKV EKTAADPIIPFSILKDKEFLAVNILQLLVSGVVIGFEFYIPTWLQGINGVSASIAGFAIT PSSLLWVCGSFLAGDLMGRWGTQKYFDASLLLLIGADLAFILIPTYTPFWVFCLIAVFNG IGFGSIATASQVRAQMVVDKSQVGVATSFNTLMKYLGQTVMMVFYGMTFNVVVASGLKKQ PSLTSEMMNKIVSPVQAKSLDPAVLAPLREILHSSMRGIYIVSLIALLLSLVFNHIYRQK KD >gi|300497489|gb|AEAT01000022.1| GENE 3 3475 - 4134 577 219 aa, chain - ## HITS:1 COG:lin1664 KEGG:ns NR:ns ## COG: lin1664 COG0671 # Protein_GI_number: 16800732 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Listeria innocua # 12 198 5 191 217 87 33.0 3e-17 MNTKENKVNYQPLLIFGGAFSLFFAFWVYLIASKNPFIKTFDTVVYNAIRNNNPVERQLA FYWTQLGNTLTITVFTVVLVLFLVYQRNYIHAVFASLTMIAANACNSIIKNIIQRQRPRM DKAVQADGFSFPSGHSVGSMTLALVLIALLVVLVKKKPVKTWLIVFCVFFTLSIGFTRMY LHVHWPSDVLGGWCEGLAFSSLASWLFFKALDKKNKLNP >gi|300497489|gb|AEAT01000022.1| GENE 4 4431 - 6845 4048 804 aa, chain + ## HITS:1 COG:lin1769 KEGG:ns NR:ns ## COG: lin1769 COG0495 # Protein_GI_number: 16800837 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Listeria innocua # 2 803 3 802 803 1177 69.0 0 MYNHKVVEKKWQKYWLENKTFKTGTDPEKPKYYVLDMFPYPSGKGLHVGHPEGYTATDIM ARMKRAQGYNVLHPMGWDAFGLPAEQYALQTGNDPATFTDENIAHFKKQLQALGFSYDWD REIKTTDPNYYKWTQWIFEQMYKMGLAYEAEVPVNWSPDLGTVVANEEVIDGKTERGGYP VYRRKMRQWMLKITAYADRLLDDLDDLDWPEPIKEMQRNWIGRSVGAQVTFKIKDSDKSF AVFTTRPDTLFGCSYTVLAPENELVKEITSPEQKEAVDAYIKSIESKSDLERTDLNKDKT GVFTGAYAINPVNGEEVPVWISDYVLATYGTGAVMAVPAHDERDYAFATKFDLPIKEVVE GGDISKEAFAGDGVHVNSGFLNGLHNEEAKAKMVDWLTEKGVGEKKVNYKMRDWNFSRQR YWGEPIPVIHWEDGETTLVPEDELPLRLPKESNIKPSGTPESPLANLTDWVNVVDENGRK GKRETNTMPQWAGSSWYFLRYIDPHNDKALADPELLKKWMPVDLYIGGAEHATLHLLYAR FWHKVLYDLGVVPTKEPFQKLYNQGLILKNHEKMSKSRGNVVNPDDVVDEYGADSLRTYE MFMGPLNASIDWDDNGPSGVKKFLDRVWRTFVNDLDLDPIPSEKITDKNDGKLDKIYNET VKTVTEHFEELHFNTAISQMMVFMNACQKVDKIPREYAEGFVKLMAPVAPHMMEEIWHVF GHDESVQFAAWPTYDASKLVESTVEMAVTVNGKKRGNFQIAKDASREEAQAAATALPHVK EFLEGKEIKKVIVVPNKIVNIVAK >gi|300497489|gb|AEAT01000022.1| GENE 5 6940 - 8559 2218 539 aa, chain + ## HITS:1 COG:SP1529 KEGG:ns NR:ns ## COG: SP1529 COG2244 # Protein_GI_number: 15901374 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Streptococcus pneumoniae TIGR4 # 14 539 1 527 529 320 36.0 3e-87 MAKNKSQTNSQAQLLKGSAWMTIGSILSRILGAIYIIPWYAWMGKYGNLANSLTAKSYNI YSLFIIISTAGIPGAIAKQIAKYNALNEYGVGRKLFRHGLALMGVFGIISTACMYFLALP LSGFNPQEVPVIRSLALAVLIIPILSILRGYFQGFNDMMPSAMSQFVEQLARVIWMLLTA YVIMRVQHGNYVDAVTQSNLAAAIGAVFGIGLLVIFYLRQKRTVDPLIAQSNNQVQVSTN SLLFEIIQQSIPFIIIDSGINIFQLVDQYTFHPMIASFMHVPYDTVEIWYALFGLNANKL IMIVVSLSTAMAVTAIPLLSGAHARRDYRDISRQIGNTLELFLFVLLPASLGMAAISDPL YTIFYGYDRLGAHVLYLSSFTAISLGMFTVLMAILQGLDENMYAIRYLIFGLVIKAIVQY PMIRLFKVYGPLLATNLGLLAVIAMSLKHLSVKYRWRADRIMRRFIGIASFSIVMFAAVF AAVKLGGLFLSPYRRLSAMLLSGLAVAVGVLVYGALSLKTGLAENILGSRVTRIMQKFR >gi|300497489|gb|AEAT01000022.1| GENE 6 8871 - 11285 3697 804 aa, chain + ## HITS:1 COG:PAE2423 KEGG:ns NR:ns ## COG: PAE2423 COG0574 # Protein_GI_number: 18313335 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Pyrobaculum aerophilum # 18 790 3 781 811 709 47.0 0 MEINDKKELTEEERKNAYVLWFNQLRRADVALVGGKSASLGELTSGTDVPVPYGFATTAH GYRHFMEVNGLNEKVNALLATLKDPEDSEELHRVCSQIRKIMREAPMPEDLAEDIGNSYD ELAKMTGQNEPYVAVRSSATAEDLPDASFAGEQDTYLNVRGRKDVIRKVQDCYASLFTDR ATYYRIKQKFPQEKVALSAAVQMMAFSKSAGVMFTVNVANGDDTKVMIEGSWGLGEYIVQ GTVTPDNFEVDKESMRIVSKTINNKNIELIRLPGGGVEQRDVPEDMAKSPCLTDEEVIEL AGYAKQIEKHYGCYMDMEWSRDQDDKLWLVQARPETVWSQRKKEGGAKEATDAKAPSSNK VLVKGLPASPGVASGIVHVIDDPKDIGDFKEGEILVTLMTSPDWVPAMKKAAAIVTNNGG MTCHAAIVSREMQIPCIVGTASRGTFATRLLKTGQEVTVDAKNGVVYQGVADEVVKPKKA ETAPMAAAEYFPPTATRVMMNLGDPDLAEKYATLPADGIGLMREEFLWTTYIHQHPLYLI ETGHPERVVNELANGISKVCRAMNPRPVVLRFSDFKSSEYRNLKGGDKYEPHEPADLLGW RGASRYYDPKYIEAFKLELEAVKKVRNEFGLKNLNVMIPFCRTVEEAEKVTKIMADEGLE RSRDFKVFMMAEIPSNIILADKFNKYVDGYSIGSNDLTMLIMGTDRNNDAISALYDERNL AVKRAIRHLIKTAHKDGKTVSICGQAPSEYPDFTEFLVKSGIDYVSVNPDMVKETKLNVA HFEQRILLDKATGLGMQDTEDYEW >gi|300497489|gb|AEAT01000022.1| GENE 7 11447 - 12769 1420 440 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1488 NR:ns ## KEGG: LDBND_1488 # Name: not_defined # Def: membrane protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 440 1 389 389 477 81.0 1e-133 MAQQYYSMDQIAKLAQVSQQQVYYLINMKFKFKPTLTDPSGNKFYDERAVGQIFQELGKV LPKSAASPATDNGLLDINALAETTGLGKKKLRIFLREHKDLKPDFVDEKNHNKKYWGPSA IQYINDHFGAEEAKAEEKTTEVEGKAEAAEVVEAAKTEEKPAEEEKQEQASQVEDENKEE TIAEEEVKEEVVEEEKSAAEEVKEEDKPAGPRFIKKAPRPAMEKLAEHPQVELPFAFDDS EEAENKAEEADKPGRGPEVKEEDKPAGPRFIKKAPRPATEKLAEHPQVELPFTFDDSEEA EHKAEEADKPGHGPEVKEEAKPAEKSDEPANDQQFVVRKRTNDDKRGRGNYGKRRNNQRN GYQNQNRTNNYSKRRELFAGKMKLVTEKGTFYTDQFASLEELAEYVFSSKDSFMKVEKYN RGEFSPAYISTKIIIEFEEV Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:10:16 2011 Seq name: gi|300497488|gb|AEAT01000023.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00134, whole genome shotgun sequence Length of sequence - 520 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:10:21 2011 Seq name: gi|300497471|gb|AEAT01000024.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00165, whole genome shotgun sequence Length of sequence - 13827 bp Number of predicted genes - 18, with homology - 17 Number of transcription units - 6, operones - 2 average op.length - 7.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 1000 1441 ## LDBND_0820 membrane protein 2 1 Op 2 . + CDS 1076 - 2149 1537 ## COG0628 Predicted permease + Term 2185 - 2221 5.2 + Prom 2260 - 2319 6.8 3 2 Op 1 . + CDS 2432 - 3391 1034 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 4 2 Op 2 . + CDS 3464 - 3709 539 ## LDBND_0823 acyl carrier protein 5 2 Op 3 26/0.000 + CDS 3722 - 4666 937 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 6 2 Op 4 11/0.000 + CDS 4650 - 5372 270 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 7 2 Op 5 4/0.000 + CDS 5403 - 6602 1712 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 8 2 Op 6 4/0.000 + CDS 6593 - 7075 416 ## COG0511 Biotin carboxyl carrier protein 9 2 Op 7 4/0.000 + CDS 7077 - 7520 674 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 10 2 Op 8 4/0.000 + CDS 7513 - 8895 1811 ## COG0439 Biotin carboxylase 11 2 Op 9 10/0.000 + CDS 8882 - 9730 1093 ## COG0777 Acetyl-CoA carboxylase beta subunit 12 2 Op 10 . + CDS 9723 - 10490 1124 ## COG0825 Acetyl-CoA carboxylase alpha subunit 13 2 Op 11 . + CDS 10500 - 11264 1212 ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) 14 2 Op 12 . + CDS 11274 - 11939 515 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase + Term 12084 - 12117 3.1 + TRNA 11994 - 12077 57.5 # Leu CAG 0 0 - Term 12139 - 12173 8.3 15 3 Tu 1 . - CDS 12181 - 12813 979 ## LDBND_0834 hypothetical protein - Prom 12836 - 12895 6.4 + Prom 12777 - 12836 7.5 16 4 Tu 1 . + CDS 12959 - 13165 68 ## + Term 13408 - 13450 1.4 17 5 Tu 1 . - CDS 12980 - 13348 63 ## LDBND_0835 hypothetical protein - Prom 13547 - 13606 5.3 + Prom 13501 - 13560 5.5 18 6 Tu 1 . + CDS 13603 - 13825 423 ## LDBND_0836 formate/nitrite family of transporter Predicted protein(s) >gi|300497471|gb|AEAT01000024.1| GENE 1 2 - 1000 1441 332 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0820 NR:ns ## KEGG: LDBND_0820 # Name: not_defined # Def: membrane protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 312 260 571 591 604 99.0 1e-171 ELIGLALFALSPLLYLPVFIKSRKSGSPVKAKKEIGHNFEIPAFSPTTAQILVTKKDPDG KALAGEIALRAGRGEITIKAGKKGKNFTYAKTSKYKGDLPLLNRLFKKVGNGQSFSNKDL KQYSGSQEITSSYKNWQEASQKALIKEGYIDQKLQDREELLSLYTLGLMFVSVAAIVVCF FLYDKYTFWLLPAILWVLAVFGLARLRLHHFSDLTEKGARATEQALGFEAMLDDIGQFKL RDIGELTLWEQVMPYAIAFGLAKKVLKQLKLEFPEEIAADPYWTYYYAGASYGAFASSFD EAISSSAGSGGNFSASSASSGGFGGGSGGGAF >gi|300497471|gb|AEAT01000024.1| GENE 2 1076 - 2149 1537 357 aa, chain + ## HITS:1 COG:lin0948 KEGG:ns NR:ns ## COG: lin0948 COG0628 # Protein_GI_number: 16800017 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 8 349 6 345 348 261 43.0 1e-69 MEARLWNRFKNNIHLRRATVLVMIILALYYVRTMMNTILLTFIFTYLIVHLVRFVQGKFK HVSDKLIVALTYLLIVVLLYFALRYYVPVLVKQVTKMTKSVINYYQTNDVGWLMTQLHKY VSEKTISSQVKSSLTALTAALKGFGSVTMSFVMALVLSFFYTIELKEMQTFSQSFLKSDL FGWLFEDIAYFGRKFTNTFGVVLEAQFLIAICNTALTIVCLAIMKMPQIFALGLMVFICS LVPVAGVIISLIPLSLVAYTVGGIQDVIYILIMIAVLHTLETYILNPKFMSSKTELPIFY TFVVLLFGEHFFGIWGLIVSVPIFTFFLDILGVKNINSKQEKLQEARKRIEHKRLEK >gi|300497471|gb|AEAT01000024.1| GENE 3 2432 - 3391 1034 319 aa, chain + ## HITS:1 COG:L0182 KEGG:ns NR:ns ## COG: L0182 COG0332 # Protein_GI_number: 15672753 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Lactococcus lactis # 1 319 1 325 325 282 48.0 6e-76 MTYARIAKSSRYLPEFAVSNDDLSQIMETSDEWIKTRTGISSRRISQQENTSDLAIQVAK QLLAGEDPAGVDLIIVATMSPDAYTPATAALVQAAVGAENAACFDLSAACSGFVYALDVA EKMLRRPGGMALVIGAETLSKLVDWQDRTTAVLFGDGAGGVLVKNDALEPHFLASQLKSY GHLAKFLSAGQTSPQPFPGPVTGLAPFKMNGREVYKFATHKVPEVITACLEEAGVGLAEV DLFLLHQANYRIIKQVARRLDLPEEKFPCNIAEYGNTSAASEAILLAGLAEEGKAQAGDL VVLAGFGGGLTAAAQLVRL >gi|300497471|gb|AEAT01000024.1| GENE 4 3464 - 3709 539 81 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0823 NR:ns ## KEGG: LDBND_0823 # Name: not_defined # Def: acyl carrier protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 81 1 81 81 84 100.0 2e-15 MSEAEIFATVKKIAVEELDVEEDQVTMEANIKDDLEADSLDLFEIVNELEDEYDIELDAD ENTKTVADVVALVQKQLAEKD >gi|300497471|gb|AEAT01000024.1| GENE 5 3722 - 4666 937 314 aa, chain + ## HITS:1 COG:SPy1750 KEGG:ns NR:ns ## COG: SPy1750 COG0331 # Protein_GI_number: 15675599 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Streptococcus pyogenes M1 GAS # 2 308 3 307 312 182 35.0 9e-46 MKFGILFAGQGAQQAGMGLDFLSDPLFKETIDQASQACGLDLPEIWKNDRGQLDETRYVQ PALVAFEYGIWQMLVRDTDLPVCGLAGLSLGEYGALLASGCLTWPAGLALVVDRGEYMQL DSEKTASGMLALTKPDLPGLEDFLRAKQAAGQAVYLANYNSPKQVVLAGEKQLLPELGQE IADRKLAKRAIPLDVAGAFHTPLYQAASRKMGQRLKNETFDAGTYPVISNSTCQPFAKED LAKILEVQLMVPTHFDACVKGLLDLGMTASLEIGPGHALSAFAKQADKGLKTWQVGSLAE YQQFVEEEQNGFTK >gi|300497471|gb|AEAT01000024.1| GENE 6 4650 - 5372 270 240 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 3 240 1 242 242 108 32 2e-23 MDLQNKRVLVTGSTQGIGAATALAFAQKGCQVLLNGRRPELPEEIADQLEKIGADYQYFS ADVSDEGAVKQLFKEIGEIDILVNNAGITKDQIMIGMKLADFDQVIKVNLRSSFMLTQKA LKKMLKKRSGAIINMASIVGQHGNAGQANYAASKAGVIALTQTAAKEAAGRGVRVNAIAP GMIASQMTAVLPDEVKEQALSQIPLARFGKAEEVAQAAVFLAENDYVTGQTLVVDGGMTI >gi|300497471|gb|AEAT01000024.1| GENE 7 5403 - 6602 1712 399 aa, chain + ## HITS:1 COG:SP0422 KEGG:ns NR:ns ## COG: SP0422 COG0304 # Protein_GI_number: 15900341 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Streptococcus pneumoniae TIGR4 # 2 398 12 408 411 397 52.0 1e-110 MGAVSPNGNGCQAFVENTLNGVVGIKPIKKFDASETGISVAGEIDDFDVSQVVGKKNGKR MDLYSQYAIQACQEAYEMAGLTPETVKAEELGVIFGSGIGGLTTIEEQVIKMHDKGPKRM SPFFIPMAIANMAAGNISIRFNAKNISTSIVTACASGTNSIGEAYRQIKEGRAEVMITGA SEASVNETAISGFAALTALSTSTDPLKASLPFDQNRHGFVLGEGAGALILESLDHAQKRG AKILAEVVGYGATSDAYHITSPDPKGEGAARAMRLAVEEAGIKPDQVGYINAHGTATKAN DSGEAKAIKEVFGDQVLVSSTKGMTGHLLGAAGAVEAVITCASLEKGILPANVGCFAQDP ECPVKLVKAGNQEQAIDYALSNSFGFGGHNAVLAFRKWA >gi|300497471|gb|AEAT01000024.1| GENE 8 6593 - 7075 416 160 aa, chain + ## HITS:1 COG:SP0423 KEGG:ns NR:ns ## COG: SP0423 COG0511 # Protein_GI_number: 15900342 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Streptococcus pneumoniae TIGR4 # 5 158 1 161 161 90 39.0 1e-18 MGLILEITDVERLLDKFEKSSIREMKLNLDGSELFLSKNEYTQKTEAEAGPVLPAQKAES PLLPKEAAEAAPVVQAEKAASGHAIKSPLVGTIYLQPAADKPAFVKAGDQVKAGQTVCIV EAMKMMTEIKSDVSGTVKEVCVENEDLVECEQTLFLIEEA >gi|300497471|gb|AEAT01000024.1| GENE 9 7077 - 7520 674 147 aa, chain + ## HITS:1 COG:CAC3571 KEGG:ns NR:ns ## COG: CAC3571 COG0764 # Protein_GI_number: 15896805 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Clostridium acetobutylicum # 4 141 3 140 141 171 59.0 6e-43 MTVLDSSQIQEIIPHRYPMLLIDKVIDLVPGESAVAIRNVTNNEAVFQGHFPGNPVLPGV LLVESLAQTGAVALLSADRFKGRTAYFGGIKNAKFRQMVKPGDQVKLEVTLEKVKGHIGL GRGIAWVDGKKACTAELTFMISGEKNV >gi|300497471|gb|AEAT01000024.1| GENE 10 7513 - 8895 1811 460 aa, chain + ## HITS:1 COG:CAC3570 KEGG:ns NR:ns ## COG: CAC3570 COG0439 # Protein_GI_number: 15896804 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Clostridium acetobutylicum # 1 446 1 445 447 503 55.0 1e-142 MFDKVLVANRGEAAVRIIRTLKEMGIKSVAIYSVADRDSLHVQLADEAVCVGASRPSDSY LNIKNIISAATGTGAQAIHPGYGFLSESAEFASLCAACGLTFIGPKAETIDQMGNKEHAR QLMIKHKVPVTPGSRDFIKSPEEAKKVAAEVGYPVLLKAAAGGGGKGIRQVKEPGEMADA FSLAQNEARLDFGNDQMYLEKVLTNVKHIEVQVIRDSFGNCVYFPERDCSLQRRKQKVIE ESPCELISESEREKLGQIAVRAAEAADYLNTGTIEFLMDQDHNFYFMEMNTRLQVEHTVT EMVTGVDLVKAQILVAAGEKLPFKQADLGFKGNAIECRINAEDSSRDFMPSTGQVDYLFL PVGNPGMRIDSALYQGMVVSPFYDSMLAKIIALGSSRQEAVARMQRLLKELVIRGVKTNQ DFHLAILADSEFKQGTFTNTYLEREFLPRWKEQVDKHEAV >gi|300497471|gb|AEAT01000024.1| GENE 11 8882 - 9730 1093 282 aa, chain + ## HITS:1 COG:L0180 KEGG:ns NR:ns ## COG: L0180 COG0777 # Protein_GI_number: 15672761 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Lactococcus lactis # 1 275 1 280 288 301 55.0 8e-82 MRLFKKRNTISERHVKANKRAEDLVPSGLMQRCPNCGLEFFASRLDKYKTCPDCDYGFRL TARERLAWLCEESEEWFKDIQPSDPLHFPNYEAKVAAGKKKTGLNEAVWTGLAKIGGQET ALAIMDPFFIMGSLGQMTGEKLTRLIEAATEKRLPVVVFTASGGARMQEGIYSLMQMAKV VNAVNRHKAAGLLYLVVLTDPTTGGVTASFASEGDITLAEAHAMVAFAGRRVIEQTIHEQ LPKDAQRAETVLKHGFIDRIVLRQEEKETLAWLLKYGGMQDD >gi|300497471|gb|AEAT01000024.1| GENE 12 9723 - 10490 1124 255 aa, chain + ## HITS:1 COG:L0190 KEGG:ns NR:ns ## COG: L0190 COG0825 # Protein_GI_number: 15672762 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Lactococcus lactis # 6 255 19 260 260 245 52.0 5e-65 MTDAMETVRAARASDKLSAHYLRAHLFSDFVELHGDRQGADDPAIVGGIGLFAGQPVTVI TTSRGHKLEERLAKHFGQPEPAGYRKAARLVKDAARFKRPVLLFIDTAGAFPGKEAEYAG QGQAIAQCLTDIGQAETPIISVIFGEGGSGGALALACGDELWMMENSMYSVLSPEGFASI LWKDASRAAEAAELLGLTPESLLKGQVIEGVIKQEGSKSAQCREIARVLEEELAKLQKLP VSSLLNRRYERFRKF >gi|300497471|gb|AEAT01000024.1| GENE 13 10500 - 11264 1212 254 aa, chain + ## HITS:1 COG:L161132 KEGG:ns NR:ns ## COG: L161132 COG0623 # Protein_GI_number: 15672548 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Lactococcus lactis # 5 254 3 250 250 274 58.0 9e-74 MAGILAGKKFLVMGVANKRSIAWGCAEQIKAQGGEVVYSYQNDRLEKSLLKLGLAEEEMV ECDVASDESIDAAFDQVKEKFGQIDGLVHAVAFAPKNELEGSILNSSREGYLTAQNISSY SLIAVAKAAQEKELLAPKASIVTLTFIGSERAIANYNTMGIAKAALESSVRYLARDLGKT GSRVNAISAGAMKTLAVTGIGGHKDLLEQSRSLTVDGVNVSLEELGNCCAFLLSDLSTGL TGDIIYVDKGVHLS >gi|300497471|gb|AEAT01000024.1| GENE 14 11274 - 11939 515 221 aa, chain + ## HITS:1 COG:L0191_2 KEGG:ns NR:ns ## COG: L0191_2 COG0340 # Protein_GI_number: 15673762 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Lactococcus lactis # 2 220 1 242 242 121 35.0 1e-27 MEIYCYLVLPSTQDLAKKLLEKKKPPFAVSALEQTQGYGKQGRAFYSPKNGLYLSVCLEK QENPLLTLAVGTAVADFLRARYGLEIGLKWANDLFYQGKKVAGILTEQVAGGIVVGLGLN LGAELPASLPQATRLLEAGDFDPLLADDLACVICRAASWQDCLPRYRELSILTGRRVTLK IAGRTISGTCAGFDDQGRLLLEKGGKISAWSSGEVIKTSFL >gi|300497471|gb|AEAT01000024.1| GENE 15 12181 - 12813 979 210 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0834 NR:ns ## KEGG: LDBND_0834 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 5 210 1 206 206 282 100.0 6e-75 MEDVMKKKVLLIAFAALALTACSSKKATTDSESDKKAASSISSSNVVKQTSNKINLTNYK KIKVVEKTGSTPSQVTDLLGREADAKSKAKTSKLKATIYTWEGVQNGSAGANLAVEFANG VAIAKQISGLVVNRSKQITPKDYKSLKKGMTQEEVEAIVGKPNGYSESDYSNSDVALWLY TSGLKSDGQANFYVTFQKNKLVAKKAQNFN >gi|300497471|gb|AEAT01000024.1| GENE 16 12959 - 13165 68 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MALIFAGLTDRQESNEKILGYLKKAGLSASFALPAARVLIKDLVKSRQQLIGSGILVTEG SRLDGNCP >gi|300497471|gb|AEAT01000024.1| GENE 17 12980 - 13348 63 122 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0835 NR:ns ## KEGG: LDBND_0835 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 122 1 122 122 203 98.0 2e-51 MRPVPSRAGDDKVFEGSIINVISDIALALAKAAKSTLQGHPAGCLLLDLPLAELLALIRA FLGAIAVKPAPFCYQDAASDQLLAAFHQVFDQHPGGWQGERCRKASFFEVAQDLFIAFLS VG >gi|300497471|gb|AEAT01000024.1| GENE 18 13603 - 13825 423 74 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0836 NR:ns ## KEGG: LDBND_0836 # Name: nirC # Def: formate/nitrite family of transporter # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 74 1 74 256 107 94.0 1e-22 MYKESFAAAASAAQKKFNLLKTNPAGYVVLSILAGMYIGFGILLAFMVGGQLGTNPAANL IKGLIFGVALSLVV Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:10:44 2011 Seq name: gi|300497466|gb|AEAT01000025.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00095, whole genome shotgun sequence Length of sequence - 3835 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 4, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 694 1059 ## COG0475 Kef-type K+ transport systems, membrane components + Term 698 - 734 8.0 - Term 681 - 725 13.2 2 2 Tu 1 . - CDS 780 - 1436 963 ## COG1266 Predicted metal-dependent membrane protease - Prom 1469 - 1528 6.8 + Prom 1431 - 1490 6.7 3 3 Tu 1 . + CDS 1529 - 2629 1513 ## COG1434 Uncharacterized conserved protein + Term 2641 - 2673 3.3 + Prom 2749 - 2808 4.6 4 4 Tu 1 . + CDS 2835 - 3834 1697 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein Predicted protein(s) >gi|300497466|gb|AEAT01000025.1| GENE 1 2 - 694 1059 230 aa, chain + ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 1 225 157 376 379 129 40.0 6e-30 AVVVLSLFTSFSHEGGKSGLTNNFFLNLLFEALYFVFVWLVYKFIAPKFMQLAEKINVSY SVVIASLILSLGMAYIAELVGLSAVVGAFFGGLAIRQTKQEAEVNSSVSAIGYSVFIPTF FVNIGLSMTFASIGQDFLFIVVMTVLGVLSKYWAGKYSSEIFGLKPLEGSIVGAGMVSRG EVALIVAQIGIAHHLFPKDIYSSLILVIILTTVLSPIMLNHYIRKDEAQN >gi|300497466|gb|AEAT01000025.1| GENE 2 780 - 1436 963 218 aa, chain - ## HITS:1 COG:lin2176 KEGG:ns NR:ns ## COG: lin2176 COG1266 # Protein_GI_number: 16801241 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Listeria innocua # 85 217 92 220 228 59 30.0 5e-09 MKKIGHYLFYLIEIAIVFALYTTLQEFYFYPDIFGFGSAEAFILALSTVLVFWFSFWLYK GQLDDDNDWGFSQDFHWDWRKLATAVGGFFLMQLLYILLMNLIGGGVSVNQQNLDDLQQT AGPTYNIMVVLVAPVMEEIIFRGMFFNLLFNHAGKVAKWAGILVSGFFFAFAHNPFWSPY LLVYWMMGSVLAWVYMTTKDLRYSMATHIMWNMLSILG >gi|300497466|gb|AEAT01000025.1| GENE 3 1529 - 2629 1513 366 aa, chain + ## HITS:1 COG:lin1003 KEGG:ns NR:ns ## COG: lin1003 COG1434 # Protein_GI_number: 16800072 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 32 359 14 338 344 166 34.0 8e-41 MPSGLNTLLFLFSQNRAFSYFTILVAIAAVTFIFSWLSDPRRLINGVFFTFFIASLGAWF TFLVYATNLPSFRKVYLWALAILAVTVAVIVSFSWILLLWNSYVVLKHESHTLPNLLTLI LAGAMLGLWVFIFIGHFTRSTPTGLRLILDIFPTVAVYLAAVMYNFLVNLLLYQIVPRRY QQNYLIVLGAGLIHGDQISNIQAARINRAIQFAYHQQEKGQPLPKFIMSGGQGPNEKISE AAAMAAYAIKRGVPKELILLEDQSRNTEQNMEFSQIVAYNDYGNDNFKACFFTSNYHVFR SAIYAKRAGLDANGIGSYTRPYYLPNAVLREFAGMFVMNRLRHFTVMALIVAGYIALAIC KLLNVF >gi|300497466|gb|AEAT01000025.1| GENE 4 2835 - 3834 1697 333 aa, chain + ## HITS:1 COG:lin1425 KEGG:ns NR:ns ## COG: lin1425 COG1744 # Protein_GI_number: 16800493 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Listeria innocua # 1 332 1 325 357 248 44.0 1e-65 MKKIKFKQVLATGTVLAAGIALTACSGAKQNGGGSNKKSSASVALITDIAGVDDHSFNQS GWEGMVAYGKSQGLKRGTNGYQYFESSSASDFTPNINQAVAAGYKTIFGVGYSLKGAIAS AAKKHTDKNFVIIDDVIKGQKNVASANFKSQDASYMAGVVAARTTKTNVVGFIGGVHGDI VDLFDAGFAKGVQDTAKKMGKKITILNQYVGSFTAADKEKSIAKAMFAKKADVIFHASGS AGQGLFSEAKSVNEGLAANSSKKVWVIGVDSDQSNLGKYKSKGGKKSNLCLTSVMTGVNV AVKDIATKAAKGKFPGGKQLVYGLKHNGVYLTR Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:10:47 2011 Seq name: gi|300497459|gb|AEAT01000026.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00039, whole genome shotgun sequence Length of sequence - 6068 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 17 - 93 69.0 # Asp GTC 0 0 + Prom 20 - 79 79.8 1 1 Op 1 8/0.000 + CDS 297 - 671 342 ## COG1725 Predicted transcriptional regulators 2 1 Op 2 . + CDS 658 - 1563 1249 ## COG1131 ABC-type multidrug transport system, ATPase component 3 1 Op 3 . + CDS 1535 - 3313 1494 ## Ldb1713 hypothetical protein + Prom 3328 - 3387 8.1 4 2 Tu 1 . + CDS 3421 - 4809 1731 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 4826 - 4860 5.3 + Prom 4916 - 4975 4.7 5 3 Tu 1 . + CDS 5030 - 5866 1478 ## COG1912 Uncharacterized conserved protein Predicted protein(s) >gi|300497459|gb|AEAT01000026.1| GENE 1 297 - 671 342 124 aa, chain + ## HITS:1 COG:lin1836 KEGG:ns NR:ns ## COG: lin1836 COG1725 # Protein_GI_number: 16800903 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 10 108 9 108 122 81 41.0 3e-16 MDFIDYLDSRPIYQQIADRYKQLILTGVMLPDEQLPSVRKLAMELSTNPNTVQKAYAALE REGYVYSVKGRGNFVRANETLKSKQKEELKGKMIDLIKEIQAVGLDPQELFAEAMEEAAE DDRD >gi|300497459|gb|AEAT01000026.1| GENE 2 658 - 1563 1249 301 aa, chain + ## HITS:1 COG:BS_ytrB KEGG:ns NR:ns ## COG: BS_ytrB COG1131 # Protein_GI_number: 16080097 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus subtilis # 1 287 1 285 292 150 29.0 2e-36 MIEIDALSKDYGQTEAIKNLNLTIEEDRVFGLIGTNGAGKSTLLRMIAGILRPTSGHITI DGLPVYDNPAAKKKLCFIPDDPYFFPNATAESMARDYAAVYQDFDQERFARLLADFRLEP KRRIHDYSKGMKRQLAILLGLCTNTKYLLLDEVFDGLDPVMRQSMKSLFAEDMDRRQLTP IIASHNLRELEDICDHIGFLHSGGLLLSEDLVDMKLEIQKLQCVFKDDRDMEEVLGKLKL VDHSNRGRLHTLVVRGNRSEVEAVFDHVPMTFFEILPLTLEEIFIAEAEAVGYDTRKLIL K >gi|300497459|gb|AEAT01000026.1| GENE 3 1535 - 3313 1494 592 aa, chain + ## HITS:1 COG:no KEGG:Ldb1713 NR:ns ## KEGG: Ldb1713 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 592 9 600 600 1059 97.0 0 MTRANLSLNKHGLSQKEILRHRKVPVVLAILVMAMFYIVGPILVLISNKDVETASLLHDA RTYYIFQNTSMSAAMAGIFGIYLAFEGFRFLHVPRQVDYYESQPVSRKTRFIGITVNSLL IYSLLYLLFFLAGMLTLAAGGANFLADGEVWRGFLADLFAFSAWYAIASLSMMITGNTFV AGLATIFFSCFEFGLIFLNSIFYSTLATTAGYDNHYWLAYTNPSTQVYNSNHWLGIGINL LWTVLYLALAYWAYQKRANEKAGGAVAFAWLEQVVKIILVVYFAAIGGIFGYMMVNLNFA CGIIGALIIGLITASLMEIIYKFDLAAWKHNFVQSLLLTVAGLAILAGMVWGAKRYDDWL PASKQVASVAISRDDGIYTNYYMGKKSAKGDASDYAAKYMYLPVNSDLINLVKAGSKFTQ NRSHEREDSVQMRFVFRMKNGRVKTRVYDVDRKTLKKYFEPISKTKAYKQAYFQIYHDQM IMDNLDSVSFTYTNGKETIKRQDSQLYKDFRAAYKQDLAKWDYQQASLQKPIGQVAVSWT RANGKRAKIYYPVYSNYSQTIAFLKKNKLYSAKKVKLEYQQPLDFYLEDQFG >gi|300497459|gb|AEAT01000026.1| GENE 4 3421 - 4809 1731 462 aa, chain + ## HITS:1 COG:SPy1654 KEGG:ns NR:ns ## COG: SPy1654 COG1113 # Protein_GI_number: 15675525 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Streptococcus pyogenes M1 GAS # 5 448 10 453 459 429 50.0 1e-120 MAKRHENADGTLRSLSNRHVQMIAIGGTIGTGLFLGAGSTISATGPSVILIYAFMGVFFF FMLRALGEMFYSDPNHHTFVSFITKYLGPAAGNFAGWSYWIGLLFACMAELTAVGTYFQY WFPHAPLWLVELIFLGALTLLNLTAARLFGETEFWFAMIKIIAIISMILTGVFLVATHVK TPVGYASLTSLTKNFKLAPNGTYAFFTAFPMVFFSFAGIEFVTITIGEAEDPHQVIKKAV NETLLRILIFYIGTLTVIMCVVPWRSVSASSSPFVQVFQLAGFTTAASVLNFVVLTSAAS ALNSTIFSAGRHFFQLAQEAKKGSWLKEKFAKIAPNGVPARGIAISVLFALIAPILSFSN TAIEAFSMVAGATSDIFILVYVLALLAHRKYRKSSDFMEDGFKMPFYQVTSPLTIAFFLV IFFSLFFVKADIFGASLATAWAVFFGSFCYFHQRVKDKRAGK >gi|300497459|gb|AEAT01000026.1| GENE 5 5030 - 5866 1478 278 aa, chain + ## HITS:1 COG:SA2478 KEGG:ns NR:ns ## COG: SA2478 COG1912 # Protein_GI_number: 15928272 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 2 275 5 278 282 375 66.0 1e-104 MLVLQTDFGLVDGAVSAMHGVAHTVASDIQVSDLTHEIPPYDIWNASYRLYQTIKYWPAD TVFVSVVDPGVGSARRSIAVKTKSGHYVITPDNGTLTHIYKYEGVEAVRVIDENKNRLPH SQESNTFHGRDVYAYNGAMLASGQVAFEELGEDVPVDSLVTLPVIEPRLQGDTAVGTIDV LDVRFGSLWTNIPLEMVKELSIDRGDSLLVTILHQNVAVYQEHIPFVRSFAEVNLGQPLV YINSLVNIGIALNQESFAAVHHIGTGTDWQVKISKVNK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:10:56 2011 Seq name: gi|300497456|gb|AEAT01000027.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00260, whole genome shotgun sequence Length of sequence - 860 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 + CDS 3 - 458 290 ## COG2826 Transposase and inactivated derivatives, IS30 family 2 1 Op 2 . + CDS 455 - 811 93 ## COG2826 Transposase and inactivated derivatives, IS30 family Predicted protein(s) >gi|300497456|gb|AEAT01000027.1| GENE 1 3 - 458 290 151 aa, chain + ## HITS:1 COG:BH2524 KEGG:ns NR:ns ## COG: BH2524 COG2826 # Protein_GI_number: 15615087 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Bacillus halodurans # 50 146 102 197 314 58 37.0 5e-09 RSECGRKSLFLRRHKFIDYVSHCFHNQGWSLDACVGYALAKGIFQKDQVVSTKTLYNYVD LGLMDIKNGDLPEKVKRNTKTRRARVNKRILGRSIDERSPRIESRKDFGHWECDLVLGHK TKDDDVLLTLCERKTRQFFMIKMRIRPQLAL >gi|300497456|gb|AEAT01000027.1| GENE 2 455 - 811 93 118 aa, chain + ## HITS:1 COG:SP0915 KEGG:ns NR:ns ## COG: SP0915 COG2826 # Protein_GI_number: 15900795 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Streptococcus pneumoniae TIGR4 # 21 107 232 314 331 83 49.0 1e-16 MKAFDKLREYYGSKWNQIFKSITTDNGSEFADLSDLEQVSKTLVYYAHPYTSCDKGSVER HNGLIRRYIPKGDRMDKYSVEDIAKIEVWCNSLPRKILNYKTPEEYFDTELDRIYRRR Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:10:57 2011 Seq name: gi|300497454|gb|AEAT01000028.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00181, whole genome shotgun sequence Length of sequence - 1409 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 16 - 1408 1817 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Predicted protein(s) >gi|300497454|gb|AEAT01000028.1| GENE 1 16 - 1408 1817 464 aa, chain + ## HITS:1 COG:L0199 KEGG:ns NR:ns ## COG: L0199 COG0028 # Protein_GI_number: 15674026 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Lactococcus lactis # 1 464 1 461 567 454 47.0 1e-127 MAKIKGANAVLDVMYKWGIDHLYGFPGGSFDSTMNAIYEMQDKVKFIEVRHEEAGALAAS AEYKLTGKLGVCMGSAGPGAIHLMNGLYDAKYDKTPMVALVANVPTPRQDINFFQAFDEM PWFRDVAVWVHQAKTKEALPVLMDTAIRQAYAKKGPAVLVIPKDFGWQEIEDNYRVSASN HVADNYAAPTAESIEAATKLIKEAKNPVVYFGLGASAAADELKEFADKFKMPMMSSYLGK GIVEDSFKPYLGTIGRIGGKAPNEVQGHTDLVVWVGNNSPFSVLWFPKNAKVIQIDVDPE KQGKRHSVDVSILADAKKSLRALINAGEAREESPLYKAALADREEWDAWTASFADDHLKD EGRVRQEPIWDVINKEAADNAVFAIDVGNVNMDHARLLNMNGKQRWTTSGLYATMGYGSP AAIAAATAMPDREVWHLAGDGGFAMMSQELLTLARYNMHVLTVV Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:11:05 2011 Seq name: gi|300497425|gb|AEAT01000029.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00085, whole genome shotgun sequence Length of sequence - 25466 bp Number of predicted genes - 28, with homology - 28 Number of transcription units - 12, operones - 7 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 29/0.000 + CDS 19 - 612 966 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 2 1 Op 2 1/0.250 + CDS 627 - 1637 1295 ## COG2255 Holliday junction resolvasome, helicase subunit + Prom 1643 - 1702 3.1 3 1 Op 3 . + CDS 1726 - 2121 509 ## COG1862 Preprotein translocase subunit YajC + Term 2127 - 2165 4.2 + Prom 2131 - 2190 7.7 4 2 Op 1 . + CDS 2214 - 3662 2018 ## COG0364 Glucose-6-phosphate 1-dehydrogenase 5 2 Op 2 . + CDS 3662 - 4777 1188 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 6 2 Op 3 . + CDS 4840 - 5799 673 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B 7 2 Op 4 1/0.250 + CDS 5792 - 7153 2128 ## COG0513 Superfamily II DNA and RNA helicases + Prom 7236 - 7295 5.9 8 3 Op 1 4/0.000 + CDS 7392 - 10025 4419 ## COG0013 Alanyl-tRNA synthetase 9 3 Op 2 6/0.000 + CDS 10091 - 10348 513 ## COG4472 Uncharacterized protein conserved in bacteria 10 3 Op 3 7/0.000 + CDS 10348 - 10776 450 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 11 3 Op 4 . + CDS 10779 - 11102 519 ## COG3906 Uncharacterized protein conserved in bacteria + Term 11107 - 11141 2.7 12 4 Op 1 3/0.000 + CDS 11166 - 13529 3870 ## COG1193 Mismatch repair ATPase (MutS family) + Prom 13538 - 13597 2.7 13 4 Op 2 . + CDS 13623 - 13934 570 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 13953 - 13989 8.0 - Term 13941 - 13975 7.6 14 5 Tu 1 . - CDS 14016 - 14420 591 ## LDBND_1509 hydrocarbon binding protein, v4r domain - Prom 14443 - 14502 8.8 + Prom 14552 - 14611 7.6 15 6 Tu 1 . + CDS 14650 - 15270 340 ## PROTEIN SUPPORTED gi|71274727|ref|ZP_00651015.1| Ham1-like protein + Term 15284 - 15315 2.5 16 7 Tu 1 . - CDS 15312 - 16163 1219 ## COG0668 Small-conductance mechanosensitive channel - Prom 16187 - 16246 3.3 + Prom 16138 - 16197 5.7 17 8 Op 1 . + CDS 16293 - 16712 541 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain 18 8 Op 2 . + CDS 16735 - 17103 571 ## LDBND_1505 hypothetical protein + Term 17144 - 17178 -1.0 19 8 Op 3 . + CDS 17194 - 17439 336 ## Ldb1595 hypothetical protein + Term 17448 - 17504 14.6 - Term 17441 - 17485 9.1 20 9 Tu 1 . - CDS 17503 - 18609 1940 ## COG0006 Xaa-Pro aminopeptidase - Prom 18636 - 18695 7.4 + Prom 18669 - 18728 5.7 21 10 Tu 1 . + CDS 18762 - 19763 1757 ## COG1609 Transcriptional regulators + Term 19776 - 19809 5.2 + Prom 19790 - 19849 4.7 22 11 Op 1 . + CDS 19870 - 20202 521 ## Ldb1592 hypothetical protein 23 11 Op 2 2/0.250 + CDS 20217 - 21629 1761 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 24 11 Op 3 1/0.250 + CDS 21595 - 22155 612 ## COG4470 Uncharacterized protein conserved in bacteria 25 11 Op 4 3/0.000 + CDS 22152 - 22922 795 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 26 11 Op 5 . + CDS 22919 - 23524 624 ## COG4478 Predicted membrane protein + Term 23554 - 23602 10.1 - Term 23548 - 23581 3.1 27 12 Op 1 . - CDS 23596 - 24255 1123 ## COG0586 Uncharacterized membrane-associated protein 28 12 Op 2 . - CDS 24290 - 25273 1219 ## COG0492 Thioredoxin reductase - Prom 25334 - 25393 5.4 Predicted protein(s) >gi|300497425|gb|AEAT01000029.1| GENE 1 19 - 612 966 197 aa, chain + ## HITS:1 COG:BS_ruvA KEGG:ns NR:ns ## COG: BS_ruvA COG0632 # Protein_GI_number: 16079826 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Bacillus subtilis # 1 196 1 201 201 176 46.0 3e-44 MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAYKDGDKARIYVEQVVRENGMTLYGF KSQQDKVLFNKLNEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKTASQ IVLDLRGKMGNYVAENLFTEDEPVKSVFPALEDALLALGALGYSQKEVDRIKPKLKKLPE MSADEYIKQGLGFLLKK >gi|300497425|gb|AEAT01000029.1| GENE 2 627 - 1637 1295 336 aa, chain + ## HITS:1 COG:SPy0038 KEGG:ns NR:ns ## COG: SPy0038 COG2255 # Protein_GI_number: 15674280 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Streptococcus pyogenes M1 GAS # 15 330 13 328 332 400 63.0 1e-111 MTEEHLTSQEAAEGEEAVELSLRPQLLSQYIGQGHVKKDMEVYIQAARQRDEALDHVLLY GPPGLGKTTLAFVIANESGVSLKSTSGPAIERAGDLVALLTDLEPGDVLFIDEIHRLAKP VEEVLYSAMEDFYIDIVVGEGQTTHAIHLPLPPFTLIGATTLAGQLSAPLRDRFGIVEHM QYYQVEDLEKIILRSSEVFHTKISPQAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKE ISLETTAMALKQLQVDSAGLDQTDRKLLRTMILSYGGGPVGIRTLASNIGEDRETIESLY EPYLLQNGFIVMTPRGRVVTQKAYQQLNLPLPGEEE >gi|300497425|gb|AEAT01000029.1| GENE 3 1726 - 2121 509 131 aa, chain + ## HITS:1 COG:SP2029 KEGG:ns NR:ns ## COG: SP2029 COG1862 # Protein_GI_number: 15901850 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Streptococcus pneumoniae TIGR4 # 16 109 4 96 99 70 41.0 6e-13 MNTFALAAANSGAGSSIFMLVMLAALFGFTYFTMIKPQKKQQQQRQEMMNQLKKGDSVEM VDGLRGKIDSINDADKTIVLDADGIYLTFSRLAVRTVLKQADASEAEAAKPAEEKAEAAK TEEAEDKDSQE >gi|300497425|gb|AEAT01000029.1| GENE 4 2214 - 3662 2018 482 aa, chain + ## HITS:1 COG:SP1243 KEGG:ns NR:ns ## COG: SP1243 COG0364 # Protein_GI_number: 15901104 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 7 469 6 469 495 429 46.0 1e-120 MNNIPTVMILFGGSGDLAHRKIYPALFNLYRRNVIHDNFAVIGTARRPWSHEYLREQVAQ AVHESWEEVDEAQLTEFASHFYYQSHDVTNVEHYVTLKQLAQELDERYECGGNRIFYMAM APSFFGTIAEHIADQHLTGTGFNRLVVEKPFGTDLASAEVLNQQIRNSFAEDQVFRIDHY LGKEMVQNILPLRFGNSLFKRIWNADAVKNVQVTLAERLGVEARGGYYNNSGALRDMAQN HIMQIITLLAMPEPKDLSDKAIHAAKEDLLASLVIPDEKAVSENIIRGQYLGTETTFEYV KEPNVAEDSKTETYVAGRLEFSKGPLAGVPVYFRTGKEMREKKTRVDVVFKDEAGLYGDK AKTNVLTIEIDPVNQVYFRLNGKNVAGGDLRLERFCYRYSEDEQAEVPDGYERLIHDVFV NDSTNFTKWEELKQYWRFVDAVEAAWQKQNATGEKPVKYRPYGMGPDTSKIFADPEDGWI YK >gi|300497425|gb|AEAT01000029.1| GENE 5 3662 - 4777 1188 371 aa, chain + ## HITS:1 COG:SP0458 KEGG:ns NR:ns ## COG: SP0458 COG0389 # Protein_GI_number: 15900374 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Streptococcus pneumoniae TIGR4 # 13 353 2 340 344 270 42.0 4e-72 MADIDLLPRNDFSRRIIHLDMDAFYASVEMRDRPELANKAVVIAQDPRKTGGHGVIATAN YRARKYGVGSAMAAAQAVKLIPAEELVFVEPDFVKYHRVSGQVHGLMHELTDQIESVALD EAYMDVTRSKIPGKSALELASYLQEQIFRQLHLTSSFGVSYNKFLAKMGSEYAKPFGRTY LAPDRAQDFLDRQEIKRFPGIGKKTQERLKEAGVLTGRDIRNYGLSRLLKDYKKSGYYMA LHAYGIDLSPVQASRQRKSLGKERTFEPVIYDPDRADAYLKDFSQTVAAELKERNLLARV VVLKVRDRNFKTITRRQQIQPTSDPEVFYQLAKELLAREPEFLVEGIRLLGLSAGELEEK HYQEISLFADE >gi|300497425|gb|AEAT01000029.1| GENE 6 4840 - 5799 673 319 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 1 312 1 310 311 263 44 6e-70 MNTFDEIFSKIKQYPTIILHRHTNPDPDAIGSQAALAKSLRLQFPDKKILCTGENDVGNL DWINTMDEVKDEDYQGALVITTDTANTPRISDQRYRLGDYLIKIDHHPDVDPYADMSYVD SKAAATCEIIADFIEAEGLPLTQEIALALYAGIIGDTGRFMYDATSAHTFEVVSRLMETG IDISQIARNESEVTFQQAKLQSLALEKMQLDESGLVAIAVISQADLKALGVTQPQASVTV STPGRIKGILTWLVIVEKEDGTYRVHYRSKGPHIHKLAEAHDGGGHELASGATAHDQVEI DQIFQELVEVTKKYKEDHE >gi|300497425|gb|AEAT01000029.1| GENE 7 5792 - 7153 2128 453 aa, chain + ## HITS:1 COG:SP0761 KEGG:ns NR:ns ## COG: SP0761 COG0513 # Protein_GI_number: 15900655 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Streptococcus pneumoniae TIGR4 # 5 447 3 445 447 377 47.0 1e-104 MNNIFTDTRLRSEIRQGLAKIGFTKPTPVQEKVIPAMLKGESVIVQAATGSGKTHAYLIP ILNAIDEDARYVQAIVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARF EQNKPQLVIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDV VMSAFSATIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKIVYKLLT MGQPYLALVFANTKQMVDELADYLTKQGLKVAKIHGGITERERKRTLREVRAGQYQYVVA SDLAARGIDLPGVNLVINYEIPKDLEFIIHRIGRTGRNGLPGHAVTLVREEEMNRVGALE HMGVHFDFVEIKDGALAPRTHYRRRDNRTAANRQLDPHMKGVVKKVKSKRKPGYKKKIKQ AIQEDNRKKRKIEARHEMRHQKRLRKRKREQKR >gi|300497425|gb|AEAT01000029.1| GENE 8 7392 - 10025 4419 877 aa, chain + ## HITS:1 COG:lin1539 KEGG:ns NR:ns ## COG: lin1539 COG0013 # Protein_GI_number: 16800607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Listeria innocua # 1 870 1 868 879 943 56.0 0 MKKLNSSEFRQMFLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKN RRITSSQKSIRTNDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPDWLDL DKDKLYVTVYPKDTEAHRIWHEVVGLPESHIVQLEDNFWDIGEGPCGPDSEIFYDRGQEN NDVPEDDPENYPGGENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLERVLSILQ DAPTNFETDLFLPIIHATEEMSAGKKYGANKADDISFKIIADHIRAISFAIGDGALPGNT GRGYVLRRLLRRAALNGRKLGIDGAFLYKLVPVVGDIMKSHYPEVSDQAEFISKVVKNEE DRFGATLEAGLTLLDDLIDKAENSEDKTISGKDAFKMFDTYGFPYELTVEAAEDKGLKVD KDGFDAEMEAQKERARKARGNLQSMGSQDETLMKIKDKSVFEYGVYEEESQLVDIIVDDK LVDKADGEKATLIFDKTPFYAERGGQVADHGDIYDQEGNLVARVVDVQHAPNDQNLHFVD VVLPLVKGQTYKLKIDRARREGLRHSHSATHLLHAALRQVLGEHTHQAGSVVEPDYLRFD FTSLDPITPRELKNVEKIVNEKIWEAIQVKTTETDPETGKKMGALALFDGKYTDKVRVVQ MDDFSIEFCGGTHCDNTSQIGVFKIISEQAIGAGVRRIEAVTSKLAYEYLASRSDILDQI QAQVKATKADGIQSKIASLQEELRSAEKQNAAYEAQINASKAGKIFDQVKTVGDLTVIAT IADVKGMNDLREIADQWKSEGKSDVLILGAKSEDKANMLISLGQKALDKGLKAGDLIKSV AAIFGGGGGGRPNMAQAGGKKPEGLQDAIDAAVSQLD >gi|300497425|gb|AEAT01000029.1| GENE 9 10091 - 10348 513 85 aa, chain + ## HITS:1 COG:BH1268 KEGG:ns NR:ns ## COG: BH1268 COG4472 # Protein_GI_number: 15613831 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 85 1 86 90 106 66.0 1e-23 MSSLDKTMHFDFNQNKGKNIRDTLEDVYKALEEKGYSPINQIVGYLLSGDPAYIPRHNDA RNLILKHERDEIIEELVKSYLGKDK >gi|300497425|gb|AEAT01000029.1| GENE 10 10348 - 10776 450 142 aa, chain + ## HITS:1 COG:SPy2113 KEGG:ns NR:ns ## COG: SPy2113 COG0816 # Protein_GI_number: 15675863 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Streptococcus pyogenes M1 GAS # 1 137 1 136 139 151 55.0 4e-37 MRLLGLDVGSKTIGVAVSDPLGITAQAVMTIPIDEDRHNFGMRSLKKLVREYEADGFVLG LPKNMDGTAGRSVSRSKAMGERLEQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQRK EVVDQMAAVLILQNYLDLQRKE >gi|300497425|gb|AEAT01000029.1| GENE 11 10779 - 11102 519 107 aa, chain + ## HITS:1 COG:BS_yrzB KEGG:ns NR:ns ## COG: BS_yrzB COG3906 # Protein_GI_number: 16079792 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 8 98 2 90 93 63 45.0 9e-11 MAFEVSAEDQDRQLTLIDEDGNEELFEVLFTFHSDDNDKSYILLYPAAVEDDDEIEVQAF SYDADEDGDVTSSDLHEITSDAEWDMVQGVLNTFLEDDRLSGDDSAE >gi|300497425|gb|AEAT01000029.1| GENE 12 11166 - 13529 3870 787 aa, chain + ## HITS:1 COG:BH3106 KEGG:ns NR:ns ## COG: BH3106 COG1193 # Protein_GI_number: 15615668 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus halodurans # 5 787 3 785 785 598 44.0 1e-170 MMNHKILDILEYQEISSRLAEQAVTAPAKSKALNLQPASDRETVSRALSETKALVDLDRI KGQLPLTDFQDVAPSLKRLKVKADLNALELGNILLIFTLAQESSRFVEDAEENETLDLAA IETLLEDLELPDDLYRRLRTSLTYDGEVLDTASADLARLRHGRLATEAEIKEKMTAYTRG KNGQYLSEQIVTIRDDRYVIPVKQEYRYKFGGVVHDQSASGQTLFVEPAAILPLNNRLQN LLAEERQEIHRVLHELSLDAREEMEAIKRVAAALSELDFLQAKAKLAKQMRASQPTLSAD QSFKLLGARHPLIDPDKVVANDIALGQDFDTILITGPNTGGKTITLKTAGLLQLMAQSGL FIPANEGSSVAVFDQIFADIGDEQSIEQSLSTFSSHINDIVAIMKRVSDQSLVLIDEIGA GTDPEEGASLAISILDFFRKKGAKIIVTTHYPELKLYGYNRERTTNASMEFDIKTLSPTY RLQMGIPGHSNAFAIARRLGMREDVVVGAEKLMSSDDSDINHMIDELNKQTKLATENKQK LQTSLDRAKQLEKKLQDALDIYNQRVQKQLDFALDRANEIVAKKRKKADKIIAELEEARK EGMQIKTNQLMDAKGEFNQLAKQEANLAKNKVLQKEKKRHHVQVGDKVKVLSYGQTGTVT KQLGEHDYEVSLGRIKLKVTDRDIDKLATGQKQQAQRRATSASRSSRARSSLDLRGQRYE EAMVNLDRYFDTILLSGLSTVTIIHGIGTGAIRQGVQQYLKRNKHVKTYSYAPANEGGTG ATIVTLK >gi|300497425|gb|AEAT01000029.1| GENE 13 13623 - 13934 570 103 aa, chain + ## HITS:1 COG:lin1196 KEGG:ns NR:ns ## COG: lin1196 COG0526 # Protein_GI_number: 16800265 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Listeria innocua # 1 101 1 102 103 137 63.0 7e-33 MVDAITDATFEEETKDGLVLVDFWATWCGPCRMQSPVIEALAEERQDVHFTKMDVDDNPE TAKNFGIMAIPTLLIKKDGQVVDRLTGYTPKEKLNEILDQYAD >gi|300497425|gb|AEAT01000029.1| GENE 14 14016 - 14420 591 134 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1509 NR:ns ## KEGG: LDBND_1509 # Name: not_defined # Def: hydrocarbon binding protein, v4r domain # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 4 134 1 131 131 250 99.0 2e-65 MRIMSEHNDHVYFVNQLYRDFLLPTILGGDTPAILYWAGKRITRKYALSEFEDLSEFFKM AEFGNLTIVKERRSSVIFSLSGQPISDRLAAGSREFSLESGMIAEAVEQNRGRSAEAEIA IDDKKETVQITAFF >gi|300497425|gb|AEAT01000029.1| GENE 15 14650 - 15270 340 206 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|71274727|ref|ZP_00651015.1| Ham1-like protein [Xylella fastidiosa Dixon] # 1 203 1 200 200 135 38 3e-31 MTQVLLFATDNQNKVKEVQEAFKQAGLDIELKSNADLDNPPYVNEKGTTFEANAKLKAHA LADYSKLPTLADDSGLQVAKLNGAPGVHSARYGGEAHNDARNNAKLLAALGGVPQDERQA KFVTTLVLTMPGHEDKDLVVTGTCEGEVLAVPRGKDGFGYDPLFYVPSKGKTFAEMTTEE KNEVSHRGKAVKALIEELPAWLAQFN >gi|300497425|gb|AEAT01000029.1| GENE 16 15312 - 16163 1219 283 aa, chain - ## HITS:1 COG:SPy1897 KEGG:ns NR:ns ## COG: SPy1897 COG0668 # Protein_GI_number: 15675710 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Streptococcus pyogenes M1 GAS # 22 263 17 262 281 154 36.0 1e-37 MKNLDFKIAGISVDVDKLFTSGVTILWKLLISTLVFYLVSHFGRKIIKRYLDKHNDKLVL SKRSQTISALVNSLFHYTMVFFYVYSILTILGIPVGTLIASAGIFSLAIGLGAQGFMSDL VNGFFILSEGQYDVGDNVEIGTEAGTVTQLGLRTTQIVTTDGTLIFIPNRQISIVRNLTH GGIGLNLDLNLDADTDLKQLASLLDQADEDLLAWHDKLVSGPTQIGVIGQQGQTITYRVH FQVKPGFEGKIRQAYWQTYLQYLRVNQVKFGQEPVIINNSKKA >gi|300497425|gb|AEAT01000029.1| GENE 17 16293 - 16712 541 139 aa, chain + ## HITS:1 COG:L6768 KEGG:ns NR:ns ## COG: L6768 COG4768 # Protein_GI_number: 15672602 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Lactococcus lactis # 6 135 2 125 139 70 41.0 1e-12 MTISFGALAGLIAAIAFLVLVLFTIPVLLNVSKTLKEAEKTVQLTNESMAKLTEDMDDLM KQTGGLLEKTDALLQDVNGKMETLQPVVQAAADLGQSVSDINESSKKMINKVSNAHFTRT GMITSVITSAFARHFRRKG >gi|300497425|gb|AEAT01000029.1| GENE 18 16735 - 17103 571 122 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1505 NR:ns ## KEGG: LDBND_1505 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 122 1 122 122 126 99.0 2e-28 MSKFGSFLLGAVFGAAAGVAAASLISDDKLKEVKDKIKSNPNVEDLKEKYDNGTEILKNQ LASFPKNIEDDSELKDFDDIVIDDSANGAGEQDASDLDNAEKSEEGEEKPEEPSTPTSPD QE >gi|300497425|gb|AEAT01000029.1| GENE 19 17194 - 17439 336 81 aa, chain + ## HITS:1 COG:no KEGG:Ldb1595 NR:ns ## KEGG: Ldb1595 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 80 1 80 81 110 96.0 3e-23 MTTTNMVLFLIYLMVTYFSFRKSDNPFVLKLRKYRGIILTILPAAFFAIFVMKEGYHDFL NVYLLLTLIGVYYLIRDLRKA >gi|300497425|gb|AEAT01000029.1| GENE 20 17503 - 18609 1940 368 aa, chain - ## HITS:1 COG:L96847 KEGG:ns NR:ns ## COG: L96847 COG0006 # Protein_GI_number: 15673631 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Lactococcus lactis # 3 364 4 362 362 359 50.0 4e-99 MNLDKLQNWLQENGMDVAYVSSPTTINYFTGFITDPEERIFKLFAFKDAEPFLFCPALNY EEAKASAWDGDVVGYLDSEDPWSKIADEIKQRTKDYQNWAVEKNGLTVAHYQALHAQFPD SDFSKDLSDFIAHIRLFKTESELVKLRKAGEEADFAFQIGFEALRNGVTERAVVSQIEYQ LKLQKGVMQTSFDTIVQSGKNAANPHQGPSMNTVQPNELVLFDLGTMHEGYASDSSRTVA YGEPTDKMREIYEVNRTAQQAAIDAAKPGMTASELDGVARKIITDAGYGEYFIHRLGHGI GMEVHEFPSIANGNDVVLEEGMCFSIEPGIYIPGFAGVRIEDCGVLTKEGFKPFTHTSKE LKVLPVKE >gi|300497425|gb|AEAT01000029.1| GENE 21 18762 - 19763 1757 333 aa, chain + ## HITS:1 COG:lin1640 KEGG:ns NR:ns ## COG: lin1640 COG1609 # Protein_GI_number: 16800708 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 5 322 2 323 335 287 48.0 2e-77 MNKQDVTIYDVAREAKVSMATVSRVVNGNNNVRKETRDRVMEVIKRLHYQPNAVAQGLAS KRTTTVGLIVPDLTNLYFAELSKGIDDIAVLYKYNIIISSVENRLMKEDVVIQGLLNKQV DGVIYMSNKLSEEAAEAFKRTDTPVVLAGTVSDNLEFPSANIDYKKADTEALNLLLNDGK KKLALIVGDKEAPINRNHRIPAFEKFVADNELEGCEIFDNIKDYSDGYNLYPELAKKGIN GAIITKDVSSVGLLNSALDRGAKVPEDFEIITASATQIASVVRPALTTIKQPLYDLGAVA MRMLTKLMNDEGLEDKHIVLPYELIKKQSTLNK >gi|300497425|gb|AEAT01000029.1| GENE 22 19870 - 20202 521 110 aa, chain + ## HITS:1 COG:no KEGG:Ldb1592 NR:ns ## KEGG: Ldb1592 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 110 1 110 110 206 99.0 3e-52 MDHLYEQFDLIEEITRKDGSQYYEISNIDQNGFAELAVNNGLIKSVRILVINIPRTKALE TYEQYINKAYQLHTLMNEEDWENPQWVEWDKPKGPVRDAYEMVLKANKIG >gi|300497425|gb|AEAT01000029.1| GENE 23 20217 - 21629 1761 470 aa, chain + ## HITS:1 COG:lin2502 KEGG:ns NR:ns ## COG: lin2502 COG0737 # Protein_GI_number: 16801564 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Listeria innocua # 1 451 2 457 463 290 35.0 3e-78 METLRILHTNDLHSHFEHFPKIRRYLKQVQETAAADQVLTFDAGDFMDRSHPLSDATEGQ ANIRLMNDFHYDAITIGNNEGISNPHAVLERLFDHANFPVLLSNLREEDESWPAWANDYK IIKTKKGTRLALVGLTAAYPMTYGPNHWHIKMLGETMDRVLPEIAGQYDCLILLTHVGLR MDQWLAKHYPEIDLIVGGHSHTLLEKGVKEGRTWITQTDKWGNYVGDISLEIGDDHKIIS IKPTTVPVADLPSQAGDEAEIAALYEEGQKMLQSRQVADLPEKFKDDKLAAIDVSLEAIA DFAGTDLAMLSTGLFLTPFKSGLINQFDLQHALPHPMHVVRTTLLGRDLWRLVMEVEKNR HFLEHYPLVGMSFRGKIFGQVYYRGIKYDPMTRNVFVNGQLLDPAEEYRIAVLDHYVLIP FFPTLAIVGENEFLFPQFLREVVGDYLGRKYPVKKEGEFIEERAERAEKR >gi|300497425|gb|AEAT01000029.1| GENE 24 21595 - 22155 612 186 aa, chain + ## HITS:1 COG:SP0767 KEGG:ns NR:ns ## COG: SP0767 COG4470 # Protein_GI_number: 15900661 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 29 184 16 170 170 76 35.0 3e-14 MRKEQKELKKDKGKKEQKTEAAEAKPLHPLAEVVVAGEKVVINQREYRLLVNQRDALDRE VLKQKYDPYLDQYDYLVGDVSSDHLRLRGFYNDYVKTSIDRKKSMIVDYLTEYCNPGAPY FILESLQPSRKPWPTQRRRPARKRPKNKAAFSERKVKDGRPKKGSYAESCKKNRRHQAFV IRKKKP >gi|300497425|gb|AEAT01000029.1| GENE 25 22152 - 22922 795 256 aa, chain + ## HITS:1 COG:SPy1043 KEGG:ns NR:ns ## COG: SPy1043 COG0647 # Protein_GI_number: 15675039 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 4 256 3 254 254 223 47.0 4e-58 MKDYRLFLIDLDGTIYRGKETIESGVRFVKRLDEAGLDYLFLTNNTTRTPQMVADKLAGH GVKTDVSKIYTPSMATASYILEKEAKRPIGVYIIGQIGLWKEILDRPEFYYDEENPDYVI VGMDTDLTYHKLMVATRCIHRGAVFIGTNSDQNLPVGKELRPGNGSICAALEVASGQKPL FIGKPEAIIVNRALDLAGFKAEEALIVGDNYPTDIMAGINSGVDTLLTLTGVTQKADLAG LTPPTYLVNDLDEFSL >gi|300497425|gb|AEAT01000029.1| GENE 26 22919 - 23524 624 201 aa, chain + ## HITS:1 COG:L157321 KEGG:ns NR:ns ## COG: L157321 COG4478 # Protein_GI_number: 15673126 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 13 192 9 188 205 97 37.0 2e-20 MKKFLSKLGQPLFHFFFAVSSAVVGAIVVSWPLLLLFTLLEKTYQTVNLTVGQVMNNYNQ LLLYLVWPGQTKLQMSNMPTSASAAAHFADAKNLFILAELVFLLCLALSSYFRNYKKPLK LTQTQALLLMLLPIVVMPFALTDFDSFFRVFHTFFFRNDNWLFDPATDPVINVLTEGFFA SCFAVGGAIYELYLARYLLKK >gi|300497425|gb|AEAT01000029.1| GENE 27 23596 - 24255 1123 219 aa, chain - ## HITS:1 COG:lin0035 KEGG:ns NR:ns ## COG: lin0035 COG0586 # Protein_GI_number: 16799114 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Listeria innocua # 3 212 7 216 219 207 57.0 9e-54 MPLIDFILHIDDHLVTIVNNFGAGTYWIIFAIIFIETGLVIFPFLPGDSLIFAAAAMAAN PKYVLNVWLLYIVAAAAAIIGDSINYEIGKWSVTSGAKHSWFNKLINENNRLAAEKFFER HGSITIVIGRFIPFIRTFVPFISGGSKMHYQTFVIYNILGGLLWTALFTSIGYFFGNFPV VKDHFSLIVIGIILVSVVPILVVALKKKLTMRRERQFND >gi|300497425|gb|AEAT01000029.1| GENE 28 24290 - 25273 1219 327 aa, chain - ## HITS:1 COG:SP1563 KEGG:ns NR:ns ## COG: SP1563 COG0492 # Protein_GI_number: 15901406 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Streptococcus pneumoniae TIGR4 # 16 327 5 321 321 239 40.0 6e-63 MVLVYFRKEISLIKQYDLAVIGAGPVGLFAAYFARLHGLKTVILESLNEPGGQPEMLYPF KKILDIPVFNEITAADLTKRLLANLTDQDLVTGHKVSQLEKTDEFVIDGEYQVRSIIVAT GNGAFKAKKFPLKATPEAEDHIHYFFKNPDLFAGQKIGIFGGGDTALDWAQELSQIADVT LVHRRDQFRGMESSVENLKADQKVTLKTPYLPKSMQVEKGQLEISLKKVGGDEVTQETFD QILVAYGFRADNRFVSKWGVDLDQGLIAVDRSMQTSVPGIYAIGDSCGYPGRVPVIGIGF GEAQIAVNAIMQGLFPEKSLTIHSTSI Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:11:17 2011 Seq name: gi|300497421|gb|AEAT01000030.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00018, whole genome shotgun sequence Length of sequence - 1231 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 402 390 ## LDBND_1996 transposase + Prom 441 - 500 2.9 2 2 Tu 1 . + CDS 655 - 906 97 ## LDBND_0053 hypothetical protein 3 3 Tu 1 . + CDS 1015 - 1197 194 ## LDBND_0054 hypothetical protein Predicted protein(s) >gi|300497421|gb|AEAT01000030.1| GENE 1 3 - 402 390 133 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1996 NR:ns ## KEGG: LDBND_1996 # Name: not_defined # Def: transposase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 133 18 150 424 262 100.0 4e-69 MDLLKTVFGIDVSSRKSNVCIMVNGQKVNDYAISNDMVGFNQLLGDLKQVTNPQIIFEAT GVYSRRLQAFLDMHELRYVMMNPLEAKRKTKDDLHQNKTDKLDALYLAKLQSEHPQRLAY VQSEEYQELMANN >gi|300497421|gb|AEAT01000030.1| GENE 2 655 - 906 97 83 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0053 NR:ns ## KEGG: LDBND_0053 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 44 83 1 40 40 70 100.0 2e-11 MFCLLFLGNYNLIAIILRTVKTSQCHYYNSCVIISSTEMKEQLMSRKYKLRWQDRGILIV VFILLATIIACVADRSKLYYKRA >gi|300497421|gb|AEAT01000030.1| GENE 3 1015 - 1197 194 60 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0054 NR:ns ## KEGG: LDBND_0054 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 60 27 86 86 118 100.0 6e-26 MDRVEVWLKKFTAEAETGDVHKLTYHVISQNGQEIAVKANFSMVDNPLYGKLVYQTMTMA Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:11:24 2011 Seq name: gi|300497418|gb|AEAT01000031.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00258, whole genome shotgun sequence Length of sequence - 716 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 2 - 61 5.7 1 1 Tu 1 . + CDS 96 - 608 462 ## LDBND_0652 transposase Predicted protein(s) >gi|300497418|gb|AEAT01000031.1| GENE 1 96 - 608 462 170 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0652 NR:ns ## KEGG: LDBND_0652 # Name: not_defined # Def: transposase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 170 1 170 170 290 98.0 1e-77 MTPTSKKYIVKLTDDELKRLNKILRQKNTSETVANRIRILKDMDANHPPVKTYKQCASDH GISEPTITNVVRKFVNEGLDATIKLKRSVNSDNAQRKVDGRVEAKLLEVACGPVPKGHSR WTLRLLEAQMKIILDEPISREAIRRTLKKTNFDLTAATTGASQRKKTQNS Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:11:28 2011 Seq name: gi|300497416|gb|AEAT01000032.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00119, whole genome shotgun sequence Length of sequence - 1106 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 14 - 51 -0.9 1 1 Tu 1 . - CDS 72 - 1028 565 ## LDBND_1390 transposase dde domain Predicted protein(s) >gi|300497416|gb|AEAT01000032.1| GENE 1 72 - 1028 565 318 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1390 NR:ns ## KEGG: LDBND_1390 # Name: not_defined # Def: transposase dde domain # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 318 146 463 463 624 97.0 1e-177 MTYKKGFRMMTMGWTDGSSFVPIASSLLSSKNDQNVIGTTKKIDKRTIAAKRRIMAQSKG IDVVIQLLDQALKAGLTAKYVMFDTWFSNPHQIVQISQRGLNVIAMVKKSSKITYEFEGK RMNVKQIFNACKKRRGRSRYLLSVPVKVGDPAKDGAQIDARIVCVRNRSNRKDWIALICR DMTIDENEIIRIYSKRWDIEVFFKTCKSFLKLGTEYHGLSYDALTAHTAFVFLRYMFMSV EKRDDEDDRTIGELFYCMVDELADITFNHSLQIMVEAMFESVKEIFQPTEEQMERFTKAF ISRLPKYMQEALTPSLAA Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:11:37 2011 Seq name: gi|300497398|gb|AEAT01000033.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00088, whole genome shotgun sequence Length of sequence - 17309 bp Number of predicted genes - 17, with homology - 17 Number of transcription units - 9, operones - 3 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 384 - 424 4.0 1 1 Tu 1 . - CDS 436 - 1056 329 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) - Prom 1255 - 1314 5.9 + Prom 1042 - 1101 6.5 2 2 Tu 1 . + CDS 1223 - 1417 98 ## LDBND_0102 hypothetical protein + Term 1441 - 1499 -0.9 + Prom 1472 - 1531 3.8 3 3 Tu 1 . + CDS 1578 - 3701 1319 ## COG3409 Putative peptidoglycan-binding domain-containing protein + Term 3715 - 3765 0.7 4 4 Tu 1 . - CDS 3735 - 4310 -135 ## LBUL_2014 hypothetical protein - Prom 4336 - 4395 5.8 - Term 4677 - 4724 9.6 5 5 Op 1 . - CDS 4729 - 5598 1131 ## LDBND_0107 1-acyl-sn-glycerol-3-phosphate acyltransferase 6 5 Op 2 . - CDS 5662 - 6486 1061 ## Ldb0132 putative glycosyltransferase 7 5 Op 3 . - CDS 6514 - 7290 1072 ## LDBND_0109 1-acyl-sn-glycerol-3-phosphate acyltransferase - Prom 7513 - 7572 6.5 - TRNA 7349 - 7424 84.9 # Lys CTT 0 0 + Prom 7472 - 7531 6.8 8 6 Op 1 8/0.000 + CDS 7551 - 8279 1171 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 8283 - 8321 3.1 9 6 Op 2 . + CDS 8326 - 10221 2687 ## COG5002 Signal transduction histidine kinase 10 6 Op 3 . + CDS 10211 - 11773 2286 ## LDBND_0112 hypothetical protein 11 6 Op 4 4/0.000 + CDS 11774 - 12574 1342 ## COG4853 Uncharacterized protein conserved in bacteria 12 6 Op 5 3/0.000 + CDS 12644 - 13390 874 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I + Prom 13406 - 13465 9.6 13 6 Op 6 1/0.000 + CDS 13485 - 14768 2098 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain + Term 14777 - 14828 15.3 + Prom 15095 - 15154 5.1 14 7 Tu 1 . + CDS 15259 - 15738 842 ## COG1576 Uncharacterized conserved protein + Term 15751 - 15791 6.4 + Prom 15759 - 15818 5.1 15 8 Op 1 . + CDS 15865 - 16308 499 ## LDBND_0119 hypothetical protein + Prom 16320 - 16379 3.0 16 8 Op 2 . + CDS 16410 - 16748 421 ## Ldb0145 hypothetical protein + Term 16764 - 16804 4.4 - Term 16737 - 16803 17.1 17 9 Tu 1 . - CDS 16813 - 17178 625 ## COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase - Prom 17228 - 17287 5.1 Predicted protein(s) >gi|300497398|gb|AEAT01000033.1| GENE 1 436 - 1056 329 206 aa, chain - ## HITS:1 COG:ML1003 KEGG:ns NR:ns ## COG: ML1003 COG1974 # Protein_GI_number: 15827479 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Mycobacterium leprae # 19 206 48 235 235 100 38.0 1e-21 MKIGTKIKQQRKKKGLTQKELASILGLGGVTTVASWEQGLSNPPAKRIPAIADALDISVS ELLGNDDAKPKNLVDLADAKVISIPILGTIACGKPIFSEENYEGHLNKVYFGDPPTGELF ALTCQGDSMAPYILDGDKVIVRKQETVENGEIAAVLINNEATLKTVKYVGDKTLLIPKND AYDPLVLTPDNQNQVLGKVVSIIRDI >gi|300497398|gb|AEAT01000033.1| GENE 2 1223 - 1417 98 64 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0102 NR:ns ## KEGG: LDBND_0102 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 48 1 48 53 78 100.0 1e-13 MKEIDIRDPRSKGRIKTKICNYIKTDDGTELLEFKYQRIRRTILVDDFLNEVMQARKNSY TTEQ >gi|300497398|gb|AEAT01000033.1| GENE 3 1578 - 3701 1319 707 aa, chain + ## HITS:1 COG:BS_ybfG KEGG:ns NR:ns ## COG: BS_ybfG COG3409 # Protein_GI_number: 16077289 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative peptidoglycan-binding domain-containing protein # Organism: Bacillus subtilis # 1 608 2 632 732 392 40.0 1e-108 MDERVKDVQVWLNQTYGKVSGFKKAPENGLTGWPTIYSLREGLQHELGITALAEGFGDST KKALSAKIGDLKRGYHGNIIKLVKGAFWCKGISPNNFTDSFDSDLTTAIKSLQGDAGITA NGQLTVNLMAALFDMSAFVLTPGQGKSKVRQMQQYLNGKYGDELGILPCDGIYQRATNTA LIFALQKAIGVAGANGNYGPGTVAATPTVSEGASGEVVRVIQYGLLVNGFYDGDCDGKYD ADVASAVIAFRKFMNLPPFTGKSDLSVIKGLLTSNGNTDRDSIALDTSAQLTDKDISNFK RYGFSVVGRYLTGSVGTGASKRNKYLTSDELERITDAGLRVFPIYEDGGYEIEYFSRNRG YQDGITAAKKAAELGFPSKTTIYFAVDVDIQDGDIEGTVVPYMRGIIDALKLSPYEPGIY GTRNVCLHGEEVGMKYSFVADMSYGWSGNLGFRMPTNWAFDQFTEYPIGSTDIDQVAASG KDAGVNKFVPQLYGTISYREVAADVLKGLGKSVSVEFNKKLELVNIPSLKISVELVNSLS VADETPAITISNGKLDSISFASWLQTSGHIKGNGVDAVVNEANKVISSASITNGNVAIEA SINNSGESKLKFIYHILEAKDKQLDNELSVVITVTSKPTDLFTGTKIPNVDVPKLVTQSQ TDQKSWETLIGFSTVVAIAGVSIFISGGTLSVLLDLIPQLFTGLLVG >gi|300497398|gb|AEAT01000033.1| GENE 4 3735 - 4310 -135 191 aa, chain - ## HITS:1 COG:no KEGG:LBUL_2014 NR:ns ## KEGG: LBUL_2014 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 191 1 191 191 325 98.0 8e-88 MDTTNSITFTSKLTFWDKFKCFYLLHLCSLIFLIRFQKKWQKILIYLWYTSVCGFSLAIL VVSYPFVTIKMFIDVFLTLSCFSWVPAITAFLISLKCPSIINLKLSPDNNLGRAPIVKIG DSNSQIVYLKSSLLLDTKNFYLIMCPNYLPKHKSRVFYSFISKSQNTTALSKVNFIASVK PHFKKFIKLHI >gi|300497398|gb|AEAT01000033.1| GENE 5 4729 - 5598 1131 289 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0107 NR:ns ## KEGG: LDBND_0107 # Name: not_defined # Def: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 289 1 289 289 592 97.0 1e-168 MIIGDHRLDVIHNIELAANNRNFTTKTEIGDPQMSMEERVKLVEDFWAKQDKFKTKAEGL AGNLILQTLTQKFFGKIQVTGLDKLQHLAKGGAIVTANHFNQVDALAVNRLAQKAHHRME IVIEDTNLKLPGFFSFIMNNMGSIPLVQSPNYIGREFIHHLSHAFNKSHWVLIFPEQEMW WNYRKPRKPQRGAYYFAAKCNVPIISTFVEIQDLPDVEKDNEHFYQTRYTLHVLGVLYPD PTKSVNFNATDLMEKDYALKVQAFEDCYHKKLDYDFTPWDIAGWRGEDD >gi|300497398|gb|AEAT01000033.1| GENE 6 5662 - 6486 1061 274 aa, chain - ## HITS:1 COG:no KEGG:Ldb0132 NR:ns ## KEGG: Ldb0132 # Name: arbX # Def: putative glycosyltransferase # Organism: L.delbrueckii # Pathway: not_defined # 1 274 1 274 274 538 98.0 1e-152 MNFLFCGDHNAERGVLIAVLSLLKAERGEEVHVYILTMRAKSKSRSFKPFSQHAADFIRS LIVADNPNSSLELIDCTENFIKEPPTANMGTRFTPYAMLRLFADELPQIPDRILYLDDDV IIRRPIDQFYTQDLTGTELVGVLDYFGRFFFHNQKKIFDYLNSGVLLLNMPEIKRTGLFK RVRHLMQVKKMFLPDQTAINKLAKEKRIAPRKYNEQYALQDDTVIQHFTTSFRFFPYFRT QTVKPWDVKRVHSVLHLHEYDDLLNEYLKLKDQL >gi|300497398|gb|AEAT01000033.1| GENE 7 6514 - 7290 1072 258 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0109 NR:ns ## KEGG: LDBND_0109 # Name: not_defined # Def: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 258 2 259 259 499 99.0 1e-140 MSKKTYYYHSESEDLVSSAQQDFQLPDDYQVFRKGAAWQFWNGLVRSLACAFAWLYSRLF LLVKVKGKEKLRPFKKQGYFVYGNHTQMLGDPFTPMTIVNPYHYYALAAQANWGIPFLGK YVIPAAGLPVGKNIKQSIRLLKDVKYAYEEKQAAIVIYPEAHLWPYYTKIRPFPATSFNF PVSLKAPAFAMTTTYQPCRWRKRPKITVYIDGPFYPDEKLGKKAAQEKLHGEIAKSMQER AKLSTCEYCSYVKIDSKN >gi|300497398|gb|AEAT01000033.1| GENE 8 7551 - 8279 1171 242 aa, chain + ## HITS:1 COG:lin0315 KEGG:ns NR:ns ## COG: lin0315 COG0745 # Protein_GI_number: 16799392 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 242 4 237 237 320 70.0 2e-87 MPKKILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLMLPKKD GLEVAREVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSR DIVKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHM DQVMTREHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGYFIKQQT EE >gi|300497398|gb|AEAT01000033.1| GENE 9 8326 - 10221 2687 631 aa, chain + ## HITS:1 COG:lin0316 KEGG:ns NR:ns ## COG: lin0316 COG5002 # Protein_GI_number: 16799393 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 22 629 5 610 610 482 42.0 1e-136 MKKDKKARKEKVKKEKTNLLKRAVSSIQTKIALIFMLLLLATIEIIGAYFTRQMEQTSIN NFQTTIQLQSIVTDQLTAQLVKNGKSADRKMNQIITDYSNDAISEIQVVDSKNVIRAVSN LNDKNRVGQLSNNGDIREVINSGQQKTQVASDQKGSFMVQIVPLTSGTNIVGAVYVRASM ADVFNNLRNISMMFLTASLLAVVVAAIASMFISRAITRPIEELRQQAIQVADGDYSTQVK IYSNDELGQLGAAFNTLSVKIERSNEQSESERRRLDSVLSHMTDGVIATDRHGNVSIMNQ MAQDFLDVKAEDAIKKPISQVLGLGEDYTSQDLISNQSDMQVTVNAGTDDEIILHASFTL IKRVTGFVSGAVCVLHDVTEQIKNEDEQRQFVSNVSHELRTPLTSVRAYIEALNEGAWKD PEIAPQFLDVTQKETERMIRMVNDLLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIV EHDQGEAQSDTKEYVIKRDLGNQALWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLT QNQNQILLSISDQGLGIPRKDLGKIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGR IWADSREGHGSTFYIALPYEPMDEEDEWDEV >gi|300497398|gb|AEAT01000033.1| GENE 10 10211 - 11773 2286 520 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0112 NR:ns ## KEGG: LDBND_0112 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 10 520 10 524 524 745 97.0 0 MKFKFKFKFNDFLLHLATLTVILISIGLWVTVMTSDQRFSRISNESSSQSSASLSTHYRN VQSFYAPGQTYVFQNGVRYQVHDAKRNLPLKFVQYLEKVKLGTIEKMSTTASDYERLLAD QNYIMFAYPDQINFTVLLGKKQANSSLQFNRVFVSVKSKTRYLYFGNDKGSRVYRVKIKS GSFRQLAKYVKSAQDRQEVSFLHLKKLYVPFYAKEIKAKEYSYLISYQSSSYYASRLLGS SYRKSVAKNGRTVYTAGYSKRLQIPKEGKSNDHQYLYQNYLTSQERTATQEMLESAAYVK QLGLAEQDLRFFESSGKTVSYINYIEGYPIFANDALAQTQVTMGTESVSVAFSSMNLQIP IPYDGHVKTLPKTATLLKELNSIGIKESEIEKITIGYHIQADKKRSDLITLVPTYFIKVG GSWNSLAGWKKIKAENTDQLMEGSSPSSSSYSSSSSSSNESSSEANSSASSSVSQAPASS QEAYSSSRSQPAAESSSSSSSSSSSSAVSASSASSKEGEK >gi|300497398|gb|AEAT01000033.1| GENE 11 11774 - 12574 1342 266 aa, chain + ## HITS:1 COG:BH4024 KEGG:ns NR:ns ## COG: BH4024 COG4853 # Protein_GI_number: 15616586 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 260 1 262 262 66 24.0 5e-11 MDHRKIEWLFLILFCLVDIYLLIELWRAPVTLTSSTNSVTTSTSLKAEMKSDNITVPSLS RKGDSGYYLATRSKSDLKEAAKKLSSDVSTSYAEGDKTLYATMKTAIPLERMTVGEFKND SNYVPHGKQYVYAKNLSSNSSYVYVQKSQYGLVYSNLAQLVVNVKNKKITGYYQTYLTDL SSVRELQATISPLRAVTNLYTTRELADNSRVMQVKLGYTKLTEVRGSVIFVPTWLVWIEN KSSKSSSLKRVNAFSGQLLQNSTLDD >gi|300497398|gb|AEAT01000033.1| GENE 12 12644 - 13390 874 248 aa, chain + ## HITS:1 COG:BH4023 KEGG:ns NR:ns ## COG: BH4023 COG1235 # Protein_GI_number: 15616585 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Bacillus halodurans # 2 245 21 261 264 208 43.0 7e-54 MTDQHKILMDAGLSGKKTKELLAKVGVAIEDLDMVFLSHDHGDHSGGMGVLMRRYPQLNA FSNTGTWKYLEETGKIGCLPKDQINVIEPGQTRCYGDLEVTAFATSHDAAQPQYYVFSSG GKRLACLTDTGYVSEEVEYEIQDADAYLLEFNYDDLMLRSGPYPWSLQQRVRSDHGHLSN EQAAETLARVISSKTKHVFMAHRSQQNNLNYLARDVAEEVLAARDADVASDLELHDTEPM TPSSLINL >gi|300497398|gb|AEAT01000033.1| GENE 13 13485 - 14768 2098 427 aa, chain + ## HITS:1 COG:lin0320 KEGG:ns NR:ns ## COG: lin0320 COG0265 # Protein_GI_number: 16799397 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Listeria innocua # 62 426 143 495 499 231 44.0 3e-60 MSEEQDKQRNTRKKENNRLLTKAAIIGVVAGLLGGGIAYGGLSAANLNSNTSSSTASSSS SNTGENGSVTTSSSGTTKVNKSTITSGTMTSAYKKVQNAVVSVLNYKYTSSSSSSSDIYS MFGYGDSDSSDSSSSKKSLTLYSEGSGVIYTTANGKGYIVTNNHVISGAAKVKVILASGK TIAAKVVGKDSTSDLAVLSIDSKYVTQTASFGDSSSLQSAQTVIAIGSPEGSEYASTVTQ GIISSPSRTITYNSNQMTVIQTDAAINSGNSGGPLVNSDGQVIGINSMKLSSSSSGDSVE GMGFAIPSNEVVTIVNQLVKKGKITRPQLGIKVAAIAELNSYYKKQLGISTSLKKGLYVA SVTSGSAAASAGIKKGDVITAADGKTVNDVATLHSILYSHNVGDKVKITVNRNGKTMTFT VTLQASN >gi|300497398|gb|AEAT01000033.1| GENE 14 15259 - 15738 842 159 aa, chain + ## HITS:1 COG:lin0321 KEGG:ns NR:ns ## COG: lin0321 COG1576 # Protein_GI_number: 16799398 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 159 1 159 159 197 66.0 5e-51 MNIKIVCVGKLKEKYFKDGIAEYQKRLSRFAKVEIVQVPDEKAPESLSPAQMEEVKKREG ERILSKIKDKEYIYVLAIKGKERASEEFAKELKDLGTYGHSDITFVIGGSLGTSDAVNKR ANDLFSFGKLTMPHQLMRLVLIEQIYRAFMINSGSPYHK >gi|300497398|gb|AEAT01000033.1| GENE 15 15865 - 16308 499 147 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0119 NR:ns ## KEGG: LDBND_0119 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 8 147 1 140 140 183 97.0 2e-45 MTKTERYMWLANDLLLTAAAVSLIINLVGQTASGYAFSGSHGQATELLYDAFILLVAAAA LGVWLSKWLAPAAAWVIGACLLLGLVIDRVVGLYFGLTWYWTLAVVALAVSLVLASYRWR GKAVFNHWLAGILLAVSLVSCVMAWLG >gi|300497398|gb|AEAT01000033.1| GENE 16 16410 - 16748 421 112 aa, chain + ## HITS:1 COG:no KEGG:Ldb0145 NR:ns ## KEGG: Ldb0145 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 112 2 113 113 141 89.0 7e-33 MKNFATKPAVKTVFLLAGICLALFMAVQWIFALGTPGPVSWAIVGMIAITLLTLFLGIIP LTKLSPAVGYVTAAALAVIVLIFVFNIHGYISIGIWYLLYAALACGLLWAKK >gi|300497398|gb|AEAT01000033.1| GENE 17 16813 - 17178 625 121 aa, chain - ## HITS:1 COG:FN1138 KEGG:ns NR:ns ## COG: FN1138 COG3576 # Protein_GI_number: 19704473 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase # Organism: Fusobacterium nucleatum # 21 120 28 130 143 60 35.0 6e-10 MKKLDATTLTADQQKFFNDALAFVASVDKDGNPQVGPKESLTALDDKHLVWSEVTFSHLW ENIKNGSKVAVVVADVPSHTNVRVLGSVTIHEGDDFAKEYAAKVGKKTDTAVVVEVEEIF A Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:12:10 2011 Seq name: gi|300497397|gb|AEAT01000034.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00159, whole genome shotgun sequence Length of sequence - 545 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 40 - 544 269 ## LDBND_1837 transposase dde domain Predicted protein(s) >gi|300497397|gb|AEAT01000034.1| GENE 1 40 - 544 269 168 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1837 NR:ns ## KEGG: LDBND_1837 # Name: not_defined # Def: transposase dde domain # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 168 225 392 461 345 99.0 3e-94 MFDTWFSNPHQIVQISQRGLNVIAMVKKSSKITYEFEGKRMNVKQILNACKKRRGRSRYL LSVPVKVGDPAKDGAQIDARIVCVRNRSNRKDWIALICTDMTIDENEIIRIYGKRWDIEV FFKTCKSFLKLGTEYHGLSYDALTAHTAFVFLRYMFMSVEKRDDEDDR Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:12:15 2011 Seq name: gi|300497390|gb|AEAT01000035.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00109, whole genome shotgun sequence Length of sequence - 5730 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 5, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 317 - 376 6.0 1 1 Tu 1 . + CDS 506 - 928 439 ## LDBND_1123 diguanylate cyclase/phosphodiesterase with pas/pac sensor + Term 939 - 983 7.3 2 2 Tu 1 . - CDS 967 - 1872 1364 ## COG0657 Esterase/lipase - Prom 1899 - 1958 6.0 + Prom 1949 - 2008 6.4 3 3 Tu 1 . + CDS 2040 - 3935 2202 ## COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases + Term 3950 - 4002 10.6 + Prom 3974 - 4033 7.5 4 4 Tu 1 . + CDS 4056 - 4901 892 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold + Term 4912 - 4951 8.1 + Prom 4941 - 5000 3.9 5 5 Tu 1 . + CDS 5168 - 5704 339 ## COG0286 Type I restriction-modification system methyltransferase subunit Predicted protein(s) >gi|300497390|gb|AEAT01000035.1| GENE 1 506 - 928 439 140 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1123 NR:ns ## KEGG: LDBND_1123 # Name: not_defined # Def: diguanylate cyclase/phosphodiesterase with pas/pac sensor # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 8 140 1 112 112 205 78.0 5e-52 MAAYHPDMVKEGRAQLGFNLRDLAVNLPGAFFIYRADDGKILFANRELLRITECSSMEAL IEFIGREVKGLIAPEDYAEAVESCDQQVGDSDDAVAHMDYHVITKETHKRIYVHAVAHMV KNPYFGQIYYVILSPKPEQK >gi|300497390|gb|AEAT01000035.1| GENE 2 967 - 1872 1364 301 aa, chain - ## HITS:1 COG:SA0610 KEGG:ns NR:ns ## COG: SA0610 COG0657 # Protein_GI_number: 15926332 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 53 279 68 307 347 94 28.0 2e-19 MTLDRKILQAVEEMRTGSKMHDDKRDEGLPTEIPEVERINDLSYGPDPKWNLLDIYLPKK RTGKVPVIISIHGGGWVYGTKETYQFYGLGLAKEGFAFVNFNYRLAPDVQFPGEMDDVNR LMHWVAEHGAEYDLDMGNVFLVGDSAGGQMEEQYLAILTNDKFRQLFGYELPKLTVRAAA LNCGAYFMLTPGFTDGAPGAYFTPEAVSGKEEMLNTEKYLTQNLPPLFIMTANQDFLHDS AVRLDGYLLAKEIPHELHIYGDMENPRGHVFHCNQRDDIAKQCNLDELNFFRKHLKSSYN K >gi|300497390|gb|AEAT01000035.1| GENE 3 2040 - 3935 2202 631 aa, chain + ## HITS:1 COG:FN1128 KEGG:ns NR:ns ## COG: FN1128 COG1506 # Protein_GI_number: 19704463 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases # Organism: Fusobacterium nucleatum # 1 629 1 659 660 419 38.0 1e-117 MEAVKAEDLYQVVSLGNLQANGQRAVLARNQAKADGEGYWNWLDVFENGELKRLTTLGQE KSYALVDNSVYYTAQEGKGNCLLYKQELDQASPAKVADFKEAGYQVINSVAGHYLLLSRR VDLAEKKSTDYQVLDELPYYFNGQGYINKLRDRLYVWDLAEEKLTELFKDDPNFTVMETF VAKEKVYVVGVSYQTRRPFDGAVYEVDPSTGEAKLLLAAGKAEVSAIFALKGQVYCFANT HKKTGLNENPEFYQLTEDGLELAANFDNSGQSAIAGDCGVIGGNAFDVYGDKFYFVTTIV DHDEIYVFDEQEVKPFFATDGIIKGFRLTGENELFLEAAFANELLEFYLVKNGQVKKLSS YNDQALAGKYVAKVNEVEYESVEDGIQHGWVLLPKDYQAGKKYPAILDVHGGPRATYSKA FFHEMQVWAGAGYFVFFCNIHGSNGQGNQYGDLRGRYGTVDYEDLMKFTDAVLAAYPDID QTRLGITGGSYGGFMTNWVIGHTDRFKAAASQRSISNWLSFEHMSDIAPEFCVDQVGASE DDNPEKVWLHSPLKYVKNVKTPTLFLNSDEDYRCPVEEGMQMFHALMSHGVESRMVVFHG ENHELSRSGRPKNRLSRLQEIQTWFDGHLDK >gi|300497390|gb|AEAT01000035.1| GENE 4 4056 - 4901 892 281 aa, chain + ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 36 281 35 288 289 184 42.0 1e-46 MESMKTKTRSKFLAKTIPVLLTALLFLTACQKPLTKAEKEEQAKETVTFFFHGYGSSINA EKHMAEAARQAGKSNEVLEARVEENGSVKIKGKLADNPKNPIVLVGFSDNRNPDYHKDGW YAYKAVKAAQKKLGFSKMNLVGHSMGNMAISYMIMDYSAKKNFPTIKKQVDIAGHFNGIV GMEKDSPIDAAGKPKKMNSTYQELTKLRQVYPKGIGVLNIYGDTGKKSDGSVYNNSSRSL KYLLIRAKSYKEVKITGKGGQHSRLHENSQVDQVLQKFLWE >gi|300497390|gb|AEAT01000035.1| GENE 5 5168 - 5704 339 178 aa, chain + ## HITS:1 COG:lin0522 KEGG:ns NR:ns ## COG: lin0522 COG0286 # Protein_GI_number: 16799597 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Listeria innocua # 1 174 351 527 529 110 39.0 9e-25 MAVMLPTGALFRSAAEREIQKYLSEKQKTHAVIALPQGARNYTAIYTVLLIFKKKKSDQI LFIDASRDGVKNATRLKQNFLTEEGFTKILHTYRNREEVDRYSRLVSLDEIRENDYNWNI PCYIDTFSEKKIDVEATMSSLSAKQKVIETSKKEMIELLNKFDTPEARQAIKAVSISE Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:12:19 2011 Seq name: gi|300497387|gb|AEAT01000036.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00126, whole genome shotgun sequence Length of sequence - 3704 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 214 - 273 3.9 1 1 Tu 1 . + CDS 337 - 3039 3863 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 3102 - 3148 11.2 - Term 3089 - 3134 7.2 2 2 Tu 1 . - CDS 3162 - 3671 637 ## COG2116 Formate/nitrite family of transporters Predicted protein(s) >gi|300497387|gb|AEAT01000036.1| GENE 1 337 - 3039 3863 900 aa, chain + ## HITS:1 COG:L13145_1 KEGG:ns NR:ns ## COG: L13145_1 COG1012 # Protein_GI_number: 15674137 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Lactococcus lactis # 17 473 14 477 477 642 68.0 0 MVDVKKTQTTVTAAKELSADEKMEEAKRYTGELVNKALVAEEAYATYSQEQVDKIVAAMA LAGSEASLALAHEAVDETGRGVVEDKDTKNRFATENVYNSIKHEKTVGIIERNQVEGYIK VAAPLGVLAGIVPTTNPTSTTMFKILVALKTRNAIIFSFHPKAQKCSIHAAQILYDAALK AGAPKNIIQWIDKASLENTTALIRNPKIASILATGGPGMVHAALQSGNPSMGVGAGNGAV YIDHTAFLDRAVEDILLSKRFDNSMVCATENSAVVEAPIYDKWLQMMQDKGAYLVPKKDY QKLADFVFNDKHGVNGPVAGMSARWICEHAGVTLPEGKDVLLFELDPKNIGEKLSSEKLS PLLSVYKAKGREDGIRIVKALLDYQGAGHNAAIQIGSQNDPFIDEYGKAVQASRVLVNQP DALGGIGDIYSDGLRPSLTLGTGSWGKNSLSHNLSTSDLLNIKTIAKRRNRPQWIRLPEK IFYEKDSITYLSDENEQEISRAFIVADPGMVKFHFVDKIYEQLALRDKQVDTAIYSEVLP DPPLSQAIKIAKQMKKFAPDTIIAIGGGSALDVSKIARYIYEYSLDQEDGWLDNYDNVSE LFKELQQKFVDIRKRIVKFKHETRTSLVCIPTTSGTGSEVTPYAVITDDKQHVKYPLTDY ELTPQVAIVDPAFVMTVPKHTVAFSGFDCLSHSLESYVSVAASDFTRPWSLKAIQLIMNN LEASYKYDPQHPTYEGEKARENMHYAATLAGMAFANAFLGLNHSIAHKLGGAFGFPHGLC ISIAMLPVIKFNGASGNVKRTPYPRYEVYRAQKDYADIARSLGLPGKSDAELVDSLCKRI RELMKACDIEPSLSANGVSKEAFDAALPAMIDRVYDDQCTVQNPRQPSMAEIKQLLLSMY >gi|300497387|gb|AEAT01000036.1| GENE 2 3162 - 3671 637 169 aa, chain - ## HITS:1 COG:CAC1512 KEGG:ns NR:ns ## COG: CAC1512 COG2116 # Protein_GI_number: 15894790 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Clostridium acetobutylicum # 1 169 88 254 256 160 57.0 7e-40 MSAGLLEKKVKLGQAGLLWLVCWLGNLLGAGILAWMFVKSGLDLPVTATVFTKAAAAKMA APAGQLFLRGILCNILVCLAVWSGFQTKSDSAKLIMIFWCLLAFFSTGFEHSVANMTTFI VALLNPVQGAGAVSAGGMFYNLLWVTLGNMAGGIVFVALPYWLAAKDKQ Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:12:36 2011 Seq name: gi|300497333|gb|AEAT01000037.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00113, whole genome shotgun sequence Length of sequence - 50768 bp Number of predicted genes - 50, with homology - 50 Number of transcription units - 19, operones - 9 average op.length - 4.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 13 - 72 2.2 1 1 Tu 1 . + CDS 93 - 398 330 ## LBUL_1313 hypothetical protein + Term 495 - 532 -0.8 - Term 808 - 845 6.2 2 2 Op 1 . - CDS 867 - 2555 2302 ## COG0497 ATPase involved in DNA repair 3 2 Op 2 3/0.000 - CDS 2577 - 3392 944 ## COG1189 Predicted rRNA methylase 4 2 Op 3 . - CDS 3392 - 4255 1160 ## COG0142 Geranylgeranyl pyrophosphate synthase 5 2 Op 4 . - CDS 4260 - 4499 383 ## LBUL_1318 exodeoxyribonuclease VII small subunit 6 2 Op 5 7/0.000 - CDS 4492 - 5862 1673 ## COG1570 Exonuclease VII, large subunit 7 2 Op 6 4/0.000 - CDS 5849 - 6700 911 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase - Term 6709 - 6739 4.1 8 2 Op 7 10/0.000 - CDS 6749 - 7147 444 ## COG0781 Transcription termination factor 9 2 Op 8 4/0.000 - CDS 7147 - 7581 489 ## COG1302 Uncharacterized protein conserved in bacteria 10 2 Op 9 10/0.000 - CDS 7601 - 8167 929 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) 11 2 Op 10 . - CDS 8237 - 9343 1614 ## COG0006 Xaa-Pro aminopeptidase - Prom 9386 - 9445 7.2 - Term 9428 - 9481 6.5 12 3 Op 1 32/0.000 - CDS 9488 - 9796 516 ## PROTEIN SUPPORTED gi|104774294|ref|YP_619274.1| 50S ribosomal protein L27 13 3 Op 2 . - CDS 9803 - 10114 521 ## PROTEIN SUPPORTED gi|104774295|ref|YP_619275.1| 50S ribosomal protein L21 - Prom 10227 - 10286 4.4 + Prom 10063 - 10122 3.5 14 4 Tu 1 . + CDS 10355 - 10711 537 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Term 10712 - 10762 10.2 - Term 10699 - 10750 7.0 15 5 Op 1 5/0.000 - CDS 10753 - 11880 1404 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 16 5 Op 2 . - CDS 11907 - 13058 1747 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases - Prom 13116 - 13175 6.2 - Term 13163 - 13210 14.3 17 6 Op 1 18/0.000 - CDS 13217 - 13933 212 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 18 6 Op 2 19/0.000 - CDS 13926 - 14702 214 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 19 6 Op 3 24/0.000 - CDS 14718 - 15692 1533 ## COG4177 ABC-type branched-chain amino acid transport system, permease component 20 6 Op 4 20/0.000 - CDS 15707 - 16585 1215 ## COG0559 Branched-chain amino acid ABC-type transport system, permease components 21 6 Op 5 . - CDS 16634 - 17857 2021 ## COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component - Prom 18098 - 18157 9.7 - Term 18162 - 18202 8.2 22 7 Op 1 17/0.000 - CDS 18208 - 19473 1646 ## COG0151 Phosphoribosylamine-glycine ligase 23 7 Op 2 10/0.000 - CDS 19490 - 21031 2622 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) 24 7 Op 3 21/0.000 - CDS 21032 - 21613 771 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 25 7 Op 4 13/0.000 - CDS 21622 - 22662 882 ## PROTEIN SUPPORTED gi|149378138|ref|ZP_01895857.1| Ribosomal protein S7 26 7 Op 5 10/0.000 - CDS 22659 - 24137 2133 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 27 7 Op 6 9/0.000 - CDS 24113 - 26335 3195 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 28 7 Op 7 23/0.000 - CDS 26335 - 27009 955 ## COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain 29 7 Op 8 15/0.000 - CDS 27009 - 27257 413 ## COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component 30 7 Op 9 4/0.000 - CDS 27262 - 27984 1117 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase - Prom 28052 - 28111 6.0 - Term 28247 - 28285 0.3 31 7 Op 10 3/0.000 - CDS 28295 - 29590 1949 ## COG0015 Adenylosuccinate lyase 32 7 Op 11 29/0.000 - CDS 29634 - 30695 1225 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 33 7 Op 12 . - CDS 30748 - 31215 684 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase - Prom 31338 - 31397 6.0 - Term 31354 - 31383 2.1 34 8 Op 1 . - CDS 31399 - 31653 507 ## LDBND_1376 hypothetical protein 35 8 Op 2 . - CDS 31654 - 32628 1022 ## LDBND_1377 permease of the major facilitator superfamily 36 8 Op 3 . - CDS 32698 - 32841 60 ## LDBND_1377 permease of the major facilitator superfamily - Prom 32881 - 32940 6.1 - Term 33004 - 33051 10.9 37 9 Op 1 . - CDS 33063 - 33524 634 ## LBUL_1345 hypothetical protein 38 9 Op 2 . - CDS 33592 - 34323 776 ## LDBND_1384 hypothetical protein - Prom 34510 - 34569 4.6 39 10 Tu 1 . - CDS 34575 - 36380 2774 ## LDBND_1384 hypothetical protein - Prom 36445 - 36504 5.9 40 11 Tu 1 . - CDS 36565 - 38703 2834 ## COG0550 Topoisomerase IA - TRNA 38891 - 38964 79.7 # Arg TCT 0 0 + Prom 39050 - 39109 2.6 41 12 Tu 1 . + CDS 39205 - 41583 3442 ## LDBND_1386 xaa-pro dipeptidyl-peptidase + Term 41636 - 41688 7.1 42 13 Tu 1 . + CDS 41695 - 42465 911 ## COG0477 Permeases of the major facilitator superfamily + Term 42597 - 42633 2.5 + Prom 42468 - 42527 11.3 43 14 Op 1 . + CDS 42773 - 43555 721 ## COG1897 Homoserine trans-succinylase 44 14 Op 2 . + CDS 43598 - 44521 1034 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 + Term 44638 - 44685 9.8 - Term 44614 - 44679 11.0 45 15 Tu 1 . - CDS 44691 - 45683 1073 ## COG1816 Adenosine deaminase - Prom 45713 - 45772 8.6 - Term 45838 - 45885 12.1 46 16 Tu 1 . - CDS 45900 - 46241 633 ## Ldb1464 hypothetical protein - Prom 46399 - 46458 7.1 + Prom 46349 - 46408 7.6 47 17 Tu 1 . + CDS 46434 - 47363 1257 ## COG1307 Uncharacterized protein conserved in bacteria + Term 47395 - 47433 4.4 - Term 47375 - 47429 9.9 48 18 Op 1 6/0.000 - CDS 47452 - 48141 1011 ## COG0620 Methionine synthase II (cobalamin-independent) 49 18 Op 2 . - CDS 48298 - 48597 277 ## COG0620 Methionine synthase II (cobalamin-independent) - Prom 48629 - 48688 5.6 + Prom 48732 - 48791 8.4 50 19 Tu 1 . + CDS 48846 - 50621 3025 ## COG4716 Myosin-crossreactive antigen + Term 50680 - 50729 13.1 Predicted protein(s) >gi|300497333|gb|AEAT01000037.1| GENE 1 93 - 398 330 101 aa, chain + ## HITS:1 COG:no KEGG:LBUL_1313 NR:ns ## KEGG: LBUL_1313 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 101 1 101 101 185 99.0 5e-46 MSKFQNFASQAAQPLKKAFHYLFAYDEDRLTLRGDSLAVNLAKLQLAFLKRQYLLVTLND GSWRVGKITKRISPSRFVFRDADNKIFYLLDINDILTVELP >gi|300497333|gb|AEAT01000037.1| GENE 2 867 - 2555 2302 562 aa, chain - ## HITS:1 COG:SP1202 KEGG:ns NR:ns ## COG: SP1202 COG0497 # Protein_GI_number: 15901065 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Streptococcus pneumoniae TIGR4 # 1 560 1 555 555 372 38.0 1e-103 MLVELDIQNFAIIKSLKIKFQPQMTVLIGETGAGKSILIDALSLLLGHRAQKEMVRSGQS KAVVTGLFTLQDEEMREVEQIADDYGLPMDGDDLIISREISSKGRNVIRINGQLTTITAL AKIGEYLVDIHGQNDQQMLMDQSRQIDLVDEYAGKDFKPLLGKYQAEYRTWQSLNQRLEH LRRDSRELAQRQDILQFQVEELTQADLTDEQEDQNLEDEFNKLNNYQKIAESANFMIQLF DDDEHGLTSLLGDAQGAAEDLADLDKDFKNVAQSITDGVYSLSDARSELGDIMDSLEFDE ERYQYVQNRLDLLNNLKKKYGPSLADVFDFYAKVSKELSQFETGGLDEEELVNQIAAVEE KMSVMAADLHQARESTALKLEEAIKRELADLYMDKARFSIRFAKTDNFTVKGTDDLAFYI APNPGEELMPLVKIVSGGEQSRLILALKAIFSRVEPVGTMVFDEIDTGVSGRVAAAIGKK MHAIAGQKQVIAITHSPQVAASADHRFAIAKQVAAGETFTQVKELDEDSSIKMIAQMMAG ANVSEAAEQNAADLIASQRKQD >gi|300497333|gb|AEAT01000037.1| GENE 3 2577 - 3392 944 271 aa, chain - ## HITS:1 COG:lin1403 KEGG:ns NR:ns ## COG: lin1403 COG1189 # Protein_GI_number: 16800471 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Listeria innocua # 4 267 5 268 274 315 58.0 7e-86 MASKERADVLLAAKGIFNSRTQAQRAIMAGLVTDHNHQRIDKAGEKFPVDEEFFIKKDKL KYVSRGGFKLEKAVKVWNIDLKDKVCLDIGASTGGFTDVALQNGAKLVYALDVGYNQLAW QLRDDPRVVVMERQNFRYSVPADFTEGLPDFAMTDVSFISLDLIMPPMYEILKDQGDAVC LIKPQFEAGPENVGKHGIVRDHAVHQAVIEHTMAKALEIGFSILGVDYSPIKGGKGNIEF LLHLKKDQANPGQNLWSGSVSELVDRAAQGL >gi|300497333|gb|AEAT01000037.1| GENE 4 3392 - 4255 1160 287 aa, chain - ## HITS:1 COG:alr0213 KEGG:ns NR:ns ## COG: alr0213 COG0142 # Protein_GI_number: 17227709 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Nostoc sp. PCC 7120 # 31 276 44 297 309 174 40.0 2e-43 MTTFKEFQAKYTPIINDFLEGQLAKESDDPRFAEIMAYSVMAGGKRLRPLLFLATLDALG VEITEKEVQAACGIELIHTYSLIHDDLPAMDNDDYRRGELTSHKKWGEAEAILAGDALQP LGIQWIAQAEHNWKLVEIITEAVGPKGMVAGQYLDIDTTNNEDSSEEVIDHMEWLKTGCL ILASVQMATALAACPNQQAQKYLAFAKHFGRSYQLYDDLVDIVESQEEAGKATHKDQEVG KNNSLTMLGAEATRNELKQLIEKGKADLAGEKAEVLLGFLDLYQKVL >gi|300497333|gb|AEAT01000037.1| GENE 5 4260 - 4499 383 79 aa, chain - ## HITS:1 COG:no KEGG:LBUL_1318 NR:ns ## KEGG: LBUL_1318 # Name: not_defined # Def: exodeoxyribonuclease VII small subunit # Organism: L.delbrueckii_BAA-365 # Pathway: Mismatch repair [PATH:lbu03430] # 1 79 1 79 79 90 98.0 2e-17 MTEKNNFESQLKELQEIVGQLENGQLSLEESLAQFQTGVKLSRELKQELTKAENTVAKLI ESDGSEKELDPTDASAPKE >gi|300497333|gb|AEAT01000037.1| GENE 6 4492 - 5862 1673 456 aa, chain - ## HITS:1 COG:lin1398 KEGG:ns NR:ns ## COG: lin1398 COG1570 # Protein_GI_number: 16800466 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Listeria innocua # 9 453 4 446 450 341 42.0 2e-93 MDSIKGTDEKYLTVSELNWYVKQKFDRDPYLRQIFLQGELSNFRFRRGGHQYFSLKDDKS KINVVMFRGDFDKVKFEPEEGMKVYVTGRLSTYEAQGSYQFYAKSMEPAGLGALYERFRQ LQEKLAKEGLFAQEHKRPLPLFPDKIAVVTSASGAVIHDIMVTANRRFPHAEIDLFPAQV QGESAAGSLVSAMQQIQARADEYDVLIIGRGGGSLEDLWPFNEEEVVRQVYAMKMPVISS VGHETDTTLCDLAADCRAATPTAAAEMATPALTLVLAEIGQLQTRLLTDIRAVIQVRAQA LAQLENSFIMKEPQRLYEQKMQQVDQLSQQLSRMMEVIVKDQGQKLSILTQRLQHQAPDR RIKQLKQENSYLAKSLEMGIKRILEQKQAACRQAVQQLDDYSPLKTLARGYSYTTDASGN VVKSVQQLAPGDQVRLHLKDGQAIGRIEEIKEEKND >gi|300497333|gb|AEAT01000037.1| GENE 7 5849 - 6700 911 283 aa, chain - ## HITS:1 COG:BH2784 KEGG:ns NR:ns ## COG: BH2784 COG0190 # Protein_GI_number: 15615347 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Bacillus halodurans # 4 277 5 278 279 279 52.0 3e-75 MGEILDGKKLARELGEKLGSEVASLKEHGVSPKLCVINIGDDPASKVYVASKKRKAEKLG IKQVVYQLPADESEEDVLKLIDSLNADPEVSSLMVQLPVPPQINADRVIERIDPEKDVDC LTPANIGRLWQGKHFVEPATAAGIIALLDHYQIDLTGKNAVIVGRSNIVGKPLAALMLER NASVSILHSRSRNLADLTKQADILVCAVGKAEMIKADMVKEGAVVIDVGINRVDGHLVGD VDFAPVKEKASWITPVPGGVGPLTVEFLMEEVIKLTRRQHGLD >gi|300497333|gb|AEAT01000037.1| GENE 8 6749 - 7147 444 132 aa, chain - ## HITS:1 COG:L92686 KEGG:ns NR:ns ## COG: L92686 COG0781 # Protein_GI_number: 15672676 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Lactococcus lactis # 42 131 235 323 323 70 43.0 6e-13 MNQHDSRRIALQAIYLYNQDPSVTASELENNVKSALDLDTLPAYSQELVSGVIDKQAELR DKLSANLKQGWRLERLSKTSLAILEVALYEMLYSPVIEDRSAINEALNLCDEFDDPKSKA FINGILANFVQE >gi|300497333|gb|AEAT01000037.1| GENE 9 7147 - 7581 489 144 aa, chain - ## HITS:1 COG:BS_yqhY KEGG:ns NR:ns ## COG: BS_yqhY COG1302 # Protein_GI_number: 16079489 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 122 1 122 135 90 40.0 1e-18 MADNSTIVLSGNDEGDQIKIDLQVLEVILGISAQKVDGVAGMRGGLKSGLSRVFGREDRG KGVAVSVDEDGELTADVYVYLKYGVNVPAVAGKIQEALKQQLTQMTDMNLKSIDVHVVGL VFPEDEKNFEDADQPLFPDQEEDK >gi|300497333|gb|AEAT01000037.1| GENE 10 7601 - 8167 929 188 aa, chain - ## HITS:1 COG:lin1392 KEGG:ns NR:ns ## COG: lin1392 COG0231 # Protein_GI_number: 16800460 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Listeria innocua # 3 187 1 185 185 251 65.0 6e-67 MTMISVNEFKNGLTIEYNNDLWRIVEFQHVKPGKGSAFVRSKLKSLRTGAVQEYTFRSTA KVETADIQTRQMQYLYNDGSSYVFMDTATYEQLEVPNAQIDQEAKYLKENMIVNIISHNG ETLGLDLPNTVDLEVVETEPGIRGDTSSGGGKPATMETGLVVTVPFFINVGDVLTINTSD GSYVSRSK >gi|300497333|gb|AEAT01000037.1| GENE 11 8237 - 9343 1614 368 aa, chain - ## HITS:1 COG:BS_yqhT KEGG:ns NR:ns ## COG: BS_yqhT COG0006 # Protein_GI_number: 16079502 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Bacillus subtilis # 14 366 2 352 353 237 38.0 3e-62 MSKNNELLSLLTRRIKETADLIKDKDADALLVFNRANYRYLTNFTGEEAQLIIAKNGDRV LLSDSRFAPQIEAQAVGELKVVMKHGHEAAEIAAEVKKLGVKKLLVEAEFVSAYEYDAIK SQLPDVDLVMAAEIVERVRNVKDDLELATLKKAVEISERAFEEVLPMLKPGAKERDVGAK LDYLFKLYGGDGPGYDSIIASGPRSSWAHGVASDRLMQEHELVVIDAAASYNGYTADITR TYALGSVEDELEKIYKIVLEAQKRGIAAAVAGATGKDVDQAARGYINNAGYGQYFGHGIG HGIGLEIHEMCQPEFLFSQTTLENGIVHTVEPGIYLPQGGVRIEDDILVNGDTPKVLSTL PKDELIHL >gi|300497333|gb|AEAT01000037.1| GENE 12 9488 - 9796 516 102 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104774294|ref|YP_619274.1| 50S ribosomal protein L27 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 102 1 102 102 203 98 2e-51 MNTMMMNILSNAKLLAHHKGGGSTTNGRNSAGRRLGAKRADGQEVHAGSIIYRQRGTKIH PGKNVGRGGDDTLFALTNGVVKFERLGKYKKQVSVLPVEDAE >gi|300497333|gb|AEAT01000037.1| GENE 13 9803 - 10114 521 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104774295|ref|YP_619275.1| 50S ribosomal protein L21 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 103 1 103 103 205 100 5e-52 MYAVIKTGGKQYKVAEGESIFVEKLDVQAGEEVVFDQVILVANGDDVKVGTPLVEGAKVV ASVDKQGKEKKVVTFKYKPKKHSHSKYGHRQPYTKVTVKSIEA >gi|300497333|gb|AEAT01000037.1| GENE 14 10355 - 10711 537 118 aa, chain + ## HITS:1 COG:lin2520 KEGG:ns NR:ns ## COG: lin2520 COG1393 # Protein_GI_number: 16801582 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 118 1 117 117 101 44.0 4e-22 MPKFYGYKRCSTSRKAQKWFDDKGISYDFQDLVETPPEKDLLLSWLTKYQDRSLRYFFNT SGQHYRQMGLKDKLPNMTIEEAADLLSKDGKLIKRPLVVDDQHLTCGFKEEVYEQTWK >gi|300497333|gb|AEAT01000037.1| GENE 15 10753 - 11880 1404 375 aa, chain - ## HITS:1 COG:lin1788 KEGG:ns NR:ns ## COG: lin1788 COG0626 # Protein_GI_number: 16800856 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Listeria innocua # 10 373 7 363 374 341 49.0 1e-93 MTEKDNRSFETIVAEAGSIKDGANPVAQPLCLSACYRHPDLDQAVNFDRLQGFTYSRVET PNRKTVEETLAKLEEGCQGFAVASGMAAVQLVLSVLKTGDEVVSLDDLYGGDFRYFRHLE DHFQIKFKLWNGETLENLLGLLTPKTKLVWLETPSNPMMKSVDIQAVADAVHDYNPDILV AVDNTFYTPYYQKPLTQGADVVIHSATKYLGGHNDILGGIVVVKDPVLADFYFQYTITGG DTMSAFDSWLLTRSLKTLPLRMQQHTASAKKIVSFLEQTPHVEKVLYPGKAGMISFYLDS DEEVDRVLKSVKLITFAESLGGAESLLTIPYYQTHDDVAEDQRLRLGITPLLLRLSVGLE NADDLIADLAQALGE >gi|300497333|gb|AEAT01000037.1| GENE 16 11907 - 13058 1747 383 aa, chain - ## HITS:1 COG:HP0106 KEGG:ns NR:ns ## COG: HP0106 COG0626 # Protein_GI_number: 15644736 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Helicobacter pylori 26695 # 6 380 5 378 380 361 48.0 1e-99 MAGFNTRLVHQPRQNDNQTGAVAVPVYKATTFAYPKIGAQVKYDYSRSGNPTRNAVEEQL ASLEGGDRAFVFASGMATIHAALTIFEAGDHIVIGDQIYGGTFRIVYQYFKDRGLEFTAV DTRDLAAVEKAIQPNTKAVYFEPVTNPLLQVTPVSGIAQLAHRHGILAITDNTFLSPYLL RPLEYGADLVVHSATKYLAGHSDVSAGAVIAKGEELADRVYFVQNAIGGILSPEDSNELA RGIKTLSLRLDRQMENVQAIIGFLKKQAGIAKIYYPGDPDLAGYDDLRKEAKGAGGVFSC ELDKEIYNPVVFVNSLNLFSLAVSLGAVESLVELPSKMSHAELSEEEQLTAGIKPGLIRF AVGIEDAADLIADIDQALAKAKR >gi|300497333|gb|AEAT01000037.1| GENE 17 13217 - 13933 212 238 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 6 226 12 231 318 86 29 3e-16 MSKEILEVDQLSVNYGAIKAVRDVSFDIKEGEIVTLIGANGAGKSTILKTISGLLKPANG EIVFLGQSLAKLTAPKIVAAGVSQVPEGRRIFAGMTVKENLQLGAYLRKDKDGVEKDMEA MFKRFPILKERQKQDAATLSGGEQQMLAMARALMARPKLLLLDEPSMGLAPIYIQEIFDI IKSINKEGMTVLLIEQNARQALSIANRGYVLASGEVKMTGSGQALLNDPAVQKAYLGG >gi|300497333|gb|AEAT01000037.1| GENE 18 13926 - 14702 214 258 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 230 1 212 311 87 28 2e-16 MTDALNADHITKVFGGLTAVDDVSLHVGEKELVALIGPNGAGKTTFFNCLTGVGPATTGT VKIGGQEVKKNTKAYKVAQMGISRTFQNIRLFSQLSVLENVLIALTNHYKENFLTAVLRL PAYYKTEEAMEERAKELLKDFDLEDVMYFPAGSLPYGTQRRVEIVRALATEPKIICLDEP AAGMNPEETADLTRLIKHLQTEYGIAVLLIEHDMSLVMNLAERIYVLAEGKLLAKGTPSE IQNDEAVINAYLGGGADV >gi|300497333|gb|AEAT01000037.1| GENE 19 14718 - 15692 1533 324 aa, chain - ## HITS:1 COG:SP0751 KEGG:ns NR:ns ## COG: SP0751 COG4177 # Protein_GI_number: 15900646 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 312 1 313 318 283 56.0 4e-76 MKKNWKYNLCWLILMVAGFYLINTLMLAGVINTFIENMLVTIGINIILAVGLNLVIGFSG QFSLGHAGFMALGAYATGIMTQTMNTAGGFYLSVLVGVVISIVVALLVGIPTLRLHGDYF AIATMGAAEIIRIVINNMKITNGAAGLFNIPQFATWDVVYIFVCLTTIVTVNFIHSRDGR AVISIRENEIAAEAMGVNTTKWKLSAFVLGAATAAIAGSLYASYLQTIVPSTFGIMESIN ILIFVVLGGLGSITGTFVATTLLGVLDAALQSLGVLRMVFYAVALIIIMIFKPGGLFGKW EFSFKRLLTKKQDGDMKEAGKESK >gi|300497333|gb|AEAT01000037.1| GENE 20 15707 - 16585 1215 292 aa, chain - ## HITS:1 COG:SP0750 KEGG:ns NR:ns ## COG: SP0750 COG0559 # Protein_GI_number: 15900645 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid ABC-type transport system, permease components # Organism: Streptococcus pneumoniae TIGR4 # 5 292 2 289 289 285 63.0 8e-77 MQTFFQQLINGLSLGSIYALLALGYMIVYGISKLLNFAHGDVYMLGAYWGYYTINYLHFG FITALITAMIVCGLAGVIIEAVAYRPLRNAPRVAALITAIGVSFFLENGMSYLVTSDTRN FPQVIKRKTFDLGGVTISNIQLIILVTTLILTLGLMYIINYTKTGRAMRSVSTDYDAASL MGININHTVSITFALGSALAGAAGVLIGLYYNSIDPLMGMTPGIKAFVAAVLGGIGSIPG AAVGGFLIGLLETAVQAMGFSAFRDAAVYIVLIVILLVLPGGLFGKKQVEKV >gi|300497333|gb|AEAT01000037.1| GENE 21 16634 - 17857 2021 407 aa, chain - ## HITS:1 COG:SP0749 KEGG:ns NR:ns ## COG: SP0749 COG0683 # Protein_GI_number: 15900644 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport systems, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 14 407 2 385 386 238 42.0 2e-62 MYLIEMGKTIMNFKKAFGVAATTIMSAAALTGCATAKTSSTAGNKSSDNTIRIGVNLELS GSVASYGQQEKKGVVLAAQEINKKGVKIGGKTYKVKLYISDNKSSTSTAASVAAQMANSD KIVAQVGPAATAYATASIANLTKAGVPMVGPSATASEFTQTKSGQTQKYAFRACFIDPFQ GKKAADFMYNTLKKKSVAILADNSTDYGTGLTKSFTKEFKKLGGKVVTTQYFQSGDKDFN STLTTIKGKKPDALYLPGYYTEIGLILKQAREMGLNVPVVGSDGMGSPKLAQIAGKKNAT NVYYTTHFSIKSKEPEVVKFLKTYKAKYGEEPATFSSLAYDSVYMIVDAAKKEGEVSSSA IQKGLASLKNFKGVTGKITMDSKHNPQKSVVVEQMTNGKINKAYTVK >gi|300497333|gb|AEAT01000037.1| GENE 22 18208 - 19473 1646 421 aa, chain - ## HITS:1 COG:L153005 KEGG:ns NR:ns ## COG: L153005 COG0151 # Protein_GI_number: 15673495 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Lactococcus lactis # 5 416 2 412 413 360 49.0 4e-99 MKDKLKILVVGSGGREFAVARALKKSPHVAEVFCAPGNSGMAAIGVKATGIAEDDFKALK DFAIKEDIAWTFVGPEDALVAGIVDYFHAFDLKIFGPNARAAQLEGSKDYALQFMEKYQV PHPRYETFQSAETAISALPDFGLPVVLKEDGLAGGKGVIIAEDQETAESTLTEMFAKGQK QVVLEEFLTGPEYSVFAVMQGGNYRLLPLAQDHKRAYDGDKGPNTGGMGSYSPVPQLSQA EYQEIVDQLVEPTAKGLLAGGYDYHGVLYLGLMMTKQGPKMIEYNVRLGDPETEVVLPRL KSDFAELVAACVNDEEMPAVEEKDEAVLGVILAAEGYPKKPLKGQKLGQLPAEDGIFVDC ANVTGPAADLAGSGGRILMVRAEAADLKEAQEHVYAYLAKLDIPQTFYRRDIGYRATGKR F >gi|300497333|gb|AEAT01000037.1| GENE 23 19490 - 21031 2622 513 aa, chain - ## HITS:1 COG:SP0050 KEGG:ns NR:ns ## COG: SP0050 COG0138 # Protein_GI_number: 15899995 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Streptococcus pneumoniae TIGR4 # 2 513 3 515 515 632 62.0 0 MKCALVSVSDKTNLVPFVKGLVANDYEIVSTGGTKRVLDEAGIPTISVEDVTGFPEILDG RVKTLNPYIHGGLLARRELPEHVATLKEHKITPIDLVCVNLYPFKQTIEKPDVTLAEAIE NIDIGGPSMVRSASKNYRDVTIVVDQADYDQVLAEIEKDGSTSLEIRARLAAKAFRLTAS YDALISQYLTEKAGETAPEKLTLTYDLKEAMRYGENSHQKAWLYEDALPKAFSVLQAEQL NGKQLSYNNIKDADEALRCVREFSKPTVVAMKHMNPCGIGQGNTLEEAWDRAYAADPVSI FGGVIALNRKVDLATAEKMHKIFLEIIIAPDYDEDALAALKTKKKNLRILKLDFSKKDEA TSKETVSVMGGLLVQDQDVLDEDFADWECVTEAKPTQEQLESLLFAWKAVKHTKSNAIVV ANNERTLGVGAGQPNRIDSEKIAIDHAAEALDDRAVIASDAFFPFSDCVEYAGKHGIKAI VQPGGSVRDQESIDMANKYGIAMVFTGVRHFRH >gi|300497333|gb|AEAT01000037.1| GENE 24 21032 - 21613 771 193 aa, chain - ## HITS:1 COG:BH0632 KEGG:ns NR:ns ## COG: BH0632 COG0299 # Protein_GI_number: 15613195 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Bacillus halodurans # 2 187 3 188 188 193 50.0 2e-49 MKVAIFASGNGTNYEVLAEHFQKGDLPGDLTLLFCDHPDAPVIKRAEKFHTPVVTFTVKS CGSKQKYEGKILQVLKDYQIDFIALAGYMRVIGPTILSEYEGRIVNLHPAYLPAYPGLHS IERAFADHPAETGVTVHYIDSGLDSGPAIAQKHVPIYDDDTVDTLEARIHECEHHLYPEA LRKALLKFDEENK >gi|300497333|gb|AEAT01000037.1| GENE 25 21622 - 22662 882 346 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149378138|ref|ZP_01895857.1| Ribosomal protein S7 [Marinobacter algicola DG893] # 6 339 10 338 354 344 51 7e-94 MIVNRYKDAGVDVNAGYELVRRIKGAVASTKRPGYVGNIGGFGGLFDLDSLGYDHPVLVS GTDGVGTKLMIAQKMDKNDTVGIDVVAMCVNDVLAQGAEPLFFLDYIACGHNDPALLASV VQGVAEGCKQAGASLIGGETAEMPDMYAPDEYDLAGFTVGVAEKDRLLSVDTPQAGDVLL GLASSGVHSNGFSLVRKILFKDHDVKLTDKPAELKGKSVGESLLAPTRIYIKSVLPLIKQ GLVHGVAHITGGGLIENVPRMFNDDLRAEIAAGSWEVLDIFNYLKQVGNLSDDDCWQTFN MGLGMILAVPADKKEEAKQLLLASGEKVFEVGHLSERTDGEKIIIK >gi|300497333|gb|AEAT01000037.1| GENE 26 22659 - 24137 2133 492 aa, chain - ## HITS:1 COG:SPy0026 KEGG:ns NR:ns ## COG: SPy0026 COG0034 # Protein_GI_number: 15674270 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 1 471 1 467 484 645 64.0 0 MPYEIKGLNEECGVFGIYNVPDAANVTYFGLHALQHRGQQGAGIVASDGQKLRQFRDRGL LSEVFSNPADLDFLKGNMAIGHVRYGTAGSDSLANVQPFLFHFQDGEIALCHNGNLTNAK TLKKRLEDSGSVFQSSSDTEVLIHLIRRKVRMPFIEALKASLNEVKGGFAFLLMINDTLY AALDPNGFRPLVLGQMDNGSYVVASESCALDAVHAKLVRDVQPGELIIINKDGIKIDHYT TETQLAICSMEYIYFARPDSIIHGVNIHTARKRMGILLAKEQPAPEEADMVIGVPNSSLS AATGYAEAAGLPYEMGLIKNQYIARTFIQPTQALREQGVKMKLAPVRGVVSGKNIVVVDD SIVRGTTSRQIVQMLKEAGAKSVHMRIASPPFKYPHFYGIDISERKDLMAAKYSVSDMCK LIGADSLGFLSIPSLIKAVDMPDTGDAPNGGLTVAYFDGKYPTPLYDYEEQIKEPLNVEP VKEILKKQNRGE >gi|300497333|gb|AEAT01000037.1| GENE 27 24113 - 26335 3195 740 aa, chain - ## HITS:1 COG:lin1881 KEGG:ns NR:ns ## COG: lin1881 COG0046 # Protein_GI_number: 16800947 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Listeria innocua # 4 737 5 739 739 859 58.0 0 MMQEMTPEEIKEKKPYLDWSLSEEEYDYICDKLLHRLPNYTETGLFSAMWSEHCSYKKSK PVLRLFPTKGPRILQGPGEGAGVVDIGDGQAVVFKAESHNHPTAVEPYQGAATGVGGILR DVFSMGARPVATLDSLHFGELDDAHTRWLLNETVAGIGGYGNCMGIPTVGGELTFDDIYK GNPVMNAMSVGLLDVKDMQKGLAQGEGNAVMYVGAKTGRDGIHGATFASHSFDSEHESQR SAVQVGDPFMEKLLLEACLELTQKHADWLVGIQDMGAAGIVSSSSEMASEGKSGMELNLD LVPQRESGMSAYEIMLSESQERMLLCVKKGHEEDVKKIFDFYDLDAVVIGRITNGHNYIL RHHGEVVCDIPVTSLTEDVLEESSEEKQPQHMIDDAAKPAWEPEITDLAKTYKQMLAQPT IASKEMFTQTYDSMVRTSTVVGPGEDSGVLRVRGTHKGIAMTTDGNGRFIYLDPEIGGKR AVVEAAGNIIASGAEPLAITDCLNFGNPNEPEVFWELHHSVMGIAKACEVLETPVVSGNV SLYNETDDKSIYPTPMVGMVGLVKNLDHLVRDSFQEEGDDLYLVGQTGADYAGSELQKML TGEISGSLNDLDLDHIKDYQKRLLAQMEAGHVAGAHDLSEGGLAVSLAESSFGHGIGAEV ACDLTSAELFSETPGRFLVSVPSEYSAEFAAALAADAVKIGQTAGDSLKLTLKDQAADLP VAELKQIWEEALPCLMKSKD >gi|300497333|gb|AEAT01000037.1| GENE 28 26335 - 27009 955 224 aa, chain - ## HITS:1 COG:lin1882 KEGG:ns NR:ns ## COG: lin1882 COG0047 # Protein_GI_number: 16800948 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain # Organism: Listeria innocua # 1 217 1 217 227 300 63.0 2e-81 MKFAVIQFPGSNCDIDLYEALHTVCGADVAYVPSKESSLDGFDAVMLPGGFSYGDYLRAG AIARFTNIMPAIVEMAKAGKPLFGTCNGFQILTEAGLLPGALKRNDSLKFVCKTVELEVA NNDTIFTSEYQKGEKINLPIAHADGSFYADPETLQKIEDNGQVVFRYSKENPNGSLNNIA GITNERGNVLGMMPHPERAVEALLGNTNGLHLFKSILDHAEVKA >gi|300497333|gb|AEAT01000037.1| GENE 29 27009 - 27257 413 82 aa, chain - ## HITS:1 COG:L177031 KEGG:ns NR:ns ## COG: L177031 COG1828 # Protein_GI_number: 15673514 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component # Organism: Lactococcus lactis # 1 82 1 82 87 70 45.0 1e-12 MTTVRIYVTYKRSVFDPQGEAITNSIHSLGHDEVKGVKVGKFFDVTIEEGDKPVAETVKE ISEGLLVNFNMETYSYKILEEK >gi|300497333|gb|AEAT01000037.1| GENE 30 27262 - 27984 1117 240 aa, chain - ## HITS:1 COG:lin1884 KEGG:ns NR:ns ## COG: lin1884 COG0152 # Protein_GI_number: 16800950 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Listeria innocua # 3 233 4 233 237 230 50.0 2e-60 MAELLYQGKTKEMWTTDDPEVLRAVYKDDATALDGLKHDVFQNKGELDAEISSLVFEYLM KHGVKTHFIKRLSKNEQLVKKVKMIDLEVVTRNIAAGSFCKRYGLKEEGKKLDTPVEELF MKSDALHDPLMNESDAIAFHLLTHEEHEQIWEISRQVNQLLIKLFADAGMLLVDFKVEFG TLPNGEVVLADEFSPDNCRLWDMETKDHMDKDVYRRQIGNLIDVYERVLARLKDALAKED >gi|300497333|gb|AEAT01000037.1| GENE 31 28295 - 29590 1949 431 aa, chain - ## HITS:1 COG:L88187 KEGG:ns NR:ns ## COG: L88187 COG0015 # Protein_GI_number: 15673623 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Lactococcus lactis # 1 428 2 429 431 607 68.0 1e-173 MIERYTRPEMGAIWTDEKKYECWLAVEIAADEAWSKLGYIPAEDVEKIKQNAKFSVDRIN EIEAVTHHDVIAFTRTISESLGPEKKWVHYGLTSTDVVDTAQGYQLKQANDILRKDIQDF IDVLAKRALEFKDTVCMGRTHGIHAEPTTFGLKFARWYSEMKRNQERFEHAARGVEAGKI SGAVGTFAEVDPEVEAYVCKKLGLHAQEISTQVLPRDLHAEYIAAIALVATSLENIATEI RSLQRTEIHEVEEHFAKGQKGSSAMPHKRNPIGSENICGMARVLRGNVVTAYEDVTLWHE RDISHSGAERVILPDSTIGLDYMLNRMGKILANLDVFPETMKKNMDKTLGLIYSGRVLLK LVESGMSREAAYDLIQPYTAKCWAEQVPFRPLLEADPTIQKQLTKADLDDAFDYHWHLRH VDDIYKRLGLE >gi|300497333|gb|AEAT01000037.1| GENE 32 29634 - 30695 1225 353 aa, chain - ## HITS:1 COG:lin1886 KEGG:ns NR:ns ## COG: lin1886 COG0026 # Protein_GI_number: 16800952 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Listeria innocua # 1 351 23 373 374 367 49.0 1e-101 MLAFDAKASGMKVIILDPTPACPAGQAADDQIVAEYSDIDAIHELAFRSDVLTYEFENVD LDALESVKDQVFIPQGTKLLYTTNNRIREKTFIQSAGCEVAKFRAVKNRADLDAAVNDLG LPAVLKTCEGGYDGKGQVVLKAAADLDKTADVLACGDCILEKFVDFRMEASVMVGRNSDG QVTVFPVSENINQGEILHESIVPARISPDLAQKAQEAAVKIAEAIDLKGILGVEMFVTKD DKIVINELAPRPHNSGHYSIEACNFSQFSVHNRAICNWPLPKIKLLSPVVMVNVLGQHVA GTENLIAEKPQWSFHDYGKGEVRRDRKMGHVTILTDDVDKTLAEIAATKVWDV >gi|300497333|gb|AEAT01000037.1| GENE 33 30748 - 31215 684 155 aa, chain - ## HITS:1 COG:BS_purE KEGG:ns NR:ns ## COG: BS_purE COG0041 # Protein_GI_number: 16077710 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Bacillus subtilis # 1 154 9 162 162 173 60.0 1e-43 MGSKSDWGYMQEACKLLDKFGVDYDKQVISAHRMPEEMFAFAQKAAENGTKVIIAGAGGA AHLPGMIAANTPLPVIGCPAKTSALGGMDSLLSIVQMPAGIPVATTAIGPAGAKNAALLA MQILGIEDKELQQKIVDYRKEMHDQAKESSADLVY >gi|300497333|gb|AEAT01000037.1| GENE 34 31399 - 31653 507 84 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1376 NR:ns ## KEGG: LDBND_1376 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 84 1 84 84 142 91.0 6e-33 MDITGFFKDGRLQVIPRKQKAKEVLFEALIDRFEFGRDYSEKEVNEVLAAVYDDYAILRR YLVDTGRLERDPYGQHYWRAEKKD >gi|300497333|gb|AEAT01000037.1| GENE 35 31654 - 32628 1022 324 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1377 NR:ns ## KEGG: LDBND_1377 # Name: not_defined # Def: permease of the major facilitator superfamily # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 324 72 404 404 545 95.0 1e-154 MASGIIRALGLIILALSPMNLLWMTVSGVLTALGDSLQSGTMTSWIANKAVEHGEKDQLG AIFSGYSLIGTPLTMAATFVGANILGNIRLDLPLLIGAAFLLATSLTIIPLLKYDSQNLA EAEEGIPKLNLVADVKYTVKQEQKTFAWILLLLPVAIISAGPLDQWQMYFQRGKTVNSGT ISVLMSLAGMLAISLYNRYVSKKPLSNKGQTRLIVVSTVMMAATLLGVVGLKNWYYGSLA LFMLHTMFGSLENMLGGIVLQTTIMSVANALDAGAEVVILAINGFLSDRYGIGFAWVSLA VLGLVIFLLAIFGMQSKKLEVEEI >gi|300497333|gb|AEAT01000037.1| GENE 36 32698 - 32841 60 47 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1377 NR:ns ## KEGG: LDBND_1377 # Name: not_defined # Def: permease of the major facilitator superfamily # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 47 1 47 404 90 100.0 2e-17 MKKYKYIFYYVSILYTIGTSLWSGTIYLFMRHNGYSYSQINLFLEIF >gi|300497333|gb|AEAT01000037.1| GENE 37 33063 - 33524 634 153 aa, chain - ## HITS:1 COG:no KEGG:LBUL_1345 NR:ns ## KEGG: LBUL_1345 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 144 14 157 157 246 94.0 2e-64 MQVKRIWTFAVSNGKRENNRYFLNADVIDDNTMLALFHSKSKHRFEIWKITRTGNSFKVK EAATTDGDLISNSSQVQSFTYNVAHKCYYIAFNDYLFKIDAKSNLVNYYHFNAKREVEGL ASYKSKIYIAMNKRAEVFDSNMAKQPQEQALKK >gi|300497333|gb|AEAT01000037.1| GENE 38 33592 - 34323 776 243 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1384 NR:ns ## KEGG: LDBND_1384 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 234 121 372 603 159 44.0 1e-37 MATTKKFKLAHVQSRSYKLARGRRYYYVYVDGRGVGYVSERAFARSKMSLVKSVSLVNNE LDTNGFVTTDAINYVTDKHGSVVDVNSVKRSADRISEKTPGRYVVTYCYGKASGKVAVTV RNDANEGISKADAKLGKGGNVGKTWFPHELAFRSNYNAQVSSHTYVGTDKHGKKTAKLTT KFYEPNSFSLLEGSQETNVRGNVQGLDVYGQDMVTTNFYGGLESSKDGARGHIVCRVNFP LYL >gi|300497333|gb|AEAT01000037.1| GENE 39 34575 - 36380 2774 601 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1384 NR:ns ## KEGG: LDBND_1384 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 601 1 603 603 923 93.0 0 MRHFALGMMTSAALMAGLASQVQASSKDFSKSTKTDLVTKIMGDKSYQVYSSLKLEEVTK KVKTKTKEKKKYTVKKKVAVKKSKKGKTKYKTVKQVKYKWVTKTAYKNVKKKEWKFGKEL TASADFRYAHVQSKSYKVKGGKRYYYIYVDGRPVGYVNEKAFALSKANVVSQVSLVNNPS DSVGFNAEDAINYVTDQHGSLVDNDSVEISCKSAKLNISDTGYVSSRKAGTAVLTFKYGK AKATSKLTVRGDAKEGISSADVTPVKTDLPEIKTWSASDGASLSSSSTITSEDAVSSSHK YWATNMSGNAKGADIETIFYHPAVLSAPGSSNLETKVSSAVQGIDFYDNDLVTSNLDLGQ ADNREARGHMVYYNMRGVKKYNWQLIPSKMLSFNTWLSYIKNIKVSPYMKLGHGQSVGST KKYVYVLANWNRSNNWSNSQELIRVKKSTMEIDKIWTFKVWNGSAKYPRIFLNADVIDDN TLLALFHNASKHRYEYWKISRNGDSFKAKEVGATGSDLISNSAEVQGFVWDSAYDVYYIA FNDYLFKIGAGLDGGTEAGKLLNYYKFDTGREFEGLGSYKGELYVNLNHPTETLKVDYIT K >gi|300497333|gb|AEAT01000037.1| GENE 40 36565 - 38703 2834 712 aa, chain - ## HITS:1 COG:BH3387 KEGG:ns NR:ns ## COG: BH3387 COG0550 # Protein_GI_number: 15615949 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Bacillus halodurans # 4 711 5 716 721 373 35.0 1e-103 MTTVILAEKPSQARAYAAAFTQSQKGEGQIKVADPILPADTVITYGFGHLVEMALPEAYD ASYKRWSLKKLPIFPDQYKYLVPRDKKKQFNIVANLLKRADTIVIATDSDREGENIAWSI MRQAGIDLKQKRLFRLWINSLEKAAIREGFQNLRPGKDYYYRYKEAQTRQISDWLVGMNG SPLFTLLLRKQGGKGTYSIGRVQTPTLYMVYKRDQEIANFKPEKYWLLMADFWQGRKKFT GRLLPETKFKSPAELEQFLLAKGGSLGKQTGRVAKVDKEQKSLASPRLFSLSSLQTEANR RYHASASQVLQAVQNLYENKFLSYPRTDCNYITDNEYAYLAQNLDRYQGLLSNSAEVKEQ MKPLKAEKRYVDSGKVQEHHAIIMTKTVPSQAQMGKMSKLEGQVYDLVLRRTLEMFLKAY VYEKTTALINVGQLTFKASGNVSVNLGWKILEGPVKDAQLPPLEVGQELTAKLKEQEEET KPPAKFTEGSLITAMKTAGKTLDDEEAQAILKDVEGIGTEATRASTIEILKKRGYMQSRQ NKLSVTPEGTILCKAAEAEPLLVSAQMTAQWEKALKQVGAKERSQDNFLGQIKKFISKMI TEVPGKIQVDQGLQEEAQTRQAKTAAIGPCPVCKQGEITDKGKFYGCSNYRGGCHFTLPK KFAGKNMGKRIVKTLISKGKTDKLDGFVSKKSGQRYSAKLQLEGDKLSLVFD >gi|300497333|gb|AEAT01000037.1| GENE 41 39205 - 41583 3442 792 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1386 NR:ns ## KEGG: LDBND_1386 # Name: not_defined # Def: xaa-pro dipeptidyl-peptidase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 792 1 792 792 1597 99.0 0 MKYNQYAYVETSPEKATEELLAINFLPENYSSLSFSELLAVLTGNVLAEATTRQAKDAKL AEFAVDDQTDLAAFLLDTPTAITASQFANVALQLLGYHPNYDYSLTDPLTCGKQHALPAF KDLTSKEELIFTFYRLLNTRSKNGQILLDVMAGKGYFTQFWGEGKFMFFNGKSLPVFDTS QVIREVVYVQSDLDTDGDGKGDLLPVTVFRPVESQDQLKVPALYTASPYFGGIIDNVKTN HNVDENLTDATTWTNPKYVAKPLVKSPAPSDQDVPATELATGQSSYGLNEYLLARGFASV FSGAIGNRHGDGIRITGSPEETISQKEVIEWLTGDRVAYTDRTRHFETKASWCSGNVGMT GRSYLGTLQIAIATTGVKGLKTVVSEAAISSWYDYYREHGLVVAPSECQGEDMDKLAEVC QSNLWDGGNFTAKKAYEAEQAELLAAQDRATGQYSDFWESRNYRHHADGIKCSWISVHGL NDWNVKPKNVYKIWQKVKQLPVESHLFLHQGPHYNMNNLISIDFTDLMNLWFVHELLEVE NGAYEQWPKVMIQDNLEADKWHAESDWANDLGQASLYSPTADGDLSTVENGTGQLTFTDL GGTEFKKAGISETDWEYQFISGEEKWAKASLRFESEEFLHPTTLVGRPKVRVRVAANKTV GQLSVALVDLGTRQRLTATPKIFARGNQPFGYRFEADSLQEFVPDKATKAKLITKAHMNL QNYQDMKQPSKLEAGQFVDLEFELQPTYYTLPAGAKLGLIIYSTDQGMTKRPLETEDYTV DLAGTALLLYRK >gi|300497333|gb|AEAT01000037.1| GENE 42 41695 - 42465 911 256 aa, chain + ## HITS:1 COG:L180636 KEGG:ns NR:ns ## COG: L180636 COG0477 # Protein_GI_number: 15673521 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 4 84 15 104 457 70 48.0 3e-12 MEKSSKVNLAIFSAGLMTFIGILNETSMNVTYPLLVKEFHQPLATVQWITTAYLLTVTIV MGTTAYLLLLGLALFAIIYALSLIGTSSLISGLVLLPDSCVGAVISPFAGKLADKRDFKF PLTLGGCLFLLGNCLLLVLQPLLTPVLIVVCHIVIRSGFNLSFANTISNASTLVDRKNVA DVNSSFNMLQQFAGSVGVSLATALISLAQKTGQGALAQRSYQGGRYDFIMFSCLALVTLL AIWQNFRLQDKKNKGN >gi|300497333|gb|AEAT01000037.1| GENE 43 42773 - 43555 721 260 aa, chain + ## HITS:1 COG:TM0881 KEGG:ns NR:ns ## COG: TM0881 COG1897 # Protein_GI_number: 15643643 # Func_class: E Amino acid transport and metabolism # Function: Homoserine trans-succinylase # Organism: Thermotoga maritima # 4 256 37 288 304 162 36.0 4e-40 MSKKIGILNLMHDKIDTQKRFSHVIKEASPETEITYFYPQSHYLNRPRPQNWPAEPLNLK TVAKLDGFIVTGAPIELLPFSEVDYWEELTKLFDLLKAKNIPQLYVCWGAMAALYYFYGI GKHPLPEKIFGIYPQEILAPAPLLSGLVTGFRAPHARYAEMNRSEIEQEKALTINAATPD GHLTLVTGPGQQVFLFSHLEYGPQAFSKEYQRELSAIGGDDRKLAKPQRYFADEAAMSLP QFTWESSQQHFFKNWLQTIK >gi|300497333|gb|AEAT01000037.1| GENE 44 43598 - 44521 1034 307 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 6 307 3 305 308 402 66 1e-111 MSTDRIYGNILETIGHTPIVKLNRVVPEGAADVYVKLEFFNPGGSIKDRIALAMIEKAEK EGKLKPGDTIVEPTSGNTGIGLAAVASAKGYHLIIAMPETMSEERKKIMRAYGAELLLTP GKDGMPGSIALAEKLVKEKGYFMPMQFENPANPEIHELTTGQEIVNAFAGDLPDAFVAGV GTGGTLTGIGRALKKAGDVKVYALEPAESPLLKEGKKGPHKIQGISAGFIPKTLDQSIYD GIVEVSSDDAFATAREVARLEGFLPGISAGANIHGAIELAKKLGAGKKVVTVAPDNGERY LSTALYQ >gi|300497333|gb|AEAT01000037.1| GENE 45 44691 - 45683 1073 330 aa, chain - ## HITS:1 COG:CAC3005 KEGG:ns NR:ns ## COG: CAC3005 COG1816 # Protein_GI_number: 15896257 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Clostridium acetobutylicum # 5 329 13 334 334 171 34.0 2e-42 MKKLIDLHLHLDGSVPYQTVRELLAKEGRSLPEADLRKRLSVSPDCRNLDEYLDKFDFPL SLMQTAKNLRLIVRELLAELRGQGLVYAEIRFAPQKHTETLTQAEAVQAVLDGRDDFYAW QKGQEGDDLHANFLLCLMRLVGQDEANWETLRVAKEFKDQGVAGLDLAGPENEEVANRKY APFFQQAREWGIPYTIHAGEAMGPESMREALALGTKRIGHGIRCQEDPSLVKELAEDGIT LECCASSNLNTKVFDQIAEYPLRSMLGQNLRVTLNTDNMTVSVTNLPREYQLMEEQGLTK SEEKQLYLNSVRAAFASQEEKDRLLALLEK >gi|300497333|gb|AEAT01000037.1| GENE 46 45900 - 46241 633 113 aa, chain - ## HITS:1 COG:no KEGG:Ldb1464 NR:ns ## KEGG: Ldb1464 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 113 1 113 113 213 96.0 2e-54 MEDIFFTVTGCNHYFGTEAFKPRMKVTLYKEPDNKYDKEAIRVEARALGKIGYVANSPYT VLGESRSSGRLYDLIDDGATGRVLYVLPQGLVYELEETGFEKVKKIYKKHRNY >gi|300497333|gb|AEAT01000037.1| GENE 47 46434 - 47363 1257 309 aa, chain + ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 282 4 280 283 183 33.0 4e-46 MKIAVLTDSSAYLSKEQQEKYHIDVVPIPLIWDGKTYYDLVDISYEEFYEKISTSQTLPT TSQPSLGQIMEFVDRYVEEGYTDVIILPLSSGISSSYNNLVNYAAEEDRIKIHPFDCRTT CAGLADCAILAARLVNAGAGVDLIMKDLEDLRKTIGVRFLVDNLGHLKRTGRLSNAASFI GTLLHITPILAMDVQKTGHISAIAKERQYKRAYKHVQNDFRELTENKDYPIQATIFDAAN PDRGDEWIKDYQAAFPKDKFDRSIIGPVVGVHCGKNAIAIIWCRDIDSYFDQDGQPLPDI ESAEVGEKF >gi|300497333|gb|AEAT01000037.1| GENE 48 47452 - 48141 1011 229 aa, chain - ## HITS:1 COG:L124252 KEGG:ns NR:ns ## COG: L124252 COG0620 # Protein_GI_number: 15672700 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Lactococcus lactis # 4 227 148 368 369 288 62.0 5e-78 MLFRDNRSDNWPEFYASWEDYLADLGKAYNETIKHFYDLGCRYLQIDDTTWAFLISKLNE SQDNPEEHAKYVHLAESAVTVINAALEGLPEDLTVTTHICRGNFKSTFLFSGGYEPVVPY LAQLNYDGFFQEYDSDRSGDLAPINQIWNGRENVKLVLGLVTSKFGQLEDKDAVIARLKE ASGYVPLANLCLSPQCGFASTEEGNTLTEEEEWNKLKFIKEVADEVWGE >gi|300497333|gb|AEAT01000037.1| GENE 49 48298 - 48597 277 99 aa, chain - ## HITS:1 COG:L124252 KEGG:ns NR:ns ## COG: L124252 COG0620 # Protein_GI_number: 15672700 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Lactococcus lactis # 57 99 47 89 369 64 67.0 5e-11 MKRLKSLAFVYASIFSLLIGLGAGIFLTISSELISLFWSKRTLTHPGLLLLQCLLWISDL VEKEKAVGLKAVTDGEFRRSWWHLDFLWGLKGGIKYDYQ >gi|300497333|gb|AEAT01000037.1| GENE 50 48846 - 50621 3025 591 aa, chain + ## HITS:1 COG:SPy0470 KEGG:ns NR:ns ## COG: SPy0470 COG4716 # Protein_GI_number: 15674587 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Streptococcus pyogenes M1 GAS # 1 590 1 590 590 889 69.0 0 MYYSNGNYEAFTDARKPKDADKKSAYVIGGGLAGLAACVFMIRDGHMDGKKIHLLEEEAL AGGSLDGTKRPEYGYIIRGGREMENHFECLWDMYRSIPSLEIPGASYLDEYAWLDKDDPN SSNCRLIHHRGDRVPTDGQYGLGKCAGEIVKLIMTPEDKLEGISIEDFFSDEFFETNFWA YWATMFAFEKWHSVIEMRRYAMRFIHHIDGLPDLSALKFNKYNQYESMTKPLLAYLESHD VDICYNTQVENVVVDTSNGEKVAKKLILTRDGEHQEIDLTPDDLVYVTNGSIVESSTYGT HHTPAPITHKLGGSWHLWQNLAEQDEAFGHPEVFCENIPERAWFVSATMTMKDATLEPYF ERLTKRDIHQHRVNTGGIITVTDSNWMLSFTIHRQPHFKDQKENETVVWIYALYSDTPGN YIKKRVVDCTGEEITEELLYHLGVPDDLIKKYAGDDYVNTVPVYMPYITAYFQMRKKGDR PAVVPAGSVNLAFIGNFAESPTRDTVFTTEYSVRTAMEAVYTLLNVDRGVPEVFDSVYDI RELLKATYYLNDKKPIDQMDLPLPKIVVKGAMKKVQGTWLEELLKEAKLLE Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:13:26 2011 Seq name: gi|300497313|gb|AEAT01000038.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00092, whole genome shotgun sequence Length of sequence - 20352 bp Number of predicted genes - 19, with homology - 18 Number of transcription units - 6, operones - 4 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 118 - 161 2.5 1 1 Op 1 3/0.500 - CDS 203 - 445 482 ## COG0236 Acyl carrier protein 2 1 Op 2 . - CDS 507 - 1499 1526 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 3 1 Op 3 4/0.500 - CDS 1525 - 3564 2181 ## COG1200 RecG-like helicase 4 1 Op 4 9/0.000 - CDS 3564 - 5189 2294 ## COG1461 Predicted kinase related to dihydroxyacetone kinase 5 1 Op 5 . - CDS 5248 - 5610 435 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 5639 - 5698 4.1 + Prom 5694 - 5753 6.3 6 2 Tu 1 . + CDS 5786 - 5971 314 ## PROTEIN SUPPORTED gi|104774265|ref|YP_619245.1| 50S ribosomal protein L28 + Term 5981 - 6023 10.1 - Term 6031 - 6066 3.1 7 3 Tu 1 . - CDS 6072 - 7643 1605 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 7684 - 7743 6.9 - Term 7735 - 7790 3.4 8 4 Op 1 . - CDS 7808 - 8779 1159 ## gi|300811697|ref|ZP_07092172.1| LPXTG-motif cell wall anchor domain protein 9 4 Op 2 . - CDS 8742 - 8939 102 ## 10 4 Op 3 . - CDS 9003 - 10049 760 ## LDBND_1333 hypothetical protein - Prom 10203 - 10262 8.6 - Term 10274 - 10325 8.1 11 5 Op 1 . - CDS 10352 - 11035 948 ## COG1564 Thiamine pyrophosphokinase 12 5 Op 2 7/0.000 - CDS 11065 - 11958 850 ## COG1162 Predicted GTPases 13 5 Op 3 17/0.000 - CDS 11959 - 13974 2405 ## COG0515 Serine/threonine protein kinase 14 5 Op 4 3/0.500 - CDS 13955 - 14617 739 ## COG0631 Serine/threonine protein phosphatase 15 5 Op 5 20/0.000 - CDS 14716 - 16032 1481 ## COG0144 tRNA and rRNA cytosine-C5-methylases 16 5 Op 6 4/0.500 - CDS 16022 - 16969 1026 ## COG0223 Methionyl-tRNA formyltransferase 17 5 Op 7 3/0.500 - CDS 16982 - 19363 2663 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase - Term 19379 - 19417 5.1 18 6 Op 1 25/0.000 - CDS 19426 - 19647 384 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 19 6 Op 2 . - CDS 19649 - 20263 684 ## COG0194 Guanylate kinase - Prom 20285 - 20344 2.7 Predicted protein(s) >gi|300497313|gb|AEAT01000038.1| GENE 1 203 - 445 482 80 aa, chain - ## HITS:1 COG:aq_1717a KEGG:ns NR:ns ## COG: aq_1717a COG0236 # Protein_GI_number: 15606797 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Aquifex aeolicus # 8 80 5 77 78 63 49.0 7e-11 MTEAEIFDKIATLIADNFQLDKDKITMDTNFTKDLDADSIDLVEFIMQLEDEFGAEIPDE DAAKIITVADAVAYIKSHQG >gi|300497313|gb|AEAT01000038.1| GENE 2 507 - 1499 1526 330 aa, chain - ## HITS:1 COG:SP0037 KEGG:ns NR:ns ## COG: SP0037 COG0416 # Protein_GI_number: 15899983 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Streptococcus pneumoniae TIGR4 # 1 329 1 328 330 316 52.0 4e-86 MRKIAIDAMGGENAPEAIVEAVLKAKPELPEDKFIFFGDEGKLKELLPAGDDQIEIVATT EVILDEDEPVKAMRTKKDSSMVVAANWVREGKADALLSLGNTGALLTCGIFIVGRIKGVA RPGLMPTMPVESSDDGFNIIDVGANATSKPEYLLQWAEMASYYAEKVRGVSKPRVALLNN GAEFDKGDDLHKEVYQLLQDSSLNFTGNIEGHELLQGKADVVVTDGFTGNAVLKSIEGTA SVIIHMLKDGLLNNGVKAKLGALLAKDALKSVASRFDTAKYGGAVLLGLNSPVVKQHGRS DARAVYYAVKQIDKILTEDLTNTFKQEFSK >gi|300497313|gb|AEAT01000038.1| GENE 3 1525 - 3564 2181 679 aa, chain - ## HITS:1 COG:SP1697 KEGG:ns NR:ns ## COG: SP1697 COG1200 # Protein_GI_number: 15901531 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Streptococcus pneumoniae TIGR4 # 7 658 3 658 671 602 48.0 1e-172 MTLNEAIFRPVTALKGVGAKTAEALQSLGIYSIYDLLFYFPYRYDELENLPLDQLEDGQK VMLKGIVATNPYQNYFGYHKSRVSFKLRIDHDIIMVNFFNQPWLTKQLSVGQEIAVYGKY DLRKQSLSAYKLLANKNSDDGMAPIYSVNRQIKQKKLQTMIDLAIAESMDEMGNAVPEDL RKHYRLMADQDLVIAMHHPKDLTEAKEARRSAVFREFFLFQMQLALMSSQNKSHSGYAKH YDLEEIGKLTKSLPFALSPDQKKVINEIFADMFVDQQMQRLLQGDVGSGKTVVAVFAIYG AVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTKTMERREIYKELADGSI NVVIGTHALIQEQVAFKKLGLVIIDEQHRFGVVQRLALINKGDRPDILAMTATPIPRSLA LTVYGDTALSEIRHLPAGRKPIKSYWKTSSQLDEVYSLMRQQLAEGFQIYAVTPLISESE TIDLENAEALHDRLAGEFPDQEVVLLHGKMAAADKEQIMDRFAAGEVDILVTTSVIEVGV DVANANLMVIFDADRFGLSQLHQLRGRIGRGQTQSYCVFLADPKTEAGKQRMKIVAETND GFKLAEEDLKMRGEGDLFGKAQSGLPEFRTGSVVSDYQVMVVARDEAKRIVQADPDLKAE KLADLQAVIKYKKIVQARA >gi|300497313|gb|AEAT01000038.1| GENE 4 3564 - 5189 2294 541 aa, chain - ## HITS:1 COG:SPy1885 KEGG:ns NR:ns ## COG: SPy1885 COG1461 # Protein_GI_number: 15675702 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Streptococcus pyogenes M1 GAS # 1 541 12 554 554 536 55.0 1e-152 MVRIASHRMSKNVQFVNDLNVFPVPDGDTGTNMNLTMESGAKAVSENASSSVGDLTESLA KGMLMGARGNSGVITSQLFRGFYKATQGKTTLNAQELANAFSNGVATAYKAVMKPVEGTI LTVARVGAQAGANKANETDDVEEVMQAIVEGAKEALKSTPDLLPVLKQVGVVDSGGQGLV FIYEGFLEGLLGENFDDKYVPDADDMNSLINATHHQAVQGQLATSDIANGYCTEIMVDLK ADVPNKKPFDLEEFRSYLSELGDSLLAVSDGEIAKVHVHTEYPGKVFLYGSQFGQLGKIK IDNMRIQHETIVDNEQEQQESVDFAVIAVASGSGVRKLFESEGVNRIISGGQTMNPSTQD IIDAITKSGAKQAIILPNNGNIIMSAKQAAEVAEIPVGIVPSKTIQQGLTAMLAFNPEAS VDANVEAMTDELGSVKSGEVTRATRDTEINGVEIHKGNFIGIVDGTIVVDDVDPIVATVA MTEKMLDEDSEIVTVMYGSDATEEEAQAVVDRLEAAHEDDDCEFEIHDGGQPVYNFLISV E >gi|300497313|gb|AEAT01000038.1| GENE 5 5248 - 5610 435 120 aa, chain - ## HITS:1 COG:lin1929 KEGG:ns NR:ns ## COG: lin1929 COG1302 # Protein_GI_number: 16800995 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 120 1 120 121 119 54.0 2e-27 MAVKIKTKYGLIDISNGVIATVVGGAATSNYGVVGMASKNAIRDGVDSILSRANYKRGVV VKSDENQVTVDVYIIVGYGLKISEVSRNVQDSVKYNLRSQLGIDTKAVNVVVQGVKVLDD >gi|300497313|gb|AEAT01000038.1| GENE 6 5786 - 5971 314 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|104774265|ref|YP_619245.1| 50S ribosomal protein L28 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 61 1 61 61 125 100 2e-28 MAKDFVTGKKTTFGNTRSHALNSSSRSWKPNLQKVRILVNGKPKRVWVSTKTLKSGKVTR V >gi|300497313|gb|AEAT01000038.1| GENE 7 6072 - 7643 1605 523 aa, chain - ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 3 504 4 511 535 142 26.0 1e-33 MTLKYASKWKLLVFAVFAAAKALQAVFIAYVFQEFINFAGNPKGSLLQLTIKAVVGIVLF AFLALIYQIMQANIIKDVNLKIKEQATKYLLYSDNSDPKFDLSFMTNDLKQVESHRVEAE LDIIFNGLQFIAAFAAAMLSSWALSLIFLVASLAPGLLQNIFGPKIEAASSAWEGENSKY TEAMTDTINFSAFARLYDAEDSIYSRMLHYSQRMETALAKMKKAEMVTTEVITSFAYVCS MIIPFSLGIYFVTQGQITLGTFMMISQLANNFINPIVGIFSSVNDIKTSNPIWEKFTAVA DFTAKESAADRDEFKELSLDDASVQRGDRKLLNDLDLTVKNGEKVLLEAPSGWGKSTLLN VLVGRIKLADGDYEINGEDANGDWSKDHEYFSFVQQKPYILDDTIEYNISLGREVSREDL LAVCQKAGLTSLIEEKGLDYQVGKEGKNLSGGQGQRLEIARALLAKRPVLLADEATSALD PRLSKQIHQTILQNFPGTVIEVAHKISDEEIAMFDRVVNLAEK >gi|300497313|gb|AEAT01000038.1| GENE 8 7808 - 8779 1159 323 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300811697|ref|ZP_07092172.1| ## NR: gi|300811697|ref|ZP_07092172.1| LPXTG-motif cell wall anchor domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] LPXTG-motif cell wall anchor domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 4 323 1 320 320 250 99.0 1e-64 MKLLLRLSRQKTESSDKLTAAEAAATKAAEDVTSAQTAYDQTAAVYQSKQAELIAAQDAL AAEKEKLTPLATDAQAKQATLDEANEALGQAQTDLAAAKAKLLSAKEKTADAQKALEADK EASADAQKAAEEASAADKAAQSKLASVNKEAAEKAAILAEAEKTATSEKAKLAELDAAAE EAAQAAEKARAAVQTAQSKQAAAEKKLADLQAVQAEVQAANDAVEAAKKALAEVQANLAS KQADSAAAAKANEAADLALTEAKKHLAILEALEEANKPSETPTTPSDNKPSESQNKSAFL AGIVALLASASLFAFGRRKKNEK >gi|300497313|gb|AEAT01000038.1| GENE 9 8742 - 8939 102 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTKAQEATSAAQKTADEKADALKAANAKLAQAKQELASAESNLSAKQAALTTANETLAAA KQAKD >gi|300497313|gb|AEAT01000038.1| GENE 10 9003 - 10049 760 348 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1333 NR:ns ## KEGG: LDBND_1333 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 78 1 78 80 93 89.0 1e-17 MADQEGKVSRAQDKVDHAQKAVDQVNGQVKELTDADNEAKAASDTANKDLAAKKAAESEA EQEYQALPKVVANDALKQATLAFANAQKQYNNKEIDEATYKQAINTWADAMAAGMNLNTY YGLDSDRNVNVDLNNFTQEQQEELNAYLVQLLNSARTVLGTADLAGNVVGSVGANAAASE IAVGYRNDRWNSFVNHHDNAAVNSVAKKYGLAVPENSSGQLIENLHTLLMGKFADQDHIN MYDAKKSVYMGVIGMLFDDYKNGNKMGHAVSLLGLNVLNYDKTNLNLTTYIGVSSDGTDV AEGYHLQQYHFIVVPNLTDQVTTTTTTDDNGTYTSVTILPGRISDAST >gi|300497313|gb|AEAT01000038.1| GENE 11 10352 - 11035 948 227 aa, chain - ## HITS:1 COG:lin1931 KEGG:ns NR:ns ## COG: lin1931 COG1564 # Protein_GI_number: 16800997 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Listeria innocua # 5 220 6 214 214 112 35.0 6e-25 MDAAVLLGGPKEEWPADLKEQLKQAQAKGDLLIGVDRGALLLLELGFKPDLAIGDFDSLK ADELAWVEGMVADIRYSVPKKDWTDSELMLGIAFGDYKIDQLKVYGATGGRLDHAAINAF GILNPDLRKYANQLTLIDKQNLIFYRQAGSYEIKQQDYSYFGLTCLLPVEDLTIEGALYD LAPYSGDYLRSFTSNEFLPDKDSCRLSLKKGLVAVVYSKDLDRYQMA >gi|300497313|gb|AEAT01000038.1| GENE 12 11065 - 11958 850 297 aa, chain - ## HITS:1 COG:BH2503 KEGG:ns NR:ns ## COG: BH2503 COG1162 # Protein_GI_number: 15615066 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Bacillus halodurans # 6 288 3 287 294 243 45.0 3e-64 MAEIVQGTVVSLIAGYYDVQTPAGVVRTRARGVFRKNREKPQVGDSVQVKLDEQGLAYLV KILPRKNRIGRPAVANVDHVLLVISAVEPDFSTALLDRFLVFFAWQGVEVTIYLSKSDLL EKEKLAEIESQLAYYQKIGYRVYLDRESLAAELPKQIGGSEIWTLAGQSGAGKSTLLNFI KEDAGQATGAISTSLNRGKHTTRTVTLFKLGEGFLADTPGFSAIDLTPIKLNELCTYFKE FNALSTGCKFRGCQHLHEPKCAVKDQLALGEIAAFRYDDYLTIRTEIEEGRMPEYLK >gi|300497313|gb|AEAT01000038.1| GENE 13 11959 - 13974 2405 671 aa, chain - ## HITS:1 COG:lin1934_1 KEGG:ns NR:ns ## COG: lin1934_1 COG0515 # Protein_GI_number: 16801000 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Listeria innocua # 8 304 4 301 342 344 58.0 4e-94 MARVINKGYLLGDRYRIVDTLGEGGMANVYLADDIILKRQVAVKIIRLDLQKDSQVLARF QREALATSELSHPNIVSVFDVGTDHGLPYMVMEYVKGPDLKDYIRENSPIPLPQVIKIMD QILSAMELAHKHNVIHRDLKPQNILMDEKGNIKIADFGIAVALNQSAITQTNSVLGSVHY MSPEQTRGGMVTKQSDIYSLGIILYEALTGHVPFNGETPVAIALKHAEDDIPSLRKQNKA IPQALENVVLKATAKDPRDRYASVAEMKADLDSSLDPSRAGEAIYRPSHGNNDETKILPA LNGKVMQAEKAKEGKAEEPKKRSFWASIKKYKWWWIGSLFPVFAILLFMFLAVGHNNVRV PDVVNMTEKAAKTSLKSSGLAVGAVKRTYSSDVKKGKVISTTPKANSPVDKGEKVNLLVS KGPNLTKVPDVEGLYLSTAKKKLNKLGFKVKSREAPSNEYLPGLIISQSVKAGRKVDASK TTITLVVAVALEDQPKPSSSSSSKKATFKLADLTGKSLEDAQSYAKSKKLNVKVEKDHSD SVDSGDVISTDPAAGSEVSEGDTLTITVSKGAEKKEVKKTFTVDYQAAESSSSSSESSSS SSSSQGNHVRIYIQDDNHSLGNIYRDLYITKDTDFTITFSVTKGDGKIKIVRDDQTVVDE TISADDSESGN >gi|300497313|gb|AEAT01000038.1| GENE 14 13955 - 14617 739 220 aa, chain - ## HITS:1 COG:BS_yloO KEGG:ns NR:ns ## COG: BS_yloO COG0631 # Protein_GI_number: 16078639 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Bacillus subtilis # 1 216 31 250 254 164 44.0 1e-40 MAIVCDGMGGHQGGDVASTMAVSHLGHNFANTDLHDKNLARKWLDVQLRSENETILKAAD RFPDLNGMGTTIVLAMFFDQEVLLAHLGDSRAYSYSEGNFRQITEDHSLVNELVKMGQIT KEQAKTHPQKNIITQALGVSSTIDPEYNELEMKTDDVLLLCTDGLTNSLSDPLIQQVLAT KGLNLQERCNKLVNEANRLGGGDNITVCLAVNEEDGASDQ >gi|300497313|gb|AEAT01000038.1| GENE 15 14716 - 16032 1481 438 aa, chain - ## HITS:1 COG:SP1734 KEGG:ns NR:ns ## COG: SP1734 COG0144 # Protein_GI_number: 15901566 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pneumoniae TIGR4 # 5 434 7 432 437 325 42.0 9e-89 MKTNARTVALDTLMKVINQGSYSNISLNHALKAAKLPGEESRLATNLVYGTIQYQLYLEY QLKDLVKARLREPYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLAKGYGRPKSSGYRLVN GILRSLLRRREVLPEKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMASFNSKAKNEI RISALADEKRVVRDLDRAHFAPQESPLASRSYALSRGGIVMTDFFKDGEVTVQDEAASLV AEAFDFKGNEQALDACSAPGGKTIQIAEQLPDGQVTALDIHEKKLRLVKENAARMRVADR VKVKALDARKAREYFSGQEFDKILIDAPCSGLGLLRRKPEIRYTKTAEDISHLAEIQLDI LNEVSGLLKKGGELVYSTCSISVEENEENVRKFLAAHPDFALKPFETAKISAPKGMLKIL PDSYNSDGFFIAKFTTRG >gi|300497313|gb|AEAT01000038.1| GENE 16 16022 - 16969 1026 315 aa, chain - ## HITS:1 COG:SPy1628 KEGG:ns NR:ns ## COG: SPy1628 COG0223 # Protein_GI_number: 15675504 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 311 1 309 311 295 51.0 7e-80 MNSVIFLGTPQFGATVLEGLIKAGYHILAVVTQPDKKVGRKQKVVYSPVKEVALANDLPL YQPVRLSKSAELDELLQLDADFIITAAFGQFLPTKFLKSAKIAAVNVHGSLLPKYRGGAP IQYAVRNGDAETGVTIMEMVKEMDAGDMYAQASLPIRPDETSGEVFEELAPLGRDLLLET LPKIASGEIVKKPQDPSQVVFSPTISKAEERISLKLTAKEAKDLIRALNPDPGAYLVIKG QRLKVWKAEVADDNTSLPAGHLLTNQGRFAISFAGNTVLNLLEVQPNGKKAMAIKDFLNG QGKKFAAGEKIVDED >gi|300497313|gb|AEAT01000038.1| GENE 17 16982 - 19363 2663 793 aa, chain - ## HITS:1 COG:SP1736 KEGG:ns NR:ns ## COG: SP1736 COG1198 # Protein_GI_number: 15901568 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Streptococcus pneumoniae TIGR4 # 2 793 3 798 798 742 50.0 0 MIAEVIVDVAAHQTDRVFEYHIPDDLEVEIGSRVVVPFGRRKVQGFVVAVKKSSDFTGQL KDLLLVVDEMPPLTPELVALSSDLARQIFAYRISILKTMLPGVMRANYRKILLPNSPRAE QMPLFAGDPVDLANLEEPRLIKLVKQLLNKGEARIEYLVENKAKKKLVSVYYPLLSAADY QEIFLETRKTASQQRKLLADLAGDFAAYPKSREELTGLGISSTTLKTAVSKKWLQEKDQE KYRRPTKPVAPSRPLDLNDEQAAALSRVSQDIKGRVSQTFLLEGVTGSGKTEVYLQAISQ ALALGRAALMLVPEISLTPQMVKQVQARFGQQVAVLHSALSEGERYDEWRRIRRGQAQVV VGARSAVFAPLDNLGLIIIDEEHEGSYKQDNNPRYHARDVAIWRSRYHHCPLILGSATPS LASRARAQKGVYQLLRLKKRAKSQPLPRVDLLDLKHVQFAGSQFDISCPLAEAIQKRLEK KEQVILLLNRRGFANFMLCRNCGFVLKCPNCDLSLTMHKDTWTMQCHYCGYQEAVPEICP NCRDRQIRFLGTGTQKVQEELAELFPQAKILRMDVDTTRRKGSYDKILTSFGQGEADILL GTQMIAKGLDFPNVTLVGVINADTGLWLPDYNASERTFELLTQVAGRAGRADKEGQVMIQ TYNPDHYAIHLAQKQDYELFYAKEMRVRHAGDYPPYFYTVLVSVSAKNEQNAAREAFKIK RQLQRELRVPTIILGPAPATISRLKSQYYYQILVKYKREKHLNELLHQIQDQAQEVKKYG LTVEIDSEPERIM >gi|300497313|gb|AEAT01000038.1| GENE 18 19426 - 19647 384 73 aa, chain - ## HITS:1 COG:SP1737 KEGG:ns NR:ns ## COG: SP1737 COG1758 # Protein_GI_number: 15901569 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Streptococcus pneumoniae TIGR4 # 6 72 4 69 103 58 55.0 2e-09 MRITYPSIDKLLDEVDSRYSLSVLAAKRAGELEAGKPGALDNYHNLKPVGQALEEIAAGK VTIDADPHGEADE >gi|300497313|gb|AEAT01000038.1| GENE 19 19649 - 20263 684 204 aa, chain - ## HITS:1 COG:lin1941 KEGG:ns NR:ns ## COG: lin1941 COG0194 # Protein_GI_number: 16801007 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Listeria innocua # 1 202 1 202 205 234 59.0 1e-61 MADKGLLLVLSGPSGVGKGTVKSAIVEHKVFPFEYSVSMTTRKPREGEVNGKDYYFVTRE EFKQAIADNQLLEYNEYVGNLYGTPLGPVKEMLAAGKDVLLEIDVNGARTVRQQMPDGVF IFLTPPDLHTLRDRLEHRGTESEDVIRGRITQARKEILVMQDYDYAVVNDTVANAVNHIK AIVDAEHVSVKRVIGDYRKMVKED Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:14:11 2011 Seq name: gi|300497282|gb|AEAT01000039.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00099, whole genome shotgun sequence Length of sequence - 38054 bp Number of predicted genes - 29, with homology - 29 Number of transcription units - 9, operones - 7 average op.length - 3.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 35/0.000 - CDS 37 - 1833 223 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 2 1 Op 2 . - CDS 1820 - 3580 186 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 - Term 3640 - 3676 7.1 3 2 Op 1 . - CDS 3691 - 3915 347 ## COG3763 Uncharacterized protein conserved in bacteria 4 2 Op 2 . - CDS 4028 - 4264 400 ## Ldb1355 hypothetical protein - Prom 4317 - 4376 7.5 + Prom 4322 - 4381 8.0 5 3 Op 1 . + CDS 4419 - 5039 858 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) + Term 5083 - 5130 10.0 + Prom 5062 - 5121 5.2 6 3 Op 2 . + CDS 5239 - 6087 1530 ## COG4975 Putative glucose uptake permease + Term 6129 - 6178 14.1 - Term 6125 - 6158 5.4 7 4 Tu 1 . - CDS 6188 - 7048 1300 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 7078 - 7137 8.4 8 5 Op 1 . - CDS 7244 - 7777 658 ## LDBND_1302 hypothetical protein 9 5 Op 2 . - CDS 7834 - 10068 2268 ## COG1201 Lhr-like helicases 10 5 Op 3 . - CDS 10091 - 11413 1864 ## Ldb1361 hypothetical protein 11 5 Op 4 . - CDS 11413 - 13311 2000 ## Ldb1362 hypothetical protein - Prom 13334 - 13393 7.7 - Term 13372 - 13412 7.2 12 6 Tu 1 . - CDS 13443 - 15293 2980 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Prom 15331 - 15390 5.1 - Term 15500 - 15545 11.1 13 7 Op 1 . - CDS 15561 - 15938 568 ## PROTEIN SUPPORTED gi|116629446|ref|YP_814618.1| 50S ribosomal protein L19 - Prom 15967 - 16026 2.1 14 7 Op 2 . - CDS 16030 - 19587 4341 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family 15 7 Op 3 30/0.000 - CDS 19607 - 20305 934 ## COG0336 tRNA-(guanine-N1)-methyltransferase 16 7 Op 4 12/0.000 - CDS 20338 - 20841 167 ## PROTEIN SUPPORTED gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 - Term 20860 - 20893 2.2 17 7 Op 5 23/0.000 - CDS 20903 - 21175 455 ## PROTEIN SUPPORTED gi|104774248|ref|YP_619228.1| 30S ribosomal protein S16 - Prom 21199 - 21258 5.5 - Term 21211 - 21256 -0.9 18 7 Op 6 8/0.000 - CDS 21270 - 22700 2209 ## COG0541 Signal recognition particle GTPase 19 7 Op 7 . - CDS 22702 - 23043 531 ## COG2739 Uncharacterized protein conserved in bacteria - Term 23063 - 23092 0.5 20 8 Op 1 . - CDS 23096 - 24517 2148 ## COG4690 Dipeptidase 21 8 Op 2 10/0.000 - CDS 24565 - 25863 1935 ## COG0552 Signal recognition particle GTPase 22 8 Op 3 6/0.000 - CDS 25866 - 29426 4545 ## COG1196 Chromosome segregation ATPases 23 8 Op 4 . - CDS 29426 - 30121 686 ## COG0571 dsRNA-specific ribonuclease - Prom 30144 - 30203 4.3 - Term 30192 - 30240 9.9 24 9 Op 1 3/0.000 - CDS 30246 - 32024 2332 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 32051 - 32110 3.7 - Term 32106 - 32137 2.1 25 9 Op 2 5/0.000 - CDS 32162 - 33934 2591 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 34029 - 34088 5.8 26 9 Op 3 49/0.000 - CDS 34093 - 35004 1049 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 27 9 Op 4 6/0.000 - CDS 35015 - 35974 1434 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 28 9 Op 5 44/0.000 - CDS 35978 - 36934 753 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 29 9 Op 6 . - CDS 36944 - 37945 1116 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component - Prom 37992 - 38051 8.8 Predicted protein(s) >gi|300497282|gb|AEAT01000039.1| GENE 1 37 - 1833 223 598 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 360 583 132 355 398 90 31 1e-17 MTMNNEDFQSVWQQPISTKEQWQILKRLWTFVWLYKGELLTAVVGMVAVSVINMLLPTWL RYYMDHYLKTGKVDFSTFYYVALIYGIGVVFKAVCQFTYEYLYALAGEKALEKVRRVLYA KIHTLGMRYFDQTPAGSILSRVTNDTMTLGNFMQVFSAFLLGIVSMVTALIAMYMADPVA GGIVTAFIPLIVGAIWLYNRVSSKIYHEYRARNSLINTKLEESIAGISVIQQFRQEKRID DDFEKINRQQMQTRFKLIRTNGLLLSPFTTLLYSLALTCVLVWFGYPLRATFVPAGMIYA FANYVQNFFNPLSDMMNSLTFFTDGIVAGKRIFKILDQEEYEPKQKELANAKITEGKIEF KHVSFSYDGKHDVLRDVSFTLNPGETLGIVGHTGSGKSSIINVMMRFYEFHSGQILLDGI DIRDFSKAELRQKMGLVLQEPFMFYGDVASNIRLYNDKITDEQIEEAAKTVQADRFIEKL PGKYHAKVIEGGSEFSSGERQLISFARTLVTNPKILILDEATANVDTETESLIQAGLKKL RQGRTTLAIAHRLSTIADADQIIVLDKGRIVEHGKHEDLLAQKGYYYDLYTLQQNREN >gi|300497282|gb|AEAT01000039.1| GENE 2 1820 - 3580 186 586 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 355 560 295 507 563 76 30 3e-13 MDTFSKLGWFFKAHRKRYALGITALVLTSAANLVPPRILGMMADQLDTGRISWQQFFSYV LAILLAALALYVCRYFWRKQIYGGAAILEKELRGRLFWHFMQMDRTFFQRYRTGDLMARA TNDVQAVQNVAGDGILTLIDAIFTGGTTLLAMMILVDWRLTLAAMLPLPLLAFCARYLGD RLHDAYMDSQAAFSRLNNKTQESLSGIKVLKTFGQGKEDAAAFNKMTYETVDINKKVFRI DSLYDPMITMIIGITYIITIIYGGRLVLSKAISLGQLISFVSYIGAMVWPMFAIGYLFNV LERGSASYDRIMSLLNEKSLIVDSDSMDKEQKLTGDLRYHVTSFAYPDEPDKAALGPVDF DLKNGQTIGLVGRVGSGKTTIIQLLMREFDNYKGRITFAGHDIRQIPLDVYLKEISYVPQ NNFLFSMSVRDNIAFAKPDASQEEVEVAAKKSALHDDILAFPNGYETMIGENGVSLSGGQ KQRMSIARALLHDSEILILDDALSAVDAKTEKAILTKLRQEREKKITVIAAHRLSSVMDA DLILVMQDGQVAERGTHEELLAKGGWYARMWQRQELAQKVGEDDDE >gi|300497282|gb|AEAT01000039.1| GENE 3 3691 - 3915 347 74 aa, chain - ## HITS:1 COG:SA1178 KEGG:ns NR:ns ## COG: SA1178 COG3763 # Protein_GI_number: 15926924 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 74 1 74 80 58 52.0 3e-09 MNLGLAIFLIILAALLGAVAGFYGARTYMKNYFKKNPPITREMVETMMSQMGQKPSAKKV NQVMNMIKHQAAKN >gi|300497282|gb|AEAT01000039.1| GENE 4 4028 - 4264 400 78 aa, chain - ## HITS:1 COG:no KEGG:Ldb1355 NR:ns ## KEGG: Ldb1355 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 78 1 78 78 95 98.0 6e-19 MTEADQVRKRINELYKKKQESGLTEAEEAERKELHKQFIANFRAGFKQQLDSLVIVDDQG KDVTPEKAKQIQKKKVLR >gi|300497282|gb|AEAT01000039.1| GENE 5 4419 - 5039 858 206 aa, chain + ## HITS:1 COG:lin1340 KEGG:ns NR:ns ## COG: lin1340 COG1974 # Protein_GI_number: 16800408 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Listeria innocua # 7 202 6 201 204 236 59.0 2e-62 MATHDSKQLEILQYIYDTVENRGFPPTVREICAAVGLSSTSTVHGHLTRLERKGYLIKDA TKPRALEITHAGLDALGIKPKDIPVIGVVTAGQPILAVQDVEDYFPLPPNLASDAGELFM LRVHGTSMINAGILNGDYVIVRKQTTAQNGEIVVAMTDDGEATVKRFFKEDFHYRLQPEN DAMDPIILNHVQILGKVVGLYRTNID >gi|300497282|gb|AEAT01000039.1| GENE 6 5239 - 6087 1530 282 aa, chain + ## HITS:1 COG:lin0212 KEGG:ns NR:ns ## COG: lin0212 COG4975 # Protein_GI_number: 16799289 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Listeria innocua # 1 265 1 262 285 169 36.0 7e-42 MNIIIALLPAIGWGVMPWIVNKVPNSKPANQIFGVGMGATIVGIIVTLIQHPAISMPVFF LSLLSGALWTIGQIGQFISFTRIGVSKTMPISTGLQLVGNTIIGALIFGEWKTSNDFIFG IIALVIIMVGVILTAYTEKGDGFTQKTTNKDILFLVLTTIGYLAYSAFPKTITADAESMF LPQTLGILLGSVIYLAFSGNKAAFKEKTSYLDLFAGISFGIAAYAYIISAQLNGVTNAFI YGQLSVIISTIGGMTLLGERKQGKELVATLAGLCLIVVGAIL >gi|300497282|gb|AEAT01000039.1| GENE 7 6188 - 7048 1300 286 aa, chain - ## HITS:1 COG:BS_glnH KEGG:ns NR:ns ## COG: BS_glnH COG0834 # Protein_GI_number: 16079797 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 27 266 18 266 273 213 46.0 3e-55 MKRQPQTIKRIIQALACGLLLLLATSLTACSSKQESSYARAKQSKQITWGVRPDTKLFGL TNIKTGKIEGFEIDLATAITKQILGPKSKAVFRPITEKTRITLLHNGSLDAVISTMTITK ERMKVIDFSDVYFNANESMIVKKSSKIRSIADLNKKGVVVIAIKGTDVANQVAKLASKAS VKQFDDYGSAFNALKAGQGDVMIDDNGILAGLIADTPEFTLTKASLAEEPYGIGVEKGQT EMRQAINQALKQLRANGKYDQLVKKWFGKVSGFDVKHAESQKVKIQ >gi|300497282|gb|AEAT01000039.1| GENE 8 7244 - 7777 658 177 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1302 NR:ns ## KEGG: LDBND_1302 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 177 1 177 177 335 98.0 4e-91 MSVSKRPISSFQELETAADDSDEIHFKLNGQQWLLVDDGNPLTPASKTLINCDLPEEQQF FANTEEFLTCQIGGQSLADCWPKMSEVAVWSVQFDSLEEFVQAIKDGCDIKFSLAGRQYS LGQSSERKVYRQLTWRLEKGGQMKVEKFADLKQLLAFEIAGQSLGKQWSAMKNVDYG >gi|300497282|gb|AEAT01000039.1| GENE 9 7834 - 10068 2268 744 aa, chain - ## HITS:1 COG:alr3331 KEGG:ns NR:ns ## COG: alr3331 COG1201 # Protein_GI_number: 17230823 # Func_class: R General function prediction only # Function: Lhr-like helicases # Organism: Nostoc sp. PCC 7120 # 2 737 3 720 722 693 46.0 0 MDTFSRYAPFIQDYIYSRGWETLRPLQAAAAQVIFATDDNLLLSASTASGKTEAAFFPIL TDLAENPADSIACLYIAPLKALINDQYDRLKDICEGSDVPVWRYHGDVSAAQKRKMFKMP QGVLQITPESLESLMINKHADIPRLFGDLRYVVIDELHSFLRSGRGGQTFCLLERLNRLA GVKPRRIGLSATIGDPKAAGQFLGAGSGRQTRIPKVKSQPQRWRLSMEHFYKSGDQAGDH SALPAQAVLDQASDQAPELADPGLAYIFDHTRGKKCLVFTNSREECEAVCQVLRQYCEYK HEPDRFMIHHGNLSAALRQGAEAIMKDEDANITTCATATLELGIDVGQLERAFQIEAPFT VSGFLQRMGRTGRRGNPAEMWFVMREEQAESRAMLPVLLPWSLLQGIALVELYLQERWVE PPRDHQLPYSLLYHQTMSTLMAGGEMSPAELASRVLTLSYFRWVSQDDYRVLLRHLIKTD QIQLTENGGLIVGLAGERVTNNFKFYAVFQENEEYSVHAESEELGTIVKPPPLGEKIAIA GHVWVVEEIDRRRRQVYVHQVKGRIPAYFGDVAGDIHPKVLQQMRKILAEERQYPYLMKN AAARLSETRAMAEAAGLPDKQLINLGAKTYCLFPWTGSYAFLALERFLRLKCASRLGLKN FDSVRPYYIQFSMDVSEGDFYQILAEEAAKDFDPLDLLYPKEVPVFDKYDEYLPDDLVRK EFAYSVLDLTEMRRAIGEITRQMA >gi|300497282|gb|AEAT01000039.1| GENE 10 10091 - 11413 1864 440 aa, chain - ## HITS:1 COG:no KEGG:Ldb1361 NR:ns ## KEGG: Ldb1361 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 440 1 440 440 848 98.0 0 MEQKKRIPKRIAQTVISSLKGGVVPRIGLPYITVGRKAEIAALLHDVDLVKEGGASFRFV VGRYGSGKSFLLQTIRNYVMDRNFIVLDADLSPERRLQGSKGQGLATYRELIQNLATKTR PEGGALTLVLDCWINNVQTAVASEITFDDPGFQTAVDQKIVSQISSLSEMVHGYDFAQLL ERYYHAYLAGDEDTKGKVVKWFRGEYRLKTEAKQDLGVNIIISDEDWYEYLKLFAVFFRQ AGYSGMFIMVDELVNLYKIPNAISRQYNYEKLLSMYNDAMQGKAKYLGIIMGATPQAVED RRRGVYSYEALRSRLAEGKFAKEGQRDLYAPVIRLEPLTAEEMLVLTEKLADMHASLYGY ERTISEKDLADFIKIEYARVGTSSMITPREIIRDFIELLDIVLQNPGQTVQSLLTDGDFA YTKSDAVSDEKTSDFAEFTI >gi|300497282|gb|AEAT01000039.1| GENE 11 11413 - 13311 2000 632 aa, chain - ## HITS:1 COG:no KEGG:Ldb1362 NR:ns ## KEGG: Ldb1362 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 632 1 632 632 1181 98.0 0 MHLAEVADYIQSKYGIEASYVDLAGQTLAAVTVPGANESFALLLKKDGRETVELKAGSLA KFLAAQPAFGPAVFMQDPAWIRVDLDNPALNDRFFYKTLDSAYQSSRPLEAAKNTAEDRQ EHEIYLLDDEGEDFQEEVIPKRPAFFKDSDFDCLLAEKGQPVIPEGIKQMQESYDYLAVP RRESNFYRQGMLMANYEDDFAQMVPINKQRPVYHDLTVDQLRSYFSWRTKFRQGKYKPAP AAYVYLLASELVCQIGVKDKADGLRQLRLLFAKCVEQKDISTSWQEKHILQNYLVYYGFA LEEIRPDFADELMRGEVYHNLLSGEASGQELYQAICCLSSYLPKNNPLLKKEPEKFYELL AQVWQEVRLNPYQLLKLLVGEKTTLPVEMFADTVFFSLDPVKDAELILGPGLVYRCQGGQ WSNEVYWPSGRQRQLLANFMHEFDRLSRQAFKQGRALKEKDLPPAFKQAIVQGIADYQEI LIERARPKVKINLASLDQIRSDAAETKESLLTEEERQLEAEEAERITSESNKQVSESSAA EEKMTKDIDETAASGLGLDENEEQLLLALFSGQPYQDFLRQRHLLLSVVVDQINEKIFDE IGDAVIDCDGQKADIVEDYRSDLADLLGIEEK >gi|300497282|gb|AEAT01000039.1| GENE 12 13443 - 15293 2980 616 aa, chain - ## HITS:1 COG:SPy0872 KEGG:ns NR:ns ## COG: SPy0872 COG0737 # Protein_GI_number: 15674897 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Streptococcus pyogenes M1 GAS # 54 595 27 559 670 440 47.0 1e-123 MARSIKKELAALLLAAAVLAPGQASASKLEVTSKADTASKPAQSKDWKNPKKYSKDIPVQ FLSINDLHGNLSTTGTATLGQKSYSNAGTVARLAAYLNQAQKDFKKKNKQGTTFRVESGD MVGASPANSSLLQDEPTMHALKAMKFTIGTLGNHEFDEGLGEFNRILLGKKPTKKYNSAE MAYPHQKSGIKLIVANVVRKSTGKVPYGWKSYTIKTVKAGKKKAKVGFIGVLTTEMPTLT TKKNYSAFKYLDEAKTIAKYEKVLRKKGVKAIVVLAHKGVETAADSKGKLTTSGDSVKIL KKLNKIDPKNTVDLMIAGHSHQYANAKVGKTRLVQALKYGQAYTDSIGYISPKTKDFVKG SLVSHVYPVLSAADDPKTKDNKTVAKIVADADKRVSAITKQKIATAQKAETITGRENNNT SNENAVGDLVVDAQLSEANRQGFKADFAMTNGGGVRSGLAVGSDKSITYGAAMAVQPFGN SLQVLTMTGKQILAALNQQYQLDGHYYLLVSGLHYVYTKDAAGKVKIVKVYVGEGEKTEL SLTKTYRVVANEFIAGGGDHFTQFTAGKKVGILTGTDTETFISYLKQQTASGKQIASPAL NRKVEISAAQAAALEK >gi|300497282|gb|AEAT01000039.1| GENE 13 15561 - 15938 568 125 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116629446|ref|YP_814618.1| 50S ribosomal protein L19 [Lactobacillus gasseri ATCC 33323] # 1 125 2 126 127 223 88 1e-57 MMNAVEGETIMDPLIQELTKEQLRDDMPEFRAGDTVRVHVRVVEGTHERIQIFEGVVIKK KGTGIGATYTVRKIASGVGVERTFPVNTPRVAKVEVTRHGRVRRAKLYYLRTRSGKAARI AERRR >gi|300497282|gb|AEAT01000039.1| GENE 14 16030 - 19587 4341 1185 aa, chain - ## HITS:1 COG:FN1160 KEGG:ns NR:ns ## COG: FN1160 COG0553 # Protein_GI_number: 19704495 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Fusobacterium nucleatum # 568 1184 480 1086 1089 489 44.0 1e-137 MTLQWRKLFSNRILDRGRDYWKRDWVYAPSYSELPAGIHCRVGKPGQSYDVTIDFSDDWS EIKWMDCDCPYAAEGYNCKHEAACLYATELFIEGMQAIQEPLTSELSASDRKKRQEEIIE KVYGLGRKYVNYIFDPGKILASVDFDPVLWERIWDNPALAHLVAVNLDDSQANDKQPLLT ATGFSHFANRGNGNKVNVKVGLKQVSELKCNIAECKQDEITGPCRHEIALLQKLVLMIMR ENPGEVTDYQADRALARAEMLEEFDQDALEDVKLLAQLEKEPGGSFLVKFKVGQKRLYVV KNIQNFVDDVLSWRPISLGKEEVLVSPDSFDPASQRLFSFLATIAADGADIYGESKRSIE IASGRIDGFFAAVEGSEVENLDNKQVVPAKRGELEKAELEIDVYGGRGISITGICPPVLR GIRASYQLTDEAFVAGKLGNMLYALFGNKENIDVSFDINQLSQFKATVLPLLKKYSNLTI SPAAQQFLEEAGGLEKSQLRLDVEGDEVVGQARVFYQGKAVRLGASGERAIKRDWYKEEK LADLLEKFFDLEDGDCRLDKGDDEAVYQLLEGMPKLLAAFGEVEVTPAFKKLKLKDGLNL AFGLSLSDGLLRLDLKSELTPKELAEVFSQYKDRKKYIRLKNGSFLNPASQDLEKLALLA KNLDLTAKDFGKEQLEMPAYRALYVDQLLKEQEMGEIERDDHFQQLLADFDQKEAPLKLP TGLEKILRPYQKTGTAWMNRLAQHGFGGILADEMGLGKTLQVISLLASQKDQPSLIVAPA SLVLNWEAEFKKFAPEMKTLVLSGSKKERSGQLADLTDIDVVITSYDLLKRDITNYEPHT FAYEVIDEAQMIKNPRTAAAKAVSVVKAKHRFALTGTPIENRLSELWSIFNFVMPGFLKS YREFKKDFESPIVKEDDQDCLNRLSQMVGPFILRRLKKDVLKDLPDKLEEVRYVGMGKEQ RKLYDAEIARLKNKVMAEDDEGIKREQIEILAALTRIREICCDPGLLYEDYKGESEKRLA CVDLIKSAIDGGHKVLLFSQFTSMLDLLEESLKAEEIVFLRIDGQTPKAKRLTLVNVFNH KDSPAKVFLISLKAGGTGLNLTGADTVIHYDPWWNVAAQNQATDRAHRIGQEKKVTVYKL IAKDTVEEAILDLQEAKSQLAQGILTAESVSSTSLQKEDLLKILD >gi|300497282|gb|AEAT01000039.1| GENE 15 19607 - 20305 934 232 aa, chain - ## HITS:1 COG:SA1083 KEGG:ns NR:ns ## COG: SA1083 COG0336 # Protein_GI_number: 15926823 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Staphylococcus aureus N315 # 5 224 17 239 245 237 52.0 2e-62 MFTPLQVSLLGRGQEDGKWKLNLVNFRDFSDRPHKSVDDTPYGGGAGMVLQVKPIKDALD SLENKGKVIITAPQGKTFNEQMAQEWSKEENLTFICGHFEGFDQRVYDLADEMVSIGDYV LTGGELPTMSMIDATVRLLPGILGNALSPVEESFSDGLLEYPQYTRPADFDGQKVPEVLL SGNHGKIDEWRHYQALKATKLHRPDLLEKRDLTPEEVRMLRQIREDEQAEED >gi|300497282|gb|AEAT01000039.1| GENE 16 20338 - 20841 167 167 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 [alpha proteobacterium BAL199] # 6 153 7 152 179 68 29 4e-11 MNYYNVGKIIATHGLKGEVKVALTTDFPEDRFRTGSRLYLGDDSREVTVAAGRPFKQFWL VTFAEITDIDQAKKLKGTEILISEEDQGELPDGVYYYRDLLGCKVLDDESGEEIGELTDI EAPGANDIWEVTDEDGKSFWLPYIPQVVKSVDIDKKEVRVELMEGLR >gi|300497282|gb|AEAT01000039.1| GENE 17 20903 - 21175 455 90 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104774248|ref|YP_619228.1| 30S ribosomal protein S16 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 90 1 90 90 179 97 2e-44 MSVKIRMRRMGAKRKPFYRIVVADSRAPRDGRFIEEVGYYNPVSQPKELKLDEDKIFEWL KKGAQPSDTVRSLLSGAGLMAKLHDEKYNK >gi|300497282|gb|AEAT01000039.1| GENE 18 21270 - 22700 2209 476 aa, chain - ## HITS:1 COG:SP1287 KEGG:ns NR:ns ## COG: SP1287 COG0541 # Protein_GI_number: 15901147 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 457 1 457 523 540 63.0 1e-153 MAFENLSERLQKALRNLTGKGKISEEDINAASREIRLALLEADVNFKVVKDFIKTIKKRA LGQEVQESLTPGQQVIKIVNEELTKMMGEEAVGLTKSPHIPTVIMMVGLQGTGKTTTVGK LAYRLMKEEKARPFLIAGDIYRPAAIDQLKQIGADLKVPVYSDPEEKSVAKIVEDGLAEA AVHRNDYVIIDTAGRLEIDEPLMKELEEVKAVSQPDNILLVVDAMTGQAAADVAQTFNER LDVTGVILTKLDGDTRGGAALSIRAITGKPILFTGQGEKLTDLEVFHPDRMASRILGMGD MLTLIEKAQQDYDAKQAEKVAQKMRENTFDFNDFIDQLEQVQKMGPLDEIMKMIPGMANN PQLKNFSIDEKQIAHTKAIVYSMTPAEREDESLLNPSRRRRIAAGSGVPIVEVNRMIKEF KTAKDMMSKVTKGNFKDLEKLPGMNSPMAKMAMRRMGKSFKKKKAKKMKKVKRFHS >gi|300497282|gb|AEAT01000039.1| GENE 19 22702 - 23043 531 113 aa, chain - ## HITS:1 COG:SPy1201 KEGG:ns NR:ns ## COG: SPy1201 COG2739 # Protein_GI_number: 15675166 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 3 77 5 79 113 66 50.0 1e-11 MDELSKNEALGDLYAMYSALLTQGQQDYFEDYYYNDLSLGEIADNRHVSRQAVYDNLRRS AKSLEKYEDKLQLLASYGQLEEGISQALASLAAGDQETAKLQLEDLLQIIRGE >gi|300497282|gb|AEAT01000039.1| GENE 20 23096 - 24517 2148 473 aa, chain - ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 2 470 7 473 474 378 41.0 1e-104 MKDDACTSILVGKKAAMDGNNLIARNDDTFSPLNQQKFVVNPAVHGEKGRKIKSWLNKFK MDLPEDAYRYPAVPNVDYKKYGYYEESGINEKNVAMSATESTYGNERTLAFDPLVVDGLD EDCMVNVVLPYIDSARGGVKRLGALIAKYGSAAGNSVLFSDKDEIWYMEIVTGHHWVAQR IPDDAYAIAANRVSIQEVDFTSDDFMWSAGIQDFVAKNKLNPDLEGWNFRHIFGTFTEQD RHYNTSRVWYGQKILNPSIDQDPEDPDLPFIRRAEKKISKEDIEYILGSHYQATVYDPFA VKGSDEEHHRYRPIGLNRTQNAHILEVRNDQAAGVAGIMWLCIGGPTFTPFVPFFTNMND TDPSYNDTSLEYRQSDAWWFYKSLATLVESHYSHFVQMDATYLTELNRYFRARVAEVTDQ AKGLTGEELTTFLTKANQETVAHCRQESEKLWGQLFKEAIKLSKLTFNMDKNL >gi|300497282|gb|AEAT01000039.1| GENE 21 24565 - 25863 1935 432 aa, chain - ## HITS:1 COG:SP1244 KEGG:ns NR:ns ## COG: SP1244 COG0552 # Protein_GI_number: 15901105 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 432 1 429 429 329 52.0 6e-90 MGLFDRIKKSLFGQKDEEKPEEVKADQEEAAEENAETKNEAVAETTETSEEAVAEKAEEQ EETADEESTEAAEEESAEVTEETKESTEATEDVEETETTETAEEKTEAEEETTEPAEEST EEKTTELYEKGLEKSNKGFGARLNAFLAKFRTVDEDFFDDLEELLIESDVGYETSEELTD QLREEAKLQKAKRRDDLKRVIVQKLVEVYDENANSENEKLAYDPNAKPNVYLFVGVNGAG KTTTVGKLAKRFHDQGKKVLLVAADTFRAGAVEQLVEWGKRTGVPVVTGPDKADPAAVVY DGLERAIAEEADYLLVDTAGRLQNKVNLMNELEKIQRTIKKRLPDQPAETLLVLDGSTGQ NALLQAKDFDKTTKLSGLVLTKLDGSSKGGVVLSIRHEMKLPVKLVGLGEKAEDLADFDA ANYAVGLFHDLL >gi|300497282|gb|AEAT01000039.1| GENE 22 25866 - 29426 4545 1186 aa, chain - ## HITS:1 COG:lin1918 KEGG:ns NR:ns ## COG: lin1918 COG1196 # Protein_GI_number: 16800984 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Listeria innocua # 1 1181 1 1180 1186 638 36.0 0 MPLTSLILEGFKSFADKTVIDFTKGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGRN MKDVIFAGSQFRKPLNRAEVTMVFDNRDRELDFSADQVSITRRILKSGDNEYLINQQPVR LRDVRALFLDSGISQNSLAIISQGRVDQILNSQARERRGIFEEAAGVLHFKQQKQQAQGQ LETTNDNLIRINDLVNELEKRLEPLHEQSSLAQEYQFQKAALDEDLKTLLAFEIADLDQE EREVSQKLAKSQELLSRLDAEVKQSQAKLAAKRQEFQLESQKRDQVQAEVLKLTNRLSEI NTSLQVSQQSRQFDQATRLEYQRQLADLKENLAATDAEISKLADQEAEYAGQLDQLKCKR QKLVDQLKEDPASLKLKVEDLRSQYIQTLQDQTSVNNQLVYLEGEIKRAKESKDQRYEDA SSQLAKSQEELEGLRLKGQKLRAEIDQLQAELKEASDQLGKLAAEQQVAQKQLQADLTNL QRLTARRDALVNIQKRHDGYYAGVKQVLNQPDRFPGIIGAVGELLTFPADLEAAMTTALG GSVQSLVAKDRMAAKDAIQQLKVRRLGRATFLPLDALRYRAIPASTRQALERFAGFQGLA SELVEAKGDTDISEAIQYLLGSIIIVDNMHTALAVSRQIGHYRVVTLDGDVISPGGAMTG GARNQRNNSPLQTTAEINKTTAMLEELEGQFHIKEKKLAALDKQVKDKQETREQISRDLQ SLQQDLSAAVLTFQSQEKEVKRLESAVQLYQAQQAEQAAYLADLTDKVKAQKTKKEELAA LADQQKRDLASLQETIQNYTDLNQGVQEKLAELDPQLAVLANKQENLQARKAELGRQKAA SQKQIGQLEEKLAALDNSSQLSASKKEELGMEKDRLLAEQKDKQADLDAASQLLGQLNGQ INQLEAVATRNYDLRKDAASEQEEFSVKLATVKGQLKQHLDSLREDYSLTYEAALSQAKL ENTEENQQNLRRSVKLHRMSLEDIGPVNLGAIDEYKEVKDRYDFLNGQQNDLLEARSNLQ QSMDELDQEVKGRFGQTFQQISASFSRLFPVVFGGGNARLTLTDPDDLLESGVEIIAQPP GKKLQRLSLLSGGERSLTAITLLFAMLEVNPVPFCVLDEVEAALDDANVVRFARFLRQYD SQTQFIVITHRRGTMEQADQLYGVVMQESGVSQILSVSLKDLKDEV >gi|300497282|gb|AEAT01000039.1| GENE 23 29426 - 30121 686 231 aa, chain - ## HITS:1 COG:SP1248 KEGG:ns NR:ns ## COG: SP1248 COG0571 # Protein_GI_number: 15901109 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Streptococcus pneumoniae TIGR4 # 9 225 7 225 232 194 49.0 1e-49 MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTV SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALL EDVFEAFNGALFLDQGIEAVEKFSSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIE YRVLNESQQPPHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLNGGK >gi|300497282|gb|AEAT01000039.1| GENE 24 30246 - 32024 2332 592 aa, chain - ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 1 589 1 591 600 348 36.0 2e-95 MKRLTKITLCLLVALSLAACGQKTEKSKQNGNSGAEDAMQFPVATSFAKTKKGGSIKVAL ETDTPFTGIFSDELADSTTDATLAQFGSESLFDTDNSYNITDSGAASFSLDRQAKQITIN IKKGVKWSDGKQVVAKDVEYAYEVIANKATKSSHYTSSLQDVVGLKEYHDGRDKTISGIE MPDGENGRKVVIHFKEMHPGMLKSGNGYFWESALPYHYLKNVPFSKLRTCIEIRKKPVYF GPYKVQSIEAGQKVVWTRNEYYWRGTPSLSKITISIISPKSVSTAIKKRTYDIIEVVNSQ WQQIRTTKNYRFVATIPLSYNYLGFKLGKWDEKTNSVKMNKNSKMANKSLRQAIGYAMNV TQIQRKYTSGLTFRIKSLIPSQFGDYYDDKSKGYPYNPAKAKKLLDKAGYKLRSGEKYRR DPQGHKLVIHLAAMTGDASQSKIINNYIKKWKEIGLNVKLTTGHLLEFNTFYNLLFQDDS QVDMFIAGWTLNNEPSQNGIYGAGTQYNLERFATKTNTQLLEAMDSDAAFNINYRIKVFK KWQRYMQEQAFVIPLTSSYKITAINKQLVNLSYEPAEMNNSHPLWYKIGYKK >gi|300497282|gb|AEAT01000039.1| GENE 25 32162 - 33934 2591 590 aa, chain - ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 12 587 13 591 600 392 41.0 1e-109 MKRRMLGTFGVLLAGAALLAGCGKSSSSSSSSNSGAKDAKKFPEATATATAKKGGSITVA EEVDTPVKGVFLNELSDSAPDSDFMTYGNESLFATDDQYKINNKGAATFKMDRKAKTVTI EVKKGVKWSDGKQVTAKDVEYSYEIIANKASQSSRYTSSLADIVGLAEYHDGKSKKISGI EMPDGENGRKVVLHFKEMKPGMTQSGNGFFWESAAPYHYLKDVPFSKLQSSDKVRKNPLF FGPYKLSKLVRGQSATWVRNPYYYRGKAKLDKITISVISPNSASQSIKSKKFDMIDVVNS QWKEVKGTKGYNFVAQIPLSYSYMGFKVGKWDKKTGSVKMNKNSKMSNRYLRQAMGYAMN VDEVTQHYTQGLSFRVKTLVPESFGDFHDKSVKGFPLNIKKANALLDKAGYKKKKGETYR RDPNGKKLTIHLAAMSGSPNQEAIVQNYIQQWKKIGLHVTLTTGRLIELNSFYDKVQNDD PSVDVFMAAWSLASEPTQDDLYGPKAPYNFTRFATSENTKLLKEMGSDKAFNHSYRVQKF HEWQQYMQKEAFVIPLTNAYKITAVNSKLVNYSTKPSKTATLWYETGFKK >gi|300497282|gb|AEAT01000039.1| GENE 26 34093 - 35004 1049 303 aa, chain - ## HITS:1 COG:BH3637 KEGG:ns NR:ns ## COG: BH3637 COG1173 # Protein_GI_number: 15616199 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 10 301 10 300 302 256 46.0 4e-68 MALFTVGKKKQDDRAQIPPSALKITFREIFKSKAATIAFCTIVVILLLTFGGSLFLDSSK VTEMHILESYAGWGQNGHLLGTDNGGRDILNLLIMGGRNSIMIGLLVTLFCELVGLIVGL VAGYYGGTTDSIIMRIVDFVQILPQMPILIVLVTVLPNYNAMTLVLLISMFGWTVEARYY RSFILSQRERDYVLASKTSGSSNTKIMFREILPNIASMIIIDVVLSVSGNIGIETALSFI GYGLPTKIPSLGTLIGFANDPVNIIDRPWLWLPATVLLLVICLSINYVGQALQKAGDARQ REN >gi|300497282|gb|AEAT01000039.1| GENE 27 35015 - 35974 1434 319 aa, chain - ## HITS:1 COG:BH3638 KEGG:ns NR:ns ## COG: BH3638 COG0601 # Protein_GI_number: 15616200 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 1 319 1 322 322 342 54.0 6e-94 MWKTVLRRVLIMIPQLILLSIIVFMLAKMMPGDPFTGLINPNSSPKEIARLKQAYGLNDP VPVQYVRWIKNLLHGDLGQSYIQHVPVASLIADRAQNTFWLSLLSTILLYGIAIPMGISA GKHEGEWQDRAISVFNYVTYAIPGFVFYLLGLWLFGFTLGWFPISGTVAANASGFWGIFF SRLQHMILPAILYAIIATTGTVQYLRTGIIDNKVEDYVKTARSKGVPEKVVFNKHILRNS FLPIAAFMGNTITGLLGGSLIIETVFSFPGMGKLFLDSISQRDYTTLTALIMIFGTLTLL GNLLSDIIMSLVDPRIRVK >gi|300497282|gb|AEAT01000039.1| GENE 28 35978 - 36934 753 318 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 2 269 8 275 329 294 52 5e-79 MAEEIIQVKDLKVHYPIRSGFWNRITDYVRAVDGVSFSIKEGETYGLIGESGSGKSTTGK AIVGVEKVTSGQILYKGEDITKESVRRKMNYNKDVQMIFQDSMSSLNPRKRIEDIIAEPI RNFENLTTDQERDRVQELLSIVGMPSDAIYKFPHEFSGGQRQRIGIARAVATNPKLIVAD EPTSALDLSVQAQVLNFMKHIQQQYNIAFLFISHDLGVVKHMSENLAIMHRGRLVEVGSQ EEIYKNPAHIYTKRLLSAIPKVDVEHRAEHAARRREIEREFLQDQANWYDADGRVYPLTE VGPNHQVALPKEQIKGGE >gi|300497282|gb|AEAT01000039.1| GENE 29 36944 - 37945 1116 333 aa, chain - ## HITS:1 COG:BH3640 KEGG:ns NR:ns ## COG: BH3640 COG0444 # Protein_GI_number: 15616202 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Bacillus halodurans # 5 329 3 327 340 419 59.0 1e-117 MDNQQNVLLDVEKLHTGYRLQGEFYDAADGIGFTLKRNEVLAIVGESGCGKSTIASSIVG LYDRKNTRVEGEIRYKNLNLVNLSEDLFNQVRGNNIGMIFQDPMASLNPLMKVGDQVAEA LLYHTDMNKQQRRDRVIELFNQVGMPKPEAMYDMYPHELSGGLRQRVVIAMAVACKPEII IADEPTTALDVTIQAQILDLLKKIQKESDSGIILITHDLGVVAETADEVAVMYAGQIVEK ADVKTLFTHPLHPYTRSLLNSIPQSDDVKDDLHVIQGTVPSLKNMPRTGDRFAARIPWIP AEAHEADPQLHEVEPNHFVRCTCWKTFHFQDEG Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:14:46 2011 Seq name: gi|300497236|gb|AEAT01000040.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00268, whole genome shotgun sequence Length of sequence - 43688 bp Number of predicted genes - 42, with homology - 42 Number of transcription units - 27, operones - 15 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 270 - 309 6.1 1 1 Op 1 . - CDS 385 - 1251 1430 ## Ldb1880 putative anti-sigma factor 2 1 Op 2 . - CDS 1265 - 1828 459 ## Ldb1881 RNA polymerase ECF-subfamily sigma factor - Prom 1889 - 1948 3.1 - Term 1945 - 1977 2.3 3 2 Tu 1 . - CDS 1986 - 3293 2203 ## COG0172 Seryl-tRNA synthetase - Term 3440 - 3479 -0.9 4 3 Op 1 . - CDS 3536 - 4030 854 ## PROTEIN SUPPORTED gi|116514699|ref|YP_813605.1| acetyltransferase 5 3 Op 2 . - CDS 4030 - 4623 948 ## COG0398 Uncharacterized conserved protein - Prom 4770 - 4829 6.8 + Prom 4605 - 4664 3.7 6 4 Op 1 . + CDS 4831 - 5634 1118 ## COG0657 Esterase/lipase 7 4 Op 2 . + CDS 5637 - 6497 1165 ## LDBND_1733 transcriptional regulator (xre family) + Term 6498 - 6542 7.5 - Term 6489 - 6524 5.1 8 5 Op 1 . - CDS 6538 - 7035 700 ## Ldb1887 nucleoside deoxyribosyltransferase (EC:2.4.2.6) 9 5 Op 2 . - CDS 7044 - 7715 941 ## COG0518 GMP synthase - Glutamine amidotransferase domain - Prom 7821 - 7880 5.9 + Prom 7831 - 7890 6.3 10 6 Tu 1 . + CDS 7974 - 9359 2256 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 9527 - 9565 4.5 - Term 9507 - 9559 9.6 11 7 Tu 1 . - CDS 9571 - 10653 1528 ## LDBND_1737 hypothetical protein - Prom 10681 - 10740 6.8 - Term 10705 - 10742 6.2 12 8 Op 1 . - CDS 10766 - 14989 5599 ## COG2409 Predicted drug exporters of the RND superfamily 13 8 Op 2 . - CDS 15033 - 15605 900 ## LDBND_1739 transcriptional regulator (TetR family) - Prom 15630 - 15689 7.0 + Prom 15673 - 15732 7.4 14 9 Tu 1 . + CDS 15754 - 15999 261 ## Ldb1893 hypothetical protein - Term 15959 - 16011 6.3 15 10 Op 1 . - CDS 16038 - 16952 1450 ## LDBND_1741 beta-lactamase class A 16 10 Op 2 . - CDS 16984 - 17901 1353 ## COG0598 Mg2+ and Co2+ transporters - Prom 17927 - 17986 5.6 + Prom 17891 - 17950 4.3 17 11 Tu 1 . + CDS 17982 - 18866 1387 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 18 12 Op 1 . - CDS 18863 - 19384 731 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 19 12 Op 2 . - CDS 19421 - 20008 988 ## LDBND_1745 esterase 20 13 Tu 1 . - CDS 20518 - 21363 1189 ## Ldb1900 hypothetical protein - Prom 21423 - 21482 3.9 + Prom 21334 - 21393 7.6 21 14 Tu 1 . + CDS 21490 - 22320 1234 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 22326 - 22373 8.2 + Prom 22424 - 22483 7.6 22 15 Op 1 . + CDS 22705 - 23571 434 ## LDBND_0118 hypothetical protein 23 15 Op 2 . + CDS 23632 - 24033 282 ## Ldb1902 hypothetical protein + Term 24061 - 24101 6.1 - Term 24049 - 24088 8.4 24 16 Op 1 . - CDS 24119 - 25003 271 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase - Prom 25056 - 25115 5.6 - Term 25104 - 25130 -0.6 25 16 Op 2 . - CDS 25167 - 25910 1125 ## COG2461 Uncharacterized conserved protein - Prom 26032 - 26091 5.8 26 17 Tu 1 . - CDS 26120 - 27742 2484 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 27885 - 27944 7.2 + Prom 27732 - 27791 7.6 27 18 Op 1 . + CDS 27929 - 28996 1601 ## LBUL_1774 hypothetical protein 28 18 Op 2 . + CDS 29065 - 29979 1574 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Term 29986 - 30021 1.9 + Prom 29990 - 30049 4.4 29 19 Tu 1 . + CDS 30127 - 30924 887 ## LDBND_1756 LysM domain + Term 30933 - 30977 4.1 - Term 30916 - 30969 8.4 30 20 Op 1 . - CDS 30980 - 31537 1121 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) 31 20 Op 2 . - CDS 31591 - 32505 1336 ## COG1072 Panthothenate kinase - Prom 32532 - 32591 5.8 + Prom 32491 - 32550 5.0 32 21 Tu 1 . + CDS 32608 - 33177 890 ## LDBND_1759 lysophospholipase L1 related esterase + Prom 33201 - 33260 2.9 33 22 Op 1 . + CDS 33280 - 33723 696 ## COG3279 Response regulator of the LytR/AlgR family 34 22 Op 2 . + CDS 33729 - 34478 952 ## LDBND_1761 hypothetical protein + Term 34484 - 34530 5.0 - Term 34470 - 34516 8.2 35 23 Op 1 . - CDS 34540 - 35370 1035 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 35392 - 35451 3.2 - Term 35489 - 35530 -0.9 36 23 Op 2 . - CDS 35641 - 36939 598 ## COG0675 Transposase and inactivated derivatives - Prom 36985 - 37044 7.3 37 24 Op 1 34/0.000 - CDS 37140 - 37796 390 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 38 24 Op 2 . - CDS 37808 - 38449 1139 ## COG0765 ABC-type amino acid transport system, permease component - Prom 38469 - 38528 6.2 39 25 Tu 1 . - CDS 38813 - 41092 3825 ## COG3973 Superfamily I DNA and RNA helicases - Prom 41112 - 41171 6.1 + Prom 41209 - 41268 5.4 40 26 Op 1 . + CDS 41288 - 41950 1279 ## COG5549 Predicted Zn-dependent protease 41 26 Op 2 . + CDS 41965 - 42618 1003 ## COG0406 Fructose-2,6-bisphosphatase + Prom 42623 - 42682 3.8 42 27 Tu 1 . + CDS 42729 - 43421 813 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Term 43436 - 43473 -0.8 Predicted protein(s) >gi|300497236|gb|AEAT01000040.1| GENE 1 385 - 1251 1430 288 aa, chain - ## HITS:1 COG:no KEGG:Ldb1880 NR:ns ## KEGG: Ldb1880 # Name: not_defined # Def: putative anti-sigma factor # Organism: L.delbrueckii # Pathway: not_defined # 1 288 1 288 288 486 98.0 1e-136 MKNTDLMDAMGGIKTEYIVEAAASRGQKKVIPLSAKRKPWVRLVAGIAAAAAFSVALPNT SPQVANAMQNLPVVGNYFKLVTFRDYHYESRKHSADISVDKVAVSGVTGPATKEAKKSSQ AVNREIVQETDRLTKEFKASLKKGGYGSLTVKTKQVTNNRYWYVVKLTAVQTQADSGESS RYYVFSKASGKQVKLGDLFKSGSNYQKAISQNIIKQMKQEMKAEKNKSYFLKENGNPDGF SQIKKKQQFYINKKNQVVIVFNQGEVGPMSMGSQSFVLPNKLVAKLQR >gi|300497236|gb|AEAT01000040.1| GENE 2 1265 - 1828 459 187 aa, chain - ## HITS:1 COG:no KEGG:Ldb1881 NR:ns ## KEGG: Ldb1881 # Name: not_defined # Def: RNA polymerase ECF-subfamily sigma factor # Organism: L.delbrueckii # Pathway: not_defined # 1 187 1 187 187 356 98.0 3e-97 MRETEIIGQFFARDEAALTSVQSEYGAYCSTIARNILRDKEDVEECLNDTWLKAWNTIPP KRPQSLLAYLGRVTRNGALNMVRDQKRQKRAGDQYTTSLDEIGELSGAVQGQAELEGIES SALTEIINDFLAGLPKEKRIIFVQRYFYMDAVSDIAAANGMTVSAVKVSLLRMRRKLGKK LQEEKYI >gi|300497236|gb|AEAT01000040.1| GENE 3 1986 - 3293 2203 435 aa, chain - ## HITS:1 COG:L150515 KEGG:ns NR:ns ## COG: L150515 COG0172 # Protein_GI_number: 15673694 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Lactococcus lactis # 1 428 1 422 423 557 64.0 1e-158 MLDIKVIRENLDWAKEKLATRGIKPEQLDELVAIDAKRREAMVQCENLKAERNEVSKKIA AAKREKADASEAIANMREVGAKIKELDKEVDELQEKQEYILLRLPNFPADSDPIGPDESY NEEVRRWNEPTKFDYQPKAHWDLGTDLNILDWDAASKVSAARFVYYKGAGALLERAVYNF FLDENTSEGYTEVITPSLVNNDSMQGTGQFPKFTEDVYTIVDNDDPEVARNLTLIPTAEV PLVNYFRGDIIDGKNLPINVTALSPAFRSEAGSAGRDTRGLIRMHEFRKVEMVKVVKPED SWKELENLTHNAEHLLQKLGLPYRVVALSTGDASFTSAKTYDLEVWMPAQDTYREISSCS NCTDFQARRAQIRYRDEDGKVKLTHTLNGSGLAVGRTVAAILENYQNEDGTVTVPEALRP YMHGMTKITPEVKWH >gi|300497236|gb|AEAT01000040.1| GENE 4 3536 - 4030 854 164 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116514699|ref|YP_813605.1| acetyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] # 1 164 1 164 164 333 98 1e-90 MESERIYLRPVGPEDAELLLSWGQDPYYQETAGFAHYRNLAEAEEGALAYQQRPASYMIC LKKGQAIGLLELYPRDGQSRELGFLLDKKYQGQGYMTESINCLLGEAFKDPEIKEIWAGC RANNLRPQHLLQKLGFRQMYEVDYRQIPPFLDFSAKYYLLKRSE >gi|300497236|gb|AEAT01000040.1| GENE 5 4030 - 4623 948 197 aa, chain - ## HITS:1 COG:L114884 KEGG:ns NR:ns ## COG: L114884 COG0398 # Protein_GI_number: 15672877 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 7 190 10 194 201 142 44.0 4e-34 MSYEQSRKLINRLTIISTIVIIGLCIYWYQLGIFTSQAKMSAYLAGKKILGPIIFVLIQI IQVVIPIIPGGVSLLAGVVFFGAGPGFIYNYIGIVIGSLINFFLARYYGKSFILHIVSEE SLEKYTKWTKNQKKFNWFFAICILAPVAPDDLLCLLAGLTEMKPWTYFWIIVLCKPWTIA AYSLGLVYGARWIMRLM >gi|300497236|gb|AEAT01000040.1| GENE 6 4831 - 5634 1118 267 aa, chain + ## HITS:1 COG:L141530 KEGG:ns NR:ns ## COG: L141530 COG0657 # Protein_GI_number: 15673289 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Lactococcus lactis # 19 210 15 207 257 85 32.0 1e-16 MVVTVNNIAYDLKHGLKTDIYYPNDTDSQTKILIFWHGGGWFRGSKESIRDVAIDLANAG FMTFVPDYRLAPANHFPAAHEDALNFAAWLLASNYTDEGDENNIVQIGASSGGTLALKVA GMYGFPTVTWSAPVDFSSWLADHQEVKPSVNAKEELGLTKQQAINEAFYKYFVLTYAGSE DSDLLADLDAQSYDYTKLGRLLMLNSAAELTDLAGVTDFAGRLAGRGHQVDLEIIPGHGH AMDYGREYLRESMTYLNYALSLKTGSE >gi|300497236|gb|AEAT01000040.1| GENE 7 5637 - 6497 1165 286 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1733 NR:ns ## KEGG: LDBND_1733 # Name: not_defined # Def: transcriptional regulator (xre family) # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 286 1 286 294 518 99.0 1e-145 MINIEKFIKIRKSLKLSQNELCNGICTQSTLSKFENNGQIPSFKILKQLCERMNISLSDI MLTSTESEIAQKLFSADFYFITYDYDQVRKILKQVNEKKIRDKQDLLHYNYLCGQLALDG DHNDVSALFYFNNILTTDNLKADNIYRLLALKGCSQVYASQDMDKASHYFDQILGQIKKV EIKDSLRELQVMSILTAAGEFYGQNGQYKHADDLLNYAYELASSHHVVYFLARVGYQLAL DDLAQKRSLNTALEHLHDSLAFARLNKNEVILKEGGKLLKELEEKA >gi|300497236|gb|AEAT01000040.1| GENE 8 6538 - 7035 700 165 aa, chain - ## HITS:1 COG:no KEGG:Ldb1887 NR:ns ## KEGG: Ldb1887 # Name: ndt2 # Def: nucleoside deoxyribosyltransferase (EC:2.4.2.6) # Organism: L.delbrueckii # Pathway: Pyrimidine metabolism [PATH:ldb00240] # 1 165 1 165 165 350 100.0 9e-96 MTATARIYLGSSFHRDHHQARAKQVREYLAANPTVEHVHFPFDQQVTDPAEDPNVGFGDE RSLLWKQQTYQNDINGLSMANCGVFLYDMDELDDGCAFEIGFLRAQNKPVIIVPFTNQPE KKPIMNLMLSEGATAFIKGDQELELLKTYDFNNCPCRPLTGYGTI >gi|300497236|gb|AEAT01000040.1| GENE 9 7044 - 7715 941 223 aa, chain - ## HITS:1 COG:lin0511 KEGG:ns NR:ns ## COG: lin0511 COG0518 # Protein_GI_number: 16799586 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase - Glutamine amidotransferase domain # Organism: Listeria innocua # 1 220 1 220 226 166 41.0 3e-41 MRINVLQHTPNEGPGAIKAWAEDRGNKVYVYHPETFGIFPKADETDMLVVLGGPMSPGDD LHWLEEERQLIKDCLKQHLPILGICLGAQQIAICLGSSVHPAAHKEVGWAPVYKQNDAIA GLPDKLLALHWHQDMFEMPAESHLLYSSDLLANQGFLVNGNVIGLQFHLEPLADNVREIV INDGAYAESGNDLHQTPAEILAQPLPSANKRAIYTMLDYLSVH >gi|300497236|gb|AEAT01000040.1| GENE 10 7974 - 9359 2256 461 aa, chain + ## HITS:1 COG:SPy1067 KEGG:ns NR:ns ## COG: SPy1067 COG1012 # Protein_GI_number: 15675059 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 4 452 3 452 465 477 53.0 1e-134 MAKYESVNPYTNEVFASYENPTDQQIEESLALAHALYKKWRHEEPSSRAAILKDIAAKFQ EKEEEMAKTMTLEMGKKLSEAKEEVEICIGILNYYADHGPELLKPVDLPNPYGRAYYLKQ ATGVIMACEPWNFPLYQVIRVFAPNFVVGNPMLLKHAHNVPSSAALAAKIVKSGGAPEGS LLNLYLSYSQLDQVIADPRVQGVALTGSERGGASVAENAGKNLKKSTMELGGNDAFIVLS DADPAVLKAALSDARTYNNGQVCTSSKRMIVLADRYEEVLADMKEIYSGLKWGDPLEDST TLPPMSSQAAKEKLAKQVEAAVAGGAKVYYEYPEIDAPGAFSRPIILTDMTKDNPMFDQE MFGPVCVVYKVKDEAEAIALANDSSYGLGSSVISSDIKHAEEVASQIETGMTVINGRWIT DGSLPFGGVKKSGYGRELSPLGLNAFVNEHLVIDFTDQNQQ >gi|300497236|gb|AEAT01000040.1| GENE 11 9571 - 10653 1528 360 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1737 NR:ns ## KEGG: LDBND_1737 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 360 1 360 360 644 98.0 0 MKKCPNCGQALTGQEKACPNCGFNVEKYRRDYFTEEAVEENVERREAKREEADRSLEKES VDKLSRSAYQQKQERNAFTGNLTAEKMLQWMRDNTTIAFLVGVGLLIIMSFSRPLGWTAF AVSMALLIWTGHRDSQGEYTADRNLTEYIRNGASKVFNAFDDKESEIEEKSEDFTQAHPK FEAKVEKVKKKTKKPRNFGIIQLSIILTSLITLVLLFLGTGFVTSSSKLTVASVFFEVAN RQIAAGKIVPALILYLFLAIFLLLPVFIMLAVSQNTRVSRVRAFALSLAESLVLIYLFYQ LAQTTSAASYLSQAVSSLKSYAVAIGISGYLLILVSCLTTVLAGINMFQPMVKPGQNSEE >gi|300497236|gb|AEAT01000040.1| GENE 12 10766 - 14989 5599 1407 aa, chain - ## HITS:1 COG:lin1189 KEGG:ns NR:ns ## COG: lin1189 COG2409 # Protein_GI_number: 16800258 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Listeria innocua # 1 785 1 777 1066 343 30.0 1e-93 MKKLLKNHLGALIAWVLILVISLVALPNVESLTRAHSEISLPSNVESEAAKLIKNEWGSK KKNTYEVAVVFNKKSGKLTETDQGNIEASIDRLTSNQKKYGIKDYLAPQDNIATKKLLKS KDGTTWVMQMNIAKSHGTISQVNDEINKAVKTSGVRTYVTGADVLNNDFTSSIREGIKKT ELITVVFIFIVLIIVFRSPVVPLVSLLTVGVSFLVSFSIVTNLVNQVNFPFSNFTQVFMV IVLFGIGTDYNILLYNHFKEDLGNGLGVAEATKDSIKKAGRTILYSGSSILIGFSALGLA NFSVYRSASGVAVGVLVLLIVLLTLNPFFMATLGKKMFWPSKEFAGENPSKMWHGISSAT LKRPVVFLAAVAVVVAPFFVTYSNVLNYDDTAEISDSVPSKQGLNLVQKHFSEGMAMPSY LYIKSDHTLDNEKDLKLIDELTRKLRNSEGVDKVMSATEPYNEKIKLLYVKKQLKSVTDG TAKLEKGVGKLTKGSEQVTSGAKKLANGADRLDEGTGTLSDGAKNLYTGTVKLYNGSIAL YDGAGTLFNGTKTLSVGADALYSGTRKLSSGANTLSAGTQKLKSGTSSLASGSQTLANGT GSLATGAQTLRDGAGTLKNGTASLYTGAGTLKNGTASLYTGTGTLKNGTSQLLTGSTTLK NGTSDLATGANSLYTGTQTLTNGAKDLTANMNTLVAGLDQLKSQLSENASSLNADQLDQL SSGLTDLNNGLQSLNSKVSQISVPNIDTSKISSLVSGLQSLQGQVGSLQTGLTEAKTGLG AANSAAGELASKISQDPELKKQLQPVLDKLNAGLGSAGSGLTTAGTAATNMKSAASGIQS AAGSLGSSTSAASTADLSTEVQQLQAAVSQLASGSNTLNTQAASGINSLKSGLSKIGQMQ SAVDALATGAHKLYTGSNSIYSGLSKGMAGALALSQGANKLNSGAASLYNGISQVNTGAN SLYTGVGQVNSGAASLYTGAGKLNTGAASLYSGTGSLVSGANQVNAGASAVASGASQVNS GAGQVNSGAGQLATGLASGVSGAAQLANGASRLTSGAGQLQSGASQLQNGLAQGVNGSSQ LAEGADKLQSGTSQLSSGASKLAEKTPAITSGLTAVNNGLVSAGSYLNGLRKSKASDTFY VPSYVLKHNADLQKSLMVFLSPDKKSAMIIIILDSNPSSESAAKHSQALSAMARKSLKGT DLGKAEVEMGGQSSTIEDTKNTASGDFTRTMAIMLIGVGIALILVTRSLLQPIYILGTLL LAYISSLSITRWVVSGVMGRSTLAWNVPFFTFIMLIALGVDYSIFVMMRYRDSDPHALPS ARILKACTAIGTVVISAVVILGGTFAALIPSGVPTLIEVAIGVIIGLAILIFLMPINLSA STKLTYEGFPWPKWAGRKKGLSFGKKS >gi|300497236|gb|AEAT01000040.1| GENE 13 15033 - 15605 900 190 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1739 NR:ns ## KEGG: LDBND_1739 # Name: not_defined # Def: transcriptional regulator (TetR family) # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 190 1 190 190 331 98.0 1e-89 MTQKRTLDLDKVLAKATEMIESRGLSEMTMPNLAKALGVRSQSLYHYVKNRSQLLSLVAA SRIRLLYQDLLKQLVGLSGHEALFKFADVVRDRLLEDQALATLLYHVDEFSDDLEVVKEV VKILDLGDQLQVDTEHVVSQHALVGAVLGYVFLDRFIDGQEKVESPREAEENYHEMIWRL VSPNVQQSNA >gi|300497236|gb|AEAT01000040.1| GENE 14 15754 - 15999 261 81 aa, chain + ## HITS:1 COG:no KEGG:Ldb1893 NR:ns ## KEGG: Ldb1893 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 81 1 81 81 127 100.0 1e-28 MKIWWFANFYWFSLLIYLNVFMFNFHYADGSSINPFVVTFLLLAICIMVGEFQFAWYMWL ATKTYKPRKRKKTQNDSTVWL >gi|300497236|gb|AEAT01000040.1| GENE 15 16038 - 16952 1450 304 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1741 NR:ns ## KEGG: LDBND_1741 # Name: not_defined # Def: beta-lactamase class A # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: Biosynthesis of secondary metabolites [PATH:lde01110]; Two-component system [PATH:lde02020] # 1 304 1 304 304 461 98.0 1e-128 MKNNIVVGALIASLLAFVVYTRTNKDAEMRKVTVVQVKKSGKVKKIISSTDKEPNVNSIE YDNQVKSSKGSDKQLVKAIKKAMGQDVSYQVAAYDLNKSSHFAEVTNTKSGQDSQKIFYL YLLLALYAQEKSGKIGASTTIKVTKADKAGTSTAIAVGISYGPSYLREQMLKGNKTAANA LLRTIGTKQVNKILKQLGASQTKVTGTFSKSVVGKTTASDLAKIMVSIYQGKLVGSYNQQ VLTAMTGKTKLASKAKGTIYQYADGNLEVALISNNGHNYVVSAWSSKTDDFASLGQAVKQ VIEK >gi|300497236|gb|AEAT01000040.1| GENE 16 16984 - 17901 1353 305 aa, chain - ## HITS:1 COG:lin0568 KEGG:ns NR:ns ## COG: lin0568 COG0598 # Protein_GI_number: 16799643 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Listeria innocua # 1 301 1 298 301 151 35.0 1e-36 MIKQQIFPIETDFNWYDVNGLNEADSRRLQTEFYFTPEIISYVSDRHERPHYDYDQYTDT HLLVYDVPVWPTTTIKHFTSRPITFLLQDKNLFSFHTIETSYVFDEFNDPKVLRRLSHAQ DVTELLVTFLMYASQYFQRAITQLDAERNDLDVKLSDDIDNKDLVELSNIEKSLVYLSSS IQTDQMMLRSLQHSRLTFSEAAKEMLDDVLIESSQSSEMVQISRQVTKTLSSTSNNMLNN NLNDTMKFLTVWSIVLTIPTILTGFYGMNVNLPVLGASYDWIIIILITVLLMVWLIFFMR KHHLF >gi|300497236|gb|AEAT01000040.1| GENE 17 17982 - 18866 1387 294 aa, chain + ## HITS:1 COG:mll0601 KEGG:ns NR:ns ## COG: mll0601 COG0596 # Protein_GI_number: 13470803 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Mesorhizobium loti # 5 294 9 300 301 202 38.0 5e-52 MQITEKYLPFGNWQTYCRIVGEATDRAPLLLLHGGPGSSHNYFEVLDQVAEKSGRQVIMY DQLGCGNSSIPDDQAETAYTAQTWVKELENVREQLGLDQIHLLGQSWGGMLALIYLCDYQ PKGVKSLILSSTLASAKLWSQELHRLIKYLPKGEQAAIKEAETTGNYDSPAYQAANAHFM GQHAIKLTPDMPEPVLRKKKGGSLAYLTGWGPNEYTPIGNLHGYEYTDRLKDLHLPALIT SGTDDLCTPLVAKSMYDHLPNARWELFAGCGHMPFVQENAKYQELLSDWLISQD >gi|300497236|gb|AEAT01000040.1| GENE 18 18863 - 19384 731 173 aa, chain - ## HITS:1 COG:BS_paiA KEGG:ns NR:ns ## COG: BS_paiA COG0454 # Protein_GI_number: 16080268 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 4 173 3 172 172 148 45.0 5e-36 MTEVKIVQVSEKDLPELIAISRETFAETFGKDNSPEDMAKFLDENYNEDKLGGEIATPGS FFYFLKADGEVAGYLKLDVDDAQNEEVDPNGLEIERIYLRKSFQHRGLGKQLFEFAEEKG REWGKSVLWLGVWEHNENAKSFYASRGLTRFSEHVFVLGDDRQTDFLLKKALV >gi|300497236|gb|AEAT01000040.1| GENE 19 19421 - 20008 988 195 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1745 NR:ns ## KEGG: LDBND_1745 # Name: not_defined # Def: esterase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 195 1 195 195 357 99.0 2e-97 MEKEMTLISAKGKLKGIWGEAVNPIEGMTPLVILAKTGDKDQAYWLSRYLNDAGILTFTF EAEDAASAISGYHLAFDELRNDDRVASEYIVFAGYGEAGNAAAVAASEIGRSVRGIFLMS PVIKDWDKIKGYQGRSYIVAGSDDDQAPLASLEMMAKQLKQGELLQMRGAGHDYREEDWE RAGMLLRTWVLTGLN >gi|300497236|gb|AEAT01000040.1| GENE 20 20518 - 21363 1189 281 aa, chain - ## HITS:1 COG:no KEGG:Ldb1900 NR:ns ## KEGG: Ldb1900 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 281 1 281 281 423 99.0 1e-117 MAKKRRRKKRQNTSLLSVAIAAAAIIWGVYTKGGQGNLTSSSSNTSTSSSAVSSAQTAKT VYGGLAKSDYQKLAQETFKSGGKGWHYVNNNHSTLVKSAWKVNRVIYSNLDSQNRTSSSN TAFLEKRNVANDSLRVRQYVQPTGWHSNRQNGTQIYNRGHLIAYSVSAGIDQDGNYNPKN QSGDQNNPKNLFTQSAFSNQKIQTIFESKVRSALRSGKKVIYQATPIFRGRELMARGINL QAVSTDGSLDFNVYIYNVQPGYQFDYETGRAKIDRGMQVSE >gi|300497236|gb|AEAT01000040.1| GENE 21 21490 - 22320 1234 276 aa, chain + ## HITS:1 COG:L67726 KEGG:ns NR:ns ## COG: L67726 COG0656 # Protein_GI_number: 15673225 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 2 276 5 279 280 336 55.0 3e-92 MEEFKLNDGNQIPKIGFGTYKIKGYQGARAISQAIENGYRLLDSAARYENEGALGKAIRS SSVARSQLFVTSKLPGAHHEYKAAINELEEGLLRSGLDYFDLYLIHWPNPLEDHYVEAWQ ALIDAQRFGLVRSIGVSNFEPGHIDRLIKETGVTPAVNQVELHPYWSSRAVRAYDDEHGI VTEAWSPLMRAGEVFQEDLIQKLAAKYGKSPAQVILRWEVQLGVVPIPKASSSQHQLSNL DIFDFSLTEEEVTALTDLDKADGRRPDRDPNQHQEF >gi|300497236|gb|AEAT01000040.1| GENE 22 22705 - 23571 434 288 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0118 NR:ns ## KEGG: LDBND_0118 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 8 287 15 292 292 197 43.0 3e-49 MKKLLTWLLLLSASLFFAHPVNADADTTANSEVFASIYRQGVSKGILTESNSSEAEFVKY CSTEAFPMYLKYVEVDPGTSFEQYVADENYFVSCNPNNDHPDTISADNSQSKGKGYSIFS SFIAAKSGYSMKAGDILVCHGTDSAGIFAGHAAFATSANYILEMPGPNRTVEHPSKESFF KKHTGKGKYVDVYRIKKHPHYADAASTYAYRHLYKNPKDRPKYGFQSGLYSMKDSYCSKY VYYAYYKVLPKGTLKTYNNWHIVHPFTFVGNFQGDFKASYLHQITSWK >gi|300497236|gb|AEAT01000040.1| GENE 23 23632 - 24033 282 133 aa, chain + ## HITS:1 COG:no KEGG:Ldb1902 NR:ns ## KEGG: Ldb1902 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 126 19 144 148 125 69.0 7e-28 MFLIEAVLIWFMGAHSVGFQTDFESLTIGWALIIVSIALLLAAILIWTSKFSVLFWITVV VLVAGFIALTLLRVMTAGLAFDVLGSAIILFILRYGKFTKPYAGPIMVVAINLTYIYLLS VPYDWFFNYWFTK >gi|300497236|gb|AEAT01000040.1| GENE 24 24119 - 25003 271 294 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 1 290 9 319 319 108 27 4e-23 DIGGTNVKYALMDNEGQLLEKGKRTSADNLDDFVAALYEVGDQYKGKFTGIAVCAPGKID TEKMIIHYGGALTFLDGLNLKETLGARYGVAVSVENDAKAAALCEQWLGELKGVDTGAVM TLGTGVGGGIVVGGKLLHGSSFQAGELSWMITNQGAGLKEMAAYTAARCSAVRMVEKVNQ ELGNEDLDDGLAAFAAIKSGNEEAGKIFRQYCLDVAVMILNLQTVINGEKVVIGGGISAQ EILIEEIRRQFGEILQDNPILGQQVIPPEIVAAKFRNDTNLYGALFALLQGMQK >gi|300497236|gb|AEAT01000040.1| GENE 25 25167 - 25910 1125 247 aa, chain - ## HITS:1 COG:SP1472_2 KEGG:ns NR:ns ## COG: SP1472_2 COG2461 # Protein_GI_number: 15901322 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 18 223 4 207 227 112 37.0 4e-25 MAEPKWLQDMNPEEYLKEDFEATGHSRYTVDGLEKNDPEWLDKAAAKVNAAEGDDYVKLD SGLLTVNQINWMLRNTFGEMTYVDDNNQFLWYNRPQDPNYKMKARRVPAQVGDTMGAVHP DIRDVIPTAKKVVHALRTKEGGHDEVWMPVPTGNLTELVLHYYKRVEDEEGNYMGIYEWV QDIYPFVKYFCESTGQKLVVDPDAATGATYRRNSDPDAKTGPSTKAEAVKEEEKPAEPEA TSGASHH >gi|300497236|gb|AEAT01000040.1| GENE 26 26120 - 27742 2484 540 aa, chain - ## HITS:1 COG:SP1342 KEGG:ns NR:ns ## COG: SP1342 COG1132 # Protein_GI_number: 15901196 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 12 518 4 511 535 174 26.0 4e-43 MFMKERDYPMCLKYARKSQVALFSFLAAIKACNVLFVAYMLKVMLNIASSGKADYGRLVG FAALTAGGQLLFMASNFFYETTKMNIIRSVNMTLKEANLRYLIDQNSLDTKDGLSFMTND LKQIETNRVTAQLDIIYQSLTFVGSLAFALYNSWEMTLIFIVATLAPAGVQMITSKIITK KSKIWTQKNAVYTQYVSDSLNGAQSARLYNVRTNIVKRAMGAAGDMETALRSMTLTQAWA LELIYSAAELFCFIIPSTIGGIMMMQGRLAVGTLVMMVDLAINFISPVVTLFNEFNQVKS TVPMWQRTQRALNYVQKDDNCPVDHFDGMEIRDVAYVTKHSKRQIFEHVNIKVKPGEKIL LMAPSGWGKTTLLRLMLGIYTPSHGEILINGEEVTGDWYKAHNFYSYVNQKPFMFDDTLR FNVTLGRQVDEEQLLMACHEAGLDDLIQENGLDYPVGENGNNLSGGQIQRVEIARALLSG RPILLADEATSALDPRLSLEIHETLLGNPKVAVIEVAHKISDVEKAMFDQIIVLDKVKPA >gi|300497236|gb|AEAT01000040.1| GENE 27 27929 - 28996 1601 355 aa, chain + ## HITS:1 COG:no KEGG:LBUL_1774 NR:ns ## KEGG: LBUL_1774 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 355 1 355 355 658 97.0 0 MKLVELHTKADQLSGSYYLGYLVYQSADAATLISLDDDANAGGVLVINNQDILTSVDESP SLAYCQHLIDEGKSTDPFALMPLNQELLKTPLTSLSAASQAALEKDLVVNITLTSGIVYT GIIALAGPTEIQLKQIGDDYELDPLCLVIPLSAISSLELNAPLNKLWKKYQAVKEQFAGQ NPYGLVELYLDWLDDARFGSCLLGLVLDQSDQFLLFESLNDYGQLESICLVNREDVVHES VNSAAIDFSSFLAAYNQKNEIFDPGHLGKLAQSLDHVPTAREVIEKAGKQLVSVDDYELA GENLGYVTAVDEAGFTIEDPESGQEVSHLFENVCALDLASTELEKMREFLAAQNQ >gi|300497236|gb|AEAT01000040.1| GENE 28 29065 - 29979 1574 304 aa, chain + ## HITS:1 COG:SMc04033 KEGG:ns NR:ns ## COG: SMc04033 COG0596 # Protein_GI_number: 15966569 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sinorhizobium meliloti # 12 293 16 290 296 149 33.0 9e-36 MKQGTTILTLDNGYHLWTNTQGTGDIHLLCLHGGPGGNHEYWEDTAEQLKKQGLNVQVHM YDQLGSLYSDQPDYSDPKIADKYLTYEYFLDEVEEVRQKLGIDNFYLIGQSWGGLLVQEY AVKYGDHLKGAIISSMVDDIDEYVAAVNRRRQEVLPQTEIDFMHECEAKNDYANQRYQDD VQILNINFVDRKQPSKLYHLGNLGGTAVYNAFQGDNEFVITGKLKDWHFRSELPKIKVPT LLTFGEVETMPLETAKTMQKLIPNSRLVTTPDGGHHHMVDNPDVYYKHLADFIREVEAGT FQGE >gi|300497236|gb|AEAT01000040.1| GENE 29 30127 - 30924 887 265 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1756 NR:ns ## KEGG: LDBND_1756 # Name: not_defined # Def: LysM domain # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 265 1 265 265 336 99.0 6e-91 MTIGKELQKQRRAKQLSLEAVSQTLRVDQATLQKIEADDFQGLNPVMVRSCIRQYASLLG LDGAQLLDQFTEPAAAGKDIPAAKPAIPVKEKVTEVRAANPAPVKEASPADKAKEILDKS KVPHGFKAIFKFFDAINLDKLLKIGIWVILGLAVVGSVAGGFNALASKPTSISHSSSSSS SSSPSSSSSSKPAQDDSAKPDENKPSHDDQPSQPSQSQSNEKQVSSSSEASSSSSVASSS SQEQSRQASSSSSQSSTDTTTDTNE >gi|300497236|gb|AEAT01000040.1| GENE 30 30980 - 31537 1121 185 aa, chain - ## HITS:1 COG:SPy1821 KEGG:ns NR:ns ## COG: SPy1821 COG0231 # Protein_GI_number: 15675650 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Streptococcus pyogenes M1 GAS # 1 185 2 185 185 177 51.0 1e-44 MQAIELKKGMIFDDGGKLMLVMAANHHKPGKGNTVMQMDLRDVRAGSVIHKTMRPSEKIE LVEVVKKNAQYLYAEGDSYNFMDTETYEQYAISGDQLGDDVKYLMPNIEVILEFTEDGEL LAVQLPSTVNMKVVETQPGIKGATAASGGKPATMETGLVVTVPDFINEGDELVINTLEGT YKGRA >gi|300497236|gb|AEAT01000040.1| GENE 31 31591 - 32505 1336 304 aa, chain - ## HITS:1 COG:L66222 KEGG:ns NR:ns ## COG: L66222 COG1072 # Protein_GI_number: 15673426 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Lactococcus lactis # 3 304 6 306 306 286 48.0 5e-77 MRNYTEFSRQAWAALTPKTKLAVTNEELAKVKSLGDQLDVKDVDEIYQTLLNYIHLAYQA KQATAAKKAEFLQLPESKVPYIIGISGSVAVGKSTTARLLQLLLTRYYPDLKTQMMTTDG FIYPNQELEKRKLMPRKGFPESYNMQMLRDFLQDVVSGKNDVVYPLYSQELSDIVPGRYG HVEKPDILIIEGINTLQLPESGQLVTSDFFDFSIYIDAEEDLIEKWYMQRFKKIMKMKKN DPSNFYYKLANGPEDEALRLAEETWQMVNLVNLRQYIAPTKERANLILHKVEGHLIDKIY LRGF >gi|300497236|gb|AEAT01000040.1| GENE 32 32608 - 33177 890 189 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1759 NR:ns ## KEGG: LDBND_1759 # Name: not_defined # Def: lysophospholipase L1 related esterase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 189 1 189 189 365 99.0 1e-100 MKKVVLFGDSIFNAYDGQKDTDRLTKALAKRLGDAYEVVNISVSGACAQDVLPRVGSLPA CDILVVEYGTNDAASWGCSAYDYQEGLESLIKQAQKVTGASDILVLAPSMPDLTNPEMAA AYSLEKLDEYVDIAQRDAGKTNSFFFDLTHKMEKLKDLPSFMIADGLHYSEKGISWLADV LADQINKMA >gi|300497236|gb|AEAT01000040.1| GENE 33 33280 - 33723 696 147 aa, chain + ## HITS:1 COG:SP1915 KEGG:ns NR:ns ## COG: SP1915 COG3279 # Protein_GI_number: 15901739 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Streptococcus pneumoniae TIGR4 # 1 147 2 149 149 96 38.0 2e-20 MQVEFKQDEQLKEDQLIIKAKKLTPEIEAALAFLEEKLAQKITVYQGSDEIILPLTSILF FETSDRHVWAHDREGSYLVKQTLRQLEASLPSDFDRASKSALVNCRQINAVKRSITGCEL GFTASYKKVFVSRRYYQTLISHLHEMR >gi|300497236|gb|AEAT01000040.1| GENE 34 33729 - 34478 952 249 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1761 NR:ns ## KEGG: LDBND_1761 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 249 1 249 249 459 98.0 1e-128 MNKNRKSAVRWGLILIAIAIPLILSQLFPDYFTLFKLFNLSWGQVFWVLLLAWIAWTSFK NRALFFGIFASGLIVKTISEASHFFKWTGYMYLALFLIALGCQLLAGGSQLEVKMNVKTG KKDDDGTSLSYSESIGENGEKVSIESVFSKCVRYVHSQALRKLSVSTVMSPVTIYLDQTQ LKDGRGKLDLDAVFSKVDIYIPREWEVQADASPVFSRFTALNPSGLTADSPLLKVDADLV FSQVTIHRV >gi|300497236|gb|AEAT01000040.1| GENE 35 34540 - 35370 1035 276 aa, chain - ## HITS:1 COG:lin1849 KEGG:ns NR:ns ## COG: lin1849 COG0834 # Protein_GI_number: 16800916 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 5 266 3 264 271 233 47.0 2e-61 MKWFKKILLLGLVLSCFLTTACSNLTKEANQKDTWAKIKKRGSLVIGLDDTFVPMDFRQK DGQLVGYDVDLAKAVCKKLGLKADFQTIDWSMKETELRNGTIDVLWNGYSVTSQRKKKVA FSRSYLRNRQVLVVKKSSGIKSFAQMKGQAIGAQSGSTAQIWLDGSQKVIKPKSKVLYDT IPSAFLDLNAGRIKGILLDETYAEYYIKHEADSKSYQVILNKEVPEDLFAVGMRKGDKNL KKKINQALAELQADGTLAKINQKWFGQKSNYLGKVD >gi|300497236|gb|AEAT01000040.1| GENE 36 35641 - 36939 598 432 aa, chain - ## HITS:1 COG:TM1044 KEGG:ns NR:ns ## COG: TM1044 COG0675 # Protein_GI_number: 15643802 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Thermotoga maritima # 11 375 3 340 405 103 26.0 5e-22 MAEQIEEVPAELIQTRVYELHPNKTMRKVLDEACDYRRYCWNQGLALWNEMYKARQTLKS SLASDSKRLTEEQKVLLKEKPSPSERRVRNMLVADKKDWQYAQSARILQLAISDLGKAWN NFFDKAQPGWGKPKFRSKREARQGFKSDRSKIKEGILYLERARGSSVPKDQWRGFKLSEK PLSDEFGVVSYFKEKSRYYVAIPYKIKVEDVKQPDKTGKATAVDVNVGHFDYTGGRVNVL PKKLDRIYKKIKHYQRQLAKKRVKNGEAACESKNYLKTKAKLQAYYRKASNIQNDLMQKF TTELVKDYDKIVIENLSVKGMLMSHVASKGVHRSMFGKFKQILTYKCDWYGKDLILANKL YPSTQRCAACGNVKKGDDKITLYGNKTHGTKHNEYVCYNEKCPNYNKIVDRDKNAMLSLL ALTEYPELNHAL >gi|300497236|gb|AEAT01000040.1| GENE 37 37140 - 37796 390 218 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 203 1 210 245 154 39 7e-37 MLEVKNLAKSFGNRQILQNMNFSLKDGEILTVVGPSGAGKTTLLRIVAGLETADAGSMSL DGEKYELSQEERGAVGVVFQDFNLFPNMSVLENITLAPQLALKEDKATAEAKAKELLAKL QMADKGGLYPYQLSGGQKQRVAIARALAMQPKMLCYDEPTSALDSALRDQVADLILSLKE SGLTQLIITHDMDFAKKVADQVLEVKTLEHNTSGEKST >gi|300497236|gb|AEAT01000040.1| GENE 38 37808 - 38449 1139 213 aa, chain - ## HITS:1 COG:lin1851 KEGG:ns NR:ns ## COG: lin1851 COG0765 # Protein_GI_number: 16800918 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 1 213 1 213 213 247 66.0 1e-65 MKYVMEILPSLFSGAGMTLQIFFETLIFSLPLGILVSFGLSSRFAPLKWLLNFYVWLMRG TPLLLQLIFVFYGLPIVGLTFPRYMAALVAFVLNYTAYFAEIFRGGNQAIDRGQFEAAKV LQLTYGQTLRKIVIPQVIKIVLPSIGNEVINLVKDSSLVYVIGLGDLLRAGNLATARDVT LVPLVLVALIYLLLIGLCTLLLRQLEKHYSYYR >gi|300497236|gb|AEAT01000040.1| GENE 39 38813 - 41092 3825 759 aa, chain - ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 3 749 4 762 774 502 39.0 1e-141 MVENSDRKAEQAHLDQVLQKIDQKRDKLQQAIAKDKAEARNISAHFYDDIRLDYDDYSTS MDTALSIQQQQQMLKERDNAWQVNARELATLKRLHVHPYFARVDFEEAGEEPESIYIGLA SFMDENNELLIYDWRAPISSIYYDGKIGKVTYYSPEGPVEVDMSKKRQFMIEDGTIINMF DTDETIGDQMLMEVLSEKSSIQMKSIVKTIQKEQNKIIRDTTSDLLFVQGAAGSGKTSAI LQRIAFLLYRYRGNLKSGNVIMFSPNQLFNDYIENVLPEMGEQNMVQMTYWQFIARRLPK MKVQNLFDQFEDRQADTAIGRFKDSLAFYKLATRYGQHLNQSGMIFRNIYFRTKKKPFFS KEEIKELYYSFNENYKLGNRIDATREELIRRLNKRVASEARKVWVSREIEGLSHEQMLDM YDRPDQEFSSEKAERAFLGKKIVIKHLAKVARRINHNGFLNLRGQYLAFLRAVPKMTDLA KYGISEEEWLAHVEEVKAKFKEQEIDLRDASAYLYLYDQIIARQTNLEMRYCFIDEIQDY SAFQLAYLRYNFPRAKFTMLGDLNQAIFTKDESSSLLKQIPGLFDPEKTKLVQLTKSYRS TKQLTDYTKQILRHGEKIESFNRQGPLPQVWGRSDEAEALAALKAALAENDAQKLTTAII TKDLEAAKKLADQLEGVHLISSANQRLVEGNLVLPSYLAKGLEFDAVIMWDASKAAYHEE DETQLVYTIASRAMYKLDLVYAGEKSPLLPTNEATFVKK >gi|300497236|gb|AEAT01000040.1| GENE 40 41288 - 41950 1279 220 aa, chain + ## HITS:1 COG:SP0617 KEGG:ns NR:ns ## COG: SP0617 COG5549 # Protein_GI_number: 15900525 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted Zn-dependent protease # Organism: Streptococcus pneumoniae TIGR4 # 75 218 93 238 240 110 41.0 2e-24 MRRFFNFIKNLLILAIMAAAVVNYHEQIQTFLLEAAGTASTYLEQKGLKSKTLDLSGGIV AESNKKVTKNTTGYRWPKATAKVYIGVKQTDLYNATVNAMAAWNQTGAFTFKQTKNKKNA QIVVVANSKNNGAAGLTTYKYLSHTNRLYSAQVALNTYYLENDYYNYTQARIVNTVEHEL GHAIGLDHRTGVTVMYPTGSIYTIQPKDIKLVKKIYKSKS >gi|300497236|gb|AEAT01000040.1| GENE 41 41965 - 42618 1003 217 aa, chain + ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 4 202 7 206 224 117 33.0 2e-26 MKRIYLVRHGKTFINKYNKMQGWCDTPLTDEGREGAEKAAEALQELPLDIALSSNTLRAS ETCEIIMEKNCNRDLLQHLAYPYFREHFYGYFEGMDNDVAWRMVGAAHGFTNAADLAEHA TCDQIADWTKEADPYHDAEDSKEFWARWQKGFDLIQQLDGAENILLVSHGFAIKTLAQKF AVDGIDTTVHPRNSSISTLVMDEAGNLQMTSYNKLQL >gi|300497236|gb|AEAT01000040.1| GENE 42 42729 - 43421 813 230 aa, chain + ## HITS:1 COG:L1007 KEGG:ns NR:ns ## COG: L1007 COG0584 # Protein_GI_number: 15672046 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 2 229 33 278 281 138 34.0 9e-33 MRTKIFGHRGYPAKFPENSLEGFDYCMHHGAEGIEFDVHLTRDGVPVIMHDENIKRTTNG KGLIKDFSLAELDQFHLANGERIPRLKDLFQLTEESGYEGQLNLEMKTNKFDYPGLPEKI FALADQFKFKQEIIYSSFNLQTLIHAQKIRPEENYNFLTDKRIKDPAAFVKEHGFKGVHP KRLLDTDTPERIWTVDSPLRAKKIIEYGAAGFFTNKFEDMMDLRKRVANY Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:15:54 2011 Seq name: gi|300497232|gb|AEAT01000041.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00238, whole genome shotgun sequence Length of sequence - 3154 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 3/0.000 + CDS 20 - 580 955 ## COG4720 Predicted membrane protein 2 1 Op 2 34/0.000 + CDS 592 - 2310 257 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 3 1 Op 3 . + CDS 2303 - 3130 1267 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters Predicted protein(s) >gi|300497232|gb|AEAT01000041.1| GENE 1 20 - 580 955 186 aa, chain + ## HITS:1 COG:SA2477 KEGG:ns NR:ns ## COG: SA2477 COG4720 # Protein_GI_number: 15928271 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 8 186 6 184 184 166 45.0 3e-41 MNKYMWKLSPKNIAALGIGSAVFVIVGRFASIPSGLPNTNFELVYAFLAMIAMIYGPTVG FGVGFIGHVLLDLMMYGQTWWNWNFAAGFLGFFIGLYALRVNIDQGEFSAKEMVIFNVVQ VVANAIVWFLLGAVGDMVLNSEPAAKVFAQAGLTTLMDGLTIAVLGTILLKFYAGSRVKK GSLHKD >gi|300497232|gb|AEAT01000041.1| GENE 2 592 - 2310 257 572 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 291 523 1 231 312 103 32 2e-22 MTSLIQFRDFSFQYDSQQEPTLHNINLTIEQGEKVLLAGPSGSGKSTLGKCLNGLIPNLD KGTITGQCLIDGKDISQTGLFDLSFTTSTILQDTDAQFIGLTVGEDIAFSLENDCVPQDK MKQVVDRWAKELDLGDLLKQAPQSLSGGQKQRVALAGVLVDESPILLFDEPLANLDPASG YKTMRLIDQMQKKFRATVIIIEHRLEEVLAEKVDRIVLVDDGRILADQKPDDLLKADRLE AVGVRNPLYLDTMKTAGIDLNKFEKLTPLEALPVERDAKDKLLAWQNSYQLPAEKAAGKE LLTLKNVGFAYSADQKYPLKDVNTVIKEGDFISIVGQNGAGKTTLCRLICGFLQNTGEIA WQGEDMAGLSIKERADKIGYVMQDPNQMISQTMIFDEVALGLRLRKVPEDEVKERVGKVL KICGLYPFRNWPVSALSFGQKKRVTIAAILVLEPDLLILDEPTAGQDWKTYTEIMSFLQK LNAAGKTIMIITHDMHLMMEYTDRSLVFAKGRLIADTTPVALLTDEKLVEQASLRQVSLF DLAQHYGLPDPEGFARKFAAYERERLGENANE >gi|300497232|gb|AEAT01000041.1| GENE 3 2303 - 3130 1267 275 aa, chain + ## HITS:1 COG:SA2475 KEGG:ns NR:ns ## COG: SA2475 COG0619 # Protein_GI_number: 15928269 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Staphylococcus aureus N315 # 6 274 7 276 277 278 53.0 7e-75 MNDAVLGYAPGKTFVHRLSATTKLLFLIITSVACMVTYDTRFLLIMCLLSLVLFKVSQVK WRQVSVVVNLIIIFAVLNLILVYVFQPSYGADLYGSKHVLLGSGFFALTAEETFYLFNLL LKYICAVPIAILFLLTTNPSQFASSLNQIGISYRFSYAFSLALRYIPDIQESYWAISHAQ QARGNEISKKAKLADRAKGTVNIVMPLILSSLDRITVISTAMELRRFGSKKKRTWYTSQK LKASDWLSLGVAVLLVLLMLYFWHLNQGRFYNPFK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:16:04 2011 Seq name: gi|300497203|gb|AEAT01000042.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00003, whole genome shotgun sequence Length of sequence - 35640 bp Number of predicted genes - 29, with homology - 27 Number of transcription units - 14, operones - 6 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 38 - 78 8.2 1 1 Tu 1 . - CDS 112 - 1491 1901 ## COG1757 Na+/H+ antiporter - Prom 1523 - 1582 4.2 + TRNA 2034 - 2121 56.7 # Ser GCT 0 0 2 2 Op 1 13/0.000 + CDS 2389 - 3390 1335 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 3 2 Op 2 13/0.000 + CDS 3412 - 4224 1195 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 4 2 Op 3 4/0.000 + CDS 4253 - 5167 1159 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 5 2 Op 4 . + CDS 5177 - 5545 422 ## COG4687 Uncharacterized protein conserved in bacteria + Term 5554 - 5591 9.1 + Prom 5564 - 5623 3.9 6 3 Tu 1 . + CDS 5732 - 6133 240 ## Ldb1797 hypothetical protein + Term 6140 - 6184 7.5 - Term 6135 - 6164 2.1 7 4 Tu 1 . - CDS 6184 - 7554 2152 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 7574 - 7633 5.5 + Prom 7647 - 7706 5.0 8 5 Tu 1 . + CDS 7747 - 8589 1089 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) + Term 8738 - 8781 5.5 - Term 8726 - 8769 5.5 9 6 Op 1 . - CDS 8782 - 9771 1631 ## COG1087 UDP-glucose 4-epimerase - Prom 9791 - 9850 2.9 10 6 Op 2 . - CDS 9852 - 12992 3654 ## COG1061 DNA or RNA helicases of superfamily II - Prom 13124 - 13183 4.3 + Prom 13048 - 13107 5.4 11 7 Tu 1 . + CDS 13134 - 13439 413 ## LBUL_1662 hypothetical protein + Term 13444 - 13497 6.0 - Term 13434 - 13483 10.4 12 8 Op 1 3/0.000 - CDS 13484 - 13894 595 ## COG1396 Predicted transcriptional regulators - Prom 13920 - 13979 4.5 - Term 13960 - 13991 2.5 13 8 Op 2 . - CDS 14003 - 15238 1954 ## COG0477 Permeases of the major facilitator superfamily - Prom 15320 - 15379 4.5 + Prom 15245 - 15304 4.1 14 9 Tu 1 . + CDS 15525 - 16814 2106 ## COG0366 Glycosidases + Term 17008 - 17043 5.7 + TRNA 16918 - 16990 80.2 # Thr CGT 0 0 + Prom 17486 - 17545 3.6 15 10 Op 1 . + CDS 17566 - 18093 736 ## LDBND_1668 hypothetical protein 16 10 Op 2 . + CDS 18110 - 18820 904 ## COG3527 Alpha-acetolactate decarboxylase 17 10 Op 3 . + CDS 18835 - 19221 347 ## COG3339 Uncharacterized conserved protein + Term 19234 - 19269 4.1 + Prom 19599 - 19658 7.0 18 11 Op 1 6/0.000 + CDS 19719 - 21617 2261 ## COG0296 1,4-alpha-glucan branching enzyme 19 11 Op 2 7/0.000 + CDS 21665 - 22813 1873 ## COG0448 ADP-glucose pyrophosphorylase 20 11 Op 3 17/0.000 + CDS 22800 - 23942 1822 ## COG0448 ADP-glucose pyrophosphorylase 21 11 Op 4 10/0.000 + CDS 23958 - 25388 2138 ## COG0297 Glycogen synthase 22 11 Op 5 1/0.200 + CDS 25413 - 27863 3782 ## COG0058 Glucan phosphorylase 23 11 Op 6 . + CDS 27873 - 29675 2174 ## COG0366 Glycosidases 24 11 Op 7 . + CDS 29709 - 31430 2741 ## COG1109 Phosphomannomutase + Term 31472 - 31521 9.1 - Term 31575 - 31623 15.2 25 12 Op 1 . - CDS 31660 - 32889 556 ## COG0477 Permeases of the major facilitator superfamily 26 12 Op 2 . - CDS 32909 - 33190 170 ## 27 12 Op 3 . - CDS 33193 - 33345 81 ## - Prom 33463 - 33522 6.3 + Prom 33343 - 33402 8.6 28 13 Tu 1 . + CDS 33489 - 34334 388 ## LDBND_2022 transcriptional regulator + Term 34348 - 34390 7.8 - Term 34336 - 34378 4.0 29 14 Tu 1 . - CDS 34400 - 35479 2040 ## COG0205 6-phosphofructokinase - Prom 35565 - 35624 8.1 Predicted protein(s) >gi|300497203|gb|AEAT01000042.1| GENE 1 112 - 1491 1901 459 aa, chain - ## HITS:1 COG:BS_nhaC KEGG:ns NR:ns ## COG: BS_nhaC COG1757 # Protein_GI_number: 16078033 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Bacillus subtilis # 3 446 5 450 453 291 38.0 2e-78 MNKQISFKEAVTILILMLVMLGWGVIGFGMSPQIPVLTVIALLIFWLQIRGFEWEEVMKG ISQGISTAIVPIFLFLLIGTLIAVWIQAGIIPFLMVLGFHMISSHFFVPSVFLVCSLVGL AIGSGFTTVSTVGIALFGMGSTLGINPALTAGAIISGAVFGDKMSPLSDSTNLASAVAET DLFEHIKNMMWSTIPAFIGSLLFFFFLGQSNKATSLAGIAAVESSLRQNFSVSFWAALPI ILMFACAWKKVPAIQTLFANIFLAVAMIFVQNPGFKMQKLATLIESGYVSNSGNKTVDAL LTRGGISSMMGTVSLIIMTLALGGILMHLGIIDSAMKPLVERLKKPGWLILTTIMAGIGI NLFVGEQYLSVILPANAFKPAYKRIGLDPLALSRALEDGGSVINYLIPWGVAGSFVASAL GVPVLDFLPFTMFSLLSPVFSILSGFTGIGLKWKQEKVA >gi|300497203|gb|AEAT01000042.1| GENE 2 2389 - 3390 1335 333 aa, chain + ## HITS:1 COG:CAP0066_2 KEGG:ns NR:ns ## COG: CAP0066_2 COG3444 # Protein_GI_number: 15004770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Clostridium acetobutylicum # 169 333 3 168 168 189 57.0 8e-48 MVGIVLASHGSFADGIAESAQMLFGPQDNFAHVILKPSEGPDDIKGKMNEAIASFADQEE VLFLVDLWGGTPFNQANGLLDGHDKWAIVSGLNLPMVVEALTQRMINDKATAQDIATAII KPAKDGIKTKPESLMPAEQKAAAPAAAAGAPKEAIPEGTVLGDGHIKIVGARIDSRLLHG QVATGWIPSLHPDRVIVVSDKVAKDDLRKSMIREAAPAGTVAHTVPLEKMKEISEDPRFG NTRAFLLFENPEDALQTIKNGVDIKTLNVGSMSYSKGKVNANNVLSMDQTDVDTFRELEK MGIKFDVRKVPSDNPENMDSILKKAQSLLDEQK >gi|300497203|gb|AEAT01000042.1| GENE 3 3412 - 4224 1195 270 aa, chain + ## HITS:1 COG:lin0144 KEGG:ns NR:ns ## COG: lin0144 COG3715 # Protein_GI_number: 16799221 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 3 270 1 268 268 264 64.0 1e-70 MDLNAIQVILVIVVAFLAGMEGILDEWEFHQPLVACTLIGLVTGNLTLGIMLGGSLQMIA LGWANIGAAVAPDAALAAVASAIILIKGGQGTKGIGTATGLAITLAVAGLFLTMLVRTIS TAIVHIMDKHAEEGNWRMINVWQWIAVCLQGLRIAIPAGLLLAIPTETVRSALAAMPAWL SAGMTIGGGMVVAVGYAMVINMMASREVWPFFAIGFALAGVKDLTLIALGAIGLSMALMY LALEEKVSKGSGDAAAAGTGDPLGDIIDDY >gi|300497203|gb|AEAT01000042.1| GENE 4 4253 - 5167 1159 304 aa, chain + ## HITS:1 COG:lin0145 KEGG:ns NR:ns ## COG: lin0145 COG3716 # Protein_GI_number: 16799222 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 4 304 3 303 303 412 69.0 1e-115 MTEKKVILSKRDRWDVMWHSQLLQGSWNYERMQNGGWAYSMIPALRKLYPNKEDMAAALQ RHLVFFNTHPYLASPIIGVTLALEEDKANGVEVDDEAIQGVKVGMMGPLAGVGDPVFWYT VRPILGALGASMAINGNILGPILFFILWNLIRIAFLWYTQELGYKAGAAISSDLSGGLLK KVTRGAAMMGMFVLGALIERWVSITFTLKVSEVPIQKGGYIDWTKLPSGTAGIKEALTQQ AAGLSLTNTKVTTLQDNLNMLVPGLAGLLLTFLCMWLLKKKVSPIVIILGIFVVGILFHV WGLM >gi|300497203|gb|AEAT01000042.1| GENE 5 5177 - 5545 422 122 aa, chain + ## HITS:1 COG:CAP0069 KEGG:ns NR:ns ## COG: CAP0069 COG4687 # Protein_GI_number: 15004773 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 122 12 133 135 124 49.0 4e-29 MAQSMNKTVDLAVSGTWFRAMSTYGKVMIGDEAFEFYNEKNVEDYIQIPWDQITYVVADV YFKGKYIPRFEIRTKKDGKFIFITKDPKKTLRAIRKYVPADHMRQALGVWDTIKLFFTRK KK >gi|300497203|gb|AEAT01000042.1| GENE 6 5732 - 6133 240 133 aa, chain + ## HITS:1 COG:no KEGG:Ldb1797 NR:ns ## KEGG: Ldb1797 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 14 133 1 120 120 169 96.0 4e-41 MEPPDNYDEIFEYLRSHTIGEAYADKMLLLLLMLVSQYETHIFLDHDLAKETCPDLLDRD LTELPVADLLEISKKLIVTDHYLGVNVLFKDKKHYSLLRIESGIDADLYKLSKKSKKLVN KLLKRNGLFLVKY >gi|300497203|gb|AEAT01000042.1| GENE 7 6184 - 7554 2152 456 aa, chain - ## HITS:1 COG:BS_ydgF KEGG:ns NR:ns ## COG: BS_ydgF COG1113 # Protein_GI_number: 16077629 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Bacillus subtilis # 7 441 12 446 458 349 41.0 5e-96 MEEKKTQSTYKRTLTNAHIQLIALGGTIGTGLFLGVGNSIQKAGPAVILIYIIVGLFLFI LMRALGELILSDLKKHTYIEFIEKYLGKDIGKVTGYLYWLSWLILAMAETTALGIYFKSW LPNLPAWLPGVLSVAVLLLINLISARFFGNLEFAFAIIKILMIVGFVIFAAFMLLSSGST KYGQASFSNLYADGFFNNGAGGFLQGFQMVIFSFIGVELIGLTAAEAKDPHKTIRSAINE LPLRIILFYVLAIIGILVILPWNKVSTFSSPFVQALMGAGFKGAGNLINFVVITAAISAT NSFLYSAGRLLFSVTLGGESKWSKFFGQLNHRQLPMRGLVLSALIIICAPLITMIMGDEA FSFISSMATSMFLLIWIIMTLTHLRYRQVTPKDQLHEFQLPAYPYLDYLLLAFFGAIVIL LLFLESYRVPMITALITFAVLYGFSKAFNKKKEAAK >gi|300497203|gb|AEAT01000042.1| GENE 8 7747 - 8589 1089 280 aa, chain + ## HITS:1 COG:DR1361 KEGG:ns NR:ns ## COG: DR1361 COG0791 # Protein_GI_number: 15806378 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Deinococcus radiodurans # 15 236 78 271 312 75 29.0 2e-13 MYGLINQPAVFMTEDDLKSRSDELLYGWAVKATGKKEDFWYVTSHYGYKGYVPKAAVTPV SLEEIKAREVKLIRRPVIDVLAEPKVSGDILLTVYKGSLLNVTDELVDGYYKVKLLDGRS GWVSKTALAKRLDEDDVLWSADPEYFLLQAKPDEESFRKQVTETAKEYLGCQYRWAGKSP LGIDCSGLVFMSYMLNGVLLWRDAEIKEAWPVHEIEFEDLRPGDLIYFPGHIAMYLGHGK YINSTGYKEHFGVAISSLRKEDPDYRADLFQMIEKCGSLF >gi|300497203|gb|AEAT01000042.1| GENE 9 8782 - 9771 1631 329 aa, chain - ## HITS:1 COG:lin2620 KEGG:ns NR:ns ## COG: lin2620 COG1087 # Protein_GI_number: 16801682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Listeria innocua # 1 327 2 328 328 402 59.0 1e-112 MKILVVGGAGYIGSHAVRRLVADGNDVVVLDSLFTGHKEAIDPKAKFYQVDLLDKDAVAD VLKKEKIEAVMHFAAYSLVGESVKKPLKYYKNNVSGMISLLEAMEETGVKYLVFSSSAAT YGIPEKLPITEETPLNPINPYGETKMMMEKIMHWADKANGIKSIALRYFNVAGASLDGSI GEDHHPETHLIPNIMKAALAGGGDFTIFGDDYDTKDGTNVRDYVHVVDLIDAHVLALKHL METNQSDVFNLGTATGFSNLEILKAAIKVTGVDIPYTIGPRRGGDPDSLVADSSKARKVL GWSPKYENVDDIIASAWNWHQKYPNGFSK >gi|300497203|gb|AEAT01000042.1| GENE 10 9852 - 12992 3654 1046 aa, chain - ## HITS:1 COG:CAC2824_2 KEGG:ns NR:ns ## COG: CAC2824_2 COG1061 # Protein_GI_number: 15896079 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Clostridium acetobutylicum # 322 672 3 345 616 268 43.0 3e-71 MLKDGIYEQILNQEILDQLEKVDPKTRNYQLEQLNADDSRQLLTIYLSQVIRSGLHYLRD SFKSGEDKAALIAQIRLANSIVDQVALHTGEADYEDLQILEQGEVLTSIYHKLTQSQKIT PIRPQTSIVENALFTGSKNEPSMLSEIKKEISSSDQVDLLVSFIKWSAIRPLLGDLEAFC QKASHQLRVIATTYTQATDYKAILTLSQLPNTTVKINYETDHARLHAKSYLFKRETGFST AYIGSSNLSSAALTTGLEWNVKVTEQESFDIVNKFAVSFESYWNDPSFETFDPDQEDCRK KLQTELNRHKANTFHLETSIRPYNYQQEILDRLQAEREVYGHYKNLLVAATGVGKTVIAA FDFKRYLAEHPHARLLFVAHRQEILEQSLQKFREVLNDFNFGHLLVGQYKTDDVSQLFVS IQSFNSEKMADLLPSDYYDFIIIDEFHHAAAKSYQKLLSHFKPKILLGLTATPDRMDGQD ILQYFDGNIAAEMLLGEAIDRQLLCPFQYFGVTDNVDYSGMKWSRGQYEVSELENVYTAN DARAKLILRSLDKYSNNLEDIKGLGFCVSVKHAEFMAAAFNQAGIPSAALSGQTAQADRQ QAKEDLTSGKLKFIFVVDLYNEGVDIPAVNTILFLRPTQSPTIFLQQLGRGLRLSPGKDC LTVLDFIGQANRHYNYEAKFKALTGPGHALPYEIRDGFPHLPAACYLELEPVAKKYILAN LGQNAANKNGLTQRVKTFSEDTGLELNLANFLKAYGMSLYDFYHASGSRSLFRLKKWAGL ITDDRDVENQVYQKFSSFFHIDSKRLLDYWLAYLKMPKETSNETERLMLGMLYYSFYKKK PAQLGFKDLHEGIKDFLKGDFVKEELMDVLRYQLSQLTVLPEANEYPFTCPLEVHCHYNV NQIMAAFDYFNQGQSPEFREGVKYFADKKTDIFLINLNKSEKDFSPSTMYEDYAINAQLF HWQSQSQDRPASPKIQRYIHQGETGNLISLFVREFKKQGNYTAAYTFLGNADYVSSAGER PVSFVWHLHQAIPASLLAKANKAIAL >gi|300497203|gb|AEAT01000042.1| GENE 11 13134 - 13439 413 101 aa, chain + ## HITS:1 COG:no KEGG:LBUL_1662 NR:ns ## KEGG: LBUL_1662 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 101 1 101 101 164 98.0 1e-39 MKNYMQHLKERAISAYPPKTSRRWSICIAAAVIIGLLLSHFGQAKFGASLADFALLCGID LLGVTFAKHGVNIFLAYLLAAALYFAVSVLLTFYIMSSNNL >gi|300497203|gb|AEAT01000042.1| GENE 12 13484 - 13894 595 136 aa, chain - ## HITS:1 COG:BH1443 KEGG:ns NR:ns ## COG: BH1443 COG1396 # Protein_GI_number: 15614006 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 2 84 1 79 107 61 34.0 4e-10 MMLPSKLRDLRKKNGLSQKELAEKLMTTQAKVASWENGDSVPNISYIAKLAVLYDVSADY LLKDDKQEGHEPGEEMDRPNTKRLGRINSIYWTIVIAVYLLASIATGRWSTSWVLFILGS AIWLIGAGFHWINSTK >gi|300497203|gb|AEAT01000042.1| GENE 13 14003 - 15238 1954 411 aa, chain - ## HITS:1 COG:SP1587 KEGG:ns NR:ns ## COG: SP1587 COG0477 # Protein_GI_number: 15901429 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 402 1 401 408 430 63.0 1e-120 MKTNRYIVALAGVMLHLMIGSVYAWSVYTKPIAAQTGWSESSVAFAFSLAIFFLGMSAAF MGRLVEKFGPTLTGTVSAILYGSGIALTGLAVQSQQLWLLYASYGVIAGLGLGAGYVTPI STIIKWFPDRRGLATGLAIMGFGFAALLTSPIAQFLMSSVGLSNTFYILGAGYFLIMIVS AQFIKRPTAEDLANFKSEDKEAVSLTGGLQMTANQALKAKTFYLLWFMFFISITCGISLV SAASPMAQELTGMSAATAAVMVGIIGLFNGFGRLVWATLSDYIGRPLTYSLIFVVDMAMF VILIFTHSPFIFAVALSLLMSCYGAGFSVIPAYLGDVFGTKELGAIHGSILTAWAAAGMV GPLLLSFTHEVLKSYYVTLAAFIILAGLALCVSFLVQREFAKLTDLADKLD >gi|300497203|gb|AEAT01000042.1| GENE 14 15525 - 16814 2106 429 aa, chain + ## HITS:1 COG:TM1650 KEGG:ns NR:ns ## COG: TM1650 COG0366 # Protein_GI_number: 15644398 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Thermotoga maritima # 7 324 1 303 422 250 40.0 3e-66 MASDTKIDLRKQMIYSILVRNYSPEGNFEGVRKDLERIKDLGTDIIWLLPIQPSGKEKRK GSLGSPYAISDYRAINPEYGTMEDFKRLCDDVHAKGMKIIIDCVYNHTSPDSVLAKEHPD WFYHKKDGSFGNKVGDWSDVIDLDYSHKDLWKYQAETLVMWAKYVDGFRCDVAPMVPVDF WKYAREEVAKVRPGAIWLAESGAPDFIRFLRSKGAVGGSDFELYQAFDMTYDYDIYPDLR AALLGQKDLTDYLAGLNRQEGVYPENYVKAHFLENHDVVRAHGMIDDPAALRAMTAFIYF MKGAMLVYNGEEKGDAHHVTLFDKDPVDWNGDIDLTDLLKKMHEIKQLPIMAEGSYEAKE VRKGVLEAVHSLGEGEEEEQLIGLFNTTGKKQAIPTQLPEGIYKNLYDGSSVQVYEGVMR IGEITIIEK >gi|300497203|gb|AEAT01000042.1| GENE 15 17566 - 18093 736 175 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1668 NR:ns ## KEGG: LDBND_1668 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 175 1 175 175 314 96.0 1e-84 MTDYNNEYDNDYLEDLEIDPSEILDYSISEKLAGLCGEEKAAFWRSFYQQARQLHRLFIT STDLRENFDVDVIYNRRNQEAVYQAIPAGCKKEESCLLLQGVIDDYTFSEDDTLESRQSL FIPDNESTFVYELNTDDGLINLFALTYQQSSHALDALGFNLKHRQQIHHAGELDY >gi|300497203|gb|AEAT01000042.1| GENE 16 18110 - 18820 904 236 aa, chain + ## HITS:1 COG:lin2099 KEGG:ns NR:ns ## COG: lin2099 COG3527 # Protein_GI_number: 16801165 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Alpha-acetolactate decarboxylase # Organism: Listeria innocua # 1 236 4 239 239 172 39.0 7e-43 MRKDPKLFQHSTLAMLVAGLFDGTMSIEELLKHGDSGIGTCSGLDGEMVILDGIAYTIRR NGTVEALSGDVKTPFACVHFDPKSPGQKVSGFSLPELEAYLKGQGMGNIFYAVKLTGRFA KMKTRTVFKQEKPYPGLSEVADQQAVFEGENTTGTLIGYYAPDLYQGIASSGFHLHYLSA DHALGGHVLDFQLAEADLSLTPFSDFDLHLPTSNADFLQANFDLASLNDQIQQAEH >gi|300497203|gb|AEAT01000042.1| GENE 17 18835 - 19221 347 128 aa, chain + ## HITS:1 COG:CAC1011 KEGG:ns NR:ns ## COG: CAC1011 COG3339 # Protein_GI_number: 15894298 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 12 114 21 123 138 102 47.0 1e-22 MKKKLQALAARVKVELPALFLALKDRRTSWLAKLLAFLTVAYALSPVDLIPDFIPVIGYL DDLLILPLLAALTIKLIPADVWQDCLEKSQGMWESGKPKKWYYALPIIIFWLLILFWIGK MVYQGMHN >gi|300497203|gb|AEAT01000042.1| GENE 18 19719 - 21617 2261 632 aa, chain + ## HITS:1 COG:SP1121 KEGG:ns NR:ns ## COG: SP1121 COG0296 # Protein_GI_number: 15900988 # Func_class: G Carbohydrate transport and metabolism # Function: 1,4-alpha-glucan branching enzyme # Organism: Streptococcus pneumoniae TIGR4 # 6 627 5 623 642 697 54.0 0 MDELDQHLQNFAAGNELYLQNYLGCHAAGNSYAFRVWAPKAQQVWLVGDFNNWEKDLPMQ QNAYGIWSIETDRAQPGQLYKFLVKQADGEEVMKFDPMALEYERRPGNAAVVSNLPEKRW TDGAWLGWHKRSNHFARPINIYEVHASSWKQHEDDSLYTLRDLQKELIPYVKEQGFNYIE FMPLTAHPLDASWGYQTTGYFALERAYGEPRDLQDFVEACHKENIGVLADWVPGHFCINS DALAYYDGTPCYEFEEGWRAQNKGWGALNFDLGKPQVQSFLLSSALFWLEYYHLDGLRVD AVSNMLYRDYDRGPGEWKPDQYGGNRNIEGIEFLHKFNKTIKEMHPERILIAEESSSQVK ITGRIEDGGLGFDYKWNMGWMNDELRFYSMDPYFRKDNFDLSTFSFMYRMSENFILPLSH DEVVHGKRSLMNKMFGDRLDQFAQLRNLNTMLMTYPGKKLLFMGGEFGQYLEWRYQEGLE WSSLSDELNAKMLKYNRELNHFYLNEPALWQLEQEDKSVKIIDADNRDQSVLSFIRQGKV RHDFLIVLLNFTPVQRDGFKVGVPYPGTYKEVLNSSRSEFGGDWTAKPQEMATTQEKFKD FDYQISVDLPGFSAMIIKPDQVTIKRKRSKKR >gi|300497203|gb|AEAT01000042.1| GENE 19 21665 - 22813 1873 382 aa, chain + ## HITS:1 COG:SP1122 KEGG:ns NR:ns ## COG: SP1122 COG0448 # Protein_GI_number: 15900989 # Func_class: G Carbohydrate transport and metabolism # Function: ADP-glucose pyrophosphorylase # Organism: Streptococcus pneumoniae TIGR4 # 1 381 1 380 380 510 64.0 1e-144 MSTKMLGLILAGGKGTRLGKLTANQAKPAVPFGGRYRIIDFPLSNCANSGVRNVGIITQY EPLRLNNHIGNGSNWGLDGLNSSATILQPYTDNAGSKWFEGTAHAIYQNIDYIDSQDPEY VLILSGDHIYKMDYADMLEEHEKNHASLTVAVIDVPWEEAPRFGIMNTDSSSRIIEFEEK PAEPKSNHASMGIYIFNWKRLREVLTAGFATADDMVDFGKNVIPYYLKSDERVFAYQFSG YWKDVGTIDSLWQANMEFLDGSDGLALDDRSWRIYSKNTIDAPQMITENAEVTDSMIVDG CYIDGKIKHSIISANVDVQRGSEIVDSIIMPGAKIGKNVKITKAIVGEGAVIGSDSVVGE ENGEIAVVGNKEKIGVLPNENK >gi|300497203|gb|AEAT01000042.1| GENE 20 22800 - 23942 1822 380 aa, chain + ## HITS:1 COG:SP1123 KEGG:ns NR:ns ## COG: SP1123 COG0448 # Protein_GI_number: 15900990 # Func_class: G Carbohydrate transport and metabolism # Function: ADP-glucose pyrophosphorylase # Organism: Streptococcus pneumoniae TIGR4 # 1 376 1 376 379 274 38.0 2e-73 MKTSKMCAIFSNQHEYSRLKPLTDERALSTLYFAGKYRLMDFALSSIVNADINHVYTLIS QEKVRSYLDHLGGGKEWGLDTIGSYEYLDFYQNLMRRRSRGENYFDDLIFFLKTCKMPYT VFIGNKMAANFDLKAILHFHQSNDNRITPVFKRVEKDNLAPDDHTFVLSDNNVVTEQREA IELTSEGPFNLSANVYVMNTDWLIHELEKAQKSGASYDVSERLAALAVKEKANAYEYTGY LRNIHDIPSYYQANLDMLEKDKRDSLLYGNQKIITRIRNEVGTYYDKESDVKNTLISTGC TVKGEIKNSIVSRRVNFAKDSVAKNAVIMANCKIKSGADVEYAILDKNVVIEKGVTVKGK PDSPVVIKKGSVISKDFVLD >gi|300497203|gb|AEAT01000042.1| GENE 21 23958 - 25388 2138 476 aa, chain + ## HITS:1 COG:SP1124 KEGG:ns NR:ns ## COG: SP1124 COG0297 # Protein_GI_number: 15900991 # Func_class: G Carbohydrate transport and metabolism # Function: Glycogen synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 475 1 476 477 507 51.0 1e-143 MRVLFVGAECAPFFKTGGLGDVLGSLPNQLAKDGDEVGVALPLYQDMPEEYREKLEYQGN FYVPVGWRNQYCGVFTLEMNGVKYFFIDNEYYFKRPGIYGYYDDGERYAFFQQAVIMMME RFDFVPNILHCNDYHTSFIPFLLREKWGFVDAYRGIKTVLTIHNLEFQGKYDVKTLPNFF GLGYEWFDNGTVRFNNDVNWMKTGILYADRVTTVSPSYAEEIQTPEFGQGLDEILRSVNF KLVGILNGIDFAKYNPATDPVIKVRYDVNHLKHKRRDKTDLQKQVGLPVAPTTPVIGMVS RLTAQKGCQLLLEELDNILQFDLQVVILGSGDQYYEHALSDIASRYPDKFKLILAFDVNL AQKIYAGADAFLMPSAFEPCGLSQLISLRYGTLPIVHQIGGLADTVWVYDKTKNEGTGFG FREFSGYQMVEAIMKMLELYHEKGKWAKAQRTAMRSDFSWKNSASKYQWMYGELLG >gi|300497203|gb|AEAT01000042.1| GENE 22 25413 - 27863 3782 816 aa, chain + ## HITS:1 COG:L99884 KEGG:ns NR:ns ## COG: L99884 COG0058 # Protein_GI_number: 15672682 # Func_class: G Carbohydrate transport and metabolism # Function: Glucan phosphorylase # Organism: Lactococcus lactis # 15 806 2 795 800 891 56.0 0 MKSSKVSAVNSNLREITPEEFKERLASKLDRHFEESVEEASKEDIFAALASMVRDGYSSK WRRTRIAESANGHKQAYYFSIEFLPGTLLRSNLLNLGWLDTAKEALADLGIDLDEIAAVE PDMALGNGGLGRLAAAFMDSLASTGYAGNGNGLRYKYGLFKQKFVNGYQKELPNDWLKQG DYWEVRRESKSVLVKFGGRVNMVDDNGWLTPQYEGATVVRAVPYDVAMVGYHNGVANTLR LWDAEIAPEDELKYPSIADRRKVEDLTSILYPDDSSYDGRLLRLKQEYFFVSAGLQSILN NFIRDYGEDSLTDLPKYVAVHINDTHPAMCVAEMMRLLVDRYRMDWDEAWEVTKQVMSYT NHTIMAEAMEKWDVGMFSQLLPRLFDIIKEIDRRYVADLEGKVSGDVIERTRIVKNGQVH MAHLAIIGSHSVNGVAALHTQLLETEVLRDFYQLYPDRFNNKTNGITLRRWIQIANPDLA KLLDKTIGTDWRFDSKEMLKFEKFYHDTATLTSLQKIKLANKEKLAKVIKDKTGIVVDPE AIFDVQVKRLHAYKRQTLKLLHVLKLYQDLKAGIDHPKRVVIFGAIAAPSYVFAKQVIKV INSVADLVNNDPDIKGRLKVVFLENYNVSLAEQIIPAADLSEQISTTTKEASGTSNMKLM ANGALTVATMDGANIEIKDAVGSDNIFAFGLDKDEVYNYYANHSYHPRDLYESDPVMKKT VDALIDGTIPGCVSEGRALYDDFLKDNEEFLVLADFEAYLKAQKLVEKVWANKRQWAQMS LVNIAHSERFDADKTIERYASEIWHLDKVEVDAGKA >gi|300497203|gb|AEAT01000042.1| GENE 23 27873 - 29675 2174 600 aa, chain + ## HITS:1 COG:L102412 KEGG:ns NR:ns ## COG: L102412 COG0366 # Protein_GI_number: 15672683 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 5 559 4 566 600 461 43.0 1e-129 MRAIFNSWDTKYKQPFGATQANTSVKWAVEVDEEIQEITLWLTKNNESPVAYPMTFNDES KMYETSVKISSSGLYYYYFNIKQNDQFYFLERSQDGFGDGEITQDGRDIRTFQLTCYDRT VPQAPWYTQGVVYQIFPDRFNNGNPHGEIQGRKKDSFIYATKEDSPYYIKDGHGDIARWD FFGGNLEGIRQKIPYLKDLGVTAIYLNPIFQASSNHRYDTQDFMKIDPMLGTEEDFKNLI KDLHKNRIALILDGVFNHVGADSKYFLSAVTDKTGPYYSWFNFINYPTKYQSWWGVTTLP EVNKNNADYQNFICGPDGVLAKWTRMHVDGWRLDVADELPMPLLREIRERLQNEDCHVLI GEVWEDASHKFVNSEFRTYMAGDNLTGTMNYPVRNFIVSLLQANNETEEVAALNDLEKLV ENYPKAFLENCLNNIGTHDTARIKTVLGGDEQLVALTFGLLFSIPGVPCIYYGDEAGLEG DKDPDNRRYFPWGKESDFLEKEVKELAHWRRENRALVDGKVGYVKIAYGINALVRYNQRE LVIYCYNKTDQDMILDAGEFQPYCLPEKIGELVSDILDQESVAQKAYLLKTFKLDRNEKE >gi|300497203|gb|AEAT01000042.1| GENE 24 29709 - 31430 2741 573 aa, chain + ## HITS:1 COG:SPy1224 KEGG:ns NR:ns ## COG: SPy1224 COG1109 # Protein_GI_number: 15675188 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 1 560 1 561 572 499 46.0 1e-141 MDAKEIFEQWKQAALPEDLAEQMAELGGDEKWIEDAFGQDINFGTAGMRGLLEPGTNRIN VFTVGRVTEGLARLIDENGEEAKKRGVVISFDSRYNSRELATHAARVLGAHGIHVYLFDD LRPTPELSFAVRYLHTFAGINITASHNAKQYNGYKAYGEDGAQMGPENADRLFVYAQKVE DIFSVKAAPVKKLRAEGTLQLIGEDVDEAYLAKLETVNVNKDMIKENADKLKIVYTPLHG TGKMLYDRAFRRGGFINVVPVPSQAIVDPEFPTCKKPNPEFRDVFNPGVELANEIGADMI VATDPDADRMGACVRTDKGDFQVLTGNQIATLMSYYLLQNLKDLGKLTPDYEIVTSIVSS ALPFKIAKDFGIKTKSVLTGFKYIGEEVDRMNREGDGKFLMGFEESYGYLFQAFARDKDA MQGALMFAEVASYYASKGMTVFDGLQEIWKKYGVAYEITRAIEMPGIGGQKKMAELMSKL REEHLSEINGAKVLKIEDYQEQVTVENGEETPLTGFPKSNVLKYFLDDETWVALRPSGTE PVIKAYVGVNKADIATAEKAAESYQDAISELLK >gi|300497203|gb|AEAT01000042.1| GENE 25 31660 - 32889 556 409 aa, chain - ## HITS:1 COG:MA1161 KEGG:ns NR:ns ## COG: MA1161 COG0477 # Protein_GI_number: 20090027 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Methanosarcina acetivorans str.C2A # 17 378 21 370 443 75 22.0 2e-13 MQKSKKQLILAISSLGIGNLTSATFSFCLGVYVLQKTSSSMLFSMLLLIRPLSNLLLSSL IGFCVDKYDHKKICMIAQATSVVAVILFIALFREQLSLSERLLIIVASSIVLTVCDTFQS TSYKASTNSMVAAEHRQKLVAYEQLTDAGAVILAPILGGLLAGVVAISNIALLELAGESV VLLAIALLDFHLISVEVEAISDSLILSIKNGLEYFKNDRYLMELLLFAVIANFALSGLEV SLPIAMMKELGIPANLYGLADSFCAGGMLLVSLLLGSFKMPKNYLLTTGRIGIILAGDFI ILALACLCPNKLLATGIFSICMLVVGACLAAVNLPYAMYVRTKVPVNLQGRVGATTSSVV AVLSPLGYALFGLVLGQVKPVWCLMMCAIIIFADGLRLLLSTSRVNSST >gi|300497203|gb|AEAT01000042.1| GENE 26 32909 - 33190 170 93 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLSKHLREIEKSASNILSENWRFFYNFNNKKYPLSKEKVIGELLVYLIISNNQNLYKRIF SEGYNLKRCFQRLQKMEKASPNRYNNINEKSYI >gi|300497203|gb|AEAT01000042.1| GENE 27 33193 - 33345 81 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSLTIKKISSSDVCDRLTIESAAYGKYFAMIEWIVTDDSDESYMPGCSLL >gi|300497203|gb|AEAT01000042.1| GENE 28 33489 - 34334 388 281 aa, chain + ## HITS:1 COG:no KEGG:LDBND_2022 NR:ns ## KEGG: LDBND_2022 # Name: not_defined # Def: transcriptional regulator # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 52 280 1 229 230 390 92.0 1e-107 MTAINFKQIRQMQGLNLKEAASGICSIQMLSRWENGTGNMDFEKTLKLLERVNITSSEYV HLANLDDTYQLSAELQKAWKQKDHTLIKRIARNSLQEFHLTSDILSLNYGAIACGLYHRL AKVNLLEIDEQNAFNKELSMITVWGQENISLFFNTIQVLSPKMIFQISAQLIENLDFAKQ AGSDTFYFATTTLFEAVIALLISDNPSYAANILRQLNHFDFPQRETMLIIGRKFLNSLID WQEPQNEQSILKIINFLLDMGLTMQAKNFLQVYKAVRKVKK >gi|300497203|gb|AEAT01000042.1| GENE 29 34400 - 35479 2040 359 aa, chain - ## HITS:1 COG:Cgl1221 KEGG:ns NR:ns ## COG: Cgl1221 COG0205 # Protein_GI_number: 19552471 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Corynebacterium glutamicum # 3 339 4 333 346 237 38.0 3e-62 MTLRVGILTSGGDCQALNATMRGLAKTLYNCVDDVEIIGFKRGYYGLMHEDYVKMKPRDF SGIINEGGTILGTSRQPFKEMRVIVDGFDKVAAMKKTYKKLNLDALAVLGGNGSLKSANM LAQEGLNVIGLPKTIDNDTWGTDYTFGFQSAIDIATRYLDDIHTTAQSHSRVFVVEVMGH KVGHITLAAGLAAGSDIILLPEIPYDINVVAKKVKERQKSGKGFTVIAAAEGAISKEDAT LSKKKYKAKVAARNGASVVNEIAAQLQEVLPDAEIRTAVIGHAQRGGRPDAYDRQISTRF GIEGARLIMNRSFGRLVVLKHSEVDSIALEDTAGKLKYVDPNGKTVSNARLMGVTFGDK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:16:34 2011 Seq name: gi|300497186|gb|AEAT01000043.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00020, whole genome shotgun sequence Length of sequence - 14148 bp Number of predicted genes - 16, with homology - 16 Number of transcription units - 11, operones - 5 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 17 - 76 5.8 1 1 Tu 1 . + CDS 116 - 394 453 ## Ldb0573 hypothetical protein + Term 400 - 439 6.4 + Prom 516 - 575 8.7 2 2 Op 1 . + CDS 685 - 2322 2746 ## COG2132 Putative multicopper oxidases 3 2 Op 2 . + CDS 2344 - 2532 264 ## LDBND_0508 hypothetical protein + Term 2553 - 2599 10.4 - Term 2549 - 2578 2.1 4 3 Op 1 . - CDS 2633 - 4204 2379 ## COG4108 Peptide chain release factor RF-3 5 3 Op 2 . - CDS 4204 - 5067 1151 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 5099 - 5158 7.8 + Prom 5039 - 5098 7.0 6 4 Tu 1 . + CDS 5168 - 5635 919 ## LDBND_0505 hypothetical protein + Term 5640 - 5684 7.3 7 5 Op 1 . - CDS 5632 - 6108 776 ## Ldb0563 hypothetical protein 8 5 Op 2 . - CDS 6130 - 6945 1298 ## COG2137 Uncharacterized protein conserved in bacteria - Prom 7031 - 7090 8.6 + Prom 6990 - 7049 6.3 9 6 Tu 1 . + CDS 7106 - 8488 2282 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase + Term 8520 - 8556 8.2 10 7 Tu 1 . - CDS 8868 - 9836 1178 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 9893 - 9952 11.4 + Prom 9774 - 9833 5.8 11 8 Tu 1 . + CDS 9951 - 10232 486 ## LDBND_0500 hypothetical protein + Term 10245 - 10299 11.2 - Term 10236 - 10282 6.7 12 9 Tu 1 . - CDS 10293 - 11207 1616 ## COG1210 UDP-glucose pyrophosphorylase - Prom 11261 - 11320 5.0 - Term 11267 - 11323 -0.7 13 10 Op 1 2/0.333 - CDS 11330 - 12244 1099 ## COG1295 Predicted membrane protein 14 10 Op 2 . - CDS 12247 - 13038 1272 ## COG0024 Methionine aminopeptidase - Prom 13106 - 13165 3.8 + Prom 13136 - 13195 6.4 15 11 Op 1 . + CDS 13221 - 13667 663 ## COG0716 Flavodoxins 16 11 Op 2 . + CDS 13660 - 14139 855 ## LDBND_0495 conserved membrane protein, gtca family Predicted protein(s) >gi|300497186|gb|AEAT01000043.1| GENE 1 116 - 394 453 92 aa, chain + ## HITS:1 COG:no KEGG:Ldb0573 NR:ns ## KEGG: Ldb0573 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 92 1 92 92 145 98.0 4e-34 MHLIDVTNSYAELVHSQLNTTSVNYVKVYSLGNTTVVYTESPIAIGIVLENHHRKIREEE LEFVIKRLIPDQTSYQLTVDKHRRVVEIHVDK >gi|300497186|gb|AEAT01000043.1| GENE 2 685 - 2322 2746 545 aa, chain + ## HITS:1 COG:Cgl0921 KEGG:ns NR:ns ## COG: Cgl0921 COG2132 # Protein_GI_number: 19552171 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Corynebacterium glutamicum # 29 465 40 491 513 250 36.0 5e-66 MTVYPDYFYFEKDFDKSHMGYKPLTIPAGVEAQPLAVPPLLAPDKVDGNDIYYTIEAQEG ESQILPGKKTKTWGYNAPLLGQTLVVKTGQRVHVRLKNSLPVLTSFHWHGMEVPGPITDG GCHAPVYPGEEKDIEFTVKQPAALTWLHAHPCPSTAMQVWMGLAMGVVVTDDNEARLPIP KNYGVDEFPIILQDRTFHDNQLDYRADYDPMGVFGEVPLINGVVRPYVDVTTQKVRLLFL GGSDRREWRLHFENDLTMTQIGGDDSFLRHPIDVKKLLIGPGERQQVIVDFAGYKEGDVV SLYTDDFKLVEFRIHAFEKDDRELPFNIFTPDDPAVNSEAPVRHVTMDDHDKINGLRFSM ERIDMKQTLNSVEYWDVTNTNNSASGMLHPFHIHGAHFLVVSRNGQKPNPNEINVYKDTI EVGPGETVRLKVYFQNAGVFMYHCHIIEHEDAGMMAQIQIVDPKDPDKTYKLMDMETITN AFAEEMGVEPGEVFMPGMDVEDMDMGACFHAAEASTSRRLVEAVTAASRAGHEGHHDATS GASHH >gi|300497186|gb|AEAT01000043.1| GENE 3 2344 - 2532 264 62 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0508 NR:ns ## KEGG: LDBND_0508 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 62 1 62 62 89 100.0 5e-17 MMNNNLYLKILWVLLYGIVAFYTFTDKTMMAMYWMAGVMFAQAVLDLVYYFLPKSKTEMT EC >gi|300497186|gb|AEAT01000043.1| GENE 4 2633 - 4204 2379 523 aa, chain - ## HITS:1 COG:L0369 KEGG:ns NR:ns ## COG: L0369 COG4108 # Protein_GI_number: 15672331 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Lactococcus lactis # 5 523 3 521 523 714 67.0 0 MNKELLDKVNKRRTFAIISHPDAGKTTITEQMLLLGGVIRSAGTVKARKTGNYATSDWME IEKKRGISVTSSVMQFEYQGKRINILDTPGHQDFSEDTYRTLMAVDAAVMVIDSARGIEP QTKKLFKVVRQRGIPVFTFMNKLDRDGREPLDLVAELEEVLGIEGVTMNWPIGMGQSLLG LYDLANQRVELYHPEEGQDRFIALADGKAPAGSPLADDPQFEETLGEIELLEGAGASFDR AKVLAGQQTPVFFGSALTNFGVETFLEQFVDLAPAPGEHEVNGDEELKPDDDEFSGFIFK IQANMNPQHRDRIAFVRVCSGEFSKGLDVTLARTGKQVRLNNAVEFESSARVQVSEAVAG DIVGLYDTGNFQIGDSIYAGKRKLEFPPLPEFTPELFMRVSPKNVMKQKSFHKGMNQLVQ EGAVQLYRNYQTDDYILGAVGQLQFEVFQYRMKNEYNSEVEMTSIGHRVARWINPDQLDP KMSSSRNLLVKDRFGNPLFLFENAFAERWFHDKYPDVELTEKL >gi|300497186|gb|AEAT01000043.1| GENE 5 4204 - 5067 1151 287 aa, chain - ## HITS:1 COG:SPy0378 KEGG:ns NR:ns ## COG: SPy0378 COG1253 # Protein_GI_number: 15674525 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Streptococcus pyogenes M1 GAS # 20 287 177 443 444 225 45.0 7e-59 MTSDPATGSLFGKLRSRFSSNEESGKDQLQAEIDQLHAGNVLTDTEYSMIEGSMAFHDKV AREVMVPRTDAFMIDIEDDLEENLDDILRQPYSRIPVYRQDKDQIVGVIHIRTILREARQ HGFDQLTYDRLISPPLFAPETIELDNLLVQMQTSQQQLAILTDEYGGVTGLASIEDLLEE IVGDIDDEVDKAEVLVRQLNDRQFVIYGKMPLTDFNDRFGTDLEMEDVDTLAGYMITKLG VIPGRGEQLEVPLDNGMVLTTKRMRGSRLLTVLLTLPEENYEEETEE >gi|300497186|gb|AEAT01000043.1| GENE 6 5168 - 5635 919 155 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0505 NR:ns ## KEGG: LDBND_0505 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 155 1 155 155 251 100.0 5e-66 MKMRRIMLVFVFLLLIPYICSLAIIGIGFNALVLHSTDPFRTAVGAFVGAIIMLAVKATI QRPLNLLAGDIYDSFLQQILRFFSIRRRPLLQVANFILDFVLCTLATIVIRLLLPLEWIV GTSMGFVILVMFISTCLGAYIEYDNLSIDAEIKQS >gi|300497186|gb|AEAT01000043.1| GENE 7 5632 - 6108 776 158 aa, chain - ## HITS:1 COG:no KEGG:Ldb0563 NR:ns ## KEGG: Ldb0563 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 158 1 158 158 295 100.0 3e-79 MQTEINELTFIGKAFPDRMMDANGTFAAANQELEADPAFQAFVKEAGLAGQRASLIVFGP ENFMYWYGVIAPKDSEVSGLLKFSLPSARVFQKEETANAAYFDLPLNFELPRFLDEAGDL GSDFQAQLEENPNPYILRQLDLGSKKLTKSLYLPVSQN >gi|300497186|gb|AEAT01000043.1| GENE 8 6130 - 6945 1298 271 aa, chain - ## HITS:1 COG:BS_yfhG KEGG:ns NR:ns ## COG: BS_yfhG COG2137 # Protein_GI_number: 16077919 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 261 1 262 264 125 34.0 6e-29 MAIITKVSAQKRQGRYNIFLDQEYAFSVSEKTLAEFVLLKGQELSPQKINEILDYEASAK ASDLAARYLSYQPRTVKEVTDYLSQHEISRSAAKRAVNELTQLGYLEDAAYARLFVKNNL QVGKNGPGAVRRDLKKKGVDDDLIEAALADVTDEEWAGVGKRLVKSLLGQQGKIAKREVD RKMQTKLLSHGFSGSLAQAVTQDLVPEADEDQERAALAKQGLKAYKRFKRYEPGVREQKM RQYLYSHGFSGDEISAFLAGEIIPLEELEEY >gi|300497186|gb|AEAT01000043.1| GENE 9 7106 - 8488 2282 460 aa, chain + ## HITS:1 COG:SP1901 KEGG:ns NR:ns ## COG: SP1901 COG2265 # Protein_GI_number: 15901728 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 23 456 1 432 436 336 41.0 6e-92 MQKKHFSKNASKERHVIITIKRLGINGEGIGYYKRKIIFIPGALPDEVVVAKIVKDHPQY LEGELVRIKEASQDRVPFPSGVDPRIGGLELAQLSYAGQLKFKKDNLVSALEKYHPRGYK NYKIKNTIPAPDQWHYRAKAQYQIERENHHVSLGLYAPNSHQLIDLPEMPTQSEDTQATE RAIRDLIIKLRVPIANRRRNLPGVKTIVVRQAEASQEMQVTLITVGHKLDNLLQLADKIM RLPKVVSVYQNETDWQNPQVWGNKTSKLRGKNQITEEIMGKKFDLSPRSFFQLNPVQTAT LYSEALKLLSLTPDMTLIDAYSGVGTLGILAADQVKQVVGIESIPEAVLDAQHNVEINHV RNAEYLQGSVEKLLPRLKEDGLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPS TLAQDLVLLGEAYDVRVIENVDMLPQTPRCECIAKLTLRK >gi|300497186|gb|AEAT01000043.1| GENE 10 8868 - 9836 1178 322 aa, chain - ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 12 322 5 308 308 277 46.0 2e-74 MKKKNKKRSNYRLVKILGGLLAVLALALAGAGYYFFNMAVVPGKKSFVTNGTVQLTKSTP QYKQKLWYKQVTKQHWQLRSAKNNYLLRANYIPAKNSAKTVIILHGYMSNKENMGAYAQL FHSLGYNTLLPDAEAHGQSQGKYVGYGWLEKNDVKKWAEQVIKKNGQKSKIVIFGVSMGG ATTMMTSGLNLPKQVKCFIEDCGYTSAKNEIEREAQALYNMPAFPRFPLVEILSGITKLK AGYFLAQASSLAQLKKNTRPMLFIHGSKDTFVPTKMVYKNYRASRGPKQLLIVKGAQHAK SYEHNPALYARAVKKFLAKYAK >gi|300497186|gb|AEAT01000043.1| GENE 11 9951 - 10232 486 93 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0500 NR:ns ## KEGG: LDBND_0500 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 93 1 93 93 168 95.0 7e-41 MLLEDFLQLLADLGGQNVLYLQVQDQTLPISKFVLAREDCQLLCGGQAMTLAKFRQLTGK GSKSIPLSFCWQEKEIPVYGVQILPAEGKIICK >gi|300497186|gb|AEAT01000043.1| GENE 12 10293 - 11207 1616 304 aa, chain - ## HITS:1 COG:L177590 KEGG:ns NR:ns ## COG: L177590 COG1210 # Protein_GI_number: 15673321 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Lactococcus lactis # 2 299 12 308 313 399 70.0 1e-111 MKVRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQFIVEEAMDSGIEDILIVTGKSK RSIEDHFDSNTELEDNLTEKHKDGLLKLVRETTMSNTKVNLYFTRQPHPNGLGDAVNRAR SFIAGEPFVVMLGDDLMRDKTPLTKQLIDCYDETHASTIAVMKVPHEEVNKYGVIDPIGE TAPDMYNVKAFVEKPDVDKAPSDLAIIGRYLLTPEIFDMLDKQKAGAGGEIQLTDAIDAL NKTQRVFAHEFKGQRFDVGNKEGYMETSIQYGLRHPETKDALRKYIIDLGKKLESEGKKK PAGK >gi|300497186|gb|AEAT01000043.1| GENE 13 11330 - 12244 1099 304 aa, chain - ## HITS:1 COG:lin1818 KEGG:ns NR:ns ## COG: lin1818 COG1295 # Protein_GI_number: 16800885 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 9 279 11 276 289 130 30.0 2e-30 MAEKVEPGQKGVRRFLTTLSSVVSQGEIFQSSIVIAYYILFSIFPIVIIVGNALPWFHLA TGPIADYLEMIFPSDVARYIIPIVDTLLKSNSTSYISFGAIMALWSMSCMVNAVRIGMNR LYGVHNKELKLGFWHFIWNRTLTMIFSALMVTMFILLALVVVFGQEVLHFLAPYFNLPLA WIDKLSSYRWLVLLVLMLIGVYYLNAVAPNVHFKKALLPGSIVTVAGWEALSYLFSFYLK NFPVKWENYGIVGTFIIFMLWLNLLAILLLFGTAVNVSLDQLRYGPATYSNGPLAEFIAK RRKK >gi|300497186|gb|AEAT01000043.1| GENE 14 12247 - 13038 1272 263 aa, chain - ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 249 13 252 252 258 53.0 1e-68 MQASGHLLATMFEALRDVIKPGISTWDIEEFCQEFVSSRGGRLSEQGFEGYKYGTCISVN DEIAHNIPRKNVFLKEGDLVKVDVTCNLNGYESDSCTTYGVGQISEEDQHLMDVTKKAMY MGIDQAVVGNRIGDIGAVIQHYVEDEEGYGDVRELIGHGIQPSIHEDPEVPHWGKAGHGL RLREGMTITVEPMVEAGGDWRILQKTVDDPNDDWVFYATPDGSKSAQFEHTFAITKDGPK ILTLQKPYDGLEKYIPHFDEMED >gi|300497186|gb|AEAT01000043.1| GENE 15 13221 - 13667 663 148 aa, chain + ## HITS:1 COG:SP1297 KEGG:ns NR:ns ## COG: SP1297 COG0716 # Protein_GI_number: 15901157 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pneumoniae TIGR4 # 3 146 4 146 147 112 46.0 2e-25 MRAKIVFASMTGNDEDMAEILEEGLLDQGLEVDSSDVSFTDASDYLDSDLCVFITYTYGE GAMTDEIADFYDQLKELDLTGKSFAVMGSGDKTYKEHYCENVFDFEKAFLACGAKELIPP LTVENAPDDDDIARIDQAAEELADKLNG >gi|300497186|gb|AEAT01000043.1| GENE 16 13660 - 14139 855 159 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0495 NR:ns ## KEGG: LDBND_0495 # Name: not_defined # Def: conserved membrane protein, gtca family # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 148 1 148 159 260 97.0 1e-68 MDKDFNRRRALGEQIFKRHRNLWVYMFFGFIAALINTVVFMFMHDFLHTVLVIDNTIAFI VSNLVSFWFNHKAVFTKNVDHEHKLWQKLLSFFAYRIISLLPDTLIMWLGMTVLGWPALI VKVIDQILVGIFNYLTTKSVFEKQEKSLKKRLEKKIKKQ Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:16:50 2011 Seq name: gi|300497184|gb|AEAT01000044.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00171, whole genome shotgun sequence Length of sequence - 1315 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 22 - 984 589 ## COG0675 Transposase and inactivated derivatives + Term 1046 - 1097 0.3 Predicted protein(s) >gi|300497184|gb|AEAT01000044.1| GENE 1 22 - 984 589 320 aa, chain + ## HITS:1 COG:TM1003 KEGG:ns NR:ns ## COG: TM1003 COG0675 # Protein_GI_number: 15643763 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Thermotoga maritima # 159 289 120 251 278 60 31.0 4e-09 MTAVSGKRKQLKLTGPFCYANKKKRGDVQLILDRDKKRLEVHRAIKAAVHDLHKSKKKKV GMDKGLATLLSCSSGHEYGFNFSQLVNAEAERINRRNTNRNEYIQAAKELRHELSALQAK LAIKHSAKTEWRLRNRIGSLERRISRLEERHLGSKLYHRQHARKQCNMERIMNMSIRKML LTEKPDVLVKEDLSFTKEKLPKAANRYEAKVRRKLSSWSKGTLDDRIEYLCDCLGIRTVD VNPAYTSQFCPNCGARFSERKGTHHELTVCPNCGEMNANTAAAVNILRRADDKNITLYTP YKKVEKILEDRYANKQSVMA Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:16:54 2011 Seq name: gi|300497176|gb|AEAT01000045.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00120, whole genome shotgun sequence Length of sequence - 10318 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 3, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 43 - 102 7.0 1 1 Tu 1 . + CDS 125 - 1699 1777 ## COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold + Term 1723 - 1758 3.1 - Term 1711 - 1745 2.1 2 2 Op 1 . - CDS 1778 - 2497 1018 ## COG3382 Uncharacterized conserved protein 3 2 Op 2 . - CDS 2573 - 3442 1253 ## LDBND_1722 rec (receiver) domain signal transduction protein - Prom 3493 - 3552 8.6 + Prom 3642 - 3701 5.8 4 3 Op 1 8/0.000 + CDS 3750 - 4751 1670 ## COG0078 Ornithine carbamoyltransferase 5 3 Op 2 2/0.000 + CDS 4770 - 5699 1150 ## COG0549 Carbamate kinase + Term 5772 - 5810 0.5 + Prom 5774 - 5833 3.2 6 3 Op 3 3/0.000 + CDS 5863 - 7086 928 ## PROTEIN SUPPORTED gi|149002994|ref|ZP_01827905.1| 50S ribosomal protein L33 + Term 7140 - 7178 -0.3 + Prom 7089 - 7148 3.1 7 3 Op 4 . + CDS 7187 - 8614 1960 ## COG0531 Amino acid transporters + Term 8639 - 8667 1.0 + TRNA 8773 - 8845 89.1 # Val TAC 0 0 + 5S_RRNA 8779 - 8830 92.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. + TRNA 8848 - 8920 86.5 # Lys TTT 0 0 + TRNA 8933 - 9014 62.8 # Leu TAG 0 0 + TRNA 9026 - 9098 85.0 # Thr TGT 0 0 + TRNA 9103 - 9174 79.2 # Gly GCC 0 0 + TRNA 9190 - 9275 64.4 # Leu TAA 0 0 + TRNA 9281 - 9354 69.7 # Arg ACG 0 0 + TRNA 9361 - 9434 86.5 # Pro TGG 0 0 + TRNA 9471 - 9544 73.7 # Met CAT 0 0 + TRNA 9557 - 9630 84.8 # Met CAT 0 0 + TRNA 9642 - 9715 76.8 # Met CAT 0 0 + TRNA 9733 - 9805 78.7 # Phe GAA 0 0 + TRNA 9820 - 9890 71.0 # Gly TCC 0 0 + TRNA 9894 - 9967 92.0 # Ile GAT 0 0 + TRNA 9970 - 10060 59.8 # Ser GCT 0 0 Predicted protein(s) >gi|300497176|gb|AEAT01000045.1| GENE 1 125 - 1699 1777 524 aa, chain + ## HITS:1 COG:FN0649 KEGG:ns NR:ns ## COG: FN0649 COG1574 # Protein_GI_number: 19703984 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase with the TIM-barrel fold # Organism: Fusobacterium nucleatum # 4 519 4 539 542 191 28.0 2e-48 MNCRTFVNGKIFTGENETAFTDSITVEDGKIVAIGEKGRGELIDLQGQTVLPGLIDNHTH PKYIADALHGAACTPPLVNSISEMQEALRHTPEYGQGPDVWIEGWGFDESKLAEHRSPTR DDLDQVSTTQPIFLYRSDCHSSVGNSRALELAGIDEHTPDPAGGKIEKDASGRPTGFMRE VAASQLLIRAKSALSYENDVANLVKSSSHYLENGLVAIGEMMGRLHPYATLSLYQDAYKQ GFKPKSAIYYVADEVAGPLEIEKSDRLRVAGLKVFMDGSISGETALMKDAFPSGKKGVAL TSEDRLREIIAYARENKLQVAVHAMGDAAIQRVIDVCQDLDPWLEGQPSVRIEHASLLSD SMLKELKGAKIGPAVSTQPIFFFAEEDSYRQFLSADQLKMAYRIKSLDKENILFSLSSDA PCTPWAEPDSPFYGIYAAVTRHTAAGGFINEDEGIPVVQAILAYTRDAAKMGGFVNNGTL TPGKDADFVILERDIFSQKAEDLAKVKPASTWIGGEKVWSQEKK >gi|300497176|gb|AEAT01000045.1| GENE 2 1778 - 2497 1018 239 aa, chain - ## HITS:1 COG:L36841 KEGG:ns NR:ns ## COG: L36841 COG3382 # Protein_GI_number: 15674160 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 2 239 1 235 235 204 44.0 8e-53 MLEKVTVDPSFWELFPDAQVNIMLVSGSDNHDTDDNLACRRKLLREGSDKAEDFLGAAAF AKNPVVAEWRQAYQQFKKKKGVRASIEALLKRIDKGEDLHPISPLVDVYNSVSLAHGVPI GIEDQDKLAGTMHLGQVHEGLPFQPVGADKDEPTLEGEVAWYDDQGAVCRCLNWRDAQRT MLDEDSTKGVIVIESVNADQAQRANEAMSDLEELLEEFFGIKPDKSVVLTKDAPSVDVD >gi|300497176|gb|AEAT01000045.1| GENE 3 2573 - 3442 1253 289 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1722 NR:ns ## KEGG: LDBND_1722 # Name: not_defined # Def: rec (receiver) domain signal transduction protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: Two-component system [PATH:lde02020] # 1 289 1 288 288 528 96.0 1e-148 MHFYITNKSTKNLQLISDALERNFENIIVGRSTDAQRTFDDLRQLRVDVLVVDYDLAPFD GLALLRRLKQANILPRVIMTANTPSESVITAAYQNGCDFFIHHQLNSEEIAHISKIISTT LQLLSNMRVISELSGSLNNPYGRQQTTHRQQIDHVTDTLRFLGIASEKGYDDIMKIIRLM VDKDMSFDQIDLEESFGISSREKKVIYQRIRRTLHIGIVNLATMCIDYPDNEMLLDYANN LFEYQNIHVEMQHQNSKELERGQISLQHFFDGLLQESYRVKRDSNNELW >gi|300497176|gb|AEAT01000045.1| GENE 4 3750 - 4751 1670 333 aa, chain + ## HITS:1 COG:SA1012 KEGG:ns NR:ns ## COG: SA1012 COG0078 # Protein_GI_number: 15926752 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Staphylococcus aureus N315 # 4 333 3 332 333 493 69.0 1e-139 MAFNLRNRSYLTLADFNTREMEYLLDLAEQLKKDKYAGVEQPRLKGKNIALIFEKDSTRT RCSFEVGAHDQGAHVTYLGPSGSHFGHKESVKDTARVLGGMFDGIEFRGFSQEAAETLAK YSGVPVWNGLTDADHPTQVLADFLTAKEVLKKEYKDIKFAFVGDGHDNVSNALMLGAAVM GMEYHVVTPPELNPSEETLAKANAIAKDTGAKIVVSNDIKEGVKGMDVIYGDVWVSMGES DDKWKKRIELLSPYQITMDVLKATENPNVIFEHCLPAFHNLETEVGREVYEKFGLKELEV TDEVFESKHSVVFREAENRMHTIKAVMVATLGD >gi|300497176|gb|AEAT01000045.1| GENE 5 4770 - 5699 1150 309 aa, chain + ## HITS:1 COG:SA1013 KEGG:ns NR:ns ## COG: SA1013 COG0549 # Protein_GI_number: 15926753 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Staphylococcus aureus N315 # 1 307 1 308 310 397 65.0 1e-110 MSKVVVALGGNALGKSPAEQLELVKNTASSLIGLISAGNEVVISHGNGPQVGQINLGMSY AAEHGQSAAFPFPECGAMSQGYIGYHLQQSLQNELRKRGMTKDVATIVTQIVVDPADTAF QNPTKPIGAFYTKEEANSIAEDKGYIFKEDAGRGWRQVVPSPTPKRIVELNSIKTLIEAN ELVIAGGGGGVPVVETEEGLRGVPAVIDKDRSSALLADNVGADKLIILTAVDYVAINFNK PDQKNLEDISVEEAKKYIDEGQFAAGSMLPKVQACMSFVEGHPEREAIITSLSGLDAALA GQLGTVIHA >gi|300497176|gb|AEAT01000045.1| GENE 6 5863 - 7086 928 407 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149002994|ref|ZP_01827905.1| 50S ribosomal protein L33 [Streptococcus pneumoniae SP14-BS69] # 4 407 5 409 409 362 48 1e-100 MTSPIHVTSEIGKLKTVMLHRPGREIENITPDSMERLLFDDIPYLPIAQEEHDFFAQTLR DNGAEVIYTEDLAAEALADEAVRNEFIERQVVEAGFVAGVTHDALVEYLKALTPAELVTR IYEGIRKDDLELTILDLAAVSENTEWPFLMDPLPNAYFTRDPQASIGDGMSVNKMTFPAR QRESMITEYILKYNARFAGKVKVWRDRNHASHIEGGDELVLSDHVVAIGISQRTTADAIQ DIAKSLFANSDYDTVIAISIPHNHAMMHLDTVFTMINYDQFTVHPDILTEDGKVDNWVLH PGKDGEVTFEHHTDIKEVLKKALGKSEIDLIPTGNGDPIVAPREQWNDGSNTLAIAPGEV VTYNRNYVSNALLREHGILVHEVRSSELSRGRGGPRCMSCPIVREDI >gi|300497176|gb|AEAT01000045.1| GENE 7 7187 - 8614 1960 475 aa, chain + ## HITS:1 COG:L94890 KEGG:ns NR:ns ## COG: L94890 COG0531 # Protein_GI_number: 15674017 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 6 464 5 476 490 333 42.0 4e-91 MEEKVNKKGIGLVGLTALIVSSSIGTGIFGITSSIAQSAAPGPAILSWLLVGFGFLMLVL SLNNLTEKRSDLKGGIFAYAGAGYGPLGEFISGWAYWMSAWLGNLAFATMLMSAIGTFIP VFKGGSNLPSIIVAIIFCWALTFLVNNGVESASFVNTIGTFCKVVPLIMFVIICIVSFKG GMFTADFWGRVANNLSKGTTTGGLWPQMKGTLMTLIWVFIGVEGASVMGSRAKSLKEAQQ ATMLGFVLLLVFYMMISILPYGLLTRAQLASAAQPALGSDLKMIVGDWGMMIINIGLIIS TIVSWLSWTMLPAETMLLIAEDGAAPKFWGKLNSKKAPTNALFTTAILQTIFLFSLLFTD KAYEFCYTLASSAILFSYMFVGLYQMKFSRERKEWTQWIYGLLAALFQFMCMILAGWQSV LVVSLSYIPGLIVYYQGVREQGRKLNKNEKITFIFIAILCVLSIVLIANKKINIM Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:17:00 2011 Seq name: gi|300497173|gb|AEAT01000046.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00254, whole genome shotgun sequence Length of sequence - 2183 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 457 745 ## LDBND_1487 pyruvate oxidase or other thiamine pyrophosphate-requiring enzym E + Term 474 - 519 13.9 + Prom 472 - 531 6.8 2 1 Op 2 . + CDS 556 - 1941 2171 ## COG0362 6-phosphogluconate dehydrogenase + Term 1955 - 2007 12.0 Predicted protein(s) >gi|300497173|gb|AEAT01000046.1| GENE 1 2 - 457 745 151 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1487 NR:ns ## KEGG: LDBND_1487 # Name: not_defined # Def: pyruvate oxidase or other thiamine pyrophosphate-requiring enzym E # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: Pyruvate metabolism [PATH:lde00620]; Metabolic pathways [PATH:lde01100] # 1 151 466 616 616 291 100.0 7e-78 TNETLGFIEAEQRDESNQPLSGVIIPDNDWAKVAEGMNMKAFTVHDKAEFQAAVEEWKKM DGPAFIDVKYTKHMAYSTELNTLDDPEFVKYYHAEALHPFSYFAEKFGLEIDAASGASGH SEDKAEALQVQATSSASTPETAPDTTSGASH >gi|300497173|gb|AEAT01000046.1| GENE 2 556 - 1941 2171 461 aa, chain + ## HITS:1 COG:YPO1541 KEGG:ns NR:ns ## COG: YPO1541 COG0362 # Protein_GI_number: 16121814 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Yersinia pestis # 2 457 4 467 469 471 51.0 1e-132 MQQFGVIGLSVMGKNLALNVRNHGFSVSGFSIDKPEVDALAKYEDDKLKPCYTWEEFVDS LEKPRKILVQIMAGDPVDQTIQKLIPLLDKGDIIIDGGNSNFHDTNRRYHELKKHGLHFI GMGVSGGEEGALNGPALMPGGDKEAYEEAAPILTAMAAKTEDGRACVSYIGPEGAGHYVK MVHNGMEYAIMQEISEVYDIMRKVAHKSNKEMADIFAEWDKGDLNAYLIEIASQVLRQKD DLTDDDVIDHILNVASYKGTGNWMLEDAIKLGAPITVVAEAVLARFMSKATTREGKEVVY DGEVASDLIDNLGKAMYLAQIVAYAQGFQQLTMAAKAYDWELNYPAIAQNWEAGCIIHAK TLYHIEDAYADGKQLDNLFQDPYFAGVMEKNLPALRAVVKLAAEAGVPTPSFSAALNYLE SIFNPSLPANMIQAQRDYFGAHTYYRNDREGVYHTEWYEEK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:17:06 2011 Seq name: gi|300497165|gb|AEAT01000047.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00017, whole genome shotgun sequence Length of sequence - 5700 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 4, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 401 - 967 786 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 1005 - 1064 6.3 + Prom 992 - 1051 4.6 2 2 Op 1 8/0.000 + CDS 1110 - 2534 2126 ## COG0215 Cysteinyl-tRNA synthetase 3 2 Op 2 7/0.000 + CDS 2527 - 2970 301 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 4 2 Op 3 . + CDS 2957 - 3706 558 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 + Term 3737 - 3769 -0.7 + Prom 3738 - 3797 1.6 5 3 Op 1 . + CDS 3818 - 4387 725 ## Ldb1677 putative RNA polymerase sigma factor 6 3 Op 2 . + CDS 4455 - 4670 429 ## Ldb1676 hypothetical protein + Term 4723 - 4768 13.7 + Prom 4715 - 4774 5.4 7 4 Tu 1 . + CDS 4869 - 5591 950 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Term 5644 - 5691 7.7 Predicted protein(s) >gi|300497165|gb|AEAT01000047.1| GENE 1 401 - 967 786 188 aa, chain - ## HITS:1 COG:L181238 KEGG:ns NR:ns ## COG: L181238 COG0494 # Protein_GI_number: 15673901 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Lactococcus lactis # 7 167 9 169 186 128 44.0 6e-30 MTLLTDLKNYQPFNEQEAADVKEMIYRLETGEELFLRSNLAEHFTASAWVVNPARDKALM AYHRIYDSWAWLGGHADGDQDLLHVALKEVAEESGVKATPVTDQIYSVEILTVDGHEKKG KYVPSHLHLNVTYLLEADDSLPIRPKEDENKAVAWFGLDEALEKSTEPWFVDRIYSKLNA KLKDYPAK >gi|300497165|gb|AEAT01000047.1| GENE 2 1110 - 2534 2126 474 aa, chain + ## HITS:1 COG:BS_cysS KEGG:ns NR:ns ## COG: BS_cysS COG0215 # Protein_GI_number: 16077162 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Bacillus subtilis # 1 473 3 464 466 493 53.0 1e-139 MKLFNTLTRQKEEFKPLVPGQVSMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYKGYKV NYVSNFTDVDDKMINEARAEGTTVPELAERYIQAFLEDTRALNIEEATLHPRATHEIPAI IDFIQTLIDKGYAYETDGDVYYRAKKFADYGHLSDQNIDQLEEGASQHVNDEEQGRKEDP IDFALWKGQKVADEIAWDSPWGKGRPGWHIECSVMSTKYLGDTLDIHGGGQDLEFPHHEN EIAQSEAKTGKKFVNYWLHNGFVTVGKDEEKMSKSLHNFVTVHDILKTVDPQVLRFFMAS VQYRSQIDYSEENLEQAANILGRFKNTLEGINYRLADATEGLPDPDLAKLVTETTAKFEA AMDDDFNVQNALTAIYEALPAVNSNANAEKADKESLRLFAKKLAAWLSVFGLDVDKLLAK EAGDDDAVIEELVAQRTEARKNKDWAKSDELRDQLKEMGVVLKDTPQGTRWSRE >gi|300497165|gb|AEAT01000047.1| GENE 3 2527 - 2970 301 147 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 7 139 3 135 141 120 47 2e-27 MNKAQKLTEKKIDPNTLSGQTLAYLGDGIYEAAIRRHLIKGGMLKPQNLQRAATHYVSAK AQAGLIAKMLDTGFLTEEEETAYRRGRNAKTHTKAKNTSLATYEMSTGFEAVFGYLDLAG EEGRVKELIAWCIDEVESEGTREYVFN >gi|300497165|gb|AEAT01000047.1| GENE 4 2957 - 3706 558 249 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 1 249 1 249 255 219 45 4e-57 MSSTNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPK NKLDKLTGGENHQGLVLAVASFEYADFDQLLDKLGQEEAPFLLMLDNIEDPHNLGSILRS ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA MEGDDYRKWNANGKIVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLLY QAFNSRHPL >gi|300497165|gb|AEAT01000047.1| GENE 5 3818 - 4387 725 189 aa, chain + ## HITS:1 COG:no KEGG:Ldb1677 NR:ns ## KEGG: Ldb1677 # Name: not_defined # Def: putative RNA polymerase sigma factor # Organism: L.delbrueckii # Pathway: not_defined # 1 189 1 189 189 321 99.0 1e-86 MGLTKERERLLISRIQKDDDEQALKELYYSCLPVIGGTIKQYFVELYDNQDWEQEALILC YKTAKRFDLKQGKPFVGFYKVSLHNRAINLIRRGKRKKRLAASDQVYWEDVAPELEQASC LIASPPAPVLDWQDLVESLSMLELEELLLELGYKQAGEIKRQYQVNEMGLRRAKYRVKEK IKLKLRIGA >gi|300497165|gb|AEAT01000047.1| GENE 6 4455 - 4670 429 71 aa, chain + ## HITS:1 COG:no KEGG:Ldb1676 NR:ns ## KEGG: Ldb1676 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 71 1 71 71 115 98.0 6e-25 MSEIVKTAFLDRSMKEVFDWSDSDTPVRDALWDYFMESNGHNTDKTEEAMLPFMSDSDDK IIAFVNENLKK >gi|300497165|gb|AEAT01000047.1| GENE 7 4869 - 5591 950 240 aa, chain + ## HITS:1 COG:lin1546 KEGG:ns NR:ns ## COG: lin1546 COG0596 # Protein_GI_number: 16800614 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Listeria innocua # 12 235 9 237 246 140 38.0 2e-33 MAKKQKGLLALAVILAALLLAFGLYFGNYYHADKTAQQAMKSSRTVKVKQTAEGYLFDGP AKKNAIIFYPGAKVETTVYAPLLKQIASQEADVFLVAMPLHMAFFGLNKADKIRASYHYQ NWYMSGHSLGAAMAAMYSADHLKDYRGLIMLAGYPTKDLHAANFSVLSIYGSKDGNAKML QKNPQYLPNDYTKQVIKGGNHAQFGNYGLQKGDGQATISRKAQQQATAQAVRQYLLAHDK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:17:13 2011 Seq name: gi|300497160|gb|AEAT01000048.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00176, whole genome shotgun sequence Length of sequence - 5150 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 4, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 55 - 639 507 ## COG2755 Lysophospholipase L1 and related esterases 2 1 Op 2 . + CDS 636 - 1289 980 ## COG0406 Fructose-2,6-bisphosphatase 3 1 Op 3 . + CDS 1365 - 2186 1154 ## LDBND_0061 hypothetical protein + Term 2218 - 2263 13.9 + Prom 2720 - 2779 6.2 4 2 Op 1 . + CDS 2893 - 3123 303 ## LDBND_1400 transposase, IS30 family 5 2 Op 2 . + CDS 3146 - 3931 302 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase 6 3 Tu 1 . + CDS 4372 - 4596 297 ## gi|325685181|gb|EGD27304.1| hypothetical protein HMPREF5505_1040 + Prom 4619 - 4678 2.0 7 4 Tu 1 . + CDS 4708 - 4962 174 ## gi|325685181|gb|EGD27304.1| hypothetical protein HMPREF5505_1040 Predicted protein(s) >gi|300497160|gb|AEAT01000048.1| GENE 1 55 - 639 507 194 aa, chain + ## HITS:1 COG:SP1450 KEGG:ns NR:ns ## COG: SP1450 COG2755 # Protein_GI_number: 15901300 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Streptococcus pneumoniae TIGR4 # 35 187 57 210 211 62 30.0 7e-10 MRILLLGDSIFARKEGLDQPRINWTLKEKKPDLEIDNTAVSGINSGALLALLGDLALKRP RADQLFLMVGVNDAASHKQVPLDQYRKNLQAIVSALVCFYPGTKTVLVSGPAVDEAKQRR RTNAKLAKYAKVMEEVAAEYQLAYADFFTAMLKEGDLKALCRGELDDGLHFGPRGYQLLA AEMMKQLPKEEVEQ >gi|300497160|gb|AEAT01000048.1| GENE 2 636 - 1289 980 217 aa, chain + ## HITS:1 COG:lin0565 KEGG:ns NR:ns ## COG: lin0565 COG0406 # Protein_GI_number: 16799640 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 4 217 9 224 235 103 33.0 2e-22 MKKIYVVRHGRTYLNKYQRLQGWSDAPLTEEGIEGAHRMGKALKDQHFDLVASSDLKRAA DTRKIIVSENDNWESTEMTQTADLRELFFGYYEAFHDTEGVAAAFKSTKYPRLVDAVKDG YTWQEIGDLFHAADPEGDAESGSEFESRLKRGIDYLVNHDESEQILLVGHACVIHCLACI YGGKHLRTDLPKHNEMTVLNVDDNGQVSLEEFGRPMY >gi|300497160|gb|AEAT01000048.1| GENE 3 1365 - 2186 1154 273 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0061 NR:ns ## KEGG: LDBND_0061 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 273 1 273 273 482 98.0 1e-135 MISKENKLLIRRYLYAMINMYGIIPLRHAYHIFSHQNPLLNIDEDDFWEFTMLDQSDQDY NVAGERELLVEKRGEDEDEEFYLYGDWVLMDLPQDFKRIKELQHNRLYYVPEKDEFLRRE NEWYYERTTATEEYRQYLKDSNPGLSDDRLEEAFFEALTQLHSVSYGKTVEETINAVPRS LRLIGFTVTDEQEDELRDLLRRMLDGTRQEALRGKMYKYHKLPTTLEIIETEGLTPENVS RIHSGKIDAMELVPQIELKQPDLAQQLATIYQQ >gi|300497160|gb|AEAT01000048.1| GENE 4 2893 - 3123 303 76 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1400 NR:ns ## KEGG: LDBND_1400 # Name: not_defined # Def: transposase, IS30 family # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 76 1 76 349 145 97.0 6e-34 MDHSYSNTKPYQKGKHLTLNDRTTIQELHSKGYSNRAIARELNCSPSTVGYELKRGTVSL YTGNVKRYKAVEGQTT >gi|300497160|gb|AEAT01000048.1| GENE 5 3146 - 3931 302 261 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 37 249 112 313 317 120 37 2e-27 MFLRRHKFIDYVSHCFHNHGWSLDACVGYALAKGIFQKDQVVSTKTLYNYVDLGLMDIKN GDLPEKVKRNTKTRRARVNKRILGRSIDERSPRIESRKDFGHWECDLVLGHKTKDDDVLL TLCERKTRQFFMIKIEDKTSVSVIKAFDKLREYYGSKWNQIFKSITTDNGSEFADLSDLE QVSKTLVYYAHPYTSCDKGSVERHNGLIRRYIPKGDRMDKYSAEDIAKIEVWCNSLPRKI LNYKTPEEYFDTELDRIYRRR >gi|300497160|gb|AEAT01000048.1| GENE 6 4372 - 4596 297 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|325685181|gb|EGD27304.1| ## NR: gi|325685181|gb|EGD27304.1| hypothetical protein HMPREF5505_1040 [Lactobacillus delbrueckii subsp. lactis DSM 20072] # 1 74 1 74 196 121 98.0 1e-26 MDRFSKLAVSTAVAVSLLSVTAPTFTSAVYASETTQNESDNLSSTEVNAAIDNLAEQLEE AYNAAPNVDVEEIA >gi|300497160|gb|AEAT01000048.1| GENE 7 4708 - 4962 174 84 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|325685181|gb|EGD27304.1| ## NR: gi|325685181|gb|EGD27304.1| hypothetical protein HMPREF5505_1040 [Lactobacillus delbrueckii subsp. lactis DSM 20072] # 1 84 113 196 196 158 98.0 1e-37 MLNKIGLGELKNLAKVIFKPATVRYLKSHAWKKASALMVKAIMKYAPKKVASLAVKKLAN LALPGVGWASVAWWGAQCGWDEFH Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:17:33 2011 Seq name: gi|300497152|gb|AEAT01000049.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00103, whole genome shotgun sequence Length of sequence - 8005 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 4, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 114 - 147 1.1 1 1 Tu 1 . - CDS 351 - 560 165 ## LCAZH_p006 hypothetical protein - Prom 594 - 653 5.6 + Prom 562 - 621 7.5 2 2 Tu 1 . + CDS 779 - 1246 357 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) + Term 1440 - 1481 0.3 3 3 Tu 1 . - CDS 1487 - 2770 778 ## COG3464 Transposase and inactivated derivatives - Prom 2837 - 2896 5.6 - Term 2904 - 2932 1.0 4 4 Op 1 26/0.000 - CDS 2939 - 3895 1620 ## COG1079 Uncharacterized ABC-type transport system, permease component 5 4 Op 2 24/0.000 - CDS 3895 - 5034 1848 ## COG4603 ABC-type uncharacterized transport system, permease component 6 4 Op 3 15/0.000 - CDS 5027 - 6571 175 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 - Term 6595 - 6628 0.4 7 4 Op 4 . - CDS 6655 - 7740 1720 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein - Prom 7794 - 7853 6.7 Predicted protein(s) >gi|300497152|gb|AEAT01000049.1| GENE 1 351 - 560 165 69 aa, chain - ## HITS:1 COG:no KEGG:LCAZH_p006 NR:ns ## KEGG: LCAZH_p006 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_Zhang # Pathway: not_defined # 1 69 7 75 75 81 89.0 9e-15 MSQSNLEKQEAKLKSLNPKIKDEKNKIEQRLGKQIISQAHLDYANLSNDQIKLLAKQFSE FLKVKSVDH >gi|300497152|gb|AEAT01000049.1| GENE 2 779 - 1246 357 155 aa, chain + ## HITS:1 COG:SPy1531 KEGG:ns NR:ns ## COG: SPy1531 COG0783 # Protein_GI_number: 15675430 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Streptococcus pyogenes M1 GAS # 2 153 24 175 175 160 51.0 1e-39 MKYTKTKAVLNQLVADLSQMSMIIHQTHWYMRGPNFLKLHPLMDGFMEEIDSQLDVISER LIALDGNPYSTLKEMAENTKIQDWPGEWNKTTPERLAHLVDGYRYLEDLYQHGIEVSDVE KDFSTQDIFIGLKTAIEKKIWMIQAELGSAPEIDE >gi|300497152|gb|AEAT01000049.1| GENE 3 1487 - 2770 778 427 aa, chain - ## HITS:1 COG:SP1792 KEGG:ns NR:ns ## COG: SP1792 COG3464 # Protein_GI_number: 15901621 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pneumoniae TIGR4 # 12 417 11 412 418 196 31.0 9e-50 MDPVDNNIKFALSIKDPNVVFYKYNYQVIKAKRAKVYIATVKFDQKHCANCGFCELSHNG HYVSRVTYLAANASEPVYLELHKERVICRNCKASFMATSDVVDKYCCISRATRQKVFMSL QDDRTQASIAIDAGISASTVCRYLDNYDDLFRRNLNYLPVHLAMDEFRGIGGRLHFICIN GAGEHEIQQILPDRFKQSITDYFKQFPASVRARVKTVTVDLNSYYQDIAKAMFPQAKIVI DRFHIVAMMTRAFNQTRVQTMKKYNKRSYEYRTLKFAWRLYLKYAGNLDEEHVFYDRHLR KQLTQLERVEQGLTINEELKASYESMQSIMENLKNQDKDKLVEDLYTNQNISPYMKAVFQ TFKKNLVVVLNASESDYTNGPVEGMNRMIKQTQRTAFGFRNYNHMISRIKLRQMRTKPMK ETELKVA >gi|300497152|gb|AEAT01000049.1| GENE 4 2939 - 3895 1620 318 aa, chain - ## HITS:1 COG:SPy1225 KEGG:ns NR:ns ## COG: SPy1225 COG1079 # Protein_GI_number: 15675189 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 318 1 318 318 401 70.0 1e-111 MNFVTVLALIVSSTLVYSAPLIFTALGGTFSENSGIVNVGLEGIMTMGAFTSIVFNLSFA STFGTATPWLGALLGGIVGIIFSLLHAVATVNWRADHVISGTVLNLMAPPLAVFLVKAIY NKGQTENINQNFGYFSFPGLANIPVIGPIFFKNTSAPAWVAIVLSIFLYWVLYKTRFGLR LRSSGENPQAADTLGINVYKMRYAGVLISGFLGGIGGAVFAEAIAGNFSVSTIAGQGFMA LAAMIFGRYNPIGAMLSSLFFGFAQSLSIIGDQLPGISSLPSVYLQIAPYVLTIIVLVVF FGKTVGPAADGQNYIKSK >gi|300497152|gb|AEAT01000049.1| GENE 5 3895 - 5034 1848 379 aa, chain - ## HITS:1 COG:SP0847 KEGG:ns NR:ns ## COG: SP0847 COG4603 # Protein_GI_number: 15900734 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 4 354 1 349 352 300 48.0 4e-81 MIKVSPKAKRLLVPIVSVIAGFLVGAIIMLVWSYDPFQAYSSMFESALGSANGIGETIRN ATPLIFIAIGFQISSAAGFFNIGLPGQAQAGWLTAIWIGLAFKGLPVYILLPFEIIAGSL AGALVAGIAGWLRAYFGTNEVISTIMLNYIVLYLCQYLHQDVMNKSLRVDTDTTKTIGAS GSLRIPWLSEMFGGSRISGGIFLAIIALVIFWFLMKKTTVGFEIKAVGLNPFASRYAGMS DKKNIIISMLLSGAFCGLGGVVQGLGTYQNYFTQTTTLDIGWDGMSVALLGGMSAIGILL ASLLFSILKIGGLGMQTAAGIPFEIVSIVIAAIIFFVAISWAVGLLFKEKKSDKTATYIA TAETAGRQAANDQQKGGEA >gi|300497152|gb|AEAT01000049.1| GENE 6 5027 - 6571 175 514 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 261 482 9 217 309 72 25 1e-12 MEKEIKNIIEMRHIVKDFNGFKANNDINLTLRKGEILALLGENGAGKSTLMSILSGLLEP TSGEIYVRGEKVNISGPNVATSLGIGMVHQHFMLAQAFTVLENIILGHETTKGLALDFKT AREKILALSKQYGLAIDPDAKISDITVAQQQRVEILKVLYRGADILIFDEPTAVLTPQEI TEFIKIMKNLAKEGKSIILITHKLKEIKESADRVTVIRAGKSIQTVSVADANDEQLAEMM VGHHVNFKLDKAPINLGKNILEVKDLHVNEDRGTEAVKGLSFNIRGGEILGLAGIDGNGQ DELVEAITGLRHVEGGQVVINGQNLTNKPVRQITEAGVGHIPADRQKYGLILQLPLSENI ASQTYYKEPYSKHGIMNEQTIREHARELIKKFDVRTTSEQLPASDLSGGNQQKAIIAREL DRDADLIIAFQPTRGLDVGAIEYIHSQLLKQRDAGKAVLLVSYELDEILQLSDRIVVLHD GAESGEVKPDQTSETELGLLMTGKNTKKEAAAND >gi|300497152|gb|AEAT01000049.1| GENE 7 6655 - 7740 1720 361 aa, chain - ## HITS:1 COG:L61620 KEGG:ns NR:ns ## COG: L61620 COG1744 # Protein_GI_number: 15673420 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Lactococcus lactis # 6 361 3 350 350 264 47.0 2e-70 MRFNYKKLVAAGAATLSIAAVLTACSGKKSNTSVNKDTKHGIALITDGNGVDDHSFNQAA WSGFKDYGKEHGLKQGKGGYQYFESSSAADFTPNLTQAAQAGYQTIYGVGYMLTDSVKAA SKKYPKKNFVLIDSVITGRKNVASVTFKSNEASYLGGLAAAYTTKTNKVGFIGGAKSSVL DLFEAGFKQGVKDGAKALGKKITVYDQYIGNFTSTDKAKSIAQSMYTDGADIIYQAAGNA GNGVFTEAKTRNKATTAAKKVWVIGVDVDQANLGNYTSKDGKKANFTLTSVLKGMRFACK DIADKAYKGKFPGGKVISYGLAHDGVSVTKGNLDAKTWKAVQAARKQILAGKIKVATAPS K Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:17:40 2011 Seq name: gi|300497135|gb|AEAT01000050.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00064, whole genome shotgun sequence Length of sequence - 16459 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 11, operones - 4 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 60 - 119 5.9 1 1 Op 1 . + CDS 159 - 1922 1578 ## LDBND_0981 hypothetical protein 2 1 Op 2 . + CDS 1925 - 2218 275 ## COG2085 Predicted dinucleotide-binding enzymes + Term 2220 - 2278 10.3 - Term 2208 - 2262 4.2 3 2 Op 1 . - CDS 2301 - 3287 1222 ## COG0673 Predicted dehydrogenases and related proteins 4 2 Op 2 . - CDS 3280 - 3930 424 ## COG0120 Ribose 5-phosphate isomerase - Prom 4030 - 4089 6.8 + Prom 4036 - 4095 7.5 5 3 Tu 1 . + CDS 4132 - 4971 878 ## COG1737 Transcriptional regulators + Term 5099 - 5139 7.2 + Prom 5218 - 5277 4.9 6 4 Op 1 . + CDS 5315 - 6130 364 ## LDBND_0981 hypothetical protein 7 4 Op 2 . + CDS 6111 - 7058 760 ## LDBND_0981 hypothetical protein + Term 7150 - 7179 -0.3 + Prom 7060 - 7119 5.5 8 5 Tu 1 . + CDS 7199 - 7864 519 ## HMPREF0424_0748 hypothetical protein + Term 7916 - 7956 9.0 9 6 Tu 1 . + CDS 7995 - 8159 74 ## LDBND_1834 transposase + Prom 8521 - 8580 4.3 10 7 Op 1 5/0.000 + CDS 8723 - 10351 755 ## COG1401 GTPase subunit of restriction endonuclease 11 7 Op 2 . + CDS 10344 - 11411 733 ## COG4268 McrBC 5-methylcytosine restriction system component + Term 11417 - 11462 12.1 - Term 12175 - 12226 14.7 12 8 Tu 1 . - CDS 12273 - 12914 626 ## COG2070 Dioxygenases related to 2-nitropropane dioxygenase + Prom 13112 - 13171 2.3 13 9 Tu 1 . + CDS 13222 - 13716 454 ## gi|300811877|ref|ZP_07092340.1| hypothetical protein HMPREF9264_0783 + Prom 13739 - 13798 6.0 14 10 Tu 1 . + CDS 13905 - 15158 992 ## gi|300811878|ref|ZP_07092341.1| conserved hypothetical protein 15 11 Tu 1 . - CDS 15348 - 16142 416 ## LA2_04410 IS4 family transposase - Prom 16384 - 16443 3.6 Predicted protein(s) >gi|300497135|gb|AEAT01000050.1| GENE 1 159 - 1922 1578 587 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0981 NR:ns ## KEGG: LDBND_0981 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 587 3 589 589 1097 95.0 0 MQKSAITKLKKIGLSEESIDFLLQFYTGAVNAYGIISLEDLYGLYKDIKRQNQDYSKITF DQFLTFGEVTGSKLLEHYAIFSPEIINKYFNDSGIPLTSPLLVHEKIAWKENSLQSIWYV YMDLCEYSSKFYLTPNDLRDFAEHKETADNRAFQKILAELKAFGKPLDQVESQIYPNDTG INEITKLVTYAYQTSPGNLEAASEEFENLSLFYRLDYGKHTFQEICTLMKRALYDLPCWG LGGYNYGEMMGIPKEDITENNFFDDSFYKDDNDLFDLDEDDVLTDHLQQLGQALLDLASD THPHAAMRKKASYPKRLLDKTMKKRYADAGFDTDKLDFLHKFFQAAVNLYGVIELVDLAQ IYEDIKDKNHYPDISDDEFIDFAELVRREKVPYYVFEQHELFKNGIDLEFERILVDEDLL GPDGLKSLEGVYNVYFSEYANVYWEPEDMLAYTGHQQEKEELDMLAYFTQLGSRDAKIVS LESKDLARKIVDHFLWTSKSGLQEADPIPKEEFRQLLANGGKTLNKEIEDNVLELIRNYD KNRHVYVLKGWTTDEWNSNLDIHGEQVQRAKAMQAILDMIKKSKDPE >gi|300497135|gb|AEAT01000050.1| GENE 2 1925 - 2218 275 97 aa, chain + ## HITS:1 COG:Cgl1231 KEGG:ns NR:ns ## COG: Cgl1231 COG2085 # Protein_GI_number: 19552481 # Func_class: R General function prediction only # Function: Predicted dinucleotide-binding enzymes # Organism: Corynebacterium glutamicum # 2 97 131 226 226 106 58.0 1e-23 MLQSWLPDSNVVKGFNTTFAATLQSGKIGDLPTTVLLASDDQEAKVTIKEALAGSPLRVF DAGALKRARELEATGFLQMTLAASEQIAWTGGFSIVK >gi|300497135|gb|AEAT01000050.1| GENE 3 2301 - 3287 1222 328 aa, chain - ## HITS:1 COG:CAC3400 KEGG:ns NR:ns ## COG: CAC3400 COG0673 # Protein_GI_number: 15896641 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Clostridium acetobutylicum # 1 324 1 320 322 344 52.0 1e-94 MTKYNWGIIGTGWIAGEMADALKRVNGEVYAAANPHKEALETFGQEKGIKHLYTDPDEMI KDPNLDIVYIATPHNFHYQYAKQALLAGKHVFCEKAITINEKQLEDLASLAKEKNLILTE GFTLYHMPLYRKVKELIASGKLGQIQLVQVNFGSLKDYDPANRFFSKDLAGGGLLDIGGY ATAFARTFLDEVPNNILTTVKFFETGVDEQSGIILKNDRQQLAVMALSMRAKQPKRGVIS GTKGYVEISNYPRAMQAEVTYTASAHEECKETITAGESDLALDYEVVDMQRYVEQGHDDG ELQTSREVMHILTAVRGQWGMRFPDDQD >gi|300497135|gb|AEAT01000050.1| GENE 4 3280 - 3930 424 216 aa, chain - ## HITS:1 COG:CAC1431 KEGG:ns NR:ns ## COG: CAC1431 COG0120 # Protein_GI_number: 15894710 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Clostridium acetobutylicum # 8 199 14 215 227 86 32.0 4e-17 MTLISDFALKKIQPGQRVSLGGGSNVADLTRAIAKADLALDLYSPAPATRQLGASLGLVI KPAEEADQLDLAFDGADSVDFSLRALKSKGGIQLFEKIAAQEADEYILLLPEGRLREKLD AEIQLCLEVAAPAVKSLLNFAKGLALKTSVREDESILGNKLVDLYAENWDKIEEVNQQLL AFNGVVASSLFAGEVTSVITVQNGQAVEIRRGENHD >gi|300497135|gb|AEAT01000050.1| GENE 5 4132 - 4971 878 279 aa, chain + ## HITS:1 COG:BH2675 KEGG:ns NR:ns ## COG: BH2675 COG1737 # Protein_GI_number: 15615238 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 264 4 271 287 99 26.0 5e-21 MENEESIIEQILRQKNGMSPSDQKVAQIVLNKPEEVVNYTISQLAQAAGVSGASVTRFCH NLNLSGFHQLKVSLARVKSPISSLASLNQDDVSQALDQIAASKEDEIDRTIRRLPAAILK EVLDLLENSRLIQVAAEGDTYPVAEDAVYKLNQLGLLAISSPTMEAVIGQTMNMSSSDCL WLISNSGESFGLLKLADLAKEKGIKVVAMTNRPDSPLAAKSDYHLTTAIGQTVLQEEYLF SRLASSSLVEAIFLLLLNRDKKRLSHIQAHEKLIADRKV >gi|300497135|gb|AEAT01000050.1| GENE 6 5315 - 6130 364 271 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0981 NR:ns ## KEGG: LDBND_0981 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 270 3 277 589 261 48.0 2e-68 MQNSVLTKLKQAGFSAELIDFLLQFYIGAVNVYGIISLDDLYDLFQKIKEHNAAYPEITS EQFISFGELTGGQSGTHYLVYNPAVFDKYSKQVDNPLTSPLLVNKKVTWTEIDIQQIWNL YLEICQECGRFYLTPENLLDYATHEENEDNNNFRQALSNLKLDGKKLDKVASRIIPGDTA VNEIINLVTYIYQSGAGVLYDAENELQFAFEYYKLKLSQREFKEMSTLMKQAVYEQPCWG LGGRSYVEVKGYDTGDDFDETFYDEDDDDFF >gi|300497135|gb|AEAT01000050.1| GENE 7 6111 - 7058 760 315 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0981 NR:ns ## KEGG: LDBND_0981 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 5 313 264 584 589 371 61.0 1e-101 MMTTFFDWEDDEGLLEEDSDIDSNSLHDLLLGLADSDQPQDKTVNKVSYPKRLLDNTMKK GYAKAGFTEEKLDFLHKFFQGAVNLYGVIEIIDLSQIYADIKDKNQYPDISTDEFIKFAE LVRREQVPYYVFDQHELFRNRIDYDFERMIVNEDLLGPEGLHSLEGVYNVYYSNYASDYW EPEDMLAFAGHQQEKEEQALLDFFTKLGNQADESKELAKKIVDHFIWTCKGRIEDVDPLP KAQFMQLLAHGNRTVDDELQDQLLELNNNYNRHRHVYLLKGWTTDEWSTNPDAQGEKAEQ LKAMPRLLGLIEKDS >gi|300497135|gb|AEAT01000050.1| GENE 8 7199 - 7864 519 221 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0424_0748 NR:ns ## KEGG: HMPREF0424_0748 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis # Pathway: not_defined # 4 219 37 252 252 305 65.0 1e-81 MAALNPEENVSPNLIGLTVDYMTRFMSGTAIEEAFKISLIGALFLGMADKARRLSSGIKG LDDDSVINAVKLTGFDACARAGLIAYKPVEEINPDVATIQNVRTMVERSLNFLDAYGPKI LDGFTMDGGYTDTVDSGDGDFITADTLWDFKVSKVKVKKEATLQLLMYWRMGMHSIHPEF KQLKYLGIYNPRSNLLSRISVAEIPSNVILEVERDVIGYAS >gi|300497135|gb|AEAT01000050.1| GENE 9 7995 - 8159 74 54 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1834 NR:ns ## KEGG: LDBND_1834 # Name: not_defined # Def: transposase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 49 498 572 583 82 60.0 6e-15 MPGKPNYLCVPAIQKVILGAFGLDEEWIKTQARLIGKDIQNAAMPEEQKDDEEY >gi|300497135|gb|AEAT01000050.1| GENE 10 8723 - 10351 755 542 aa, chain + ## HITS:1 COG:mcrB KEGG:ns NR:ns ## COG: mcrB COG1401 # Protein_GI_number: 16132167 # Func_class: V Defense mechanisms # Function: GTPase subunit of restriction endonuclease # Organism: Escherichia coli K12 # 259 536 173 461 465 265 48.0 1e-70 MLLCLNSPDRYSVFNLRGCQRLASWLKLDYEFEQLATVKNLQKWLVLAQEIIERLSDSQL LLDEYKYYLEQNTEGEPNYLHYLCDKFGYDFQWSAEKDSNLLVLASDISNYLAQHRDLTP ATGQKQYWWLNANPSFWNLTDLKVGEERYYTLYSESGHKRRVFQHFLDAKFGDKVIGYES YPSRNVVALMEISRASDGEAVFFKKIEEFEHPVAYKDLRQCPELKDLEVFISPTGSLFKV TEDKFNFIMDKVREHNPVAYTKENFFSEVYMPEADYDRVSALLKYKKNIILQGAPGVGKT FAAKRLAYAMMGQKKDENIELIQFHQSYTYEDFMMGYKPTEHGFELHYGSFYRFCKRAAE HPDEPFFFIIDEINRGNLSKIFGELLMLLEKDYRDQPITLAYTAEPFAVPSNVYLIGMMN TADRSLSIIDYALRRRFSFFDMKPAFESTGFMRQQLIAGNVIFDRLINRIEELNDEISRE PSLGPGFCIGHSYFSNPDGKWTLDELRLIVDYDILPMLREYWFDNQDKLEHWENALHEVF DD >gi|300497135|gb|AEAT01000050.1| GENE 11 10344 - 11411 733 355 aa, chain + ## HITS:1 COG:mcrC KEGG:ns NR:ns ## COG: mcrC COG4268 # Protein_GI_number: 16132166 # Func_class: V Defense mechanisms # Function: McrBC 5-methylcytosine restriction system component # Organism: Escherichia coli K12 # 7 351 6 347 348 147 26.0 3e-35 MIKDNSIFIKNVYYMLSYAFGNLHEKEYKNIAKESFDNLDNLFAAILAKGIGKQLKQGLY REYVSCHDNLPAVRGKIDLVETIRNQLACRKLVACDFDELSANNLYNQILKSTALQLARS KKVDKKYRDLLKKELVFFGEIDMVDLSKVPWQKFHFHRYNQSYRLLLGICELLTEGKIMA AEQGTMRLTDFADDQRMSHLYEKFILEYYVQEYAQKYRGFTAKAAMIPWQLDDDNKNLLP VMKSDVLLSYGGREMIIDAKYYAHSLQSNFDTKTIHSANLYQIFAYVKNLAAIRRNDTVA GMLLYAMTDEEIVPDEDYQMSGNQISVKTLDLGQDFSLIKEQLDRIVTEFFTELG >gi|300497135|gb|AEAT01000050.1| GENE 12 12273 - 12914 626 213 aa, chain - ## HITS:1 COG:AF2173 KEGG:ns NR:ns ## COG: AF2173 COG2070 # Protein_GI_number: 11499756 # Func_class: R General function prediction only # Function: Dioxygenases related to 2-nitropropane dioxygenase # Organism: Archaeoglobus fulgidus # 4 144 100 235 274 85 39.0 6e-17 MNRKWAKKFKEAGIKIIFRAVTPTAENTREAIDAGVDVIIATGFDEGGTVPAKVIGTFAI LPLIVDAADGKVPVVAAGGLVDKRTVRAAFDLGAEGVYAGTAFLATEESLLAENIKQDML KYDADDLLMFRAPNSFYRSLPGELPEKLLEMDKQGKSAAEIWAAAGDYNCLLCGMHDGDL SRGIASFGLGISSIHSIAPVSVVVDRLNSGVIA >gi|300497135|gb|AEAT01000050.1| GENE 13 13222 - 13716 454 164 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300811877|ref|ZP_07092340.1| ## NR: gi|300811877|ref|ZP_07092340.1| hypothetical protein HMPREF9264_0783 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] hypothetical protein HMPREF9264_0783 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 1 154 1 154 164 225 100.0 7e-58 MYEASAENLAGGYSDPLDGWYTEEKAIYDAHGSVVTGHYTNCMGNYQYVGLVLDQSTGTS AADFGRSKDGTSQSGTLVSVDEFEAALNSYVASYESALNAAKTAYDQAQADKSQVDAAKE NVNGSQAAYDEAVAKVAKIKKVNQQLSKAYQAYQKSLKSSRKKK >gi|300497135|gb|AEAT01000050.1| GENE 14 13905 - 15158 992 417 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300811878|ref|ZP_07092341.1| ## NR: gi|300811878|ref|ZP_07092341.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 142 417 1 276 276 523 100.0 1e-147 MSNKLKAISKVSVALALLGAAVPAVEAAPTAMAAKKATKKAKKSTKKTVKKSTKKAKKAK KTTKKKATKKVAKKTAAKKPAKKSVKKPVAKKPVKKAVKKPVAKKPVKKSVKKPVAKKPA KKVVKKTTTKKTAKKVVKHVTMADKYQPKVKSGTVNVAWDSILLPEDFITNRSSLPSYVY FDFLDPVNTEKGGTHKTRIQAEYTDGSKEVVGTVTFVVPMMDADKYHPTAQDVTVNYGDA FDIREDAITNAPGYFPNDPALPQFEDADDQTRFDVRYDYGQDIGGSYKSGTYNDQIEVRY PDGSYNYTNKFKITVLPSDADKVKVSLKSSYFTVSSNETLSHYTDDDFWQTLNDPTRFLN IGSALPEGTVIHFADDHDSNLDNTVGPLEPKKYVTSLIFEFPDGSEYQTDDFTLDVK >gi|300497135|gb|AEAT01000050.1| GENE 15 15348 - 16142 416 264 aa, chain - ## HITS:1 COG:no KEGG:LA2_04410 NR:ns ## KEGG: LA2_04410 # Name: not_defined # Def: IS4 family transposase # Organism: L.amylovorus # Pathway: not_defined # 1 264 195 455 456 251 48.0 2e-65 MDRGYLSFNMIQHCNVNKGCYYVIRSKTGFTAIKEISQLPDEEYDGILDCWVTTSNHFYT QNKDHLNIHLVNHVNHQYKKFKSKNSKDNSWDFKQFCHVRFRVCKFRINPDDAPNKEQWE VLVTNLDVDKFPLDRMKELYNLRWGIEKSFKTLKYDDCGIQFHSKKDEFVKMELYAHLIA YNVIMSMVNQAYAPHPKSKSDSTYQINLSMAFFSAHYLLGAGWLKKDYGELLYIISMYIG MTRPNRSYNRNIHSRSAVVFNYRL Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:18:38 2011 Seq name: gi|300497133|gb|AEAT01000051.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00027, whole genome shotgun sequence Length of sequence - 1458 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 34 - 1413 412 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|300497133|gb|AEAT01000051.1| GENE 1 34 - 1413 412 459 aa, chain - ## HITS:1 COG:SPy0198 KEGG:ns NR:ns ## COG: SPy0198 COG2801 # Protein_GI_number: 15674400 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 193 450 8 263 268 253 53.0 8e-67 MTKYAKEIKLAIYHEWVDDHRRGTYLSQKYGMGRGGIQYLVDLIQKHGEDILDRPQQKYT ANFKLAAIDRVLLGGEALSQVSLDLGLTNTGILANWLRSFKENGYTVITKKKGRPPKNAQ KQGQTTDQRAGRAGKEAYSRACIHKKIGGLNSRTEEPRKEELARAITELRQELRLSVKYI IDVINANPGLPHISRSNYYYQTHKLDKDSGNQKLMDRIKEIFLEHSQRYGYRRIYGQLRR EDYEVNHKKVQRLMQKMGLFAISIRKRRKYSSYYGVQGKIKPDLIKRNFYAIIPNRHWFT DVTEFHLKDQKLYLSPIIDGCTQEIISYNISRHPDLKQVMTMLDDAFEKHPALNGLIFHS DRGWQYQHQAYQAALANRGIDQSMSRLGNSLDDGLMEGFFGILKREMFYGQEHKYKDLNE LEQAIQKYIDYYNNVRIKTGRKNMTPIEYRNHVLTTLTA Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:18:55 2011 Seq name: gi|300497083|gb|AEAT01000052.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00274, whole genome shotgun sequence Length of sequence - 55737 bp Number of predicted genes - 51, with homology - 51 Number of transcription units - 35, operones - 11 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 471 - 659 92 ## LAC30SC_07625 transposase - Prom 868 - 927 4.0 - Term 876 - 927 15.1 2 2 Tu 1 . - CDS 942 - 1487 513 ## COG1268 Uncharacterized conserved protein - Prom 1521 - 1580 4.0 + Prom 1776 - 1835 5.9 3 3 Op 1 . + CDS 1885 - 2598 1297 ## COG1011 Predicted hydrolase (HAD superfamily) 4 3 Op 2 . + CDS 2647 - 2805 187 ## LDBND_0064 hypothetical protein 5 3 Op 3 . + CDS 2863 - 3690 987 ## COG0708 Exonuclease III 6 3 Op 4 . + CDS 3770 - 4309 927 ## LDBND_0066 hypothetical protein + Term 4313 - 4355 5.6 + Prom 4399 - 4458 4.9 7 4 Tu 1 . + CDS 4497 - 5405 1435 ## COG0039 Malate/lactate dehydrogenases + Term 5445 - 5484 7.7 + Prom 5428 - 5487 6.1 8 5 Tu 1 . + CDS 5524 - 6381 1273 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 6415 - 6477 11.5 + Prom 6568 - 6627 5.1 9 6 Op 1 . + CDS 6668 - 8887 3079 ## COG1372 Intein/homing endonuclease 10 6 Op 2 . + CDS 8953 - 9402 822 ## Ldb0097 hypothetical protein 11 6 Op 3 . + CDS 9404 - 9952 605 ## LDBND_0071 membrane protein 12 6 Op 4 . + CDS 9945 - 10508 851 ## COG2096 Uncharacterized conserved protein + Term 10525 - 10570 7.2 - Term 10596 - 10645 12.3 13 7 Tu 1 . - CDS 10766 - 11767 1526 ## COG1052 Lactate dehydrogenase and related dehydrogenases - Prom 11817 - 11876 4.1 - Term 11973 - 12023 6.2 14 8 Tu 1 . - CDS 12057 - 13454 1445 ## COG0277 FAD/FMN-containing dehydrogenases - Prom 13534 - 13593 5.7 + Prom 13410 - 13469 7.3 15 9 Tu 1 . + CDS 13643 - 14074 562 ## COG0242 N-formylmethionyl-tRNA deformylase + Term 14094 - 14125 3.2 16 10 Tu 1 . - CDS 14119 - 14784 986 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 17 11 Tu 1 . - CDS 15026 - 15505 1003 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis - Prom 15536 - 15595 4.1 18 12 Tu 1 . - CDS 15916 - 16221 307 ## LDBND_0078 acyl-CoA dehydrogenase - Prom 16269 - 16328 2.6 19 13 Tu 1 . - CDS 16330 - 16512 288 ## LDBND_0079 hypothetical protein - Prom 16558 - 16617 9.3 - Term 16618 - 16663 4.0 20 14 Tu 1 . - CDS 16674 - 18269 2708 ## COG1960 Acyl-CoA dehydrogenases - Prom 18324 - 18383 8.3 - Term 18388 - 18427 4.3 21 15 Op 1 35/0.000 - CDS 18431 - 20008 1248 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 22 15 Op 2 . - CDS 20012 - 21574 187 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 - Prom 21617 - 21676 5.5 23 16 Op 1 . - CDS 21700 - 23607 835 ## COG1193 Mismatch repair ATPase (MutS family) - Term 23629 - 23666 9.1 24 16 Op 2 . - CDS 23688 - 24389 913 ## LDBND_0084 hypothetical protein - Prom 24498 - 24557 7.0 25 17 Tu 1 . - CDS 24628 - 25536 1259 ## COG0583 Transcriptional regulator - Prom 25585 - 25644 6.3 + Prom 25563 - 25622 7.7 26 18 Op 1 . + CDS 25672 - 26796 1481 ## COG0620 Methionine synthase II (cobalamin-independent) + Term 26798 - 26845 6.7 + Prom 26867 - 26926 4.8 27 18 Op 2 . + CDS 26963 - 27901 614 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 + Term 27910 - 27962 14.2 28 19 Tu 1 . - CDS 27952 - 28875 1464 ## COG0039 Malate/lactate dehydrogenases - Term 29496 - 29532 7.1 29 20 Op 1 . - CDS 29599 - 30825 2063 ## COG0477 Permeases of the major facilitator superfamily - Prom 30879 - 30938 9.0 30 20 Op 2 . - CDS 30943 - 31689 483 ## LBUL_0102 hypothetical protein - Prom 31834 - 31893 9.0 + Prom 31821 - 31880 10.5 31 21 Tu 1 . + CDS 31911 - 33113 2063 ## COG0477 Permeases of the major facilitator superfamily + Prom 33139 - 33198 13.7 32 22 Tu 1 . + CDS 33232 - 35016 2927 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 35131 - 35162 4.1 - Term 35109 - 35159 6.4 33 23 Tu 1 . - CDS 35160 - 36080 1072 ## COG0583 Transcriptional regulator - Prom 36125 - 36184 7.9 + Prom 36089 - 36148 6.1 34 24 Tu 1 . + CDS 36265 - 37200 1507 ## COG0169 Shikimate 5-dehydrogenase 35 25 Op 1 . + CDS 37302 - 38516 1992 ## COG0477 Permeases of the major facilitator superfamily 36 25 Op 2 . + CDS 38557 - 39315 1238 ## COG0710 3-dehydroquinate dehydratase + Term 39348 - 39389 8.0 37 26 Op 1 . + CDS 39415 - 39933 -38 ## pE33L5_0002 hypothetical protein 38 26 Op 2 . + CDS 39979 - 40158 122 ## gi|300811910|ref|ZP_07092371.1| hypothetical protein HMPREF9264_1992 + Term 40189 - 40228 8.3 - Term 40177 - 40216 9.1 39 27 Op 1 8/0.000 - CDS 40239 - 41525 2107 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase - Prom 41572 - 41631 1.8 40 27 Op 2 7/0.091 - CDS 41683 - 43578 2668 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 43823 - 43882 7.4 - Term 43796 - 43857 -0.6 41 28 Tu 1 . - CDS 43885 - 44718 1213 ## COG3711 Transcriptional antiterminator - Prom 44753 - 44812 5.2 + Prom 44778 - 44837 4.4 42 29 Tu 1 . + CDS 44945 - 45877 1336 ## COG0169 Shikimate 5-dehydrogenase + Term 45878 - 45922 6.1 - Term 45871 - 45905 5.2 43 30 Tu 1 . - CDS 45922 - 46848 1395 ## COG0583 Transcriptional regulator - Prom 46994 - 47053 7.3 + Prom 46821 - 46880 4.7 44 31 Op 1 . + CDS 47004 - 48890 3298 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 45 31 Op 2 1/0.091 + CDS 48962 - 50203 1407 ## COG0477 Permeases of the major facilitator superfamily 46 31 Op 3 . + CDS 50223 - 50972 1136 ## COG1073 Hydrolases of the alpha/beta superfamily + Term 50984 - 51017 4.5 47 32 Op 1 . + CDS 51029 - 51937 796 ## COG0657 Esterase/lipase 48 32 Op 2 . + CDS 51975 - 52442 756 ## gi|300811932|ref|ZP_07092393.1| hypothetical protein HMPREF9264_2002 + Term 52477 - 52511 4.0 + Prom 52514 - 52573 4.6 49 33 Tu 1 . + CDS 52616 - 53362 884 ## COG1073 Hydrolases of the alpha/beta superfamily + Term 53365 - 53409 7.4 + Prom 53410 - 53469 6.1 50 34 Tu 1 . + CDS 53508 - 54698 1150 ## COG1373 Predicted ATPase (AAA+ superfamily) + Term 54707 - 54757 10.1 51 35 Tu 1 . - CDS 55492 - 55737 71 ## LDBND_0100 hypothetical protein Predicted protein(s) >gi|300497083|gb|AEAT01000052.1| GENE 1 471 - 659 92 62 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_07625 NR:ns ## KEGG: LAC30SC_07625 # Name: not_defined # Def: transposase # Organism: L.acidophilus_30SC # Pathway: not_defined # 5 55 214 264 365 101 98.0 1e-20 MIWQQRLIRLAKLAPKRDLEILKSIPGIAENTALRIISELGDIRRFNNPNQLNAFPSGLY LC >gi|300497083|gb|AEAT01000052.1| GENE 2 942 - 1487 513 181 aa, chain - ## HITS:1 COG:L1011 KEGG:ns NR:ns ## COG: L1011 COG1268 # Protein_GI_number: 15672297 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 159 1 162 182 78 38.0 6e-15 MSRKNTFQLCLLALSTALIIVGSQLAVPLPGGVPFTLQTLVIPLIAAAFGWQLGTGAVAL YLLLGAAGLPVFSGASGGIAVLFGPNGGFLWAFLPLALITGLAKGNRFYLTLAAGIALFL QLLLGAAWLAWISHLPFAAAANAAIWPFLPTTLAKLALVVALAPRLRGIFTTYAGKVGRG Y >gi|300497083|gb|AEAT01000052.1| GENE 3 1885 - 2598 1297 237 aa, chain + ## HITS:1 COG:SPy1066 KEGG:ns NR:ns ## COG: SPy1066 COG1011 # Protein_GI_number: 15675058 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Streptococcus pyogenes M1 GAS # 1 220 5 224 233 119 30.0 5e-27 MRYQQIILDVDDTLLDTEATIHDSLVQLFKSHGWEISDEFEKEFHAYNQGLWRRLEKGEL TLNQLYEIMFPDIIKKYCGVEVDGMETADEFHSYFHTGHKLLPGVKETLRYAKRLGYSLA VLSNGEQFGQEHRLELAGIRHYFDLVVTSQEAGVQKPNAEIFDYFFARSGYSSNQTVFFG DGLSSDIMGAENYGFASIWFNHRHRQKTLPVHPLFEVDNYAQFQRILKKDFAPTALR >gi|300497083|gb|AEAT01000052.1| GENE 4 2647 - 2805 187 52 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0064 NR:ns ## KEGG: LDBND_0064 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 52 1 52 52 100 98.0 2e-20 MENYFFDFDGTICESRHIYAACACTWGAFDPASLKKEKADYTVDYPLEILAI >gi|300497083|gb|AEAT01000052.1| GENE 5 2863 - 3690 987 275 aa, chain + ## HITS:1 COG:SPy0412 KEGG:ns NR:ns ## COG: SPy0412 COG0708 # Protein_GI_number: 15674547 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Streptococcus pyogenes M1 GAS # 1 275 1 275 275 389 67.0 1e-108 MRLISWNIDSLNAALTGTSPRAEMTRGVLKNLHDLDPDVLALQETKLPASGPSKKHQAAL ADLFPEYDFVWRSSMEPARKGYAGTMFLYKKGLDPLVTRPEIGAPEPMDFEGRILTLEFP DFYVTQVYTPNAGNGLVRLGDRQEWDKCYRAYLEELDKKKPVLASGDFNAAYQEIDLKHP KNNHHSAGFTDEERAGFGQLLAAGFTDTFRQIHGQVEGVYSWWAQRVRTAKANNSGWRID YWLVSNRLADQVEKSEMIETGERADHCPILLEIKL >gi|300497083|gb|AEAT01000052.1| GENE 6 3770 - 4309 927 179 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0066 NR:ns ## KEGG: LDBND_0066 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 179 1 179 179 317 98.0 2e-85 MKRLEKGVIGLILVIFAGTVIMAVSSGGQKAESSSDAFDTSEYRKAVKSTDNHHFKNMKV ELSGKKSKITGILPKTPTSVSLLKQWESKKVDLDFTASKKDSVLISKQTVKLPTPKGQEL THATVGEIGYDPYSDKVLIFASDKNYSRGFYPLGNLKRNEPSPASLSTDQDPLEFSFKD >gi|300497083|gb|AEAT01000052.1| GENE 7 4497 - 5405 1435 302 aa, chain + ## HITS:1 COG:lin1775 KEGG:ns NR:ns ## COG: lin1775 COG0039 # Protein_GI_number: 16800843 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 2 298 3 299 302 221 39.0 1e-57 MRKVAVIGMGHVGATAAFILFTHGVADELVLLDKNETKCRAEWGDLRDTLGRNDFYVNVK WGDWKELADADLIITAFGDVAASITTGDRFAEFPVNTKNAVEVGQKIKDSGFKGVIINIS NPCDVVTSILQKVTGLPKSQVFGTGTFLDTSRMQRVVGEKLGQDPRNVSGFNLGEHGSSQ FTAWSTVWVNNRPAKDLFNEAEKEEMDRLSKDNAFMVGKGKGYTCYAVATCAVRLARAVF SDAKFYGPTSCYVESLGTYIGYPSIVGKHGVEEVPVLDLPADEQAKLEASAKKLKDSLAS LE >gi|300497083|gb|AEAT01000052.1| GENE 8 5524 - 6381 1273 285 aa, chain + ## HITS:1 COG:L66233 KEGG:ns NR:ns ## COG: L66233 COG0656 # Protein_GI_number: 15672250 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 6 285 3 281 281 309 56.0 3e-84 MTLHGLEDTYELANGVKIPVIGFGTWQTPDGDVAQEAVETALNAGYRHIDTAAAYGNEAS VGRAIKRSGVKRSDLFVTSKLWNGSHSYEGAKTAIDDSLLKLDTDYLDLYLIHWPNPVAI RDHWAEGNAEAWRAMEEAVQAGKIRAIGVSNFRRHHLEALLKTAEIKPVVNQICLNPNDL QAEVTAANKEYGLLSEAYSPLGTGGLLGNETIKAVGSKYGKSSAQILIRWSLQHNFLPLP KSVHPDYIKANAEVFDFALTADDMAKLDGLQGIGQPVLDPDQAEF >gi|300497083|gb|AEAT01000052.1| GENE 9 6668 - 8887 3079 739 aa, chain + ## HITS:1 COG:all4035 KEGG:ns NR:ns ## COG: all4035 COG1372 # Protein_GI_number: 17231527 # Func_class: L Replication, recombination and repair # Function: Intein/homing endonuclease # Organism: Nostoc sp. PCC 7120 # 33 319 27 275 1172 80 27.0 9e-15 MSEEISLSAEFIDRVKASVKPHWGKLGWVTYKRTYARWLPEKGRSENWDETVKRVVEGNI NLDPRLQDSPSLELKQSLTEEAERLYKLIYGLGATPSGRNLWISGTDYQRRTGDSLNNCW FVAIRPQKYGDSKIVPSYLGKQEKAVSMPFSFLFDELMKGGGVGFSVARSNISQIPRVDF AIDLQLVVDETSESYDASVKVGAVGKNELVQDADSIYYRLPDTREGWVLANALLIDLHFA QTNPDRKQKLILDLSDIRPYGAEIHGFGGTASGPMPLISMLLDVNEVLNNKAGGRLTAVD AADICNLIGKAVVAGNVRRSAELALGSNDDQDFISMKQDQEKLMHHRWASNNSVAVDSAF SGYQPIAAGIRENGEPGIVNLDLSKNYGRIVDGYQAGIDGDVEGTNPCGEISLANGEPCN LFEVFPLIAEEQGWDLQEVFALAARYAKRVTFSPYDWEISREIIQKNRRIGISMSGIQDW FLTRLGNRVVTGFKDDFDPETHEAIKAPVYDKRAIKMVDQLYKAVVKADQAYSKTLGCNE SIKHTTVKPSGTVAKLAGASEGMHFHYGAYLIQRIRFQDSDPLLPALKACGYRTEADIYT ENTTCVEFPIKAVGADNPNFASAGTVSIAEQFATQAFLQTYWSDNAVSCTITFQDSEGDQ VESLLRQYRFITKSTSLLPYFGGSLQQAPKEPIDKETYEKRSQEITGNVEEVFSQLNSDV KDLELVDQTDCEGGACPIK >gi|300497083|gb|AEAT01000052.1| GENE 10 8953 - 9402 822 149 aa, chain + ## HITS:1 COG:no KEGG:Ldb0097 NR:ns ## KEGG: Ldb0097 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 149 1 149 271 133 93.0 2e-30 MKKKILAVVVALAAFVGLFASQPVQKQSIQAAKTTKTAKKTTKKAKAKQISVTYTLKDTT KAKNKQTLAKKTFKVKKGTTVFTVLKKAWKVNYTKSSNGVFITKIKGLGNEKKKLYWTYT VDGKMVKVAADKQKLTKNKSKVVFTLKKY >gi|300497083|gb|AEAT01000052.1| GENE 11 9404 - 9952 605 182 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0071 NR:ns ## KEGG: LDBND_0071 # Name: not_defined # Def: membrane protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 182 1 182 182 292 98.0 5e-78 MQTKERNQLQRLTLLALLTAMCVVLRIFKIIDIPNVQPVTDIIMLTTLELGAGTGILLAI LVMVISNIFLGFGIWTLPQIFAYAACALTVALFARLLPLKSRKFFWLQELLAGFLGLEYG FFVSLGMAGWGGWAAFIAYWVSGLTFDLYHAAGNLAFYPILYLPLVLGLDRFKKKVGWKQ NA >gi|300497083|gb|AEAT01000052.1| GENE 12 9945 - 10508 851 187 aa, chain + ## HITS:1 COG:BS_yvqK KEGG:ns NR:ns ## COG: BS_yvqK COG2096 # Protein_GI_number: 16080368 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 2 175 1 177 193 125 39.0 4e-29 MLKVYTKVGDQGKTKQVTGKMVAKYDPQIQTLGALDELQSWLGVTVANLSPACQGLEEKL IKLEREMYELQADLVVKRHHTITLAEVTYMEEQIDAWTEELPEMKEFILPGGSKTSANLQ YARALARTSERVCVLYADESGEVKSDSLKYLNRLSDYLFVMARYANLLEGVADVKSKPAR PRRRPKK >gi|300497083|gb|AEAT01000052.1| GENE 13 10766 - 11767 1526 333 aa, chain - ## HITS:1 COG:SA2346 KEGG:ns NR:ns ## COG: SA2346 COG1052 # Protein_GI_number: 15928138 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 322 1 323 332 219 37.0 5e-57 MTKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKLLTPETAALAKGADGVVVYQQLDYTA ETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILR QDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVIAYDIFRN PELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDKSIAKMKQDVVIVNVSRGPLV DTDAVIRGLDSGKVFGYAMDVYEGEVGVFNEDWEGKEFPDARLADLIARPNVLVTPHTAF YTTHAVRNMVIKAFDNNLELIEGKEAETPVKVG >gi|300497083|gb|AEAT01000052.1| GENE 14 12057 - 13454 1445 465 aa, chain - ## HITS:1 COG:BH2730 KEGG:ns NR:ns ## COG: BH2730 COG0277 # Protein_GI_number: 15615293 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Bacillus halodurans # 17 462 2 456 470 258 35.0 2e-68 MGLNFSAYNTDEIIDFLQEQVKDGIVKTDKDSLQTASYSQNLPGQHGLALALVEAGSIAD VQGVMRAARRFHLPVVSQNRFTSTVVGADAVDHAIILSTAKMSKILELNAEDAYAVVQPG VINNDLDQAARKQGLFYAPDPASKKMSGIGGNVATNAGGLSGVRYGSTRDNVLGLKVVLA DGRLLDLGGKTSKQAFGYNLTQLFVGSEGTLGTIVEITVKLLPLPLGESLMGLAYFKDMH TLAEATKDLRMSGIYPAMLEAMDSHTLQAVSEFRDNKEMAGRGAALIFRVDSISDEGKQI VKNIMDKYHVTDVQLATDPAEQDKIISVRQDMLPAIFTGRSAVMEDMAVPTSRMAELVDT IQALSDKYPELEIFTAGHAGDGNLHPTVTWSKDAKEMPESVNIVLHEMFTKALELGGTIS GEHAVGMLKNQWNNVELGEDVDWIQHQIKSLFDPMNLLNPKRKID >gi|300497083|gb|AEAT01000052.1| GENE 15 13643 - 14074 562 143 aa, chain + ## HITS:1 COG:SP1549 KEGG:ns NR:ns ## COG: SP1549 COG0242 # Protein_GI_number: 15901392 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pneumoniae TIGR4 # 4 143 3 136 136 126 47.0 1e-29 MTVQKIIHDPLNLSQPAAKAAANDRQAAQDLLDTLLAHRESIDGLPPAAGLAANMIGVNK AIIAVNAGFLPIVMLNPKIVKRSGHYLAEEGCLSLPGERPADRYEEITVKYQDMDLKEHE QAFTGFVAETIQHEVDHCKGKLI >gi|300497083|gb|AEAT01000052.1| GENE 16 14119 - 14784 986 221 aa, chain - ## HITS:1 COG:PA5505 KEGG:ns NR:ns ## COG: PA5505 COG1464 # Protein_GI_number: 15600698 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Pseudomonas aeruginosa # 1 210 54 257 260 127 38.0 1e-29 MKAFTDGPSLLRATSDGSINVSAFASWAYLEAYNKSKSNTGQQVALATTYLEPMGIYSSK YKKFSDLPKGATIALANNAANEARGLLLLQSAGLIKLKKNFDSASGNTNDIVSNPKKFKF KLIDDTTGPRIIKSVDAVLIGNTIALAGNLNVLKDSLYHEKIDQSTKNNINVLATAKKSK NNAAYKKLGKLYHNKQIQKWIAKKYSGTKVEVNKPVSYLTD >gi|300497083|gb|AEAT01000052.1| GENE 17 15026 - 15505 1003 159 aa, chain - ## HITS:1 COG:SPy1642 KEGG:ns NR:ns ## COG: SPy1642 COG1854 # Protein_GI_number: 15675515 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Streptococcus pyogenes M1 GAS # 4 157 7 160 160 251 72.0 3e-67 MAKVESFELDHTKVKAPYVRLITVEEGPKGDKISNFDLRLVQPNENAIPTGGLHTIEHLL ASLLRDRLDGVIDCSPFGCRTGFHLITWGEHSTTEVAKALRDSLKAIRDDITWEDVPGTT IESCGNYRDHSLFSAQEWCNDILKKGISDDPFDRHVVED >gi|300497083|gb|AEAT01000052.1| GENE 18 15916 - 16221 307 101 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0078 NR:ns ## KEGG: LDBND_0078 # Name: not_defined # Def: acyl-CoA dehydrogenase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 62 101 1 40 40 78 100.0 8e-14 MVLNSLLISIFTSGLLLGFILAVPFAPKLQEIRDFFRYRIGYWNILIPIGIIIVTNAAAY SMLNIAGLALLGPFDLIFIGATIADYLRDRKFNSGKQKQDD >gi|300497083|gb|AEAT01000052.1| GENE 19 16330 - 16512 288 60 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0079 NR:ns ## KEGG: LDBND_0079 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 60 1 60 60 102 100.0 7e-21 MILTEVAYNIWPVLLAQLVGIIIFFVIAYYFAKFLVIKLTPLVLKIKREEEDKRDRGQDD >gi|300497083|gb|AEAT01000052.1| GENE 20 16674 - 18269 2708 531 aa, chain - ## HITS:1 COG:FN0783 KEGG:ns NR:ns ## COG: FN0783 COG1960 # Protein_GI_number: 19704118 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Fusobacterium nucleatum # 9 355 14 369 381 197 35.0 4e-50 MTNETELLQAVQQLADKDVAPFDLQIDCQAKLPNGLFQKIVDLGLLRAKIPKEYGGLDVP AATAGKIVNILAKANASVGVMLEGHYKSCDQLAKYGTDAAKKRYFAWGAQAILGFSNTEP EGGSDPSKHQSYAVEKDGRWIINGDKVMITNGTLAQVYSVNVKTGPDEYSVFIVDKGMPG FSFGYVEKFIGLRGIPCGEVVMNQIEVGPENMLGKRGQGLEIANNAHDDARYLMGAVLTG IQEHALDIAKNYAAKRKSGNTLLKDMQVTQYKISKIATNKELTRLVYEEAARRKDAGLPY MEQSAMAKCFGSKAAVESCDLTLQIMGGYGYSAEFSPEHLVRDARAMEIAEGTIEKMYTE ISNAEMADVPSQEVARKQADLTDLDQILPLLEAAKTPAGAVDAVSSPSQAAGLPKAKIVL ALGRGANQPETIALAKQVAEKLGAEIGVTRPMVGSDFNRGQQLGVNGHKIKPQVLINLGI AGAPQYTFTVDHAENIISVNTNPNAIVFEGSDYHYVGSTYDFLKELLNRLG >gi|300497083|gb|AEAT01000052.1| GENE 21 18431 - 20008 1248 525 aa, chain - ## HITS:1 COG:L162870 KEGG:ns NR:ns ## COG: L162870 COG1132 # Protein_GI_number: 15673504 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Lactococcus lactis # 16 524 14 524 529 119 24.0 1e-26 MTFKEFYLRKPVKSSLLFLAAALSSLLLVGSSYALTLEFNALRNRQPVLFAQMLALQLAC LVFSALLTYYGNLSLEQLIQSYLQQIRQELALHIFNDGQAHDPAQAQNQLLKEGDLLTVS YLRNIYSSFKAGMTVLASGDALLSFHWSLFIACLIFALMQIYLPRLLDRQLNHANHRLAA QNQAYLKVLGDWLLGLGDLHRCLSLAWFKEKAGLAAKELEDAHVHKSAVSAHLDYLNQLV YSLGSSLILLLTAFLVIRHWTAFGLLSSIASFNSDFFGNLQNAADYLGEISGSRQLRQDL LKQREAVPEKKETGQAPAAFASSPLTIDFNGLTLAYPAIKLQPGEKVLLTGASGRGKSTF FKLLLGEVKAASGEIHYLDQKGKVIQPNLSQIGYLPQDPQLFPGSVAENMTMFNPALSDQ DLLRQTADQVNLSEDLRLWPAGLDTRVAVENSNVSGGQRQKIVLARSYLYHSQLLLIDEG TSAIDQTARREVITRLLKTDKTIMFVAHNLTAESRRLFDREIQLD >gi|300497083|gb|AEAT01000052.1| GENE 22 20012 - 21574 187 520 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 289 501 249 481 563 76 25 3e-13 MTLRKLINSNRGRFAIIFALLIMTQVIDVTSTYLFSPMVNQVSAGRFNIFCSLLLIRFAL ALVLNLAFNGANYLFSKQTQQYLHGVRDRLADHYYQQPAGVSEMTNHFSQDLDTLTYDYA TVLFYLICDVINALMVAASLFSFHWLLLLASLLTTVTSFAIARLLEKYSNQDTDQLSVAN QHFLATIAQWTAGLAELRRYFAKGPYQKALLKSGQELADRQVSRRKINSQIQCLQSISNA LGTVSIPLIAGFLFFKGQMSLGGVIAAGYFASSIFSVLENIAGSYSYLNSTKSLRQRLSR LQESKKNDNLQPVNRMAQIEIKQVSLTHGKQLLSYPDFTIHAGEKILITGDSGSGKSTLL KLLLGNLQAEKGQIIFKDAAGQAFQPDSYSIGYLAQDLVLFPATLAENVTMHTPGLSANP KDYLETVGLQLDPQRQITPDDLTLSGGQKQKLALARTLSHGFPLLLLDESLSAVDRAGQD QILRTLCQLPATVIFVAHNLSPEQKARFDREISLAKREHV >gi|300497083|gb|AEAT01000052.1| GENE 23 21700 - 23607 835 635 aa, chain - ## HITS:1 COG:CAP0099 KEGG:ns NR:ns ## COG: CAP0099 COG1193 # Protein_GI_number: 15004802 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Clostridium acetobutylicum # 9 623 8 626 629 374 35.0 1e-103 MTEIFENSQLQFAQVLTQVASYAKSPEARNLLLQAQPLTKPAAVTHLLDETEEGTRLLER SLQLPFVSSDSLLPLINRAQKGLLLSADDLEKVADYLRVCELLQRFLYREKDLVPILNSY GEELQLFPKLVEQIYQSIEHGQVADSADRDLRRLRRQEQELSQEIKDTAGKLLQSKNVSQ SLQEQRLVEKDGHLTLPVKSSFKKAIAGRIIAYSANGQTAFILPRKLDQLSSEKIAVKGQ IEAIEAMILGQLTATVYEESHGLLRNIDVVAAIDQIMARARYSRELNGKRARLNQTNQLL LRGMRHPLLKNPVPLDLEIKPPVRGLIITGPNAGGKTATLKNCGLAIMMTEIGLFLPSRE ICDIPVSQQIFSQIGDQQDLDNSLSTFSAEMTNIAKIVTHAQSRSLVLLDELGSGTDPDE GAAIAISVLQALQLKGCLVLATTHYSRIKDYAVKHPNYRTASMDFNADTLTPTYRLLLDQ VGQSRAFWIAQKVGMPKEIIDQAQKVLAGQLPLSSSTVVLKEKATSKIVKTHFCKGDVVY AGDLEREGIFYALEANQTLAKIFVNKQFSVIPVKRLKLRRKAADLYPEGYNLNLLFISDW QEYKFNKDLNRGSKKAYKKLVKHEQEVKSNSSKNS >gi|300497083|gb|AEAT01000052.1| GENE 24 23688 - 24389 913 233 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0084 NR:ns ## KEGG: LDBND_0084 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 233 1 233 233 429 98.0 1e-119 MGWILLLLVIIICVGTYINSRNEKKKQSQLWAQRQKDSNVPPMPITILETVDGASKLVVK NDSSVYFTQYEKGKAPWPGGVENFSVYYDKDTKHLLILSLVQENDNIDFGEVDPEATEKF LAVFQSVGGHLAQHYELLTLNKVDSSDLNLAVKSFPAKVYFYTEKSVIDGKKRLYFSPDP TSTAYKLLGVAVSDGSNGEKSVELSLETFKGVKYSIYTTLSEAGVKDLQENFA >gi|300497083|gb|AEAT01000052.1| GENE 25 24628 - 25536 1259 302 aa, chain - ## HITS:1 COG:SPy0898 KEGG:ns NR:ns ## COG: SPy0898 COG0583 # Protein_GI_number: 15674920 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 1 298 1 298 301 316 51.0 5e-86 MRIQQLLYLQKVVALGNMTEAAKELFIAQPTLSSAIKQLEKEMGITILIRGKKGVSLTED GREFMQYAQQILDQVQLLERRYGDQSSAPKIFSVAAQHYAFAVDAFVQLLKEIGQSDYQA SLKEMRTYEVIEDVANLHSEIGIVYLSRYNRQVMENSFQEKELSFMPLFKAHPHVFLYRN HPLAGKKSISLADLLPYPKLSYDQGQHNSFYYWEETLADQHSPKSIIVSDRATLFNLAIG LNGYTISSGIINADLNGDDIIARPLISDEYIEIGYLTNRLHQLSSIGQKYLGYLRESIEK NA >gi|300497083|gb|AEAT01000052.1| GENE 26 25672 - 26796 1481 374 aa, chain + ## HITS:1 COG:CPn0143 KEGG:ns NR:ns ## COG: CPn0143 COG0620 # Protein_GI_number: 15618067 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Chlamydophila pneumoniae CWL029 # 6 370 13 373 374 313 45.0 4e-85 MSFPRYDIVGSFLRPAALKEAREKFARGEISQAELTAVEDQEIKNLVQKEVAAGLKVVSD GEFRRSYWHLDTFWGFGGVEHVRADHGYFFHDEETRPDAAKLVGKLTYEAGHPDVAAFDF LKPLADAAGVEARQSIPAPAQLYCELICRNDELIAATDAVYSDRAELAKDVSKVYRELIL DLYKHGARDIKLDDCTWGVLVNDSFWHAFDEGHLKREEILQLYKEINENALVDLPEDLRI TTHICRGNYDSTWASEGGYGSAAPYVFKEKGVEAFYLEFDDDRSGDFAPLAEVPADKVVV LGLVTSKKPELEDPEALKARIKEAGQYHPLATTALSTQCGFASTEEGNHLTDEEQWAKIK LVIDTAKEVWPDAE >gi|300497083|gb|AEAT01000052.1| GENE 27 26963 - 27901 614 312 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 7 306 7 308 323 241 47 9e-63 MKKYAFGVDIGGTTVKIGLFETNGELSQKWEIPTRKEGNGAKILPDIAASLNDKLKELDI PKEEVAGIGIDVPGPILDDEIVNRCVNLGWGVFNVAEKVRKLTGLDEVKVANDANAAALG EMWQGGGESHQNVVMVTLGTGVGGGIISEGKIVAGAFGAAGEIGHMLVNKDETQLCGCGK KGHLEQYASATGIARKAKELLAESGEESSLRGVDQLDAKAVFDAAKEGDKLALEIVDFVG ETLGTALASISCVFDPEVYVIGGGVSKAGQILLDTVQKHFVDAAFHASEGTEFALAQLGN DAGMYGAVKTVL >gi|300497083|gb|AEAT01000052.1| GENE 28 27952 - 28875 1464 307 aa, chain - ## HITS:1 COG:lin0242 KEGG:ns NR:ns ## COG: lin0242 COG0039 # Protein_GI_number: 16799319 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 3 304 5 306 313 283 48.0 2e-76 MSRKVLLVGDGAVGSNFANDLLQTTRVDELVICDLNKDRAAGDCLDLEDLTYFTGQTKLR AGDYSDAADADVVVITAGVPRKPGESRLDLIKKNEAILRSIIDPVVASGFSGIFVVSANP VDILTTLTQKLSGFPKKRVIGTGTSLDSARLRVELAKRLQVPIESVNAWVLGEHGDSSFE NFSSAVVNGKPLLDYPGMTKEALDEIEAHVREKGGEIIGKKGATYYGVAMMLAKIVAAIL ENNDLALPLSAPLHGEYGIKDEIYLGTLAIINGQGISHVLELPLNDSELAKMQASAATMK ATLDSLG >gi|300497083|gb|AEAT01000052.1| GENE 29 29599 - 30825 2063 408 aa, chain - ## HITS:1 COG:SPy1340 KEGG:ns NR:ns ## COG: SPy1340 COG0477 # Protein_GI_number: 15675278 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pyogenes M1 GAS # 3 399 2 398 406 328 48.0 1e-89 MDNTSSMSTNQKWVLASMSSGFLLENMDVMFLSFSLSEIIAQMHISSAAGGWIGTFTNLG MFFGGALFGLLGDRIGRVKTFSYTIFLFAIATGLTYFAHNITALYALRFLAGIGAGGEYG VGIALIAENFQANQIGRASSVAAVGGQIGSIVAALLAAWIIPDYGWNTLFLFGVVPVVLT YFVRRHVKESDEFLAAHKKAEETSEKISFGRLFETPRLALQTLGLMLMTIVQIAGYFGLM NWLPSIVQKKQGLSVSGSSYWMIATIIGMSIGMMVFGTIMDKICPRWAFGIFLLGSAVVV FAIVNVTSYWAMLLAGALTGFFSNGMFGGYGAVISQLYPTEIRSTANNLIMNTGRAIGGF SSVIIGALMDHYNLYVVMGFLSALYIISFLVMISLPGLREIQAKKRAA >gi|300497083|gb|AEAT01000052.1| GENE 30 30943 - 31689 483 248 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0102 NR:ns ## KEGG: LBUL_0102 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 41 219 1 179 180 330 96.0 5e-89 MDICNSHFSLHVFLSFFKPKARSGFDPLPRRLAALTFGLVLNAFGNGITISSNIGTAPWG ASEVNLTHIFHTSIALAMFLTGFLVAVINQLLMRRFDLPRFLGEVVFITCFSYFINLFTS LFSALGLPDLPLPWRLVAGLLGIMTLGCSISFHQRANLIMHPNDDTTNILRFMYCKNKVV RAQLINFSVPLLLTGICWLATGKVYAVNIGTLLCLLINGPMIALADQHLWHNLHHNIALP KAISDRAE >gi|300497083|gb|AEAT01000052.1| GENE 31 31911 - 33113 2063 400 aa, chain + ## HITS:1 COG:lin2339 KEGG:ns NR:ns ## COG: lin2339 COG0477 # Protein_GI_number: 16801402 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 7 388 5 389 402 255 37.0 1e-67 MSVKKHQYAATASTVYFSYFMMGIGMSLLAQFKPQFASLWHSSISGVLSVVSAVGIGGIV SILITGPISDHFGRRASAVIGHLLWAIYYIGLLYAPNFAVAYIIGILGGIANSFLNASNF PALMEIFPESASVAGLMSKFAINIGQFCLPLAILLGTALGSGYRTVFMLAGILYIVMALI LAFSPYPDQVTGPKKQEKAKHDFNLGVWSLVLMGFTSTAAFLLWINTYQELAKSYGIANP SSLQSVYAVGASIAVLFNSFIIKKGVKEIDKGVKEIDILIWYPLLSAAGLLLAYFINAPQ ILYLTSLAVGFFAASGLYQLGQSVLGQIYPDMKATVQSWGGFFSAFANFAIIQLAASITA RTGAAAPRLILLLNVANMLVGTALAFVVKRVDQKKQGKAD >gi|300497083|gb|AEAT01000052.1| GENE 32 33232 - 35016 2927 594 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 67 574 1 483 484 122 25.0 2e-27 MSKETLKAQAQGRNGEIDFDIEIENREIADIKVTKSSETKAVFNQAFGQLRDNVLAANSF NVDAVSGATIMTKAILESGQKALDEAGLMPAPRPVDRSHKAVTLDVDVAVVGSGMAGLIA ACRALSMGKKVVVLEKNGYVGGASILNGSNVTATGSKLAKKLFGSAAEEDSAQRLFDDIT RECRGTNYPEMSHLLADNIGKAIDFITDFAGLTYQKAETQTIEHSVNRQVEMPSQSSYEV VTKVANAFKAKGGILLTDARVEELKKSPAGVLTSLVAEGKHQTTTVNFKSLVLAAGGWGA KDFKEHKTDIPYYGPMTSTGDYFGFAKGMNLVTRNLDWYKVYPHGLEVEPGIAKLTTYST KEASDMGAIFVNRAGKRVVNESLPYTHFRDAIANEKDKICFVLMDQRIWDRYYELMLKYG FTAEEVQGFFANDGKKSPVLVKGDLATVAQKAGIDYGNLKETFDHYQEYAKAGRDPEFGR DAKFLHELEGDTYYVIEQKLRFCTTMGGYEATKDMQLLDNDFKPVANFYAAGELVGGANG KDSMPSMMNSWSYASGFVAGTAAADNADNYAVDVVTSASHAPAPKPEATSGASH >gi|300497083|gb|AEAT01000052.1| GENE 33 35160 - 36080 1072 306 aa, chain - ## HITS:1 COG:lin0491 KEGG:ns NR:ns ## COG: lin0491 COG0583 # Protein_GI_number: 16799566 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 299 1 296 297 235 41.0 7e-62 MNIRHLRFFVELAKTEHMAKTAEKLGISQPSLSYAISSIEEELGVPLFEKEGRNIRLTNY GKIYLEYVKSGLSDLDRGGEYIAELLDVNRGHIRVGFTFTMGQDLIPQLICKFKQEKDTK DITFSFVQGTTDDLVNQLVNDELDLVISSAPDLPGLEDKVDISHLVNQEMLAVVPFSNPL AQKDSVSLADLAKYPMIYYSKSSGLRPRLDKMFAEAGVKPKIIMESMEDHTIIGFVHWGY GVAIVPHLPQLDPRTVKLLHIDENVGVHPIFVVKKSDHFLTPAVTRFEQFIKSYCRKHYN NEHKLV >gi|300497083|gb|AEAT01000052.1| GENE 34 36265 - 37200 1507 311 aa, chain + ## HITS:1 COG:lin0493 KEGG:ns NR:ns ## COG: lin0493 COG0169 # Protein_GI_number: 16799568 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Listeria innocua # 21 307 5 290 291 305 51.0 6e-83 MADERNNEIEETKIQGVNGPITGWLDGHTILVGLMAYPIRHTMSPTMHNNAFAKLGLNGA YLCFEIDNEKLPGAIDAIRTLDMRGSNISMPNKKKVIPYLDKLDKTSQMCDAVNTIVNEH GVLTGYTTDGMGWLRALKKDGQDVKGKIITLAGAGGAATPIAVTASLEGAKEIRIFNLDD DKWAQAVKNVETINKETDCVASVHHLEDKEDFKQSIAESDIYCDATSVGMNPLQDQTLVE DPSWFHEDMVVSDTVYAPRKTKLMEVAEKAGVKHIYNGIGMMIEQGAAAFKLWTGKEMPT DYIQEIMDANK >gi|300497083|gb|AEAT01000052.1| GENE 35 37302 - 38516 1992 404 aa, chain + ## HITS:1 COG:STM1361 KEGG:ns NR:ns ## COG: STM1361 COG0477 # Protein_GI_number: 16764712 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 3 396 2 389 403 308 45.0 1e-83 MKKNKYMMTAFMLYMNYFVHGMGVIIISQNASSLAQHWGTTTTGAIAVVSSLGIGRIINL LISGILSDKFGRKPFVQLGIVFYLVFFVGLLFSKSVTVAYILGICAGMANSFLDTGTYPA LMEIFPDAKGTSNVVLKAFISGAQFLLPFIVSGLAAAHAWYGWSIVIPAAILVITFIYFL KGAFPDSKEVAEAEEKRAAEAEAAAAGDKPAVKSNKWVDGTLFILYGYISQATFYMVSQM LTQYGQQISHMSDGVAHALVSWYSLGSICCVLFTAVIGSKFKEVQLVPIYTLGAFIAIFL MWAYPTSAVLMAVLAFAVGFFAAGGVMQLGLTVMANFFPAGKGTVTGFFYTAGSIASFTI PLVINALPGMKEVMFFDVIVALLGFVDTTIIAIRYKKLFGSLKK >gi|300497083|gb|AEAT01000052.1| GENE 36 38557 - 39315 1238 252 aa, chain + ## HITS:1 COG:STM1358 KEGG:ns NR:ns ## COG: STM1358 COG0710 # Protein_GI_number: 16764709 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Salmonella typhimurium LT2 # 1 243 1 243 252 211 47.0 1e-54 MTTVKVRNIVLGEGLPKIAVPNVGVTEEEILASAKEIAAAKPDIMEWRIDYYEAGIMDNE KLIATAKALRDVVGELPILVTFRTKNEGGVLELGEDEYLDLVATVVTNRLGDAVDIELFH DEERVKDLVKQAHNYNVVVIMSNHDFEKVPAKDVIEFRLKKMADLGADVPKLACMPHSAD DVLTLLSATNDARKALSTPIITMAMADLGKVSRIAGQVFGSCLSFGAVGKTSAPGQLSIE DLRNAENYLELH >gi|300497083|gb|AEAT01000052.1| GENE 37 39415 - 39933 -38 172 aa, chain + ## HITS:1 COG:no KEGG:pE33L5_0002 NR:ns ## KEGG: pE33L5_0002 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_ZK # Pathway: not_defined # 46 142 189 281 301 64 37.0 1e-09 MKKVDIVTIERLYPNESIRTDGTTITTPFTASFIQLPAQPNEKIINFKSWIDEMDVRNGQ TSVKSGSVFVVMPTSGGGYSGQYDGEKVKTGAHVHCNRFNGTKSDHRYWKKSNPKAWIDF YHSDCDYHASKYGCADFGNMSKCDGLDKRGKGVKDCSSWSGNPKHKNWPKTC >gi|300497083|gb|AEAT01000052.1| GENE 38 39979 - 40158 122 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300811910|ref|ZP_07092371.1| ## NR: gi|300811910|ref|ZP_07092371.1| hypothetical protein HMPREF9264_1992 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] hypothetical protein HMPREF9264_1992 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 1 59 1 59 59 75 100.0 1e-12 MPISSFVGILVLLVAGVAIGIAVYGWVSHKRGLAVEALLAGAIFLGLVYWVGSNFIGSM >gi|300497083|gb|AEAT01000052.1| GENE 39 40239 - 41525 2107 428 aa, chain - ## HITS:1 COG:L121426 KEGG:ns NR:ns ## COG: L121426 COG2723 # Protein_GI_number: 15673653 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 15 428 58 476 477 475 52.0 1e-134 MTFPEGAEPAVLAGYYYPSHTATDFYHYYKEDIKLMSEMGFKCFRLSINWARIFPNGDDA QPNEKGLEFYEKVFQECHKYGIEPLVTLSHYETPLNLSIKYNGWTSRKLIDFFVNYAKTV MQRYKGLVKYYLTFNEINMMSLAPYMAAGILTDDAQSKAQGAHNQFVASALTVKAAREID PEIQVGQMLAYGPVYALTADPKDQLKALKQNDATLFYSDVQTGGRYPDWILKKYEAEGIK LDDEDSDYELLAQYPADFLSFSCYSSSVTTTHETDDTAGGNLAMGVKNPYLKTNDWGWTI DPDVLRIALNQLWDRYHKPLWIVENGIGVKDQISEDGKIHDPERISYLQQCISSMRDAIN IDGVDLMGYEMWGCIDLVSAGTGEMRKRYGFVYVDRDDKGEGSLKRIPKDSFYWYKKVIA SDGEDLSD >gi|300497083|gb|AEAT01000052.1| GENE 40 41683 - 43578 2668 631 aa, chain - ## HITS:1 COG:L90678_2 KEGG:ns NR:ns ## COG: L90678_2 COG1263 # Protein_GI_number: 15673442 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Lactococcus lactis # 95 450 5 368 386 296 45.0 1e-79 MAKNYDELAKDIVAHVGGEENVSSLKHCVTRLRFVLKDESKADTDYLKKRNGVITVAQAG GQYQVVIGNEVTDVYDAVLRNSHIKGVGEVAEDDAEDAPKGNLFDRFVDLISSIFQPFLG ALCAAGMLKGITALLAATGMPATNGIYIIFNAMGDGMFQYLPFFLALTAARKFKLDQFTA LALSGAMLYPTLTTTVKATTNFFGLPIKLPSGGYFQTVVPIILAVWFASLVEKRMKKWMP TDVKMFAVPFFTLLISVPLSILLIGPVANTLSAWVGVAFQAIYKLSPMLYGAVLGGLWQV LVMFGLHWGLVPLAIMDLAQKGWSVLLNPSFAVCFAQTGALAAIMIKTKEKKVKELATPA LISSIFGVTEPAIYGITLPMKTPFIMTCIAGAIQGIYCGLTNVTGYAMGGLGIFLFPSYI NPKTGSFTSVINLAICSVISLILGFALTMMTKIPTLYGEEETASNTQTTETAPAEGSSVT VASETILAPVAGEVCPLSEVKDEVFSSGAMGQGLAIKPREGLLKSPVDGTVSLVFPTGHA IGLKSKTGAEILIHIGMDTVELNGEGFEVLVSKDQEVKAGQPLVKFDLDAIKAKGYDLTT PVIITNSKSYQEIGDSKRDAVKAGDQLLALS >gi|300497083|gb|AEAT01000052.1| GENE 41 43885 - 44718 1213 277 aa, chain - ## HITS:1 COG:lin2530 KEGG:ns NR:ns ## COG: lin2530 COG3711 # Protein_GI_number: 16801592 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 8 277 9 277 285 141 33.0 2e-33 MEFIKNYNNTALVKDSAGKDWVVIGKGIGFGLKKGMPVDESKIERRFLAQDEIDQVEPEV VKGIDPQSFEATDKVCEMLENKYGISFTGYQYFALADHIDFMIKRTLDGAELNPMSGRWE TKTLFPKEYTAAKEALAIISATVHLKLDPSEAISLTYHFINAESDGSKLQDTMRMTRYLG GIVNIVQYQYGITLDTDSFNYERFITHLRALIIRHLTGKESHSELDPALLQLMVAKYPKE KDTVDRIAQYLKREADWTLSADDQTYLILHIWRVTHR >gi|300497083|gb|AEAT01000052.1| GENE 42 44945 - 45877 1336 310 aa, chain + ## HITS:1 COG:lin0493 KEGG:ns NR:ns ## COG: lin0493 COG0169 # Protein_GI_number: 16799568 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Listeria innocua # 17 307 1 290 291 304 51.0 1e-82 MTDERNNDILPVKISGITGPVTGWLDGHTILLGLFADPIRHSVSPTMHNNAMAKLGLNGA YLCFEIGPDRIGDAVKALRTLDMRGVNVSMPNKQAIIPYLDKLDPAAEICGAVNTVVNDH GFLTGYTTDGTGWLRSLQEDGQDVKGQVVTLAGAGGAAIPIAVATAMGGAKEIRIFNIHD RNWEPAKDKVAAINEATGCACSLNPMEDKEAFKQSIAESGIYCDATGVGMPPLDDLSLVE APSWLHEDMVVSDTVYEPRETKLMRIAKEAGVKHIYNGLGMVVGQGAESFKLWTGKEMPT DYIQEIVAKA >gi|300497083|gb|AEAT01000052.1| GENE 43 45922 - 46848 1395 308 aa, chain - ## HITS:1 COG:STM4270 KEGG:ns NR:ns ## COG: STM4270 COG0583 # Protein_GI_number: 16767520 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 8 269 6 259 295 102 25.0 1e-21 MNDPDIMLNYLETLLKESNFTRAAEHLYISQPYLTQLIKRVEKKLGTTIINRDKVPFTLT ESGQIYYQYLENISAQRHQLANALERFSNQQEEVIRIAILESLGTFLLPKILPAFLTKHP QVKIQIAEGFPHTSEDRLLGGDVDCYMGQTPETVAQGIDTYINGGEVYYIVIPENSKFYL KDHFILDPADYDPKELLQQPFVLSNGESAIRHQVNGLFHYFRVQPNIRMTSNSVITATNL AVNGVGFTISSASILKRLEHLPINLYPLDPRQIKLTYFIGVRRGADLSPALKDLVEAFQA AELQEKIR >gi|300497083|gb|AEAT01000052.1| GENE 44 47004 - 48890 3298 628 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 70 612 1 476 484 229 33.0 9e-60 MSMKSGTYKVKAKGHSSSFMPMEVTIENDKVADITVDSAGETSGIADEVFKRLPKAIIDG QTLNVDAVSGASISSQGVIDGVAEAINEAGGDAEEWKKRDKPASSAAKDEEYDTDVVVIG AGGAGLAAATRSLQHDKKVVILEKFPQLGGNTARAGGPMNAAEPDWQKGFKALPGEKETL QELAETPTSEIDPEYVADFEKLRDQIKAYLDSGEDYLFDSVLLHEIQTYLGGKRVDLKGN EIHGKYELVTTLVNNVLDSVNWLTDLGVKFDRSDVTMPVGALWRRGHKPVEPMGFAFIHV LGDWVKEHGATVLTETRAKHLIIEGGKVTGVIAEKTDGSKVTVHAKSVILTAGGFGANTK MVQKYNTYWSEIADDIATTNSPAITGDGIALGQEAGAALTGMGFIQLMPVSDPVTGELFT GLQTPPENFIMVNQKGERFVNEFAERDTLAKAAIDNGGLFYLIADDKIKETAYNTTQESI DAQVEAGTLFRADTLEELAEKVGMDPAVLTDTIKKYNSYVDAGHDPEFGKSAFHLKCEVA PFYATPRKPAIHHTMGGLVIDTKGHVLDEAGHVIAGLYSAGENAGGLHAGNRLGGNSLAD IFTFGRIAADTADEENPASDAVSGASHH >gi|300497083|gb|AEAT01000052.1| GENE 45 48962 - 50203 1407 413 aa, chain + ## HITS:1 COG:lin2339 KEGG:ns NR:ns ## COG: lin2339 COG0477 # Protein_GI_number: 16801402 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 11 405 4 398 402 231 33.0 2e-60 MDASVTSGKKRSYLSTAVAVYTTFLMCGIIMSISAQYKLQLAELWGQKGNIAAVLSVSSA VGVGGLIGTLAGPLSDKFGRRFASIMACLCTVINFAGFMLAPNVTVAYVCSLIGGIGNSF MNAGLTPSMQDAYPDKRSMLTVLTKFFVSFGQFILPFVIVAFNAQHISFKVAFWGITVVY AVIGIACFFLPFPEVGGDRQAQKVEASSDVKPKGKIKITLESVILGLMGFSTTAVFMVWT NTNQELGKLYGLTNPAMLQSVYAIASLVSVLTTSAMVAKGVRESTILIVYPAVCAAGLLL SYFVQSGPLLYVLAAIMGWFASGGLMQLAVSLLAGLYPAHKATAISIVGLGNALSNWLII RACGSITASAGTNAPRVILLMNMVIAIVGVLFGIIVRISQNRRAKNNITNLES >gi|300497083|gb|AEAT01000052.1| GENE 46 50223 - 50972 1136 249 aa, chain + ## HITS:1 COG:CAC3665 KEGG:ns NR:ns ## COG: CAC3665 COG1073 # Protein_GI_number: 15896898 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Clostridium acetobutylicum # 3 249 8 256 265 105 31.0 1e-22 MSEKDVTITRDGLQLAAKVSIPNSKEYDLAILAYGFVGMMDPKVNDLLPVLAEKLQEKGL ATVRFDFNGHGLSEGPLDNMSIFNELEDYEAVMKYVFSLEGVKKIYLIGHSQGGVLSSMM AGYYADKIDKLVIMSSAATLVDDARIGTCMGQEYDPKAVPDKLDFGDFKLNGWYFRTAKF INIYETAAAYHGLVLALHGENDEIVNNYASRHYQSIYDNCEFHLIPESDHGLHQNREEVY ERVVNFLTK >gi|300497083|gb|AEAT01000052.1| GENE 47 51029 - 51937 796 302 aa, chain + ## HITS:1 COG:CAC2917 KEGG:ns NR:ns ## COG: CAC2917 COG0657 # Protein_GI_number: 15896170 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Clostridium acetobutylicum # 30 293 35 266 272 142 30.0 9e-34 MKIFNKKIGEKGAEASYYIQEADSSVDEKRKSSFLVIVPGGAYCYTAWREREPIAYEFIG KGFSCAIFDYATEGAEFFDGNHDYSRDPVSAFPNPLIDLAKLVADVRSHAEEWQLDPESI NVIGFSAGGNLTAQLAAYWQTSWLAKLTGLKAEQMRPDSVGLCYPAIKMVDLNNHNIAVL NKVKVSVDLINYAATGLDQSAERIAMINLDQAVTSQFPRTFMWGTTEDLNCHVGDAINFA GDLAKNKVPFEFHMYQKGNHGMSLADKRTDGRPDHSLSDPQAASWTKLYLGWLSENNLYH LL >gi|300497083|gb|AEAT01000052.1| GENE 48 51975 - 52442 756 155 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300811932|ref|ZP_07092393.1| ## NR: gi|300811932|ref|ZP_07092393.1| hypothetical protein HMPREF9264_2002 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] hypothetical protein HMPREF9264_2002 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 1 155 1 155 155 272 100.0 8e-72 MFYKSHFGTILTSVLSMFMGLVMAIFIIFLNHLPFNWVNLFELTAEINLIVFFFSLFIPY NAWGDWFAGLFHLKEGTVAYSLVEGIIPSVVLNTLNTFICTGASIFYNEAIPKAARMTAY LNGCKEAWIPCFIVSYIASFAAVALGKKVAQKYVK >gi|300497083|gb|AEAT01000052.1| GENE 49 52616 - 53362 884 248 aa, chain + ## HITS:1 COG:CAC3665 KEGG:ns NR:ns ## COG: CAC3665 COG1073 # Protein_GI_number: 15896898 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Clostridium acetobutylicum # 1 248 7 256 265 109 30.0 4e-24 MEKDITIMRDGLKLAAKVSIPESKEYDIVILAYGFVGMMDPKVNDLLPVLAEKLQEKGLA TVRFDFNGHGLSEGLLDNMSIYNELEDYHAVMDYVLNRDGVKHINLIGHSQGGVLSSMMA GFYADKVDKLVIMSPAATLVDDARIGTCMGIDYDPNHVPAKLDFKDFKLNDWYFRTAKFI NTFEVARAFHGPVLALHGSDDKIVDPYAVKHYQAILDNCEMHLIEGSDHGLHQNREEVYT RVVDFLTK >gi|300497083|gb|AEAT01000052.1| GENE 50 53508 - 54698 1150 396 aa, chain + ## HITS:1 COG:SP0298 KEGG:ns NR:ns ## COG: SP0298 COG1373 # Protein_GI_number: 15900232 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Streptococcus pneumoniae TIGR4 # 3 394 4 400 402 295 43.0 7e-80 MLVPRPTYLQKLEKLANKQIIKVLTGVRRCGKSSLLQLFQQQLLADGVQPEQIQAINFED LAFSKLTDYQELYRYLSQRLLPDQMNYIFLDEIQNVPNFEKAVDSLFIKSNVDLYITGSN AFMLSGELATLLSGRYIEIPVYPLSFKEFAQAKPDQSLQESYQQYLLRGGFPFALQLPDD ESFRDYIDGVVNTVLVKDVLARKDKSDSTLVRRLAAFLTETAGSLTSPKKIADTLTSMGE KTTPNTVASYLELLENAFLFYRCDRFDIGGKKYLSINPKYYPVDISLRRALVGQKRPNKG SRLETIVYQELRRRGYEIYVGVMQQTEVDFVVAKDGRREYYQVSLSLDDEQTYQREVRSL RLIDDNYPKIILTEDPGHFDDQGISQVNIIDWLMGE >gi|300497083|gb|AEAT01000052.1| GENE 51 55492 - 55737 71 81 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0100 NR:ns ## KEGG: LDBND_0100 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 2 81 110 189 189 130 87.0 2e-29 DTSAPSLKVRYADTKIDRFKNAILFDTPNFYIIICYNNAADKKVRLIYNIISKKQNNDIL AKFNFVKTISPDLKKVIKLHI Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:19:50 2011 Seq name: gi|300497053|gb|AEAT01000053.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00228, whole genome shotgun sequence Length of sequence - 21888 bp Number of predicted genes - 26, with homology - 26 Number of transcription units - 10, operones - 8 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 467 - 499 1.2 1 1 Op 1 . - CDS 504 - 1376 927 ## COG2200 FOG: EAL domain 2 1 Op 2 . - CDS 1373 - 1564 110 ## Acfer_0868 diguanylate phosphodiesterase - Prom 1764 - 1823 1.9 - Term 1777 - 1832 10.3 3 2 Tu 1 . - CDS 1837 - 2784 1430 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases - Prom 2819 - 2878 4.1 4 3 Op 1 1/0.000 - CDS 2895 - 4271 1758 ## COG1066 Predicted ATP-dependent serine protease 5 3 Op 2 . - CDS 4271 - 4825 970 ## COG0756 dUTPase - Prom 4851 - 4910 9.8 + Prom 4815 - 4874 6.4 6 4 Op 1 . + CDS 4931 - 5218 201 ## LDBND_1614 hypothetical protein + Prom 5228 - 5287 1.8 7 4 Op 2 . + CDS 5308 - 6657 2273 ## COG3579 Aminopeptidase C + Term 6674 - 6721 10.7 - Term 6956 - 6995 4.3 8 5 Op 1 . - CDS 7010 - 7957 1338 ## COG4639 Predicted kinase - Prom 7984 - 8043 6.1 - Term 7980 - 8033 2.3 9 5 Op 2 . - CDS 8057 - 8518 499 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases - Prom 8625 - 8684 6.7 - Term 8648 - 8688 5.1 10 6 Op 1 . - CDS 8690 - 9367 728 ## COG0588 Phosphoglycerate mutase 1 11 6 Op 2 . - CDS 9381 - 9566 257 ## LDBND_1620 hypothetical protein 12 6 Op 3 . - CDS 9568 - 9753 345 ## LDBND_1621 hypothetical protein 13 6 Op 4 . - CDS 9774 - 10454 869 ## COG0406 Fructose-2,6-bisphosphatase 14 6 Op 5 . - CDS 10514 - 11254 901 ## COG0730 Predicted permeases - Prom 11310 - 11369 5.9 + Prom 11228 - 11287 3.5 15 7 Op 1 1/0.000 + CDS 11473 - 12054 942 ## COG0693 Putative intracellular protease/amidase 16 7 Op 2 . + CDS 12056 - 12574 597 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 17 7 Op 3 . + CDS 12635 - 13693 1588 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 18 7 Op 4 . + CDS 13695 - 14435 1094 ## COG2367 Beta-lactamase class A + Prom 14438 - 14497 3.4 19 7 Op 5 . + CDS 14518 - 15273 918 ## LDBND_1629 transcriptional regulator + Term 15275 - 15302 -0.1 + Prom 15311 - 15370 6.8 20 8 Op 1 . + CDS 15419 - 16831 2515 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Term 16914 - 16962 9.1 + Prom 16982 - 17041 8.5 21 8 Op 2 . + CDS 17084 - 18454 1830 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 18489 - 18550 17.2 - Term 18480 - 18533 15.2 22 9 Op 1 . - CDS 18567 - 19238 840 ## LDBND_1632 hypothetical protein 23 9 Op 2 4/0.000 - CDS 19231 - 19806 1023 ## COG0698 Ribose 5-phosphate isomerase RpiB 24 9 Op 3 2/0.000 - CDS 19826 - 20254 549 ## COG0698 Ribose 5-phosphate isomerase RpiB 25 9 Op 4 . - CDS 20273 - 21040 831 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 21082 - 21141 8.3 - Term 21210 - 21252 0.6 26 10 Tu 1 . - CDS 21289 - 21756 281 ## LDBND_1983 transposase Predicted protein(s) >gi|300497053|gb|AEAT01000053.1| GENE 1 504 - 1376 927 290 aa, chain - ## HITS:1 COG:CC3094_4 KEGG:ns NR:ns ## COG: CC3094_4 COG2200 # Protein_GI_number: 16127324 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Caulobacter vibrioides # 54 163 125 236 283 106 41.0 4e-23 MNLSYKVDRYVIQEVAQGLRGRIDKGEKLVPVSINLSRADFQMMDPLTELNQAIHNFRQA GYEVWMDDFGSGYSFLNYLKNFEFDEIKLDMIFMKDFDEASKKILTACVKMAKDLGIHTL AEGVETKQKLDFLQSIGCERIQGFYYSKPLPTGEFAKLVAEKGIEIENWQQSKFYQCVGL VDLASDKPTCLALDDGSHFRLLYVNEEFQKEVKRAPAVFKQIVNEWNKPESEIAKRLQAF AKKVDQGEASYFDFKQTEQYLRLSAQQIARHENYQMLLINASDITVQYLK >gi|300497053|gb|AEAT01000053.1| GENE 2 1373 - 1564 110 63 aa, chain - ## HITS:1 COG:no KEGG:Acfer_0868 NR:ns ## KEGG: Acfer_0868 # Name: not_defined # Def: diguanylate phosphodiesterase # Organism: A.fermentans # Pathway: not_defined # 6 47 140 181 953 62 61.0 4e-09 MQEKEELKQYLIDHLDEAIEKHYLQVYYQPVIRTLTGRLCGAEDLIRSRASCHRATLFPS LKR >gi|300497053|gb|AEAT01000053.1| GENE 3 1837 - 2784 1430 315 aa, chain - ## HITS:1 COG:HI0258 KEGG:ns NR:ns ## COG: HI0258 COG1442 # Protein_GI_number: 16272216 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Haemophilus influenzae # 2 224 38 250 330 89 25.0 7e-18 MTVPVFYSISDDFTPYAAVSLHSLVKHADPKRDYTVTFLHQGLSRDHEKALAAYNRDNVH IKFYEMSDELLKPIQDRKENYLRGDFFAMSIFYRLFIPDLFPEYDKVVYIDSDTVLNDDI AKLYDHDLGNNLLGACTDTSIQFVEKMLRYIKEVLALDPKEYINSGMLVMNAKAFREENF VDKFFSLLGRYHFDCIAPDQDYLNEICSGRIKYLDGRWDAMPNENTAALENPGLIHYNLF FKPWRFSGIQYEDYFWTNAEETIFADELKAELAKTTDEERDTEYHKLDHMLGKLDMTLQD PHNWARVKENEQVTL >gi|300497053|gb|AEAT01000053.1| GENE 4 2895 - 4271 1758 458 aa, chain - ## HITS:1 COG:lin0265 KEGG:ns NR:ns ## COG: lin0265 COG1066 # Protein_GI_number: 16799342 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Listeria innocua # 1 453 1 451 457 528 57.0 1e-149 MARARTQYKCRSCGYISASYLGRCPNCGAWNQFEKESQEVRQTSTKATPSRLMASVGAKE AVKMSTVKAEKEGRVLTKSSELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSELAEK YKVLYVSGEESASQIKLRADRLGLGQSPMLLYPESNMEHIRDQIDDVKPDFVVIDSIQTM NEPSLDSMVGSASQVREVTAELMKIAKLDQVTVFVIGHVTKEGSIAGPKILEHMVDTVLY FEGDEHHAYRILHSVKNRFGAANEIGMFEMKTEGLAEVTNPSAVFLDERLPDSTGSAVVV SLEGTRPILGEIQALVTPTAFGYAKRTTSGLDYNRVSLLLAVLEKRGNLMLQNQDAYLSA TGGIRLNEPAIDLAIAMAIASSYYDKEISATDCFVGEIGLTGEVRRVNQIQARVKEASKV GFKRIFIPKYNMSPALQDLGIEVIPVSSVRQALHYLFS >gi|300497053|gb|AEAT01000053.1| GENE 5 4271 - 4825 970 184 aa, chain - ## HITS:1 COG:L181168 KEGG:ns NR:ns ## COG: L181168 COG0756 # Protein_GI_number: 15672158 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Lactococcus lactis # 3 179 2 149 150 134 43.0 9e-32 MNRVRGFEVVKKYEGQGLTLPRRQTLASAGYDIEAARDITIPSIWSLNFVRIFRLIRNGH DLIESDFLQAEEVLKPILVPTGIKAYMPEDEVLILANRSSNTFKRNLSLPNGIGVIDSDY YNNPNNEGEIFVQVLNYGVRPLKIKKGERIAQGIFIKYLKTDDDQPIESQRLSGFGSTGK KGGK >gi|300497053|gb|AEAT01000053.1| GENE 6 4931 - 5218 201 95 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1614 NR:ns ## KEGG: LDBND_1614 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 95 1 95 95 174 97.0 1e-42 MPEEREKVIEIKADGQLVAKSPLLLIERKSGPVWAMNQLFIAPGAPEGTLGQVMKQVEKL CQETGLKVWPLDPQVIAYCQKHGELTNIWAGKPTN >gi|300497053|gb|AEAT01000053.1| GENE 7 5308 - 6657 2273 449 aa, chain + ## HITS:1 COG:SPy1651 KEGG:ns NR:ns ## COG: SPy1651 COG3579 # Protein_GI_number: 15675522 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pyogenes M1 GAS # 11 446 6 443 445 476 54.0 1e-134 MSKEISFDTIENFTSNLSKHPAYGVAANAAQTNGIFKASQSTQSKVDLDPTFSVEIDTGS VTNQKQSGRCWMFSALNTMRHSIQKEFKLKGFELSQSYTFFWDKFEKSNFFFENVIGSAD KPLGDRKVSFLFATPQSDGGQWDMLCGLIEKYGIVPKKVYPETANSENSRALNDTLNTML RKGGLELRALVNEGKSAEEVEAHKAELLDAIFRMLATSLGLPPKSFNFEYTDDDGNYHID KDITPQDFFKKYVGWDLENYISVINGPTADKPYNKVFSVEYLGNVVGGRQVRHLNLELSK FKELIINQLKQGEVVWFGSDVSKGGDREAGLLDTKIYQRDQLFDYDFSMSKADRLDSGES MMNHAMVITAVDLVDDKPTKWKIENSWGDKPGFKGYFVMSDEWFDQFVYQAVLNKAFLPE DVKKAYDEGKENPIELLPWDPMGALAFDF >gi|300497053|gb|AEAT01000053.1| GENE 8 7010 - 7957 1338 315 aa, chain - ## HITS:1 COG:FN1603_1 KEGG:ns NR:ns ## COG: FN1603_1 COG4639 # Protein_GI_number: 19704924 # Func_class: R General function prediction only # Function: Predicted kinase # Organism: Fusobacterium nucleatum # 5 187 1 174 174 79 30.0 6e-15 MELNMRKLFLLRGAPGSGKSSFIARHHLLPYAISGDAIRLLLANLTVYYDQKTDVLHQVI PRHVTEQTKRMKDNLVEHKMSYGETVIVDGTHIVASEIDHYKKWCEKYHYECYVVDLMQN QTLEGLLKRNQIRTQYDWVKPEVITMMYNSYKAHPELPKWVKGIKPNQMEQALQQRENNL DHYSHVIAIPDEVAEEDFPRVHISNFYFSFNDKFSEKYGTYRNVVTIGKTKEEVVDEFRL PFFAFKFHHKHFLISAYPIRNEMLDPVKKVKGTWSYTTGLYNVADFIREFPKNDKSHVHQ FNLSNLDRTRLLHIW >gi|300497053|gb|AEAT01000053.1| GENE 9 8057 - 8518 499 153 aa, chain - ## HITS:1 COG:L160425 KEGG:ns NR:ns ## COG: L160425 COG0764 # Protein_GI_number: 15672547 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Lactococcus lactis # 4 143 7 145 151 153 56.0 1e-37 MPVMTAQEVMDLIPNRYPICYIDRVEELEADKRIKAVKNVTINEPFFQGHFPGNPVMPGV LIIETLAQAASILILKSPAFYKKTAYLGAIHQAKFRRMVRPGDVLEMEVKMLKVRAKTGS VAAVAKVNGDLVCQTELVFIVGDRDGKDMQAKN >gi|300497053|gb|AEAT01000053.1| GENE 10 8690 - 9367 728 225 aa, chain - ## HITS:1 COG:SPy1429 KEGG:ns NR:ns ## COG: SPy1429 COG0588 # Protein_GI_number: 15675343 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Streptococcus pyogenes M1 GAS # 1 221 1 225 231 199 45.0 5e-51 MAKLALLRHGESQANAANVYTGWNDVPLTDKGRRQAWAAGEKLKEVGDFHPTMIHTSLLS RAIETANIAAEAAGFLYLPVAKTWRLNERHYGALRGLDKDVSRKIFGKEQVLEWRRGFDA VPPAQGSPTIDRRYWGVDPQLLPRAESLHQSQLRLLPYYEDEVASRLVAGEDQLIVAHGS SLRALIKYLEDINNVDILKLEVPNAQAIVYDFDQELNIVDKMITN >gi|300497053|gb|AEAT01000053.1| GENE 11 9381 - 9566 257 61 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1620 NR:ns ## KEGG: LDBND_1620 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 61 1 61 61 94 98.0 2e-18 MNVHSWWVPYAISLFGIWDLITGITRLRRQKQGVKQKGLGGKAFVLLGILFIITGIWAFW L >gi|300497053|gb|AEAT01000053.1| GENE 12 9568 - 9753 345 61 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1621 NR:ns ## KEGG: LDBND_1621 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 61 1 61 61 107 100.0 1e-22 MKWDTHTFTLVLLVIVGLWEFARGYNIQRMGKKDSLPAKSYYLTGAGILAVAIYYAVKLW G >gi|300497053|gb|AEAT01000053.1| GENE 13 9774 - 10454 869 226 aa, chain - ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 2 181 4 181 224 102 35.0 8e-22 MKTEVYLVRHGETLFNRLNKVQGWCDTPLTIKGIDDLKKTADALSQIHFDNMYSSDLKRA IDTVHLMKDVNQVSNIGKIKKLPEFREVFYGSFEGGSIDDIWLGVSKAAGIPATTDVKKI IDTIGIYKFREVTKKADPLHLAESTEELETRMCRAIKVLRKETSGKGRVLLVSHGDFIKT LGIKYWKESDGLHDITFPDNGSVSRGILDEEGNFEIVDYNCKAEDL >gi|300497053|gb|AEAT01000053.1| GENE 14 10514 - 11254 901 246 aa, chain - ## HITS:1 COG:Cgl2018 KEGG:ns NR:ns ## COG: Cgl2018 COG0730 # Protein_GI_number: 19553268 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Corynebacterium glutamicum # 10 226 18 252 269 80 27.0 2e-15 MQFIYLIILGVLAGIVAAVASMASLVSYPGLLLFGLSPVSANMTNTAALVTTGFGSLSSC LKEMRGHWGELWRYAFFQLTGALIGGWLLVQFPGKIFQKLVPFFVLFSAGLLLYSGRQKH PKQATKLGRIGAYFGLFVAGIYAGYFGAASGVLTLIFLTALSDSSFVVINAIKSVIGSLA NLVALALFAFKGGVNWPVAFPLAIGLFIGGYFGQKMIKYLKPAWVRWITACFSVLLAIYL GWRAWG >gi|300497053|gb|AEAT01000053.1| GENE 15 11473 - 12054 942 193 aa, chain + ## HITS:1 COG:SP0804 KEGG:ns NR:ns ## COG: SP0804 COG0693 # Protein_GI_number: 15900697 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Streptococcus pneumoniae TIGR4 # 1 183 1 176 184 133 40.0 2e-31 MPTAAIVFSDGCEEIEGLSQVDVLRRLGIPCDMVALDNLTITGGHDIRFTCDKLVDESLL DYDLVAFPGGAPNAKHLRASEKLAGLMKQRFAAGKWNAAMCASPIALSKYGFLKEAKWTS HPDFKEQVASENPASTYVDTPAVIDEDHKLVTSRGPATSWAFAYALAQVLGVDTSQLEDA MQYSYLRDHINEA >gi|300497053|gb|AEAT01000053.1| GENE 16 12056 - 12574 597 172 aa, chain + ## HITS:1 COG:L36177 KEGG:ns NR:ns ## COG: L36177 COG0454 # Protein_GI_number: 15674159 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 7 172 4 169 169 102 36.0 5e-22 MTEETLVRKAESRDLEDIVAIIKDAKALLKAQNSSQWQEGYPNRASIEEDLDNRQGWVLL KDGQVAAYMAATDFDPNYEVPIWARSAPYWALHRFAIKKDFRGQGLSQLLLKKVIAFGQE NGIESFRLDTGKQNQAVQHLADKLGFVYRGIIMVTSDSVDPERRAYELLFDK >gi|300497053|gb|AEAT01000053.1| GENE 17 12635 - 13693 1588 352 aa, chain + ## HITS:1 COG:lin0197 KEGG:ns NR:ns ## COG: lin0197 COG4948 # Protein_GI_number: 16799274 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Listeria innocua # 5 333 1 327 358 235 39.0 1e-61 MAEQLAIADLQVDIKQIPLKQPFVTALHRVDAVNAVRVTVRLANGVTGVGTCTPNEKVTG DSLSSARAVIEETIKPLVLGKNLTDWKELLNTVKTSIVHNAPAKAAVEIALYNTRANLFG LTLSQLLGGKGGSVETDYTISIGKAEQMIANAQKMVDQGFKTLKLKLGAGHLKRDIKLVE DLAYAAGPMVHLRLDMNQAWDVRQTMQAAEYWHKQGLLIDFIEQPVPAWDLDSMAYLTRH SPYPIMADESVESYEDAQRVLAKNACDYINIKLMKTGGLSEAQKINDLAESRGVPTMVGS MIESIESLAAACAFYRANPNTIFADLDAIFMVDQDPDLNSYAECVGDNIVVR >gi|300497053|gb|AEAT01000053.1| GENE 18 13695 - 14435 1094 246 aa, chain + ## HITS:1 COG:lin0199 KEGG:ns NR:ns ## COG: lin0199 COG2367 # Protein_GI_number: 16799276 # Func_class: V Defense mechanisms # Function: Beta-lactamase class A # Organism: Listeria innocua # 19 244 18 257 257 80 29.0 2e-15 MLDFKKIADILAPLPGKTALLIKDKTGVLYASPLAGEEFKSASLIKLAVACYYQAHPQDL SQMVHVPEDKIVEGGMLCHLAQRDWMLRDILDLMLSDSDNTATNFLIAFIGFAKMAAWFE AEFAHLHLGRYLMEVTDRENYLSAETALELLERLLADPSPFGQVCQKALFYQESVNKLLQ DLPEGCSYSKTGELEDTEHDAARIFAGDSYYDICFMSHYTGLEEREQILLAQNAVGKLAY QDLTGK >gi|300497053|gb|AEAT01000053.1| GENE 19 14518 - 15273 918 251 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1629 NR:ns ## KEGG: LDBND_1629 # Name: not_defined # Def: transcriptional regulator # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 251 1 251 251 483 100.0 1e-135 MDITNFFTVETSELSKSDRKIMKRMTSDLTNVESLTINHLAEEAGTSLASVQRFCQKMGY SGFKEFKFQLLTYIKKQESQEAAVSSSEYLDDYHDAINRVWTANEKDAEELAEVLATSST NFIFGIYYSELPARLLSMGMRDLGKSTYFGDNLAAGEHLFPLSDENSTAVFYSVSGISKL FGSSPLPKSISHFKHSYLVTMNPDTPLKKYFKKVIVLPGKNLAQGLPVDPQSIPVVFTER VIDIAATKYRR >gi|300497053|gb|AEAT01000053.1| GENE 20 15419 - 16831 2515 470 aa, chain + ## HITS:1 COG:SPy1070 KEGG:ns NR:ns ## COG: SPy1070 COG0624 # Protein_GI_number: 15675062 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pyogenes M1 GAS # 3 466 4 469 469 406 46.0 1e-113 MDLNFKELAEAKKDAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDG FDTENFANYAGRVNFGAGDKRLGIIGHMDVVPAGEGWTRDPFKMEIDEEGRIYGRGSADD KGPSLAAYYGMLLLKEAGFKPKKKIDFVLGTNEETNWVGIDYYLKHEPTPDIVFSPDAEY PIINGEQGIFTLEFSFKNDDTKGDYVLEKFKAGIATNVTPQVTRATISGPDLEAVKLAYE SFLADKELDGSFEINDESADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFL HFLAEVEHEDFYGKKLGIFHHDDLMGDLASSPSMFDYEHAGKASLLNNVRYPQGTDPDTM IKQVMDKFSGILDVTYNGFEEPHYVPGSDPMVQTLLKVYEKQTGKPGHEVVIGGGTYGRL FERGVAFGAQPENGPMVMHAANEFMMLDDLILSIAIYAEAIYELTKDEEL >gi|300497053|gb|AEAT01000053.1| GENE 21 17084 - 18454 1830 456 aa, chain + ## HITS:1 COG:SPy1654 KEGG:ns NR:ns ## COG: SPy1654 COG1113 # Protein_GI_number: 15675525 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Streptococcus pyogenes M1 GAS # 7 447 11 451 459 407 48.0 1e-113 MEDRSIENTDGTIRSLSNRHVQMIAIGGTIGTGLFLGAGTTISATGPSVIFIYAIMGLFF FFLLRALGEMFYFDSNSHTFVSFITRYLGEAAGRFAGWTYWIGILFACMAELTAVSTYVQ YWLPGLPAWLIEVSVLGLLTLLNLTAAKLFGETEFWFAMIKIIAIISLVVTGIIMVAANA KTPVGHASLSNFTGSFSLLPKGKYAFFTAFPMVFFSFAGIEFVTITIGEAKNPKKVIKKA VNETLLRILLFYIATLAVIMCVIPWGKITSGTSPFVQVFKIAGFNAVASVFNFVVLTAAA SSLNSGIFSAGRHFFQLAEEAPKDSFLKKHFAKISANGVPAAGIVVSVALMLIAPIMSFS STAIEVFGMVAGATSDMYILVYVLALLAHRKYRESSDFIAAGFKMPFYKLSSPLTIAFFL VIFFSLFFIPADVFGASLAASWALLFGGWCWLSEKH >gi|300497053|gb|AEAT01000053.1| GENE 22 18567 - 19238 840 223 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1632 NR:ns ## KEGG: LDBND_1632 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 223 1 223 223 422 96.0 1e-117 MTKLEAFRQANPDLTILEISDPAFAQYGVKYDYPLEEIEQVMARVEMPAKGSSYLQKIPA LEKTETIQRIGRDVFAGMPVDAGATIGHTDDFSAFEYHQCSELNIMLDDVLMVLGKRQIL DQRGQIDPQKDGQLFYVPKGSVVELYNTTLHYAPIQITNAGYKVIVVVLQGTNLPLPDGF KSDNPRVVKQGKFQVVHPSRTDKIAQGYQVALTGDLLTTRPLD >gi|300497053|gb|AEAT01000053.1| GENE 23 19231 - 19806 1023 191 aa, chain - ## HITS:1 COG:SA1996 KEGG:ns NR:ns ## COG: SA1996 COG0698 # Protein_GI_number: 15927774 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Staphylococcus aureus N315 # 22 191 3 171 171 206 58.0 3e-53 MLDNDRPQPEYVDPKIDKHTVIALGNDHIVTATKMLISDHLKDEGYQVLDMGTYDNYRTH YPMYGKRVAEAVADGRADLGIVLCGTGIGISTAADKNEGIRAAMVGDVTQAIYAREELNA NVLGFGGIVLGRDFIFDIVDGYLNAEYKPSEENKKLIDKIDHIAKPNPDQKDNEHFFDEE NKKWAQGVYHD >gi|300497053|gb|AEAT01000053.1| GENE 24 19826 - 20254 549 142 aa, chain - ## HITS:1 COG:SPy1923 KEGG:ns NR:ns ## COG: SPy1923 COG0698 # Protein_GI_number: 15675731 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Streptococcus pyogenes M1 GAS # 1 141 1 141 142 127 46.0 8e-30 MKVVIGSDKDGFNLKESVKDYLQKHDYEVLDVTPEPAEDFVESSLKVTHEVLDNGIKKAV MFDRYGVGSAMASNKVKGMVTANVNEERTAHMTAMHNGAKAIALGSGVVGPDLANTIVQR YLDTEYAAGRHQVRLDMLEKMI >gi|300497053|gb|AEAT01000053.1| GENE 25 20273 - 21040 831 255 aa, chain - ## HITS:1 COG:SPy1712 KEGG:ns NR:ns ## COG: SPy1712 COG1349 # Protein_GI_number: 15675565 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Streptococcus pyogenes M1 GAS # 1 249 1 248 256 219 46.0 4e-57 MLKRERLDQIMIAVTKQGYVSVADLAKALNVSEMTIRRDLDELSKSGKVIRLHGGVQAIS SQNQIEQNFQEKREIHIQEKQEIAKVAASLVNDNETIYVGPGTTLEFMVARLNQENLRIV TNSLPIFEMARSNPRNYKLVLVGGSYRRVSGSFYGALSNNELDSMNYDKAFVGVNGISDA ALLTADIEEGQTQSIGLNNSQKRILVADMYKFNHRDFYQFYSLYDIDELVTNEQISPDVL EYYRQYTSIRTRIEE >gi|300497053|gb|AEAT01000053.1| GENE 26 21289 - 21756 281 155 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1983 NR:ns ## KEGG: LDBND_1983 # Name: not_defined # Def: transposase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 155 301 455 455 300 96.0 9e-81 MSKRSTLVQKDEDARKDKLVSTAGEIFNTPEIKAHGGNEVWYDELLEENKLFFTIDLVKD LLDQAYNSHDEVEMCVRLEEIIDICKATKNSHFIWFARLLYRHLRGIYTFAKYGISTGKL EGINNKIKTERRKGYEYPDDECFSLRLMELSQKAS Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:20:10 2011 Seq name: gi|300497051|gb|AEAT01000054.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00163, whole genome shotgun sequence Length of sequence - 582 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 83 - 142 2.9 1 1 Tu 1 . + CDS 253 - 580 78 ## COG3464 Transposase and inactivated derivatives Predicted protein(s) >gi|300497051|gb|AEAT01000054.1| GENE 1 253 - 580 78 109 aa, chain + ## HITS:1 COG:RSc2573 KEGG:ns NR:ns ## COG: RSc2573 COG3464 # Protein_GI_number: 17547292 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Ralstonia solanacearum # 2 109 133 234 406 64 31.0 5e-11 MTVKSIHKSLLLSKFTTDGKTLIKPERQAKYLAIDEFKLHDGHKYATAIIDWETGYILYL AHGKKKAVVFEFMDHVGDEWMSKVEAVACDMNSDFEEAFKGRYPKLDIV Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:20:11 2011 Seq name: gi|300497047|gb|AEAT01000055.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00248, whole genome shotgun sequence Length of sequence - 4125 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 225 208 ## LDBND_1400 transposase, IS30 family - Prom 340 - 399 6.4 + Prom 341 - 400 6.7 2 2 Op 1 4/0.000 + CDS 437 - 3100 3858 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains 3 2 Op 2 . + CDS 3111 - 3935 1137 ## COG0266 Formamidopyrimidine-DNA glycosylase Predicted protein(s) >gi|300497047|gb|AEAT01000055.1| GENE 1 3 - 225 208 74 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1400 NR:ns ## KEGG: LDBND_1400 # Name: not_defined # Def: transposase, IS30 family # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 74 1 72 349 134 97.0 1e-30 MDHSYSNTKPHQKGKHLTLNDRTTIQELHSKGYSNRAIARDRELNCSPSTVGYELKRGTV SLYTGNVKRYKAVE >gi|300497047|gb|AEAT01000055.1| GENE 2 437 - 3100 3858 887 aa, chain + ## HITS:1 COG:BS_polA_2 KEGG:ns NR:ns ## COG: BS_polA_2 COG0749 # Protein_GI_number: 16079961 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Bacillus subtilis # 327 887 2 560 560 565 51.0 1e-160 MNKKKLLLIDGNSVAFRAFFAMYQQLDKFKNPEGLHTNALYAFKNMLDVVLKQEDPSHIL VAFDAGKTTFRTAMYKDYKGGRDKTPAELSEQLPYLREMLKDMGIKSYELANYEADDIIG TMAKKGAEAGYEVAVVSGDKDLTQLASDHVTVYVTKSGVTKLEAFTPDHMKEVNGVTPTE FIDMKALMGDPSDNYPGVAKVGPKTASKLIQEYGSVENLYNHVDEMKKSKLKENLIASKD NALLGKKLATINCDSPVEVTLDDLSYEGSNIDDLRRFYEKMNFRRFLADLTQKGELTENK TEVKKQDYVVLSADNLDQLPKAAEVTFYLAMFGDNYHLADFAGFALKIGGETFVSRDVFL LQESPLKGMLEDSAVQKNVFDLKRTTYGLYRLGIKAESLSFDLLLASYLVDNEKNSNDLG ELVQGYDYFDLKTDLEVYGKGKNAKIPADDAVFFNHLAGKTAAIAALKDSLLKQLKDHEQ DDLYDSIELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEFNLNS PKQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQISKIQSTYVKG LLDVIDERDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSPDGYIY SCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKAVN FGIVYGISDYGLSKNLDISRKQAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIMHR RRYLPDIHAKNFNVRSFAERTAINSPIQGSAADIMKIAMINMQKKLDELGLKTKMVVQVH DELIFDVPADELETIQKIVPSVMQAAVKLDVPLVADAGWGHDWYEAK >gi|300497047|gb|AEAT01000055.1| GENE 3 3111 - 3935 1137 274 aa, chain + ## HITS:1 COG:BH3152 KEGG:ns NR:ns ## COG: BH3152 COG0266 # Protein_GI_number: 15615714 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Bacillus halodurans # 1 272 1 274 274 259 48.0 4e-69 MPEMPEVETVRRTLRPLVVGKTIDHVDIWYDKVITGDPETFKRELKGKTFTAVDRYAKFL LFRLGDLTVVSHLRMEGKYHLTTWDAPVDKHEHLQFAFTDGSSLRYADVRKFGRLQLVET GTEFQVTGLKNLGVEANSPEFSLDYFEKGLKKRSMNIKSLLMSQTLVAGLGNIYVDEVLW QSRINPLTPANELTKDQVKQLHSAINETIEEATKYGGTTVHSFLNAEGESGHYQEKLKVY GKEGQPCPRCGEGFVKIKISGRGTTYCLHCQKRL Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:20:18 2011 Seq name: gi|300497033|gb|AEAT01000056.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00219, whole genome shotgun sequence Length of sequence - 13698 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 8, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 55 - 432 527 ## LDBND_0720 hypothetical protein + Term 438 - 467 2.1 - Term 426 - 455 2.1 2 2 Tu 1 . - CDS 491 - 2140 3056 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 2352 - 2411 4.9 - Term 2256 - 2293 1.0 3 3 Tu 1 . - CDS 2413 - 3075 1062 ## COG0778 Nitroreductase - Prom 3113 - 3172 5.7 4 4 Tu 1 . + CDS 3487 - 5094 2077 ## LDBND_0716 triacylglycerol lipase + Term 5103 - 5140 3.0 - Term 5084 - 5133 11.4 5 5 Op 1 4/0.000 - CDS 5143 - 5745 873 ## COG0218 Predicted GTPase 6 5 Op 2 4/0.000 - CDS 5735 - 6988 279 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 - Prom 7040 - 7099 4.0 - Term 7076 - 7117 6.4 7 5 Op 3 . - CDS 7140 - 8465 1908 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) - Prom 8512 - 8571 6.5 - Term 8575 - 8609 5.3 8 6 Tu 1 . - CDS 8648 - 9838 1319 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 - Prom 9956 - 10015 2.8 - Term 9919 - 9951 -0.8 9 7 Op 1 . - CDS 10020 - 10853 734 ## Ldb0775 hypothetical protein 10 7 Op 2 2/0.000 - CDS 10840 - 12714 2723 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily - Prom 12804 - 12863 5.7 - Term 12883 - 12916 5.2 11 7 Op 3 . - CDS 12932 - 13201 457 ## PROTEIN SUPPORTED gi|104773857|ref|YP_618837.1| 30S ribosomal protein S15 - Prom 13289 - 13348 7.1 + Prom 13313 - 13372 6.9 12 8 Tu 1 . + CDS 13405 - 13656 381 ## PROTEIN SUPPORTED gi|104773856|ref|YP_618836.1| 30S ribosomal protein S20 Predicted protein(s) >gi|300497033|gb|AEAT01000056.1| GENE 1 55 - 432 527 125 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0720 NR:ns ## KEGG: LDBND_0720 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 125 1 125 125 223 100.0 3e-57 MNEDNGSRYIQPHDSLEAMELIQKLFNQYRRAPLTPELLAYHQNLIERLEGDIHQAAEAE GQAKRVQELDRMIKLMKDWTAIRLSGRPFNAKMRHFRFLPEGGQVKFKRHPHKIKASSSH RASRH >gi|300497033|gb|AEAT01000056.1| GENE 2 491 - 2140 3056 549 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 28 548 37 557 559 367 40.0 1e-101 MQKIKKFTLAAVSVSAAFLLAACGSQQSSSSASKDKQVLKLSATAPLDTIDISKATGYGQ TGNVFESFYRLGKNGQPAAGLAKSGTVSKDGKTWTFKLRSNAKWSNGEKITAQDFVYSWR RTINPKTASPYAYLFSGIKNADEIIAGKKSPSSLGIKALNQETVQVKLNRPIAYFKVLMA YPLFGPQNEAFIKKTGKKYATSSKYMLYSGPFKLTGWKGTNDTWSFVKNNQYWDKQAVKL SKISYQVVKTTNTGYQLYQQGKLDLTPLSSEQVKQLKKNKDFKTYPYSYVAFLAYNFQAK DATVKKALNNKNIRLALSLSLDRKILTSKVFGDGSSVPTGFVASGLAYDPANKEDFAKEQ KVANTVDYNEKLAEKYWKTGLKELGLKNLNLTLLASNESTNADALTQYLQSQWTKVLSGI NVKVNSIPSKNAYTKASSGDFDIYVSGWGGDFSDPMTFMQILQKGTSYNYGKWNNAEYNR LIKKALTTDANDVNKRWQDLVKAAQVANADQAVSPIYQQTTAYLQNSKVKGIIHNNAGTQ WSYKYAYIK >gi|300497033|gb|AEAT01000056.1| GENE 3 2413 - 3075 1062 220 aa, chain - ## HITS:1 COG:RSc1608 KEGG:ns NR:ns ## COG: RSc1608 COG0778 # Protein_GI_number: 17546327 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Ralstonia solanacearum # 8 216 18 234 235 71 25.0 1e-12 MTDAIDTIKSRHSTRYFDQGKEPSRADLEEVIRLAGLAPSWVDSQPWRVYLAMGETAKKI HARHLALAEAGTAASPDWETWHREDWDPYPRENMARHNQASQEYLNTPELLDLRTNILQK NLYYAPAIAYLTIPKQSNLWSVYDLGAFAQTLALAAKAKGIDSMPAYELVKYPASVREIM GIPEDQTLAMGIGLGYGKDEYVNGYQAPRRDLPDFLTIKD >gi|300497033|gb|AEAT01000056.1| GENE 4 3487 - 5094 2077 535 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0716 NR:ns ## KEGG: LDBND_0716 # Name: not_defined # Def: triacylglycerol lipase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 535 1 535 535 1021 98.0 0 MDNSNLLTYLEWRGDIPLEKSPFNEIDALVLAIFSYLNLEKYIPSGNKEVTVGEIAEKYF ASSFTGLDASQYQELFHLMSEADRFKDARLSHFNTVLTDQCQFSALKIVLEDGTHYVAFR GTDDTLVGWREDFEISFKETKAQILGARYLKDLLAGDSADYILGGHSKGGNLAEYAALNL PEDYRARIKAVYTFDSPGLASEAGVDYNEDFLQRVLRRYVPDFSIIGRLFEPREVDPVIV YSTNVNIAQHDTYSWQIKGSHFVTRKRPNPESRVYNQLINQWIGSASLEEREALTQDLFD ALAASGSSKINQLAKNGFGGFGAILLSVTNSSRRTKFILGNLFSSIWQLIKNQQIGAALF SRDTMAGWLLVLLGIISLTAPNYAFKAFGVLAAVGGIIFSVNHILTVSVSAFKPQQKRFF LITYLVLFAVSIALLSSNQLLVFLAHYFLGAFLLFYAYGRSRKIILRRQTGVFRMIITGA EAVISFALGIIVIITPEYFNHQSIIEIGILLIIYGAFKLVAELFNHRPQMPKKHR >gi|300497033|gb|AEAT01000056.1| GENE 5 5143 - 5745 873 200 aa, chain - ## HITS:1 COG:BS_ysxC KEGG:ns NR:ns ## COG: BS_ysxC COG0218 # Protein_GI_number: 16079871 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Bacillus subtilis # 1 188 1 184 195 201 53.0 7e-52 MIINQSEFSVSAVKASQYPEGGLDEIALAGRSNVGKSSFINTLLQRKNLARTSSSPGKTQ TLNFYRVDSDQADFYLVDVPGYGYAKVSKKQREEFGEMIQDYLETRAYLKGLILLIDGRH EPTADDIAMYDYAQYLNLPILLVATKMDKIKKNAFNKTEAAFRKHLNLNKDNVTFLPFSS VTKLNVDQVKDWIQARLDEE >gi|300497033|gb|AEAT01000056.1| GENE 6 5735 - 6988 279 417 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 154 416 258 458 466 112 32 2e-24 MATKFTDPEEVKCSFCGKSASQVKKMIAGNGVYICNEDIELAKRIIDDELRLDSLKEARE LPKPMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQMDVDSSTELQKSNIALIGPTGS GKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIYI DEIDKISKKSENVSITRDVSGEGVQQALLKILEGTIASIPPQGGRKHPQQEMIRMDTTNI LFIVGGAFDGIEEIVKNRLGKKTIGFGAEQESGKVDDDNWNRFLTTGDLVKFGLIPEFIG RIPIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPAAVKQIADLAIERK MGARGLRTIIENAMMDIMYRTPSESDISKVIITPETITGMGEPKVVRRELEEVADDH >gi|300497033|gb|AEAT01000056.1| GENE 7 7140 - 8465 1908 441 aa, chain - ## HITS:1 COG:SP0400 KEGG:ns NR:ns ## COG: SP0400 COG0544 # Protein_GI_number: 15900319 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Streptococcus pneumoniae TIGR4 # 1 423 1 424 427 401 55.0 1e-111 MSANWKTTGKTTGELSFEISQDEIKKSLDKAFDRVKKSLRVPGFRKGHVSRVIFNQYYGE EALYEDALNFALPEAYSAAVKETGIKAVGQPQIVPVSMGKNKAWEMKAIVTVEPEVELGQ YTEIEVPKQNTRVYQKDIDAELTKRQEQNAEMVLKNDKAENGDTVTIDYVGTVDGVEFDG GSAQNYSLELGSNTFIPGFEDQLVGHGAGEEVDVVVTFPEDYGAKDLAGKEAHFATKIHE VKAKQLPELDDEFAKDVDDSVETLDELKEKIKAELKSEKEEAAKAAIQEAAITTAVKNAT VEEIPDVMIQEDVDNQLNQYLGDMQRQGIDPQTYFKLTNTTEDQLRSQLSANAAERVKTN LVLEAIAAKEGFEASKEEIDAEIKDLADNYNMSEKAVRNALSDEMLAHDISVRKAMDLIT DSAKQVAKAKLEEGSEDEEDK >gi|300497033|gb|AEAT01000056.1| GENE 8 8648 - 9838 1319 396 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 4 394 3 405 407 512 63 1e-145 MAEKEHYVRTKPHVNIGTIGHVDHGKTTLTAAITTVLAKKGLAKAEDYSQIDAAPEEKER GITINTAHVEYETEKRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREH ILLARQVGVNYIVVFLNKCDLVDDPELIDLVEMEVRDLLSEYGYPGDDVPVVRGSALKAL EGDEEAQKKIEELMDVVDEYIPTPERETDKPFLMPVEDVFTITGRGTVASGRIDRGTVKV GDSVEIVGLVEKVLTSVVTGLEMFHKTLDLGEAGDNVGVLLRGVDRDQIVRGQVLAAPGS IKTHKTFKGQVYILSKDEGGRHTPFFSDYRPQFYFHTTDITGEIELPEGTEMVMPGDNTE FSVTLIKPAAIEVGTKFTIREGGRTVGAGQVTEIDD >gi|300497033|gb|AEAT01000056.1| GENE 9 10020 - 10853 734 277 aa, chain - ## HITS:1 COG:no KEGG:Ldb0775 NR:ns ## KEGG: Ldb0775 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 274 1 274 275 493 98.0 1e-138 MTSVSQENLRKLAIEAEAGGDYQAACGHLEEALRLGFDEDLALDLSRFLRLNKEEDQAYA LIKALPDLFSRDKVLEEYGQVLTANNFLIEALQVKHLTEGEVDFPVLPADKKEQEKILLA FKKKQAVSQSQYEQLLKLDLPTYLAFARSLLLDPLANYALRLAVCEDLVKLGVKEEMQVM ILGDLKSFVPAETDLLKQDPVYREFITSLASRYQNRPSELPLILAEGNFAFGQLYPCQGD YVTNPDAFARDLTGFLRQKRGGESQNLLEKIYQKNSD >gi|300497033|gb|AEAT01000056.1| GENE 10 10840 - 12714 2723 624 aa, chain - ## HITS:1 COG:SPy1020 KEGG:ns NR:ns ## COG: SPy1020 COG0595 # Protein_GI_number: 15675021 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pyogenes M1 GAS # 1 561 1 552 553 556 51.0 1e-158 MSDKLKIMVLSGVREQGKNMFAVQVNDEIFVLDAGLKYPDSSLFGIDVVIPDMEFFKQYG DQVAGIFLTHGHADSIGALPYILRDWDIPVFGSKLTIELAKIDVELAKIDVQRENKRRNN QLFNVIDADTEIDFKNASVSFFHTTHSVPDSLGIVIHAPQGQIVYTGDFKFDPSARPAYR TDMTRLAEIAKNGVLALLPDSSNAEAVLPNASENEVGNYITNVFRNAKGRIIVAGKASNL NRVQQVFNAAAATSRRVLLTGRDVAKIVHTAMKMGYLEVPDGLLMKAKELKDVPDEKTVI LETGRMGEPLQSLQKMANNRHRTITIHEGDLVFIATTPSHAVETTVAITSDMVYRAGGTV IELGRNMHTSGHATGRDLQTLIDLLKPRILVPVIGDYRLLEAVKDLAVETGMDPDDVYIT QNGDCLEYDTKRGQFFRGDAVPGEDTMIDGSGVGDVGNIVLRDREVLSDDGIFIAVVTID RKKKKIVSEPQVTSRGFVYIKANQKLMNDSIQVIKDAIQANFEHKKFDWTELKQDMRSSL GKFLYKQTNRRPVVLPVVMEVNQNRHRAMQKKAEDAAEGNKEKPVKKPVKKNNRKKQTRP ANKSAKGKKPVNKNKKDSKADDKR >gi|300497033|gb|AEAT01000056.1| GENE 11 12932 - 13201 457 89 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773857|ref|YP_618837.1| 30S ribosomal protein S15 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 89 1 89 89 180 100 4e-45 MAVSKERKNEIIKEYATHEGDTGSVEVQVAVLTEDINNLTQHMREHSHDHHSYVGLLKKI GHRRNLLRYLQENDLERYRALIARLGLRR >gi|300497033|gb|AEAT01000056.1| GENE 12 13405 - 13656 381 83 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|104773856|ref|YP_618836.1| 30S ribosomal protein S20 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 83 1 83 83 151 96 3e-36 MPQIKSAIKRVKTQAVANERNAAQLSTMRTAVKKFKAAQAAGADNASELHVAAIRELDKA ASKGLIHKNKANRDKNRLAKLAK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:20:42 2011 Seq name: gi|300497012|gb|AEAT01000057.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00116, whole genome shotgun sequence Length of sequence - 22423 bp Number of predicted genes - 19, with homology - 19 Number of transcription units - 5, operones - 5 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 237 - 273 0.9 1 1 Op 1 11/0.000 - CDS 292 - 2187 3281 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division 2 1 Op 2 10/0.000 - CDS 2214 - 3599 1924 ## COG0486 Predicted GTPase - Prom 3637 - 3696 4.5 - Term 3614 - 3670 2.7 3 1 Op 3 22/0.000 - CDS 3707 - 4576 1149 ## COG0706 Preprotein translocase subunit YidC 4 1 Op 4 . - CDS 4576 - 4941 274 ## COG0594 RNase P protein component - Term 4960 - 4988 -0.1 5 1 Op 5 . - CDS 4990 - 5130 227 ## PROTEIN SUPPORTED gi|104774819|ref|YP_619799.1| 50S ribosomal protein L34 + Prom 5518 - 5577 6.5 6 2 Op 1 16/0.000 + CDS 5606 - 6970 1577 ## COG0593 ATPase involved in DNA replication initiation + Term 6984 - 7025 3.1 + Prom 7063 - 7122 10.8 7 2 Op 2 6/0.000 + CDS 7154 - 8281 1630 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) + Term 8307 - 8336 2.1 + Prom 8289 - 8348 5.6 8 2 Op 3 9/0.000 + CDS 8503 - 8736 206 ## COG2501 Uncharacterized conserved protein 9 2 Op 4 9/0.000 + CDS 8736 - 9881 1219 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 10 2 Op 5 24/0.000 + CDS 9865 - 11826 3137 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 11 2 Op 6 . + CDS 11839 - 14310 4000 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Term 14449 - 14484 -0.1 + Prom 14388 - 14447 12.5 12 3 Op 1 24/0.000 + CDS 14526 - 14819 494 ## PROTEIN SUPPORTED gi|104773264|ref|YP_618244.1| 30S ribosomal protein S6 13 3 Op 2 21/0.000 + CDS 14860 - 15438 548 ## COG0629 Single-stranded DNA-binding protein 14 3 Op 3 . + CDS 15465 - 15701 383 ## PROTEIN SUPPORTED gi|58336363|ref|YP_192948.1| 30S ribosomal protein S18 + Term 15727 - 15773 4.1 + Prom 15749 - 15808 5.4 15 4 Op 1 9/0.000 + CDS 15842 - 17863 780 ## PROTEIN SUPPORTED gi|85057286|ref|YP_456202.1| exopolyphosphatase-related protein 16 4 Op 2 16/0.000 + CDS 17886 - 18341 733 ## PROTEIN SUPPORTED gi|104773268|ref|YP_618248.1| 50S ribosomal protein L9 17 4 Op 3 . + CDS 18365 - 19735 1742 ## COG0305 Replicative DNA helicase + Term 19747 - 19795 11.5 - Term 19734 - 19783 9.3 18 5 Op 1 . - CDS 19784 - 20941 1386 ## Ldb0013 hypothetical protein - Prom 20964 - 21023 2.5 - Term 21060 - 21101 -0.9 19 5 Op 2 . - CDS 21212 - 21931 430 ## COG0675 Transposase and inactivated derivatives - Prom 21979 - 22038 6.6 Predicted protein(s) >gi|300497012|gb|AEAT01000057.1| GENE 1 292 - 2187 3281 631 aa, chain - ## HITS:1 COG:lin2942 KEGG:ns NR:ns ## COG: lin2942 COG0445 # Protein_GI_number: 16802001 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Listeria innocua # 1 631 1 629 629 821 66.0 0 MKTYVSNEYDVIVVGAGHAGCEAALASARMGEKTLLLTIGLDMVAFMPCNPSVGGPAKGT VVREIDALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKWDYHEEMKRTIENTPNL TLRQAVVDDLIVEDGECRGVVTNTGARYRAKSVVLTTGTAARGRIFIGELNYSSGPNNTI PAIKLSESLERLGFKLRRFKTGTPPRVNRHTIDYSKTEEEPGDKEPRHFSFTSRDEDYLT DQTSCWMTYTNPKTHEIINENLDRSPMFSGDIVGVGPRYCPSIETKVVRFADKDRHQIFL EPEGRKTEEIYVGDFSTSMPEEVQLEMLHTVAGLEKVEMMRPGYAIEYDVVDPWQLTHTL ETKRIKHLYMAGQMNGTSGYEEAAGQGLIAGINAALSAEGKPAFTLGRDEAYIGVLIDDL VTKGTEEPYRLLTSRAEYRLLLRHDNADLRLTEKGHDLGLIDDDRYAEFLVKKELIQEDL DRLHEITVHPTIAVNEYLAGLGQTDLNGGVKADVFLRRPRVTVEDVERLTGQKLAGDRYV KEQVEIDIKYAGYIKKQEIQVARLRRQEAKKIPKDIDYDQIEGLATEAREKFAKIRPETL AQAERISGVNPADLAILSVYIQNGKYAKVQK >gi|300497012|gb|AEAT01000057.1| GENE 2 2214 - 3599 1924 461 aa, chain - ## HITS:1 COG:SPy1071 KEGG:ns NR:ns ## COG: SPy1071 COG0486 # Protein_GI_number: 15675063 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pyogenes M1 GAS # 7 461 6 458 458 507 61.0 1e-143 MVQRLTEFDTIAAISTPLGEGGISIVRVSGEDAVAIVNRLFKGKDLEKVPSHTINYGHIV DPATGQVIDEVMASVMLAPKTFTKEDIVEINCHGGIVVTNDILQLLLANGARMADPGEFT KRAFVNGRIDLTQAESVMDIIRAKTDKARQVAVKQLSGGLLTEIRALRQEILDVLANVEV NIDYPEYDEEEVTAQKMLACAEAVSGKIDRLLETAQEGQILRNGLKTAIVGRPNVGKSSL LNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTEDQVEKIGVERSKKA IAQADLILLLLDGSQELTEEDRRLLELTAGKKRIIVLNKTDLGQKLTAAEIAKESGSEVI STSIMMKENLDELEALIKKLFFKGIENSNDQVLVTNQRQAGLLAKAKQQLADVASGLESG MPVDLVQIDFTGAWESLGEITGDSAPDELINDLFSQFCLGK >gi|300497012|gb|AEAT01000057.1| GENE 3 3707 - 4576 1149 289 aa, chain - ## HITS:1 COG:L131778 KEGG:ns NR:ns ## COG: L131778 COG0706 # Protein_GI_number: 15672111 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Lactococcus lactis # 39 289 24 269 269 238 48.0 1e-62 MKDILSKKSTKRLLAALALVTVFALVLSGCATQTTQKPTPISHNSSNWWDAWVVYYLSQF VLWIAKVCGGSYGWAIIIFTVIIRVILLPLNAVQINSTRKMQEIQPELKALQEKYSSKDL ETRNKLNEETQKLYKEAGVNPYAGCLPMVIQLPVMWALYQAIWRTPEMQNGKFLWMDLGK PDPYYILPILATVFTFLSSYIATLSVPKSSQTTMTKMMSYVMAIMVGIWAIVFQSAISLY WVISNLFQVGQTLVLQNPFKYRKEQEAKEEAERERQRKMRRAYKRIKRK >gi|300497012|gb|AEAT01000057.1| GENE 4 4576 - 4941 274 121 aa, chain - ## HITS:1 COG:lin2987 KEGG:ns NR:ns ## COG: lin2987 COG0594 # Protein_GI_number: 16802045 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Listeria innocua # 1 120 1 119 119 100 43.0 9e-22 MRKSYRVKSEQDFQTVFENGESVANRAFVIYVLPRKQNKHFRVGISVGKKVGHTAVVRNR LKRYIRAVLTENRDRIAPDLDFLVIARPYARDFDWEKTRENLLHALNLAHVIEEMPNKEE K >gi|300497012|gb|AEAT01000057.1| GENE 5 4990 - 5130 227 46 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104774819|ref|YP_619799.1| 50S ribosomal protein L34 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 46 1 46 46 92 97 3e-18 MSTKRTYQPKKRHRSRVHGFMKRMATSNGRKVLARRRAKGRNVLSA >gi|300497012|gb|AEAT01000057.1| GENE 6 5606 - 6970 1577 454 aa, chain + ## HITS:1 COG:BH0001 KEGG:ns NR:ns ## COG: BH0001 COG0593 # Protein_GI_number: 15612564 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Bacillus halodurans # 1 452 1 447 449 421 48.0 1e-117 MFDLEKFWDSFNAEMRSEFNEVSYNAWFKNTKPVSFNKDTHELVISVQTPVAKGYWEQNI SANLIQSAYAYAGIDIYPVFVVKNGPASSSERMLEPQPQAKPEKARPQGREFTKDLRLNE KYTFENFIQGEGNKLAAGAALAVADNPGTFYNPLFIFGGVGLGKTHLMQAIGHQMLAERP DAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTADLLLVDDIQFFAKKEGIQEEFFHTF ETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRKKAESEG LEIDESTLDYVASQVDTNIRELEGALVKVQAQATIQKQDINIGLARSALADLKLVQKSRG LQISKIQEVVANYFQTSVPDLKGKKRVRQIVIPRQIAMYLSRELTDASLPKIGQEFGGKD HTTVMHACDKIARQIKTDTEIKSAVSDLRQMLER >gi|300497012|gb|AEAT01000057.1| GENE 7 7154 - 8281 1630 375 aa, chain + ## HITS:1 COG:lin0002 KEGG:ns NR:ns ## COG: lin0002 COG0592 # Protein_GI_number: 16799081 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Listeria innocua # 1 375 1 381 381 288 42.0 8e-78 MKFTVQRNLFINDLNSVLKAVSSRAQIPILSGIKLDLTETELIMTGSNADISIELSQPVS DDLRVESTGSIVVTAHLFSEIVRKLPGREFTFEVKEGNQIQITSDKADYVINGLDASAYP RLPEIAGTSFSLPPKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIKAVATDSHRLS QRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLSFYTRLL EGAYPDVDRLLPTESTTSVQFAVSDLMQTLSRASLLTHANRTNAVQMTLNVADQTVLVSG NSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRASVTDSVIINFTESLRPFTVVPND QSVEFVQLITPIRTF >gi|300497012|gb|AEAT01000057.1| GENE 8 8503 - 8736 206 77 aa, chain + ## HITS:1 COG:BH0003 KEGG:ns NR:ns ## COG: BH0003 COG2501 # Protein_GI_number: 15612566 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 8 67 3 62 73 67 50.0 5e-12 MVKVKTIETFAINGEFITLGQFLKDECIVSSGGQAKWYLKDSPVLVNGDKEDRRGRKLYP GDRLSVAGKEYELVQGL >gi|300497012|gb|AEAT01000057.1| GENE 9 8736 - 9881 1219 381 aa, chain + ## HITS:1 COG:lin0005 KEGG:ns NR:ns ## COG: lin0005 COG1195 # Protein_GI_number: 16799084 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Listeria innocua # 1 369 1 367 370 332 49.0 5e-91 MYLGRFKQSGFRNLALLDLEFDPHVNVFLGENAQGKTNLLEAIYFLALSRSHRTSNDREM IAFGQDFASLAGRVHKRQLDLDLRIVISKKGKSAWVNRVEQARLSKYVGHLNAILFSPED LELVKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQVLLGV LTEQVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAKEITAADQPAQ IKQKMLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKNAHLFASQGQQRTIALSLKLAE IQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFIHGQTQTFITTTDLDGISQEIVKQPR IFYIHSGKIIEKEEGLNGRRR >gi|300497012|gb|AEAT01000057.1| GENE 10 9865 - 11826 3137 653 aa, chain + ## HITS:1 COG:lin0006 KEGG:ns NR:ns ## COG: lin0006 COG0187 # Protein_GI_number: 16799085 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Listeria innocua # 18 652 13 645 646 826 68.0 0 MADEDNKLKKAKQFEREADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIID NGIDEALAGFATKIEVTVNEDNSVTVQDDGRGIPVDIEKKTGRPAVETVYTVLHAGGKFG GGGYKVSGGLHGVGASVVNALSTKLNVTVMRDGKKYHIAFDHGRVVEELKEVGTVPLTEH GTIVHFWPDPNIFTETTVFDDKILKNRIRELAFLNKGLKLTFTDKRKDTAETDVYHFEGG IKEYVSFLNRGQEVLFDEPIYVEGKYEGIDVEVSLQYTTGYKTTLMTFANNIHTYEGGMH EAGFKTALTRVVNDYAHKAKILKENDDNLSGEDIREGMTAVISVKHPNPQFEGQTKTKLG NSDARTAVDRAFSETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEIA NLPGKLADNTSNDPNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRI LANQEIRTLVTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMI DKGYVYIARPPLYQVRQGKLIKYLDTDEELHDYLGSLQPSPKPIVQRYKGLGEMDAEQLW ETTMDPENRRLDRVDPGYAKDADEVFEMLMGNEVGPRRKFIEDNAQYVENLDA >gi|300497012|gb|AEAT01000057.1| GENE 11 11839 - 14310 4000 823 aa, chain + ## HITS:1 COG:SP1219 KEGG:ns NR:ns ## COG: SP1219 COG0188 # Protein_GI_number: 15901081 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pneumoniae TIGR4 # 8 822 2 819 822 1025 63.0 0 MDNENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELA VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESG KGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESD QSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKFLTLKQMLQYYLAH QEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFDLD DRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDIQK RFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQNRGGRGIKGM GVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIVNLLQLDKGEH IQTVVNLPQGHDDDYAFFITKLGTVKRTKIREFENIRTNGLIALTLKDGDELSNVLTTDG QQNILIATHQGYAVTFNEDDVRAMGRSAAGVRGINLREGDYVVGSGILKPEDEVLTISEK GYGKRTAASEYPVKGRGGKGIQTAKIGEKNGPLAGVAVVDGQSDIMLITTDGIMIRFKTS DVSQTGRSTMGVRLIKVADGNAVASMAVVPAEAEGESEPETEV >gi|300497012|gb|AEAT01000057.1| GENE 12 14526 - 14819 494 97 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|104773264|ref|YP_618244.1| 30S ribosomal protein S6 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 97 1 97 97 194 100 3e-49 MTTKYEITYIIKPDVDDEAKKAIIDKYTKVIADNGGEMVEAKDWGKRRFAYEIEKYREGS YYIMTFTAEDAAAVNEFARLSKIDDSVLRSMTVKLDK >gi|300497012|gb|AEAT01000057.1| GENE 13 14860 - 15438 548 192 aa, chain + ## HITS:1 COG:L0302 KEGG:ns NR:ns ## COG: L0302 COG0629 # Protein_GI_number: 15674172 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Lactococcus lactis # 1 192 1 166 166 150 47.0 1e-36 MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAEN FCNFTSKGSLVGIQGRIQTRNYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNGGFGG QGQSQNTGFNTGFGGDSGYANNNAFGSPAQSNGPANAGFNEDNKKDAGGDTNTNPFDSSD DAINVSNDDLPF >gi|300497012|gb|AEAT01000057.1| GENE 14 15465 - 15701 383 78 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58336363|ref|YP_192948.1| 30S ribosomal protein S18 [Lactobacillus acidophilus NCFM] # 1 78 1 78 78 152 97 2e-36 MPQQRRGGRRRRKVDFIAANHIDYVDYKDVDLLKRFISERGKILPRRVTGTSAKNQRKVA NAIKRARIMGLLPFVAED >gi|300497012|gb|AEAT01000057.1| GENE 15 15842 - 17863 780 673 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|85057286|ref|YP_456202.1| exopolyphosphatase-related protein [Aster yellows witches'-broom phytoplasma AYWB] # 36 661 64 685 849 305 31 8e-97 MKNFLRKLELPEFVRDSRLIIAFSSIAFLTVLSTVVAFFINRIFGVALLLVLIVDVFWVV FGVYILAKNTNNYAANLSYRIKRGEQEAMIKMPLGILLYDESRHIQWVNPYLQLYLGDKD AIGKTITAVDRKLGKLVEEALEAQTSESKVVKWGDHQFEMVVQDSIGVIYLLDITRYADL ADKYRAERLAIGQIFVDNYDELSERMHDQELARTSTYLQTTLNDYAKKFKAYLKRIDEDH FLLLAHLQDLEAMEEDKFSVLDKIRLETSRNNTPLTLSVGIAYGGESLRKIANQAQANLD LALGRGGDQVVLRELGQVARFYGGKSNPMEKRTRVRARMVSQALGELFKDVDQVFVQGHQ RPDMDSVGSGIGVVKIARLHGVKAHFLLDTAHCNYDVDRLVKKMQAAEPQLDLFVSPDEA NAVATDNSLLVMVDHSKYSITYDQRLYDRLRNRIVVIDHHRRGEEFPENPMLTYVEPYAS SASELVTEMVEYQQPAEDNRVLTNLEATAMLAGITVDTKEFSLRTGTRTFDAASYLRSIG ADSSVVSELLKEDISSFLVKSHLVASLQMLRPKMAVMQGPEDKVIDPILTAQAADMALDL EGVSASFAITRRSGDKVGISARSMGNINVQVIMEKLGGGGHLSNAATQIKDITVKEASQR LLAAIDEYLEENS >gi|300497012|gb|AEAT01000057.1| GENE 16 17886 - 18341 733 151 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|104773268|ref|YP_618248.1| 50S ribosomal protein L9 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 151 1 151 151 286 97 6e-77 MKVIFMQDVKGRGKRGQVKDVPDGYAQNYLIKRGLAKEANKGNLNTLKRVEANEKAEYEA QKAAAQEIKKQLEADETVVELKSKAGSDSRLFGSISSKKIIEGLDKQFGIKLDKHKLELR EPIKVLGYTNVPVKLFKGVESKVRVHVTQEN >gi|300497012|gb|AEAT01000057.1| GENE 17 18365 - 19735 1742 456 aa, chain + ## HITS:1 COG:L0286 KEGG:ns NR:ns ## COG: L0286 COG0305 # Protein_GI_number: 15672728 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Lactococcus lactis # 10 449 11 450 455 423 54.0 1e-118 MDNLVTQQIPHDSAAEKAVLGAIFIDPEVINEVSSVLEPADFYEHANRLVYSALLALYDE SRSIDLVTLQEELKRRGQLEELGDMAYVSELLLATPTAFHAKDYARIVHQKAQLRNLINA SQKIISSAIQGSDSVDEILSNAENEIMNVSNEKGSGGFHKIEDLVAGAFEQISNNAQNQD AVTGLRTGFAYLDEMTTGLHDDELIILAARPGVGKTSFAMNIAKNVGITEKKPVAVFSLE MSGEQLVQRMLASTGLIDSQHLRTGILDRDEWNQLDMAASVLRQAPIYIDDTPGIKISEI RAECLALQKELGDLGLVVIDYLQLIEGPKTESRQQEVSAISRQLKKMAKELHVPVISLSQ LSRSVEQRQDKRPILSDLRESGSIEQDADIVGFLYRDDYYRDEDADGEEPKEDPENVEVE VIIEKNRSGRRGSAKLMFSKPYNRFSNLDPGHEAQG >gi|300497012|gb|AEAT01000057.1| GENE 18 19784 - 20941 1386 385 aa, chain - ## HITS:1 COG:no KEGG:Ldb0013 NR:ns ## KEGG: Ldb0013 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 385 1 385 385 792 97.0 0 MASTLDYLRWRGDLPFQACPFNSLDASLMASLAYLPFDGSTVGHSLGEVCQSIYQREPDR WQNLDKTELLLLPKSPRLADLTVLDWVNKMEIEPEPIQFNAGAFRLDDRTILVAYRGTDQ SMIGWSEDMVMNYTPEITGHRLAAKYLNQIGQAYPNDRIYITGHSKGGNYAHYALAFADP QIQARVIKSYSFDGPGYRHQIYGTSGFQDNIKKMKTYIPESSIVGCMLDHTERVLVVKCN QPVLSQHDPRTWSVGRDSYVLAQEGLTATARVIRHSLIAFNYQIPAEKREQMWSALFEAF GSLDITKIKQISGFTGTYRFGRAYFAMDPEMRAIFRQIFNNIIETARQSLTLPFNRSEDP YKNRPNFNDSKKGPIFFDAYDIKQE >gi|300497012|gb|AEAT01000057.1| GENE 19 21212 - 21931 430 239 aa, chain - ## HITS:1 COG:Ta1471 KEGG:ns NR:ns ## COG: Ta1471 COG0675 # Protein_GI_number: 16082436 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Thermoplasma acidophilum # 79 182 58 161 237 84 40.0 1e-16 MTEQIEEVPAELIQTRVYELRPNETMRRVLDEACDYRRYCWNQGLALWNEMYKARQALKS SLASDSKKRVQNGAAACESKNYLKTKAKLQACYRKASNIQNDLMHKFTTELVNDYDKIVI ENLSVKGMLMSYIASKGVHRSMFGKFKQILTYKCDWYGKDLILANKLYPSTQRCAACGNV KKGDDKITLYGNKKHGTKHNEYICYNKKCPNYNKVVDRDKNAMLSLLALTEHPELNHAL Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:20:55 2011 Seq name: gi|300497007|gb|AEAT01000058.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00026, whole genome shotgun sequence Length of sequence - 3789 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 412 164 ## COG3328 Transposase and inactivated derivatives - Prom 518 - 577 6.5 + Prom 523 - 582 9.0 2 2 Op 1 . + CDS 650 - 2728 696 ## COG2217 Cation transport ATPase 3 2 Op 2 . + CDS 2766 - 2990 231 ## LDBND_0792 hypothetical protein + Prom 3024 - 3083 3.3 4 3 Tu 1 . + CDS 3250 - 3597 407 ## PROTEIN SUPPORTED gi|148984516|ref|ZP_01817804.1| 50S ribosomal protein L9 Predicted protein(s) >gi|300497007|gb|AEAT01000058.1| GENE 1 1 - 412 164 137 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 137 1 137 391 155 54.0 2e-38 MTDFKKECLNALLNKEKFDEFMRTQLEEGLDQLLESELTAFLGYDPYAREGWNSGNSRNG SYFRKVKTQFGPIKVQVSRDRKGEFHQHTLPAYVQHTDTLEATVIQLYSHGVTTREISDL IDKMYGSYYSAGTVSNI >gi|300497007|gb|AEAT01000058.1| GENE 2 650 - 2728 696 692 aa, chain + ## HITS:1 COG:L70979 KEGG:ns NR:ns ## COG: L70979 COG2217 # Protein_GI_number: 15672833 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 692 1 695 695 1217 96.0 0 MSNKTHSSNHEEMMSEHHHNHEMVDMKHENHEMHNMHNMHNMDNMDMMNHGGHMMHMGDM SKKLKVAIILMIPLLLISPIAGFTILKFPGSEILQLILGTIIFFYSGTPFFSGAKGELKS RKPAMMMLITMGITAAYAYSVYATIMSLNGHMVMNFWFELATLIVIMLIGHLIEMKAIMG AGDALKDLASLVPKKAHLKSGKDVELSELKVGDLLLVKENEKIPADGIILSEALVDESMI TGESQAVNKKPNDLVYGGSLNLNQPFEMKVTTLGKDSFLNQVAELVKKAQAQKSNLENMA DRVAGYLFYAALIVGIFSLIFWTISSNFSFALLLAVSVFVIACPHALGLAVPLVVSRLTS ISAKNGLLIQNRTSLEKINTIKYALMDKTGTLTDGKFIVRDVIDFTGETDILQIMAALEG SSTHPIAQSIVAAAKPLENLKVEAVENIPGVGIKGQVNQNFYQIVNYKYLRENQLSYDEQ KIAQYLDLGLTVSFLINEQQDVLGFIALGDSPKADAKAFINGLLAQGITPVMLTGDNKET AQKVASALNIPEFRAELKPQDKAEIVKEYQKKAGVLFIGDGVNDSPALATATIGFAIGAG TSVAISTADVVLVNSNPSDVLDMINISKRMLRKMKQNLWFGAGYNIIAIPVAAGILYPFT GIYIDPLIAAVLMSISTVIVSINAMGLRYDKK >gi|300497007|gb|AEAT01000058.1| GENE 3 2766 - 2990 231 74 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0792 NR:ns ## KEGG: LDBND_0792 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 34 74 1 41 41 64 100.0 1e-09 MLQIIASLAPYLLILVCPLMMIFMMRGMHGGHNMHGGHNMKSQDMIRQDEEIAQLKAKNE QMAKDLAELKVKRK >gi|300497007|gb|AEAT01000058.1| GENE 4 3250 - 3597 407 115 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148984516|ref|ZP_01817804.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP3-BS71] # 1 106 2 107 107 161 70 9e-40 MINLAELGRVFIVCGKTDIRRGIDSLAYIVKKSFNLDPFSGCVFLFCGSRRDRFKALYWD GQGFWLLYKRFENGKLAWPNNEDEVRELSDEQVMRLMQGFTIDPKINTARAREFY Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:20:57 2011 Seq name: gi|300497006|gb|AEAT01000059.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00146, whole genome shotgun sequence Length of sequence - 825 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 33 - 120 63.1 # Ser TGA 0 0 + TRNA 130 - 203 76.8 # Met CAT 0 0 + TRNA 207 - 280 71.0 # Asp GTC 0 0 + TRNA 287 - 359 78.7 # Phe GAA 0 0 + TRNA 368 - 449 66.8 # Tyr GTA 0 0 + TRNA 454 - 524 56.9 # Trp CCA 0 0 + TRNA 538 - 613 64.0 # His GTG 0 0 + TRNA 640 - 710 67.1 # Cys GCA 0 0 + TRNA 739 - 823 60.0 # Leu CAA 0 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:21:01 2011 Seq name: gi|300496996|gb|AEAT01000060.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00230, whole genome shotgun sequence Length of sequence - 11182 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 6, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 7 - 66 7.8 1 1 Op 1 . + CDS 97 - 1404 1770 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 2 1 Op 2 . + CDS 1382 - 1648 219 ## Ldb0294 hypothetical protein - Term 1647 - 1688 6.2 3 2 Op 1 7/0.000 - CDS 1718 - 3010 428 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 4 2 Op 2 . - CDS 3040 - 3609 796 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins + Prom 3867 - 3926 5.6 5 3 Op 1 13/0.000 + CDS 3964 - 5121 1713 ## COG0516 IMP dehydrogenase/GMP reductase 6 3 Op 2 2/0.333 + CDS 5121 - 6674 2222 ## COG0519 GMP synthase, PP-ATPase domain/subunit + Term 6699 - 6740 7.2 + Prom 6716 - 6775 14.1 7 4 Tu 1 . + CDS 6827 - 8428 179 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 8439 - 8471 3.1 8 5 Tu 1 . - CDS 8464 - 9306 523 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 9438 - 9497 5.3 + Prom 9364 - 9423 1.9 9 6 Tu 1 . + CDS 9463 - 10935 1871 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 11015 - 11054 8.1 Predicted protein(s) >gi|300496996|gb|AEAT01000060.1| GENE 1 97 - 1404 1770 435 aa, chain + ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 3 430 6 426 426 344 42.0 2e-94 MYDYRYEPHRVIFMIDNKSFYASCEALRLGLNPMEVALAVVSQQPGTDWGSGLIMAASPL AKKKYGLSNVMRARDLPPKDQAPDLMLVEPHMYLYIKRSMEVLQIFRKYAADEDIHVYSI DESMIDMTESWHLFGDDPYLVARKIQKDIHDSLGLYTTCGIGENPLLAKLAMDISAKHRT SMIACWHYIDVPDTIWKIPKLEDVWGINVKTANRLRRLGINNMYGLAHSDPAILKKEFGV IGDQLFAMSWGVDRSIIKQKYRPKSKSYGNSQILSRDYEDQREIEIVIQEIGDQVAARIR AQHLLAGRVSLYVGYADYEADPAGFSIQEKITPTDISSDLVAKLRALFRRKWRGQAVRRL GVTYSNLAPAGCQQLTFFLPPAEQIKQQKRDQVVDKLRKKYGFASVVRASSLLPGATAIA RSRLVGGHNGGNAYE >gi|300496996|gb|AEAT01000060.1| GENE 2 1382 - 1648 219 88 aa, chain + ## HITS:1 COG:no KEGG:Ldb0294 NR:ns ## KEGG: Ldb0294 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 88 1 124 124 152 69.0 5e-36 MGATPMSKEFDQRVTDFFAHYQDRGMKKWAGFFLSDHTAMINKETRQKSVPDRAEIVGFV QGYAEDKVVIGEHVIALDDLRRVLLLSD >gi|300496996|gb|AEAT01000060.1| GENE 3 1718 - 3010 428 430 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 11 430 15 427 447 169 27 8e-42 MDQTQEPSQGRSFVLGLQHLLAMYSGAVAVPILIGNALHFNSEQLTYLVSIDIFMCGLAT LLQLLRNRYFGIGLPVVLGCAIQAVAPLEMIGQKYSIGTMYGSIIVAGVFVFLIAGVFSK IKKLFPPVVTGTLITTIGLTLIPVGIQNLGGGSATAKDFGDPKNLLVGCVTILVIVALQA FAKGFIASISILIGLIVGTLLAACLGMVSLTPVSEAAWLHFPQFFYFGLPKFEWSSSLTM MIIALVSMVESTGVFFALGDLLGKDITEDDLKRGYRAEGLAQIFGGLFNTFPYTTFSQNV GLLQLSGIRSKRPIYWAAGLLMAMGLLPKVGALVTIMPTAVLGGAMVVMFSSIAVQGIKM LLKVDFSDNHNLLIVAISLGLGLGVSVYPTIFQALPSELQLFLENGIVIASISSVLLNLI FKGKKGLDEK >gi|300496996|gb|AEAT01000060.1| GENE 4 3040 - 3609 796 189 aa, chain - ## HITS:1 COG:BH1514 KEGG:ns NR:ns ## COG: BH1514 COG0503 # Protein_GI_number: 15614077 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Bacillus halodurans # 1 188 1 188 198 213 56.0 2e-55 MELLEERIKKDGVVLPGDVLKVNSFLNHQIDPQLMMTLGQEFARLFKDAGVTRVLTAEAS GIAPGIMAAYCLGVPMVFARKKKPSTVTDAVYAAEVFSYTKQVTNTISVEAKFLDANDRI LVIDDFLANGEAAKGLISLAEQAGAEVVGVGVVVEKAFQGGHDWLVNHGYHLEALASIKE FADGQVIFN >gi|300496996|gb|AEAT01000060.1| GENE 5 3964 - 5121 1713 385 aa, chain + ## HITS:1 COG:SP2228_3 KEGG:ns NR:ns ## COG: SP2228_3 COG0516 # Protein_GI_number: 15902032 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Streptococcus pneumoniae TIGR4 # 101 380 3 279 281 390 75.0 1e-108 MSLWETKFAKEGITFDDVLLIPAESHVLPNEVDLSTQLAPNLKLNIPLISAGMDTVTEGR MAAAMAKMGGLGVVHKNLSIQAQADEVRLAKNTPVTAEDTHAAVDKDGKLLVAAAVGVTS DTFERAEALFEAGADAIVIDTAHGHSAGVLRKIKEIRDHFPHNTLIAGNVATAEGTRALF EAGVDVVKVGIGPGSICTTRVVAGVGVPQLTAIYDAADVAREFGKPIIADGGIKYSGDVV KALAAGGNAVMLGSMLSGTEEAPGDVQQGSDGRLVKSYRGMGSVGAMSQQHGSSDRYFQG GVNEANKLVPEGIEAVVSYKGTVSNVVYQILGGLRSGMGYCGAENIDKLIETAQFVRISN AGLRESHPHDVMMSKAAPNYGGIDF >gi|300496996|gb|AEAT01000060.1| GENE 6 5121 - 6674 2222 517 aa, chain + ## HITS:1 COG:BH0607_2 KEGG:ns NR:ns ## COG: BH0607_2 COG0519 # Protein_GI_number: 15613170 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Bacillus halodurans # 203 517 1 315 315 485 72.0 1e-137 MAKIDLSNFDKIIVLDFGSQYNQLITRRIRDFGIYSELLPHTITAEEVKKIAPKGIIFSG GPNSVYDENALDVDPEIFELGIPILGICYGMQLMTQKLGGTVEKAGEAEYGSAHIEVKEA DSPLYKGLPEKQVVWMSHGDLVTKVPEGFEVLASSKNCPIASMADPDRKFYAIQFHAEVR NSEYGLDILRRFAFDVCGAKDNWTMDDFIKLSVDSIREEVGDANVILGISGGVDSSVTAT LLHKAIGSQLTAIFVDHGLLRKNESDEVMAALKEGLGVNIVRVDAKDRFMSKLAGVTDPE KKRKIIGNEFVQVFNDEAEKIKDAKFLAQGTLYTDVIESGTDTAHTIKSHHNVGGLPEDM QFKLIEPLRQLFKDEVRVLGEKLGLPHDLVWRQPFPGPGLAIRVIGEITEEKLRIVRDAD AILREEVKNAGLEESIWQYFVALPGMRSVGVMGDGRTYDYAVCIRAVTSIDGMTADFAQI PWDVLQKISVRIVNEVKQVNRVLYDVTSKPPATIEYE >gi|300496996|gb|AEAT01000060.1| GENE 7 6827 - 8428 179 533 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 309 515 8 223 329 73 30 6e-13 MYYSDFIKGNRVRFIAIILLVIGGSALLAGNNALLTLLGDSLRKGNLLLFVSIIGINVVV DSIGSSLSYIANYLYDKQTQEYFHKLRFAEVEKIYNSGNKAPKVSSVQNSLTQDLNMLGE NFLAPWLKIAACGLDVVLSSIIVFTYSWLLLLVILFLAVLMFFMPQFLSPALQKAMDDIS NENKRYLDMLEKWFSGLSVLQRYHVKQKLLAVTTAQGKRLEDANVRRSGRMQVASGVNNA ANVLSQALILLVSGVLIITGRMNFGVFFSIGNFASTIFTELGVVVNQYTILQSSKTLNAK LRKQLAVQTDHLEKTESLDHFQSLSVQALSVAFSNEEKITYPDFQIKRGEKILLSGDSGT GKSTLFKLILQELPLATGKICFKNEAGQEIERPDLSQIGYVPQDPVLFPGTIKENITMFN SKLNDRVMHFVKQVNLEKDLAKFPAGVDTELDQGKHALSGGQRQKVVLARAQIHDSQLIF IDEGTSAIDTHNGLEILQNLLQTDATIVFIAHNLTEEMRQLFDREIHLSNTAG >gi|300496996|gb|AEAT01000060.1| GENE 8 8464 - 9306 523 280 aa, chain - ## HITS:1 COG:CAC1333 KEGG:ns NR:ns ## COG: CAC1333 COG2207 # Protein_GI_number: 15894612 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Clostridium acetobutylicum # 31 276 35 286 286 72 25.0 1e-12 MPIAYEEIDNLARLPFKFFKRSNYAPKAPTHWHTGIEIDYLVSGEDFKVVIAGQTHHYNS GDIWAIDSSQIHAATGHKDRYYYVMGLIIDNNFLEKEYPSSKNWRIKMDHISRDTASYRQ LRKNLITIAELVDQPISDSIRFLILSEFFQMIALIDSEYTEKTAVTTPPNQSLADTVIAY IANNSSTNITAQSIAEHFRISQVTLNKELSQVTKLPLGKYLKQVRLMHARYLLLSTNYSV AYIANYCGFSSAKVLERNFKAWKKMTPSQYRKAFSKYFNE >gi|300496996|gb|AEAT01000060.1| GENE 9 9463 - 10935 1871 490 aa, chain + ## HITS:1 COG:CAC1405 KEGG:ns NR:ns ## COG: CAC1405 COG2723 # Protein_GI_number: 15894684 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Clostridium acetobutylicum # 5 490 4 472 473 527 53.0 1e-149 MAHFRKDFLWGGAVAANQVEGGYNEGGKGLSVTDITTAGSLESPRYLTYTLDGKDGKVAG MFASSLPKGAKGKIFDNEYYPNHVAIDFYHHYKEDIKMFADMGFKVFRTSIAWTRIFPTG EEDKPNQEGLDFYRRVFEELKKNGIEPLVTISHYEDPLALGEKYNDWQDRKMIDLYVKYA TTLFKEYKDLVKYWLTFNEINSSLMFLKLVGDGKASDADYQKAYQKLHHQFVASAKAVVA GHKINPDFMIGNMIAGSVYYPGTPDPKDALAARYEEELSQLYCADAQAKGEYPSFAKRLW DEHNVHLKIEDGDLEVMKEGKVDMYTFSYYMSNMVTTHDVGEKAKGNFAAGAKNPYLEYS EWGWSTDPDGLQLYLEKMYDRYGIPMMVVENGLGAVDKLEDGTVHDDYRIDYLRKHIKAM DKAVEHGVDLLAYTTWGCIDCVSAGTGQMSKRYGFIYVDRDDKGEGTLKRLPKDSYYWYQ KVIASNGDEL Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:21:07 2011 Seq name: gi|300496988|gb|AEAT01000061.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00060, whole genome shotgun sequence Length of sequence - 9287 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 2, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 120 - 179 6.1 1 1 Op 1 . + CDS 210 - 1349 1282 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 2 1 Op 2 . + CDS 1353 - 2780 1815 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 3 1 Op 3 3/0.000 + CDS 2831 - 3565 1085 ## COG1922 Teichoic acid biosynthesis proteins 4 1 Op 4 . + CDS 3565 - 4665 1083 ## COG0438 Glycosyltransferase 5 1 Op 5 . + CDS 4662 - 5363 1011 ## COG3774 Mannosyltransferase OCH1 and related enzymes + Prom 5374 - 5433 7.0 6 2 Op 1 . + CDS 5468 - 6298 1290 ## COG0171 NAD synthase + Term 6400 - 6436 1.6 + Prom 6300 - 6359 2.6 7 2 Op 2 . + CDS 6504 - 9170 3888 ## COG0474 Cation transport ATPase + Term 9190 - 9223 4.5 Predicted protein(s) >gi|300496988|gb|AEAT01000061.1| GENE 1 210 - 1349 1282 379 aa, chain + ## HITS:1 COG:MTH365 KEGG:ns NR:ns ## COG: MTH365 COG1887 # Protein_GI_number: 15678393 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Methanothermobacter thermautotrophicus # 75 378 109 409 409 133 30.0 5e-31 MKSILFRLYLAVMKFLARWRKEDPNTYVILNGAGRSGSNGYLFYKYLRREHPEVTAYLIE PWPSSHLPWSDWQKIGRAKYVLTTHQPFKVRKSQVNLALWHGIPLKRMGTMANNTQRRDN QRNEKLWHKTADLVTSSSELYESLMSACMGIEGPRYVQLGFPRIDSLLKSPYKKSQLLAD FFSCQDPEAQVGIYVPTFRYELEEPEVMERIKEGNFFAFSDFDLAALDQALAARKQYLLV KLHPWEMKLFSDFHLEAKHVAFLNNSDLLAKKLDLYEILGATDFLMTDFSSIYFDYLHLD KPLIFITNYLAQYEKTRGFLLGPYEKIVPGPCVASQADLVKQLGEKDGYGLERKKWLELS DQADHGQACQTIFDYLSGV >gi|300496988|gb|AEAT01000061.1| GENE 2 1353 - 2780 1815 475 aa, chain + ## HITS:1 COG:SA0127 KEGG:ns NR:ns ## COG: SA0127 COG2244 # Protein_GI_number: 15925836 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 7 394 9 397 476 143 25.0 8e-34 MKKTFLNIFYNAVYQVFLVLVPLITVPYLSRVLGPTTYGIYSSVNNTVQFLMIFCVLSLS NIGVRSISKARAKSKSGELTEAFWGLWYFQFIGGLVTIALTVLTCLVLKVRYWNYFLLML PYLIAAQFDISWFFQGLADFGRVVLRNTIVKIVSVVFILLLIKSPADLWKYFLIMSVSTM LGSFVFWFSIGKYVGRPVKHFYYFAETRRAIMTLMIPQIATQIYTSLDKPLLGLFQNTAQ VSYYDNSQRISNMILGVITSISLVIMPQMAVQGKETQKKVLKKSLEATTMLGTMFAVVVM ANTKEFVPFFFGKKYIPMTPLMFFFTLTIILIPMGGVFANQFALANKRDKDYAIPVTIGA VLELVFSYFLDRPFGAAGAMVAIILTEAVVLFLRCWIVRDGYDFKETFSDVPKCFLAMGI SLAAGMLWPWQIPSAFINMTVKSLVIMALYLAILWLLKFDLNEDLVTIVKKRLKK >gi|300496988|gb|AEAT01000061.1| GENE 3 2831 - 3565 1085 244 aa, chain + ## HITS:1 COG:BS_tagA KEGG:ns NR:ns ## COG: BS_tagA COG1922 # Protein_GI_number: 16080628 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Bacillus subtilis # 23 243 19 242 256 174 40.0 1e-43 MVKINILGVGFDKYSLAEFEARFLDRLRKKESTLVVTANPEIVMAAKEDPEYREIINNVA DYVTADGIGIIKGAKMLGLKLPERVTGYDLFCWYLQIANEDRLRVYLIGAKPAVIAAVKK KIAKEYPGIDLVGAEDGYSKDALPEIASRIAQSGPDLVFAALGFPKQEKLLAILRKQNLS ASMMGVGGSFDVFAGAVKRAPKLFQDAHLEWFYRLLKEPSRISRMMVLPKFVVEVKKSKK QDQQ >gi|300496988|gb|AEAT01000061.1| GENE 4 3565 - 4665 1083 366 aa, chain + ## HITS:1 COG:PAB0827 KEGG:ns NR:ns ## COG: PAB0827 COG0438 # Protein_GI_number: 14521452 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Pyrococcus abyssi # 13 321 18 325 371 99 30.0 9e-21 MKVLHINAGLESGGGLTHIVNLLSQAKKAGQDFDLLTFAEGPVAQAAREKGIKTIVLGGS SRYDLALLKRLKKTIKDGHYDLVHSHGARANLFVSLIKSSLLCPWLITVHSDPAIDFEGR GIAGKIFTKLNLRAIKQADGVFAITPRFEKILLNYGVKPGRIYVIYNGISFRDNRNIAGK EDHAGFNIINVGRLEKVKGQDLLLKAFKAANLPQAHLYIAGSGSQEADLKKLRQDLALTD QVTFTGFLTQAELRQLYRKMDLAVLSSYSESFPLVLLEAADNLLPLLATDVGGARELIPE GKGWVMPVNEEKAMADQLRAIAALPKEELAAIAQTEKAYARQHFSLDRQLADVLAGYQAC LQGEKA >gi|300496988|gb|AEAT01000061.1| GENE 5 4662 - 5363 1011 233 aa, chain + ## HITS:1 COG:FN1241 KEGG:ns NR:ns ## COG: FN1241 COG3774 # Protein_GI_number: 19704576 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannosyltransferase OCH1 and related enzymes # Organism: Fusobacterium nucleatum # 1 178 1 170 243 130 42.0 3e-30 MIPKIIHYVWVGGNPKSKTIQTCLASWQKRLPDYEIIEWNEDKLDLNANKYVKQAYQAKK WAFVSDYVRAKALYEMGGIYLDTDVMVLKDFAGLLNDRAFIGFENNDYLSAAIIAAEKGH PFMADILHYYDDLDFAFDQKDQLAGVNSLSVTEILKEKYGLKTGNQEQVLKEGIHVYPDG ILCNPSPQSRSIHLFTGTWLEGKNSWKHDLVTFLKLHIRSQKTAKIYYQLFRR >gi|300496988|gb|AEAT01000061.1| GENE 6 5468 - 6298 1290 276 aa, chain + ## HITS:1 COG:SP1420 KEGG:ns NR:ns ## COG: SP1420 COG0171 # Protein_GI_number: 15901273 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Streptococcus pneumoniae TIGR4 # 4 275 3 274 274 367 66.0 1e-101 MRELQKKIVEYEHVLPEIDPQEEIRKTVDFLKDYLKANPFLKSYVLGISGGQDSTLTGKL TQMAISEMREETGDDSYKFIAVRLPYGVQADAADAADAVAFIKPDVDLIENIKPATDAMV ATLKETGVEVTDFNKGNIKARQRMVMQYAIAGANQGAVVGTDHAAENVSGFYTKYGDGAA DLTPLFRLDKRQGKQLLAALGCPEHLYLKAPTADLEEEKPSLPDEVALGVTYEEIDDYLE GREVSEKAAERIEELWTKSEHKRHLPVTIFDDYYKK >gi|300496988|gb|AEAT01000061.1| GENE 7 6504 - 9170 3888 888 aa, chain + ## HITS:1 COG:SP1551 KEGG:ns NR:ns ## COG: SP1551 COG0474 # Protein_GI_number: 15901394 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 3 882 24 906 914 968 60.0 0 MAKKYYSQDIPGTLAEFGSDANHGISSAEAKKRLDQYGPNALAGKKKRSMFARFMDQFKD LMIIVLLVAAVLSGVVAQEWTDAGIILVVVLLNAVLGVIQEARSEAAIEALKDMSTPSAR VRRDGAVIEVPSTDIVPGDVVLLEAGDVVPADLRLLVAKSLKIEEAALTGESVPVEKSNE TLQGEDIALGDRINMAYSGTNVTYGRGEGVVVATGMNTEVGNIAKMLNEADETDTPLKQN LNQLGKTLTYMILAICVVVFIIGVIRNPHHEPMNALLIDMFLTAVSLAVAAIPEGLPAIV TIILALGTQTMADHKAIVRKLPAVETLGATDIIASDKTGTLTQNRMTVEKVYYDGILHDA SDDIDLTNQALITMLLANDTKIKDGGELLGDPTETALVQFGFHKDLPVKDFLAEHPRVQE VPFDSDRKLMSTVNRYDGQFMVAVKGAPDMLLERVKYVNINGELSEISAEQKKAILASNN EMAKQALRVLAMAYKVVAEPYADPTTDNVEQDLIFAGLVGMIDPERPEAKDAIAEAHRAG IRTIMITGDHQVTAQAIAERLGLVEKGRGDAVITGAQLDKLSDDYFTKHVGDYSVYARVS PEHKVRIVKAWQANGKIVAMTGDGVNDAPSLKQADIGVGMGITGTEVSKGAADMVLADDN FATIVEAVKQGRKVFANIQKAILYLMSCNVGEVLTVFLMTLLGWDVLKPVQLLWINLVTD TLPAIALGVEPIEKGIMNKKPRGKNSNFFSGGVASSIVYQGILEGALVLTAYGLGLHVLP QGTNPHEDALTMAFLTLGLIQLFHAINSKYLKQSIFQKSTFANKWFNGAIVLSALIMAAV ELPFLTRVFSVSELHLDQWLTVLGMGVLMIVIVEIVKFFERKADQRNN Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:21:10 2011 Seq name: gi|300496980|gb|AEAT01000062.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00010, whole genome shotgun sequence Length of sequence - 6985 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 5, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 18 - 77 1.8 1 1 Tu 1 . + CDS 132 - 473 280 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 482 - 527 6.9 - Term 469 - 515 7.1 2 2 Tu 1 . - CDS 532 - 1155 923 ## COG0406 Fructose-2,6-bisphosphatase - Prom 1202 - 1261 7.2 + Prom 1207 - 1266 6.6 3 3 Op 1 6/0.000 + CDS 1498 - 2580 1490 ## COG1932 Phosphoserine aminotransferase 4 3 Op 2 . + CDS 2599 - 3774 1691 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Term 3820 - 3862 10.2 + Prom 3844 - 3903 6.4 5 4 Tu 1 . + CDS 3970 - 4881 961 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Term 4892 - 4933 9.4 - Term 4880 - 4921 6.4 6 5 Op 1 . - CDS 4950 - 6020 912 ## LBUL_0937 hypothetical protein 7 5 Op 2 . - CDS 6076 - 6957 1556 ## COG1307 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|300496980|gb|AEAT01000062.1| GENE 1 132 - 473 280 113 aa, chain + ## HITS:1 COG:lin1187 KEGG:ns NR:ns ## COG: lin1187 COG0577 # Protein_GI_number: 16800256 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Listeria innocua # 4 113 1027 1136 1136 114 48.0 5e-26 MKKSNIIVEEIIRELSTIKVLGFFDQETTLYIYRETIILSIIGILCGYLAGLGLHTFIIT SLPPDNARFDPAMKISNFLYSALIPAVITALVALIMHKKIKSVNMLDALKSVD >gi|300496980|gb|AEAT01000062.1| GENE 2 532 - 1155 923 207 aa, chain - ## HITS:1 COG:CC1351 KEGG:ns NR:ns ## COG: CC1351 COG0406 # Protein_GI_number: 16125600 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Caulobacter vibrioides # 5 161 3 155 199 85 34.0 7e-17 MTTFYFIRHGQTFANKAGLKQGTINTPNTYLTDLGKEQAQKLADQFDISNFDRLFVSPLV RTKQTAEILNKKAGLPVETDDRLLEISYGDWDGQKNSELMAEYPNYFSPLVNDVTEDYVQ AAPKAECFAHVEMRTAEFVEEISQKYPEDQIVVVTHGFTVRSFAINATGGQGLQILEPDN CSVTKILVDPLSFKQHLVYYNRTVTAF >gi|300496980|gb|AEAT01000062.1| GENE 3 1498 - 2580 1490 360 aa, chain + ## HITS:1 COG:lin2957 KEGG:ns NR:ns ## COG: lin2957 COG1932 # Protein_GI_number: 16802016 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoserine aminotransferase # Organism: Listeria innocua # 4 356 5 352 363 367 51.0 1e-101 MTCYNFAAGPAMLPVEVIAQIKQDLPDYAHSGMSVMEISHRSALYKELYAETKANLLELM KLDQAEYDVLFLTGGATQQFTTIPLNLARKYHRIAVVDSGHWAQRAEEDAAKVPGLTVDI IASSKDNNYTAVPEIPTEFDQDYDYLHITTNNTIMGTAYRDDQIPKTDIPLVADMSSNFL GQEYDYSKFAVIYAGAQKNLAPAGLTVLVIRKDLLVKHDDLPGLFDFATEAKKKSALNTP PVFQVYVAGLALKWLKEKGGVAGIEAINQEKAKLLYDCLAESKNFESKVDPDSQSIMNVP FVSGDPDLDAEFVKEATAHQLLNLKGHRLVGGMRASIYNAMPLEGVQALCDFIKDFDAKH >gi|300496980|gb|AEAT01000062.1| GENE 4 2599 - 3774 1691 391 aa, chain + ## HITS:1 COG:lin2956 KEGG:ns NR:ns ## COG: lin2956 COG0111 # Protein_GI_number: 16802015 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Listeria innocua # 1 387 1 388 395 362 47.0 1e-100 MYQIKTYNAIAKEGLAEFGDNYRINQTDNPDAYLIRSVDLHDHEFPENLKAIARCGAGYN NVPLDKALENGTVVFNTPGGNANAVKELVLASMIIASRNIVAAANWSANAKPGADITLRT EKEKTSFNGTELLGKTVAVIGLGHIGSLVANACLDLGMKVVGYDPYLTVEAAWRLSDHIK RATSIADAVKDADFVTVHVPKNEETTGLIADAKIAQMKPNTILLNFARLGIVDNKAVVEA LAEHRLGKYYTDFSDATILHNDDIVITPHIGGSTIEAEINCARMAAKQTIEFLETGNIIN SVNLPNVSAPFESDHRITLIHKNIPNMIGQISTYLAGRGINIENLVNKAKEKYAYTMIDI DEIDQATQDEVVLNLEQIPAVTRVRILTHKK >gi|300496980|gb|AEAT01000062.1| GENE 5 3970 - 4881 961 303 aa, chain + ## HITS:1 COG:L124727 KEGG:ns NR:ns ## COG: L124727 COG0697 # Protein_GI_number: 15672884 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Lactococcus lactis # 11 290 25 305 310 140 32.0 2e-33 MKSNSKWAGLAAAACILWGISGLFAKGLFNLDPRITPIWVTQMRQVCSGLILLTVAQLTG KHPWQVWKDKKSAVQLLAYAVIGVLPFQYCFFLVVAQANAAIATVIQFIGPFFVLAYLTL TKQEALRPFDVAASLLAFGGVFLLSTHGNIHDLRIAPLTLLFGIMSAVGAAANSLLPQAL VTKQSTISVTGWGLLISGLILTAIHPVWPSLPSSPTVYLNLSVVIVMGTIIPTLWQNHAL GHISGMTVAFMDAFEPLASMIGSIIVFHFHPQMMDYAASMMIIFAVLALNWTPRSKIKAR VEK >gi|300496980|gb|AEAT01000062.1| GENE 6 4950 - 6020 912 356 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0937 NR:ns ## KEGG: LBUL_0937 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 356 1 356 356 602 97.0 1e-170 MRIKKRAVMALFCGIFLTGCSKQTASKEASNSSNKSSQSSKSSVKKTSKASSSSAKAVKL DAAKLTPQESGSLITLYCADRFGGEWSNLLQAGQNGSLTITLHKTSDYEFKQPGSGYAYE AAASGQTGTTYYTLSGSTFYFYQGVKVAGSGSSLGQATKQEMADYIVKKGQLAEFKQLAK KVEIVDKSGQTQRLSEGRSGYFTIPAEMQGTWYSASNYDGETTHSKYVFGQSTIFIQDDK YDTKGTTTTLYTRSNDFKMPLPPTEKQMDQVKGWGLGHLYQQDGLNYMNVMGWYQTAGSG TSFAVHTENIAGNNVQILVCASGARPWVDGIAYRSQAMAEKMQDQHFDDLHYRDDE >gi|300496980|gb|AEAT01000062.1| GENE 7 6076 - 6957 1556 293 aa, chain - ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 286 4 282 283 194 38.0 1e-49 MKIALVTDSTANLSAAEIEKYNIKVIPIPIYIDDKEYLEGINITSEELFESQRSGSSFPT TSQPKMGDLITTFDNFKDEGYEAIIYICLSSGISGSYSTLMGIAQNNPDYHLYPFDSQIT VRLQGYQVLAAAKMIEKDSYSPEEIIAKLAEIRSTVDELFIVDDLNNLCRGGRLSNASAF IGSLLNIKPLLTFNDEAKIVAYDKVRSMKRAVKKIEQESLEKIKSLDIPEDKLRILIIQS NDAAQADEVMNYLKAEVPKAVFEMDEFSPVIATYLGEKSIGITWMIDVEQMEF Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:21:19 2011 Seq name: gi|300496965|gb|AEAT01000063.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00155, whole genome shotgun sequence Length of sequence - 10810 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 8, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 32 - 1174 1747 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) - Prom 1296 - 1355 3.7 + Prom 1329 - 1388 4.4 2 2 Tu 1 . + CDS 1435 - 1956 924 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 2191 - 2228 3.1 + Prom 2098 - 2157 6.9 3 3 Op 1 1/0.000 + CDS 2354 - 3187 1017 ## COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase 4 3 Op 2 . + CDS 3259 - 3780 810 ## COG4720 Predicted membrane protein + Term 3783 - 3814 4.1 - Term 3771 - 3802 4.1 5 4 Tu 1 . - CDS 3807 - 6572 3368 ## COG1061 DNA or RNA helicases of superfamily II - Prom 6599 - 6658 5.1 + Prom 6626 - 6685 8.4 6 5 Tu 1 . + CDS 6721 - 7431 890 ## LDBND_0028 integral membrane protein + Term 7444 - 7474 3.0 + Prom 7441 - 7500 6.5 7 6 Op 1 . + CDS 7520 - 7999 841 ## Ldb0047 hypothetical protein + Prom 8003 - 8062 2.1 8 6 Op 2 1/0.000 + CDS 8090 - 8518 679 ## COG1959 Predicted transcriptional regulator + Term 8522 - 8552 3.0 + Prom 8535 - 8594 8.7 9 7 Op 1 . + CDS 8642 - 9001 483 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases 10 7 Op 2 . + CDS 8928 - 9341 219 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases 11 7 Op 3 . + CDS 9277 - 9477 115 ## LDBND_0033 nucleoside-diphosphate-sugar epimerase 12 7 Op 4 . + CDS 9556 - 9744 245 ## LDBND_0034 4-oxalocrotonate tautomerase + Term 9752 - 9786 4.3 13 8 Tu 1 . + CDS 10210 - 10782 713 ## LDBND_0035 hypothetical protein Predicted protein(s) >gi|300496965|gb|AEAT01000063.1| GENE 1 32 - 1174 1747 380 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 39 283 155 391 444 107 34.0 5e-23 MKFKHLKLLALISTLTAAVSMSFAGLAQASTTSASSRSYGVDVSSYQPTSTTKYSKAGAQ FVIVKVSEGTSYRNPNAKAQVASAKANKLLPMAYHFANFGSSSSRAKSEADYAIASAKAV SLPAGSYLACDWETSSGNSTSGSRSANTSAIMAFMKKVKAAGYQPLLYSGSYLLNNAINM STVTSTYPNSLWVAYYTSSGRIDAPDFSYFPSMNGVIIWQFTENWKGLNVDGNISVLPLS ISSSSSSSPSKTPASQAPVSKTKKKIMSKSYVYTSAGKRTGAYKSAYTYVYAIGGIVKIG SNNYYKIGTNQYIKVNNVDGTARKLVHNAWTYNSKGKRVKSVATLKKGKQVFTYGGKRKI GKKTYYRINVGRYIKAGNVK >gi|300496965|gb|AEAT01000063.1| GENE 2 1435 - 1956 924 173 aa, chain + ## HITS:1 COG:SP1464 KEGG:ns NR:ns ## COG: SP1464 COG0454 # Protein_GI_number: 15901314 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 1 155 1 150 164 110 37.0 1e-24 MQIRKAELKDFDQVMAILQDGRNQLAESGIDQWQGDYPNPDHVRQDIENGYAYLAKADDG ETVGTLTIIPAPDHAYDQLDGHWQIDTNDYVTIHRVAIHSDHTGHGYASQLYQAVINYFT SGFNDIKSVRVDTHEDNLPMQHLIEKSGFKRVGTLHGVYRENETSYVYELLTV >gi|300496965|gb|AEAT01000063.1| GENE 3 2354 - 3187 1017 277 aa, chain + ## HITS:1 COG:CAC1622 KEGG:ns NR:ns ## COG: CAC1622 COG2240 # Protein_GI_number: 15894900 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal/pyridoxine/pyridoxamine kinase # Organism: Clostridium acetobutylicum # 1 249 5 255 290 159 36.0 7e-39 MKSVLISQDLSCVGQVSLAVALPVLGASGLQTAALPTAILSTHTGGFGENTFLDLSASLP DIWAHWDKEKISFDAIYLGYLGQAASRVWEKGLEEYSRQGKLILLDPAMADHGRLYRGFD DSYVVQMQRLARQATILTPNLTEALLLLNEPVDFTEFDSHRACVITQRLAQRFALSQVVL TGVPLADNRIGVYGLSRGGRVWERTQDRIPHSYFGTGDLFASSLLAGLLHGLDLEQAAGV AGDFVAKAILATDLDQDQRFGPNYAAALPWLLQQLQN >gi|300496965|gb|AEAT01000063.1| GENE 4 3259 - 3780 810 173 aa, chain + ## HITS:1 COG:SPy1208 KEGG:ns NR:ns ## COG: SPy1208 COG4720 # Protein_GI_number: 15675172 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 4 168 14 176 185 80 34.0 2e-15 MTGLFAAMIYIGIWILRIPLPAVVGRPFIHFGNTLTAVAILYLGFRNGALAGIIGLGGFD ILNGYAATSWLTMLEVVVVAAILSAVYKGMKYNDSKKNIIILAVIAGVTKIFTSYATMVV AALMAGTALRPALVAAFLSLLATVINSCSTAVCTPILYFALKDITVRVMKRAH >gi|300496965|gb|AEAT01000063.1| GENE 5 3807 - 6572 3368 921 aa, chain - ## HITS:1 COG:Cgl1126_2 KEGG:ns NR:ns ## COG: Cgl1126_2 COG1061 # Protein_GI_number: 19552376 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Corynebacterium glutamicum # 186 921 30 784 789 489 37.0 1e-137 MELSPLSPPRLVSNQQENIWQTLRRQLLTCQSFTWAVAFITADMLPPFKLVMEDLQASGV RGTIITGTYLAFNQPRVFAELLKISNLTVRIVDGPFHAKGYLFDHGDWQTAVIGSANFTR SALLANQEWCLKVDSQTDSALPRQLAAALADLTGKSQPLTYTWLADYEKSWQPPAKPVLH VKQEKIVPNQMQAAALENLQALVKSGARRALVVSATGTGKTYLAALAVKDFVPRRFLYLV HREEIARKALETFKKVIDGKDSDFALLTGTSHQQARYTFATIQTVSQDQFLASQAADFYD YILIDEAHRSAAPSYQKVLSHFSPAFCLGLTATPERMDQQDIFALFDYNLAYEIRLADAL ESKMLTPFHYIGIRDYEIDGQTSDDFSDLRWLGAKKRVSYLLKELDYYGYSGPRPCGLVF CSRQEEARQLAEAFTQQGQPAQALTNQDSPAVRRQAVKDLESGRLHYLVTVDLFNEGVDI PALNQIVMLRATQSATVFIQQLGRGLRLYPGQDFVTVLDFIGNYQNNYLIPLALAGKKLS RDQLKYQLQTVSFAGLSTINFSRIASQEILASLDKVKLDSLKQLREAYADLAQQLGRAPL LLDFAKKGQVSPRLWLDNKSLPHYGAFLEKMGQPCQLSSYESQVLSFVTKELAPGQRPHE LLLLQALLPKGQISQTDFQALLKNYGAYDSPALEKSLEAILSLDFYDVKSGSTSQKAKYG GEPVACLKDGCWSLNPQIVQASPDFLRLFKDAVETGLFLAKEKDPAQDFTLYAAYDRKEV CRLLNWPLDVSRPMYGYRLSGNVCPVFITYQKTDQEQRNARYDNQARGQRLAWYTRTPRH LSSPEVQQLLRGTESGQQVTRIPVFVKRADAYGPKFYYLGSAKIDPATVREVNLKGKSAV GLDLVLPDPLPAKIADQLFSN >gi|300496965|gb|AEAT01000063.1| GENE 6 6721 - 7431 890 236 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0028 NR:ns ## KEGG: LDBND_0028 # Name: not_defined # Def: integral membrane protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 236 1 231 231 371 91.0 1e-101 MKAKKIRALARENLKQIPKKIYMPMGLLLVVANIIPNVFGQATDSKSGVGANIIFFLLEI AAALLTANGYIFFDRWRNKIQKGGEEPNAWCGLSGRHLARLAVYGVIEALIIVSVTLAIV AVIVGLVISQVPVAVSIILLTLLVVLLVWIELRLTYVVYVIDDDVRTGQKRSVWAEIGAG WKLTKGRVWKLLCLNLSFLGWDILTAFTLGILGIWLIPYYNLAIAETYEQSKEDKY >gi|300496965|gb|AEAT01000063.1| GENE 7 7520 - 7999 841 159 aa, chain + ## HITS:1 COG:no KEGG:Ldb0047 NR:ns ## KEGG: Ldb0047 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 159 1 159 159 295 98.0 3e-79 MAQALYISEIHMDLNEYTRMAMKVTEKSRRRIIMIAEAIWIAAGAVAFALKQYDFTVMFA LVIAFYPAALVYLYKRRLKKIYAGMPAIKDDYVRYEFYPDHFLVLTNRGDGEYRYDQITR YVETDEEIIMMPAPDQGMLLLKKNCSPDLIKFLREKCQR >gi|300496965|gb|AEAT01000063.1| GENE 8 8090 - 8518 679 142 aa, chain + ## HITS:1 COG:lin0458 KEGG:ns NR:ns ## COG: lin0458 COG1959 # Protein_GI_number: 16799534 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Listeria innocua # 1 135 1 136 155 110 44.0 9e-25 MKFSHKLSDAVHLLVYIEIFPDDDLSSRAIARSIVTNPSMVRSLMMDLRKAGLLKTKQGS AEPELAKKPEEISLYDIFAAVGMDHHLLHVDEDTEQKCPVGGNIQGPLAKAYAEVEEAAF AKMREISLREIVDQIKEDGQLA >gi|300496965|gb|AEAT01000063.1| GENE 9 8642 - 9001 483 119 aa, chain + ## HITS:1 COG:ECs5190 KEGG:ns NR:ns ## COG: ECs5190 COG0702 # Protein_GI_number: 15834443 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 4 118 3 115 286 98 52.0 3e-21 MKYAISAATGNFGQTAVKNLVDAVGEENVVAIVRNEEKGKQLLPAGIEIRQADYGDEAAV EKALAGVDKLLFISSQPGGAVTRADQHKNVVEAAKNAGVGYVAYTSFPKASESDNWLAS >gi|300496965|gb|AEAT01000063.1| GENE 10 8928 - 9341 219 137 aa, chain + ## HITS:1 COG:lin0459 KEGG:ns NR:ns ## COG: lin0459 COG0702 # Protein_GI_number: 16799535 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Listeria innocua # 18 118 110 213 281 81 42.0 5e-16 MPALATWLTPVSRKPVKATTGWQADHKLTEKLLKESGLKHSFLRNNWYLENEMTFLAPGP ANRLYWANNFAGWAPESEYAAAAVKVLTSDDPKEVYEFAGPKRSYQDLAAALNVATGEAA GQPGRICEGLGRPGLGS >gi|300496965|gb|AEAT01000063.1| GENE 11 9277 - 9477 115 66 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0033 NR:ns ## KEGG: LDBND_0033 # Name: not_defined # Def: nucleoside-diphosphate-sugar epimerase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 3 66 218 281 281 114 95.0 1e-24 MKQQVSQDEYVKALEGLGLDHDTAEMYAAFQQPIDDGSLTEESSDLEEVLGGLTPLDQAI KELLVK >gi|300496965|gb|AEAT01000063.1| GENE 12 9556 - 9744 245 62 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0034 NR:ns ## KEGG: LDBND_0034 # Name: not_defined # Def: 4-oxalocrotonate tautomerase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: Benzoate degradation [PATH:lde00362]; Dioxin degradation [PATH:lde00621]; Metabolic pathways [PATH:lde01100]; Microbial metabolism in diverse environments [PATH:lde01120] # 1 62 1 62 62 110 100.0 2e-23 MPFVHIELLAGRTPEQLEKMMKDVTRVISEDTGAPKEHISVIINELGKQQLAQGGEWREP QA >gi|300496965|gb|AEAT01000063.1| GENE 13 10210 - 10782 713 190 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0035 NR:ns ## KEGG: LDBND_0035 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 190 1 190 190 361 99.0 9e-99 MITSIKLLEANQILAQVLDSERGSEINVKKFCKLAACSRPTFYAHYGSMRQLSAELLLKK LDQHLYFATSDYGNGLKRLLTYMEKDRCFILNLLALIDAEKGKIKGKEFATRFPQKVEWL LRKKTVCYVDAHSLSGDYSIKTLNNAAHIIYAILYEWLAEGLQLSARDVYDRCQLAIEIV EEQTSKKALL Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:21:37 2011 Seq name: gi|300496952|gb|AEAT01000064.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00048, whole genome shotgun sequence Length of sequence - 8621 bp Number of predicted genes - 10, with homology - 9 Number of transcription units - 8, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 578 - 637 9.4 1 1 Tu 1 . + CDS 716 - 1141 691 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase + Term 1143 - 1203 5.2 - Term 1131 - 1189 12.4 2 2 Op 1 . - CDS 1194 - 1628 651 ## COG1101 ABC-type uncharacterized transport system, ATPase component 3 2 Op 2 . - CDS 1612 - 1770 203 ## LDBND_0057 transposase orf_a 4 3 Tu 1 . - CDS 1939 - 2292 383 ## LGAS_1655 hypothetical protein - Prom 2452 - 2511 6.8 - Term 2510 - 2563 2.5 5 4 Op 1 3/0.500 - CDS 2577 - 4229 2504 ## COG0366 Glycosidases 6 4 Op 2 . - CDS 4240 - 4947 772 ## COG2188 Transcriptional regulators - Prom 5056 - 5115 7.8 + Prom 5054 - 5113 6.8 7 5 Tu 1 . + CDS 5161 - 7026 2887 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 7043 - 7083 6.2 - Term 7030 - 7070 2.1 8 6 Tu 1 . - CDS 7084 - 7269 374 ## LDBND_1810 hypothetical protein - Prom 7294 - 7353 6.9 9 7 Tu 1 . - CDS 7387 - 7671 103 ## LDBND_1983 transposase 10 8 Tu 1 . + CDS 8203 - 8620 636 ## Predicted protein(s) >gi|300496952|gb|AEAT01000064.1| GENE 1 716 - 1141 691 141 aa, chain + ## HITS:1 COG:SPy1055 KEGG:ns NR:ns ## COG: SPy1055 COG0229 # Protein_GI_number: 15675047 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 1 141 1 143 145 200 65.0 9e-52 MNEKVDLKDRLTPMQYAVTQNAATEPPYTGEYDNFFEKGIYVDVVSGEALFSSLDKYDSG CGWPAFTKPLVKLTQRRDQSFGMERTEVRSRQADSHLGHVFTDGPLDKGGLRYCINSAAL KFIPYDQLEEAGYGEYRQLFE >gi|300496952|gb|AEAT01000064.1| GENE 2 1194 - 1628 651 144 aa, chain - ## HITS:1 COG:PA3838 KEGG:ns NR:ns ## COG: PA3838 COG1101 # Protein_GI_number: 15599033 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Pseudomonas aeruginosa # 7 144 127 264 264 147 57.0 7e-36 MRFCAEYKEKLKVLNLGLEDRLTAKVGLLSGGQRQALTLLMATLVKPKVLLLDEHTAALD PKTAEKVLKATDRIVADGKLTTIMVTHNMRDAIAHSNRLIMMNDGKVVLDIKGEEKKKLT VEKLLHQFEVVSGEEFASDKAILG >gi|300496952|gb|AEAT01000064.1| GENE 3 1612 - 1770 203 52 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0057 NR:ns ## KEGG: LDBND_0057 # Name: not_defined # Def: transposase orf_a # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 52 1 52 219 97 96.0 2e-19 MSEYMSISKAAEYLNVAKSTLRNWEAEGLITPLRTASNQRRYTKEVLDEVLR >gi|300496952|gb|AEAT01000064.1| GENE 4 1939 - 2292 383 117 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1655 NR:ns ## KEGG: LGAS_1655 # Name: not_defined # Def: hypothetical protein # Organism: L.gasseri # Pathway: not_defined # 4 103 9 109 1425 64 41.0 1e-09 MMIMSHKHDPNFNSKLNGKEKFGFRKLSIGLVAVALDTSFFVSNGQLVHAADDTATETVV QQGNASDSSSVDTSSSTTVEESTSSESTTETAPAEKTNSESTTEGTAPLLMSKSKPL >gi|300496952|gb|AEAT01000064.1| GENE 5 2577 - 4229 2504 550 aa, chain - ## HITS:1 COG:SPy2096 KEGG:ns NR:ns ## COG: SPy2096 COG0366 # Protein_GI_number: 15675852 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pyogenes M1 GAS # 6 547 6 537 542 626 56.0 1e-179 MQNLGQKVIYQIYPKSFYDANGDGIGDLRGIIEKIDYIKKLNVDMIWFNPFYVSPQNDNG YDIANYREIDPLFGTMADFEELQAKLADIGVGVMLDMVLNHCSTEHEWFKKALAGDEKYR KFFYLRPGKPDGSLPNNWQSKFGGPAWSKFGDTDLYYLHLYDPTQADLDWHNPEVRKELE DVVNFWRGKGVRGFRFDVINVTGKSEDLVDSTDPTEEKTLYTDTPVVHDYLKELNRTTFG QDEDSITVGEMSSTTIPNSVRYTNPKEKELSMVFTFHHLKVDYKDGEKWTKTPFDFMKLK GLLSSWQTGMTEGGGWNAVFWNNHDQPWALSRFGDPVHYREKSAEMLAATIHFLRGTPFI YQGEELGMVNPDYQSMDEYVDVECKNAYQELLDKGMSEDEAFAIIKAKSRDNSRVPMHWD DSKYAGFSQVKPWLLPTHQDEINVKKELAEGEIFAFYQKLIALRKQEAVISAGGFREILP DDQQVFAYVRELDGEKLVVFNNFYGKEAVISVPSDLQECGQILLDNYKRELSCLPGELSL RPYESLAFRI >gi|300496952|gb|AEAT01000064.1| GENE 6 4240 - 4947 772 235 aa, chain - ## HITS:1 COG:BS_treR KEGG:ns NR:ns ## COG: BS_treR COG2188 # Protein_GI_number: 16077849 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 8 234 9 238 238 169 41.0 3e-42 MTAKQDMITQDLAGKIRHGIYPPKSFLPSENELANLYGASRNTVRKSLEDLTSLGLIQKI KGKGSIVLDFSRLSFPISRITTFNELNQSLGLKAETKLLEIKEVKKVPDDFSCDNTEPFI KVKRLRIIDGEPDVLDVDYISTKYVKEISPSVAEHSLYDYFENELGLKISYAVKDVSVQT VSEELAKMLELDPDRKAVLVKSMVYLEDTSLFQLTASYHNPNRFRFIDFARRSKI >gi|300496952|gb|AEAT01000064.1| GENE 7 5161 - 7026 2887 621 aa, chain + ## HITS:1 COG:L37906_2 KEGG:ns NR:ns ## COG: L37906_2 COG1263 # Protein_GI_number: 15672409 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Lactococcus lactis # 111 475 3 398 406 249 39.0 1e-65 MAKKDYSGLAKTIIANVGGKENINSLIHCITRLRFYLKDESKANDEVLKETDGVIDVMHA SGQYQVVIGNAVTQVYDAVMAELGGLPEGGEAAETKEDDGKNPVSKAFGNLIGFITGSMS PVVGVIAASGIIKGILALLTLPQLGALLNVKSTAYITVSAMADSAFYFLPILVGFAAAKK LNGDPIVAAVIGGVLTYPQLVTWGGQYKTMFSLGGFNFQFLNYTYSIFPMILAAWLAKKL EDWLRDHLPDYLQMIFTPMITILLVSAVTLMITGPVIQGVANGIADLINWVVSASGWIGG LLIGAFYQVLVIFGLHWGVVPLVAQQIAQSGQSSLNAIISVTMVSQGAAVLAVALKTKKK GTKTLGISAAVSAFCGVTEPAIYGINLRFKRVFISGLIGSAVGGLITGLMHGTMYGFTGS LIGFSSFFNPKNPSDLTSFYAFLLSSAAALVISFIVAWVWGYNDEMVAGKKVEKKQRPGS EAKQKSETLIAPVAGKVIALSSVNDPVFSTGAMGEGFAVVPTEGVVKAPVDGEVAALFET GHAIGLKTTAGAEVLIHIGIDTVMLKGKGFNVKVAQGDLVKAGQTLIEFDLDGIKEAGYD PTVMTVVTDKHDVDIKLPSVE >gi|300496952|gb|AEAT01000064.1| GENE 8 7084 - 7269 374 61 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1810 NR:ns ## KEGG: LDBND_1810 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 61 1 61 61 100 100.0 2e-20 MQFTKQFEGTFAQVKEQIDKFVAEGGHIDAVITDHTGEKVTEDHTFGYKMRVIAICSEEE S >gi|300496952|gb|AEAT01000064.1| GENE 9 7387 - 7671 103 94 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1983 NR:ns ## KEGG: LDBND_1983 # Name: not_defined # Def: transposase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 76 374 449 455 152 94.0 5e-36 MCVRLEEIIDICKATENSHFIWFARLLYRHLRGIYTFAKYGISTGKLEGINNKIKTERRK GYEYPDDECFSLRLMESYHGRLPKSLNHLHKFLY >gi|300496952|gb|AEAT01000064.1| GENE 10 8203 - 8620 636 139 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKNNRLMKNLGKATVAAALLATGVSPVLAATENKTEVKSNKTAAESSSKKTSSPESSKAS SSSEASKSSSSAASSSSKKAAKKSAKKSTKKAAKKSTKKAAKNTKKVAKKTTKKAAKATK KSTKKAAKDTKKAAKTTKK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:22:11 2011 Seq name: gi|300496906|gb|AEAT01000065.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00198, whole genome shotgun sequence Length of sequence - 57285 bp Number of predicted genes - 45, with homology - 45 Number of transcription units - 20, operones - 13 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 58/0.000 - CDS 63 - 3728 5134 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit 2 1 Op 2 . - CDS 3744 - 7430 4681 ## COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit - Prom 7468 - 7527 8.4 - Term 7497 - 7535 6.4 3 2 Op 1 . - CDS 7632 - 7976 628 ## Ldb0385 hypothetical protein 4 2 Op 2 . - CDS 8001 - 10460 1978 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 5 2 Op 3 . - CDS 10484 - 10960 343 ## PROTEIN SUPPORTED gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 - Prom 11048 - 11107 5.7 - TRNA 11101 - 11175 79.8 # Gly GCC 0 0 - TRNA 11284 - 11357 76.4 # Pro CGG 0 0 - TRNA 11362 - 11433 79.2 # Gly GCC 0 0 + Prom 11445 - 11504 6.2 6 3 Tu 1 . + CDS 11569 - 12177 950 ## LDBND_0326 hypothetical protein + Term 12180 - 12231 11.9 - Term 12162 - 12218 6.2 7 4 Tu 1 . - CDS 12252 - 13544 2216 ## COG2873 O-acetylhomoserine sulfhydrylase - Term 14003 - 14043 8.2 8 5 Op 1 . - CDS 14158 - 14670 581 ## COG2199 FOG: GGDEF domain - Prom 14724 - 14783 2.4 - Term 14731 - 14773 3.1 9 5 Op 2 . - CDS 14785 - 15219 264 ## LDBND_0322 hypothetical protein - Prom 15254 - 15313 4.3 - Term 15287 - 15321 3.2 10 6 Op 1 3/0.000 - CDS 15341 - 16798 2254 ## COG1190 Lysyl-tRNA synthetase (class II) 11 6 Op 2 . - CDS 16881 - 17909 498 ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase - Prom 17938 - 17997 5.5 - Term 17980 - 18019 6.2 12 7 Op 1 . - CDS 18029 - 19315 1554 ## COG2195 Di- and tripeptidases 13 7 Op 2 . - CDS 19325 - 20950 2879 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 20994 - 21053 3.6 14 8 Op 1 1/0.000 - CDS 21435 - 22316 1276 ## COG1281 Disulfide bond chaperones of the HSP33 family - Term 22323 - 22354 3.4 15 8 Op 2 14/0.000 - CDS 22361 - 24574 1188 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 16 8 Op 3 . - CDS 24645 - 25940 1294 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control - Term 25954 - 25982 2.1 17 8 Op 4 . - CDS 25986 - 26342 359 ## PROTEIN SUPPORTED gi|58336615|ref|YP_193200.1| putative ribosomal protein S1 18 8 Op 5 . - CDS 26339 - 26719 674 ## Ldb0365 hypothetical protein 19 8 Op 6 3/0.000 - CDS 26785 - 27027 364 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 20 8 Op 7 7/0.000 - CDS 27095 - 30571 5060 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 21 8 Op 8 . - CDS 30588 - 31145 932 ## COG0193 Peptidyl-tRNA hydrolase - Prom 31255 - 31314 4.9 + Prom 31204 - 31263 9.7 22 9 Tu 1 . + CDS 31315 - 32013 1267 ## COG0517 FOG: CBS domain + Term 32033 - 32067 3.2 - Term 32020 - 32054 3.2 23 10 Op 1 5/0.000 - CDS 32068 - 33198 1584 ## COG0787 Alanine racemase 24 10 Op 2 . - CDS 33195 - 33608 365 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) - Term 33633 - 33680 6.0 25 11 Op 1 2/0.000 - CDS 33693 - 35138 2028 ## COG0513 Superfamily II DNA and RNA helicases 26 11 Op 2 . - CDS 35148 - 36515 2034 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase - Prom 36543 - 36602 6.9 - Term 36573 - 36602 1.2 27 12 Op 1 . - CDS 36623 - 36874 433 ## PROTEIN SUPPORTED gi|104773510|ref|YP_618490.1| 50S ribosomal protein L31 type B - Prom 36894 - 36953 2.5 28 12 Op 2 . - CDS 36974 - 38245 1741 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase - Prom 38271 - 38330 7.0 - Term 38299 - 38340 9.0 29 13 Op 1 5/0.000 - CDS 38366 - 39985 2449 ## COG0504 CTP synthase (UTP-ammonia lyase) - Term 40028 - 40060 -1.0 30 13 Op 2 . - CDS 40102 - 40626 603 ## COG3343 DNA-directed RNA polymerase, delta subunit 31 13 Op 3 . - CDS 40717 - 41115 462 ## LDBND_0300 hypothetical protein - Prom 41194 - 41253 4.7 + Prom 41158 - 41217 3.9 32 14 Tu 1 . + CDS 41239 - 42567 1778 ## COG1078 HD superfamily phosphohydrolases + Term 42595 - 42635 8.1 - Term 42583 - 42621 3.1 33 15 Tu 1 . - CDS 42639 - 43643 1405 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 43729 - 43788 5.4 - Term 43802 - 43844 6.5 34 16 Tu 1 . - CDS 43849 - 44652 1493 ## LBUL_0304 hypothetical protein - Prom 44758 - 44817 6.4 - Term 44782 - 44817 4.4 35 17 Op 1 . - CDS 44822 - 46207 2305 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) - Term 46220 - 46257 6.0 36 17 Op 2 . - CDS 46269 - 47099 1148 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 47131 - 47190 5.7 - Term 47152 - 47190 5.3 37 18 Op 1 2/0.000 - CDS 47206 - 47457 227 ## COG4466 Uncharacterized protein conserved in bacteria 38 18 Op 2 7/0.000 - CDS 47517 - 48407 1332 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 39 18 Op 3 3/0.000 - CDS 48382 - 48954 711 ## COG1658 Small primase-like proteins (Toprim domain) 40 18 Op 4 8/0.000 - CDS 48938 - 49717 919 ## COG0084 Mg-dependent DNase 41 18 Op 5 . - CDS 49717 - 51699 3199 ## COG0143 Methionyl-tRNA synthetase - Prom 51727 - 51786 5.8 - Term 51788 - 51826 6.2 42 19 Tu 1 . - CDS 51835 - 54525 3741 ## COG0474 Cation transport ATPase - Term 54799 - 54832 0.0 43 20 Op 1 . - CDS 54883 - 55548 760 ## Ldb0340 hypothetical protein 44 20 Op 2 . - CDS 55478 - 55924 594 ## COG2131 Deoxycytidylate deaminase 45 20 Op 3 . - CDS 55962 - 56987 1703 ## COG0180 Tryptophanyl-tRNA synthetase - Prom 57186 - 57245 74.0 + TRNA 57169 - 57239 62.5 # Gly CCC 0 0 Predicted protein(s) >gi|300496906|gb|AEAT01000065.1| GENE 1 63 - 3728 5134 1221 aa, chain - ## HITS:1 COG:SPy0099 KEGG:ns NR:ns ## COG: SPy0099 COG0086 # Protein_GI_number: 15674322 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Streptococcus pyogenes M1 GAS # 1 1193 1 1190 1213 1658 67.0 0 MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDYAC ACGKYKGVRYKGIVCDRCGVEVTTSHVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDV SPKQLEEVIYFAAYIVIDPGDTGLEAKQLLTEAEYREEKAKYGNRFVAKMGAEAIRDLLK QVDLDKEVTALKAELQTLKGQKRTRAIRRLDILDAFRNSGNKPEWMVMETVPVIPPDLRP MVQLEGGRFATSDLNDLYRRVINRNNRLKKLLDMHAPGLIVQNEERMLQEAVDALIDNGR RGRPVVGPGNRPLKSISHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKLYQCGVPRP MALELFKPFVMRELVRRGIASNIKNAKRKIDREDDDIWDVLEYVIKERPVLLNRAPTLHR LSIQAFEPVLVPGKALRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHIL TPKDGTPIVTPSQDIVLGNYWLTQAEIGREGEGMIFATPEEATIAYNNGDIHYHTIIGVS AASMPKKDWGAGHEDSIFVTTYGRLVFNSLFPDDYFYINEPTQDNLKQPMADKYFLEDGQ DIQDKIAEIGQDLVATPFKKGFLGDTISEIYKRYRVQRTSEYLDDLKEMGYSASTISGLT IGMADVPETKTKDALVAEARKQVKQVSKMFRRGKLSDKERHDNVIKIWTDCKDAVQQEIA EFKDQKNPISVMQQSGARGNISNFTQLAGMRGLMATPSGELFEIPVISNFKEGLTVLELF MSTHGARKGMTDTALKTAQSGYLTRRLVDVAQDVIIREDDCGTDRGITAKAIVDKDAGLI ESLYDRLVGRFTNRTIRDPQTGEVICPKGVLMDEQMAQKIVDAGVQEVQIRSILTCNTSH GICRKCYGRNLATAEEVEIGEAVGTVAAQSIGEPGTQLTLRTFHTGGVAGAEDITQGLPR VQELFEARNPKGRAVISEVDGVVDKIESNAAEHLQEITVKGKIDTRVYTIPYTAKPAVQE GDEIHRGDKLIPGSIDPKELIKVTDTLTTEEYILAEVQKSYRTQGVDLADKHAEVLTRQM LQKVRVLDPGETDILPGEVMDIAEFRDRNRDVIISGGIPATAQADILGITKAALETNSFL SAASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGMPIYRDQVPKADVQQPDS VYSIADLEKKMEDENKETESK >gi|300496906|gb|AEAT01000065.1| GENE 2 3744 - 7430 4681 1228 aa, chain - ## HITS:1 COG:SPy0098 KEGG:ns NR:ns ## COG: SPy0098 COG0085 # Protein_GI_number: 15674321 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta subunit/140 kD subunit # Organism: Streptococcus pyogenes M1 GAS # 5 1189 1 1187 1188 1654 68.0 0 MFSLLNGHVVNYGQHRTRRSFSRIKEILPLPNLTDVQTESYKWFLDEGVKEVFDDILPIS DASGRLTLEYVDYKLQEPKYTVDESRKHDATYSAPMHVTLKLTNHETGEIKTQDVFFGDL PLMTKSGSFIVNGAERVIVSQLVRSPGVYYSGEFDKNGRQIFGTTVIPNRGAWLEFETDA KNISYVRVDRTRKLPLSVLVRALGFGSDSEIKEIFGDSDTLDLTLDKDVHKNPADSRVAE ALKDIYDRLRPGEPKTTDSSRSLLVSRFFDPRRYDLAAVGRYKVNKKLSLKNRLLGYTLA ETLADPDTGEVLAAKGTVVNNEVMDVLKDYLDRDDFKTVTYTPSDEGAIPEPVTVQEIKV FSREIPDREIKLISNGHIAEDVKCITPADIIASVNYFLELQEGVGNIDDIDHLGNRRIRR VGELLQNQMRIGLARMERVVRERMSIQDAATVTPQQLINIRPIVGSIKEFFGSSQLSQFM DQNNPLGELTHKRRMSALGPGGLSRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSM ATYAIINKYGFLETPYRRVSWATHKVTDKIDYLTADEEDNYIIAGANTPLNEDGSFVDDV ILCRHREDNVEVSPDRIDYIDVIPKQVVSVTSACIPFLENDDSNRALMGANHQRQAVPLI NPHGPLVATGMEYRAGHDSGDALLAEADGEVEYVDANEIRVRREDQTLDTYTLEKYRRSN ATKNYNQTPNVKRGDKVVDGQVIANGPSMADGELALGQNPVIAFTTWNMYNFEDAIMLSE RLVKEDVYTSIHIEDYDSEARDTKLGPEEITREIPNVGEDALKDLDESGIIRIGAEVHDG DILVGKVTPKGITELSAEERLLHAIFGEKAREVRDTSLKVPHGGGGVVQDVQVFTREAGD ELAPGVNTLVRVYIVQKRKIQVGDKMSGRHGNKGTVALVAPVEDMPYLPDGTPVDICLNP MGVPSRMNIGQLLEIHLGRAARALGIHVATPVFDGASEDDVWDFVREAGVDSDGKTVLYD GRTGEPFHNRVSVGVMYYLKLTHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEME VWALEAYGAAYTLQEILTYKSDDVVGRVKAYEAIVKGERITKPGVPESFRVLVKELQSLG LDLRVLDSDENEVELRDMDEDSNEHVNIDALSRLAEAQEKKKLAEEEAEIAAEAEAEGSA EEDAAEADADANADANEAETADDDKASK >gi|300496906|gb|AEAT01000065.1| GENE 3 7632 - 7976 628 114 aa, chain - ## HITS:1 COG:no KEGG:Ldb0385 NR:ns ## KEGG: Ldb0385 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 63 114 1 52 52 99 98.0 4e-20 MFGKKKKAEAAKAEQEASKKTDGRILLYSDIIDALYDEMPREEREALLEAKQQLEEKVYL GKVMRDLRIALEPVAIKSQLSPQGKQIFWNITAGGYQLTGVGLASQAAMLFSGR >gi|300496906|gb|AEAT01000065.1| GENE 4 8001 - 10460 1978 819 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 803 2 806 815 766 48 0.0 MQNSYSKSSRQVLEIAQEQAKEFHHRLVGTEHVLLALVIEADGKAGKILRTMNVTPTGVR EEIERYTDYGSAAPTSYMEFSPRLTLALDYAKRNSELRSSKEIETTDILQALVSSEQILS AMILRNLDVDLENLKDELDDANQVTGESSQTSRPAAAGSSQSQTPILDRFGIDLNRRAKE GNIDPVIGRQRELDRVIQILSRRTKNNPLLVGEPGVGKTAVAEALASAIVAKKVPRDLAD KRVVSLDVNSMVAGTRYRGEFEERMDRLIKEVTASKNVILFVDEIHSLVKAGDAEGAMSA SNTLKPALARGDIQLIGATTFEEYRKHMEKDSAFVRRFQLVRLAEPNEEETLQILHGIKD KYEDYHRVALSEEALQAAVDLSSHYIADRYQPDKAIDLIDEASAAVKLANDTGEDKDLAE IDLEISRTLKQKNDEAAKQNFAQAAKLRNQEIALRQKRNEIAKKLAGKDEKRSVVGAEDV AKVVSIWTGVPVTQLKTSENKRLARLEGILHERVIGQDDAVKAVANAIRRSRSGLKDENR PIGSFLFLGPTGVGKTELAKAVAEAVFGSEDNIIRVDMSEYMDRESSSKLIGSAPGYVGY EEGGQLSNKVREHPYSVVLFDEVEKANPEIFNVLLRVLDEGFMTDSLGRKVDFRNTIIIM TSNLGSRSLEAGSHVGFSASQEDQGKLIAEKVTRATKDFFRPEFLNRIDEKIVFKPLEAK QLREIVTLLTRKLVKRLAEKDITLRLSPAALDQLAKDGYNPEMGARPLRRTIQDEVEDEL AQDLVSEKLQAGDTVKIGARGGKLRFEIVKAKTGEKIKG >gi|300496906|gb|AEAT01000065.1| GENE 5 10484 - 10960 343 158 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 [Streptococcus pneumoniae R6] # 5 156 1 151 165 136 44 2e-31 MKEEIMAAASQAEYELLLEQAKALTAGESDWIANTGNVSALLKAGMKNVNFAGVYRFEKG ELILGPFQGMPACVHIQLGKGVCGKAALEKKTQIVANVHDFPGHIACDSASNSEIVVPVF NRDGSLWGVYDFDSTNLDNFDDLDQKYLEQIAAVALGN >gi|300496906|gb|AEAT01000065.1| GENE 6 11569 - 12177 950 202 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0326 NR:ns ## KEGG: LDBND_0326 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 202 7 208 208 350 99.0 2e-95 MKKKRLLAACLALALLPLLYSCSMISDYTLDLKSKLVGIPFTVSTYDYDGQKIDQIKGKS VHIETYKPMSKKNSSGDEQSKVIDVEFGGQQMIHVGSSLIANEGLRNYEDTFSKKVTITD KQRSIPVLSIMYNNFRNDWLSKGKVIMIRSQAGKPIAVYAGNKVRVSTTDMPSTTQINVD GHRLFIYRCDYSIYDMETIKKM >gi|300496906|gb|AEAT01000065.1| GENE 7 12252 - 13544 2216 430 aa, chain - ## HITS:1 COG:CAC2783 KEGG:ns NR:ns ## COG: CAC2783 COG2873 # Protein_GI_number: 15896038 # Func_class: E Amino acid transport and metabolism # Function: O-acetylhomoserine sulfhydrylase # Organism: Clostridium acetobutylicum # 11 429 7 426 427 509 63.0 1e-144 MSKEAISNEGLSFETLQVHAGQPIGETGARAVPIYQTTSYVFDDADQAAGRFALTDAGNI YSRLTNPTTAVFESRVAALEGGTGGVSLATGAAAITAAILNVAGAGDEIVAASTIYGGTY DLFAQTLPPLGIKTHFVDPSDPANFEKEINDHTKVVYAETIGNPNANLIDIDAVAAVAHK HGVLVIIDNTFATPYLYRPFEHGADVVVHSATKFFGGHGTTMGGVVVESGKFDYEKSGRY PTFTNPDPSYKDVTWAKLGAGAFTTKIRATVLRDTGASLSPFNAFLLLQGLESLSLRVER HVYNAQRVAEYLSKHPKVAWVRYSGLADSPDHALAERDFPKGVGSIFTFGLKGGEEAGKQ LIDNLKLFSLLANVADAKSLIIQPASTTHAQLNDEELDSVGITPDLIRISVGVENIDDLL ADLDQALAKL >gi|300496906|gb|AEAT01000065.1| GENE 8 14158 - 14670 581 170 aa, chain - ## HITS:1 COG:VC2224_2 KEGG:ns NR:ns ## COG: VC2224_2 COG2199 # Protein_GI_number: 15642222 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Vibrio cholerae # 3 166 42 184 186 74 31.0 7e-14 MLRSTFMDLLQKAIEQPECTDLFIGLVDIDYFKQINDNYGHRMGDLAIQRLSQCLEKGLE VDYRDRADFVEKFDPAKDNVLARLGGDEFVFACHCPSEAACLEKMRGLQAAFAKEEIALD GQRLSQLRFSCGVIHYLNNLSNVDQLYQKADQLMYEVKKQGGGNVLLARS >gi|300496906|gb|AEAT01000065.1| GENE 9 14785 - 15219 264 144 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0322 NR:ns ## KEGG: LDBND_0322 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 144 1 144 144 192 100.0 4e-48 MRAAIRKGEFLPIYKYLLSILTTISALAGAFLAASSGLPAYLAGQPLKAGIFAVLCLLEG LSAYLLWRPGKRALAVLNGGLLAAALLLFWQGEGLAAGSALALLAINYLLKREETWAWTL ALVLNLVFAALTMLPHQFMSFPAA >gi|300496906|gb|AEAT01000065.1| GENE 10 15341 - 16798 2254 485 aa, chain - ## HITS:1 COG:SP0713 KEGG:ns NR:ns ## COG: SP0713 COG1190 # Protein_GI_number: 15900610 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Streptococcus pneumoniae TIGR4 # 2 470 22 491 491 656 68.0 0 MGIEPFGRKYDREALARDLDEKYLGLDKDELNANMPKTKIAGRMLAKRGKGKVGFADLYD RSGKIQIYVRKDMVGEENYQIFKKADLGDFLGVEGEVFKTDSGELSVRAQHVTFLSKALR PLPDKYHGLKDVESIYRQRYLDLITNHESYQRFVNRTKIIQAIRDYLNGQDFLEVETPVL HNIPGGAEARPFITHHNALDINLYMRIALELPLKRLIVGDMERVYEIGRVFRNEGMDLKH NPEFTELETYAAYYDFHDVMDEAEGIIRAAAKVVSEDGKINYQGTDLDLGKPFRRVHMVD LIKELTGVDFWQPMTLEEARKVAAEHHVEVEPYWQVGHIINAFFEEFGEKTIVDPTFVYG HPVEVSPLAKKNADDPRFTDRFEIFIMGNEYGNAFSELNDPLDQRERFEAQMAERDAGND EADIIDEDYLRAMEYGMPPTGGLGIGIDRLVMLLTNAASIRDVLLFPTMRPDKIVDGEKN INLDK >gi|300496906|gb|AEAT01000065.1| GENE 11 16881 - 17909 498 342 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 6 324 29 346 353 196 33 3e-49 MDTTWKIREIEIPNRVMVAPMAGVSNMAFRKVCKEFGAGMVVCEMISDHGIIYGNEKTLS MLDVDPGEHPMSIQIFGGTEDSLLQAAQYIDQHTDADIIDINMGCPVPKVTKTDAGSKWL LDSNKIYQMVHKVVQNVEKPVSVKMRIGWDRKHIFAVENALAAQEAGASMLAMHGRTRKQ MYQGEADWETLHEVAQVMDIPFVANGDITTPQLAKKALDEIGCTAVMVGRAALGNPWILK EMTHYLATGEELPKQSVREKVETAKHQLDGLVQLHGEKRAVPEFRQQAAYYLKGIPRSAR TRAKINEVWTRQEVFDLLDEFVEIYEKRARQKQDRVADTQSM >gi|300496906|gb|AEAT01000065.1| GENE 12 18029 - 19315 1554 428 aa, chain - ## HITS:1 COG:FN0733 KEGG:ns NR:ns ## COG: FN0733 COG2195 # Protein_GI_number: 19704068 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 1 414 1 412 412 339 42.0 5e-93 MAFSDFDFLEKNFIHYAKEDTQSKYANKDQVPTTPNQVKMMKELADQVKDYGLESYYNEK TAFAIGHLAANTAGVAPIGFFAHVDTVEFDDRFPIRPQVHRDYQGQKLALDEANGIFLDP EEFPDLLTLKGQTLITSDGKTVLGTDDKAGVAGLLAALKYLHEHPEVEHGDIYVAFGPDE EIGLGGQRFDPADFPGVEFAYTLDNGRPGDFEYETFNASAADLTIKGTVVHPGEAYGLLV NATTIMTEFLAALPQDQVPEKSRGHEGFIMVTDAQSSVDSAHVGLIIRDFDWDEFLAKED LVKKLVASLGEKYGPDRFQLDLRRQYENIYNGVKDRPYVVNLALDSYEKAGLAPNVQTFR GGTDGNFITKKGIPTPNLFNGGGNYHGRYEYVTVEQMDKLAEVLVTIAAEHARQSKEGQD KRPLEKYW >gi|300496906|gb|AEAT01000065.1| GENE 13 19325 - 20950 2879 541 aa, chain - ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 11 540 11 549 549 335 37.0 1e-91 MTLKKITAAGLLTASALVLAACGQQKSSQSQTKQVLNWTESAQISTQDPSLTTDSTSFQA LLNTQEGLYRLDKKQKPQLALAKSAKVTDGGKTYTFVLRDAKWSNGQAITANDFVYSYRR SLNPKTKSSMAFYFYQIVNAEAINAGKKPVSSLGVKALSKNKLQIKLVRPVSYFKLLLAF PLFFPENQQFIEKVGSKYGTAAKYTISSGPFKLTKWTGSNKQFTLVKNQNYWDKKNVKLD KVNETISETSSTAYNLYQAGKLDETYLTGEQVKANKGKSTFYDRPASAIQRLELNRKKVK AFNNFNIRRALSLAIDRESLAKVLSDGSVAAKGFVPSGMGNNPTTGEAFYKEAYVKEAVS YNLKEAKKYLAKGYKELGIKSLNLNLTVSDTDSAKQVGEFLQSKLGELPGVKITVTTLPY TTLISRQSAGNYQLTIKNWQAILGDPINFLDVFEKDSSYNTGGFASSKYDQLLNEAENVY GNKPVQRWKRLVAAEKLLMNEQGTIPLIQTAKPQLVQSYVKNVSYNPLGIPYDFKLVYIK K >gi|300496906|gb|AEAT01000065.1| GENE 14 21435 - 22316 1276 293 aa, chain - ## HITS:1 COG:lin0254 KEGG:ns NR:ns ## COG: lin0254 COG1281 # Protein_GI_number: 16799331 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Listeria innocua # 1 279 1 282 294 261 47.0 2e-69 MNDYLIKAINASKDLRLLTINGKDLVAEAQKRHDTWSASSAVLGRSLLGTLLLARAELKG DQELTLRLLGDGPVGAAVVTAKSDLTVKGYVQNNHVALPAREDGHIDVKKAVGKGWLQVT KDLGLKQPYTGEVPIVSGEIAEDLTYYLAKSEQIPSAVGLSVFVNPNDTIGAAGGFLLQA LPGASEELLQETEDRIKALPQLSSAFLDGMTPEDLAKKILGDDCKILEKDEVSYHCDCSK EKYAGMLETLKGSQLKEMIDEDHGAELVCNFCGNKYNFTEAELQAILDRKLEK >gi|300496906|gb|AEAT01000065.1| GENE 15 22361 - 24574 1188 737 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 13 664 14 635 636 462 40 1e-129 MKNNRNRLFSNGLFYIVVFLLLLWGINWALGGSSNSGATETISYSEFVKKLRNGEIRDFN VQPSNGVYSVTGSYKSSQTKSSSSSDIFGGNTSSKVTGFSTTMLGNDSSVKKVQDLAQSE NVKMSTQGESQSSNWISTIIMLVPTVLFIVLMVMMMNQGGSRGQGGGIMNFGRSNVKPQD PKKNKVRFDDVAGEEEEKQELVEVVEFLKNPARYTKLGARIPSGVLLEGPPGTGKTLLAK AVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFTNAKKNAPSIIFIDEIDAIGRQRGNG QGGGNDEREQTLNQLLVEMDGFEGDEGVIVMAATNRSDVLDPALTRPGRFDRKVLVGRPD VKGREAILRVHAKNKPLADDVDLKEVARQTPGFVGADLENVLNEAALVAARRNGTKITAA DIDEAEDRVIAGPAKKDRMISKKERERVAFHEAGHSICGLVLSDSRTVRKVTIVPRGRAG GYNIMLPKDDQFILTKKQLFEQIVGLMGGRAGEEVVVGDQSTGASNDFEQATAIAHSMVV NYGMTDELGMVELEKEGEGTPYGFKPYSEATAAKIDEAVKKILDEAHAKAVEIVENNREK HRIIAEALLKYETLDEKQIYSLYKTGKMPEKSSEEFPSEAKALSYEEAKEAAQKRAEEKA EEDTAEKQALATPSEDAVKPETDAAKLAEPDASASQEDPADSLPTPSESDLAKDPEKGDN DAPSQKTEQTDDSDKDE >gi|300496906|gb|AEAT01000065.1| GENE 16 24645 - 25940 1294 431 aa, chain - ## HITS:1 COG:BS_yacA KEGG:ns NR:ns ## COG: BS_yacA COG0037 # Protein_GI_number: 16077135 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Bacillus subtilis # 5 230 2 233 472 154 37.0 4e-37 MDIEKRLLAFFAEEGLPLEGNFLVAASGGPDSMALLDLMRRLPGGFQLYAAHLDHQLRAD SQKESQLLRAYCHKYQLPLYESVWPKSLHPESGLEAAARDYRYNFLFEVARQVKADYLLT AHHGDDLLENILLKLVRSGIPREMNSLKPVSQWGQVKLVRPLLAVGKADLLAYAKKQGLE YVEDETNFTGITARNRLRQEVVPLLKRESPDLLENAWRFSQEMTAEEDYFAQAAGKLPEP EPFFGGWRIPKAAGQAESELVKAYLENFIQKKYNKRVQLDRILLANRQSQEKGGLHLSFY QGYYWLYPVKQPAPSPLEEVVAGQPFFFRGNCYLLSEEKREESPLAEISFPGKLSAGSLP NGQRLLLKDGRRTKSKKLFAAAGIPLALRGNCLSLFAGQEAVYVAGCYQQAVKEGKRPLY LYQVKTCKKGR >gi|300496906|gb|AEAT01000065.1| GENE 17 25986 - 26342 359 118 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|58336615|ref|YP_193200.1| putative ribosomal protein S1 [Lactobacillus acidophilus NCFM] # 1 117 1 117 120 142 54 3e-33 LMNYKVGQRLDGVINNVTDLGIFVTLPKHKSGLVHRNDFGSDWPRERQHWQAGDQARVVV QNLRKGRLDLSIRRVNDPDLIDPTNQFSQLRAGDFARVLNQVDQEARAEIEQLEAALK >gi|300496906|gb|AEAT01000065.1| GENE 18 26339 - 26719 674 126 aa, chain - ## HITS:1 COG:no KEGG:Ldb0365 NR:ns ## KEGG: Ldb0365 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 126 1 126 126 185 100.0 5e-46 MGNNRGNQQNVTPLRPDQDVRRLKKRQIKFREVHRVRRNRLLALILLVFAVLGFQLAMTK ARTAKIQKQVSQNQATLTKIKKNKEKLTNERDDMKDSDYVAKVIRYKYKYTKDGERVYNI KEKGDN >gi|300496906|gb|AEAT01000065.1| GENE 19 26785 - 27027 364 80 aa, chain - ## HITS:1 COG:L1001 KEGG:ns NR:ns ## COG: L1001 COG1188 # Protein_GI_number: 15671997 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Lactococcus lactis # 1 79 17 95 105 78 50.0 3e-15 MRIDKFLKISRLVKRRTVAKEMADQGRVSVNGKTVKSSYNVVVGDVIAVAYGTRVIKARV LDLRETTKKAEAGDLYELVD >gi|300496906|gb|AEAT01000065.1| GENE 20 27095 - 30571 5060 1158 aa, chain - ## HITS:1 COG:BS_mfd KEGG:ns NR:ns ## COG: BS_mfd COG1197 # Protein_GI_number: 16077123 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Bacillus subtilis # 23 1107 25 1123 1177 1003 47.0 0 MQVIDFLKKDQGVTAFIAKTSRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYK AQERYNDLSRLLADDDLELFALDGNLATQTAVSSPDELSSRIQCLNLLLSGRPGVVIATP QGLQYPLSAPALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVD LYPLDRESPLRLEFFGDEIDTIKTFDLTSQRSLEELPEATVPAASDHVFTAEDLDRAGRE LAGDLPKEAAASLEIAQEALANGQLPDDCDRYLDYLLPESFSLLDYLPAKGLLLFNDWQL IAESVKNMGAINDDYLASQIASKMMTSRQKLRLDFDAVLKADCHHRLYVSMMAHSMGRLR FGQHLAWDSREPQQFFSQMELLKTELDSYAKKGQTVVLQLSSRRQAEEFNRSCHDYDIYL PLAEADGLKEGRAQLVIGGYASGFVLPDSDLVYLTEKELFNQNKRSKKRIKTLENAQRLR SYTELKPGDYVVHVNHGIGRFEGIQTLETDGKKRDYITITYQKGDQLFVPADQLSLVQKY VASEGKQPHVNKLGGSEWAKTKKRVAARVEDIADDLIDLYAKREAEKGFAFSPDGSDQAA FEAAFPYEPTPDQLRATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQV AFLVPTTILAQQHYQTIKDRFKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHR ILSKDVQFKDLGLLIIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRD LSVMETPPQNRYPIQTYVLEQLPGTVKEACQREMQRGGQVFYLHNRVGDIEETVARLEQL LPEARIAYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYG LSQLYQLRGRIGRSVRLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDLSI RGAGNMLGAQQHGFIDSVGYDLYSQMLADAIKERQGKKPVKKSNAEVDLGLEAYIPEDYI ADQEQKIEFYKKIKGIGSLQDREDIEDELLDRFGDYPAAVENLLNVASLKASCDLAQILT LVKEKAQIRVIFSDSGSREMEGPNIFKALEHVSWKARIALGAQKRLVVTLLLPDKLTRRA MFTELGTFTKDAAEIIQR >gi|300496906|gb|AEAT01000065.1| GENE 21 30588 - 31145 932 185 aa, chain - ## HITS:1 COG:FN1597 KEGG:ns NR:ns ## COG: FN1597 COG0193 # Protein_GI_number: 19704918 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Fusobacterium nucleatum # 1 185 1 184 191 155 44.0 4e-38 MKLIVALGNPGLKYEKTKHNTGFMALDHYLDEKGLRLDRDKFTALYAKEKVAGEDVIFME PQTYMNESGRAVGAAAKFFKIDPSDILVIHDDMDMPIAKLRIRAGGKSGGHNGIKSIIAC LGTEKFNRLKIGIRHPDKQSVVSWVLTPFNPDQQKELEASFAKVDQIIDDFIAGKDAQYL MNRYN >gi|300496906|gb|AEAT01000065.1| GENE 22 31315 - 32013 1267 232 aa, chain + ## HITS:1 COG:lin0562 KEGG:ns NR:ns ## COG: lin0562 COG0517 # Protein_GI_number: 16799637 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 213 1 209 211 221 53.0 1e-57 MLIKSLVIKKDYLTTVNEHATLEEALKVLESSGYRCVPILDDSGKIFRGNIYKMHIYRHK SQGGDMSLPVTYLLKNATKTIKINAPFFQVFFTIKDLPYIAVLDTDNTFYGILTHARLLD MLSSAWNVKTGAYVLTVLSTNDSGNLTKMTKIIAKFVNLAGAMTLDAPASEFDGKYVRRT LFTLPQGTTETELKAICKKLKAKGFPVVAVEDLAAGMNIMSEEKPGVFLNEE >gi|300496906|gb|AEAT01000065.1| GENE 23 32068 - 33198 1584 376 aa, chain - ## HITS:1 COG:L0103 KEGG:ns NR:ns ## COG: L0103 COG0787 # Protein_GI_number: 15672826 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Lactococcus lactis # 1 373 1 366 367 320 45.0 2e-87 MITAVNRPAALHINLAAIKENTRQAKAHLKPGQKLFCVVKANAYGHGASRLAPVMEEAGA DGFCVAMLDEGLELRRVQIVKPILVLGLQPAEEAALAAANDISLPVSSLDWLKKAEKVLR KEGLQLKIHLAIDSGMGRIGFSEDEDFKAVNEYLQGNDAFFVEGMFTHFASADSADASYF DYQVKRFKHMESLLTVKPKWIHVDNTAASLFGKDVASDIVRFGIGLYGLNPSSAPGSQDL EPAFALKPAMSFVSELTYVKQIHKGYGVGYGSTHIAEEDEWIGTVPVGYADGWIRKFQGF KVKVGDTYCPIVGRVCMDQFMVLLPKEVPAGTPVELISADPAAPNSLRRAADWLDTIHYE VACQFNDRLDRIYDNE >gi|300496906|gb|AEAT01000065.1| GENE 24 33195 - 33608 365 137 aa, chain - ## HITS:1 COG:SP1699 KEGG:ns NR:ns ## COG: SP1699 COG0736 # Protein_GI_number: 15901533 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Streptococcus pneumoniae TIGR4 # 1 117 1 116 120 99 46.0 2e-21 MIKNIGVDQIEVDRISKVVDRGDGFARKVLTDREFAQYQDLTHKRKIEYLGGRFAIKEAF SKAWGTGIGQAVSFEDVETLRTESGAPVTTSRIFTGRIFSSIAHDDHEIVAVVVLEEPAG WRRAIGKLSHLLSGRKK >gi|300496906|gb|AEAT01000065.1| GENE 25 33693 - 35138 2028 481 aa, chain - ## HITS:1 COG:lin0859 KEGG:ns NR:ns ## COG: lin0859 COG0513 # Protein_GI_number: 16799933 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 2 437 3 438 516 548 63.0 1e-156 MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL QKLDLDKQEQAIQAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALKK APEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQTL LFSATMPKPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLIDVEN PDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDV AARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMRTIEDLT KKKMSPLRPPTDAQAFAGQMKQAVLKVDDLLSGDLSKYDDAAEKLLENYSAEDIAAALLK ELSNDSEVTVTITPENPRSYRGKHSGGRGSRSRSGNNNFKGKRNFDRKKRKPGFKFHGRK G >gi|300496906|gb|AEAT01000065.1| GENE 26 35148 - 36515 2034 455 aa, chain - ## HITS:1 COG:SPy1420 KEGG:ns NR:ns ## COG: SPy1420 COG0770 # Protein_GI_number: 15675337 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 1 454 1 452 463 344 41.0 2e-94 MKMQLAEIAQALNTSCEGDAETVITSVAFDSRKISQGALFVPIKGERDGHDFVGSAIEAG ASATLWEAGHPNKPEGIAVLEVADTLKAMQDLARYYLQKVNPTVVGITGSNGKTTTKDMV AAVLAKRFNVYKTQANFNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARPDV AVITMIGEAHIEFLGSRDKIADAKMEITDFLQEDGEFIYNGDEPLLAERAAKLSQDKSTF GFADSDSIHASDLRSTMHHSFFKINGTDREFSIPMIGRHNVANAMAAILVGRHFGESDEE IAAGLANFVPTANRMEWEKGDCGEDIMSDIYNSNPTAVKAVTASFGQVPVSEGGRRIAVL ADMLELGSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLDKYGQQNLHYYPEDEM SHLIDDLKSDIHSQDIVLLKGSHGMHLERVLDRLK >gi|300496906|gb|AEAT01000065.1| GENE 27 36623 - 36874 433 83 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773510|ref|YP_618490.1| 50S ribosomal protein L31 type B [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 83 1 83 83 171 97 9e-42 MKQGIHPDYQEVCFMDSATGFKFVAGSTLKSSETVEFEGNTYPLIRVEISSDSHPFYTGK QKFAAADGRIERFNKKYGFNKKN >gi|300496906|gb|AEAT01000065.1| GENE 28 36974 - 38245 1741 423 aa, chain - ## HITS:1 COG:SP1081 KEGG:ns NR:ns ## COG: SP1081 COG0766 # Protein_GI_number: 15900950 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Streptococcus pneumoniae TIGR4 # 1 423 1 419 419 421 56.0 1e-117 MKQMIIHGGKPLQGDIWIGGAKNSTVALIPASILSRTPVTLESVPRIADVDNLMDLLSEM DVHCDFRETTLQIDPTEIKMSPLPAGKIKSLRASYYFMGALLGRFGKAVVGFPGGDDIGP RPIDQHIMGFQSLGADVRYENEQIVITAPDEGLKGAQIHLKMASVGATMNIIMASVTASD RTVIENAAKEPEIIDLATFLNNMGAKIRGAGTDTIRIDGVDRLEAKVPHTIIPDRIEAGT YISMAACIGNGIRIHNIIAEHLDAFLAKVEEMGVVIDTDEDSLFVYPAGDLRMVQVKTGT YPGFATDLQQPITPLLLTAKTGEGVIIDPIYPKRTRHVPELQKMGASITVVNNIILVQPG SRLRGAVVHADEIRAGACLMLTGLMVDGETVINNAGNILRGYDRVEEKLHQLGADVVIRD VED >gi|300496906|gb|AEAT01000065.1| GENE 29 38366 - 39985 2449 539 aa, chain - ## HITS:1 COG:SP0494 KEGG:ns NR:ns ## COG: SP0494 COG0504 # Protein_GI_number: 15900408 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Streptococcus pneumoniae TIGR4 # 2 531 3 530 535 723 64.0 0 MTKYIFVTGGVVSSLGKGITASSIGRLLKNRGLKVTMQKFDPYINIDPGTMNPYQHGEVF VTDDGTEADLDLGHYERLVDVRTSKYSNVTTGKIYQEVLQRERRGDYHGGTVQVIPHVTN MIKEKVMRAAQMTDTDVVISEIGGTVGDMESTPFMEAIRQMRREVGSENVMYVHVTFVPY LRAAKELKSKPTQQSVSMLRSIGIQPNMLALRSEMPVPQEMKDKISTFTDVPVDYIVESL DAPSLFDVPLSYQEQGVDQKVVDFLHIDSPKPVADMDEWRRMDERAKNLKYKTKITLVGK YVELEDAYISVTDALQHAGYLYNSKIEVEKIQAEDITEDNVAELLKDTQGLIVPGGFGTR GLEGMITSIKYAREHDIPFLGICLGMQMASVEFARNVLHLEDANSAEAEPNCKNNIIDLM ADQRDQEKIGGTLRLGLYPAMLKAGTKTRECYDGQEVIQERHRHRYEFNNKYREDFEKAG MTFSGVSPDNHLVEIVEITDKKFFVAAQYHPEFLSRPNRPEGLFKGFIGAASGLQVDKF >gi|300496906|gb|AEAT01000065.1| GENE 30 40102 - 40626 603 174 aa, chain - ## HITS:1 COG:SPy1895 KEGG:ns NR:ns ## COG: SPy1895 COG3343 # Protein_GI_number: 15675708 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 124 16 138 191 92 56.0 5e-19 MIEVAHAILEDRGERMAFADIVNEMQKYLNKSDEEIRQRLPQFYTDINTDGRFISMGENV WALRTWFKFEAVDEEVDHPEDDGDEASTRKHHRKVNAFLATTEGDDVIDYENDDPEDEDL SDDSDADEDDADDNSGDDYDDNEDDEDDDSLPDGIEGQLSQMDDDDLDDDVDEE >gi|300496906|gb|AEAT01000065.1| GENE 31 40717 - 41115 462 132 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0300 NR:ns ## KEGG: LDBND_0300 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 132 1 132 132 225 99.0 4e-58 MSKIKIDLTSKITQGEQTETIRQQAEGELREDGAVKRIFYESEKVPVKMLVKEQELLIRR GTDHSNFSQMHFILGEKGQCKYVVEGRQLDLLSETKRLELKENAAGQQLEVEYDLFSGVD LIGSYAVSLIFA >gi|300496906|gb|AEAT01000065.1| GENE 32 41239 - 42567 1778 442 aa, chain + ## HITS:1 COG:SP1290 KEGG:ns NR:ns ## COG: SP1290 COG1078 # Protein_GI_number: 15901150 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Streptococcus pneumoniae TIGR4 # 17 426 3 409 434 475 55.0 1e-134 MEDLLLTKFDSPKLAREVVVRDPVHGYIHLDTQVALEVVRSQEFQRMRRIKQLGPTAFVF PGATHTRFEHNLGVYELARRISNLFTDKYPSQSTGDGLWDPSENLLVQMAGLLHDIGHGP YSHTFEHLFGTNHEQIGQQIILDPSTEVNQALSKVDPDFPKAVASVIAKTYPNPQVVKLI SSQADADRMDYLLRDAYFTGASYGEFDLSRILRVIRPYEKGVCFTANGMHAVEDYIVSRY QMYQQIYYHRVNRSMEVILHHLLKRAQYLYQEKELPVTPSLARFLAGTWDLQDYLKMDDG VMETNFSMWTESSDPVLADLTKRYLFRRPLASAKINEESKQLLPQLKDLIKKAGFDPDYY TGVGSAFDEPYDAYKPSGKNANSQIEIMQEDGSLIELSQLSPLVKALNGTLQGDERFFFP VAMLKQADFQQYLKNGELLTKK >gi|300496906|gb|AEAT01000065.1| GENE 33 42639 - 43643 1405 334 aa, chain - ## HITS:1 COG:L25614 KEGG:ns NR:ns ## COG: L25614 COG0462 # Protein_GI_number: 15672796 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Lactococcus lactis # 9 323 1 316 324 409 66.0 1e-114 MLFFSEGIMSYKDNIKLFALNSNKPLAEKIAKQMGLKLSTSSVVRFSDGEIQVDIDDSVR GKDVFLIQSTSAPVNDNLMELLIMIDAVRRASAASVNIVLPYYGYARQDRKTRAREPITA KLVADMIQAAGADRVLSLDLHAPQIQGFFDIPVDNLMGAPLLADYFLSNHLEEDAVVVSP DHGGVTRARKLAEFLGTSIAIVDKRRPKANVAEVMNIIGDVKGKRAILIDDMIDTAGTIT LAAQALKDAGATEVYACATHAVLSGPAVDRLNNSVIKSLVLTDSIQQPAEKNLDKMILVS VGPLMGDAIKLIMEHKAMSPLFDTRYDANKYKDK >gi|300496906|gb|AEAT01000065.1| GENE 34 43849 - 44652 1493 267 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0304 NR:ns ## KEGG: LBUL_0304 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 267 1 251 251 170 86.0 5e-41 MKFTKKIAFASASLALTMATPAALLTQNAAFAKTTTVKQATKVKVTKKTTPFYHKDGSKF TKKKPYVYGSWKSTVAYKNTSYNVVKTVTIKGAKYYYIGNDAYLKASDVKVTATKTVKSS STSSAKKASTSSSKTTSKKTSSTSSSSKSSSKKTSSTSSSSKSSSKKTSSTSSSTSSSSS SKKTSSKKTVTQIQVTKKTTPFYHKDGSKFTKKSPYVYQSLGWKSTVAYKGTEYKVFKTI TIKGSKYYYIGNSAYLKASAVKVIASK >gi|300496906|gb|AEAT01000065.1| GENE 35 44822 - 46207 2305 461 aa, chain - ## HITS:1 COG:lin0237 KEGG:ns NR:ns ## COG: lin0237 COG1207 # Protein_GI_number: 16799314 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Listeria innocua # 3 448 4 449 457 507 58.0 1e-143 MGKYVIVLAAGKGTRMKSKLYKVLHQVCGKAMVEHVVDAARAVKPSKIVTIVGHGAEDVE KVLAGKSEFAMQEEQLGTGHAVMQAEGQLAALEGATLVVTGDTPLFTSETFEKLFAYHEE EGNAATVLTAEAPDPFGYGRIIRDDQGNVLRIVEQKDGKPEELKVKEINTGVFCFDNQDL WAALKQVGNDNSQGEYYLTDVLEILRKAGKKVGAYKMPDFSESLGVNDRIALAEATRIMQ RRINEGHMRDGVTFIDPATAYIDADVEIGNDTVIEGGVTIKGHTVIGSDCLITSGSRIVD SQIGNGVTVTSSTIEESIMEDNTDIGPNSHLRPKALIKRGAHLGNFVEVKKAEIGENTKV GHLTYVGDATLGKDINVGCGVIFSNFDGVKKFHTTVGDKSFIGAGSTLVSPINVADHAFI AADSTITKDVGKYEMAIARGRQVNKEAYWHKLPLSEDEEWK >gi|300496906|gb|AEAT01000065.1| GENE 36 46269 - 47099 1148 276 aa, chain - ## HITS:1 COG:lin0231 KEGG:ns NR:ns ## COG: lin0231 COG0503 # Protein_GI_number: 16799308 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 268 3 270 272 279 51.0 4e-75 MKRSERLVDMTKFLMERPHTLIALPFFAKRYGAAKSSISEDLAILKHTLASNEDGILETV AGAAGGVRYIPFLGQKPAEKYLKDLAGRIQDSSRILPGGFVYLSDILGGPYDLEMIGKLI ATRYAYANIEAVMTVETKGISLANAVASYLNVPAVTARKRSKVTEGATVSVNYMSSSTSR VAKMELPTRALDKDTNVLIVDDFMKGGGTLDGMRQLVKEFDCQVAGVCVLCETEYEEERK IKDYVSLVNIDQIDSEKEIILAQPGNFLTRTNFDRF >gi|300496906|gb|AEAT01000065.1| GENE 37 47206 - 47457 227 83 aa, chain - ## HITS:1 COG:SA0452 KEGG:ns NR:ns ## COG: SA0452 COG4466 # Protein_GI_number: 15926171 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 83 1 83 87 90 50.0 8e-19 MPINIQDIKQKLDTHLGEELTIVAQAGRKKVTRRRGILKNTFPAVFVVALDQDSNNFEHA SYSYTDVLTKNILLEFDDESDAE >gi|300496906|gb|AEAT01000065.1| GENE 38 47517 - 48407 1332 296 aa, chain - ## HITS:1 COG:BH0057 KEGG:ns NR:ns ## COG: BH0057 COG0030 # Protein_GI_number: 15612620 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Bacillus halodurans # 7 291 5 286 289 205 42.0 7e-53 MTNRIPIASPVRTAAIVNRYFVHAKKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPG IGSLTEQLLLAGGKVAAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFATD LAGFFDLGKPVKVVANLPYYITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPGSKAY GPLSIAVQTQMSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVVKLCF AQRRKTLANNLKTLLPDKEDREKLLDDLDLDPRQRPEQLAIGDFIRISQAIAEMNK >gi|300496906|gb|AEAT01000065.1| GENE 39 48382 - 48954 711 190 aa, chain - ## HITS:1 COG:SPy0261 KEGG:ns NR:ns ## COG: SPy0261 COG1658 # Protein_GI_number: 15674441 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Streptococcus pyogenes M1 GAS # 4 182 6 188 189 145 46.0 4e-35 MQKNFNAVVVVEGKDDTMRLKQFFSGIETVETNGSAVSDAVLAKLKKLARSREIIVFTDP DVNGERIRRIVTEAVPTAKQAFITRKEGEPQKKGSLGVEHASKEALERALSDLREVQAQK AYFDYGDYVDLGLAMGRQSRQLREAVGIKLGIGYANSKRFYQRLQTFGISLAELKQAVEE AENDQQNSNR >gi|300496906|gb|AEAT01000065.1| GENE 40 48938 - 49717 919 259 aa, chain - ## HITS:1 COG:SPy0260 KEGG:ns NR:ns ## COG: SPy0260 COG0084 # Protein_GI_number: 15674440 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Streptococcus pyogenes M1 GAS # 1 255 19 274 274 253 46.0 3e-67 MKIYDNHTHLNDKPFAGKEADYIQKARDLDVVGMNCVGQDPEMNLGALELAKRFANVKAI IGYCPDVAKDYDQAAEDLLVEQVKGGQVVAIGEIGLDYYWDESPRDVQRKVFARQIEVAR DLQLPVNIHTRDAFADCWQILKEADLEYGAVLHSYNGGPEWTEKFLDLNVNFSFSGVVSF KKAAEVHESAKLVPLDRLLVETDAPFLTPVPYRGRQNEPGYVRYVAQAVADLKGLDLAEV AEATYANTMRIYGLNAEEF >gi|300496906|gb|AEAT01000065.1| GENE 41 49717 - 51699 3199 660 aa, chain - ## HITS:1 COG:L0353_1 KEGG:ns NR:ns ## COG: L0353_1 COG0143 # Protein_GI_number: 15672774 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Lactococcus lactis # 1 534 1 531 540 697 63.0 0 MADNKKTFYITTPIYYPSGRLTIGNAYTTVAADTMTRYKKARGYDTFFLTGTDEHGLKIE QKAEKLGMKPKAYLDGMVKDIKELWKKLDINYDKFIRTTDEEHVKAVQKIFEKLKASGDI YLGEYTGWYSVEDEEYFTESQLKEVFKDDQGNVVGGIAPSGHEVQLVKEPSYFFKMSKYA DRLLQYYKDHPEFIQPNSREKEMVNNFIKPGLEDLSVTRTTVDWGIPVPSDPKHVVYVWI DALANYITALGYGSEDDSLFKKYWPADVHLVGKEIVRFHTIYWPIMLMALDLPLPKQVFG HGWVLIYKDKMSKSKGNAVYPESLISRYGLDPVRYYLMRAIPFGADGSFTPEDFVERTNF DLANDLGNLLNRTVSMINQYQKGLVAPVDQDQDKYGQDLAAVAAKAISDYYGNMDKMHFS NALENVWQLISRANKYIDETTPWVLNKEGMTEELSRVMSNLAESLRLVAIMIAPVMTETP GKMFAQLGLDWEDESQKDLQFGGFAWDVNVVAKPTPIFPRLKNDEEVAYIKEEMKKAKPK KQSRREQKQEEKQITIDDFAKVKIQVGKILSVEPVKGSSKLLMFKLDFGKTGERQILSGI RKFYPDESILLGKKVLAVTNLKPRKMLGHESQGMLLSSEADGDVKLALVGDEHPVGAELG >gi|300496906|gb|AEAT01000065.1| GENE 42 51835 - 54525 3741 896 aa, chain - ## HITS:1 COG:L85514 KEGG:ns NR:ns ## COG: L85514 COG0474 # Protein_GI_number: 15673239 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 12 891 19 905 910 813 48.0 0 MLNKTMNKAASDDAKRVARIALEKRSVTLAQLHTNSNGLSTEEAANIREKTGTNEIASSN QASKLHFLVEAFLTPFTLILLILATMSLFTNYIFVPQREKDLSTVIIMVVMVLVSGITSF IQNVRTSNAVRSLLKMVSVTTNVRRDGKDQEIPTKDVVVGDIINVSAGDMVPADMKLLSS TDLFCSASSLNGESTPTEKNANFVPTPDKMENYLDYPNILFKGTTIVSGSGRGVVFATGE HTVFGKIAAQIADTEMKETTFDTGIKNVSKLLLTMTAIITPLVLVVNGLTKGNWTDALIF AIATAVGLTPEMLPVIVTTNLVRGSLEMSKHQTIVKKMNSIQNFGSADILCTDKTGTLTQ GQVILEKHYNLEMQETDRVLKMAYLNSYYQTGMKDLIDQAVIDVADDDLDTSEIQRDYHK IDEIPFDFQRRRMSVVVANSDQKHGEHLLVTKGAAEEMLAVSSQVEIGGQILPLTEERKK QIFKDIDDLNSDGMRVIVLAYKVDPSPVGKFTVDDERDLIVIGFLTFLDPPKESAKNALA SLNRDGITVKILTGDNEAVTRAVALKVGLNIDTVYGQKDLVGKSDEELAKIVEECDIFVK LSPEWKTKIIDALQKNGHTVGYMGDGINDAPAMKQADVSISVDSAVDVAKESADIILLQK DLSVLEHAVRIGRKTLTNTMKYIKITLSSNFGNILSIMVASVFLPFLPMLPLQLLILDLL YGTSCLALPFDSVSEDYLHVPREWATKNMPKFMFYFGPTSSIFDVITFAVLFFVICPALT GGSYASLGPAGQLAFMTIFHTGWFVESLWTQEMVIHALRDERLPLIQQRASSPVMLATFG AAIFGTFLPFSKLAGAMKFVHLNEEFLWIVAGLLVCYLLLTTVVKHFYMKKEKFLI >gi|300496906|gb|AEAT01000065.1| GENE 43 54883 - 55548 760 221 aa, chain - ## HITS:1 COG:no KEGG:Ldb0340 NR:ns ## KEGG: Ldb0340 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 221 20 240 240 404 97.0 1e-111 MNKLSLTANSSKNWHTNLKTEATRLAWLLALVCLFPLVTGASSFFVQDNAGIINSDTWKM VDQKNAKYQKSDQHPIVIVETLQNAKKTQPAGLSKASRTLYIVINVQKDGTKKAYIYSSS DLHSQFTAQVRANILSHTASKITADDPIAFNEGVQELFKISVTLIDQSLGFKKDSLDLSS EEVNRVIKPADLRIPIMLALLVLIAAVIIFLRFTIRRQGRK >gi|300496906|gb|AEAT01000065.1| GENE 44 55478 - 55924 594 148 aa, chain - ## HITS:1 COG:SPy1823 KEGG:ns NR:ns ## COG: SPy1823 COG2131 # Protein_GI_number: 15675651 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Streptococcus pyogenes M1 GAS # 1 128 12 139 153 176 62.0 1e-44 MMQALVIAQRSTCDRALVGSVLVKDKRILSTGYNGSVSGQDHCDDVGHQLVDGHCVRTIH SEMNSLISCAKNGVSTDNTEIYVTHFPCYNCTKHLLQAGVIKINYYYDYHDSPLAIQLLR DSGVPYEQIKLDRQFVEELAHKLEDGSD >gi|300496906|gb|AEAT01000065.1| GENE 45 55962 - 56987 1703 341 aa, chain - ## HITS:1 COG:SPy2207 KEGG:ns NR:ns ## COG: SPy2207 COG0180 # Protein_GI_number: 15675940 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 337 1 340 340 469 69.0 1e-132 MTKEIILTGDRPTGKLHIGHYIGSLKNRVMLQNTGKYDSYIMIADTQALTDNARNPEKIR NSLIEVALDYLAVGLDPEKSTIFVQSQIPALFELTTDYMDLVTLSRLERNPTVKTEIKQK GFGDSLPVGFLTYPVAQAADITAFKATLVPVGDDQEPMLEQTREIVRSFNRTYNVDVLVE PKGYFPPKGQGRLPGLDGNAKMSKSLGNAIYLSDDAETVKKKVMSMYTDPNHIHVEDPGQ VEGNTVFTYLDVFDPDKDTVAQLKEDYQKGGLGDVKIKRYLNKVLEAELAPIRERRQKYA ENLDAVYDMLYQGSQKANQVADQTLQEVRDAIGFNYFKNRG Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:22:42 2011 Seq name: gi|300496893|gb|AEAT01000066.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00055, whole genome shotgun sequence Length of sequence - 9836 bp Number of predicted genes - 12, with homology - 11 Number of transcription units - 6, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 27 - 554 366 ## COG3177 Uncharacterized conserved protein 2 2 Op 1 35/0.000 - CDS 933 - 1238 344 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 3 2 Op 2 . - CDS 1322 - 2410 1364 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 4 2 Op 3 . - CDS 2403 - 2948 467 ## LDBND_0994 ABC transporter related protein 5 2 Op 4 . - CDS 2930 - 3133 246 ## - Prom 3225 - 3284 2.8 - Term 3230 - 3291 16.0 6 3 Tu 1 . - CDS 3304 - 4254 1055 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases - Prom 4395 - 4454 9.9 + Prom 4359 - 4418 5.8 7 4 Op 1 . + CDS 4441 - 4902 633 ## LDBND_0992 transcriptional regulator 8 4 Op 2 35/0.000 + CDS 4902 - 6629 246 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 9 4 Op 3 . + CDS 6629 - 8386 233 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Term 8396 - 8451 11.1 - Term 8389 - 8433 2.1 10 5 Op 1 . - CDS 8470 - 8778 347 ## COG0607 Rhodanese-related sulfurtransferase 11 5 Op 2 . - CDS 8822 - 9148 232 ## COG0328 Ribonuclease HI - Prom 9329 - 9388 4.6 12 6 Tu 1 . + CDS 9305 - 9616 320 ## LDBND_0987 hypothetical protein + Term 9727 - 9768 -0.8 Predicted protein(s) >gi|300496893|gb|AEAT01000066.1| GENE 1 27 - 554 366 175 aa, chain - ## HITS:1 COG:alr0502 KEGG:ns NR:ns ## COG: alr0502 COG3177 # Protein_GI_number: 17227998 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Nostoc sp. PCC 7120 # 37 154 20 136 151 83 40.0 2e-16 MAKSRPEDAGVYRSVPVRPAGAEVNPYADPWDIAVKMAELVDWATEAQDKLHPVDYAAQL HWRFVIIHPFIDGNGRTARLLMNLALTEHGYPVVNIQPNKESQLHYMEVLEACDRDGSAD KLTDLIADYAEEALRKKLKILELSAKNHTDSGYIISERELEEWRKKREQAKLSDQ >gi|300496893|gb|AEAT01000066.1| GENE 2 933 - 1238 344 101 aa, chain - ## HITS:1 COG:BS_yheH KEGG:ns NR:ns ## COG: BS_yheH COG1132 # Protein_GI_number: 16078037 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Bacillus subtilis # 2 90 536 624 673 70 43.0 8e-13 MIDKDLALVGLTDIVKNLPQGLNTPVSDINLLQGQLQLLMIARSVVCDPQILLLDEMTAS LSLDRETEAKVLKAIDAASSGRTVLSISHRRGAHDGRIIKL >gi|300496893|gb|AEAT01000066.1| GENE 3 1322 - 2410 1364 362 aa, chain - ## HITS:1 COG:SP1839 KEGG:ns NR:ns ## COG: SP1839 COG1132 # Protein_GI_number: 15901668 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 15 329 25 379 583 101 22.0 3e-21 MRNIAKKVIHDHPKSFISMVLLIILSIITSLLPPLALEQIVTHLTDQKEVSLLFALAYLG LIVLSDLFASAQNISITIFGQKLTHGMRSALVQKLNTITTGYLTNHESGAIASVFVNDAD IINMPLILVMTRHFQKASLASQKQNRAAIAKVNHHIPETLRVLSMIHIFEKEDYMEDKYD QYIEESYRAQNKSNWLDSVYSPIILTIEAVVIGLLMIGAAQGQKMQTFFGINAGSAVALI AYVGQIFTPLESIGMEIQSIQDAMAGMSRIQDFLNEADSKPDIYQGEGDYITFDHVTFGY LLDQPILKDYSFKVAKGEHVTFVGRTGKGFLNFSWASTSRKKGRSCWMAVRQTLIPRISA TS >gi|300496893|gb|AEAT01000066.1| GENE 4 2403 - 2948 467 181 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0994 NR:ns ## KEGG: LDBND_0994 # Name: not_defined # Def: ABC transporter related protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 106 1 106 115 219 97.0 4e-56 MFGIVLIIYFGGRNVLHIGWKAWDLASFTTFLACFTKLATKVSHAAKLFNAVQKAQVSWV RIRPLMSDPIYDHYQKEEKVINDLTFDHVATFYHGYPETAVKDINFTASANEIIGITGEV ACRKSLQGHAILLMTHWVDCFSQLDQIIYIHDHQVSVGKHEDLLKKNAGYAKLIEGGQQH A >gi|300496893|gb|AEAT01000066.1| GENE 5 2930 - 3133 246 67 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGGYYSSKTDFIRQQIKWFDDYHNPVITDNYGNISRFAFRDPDLIDRQLQEISVYRSMTQ LPCSASS >gi|300496893|gb|AEAT01000066.1| GENE 6 3304 - 4254 1055 316 aa, chain - ## HITS:1 COG:CAC0089 KEGG:ns NR:ns ## COG: CAC0089 COG0111 # Protein_GI_number: 15893385 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Clostridium acetobutylicum # 1 309 1 310 318 300 47.0 3e-81 MKIVLLEPLGISQESLDKLAEKLTKQGHEFTAYDSFSTDTEELKKRSEGADALIIANHPL PGEVIRADKNLKFISVAFVGIDHVDLEACKEKKIKISNTGGYCNDAVAELAIGLTLDCLR NISAGNEAVQAGEGKGRLQGHELAGKTVGIVGTGAIGCRTAEIFKAFGCKLIGYSRSQKA AALDLGLEYKSLDEVMGEADIVSIHTPLTPETKGLIGKKEIGEMKEGAILINTARGPVVD TEALAAALKEGRIKAGLDVFDQDPPLPADYPLIGVPNLVCSPHVGFDTKESIDRRAEMAF ENVTAWLNGQQIRTML >gi|300496893|gb|AEAT01000066.1| GENE 7 4441 - 4902 633 153 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0992 NR:ns ## KEGG: LDBND_0992 # Name: not_defined # Def: transcriptional regulator # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 153 1 153 153 265 100.0 4e-70 MNLKKHESISESVTLASVRATYAYEQYDKLMGITQYESIILYELFTHPRLSQKELVYRSG IPKQSISKGIHNLAELGYLEISSADQDKRVKYCALTESGLAYAREKEGEILAIEKKVIDK LGFDRAALACQILDEWSDLLSKEIANLKEEKQK >gi|300496893|gb|AEAT01000066.1| GENE 8 4902 - 6629 246 575 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 326 555 126 354 398 99 28 9e-21 MKILLPYFKRYKKDVFLTLITIVFSAFATLYQPRLLQQVQNELLADQQQAVIRDTAILIG LGLLSIITGVLNVYYASRITQGVVSDLREDTYAKIQTFSLANVQQFSSESLSVRLINDMQ QIMNMIMTIFMQLIRMPLILIGSIIMAIVTIPRYWWAVVVLLALIMGLGVVAVKQITTMF DKFQMYMDKISGRTGEFLQGVRVVKSFNQSPQEIAKLNKDSDELNEVNIKVGYWFSTILP GAQLISYLVISLVVYLIGTSILQHPQDVSVITPYVNYVLTMLFAILLVGMAVMQISRGNV SLRRIQEIMDTQPDVVFNEKAPEDALGGSIEFDDVSFTYPDGQQPVLKHISFAVAPGQMV GIVGATGSGKSTLAQLIARLYDPTTGKIKIGGSDLRQVNENALRKTVSYVLQKAVLFSGT IADNLRQGKKDATSYELERAAQMAQASEFIQRYDETFDHEVEERSANLSGGQKQRLSIAR GIIAGSPILILDDSTSALDAESEKLVQEALEKQLPDTTTIMIAEKIVSVMHADKILVLDN GRLVAEGTHEELLKTSPVYQEIYKTQKAKERKEEL >gi|300496893|gb|AEAT01000066.1| GENE 9 6629 - 8386 233 585 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 362 571 147 355 398 94 30 3e-19 MSDKQKSLTYLTKYLKNYKKPILISIAFYLIATIAQVIAPSLLGQAVTNLSAFVKGHGSL GVFYQALAWMAGFYAFNSVATYIAWMMMTRFNANANNDMRKGLFGKLQRMTIRYFDTHQD GQILSLFNSDLDNIFNALNNAFFEIISQSLLFVGTIIVMFVINWKLALSVVATTPLILLL SWIIMKKARVYLDNQQDRVGELNAYINEQLNGENVIITQGLRDQSVAGFKKENAKVREAM FKGQFYSGILNPLVSGFSLLNFAIVIATGAYMIMTKQVNQAAGLGLIVTFTEYSWTYFQP LTQVTSIYSMLQLALTGARRLETVEEQEEENTVPDGKTISGVNDAVRLEDVHFGYTPDKE ILHGVSIEVPKGQSVAVVGPTGSGKTTIMNLINRFYDVNSGAVTFDGVDVRDLKLENLRS NVGIVLQDSVLFSGTVADNIRYGKPEASMDEVIAAAKEAQLHDFVMTLPEQYDTPIENGQ ANFSTGQKQLLSIARTILVDPAFLILDEATSNVDTVTEEKIQKAMDNVIAGRTSFVIAHR LKTILNSDKIVVLKDGQVIEEGPHADLIKKRGFYYQLYTSQMAFE >gi|300496893|gb|AEAT01000066.1| GENE 10 8470 - 8778 347 102 aa, chain - ## HITS:1 COG:VCA0100 KEGG:ns NR:ns ## COG: VCA0100 COG0607 # Protein_GI_number: 15600871 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Vibrio cholerae # 22 93 43 113 123 69 50.0 1e-12 MNLFQVNDINAGVEEYQKTPQAKLIDVREEDEYAAGHIPASINIPLSKIESAQGEITDLD TPLFVYCRSGNRSGQAVAWLKQAGYSKVQNIGGIANYSGKTE >gi|300496893|gb|AEAT01000066.1| GENE 11 8822 - 9148 232 108 aa, chain - ## HITS:1 COG:PA1815 KEGG:ns NR:ns ## COG: PA1815 COG0328 # Protein_GI_number: 15597012 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Pseudomonas aeruginosa # 20 101 66 138 148 56 31.0 1e-08 MTAFLESLKKLEQLGLTQQPLLFVLNSQYVIKSVSDTKDGPAWMKSWKKRDWKTANGKPV ANQELWQDIDREMAKFDSSKLKFACLRSTVSDAGSDFVDSLLIKRMDE >gi|300496893|gb|AEAT01000066.1| GENE 12 9305 - 9616 320 103 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0987 NR:ns ## KEGG: LDBND_0987 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 103 43 145 145 151 90.0 8e-36 MIAAELITLINLTYSYFEFNTQTQFILSIFELLILFDARLYTYLFDDEAESFTIKDYWSY FDKSDQTWLVIYVSSLFVPFISAKLTGLPPYPTFAELDQLFPF Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:22:58 2011 Seq name: gi|300496884|gb|AEAT01000067.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00007, whole genome shotgun sequence Length of sequence - 5619 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 4, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 265 147 ## LSL_0348 hypothetical protein 2 1 Op 2 . - CDS 151 - 441 238 ## LBUL_0755 hypothetical protein - Prom 486 - 545 5.6 + Prom 464 - 523 5.9 3 2 Op 1 . + CDS 589 - 1152 882 ## COG4475 Uncharacterized protein conserved in bacteria + Prom 1189 - 1248 10.8 4 2 Op 2 . + CDS 1289 - 2002 918 ## COG2188 Transcriptional regulators + Term 2008 - 2069 14.4 - Term 1994 - 2057 14.0 5 3 Op 1 2/0.000 - CDS 2078 - 2851 1264 ## COG0345 Pyrroline-5-carboxylate reductase 6 3 Op 2 22/0.000 - CDS 2865 - 4112 1794 ## COG0014 Gamma-glutamyl phosphate reductase 7 3 Op 3 . - CDS 4135 - 5211 1161 ## COG0263 Glutamate 5-kinase - Prom 5239 - 5298 6.0 - Term 5278 - 5311 4.1 8 4 Tu 1 . - CDS 5328 - 5528 245 ## Ldb0836 hypothetical protein - Prom 5549 - 5608 3.9 Predicted protein(s) >gi|300496884|gb|AEAT01000067.1| GENE 1 1 - 265 147 88 aa, chain - ## HITS:1 COG:no KEGG:LSL_0348 NR:ns ## KEGG: LSL_0348 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 5 88 123 207 218 103 62.0 2e-21 MASLLPAGFLCLYGVAFAVFCGVLWECYEFTCDGLFAMNLQRYLSAGRALAGRAALLDTM GDLIADLASSLLFSCWSYWQLKNDRSWL >gi|300496884|gb|AEAT01000067.1| GENE 2 151 - 441 238 96 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0755 NR:ns ## KEGG: LBUL_0755 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 59 1 59 59 70 98.0 2e-11 MHKQSLALKFSFVFVVLSIAISLLTAAWQLAQGKSGSLLLVLETGAGLLLVLLPALLSKW LRFYLPAFCACTGWPLPSSAGSSGNAMSLPVTVFSP >gi|300496884|gb|AEAT01000067.1| GENE 3 589 - 1152 882 187 aa, chain + ## HITS:1 COG:BS_ywlG KEGG:ns NR:ns ## COG: BS_ywlG COG4475 # Protein_GI_number: 16080744 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 183 1 178 180 172 49.0 4e-43 MDLAEIQKQAKQAVSEIVEASGIKAGQFFVVGCSSSEVLGEAIGTNTSTDVAEALYQGIN EVLEQKRIFLAAQCCEHLNRALVVSREAMEKYNLEQVNAIPQPNHAGGAFATVAYQKMPN AVLVEDIAARGEAGIDIGGTLIGMHLHPVVVPLRISLDKIGEARIICARRRPKYVGGQRA IYDQALM >gi|300496884|gb|AEAT01000067.1| GENE 4 1289 - 2002 918 237 aa, chain + ## HITS:1 COG:lin0901 KEGG:ns NR:ns ## COG: lin0901 COG2188 # Protein_GI_number: 16799974 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 234 1 233 237 216 46.0 2e-56 MKKYQLIANTIKERIIKGIYPQQSFLPKQEELAEEFSVSKITVKSALDLLEREGFVYKES GLGTKVLSNLILLGQHDSPVNSFAGLSAENGSDRVSSKIIKFEVAFPSADLCEKLNLDEN DPVYEIIRLRLLDDEPLVIEHTYMPVSPVPALSKRILEGSIYSYLHKKLHIKFGGVFRRI KADLPDKYDRQYLGANESTPILEIEQIVWTNSGVNLEYSRSRNLYNNRSYIMVETSH >gi|300496884|gb|AEAT01000067.1| GENE 5 2078 - 2851 1264 257 aa, chain - ## HITS:1 COG:SP0933 KEGG:ns NR:ns ## COG: SP0933 COG0345 # Protein_GI_number: 15900813 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Streptococcus pneumoniae TIGR4 # 1 257 1 264 265 226 50.0 5e-59 MKVGFIGLGNMGSAIARAVAKCDDVSLLLSSHNPEKAGKLQAEIGGQLLDNAQVAAESDV VFLGVKPYQVASTIKEIGENSNNGSIWISMATGVSLETLAKLLPGHDLVRMMPNTPVAIG QGMTSYTSQSSQAKDVFKELMAHSGKVVEIQEGLMDAATAVAGCGPAFVYQFIEALGDAG VQNGLSRSQAIEMAAQTVLGSAQMVLATGQHPAQLRDAVTSPGGSTIAGVVELEKNGFRY AAISAVNAALKRNQELG >gi|300496884|gb|AEAT01000067.1| GENE 6 2865 - 4112 1794 415 aa, chain - ## HITS:1 COG:NMB1068 KEGG:ns NR:ns ## COG: NMB1068 COG0014 # Protein_GI_number: 15676952 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyl phosphate reductase # Organism: Neisseria meningitidis MC58 # 4 415 2 420 420 468 61.0 1e-131 MTESSTQQLMDSLLANKAAVNLANTADKNEALALMADSLLDHEAEIIAANQLDLEKAKGQ IPDVMLDRLRLTPDRLAGMASGIRALIDLPDPVGRLLGEHTADNGLKIEKRSVPFGLIGM IYESRPNVTSDVAALALKSGNAALLRSGKDAFNSANAIMQALKAGLAKSKISPKVIELVQ DTSRQSSTEMMTARGKIDLLIPRGGKGLIRAVVDNAKVPVIETGTGICHIYVNKAANLDE AVKITANAKMSRPSVCNAAEVCLVDQEVAADFLPRLAAAFAGKVEMRADERAKEFLPEAK AAGPDDFDTEFLDYIMAIKVVDGIEEAIDHIAKHSTHHSEAIVTEDQAAADRFTQAVDSA AVYVNASTRFTDGGEFGLGCELGISTQKMHARGPMGLNELTSYKYIVRGQGQVRE >gi|300496884|gb|AEAT01000067.1| GENE 7 4135 - 5211 1161 358 aa, chain - ## HITS:1 COG:NMA1268 KEGG:ns NR:ns ## COG: NMA1268 COG0263 # Protein_GI_number: 15794201 # Func_class: E Amino acid transport and metabolism # Function: Glutamate 5-kinase # Organism: Neisseria meningitidis Z2491 # 1 356 1 357 369 402 57.0 1e-112 MKDNLIVFKVGTSSLTSPAGDLDPEKIKKITRQLAQLHQAGYKLVLVTSGSIAAGFRRLG FDKRPRKVANKQAAAAVGQGLLIEEYTRSLLVQGVVSAQILLTQDDFADQRRYQNAQTAL NVLLSRRVIPIINENDTIAIDELKVGDNDTLSAQVASLLKADLLVLLTDVPGLYSDNPRK NPDARPIPIINEITPQIFAMAGGTGSSNGTGGMATKIKAADMATKSGVPVFICSADSTAL VDAVHQKNQGTLFTANENAFNQKKQWLAFYAPAKARVYIDHGAVHAMAREGSSLLISGIK QVQGNFKKDDIVEVYSLKSKKLIGKGKARFSRPVLEEILEQKHPEGIFIHRDDWVTTL >gi|300496884|gb|AEAT01000067.1| GENE 8 5328 - 5528 245 66 aa, chain - ## HITS:1 COG:no KEGG:Ldb0836 NR:ns ## KEGG: Ldb0836 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 66 1 66 66 113 95.0 3e-24 MGRYIVCIVWGMIFTFIIGFIGAPLTQSTYNPVTLLIVGAVFGLLFSLTIPKITARSYND DSAYSK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:23:11 2011 Seq name: gi|300496863|gb|AEAT01000068.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00044, whole genome shotgun sequence Length of sequence - 21266 bp Number of predicted genes - 22, with homology - 22 Number of transcription units - 11, operones - 5 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 37 - 1029 1532 ## COG0516 IMP dehydrogenase/GMP reductase - Prom 1057 - 1116 3.3 + Prom 1014 - 1073 6.2 2 2 Tu 1 . + CDS 1215 - 2504 2146 ## COG0104 Adenylosuccinate synthase + Term 2527 - 2576 8.1 - Term 2513 - 2562 7.2 3 3 Tu 1 . - CDS 2588 - 3031 786 ## COG0782 Transcription elongation factor - Prom 3078 - 3137 10.3 + Prom 2993 - 3052 4.6 4 4 Tu 1 . + CDS 3277 - 3702 749 ## COG0071 Molecular chaperone (small heat shock protein) + Term 3717 - 3750 3.8 + Prom 3718 - 3777 5.2 5 5 Op 1 . + CDS 3799 - 5112 1907 ## COG3579 Aminopeptidase C 6 5 Op 2 . + CDS 5165 - 6478 2125 ## COG3579 Aminopeptidase C + Term 6567 - 6608 5.4 - Term 6555 - 6596 7.0 7 6 Op 1 . - CDS 6611 - 6871 262 ## LGAS_1763 integral membrane protein 8 6 Op 2 44/0.000 - CDS 6825 - 7778 1389 ## COG4608 ABC-type oligopeptide transport system, ATPase component 9 6 Op 3 44/0.000 - CDS 7793 - 8836 565 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 10 6 Op 4 49/0.000 - CDS 8850 - 9881 1404 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 11 6 Op 5 21/0.000 - CDS 9903 - 10823 1134 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components - Prom 10875 - 10934 7.5 - Term 11184 - 11230 8.8 12 6 Op 6 . - CDS 11251 - 12897 2391 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 12969 - 13028 5.5 - Term 13043 - 13080 8.0 13 7 Op 1 . - CDS 13126 - 13458 474 ## LDBND_0237 ABC oligopeptide transporter periplasmic component 14 7 Op 2 . - CDS 13455 - 13829 510 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 15 7 Op 3 . - CDS 13817 - 14029 344 ## gi|325684844|gb|EGD26992.1| hypothetical protein HMPREF5505_1358 - Prom 14092 - 14151 10.7 - Term 14142 - 14181 6.8 16 8 Op 1 6/0.000 - CDS 14203 - 15831 2803 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 15966 - 16025 5.7 - Term 16017 - 16049 4.0 17 8 Op 2 6/0.000 - CDS 16061 - 17689 2616 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 17771 - 17830 8.0 - Term 17860 - 17902 10.4 18 9 Op 1 6/0.000 - CDS 17967 - 18428 513 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 19 9 Op 2 . - CDS 18496 - 19092 767 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 20 9 Op 3 . - CDS 19136 - 19297 64 ## gi|325684837|gb|EGD26985.1| oligopeptide ABC superfamily ATP binding cassette transporter, binding protein - Prom 19384 - 19443 2.7 21 10 Tu 1 . - CDS 19497 - 20147 800 ## COG1418 Predicted HD superfamily hydrolase - Prom 20215 - 20274 5.7 - Term 20886 - 20915 1.2 22 11 Tu 1 . - CDS 20923 - 21096 96 ## Tthe_2650 hypothetical protein - Prom 21206 - 21265 9.7 Predicted protein(s) >gi|300496863|gb|AEAT01000068.1| GENE 1 37 - 1029 1532 330 aa, chain - ## HITS:1 COG:SA1172 KEGG:ns NR:ns ## COG: SA1172 COG0516 # Protein_GI_number: 15926918 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Staphylococcus aureus N315 # 7 329 1 323 325 483 68.0 1e-136 MNNYFSMEAFDYDDIQLVPNKAIVKSRKECDTSVKFGNRTFKIPVVPANMESVIDEKLAV WLAQNGYYYVMHRFQPEKRADFIKMMHEKGLFASISVGIKGDEYDFIDELVEKDLIPEYT TIDVAHGHSVYVIDMIKYIKEKMPDTFLTAGNVATPEAVRELENAGADATKVGVGPGKAC ITKLKTGFGTGGWQLAALRMCSKVARKPLITDGGIRHNGDIAKSVRFGASMVMIGSMLAG HEESPGNVIKIDGKTYKQYWGSASEVQKGAYRNVEGKQMLVPYRGSIADTLEEMKEDLQS SISYAGGRDLESIKRVDYVIVKNTIMNGDY >gi|300496863|gb|AEAT01000068.1| GENE 2 1215 - 2504 2146 429 aa, chain + ## HITS:1 COG:SP0019 KEGG:ns NR:ns ## COG: SP0019 COG0104 # Protein_GI_number: 15899967 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 428 1 428 428 572 61.0 1e-163 MTSIAVVGSQWGDEGKGKITDFLGTTADLSVRANGGNNAGHTIDFDGKEFKMRLIPSGIF AAKLGAVIGNGLVINPEVLLGELDNLEKSGIDTSNLKISNRAHVIMPYHVMQDTYEEEAK GSLKVGTTKNGIGPTYMDKASRIGIRVCDLIDPETFAEKLRFNLESKNALFTKVYGKPAM DFDEIYNKYVEYGKRIAKYVCDTSLYVNDALDRDEKVLFEGAQGIMLDIDQGTYPFVSSS NSVSGGIASGSGIGANRIKTVLGICKAYTTRVGAGPFPTELHDETSDKIRDIAHEYGTVT GRPRRVGWFDSVALRHAKRVAGINALSLNLLDVFSGFDKIKICVAYDLNGKQIDYYPASL KEVEACQPVYEELPAWEEDITGAKSWEDLPEKAQAFVKRISEITGIPVVTVSVGPDREQT IVLQDPWTL >gi|300496863|gb|AEAT01000068.1| GENE 3 2588 - 3031 786 147 aa, chain - ## HITS:1 COG:BH1276 KEGG:ns NR:ns ## COG: BH1276 COG0782 # Protein_GI_number: 15613839 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Bacillus halodurans # 1 147 9 158 158 88 40.0 5e-18 MTPEGYKQIEDEIAALKADRPRRVQNLKEARALGDLSENTEYSTAKRELRHLDSRVRYLN KQLKYAEVIETVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGKLPFDSPLGHA LMKHKAGDRVTVEAPMGDYEVTILSVK >gi|300496863|gb|AEAT01000068.1| GENE 4 3277 - 3702 749 141 aa, chain + ## HITS:1 COG:CAC3714 KEGG:ns NR:ns ## COG: CAC3714 COG0071 # Protein_GI_number: 15896945 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Clostridium acetobutylicum # 36 128 45 137 151 72 41.0 2e-13 MTNDLMNRYNDLFDHMGGWLDNSKDFLDSHAFRNILQSDVAEDEHEYTVKVDVPGMSKDD IHLSYTDGILTISGHRSTFKDDSDKKKNLLRQERSEGSVSRSFSLPNVDKKGISAKLDGG VLTVTLPKAAPEENEDTITIE >gi|300496863|gb|AEAT01000068.1| GENE 5 3799 - 5112 1907 437 aa, chain + ## HITS:1 COG:lin2432 KEGG:ns NR:ns ## COG: lin2432 COG3579 # Protein_GI_number: 16801494 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Listeria innocua # 1 436 1 436 441 360 41.0 4e-99 MSHELSPQLLESFSRDFNADPKNQVISRAARRSGLLEAAYNPAVSQRLNRTFSIELDTDN VTNQQQSGRCWLFSTLNVVRHNFGKANKTKNFTFSQSYNFFWDKIERANYFYDRIIATAD RPLTDRTVRGYFDWCQTDGGQWHTAASLIAKYGVVPAYAMPESFNSNHSQALDMVLADKE RKDALTLRRLAQAGDQEKLEAARTDFLSQIYRIMATALGEPPKTFDLEFRDDDKNYHLDK GLTPVQFYKKYCATDLDDYVVLANAPDHEMNRVLHLGFEDNIKGGYPNLFINVPMEYLED AAIAQLKDGEAVWFGNDVGRQMDRKTGFMDLDLYQLDQLLDIDSHLSKADRLATGIGESS HDMALVGVDVDGGQVRQWKVENSWGDKSGEKGYFTMSADWFREYTYEVAVQKKHVPAEIL DLLKNHPIELDPWDSLI >gi|300496863|gb|AEAT01000068.1| GENE 6 5165 - 6478 2125 437 aa, chain + ## HITS:1 COG:lin2432 KEGG:ns NR:ns ## COG: lin2432 COG3579 # Protein_GI_number: 16801494 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Listeria innocua # 1 437 1 437 441 360 41.0 2e-99 MSHELTLQELAEFSANFNVDPKNQVIARAAARSGVLEASYNERVAGRLTRVFSTELPTDN VTNQKQSGRCWLFSTLNVLRHDFGAKHKAKNFTLSQSYNFFWDKLERANLFYEKVIETAD KPLDDREVRSYFDFAGHDGGQWHMAISLVKKYGVVPSYVMPESFNTSATNGLASALADKE RKDALALRRLAQAGDQEGLEKARKTFLNEIYRMVAIAVGEPPKTFDLEYRDDDKNYHLEK NLTPVSFFNKYFDVDLDDYVVLTNAPDHEYGKLYHLGAEDNVEGGSPILFLNVPMEYLEQ AAVAQLKDGEAVWFGNDVLRQMDRKTGYLDTDLYKLEDLFDVDLSLSKADRLATGAGEVS HAMTLVGVDEDKGDIRQWKVENSWGDKSGEKGFFVMSHNWFKEYVYEVVVHKKYLTKDQQ ELLSSTPVELAPWDSLA >gi|300496863|gb|AEAT01000068.1| GENE 7 6611 - 6871 262 86 aa, chain - ## HITS:1 COG:no KEGG:LGAS_1763 NR:ns ## KEGG: LGAS_1763 # Name: not_defined # Def: integral membrane protein # Organism: L.gasseri # Pathway: not_defined # 39 83 151 195 200 66 66.0 3e-10 MKLPTTKRLPKATRSSLIKQIKKESSSELSFLCFVYFSFLELSFIGWNILAGLSLGIGFL WLVPYYNAAHAEFYRTLAGDQFKSKD >gi|300496863|gb|AEAT01000068.1| GENE 8 6825 - 7778 1389 317 aa, chain - ## HITS:1 COG:BS_oppF KEGG:ns NR:ns ## COG: BS_oppF COG4608 # Protein_GI_number: 16078212 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, ATPase component # Organism: Bacillus subtilis # 6 304 3 300 305 391 67.0 1e-109 MPEERKKILEVKHLKQYFKNGRTVTKGVDDVSFDIYEGEVFGLVGESGSGKTTTGRSILQ LYKPTAGEVLFEGKDVTKLHGRDEQLAFRRDAQMIFQDPYASLNPRMTVEDIIAEGLDIH HLVKDKAERRKRVEDLLETVGLNRNHASRFPHEFSGGQRQRIGIARALAVEPKFIVADEP ISALDVSIQAQVVNLMIDLKKQHDLTYLFIAHDLSMVKFISDRIGVMHYGKLLEVGSADE VYEHPLHDYTKSLISAVPQPDPEIERSRKRIDYEYGKFEGDGKDDQRSMHEIRPGHFVKC TDDEVAYYEKVAQSYEK >gi|300496863|gb|AEAT01000068.1| GENE 9 7793 - 8836 565 347 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 15 317 28 326 329 222 40 2e-57 MANRILDVKNLKIDFHTYAGEVKAIRDVSFHLDEGETLAIVGESGSGKSVTTRSIIGLLA KNSQIMGGQILFHGKDLLKISEKEWQQIRGNQIAMIFQDPMTSLDPTMKIGQQIAEPLIK HKGVSKKEAWAKALEMMKAVGISNAEERINQYPHQFSGGMRQRIVIAIALICEPEILLAD EPTTALDVTVQAEILDLMKDLQKRVKTSIIFITHDLGVVAGMADRVNVMYAGEFLEKGTV DEIFYNPQHPYTWGLINSMPTLTSEKLESIPGTPPDLLDPPKGDPFTPRNKYAMKIDAQM KPPFFKVSETHQAATWLLHPDAPKVTPPDEIVRRWEHYKELQAADKD >gi|300496863|gb|AEAT01000068.1| GENE 10 8850 - 9881 1404 343 aa, chain - ## HITS:1 COG:lin2298 KEGG:ns NR:ns ## COG: lin2298 COG1173 # Protein_GI_number: 16801362 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Listeria innocua # 9 340 5 341 344 315 50.0 8e-86 MDQDASNVKITPESFEHVEKGDTQSAEHISGPSLSFMQNVWIRFKSNKAAMISAVIIIVM VVIAFGSSFWINNSSLVKSAPQYANLPAKWKGFEWLNGLNGKIKQNGVWTDAYASVPAGK YFVAGTDYLGRSLAQRIIYGTKISLIVAVVAAFFDLAIGVAYGIISGWKGGMTDNIMQRI IEIISSVPTLIIVVLMLVVLKPGITSIILALAISSWTTMARQIRAETLSLKNEEYVLAAR SLGESTFKIATKHLIPNLSSIIIIQTMYTIPSAIFFEAFLSFIGIGISAPETSLGVLLNE GQKNFQFLPYQMWYPAVVLCVLMIAFNLLGDGLRDAFDPKGQR >gi|300496863|gb|AEAT01000068.1| GENE 11 9903 - 10823 1134 306 aa, chain - ## HITS:1 COG:lin2299 KEGG:ns NR:ns ## COG: lin2299 COG0601 # Protein_GI_number: 16801363 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Listeria innocua # 1 305 1 305 309 331 54.0 1e-90 MAKYLLKRIFYMILTLFLVATIIFFLMKMMPGSPYANEAKMTATQKAIMNKQYGLDKPVI EQYIIYLAGAAHGDFGISFQYSNQPVSSLIGARLGASAQLGLQALVVGIILGIIIGSIAA MNQGTWIDSTATIVSIIGKSVPNFVLAVLLQYYIGLKLGWFPIAGWGEAAQTIMPTIALS VGPLAETARFVRTEMVDTLSSDYVELGKAKGLSRIEVIRKHTLRNSMIPLVTLIGPYAVA LMTGSMVIENIFNIPGIGEQFTKSILTNDYPTIMGVSMVYCFGLVVILLLTDIVYSLIDP RIRLTD >gi|300496863|gb|AEAT01000068.1| GENE 12 11251 - 12897 2391 548 aa, chain - ## HITS:1 COG:SA0849 KEGG:ns NR:ns ## COG: SA0849 COG4166 # Protein_GI_number: 15926579 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 48 539 40 530 551 296 38.0 8e-80 MSNFKKLLTATVAVSGAFLLAACSKTATKSAKPVSSSGYEKSINWMTTSELESLDPAKAD DTASEEQIANTYEGLYRLGENSKTVPGVATKSTTSKDGLTWTFYLRKDAKWSNGDPVTAE DFVYAWRRQVDPKTASSQVNNYEGIKNAIKISEGKKKPSSLGVKAEGKYKLVVTFEKKIP YFKVVTAISLKPLDSKAVKKYGKRYGTKSAYAVYNGPFKSVGWSGSNLTWKLAKNPYYWD KQAVKLETINYSVQKTPSTDYNLYQTGKLDAAILDTQAAKRMKGKKGYRVLTLGNTTYLC YNYKKKKIFRNANLRRAISMAINRKQLLSTIGTYNTQAKTFSATNVVLDGKNFAQEAESA NSSVNKYVEYDLKSARSYFKKALKELGVKKVSFTLMADDDDSYKKQTEFIQSALTEAFGG KMAVSVNNLPKTTRVSRQIANNFDVVLGGLTSDFPDPYHFLAYMQSGQTYNFGKWSNKEY DKAVKASLTMDKTKRRKALLKAEKILIDQEAISPLYHMGQAWMIRPNIKNLVFNGEYPDF KTTYAVKN >gi|300496863|gb|AEAT01000068.1| GENE 13 13126 - 13458 474 110 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0237 NR:ns ## KEGG: LDBND_0237 # Name: not_defined # Def: ABC oligopeptide transporter periplasmic component # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 110 1 110 110 171 96.0 1e-41 MNAQQSKQLKGTTGWTVRKFASTKYLQYNIAKDKYLANANLRKAISLSKTTGSTAVRWKA MVAAERALLEDQGVTPLYYTNEATLVKTSVKGVVFNGAGSPYNFKEAYIK >gi|300496863|gb|AEAT01000068.1| GENE 14 13455 - 13829 510 124 aa, chain - ## HITS:1 COG:SA0849 KEGG:ns NR:ns ## COG: SA0849 COG4166 # Protein_GI_number: 15926579 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 2 121 65 185 551 113 50.0 8e-26 MEGLIRLGNNAKPTPRIAKSWKESSDGKTWTFNLRKGAKWANGDEVTAQDFVYSWRRTVN PKTASEYAYLFSGIKNADAIVAGKKAANTLGIKADGKYKLTVTLDRRIPYFKLLMGFYIF SKPT >gi|300496863|gb|AEAT01000068.1| GENE 15 13817 - 14029 344 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|325684844|gb|EGD26992.1| ## NR: gi|325684844|gb|EGD26992.1| hypothetical protein HMPREF5505_1358 [Lactobacillus delbrueckii subsp. lactis DSM 20072] # 1 70 1 70 70 63 97.0 5e-09 MRKEKLFATGSVLLASAELLAACGSSSSKSSSSSKAQKLSWTEAAKLTTMDPSKATDRYD ADSSTMSWKV >gi|300496863|gb|AEAT01000068.1| GENE 16 14203 - 15831 2803 542 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 24 541 36 557 559 337 40.0 3e-92 MKLSKTLSLGATVLASAALLAACGSNRSSSSSSSKKTLTWMDSAEIPTMDLSKATDAASF NQISNTMEGLYRLGKNSKLEKGLATSEKVSKDGKTYTYTLRKSKWSDGSELTAKDFVYSW RRTVNPKTASQYSYLFSGIKNADAIVAGKKPVSSLGIKAVGKYKLVITLERRIPYFDKLM GFAVFFPQSEKAVTKYGSKYGTASKYMLYNGPFKHVGWTGSNLSWKMVKNPYYWDKKSVK LDTIKWTVQKTPSTAYNLYQSNKLDATALDSSQTKQLKNQKGYTELNQGATFYLQFNIAK NKYLANANVRKALSLAVNRKGLTTTLGGNNQPADTLTPTQLTNVNGEDYTKLIPSSAESL YPANPNKKEAVKYMNKGLKELGVSKLSFKILSDDTDAGNKTTEALQSNFESTFGDKVSVS AQNLPFKTRLSRSTAGNFDIVVSGWSADFADPISFLDLFTSTNSENNGKWKNATYDKLVA DSKTTASASKRWSDLSKAETILLKDAGISPLYYDTNVWMIRPSVKNVIQNRGTWNFKDAY IK >gi|300496863|gb|AEAT01000068.1| GENE 17 16061 - 17689 2616 542 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 24 541 36 557 559 357 43.0 5e-98 MKLSKILSVGATVLASAALLAACGSNSSKESSSSKKTLNWTVASEIPTMDMSKATDATSF NQLSNTMEGLYRLGKNSKLEKALATSEKVSKDGKTYTYTLRKSKWSDGSELTAKDFVYSW RRTVDPKTASQYSYLFSGIKNADAIVAGKKKPETLGIKAVGKYKLVITLERRIPYFDKLM GFAVFFPQSEKAVAKYGSKYGTASKYVLYNGPFKQVGWTGSNLSWKMVKNPYYWDKKNVK LDTITWSVQKTPSTAYNLYQSNKLDYTGLDASQTKQLKNQKGYVTLNQGATFYLQFNVAK NKYLANTNIRKALSLAVDRKGLTSSLGGNSVPANTLTPTQLTDVNGEDYTKRISKSAKSF YPASTNKKEAVKYMNKGLKELGVSKFSFKILSDDTDAGKKTTEFLQSTFESTFGNKVSVS VQNLPFKTRLSRSTAGNFDIVVSGWSADFADPISFLDLFTSTNPENKGKWKNTSYDKLIA DSKTTASTSKRWDDLTKAEDILLNNVGVAPLYYNTNAALIRPTVKDVYQNRGTWNFKDTY IK >gi|300496863|gb|AEAT01000068.1| GENE 18 17967 - 18428 513 153 aa, chain - ## HITS:1 COG:SA0849 KEGG:ns NR:ns ## COG: SA0849 COG4166 # Protein_GI_number: 15926579 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 151 375 526 551 103 36.0 1e-22 MGVSKFSFKILADDTDSGKKTAELLQSNIEATFSSKVSVTVQNLPFKTRLSRSTSGNFDL VISGWSADFADPISFLDLFTSTNSENNGKWKNATYDKLIADSKTTSSTSKRWSDLTKAEN ILLKDAGVAQLYYSTTASLIRPSVKGVIQNRGT >gi|300496863|gb|AEAT01000068.1| GENE 19 18496 - 19092 767 198 aa, chain - ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 172 158 332 549 140 43.0 2e-33 MGIKAVGKYKLVITLERRIPYFDKLMGFAVFFPQSEKAVKKYGSKYGTASKYMIYNGPFV QKGWTGSNLSWKMVKNKYYWDKKSVKLNTITWSVQKTPSTSYNLYQSGKLDYTSLDSSQT KQLKSTKGYTTLNQGATFYMQLNIAKNKYLANTNIRKAISLAVKRKGLVSSLGGNNVAAN TLTPPQRQGLHQAAFIIS >gi|300496863|gb|AEAT01000068.1| GENE 20 19136 - 19297 64 53 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|325684837|gb|EGD26985.1| ## NR: gi|325684837|gb|EGD26985.1| oligopeptide ABC superfamily ATP binding cassette transporter, binding protein [Lactobacillus delbrueckii subsp. lactis DSM 20072] # 1 53 1 53 53 75 96.0 1e-12 MKVSKFLGAGAAVTLSALMLAACGSSSSSSKSTRKALSWTVDGFPVFLPFLRD >gi|300496863|gb|AEAT01000068.1| GENE 21 19497 - 20147 800 216 aa, chain - ## HITS:1 COG:BH2835 KEGG:ns NR:ns ## COG: BH2835 COG1418 # Protein_GI_number: 15615398 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus halodurans # 9 214 13 212 215 139 38.0 4e-33 MERKLIADFVKENLAEERTGHDYYHGKRVAVLAERMLLADHPEAGQKSRDIAYTAGFVHD TIDEKVCPNPSEVLAKLREVFTAAGLSASDQDNVFFAIEHMSFSKNIDRHYRLSLEGEYV QDADRLESLGAMGIARAFVYSGKHDDKIYDPEIPPMELVSHDQYRNHEETTINHFYEKLF KLEGLMNSRAAQKEARRRTEYMRDFVREFRHEWDLY >gi|300496863|gb|AEAT01000068.1| GENE 22 20923 - 21096 96 57 aa, chain - ## HITS:1 COG:no KEGG:Tthe_2650 NR:ns ## KEGG: Tthe_2650 # Name: not_defined # Def: hypothetical protein # Organism: T.thermosaccharolyticum # Pathway: not_defined # 1 57 1 55 56 65 80.0 9e-10 MQDKTLVCKDCHKEFVFTEGEQEFYKEKGFDNEPQRCPECRKARKQERRNFNNRSYR Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:23:38 2011 Seq name: gi|300496841|gb|AEAT01000069.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00024, whole genome shotgun sequence Length of sequence - 22814 bp Number of predicted genes - 21, with homology - 21 Number of transcription units - 9, operones - 5 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 57 - 992 1285 ## COG0583 Transcriptional regulator + Term 1014 - 1064 5.7 - Term 1001 - 1048 3.6 2 2 Tu 1 . - CDS 1070 - 3931 3701 ## COG4485 Predicted membrane protein - Prom 3959 - 4018 6.2 - Term 4007 - 4042 5.1 3 3 Tu 1 . - CDS 4053 - 5306 1947 ## COG0457 FOG: TPR repeat - Prom 5355 - 5414 3.1 - Term 5366 - 5402 4.0 4 4 Op 1 3/0.000 - CDS 5423 - 5698 178 ## PROTEIN SUPPORTED gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 - Prom 5799 - 5858 3.9 - Term 5800 - 5834 -0.4 5 4 Op 2 3/0.000 - CDS 5902 - 7209 2264 ## COG1160 Predicted GTPases - Term 7236 - 7278 11.2 6 5 Op 1 21/0.000 - CDS 7286 - 8491 1966 ## PROTEIN SUPPORTED gi|116513917|ref|YP_812823.1| 30S ribosomal protein S1 - Prom 8519 - 8578 6.4 7 5 Op 2 . - CDS 8580 - 9257 217 ## PROTEIN SUPPORTED gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 8 5 Op 3 . - CDS 9310 - 9705 514 ## Ldb0849 hypothetical protein - Prom 9725 - 9784 4.4 - Term 9750 - 9790 5.9 9 6 Tu 1 . - CDS 9815 - 10519 1286 ## COG3601 Predicted membrane protein - Prom 10613 - 10672 2.9 - Term 10530 - 10568 4.0 10 7 Op 1 12/0.000 - CDS 10743 - 11462 1086 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 11 7 Op 2 21/0.000 - CDS 11462 - 12064 901 ## COG1386 Predicted transcriptional regulator containing the HTH domain 12 7 Op 3 . - CDS 12054 - 12788 1006 ## COG1354 Uncharacterized conserved protein 13 7 Op 4 . - CDS 12778 - 13131 619 ## LDBND_0766 RibT protein, riboflavin biosynthesis acetyltransferase (GNAT) family 14 7 Op 5 . - CDS 13142 - 14038 1289 ## COG4974 Site-specific recombinase XerD 15 7 Op 6 . - CDS 14031 - 14909 484 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains - Prom 15028 - 15087 7.7 + Prom 14993 - 15052 5.9 16 8 Op 1 . + CDS 15100 - 15522 658 ## LDBND_0763 acyltransferase 17 8 Op 2 . + CDS 15561 - 15770 117 ## LDBND_0762 ABC nitrate/sulfonate/bicarbonate transporter ATPase 18 8 Op 3 . + CDS 15790 - 16032 203 ## LBUL_0763 hypothetical protein + Term 16056 - 16086 1.1 - Term 16228 - 16284 13.5 19 9 Op 1 12/0.000 - CDS 16310 - 18079 2720 ## COG0469 Pyruvate kinase 20 9 Op 2 3/0.000 - CDS 18119 - 19078 1286 ## COG0205 6-phosphofructokinase - Prom 19121 - 19180 5.2 21 9 Op 3 . - CDS 19287 - 22766 3741 ## COG0587 DNA polymerase III, alpha subunit Predicted protein(s) >gi|300496841|gb|AEAT01000069.1| GENE 1 57 - 992 1285 311 aa, chain + ## HITS:1 COG:BH3925 KEGG:ns NR:ns ## COG: BH3925 COG0583 # Protein_GI_number: 15616487 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 7 245 6 229 289 74 26.0 3e-13 MKQDVLYQILTTAEDCQTVSDIAKKLFLSQPYVSQVLSKAEKKYNVVLLERRTLPIELTE AGRTLCDGLAKLHSDQMKIEQDLRRFTEEEQSYIKIGFSPIWAPGESRKIIPVLQKQFET TRFELIKTFSINSAKRLIDNRMVDIYLGPLLRGENLKNFFLFQPRIFLIIPETSKLYQEG KRDVPFSQQLLMDLSEEKMVSLSDDSGFQKAVDHLLEDQNLSVNKSIKVNDYEVALQMAV GGLGWTATLEYMLPDLDPDLKYNQVELPHTLIQSDNGLTIHMDSNDRAKEVAQVMTRLMK DDLVARKLIKE >gi|300496841|gb|AEAT01000069.1| GENE 2 1070 - 3931 3701 953 aa, chain - ## HITS:1 COG:L48341 KEGG:ns NR:ns ## COG: L48341 COG4485 # Protein_GI_number: 15672817 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 76 580 69 570 883 74 22.0 8e-13 MILQFSFNKKRDRAVYWKYSVFFLFLAACVFGPYLVTGHSLIWNTDTANQHLPLLVKYRE YVFSFLRHLSQGPAEWSWTMGLGSDLFSVFSYYTIGDVFAYLALLFPTSHLVFAYQLILL LRLYCVGLAFVYFARHFDFKDGVVLIGSGVYMVNAYLLYAALAQPMFTTTFILFPLIVVQ LERLLQGGSAWPLFGVFVWMLVSNYYLAFVLGLGAIVYLFLRWGLAYWKKIPFWPTINKL FFASLGAVLLSAGLLLPELLAVVNSTRTGSQFANGLTFYPAYYYSLLPKELIDGDNWKLM FWSALGLASIILPALVYLFRNWRKYRLVAASLLLGAVMLLIPAVGAVFNGGMSASNRWTL LLYLPFAFSVMVFVKAISEQAVSQKEMRLIFTTSGIYLVYLVAMSFLENDYKLFLPVIFL LLSLGASYLVNEGRALKRALLLTVAANLAFNALYAALPYNGNFAAKMLVRGEYEQIAEDR YGGLNYILPAGFYRVNTVSNNQFVSQKKLFNDLTSGLANVSSYYSIQNQYLGQFSTDLGN LQYDNNIPFHQLDDRTILNNFLGVRYIFNQKYSVNGSKVPGTYDLIAAGKEKKDQNQESV YQAELYKTTEAFPLLWLSYKAISPSRYQKLSASQKERSLASGVVVKWVGLKAAKLTGVKT IKASLVDASGKKLSKNKLTYTDSDASYKLKLHLSDREKAKLGKSELHVEISQISYQPFTL SQQLDLELKKAKQEADLAGQTFNERATRYKYWRYHLLAGSPDPSYKLTVTGKKASETIVQ RSQDMTSFYRLVDSAVMNMGTYQTLPNSLTFQPSKLGTYRFKIKVVAIPLNQEYTKEVRQ IQKQGVKQLKLAQNQLTGLFTSKKAGVVTSTIPYSNGWTATVDGKAVKVIKTNTAFVGFK MPAGKHRVRLVYRTPGLRSGLLISLLTALAILVYAAFSHKEWRREFRAKKKEK >gi|300496841|gb|AEAT01000069.1| GENE 3 4053 - 5306 1947 417 aa, chain - ## HITS:1 COG:lin2036 KEGG:ns NR:ns ## COG: lin2036 COG0457 # Protein_GI_number: 16801102 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Listeria innocua # 1 413 1 417 417 166 29.0 8e-41 MTYSEQLLDAIQGHRFSESRALLKQALENDDPEILASLAENLTDLGFTDLAKEVYRSLIA DFPNEDLFKVYLAEILLNDGAEDDGLTLLYNVPADSDAYLESLLVQADYYQSEGLIETAR AKMEQARQQAPDEDAITFGLAELDYMSDLNDQALPLYQDLRQRQTMFGEVNLNQRVFQTL AKLGRYEEAAAFINDHKEDLLDIDAKYQAGVIMEEAGQFDKAISFLDDVIKQSPDYVNAY PFLAKAYQEEDNPEEALFAAQTGLGYNELDEELYLTGAKAAAKLGKAEDAEDLLQRGLEV NPDNSSLRLLLSDLYLAQGRAEDSLALFTALADSDLEPQAHWNMARSYQEMEKYDQALQE YLLAYQSLQTSPAFLRGMISFAQESAHGDLARQLLEKYLKLVPDDQEMQDVYEQLRN >gi|300496841|gb|AEAT01000069.1| GENE 4 5423 - 5698 178 91 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] # 4 91 6 93 96 73 38 1e-12 MANKAELVSEVAAKTKLTKKDVSEAVDAVFEAIQEDLAKGEKVQLIGFGTFEVRDRAARK GRNPQTGAEIEIPASKVPAFKPGKALKDAVK >gi|300496841|gb|AEAT01000069.1| GENE 5 5902 - 7209 2264 435 aa, chain - ## HITS:1 COG:lin2051 KEGG:ns NR:ns ## COG: lin2051 COG1160 # Protein_GI_number: 16801117 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Listeria innocua # 1 435 1 436 436 531 60.0 1e-150 MPLPIVAIVGRPNVGKSTLFNRIINERVAIVEDRPGVTRDRNYARASWMGHQFSIIDTGG ITWEDSTIDEEIRAQAEIAIEEADVIVMLADASQGVTSLDERIAHLLYRADKPVLLAVNK ADNPEQRTDIYDFYSLGLGDPIPVSGSHGTGIGDLLDEVVKNFPADAEKTEEGVISFSVI GRPNVGKSSIVNRLLGEERVIVANEEGTTRDAIDTPFVKDGTKFRVVDTAGIRRRGKVYE KTEKYSVMRAMSAMERSDVAILVLDASTGIREQDKHVAGYAHEAGLGMIIAVNKWDLPKK DSSSGKDFEAVIREEFSYLDYAPIVFVSAKTGKNVDQLPKMVKEVYENKNQRIQSSVLND LLLEASRLVPAPMVKGKRLRVYYMTQVKTNPPTFVVFCNDPELMHFSYQRFLINQLRENF DFTGTPIKILPRKRK >gi|300496841|gb|AEAT01000069.1| GENE 6 7286 - 8491 1966 401 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116513917|ref|YP_812823.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] # 1 400 1 400 401 761 98 0.0 MSENNQFLDALAQMQEVKAGDIVDVNVLSVEDGQINVGVQGAGVEGVITRRDFTNDRSVN LRDEVKPGDTFKVYVVRRAGGDKENGEFFFSVTRVKEREAYDKLQKDFEEGKTIEGKVTS SVRGGLLVDVGTRGFLPASLISNRFVSDLKPYIGKAIKVKITEIDPAKNRLILSHKELIE EEREQAFENVASQLVVGDVVEGRVSRLTNFGSFVDIGGVDGLVHISEISYKHVDKPSDVL KVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATSSLNEGDVIEGEVKSLTNFGAFVE VADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSKRRISLSIKQADPENASS SNDRPRARRSSNNDAFARKYMNNDDNGFSLGDMIGDQLKNR >gi|300496841|gb|AEAT01000069.1| GENE 7 8580 - 9257 217 225 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Nichols] # 3 220 37 286 863 88 27 4e-17 MQVAIDGPASAGKSTVAKIVANKLSFVYIDTGAMYRACTFIARKHGLDYGDEAGILKAID EDGIVLEPGESGQKVLVAGEDVSLEIRTPEITANVSQVSALPGVRSKMVDLQRKLAGSTN VIMDGRDIGTTVLPEAEVKIFLVASARSRAERRLLDWQEKGIEAKQTVEEIEADIAKRDY LDSHREVSPLKKAADAIEIDSTNLTIDQVVAAILAEIAKKTNTSK >gi|300496841|gb|AEAT01000069.1| GENE 8 9310 - 9705 514 131 aa, chain - ## HITS:1 COG:no KEGG:Ldb0849 NR:ns ## KEGG: Ldb0849 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 131 1 131 131 169 95.0 5e-41 MDQNAQKPLSRLARQQAVREERKNKQAPWWTALLIAVMMALAAVPLITSQNSDYAVPQAK KEQAKPKPAVEKTSKAKPAPKVKTYVVKAGDSWAAIAQKYGISAEELAEQNGLDTSSTLA VGQKLKIKQAK >gi|300496841|gb|AEAT01000069.1| GENE 9 9815 - 10519 1286 234 aa, chain - ## HITS:1 COG:lin2059 KEGG:ns NR:ns ## COG: lin2059 COG3601 # Protein_GI_number: 16801125 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 11 220 5 182 203 73 31.0 3e-13 MEAANKRTDKSVSNWLAYAMIGAIAFVVMKFEFPIMPGVSFLKMDFSDVIVVITTFIFGI GGGVAVAAIKCLLSLIFAGFALPSLVGELAAFLASMAFALPFYFLAGSVKEEDRKSLKGY LLPALGLLLGVLSLTVVMALTNQFLLTPVYAYTSVPQAAGMHMSYAQLLTFTEQTYLGKM LHIPSMSSYIMGIIVPFNLIKGAINSVVVYILFESVLKTIKPFVIKHFSVSSKY >gi|300496841|gb|AEAT01000069.1| GENE 10 10743 - 11462 1086 239 aa, chain - ## HITS:1 COG:lin2063 KEGG:ns NR:ns ## COG: lin2063 COG1187 # Protein_GI_number: 16801129 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Listeria innocua # 4 236 2 234 244 261 60.0 9e-70 MAEERLQKVIAQAGIASRREAEKMILAGRVRVDGQVVTKLGTKVSSIEQVVVDNQPIERE SHHTYLFYKPRGVISAVKDNKGRKTVADYFTDLPYRLYPVGRLDYDTSGLLLMTNDGELA NLLMHPRNEVDKVYVAKIKGILQPDEIKALKKGVQIGRYKTKPAQVKVLKTNPRAQTQIV QLTIHEGHYHQVKEMFKAVNHLVDKLSRERYSFLDLQGLTSGQYRELNRKEVDRLKQVD >gi|300496841|gb|AEAT01000069.1| GENE 11 11462 - 12064 901 200 aa, chain - ## HITS:1 COG:SP1875 KEGG:ns NR:ns ## COG: SP1875 COG1386 # Protein_GI_number: 15901703 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Streptococcus pneumoniae TIGR4 # 3 192 2 187 189 145 44.0 5e-35 MTSKIAKLQALLYMAGDGGIKKEQLRDLLQLADPEIESLAKRLQEKLASDPDCGLQLLEI NDEYKLTTSGEVSDLVEAYFNKDLTKNISQSALEILAIVAYRQPITRIEIDEIRGVNSSG ALQTLVWRGLVKAQGVKDAPGHPKLYVTTDYFLQYFGYKSLADLPVIENFEDSSFDADGQ VDLFAENGTADEALQKMEDL >gi|300496841|gb|AEAT01000069.1| GENE 12 12054 - 12788 1006 244 aa, chain - ## HITS:1 COG:CAC2061 KEGG:ns NR:ns ## COG: CAC2061 COG1354 # Protein_GI_number: 15895331 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 6 239 3 244 249 127 35.0 2e-29 MMNEGMTIELPNFEGPLDLLLHLIRSQELDIYDIPIARITQQYLDYLQQMQRLNLQLAGE YFVMAATLLRIKSQYLLPKNDFVETEEEFADPREELVEQLVQYSVFKKISAYFKVRNDEV PVLAAKEPSVAVGAKVQPLPLGQISQQDLTASFILAMRRFKKRNDHAQVTLTGRPIQEMI AWLKEVLEQQGRVSFFALTDQVESLADLVGLFLAILELAKDQYLKVRQKRRFGDLEIERS KHDE >gi|300496841|gb|AEAT01000069.1| GENE 13 12778 - 13131 619 117 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0766 NR:ns ## KEGG: LDBND_0766 # Name: not_defined # Def: RibT protein, riboflavin biosynthesis acetyltransferase (GNAT) family # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 117 1 117 117 218 99.0 5e-56 MLVPYKKDYEKVAMGLLSYLPDFKNLQNLKEEMQLYAEDPAHQLYLYRDEDQNIVGLAGC ETGAGCLVLRYLSLAPGFRDDEHFSEIMRELAQEAGKQKVMTVPEYTYLMKYLNNDE >gi|300496841|gb|AEAT01000069.1| GENE 14 13142 - 14038 1289 298 aa, chain - ## HITS:1 COG:BS_ripX KEGG:ns NR:ns ## COG: BS_ripX COG4974 # Protein_GI_number: 16079408 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 4 297 1 295 296 258 45.0 1e-68 MNKLAEQINDYLRYSQIERGLSPNTIAAYKQDLLEFLAFVKEEQMPAWPLEAVEIDAFLA KERDLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGK LLEQPDLTTDLGIRDRALVELLYATGMRVSEAVNLQLADVHADLQLIKVLGKGSKERLIP VSALALDWIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKD VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI >gi|300496841|gb|AEAT01000069.1| GENE 15 14031 - 14909 484 292 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 1 276 1 272 285 191 39 5e-48 MLGEIRTGKITDSNAEAYFVQIDGLTFKLKKEEITQEETPEIGGQITGFIYDNQKHEREM TQFLPFAQADQYGWATVTRVQRGLGVFLDVGLPDKDIVMSLDDLPLDPARWPQKDDRLLV RLETDDKDRIWAKAADENVFDQIAVRFPNNLVNKNLLARVYSSKSLGCFVLTNDYYLGFI HESQMQQPLRLGEEVKARVIGVSQYGRLNMSVLPRSFEEIDDDAAMIMMSLRRKGDKTLP FSDKSEAQAIKDYFGISKSAFKRALGNLIKRGLVSQDKEAGTIKLIKDEADE >gi|300496841|gb|AEAT01000069.1| GENE 16 15100 - 15522 658 140 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0763 NR:ns ## KEGG: LDBND_0763 # Name: not_defined # Def: acyltransferase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 140 1 140 140 240 95.0 1e-62 MTKKKHLYEVDLMRCFFMFGIVLNHVASTFAAALGNKATPAGRFSVSTHLILHFPRFGFM FITGLVLFLGYWGRPKKQNWLVFWKKRYIGSGIPYLFWNGLFLAFLLLTSGSFSWNKWLT GWLEAISKGNQFYFSPPSCA >gi|300496841|gb|AEAT01000069.1| GENE 17 15561 - 15770 117 69 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0762 NR:ns ## KEGG: LDBND_0762 # Name: not_defined # Def: ABC nitrate/sulfonate/bicarbonate transporter ATPase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 51 1 74 124 62 55.0 9e-09 MNGQKLSGLNQQARVMFQDDRLLARVGLEEYADAYPATLSGGAKTKSCFSQSPPVLSPAP AFGQPPRSP >gi|300496841|gb|AEAT01000069.1| GENE 18 15790 - 16032 203 80 aa, chain + ## HITS:1 COG:no KEGG:LBUL_0763 NR:ns ## KEGG: LBUL_0763 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 17 80 1 64 64 80 95.0 2e-14 MQELILQVCKEEGITTVLVTHDVREATIMANKIWVIKNQGIAAEMINDFRDQDDDQAQLA KDKIFHDTLQIILGEDDLAA >gi|300496841|gb|AEAT01000069.1| GENE 19 16310 - 18079 2720 589 aa, chain - ## HITS:1 COG:lin1605_1 KEGG:ns NR:ns ## COG: lin1605_1 COG0469 # Protein_GI_number: 16800673 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Listeria innocua # 1 479 1 475 475 529 59.0 1e-150 MKKTKIVSTLGPASNDIETITKLAEAGANVFRFNFSHGDHEEHLARMNMVREVEKKTGKL LGIALDTKGAEIRTTDQEGGKFTINTGDEIRVSMDATKAGNKDMIHVTYPGLFDDTHVGG TVLIDDGAVGLTIKAKDEEKRELVCEAQNTGVIGSKKGVNAPGVEIRLPGITEKDTDDIR FGLKHGINFIFASFVRKAQDILDIRALCEEANASYVKIFPKIESQEGIDNIDEILQVSDG LMVARGDMGVEIPFINVPFVQKTLIKKCNALGKPVITATQMLDSMQENPRPTRAEVTDVA NAVLDGTDATMLSGESANGLYPVQSVQAMHDINVRTEKEMDTRNTLALQRFEEYKGSNVT EAIGESVVRTAQELGVKTIITATSSGYSARMISKYRPDATIVALTFDEKIQHSLGIVWGV EPVLAKQPSNTDEMFEEAARVAKEHGFVKDGDLVIIVAGVPFGQSGTTNLMKLQIIGNQL AQGLGVGTGSVIGKAVVANSAEEANAKVHEGDILVAKTTDKDYMPAIKKASGMIVEASGL TSHAAVVGVSLGIPVVVGAADATSKIADGSTLTVDARRGAIYQGEVSNL >gi|300496841|gb|AEAT01000069.1| GENE 20 18119 - 19078 1286 319 aa, chain - ## HITS:1 COG:lin1606 KEGG:ns NR:ns ## COG: lin1606 COG0205 # Protein_GI_number: 16800674 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Listeria innocua # 1 318 1 318 319 373 60.0 1e-103 MKRIGILTSGGDAPGMNAAVRAVTRVAIANGLEVFGIRYGFAGLVAGDIFPLESEDVAHL INVSGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRHGFNSI GLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASSHHRVFIVNVMGRNCGDIAMRV GVACGADAIVIPERPYDVEEIANRLKQAQESGKDHGLVVVAEGVMTADQFMAELKKYGDF DVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHLLLEGKGGLAVGIENGKVTSHDILDLF DESHKGDYDLLKLNADLSR >gi|300496841|gb|AEAT01000069.1| GENE 21 19287 - 22766 3741 1159 aa, chain - ## HITS:1 COG:lin1609 KEGG:ns NR:ns ## COG: lin1609 COG0587 # Protein_GI_number: 16800677 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Listeria innocua # 1 1087 6 1101 1108 528 33.0 1e-149 MQTISANTILASPMKTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLGL QGRFKGVELEEAEYDLVFLAQSQKGYQSLMRLSSFLNIASGDLAGPAPSLSDLPELSDLT VIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPKGLPLYLGVYPAESAAAYDAYVKKLAE ISALPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAEGQGSHWLRPAPVLED ACREMGLEEALANSGKIAASCHAKIPFKEPQLPVFPQATGLSSDQYLEKLAFAGLEKLGL RQGIYHARLQKELAVIQQMGFADYFLIVGDIVNYCRQRGALVGPGRGSAAGSLVAYALGI TQIDPLKYDLLFERFLNPARADMPDIDLDFTTSGRKLAFAYVQEKYGAKARFGEGSDLVA RILALTTMKAKSVLERTGQVFGLTLPAIARLKQAMGAAKTLAEAGQQTEFKALVAASPLT RLLYQTAARLEGLPEDTGTHAPGLVISEEPLSRQIGLMTGKEAPLWTVEQTKKYVEKYGL LKIDFLTLDNLELLEGVLAEIQKSSGPLDLTRLPLDDPDTLRLFARGETQQIFQFNSSGM QEVLRKIQPRTFDDLSVAVALYRPGPIASIPLYVARKNGTSPVQYPDPSLKEVLGPTYGI FVYQEQVMQTARIFAGFSLAEADVFRNAISKKQAGLLAEEKGKFVAGAVRKGHSRQAAEA VYALIEPFANYGFNHSHAVAYALLAYWQAFLSVHFPREFYLEKLRASRGKEKGAIIRQAR KAGVEILGPDINLSQAEARLFEGRIYLGLKDIMGITPAFLDQLLALKRPVTSFPAFLRQL DTKELKEKQLVPLIEAGLFDQVSPNRASLLVNCGNMLNTARLSQKSLVLQDFLAAKEENV PMPTPAEKVAMEERAMGFAVTASPLEIAGKALAKRYGAKPFAGLALNETGQVLAQFIKKN DWRVKRGARAGELGSNAVFSDGQTSEKVTIFTSQYRRFAQILKENAVYLLQVDKKEDQKD SRGYQLILQDLRLLDLKQLEQAEEVKPVTVKPKDLALERYFDQHYRTKRLGDFQVKERGQ ALAKLLAVRYQEDKRGRKMATLILADSSGRYRCWLFAGELAKLTLNLQVNDYYLLKLEAL GQRESLDFKIWDMKQVNLR Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:23:54 2011 Seq name: gi|300496840|gb|AEAT01000070.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00093, whole genome shotgun sequence Length of sequence - 1098 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - SSU_RRNA 95 - 1098 99.0 # CR954253 [R:1470602..1472162] # 16S ribosomal RNA # Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:24:02 2011 Seq name: gi|300496815|gb|AEAT01000071.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00009, whole genome shotgun sequence Length of sequence - 25221 bp Number of predicted genes - 23, with homology - 23 Number of transcription units - 11, operones - 3 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 66 - 108 6.2 1 1 Tu 1 . - CDS 130 - 987 1447 ## COG1806 Uncharacterized protein conserved in bacteria - Prom 1028 - 1087 3.6 + Prom 1051 - 1110 7.2 2 2 Tu 1 . + CDS 1156 - 1332 292 ## PROTEIN SUPPORTED gi|58337487|ref|YP_194072.1| 30S ribosomal protein S21 + Term 1339 - 1376 5.5 + Prom 1360 - 1419 3.4 3 3 Op 1 17/0.000 + CDS 1486 - 2433 1245 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 4 3 Op 2 1/0.333 + CDS 2433 - 2957 929 ## COG0319 Predicted metal-dependent hydrolase 5 3 Op 3 6/0.000 + CDS 2959 - 3378 478 ## COG0295 Cytidine deaminase 6 3 Op 4 16/0.000 + CDS 3362 - 4267 1401 ## COG1159 GTPase 7 3 Op 5 3/0.000 + CDS 4267 - 5016 1101 ## COG1381 Recombinational DNA repair protein (RecF pathway) + Term 5225 - 5262 3.2 + Prom 5021 - 5080 4.6 8 3 Op 6 19/0.000 + CDS 5282 - 6193 1218 ## COG0752 Glycyl-tRNA synthetase, alpha subunit 9 3 Op 7 . + CDS 6186 - 8252 3132 ## COG0751 Glycyl-tRNA synthetase, beta subunit 10 3 Op 8 31/0.000 + CDS 8284 - 10122 1856 ## COG0358 DNA primase (bacterial type) 11 3 Op 9 1/0.333 + CDS 10094 - 11212 1401 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 12 3 Op 10 1/0.333 + CDS 11254 - 12375 1433 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 13 3 Op 11 . + CDS 12411 - 13547 1602 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) + Term 13551 - 13601 9.9 + Prom 13572 - 13631 4.2 14 4 Tu 1 . + CDS 13790 - 14035 150 ## gi|300812185|ref|ZP_07092627.1| conserved domain protein + Prom 14080 - 14139 2.2 15 5 Tu 1 . + CDS 14208 - 14450 142 ## gi|300812198|ref|ZP_07092640.1| hypothetical protein HMPREF9264_0087 + Term 14560 - 14596 0.6 + Prom 14581 - 14640 4.2 16 6 Tu 1 . + CDS 14661 - 15986 913 ## COG0675 Transposase and inactivated derivatives - Term 16599 - 16640 4.2 17 7 Tu 1 . - CDS 16690 - 18135 2233 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Prom 18641 - 18700 2.3 18 8 Op 1 . + CDS 18776 - 18958 250 ## LBA0877 cellobiose-specific PTS IIA (EC:2.7.1.69) 19 8 Op 2 . + CDS 19004 - 19201 194 ## LDBND_1129 hypothetical protein + Term 19218 - 19270 2.1 + Prom 19214 - 19273 7.2 20 9 Tu 1 . + CDS 19354 - 19680 532 ## COG0393 Uncharacterized conserved protein + Term 19697 - 19738 8.0 - Term 19509 - 19546 0.2 21 10 Tu 1 . - CDS 19709 - 20548 849 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 20625 - 20684 6.4 + Prom 20584 - 20643 3.5 22 11 Op 1 . + CDS 20806 - 22728 2566 ## COG2211 Na+/melibiose symporter and related transporters 23 11 Op 2 . + CDS 22803 - 25007 2914 ## COG3345 Alpha-galactosidase + Term 25055 - 25094 5.2 Predicted protein(s) >gi|300496815|gb|AEAT01000071.1| GENE 1 130 - 987 1447 285 aa, chain - ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 21 276 10 264 270 202 42.0 4e-52 MTENKAENKQTEKTEKMEVNIIIISDSAGETAFNNAQAAAVQFPDAEVNYRRYPFMVNEK KLAATLEEIEQYPNLVIVYSMLDEKLQLPIIKFAREHKARYIDILSPIIEAISQTTHMKP TGLVGANHQLTNKYFNRISAMEFAVMYDDGKDPRGFLEADVVLLGVSRTSKTPLSLLLAN KGLKVANLPLVPQTHIPKEIYQIDPKKIIGLTTDPQVLNRIRRQRMISYGMDPDTAYSNM DSINAELDSAMALYKKLGCFVINVAERSIEETAALIINHLGYEED >gi|300496815|gb|AEAT01000071.1| GENE 2 1156 - 1332 292 58 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58337487|ref|YP_194072.1| 30S ribosomal protein S21 [Lactobacillus acidophilus NCFM] # 1 58 1 58 58 117 100 1e-25 MAKTIVHENESIDDALRRFKRSVSRSGTLQEYRKREFYEKPSVRRKLKSEAARKRRHY >gi|300496815|gb|AEAT01000071.1| GENE 3 1486 - 2433 1245 315 aa, chain + ## HITS:1 COG:lin1504 KEGG:ns NR:ns ## COG: lin1504 COG1702 # Protein_GI_number: 16800572 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Listeria innocua # 12 311 16 315 319 357 60.0 2e-98 MEKKFLPHSSENVQKLVGVNDSNLKLIEEGYEVIVTDLGGQIKVAGPEEQVETVLRVLKA LDGVASNGINLTPADVVSAMKMADRGTTEYFGDLYKQILIRDAKGRPVRVKNMTQKSYVE AINKSDVVFGIGPAGTGKTFLAVVCAVAAFKRGEVSKIILTRPAVEAGESLGFLPGDLKE KVDPYLRPIYDSLYAILGQGPTDRLMERGVIEIAPLAYMRGRTLEEAFVILDEAQNTTDA QMKMFLTRLGFNSKMVVNGDMTQIDLPGKAHSGLITARNILQGIDQIEFVEFSAADVVRH PVVAKIIKAYEEEGK >gi|300496815|gb|AEAT01000071.1| GENE 4 2433 - 2957 929 174 aa, chain + ## HITS:1 COG:SA1399 KEGG:ns NR:ns ## COG: SA1399 COG0319 # Protein_GI_number: 15927150 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Staphylococcus aureus N315 # 6 161 4 152 155 110 41.0 1e-24 MQGIDVSYSDEVGFLTKGDRDWEDWIMQLLLMAKKEIGKDNAQEMSINFVDEDRSQAINR DYRDKDRPTDVISFAIEDGDDGLDLAMFTQDPDFTEDIGDLFMCPSVIERHSKEYGTGFD REFGYTIVHGYLHLNGYDHIEPDEAKEMFGIQGKILEEYGLPLYPDQLDEGRGK >gi|300496815|gb|AEAT01000071.1| GENE 5 2959 - 3378 478 139 aa, chain + ## HITS:1 COG:lin1500 KEGG:ns NR:ns ## COG: lin1500 COG0295 # Protein_GI_number: 16800568 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Listeria innocua # 5 133 3 130 131 129 51.0 2e-30 MNELEEKLFLLAKDHLADAYSPYSHFHVASALVTDAGEIFTGVNIENSAFGLTNCAERTA IFSWVNAGRPGKIKSLLIIGNTDRPISPCGACRQVMSEFMAPETEVILTDSQGDYERFTV EQLIPYHFTEKDIQDGANK >gi|300496815|gb|AEAT01000071.1| GENE 6 3362 - 4267 1401 301 aa, chain + ## HITS:1 COG:SA1396 KEGG:ns NR:ns ## COG: SA1396 COG1159 # Protein_GI_number: 15927147 # Func_class: R General function prediction only # Function: GTPase # Organism: Staphylococcus aureus N315 # 5 296 2 294 299 325 53.0 5e-89 MGQTSKHKSGFVALVGRPNVGKSTLMNRLIGQKVAITSAKPQTTRNKISGIYTEDDMQVV FVDTPGIFKSHSDLDEYMDKASLSSLKDVDLVMFMVDAKEAGKGEEYVAGLLKDLDIPVF LVINKIDQVHPNDLLPIIDSYQAVGKFAEFLPISARQGNGVDDLLKTLKDYLPEGPQYYA SDEVTDRPEYFVVAEMIREQILRLTDQEVPHSTAVWVDQMNQRINGKLQIDATIFVEKDG QKRIIIGQRGSMIKQIGMRSRKEIENLLGEKVNLKLWVKVRRDWRQDPAFLKSIGYDKKE L >gi|300496815|gb|AEAT01000071.1| GENE 7 4267 - 5016 1101 249 aa, chain + ## HITS:1 COG:lin1497 KEGG:ns NR:ns ## COG: lin1497 COG1381 # Protein_GI_number: 16800565 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Listeria innocua # 10 246 6 242 255 132 29.0 5e-31 MAADLLDVHGLLFKRQQYKEADLLAKLWTKELGIVTVIAKGGMRPKSQLAAAVLPFTEGT FGILTRYKGISQLRTYKKLSQHDELFTDLDKNAYLSYLFDLADHAFSEYQKLGGYYDLLL VAFNRIVAGQDPEIIAQIVQLQLLDAFGVAPQLGACVICGKEKGIFDYSIAAGGVVCSDH FRSVSRLHLSPKATALIRTLALLPISRLGEIQIGEDLKKESRRAIAQIYQATVDLHLPSL RFLNEVRGS >gi|300496815|gb|AEAT01000071.1| GENE 8 5282 - 6193 1218 303 aa, chain + ## HITS:1 COG:BH1370 KEGG:ns NR:ns ## COG: BH1370 COG0752 # Protein_GI_number: 15613933 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Bacillus halodurans # 5 301 1 297 297 447 67.0 1e-125 MTQKLDIQTMIFKLEQFWASKGCMIMPSYDENKGAGTMSPYTFLRAVGPEPWKACYVEPS RRPADGRYGDNPNRLFQHHQFQVVLKPAPLEIQQYYLDSLKVLGIEPLEHDIRFVEDNWE NPSMGCAGVGWEVWLDGMEVSQFTYFQTVGELDVKPTMGEITYGVERLASYIQDVNSVFD LEWGDGVLYRDIFKEPEYEHSKYAFEESDQKQLLEFFDTYERIAKRLLGQNLVHPAYDYI LKCSHTFNLLDARGAVSVTERAGYLHRIRNMAHEVAVKFVEEREKRGFPLLKSAQAKAEA SND >gi|300496815|gb|AEAT01000071.1| GENE 9 6186 - 8252 3132 688 aa, chain + ## HITS:1 COG:lin1495 KEGG:ns NR:ns ## COG: lin1495 COG0751 # Protein_GI_number: 16800563 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Listeria innocua # 1 688 1 688 688 627 45.0 1e-179 MTKDFLFEIGVEEMPAHVVSKSVKQLADRTGKFLKENGLGFKEIKTYSTPRRLTVLVKEL DEKQADVDEVKKGPAKKIAQDADGNWTKAAVGFARGQGMSADDIYFEELKGVEYAYVHVQ KAGKEAKEILLGLDEVIKSMTFPTKMRWDSQDFEFVRPIHWLVALYGSEVVPVEFLDITA GRKTAGHRFLGDSVVLANADDYVEALRDQYVIVDADERKAMIVSQINDLVNSHNWQIKLD ASLLEEVNNLVEYPTVFAGSFDQKYLEIPDEVLITSMKDNQRYFEVYDQEGKLINYFISV RNGNKDHLENVISGNEKVLVARLDDAVFFYDEDRKYPLSHFVDRMDSVSFHDKIGSMAEK MTRVRIIGDYLAKRFGLSAEEVADFDRVSGLYKFDLVTQMVGEFAELQGVMGMHYARLAG ENENVSVAIKEHYMPTTAEGDLPKTKVGALLSVADKLDTIIAFFGAGMIPSSSNDPYALR RYAYGIVRILLNEDWSLPFDQVVPEIVELLSGKTPAKLPQEAEEDKQLADFIRDRIKQFL QKNNYLYDVIDAVLASSEQDPSQILAAAKVLQQHHDDEAFKPVVESLTRIANILKKAKFS QASPVDPSLFEDRSEQDLYNGVEALANVKDHAELYEAFVALQGVIDRYFDVNMIMAKDEA VKNNRLSQLAAVNDLAKRLGDLSKLVIK >gi|300496815|gb|AEAT01000071.1| GENE 10 8284 - 10122 1856 612 aa, chain + ## HITS:1 COG:lin1492 KEGG:ns NR:ns ## COG: lin1492 COG0358 # Protein_GI_number: 16800560 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Listeria innocua # 3 595 2 616 626 363 35.0 1e-100 MAGRISEDFINEVRGSVNIVDVISQYVSLEKRGKDYVGLCPFHQEKTPSFSVNPDKQFFY CFGCHKGGNVYKFIMEKEEVTFPESVERVAEFANIPMPQEYQEQPVKLNPLMQMHKEAAD FYQQVLMTTKIGERGLEYARKRGLDDDLLRHFKIGYAPGKSDLLLTYLRGEGYTDDQLAE SGLFVKSQDGRLFDRFRDRLMFPMSDESGHPVAFSGRRISDDPEEPKYLNSPETSIFNKS DLLFHFSEAKKHARKEGHLVLFEGHMDVISAYKAGVKTGIASMGTSLTQQQVYMIRRITK QVVINYDGDDPGQHATERAVGLFKQAGNFDLGIVILPDKLDPDEYVKQYGPDSYQAAIRG AISTTDFFLQRLKKKYNLNNEREQVAYLSEAVAEIAALPNPVEQDLYVGRLAKETGVSLD ALKVNLSRARRKQRRVDQHTSSEVLPELAPLAPAADPQPVTRALKAQQRLLYAYIYSDEA RDYLTVNGFVFPNPEYERLAKLWLNYIETHENVSLSGFLDFIPEELQSIIVSTDMTGLPG EITLEELEAQVRVLNLCKIDDEIDRHMQAIADARRRNDQTAILLETQAILQLRQLKLQEE EAVSDRRKANQG >gi|300496815|gb|AEAT01000071.1| GENE 11 10094 - 11212 1401 372 aa, chain + ## HITS:1 COG:lin1491 KEGG:ns NR:ns ## COG: lin1491 COG0568 # Protein_GI_number: 16800559 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Listeria innocua # 11 372 13 374 374 442 70.0 1e-124 MTEEKQTKANEMSLEKAVKLVVEGVKASHQITEAAFEDRLIKPYKLEGKAVDQLVQEFED NGISIVDEGGKPSKLALTKQKNVEKAELNNMDAPTGMKMNDPVRMYLKEIGRVNLLTSEE EVALAKRIEAGDEEAKQELAEANLRLVVSIAKRYVGRGMNFLDLIQEGNMGLMKAVDKFD YRLGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEP EEIGAEMDLPVKKVREILKICQEPVSLETPIGEEDDSNLGDFIEDKDAMSPEQHAANEML KEQLAEVLDTLSDREEEVLRLRFGLDDGKARTLEEVGQHFEVTRERIRQIEAKALRKLRH PSRSSQLRDFLD >gi|300496815|gb|AEAT01000071.1| GENE 12 11254 - 12375 1433 373 aa, chain + ## HITS:1 COG:lin1491 KEGG:ns NR:ns ## COG: lin1491 COG0568 # Protein_GI_number: 16800559 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Listeria innocua # 1 373 1 374 374 444 68.0 1e-124 MTDKAKQTGKADQVSLAKAVKLVVKDVKKSKQISEKEFTDRLLKPYQIEGRAVDQLVQEF EDNGISIVDDKGEPSKLALAKQKNVEKAELEHLSAPGSRMNDPVRQYLKRIGRVSLLSGD EEVQLAKRIEAGDQEAKDELTSANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKF DYQLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPE PEEIAAEMDLPVKKVREVLKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAASEM LKDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLR HPSRSNQLRDFLE >gi|300496815|gb|AEAT01000071.1| GENE 13 12411 - 13547 1602 378 aa, chain + ## HITS:1 COG:L0139 KEGG:ns NR:ns ## COG: L0139 COG0568 # Protein_GI_number: 15672535 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Lactococcus lactis # 3 366 74 436 447 313 53.0 3e-85 MAKENASNVNDFPLEKAVKMVITGLKKTKQIREKDLKARLLLPYGLNDAETAKLVEEFAD NGISIVDDQGEPSALALKAEEEAEKKEQKELVASSDNDRVYDSVRMYLKEIGKVPLLSRD EEVEVAKRIENGDESAKDELAAANLRLVVSIAKRYAKHNGKMGILDLIQEGNIGLMKAVD KFDYSKGFKFSTYATWWIRQAITRALADQDRMIRIPVHVVESINKMNRIQRTLQQDLDRD AKPEELAAEMNEPLQKVQEIITVAKNQETDSLDKPVGEEGDSQLGDLLEDNKAINPEEYT ASEMLKDQLSIMMGEFLTDREAKVLKLRFGLENDEPHTLEEVGRSLGVTRERVRQIEAKA VKKLKHHSDLLQDYFSAE >gi|300496815|gb|AEAT01000071.1| GENE 14 13790 - 14035 150 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300812185|ref|ZP_07092627.1| ## NR: gi|300812185|ref|ZP_07092627.1| conserved domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] conserved domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 1 81 1 81 81 145 100.0 9e-34 MKLFERSSRRVRLTREGEYLLPYAQRLLADSRQFDQAAAACRQEQTKILDLYAIPTMTNY DFFKAVNRLYGPTSGDRPAFS >gi|300496815|gb|AEAT01000071.1| GENE 15 14208 - 14450 142 80 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300812198|ref|ZP_07092640.1| ## NR: gi|300812198|ref|ZP_07092640.1| hypothetical protein HMPREF9264_0087 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] hypothetical protein HMPREF9264_0087 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 1 80 1 80 80 141 100.0 2e-32 MADLAGARFLTLGERTYFEKKIVAACQKAGYEPNFVYQGERIEAILEMVRQQLGIALLMK KSVSDSQLAGLKRLDLAESY >gi|300496815|gb|AEAT01000071.1| GENE 16 14661 - 15986 913 441 aa, chain + ## HITS:1 COG:TM1044 KEGG:ns NR:ns ## COG: TM1044 COG0675 # Protein_GI_number: 15643802 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Thermotoga maritima # 5 428 6 369 405 139 29.0 1e-32 MAIKRTHVYRLYPDATMAHVLDQWCDYRRYCYNKALELWNTTYSEYRMLVSPEILAEFKK PKEEQQFTEEQKLFISRYYPTAALIQKKLTASKQSWERQISSRILQQACADLGKSFKKFA KDKALKVKNGAGHPVFQSKKAKRQGFKLNQGVALAKEGNHGKLTLPVPAPYKGEWHSIRF SEVPKNAKFGTVSFYREHGHYYMAVPYKYETPPYIHKHTGKKTGIDVNVSHFNDAEGEHY FLHKGNNGAANLGRVYENIKHQQRILARKLEENGQIAGKRSKSYQKARTKLQKLYERAHR MQDDAMHKYTTHLVREYDAICIEDLDVKGMLMSHVASKGVHRALFGRFRSYLEYKCKSAG VKLVIANRFYPSTQRCAVCGNIKKNDEKITLSGNKKHGTKHNEYVCYNKKCPNYNKVVDR DMNAMMNLTFLIDHPRYNKAL >gi|300496815|gb|AEAT01000071.1| GENE 17 16690 - 18135 2233 481 aa, chain - ## HITS:1 COG:SP0303 KEGG:ns NR:ns ## COG: SP0303 COG2723 # Protein_GI_number: 15900236 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 8 481 6 478 478 592 63.0 1e-169 MYSAKMPEGFLWGGAVAAHQLEGAWDVGGKGVSVADVMTVGSATKPREITDGVLPGKNYP NHSAIDFYHHYKEDIKLLAGMGFKAFRTSIAWTRIFPNGDDAEPNEAGLKFYDDLFDEMH KYGIKPVITLSHFEMPFNLAKNYGGFTNRKTIDFFVRFAEVCFKRYKDKVKYWMTFNEID NQSAFNNDFLMATNSGILFKEGMTDEEKEAAMYQAAHYEFVASALAVKIGHKINPDFKIG LMINYSPVRPLTPSSEDTLLADKFEQHRDFFSDVQVFGEYPKAIEAYIEKHGYRPDITDE DKVVLKEGTVDYVAFSYYQSTTVSSEKVSADELSDLEKAVAVNSTLERSDWGWEIDPVGL RLALNHLTDRYHLPLFIVENGLGAYDEVEDGKIHDPYRVDYLKKHISEMEKAVAIDGVDL MGYLPWGPIDLVSAGTGQMDKRYGFIYVNKNDQGVGDLSRTPKYSYYWYKKVIASNGTDL D >gi|300496815|gb|AEAT01000071.1| GENE 18 18776 - 18958 250 60 aa, chain + ## HITS:1 COG:no KEGG:LBA0877 NR:ns ## KEGG: LBA0877 # Name: not_defined # Def: cellobiose-specific PTS IIA (EC:2.7.1.69) # Organism: L.acidophilus # Pathway: Phosphotransferase system (PTS) [PATH:lac02060] # 1 60 17 76 123 79 83.0 4e-14 MAAMGLIANGGDAKSLAFEAIRLAKVGKIKEAREKLAEADKSLLDAHNSQTDMLTKEAQG >gi|300496815|gb|AEAT01000071.1| GENE 19 19004 - 19201 194 65 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1129 NR:ns ## KEGG: LDBND_1129 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 65 1 69 73 110 89.0 2e-23 MNAITFRDLAGEMVDLYEKLYASGSLKTESWRGAVVAIVAFLIWYPFMKRFDLKTYKKEQ EEAKR >gi|300496815|gb|AEAT01000071.1| GENE 20 19354 - 19680 532 108 aa, chain + ## HITS:1 COG:TVN0673 KEGG:ns NR:ns ## COG: TVN0673 COG0393 # Protein_GI_number: 13541504 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermoplasma volcanium # 2 108 4 111 122 87 44.0 4e-18 MENKMLVVTTENIPGRKYEVIGEVFGVTTQSKNFASVFGAGLKSMIGGEIKAFTKMLTTS REVALDRLREEAGKLDADAVVMMRFDSGSIAGDMQSVVAYGTAVKFVD >gi|300496815|gb|AEAT01000071.1| GENE 21 19709 - 20548 849 279 aa, chain - ## HITS:1 COG:SP1899 KEGG:ns NR:ns ## COG: SP1899 COG2207 # Protein_GI_number: 15901726 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Streptococcus pneumoniae TIGR4 # 5 273 4 273 286 137 29.0 2e-32 MTVEYRQLKKQNIDSNILFYGQESCTPGYFYRGNNVRSNYVIHYILSGRGTFAPAGQAPV SLQAGDLFILPKGVACFYQADFDDPWSYFWVGMSGMQIGKILQNSKLSDKFYLRQVQDSG FYKSLCQLFHALHLRESLASNMLTESLLYQTFYQLLVDYPTGKRQQSGLADDYFIAAMTF LEDNFGDPACSVSELCQHLGLSRSYVYNLFKNKTDLSPQQFLTKLRMERAKELLSNSNLN VQAISHFVGYNDSFTFSKAFKRYQGLSPKSWRQIKNAGN >gi|300496815|gb|AEAT01000071.1| GENE 22 20806 - 22728 2566 640 aa, chain + ## HITS:1 COG:STM4299 KEGG:ns NR:ns ## COG: STM4299 COG2211 # Protein_GI_number: 16767549 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 9 448 3 429 476 158 26.0 3e-38 MNEDSNKKLTVRERLAYSFGALGNDAFYGLMSGWLVVFITSHLFNTGDKATDAKMVSIVT ILMAVIRIIELFIDPFIGNAIDKTKTKWGHFRPWIVAGGSVSAIFLLILFSTMGDLYKKS PVGYIIVFAILYIVMQLFYAFKDTGFWSMMPSLTLDSRDREKTATWARVGSTLGGGLLGI LVMPAVIAFSATKTTNGDTRGWFIFAAIVCTIAFLSAWAVGLNNREVTSDIRKNTEDTSL KGVFKILSGNDQLLSVAIAYLCYGIAVNVTGSLEIYYFTYISGQAQAFSIMSTINVIMGV IASAVFAPISKKYSRKAMFVTALCLMLVGLGIFAIAGKSVPLAILACVVFGMPQQLVFLV VLMTITDSVEYGQLKLGHRDESLTLSVRPLIDKFGGAISNGVVGQVAVIAGMTTGATAAS ITAADQVKFKIAMLLLPAIFLILSMIIFSKKVILTDQKHTEIVAELEATWGQQFENEDSE TEAAEVKGNGTVLTTPVSGELLQLKDSSDPNFASGKMGKGFAIKPNDGRVYAPFDGEVAA AFATRHAIGLKSKDGLTVLIHIGIDTAKLNGTGFVQYVVQGQEVKKGQELIEFWDPTIKQ HGLDDTVLVTVVNSKDYQKLAVTEKFGKTVAAGDPIMEIE >gi|300496815|gb|AEAT01000071.1| GENE 23 22803 - 25007 2914 734 aa, chain + ## HITS:1 COG:BH2223 KEGG:ns NR:ns ## COG: BH2223 COG3345 # Protein_GI_number: 15614786 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidase # Organism: Bacillus halodurans # 5 717 3 717 748 648 45.0 0 MSELIEFDEKQQVFHLHNQEISYIFSVVKGGTLSHLYFGKRVRGYHGELAYPAIDRGFSG NLPGDLDRTFSRDTLPKEYSGAGEMDYHSPATIVRQANGSNAVFLHYAGYEIAPGKPKLL GLPAAYVENNDEAETLTVKLVDDLTGLEYDLIYTIYRDRDVIARSVQIVNKGKESVHLEK AASMQMDLVGRDLEAITLPGAHVNERHPQRSRLIQGRHVFESRRGTSSHQMNPFVALVDP KTDEFSGDAWGLALVYSGNHEFELEKDQLDQLHVTVGINEYNFSWKLTPGASFQTPEVLL VYSNAGLNGMSQTYHSLILDRVIRSKFKRSPRPILVNNWEATYFDFNEDKLKPIVEEAKK LGIEMFVLDDGWFGNRDDDNSSLGDWQVYEKKFPQGLKHFADYVHEQGLKFGLWFEPEMI SFDSDLYRAHPDYLMQVPGRKPSPSRNQYVLDLGRKEVRDNIFTQMTKILDDGGVDYIKW DMNRHLSDIYENDLPADQQGEVYHRYVLGLYDLSERLVDRYPDILLEGCSGGGGRFDIGM AYYCPQIWASDNSDAIARLVIQYGTSLVYPQSMMTSHVSVSPNEQNGRITPFDTRGAVAM CGDLGYELDLTKMSDEDKAAVKQQVADYKQIRGLSQYGKFYTLKAPLDSNQAAWMTVSDD QNEAVVTTVNIMSYAQPYLTKTKLAGLDPDKNYEDLATGKVYGGDELMNLGFYDPTQPHK DFTAKMYHFKAIAD Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:24:22 2011 Seq name: gi|300496806|gb|AEAT01000072.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00030, whole genome shotgun sequence Length of sequence - 9132 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 5, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 551 - 595 4.4 1 1 Op 1 . - CDS 638 - 2167 1910 ## gi|300812211|ref|ZP_07092652.1| Rib/alpha-like repeat protein - Prom 2190 - 2249 1.9 2 1 Op 2 . - CDS 2257 - 3150 860 ## COG0583 Transcriptional regulator - Prom 3239 - 3298 4.7 + Prom 3118 - 3177 4.8 3 2 Tu 1 . + CDS 3286 - 4740 2239 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 4754 - 4780 -1.0 - Term 5220 - 5279 19.7 4 3 Op 1 . - CDS 5281 - 5547 276 ## LDBND_0977 acetyltransferase 5 3 Op 2 . - CDS 5549 - 6268 997 ## COG0546 Predicted phosphatases - Prom 6360 - 6419 3.0 - Term 6430 - 6470 9.2 6 4 Tu 1 . - CDS 6507 - 8114 2022 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 8152 - 8211 3.8 + Prom 8124 - 8183 6.1 7 5 Tu 1 . + CDS 8235 - 9125 472 ## COG0583 Transcriptional regulator Predicted protein(s) >gi|300496806|gb|AEAT01000072.1| GENE 1 638 - 2167 1910 509 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300812211|ref|ZP_07092652.1| ## NR: gi|300812211|ref|ZP_07092652.1| Rib/alpha-like repeat protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Rib/alpha-like repeat protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 1 509 1 509 509 632 100.0 1e-179 MGKKLKAISKVSVALALLGAAVPTVEAAPTAMAAKKATKKAKKSTKKSTKKAKKAKKSTK KKATKKVAKKKASKKPVKKVAKKKAVKKTNAQKYTPKAKSVTVKAGSKLSAKSIITNASK LPAKAKYAFSPKPNLKKAGTYTVSVIVTYPDKSKDKVKNVKIKATAKKAAYNPAKATYEK YKKQAAELGSLEAAQNDLSQKKAALDSANQAYTDAVTSYNNKVSATKASYDEASSAYDAA GYDFIMSKATANFYQDSKAGMANVAVLAGYVNGLDDSVKSFLSTSNLKKDVTLIKELNSL RALDNNFSNHNALGVDYDLMIYASISGFISDSTMNHTYFRNAPTEVYASRAENLAWGYSD PLTGWYTEEKAIYDAHGSGVTGHYTNCMGDYEYVGLVLDQSTGTSAADFGRGKILTSESG TQVTVDEFEAALNNYVASYESTMNAAKTTYEQTKADKSEVNVAQENATSSKKAYDAANAK VKKVTAVNQQLAKAYTAYQNSLKVAHKKK >gi|300496806|gb|AEAT01000072.1| GENE 2 2257 - 3150 860 297 aa, chain - ## HITS:1 COG:PA0528 KEGG:ns NR:ns ## COG: PA0528 COG0583 # Protein_GI_number: 15595725 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Pseudomonas aeruginosa # 1 228 1 227 292 71 25.0 2e-12 MDFEKLKMFCKVVEEGSFQKAAESEFVSQRAVSQMMKKLEDELGLKLFDREKNKIFVTPV GRDFYIYVRNMLQKFSVNVSALRYESTTKQRLICGYFSPFDGALLREKLYGFLDKKMQLS IVHESIDHLLSDIANGLVDLATVLDYGDPGLVVTEPDLASADVYENEMIMGVSDLNPLSK LEEFPLTEIGNLPVLYYMPEENSNYLRQAFLSTLPEECQASCAHISNIEQMQMLVSLNKA VAFYPKGLFEYVLTDREHIRYLPLAGMQERSRYKIKVIYNPHSDKLSLIKKLLASFE >gi|300496806|gb|AEAT01000072.1| GENE 3 3286 - 4740 2239 484 aa, chain + ## HITS:1 COG:L137630 KEGG:ns NR:ns ## COG: L137630 COG1053 # Protein_GI_number: 15673106 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Lactococcus lactis # 7 483 57 497 502 139 27.0 2e-32 MTIAAKDKYDVVVVGSGAAGQAAALTAQENGASVLLLEKGRTTGGSANYSEGIFAVGSYL QKEKGIEVSGTDVLKEEVEYSKYEADSRIWRKYVDTSAENVQWLANEGVVFERVQAMGAG EATWHIYEGFGYGAIHKALEPKFLKLGGELLTSTAAVALKLNEDGSKTITLRNEADGTTE DVTTKVVVLAAGGYLNNKEMMAEGTDYDLSRMIPVSSGKGTGDGLRLGWSVGGRKYGTGM AMLFGGYLDDPDQPYFKMMSSQMNVAAGQQPLLWVNEDGERFVDESVIYNFSYAGNALYT QNEVYSILDTGVIEKMAKDGNYMGLGVYVERGDKMDKLAAEIDQAVADKKPFIFKADTIE ELAEKAGLPKDQLTETISRYNGFAAKGEDEDFGKDADYLVAVEKGPFYAFKLNIGAFCTM GGLKVNVNNEVEDEKGKVIPGLYAAGNDASGLTGDTYGPNMPGTCAGYAFYSGRNAALDA QKYL >gi|300496806|gb|AEAT01000072.1| GENE 4 5281 - 5547 276 88 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0977 NR:ns ## KEGG: LDBND_0977 # Name: not_defined # Def: acetyltransferase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 88 1 88 88 158 96.0 6e-38 MEIKFEEEQKRAAVYDDGKLIGQCVYEDKGDHWIITTTKVDPAYGGQGLGRKLVDTVASA AREKRARLRATCSYAAKVLTKPGYEDLR >gi|300496806|gb|AEAT01000072.1| GENE 5 5549 - 6268 997 239 aa, chain - ## HITS:1 COG:TP0554 KEGG:ns NR:ns ## COG: TP0554 COG0546 # Protein_GI_number: 15639543 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Treponema pallidum # 4 232 6 216 222 93 26.0 3e-19 MKYKAAIFDMDGTILDTSTDLTSALNYAFEQTGHRHDFTVEDIKNFFGSGVVVAVTRALA YEAGSSRESLVAFGTKDEQIPEAVTQAEVNRVLEVFKPYYADHCQIKTGPFPGILDLMKN LRQKGVKLAVVSNKPNEAVQVLVEELFPGSFDFALGERSGIRRKPAPDMTSECVKVLGVP RDKCVYIGDSEIDIQTARNSEMDEIAVNWGFRSVPFLQKHGATVIVDTAEKLEEAILGE >gi|300496806|gb|AEAT01000072.1| GENE 6 6507 - 8114 2022 535 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 22 509 40 477 484 136 29.0 1e-31 MTKLYDNVDHLGTNASAAYTVETDVLVVGAGNAGMEAAAAAKEAGAKTILIEKEKTINLM RVGLASVGSRAQKAAGVTINKQELVESLAAFAQHNVDQRLLETWADNSGATLDWLEEKVL KPHGAHLRAEADAMVTNKAYQAFPTENDPTFDDQSFTSYGDWFLEYQEKHGVDLRFETIL VNLIKEAGRVTGALVKDLVKDEYYQINAKKGVILTTGGYSANVDLLKEWNPLSLKKNVYN DSPRSNGAGITSALNVGAIRDEEPAETIFDRGLVPVGKKTEDMYYQTATYDHWLWIGSYP FLKVNLRGERFANESVPYQFIVNAAAKEPGYLYAMIWDDNYAEALEKVHMLGCARYGFPG YMKDKEAFVADTEQHVKDGLVVKANTLEELAEKLNLPADKLKEAVANNNQAVIDHQDKEF GKEAYRITPIKKKPYYGCVLGGRILCTFDGLRINTKMEVLDENHDPIPGLYAAGNDAGGF FWGSYNDRVPGLAASHAHTFGRLAGQSVAGLTADEPGKAVAQEAHVDAASGASHI >gi|300496806|gb|AEAT01000072.1| GENE 7 8235 - 9125 472 296 aa, chain + ## HITS:1 COG:CAC3409 KEGG:ns NR:ns ## COG: CAC3409 COG0583 # Protein_GI_number: 15896650 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 1 291 23 314 319 122 25.0 1e-27 MDLRQLEVFINLAESLNYSKTAENLHLSQPAVSRIIQRIEGEVGVTLFYRNHREVQLTKN GKLFYDDSKSLTNSYNKALQRTRNSFNREQSNLTIGITDTPLEQAILPEMIKAFHREYPN CKIFLEGFDHNRLKHHLIDHDSDVIFTTHDDITDLAEVKYYHLFSGHFMAIVPADHHLSD REELELDDLAGEKILLMDNNWCPPEQLKLQETIRKKVDDLDISYVNDVEIVSLMVKAGLG ITVMPSFVAIEKADVIKAVKLNYPALLDYGLVCRKDEADPLVIAFCQVMQEQAEGM Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:24:53 2011 Seq name: gi|300496787|gb|AEAT01000073.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00117, whole genome shotgun sequence Length of sequence - 18223 bp Number of predicted genes - 16, with homology - 16 Number of transcription units - 8, operones - 4 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 93 - 761 469 ## Ldb2206 hypothetical protein 2 1 Op 2 . + CDS 763 - 1473 196 ## LBUL_2027 hypothetical protein 3 1 Op 3 . + CDS 1484 - 2113 177 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 4 1 Op 4 . + CDS 2103 - 2612 304 ## LBUL_2029 hypothetical protein 5 1 Op 5 . + CDS 2624 - 3406 477 ## Ldb2210 hypothetical protein + Term 3456 - 3516 9.6 + Prom 4505 - 4564 6.0 6 2 Op 1 . + CDS 4703 - 5470 266 ## Calkro_0519 hypothetical protein 7 2 Op 2 . + CDS 5482 - 6018 370 ## LDBND_2049 hypothetical protein + Term 6030 - 6069 8.1 - Term 6006 - 6066 5.3 8 3 Tu 1 . - CDS 6074 - 6508 372 ## LDBND_2048 hypothetical protein - Prom 6685 - 6744 7.2 + Prom 6617 - 6676 4.0 9 4 Tu 1 . + CDS 6708 - 7391 1172 ## LPST_C2505 extracellular zinc metalloproteinase + Term 7409 - 7453 3.5 + Prom 7422 - 7481 5.4 10 5 Tu 1 . + CDS 7570 - 8739 1422 ## COG5549 Predicted Zn-dependent protease + Term 8757 - 8801 3.5 + Prom 8824 - 8883 5.7 11 6 Op 1 . + CDS 9044 - 10717 242 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 12 6 Op 2 . + CDS 10726 - 13203 1706 ## COG0515 Serine/threonine protein kinase + Prom 13603 - 13662 3.8 13 7 Op 1 9/0.000 + CDS 13799 - 15154 1474 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 14 7 Op 2 . + CDS 15151 - 15945 919 ## COG3279 Response regulator of the LytR/AlgR family 15 7 Op 3 . + CDS 16024 - 17562 1940 ## COG0038 Chloride channel protein EriC + Term 17584 - 17616 5.0 + Prom 17616 - 17675 7.4 16 8 Tu 1 . + CDS 17812 - 18223 134 ## COG3328 Transposase and inactivated derivatives Predicted protein(s) >gi|300496787|gb|AEAT01000073.1| GENE 1 93 - 761 469 222 aa, chain + ## HITS:1 COG:no KEGG:Ldb2206 NR:ns ## KEGG: Ldb2206 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 222 1 222 222 336 98.0 3e-91 MYIIRQQWLQDNTIRKWYFLAAILILFGGCSTAILVSDAPQNQWLSQTIFSRFLVFSLLV PVQILLLLSTFRVRLQDIYVTGSRRIIWKQLEYRLAIALLVTLVPWGVGCLIGMCLNGWG TRLGTIVAEALIRYLYLALSCLAILLLVSLCLLASKRIWAFLAGFVLSGISYFLNVNHHF SLFYDFLIDDLGTLLLSRLPILLSIVLFLAVGVQMEIARKDW >gi|300496787|gb|AEAT01000073.1| GENE 2 763 - 1473 196 236 aa, chain + ## HITS:1 COG:no KEGG:LBUL_2027 NR:ns ## KEGG: LBUL_2027 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 236 1 236 236 374 98.0 1e-102 MRLFKDQFLYFWQLIKVRFLSWLLLTCLFLLVTGGFMRNGRSANIMVFQGLGLAEIRAGI RDFPVLWFGYFFFPLMISLNIFKELWISRVMQLRGQQIKPSHFSWVNVILQLLLAAVYVL ASNACLWLKDLLCGNSPLVLGPWQGGASELHWMLIAWLGVSSLLLIQASCSELTPALGLI MPIVLLVSTSLTAWSGNPLNALMLSRWTSGAELFMFVWTLIWALLYVLVDSKHGWV >gi|300496787|gb|AEAT01000073.1| GENE 3 1484 - 2113 177 209 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 208 2 219 245 72 25 2e-12 MFIELKNVNKVISGRQLLSQVNCEIEAGQIAVFEGINGSGKTLILKTILGLMKVDGEVLV AGKQVKPQDAYPVKAGILIENPSLITDFTATQNMELLAKLDEHISATEIAELLKYFDLSR FPNEKVKKFSLGMKQKLGIAEAFLGSYPLIVLDEPTNALDSDSIDKLVDLIKLRQSKGCT FVIASHDRDFVEQVATKRFKVEEGVVHEA >gi|300496787|gb|AEAT01000073.1| GENE 4 2103 - 2612 304 169 aa, chain + ## HITS:1 COG:no KEGG:LBUL_2029 NR:ns ## KEGG: LBUL_2029 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 169 1 169 169 320 92.0 2e-86 MKHKVWLAAAIVLFVLAGLRYWQVNANPVCRGVDKEIFVQRGQEVHAPGIDFKILSAKMV KGKENVYLTVKVDLKDRDYYADGKHGIIAAVNNMYFNMPYSLSNPSDLDVVDGKGHKVAI GYLTSKTPQPLTVKFDNVRSWYDTENAPARFSFLVGDGNGYKKYSLLLE >gi|300496787|gb|AEAT01000073.1| GENE 5 2624 - 3406 477 260 aa, chain + ## HITS:1 COG:no KEGG:Ldb2210 NR:ns ## KEGG: Ldb2210 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 260 6 265 265 442 98.0 1e-122 MSLLWSRLNKRWFVAAIAVGMAVGLGQIIVNCYTGMANIDSPYTRWLSINTDSSATTIFF ILLPFLASIPAGNMLKEDLDSGLFNKFKLQVPVARLIMQYAAMAFMTGFVTIMIPMLFNL LGYLLILPNFKPDNLLNINIGVFNFNTMLVSLYYSHPFVHACLNILLASVWGGLFSVFVL VNSVWIRNRFASLSTALVLELILMELDTVLPIDDMPSISPTDFLPELGDRPLLWLTALMT IMLAAYCIGMYKLACCRAVL >gi|300496787|gb|AEAT01000073.1| GENE 6 4703 - 5470 266 255 aa, chain + ## HITS:1 COG:no KEGG:Calkro_0519 NR:ns ## KEGG: Calkro_0519 # Name: not_defined # Def: hypothetical protein # Organism: C.kronotskyensis # Pathway: not_defined # 75 253 46 227 232 98 33.0 2e-19 MKKIVKLVVAGLTSIALSVSFTPMKTATVNAASTTNSSLKNDTQQHVSNHRDLTLTGSEF SLDPMNTDTANEPDFDSMSVKELNQYIDEKVQQEANLNSRKAKSIYVAAQATVTTSVLKN MWKAAGEIAKKVGYPCAGTMIQYSASGKNYTEWSQGGGLFASRIKKTSAYKKAKKRKAKS IEFTKGDSKDLFYALHLVSSDFNYTKKHPVHVHDVYDFKFMASYKNSPFTSAINNWGYLC SHMNVLYPSKINIYF >gi|300496787|gb|AEAT01000073.1| GENE 7 5482 - 6018 370 178 aa, chain + ## HITS:1 COG:no KEGG:LDBND_2049 NR:ns ## KEGG: LDBND_2049 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 178 1 178 178 272 100.0 3e-72 MNKKIATIISGLIVILLLGTLLLLKHVDNSASAILEAKITADDDSGTSFATIYDNGKVEK SRSSQNKKFVKPIEVDPQVFVEHTDKKNNIYLTVNEKALRKNKQVSSDENWVKLTKLIAK RSKHAIAILNLFKLGDDYYAFLKYNAGLSDEGSLYQYKSSLTKVANLDSGKISGLKKK >gi|300496787|gb|AEAT01000073.1| GENE 8 6074 - 6508 372 144 aa, chain - ## HITS:1 COG:no KEGG:LDBND_2048 NR:ns ## KEGG: LDBND_2048 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 144 46 189 189 230 95.0 1e-59 MKKEITKAEAVQKKTIYKLSSSYRRDYLDYALSNAQKALSGNKGEVTFAKWLLANSETYL NGKKAPVTNINKLSKAEYERVRRIVSDVAPNGYMTTIYYKRADGTWHRKYSELWNNKNCK FVYVSMTTKEKKFLKISDFAKNSK >gi|300496787|gb|AEAT01000073.1| GENE 9 6708 - 7391 1172 227 aa, chain + ## HITS:1 COG:no KEGG:LPST_C2505 NR:ns ## KEGG: LPST_C2505 # Name: zmp4 # Def: extracellular zinc metalloproteinase # Organism: L.plantarum_plantarum # Pathway: not_defined # 34 227 189 375 375 71 29.0 3e-11 MKRNKILASVSTAALALGMLTVIGKKQVNAADNDDPANIVTVVNYTPTKSAVTAVKTSYN AKTKSLTITSKAKGASKVAVSYNAKALKPVKVTKKGQFKTTVKFTGYKDFTLTGLNAKGA AVTKAYVLAKDSYAATKPTLLKADRTKKGLTFTTDAKKKTTLKFYYKNKLVKKTKLTKDK QKVFFSAKSLKGKKGNFKVVASAAGKKSSQAAQFKIIGVGQATVTNY >gi|300496787|gb|AEAT01000073.1| GENE 10 7570 - 8739 1422 389 aa, chain + ## HITS:1 COG:SP0617 KEGG:ns NR:ns ## COG: SP0617 COG5549 # Protein_GI_number: 15900525 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted Zn-dependent protease # Organism: Streptococcus pneumoniae TIGR4 # 50 186 102 238 240 85 37.0 1e-16 MKRNKILASVSTVALALGALATFGGNHVDAATKSITPALPYRYKTDTAYFLDKSTSAHYK GVWNSATNAWKKNGFAWKAAANHSKTTLSSYSDNSASGLNVAGYDKVQYNKTTGKIISSE VRLNRAAFKKYGYNTAERTNVAEHELGHALGLDHNLKGSVSVMNPANRYYSIQGCDVKGM KKIYSTVASFDSVSDNAGDIVTVVNYTPAVKSAVTAVKTSYNAKTKSLTITGKAKGASKV AVSYNAKALKPVKVSKKGQFKTTVKFTGYKDFTLTGLNAKGAAVTKAYVLAKDSYAAAKP TLLKADRTKKGLTFTTDAKKKTTLKFYYKSKLVKKTRLTKDKQKVFFSAKSLKGKKGSFK VVASAAGKKSSQAAQFKIIGVGQATVTNY >gi|300496787|gb|AEAT01000073.1| GENE 11 9044 - 10717 242 557 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 308 536 116 351 398 97 33 5e-20 MFSLDLRQILAILLSCLATALSLKIPLLLKQVIDHGKMLSRTSSLGQIGFCLLISSLLEA VSQYLLSLAGDERIRDLRLLLQEKLLRLPWNYYKENSRGSLLSHVLNDSSVVKDFTVSVL PSALVSLLTVAASLEILLGLDVKMTLVIVLTFALIASSAFPLGKINEHFAYQNQAKLSRV SADLDENLANIKLIKLTNAQAGVLQKFRGDLQDLFALSRKTDAVFSVTGPLQTVLTLAGF LLILLYGSQRLANGSLSLGMLSSFIMYMFGIISPINNLGNFYMSYAEARGSLKAISEILA QPDEADPGQELPKKAADLKVRDLTFAYPGSQSPVLRDLSLDFKEGAKTALVGPSGAGKTT LINLLTRLEAGYQGQILLGDLEARNCSLPAWRDLFSVVAQDNNIFAGTVADNLLFGLEKS VSRSDMIQALQVANLWPELDLDTQTGEGGWKLSLGQSQRLQLARAYLRDAPCLILDEATA NLDPESEAKVSQAVDRIAREKIVIIIAHRLSTIANADKIYFLDQGQVQAAGRHEELLKHL PKYRAYVEDQLRPLESR >gi|300496787|gb|AEAT01000073.1| GENE 12 10726 - 13203 1706 825 aa, chain + ## HITS:1 COG:SP1344 KEGG:ns NR:ns ## COG: SP1344 COG0515 # Protein_GI_number: 15901198 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 817 1 869 869 208 25.0 4e-53 MDYQAQDYQPYLQADSDYYELDTTEKSDQEFTCSPPADWQNFYQGDWHCCLSPRPLAQQG WKIHLSVALRQEQGMLDLVSHYCFAHLSSFKVTRSRRAWLLKNAKYADRAASGKFITIYP EDEGEFVQTVIDLAALLKDFAPGPYILSDRRWQASPVYYRYGAFKEIVKEISGQKCCCLQ APDGSWQEDQRCPYYYQPDFVQEPAELVRDNFQVKGAEISKLTAYQIKEALHFSNGGGVY LAQKNGKNYVIKEGRPAAGLDGHGQDAFSRIQKEAGWLKKLANVPEVVDGKEDFQAWIHA YLVEDYVSGQTLGDYVAENYPFYPEKRAAYVAKSLQIAEKLRQAVAHVHAQGVAIGDLQA DNVMITEDGEVKLIDFEAAAELAQPYDPGIMTAGFSDLALENYEQADLYALYQSIRSIFL PISNRARASWPMQDLNLRQYFSKEAGDYLENLRQKLLPKCPLLGKENDYGQKEVWPGLNE LRGNISRGIKADWLSPNLIKGDLPLLEDPDQRLTVDNGALGYGLLLARRGELAEKKEYLA WLKKQGAEKISAAGLFTGKAGLGGIVYELGDKAWGRQLIWSAQGSSADLSLKSGLAGIAL AKIALAKEEGLAKTAELIKIGREIAAGYQKMPTAGLMTGQLGAILALWKLGKFLEEDSFK KEAKNGLDALLEKDLVQVDQHVFLAEDGRRMPYLANGTAGLALVLAAIAQDEPKEDRYQK IIIQAAETLDSFCSYMGGLFTGYAGLMLLDLALGRKKALGEKIRLLNNYLLPKEEGTLVA ASCGYRCSMDLAAGASGVLLLLEGIARNDASLWLPLVQTKNWRLF >gi|300496787|gb|AEAT01000073.1| GENE 13 13799 - 15154 1474 451 aa, chain + ## HITS:1 COG:SA1843 KEGG:ns NR:ns ## COG: SA1843 COG2972 # Protein_GI_number: 15927613 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Staphylococcus aureus N315 # 221 436 147 362 371 79 29.0 2e-14 MTLFLQILVMIFSAVVDIWLFCLFAQIKPGKLDWLLLLALEAVLSVALSNFQTYSSLIYE TGLEILLFCGYFYLLKKAGRFRQLLGAGLLFGIISLVIQLSMKVLVSLLPLPSYFYFDAF MNLLLPLAALALLIWQRQRITSLLTDVNSGILVSLLAYLYIVCCAIGAYILDDKKPTEVV LLFFFLLIFQAIFLAVIYREIVHIQRQLLDQQKQEALARQKQLLVKENEQLKEYADYLDR NEDELRRFKHDYQNILLSLKVSAEKGGSHALVEELEKYTSSQFDQKALRKYPDVNHVKIP ELKSIAIAKLAKLYNEKIDYSFGCEPEISQIPQTNLLDLVRIIGIAFDNAIEASQQLEAL GGQGRVEAMYYQEGGDFEFMIRNRIGGPVVDSDQLAQAGYTTKEAHAGLGLANVKEIVSQ HDEQMLLDYGPEDGWFNFSLTLLPENVEEEI >gi|300496787|gb|AEAT01000073.1| GENE 14 15151 - 15945 919 264 aa, chain + ## HITS:1 COG:SA1844 KEGG:ns NR:ns ## COG: SA1844 COG3279 # Protein_GI_number: 15927614 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Staphylococcus aureus N315 # 5 233 3 224 238 95 28.0 6e-20 MSYPVFICDDDPDQIVQVTDTLKRAEQILSDEEKIRFDLASQGNYQDAKAYLLSHPADGG IYFLDVELDQEVDADNGFDLAELIKKQDDRAQIIFLTSHADLSIITYRRRLGPVDYIVKG ADPMAQRRRIVETVEVALDQLHKDSVAKQLTFSYRVGRQIKNIRLTDLVYITTTLTPHKL LIVKQAGEAQFLGSLSQCAKENPLLEKISQSCLVNPDNIEAIDLRRHLVSFVNGDVEEYG AGRQKQMKTLMLEHDYRLAKLMKP >gi|300496787|gb|AEAT01000073.1| GENE 15 16024 - 17562 1940 512 aa, chain + ## HITS:1 COG:L113400 KEGG:ns NR:ns ## COG: L113400 COG0038 # Protein_GI_number: 15673646 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Lactococcus lactis # 7 511 8 512 512 307 38.0 4e-83 MESEDRQTRKSNLRLLFEALVVGLVAGIVVGSFRWLIGQTLAMWQKGYQAAHANPALLWL LAGGVLASVIVAGFLVKQQPHAGGSGIPEVELQLQGKLQLAWWPVFWRKFIGGVLSIGPG LFLGREGPSIQLGSTVGQGVAQGFKASKSDSRVLLATGAASGLSAAFGAPLGGAMFIVEE VFHNFSPRVWLNALAGAIMANFVVSNVFGQTPVLAIDYKHSFPILQYWQLLLLGAFLGLI GRFYQWGLLNFSHVYQKIPVLPRWLHGIIPALILVPVMYYFPGYVGGGNNLILSLNQIHA VNVLVLIFLLRISFSIVSYDSGLPGGIFLPILTMGALLGAVYGQFMVDLGLLDQKLVVNL IIFSMAGLFSAIVRSPFTAIMLIAEMVGSLLHLMPLAVVSVAAYVVNELLGGVPIYESLA GRMQTKEDNDYVGEADQLTISIYEGSQLADHQVKDIAWPDRTLVRVIHRGQKDIIPNGNT KLLAGDLLVLEIDENQRGLVYDKMARLQEAKE >gi|300496787|gb|AEAT01000073.1| GENE 16 17812 - 18223 134 137 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 137 1 137 391 165 57.0 3e-41 MTDFNKECLNALLNKEKFDEFMRTQLEEGLDQLLESELTAFLGYDPYAREGWNSGNSRNG SYFRQVKTQFGPIKVQVPRDRKGEFHQHTLPAYGQHTDTLESTVIQLYSHGVTTREISDL IEKMYGSYYSAGTVSNI Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:25:26 2011 Seq name: gi|300496775|gb|AEAT01000074.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00211, whole genome shotgun sequence Length of sequence - 13734 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 10, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1083 1098 ## COG5421 Transposase - Prom 1114 - 1173 4.8 + Prom 1061 - 1120 2.3 2 2 Tu 1 . + CDS 1322 - 1993 202 ## gi|227530321|ref|ZP_03960370.1| conserved hypothetical protein + Term 2076 - 2120 -0.9 - Term 1650 - 1685 5.1 3 3 Op 1 . - CDS 1703 - 3421 1812 ## LDBND_1780 hypothetical protein 4 3 Op 2 . - CDS 3471 - 4253 769 ## LDBND_1778 hypothetical protein - Prom 4387 - 4446 7.5 - Term 4450 - 4498 3.3 5 4 Tu 1 . - CDS 4521 - 4970 586 ## LDBND_1777 integral membrane protein - Prom 4997 - 5056 5.2 6 5 Tu 1 . - CDS 5080 - 5508 802 ## COG2246 Predicted membrane protein - Prom 5569 - 5628 5.4 + Prom 5607 - 5666 6.8 7 6 Op 1 . + CDS 5696 - 6403 952 ## LBUL_1796 glycopeptide antibiotics resistance protein 8 6 Op 2 . + CDS 6414 - 7937 1894 ## LDBND_1774 ATP-dependent endonuclease of the old family + Term 7969 - 8010 6.6 + Prom 7980 - 8039 7.1 9 7 Tu 1 . + CDS 8237 - 8722 -38 ## LCABL_00290 hypothetical protein + Term 8738 - 8779 6.6 + Prom 8749 - 8808 7.4 10 8 Tu 1 . + CDS 8849 - 10828 2233 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Prom 10873 - 10932 3.4 11 9 Tu 1 . + CDS 11068 - 11271 243 ## LDBND_1771 hypothetical protein + Term 11288 - 11317 1.4 - Term 11276 - 11305 1.4 12 10 Tu 1 . - CDS 11337 - 13664 2504 ## LDBND_1769 methyltransferase fkbm family Predicted protein(s) >gi|300496775|gb|AEAT01000074.1| GENE 1 3 - 1083 1098 360 aa, chain - ## HITS:1 COG:MA3502 KEGG:ns NR:ns ## COG: MA3502 COG5421 # Protein_GI_number: 20092312 # Func_class: L Replication, recombination and repair # Function: Transposase # Organism: Methanosarcina acetivorans str.C2A # 198 312 168 289 517 74 33.0 4e-13 MYYNCLVNIPKNTGKISRNKRGKTTYIEYTYAREYLPEKKYDVARRTTIGKADPDHPGMM FPNPNFEKFFPDVEIPAEGTAAEPVNESRSSCIRIGAFSVVRRIIEDYKLAEHLKRWDDR GKGLLLDLAAYSVIAESNVAQHFPDYAYNHPLMTPQNKIYSDSTISRFIREIDDNDRVEF LNSWNATHDKNEKIYVSYDSTNKNCKAGDIEMAEYGHPKNDVGAPIINYSIAYDMTNEKP LLYESYPGSIVDVSQLKYMLEKIRGYGYKKIGFILDRGYFSKANIQFMDSCDYDFVMMVK GRASFVHGLIMEHMGEFESKRACSIKAYRTYGMTVKAKLYADDDTDRYFHVYYKAKKQAS >gi|300496775|gb|AEAT01000074.1| GENE 2 1322 - 1993 202 223 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227530321|ref|ZP_03960370.1| ## NR: gi|227530321|ref|ZP_03960370.1| conserved hypothetical protein [Lactobacillus vaginalis ATCC 49540] conserved hypothetical protein [Lactobacillus vaginalis ATCC 49540] # 4 97 608 701 707 105 53.0 3e-21 MKKFDSGFTNITGSSMAEIQSVVKSGHPVLYYGFSSYETYFRDKHHAKVIAGYKNGRFLV YDPCYYSAGSGSSHRNAYDYGAIAWVPVSTVARESTGGSNNGTIMITNRLYSKRVRDFPR TLFFCVFLLCIFGLELDQVDKQGEPAEDADDYAQVEDRTSLVAYRDGVLPALEANYNRPP VAAAEGMLLPIDADSGVLVGNYWQVNISCFFTLDLVRNLIGFD >gi|300496775|gb|AEAT01000074.1| GENE 3 1703 - 3421 1812 572 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1780 NR:ns ## KEGG: LDBND_1780 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 37 572 21 556 556 947 98.0 0 MDVKNNLHNNKSNPRKLNLLYLGLLLFVTLLTTLYLASSKAIFAVSDWTFHAARVEEIYL NLKSGSFFTFIAARTFHNTGAASFLFYPCIFLYPWAFLRFILSPVNAFYAWYALVTFATA TISYFSMKAYSKKSLASFIFSLVYTFAPYRLYLGEAVFGEYLAVTFLPLLFLGIYEVLWG DKKKWYLLAISGALVAYAHILSVFLSLQFAVILFIIKLITSRGISKDRIKSLLLSAGVCI FLVLPVIVPFFTDFIGQGLFSAHPGIVYTMAMGPRNLLLNPFSAPQNSWNLSFMLMLTIL TAWAFIKSRRNWIIYGLGLFACFLTTRYFPWKLTAGTPFEMVQLPVRYLSYASLFLTILF ALGSSSVLEEHVTGRKKLALSCSLAVFMALFSLSSLSVYRDTLKHVQDMPKTSANSTQPA PFKRLRDYNYYNQFNYKILFGAFDYMPKSSLTSVQKQNSLLMHQAYLNGKTLTLSPLIKA NQISYQVKSEKAADVDLPVIAYKHTTVSVNGQKHAFRRGNRGTVVVGLKRGQNTVTVGYK ASPVFYLSIVISILSWLALLIYLVKFKAKYAQ >gi|300496775|gb|AEAT01000074.1| GENE 4 3471 - 4253 769 260 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1778 NR:ns ## KEGG: LDBND_1778 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 135 10 144 144 237 96.0 4e-61 MNTNKFTISWGDFSRYRSSMFGLSIIGIMVFRYFEHIRSAHLLLKSEQFWDYYIGSTGGD FLLFLSGMGLFYSLTKNDDICQFYKKRLVRILPAYLFVSMPFFAWRDFIHLHTGILTFIR DLLFLNFIDHADTTYWFIFFIIVMYCKYNIHFDIWLPLPYWIRLTNSLWPFPLMIIGLYL CKLINLTKFLQGFVKISGALFLELYLGHVSARIFLTAHHMSLYILWQYLVMIGLSYLGSF ILKWLENKIQGQLLPLSRKK >gi|300496775|gb|AEAT01000074.1| GENE 5 4521 - 4970 586 149 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1777 NR:ns ## KEGG: LDBND_1777 # Name: not_defined # Def: integral membrane protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 149 1 149 149 249 98.0 3e-65 MRKRNIILAFLGCLGSVLLISGLTFQNSGQSAQLTLKFVNLFEKVHFHLTGTMMAEYPIY HMMRKLAHTAEYFLLGASACYFFSRWQKRYAWSALALSAAFSLFDQTSKLLVPGREFDPT DFPFDIAGYQLGIGLILLLQRPWAKRAVN >gi|300496775|gb|AEAT01000074.1| GENE 6 5080 - 5508 802 142 aa, chain - ## HITS:1 COG:lin2694 KEGG:ns NR:ns ## COG: lin2694 COG2246 # Protein_GI_number: 16801755 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 11 139 16 144 145 90 40.0 7e-19 MDKEKINELWDKYKDIIPYVFWGVMTTLVNIFSYWLCNSVFKWDIMPATIMAQFLSIVFA YLTNRKWVFHSQASTFKEYASEIASFFAARIGTALLDMAIMFIFAEQMHLNSMVIKILAN VVVVIINYVASKFWIFESKDSE >gi|300496775|gb|AEAT01000074.1| GENE 7 5696 - 6403 952 235 aa, chain + ## HITS:1 COG:no KEGG:LBUL_1796 NR:ns ## KEGG: LBUL_1796 # Name: not_defined # Def: glycopeptide antibiotics resistance protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 235 1 235 235 433 97.0 1e-120 MYHELALLIRFVVIGACVLAGYWAIRTGNSFLRLVVTVIYGCALIYYVFASRMLTAAVYY WQHPAQMAAGSEVLKDPAFWKWGLKKVFASSNYGGRYGFLMNVLLFMPLGYIIPSWSKWL HSIMITTFMAFCLSWFIEHFQRMTGLGTYDVNDMIANTMGAFLGAVAIMPTLWMWDIQAR KLRKAREHAEAEAKGEAEAARLDRVSRQLDNPTEKVPKVKMSRKDYRQRHGDQAD >gi|300496775|gb|AEAT01000074.1| GENE 8 6414 - 7937 1894 507 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1774 NR:ns ## KEGG: LDBND_1774 # Name: not_defined # Def: ATP-dependent endonuclease of the old family # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 507 1 507 507 979 99.0 0 MLLRAVELHNFRGYRNFKLKFAPLTSLLGEGEVGKKTILRALDIFFNGPLAKRPLKLQDL NEKALKAGDWQIAITCYFDDFAIKKSFDLKQYLEESDSFAEEGGDFQPVTDQNRGRYRQL SASMPLYVFFDEESKAASPLNFVVRSAIRDKAAEIKEIQDYLDDRLGRSLSQLLANYRDL GEPAPQFVFQDPNLAELIKQREKVGVTGTAKVSRIILAFLLAQSENASIDNVVYAFEAND LSEEDESLLAQALLKLVAKNKQVILIPRTPHLMGLLPLEGIKIIKKVAGQQQLLSDSQIL AEVSSSLGLAADQRAVKSRCVLLVEGQEDVRFVTKINQWMYEEKLVDATFAEKGLFILPV GGCGSLLAWLNFDLFSKLNEPWFILIDSDKGTDEAKQSQRHLHRIRAKYPWMQAHIHATF KREIENYLVFKEGKKTHVFAPYEDVKQHMYDLMQQRHQSWSKDKTASKLMEQMDLADLQD YYEKDGQKHRELVEYFLQIDHFIDGLA >gi|300496775|gb|AEAT01000074.1| GENE 9 8237 - 8722 -38 161 aa, chain + ## HITS:1 COG:no KEGG:LCABL_00290 NR:ns ## KEGG: LCABL_00290 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 161 7 167 167 246 97.0 2e-64 MLGVLGFTVLLSSLFLTILVRRQAAHQKRSEAYIEVAKYLGENPTLFKKVNQLVKLESTT KILSLVFFLGGWIVYSINDFLIISLDDSVRVMILWTSIVLFVILTIVQMMLEFRHKKLLA FPLSNISPVENTAGEKRWILSKILLMIGTAILTTWLQLVAQ >gi|300496775|gb|AEAT01000074.1| GENE 10 8849 - 10828 2233 659 aa, chain + ## HITS:1 COG:PAB0180 KEGG:ns NR:ns ## COG: PAB0180 COG0584 # Protein_GI_number: 14520484 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Pyrococcus abyssi # 400 563 4 141 250 79 35.0 3e-14 MKKRKDIKKLLLASAVLLTFGIGQQLEPLQPVHAARQVKKSRKAKKGKKAKVSINKKKLS LLQGKTARLYLKNSKKKTTWRSSNKKVATVSSKGKVKAVKAGAAKITAKNGKKSYACMVK VTAAKGTLTFSSNDGSGRRQKKIFTLGKKVTLPKTGFNREGYKFLNYTVATNGKGKKYRL GKAYTFKKSTTLWAQYRKLENYTIQIAANQGFGKNITLHELEGDKITLPETGFSKPGYVL DSFNTQADGSGKKYDLGASYALKDVTLYAQYRKLPASEKPERDLGLWGLDSAGNFYQSKN ELTTVDYIKADQTKYLALDNYFDYQIKALKYRDDEKPSYVGLQANWSKQGIILDPGYKYL IMVRKSNQAAIEESEIADIAKLVRLENVDVKTQSTSGLAKTAVKFIAHRGYSTKYPENTT LAFEKAGEEAGVWGIETDVDNTSDNKLVIMHDNTLARTTNISADDPNYRKNINDIPFDQV ENYKIKGVLDGVDKDKVYEDLRVPTLRQYLEICKKYGKEAFLELKYINNMEALKEVVKEI NEAGMQKQTTLISFNIGELEEVRNVIPGGKEIAMMGIYNRHLTDNDYIFLSHLKAGADRN KDTTTLDDILAARKYGVDYGIWTVYQNDDAVADMIKNGVDKVTLNDAGLIESMSAIVNN >gi|300496775|gb|AEAT01000074.1| GENE 11 11068 - 11271 243 67 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1771 NR:ns ## KEGG: LDBND_1771 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 67 13 79 79 125 100.0 6e-28 MENGAFSGVRYNLQEYLEKYPDAEFEIITDTYNMTITVMEGYIYRDGQEAMAGIISLWTL GEVIADF >gi|300496775|gb|AEAT01000074.1| GENE 12 11337 - 13664 2504 775 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1769 NR:ns ## KEGG: LDBND_1769 # Name: not_defined # Def: methyltransferase fkbm family # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 552 1 552 568 674 96.0 0 MKKISKNVLLVSSVGLAGSAFAVTNTHPVFAANNASKKTTVANDQAKVKSAQKSVDQTQS KLTQVQNDLNTANKDLAQKETELANAKSTAEAANSKVAAPNKSNDEAQSALKQAQAATDS ANSDYQNAVKDSTDKQKDLTDSQNKVTNLEKQLTDGEKNNNDIKQKVTEKNNNISDNQKT LSGLQQEKSESDAKLASAQSDLAEMKQKADSASQALQAAKKDLSSATSTNESLTLPQSYI DYVTGKSTDWDTAKKDLQDVVNNHTYPFTDGDENDTVYNDPAALSESDQKRLDFYVKSLI DSVKSQVGSTSKLTITDGSLEFAKRYTQEYQNSNYVFRKYNAIKSASSIMGLDEYAVTGY DIAANRQVTSRSISIINGYIYNSYEFGTTKMSEIAKAAFDLVTQELANPTDYNNIINNNG YFSVAVTTQDDKFYVCLLTIKPANVPSHFNTNEVVKPSQDELATAVQKSQADSDQANKDI ESAQSTFDQAQAQNQKLGQEISDLQKKISDGQSSVASLQKQLTDTAKLQSQIKETKDSLP AKQAALQAANEKVQTTQSKLNDCKTALAAAQKEAANTQSNLDKVKADASSAQQKLQTAQK AYDEAKKKQEKMTASVASLTKKLAYEKKQLAHAKAVLALAQSKKATTKKKSTKKSTKKAT TKKTTKKATKKKVAKKVKKAKKVVVASSKFTSLKGSKKAFVGKWKKAKSVSGYQVRYSTA SSMKKAKTKSTKATKLKVSGLKSKKKYYVQLRSYRKLSGKTYYSAWTKAKTVKNR Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:26:25 2011 Seq name: gi|300496758|gb|AEAT01000075.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00156, whole genome shotgun sequence Length of sequence - 15206 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 6, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 15 - 221 246 ## LDBND_1144 hypothetical protein 2 1 Op 2 . - CDS 287 - 1171 1296 ## COG1284 Uncharacterized conserved protein - Prom 1262 - 1321 3.4 - Term 1335 - 1373 8.6 3 2 Tu 1 . - CDS 1378 - 2010 434 ## COG3436 Transposase and inactivated derivatives - Term 2287 - 2322 6.0 4 3 Op 1 . - CDS 2342 - 3526 1987 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 3574 - 3633 4.0 5 3 Op 2 . - CDS 3707 - 5017 1220 ## COG0019 Diaminopimelate decarboxylase - Prom 5060 - 5119 7.1 - TRNA 5176 - 5247 63.5 # Gln TTG 0 0 - Term 5126 - 5173 10.0 6 4 Tu 1 . - CDS 5351 - 6109 971 ## LDBND_1149 hypothetical protein - Prom 6182 - 6241 6.2 - Term 6202 - 6235 2.3 7 5 Tu 1 . - CDS 6259 - 6543 260 ## LDBND_1150 hypothetical protein - Prom 6788 - 6847 2.1 - Term 7519 - 7553 6.0 8 6 Op 1 . - CDS 7584 - 8480 1456 ## COG2017 Galactose mutarotase and related enzymes - Prom 8500 - 8559 1.8 9 6 Op 2 24/0.000 - CDS 8566 - 9960 1270 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 10 6 Op 3 4/0.000 - CDS 9963 - 10496 872 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit - Prom 10529 - 10588 2.2 - Term 10535 - 10583 4.4 11 6 Op 4 5/0.000 - CDS 10605 - 11492 481 ## COG4974 Site-specific recombinase XerD 12 6 Op 5 6/0.000 - CDS 11492 - 12811 1963 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation - Prom 12842 - 12901 4.6 - Term 12886 - 12924 7.0 13 6 Op 6 . - CDS 12943 - 15117 3038 ## COG0550 Topoisomerase IA - Prom 15146 - 15205 6.5 Predicted protein(s) >gi|300496758|gb|AEAT01000075.1| GENE 1 15 - 221 246 68 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1144 NR:ns ## KEGG: LDBND_1144 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 65 1 65 89 129 100.0 3e-29 MPDERDNSRYQPKYIGLDLATEIATTYAKQHGHHNVKLLMTKTSPDKRSEYFYVFSVTDS LRENGCDC >gi|300496758|gb|AEAT01000075.1| GENE 2 287 - 1171 1296 294 aa, chain - ## HITS:1 COG:SP2113 KEGG:ns NR:ns ## COG: SP2113 COG1284 # Protein_GI_number: 15901928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 18 290 38 310 313 251 43.0 8e-67 MKLFDLNRFSRNYGFLVKIGTAILYSVMVAVALNFFWHPGHIYSSGITGFAQIVNTVTSR YMPFTIPTEVMYFALNVPLFILAWFKIGREFTGYTIFAVAMSAIMMRFIQPTQVSLDPIL CAIFGAAVNGIGTGMALKSGISTGGLDILGIVVRKKTGMNYGKFNILINLIIVLIAGFLF DWSRALYTALNIFINGRFIDSVYTQHNKLQVMIVTEHPNAIIEGIQEKMHRGITIFHDVE GAYGHTEKTVLLTIIDTYDLYDIRTTVEKCDPFVFMSVTEVQKVYGRFREQEVV >gi|300496758|gb|AEAT01000075.1| GENE 3 1378 - 2010 434 210 aa, chain - ## HITS:1 COG:SPy0131 KEGG:ns NR:ns ## COG: SPy0131 COG3436 # Protein_GI_number: 15674346 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 33 188 277 430 450 158 50.0 6e-39 MDHEKAPKHGISWQASADTFIVINILPKDKAIESGATLVANQGINYCSQMFSLERAWEDL SAEERYEKRQSELKPLLEKFSDWCSKKSISVLPSGKLGTAFKYCVKHMDKFINVLKDSRL ELSNNRAERAVKEIVMGRKNWLFSQGSTGAKSMAIIMSILETAKQNGLDQFKYINYLLDK LPNELSFSVWKPIYHGLRMFSSTVSKSPIN >gi|300496758|gb|AEAT01000075.1| GENE 4 2342 - 3526 1987 394 aa, chain - ## HITS:1 COG:SP0035 KEGG:ns NR:ns ## COG: SP0035 COG0436 # Protein_GI_number: 15899981 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 7 391 2 386 389 354 46.0 1e-97 MPKLAQDLLPIINHKLDAVVPSDIRRFDKYVSQFDDVVKLTLGEPDLNTPEHIKQAAIRD IENNDSHYGPQSGKPELLQAISKYVKGVTGVDYDPASEITVTVGATEALNCSLSALLNDG DKVIVPTPVWSMYMQLVCLTGATPVEVDTSDTGFILTPEKLEEVIEREGKGVKAVMLNDP TNPTGVTYPKEVIEGLAEVIKKHHMYAISDEIYSELIYGDAKHYSLATYIPDRTIFISGL SKSHAMTGWRLGYICGPDEIMASVRKMNDFMITVVTNNVQAAAIEALTNGLDDPKEFRDI YQCRVNFMEKGLKKLGFDMALPRGAFYIFAKIPEKYQGDDVGFAKALAKDARVGVIPGSY FGAGGAGYVRMSYASSDEVLKEALKRITKFVEAE >gi|300496758|gb|AEAT01000075.1| GENE 5 3707 - 5017 1220 436 aa, chain - ## HITS:1 COG:lin2066 KEGG:ns NR:ns ## COG: lin2066 COG0019 # Protein_GI_number: 16801132 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Listeria innocua # 9 432 10 434 436 489 54.0 1e-138 MNGLIKASDVNQAGHLQIAGVDALELAARYQTPLQVFDVGKIRQAIRAFKRVFEEEGVDY EVSYASKAFSCLAIYQVINEEGGHTDVVSGGELWTAMKAGFPMDKVSFHGNNKSRAELEM AVDQGVGVIILDNFHEIDLLSQILEEKDASSKVMLRVTPGISAHTNEYIQTGQVDSKFGF DMESGQADRALELVLANPRMKMAGIHAHIGSQIFDVRGFVGCADKLCQLASAWKEKYGYE TDILNVGGGFGIHYTDQDQPLPAEEFVRAIVKEVKSKCQENNLKLPAIWIEPGRSIVGPA GFSLYTVGSRKDLPGYPSYVALDGGMGDNIRPALYQAEYSAVVADRPQAEDEERVNLVGK YCESGDILIKSCPLPKTEPGDVVALLSTGAYGYSMASNYNRNPRPAVVFAEDGVDQLVIK RESYDDLIANDLKYQK >gi|300496758|gb|AEAT01000075.1| GENE 6 5351 - 6109 971 252 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1149 NR:ns ## KEGG: LDBND_1149 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 244 1 244 244 409 98.0 1e-113 MRKIKCELCGQRDLLKEGSRFVCQTCGAAYSADQLRRQFDLADQAEIYAEAKQAYRAKRF KQARQLYLALAEEGDQQAAFYASLSSSQLDPAADFAPLLNQLRAALVASREKGGEGYFAF ASRALGEVIVFALAVEEECEEDFQKQAQRLELSSRQTLEKAHQKMQKEAGRAWLLMSQAA HLCVGESDDLAAVSPYFWELVDAIIDDLSINQKRGTIALGNVKEERAYFEALKAEKKAKK LVNGQLFKVNLG >gi|300496758|gb|AEAT01000075.1| GENE 7 6259 - 6543 260 94 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1150 NR:ns ## KEGG: LDBND_1150 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 52 88 1 37 37 63 97.0 3e-09 MTVTVNNPADSSRYTPVLLAAKTQVGKAIAASSLIANFASLPAGSQASYLTVPDFAKAGS YKTQIKVTYPDKSTWTSSEFMIEVAPGAESTQSN >gi|300496758|gb|AEAT01000075.1| GENE 8 7584 - 8480 1456 298 aa, chain - ## HITS:1 COG:CAC3032 KEGG:ns NR:ns ## COG: CAC3032 COG2017 # Protein_GI_number: 15896283 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Clostridium acetobutylicum # 5 290 5 295 298 204 36.0 2e-52 MDYTIENEILKVTVSSRGAELQSVIGKHIGNEYIWQADPEVWGRHAPVLFPIVGKLKNDE YSYQGQTYHMGQHGFARNMEFALEEQTKEKLTFLLTDTEETRAVYPFKFEFRVSYELLNN MIKESFHVTNKGEGDMIFGVGGHPGFALPVEDGVKKDDFYLQVNPAKPRVQVPLEGGLLN WEKRFLAPTESLITITDDLFKDDAMVLVMRHPDNKFSIKTETSRFHINVRTDSAPYVGIW SQYPKTADYVCIEPWWGIADLTDTDGDLEDKKGMNRLASGEDFEASFRMSFHSKVQSK >gi|300496758|gb|AEAT01000075.1| GENE 9 8566 - 9960 1270 464 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 5 464 9 466 466 493 56 1e-139 MREKTPKQIVDLLDKYIIGQNEAKKSVAIALYNRYRRAQLPEYVQKDITPKNILMAGPTG VGKTEIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVE GQAIRQANKTLVRLLVPGVKRNNRQNQMQQMQEMMQSLLAGGGMPEETEEVTDEIRNQRL SVAEKLDRGLLENEEVTIEVEQAPKANPMGDMMGQMGMDMSSMLGDMLPKKKVKRTLPVG QARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREGVQR DILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELDALTKDD FVRILKDPQNSLLKQYIALLKADGVDLVFTAEAVDKIAEIAFEVNQGTDNIGARRLATIL EKLLEEVLYEGPDMEMGQITITQAYVEQKLSDIVKNKDLTKFIL >gi|300496758|gb|AEAT01000075.1| GENE 10 9963 - 10496 872 177 aa, chain - ## HITS:1 COG:lin1317 KEGG:ns NR:ns ## COG: lin1317 COG5405 # Protein_GI_number: 16800385 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Listeria innocua # 2 174 6 179 179 182 55.0 3e-46 MTTICSVKYNGQTAIAGDGQVTLGKSIIAKTTAKKIRRIYHDQVVIGFAGGVADAVSLQE MLEGKLESYSGDLRRAAVEMAQSWRKDPTLQKLEAMVIAFNDQDLLLISGNGEVLEPDES VVAIGSGGYYAQAAAVGMLRHASGMTASEIAKEAVNIAADIDVFTDHEIVTDEIEEK >gi|300496758|gb|AEAT01000075.1| GENE 11 10605 - 11492 481 295 aa, chain - ## HITS:1 COG:BH2465 KEGG:ns NR:ns ## COG: BH2465 COG4974 # Protein_GI_number: 15615028 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus halodurans # 7 294 12 302 303 232 43.0 7e-61 MTLEEQFLSYLKNERSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLLAT GQKLASSTLSRKLSSLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVIR SLNDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFFDQ ESKKYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGAHP HELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTAEYRQHFPRK >gi|300496758|gb|AEAT01000075.1| GENE 12 11492 - 12811 1963 439 aa, chain - ## HITS:1 COG:L56416 KEGG:ns NR:ns ## COG: L56416 COG1206 # Protein_GI_number: 15673213 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Lactococcus lactis # 5 429 6 438 447 575 66.0 1e-164 MTEKVTVIGAGLAGSEAAWQLAKRGIKVDLYEMRPKKMTPAHESGNFAELVCTNSMRSNQ LSNAVGLLKEEMRQMDSLIMQAADACQVPAGGALAVDRELFSKYVTDKLTSLPEVTIHDE EITDLPSEGITVIATGPLTSDSLAEKIQDFEGTESLHFFDAAAPIIAADSIDMDIVYKKS RYDRGEAAYLNCPMTKEEYDRFANALVHAETAEMHGFENSEVFEGCMPIEVMAARGAKTM LFGPLKPVGLENPKDGKTPYAVVQLRQDNAAASMYNIVGFQTHLKYGEQKRVFQMIPGLE NARFVRYGKMHRNTYMASPEVLKASYEAKKRPGLFFAGQMTGVEGYVESAGSGLVAGINA AREALGQETVEFPVTTALGSMAHYITTTDTKHFQPMNASFALIPGLEGKKIRNKRERHEK ISERGLADLAAFKAEKLAD >gi|300496758|gb|AEAT01000075.1| GENE 13 12943 - 15117 3038 724 aa, chain - ## HITS:1 COG:SPy1164_1 KEGG:ns NR:ns ## COG: SPy1164_1 COG0550 # Protein_GI_number: 15675140 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Streptococcus pyogenes M1 GAS # 34 599 27 589 589 699 64.0 0 MPATAKEDKSKSSKKTAAAKKSSPKRKKSKVKKDLVIVESPAKAHTIEKYLGRKYHVIAS KGHIRDLPKSQMGVDIDHDYQPKYISIRGKGDTIKELKAEAKKANKVYLASDPDREGEAI AWHVAHVLGLDEKEANRVTFNEVTKDAVKDAFNHARTIDMDTVNAQQARRVLDRLVGYSL SPILWSKVKKGLSAGRVQSVALKLVIDREKEIKAFKPVEYWTIDAEFAKGKDKFQASFYG EEGKKTELPNNEAVQKLLAKFDKKQPFTVSKVVKREVRRQPAAPFTTSTMQQEANRRLNF RTSKTMNIAQHLYEGISLGKEGTVGLITYMRTDSKRISPVARQEAAQFIAEEYGSDFAVK KERHFKNQGDAQDAHEAVRPTSVYRTPKSLEKVLTKDELRLYTLIWSRFVASEMTPAVFD TVRYDLTQNGVTFRASGSVMKFAGYTKVYDNRSEKNVALPALEEGDEVKLTKSDNKQHFT QPPARYTEASLVRALEENGVGRPSTYAPTIQNIQSRNYVKLEGRAIVPTELGEIVDGLVE QFFPDITSVDYTAKLEDELDEVEEGKKDWVSVVDQYYKPFSKELEKADSEIQKIQIKDQP AGFDCEVCGAPMLVKMGRYGKFYGCSRFPDCRHTQTIVKKVGVTCPKCGEGEVLEKKSKR GRKFYGCSRYPDCDFVSWDKPISRVCPHDGHFLVEKKRKDGMVVLCPNGDYKEEPREEQD EAAE Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:26:36 2011 Seq name: gi|300496751|gb|AEAT01000076.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00107, whole genome shotgun sequence Length of sequence - 7339 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 4, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 429 - 1541 644 ## COG1403 Restriction endonuclease - Prom 1688 - 1747 2.6 - Term 1854 - 1899 4.5 2 2 Tu 1 . - CDS 1918 - 2832 1384 ## LDBND_1944 hypothetical protein - Prom 3065 - 3124 6.6 + Prom 3005 - 3064 9.0 3 3 Op 1 . + CDS 3131 - 3322 56 ## LDBND_1943 hypothetical protein 4 3 Op 2 . + CDS 3324 - 3899 260 ## LDBND_1941 hypothetical protein + Term 3930 - 3983 6.5 + Prom 4311 - 4370 6.5 5 4 Op 1 . + CDS 4417 - 5820 2175 ## COG0114 Fumarase 6 4 Op 2 . + CDS 5846 - 7264 2281 ## COG0471 Di- and tricarboxylate transporters Predicted protein(s) >gi|300496751|gb|AEAT01000076.1| GENE 1 429 - 1541 644 370 aa, chain - ## HITS:1 COG:all7277 KEGG:ns NR:ns ## COG: all7277 COG1403 # Protein_GI_number: 17233293 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Nostoc sp. PCC 7120 # 8 321 3 323 427 115 30.0 1e-25 MKHENANRVFLLNKDGKPLMPCRPRKARLLLKSGKAFVVKKYPFTIQLKYGSYGYKQKVS LGVDTGQRHIGFAVVSQDKVLHQSEVELRQDVHTNLYTRKIYRRGRRNRKTRYRQARFLN RVHGKRDGLWLPPSVKSKVSHNIAWIKRYLAVLPNPDLHIEVGKFDMAKMVNPDISGKQY QEGSLKDWKNYEYYVLARDEYTCQLCYKHGEGVKLVVHHIVYRSQGGTDRVDNLITLCTN CHTTKNHQPGGKLYKWMKAKKKVTKQLKGATFMNILRKRIMTTFPEASFQYGSQTYVERK NLLLPKGHFMDAIAISGIKPVGQMPETVTMISQFRKKKRSLHEATARKGRKQPNMSSKRN EKNTKYACGL >gi|300496751|gb|AEAT01000076.1| GENE 2 1918 - 2832 1384 304 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1944 NR:ns ## KEGG: LDBND_1944 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 304 1 304 304 539 98.0 1e-152 MARMSRRQYQERQEQTAQKKTRQTNPNSVPRLDTDGASRSKQKVRLNFWQIFADRPYVTV IMISLALFCILAKWWIGLAIIIILTIAGIFVIGRSHHPNRVLSLEFKLKASRKLSMIKAL QLLGSTIMFLAAYMRQIVSVDFSSAGATDSLTVIQNMLSNQGTFGQQGSYFLNLFNQLTG GSLWGTYRYATNSSQMMNSTAGTMIILWIFLLMIAPAFCVLSQFFREPYSRHVMTVASLI STISFALTPTLMNRWVISYAVENQMSQAAAENAVQVGGMVYPAIISAVFVFILAIYREIK KDEC >gi|300496751|gb|AEAT01000076.1| GENE 3 3131 - 3322 56 63 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1943 NR:ns ## KEGG: LDBND_1943 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 13 63 25 75 75 67 96.0 2e-10 MAAVAAAGIGAVSLGAVNLPQPVNAATNDVQARSSQDDLKTAQENAKTAEAAKRASCFDR GGS >gi|300496751|gb|AEAT01000076.1| GENE 4 3324 - 3899 260 191 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1941 NR:ns ## KEGG: LDBND_1941 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 122 191 1 76 76 73 86.0 4e-12 MAEKKEALATATAKAAATLYALNLAKARLAALEATQPTDPTTPTEPTQPSTEPSTDPTTK PSTEPSTEPSTEPSTEPSTDPTTEPTTEPSEELSTEPTAEENTEEPADTEEDTDGGDVVT VVTTDEEPATKSAAKTPTLVTKSANTAPVAKAPAAAQLPQTGEKDAKPGILSLLAGVSLF GFSFEKRKQEK >gi|300496751|gb|AEAT01000076.1| GENE 5 4417 - 5820 2175 467 aa, chain + ## HITS:1 COG:lin2328 KEGG:ns NR:ns ## COG: lin2328 COG0114 # Protein_GI_number: 16801392 # Func_class: C Energy production and conversion # Function: Fumarase # Organism: Listeria innocua # 7 460 3 455 455 442 52.0 1e-124 MAEQEYRIESDTIGEVKIPKEALWGPQTERSRNNFPSGELMPLAIIRAFLHLKKAAAESN VEVGDEPAEKGQAIEEAIDQLLALSDEDLRKDFPLHVLQTGSGTQTNMNVNEVVANLANK LHPGLNILPNDDVNRGQSSNDTYPTAMNIVAVEAVDKLEPAIEHLIDELKVKQDKYWKTV KVGRTHLQDATPLTFGQEVSGYISALKHDLAYIQELKPSLYELAIGGTAVGTGLNAAPGM TEAIAGKLSEVYGHEFKVDTNKFWGLAHHSALSVMHGAFKTLANDMFKIAQDIRFLASGP RAGYGELNIPANEPGSSIMPGKVNPTQAEAVTMAVARVLGNDVTINFAASQGNFEMNVFK TVMIAAFLESADILAGTITGFADKMIHGLTVNEQRMDDLLENSLMTVTALSPKIGYHEAA VIAQTAQREGTTLKEAALKSGKVTEEQYDEWMDYMAMTNIDRTKPEE >gi|300496751|gb|AEAT01000076.1| GENE 6 5846 - 7264 2281 472 aa, chain + ## HITS:1 COG:SA2486 KEGG:ns NR:ns ## COG: SA2486 COG0471 # Protein_GI_number: 15928280 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 1 472 1 472 472 452 55.0 1e-127 MLTKVNYKGFIWPLIIGIGLFLLTPLRPATITVAGWHMFAIFLATIIACITKPLPIAGVS IIAYVTIIGLGLVQMKPALSAFADSTPWTIAMAYMIARGFTKTGLGRRIALIFVRAFGKK TLGLAYSLSMIDLVVSPATPSNTARSGGIVLPIIESLSDTFGSKVSDGTEAKIGSYLVFN EFHANTISSSLFMTASAPNVAAVGLAAANGVKISWFGWVAAAIVPALISFILVPIIIYKM YPPKIKETPNAKEWADGQLKEMGAIKASEKVMMAVFILALVLWMLSSFIGLDATWVAFLA TALLLVTGVLTTKDMLSETGAWNVVVWFSILIFMANQLSLKGGVIPWLQTSIKSVIGGMS PVLVMAILVLVYFYSHYLFASGTAHVVAMYAPLLLIAKSAGVPVMFAAIMLGMTGAIFQS TTHYSCGPATALFAPGYVKQTDWWKMCFVLGLFYLVVYGGIGGLWMKLIGLW Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:27:07 2011 Seq name: gi|300496688|gb|AEAT01000077.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00110, whole genome shotgun sequence Length of sequence - 62503 bp Number of predicted genes - 64, with homology - 64 Number of transcription units - 34, operones - 16 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 206 217 ## LDBND_0044 transposase + Prom 530 - 589 3.6 2 2 Tu 1 . + CDS 617 - 1054 613 ## COG0662 Mannose-6-phosphate isomerase + Term 1063 - 1096 5.1 + Prom 1094 - 1153 5.8 3 3 Op 1 . + CDS 1256 - 1567 328 ## pli0064 hypothetical protein 4 3 Op 2 . + CDS 1589 - 2023 641 ## LDBND_1869 hypothetical protein + Term 2031 - 2074 2.1 - Term 2019 - 2060 8.5 5 4 Op 1 . - CDS 2106 - 2435 217 ## LBA1402 hypothetical protein 6 4 Op 2 . - CDS 2435 - 2713 284 ## LBA1403 hypothetical protein - Prom 2776 - 2835 2.8 - Term 2758 - 2807 15.4 7 5 Op 1 12/0.000 - CDS 2992 - 3483 749 ## COG3610 Uncharacterized conserved protein 8 5 Op 2 . - CDS 3486 - 4259 979 ## COG2966 Uncharacterized conserved protein 9 5 Op 3 . - CDS 4294 - 5838 2309 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 10 5 Op 4 . - CDS 5853 - 6230 629 ## LDBND_1873 hypothetical protein - Prom 6250 - 6309 4.5 - Term 6302 - 6336 4.4 11 6 Tu 1 . - CDS 6349 - 7488 1567 ## COG1316 Transcriptional regulator - Prom 7637 - 7696 4.6 12 7 Tu 1 . + CDS 7828 - 9126 604 ## COG0675 Transposase and inactivated derivatives + Term 9144 - 9177 -1.0 + Prom 9359 - 9418 5.3 13 8 Tu 1 . + CDS 9448 - 11250 2970 ## COG1164 Oligoendopeptidase F + Term 11255 - 11302 10.1 - Term 11247 - 11286 5.0 14 9 Op 1 2/0.000 - CDS 11320 - 12546 1782 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases - Prom 12597 - 12656 4.9 15 9 Op 2 . - CDS 12676 - 14214 2455 ## COG1620 L-lactate permease - Prom 14300 - 14359 5.0 16 10 Tu 1 . - CDS 14799 - 15050 225 ## Ldb2036 hypothetical protein - Prom 15108 - 15167 4.1 - Term 15142 - 15169 0.1 17 11 Op 1 42/0.000 - CDS 15187 - 15984 1193 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 18 11 Op 2 . - CDS 15984 - 16637 192 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 19 11 Op 3 . - CDS 16663 - 17463 1344 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 17606 - 17665 6.4 - Term 17664 - 17714 10.2 20 12 Op 1 19/0.000 - CDS 17730 - 19700 3296 ## COG1299 Phosphotransferase system, fructose-specific IIC component 21 12 Op 2 10/0.000 - CDS 19749 - 20663 1353 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 22 12 Op 3 . - CDS 20663 - 21412 863 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 21511 - 21570 3.5 - Term 21446 - 21485 -0.9 23 13 Op 1 . - CDS 21575 - 22294 1139 ## COG1794 Aspartate racemase 24 13 Op 2 . - CDS 22338 - 23888 2390 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 25 13 Op 3 40/0.000 - CDS 23925 - 25124 1591 ## COG0642 Signal transduction histidine kinase 26 13 Op 4 . - CDS 25114 - 25800 1010 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 25832 - 25891 5.4 - Term 25860 - 25894 3.2 27 14 Op 1 35/0.000 - CDS 25929 - 27773 213 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 28 14 Op 2 . - CDS 27784 - 29511 219 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Prom 29536 - 29595 10.5 - Term 29545 - 29604 16.0 29 15 Op 1 . - CDS 29650 - 30420 1245 ## COG4858 Uncharacterized membrane-bound protein conserved in bacteria 30 15 Op 2 4/0.000 - CDS 30435 - 31535 1853 ## COG0012 Predicted GTPase, probable translation factor 31 15 Op 3 1/0.200 - CDS 31612 - 31875 412 ## COG4481 Uncharacterized protein conserved in bacteria 32 15 Op 4 25/0.000 - CDS 31868 - 32758 1361 ## COG1475 Predicted transcriptional regulators 33 15 Op 5 25/0.000 - CDS 32736 - 33515 1054 ## COG1192 ATPases involved in chromosome partitioning 34 15 Op 6 4/0.000 - CDS 33517 - 34341 1204 ## COG1475 Predicted transcriptional regulators 35 15 Op 7 . - CDS 34360 - 35079 841 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division - Prom 35154 - 35213 7.4 + Prom 34988 - 35047 9.0 36 16 Tu 1 . + CDS 35251 - 35775 967 ## LDBND_1902 membrane ancor connecting MutS2 with cell-division z-ring + Term 35777 - 35826 11.6 - Term 35770 - 35808 4.2 37 17 Op 1 . - CDS 35821 - 36780 1718 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis 38 17 Op 2 . - CDS 36792 - 37574 939 ## COG2365 Protein tyrosine/serine phosphatase - Prom 37596 - 37655 5.5 - Term 37600 - 37651 13.3 39 18 Op 1 1/0.200 - CDS 37668 - 38216 704 ## COG0431 Predicted flavoprotein 40 18 Op 2 . - CDS 38233 - 38772 698 ## COG0431 Predicted flavoprotein - Prom 38800 - 38859 8.5 41 19 Tu 1 . - CDS 38900 - 39445 764 ## COG1309 Transcriptional regulator - Prom 39526 - 39585 8.1 + Prom 39636 - 39695 3.6 42 20 Tu 1 . + CDS 39724 - 41124 2115 ## COG4690 Dipeptidase + Term 41135 - 41196 9.2 - Term 41129 - 41174 4.0 43 21 Op 1 . - CDS 41203 - 41664 376 ## LDBND_1911 hypothetical protein 44 21 Op 2 . - CDS 41648 - 42310 204 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 45 21 Op 3 . - CDS 42314 - 42958 388 ## LDBND_1913 hypothetical protein 46 21 Op 4 . - CDS 42951 - 43649 404 ## LDBND_1914 hypothetical protein - Prom 43725 - 43784 6.2 - Term 44542 - 44588 9.1 47 22 Tu 1 . - CDS 44605 - 45102 685 ## COG2190 Phosphotransferase system IIA components - Prom 45126 - 45185 4.4 48 23 Tu 1 . - CDS 45209 - 45508 116 ## Ldb2066 hypothetical protein - Prom 45594 - 45653 3.1 - Term 45835 - 45877 9.2 49 24 Tu 1 . - CDS 45899 - 46291 496 ## Ldb2067 FMN-binding protein - Prom 46317 - 46376 5.1 + Prom 46239 - 46298 2.7 50 25 Tu 1 . + CDS 46332 - 47309 776 ## COG2378 Predicted transcriptional regulator + Term 47366 - 47426 16.2 - Term 47582 - 47614 5.0 51 26 Op 1 36/0.000 - CDS 47623 - 48297 311 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 52 26 Op 2 1/0.200 - CDS 48299 - 49357 1760 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 53 26 Op 3 . - CDS 49400 - 49906 995 ## COG1309 Transcriptional regulator - Prom 49941 - 50000 6.3 - Term 50002 - 50037 5.8 54 27 Op 1 . - CDS 50218 - 51621 2313 ## COG0277 FAD/FMN-containing dehydrogenases - Prom 51690 - 51749 5.4 55 27 Op 2 . - CDS 51802 - 52539 748 ## COG3022 Uncharacterized protein conserved in bacteria - Prom 52628 - 52687 7.2 + Prom 52518 - 52577 6.6 56 28 Op 1 . + CDS 52604 - 53239 849 ## LDBND_1927 hypothetical protein + Prom 53243 - 53302 4.5 57 28 Op 2 . + CDS 53333 - 54544 2070 ## COG1376 Uncharacterized protein conserved in bacteria + Term 54554 - 54619 17.2 - Term 54553 - 54595 4.1 58 29 Tu 1 . - CDS 54615 - 54800 296 ## LBUL_1920 hypothetical protein - Prom 54843 - 54902 7.6 + Prom 54879 - 54938 4.1 59 30 Tu 1 . + CDS 54972 - 55604 855 ## COG0778 Nitroreductase + Term 55630 - 55667 5.4 - Term 55609 - 55663 10.5 60 31 Tu 1 . - CDS 55676 - 58207 3699 ## COG0308 Aminopeptidase N - Prom 58404 - 58463 7.4 + Prom 58432 - 58491 7.6 61 32 Tu 1 . + CDS 58616 - 59434 1295 ## LBUL_1924 membrane protease family stomatin/prohibitin-like protein + Term 59449 - 59488 10.0 + Prom 59511 - 59570 6.8 62 33 Tu 1 . + CDS 59605 - 60552 1504 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain + Term 60587 - 60625 2.1 + Prom 60610 - 60669 6.2 63 34 Op 1 . + CDS 60829 - 61569 1195 ## COG4690 Dipeptidase 64 34 Op 2 . + CDS 61641 - 62357 1419 ## COG4690 Dipeptidase Predicted protein(s) >gi|300496688|gb|AEAT01000077.1| GENE 1 2 - 206 217 68 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0044 NR:ns ## KEGG: LDBND_0044 # Name: not_defined # Def: transposase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 68 1 68 460 126 98.0 3e-28 MVQAKRKKKQKTIPRNSELIDQLASEYYIKATPELDRVAEIAHKIYNAALYQLRQALFKR KGSIYYEG >gi|300496688|gb|AEAT01000077.1| GENE 2 617 - 1054 613 145 aa, chain + ## HITS:1 COG:BS_yrkC KEGG:ns NR:ns ## COG: BS_yrkC COG0662 # Protein_GI_number: 16079709 # Func_class: G Carbohydrate transport and metabolism # Function: Mannose-6-phosphate isomerase # Organism: Bacillus subtilis # 4 137 53 185 186 135 47.0 2e-32 MFDLKDYGPDPCALDLKQAALENEKYRETLWTGDHFQVTLMCIPAGGGDIGLEIYHDNDQ FIDLVSGTGRVQLGKEKDNLTVDKIVHAGEAVFIPDNTWHNVTNAGDEPMKCFSLYAPVK HAHGTTESTKDDAIAQEGPLEGSNE >gi|300496688|gb|AEAT01000077.1| GENE 3 1256 - 1567 328 103 aa, chain + ## HITS:1 COG:no KEGG:pli0064 NR:ns ## KEGG: pli0064 # Name: not_defined # Def: hypothetical protein # Organism: L.innocua # Pathway: not_defined # 40 103 238 301 301 83 59.0 3e-15 MKHIKYLTFLALSILGIAVLSGKAYAATDDEVTTLYNKDYQIIQGTSGFNPNYCSRMVWQ AFYHGSGNKNVIQTSTAGLTYIFPGALVNTFTSKYRPYKVGTY >gi|300496688|gb|AEAT01000077.1| GENE 4 1589 - 2023 641 144 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1869 NR:ns ## KEGG: LDBND_1869 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 144 12 155 155 255 95.0 5e-67 MKAIKQLYHEHKIITLILTSPIWLFVLFSVLFTANEIYKSTQEGVVTEVLNKTLPQHGYS DIYYLNQVKADSHFGMGTTYVSSFSTKRTVKQNQDLFAKAGKKIDKSDANLPYYKEVTVR RSGMGWKVTVSDSIGQEESSYSVK >gi|300496688|gb|AEAT01000077.1| GENE 5 2106 - 2435 217 109 aa, chain - ## HITS:1 COG:no KEGG:LBA1402 NR:ns ## KEGG: LBA1402 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 109 1 109 115 171 77.0 6e-42 MSKLRFRPRATFNADLKRLARLDPTIIDDIRAAIDEILETGTLPKEYGDHPLKRRLAGYR EFHVRDTPKGVQPSDVNDVLVIWYVERHDLVAVAVRAGSHERLFHDQNA >gi|300496688|gb|AEAT01000077.1| GENE 6 2435 - 2713 284 92 aa, chain - ## HITS:1 COG:no KEGG:LBA1403 NR:ns ## KEGG: LBA1403 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus # Pathway: not_defined # 1 92 1 92 92 146 92.0 3e-34 MTLALTQSDFRAHIKKYLDQVNDDDEVVYIARSNSRSVAVLSQEKLYWMEKALQAKEDSL DYAVARDQLIRRNVLPEDPIVESNDDYWEQFK >gi|300496688|gb|AEAT01000077.1| GENE 7 2992 - 3483 749 163 aa, chain - ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 10 154 4 148 152 117 41.0 9e-27 MLGMQVSFNIWDVLINLVFSYIATVSFALTVNIPHRVIHWSGICGCAGWMVYWLVTEASG GRMISNTLGAFAVGLVAVVLAKWKKCPVTLFSVPGLVPLVPGAPAYMVVRRLIDGKYIAA QQMMMRVAIVTVSIALGFLLSTLFQEAWNKYIKRLKLREKLKK >gi|300496688|gb|AEAT01000077.1| GENE 8 3486 - 4259 979 257 aa, chain - ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 10 255 9 249 250 188 44.0 1e-47 MSTDAYMKRVVHTCLKAGRLMLAGGSEMYRVEDTMRRIAVNAGIKEVNVFAMPTGLFVSL DDGECSTVTELETVKKRAINLELVDQVNEFSREFADKRIDLEELEEKLREIEENIPTFPL WLQVIGAGILSATLMVLFLDVYDWIDFPVAGLIGASGYLMDSWLKGHTKIRFLAEMIAAM EMGLLTIIINGIFPACNVNNILTGALMTLVPGLALTNALRDLFMGDWVSGIVRMCEAAMT AIALGGGVGIVIRFLGA >gi|300496688|gb|AEAT01000077.1| GENE 9 4294 - 5838 2309 514 aa, chain - ## HITS:1 COG:CAC3339 KEGG:ns NR:ns ## COG: CAC3339 COG0488 # Protein_GI_number: 15896582 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 509 1 507 518 431 43.0 1e-120 MSLLTVSGLTQGFAEKTLYEDANFVLNKEDHMGVTGQNGVGKSTLIKILTGEILPDEGSV KWQNKLSVGYLDQYAKLTPGLTMRDFLKTAFDQLYQDEARLNQLYIDYSESGDESLLTKA GRLQTYLEENNFYDLDTEIDRVASGLGLAELGFDRDVSQLSGGQRSKLILAKLLLEQPQV LVLDEPTNYLDVGHIDWLVDYLNDFTGAFIVVSHDYDFLGRITNCIIDIDFGTITRYTGT LKQAMRQKEANRQTYMKAYANQQRQIAKTEAYIRKNKAGTRAKSARSRQKQLDRMEILTP PQNGKKAKFDFPYVETASNLLLQTQDLVIGYDQALVKEAFNFSVGNGEKVAITGFNGIGK TTLLKTLLGQIPPIYGGFDLSATAKLAYFKQDLTWPNQNMTPLQYLESEFDQKKPKELRQ ALARMGLTAQLVMSPLKELSGGEQEKVKLAEMQFEPANLLFLDEPTNHLDNETKDSLRKA IVNFPGGVIIVSHERDFFRGDWVDKVVDIEAMNN >gi|300496688|gb|AEAT01000077.1| GENE 10 5853 - 6230 629 125 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1873 NR:ns ## KEGG: LDBND_1873 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 125 1 125 125 243 100.0 3e-63 MKKRYYPYIYGGIAGVMTFIAMFYICRHSFALTNTQSLVWGIIGAILVFVSSSYTEYAIA EIQRISDKYHLDEEFLSGLTKLSPSYFRVADDHLHLTAPRYLWPRILKTLQKYDHERKQA ENFHL >gi|300496688|gb|AEAT01000077.1| GENE 11 6349 - 7488 1567 379 aa, chain - ## HITS:1 COG:BS_lytR KEGG:ns NR:ns ## COG: BS_lytR COG1316 # Protein_GI_number: 16080618 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 50 328 28 304 306 210 40.0 4e-54 MEEQHSRRQQKIFRNVTLVQAGFLKKSRRPLPTIIGLLVTFAVMIAATWGAHAYFSLHSA LVSMNGNNGSTATSARIAAKKPISILVLGVDQGLEGRNDKGNSDTIILVTVNPTTKKATM TSIPRDTLTEILGETSSTSYYMFKVNSAYQFGGSSGSLKTVSAMLNVPINYYVEVNMKAL KGLVNVLGGVDVNVPFSFSYDWCDFKKGKQHLDGRHAIAYARMRYDDPRGDYGRQLRQRQ IIQAVVKKGLSVNGLANYQKLLKVFAKYVKTNLTFGDMTSLAINYRGAASNISSGYIQGH DATISGTSFQIASTEELQKWSNKLRKSLGLSTQTLTNQETRQNSLNETYNGVDFSSNETI TNYTIYEANSITPRSSDSW >gi|300496688|gb|AEAT01000077.1| GENE 12 7828 - 9126 604 432 aa, chain + ## HITS:1 COG:TM1044 KEGG:ns NR:ns ## COG: TM1044 COG0675 # Protein_GI_number: 15643802 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Thermotoga maritima # 11 375 3 340 405 103 25.0 7e-22 MAEQVKEAPAELIQTRVYELRPNKTMRKVLDEACDYRRYCWNQGLALWNEMYKARQTLKS SLSTDSKKLTEEQKVLLKDKPSPSERRVRNMLVADKKDWQYTQSARILQLAISDLGKAWN NFFDKAQPGWGKPKFRSKREARQGFKSDQSKIKDGILYLERAKESSVPKDQWRGFKLSEK PLSDEFGVVSYFKEKGCYYVAIPYKIKAEDIKLPDKTGKATAVDVNVGHFDYTGGRMNLL PKKLDKIYGKIKHYQRQLAKKQVKNGEAACESENYLKTKAKLQACYRKASNIQNDLMQKF TTELVNNYDKIVIENLSVKGMLMSHVASKGVHRSMFGKFKQFLTYKCDWYGKELILANKL YPSTQRCAACGNVKKGDDKITLYGNKKHSTKHNEYVCYNQKCPNYNKVVDRDKNAMLSLL ALTEHPELNHAL >gi|300496688|gb|AEAT01000077.1| GENE 13 9448 - 11250 2970 600 aa, chain + ## HITS:1 COG:L166370 KEGG:ns NR:ns ## COG: L166370 COG1164 # Protein_GI_number: 15673709 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Lactococcus lactis # 6 599 5 597 601 532 46.0 1e-151 MESPYRSEVPKEQTWDLTRVFKTEADWEAAFKAVKQEIKALPALEDGFTESAAVLYDRLT QIFAVDRRLSKIYVYASMASDVDTSNQKKLALNSRGQSLAAEYQAAVAFIQPAVLALGKE GLDAFFKEEPRLENYRHYLEQIVKQEEHVLPAEEEKLVSAAGDALSASANTFNVLTNSDL QFPYIEDEDGEAVELTEANYDILIQSQNREVREDAFDALYAGYGQFASTFASTLAGNVKA HNFDAQTHHYQDALAAALSENNIPVDVYNQLLTSVHKHLDLLHRYVNLREEILDLKGDLQ MWDMYVPITGKPSLSYTFAEAKAQAREALQVLGEDYVKHVDYLFNNRCIDHVANMHKQSG AYSGGAYDTDAYELLNWQGDLDSLYTLVHETGHSVHSMYTRENQPYVYGDYPIFVAEIAS TTNENLLTNYFLDRVTDPKTRAFLLNYYLSSFKGTVYRQTQFAEFEKFIHESDQAGEALT ADYLCGFYDRLNQQYYGPAISLGSDIDLEWARIPHFYYNFYVYQYATGFAAATALANKIT YGSQEDKEKYLDFLKSGSSDYPINIMQKAGVDMTKSDYLEDAFKVFAERLDEFTDLIKKL >gi|300496688|gb|AEAT01000077.1| GENE 14 11320 - 12546 1782 408 aa, chain - ## HITS:1 COG:SP0715 KEGG:ns NR:ns ## COG: SP0715 COG1304 # Protein_GI_number: 15900612 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Streptococcus pneumoniae TIGR4 # 8 387 3 378 378 350 48.0 2e-96 MTHYIKGFPQSEADEDLKFVNVDELEEKAKEVMPEGAYYYVASGSEYEWTWRNNTTAFNH YQIVPRALTGMDNPSTETEFLGMKLKTPIMISPIACHGISHADAEVATQKGAALAGAMFT SSTYGNKPVEEIAAAAPDAPRMFQLYLSKNWDFNKMVFDAINAAGYKAILLTVDALVSGY REANLRTNFAFPVPLDFFTRFQGAKGEGQTVAQMYASSAQNIGPDDIKRIKEMSGLPVIV KGVNCAEDVEVALTAGADGVYVTNHGGREIDGAPATIDVLPEVVEAVNGRCPVIFDGGVR RGSHVFKALALGADLVGIGRPYLYGLALGGPHGVASVINELNDELKIDMQLTGCKTIEDV KHARLTDFQYAGDTKPSSTDPRVRKPYPVTAVNQIKSEPDAATGASHH >gi|300496688|gb|AEAT01000077.1| GENE 15 12676 - 14214 2455 512 aa, chain - ## HITS:1 COG:BB0604 KEGG:ns NR:ns ## COG: BB0604 COG1620 # Protein_GI_number: 15594949 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Borrelia burgdorferi # 5 503 6 500 500 306 39.0 6e-83 MWVKFIFALIPIVWLIISLTALKMPAAKAAVISLILAIILAITAFQLPVVDTLTGTLEGI LGGLFPIVYIIVAAMFTSKVTFKSGAMQKIQDMLCGLTTDKRVLVLLIAWGFGGFLEAIA GFGTAVAIPASILMTFGINPIEASVICLVANTTPTAFGAVGLPVITLAQTAGLDVMNTAF VVSLQLSVLILVIPYILVGLVGGGVKAIKGVGFITFMSGLAFALPQILVAKYVGAELPAI AGSIVCILVTALLAKRHKDVPEYSASTGDIAKHSAGELLQACAPFILVFVFVLAASSLFP AVNSLLNSATLKFQVYTGKNAGQFSLNWLSSPGTLILVATFIGAMIQGLSVKETFGILWD LIKGIGKTAVTISAIVALAKVMGYAGMTSAIAVVLVKVMGPVYPLIAPIIGALGTFVTGS DTSSNILFAKLQASAAQSLGVSQTWVVANNMVGATAGKMISPQSITVASTAIGQEGSEGT ILKQAFKWCGIYTAIICIFLYLVGLATGQLHF >gi|300496688|gb|AEAT01000077.1| GENE 16 14799 - 15050 225 83 aa, chain - ## HITS:1 COG:no KEGG:Ldb2036 NR:ns ## KEGG: Ldb2036 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 63 1 65 184 115 89.0 5e-25 MIYCANCGAKNQANATFCVNCGAKLVKPAQSSQPTQQVQPVKPAKTGKRRADLKQVRKWK KQIVQPLQEYYKANPDQGEQRRC >gi|300496688|gb|AEAT01000077.1| GENE 17 15187 - 15984 1193 265 aa, chain - ## HITS:1 COG:L165709 KEGG:ns NR:ns ## COG: L165709 COG1108 # Protein_GI_number: 15674095 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Lactococcus lactis # 1 254 4 259 269 95 32.0 1e-19 MFAYEFMRNAFWAATFIAITCGVVGVYVVARNFSFLAHTLSEIGFAGAAFAILMGLKPLT GMLIFALLGSVGVGELSMQTEQKESSISAISAFFVGLGILFLSLSSSASSYATNILFGSI IGVSRSSVYQLVGLSVVVLLIIFAIQRPLNYDSFDHIGAAAHHINTGFVGVVFLVALAMA VSIGSQVVGSMLVFVLLTMPSSTARYLGKSIPSMLAWSVGLALLGVWAGLCLGYITNWPV TFFISVIEVTAYLLVYFTQARKKRA >gi|300496688|gb|AEAT01000077.1| GENE 18 15984 - 16637 192 217 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 204 1 214 305 78 26 8e-14 MSKALQVVDLSMKFDDQEIFKKLNFSLETGSMTALLGPNGAGKTTLVRILIGMLSPSHGY FELADDVKVGYVPQFRNIDPDYPLSIKSFIELNTPFWKSQKVKAQVNNILQETHLKGLAD TRMGEASGGQKQRAYLAQALLDQPNFIILDEATASLDPKAKEELMSLIAHLNHEHKMTVL FVTHDIPLAKRYMKDYLYLSDGTVSQGKMEDFKESFN >gi|300496688|gb|AEAT01000077.1| GENE 19 16663 - 17463 1344 266 aa, chain - ## HITS:1 COG:STM0867 KEGG:ns NR:ns ## COG: STM0867 COG0561 # Protein_GI_number: 16764229 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Salmonella typhimurium LT2 # 2 263 3 263 271 139 34.0 5e-33 MIKLIATDMDGTWLNSKKEYDLDKFKQIMDLAREKGVKFVIASGNQYENLVTRFPKEYLS QLYFVAENGAYVLKGREILNIVDLNSDELATIHEIKEKYGQDHPTVLAGVNSAYTLQSYG EEFYNYLHLFYQELKAVDDYESVKDRIFKFTVATGEGESSAFAQQLKREFPSLDMVAGSD SAVDISKLGMNKAVGLKLLGKRYGIPADEMVAFGDGGNDVAMLQYVGQSYATATALPEAK RAANGIIGSSDESAVQDKVLDLLKKL >gi|300496688|gb|AEAT01000077.1| GENE 20 17730 - 19700 3296 656 aa, chain - ## HITS:1 COG:FN1441_3 KEGG:ns NR:ns ## COG: FN1441_3 COG1299 # Protein_GI_number: 19704773 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Fusobacterium nucleatum # 306 648 1 321 328 283 49.0 9e-76 MRIKDILNPESMIMDLQATTKDEAINEMADLEVATGIVNNKEKFVESIWAREKESTTGIG GGIAMPHARNEYINKARVLFAKSEKGVDYDSLDQQPVHLFFMITAPAGADNTHLQALAKL SSLLINPDLVEKLKAAKTADEVIDLFSQAEADKDKEDAEREAKLAAKKEAEAKAASDEKP LIVGVTACINGIAHTYMAEEALIKAGEKRGVEVRIETNGSEGVKHELTADEIKRAKGVII ASDKQVKMARFDGKQLVKHPVVDGINKPDQLIDEILSGKGSVYHAEAGEASESSAASDGS VWSTIYRHLMSGISHMLPFVIGGGILMAISFLVEQYMGGAKSPAFIFLNSAGNLAFAFMV PVLAGYIAESIGDLPALMPGFVGGFMASIANSSLGGSYAVNANAKAASPAGFLGGIAIGF IAGYLILGLKKLFAKLPKNVEGMKPMLLYPIFGLLFVALIMYYIINPVFGALNGVITNFL NGMGTGNLVLLTTILAGMMSIDMGGPFNKAAYVFASGAFANDPTSKTSAILMAAVMVGGM VAPFATAIATTFFKNKFTEDERRAGVSNWILGFSFITEGAIPFASADPLHVIVSSIVGSA VGGALVGLWHVGVPAPHGGFWVIALSSNWLGYLGAVAVGSIVAALMMGFWKKPIEK >gi|300496688|gb|AEAT01000077.1| GENE 21 19749 - 20663 1353 304 aa, chain - ## HITS:1 COG:lin2430 KEGG:ns NR:ns ## COG: lin2430 COG1105 # Protein_GI_number: 16801492 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Listeria innocua # 1 300 1 300 307 280 50.0 3e-75 MIYTVTVNPALDYVLQLPEVKDGETNRSSDTQFLAGGKGINVSQILNQLGVDNTAWGFVG GFTGEELIRQLNVKKISSDFVRISDDTRVNVKIHAQEETEINAAGPDITDQEVAAFKSRL DDLEAGDVVVLSGSLAPSLPTDFYESLLPLIREKGAEFVVDTTGEALLRTLKFNPLVIKP NHHELADLFDTSFSSTADMLEAAKKLQKLGAQNVMISMAGEGAYLVTADHVYHANAATGT AVNSVGAGDSMIAGFVGTWFEKHDAAEGLRVGSACGGATAFTEDIAIKSQIDAVLPQIKI DVVE >gi|300496688|gb|AEAT01000077.1| GENE 22 20663 - 21412 863 249 aa, chain - ## HITS:1 COG:BS_fruR KEGG:ns NR:ns ## COG: BS_fruR COG1349 # Protein_GI_number: 16078502 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 1 229 1 229 251 173 42.0 2e-43 MLTEERQQMIAHYVDEHQICRVTELCRLTSTSESTIRRDLSEMEDRGLLKRVHGGAQSLQ TFGQDVAQQIRFNLNKDDKLAIARLAARKVHPHDYLFLDAGTTIYEMVPFLKEISGLHVV TNGLETALALTDAGIDCCLLGGHVKRQTHAAIGAATVSRLQELNFNAAFIGANALSPAGF LTTPDTEEAAVKRTAIQQSQQAFVLIDRSKFNAVTFAEFAKTDQVTIISRLEAGDREKLP VNIQLEEAK >gi|300496688|gb|AEAT01000077.1| GENE 23 21575 - 22294 1139 239 aa, chain - ## HITS:1 COG:L92665 KEGG:ns NR:ns ## COG: L92665 COG1794 # Protein_GI_number: 15674208 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Aspartate racemase # Organism: Lactococcus lactis # 1 210 11 221 240 175 43.0 7e-44 MGTIATESYVRLINHRVKISKDQDYLNYILVNDAQVPDRTAYIKDHSQPNFFNALKEDVL GQAKLGPDFMVMPCNTAHYFYDDLAALTDIPFLHMMRIAVHQYVDQFPNSPKIGLIATEG SIYDHLYEDEIHRVGREVEFGGPEIQPMVTELIYRDIKEKGIVDKELYHEILRKMHDEYG CDVILLGCTELSLAQEQAPDHPYQVIDPQSIIADVSIELALAIRNGQDPRQACQKYLYD >gi|300496688|gb|AEAT01000077.1| GENE 24 22338 - 23888 2390 516 aa, chain - ## HITS:1 COG:SPy0388 KEGG:ns NR:ns ## COG: SPy0388 COG0769 # Protein_GI_number: 15674533 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 3 509 2 479 481 332 39.0 1e-90 MNISLNTCILILKEHHLLKSSAVQDTVQTRMEAVSYDSRDVQNNSLFFCKGAGFRPTYLT MAKENGAIAYVAEQPYPEGTGMHALIVRNVSKAMALLSAAFYRFPQDDLFLVGFTGTKGK TTSAYFLKGMLDQLNGGRTALLSSVDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNG MTHMVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCKLQLLVNSRK CIINAETDRFADVYAAATTTTNPDSIYLFARDGFENPDLKKPIDFRYKSVETDLAETKFT LTTASSKAHKLPISGEYTLQMIGDFNETNATGAIIGAGLAGMSYEDCAKGIRHVTIPGRM ETVTTQKHGLIVVDYAHNKASMLALMRFMRREFTNPRVIVVVGAPGDKGISRRPGFSESL TAEADKAYLTTDDPGFENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPNDVV LLCGKGADAFQKIRGVDTPYAGDIVIARQVVQELEK >gi|300496688|gb|AEAT01000077.1| GENE 25 23925 - 25124 1591 399 aa, chain - ## HITS:1 COG:CAC0565 KEGG:ns NR:ns ## COG: CAC0565 COG0642 # Protein_GI_number: 15893855 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 69 387 186 497 499 170 35.0 4e-42 MKPKQDKEKQVVQGKRPRVKLTAAEKSELFAEGVVTVIIMLLLNMSVIILYHLAVLQDKS LVNGIYFLKKTMTIGPGYHIWSWERIGIILMGIADVIVLYWRLIRRYHQMQLRHIISELH YIANGHFDHRISFSVNNDMQKVIDSINSLVDSTVGAINEEKAIEQSKDELITNVSHDIRT PLTSIIGYLGLLKNGAVTSQEDMLKYINIAYDKAEQMKSLANDLFEYTTLKSTKTKLNVT PINIKGMMEQVAAGFELEAEKKGIAFSVKARPDDLIVNADVEKLVRVYNNLISNALKYAA GASRINLVANLINHEQVELRVENNGEPIPKDKLKKIFDRFYRVESSRNTKTGGTGLGLSI VQGGVELHGGTIRCESNKDWTSFIILLPRDPQANLRPVV >gi|300496688|gb|AEAT01000077.1| GENE 26 25114 - 25800 1010 228 aa, chain - ## HITS:1 COG:CAC0830 KEGG:ns NR:ns ## COG: CAC0830 COG0745 # Protein_GI_number: 15894117 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 1 227 2 229 229 218 52.0 7e-57 MKILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTTPDIALMILDVMMPNLSG IDVVKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSR KQVKEEQPDVLEVGPLIINKDSHEVKTVEGKEIRLTALEFGILYLLASHPNRVFSADEIF ERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEEVIKTVWGVGYKVEA >gi|300496688|gb|AEAT01000077.1| GENE 27 25929 - 27773 213 614 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 379 591 283 502 563 86 29 3e-16 MTKKQAQQPSQMQTLTRLLKYVYRVSPAALIVSLVSVIISAAASVVGSLFIEQVIDRYIT PMLKQKSPDFGPLAHAVLLMAGVYAIGLVANYLFTLLMMVLSQQVQKQIRNEMFTHMQRL PIAFFDQNEYGDIMSRYTNDIDTLMQMISQALPMFANSVFSVVFVLAGMFYLSWQLTLVS LVVVLLSLGVVRYLTGKSSYYFDQQQKTVGTVNGYNEEMLNGLKVIKVFSHEPEAKADFD RYNDQLRIASSKANTYATILFPIMGNIGNLLYVLIALLGGAAILAGNIPLTLGALASFMQ LSKAFIMPIAQISQQLNAIVLAIAGARRIFQVLDEKVEVDDGQVTIEEKPGVKNAWQWKL PTENGFKYVPVKGHIVFDHVSFGYVPGKQILHDISLEAKPGMKVALVGETGAGKTTISSM INRFYEINSGTITYDGIDIKDIKKDDLRKSVSIVLQETHMFTGNIMENIRFGRPDASDDD VYQAARLARADEFIHDLDDGYETVIDGGGSDLSQGQLQLLSIARAMIADKPVMILDEATS SIDTRTERLVQAGMDNLLAGRTSFVIAHRLSTIVNSDLIIVLDHGRILEAGNHDQLLAKQ GYYYELYTGKKEIQ >gi|300496688|gb|AEAT01000077.1| GENE 28 27784 - 29511 219 575 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 350 556 37 249 329 89 29 6e-17 MLKTLLKSVRQYKKETLLSPLCVVVEVFIEMYIPYIMGLLIDNGINKGDMDYVRKMGLFT ILLTLVSLVLGASASYFSAHAAAGFTANLRQDMFYHIQDFSFENIDKFSSASLVTRLTTD ANNIQQAYQMSIRMAVRAPFMMIISLFMAVSISWRLTLIFLVAVPVLALAMILIIKNARP YFPRIFRAYDELNRKVRENIRGVREVKTYVHEEEQIENFEKSTSKIYKLFRRAMFIMAFN GPVMTMMIDAVMLALSWFGAKLIVGHQLATGQLVSMFSYTMSILMSLMILSMIFTQLMMA QSSGRRVADVLTAKPTIVNPAKSPLTSVTNGEVVFDHVDFKYNKEDAHYALKDIDLRIKS GETLGIIGETGSSKSTLISMIPRLYDVTGGAVRVGGHNVRSYDLKTLRDNVAVVLQKNVL FTGTIKDNLKWGNEKASDEEIVWAAKIAQADGFIREMPDGYDTMVEQGGNNVSGGQKQRI TIARALLKKPKILILDDSTSAVDTKTEREIREALKRDLPETTKIIISQRIVSIKDADRIV VMNHGKIEDVGTHDELIKRNDLYSSIAKFQEENSK >gi|300496688|gb|AEAT01000077.1| GENE 29 29650 - 30420 1245 256 aa, chain - ## HITS:1 COG:L196216 KEGG:ns NR:ns ## COG: L196216 COG4858 # Protein_GI_number: 15672175 # Func_class: S Function unknown # Function: Uncharacterized membrane-bound protein conserved in bacteria # Organism: Lactococcus lactis # 34 242 2 210 219 75 28.0 7e-14 MSEEKQVKNASQAELQKQGQAEAKTESIKQENPEELRGKLSNKNKDYIYRLKKELVAGGM SEGDADAQIDGLLPEIYDAQIKGQPANVLFDAAPKLKASQILHPVVKPERVPDKLVALDG ALFYTAMLTVLFGVLQLFTDNSKSTSSGSGILTLIVMGLAMGWYFTKYNTWMQPDPKTGK PAWGKVIWGLLGSLLIIMLIVFVLSIPALSVINPVLPGWADILVAAAAYGIRWLVRRHYG IEGTSLSPDKLTMKKK >gi|300496688|gb|AEAT01000077.1| GENE 30 30435 - 31535 1853 366 aa, chain - ## HITS:1 COG:SPy0006 KEGG:ns NR:ns ## COG: SPy0006 COG0012 # Protein_GI_number: 15674254 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Streptococcus pyogenes M1 GAS # 1 366 1 371 371 475 69.0 1e-134 MALTAGIVGLPNVGKSTLFNAITKAGAEMANYPFATIEPNVGMVEVPDKRLARIQELIPA KKVVHTTFEFTDIAGLVKGASKGEGLGNKFLENIRQTDAIVHVVRAFDDENITSVSGKVD PEEDIDTINLELIYADLDSVDRRIGKVQKMAQQKDKESMAEYNVLQKIKPVLEAGDPVRS IKFTDDEAKIVKGLFLLTSKPVIYVANIAEESMADPESDKYYQIVKAHADKEGAGCLGIS AAIEEEIAGLDDEEKEEMLAAEGVEESGLDRLIRAAYHLLGLRTFFTAGGKETRAWTFHQ GMKAPQVAGVIHSDFERGFIRAEVVSFEDLDKYESMQKIKEAGRVRLEGKEYEVQDGDII EFRFNV >gi|300496688|gb|AEAT01000077.1| GENE 31 31612 - 31875 412 87 aa, chain - ## HITS:1 COG:BH4052 KEGG:ns NR:ns ## COG: BH4052 COG4481 # Protein_GI_number: 15616614 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 7 66 5 64 65 84 55.0 6e-17 MTKNITFDLADTVEMKKPHACQINNWEVLRLGADIRLKCMGCGHVVMMPRADFNKKVKKL LAKSNDPVNLKNDFYVAKEDIARPNFG >gi|300496688|gb|AEAT01000077.1| GENE 32 31868 - 32758 1361 296 aa, chain - ## HITS:1 COG:BS_spo0J KEGG:ns NR:ns ## COG: BS_spo0J COG1475 # Protein_GI_number: 16081148 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 15 290 4 277 282 248 52.0 9e-66 MARDSRNKKQEKKGGLGRGLGALFEEEPQVKPAEEIEDLPLAEVRPNPYQPRKNFDEKKL AELAESIKENGVLQPIIVRRSVGGYEIIAGERRCRASELAGQATIPAIIRQFDESQMMEV AILENLQREDLTPLEEAQAYEMLQKNLGLTQEEVSKKMGKSRPYITNYLRLLTLPQKTKG LLQRGELSMGQARTLLGLKDKDRIDELAKRVVKEGMPVRKVEALVAKMNERGQKQKKKNA GKSAFVRASESQLAAKFGSPVSITENKTGKGHLSIDFASPDELNRILDLLGVNLDD >gi|300496688|gb|AEAT01000077.1| GENE 33 32736 - 33515 1054 259 aa, chain - ## HITS:1 COG:BH4058 KEGG:ns NR:ns ## COG: BH4058 COG1192 # Protein_GI_number: 15616620 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 1 250 1 250 253 323 64.0 1e-88 MGSVIAVANQKGGVGKTTTTINLAASIAKRGYKVLIVDIDPQGNATSGLGIEKSTIEYDI YNVLIDEIPIASAIKPTSSKKLDILPATINLAGAETELISMMARETRLKGAIEDLGDKYD FVFIDCPPSLGQLSINAFTASQSILIPVQSEYYAMEGLSQLLNTIRLVQKHFNKDLGVEG VLLTMLDARTNLGADVVQQVKEYFGDRVYKTIIPRITKLAEAPSYGEAITEYAPSSRGAK VYDDLAKEVLKAHGKRLKK >gi|300496688|gb|AEAT01000077.1| GENE 34 33517 - 34341 1204 274 aa, chain - ## HITS:1 COG:BH4059 KEGG:ns NR:ns ## COG: BH4059 COG1475 # Protein_GI_number: 15616621 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 10 269 20 283 283 226 51.0 4e-59 MAFGFFHRNEIPQNKQVQDLPLAEIHPNRYQPRRTFSDDSIQQLAQTLQEEGLLQPIIVR QDQGGYEIIAGERRFRAAKSLGWEKIPAIVNNLDDQQTASLALIENLQRENLNPIDEAQA YEQLMQLNDLTQTQLAQDIGKSQSYVANKLRLLKLAEPVQEYLAKGGLSARHGRAILGLS EEGQVKLAEEIVEKGLSVKETEERAAKLANPKPAVKKKAVVRYGRDMQLQINTIKQAVKL AKESGVKVKVTEAKSPDEYQITIVMKNQRKKKED >gi|300496688|gb|AEAT01000077.1| GENE 35 34360 - 35079 841 239 aa, chain - ## HITS:1 COG:SPy0329 KEGG:ns NR:ns ## COG: SPy0329 COG0357 # Protein_GI_number: 15674490 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Streptococcus pyogenes M1 GAS # 1 239 1 237 237 252 55.0 5e-67 MNPELFTETLSKYNFKLSPVQEQQFKTYFKELVRVNEHVNLTRITDEDEVYLKHFYDSVT PLLLWPEVFAEGAKLCDVGAGAGFPSLPIKILRPDLEVTIVDSLGKRLNFLSDLLEKLGI EGVNLVHGRAEDVGQNPDYREKFDLVTARAVARMSVLSEYCLSLAKVGGKFLALKGPRAD EELEDAKSALEKLGGKAVFSRVITLPGSAEERTLVLVDKVKATPGKYPRQAGTPNRKPL >gi|300496688|gb|AEAT01000077.1| GENE 36 35251 - 35775 967 174 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1902 NR:ns ## KEGG: LDBND_1902 # Name: not_defined # Def: membrane ancor connecting MutS2 with cell-division z-ring # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 174 1 174 174 288 99.0 8e-77 MLLVIFVILYIAWQTYKGYHVGFSKRIVNLIFAGLVFMLAIMLQNPVGDLIYTQFIQGQA GDSSLVLHACRFGAFFALFFILKQISKIFKAWLPAQETKTGFTATLDHMAGAIVSFVASY FFMYVVLSILNSVGISQLSQLISDSQLLSFIVNDTPGLSTGVFKTLFSVSRTTA >gi|300496688|gb|AEAT01000077.1| GENE 37 35821 - 36780 1718 319 aa, chain - ## HITS:1 COG:L171943 KEGG:ns NR:ns ## COG: L171943 COG1477 # Protein_GI_number: 15672350 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Lactococcus lactis # 1 317 1 310 325 317 49.0 2e-86 MGIIKYISTDQVMAQHKAMGTHISLQIYGAREDPEKILDQTKVLIDHFEDLLTVNRKPDH LRYGLSEVTRVNDQAGKEAVQVSSSVYGLIKLAVETSRENFGFNALIGPLVKLWSIGFQD ARVPSDAEIQEKMKLIDPWMVELNDDDHTVFLKQEGMELDLGGIAKGWTADRIRDLWRAY GVEAGIINLGGNVLFVNPCPKRTNGMWTVGVQDPLKPRGENITAMMIPECSVVTSGTYER FLEVDGHKYHHLIDSRTGYPVETNIAGVTTFTKNSVDAEIECKRCFFAGQPIANWVNDRR LGAIYVYNDERVEKVGLDY >gi|300496688|gb|AEAT01000077.1| GENE 38 36792 - 37574 939 260 aa, chain - ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 6 258 46 297 298 113 29.0 3e-25 MAEELLPLKTVRNPRDLGGYTGFAGRKIKAGLLLRTGTVATISEEDGNYLRARGVKTIID LRSPQECRKRPDKKLAGIQNVNIPVNSRDQTKAGASLAELARQYGLDPLAGFRHMVESYR LMVTEEHAQAAFGQVLAYLAETEGGTIYHCSEGKDRTGLVTVFLLTVLGVDPETIRQDYL LSAPYLNGYRAKRDKEARENGESLVQRANLRSLGTVNNEYLDSALITIDQEYGGMEAFLT RQLGVTPVLRDQLRAKYLEE >gi|300496688|gb|AEAT01000077.1| GENE 39 37668 - 38216 704 182 aa, chain - ## HITS:1 COG:SP1471 KEGG:ns NR:ns ## COG: SP1471 COG0431 # Protein_GI_number: 15901321 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 182 2 181 201 144 46.0 6e-35 MKLLAIVGTNADFSFNRLLCQFIAKRFGDKAEIEVAEIGDLPAFYKEGQADARVAAWREK VDQADGLIIATPEYDHAIPAALKSALEWLGSHAGSKVMAYKPVCVVGVSLGGQGASRAQE DAREILLSPDMTANVLPGNELLIGQAYSSFDKESGDLVDEASIAQLDKVMEAFFAFVAQA KK >gi|300496688|gb|AEAT01000077.1| GENE 40 38233 - 38772 698 179 aa, chain - ## HITS:1 COG:SP1472_1 KEGG:ns NR:ns ## COG: SP1472_1 COG0431 # Protein_GI_number: 15901322 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 179 1 181 187 143 39.0 2e-34 MKVLALNGSNADKSYNEMLLKFIAKHFADKYDFEFATVKGLPMFKEGQEDPADVAKLSDQ VAAADLVLIGSPEQQHSVTSALKSALEWLSTNTHPFNGKPVVIVSTSPLAQGGARSQTKL KTILASPGLHPVVFNDDEFMMGGAATAFDENGDLKIPGTVDFLEHFFDEVDAWYAQITK >gi|300496688|gb|AEAT01000077.1| GENE 41 38900 - 39445 764 181 aa, chain - ## HITS:1 COG:FN1004 KEGG:ns NR:ns ## COG: FN1004 COG1309 # Protein_GI_number: 19704339 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Fusobacterium nucleatum # 1 173 1 172 188 68 27.0 5e-12 MARRKEIDRERILDIAYKKALTDGIENLTARSIAQTGHFSTQPIYLEFKNMDGLRKEVLK RVSCTLRDEILQKKFIGEPLYDVDLSYLQFARDHRSLFSTIFVNGEFGDDLIRDTLMDLG HTKLREQYQRDLDPELEKWLIALNWIIVNGLAVMLVDGLIDYDQDNFVRIIKRQLESLFD R >gi|300496688|gb|AEAT01000077.1| GENE 42 39724 - 41124 2115 466 aa, chain + ## HITS:1 COG:SPy0713 KEGG:ns NR:ns ## COG: SPy0713 COG4690 # Protein_GI_number: 15674771 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Streptococcus pyogenes M1 GAS # 6 452 7 467 472 302 37.0 1e-81 MTTHGRSSCTSILIGKKASLDGSVIIGRNEDSRTAWPKHLAFHQRQAGAQTFKSHDNKFT IDLPKEAFAYSSTPEWTKKYGLFEEDGINEYHVAMSATESAYANERVLAIDPFDAEKGLL EEAMVTIVLPYVKTAQEGVKRLGEIVEKYGAAESNGILFADRDEAWYLEIGSGHHWVAQR IPDDSYTVVANQLSIQEIDFKDPANFLYSAGLQEFVYEHQLWPKEAKFNWREIFGTRSES DLHYNTPRVWYGQKLLTPSVKQEPQSFDLPFIQKADRPLSVQDAQTVLASHYSDTEYDLT NPKNAGQASFRPIGVATTQESHLLQLKGEDMYHWLAMGVTAQSVYIPFFPQGTKVPYMWG NGKVDYSPNSAYWIFKLAGVLVDRNWGKYGKELANAQTEAKEKVLRLRHEYDQKLHADPS QATAIADEANAKMAKTVTDIYNKLISNLITQQTGDSPLSFQMDPNL >gi|300496688|gb|AEAT01000077.1| GENE 43 41203 - 41664 376 153 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1911 NR:ns ## KEGG: LDBND_1911 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 3 153 1 151 151 226 96.0 2e-58 MKLKHKGIWFSVILLLCLLGLFLSKKHIDQVYRNLQVAQTEVSQTAYSKVSQNLAVKSGQ GKTEGGNYLATIYVKAKTGQKLSRNDFYLYRGLKEGATMIDSLKINGQATSRLRSGVNKV QVKAPKNGNEQYLYLLVNPQKGKYVKYHFNLQK >gi|300496688|gb|AEAT01000077.1| GENE 44 41648 - 42310 204 220 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 209 1 215 305 83 25 3e-15 MMKIIEVDHVTKRFKNKLALNDVSFSIDAGKIYGFRGPNGSGKSVTFKTVLGFIRPNSGT VKVLGKKIRQDVIFAPDTGFAISEYGLLEDKTGLENLNLLKVLNDDQSSQAEAILQRVGL DPANPLKLKEYSLGMRQRLLIAAALLGDKQILLFDEPTNALDEDGQDFLAQLLLELKDQG KTILVSSHDKDFLNQVADHIFVYSEGKIVKELEQDHEVEA >gi|300496688|gb|AEAT01000077.1| GENE 45 42314 - 42958 388 214 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1913 NR:ns ## KEGG: LDBND_1913 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 214 1 214 214 316 95.0 4e-85 MLNKTLLTRNLQLYWHNIKFRFLIVYPAMLLLLTFKSWQGMAGIRLFSGVLQVPGAIVFP FDWLFIMLAVFLIIGDSPRELFLKDYPIVSRVPAGSYLATIYFMNASLTVMIWLTWQLFG GLPLIFSLEMLLIFLALTALYASLQFFISSLLDLGLYAAVFILAILVNQLPFLSSLMYLR YSAHWADGLLGSGLCLLAAWILSRMIKYIDFSLE >gi|300496688|gb|AEAT01000077.1| GENE 46 42951 - 43649 404 232 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1914 NR:ns ## KEGG: LDBND_1914 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 231 1 231 232 329 96.0 5e-89 MSLVNYLRQKSGSWLAIKSILFVLVWTGVYTILILSNAKIVEPGTPALSNARLTVSNLHN QLYFFAPLLIVSSLLFFSRPQSVEFFYLTLKKRLRQYLLIYTILETILLISSFLLSFVIS AFVTKAPLASQIGLETLLLLAHYLGVFALLFFLETAIFLAGKLRAGAAIEALLLLDAFCL DRLGWSVFLNHGLAIVPGQGFFVTAPAVYLAYDLLLYYYLASRAFYQEVKYA >gi|300496688|gb|AEAT01000077.1| GENE 47 44605 - 45102 685 165 aa, chain - ## HITS:1 COG:SP0577_3 KEGG:ns NR:ns ## COG: SP0577_3 COG2190 # Protein_GI_number: 15900487 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Streptococcus pneumoniae TIGR4 # 17 138 20 143 166 114 45.0 6e-26 MFRIFDLLKSRARLSKVLAPVQGRLFPLEDVNDEIFASKGLGEGFAVQPSSDLIYAPLNG TVTSLFPTNHEIGIRTKEGLDLLIHLGLNTVELGGVGCDILVEAGQEVKKGQLLATMNRK LLRGLGYDDTVIVTYTNDQILKGVSAPVFFREINAKRAVQTISYH >gi|300496688|gb|AEAT01000077.1| GENE 48 45209 - 45508 116 99 aa, chain - ## HITS:1 COG:no KEGG:Ldb2066 NR:ns ## KEGG: Ldb2066 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 92 1 92 96 169 96.0 5e-41 MSTTAKLIYGYLIRPAQKRYKDEAGRVDEENDFLAKISQSCLINLKNVAAINLRKRTIVM LNGEILSFSRRFRHEMDKLVDEYNWKVEMAAKTAAPLGK >gi|300496688|gb|AEAT01000077.1| GENE 49 45899 - 46291 496 130 aa, chain - ## HITS:1 COG:no KEGG:Ldb2067 NR:ns ## KEGG: Ldb2067 # Name: not_defined # Def: FMN-binding protein # Organism: L.delbrueckii # Pathway: not_defined # 1 130 1 130 130 254 100.0 7e-67 MLEESTTLTQNFLEVISDPQPVTIVSYQASPAHVVNTWSSYIKVVDDSTFLVPAAGMRSI EADIAAQNSQLILTFGSMKFEGTEGPGRGYHVYATGEFVEAGEYFDLMKADLPWLRKVLV VHVQEVKQKI >gi|300496688|gb|AEAT01000077.1| GENE 50 46332 - 47309 776 325 aa, chain + ## HITS:1 COG:lin0383 KEGG:ns NR:ns ## COG: lin0383 COG2378 # Protein_GI_number: 16799460 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Listeria innocua # 18 324 1 310 315 141 26.0 2e-33 MKRRQFTAPFSKNKEKKLKKSERLNQELIFLSDKKRFNLQDLMDNFQISKRTALRDVASL EELGLALYAEAGRAGGYSLIQEDLLTKIYFNSDEVAAIFFALKAMEQLKETPFNESFQMI SQKLLKNLAASRQQQALASQAAVSFFNPPAVHHNPYLRLLMESILHDSLVRANFKGQQVL LQPCQLFFRDGNWLFAAYDLVGQAFWNYRCDQLQDCTEQAAVPNKLSLAELKQKQLEFEH DNSGQEFKILLNHRGQEHFLKNLYPNMQLEHEGGTTYLTGSYTPRTFEYLIDYLLTFGLN AKIITPEELRRSFKERLAAILDQYS >gi|300496688|gb|AEAT01000077.1| GENE 51 47623 - 48297 311 224 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 223 2 220 245 124 34 1e-27 MAAIEIKNVKKVYGQGDAATVALKGVDFSADTGNVVLLMGPSGAGKSTLLTIMGALQTAT SGKVEIDGQDISRLKEKDRSRLRLNKLGFILQAYNLVPYLTVKEQFQLVDKVKKTGNLRQ EELKDLLADLGIENLVKKYPENLSGGQKQRVAIARAMYANPKILLADEPTASLDSERVEE VGRLFKKLAKDDRKAIILVTHDPRLEKYADHIYDMMDGQLSQRK >gi|300496688|gb|AEAT01000077.1| GENE 52 48299 - 49357 1760 352 aa, chain - ## HITS:1 COG:L130944 KEGG:ns NR:ns ## COG: L130944 COG0577 # Protein_GI_number: 15674237 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 1 351 2 357 357 219 35.0 6e-57 MFLALKEIKHEKMRYGLIVFMIFLIAYMILATWGLAYGLARENTVALEGWQTKSVVLNKN ANLFMNSSILTKDDLKKIDLTDKEAVVGELQVVAKKKGKTGINAQYMGVKKGEFIYKDQD VIAGRRAKSKYEVTADSSFKDKGYKLGDKVTLNGSDHKYTIVGFVKDAKINIEPIMYGFL PAWKELKNVAPGIEASGIISQRKLSVKGKNFKTYGIKEFTQKLQGHSEQNLTFELMIAFM FIISLAIVAVFLYILTIQKLPNYAVLRAQGVPAKTLIWATVSQSLLLVTSALVLALLAIW GTAAAIPASVPMAFTPGIFVATIGGMLAMGLLGGLNPVRTILKIDPVQAIGG >gi|300496688|gb|AEAT01000077.1| GENE 53 49400 - 49906 995 168 aa, chain - ## HITS:1 COG:L53789 KEGG:ns NR:ns ## COG: L53789 COG1309 # Protein_GI_number: 15672643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 72 1 72 189 66 44.0 3e-11 MVKATFENLSKDKQDRVTEALLKEFSAHTLASAQVARIVKEAGIARGAFYKYFEDLTDAY QYLFKLAMRDLHTGLTGRMGADELYQMTKDFVTKATGSQYYDLIRLHYAANEALLPSSRP NKQMPACAWAAMALSHEAIKEALLDPDKADFYLDREHEALEKLFSQHK >gi|300496688|gb|AEAT01000077.1| GENE 54 50218 - 51621 2313 467 aa, chain - ## HITS:1 COG:CAC2542 KEGG:ns NR:ns ## COG: CAC2542 COG0277 # Protein_GI_number: 15895804 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Clostridium acetobutylicum # 2 463 4 465 467 397 42.0 1e-110 MEYHKLTAEDIENLRPMIADPERFITEVTEHWDHDQFKTVRAMPDLVIQPTTAEEVASVL KYASDHEIALTPRGNSTGLMGANLTVHGGISLDMVKMNKVIDYDPASLTITVQPGIRLNQ LEEFLADKPFTYMPAPAMHWATVAGNISTNAGGLKAIKYGVTREHIREVKVALTDGKVYK FGSKSVKSSSGYSLKDLIIGSEGTLGVITEAVLRLYPRPKHALNAIIPFPTLDDAIQSVP AILASGVVPTTVEYMGRKVLNLWEKYYDATFPIKEGDGFIILGIDSFTASDAEAQLAQAL EAVKPFHALKETVLNAESDEAKTIWDAREKLLLAIQKSTPKMDEVDVSVPINKIPLVLHR IEELEKEEDMRIPNFGHAGDGNLHIYLCSDDMTDEEFAKKGDTVISELYKTAKSVDGNMS GEHGVGYARQNYYEDFYGKDYTDLLRKVKGLFDPKGILNPDKIFPLD >gi|300496688|gb|AEAT01000077.1| GENE 55 51802 - 52539 748 245 aa, chain - ## HITS:1 COG:PA3539 KEGG:ns NR:ns ## COG: PA3539 COG3022 # Protein_GI_number: 15598735 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 1 245 1 256 259 126 36.0 3e-29 MKIVISPAKKMQTDGGFLPKSQPVFLDQAEELWSYLHSLDQADLEKVWRANAKITEEARQ MLAADLTQPQVPALFAYSGLQYQYLAADVLDEAGLDYLDQHLRVLSGLYGSLRPFDGIVP YRLEMKSPLPAFKYKSLYEFWGEKVYQELYQDDSVVLNLASKEYSHLLTPFLKEGDRLLE VVFQEEKNGKWRTQATHAKMARGRLVRWLAEGGRDLSDLPDFTDFGYAFAPDQSGKDRVV FRKKA >gi|300496688|gb|AEAT01000077.1| GENE 56 52604 - 53239 849 211 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1927 NR:ns ## KEGG: LDBND_1927 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 211 1 211 211 404 99.0 1e-111 MINPDFAIILNFNPTGANVNADALVRRARDIGARAVSGREELRAACEKYTIAYLPDQAGQ HYKADEVVDALLAARKAGQALVVDVDGEDEADQAALDALNAWMHKFGHAVNEGQESDLSA DAAEAFVLTNRHAPYQAYLFLKAPYPAEVKVTGLTEAPNRIEWIDGREECEFVFENGVLT VQLKKQESPFAWQLVRIQGHRPEDDIAETKF >gi|300496688|gb|AEAT01000077.1| GENE 57 53333 - 54544 2070 403 aa, chain + ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 193 403 271 465 466 120 38.0 6e-27 MTSRKDYRKKNTQGSKYLIIAGVAVIVLACAGIWGHNAYQQHQATVLAENKKQVAYNKKH FNANVTIYGVKVGKLTVDQAVEKIQAKAVNKLVYKDGKISAVRDSKLTTISKEQVQKYFD KQYTQLPTDQSYNYENTALKKGKSKLKAITAASVDYSVAGKTFTLAAKDYLTQVSYYSGA VHYDDASKLTAKLNAMDKEVKTLGKSYKFKTPAGSTITVTNQSYGWGIWTASAKKAVLSA YETGKKTIDGKNHIYGEGYTTQGLGYGKSNNGLGNSYVVVSIASQDMWVVVNGKVVVTVS DVVTGTANKGDNATPTGVWYIMYKQKDATLRGQNDNGSNYASKVSYWMPFTMSGCGLHDA SWRTDWSSTAYLKGGSHGCVNIRPSEIKSVWDAVKLHMPVIVY >gi|300496688|gb|AEAT01000077.1| GENE 58 54615 - 54800 296 61 aa, chain - ## HITS:1 COG:no KEGG:LBUL_1920 NR:ns ## KEGG: LBUL_1920 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 12 61 1 50 50 66 98.0 4e-10 MKMKHAKRIALLLALGYAGGQALKRSAPFLKGVQAGILMEKGKRKLKESEPVQKLKELAD K >gi|300496688|gb|AEAT01000077.1| GENE 59 54972 - 55604 855 210 aa, chain + ## HITS:1 COG:BH3859 KEGG:ns NR:ns ## COG: BH3859 COG0778 # Protein_GI_number: 15616421 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Bacillus halodurans # 2 188 7 192 212 175 45.0 6e-44 MNNDFKDIMQNRKSIRHYDSSVKISRDELLEIINESISAPSACNLQSWHFVIVDTPEGKK KLHDFLMPFNYPQVDTAPATIMVFGNTKSYLKYRDLWNGMVEEKKVTPEARDAAVNTFLP LYEKADRQMLVADAMVDASLVAMQLMLVAREHGYETNPMAGYDASKAAAQFGLDPEQYIP VMAISIGKPDPSEVVPDTVRYDVKDVTEFA >gi|300496688|gb|AEAT01000077.1| GENE 60 55676 - 58207 3699 843 aa, chain - ## HITS:1 COG:L102360 KEGG:ns NR:ns ## COG: L102360 COG0308 # Protein_GI_number: 15672287 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Lactococcus lactis # 1 843 1 845 846 815 49.0 0 MAVKRFYETFHPDHYDLYIDVDRAARSFSGTSTIHGEIQEETVLVHQKYMTISKVTVDGK EVPFTFGDDFEGIKIEAGKTGEAVIAIDYSAPLTDTMMGIYPSYYQVDGVKKELIGTQFE TTFAREAFPCVDEPEAKATFSLALKFDEHEGETVLANMPEDRVENGVHYFKETVRMSSYL VAFAFGEMRSLTTHTKSGVLIGVYSTQAHTEKELTFSLDIAKRAIEFYEDFYQTPYPLPQ SLQLALPDFSAGAMENWGLVTYREAYLLLDPDNTTLEMKKLVATVVTHELAHQWFGDLVT MEWWDNLWLNESFANMMEYLSVDHLEPNWHIWEMFQTSEAAAALTRDATDGVQSVHVEVN DPAEIDALFDGAIVYAKGSRMLVMVRSLLGDEALRKGLKRYFDEHKFGNAAGDDLWDALS TATDLNIGEIMHTWLDQPGYPVVNAFVEDGHLKLTQKQFFIGEGKEVGRKWEIPLNANFK APKIMSDVELDLGDYQALRAEAGHALRLNVGNNSHFIVKYDQTLMDDIMKEAKDLDPVSQ LQLLQDLRLLAEGKQASYADVVPVLELFKNSESHIVNDALYTTAAKLRQFAPAGSQADKN LRALYNDLSKDQVARLGWLPKAGESDEDIQTRPYVLSASLYGRNADSEKQAHEIYVEYAD KLAELSADIRPYVLINEVENYGSSELTDKLIGLYQATSDPSFKMDLEAAIVKSKDEGELK KIVSWFKNAEIVKPQDLRGWFSGVLSNPAGEQLAWNWIRDEWAWLEKTVGGDMEFATFIT VISHVFKTQERYDEYNAFFTDKESNMLLNREIKMDRKVIANRVDLIASEQADVNAAVAAA LQK >gi|300496688|gb|AEAT01000077.1| GENE 61 58616 - 59434 1295 272 aa, chain + ## HITS:1 COG:no KEGG:LBUL_1924 NR:ns ## KEGG: LBUL_1924 # Name: not_defined # Def: membrane protease family stomatin/prohibitin-like protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 272 1 238 238 129 75.0 1e-28 MTFKHNFKKVLSATAFAAALVVAPAANVSAATNDASSTQQSATATSQDQQASQDQAASQS SAANQSSSTSTSSATSTSTVKKVAKKTKKTSKKKAVKKVAKKKATKKAKKTSKKSTKKTT KAATAAVTASADQSQATDQQDDAAKKAAEAAAKKAAAAKKAAAKKAAAKKKAAAKKKAAA KKAAAKKKAAAKKKAAKKSAEKAAKYWIAMRESGGYYTARNGSCYGRYQLLISYLGGDLS KKNQERTADRYVYGRYGSWVNAKRFWLAHNWY >gi|300496688|gb|AEAT01000077.1| GENE 62 59605 - 60552 1504 315 aa, chain + ## HITS:1 COG:L0037 KEGG:ns NR:ns ## COG: L0037 COG2390 # Protein_GI_number: 15673169 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Lactococcus lactis # 4 307 3 306 309 187 35.0 2e-47 MQLSNDQLANIAHDYYISKLNIAEISAKYNLSRYLIDKALSDAEKTGIVQINIKEGAKRN SGLEKSFRQQFGLKEAFILKKLETKNQDSEKIVSFAAEQIQSYMQSSKKVGITWGTTMLD IINSFTEVKNDDLTFVQLVGYPLQGNGRKNPLESIAAAQCGGHFRALPAPLYSSNPDLVN LIKKEPFYEQLDELYDNMDLLVASLGTLQAFEEESFLHEKYESLLFKNIHQKSISGMIFG RPYDHEGHFFSSITDKIIGISDQQIVKTPVRFVVVNDRFKSEALLGALKSGIITHLVTSE TIADRVLQLQEESGR >gi|300496688|gb|AEAT01000077.1| GENE 63 60829 - 61569 1195 246 aa, chain + ## HITS:1 COG:SPy0713 KEGG:ns NR:ns ## COG: SPy0713 COG4690 # Protein_GI_number: 15674771 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Streptococcus pyogenes M1 GAS # 24 229 9 214 472 179 44.0 3e-45 MRKFIWAAGALGLAAAFTATPVKACTTVVVGKKATTDGSTLVARNEDVGAWSKHFYVHQA TSNGPTTYVSEDNGFKTSLPKTALRYTSTPDGEQVNGQWIFGESGINSENAAMSATESGT TNKKGLKADNLVKNGISEASMLDVILPYIHSAKEGVQRLSQIVEKQGSAENNGVSFSDKN EIWYMEIGSGHTWAAVRVPDNKYAVIPNQMVIGKLNLKDSKNYMASTNLVKKVKAWSQNK KIKLDM >gi|300496688|gb|AEAT01000077.1| GENE 64 61641 - 62357 1419 238 aa, chain + ## HITS:1 COG:L324 KEGG:ns NR:ns ## COG: L324 COG4690 # Protein_GI_number: 15673540 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Lactococcus lactis # 2 221 255 460 474 94 33.0 2e-19 MWDGQRILTPSKKQSITKKSYTLFLKPDKKVSPAKVGQVLSSHFTGTKYSSYGKWKGGYR PINVPTDVESHILQIRNNVPKEYAAIQWLAMASPANSVYLPFYTNISDTPSQYKVDGDYQ DPTNTKSAYWTYKTTAMVVEAYKHKKFIDSSTGKKTDLIYKDVNPTKKAVTKQLKANLAQ SDKVAKTLSGDKLTAYLTEQNQKNADYAQKKWQTMNNSLIVHSNKLAPVTKSKLTFNK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:30:24 2011 Seq name: gi|300496636|gb|AEAT01000078.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00089, whole genome shotgun sequence Length of sequence - 36644 bp Number of predicted genes - 53, with homology - 53 Number of transcription units - 11, operones - 6 average op.length - 8.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 51 - 776 1068 ## COG2188 Transcriptional regulators 2 1 Op 2 . - CDS 819 - 1886 1016 ## Ldb0448 hypothetical protein 3 1 Op 3 . - CDS 1901 - 3013 1378 ## Ldb0447 hypothetical protein - Prom 3037 - 3096 3.8 - Term 3088 - 3136 8.5 4 2 Tu 1 . - CDS 3159 - 4766 2769 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 4799 - 4858 4.6 - TRNA 5048 - 5119 63.5 # Gln TTG 0 0 - TRNA 5125 - 5206 67.2 # Tyr GTA 0 0 5 3 Op 1 . - CDS 5282 - 6337 1815 ## COG3641 Predicted membrane protein, putative toxin regulator 6 3 Op 2 . - CDS 6324 - 7505 1847 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 7737 - 7796 2.9 - Term 7642 - 7693 9.6 7 4 Tu 1 . - CDS 7830 - 8000 167 ## LDBND_0386 hypothetical protein - Prom 8219 - 8278 5.2 - TRNA 8120 - 8191 63.5 # Gln TTG 0 0 - Term 8079 - 8112 5.2 8 5 Tu 1 . - CDS 8290 - 8781 749 ## COG1881 Phospholipid-binding protein - Prom 8858 - 8917 5.7 + Prom 8800 - 8859 6.6 9 6 Tu 1 . + CDS 8884 - 10053 1920 ## COG2814 Arabinose efflux permease + Term 10093 - 10121 1.0 - Term 10080 - 10108 1.0 10 7 Tu 1 . - CDS 10113 - 10733 754 ## COG1051 ADP-ribose pyrophosphatase - Prom 10767 - 10826 4.0 - Term 10785 - 10835 4.2 11 8 Op 1 . - CDS 10852 - 12483 2733 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 12536 - 12595 3.9 12 8 Op 2 . - CDS 12706 - 13188 527 ## LDBND_0381 hypothetical protein - Prom 13243 - 13302 10.8 - Term 13407 - 13439 2.4 13 9 Op 1 59/0.000 - CDS 13536 - 13931 662 ## PROTEIN SUPPORTED gi|104773575|ref|YP_618555.1| 30S ribosomal protein S9 14 9 Op 2 7/0.000 - CDS 13944 - 14387 751 ## PROTEIN SUPPORTED gi|104773574|ref|YP_618554.1| 50S ribosomal protein L13 15 9 Op 3 8/0.000 - CDS 14493 - 15167 846 ## COG0101 Pseudouridylate synthase - Term 15216 - 15244 1.6 16 9 Op 4 34/0.000 - CDS 15281 - 16078 1060 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 17 9 Op 5 15/0.000 - CDS 16071 - 16955 378 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 18 9 Op 6 6/0.000 - CDS 16910 - 17758 1028 ## COG1122 ABC-type cobalt transport system, ATPase component - Prom 17783 - 17842 5.5 19 9 Op 7 50/0.000 - CDS 17948 - 18331 627 ## PROTEIN SUPPORTED gi|104773569|ref|YP_618549.1| 50S ribosomal protein L17 20 9 Op 8 32/0.000 - CDS 18355 - 19293 920 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 21 9 Op 9 48/0.000 - CDS 19337 - 19726 643 ## PROTEIN SUPPORTED gi|104773567|ref|YP_618547.1| 30S ribosomal protein S11 22 9 Op 10 2/0.000 - CDS 19755 - 20105 584 ## PROTEIN SUPPORTED gi|104773566|ref|YP_618546.1| 30S ribosomal protein S13 23 9 Op 11 . - CDS 20131 - 20247 213 ## PROTEIN SUPPORTED gi|58336652|ref|YP_193237.1| 50S ribosomal protein L36 24 9 Op 12 6/0.000 - CDS 20262 - 20483 302 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 - Term 20494 - 20531 -0.0 25 9 Op 13 28/0.000 - CDS 20559 - 21212 919 ## COG0563 Adenylate kinase and related kinases 26 9 Op 14 53/0.000 - CDS 21223 - 22518 712 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 27 9 Op 15 48/0.000 - CDS 22518 - 22958 721 ## PROTEIN SUPPORTED gi|104773561|ref|YP_618541.1| 50S ribosomal protein L15 28 9 Op 16 50/0.000 - CDS 22979 - 23164 291 ## PROTEIN SUPPORTED gi|104773560|ref|YP_618540.1| 50S ribosomal protein L30 29 9 Op 17 56/0.000 - CDS 23176 - 23688 837 ## PROTEIN SUPPORTED gi|104773559|ref|YP_618539.1| 30S ribosomal protein S5 30 9 Op 18 46/0.000 - CDS 23705 - 24064 578 ## PROTEIN SUPPORTED gi|104773558|ref|YP_618538.1| 50S ribosomal protein L18 31 9 Op 19 55/0.000 - CDS 24091 - 24621 882 ## PROTEIN SUPPORTED gi|104773557|ref|YP_618537.1| 50S ribosomal protein L6 32 9 Op 20 4/0.000 - CDS 24646 - 25044 657 ## PROTEIN SUPPORTED gi|104773556|ref|YP_618536.1| 30S ribosomal protein S8 33 9 Op 21 . - CDS 25067 - 25252 338 ## PROTEIN SUPPORTED gi|104773555|ref|YP_618535.1| 30S ribosomal protein S14 34 9 Op 22 48/0.000 - CDS 25267 - 25809 891 ## PROTEIN SUPPORTED gi|104773554|ref|YP_618534.1| 50S ribosomal protein L5 35 9 Op 23 57/0.000 - CDS 25829 - 26068 373 ## PROTEIN SUPPORTED gi|116513550|ref|YP_812456.1| 50S ribosomal protein L24 36 9 Op 24 50/0.000 - CDS 26085 - 26453 593 ## PROTEIN SUPPORTED gi|116513549|ref|YP_812455.1| 50S ribosomal protein L14 37 9 Op 25 . - CDS 26484 - 26750 443 ## PROTEIN SUPPORTED gi|104773551|ref|YP_618531.1| 30S ribosomal protein S17 38 9 Op 26 . - CDS 26769 - 26966 313 ## PROTEIN SUPPORTED gi|104773550|ref|YP_618530.1| 50S ribosomal protein L29 39 9 Op 27 50/0.000 - CDS 26956 - 27399 760 ## PROTEIN SUPPORTED gi|104773549|ref|YP_618529.1| 50S ribosomal protein L16 40 9 Op 28 61/0.000 - CDS 27399 - 28070 1115 ## PROTEIN SUPPORTED gi|104773548|ref|YP_618528.1| 30S ribosomal protein S3 41 9 Op 29 59/0.000 - CDS 28084 - 28437 561 ## PROTEIN SUPPORTED gi|104773547|ref|YP_618527.1| 50S ribosomal protein L22 42 9 Op 30 60/0.000 - CDS 28459 - 28734 468 ## PROTEIN SUPPORTED gi|104773546|ref|YP_618526.1| 30S ribosomal protein S19 43 9 Op 31 61/0.000 - CDS 28752 - 29588 1435 ## PROTEIN SUPPORTED gi|104773545|ref|YP_618525.1| 50S ribosomal protein L2 44 9 Op 32 61/0.000 - CDS 29614 - 29910 471 ## PROTEIN SUPPORTED gi|104773544|ref|YP_618524.1| 50S ribosomal protein L23 45 9 Op 33 58/0.000 - CDS 29910 - 30527 1028 ## PROTEIN SUPPORTED gi|104773543|ref|YP_618523.1| 50S ribosomal protein L4 46 9 Op 34 40/0.000 - CDS 30542 - 31171 1061 ## PROTEIN SUPPORTED gi|104773542|ref|YP_618522.1| 50S ribosomal protein L3 47 9 Op 35 4/0.000 - CDS 31197 - 31505 504 ## PROTEIN SUPPORTED gi|104773541|ref|YP_618521.1| 30S ribosomal protein S10 48 9 Op 36 . - CDS 31541 - 31618 71 ## PROTEIN SUPPORTED gi|227525659|ref|ZP_03955708.1| 30S ribosomal protein S10 - Prom 31661 - 31720 5.8 - Term 31813 - 31857 5.4 49 10 Op 1 51/0.000 - CDS 31903 - 33987 3028 ## COG0480 Translation elongation factors (GTPases) 50 10 Op 2 56/0.000 - CDS 34021 - 34491 795 ## PROTEIN SUPPORTED gi|104773539|ref|YP_618519.1| 30S ribosomal protein S7 51 10 Op 3 . - CDS 34507 - 34914 695 ## PROTEIN SUPPORTED gi|104773538|ref|YP_618518.1| 30S ribosomal protein S12 - Prom 35126 - 35185 8.8 + Prom 34882 - 34941 8.4 52 11 Op 1 . + CDS 35177 - 35986 1145 ## COG0561 Predicted hydrolases of the HAD superfamily + Prom 35991 - 36050 1.6 53 11 Op 2 . + CDS 36071 - 36631 416 ## Ldb0388 hypothetical protein Predicted protein(s) >gi|300496636|gb|AEAT01000078.1| GENE 1 51 - 776 1068 241 aa, chain - ## HITS:1 COG:SP1446 KEGG:ns NR:ns ## COG: SP1446 COG2188 # Protein_GI_number: 15901296 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 12 237 6 230 235 234 51.0 1e-61 MILWGERPMQEPMYIKIHNQLRRDIENHVYQVGDRIPAERQLAEQFKVSRMTLRQAIKTL EEEGILERRLGSGTYVASQKVQEKMSGIMSFTEITRANGQTPSSKLVSYKITQPSLSEKE RLALEGSDKVLRMERIRYADQVPICHEIVTVPEDLIAPFAKDDVSSHLYQTLEKQGGYQI GDATEYISAAVANEQEARLLNCRRGEALITRRQVTKLADGRPFEYTRASYVGERFEFTFS K >gi|300496636|gb|AEAT01000078.1| GENE 2 819 - 1886 1016 355 aa, chain - ## HITS:1 COG:no KEGG:Ldb0448 NR:ns ## KEGG: Ldb0448 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 355 1 355 355 681 96.0 0 MRLIKVSQDPRDLSWEQALDQLEDDDVLMLAPGFYEIPFGQKLKNIVIKGTGTAADMTVL VGTVILDGRYLTLENLAVKTTAIAGALVKVYEGENAPYLTLRGCRLEAAEGERGTALMTL GPVWLELYSCQVKGGIRLVGDEEQHVQISSSEIAATPAAFTGNGFGPLAISQSQIKGDFV LEESSAYEGHFDQTAFDQVTSLSEGNDLYFTESDLSLTLKNGQADLLNCGLPGTTLLEKA NSAVFQNCTFKQFKQVSGSSNLTNCHLEAGEIMGQGKAVFCRPHFSCSEGTWLSLRDASQ VRLQNALLNVAVSHLRLADKAGILGNVLESDQDQLLVKQTGQGKVKLTGIKCKLV >gi|300496636|gb|AEAT01000078.1| GENE 3 1901 - 3013 1378 370 aa, chain - ## HITS:1 COG:no KEGG:Ldb0447 NR:ns ## KEGG: Ldb0447 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 370 1 370 370 756 99.0 0 MSKYIKVGSGGGEVTWHRAMLDMEPGDYLLLEPGYYVWPRGRLLEDVTIKGLGASPEDTR IRSFFSIGENSSRVVFENLTLEPYGDVNTLDLPEETNSYLILRGCVLTGTGSKTTTISVN GQDTVEMYSCRLLNGTLSFFEKANFRLEMADCLLDYESEKFGTISLEGTGTAIINNSEIR GTVNSFDSSNIELNINNSAIGNLNLGGKSWVNVYACRFLNRDYSLYARGECWLNILESQM PSQLAIEDHCHLLMQNSQLYNFQARGESQSFLSNVQIAAAASLEGKSFMDGSLVTFSGNG DYPYFIFLVDQAVLKGRNLQFDPQNWPVLVDNDARLVANALYYQGAPLEIKCEHPENISL MGIKWTERNE >gi|300496636|gb|AEAT01000078.1| GENE 4 3159 - 4766 2769 535 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 22 524 36 547 559 344 39.0 3e-94 MHKKKIASVTLLATAALLTACGQNKGASSSKQVMKTAVTGEISTLDSSKYGDTISSETLQ NSMEGLYRFDKKGQARLAGAVKVTKSKDQKVYTFTLRKNAKWSNGDPVTAQDYVIAWRRT VDPKNDSLDSDSYQVIKNGTDIVAGKKKVSSLGIKALGKYKLQVTLENPIQYLPDLLTGA QFYPQDTKIVKKYGSSYGTSSSKLVYNGPFTVSQWTGSNLKWTLKKNKTYWNAKSVSLSA VKVQVIKTTSTGLNLYKGGQLDYAPVDSDYVKQYEKNADYHTKTTPTNGYMVFNLKRKTT GNVHVRRAISLGVNKQELVKTVLHSGKAAQGFVASDFIYDENGKDYRTSAGKLMTYNLKQ AQKEWALAKKQLGKSKITIELLTSDMDASKRVGEYLQSNLMENLPGLTVKLRSIPLKSRL ADTSKHNFDMVYGTWQPSFQDPIDYLTIGGLFNLESDYKNSTFWKEINQAKSTYATQPAK RQASLIAAEKQLIQKDAFAAPLYQAGVSYLLKSKVTGFRLSPYGTVAYYWDVKIK >gi|300496636|gb|AEAT01000078.1| GENE 5 5282 - 6337 1815 351 aa, chain - ## HITS:1 COG:TP0038 KEGG:ns NR:ns ## COG: TP0038 COG3641 # Protein_GI_number: 15639032 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Treponema pallidum # 11 345 9 343 350 197 43.0 3e-50 MTESKETNGLKQGTLNILNGIGLGVIAALVPAAILGQLMKALLGVAPAFAQTVINITTFT QSLLAAMAGFCAAYLFQMNMIQMCSVAAAAMIGSGAVTFKNGLIMVAGTGDVINIGLTIT LAILLIKLIGNKLGSYTTILLPIIVLVVGGGIGLLILPYVKTVTTFIGMIVMAFTKLQPL LMGVLIGMSFAAMIVSPISSVGIAVAIGLTGVASGAANLGITGAAYTLGIMSYSVNGMGT TLAHFIGTPKIQMANMLEKPKLFVPVLLSSALSGLLAAIFNLQGTPNSAGFGFSGLIGPL AAYAKMTPGWGSIILLTVLYVVYPVALGFFMRWLFIDRLSFAQAEDLRLEV >gi|300496636|gb|AEAT01000078.1| GENE 6 6324 - 7505 1847 393 aa, chain - ## HITS:1 COG:SP0035 KEGG:ns NR:ns ## COG: SP0035 COG0436 # Protein_GI_number: 15899981 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 387 1 388 389 349 45.0 5e-96 MVDLTKHFKQGVAEVKSSAILNFAKYTSQYPDIVKFTVGEPDFNTPDHIKTAAIKGIVDN HSHYALSNGTPGLRKAAADFLARHYDMHYEPSEIIATNGATEAIYTVMSAIINPGDVMVL PTPIFPLYIADAALEKAEVVQIDTSQTNFKLTPDQLQAAVDEYGDRLRILVMNYPTNPTG VMYSQEELDALAAVIKDRPTFVLCDEIYSELNYEQEHASMAKSLRSQAIVLNGVSKSWAM TGYRIGVMAAPQEITDQLAKVHQFITTTEPTPMQDAAEEAFKNGDRDAREMKAAFKERRD YLYQALTETGFEVIKPQGAFYIWAKIPAGLNQKDTEFVYELADQAHVGVCAGSWFAKGGQ GWLRFSYATALDEIKEGVSRIKKFVEENKNDGK >gi|300496636|gb|AEAT01000078.1| GENE 7 7830 - 8000 167 56 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0386 NR:ns ## KEGG: LDBND_0386 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 56 1 56 56 88 98.0 1e-16 MAGKEKEAEKIQKLLGQLEEEISLSYFLKPGTITVGRDLLQAMQDLLANPENWEEN >gi|300496636|gb|AEAT01000078.1| GENE 8 8290 - 8781 749 163 aa, chain - ## HITS:1 COG:SA0840 KEGG:ns NR:ns ## COG: SA0840 COG1881 # Protein_GI_number: 15926569 # Func_class: R General function prediction only # Function: Phospholipid-binding protein # Organism: Staphylococcus aureus N315 # 1 162 1 169 171 152 46.0 3e-37 MQIQVKLDKGYLPDEYAKYASVKEAGNPVVSFPFTLTDLPEGTKYLAWSLVDYDSIPVCG FAWIHWLASDVPAVSEIPADFSRTTDTPQGYNSTVSRFLTDPEEVHTGYIGPTPPDKDHD YRFRVYALSEKLDLEQPYYYNEFLRALKGKVLAESQVDLPARV >gi|300496636|gb|AEAT01000078.1| GENE 9 8884 - 10053 1920 389 aa, chain + ## HITS:1 COG:AGl1145 KEGG:ns NR:ns ## COG: AGl1145 COG2814 # Protein_GI_number: 15890690 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 9 379 44 415 431 174 29.0 3e-43 MSRYKIQAFLFVFVAFMLGCNEYMIVGVLPDISREINASLSSLGYLVTVFALVYAVATPL VTSLTKYFKRHQLLFFLMGIFFIGNTWTALSHSYVSLLLSRILSATTAGAIISLILVIAN FLAPLEKRASLLSWIFAGFSIASIIGLPIGTLISTTFSWHASFWMISLLTLVTFILLLVF VPRDTPQSQSSKGNKQFAILGNWHIQLTLLAIILVCAAQYTYYTYIRTLITDYMHFPKSW LNVLLLLLGLAFIAGNKTGGFLADHGGIKRLPLVFGIQTVLLFLLAPLLPLSWLAFLCIV GICCVNSMYGSSTQVYFMDLAAAEYPESIDFASSFNSIFANVGISLGSFTAAQAAGLTGI ASTPYFGGVYSLLSCLLMVLVCRQLAAKK >gi|300496636|gb|AEAT01000078.1| GENE 10 10113 - 10733 754 206 aa, chain - ## HITS:1 COG:BH3089 KEGG:ns NR:ns ## COG: BH3089 COG1051 # Protein_GI_number: 15615651 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Bacillus halodurans # 6 197 6 197 207 152 40.0 3e-37 MKKGDKLIDWAMEIQAIGQTGLAYSKDIFDTERYSRLREIAAEMLAEKSAVSYDKVKELF CNEIGYQTPKIATRAAIFKDDQILLVQEKEGHWSLPGGWCDVDQSPADNCIKECREESGL TVKPVKIIAVQDHFKHHGSIHPYGITDIYYLCQSLGGEFQANSETSQAAWFKEDDLPPLA ENKNSTEQVKMCFAAHRDANWQTLFD >gi|300496636|gb|AEAT01000078.1| GENE 11 10852 - 12483 2733 543 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 24 542 36 557 559 348 41.0 1e-95 MKIPKNLGQAACVCLAALALTACGSSRASSSAKKTLNWSAGAEIPTMDLSKATDSVSFTQ ISNTFEGLYRLGKDSKITPGLATSEKVSKDGKTYTFTLRKNDKWSNGDPVTAQDFVYSWR RTVNPKTESEYSYLFSGIKNADKIVAGKKPATSLGIKAVGKYKLVVTLERRIPYFNNLMG FAVFFPQNEKAVKKYGSKYGTASKYLVYNGPYIQKGWTGSNLSWKMVKNKYYWDKSKVKL NQINWSVQKSTTTSYNLYQAKKLDATSLDPSQIKQLKSDKAFTLLPQGGTYYMTFSQGKS GNEYVKNANIRKALSLAIDRGGLVSTIDGGASQPANTLTSKDLTKVNGKDYTSLISSSAK SLYPKDGNKKLAKQYLAKGLAELGKSKIKLTLISSDTDSAEKTAESIQSNIEATLPQVKV EVNSVPFKTLLNRLASHNFQLGLIDWIADFADPISFLDLFTTGNSQNDGQWSNSEYDKLI ADSKTTTSASQRWSDMSKAEDILLNDAGICPLYYSTSVMLVRTSVKNAVYNRGNWDFKEA YVK >gi|300496636|gb|AEAT01000078.1| GENE 12 12706 - 13188 527 160 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0381 NR:ns ## KEGG: LDBND_0381 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 62 160 1 99 99 169 94.0 5e-41 MNYDNAVDLIDHLIDQQSDKYFADFVPFTFQNEDYAELEMYLNVHFKPRFAEKIKFIAFA LMYQHESYVYLDEAVANALYPDLKNKNLRNIGLERLGEIIDTMVIDNYGSLNILLKQEND FSLMRIEDGFSTIFFNLKGQLREEVESLVEHQGLYFKKID >gi|300496636|gb|AEAT01000078.1| GENE 13 13536 - 13931 662 131 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773575|ref|YP_618555.1| 30S ribosomal protein S9 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 131 1 131 131 259 98 2e-68 MAQQAAYAGTGRRKDAVARVRLVPGDGKITVNNKDVADYIPLPILVKDLKQPLTLTETEG QYDVIINVNGGGFSGQAGAIRHGIARALLEVDPDFRGPLKKAGFLTRDPRMKERKKPGLK KARKASQFSKR >gi|300496636|gb|AEAT01000078.1| GENE 14 13944 - 14387 751 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773574|ref|YP_618554.1| 50S ribosomal protein L13 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 147 1 147 147 293 99 8e-79 MRTTPLAKTSEIERKWYLIDATDVSLGRLSTAVATILRGKNKPQFTPNVDTGDNVIIVNA SKLKLTGKKATDKIYYHHSEYRGGLKSVSAGELLAKNPVKLVELSVKGMLPKNTLGHQEF LKMHVYAGEEHKHEAQKPEKLDINNLI >gi|300496636|gb|AEAT01000078.1| GENE 15 14493 - 15167 846 224 aa, chain - ## HITS:1 COG:BH0167 KEGG:ns NR:ns ## COG: BH0167 COG0101 # Protein_GI_number: 15612730 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Bacillus halodurans # 3 204 40 238 263 186 48.0 3e-47 MTKGQEVRVFGSGRTDAGVHSVGQVIHFDYPGREIPAANMIKALNSQLPMDMVFTDCEIV DKDFHSRFSVKGKWYRYRVSLDGFVNPFKRFYTGHYPYPVDVEKMQEAAKDLLGRHDFTS FAASGGQIEDKVRDMYYVNVALDEENNEVIMDFIATGFLYNMVRILVATLLEIGNGRRPV HDLKRVIAAKNRLEVQQTAQSCGLYLYHVFYEEVPRKYRLDLDL >gi|300496636|gb|AEAT01000078.1| GENE 16 15281 - 16078 1060 265 aa, chain - ## HITS:1 COG:lin2783 KEGG:ns NR:ns ## COG: lin2783 COG0619 # Protein_GI_number: 16801844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Listeria innocua # 1 247 2 248 266 246 50.0 4e-65 MSKIIIGRYLPGTTFVYRVDPRAKLLTTFYFIIMIFLANNWVSYLVISIFGLACVFATGL KARVFWDGVKPMIWLIVFTSLLQTFFMAGGKVYWHWWIFTLSSEGLINGLYVFIRFAMII LVSTVMTVTTKPLEIADAMEWMLTPLKLFKVNVGMISLVISIALRFVPTLFDQTVKIMNA QRSRGADFNDGGLVKRAKSVVPMLVPLFIDSLEVALDLSTAMESRGYKGSEGRTRYRILE WSKVDLIPAAYCLLLTILMITTRKH >gi|300496636|gb|AEAT01000078.1| GENE 17 16071 - 16955 378 294 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 1 284 113 396 398 150 35 1e-35 GKVGSELMAIKFENVSYVYSPGSPLEAIGLDQLNFSLEEGKFIALVGHTGSGKSTLMQHF NALLKPTSGKIEIAGYTITPETGNKGLKDLRRKVSLAFQFPEAQLFENTVLKDVEYGPRN FGFSEDEAREAALKWLKKVGLKDDLIEHSPFDLSGGQMRRVALAGVLAYEPEIICLDEPA AGLDPMGRLEMMQLFKDYQAAGHTVILVTHNMDDVADYADDVLVLEHGRLIKHASPKEVF KDSEWLQKHHLAEPRSARFAAKLEAAGLKLPGQPLTMPELADAIKQSLKGGEHE >gi|300496636|gb|AEAT01000078.1| GENE 18 16910 - 17758 1028 282 aa, chain - ## HITS:1 COG:BS_ybxA KEGG:ns NR:ns ## COG: BS_ybxA COG1122 # Protein_GI_number: 16077213 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Bacillus subtilis # 3 282 4 281 281 290 53.0 3e-78 MSDNIISFDHVTFTYPDSPRPAVSDLSFAIERGSWTALIGHNGSGKSTVSKLINGLLAPD DLDKSSITVDGVKLGADTVWEVREKVGIVFQNPDNQFVGATVSDDVAFGLENRAVPRPEM LKIVAQAVADVGMADYADSEPSNLSGGQKQRVAIAGILAVKPQVIILDESTSMLDPEGKE QILDLVRKIKEDNNLTVISITHDLEEAAGADQVLVLDDGQLLDQGKPEEIFSKVEMLERI GLDIPFVYRLKQLLKERGIVLPDEIDDEEKLVQSLWQLNSKM >gi|300496636|gb|AEAT01000078.1| GENE 19 17948 - 18331 627 127 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773569|ref|YP_618549.1| 50S ribosomal protein L17 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 127 1 127 127 246 100 2e-64 MSYRKLGWDSSQRKAMLREMTTQLIINERIVTTEARAKEVRRTAEKMITLGKRGDLAARR KAAAFVRNEIADIHEEGDEVVVKSALQKLFSDVAPRYKDRNGGYTRIMKLAVPRKGDAAP MVVLELV >gi|300496636|gb|AEAT01000078.1| GENE 20 18355 - 19293 920 312 aa, chain - ## HITS:1 COG:BH0162 KEGG:ns NR:ns ## COG: BH0162 COG0202 # Protein_GI_number: 15612725 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Bacillus halodurans # 1 312 1 314 314 368 60.0 1e-102 MIEFKKPNITVVDQEDSYGKFVVEPLERGFGTTLGNSLRRVLLTSVPGTGLVKVKIDGIL HEFTTVPGVKEDVTKIILNLKKLELRAYTEEVKTIELDVEGPATVTAEDLKADADVEVLN PDQYICTIAQGGHLHMWIDVCNGRGYVPASENKSAEMSIGDIPVDSLFSPIEKVNYQVES TRVGKREDFDKLTLEIWTNGSIAPNDALNFAARVLVEHFKAFESADAAAEIGEVMVEQEN DQKEKKLEMTIEDLDLSVRSYNCLKRAGINTLQDLTVKSEAEMMRVRNLGRKSLEEVKNK LADLGLSLRQED >gi|300496636|gb|AEAT01000078.1| GENE 21 19337 - 19726 643 129 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773567|ref|YP_618547.1| 30S ribosomal protein S11 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 129 1 129 129 252 99 3e-66 MPAKKTARKRRVKKHVESGVAHIHSTFNNTLVMITDVQGNAVAWSSAGALGFKGSRKSTP FAAQMAAEAAAKSAIDQGMKHIEVSVKGPGSGRESAIRALQAAGLEITSIRDVTPVPHNG SRPPKRRRV >gi|300496636|gb|AEAT01000078.1| GENE 22 19755 - 20105 584 116 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773566|ref|YP_618546.1| 30S ribosomal protein S13 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 116 1 116 116 229 99 2e-59 MARIAGVDLPRDKRVVIALTYIYGIGEHTAQEICAAAGVSEDVRSKDLTPEQQEKLRAEV DKYRVEGDLRREVSMNIKRLVDIGSYRGIRHRRGLPVRGQNTKNNARTRKGAKRSR >gi|300496636|gb|AEAT01000078.1| GENE 23 20131 - 20247 213 38 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|58336652|ref|YP_193237.1| 50S ribosomal protein L36 [Lactobacillus acidophilus NCFM] # 1 38 1 38 38 86 100 2e-16 MKVRPSVKPMCEHCKVIKRHGRVMVICPANPKHKQRQG >gi|300496636|gb|AEAT01000078.1| GENE 24 20262 - 20483 302 73 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 71 1 71 72 120 84 9e-27 MAKDDVIEVEGKVVDTLPNAMFKVELENGATILAHVSGKIRMHYIRILPGDRVTVELSPY DLTKGRITYRFIK >gi|300496636|gb|AEAT01000078.1| GENE 25 20559 - 21212 919 217 aa, chain - ## HITS:1 COG:BH0155 KEGG:ns NR:ns ## COG: BH0155 COG0563 # Protein_GI_number: 15612718 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Bacillus halodurans # 2 214 1 212 217 236 56.0 2e-62 MINLILLGLPGAGKGTASEQIVDKYHLAHISTGDMFREAMANKTPVGLEAKSYIDKGDLV PDEVTAKLVEERLGQDDVKNGFILDGFPRTTNQAELLDEITTRLNKQLTNVIAIDVKEET LIDRLSARFMCKNCGATYNKFSKRPKVEGTCDRCGGHEFYQREDDKPEVVKNRLEVNEKM NTPLKEYYDKKGLLATVNGEQAPEKVFADIDAILSKD >gi|300496636|gb|AEAT01000078.1| GENE 26 21223 - 22518 712 431 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 10 431 19 438 447 278 36 3e-74 MFSTLKNAFKDKEIRNKLFYTLFILVIYRLGANITVPGINAKALTTVANTGLVSVLDTVS GGGLDNYSIFSLGVSPYITAQIVIQLLQMDIVPTLVEWGKQGEVGRRKTNQVTRYLTLFV AFVQSVGITLGFNALSSFGLVKTQTWQTYFEIGMIMTAGTFLLTWLGDEITDKGLGNGVS VIIFAGIIARLPGGLYQVFQDQVINNSASDRWQGVAFFVALIVAILLVTKFVTWVEQADR RIPIQYTRRATTSGSESFLPLKVNVSGVIPVIFASSFIVTPATILMAFQGKYGDTTWYQV LSNIFSLQTTPGAIIYTLLIILFTFFYAFVQVNPEKLAENLQKQGAYIPSVWPGKDTEKY ISSMLLKLSTVGSVYLGLVALLPQLATNIWDLPSSIGLGGTSLLIVIGVVLELSRQINGL LMKREYAGFIR >gi|300496636|gb|AEAT01000078.1| GENE 27 22518 - 22958 721 146 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773561|ref|YP_618541.1| 50S ribosomal protein L15 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 146 1 146 146 282 97 2e-75 MKLNELHPSEGSRHARKRVGRGTSSGFGKTSGRGQKGQHARSGGKTRLGFEGGQMPLFRT MPKRGFKNISRKEYAIVNLADLNKFEEGSVVDFEALKAKGLVKKQLSGVKVLGNGELNVK LTVKVNKVSEAAKSAIEAAGGTVEVI >gi|300496636|gb|AEAT01000078.1| GENE 28 22979 - 23164 291 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773560|ref|YP_618540.1| 50S ribosomal protein L30 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 61 1 61 61 116 98 2e-25 MTDLKITLIRSVAHRLPEQRKVVEALGLGKINSTVVQPDNAATRGALMKIAHLISVEEVN K >gi|300496636|gb|AEAT01000078.1| GENE 29 23176 - 23688 837 170 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773559|ref|YP_618539.1| 30S ribosomal protein S5 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 170 1 170 170 327 98 8e-89 MANRNDSKNRRSKEDIEDQLVAINRITKVVKGGRRQRFAALVVVGDKKGHVGFGTGKATE VPEAIRKAVEAGKKNMISVPTVGTTIPHEVLGHYGSGNVLLKPAEAGSGIAAGGAVRIVM DMAGIGDVTSKSLGSNTPINVIRATIDGLQKLKTREDVLKLRESAKSLQD >gi|300496636|gb|AEAT01000078.1| GENE 30 23705 - 24064 578 119 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773558|ref|YP_618538.1| 50S ribosomal protein L18 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 119 1 119 119 227 98 9e-59 MISKPDKNKLRLKRHRRVRGKISGTAERPRLSVFRSNTNIYAQLIDDVAGVTLASASTLD KSVSKDATKVEQAQAVGKAIAEAGKAKGITEVVFDRGGYIYHGRVEALADAARENGLEF >gi|300496636|gb|AEAT01000078.1| GENE 31 24091 - 24621 882 176 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773557|ref|YP_618537.1| 50S ribosomal protein L6 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 176 1 176 176 344 99 5e-94 MSRIGLKVINVPESVTVTKNGNEITVKGPKGELTREFDPRIKFEQEDGVIRFSRSNENDK AIHGTMRANLANMIEGVVTGYKKELKLIGVGYRAVAKNNVLTLNVGYSHPVEMKAPEGVT VTTSSATDVTIEGISKQVVGQFAAEIRAVRSPEPYKGKGIRYADEVVRRKEGKTGK >gi|300496636|gb|AEAT01000078.1| GENE 32 24646 - 25044 657 132 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773556|ref|YP_618536.1| 30S ribosomal protein S8 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 132 1 132 132 257 99 6e-68 MVLTDPIADFLTRIRNANMAKHDSVEIPASNIKKSLTEILKQEGFIRDYEVTEDSKQGVI KITLKYGPNGERVISGLKRISKPGLRNYVSADNLPKVLNGLGIAIVSTSAGILTDKEARE KNVGGEVIAYVW >gi|300496636|gb|AEAT01000078.1| GENE 33 25067 - 25252 338 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773555|ref|YP_618535.1| 30S ribosomal protein S14 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 61 1 61 61 134 100 6e-31 MAKTSQKVRNHRPAKFSSREYTRCERCGRPHSVYRKFGLCRICLKELGHKGQIPGLKKAS W >gi|300496636|gb|AEAT01000078.1| GENE 34 25267 - 25809 891 180 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773554|ref|YP_618534.1| 50S ribosomal protein L5 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 180 1 180 180 347 99 5e-95 MANSFATKYNEEIVPALTKKFNYTSSMQVPKIDKIVLNMGVGDAVANAKNLDEAVEELTL ISGQKPMITKAKKSIANFRLREGMSIGAKVTLRGDRMYDFLSKLINVSLPRVRDFRGVST RSFDGRGNYTLGVKEQLIFSEIDFDKVNRTRGLDIVIVTTAQTDEEARELLTQFGMPFAK >gi|300496636|gb|AEAT01000078.1| GENE 35 25829 - 26068 373 79 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116513550|ref|YP_812456.1| 50S ribosomal protein L24 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] # 1 79 1 79 79 148 97 5e-35 MFVKIGDKVKVIAGSEKGKEGTVLSVNVKKNRVVVKGVNMIKKATKASAANANGGVVETE GSIHASNVKVIAKAESNKD >gi|300496636|gb|AEAT01000078.1| GENE 36 26085 - 26453 593 122 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116513549|ref|YP_812455.1| 50S ribosomal protein L14 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] # 1 122 1 122 122 233 99 2e-60 MIQTETRLKVADNSGARELLVIRVMGGSKRKTGNIGDIVVAAVKQATPGGVVKKGDVVKA VIVRTKSGARREDGSYIKFDENAAVIINADKSPRGTRIFGPVARELREGDFMKIVSLAPE VL >gi|300496636|gb|AEAT01000078.1| GENE 37 26484 - 26750 443 88 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773551|ref|YP_618531.1| 30S ribosomal protein S17 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 88 1 88 88 175 98 4e-43 MSESIERNRRHVYQGRVVSDKMDKTIVVVVDTYKNHPVYSKRTRYSKKYYAMDENNEAKV GDIVRIMETRPLSRTKRFRLVDIVKKSV >gi|300496636|gb|AEAT01000078.1| GENE 38 26769 - 26966 313 65 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773550|ref|YP_618530.1| 50S ribosomal protein L29 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 65 1 65 65 125 100 5e-28 MKTKEIRSLSTDELLAKEKQYKEELFNLRFQQATGQLENTARLSQVRKNIARIKTILSEK ELEQN >gi|300496636|gb|AEAT01000078.1| GENE 39 26956 - 27399 760 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773549|ref|YP_618529.1| 50S ribosomal protein L16 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 147 1 147 147 297 100 7e-80 MPLVPKRVKHRREFRGKMRGAAKGGKTVAFGEYGLEALESHWITNRQIEAARVAMTRYMK RGGKVWIRIFPQKSYTAKGVGVRMGSGKGAPAGWVAVVKREKIMFEIGGVSEETAREAMR LAASKLPIKCKFVKREDQEAGGATNED >gi|300496636|gb|AEAT01000078.1| GENE 40 27399 - 28070 1115 223 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773548|ref|YP_618528.1| 30S ribosomal protein S3 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 223 1 223 223 434 97 1e-121 MGSKINPIGFRLGVNRDWEAKWYAARGYKETLNEDLRIRKFLDEKLKDASVSTVEIERAA NRVNITIHTARPGMVIGKGGAEVEALNKEINALTNKQVHINIVEIKKPDLDAKLVADSIA RQLEARIAFRRASRQAAQRSMRTGAKGIKVQTAGRLNGADMARREWHTEGSVPLHTLRAD IDYAWVNAFTTYGEIGVKVWINRGEILPGRKNQPAKRSKGGKK >gi|300496636|gb|AEAT01000078.1| GENE 41 28084 - 28437 561 117 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773547|ref|YP_618527.1| 50S ribosomal protein L22 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 117 1 117 117 220 100 8e-57 MAEQISSARAEARTVRIAPRKARLVVDLIRGKSVAEALAILKFTPKAASPIVEKVLRSAV ANAEHNYDLESANLYVSEAYVNEGATLKRFRPRAKGSASPIMKRTSHVVVVVSELND >gi|300496636|gb|AEAT01000078.1| GENE 42 28459 - 28734 468 91 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773546|ref|YP_618526.1| 30S ribosomal protein S19 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 91 1 91 91 184 98 5e-46 MSRSIKKGPFADAHLLKKVDEQQAAEKKQVIKTWSRRSTIFPSFVGLTIAVYDGKKHVPV FVTEDMVGHKLGEFVPTRTFRGHKADDKASK >gi|300496636|gb|AEAT01000078.1| GENE 43 28752 - 29588 1435 278 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773545|ref|YP_618525.1| 50S ribosomal protein L2 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 278 1 278 278 557 98 1e-158 MAIKVYKPTSNGRRNMTSSDFAEITKSKPEKTLLASKSKTAGRNSYGHITVRHRGGGHKQ QYRIIDFKRTKDNAKAKVVAIEYDPNRSANIALLHYTDGTKAYILAPKGLTVGSWVESGA DADIKVGNALPLKNIPTGTEVHNIELKPGKGGQIARSAGTSAQVLGVDGKYTQVRLQSGE VREILSECRATIGAVGNEQHSLINIGKAGRSRWMGKRPQSRGSVMNPNDHPHGGGEGKAP VGRPQPMTPWGKKSRGVKTRDSKKASEKLIIRHRKGRK >gi|300496636|gb|AEAT01000078.1| GENE 44 29614 - 29910 471 98 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773544|ref|YP_618524.1| 50S ribosomal protein L23 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 98 1 98 98 186 97 2e-46 MDARNIILRPVITEKSADLMDSKKYTFDVALTATKLQVRDAIEEIFDVKVKSVNIMNVRG KEKRVGRYTGKTARRRKAIVALTEDSNDIKIFKDENNE >gi|300496636|gb|AEAT01000078.1| GENE 45 29910 - 30527 1028 205 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773543|ref|YP_618523.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 205 1 205 205 400 98 1e-111 MANFKLMDQNGNNAGEVTLNDNVFSVEPNEAVVFDAIIRQRAGKRQGTSKVKNRSAVRGG GKKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYAYSMPRKQRRLAIKSVLSQKLLD QNLVVLDKLTLDAPKTKDFIAILNGLKLEGKVLVVSDDKNVQLSAKNLPKVKVVPVNGLN VEDAVNYDKLVLTQDDVKKIEEVLA >gi|300496636|gb|AEAT01000078.1| GENE 46 30542 - 31171 1061 209 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773542|ref|YP_618522.1| 50S ribosomal protein L3 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 209 1 209 209 413 99 1e-115 MTKGILGRKVGMTQIFTKDGVLVPVTVIEATPNVVMQVKTVENDGYEAVQLGYQDKREVL SNKPEKGHADKAKTSPKRFIRELRGVELSDYEVGSETTVETFKEGDVVNVTGTSRGHGYQ GNIKRHHQSRGPETHGSRYHRIPGSMGSIINRVPKGKKLPGHMGVKTVTIENLVVEKVVA DKNVLMIKGNVPGAKNSLIIVKSSAKASK >gi|300496636|gb|AEAT01000078.1| GENE 47 31197 - 31505 504 102 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773541|ref|YP_618521.1| 30S ribosomal protein S10 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 102 1 102 102 198 98 3e-50 MANEKIRIRLKSYEHSILDESAAKIVDTAKRTGAEISGPVPLPSERTLFTVLRSPHKNKD SREQFEMRTHKRLIDILNPTPKTVDSLMKLDLPSGVDIEIKL >gi|300496636|gb|AEAT01000078.1| GENE 48 31541 - 31618 71 25 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227525659|ref|ZP_03955708.1| 30S ribosomal protein S10 [Lactobacillus jensenii JV-V16] # 1 22 6 27 144 32 68 8e-55 VASTRKVAARQAALPQWLCREFSPS >gi|300496636|gb|AEAT01000078.1| GENE 49 31903 - 33987 3028 694 aa, chain - ## HITS:1 COG:SP0273 KEGG:ns NR:ns ## COG: SP0273 COG0480 # Protein_GI_number: 15900207 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Streptococcus pneumoniae TIGR4 # 5 692 3 691 693 970 70.0 0 MANKREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGKIHKIGETHEGDSQMDWMEEEKE RGITITSAATTAQWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVTVLDAQSGVEPQTEN VWRQAENYGVPRIVFVNKMDKIGANFDFSVKSLHERLNANAIAVQMPIGAEDQFEGVIDL FDMVADVYDEDKLGANWETIPVPDEYKEEAESRREEMIEEIAEVDDDIMEKFLGGEEISN EELKAALRRATLELKAFPVFAGSAFKNKGVQMMLDGVVDYLPSPLDVKPYIAHDKEGNEV ELLADDNKPFAALAFKIATDPFVGRLTFIRVYTGSLESGSYVLNASKNQRERVGRLLQMH ANSRTEIPEVFSGDIAGAIGLKNTTTGDSLTDPAHPLILESLDIPAPVIQVSVEPKSKAD RDKMDVALQKLTEEDPTFRAETNPETGETLISGMGELHLDIMVERMKREFNVEATIGEPQ VAYRETFTVPTQAQGKFVRQSGGKGQYGDVWIEFTPNEGKGYEFEDAIVGGVVPREYIPA VDAGLQEAMKNGVLAGYPLIDVKAKLYDGSYHEVDSSEAAFKVAASLALKNAASKAGAVI LEPIMKVQVIAPEEYLGDVMGSITARRGQMEGMEDRAGAKVINAMVPLSEMFGYATTLRS STQGRGTFTMVMDHYSPCPKSIQAEIIKKRGGNA >gi|300496636|gb|AEAT01000078.1| GENE 50 34021 - 34491 795 156 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773539|ref|YP_618519.1| 30S ribosomal protein S7 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 156 1 156 156 310 99 6e-84 MPRKGHVSKRDVLADPVYNSKLVTKLINHLMKDGKRAQASSILYDAFDIIKDKTGKEPMD VFEEAMNNVKPVLEVKARRIGGSNYQVPVEVRPERQTTLALRWLVSYSRLRNEHTMDERL ANELIDASNNTGSAVKKREDVHRMAEANRAFAHYRF >gi|300496636|gb|AEAT01000078.1| GENE 51 34507 - 34914 695 135 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773538|ref|YP_618518.1| 30S ribosomal protein S12 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 135 1 135 135 272 100 2e-72 MPTINQLVRKGRHSKTTKSKSPALNYSYNSMKKEQVFNPAPQMRGVATRVGTMTPKKPNS ALRKYARVRLSNLTEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGV DGRKQARSKYGAKKG >gi|300496636|gb|AEAT01000078.1| GENE 52 35177 - 35986 1145 269 aa, chain + ## HITS:1 COG:STM3831 KEGG:ns NR:ns ## COG: STM3831 COG0561 # Protein_GI_number: 16767116 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Salmonella typhimurium LT2 # 2 269 3 269 281 171 38.0 2e-42 MIKLIAIDTDGTLLNSQEEIQASTKEAISKALDRGVKVVLCSGRPIAGLAPYMNELGIKG EDQYALTLNGAISRKASGEIMTSDLIANSVYRRLTAYALSLKLPFNIVDFESRIITPNHD IDPMVYQQAYENQAVLFVRSVEEFPEKGQAIAKACFVGSQELLDRVEDRVKEDWGQDFNV LRTDARFLELLNPKVNKGQGLKELCGRLEIAPEEVMAIGDERNDLDMFAFTGTSVAMGNG NDLVKQAADYVTSSNDEDGIAQALEKFVF >gi|300496636|gb|AEAT01000078.1| GENE 53 36071 - 36631 416 186 aa, chain + ## HITS:1 COG:no KEGG:Ldb0388 NR:ns ## KEGG: Ldb0388 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 186 1 186 186 322 98.0 5e-87 MLSEMISLLCGLLAALIADRYRYNTFLECKSRLADDIPYIILAGNLLVYLISNSRSSAIS LLFIINFFLMVVSDLHEQSFDTCLLVVPLATGLMHFFQAPNTEGLGQAAIFLAVLVWLAF TGKMGSGDVWHFLLLSLNFSCPVAVKSFLLASLLAIAHALWHKRPGKEPFAFLPYLFWGL NLQFFL Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:30:50 2011 Seq name: gi|300496629|gb|AEAT01000079.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00168, whole genome shotgun sequence Length of sequence - 7568 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 6, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 313 - 372 6.2 1 1 Op 1 . + CDS 395 - 1705 1439 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 2 1 Op 2 . + CDS 1698 - 2573 1434 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold 3 1 Op 3 . + CDS 2638 - 3447 1119 ## COG0561 Predicted hydrolases of the HAD superfamily 4 1 Op 4 . + CDS 3449 - 4198 1160 ## COG2071 Predicted glutamine amidotransferases + Term 4206 - 4246 5.6 + Prom 4234 - 4293 5.0 5 2 Tu 1 . + CDS 4351 - 5262 1248 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 6 3 Tu 1 . - CDS 5802 - 6104 209 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 6346 - 6405 2.3 + Prom 6055 - 6114 3.0 7 4 Tu 1 . + CDS 6312 - 6542 137 ## lhv_0576 transposase - Term 6378 - 6419 6.5 8 5 Tu 1 . - CDS 6435 - 6632 230 ## COG1278 Cold shock proteins - Prom 6741 - 6800 7.0 9 6 Tu 1 . - CDS 6836 - 7567 581 ## LDBND_1954 hypothetical protein Predicted protein(s) >gi|300496629|gb|AEAT01000079.1| GENE 1 395 - 1705 1439 436 aa, chain + ## HITS:1 COG:lin2906 KEGG:ns NR:ns ## COG: lin2906 COG1455 # Protein_GI_number: 16801965 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 24 433 35 443 450 127 24.0 4e-29 MDKLAKWCIWLRRRSFFRVAQRTFAVLMPIATVGAFFQVLQNSVFAPESFIYNLFDFDKI MSDRFWDIGTSLSQCVVEVIFGLFCLFTVYFSASFTAKIYRKDATMAGISALTSLLVMIY LFQLGLTGRISLLTGGYLVFQYTFFALLLGYGVGQVFHWLGADYEPVNYEHTKLVQDRAI KALKPTLVTVIVGIAIGGILYVVISKVKANFSLTSIVSSVENSNNLLLTVPATALASFLS WLGLEAPILDLGNVAGSAAATANLTYVLRRGSVWKVPYPYLGGSMISIYGVMGGCGTILA LAVAILIWGRRKESETVAKMNLWPLLFSSSRGFLVGLPVILNPIYALELVLVPVVNMLIA ALAIFLHIVPTPVYTVLTGTPGPLVPFFATNGNWPTLIFTIFLFCLDVVMMIPAVKLDNR TKILLKDYEMEDDRHV >gi|300496629|gb|AEAT01000079.1| GENE 2 1698 - 2573 1434 291 aa, chain + ## HITS:1 COG:lin0949 KEGG:ns NR:ns ## COG: lin0949 COG4814 # Protein_GI_number: 16800018 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Listeria innocua # 23 271 35 293 300 101 26.0 2e-21 MFKSRNWKLIVVALTIIILLAVPGYSWMKKTNKEHAERQRSQLSPLIMVPGSSATVNRFN ELVNLLNENTPYKHSLLKVEISEDGTLTYSGSIKKEDNEPFIVIGFQNNHDGYSNIKKQA GWLDDAFYEIAKTYKFNNFKAFGHSNGGLIWTYWLEHYYSDYSDEITIKRLMTLGSPYNF SEKSIKYKTQMMTDFIKYRKRLPKNMIVYSLSGGKNYESDGIVPESSVEAGKYIFQNQVK SYTTMTVTGAEAQHSSLPQNKQVVRIIQEYLLKQQVKPGPNNSQNSKHKEN >gi|300496629|gb|AEAT01000079.1| GENE 3 2638 - 3447 1119 269 aa, chain + ## HITS:1 COG:VC1364 KEGG:ns NR:ns ## COG: VC1364 COG0561 # Protein_GI_number: 15641376 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Vibrio cholerae # 4 264 3 265 273 133 31.0 3e-31 MKIKLIAVDLDGTLLTSRKKVSPKTLATLKKAREKGILVVPLSGRPLPGVLKVFEPFKLD PADNFAICYNGGLIQRMDGEVLSASPLTDENVEHILALKQTGIFGPYFMDTKDFYVAPKG SAFGVGFLAKARNMGVKRMVPGQHYEFIKGEFVSLPSKMKKFRAGFSPATEQEFEISASG GHCLEFNTPGTSKGQALTTLLDLLNIQPEEAMVFGDNNNDLSDFQLPGVFKVAMGNAIDE IKAAADYVTASNNQDGIALAVEKFVDMGE >gi|300496629|gb|AEAT01000079.1| GENE 4 3449 - 4198 1160 249 aa, chain + ## HITS:1 COG:FN0505 KEGG:ns NR:ns ## COG: FN0505 COG2071 # Protein_GI_number: 19703840 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Fusobacterium nucleatum # 3 247 4 243 243 237 47.0 2e-62 MAKAVIGISASEVTIQSGPFMGEPRTYVNAAYVDSVLKNGGIPLVIPFTAGGEEMAFKQL DLVDGLILSGGHDLDPHLYGEEIDQKSGETWPDRDAFDMALLKRAEETGKPVLGICRGAQ IINVAHGGSMWQDLSLRPGNTLKHMQATRPDVGTHVVKIKSGTTLKKIMGESSLMTNSFH HQLIKEVAPDLTESASASDGVTEALESTDGKVIAVQWHPEEMHANPAPEASIMNRLFKYL IDKAEEEKQ >gi|300496629|gb|AEAT01000079.1| GENE 5 4351 - 5262 1248 303 aa, chain + ## HITS:1 COG:FN2101 KEGG:ns NR:ns ## COG: FN2101 COG0697 # Protein_GI_number: 19705391 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Fusobacterium nucleatum # 2 283 3 285 301 169 37.0 5e-42 MKDKHLGILLAITGAALWGTSGTAAEMLYQNPNINTFWLVDVRSWLAGASLLLISLVHKG KGTFAIFKNPRDLLYAALFSMLGITGAQFTYFYTVAASNAPTATVLVFLAPVLIICFMAA KTRQMPRRIDLIAVLLAVVGTVVLVTNGNFSHLTVTPKTLVWGFFSALTQALAIAMPAKL FKKYGTITILAWGMLLGGIILSPALALMPATGVTVKEWSLVIYIVIAGTVFAYSLYLSSV MYISAGLASMLEAFEPLVATILSVTLLGSDFGIMKMAGGVLIILATCLQVVPSPRRGKLR RNL >gi|300496629|gb|AEAT01000079.1| GENE 6 5802 - 6104 209 100 aa, chain - ## HITS:1 COG:DRC0005 KEGG:ns NR:ns ## COG: DRC0005 COG1961 # Protein_GI_number: 10957532 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Deinococcus radiodurans # 3 72 6 74 185 70 50.0 7e-13 MAKIGYARVSSKEQHLDRQLVALKDVDKLFTDKLSGANTNRPELQKMLAYIREGDIVMVT ELDRLGRNNQDLTNSLANKYSIKLLVMALMPPACTSGGGK >gi|300496629|gb|AEAT01000079.1| GENE 7 6312 - 6542 137 76 aa, chain + ## HITS:1 COG:no KEGG:lhv_0576 NR:ns ## KEGG: lhv_0576 # Name: not_defined # Def: transposase # Organism: L.helveticus # Pathway: not_defined # 1 76 383 458 459 131 94.0 8e-30 MSNLRHELFEKLSKFFYQYFLTKSHKKELLHQKQFFIVLDKLLWNNISRLRSSIALFNIV TNFLPFLKTLKTVSFN >gi|300496629|gb|AEAT01000079.1| GENE 8 6435 - 6632 230 65 aa, chain - ## HITS:1 COG:SPy2077 KEGG:ns NR:ns ## COG: SPy2077 COG1278 # Protein_GI_number: 15675836 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Streptococcus pyogenes M1 GAS # 1 62 1 63 67 86 71.0 1e-17 MQNGTVKWFNADKGFGFITGSDGDVFVHFSSIKTNGFKSLEEGQKVSYDVEQGNRGPQAT NVVPQ >gi|300496629|gb|AEAT01000079.1| GENE 9 6836 - 7567 581 243 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1954 NR:ns ## KEGG: LDBND_1954 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 165 243 1 79 79 145 94.0 2e-33 AAAKKAAAKKAATDKAAADKAAADKAAADKAAADKAAADKAAADKAAADKAAADKAAADK AAADKAAADKAAASSNSESATVDSSSSSETTNPTVYTPFAGKAVHTIYTGTNTYLYTTKE LTTIATTPLQGDTSVIAYPDGITTALTGKNAGDLAIPVTYKGQNLYFKGTLGDLTSNGLY PDGYYYALTDTTFYGVVKPTDPSVKLDAPFLNGSTWFYYFDGGVTIYSYKNNVWTGNTFL NAQ Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:31:00 2011 Seq name: gi|300496624|gb|AEAT01000080.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00182, whole genome shotgun sequence Length of sequence - 3789 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 4, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 57 - 1124 396 ## gi|300812391|ref|ZP_07092824.1| hypothetical protein HMPREF9264_1668 + Prom 1219 - 1278 3.6 2 2 Tu 1 . + CDS 1323 - 1655 290 ## Ldb1226 hypothetical protein + Term 1686 - 1729 -0.1 3 3 Tu 1 . + CDS 2292 - 2510 253 ## Ldb2174 hypothetical protein + Term 2585 - 2621 2.2 + Prom 2512 - 2571 3.8 4 4 Tu 1 . + CDS 2734 - 3787 983 ## COG0350 Methylated DNA-protein cysteine methyltransferase Predicted protein(s) >gi|300496624|gb|AEAT01000080.1| GENE 1 57 - 1124 396 355 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300812391|ref|ZP_07092824.1| ## NR: gi|300812391|ref|ZP_07092824.1| hypothetical protein HMPREF9264_1668 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] hypothetical protein HMPREF9264_1668 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 1 355 1 355 355 672 100.0 0 MLHKISLSSESSQFNKVIHILEGAQKDSTKQIIDTYINKLVEEAMNGKIEDVYPNITTLC QYLKRIQNSKVKCICQRMVMANEYSKELAHRGCKVTIDAKIESSKWTRNSFPSRLLSLTH VYKKDSDHKLVSHLSIYTGIQLEDIEETNIQGNKSYSESQKLYLDILAKSQVHVFQEILF QEKCFFIWKNDVIRAFDSLNKSLSSEELKQFIDMLLVNLQDVVKSSKNDIEPVLAYNCNM LGSALIEALIRNAYVIETQSENNGDVTLSDLLSGKNECTQKIFTDLHVKALSYFLMQNFP GDSEGLGLNIRNSLAHLHNVSKDLLSRYGVAEVMWLFTDVLNSIYLFHCENQTPS >gi|300496624|gb|AEAT01000080.1| GENE 2 1323 - 1655 290 110 aa, chain + ## HITS:1 COG:no KEGG:Ldb1226 NR:ns ## KEGG: Ldb1226 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 110 1 110 110 196 98.0 3e-49 MALKLIKTKNAAFVVDEVQDDVREKMGILFGRAIHLYAKRVPTAANPKGVMQYSDYFSNQ AVQVCRKDNIVEDRPVNEAENKIYQELSTGQGLDKDDREYLRDNCSEDQE >gi|300496624|gb|AEAT01000080.1| GENE 3 2292 - 2510 253 72 aa, chain + ## HITS:1 COG:no KEGG:Ldb2174 NR:ns ## KEGG: Ldb2174 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 72 3 74 74 78 98.0 7e-14 MPRTKNIKTIEAEISQTEEQLQRLKERCDKASQKLDALYELKKHREQEELLKAIDKSTRT KAEILAFLESHA >gi|300496624|gb|AEAT01000080.1| GENE 4 2734 - 3787 983 351 aa, chain + ## HITS:1 COG:MA4322 KEGG:ns NR:ns ## COG: MA4322 COG0350 # Protein_GI_number: 20093111 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Methanosarcina acetivorans str.C2A # 186 345 4 153 156 152 45.0 1e-36 MDDNEMWQAVQTCDPAYDGEFFYAVQTTRIFCRPSCKSKCPRRNNVEYFKSSAEAEAAGY RPCKRCRPDLPQYDPDCDLAKASKAVFDQYFTDRQELNQQLKELGVTRKQMSLVFKRYYD MKPAEYLIQVRIAAAKQALQAGASVFDAAADSGYTNYSSFYAHFRKLSGMPPAKYRQLFA QNISRAVMDTPIGPLRIVASQDAILCVEPANYLEKKAGQATEQVPADRIIPNDPSGDLVK ACMRELKEYFAGQRQKFDLPLSPEGTSFQQKVWQQLQQIPYGETRSYQQLAEMTGDKNAS RAIGLANNCNPILILIPCHRVIGADGSLTGYAAGLAAKKLLLDLEKGGTKK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:31:20 2011 Seq name: gi|300496617|gb|AEAT01000081.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00133, whole genome shotgun sequence Length of sequence - 7647 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 5, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1016 296 ## PROTEIN SUPPORTED gi|15900011|ref|NP_344615.1| aldose 1-epimerase - Prom 1082 - 1141 8.8 + Prom 1021 - 1080 5.5 2 2 Op 1 4/0.000 + CDS 1111 - 2277 1570 ## COG0153 Galactokinase 3 2 Op 2 . + CDS 2302 - 3768 2016 ## COG4468 Galactose-1-phosphate uridyltransferase + Term 3788 - 3826 4.2 - Term 3774 - 3813 8.2 4 3 Tu 1 . - CDS 3841 - 5208 1806 ## COG1027 Aspartate ammonia-lyase - Prom 5361 - 5420 3.9 - Term 5445 - 5476 -0.7 5 4 Tu 1 . - CDS 5507 - 6400 1582 ## Ldb1751 hypothetical protein - Prom 6439 - 6498 5.3 - Term 6483 - 6518 4.2 6 5 Tu 1 . - CDS 6535 - 7413 1334 ## LDBND_1654 aggregation promoting factrelated surface protein - Prom 7566 - 7625 7.0 Predicted protein(s) >gi|300496617|gb|AEAT01000081.1| GENE 1 3 - 1016 296 337 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900011|ref|NP_344615.1| aldose 1-epimerase [Streptococcus pneumoniae TIGR4] # 4 329 5 334 345 118 30 1e-26 MKLTFKKYGQLQGRDLCEFVLENDHGMSVKLLNYGATLEDVAIPVDGAKRHVILSLKQAE DYSKERNFLGGTVGRIASRVWHGQWKNGDHILQLPINDGESHIHGGFGTDQQVWSFRPEQ GEDFVSVHFSLLDPDGHNGFPGNLQLEATYTLNNSGELLYDLTAYSDKLTIFNPTNHTYF CLDNLGTKIDQTKLFLDADYYLPVKEDGLPVGGMEAVEGTAFDFRMGKSMEDALKSGDAQ IALRKGLDHPFILNGQKTAAKVVASDGKVSMKMGTNAPAIVIYTANSFGKGEKQVKDLPQ YGGLTLEAQNAPASGNDLREIPLEPGKSWQLQVSWKF >gi|300496617|gb|AEAT01000081.1| GENE 2 1111 - 2277 1570 388 aa, chain + ## HITS:1 COG:SP1853 KEGG:ns NR:ns ## COG: SP1853 COG0153 # Protein_GI_number: 15901681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Streptococcus pneumoniae TIGR4 # 1 388 5 391 392 400 54.0 1e-111 MNTDFLKNNFKQTFQQEASDLFFSPGRINIIGEHTDYNGGHVFPCAISLGTYAAYGPRSD KKIAICSSNMDEDLVVFEIGDRELEKDPDHKWINYFKGMAAYVQDESREIDHGFNLYVWG NLPYGAGLSSSASIEMLVGHVLTEEYGLEIDPVKLAQLGQKTENEFIGLSSGIMDQFAVN MSKKDQAIFLDCASLKYDYLPLDLGDSEIIIMSTNKKHSLADSSYNDRVRECQEATRRLQ EKLSIDHLGDIDEETFDDYSYLINDETLLKRARHAVFENQRTIKATKAMANKDLDRLGRL INASHVSLHFDYEVTGKELDTLAGSAWQRDGCLCARMIGGGFGGSAIAIVKEDHAEAFKE KVGKIYQDTIGYAASFYEAKIVDGTHKL >gi|300496617|gb|AEAT01000081.1| GENE 3 2302 - 3768 2016 488 aa, chain + ## HITS:1 COG:SP1852 KEGG:ns NR:ns ## COG: SP1852 COG4468 # Protein_GI_number: 15901680 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 485 3 489 493 510 52.0 1e-144 MLIENFVQKIIANTDYQEMDRVYLFNRLQALVGDGDVEEQASGEDSLLQLVDLAVKRGKI PDDVTSREILADQLADFLTPAPSKVNGLFWNKYDQSPKAATDWFYDLSTHNNYVKKAAIA KNIVFSGKSSYGHPLEITINLSKPEKDPKAIAAAAKKKDTDYPKCDLCLENEGYLGDYGK NARSNLRIIRMNIGGEKWGMQYSPYAYFNEHCIFLDQIHEPMVINQQTLINLLEIVKTFP HYMVGSNADLPIVGGSLLSHEHYQGGGHRFPMMNAPVKKKLTFASYPQVKGGIVDWPMSD IRLISQDTEALIELGTKIIKSWQKYSDPGLGIVAEDKTARHHTVTPIAHKDGDEYVLELV LRDNSTSSDYPLGIFHPHQDKWHIKKENIGLIEVMGRAILPGRLKGELGEVKKYLLGQDN QIAKIHLPWAKKLQEKQPDINEENVDQLLQQALLDIFDQVLADAGVYKADAKGEAGWQKF LQQLGAKN >gi|300496617|gb|AEAT01000081.1| GENE 4 3841 - 5208 1806 455 aa, chain - ## HITS:1 COG:CAC0274 KEGG:ns NR:ns ## COG: CAC0274 COG1027 # Protein_GI_number: 15893566 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Clostridium acetobutylicum # 6 454 4 452 465 514 58.0 1e-145 MKAASRLEADSIGSLEVPTAAYYGVQAERARRNFEITHLKMSPVFLSNLALIKKAAASVN FEIGLLTKPQADAIKTACDEVIAGKFAEDFIVDPIQGGAGTSANMNMNEVIANRANELLG GKRGTYDLVHPNDQVNMAQSTNDTIPTAGKMTTILLSEKLVASLDKLEASLRIKADEFSD VIKMGRTQLQDAVPMTLGDSFAGYASMVSRLKKRLEKATMEMHEINLGATAIGTGINASQ YYEDHIAVQLSKLFGFELKQADDLFDATENLDSFVEVSGALKACAISLSKMSNDLRLLSS GPRCGFAEINLPAKQNGSSIMPGKVNPVIPEVVSQAAFLVCGHDTTITMAAEAGQLELNA FEPVVFYQLFESFTALTGAVDTLVENCITGITANKGRCKQLKEGSVGIATVLCPYLGYQL SAKIAKRALKEKRSVRELVLESHLMSEEKLDGLLG >gi|300496617|gb|AEAT01000081.1| GENE 5 5507 - 6400 1582 297 aa, chain - ## HITS:1 COG:no KEGG:Ldb1751 NR:ns ## KEGG: Ldb1751 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 297 1 297 297 507 97.0 1e-142 MKKFFISVAAALAIGTAFAASQVRPVAASSRQAVFTLPKGYTKANLKKAYWYSNLSKSQQ KKWLNNKKNAAWLKKWRKINVKGMQANTFDQSSWSESTKDNKTIVKLTNGHLNTSQSKTL AKYSLRLINQARAKLGLKKWKYSKGTQKLALEISKEYVANKKTIATGHYVPGIVRATNRV GLKLPGNYNYVEDMAGFKDGSQMTMTAMKKDIYFGLKTMMFGYRYANQSKVKQLSQYTEW EHAGDLMNTQGGKYDGDWDYYGFNVSYTNGTYSLHYIGVPAHLKWAYGGAYWGSFKA >gi|300496617|gb|AEAT01000081.1| GENE 6 6535 - 7413 1334 292 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1654 NR:ns ## KEGG: LDBND_1654 # Name: not_defined # Def: aggregation promoting factrelated surface protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 292 1 278 278 248 93.0 2e-64 MRACDKQRRIFLNIKSNVLKSVFAAGLALTGVAAIGLGTNGQADAATIGDSVTVDYIDGQ SIATWSNYYTATVTGSVKDGSSWKVVKTARDASGEKWYKIGNRQWIMAKYTTEAATASNS TYNANTTSTNTANNTTSSTTGYTTSYSSSANNYGYGSSYNYSYSANTGSANTSSYSYSAN TGSANTSSYSASTTSSSTSASTSTASASTSSSTSTSSSSSEEAAKAWIASKESGGSYTAS NGNYYGKYQLSLSYLNGDTSAANQEKVANSYVQSRYGSWTAAKAFWQANGWY Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:31:33 2011 Seq name: gi|300496615|gb|AEAT01000082.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00162, whole genome shotgun sequence Length of sequence - 690 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:31:49 2011 Seq name: gi|300496571|gb|AEAT01000083.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00012, whole genome shotgun sequence Length of sequence - 53982 bp Number of predicted genes - 42, with homology - 42 Number of transcription units - 17, operones - 13 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 42 - 101 4.2 1 1 Tu 1 . + CDS 174 - 1865 2483 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP + Term 1869 - 1927 10.4 - Term 1865 - 1909 -0.1 2 2 Op 1 9/0.000 - CDS 1932 - 3275 2181 ## COG2848 Uncharacterized conserved protein 3 2 Op 2 . - CDS 3275 - 3556 459 ## COG3830 ACT domain-containing protein - Prom 3587 - 3646 2.8 4 3 Op 1 24/0.000 - CDS 3650 - 6841 3993 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 5 3 Op 2 . - CDS 6841 - 7896 1479 ## COG0505 Carbamoylphosphate synthase small subunit 6 3 Op 3 15/0.000 - CDS 7898 - 8812 354 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 7 3 Op 4 . - CDS 8814 - 9266 542 ## COG0597 Lipoprotein signal peptidase 8 3 Op 5 . - CDS 9278 - 10957 2677 ## COG2759 Formyltetrahydrofolate synthetase 9 3 Op 6 . - CDS 10950 - 11306 278 ## LDBND_0912 hypothetical protein - Prom 11328 - 11387 5.0 10 4 Op 1 . - CDS 11461 - 12687 1291 ## COG1409 Predicted phosphohydrolases 11 4 Op 2 . - CDS 12703 - 13827 1718 ## COG0116 Predicted N6-adenine-specific DNA methylase - Prom 13870 - 13929 8.9 12 5 Op 1 . - CDS 14345 - 14809 720 ## LDBND_0909 cell division initiation protein 13 5 Op 2 . - CDS 14885 - 15445 834 ## COG4474 Uncharacterized protein conserved in bacteria - Prom 15485 - 15544 5.0 + Prom 15449 - 15508 4.9 14 6 Op 1 7/0.000 + CDS 15606 - 16238 423 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase 15 6 Op 2 . + CDS 16225 - 18537 3364 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Prom 18563 - 18622 7.3 16 7 Op 1 1/0.250 + CDS 18684 - 20612 2598 ## COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases 17 7 Op 2 . + CDS 20661 - 21662 1700 ## COG1052 Lactate dehydrogenase and related dehydrogenases + Term 21683 - 21737 9.5 + Prom 21720 - 21779 4.0 18 8 Tu 1 . + CDS 21823 - 22731 887 ## COG0657 Esterase/lipase + Term 22743 - 22774 2.4 - Term 22731 - 22762 2.4 19 9 Op 1 . - CDS 22766 - 23569 553 ## COG0561 Predicted hydrolases of the HAD superfamily 20 9 Op 2 6/0.000 - CDS 23604 - 24233 1044 ## COG0177 Predicted EndoIII-related endonuclease 21 9 Op 3 4/0.125 - CDS 24255 - 24902 900 ## COG3935 Putative primosome component and related proteins - Prom 24922 - 24981 5.3 - Term 24914 - 24954 8.1 22 10 Op 1 . - CDS 24993 - 26291 1947 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases 23 10 Op 2 . - CDS 26353 - 26847 597 ## LDBND_0898 hypothetical protein 24 10 Op 3 . - CDS 26840 - 29632 3558 ## COG1199 Rad3-related DNA helicases 25 10 Op 4 8/0.000 - CDS 29661 - 33344 4935 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 26 10 Op 5 . - CDS 33371 - 36910 4397 ## COG3857 ATP-dependent nuclease, subunit B + Prom 36849 - 36908 5.6 27 11 Op 1 5/0.000 + CDS 37044 - 37955 842 ## COG1577 Mevalonate kinase 28 11 Op 2 5/0.000 + CDS 38011 - 38970 962 ## COG3407 Mevalonate pyrophosphate decarboxylase 29 11 Op 3 3/0.250 + CDS 39048 - 40130 1414 ## COG1577 Mevalonate kinase 30 11 Op 4 . + CDS 40141 - 41166 1094 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases + Term 41203 - 41253 -0.4 - Term 41305 - 41359 14.2 31 12 Tu 1 . - CDS 41372 - 42307 1458 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase - Prom 42349 - 42408 5.0 32 13 Op 1 24/0.000 - CDS 42422 - 44905 3758 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 33 13 Op 2 . - CDS 44920 - 46851 2819 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - Prom 46919 - 46978 5.5 + Prom 46802 - 46861 5.3 34 14 Tu 1 . + CDS 46926 - 47588 779 ## COG0344 Predicted membrane protein + Term 47669 - 47704 6.0 - Term 47657 - 47692 6.0 35 15 Op 1 35/0.000 - CDS 47698 - 47991 259 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 36 15 Op 2 . - CDS 48001 - 48690 841 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 48729 - 48788 2.6 - Term 49461 - 49514 1.5 37 16 Op 1 16/0.000 - CDS 49569 - 50429 418 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 38 16 Op 2 34/0.000 - CDS 50441 - 51181 436 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 39 16 Op 3 17/0.000 - CDS 51191 - 51865 363 ## COG0765 ABC-type amino acid transport system, permease component 40 16 Op 4 . - CDS 51846 - 52205 172 ## COG0765 ABC-type amino acid transport system, permease component - Prom 52362 - 52421 5.9 + Prom 52738 - 52797 6.5 41 17 Op 1 . + CDS 52881 - 53288 415 ## COG0789 Predicted transcriptional regulators 42 17 Op 2 . + CDS 53281 - 53478 149 ## LAC30SC_05735 hypothetical protein + Term 53717 - 53755 6.0 Predicted protein(s) >gi|300496571|gb|AEAT01000083.1| GENE 1 174 - 1865 2483 563 aa, chain + ## HITS:1 COG:SP0966 KEGG:ns NR:ns ## COG: SP0966 COG1293 # Protein_GI_number: 15900843 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Streptococcus pneumoniae TIGR4 # 1 561 1 549 551 409 41.0 1e-114 MAFDGLFIHSLLNELQDEITAGRLHKIYQPFNNDLVLVFRKDRKNKQLLISANPEYPRLY LSKESFSNPNVAPLFVMVLRKYLEGSVLQEISQVGLSRIVNFSFSNRNELGDEIQLILSV ELMGRHSNVILYDKQSGKIIDLLKRINPDENRARLLLPKAKYELPPLTPGINGFTLTESE FSSLKKEYPTPADLAKQMDGLDGDDRQELTGYLEDDYSFSSLKTFYNQFSSPKAYVLVTP KHKRRIYPYLPYHLEMTKESSSTNLNEALDEFYAYQANRDWVKQRSQQVTRVVTNETKKL QKKLKKLEKQLDSAENSENLRVSGELLTAYLSQVKPGMEKIDLPNYYEGNQPMTIKLDPA LSPQRNAQKYFKRYKKMRDSIKHVTEQIEITEENLRYLDSVQTEIDNADPEDVEAIKEEL INQGYLRAEQKKRRKPKLTEKSLNKFKLSSGKTVLVGKNNLQNDWLTLKKADKNHYWFHV KNIPGSHVILTDSQPSDSDIQESAEIAAYFSKAKNSAHVPVDYIQVKRIKKPNGAKPGFV IYTGQKSIEVTPEADEILAKRID >gi|300496571|gb|AEAT01000083.1| GENE 2 1932 - 3275 2181 447 aa, chain - ## HITS:1 COG:lin0538 KEGG:ns NR:ns ## COG: lin0538 COG2848 # Protein_GI_number: 16799613 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 447 1 451 451 602 71.0 1e-172 MDLRRIMETVNMIDNENLDLRTTTMGISLLDCIDSDSDRACQKIYDKITTKAENLVKVAR ELETEYGIPIANKRITVTPISLIAAASGDSDYVKYAITLDKAAKAVGVDLIGGFSALVHK GYQNGDRVLIKSIPQALKETERVCSSVNVGSTRSGINMDAVKEMGQIVIENEKINPLNNG NLVIFCNVVEDNPFMAGGFHGVGESDVALNVGVSGPGVVKTALEKVKGESMDVVAETIKQ TAFKVTRMGQLVGQEASKRLGVDFGIVDLSLAPTPAQGDSVANILEEIGLESVGTHGTTA ALAMLNDAVKKGGIMACSHVGGLSGAFIPESEDAGMIAAAEKGILTVDKLEAMTAVCSVG LDMIAVPGDTPAETISAMIADEAAIGMINNKTTAVRVIPVPGKDVGDSIEFGGLFGYAPI MPVHKESSAAMINRGGRIPAPVHSFKN >gi|300496571|gb|AEAT01000083.1| GENE 3 3275 - 3556 459 93 aa, chain - ## HITS:1 COG:lin0537 KEGG:ns NR:ns ## COG: lin0537 COG3830 # Protein_GI_number: 16799612 # Func_class: T Signal transduction mechanisms # Function: ACT domain-containing protein # Organism: Listeria innocua # 1 88 1 89 89 85 53.0 1e-17 MRAILTTVGQDKTGIIAGVSSFLAEKDINILDLSQTIMNGYFTMMMVVDVSDEADFSALS TELKELGKKLGVEINIRNEKMYAAMHELGGGLE >gi|300496571|gb|AEAT01000083.1| GENE 4 3650 - 6841 3993 1063 aa, chain - ## HITS:1 COG:BS_pyrAB KEGG:ns NR:ns ## COG: BS_pyrAB COG0458 # Protein_GI_number: 16078616 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Bacillus subtilis # 1 1058 1 1053 1071 528 31.0 1e-149 MPRENDLNKILIIGAGSALVGNVANTDLLTKSAIEALLEENIQVVLVNPNPASVSTDPLP GLTVYLEPMTLDFLKRILRMEEPDAIMTAFGSLMALDVTKKLQADGILHQMGIKLLTINE RAISMSNPQKRTRFLEANHLPVGQTWFLDSLGLKYDEHLQEQLENKLSFPILLIKKYYFE RDDHISFKSSRDLAQYLRQESQDRDFRPASYRMTEDLSNCEEVILDLLRDEDGNLCFVGA TGSLEPVGIDSGDSVLIKPLLTMNNDQIQVLRAEAGKIADKLQLVGFLSVHFAISHRGTE MVYKLLAVKPRLTRTTVLDQKTSLYSIGYVLAKLAIGLRLNEVTDPATGLCAAIEPVSDT VSIKIPYWSFAKTGYNHYQLGKHTQSTGEAVGIGRNFESAFFKALISSNDLEVLWSAFIK ERGESDEVILDDLRHPNEMHLVQLLAALSQGIDYQAISSVLNIHPVYYQKLRYLVKIGRD IAHAGELDHDLLLKAKIRGFSSDLLAKLTKMDVHDIFPLLNEKDVRPSFSAIDDSAGVYQ PEVKVYYQSYGVESELEFSKDPEKKKVLLLGMPPFQVSVTSEFDYMLYHALAALKKEGYE TVLLSNNAESASMDYHLADRVYFESINLDSIITICEEEGITDVVTQFSGKQVSALRLPLM SHGLKIFGQHEIDRLLPISHLDTAKISEVKRVPYLATTDYQAVLAFVARVGYPVLVGGYH QKSKQKSAVVYDQPALEKYFRENQVDDYTISQFISGMKYEITAITDGEDVTIPGIVEHLE QSGSHASDSIAVFGPQYLSKEQAEKLRVETIKLIRSFKIRGIFNLHFLLKGREIYLLQIK TYAGHNLAFLSKSMNKDLVEYAVKVLAGRKIADLGYPNEVWPVDEFIHVKMPVFSYLNYS SDNTFDSRMKSSDAVMGRDSRLAKALYKGYEASDLHIPSYGTIFFSVSDEEKQEVANLAK RFARLGFKITATEGTANILAEAGITTGVIAKIQDGSRNLLERIQTHRIVMVVNVVNLSDS AVEDSIKIKDQALNTHIPVFSSLETVQLILDVLESLALTTQPI >gi|300496571|gb|AEAT01000083.1| GENE 5 6841 - 7896 1479 351 aa, chain - ## HITS:1 COG:SPy0833 KEGG:ns NR:ns ## COG: SPy0833 COG0505 # Protein_GI_number: 15674869 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Streptococcus pyogenes M1 GAS # 2 350 3 352 360 246 39.0 4e-65 MKRYLILEDGSSYAGDGIGAMITATGELAIQTSNYGYQEVLTDPSNAGKIIVFTTPMIGS NGINAVDYESIQPSVRGVIANDIALNITDNDTFQSLGDFLQEKKVPAIFNVDTRALVRKL QNLGPLKASIMDTNDEHAFDQIRALVLPKNKSSLVSTKNAYAAPNVGKTIAIIDLGLKHS MLRELSLRQVNANVLPYNATVRDIKTLRPDGIIISNGPSQAKEVLPYLRQILDEYLGKLP ILGVGLGFLAISAYLDLSLVDLPQYQNGTNFPVIGQSSGQIWQTAMNIGQLVLPDDTAMT FNEEYFDLHNELLAGFSNDKLQLLAVAFNPEGAPGAEDAQVIFDDFLKLVK >gi|300496571|gb|AEAT01000083.1| GENE 6 7898 - 8812 354 304 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 41 289 41 280 285 140 35 1e-32 MNREYELTAEESGQRLDKYLAGEMTNLSRSRIKELVQAGEVLVNGKKSKVSYKVQKGDLI QVTVLPLEPLKLEAENIPLDIVYEDEDVIVVNKPQGMVVHPAAGHPSHTLVNALLYHTRD LADSPEGFRPGIVHRIDKDTSGLLMVAKNAAARESLEKQLAAKSNKRQYLAIVHGNFAEE EGTIDAPIGRNPKDRKQMAVVEKGKSAVTHFKVLEQYQGYSLVECQLETGRTHQIRVHMA YIGHPLAGDPLYGPRKTLPGHGQFLHAKTLGFEQPSTGEWLEFSVQPPEIFQQTVADLRK KRVK >gi|300496571|gb|AEAT01000083.1| GENE 7 8814 - 9266 542 150 aa, chain - ## HITS:1 COG:SPy0826 KEGG:ns NR:ns ## COG: SPy0826 COG0597 # Protein_GI_number: 15674864 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Streptococcus pyogenes M1 GAS # 11 140 12 141 152 110 49.0 7e-25 MQIVGLVIAALIAAADQALKYYIVTNYRLGEVHDVMPGLFSFTYIQNNGAAWNILSGKMW FFYVVSAVAIAVVLYYYFNKEYSHWMFKSGLVLVLGGIIGNLIDRLHLKYVIDMIQLDFV QFNIFNLADAAITVGVILIFSYLLFIERED >gi|300496571|gb|AEAT01000083.1| GENE 8 9278 - 10957 2677 559 aa, chain - ## HITS:1 COG:SP1229 KEGG:ns NR:ns ## COG: SP1229 COG2759 # Protein_GI_number: 15901091 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Streptococcus pneumoniae TIGR4 # 2 559 1 556 556 585 54.0 1e-166 MVKSDIEIAQAAEELPITDVAAKLGLTSQDLEPYGYDKAKVNWQAIKRSEENGHLGKLIL VTSISPTPAGEGKSTMTIGIGDAINNQLGKKTVIALREPSMGPVFGMKGGAAGGGYAQVI PMEDINLHFTGDMHALTSAIDNLSALVDNYIYQGNELGLDPEKIVIKRGLDVNDRTLRKV TIGQGSKFNGVERPSSFQLTVGHELMAILCLSKDIADLKERIGKVLVGYTYEDEPVFIKD LGFQGAIAALLSTALKPNLVQTLEHTPAFVHGGPFANIAHGNNSILSTNLALHLSDYVLS EAGFGSDLGGQKFLDFVSTKLEKKPDAAVVVATVRALKYQAEKSTDHLKEENLDSLKEGF ANLDRHMNNVRSYNIPVLVVINKFPTDTEAELDLLKSLIEEQGFPCEIVTAHDEGSKGAK AAAEKIVELADKSDYEIKRSYDLDDDLETKIEKVAKRIYHAADVEYTDKAKDQLVKLKKM GKDKLPVIIAKTQYSFTDNVKELGAPTGFTLHVKGLSLRNGAGFVVVSTGHILDMPGLPK HPAALDIDVDETGKISGLF >gi|300496571|gb|AEAT01000083.1| GENE 9 10950 - 11306 278 118 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0912 NR:ns ## KEGG: LDBND_0912 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 118 1 118 118 210 95.0 2e-53 MKKHLIFLGDLGVIYYSWLLLVLFLTVIFCLEGSQFINLPTVITGIIFLLLLVFTWKKSY ISFDGQTRLRLPYRKEFVLEEKPELVTSWRGFEVHRARVSKHQSIDYLVFKRKRDRNG >gi|300496571|gb|AEAT01000083.1| GENE 10 11461 - 12687 1291 408 aa, chain - ## HITS:1 COG:lin2791 KEGG:ns NR:ns ## COG: lin2791 COG1409 # Protein_GI_number: 16801852 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Listeria innocua # 16 329 46 349 443 159 32.0 1e-38 MKTITDSERPDFWLISDPHLIADDLHDFGARFKKMRQTSAGKGIAYQDQALRAFVRKVVR AKPAALIITGDLTFNGAKRSAERLGEIFAPLKEAGIALLVIPGNHDIYDGWARSFSGSEE RRVAQISPADWKEIFSASYDLAASQEPGSLSYSVNLNPHWRLLLLDSNLYSSQFSYTHPM TSGAIDDGERRWLSQELVEAKRLEQDVLFFMHHNLYSHNSVVHDGFKLNNAGEIVQLLSQ YPVRCAFSGHIHAQHIMSGWVPVPEVVSSCFAESDQGYGIVELTANSLSYRRHAFDIDNF LTAEEKKLPPFADFHAYLKEVFDQSNNLLLRQHLLKGAAKDLPEAVEMLKKMHWDFFTGQ SYKSEAEIAAIYESSAYRTLLAAMPSMKSYISSLYESTQSSQKLDLTW >gi|300496571|gb|AEAT01000083.1| GENE 11 12703 - 13827 1718 374 aa, chain - ## HITS:1 COG:SP0373 KEGG:ns NR:ns ## COG: SP0373 COG0116 # Protein_GI_number: 15900296 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Streptococcus pneumoniae TIGR4 # 2 373 3 378 385 369 48.0 1e-102 MEEYQLYTTMGAGFESVVAKELQSLGYETTTENGRVFFKGSQKDIVRCNLWLRTADRVKI LLKEFTAKDFSTLYDETYAYDWAMLLPVDAAFPVKGRSVRSKLHSEPDVQSIVKKAIVDK MAAQYHRRGKLPESGSLYQLDVHIYKDTVRLSLDTTGESLFKRGYRIEHGGAPLKENFAA SLIKLTPYDGTHPFIDPMCGSGTLPIEAALIARNIAPGTWRKFAFDDFDWFDPSLHEELL EEAKSQVKPAEAPIWASDIDQSILEVAKLNAHNAGVLQDIRFKQVAVKDFTTDLENGVIV SNPPYGKRLKDKQGVEELYRQMGEVLRPLTSFSQYYLTADPDFEKCFGQKASKKRKLYNG NLRADYYQFWAKRK >gi|300496571|gb|AEAT01000083.1| GENE 12 14345 - 14809 720 154 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0909 NR:ns ## KEGG: LDBND_0909 # Name: not_defined # Def: cell division initiation protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 154 1 154 154 242 98.0 4e-63 MADLNDIKLSAQDILKKQFRSKVKGYDPDEVDSYLDQIISDYETFQDIIEDLYGRIGELQ GQVIDAEKQVKQEEQAVKEIPAAGPASATTESKEEDVKTYVPSSQRQRADFSLDNSSTSG EISTNMAIIQRLSTLERKVYNLEQRVYGIQDLQK >gi|300496571|gb|AEAT01000083.1| GENE 13 14885 - 15445 834 186 aa, chain - ## HITS:1 COG:SA1280 KEGG:ns NR:ns ## COG: SA1280 COG4474 # Protein_GI_number: 15927028 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 180 2 180 187 115 33.0 5e-26 MQRIWISGYRSYELGTFGDKDPKITVIKYAIKQRLTNLLEEGQLDWVITGANLGVEQWSA EVALELRQDCNLRLAVMLPYLDFGSRWSENNQLKLQNLKNQADFWSATSKGPYQGGRQFR EYQQFMFQHTDRALLVYDPEYPGKSKYDYEMIEKYLEKRDDYQLDLVDYYDLEQAARDYE ENQREW >gi|300496571|gb|AEAT01000083.1| GENE 14 15606 - 16238 423 210 aa, chain + ## HITS:1 COG:SA1282 KEGG:ns NR:ns ## COG: SA1282 COG3331 # Protein_GI_number: 15927030 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Staphylococcus aureus N315 # 2 206 1 206 208 205 50.0 5e-53 MVKYPTGSVMPLRAAQRQGEKALLKKASFSDRGMTLEQQINESNQYYLDAGIAVVHKKPT PIQIVKVDYPKRSRAVIREAYFRQASTTDYNGVYQGYYLDFEAKETRNKTSFPLKNFHEH QILHLEQCLDQEGICFALIGFMTLERYFVTPASFLIQAWQNWKAAGKSSMTLAEIEANSF EIKSGFRPALPYLEAVDRIIADRKQEHGNK >gi|300496571|gb|AEAT01000083.1| GENE 15 16225 - 18537 3364 770 aa, chain + ## HITS:1 COG:SP0369 KEGG:ns NR:ns ## COG: SP0369 COG0744 # Protein_GI_number: 15900292 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 28 647 6 637 719 448 43.0 1e-125 MATNSPEQKNTRMARLHANDGAKKARPVLRVIKWLFLLFFLLIISGVGVFAYYAKDAPSI STAKLQSGGTSSFYTTDGKFLMSLGSQTRVYAKDSAIPQTLKDAVVSIEDKRFYSESLGI DPLRIVSSFLTNVKSSSTVAGGSTITQQLVKLTCFSTASSQRTLSRKAQEAWLAMKVERE YSKDQILEFYINKVYMNYGTYGMGTAANYYYGKSLKQLDLAQLALLAGMPNAPVAYNPYL YPKKAKYRRDLVLKAMYDNKKITKKQYLVAKAEDVQKGLKKHTTSTESKLRKVDDAYIKE AIAEVQANGYDPYNDNLKITININQAAQNKLYSLANSGSVAFTSKKMQIGATVINPKNGH VIAILGGRKLPSVQLGLDRAVQTGRSTGSTIKPVLDYAPAIQYLNWGTSHILQDTKYTYP GTNIQLYDWDNTYQGSMSMRYALVQSRNVPAVRTLNEVGISRASLFARKLGVNVSANAGL STAIGADASSLQMAAAYGAFATMGVYRKPQFVSKIETADGQVRKYNSAGKRVIKKATAYM ITDMLKGVFTSGTGTTAKVSGIYEAGKTGTVKYSDSDLVKYPSYSSTPKDSWFVGYTKQY SIGIWTGYDNLKDGTISGVGQYSAQLIYKYMMSYLMADEDSTDWEMPATVVKKRIVKNTE DKVASPGQPYTWELFVKGHAPTDADYVSSSSDTSTASSSAVTSSVKSSSSSSSSKSSSSS SSSEKSSSSSSSSSSSAASSSSAASSSQSSEAPKTEENKRDKNNDDKQNN >gi|300496571|gb|AEAT01000083.1| GENE 16 18684 - 20612 2598 642 aa, chain + ## HITS:1 COG:FN1128 KEGG:ns NR:ns ## COG: FN1128 COG1506 # Protein_GI_number: 19704463 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases # Organism: Fusobacterium nucleatum # 1 642 1 660 660 438 39.0 1e-122 MDAIKIEDFLHYANLGKLKAKGQNLVWVKGLPDASKKDKYLYTLETLQDGQVSPLSSFGQ ERDFVFLDENTVCFAGNRTKEKDKTFIYQLSLKGGEAREIAALEGEDFAVENVLVDGRLL LSRRVDLREAEKKQDPDEKDYVVLDEFPAYFNGDGIISKFRDRLFLFDPAKKELTELLKD DPYFNFDLHYVDGTDLYFTGDSYTQSKARKSALYQLDLNSLEYSQLLPKEEWSIFDICVL KGQLYLVATDEKRYGSEENPQFYKYDPEFKTLSLAAAWEDCWGDCVDTDLCLLDVRTSRV FEDCLYFTTTKVDHTVLECFDGEKVTPAFEFPSIEFFDFTSDGTCWFTGPNANETQQLYS YKDGQLTKHSSYNEDALKGRYVASAVQVDYQDYAGNTQHGWVLYPKDFAEKQKYPAILDV HGGPKTVYGTPFFHEMQVWASQGYFVFFANIYGSDGQGNDYANMRGHWGREDYEDLLKFT DAVLAKIPQIDAGRLGITGGSYGGYMTNWVIGHTDRFKAAASQRSMSNWLSDAFMSDVGP WDDLYSIDANNLDEKLDYAWQQSPLKYAKNVTTPTLFIHSLEDYRCPLPEGMQMFRALLY YGVESRMCLFKGENHELSRSGQPKHRIRRLKEITAWFDQHLR >gi|300496571|gb|AEAT01000083.1| GENE 17 20661 - 21662 1700 333 aa, chain + ## HITS:1 COG:SA2312 KEGG:ns NR:ns ## COG: SA2312 COG1052 # Protein_GI_number: 15928103 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 332 22 351 351 221 36.0 2e-57 MTKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQALTSATVDLAEGCSSVSLKPLGPVDEE VVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLR KIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVA YNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKKMKKSAYLINCARGEL VDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSA FYTETSIRNMVQICLTDQLTIAKGGRPRSIVNL >gi|300496571|gb|AEAT01000083.1| GENE 18 21823 - 22731 887 302 aa, chain + ## HITS:1 COG:alr0079 KEGG:ns NR:ns ## COG: alr0079 COG0657 # Protein_GI_number: 17227575 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Nostoc sp. PCC 7120 # 29 280 150 382 411 83 25.0 6e-16 MEIKKWSYPDFPEYQTDLPDVKCIDSTGDEVRVLYHPNVEYADYGGQKLTLQVLEPSTRN HPDDLTYPIFVYVQGSAWMKQNVYRDLPQMAKIAALGYVVAVVEYRGSDVASFPKPILDA QNAVRFMKLHGPEYQGDPKRVILAGNSSGGHTAVYASFFPEGEDNLYPDVNAKVSGVVDF YGSVSVMREDSNPTTINHLQADSPEGMEMGHVDLRENSDLRRKLSVECNISKDTDILPVL IIHGTKDRTVNTIGSTDLYLKLKECGKEASYILIKGADHGGGEFTSPAVLKELDAFIKHV LA >gi|300496571|gb|AEAT01000083.1| GENE 19 22766 - 23569 553 267 aa, chain - ## HITS:1 COG:lin0440 KEGG:ns NR:ns ## COG: lin0440 COG0561 # Protein_GI_number: 16799517 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 1 261 1 261 270 166 36.0 3e-41 MIKLIAFDMDESFMPRKGFYERERWARDFDLLRAKGIRVLPISGDQYQQVADFFPMKDEM TIGGLNGSVIFEKGQLIKADEIDRSMVQKIMQIIAENGLAQRTMLCGINYCYFLEQADPA FRERMNFYFSHNQNVSSFLPLPDDKFTEIVIVPGTGRMDETEEKLKAVCAEKLQIFNSGV ASIDILQPEVSKGNSLKWLASRHDLSPEEIMAFGDGLNDIEMLKFAGHSYAMKNAREEVK EAAKFVTKLPAAENGVLDTIEKEVLGM >gi|300496571|gb|AEAT01000083.1| GENE 20 23604 - 24233 1044 209 aa, chain - ## HITS:1 COG:SP1279 KEGG:ns NR:ns ## COG: SP1279 COG0177 # Protein_GI_number: 15901139 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Streptococcus pneumoniae TIGR4 # 7 207 2 200 209 211 54.0 6e-55 MEKDEKLLSDEEARNVLKRIDAMFPEAKGELNWDNRFQLLCAVLLSAQTTDKMVNKVTPQ LFADFPTPEAMVAASQEEIEADISHLGLYHSKAKHLKEMAQTLVAEYGGQVPGKKEDLVK LAGVGNKTANVVLAEGWGVPAIAVDTHVSRIAKKFKIVPEKATPLQVEKRLEELLPKDEW IHTHHAMIFFGRYKMPARAKNPDPYSYLD >gi|300496571|gb|AEAT01000083.1| GENE 21 24255 - 24902 900 215 aa, chain - ## HITS:1 COG:BH1697 KEGG:ns NR:ns ## COG: BH1697 COG3935 # Protein_GI_number: 15614260 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Bacillus halodurans # 9 215 11 207 233 120 32.0 2e-27 MASYNFYRQLGVTSISNGLIAYYARLGLTEAELALVLQLEAFFQRGNYFPSNEKIAANTN FSVSDVTLLIQSLLDKGCLSLRQAKEASGKISSRYGLDELYDKLDQYLDQYVQVKDMNGE VLEEAKDSLNNDPMSDLAREFEIEFGRYLTPIEREEIQDWLNLDHYAPEIIKLALREAVL SRAMSFKYVDRILLNWQRMNLKTASEVQQYLERNR >gi|300496571|gb|AEAT01000083.1| GENE 22 24993 - 26291 1947 432 aa, chain - ## HITS:1 COG:BH1696 KEGG:ns NR:ns ## COG: BH1696 COG0017 # Protein_GI_number: 15614259 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Bacillus halodurans # 6 432 4 430 430 529 57.0 1e-150 MTELISIRESAKHVDEEVRMHVWLTDKRSSGKIVFLQLRDGTAFFQGVVRKNDVSEEVFE AAKGLRQEASFYLTGTIHEDARSHFGYEIQISDLEVVSNNEGYPITNKEHGIDFLLDHRH LWLRSRRPFAIMQIRNRIFKATVDFFENEGFVKFDTPLLMHSAPEGTTELFHIDYFDHDA YLSQSGQLYGEVGAEAFGKIFTFGPTFRAEASKTRRHLTEFWMMEPEMAWMHQDESLDLQ ERFLSYVVGQVLEHCEYELSILGRDLDKLRPAAEGNYTRLSYDDAVKMLQEAGKDFKWGD DFGAPDEAFLSEQFDRPFFIVNYPVAIKPFYMKKNPENPLTYLCADVEAPEGYGEIMGGS EREADYDTLKAQIEEAGLNLDDYSWYLDLRKYGSVPHSGFGMGFERVIAWICKLDHVREA VPFPRMINRMQP >gi|300496571|gb|AEAT01000083.1| GENE 23 26353 - 26847 597 164 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0898 NR:ns ## KEGG: LDBND_0898 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 164 1 164 164 264 97.0 1e-69 MLNERVKNFLQYLAWLFFFLFLLYAGTVAVVARAAKPYSQQKEKVAKLVKQTSMKQIDKY YHLSRGVKSYSASGKTSKGKAAYFIYLPGKHKAYYYSASDGVSESTVKSSFQKSYPKKAI KEVNLGWYQKQAVWEVTAVNADGSYCYAIYKFKDGQLLSLVDKL >gi|300496571|gb|AEAT01000083.1| GENE 24 26840 - 29632 3558 930 aa, chain - ## HITS:1 COG:lin2013_2 KEGG:ns NR:ns ## COG: lin2013_2 COG1199 # Protein_GI_number: 16801079 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Listeria innocua # 283 919 22 657 668 229 27.0 2e-59 MADFFAGGSFAVVDLETTGTRKEEGDRIIQFGCAIVKDGEVVKTYSFMMNPHRKIPLAVT NLTGIDQKMVAGQADFKHYAPKIREILQDTVFVAHNVNFDFPFLNYELTNAGFEALTCKA VDTVELAKIAFPTLPSYKLRDLTASLEIKHANPHKADSDAYGTAVLLLKIIDKLASLPQA TLNVLGSLASGLIRDTGDVIKVIADQSRQSRRKLPKDKMQVRNLVLKRQEIPAVEHGENG HFPVKDTDKRKLFKGKINYRQAQVDLIDRLHDFVGDAGQRVMLAEAPNGTGKTFAYLFAY AYQLYSGKKLVIATPTKVLQQQLLDQEIPQLLRVTGLGLNAEMVKSSSHYLDLDGFAQTL YQNSPNKATLLLQMQILVWLTETTTGDMDELQLTSQQLPIFNQLKHPGDARVASQFASVD FWNLARRRQEQANILVTNHAYLVNHYMDSIWGQNPYLVIDEAHRFSENLQTARMDSLRLE AIWGSISHLRNLLYFTDNNLLRQSEGNVQLQFMLDLLDQESLDLIHSLNRMQKYLYQHKG QAISQVVLPNKRLQLTIQGQDLFPENSQFRPLLRQFQQQLEQVRIHTNQIRYLLEQEKDR FLTDEESLLEELNDQVDLLEFYTGKSYQLADLLNQPLLDHLGFVVNVTNPEDALSSNLYW LSLDSSEELHKIYNRFDHISMISATITNDGNFAFAKQFLALPNLGVSCYKGKASFPMADH LEILAMDEGQPEPDSPRFLEELKNILTKDLSGQKHVLCLFTNLDLIKQLYFELLNDPRVK DYELLAQGLTGSNERITRRFVIAERSILLGADSFWEGVDFHNCGIDLVIATRLPFESPDL PEVSLRQHYLAQRGWDVFQEDSLPRAVLRLRQGCGRLIRGEDDYGQFLILDPRIWTKSYG PAFRSSLPAPVQRVKASELKKKLKFERKNA >gi|300496571|gb|AEAT01000083.1| GENE 25 29661 - 33344 4935 1227 aa, chain - ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 5 1210 11 1216 1232 547 32.0 1e-155 MAVKYTPDQARAIESRGQDILVSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRA AASEMKQRIKQRLQDRLQEETDASQADFLRRQLAEIDTAIISTIDSFCLDVIRRFYFAID IDPDFSILTDATQIELLKERALRDVENGYLQNEDQAKKDRFLALYDAFAGDSNANSARDL LLDLYQFAMARPNYRAWLQKLADPYQLETSDVVDSALWQEKIKPYLEEEFSNLADKLTAL MAEADFDHEKFAKYQPAFTAFATSLASYRESLATDDPFDRQRELLAACQFDGTLRTNKEI ADFVEEAKEVKEAGKQLVFNVYTSFYASSNADQQALLAKGAEIASAAAEVELAFIDRFNE LKRADRVLDFSDMEQLAYEILTQDSSNSDLARAYYQSRFKEIMVDEYQDTNALQDGLIQR LKKAGKNNLFMVGDVKQSIYGFRQAEPSLFIAKYDEYGQENSAGKQRIIFAENFRSSQPV TQTVNLIFDSLLTKDFGGVDYQKEGQLKFAAGYDPEAALPTETEVLYQEDSSATDDDGEL NQGDLAMVISRIQKLIADQTPIFGPKTGQTRPVSYGDIAILTRSKTSNLDIKQEFDRYGV PLFVMDVQNYFQTFELTVIMSYLKIIDNPDQDIPLVAVLRSPIFNFSSSDLAEIRLVNKS VSFYAALRTYAKKDTDLAARCRDFLAQLQDLRDFSLSHRISELLWTIYERTSFLEIVTAM TNGQQRRLNLTALYERASAYESSGFKDLYQFINFIARMRKSQKDLAQPILSENADNSVKL MTIHASKGLEFPIVFVLGLEHRYNYQQDITGSYVLDASGLGLSFAYPFDEAEYRADTLAN AWLKIAKKQKLLEEEARLLYVALTRAKQKLILAANIKLPARTDLAGLEEKWAKEISAGRL PLLDKMKVAKPLDFLAPALARAKQVKRLGEKAVSDLAAGQEGSLVFVHFDPKKDQAQLPD SEAVAASGADLTEDEAAVFKQAEKLYAFSQGGYPYLDASRTTAYQAVSEIKKVFGDPIED ELADSHISELQSANRYLQPIDTEPDFLFQNTVSSAELGTASHLVLQYYDYAKGDKDAIDS CIAGLVEKGRLSQTLASKLDREALSWFVKSDFAKDFYQQPDRLHREENFATILSPKTLFK DFSDFPGKILVHGTIDGYYEAENGIILFDYKTDHVNPRKQEEAIQKLKEKYQGQLRLYER ALNESGRLPVLKKYLVLLSCREIVEVD >gi|300496571|gb|AEAT01000083.1| GENE 26 33371 - 36910 4397 1179 aa, chain - ## HITS:1 COG:BS_addB KEGG:ns NR:ns ## COG: BS_addB COG3857 # Protein_GI_number: 16078126 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Bacillus subtilis # 30 1173 32 1158 1166 291 23.0 5e-78 MIKIITGRQSDPLQTEIIGRAARNYLAQPGKDTFIIVPNHIKFNTEVAAIGKVAQLQGRE ETSVKNLHVLSFSRLAWFFFKKADLLMSESLDDAAATMILEQIIDKRRDELLLFKNSHAN SGMIKQVYSTILQVHTGQLDLGNLLERAADPAVALDLDNETRDKLHDLDLIYQDFLEIVS EKHFATKDELNIQLNQLLASRPDLVSQASFYVTDFSHFSIQEKMTMQLLAAFASEMTFAF KTADGSVIEPAAGEYDYVVQKTIKDLTGYFSAHDFAWEREKIASPVSPARDLNQAWQGQG QPDLDNLQLVKADSRYAEAYFVARTIYDEVALKGCQYRDFLVLAPNLQEYETYLAPILRQ NQIPFFDDLQQQMKYHPLVLLLENLGKLLQQAGDTPALLSIMKTRLLIPDWYLEGDAEAG EAAYLRDVDQLENFALAHGIKYSLWQKPLKDFTKAQVIALDQEQYQKWLDRLDKLRDFFV SKISRLASQLKSEKDSMTAVKLFFDFLVKNGVSARLEAWRLKASESGDLQQAQQPEQCWN LLLSLLKDYLLVNPENFAWADFFKMLTAAFSQANFATIPASLDAVTLSEYGMVQTSGYKQ VFIIGAANGSLPQINDQPNFLTTENLASLADFFDQEAYLEDSQQLRNLDQEYQFGNALAL ASDRVYISYPVINSNNDLLDPSIYYKRLLKLVNGREYRQRDLPDTAEKDRTEFARQLLLF LTSPRASLGYLTYAEENSAQSPLVAKLVELSRQYEEEKAEEIAEGMAYDNNPQDISEDLA ERLYGKDLLSSVSQLESYYQNSFEYFLNYGLRLRPRAENELNAIQSGNYFHRTFELLLKE MQKKNIEIDKLSELDLELLLKQVRSEILREPLYQQFLRDPFNEYLFKAFDKTTSKVAQSY RRKQQENKMRATYGELAFGPAEKLAGLVLPLKKFAGQRKISLRGKIDRVDLFNGDQHVLG QLIDYKSSDHSFNLARFASGVDLQMIAYLDVLEKNQDLLAGGRQFDLLGAFYQYVTRKLN SINSSSTGALFDSKLQLKENLLGGEDKLKLSGVFISEPAWYQEVDKALEKKASSPVYRGL KLNKSGGFGKKDNFFSQDEMQELLEYVEALIEDAASEILSGKIALNPFRQGNNTGLAFSD YKDIFYFDQQLPTNSYRDLPSLKKADLLALVEKRLRQRR >gi|300496571|gb|AEAT01000083.1| GENE 27 37044 - 37955 842 303 aa, chain + ## HITS:1 COG:L7866 KEGG:ns NR:ns ## COG: L7866 COG1577 # Protein_GI_number: 15672386 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Lactococcus lactis # 7 300 11 307 310 159 32.0 8e-39 MQTSCTAHGKVILIGEHSVVYGYDALAMPIQALHIKTTVSDYAGQVWMDTKLYQGPFFDA PADYNGLKYVVKELLTRSGKNPQIKLTYTGEIPMERGLGSSATVAYGTTVALSQYLGLKL SASEVMDITNQAETINHGKASGLDAATVNSDYLVFFNKQKGVKKLSSKLGASLLIMDTGD LGNTREAVTMVAKLLNESPDAQVRMRKLGQLADEVKAAWLEQDPESVGKFFNEAQELLAS FNLSTSKINRICQIADKGGALGCKLSGGGLGGIVIALCKDAASCEEIAQACQAEISNYWI EEI >gi|300496571|gb|AEAT01000083.1| GENE 28 38011 - 38970 962 319 aa, chain + ## HITS:1 COG:SA0548 KEGG:ns NR:ns ## COG: SA0548 COG3407 # Protein_GI_number: 15926269 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Staphylococcus aureus N315 # 2 309 4 316 327 246 45.0 4e-65 MSKTARAHTNIALIKYWGKKDAKLRLPLMSSLSMTLDAFYSDTKISDSEQMSFKLNGQAV SGPAADRVFAYLRAMQDRFGVKGNLAVESVNQVPTAAGLASSSSAFAAMAAAFADHYQLG VDRQELSRMARMGSGSASRSVFGGFSVWQKGDSDQTSYAYPLDEEPDMDLRLLAVEINDQ EKKISSTKGMKMSKSSPFYQVWLDRNDSEIKEMEEAIKQADFSKLGSLAELNASEMHALT FTAVPGFTYFEPNTIKAIKLVQDLRQQGLECYYTIDAGPNVKVLCQEQNSKDIINCFESS FDRVKIIEAGFGPAVTLLD >gi|300496571|gb|AEAT01000083.1| GENE 29 39048 - 40130 1414 360 aa, chain + ## HITS:1 COG:SA0549 KEGG:ns NR:ns ## COG: SA0549 COG1577 # Protein_GI_number: 15926270 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 1 357 1 358 358 286 41.0 3e-77 MITEKAPGKLYIAGEYAVLEQDCPAILVALDQYVRVSIKPSSSDTGLIHSKQYSQDSIHW VRRGSKIVIDNRDNPFEYILSAISFTERYCLEQKVKMDVYDLFVNSDLDSADGKKYGLGS SAAVTVATVKAILRFYGVQASKDLIYKLSTISHYSVQGNGSAGDIAASVYGGWIAYQTFN KLWLKEELASKSLSAVVGEAWPGLKIQQLVPPKGMELLIGWSQQPASTSRLVDKTNANKN NLRTEYAKFLADSRKCVLQMIRGFEEANIALIQKQIGINRRLLQHFAAINNIAIEIPRLT ELIEIANKFGGAAKTSGAGNGDCGIVIVNKDTDIDRLRKEWVKNNILPLEFHIHQSELTY >gi|300496571|gb|AEAT01000083.1| GENE 30 40141 - 41166 1094 341 aa, chain + ## HITS:1 COG:lin1420 KEGG:ns NR:ns ## COG: lin1420 COG1304 # Protein_GI_number: 16800488 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Listeria innocua # 4 310 9 320 358 212 40.0 7e-55 MSQRSIRKEEHLALTQMFFNAQKTNSFDQVHLLRPALPESQVNLNAVKTTWFGKELAAPF FINAMTGGSEKSRQINRQLGEIANKQQIALALGSASILTKEEDQLESFYVAREANPDGLL FANVNPLTPAKAAAKIVKDLQADALQIHLNVAQEIPMPEGDRDFVWLDRMLEIKEAAGVP VIVKEVGSGLDPVSLQKLQAAGFSWFDIGGAGGTNFAQIENSRNPHPMAYLNDCGLPTAL AALLAAPLTKQLIVSGGVRNPLDVFKGLALGGKFVGVANHFLHTLLNEGLDGLDEEIGRW KEELTYLFALYGQGCLPVKQPYYLDLELKNQFDQLKQYAGK >gi|300496571|gb|AEAT01000083.1| GENE 31 41372 - 42307 1458 311 aa, chain - ## HITS:1 COG:BS_yybQ KEGG:ns NR:ns ## COG: BS_yybQ COG1227 # Protein_GI_number: 16081107 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Bacillus subtilis # 1 308 1 306 309 316 56.0 4e-86 MEKELIFGHRNPDTDAIGTAIAYSYFQNQHGYNTEAVALGEANDETSFALKKFGFEAPRV VKTVANEVKAIMLVDHNEPQQSVEDRDQVKVTHVIDHHRISNFATIDPLFYRAEPVGCTS TVLWEMFKEQNMEIPTNIAGIMLSAIISDTLLLKSPTTTDIDKEAVEDLAKIAGVDYKEY GLELLKAGTNIAAKSVEELIDLDAKSFELGSKTARIAQVNVVDVPEALERKDAFLAAMEK DAKANGYDLFMLVITNVLDSDSEVLFIGDDESKSVFAKAFGKELVDSEAHLPGVVSRKKQ IVPPLTRAFEA >gi|300496571|gb|AEAT01000083.1| GENE 32 42422 - 44905 3758 827 aa, chain - ## HITS:1 COG:BS_grlA KEGG:ns NR:ns ## COG: BS_grlA COG0188 # Protein_GI_number: 16078871 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Bacillus subtilis # 6 806 5 795 806 829 54.0 0 MPETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTAD KPFKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAM RYTESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYAT EIPPHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVMGKKGLRDAYKTGKGRI QVRAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGL SIVIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQVGLKRILAAYLEHEEEV VTKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAEFAFTDRQA EAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKILADPKVLQKEIIKELQAVKKEFGS DRRSEISDETARVEVDEKALITEESVRVLISRDGYIKRSSMRSFQSTEAGDNGLPETDRV VYEGSLSTLTNLYLFTNHGNLIYRPVHELVESKWKDVGQHLSQELGLAADESIIRVFALE ALDDPNLAFLLATNDGFIKQVALADLQPTRTYKSRAIMAMKMKGEDSRVITVDLVKTSEK REITLFTNQAFALKYDIGEVPQVGARAAGVKSINLKEDDYVVACLVTDPQYEDLLKVGLV TQRGAFKQMPLKLIGKTSRAKRGVLVLRNLKTKPHRIVALKAYGQNHELILITSSLRKQV IRTSDHPVGDRQSNGSFVIDVKTDGEAKELLMGRPLPDHARDVGRLL >gi|300496571|gb|AEAT01000083.1| GENE 33 44920 - 46851 2819 643 aa, chain - ## HITS:1 COG:lin1325 KEGG:ns NR:ns ## COG: lin1325 COG0187 # Protein_GI_number: 16800393 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Listeria innocua # 1 642 1 646 655 845 66.0 0 MPKNTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGQEIN VTIHEDNSVTVQDFGRGMPTGMHASGRPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGSS VVNALSSYMKVHVVRDGKAYEEEFQNGGHPIGTLRCLGATKEKTGTTITFKPDPIIFSTT KYNYETIQERIRESAFLLKGVKFTLTDERTPKHHDVFQYDDGIESFVSYLNEGKGTIGKV FCFEGSQDGMEIEFAGQYSDSYSENFVSFVNNVRTADGGSHEVGARSGFTRAFNDYAKKQ GLLGKKDKNLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSIVYEKLS YYLLENGEWAQDLVKKALRARDAREAAKKARDESRNGKKRHKKEVLSGKLTPAQSRNPKK NELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQRAKLADIFKNEEINTMIHTIGAG VGTEFKVEDSNYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMIEAGKVYIALPPLYRIS KKQTNLYAWTDEERDEDEKKVGKGYALQRFKGLGEMNADQLWETTMNPESRMLIRVRIDD AQLAERRVTTLMGDQASARRKWIEENVKFRLGEEESILDKVND >gi|300496571|gb|AEAT01000083.1| GENE 34 46926 - 47588 779 220 aa, chain + ## HITS:1 COG:lin1323 KEGG:ns NR:ns ## COG: lin1323 COG0344 # Protein_GI_number: 16800391 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 11 199 3 192 198 158 48.0 6e-39 MINGVDLMFAMKFALLLILAYLIGSFPTGVLVGKLFYHKDIRDYGSHNIGTTNTFRVLGP KAGTLVFLVDFFKGTLATCLPRIFHLGGHHLCLIFGAAAIFGHAFSIFLKFKGGKAVATT AGFLLGYNVQFFGLCACFFIPLLLITSMVSLSSLISVVLIFISSFFFHDTFLTVMSGVLV VLIWWSHRANIKRIIAGNENLVSFGLYYHIKQKQDKDKKE >gi|300496571|gb|AEAT01000083.1| GENE 35 47698 - 47991 259 97 aa, chain - ## HITS:1 COG:CAC3281 KEGG:ns NR:ns ## COG: CAC3281 COG1132 # Protein_GI_number: 15896526 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Clostridium acetobutylicum # 1 92 606 697 706 130 71.0 5e-31 MTIARAFLADPEILILDEATSSVDTRTESLIQKAMADLKQERTSFVIAHRLSTIQDADKI IVINHGQIVESGNHQSLLAKDGFYADLYQSRFLGQEI >gi|300496571|gb|AEAT01000083.1| GENE 36 48001 - 48690 841 229 aa, chain - ## HITS:1 COG:L61680 KEGG:ns NR:ns ## COG: L61680 COG1132 # Protein_GI_number: 15672245 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Lactococcus lactis # 1 229 48 296 394 236 50.0 3e-62 MIFPLMNFVKNVGYFLIAVFGVIDVINGAISLGNVQAFLQYSNQFSQPLTQLANMSSTIQ QTIASAERIFAVLDAEDMDETVHPAEGLKTDTKLTFKDVSFSYTDAPLIENFSLEVPKGE MVAIVGPTGAGKTTIINLLERFYDVKGGQIYLDGQETRSMSREDLRSHIAMVLQDTWLFT GTIFANIKYGREDAGDEEVYQAARDSFILQLPDGYETLLNEEGTNISQG >gi|300496571|gb|AEAT01000083.1| GENE 37 49569 - 50429 418 286 aa, chain - ## HITS:1 COG:HP1172 KEGG:ns NR:ns ## COG: HP1172 COG0834 # Protein_GI_number: 15645786 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Helicobacter pylori 26695 # 39 285 27 276 277 231 49.0 8e-61 MKKKNIFNIIMGIVALIVVVSAAYFGFTQPNLNSGTAGSRWSNENGVSEIKRRGYIRVAV FGDLPPYGWVNDQGKRVGYDVYLARRIAKDLNVKIRFIQVNANNRVDTLNSNKADIVLAN FTVTPERKDVVDFAKPYMKVSVGVISPKNAPINSAQELKGKKLIVTKGTTAENYFAKQSG VNLLKFDSKTQQFNALKNGRGAALADDNSYLYAWVKKNPKYVVGIKSIGPRQYVAPAVKK GNRSLLKWTNHEITKLTKEGFFVQDYQKELAPYFGKDIKPTDIVLR >gi|300496571|gb|AEAT01000083.1| GENE 38 50441 - 51181 436 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 5 244 1 242 245 172 37 4e-42 MTEEILKVEHLDKFYDDRQVLHDINFSLKKGEVLTLLGPSGSGKSTLLRTLNGLEDYKKG AIYFHGKKINPSPKEWQMLRQKIGMVFQSYDLFPNLTVIENVLLAPVKVQKRNENEVKEE AIKLLKQVRLDQYLNAYPRELSGGQKQRVAIVRALAMRPEVMLLDEITASLDPEMVRGIE EIVERLSKRDHMTMIIVTHQMNFASRIADEVLFLENGHILEDTPGKDFFDYPQTQRAKEF LDSMDY >gi|300496571|gb|AEAT01000083.1| GENE 39 51191 - 51865 363 224 aa, chain - ## HITS:1 COG:SP0710 KEGG:ns NR:ns ## COG: SP0710 COG0765 # Protein_GI_number: 15900608 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 221 1 221 225 197 47.0 2e-50 MVHSGINVLFEGSNFARLMAGLWTSIWIAAISLIIGLAIGTIFGILRTLTNKIIRFALRI YLEFFRIVPTIVLLYLVYYILPRTFHVNWPATWMAVLAFSLWVAAEFSDIVRGAIESVPK SQRESGLALGLSKIQLFRYVLLPQAVKLELPATINLATRVIKTTSLLLVISIMEVINVGQ QIIEANNQQNPTGVFWVYGLIFILYFVLDYPLSAWAKKLTKESK >gi|300496571|gb|AEAT01000083.1| GENE 40 51846 - 52205 172 119 aa, chain - ## HITS:1 COG:SP0711 KEGG:ns NR:ns ## COG: SP0711 COG0765 # Protein_GI_number: 15900609 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 119 81 199 206 112 49.0 2e-25 MAEGFTGGFNGISTSQINSGKALGMSRFQLARYVVFPQGFALSLPALTANIIFLIKETSI FSVIAIPELTNTALDLIGMYYRSNEYLLMLVIAYAIILIPVILLLTWLERRVRYGAFGN >gi|300496571|gb|AEAT01000083.1| GENE 41 52881 - 53288 415 135 aa, chain + ## HITS:1 COG:CAC0766 KEGG:ns NR:ns ## COG: CAC0766 COG0789 # Protein_GI_number: 15894053 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 4 116 1 113 126 95 46.0 2e-20 MTDLTITDVSEKYHLKPDTLRYYERIGLIPAVPRKKNGNRYYNEGLQKWIEMIVCLRHSG ITVEALVDYVKLIEQGDSTLQAREDLLKEQLALLETKKKNLNRSIKRLEHKIFLYESGEI KQGKSYFEEYKILDD >gi|300496571|gb|AEAT01000083.1| GENE 42 53281 - 53478 149 65 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_05735 NR:ns ## KEGG: LAC30SC_05735 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 10 65 3 59 121 81 71.0 1e-14 MIRSKKMKDWTKEELDVLNKITTVQNHPNDEGQSFQDSPIWVVTNNNHVYLIAGKGKESK WYKSG Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:32:03 2011 Seq name: gi|300496568|gb|AEAT01000084.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00178, whole genome shotgun sequence Length of sequence - 536 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 428 330 ## LDBND_0652 transposase Predicted protein(s) >gi|300496568|gb|AEAT01000084.1| GENE 1 3 - 428 330 141 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0652 NR:ns ## KEGG: LDBND_0652 # Name: not_defined # Def: transposase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 141 30 170 170 248 99.0 4e-65 SETVANRIRILKDMDANHPPVKTYKQCASDHGISEPTITNVVKKFVNEGLDATIKLKRSV NSDNAQRKVDGRVEAKLLEVACGPVPKGHSRWTLRLLEAQMKIILDEPISREAIRRTLKK TNFDLTAATTGASQRKKTQNS Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:32:07 2011 Seq name: gi|300496567|gb|AEAT01000085.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00132, whole genome shotgun sequence Length of sequence - 3023 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - LSU_RRNA 58 - 2902 99.0 # CR954253 [D:46947..49791] # 23S ribosomal RNA # Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:32:12 2011 Seq name: gi|300496549|gb|AEAT01000086.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00061, whole genome shotgun sequence Length of sequence - 15499 bp Number of predicted genes - 20, with homology - 19 Number of transcription units - 12, operones - 7 average op.length - 2.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) + 5S_RRNA 65 - 181 100.0 # CR954253 [D:694129..694245] # 5S ribosomal RNA # Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. 1 1 Tu 1 . + CDS 101 - 334 61 ## + Term 390 - 424 5.2 2 2 Op 1 . + CDS 457 - 819 225 ## LBUL_0048 hypothetical protein 3 2 Op 2 . + CDS 764 - 934 77 ## gi|325124888|gb|ADY84218.1| Hypothetical conserved protein + Term 1046 - 1080 5.2 + Prom 962 - 1021 2.0 4 3 Op 1 . + CDS 1112 - 1459 104 ## Ldb0057 hypothetical protein 5 3 Op 2 . + CDS 1521 - 1685 266 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Prom 1699 - 1758 5.8 6 4 Op 1 3/0.000 + CDS 1807 - 2775 1399 ## COG1482 Phosphomannose isomerase 7 4 Op 2 . + CDS 2815 - 3690 1312 ## COG1940 Transcriptional regulator/sugar kinase + Term 3717 - 3771 14.5 + Prom 3811 - 3870 6.2 8 5 Op 1 7/0.000 + CDS 3910 - 4353 282 ## COG1943 Transposase and inactivated derivatives 9 5 Op 2 5/0.000 + CDS 4376 - 5329 772 ## COG0675 Transposase and inactivated derivatives 10 5 Op 3 . + CDS 5345 - 5554 161 ## COG0675 Transposase and inactivated derivatives - Term 5255 - 5317 4.9 11 6 Tu 1 . - CDS 5516 - 6007 247 ## LBUL_0054 hypothetical protein - Prom 6124 - 6183 8.0 + Prom 6088 - 6147 5.8 12 7 Op 1 . + CDS 6326 - 7090 641 ## LDBND_0040 hypothetical protein 13 7 Op 2 . + CDS 7087 - 7869 835 ## LDBND_0041 hypothetical protein + Term 7871 - 7913 8.2 - Term 7858 - 7900 8.2 14 8 Tu 1 . - CDS 7920 - 8405 636 ## LDBND_0042 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein - Prom 8579 - 8638 5.6 - Term 8759 - 8796 6.1 15 9 Tu 1 . - CDS 8833 - 9543 934 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) - Prom 9708 - 9767 3.9 - Term 9585 - 9624 -1.0 16 10 Tu 1 . - CDS 9843 - 10481 791 ## COG1609 Transcriptional regulators - Prom 10678 - 10737 4.1 + Prom 10707 - 10766 4.4 17 11 Op 1 7/0.000 + CDS 10807 - 11250 577 ## COG0366 Glycosidases 18 11 Op 2 . + CDS 11254 - 12117 1319 ## COG0366 Glycosidases 19 12 Op 1 . + CDS 12492 - 14408 2338 ## LDBND_0050 hypothetical protein 20 12 Op 2 . + CDS 14408 - 15355 1357 ## COG0463 Glycosyltransferases involved in cell wall biogenesis Predicted protein(s) >gi|300496549|gb|AEAT01000086.1| GENE 1 101 - 334 61 77 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPNTVVKLLNAESSWWETACEDRKLPREARVRWKSGSFLLLGYLRNVLTLANKYYKVKLT IKSRVISRASEWLHTLT >gi|300496549|gb|AEAT01000086.1| GENE 2 457 - 819 225 120 aa, chain + ## HITS:1 COG:no KEGG:LBUL_0048 NR:ns ## KEGG: LBUL_0048 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 120 1 120 120 183 96.0 2e-45 MASILYDQLQSMALKQYIKQLAPEKLQQLIKNPDISEADLKLIQKNTGNETIKQLATEKL QHLNSQAIQKSLNSYRRLHDARGWAASIARGQSLNDLKYRYKNATPDEKVKIRDILHNAN >gi|300496549|gb|AEAT01000086.1| GENE 3 764 - 934 77 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|325124888|gb|ADY84218.1| ## NR: gi|325124888|gb|ADY84218.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] # 5 51 1 47 65 85 97.0 2e-15 MLPLMKKLKFGIFYIMLINLMGHSKWSWMNAYRNRYGLIRDDIHTEKKTLKIIKLN >gi|300496549|gb|AEAT01000086.1| GENE 4 1112 - 1459 104 115 aa, chain + ## HITS:1 COG:no KEGG:Ldb0057 NR:ns ## KEGG: Ldb0057 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 115 1 118 118 171 88.0 7e-42 MSSILDDQLRLMALKQYGLIKAIKTPDISKEDLTLILKNTENETIKQLAAEKLLKNPDLY KVDLELILKNTENETIKQLATEKLQYLNSHPRLGWAGSIARANRLGRFHSESTKD >gi|300496549|gb|AEAT01000086.1| GENE 5 1521 - 1685 266 54 aa, chain + ## HITS:1 COG:SPy1328 KEGG:ns NR:ns ## COG: SPy1328 COG2723 # Protein_GI_number: 15675270 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Streptococcus pyogenes M1 GAS # 11 52 424 465 466 65 59.0 3e-11 MLINLMGHSKWSWMNAYRNRYGLIRDDIHTQKKTLKKSAYWYRKLSDSNELDAD >gi|300496549|gb|AEAT01000086.1| GENE 6 1807 - 2775 1399 322 aa, chain + ## HITS:1 COG:L179409 KEGG:ns NR:ns ## COG: L179409 COG1482 # Protein_GI_number: 15672751 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Lactococcus lactis # 3 319 1 315 315 368 58.0 1e-102 MQMAEPLFLEPVFHEKIWGGTGLKDEFGYQIPSDHTGEAWAISAHPHGPATIKNDLYKGM KLNELWDQHRELFGNAKGDVFPLLTKILDANQDLSVQVHPDNEYARIHEGELGKTESWYV IKAKPGAKLYYGHNAQTREEFAEMVKNGEWKKLLRTVPVHEGDFFYVPHGMVHAVGSGIM VLETQQSSDTTYRMYDFDRVDKKTGKLRELHLQQSIDTVQVPFEMPKLNHEEWDVGDVHV TQFVMAEYFGVFKLDVHGKGDFEIKDGKYRLLSVLDGSCDLTVDGQTYPLKKGNHLILPT TISCYTLDGQATIIASKPGDEA >gi|300496549|gb|AEAT01000086.1| GENE 7 2815 - 3690 1312 291 aa, chain + ## HITS:1 COG:L117718 KEGG:ns NR:ns ## COG: L117718 COG1940 # Protein_GI_number: 15673469 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Lactococcus lactis # 1 289 1 286 291 251 48.0 1e-66 MTDTFVGSIEAGGTKFILGVQNVETGETTATKRVPTTTPAETLEACRDFFKENPVKAIGI GSFGPIDIDPKSATFGYISKTPKAGWSNTELRGYFEKELGVPAVLTTDVNASCYGEYIAR GRDNEKTYLYITIGTGVGAGAIQQGHFIGYTNHSEMGHMRIPKRADDKYEGGCPFHHDAC GEGLTAGPTIKGRTGIPGEDLDRSHPVFDLISYYVAEMLYNIYLTIRPDVMVVGGSVLNE GDMPTVRKYFAEMNNDYVALPHLDELIVRPIVANNGSATLGCFEMAKDLLK >gi|300496549|gb|AEAT01000086.1| GENE 8 3910 - 4353 282 147 aa, chain + ## HITS:1 COG:DR0667 KEGG:ns NR:ns ## COG: DR0667 COG1943 # Protein_GI_number: 15805694 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Deinococcus radiodurans # 16 144 13 139 140 125 44.0 3e-29 MTKYEFRNDEPDIIHGRGYVYNLNYHIVWCTKYHNQALANPIIVDSLKDKILQICRENEY TVKALEIMPTHVHILLSAKPKESVTNIVKKLKGITAKWLFEKYPETMKEYFWGGHVWSPS YYAGSIGVTTEAVVKKYIETQWNRPFH >gi|300496549|gb|AEAT01000086.1| GENE 9 4376 - 5329 772 317 aa, chain + ## HITS:1 COG:alr2719 KEGG:ns NR:ns ## COG: alr2719 COG0675 # Protein_GI_number: 17230211 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Nostoc sp. PCC 7120 # 15 313 6 328 452 127 31.0 2e-29 MTIRKRKSDLPEYGVKIRLYPTLVQQAKLRQFFGNDRFLWNQLVSLYQERYKNNKSLKLL TEFDLNNLLPALKNEYPFLKASDSSSFQIVTRNISDAWEAFFAGTRRKPRFHSKHNAKQS YTGKSSSIRIMGKRNMFLPKLRRVRSSKTGVIDGKIKCYTISIDACGRYWLSLIVEKKSA FLPKTGKAVGIDVGLTHLAILSDGRKFDRFSSDFCEKQAEIWQSKSSKRRHLAFVKSQQE ANKKVLGAKSLSDYRNWQKANVAKNRYMSRITNQRDDYLHKITDQLVKKYDVIVIEDLKI KNMTKNHHLARSILRQS >gi|300496549|gb|AEAT01000086.1| GENE 10 5345 - 5554 161 69 aa, chain + ## HITS:1 COG:alr1531 KEGG:ns NR:ns ## COG: alr1531 COG0675 # Protein_GI_number: 17229023 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Nostoc sp. PCC 7120 # 2 65 297 361 395 75 55.0 2e-14 MLEYKCKKYGKILIKVNPAYTSRICSKCGKDTGKKPLSVREWDCPFCKAHHDRDINASIN ILLKGLAQL >gi|300496549|gb|AEAT01000086.1| GENE 11 5516 - 6007 247 163 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0054 NR:ns ## KEGG: LBUL_0054 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 43 40 82 222 77 93.0 3e-13 MNRILPSNEILVNFTSLCLAITLNILSYTTLMFVAYKIELPLASQSGKEFIRVYRYIGTL SRMTCSPDQGRGFLYRLVLTHSLQLLRTTNLFLQAGLAEVKTAFLLVLSSKLNSSAKTEV SLFITEVPPPTIPPSRIDCCLTVRFFAYPALSELGKSFKQNID >gi|300496549|gb|AEAT01000086.1| GENE 12 6326 - 7090 641 254 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0040 NR:ns ## KEGG: LDBND_0040 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 254 1 254 254 449 92.0 1e-125 MEDVEEALKRQLAGRVWSASLRRQLENKDICLSDLLLDKQRLNVIKPADVPLISQALDEL QKNFREAVKQVLQTEIEATSDADRLAWLLLQLFAKKRKRVRDLTADQLALLQTEEAKKYV LFHGPRVYFRNNACFLTNTFPAELVHINDLAGLKGQPAAFSALLQGEEVDGEELRSWLDL FGPLYEEKYFGKHYGPGVELAGFQISSGKRDPRIYYVLRYLLKDKEPEARSKNFAALPLK TILRRNLVCHEAFK >gi|300496549|gb|AEAT01000086.1| GENE 13 7087 - 7869 835 260 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0041 NR:ns ## KEGG: LDBND_0041 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 260 1 260 260 478 100.0 1e-134 MMTVYSREYYQAGLAEGKIKAKKLDKYRLGPDFILAYDLGPAASYRTLLVDRKQGEIVLR ATTKTLLAHFVNEDLPGGYPLQDKLYKLLGIREQHVISAGHGAIFSPESFHAGLVDLVAL QRMRGMEACQGGLLMTDLAGVNCYFFQVKRGYANASRQVKEAVEHNALYCSLFHGLAGQV GCPVCRQGDWNLLYGPSYQQAVEADLAGRIPSLRQLLAEIKAEEKAVLKQILLDELGLPL LPDDLDYALKQAEKKLLFRI >gi|300496549|gb|AEAT01000086.1| GENE 14 7920 - 8405 636 161 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0042 NR:ns ## KEGG: LDBND_0042 # Name: not_defined # Def: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 161 1 161 161 271 100.0 9e-72 MNMQINQAMDQAWERRKLVAGALKTAHVYRKCADYEDLFQEGLIVYAQCLQEMADQPQEE ADKLAFRKVYWRILDLLRQKKRQRDHDEPLLAAAFVGQADQHNLLLKEAWKKLSTSEKLL LGQNILAGRSLKETADLMNIPYRTASRIKKQALEKLRRQLA >gi|300496549|gb|AEAT01000086.1| GENE 15 8833 - 9543 934 236 aa, chain - ## HITS:1 COG:TM1429 KEGG:ns NR:ns ## COG: TM1429 COG0580 # Protein_GI_number: 15644180 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Thermotoga maritima # 2 211 5 214 234 159 43.0 3e-39 MLNEFLSTGLMILFGVGVHCDDVLNKTKYHGSGHIFAITTWSFGITACLFIFGGVCMNPA MALCQAILGIIPWSSFIPYTLAEFAGAFAGALLAYFMYADHFKASKDTIDGVATRNIFST NPNLRNLPRNWMVEMIATTIFLSGILAIVANYEKFGFTPLLVGLLVWAIGMGLGGTTGFA MNQARDLGPRLAYQILPIKNKANNDWQYGLIVPGTAPFAGAVLAAMFVKYFLKLTF >gi|300496549|gb|AEAT01000086.1| GENE 16 9843 - 10481 791 212 aa, chain - ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 2 209 60 274 321 104 31.0 1e-22 MSKTILVLLPTISNPLYAEFYEAVQGNLEQLGYDSQLHVGLATAYLKLLKGDEFGGMITS LPETPLPLARKLPTVSFDRPISREIPLVSCDNYGGGCLLAQAVLKRGAKQILILCGRQQD LSPINERLRGMMDYFQKQQTSFETAYLDFTSGNLLKQVRLAKLLTGQKYDAICCSDDITA LLVKQRVRQLGYQPLLTGFDGSNFVRNFFRTC >gi|300496549|gb|AEAT01000086.1| GENE 17 10807 - 11250 577 147 aa, chain + ## HITS:1 COG:SP1894 KEGG:ns NR:ns ## COG: SP1894 COG0366 # Protein_GI_number: 15901721 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 1 147 1 179 480 176 50.0 1e-44 MKLQNKAMLITYPDSLGHDLHDLAYVMDRYFSKAIGGIHILPFFPSHGDRGFSPMTYEKV APEFGDWSDVEKLGEQYYLMFDFMINHISAHSDYYLDLIYKRKDKAPWEDLEFADGSHEK MWNTFGPDQIDLDVRTEVTKRFVKETL >gi|300496549|gb|AEAT01000086.1| GENE 18 11254 - 12117 1319 287 aa, chain + ## HITS:1 COG:SP1894 KEGG:ns NR:ns ## COG: SP1894 COG0366 # Protein_GI_number: 15901721 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 1 287 182 480 480 394 66.0 1e-109 MAKHHASLIRLDAFAYAVKKLDTSDFFVEPEIWDLLAEVRQDLAGTDAQILPEIHEHYTL PKKVSDHGYFIYDFALPMVLLYSLYTGKSQRLAAWLKQCPMKQFTTLDTHDGLGVVDAKD ILTDEEIDYTTQELYKVGANVKRKYSSAEYNNLEIYQINTTYYSTLGNDDRKYFLARLLQ IFAPGIPQIYYVGLLAGENDLDLLESSKEGRNINRHYYSLEEIAYEVDRPVVAKLLKLLE FRNSEAAFDLAGLLEVATPSEHEIVLTRVNLADLTYQITVNGQAVDL >gi|300496549|gb|AEAT01000086.1| GENE 19 12492 - 14408 2338 638 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0050 NR:ns ## KEGG: LDBND_0050 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 638 15 652 652 1202 99.0 0 MKENKKRKLEYQAYLPYAALLLLAAYFCFRQMLTGNVIIGSDTIFHYNRFYETAEQIKHG NFNWFMSMYGYSHSGRVINALYGPLFAYANGLLLLLVKTWYRYQIVSSFIVYAVGGIGMY RALRRFNSRRSVATILAMLYLTIGWMPRWQGATNFSGISAAMMPYGILVAADMIFAEKKI PWVKMGLLMAIALEVHLLTAVMYMAFLLPAWLYVLIKNKGQRQLWLETCQAVGLAVLLAL NTLAPLLWLSKTNSLAAPSTMNMMANALHLKHTYLAVAPRGLLGYNQRDGLTYWLFCIFA GQILYAVWQRQKDHLNSYITLYGAFWLFMSSRLLPWERISNRLPALARYLQFPSRFTCIA YPLLLIGIGMSAEILLKKSKHFSWLVYGLIGAALALTTSSMVRYMNADAWNGYLNNVGHN ASTNFGHEVTNPGKHKNKKTKSGLIAMTPARKEAMRQANAATHTNDLRKFLTLTKKPIAD YLPVYKFDPKPVITGWADGYKNKEYWQEQTNKAARSYDKTVLNHKVRKPIKFEILKGGKV KLTWTSKGKKKRLPVVTYAQSKLTVNGKVLTKYERSRIGAPKVASRQGKNVAYLEFVTPL WLKLLLAISLLSWPGFICLGLGIKLKGKNAEREGKKQK >gi|300496549|gb|AEAT01000086.1| GENE 20 14408 - 15355 1357 315 aa, chain + ## HITS:1 COG:SP1606 KEGG:ns NR:ns ## COG: SP1606 COG0463 # Protein_GI_number: 15901446 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 4 307 2 306 320 332 52.0 8e-91 MKKISIIVPCYNEEAALPLFYPVASEVLEKLPDDYELIFVNDGSKDRTLEILHDLAEKDP HVFYISFSRNFGKEAAMYAGFVNASGDYVAVMDADLQDPPALLPEMIKILDSGEYDSVAT RREDRKGEPPVRSWFARKFYQIINKISDADVVDGARDFRLMKRDMVDAIVEMSEYNRFSK GIFGWVGFKTYWLPYENVERVAGESKWNFWKLFKYAIDGIINFSLVPLKLSSWLGFIMTG VAFIMLVVIILRRLIHGDPVAGWASLISVIIFIGGLIMLSLGVIGQYLAKIYMESKHRPH YISSESNIKNVKKID Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:32:57 2011 Seq name: gi|300496531|gb|AEAT01000087.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00167, whole genome shotgun sequence Length of sequence - 17341 bp Number of predicted genes - 16, with homology - 16 Number of transcription units - 9, operones - 5 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 40/0.000 - CDS 29 - 253 341 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 2 1 Op 2 . - CDS 272 - 913 566 ## COG0356 F0F1-type ATP synthase, subunit a - Prom 1033 - 1092 4.2 - Term 920 - 946 -0.6 3 2 Tu 1 . - CDS 1101 - 1730 1024 ## COG0035 Uracil phosphoribosyltransferase - Prom 1759 - 1818 8.8 4 3 Op 1 10/0.000 - CDS 1830 - 2825 1445 ## COG0009 Putative translation factor (SUA5) 5 3 Op 2 32/0.000 - CDS 2825 - 3667 181 ## PROTEIN SUPPORTED gi|94499014|ref|ZP_01305552.1| ribosomal protein L3P methyltransferase 6 3 Op 3 3/0.000 - CDS 3660 - 4745 1839 ## COG0216 Protein chain release factor A 7 3 Op 4 . - CDS 4769 - 5371 663 ## COG1435 Thymidine kinase - Prom 5398 - 5457 8.0 + Prom 5360 - 5419 4.6 8 4 Tu 1 . + CDS 5512 - 6867 2143 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase + Term 6905 - 6937 5.0 - Term 6892 - 6924 5.0 9 5 Op 1 . - CDS 6929 - 7180 446 ## LDBND_0628 hypothetical protein 10 5 Op 2 . - CDS 7203 - 8207 1011 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + TRNA 8378 - 8449 60.2 # Glu CTC 0 0 + TRNA 8455 - 8527 63.7 # Gln CTG 0 0 - Term 8577 - 8622 6.3 11 6 Tu 1 . - CDS 8639 - 10240 2450 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 10295 - 10354 6.8 - Term 10355 - 10390 5.3 12 7 Op 1 . - CDS 10414 - 11754 2131 ## COG0166 Glucose-6-phosphate isomerase 13 7 Op 2 . - CDS 11831 - 12457 697 ## LDBND_0621 glycopeptide antibiotics resistance protein - Prom 12485 - 12544 6.5 + Prom 12526 - 12585 7.2 14 8 Tu 1 . + CDS 12606 - 14828 3588 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily + Term 14834 - 14887 8.1 - Term 14823 - 14871 11.5 15 9 Op 1 40/0.000 - CDS 14876 - 16441 1831 ## COG0642 Signal transduction histidine kinase 16 9 Op 2 . - CDS 16438 - 17163 1290 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 17197 - 17256 6.0 Predicted protein(s) >gi|300496531|gb|AEAT01000087.1| GENE 1 29 - 253 341 74 aa, chain - ## HITS:1 COG:SA1910 KEGG:ns NR:ns ## COG: SA1910 COG0636 # Protein_GI_number: 15927682 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Staphylococcus aureus N315 # 8 70 4 66 70 58 55.0 4e-09 MTTGLKDLAAALVAGIAALAASWGNGKVISKTIESIARQPESAGNLRSTMFIGVGLIEAV PILAIVIAFLILFL >gi|300496531|gb|AEAT01000087.1| GENE 2 272 - 913 566 213 aa, chain - ## HITS:1 COG:lin2679 KEGG:ns NR:ns ## COG: lin2679 COG0356 # Protein_GI_number: 16801740 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Listeria innocua # 3 213 28 237 238 167 44.0 1e-41 MAIVVFAICYALSRKVEMKPNKKQNVLEYLIDFTDGIVKDNVEDPAAQKHLSLYAFVLFL FIFCMNQLGLFLEVKVGDYMVIKSPTADPVTTMSFAMMTLLLSFTFGIQKFGTKGYLQNY ARPVGFLLPINIIEEFTNFLTLSLRLYGNIFAGEVLLTLIGNQLGPSMGIVTRILAAPLA MIWQGFSVFIGSIQAYVFVTLSMVYIGKKVTQE >gi|300496531|gb|AEAT01000087.1| GENE 3 1101 - 1730 1024 209 aa, chain - ## HITS:1 COG:SP0745 KEGG:ns NR:ns ## COG: SP0745 COG0035 # Protein_GI_number: 15900640 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 209 288 67.0 3e-78 MGKFTVLNHPLIQHKLTIIRRKETGSNEFRRIVGEIAGLMTYEITRDLPLQDVEIETPMG KTVQKELAGKKLTIVPILRAGMGMVNGVLEMIPSAKVGVVGMYRDEETLKPVEYFFKVPK DVTERECLVVDPMLATGGSANLAIEALKKRGVTDIKLAVLVAAPEGVKAVQDEHPDVDIY AAALDDKLLPNGYIFPGLGDAGDRIFGTK >gi|300496531|gb|AEAT01000087.1| GENE 4 1830 - 2825 1445 331 aa, chain - ## HITS:1 COG:lin2685 KEGG:ns NR:ns ## COG: lin2685 COG0009 # Protein_GI_number: 16801746 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Listeria innocua # 13 331 20 343 345 263 45.0 4e-70 METKIFKREQLDEAVSLLREGELVAFPTETVYGLGALATRDDSVKKVYAAKGRPSDNPLI VTVADEAMMRPYAKEVPERAEKLIKHFWPGPLTILLLAKEGALPESATGGLPTVAFRCPD DQLTHDLIAKLGYPIVGPSANTSTKPSPTTAQHVYHDLKGKIAGIVDGGETEVGLESTIV DLSVNPAVVLRPGKITPEEISQVLGEEVLINRGQVSDKDVPKAPGMKYRHYAPSAQVYVV DQAETFAKLDLDVSCGVMATSDLLENLPVPEENKFNLGKNLTEADHNLFAGLRYFDDRPE IKSIYVEGFDQGEESLAYMNRLNKAAGGHHV >gi|300496531|gb|AEAT01000087.1| GENE 5 2825 - 3667 181 280 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|94499014|ref|ZP_01305552.1| ribosomal protein L3P methyltransferase [Oceanobacter sp. RED65] # 47 243 67 263 305 74 28 5e-13 MHKSLREMRIEASELAESARSEEIDFLLAERLGLTPSQFQLKQDMELSDAEVKQARKDMK RLAKGDSPQYILGYAWFLGYRLRVAKGVLIPRFETEELVEWALAHLQDGDTVLDLGTGSG NITVALAKEAESKGIKDLHFYASDVKDTPLRISEENFLDYGLDVTTRKANVLLGLGKFDL IISNPPYIKPSEKNVMDKGVLANEPEEALFGGQDGLAFYRKFAEEVRDHLNSGGRFFMEF GFSEEDELKALFAEKLPDFKVEFRRDMAGKPRMLFGEWKK >gi|300496531|gb|AEAT01000087.1| GENE 6 3660 - 4745 1839 361 aa, chain - ## HITS:1 COG:L0373 KEGG:ns NR:ns ## COG: L0373 COG0216 # Protein_GI_number: 15672577 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Lactococcus lactis # 7 357 4 355 357 402 60.0 1e-112 MDNVMVQLESLEVRYEEIQEMMADPEVIADTKRYMEITKEEADMREVVQKFRKFKADKEE IAGNKEIIADGSDPELVEMAKMENSELEDEISQLEDEIKILMLPKDPNDDKDIIMEIRGA AGGDEASLFAGDLLRMYEKYAENQGWNVSIVDSEQTEVGGYKRVAIMITGNKVYSKLKYE NGAHRVQRIPVTESAGRVHTSTATVAVMPEYEQVDIDLDPKEIRVDVYRSSGAGGQHINK TSSAVRMTHLPTGIVVAMQDQRSQQQNRAKAMEILKSRVYDYYESQNRDKYDAKRKNAVG TGDRSERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELDEVIDALTVYYQTKQLEELAEN A >gi|300496531|gb|AEAT01000087.1| GENE 7 4769 - 5371 663 200 aa, chain - ## HITS:1 COG:SPy1140 KEGG:ns NR:ns ## COG: SPy1140 COG1435 # Protein_GI_number: 15675117 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Streptococcus pyogenes M1 GAS # 1 196 1 188 189 254 61.0 5e-68 MAQFFFEYGAMGSGKTIEILKVAHNYEIQGRKVALLTSSVDTRSGRGMVASRIGLSRSAQ PIEPDLDLFDYITALNQQEQESDGHPLAAVLIDEAQFLKKDQVIQCARVVDDLHIPVMAF GLKNDFQNHLFEGSEYLLLYADKIEEMKTICHFCGHKATMALRYKDGLPVYEGEQVQIGG DEAYYPVCRFHYFHPDQARD >gi|300496531|gb|AEAT01000087.1| GENE 8 5512 - 6867 2143 451 aa, chain + ## HITS:1 COG:L114717 KEGG:ns NR:ns ## COG: L114717 COG0769 # Protein_GI_number: 15673088 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 1 450 1 448 449 454 47.0 1e-127 MSFKSNIATFAGKSSYWFLHNVLKGGTSFPGKLAMKLDPDVLEQLGKDYETIIVTGTNGK TMTTALITQTLKEKYGDILTNPSGSNMAQGIVTAFLAHGQKKSSRKLAVLEVDEANVKAV TQLVHPKAFVLTNIFRDQMDRYGEIYTTYEKIVAGIKLAPDATIIANGDASIFSSVDLPN PKVFFGFETDQDKPQNDLKADVNTDGVLCPKCEHILHYHAISYANLGDFFCPNCGYKRPD LTYKLEEISEQTPSRIKFTIEGKEFAINIGGTYNIYNALAAFACAREFGVSANEIAAAFA KNKRIFGRQELIHYQGKQINIILVKNPVGLNEVLSLLDTEKDHYSLAALLNAHHADGIDT SWIWDGNFESLDRDKIDQVIVGGERHKDMAFRLEVAGFDPDKMIIESDFDQLLAAFAKAP TDKIYILSTYTAMLHLRQVFADKGVLKRRIN >gi|300496531|gb|AEAT01000087.1| GENE 9 6929 - 7180 446 83 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0628 NR:ns ## KEGG: LDBND_0628 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 83 1 83 83 113 100.0 3e-24 MKLSNKQKGWLLLAVYGLVIIILGRFNSRMSPYYAITAITAFAVALIEGLLFAFSKNATY KAVAFFAGLVALINVVAVLTTAI >gi|300496531|gb|AEAT01000087.1| GENE 10 7203 - 8207 1011 334 aa, chain - ## HITS:1 COG:L114054 KEGG:ns NR:ns ## COG: L114054 COG1680 # Protein_GI_number: 15674027 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Lactococcus lactis # 10 326 10 308 328 204 37.0 1e-52 MLNFPKTQLLIESLVSERIVPGVNYALLKGDQVFASTLGFASIYPAKSQLSPFAYYDLAS CSKVLATTAAFLQLREEGKVDFADPLQKYVPEFKDGRVRLSHLLTHTSGIRGWIENRNAL SGPELMRAIVGLPVTSEFNRVVRYADTNFVLLGLVLERITGKAVQDLASERIFQPAGLTE TTFAPPKEECVPTELVDGQVIQGFVHDPKGQQLGRRCGSAGLFSTVSDLVKMGQGYMGVS DLLPLKKETIQDLYQVKTPAGLKARSWGWNLVFDPKENYPIIYHTGFTGTLVLFDQVKQS GLILLTNRVHPSRHNQIFLTMRSRIINAFLQENR >gi|300496531|gb|AEAT01000087.1| GENE 11 8639 - 10240 2450 533 aa, chain - ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 4 531 3 548 549 310 37.0 3e-84 MSLRKIALTGLALAALTLTACSKQESSQKEQDLNWSVGGEITTMDPSKATDVVSFSQMIN SMEGLYRNSKSGQSPGLATSAQVSKDGLTYTFNLRKSKWNDGTPVTAQDFVYSWRRTVNP KTEAEYSYLFSGFKNADAIQNGKKPVSSLGIKAEGKYKLVVTLEKRMAYFKDLMAFPVFF PQEEKAVKKYGDKYGTASKYMAYNGPFVQKGWTGSNLSWKLVKNPDYWDKQSVKLDQISF TVNKTATTAYNLYQSNKIDALGLDSNLTKQFKGKKNYYSLSNGGTYYLELNEKNPNLANS NIRKAISLAINRENLIRILGGNNQVANTYTAKGLTEYDGEDYTSMISSSAKDLYNYQPSK AKEYWQKGLSELGKSSLTLNLLTSDSDGGKKTGEALQSMLETQLPGLKLTVTSVPFKTRL ARRENGQFQICGSDWIADFADPISFLELLTSKNSSNYGSWKNSQYDKLIAASKNTNDQEK RLKDMSEAESILLDDAGVIPLYYEDDAWLIRSNAKGWICKRSEWNFKEAYVTK >gi|300496531|gb|AEAT01000087.1| GENE 12 10414 - 11754 2131 446 aa, chain - ## HITS:1 COG:L0012 KEGG:ns NR:ns ## COG: L0012 COG0166 # Protein_GI_number: 15674150 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Lactococcus lactis # 5 446 4 448 448 588 64.0 1e-168 MNSVVSFDSSKLTPFVHENELKEMQAMVNAADKELREGTGAGNDFRGWLDLPVDYDKDEF ARIKKAAKKIQSDSDVLIGIGIGGSYLGAQAAIEFLNSSFYMAEKSDYPKVVFCGNSLSG TYLSDLINWLGDKDFSLNIISKSGTTTEPSVAFRVLKAKLIEKYGKEEAAKRIYATTDRQ KGALKTEADAEGYEEFVVPDDVGGRFSVLSAVGLLPIAAAGCDIDALMQGAADARAAYTD PDVSKDSPYQYAALRNILYRKGYTTELLENYEPSIRMFGEWWKQLMGESEGKDQKGIYPS SANFTTDLHSLGQYIQEGRRNLMETVVRVASPRADVEIPNDESNLDQLNFLAGKNMNYVN DRAYEGVVLAHTDGGVPVMTVNIADQSEHTLGYLIYWFELSVAISGYLNGINPFNQPGVE AYKRNMFGLLNKPGYEDLHDELASRL >gi|300496531|gb|AEAT01000087.1| GENE 13 11831 - 12457 697 208 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0621 NR:ns ## KEGG: LDBND_0621 # Name: not_defined # Def: glycopeptide antibiotics resistance protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 208 6 213 213 342 99.0 5e-93 MLFLAPLYNYLASQYATRINHFALIKLALQGLDKTIFYFLLFALVRVIWLLAVRKRRGLW SEFGLWLFAFYFLLVLMLTTFRSSYFPWELNFHWTRPLSNINLVFMKNTWKLVYAQSKVD FYYNSMGNILAFMPFGALLPNLLQVKRCFGRVFFLGVLSSVTIEILQFLLMTGVSDIDDV FFNACGVLLGYGLYFLLGQICVKNPNKD >gi|300496531|gb|AEAT01000087.1| GENE 14 12606 - 14828 3588 740 aa, chain + ## HITS:1 COG:SPy0807 KEGG:ns NR:ns ## COG: SPy0807 COG1368 # Protein_GI_number: 15674849 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Streptococcus pyogenes M1 GAS # 8 687 23 708 736 536 44.0 1e-152 MKHSKFLGKFQSRTGFLTLLVICYWLKYLFVAYCDLNLGLANPLQHIIMWFSPLGMSIIL ISLGFYFSKPLASYIAMLALDFANTALLFANVLYYRQFTDFITVKTMANLSKVSQGLGKS SAALLAPSDIFIWLDLIVIVILLAVKVIKIDQRSYGFSRTFAITSFGFFVLGLNMMVAEC NRPRLLKNTFDRTYVVKYLGIDTFTVYDAIKNESSSTVTKNASTSELNKIINFTQQNYAP ANSEYFGAEKGKNVIIIHLESFQQFLIGMKVNGKEVTPFLNSLYKNKHTLSYSNFYHQVG LGRTSDAENMLETSTYGISDGSLFTSLGSSNTFQAAPQILRANSNYTSAVFHGNVGSFWN RNDVYKNMGYNYFFDKNYFSQESGDSSGYGLKDKLFFAESVKYLERMQQPFYAKFITVTN HTPFELATADQDPNFKTSSTSDVTINNYFLTAHYLDQALKEFFTYLKKSGLYEKSMIVIY GDHYGLSNEEYTTLAPLIGKDPNDWSSYNTAQMQKVPFMIHASNLKGGIKSTLAGEIDVL PTILHLLGISSKQYVQFGTDMLSAKHKQIVVFRNGTVISPKYVLIGGKTSKGNVYDASGK LLTKLTKKQKAEVKKLAAYGKNSLAYSDTLNNKNLLRYYTPKGFSPVIPSDYNYSTNYQQ MMDLLEQLGKQSTALISQKGDTSKLYKTDASQLAKRQSEITQIPESVLSSSSSMNESMTS SSSSSNASSSSSKASSKKTK >gi|300496531|gb|AEAT01000087.1| GENE 15 14876 - 16441 1831 521 aa, chain - ## HITS:1 COG:lin1543 KEGG:ns NR:ns ## COG: lin1543 COG0642 # Protein_GI_number: 16800611 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 2 507 7 479 479 282 35.0 1e-75 MKLIYQHILSFLIVILTSVMIIGFSTINYQKEQAYQSNYTRLESYAENLSTLQLYSKKTQ SKNSPPVFSADFLQKFSFVMRDENLKLFLMDKNFKTTYPLGGYDILKKSAKSMLKKGQVV RIKDDHSSEQQDLAPKVQGRVKRDGLRKRSNRLFAAESYTWVVVPQVQGSGSNKKVVGAI MIGSRVKDVLQTVSQAKANLARALVITFAVSLILSFILAYYQTGRIKKLSLAARKVADGD LDVQVDHRHADEIDDLAENFNEMVRSLKASNEEVKAQEERRDQFMQDVAHEMRTPLTTIN GLLEGMKYDAIPEESIPESIDLMSRETKRLIRLVNENLDYEKIRSGKIQMMKSQFNARTI MNDVQQQLTQNAAKNGNKIILDAPEDLPVYADQDRFKQMLVNLTQNAIQFTNNGTITLRG RRFQHGATFSVQDTGIGMTQEQSKYIFERFYKADPARARYGGTGESGLGLSIVLSLVRQH GGEIKVISKPHEGSTFMITLFDQGHEKHYDKKDKKESKNKE >gi|300496531|gb|AEAT01000087.1| GENE 16 16438 - 17163 1290 241 aa, chain - ## HITS:1 COG:lin1542 KEGG:ns NR:ns ## COG: lin1542 COG0745 # Protein_GI_number: 16800610 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 238 1 228 228 240 52.0 2e-63 MKILMVEDDKSVSQMMELFFKKEGWEQVSAYDGEEAVEIFQTHPRDFDIITLDLNLPKKD GIQVAKEIRRISETVPIIMLTARDSESDQVLGLGVGADDYVTKPFSPIALIARIKALHRR VMLEGQPRNLPKNIPSNDFDLETNHIRISKSRREVYFDENRVEGLTPKEFDLLYTMAQKP KQVFSREQLLELVWGYEYFGEERTVDAHIKKLRQKLEKSGPQIIQTVWGVGYKFDDSQVN A Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:33:08 2011 Seq name: gi|300496515|gb|AEAT01000088.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00127, whole genome shotgun sequence Length of sequence - 15706 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 10, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 179 204 ## Ldb2091 hypothetical protein - Prom 203 - 262 8.1 2 1 Op 2 . - CDS 276 - 776 942 ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 3 1 Op 3 . - CDS 776 - 1558 981 ## COG2365 Protein tyrosine/serine phosphatase - Prom 1600 - 1659 5.3 - Term 1627 - 1664 6.0 4 2 Tu 1 . - CDS 1671 - 3068 164 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 3089 - 3148 3.7 5 3 Tu 1 . - CDS 3229 - 3597 59 ## Ldb2095 hypothetical protein - Prom 3712 - 3771 3.6 6 4 Tu 1 . - CDS 4942 - 5235 72 ## Ldb2095 hypothetical protein - Prom 5280 - 5339 5.0 - Term 5888 - 5918 1.2 7 5 Tu 1 . - CDS 5973 - 7463 526 ## COG3666 Transposase and inactivated derivatives - Prom 7493 - 7552 4.3 - Term 7524 - 7566 9.5 8 6 Op 1 . - CDS 7632 - 8390 900 ## COG2365 Protein tyrosine/serine phosphatase 9 6 Op 2 . - CDS 8424 - 9932 1989 ## COG0554 Glycerol kinase - Prom 10002 - 10061 3.9 + Prom 10042 - 10101 7.8 10 7 Tu 1 . + CDS 10129 - 10797 1231 ## COG3442 Predicted glutamine amidotransferase + Term 10809 - 10845 4.0 + Prom 10843 - 10902 7.2 11 8 Op 1 . + CDS 10923 - 11159 389 ## Ldb2101 hypothetical protein 12 8 Op 2 . + CDS 11283 - 13373 1439 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 13403 - 13448 13.2 + Prom 13409 - 13468 5.5 13 9 Tu 1 . + CDS 13715 - 14326 464 ## COG2199 FOG: GGDEF domain + Term 14493 - 14544 10.9 - Term 14361 - 14398 -0.8 14 10 Tu 1 . - CDS 14423 - 15271 1185 ## COG1114 Branched-chain amino acid permeases - Prom 15291 - 15350 3.4 Predicted protein(s) >gi|300496515|gb|AEAT01000088.1| GENE 1 2 - 179 204 59 aa, chain - ## HITS:1 COG:no KEGG:Ldb2091 NR:ns ## KEGG: Ldb2091 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 59 1 59 79 82 96.0 8e-15 MLRKYYVTIVFTLLALLNLLSSWGTLQYRLIMLALNLVCGFGMEYLVNKKAPAEKYNLW >gi|300496515|gb|AEAT01000088.1| GENE 2 276 - 776 942 166 aa, chain - ## HITS:1 COG:PA3693 KEGG:ns NR:ns ## COG: PA3693 COG2110 # Protein_GI_number: 15598889 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Pseudomonas aeruginosa # 3 166 4 167 173 176 57.0 2e-44 MNLEIWQGDITTLKVDAIVNAANRELRGGGGVDGAIHRAAGPELNEACRALGSCETGEAK ITPGFNLPAKYIIHTVGPVYSGSHSDPLLLAACYRNSLRVAKENGLHSVAFSAISTGVYG YPLDAASKVAFGEVRKWLREHKDYEMRVIMVAYDARTYALYQKLLG >gi|300496515|gb|AEAT01000088.1| GENE 3 776 - 1558 981 260 aa, chain - ## HITS:1 COG:YPO3785 KEGG:ns NR:ns ## COG: YPO3785 COG2365 # Protein_GI_number: 16123919 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Yersinia pestis # 6 255 11 276 276 107 30.0 3e-23 MEMQRVIELDMPVNFRDLGGYQGLDGRRVKWRKIYRSAALNEMSARDRVKLANLRITVDC DLRSSREQRDYPDLLWPGVRFVNIGLYAEGDRFNQAHPFLRLFHHLPEFDDYLPKIYQQV LLNEHSEEGIKRVFEELLKLPEDQALVYHCAAGKDRTGIISILILMALGVDDKTIAEDYL LTDELYDFSIEKQHPTNEKLSQVIAKMNVTRGEGPAVKGITETIRQGWGSFDKFFTRKLG FKQADLEKFRKMYLEEEEED >gi|300496515|gb|AEAT01000088.1| GENE 4 1671 - 3068 164 465 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 273 465 15 214 245 67 29 5e-11 MGGYVLISFAEYLYIVQVQEYVHQLRRKTVDYYYQNSETVAEMQNHLTNDFQMLFDNFTQ PLFVFFDSALAVVFSAYALITMHWILLVTTVLLSVMFLYLPSIFSKKYQERTLNFSNMNT AYLTSIKNWLGGLAEIQRYDARHKLVEVLEKRSKKLEGSLVTRQVSAIEINFINGFMSIF CQVVLDLVTGALIFAGAISIGKLVAVGQFSSTIFNSLVTLSNYLEQIKSTKPLNEKVAAA LADPPKDVNTDKELASFDHLQTTGLSFSYDHGETINYPDLKIKAGEKVLLTGDSGTGKST LLKVLAGELKATTGNIAFYDHNDRKIDISLKAMHYVPQDPVLFPASIADNITMFKLELND KVGEYLQKVDLAKDIAKFPKGQDTVIDVEKLNVSGGQRQKIVLARAELNQSDFILIDEAT AAVDQDSTKRILKNLLKTNATIIFIGHNFTNEMVDMFDRQIFLSK >gi|300496515|gb|AEAT01000088.1| GENE 5 3229 - 3597 59 122 aa, chain - ## HITS:1 COG:no KEGG:Ldb2095 NR:ns ## KEGG: Ldb2095 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 119 613 731 731 233 94.0 1e-60 MLIVLMNAKVIYQTKVYDRRIKQLANELSRMAYAKNGTFIEGLSGITWSLIKYVKQSHDR DYMPLIERQLSFYQYFCIDCHGLTYLIDSRNEALDTSLFYGNRGMAFVLKEWEKLNENRR TC >gi|300496515|gb|AEAT01000088.1| GENE 6 4942 - 5235 72 97 aa, chain - ## HITS:1 COG:no KEGG:Ldb2095 NR:ns ## KEGG: Ldb2095 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 96 106 201 731 176 89.0 2e-43 MTGKYITVYPETESRFKELIRTIYDLVGEEDGIPIFTDQVFRDSKNIYYRYGIINSDDDF IRDEQSNKLYRDHELRPYQLPSFVKEPFESKNEYKLV >gi|300496515|gb|AEAT01000088.1| GENE 7 5973 - 7463 526 496 aa, chain - ## HITS:1 COG:BH0682 KEGG:ns NR:ns ## COG: BH0682 COG3666 # Protein_GI_number: 15613245 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 1 495 1 496 522 348 41.0 2e-95 MYKYYNTDRSQLTIRLESVVPQNHLVHLIDSFVDTIPLDDLLKNLANTGRPAYHPALLLK ILLFAYSGRTFSGRKIELMLQESLPMMWLARNERISYHTINNFRSSDEANMLVKRAFLYF TQMLIDENLIRENALFIDGTKLEEDANKYSFVWRKAVEKYHDKLKNHALELYDELVKENV TQTIEREQAQEAAGLEEIAKSTEAKIEKLTEEIDSENLDKTEKSARKQLRRKLKKIARKL HKDYIPRAYKYEQSEKIFQGRNSYSKTDHDATFMLMKEDHMRNGQLKPGYNIQAATSNQY VIDYAIFPNPTDTRTLVPFLSQMALLSHFENIVADTGYGSEYNYITLEDQFKKKYYIQYS TYRIEKTRKYKKDPTKVANWHYDEADDFYIDPQGVRFRFKGYSSKVDRYGYKRDFKIYEA DPIQETDELEEASKTPKGYQRRITYNPTWENVKAHAKEYLESEDGKRIYSYRKIDVEPIF GHLKNVFEFTSAEGRK >gi|300496515|gb|AEAT01000088.1| GENE 8 7632 - 8390 900 252 aa, chain - ## HITS:1 COG:YPO3785 KEGG:ns NR:ns ## COG: YPO3785 COG2365 # Protein_GI_number: 16123919 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Yersinia pestis # 5 252 11 276 276 94 27.0 1e-19 MPKRIVKLEAGYNCRDLGGYVSHDGRTVKWGRLYRSGSLSHLTKADQAELARRKIVVDCD LRSRHEQDNFPDKLWPGAKLVDAHFYSESGDEEEEAEAAWEKYSGKLPKLSYLAMVYQQN LVAPRTGLVMRKIFKEMLTLEDDEALIYHCSMGKDRTGMVSVIVLMALGLGDREILRDYL LSREYSQDWDEADENDRLGQQIAKMNQTQVSQTAFYGITETIRQTWGGFDRYFASLGFGQ GDLGRLRDKFLE >gi|300496515|gb|AEAT01000088.1| GENE 9 8424 - 9932 1989 502 aa, chain - ## HITS:1 COG:SPy1684 KEGG:ns NR:ns ## COG: SPy1684 COG0554 # Protein_GI_number: 15675545 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 3 501 4 502 508 720 70.0 0 MSEQYILAIDEGTTSTRAIIFNHAGQQVASVAREFTQYFPKPGWVEHQAEEIWNAVQITT STALINSAIRPDQLAAIGITNQRETTVVWDKETGRPIYPAIVWQSRQTSDIAEKLVKDGY SEMIRQKTGLVIDPYFSATKIRWILDHVEGAQERAEKGELLFGTIDTWLVWKLTRGKVHV TDCTNASRTMLFNIHDLTWDQEILDLLKIPRAMLPEVKSNSEVYGETDPYQFFGGRVPIA GMAGDQQAALFGQLAVKPGMVKNTYGTGSFIVMNTGEEPIESKNNLLTTIGYKLGDQVNY ALEGSVFVAGSAIQWLRDSVKLLNSAPESEQAALESKDDNEVYVVPAFTGLGAPYWDSEA RGAIFGLTRGSSDKDLIKATLQSLGYQTRDVVDTMQKDSGIEIPVLRVDGGASNNNYLLQ FQADLLGKKIERAADLETTGLGAAFLAGLAVGYWQDLDSLKEIAKTGAAFAPKMEEAERD RLYAGWQRAVLATRVFAHGKDF >gi|300496515|gb|AEAT01000088.1| GENE 10 10129 - 10797 1231 222 aa, chain + ## HITS:1 COG:SPy1034 KEGG:ns NR:ns ## COG: SPy1034 COG3442 # Protein_GI_number: 15675031 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 6 215 18 228 263 184 49.0 1e-46 MADNLIRIAYLYEDLMNTYGDSGDVKILRYFLQKKGWQTQIDNISLGSQFNAADYDFVFF GGGQDYEQSIVAKDLQRFKETLNDYIQAGNPMLAICGGYELMGTHYNTISGTKIKGLGIL PLHTEFDPEKRMIGDTKYETEWGPTIGFENHSGQTFLDDRKMLKPFAKVVEGYGNNHEEK EDGVRYKNFIGSWSHGPMLKNENVANALVDMILKRHAARVAQ >gi|300496515|gb|AEAT01000088.1| GENE 11 10923 - 11159 389 78 aa, chain + ## HITS:1 COG:no KEGG:Ldb2101 NR:ns ## KEGG: Ldb2101 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 73 1 73 78 127 98.0 2e-28 MKIDILRYLDDKHLTIYRVAKESGYGYTTLHKSFNKQQSNSTSINLRDLDAIARAKHLAM WQVLRELENDYLSDDDDD >gi|300496515|gb|AEAT01000088.1| GENE 12 11283 - 13373 1439 696 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 47 694 151 811 815 558 45 1e-159 MDYDNFNDMDDLFRELMNGLSGFNSENRRYLINGRQVTPEEFAEYQKTGQLPGQGQAKNF QGKQKKANGILEKLGRNLTAEAREGKLDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGV GKTAVVEGLAQAIVHGDVPEAIKNKEIISIDISSLEAGTQYRGSFEQNIQDLVKEVKDKG NVILFFDEIHQILGAGGMGDGNGSKGMSDILKPALSRGEITVIGATTQDEYRNTIMKDAA LARRFNEVTVNAPSPAETFKILKGIRSLYEKHHNVELPDDVLRAAIDYSVQYIPQRSLPD KAIDLLDMTAAHLAAQHPVTDAKTIEKQIKEEKQAQEKAAEKEDYEAALDHKAKAEKLEK QLSENHKERKTVATPADVAAAVERLTGIPVSKMGASDIERLKGLSSRLKAKVIGQDEAVE AVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYS DRTAVSKLIGTTAGYVGYDDNSNTLTEKVRRNPYSIILLDEIEKADPQVITLLLQVLDDG RLTDGQGNTVNFKNTIIIATSNAGFGNEQLMGDAKKDEKLMDRLAPYFRPEFLNRFNAVI EFKHLTKEDLKKIVNLMLADVNKTLAKKGISLTVSESAKDYLIEQGYDEAMGARPLRRVI EQEIRDKVTDYYLDHLDVKKLKADMVDGTLVISEDK >gi|300496515|gb|AEAT01000088.1| GENE 13 13715 - 14326 464 203 aa, chain + ## HITS:1 COG:VCA0956 KEGG:ns NR:ns ## COG: VCA0956 COG2199 # Protein_GI_number: 15601709 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Vibrio cholerae # 78 153 164 241 339 61 34.0 8e-10 MDYYGLTLPEVIGHNDDELGLNVHPENFQESEMQLLEDGGPVKERGKTRSRGRIREIMIL KAPVYDQDQIVGLIGFFMDITNTSKQINRLENEAARDDLTSLKNRHNFARDFNYLTGKPI LAMMLEVDHFKKFNDNFGHRYGDEVLKKISQALLKIYGIGHCYTGTGATNSWCSATLLIL TRLRKKTGSSGKNWNMPGSWTST >gi|300496515|gb|AEAT01000088.1| GENE 14 14423 - 15271 1185 282 aa, chain - ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 1 245 174 418 449 196 46.0 4e-50 MGATSSTQASADYLAAPLTNGFLQGYNTLDALAALAFGITVVTAIKGFKIKEGKETSLAL AKTGAIGFAGIAIIYLILVALGAGSLHYFKLSENGGIAFAQIAHHYLGTFGEALLATLAT ITCMSTAIGLVVAFAQDFHKRFPKISYRTFLTFNCLLSFAIANFGLTTIIAWSTLVLMFL YPLAIALIFCGLISKFFNNDPAVYKFAVYFTIIPALFDGLNAAPSIISNIAFAKAALTFA GRYLPQKIQRESKLSFHAVSFYSYSKNSAGKGCRRCPCGRSF Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:33:18 2011 Seq name: gi|300496513|gb|AEAT01000089.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00114, whole genome shotgun sequence Length of sequence - 1654 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 107 - 151 1.1 1 1 Tu 1 . - CDS 176 - 1399 512 ## COG3547 Transposase and inactivated derivatives - Prom 1583 - 1642 5.3 Predicted protein(s) >gi|300496513|gb|AEAT01000089.1| GENE 1 176 - 1399 512 407 aa, chain - ## HITS:1 COG:SPy0732 KEGG:ns NR:ns ## COG: SPy0732 COG3547 # Protein_GI_number: 15674786 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 204 385 13 194 196 135 45.0 1e-31 MDSLKTVFGIDVSSRKSNVCIMVNGQKVNDYAISNDMVGFNQLLDDLKQVTNPQIIFEAT GVYSRRLQAFLDMHELRYVMMNPLEAKRKTKDDLHQNKTDKLDAMYLAKMQSEHPQRLAY VQSEEYQELMANNRIYEQASHDLITNKNRLHKAIQLTFPEIEHLMANPRGKNYWSIVLKF PHPNIVLETKEADIIDFLKSLSGIGEKRANDLAQRLIRLAKLACPAVKKSSAHIRGLEMA INNILSAEETCQTALKEMAKLAPKRDLEILKSIPGIAENTALRIISELGDIRRFNNPNQL NAFVGVDPQVYESGNLTAHLSISKRGTAIGRKVLYLSINQIQSAKKAGNPCHIADYYEKR KRSSETASHKKAAIASIHKLLRTIFALITNDQLYSYDIAKHNQRLLS Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:33:20 2011 Seq name: gi|300496505|gb|AEAT01000090.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00252, whole genome shotgun sequence Length of sequence - 6676 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 5, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 795 340 ## LDBND_1481 dextransucrase - Prom 847 - 906 4.8 + Prom 791 - 850 5.2 2 2 Tu 1 . + CDS 904 - 1422 293 ## LBUL_1177 transposase + Prom 1491 - 1550 1.8 3 3 Tu 1 . + CDS 1587 - 1793 165 ## LDBND_1482 transposase 4 4 Op 1 . - CDS 1813 - 2061 353 ## LDBND_1483 hypothetical protein 5 4 Op 2 . - CDS 2137 - 3678 2333 ## COG1376 Uncharacterized protein conserved in bacteria 6 4 Op 3 . - CDS 3694 - 4545 334 ## PROTEIN SUPPORTED gi|90022317|ref|YP_528144.1| ribosomal protein S15 7 4 Op 4 . - CDS 4547 - 5833 1745 ## COG1686 D-alanyl-D-alanine carboxypeptidase - Prom 5956 - 6015 80.3 + TRNA 5932 - 6015 57.5 # Leu CAG 0 0 - Term 6146 - 6200 11.2 8 5 Tu 1 . - CDS 6220 - 6675 704 ## LDBND_1487 pyruvate oxidase or other thiamine pyrophosphate-requiring enzym E Predicted protein(s) >gi|300496505|gb|AEAT01000090.1| GENE 1 3 - 795 340 264 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1481 NR:ns ## KEGG: LDBND_1481 # Name: not_defined # Def: dextransucrase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 264 1 264 1294 384 99.0 1e-105 MNSRKKMMNEPSSEKQRWSLRKISVGMTSVLLGATMFWASGAGSQVKADTTTASEQAAQT QTNTARKAAGTESTEQTEDNNANADAGKTAETPAATNNGSQETTTESTAASSSAQNQGQA ATATSSTTTKAASSILSQADSETANSNTSQAVTATSSATTEAVSSAANQTGQKVSSSNNK SHEAKAHTTSAASGSISQVNDGQPITGLRHYSNNKLEYYGKDHVQYRNRYASQGNKWYYF GSNGDAVTGLRHYGNNKLEYYGKD >gi|300496505|gb|AEAT01000090.1| GENE 2 904 - 1422 293 172 aa, chain + ## HITS:1 COG:no KEGG:LBUL_1177 NR:ns ## KEGG: LBUL_1177 # Name: not_defined # Def: transposase # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 21 152 1 132 179 256 96.0 2e-67 MLNQLQTKPYSHRLQVEFRTLSKICKKLYYKYAPSRLTHRRNASLVKVPDYEIIALLVWQ AEEGISSQRRFARCWGLCGLSRSRFNRRARALLGITAQIVNDLKSRVDLLDQYMIIDSLP MPLCQPIRNRRAKVFEGTANIGYNSTKKFYSFTTTVLKAILPYLRTGMFLAM >gi|300496505|gb|AEAT01000090.1| GENE 3 1587 - 1793 165 68 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1482 NR:ns ## KEGG: LDBND_1482 # Name: not_defined # Def: transposase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 68 88 155 155 126 98.0 3e-28 MKGAKQHNKRELMAIRRTIESVFSVLKYYGIENILARNVDGFQQTVEIIVLTYNISYILQ RYGFRFFN >gi|300496505|gb|AEAT01000090.1| GENE 4 1813 - 2061 353 82 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1483 NR:ns ## KEGG: LDBND_1483 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 9 82 1 74 74 119 95.0 6e-26 MWKSPFFALYRIELLIVAVLQDDIYNATSYTSHDEAVTDRGTGTHYALASELYRELTDKS QQSLTDDDKTYVLDQELLISNK >gi|300496505|gb|AEAT01000090.1| GENE 5 2137 - 3678 2333 513 aa, chain - ## HITS:1 COG:BS_yciB KEGG:ns NR:ns ## COG: BS_yciB COG1376 # Protein_GI_number: 16077404 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 354 494 60 182 194 66 34.0 1e-10 MKKSKYLTLLSVAALTLLTSGLGSQAVLADTDTAQTTNTSTNTTTDTSETSTALNHQEAK GQKLTTPVGTRPNASDAISNKADLKSVQGYNWKTAPDVSAAGSQKATVVITYTDGTTSEV EVDLEVTSYASQNSPAAKTGLTVKVGKSLTASSAISNLSSLKNVHSVTWKQAPSTAKVGT VKGTVLVTYTDKSTDTVDVTVKVSSVVTTKKSVKKSKKKQYITKTRKIILDRPGKNKTIT QKVKLSRTVTITTTTTKTYTDGKLTKTSKKAKKSYGKWSKGTWKSYKVPAISGYKRSTTK VKAKTVTSKTKNVTVKVSYKRVLHKPANAPYYDPADMRAKTGAYYFQSSEKRAYPNLAKY KNVWIRVSILGNRVYVMSGKRVIYTMYSSAGRFEMTNGKYQSDTPRGTFYLKAAYGPSFM SSDGVGARYYMAYYGSDYLFHSVPINNYGSGVYYNGYHYGYGGVGSTAHLTVQGTKPDSH GCIRLTLSDARWLYGQRTSGKLKVGTKVVIKYK >gi|300496505|gb|AEAT01000090.1| GENE 6 3694 - 4545 334 283 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90022317|ref|YP_528144.1| ribosomal protein S15 [Saccharophagus degradans 2-40] # 16 255 242 475 500 133 37 4e-31 MKSIDEDLARQVVRPRPAESHKGNYGRVLLIGGNHQYGGAINMAAEAAVYSGAGLTTVAT DPVNFAALHARLPEAAVLDYNLDLAKQISRSNVILCGPGLGLEEKAWEILEAVCQHAGSD QTIIFDASALDLLSQKPDLLRNLHAGLVILTPHQMEWQRLSGIKIADQEDQANQAALSRL FSGKMKSVILVLKAHRTRVYAFTGEIYRNSAGNPGMATGGMGDTLAGIIAAFLGQFGPKL TSVLAAVYCHSRAGDDLYQSSYLVRPTQISAYMPRLMKRLSTC >gi|300496505|gb|AEAT01000090.1| GENE 7 4547 - 5833 1745 428 aa, chain - ## HITS:1 COG:BS_dacA KEGG:ns NR:ns ## COG: BS_dacA COG1686 # Protein_GI_number: 16077078 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus subtilis # 2 426 3 426 443 255 39.0 1e-67 MLKKIKKALLSLAASGLLLTGISTWQAAPVAAATANYQQQDLNLDVKAAIAVDADSGQIL YAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTAKPTAAIAKISQNTEYSNVPLTS GHAYTIKELYRATLIESANGAALTLAQAVSGDQVTFVKKMRELLTSWGIKDAKIYNACGL ANGSLGSAAYPGVGKDVENEMSATDMAIVCQKLLKDFPEVLQTTSITSATFSSGSTQSQM TNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNGHRIITVVLGAKHANSQDP SRFVQTAKLMHYVYQNYTAVTLKKGSSISGANTVKVPEGKETSSKVVLGKTVTIWAKQGS KLQTSLSKTAVSAPVKKGSKMASYKFSATSGKLPSLSGKTVTAPAVATQDNQEANFFVRL WRSIFGSK >gi|300496505|gb|AEAT01000090.1| GENE 8 6220 - 6675 704 151 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1487 NR:ns ## KEGG: LDBND_1487 # Name: not_defined # Def: pyruvate oxidase or other thiamine pyrophosphate-requiring enzym E # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: Pyruvate metabolism [PATH:lde00620]; Metabolic pathways [PATH:lde01100] # 1 151 466 616 616 291 100.0 7e-78 TNETLGFIEAEQRDESNQPLSGVIIPDNDWAKVAEGMNMKAFTVHDKAEFQAAVEEWKKM DGPAFIDVKYTKHMAYSTELNTLDDPEFVKYYHAEALHPFSYFAEKFGLEIDAASGASGH SEDKAEALQVQATSSASTPETAPDTTSGASH Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:33:39 2011 Seq name: gi|300496493|gb|AEAT01000091.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00226, whole genome shotgun sequence Length of sequence - 10798 bp Number of predicted genes - 11, with homology - 10 Number of transcription units - 5, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 249 - 287 7.0 1 1 Op 1 2/0.000 - CDS 306 - 932 954 ## COG1309 Transcriptional regulator 2 1 Op 2 . - CDS 936 - 2936 3248 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component - Prom 2982 - 3041 6.0 - Term 3010 - 3066 15.7 3 2 Tu 1 . - CDS 3073 - 3462 525 ## LDBND_1971 hypothetical protein - Prom 3497 - 3556 6.2 + Prom 3539 - 3598 8.8 4 3 Tu 1 . + CDS 3622 - 3846 345 ## LDBND_1972 hypothetical protein - Term 3978 - 4020 4.7 5 4 Op 1 6/0.000 - CDS 4021 - 5307 2097 ## COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) 6 4 Op 2 7/0.000 - CDS 5297 - 5539 496 ## COG0236 Acyl carrier protein 7 4 Op 3 6/0.000 - CDS 5617 - 6849 1923 ## COG1696 Predicted membrane protein involved in D-alanine export 8 4 Op 4 . - CDS 6846 - 8348 2162 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 9 4 Op 5 . - CDS 8364 - 8513 244 ## - Prom 8630 - 8689 4.4 10 5 Op 1 . - CDS 8706 - 9008 499 ## LDBND_1978 hypothetical protein 11 5 Op 2 . - CDS 9045 - 10253 1579 ## LDBND_1997 hypothetical protein - Prom 10306 - 10365 6.9 Predicted protein(s) >gi|300496493|gb|AEAT01000091.1| GENE 1 306 - 932 954 208 aa, chain - ## HITS:1 COG:L53789 KEGG:ns NR:ns ## COG: L53789 COG1309 # Protein_GI_number: 15672643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 73 1 70 189 77 52.0 2e-14 MPSQTFFNLPKEKQDRIMAAAREEFFTHSFDEASINRLIKAAGIPRGSFYQYFADKEDVY FYLGDQISQRMIEGARKELAAYGYDPFALARKVLPQWLDEIFYGENAAFFYRKIDMLHSQ QVPRPKQAEDPLACLSAQEIAGLTAKVALQDRTDLKFLLHSLLLAFISCLSEGAEDYEAG RPVDTAKLAQVLDRRLSYLENGFKKKAD >gi|300496493|gb|AEAT01000091.1| GENE 2 936 - 2936 3248 666 aa, chain - ## HITS:1 COG:L119891_1 KEGG:ns NR:ns ## COG: L119891_1 COG1136 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Lactococcus lactis # 1 292 1 290 290 252 46.0 2e-66 MTVLELKDVKKYYKMPGGGQYEALRGVNAKFAAGEMVAIVGESGSGKSTLMNTIGGLDSD FEGAILYEGKNLRDFSQKEMVNYHKKSIGFIFQNFNLIPHLDLIDNVSIAMTLSNADEKT RRGRAEELLTQVGLKDHMHKKPDQLSGGQKQRVAIARALANDPDVIIADEPTGALDADTT DVILNMIRDIAASGKLVLMVTHSDKVASHCSRVLRIDQGQIVSDQEQKPLDHHLEQRTEV KIQQMSLFKAISLAFKNMKAKFGRNALVSTGMGIGIMSVILMLSLGKGVTSYVSGQMSTY SNPLVAEIQKTSSQKMRQQGMQAQQTGDKAALAKQQQNNMASLSGTSSASAFSKQDLKKL EKIAHVKKLQKGYSAISLGTNQLKYGKKTASMIYLKTVNDGIAKSEVKKGRLPKAGKDEV MIDSGSADNLGKKILGKKVKASLQIGTKTITKTVKVVGIYEASGSGQVSTLLLPYSDLAK IFKDNGLSLKANVVYLTATDKQYTSSIKQAAKDKGFAGSMQEQMTEMFDSILSVLTYVLT AIAAVSLLVSAIMILVVLNISVVERTQEIGVMKALGARRKDIRRIFSSEAFLLGLASGIV GIALTWLLAQGINSFTQSAFKAAVVSLTPQYALTGLLISIVISMIAGILPANHASKLDPV EALRKE >gi|300496493|gb|AEAT01000091.1| GENE 3 3073 - 3462 525 129 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1971 NR:ns ## KEGG: LDBND_1971 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 129 1 129 129 231 98.0 1e-59 MVKMTFSPEAGEFLQKKLGNKPVLLLALNDGSNKYSLQGGSCTIGANFQFVALDQADADY QIKIDNDLGLDLYTGQAEMGFLDDSLSVGEQYGMLSLSDGSGLIDSAVGVNVYEPSKLTA EQIQNGASC >gi|300496493|gb|AEAT01000091.1| GENE 4 3622 - 3846 345 74 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1972 NR:ns ## KEGG: LDBND_1972 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 74 1 74 74 115 98.0 7e-25 MTKVKFNLDDELAILLQAYQDQSGTDRDAIINQAVKQLLVKKLGKKRIAQLLKDSEDGSD YQLEQFFSSYDWLE >gi|300496493|gb|AEAT01000091.1| GENE 5 4021 - 5307 2097 428 aa, chain - ## HITS:1 COG:SPy1309 KEGG:ns NR:ns ## COG: SPy1309 COG3966 # Protein_GI_number: 15675258 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Streptococcus pyogenes M1 GAS # 6 412 4 415 416 318 43.0 1e-86 MKNKTKLWLIFGPVICAVLLLMGILSLPWERTFSKGSLFQAAASQTTTVFKGKAMRQKAY KQGYVPFYGSSELSRFDNMHPTVLATKYHRSYTPFLLGGPGSQSLAQYLGMQEAPSKKAV VIISPQWFTPQGQNPDAFTLYYSPLHASDFILNAKDTEADRYAARRLLQMPSVKSEHVIH HALLEIAAGVGISKMERYYLRWRRQIYSTEDKFFTSLQLRDRLPKIEQQGAKLPDTYSYE GLKKASEKEAKKDTKGNRFGIRTSFYKKRLNAKLLKKLKGSQKKFNYVESPEYSDFELLL NQFAKDKTQVLFIIPPVNAKWQKYTGLSQKMYDTATTKIKHQLISQGFDNIYDLSKDGKK KYFMEDTIHLGWNGWLAVDQAVKPFMEQKYAEPEYAINDYYLTKTWREKKKLPTVALTNK DVLAKLKK >gi|300496493|gb|AEAT01000091.1| GENE 6 5297 - 5539 496 80 aa, chain - ## HITS:1 COG:SP2174 KEGG:ns NR:ns ## COG: SP2174 COG0236 # Protein_GI_number: 15901984 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Streptococcus pneumoniae TIGR4 # 1 78 1 78 79 71 46.0 4e-13 MDIQKQIVDILAEATGEDFSDNMDQELYESGIMDSMATVQMLLTLQETFDITVPVSEFNR DDWNTPNKLVEQVKKLQDEE >gi|300496493|gb|AEAT01000091.1| GENE 7 5617 - 6849 1923 410 aa, chain - ## HITS:1 COG:SPy1311 KEGG:ns NR:ns ## COG: SPy1311 COG1696 # Protein_GI_number: 15675260 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Streptococcus pyogenes M1 GAS # 4 408 11 417 418 370 50.0 1e-102 MINLQPYENPQYFVYLLIALLPLVIGLYFGKRYKWYEALVSLAFIFLIFDADKWQQGVTL ICYIVYQFLVTFAYQHYRKKTGKANKTWVFCLAVILAILPLAGVKIWPIVPHKQGIDFGF LGISYLTFKTVQVVMELRDGTIKQVDPVMYARFLLFFPTISSGPIDRYRRFVKDYDKAPS REDYIKDLSYAVRYLFQGFLYKFLLGWFFGTYLLPYLEQQAILAGRMYPLHLSWWLLGVM YCYSMYLFFDFAGYSLFAVSISYFMGIHTPMNFNKPFAAHNIKEFWNRWHMTLSFWFRDF IFIRFTFFAMKKRLIKNRNRLSQVAYLVNMMVMGVWHGLTWYYIVYGLYHAVAMIINDIW LRFKKKHKLVKHNKFTEAVAIFVTFNVVCLSFLIFSGFLNNLWFNVPLGK >gi|300496493|gb|AEAT01000091.1| GENE 8 6846 - 8348 2162 500 aa, chain - ## HITS:1 COG:SP2176 KEGG:ns NR:ns ## COG: SP2176 COG1020 # Protein_GI_number: 15901986 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 3 499 8 515 516 468 47.0 1e-131 MRNIVKTIDEIAQREPDRVVYDYLGQKNTYADLIKRANSWAALLKEKAPAKVPVMIWGGQ TFDMLACFLGCVKSGHCYVPIADYSNAERIDLVREVSASPVLIAISDLPEVDLGDLTLLK PDDVPEEGTADEADYVKGDENFYIICTSGTTGKPKGVQISHDNLVSFVDWELKDFDLPDH PRFLAQAPYSFDLSVMSIYPALLSGGELVVLPHEVTENFAQLFKALPETDVNVWVSTPSF AQMCFLDRTFDAEHHAGLSHFLFCGEELPRKEVEMLKKRFPDSRIFNTYGPTEATVAVTQ VEITPEILEKYDRLPIGYVKEDTEITIDLSQGDDGKSGEMIIAGPSVSKGYINNPEKTEE AFYQEDGVQHYRTGDVGYFDGDLLFYKGRIGFQIKFNGYRIELEEINFYMNQNPLVRHAV AAPIYKPDHTIKQLVAVVELNDGVRRKFAEGTITKQIRDGLAKDVMPYMIPQRYLYKDAL PISQNGKVDIKAVIKEVNQA >gi|300496493|gb|AEAT01000091.1| GENE 9 8364 - 8513 244 49 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MENKTPVSRGKVIRSFILRTLLYSLILLGLIYLYEYYGLGSTGFIYNEF >gi|300496493|gb|AEAT01000091.1| GENE 10 8706 - 9008 499 100 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1978 NR:ns ## KEGG: LDBND_1978 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 100 1 100 100 172 100.0 3e-42 MDSQLAKKIIIDVQISGWSCLIPASGLLYLYQVTHYASFLWGLALVVLYAAYVLATSKLD KWQSPSYVLRMSLIAMFFVGFLPSIPLLFCYSQERKAGLK >gi|300496493|gb|AEAT01000091.1| GENE 11 9045 - 10253 1579 402 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1997 NR:ns ## KEGG: LDBND_1997 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 402 1 402 402 767 99.0 0 MGKKDRKSGKKLVSRKKHHFHRKLRLLIFNLILLAGLAAWSYYWAYPAYSQWQMKQAMLA ARPKLTKAKDGTSTSPAWHKLTAYRKAIRDNYSFVYQAAYQTPKRTTVGQDVVIPGLIST RSYDYQAKKITSASAMTPQGIAVVYNYLLITAYDGQHRHASVIYVLDKKTGKFLKTVRLP GRQHLGGIAYDPKGMQIWLTGSKDGQSALMSFSLAKLIEYVASAKTSDQLVYDHEIPINS IAKASALTYYDDQLFVGYFNENGHGKVASYKLARSGQYKNTITTSEISSINESVSWSDPD GTTSMNKQIQGLAIYGDKIFLSQSYGSKDSKLYIFPIMAVNNLDESNAEQVVRMPPYLEQ ITVYKGQLLCLFESASSQYARQDITVMDRTLSVNINALLDNN Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:34:01 2011 Seq name: gi|300496483|gb|AEAT01000092.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00072, whole genome shotgun sequence Length of sequence - 11940 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 5, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 70 - 129 10.5 1 1 Tu 1 . + CDS 218 - 1210 1687 ## COG1052 Lactate dehydrogenase and related dehydrogenases + Term 1255 - 1293 9.0 + Prom 1271 - 1330 4.7 2 2 Op 1 16/0.000 + CDS 1411 - 2322 1207 ## COG0207 Thymidylate synthase 3 2 Op 2 . + CDS 2336 - 2824 443 ## COG0262 Dihydrofolate reductase 4 2 Op 3 . + CDS 2858 - 5266 2993 ## COG0474 Cation transport ATPase + Term 5490 - 5535 1.4 5 3 Op 1 10/0.000 + CDS 5666 - 6526 1647 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 6 3 Op 2 32/0.000 + CDS 6563 - 7618 1720 ## COG1135 ABC-type metal ion transport system, ATPase component 7 3 Op 3 . + CDS 7615 - 8328 1097 ## COG2011 ABC-type metal ion transport system, permease component + Term 8338 - 8383 8.3 + Prom 8406 - 8465 9.0 8 4 Tu 1 . + CDS 8498 - 9895 2052 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 9932 - 9969 6.2 + Prom 9961 - 10020 4.2 9 5 Tu 1 . + CDS 10073 - 11722 2336 ## COG1866 Phosphoenolpyruvate carboxykinase (ATP) + Term 11760 - 11793 3.1 Predicted protein(s) >gi|300496483|gb|AEAT01000092.1| GENE 1 218 - 1210 1687 330 aa, chain + ## HITS:1 COG:TP0037 KEGG:ns NR:ns ## COG: TP0037 COG1052 # Protein_GI_number: 15639031 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Treponema pallidum # 1 323 1 323 331 192 33.0 8e-49 MKAYLFGVTPVEEAFLKEWQDQHPDDEISYTHSPLTADNLELAKGFEAVSTQQEEPLTAS DLKPLAAGGVKHLALRKVGADNIDLEAAAKYGITVANVPAYSPRAIAENGLTGAMYLLRK WGYYHRKMRRGDFTRSTELMSDEIFNQTVGIVGLGRIGAAAAEMYHALGARVIGYDPVYN ASLEPFLDFVDFETLIKESDIVQVHIPLTPENKGMFSANEFAKMKDDAILVNQSRGELVD TAALIVALKYHEIGGAALDVLEGEEKIFGRKFEDVGSLPDEYTELINLPNVVMSPHSAYY TKMAVKNMFFQSMTDIERTLSGKKAFFKVN >gi|300496483|gb|AEAT01000092.1| GENE 2 1411 - 2322 1207 303 aa, chain + ## HITS:1 COG:lin1988 KEGG:ns NR:ns ## COG: lin1988 COG0207 # Protein_GI_number: 16801054 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Listeria innocua # 1 303 12 314 314 433 66.0 1e-121 MTEGNDKNDRTGTGTRSLFGAQMRFDLSQGFPILTTKRVPFGLIKSELLWFLRGDTNIRF LLEHKNHIWDEWAFKNWVTSPEYQGPDMTDFGLRSQKDPGFKAVYDEEMQKFCQRILDDE AFAQKYGNLGDVYGAQWRHWGKRDGGFIDQIADVIEQIKTNPDSRRLIVTAWNPEDVPSS ALPPCHVLFQFYVADGKLSLQLYQRSGDMFLGVPFNIASYSLLLSLIARETGLEVGEFVH TIGDAHIYKNHFAQVEEQLKRKPFDAPTLWLNPEKKKVADFEMADIKLVNYQHGSTIKAP VAV >gi|300496483|gb|AEAT01000092.1| GENE 3 2336 - 2824 443 162 aa, chain + ## HITS:1 COG:lin1987 KEGG:ns NR:ns ## COG: lin1987 COG0262 # Protein_GI_number: 16801053 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Listeria innocua # 1 160 1 159 160 136 45.0 2e-32 MLSYVWAEDEKGAIGYQGRLPWHLPADLAHFKAKTMGHPMLMGRKTFESLPGLLPGRQHV ILSTRKLDLPAGVLQLKSEEEVSAWLKEQAGEVCVIGGSSLFALLADQVDKLEVTRIKGI FPADTYMPNLDWAAFALVKSEAHQADGKNKYDYVFETYLRKK >gi|300496483|gb|AEAT01000092.1| GENE 4 2858 - 5266 2993 802 aa, chain + ## HITS:1 COG:L168650 KEGG:ns NR:ns ## COG: L168650 COG0474 # Protein_GI_number: 15672557 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 8 763 5 764 775 677 50.0 0 MKTNLETGLTEEEVAQKSAAGKVNTTIDDEFKTNRQIIVENTFTYFNLIFLVLTILLLIA GDIRDLTFLPVIILNTIVGIVQEIRAKSVLSKLQVLNQTKLLALRGGKRRQVPIDQLVEG DLVLLKAGDQIPADAKVVDGSVRVNESLLTGESDEIAKEVGDELLSGSFVVSGEVMAQLV KVGSESYIAKLTAEAKAMGEGEESKMIRAINRLIKWVGIIIIPMGLALFAQAYFLNHRSF AESISSMEAAIIGMIPEGLYLLTTVALALAAMRLARNQVMLHDMKSVETLARVNVLCVDK TGTITEPKMAVEKVVPAKNYPGNDLEDRLAAYVSNMPVDNITAEALNQKFGQDQPLVNAK RIIPFTSVNKYSGAVFAGYTLLLGAPEMILRSQLKACQEEFARYPEEGYRVLAFAKYPAE LADEKERLTQEVEVLGYVLLSNPIRKEAKETFAYFAKQGVEIKVISGDNPVTVSRVAGQA GIAGAEKYIDAQTIKPGEYEQAMAEYNVFGRVKPEQKKEFVQALQKIGKTVAMTGDGVND ILAMKEADCSIAMASGNSAAVQASQVVLLDSNFAKMPQVVNEGRQVVNNIERSAGLFLVK NIFSLLMAVFSLILTINYPIKPAQITLISSFTIGLPSFLLALEKNHSRIRGNFTVNILTK SIPGGITDWLAVSILVLTNKFTNIGDNEVATASTALLVLVGLMVLFWISRPLNKYKLGVL ALSVVCIILSIIFIPGFFKLSPLSGRAVFTVVVLFFAGMTLFRIMSRICDGIKEVSNVLT EKGKDAKLRDLLAAYGKDRDEL >gi|300496483|gb|AEAT01000092.1| GENE 5 5666 - 6526 1647 286 aa, chain + ## HITS:1 COG:L117444 KEGG:ns NR:ns ## COG: L117444 COG1464 # Protein_GI_number: 15672300 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Lactococcus lactis # 5 286 4 285 286 259 56.0 4e-69 MRKKKQRNIIIAIVSVVVLAVIAFFSFGKKGSQQSAKTVTVTVGTVGATKAERAIWKSVA ATAKKKYGIIVKTKNFSDYNQPNSALKSGDLDLNAFQHYNFLNNWNKANKSNLVAIGKTY IAPIRLYSLKYKSLKSLPKGATIAIPNDATNEARALLVLKNAGLITLKGTSATKLYSVAD IKSNPKNFKIKEVATEQAARVLKSVDAAVVNNDYANPAGLGDKQTIYVEPINKDSYQWIN IIVARKKDKNKKAYKEVVKAYQTEKTKQLYKKYYGIKQVAAWDAKF >gi|300496483|gb|AEAT01000092.1| GENE 6 6563 - 7618 1720 351 aa, chain + ## HITS:1 COG:SPy0320 KEGG:ns NR:ns ## COG: SPy0320 COG1135 # Protein_GI_number: 15674484 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Streptococcus pyogenes M1 GAS # 2 344 4 350 354 325 53.0 9e-89 MSIIQLDHVSVTFKRKKATDVQAVQDVTLHIEKGDIYGIVGFSGAGKSTLVRTINLLQKP TAGDVVVGGVDFVKDGKQVISGKDLQAHRRKIGMIFQQFNLLNETTVIENIAFALKHSDL SDDELEEKCHKLLKLVDLEDKANAYPAQLSGGQQQRVAIARALANDPEILLSDEATSALD PQTTIQILDLLKKLNRELGLTIVLITHEMAAVKKIANKVAVMENGRVVENGNLRDVFLAP KAELTQKFVGGSLAVVDTLKSLNISLAENEALYQLVYSLNNVAKSIIIELYREVGVEASM LYGNVEVLADEPVGTLLVTVKGDADKQKATLKFLNDEGITVTELDERGNRL >gi|300496483|gb|AEAT01000092.1| GENE 7 7615 - 8328 1097 237 aa, chain + ## HITS:1 COG:L122401 KEGG:ns NR:ns ## COG: L122401 COG2011 # Protein_GI_number: 15672305 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Lactococcus lactis # 5 235 1 231 231 239 60.0 5e-63 MINGLVHWIAQNFPNIYNLGWTGDTGWGTSILQIIYMTFWPSIFGGVLGLFFGVILVLTE PGGILENKFWFNFCDKLISILRAIPFIILLAFISPLTRLIVGTEIGDTAALVPLTLGIFP FYARQVQVALESLDPGKVEAAQSLGASNWDIIFDVYLKETRSEIIRVSTVSIISLIGLTA MAGAVGAGGLGTTAIQYGYRDFANDVTFLATVLVVIMIFIVQVVGDFLAKKLNHQHR >gi|300496483|gb|AEAT01000092.1| GENE 8 8498 - 9895 2052 465 aa, chain + ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 18 464 62 506 506 449 55.0 1e-126 MAKYEFKSSPIDLVNPSYDLVVIGAGGTGLSAALQAHELGASVAVFEKNEVLGGNTSKAS SGMNAAESLVQFKHGIIDNKADFYQETLKGGGNLNDEAMLSYFVDHAALAIDWLKQYGVE LDDLTITGGMSKKRAHRPASMAPVGGYLITGLLKSIEAARIPVFNKTKVVKLLQDEKGKV TGIDIVGPDGRRKVMAKAVILATGGFGASKEIIKKYRPDLEGYKTTNQAGATGDGLILGE EAGAELVQMDFIQVHPTAQTDGEKTFLIGEAVRGEGAILVNKAGQRFINELDTRKVVSAA ITGLNEDGAYLIFDQGVRDHVKAVEFYDHIGLVEHGATLEELAGKIGVDAAGLEATVASW NEAVKDQDDQAFGRTTGMDRDISVAPYFAIHIHPAIHYTMGGLHINLETQVLGKDDKVIE GLYAAGEVSGGLHGNNRIGGNSVAETVVFGRQAGIQASKFVRGEN >gi|300496483|gb|AEAT01000092.1| GENE 9 10073 - 11722 2336 549 aa, chain + ## HITS:1 COG:APE0033 KEGG:ns NR:ns ## COG: APE0033 COG1866 # Protein_GI_number: 14600399 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxykinase (ATP) # Organism: Aeropyrum pernix # 189 481 140 434 493 67 25.0 6e-11 MSTRERYQQSELVKANSKFSRIRATIESAFYGNNVHEVKSVAEAYELAKRQPGVIETDLP ILHTSDLGLPVGAKQLVYNHGKILGRTASARHFVDDSEEDAAALTNRLYEDIYAGHKQKY LKTTVLVGLDPSFSLKAHLMLPEDQAFNLLSYMLNFRFFDEKAAEMYGKSKLYDEGDLYF YFDPNVTDPAYPNGLAIFDAPHNCAAVFGLRYFGELKKGTLTLAWALAHRHGYAACHGGE QAFHFEDKKDKVFAFYGLSGSGKSTLTHADHGGKYDITVLHDDAFIISREDGSSVALEPA YFDKTHDYPAGHHETKYYTTVMNCAVTLDEAGRKVLVTEDLRNNNGRVIKSRYTSANRVD VEENPITALFWIMKDNSLPPVLKVTDPVLATTLGLTLATKRTSAENLPKGFDMNTLVIEP FADPFRAYPVGGDYGDFKELFTKRGAECYVLNTDAFCGKNIPKELTLEIIEKLVDDTDQW QAFGDFAGVSYMPVADYPVDLDFAEYKHNLRARMQDRLDWLNMYNGEHPKTPLPEEAKEC LEKIVSELK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:34:02 2011 Seq name: gi|300496481|gb|AEAT01000093.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00050, whole genome shotgun sequence Length of sequence - 1016 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 71 - 865 351 ## LDBND_0518 transposase dde domain Predicted protein(s) >gi|300496481|gb|AEAT01000093.1| GENE 1 71 - 865 351 264 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0518 NR:ns ## KEGG: LDBND_0518 # Name: not_defined # Def: transposase dde domain # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 264 200 463 463 533 99.0 1e-150 MAQSKGTDVVIQLLDQALKAGLTAKYVMFDTWFSNPHQIVQISQRGLNVIAMVKKSSKIT YEFEGKRMNVKQIFNACKKRRGRSRYLLSVPVKVGDPAKDGAQIDARIVCVRNRSNRKDW IALICTDMTIDENEIIRIYGKRWDIEVFFKTCKSFLKLGTEYHGLSYDALTAHTAFVFLR YMFMSVEKRDDEDDRTMGELFYCMIDELADITFHHSLQILVEAMFESVKEIFQPTEEQME RFTKAFISRLPKYMQEALSPSLAA Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:34:06 2011 Seq name: gi|300496479|gb|AEAT01000094.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00094, whole genome shotgun sequence Length of sequence - 1301 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 60 - 1238 413 ## COG3464 Transposase and inactivated derivatives Predicted protein(s) >gi|300496479|gb|AEAT01000094.1| GENE 1 60 - 1238 413 392 aa, chain - ## HITS:1 COG:SP1582 KEGG:ns NR:ns ## COG: SP1582 COG3464 # Protein_GI_number: 15901424 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pneumoniae TIGR4 # 5 379 33 406 418 214 34.0 3e-55 MCTAIAELDTCPNCKSADDYIYNGFKVVHIPYISADESNPVIIKVKKHGIFCKNCELYSY PSTQIVDKYCHISNAVKRKIIVGLTKDHSMTSIAEENGVSVTTVQRYLDHCSAQFTPSFD SLPEHLAFDEFRGVGRKLHFICQDGEKHTIVAILENRFKNTIIKYFLQFPEIVRKTVRTV SMDLNCYYGDIVRQIFPNAELVIDRFHMVQMVNRSFIGFRVQVMKQLDKKSREYKLLKRY WKLYMKKYKDLEGSKQFYDRCLKVPYTPAQIVDEGLKCNETLKNTYDFMQDFVYALADKD TKKINDLLDSNIGQYCEQLKTTIRTFRKNRRAVINGAKMSYSNGCLEGVNRKIKQIERTA YGYSNFTHLLKRIRLEQNIICFKKSTKQTCSV Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:34:07 2011 Seq name: gi|300496477|gb|AEAT01000095.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00149, whole genome shotgun sequence Length of sequence - 575 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:34:28 2011 Seq name: gi|300496415|gb|AEAT01000096.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00015, whole genome shotgun sequence Length of sequence - 64218 bp Number of predicted genes - 58, with homology - 58 Number of transcription units - 29, operones - 10 average op.length - 3.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.071 - CDS 35 - 874 854 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 2 1 Op 2 8/0.000 - CDS 965 - 1735 801 ## COG0164 Ribonuclease HII 3 1 Op 3 . - CDS 1725 - 2582 1173 ## COG1161 Predicted GTPases - Term 2588 - 2631 5.4 4 2 Op 1 . - CDS 2657 - 2887 316 ## COG4479 Uncharacterized protein conserved in bacteria 5 2 Op 2 . - CDS 2891 - 3718 1381 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 3828 - 3887 6.1 + Prom 3790 - 3849 5.4 6 3 Tu 1 . + CDS 3872 - 4534 1001 ## COG1272 Predicted membrane protein, hemolysin III homolog + Term 4539 - 4569 5.0 - Term 4527 - 4557 5.0 7 4 Tu 1 . - CDS 4560 - 5750 1623 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase - Prom 5795 - 5854 2.7 + Prom 5753 - 5812 5.7 8 5 Tu 1 . + CDS 5832 - 6731 1208 ## COG1284 Uncharacterized conserved protein + Term 6734 - 6765 3.4 - Term 6722 - 6753 3.4 9 6 Op 1 . - CDS 6766 - 7041 151 ## bpr_I1944 EAL domain-containing protein 10 6 Op 2 . - CDS 7069 - 7341 309 ## Acfer_0802 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 11 7 Tu 1 . - CDS 7579 - 8157 675 ## Ldb1287 hypothetical protein - Prom 8237 - 8296 8.6 - Term 8268 - 8300 2.3 12 8 Op 1 35/0.000 - CDS 8324 - 10096 192 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 13 8 Op 2 . - CDS 10093 - 11835 196 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Prom 12092 - 12151 6.2 14 9 Tu 1 . + CDS 12220 - 13122 980 ## COG0583 Transcriptional regulator + Term 13138 - 13183 11.2 - Term 13126 - 13170 8.4 15 10 Tu 1 . - CDS 13193 - 14017 764 ## Ldb1291 hypothetical protein - Prom 14074 - 14133 7.2 + Prom 14143 - 14202 5.2 16 11 Tu 1 . + CDS 14263 - 14850 787 ## COG0671 Membrane-associated phospholipid phosphatase + Term 14889 - 14946 6.6 - Term 14885 - 14926 6.4 17 12 Tu 1 . - CDS 14946 - 15782 1178 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 15838 - 15897 5.0 + Prom 15956 - 16015 10.2 18 13 Tu 1 . + CDS 16089 - 17366 1889 ## COG0148 Enolase + Term 17387 - 17424 6.4 - Term 17572 - 17612 5.4 19 14 Tu 1 . - CDS 17623 - 18231 640 ## Ldb1297 hypothetical protein - Prom 18435 - 18494 6.4 20 15 Op 1 34/0.000 + CDS 18740 - 19480 294 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 21 15 Op 2 . + CDS 19526 - 21007 2380 ## COG0765 ABC-type amino acid transport system, permease component + Term 21024 - 21067 3.9 - Term 21016 - 21051 3.4 22 16 Tu 1 . - CDS 21055 - 21909 1105 ## COG0583 Transcriptional regulator - Prom 21966 - 22025 10.1 + Prom 21964 - 22023 6.1 23 17 Tu 1 . + CDS 22087 - 24345 2649 ## COG0474 Cation transport ATPase + Term 24439 - 24471 -0.1 - Term 24559 - 24590 4.1 24 18 Tu 1 . - CDS 24628 - 25761 1738 ## COG0628 Predicted permease - Prom 25784 - 25843 11.2 25 19 Tu 1 . - CDS 25878 - 26903 1476 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase - Prom 26944 - 27003 4.3 26 20 Tu 1 . - CDS 27106 - 27993 1409 ## COG1230 Co/Zn/Cd efflux system component - Prom 28026 - 28085 6.3 + Prom 28024 - 28083 6.5 27 21 Tu 1 . + CDS 28105 - 28407 435 ## COG0640 Predicted transcriptional regulators + Term 28438 - 28475 4.1 - Term 28418 - 28469 7.5 28 22 Op 1 7/0.000 - CDS 28486 - 29013 903 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 29 22 Op 2 . - CDS 29003 - 31279 2393 ## COG0608 Single-stranded DNA-specific exonuclease 30 22 Op 3 . - CDS 31276 - 31977 911 ## COG3764 Sortase (surface protein transpeptidase) 31 22 Op 4 . - CDS 31958 - 33796 2678 ## COG0481 Membrane GTPase LepA - Prom 33824 - 33883 5.9 - Term 33864 - 33899 4.2 32 23 Op 1 31/0.000 - CDS 33918 - 35057 1786 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain - Term 35076 - 35117 6.1 33 23 Op 2 29/0.000 - CDS 35140 - 36984 2826 ## COG0443 Molecular chaperone 34 23 Op 3 21/0.000 - CDS 37044 - 37661 718 ## COG0576 Molecular chaperone GrpE (heat shock protein) 35 23 Op 4 . - CDS 37673 - 38752 1470 ## COG1420 Transcriptional regulator of heat shock gene - Prom 38772 - 38831 6.1 - Term 38812 - 38849 3.1 36 24 Op 1 12/0.000 - CDS 38853 - 39794 548 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 37 24 Op 2 26/0.000 - CDS 39809 - 40705 1087 ## COG0130 Pseudouridine synthase - Term 40717 - 40755 4.2 38 24 Op 3 32/0.000 - CDS 40756 - 41118 477 ## COG0858 Ribosome-binding factor A 39 24 Op 4 10/0.000 - CDS 41131 - 43608 3205 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 40 24 Op 5 8/0.000 - CDS 43613 - 43897 431 ## PROTEIN SUPPORTED gi|104774212|ref|YP_619192.1| putative ribosomal protein 41 24 Op 6 22/0.000 - CDS 43924 - 44202 324 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 42 24 Op 7 32/0.000 - CDS 44233 - 45444 721 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 43 24 Op 8 4/0.000 - CDS 45464 - 45994 578 ## COG0779 Uncharacterized protein conserved in bacteria 44 24 Op 9 5/0.000 - CDS 46050 - 50258 5967 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) - Term 50300 - 50340 1.0 45 24 Op 10 7/0.000 - CDS 50399 - 52096 2414 ## COG0442 Prolyl-tRNA synthetase 46 24 Op 11 12/0.000 - CDS 52136 - 53266 1345 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 - Prom 53308 - 53367 1.5 - Term 53283 - 53322 6.2 47 24 Op 12 32/0.000 - CDS 53393 - 54190 1321 ## COG0575 CDP-diglyceride synthetase 48 24 Op 13 19/0.000 - CDS 54196 - 54927 954 ## COG0020 Undecaprenyl pyrophosphate synthase 49 24 Op 14 33/0.000 - CDS 54930 - 55487 979 ## COG0233 Ribosome recycling factor 50 24 Op 15 24/0.000 - CDS 55487 - 56212 1146 ## COG0528 Uridylate kinase - Prom 56272 - 56331 5.5 - Term 56299 - 56352 7.4 51 25 Op 1 38/0.000 - CDS 56362 - 57390 486 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts 52 25 Op 2 . - CDS 57453 - 58214 1279 ## PROTEIN SUPPORTED gi|104774224|ref|YP_619204.1| 30S ribosomal protein S2 - Prom 58304 - 58363 2.1 53 26 Tu 1 . - CDS 58378 - 59388 1029 ## COG4123 Predicted O-methyltransferase - Prom 59426 - 59485 5.0 + Prom 59363 - 59422 6.8 54 27 Tu 1 . + CDS 59459 - 60073 751 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Term 60095 - 60143 13.0 - Term 60080 - 60134 15.3 55 28 Op 1 13/0.000 - CDS 60154 - 61140 1368 ## COG0136 Aspartate-semialdehyde dehydrogenase 56 28 Op 2 . - CDS 61141 - 62481 1520 ## COG0527 Aspartokinases 57 28 Op 3 . - CDS 62474 - 63622 1233 ## COG0460 Homoserine dehydrogenase - Prom 63714 - 63773 7.4 + Prom 63485 - 63544 5.1 58 29 Tu 1 . + CDS 63762 - 64196 531 ## COG4492 ACT domain-containing protein Predicted protein(s) >gi|300496415|gb|AEAT01000096.1| GENE 1 35 - 874 854 279 aa, chain - ## HITS:1 COG:SP1266 KEGG:ns NR:ns ## COG: SP1266 COG0758 # Protein_GI_number: 15901126 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Streptococcus pneumoniae TIGR4 # 11 272 14 274 286 196 44.0 4e-50 MNKTEFLLRLKLQKGLSYLKILQVMQQMPPDEDVDHEWLNCLELPDEILYRVERAFLSDR YESAIENLQRNFKIISFFDDAYPVRLREIYRPPILLFAKGDLSLLEKEVTVIVGSRTPSQ YSGKVIENLMPVLLKKKQVIASGLAKGVDALAHQNALNFGGKTIAVVANGLNYFYPRENT LLQQQIAARGLLLSEYLPDTPPRPFRFPERNRILAGICKNVIVTEAKAHSGSLITANLAL QENRNVFAVPGAITSPLSAGTNQLISAGATPVIDKEIDL >gi|300496415|gb|AEAT01000096.1| GENE 2 965 - 1735 801 256 aa, chain - ## HITS:1 COG:BS_rnh KEGG:ns NR:ns ## COG: BS_rnh COG0164 # Protein_GI_number: 16078669 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Bacillus subtilis # 1 246 4 251 255 242 54.0 6e-64 MKINEIKDLLQADSIDPAILAELAKDDRKGVQKLLVSYQRRQEKLAKQKEEFLGRFSYEK DFWAKGQLVAGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLALYPKILQ EAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVDLPQLELIK GDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALRKYGPTPIHR LTFSPVSEMVGLKKAD >gi|300496415|gb|AEAT01000096.1| GENE 3 1725 - 2582 1173 285 aa, chain - ## HITS:1 COG:SP1155 KEGG:ns NR:ns ## COG: SP1155 COG1161 # Protein_GI_number: 15901020 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 1 277 1 274 283 256 44.0 3e-68 MTKIQWYPGHMNKARNQLEEKLNLIDVVIEVLDARIPSASRNPMISELVGDKPHLIVLNK TDLADPVMTKLWQKKLQGPRTLVMAMDAQHNTNMQALITLIKKAASEKVKKLEERGASNP IIRICLVGVPNCGKSTIINRLVGRNVTMTGDRPGVTKGQAWLKTPYGIQILDTPGILWPK FEDQDVGYKLAAFGAIKDTIFHADDVALFVIRQLRQYYPAYLAKFANCTKDKLENIGDTD LLLAMTQNNGMRDDYDRFSLFMLQRLRKGKLGRISLDRPSANNEN >gi|300496415|gb|AEAT01000096.1| GENE 4 2657 - 2887 316 76 aa, chain - ## HITS:1 COG:lin1971 KEGG:ns NR:ns ## COG: lin1971 COG4479 # Protein_GI_number: 16801037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 5 70 3 68 77 62 51.0 1e-10 MVYRQSFYQFLMTLRDPDSNGDLAQFANNAQFDSTFPRQEQDRTRLSEYLEENAAYLPSM TIFDDAYQAYEEKMQY >gi|300496415|gb|AEAT01000096.1| GENE 5 2891 - 3718 1381 275 aa, chain - ## HITS:1 COG:SP1112 KEGG:ns NR:ns ## COG: SP1112 COG1307 # Protein_GI_number: 15900979 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 271 7 274 279 190 39.0 3e-48 MTDSSVQLSPKEIEKYGITVVPLSLTIDGHTYTDGVDITRANFIQKMDEAEKLPKTSQPP VGLFVERMEELTADGSEVLGIFMAKTLSGTVDSARQAAEMVAGKITVIDCGYTDRSQGYY CIEAAKDAEAGKEMDEILAHLDQIGKNMYLEMMVPNLQNILAGGRLGKWAGRVVSALNFH VGLTMKEGSLNVPYRGRGKKFIKKFDDMLVDQLKELGDKVKYVGISYVDTRDKMEELAQR FKEVNPDLEILVQETSPIIITHAGHGAYAVMFYTE >gi|300496415|gb|AEAT01000096.1| GENE 6 3872 - 4534 1001 220 aa, chain + ## HITS:1 COG:lin1978 KEGG:ns NR:ns ## COG: lin1978 COG1272 # Protein_GI_number: 16801044 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Listeria innocua # 15 220 5 210 210 171 48.0 8e-43 MAFNPWQPVKDRPKSYYIIDNVLSSVVHGIGFGLSIAGLVILVVRAAHSHSALRVTTFAI YGACMILLYLFSTLYHSLFFTKANKVFQIFDHSSIFIAIAGSYTPYTLVTIGGAKGWVMF GIIWALTVFGILYYIFNQGKHVIGDTILYIAMGWMVILAGSQLYFSLGPTGFWLLVSGGI AYTFGCLFFSMRGLPYSHVIWHFFVLLGSILIFFSVLFYV >gi|300496415|gb|AEAT01000096.1| GENE 7 4560 - 5750 1623 396 aa, chain - ## HITS:1 COG:SP1554 KEGG:ns NR:ns ## COG: SP1554 COG0617 # Protein_GI_number: 15901397 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Streptococcus pneumoniae TIGR4 # 10 394 5 390 394 310 44.0 3e-84 MTNIRITEVFTQAMPVLEKLEEAGFEAYFVGGCVRDLLLERPIHDVDIATSAYPEEVKET FAKSIDTGIQHGTVTVLYGGSSYEITTFRTESGYQDFRRPDKVTFVQNLDEDLKRRDFTI NALAMNRQGEIIDLFDGLGDLKRRVIKAVGVAEDRFHEDALRMMRAVRFMSQLSFSLEEK TRQAIIDNHELLSKISVERIREEFVKLALGKNSRQAFKDFLATGLSEECPGLAGKKDQLS VFTDLKAGPDDEAVFWSLIAVLINLPADKISPFMRAWKNSNAMNQQVRQIVAAFDLLSRG EESDFDLFEIGQENLEAALKLAGLLGQPLSSQILLDRYNRLPIKAAGELAIDGQWLIKQG IKPSPELGQLLRKALEGVVSGQVENSQAAIAEFLAI >gi|300496415|gb|AEAT01000096.1| GENE 8 5832 - 6731 1208 299 aa, chain + ## HITS:1 COG:lin2023 KEGG:ns NR:ns ## COG: lin2023 COG1284 # Protein_GI_number: 16801089 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 10 293 4 286 288 225 43.0 9e-59 MNKPKFKWTTSDTIDILMIALGSAIYAFSVDMVSIPNKLADGGLSGFTLIIRHFWGVNPG LSTFIINIPLIFLGFKYVGKRAMIYTVWGTLCLSFFLSMWTLQSIIDQVPLHHDPFLATV TAGCLSGLGLGLVFRFNGTTGGSDIAARVLQEKYGITPSKGLLALDFLALACSLSYLDFF HVGYTMVSCFILSKVMALVTEGGTQAKGAFIISQNYRNIAKLIDLRLERGFTYINAEGGY SNEPRHMIYLVLSPREIPELKKIVKQEDPQTFIIFFDVNEALGEGFSYKTKSPSLFIRK >gi|300496415|gb|AEAT01000096.1| GENE 9 6766 - 7041 151 91 aa, chain - ## HITS:1 COG:no KEGG:bpr_I1944 NR:ns ## KEGG: bpr_I1944 # Name: not_defined # Def: EAL domain-containing protein # Organism: B.proteoclasticus # Pathway: not_defined # 1 70 553 621 828 85 51.0 5e-16 MDSKVWQTVITQSNLKLFWKDAQRRFVGVSQAFLDFYGFKSQSELIGKTDDQIGWHVNNK PFRDDELEVLQHLAPVFSKKLRDAALRIKQD >gi|300496415|gb|AEAT01000096.1| GENE 10 7069 - 7341 309 90 aa, chain - ## HITS:1 COG:no KEGG:Acfer_0802 NR:ns ## KEGG: Acfer_0802 # Name: not_defined # Def: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) # Organism: A.fermentans # Pathway: not_defined # 1 87 226 312 1451 82 42.0 5e-15 MISQGVFVPVLEGANLSYKLDLFVLNHVSKMLADRFEQGKPVVPVSINISRSDFTVIDPV KEITQTADRYQLNHQLLCIEITETAVMKSQ >gi|300496415|gb|AEAT01000096.1| GENE 11 7579 - 8157 675 192 aa, chain - ## HITS:1 COG:no KEGG:Ldb1287 NR:ns ## KEGG: Ldb1287 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 92 6 97 97 185 97.0 7e-46 MIEKDDLTNFLRKSFTYIREPFLVLEVKDNKTAIVYANKKLLDLFACKNMAELTDFAWEK LFPLTTGLSGDHAEFEHMTVADAKGQEHLLNAEVRKAEVAGRELHLCYITPININRNLLT GLLDLRSFQEVGQSRTRDWIKEGEHVSIISFDLVGIKDYNNQYGFKQGDDLLRFVGACLK DSFGDQACNPVG >gi|300496415|gb|AEAT01000096.1| GENE 12 8324 - 10096 192 590 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 353 572 132 353 398 78 28 8e-14 MKKQDKKMDSWQAMKQLLPIIGRYRLLLFISIILAAVSVIFQLYVPIIFGRAIDQIVGPG KVDFPAIGQDLVQILILVIVSAAATWLMGLINNKLTYRTVQDIREKAIRQLQLLPLSYLD QHPSGDIVSRIIADTDQLSDGLLLGFSQLFSGLITIVATLAFMLSQSVEITLLVLVLTPL SFIVARFIASRSYQMFRKQSQTRGEQTSLIEEMVSGVKVVKAFGYEKTASSRFAEINHRL QEYSQQATFYSSLTNPATRFINSLIYALVALAGAFAIMGGRLTVGGLSILLNYSNQYMKP FNDISSVITELQNAAACAGRVFELINEEPEADPVDLNKADGNLPEVKTGSVVFDHVNFSY QADKPLIKDFNLTAKPGMRVALVGPTGCGKTTTINLLMRFYDVDSGGIYLGGRNIKDMSR HALRKNFGMVLQDTWLEEGTVRDNLAYGKEDATDEEIIAAAKAAHSWGFIRRLPQGLDTP LSADSLSAGQKQLLCITRVMLLDPPMLILDEATSSIDTRTEMLIQAAFDKLMQGRTSFVV AHRLSTVVNADLILVMKDGQIIERGKHADLLARGGFYSQLYRSQFAKLPS >gi|300496415|gb|AEAT01000096.1| GENE 13 10093 - 11835 196 580 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 304 554 109 354 398 80 25 3e-14 MKYVFSYLKDYKKESVLAPLFKLLEALFDLFVPLVVARIIDYGIKERNQAYVFQQVGLLA LLALLGITASITAQWFAAKASVGLASQLRQAAFDKVEKFSFANLDQLPPSTLITRLTSDI NQVQTGFNMALRLLLRSPFIVFGSMIAAFTVNVKAALIFAVVIPLLALVVFGIMLVSIPL YRKVQKRLDEITRLSNENLAGVRVIRAFRKERAAVAKFDKKVSAMTKLNEFVGRLSAAMN PVTYVMINIAAIVLIQVGAVQVNTGAMAQGQVVALYNYLAQMIVELIKLASLIITINRAW ACGDRVGQVLATENDLTYPEAGPKVTNSQVDFKNVSFTYPAASAPAVSNLTFTIKPAATV GIIGGTGSGKSTLLNLLTRFYDCGEGEIKLGGVSIKELTQEELLDQYALVPQKAQLFAGS IRDNLLMGRLEASDEELWQALSLAQAKDVVLAKPGQLDFQLEQEGRNLSGGQKQRLTIAR ALVKQAPLLILDDSDSALDLATGARLRQALASLKDVTKILVSQRASSIMQADQILVLDDG KLMASGKHEELLANCQVYQEIYYSQFPKEKEAKEDKEGSQ >gi|300496415|gb|AEAT01000096.1| GENE 14 12220 - 13122 980 300 aa, chain + ## HITS:1 COG:BS_yvbU KEGG:ns NR:ns ## COG: BS_yvbU COG0583 # Protein_GI_number: 16080452 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 244 1 236 292 90 29.0 3e-18 MRIEHLEIFVNAAQTQSFTKTAQNMNMSQPAVSLAISSIEKQLGYQLFSRSRRKMLLTPA GRSLYNSIKSELNDYRNAVSKAKRIAMSEGQITLKVGLIGILAEQLMLPGLIRQFRRSRD TVNIEFFVESSPVLFEKLASHELDLVLSTPEAMPKFPDFTAYTIGKLKWCTLVPNDHPLA EKDLLSEKDLDGKDLVFLDLSCSSPLITLMQDRIEKNCKQSRIFFANNVVAQTMMVYTQQ GLAIQPYTGPLDDDNCEVNGLKRVPLDGKVSSDLTLFTCKDVLNEHVLDLMNWLKAQKLG >gi|300496415|gb|AEAT01000096.1| GENE 15 13193 - 14017 764 274 aa, chain - ## HITS:1 COG:no KEGG:Ldb1291 NR:ns ## KEGG: Ldb1291 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 10 274 1 265 265 535 99.0 1e-151 MRTRKKICDMNVAVVDRQNLPALLASGKIAAQADEDYQINQKTVAAYDFQMDLLLGKYRT IIYDADAGWVLLKKKTCRRLVHELRKKEPAHELTIKKQLCRQIGMSDQYVQSFGSHAYFS FFIMRHKPLDLVGLHQMKLFECLDNHGLFLTLDRQYCFSLEMPRQSGRGQQILQDCITHN AAFLHLASARAASWGCQLKPVSRKSLLNDPAYTRESRLAEIKAMDPRQILEEAEDNYLNY CSEEFLKEFRAWNWGKQDMRQLINYCNKSFNEIK >gi|300496415|gb|AEAT01000096.1| GENE 16 14263 - 14850 787 195 aa, chain + ## HITS:1 COG:SA0415 KEGG:ns NR:ns ## COG: SA0415 COG0671 # Protein_GI_number: 15926134 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Staphylococcus aureus N315 # 36 194 56 210 224 59 28.0 4e-09 MQVDLISLTISGLVLLVLILNILYSPAFNRLDRKLHKKLVRTQKNIFWKIIAFINEPKLV IVWDVLIAGLLLNEDNYRLGLWVLATLGVTDAAGFIVKHLVKRSRPHAHLSEEEGYSFPS GHVLGATTMCLILYALLRREFDQLFAVILLIYWLFVVISRLNLRAHYPSDVLGAVALSVF CFTVVQTIYAALFLK >gi|300496415|gb|AEAT01000096.1| GENE 17 14946 - 15782 1178 278 aa, chain - ## HITS:1 COG:SP0742 KEGG:ns NR:ns ## COG: SP0742 COG1307 # Protein_GI_number: 15900637 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 5 276 4 278 281 197 38.0 2e-50 MENVRLIVDSSANTLTDPSRGLEVVPLTLTIGQENWLDDEQLDMGAFLNKMEASQEAGKT AAPSIQRWLDSLEGCEKAVIVTITSGLSGTYSSALQARDIYLETHPHAQIVVVDSRSAGP ELEVILEGIESILKDDKLRFADLEARIAEYRTKTHLLFVLQSLRNLSLNGRVSPAVAKIA GMLKINLIGTASVDGDLQPLTKARGMKKALRELVKQMKEEKYQGGRVVIDHCENEADAEK LKELLLAEYPDAEITIRPMQGLCSFYAERGGLMVGFHN >gi|300496415|gb|AEAT01000096.1| GENE 18 16089 - 17366 1889 425 aa, chain + ## HITS:1 COG:L0008 KEGG:ns NR:ns ## COG: L0008 COG0148 # Protein_GI_number: 15672258 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Lactococcus lactis # 4 423 3 422 422 507 62.0 1e-143 MTKVVIENVHAREIFDSRGNPTVEVEVTLSNGVVGRAEVPSGASTGENEAVELRDGGSRL GGKGVMKAVNNVNTAINNELQGADPFNQPAIDKAMIELDGTPNKGKLGANAILGASMATA VAAAKATHQPLYRYLGGTDLSMPQTFHNVINGGEHADNGIDIQEFMITPVKKTSFRDGFE KIVNTYHTLKKVLEEKGYETGLGDEGGFAPNMKDSEEALKALHEAIERAGYVPGEDIAIA CDCAASYYYNKEDGKYHLEGKVLDGDQLAEYYDKLLAEFPELISMEDPYDENDTEGMVKF TQSHKDRLQIVLDDFICTNPRLLEKAIKEGAGNASLIKLNQIGTVTETLETIRISRKHGY NTMISHRSGETGDTFIADFAVATNGGQLKTGAPARSERVEKYNQLLRIEEQLGDGERLDF FPAQD >gi|300496415|gb|AEAT01000096.1| GENE 19 17623 - 18231 640 202 aa, chain - ## HITS:1 COG:no KEGG:Ldb1297 NR:ns ## KEGG: Ldb1297 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 202 1 202 202 339 99.0 5e-92 MQKRTDKGSGRRTGFLQKLAALLIAVVFLAGGIMIGQHLPKKSREQVTVATVSAKLKAIG ELATEQYTYTGIYKLSNGQIPFITKKGFTMVYTANFKAGVKVKDIKVQVNQDQVTVTLPQ SQLLDKKIDPSSIKFYDQSYALFNWNQKEDITKAEQAALKKATGVAKKSGLLARSQKNAK ELIRQLLQGTLDGRKLVIKTEE >gi|300496415|gb|AEAT01000096.1| GENE 20 18740 - 19480 294 246 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 200 1 201 223 117 35 1e-25 MNKIIEVKHLKKNYGDKEVLKDINAVIEKGKVITVIGPSGSGKSTFLRCLNLLEKPTSGQ VIFEGTELTDLKEEELDQLRQKMGMVFQSFNLFPNMSVIENVKLAPMKVKGMSDQEAGDL AHELLAKVGLDDFADHSPASLSGGQQQRVAIARALAMQPDMMLFDEPTSALDPEMVGEVL KTMQDLAQTGMTMVVVTHEMGFARKVADEVWFMADGYLLEQGSPDQVFDHPQSDRAKDFL AKILEA >gi|300496415|gb|AEAT01000096.1| GENE 21 19526 - 21007 2380 493 aa, chain + ## HITS:1 COG:lin2352_2 KEGG:ns NR:ns ## COG: lin2352_2 COG0765 # Protein_GI_number: 16801415 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 282 486 7 211 215 213 53.0 9e-55 MTALLLLAGLFTAAIPAVDAASSKKVTSSTVMKKIKKSGKLVVGMSADYPPLEFTKNVNG RNKYVGVDVELAKQIAKDLGVKLEIKNMDFDSLLVALETGKIDVIISGMTPTAERKKSID FSKIYYAEKSDYFVISKTNKAKYTSTASFKGKTVGAQTGSLQYTSLKKNAAKSGIKVKGL AKISNLLMALKSGKVDAVLLGELNAKTYVTNDTSLSLVKSSLSQAQMGNAVGVAKGQGDL VKAINKTINNCQKQDLFNKKYIPAAAKAMKQASSKTNNSMSKYASYFATGLGYTMIITIC SITIGLVLGVIFALMRLSKNKLLHAIAVCYIEFLRGTPQMVQIMFVYFGVGMLIKNMPAL AAGIIAIGLNSGAYVAEDIRSGINSVAKGQTEAARSLGLSQSKTYRYVVFPQALKNIWPA LGNEFITLTKDSSLVSVIGVGELMYETGLVQTATYRGVMPLFITMCIYFVVTFILTRLLN YFERRMNLTSSRA >gi|300496415|gb|AEAT01000096.1| GENE 22 21055 - 21909 1105 284 aa, chain - ## HITS:1 COG:CAC2394 KEGG:ns NR:ns ## COG: CAC2394 COG0583 # Protein_GI_number: 15895660 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 1 282 1 284 286 209 38.0 4e-54 MNFKQLNYFLVVAEEGQITSAAKRLFVGQPALSYQLKQLEEELGAKLFIRQPYGIELTEA GKKLRDYAGQILTLAKNVQTEITELDRGGRGRVKLGSVSSSIGELPSAKLTAFARQHPGV SFDIYEDNTFGILDKLQGNLLDLAIVRTPYNRVNLNFVDISDEPMTAVTCQDFFPGKEKV GLQALAGQPLVIYRRFEDMFKEAFAEKGLTPNFVVKCDDSRTAIRWSDSGLGIALVPESI AETYAKGHIYPIDSAKWRTRLQLVWRKDRVVTPLMRQIIALYAK >gi|300496415|gb|AEAT01000096.1| GENE 23 22087 - 24345 2649 752 aa, chain + ## HITS:1 COG:Ta1045 KEGG:ns NR:ns ## COG: Ta1045 COG0474 # Protein_GI_number: 16082076 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Thermoplasma acidophilum # 5 744 21 770 780 374 31.0 1e-103 MKVKGLTQAEADLRLKKDGLNQVPEPEFSFWKEFAGKLWNLSAWILEAALLLECALGKWI QSLFVLLMLLFAAYNGATQKKKSRKVLSSISQQLTPVVAVLRDDRWQKIDSKYLVVGDIV NLQRGDILAADIDLLDGNLTLDESSITGEAKNVHKKAGATAFAGTTVMDGEALGRVSATG TNSRSGQTINLINRSAAPGHLQQLLTKIIYYLCLLDGVLTVILLIAAVIRGENILEMLPF LAMMFIASIPVAMPSTFALSNSFEATRLSKEGVLTSDLTGIQDAANLNLLLLDKTGTITE NKTAVASFANFSKLSDEEVLALTSLAIDQRNQSVIDLALMDFLQEKKIPVKEAEAFTPFT SSQGYSEGRGEGHDVKLGSVKQFSKIDPAISEQMAAVDLSLGRSVGILLDDRLAGIFITK DKVRADSKAALAELVKRGIKPVMLTGDNQKTAASVAEEVGLTGKVISISDFKEGVKAEDL AGIADVLPEDKLDMVKYFQKAGYIVGMTGDGVNDSPALKQAEVGIAVSNAADVAKKSSKM VLLDEGLSPIVKILDAGHRVYQRMTTWSLTKLTRTAELTMLLTFSYLIFGYLPMALNAMV IYTIMNNMVTMMIGTDKTHITYKPENWDMGKLAKIAFSLAGAWTIIGFAFVSALTKAGVN HDQVGTMVYVFLVMSAMMIVLITRTKRFFWQSAPSKPVASVQIADILLTCLLALLGIAMP AIGIKELLTPLAVAFLAAILIDLVYQPVMKNK >gi|300496415|gb|AEAT01000096.1| GENE 24 24628 - 25761 1738 377 aa, chain - ## HITS:1 COG:CAC1677 KEGG:ns NR:ns ## COG: CAC1677 COG0628 # Protein_GI_number: 15894954 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Clostridium acetobutylicum # 182 363 163 339 341 102 35.0 1e-21 MNKFWNHIDQKYFKIALYCLGTVFAGLFILLLAYESTGFWVRVGKILAAIAQPLTYGLVL TYLLLPLTNFFDRKFSKGSSRGAVATASRSAAVALTLLLLLLVILLAATAVFVTFSKQLS HFSLGSLESLYDQLKAQYSSFINEILAYLQKQGWSTSGLVSYMQKGVGRVTGFLSDFFFG VIFAIYFLYDGQRIAAYWKRNLGTLLNKKVIKGIKLFLADADRAFSGYIRGQIIDAFIVG LLVSLAMLIAKVPYGLLIGLVTGLGNLIPYFGPILGYGMVILACTLSQNMTALIVGMIIL LLIQAIDGNILNPKLLSSAIHIHPLYVIACVIAGGAMGGFVGMLIAVPIGALLKTEFERL IAYRQKQLEKSKEASEE >gi|300496415|gb|AEAT01000096.1| GENE 25 25878 - 26903 1476 341 aa, chain - ## HITS:1 COG:CAC1479 KEGG:ns NR:ns ## COG: CAC1479 COG0115 # Protein_GI_number: 15894758 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Clostridium acetobutylicum # 1 337 1 337 341 432 57.0 1e-121 MAKKDLDWANIGFGYHQTDKRYVDYFHDGAWEGGKLTDDPNVVLNECAETLQYAQQVFEG MKAYTWKDGSVVVFRPDQNAERMYNSAKRIEMQPYPKDKFVEAIDQVVKGNVDWVPPYGS GATLYLRPYEIGTTPIIGVAPATDYMFRIFATPVGPYYKGGATPVAVQVAQYDRAAPRGT GNVKAALNYAMSLKATVAAHQAGFAENMYLDPATQTYIEETGGSNIIFIDQNNHLVVPKS NSILPSITRRSIVYLAEHYLNLTVEERQVRFDEVPSFKECALVGTAAVLSPVGRIVNGDQ VIDLPSGMDKPGKFMEELYNTLTGIQNGEVEAPEGWIHHVM >gi|300496415|gb|AEAT01000096.1| GENE 26 27106 - 27993 1409 295 aa, chain - ## HITS:1 COG:PH0896 KEGG:ns NR:ns ## COG: PH0896 COG1230 # Protein_GI_number: 14590752 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Pyrococcus horikoshii # 15 289 17 289 295 216 42.0 3e-56 MKDQASKRYLWVTVFNVIITAAEIAGGIISGSLALLSDALHNLSDVVSIVVAFAANLIAK RSKDQHKTFGYKRAETLAAYTNGLFLLAISIYLFISAIKRFSKPEPIEGGVMFIVSLIGL AGNLISMLILGKGSKENLNARALFLNMMSDTLSSVAVVVGSLLIYYQNWTLVDPVLTMAA AIFLLKEAFEVTRDSANVLMEANPDLDLEAIEEAGLAFKEVRQLHHLHVWRYSDDTIMLD AHIVVDSGLTAKRIEELDEEIAACLKEKFAINHVTLQAECSRGLDEDLLSTNKEN >gi|300496415|gb|AEAT01000096.1| GENE 27 28105 - 28407 435 100 aa, chain + ## HITS:1 COG:MJ1325 KEGG:ns NR:ns ## COG: MJ1325 COG0640 # Protein_GI_number: 15669515 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Methanococcus jannaschii # 5 91 2 88 89 58 39.0 2e-09 MTHEELIDQAARLFKVLGNSLRIHILFYLRKHGESPVSAIVGHLGVSQPVISKQLGILKK YDFVQKRKAGTFVYYSINDQDIVQIIDAMTEHLDHLDRLQ >gi|300496415|gb|AEAT01000096.1| GENE 28 28486 - 29013 903 175 aa, chain - ## HITS:1 COG:FN1483 KEGG:ns NR:ns ## COG: FN1483 COG0503 # Protein_GI_number: 19704815 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Fusobacterium nucleatum # 3 172 1 170 170 214 59.0 9e-56 MSIDFKKYIASVKDFPNEGIIFRDITPILQDGEAFAAATHEIAEYAKSRQADVIVGPEAR GFLVGTPVAIELGIGFVPARKPHKLPREVEAAAYDLEYGSNVLEMHKDAIKPGQRVVICD DLMATAGTLHATKELIERLGGKVVGAAFYIELTDLKGREKFPDVDIFSLVKYNGA >gi|300496415|gb|AEAT01000096.1| GENE 29 29003 - 31279 2393 758 aa, chain - ## HITS:1 COG:L0259_1 KEGG:ns NR:ns ## COG: L0259_1 COG0608 # Protein_GI_number: 15672614 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Lactococcus lactis # 15 543 22 554 558 385 39.0 1e-106 MKWQERTAAPLASDLVEEFQLSPLTAKLFSLRGIDNEEKIDYWLHASENDLADPFLMHDM DKAVGRINQALDEGEKITIYGDYDADGITATAIMTEILTIMGADVHYFIPDRFKDGYGPS LDRYKDIVADGTKLIITVDNGVTGIEEVAYAQSHGVDVIVTDHHTFKEEKPDAYALVHCN YPGQAYPFDDYCGAGVAYTIARAVLEDTASEFLELAMIGTIGDMVKVSGEGHVIVKRGLE MLNESSRPGLEALIRNAGLTPGMIDEEDVGFSIAPRLNACGRLADASLAVRLLLAESPGE AQELADQIEKLNNERKDLTQATMQAAEAQIKSRGYQKEATLTLYDPAWHEGVMGLVANKI VEKYHKPTLMLTKNEAGLVKGSGRSSQGFNLFNALKPFEGKSITQFGGHDFACGLSTTEE NLNQLRRDFNQSYKAGEKAPEKVQEYDGTISPLDVDLTSVYDLAQAGPFGTDNPQPVFLL DKPQISNFRPMRKGCSFMVGPVRAVDFDHGLNQTVLPYLQQMLVKLASNTFKGKTNVQFR IVDLHYGQSLYAPSARIVDFRGQENLLGFADKYLLFDEKNLSQAMNHFGITKEQISLAKD NEDLSQQVVSVLDVPANEAQLNFVLAKPYRQLYLRFQLDQLPGETLPSRGNFGLVWQYFL AHPGLKPNDYMQAAGQLGMDPDSIMFILRVFFTLDFVKMEEDRLLPKPSPTKKSLDDSAH YRSVKAEYAFANKLRTISSDELIRYASGLANGGLQNVN >gi|300496415|gb|AEAT01000096.1| GENE 30 31276 - 31977 911 233 aa, chain - ## HITS:1 COG:L125196 KEGG:ns NR:ns ## COG: L125196 COG3764 # Protein_GI_number: 15673095 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Lactococcus lactis # 18 205 54 248 287 133 39.0 3e-31 MTSKASKNTKGHPVRRIILRLVAVILFLLGLALVFNQQISAFLVKQNQTAALKGLTRDQV VQNQKKKGMYDFKKVKSIDFAQTTRSRVKNTAGAIGAISIPSVKLYLPVMQGLSDAALST GGGTMRADQKMGKGNYPLAGHYMTDQWALFSPLERVKLGSMVYLTDLKKVYAYKIYYKKV VDPSAVWLVANTKKEIVTLITCADGGVNRWSLRGKLTAVKPASKQNLEMFKLR >gi|300496415|gb|AEAT01000096.1| GENE 31 31958 - 33796 2678 612 aa, chain - ## HITS:1 COG:BH1342 KEGG:ns NR:ns ## COG: BH1342 COG0481 # Protein_GI_number: 15613905 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Bacillus halodurans # 1 606 1 606 609 813 66.0 0 MDLEKLKDYQKHIRNFSIVAHVDHGKSTIADRILELTDTVSKRQLKNQMLDDMPLERQRG ITIKMNSVQVKYHANDGEDYIFHLIDTPGHVDFSYEVSRSLAACEGAVLVVDASQGVQAQ TLSNTYLALENDLEILPVLNKIDLPSADPDMAKSEIGDMLGLDASDAVEVSGKTGAGIPE LLERIVTDIPAPTGDLTKPLKALIFDSKYDDYRGVVMSVRIEEGMVKPGDEIMIMNTGKK YEVTEVGVSSPHPVKEDILIAGDVGYITANIKSVRETRVGDTITSAENPTAEALPGYRQI PPMVYSGMYPTDNRDYDDLKEALQKLQLNDASLEFEPETSQALGFGFRCGFLGLLHMDVV QERLEQEFDVDLIMTAPSVDYHAIMPTGEVKLIDNPADLPDAGEYKELQEPYVKAEIMAP NDFVGAVMQLCEGKRGEFQTMDYLDKYRVNVIYEMPLAEIIYDFFDQLKSSTKGYASLDY EIIGYKATNLVKIDILLNKEPIDALSFIAHREEARDRAVQMCSLLKKLIPRQNFQVDIQG AIGSKIISRATIKPYRKDVTWKIHTGDPDRRSKLLEKQKRGKKRMKSVGRVEVPQDAFMA VLRMNDDDIKGK >gi|300496415|gb|AEAT01000096.1| GENE 32 33918 - 35057 1786 379 aa, chain - ## HITS:1 COG:SPy1759 KEGG:ns NR:ns ## COG: SPy1759 COG0484 # Protein_GI_number: 15675605 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Streptococcus pyogenes M1 GAS # 4 378 3 375 378 351 55.0 1e-96 MAANRDYYDVLGVSRDASDAEISKAYRKLAKKYHPDLNHEAGAEEKYKEVNEAYEVLHDP QKRQQYDQFGQAGMNGQGGFGGQYGGQGFGGADFGDFGDIFNSFFGGGARQQVDPTAPQR GADLDYTMTIDFMDAIKGKTSEISYSRSTTCEVCKGSGAEKGTHPITCDKCGGSGMMTIT QRSVLGMIQRQTTCDKCGGSGVIIQHPCQNCHGKGVKTQKQTLQVKVPAGIDNGQQIRLA GQGEAGKNGGPYGDLYIVFRVRPSKDFTRRGQTIYTTVPISFAQATLGDEINVKTVYGDT KLKIPAGTQPNQKFTLKEKGVPSLRGGSTGDQVTTVEIVIPKSINEAQRKALLEFVKASG GSIAPQEKGFFERLKEKLS >gi|300496415|gb|AEAT01000096.1| GENE 33 35140 - 36984 2826 614 aa, chain - ## HITS:1 COG:BS_dnaK KEGG:ns NR:ns ## COG: BS_dnaK COG0443 # Protein_GI_number: 16079601 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Bacillus subtilis # 1 614 1 608 611 793 73.0 0 MSKVIGIDLGTTNSAVAVLEGKEPKIITNPEGARTTPSVVAFKDGEIQVGEVAKRQAITN PNTIVSIKRHMGESDYKVKVGDKAYTPQEISAMILQYIKKFSEDYLGEPVTDAVITVPAY FNDAQRQATKDAGKIAGLNVQRIINEPTASALAYGLDKDEDDETVLVYDLGGGTFDVSVL QLGDGVFQVLSTNGDTHLGGDDFDNKIIDWLVDGFKQENGVDLSKDKMAMQRLKDAAEKA KKDLSGVSSTHISLPFISAGEAGPLHLEADLTRAKFNELTDDLVQRTKIPFDNALRDAGL SVGDIDKVILNGGSTRIPAVQEAVKQWAGKEPDHSINPDEAVALGAAIQGGVISGDVKDI VLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQIFSTAADNQPAVDIHVLQGERPMAA DNKTLGRFELTDIPAAPRGVPQIQVTFDIDKNGIVNVSAKDMGTGKEQKITIQSASGLSD EEIERMKKEAEEHADEDAKKKEEVDLRNEVDGLIFQTEKTLKEVDGKLADSDVQPVKDAL EDLKKAQKDNNLDEMKEKKDALSKVAQDLAVKLYQQNAQNQQGQGGQAGPTDDGSNGANG DTVDGDFTKVDPDK >gi|300496415|gb|AEAT01000096.1| GENE 34 37044 - 37661 718 205 aa, chain - ## HITS:1 COG:SP0516 KEGG:ns NR:ns ## COG: SP0516 COG0576 # Protein_GI_number: 15900430 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Streptococcus pneumoniae TIGR4 # 56 203 29 172 174 110 50.0 2e-24 MSKEEFPSEKDLPQEDQEKQAKSAEADKAGVKEDKKAKDNKEEAAKPADAELDQLKAEVA ALTQKNKDLEDKYLRSEAEIQNAQRRYSKERANLVKYESQRLGKDILASVDNLERALQVK ADDEASSQLKKGIEMTLEGLVRALKDNGIEEIKADGEKFDPTLHQAVQSVPAENDDQKGH VVQVLQKGYVYKDRTLRPAMVVVAQ >gi|300496415|gb|AEAT01000096.1| GENE 35 37673 - 38752 1470 359 aa, chain - ## HITS:1 COG:lin1512 KEGG:ns NR:ns ## COG: lin1512 COG1420 # Protein_GI_number: 16800580 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Listeria innocua # 13 355 1 340 345 234 38.0 2e-61 MKVVSAKSEGDVMLTERQELILKTIIQDFTKTHEPVGSKTVMNQLAIKVSSATIRNEMAV LEEHGLIEKTHSSSGRVPSTEGYRYYLDNLVQPLQLPEEMYNQIGYQFDQPFNQVDEIVK EAARILSDLTDYTAFAEGPEAKNVSITGFRIVPLAPRQVMAILVTSDGSVKNQLYTLPRH ISGDEIEQAVRLINDQLVGKNLSEINKQTFEQLSSSQIVGKNAPEFLELLEAVIKDAASE QMYVDGQLNLLNNTENSDLKAIKSLYELINSSSLAGELIDLSDSPSHYPVHVRLGAELEN DLLKDFSLVTAEYSVGHYGRGTIALLGPRNMPYSEMIGLMEYFRQELARKLLDYYGRFK >gi|300496415|gb|AEAT01000096.1| GENE 36 38853 - 39794 548 313 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1 311 1 316 317 215 39 4e-55 MKVINLSYPFKKELTAGKVVLALGFFDGVHIGHQKLIKEARIIAVEKDLPLMVLTFDRHP KEVYAGVKDFEYLNTPEEKAYEMSKIGVDYLVILKFTPGFSHLAPQAFVDEIIMGLKADT VVAGFDYSYGPKDVANMENLPAFAKGRFDIKVVPKQIFAGKKIGSTEIRQAVKSGNLRLA TELLGHPYLTSGKVVHGFRNGHKLGFPTANLELAWPKVLPKIGVYATMTQVGDSWHQSMT SVGYNVTFNDEKKIYIESNIFDFDQDIYGQQITIAWYKYLRGEEKFADMAALSEQLKLDQ VASENYFSSLIEQ >gi|300496415|gb|AEAT01000096.1| GENE 37 39809 - 40705 1087 298 aa, chain - ## HITS:1 COG:SP1212 KEGG:ns NR:ns ## COG: SP1212 COG0130 # Protein_GI_number: 15901075 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Streptococcus pneumoniae TIGR4 # 3 290 2 287 292 235 43.0 6e-62 MFNGIIVIDKAAGMTSGDVVYKLRRLLKQKKIGHAGTLDPEVTGVLPIALGQATKLIELM HERPKAYVGEGMLGLATDSYDLEGKILAERALSQPVSDQAIKAAMEKLTGEIVQQPPIYS AVRVNGKRLYEYAREGIPVERPKRTVQVFRYDLTAPSQFDPEKGRQTFTYEVECSKGTYV RSLVNDLGEELGLPAVMTKLRRTASSGYKLQDAVTLEELADNLDHAEDYIQPIDSFFADY QQVDLDAALWQQVKNGAWIKLPLDADKVALRYNKTVKAIYRAKGQGLYCPDLMLLSNE >gi|300496415|gb|AEAT01000096.1| GENE 38 40756 - 41118 477 120 aa, chain - ## HITS:1 COG:SPy1719 KEGG:ns NR:ns ## COG: SPy1719 COG0858 # Protein_GI_number: 15675570 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Streptococcus pyogenes M1 GAS # 3 114 6 117 118 104 48.0 4e-23 MKHRKGRVEGEILRELTKIIRKNIRDPRVSNVTFTAVECSNDFSYATVYYSLLTEDEQAQ KEAEAGLEKAKGTMRHLLGQSLTMYKVPELIFKRDQSVIYGSKIDRLLADLKKQEQDRQN >gi|300496415|gb|AEAT01000096.1| GENE 39 41131 - 43608 3205 825 aa, chain - ## HITS:1 COG:lin1362 KEGG:ns NR:ns ## COG: lin1362 COG0532 # Protein_GI_number: 16800430 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Listeria innocua # 86 823 54 780 782 695 52.0 0 MTKKQENETSKELGMDNKKTSGKSGKLKISVSAIRKGEKKTEGKRSNTRRRANNHSNDHS KRRRPAAQDLLKDLKQKQRADEVHLDQESKAAKQEYKKSLNKAAASESKPVVKKVESAEK PAETAAEAPKVRGPKILKPSPARLKQNQANSEKPAAKPSSSRRPSSRPSLTEAPMPENKE GRRRTSGKPGRKGQNSYANQGRGANSDRSQQRKRKNKKHQSAPQVKKQVTQRKDRPLPES FEYEVGMNAQDLGKILHREPAEIVKKLFMLGIMINQNQSLDKGTIELLAADYGIEAVEKV HEDISDIDNIFAQEMEESKNSENQVVRPPVVTIMGHVDHGKTTLLDRLRHTRVSEHEAGG ITQNIGAYQVRIDDRLITFLDTPGHAAFSSMRARGAEITDIVVLVVAADDGVMPQTIEAI DHAKSAGVPIIVAINKMDRPGANPAHVTEQLMQYELIPENYGGSTIFVNISAKTGMGIDE LLENIILEADMLELKADPKQKAIGTVVEARLSRGKGPVADVLIQQGTLRVGDPIVVGDTF GRVRTMTNDKGHQVKKATPSMPVEITGLNDVPESADKLVVFADEKTARAVGEARAQQSLQ KQRENVQHVTLDNLFDTMKRESMKSVDIVLKADVQGSAEALAQSFQKIDVEGVRVNIIHS GVGAINESDVTLASASNALIIGFNVRPTATAKSQAAQEGVDIRLYSIIYKAIDDVKAAMQ GMLEPTYEEKVIGNLTVRETWKVSKIGTIAGAFVDNGYVTRESGIRVIRDGVVKYDGKVA SLRRFKDDVKEVKAGFDCGLTIENFNDIKEGDELEAYEMQEVKPG >gi|300496415|gb|AEAT01000096.1| GENE 40 43613 - 43897 431 94 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104774212|ref|YP_619192.1| putative ribosomal protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 94 1 94 94 170 93 2e-41 LLGLATRAGKTVSGTDIVLAKLKKGKLKCIIIANNLSENSRGEIEAALKAHPTPLVDVFT EAELSQAVGKKRKVLALTDRGFAKTLLDKIKEGV >gi|300496415|gb|AEAT01000096.1| GENE 41 43924 - 44202 324 92 aa, chain - ## HITS:1 COG:L175136 KEGG:ns NR:ns ## COG: L175136 COG2740 # Protein_GI_number: 15672747 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Lactococcus lactis # 1 87 8 94 108 83 50.0 9e-17 MRKDLLTDTMQPKKDLVRIVVDKEKNVSVDPSGKKPGRGAYVSLEPEKIAAARKSKVLER SLGVKVADEFYDELFAYVDHQKARKELFGDQK >gi|300496415|gb|AEAT01000096.1| GENE 42 44233 - 45444 721 403 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 366 9 362 537 282 45 4e-75 MSKEMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMA LKTVVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKDFGRTAAATAKQVVMQRLRE AENAHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKRDTIPGEHYNPQDRVR VLVTKVGADGKGAQIRVSRTAPDVVKRLFEQEVPEIFDGTVEIISIAREAGERTKIAVKS NDPNIDPVGTCVGPRGSRVQNVVNELGGENIDIVQYEEDPSDYIANALNPAEVIAVQFED EDDERKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDESEVEDETEV AEDQDLQQTEAEEADDQAEAEATEADENTEAEDAEDLDLDDEE >gi|300496415|gb|AEAT01000096.1| GENE 43 45464 - 45994 578 176 aa, chain - ## HITS:1 COG:BS_ylxS KEGG:ns NR:ns ## COG: BS_ylxS COG0779 # Protein_GI_number: 16078722 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 26 176 9 156 156 130 45.0 2e-30 MVNSSEQRCSLFLLRRKILPKSLTPIQEAIEPVIIGHDCELVDLEYVKEKSQDYLRIYVD KQPNGIDIETIAELSELVGEKLDSMQPDPLPDPYILELSSPGLERPIKKEQDWEKAKGQY IHVGLYQKLEGEKVFEGHLLDLDDQEIKLEIKIKTRRKQLTIPRKQIASARFAIEF >gi|300496415|gb|AEAT01000096.1| GENE 44 46050 - 50258 5967 1402 aa, chain - ## HITS:1 COG:lin1357 KEGG:ns NR:ns ## COG: lin1357 COG2176 # Protein_GI_number: 16800425 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Listeria innocua # 4 1402 55 1444 1444 1359 48.0 0 MGYPRFFTTPLRFESYNALNQAIKHEFNDFVDTRLIVETADGQQQYLPDYWQYAVENSEV LSANPAAQNFLVGQAPHEDSGRWVIPINGQLFDKMLEQRLLDSFSLELRNYGFFNVKLLM EVTDQGGQSDFESLAQLVEAHEKNMQKAFQQAPAKPKPAPRPSYQGRRGKKTSFGPGAIS DKAEITQLKDLSEDQRSAVVEGHVFKAEMQELRSGSFIFNGEMTDYTGSISFKKFVRDSD KEEIEYLKGIKPGVWIRMQGSLKDDQYAHDLIFNIYSMELTEHVGRQEAYQGEEKHVELH VHTNMSQLDATSDVADIIKTAKKFGQPAVAITDHAGLQALPNAFEAGKKTGMKVIMGLEA NMVEDHGLLVLNPASMKYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDRFDKF INPHHPLSETTINLTSITDEMVQAADDEAVVIKEFMDFYGNDPLCGHNVQFDVGFVDAAL KRCGYPEISQPVVDTLEVSRLLHPEQSRHTLDSLCRKYNVALEHHHRANQDAEATGYLMF KLLDAFNDKYQEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSLAGIKY NFKGLRTPKSELRRLHAGLLYGSACSQGEVFIAMMQKGYKEAKKKAEFYDFLEIQPPSNY SSLIADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDKHEAIYRDVLLAAQRGN PNRNKQHPDLHFYTTQEMLDEFSFMGEDIAKEVVISNPNKINAMIDEGVQPVQDESFPPK IPHTAERVRNLTYDKAHELYGDPLPDNIQARLDRELDAIIGNGYGVVYLISQMLVAKSVK DGYLVGSRGSVGSSLVATMMGITEINPMPPHYRCPKCKQSEFFENGEYASGFDLPDKKCP DCQVMMVKDGQNIPFETFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPNHSFKAGTV GTLADKKAIGYAKHYQDEHPEIKMNNAEVDRLAIGVTGVKATTGQHPAGIVVLPDDKDIY ELTPLQYPSDDISKEWKTTHFDFHQIHDNLLKFDILGHQDPTMIRMLQDLSGIDPLTIPT DDPKVMSLFSSPEALGVTPEQINSKTGTLGLPEFGTPFVRGMLEETKPSTFAELLQISGL SHGTDVWLGNAEELINNGTCKLKSVIGCRDNIMTDLIHWGVKEEVAFSTMETVRKGKGIS DENMAVLKENKNIPDWYIPSCLKIKYMFPKAHAAAYILMALRVAWFKVYYPEIYYAAYFS VRADKVDLEAMSRGKNTVVALINRIKEKGTAATKLEKDLQTYMELVNEAIERGINFKMVD INESEATTYKIVDKHTILAPFNAVDGLGDSAAKQIVAARSEAPFLSKEDLQVRGKVSQKI MDFFENNNVLEGMPDQNQLSLF >gi|300496415|gb|AEAT01000096.1| GENE 45 50399 - 52096 2414 565 aa, chain - ## HITS:1 COG:BS_proS KEGG:ns NR:ns ## COG: BS_proS COG0442 # Protein_GI_number: 16078720 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Bacillus subtilis # 1 563 1 564 564 572 52.0 1e-163 MRQSIFFMPTLKETPADAVAKSHQVMLRGGYIRQVTAGVYSYLPLGYKVLRKTEKIIEEE MANAGVVEMIMPHMLPASMWEESGRLPKYGPEMFRLKDRHGREMLLGPTHEETFTDVVAK SLKSYKQMPLHLYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAASQEQLDKQFDDEKAA YLKIFKRTGVEVRPVIADSGTMGGKNSIEFQAPAAVGEDTIATNASGTYAANLEMAVSVD TFKQEPEELKAMEKVATPGCDSIDKLAEFLQVPATRIVKSVLYIVDEKKKVLVLIRADKE VNEVKLTHLLDCDSLRVAETSDLEELTGAGKGGVGPVNADWADEIVADETVKGLYNVVVG AGESDAQFINANLDRDFKADRFADLRVANEGEPDPVDHEPLKFTTSIEVGHIFKLGTYYT ETMGAKFLDQNGKSQPVIMGSYGIGVTRLLSAVVEQHATENGVAWPKEITPFGIHIIQMK MKDEIQSKLAEDLEAKFAKYDVLYDDRNERPGVKFNDADLVGAPIRITVGRDAADGIVEV KRPGDDQAQKLAVTDLEDFIASELD >gi|300496415|gb|AEAT01000096.1| GENE 46 52136 - 53266 1345 376 aa, chain - ## HITS:1 COG:SPy1963 KEGG:ns NR:ns ## COG: SPy1963 COG0750 # Protein_GI_number: 15675761 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Streptococcus pyogenes M1 GAS # 1 374 40 418 419 274 42.0 2e-73 MGPKLVQWRPGQTTYTIRWLPLGGYVRLAGPDEQSEIDPGTAVVLELNEAGIVTRIDASE SDLPIEGRPLRVTKADLVDNLTIAGYENADESQLVTYKVDHDATMIDDTGTELQIAPRDV QLPAAKPWKKLATSFAGPFMNVVLGFVALMIYSFASVGPATTTVGQVAANSPAQHVLQKG DQIVAINGRKISTFDQVSQAIDSSKGKTLTVKVKRQGSEKSVQLTPKYSKKTKSYLVGIV AKADNSFSAKLKRGWDLSWQVTGMIFQALGNLFKHFSLNKLSGPVGIYSETSKATSMGLI YMLAFVGMLSINLGIVNLIPIPGLDGGKLLLELIELLRGKPIPEEHETVVDLIGVVFLLI LIIAVTGNDIYRYFIK >gi|300496415|gb|AEAT01000096.1| GENE 47 53393 - 54190 1321 265 aa, chain - ## HITS:1 COG:lin1353 KEGG:ns NR:ns ## COG: lin1353 COG0575 # Protein_GI_number: 16800421 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Listeria innocua # 1 262 1 259 262 215 48.0 6e-56 MKQRVITAVVALLIFIPVLVAGGMWIDWLAAFLAAVGISEVFLMKKQILVSVDFTLAALA TLTWTVPNSFFGFLPKNWSKWGVFYALVMMLLTWTVLSKNKTTFDDIGVYVLSSLYIGTG FHYLAAIRNSDPVHGLWRLLFAFVIVWTTDTAAYMVGRKFGKHKLWPVISPNKTWEGSIG AVIIAVIVTAIYVNLAPVGGDKTSLINASFFLSIAGQMGDLVESAYKRFYGVKDSGKILP GHGGILDRFDSTLFVLPIVALIFGI >gi|300496415|gb|AEAT01000096.1| GENE 48 54196 - 54927 954 243 aa, chain - ## HITS:1 COG:lin1352 KEGG:ns NR:ns ## COG: lin1352 COG0020 # Protein_GI_number: 16800420 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Listeria innocua # 9 238 26 252 252 272 57.0 3e-73 MDKNKQLNHLAIIMDGNGRWAKKRKMPRFMGHKAGMDNVEKIALAADELGIKVLTLYAFS TENWARPKDEVNYLMNLPVKFFDKFMPRLQAHNVKVNIMGYLDALPESTREVVERAMAET AANTGLVLNFAFNYGSRKEIVSAVQALAKEAASGEITPEEITEDMVSAKLMTAKFAPYSD PDLLIRTSGEQRISNFLLWQIAYSELAFTDKAWPDFDENDLAEMVKIYQHRDRRFGKLDE TDS >gi|300496415|gb|AEAT01000096.1| GENE 49 54930 - 55487 979 185 aa, chain - ## HITS:1 COG:L0367 KEGG:ns NR:ns ## COG: L0367 COG0233 # Protein_GI_number: 15673991 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Lactococcus lactis # 1 182 1 182 185 184 58.0 6e-47 MNNETIAKAKSNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQLAGITIP EPRVLMITPYDKTSLNDIEHAILASDLGLTPANDGNVIRLVIPQLTGERRQEIAKEVGKL AEEAKIAVRNVRQEAMKALKKQEKDGEITEDEERRLEKEVQKVTDESTKKIDQMADNKRK EITQG >gi|300496415|gb|AEAT01000096.1| GENE 50 55487 - 56212 1146 241 aa, chain - ## HITS:1 COG:L70624 KEGG:ns NR:ns ## COG: L70624 COG0528 # Protein_GI_number: 15673992 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Lactococcus lactis # 1 237 1 237 238 320 68.0 1e-87 MSQVKYNRIILKISGEALAGEKGTGIDPTVIKKLAHEIKLVHDMGVQVGVVCGGGNMWRG ETGAKLGMERAQADYMGMLATIMNGLALQDGLETAGVQTRLQTSISMRQVAEPYIRRVAI SHMEKNRVVIFGGGTGNPYFSTDTTAALRAAEINADVILMAKNGVDGVYTADPNLDPSAK KFAELTQLDMIAKGLQVMDRTASSLSMDTHIPLIVFNVNTPGNIKRVVEGENIGTIIRGD K >gi|300496415|gb|AEAT01000096.1| GENE 51 56362 - 57390 486 342 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 337 1 276 283 191 39 7e-48 MANITAKQVKELRETTGAGVMDAKKALVEAEGDMQRAIEIIHEKGEAKAAKKANRIAAEG LTGVYVDGNVAAIVEVNAETDFVAQNEQFKTLVNETAETIAKGKPANNEEALALTMPSGE SLEEAYVNATATIGEKISFRRFAVLEKTDDQHFGAYQHNGGHIGVLTVVEGGDEALAKHI AMHIAAMSPKVLSYKELDPAFVLEELAQLNHKIDQDNESRAMVNKPALPHLKYGSKAQLT DEVIAQAEEDIKAELKAEGKPEKIWDKIIPGKMARFMLDNTKVDQENTLLAQLYVMDDSK TVEQYLESVNASVVSFVRFEVGEGIEKKQEDFAAEVAAQMKN >gi|300496415|gb|AEAT01000096.1| GENE 52 57453 - 58214 1279 253 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104774224|ref|YP_619204.1| 30S ribosomal protein S2 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 253 1 253 253 497 99 1e-140 MSVVSMKQLLEAGVHFGHQTRRWDPKMKPYIFTQRNGIYIIDLQKTIKMLDDAYNYVKAV AQDDGVFLFVGTKKQAQEAIAEEATRAGQYYVNQRWLGGTLTNWTTIQSRVKRLKDLKKM AEDGTFDVLPKKEVSLLTKEMDKLQKFLGGIEDMPRIPDVMFVVDPKKEKIAVHEANKLG IPVVAMVDTNTDPTPIDVIIPSNDDAIRAIRLIAGTMADAVIEGKQGADNADVEKELSES AEENSAEEVDDAE >gi|300496415|gb|AEAT01000096.1| GENE 53 58378 - 59388 1029 336 aa, chain - ## HITS:1 COG:L193121 KEGG:ns NR:ns ## COG: L193121 COG4123 # Protein_GI_number: 15674123 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Lactococcus lactis # 2 248 4 249 250 172 38.0 7e-43 MIELKENERIDYMLGEQLKIIQDGQSFAFSLDTLLLAYWAKEAIKNRSKVVELCSGNAAA SLYMAAFNKAHYDDVELQEDIVSKARRSVELNDMQDRITVHQGNVKDAGSFLRKDSYDVV VVNPPYFKAPAGHKLNPDRSKAIARHELEINLEEIIAVSAGLLKMKGKMFMVHRPERLGE IINYGFKHDLAVKTVQPFVSRRGQDANLVIVEAVRSGKGDGLVLRDAIEVHDADGSNTPA IKEILEAKLPEEKHYFYVLLCSDGSFYGGYTNDLKKRLGAHNSGKGAKYTKSRRPVEMIY LEEYADKRTAMQREYWFKHHDRAWKEKFLHEQGVKF >gi|300496415|gb|AEAT01000096.1| GENE 54 59459 - 60073 751 204 aa, chain + ## HITS:1 COG:L114325 KEGG:ns NR:ns ## COG: L114325 COG0204 # Protein_GI_number: 15672094 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Lactococcus lactis # 1 204 10 213 213 186 47.0 3e-47 MLYRIFRPIARFIVWVLNGHLHVHHKERLPEGTYILVAPHRNWWEPILFALAASPTEFMF MTKQELFKNPVLRWILNNVHAFPVNREHPGPSVIKIPVKGLKSEGLSLIMFPSGTRHSAS LKSGALVIARMSGRPLLPAVYQGPLTFKGVLQRKGMEINFGNPIVIDRKTKLTPETEAAY NQQLEDAWKQIDQELDPDFHYEAK >gi|300496415|gb|AEAT01000096.1| GENE 55 60154 - 61140 1368 328 aa, chain - ## HITS:1 COG:aq_1866 KEGG:ns NR:ns ## COG: aq_1866 COG0136 # Protein_GI_number: 15606903 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Aquifex aeolicus # 2 324 4 334 340 269 45.0 4e-72 MKIGILGATGAVGRQMLECIEERQLPVEELRVFASERSKGKKLPFAGQELTLEVVSQERL NGLDYVLGAVSNSLSKEYRPLVEKSGAVYIDNSSAFRQEDGVPLVVPEINGQDALDHHGV IANPNCSTAITLMALAPIAKLSPIKAINACTYQAVSGAGMGGISELKDEVTALTKGESVE AKVFPAQIAFNVIADIGSPLENGYTTEEMKMQNEGRKILHLPDLLVTCTCVRVPVYRSHS IAVTVVTEEPVSVEAAENAIAAFDGDLLVTDHTPTPLENSDKDIVQVGRLRRDLTNPNGL TLWCTGDQIRKGAATNAVQIMEYLENNK >gi|300496415|gb|AEAT01000096.1| GENE 56 61141 - 62481 1520 446 aa, chain - ## HITS:1 COG:CAC0278 KEGG:ns NR:ns ## COG: CAC0278 COG0527 # Protein_GI_number: 15893570 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Clostridium acetobutylicum # 6 438 7 436 437 400 45.0 1e-111 MSKAVKFGGSSVANSEQFKKVKQIILADPDRKYVVTSACGKSGQEDHKVTDLLYLCAAHI TYDVSYESIFQSIVDKYMEIKRSLCLKIDLAGEFAKIRQNMARNLNLDYLVSRGEYLTGL CLAEYLDADFVDASWVIRFHYDGSIDLDKSQELLKAQVDPGRRVVIPGFYGSLPNGVIKV MSRGGSDITGSIVANAFDVDVYENWTDVSGFYVADPRIIKDPVQIPRITYSELRQMSYMG ANVLHDDAVFPVRQKNIPINVCNTNHPENPGTMIMNDCSELDAQEPPHVITGITGKQDFT VITMVKSHVSAEAGFLRKVLAVFEKFQISIESVPVTVDTFSIVVQTKKIERYLYEIVAEL KQDLHLDDIQVESQQAMLAVVGRAMRQMPGMSGKILSTLGDQQINIRTINQACDEQSIVI GVNNQDLVPAIKAIYQQFISEERVER >gi|300496415|gb|AEAT01000096.1| GENE 57 62474 - 63622 1233 382 aa, chain - ## HITS:1 COG:SA1164 KEGG:ns NR:ns ## COG: SA1164 COG0460 # Protein_GI_number: 15926909 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Staphylococcus aureus N315 # 1 306 4 318 426 211 39.0 3e-54 MQIAILGRGVVGGGIVKLVEEAETPLLQKIKIKKILVHRDEQILDDQHTTDFVEIVNDPE ISVVCECIGGVEPAHSYVKRALEAGKHVVTANKKMLAVYAGELFDLARQKGLVLAYEASV GGGIPWIDNIKHIQRLEPVTAFQGIFNGTSNYILSQMAEKDLDFAACLKEAQELGYAEKD PSDDIDGGDVCYKVCLSALTAFGKIADPSQVDQWGIRHLTKEDFAWAKANGRTIKLLGRG RQTGEKLSLQVLPVMLKKTSLLAGVGLNFNALETDSASLGPATFVGQGAGSLPTAHAAVQ DLLDLAEGKKEIVQSAEPGQLTDEEEQTFYLRTNRADFFQDVVAERISEKAFLTKKLTLA EISSLVKESGDPSSFLAGVADE >gi|300496415|gb|AEAT01000096.1| GENE 58 63762 - 64196 531 144 aa, chain + ## HITS:1 COG:CAC1234 KEGG:ns NR:ns ## COG: CAC1234 COG4492 # Protein_GI_number: 15894517 # Func_class: R General function prediction only # Function: ACT domain-containing protein # Organism: Clostridium acetobutylicum # 4 144 15 155 155 110 36.0 9e-25 MADYFYVHKKILPDYLEKVLEAREMLDSREAATVTEATERVGISRNTYYRYKDYVFRAKD PARGQQAVLSLLLADLPGALSAVLTCVTDHRASVLTISQAIPLASHASVLMSLDLAGLEG DINTLLADLKNLPFVKNLQLAGLE Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:34:47 2011 Seq name: gi|300496413|gb|AEAT01000097.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00053, whole genome shotgun sequence Length of sequence - 550 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 162 - 518 132 ## LDBND_0651 transposase for insertion sequence element Predicted protein(s) >gi|300496413|gb|AEAT01000097.1| GENE 1 162 - 518 132 118 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0651 NR:ns ## KEGG: LDBND_0651 # Name: not_defined # Def: transposase for insertion sequence element # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 118 89 206 206 228 100.0 5e-59 MVDEMYPEAEKIILVMDNLNTHKPSSLYKAFKPEEARRIIKKLEIHYTPKHGSWLDIAEI ELNVMTRQCLSQRIPDIETLREELSAWESERNNSYALVNWQFRTSDARIKLASLYPKL Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:34:50 2011 Seq name: gi|300496411|gb|AEAT01000098.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00075, whole genome shotgun sequence Length of sequence - 530 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 393 80 ## LA2_04410 IS4 family transposase Predicted protein(s) >gi|300496411|gb|AEAT01000098.1| GENE 1 3 - 393 80 130 aa, chain - ## HITS:1 COG:no KEGG:LA2_04410 NR:ns ## KEGG: LA2_04410 # Name: not_defined # Def: IS4 family transposase # Organism: L.amylovorus # Pathway: not_defined # 19 130 263 374 456 115 47.0 6e-25 MTFNITNSAKQKKLHPEYHKINAPNRRYKDKYSPKYRTAHWDFESFCPVHCRIVKLKIND PLLGKTKWEVLATNLSPSDFPLSEMRNLYHLRWDIESSFRKLKYDLGAVCFHSKKPAFQE IELYSQLIMF Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:34:53 2011 Seq name: gi|300496409|gb|AEAT01000099.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00081, whole genome shotgun sequence Length of sequence - 1552 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 75 - 1448 64 ## bpr_II320 IS4 family transposase Predicted protein(s) >gi|300496409|gb|AEAT01000099.1| GENE 1 75 - 1448 64 457 aa, chain + ## HITS:1 COG:no KEGG:bpr_II320 NR:ns ## KEGG: bpr_II320 # Name: not_defined # Def: IS4 family transposase # Organism: B.proteoclasticus # Pathway: not_defined # 11 457 14 448 448 303 38.0 9e-81 MTKKHQVFRQLDSVTDKAAEYINYFAYHPSKDFTRKRKMDAKTFIKTTLGMQGNCLNKEL ADAFPKFSERMTASAYEQQKSKVNPRLFKVILYEFNSTLKQPALYRGYRLLAIDGSDFAL PYDKHSPFLCNIQTRKTPSADNKLTTKGACLIHANILYDIANCCYLDCLLQSRKGMDERS AAVHMLQNLRLQHRYIVLMDRGYESFNLFEHGNRLPDCNYVVRLRTKDKGAIREISALPD QECDLEMTFNITNSAKQKKLHPEYHKINAPNRRYKDKYSPKYRTAHWDFESFCPVHCRIV KLKINDPQSGSTKWEVLATNLSSNDFPLSEMKKLYHLRWDIESSFRKLKYDLGAVCFHSK KPTFQEIELYSQLIMFNVVNRIISLCRVADAHRKWPHEIDFKEAANIVHRYYTTSMKDDP KQMIEEIEAYHHPVRKGRKYPRPLRFQGSVSLNYRIS Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:35:06 2011 Seq name: gi|300496391|gb|AEAT01000100.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00058, whole genome shotgun sequence Length of sequence - 17485 bp Number of predicted genes - 16, with homology - 16 Number of transcription units - 10, operones - 4 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 24 - 509 -292 ## gi|300812617|ref|ZP_07093030.1| conserved domain protein 2 2 Tu 1 . - CDS 618 - 1187 -337 ## TSC_c12530 hypothetical protein - Prom 1361 - 1420 1.9 + Prom 1131 - 1190 2.3 3 3 Op 1 1/0.000 + CDS 1436 - 1894 631 ## COG2357 Uncharacterized protein conserved in bacteria 4 3 Op 2 40/0.000 + CDS 1897 - 2565 750 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 5 3 Op 3 . + CDS 2568 - 3827 1213 ## COG0642 Signal transduction histidine kinase + Term 3830 - 3860 1.0 + Prom 3858 - 3917 2.9 6 4 Op 1 1/0.000 + CDS 3982 - 5082 1523 ## COG0183 Acetyl-CoA acetyltransferase 7 4 Op 2 2/0.000 + CDS 5084 - 6310 1292 ## COG1257 Hydroxymethylglutaryl-CoA reductase 8 4 Op 3 . + CDS 6314 - 7477 1802 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase + Term 7490 - 7525 4.0 + Prom 7539 - 7598 5.3 9 5 Tu 1 . + CDS 7641 - 8999 1595 ## COG2966 Uncharacterized conserved protein + Term 9009 - 9068 13.1 - Term 8996 - 9054 9.1 10 6 Tu 1 . - CDS 9058 - 9564 877 ## COG2606 Uncharacterized conserved protein - Prom 9584 - 9643 3.0 + Prom 9534 - 9593 7.2 11 7 Tu 1 . + CDS 9627 - 10571 1582 ## PROTEIN SUPPORTED gi|104773938|ref|YP_618918.1| ribosomal protein L11 methyltransferase + Term 10605 - 10665 -0.8 + Prom 10617 - 10676 6.5 12 8 Op 1 7/0.000 + CDS 10712 - 12973 3537 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 13 8 Op 2 . + CDS 13002 - 13439 723 ## COG1490 D-Tyr-tRNAtyr deacylase + Term 13652 - 13691 6.2 + Prom 13635 - 13694 6.7 14 9 Op 1 13/0.000 + CDS 13720 - 15006 1901 ## COG0124 Histidyl-tRNA synthetase 15 9 Op 2 . + CDS 15022 - 16866 2949 ## COG0173 Aspartyl-tRNA synthetase + Term 16891 - 16933 7.3 - Term 16870 - 16932 13.1 16 10 Tu 1 . - CDS 17163 - 17339 76 ## LBUL_0814 hypothetical protein - Prom 17406 - 17465 4.1 Predicted protein(s) >gi|300496391|gb|AEAT01000100.1| GENE 1 24 - 509 -292 161 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300812617|ref|ZP_07093030.1| ## NR: gi|300812617|ref|ZP_07093030.1| conserved domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] conserved domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 25 159 57 206 234 99 42.0 6e-20 MRQKRQRDHPHLRGEYQLSPASAQLETGSPPLAWGILSESHWTATPFRITPTCVGNTDDL GCYACELEDHPPLAWGILGCVVLELGLCGITPTCVGNTRKKSKKCLHLRDHPHLRGEYLK TFIFNLLAFGSPPLAWGIQGGQGWILSNSRITPTCVGNTGL >gi|300496391|gb|AEAT01000100.1| GENE 2 618 - 1187 -337 189 aa, chain - ## HITS:1 COG:no KEGG:TSC_c12530 NR:ns ## KEGG: TSC_c12530 # Name: not_defined # Def: hypothetical protein # Organism: T.scotoductus # Pathway: not_defined # 71 181 17 127 477 70 36.0 3e-11 MENTQYEKHNNIKNGLPPHTWGIPRFTKCCSRRARITPTCVGNTRIDSLHNALERDHQYI VRVAVSTMIKGSPPLAWGIPSSTASNWPALRITPTCVGNTRWCTIPGSSAWDHPHLRGEY IVMLVLSAWPTGSPPLAWGIHDYRDDGGNKMRITPTCVGNTHPVPLFIQFHEDHPHLRGE YQHRVHARC >gi|300496391|gb|AEAT01000100.1| GENE 3 1436 - 1894 631 152 aa, chain + ## HITS:1 COG:SPy0873 KEGG:ns NR:ns ## COG: SPy0873 COG2357 # Protein_GI_number: 15674898 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 151 61 211 216 198 62.0 3e-51 MTQKCERKGMPLTPESALIENRDAIGLRIVCNFIDDIYTCIDLLKKQDNFKIINEKDYIT DAKPNGYRSYHLIMEVVTPFEDVHGNKPGTYYVEIQLRTIAMDTWASLEHEMNYKHDIKN PERISKELKRVADELASCDVSMQTIRQLIKEG >gi|300496391|gb|AEAT01000100.1| GENE 4 1897 - 2565 750 222 aa, chain + ## HITS:1 COG:SPy0874 KEGG:ns NR:ns ## COG: SPy0874 COG0745 # Protein_GI_number: 15674899 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Streptococcus pyogenes M1 GAS # 1 219 1 219 222 249 58.0 3e-66 MKILLAEDEAQLNRVLTVAMQKSGYDVDSVFNGQEAVDAVKKHPYDVIIMDIMMPVKNGL DAVKEIRATGDKTYIMMLTAKSEIDDKVTGLDVGADDYLTKPFSLKELLARLRSKERRSE DYNSTQELNYDNLKLDLNSQELSSNNSISLSKQETGLMRYFLLNPGKAISTEELFNHVWK NEDESEDVVWVYISFLRSKLASIGANVQISGEKGGEFCLERA >gi|300496391|gb|AEAT01000100.1| GENE 5 2568 - 3827 1213 419 aa, chain + ## HITS:1 COG:SPy0875 KEGG:ns NR:ns ## COG: SPy0875 COG0642 # Protein_GI_number: 15674900 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Streptococcus pyogenes M1 GAS # 1 413 1 408 410 298 39.0 1e-80 MIKRIRRRFIWLATLSLFLVMFFSFSSLIGISLFESNHEADQVLSIIVKNNGRLDEVQAK KRLGDQYNKEGIFKYRYFTANINTKKQTLTVIDADHIIGYSINSVSSRKKQISMRLSAGQ LKGTIQSNGVRFRYLAKKISANKYYICFIDLSPLMQSALLLVRYALIFTFGGILVFVIIM ALLADKAIQPIKDAYDKQRRFITNAGHELKTPLAVISANAEMEELLGNDDEWNESTKEQV VRMTGLINQLITLTRMSEPEELVLSKVNFSEITKESADSFKSVLAKDNKKYVVSIDPDLY INAEQHSLLELANILIDNAQKYCDPEGEVMVVLAKSRLNQNAVLTVTNSYKNGAGIDTNR FFERFYREDESHHYDQKQKNGFGIGLSMAQDLVAAFGGKINASWSDGVMNFTVTFKRVH >gi|300496391|gb|AEAT01000100.1| GENE 6 3982 - 5082 1523 366 aa, chain + ## HITS:1 COG:lin1453 KEGG:ns NR:ns ## COG: lin1453 COG0183 # Protein_GI_number: 16800521 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Listeria innocua # 1 352 1 375 389 303 46.0 3e-82 MQDIYIVAAKRTPFGRYHKQLADFSAIDLGQIALHGALKEAGLDAEALDALFMGNVLSAG LGQNMARQIALNAGMRQDSVAVSINEVCGSSLKAARLAEAQMLIGDLGLVAVGGSESMTN APKEIMFSDGLVDSFSGKSMGITAENVAKRNHISRQDADAFSLSSHQKAVKAQAEGLFAD EIIQIEDLKQDENVRPDTSLEALAGLKTSFLEDGTVTAGNASPISDGASMIILATAEKVA EYQLTPLAKLGAYAEVGYDPEFMGYGPYYAIRKLLNETGRQVADYDFFEINEAFAATTLA VARDLEIPLAKVNKQGGAIALGHPLGASGTRLLATAARQLQRGGQRAIASLCIGGGLAIA FEIEKA >gi|300496391|gb|AEAT01000100.1| GENE 7 5084 - 6310 1292 408 aa, chain + ## HITS:1 COG:SP1726 KEGG:ns NR:ns ## COG: SP1726 COG1257 # Protein_GI_number: 15901559 # Func_class: I Lipid transport and metabolism # Function: Hydroxymethylglutaryl-CoA reductase # Organism: Streptococcus pneumoniae TIGR4 # 34 406 46 423 424 253 40.0 4e-67 MKFYQLPPEERRQFLQEDGVPLEDIPAADLARLDEMSENVVGEVKFPLSCLTRALVNGKN WRIPMTTEEASVVAAANHGMSVFAKAGGVKATSQRDGIYGQIVLEVTEAFSLAGFKNKFP AYIKEANKEFASLIRHGGGLKDLTARQEADLVYLLALVDPAEAMGANKTNAILEFLAQKM LAFPGVEAKLFAILSNYPSQLTTAKVAIPVSLLSKKGDLAEGREVAKKMALLAKIGSSDP YRAVTNNKGIMNGVDAVMLATGNDYRAVEAACHAYAAKSGEYRSLSSWKLEGENLLGQVT LPLALGVVGGSISSRPDIRQSYAILGKIKAAELAELTASVALANNFAALNAISTKGIQAG HMRLQSRNVVQTLPAAAEEKEAVYQMMISQGKYGETAAKNFLKELRGQ >gi|300496391|gb|AEAT01000100.1| GENE 8 6314 - 7477 1802 387 aa, chain + ## HITS:1 COG:lin1454 KEGG:ns NR:ns ## COG: lin1454 COG3425 # Protein_GI_number: 16800522 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Listeria innocua # 1 387 1 388 388 372 48.0 1e-103 MDIGIDQIGFYTPNKFVDMVDLANARNQDPNKFLIGIGQDRMAVADKTQDAVSMGINATA EYLDQVDLEQLGLLIFATESGIDQSKSASLFVKEALNLPARIRTFEIKEACFALTASLQV ARDYVRAHPHHSAMIIGSDIARYGLATAGEVTQGAGAISMLIKENPAIIALEDGHTSHSE NINDFWRPNNLATAVVDGHYSRDVYLDFFKSTFKPFLAEKQLQVSDFAGICYHLPYTKMG YKAHKIAIEGQDDETVKRLSDNFQLSAKYSRQVGNIYTASLYMSVLSLLENGDLEAGDRI GFFSYGSGAMAEFFSGKVVAGYQKRLRPALHARMLKERIRLGVGQYEDIFTEGLENLPEN VEFTSDANHGTWYLAGQEGYVRQYKQK >gi|300496391|gb|AEAT01000100.1| GENE 9 7641 - 8999 1595 452 aa, chain + ## HITS:1 COG:YPO0484 KEGG:ns NR:ns ## COG: YPO0484 COG2966 # Protein_GI_number: 16120814 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Yersinia pestis # 111 293 86 259 266 68 31.0 3e-11 MKTESTEQEYHHHLSHHHHMRVQWEEFFQSDDETKIKEATLIEKGSIISRVGMMMLSCGT GAWRVRDAMDTLARALDLTCSTDIGLISIVCTYFDVDNQSYSQSLALPTTGVNMAKLNEL EKFVRQFEAAGGDFEIKTIRRRLGEIEHMKGRYPLWGSSLAAALACGGFIFLLGGGLPEI ICSFIGAGLGQFARGSLAKRRITIAATTAVGVAAACLSYYLAFMLGHLLFNVDMIHMRGY IGAMLFVIPGFPFITSGLDIAKLDMRSGLERMAYAIFIILIATGTGWVMATALQIKPGDL PALHLSKAILTACRLVASFCGVFGFSLMFNSHRRMAAAAGLVGAIANTMRLSLVDFAHFP APLAAFLAALLAGLLAGYVREKVGYPRIALTVPSIVIMVPGLYMYRGIFLLVLTSVGAGA TWMTEALMLVMSLPAGLLTARILTDKKWRRVD >gi|300496391|gb|AEAT01000100.1| GENE 10 9058 - 9564 877 168 aa, chain - ## HITS:1 COG:L115671 KEGG:ns NR:ns ## COG: L115671 COG2606 # Protein_GI_number: 15672298 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 168 1 158 158 134 47.0 5e-32 MSKKKKNKDKLDKTLVEKILDQHKIAYEQHISEISKDHGVAQVGTGKPILDGHPVYKTLA VNGNKTGPIVGVVPLSVHLDLKKIAKASGNKKCEMIPLKQLEKTTGYVHGANTPIGIYHS KKFPIFLDESVLNEDGIWVSSGEVGRSVMVNPLDLQKLVKATVANLQE >gi|300496391|gb|AEAT01000100.1| GENE 11 9627 - 10571 1582 314 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|104773938|ref|YP_618918.1| ribosomal protein L11 methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 314 1 314 314 613 98 1e-175 MKLLEIKIESSYDVEDALAYFATEDLKALGTEARRRSDFEQAGWLHDSTVVDMDDIPNLP DELEFIAYFDEETDPEETVKCFKDKLAELAGYGLKTAPAEISVDYVADQDWNTVWQKYYH VINLSRHLAIVPEWEDYQPPFKDQEIIRLDPGLAFGTGNHQTTQLAMLGIERAMVKPLTV ADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIHDIALQKTSLLADVDG KFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENCFQIDLKMR AGRWIGLAISRKHD >gi|300496391|gb|AEAT01000100.1| GENE 12 10712 - 12973 3537 753 aa, chain + ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 1 753 1 738 738 795 51.0 0 MSKYTEMTHEQVMAACKKYMTADQLAFVESAYQFAARAHEGQTRASGQPYIVHPTQVAGT LANLGLDPDTVAAGFLHDTVEDTSVTNDDIKEKFGADVAFIVDGVTKLNKYEYKSHKEFL AENHRKMLIAMAKDLRVILVKLADRLHNMHTLEHLRPDKQRRIAAETLDIYAPLADRLGI GTIKWELEDMSFHYMNPEAYYKIVSMMDAKRSEREGYIKDAIDYLRGTLDSLGIKYDISG RPKHIYSIYKKMVNKHKDFNEIYDLLAVRVIVPTVKDCYAVLGAVHTKWKPMPGRFKDYI AMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAHWAYKRGNFQGVDEKDGG ALDIGREILELQKDSSDADEFMEAVHSDIFADKVYVFTPKGEVYELPKGSVTLDFAYAIH TQVGDHAIGAKVNDKLVPLDYKMKNGDVVDILTQGNARPSRDWAEMVKTSRAKNKIRRYF RDVDREESLARGKSELVDLLKENGLSAKDFLDKSHIDEVLDHFSFKTDEDMYAAIGFGNM SAVSIYNRLTADLRRQQEEEKQKQFEAQIMSAGQQAAASSVVKKPAPQKDDAKSKTKGKK PDSLVRVQGLEDLDMHFAKCCNPVPGDPIVGYVTKGRGVTVHRADCRNVVSADPAVQGRM IDVEWNNIDEGKQASFNANFELFGYNRQKLLGDVINRLNALTKNITNVSASVNEENIAHF YITVEVRNAAQLNDIMAKLRDIPDVYDTKRTDN >gi|300496391|gb|AEAT01000100.1| GENE 13 13002 - 13439 723 145 aa, chain + ## HITS:1 COG:SPy1980 KEGG:ns NR:ns ## COG: SPy1980 COG1490 # Protein_GI_number: 15675771 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Streptococcus pyogenes M1 GAS # 1 144 1 143 147 151 55.0 4e-37 MRVVIQRVNHAAVRIDGETVGQIQKGLLLLVGLAEGDGEEQVVKAADKIAKMRIFEDEAG KTNLGIKDVGGQILSVSQFTLLADTKKGNRPSFVHAMRPPKSSQLWEEFNQELVKRGLTV ETGEFGADMKVELENDGPFTIVLDL >gi|300496391|gb|AEAT01000100.1| GENE 14 13720 - 15006 1901 428 aa, chain + ## HITS:1 COG:SP2121 KEGG:ns NR:ns ## COG: SP2121 COG0124 # Protein_GI_number: 15901936 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 412 1 411 429 432 53.0 1e-121 MRVQRPKGTVDILPETSGQWEKVEQTARDLFKRANYHEIRTPSFENYELFSRSSGETSDV VEKEMYDFEDKGGRHIALRPEGTAGVVRAYVENKIYGPDYVKPFNVYYIAAMYRYERPQA GRQREFHQIGVESFGSNGYLSDVETILLGHDLLAELGVKNYELHINTLGDSEVRQAYHDA LVDYFTPVKDQLSEDSQRRLGKNPLRILDSKAEEDQQFLPEAPKIRDYLDEESKENFNKI LASLDKLGVKYVIDDDLVRGLDYYTGVIFEFMVDDPTLWASPSTVLGGGRYNHLVEEFSG PETPAVGFGIGEERLMLVLSKQNPEMFEDQGIDFFITNIGEGTDIKAVEVARQLRSLGFS AQYDVDQKKLKAQFRKADRVGARYVVTLGAKELAEGKLTVKRLSDGQQFSLEFTDLEDKA NLLSKIEK >gi|300496391|gb|AEAT01000100.1| GENE 15 15022 - 16866 2949 614 aa, chain + ## HITS:1 COG:lin1554 KEGG:ns NR:ns ## COG: lin1554 COG0173 # Protein_GI_number: 16800622 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Listeria innocua # 4 588 1 587 591 668 55.0 0 MMQMEKRTDYCGNITSQYLDQDVLLYGWVQRVRNLGQLIFIDLRDREGIVQVVVNHDSGQ ELMDVASSLGQEYVVEVKGHVNERSSKNPDMKTGDVEVIASEITVLNKAKTPPFEIKDDL VASEQTRLKYRYLDLRRPTLQNALIMRAQIMTATNAYLSGEGFINIETPDLGKSTPEGAR DYLVPSRVYPGSFYALPQSPQIFKQLLMGAGFDKYYQIARCFRDEDLRGDRQPEFTQIDL ETSFMDEEGVQEVTEGLLAKVMKDVKGIDLQLPLPRITWQESMDKYGCDKPDTRYEMLIH DLGNVFAKSGFKVFASALENGGFVRGIAVKGGAKFYSRKKIEAMQDYIKRYHAKGLAWVK YEDGDFSGPVSRFLSEEEKAGLVQEFSLEGGELLLFIADQWKVCCDSLDYLRRQTARETG IIPKDTYKYLWVVDWPLFEYDEGDERWIAAHHPFTMPDDKGIELLETDPHKAHARSYDIV LNGYELGGGSIRIHKRDIQEKMFKALGFTKERAYEQFGFLMDALDMGFPPHAGLAIGLDR FAMLLAGKDNIRDVIAFPKNASASEPMMHAPAPVADQQLTDLGIEVAEAAKEGVEKYEAS LEAEAAEDVKSHEE >gi|300496391|gb|AEAT01000100.1| GENE 16 17163 - 17339 76 58 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0814 NR:ns ## KEGG: LBUL_0814 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 43 1 43 211 77 97.0 2e-13 MRKPMLAGILAAELALVGAAVFYHQSQADKSSQSAGSSKTYKVQQGGKGQGRQGRRKV Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:35:33 2011 Seq name: gi|300496358|gb|AEAT01000101.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00098, whole genome shotgun sequence Length of sequence - 30423 bp Number of predicted genes - 29, with homology - 29 Number of transcription units - 17, operones - 6 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 1750 2482 ## COG1154 Deoxyxylulose-5-phosphate synthase - Prom 1880 - 1939 4.9 + Prom 1847 - 1906 5.0 2 2 Op 1 . + CDS 1926 - 2075 260 ## PROTEIN SUPPORTED gi|104774465|ref|YP_619445.1| 50S ribosomal protein L33 3 2 Op 2 . + CDS 2082 - 2252 169 ## LDBND_1567 protein translocase subunit SecE/sec61 gamma + Term 2290 - 2325 2.0 + Prom 2263 - 2322 3.2 4 3 Op 1 45/0.000 + CDS 2344 - 2898 891 ## COG0250 Transcription antiterminator + Term 2967 - 2998 1.0 + Prom 2907 - 2966 3.1 5 3 Op 2 55/0.000 + CDS 3024 - 3449 694 ## PROTEIN SUPPORTED gi|104774462|ref|YP_619442.1| 50S ribosomal protein L11 6 3 Op 3 . + CDS 3533 - 4228 1144 ## PROTEIN SUPPORTED gi|104774461|ref|YP_619441.1| 50S ribosomal protein L1 + Term 4254 - 4287 5.2 + Prom 4300 - 4359 5.2 7 4 Tu 1 . + CDS 4391 - 5395 1413 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Term 5423 - 5471 9.1 - Term 5417 - 5451 3.2 8 5 Tu 1 . - CDS 5491 - 6741 1674 ## COG0004 Ammonia permease - Prom 6792 - 6851 5.4 - Term 6879 - 6919 4.1 9 6 Tu 1 . - CDS 6965 - 7366 530 ## Ldb1662 hypothetical protein - Prom 7390 - 7449 6.4 + Prom 7545 - 7604 6.0 10 7 Op 1 47/0.000 + CDS 7627 - 8136 792 ## PROTEIN SUPPORTED gi|104774456|ref|YP_619436.1| 50S ribosomal protein L10 11 7 Op 2 . + CDS 8189 - 8554 570 ## PROTEIN SUPPORTED gi|104774455|ref|YP_619435.1| 50S ribosomal protein L7/L12 + Term 8583 - 8630 9.1 + Prom 8621 - 8680 5.3 12 8 Op 1 6/0.000 + CDS 8735 - 9748 958 ## COG1609 Transcriptional regulators + Prom 9785 - 9844 7.9 13 8 Op 2 35/0.000 + CDS 9942 - 11234 1648 ## COG1653 ABC-type sugar transport system, periplasmic component 14 8 Op 3 38/0.000 + CDS 11279 - 12160 859 ## COG1175 ABC-type sugar transport systems, permease components 15 8 Op 4 . + CDS 12153 - 12998 629 ## COG0395 ABC-type sugar transport system, permease component 16 8 Op 5 . + CDS 12998 - 14278 679 ## COG1621 Beta-fructosidases (levanase/invertase) 17 8 Op 6 1/0.000 + CDS 14294 - 15406 1503 ## COG3839 ABC-type sugar transport systems, ATPase components + Term 15496 - 15521 -0.5 + Prom 15487 - 15546 1.8 18 8 Op 7 . + CDS 15573 - 16436 1010 ## COG1940 Transcriptional regulator/sugar kinase + Term 16446 - 16499 17.1 + Prom 16791 - 16850 6.1 19 9 Tu 1 . + CDS 17008 - 18633 2772 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 18647 - 18698 11.4 20 10 Tu 1 . - CDS 18695 - 19612 1193 ## Balac_0120 ferric reductase - Prom 19716 - 19775 3.2 21 11 Op 1 2/0.000 - CDS 19951 - 20733 618 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis 22 11 Op 2 . - CDS 20742 - 21233 534 ## COG3976 Uncharacterized protein conserved in bacteria - Prom 21273 - 21332 5.1 + Prom 21344 - 21403 5.1 23 12 Tu 1 . + CDS 21446 - 21907 739 ## COG0698 Ribose 5-phosphate isomerase RpiB + Term 22016 - 22044 -0.9 + Prom 21946 - 22005 5.5 24 13 Tu 1 . + CDS 22061 - 22333 178 ## PROTEIN SUPPORTED gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 + Term 22352 - 22387 4.1 + Prom 22398 - 22457 5.0 25 14 Op 1 6/0.000 + CDS 22491 - 23618 1454 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 23658 - 23689 2.7 + Prom 23630 - 23689 8.7 26 14 Op 2 . + CDS 23718 - 24836 1303 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 24883 - 24914 3.4 - Term 24871 - 24902 3.4 27 15 Tu 1 . - CDS 24959 - 25906 1053 ## COG1472 Beta-glucosidase-related glycosidases + Prom 25929 - 25988 4.6 28 16 Tu 1 . + CDS 26147 - 29713 5800 ## COG3867 Arabinogalactan endo-1,4-beta-galactosidase + Term 29747 - 29779 5.0 - Term 30121 - 30163 9.5 29 17 Tu 1 . - CDS 30189 - 30422 380 ## gi|300812650|ref|ZP_07093062.1| conserved hypothetical protein Predicted protein(s) >gi|300496358|gb|AEAT01000101.1| GENE 1 1 - 1750 2482 583 aa, chain - ## HITS:1 COG:L123365 KEGG:ns NR:ns ## COG: L123365 COG1154 # Protein_GI_number: 15673655 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Deoxyxylulose-5-phosphate synthase # Organism: Lactococcus lactis # 8 582 3 579 580 533 48.0 1e-151 MNQHPEYLLNKIKSPADLKVLDLEEMKQLASEIRHLIIEKDAAVGGHLGPDLGIVELTIA YHYVFDAPGDKIIWDVSHQTYPHKMLTGRAYAWLDPEAYGKVTPYTNPDESPYDYYAVGH TSTSISLATGMAKARDLLGGSERIMAVIGDGSLTGGMAYEGLNNAALEKGNLVIVINDNQ WSIDQNVGGLTTALKKLRDSQGQDPENPFKAFGFDYRYVADGNDLESMINAFSEIRDVDH PLVLHVNTLKGKGYQPAIEDEEKHHWVRPFNLSDDSPKNITAGSTPAEIAIKTVASAIDG GQENIMPITAAIPGVFGLDSFKESYPDHYLDVGIAEQDSVAFAAGFAKAGGQPVLFENST FLQRAFDQLSHDVAANNLPVVMIVAGGGIQANSKTHVGVFDQVMVSNLPNWKYLAPTSLT EEAAMINWALKQKDGPVAIKLPVRPVPAGGAVLEGYRHIHYQKRRAGKKIAILALGDMQE LGSQVAEELNAALYNPLSANILDTDCLDHLARHYQAVITLENNILDGGFGQKVAGYLADR PVLVKTFGEKREYTDVDQSYDQILVRNQLTAEQMVASVKQLFN >gi|300496358|gb|AEAT01000101.1| GENE 2 1926 - 2075 260 49 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|104774465|ref|YP_619445.1| 50S ribosomal protein L33 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 49 1 49 49 104 100 6e-22 MAVKKAALACSVCGSRNYSITANSNRTKRLELNKFCKHCGKKTLHKETR >gi|300496358|gb|AEAT01000101.1| GENE 3 2082 - 2252 169 56 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1567 NR:ns ## KEGG: LDBND_1567 # Name: secE # Def: protein translocase subunit SecE/sec61 gamma # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: Protein export [PATH:lde03060]; Bacterial secretion system [PATH:lde03070] # 1 56 1 56 56 100 98.0 2e-20 MIKFFKSVGQEMKLSHWPSAKENRRDTANVVVTSLLYAIFLGALDWAFAKLIQLVL >gi|300496358|gb|AEAT01000101.1| GENE 4 2344 - 2898 891 184 aa, chain + ## HITS:1 COG:BH0118 KEGG:ns NR:ns ## COG: BH0118 COG0250 # Protein_GI_number: 15612681 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Bacillus halodurans # 6 182 2 178 178 183 54.0 1e-46 MVESAKKQWYVLHTYSGFEDKVRSDLLSRAQSLGMQDYIFRVVVPQEPKIEDVRGKKEEV NEKVFPGYVLVEMVMTDESWFVVRNTPNVTGFVGSHGGGSKPSPLYEEEVRAILQMQEGE ATEKVDYDYEVGESVMITAGAFNGMVGKIAEIQDDKQKLFLTIDMFGHATTAELGFDQVK KMED >gi|300496358|gb|AEAT01000101.1| GENE 5 3024 - 3449 694 141 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|104774462|ref|YP_619442.1| 50S ribosomal protein L11 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 141 1 141 141 271 99 3e-72 MAKKVINVVKLQIPAGAATPAPPVGPALGQAGINIVGFTKDFNARTADQKGMIIPVVITV YEDRSFDFVTKTPPAPVLLKQAAGIQKASGEPNKNKVGSVTTAQVKEIAETKMKDLNAAS IEAAMRMVEGTARSMGIEVKD >gi|300496358|gb|AEAT01000101.1| GENE 6 3533 - 4228 1144 231 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|104774461|ref|YP_619441.1| 50S ribosomal protein L1 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 231 1 231 231 445 99 1e-124 MPKHGKKYVEAAKKVDSSKLYSVEDAIKLVKETSYANFDASVEVSYNLSVDPKQADQQIR GSIVLPNGTGKSVKVIVFAEGPQAEAAKAAGADEVGADDLVEKVQNGYLDFDVVIATPMM MAKVGRLGRVLGPKGLMPNPKTGTVTMDTAKAVQNVKAGQVEYRVDRQASIHAAIGKVSF TEEQLTENFRALQNAILRAKPASAKGQYIKSCAVAATFGPGIKLDPIALMA >gi|300496358|gb|AEAT01000101.1| GENE 7 4391 - 5395 1413 334 aa, chain + ## HITS:1 COG:CAC1488 KEGG:ns NR:ns ## COG: CAC1488 COG0463 # Protein_GI_number: 15894767 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Clostridium acetobutylicum # 3 334 2 338 338 246 39.0 4e-65 MEKLLTLIVPCYNSAEYLNRCVDSLLPGGNRVQIILVDDGSTDETGRMLDDYQAKNLNLD LEVVHQENAGHGGAINNGLRLAKGKYVKIVDSDDWLDQEAYKEVLDYLESNPEVDLFLAN YVYDKPAAGRQRVIKFPHLPVGRTFSWDEVKLRMGQYFMLHSVIYNRKVLDRAKVALPTK VSYDDNILVFEPMVQVRTMRYLPVNLYHYFIGRDDQSVNEKVMLKKIDQQILINKQLIVF YASQVNKRAPYAKYMKYFLEAVTGVTSVILIRGKKKEYIAKKDELWQFLKTYDLETYKSF KRRLVGHFVSRDVLPMRQMVSGAYLILQRLYSFN >gi|300496358|gb|AEAT01000101.1| GENE 8 5491 - 6741 1674 416 aa, chain - ## HITS:1 COG:L0236 KEGG:ns NR:ns ## COG: L0236 COG0004 # Protein_GI_number: 15673574 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Lactococcus lactis # 1 403 1 404 413 286 46.0 6e-77 MNTANTVFLIIAAVLVLMMTPGLAFFYGGLVSKKNVVNTMISVFIICSLAIVLFAAFGYE LCFNGNVAGIFGRVQHIFLSGSDLTKVVLKEQGITAASYLLFEMMFAIITPALFVGATVG RMRFNFLLVFVFFWSVLVYYPLVHMVWGTGGLLAGWGILDFAGGTVVHINAGITALVLSI FLGPRYQKQTRPYSLPWVLLGTAILWLGWYGFNAGSAFGMNQTALTACLTSTVAAAASMM TWLLLEEAFSGKASLDGICTGTLCGLVGITPGAGYETCAGALFTGILCSLASYFFISQVK GQLSFDDPLDAFGCHGISGIVGALTVGLFASQKVDPGISTSGLFYGGSWELLGKQAAGTL FTIVFTLLMVSLITAVLKRFVNMRVSARDEEVGLDLSEHGEFADCQISASQAIFGK >gi|300496358|gb|AEAT01000101.1| GENE 9 6965 - 7366 530 133 aa, chain - ## HITS:1 COG:no KEGG:Ldb1662 NR:ns ## KEGG: Ldb1662 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 133 74 206 206 241 99.0 7e-63 MKSKLIDIFYFFLAGISGTLAVFSMFKDHSAASIAMDVLFLIISAYFIVRGFLDIESENK KLSKNWQILSWIAWCLLLLGVILTLTGYKLGINGLGWGGFVLFLLCSFVVPEQANDKNFH VKRRDETGFDDKN >gi|300496358|gb|AEAT01000101.1| GENE 10 7627 - 8136 792 169 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|104774456|ref|YP_619436.1| 50S ribosomal protein L10 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 169 1 169 169 309 97 1e-83 MSQATIAAKAKFVEEFAEELKSAKSIVVINYLGLTVDQVTAFRAELRESNAKMKVVKNTY LRRAAAQAGLEDLASVFVGPSAVIYTDDEDNVTAPARIAADYAKKFDVVEIKGGALEGQV ATKEQVEELAAIPGREGLLSMLLSVLQAPVRNFAYVVKAVAESKEESAE >gi|300496358|gb|AEAT01000101.1| GENE 11 8189 - 8554 570 121 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|104774455|ref|YP_619435.1| 50S ribosomal protein L7/L12 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 121 1 121 121 224 99 7e-58 MALDTANIIEQLKGASILELNDLVHAIEEEFGVTAAAPVAAAGAAGGAEEAKSSFDVELT SAGTEKVKVIKIVKEVTGASLLDAKKTVDGAPVVLKEGLSEDEANELKAKLEEVGATVTL K >gi|300496358|gb|AEAT01000101.1| GENE 12 8735 - 9748 958 337 aa, chain + ## HITS:1 COG:SP1799 KEGG:ns NR:ns ## COG: SP1799 COG1609 # Protein_GI_number: 15901628 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 3 326 9 331 333 283 46.0 3e-76 MATMKDVAREAGVSLGTVSRVINHAAGIKPATLEKVKAAIEKLNYVPDQYARGMKLNRSY TVALMVPTIWNSFNAEFAYHVEKALAKQGYKMLLCDYDDDPDRELAYIQMVRENKIDAII GITYGDIDKYIDSQLPFISIDRYYKQRVSYVASQNYEGGRLATSELLKHGAKHLAFVGSY NQYPNDTTRRYEGFCDYLKERDLPILAIHELEPVESFFPLLDQLFSQHPEIDGIFCNTDT LLYDVWRWCVANKLRVPDDVQLIGYDGMRMTDSQRLPVSTIAQPLQEMAEGAVKLALGKL NDPQMKEKHIFFPIKFVEGFTTKNNHSQIDLLKNPMG >gi|300496358|gb|AEAT01000101.1| GENE 13 9942 - 11234 1648 430 aa, chain + ## HITS:1 COG:AGpA379 KEGG:ns NR:ns ## COG: AGpA379 COG1653 # Protein_GI_number: 16119492 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 33 402 27 391 422 136 28.0 8e-32 MKHWKIGVMTVAALAGLSLTACGKGSSDSNSKDITMWVHFSNTDPEGKALAKNIKDFNKT NKHGYHATVKYIPRSGSGGGYEDKLNAAVNSGSLPDVLTLDGPNTAAYANAKIIQPVGQY ITNKDDILSTIKDQGTYKGKLYAVGYSESSIGFYYNKKMFKAAGISNSELPTLNKPWTWD QFNAICKKLHDKYKSPILDMSLSDHSEMSLYSLAPFVWSAGGDITNKAGTKAIGYFNSKE TASAFKFVQSLVKNKYTTVSPKDKGFETGKYAMLMTGTWEVQTLKTQYKSLDWGVLPYPV SPKTKKLVSPTGSWQYAMSSQAKNKKAAGALVNYLAGTKASYRTDMANTVLPARKSTSKL MLKDADEATKFFIKQNQQSGHARPVIVNYPQITRTFAETMQDATYKPNTDVQSLLNKQAK VMQKYLDQKN >gi|300496358|gb|AEAT01000101.1| GENE 14 11279 - 12160 859 293 aa, chain + ## HITS:1 COG:lin0760 KEGG:ns NR:ns ## COG: lin0760 COG1175 # Protein_GI_number: 16799834 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Listeria innocua # 7 285 13 289 296 205 37.0 9e-53 MNQKGWHKQVGWLYVLPAMLLLLTFLIIPFCMSINYSFTDYNMLTPGLKKFVGLQNYLQT LKDPVFLKSLRNILQFVVFIIPIQLGMALGLALIVNKQRPGNMFFKISFFAPNVVSLTVT AVLWMYIVNPDQGLLNSMLGLLHISPQPLLTSPKQAMFVIIGISAWQGAGYQMLIFLAGL QDIPHSLYEAAELDGANAWQRFRHITMPSLRPTTMMIMTTTLISALNLITQSMIMTQGGP DNATMTPIYYIYRTGFTDRQLGLASAMSVIYGIVIIFFTIIQRKVEGRAQKDE >gi|300496358|gb|AEAT01000101.1| GENE 15 12153 - 12998 629 281 aa, chain + ## HITS:1 COG:lin0761 KEGG:ns NR:ns ## COG: lin0761 COG0395 # Protein_GI_number: 16799835 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 9 277 14 289 291 162 33.0 8e-40 MSRKKFHIIWTTVLITLIALFFLFPLVWMIASSMKSEAEIYKNITSWKAFLPSANVHEWF GAYVQLFKRFPIIHFILNSITYALCLTAGSLIINGLAGYGFAKFKFTGNKILFSILIAMM VIPGATLIIQQFQIVKNLGLLNTILAVVLPGVSSPFYIYMFKNAFEAIPESVSEAASMEG AGSFRIFWSILLPMAKPTIATVGTLAFIGSWNDYVWPLIVLNDSSQFPLQVAITNVNVTQ PVYQNQVMAILTISTIPLVLIYILAQKYLVRGLGSAGNGDK >gi|300496358|gb|AEAT01000101.1| GENE 16 12998 - 14278 679 426 aa, chain + ## HITS:1 COG:SP1795 KEGG:ns NR:ns ## COG: SP1795 COG1621 # Protein_GI_number: 15901624 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Streptococcus pneumoniae TIGR4 # 5 327 11 337 439 282 45.0 7e-76 MTMNANQYIYHQIRTLQHDPFRPDQHFTAPVGWINDPNGLIYYKGWYHLFCQHNPYSGHW DTMHWYHARSKDLKHWEDLGEALEPDQDYEAKGGVFSGSAIVKDDRLYLVYTAHHVADDG TIDETQCLAYSDDGLNFQKHPGNPVLTAADGPSGLAAADFRDPKVFEHDGSYYLVVAGAV DGRGQVLLFKSTDLVNWEYVSAILKDQPYMGRMTECPDYFEIDGQAFLAFSTIYGDDHYS TVNIVKGEMDWEKGELTPLKHELYDAGPDFYASQSFLDKNGNRIMIPWLRSVDQADYLAD TGHAWNGMMGLPRQLSLENGELVQTPVTDWKQFGERVVNGSYHLDDFKPGKKLTLIGANG RIEINRLADNYQVKVISPIYQRKYQLSAIGDQLDLNFDNSCLELFAKKQTLSLFTFIYGI EQAIWK >gi|300496358|gb|AEAT01000101.1| GENE 17 14294 - 15406 1503 370 aa, chain + ## HITS:1 COG:SP1580 KEGG:ns NR:ns ## COG: SP1580 COG3839 # Protein_GI_number: 15901422 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pneumoniae TIGR4 # 1 367 1 375 376 520 67.0 1e-147 MVQIDLEHVYKKYDKAEKYSVTDFNLHINDEEFIVFVGPSGCGKSTTLRMIAGLEDISKG KLKIGGKVMNDIPSKDRDIAMVFQNYALYPHMSVYDNMAFGLKIRKMPKDVIDKKIHEAA QILGLEEYLKRKPADLSGGQRQRVALGRAIVRDAPIFLMDEPLSNLDAKLRVSMRAEIAK IHRKLKTTTIYVTHDQTEAMTLADRIVILKDGKIQQVGSPKEVYNNPVNVFVGGFIGSPA MNFTKVTLRGNQVIAKDGSLKLTLPEGRLKMLQDKGYAGKELIMGIRPEDIHSEQMFLET FPDNVVTAEVTVSELLGAETQLYTKIGDMEVICKVDSRDYVKPGETIQLGFDMNKAHFFD SETEANLDLK >gi|300496358|gb|AEAT01000101.1| GENE 18 15573 - 16436 1010 287 aa, chain + ## HITS:1 COG:SP1721 KEGG:ns NR:ns ## COG: SP1721 COG1940 # Protein_GI_number: 15901554 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Streptococcus pneumoniae TIGR4 # 3 287 4 295 295 287 52.0 2e-77 MTLVGSIEAGGTKFVLEAADEDGKIVAEGRIPTTSPEETLQKSVEFFKKHPVAVLSIASF GPVDINPNSKTNGYILKTPKPGWSMTDLRGTFERELGIPVYLTSDVNGSCYGEYVARGRE NEKTYLYITIGTGIGGGIIQNGHFIGYNNHPEMGHMPVVRYPGDDYEGHCPFHGACVEGM AAGPSLEGRTGIRGEKLDRSDKVFTYVQYYVAQCLFNAYLTTRPDVMVVGGSVLNEADLE GVREFFAKFNNNYVATPDLDELIVRPAVANNGSATLGNFELAKNLLK >gi|300496358|gb|AEAT01000101.1| GENE 19 17008 - 18633 2772 541 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 539 1 548 549 330 38.0 3e-90 MKKSKNILGGLAVMTSTLLAACGASSSKTAANQKLNWMEEAELSTIDVSKIMDDVSFNQV NQVMEDLYTLGNNAKVKNALASKATVSKDGKTWTFNIRKNAKWSNGQALTAKDFVYSWKR TVDPKTASEYSYLFSGIKNADAIVAGKKKASTLGIKAVGKYKLVVSLEWKIPYFKLLMAF PLFFPQNEQAVKKYGSKYGTASKYMVYNGPFVHKGWTGSNLSWKLVKNKYYWDKKDVKLT QINYSVQKSPSTAYNLYQAGKLDGTILDAQASKQLTKSKGYTIRKVANTQYLQFNLKKYS KFKSTNLRRGISMAINQSSLSKTLGATYKAATTFTSSGLTTVNGEDFTKLAASSEAKKYT SYNKQLAKQYFEKGLKEEGLSKLPFSLLASDDDTSKKLAEFVQSQLETAFGDKITVKVQS IPSKTKLNRVLAGNFECTLSGWIADYADPISFLDCETTGNSYNYGSWSNKEYDKLIAASK TSSGEARMKLLAKAENILMVNQGVTPLTQANKAWMIKSKVKGIIYNSAGAYYNFKYAYIA N >gi|300496358|gb|AEAT01000101.1| GENE 20 18695 - 19612 1193 305 aa, chain - ## HITS:1 COG:no KEGG:Balac_0120 NR:ns ## KEGG: Balac_0120 # Name: not_defined # Def: ferric reductase # Organism: B.animalis_lactis_Bl-04 # Pathway: not_defined # 1 303 126 429 431 164 32.0 4e-39 MVFMAGWLTKRVPFLAKSKQVLEEKIFKHELSIWLHRLNLLAVLLVFIHIQLIPYIRAIT PFIAWIWLATVFVFASYFISLAKSRGKSNAELLSSRLIADNVLELTLTTDQNLSDFEAGD FVFLSFPEEKGLEEPHLFSFVNLPQEEKQVVLAIKGNGDFTRQLQELKAPVKARLSPSFG RYQEAIDEAKPNQLLLIACGIGVVPLLSVIDGNPDLPTKVFYNAHTKEFLIYEEKFYYWN SRDNFQSHCQVGRFKDEEILASLPEDFSGLQVLIGGPQVMADHWLKLLKEKGLPAGQIYY EEFDW >gi|300496358|gb|AEAT01000101.1| GENE 21 19951 - 20733 618 260 aa, chain - ## HITS:1 COG:mll6620 KEGG:ns NR:ns ## COG: mll6620 COG1477 # Protein_GI_number: 13475525 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Mesorhizobium loti # 13 229 8 220 247 88 30.0 1e-17 MNVTCLNQTVEAMTIPFTVSVAVQGEASPDLTQAFTDACRKIYTELKRIEADFSAFLPDS LVSRFAEGDESILLANAEFQEVYAAALLAKEETAGAFDPYFAGKFDPTGLVKGWAVKKIF ASCLMPLAAFPEVTGLCINGGGDLQAWTRGDFRWKTGIENPAQPRLLLAIYDLASHALAS SGYTYRGQHVTLTGPADLSQVTVLAPDLIFADIWATAGLAMGETAFKEQIAQRRLSGLYA GKDGQLALFTEGDLQYVQKA >gi|300496358|gb|AEAT01000101.1| GENE 22 20742 - 21233 534 163 aa, chain - ## HITS:1 COG:mll6621 KEGG:ns NR:ns ## COG: mll6621 COG3976 # Protein_GI_number: 13475526 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mesorhizobium loti # 67 160 185 278 280 82 46.0 3e-16 MSARKVITSVLAVGTTIAIAIDGYLLFLKADQASSTASAASSSTSTAASSSASSASSSSS SASSSTSSGLKDGTYSGKSISTQWGDVQVQIKVSGGKITTVNVLKYPSDNDHSQQINDQA LPVYKKEAVEAQSADIQQVSGATVTYEGFTQSLQNAITQAKES >gi|300496358|gb|AEAT01000101.1| GENE 23 21446 - 21907 739 153 aa, chain + ## HITS:1 COG:CAC0726 KEGG:ns NR:ns ## COG: CAC0726 COG0698 # Protein_GI_number: 15894013 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Clostridium acetobutylicum # 1 148 1 149 156 196 61.0 2e-50 MKIAMANDHAGTRLKNEIKAYLEEEGYEVVDFGAGNEEFCDLSDFVYPASLAVAKGECDR GIFVDGVGYGSALIANKINGIYAAVCQDPFCAKLARQHTDSNVLCLGAKIIGDMMAGEIV KTWLNTDPLMEEKYRRRVDKVKAINDKHCVPVK >gi|300496358|gb|AEAT01000101.1| GENE 24 22061 - 22333 178 90 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] # 1 90 4 93 96 73 35 2e-12 MNKTELVSVVSEKTEFSKKESAQIVDALFASIEEALAKGEKVQLIGFGTFEVRERAARKG RNPQTGAEIEIPASKVPAFKPGKALKDAVK >gi|300496358|gb|AEAT01000101.1| GENE 25 22491 - 23618 1454 375 aa, chain + ## HITS:1 COG:SA0909 KEGG:ns NR:ns ## COG: SA0909 COG1680 # Protein_GI_number: 15926643 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Staphylococcus aureus N315 # 43 369 79 388 397 90 25.0 4e-18 MNFEDFFLKKSAKTAGKLALAASLLLPALAPATVQAEATKSDVNRVMRDNHLAGSVLLVQ NGSVKTVNYGYAWFGRWMKNGSYNVTYPAASLQKVVTGAMLVQIMNEKNHTKQQFSQYTK ISRWYPKLKNARYVTVGNLLTHTSGYRTPGLESNRRKNLSENKAINWVSQKINGSWQYQT GSFNYNNANYILLAGIICKLTGHSYAYNFKHRIVQPLGLAHTSLRHDIPWTRSQAVSYAY LWQRKYQRPVSLPKSVASQMPGAGNMCTTPIEYYEIMLALQNGAILSQSDFNYLTHLKAR KTTYSGGMYMKRDGKVKSAFGAIGDEHYGNYVQLTADNRNGIIMFVNERSQTEQQLKGLA FGLLQKIQPGTFSLN >gi|300496358|gb|AEAT01000101.1| GENE 26 23718 - 24836 1303 372 aa, chain + ## HITS:1 COG:SA0909 KEGG:ns NR:ns ## COG: SA0909 COG1680 # Protein_GI_number: 15926643 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Staphylococcus aureus N315 # 40 363 79 385 397 99 28.0 1e-20 MFKKGKKLIVALLVLVAALAFWPEETAPDLVTAADMHVFVEKLFKKKHVTGSVAIVQNGH VQVVNYGLANAKQKVKNGASQVVYPAASMQKEVTGAMIMQLMEEKKGSSSAFSQNTKISR WYPALRNSKKISVGNLLSHTSGLQIPEVEADRHINYSEDQAVNWIVNRANQLPQDKVGSY HYSDVNYVLLAGIIKKVSHKSYAWNFKKRVVQRLGLKSTYVSSQLPKNKMLAVSYTYKHG KNYQQAATLEKTRLSQLVGAGNMLTTASDYYLIQEALGTGQFLSPSAFHKLTHLKSKINQ YSGGVYLKKGEKVKLAYGAIGSAHYAAYFQLTADNKNGIILLLNQRSFGEDKVKDVGYQI LKKIRFATFSKT >gi|300496358|gb|AEAT01000101.1| GENE 27 24959 - 25906 1053 315 aa, chain - ## HITS:1 COG:mll9166 KEGG:ns NR:ns ## COG: mll9166 COG1472 # Protein_GI_number: 13488104 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Mesorhizobium loti # 4 275 46 333 394 117 32.0 2e-26 MSSLSQKLASLFLIDSTGDFTENLRLLEQYQPAGLLLFAKDLAGLSEKAVKERLAIYRQA RPGLLLAIDQEGGLVSRLSALYPNRSYPSQAELLKKGADFFLAESQKTALELKDLGINLN FAPVADLSLDPASFIYSRTLQAGAEETGPAIAAFIKLYRQLGVASCAKHFPGYGDAGDTH QAPAKDLRSLKEAQLDLLPFKAAIAAGVPTIMVAHLEVACYSPGPASLSPEIYRLLKEDL HYSGVAITDDLAMAAARESSCPELLALKAGADLLLGGKLENLLILEAAAESGELPKERIK DALVRVQTLQDDYSL >gi|300496358|gb|AEAT01000101.1| GENE 28 26147 - 29713 5800 1188 aa, chain + ## HITS:1 COG:BS_yvfO KEGG:ns NR:ns ## COG: BS_yvfO COG3867 # Protein_GI_number: 16080465 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinogalactan endo-1,4-beta-galactosidase # Organism: Bacillus subtilis # 500 927 32 420 425 232 37.0 3e-60 MKKRQIKHFKSKKIVAANLALLATATGLAYANPAKADVTDSQASDQQTANTQAAQAEQTQ AVQSTDTQAEQTAADTTKTADTATDSKISANTADTAATTADTTKTTAATTTTKTAAANTV QTKTSAVTATKAATTTTTTTTATKSAFKTTSGKTYYYDANGQVVKNQVFTVKGKQYYADA NGQIAKSTTKKVNGITATFDNTGAISNNLDFGQLLRDQIEFSAASKLKKAVKYDWTETEN KYQESATHEMAQLLAQGDVKNDNDLIATLMENNSSMSGKVLASLTLNVGQSGASASQVAA ALVSKLGNTDATGSVIGAGYYNGVASALIYKVEEVKKAAQAVSKIDPSVSAVYSDAGKVT NPVTSKMSDEDARTLTDGVSSALLTGKAGTAISQEVLQTIFAGLAGDATAFEGSSLYYDA NGKAYHYQYWLSGKDSAEKLANLLKANTGVKYGDALKAVYTATLVAGTGTNTDAVDETPT SKKTADEITAAYQTGSETGLKYENVKVEKIPGMTDDMIRGVDISTYQALVNAGVKFYDFD GKEASLIKVLADAGVNWVRLRIWNDPYNADGMGYGGGNTDEASVIKMASEAKKYGIKVLL DFHYSDFWVDPAKQILPKAWKDLSVNALDESIKLYTEKVLTDLRNAGASADMVQVGNEIT NGAFGLYTDRDHGGNWETLWKSADGDQVAEYLATAAKAVRNAAPQAKIALQLETPNIYKY RTIMTVFKKHGIDYDYLGTSYYPFWSTGNDNGTYNGQSLGKGANTPNNLLAVEKMAKEEF GKTTVILETGWLNNLNDSDGTGNSIGQMPTMPDGISYTADPQGQVDAMADMYKAIIAGGS VGAFYWEPAQIAVKAGWNNWNYNKEMSNVYGTGWASKYAIGYAPENVMYYEGKETWGGST WDNVALFDDHGYPLQSLMMYRGFLTGYESAENTASTVTPKLSALYGADQAGLKAENQLKV GQDLTLTNYLDGAVSKYLNGVKGTKISEASLKALYAGLTDGLKSDQFKDEAGNNYHYEYW LEGNTSAEKLANFLKANEGATYGSPITVNYTATLVKDKKVIEKASSTVEATATTVWGLDN ATIDSPMTVGQKLSAEDTALIEKAAAQYLTGEKGTEISADNFTKLAAVINEGIASSKEYQ VKFTDATSVYHYVYYLDGTDLAALNKGAKYGDPIKINVSASLKWVKNL >gi|300496358|gb|AEAT01000101.1| GENE 29 30189 - 30422 380 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300812650|ref|ZP_07093062.1| ## NR: gi|300812650|ref|ZP_07093062.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 1 77 1 77 77 94 100.0 2e-18 QTGYNSFISASNVDGTTRTLKKNAYVYKKSKGKAVRYKNSVLKQNSQQQTYGSAVSIKGK KYYIIGVGKYVAKSDFK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:35:55 2011 Seq name: gi|300496347|gb|AEAT01000102.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00022, whole genome shotgun sequence Length of sequence - 13688 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 6, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 3/0.000 - CDS 290 - 1240 1298 ## COG3481 Predicted HD-superfamily hydrolase 2 1 Op 2 5/0.000 - CDS 1233 - 3659 3284 ## COG4717 Uncharacterized conserved protein 3 1 Op 3 . - CDS 3656 - 4861 1375 ## COG0420 DNA repair exonuclease 4 1 Op 4 . - CDS 4864 - 5217 698 ## Ldb1541 hypothetical protein 5 1 Op 5 . - CDS 5259 - 7346 3196 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 7386 - 7445 5.7 6 2 Tu 1 . + CDS 7487 - 8335 952 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit + Term 8366 - 8410 11.0 - Term 8350 - 8401 7.5 7 3 Tu 1 . - CDS 8430 - 9341 1211 ## COG0191 Fructose/tagatose bisphosphate aldolase - Prom 9382 - 9441 4.4 8 4 Tu 1 . - CDS 9467 - 10171 1269 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 10256 - 10315 5.6 - Term 10301 - 10335 4.6 9 5 Tu 1 . - CDS 10345 - 10674 195 ## LDBND_1480 sortase family protein 10 6 Tu 1 . - CDS 10815 - 13688 1938 ## LDBND_1481 dextransucrase Predicted protein(s) >gi|300496347|gb|AEAT01000102.1| GENE 1 290 - 1240 1298 316 aa, chain - ## HITS:1 COG:lin2323 KEGG:ns NR:ns ## COG: lin2323 COG3481 # Protein_GI_number: 16801387 # Func_class: R General function prediction only # Function: Predicted HD-superfamily hydrolase # Organism: Listeria innocua # 1 315 1 313 313 266 43.0 3e-71 MLKRLLDYNEGEEFDLVLMVKNSQLRQDKRGKHYLLMQLADSSGSIRANYWQAQAEDASR FNAGTVVEASGMIEDYHNHDQIKLFSIHPVSPDDQVDLSQLVATAPEKPAEMEKEIKDFV AQIDNKNWHDLVDFLLKKWSSRFFAYPAGKSNHHAYKGGLAFHTLTMLKDARGLADNYPA VNRSLLYAGCILHDMGKVLELSGPVATQYTAEGNLVGHLVLIDEQLMLAAQELKIDLASE DLLLLRHMVLSHHGRYEYGSPKLPALLEAELLHRIDDLDAAVNAITTELSTTKPGEFTPP LMSQDGRRYYRPRQER >gi|300496347|gb|AEAT01000102.1| GENE 2 1233 - 3659 3284 808 aa, chain - ## HITS:1 COG:SA1661 KEGG:ns NR:ns ## COG: SA1661 COG4717 # Protein_GI_number: 15927417 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 384 1 373 978 85 25.0 3e-16 MRLKQIQIYNFGQFSQETFDLPEGNLAAFFGGNEAGKSTTVAFIKQILFGFNLKNTSSVF FEDYEPLTKSYPMGGQLVFTSDAGEYVLERTWSKGDKSKTGAVKVLLNGQEVPASLFYDQ IQNIDGSFYAESFIFNEDLLRQVSSLSEGEILENIYYLGAAQSSQLLAIRADFDKEAKGL FKPSGKKAPVNQDLLKLAEQRDKVAADGQEFDAYQQLEGQRLAEEQAAKKLEKEVQEISS QLSMLEKQLEQVQNYQTYLDLKKQVSPVAFDQELYQKALELNAQIKALKAAIKEEKAAVD PALLAKRKDQVRAWRQELGQISQSLEMLKQQVKQLEEKQASLLELTPHLEQVADLSMDQF QQMQADWEESQKAEAAPKTLPPYVGLIVAVIGLALIGQNRILAILLILAGAALAAYAYFK KPAKGPDKEGAFKEKYGIDASVKVDSLLAPYRDLAINRRDLANSQAELAQKEKQAADLAR QLGLDGSDLTAVSQQLGRLEEQVEAENAALRASQEVKAANLNYQKQISTLTEQLLAIYQT AGVENLAAYQALAQKLQEQKALSAQITALKNNLGDQLAAFEENGLDSSKLLGQKQELEKE LADKQKAVSARQQEMANLLAEEKRYASSSQVAEDKQTLAEIADSFRRDSQDYLASLLAGE VIGRTLDLASNDRFPKMLKLAQDYLEILTGGRYREILLPAKLSNKTPLKVVRKDKKKIPL AYLSRGTQEQLYFALKLAFVMQIKDKIDLPVLIDDSFVNFDGPRTGYIVDMLKKMSEDKQ ILVFTAREDLAEAVSAAPIRYRKKEQDA >gi|300496347|gb|AEAT01000102.1| GENE 3 3656 - 4861 1375 401 aa, chain - ## HITS:1 COG:lin2325 KEGG:ns NR:ns ## COG: lin2325 COG0420 # Protein_GI_number: 16801389 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Listeria innocua # 1 274 4 277 411 196 37.0 7e-50 MKFIHLADAHLDSPFRGLSFLPNREYAEIRQSAAQSLTRIVDLALKEQVDLVLIAGDTFD SNKPSPASQLFLARQVKRLTDAQIQVVMIFGNHDYMTRQDLLVENSPYFCLLGDQEKVAR EFFKTKTGFAYNVTGFSYSQNHIEADLLDQFPEKEGYTIGLMHAAQRAASGNVYAPFDLS QMKELNYDYFALGHIHARQILSEKPLIVYPGNIQGRDVGELGEKGCYLAEVDETSGQTSL TFVQTAPITWKQLTLELDQAIDKSSLHAKALELLQENIQGKTYFSLKISGSEYLTSEEID LWQDQEAWAGLSAALAPAQLVDVRLSVRGLVSLNNSDREALAAAEAEVLTDEKIQQLAAS WAKKDPYARRLLEDGEFRGQVRDLVAVKLARRLQAMTGGEE >gi|300496347|gb|AEAT01000102.1| GENE 4 4864 - 5217 698 117 aa, chain - ## HITS:1 COG:no KEGG:Ldb1541 NR:ns ## KEGG: Ldb1541 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 117 1 117 117 161 97.0 6e-39 MVNIYDTANQLANDLRGTQQFLALKEAMDAVKADEGSLALFKELDAAQMEIMEAQQTGME LTEEQQGHFKSLNERVSQNTTLQSMLLAEQAVYTLLNDVQKNIGQPLSEAYEDLRKA >gi|300496347|gb|AEAT01000102.1| GENE 5 5259 - 7346 3196 695 aa, chain - ## HITS:1 COG:lin2331 KEGG:ns NR:ns ## COG: lin2331 COG0744 # Protein_GI_number: 16801394 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Listeria innocua # 20 672 26 678 714 548 47.0 1e-155 MENRRKARKQMNDSQPKKGLWRWLKRINYRFQLLRWLILIVLSLFLAVSSYYTFKVKTAN LSNLQASLAKTTVIYDQNGKKAGSVSSGKGTYVSLSKISPNVQKAVVATEDRTFWTNIGI SPKGILRAAVSYVIHGGNIAGGGSTITQQLVKNSILTQQQTLSRKVEEMFYAIQVTKVYS KKQIMAMYLNNAYFGNGVYGVQDASRKYFGKNASQLTVAEGATLAGILRNPSYYNPIDSL SHSVSRRNVILQLMVDNKSISQTTANKAKKEGMNLVDAYKATRGYKYPYYFDAVISEAIS KYGLSENEIMSKGLKIYTTLDQNYQKSMQASFKNKYNFPVNPAGTARAQGASVAMDPKTG AVKALVGGRGKHVFRGYNRATQMQRQPGSAIKPLAVYAPALENGYHYDSDLSNKRQKFGK NGYEPVNVDNQYSTTIPMYQALAQSKNVPAVWLLNKIGVSTGVSYLKKFGITVSKSDQNL ALALGGVSTGVSPLQMARAYSAFANSGKLPDSSYMITKITDASGNVIAENNNTGTSQIIS ADTAKEMTQMLLSVFTSGTAVNAKPAGYSVAGKTGSTEVSFAYGTKDQWIVGYTPDVVAA TWVGFDKTDKNHYMQGISETGITTLYKDEMTRILPYSKQTSFTVQSADSMAQSNGTSSSS SSSSDWSKKLKESISNGVKNAESTIQSWYNKITGK >gi|300496347|gb|AEAT01000102.1| GENE 6 7487 - 8335 952 282 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 1 282 1 281 285 371 61 1e-102 MIYHFSLIYPADRPSVSVSDLLRQLLIPRKWRHYLRTERQVLVNGQYRSFNQLIKGNEKV DLYLDQVESLQGDYPASGKMPKVVYEDENVLVIDKPKGQKTHPNQGENGTALNDCASYLG YSPYIVHRLDMLTGGLLLVAKNPAVVPILNRQLTSKTLRRDYLATVDLNKEIPDQGTIDL PIGQDPADQRKRQVRADGLRAVSHFQVLEKDEEKKQAKLLVTLETGRTHQIRVHLSASGW PIVGDPLYNPNFAGEDLALTGWQLTFVKPYSFNQVAVRLDKK >gi|300496347|gb|AEAT01000102.1| GENE 7 8430 - 9341 1211 303 aa, chain - ## HITS:1 COG:SPy1889 KEGG:ns NR:ns ## COG: SPy1889 COG0191 # Protein_GI_number: 15675705 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Streptococcus pyogenes M1 GAS # 5 283 4 289 293 310 53.0 2e-84 MAYFVNGNDIFKKARKEHYAVGAYNTNNLEWTRALLRGAEETRTPLLIQVSTGAAKYMGG YKLVKDLVEDSMDAMNISVPVILNLDHGDYDSAIECIKLGYSSVMFDGHALPTEENLAKT KEIIKLAHERGISVEAEIGKIGENQGAGELASVEDAKAFVAAGVDKLACGIGNIHGVYPE GWSGLNFDRLKEIAEAVPETPLVLHGGSGIPQDQIEKAISLGISKININTEFQLAFQEAT RKYIEEGKDQDKSKKGYDPRKLLLPGTEAITDSMKEMISWMGTPSIDDKEADASFDRSSL NEE >gi|300496347|gb|AEAT01000102.1| GENE 8 9467 - 10171 1269 234 aa, chain - ## HITS:1 COG:BS_yciB KEGG:ns NR:ns ## COG: BS_yciB COG1376 # Protein_GI_number: 16077404 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 19 231 5 193 194 95 30.0 9e-20 MNKAHKRIGMLLIAIIACLMIIPVFEPLPEVGGKSKVQEHPPKKEQVAKKENDRPYPDPS DMRPMTGHYYLYSSETKRKYPNLRKYKDVWIRVSILGARAYVMSGKKVIYTMYASPGAIK KNGESRTPVGNYRIQEEAGEVFYNNDGVGARYCVSYHQHGVYLFHSVPINNFNSGVKAGK YHYGYKGGAHLTTLGKKPDSHGCVRLSVSDAKWIYEQRLNGGLPVGSKVVLKMR >gi|300496347|gb|AEAT01000102.1| GENE 9 10345 - 10674 195 109 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1480 NR:ns ## KEGG: LDBND_1480 # Name: not_defined # Def: sortase family protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 109 1 109 109 211 97.0 9e-54 MPVASKWRFSQLEVSPATYTGTAKDRDWTVAGHNFVNHFGRLNQLEVGDKVYFEAAAGQR YVYQVQKMEVLQPTAISKMVQSKYDLSLFTCTYDGTTRFTVRFRLLQIK >gi|300496347|gb|AEAT01000102.1| GENE 10 10815 - 13688 1938 957 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1481 NR:ns ## KEGG: LDBND_1481 # Name: not_defined # Def: dextransucrase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 2 957 295 1250 1294 1715 99.0 0 DYGNNKLEYYGKDHVQYRNRYASQGNNWYYFGSNGDAVTGLRHYGNNKLEYYGADHVQYR NRYYQEGNKFYYFGGNGDAMVTIRGAIENGKFNIYDIRTNKLIKSLDAGTWENLAYSMDA NSINNVDGYLSYSGWYRPIGTSQDGKTWYKTGAGDWRPILMYVWPNKDVQAQFIKYFVNH GYENANYGLTKVLVANLNKGTDATVLNTAAQNLRYVIEQSIATNKGTGKLANDINGFAAT VPELSASSELSVQSIPNYKPNESGTVDNDQVIFVNDADSKYRLMNRTINNQTGNDNSDNS PELLVGNDIDNSNPVVQAENLNWEYFLLNYGKLMGYNQDGNFDGFRVDAADNIDADVFDQ MGQLMNDMYHMKGNPQNANNHLSYNEGYHSGAARMLNKKGNPQLYMDSGEFYTLEKVLGR ANNRDNISDLVTNSIVNRQNDVTENEATPNWSFVTNHDQRKNLINRLIIKDHPGIAYIMG SAYKAEYANQAWQEFYADQKKTDKQYAQYNVPAQYAILLSNKDTVPQIYYGDLYNETAQY MQEKSIYYDAITTLMKARKQFVSGGQTMTKLSDNLIASVRYGKGVANANSEGTDSLSRTS GMAVIVGNNPQMAEQTISINMGRAHANEQYRNLLDTTDNGLTYNADGAENPETLTTDDNG ILKVTVKGYSNPYVSGYLGVWVPVVSGNQDVTTNAATVSADSNKIFESNAALDSHMIYED FSLYQPEPTSTENHAYNIIAQNAALFNNLGITDFWMAPAYTPFSMSRYNEGYSMTDRYNL GTDANPTKYGSGEELANAIAALHSAGLKVQEDIVMNQMIGFSGQEAVTVTRTNNRGIQIY VNGKTYANQIYFAYTTGGGNGQETYGGKYLSELQSKYPDLFTTRAISTGVAPDPTTRITQ WSAKYQNGTSLQNIGIGLAVKLPNGDYAYLNGGNNDKFKTTLPEQMGSIGYYVQHEL Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:36:18 2011 Seq name: gi|300496332|gb|AEAT01000103.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00078, whole genome shotgun sequence Length of sequence - 14940 bp Number of predicted genes - 15, with homology - 14 Number of transcription units - 7, operones - 3 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 40 - 99 5.3 1 1 Tu 1 . + CDS 304 - 1395 816 ## COG0438 Glycosyltransferase + Term 1411 - 1449 4.8 - Term 1399 - 1437 8.6 2 2 Tu 1 . - CDS 1487 - 2041 256 ## COG3436 Transposase and inactivated derivatives - Prom 2067 - 2126 2.9 + Prom 2932 - 2991 3.8 3 3 Op 1 5/0.000 + CDS 3232 - 4974 1099 ## COG1401 GTPase subunit of restriction endonuclease 4 3 Op 2 . + CDS 4955 - 6034 701 ## COG4268 McrBC 5-methylcytosine restriction system component 5 3 Op 3 . + CDS 6079 - 6729 633 ## LDBND_1831 hypothetical protein 6 3 Op 4 . + CDS 6729 - 7604 994 ## Ldb1976 hypothetical protein 7 4 Tu 1 . - CDS 7692 - 7970 188 ## 8 5 Op 1 . + CDS 8011 - 8544 450 ## LDBND_1829 virulence factor MviN protein 9 5 Op 2 . + CDS 8634 - 9068 118 ## LDBND_1828 lps biosynthesis related flippase 10 5 Op 3 . + CDS 9129 - 9833 1035 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) + Term 9851 - 9894 5.5 + Prom 9835 - 9894 4.0 11 6 Tu 1 . + CDS 9932 - 11104 1644 ## COG0500 SAM-dependent methyltransferases + Term 11107 - 11140 1.6 + Prom 11125 - 11184 7.0 12 7 Op 1 16/0.000 + CDS 11230 - 12267 1695 ## COG1088 dTDP-D-glucose 4,6-dehydratase 13 7 Op 2 13/0.000 + CDS 12287 - 13171 1247 ## COG1209 dTDP-glucose pyrophosphorylase 14 7 Op 3 9/0.000 + CDS 13198 - 13806 967 ## COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 15 7 Op 4 . + CDS 13820 - 14794 1613 ## COG1091 dTDP-4-dehydrorhamnose reductase + Term 14806 - 14844 5.3 Predicted protein(s) >gi|300496332|gb|AEAT01000103.1| GENE 1 304 - 1395 816 363 aa, chain + ## HITS:1 COG:SP0353 KEGG:ns NR:ns ## COG: SP0353 COG0438 # Protein_GI_number: 15900282 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 356 2 365 372 162 31.0 1e-39 MKILLVSTNNLSDNGISTFIINNAKLLAKKKNIHVDVLAPNEVAKDIKDDLKKNEINVFE IHDRNSNPKQYFRRLISLLKHENYDVVHVNGSSNIMSIELAAAYFAGVKVRIAHSHNTVT EHERLHKLLHVPFNIFVNCRVACNEAAGKWLFNNKQFIVVDNGIFLDKYRFNTTVRAQMR KQLGLSDDDILLGHVGGFNEQKNQAFLLNVMKKLDSKYKLILVGQGGMFDQVKKQTEEMD LGDRVIFTGSVHNVPDYLSAMDVFVLPSRFEGQPFVVVEASANGLPIILSDKISRESNLT SKLEFVSLDPKAWIEAIEKADLPSRDDESDDNIKRLAAKGYDAVKNADDLYNLYAEKLKV SAQ >gi|300496332|gb|AEAT01000103.1| GENE 2 1487 - 2041 256 184 aa, chain - ## HITS:1 COG:SPy0131 KEGG:ns NR:ns ## COG: SPy0131 COG3436 # Protein_GI_number: 15674346 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 2 184 264 440 450 192 53.0 2e-49 MAHARRKFYDSLPKDKARESDSTSVANQGIHYCDQMFSLERTWGDLSAEERYEKRQSELK PLLEKFPDWCSKKSISVLPSGKLGTAFQYCIKHMGKFMNDLKDGRLELSNNRAERAVKEI VMGRKNWLFSQSSTGAKSMAIIMSILETAKQNGLDQFKYINYLLDKLPNEMSLLDNQRLE AYLP >gi|300496332|gb|AEAT01000103.1| GENE 3 3232 - 4974 1099 580 aa, chain + ## HITS:1 COG:mcrB KEGG:ns NR:ns ## COG: mcrB COG1401 # Protein_GI_number: 16132167 # Func_class: V Defense mechanisms # Function: GTPase subunit of restriction endonuclease # Organism: Escherichia coli K12 # 297 574 173 461 465 262 47.0 1e-69 MIDLFDESQDTVNRIKNFEQQANELLDEDYALDEETVSMLLCLNSPDKYSVFNLRGCQRL ASWLKLDYEFEQQATVKNIQNWLILVQEIIERLSDNQLMLDEYMYYLEWDTEEEQNYLHY LCDKFGNDFQWSAEKDSQLLVLASDICNYLAQHRNLTPAIGQKQYWWLNANPSFWNLSDL KVGEERYYTLYSESGHKRRVFQHFLDAKVGDKIIGYESYPSRNVVALMEISRASDGEAVF FKKIEEFEHPVAYKDLRQCPELKDLEVFISPTGSLFKVTEDEFNFIMDKVREHNPVAYTK ENFLSEVYMPEADYDRVSALLKYKKNIILQGAPGVGKTFAAKRLAYAMMGQKKDENIELI QFHQSYTYEDFMMGYKPTEQGFELRYGSFYRFCKRAAEHPDEPFFCIIDEINRGNLSKIF GELLMLLEKDYRDQPITLAYTDEPFAVPSNVYLIGMMNTADRSLSIIDYALRRRFSFFDM KPAFESTGFMQQQLIAGNVTFDRLINRIEELNDEISRDLSLGPGFCMGHSYFSNPEGEWT IDKLRLIVDYDILPMLREYWFDDQDKLEHWESALHEVLND >gi|300496332|gb|AEAT01000103.1| GENE 4 4955 - 6034 701 359 aa, chain + ## HITS:1 COG:mcrC KEGG:ns NR:ns ## COG: mcrC COG4268 # Protein_GI_number: 16132166 # Func_class: V Defense mechanisms # Function: McrBC 5-methylcytosine restriction system component # Organism: Escherichia coli K12 # 11 355 6 347 348 145 27.0 1e-34 MRFSMIKDKSIFIKNVYYMLSYAFGNLHETEYKNIAKESFDNLDNLFAAILAKGISKQLK QGLYREYVACHDNLPTVRGKIDLVETVRNQLACRKLVACDFDELSANNLYNQILKSTALQ LSRSKKVDKKYLGQFKKELVFFGEIDMVDLSKVPWHKLRFHRYNKSYRLLLGLCELLTEG KIMTTEQGIVRLTDFADDQRMSHLYEKFILEYYVQEYGQKYRGFTAKAAMIPWQLDDGNK NLLPVMKSDVLLSYGGRKLVIDAKYYAHSLQSNFDTKTIHSANLYQIFAYVKNLAVMRRD DMVAGMLLYARTDEEIVPDEDYQMSGNRISVKTLDLGQEFPVIKEQLDKIVTEYFTELG >gi|300496332|gb|AEAT01000103.1| GENE 5 6079 - 6729 633 216 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1831 NR:ns ## KEGG: LDBND_1831 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 19 216 83 279 279 219 94.0 8e-56 MCAEADKVLGTGKVPGDRKKEHKLKVQKATAWLLLALSFVTVGVGSVAAEEYSPRTKVVV KYTGAKEYQQVKEKNSALISAKKAALLAYAPLAKKVKKLEAQEKAEKEAAAKAKQEQEKQ AAEAKKEAEAARKAAEKQAAAASSASDSNTDDYSADTSSDQRGDMNTADFQKIVGNVNSK IYHVPGQAGYRMNSSNAVYFNSEEEAQRAGYRRAKR >gi|300496332|gb|AEAT01000103.1| GENE 6 6729 - 7604 994 291 aa, chain + ## HITS:1 COG:no KEGG:Ldb1976 NR:ns ## KEGG: Ldb1976 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 291 1 291 291 504 97.0 1e-141 MKKKRIIFAAGAVALLFAVTSTKPVDSQNYPKITVKTKRVNKYKDKIGDYESDNLTLEAE TDLIKGKTEEAKEKLAKKPGSKTSQTTSTKETASAKSKQTDLASLTYSGQLSTQVNNNQP DFSQSDLSTSRGAWQTNGNLDSLNRATTANAMLNQSLMPTAKREPLHWDPTGWHNKRISS GWLYNRSHLIGYQLTGQNNNPKNLITGTEEMNVSGMLPYENEVADYLKESSNNYVRYRVK PIFKGDELLARGVQMEAKSVGSNAVSFNVYVFNVQPGVVLNYSDGTSRVQN >gi|300496332|gb|AEAT01000103.1| GENE 7 7692 - 7970 188 92 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSFAMMGSVEILGNLFSDLKNLSSASLGYAFIVGGVYLIVIYLIILMLFIGIKKLFADGE YQIDFKFCILLSIVSIIFFTVGIVLLNTLHLT >gi|300496332|gb|AEAT01000103.1| GENE 8 8011 - 8544 450 177 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1829 NR:ns ## KEGG: LDBND_1829 # Name: not_defined # Def: virulence factor MviN protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 19 177 1 159 159 262 95.0 4e-69 MLFIFFCAFLEFLTALVLLAYLGLAACLLFSSKLREYGPLIWTLSFGIIFTTLGCEWLYA IHEGYGYLALRSICFQVLSLILLLTYVKDESDLLLYAWTTVAGSAGANLINFLRLRKYCT WSLTWRFSWQQHLLPILVLFANSLVNLLYVSADVAQLGVMTSDYYVGLYSVASKVRP >gi|300496332|gb|AEAT01000103.1| GENE 9 8634 - 9068 118 144 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1828 NR:ns ## KEGG: LDBND_1828 # Name: not_defined # Def: lps biosynthesis related flippase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 6 120 32 146 190 148 92.0 5e-35 MARQIADLDFAPAAGAMKLLGLALVFSLLGWFYMAAVLVPARQERAALLAISIASVVNVS LNFLLIPAFKEAGAALATLLADLVTCLACYFLAKKSARLLPSGKKLASSLLDCLYVTGSC WNLSVEVDGSKKGEIFAQNRQKAL >gi|300496332|gb|AEAT01000103.1| GENE 10 9129 - 9833 1035 234 aa, chain + ## HITS:1 COG:lin1131 KEGG:ns NR:ns ## COG: lin1131 COG0580 # Protein_GI_number: 16800200 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Listeria innocua # 1 233 1 233 234 241 58.0 9e-64 MNGFLGEFLGTMILIVLGAGCGAGISLNKAYAKGQGWLFVTLAWGMAVTFGVYVAGQFGS QGHLNPAVTIGFAAFGFFPWSQVMPYLLGQFLGAFVGAALVILHYYPHFKATKADEGNSV GIFATGPAINNPVFNFLSETIATFVFIFTLLNLGNFTQGLKPLIVGFLIMVVGQALGPTT GFALNPARDFSPRLAYAILPVPNKGGANWAYAWVPVLGPIAGGLLASGLQALLK >gi|300496332|gb|AEAT01000103.1| GENE 11 9932 - 11104 1644 390 aa, chain + ## HITS:1 COG:VNG0503C KEGG:ns NR:ns ## COG: VNG0503C COG0500 # Protein_GI_number: 15789731 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Halobacterium sp. NRC-1 # 136 389 10 257 262 97 29.0 6e-20 MTDCYTSGEFAKRAHVSVRTIRYYDQQNLLKPSARSKGGARRYSDADFAKLQQILLLKYL GFSLGEVRGLTLGASDRRRLLDSLQIQRRLVEERIEEMTAVEAAIDSTTQTLEAGKPVDW SRMLELLHRSTMTQSLKAQYQNATNISARIRLHRDYSMNKEGWFPWLFRQLDLTPGLKIL EIGCGNGELWATSHDRLPEDCQVILTDISEGMLADAKKEIGEDSRFSYDRCDAAHLPFAD EEFDLVVANHMLFYCDDIPQVLKEVRRVLKKGGRFCASTYSKRHMHEITDLVQEFNSQIV LSSVNLYDRFGLDNGEEILAPFFAQVTCQRYEDAIELGEAEPVISYILSCHGNQNALLLD RYQEFKQFVEDEVAGGFHITKDAGTFICRK >gi|300496332|gb|AEAT01000103.1| GENE 12 11230 - 12267 1695 345 aa, chain + ## HITS:1 COG:MTH1789 KEGG:ns NR:ns ## COG: MTH1789 COG1088 # Protein_GI_number: 15679777 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Methanothermobacter thermautotrophicus # 2 339 3 333 336 436 61.0 1e-122 MKIIVTGGAGFIGSNFVFYMMKKHPDYKIICLDKLTYAGNLSTLKDVMDKPNFRFVKLDI CDREGVYKLFEEEHPDVVVNFAAESHVDRSIENPEIFLQTNIIGTSVLMDACRKYGIKRY HQVSTDEVYGDLPLDRPDLFFHEDTPLHTSSPYSSSKASADLLVGAYGRTYGLPVTISRC SNNYGPYQFPEKLIPLMIQRALDDKPLPVYGGGQNVRDWLYVEDHCKAIDLILEKGTVGE VYNIGGHNEMHNIDIVKLICDYLDKPYSLIEHVTDRKGHDQRYAIDPTKIHDELGWLPET MFKDGIKKTIQWYLDNKEWWENIISGDYQNYYQEMYGKKQVLDEK >gi|300496332|gb|AEAT01000103.1| GENE 13 12287 - 13171 1247 294 aa, chain + ## HITS:1 COG:rfbA KEGG:ns NR:ns ## COG: rfbA COG1209 # Protein_GI_number: 16129979 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Escherichia coli K12 # 2 284 5 285 293 391 67.0 1e-109 MKGIILAGGSGTRLYPLTLVTSKQLLPVYDKPMIYYPLSTLMLAGIKDILIISTPADTPR FKELLGDGSQFGVKLSYKVQPSPDGLAQAFTLGEDFINGEPCAMVLGDNIFYGNGFTDML ENAAKNAEAGRATVFGYYVNDPERFGVVEFDKDGHAISIEEKPAQPKSNYAVTGLYFYPA GVSERAAQVKPSARGEVEITSLNEMYLNDNTLDVQLLGRGYAWLDTGTMQSLVDASNFVK MVEERTGVSISAPEEIAYVHGWIDEDKLMEAAKHYGKSPYGQHLKAVAEGKLKY >gi|300496332|gb|AEAT01000103.1| GENE 14 13198 - 13806 967 202 aa, chain + ## HITS:1 COG:CAC2331 KEGG:ns NR:ns ## COG: CAC2331 COG1898 # Protein_GI_number: 15895598 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes # Organism: Clostridium acetobutylicum # 1 193 1 175 185 226 60.0 3e-59 MGQIKVEKNVGGIEGLAVITPAVHGDDRGYFMETYNENDMKEAGFDINFVQDNQSSSTKG VLRGLHFQKHFPQCKLVRAVRGDVFDVAVDLRSDSKTYGKWYGVELTAENKKQFLIPEGF AHGFLVLSDVAEFCYKVNDFWHPNDEGGMAWNDPEIGIEWPQLVGEYPGSADASGYALED GTKLTLSDRDQKWLGIKDTFKF >gi|300496332|gb|AEAT01000103.1| GENE 15 13820 - 14794 1613 324 aa, chain + ## HITS:1 COG:CAC2315 KEGG:ns NR:ns ## COG: CAC2315 COG1091 # Protein_GI_number: 15895582 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose reductase # Organism: Clostridium acetobutylicum # 1 318 1 279 280 204 38.0 1e-52 MKVFVTGVNGQLGHDVMNELAKRGYEGVGSDLAPEYSGLADGSSVTTAPYVSLDITNAEG VKQAITEVNPDVIVHCAAWTAVDLAEDDDKVAAVRKVNTDGTQNIANVAKELDVPMVYIS TDYVFDGQGTTPWDPDFKGYKPMNVYGETKLGGELAVSETLDKYFIVRIAWVFGLNGKNF IKTMLNVGKTHDEVKVVSDQIGTPTYTLDLARLLVDMIETDKYGYYHATNAELPETASGY DENGTKTGYISWYDFTKEIYRQAGYKTKVTPVTTKEYGLSKAVRPFNSRLDKSKLEKNGF KPLPTWPDAVHRYLEALKADGFFD Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:36:47 2011 Seq name: gi|300496314|gb|AEAT01000104.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00105, whole genome shotgun sequence Length of sequence - 22083 bp Number of predicted genes - 17, with homology - 17 Number of transcription units - 9, operones - 4 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 46 - 1956 1794 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family - Prom 1977 - 2036 4.8 2 1 Op 2 . - CDS 2042 - 3607 2352 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 3 1 Op 3 . - CDS 3675 - 3866 327 ## PROTEIN SUPPORTED gi|104773890|ref|YP_618870.1| 50S ribosomal protein L32 - Prom 3891 - 3950 3.0 4 2 Op 1 4/0.000 - CDS 3981 - 4775 1175 ## COG0300 Short-chain dehydrogenases of various substrate specificities 5 2 Op 2 . - CDS 4786 - 5715 712 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 6 2 Op 3 . - CDS 5752 - 7695 2187 ## COG1835 Predicted acyltransferases 7 2 Op 4 . - CDS 7748 - 9070 1823 ## COG0536 Predicted GTPase 8 2 Op 5 . - CDS 9139 - 10941 2315 ## COG0322 Nuclease subunit of the excinuclease complex - Prom 10985 - 11044 6.9 + Prom 11120 - 11179 5.3 9 3 Tu 1 . + CDS 11213 - 12151 1545 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase + Term 12179 - 12216 6.0 - Term 12165 - 12203 7.0 10 4 Op 1 . - CDS 12208 - 13977 1719 ## COG0514 Superfamily II DNA helicase 11 4 Op 2 . - CDS 14052 - 15002 1536 ## COG1052 Lactate dehydrogenase and related dehydrogenases - Prom 15084 - 15143 3.7 - Term 15013 - 15057 -1.0 12 5 Tu 1 . - CDS 15164 - 15757 507 ## LDBND_0739 metal-dependent hydrolase of the tim-barrel fold - Term 15769 - 15813 5.5 13 6 Op 1 . - CDS 15825 - 17024 937 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 14 6 Op 2 . - CDS 17036 - 17509 831 ## COG1438 Arginine repressor - Prom 17549 - 17608 6.8 - Term 17663 - 17698 4.0 15 7 Tu 1 . - CDS 17727 - 19424 2765 ## COG0018 Arginyl-tRNA synthetase - Prom 19574 - 19633 9.8 16 8 Tu 1 . - CDS 19658 - 20572 817 ## COG0583 Transcriptional regulator - Prom 20637 - 20696 6.5 + Prom 20599 - 20658 4.7 17 9 Tu 1 . + CDS 20696 - 21901 1598 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs + Term 21924 - 21956 3.1 Predicted protein(s) >gi|300496314|gb|AEAT01000104.1| GENE 1 46 - 1956 1794 636 aa, chain - ## HITS:1 COG:XF2528 KEGG:ns NR:ns ## COG: XF2528 COG0553 # Protein_GI_number: 15839118 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Xylella fastidiosa 9a5c # 179 633 3 457 472 242 35.0 1e-63 MPGENVRVQGKVVKSHLTSFVSAEELRQVQAAEKLAGLPVHQKPYAFVTLKDWELVAGHL EKNLPGAIVSFEAAEGVLPWLAKEEGGRLKQIFGQEVPAGKVVTLTLSQAGRNGNWQLQL DGVIMAAQKPNDANKAEEVKGVKGVKGAKKAKGAKEKTESFAGKMVDAQVKLGGQTLPLH DYQLYSMNFIMDHPYCGIFLDIGLGKTLTTLAALAKLREEGMKGHILVIAPKTVAKSTWQ DEIDKWNLPFKTQSFLTDEKGRQLTPAGRKELYEAAAAKAAKGDWQLYFASRDLVSKLVD LGPWLFKNVVIDESQSFKSPASQRFKALKSVRGRIQRLIELTGTPAPNSLQDLWSQIYLL DQGERLGRSITAYRQQYFEPTLLVNNHPVKWRLLPGSEEKIYQAIDDIVISMKNTRLKLP ELTESLDWVEMPPRAKKSYQQLKKDQVLDLPGQEISADNAAVLAGRLRQLASGAIYEEDG EHYQEIFAEKIESCFYLTSNTATPSLVAYYFKSDASRLLAFYRKNGVKAELFDGSPGMIR RWNKGKIPVMLVQPASAGAGLNLQEGGHTLIWFTLPWSLEQYQQMNGRLYRQGQKKPVII HHLLTKGTIDRHVLDSLKKKDLSQQALLAAVRRTLA >gi|300496314|gb|AEAT01000104.1| GENE 2 2042 - 3607 2352 521 aa, chain - ## HITS:1 COG:L99798 KEGG:ns NR:ns ## COG: L99798 COG0737 # Protein_GI_number: 15672285 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Lactococcus lactis # 1 507 1 503 519 362 37.0 1e-99 MKLVFLHSSDTHGYLLPTDYQSTGDYDAPYGLSRVASAIKAEKAKWGADHVIVTDAGDCL QGSPLAAYTHGSKNLDNLARFTAAYNAVGYDVRCLGNHDFNFGQEYMAYYVDNNKAPFVN CNILDTETQVPTLGRDYVILERSGVKVGVLGITTQYIPHWEAVDRIKGLAFKSAYEQIAH FAKIIKPQVDVLAVLYHGGFESDIASGEATEPHNGENEGYRILTEIPEVDVMLTGHQHRR LNMISPSGKPCVQPGYRGEAIAEVVLDLEKTEAGYKVKEATSELIDTKDFASDPEVEEIV KPLDLATQKWLDQPIAHLDQPAPIEDANKGRIEGAPFINLLQQMQLYFTHADLSATAVMN DVAKGFGKTVTMRDILLNYPYANQLVSVKLTGKQLRHIVEHTASFLEKDENGKIHFIDRY LKPKPELYHFDVFYPLEYEADLSKPVGQRLTKLKFKGQDIQDDQVYHLAVNNYRANGGGF YPEYSLDKIEFSLDKDYVQMFSEYLTQGEVKVDTKKYYRFY >gi|300496314|gb|AEAT01000104.1| GENE 3 3675 - 3866 327 63 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|104773890|ref|YP_618870.1| 50S ribosomal protein L32 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 63 1 63 63 130 100 8e-30 MAVPARHTSKQKKRSRRAHLKLSVPAMHYDATTGEYRLSHRVSPKGYYKGRQVVSENSAS DND >gi|300496314|gb|AEAT01000104.1| GENE 4 3981 - 4775 1175 264 aa, chain - ## HITS:1 COG:BS_yqjQ KEGG:ns NR:ns ## COG: BS_yqjQ COG0300 # Protein_GI_number: 16079435 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Bacillus subtilis # 8 257 7 252 259 206 46.0 3e-53 MSDSLRNKVVVITGASSGIGRSIALESASRGATVVLLARRLDKLEEIAAEARELSASAAF AVKADLGLASDIEAAFAEVKEKVKHIDYLVNAAGFGKFEEFMEADMQDATEMFQVDVLGL MYMTRLFGRLMLEQGSGQIINFGSMAGKVPTTKSAAYSAAKAAVIQFSNVLRLELKPFGV KVMTVNPGPVYTNFFNIADASGQYVKNVQAFMLDPDDVAWEVVHYFGSNKRELNLPVSLA ALAKLYNLFPGIGDKLSLEFASRK >gi|300496314|gb|AEAT01000104.1| GENE 5 4786 - 5715 712 309 aa, chain - ## HITS:1 COG:L18686 KEGG:ns NR:ns ## COG: L18686 COG1234 # Protein_GI_number: 15672612 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Lactococcus lactis # 1 300 1 301 307 321 53.0 1e-87 MELEFLGTCSGQPSKLRNVSSLALKLLDELNEIWLFDCGEATQHQILRTNIRLRKITKIF ISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAGIEQFVKTSLRISKAKISYPIKFVTL EEGGKIVSERGFEVYTEKLDHRIDSWGFRVVEADKAGELLMDKLAEFKVPNGPLLGKLKR GEQVELADGTVLNGKDFLGPAKKGRVVTVIYDTRSTPSIRRLADHADVLVHEATFDASEG KLARDYYHSTCTQAAETASACHVGHLYLTHVSARYVGPLASQMVKQAREIFPATTLAKDL DKFVVPMKG >gi|300496314|gb|AEAT01000104.1| GENE 6 5752 - 7695 2187 647 aa, chain - ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 3 640 2 600 605 384 39.0 1e-106 MKKRYITGYAGLRALAVIGVILYHLDPDHFGGGYLGVPVFLVLTGYLVTNQIMAAYRNQG YFDIKSFYQRRFKRLYPPLIAMLWLTSAYIVLFQRNLLNKLYQIVASNLLGVYNWWQIFN GQSYFERFANNESPFTHLWTIAIDWQFYLLWPLVMALLVKFAKKRRNIFWVLVGLSVLSA LEMALLFRPGQDTSRIYYGTDTRFFSLGLGSAMAVLWPFEELDNRFTQKDGVILNWTGLA TLFGMLLLMFSPLMNAQTAFPYYGGMFIFSFFVTVFAAVIAAPVGIWNRLMTNPVFNWLG SRSYEIYLYQFPVMIFFESRVSDLADHVTLYRVTEIVLILLISEITYRLFEKKRYTSEGI RYNLTKLFQWPVKLSKNWLKTAAFFLVFLIGSGGIIFSPLAKADNKDGALIKTINDNSKQ QAEMNKKALESIKSSRKAAKKSSSKKSKQTSKAKTKSKTTKSKSGGKKVNQEFEKYGISQ ADLQAAQKLQVTAIGDSVMASSSDILHQLLPHAVIDATVSRQANVAPQLLQSYAQKGELQ DNVLIGLGTNGPFTDDEVKQIMQIVGPKRQLFWINVVVPTRSWQNQVNQQLQALTKKYKN LTVIDWYGYAHGQSSWFYDDKTHPNNVGQNYYSTYIVKEMVRASGSN >gi|300496314|gb|AEAT01000104.1| GENE 7 7748 - 9070 1823 440 aa, chain - ## HITS:1 COG:SPy1333 KEGG:ns NR:ns ## COG: SPy1333 COG0536 # Protein_GI_number: 15675273 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pyogenes M1 GAS # 5 439 2 436 437 421 58.0 1e-117 MPTPSTFVDQTKIEVQAGKGGDGMVAFRHEKFMPNGGPAGGDGGRGGSIIFVADNGLRTL MDFRYRRKFKAEPGENGRIKAQYGKAAKDLYLKVPVGTTVYDFFTGEEIGDLVENGQELV VAKGGRGGRGNIHFATSVNTAPEIAENGEPGEFRTLRLELKVLADVGLVGFPSVGKSTLL SVVTSAKPKIAAYQFTTLKPNLGMVLLPDGRDFSMADLPGLIKGASQGVGLGIQFLRHVE RTKVILHMVSMDPNNGRDAYEDYETILHELASYTEDDLSSKREIIVASQMDIPGADEKLA QFKKDLAAHGVDQEVYELSSVTHQGVDRLMSRAADLVSEVEAQEAEAAVKPKEEVKTKTY KYHRPEKMEFTVEKLADHEFEIHGEQLERLVAMTNLDHQDGIMRLARRLKKMGVDDELRA QGAVDGDDVYIGDFSFEFVQ >gi|300496314|gb|AEAT01000104.1| GENE 8 9139 - 10941 2315 600 aa, chain - ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 1 596 1 586 603 597 49.0 1e-170 MASQLIENKLKLLPEKAGCYLMKDVNGKVIYVGKSKNLKNRVRSYFKSSQEGRRAELVKN IADYDIIVVDSDKEAFLLEVTLIKKYQPYYNVALKSGTGYPYIEITNEKNPQTRLTSIVY KDKGYYFGPYPNVYAASATLKFIQKVFPLRRCSGYTGRPCLYYHMGQCLGSCFKEVPQSE YDEQIKKIKRFLNGDIQEVKKDLTNKMLQASADLEFERAGELRDQLKYIEETVEKQKIIS NDHTQRDIFNYYVDRSWISIQVFFLRQAKLLRRESHMFPLTDETDPEDEFMSFIAQFYAQ KNRVKPREVLVPKGIDQDELAAAIGIKVRTPQRGQKASLMEMARENAQLKLDDKFRLLEL GQRKTKGAQEEIFKALGLPYGSYIESFDHSHIQGADPVSALVVFKDGEPFKTGYRKFKLK GEVEHQNSADEVGNTREVVRRRYSRLLKEHERMPDLILMDGGQIQVEACEDVLRNELNLD IPVAGMVKDDKHRTNHLLYGDPFKGQPFKLIPMDPKSEGFYLMTRIQDEVHRFAITFHRQ THAKNSLVSRLDSIKGIGPKSRTKLLREFGSLKKIKEASIDDLRKAGLTLTQAQAVKISL >gi|300496314|gb|AEAT01000104.1| GENE 9 11213 - 12151 1545 312 aa, chain + ## HITS:1 COG:SA2078 KEGG:ns NR:ns ## COG: SA2078 COG1957 # Protein_GI_number: 15927863 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Staphylococcus aureus N315 # 2 308 3 311 313 246 43.0 4e-65 MKNFYLNHDSNMDDFTSLLLMLLAPDIKLIGVGVTDADGYVEPGVSASRKLIDRFNQRGD KLEVAKSDSRAVHQFPEAWRVSAFSVDHFPILNEKGTVETPVAAKPAHLDMIDKIHAADG PVTLVFTGPLTDLARALEIDPSIQDKIEELYWMGGSLNAHGNVYAPCADGTQEWNAWWDP EACKTVWDSKIKIQQVGLESTEELPLTDEMRQHFASNRKYPAFEFLGYVYALVNSFEVDS TYYLWDVLTTMSALYPEIATTRNTKSDVYTDGDRAARFFETENGRPMTLVTSANYDKFWE RFDDLCEKAKLF >gi|300496314|gb|AEAT01000104.1| GENE 10 12208 - 13977 1719 589 aa, chain - ## HITS:1 COG:lin2900 KEGG:ns NR:ns ## COG: lin2900 COG0514 # Protein_GI_number: 16801959 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Listeria innocua # 5 587 6 586 590 541 46.0 1e-153 MLDPQQVLKKYFGYDSFRPGQREIIEKVFQGKNVLAVMPTGGGKSLCYQIPALMIPGTTV VISPLISLMKDQVDSLREYGIPAAALNSSTAQEDVNPILRACYEGKIKLLYVTPERMEMD YFRYQLNFLEVNLVAIDEAHCISQWGHDFRPAYRKLKDGINALHTHPNVLALTATATKAV REDIGQQLDISEENFVITSFERKNLHFKLVNAPKNSRAYIVNYLKQHRGEAGIIYSNTRK KVEGLTEFLRREGFNVAAYHAGISNEKRAQVQDDFQYDRIPLIVATNAFGMGIDKSNVRF VLHANSAKNLEAYYQEAGRAGRDGLESEAVMLFHPSDLRQFRWFIDNSEADESYRQVQYQ KLQTISDYANTDECLQQFIVRYFGQDCPPCGKCSNCLNSGDFQDVTAEAQAIIGMVYDLD GRYGKKIVAQAVTGSKVKKISEIRADECVHYGLLKGKKQADVSSLVDYLVSKDYLQLVGD RYPLVHVTNRGWDVLDGKARVKRRQEVKSEQLAETGGDQVLFEELRKARRILAQKRGVPP FVIFSDLSLRDMAARKPQTPEELLQCSGVGDAKLANYGKAMLAVIKKYG >gi|300496314|gb|AEAT01000104.1| GENE 11 14052 - 15002 1536 316 aa, chain - ## HITS:1 COG:APE1831 KEGG:ns NR:ns ## COG: APE1831 COG1052 # Protein_GI_number: 14601656 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Aeropyrum pernix # 54 316 70 336 347 207 43.0 3e-53 MENAKVLVAGLAVKQLPELEKVCEVTFAPAGAGKDWYLANLGDFDALITGKLPVDQELLD AGKKLKIVSATGVGYDHIDVDYASSQGIIVSNCPASVMQPTAEMAFTLLLALSRKLALYN QEMRQGKFLDTGLLENQGQSPVGKTLGIFGMGRIGKTLASYARTFGMNILYHNRHQLPED EERALGVSYVPLADLLSQADYVSLNAPATAETYHVIDEAALSMMQPTAFLINTSRGSLVD EAALLRALKGKRIAGAGLDVFEEEPDFNEEFCQLDNVILTPHAGSATRESRRSVLKEASH NIVSFLVDGVPVNRVN >gi|300496314|gb|AEAT01000104.1| GENE 12 15164 - 15757 507 197 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0739 NR:ns ## KEGG: LDBND_0739 # Name: not_defined # Def: metal-dependent hydrolase of the tim-barrel fold # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 21 195 1 175 324 340 98.0 3e-92 MNRFHYNKGKSFAKKIGRRIMKKIDAHLHLVRDLASYKGNGRSNALGNGLVVWDSGFKTR LFPAGWGDDAFRADAARKVMEDHDVAKAVLLQGSLYGFQNYYSWQAAKAAPDRFAPAFSV DPFASEAEKIVKRHVEDLGFRALKLEVSQAGGLMGYHLPFDLAEDDRLGKILDYLSSYPG FAVAVDYGDSSQASHFQ >gi|300496314|gb|AEAT01000104.1| GENE 13 15825 - 17024 937 399 aa, chain - ## HITS:1 COG:BH2510 KEGG:ns NR:ns ## COG: BH2510 COG0452 # Protein_GI_number: 15615073 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Bacillus halodurans # 3 398 6 401 404 292 42.0 9e-79 MARISVYMTGGIAAYKAVSVVRGLQKAGHEVRVAMTAKSERFVGPATLAALTKWPVLDDL FSPGRQAEIAHIDLADWSQLALVVPADANILAKLAQGIGDDAVSTTLLALHCPRLIVPAM NSHMWENPAVQRNLRLLKEGGDRIMEPAVGRLAEGYAGKGRMPEAEEILAWVNDQLDLPA KGKRIVVTAGGNLEAIDPVRFIGNRSSGKMGFRLAEAAAKRGAEVDLIYGNVSVSLPRDA RIHLHPALSAQAMLEKLEELFPAADALLMAAAVSDWRPKEAADHKLKKQAGVEEMTLQLV KNPDLLKTMAQKKRPDQVVIGFAAETNDLLANASRKLAEKGADLIVANDVSGDAFGGDED QVTILEQGKELDPWPRMSKQAVADRLLELTLARLAEKKN >gi|300496314|gb|AEAT01000104.1| GENE 14 17036 - 17509 831 157 aa, chain - ## HITS:1 COG:BH2777 KEGG:ns NR:ns ## COG: BH2777 COG1438 # Protein_GI_number: 15615340 # Func_class: K Transcription # Function: Arginine repressor # Organism: Bacillus halodurans # 1 138 1 136 149 87 37.0 1e-17 MNYKERRQLIYELIQTNKIETQEQLLLLLQAHGANATQATISRDIHALHISKVPDDDGRS YYVKAPSAAVNRERQLKDAIRERVATVTAVQFTVVIQTSMKLTYAPILAGLIDDIDNDDV VGTIAGTDTLLVILKDAEAAASFADWAQAIVKERKIY >gi|300496314|gb|AEAT01000104.1| GENE 15 17727 - 19424 2765 565 aa, chain - ## HITS:1 COG:L0344 KEGG:ns NR:ns ## COG: L0344 COG0018 # Protein_GI_number: 15674020 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Lactococcus lactis # 1 565 1 564 564 603 53.0 1e-172 MNGKQLVAEALQAVLPDWSLDDIDVKIERPKDEKLGDYAFPTFTLAKTMRKAPNLIAAEL AEKIDQGSFEKVEAVGPYINFFLDKSQTGAAILQEILADPENYGARDLGHGRNVSTEYSS PNIAKPMGMGHLRSTMIGEAIARILAKEGFKPIRIDYLGDWGTQFGKMMAAYKMWGNDAD IEKDPINTLLSYYVRINREAEEHPEYDEDGREWFSKLEHGDEEAKRLWSWFREVSLERFK KVYDMLDVHFDSFTGEAFSAQMMDEPIQILREKGLLVKSQGAEIVDLEKYNLPPLMVIKS NGTSTYITRDLATAMYRKKTYGFYKSIYVVGQEQEVYFQQLRACLKEMGFDWADDIVHIS FGLMSINGQKMSTRKGNVVNLEDVLNESVDLARKQISEKNVGLKNADEVAKQVGIGAVVF HDLKNYRRNPIDFNLEEVVKFEGETGPYVQYSRARGESLLRKSGITDFSDADLTKIGAEE WDLVSFMGRYADTIQKAMETYDPSAIAKYALELAKRFNKYYAHTRILVDDVDEDVKKARL AVVQAVSHVIKSALDLLDVKAPDEM >gi|300496314|gb|AEAT01000104.1| GENE 16 19658 - 20572 817 304 aa, chain - ## HITS:1 COG:BH2117 KEGG:ns NR:ns ## COG: BH2117 COG0583 # Protein_GI_number: 15614680 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 6 289 6 289 290 129 29.0 7e-30 MLPFPYLVFQTVIDQGTFNKAAVVLNVTPSAISHSVNQLETELGFPVFVRSRNGVKLTPD GEKILPLIQEIINDQSRLEQVAQQIQGLDTGLIRIGAFSSACINWLPPLIRNFAKNYPKV KISVRQAGFSEITQAVKSGQLDLGLTMLPENEQGISCEKILEDEIYCIAPKDFQVKNGHS ISEEDLVNCNFILQQSDYDLDTKAALDYYSIKSTAIRFSIDDQSIVAMVEAGLGLGILPA LALQKMQGEVRILPFSTPFYRKIALVTSNQQRLAPSSRQMIKNVHELIRRQYPGGRLTME AENA >gi|300496314|gb|AEAT01000104.1| GENE 17 20696 - 21901 1598 401 aa, chain + ## HITS:1 COG:PAB2227 KEGG:ns NR:ns ## COG: PAB2227 COG1167 # Protein_GI_number: 14520410 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Pyrococcus abyssi # 2 392 12 404 410 285 36.0 1e-76 MLSKLFAKRIKTQNPSRLQGIFPESNFSDNISFGGGCPDESLFPSQALQAAYQKAVDQEQ AHSFQYHDVKGPGNLRDYLANRAGQQGIKANADDILLTAGGQQGIDLVAKLFLGAGDEMA VEAPSYVGALAAFDNYEPVYHEIPLEDDGVNLDYFEEVLKEHPEIKLFYTVPDFHNPTGI TMSLTKRQRLVDLANRYDFVILEDTPYRDLCYHGESLPSIKSFDTEGRVIFLSSFSKILS PAFRLGWLVAGPEIKEQLVNLKLSADLEVPYLAAGTVAAYLADNDLDQHIDQLKQVYRVK LDAMAKALKTYLPADAKISQPEGGFFFWVELDDEIDTRQLLLNEAVPKEHLIYVPSASFY PNWDKNNGLRVSFTGSSLSQIDEGAERLGRILSPVQLKMSI Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:36:59 2011 Seq name: gi|300496293|gb|AEAT01000105.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00100, whole genome shotgun sequence Length of sequence - 17197 bp Number of predicted genes - 20, with homology - 20 Number of transcription units - 11, operones - 7 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 70 - 129 3.9 1 1 Tu 1 . + CDS 223 - 597 101 ## LBUL_0285 alpha/beta fold family hydrolase + Term 610 - 654 2.2 - Term 667 - 717 10.2 2 2 Tu 1 . - CDS 733 - 984 268 ## LBUL_0284 hypothetical protein - Prom 1044 - 1103 4.3 - Term 1087 - 1143 1.3 3 3 Op 1 . - CDS 1171 - 1563 424 ## Ldb0327 hypothetical protein 4 3 Op 2 9/0.000 - CDS 1611 - 2405 360 ## COG3279 Response regulator of the LytR/AlgR family 5 3 Op 3 . - CDS 2398 - 3729 591 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 6 3 Op 4 . - CDS 3716 - 3907 112 ## gi|300812722|ref|ZP_07093130.1| bacteriocin-type signal sequence - Prom 3929 - 3988 7.8 + Prom 3878 - 3937 4.5 7 4 Op 1 . + CDS 4065 - 4835 935 ## COG1051 ADP-ribose pyrophosphatase + Term 4866 - 4899 6.1 + Prom 4844 - 4903 1.9 8 4 Op 2 . + CDS 4932 - 5198 358 ## COG3326 Predicted membrane protein + Term 5358 - 5387 -0.8 - Term 4998 - 5040 0.6 9 5 Tu 1 . - CDS 5191 - 6048 622 ## LBUL_0280 hypothetical protein - Prom 6252 - 6311 8.8 + Prom 6222 - 6281 10.5 10 6 Op 1 4/0.000 + CDS 6301 - 6855 794 ## COG1335 Amidases related to nicotinamidase 11 6 Op 2 . + CDS 6924 - 8357 2099 ## COG1488 Nicotinic acid phosphoribosyltransferase + Term 8391 - 8430 7.1 - Term 8374 - 8422 8.7 12 7 Op 1 . - CDS 8437 - 8913 702 ## COG1970 Large-conductance mechanosensitive channel - Prom 8933 - 8992 3.9 13 7 Op 2 . - CDS 8999 - 9826 1137 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 9879 - 9938 10.1 14 8 Op 1 . - CDS 9947 - 10954 1334 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 15 8 Op 2 . - CDS 10944 - 11396 805 ## LDBND_0273 transcriptional regulator (MarR family) - Term 11706 - 11737 2.5 16 9 Op 1 . - CDS 11761 - 12222 666 ## COG2606 Uncharacterized conserved protein 17 9 Op 2 . - CDS 12278 - 13210 1079 ## COG2040 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) - Prom 13241 - 13300 8.7 + Prom 13185 - 13244 4.3 18 10 Tu 1 . + CDS 13288 - 14682 2047 ## COG0833 Amino acid transporters + Term 14686 - 14715 1.2 + Prom 14744 - 14803 5.6 19 11 Op 1 . + CDS 14833 - 15798 1127 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen + Prom 15801 - 15860 2.4 20 11 Op 2 . + CDS 15892 - 17154 2091 ## COG3919 Predicted ATP-grasp enzyme Predicted protein(s) >gi|300496293|gb|AEAT01000105.1| GENE 1 223 - 597 101 124 aa, chain + ## HITS:1 COG:no KEGG:LBUL_0285 NR:ns ## KEGG: LBUL_0285 # Name: not_defined # Def: alpha/beta fold family hydrolase # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 124 45 168 168 234 99.0 1e-60 MVLLGESYGGYLASLFAAEYIFRKIIAISAFTSIAYQELFSSERSWLKDYLSENALDFYT LCRDNKVNTRTIFINGSRDSRVPYQQFLALPFMKKFKVNILPGFTHRESGTRLEYVVSLI KQEL >gi|300496293|gb|AEAT01000105.1| GENE 2 733 - 984 268 83 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0284 NR:ns ## KEGG: LBUL_0284 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 83 1 83 83 112 98.0 4e-24 MYQASRLPFWERVFLVVGNSVIFWLWHHLLIVALGLLTLLGLVIYLVVSGIRQKNVAKAV WPVVIFCSCLGLVYFAMSCAIMD >gi|300496293|gb|AEAT01000105.1| GENE 3 1171 - 1563 424 130 aa, chain - ## HITS:1 COG:no KEGG:Ldb0327 NR:ns ## KEGG: Ldb0327 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 36 130 1 95 95 142 95.0 3e-33 MMARADKEKFFHQLQTVLECKRKILFNFSFIGGCTMFFNKKENEAEEAFKKQLETVANDP AVKANAALSKLLEAAVKKTEKSESIRSIASNLDTQLRSNFAENELPKAVTSLQLDLARYS AVGANGVVLK >gi|300496293|gb|AEAT01000105.1| GENE 4 1611 - 2405 360 264 aa, chain - ## HITS:1 COG:SPy0245 KEGG:ns NR:ns ## COG: SPy0245 COG3279 # Protein_GI_number: 15674427 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Streptococcus pyogenes M1 GAS # 69 251 56 236 246 103 31.0 3e-22 MSKLEYKVIVCDDDASLAESLAQRIVYASENLSDDNENYRQSKVELALVANSFEEVAGYL VANETTNALYFLDIELNKGIKTGVDLAEFVRSRDPNAQIIFVTAYDKYAPLTYRRRIGAI DYINKELPSAAFMQRLKETLQAAFDNLDLLSHVNHQYFSYKCGRHLQRVSASEIYYIENS TMQHKVHLVAANGDSEFKNNISKLDEENDFLLKVSQSCVINPDNVVSVDLAKRYVTFPNG DIVYFSRDKKKQIAALGEEQDQSR >gi|300496293|gb|AEAT01000105.1| GENE 5 2398 - 3729 591 443 aa, chain - ## HITS:1 COG:CAC0080 KEGG:ns NR:ns ## COG: CAC0080 COG2972 # Protein_GI_number: 15893376 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Clostridium acetobutylicum # 181 443 190 442 447 84 27.0 6e-16 MEEIKLCIELIAGVLSAAISVAFDIYVGYRLAEIKLTGYRDRIFSFGLCILAILMAMQGR WETNAASVVELILFTWYYRKYGLVKVSGAFMVGLLIDFLYDLIIVFLQRIPNISELMLSL CTLGLSIVYYPLCILLIKHFRQWLLQRLEDQCRKIFWSLLAYSFCSLMVVNLINVFLDEA KPSVIVYSYLSIGQAAFIWIVYYTLRRAEDARFKAQLHQQKQKELEEYANYLEQSEDNLR AFRHDYRNLLNSLKVSAAEGNVQELLDKLERYSAENLDSQALLKYKDTNHIQVKTLKSLI ITKLNAIYQAGIPYDFECRQTIASIPGNVDELDLVRVIGIAFDNALEESQSLSEKNGHPE IQAMLYQETTDSLEFEIRNKIVPDKRQHTNLATKGFTTKTGHQGLGLANLQDIEQKYSEL DISYNVSDGCFDLYLTIDQEEDE >gi|300496293|gb|AEAT01000105.1| GENE 6 3716 - 3907 112 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300812722|ref|ZP_07093130.1| ## NR: gi|300812722|ref|ZP_07093130.1| bacteriocin-type signal sequence [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] bacteriocin-type signal sequence [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 7 63 1 57 57 100 100.0 4e-20 MKGKKIMDNNLHKVETLTDEELEQIVGGGIEGFGIYIGGATQVKNSEASLIFRLLHHKRH GRN >gi|300496293|gb|AEAT01000105.1| GENE 7 4065 - 4835 935 256 aa, chain + ## HITS:1 COG:alr2484 KEGG:ns NR:ns ## COG: alr2484 COG1051 # Protein_GI_number: 17229976 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Nostoc sp. PCC 7120 # 13 237 23 230 248 105 30.0 1e-22 MPELEKIVERPLITITNLIWSFNKETHRVQLLLVKRKDEPFADRWALPETLLRENESADQ AAVRLIKEKIGLDLPESSTEQLATFTSPHRTPGERALALTYMTYLPAMPNLRPGYGASDV AWFAFENLGHKYELFSADKDLTFELAEKSHALAFDHDEIIAVAIQRIRNKLDYQPSILQI LGPEFTLREAREVYAPFFQTTVDEIDNSNFRKTHGSLFTELGVQKNYHKSGRPPKLYCLK ETQSNILWRKANNKQG >gi|300496293|gb|AEAT01000105.1| GENE 8 4932 - 5198 358 88 aa, chain + ## HITS:1 COG:MA2252 KEGG:ns NR:ns ## COG: MA2252 COG3326 # Protein_GI_number: 20091091 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Methanosarcina acetivorans str.C2A # 12 66 16 70 90 59 50.0 1e-09 MNHFWQSSLLLINLIAFALYGIDKAKARMHAWRIPERLLLTCGLLAPAGSILGMLVFHHK VRKAYFYLAIFAGFILWAAIDYLILSFS >gi|300496293|gb|AEAT01000105.1| GENE 9 5191 - 6048 622 285 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0280 NR:ns ## KEGG: LBUL_0280 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 285 1 285 285 341 98.0 2e-92 MKKNRKNLALLLLAASLLAGCAGQSNSQSSQSSQAKSEKKAESKASSKSAAKSAASSAAS STKSSSSQASSKSAASSSQRADANRMGTLTSQLRVKLPGMLLPATDGLGQGSSNLNIRYT SSSSQNVVYYSVGNSPLALNDSRIASEKPYAVLTEKKNVADASSLINYQEPKTGLPAVKI AGNVTGTEEGAAGSTYLQFNQGQWSFVVRASNVQGQKPLPTAQKLLALYQQYGLPDTAAK SSVQVDVGESLGSLNTVITWAKGSSVYQLKAHSTETAFKMLKSLS >gi|300496293|gb|AEAT01000105.1| GENE 10 6301 - 6855 794 184 aa, chain + ## HITS:1 COG:BS_yueJ KEGG:ns NR:ns ## COG: BS_yueJ COG1335 # Protein_GI_number: 16080227 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Bacillus subtilis # 4 184 3 183 183 209 51.0 3e-54 MENEALLIIDYTNDFVDDKGALTCEAPAQALAGQIVSLADQFLAAGKWVILPTDKHFKGN PYHPETKLFPPHNLPNTWGREFYGPLQTWYNKHQDDKHVLVLDKSRYSAFCATGLDLFLR ERKVSRVHLAGVCTDICVLHTAMDAYNHGYDITVHEKAVAALNDAGQEWALNHFKSCLGA EVVD >gi|300496293|gb|AEAT01000105.1| GENE 11 6924 - 8357 2099 477 aa, chain + ## HITS:1 COG:CAC1002 KEGG:ns NR:ns ## COG: CAC1002 COG1488 # Protein_GI_number: 15894289 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Clostridium acetobutylicum # 7 475 17 487 493 447 48.0 1e-125 MSLSHALITDLYEFSMANGYFETLPRDTEAVFDVFYRTVPDNGSFVVSAGLEQVVEQLRG FHYTREDIDYLKSLKLFSAEFISYLETMTFDCVVYAIPEGTPVFPRVPILTVKGPLIQCQ LLETFVLNLINHQSLIATKSRRINLAAAGRPVMEFGARRAQGPDASVLGARAAVIGGCGS TSNVLSAAKYNIPVAGTMAHAWVQSYPTELEAFEKWAEVYPDNALLLVDTYDVLTSGVPN AIKVFEELRTKGHKKFGIRIDSGDIAKLSRKARKMMDDAGFPEATITASNALNENVIHSL LQEGAPLDSFGVGEQLITSSSSPVLSGVFKLAALKIGDGEWQPKIKLSNSKEKVTLPGEK KAYRLYHKGTKNAFADVIALADESLPEEFVGINMDPMMTETEANLKDFDAVLLTQVVVGP KAKSIETDTFKIQKHMYEKLAELPEETQRLLNPDRYPVYLTPALADLQAKMIKDHKL >gi|300496293|gb|AEAT01000105.1| GENE 12 8437 - 8913 702 158 aa, chain - ## HITS:1 COG:mlr5692 KEGG:ns NR:ns ## COG: mlr5692 COG1970 # Protein_GI_number: 13474738 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Mesorhizobium loti # 23 119 21 132 157 97 46.0 7e-21 MPKRINLPDGQQAVESTKGFFGEFKAFISKGNVMDMAVGIIIGGAFTTIVKSLVSDIISP LLGVVGGMNFDQFSLKFAGVTLAYGKFLTAVINFLMMAFVLFLIVKAFNRSGSLIKKEEE VEEEATTKVCPYCKSEIDIEASRCPMCTSQLEEKMAEQ >gi|300496293|gb|AEAT01000105.1| GENE 13 8999 - 9826 1137 275 aa, chain - ## HITS:1 COG:SP1245 KEGG:ns NR:ns ## COG: SP1245 COG0561 # Protein_GI_number: 15901106 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 2 273 4 271 272 122 33.0 8e-28 MIKLIASDLDETLLGPGSRVVEENLWAIKKCQELGIKFVPATGRGFYSLRQTLEELGQAD QAGQYTICYNGGAVFENKGPRLISFTGMDGDLVEEIFKRGQELGLGMHIYTEDQVYGYQL TQEEIDFCQGRADFAALPGGDLTALRASGARFAKILYVDTDFPRLKKLRKDLADFEKVSE MSFSSNRYLEFNPPKVNKGTGLKKLCQELGYQLDETMAIGDSFNDLAMIKAAGTGVGVAN VSPEMRADCDKITEKTFDQGAVAEAIGRWVLPDYE >gi|300496293|gb|AEAT01000105.1| GENE 14 9947 - 10954 1334 335 aa, chain - ## HITS:1 COG:PH0066 KEGG:ns NR:ns ## COG: PH0066 COG0252 # Protein_GI_number: 14590020 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Pyrococcus horikoshii # 5 332 2 325 328 251 42.0 2e-66 MTNKKILLLSTGGTIASVASEEGLIPGQSGAELLHTLGGLPYEVEVKDILSLDSSNIQPE EWAFIAEQIYKLRRGFDGIVVSHGTDTMAYTASMLTFMLQGIDLPVVLTGSQVPMQAILS DAPDNLRVAFAAAATCKPGIYIAFNRQIMRGCRCVKIRTTGFDAFKSINVDPVAMVTSDG IDIKHKDFEYVPSEHAICTLNTKVETQVAMIKLFPGFDPAVLSAMVDSGVRGIVIEAYGL GGMNYMRRNMVKAIGEIIKRGVPVVACSQCLYERTDLTKYEVGRAAMLEGAISGRDMTSE SAVTKLMWALGQGMGLEDVRAFFNKDIAGEVTITD >gi|300496293|gb|AEAT01000105.1| GENE 15 10944 - 11396 805 150 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0273 NR:ns ## KEGG: LDBND_0273 # Name: not_defined # Def: transcriptional regulator (MarR family) # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 147 1 147 148 247 97.0 1e-64 MDLGLRVKKINDLMAKRGNYELKKLGLTFSQFHCLVYLEKCAGQQAPLKQLENHFEVAQA TMAGIVGRLEGKGYVRSHLAESDKRVKIVCLTDEGRQICVSAKKGMHKLQEKVEQLYSRQ ELSQMEKYLDRLYELLAEENREACEEKDDQ >gi|300496293|gb|AEAT01000105.1| GENE 16 11761 - 12222 666 153 aa, chain - ## HITS:1 COG:FN0673 KEGG:ns NR:ns ## COG: FN0673 COG2606 # Protein_GI_number: 19704008 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 14 151 16 153 154 131 51.0 4e-31 MAVERVKDFFKDTDVNVIELPESSATVALAAQALDTEPDQIAKTLSFLVDDAPILVVMAG EARTDNHKYKATFHKKAKMIPFDQVEDYIGHAPGGVCPFAVKPGVKVYLDESLKRHTEVY PAAGSSNSAVRLTIPALEKYSDYTAWVDVTKTA >gi|300496293|gb|AEAT01000105.1| GENE 17 12278 - 13210 1079 310 aa, chain - ## HITS:1 COG:CAC3348 KEGG:ns NR:ns ## COG: CAC3348 COG2040 # Protein_GI_number: 15896591 # Func_class: E Amino acid transport and metabolism # Function: Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) # Organism: Clostridium acetobutylicum # 13 296 15 303 314 247 43.0 2e-65 MADLPTLLAQGPVTLDGSMSTPLEAWGEDTNSDLWTAKALADNPDLVYRVHQEYFKAGAR VTITDSYQASLPAFMKHGLSEDAARALIRESAAVAIKARDDFEKATGIHNFVAGSVGPYG AYLADGSEYRGDYALSHEEYVDFHAPRIKELVAGGVDCLAVETQPKLSEVRAILDYLKAK YPDLPVYVSFSLKDPASISEGLPLTEAVEEVSAYAQVFAAGANCFKLAWTVDVVKNLRAS KLPIVVYPNSGAEYDPSVKKWVYPPEAADFGQAGAAWLAAGAKLVGGCCTTMPEDIAGLA AAVKKGYTAF >gi|300496293|gb|AEAT01000105.1| GENE 18 13288 - 14682 2047 464 aa, chain + ## HITS:1 COG:BS_ybgF KEGG:ns NR:ns ## COG: BS_ybgF COG0833 # Protein_GI_number: 16077309 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Bacillus subtilis # 10 460 12 461 470 519 60.0 1e-147 MAQQEKVDHLERKMEARHIQMISLGGVIGTGLFLSSGYTISQAGPIGTIIAYFFGAILVY AVMLCLGELSVAMPYTGSFHVYAKNLLNPATGFTVAILYWLTWTIALGSEFTAAGIIMRH WFPSVPVWIWSLVFMILIFLSNFFSVKIFAESEFWFAAVKVAAIVAFIILGGLAVVGVIP LKGSQGAPGLTNLTKDGWFPTGFGGVFTTVLTVNFAFSGTELIGITAGEAKEPEKTLPKA IHTTLWRLIIFFIDSIFIMACLIPYKQAGVTESPFVHVFNMMGIPFASDLMNFVVLTAII SAGNSGLYASTRMLWSLGNEGTIPVVFAKTNKRGIPAISLLISMLGGVFSLLTSVYAADT IYLVLVSISGLAVVFVWMAIALCQLKFRQKWLKEGHTEDELKFKTPLYPFTPWFAFIASL ASCLLIWFDPSQRVALYATIPFVIFCYVAHHFYAKHQEKKQTSL >gi|300496293|gb|AEAT01000105.1| GENE 19 14833 - 15798 1127 321 aa, chain + ## HITS:1 COG:MA2121 KEGG:ns NR:ns ## COG: MA2121 COG2865 # Protein_GI_number: 20090964 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Methanosarcina acetivorans str.C2A # 44 229 189 372 458 105 32.0 1e-22 MLTPNDSSSFENQLSLRQDLTFNSLQALFDQQGLPFSPPSSQFGILQFSNFDLLVSDQCP YTIKCAVFKGTDQDEFLDRQEFTGSLAAQFQQVYAFLEKHNPVESQIKGLYREDRPAYPK QALREALMNAIIHRDYSNPASSLINLYTDRVEFISFGGLMPGITLEDIQLGLSVCRNKRL ADLFYQLKLVESYGTGLARIKSAYKGSRLAPQILAAPSSFKVVLPHYQAAVKATSKPVKK AVTPAPSPSPAPKPKARATGNEETVLAFGKEHGEFIRSDIEELLGVSPATATRLLRQMEN SGLVLKRGKAKAIRYRISENS >gi|300496293|gb|AEAT01000105.1| GENE 20 15892 - 17154 2091 420 aa, chain + ## HITS:1 COG:L93420 KEGG:ns NR:ns ## COG: L93420 COG3919 # Protein_GI_number: 15674209 # Func_class: R General function prediction only # Function: Predicted ATP-grasp enzyme # Organism: Lactococcus lactis # 3 409 6 406 408 432 53.0 1e-121 MQQFTPILLGSDINVYGMARSFHEAYGIKVQAWGASTLAPTRYSKIVDIEVHPGFTEDPE FIKVMREKIKEYKKHPEPVILISCGDGYSELLAKHKQELEEAFIVPYIDYALLEKLISKE GFYEVCEEYGLPYPKTKIITMSAYKDGSYADVPFPFPVALKPEDPVSWLDVQFEGRKKAF VIKDLDEFKDIVGKIYTNGYKEDLILQDFIPGDDSNMRVLNAYVDKNHQVKMMCLGHPLL EDPDPIAIGNYMVITPDYDEKLYQTVQAFLEKINYTGMANFDIKYDVRDGQYKFFEINLR QGRSSFYVTLNGYNLAKWYVDDYVEDSLKDQPVVYGNQDPAKHKLWLGVPDKIFEQYAVD SLAKKEALALLRAGKVGTTVFYKPDMNIKRWLLMKHMYHNYYKDYQKYFKVNKEQYFEKK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:37:27 2011 Seq name: gi|300496266|gb|AEAT01000106.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00001, whole genome shotgun sequence Length of sequence - 24541 bp Number of predicted genes - 26, with homology - 25 Number of transcription units - 10, operones - 6 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 2069 1663 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 2227 - 2286 6.1 + Prom 2288 - 2347 5.7 2 2 Tu 1 . + CDS 2367 - 2567 337 ## LDBND_0512 hypothetical protein + Prom 2570 - 2629 3.0 3 3 Op 1 25/0.000 + CDS 2674 - 2940 388 ## COG1925 Phosphotransferase system, HPr-related proteins 4 3 Op 2 . + CDS 2940 - 4667 2562 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) + Prom 4728 - 4787 4.9 5 4 Tu 1 . + CDS 4839 - 5243 540 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Term 5261 - 5306 7.1 + Prom 5266 - 5325 5.8 6 5 Op 1 3/0.000 + CDS 5347 - 6096 1040 ## COG4862 Negative regulator of genetic competence, sporulation and motility + Term 6117 - 6146 1.2 + Prom 6105 - 6164 4.8 7 5 Op 2 . + CDS 6198 - 7058 783 ## COG4469 Competence protein + Term 7223 - 7275 1.2 - Term 7036 - 7070 4.3 8 6 Op 1 . - CDS 7071 - 7715 511 ## LBUL_0517 dithiol-disulfide isomerase - Prom 7735 - 7794 4.5 9 6 Op 2 . - CDS 7796 - 8398 980 ## COG4116 Uncharacterized protein conserved in bacteria - Prom 8418 - 8477 3.8 + Prom 8416 - 8475 3.5 10 7 Op 1 6/0.000 + CDS 8496 - 9134 946 ## COG2357 Uncharacterized protein conserved in bacteria 11 7 Op 2 7/0.000 + CDS 9131 - 9928 1079 ## COG0061 Predicted sugar kinase 12 7 Op 3 . + CDS 9943 - 10836 234 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit + Term 10866 - 10915 6.4 - Term 10855 - 10903 14.1 13 8 Op 1 . - CDS 10922 - 11110 263 ## 14 8 Op 2 . - CDS 11182 - 12009 1272 ## COG1968 Uncharacterized bacitracin resistance protein 15 8 Op 3 . - CDS 12033 - 13043 1497 ## COG2706 3-carboxymuconate cyclase - Prom 13070 - 13129 4.9 + Prom 13018 - 13077 4.2 16 9 Op 1 . + CDS 13208 - 13588 563 ## COG3731 Phosphotransferase system sorbitol-specific component IIA 17 9 Op 2 . + CDS 13598 - 14779 1451 ## COG0628 Predicted permease 18 9 Op 3 . + CDS 14780 - 15337 752 ## COG0219 Predicted rRNA methylase (SpoU class) 19 9 Op 4 . + CDS 15368 - 15763 668 ## LDBND_0535 hypothetical protein 20 9 Op 5 . + CDS 15783 - 18149 3179 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 21 9 Op 6 14/0.000 + CDS 18155 - 19378 1583 ## COG0612 Predicted Zn-dependent peptidases 22 9 Op 7 4/0.000 + CDS 19375 - 20628 1592 ## COG0612 Predicted Zn-dependent peptidases 23 9 Op 8 1/0.500 + CDS 20625 - 21353 941 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 24 9 Op 9 5/0.000 + CDS 21422 - 22579 1679 ## COG1426 Uncharacterized protein conserved in bacteria 25 9 Op 10 1/0.500 + CDS 22603 - 23187 301 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase + Term 23211 - 23257 6.1 + Prom 23196 - 23255 7.3 26 10 Tu 1 . + CDS 23395 - 24504 1543 ## COG0468 RecA/RadA recombinase Predicted protein(s) >gi|300496266|gb|AEAT01000106.1| GENE 1 3 - 2069 1663 688 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 25 675 144 812 815 645 49 0.0 MNNDNFFGDFDDLFNALNGRSNGANRDNNQNPSGPTLGRGGNGGGQSLLDQFGTDLTALA KKGKIDPVIGRDREIARVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQDIVDGSVPAKL QNKRIISLNMVSMVQGTGIRGQFEQRMQQLVKELQSQPDIILFIDEIHEIVGAGNSEGGM DAGNIIKPALARGELQLVGATTIKEFREIEKDSALARRFQPVEVKEPSIDETIKILKGIQ KRYEDYHHVKYTDDAIEAAVKLSARYIQDRFLPDKAIDLLDEAGSRMNLTIPYIDKEKIQ ERIDAAEKLKQDALKNEDYEKAAYYRDQIEKYEKLKDQNVDPDKTPTITAKVMDKIVEEK TNIPVGDIQAQEENQLINLASDLKAKVIGQDEAVDKVARAIRRNRIGFNKSGRPIGSFLF VGPTGVGKTELAKQLALKMFGSEDAMIRFDMSEFMEQYSVSKLIGSAPGYVGYEEAGQLT ERVRHNPYSLILLDEVEKAHPDVLNLFLQILDDGRLTDSQGRTVSFKDTIIIMTSNAGQG IKTASVGFAAENNKNEAEETRKVMSQYFKPEFLNRFDDIIQFHPLSKGNLLQIVNLLLDK TNAMVSDQGLHIKVTDAAKDKLVEEGYDPEMGARPLRRVIQEEIEDKVADYKLDHTEAKQ LVADLKDGEITISEEVPALPATEASKEK >gi|300496266|gb|AEAT01000106.1| GENE 2 2367 - 2567 337 66 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0512 NR:ns ## KEGG: LDBND_0512 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 66 1 66 66 121 98.0 8e-27 MDYTDILEKLVSGDLLEYQIDPQKDPEDAFVFQQSLRNYGKNKKITGRAGRGGVITYTSI ENKPKY >gi|300496266|gb|AEAT01000106.1| GENE 3 2674 - 2940 388 88 aa, chain + ## HITS:1 COG:L120335 KEGG:ns NR:ns ## COG: L120335 COG1925 # Protein_GI_number: 15672099 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Lactococcus lactis # 1 88 1 88 88 116 79.0 1e-26 MEKKEFHIIAETGIHARPATLLVQAASKFGSDINLEYNGKSVNLKSIMGVMSLGVGQGAD VTISAEGDDEKEAIAAVAETMSKEGLAE >gi|300496266|gb|AEAT01000106.1| GENE 4 2940 - 4667 2562 575 aa, chain + ## HITS:1 COG:lin1002 KEGG:ns NR:ns ## COG: lin1002 COG1080 # Protein_GI_number: 16800071 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Listeria innocua # 1 574 1 572 572 703 62.0 0 MTETLRGIAASDGVAVAPAYLLVEPDLSFEKKSVADAEAEVARFDKAVAESQAELESIRK VAAESLGEEEAQVFDAHLMFLSDPEFTGQISAKIKSDAVNSEAALDEVAQNFITIFQSMT DNAYMKERAADVRDVSKRIMAHLLGKELPNLASIDHEVVLVAEDLTPSDTAQLNKKYVKG FVTDLGGRTAHSAIMARSLEIPAVVGTEKITTSVENGQMLIADGLDGVAIVEPSEEQVAD YRKKGDDFAKQKAEWRKLKDEPSVTADGKHFTVAANIGTPDDLAGVLENGAEAVGLFRTE FLYMNSNDFPTEEDQFEAYKKVLEGMNGKQVIIRTMDIGGDKHLSYWDLPEEMNPFLGIR AVRLSLKNKEIFRTQLRALLRASAYGKLGIMFPMIGTLDELHQAKAVLAEEKDKLVKEGV KVGDDLQVGMMIEVPAAAVLADQFAKEVDFFSIGTNDLIQYTMAADRGNENVSYLYQPYN PSVLRLIKHTIDSAHEAGIWCGMCGEAAGDSIMFPILLSMGLDEYSMSATSILRIRNEMK KLSTEELASLADKATKESLTNEDNIELVKNLMADK >gi|300496266|gb|AEAT01000106.1| GENE 5 4839 - 5243 540 134 aa, chain + ## HITS:1 COG:lin2295 KEGG:ns NR:ns ## COG: lin2295 COG1393 # Protein_GI_number: 16801359 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 131 1 131 131 169 64.0 1e-42 MVDLYVSPSCTSCRKAKQWLEQHNIPYKERNIISDPLNREEIIHVLRMTEEGTEEIVSTR SKAFQELNIDLDDISMNELIDLIEKNPSLLRRPIILDDRRMQVGYNEDEIRRFLPRSVRR LEIARAKRLADQDF >gi|300496266|gb|AEAT01000106.1| GENE 6 5347 - 6096 1040 249 aa, chain + ## HITS:1 COG:lin2294 KEGG:ns NR:ns ## COG: lin2294 COG4862 # Protein_GI_number: 16801358 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms; N Cell motility # Function: Negative regulator of genetic competence, sporulation and motility # Organism: Listeria innocua # 1 244 1 217 217 78 23.0 2e-14 MRVEKVNENTLRVSMTREDLNQRGLKILDLLGNRERVQEFFLSVLREVDEDNDFASDAPV TFQVMPNDGGIDLLITKMNAGSDLPEEMQRFFDPEANGVGDDMAEAVEEDDWAFSDLNPA DDANTEMDPVIMQDLGNTDDEDYEDYWSYQETHILVFDDIDDLLALADSLKVSDLASSVY YYKQQFYLKLAFMDENYAEIKPADAWAIANEFGRQVSADEFQQAQAHGQCLFQQDALGAL RRQFASKRA >gi|300496266|gb|AEAT01000106.1| GENE 7 6198 - 7058 783 286 aa, chain + ## HITS:1 COG:SPy1395 KEGG:ns NR:ns ## COG: SPy1395 COG4469 # Protein_GI_number: 15675318 # Func_class: R General function prediction only # Function: Competence protein # Organism: Streptococcus pyogenes M1 GAS # 32 274 28 274 320 66 25.0 6e-11 MYAALLNKELVLAVSEAGKVRENPAYLNQEVYRCPRCRKPVILVLSQKAEPFFKHYQAYR GLGEQEEHRQGKMLLKAALTAAGLNAKAEVPLADGALRADVLATPLLAFEVQCAPLSKGE FAHRHALYQAIGIKDVWLVGCRHFLGEKLKQTQLIFFRENRCWGSYYLEIHQEAGLIRLK YQIRQAPVSQTLLYRQVDFALDAEGIAALWHFRPLLPPPLADDWVKERDYLDQQLKEKSK LGQKLGELMYLAGYTVFTLPKEAFSTWRRPGEKSWLLKFLQQKTSP >gi|300496266|gb|AEAT01000106.1| GENE 8 7071 - 7715 511 214 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0517 NR:ns ## KEGG: LBUL_0517 # Name: not_defined # Def: dithiol-disulfide isomerase # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 214 1 214 214 394 98.0 1e-108 MFELFLFINPLGLSCYQLEKRIRLLAAELQLEISVNYIPLVTMEAMKADMVKRNWNFNTS INLANYHNASVSAQSFYYAVQIAYGKKKARSFLFKLQESLSDGQRSYSPALAEELLESLN IKPEKISSTLNDACLKDVIAQDQQLARKFQITALPSTVVFDDQIDDSGLLLDGELSDDDL LQIFQNSADSCLEPLMQLTENAPLYYPVSHLHLL >gi|300496266|gb|AEAT01000106.1| GENE 9 7796 - 8398 980 200 aa, chain - ## HITS:1 COG:L164461 KEGG:ns NR:ns ## COG: L164461 COG4116 # Protein_GI_number: 15672342 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 163 1 158 197 62 34.0 5e-10 MSKNREIEAKVALDQASYEAIVAAYPVKSDFKQSNHYFDTPDKQLKEDHSALRIRCFQDR AEETIKVPVKKLQETYHESLEINDDLTLPEAEDFLKKGRPSLTGNVGQYLLEHYPDKASQ LTLFSWSKTRRILLDGPKGCELTLDQTSYPDGYQDWEMEIENDSPAAIKEALAEIKTRFA LPVKSANNQSKIARASQHAK >gi|300496266|gb|AEAT01000106.1| GENE 10 8496 - 9134 946 212 aa, chain + ## HITS:1 COG:lin0966 KEGG:ns NR:ns ## COG: lin0966 COG2357 # Protein_GI_number: 16800035 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 7 211 4 208 222 243 60.0 2e-64 MSVITDWDTFLWPYNEAVNELKVKFRALRQSFLTKGEHSPIEFVVGRVKTVDSIKEKMQR RVISPDVIETDMQDIAGIRIMCQFVDDIYRVVDLLHARDDLEVVEERDYIQNAKPSGYRS YHMVVAYTVYLPEGAKRLLAEIQIRTLAMNFWATVEHTLNYKYQGAYPEDISERLKRTAE AAYQLDEEMSSIRNEVKEAQKIFTKNKGKEKS >gi|300496266|gb|AEAT01000106.1| GENE 11 9131 - 9928 1079 265 aa, chain + ## HITS:1 COG:SPy1126 KEGG:ns NR:ns ## COG: SPy1126 COG0061 # Protein_GI_number: 15675106 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Streptococcus pyogenes M1 GAS # 2 264 12 275 278 249 49.0 5e-66 MKVAIVHNDRVTTQVAVRHLQVLLAEKGILQDQQHPDLVISVGGDGTLISAFHKYKQQLD KVCFAGIHTGHLGFYTDWRNYDMEKLVDALASHPVEENEVGYPLLDMKVTTSCGEKRFLA LNEASIKRISKTMEAEVWLGGERFENFRGDGLCVSTPTGSTAYSKSLGGAVIHPRLKTLQ LTEIASINNLVFRTVGSPIVIAPDEWITIVPKISDRAVVIVDGERISLTDVQKVDYKIAA EEIRFYQYGHHHFWERVNDAFIGDR >gi|300496266|gb|AEAT01000106.1| GENE 12 9943 - 10836 234 297 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 43 282 44 282 285 94 30 5e-19 MIVAKNDPGQLSHFLLKKGFSRRAVNNCKNHGGMMSVNHHRRNGSYRLKEGDVVHFLMGQ EPVNPWLKVSRRPLDIVEETADYLVINKPAGLLSIPSGFHAEDAVINRVLAYFEKQGVNP AYVKPHIVTRLDQDTSGLVLLGKNAIAHDRFSKLGKDDFIKKYHAIVHGNFAEGDLSGLI DKPLARVGDTVKREVNPKGQRALTEYRVLDQVPGASLIELRLLTGRTHQIRIHMASIGHV LYGDDLYGARDAFARQALNCFYLAFPNPFGGEEREIEIPDPGDMQGLWRQLKQEAGK >gi|300496266|gb|AEAT01000106.1| GENE 13 10922 - 11110 263 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLSLLCLLFILWLCWKMGVALWRVLIFLIGVGLAFALLSSVVLPLLAICALGGLAWAVIS NA >gi|300496266|gb|AEAT01000106.1| GENE 14 11182 - 12009 1272 275 aa, chain - ## HITS:1 COG:SPy0280 KEGG:ns NR:ns ## COG: SPy0280 COG1968 # Protein_GI_number: 15674457 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Streptococcus pyogenes M1 GAS # 1 269 3 271 279 272 55.0 5e-73 MLDIFKAIILGIIEGVTEFLPISSTGHLYLADYIIKLDQPTSFINMFMVVIQLGAILSVI VIYFNKLNPFAPSKSKREKGQTWQIWFKVIAAVLPSIIIGLPLNDWLEENMTSWQVISAT LIIYGILFIVLENYYAKRQPSLTDLNKMSYKTALLIGCFQVLSMIPGTSRSGATILGAML IGSSRYVATEFSFFLAIPTMFGASLLKLVKFFKAGHVFFGNQLAILLVGMVVSFIVAYLS IKFLLKYVQTHDFKPFGWYRIVLGIIVIICGLVFA >gi|300496266|gb|AEAT01000106.1| GENE 15 12033 - 13043 1497 336 aa, chain - ## HITS:1 COG:L11851 KEGG:ns NR:ns ## COG: L11851 COG2706 # Protein_GI_number: 15674136 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Lactococcus lactis # 3 333 5 339 341 242 42.0 8e-64 MHILIGGYTKHESAGIYQFDFIGSGDQAHLEQRRNVVEVGGPTYFQKDGQFIFTIKNENG QGGIAAFANGKLVSQLLHEGSSPAYIGINKEKKLLYTANYHTGVLAVISYDDQGQLTLLD QVKHENKALGPRPEQAGAHPHYFDGTPGGHLVSCDLGQDRVDFYGFDGQKLTHLASYQNE DGFGSRHLAFSPDGKYFYVAGELSSQVNVVKFDEENWMFRSLATYSTIPESWDQHNGAAA IRLSSDGKFLYVSNRGHDSIAVFAVLPDQALKLVQRVSTFGEFPRDFNWDAEEKYVVAAN QNSNNATLYQRQSDGTLTPLEKYIAVPEGTRVLFTD >gi|300496266|gb|AEAT01000106.1| GENE 16 13208 - 13588 563 126 aa, chain + ## HITS:1 COG:lin0546 KEGG:ns NR:ns ## COG: lin0546 COG3731 # Protein_GI_number: 16799621 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIA # Organism: Listeria innocua # 5 89 4 86 116 58 41.0 3e-09 MKWISTIKAIGPNAISEKDRVVILFGQTAKDELQDVSVIQAFDDEQAAQAVVLKKGDTVT IDGTTFLINYVGPMAVSNLRALQHASLFFTDKVPKKPMSNALYLDLPEDQEMPKFRVDDE IVYEHL >gi|300496266|gb|AEAT01000106.1| GENE 17 13598 - 14779 1451 393 aa, chain + ## HITS:1 COG:SPy1011 KEGG:ns NR:ns ## COG: SPy1011 COG0628 # Protein_GI_number: 15675014 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Streptococcus pyogenes M1 GAS # 2 376 7 380 393 256 37.0 4e-68 MKKRDTSLFTDWVLNNRFSVGLINVLLALVIVLVFNKISFILNPVNTFISAILPPLLVAM VQYYLMEPVVDKLEEKFKVPRTVTIMVIFAIVTVFLIWAINSLIPVVQSQIDSLVKNWPT IWKNSTNAVDELLHSPKFSGLRDSLQKQMTSLQKNFSKSMGSTVSSALGNLTSAVTVATA VFTTLATAPFLLFFMLKDGHKLRPFLVKFAPQRWEQATSKLLHEVNQAVSSYVIGQVSVA ICVGIMFFIGYTIIGEPYGAALAICAGFLNLIPYFGTFIGLIPALIIALVTNLPMVAKVL VVFFIEQIIETRVISPLVVGNRLKMHPVTTIIVMLGAGSVWGLWGVIGGIPIYAVMKILL THVYRYYRKVSHLYDDSFQDEADQAGQEEKERK >gi|300496266|gb|AEAT01000106.1| GENE 18 14780 - 15337 752 185 aa, chain + ## HITS:1 COG:L161988 KEGG:ns NR:ns ## COG: L161988 COG0219 # Protein_GI_number: 15673131 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Lactococcus lactis # 3 169 2 169 169 197 57.0 8e-51 MTNHIVLFEPEIPDNTGNIARTCAGTNTVLDLIEPLGFRLDDKHLKRAALDYGGEVEIRR HDDLRAFLATLPDNAEMYLISKFSSKAYTDVDYTDESKDYYFVFGRETTGLPETFMRQYA DRNLRIPMSDKIRAFNLSNSAAIVIFEALRQQGFPHMEKSHHYENDKLKDDYNRPGRYQR NLPKH >gi|300496266|gb|AEAT01000106.1| GENE 19 15368 - 15763 668 131 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0535 NR:ns ## KEGG: LDBND_0535 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 131 1 131 131 230 99.0 2e-59 MEFNKQTPIIVRAFHYDLLDEPEEKNEVNVAIRQVVATGEDGVEDAGEAGGYYEVAVVYD VTPDEDNIIEISGANTQVVQLLGYHGDGQDLDQETYRLLSRPLVEYIETLTYEVSQVALD EPINLDFEPNF >gi|300496266|gb|AEAT01000106.1| GENE 20 15783 - 18149 3179 788 aa, chain + ## HITS:1 COG:lin1423 KEGG:ns NR:ns ## COG: lin1423 COG1674 # Protein_GI_number: 16800491 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Listeria innocua # 26 784 30 760 762 589 46.0 1e-168 MPRKKRQANRKNRNKKKREESLSWVVTGIVLILVAILALLRFGWLGKELANLLRLLIGDS YLLGGAFLAILGLVMLIYGQPPRFGFKRTSGLILAYLGLLYILASRFFNVRSVHSEFLPA FKNVIFEELARANVTVSVGGGWIGSFLYGIFYQLLGQIGGLCLAVLNIISGILMFFDVKF RSLVAAFQKISRSFIQQSKDGAGQLKGKYSEYREQQRKDPNNRGKLTDPWRDSEEAKPEK KTRQEKAEKQAAKPSLPEIQVAEQHPDPPVTHSLELDDLPKPRSQAEDDQKMILADQQVD HGLDKSTVSYDDNYQFPPLSLLKAVQASDQSSDKDKIKQNTAILEETFKSFGVEVNVKKA ILGPTITRYEVQPAVGVKVSRIVNLADDLALALAAKDIRIEAPIPGKPYIGIEVPNQKAQ SVAFKDAMEHQDQKAKDHPLMVPLGKDVTGQIISADLTKMPHLLVAGSTGSGKSVAINTI LASILMKARPDEVKLVLIDPKMVELSVYSGVPHLMIPVVTDSRLASKALKKVVDEMERRY KLFAAGSVRNMGEYNRKVAENNKDTSRPVMEPLPYILVVVDELSDLMMVGGHDVENSIVR LGQMARAAGIHMILATQRPSVDVITGLIKANVPSRISFAVSSGVDSRTILDQVGAEKLLG RGDMLYLPIGASKPDRIQGAYIDVDEVEAVVDWVKGQQSAEYDEEMIPQAGDDDESSDDD VDDEYYQQAVDLVRRQQSASTSMLQRRFRIGYNRAARLIDELEEHGVVGPPEGSKPRKVL LPPEGQEE >gi|300496266|gb|AEAT01000106.1| GENE 21 18155 - 19378 1583 407 aa, chain + ## HITS:1 COG:SA1121 KEGG:ns NR:ns ## COG: SA1121 COG0612 # Protein_GI_number: 15926861 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Staphylococcus aureus N315 # 5 406 10 415 421 60 18.0 6e-09 MNEENISIQSNQKFTSGNLGLFVRLPLTKHNMAMASLLCRMQMNESELFPDPGLQQVELQ QRYSFQFEAVVQLFGKEMVISYLANFVEPQEILDPDYNYRQIAETFAGLATRPLITPSSV QLAQRQLKEEYQELMAEPSNAALSAFFNNWYADQPDYAASFIGSIEDITKATSQEVRRFA DAIKTQASCVFGHVYDARQVKRLLQKKLQEEGWPGLALDFGSRDLLISAPDLRIEKTDEQ GKQQAQLFLGYAYKGQPSLQDLATGTVLRQYLTGDQSSRLFSKVREENGAAYAVESNWYA DNALFLVNAGLDPDKLDLARQIIGKEMQMVADGRIDPGLLKQSRQALANRHLLNQDHASW LLAKDLRYKLHADYEDFDMMAAVSRVTSGRLADFAQKLYLNESYVLK >gi|300496266|gb|AEAT01000106.1| GENE 22 19375 - 20628 1592 417 aa, chain + ## HITS:1 COG:BS_ymfH KEGG:ns NR:ns ## COG: BS_ymfH COG0612 # Protein_GI_number: 16078749 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Bacillus subtilis # 13 399 8 399 415 143 27.0 8e-34 MIKPEIIRKDFPSGFKAQVIRRKGFNQRFFGIIVDFGSADPQPVPGLAHFLEHKLFAAEE GDLSLEFEKIGASVNAFTSFNETMYYASGVKNVGPMIDLLFKLVGQPYFTDENVAKEIPI IQQELAMYQDEPDWILGDRLLRGIYGDCNLAIDVAGTRESIASVTKEKLQAAYDENYVAA RMSFVACGDFTDNQVKTILRQARKLSDQYLRPGKPQKEADLVPFLPSGQDWNLIGGEVPL FTAAIPLPNFKKVLASRDMSQILLEIMLESKLGAASHWFASARQAGLVSQPLQISVTYTR QGAYAVLLGMSPEAEELLDQIKAELAPDKLFPKKQEMEMRKLFEIHKRSWLAQTVRSLDN LSGFAVEMAEESLDEEDLFANVEQMQAMNFADYRAYCQELCEGASINTARLLEEDDQ >gi|300496266|gb|AEAT01000106.1| GENE 23 20625 - 21353 941 242 aa, chain + ## HITS:1 COG:lin1431 KEGG:ns NR:ns ## COG: lin1431 COG1028 # Protein_GI_number: 16800499 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Listeria innocua # 1 241 5 242 243 148 36.0 8e-36 MKRTLIFGATGGIGQAIAARLAESGWSMYLHCNRNWEEASDLARTLAEKHPLQDFMPIKL NFLAGDDQLKNFASSLLPVNAVVFAQGITNYDFLGSQSSQVIDQIIKVNLENPIKLTKLL ESQLLKQEHSRIVYLGSVYGGQGSAMEAVYSATKGGISRFAQAYAREVAASRFTVNVVAP GAVNTAMNAMFSPETLKELAEEIPAGHLAKPKEIAYWVDCLLNPESDYLTGQTIYVSGGW LE >gi|300496266|gb|AEAT01000106.1| GENE 24 21422 - 22579 1679 385 aa, chain + ## HITS:1 COG:lin1432 KEGG:ns NR:ns ## COG: lin1432 COG1426 # Protein_GI_number: 16800500 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 315 1 310 311 86 27.0 7e-17 MSGIGEQLRKAREAKGLSISDIEKATKIQSRYLEAIENNDFDKLPGDFYVRAFIRQYAQI VGLDGKELLSQYQGEVANEVTSEVSQPAASSPAQEVHEEAHEEEAAPVEPAENKPARISA SRPAKREVAEKAPKDAKWRKLVPRLALGCGIALLLLIGGMVFANMKKTGSSSQKENAGSS VTITSKKSSSKKSSSASSSSKKKKTSSIKVASLGGSSYRVTGIKSSTPLVVRSSKQSIYY YVSVDNVITNQGTLQSGEKHTETVKKGQTLIVYLGTDTGVTVTVGGKKIPYTPINGTTRL TIYLGDSSASASSSAASRTTSTNTNTNTSTSYSSRASSSVQSSASSRPAASSSSVRSSSQ ASSSAAPSSQASSAPSSSAASSSKQ >gi|300496266|gb|AEAT01000106.1| GENE 25 22603 - 23187 301 194 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 1 189 472 668 904 120 37 9e-27 KSEEFKAMNLPNKLTVFRIFLIPIFMILLIAQWPAGSFTLAGTEILWSRVVAMIVFAVAS ATDWFDGHIARSRGLVTNFGKFADPLADKMLTMTAFIFMVALNLSPAWVVAIIVCRELAV TGLRLIVVENNGKVMAAAMPGKIKTTCQMLSIIFLLFGDIFHLGTILLYLALIFTIYSGY DYFHSSWDVFKGSM >gi|300496266|gb|AEAT01000106.1| GENE 26 23395 - 24504 1543 369 aa, chain + ## HITS:1 COG:lin1435 KEGG:ns NR:ns ## COG: lin1435 COG0468 # Protein_GI_number: 16800503 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Listeria innocua # 4 338 2 339 348 472 73.0 1e-133 MAKDEKQAALEAALKKIEKNFGKGAVMRMGEKVDTQISTVPSGSLALDAALGVGGYPRGR IVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPN TGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSG TIAKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGN RVKIKVVKNKVAPPFKVAEVDIMYGQGISQSGELLDMAADQDIVDKAGAWYSYHGEKIGQ GRENAKKYLEEHPDVSEDIRTQVRKAYGIDAESLEEKENPEKVKEQRAKKAAPGEEKPAE PASPEKTDK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:37:42 2011 Seq name: gi|300496264|gb|AEAT01000107.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00255, whole genome shotgun sequence Length of sequence - 681 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 138 - 416 113 ## LA2_04410 IS4 family transposase Predicted protein(s) >gi|300496264|gb|AEAT01000107.1| GENE 1 138 - 416 113 92 aa, chain + ## HITS:1 COG:no KEGG:LA2_04410 NR:ns ## KEGG: LA2_04410 # Name: not_defined # Def: IS4 family transposase # Organism: L.amylovorus # Pathway: not_defined # 19 92 263 336 456 69 41.0 4e-11 MTFNITNSAKQKKLHPEYHKINAPNRRYKDKYSPKYRTAHWDFESFCPVNCRIVKLKIND PLSGKTKWEVLATNLSPSDFPLSEMRNLYHLR Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:37:45 2011 Seq name: gi|300496262|gb|AEAT01000108.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00128, whole genome shotgun sequence Length of sequence - 867 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 43 - 669 505 ## Ldb1987 putative transposase 2 1 Op 2 . + CDS 638 - 865 174 ## Ldb2174 hypothetical protein Predicted protein(s) >gi|300496262|gb|AEAT01000108.1| GENE 1 43 - 669 505 208 aa, chain + ## HITS:1 COG:no KEGG:Ldb1987 NR:ns ## KEGG: Ldb1987 # Name: not_defined # Def: putative transposase # Organism: L.delbrueckii # Pathway: not_defined # 1 197 376 572 583 375 100.0 1e-103 MDKIKGREYKLPKRYEHYFKLTYHKDKFYGYEEREDVIERELQLCGYFAIVTSEKMTASE ALNLYKSRDISEKLFGSDKTFLGNRSFRVASSQAAEAKIFIQFIALIIRARIYTLLRKRK AEMPGKPNYLSVPSALKELEKIELIRQPNGNYKLDHAVTATQKVILGAFGLDEEWIKAQA RQIGKDIQNAAMPEEQKDDDEDAENEEY >gi|300496262|gb|AEAT01000108.1| GENE 2 638 - 865 174 75 aa, chain + ## HITS:1 COG:no KEGG:Ldb2174 NR:ns ## KEGG: Ldb2174 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 2 75 1 74 74 82 100.0 8e-15 MMKMPRTKNIKTIEAEISQTEEQLRRLKERCDKASQKLDALYELKKHREQEELLKAIDKS TRTKAEILAFLESHA Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:37:52 2011 Seq name: gi|300496261|gb|AEAT01000109.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00196, whole genome shotgun sequence Length of sequence - 585 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + SSU_RRNA 30 - 585 99.0 # CR954253 [R:1787059..1788619] # 16S ribosomal RNA # Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:37:53 2011 Seq name: gi|300496259|gb|AEAT01000110.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00041, whole genome shotgun sequence Length of sequence - 864 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 86 - 863 881 ## LDBND_0820 membrane protein Predicted protein(s) >gi|300496259|gb|AEAT01000110.1| GENE 1 86 - 863 881 259 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0820 NR:ns ## KEGG: LDBND_0820 # Name: not_defined # Def: membrane protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 259 1 259 591 497 99.0 1e-139 MKRKYLWVLALFLASFSAAFLPEKVFADYDLTKMDVTAIVNSDGSLSMTRKIVYDFDDSA NGVYYTQNLASGQKVSGQSVEVKDLASGKTVKPALNNQADSGNVYHFNKDGNSYKFKVYH HVDDGKVQVVYRYKISGAVDSYEDASELNFKIVGDGWDKEISNVTATVRFQDKKLSFLKG WAHVNANGHLTVDKEKGLVKAEVATLPEATFLELHLLFPNSLVSQNKKQHSGEIAAKVVD QEKALAKETAAKKARHNVY Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:37:58 2011 Seq name: gi|300496257|gb|AEAT01000111.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00157, whole genome shotgun sequence Length of sequence - 637 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 600 283 ## COG3464 Transposase and inactivated derivatives Predicted protein(s) >gi|300496257|gb|AEAT01000111.1| GENE 1 1 - 600 283 199 aa, chain + ## HITS:1 COG:RSc2573 KEGG:ns NR:ns ## COG: RSc2573 COG3464 # Protein_GI_number: 17547292 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Ralstonia solanacearum # 3 191 238 397 406 69 25.0 4e-12 NRFHIIKDFNDKVVSEIRKDEQRRLAEEGSPEAAKLLKNSRYILMSKRSTLVQKDEDARK GKLVSTAGKIFNTPEIKAHGGNEVWYDELLEENKLFFTIDLVKDLLDQAYNSHDEVEMCV RLEEIIDICKATKNSHFIWFARLLYRHLRGIYTFAKYGISTGKLEGINNKIKTERRKGYG YPDDEYFFLRLMELSRKAS Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:37:59 2011 Seq name: gi|300496255|gb|AEAT01000112.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00028, whole genome shotgun sequence Length of sequence - 1898 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 241 - 277 6.5 1 1 Op 1 2/0.000 - CDS 284 - 1201 313 ## COG0582 Integrase 2 1 Op 2 . - CDS 1243 - 1848 140 ## COG0732 Restriction endonuclease S subunits Predicted protein(s) >gi|300496255|gb|AEAT01000112.1| GENE 1 284 - 1201 313 305 aa, chain - ## HITS:1 COG:lin0524 KEGG:ns NR:ns ## COG: lin0524 COG0582 # Protein_GI_number: 16799599 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 2 305 5 308 309 366 60.0 1e-101 MRKKQILLHDYFAQWIEVYKDGAVRERTLDKYWLSHRHLQEIAPNLKLVDITRLEYQQIL NTFAQTHEKATVMDFHHQLKAMLLDAYDEGYIQRDPTRKIVVKGKEPSEKKSKYLNEFEL KLLLRHLDLSTFPNFDWMILLIAKTGLRFSEALGLTKEDIDLEQQTINVDKTWDYKSYTG SFKQTKNASSVRKVPIDWKLAMQLNQVIQDLPNGEPIFAQKRVFNSTVNNLLKKHCEELN IPVISVHGLRHTHASLLLFAGVSIASVARRLGHADMTTTQQTYLHIIQELENKDNTKIMQ HLAAL >gi|300496255|gb|AEAT01000112.1| GENE 2 1243 - 1848 140 201 aa, chain - ## HITS:1 COG:ECs5306 KEGG:ns NR:ns ## COG: ECs5306 COG0732 # Protein_GI_number: 15834560 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Escherichia coli O157:H7 # 20 193 103 281 584 70 29.0 2e-12 MFANKNKSGDPDVRFKGFDERWERHILNDLAIFNPKGTLPTSFEYVDLGSVIGVEMISHK TISKFDAPSRAQRLAQVGDLFYQTVRPYQQNNYLFDNKDNAYVFSTGYAQLRPLIDGYFL LCLVQTKSFVRKVMNACTGTSYPAINSQDLAQIGVNIPINSKEQRLIGNLYKVIDNLITL YQQKLDDLNTIKQSLLQKMFI Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:37:59 2011 Seq name: gi|300496253|gb|AEAT01000113.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00236, whole genome shotgun sequence Length of sequence - 826 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 60 - 824 554 ## COG3328 Transposase and inactivated derivatives Predicted protein(s) >gi|300496253|gb|AEAT01000113.1| GENE 1 60 - 824 554 254 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 254 139 391 391 217 42.0 2e-56 KQVASQVESYHQRQLSDKFFCVYLDATYIPLRRDTYQREAVYVAVGIKPNGHKEIIDYRI APVENIEIWGEMISNFKERGLEQVELFLSDGFVGIKDMLKQYYPKSKFQRCLVHVMRNIK GKVRVSDRKEALDDFKQVHKQSSLKEAETVLHAFYDKYDSKYSSMIKNLQKIEEDLLVFY QYPKQIRPSIYSTNMIESINNMIKRKTKPKSEFPTEESLDNFLGVQAIGYNDRNANRSHK GFGQVTDTLESYFD Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:38:04 2011 Seq name: gi|300496239|gb|AEAT01000114.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00035, whole genome shotgun sequence Length of sequence - 14424 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 4, operones - 3 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 143 - 192 13.1 1 1 Tu 1 . - CDS 214 - 2796 3459 ## COG4485 Predicted membrane protein - Prom 2882 - 2941 5.3 + Prom 2803 - 2862 5.4 2 2 Op 1 1/0.000 + CDS 2882 - 4996 2949 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 + Term 5038 - 5072 -0.1 + Prom 5002 - 5061 2.7 3 2 Op 2 3/0.000 + CDS 5083 - 5232 264 ## PROTEIN SUPPORTED gi|104774328|ref|YP_619308.1| 50S ribosomal protein L33 + Term 5233 - 5278 3.8 4 2 Op 3 4/0.000 + CDS 5298 - 5858 644 ## COG0212 5-formyltetrahydrofolate cyclo-ligase 5 2 Op 4 3/0.000 + CDS 5851 - 6522 1116 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 6 2 Op 5 1/0.000 + CDS 6522 - 6749 341 ## COG4483 Uncharacterized protein conserved in bacteria 7 2 Op 6 . + CDS 6812 - 7213 783 ## COG0607 Rhodanese-related sulfurtransferase + Term 7221 - 7260 7.1 + Prom 7215 - 7274 1.8 8 3 Op 1 . + CDS 7294 - 8220 1258 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 9 3 Op 2 1/0.000 + CDS 8217 - 9473 1545 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance + Term 9504 - 9543 -0.3 + Prom 9477 - 9536 4.3 10 3 Op 3 6/0.000 + CDS 9611 - 10948 1884 ## COG0174 Glutamine synthetase + Term 10983 - 11021 2.9 + Prom 11088 - 11147 5.7 11 3 Op 4 . + CDS 11244 - 12419 1858 ## COG0477 Permeases of the major facilitator superfamily + Term 12435 - 12463 1.0 + Prom 12428 - 12487 6.8 12 4 Op 1 . + CDS 12520 - 12891 665 ## LBUL_1365 hypothetical protein 13 4 Op 2 . + CDS 12918 - 14369 2147 ## COG0531 Amino acid transporters Predicted protein(s) >gi|300496239|gb|AEAT01000114.1| GENE 1 214 - 2796 3459 860 aa, chain - ## HITS:1 COG:L48341 KEGG:ns NR:ns ## COG: L48341 COG4485 # Protein_GI_number: 15672817 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 12 852 2 864 883 200 25.0 9e-51 MYMSKIKRFFQKFGLKQLYACLAFALPALIFAGYFLSKKGNILTVDLGQQYVDFLAYYQQ NLFKDPSKLIYSFASGLGGSMLGTDSYYLLSPFNLLLLFFPQKFLPQGILLVISCKIGAI GLSAYLVWGKKYQLAKEYVLAASLAFALCGFVVANNLNLMWLDSLVLLPWLQEAIDRLLS GEKNHLVLITFLLWLTNFYTGYMTLLFGLLYLLVGLATNREPKKRFWAYFKGSFFGSCLA GVNLWPTFLELLAGKTDADISWKLNFQFPPYQLIAKFIDGAYSFHEMSDGLPNIFISSCF ALLALLFIFNSQFSKREKLARGLLLAFLVLSLSFTPLVLIWHLGQFPVWYPARFSFLVSF YALNLALENMDREPGFNLQQKILAALLGASVSIYLAINPDKLEFIRQDGQVATGLFLLAS LLFILFIYGQHYLAGHYALLLVVSEVTVNLIFSLNAISYQENKNYAKFEANVNQATSYLA KTDSSLYRTEKSFSRSDDDPFTGNYYGITTFNSISNSSTSSLLSRLGYVHNSNSYTNQGG TLLTDAFLGVKYYLEPNYSYDGVSAAQRMPYDNLNHRADLSSYYPIKQFKQISILKNKQA LPLIFASQSGQKKVKFLDNDPVHNQQKLWESLGLSGQLFKKVKSEIKLTNLKVNQSNPLV FKKANSAKPASVTFSLTPKSNDSYYLQLPDGFDFKTASLSVNDIFYNYESRDGQIRLVNI ASQNKKSKIKVTFNLTNSTLDLTDLIFWHFNNSAFKAGIKQLKAPELKLKQTGLQISSQT FKSQKKLWITTIPYSKNWLVYDNGKRVKTSKYAASLLAFNLKGGKHQLTLVYLPVSLIAG SLISLVTLAVYLLLKKKQRI >gi|300496239|gb|AEAT01000114.1| GENE 2 2882 - 4996 2949 704 aa, chain + ## HITS:1 COG:SP1673 KEGG:ns NR:ns ## COG: SP1673 COG0768 # Protein_GI_number: 15901508 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Streptococcus pneumoniae TIGR4 # 20 669 10 651 680 372 36.0 1e-102 MSYFRKNSGTGNSSQTANTPLRMKILVGVILILFAALIGQLAYLQLFYGSRFSAEVNATD ENTMTKSVPRGVMYDSQGRVLVGNKAENAITYMRSLSTTSKEMYKVANTLSNYIKITDEK PTKRQIADYYLADSSRAKKVLAALPKSQKKSSLSTSEINDNEVAYVENTLKPSLTSQEKT AALLYNMMSGATTLSTINLKSSGLSDKEIAQVGEHLSSMPGVGIGTDWNRYYPNGSSIKS IIGSVSTTKTGLPRDNLQYYLVNGYSRNDRVGISYLEKEYEALLKGTKASYKVTSNSRNE ITKTKQVYKGQSGASLKLTVDAKYQAAVTKALKQQFNSALRAGAASLSSGAYAIAMNPNT GAILAMSGISHDPSTGKITDNALGNINQSFVMGSVVKGAQVAGGLINKVITPTNNTLPDT AIYLPGTPVKKSVYPTGTFSSLTAASALEVSSNIYMMQLTLRWVKASYVAKQYIHMPDTA FETLRNNFAMFGLGQKTGIDLPGESSGIQGASTDSNGIILSGSVLDESYGNYDAYTPIQL VQYISTIANGGYRMQPYVVQSIGRTSSDGKHFYTYYNKKPTVQFKIPWTADELAVIKQGL YQVVHGSNAWGTAHALKNVKPSISAKTGTAQTFYYNTKTKKSTDKELINETMVGWASSNH PQIAFAVVFVGIDPNKEGNYNKNMAKSMVTTYYNMYKGKFSSTN >gi|300496239|gb|AEAT01000114.1| GENE 3 5083 - 5232 264 49 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|104774328|ref|YP_619308.1| 50S ribosomal protein L33 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 49 1 49 49 106 100 1e-22 MADNIILECTECGDRSYLSKKNKRKHPERLTLKKYCPVERQVTLHRETK >gi|300496239|gb|AEAT01000114.1| GENE 4 5298 - 5858 644 186 aa, chain + ## HITS:1 COG:lin1373 KEGG:ns NR:ns ## COG: lin1373 COG0212 # Protein_GI_number: 16800441 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Listeria innocua # 2 178 3 177 179 88 35.0 6e-18 MDKNTFRSWQRQRLADFAKTPAKKRQDQELTSLALQHPLVQEAKKIGLTIPMLLEVDING LIKELRGEGKELYLAKCHPGWQLDFLKWDEGAPLMQTKFGVWELAEEKEADNALDLLFVP GLAFSPAGKSRIGFGGGYYDRFLAQNSVQTLALVNSAMYFKTPVWPMEDHDQAMDDLIIV KEAGDE >gi|300496239|gb|AEAT01000114.1| GENE 5 5851 - 6522 1116 223 aa, chain + ## HITS:1 COG:lin1374_1 KEGG:ns NR:ns ## COG: lin1374_1 COG0705 # Protein_GI_number: 16800442 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Listeria innocua # 9 174 184 345 345 129 40.0 5e-30 MNNLRRNYMTTALVVVLFAVFLVETFMGGSESTSVLLKMGAMFNPAVVMEGQWWRLFTAQ FLHIGIMHIASNAIMIYYIGQYAEPVFGHWRFLLIYLLSGVGGSLLTLAFGNDQAISAGA STALFGLFGAMTCTGFKDKDNTLLSFLGRQALALAVINLVLDVFMPDVDILGHVGGLITG ALLAVILGDATYKGYGKGGRLLAAAGLIVYVVLILRLGMVVTV >gi|300496239|gb|AEAT01000114.1| GENE 6 6522 - 6749 341 75 aa, chain + ## HITS:1 COG:SPy1530 KEGG:ns NR:ns ## COG: SPy1530 COG4483 # Protein_GI_number: 15675429 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 4 65 1 62 67 63 62.0 1e-10 MTVLKNLYDVQQLLKKYGILVHLGKRKWDIELMAIELDNLYKAGLLEKKIYLNAKLVLKH EHEYEERLEREKRLD >gi|300496239|gb|AEAT01000114.1| GENE 7 6812 - 7213 783 133 aa, chain + ## HITS:1 COG:lin1388 KEGG:ns NR:ns ## COG: lin1388 COG0607 # Protein_GI_number: 16800456 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Listeria innocua # 21 130 16 125 126 100 47.0 7e-22 MTNFLIVLDVILGVILLGFLGFWAYNRIQAKRLGGELTNEEFKAGMRKAQIIDVREANEF KHEHIDGARNIPYTMFKYQYTELRPDLPVYLYSDSLTMTMRCASILRKHNFAKVFYLKDG FSQWDGRKKAAKN >gi|300496239|gb|AEAT01000114.1| GENE 8 7294 - 8220 1258 308 aa, chain + ## HITS:1 COG:BH2366 KEGG:ns NR:ns ## COG: BH2366 COG0324 # Protein_GI_number: 15614929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Bacillus halodurans # 2 296 3 298 314 249 46.0 4e-66 MQKVVAIVGPTAVGKTSLAIEIAKKLDGEIVSGDSMQIYKEVAIGTAKASREEQAEVKHY LVDAHSVFEDFSVKNFVDEARSAIGEIAGRGKLAIIAGGTGFYVNALLNDMQLGDKEEEA ASVDPEWEDFLAANGPQALWEELNKKDPEAAKKIPVANSRRSLRALSVISRTGGLFSKQQ AEIKPRYDYLIIGLNSDREAIYQRINQRVDLMMEAGLLEEARFVYEHRAGEHQVLQAIGY KEFFPYFAGEASLEACVTALKTASRRYAKRQLTYFRNKLPVEWYDPLTDPNCANRIAVRI EEWMNEEK >gi|300496239|gb|AEAT01000114.1| GENE 9 8217 - 9473 1545 418 aa, chain + ## HITS:1 COG:SA1148 KEGG:ns NR:ns ## COG: SA1148 COG4100 # Protein_GI_number: 15926890 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Staphylococcus aureus N315 # 6 418 2 410 412 424 50.0 1e-118 MRKLPEELKAILAEVDQEIAPRLREIDDQVVYNQGKVLKAFVDHQVAEADLKGTNGYGDD DIGREKLEAIYAQVFQTEDALVRPQFVSGTHTLAVALDGNLLPGETLTYLTGMPYDTMQQ VIGLGPKKRGTLIQKGINFSYVPLNEEGGVDYEEAEKVLKRDQPHIVVIQRSRGYDTRQS YTVDQIKEMTAFVKKVSPESLVFADNCYGEFSEKHEPTEYGVDFMAGSLIKNAGGGIAQT GGYIVGKEELVENAAIRLTAPGIGKEEGATLTNMHEFYEGFFLAPHTTGEAIKGMIFSAA LLEKMGCEVTPKWHEPRTDLIQTIIFNDPEKMINFTKEVQKNSPIDSFVEPIPSDMPGYE DKVIMAAGNFVSGSTMEFSADGPIRPPYALYMQGGLTYAHDRIAVTNAVNHLFFKENG >gi|300496239|gb|AEAT01000114.1| GENE 10 9611 - 10948 1884 445 aa, chain + ## HITS:1 COG:SA1150 KEGG:ns NR:ns ## COG: SA1150 COG0174 # Protein_GI_number: 15926892 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Staphylococcus aureus N315 # 3 442 4 442 446 518 54.0 1e-146 MSKVITEEEIQKDVEEKNVRFLRLAFTDINGTLKNLEVPVSQLDDVLGNQTRFDGSSIDG FVRLEESDMVLYPDLATWLVLPWTTVEEGTIGRLVCSVHNVDGTPFEGDPRNNLKKVIAE MEEMGFSDFEIGFEAEFFLFKEGKNGEETTKVSDHSSYFDMASEDEGAKCRREIVETLEK LGFRVEAAHHEVGDGQQEIDFRFDNALATADKLQTFKMVVKTIARKYHLHASFMAKPVEG LAGNGMHTNMSLLKDGKNAFYDKDGQYHLSTTALTFLNGILEHARAITCVANPTVNSYKR LIPGFEAPVYISWASRNRSPMVRIPNANEVGTRLEMRSTDPTANPYLLLSACLKAGLTGI KEGKLPMAPVTSNLFEMTDDERKELGIKPLPSTLHNAIKAFKEDEVVKSAFSEHIVDSFL ELKETEWALYTQSVSEWEVKRYFNY >gi|300496239|gb|AEAT01000114.1| GENE 11 11244 - 12419 1858 391 aa, chain + ## HITS:1 COG:L157472 KEGG:ns NR:ns ## COG: L157472 COG0477 # Protein_GI_number: 15672136 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 7 377 3 381 393 110 25.0 7e-24 MEKEKGKSIYSKDVILVMTASFLFLFGTMFNNPLINGYAESLGASSILAGVIVGIMSFAA MFLRPIAGNLTDKFSKYQLSFIGGVLILIGIVGYIVSPNGELLLLFRIINGTGFVLCTVC MTTWIAFLVPRQHVGSAMGLYGLMNALAMSIAPAISINLYKVIGYRKTMMLPAAATLIMI IIIQFVGNRAVPSPRQKEKKQFKMISVNALPVALLTTCFGIPYFVTQADIVTYVAKMHMP VAVGSYFFIYAIVLLLIRTFLKNYFDTVRFGVWFWLSLVATAIYLVLLAYMSSNWMMALG AAGMAVGYGLIYSVLQSTALLLSPANEQGLGSSTFYLGLDIAMAFGPMLAGVVAKVLPGR WFYLVQLIVVPLALIVYLIWRKRLNGAIDNH >gi|300496239|gb|AEAT01000114.1| GENE 12 12520 - 12891 665 123 aa, chain + ## HITS:1 COG:no KEGG:LBUL_1365 NR:ns ## KEGG: LBUL_1365 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 123 1 123 123 222 95.0 3e-57 MEIEKLKADYINWLAGQTVFKPWSDTVFQVENELVDAYGRKPFVLVEKSGDKYTVTDDGY LMYKYNPTEENEDLNEYAAGMVMDAGFDFDEDNAVISQTVSEESLPGAINALMQLEIMIS FIA >gi|300496239|gb|AEAT01000114.1| GENE 13 12918 - 14369 2147 483 aa, chain + ## HITS:1 COG:STM0969 KEGG:ns NR:ns ## COG: STM0969 COG0531 # Protein_GI_number: 16764329 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Salmonella typhimurium LT2 # 9 473 5 470 473 322 37.0 1e-87 MDSLDETGKRKYISWPVIALMDFVTVIGFDDIIYNFQNQGLAVVSDWVLLLVLFVIPYEM MVGHLGSVFAKEGGGLSSWIRHTSGDKMGYITAWCYWVVSLPYLVDVANSTVISFAWLFK GRALDDNEMSNWVFALFTALIFVAFIFFQHKFANSLQWLSIIGGGAMFVMTILFVIMTFA YLGEGRSVATQPFHFKNFLPTFDMKFMMSLGLLIFAMNGSEFVAPYVNEMKNGPRDFPKA MYMLAAMTGFLTIFGSFSLGVFFNAHKLPDDLKMNGSYYAFKAMGDKFGMGNFFLYAFII TQALYMLAQLAVLVDGGARIFLSDTAKQYLPKQLTKVDKNGLPINGYWLTTFICSVLLFL SSTLPTVNDIFNQLLNLNGIVSPYVTGLLFWAFIKVRMHEEDYPSAYVYIKNRKFAIFVG WWCLIVTLTGATFGIVPIDAEFGTAKWTHMLILNIVEPLFMIALGVILPLIAKWQRKRDG EEG Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:38:10 2011 Seq name: gi|300496232|gb|AEAT01000115.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00217, whole genome shotgun sequence Length of sequence - 6158 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 3, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 200 - 238 7.9 1 1 Tu 1 . - CDS 256 - 459 266 ## COG0471 Di- and tricarboxylate transporters - Prom 497 - 556 3.5 2 2 Tu 1 . + CDS 546 - 1439 937 ## COG0583 Transcriptional regulator + Term 1476 - 1502 0.3 - Term 1684 - 1732 1.1 3 3 Op 1 18/0.000 - CDS 1848 - 2312 769 ## COG0054 Riboflavin synthase beta-chain 4 3 Op 2 15/0.000 - CDS 2327 - 3505 1616 ## COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase 5 3 Op 3 16/0.000 - CDS 3525 - 4139 684 ## COG0307 Riboflavin synthase alpha chain 6 3 Op 4 . - CDS 4132 - 5187 1035 ## COG0117 Pyrimidine deaminase - Prom 5437 - 5496 7.1 - TRNA 5582 - 5655 68.3 # Asp GTC 0 0 - TRNA 5659 - 5731 89.1 # Val TAC 0 0 - 5S_RRNA 5674 - 5725 92.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. - TRNA 5734 - 5807 69.7 # Arg ACG 0 0 - TRNA 5843 - 5914 79.2 # Gly GCC 0 0 - TRNA 5934 - 6007 86.5 # Pro TGG 0 0 - TRNA 6011 - 6083 79.9 # Asn GTT 0 0 - 5S_RRNA 6091 - 6157 100.0 # CR954253 [R:1467292..1467408] # 5S ribosomal RNA # Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 # Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. Predicted protein(s) >gi|300496232|gb|AEAT01000115.1| GENE 1 256 - 459 266 67 aa, chain - ## HITS:1 COG:CAC1590 KEGG:ns NR:ns ## COG: CAC1590 COG0471 # Protein_GI_number: 15894868 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Clostridium acetobutylicum # 1 67 410 476 476 65 47.0 3e-11 MAALMLAFCGSVFLSTSTYSAGPAAMLSGTGYVSNKDWWKLSAIIGVIFNVIWLGGGLLW TKCIGYW >gi|300496232|gb|AEAT01000115.1| GENE 2 546 - 1439 937 297 aa, chain + ## HITS:1 COG:CAC1588 KEGG:ns NR:ns ## COG: CAC1588 COG0583 # Protein_GI_number: 15894866 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 11 268 1 258 293 106 23.0 4e-23 MFYDKRKDFYMGFRDLRYFIDLVESESYHATAQKNQVTQPAISAMVKRLEEECGVQLIFK KSSRAPLVITPAGQVLYKRAKKLVKEENSIKIEVKRANANNFRLGYSELAGKAWLASVIT HLNQGRMLANIETKEENSHLLEQHLREGRFDVIVFSRLGDESLPGIKTTPLQRYQYVLVV AEDSSLAQLDEIRIAQIKDTPLIMRHKRFLSRTSLDRLFAKTGFQPTKKLIVDNIDATLQ LVRQGMGVSYLMDIAVENVPGVKAIPLVPSQRSYCYSSLGIRENFIPNEVQKQYLRS >gi|300496232|gb|AEAT01000115.1| GENE 3 1848 - 2312 769 154 aa, chain - ## HITS:1 COG:L0166 KEGG:ns NR:ns ## COG: L0166 COG0054 # Protein_GI_number: 15672978 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Lactococcus lactis # 1 154 1 154 154 140 43.0 9e-34 MAVIQGDFKQVHGKVAIVVSRFNELVTKSLATGAAETLLKFGIKEEDIDTYWVPGAFELG FAAKKLVDSGKYDGIMTLGAVIKGETDHYAMIISNVTSAVMELNLAGKVPVTFGMLTTEN IDQALQRSGLKVGNEGSATAQSLLEMMSLQEKIG >gi|300496232|gb|AEAT01000115.1| GENE 4 2327 - 3505 1616 392 aa, chain - ## HITS:1 COG:BH1556_1 KEGG:ns NR:ns ## COG: BH1556_1 COG0108 # Protein_GI_number: 15614119 # Func_class: H Coenzyme transport and metabolism # Function: 3,4-dihydroxy-2-butanone 4-phosphate synthase # Organism: Bacillus halodurans # 6 197 9 200 207 219 57.0 1e-56 MDVKKIQDAIAWMKQGGLVIVADDEDREAEGDMIGLGSKVTPEKINFMTKHARGLLCTSI GREIAERLELPQMWQDNTDPFGTAFTVSVDYKTTTTGISAYDRATTIKALADPEAKPEDF FKPGHCFPLVAKDGGVLERNGHTEASVTLARLAGEAEVAYICEILKEDGHMARRPELEEI AKEYDLPYFTIAELQEYCRSFASSRSEFVKLPTDYGDFEIKDYGNGNLVIKKGEIAKNEP VMLRIHSKCLTGDVFGSKRCDCGHQLHQAMRRIEEKGSGLILYLNQEGRGIGLTNKLRAY ALQDQGHDTYDANLLLGFAPDERKYDVAAKMIKDLGIKQVQLLTNNPDKIKQLEEAGVEI TDRLPLEIAATAEDRRYLETKRDRFKHMLVSL >gi|300496232|gb|AEAT01000115.1| GENE 5 3525 - 4139 684 204 aa, chain - ## HITS:1 COG:Cgl1558 KEGG:ns NR:ns ## COG: Cgl1558 COG0307 # Protein_GI_number: 19552808 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase alpha chain # Organism: Corynebacterium glutamicum # 1 191 1 190 211 160 45.0 2e-39 MFSGLVSGKARIQRLEQEGKTIVLTVKTFPENLAGVKIGDSIAVNGCCLTVEAFSKDSFT VTMMPQTFAKTTFKNLQAGDQVNMERSVPVGGRFEGHIVSGHVDETVEVVDLKQNENALE LRFFLPDRLKKQVVPQGSVAINGTSLTVMNTGDDWFSVGLIPHTQDETNLSGLQVGDQVN LETDVLGKYVEANLAAFLKNELDK >gi|300496232|gb|AEAT01000115.1| GENE 6 4132 - 5187 1035 351 aa, chain - ## HITS:1 COG:L0163_1 KEGG:ns NR:ns ## COG: L0163_1 COG0117 # Protein_GI_number: 15672975 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine deaminase # Organism: Lactococcus lactis # 1 143 1 142 142 150 50.0 3e-36 MASDEEYMRLAIAAARKAGNATWRNPRVGSCLVKDGKVLATGFHQHYGGFHAERDTISKL TPEQLSNSTIYVTLEPCCHYGKQPPCTQLIIDSGIKRVVVGATDPHSLVTGKGIAALRQA GLEVSTGLLAKEASQLNDHYNYFYQTGLPYVTLKQAMTLDHMLAKKGERTAITGAEAWTR VHQERAGYQAVLIGSETAIIDDPLLLTSEDLVHPPVRVVLDRRGRLLEHLDLRLFSDKRA ETWILTENPDFLEQDMPKQVKIFALPDGKISTSIKILADQGVQSVYAEGGAHLQESLLAA GLVNDVISYVAPRFLGRGTEAAVAAEALDLKDVQTEQVGDDVRIYGRIKDV Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:38:11 2011 Seq name: gi|300496230|gb|AEAT01000116.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00253, whole genome shotgun sequence Length of sequence - 917 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 771 420 ## LDBND_1837 transposase dde domain Predicted protein(s) >gi|300496230|gb|AEAT01000116.1| GENE 1 3 - 771 420 256 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1837 NR:ns ## KEGG: LDBND_1837 # Name: not_defined # Def: transposase dde domain # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 256 144 399 461 514 100.0 1e-144 MTYKKGFRMMTMGWTDGSTFVPIASSLLSSKNDQNVIGTTKKIDKRTIASKRRIMAQSKG TDVVIQLLDQALKAGLTAKYVMFDTWFSNPHQIVQISQRGLNVIAMVKKSSKITYEFEGK RMNVKQIFNACKKRRGRSRYLLSVPVKVGDPAKDGAQIDARIVCVRNRSNRKDWIALICT DMTIDENEIIRIYGKRWDIEVFFKTCKSFLKLGTEYHGLSYDALTAHTAFVFLRYMFMSV EKRDDEDDRTMGELFY Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:38:17 2011 Seq name: gi|300496223|gb|AEAT01000117.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00051, whole genome shotgun sequence Length of sequence - 8989 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 5, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 821 292 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase - Term 903 - 950 2.2 2 2 Tu 1 . - CDS 981 - 2009 332 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase - Prom 2109 - 2168 4.6 3 3 Tu 1 . - CDS 2176 - 3273 7 ## COG3764 Sortase (surface protein transpeptidase) - Prom 3319 - 3378 4.7 - Term 3341 - 3393 7.0 4 4 Tu 1 . - CDS 3413 - 4930 1119 ## LKI_08030 cell wall surface anchor family protein - Prom 4967 - 5026 8.7 5 5 Tu 1 . - CDS 6195 - 8813 668 ## COG4932 Predicted outer membrane protein - Prom 8894 - 8953 4.9 Predicted protein(s) >gi|300496223|gb|AEAT01000117.1| GENE 1 3 - 821 292 272 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 48 260 112 313 317 117 36 4e-26 ELHRSECGRKSLFLRRHKFIDYVSHCFHNRGWSLDACVGYALAKGIFQKDQVVSTKTLYN YVDLGLMDIKSGDLPEKVKRNTKTRRARVNKRILGRSIDERSPRIESRKDFGHWECDLVL GHKTKDDDVLLTLCERKTRQFFMIKIEDKTSASVMKAFDKLREYYGSKWNQIFKSITTDN GSEFADLSDLEQVSKTLVYYARPYTSCDKGSVERHNGLIRRYIPKGDHMDKYSVEDIAKI EVWCNSLPRKILNYKTPEEYFDTELDRIYRRR >gi|300496223|gb|AEAT01000117.1| GENE 2 981 - 2009 332 342 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 34 338 31 314 317 132 32 9e-31 MTQTKNIMPKHYQQLQSFERSQIECLTRLGFGVRQIASRLHRSPSTISRELKRGLTTQID SQKHRSYQGYFAERGAAYYREQRAKCHPKGLLQRAAVFFKSLPKALKAKPRVFSVDTYVH YFKAHYPGFPCPSTATVYRYIEAGKLPELHSYDLPMKLRRRVQRPNHRHARLNKKRLGQS IEDRPAVVRKRQELGHWEGDLVKAKRVESEPALMTLTERVSRMEIIVKLPDYRAETCRQA LQDTIDDYGAENFRTITFDNGSEFASLNQVQGTEIYFAHPYSPWERGTNENVNGQLREFF PKGHSFKNLSLVDLQLVQDTLNHRPRRCLSYSCPADVMPQLV >gi|300496223|gb|AEAT01000117.1| GENE 3 2176 - 3273 7 365 aa, chain - ## HITS:1 COG:SP0467 KEGG:ns NR:ns ## COG: SP0467 COG3764 # Protein_GI_number: 15900383 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Streptococcus pneumoniae TIGR4 # 31 244 11 237 261 164 45.0 2e-40 MVIIFTVGVIIALYPFYVEAINNYIDQQRINEVDKTNSELSAQKRKALETRNRRLAENGL HPENDPFAGSSKRTQVFLKKNLIGSISIPKIKANMPLFDTTNAKTLNYGATVLQGTSFPL GGKNTHTVIAAHRGLPSRKLFTDLNYVKKGNIFVLTVYKKKLAYKVYKIQVVKPNQTSVL KIISGKDLATLLTCTPYMINSHRLLVTGYRIPYTPKIAKDVNHANNANNANQLLILIAII LLLLAILGYIIKLIHQGMLRKNRFSLIFYRLSQQGDVVKNTTYALQTRVLRRPIYRNGKK FIVTADDDGKVNFNNLPGGLYHVQEIFPNDKIGCTAGIKKLHQQTAKMYLKDKNRSLFKL YHDDL >gi|300496223|gb|AEAT01000117.1| GENE 4 3413 - 4930 1119 505 aa, chain - ## HITS:1 COG:no KEGG:LKI_08030 NR:ns ## KEGG: LKI_08030 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: L.kimchii # Pathway: not_defined # 8 505 9 508 508 473 57.0 1e-131 MKNKLKLLITGLIMILPLLLLSFATPQKVSAADSVKVTLHKRVFDSAQEAKQNTGEIMND FGGTGLNGVTFKAYNVTDHYLSLRKSGDSAQDAVTAIQSDAKDSDNLPSYAGSAVATETT ATSKGEDGIAAFDNLNLKDSDGNYQTYLFVETNSPTYVTQQAAPIVLTMPIYKTSDTSAI NHDIQIYPKNVKSTPITKDLDEASKKDLAVTLPDGSTIYNAQYGQSFGYNIKVNVPWNIK DKDTFNVVDKPDTGIDIDASTVSIDGLTKGTDYTVNKKDNGYQVVFNITTSAAVQALAGK SLTITYKATLTNNATPDTAIGNTATLNIGNGTDITSTPANGPKIYTGGAQFVKKDSQSNK TLAGAKFQLVKVDSNGNIVSYATQASDSSYTWSDSATGATTYTSDTNGLVALKGLSYSDK LDSGESYALLEIQAPDGYAKLDSPVKFSITKGSFDDSNKITIDNTKEGLLPSTGGKGIYI FLAIGIVIMIVAFGGYKAIKKHEEI >gi|300496223|gb|AEAT01000117.1| GENE 5 6195 - 8813 668 872 aa, chain - ## HITS:1 COG:BH0361 KEGG:ns NR:ns ## COG: BH0361 COG4932 # Protein_GI_number: 15612924 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Bacillus halodurans # 607 797 1382 1542 1661 61 26.0 6e-09 MSMLTGLVTSGSSVVTAAANIRPTYQTDANGTYPTNSWQVTGQQNVINQRGGDQVLGWDN NTIWNGDATDTTNSYLKFGDPNNPDYQIRKYAKETNTPGLYDVYLNVKGNTQQNVKPVDI VLVVDMSGSMESNSRGTNRADAVRTGVKNFLTSIQNAGLGDYVNVGLIGFSSPGYIGGGN KTTGPGYIRVGLGKVGNTKQQQAINDALSPMFQGGTYTQIGLRQGSAMLNADTSGNKKMM ILLTDGVPTFSNKVINSEWINGTLYGTNFGSSRDKPGDTARLRWPYSDKSGHRIYDTWPA TLGEAKIAKDSGNEVHALGIQLADDRYYADDGYYMTYMTKEKIRKNMQLITNSPDLYEDA DSADAVEAYLKNQAKDIIKKFNTVADGTITDPIGTQFQYANNQATVTSVGKQTVPASELP SAAIQDGQLTVNHMNLGRDQEVQIHYQERINTESNNFVPDKWYQMNGATTLTPNGDDPSN KVDFGIPSAKAPGTKLTINKVWNMLPNDNKIPDSIDFTVNRGNTTDNNAWTQATGSLSKT QNWTGTFDKLSHNNSNVYLPKFNNHGQDFTYNLSEDNVAGFSSSINQVLNNFTITNNELG LAVQKFDSGGNILTGSQFTLVKDTDNWQATDSSFTPESINGNDNPIPIKPGYYELKESTA PVGYSLDASTIKFQVTENGQWLDQQGTPIRNNTLPSSDGFYVNNQNGNDILTYAKHDNIK PFTLTVNKIDKVTNQSVKGAEFQLTNSDTNQTIQPDESGDTATFTFNNLQPGNYVLSETK APTDYAPLSSGINFSIDNTGKVTIPDGYDSNSELTAGNSNNTISLTVPDTPTSGQLPATG GPGITIILVTGLIIMITTAAGIIFISRRRWEV Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:38:51 2011 Seq name: gi|300496132|gb|AEAT01000118.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00111, whole genome shotgun sequence Length of sequence - 93027 bp Number of predicted genes - 86, with homology - 86 Number of transcription units - 49, operones - 24 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 266 320 ## LBUL_0978 Na+-driven multidrug efflux pump - Prom 385 - 444 3.5 + Prom 256 - 315 3.5 2 2 Tu 1 . + CDS 364 - 1101 810 ## COG0789 Predicted transcriptional regulators + Term 1110 - 1160 5.2 + Prom 1325 - 1384 7.1 3 3 Tu 1 . + CDS 1499 - 2065 715 ## COG0582 Integrase + Term 2227 - 2261 5.3 - Term 2215 - 2249 1.5 4 4 Tu 1 . - CDS 2257 - 2727 344 ## LDBND_1013 acetyltransferase, GNAT family - Prom 2755 - 2814 6.1 5 5 Op 1 45/0.000 + CDS 3032 - 3946 871 ## COG1131 ABC-type multidrug transport system, ATPase component 6 5 Op 2 . + CDS 3943 - 4803 770 ## COG0842 ABC-type multidrug transport system, permease component + Term 4831 - 4872 5.8 + Prom 4849 - 4908 4.7 7 6 Op 1 . + CDS 4937 - 6325 1171 ## gi|300812885|ref|ZP_07093280.1| Rib/alpha-like repeat protein + Prom 6342 - 6401 7.4 8 6 Op 2 . + CDS 6486 - 6950 490 ## LDBND_1016 hypothetical protein + Term 6960 - 7007 10.3 9 7 Tu 1 . + CDS 7115 - 7423 191 ## LGAS_0607 phage Mu protein F like protein + Prom 7604 - 7663 7.8 10 8 Op 1 . + CDS 7704 - 8123 359 ## Ldb1085 hypothetical protein 11 8 Op 2 . + CDS 8136 - 8534 388 ## COG0394 Protein-tyrosine-phosphatase 12 9 Tu 1 . + CDS 8765 - 9073 114 ## LDBND_1019 hypothetical protein + Term 9078 - 9134 8.6 + Prom 9135 - 9194 6.6 13 10 Op 1 36/0.000 + CDS 9235 - 9987 328 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 14 10 Op 2 . + CDS 10010 - 11887 2526 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 11908 - 11949 6.3 - Term 11896 - 11937 2.5 15 11 Tu 1 . - CDS 11951 - 12127 252 ## LDBND_1022 hypothetical protein - Prom 12163 - 12222 5.7 16 12 Tu 1 . - CDS 12370 - 13218 246 ## COG0583 Transcriptional regulator + Prom 13211 - 13270 8.2 17 13 Tu 1 . + CDS 13349 - 14818 680 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 14827 - 14874 8.4 - Term 14817 - 14861 7.1 18 14 Tu 1 . - CDS 14880 - 15803 215 ## COG3600 Uncharacterized phage-associated protein - Prom 15936 - 15995 6.0 + Prom 16118 - 16177 3.8 19 15 Tu 1 . + CDS 16381 - 16563 133 ## Ldb1099 hypothetical protein + Term 16593 - 16636 1.3 20 16 Tu 1 . - CDS 17292 - 17849 960 ## PROTEIN SUPPORTED gi|116514090|ref|YP_812996.1| acetyltransferase - Prom 17888 - 17947 6.6 - Term 18037 - 18070 3.8 21 17 Op 1 . - CDS 18075 - 18488 534 ## LDBND_1025 hypothetical protein - Prom 18568 - 18627 3.4 22 17 Op 2 . - CDS 18643 - 19230 850 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - Prom 19269 - 19328 7.6 - Term 19304 - 19334 2.0 23 18 Op 1 . - CDS 19347 - 20528 1074 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 24 18 Op 2 6/0.000 - CDS 20565 - 21344 1127 ## COG0289 Dihydrodipicolinate reductase 25 18 Op 3 . - CDS 21346 - 22275 1141 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 26 18 Op 4 6/0.000 - CDS 22298 - 23452 1221 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 27 18 Op 5 . - CDS 23513 - 24226 920 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase + Prom 24560 - 24619 11.0 28 19 Op 1 . + CDS 24739 - 26103 1876 ## COG0527 Aspartokinases 29 19 Op 2 . + CDS 26114 - 27100 1117 ## COG0253 Diaminopimelate epimerase + Term 27137 - 27187 0.3 30 20 Op 1 . - CDS 27147 - 28415 1229 ## LDBND_1035 hypothetical protein 31 20 Op 2 . - CDS 28475 - 28651 136 ## LDBND_1036 vwa domain containing coxe-like protein - Prom 28699 - 28758 1.8 - Term 29132 - 29166 2.9 32 21 Tu 1 . - CDS 29205 - 30536 388 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 - Prom 30564 - 30623 6.3 - Term 30620 - 30651 1.1 33 22 Op 1 . - CDS 30663 - 31097 477 ## LDBND_1039 hypothetical protein 34 22 Op 2 . - CDS 31110 - 31550 568 ## COG3279 Response regulator of the LytR/AlgR family - Prom 31671 - 31730 5.0 - Term 31650 - 31692 11.2 35 23 Op 1 . - CDS 31865 - 32224 410 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 36 23 Op 2 . - CDS 32229 - 32897 252 ## PROTEIN SUPPORTED gi|241889384|ref|ZP_04776685.1| 30S ribosomal protein S8 37 23 Op 3 . - CDS 32911 - 33684 726 ## COG1434 Uncharacterized conserved protein 38 23 Op 4 . - CDS 33677 - 34249 328 ## COG1247 Sortase and related acyltransferases - Prom 34287 - 34346 3.9 39 24 Op 1 . - CDS 34379 - 35029 239 ## LDBND_1048 methylase 40 24 Op 2 . - CDS 35113 - 39546 2782 ## LDBND_1049 DNA or RNA helicase of superfamily II - Prom 39569 - 39628 6.5 - Term 39604 - 39649 6.9 41 25 Tu 1 . - CDS 39665 - 40132 366 ## LDBND_1050 hypothetical protein - Prom 40339 - 40398 3.7 - Term 40348 - 40386 1.2 42 26 Op 1 . - CDS 40402 - 40593 128 ## LDBND_1052 hypothetical protein 43 26 Op 2 . - CDS 40643 - 41488 782 ## COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF 44 26 Op 3 . - CDS 41533 - 42957 1434 ## COG0144 tRNA and rRNA cytosine-C5-methylases 45 26 Op 4 . - CDS 42950 - 43924 1181 ## LDBND_1055 hypothetical protein 46 26 Op 5 . - CDS 43924 - 44664 970 ## Ldb1173 hypothetical protein - Prom 44714 - 44773 1.5 - Term 44720 - 44758 5.2 47 27 Tu 1 . - CDS 44775 - 44972 281 ## LDBND_1057 hypothetical protein - Prom 45009 - 45068 6.3 48 28 Tu 1 . - CDS 45120 - 45731 581 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) - Prom 45760 - 45819 2.6 + Prom 45670 - 45729 3.9 49 29 Tu 1 . + CDS 45810 - 46562 1000 ## COG2339 Predicted membrane protein + Term 46584 - 46624 8.0 - Term 46568 - 46616 4.7 50 30 Tu 1 . - CDS 46635 - 47546 1416 ## COG1897 Homoserine trans-succinylase - Prom 47594 - 47653 8.1 - Term 47631 - 47670 6.8 51 31 Op 1 . - CDS 47705 - 49153 2014 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 49175 - 49234 2.6 52 31 Op 2 12/0.000 - CDS 49236 - 50756 1678 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 53 31 Op 3 . - CDS 50760 - 51683 1106 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components + Prom 51910 - 51969 5.8 54 32 Op 1 1/0.000 + CDS 52015 - 52473 552 ## COG1959 Predicted transcriptional regulator 55 32 Op 2 . + CDS 52556 - 52975 552 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Term 52999 - 53048 3.0 - Term 52771 - 52795 -1.0 56 33 Tu 1 . - CDS 53037 - 53948 933 ## COG0501 Zn-dependent protease with chaperone function - Prom 53977 - 54036 3.7 57 34 Op 1 . - CDS 54678 - 55385 726 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 58 34 Op 2 . - CDS 55472 - 55870 476 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities - Prom 56044 - 56103 4.2 - Term 56129 - 56164 5.1 59 35 Tu 1 . - CDS 56174 - 62056 6592 ## COG1404 Subtilisin-like serine proteases - Prom 62134 - 62193 7.3 - Term 62469 - 62504 4.0 60 36 Op 1 . - CDS 62508 - 63011 574 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Term 63020 - 63066 4.2 61 36 Op 2 . - CDS 63092 - 63592 882 ## LDBND_1070 hypothetical protein - Prom 63736 - 63795 7.2 + Prom 63851 - 63910 6.7 62 37 Tu 1 . + CDS 64018 - 64641 302 ## PROTEIN SUPPORTED gi|154175107|ref|YP_001408238.1| ribosomal protein L22 63 38 Op 1 . + CDS 65008 - 66024 1433 ## COG2502 Asparagine synthetase A 64 38 Op 2 . + CDS 66100 - 67398 1896 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases + Term 67405 - 67462 13.2 - Term 67398 - 67440 7.1 65 39 Op 1 1/0.000 - CDS 67470 - 68468 1192 ## COG1609 Transcriptional regulators 66 39 Op 2 1/0.000 - CDS 68526 - 71549 3357 ## COG3250 Beta-galactosidase/beta-glucuronidase 67 39 Op 3 . - CDS 71553 - 73436 2657 ## COG2211 Na+/melibiose symporter and related transporters - Prom 73469 - 73528 5.5 - Term 73806 - 73844 6.4 68 40 Op 1 . - CDS 73875 - 74612 461 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit 69 40 Op 2 . - CDS 74605 - 75135 592 ## COG0789 Predicted transcriptional regulators - Prom 75232 - 75291 2.8 - Term 75234 - 75268 -0.5 70 41 Op 1 . - CDS 75431 - 75916 22 ## COG2963 Transposase and inactivated derivatives - Prom 75947 - 76006 6.7 71 41 Op 2 . - CDS 76015 - 78639 2561 ## COG0474 Cation transport ATPase - Prom 78847 - 78906 7.6 - Term 78965 - 79013 2.4 72 42 Tu 1 . - CDS 79038 - 79628 884 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 79671 - 79730 5.5 + Prom 79749 - 79808 6.0 73 43 Op 1 . + CDS 79837 - 80673 976 ## Ldb1214 hypothetical protein 74 43 Op 2 . + CDS 80716 - 81822 1032 ## LDBND_1093 lipoprotein + Term 81837 - 81880 8.1 - Term 81829 - 81864 6.4 75 44 Tu 1 . - CDS 81907 - 82950 1436 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - Prom 83078 - 83137 4.5 + Prom 83042 - 83101 6.9 76 45 Tu 1 . + CDS 83132 - 84472 1550 ## COG0534 Na+-driven multidrug efflux pump + Prom 84592 - 84651 3.1 77 46 Op 1 . + CDS 84865 - 85104 218 ## Ldb1214 hypothetical protein 78 46 Op 2 2/0.000 + CDS 85175 - 85741 938 ## COG0681 Signal peptidase I 79 46 Op 3 . + CDS 85795 - 86364 793 ## COG0681 Signal peptidase I 80 46 Op 4 . + CDS 86434 - 86613 355 ## Ldb1216 hypothetical protein + Term 86624 - 86653 3.5 - Term 86935 - 86976 7.2 81 47 Op 1 . - CDS 87000 - 88238 2097 ## COG2195 Di- and tripeptidases 82 47 Op 2 9/0.000 - CDS 88282 - 89079 957 ## COG0327 Uncharacterized conserved protein 83 47 Op 3 . - CDS 89072 - 89839 1010 ## COG2384 Predicted SAM-dependent methyltransferase 84 48 Tu 1 . - CDS 90040 - 91338 583 ## COG0675 Transposase and inactivated derivatives - Prom 91376 - 91435 5.5 + Prom 91599 - 91658 6.7 85 49 Op 1 . + CDS 91704 - 92144 518 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 86 49 Op 2 . + CDS 92144 - 92971 1347 ## Ldb1221 hypothetical protein + Term 92979 - 93026 4.8 Predicted protein(s) >gi|300496132|gb|AEAT01000118.1| GENE 1 2 - 266 320 88 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0978 NR:ns ## KEGG: LBUL_0978 # Name: not_defined # Def: Na+-driven multidrug efflux pump # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 16 88 1 73 429 120 94.0 1e-26 MTEELKMKVWAFSLPMISELFVQQLYSVIDMAIIGRYLGARELGAVGNAANIIMLFLVVS GGFEMAVDVMVSRLLGAGKNKEKVAIAR >gi|300496132|gb|AEAT01000118.1| GENE 2 364 - 1101 810 245 aa, chain + ## HITS:1 COG:CAC3443_1 KEGG:ns NR:ns ## COG: CAC3443_1 COG0789 # Protein_GI_number: 15896684 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 2 106 3 107 118 67 34.0 2e-11 MNEELIKTGDFAKMCAVTKKALYVYEAKGLLKPAVVKDNGYRYYRLEQVDQVATIRLLEK LGSSLQEVGDFFALKDLNERQKYLGKQQEAVEREMAELGKIKSSLEFFDQRISDLKQTGF KKVAVETCPEEYLEVSPFRHGVSLNPISFGPRYGVIVDDFEKAEISRFFKVVERKEGNYV KAAGKYACFYQEMENDDVAGNGPKALEYLRSKAKVVPPFYQEDFSSSVSGHDGSVIIKYS AKLDL >gi|300496132|gb|AEAT01000118.1| GENE 3 1499 - 2065 715 188 aa, chain + ## HITS:1 COG:CAC1595 KEGG:ns NR:ns ## COG: CAC1595 COG0582 # Protein_GI_number: 15894873 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Clostridium acetobutylicum # 16 179 20 178 186 83 37.0 2e-16 MKRALQFGTGTVTGQNRNGLRNAMIFVFGINTGLRISDIVKAKVSDIEDGEWYNLVETKT HKNRHAYIGNISQDLENYIAQMQLKPSDWLFPSRKGEGHIEGKSFYKDLKRAARQCEIDP NTVGTHTLRKTFGYHYIKSATTPAGDPDPRALYKLQKMLNHSSPTTTLRYIGLEDESMEE DLKSFRLG >gi|300496132|gb|AEAT01000118.1| GENE 4 2257 - 2727 344 156 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1013 NR:ns ## KEGG: LDBND_1013 # Name: not_defined # Def: acetyltransferase, GNAT family # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 156 1 156 156 298 97.0 7e-80 MQIRRAQVKDIPAIMKLLSQVLEIHASIRPDIFIPGTTKYTVEELTTIINDDQKAVFVAV DEDDQVLGYTFTQLQEQPFSTNMVQFKSLFIDDLCVDSTQRSQGVGRALLDYVKAEAKRL GCYEVTLNVWEGNDSAINFYKKNGLKVKETNIEFIL >gi|300496132|gb|AEAT01000118.1| GENE 5 3032 - 3946 871 304 aa, chain + ## HITS:1 COG:PH0913 KEGG:ns NR:ns ## COG: PH0913 COG1131 # Protein_GI_number: 14590767 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Pyrococcus horikoshii # 4 304 6 309 324 238 44.0 1e-62 MKNAIEVRNLSKSYGDLKVVNDISFAVREGELFAFLGPNGAGKSTTVDCLSTLTKFDSGE IKLAGLNMKTQAQEIKQRIGIVFQEGLLDKRLTVLENLTLRAGFYYHSKAEVKAAVARAS EYTEINDLLKRQYGKLSGGQRRRVDIARALLNTPKILFLDEPTTGLDPQTRQHIWETIQR LQKEQGMTIFLTTHYMAEASAADYVVILDHGKIVAEGSPISLKEFYSYDRLKLYPKKEQN LDNILSSLSLNWNKAADHYEVELRNTMDAIDIVEGTRDQLQSFEVLHGTMDDVFLNITGR RLRE >gi|300496132|gb|AEAT01000118.1| GENE 6 3943 - 4803 770 286 aa, chain + ## HITS:1 COG:lin0986 KEGG:ns NR:ns ## COG: lin0986 COG0842 # Protein_GI_number: 16800055 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Listeria innocua # 4 282 1 282 284 165 36.0 8e-41 MSAMVKRNLKIYFRDKASVFFSMLSVIIIFALYILFIGDSVNSGLKFLPHPNRLMRAWML AGMLASASITTSLGAYGVMISDRENKAIKDFYSSPVSRRQVAGGYIVTGFIISIIMSIFT LIFGEIYLGLAGGAVLDIETLLKLFAVIVLSAFASSAIASFMISFLKTNSSYSAASTIVG TLIGFLVGAYIPIGSLPDNVQWLVKYFPCAHSAVLYRQLLMKPAIKANFANQPASVLKEI REMFGIVFVYNGHIAPAWVSVAVLLVTGVVFYLLAVLVMTRKQNEI >gi|300496132|gb|AEAT01000118.1| GENE 7 4937 - 6325 1171 462 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300812885|ref|ZP_07093280.1| ## NR: gi|300812885|ref|ZP_07093280.1| Rib/alpha-like repeat protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Rib/alpha-like repeat protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 1 462 1 462 462 668 100.0 0 MKRKILAFVGCLSLVATTVKPVQASYLNGYDYAKMANKKVVVTKTMKVYRVKTGTSESKN HFYSAGNVKKGSVIYRSRWLMSTGSGWVIKSNKYKAGKRQFYFVSAPEKTKWFKAYKAKK KSVAKTKKTSKKTNKKVTKAKTVIKTSKAKKTVKKTAKKKSSKKTVKKATKKSAQKTVKK TTKKPAKTVKKTSKKPLTMAQKYNPKVKAWTTTLDWGETFSSDAYSYITNPWDLPSETNY TFVKPVNTKKGGSYQTNILVTYPDGSKETVGPVSFVVKSAQADAYNVTVKNTTVPYGHYI DIRKDIVTNPVGYFPNDPAEVELSTTEFYFSRADGNILANNPDTKVPGSHDYYIRVDYPD GSYQVSQKFTLTVSQPDNLVYHPALKSSSITLPVGTDIEADSYQLLKPQDFISNTADMPK GTKYEIRDDYSYDEQSSSYVTIKVTFPDDTTWESPMFLLTFN >gi|300496132|gb|AEAT01000118.1| GENE 8 6486 - 6950 490 154 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1016 NR:ns ## KEGG: LDBND_1016 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 154 1 154 154 253 98.0 2e-66 MPESKLENFVFTVMMAFVMVYAMICYNIALTIGGMRDAVLLDAFREMMIMWPVAIILEMF VFEKPVVYLTQRLITPETPILLIILIRCSITVCLMCPTMSLIATALFKNFQVAGFIGTWL QTAVINFPMAIGWQIFLCGPAVRFLFRTIFRKDN >gi|300496132|gb|AEAT01000118.1| GENE 9 7115 - 7423 191 102 aa, chain + ## HITS:1 COG:no KEGG:LGAS_0607 NR:ns ## KEGG: LGAS_0607 # Name: not_defined # Def: phage Mu protein F like protein # Organism: L.gasseri # Pathway: not_defined # 4 85 421 501 510 70 50.0 3e-11 MYQEVSENFVSDALERGYIQEKSYASSTQHGVYNAEDDVRMVIKKSNSGRQPNGFTLDTE NEVLFKRNTKFIATDTYVKDGKRYMRYFLVVLQTNGKRAESF >gi|300496132|gb|AEAT01000118.1| GENE 10 7704 - 8123 359 139 aa, chain + ## HITS:1 COG:no KEGG:Ldb1085 NR:ns ## KEGG: Ldb1085 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 2 138 24 160 164 245 94.0 5e-64 MLENEALFDGVVDELKKRGSIQDFEEKYGKITGRMMITETEIPEELGIEINDPDVHSFKA TFDFYNTAIGLALNVKTREAATKFWLTPQDDRNDVPTNSWFEFFAMILMEALDEGMDSIP TFSFVNDSSDLTISGLGLK >gi|300496132|gb|AEAT01000118.1| GENE 11 8136 - 8534 388 132 aa, chain + ## HITS:1 COG:CAP0105 KEGG:ns NR:ns ## COG: CAP0105 COG0394 # Protein_GI_number: 15004808 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Clostridium acetobutylicum # 3 131 2 129 136 149 58.0 9e-37 MTKAKVAFICTHNSCRSQIAEALGKKLAGDVFESYSAGTDLKDQVNPDAVRLIKEHYGID MLANGQKPKTLADLPAVDYVITMGCGVRCPYLPAKKRVDWGLEDPTGQDDETFMQVIKEI EDKVLKLKQELS >gi|300496132|gb|AEAT01000118.1| GENE 12 8765 - 9073 114 102 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1019 NR:ns ## KEGG: LDBND_1019 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 102 7 108 108 176 95.0 2e-43 MTEPVLADIPHIESWLLETDGEDIVGKSRQKRLEEVEVGQLLSLQLNPPYEQITVCTLEG DELGKLNHPRQGQNLVYRPEKPRKLKTRQPLKQATAPVAFFV >gi|300496132|gb|AEAT01000118.1| GENE 13 9235 - 9987 328 250 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 225 1 219 245 130 34 2e-29 MEKVMTVNNVTKTYGKKGEKQFQALRGVSLSVAKGEFVAIMGTSGSGKTTLLNIMSTLDK PSSGEVTINGKNIAKLKKNQMADFRAKEIGFIFQDFNLLDNLTARENIALPLSLQGVKSS EIDSKVDKIAAKLNISEVLEKYPAAISGGQKQRVAAARALVHEPAILMADEPTGALDSKS SRALLDTMELLNEKDQVSILMVTHDPFSASFADRILFIRDGLIDEDIKRGDLKRQDFYKK LISQLSENTD >gi|300496132|gb|AEAT01000118.1| GENE 14 10010 - 11887 2526 625 aa, chain + ## HITS:1 COG:CAC0227 KEGG:ns NR:ns ## COG: CAC0227 COG0577 # Protein_GI_number: 15893519 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Clostridium acetobutylicum # 4 613 5 628 634 155 23.0 3e-37 MIFKLSMTGLKSRLKDYLVLFSGLSAASMIFYMFLTLAANPSFLKSSVAGRLTMGATKFV FSFGIVLLAILTLVYLAYANSFLLSMRKRDYGMYMMLGAKSGKIGQLIFAETLVTGLLAT GIGIILGVGLTELVSSLMVKQLGLTLAHFNPLYLPAVLWTLLFFVALFFLAASWNAVKLT KTTLINLLKEDQKPSKLKSRPVLRTIQAIAGVLLLATGYWAIWHVATLQLKAIPIALVTI VLGSFLIFDAFFVAVIDFLRKRHSFLYKGMRPYTLGQLKFRLHGYTRILSAISIMLALAL GAITVGINFNNLKNAMTDVMYYDIVLVGKQKKLADKVKKIGTEEKVTYSYKADEKNGILY VKKSEIDQTPLKIQMYNAASSDKKKAIDKEGRIYHTVEVTSKTLTGKQTSATVRNSAQAA SLFPEDSSKGFVALSDAAFAKKKLTTKVITFYKVKDFAKNNKKLLKLTEQEMKLFSKGSM AYGYLEFTKPFLYQQIAAMCSGFEFMGLFLGLSFLMMLASTLMFKILSAAASDKLRYKML YKLGARNSVLKAAIRKEIAILFVAPAVLGSLDVLFGLKIFTILLPDPYYKIWIPFLAFFL LYLVYYLVTIKLYQGIVLEETKQED >gi|300496132|gb|AEAT01000118.1| GENE 15 11951 - 12127 252 58 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1022 NR:ns ## KEGG: LDBND_1022 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 58 1 58 58 100 98.0 3e-20 MRKAVPMLDNNDQHPEMLEINKTDSERRELLRPFEITPTDGFVYDLRQTPIFPKAFTF >gi|300496132|gb|AEAT01000118.1| GENE 16 12370 - 13218 246 282 aa, chain - ## HITS:1 COG:BS_ywfK KEGG:ns NR:ns ## COG: BS_ywfK COG0583 # Protein_GI_number: 16080817 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 181 1 186 299 81 29.0 2e-15 MYNSELDTFLAVAEAGSFSKAAKKLYISTPAVVQQMNLLEKRLNVQLFVRNTHGVTLTPA GIEFIQWSRQIIFDCQQAEKELGKYQQKIVFASGYLNGQTLSSRLIPQFQKNHPKAQISF REINDYQQIPAEVDILEMTYAKEPLSEHEFSFISIVPSPLRVALPASHPLAKKKQLSLQD LAAQDLEIVAPSIAGSEDAMLSKLLNVRPAVKLHYYSVFNKAVVNQAQLTKHLLLIPEAY SELCHPYIVKPVSWSFATSYGFYCRKPVPKLVQEFIDLAQKS >gi|300496132|gb|AEAT01000118.1| GENE 17 13349 - 14818 680 489 aa, chain + ## HITS:1 COG:L137630 KEGG:ns NR:ns ## COG: L137630 COG1053 # Protein_GI_number: 15673106 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Lactococcus lactis # 3 486 59 498 502 132 26.0 1e-30 MNFDIVVVGAGASGISAALTASECGAKVALLEKGDKFGGAGMFGAQGLFAVESRAQKEAG VKYSIKDAYEEIINYTHHSSNALMVKAILEESAATIDWMAESGLETELVTNTQEVHQEHP RTYHQFIDKFNGFKRVMNKFLESGGVLMTETSAEEIVQEQGKVTAVKANRKGEEITLETK AVILADGGFVGNKDEIKRTLAIDPDDLYSMGERKATGDGLQMLKEAGGVSDYKRIFENHA ATVYSKTDPKWHNASLFDLTNIPLLWVNREGKRFTNEDVVYDFALWGDSVYQIGGYYYFL FDQATVDYLRQQALDWTSSFERTFRLLDKKPMTYQVGPYPQLDQDLNEGISQGAVFKADS IQKLAEKIAVDPANLTATVNRYNELVVEGKDMDLYKDDRFMTLLVKEGPFYAVRANSTTL GTVGGALVNEHFEALNVKRQVIDGIYAVGNDASGLYDSSYPTIEGLSNAFAWNSGRIAGR YASAYAAMN >gi|300496132|gb|AEAT01000118.1| GENE 18 14880 - 15803 215 307 aa, chain - ## HITS:1 COG:L197116 KEGG:ns NR:ns ## COG: L197116 COG3600 # Protein_GI_number: 15673914 # Func_class: S Function unknown # Function: Uncharacterized phage-associated protein # Organism: Lactococcus lactis # 5 306 6 303 306 175 34.0 8e-44 MSYVKDFTTVYTIGNRNYEITAPARFDDETNQPIYDAELDERASEMARQAYRDDMGLLSP TELKKHRAKVGLSQRNLAELTGLSPNTIALYEAGAFPTPANNKMLKYLINDDELLRQYIM DDTNNYSNDLVAKVKAYLQQKDIVVIDQSFQPKFTAVQLANWLRVENYFGRELDENVEPL TQMKLIKLLYFAYGRYLVKTHNKLFTSSIVHLQYGPVITEVHSKFKGLTVLDTGKPSKEA FDDYNLVSKDSDISHLLRLVNEDYINYSASGLSQKTHQPGSPWSLTDDGRIIKDQLIFDT FSNGLEE >gi|300496132|gb|AEAT01000118.1| GENE 19 16381 - 16563 133 60 aa, chain + ## HITS:1 COG:no KEGG:Ldb1099 NR:ns ## KEGG: Ldb1099 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 44 1 44 68 84 93.0 2e-15 MEGRDFEIYFSEYEDHVKEIVKNYPEKTRFYSVGGDGFFNQVIHRQMSPEAILKVTLDSY >gi|300496132|gb|AEAT01000118.1| GENE 20 17292 - 17849 960 185 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116514090|ref|YP_812996.1| acetyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] # 1 185 1 185 185 374 97 1e-102 MFSYKINDELELAVPRLTDGEALYDLIDRNRDNLSYYLPWVDHVHDVQAETDAIRRGLVR FAEGKALDLHIWYHGRLAGKVSLNSIDAMYSEADIGYFLGKEFRGRGIMTLATRAIIDIA FEEYGLHRIMLQCAVDNLPSNNVAKRLGMRFEGCHKGRLILRDGYHDSNEYAVLAEEWPN VQEKY >gi|300496132|gb|AEAT01000118.1| GENE 21 18075 - 18488 534 137 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1025 NR:ns ## KEGG: LDBND_1025 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 137 42 178 178 246 97.0 2e-64 MVNTYVYDEKGKRTKDKKILAGKAVGCYSMINYVGDKPYIMIGQNKYVAYMNVVGLDCRL NHNSYIYSSSGKRMKNSGVLLKNGPVTVYGGKKKINGSKYWAIGVGLYVKASNVETPKGE VTSDPNTQNQTTEPQTS >gi|300496132|gb|AEAT01000118.1| GENE 22 18643 - 19230 850 195 aa, chain - ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 4 193 3 193 194 246 64.0 1e-65 MSEYPQLNLDQAKGPKATIKTNHGDIVIQLFPEEAPMTVENFVRLAQKGYYDGVTFHRVI SDFMIQGGDPEGTGAGGQSIWGHNFEDEFSNELFNLRGALSMANAGPNTNGSQFFIVQNK NMPKRFIQQLRDAQYPEEVVKAYKQGGTPWLDHRHTVFGHVTEGMDVVDEIAKVAKDGND KPLEDVVITTVEIAD >gi|300496132|gb|AEAT01000118.1| GENE 23 19347 - 20528 1074 393 aa, chain - ## HITS:1 COG:SP0035 KEGG:ns NR:ns ## COG: SP0035 COG0436 # Protein_GI_number: 15899981 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 13 392 8 388 389 394 51.0 1e-109 MPETDPNLRDLGNRNLAKIAPSAIRAFDEEISQIPGIIKLTLGEPDFAVPDHVKRAAIRG IEADDSHYGPSKGKLALREAISKYLAASRQVDYDPETEVIVTDGATEAITATLLGLLNPG DKVLVPTPVFSLYFTNIEMAGGEVVMIDTSDTGFNLTPERLEAEIEAAGDQVKAIMLNYP CNPTGRTYSKAELTALAEVIKKHHLLAICDEIYSELTYDQEHFSLATLLPGQVILISGLS KSHAMTGYRLGYIAAPASLLPNVAKAHSFMVTCVDNIAQDAAIEALTKGLDDPKEFKAAY QRRRDFMVDNLTKLGFEMAVPQGAFYIFAKIPEKFGSDDFAFAKDVAKKARVGLIPGSVF GKGSAGYVRFSYAAADDKLAEVVKRLGEYVAQL >gi|300496132|gb|AEAT01000118.1| GENE 24 20565 - 21344 1127 259 aa, chain - ## HITS:1 COG:L0094 KEGG:ns NR:ns ## COG: L0094 COG0289 # Protein_GI_number: 15673543 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Lactococcus lactis # 3 259 7 258 260 264 49.0 1e-70 MPRILLAGFAGSMGQQVVKLVASLPDFEITAGLAHRLKSSDPADYGLPASTKLYTSLDEI PADAADIWVDFTVPASVYQNVRYALENGYRPIVGTTGLTDQQEAELKQLAKEKGIGGLIA PNFGMSAVLLMKFAREAAKYFPDVEIIEMHHEDKKDAPSGTALATAKLIAEVREPHQTAA DTTESLPGARGGDYQGIKLHAVRLPGYVAHEQVLFGGRGEALTIRQDSFDRSSFMSGVKV ALEKAADLNQLYVGLENIL >gi|300496132|gb|AEAT01000118.1| GENE 25 21346 - 22275 1141 309 aa, chain - ## HITS:1 COG:SP1014 KEGG:ns NR:ns ## COG: SP1014 COG0329 # Protein_GI_number: 15900886 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Streptococcus pneumoniae TIGR4 # 3 286 4 287 311 268 45.0 1e-71 MNQNLQNADLLTAIITPFTEDGQIDFASLTELTNNLIDQGCNGFVIGGTTGETPTLTHDE KIALYTCFGQIVNGRVPVIAGTGSNNTAETIAFTEEVAQIPGIDYALVVVPPYNKPNQRS MIAHFTAVADQVHIPVVIYNIPGRTGVKMEVSTILQLAQHPNIAGIKQCASLEEIEEIVS GRPVDFAVFTGEDAQALMARILGADGVISVASHLYTPRMREMYDELYAGNFALAGSLQRW LTPRMKALFMFPSPSPVKAALAAMGYQVGGLRLPLVALNDEEKEELATALKLPKDALAGQ LTRDILEGD >gi|300496132|gb|AEAT01000118.1| GENE 26 22298 - 23452 1221 384 aa, chain - ## HITS:1 COG:SP2096 KEGG:ns NR:ns ## COG: SP2096 COG1473 # Protein_GI_number: 15901911 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Streptococcus pneumoniae TIGR4 # 8 383 3 376 376 410 51.0 1e-114 MAVLTEAELLQIRRQLHQIPELALKEYQTHAYLLDVIKQMTQDYLEIREPAELPTALLVL VKGSKAKRTIGYRADIDALPVTEATGLPYASKHQGVMHACGHDIHMTVALGVLSYFSEHQ PTDNLLFFFQPAEESESGGMKAYQLGLFTGKWHVDEFYGLHDNPSLPAGAIGCRNGTLFA GTTEVNIDIQGKGGHAAFPQLSNDAVVAAAALIMQVQTIISRNIDPVQSGVITLGKLTAG KIRNVIADSARIEGTIRGLTQSMIELIDKRLAEVCQGIELSFGVKVKLELNQGGYWPVEN NPELTENFIKYMKQADGVEYVETAPAMTGEDFGYLLAQIPGTMFWLGIEDDSPLHSATLT PQESSISRGIAAITGFLEYRMIED >gi|300496132|gb|AEAT01000118.1| GENE 27 23513 - 24226 920 237 aa, chain - ## HITS:1 COG:BS_ykuQ KEGG:ns NR:ns ## COG: BS_ykuQ COG2171 # Protein_GI_number: 16078482 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Bacillus subtilis # 1 237 1 236 236 264 62.0 9e-71 MAELDAQSIINYIGSAPKKTPVKVYLRGAGLDQVTFPEGTDPFVSGQAGVVFGDWQDLKP FLAEHEADFESVRVENTARNSAVPLLDLKEINARIEPGAIIRDQVLIGDNAVIMMGAVIN IGAEIGAGSMIDMGAILGGRAIVGKNCHIGAGTVLAGVVEPASALPVRIDDDVLIGANAV VLEGVHVGQGAVVAAGAVVTKDVAPHTVVAGVPAKVIKEVDAKTESKTGLEEDLRKL >gi|300496132|gb|AEAT01000118.1| GENE 28 24739 - 26103 1876 454 aa, chain + ## HITS:1 COG:BH1500 KEGG:ns NR:ns ## COG: BH1500 COG0527 # Protein_GI_number: 15614063 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Bacillus halodurans # 1 450 1 448 456 393 47.0 1e-109 MKVVKFGGSSLASGPAVENALKIITAEAERQVVVTSAPGKRFDDDIKVTDLLIKYAHEIN HGRNGLEVADRIFQRYVEIGEYFNLPLEEILPLKEILLNLPKEHYPNKNYLQAAFKAHGE RLNAKLIAKILQSQGVKARYVDPKDAGIIVTGSPNNASVNPESYQLLENFAYDADEKLIF PGFYGYTLAGHIATFSRGGSDITGAILARGFHADLYENFTDVDAIFSANPKVVDQPQPIH TMTYREMRELSYAGFSVFHDEALIPAIQGQIPINVKNTQHPEKRGTMIVPEKGFKPETVI TGIASGKHFGALYLHKYLLNKEVGFTLRILQILNKYRLSYEHMPTGIDDLTLIFDRDTLN DELIDQICNEIQNEVSPDHLEWISDYAIIMLVGEGMRDRIGVIRDIATPVAREGISLRMV NQGASEISIMLGTAAKDADRAVAAIYDYFFKQEA >gi|300496132|gb|AEAT01000118.1| GENE 29 26114 - 27100 1117 328 aa, chain + ## HITS:1 COG:lin2126 KEGG:ns NR:ns ## COG: lin2126 COG0253 # Protein_GI_number: 16801192 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Listeria innocua # 6 328 8 323 329 256 46.0 4e-68 MNKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEEASH PGVLGKMRVINADGSEASMCGNGLRTVARYLHEKTGESQFKVETMYADLAVRQADDFAEG VPAFGVEISPVRFNKESLPFDNLGHNRLLDTLVPELVPGWRFSALAVPNPHLIAFIKEED LESPVLGELGAYLNGENPYFSDGVNINYTVIRGDSQLFVRTYERGVGFTNACGTGMSASS LAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGYWIELIGNATETHTIEIPEDQLHS GQVKLEAVKTKETGEQAAYLTFVDQLTE >gi|300496132|gb|AEAT01000118.1| GENE 30 27147 - 28415 1229 422 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1035 NR:ns ## KEGG: LDBND_1035 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 422 1 422 422 736 98.0 0 MKEESKVLTEKETDQLVSDFFENYESYFDRPYYMDVLAQPLAKQYLRPSSLKVCLAYQLL TKEWLKAKLEEESFHDNGEKERIYLEPGKLKNNLPKEDWDLASDYLFPGDKQAYLELTAD KKKLLLPSNKRQQLQHFKTSLANCQSWQKLLYHIKENHADLSVNWHFKNQSKLEVTLTGR KDHEHAFALKEPEAMDEEYDKFLANSKKKEANYKKKIKEKVAASSLRGDLLARAIAQLAL RNETRITPNNCLKILRGLSYPDYDAINHSDYDRHFRFLPNQEILQVIEAMQKDGLIAAEE RFYSDYHVYYHELVPTDLTEEFLNAEAAEGSDLALLKELNESVDKTDLSAFNVVKLSQEL LQHPALVCVDQSYQAFIDQHDLAREYLKTRLQLTTNKFTKKYLRLLLEGDAEKSIPGQAV NA >gi|300496132|gb|AEAT01000118.1| GENE 31 28475 - 28651 136 58 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1036 NR:ns ## KEGG: LDBND_1036 # Name: not_defined # Def: vwa domain containing coxe-like protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 58 42 99 116 115 96.0 7e-25 MLWMGDARNNYLPSEEKIFKDLCRRVKKCYWLNPEAKSKWNTGDSVISRYTPYVSELA >gi|300496132|gb|AEAT01000118.1| GENE 32 29205 - 30536 388 443 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 417 1 422 458 154 28 2e-36 MKKYDYIIIGSGPAANHLLFKLARTDRTALVIENNLWGGTCPNTGCQPKIFLEGAVRPVL NTYYLTGKGVKAAAQLDWKTLIKRKKEIWAEFRAEERSSIESDQVDTVFGSGVITGPHTV AAAGEEYEGINIIMATGLLPHHLEVPGSEYAISNDEFFDLDELPKKAVVIGGGYVALELA TILQAAGSEVTVLQHSEKLLRPFDQEYVEKLTEIMEERGIVIHLNTPVKAIAKNSAAYEV TAENGQKFETDLVIDASGRRANVNSLGLEKLGIKFDPVKGVAVNEHLQTNVPSIFAAGDV ADNGQMNLTPVAWVDSYHIYDFVENGLTEGIKYPAVATSTFTYPQVAQVGKRESEMAEGD TVRRMKLGSTFAALGEGDEEAELKVIFNKDGEVVGASEISINAGEDINLFAPLIGRKDPA EFAMNNLGFAFPTLANKLDVLFR >gi|300496132|gb|AEAT01000118.1| GENE 33 30663 - 31097 477 144 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1039 NR:ns ## KEGG: LDBND_1039 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 144 1 144 144 233 100.0 1e-60 MSAKKNILVSSLIGIGIAAVSSCLVSLLLLAKGAGSLTMTVAEYTQMLAGIILVGLGFGL PSIVYQNDKLAPAYQVLIHMGTGCLVMTLVSFWTGWIPVKAGFWPAFLTIAGEIAVAFIV WLIFYQQEKKLARKMNNRIKQLKK >gi|300496132|gb|AEAT01000118.1| GENE 34 31110 - 31550 568 146 aa, chain - ## HITS:1 COG:SA2153 KEGG:ns NR:ns ## COG: SA2153 COG3279 # Protein_GI_number: 15927943 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Staphylococcus aureus N315 # 1 146 2 147 147 60 28.0 1e-09 MKVKVELNKDQDLPLAVIYTDKMTEEVERAVAFLESGASSGPLIAQQEDRLVIIKPSDVI LVRVEGGDTVIYTGIGKYFSRKRLYEVYQQLGQDFMQISKQAVVNLTCLESVEASFNGTM FLRLEHGLSDYISRKYLPAFKQYLGL >gi|300496132|gb|AEAT01000118.1| GENE 35 31865 - 32224 410 119 aa, chain - ## HITS:1 COG:SP0802_1 KEGG:ns NR:ns ## COG: SP0802_1 COG0847 # Protein_GI_number: 15900695 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Streptococcus pneumoniae TIGR4 # 8 116 8 122 186 70 36.0 1e-12 MDPKLHDYTVFDLEITGKKIIQIGALKVRDDQTVAKFSTYVNPSLEKINDYVSHLTGISN YQTDAVPLIDEVMPDFLDFVGDDTLVGHNILSFDCNVLADNGYPVANPKLDTLLLANSS >gi|300496132|gb|AEAT01000118.1| GENE 36 32229 - 32897 252 222 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|241889384|ref|ZP_04776685.1| 30S ribosomal protein S8 [Gemella haemolysans ATCC 10379] # 1 214 4 211 216 101 30 1e-20 MDVEEEIFAKRQCRFNKLAAYGFKKNGDDYYLEVPLKSANFLAKIRISSAGKVSGNVYDL DTGEEYLLLRVESNTGSFSAVVKAEYRTILQDIAGKCFVKAQADRIKDEIKARYGDEPDF PFKKFPDYAVFRNPQNRKWYGLLMAVPLGKLTGDEKDQQEAAVLNLKLAEEKLPALLKKA DFFPAYHMNKQNWLSVLLNNDLPDEEVLAMLDESRAFTERKK >gi|300496132|gb|AEAT01000118.1| GENE 37 32911 - 33684 726 257 aa, chain - ## HITS:1 COG:ECs2020 KEGG:ns NR:ns ## COG: ECs2020 COG1434 # Protein_GI_number: 15831274 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 2 240 14 250 266 119 32.0 5e-27 MINDINTLADYLGPRDLPALTPAALVEKYGIPQADAFVLFGGSILPGGDVFAAAKKAEIA KKYIIVGGHGHTTDGLRAQAKAAFPDLEVDSLSETEIFAAYVQRKYQITADLLECRSTNS GNNITYLLDLLNRHNIDLSSVILCQDATMQLRLSAVLRKYRPELTIINYAAYQAHVLEKD GQLAYDKKIPGMWPMDRYISLLMGEIPRLRDNKDGYGPLGKDYIAHVDLPASVEGAFSRL LKEYGGSVRQANPAYKS >gi|300496132|gb|AEAT01000118.1| GENE 38 33677 - 34249 328 190 aa, chain - ## HITS:1 COG:L19745 KEGG:ns NR:ns ## COG: L19745 COG1247 # Protein_GI_number: 15673759 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase and related acyltransferases # Organism: Lactococcus lactis # 4 171 1 161 187 160 49.0 1e-39 MTELELRRANVGDAERLLEIYAPYVEKTAITFEDEVPPIGEFQNRILKTLRIYPYLVALK DGKIVGYAYASAFKERAAYDHSVELSIYVDANVRHQHVGRSLYDAIEDCLKKQGFLNLNA CIAAPIGEDPYLDDNSIRFHEHLGYNFVGRFHQCGYKFGRWYDMVWMEKMLGEHTVPAPA IIPFPEMKND >gi|300496132|gb|AEAT01000118.1| GENE 39 34379 - 35029 239 216 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1048 NR:ns ## KEGG: LDBND_1048 # Name: not_defined # Def: methylase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 216 29 244 244 412 98.0 1e-114 MLDQPEISAKVNDLTATFLEPSAGEGAFLTEILTRKMQVALEGSTSVDNYEDRILLGLAS LYGIELMEDNYRMLRHNLYQTFAVNYLRGLKAKGQPEHGKPKVLKSAKTIIFANMVQGNT LTYKNVHDQPILFSEWASYKQEGRIWVKRTTQTFESIVEGEQTDNGLVVPEDSQLDLFTD FDPDTHEVKSKDSYLQYKPVQIVDVYKEELVDTNKE >gi|300496132|gb|AEAT01000118.1| GENE 40 35113 - 39546 2782 1477 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1049 NR:ns ## KEGG: LDBND_1049 # Name: not_defined # Def: DNA or RNA helicase of superfamily II # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 1477 1 1478 1478 2552 89.0 0 MKSNFEFLKNEDDLQKYYANAVNAERLYADGYYSEEVINVRKIAEELTKDIMDLEYLQVD ERATFNDNLTRLRKGAYVTDRAISVFYEVKRSGNVQAHALEETATKESGLKELKNICYLL ADFAHKYYDIHVNTSSDAFIEPERETNYSSSERRLVYIQTADNSSGNWPAYIGARKVGKA SIEEDFNNDLRPNSDYLRIRADKRVKQYMGTGGVPYVIEWAELGYSPVTNRWFGDEAVHD VLKRSGIKHAEGLEGNEWYKVDLETAKKAIQAVKDGKSAIELDNQAPKQQKPIEVKITLR PEQRDAIDKTKAAYKHYNRMLWNAKMRFGKTITALSLVKESKYKKVLIMTHRPVVNEGWF EDFNKIGMTKAGYLYGSRNRGHRSVEELENLGQPYVYFASIQDLRGSTEIGGKVSDKNHD VFSVAWDLVIVDEAHEGTQTDLAQNVLDAVLRNKRTTKLLELSGTPFNLLSDYDEEQIFT WDYTMEQEAKLAWSEEHPNEVNPYESLPKVSMYTFEMSDHFKDINFTGDGLGRYSFNFKE FFRTDENGKFVHEKNVRQFLKNITSPGPTNYPFANRTFRNNLRHTLWILPGIKECNALED LLNEPGTVFHEEGYKVVNVVRGDKTADEEASQSDVERVNRAMDPDPATTKTITLTVRKMT TGVTIKPWTGVLFLSNTNSAMQYLQAAFRAQTPYASVTFGQKTNCYIFDFAPDRALTVMA EASSLSTGAGKLNSGEQEERMTKLLNFLPIIGEKGNKMHVYNVNTLLTKLKKAYAEKAVR SGFDDNSIYSDKLLNIENKEILAKFNKLKAIVGTTKKEKQETKIDINKQGLTEKEAETAR KARKKKPKERTKEEQEAIDKVNALKRQRRTLISILRGISIRIPMMIYGMDIDFDEDVSIQ QFMNRVDDVSWQEFMPAGVTKEMFKQFIPYYDSEIFIEAGKIIRRHVKELDKADPLDRVE KIADIFGTFRNPDKETVLTPWRVVNMHLGKTIGGLVYYDDNYETQYVDGKSAMHWVSSEN TERVYHENTRILEINAKTGLYPLFVAASLYWKEFQKMNDQTAGKFGLLDEQLIWQKILRE NIFVVAKTPMAKEIAVRTLRGYNSDWDVNAEYVENIIKDAKTDVDAEAKKIERLFGNMKF DVVIGNPPYQQDSQGTSSRQEAIYNDFINLAYKLSPLVTLITPGRFLFNAGSTPKKWNKD MVTDQHIKVVMYEQDSAKIFPHTDIKGGVAITLRDQSNKLGPIGTFTIFPELNSILKKVE PNLKHGSLTDIIFVQNKFNLDVLNSKVPSANRTDKRLESNVFIKFNIFHDERESKDDLKI LGLVNGKRVYRYVNKEFIDLNHPNLTKYKVLLPKSNGSGAIGEVISTPLIGEPLIGEPLI GYTRTFIGVGSFDSLTEAEAALKYIKCKFTRAMLGVLKITQDNNPDKWAKVPLQDFTSNS DIDWTKSILEIDQQLYKKYNLSEEEINFIETKVQAMD >gi|300496132|gb|AEAT01000118.1| GENE 41 39665 - 40132 366 155 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1050 NR:ns ## KEGG: LDBND_1050 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 155 1 155 155 305 94.0 4e-82 MQFMLSNLDRPVDLDLVKEYNRIVCESLCDKPGMPAIGKIEEVLRLAKDIEHPIKQGFYL FGHITREQWFNDGNKRTAQLVANHAFVQNNAAMLAVPVEERENFWHKLVEFYETGQQDDL NDFLYKTSIGIMPGGLTMEKTREIEERNRKWLGLE >gi|300496132|gb|AEAT01000118.1| GENE 42 40402 - 40593 128 63 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1052 NR:ns ## KEGG: LDBND_1052 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 63 1 63 63 80 98.0 2e-14 MLSEKIIDLLVCFVAFVVFAIVVSIYPKEMFALLIATVLLIGIYAVVKELVKDWLKHNHR FGV >gi|300496132|gb|AEAT01000118.1| GENE 43 40643 - 41488 782 281 aa, chain - ## HITS:1 COG:CAC1419 KEGG:ns NR:ns ## COG: CAC1419 COG1619 # Protein_GI_number: 15894698 # Func_class: V Defense mechanisms # Function: Uncharacterized proteins, homologs of microcin C7 resistance protein MccF # Organism: Clostridium acetobutylicum # 2 273 11 284 288 167 35.0 3e-41 MKAALVGCSNPLKAAYRPVVDQLVKILEDRGLEVVVSQFLTDDTLIGRGEKRARELESFF LDPEMGHVFDISGGDLANTVLGHLDLDQIKDSQAVFYGYSDLTTILTALAKNGNQAVNFQ LRNCLVNKDLLKSGYFDRLLAGKEAAKELDELEVTFVRGSKMAGPVYGGNLRCLLKLAGT PYWPDFTGSILLLEAYRGQPELVASLLEQCWETGIFNQISGVLLGTFSELDKLKESQLPA EILLDLLPANVPIAKTEFIGHRPDAKAIRLGQECVFKEVGV >gi|300496132|gb|AEAT01000118.1| GENE 44 41533 - 42957 1434 474 aa, chain - ## HITS:1 COG:SP1402_1 KEGG:ns NR:ns ## COG: SP1402_1 COG0144 # Protein_GI_number: 15901256 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pneumoniae TIGR4 # 2 291 1 280 280 271 52.0 1e-72 MIEIPNQFKEKFTGLLGQEEAGKLLDSLAEPSKKAYRINSLKKGAVAYPQEEAVPGIPNA YYGEVSGKDPEWTAGLVYSQDPAAMFPAQAIPVKPGDKVLDLCAAPGGKSTALAQKLQGE GLLVANEISPSRAKILRENLERWGVANAVVTNCDSFALSARFPGFFDAILVDAPCSGEGM FRKSEDAIKYWSQENVDLCADRQREILTEAVKMLKPGGYLLYSTCTFSPEEDEEIVSWLL DEYGFKLLPIAAEKAAPGRPEWGNGDASLANCARFWPQDGVGEGQFVASLQKAASEESFA AGAGEVFSPVRKNEDKKKKGKGKNKGNRSSLERPSKEEFGYISEAIAGFNWPENLVSWPS QMLKSQDHVFVPALEPEQLKGIKVLNNGLELGILKKKRFEPSHQLAEVLGQVDQERVVDL TEDEYDHYLHGESLQVDSSLKGFVLVSCRGMIFSFGKLSGKGQLKNYYPKGLRQ >gi|300496132|gb|AEAT01000118.1| GENE 45 42950 - 43924 1181 324 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1055 NR:ns ## KEGG: LDBND_1055 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 324 1 324 324 557 99.0 1e-157 MKRYKLFVILSTFFLFIMIGIVYSNMQSQLADQILQAQGMSMEARIVKPKKTMTIASFLK WIKKEFPKESIQMQFKSKEDKNQVLIWSQNRDLNYFPVSSGRFFSEDDFKGQVTIAAVSP SSAASQIKTQGNTYLIANGQYYSVVGSLKAVPYQSSKAYYLTTGVKQETGQSRINHFTLY VDASSQTIGKIASHLKSETYWPDFVKRGRQRRLTLLMPEALLILFLLGVGVLLMGLIAWL TWKETDLSHVKGDLLPNLLLNRSGRFIVFMVLEAFASYFLLVWKAYYSNQSILGLLLLGT VVVELAVYVGMMVYMYRKGKQADD >gi|300496132|gb|AEAT01000118.1| GENE 46 43924 - 44664 970 246 aa, chain - ## HITS:1 COG:no KEGG:Ldb1173 NR:ns ## KEGG: Ldb1173 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 246 1 246 246 457 98.0 1e-127 MTQFIEKISALAKEFADPELDRQVQEIKMIDECVSSQRMLLFAPDRLGISDDRFAELTWE LLDSQIKDMRALNNLLNNVRQYLSLEYGIWSLPNMETAQLFKNELGIETALEVMAGNAYW SKALSEAGIQVWATDSLEWSKSSKTGKKPFYPVENLPADQAVMKYATCDMILCSWAPNFG QADLELIAAKQHYAPAARLFFIGEKGVTNSPEFWTRKYFDKSSELRKINRSFKSYDFIKE KFIEVS >gi|300496132|gb|AEAT01000118.1| GENE 47 44775 - 44972 281 65 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1057 NR:ns ## KEGG: LDBND_1057 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 65 1 65 65 86 100.0 4e-16 MRSTEETMLMDTMIANGVSNKMTEQATGLAAPKPVQKKNAAKLETRDMLLANGVDEEMAD LAADL >gi|300496132|gb|AEAT01000118.1| GENE 48 45120 - 45731 581 203 aa, chain - ## HITS:1 COG:SP0860 KEGG:ns NR:ns ## COG: SP0860 COG2039 # Protein_GI_number: 15900744 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Streptococcus pneumoniae TIGR4 # 3 197 2 197 214 208 55.0 5e-54 MTKILVTGFNPFNHEKINPAIEAVKLLPDEISGCEIIKLQLPTSYQKSEKKLQAAVEREE PDFVLNVGQAGGRACLTPELVAINYDDCPVADNDGEKREGQAIDPEGPAAYFTQLPVKEM VKAIKAAGIPAEVSTTAGCFVCNHVMYYAQSLRKEHPGMQAGFIHIPFLPEQVVKRPNQP SMALETIVTGLTAAIAAFFPDGD >gi|300496132|gb|AEAT01000118.1| GENE 49 45810 - 46562 1000 250 aa, chain + ## HITS:1 COG:BS_ypdC KEGG:ns NR:ns ## COG: BS_ypdC COG2339 # Protein_GI_number: 16079351 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 16 230 4 204 218 77 31.0 2e-14 MFFFFLEPVLIYNWLLILAAVIPAIFLMIKVYQSDRLEPESPYLLWKMVTGGIWSAVVAG ILEWIANGVLTSYVSQKDPIYNVIMYFVIVAYAEEGAKYFFLKRRSWFSREFNCQYDGVV YAVFVALGFALWENISYVMIYGFSTALVRAVTAVPGHACFGVFMGIFYGLARGYAYLGKN IRSKFFRILAIVVPAALHGSYDYVASLNSAEGQWIFLAFIAVLFFISFHLVNRMSKNDKY FQIDRRNYRF >gi|300496132|gb|AEAT01000118.1| GENE 50 46635 - 47546 1416 303 aa, chain - ## HITS:1 COG:SP1576 KEGG:ns NR:ns ## COG: SP1576 COG1897 # Protein_GI_number: 15901418 # Func_class: E Amino acid transport and metabolism # Function: Homoserine trans-succinylase # Organism: Streptococcus pneumoniae TIGR4 # 1 303 1 305 314 402 62.0 1e-112 MPITLDKQLAAIDVLRQENIFVMDSQRARTQNIRPLKILVVNLMPKKANTEVQLLRHLAN TPLQLEVEFLYMASHKSKNTSNEYLENYYRTFADIKDKRYDGMIITGAPVEQLPFQEVDY WSELCQLMEWSKTHVYSSLHLCWGAQAGLYYHFGIDKQPLEKKLSGIYEQEVVGTSPLLR GFDDSYRCPHSRYTTIYPDQLKKCSLQILAEGPEVGVAIAASDDLRQIYSFGHLEYSRDT LSEEYHRDLNAGINPLLPINYFPDDDPEKKPRLTWSLAASTFFSNWINYAVYQETPYDLA ELD >gi|300496132|gb|AEAT01000118.1| GENE 51 47705 - 49153 2014 482 aa, chain - ## HITS:1 COG:SPy1371 KEGG:ns NR:ns ## COG: SPy1371 COG1012 # Protein_GI_number: 15675303 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 7 481 1 475 475 683 74.0 0 MKGVALLTEHYLNYVNGEWRDSADAIEIFEPATGKSLGTVPAMSHEDVDYVMDSAKKALP AWRALSYVERAAYLQKAADILYRDAEKIGSTLSKEIAKGLKSSIGEVTRTAEIVEYTAKV GVTLDGEVMEGGNFDAASKNKLAVVRREPVGLVLAISPFNYPVNLAGSKIAPALMGGNVV AFKPPTQGAISGLLLAKAFAEAGLPAGVFNTITGRGRVIGDYIVEHPAVNFINFTGSSAV GKNIGKLAGMRPIMLELGGKDAAIVLEDADLDLTAKNIVAGAFGYSGQRCTAVKRVLVMD SVADELVEKVTALAKDLTVGMPEEDADITPLIDTKSADYVQGLIEEAAEKGAKPLFDFKR EGNLIYPMVMDQVTTDMRLAWEEPFGPVLPFIRVKSADEAVKIANESEYGLQSSVFSRNF EKAFAIAGKLEVGTVHINNKTQRGPDNFPFLGVKSSGAGVQGVKYSIQAMTRVKSVVFNI EG >gi|300496132|gb|AEAT01000118.1| GENE 52 49236 - 50756 1678 506 aa, chain - ## HITS:1 COG:L65675_2 KEGG:ns NR:ns ## COG: L65675_2 COG1732 # Protein_GI_number: 15672830 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Lactococcus lactis # 214 506 5 296 296 291 52.0 2e-78 MSELINTISSHQGQIWQALGEHLLLSMEALLLSCLIAIPLGMLLAHSKRAGEVVFQITSI IQTIPSLALLGLLIPFVGIGTTPALIALTAYGIMPIYQNTYSALRNIDPNLEEAADAFGL SRWKKLSRLEFPIALPIILSGVSISLVMIIGTATLAAMIGAGGLGTYIMIGIQQNNNTYI LIGAGLSAVLTLAMSGLLKFMASSKKHFRVTAAVLAIFAIGLGVSQAPKHFTPKQEEVVI AGKLGSEPDILINMYKDLIERDNPHVKVTLKNNFGGTSFLFNALKTGKIDIYPEFTGTVL QGLAKKKVATPHDPAKTYQLAKKLMAEEDQLTYLPPMNYQNGYDLAVTKAFAKKHNIKSL SDLAKVDASLTAAFDPDFANQQDGYLGLKKEYGLNFKVKTMEPALRYKAIASGKVAVVDG YTTDPQIKQYDLVALKDDKSFFPPYQGAPLLKNSFAQKHPGVVKSLNKLAGKITEAEMQE MNYKVTVKHESASKVAHQYLKQHGLL >gi|300496132|gb|AEAT01000118.1| GENE 53 50760 - 51683 1106 307 aa, chain - ## HITS:1 COG:SP1861 KEGG:ns NR:ns ## COG: SP1861 COG1125 # Protein_GI_number: 15901689 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Streptococcus pneumoniae TIGR4 # 1 236 1 236 242 270 58.0 3e-72 MIEYRDVGMTYGDNVILKQINLTINDGELFVLVGPSGSGKTTLLRMINRLTEPTHGDVYL DGKRVKDHDLRQLRLHMGYVLQTSSLFPNLTVGDNITIQLEEAGVKKVERKKRALALLAQ VGLEGDKYISRLPKELSGGQQQRVAIARAMASQPKLILMDESFSALDPVLRRQQQELLLD LHRQSKTTVVFVTHDMQEALRLGDRIGVIQDGCLLQVGNPEEIVQKPANSFVADFFKSAR PRLGTMLELLASPYVNRITEENLPEVEKVEEVTGLAEKAGFLQFAYQGAGYQIKSSDLLH YFGKWGD >gi|300496132|gb|AEAT01000118.1| GENE 54 52015 - 52473 552 152 aa, chain + ## HITS:1 COG:lin0458 KEGG:ns NR:ns ## COG: lin0458 COG1959 # Protein_GI_number: 16799534 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Listeria innocua # 1 150 1 149 155 114 42.0 5e-26 MKVSTRFSDSIHLLTFLVIYKGKTTLSSNIIASSLNTSPVVVRRLMSNLRDAGFIKTTHG SPDPELLREPKDISLLEIYLATEGKSPLFAIDHETNPDCIVGGNIQPTLTDYFSHAEIAA EAVLGKISLQDVIDTILVKEAAKKQAENSKEE >gi|300496132|gb|AEAT01000118.1| GENE 55 52556 - 52975 552 139 aa, chain + ## HITS:1 COG:SA0381 KEGG:ns NR:ns ## COG: SA0381 COG0702 # Protein_GI_number: 15926098 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Staphylococcus aureus N315 # 3 136 149 280 281 100 42.0 8e-22 MVPYLPELIARGNVIYPVGDQAMSFISRKDSAEAIANVAVRPYLRDKEQIYLLTQEKNYN MVELSRIMTEVTGEKIGYQPVSLEEFANIYRAEGDGDELASMYKAAAMGLMDGVTDDFTR ITGHTPQNMNDFLAENYKK >gi|300496132|gb|AEAT01000118.1| GENE 56 53037 - 53948 933 303 aa, chain - ## HITS:1 COG:SPy0331 KEGG:ns NR:ns ## COG: SPy0331 COG0501 # Protein_GI_number: 15674492 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Streptococcus pyogenes M1 GAS # 1 297 1 297 298 196 40.0 6e-50 MLYQQIEQNKRNTWIVLGGFTALLLAIAGMLSVYLTFWAGMIFLAAGIIYMVYIYFYSTR HLMRITHAVEINQENVPQLYEMVEEMSLAAGIPMPKVYAIPSNIPNAFATGRDPEHASLA VTSGLVKIMNHDELLGVIGHEISHIRNYDLRVTTITSALSSFIYLAAVYLLALGWTLFKM DGGVITKCICWFFGSIALAVGAGLFIVALPIAKLLNLSMSRQREYLADIGSVDLTRNPKC IVGALKKLEAIEQQYQQQKENPMVSALAFNSFQVKHWWTNLISDHPTLDRRIDRLEHTAD LPK >gi|300496132|gb|AEAT01000118.1| GENE 57 54678 - 55385 726 235 aa, chain - ## HITS:1 COG:BH3313 KEGG:ns NR:ns ## COG: BH3313 COG1168 # Protein_GI_number: 15615875 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Bacillus halodurans # 1 223 167 389 397 166 35.0 4e-41 MMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDA KNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYE EGHNWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNTSYLAWVDISALGMNAEDFCKYL REKTSLIISARNGYRGNGYEFVRINLACPKELVIDGMQRLKQGVLNLNNQMAKCQ >gi|300496132|gb|AEAT01000118.1| GENE 58 55472 - 55870 476 132 aa, chain - ## HITS:1 COG:CAC2970 KEGG:ns NR:ns ## COG: CAC2970 COG1168 # Protein_GI_number: 15896223 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Clostridium acetobutylicum # 6 125 2 121 384 102 37.0 2e-22 MAEKQYDFTHVPKRQGNSIKWGGLKEKELPMWIAEMDFRIAPEIMTSMEEKLKVAAFGYE SVPAEYYKAVADWEGIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNM FYSVIEGAMAAG >gi|300496132|gb|AEAT01000118.1| GENE 59 56174 - 62056 6592 1960 aa, chain - ## HITS:1 COG:SPy2010 KEGG:ns NR:ns ## COG: SPy2010 COG1404 # Protein_GI_number: 15675796 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Streptococcus pyogenes M1 GAS # 207 1005 115 956 1181 245 29.0 5e-64 MQKKKSARHLNKVAELAAALLLSASPLAGTFQSAAFVQAASQETVSPRSASRAALTKYLQ QEQRYNAKESYSKFQEAAKEQRQASGQAVSKKNESSVRVIVSLNKSAAFDHTSKPTGSAA SVKKIEQASDQVKDGQEKVIKQVEEITGNKVRRQFGYLVNAFSIDMDLDDIDKVKDLPQV KNVTPVKVYHPTDESADQMAQVQDVWQEQKLKGEGMVISIIDTGIDSSHQDLKLDSGVST ALSKSEVESDKSKLGHGKYYTEKVPYGYNYADKNDQIVDNGSGEMHGQHVAGIAGANGQV KGVAPDAQLLAMKVFSNNAKNSGAYDDDIISAIEDSVKLGANVINMSLGSVSSDVDPSDP QQQAVAKASEAGVINVISAGNSGVAGSTGDGNPVNNTGTSELSTVGAPGVTPDALTVASA ENSKVTTDTVKDELGGVTFSANSELKGAAQVTTQLESNYSVLTKTLKLVDMGLGGADDYT AEKKAEVKGQLAVVERGSYTFSEKVANAKAAGAAGIVIYNSKDDGLLSMSLDDKTFPTLG MSKADGEVLAKAAKEGKSIKLKFGTALIDNSSAGKMSDFTSWGPTPDLDFKPEITAPGGK IYSLANDNKYQQMSGTSMASPFVAGSEALILQGIKKQGLNLSGEELVQFAKNSAMNTSHP FYDTEHTKEIISPRRQGSGEINVKDAINNTVEVKAANGNGAAALKEIGRQTTFKVTLTNH GKKAQTYAVDNYGGPYTQATEAKSGEIYDTKIVKGQLTTETPKVTVQPGESVDVSFTLTL PYSFQRQNFVEGYVGFEAEDQATPNLVLPYMGFFGSYSQASVSAPMLYEGGNSNLINTIH SLVGVMASNNNDILGHTGYEGDDYSKYTDPDLIAISPNGDGSRDYAYPVLFFDRNYKEYT ETITDAQGNKVKSLGVGKRGTKDYYNSSRGKWTTHSLDKWDGTDADGQVVKDGQYIYKVE FTPATGGSKQELNIPVKVDTQAPEVSDLQVTKDGKLRLKAKDSGSGLDMTMFVAAVNGEK QKLALAPVKGESDVYESTTALTGLKDGKNQVETVLADYAGNVGYAATFSSQNNDADNKLL LFNLADGQKITSQSPAYDQEKETYTVTGTYKKNAKLKFNDVEAESDEDGYFEVKLPVKDG QNQLLIKDGDQTLEAVNFTVKAEGPKVSVDEESSGRILAKDDSYTLSGTVSGLGESGKLE LTNLSDKSKTKLTVDQDGKFSQKVDLNYGDNPFELTATDADGNVTKKDVTIFTARSYTYN KDMLTFDNIASNLTVIGKTTPGYDEKDHSFTVTGKLAYPVARFQLNGDDVKYDPDTLKFS YTIKDLKNGNHSLTALVQDPRLNDGKPVVEWGYKLWVDLAAPSLQLEGMSLGEDGQLAVY TNKDVYDLKATINDNLSGYSLQVGSDTAYQDKTYEVFNEDFFKNRDAVKVSYPIKAEKDG SRKVKVTLTDESDNKTEQGFTLYNHQADLEAPEVSASESKKTNQAVQLKVENLSDVQKSA GKFKAADLYYSVDGKTWTKLDKDTVQVAENGKVEFKYQDVYGNESKVTTYEVKNIVKEVA AQPELKLTPDGEGKVKAELAFDKKDVDKDFNHIKYSLDGGKTWTDYKDAFTLTHNGTLEF KSYDDAGNESQVYTSVVKVERKLPAPDLIGTVEADKSVEVKAGNVEQAEKDADGKVTLLY STDGKDWSKVDGEVNLTDSDRAMFKYRDGDDNESAVVVYEVKKVVEEKTAESKPENKDDS KSDSKSDSKSDNKAETKSDVKTDSKTDTKSDSKSDNKSNTKSDVKSDGNGEAKSDNKSSA KDDKKTDSKTTSKSSAKKTNAKKNKKASKKASKKTVKKTKTYKKVKLTKLTKVYNKKGKV VGKLKKTSVKLLSKKQKLHGKYYYRVGKNRYILASSLPKKTKKVKQVRARKNAKVYNKKG KVVGHLKKKQKVKLLSKKQKLHGKYYYRIGKNRYVKANVL >gi|300496132|gb|AEAT01000118.1| GENE 60 62508 - 63011 574 167 aa, chain - ## HITS:1 COG:L126998 KEGG:ns NR:ns ## COG: L126998 COG0454 # Protein_GI_number: 15674038 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 2 164 4 163 164 120 41.0 2e-27 MLKFDQARAEDLDRIVEIERAGFNEAEAGSPAQYKERIQKFIGSFLVARNLEEEIVGFIT GPVVDSKYDYIEDWMYEKETESLAGPGSNQMVLTIAVHPDYRGQGIGSQLLDRFAETAKE MKRGRIALTCLEDRVPFYEKNGYVNHGQAESEHAGEIWYNMIKEIEG >gi|300496132|gb|AEAT01000118.1| GENE 61 63092 - 63592 882 166 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1070 NR:ns ## KEGG: LDBND_1070 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 166 1 166 166 287 96.0 1e-76 MTNVTIEQAVKGYLVFSAKEGKLFREGRSYLAGKTYHNRYLAIYEKLEDAVVNASQYPSE EGITIYEVSGWGQVTDFGKCKVTEWLKLDQIVAKKEWVALLGKQTNSNYASLRILAAKLS EDAAALKKLAQDKNQQVRSAVAENANTPALVLAKLGVTAGVNAMAI >gi|300496132|gb|AEAT01000118.1| GENE 62 64018 - 64641 302 207 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|154175107|ref|YP_001408238.1| ribosomal protein L22 [Campylobacter curvus 525.92] # 1 200 1 195 199 120 30 2e-26 IQVMNETITQLIQNYGYVAVALLIAAENIFPPIPSELILTFTGFLTLSANLSVPGAIIAS TIGAFIGAVTLYWVGTFFDQDRLSRFAASKVGRRFGLSPEKITKTENYFNSHGRAATFFG RFIPVVRSLISLPAGMSRFSLARFSFYTILGTAIWNTVLIYAGRFAGNAYQQVVQEFEGL SLIVLIAFCAIAAAVYLLKKKGLIFKK >gi|300496132|gb|AEAT01000118.1| GENE 63 65008 - 66024 1433 338 aa, chain + ## HITS:1 COG:FN0776 KEGG:ns NR:ns ## COG: FN0776 COG2502 # Protein_GI_number: 19704111 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthetase A # Organism: Fusobacterium nucleatum # 10 338 3 327 327 345 52.0 7e-95 MAKLVIPSDYDPKMTIRETEKAIRYIRETFQTEFGTAMNLERISAPMFVKKSSGLNDNLS GWEKPVSFTLHDGDEGELQIVHSLAKWKRWALKHYGFGHGEGLFTNMNAIRKDEEVLDNL HSVYVDQWDWEKVIDKSERTEATLRQTVQRIFETIKGMEYHVRAFYPRAAYHLPEEISFV TSEELEARLPSLTPSEREDKICQEEGAVFLEHIGGALPLSKKPHDLRAPDYDDWTLNGDL LFWYEPLQRAFEVSSMGIRVDEDRLQEQLKLAGAEDRLDLPFHQALLKGDLPYSIGGGIG QSRLCMLLLGKAHIGEVQASIWPDEIVEKCQAAKIQLL >gi|300496132|gb|AEAT01000118.1| GENE 64 66100 - 67398 1896 432 aa, chain + ## HITS:1 COG:BH1696 KEGG:ns NR:ns ## COG: BH1696 COG0017 # Protein_GI_number: 15614259 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Bacillus halodurans # 6 432 4 430 430 525 57.0 1e-149 MTELISIRESSKHVDEEVRMHVWLTDKRSSGKIVFLQLRDGTAFFQGVVRKNDVSEEVFE AAKGLRQEASFYLTGTIHEDARSHFGYEIQISDLEVVSNNEGYPITNKEHGIDFLLDHRH LWLRSRRPFAIMQIRNRIFKATVDFFENEGFVKFDAPLLMHSAPEGTTELFHIDYFDHDA YLSQSGQLYGEVGAEAFGKIFTFGPTFRAEASKTRRHLTEFWMMEPEMAWMHQDESLDLQ ERFLSYVVGQVLEHCEYELSILGRDLDKLRPAAEGNYTRLSYDYAVKMLQEAGKDFKWGD DFGAPDEAFLSERFDRPFFIVNYPVAIKPFYMKKNPENPLTYLCADVEAPEGYGEIMGGS EREADYDTLKAQIEEAGLNLDDYSWYLDLRKYGSVPHSGFGMGFERVIAWICKLDHVREA VPFPRMINRMQP >gi|300496132|gb|AEAT01000118.1| GENE 65 67470 - 68468 1192 332 aa, chain - ## HITS:1 COG:SP1854 KEGG:ns NR:ns ## COG: SP1854 COG1609 # Protein_GI_number: 15901682 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 328 1 330 335 221 39.0 2e-57 MATIREVAKAAGVSPATVSRVLNYDQTLSVNEATRQKIFETAEAMHYHKSRKTRKSKQKR LAICLWCDQDQEIKDLYYYSIRTSAQAEAKKQGLESQVIYPADPLPDPAALSGIIMIGYQ QYSPDRLNEVKKSGLPLVFVDTDTLKLGYCSVVADFGQAMQEALEVFWGQGKERIALLDG DLDSNFDKNNLVDFRFRDYKKSLAARSQYDPDLVYVGNFTPQSGYEAIKDALKSGFFPEA LIAANDAMAIGALKAFKEAGIKVPEEVSLISFNDTTAAEFANPALTSVHVETQQMGRASV KVMKDLLDDDEAGTYKVTFPTKLVYRESCPKA >gi|300496132|gb|AEAT01000118.1| GENE 66 68526 - 71549 3357 1007 aa, chain - ## HITS:1 COG:BH2723 KEGG:ns NR:ns ## COG: BH2723 COG3250 # Protein_GI_number: 15615286 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Bacillus halodurans # 13 993 4 1003 1014 816 44.0 0 MSNKLVKEKRVDQADLAWLTDPEVYEVNTIPPHSDHESFQSQEELEEGKSSLVQSLDGNW LIDYAENGQGPVNFYAEDFDDSNFKSVKVPGNLELQGFGQPQYVNIQYPWDGSEEIFPPQ VPSKNPLASYVRYFDLDEAFWDKEVSLKFAGAATAIYVWLNGHFVGYGEDSFTPSEFMVT KFLKKENNRLAVALYKYSSASWLEDQDFWRLSGLFRSVTLQAKPLLHLEDLKLTASLTDN YQKGKLEVEANIAYRLPNASFKLEVRDSEGDLVAEKLGPIRSEQLEFTLADLPVAAWSAE KPNLYQVRLYLYQAGSLLEVSRQEVGFRNFELKDGIMYLNGQRIVFKGVNRHEFDSKLGR AITEEDMIWDIKTMKRSNINAVRCSHYPNQSLFYRLCDKYGLYVIDEANLESHGTWEKVG HEDPSFNVPGDDQHWLGASLSRVKNMMARDKNHASILIWSLGNESYAGTVFAQMADYVRK ADPTRVQHYEGVTHNRKFDDATQIESRMYAPAKVIEEYLTNKPAKPFISVEYAHAMGNSV GDLAAYTALEKYPHYQGGFIWDWIDQGLEKDGHLLYGGDFDDRPTDYEFCGDGLVFADRT ESPKLANVKALYANLKLEVKDGQLFLKNDNLFTNSSSYYFLTSLLVDGKLTCQSRPLTFG LEPGKSGTFALPWPEVADEKGEVVYQVTAHLKEDLPWADEGFTVAEAEEVAQKLPEFKPE GRPDLVDSDFNLGLKGNNFQILFSKAKGWPVSLKYAGREYLKRLPEFTFWRALTDNDRGA GYGYDLARWENAGKYARLKDISYEIKEDSVLVKTAFTLPVALKGDLTVTYEVDGRGKIAV TADFPGAEEAGLLPAFGLNLALPKELTDYRYYGLGPNESYPDRLEGNYLGLYQGAVKKNF SPYLRPQETGNRSKVRWYQLFDEKGGLEFTANGEDLNLSALPYSAAQIEAADHAFELTNN YTWVRALSAQMGVGGDDSWGQKVHPEFCLDAQKARQLSLVIQPLLLK >gi|300496132|gb|AEAT01000118.1| GENE 67 71553 - 73436 2657 627 aa, chain - ## HITS:1 COG:STM4299 KEGG:ns NR:ns ## COG: STM4299 COG2211 # Protein_GI_number: 16767549 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 7 439 7 429 476 165 27.0 3e-40 MKKKHVSRLSYAAGAFGNDVFYATLSTYFIVFVTTHLFNASDHKMIFIITNLIAAIRIGE VLIDPLIGNAIDRTESRWGKFKPWVVGGGIISSLALLALFTDFGGLNQSNPVVYLVIFGI VYLIMDIFYSFKDTGFWAMIPALSLDSREREKTSTFARVGSTIGANLVGVVITPIVLFFS ASKANPNGDKQGWFFFALIVAIVGILTSITVGLGTHEVKSALRESKEKTTLKQVFKVLGQ NDQLLWLAFAYWFYGLGVNTLNALQLYYFSYILGDAHGYSLLYTINTFVGLISVSFFPSL AKKFNRKRLFYACIAVMLLGIGVFSVASGSLALSLVGAEFFFIPQPLTFLVVLMIISDAV EYGQLKTGHRDEALTLSVRPLVDKLGGALSNWFVSLIAVTAGMTTGSTASTITAHGQMVF KLAMFAFPAVMLLIAVSIFAKKVLLTEEKHAEIVDQLEAQFGQSHAQKPAQAESFTLASP VSGQLMSLDMVDDPVFADKKLGDGFALVPADGKVYAPFAGTVRQLAKTRHSIVLENEHGV LVLIHLGLGTVKLNGTGFVSYVEEGSQVEAGQEILEFWDPVIKQAKLDDTVVVTVINSET FANSQLLLPIGHSVQALDDVFKLEGKN >gi|300496132|gb|AEAT01000118.1| GENE 68 73875 - 74612 461 245 aa, chain - ## HITS:1 COG:Cgl1022 KEGG:ns NR:ns ## COG: Cgl1022 COG0599 # Protein_GI_number: 19552272 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Corynebacterium glutamicum # 3 104 4 105 107 143 63.0 3e-34 MVKQTAGRDQLGEFAPKFAELNDDVLFGEVWSREGQLPLKTRSIVTITALISKGITDSSL KYHLMTAKKNGVSKSEMAEILTHLAFYAGWPNAWAAFNMAKEVYGDDETFGHGGFFGMGE PNDGFAQYFTGNSYLNPVTKEDDPLQIHNVTFKPGCINHWHIHHASKGGGQVLIGVEGEG WCQIEGQDPIKILPGTIIEVPAGAKHWHGASKNSWFSHLAFMIPGEDLSNEWLEPVDEDF YNTLD >gi|300496132|gb|AEAT01000118.1| GENE 69 74605 - 75135 592 176 aa, chain - ## HITS:1 COG:CAP0107 KEGG:ns NR:ns ## COG: CAP0107 COG0789 # Protein_GI_number: 15004810 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 22 140 3 122 152 100 43.0 1e-21 MAEEKKPTEETKAKQGQEEKTFTISQVAEMMNVAPSTLRYYDKEGLLPNIKRVNGIRIFE VKDFRWLKVLTCLKNTGMPIRRIKEYAKLAQEGDKTINERYQLIKDQRQLVLDQIDQLNY YMKELDYKEWYYETALKLGSEGPLLEKRHPSINDIKEVPEKLDVKELMKERNQDNG >gi|300496132|gb|AEAT01000118.1| GENE 70 75431 - 75916 22 161 aa, chain - ## HITS:1 COG:FN1887 KEGG:ns NR:ns ## COG: FN1887 COG2963 # Protein_GI_number: 19705192 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 1 160 1 168 169 92 36.0 4e-19 MTKFTKEIKLAICHEWVDDHRRGTYLSRKYGMGRGGIQYLVDLIQKHGEDILDRPQQKYT ADFKLAAIDRVLLGGEALSQVSLDLGLTNTGILANWLRSSKENGYTVITKKKGRPPKNAQ KQGQTTDQRAGRAGKEAYSRACIHKKLEALIQERKSPEKKN >gi|300496132|gb|AEAT01000118.1| GENE 71 76015 - 78639 2561 874 aa, chain - ## HITS:1 COG:FN1022 KEGG:ns NR:ns ## COG: FN1022 COG0474 # Protein_GI_number: 19704357 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Fusobacterium nucleatum # 1 873 1 862 862 803 51.0 0 MKDFYLQSKDEVLKEFKASPNGLSSGEAKERLAKYGENALVEGKKKTVFQVFLDQFKDLM VIILIIAALISAFTGDAESTIVIIAVLILNAVLGTVQHVKAEKSLESLKSLSSPSAKVLR DGQKVEIDSKKLVPGDILVLEAGDLVTADGRILDNFSLQVNESSLTGESTNIDKADIDFD QERPLGDRLNMVYSSSLVTYGRANILVTGTGMGTEIGKIAKLMNDTKEKKTPLQQSLDKF SSKLATAILLICSVVFGLQIWRGQPLMDALLFAVALAVAAIPEALSSIVTIVQAMGTQKM AKQHAIIKNLAAVESLGSVSVIASDKTGTLTQNKMTVQDIYIGGEVLQPNELSLDNQLHR YLLYDVVLNNDSRLQADGKGIGDPTEYALLEMYRQVPGIDMGDDQIALSEDDLRDFLDRQ EEVPFDSDRKLMSTKHLIHTVPTIFTKGAVDVLLDRCVSYRIGDEIKPMTTEAKQQILDQ NQAFSENGLRVLAFAYKESDEELNLDAENGLIFIGLISEMDPPRPESIAAVAQAKKAGIK TVMITGDHKVTAVAIAKKIGIFAEGDLAVTGLELDAMSDKELDDKIEKISVYARVSPENK IRIVDAWQRKGKIVSMTGDGVNDAPALKKADIGVAMGITGTEVSKDASSMILADDNFATI IKAVANGRTVYENIKNAVMYLLSGNLSAIITVLFASIAGLPVPFMAVQLLFINLVTDSLP ALAIGMEPGANDILNRPPRDPKEGILNKQMVTRVAVQGALIAVSVIAAFLIGLKTSSAVA CTMAFSTLTFARLFHGFNCRSEHSIFKIGFKNNWYSLAAFVAGSLLLSLILFVPSLHSLF TVTPLVGGQVGMIALLAFLPTVVIQAVKVIREKK >gi|300496132|gb|AEAT01000118.1| GENE 72 79038 - 79628 884 196 aa, chain - ## HITS:1 COG:MA0513 KEGG:ns NR:ns ## COG: MA0513 COG0110 # Protein_GI_number: 20089402 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Methanosarcina acetivorans str.C2A # 3 187 10 196 199 251 63.0 7e-67 MKTEKEKMLAGQVYNPGQDKELMAELAACKAKCLRYNQLKTAAEKKELLKEILGQSGENC HIEPNFWCDYGWNIKVGNNFYANHNLTVLDAGGVTFGDNVFIGPDCGFYTSGHPLDAERR NTGLEYAYPITVGDNVWIGGGVRVVPGISIGDNSVIGAGSVVVKDIPANCVAAGNPCRVI RQITEDDANSDLNWKK >gi|300496132|gb|AEAT01000118.1| GENE 73 79837 - 80673 976 278 aa, chain + ## HITS:1 COG:no KEGG:Ldb1214 NR:ns ## KEGG: Ldb1214 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 278 1 278 278 525 96.0 1e-147 MYPHQEGFENWCRGPQRLSPKSIENADYCLDHFFSYAEVNFPSRNVNEITASNVRDYLQQ LATKENLQVTTVNKYVSYIKKYFYYLALAGITPSYRLLDLKGYSFERRKTYVIDWPEHLP ALIPYVKQPLTLWLLQLFALGYQAKELLGIRYSEVKDNLGEMTDYLTGTLSFKKDPDPYI FASRSGEPYASTNNIMQLVKADKDLLSPMPITLTNLRLSYVYSLISQQKYSDKELLEIFR CPPKRLAYYQYNAAQCNLIPFSEEMLKKDSPDAAPARK >gi|300496132|gb|AEAT01000118.1| GENE 74 80716 - 81822 1032 368 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1093 NR:ns ## KEGG: LDBND_1093 # Name: not_defined # Def: lipoprotein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 368 1 368 368 576 94.0 1e-163 MKKSILCSAAVLAALSLTACSKQSSSQDKQASQISSKVVKKGSSSSKSESSQASSSNSAS ASSSSSSQQTTLWNSQKSQQLASFMASWGAGMKQKYVSYTPSSPVDFYGTKAPADQLSGK YPVSVDDVNHEVAVKWSTTGQEAQNTYLIVACYSDATSARYADKHLYFFTIYNGKPVVLV TMQNQGNDRNNLGFRETENVNLKNGFNKIVGTSGTTNSNTATDNGSAGLPVSDDQAVQAF YTFLRQHEEGSDIYNSFKQDEIQLLFFNDVSGKNVASDVNKAVTRVFPKNTYEVRAQPHS EGQVYFQRISDDTIRVFNVPDAFQDDRWTKNSAWAVAQANNYMDHPKVMKFSPTDSTMLN LMKSKLTH >gi|300496132|gb|AEAT01000118.1| GENE 75 81907 - 82950 1436 347 aa, chain - ## HITS:1 COG:SP1855 KEGG:ns NR:ns ## COG: SP1855 COG1063 # Protein_GI_number: 15901683 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Streptococcus pneumoniae TIGR4 # 1 347 1 345 345 494 72.0 1e-139 MKAAVFEEAGKVEVEDVAMPTIQDPEDVIIKVVRTCVCGSDLWAYSAGDAKEKHSVNDGH EAIGIVEETGSAITTVKKGDFVIVPFTHGCGHCAACLAGYDGTCDNHPGYSNWGNGSQSE YVRFPYGNWALVKVPGKPEDYTEGMLKNLLTLADVMATGYHAARSANVQPGDKVVVIGDG AVGQCAVIAAKMRGASQIVIMSRHEDRQQMALESGATAFVAERGEEGIAKVKEILGGEAD AALECVGSQAAMDQALGVLHKGGRVGYVGVPHEDGLNMGMLFSHNISVAGGSASVTTYDK LVLLKAVLDGDINPGKVFTKTYKLDDINQAYRDMADRKTIKSYVVVD >gi|300496132|gb|AEAT01000118.1| GENE 76 83132 - 84472 1550 446 aa, chain + ## HITS:1 COG:MA1121 KEGG:ns NR:ns ## COG: MA1121 COG0534 # Protein_GI_number: 20089987 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Methanosarcina acetivorans str.C2A # 3 441 13 462 475 203 31.0 5e-52 MDELFAKAPVKKVYFQLSLPLVLAMITSMIYNLADTFFVAQTGDTKLVAGVTVGAPLFAF LIAISDIFGLGGSSLVSRLYGKKDFALSKRVSSFCQYAGIISGLLTTALMLAFEKPILGF LGAKPATYQAASDFYQAIALGAVFIVYSVIPQNLIRTEGLAKESMVTTIVGTITAIILDP IFLFVFKMRAWGVGIANVIGYAVTSFMLVYYVNKKARYITLDPKLVKIDGANIKEVMEIG IPGSITNFAQSFGMALLTSSLAGYGASRVAALGITQKIYNIVVLVMVGFAFGSQPLIGYN YGAKNWERLKAILRFDMLVEVVYAVISAAILLIFAHPIAALFMNKPAIITSTSYMLLATL ITTPLVGLILVYTTVFQSTGNGFAALIMALSRQGVIYVFALELLKNTAGYHGILWAQSVS DVLTCLIGYALYRKNLNFKKLEKPSA >gi|300496132|gb|AEAT01000118.1| GENE 77 84865 - 85104 218 79 aa, chain + ## HITS:1 COG:no KEGG:Ldb1214 NR:ns ## KEGG: Ldb1214 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 73 196 268 278 89 64.0 4e-17 MQHVKADKDLLAPMPLTLTNVRISFVYSLISKQDYSDVELMKKLRLNSKSLAYCQFYATK SNLIPFDLERLKKQNENNQ >gi|300496132|gb|AEAT01000118.1| GENE 78 85175 - 85741 938 188 aa, chain + ## HITS:1 COG:lin1308 KEGG:ns NR:ns ## COG: lin1308 COG0681 # Protein_GI_number: 16800376 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 38 174 31 180 188 113 42.0 2e-25 MKKKNKQAAEEESWGKFFRDVLVMFLVFVSIYYVIFSFFLANEVVSGPSMQPTFEDGDRL IAVRHFTPKRNDVVIIKAPDQANAMYIKRVIGLPGDTVQSKNDALYINGKKTAQPYLNNK YKKADRLAGVNYTSNFKIKLKKNQYWVMGDHRDVSKDSRYFGPIKRSKILSKAVLRYWPV TQIGTNFY >gi|300496132|gb|AEAT01000118.1| GENE 79 85795 - 86364 793 189 aa, chain + ## HITS:1 COG:BS_sipT KEGG:ns NR:ns ## COG: BS_sipT COG0681 # Protein_GI_number: 16078505 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Bacillus subtilis # 2 184 7 189 193 109 37.0 3e-24 MTNKNKKQAPKEESWGKFFRDVLVMFLVFVSIYYVVFSFFLANEVVSGPSMQPTFEDGDR LIAVRHFTPKRNDVVIIKAPNQPAVMYIKRLIGLPGDTVQSKNDVLYINGKKVAQPYLNN KYQKADHLAGVTYTNNFKVKLKKNQYWVMGDHRDVSNDSRRFGPVSRSAILSKVVLRYWP VTQISSDFY >gi|300496132|gb|AEAT01000118.1| GENE 80 86434 - 86613 355 59 aa, chain + ## HITS:1 COG:no KEGG:Ldb1216 NR:ns ## KEGG: Ldb1216 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 59 1 59 61 100 98.0 1e-20 MKPEELSDAIIEFQSKHTVSDTTLAFASHLSVEKVHAMKQGRGNFTSDEINQMLDYLQS >gi|300496132|gb|AEAT01000118.1| GENE 81 87000 - 88238 2097 412 aa, chain - ## HITS:1 COG:L60596 KEGG:ns NR:ns ## COG: L60596 COG2195 # Protein_GI_number: 15673792 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Lactococcus lactis # 1 409 1 410 413 432 54.0 1e-121 MEYPTLLPRFLKYVKINSRSDEHADRFPSTQREVDYQLVIMKELEELGLSDVHYNEKAGT VIATIPSNVDWDVPVMGFLAHCDTADFNSENVKPQITENYDGESKIQLGDSEFYLDPAVF PNLKKYKGQTIISASGDTLLGGDDKCGDAELVTFAEYLLAHPEIKHGEIRLGFTPDEEIG TGAQHFDVEDFNAAFAFTVDGEGPGKLDWGTFSAAQFELDIQGVNVHPAVAKGQMINAIQ VGIDFQNSLPQDEVPEKTEGEEGFYHLMDFSGTVDNAHLAYIIRDFKRDGLEARKNLVKE KVAELNAKYGERIKLKMWDQYYNMADELAKHMEIIDLARDAYRACGLTEINEEPVRGGTD GSQLTYMGLPCPNLFAGEENMHGRYEYTVLESMWKAVDVMIKMAELQAERNK >gi|300496132|gb|AEAT01000118.1| GENE 82 88282 - 89079 957 265 aa, chain - ## HITS:1 COG:SP1609 KEGG:ns NR:ns ## COG: SP1609 COG0327 # Protein_GI_number: 15901449 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 8 264 6 265 265 198 40.0 1e-50 MTKVKDIVAKLNEAFPESIASAGDPAGLQIGSLEAPVHKILVTLDVRPNVVDEAIRRGAD LIVSHHPLIFRPVNNLDYSDPQKAMYAKIIANGITVYSIHTNSDKAQDGSSDWQAEELGL LDVTGFAPDDDGIAIGRKGRLPRAMKAIDFAHYVKEKMGVDLVRLICADQDKMVETVAFV CGDGNKFWKQALADKCDAYITGDVYYHTGHDMISSGLVVVDPGHYTENLFKYEAAKRLSA WQKEEGWSVECLISAESTDPFQNIF >gi|300496132|gb|AEAT01000118.1| GENE 83 89072 - 89839 1010 255 aa, chain - ## HITS:1 COG:L84257 KEGG:ns NR:ns ## COG: L84257 COG2384 # Protein_GI_number: 15673054 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Lactococcus lactis # 26 243 6 229 230 154 39.0 2e-37 MSSDIRSQRLLFGYIAHVFCSSALLMNLRLNRLAEMVDPDSRLADIGTDHAYLPILLVES GKISHAIASDVAAGPLENAKTDIAAAGLSDQIETRLGSGLETIKESDQIDTVVIAGMGGK LMVNLLSEAASRGVYYPSLVLEANIGENTVRRWLMANKYEIVAEDIVYEAGHIYELIKAR LTDQVHELTVREQEFGPLLLKNKTDVFYKKWQGQEAYYQKLLANLNKAREKDLTRIKEVE NLLAMIKTELGGEND >gi|300496132|gb|AEAT01000118.1| GENE 84 90040 - 91338 583 432 aa, chain - ## HITS:1 COG:TM1044 KEGG:ns NR:ns ## COG: TM1044 COG0675 # Protein_GI_number: 15643802 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Thermotoga maritima # 11 375 3 340 405 107 26.0 4e-23 MAEQIEEVPAELIQTRVYELHPNKTMRKVLDEACDYRRYCWNQGLALWNEMYKARKAIKS SLASDPKKLTEEQKVLLKEKPSPSERRVRNMLVADKKDWQYTQSARILQLAISDLGKAWN NFFDKAQPGWGKPKFRSKREARQGFKGDRSKIKDGILYLERARRSSVPKDQWCGFKLSEK PLSDEFGVVSYFKEKGRYYVAIPYKIKAEDVKLPDKTGKATAVDVNVGHFDYTGGRVNVL PKRLDRIYKKIKHYQRQLAKKRVKNGEAACESINYLKTKAKLQACYRKAGNIQNDLMHKF TTELINDYDKIVIENLSVKGMLMSHVASKGVHRSMFGKFRQILTYKCDWYGKELILANKL YPSTQRCAACGNVKKGDDKITLYGNKKHGTKHNEYVCYNEKCPNYNKVVDRDKNAMLSLL ALTEHPELNHAL >gi|300496132|gb|AEAT01000118.1| GENE 85 91704 - 92144 518 146 aa, chain + ## HITS:1 COG:SP0740 KEGG:ns NR:ns ## COG: SP0740 COG0494 # Protein_GI_number: 15900635 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 135 1 136 151 127 49.0 1e-29 MDRTEPTTLTNMCMIVDKDRVLTIDREDPVWPGLAFPGGHIEKHESFHDSVIREVKEETN LDIVSPRLVGFKQFFDKLDRRYLVFFYRADQFSGSLHASREGKLEWVKISDLPKRQLAYN FDRDLEVFLKSDLDEHVLLDKKDFLY >gi|300496132|gb|AEAT01000118.1| GENE 86 92144 - 92971 1347 275 aa, chain + ## HITS:1 COG:no KEGG:Ldb1221 NR:ns ## KEGG: Ldb1221 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 13 275 13 282 282 439 91.0 1e-122 MSKKKKNNNKSKRIWGRVVTALLFLALFAFAGLYIKNYPVEKDVKLVATQPKALKAKKTV AEKDIWGYPFAKCYTKKIKYLSGQRYGKTDVCRRVYPKKSYFHDGWDFGWSEVGNKAAVL AIHPGTVKKVAYCTGLGWYIWVVSPDGYVEVYQEGFANRSDITVKAGQKVKLGDNLGRLT DSHLHLGITKTSADYISKHGHPYKNYWRDNDTWLNPMKVITDSLQLQEDVKEYNAKAASY NAKATSYNEKLAANKKKLKVEESKHPYHYLKSFIK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:40:53 2011 Seq name: gi|300496113|gb|AEAT01000119.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00121, whole genome shotgun sequence Length of sequence - 20343 bp Number of predicted genes - 18, with homology - 18 Number of transcription units - 8, operones - 3 average op.length - 4.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 99 - 137 5.4 1 1 Op 1 . - CDS 157 - 612 314 ## COG0615 Cytidylyltransferase 2 1 Op 2 . - CDS 667 - 1875 918 ## Ldb1942 hypothetical protein 3 1 Op 3 . - CDS 1917 - 2675 273 ## LDBND_1787 lipopolysaccharide biosynthesis glycosyltransferase 4 1 Op 4 6/0.000 - CDS 2696 - 3814 521 ## COG0438 Glycosyltransferase 5 1 Op 5 2/0.000 - CDS 3807 - 4637 642 ## COG1216 Predicted glycosyltransferases - Prom 4670 - 4729 3.2 6 1 Op 6 1/0.000 - CDS 4740 - 6167 1083 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 7 1 Op 7 . - CDS 6170 - 7285 1927 ## COG0562 UDP-galactopyranose mutase 8 1 Op 8 . - CDS 7306 - 8040 853 ## LDBND_1792 lipopolysaccharide biosynthesis glycosyltransferase 9 1 Op 9 . - CDS 8099 - 8752 527 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis - Prom 8840 - 8899 5.4 - Term 8891 - 8938 12.7 10 2 Op 1 1/0.000 - CDS 8951 - 9931 1035 ## COG1316 Transcriptional regulator - Prom 10063 - 10122 4.5 - Term 10113 - 10155 8.2 11 2 Op 2 . - CDS 10171 - 11400 1511 ## COG1316 Transcriptional regulator - Prom 11432 - 11491 4.4 - Term 11511 - 11550 7.7 12 3 Tu 1 . - CDS 11564 - 14830 4379 ## COG5263 FOG: Glucan-binding domain (YG repeat) - Prom 14886 - 14945 7.1 + Prom 14917 - 14976 4.2 13 4 Tu 1 . + CDS 15181 - 16056 1228 ## LDBND_1798 DNA-entry nuclease - Term 16325 - 16363 6.2 14 5 Tu 1 . - CDS 16373 - 17155 977 ## Ldb1957 hypothetical protein - Prom 17186 - 17245 4.7 - Term 17232 - 17260 3.0 15 6 Tu 1 . - CDS 17261 - 17629 520 ## LDBND_1801 transcriptional regulator (xre family) - Prom 17701 - 17760 2.2 - Term 17718 - 17752 4.0 16 7 Tu 1 . - CDS 17766 - 18779 1651 ## COG0240 Glycerol-3-phosphate dehydrogenase - Prom 18840 - 18899 6.2 + Prom 19223 - 19282 6.0 17 8 Op 1 . + CDS 19321 - 19944 754 ## LDBND_1804 hypothetical protein 18 8 Op 2 . + CDS 19959 - 20099 165 ## LDBND_1805 hypothetical protein + Term 20172 - 20215 6.1 Predicted protein(s) >gi|300496113|gb|AEAT01000119.1| GENE 1 157 - 612 314 151 aa, chain - ## HITS:1 COG:SA0597 KEGG:ns NR:ns ## COG: SA0597 COG0615 # Protein_GI_number: 15926318 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Staphylococcus aureus N315 # 1 129 1 127 132 166 67.0 2e-41 MKRVITYGTFDLLHYGHINLLRRSKALGDYLIVALSTDEFNWKSKHKKTYFSYEERKQLL EAIRYVDLVIPEKDWDQKRSDMHEYHIDTFVMGDDWKGKFDFLKEEGVDVVYLPRTPEIS SSKIKQDLYDANTVTGESCLFHDDLDVESKS >gi|300496113|gb|AEAT01000119.1| GENE 2 667 - 1875 918 402 aa, chain - ## HITS:1 COG:no KEGG:Ldb1942 NR:ns ## KEGG: Ldb1942 # Name: epsIIJ # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 402 1 402 402 660 98.0 0 MAYLIAISMSLLVAAFVPRLIEENRHRTFLLVKQPWYKDTKKWQLIGLVSLSALPILLIS CFRYGVGTDYFHTYVPQFLSIVNGSYTHYYEPGFYLLNLLVASLTSDPQWLIALCALLTL GLVYVVTVFLSDNYFMSILLFYLTYTYFVSINNIRQALASAILLPALYFLVRKKKIAFVL LTILAGTMHQSAYYFLIMAVLDLLPLSQLSYLLINLGFYIFIKLLGKRILALLALLIPRV QMYLNQGVYLGKTIGKLYLGVQIAISLIYLYLEYQQRFNRDLTQFSYNKSSFKSQLVGML QLDDRQKLGNSAEEWTIAKLLQWMVLIVCAMDGILPATYRVVRIFTYAQFIFIPNAISKF ERDDKRRLILYILVIVIFGILFVHDFAMGFEQVYPYKSIFNH >gi|300496113|gb|AEAT01000119.1| GENE 3 1917 - 2675 273 252 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1787 NR:ns ## KEGG: LDBND_1787 # Name: not_defined # Def: lipopolysaccharide biosynthesis glycosyltransferase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 252 1 252 252 499 98.0 1e-140 MIYIITHKRVKLPKLDKYLPLQVGSSLHEHLDYLTDDTGDNISEKNPNYCELTGLYWIWK NTKDDYKGLVHYRRYFGKSDFSSSFEQIYSYDELKGFLQDHDLVTSYVANFKQNAHDEIM IHCCTEEIFGKLRASVAKCSPEYLSDFDKFFNQNKAVLFNMMFCRGDLFDEYCQWLFTIL FNLEPQVDLSSLNAYQQRLYGFLSERLLNIWILHKELKVKHLPIVNTEMPMKEKIANYRR RITNQIFYTLKK >gi|300496113|gb|AEAT01000119.1| GENE 4 2696 - 3814 521 372 aa, chain - ## HITS:1 COG:SP0353 KEGG:ns NR:ns ## COG: SP0353 COG0438 # Protein_GI_number: 15900282 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 50 338 48 329 372 163 34.0 4e-40 MTKRILEVNVDDNGYSGVYSLIKRVIENKPADYQIDLACLEPFESQQNIDYLNKLGTQVY YIGYPGNKIKKQLKYYEKLQKVVKDGNYDYVHIHGDVANKLYVTALAARKADSGVKIILQ SHASDVDGSHRQLKRFIHKSLRGKLVKLADCYVSVSDLASNWMFPSIPKSQVIKIMNGVD LAAFRYDPIIRKRIRKELGLSRKHVLGHIGRFAYQKNHQYLIQVFAKVYAQDPQARLLLV GKGDLQDECKHQVHDLGLDKQVIFYGLSSNTSELFQAMDVFLLPSHFEGLPIVGVEAQAA GLPVIFSDQITSEAKMTNNVSFLPIDETSLSAWQSQVIRDLELGHRDNYDLLSRQKLDIT DTVAAFMKLYNS >gi|300496113|gb|AEAT01000119.1| GENE 5 3807 - 4637 642 276 aa, chain - ## HITS:1 COG:MTH343 KEGG:ns NR:ns ## COG: MTH343 COG1216 # Protein_GI_number: 15678371 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Methanothermobacter thermautotrophicus # 9 241 33 283 328 92 29.0 6e-19 MQSVAEADVLVVDNASTDGTKDYIADYIDQGQIIYINTGENLGGAGGFNFGMRKACEAGY KYVWIMDDDAIVKRDALKELLKADQLLKGNYGYLSSTVFWTDGQPCVMNRPKLVKDWTSD LGYLSAGLVRTYYSTFVSFFVKTATVKELGLPIKDFFIWGDDVEYSNRLSKKYPCYVVGK SQVIHKTRDNNGSNIAKEQGDRIGRYKFAYRNECVIARENGMKGRLRQFAKVNYNMLRVI FTHNPHKLKKLGIILGASVEGIFFRPEIEYIEEQHD >gi|300496113|gb|AEAT01000119.1| GENE 6 4740 - 6167 1083 475 aa, chain - ## HITS:1 COG:SA0127 KEGG:ns NR:ns ## COG: SA0127 COG2244 # Protein_GI_number: 15925836 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 5 458 8 460 476 175 26.0 2e-43 MRVVKNYLYNVGYQVLAIIVPLITSYYVSRVLSPDGVGANAFTNSIIQYFMLLANIGIGY YGNREIAYVRENRQAMAKTFWEIQIVKTIMTILSYLAFITFMFFYQGNQLYMWAQSINLI AVAFDISWLYEGIEDFRRTVLRNTFVKIVSMVAIFVFIKSSSDVALYIAILAISTFLGNL TLWPHTFKMLPGVNLASLKPLRHFKPTIAMFIPQIAIQLYVQLNRTMLGLMVDQKASGFY QYSDNLVKLILAFVTATGTVMLPHVANAFAKHDMKKVHEMLYKSFDFVSALAYPMMFGIA GVSLTLAPLYYSAKYAPVGPAMLIESIVILMIGWSNVIGTQYLLPVNRVKDFTTSVTIGA VVNIILNFPFISLWGLNGAMWATVLSEVAVTGYQLYVVRKDLDLSLMFQSSWKYLLASGV MFVAVFGMNTHLKASWLWLICEVAVGVVIYAGLVYFLKAPIIDQAKNLISKKLQK >gi|300496113|gb|AEAT01000119.1| GENE 7 6170 - 7285 1927 371 aa, chain - ## HITS:1 COG:glf KEGG:ns NR:ns ## COG: glf COG0562 # Protein_GI_number: 16129976 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-galactopyranose mutase # Organism: Escherichia coli K12 # 1 365 1 360 367 453 60.0 1e-127 MSKYLVVGAGLFGAVFAREAAKRGHEVTVIEKRDHIAGNIYTKEIDGIQVHQYGAHIFHT SNKDVWEYVQQFAEFNRYTNSPVANYKGKMYNLPFNMNTFTQMWGVRTPQEAMDKINEQR AEMAGKTPQNLEEQAISLIGRDIYEKLIKGYTEKQWGRKATELPAFIIKRVPVRLIYDNN YFNDDYQGIPKGGYTKLVENMLKHDKITVELDTDFFAKKNEYLQKFDKVVYTGPIDEFFD YKLGELEYRSLRFETEEKDVGNYQGNAVINYTDAETPYTRVIEHKHFEFGKGDPDKTIIT REYPADWHKGDEPYYPVNNDRNNDLYAQYKEMADKEDAKVIFGGRLGQYKYYNMDQVIAA ALEAVNEEFGK >gi|300496113|gb|AEAT01000119.1| GENE 8 7306 - 8040 853 244 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1792 NR:ns ## KEGG: LDBND_1792 # Name: not_defined # Def: lipopolysaccharide biosynthesis glycosyltransferase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 244 15 258 258 427 86.0 1e-118 MPDDSVYLPVLVGAVKNYKPGIDYQRDDAGKNISAKNPYYNELTGIYWAWKNLKDVDAVG LVHYRRYFYVSKPHDLDHVAKGADYEHFLADHDVIVPKKRNYYIESNYDHYVHAHPAEPL DKTREIISADYPDYLPAFDMMMKRRSAHMFNMFVMKKEQFNDYCEFIFSVLSKLEGQIDI SSYSVQDQRVYGYISERLMDVWLYTTKQNYTEMTWSQLGGEKKIKKGINLIKRKLGIGKK QTHF >gi|300496113|gb|AEAT01000119.1| GENE 9 8099 - 8752 527 217 aa, chain - ## HITS:1 COG:CAC3059 KEGG:ns NR:ns ## COG: CAC3059 COG2148 # Protein_GI_number: 15896310 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Clostridium acetobutylicum # 2 216 11 222 223 194 46.0 8e-50 MIKKETSSNYEKKTGAYKYVKRFLDIVGSLLALIIFSPIFLILAILIKSRDGGSAFFAQE RIGKGGKPFKMYKFRSMKMDAEEILKSDPELYQKYVANDYKLLADEDPRITPIGRWMRRT SVDELPQFVNILKGDMSIIGPRPVVEKELAEYGNRKDKFLSVRPGAMGLWQATGRSNISY PERCDVELEYIDNISFTYDVKIFFQTIFSIFKKEGAY >gi|300496113|gb|AEAT01000119.1| GENE 10 8951 - 9931 1035 326 aa, chain - ## HITS:1 COG:SP1942 KEGG:ns NR:ns ## COG: SP1942 COG1316 # Protein_GI_number: 15901766 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 26 319 12 310 338 177 37.0 2e-44 MNEKKLNTRTEKRKKRNKFWRIFWIVVGVFVVGLAGFAWYEYSSVKNAANTAYRSGGISS AENGSKNDVISNKKPMAVLLMGTDTGALGRTYKGRTDSIMVAVLNPKTKKTTLVSFERDI QVNLPDYPEHSPSKLNAAYAYGNAGELAKVLKKYFNIPINAYVLVNMGGLKTIVDKVGGV DIAPVLSFSYEGYTFTKGQKTHMDGAKALAYSRMRYDDPEGDYGRQKRQRQVLQALVKKA ESAQTLLNTSFISSLSKQVQTDLTFSDLTSLASSYLPATKNVVTDYTHGTGFMQDGVSYQ QVSTTERQRISDLIRKAMGLKTKSVQ >gi|300496113|gb|AEAT01000119.1| GENE 11 10171 - 11400 1511 409 aa, chain - ## HITS:1 COG:SP1942 KEGG:ns NR:ns ## COG: SP1942 COG1316 # Protein_GI_number: 15901766 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 29 323 11 310 338 178 37.0 2e-44 MKTLKNDNDVNTRVGKRKKRGKAKRVFWSILAVLLLGIGGFAYYEYHTVKNGADSAYKSG GISSAENGSKNSVISSSKPIAILLMGTDTGALGRTYKGRTDSIMVAVLNPKTKKTTLISF ERDQQVNLPDYPDKSPSKLNAAYAYGNAKELAKVLKKYYNIPINAYVLINMGDLKTIVNK VGGIDIAPVLSFSYEGYTFTKGKTTHMNGAKALAYSRMRYDDPQGDYGRQKRQRQVLSAL LKKAESATTLLNSSFISSLSKQVQTDLTFADLTSLAKNYLAATKNLKTDYTHGTGYMQNG VSYQKISVSERQRISNLIRKALGLKTKKISTDSIDTSTSSSTSSSSSSSAGNTPGSNASG STTAPGSDTNTGSNYNSNYGSNSNSTYNSGYGTQDSSQNMYGQNTGTGY >gi|300496113|gb|AEAT01000119.1| GENE 12 11564 - 14830 4379 1088 aa, chain - ## HITS:1 COG:L88643 KEGG:ns NR:ns ## COG: L88643 COG5263 # Protein_GI_number: 15674205 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Lactococcus lactis # 767 967 101 291 483 85 32.0 6e-16 MKKEEKKRGLFGKDYLMLSAMTIGLLAGAGKAQTVKADTVEKATTEVKAATTATTTTANT TAAPTNTTVATTTADTTTATNNNTAAGTNNTNTANNGTANTVTGNTNQATTGTTTGTPDP TNPGSTGTTTGTPDPTNPGSTGTNTGTKTDTKSTGNTTDNPGSASDNTQTHPGSSTGNTS SDETSELGKQNVSEDVSNENIGEGSVINSYLTTQAAKDNYAKLNNTGKKIVAAALREGST LDLDKLTDTQITALTKMVLNKTEDNQYTLKDYDSITKKIVERDSSSQIPLFKGEKIVNMP GLDKVKDAETGEEATMDIWDSWPVQDPETGYVQNWNGYQLAVAMMGIPHKSDSHLYLLYN KYGDNNFANWKVAGSIFGYNNDPKTGQWSGSAMLNADGSIQLFYANVLAQESNNQRVATI TVNIGENADGVYIKSTENDHILFIGDGTVYQNYEQWKNSENRGANNPQMRDGHVFKDSDG TYYLAFETATGDLGDDPEGADNLYDWSRYGGNAAYNVSELFKLLNSTDMNTRAAVSNSAI GLLKLDMSDPKNPKVATDENGKQVLYKPLVKTVLSGDEIERPDLIKLNGKYYLFVDGRVN HASDTDFAVQTNIAVGDNVTMLGFVSDKVDGDYIPLNGDGLVLGASVPSTWRTATYSYYV VKINPANLKSDKITVNGVTYDKDYFVNHVVLINSYMGNRGEIAGKGLNSTLGPSFLVLVD GDKTTVLANSVTDQGVWDWNENSPKPELAAASLKEAKRSTDSYSFQVNKDGYWYLYNDST DDGSIKMQTGFQYLAGQNKTVYYDPATGHMLYGFQKINGKTYYFVPDSGARFSGQIKLSG YWYLFSDKDGVMQTGFQYLAGQKKTVYYDPATGHMLYGLQKINGKTYYFAPGSGARVVGQ IKINGKWYMFDKKTGVMQTGFHYIASQKKTVYYSPKTGQMLYGLQKVNGKWYMFDKRSGA KISYQTVGTYIRLKHNAALYSAKGKKTEAKSYKKGLYTKSVGIRIIKGKVYYKLSNGKYI KAGNITVGKKRTLKKNAYIYVKKGKKVKALKGVQKKGSTKYTYGSVVIFQGKKFYAVASG KYIKSANF >gi|300496113|gb|AEAT01000119.1| GENE 13 15181 - 16056 1228 291 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1798 NR:ns ## KEGG: LDBND_1798 # Name: not_defined # Def: DNA-entry nuclease # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 291 5 295 295 475 98.0 1e-132 MQKLTALLLASASFLVASPAKASSLADRNYQGQKVITVNQDRPTFSKKALSTKKGAWQSY HKLDSLNRAGEADALLNKRLMPAKAREPLYWNPTAWHNKKIAGGWLYNRSHLIGYQLTGQ NNNPKNLITGTRQLNDPGMLKYENQVASYIKSSSRHYIRYRVKPIFRGRELLARGVEMEA QSTGSNAVRFHVYIFNVQDGVKLNYSNGTSVVTGAAKKFAKKTVVKKAAAKKSTSSKKKI KTSTTGRIVGNRRSKIYHVPGQAGYHMNSANAVYFRTETEAKRAGYRRALR >gi|300496113|gb|AEAT01000119.1| GENE 14 16373 - 17155 977 260 aa, chain - ## HITS:1 COG:no KEGG:Ldb1957 NR:ns ## KEGG: Ldb1957 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 142 2 143 144 209 95.0 9e-53 MKEKNWLTWLTVLALVVGFAAMGASVWLSVQAAKQTQRNSQLAGQLYQASRTKSQEAFSV KKRLDKLASDNSSLKKKNSRLAKENQALKQANQDLLAASAAAGLNVWETEEKSGKLQLEI DNQTGQAVSDLLVLAVAANGRITLNSLPSYFPVGGAKPRYFYRKKVAIGKTEGSLTGAYA GSDMVCLFADASGVYWFKGNRGQIEKIGSQAHFKKLLRQISLNKLEESPLPVKKTKTEKK KMSKKTTKKTEKQSSKKKAE >gi|300496113|gb|AEAT01000119.1| GENE 15 17261 - 17629 520 122 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1801 NR:ns ## KEGG: LDBND_1801 # Name: not_defined # Def: transcriptional regulator (xre family) # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 122 1 122 122 207 96.0 1e-52 MEKNMIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKTVEKIANIFGVS RNSILAGLPVEMLEQEGQEDRRVVDLTDLDIRLTYLGQQVPREYIDIIEKLMRCDIAERD AQ >gi|300496113|gb|AEAT01000119.1| GENE 16 17766 - 18779 1651 337 aa, chain - ## HITS:1 COG:FN0906 KEGG:ns NR:ns ## COG: FN0906 COG0240 # Protein_GI_number: 19704241 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Fusobacterium nucleatum # 1 335 1 332 335 310 50.0 3e-84 MAKIGVLGAGTWGMALARMLSNSGREVTVWSALPQEVDELSRTRRQKNLPGMVIPDEIKF TKEIAEACQDKDIILFAVPSVFVRSTAKTAAAFIPDGQIIVDVAKGIEPDTLLTLTEVIA DELNKDGKHGNVHYVALSGPTHAEEVAKDLPTTIVSACEDQAVAEKVQDVFMNKNMRVYT NSDRLGVELCGALKNVIALASGICSGLGYGDNMRAALIIRGMAEIKRLGIKMGGKEDSFD GLAGMGDLIVTATSKESRNNNAGYLIGKGKSAEEAKKEVGMVVEGINAIPAALELADKYD VEMPIVFAVDAVVNRGADARETVDALMLREKKSEMTK >gi|300496113|gb|AEAT01000119.1| GENE 17 19321 - 19944 754 207 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1804 NR:ns ## KEGG: LDBND_1804 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 107 207 1 101 101 197 98.0 3e-49 MFKQLRKANQNDYLLITATLILLVVFNLSLLSYVQGQQKAAERDQAKDYEEALKFADAAL YEVKIAGKNNFASYKSSLTEKKHHNQLGLGLRVLAAGDPTPLLVMQMDTKEAIYVNKSLL ELFGCELSSEFYDYYGQSLLNLISPGDQARVKEEFTDFVESAVDEERFRGDCQILTADAR TLRVFCDIKYSVNQRYGALVYISFVLN >gi|300496113|gb|AEAT01000119.1| GENE 18 19959 - 20099 165 46 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1805 NR:ns ## KEGG: LDBND_1805 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 46 1 46 46 81 97.0 8e-15 MAEEEKKLNITNLQILGQDDSPLFQGAGSEGKSVTYPKKFANHPGF Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:41:27 2011 Seq name: gi|300496104|gb|AEAT01000120.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00086, whole genome shotgun sequence Length of sequence - 8788 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 4, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 363 - 422 6.8 1 1 Tu 1 . + CDS 451 - 1851 1497 ## COG1672 Predicted ATPase (AAA+ superfamily) - Term 1872 - 1903 -0.7 2 2 Tu 1 . - CDS 1972 - 2208 275 ## Ldb1504 hypothetical protein - Prom 2438 - 2497 4.0 3 3 Tu 1 . - CDS 2525 - 2848 208 ## Ldb1505 hypothetical protein - Prom 2875 - 2934 4.5 - Term 2953 - 2992 7.5 4 4 Op 1 2/0.000 - CDS 3034 - 4965 2982 ## COG0441 Threonyl-tRNA synthetase - Prom 5203 - 5262 5.4 - Term 4981 - 5020 8.2 5 4 Op 2 8/0.000 - CDS 5266 - 6189 1325 ## COG1484 DNA replication protein 6 4 Op 3 6/0.000 - CDS 6200 - 7534 1972 ## COG3611 Replication initiation/membrane attachment protein 7 4 Op 4 1/0.000 - CDS 7538 - 8005 763 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 8 4 Op 5 . - CDS 8019 - 8603 605 ## COG0237 Dephospho-CoA kinase - Prom 8683 - 8742 4.4 Predicted protein(s) >gi|300496104|gb|AEAT01000120.1| GENE 1 451 - 1851 1497 466 aa, chain + ## HITS:1 COG:MA0050 KEGG:ns NR:ns ## COG: MA0050 COG1672 # Protein_GI_number: 20088949 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Methanosarcina acetivorans str.C2A # 1 411 1 394 463 281 40.0 2e-75 MFIGRNQELTALNKLYQEDSFQFAVIYGRRRIGKTSLINQFLKGKRAIYFTGLEENALEN LARFSDAIHAYEDPSYLDGPNFASFEQAFKYLVHLSEKNGRLILVIDEFPYLAKAYPPIS SMLQSYIDHYFKQNKLFLILCGSSMPFMEKQVLGYKSPLYGRRTAQFKLKPFSLHDAEEF FPQLNKEEVFELNAITGGIPLYLSLMSPKKSLRENIKDNFLTTSAMLYDEPMSLLNQELR EPASYSSIISAIAAGASRQSEISTKTGIASGALSPYLDNLIDLGIVEKRLPVTELDKARS RKTIYAIKDGMFRFWYTFVGKRVSFIERGITEPILDYIIKQLPHFMGPEFEKLSQEYLWS KLFDPDLVPEPFVNLGNWWGPDPKEKKQVEMDIVGFDDQKLNGYFGECKWKNEPISADIL ETLIYRSSLFPTPKENYYLFSKTGFTDKCQQLAQQVDCHLITFDMM >gi|300496104|gb|AEAT01000120.1| GENE 2 1972 - 2208 275 78 aa, chain - ## HITS:1 COG:no KEGG:Ldb1504 NR:ns ## KEGG: Ldb1504 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 78 6 83 83 97 100.0 2e-19 MKVFSVTLILFIFAYIVEQLTNRNSNYWSIIPISVVGLGSYELLRSDSVSDRVKKVINII TVVAAVLLAIILVYVALL >gi|300496104|gb|AEAT01000120.1| GENE 3 2525 - 2848 208 107 aa, chain - ## HITS:1 COG:no KEGG:Ldb1505 NR:ns ## KEGG: Ldb1505 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 107 1 107 206 199 97.0 3e-50 MKKCKRYLTVFFVAMITVTIFLPFSAASVSAKTNLNEAMSLPDKNIEIDKKYWSDERIDQ LADILQKSHPEFSRNYIKALIRDELNDGQIPSVSVFKSQKTISSRSS >gi|300496104|gb|AEAT01000120.1| GENE 4 3034 - 4965 2982 643 aa, chain - ## HITS:1 COG:L0357 KEGG:ns NR:ns ## COG: L0357 COG0441 # Protein_GI_number: 15673893 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Lactococcus lactis # 5 643 4 646 646 796 60.0 0 MSFALTLPDGSKKEFDAAVSVADLASSISTSLAKNALAGKVDGEIKPLDFQLDADHEVAI LTNKDAEGLSVLRATVAFVLEALVKDKYPEIKLGQAEVSEDGFFIETDKEDQIKVTELPD LEKALQKAIKNGEAIEHVQVAKSELAEAFKDDPYKSELLAKEGDVVNAYKLGDFVDFGFS ALLPNTGKIKKFKLLSVAGAYWKGKSSNPMLQRIFGTAFFKEADLEADLKRRAEIKERDH RTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRIIERYIVDKEVAAGYQHVYTPVLMNLDA YKTSGHWAHYREDMFPPMDMGEGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIAELGMM HRYEKSGALSGLQRVREMTLNDGHTFVALDQVQEEFARTLQIIMDVYHDFDINDYYFRLS YRDPKNTDKYFANDEMWERSQSMLKAAMDDMGLDYVEAEGEAAFYGPKLDIQTKTALGND ETMSTIQLDFMLPERFELSYIGADGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTWL APVQAEIIPVNLDAHSDYAKKVRDELVAKGFRAEIDFRNEKLGYKIRESQTQKVPYTLVL GDDEMNAGTVNVRPYGTEEQNSESLAEFMDKLSKDVASYSRED >gi|300496104|gb|AEAT01000120.1| GENE 5 5266 - 6189 1325 307 aa, chain - ## HITS:1 COG:lin1595 KEGG:ns NR:ns ## COG: lin1595 COG1484 # Protein_GI_number: 16800663 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Listeria innocua # 20 306 14 307 307 203 36.0 4e-52 MRAIGDMLSDAAKAAAAKNGQDFSAESFEKMKKQVFADPDVRAFLTAHQDQLTKESVDAS FASLYEYCRQKDSHDKVISGYLPQLFMEGPLIGIRYQASQDKQRRDKEAAAKRRIELIDL PEKLRRVKLADLDMADDRKQALFEVGAFLQAYQSNPHAKGLYLSGDFGVGKTYILAGLAN RVAEMGGRVIFLHMPTFIAGLSSHFGDNSLQTEIQRLAACDVLILDDIGAETLSPWSRDD VLGVILQARMDNDLPTFFSSNFDMKALESHFSATKNADDPVKAARLMQRVRYLAKEVVVY GNNRRLP >gi|300496104|gb|AEAT01000120.1| GENE 6 6200 - 7534 1972 444 aa, chain - ## HITS:1 COG:SA1508 KEGG:ns NR:ns ## COG: SA1508 COG3611 # Protein_GI_number: 15927263 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Staphylococcus aureus N315 # 7 408 12 412 466 91 22.0 4e-18 MYENSNPRLRYVVLNELADQSGQGQVLIKLYQPLIGALGVALYQTLVQDFDPYRSLSASS ALYSLQEDLDCSLRQLWRALHKLEAVGLLKTYVSHNLRLGDILAFKLHAVPEASEFFNTS LLASLLKEKVGGVRFSQLSREFAKQAQVKERQLDNLEEVSASFFEVFRLPENEAINPSED VQKAAEENAGQKTEEAQVNLKQIDWQYLKDRFATYQIPESEIDRQKDEIRSIMELYGLSE EEFINETLPTLHGSYQLDAAAIRKSLNYNYKADHRRKQVIKRQEEKQDRPSVDQQDQQLL DLVKSKSPVNFLDDMKREKGGFTTARERQIVYDLRENVGLEMDLINVLVYTCLNYQPVLT RDLAYRIANDWLQKGITTPEAAIKHLRAGKKQAQSGQKKNYPAYSGSRRLEQGTDWNKKQ FIQPVNISDEDLRKMLQGPDKKDK >gi|300496104|gb|AEAT01000120.1| GENE 7 7538 - 8005 763 155 aa, chain - ## HITS:1 COG:BH3146 KEGG:ns NR:ns ## COG: BH3146 COG1327 # Protein_GI_number: 15615708 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Bacillus halodurans # 1 153 1 153 153 181 56.0 3e-46 MLCPNCHQNASRVIDSRPTDEGRTIRRRRECENCGYRFTTFERVEQSPLLVIKNDGTREA FSREKILNGVAAACQKRPVSSEQLNKLVDNVENRIRAKGVSEIYSKEIGELVMDQLADID DVAYIRFASIYRQFTDMSSFMKTMEDMMDRHSKAK >gi|300496104|gb|AEAT01000120.1| GENE 8 8019 - 8603 605 194 aa, chain - ## HITS:1 COG:BS_ytaG KEGG:ns NR:ns ## COG: BS_ytaG COG0237 # Protein_GI_number: 16079958 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Bacillus subtilis # 1 194 1 197 197 139 39.0 3e-33 MPFYLGLTGGIATGKSTASRILKELGCQVIDSDLIAHQQAEVGQVSWQRILEEFGPDFFN EDRSLNRKKLGQYVFANPKALAKLSEITQGEVLKEVQKQMKDSQASVCVIDVPLLFEAGW QDYFDAVLLIAVPEEVELDRLMKRDSLSEAEAKRRMQAQLPLGEKRLLASYVLENTGTIE ELRDKLSNLLKTIA Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:41:32 2011 Seq name: gi|300496102|gb|AEAT01000121.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00244, whole genome shotgun sequence Length of sequence - 1064 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 340 - 966 202 ## LDBND_1602 transposase orf_b Predicted protein(s) >gi|300496102|gb|AEAT01000121.1| GENE 1 340 - 966 202 208 aa, chain - ## HITS:1 COG:no KEGG:LDBND_1602 NR:ns ## KEGG: LDBND_1602 # Name: not_defined # Def: transposase orf_b # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 208 309 516 516 358 100.0 5e-98 MSLRWQLNQQLEQLEKADKPLSKTALRKKRKLLGKLKNLEQNNIGRKSYDKSYRSAQETV RSFISCAINRMIEKEHPAVIAKEDLTFVKEKGVKSDNSRLARKMRKRLNSWTKGQLDERI VYLSSKNSIETHDVNPAYTSQYCPICGQHFEERYGSHHELTRCKKCGEMNANIAAAKNIL SRLTDEEITLYTPYKRVKEILASRIKEA Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:41:37 2011 Seq name: gi|300496099|gb|AEAT01000122.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00077, whole genome shotgun sequence Length of sequence - 1586 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 43 - 876 803 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 989 - 1048 5.8 + Prom 931 - 990 8.3 2 2 Tu 1 . + CDS 1042 - 1548 887 ## LDBND_0055 hypothetical protein Predicted protein(s) >gi|300496099|gb|AEAT01000122.1| GENE 1 43 - 876 803 277 aa, chain - ## HITS:1 COG:SP0742 KEGG:ns NR:ns ## COG: SP0742 COG1307 # Protein_GI_number: 15900637 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 277 1 280 281 175 38.0 9e-44 MPIKIVTDSGANMTAGNLGSCQLEVAALSLIQGDKTWLDDASFDQAEFNQRAKDGIAASS SCPSISAWLDAYAGGSEIYVVTISSVLSGSYNSAVQAAKIYQEEYPDALIHVFDSKSAGP AQFLAAEKIAELKEKGMQFPDLVEAVSDYLENHVRIFFALKSMTNLANNGRVSPAVAKIA GLLKIWVYGWAEEGEIKPLGKARGEKKTLAALLRTLEEKGYRGGRVKIDHADNFDSAAEL HDLIRKKRPEARVDLGTCRALCSFYAEAGGLMIGVEI >gi|300496099|gb|AEAT01000122.1| GENE 2 1042 - 1548 887 168 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0055 NR:ns ## KEGG: LDBND_0055 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 168 1 168 168 305 100.0 4e-82 MEKIARSLAGLHLPRYQELPQMGLYLEQTATYINEALAPLENVHLTSSMVSNYVKHDLIA SPKKKLYSRQQIAELVFIAVSKNVLSLADLCKALKLQRSSYDTETAYNYMVDELENVLAY VFGFKGELTDVGQEHGEYKTMLRNVIMTVSYKVYLDKYFAQFTGQEEE Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:41:49 2011 Seq name: gi|300496070|gb|AEAT01000123.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00222, whole genome shotgun sequence Length of sequence - 33898 bp Number of predicted genes - 26, with homology - 26 Number of transcription units - 14, operones - 8 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 79 - 1704 2654 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 1778 - 1837 6.5 + Prom 1784 - 1843 5.0 2 2 Op 1 . + CDS 1956 - 2441 832 ## LDBND_0198 hypothetical protein + Term 2446 - 2478 4.6 3 2 Op 2 . + CDS 2499 - 3899 2156 ## Ldb0208 hypothetical protein + Term 3911 - 3951 1.1 + Prom 3902 - 3961 3.0 4 3 Op 1 1/0.000 + CDS 3996 - 5945 3148 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) 5 3 Op 2 . + CDS 5979 - 7238 1884 ## COG3919 Predicted ATP-grasp enzyme + Term 7254 - 7287 3.1 6 4 Op 1 12/0.000 + CDS 7604 - 9814 3485 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase + Term 9834 - 9868 6.2 7 4 Op 2 . + CDS 9886 - 10608 1049 ## COG0602 Organic radical activating enzymes 8 4 Op 3 . + CDS 10628 - 11185 840 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 9 4 Op 4 1/0.000 + CDS 11185 - 12501 1508 ## COG2461 Uncharacterized conserved protein + Term 12516 - 12559 5.0 10 4 Op 5 . + CDS 12601 - 13821 1837 ## COG0477 Permeases of the major facilitator superfamily + Prom 13827 - 13886 5.3 11 5 Op 1 . + CDS 13908 - 14246 610 ## COG4545 Glutaredoxin-related protein 12 5 Op 2 . + CDS 14271 - 16223 2896 ## COG3590 Predicted metalloendopeptidase + Term 16255 - 16290 4.0 - Term 16471 - 16515 2.4 13 6 Tu 1 . - CDS 16557 - 18578 3385 ## COG3158 K+ transporter - Prom 18620 - 18679 8.0 - Term 18651 - 18684 1.5 14 7 Tu 1 . - CDS 18728 - 19141 542 ## LDBND_0210 hypothetical protein - Prom 19179 - 19238 6.0 - Term 19201 - 19246 9.2 15 8 Tu 1 . - CDS 19258 - 20205 1546 ## Ldb0221 hypothetical protein - Prom 20225 - 20284 4.5 + Prom 20174 - 20233 4.6 16 9 Op 1 . + CDS 20419 - 20628 472 ## Ldb0222 hypothetical protein 17 9 Op 2 . + CDS 20688 - 20924 431 ## LDBND_0214 small conserved protein + Term 20928 - 20965 -0.5 + Prom 21056 - 21115 6.9 18 10 Op 1 . + CDS 21194 - 22399 2115 ## COG1705 Muramidase (flagellum-specific) 19 10 Op 2 . + CDS 22420 - 23958 2367 ## COG5632 N-acetylmuramoyl-L-alanine amidase + Term 23964 - 24016 12.4 + Prom 23980 - 24039 7.2 20 11 Tu 1 . + CDS 24070 - 25908 2867 ## COG0475 Kef-type K+ transport systems, membrane components + Term 25929 - 25965 2.2 - Term 25913 - 25958 7.1 21 12 Op 1 . - CDS 26011 - 26976 1406 ## COG0673 Predicted dehydrogenases and related proteins 22 12 Op 2 . - CDS 27022 - 27771 1075 ## LDBND_0219 hypothetical protein - Prom 27791 - 27850 5.7 + Prom 27742 - 27801 7.5 23 13 Tu 1 . + CDS 27935 - 28624 991 ## COG0588 Phosphoglycerate mutase 1 + Term 28645 - 28674 2.1 + Prom 28787 - 28846 4.8 24 14 Op 1 . + CDS 28876 - 30159 2011 ## COG1316 Transcriptional regulator 25 14 Op 2 . + CDS 30177 - 30779 757 ## COG0344 Predicted membrane protein 26 14 Op 3 . + CDS 30858 - 33860 4591 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Predicted protein(s) >gi|300496070|gb|AEAT01000123.1| GENE 1 79 - 1704 2654 541 aa, chain - ## HITS:1 COG:SA0849 KEGG:ns NR:ns ## COG: SA0849 COG4166 # Protein_GI_number: 15926579 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 12 540 10 538 551 339 39.0 8e-93 MRSKKLLASSAVILASAATLAACGSNSSQSSAKKQTLTWMNTAEMTTLDASKATDQASYE QINNVEEGLYLLGKKAKVQNALATSTKNSADGKTWTFTIRKDAKWSNGDPVTAKDFVYSW RRTIDPKTASEYAYLFSGIKNADAIVSGKKKPAALGIKADGKYKLTVTLEKRIPYFKLLM AFPLFFPQNQKFIEKMGSKYATSSKYMVYNGPFKQVGWTGSNLSWKLVKNPTYWDKKSVK LDTVKFSVQKTPSTDYNLYQSGKLDAAFLDAQATKSLKGKTGYTQRKMSTTQYLSYNLKK HPEFKNKNLRLAISMAINRKELASTLGGAATPATTFDPEGMTTVNGQDYADTVKNAATEK AATYNVKEAKKLYKQALKETGKKKISFTLLGDDDDTAKKAAEFVQSQLENNLGIDVQVQS IPKKTRLTRMMNGNFDVVSTGWNADFSDPISFLDLQTTGASYNYGKWSNKTYDKYVAASK TTSSTSDRFKDLAKAEQVLLAEQGVTPLYHPIEAWMVKPSVKGVIYNGAGANYSFKYAYL K >gi|300496070|gb|AEAT01000123.1| GENE 2 1956 - 2441 832 161 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0198 NR:ns ## KEGG: LDBND_0198 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 161 1 161 161 275 100.0 5e-73 MEKLTTMELADELAEAQDKILNGEAKLDTGRVYQAIDDLGVLNDPISNYFDRTEDEYYET ESDHYLALTNLTGKLGDLHDRILTNHVDGFVDKDEINLTYNHENAYVEDNYVPRTDLHVL VYGLKVIGAVEAIAAADLRNVLSKDAVLSLGLAAHALAENL >gi|300496070|gb|AEAT01000123.1| GENE 3 2499 - 3899 2156 466 aa, chain + ## HITS:1 COG:no KEGG:Ldb0208 NR:ns ## KEGG: Ldb0208 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 466 1 466 466 929 98.0 0 MDLFKYTKGIIDKAVGASKLHAVQKSAGELLDPMQKYLTVGEYHVDARDATPDGRPFTLT VYQDDQGILHQALSPESTDSLAAEYDRKFVPELNRFKAFRNRETGRRYVVEDYLARFASD VKKEIREGDDSVNIGVITDTHFKNVDSLDFYGWNGLMHVKEFSYLDQLDILDLKCHLGDW IDGSDAGLISESELMKLRDSFKSSKVPYLMIKGNHDENDKFDEHHDLKASFPEREFEKIM WPEMYRQRELGYVSRQHGVAWFDQGHVRVISLNTSDIPYILNEKGQKKYDVKLTLGVRED QVQELIEILQQSSGKQVILLSHANPINRKGGNALKYNGRSLHELLVAFNQKEKGRMHSSK DVPAEFRLSNDFDFTNVKDARIIAYFCGHRHVEDQYRINGIQYVLFNCSALMGPNHQLTT KYNKNLNRKMDHQNEFAGYVVNVDLFRRRIKVFGYGAATRRRIFFI >gi|300496070|gb|AEAT01000123.1| GENE 4 3996 - 5945 3148 649 aa, chain + ## HITS:1 COG:L0095 KEGG:ns NR:ns ## COG: L0095 COG0367 # Protein_GI_number: 15674210 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Lactococcus lactis # 1 627 1 618 625 640 49.0 0 MCGIVAFYDPKINDKQAAIGKMMATIQHRGPSSDGMYTNDKVALGFRRLSIIDLRGGSQP IYNEDRSRAIIFNGEIYNFKPLREELIKAGHTFSTKADTEVILHGYEEWGMDGILKRVRG MFAFIIWDDNTQTMYGARDFFGIKPMYYQDVDGHLLVGSELKSFLAFPHFKKELNTEAVK PYLMNQYNDLKETFFKGVYRFQPGHWFEYKDGKMKTHQYWDAEYKDNNLSFEETVKKINE DLKETVDLYRNADVKVGAFLSEGVDSSFLTALLDPDEVFSIGFDDNTYDEASKAKALADI NGWHFYADKVYSEEAMRDFPEMQYHMDEPDANPSIIPLWYLCKLARKHVTVALSGEGADE LFAGYVNYGMHTHNNVIKVFTDKLKKLPKGKRVKLAHKIKKMPNFPGKVHLYTNLAEPSE FYVGQSVIYDMDYPTIFTSKDANAVLQPSYRNKLTVNGNYQEDFKKVKDLDNVKQMQYID LHHFMLNDIEQKADKISMAHSLELRVPYLDVKIAKLANSIPSKYLVNKYDTKYALRKASE QVLPDEWAKRPKLGFPTPIKQWLQEERFYKQVRDLFSEDFVNDIFEQKKILDLLDENYNG DGSHRRQIWAIYTFLVWYKLFFVDYEETVRKYQHVQPEVASLIAQGKLL >gi|300496070|gb|AEAT01000123.1| GENE 5 5979 - 7238 1884 419 aa, chain + ## HITS:1 COG:L93420 KEGG:ns NR:ns ## COG: L93420 COG3919 # Protein_GI_number: 15674209 # Func_class: R General function prediction only # Function: Predicted ATP-grasp enzyme # Organism: Lactococcus lactis # 3 410 6 407 408 431 53.0 1e-120 MAKFTPILLGSDINVYGMARSFNEAYGIKVQAWAATQLAATRYSKIVDVEVHPGFSEDPG FMEVMQEKIKEYQNHEEPVILIACGDGYAELLAKHKQELEGTFVVPYIDYQLLEKLISKE GFYEVCEEYGLPYPKTKIIKLADYQDGSYADVPFAFPVALKPEDPVSWLDVQFEGRKKAF VIKDLAEFKDIVGKIYTNGYKEDLILQDFIPGDDSNMRVLNAYVDKNHQVKMMCLGHPLL EDPTPQSIGNYMAILPAYDEKLYETVQTFLEKINYVGMANFDIKYDARDGQYKFFEINLR QGRSSFYVTLNGYNLAKWYVDDYAEDSLAGQETVYANKLESSHMLWLGVPEKIFKEYAVD NEAKQAALKLIDAGQVGTTVFYDQDSSFKRWLLMKYMFHNYYKRFKTYFQVNKGQYFDK >gi|300496070|gb|AEAT01000123.1| GENE 6 7604 - 9814 3485 736 aa, chain + ## HITS:1 COG:SPy2110 KEGG:ns NR:ns ## COG: SPy2110 COG1328 # Protein_GI_number: 15675860 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Streptococcus pyogenes M1 GAS # 19 718 16 723 732 957 64.0 0 MLKPAAETVSLNFANAPKKFIKRDGAPFKFEQFKLEMVLDELGLEDSEIKAAVLSKVYAK LTTYTVDAVQVHAAFRASLNELGYLNEAKEYEAKRQEDEADWRAETDTKQRLAKLVDKDP SIVHENANKDSDVFATQRDLTAGTVGKTVGLTLMPQHIAKAHLRGDIHWHDLDYTPLSPM SNCCLIDFDYMLNHGFKIGNAFVEVPNSIRVATSQVAQIITSVASSQYGGCSFDRCDEVL APFAEKDYKKHLEEGREFIDDEDKVKAFAKKRTQKDIYDAMQSLEYEINTMFSSQGQTPF TTLGFGLGTNWIEREIQKDILQVRIEGLGREHRTAIFPKLVFSLKKGLNLHPGDPNYDIK KLALECATKRMYPDVLSYDKLIDITGSFKAPMGCRSFLQGWKDEQGQEVNSGRMNLGVVT LNLPRIAMESQGDMDRFWEIFNDRLELGRQACEYKAKKVTEAKPVNAPTLYEYGAFGQGA GDDGDVNDFFKNGRATVSLGYIGLYEVGTVFYGPDWEKDPEAKAFTLEVVKKMHDACAKW EKEDPNHYHYSVYSTPSESLTDRFCRLDTEKFGKVKDITDKEYYTNSFHYDVRKHPTPFE KLDFEKDYPYYAAGGFIHYCEYPNLKQNPAALEAVWDWAYDRVGYLGTNTPIDKCYECGF AGEFKSTAKGFECPQCGNHNPETCDCVKRTCGYLGNPLKRPMVHGRHEEIAHRAKHMSLG MVSEEASLEKQKNSQY >gi|300496070|gb|AEAT01000123.1| GENE 7 9886 - 10608 1049 240 aa, chain + ## HITS:1 COG:lin0306 KEGG:ns NR:ns ## COG: lin0306 COG0602 # Protein_GI_number: 16799383 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Listeria innocua # 55 230 3 178 183 257 67.0 1e-68 MPEKDKNQQEGPDVRDNLIRISVGGETVFVDANQYKAKNAGQTAKPRKMKRQPKNPKPGE WISEDYSKHKIADYKPFNFVDGEGVRCSLYVSGCLFDCPGCYNLAAQNFNYGRPYTQELE DQIIADIGQSYVQGLTLLGGEPFLNTWVCNRIIDRVRAEYGHSKDIWSWSGYTWEELLKE TPDKVEMLKKLDILVDGRFMDNLKDLTLQFRGSSNQRIIDVQKSLKTPDLHPVIWDKLQR >gi|300496070|gb|AEAT01000123.1| GENE 8 10628 - 11185 840 185 aa, chain + ## HITS:1 COG:DR2165 KEGG:ns NR:ns ## COG: DR2165 COG2151 # Protein_GI_number: 15807159 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Deinococcus radiodurans # 11 102 51 142 149 100 50.0 2e-21 MNEEKRALVNQVIGQLQTVIDPELLVNVVDLGLIYGVDIDDEGNCLVTMTLTTAGCPLND YLNREIRQAVGQLAAIKQVDIKLVWYPVWTPDRLSEQAKKQLGIKEEPAPAAKEINLHQP IKTFADQYPEFTEDMAEIGFNRIKIPGMLDTVGRLMTLPMGCRAMGFDLEEVKEKLRLKG YEVTE >gi|300496070|gb|AEAT01000123.1| GENE 9 11185 - 12501 1508 438 aa, chain + ## HITS:1 COG:L52568 KEGG:ns NR:ns ## COG: L52568 COG2461 # Protein_GI_number: 15673592 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 7 436 11 443 490 307 40.0 2e-83 MTMSLKERQEKLLEILRLLRDKGDFDQAKAMFNEAFSSVSVKEITEAERALIAGGLNPQE IQNLCTVHAEVFRGSIGEQEAGEAFARPGHPVQTLKQENVVLTSLVNDALLPDLTKYEAK PAPELLAKIKQELADLAQVDKHYTRKEISMFPLMTKYGITAPPQVMWGVDDDIRAWIKEA RQAAETGEAELLAKKVKQAAKEVTEMIFKEEAIMLPLLTEVATPADWLRVKEDEPRVGYC LIPNPPAWRPSAAELAEKKAADPAAIAKWNDQIGAFAGQLGGNEAENYQKLVEVEQAEEK ARPALTDSFIEFAEGSLSYEQLSAVLDLLPLDLVFVDKDDVIRYFGGSCGFYPHSKNDLG MNLFSIHMPKSVPKVKAIVDDLRSGRKDKHAFWFEVRGRFVYIQYLAVRNKAGEYLGVLE VLQDITDLRALQGKKKEL >gi|300496070|gb|AEAT01000123.1| GENE 10 12601 - 13821 1837 406 aa, chain + ## HITS:1 COG:SA1580 KEGG:ns NR:ns ## COG: SA1580 COG0477 # Protein_GI_number: 15927336 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 17 378 9 365 393 197 33.0 2e-50 MKTKHGQSQLPEIALPWLVVAELATWIGASFIWPLTSVYLNKRLGISLSVIGIVLFCNCA ANMLGSTISGRLFDRLNPYPLITGGMLLDALVLLAMAFFHGWPVYWVWLVCTGFLGGWNG ALVNSIATSLRKYPGRYVFNILYFSQNLGVVIGTLIVGYLYDYSIELLFTIASCLFLIGT LVAFCKFKPIVAYHARRQEQKKTGQTPLKAEKMPKANFWMTMGFFITLGVTWLMYMNWES NLSVYMVSLGIPFHLYSTLWTINAGIIVVVQLILARFPRIFKSIYQQIYFGIFMFAVSWL TLIFAKTYPGFVLSMSILTLGESTAFSAIPAYVNDMSPYSSKGKYQGMTLVASGVGRAFG PLFGGTLIDLLGYKTMFVVASCGILLCLLALLPLRTKLKDQVQFFK >gi|300496070|gb|AEAT01000123.1| GENE 11 13908 - 14246 610 112 aa, chain + ## HITS:1 COG:FN1077 KEGG:ns NR:ns ## COG: FN1077 COG4545 # Protein_GI_number: 19704412 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin-related protein # Organism: Fusobacterium nucleatum # 1 73 1 73 83 66 41.0 1e-11 MLKVYGTKICPDCIACEASFKKYGIGYEFVNIFATMPDFKEFLRLRDASPAFAHAKEQGS AGIPACVKEDGEIFTDWEGFLKDQGLEPIWPEAADQAKAEIEAQCDLRQHNC >gi|300496070|gb|AEAT01000123.1| GENE 12 14271 - 16223 2896 650 aa, chain + ## HITS:1 COG:L49741 KEGG:ns NR:ns ## COG: L49741 COG3590 # Protein_GI_number: 15673785 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Lactococcus lactis # 22 650 3 627 627 487 42.0 1e-137 MNNKFAVRGGSGDTTVVDTTARPQDNLYLAVNSDYLDQLEIPADRSRMGSFDQIAENVEK TLMADFAAFASGEKEVPNLPNLAKAVELYKLAKDFDKRNADGAEPIQADLKKLEGLNSWN DLQGAAAALATEGFDLPFSFSVDADMKNTKVNTVYFGGPHIFLPDTTTYESPDAEKLLGV LKEQTLKLFQMAGVSEEKAAEYVDGALAYDQRLAKVVKSSEEWADYPAMYNPISLADFKS KFTSFDMGQFLAGFLGEEPEVLINTEPRYLDQAEGLLNEASFSEIKGWMLVKFINDVASS LSQEFREAAFPFSQALTGQPQLASGIKQAYRIANSTFSEIVGVYYGQTYFGAAAKEDVLG MIKRMLKVYEDRLAKNDWLSQATKDKAITKLQALILKVGYPDKIEDIYNRLQVTPAEEGG SLYSNLQAASQESIKYSLEKLHQPVDRTVWLMPGNLVNACYDPQRNDITFPAAILQAPFY SADQSRAANYGGIGAVIAHEVSHAFDNNGAQFDEFGNMKNWWTEADYKEFADRTKAEIAI FDGLKFGPTTLNGKQIVSENIADQGGLTAAMTACKEEGQGLEDFYANWARVWAQKSLEAA IKMIVSVDVHAPGPLRANVQAQCQDEFYETFDVKPGDGMYLAPEDRVKIW >gi|300496070|gb|AEAT01000123.1| GENE 13 16557 - 18578 3385 673 aa, chain - ## HITS:1 COG:SPy1414 KEGG:ns NR:ns ## COG: SPy1414 COG3158 # Protein_GI_number: 15675333 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Streptococcus pyogenes M1 GAS # 7 670 9 665 666 658 50.0 0 MEVENKLNRTTAAGLLIAIGIVYGDIGTSPLYVMKSVIDGNGGLNTVSRDLIIGTISAVL WTVTMLTTVQNVIIALKATNHGEGGIFALYTLIRHKAAWLVWPALIGGAAILADGTLTPA VTVTTAIEGLKGLEFGKGNVPVSTQTTVLVITIIILLVLFSIQRMGTSIIGKAFGPVMLV WFAFLGVMGLINIGGNWWILQALNPYYAIKLLFSPYNKAGLAILGSIFLATTGAEALYAD VGHVGKGNIIGSWPFVFVCLSLNYLGQGVWILNNTNLHSATEINPFYAMIPENIRLASIV LATLAAIIASQALISGSFTLVAESINLKFLPRMNILYPSDERGQIYIPAINKMLGITTIA LVLFFRTSAHMEAAYGLAITITMLMTTILRYEWMVLKQGHNPANLLFVIFFSTINILFMG SSLSKFTHGGYVSLLITLLIVSVMVVWYFGNKVRDQNEAVNAYVRLDEYTDMLTDLSHDD NYPTYADNLVYMANVKYNKFIKREVLYSILDKRPKRARAYWFVTVNVTNEPFTAEYAVNT FGTKNVINIQLYLGFKKQTSVNVYLRQIVHDLIKDNTIEPQPQEYTTTPGRDVGDFKFVI VNDVISPSTTLSSYKKWLVKARVQLQNLSPNPAQWFGLEFADTVIERVPLILGKQEPARI KRVAPVDYSKTPC >gi|300496070|gb|AEAT01000123.1| GENE 14 18728 - 19141 542 137 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0210 NR:ns ## KEGG: LDBND_0210 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 137 1 137 137 254 100.0 7e-67 MAEEEKKIRSNEDMFKIVMPEPERVTMPAREVADQPAYLVNFANFYVSSFERDDLEIISE FDEDHNMVNINHYLLLNQPFSRKNLVKHVLIDHAHNFQAILDKMTAETGVDPEAMTTYED WSNWYEGVRAKIESSLS >gi|300496070|gb|AEAT01000123.1| GENE 15 19258 - 20205 1546 315 aa, chain - ## HITS:1 COG:no KEGG:Ldb0221 NR:ns ## KEGG: Ldb0221 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 315 1 315 315 361 98.0 2e-98 MKKSTIWSIVVVAVLALGGAGAYFYSSQQKQSQEQTASSSYSSHMQAGKEAVKAKKYSQA ADEFDQAYQAKATAQAKNYQAQAENLADSVKLAKTTVKYASALNLAQKAQEQNGGYSVMT SQAKKLVKQLKAVKDNYDSEIKPLLNKAAKAMEDGDYDSAVSTYSSILDLPYINGAYYAK VRSNVKDLLKEAKSKQEDSSSSSESSSSSSSDSSSKSSSKESSSSSSSAASSSASSSSNQ AEGSGTSNNDKVGGSTVTSRDVQQIRTQLDNLGESTAGWSPQDLINLFNYAYQQGHTTID SITKDDVEGYLKSGK >gi|300496070|gb|AEAT01000123.1| GENE 16 20419 - 20628 472 69 aa, chain + ## HITS:1 COG:no KEGG:Ldb0222 NR:ns ## KEGG: Ldb0222 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 69 1 69 69 105 98.0 4e-22 MNFTLADQSIQYTFKAEKYDKGQMQRSLQNVKLDASPESLVKVGQAISKLQSDELAALTL VQKHNLTLA >gi|300496070|gb|AEAT01000123.1| GENE 17 20688 - 20924 431 78 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0214 NR:ns ## KEGG: LDBND_0214 # Name: not_defined # Def: small conserved protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 78 1 78 78 129 100.0 3e-29 MTTTTELQLTFKSSAGKKKSLNLPYAVKGLSADVVREAAAAIAGEGVFVKEGEVLYAEPL AANYIERTVTGVFDDSNH >gi|300496070|gb|AEAT01000123.1| GENE 18 21194 - 22399 2115 401 aa, chain + ## HITS:1 COG:lin2838_1 KEGG:ns NR:ns ## COG: lin2838_1 COG1705 # Protein_GI_number: 16801898 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 16 195 131 306 340 95 40.0 1e-19 MKRRFLTGLATAAMLTSVAVPVTNNMFLSNQAVEASATSDAFLSKVSPQAQKTSKKYGVY ASLILAQSALESGWGTSTLSTQANNFFGMKAANTWTGATYNVKTAEQDSKGKTYYITAAF RKYSSYQASFDDYGLKMRTTLGNYGSLRYSKTWLENASSASAAAKAIKAAGYATDKNYAS KLINHITSYNLTKYDPVYSGTNYTAKVAKSGATYLYPTDHSVSPKKSYVTAGQTVTVTKT YTYYNGKKRMYLKGLGWINGEDLNTGSSQAPSADTSATVSGQMKILMHSAAIYTSTGAKS SVKSVKAGKSMMTYGSVTINGAKYYRINSASADQFIKASNFDGSPRKLKHNAYLYNSKGK RVGKSKWLKGSSHTVYGGSVKIKHKQYYIVGLNQYVKKGNF >gi|300496070|gb|AEAT01000123.1| GENE 19 22420 - 23958 2367 512 aa, chain + ## HITS:1 COG:lin2703 KEGG:ns NR:ns ## COG: lin2703 COG5632 # Protein_GI_number: 16801764 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Listeria innocua # 72 238 109 273 770 145 47.0 2e-34 MRFNKILTVAAVASLGLTFVFSQGKAAEASINSEAKTKTYSGTKSLETLLKAAGLTYNQF NSVANGNKYGSRFGYRNGVGKPEGVVVHETATPGATAWDEGRYFNNNWMTAYTYVHAVVD NNQTIQLMSTDYGTWGAGPIANVRYIQIELCEVSTRSQFVQSVANDAYYIASLLHQYNLT PSRASKSGTGTIWSHNEVSQYLGGTDHGDPDSYFAKWGYSMSDFYSLITYYYNKLGTSSN SGSSSSSQAPATQPVSTKTVKLMRNSYSYDAYGKKLAVKALKAGSSLKVYGSAVTIGSSK YYKYADGKYVKSGNIDGTSRTLTGNSWTYTISGSREWSTAKLLKGSKVTTYGSQVKIKGK AYYMTGFTSNNVAKYVKAVNFQPKPVEVSTSKRLMRNSYSYSAAGKKLPDSMLKAGQYLK VYGSAVTIGKAKYYKYANGKYVKAGNIDGTSRPLKHNAYVYTVKGTRNWSEAKRLKGSTV TTYGSRVKLAGKYYYMVGFSGQTALYLKAGNF >gi|300496070|gb|AEAT01000123.1| GENE 20 24070 - 25908 2867 612 aa, chain + ## HITS:1 COG:SA0868_1 KEGG:ns NR:ns ## COG: SA0868_1 COG0475 # Protein_GI_number: 15926598 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Staphylococcus aureus N315 # 1 393 1 396 399 268 43.0 3e-71 MEGLSLFLTVFLALVIPIVMARLRVTTVPTAVAEIIVGILMGKSCLNLITQTSQLTFLSN LGVIVLMFLSGMEIDFDLLSPKKHSRARKSESGKQVKPMVVAAFAFGGVAVASVLLALGM KALGLFNDVALASIIFMTVALGVVIATLKEKEILGRPIGQTILLTAVMGEVIPLLLLTIY STVNGGDARKLWLIILLFVAAIILLRRFKRPYLWFAKVTKATTQLDVRLAFFLIFALVTV AEQVGAENILGAFLAGVVMKLLEPTQATKDKLTSIGYGFFIPIFFIRTGVNLNLKLLFAN PQALKLLPVLVICFFLAKLPVTLTYMRAFNKRNAFAGGFLTATTITIVLPTLQVARKLNA ITATQSSAFILAAVIVCIACPIVFNSTFALTPEDKIKEKVVIFGLNAVTMTVYQDLHDSW YSVQVLTCRKEKYDTYKSKVKNLKLLPDRKLDTLEAAGAFDTDIFVATFTDDQANLEVGR AAKQAGVKRVIVSQGKVVADTVDQLREEGIELFAFNNLHGAMLRALIESPAVYRIITDTN NALYDVVVRNSAYTGRQLMDWDFVDQITVSRIRRGDKWISPHGSTVIEPGDELIYSGPWR EADRIHQLLSRE >gi|300496070|gb|AEAT01000123.1| GENE 21 26011 - 26976 1406 321 aa, chain - ## HITS:1 COG:SPy0441 KEGG:ns NR:ns ## COG: SPy0441 COG0673 # Protein_GI_number: 15674565 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Streptococcus pyogenes M1 GAS # 1 316 1 316 319 247 41.0 3e-65 MQLGIIGSGKIVRDFLTALPLPGLKLAAIATTKRSAATGQELADQYGISRVYDDYLEMLK DDQVDTVYVATPSSMHYQMCLDSLAAGKNVICEKPFVLTAEEALELKQLADQKGCLITEA ITNRYLPAFKSLASDLQLLGPVHVVSLNYTQYSSRYDRFLAGDIAPAFNPRLGGGALLDL NVYNIHLAVSLFGAPLDVHYFPNLQKGVDTSGVLVLAYDDKQASLTAAKDSQAFTHNPSL IAGEKGAISFIGSPGDIRSYRLETADGQTAKNFDPDLHRMIPEFTEFIRIFDQKDKTAAD RAFAHSLQVIAVLEAARDCMP >gi|300496070|gb|AEAT01000123.1| GENE 22 27022 - 27771 1075 249 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0219 NR:ns ## KEGG: LDBND_0219 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 249 1 249 249 367 97.0 1e-100 MPSKKKKIHLLTLLALASLFLAACTKPSPQSLVKKAQQSKIANFQLKIDEHYYTGNKPVR FYGQINYQRSPFVMQADLTQSGDQNVKMWVGQHYAYVKYYKDQQEAWYKAKLSQFTTISH FQQLVKDMDTLTLSQKSAKLFSVSRTKNGWRLSYTGKSQRLWQEITETNGLASLSSDSQM AKAKLQQIKMTIDFSQKKQLTGLAIYAKYKVKGQTSSTKLAMLKVNQQKKLAIPKTVSKN SVDVSRLNK >gi|300496070|gb|AEAT01000123.1| GENE 23 27935 - 28624 991 229 aa, chain + ## HITS:1 COG:SPy1429 KEGG:ns NR:ns ## COG: SPy1429 COG0588 # Protein_GI_number: 15675343 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Streptococcus pyogenes M1 GAS # 1 225 1 225 231 312 66.0 4e-85 MSKLVLIRHGQSEWNLSNQFTGWVDVNLSDKGVEEAKKAGRLIKEAGLEFDQAYTSVLTR AIKTLHFALEESGQLWVPETKSWRLNERHYGALQGLNKAETAEKYGDEQVHIWRRSYDVL PPVLADDSEFSQANDRRYANLDPHIVPKAENLKVTLDRVMPFWEDHIAPDLLAGKNVIIA AHGNSLRALTKYIENISDEDIMDVEMKTGEPVVYTFDDKLNVVSKEKLD >gi|300496070|gb|AEAT01000123.1| GENE 24 28876 - 30159 2011 427 aa, chain + ## HITS:1 COG:SP1942 KEGG:ns NR:ns ## COG: SP1942 COG1316 # Protein_GI_number: 15901766 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 28 330 5 315 338 191 36.0 3e-48 MKKEDKLGIPETRQHARKRKHKQIRNWIIGILAVVCAIAAGVGLYAAHLYKTAEQAANKA YDSENAVKTTYGEFNGKKPFAVMLLGTDTGALDRTEKRGNTDTIIVVVVNPKKKNYTMIS IPRDTMADMVGDDSNDVQKINAAYSIGGAKMAMKTVSNLLNIPVKYYALVNMGGLMKLVD YVGGIYVTPPLTFTYSGFPFKKRVRQHLNGQAALAYSRMRYDDPQGDYGRQKRQREVITK LVQKLATADSLTNFSKIANNLSSNVKTNLSFQALKSILANYSDCTSSSDSDYLHGYSAYV NDAAYQIAPTSELQRISNKIRKLLGLKTATVSNRETELNTLNETAGFKFGSGETQNYTIY DPGTTADSVKSGKKSSKSSSSAKSSSQTSSSTDYSGNTAYSGSTNYDTTYSYSYNYNYNT NPFSGGY >gi|300496070|gb|AEAT01000123.1| GENE 25 30177 - 30779 757 200 aa, chain + ## HITS:1 COG:PA0581 KEGG:ns NR:ns ## COG: PA0581 COG0344 # Protein_GI_number: 15595778 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Pseudomonas aeruginosa # 1 181 4 184 189 82 32.0 5e-16 MAVIIGYLFGNFISAMFVGKYYLHKDPTKYGSGNPGTANMGAVFGKKAGILTCIGDLLKT LLAICLVYAIYHQHLLTAYTGLGVVLGHCFPVFNHFKGGKAVAVTAMVTVLYDWRAGLIT LLIALVLTAIMQNLTIPPLVFMLSFSIYQLTKSLEPGLVFLIMTAVMAFKFRYDIRDFFT GHGKRVDILYTIKKKLGILK >gi|300496070|gb|AEAT01000123.1| GENE 26 30858 - 33860 4591 1000 aa, chain + ## HITS:1 COG:SPy0793 KEGG:ns NR:ns ## COG: SPy0793 COG1368 # Protein_GI_number: 15674836 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Streptococcus pyogenes M1 GAS # 415 1000 267 824 824 208 30.0 4e-53 MSEQTQSRKIHNLLKYGFLLLAALVLLLQMFNFKSSMLKSSITYLRHLPPIVESATYWFI PMVFGAVYSKRKLRFNEGFRAWAIMEVTLLAYYLVFFISKPWHLNVWRFWGILFPILTST SVLMTGLVFGLLVQPVIYDWQEKFSKKQSLIILIALTLLGFTLSAGTYEMNYSIYGLYLA LPFAWGMFLGKVDFSIKQTAIFIVAGILSLGLVIVGVAGFNAVYWSQIMSWRANPSSWNY QFLLNVTSPFIFIIALAAFAFARPAIKALEVKDLDFLVPLIIFMQAPDANSFMSSFKYGT GSRQLNRMITILIMLVIAIAWHWLIERYLWRFKPVKRINRFLYESKSFGAAAEGAFNRLW GWMKYHHHRTNLLTWTFFFILSFASFLVESDNMRIQITTASNVNAVVWLVGTKLGALILT TIFIDAFFTILYFVTTRYWVSLITTSTVVIAWAVANKIKLDLRGEPIYPSELSEVTNADS LLSMIGGQKTLIMILLALAAVIALMVFCEVKFKVKKRGNWKRRGMWALASLALFMTPKWF NHQGSAIYRLNRAFDNKQSFRNPERDIQINGPILNFLNYIDLQIMDKPSNYSKSQIQKLY EKYQKVADQINKTRTNDLSKQTVIFNLSESFIDPYTFPTIKFAKGTKDPISYIHSLKKTT TYGSMLSAGYGGGTANMEWESLTGFNMGSFSTTLTPYVQVVPQYQYYPTIGANSNYSSAV HPFIGTYYSRIEDYKRFKFNKFVYLGSKYKIVDQKKLGTSSYNSDFTTYANGLRQINSRK GGQFINLISIQNHMPYNNWYPKNYYAGKISGDLFDDGSIRTQVATYIMGTHYTDQAVKKF IKQIDKIKKPITLVFYGDHYPSIVSQSYTSKYPVQMHSTRYFIYSNKYARQHGAKAKLTS KTNYVNTSDFIAMMLEQTNSKVTAYQALLTEVHKKLPALTISYSDDTGFTLVDQKGKEVD PKTLTSSQQALLKDYEMIQYDMTAGSAYALKIKGFYTMKK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:42:18 2011 Seq name: gi|300496066|gb|AEAT01000124.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00054, whole genome shotgun sequence Length of sequence - 3107 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 447 549 ## COG0475 Kef-type K+ transport systems, membrane components - Prom 486 - 545 3.1 - Term 475 - 532 3.4 2 2 Op 1 1/0.000 - CDS 609 - 2423 2665 ## COG2217 Cation transport ATPase - Prom 2479 - 2538 7.5 - Term 2435 - 2474 -1.0 3 2 Op 2 . - CDS 2557 - 3054 817 ## COG0517 FOG: CBS domain Predicted protein(s) >gi|300496066|gb|AEAT01000124.1| GENE 1 3 - 447 549 148 aa, chain - ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 1 148 1 148 379 112 50.0 2e-25 MEFIGQLILVLLMTTLLGQVFARFNWPPVIGQLLSGILLGPALLGWIHPNETMTLFSDIG VIMLMFLAGMESDLDLLKKYFKISFTVATVGVILPILFIGGASLLFGMQFLEALFIGIIF AATSVSISVEVLRATGKLQTKAGTAILG >gi|300496066|gb|AEAT01000124.1| GENE 2 609 - 2423 2665 604 aa, chain - ## HITS:1 COG:L96595 KEGG:ns NR:ns ## COG: L96595 COG2217 # Protein_GI_number: 15672077 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 592 1 590 593 454 42.0 1e-127 MKRQWKFIVVLVLGAIGLITDNVLHIPGIAEVLFDIAGVYVSISLAREMFGDLKEGHWGI DVLALIAIISMMITRDYWAEWMILVMSTGGESLEEYATGQANRELRALLDKNPQVASKLV DGKVVEVKVDDLQIGDQVLIKPGQQVPVDGTIIEGSSTFDQSSLTGESVPVDKTVGDDLM SGSLNGETAVTMEVKKLAKDSEYQTIVELVKSSAAQPAKFVKMADRYAVPFTIISLIIGI TAWVTTGNFTRFAEVMVVASPCPLLIAAPVALVAGMSSMSKHHIIVKSGPTLEQLAKAKT FAFDKTGTLTQNQLVIQDVLPENGFDKETIQSYAASLEQQSDHIIAKSLVQGTDKNLIQA VSNLQESTGNGVSGTVDGKYVMVGKLSYVAPDANVNKAKTTAVYVSVDGKYAGCITFKDQ LRPETPRTLARLRKQGAKHIMMLTGDNKDVAQAIADAAGVDDVRASLLPAQKIEAIKNVA PENRPVVMTGDGINDAPSLTAADVGIAMGAKGASAASESADAVIMVNDLSKINDAVAIAK HTMKVAKIDIITAIVVVIILELVAFTGLIPAFWGAVLQEVVDMITISLALLAKTEPKNPK QTGL >gi|300496066|gb|AEAT01000124.1| GENE 3 2557 - 3054 817 165 aa, chain - ## HITS:1 COG:lin1008 KEGG:ns NR:ns ## COG: lin1008 COG0517 # Protein_GI_number: 16800077 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 144 1 143 150 91 40.0 6e-19 MISAAIQRVLAEKSGSFLIPASKIAIVKEDNPLYHAFLILTKVKYAKIPVLNKKGQITGL LSLAMITDKMLDLDGISVKPLNKYKVKDVMETDFVSINFTKKDIETQLHLLVDNNFLPVV DDQGVFQGMITRREWVKAFNYLAHTFDDHYVTIDKKQVLKLEAKN Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:42:24 2011 Seq name: gi|300496046|gb|AEAT01000125.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00025, whole genome shotgun sequence Length of sequence - 19851 bp Number of predicted genes - 18, with homology - 18 Number of transcription units - 9, operones - 6 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 177 - 236 11.0 1 1 Op 1 . + CDS 417 - 1811 408 ## PROTEIN SUPPORTED gi|148544941|ref|YP_001272311.1| 50S ribosomal protein L29P + Term 1859 - 1892 2.0 + Prom 1886 - 1945 5.6 2 1 Op 2 . + CDS 1972 - 2475 601 ## COG4720 Predicted membrane protein + Term 2518 - 2547 2.1 - Term 2488 - 2548 4.6 3 2 Op 1 . - CDS 2567 - 2959 673 ## COG2199 FOG: GGDEF domain 4 2 Op 2 . - CDS 3068 - 3241 253 ## gi|300812962|ref|ZP_07093350.1| hypothetical protein HMPREF9264_0455 - Prom 3401 - 3460 8.3 + Prom 3381 - 3440 4.3 5 3 Op 1 . + CDS 3485 - 4687 799 ## COG0477 Permeases of the major facilitator superfamily 6 3 Op 2 . + CDS 4707 - 5774 818 ## LDBND_1591 hypothetical protein 7 3 Op 3 . + CDS 5789 - 6970 682 ## LDBND_1589 biotin carboxylase 8 3 Op 4 . + CDS 6967 - 8187 573 ## LDBND_1588 biotin carboxylase + Term 8191 - 8233 13.5 - Term 8171 - 8227 16.4 9 4 Op 1 . - CDS 8228 - 8752 477 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 8783 - 8842 5.3 - Term 8804 - 8851 11.2 10 4 Op 2 . - CDS 8884 - 10503 2593 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 10539 - 10598 6.1 + Prom 10784 - 10843 5.8 11 5 Op 1 8/0.200 + CDS 10878 - 11246 481 ## COG1725 Predicted transcriptional regulators 12 5 Op 2 . + CDS 11248 - 11946 220 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 13 5 Op 3 . + CDS 11946 - 12782 1252 ## Ldb1686 ABC transporter permease + Term 12797 - 12842 7.0 + Prom 12838 - 12897 4.7 14 6 Tu 1 . + CDS 12927 - 14429 2281 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases + Term 14449 - 14484 6.0 - Term 14426 - 14479 8.2 15 7 Tu 1 . - CDS 14511 - 15536 1332 ## COG2855 Predicted membrane protein - Prom 15596 - 15655 8.5 + Prom 15537 - 15596 10.2 16 8 Tu 1 . + CDS 15655 - 16530 1156 ## COG0583 Transcriptional regulator + Term 16531 - 16577 -0.3 - Term 16522 - 16562 5.1 17 9 Op 1 . - CDS 16576 - 17994 1577 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 18 9 Op 2 . - CDS 18016 - 19623 2816 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 19768 - 19827 5.6 Predicted protein(s) >gi|300496046|gb|AEAT01000125.1| GENE 1 417 - 1811 408 464 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148544941|ref|YP_001272311.1| 50S ribosomal protein L29P [Lactobacillus reuteri DSM 20016] # 50 452 67 466 477 161 28 3e-39 MPKQSTTEVEKSVQTEDEIYHNIDILVNKSHEALAQMDDFSQEDVDKLCQVIEKVGEDNA RYLAQMAVDETGRGKVEDKVTKNTYAAQTIWESMKDMKTVGVIEEDKQEGLMKIAEPIGV IAGVTPVTNPTSTVIFKAMIAMKSKNTIIFGFHPQAQKCCVETAKLIKEATAAAGAPENW IQWIEHPSLTATTALMNNPKVQMVLATGGPGMVKAAYSTGKPALGVGPGNGPSYIEKTAD IEQSVNDIVLSKTFDNGMICASENSVVVDKEVYDQVKEAFLKRHCYFLKADEIKLFEEHF IDPRRGTVAGPMAGKSAVKIAEMCGVTVPADTQVIVAEYSGVGPKYPLSAEKLSPVFTLY KAENSAQAFKICTDLLNYGGRGHTAGIHTQNSKVIRKFAFAMSACRILVNSPAALGGIGG VYNNMMPSLTLGTGSYGANSVSHNITAKDLLNIKTVAMRRKPIL >gi|300496046|gb|AEAT01000125.1| GENE 2 1972 - 2475 601 167 aa, chain + ## HITS:1 COG:PH1832 KEGG:ns NR:ns ## COG: PH1832 COG4720 # Protein_GI_number: 14591582 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Pyrococcus horikoshii # 6 154 43 189 202 63 31.0 2e-10 MQKSWSVKRTAVVAVLMAMNVALSSFSIPVPGGHLYFNDVVIVAAALLLYPSEAFVVGGV GAFLGDFLFYPAPMFVSLFSHGFEALIISYFAHKFAGEQKKVILGIFIGAAVMVTGYTLG RAFIYATPAISLVKFPFECLQAAVGACLGYNLVYHAGIEKQFQHRLR >gi|300496046|gb|AEAT01000125.1| GENE 3 2567 - 2959 673 130 aa, chain - ## HITS:1 COG:AGl3210_2 KEGG:ns NR:ns ## COG: AGl3210_2 COG2199 # Protein_GI_number: 15891723 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 120 47 173 180 72 33.0 2e-13 MMIDIDYFKTFNDKFGHLYGDAVLKKISEALLHVYGIGHCYRYGGDEFLVIEDFESKDRL RRNDQKVREYLKQVKILDLKFDIHISTGYVYGQAQTPDEVYEMIREADRMLYQSKDNVRN QISGGPSRYN >gi|300496046|gb|AEAT01000125.1| GENE 4 3068 - 3241 253 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300812962|ref|ZP_07093350.1| ## NR: gi|300812962|ref|ZP_07093350.1| hypothetical protein HMPREF9264_0455 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] hypothetical protein HMPREF9264_0455 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 1 57 31 87 87 101 100.0 1e-20 MDQEKQLLKDGVALNDYLTLSVKDNHRTFHYYLSPIYDDNTICGLLGLIMDVTSQMD >gi|300496046|gb|AEAT01000125.1| GENE 5 3485 - 4687 799 400 aa, chain + ## HITS:1 COG:SPy0543 KEGG:ns NR:ns ## COG: SPy0543 COG0477 # Protein_GI_number: 15674642 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Streptococcus pyogenes M1 GAS # 10 392 7 396 402 219 35.0 7e-57 MKLNERELANTVKLVTSNSISKLGDILFDYVNSVWLSKLGNGSFWMAVYQSSETIVSVFV NFIGGILSDTKQRKSIIWICDIIAGLLCIALAVFVPSIWLLYAIIAVNIALSVLSSIRDP AYKAVFGEIVRKEQIGRVNSLLESCKQTIKVAGPVLAMVIAKFVGSKMALLLDGLTFIIS GLLIRQLDILFETEPPVAKQSNFSKIKDAFKYLLAEKNILIVIVFASVINFILAGYELIL PFASFAFSKNAYAFFLTAESVGGLLGAVASNLIRKELSSKYLFWIIAVAGLPLAVMSSLY QVSHWLFGPIICITLFNFCVSVFNIQFMTYIQTNADMTYIGRVFSIVFTAAIIFVPLGSF FFQFVMDVKDSVDYLWLGGLLMFVAGLASVIYSLNQRRAE >gi|300496046|gb|AEAT01000125.1| GENE 6 4707 - 5774 818 355 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1591 NR:ns ## KEGG: LDBND_1591 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 355 1 355 355 621 96.0 1e-176 MSTYKKFVWMLREKWQVEELPESPLLRPDDGYFTFSPFQDTEGNFDSLKSTSSIFVKYQP TIRKLNALDLTNPLNLNYQTTYAVQKYQRSNQIDLIKQLIEVSREKLFPQIAASEVEITY PDILHDYFAQRKFEFKLNEVETTDRYLCKLDIPGKHYYIKVRMKFKTGAINVVDFVLVDY DSSDFSSQLDSIWVENLIDLLTENKRFIFDEAKYQAEKAVVAKYTNEPRDQHVIINDVRI VLKVMSLGILPAAKGINSEVKRKIRHLYFYYVYYVNNDVDELVSVVEQIGKAEKYSADIL AIFTDNLRATQKNYQTAVKTVEKKNLTREVAQSSLGLPDEYYGDYLQNWHSEYDF >gi|300496046|gb|AEAT01000125.1| GENE 7 5789 - 6970 682 393 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1589 NR:ns ## KEGG: LDBND_1589 # Name: not_defined # Def: biotin carboxylase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 393 1 393 393 759 98.0 0 MKYFIWAYNPKVVGIRPSQGISFVVPETKTEAYLELEINQIIPVKRIDFQTVYPIFKQKQ AEGEKIEDIFTLQEEIMDWVGVLKAIFVPGKTGVSDVLFKDKYYMRSVLKQEVTEPDFYE LTENSAVESINEGMVKPRRADSTKGISYFKAPLPLSSLKNQSGYLSDKDLLVESFVHYDR MFTVDGYTDFQGHSRFFSHEYNNKLSDFKKTGYFTLHTSSLYYQDQQLLQKLFALSQKAL QALNVERDITPFHFEWFYSDKDQSFVFTEVGKRFGGAKIPKLVKHSFGVDLLEEYWKMQE RRAEEIDWEQPLSPRVCSSSYVQLTNGKTMMESLEEKIPDLFTYEQNHPVGVQSQAAESI GDAFFLAQYTSKDAAASDMFSAKINKAFNEVCR >gi|300496046|gb|AEAT01000125.1| GENE 8 6967 - 8187 573 406 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1588 NR:ns ## KEGG: LDBND_1588 # Name: not_defined # Def: biotin carboxylase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 406 1 406 406 813 99.0 0 MKKIVILAPISNNYINYFDAISGDKDNRYLIFAMERHRDNYPETLPENIKFVFLKIWNEE YIDYVISQTFGQQIDYVYAYSEEEIIFAAKLRKKYQVTLGQSLTSAEEFRNKLTMVKAAE QAHVAVPRYWPVDNVFDLIETEKKLGFPFVLKPIAGMGSMDTFVVHDHVELERLAADKIL RGYLAEEFIPWPLYHVDGFVKQGHFVYLISSKYFANTLEVKNGKSVGSVQISPTAAEQKL IRSYVTDLLKGMDTPENYLFHLEVFCDGREVKLCEIGSRLGGGRILQELEQGLGFSPIQE LLRLDLGLPNKVDLDKEYKSAEIRGFVMVEPGRGILQKLPAADAVLAANPEVYDYYQYAK LGRTYNGAASSVEALAAISVCGKDSRTVEEKLKDLDAWLKKAAVYS >gi|300496046|gb|AEAT01000125.1| GENE 9 8228 - 8752 477 174 aa, chain - ## HITS:1 COG:CC3650 KEGG:ns NR:ns ## COG: CC3650 COG0494 # Protein_GI_number: 16127880 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Caulobacter vibrioides # 2 166 6 174 187 75 30.0 3e-14 MYKVVKKETIKADRFTVIQEKVAKDGQIVPYSYVTIGFGISIIPFVDDDHVLLLKEYRHP VGSWQYEFPSGGIDEGEEPSQAARRELLEETGYEASHLTELGFTYPSFGSTNEKITLFAC RATKMAQPKREILEEIKMEIVSVDQLEDLIVKGEFAHGAGQAAWLKWRLLNERR >gi|300496046|gb|AEAT01000125.1| GENE 10 8884 - 10503 2593 539 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 524 1 541 559 371 43.0 1e-102 MKKTKTFLAAGSILTAALALTACGGNSSSSSSNKKELNWEESAEIPTMDLSKATDSASFT QLINTMEGLYRAKSDGSQEKAMATSEKVSKDGKTYTFTLRKDNKWSNGDPVTAQDFVYSW RRTVDPKTASQYAYLFEGIKNATDIQNGKKKPETLGIKAVGKYKLVVTLDRRIPYFNNLM AFGSFFPQNEKAVKKYGSKYGTASKYMVYNGPYVMSGWSGSSLSWKLKKNPYYWDKKNVK LDAVNYSVQKTPSTAYNLYQSNKLDAVALDAEQSKQLKSVKGYALYPRGTTFYIQFNQAK NKYLQNANIRKALSMAINRESLTKVLGGSNTVAHTFTPAKLTTVNGKDYTSLISKSDEAY TYYNKKEAQKYLKQGMKELGVSKLSFKLLSDDTDGAKKSTEAMQSNIQETLPQVSITTQN LPFKTRLARTNALNFDMVVSAWGADFNDPISFLDLLTSTNAQNGGKWSNKEYDKLIAASK TTGSDSERWSDLSKAEGILLKDVGISPLYSSTSAWIVRPEIKGLVNLRDHWDFKYAHVN >gi|300496046|gb|AEAT01000125.1| GENE 11 10878 - 11246 481 122 aa, chain + ## HITS:1 COG:lin0743 KEGG:ns NR:ns ## COG: lin0743 COG1725 # Protein_GI_number: 16799818 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 108 1 108 125 93 46.0 1e-19 MKFKDNLPIYLQIEDYIYLQIAQGKLQAGEKLPSVRALALELTVNANTVQRALREMTAKG YIFTKRGEGNFVTTDEGRLEEMKSKLLKQELAAFVSRMEKLGVERENLTGLLASYLDDTR EE >gi|300496046|gb|AEAT01000125.1| GENE 12 11248 - 11946 220 232 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 4 213 12 230 318 89 30 2e-17 MKTLEINDLSYHKNSKTILERVNLTLEAGKIVALVGANGAGKTSLMRVIAGLAKQYKGSV EVCGEADEDRRKQYIAMTDSLSAFRDSRKIKDVADFYRLVYPDFDDKQFADILEFMNLNE DERLGSLSKGMKEKLIIALVFSRKAKLYLLDEPFSGVDAMSRKKIIKSMLLWKPEEATLV ISDHVLDEIAPVIDEVVLIKKHSVLEQRSAEEIRAEQESIEEWYEGFYEGEE >gi|300496046|gb|AEAT01000125.1| GENE 13 11946 - 12782 1252 278 aa, chain + ## HITS:1 COG:no KEGG:Ldb1686 NR:ns ## KEGG: Ldb1686 # Name: not_defined # Def: ABC transporter permease # Organism: L.delbrueckii # Pathway: not_defined # 1 278 1 278 278 458 98.0 1e-127 MIGFKQTFAAMFKEKSRTTWLSLGIEAIFILLISLYFGIRYGFGSDSAGIGIGIAATVIF CVGIWYQIDVIMTAYRINRSQTWRQVPVTAGNFLTANVLTGLVTAVIFALANLLIFVITL LPFIFGGEMRIDSQAVATFQPYVSSISNWLLYMTLFALVSFAGGICFWLLITESASVLGD FLPLKGRTSKFAKAVILLALLALSSWGSSSILGAVIRMVSNFGFDFNFVIDNTGLHTSQT DLGLPVISWLYMLAELVYVAILWAAEYFVFKKGVEAKK >gi|300496046|gb|AEAT01000125.1| GENE 14 12927 - 14429 2281 500 aa, chain + ## HITS:1 COG:L0349 KEGG:ns NR:ns ## COG: L0349 COG0008 # Protein_GI_number: 15674035 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Lactococcus lactis # 3 493 2 483 483 553 58.0 1e-157 MANKKIRVRYAPSPTGHLHIGNARTALFNYLFARHNKGTLVLRIEDTDTARNVEGGAESQ IENLHWLGIDWDEGPDIGGDYGPYKQSERKDIYQKYIDQLLEEGKAYYSFKTEEELEAQR EEQRAMGIAPHYVYEYEGMTTDEIKQAQDEARAKGLKPVVRIHIPEGVTYEWDDIVKGHL SFESDTIGGDFVIQKRDGMPTYNFAVVVDDHLMEISHVLRGDDHISNTPKQLCVYEALGW EAPVFGHMTLIINSATGKKLSKRDESVLQFIEQYRELGFLPEAMFNFITLLGWSPVGESE IFSKREFIKQFDPARLSKSPAAFDQKKLDWVNNQYMKTADRDELLDLALHNLQEAGLVEA NPAPGKIEWVRQLVNMYANQMSYTKQIVDLSKIFFTEAEYLTDEEVEEIKKDEARPAIEE FKKQLDKLDNFTAKKIMGAIMATRKETGIKGRKLFMPIRIATTRSMVGPGIGEAMELMGK DTVMKHLDLTLKQLSEAGIE >gi|300496046|gb|AEAT01000125.1| GENE 15 14511 - 15536 1332 341 aa, chain - ## HITS:1 COG:SPy1056 KEGG:ns NR:ns ## COG: SPy1056 COG2855 # Protein_GI_number: 15675048 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 22 341 22 339 339 328 60.0 1e-89 MNWIKKNLPGILVCLAIATPAWLLGKALPVIGGAVFAILFGMIITLFWEEKKGAASGIKW TSKYILQTAVVLLGFGMDLQVVVKTGRQSLPIIICTISTSLLLAWLLHKSLNIPGKISTL IGVGSSICGGSAIAATAPVIDADDDEVAQAISVIFFFNVLAAILFPIFGKLLGFDQTSGT SFGIFAGTAINDTSSVTAAAATWDSMFHLGSQTLDKAVTVKLTRTLAIIPITLALGYFTA KKEQRDNSFSLKRAFPAFILYFVLASLITTFALANGVNANVFLPLKELSKFMIIMAMAAI GLNSNIVKLVKSGAKPLLLGASCWAGITAVSLLLQRLMGLW >gi|300496046|gb|AEAT01000125.1| GENE 16 15655 - 16530 1156 291 aa, chain + ## HITS:1 COG:aq_638 KEGG:ns NR:ns ## COG: aq_638 COG0583 # Protein_GI_number: 15606065 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Aquifex aeolicus # 1 274 1 279 303 129 29.0 9e-30 MLDFRVKTFLTVCETINFTRAADRLHVTQPAVSQHIRYLEKEYQVKLFSYQGKKLTLTAA GEKLRQAMRQMQSDERLLKAEIKQADLPPVRFGVTMTIGEYALARPLSRFLKDHPQTNVE VVYGNTQFLTKKLDEGDLDFALIEGDPARGYASLRYQSEDFIAVCSPDLSFAKEPDQIAD LFDQRLLVREPGSGTRKILEDSLGAQGQELSDFKQYVQVGNMQMITQLLLANCGVSFLYQ TAVSDLLKAGKLRKLSLRDFQIRHDFTFIWEKNSLYADRHQQICAELKASR >gi|300496046|gb|AEAT01000125.1| GENE 17 16576 - 17994 1577 472 aa, chain - ## HITS:1 COG:SP0623 KEGG:ns NR:ns ## COG: SP0623 COG0624 # Protein_GI_number: 15900531 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pneumoniae TIGR4 # 16 456 17 450 466 365 44.0 1e-100 MTFPYQEFAREKMPALLADLKDLIKIDSVRDMDLATPEFPVGPGPVKALKKFLAYADRDG FQTENIDNYAGVVTFGQGTQELGVAVHVDVVPPDEGWSQDPFTPWVKDGRVFGRGASDNK GPALAAYYALLALKEAGFQPKKKISLIIGTDEETDWVGMKYYLQKRPAPDWVFSPDSSFP IVTGQAGLAVLKTDFIGKEATGLILESFTAGQATNMIPAAATAVVSGKNLAKIAAAFPDF LAKNGLTGEINESAGDNGTSLKISLEGVSAHASVPWEGKNGACLLASFLRTFPFTGRAKN FLDFAGEFELEDYYGGKIGIANTDSEMGKSINCPAVFRYQRDQAEACIKSDIRYSRGTSP EKMCQQLNDKFGAFCQTTFQPYQDFEKPHFVASDDPFVKTLLSVYEKQTGQAGATVISAG ANYGRFFKNGVGYGPAFPDSLDTAHAIDESVSLAELEKSLAIYAEAIYELTK >gi|300496046|gb|AEAT01000125.1| GENE 18 18016 - 19623 2816 535 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 30 535 45 559 559 312 40.0 1e-84 MKKSAIITLALSASLLSACSNTFASSSKTKQVLNWFSAGEISTMDPALNNDVYGGEQLDA TMEGLVHLGNNSKILPGIAKSWKESKDGMTWTFKLRKNAKWSNGESLTAKDFVYAWRRQV NPKTASTQSNKYSGIKNADAIVASKKPVPSLGIKAVGKYKLVVTLERKIPYFQLLLAGSA FAPQNQKFIEKAGKKYGTAAKYTLSDGPFVMKGWTGSNLTWKLVKNKYYWDKKNVKLTKI NFSVQKSQSTSYNLYQVGKLDMTTLSASQSKSLKNQKGWQIKKSNRTQYLMYNFKTDKNL RNVNLRGAIAAAINKESLAKTLNLADIAATSLTPSGVTDPVTGKEVVTKRTKAIQSGTKA QAKAYYKKALKELGKKQIIIKLLGDDTDDAKKATEFIQSALESTLGMKVEVTNMPFKNRF AREEAGDFDVILDGWSGDYADPNTFLEMFQKTNVNNYGSWENAAYNKAMETSKTTTSSKK RWAELVKAERILLTQQGVTPLYYGNTATLINPKVKNITLKGAGLAYNFKGAYISK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:42:54 2011 Seq name: gi|300496037|gb|AEAT01000126.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00059, whole genome shotgun sequence Length of sequence - 8777 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 4, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 5 - 283 126 ## LBUL_1854 glycosyl transferase family protein 2 1 Op 2 . + CDS 316 - 1434 574 ## COG0438 Glycosyltransferase + Prom 1784 - 1843 5.0 3 2 Tu 1 . + CDS 2049 - 2276 180 ## LDBND_1482 transposase + Prom 3065 - 3124 5.2 4 3 Op 1 . + CDS 3150 - 3545 75 ## LGAS_1144 polysaccharide polymerase 5 3 Op 2 . + CDS 3583 - 4257 -381 ## mru_1525 glycosyl transferase GT2 family 6 3 Op 3 . + CDS 4263 - 5015 32 ## mru_1528 glycosyl transferase 7 3 Op 4 1/0.000 + CDS 5056 - 6168 1850 ## COG0562 UDP-galactopyranose mutase 8 3 Op 5 . + CDS 6171 - 7601 1363 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid + Prom 8195 - 8254 2.1 9 4 Tu 1 . + CDS 8393 - 8590 102 ## gi|300812981|ref|ZP_07093368.1| glycosyltransferase, group 2 family protein Predicted protein(s) >gi|300496037|gb|AEAT01000126.1| GENE 1 5 - 283 126 92 aa, chain + ## HITS:1 COG:no KEGG:LBUL_1854 NR:ns ## KEGG: LBUL_1854 # Name: not_defined # Def: glycosyl transferase family protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 87 78 164 164 134 79.0 2e-30 MEALQYGKVPIVVPRQLKFNEHVNNHQVDFTKLIAERMNNIIPVYDIANLGQTIADYDTI VKKKNSGESSNNLKFNADLDKIVDEMMERYVQ >gi|300496037|gb|AEAT01000126.1| GENE 2 316 - 1434 574 372 aa, chain + ## HITS:1 COG:SP0353 KEGG:ns NR:ns ## COG: SP0353 COG0438 # Protein_GI_number: 15900282 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 366 1 365 372 192 34.0 1e-48 MMMRVLQILDSLDMGGIESYLMNIYRHIDRTKVQFDFVIFKETNFFEEEAKHLGARVYKC LDDSYKEQLRFVRDIQLKYNYPIVHCHNCSLKGLIRGTFSVRYLKNRPIIVAHSHNPGMP TNTTSDKIIRYLLKKIITDSSDYYFACSQESSDSKFLLGKDPTRYAIVKNGIEVQAYSFD SKIRKEIRKELNIDDSTFVYGSVGRLEAQKNHEFLIRRFAEVVKLRDDVKLLLVGDGSLR EQLIELAKKLDVFNKIIFVGTKDNSNDYLQVMDMFVFPSIYEGLGISLIEAQANGLPSLV SDIIPKEAFVTDLVTSVPLTNFDRWTRYMVGGVQQENRSLEYVKEVRKAGYDIQEVAAFL QNFYLEKSEIMC >gi|300496037|gb|AEAT01000126.1| GENE 3 2049 - 2276 180 75 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1482 NR:ns ## KEGG: LDBND_1482 # Name: not_defined # Def: transposase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 6 75 86 155 155 117 85.0 2e-25 MDTLPKNMKCAKQHNDRELMAICGTIESVFSVLKYYGIENIFARSINGFQQTVKIIVLTY NISYILQRYGFSFFS >gi|300496037|gb|AEAT01000126.1| GENE 4 3150 - 3545 75 131 aa, chain + ## HITS:1 COG:no KEGG:LGAS_1144 NR:ns ## KEGG: LGAS_1144 # Name: not_defined # Def: polysaccharide polymerase # Organism: L.gasseri # Pathway: not_defined # 5 119 263 381 386 62 30.0 5e-09 MSKMNDALTQRLRFASQGLANWGLSLFGQSIVWKEDTINYNYIDNSFVNIAICYGVIILL VVVVGFTIALKKSISDRDTFLTLVLILWAIKAFVDPQLFLLWFNPFLFSMGDALFETRKE RLPSVIHNMCV >gi|300496037|gb|AEAT01000126.1| GENE 5 3583 - 4257 -381 224 aa, chain + ## HITS:1 COG:no KEGG:mru_1525 NR:ns ## KEGG: mru_1525 # Name: not_defined # Def: glycosyl transferase GT2 family # Organism: M.ruminantium # Pathway: not_defined # 1 210 23 230 258 132 37.0 1e-29 MHSQNYNDYEEILVDSVEHRFSSASEALNYGGNLAKGDYLIFLHQDIVLDDENVLSKVAD YCDKNTFGCAGVAGFTVKNSKRLNFYSNIVHGDQKKEIADDVQTINQVMEVYSLDECVLI IPKNVFEQYKFRYLGKTWHMYALDYALQMQDSNQSILVFPITLWHCSDGKSFNLNYFDAV KVLCERSRGQHQKIYTIWGEWPTNSLLINLKTIYRKTRYRLRGY >gi|300496037|gb|AEAT01000126.1| GENE 6 4263 - 5015 32 250 aa, chain + ## HITS:1 COG:no KEGG:mru_1528 NR:ns ## KEGG: mru_1528 # Name: not_defined # Def: glycosyl transferase # Organism: M.ruminantium # Pathway: not_defined # 1 227 6 226 266 184 43.0 4e-45 MKIFVITHKEFKLHTKDADLYQPMLVGAAIGNKGDSSYIRDNSGDNISSKNGSYCELTGI YWIWKNSKEDIVGIDHYRRYFVEKKSKFKQRYLTSEDIERCFKKYDIILPTRETEIYNHK SAKEFFIENHGKEVWNSTREIICRLVPEYVEDFDWFANQKTGYCYNMMICNKKIFDDYCD WLFKILGELEKETDLTKYSDYNKRMYGFVSERLVNVWIHNKDLRVKEYPVYFDDGRSLVT KIKDKLKNSF >gi|300496037|gb|AEAT01000126.1| GENE 7 5056 - 6168 1850 370 aa, chain + ## HITS:1 COG:glf KEGG:ns NR:ns ## COG: glf COG0562 # Protein_GI_number: 16129976 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-galactopyranose mutase # Organism: Escherichia coli K12 # 2 366 3 362 367 454 60.0 1e-127 MNYLIVGAGLFGAAFAREAAKRGHEVTVIEKRDHVAGNIYTKEIDGIQVHQYGAHIFHTS NKEVWEYVQQFAEFNRYTNSPVANYKGKMYNLPFNMNTFTQMWGVRTPQEAMDKINEQRA EMAGKTPQNLEEQAISLIGRDIYEKLIKGYTEKQWGRKATELPAFIIKRVPVRLIYDNNY FNDDYQGIPKGGYTKLVENMLKHDKITVELDTDFFAKKDEYLQKFDKVVYTGPIDEFFDY KLGELEYRSLRFETEEKDVGNYQGNAVINYTDAETPYTRVIEHKHFEFGKGDPDKTIITR EYPADWHKGDEPYYPVNNDRNNDLYAQYKEMADKEDAKVIFGGRLGQYKYYNMDQVIAAA LEAVNDEFGK >gi|300496037|gb|AEAT01000126.1| GENE 8 6171 - 7601 1363 476 aa, chain + ## HITS:1 COG:SA0127 KEGG:ns NR:ns ## COG: SA0127 COG2244 # Protein_GI_number: 15925836 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 5 473 8 474 476 184 27.0 4e-46 MRVVKNYLYNVGYQVLAIIVPLITSYYVSRVLSPEGVGANAFTNSIIQYFMLLANIGIGY YGNREIAYVRDNKQKMAATFWEIQIVKTVMTVVAYLSFVVFMAFYSGNKTYMWAQSINLL AVAFDISWLYQGLEDFKRTVLRNTFVKITSMIAIFIFIKSPKDVALYIIVLALSTLLGNL TLWPHAVNNYGHVDRGTKLNPWRHFVPTVTMFVPQIATQLYVQLNRTMLGLMVDQKASGF YQYSDNLVKLILAFVTATGTVMLPHVANAFAQHDMEKVHKMLYKSFDFVSALAYPMMFGI AGVSMTLAPLYYSSKYAPVGPAMLIESIIILMIGWSNVIGTQYLLPVNRVKEFTSSVTVG AVVNIILNFPFIHFWGLNGAMWATVISEFSVTCYQLWVVRHELSMHKLIFATWKYFVSGL VMFIVVFWLNTHMPSNWIWIILETIVGIVIYTGMILLLKAPIVDQAKELVRDKKRS >gi|300496037|gb|AEAT01000126.1| GENE 9 8393 - 8590 102 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300812981|ref|ZP_07093368.1| ## NR: gi|300812981|ref|ZP_07093368.1| glycosyltransferase, group 2 family protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] glycosyltransferase, group 2 family protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 1 65 231 295 295 123 100.0 5e-27 MGDVAEELLSNSGDFSDIDRRFLMSASTYKKKISAKINLLRNKATKDTNMRIKRSYYLRI ILNLY Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:43:19 2011 Seq name: gi|300496016|gb|AEAT01000127.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00016, whole genome shotgun sequence Length of sequence - 22581 bp Number of predicted genes - 19, with homology - 19 Number of transcription units - 12, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 1080 1071 ## COG0534 Na+-driven multidrug efflux pump - Term 1052 - 1093 5.0 2 2 Tu 1 . - CDS 1240 - 1734 550 ## COG2199 FOG: GGDEF domain - Prom 1793 - 1852 5.0 + Prom 2044 - 2103 6.1 3 3 Op 1 24/0.000 + CDS 2125 - 3201 1229 ## COG0505 Carbamoylphosphate synthase small subunit 4 3 Op 2 . + CDS 3194 - 6394 4501 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) + Term 6428 - 6457 1.2 + Prom 6431 - 6490 2.3 5 3 Op 3 . + CDS 6606 - 6830 292 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 6858 - 6904 11.2 - Term 6849 - 6886 6.2 6 4 Tu 1 . - CDS 6892 - 7641 784 ## COG0500 SAM-dependent methyltransferases - Prom 7667 - 7726 3.5 + Prom 7983 - 8042 2.0 7 5 Tu 1 . + CDS 8066 - 9547 1504 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Prom 9570 - 9629 3.3 8 6 Tu 1 . + CDS 9718 - 10623 883 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Term 10638 - 10672 4.0 - Term 10616 - 10669 4.3 9 7 Tu 1 . - CDS 10672 - 11373 873 ## COG2013 Uncharacterized conserved protein - Prom 11436 - 11495 8.2 - Term 11417 - 11457 1.5 10 8 Tu 1 . - CDS 11516 - 12109 767 ## COG0406 Fructose-2,6-bisphosphatase - Prom 12147 - 12206 7.1 + Prom 12274 - 12333 5.7 11 9 Op 1 . + CDS 12510 - 13574 747 ## LBUL_1057 hypothetical protein 12 9 Op 2 . + CDS 13561 - 15081 1508 ## LBUL_1058 hypothetical protein 13 9 Op 3 . + CDS 15069 - 16067 1025 ## LBUL_1059 hypothetical protein 14 9 Op 4 . + CDS 16054 - 17289 1358 ## LBUL_1060 chromosome segregation ATPase 15 9 Op 5 . + CDS 17141 - 19819 2070 ## LBUL_1060 chromosome segregation ATPase + Term 19829 - 19866 5.1 - Term 19815 - 19856 3.3 16 10 Tu 1 . - CDS 19877 - 20248 243 ## LBUL_1063 hypothetical protein - Prom 20299 - 20358 5.8 - Term 20349 - 20393 4.1 17 11 Op 1 . - CDS 20398 - 20907 389 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 18 11 Op 2 . - CDS 20920 - 21564 869 ## COG1073 Hydrolases of the alpha/beta superfamily + Prom 21832 - 21891 7.9 19 12 Tu 1 . + CDS 21917 - 22555 1105 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases Predicted protein(s) >gi|300496016|gb|AEAT01000127.1| GENE 1 1 - 1080 1071 359 aa, chain + ## HITS:1 COG:FN0667 KEGG:ns NR:ns ## COG: FN0667 COG0534 # Protein_GI_number: 19704002 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Fusobacterium nucleatum # 16 249 113 338 426 89 25.0 1e-17 IARDTLFLSAISGLVLVVIAWISLPALYKAVSLPENMVGDALLYGRVYLFALPIIYIYDV GRAILISNERAKISFYLLATSSILNLLLNLLFILVLQLGVLGSALGTVLAQGITMLVTLY LLAKMDRQEEEPVSLNPDLSWTKIKSILHIALPTIFQQFAITFGATLVQAWVNPFGQEAI LGYVAIVKVMNLARIVLVGFAQTLTLMTAQLLAAKTYSAVKAVYRYCSNVSLIYWLVSSA LSVIFCQLLAGMFFDPGQNQAAYSFFRVYLYAFVGIQLFSIFKFLNEGLLRSMVLMKEYL YCNLGELALKLAATWLLLTPLQTNAFWSAELGARIICVLGSTILVIKEMQALEAIERAG >gi|300496016|gb|AEAT01000127.1| GENE 2 1240 - 1734 550 164 aa, chain - ## HITS:1 COG:all1219_3 KEGG:ns NR:ns ## COG: all1219_3 COG2199 # Protein_GI_number: 17228714 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Nostoc sp. PCC 7120 # 48 154 29 140 199 66 33.0 3e-11 MTGIGSVINVTAIICGGLLGLNFGYLLKARVQEILIVACGLDVEKSEFLSENDLLTGIRN RNYYQHEINNLLQAAQESVTYVFCDVNGLHETNNKFGHEAGDRMLIALASELAKSFGQDM SFRFGGDEFLAIALDERLDKVQAKSDQILSNLKKQCYHVSIGIK >gi|300496016|gb|AEAT01000127.1| GENE 3 2125 - 3201 1229 358 aa, chain + ## HITS:1 COG:BS_pyrAA KEGG:ns NR:ns ## COG: BS_pyrAA COG0505 # Protein_GI_number: 16078615 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Bacillus subtilis # 1 352 1 350 364 330 47.0 2e-90 MRARLILEDGHVFEGESFGAIHDVISEFVFNTAMTGYVEVLTDPSYAGQSVVMTYPLIGN YGVPLDDQEAAHPFVEAFVVSELSRLGSNFRMNMSLNDYMIENNIPGIQGVDTRAITRIL RKEGCMNGMITTKDYEVSEVIDQLKAFKIQGVVEKCSCLEPYHVGQGDYEVALYDFGAKR NIARELAKRGCRVTVLPADTPAQYVLDHNFDGIMLSNGPGDPSECTEIIDQLKILASSGI PIFAICLGHQLLALAHGFETEKMVYGHHGSNHPVKDLTTGRVYISTQNHNYVIKEDTIDP KQAKVWFKNVNDKTIEGLEYLKENIKSVQFHPEACGGPHDTEYLFDSFIEMMGEHKNA >gi|300496016|gb|AEAT01000127.1| GENE 4 3194 - 6394 4501 1066 aa, chain + ## HITS:1 COG:BS_pyrAB KEGG:ns NR:ns ## COG: BS_pyrAB COG0458 # Protein_GI_number: 16078616 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Bacillus subtilis # 1 1052 1 1050 1071 1205 56.0 0 MPKRDDIKKVLVIGSGPIIIGQAAEFDYAGTQACRALREEGIEVVLINSNPATIMTDGDM ADHVYIEPLTVPVVKQLMEKEKPDALLPTMGGQNALNIAMALADEGFLEKHHVKTIGTDT DTIKMAEDRLEFKNLMERIGEPVAKSVVVNYVEDAIAFAKEIGYPVVVRPAYTLGGTGGG IAHNEQELHEICSNGLRLSRVTECLIEQSIAGWKEVEYEVMRDGAGNCITVCNMENMDPV GVHTGDSIVVAPSQTLSDKDYQMLRSSALNIITALNIKGGCNVQFALNPDSFEYCVIEVN PRVSRSSALASKATGYPIAKLATKIALGYNLDEIVNAVTGKTYASYEPTLDYIVCKIPKW PFDKFYDASRKLGTQMKATGEVMAICNNFEGAFMKALRSLEQDSYYLYNEEIAQLSADDL RKDLRKIDDKRAFRIAEALRKGVSIQEIHAITKIDVWFIDKIKHLVEIEDRLKSEELTPD LLKLAKHCEFPDRVIASLTGKTADEVYYLRKGLKITAAFKTVDTCAAEFDAETPYFYSVY GGEHEIQPDRSKKKVIVFGSGPIRIGQGIEFDYCCVHSVWALKEAGYETIIVNNNPETVS TDFDIADRLYFEPLTAEDVQSIIELEQPDGAIVQFGGQTAIKLSQDLMKMGVPILGTSAD SVDAAEDRERFDEILGKCQIDRPKGQTVFTAEEALKAANELGYPVLVRPSYVLGGAGMEI ALNDGDLKRFIDHITSQFNIEDHPILIDKYLAGKECEVDAICDDEGILIPGIMEHVERAG VHSGDSISIYPPQKISQEMKERIVEYSKRLAKALKVKGLMNIQFIVYENKVYVIEVNPRS SRTIPYISKVTGIPLVDVATNVIIGKSIKEQGYDYGLAPEKKTVAVKMPVFSFEKITGAE IALGPEMKSTGEVLGISDDVEEAMYKAFMGTGLDLPKHKKVICTVKDSAKEEFLPIAKEY HDFGYDLYATQGTYDFLQSHGIPARLINRINDKENTIFDLILTETVDLVIDIPTRNNNLK DGFLIRRFAVEAGVPIYTSLDTARALIHALEAKHDNKISLVDITKL >gi|300496016|gb|AEAT01000127.1| GENE 5 6606 - 6830 292 74 aa, chain + ## HITS:1 COG:SP1918 KEGG:ns NR:ns ## COG: SP1918 COG1132 # Protein_GI_number: 15901742 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Streptococcus pneumoniae TIGR4 # 11 73 278 340 343 87 65.0 5e-18 MKWSDLRSMFGMDRLMQGRTAFVIAHCLSTIRDADSIIVLKDGDIVEVGNHDSFMAKKGF YADLYQLQFEHGEE >gi|300496016|gb|AEAT01000127.1| GENE 6 6892 - 7641 784 249 aa, chain - ## HITS:1 COG:FN1919 KEGG:ns NR:ns ## COG: FN1919 COG0500 # Protein_GI_number: 19705224 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Fusobacterium nucleatum # 1 249 1 249 249 348 64.0 8e-96 MNYQDINSETIDRWVKEGWEWGKAIDHDTFQAAIEGKWEIKLTPVKYAPHSWFGDLHGQK VLGLASGGGQQMPILTALGAKCTVLDYSDQQLESERLVAEREGYDIDIVKADMTQPLPFA DESFDMIIQPVANCYVEKVKPIWKECYRVLKKGGVLLVGLDNGINYLFDSEDEKYVVNSL PFNPLKNPDQMQQLEKDDYGVQFSHTLDEQIGGQLEAGFTLTNLYEDTNGEGRLHELNIP TFIATRSVK >gi|300496016|gb|AEAT01000127.1| GENE 7 8066 - 9547 1504 493 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 4 453 3 458 549 279 38.0 1e-74 MKVRKMATVALLGMSACTLAACGNSNSQASNGKTSLNLMETDVVSSLDTSVTASIPQWDT LVQTMAGLYRSDKNDQPVPAVATSYHKSSDGKTYTFNLRHNAKWSNGDTVTAQDFVTAWR KGVSPKAMSGYNYIFSNIKNADQISQGKKAVSSLGVKAVGKSKLVVQLENPEPTFIDKMV MPAFYPQNTRLVKKYGAKYGTAAKYTAFDGAFKVTKWTNTSEKWTAVKNPHYYAKSAVKL QKLNYQVVKDSNTAHQLFQQGSLDDDDAVVSGTTAQGLQNNKNLYHLYRSGNNFVNLNMA EGAVLANKQLRQALYLSVNRTQLSKKVLADGSKPSYTFSAPNAAKDPASGKDFATAAQPK ETYNVAKAKKLWQAGLKQLGKSKVELTLVASDTTTDKNVSEFLQSQLESKLPGLKVTVKN LPSKSAYNLVANGKYDLYLSLWLNDYADPYSELQTLEKTKATITVNTPVLPTTMSSAKPE KKPRPDQSTSATC >gi|300496016|gb|AEAT01000127.1| GENE 8 9718 - 10623 883 301 aa, chain + ## HITS:1 COG:SMc04033 KEGG:ns NR:ns ## COG: SMc04033 COG0596 # Protein_GI_number: 15966569 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Sinorhizobium meliloti # 11 290 16 291 296 147 30.0 3e-35 MDQTRIVTLDNGYHLFTRKVNEGPVKLLCVHGGPGDNHEDFDNFKAGLAGKGVEVYSYDQ LGSYWSDQPDFSKEENRKYLTVDYFVDELEEVRQKLGLENFYLLGHSWGGLLAQEYAVRY GQHLKAVVIESMIDNLDEYTVNINRERDEMFSPAQVEYMKECEASENFDDAMYQELVAKL YSVYLVRHPENATRHVVSTTNTQVYNYFQGNNEFMMVGKLTEWDFRDKLAQITLPTLLTV GEFDTMPLDAVRRMHHSLKNSRMVVTPDGGHCHHVDNPDAFFSSLYKFISDVEAGKFVEV K >gi|300496016|gb|AEAT01000127.1| GENE 9 10672 - 11373 873 233 aa, chain - ## HITS:1 COG:L178908 KEGG:ns NR:ns ## COG: L178908 COG2013 # Protein_GI_number: 15672568 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 229 1 231 232 214 50.0 1e-55 MKYELSGGNTCPLATVTLDKGESIKVENGAMVYMKDVTIAGKMNSSKKGLGGLLGAIGRS LTSGESMFITQATGDADSGQIGVAPAIPGKIVKLSVGKQQYCLNTGAFLASDDSVSYKMK SQSFSKAAFGGTGGFYVMQTEGEGDMLVNAFGDLVELTVTSNKPISIDNEHVIAWDANLD YDIKVASGMFGFTSGEGLVNHFTGDGKVIIQTRNLRSLAEALQPFIVEKNSNS >gi|300496016|gb|AEAT01000127.1| GENE 10 11516 - 12109 767 197 aa, chain - ## HITS:1 COG:lin1208 KEGG:ns NR:ns ## COG: lin1208 COG0406 # Protein_GI_number: 16800277 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 1 187 1 189 199 223 57.0 2e-58 MEKILYLMRHGQTLFNLEHKIQGWCDSPLTELGINQAKIAGRYFIDNKIKLDHCYASTSE RASDTLELVTGGKLPYIRLKGIKEWNFGRFEAMDELLNPPLPYKDFFVKYGGEDQEEVGE RVAKTLSQVMQQEDHHSVLAVSHGGAMVCFLRYYKQPLPHEMKNCTILKLKYEDGQFTLL DYFEPDFSELDQLILSS >gi|300496016|gb|AEAT01000127.1| GENE 11 12510 - 13574 747 354 aa, chain + ## HITS:1 COG:no KEGG:LBUL_1057 NR:ns ## KEGG: LBUL_1057 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 100 354 2 256 256 498 99.0 1e-139 MIDWHALTRDLYLEKGEDQQLKNWRVTLTKADLLDLGLLTKAKLDKDGNYSIPCYQIFKQ YDQSPAEVYQELENKYGPLLSKKDRRKQKGSADQVKLDKFKEDVAPAYAAFLAENFSEKQ IISDLPFYQKMAKGWEKPVEGVLLPTFALQVLGDPHAFDRGRRGRGLLEKIIQAQLGEEG TLEDFNVYPDQLYNFAMTANLLDTPLTYDIIALPDIDQIALPEKIKVYLHENSGVTTALA SKFSDRAFVCTGGQVNLATKKLIKRLLANSCQLYYSGDLDQSGIKIADNLLLEFPEIHLL NMDLKTYKEHYQASVPPVKDKQIKEVENPDLQEVLTEIQKKKRVIFEEAIHEFL >gi|300496016|gb|AEAT01000127.1| GENE 12 13561 - 15081 1508 506 aa, chain + ## HITS:1 COG:no KEGG:LBUL_1058 NR:ns ## KEGG: LBUL_1058 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 506 1 506 506 880 97.0 0 MNFYDNQSFMSQADGFLKAVSSPGLARDIIIYLNSHPMGEYTPLQLSEQLLADYDEVTKI LKKLSESKNLKSIPLTNQAKARSMKEAMQTTAYALTSESMELFQAFDKIANLQKQIRESL SMTETDELIKNLRELKESLEGLLTDPENLELKQQLFKDGISLYDLSFGYNNGIYNRLKNR IDSFATNIHDLNMQVFRLETDANTTSDLNQELFKLRDVVKEVLDKVESKIPEVLETIFAL EESQTKIGPKLFYQPLADELLAFNATKSSDELSDIMAGNIADIAQSERDGSGLYASLLDR LSDMFFALIDLISQNREIQVSKQRAERFLAQAQSFQAGMTAQEMALLFDQYEGTPVYHHW FMSKHASYSLDDEKIHYNFTPKERKRAEVKLARSMELTDKEKAELAAEQARHAAEKAKQA ELGQNLINKALINLTDEEFAFLQKLLGQSHFDYRFSADGDLLSASATTGDYLLIKQFQTE NMIIESPKQSLILCNCRLEVKSRWQK >gi|300496016|gb|AEAT01000127.1| GENE 13 15069 - 16067 1025 332 aa, chain + ## HITS:1 COG:no KEGG:LBUL_1059 NR:ns ## KEGG: LBUL_1059 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 332 1 323 323 569 96.0 1e-161 MAEIDWSQVMPNLLAGKTTAYIRQNRLAISKYLKDKFNLVLDQDLHLRAYSKTRPVGIEA DKRVQADPLLYRVYYETLARLTSLQVGMTILYQDIVAYINDKENLSEASSVELSKYLKPV IAKLEKDGIIELRDQDDKDSLYVLTKQAKPQDPIDLEKGMQTANDLARQELLLNGFFRKE NMGKNEYNYLQNSFEPFFNHESKQGLRLVNVDDYFILLNYSQLDFPNTVQSKLDAMSVEL VQLINDSRQSRFQLPELVNLAKQTSSYKTMTGSQKATGLKMKVSELLNELTNYGLLSKEQ DTGLLTKEQDTWFTTSLTGLIVKDEEMTDDEL >gi|300496016|gb|AEAT01000127.1| GENE 14 16054 - 17289 1358 411 aa, chain + ## HITS:1 COG:no KEGG:LBUL_1060 NR:ns ## KEGG: LBUL_1060 # Name: not_defined # Def: chromosome segregation ATPase # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 394 1 394 1250 664 96.0 0 MTNYKLNRFGFYNYFNYRNQTFDANTQSIVFNGENGSGKTATMLSLFPTIFLGSMRVVDN KRSLDYYIKAGEAGFAWAEFKADDLLQTLLLAYSKSADGSNTNHYYYVLKQGVKGDDLPY STSWPEFRGAVKPYVERRYETQADYQNAINQLFFGFASQSEMQEYFEHLAAFEKPPLKQT GSTAELDSALKTALPNLRHYADRATVENFIDNALAMVEEEKKKAELDKLNNALAKTEEWE TLTNKPTLAQIQNFYGKAKTELGQKQEQFEKLKASLAETEEAIAQLKSDQASISQDSKAK EGEQQALQAVIDAKNLDQLSRKIAQTKDERNNRARDFEAAQKDRKNAEKRLLAYTEDARK EKNALVILEGRLATTKTELAKYQVQADFEEKYPEKVPRCKGSAEETKAAPG >gi|300496016|gb|AEAT01000127.1| GENE 15 17141 - 19819 2070 892 aa, chain + ## HITS:1 COG:no KEGG:LBUL_1060 NR:ns ## KEGG: LBUL_1060 # Name: not_defined # Def: chromosome segregation ATPase # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 31 892 389 1250 1250 1389 97.0 0 MLSLSLKADWQRPKQNLPSIKFKLILKKSTQKKYPDAKGLLKKQKLLLDKLDKLAEQNQE LATELGIVNQAINAFDETIYTDNIASALAELDQETSAWLKEREISFDQVAEFDLDVYEDR RHLLENARGQYQEAIAETKNDIRLEKTQLKHLNSDLEKLQEQPKPETTAEFEDGKQLFEL VDFKEGVPSNLQLQLESDLKYSNLLYALFDGQEIKTGLEADGFTANVNNASTKDLPTLAD YLVSQDDRVNAFLQTIAVKDGHISYASVNVHSEKGTAITHIGESNRQKERERQIALLTEE INQVKQRLADLADKLASYQELFKQADPATFPKSNKVTEAQIAYNNALAEQDKRLKKQEKL QVQLADFHRQKEQFTSELCPDLPAESKEFADYRLAWDKYQDKQVQRIMQENDLLKQKDRL ASAESRIKQAHAELSEKTKQVQDKQDRLTEIKAQIATLEKQLEEIRNDPETKKQLARKEE LDQLLKELEKQLNEIEFKLERENNHLTAYQERLPEKQAAYEDLDHEYAAVSDLLEKLNLT EKVKDASPNDWNSEQVKASNQSKANLAMSAVNSINDKTDYRVDNSKRLEFEDIELSDYLL VQVQNLLHEIAVVHYYYGGQELELSKLYDDIRQQLESFQASADDEVQRLARYLNNSTILQ KIRQATAEATTLTKQISKSLKEKEQTSHISFYTSFSEIPDYRKDYLAAFGNTSIDSPESQ NAVTLLMDRFWTYIKDNNDEMTRDELVDHFYEEFDYKKWYRFNISFRRHAGDAPEKMTDR KLNAFSEGQRSRAILEPLLIVLELDEKKMSNPLAPKIILMDESFSGIDDEQQELLLKNIY DIADNFIATGYNARLAVPENSKDTTYFTLIDHTVDGKNHFISVEQSIVRKNR >gi|300496016|gb|AEAT01000127.1| GENE 16 19877 - 20248 243 123 aa, chain - ## HITS:1 COG:no KEGG:LBUL_1063 NR:ns ## KEGG: LBUL_1063 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 123 1 123 123 190 97.0 2e-47 MFTQKQKTIVYRVLMAIYLVALGPNYTFGYATQDNPTNRFFLIANLLSIVALILAAVWID RPKLFKAVSVMMVIVAILAVVQLVFPGQSAYARYSNAWAIINIIWAVLTVLYQKQQLQMK KHA >gi|300496016|gb|AEAT01000127.1| GENE 17 20398 - 20907 389 169 aa, chain - ## HITS:1 COG:MA0410 KEGG:ns NR:ns ## COG: MA0410 COG0110 # Protein_GI_number: 20089303 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Methanosarcina acetivorans str.C2A # 4 167 8 191 191 129 38.0 2e-30 MKLEDFLAHVNSGKRIVDPSEELEYCSYLTQEALKVTMELNNAYHTPEEVQDLFAKLTGS EVNRSLALVPPFYTDCGKNIHVGDGALIGHHAMIATLNHKQDPAKRGELLSAAVHIGKRV WIGANVTVLPGVTIGDGEIIAAGAVVTKDIPARTIAAGVPACVVKEITE >gi|300496016|gb|AEAT01000127.1| GENE 18 20920 - 21564 869 214 aa, chain - ## HITS:1 COG:PA2218 KEGG:ns NR:ns ## COG: PA2218 COG1073 # Protein_GI_number: 15597414 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Pseudomonas aeruginosa # 1 213 162 367 367 181 44.0 1e-45 MSVQDNVDPERIGIIGICGWGGIALQTAAIDTRIKATVTSTMYDLSRVTGNGYFDANDNE EPRHKMRVALNKQRTADFKAGSYAKAGGVVDPLLEDAPKFVKDYYAYYKTPRGYHKRSLN SNSGWNVTAATSLLNTRLFTYTNEIRNAVLVIHGDQAHSCYMSKDAYTDMIKDSKYTDNK ELLLIPGASHTDLYDQKNIIPFAKMGAFFDKYLK >gi|300496016|gb|AEAT01000127.1| GENE 19 21917 - 22555 1105 212 aa, chain + ## HITS:1 COG:L119013 KEGG:ns NR:ns ## COG: L119013 COG0702 # Protein_GI_number: 15673091 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 1 209 1 208 211 170 44.0 1e-42 MKVFIAGGSGRVAAAVIQELVNQGQQVYAGSRHKDAIVKLPGVTPLSLDLHASVSELAKL LAGMDAVYFLAGSRGKDLLQTDAFGAVKLIQAAEMAGVKRYIQLSSIFAADPDKWQGKAE FASLTDYYIAKYFADEWLINNSKLDYTILSPATLEEKAGTGKVNFKPEKFAANPIPDVAA VLAQILDKENAYGKVINMTGGETPISEAIAEV Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:44:00 2011 Seq name: gi|300496013|gb|AEAT01000128.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00164, whole genome shotgun sequence Length of sequence - 1480 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 36 - 95 4.6 1 1 Op 1 . + CDS 121 - 789 320 ## COG2452 Predicted site-specific integrase-resolvase 2 1 Op 2 . + CDS 758 - 1478 207 ## LDBND_1171 transposase Predicted protein(s) >gi|300496013|gb|AEAT01000128.1| GENE 1 121 - 789 320 222 aa, chain + ## HITS:1 COG:MJ0014 KEGG:ns NR:ns ## COG: MJ0014 COG2452 # Protein_GI_number: 15668185 # Func_class: L Replication, recombination and repair # Function: Predicted site-specific integrase-resolvase # Organism: Methanococcus jannaschii # 1 219 3 213 213 143 36.0 2e-34 MAEEYLGIKDAAKYLKVSISTLRRWEKKGLITPMRTAGNRRRYTVRQLDDMLGLNTQKEL GAVARRGLVIGYCRVSSSGQKADLERQAEVVANYCEKQGYQFRIIKDIGSGMNYKKKGLQ ELLRLVCEGGCSKIVVNYKDRLVRFGYELIETVCEEHNVDIEIINQTDDISYEEELTEDV LAIITVFSAKLYGKRSHRNEQIVAENRKLFSKDDKKETKDSN >gi|300496013|gb|AEAT01000128.1| GENE 2 758 - 1478 207 240 aa, chain + ## HITS:1 COG:no KEGG:LDBND_1171 NR:ns ## KEGG: LDBND_1171 # Name: not_defined # Def: transposase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 240 1 240 568 462 100.0 1e-129 MTRRKLRTQIKTIRAYTVRLSDDELQELDKLFNNYGRCRDLLYGQLCGINHMTDVENWRG PRDRIRQHEGKIKQARKAVRSWKKAYAENKTQNMKVPDSGTVRLARQKLLNEQFHIQGRH VTEAVKEVCMNLNSMWTNLGLKLKKIVQANESLAKEERQYLNYVFTASYYWQLILQGREN EAESSKESKYPVLRAALTKDQLRHCFGYIRRLTRKHKPYPHSSAARCMLYDEIMWKVIQK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:44:04 2011 Seq name: gi|300496012|gb|AEAT01000129.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00008, whole genome shotgun sequence Length of sequence - 988 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 20 - 640 309 ## COG4300 Predicted permease, cadmium resistance protein - Prom 806 - 865 7.1 Predicted protein(s) >gi|300496012|gb|AEAT01000129.1| GENE 1 20 - 640 309 206 aa, chain - ## HITS:1 COG:SP1625 KEGG:ns NR:ns ## COG: SP1625 COG4300 # Protein_GI_number: 15901461 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted permease, cadmium resistance protein # Organism: Streptococcus pneumoniae TIGR4 # 1 202 1 202 204 292 93.0 3e-79 MGQTIISAIGVYISTSIDYLIVLIILFAQLSQNKQKWHIYAGQYLGTGLLVGVSLVAAYI VNFVPEAWMVGLLGLIPIYLGIRFAIVGEGEEEEKEEIIERLEQSKATQLFWTVTLLTIA SGGDNLGIYIPYFASLDWAQTLVALLVFAIGVIIFCELSRVLSSIPLISETIEKYERIIV PLVFILLGLYIMYESGTIETFLNFIL Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:44:13 2011 Seq name: gi|300495977|gb|AEAT01000130.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00125, whole genome shotgun sequence Length of sequence - 24708 bp Number of predicted genes - 32, with homology - 31 Number of transcription units - 17, operones - 6 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 245 - 304 4.6 1 1 Op 1 . + CDS 474 - 1976 2302 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 2 1 Op 2 . + CDS 2067 - 2309 337 ## Ldb0952 hypothetical protein + Term 2327 - 2360 4.5 3 2 Tu 1 . - CDS 2334 - 2762 416 ## COG2200 FOG: EAL domain - Prom 2870 - 2929 1.9 4 3 Tu 1 . - CDS 2995 - 3759 500 ## LDBND_0844 hypothetical protein - Prom 3824 - 3883 3.2 + Prom 4026 - 4085 6.5 5 4 Op 1 39/0.000 + CDS 4267 - 5151 1328 ## COG0226 ABC-type phosphate transport system, periplasmic component 6 4 Op 2 38/0.000 + CDS 5171 - 6079 1249 ## COG0573 ABC-type phosphate transport system, permease component 7 4 Op 3 41/0.000 + CDS 6082 - 6957 1239 ## COG0581 ABC-type phosphate transport system, permease component 8 4 Op 4 32/0.000 + CDS 6960 - 7715 200 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 9 4 Op 5 7/0.000 + CDS 7734 - 8372 732 ## COG0704 Phosphate uptake regulator + Prom 8375 - 8434 3.5 10 4 Op 6 40/0.000 + CDS 8458 - 9135 660 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 11 4 Op 7 . + CDS 9135 - 10793 2253 ## COG0642 Signal transduction histidine kinase + Term 10810 - 10858 10.0 - Term 10798 - 10846 10.0 12 5 Tu 1 . - CDS 10875 - 11021 168 ## LDBND_0852 choloylglycine hydrolase (conjugated bile acidhydrolase) (CBAH) (bile salt hydrolase) - Prom 11072 - 11131 3.2 + Prom 10802 - 10861 3.0 13 6 Op 1 3/0.000 + CDS 11082 - 11906 736 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 14 6 Op 2 . + CDS 11935 - 12210 381 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Term 12470 - 12504 5.0 15 7 Tu 1 . - CDS 12545 - 13201 823 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 13224 - 13283 2.8 + Prom 13174 - 13233 6.3 16 8 Tu 1 . + CDS 13256 - 13456 218 ## Ldb0968 hypothetical protein - Term 13725 - 13771 9.7 17 9 Tu 1 . - CDS 13798 - 14349 645 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 14550 - 14609 6.5 - Term 14642 - 14689 9.4 18 10 Tu 1 . - CDS 14711 - 16261 2513 ## COG1288 Predicted membrane protein - Prom 16298 - 16357 4.4 19 11 Op 1 15/0.000 - CDS 16508 - 17275 227 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 20 11 Op 2 34/0.000 - CDS 17265 - 18083 223 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 21 11 Op 3 . - CDS 18062 - 18838 791 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 22 11 Op 4 . - CDS 18835 - 19449 927 ## LDBND_0863 signal transduction histidine kinase, LytS - Prom 19475 - 19534 5.4 + Prom 19486 - 19545 7.8 23 12 Tu 1 . + CDS 19733 - 20008 161 ## COG2200 FOG: EAL domain 24 13 Tu 1 . - CDS 19940 - 20197 105 ## - Prom 20357 - 20416 3.8 25 14 Op 1 . + CDS 20165 - 20866 660 ## LBUL_0891 signal transduction diguanylate cyclase 26 14 Op 2 . + CDS 20938 - 21324 503 ## COG2199 FOG: GGDEF domain 27 14 Op 3 . + CDS 21331 - 21912 964 ## LDBND_0866 hypothetical protein + Term 21928 - 21956 1.0 + Prom 21939 - 21998 5.0 28 15 Tu 1 . + CDS 22030 - 22833 1027 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 22839 - 22874 4.9 + Prom 22842 - 22901 6.2 29 16 Op 1 . + CDS 22954 - 23106 86 ## LDBND_0868 transcriptional regulator 30 16 Op 2 . + CDS 23103 - 23435 328 ## LDBND_0868 transcriptional regulator 31 16 Op 3 . + CDS 23457 - 23978 416 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Prom 24071 - 24130 5.5 32 17 Tu 1 . + CDS 24222 - 24708 -32 ## LDBND_0870 transposase Predicted protein(s) >gi|300495977|gb|AEAT01000130.1| GENE 1 474 - 1976 2302 500 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 500 41 549 549 283 34.0 6e-76 MTSAEIITMDPSKATDATSFTQMENTMEGLYQLDKDNQAKEALATKAAQSKDGLTWTFDL RKDGKWSNGQAVTAKDFVYSWQRTVNPKTASQYSYIFSGIKNADAIVAGKKAPSSLGVKA LGKYKLQVKLDHKLPYFKLLLAFPVFFPEDQTAVEKYGSKFGTSSKTTVFNGPFVQKGWT GANMSWKMVKNKNYWNKSAVKLAQINFMVEKSPSTAYNLYQDGKLDTAILSAQAAKNLQK QAGYVIRKNNGTTYMQFNTKLAKFKSTKLRQAVSMALDRKALAKTLGGGFTGATTFTAAD MTKVDGQDFTQLAQDKTTKQITSYHKTLAQKTFKEALKDLQLKKLSFTLLTADDDSSKAI GEYIQSALETAFGKQVSVKVQSLPTKSQFAKMDSGNFEACVSGWNADFADPISFLDCMTS TNGYNSGKWSNKQYDQLIAKSKTVTSSSQRMQLLAKAENILMTDQGVTPLVQSGSAWMLN TKVKGLIYNGSYYFEYAYLQ >gi|300495977|gb|AEAT01000130.1| GENE 2 2067 - 2309 337 80 aa, chain + ## HITS:1 COG:no KEGG:Ldb0952 NR:ns ## KEGG: Ldb0952 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 80 1 80 80 115 97.0 4e-25 MKDSNSFVYNVWLIILLVAAYIWPIFGLVPAIYLFIKRKDEQLEKMQGWIALALIWQVVL WLLMIIFLICFVALAGSAGK >gi|300495977|gb|AEAT01000130.1| GENE 3 2334 - 2762 416 142 aa, chain - ## HITS:1 COG:mlr5176_3 KEGG:ns NR:ns ## COG: mlr5176_3 COG2200 # Protein_GI_number: 13474317 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Mesorhizobium loti # 1 136 40 171 285 86 33.0 2e-17 MKLAECEALSRWIDPRYGFLSPDKFIPALEANREVYKADCHVLEGYGQDAEFLREKKKEI FPISFNISRTDLEACDIYQKIEDTVARYGLSRDQVHIEITESALNDSSQAMVEAVQHFHD LGYQVWMDDFGSGYSSRKPLAL >gi|300495977|gb|AEAT01000130.1| GENE 4 2995 - 3759 500 254 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0844 NR:ns ## KEGG: LDBND_0844 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 254 1 254 254 433 96.0 1e-120 MIMTVFLYQKLSPLVSLNALSAFFLATGLILLTLIPVIFLYQRLINKKPSVAVFTYCQFV IAAEISSLLANQTWQWDFFTIILTLCLYFLLKKEIRYISQEQTVITEDSRFFWSTILCMI LVVAQAEFPRMFLDGNNSAVPTPIAYVVSFLAIISCIMYIFFMKFNIFSVNRYESYLKKY DDDQLTGAKSLHYFMEYYEESLKQFGKSQSLSIFYSSPVNLHDYNLTNGYQGSSNLLKQL RPAALVKLYSSRLA >gi|300495977|gb|AEAT01000130.1| GENE 5 4267 - 5151 1328 294 aa, chain + ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 4 273 2 276 302 212 44.0 9e-55 MSRKKTKVAIVALVLLAIVIGCVIGSSEADTKGVSGTVNIAGSSALLPLAQSAAKTFMDK NPDSVINTNGGGSGQGLQQVSDGTIDIGDSDLLAEEKLDKKSANKLVDHQVAITAIAPII NKDAGVKSLTTEQLIKVFTGKVTNWKQVGGNDCQIVLVSRPSSSGTRVTFEQYALKKHAS QSNQSLETDDSGTLIQMIQSVSGSIGYVALSYLTGDPQVGIVSINGVKPSLKNVYNGKYT VWSYEHMYTKGQPKGAAKAFLQQMLSEEYGKKIEAMGYGIASKLTAAAKATHTK >gi|300495977|gb|AEAT01000130.1| GENE 6 5171 - 6079 1249 302 aa, chain + ## HITS:1 COG:CAC1706 KEGG:ns NR:ns ## COG: CAC1706 COG0573 # Protein_GI_number: 15894983 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Clostridium acetobutylicum # 16 282 17 277 296 238 50.0 1e-62 MDKVVQKAIAKDKRWRAVYIACGLLIVALTLLMGAFLLYQGSQTFLKAHHSVWEFLFTSD WAPLDKTGMFGGKVGAAIYIVGSLETCLLGLLICLPFAIGSAVFMTEISPKIGEKFFRPA TEIYVSIPSVVYGWFGLTKLVPIIRNAFHPKMGGFSVLAASIVLAIMIFPTITTVAADAI KSVPNSYREGAYGLGATRWQVIGKVVLPAASGGILTGVVLGLARAIGEALAVAMVIGKTR SFATSLLSPTSNLTSAIAADMGNTAQGGEYNLALWSMALLLFIISIVLIVLIHKLGNGKK EK >gi|300495977|gb|AEAT01000130.1| GENE 7 6082 - 6957 1239 291 aa, chain + ## HITS:1 COG:lin2640 KEGG:ns NR:ns ## COG: lin2640 COG0581 # Protein_GI_number: 16801702 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Listeria innocua # 5 286 4 290 294 222 43.0 7e-58 MSRAKRKDRLMTGIFYAIGWIMLAFLLYLTLTIIFDGLKGFQWDFLGAAGNGIFNQFFNT IYLVFLSLLVSVPIGIGAGVYLAEYAKEGKFLTIFEISIESLSSLPSIVIGLFGYLAFIM WTGMSWNILAGALTISILSIPLITTETNNAIRALPVEYKEGSLGLGATKSETIRKVLIPA AMPQILTGVIMAAGRGFGEAAALLYTSGQSTYINWQNFWKVTSPTSPLNPFRSGETLSLH IWVMRTEGALNPSATQIANFTSAVLVVLALLFTLVTRRISDRMRKRNNGGN >gi|300495977|gb|AEAT01000130.1| GENE 8 6960 - 7715 200 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 212 1 207 223 81 31 5e-15 MEDKITIEKLNLYYSDFHALHDINMHIQKNEITAFIGPSGCGKSTLLRSLNRMNDLVEGC RIDGSIKLDGTDIYNGDLDVTVLRQRVGMVFQRPNPFPMSVYDNVAYGPRIHGITDKKEL DEIVETSLKQAAIWDDLKDRLKKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP ISTSKIEELALELKKNYTIVIVTHNMQQAVRISDKTGFFLLGDLVEFGETDQLFSMPKDE RTEKYITGRFG >gi|300495977|gb|AEAT01000130.1| GENE 9 7734 - 8372 732 212 aa, chain + ## HITS:1 COG:aq_906 KEGG:ns NR:ns ## COG: aq_906 COG0704 # Protein_GI_number: 15606237 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Aquifex aeolicus # 7 209 5 209 221 103 34.0 3e-22 MRTRFDKELDHLHEAMEEIGQLCKESISESTDTLFTGNYHEAEDTINLHHRIHKAERDIE ETCLRLLMEQQPVATDLRIISASLKAVYDLERIGEIGADIADLVLNEHLTVANDMLNLKS MSQIATGMVNDAVTALANQNVELAKAVIDRDDQVDEGFDKAKAFLIDNFNRDGNPEYLIN LMMVAKYFEKIGDHAVNIAKWSLFVTTGKTGR >gi|300495977|gb|AEAT01000130.1| GENE 10 8458 - 9135 660 225 aa, chain + ## HITS:1 COG:CAC1700 KEGG:ns NR:ns ## COG: CAC1700 COG0745 # Protein_GI_number: 15894977 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 3 222 5 228 232 175 45.0 7e-44 MIEIWCVEDDESIREIEMYTLESMNFKVRGFDDGQSFFKALENSRPDLVILDLMLPDEDG SKILHRLRSTSATEDLPVIIASAKAAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLR RTNRKKEDKIEKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQ IWETGFYGETRTVDVHVRTLRHKLGEAGKHIETVRGVGYRYHEAD >gi|300495977|gb|AEAT01000130.1| GENE 11 9135 - 10793 2253 552 aa, chain + ## HITS:1 COG:CAC1701 KEGG:ns NR:ns ## COG: CAC1701 COG0642 # Protein_GI_number: 15894978 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 62 541 67 564 566 250 32.0 4e-66 MFKKIFRASFLLTSLVLLFAVLLSAIVLSIDFDHTEMSALASQADLAASGVNTSGKKYIK NLKGENYRITWINSKGKVLYDNEENPKKMGNHSRREEVAEAMKKGTGTSERYSTTLSTVT MYYAERLNDGGVIRIAITRNSFWRILVRFLSPLLLIMLLSVLVSWFLAKTISQTIVKPLN EMDLDKPLESNAYDEIKPLLTRLDSQNKQIADQMEQLHHREKELKTVTDAMLEGLILIDL DDQILLSNPAVVSLLGLHDTDPLPDDVKEIIDKNSRLAHAEGIVERNGRNIQISASPITS RKILKGTSILVVDVTEEYHEEQVRREFTANVSHELKTPLQSIMGSAELLENHLVKEEDRD SFYKKIHESSAQLLTLIDDIIRLSHLDENQRFEEIKLNLKSPVTEALEALQSSADRHGIK LETNLSDTMILANFRLVYEIAYNLIDNSIRYNKEKGKTKITVKEHRGQAILQVTDTGIGI PQEAQNRIFERFYRVDKSHSRKTGGTGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIF PALPAGADDNSK >gi|300495977|gb|AEAT01000130.1| GENE 12 10875 - 11021 168 48 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0852 NR:ns ## KEGG: LDBND_0852 # Name: cbh # Def: choloylglycine hydrolase (conjugated bile acidhydrolase) (CBAH) (bile salt hydrolase) # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: Secondary bile acid biosynthesis [PATH:lde00121]; Metabolic pathways [PATH:lde01100] # 1 48 277 324 324 99 100.0 3e-20 MNQEKGIYYYTTYGNPEVHAVDMHKTDLDGKELTSYKLQKDLQFHFDN >gi|300495977|gb|AEAT01000130.1| GENE 13 11082 - 11906 736 274 aa, chain + ## HITS:1 COG:L119564 KEGG:ns NR:ns ## COG: L119564 COG0488 # Protein_GI_number: 15672881 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 183 1 211 513 162 41.0 5e-40 MTAIQIKHLSYTYPSQAEAIFTDLSLDLDSSWKLALVGRNGRGKTTFLRLLAGQLGTQRG VKSPLTFTYYPRFLPKDEPAYFSLMDEAAFELWRLEKEMNRLNLSPDLLYQPFGQLSGGE QSKLLLALAFSQDGVFPLLDEPTNHLDGASRQEVADYLKKSNSGYIVVSHDRTFLAEVSD HVLDLNFKADYHQTLFTGRDLSLEIAGRTLFQGLDLAIASRGIVALTGPNGSGKSSFLAW LLGNKDFTCQGDWAKNQLPAPRFVKFPASFCQRA >gi|300495977|gb|AEAT01000130.1| GENE 14 11935 - 12210 381 91 aa, chain + ## HITS:1 COG:L119564 KEGG:ns NR:ns ## COG: L119564 COG0488 # Protein_GI_number: 15672881 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 88 424 511 513 111 60.0 3e-25 MKKLGLEREAFKQKIEEMSQGQKKRVALAKSLTEEASLYLWDEPANYLDLFNRDQLIKLL AKEQPAMLLVDHDQAFIEAVAKERVNLRPVL >gi|300495977|gb|AEAT01000130.1| GENE 15 12545 - 13201 823 218 aa, chain - ## HITS:1 COG:CAC3601 KEGG:ns NR:ns ## COG: CAC3601 COG0494 # Protein_GI_number: 15896835 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Clostridium acetobutylicum # 1 152 1 143 202 60 33.0 3e-09 MQEPKILPDRSKTLAATKYVKLYDLAYENGVHYYDASRRDKDQLFAFKQDPELGSALPDA VCAVIIVKEAGQKDKLLLFYEYRYPAGSYLLGLPAGLIDPADLVSPDPIKTAMIREIKEE TGLSIGEKDTVEVINPLVFTASGFSDESNAIVKAVIHVDDLSALNHKGAEGTEVFGDFKL VDKEEARRLLKEGRDDYGHYLPLVAWAALCYFVSDLWK >gi|300495977|gb|AEAT01000130.1| GENE 16 13256 - 13456 218 66 aa, chain + ## HITS:1 COG:no KEGG:Ldb0968 NR:ns ## KEGG: Ldb0968 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 66 1 66 342 115 92.0 5e-25 MRKISKFLSIVVLGLLVGGCSQGQKAKQTKTKTETKTSQKASGDLAKLSQGRDLFAWTVY WDVDKP >gi|300495977|gb|AEAT01000130.1| GENE 17 13798 - 14349 645 183 aa, chain - ## HITS:1 COG:CAC0446 KEGG:ns NR:ns ## COG: CAC0446 COG0494 # Protein_GI_number: 15893737 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Clostridium acetobutylicum # 2 155 4 151 206 92 35.0 4e-19 MEILDIVDKEGRPTGQTIERNEAHRIGAWHRCASVWIIRQKAGKWQVLLQKRSANKDSYP GCFDTSSAGHIAAGDEPLATIIRELEEELGIKSQAADFTFIGTFHNCYDKVFHQAEFKNR EVSFVHVYSKPVDENKLVLQEEEVSAVAWFDLDEVWEKAQAKDPDFCTPVGGLKLLREYL QKL >gi|300495977|gb|AEAT01000130.1| GENE 18 14711 - 16261 2513 516 aa, chain - ## HITS:1 COG:FN2106 KEGG:ns NR:ns ## COG: FN2106 COG1288 # Protein_GI_number: 19705396 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 8 515 15 518 518 433 47.0 1e-121 MLFHRSGSKKKKRKHEFPTAYSVIIIVLVLVQLLTFFIPAGNYATVSYDQSAKDFAITMP SGKVKHEPATQKTLDRYKVKIDAKKLIDGTIYKPVAIPDSYQRVNVKKPNFREAVVQFLT SQVQGIADSIDIITFILILGGIIGVVYANGAINSGMQALSEHIKGKQILLIVIVMGLIAL GGTTFGLAEETMAFYPMLIPIFLEVGYDTMTVVATIFLGTTLGTLGSTINPFSTVIASNT AGVNFARALPLRIIMLLVSLGAGMLYTIIYAEKVRKDPSKSLVYDQYEESKKKFLAFDSQ ADKGDFTWRQKLTLLTFVAGFLVMIWGVQNRGWYFTEIAVVFLAVSYLLFLVSGLSEHRF MESFVSGAADLLGVALTVGLARAVSIVMDESHTSDTIMYFFSKQITGMNKLAFVWVLFLI YIVLGFFIQSSSGLAVLSMPIMAPLANIVGVDRASVIDAYNWGQGYIGLIAPVGLILMSL AMVNIGFDRWFKFIWKQLVIQFVICLIFLGIGLLVY >gi|300495977|gb|AEAT01000130.1| GENE 19 16508 - 17275 227 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 31 233 160 363 398 92 31 3e-18 MQIKIKSLHYKYSETNFSLDIPDLTLSPGLICLVGQNGSGKSTLLKLLADLLPSGDAIKA DGQALSEYLASGRLSKIAYAFQDPNDQLFNSSVEKELAWSMKQAKLPEDEIARRTEAALK EFGLAELRDLNPYDLSLSGKKLLTIASALVLDPEVCLLDEPLMSLDYPGRCLVTRLLEKR LAQGKTVIMITHDMDWLAENCQEVYAMSQGQLVYHGPVHLLFSDQELLDRLGLLPAKTWQ LSQLLGLKPEVLSLK >gi|300495977|gb|AEAT01000130.1| GENE 20 17265 - 18083 223 272 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 11 234 134 357 398 90 31 1e-17 MSNNFQLTISQLSLRYLGFENLALENISAQSRGKRIGIIGPSHAGKSSLLALLAGIAGKM IPAKFFGSVQINGEELEAWRSQHEIALLLQDPASQLSGLADTVYDELAFSLLNQGKSDEE IESAVKRATDQLDLTNLLDQSPNQLSGGQTQRVAIATALVTEPDLLLLDDPTSQMDPLSR QHFFSWLEKLSCPFLLISNELDDLAALCDQIWVIKDGCLLMADSPQTVFNQLDDPAFDKP AAWKMAKKLELKLDGCYPVNARELKEAAENAN >gi|300495977|gb|AEAT01000130.1| GENE 21 18062 - 18838 791 258 aa, chain - ## HITS:1 COG:lin2748 KEGG:ns NR:ns ## COG: lin2748 COG0619 # Protein_GI_number: 16801809 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Listeria innocua # 12 222 15 234 265 67 29.0 3e-11 MRNNAEDLALPAWQAAIDPISKLLLILLFTLAAFAAGNLPSALIILAASFILALLTKNLH TLWGMCAFSLFLILTMLLIQGLFWPGNHTAAFSVASLTFYQEGLDHAALLACRILTIIFS SSFFIQTTTISENARYLENSGLSYQQVYVLMSVCYILPQMQENLRKIQLAQKARGIAPAK SLLSRIKNLFPVLLPLIVKSFQQAMNRSIALQLRGYASPKRRAACLTNDYWKDKFCHRLL IASCLVLLGVKACLTIFN >gi|300495977|gb|AEAT01000130.1| GENE 22 18835 - 19449 927 204 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0863 NR:ns ## KEGG: LDBND_0863 # Name: not_defined # Def: signal transduction histidine kinase, LytS # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 204 1 204 204 351 99.0 1e-95 MDSKEISSKNKDSFWSFKLSAHAMTLIPAAVGINYVAKAFAEGLKLPVWLGSLGTFLASM LAGPVAGAISGFINNVIYGLTLSPVSTVYALTSIGIGLAVAWLNQRGFFKRPVTVLPAAI LIALVSAVISTPLNVIFWSGQTGIAWGDALFASLVAKHVNIWIASFLDEFVLDLLDKTVV AYLAFLIYKQLPKRLVYFFKGTEK >gi|300495977|gb|AEAT01000130.1| GENE 23 19733 - 20008 161 91 aa, chain + ## HITS:1 COG:slr1588_2 KEGG:ns NR:ns ## COG: slr1588_2 COG2200 # Protein_GI_number: 16332199 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Synechocystis # 2 91 143 232 283 84 43.0 4e-17 MIKIEITERDLSNNTSRLKEQIDQLRSYGFEVWMDDFGSGYSSLNALNDYSFDLVKIDMV FVRHLDDGQLNRLLIPEIAKVAHKLGLKVLA >gi|300495977|gb|AEAT01000130.1| GENE 24 19940 - 20197 105 85 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNSFFISFLFHHYHITLNFTFQPCLGNNLLIFIQFNRLAEQKALQQVAARFSQEVSLLFR FDPLSQYFQTQFMGNFGDFRNQKPV >gi|300495977|gb|AEAT01000130.1| GENE 25 20165 - 20866 660 233 aa, chain + ## HITS:1 COG:no KEGG:LBUL_0891 NR:ns ## KEGG: LBUL_0891 # Name: not_defined # Def: signal transduction diguanylate cyclase # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 45 229 1 185 284 311 95.0 1e-83 MKEKGNKKTVHGLSWQFADEKEAVYADYLASEAFAREVASNNLTMGIAVSSLIAVIGFLG IFDLNSDYANISVLPVIASEWVYLFLLLANLPNLFLPLWLQKHPQAAELEIRICFANLAV NAILSGFTLYTTQEGSNYFFELVLMMMVICVFPYYKAGYGLSLVALSLLMISAIILVNHV QVAWQDAYDLFLFYVIGQACIVLRRYWFRQSSWYNYILHQASGTLFVAAGPMN >gi|300495977|gb|AEAT01000130.1| GENE 26 20938 - 21324 503 128 aa, chain + ## HITS:1 COG:aq_265_2 KEGG:ns NR:ns ## COG: aq_265_2 COG2199 # Protein_GI_number: 15605806 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Aquifex aeolicus # 1 123 43 167 168 75 36.0 2e-14 MIDLDDFKRFNDNYGHAYGDLVLTRLGRYLQKDWMNEHLRCYRYGGDEILIIAYGSEDGD FVKKLQIFQAEYAKLNQQLKEPATLSIGYATGAVADEEELRKLIQLADNYLYQAKRQGKN QVVGAEKK >gi|300495977|gb|AEAT01000130.1| GENE 27 21331 - 21912 964 193 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0866 NR:ns ## KEGG: LDBND_0866 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 193 1 193 193 357 99.0 2e-97 MYSYILKEQIKIYRYLTVDAVNAALADLRQKGISLELESTVGTAGNFVTQNDGVVDLDYQ LKLVKAAEEDPAALLTKISAGLTAGLASKFEGGRENSQALTFLHRAKKSGKVNFKLDLTI IKEEDGDEYRLVKTDGGKWSEAFNTRFLTIQEETIKDWDQWEDLREDYLRLKNADPAGLS VDLYRQAVNQIYG >gi|300495977|gb|AEAT01000130.1| GENE 28 22030 - 22833 1027 267 aa, chain + ## HITS:1 COG:Cgl0894 KEGG:ns NR:ns ## COG: Cgl0894 COG0561 # Protein_GI_number: 19552144 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Corynebacterium glutamicum # 8 267 17 276 277 143 33.0 3e-34 MEEKKKIKLIATDMDGTLVNDAKEVPASFAPWILSHPDQQMVIASGRPYYTNEELFKEIK DHLIFIGDNGGLIYQQGQVLAKAGITAEEAKFCLDLFKDEPLANPILCGASQAICHDPKG DRNFLKQLDTYYIKRRYVEDLEAEVNSDEIIKFTVYIEGGAAESIYRQLPEMPGNLSAVL AGPEWIDIVNKDANKGAAVKKIADLKGIKQDEVLAFGDYLNDLTMLEAAGTSYAMVNGHP DLKKIADHIAPSNNDEGVMQILRKLFD >gi|300495977|gb|AEAT01000130.1| GENE 29 22954 - 23106 86 50 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0868 NR:ns ## KEGG: LDBND_0868 # Name: not_defined # Def: transcriptional regulator # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 50 1 50 160 70 84.0 2e-11 MAEEELNEELFHRSMSLQRQLAQMGMRYEKLHGGVRGQNRTWPCSARMRG >gi|300495977|gb|AEAT01000130.1| GENE 30 23103 - 23435 328 110 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0868 NR:ns ## KEGG: LDBND_0868 # Name: not_defined # Def: transcriptional regulator # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 110 51 160 160 174 99.0 1e-42 MKQAELARFARVRPSSIREVVDRLERHGLIERRRDNSDHRVFRLYLTEKGREQNERNHSS WLGFVGDLMSPLSDDEKAEYLNILKKLDKQALFLEERMEEDAKKEGENHA >gi|300495977|gb|AEAT01000130.1| GENE 31 23457 - 23978 416 173 aa, chain + ## HITS:1 COG:L59135 KEGG:ns NR:ns ## COG: L59135 COG1132 # Protein_GI_number: 15672243 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Lactococcus lactis # 92 162 235 305 611 85 54.0 4e-17 MLGDLPGKSFLLVQVACDLYLPTVTANLVDKGIIGKNLPYIWQTEGKMLLVSALGLLAAF GNIYFASHQAMQVGQRLRTMLFAKVLTFSDDVSLMQPAVTLVFSLTNVGIVFLGSRLISG RIMEIGSLLTFLTYATQILMSFMMLSMLFIVIPRASVSAKRIIRCRKSAPGPG >gi|300495977|gb|AEAT01000130.1| GENE 32 24222 - 24708 -32 162 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0870 NR:ns ## KEGG: LDBND_0870 # Name: not_defined # Def: transposase # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 134 1 134 134 263 98.0 2e-69 MSSLPLFDTKNEPKIASSVEKFFKDYKVMELLRRCGLRKSKGIPLWSILSYIFSNVFRDR SMYMQQKSGKCTSGFSKNTYYRFMQNPHINWLRFTILLAEKIINEHLKDLTSDQRPNRFI TLVLKERSECHRDDQEDRQAHNRGQEADYGTIKGDRCSYPAA Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:44:48 2011 Seq name: gi|300495975|gb|AEAT01000131.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00047, whole genome shotgun sequence Length of sequence - 1278 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 43 - 96 -0.8 1 1 Tu 1 . - CDS 165 - 1238 669 ## LA2_04410 IS4 family transposase Predicted protein(s) >gi|300495975|gb|AEAT01000131.1| GENE 1 165 - 1238 669 357 aa, chain - ## HITS:1 COG:no KEGG:LA2_04410 NR:ns ## KEGG: LA2_04410 # Name: not_defined # Def: IS4 family transposase # Organism: L.amylovorus # Pathway: not_defined # 2 357 103 455 456 391 53.0 1e-107 MNLASLKLYNDEYRLFAIDGSDFNQVWNPKSENIVCFEDSNRKPYCQVHLNALYDLENKI YQDCVIQPKNKMDERKAAVEMLSRLECGKYIVLVDRGYLSFNMIQHCNVNKDCYYVIRSK TGFTAIKEISQLPDEEYDGILDCWVTTSNHFYTQNKDHLNIHLVNHVNHQYKKFKSKNSK DNSWDFKQFCHVRFRVCKFRINPDDAPNKEQWEVLVTNLDADKFPLERMKELYNLRWGIE KSFKMLKYDDCGIQFHSKKDEFVKMELYAHLIAYNVIMSMVNQAYAPHPKSKSNSEYQIN LSMAFFIVHFLLGTGSPKKDYETMLYMISRFAGIIRPNRNYQRKMHPRSAVVFNYRL Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:44:54 2011 Seq name: gi|300495974|gb|AEAT01000132.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00004, whole genome shotgun sequence Length of sequence - 742 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:44:54 2011 Seq name: gi|300495973|gb|AEAT01000133.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00138, whole genome shotgun sequence Length of sequence - 593 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:44:56 2011 Seq name: gi|300495966|gb|AEAT01000134.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00074, whole genome shotgun sequence Length of sequence - 4109 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 92 - 139 7.6 1 1 Op 1 . - CDS 144 - 578 337 ## Ldb2163 hypothetical protein 2 1 Op 2 . - CDS 621 - 1052 538 ## LDBND_2007 hypothetical protein - Prom 1112 - 1171 4.1 + Prom 931 - 990 4.7 3 2 Op 1 . + CDS 1074 - 2114 864 ## COG0515 Serine/threonine protein kinase 4 2 Op 2 . + CDS 2209 - 2643 614 ## LDBND_2009 hypothetical protein + Term 2797 - 2843 8.8 + Prom 2853 - 2912 8.1 5 3 Tu 1 . + CDS 2977 - 4068 1531 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein Predicted protein(s) >gi|300495966|gb|AEAT01000134.1| GENE 1 144 - 578 337 144 aa, chain - ## HITS:1 COG:no KEGG:Ldb2163 NR:ns ## KEGG: Ldb2163 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 142 1 142 187 189 95.0 2e-47 MNSLFWVNLLIGCGMLLSGFKQLPVTFSWRKLAVIFLASGSLLLVEGMLVRKVFETAQVL FVIAVLYLLLGLAGLVMMFVKKDRQAFTSEDWRDFAAVLIISALLAFYFFRDAAFDLSSM LLPEAMFLAGLLLVSWAVKAEKNA >gi|300495966|gb|AEAT01000134.1| GENE 2 621 - 1052 538 143 aa, chain - ## HITS:1 COG:no KEGG:LDBND_2007 NR:ns ## KEGG: LDBND_2007 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 8 143 1 136 136 219 98.0 3e-56 MVTMGVKMETEKLLAALKADHISNVLDQVADYNFAGYLNKLIEDKGVKKSDLFNEAMIER SYGYQILKGRRLPARNKVLSLALSLKLSLAETNRLLSLSDNGALYANVKRDAVLIYCLVR GMSVIDTDQQLANYGYQSLNEEE >gi|300495966|gb|AEAT01000134.1| GENE 3 1074 - 2114 864 346 aa, chain + ## HITS:1 COG:lin0627 KEGG:ns NR:ns ## COG: lin0627 COG0515 # Protein_GI_number: 16799702 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Listeria innocua # 35 330 39 374 383 132 30.0 9e-31 MKQGKISDYVNPVPIKITDDKAIFKVEKLVPTPYIERVLPLEYAPLYEQLAELDTAIPKI VCLEKSDRLTVIEEYIDSPRLDQYLETHKLTSAQIHDLICQLLDVLAVLHQQTPPIIHRD IKPENIFYDGKKLILADFDIARNMQEDADRDTRILGSVGYAAPEQFGFSQSGPASDFYAV GVLMNVLYTGYLPSVRLYKGPEREIIEKATHINSQKRYQSAQEFKDAITDLGRSSWLLPG FRSHQPARMLTAGCGYLLMLFSSFSMDAKSDSAADSFLLRLSFFMVLFLIVLFACNYRNI KSMCLFHSSKSKFTRACGIIISYLLVATVLTTALAALSVAISSFGN >gi|300495966|gb|AEAT01000134.1| GENE 4 2209 - 2643 614 144 aa, chain + ## HITS:1 COG:no KEGG:LDBND_2009 NR:ns ## KEGG: LDBND_2009 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 141 1 141 198 195 100.0 6e-49 MAKQIKDENGNVYVQKKKFYKRWWFWLLVVLVVVFLGSGAFGGSSDSDSSSDSAAKSQTS SKKKAEANPLNKVYSVGQKASYKGYEIKVNSVKFSQGSEYNRPDSGKQFVIINITITNHT DESQDYNPFDFKLNADGNNTDHRC >gi|300495966|gb|AEAT01000134.1| GENE 5 2977 - 4068 1531 363 aa, chain + ## HITS:1 COG:lin1425 KEGG:ns NR:ns ## COG: lin1425 COG1744 # Protein_GI_number: 16800493 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Listeria innocua # 9 357 8 355 357 258 42.0 1e-68 MSVSKFKKLATIATAAVSVLLTACQGKKSSSSTGTKTTKHSIALITDNNAIDDHSFNEAA WNGFKAFGKKHGLKQGKGGYQYFESSSAADFTPNANEAASSGFETIFGVGYQLTSAIKSA AKKNPKKNFVIIDDVISGQKNVASVTFESNQASYLAGIAAAYTTKTNHVGYIGGAKSATL ELFEAGFKQGVEAGAKALGKKIKIDDQYIGNFTSTDKAKSIAQSMYASGADIIYHAAGNA GNGVFTEAKDINKSRKASKKVWVIGVDVDQSSLGSYTSKDGKKSNFVLTSVLKGLDVAVE RIAEKAYQGKFPGGKHFVYTLEGNGVSVTKGNIDSKTWSKVQAARKQILNGKVKVAESVS DLK Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:45:27 2011 Seq name: gi|300495894|gb|AEAT01000135.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00011, whole genome shotgun sequence Length of sequence - 70376 bp Number of predicted genes - 72, with homology - 71 Number of transcription units - 29, operones - 19 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 27 - 86 5.8 1 1 Tu 1 . + CDS 119 - 1762 1868 ## COG1418 Predicted HD superfamily hydrolase + Term 1767 - 1806 5.3 + Prom 1782 - 1841 6.1 2 2 Tu 1 . + CDS 1866 - 3065 1891 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase + Term 3087 - 3122 6.0 - Term 3075 - 3110 6.0 3 3 Tu 1 . - CDS 3118 - 3885 647 ## COG1739 Uncharacterized conserved protein + Prom 3730 - 3789 3.7 4 4 Op 1 6/0.000 + CDS 3821 - 5098 1418 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) 5 4 Op 2 6/0.000 + CDS 5143 - 5781 457 ## COG1040 Predicted amidophosphoribosyltransferases 6 4 Op 3 7/0.000 + CDS 5861 - 6418 941 ## PROTEIN SUPPORTED gi|116513711|ref|YP_812617.1| ribosome-associated protein Y (PSrp-1) + Term 6459 - 6500 4.1 + Prom 6481 - 6540 8.0 7 4 Op 4 6/0.000 + CDS 6578 - 8980 3642 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) + Term 8981 - 9036 9.9 + Prom 8999 - 9058 2.6 8 5 Op 1 . + CDS 9187 - 10185 1389 ## COG1186 Protein chain release factor B 9 5 Op 2 . + CDS 10196 - 10498 342 ## Ldb0609 hypothetical protein 10 5 Op 3 10/0.000 + CDS 10473 - 11432 1513 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism 11 5 Op 4 . + CDS 11432 - 12265 1144 ## COG0682 Prolipoprotein diacylglyceryltransferase 12 5 Op 5 . + CDS 12271 - 13287 1495 ## COG0240 Glycerol-3-phosphate dehydrogenase 13 5 Op 6 . + CDS 13359 - 14291 523 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 + Term 14301 - 14335 4.3 + Prom 14321 - 14380 3.5 14 6 Op 1 7/0.000 + CDS 14413 - 16455 3023 ## COG0556 Helicase subunit of the DNA excision repair complex 15 6 Op 2 . + CDS 16445 - 19303 4053 ## COG0178 Excinuclease ATPase subunit + Prom 19309 - 19368 5.4 16 6 Op 3 . + CDS 19400 - 19942 908 ## LDBND_0558 hypothetical protein + Term 19953 - 20000 10.1 + Prom 19955 - 20014 6.8 17 7 Op 1 1/0.222 + CDS 20065 - 20868 1051 ## COG2362 D-aminopeptidase 18 7 Op 2 . + CDS 20877 - 21935 899 ## COG3191 L-aminopeptidase/D-esterase + Prom 21950 - 22009 6.6 19 8 Op 1 12/0.000 + CDS 22037 - 22915 1368 ## COG1660 Predicted P-loop-containing kinase 20 8 Op 2 12/0.000 + CDS 22925 - 23944 1374 ## COG0391 Uncharacterized conserved protein 21 8 Op 3 . + CDS 23952 - 24884 1469 ## COG1481 Uncharacterized protein conserved in bacteria + Term 24903 - 24942 7.1 - Term 24890 - 24929 4.1 22 9 Tu 1 . - CDS 24952 - 25536 934 ## COG0740 Protease subunit of ATP-dependent Clp proteases - Prom 25667 - 25726 5.1 + Prom 25603 - 25662 6.2 23 10 Tu 1 . + CDS 25720 - 27216 2414 ## LBUL_0560 hypothetical protein + Term 27364 - 27404 2.0 + Prom 27472 - 27531 6.6 24 11 Op 1 9/0.000 + CDS 27575 - 28555 1594 ## COG2984 ABC-type uncharacterized transport system, periplasmic component 25 11 Op 2 13/0.000 + CDS 28574 - 29470 1413 ## COG4120 ABC-type uncharacterized transport system, permease component 26 11 Op 3 . + CDS 29463 - 30227 203 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 + Term 30282 - 30313 4.1 - TRNA 30310 - 30384 41.7 # Arg CCG 0 0 + Prom 30412 - 30471 5.5 27 12 Op 1 5/0.000 + CDS 30576 - 31724 864 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain 28 12 Op 2 26/0.000 + CDS 31762 - 32778 1218 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase + Term 32814 - 32858 10.6 29 13 Op 1 13/0.000 + CDS 32874 - 34085 1910 ## COG0126 3-phosphoglycerate kinase 30 13 Op 2 . + CDS 34104 - 34862 1194 ## COG0149 Triosephosphate isomerase + Term 34886 - 34914 1.0 + Prom 35256 - 35315 4.4 31 14 Tu 1 . + CDS 35336 - 35902 716 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 36012 - 36069 4.0 - Term 35789 - 35835 9.1 32 15 Op 1 . - CDS 35859 - 36428 727 ## LDBND_0575 hypothetical protein 33 15 Op 2 . - CDS 36425 - 37309 1460 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 37399 - 37458 5.8 + Prom 37291 - 37350 6.0 34 16 Op 1 . + CDS 37471 - 38154 800 ## COG0692 Uracil DNA glycosylase 35 16 Op 2 . + CDS 38175 - 39164 1635 ## COG0280 Phosphotransacetylase 36 16 Op 3 . + CDS 39175 - 39660 539 ## COG0802 Predicted ATPase or kinase + Term 39706 - 39740 4.5 - Term 39688 - 39734 13.0 37 17 Tu 1 . - CDS 39737 - 40273 854 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases - Prom 40327 - 40386 5.7 + Prom 40310 - 40369 3.1 38 18 Op 1 3/0.111 + CDS 40396 - 41289 1278 ## COG0812 UDP-N-acetylmuramate dehydrogenase 39 18 Op 2 30/0.000 + CDS 41330 - 42418 1524 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 40 18 Op 3 36/0.000 + CDS 42421 - 43233 1051 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 41 18 Op 4 25/0.000 + CDS 43230 - 44033 1183 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 42 18 Op 5 . + CDS 44030 - 45112 1877 ## COG0687 Spermidine/putrescine-binding periplasmic protein 43 18 Op 6 7/0.000 + CDS 45144 - 45983 1436 ## COG1624 Uncharacterized conserved protein 44 18 Op 7 6/0.000 + CDS 45983 - 46933 1086 ## COG4856 Uncharacterized protein conserved in bacteria 45 18 Op 8 . + CDS 46957 - 48309 2126 ## COG1109 Phosphomannomutase + Term 48334 - 48392 15.4 + Prom 48367 - 48426 4.9 46 19 Op 1 . + CDS 48458 - 49270 1280 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 49273 - 49315 7.9 47 19 Op 2 . + CDS 49322 - 50296 753 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 48 19 Op 3 1/0.222 + CDS 50375 - 50818 525 ## COG3682 Predicted transcriptional regulator 49 19 Op 4 2/0.111 + CDS 50812 - 51186 583 ## COG4633 Uncharacterized protein conserved in bacteria 50 19 Op 5 . + CDS 51186 - 53102 2147 ## COG2217 Cation transport ATPase + Term 53139 - 53176 6.1 + Prom 53156 - 53215 7.5 51 20 Op 1 11/0.000 + CDS 53255 - 53644 411 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 52 20 Op 2 . + CDS 53649 - 54008 574 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 53 20 Op 3 . + CDS 54005 - 54754 849 ## Ldb0663 hypothetical protein + Term 54768 - 54804 2.4 + Prom 54819 - 54878 5.2 54 21 Op 1 . + CDS 54983 - 56017 786 ## COG2199 FOG: GGDEF domain + Prom 56049 - 56108 2.4 55 21 Op 2 . + CDS 56146 - 56556 409 ## LDBND_0598 hypothetical protein + Term 56557 - 56594 5.5 + Prom 56558 - 56617 5.6 56 22 Op 1 . + CDS 56641 - 57099 572 ## COG0394 Protein-tyrosine-phosphatase + Prom 57115 - 57174 2.0 57 22 Op 2 . + CDS 57196 - 57852 999 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Term 57870 - 57903 6.1 - Term 57858 - 57891 6.1 58 23 Tu 1 . - CDS 57939 - 59570 2452 ## COG0531 Amino acid transporters - Prom 59682 - 59741 8.0 59 24 Op 1 . + CDS 59830 - 60357 844 ## COG0225 Peptide methionine sulfoxide reductase 60 24 Op 2 . + CDS 60406 - 61221 1022 ## COG4667 Predicted esterase of the alpha-beta hydrolase superfamily + Term 61232 - 61271 0.6 - Term 61210 - 61272 12.4 61 25 Tu 1 . - CDS 61307 - 62188 1564 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Prom 62225 - 62284 5.5 + Prom 62195 - 62254 5.4 62 26 Op 1 . + CDS 62295 - 62816 773 ## LDBND_0607 integral membrane protein + Prom 62820 - 62879 2.9 63 26 Op 2 . + CDS 62899 - 63630 1068 ## COG0217 Uncharacterized conserved protein + Term 63657 - 63693 2.2 + Prom 63640 - 63699 7.1 64 27 Op 1 24/0.000 + CDS 63816 - 64760 621 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 65 27 Op 2 6/0.000 + CDS 64732 - 65730 1133 ## COG1459 Type II secretory pathway, component PulF 66 27 Op 3 . + CDS 65752 - 66075 448 ## COG4537 Competence protein ComGC 67 27 Op 4 . + CDS 66072 - 66509 285 ## LDBND_0612 competence protein comgd 68 27 Op 5 . + CDS 66457 - 66765 197 ## Ldb0683 hypothetical protein 69 27 Op 6 . + CDS 66731 - 67351 436 ## LBUL_0615 hypothetical protein + Term 67414 - 67454 -0.4 + Prom 67407 - 67466 4.6 70 28 Op 1 7/0.000 + CDS 67494 - 68492 1128 ## COG0827 Adenine-specific DNA methylase 71 28 Op 2 . + CDS 68526 - 69713 2028 ## COG0282 Acetate kinase + Term 69735 - 69785 13.1 72 29 Tu 1 . + CDS 70072 - 70254 177 ## Predicted protein(s) >gi|300495894|gb|AEAT01000135.1| GENE 1 119 - 1762 1868 547 aa, chain + ## HITS:1 COG:lin1436 KEGG:ns NR:ns ## COG: lin1436 COG1418 # Protein_GI_number: 16800504 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Listeria innocua # 9 547 3 520 520 458 54.0 1e-128 MMNNTIFLLATVAVIFLISLVVGCLIGYAIRKNAWETKAENARQSAEAILAKAKAEVEVA KAEVQAQKQAAEAVKRDAETEKKAKILEAQEEIRDYRQKVEDELNRRRDEAARKENRLQQ KEDTLDHRSSLLDDREKQLTQRKDQIKQQEEKAAGLLEEAHGLVEKQKDKLLEISRLDEE EAKKIVLAQVSDHLTKEKAELIRANEEEISARADRFARQIIVDAIQSSAADTVVETTVSV VDLPNDDMKGRIIGREGRNIRSFEAMTGVDLIIDDTPKTVTLSGFDSIRREVAKRALQKL IKDGRIHPARIEEMVDKARKEVNDDIYEAGESALMELGIHRMNPELVKILGRLKYRTSYG QNVLAHSIEVGKLAGTMAAELGLDEKLAVRAGLLHDIGKAIDHDIEGSHVEIGVELTRKY HEPDLVVNAIAAHHGDVPKLSFIADLVVAADTISSARPGARSESLENYIRRLTELEDIAG SYDGVKQAYAIQAGREVRVMVEPGKISDDETTVLAHEIRDRVEKELDYPGNIKITVIREK RAVAVAK >gi|300495894|gb|AEAT01000135.1| GENE 2 1866 - 3065 1891 399 aa, chain + ## HITS:1 COG:L35751 KEGG:ns NR:ns ## COG: L35751 COG0472 # Protein_GI_number: 15673776 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Lactococcus lactis # 9 348 14 382 443 328 47.0 9e-90 MFKIIVDLFLLVIIQVAITPFIRRLAFVLGAVDNPNARRVNKKPMPTIGGLGIFVTYNIG TFILLREQFPTHELFALLLASSVIVLTGMIDDILELKPGQKMGGIFIAAMIIYFLAEIRM TELNIPFTGQTINLPWYLSLPITIFWILALTNAVNLIDGLDGLAAGVSCISLLTMGIVGY FFLRNQGLYVPIACFMLAACLLGFLPYNFNPAKIFLGDTGALYLGFMISVLALKGLKNVT FISLLVPVIILGVPISDTVYAMIRRKLNKKPISQADKHHLHHQLMNLGLTQRQTVLVIYA LSLIFSFVSMLFLLSPIWAMALLLVGLLIAVELFVESIGLLGEKYKPLSHLINRLVLHST HTKEPDVEVWLQGEAKPRKWQERSKGGHKPAEKNSGKKQ >gi|300495894|gb|AEAT01000135.1| GENE 3 3118 - 3885 647 255 aa, chain - ## HITS:1 COG:L98095 KEGG:ns NR:ns ## COG: L98095 COG1739 # Protein_GI_number: 15673073 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 44 246 3 205 209 185 47.0 6e-47 MLLSTLSTSHWRPARDSFSSVIFLPPLTNTPKRDDFLSKEADFLTIKENGQHELVIKKSR FIATLARVQDEEEARDFIAATSKKYHDATHNTYAYTLGINDDRVKSSDNGEPAGTAGVPE LKTLQLMGLKNVAVVVTRYFGGIKLGAGGLIRAYSSSVSEAAEAIGIVKRVKQQELIFTI PYNRYDKVDHFLKEKEVFVAGTEYGVNITISIYLDLDQIDPFISDLTELLNGEPDLIKGD QRCNEIPVKSGEKRF >gi|300495894|gb|AEAT01000135.1| GENE 4 3821 - 5098 1418 425 aa, chain + ## HITS:1 COG:SP2208 KEGG:ns NR:ns ## COG: SP2208 COG4098 # Protein_GI_number: 15902015 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Streptococcus pneumoniae TIGR4 # 10 423 9 427 432 295 41.0 1e-79 MTEEKESLAGRQWLVDKVDNSIKEGQTAIPAIENGICQRCGSSCWARLPSGFLYCRACVG LGRLDEGKLLVRQAAGSHYPARAGMTWTGQLQERQEGVSRFLLEKFAAKEDCLVEAVTGA GKTEMIFPLLAEAFSRGCRVAIATPRIDVVNELYPRLVAAFGEVEIGKYHGREEKEAANE QLVICTTHQLLKYYQAFDLLIIDEIDSFPYAGNPQLHFAAGNAVKKTGSRVFLTATPPED LLKAARQGKLAIVRLNRRFHGYPLPVPRLDLYVKPFLTKGRLHPKLARRIKMAAKSGHPL LVFLPRIAQMPQYFAAVKRLLPDLRLSTVYAQDPDRLEKVEKFRKGDLDLLLTTTILERG VTFKHVWVIIVAADDEIYSAASLVQIAGRVGRDKQDPDGLVLFCYRRYSRQIRSAVKQIK EMNWG >gi|300495894|gb|AEAT01000135.1| GENE 5 5143 - 5781 457 212 aa, chain + ## HITS:1 COG:SP2207 KEGG:ns NR:ns ## COG: SP2207 COG1040 # Protein_GI_number: 15902014 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 5 212 19 220 220 110 33.0 2e-24 MRRLLLPGKSKTSCLCPSCRQQFAQIGPAFCPQCGRQQDSGEICQDCQKWRRIYQGNFLH NQAVYCYNQAFHDLMVRYKRYGDYLLCQVLQELAAPAVQKLAADYYVPVPTSPEHREKRG YDTVWEIFTPLLPLTPLLAKKARAGAQGEKDKKARMQAKQNFFLNPEFRGTITGKIILLD DIYTTGRTLYHARDAIETAFPKCQVESFSISR >gi|300495894|gb|AEAT01000135.1| GENE 6 5861 - 6418 941 185 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116513711|ref|YP_812617.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] # 1 185 1 185 185 367 99 1e-100 MLKYNVRGENIEVTEALRDYVEKRLTKLEKYFDLSQDVIAHVNLKVYRDHSAKVEVTIPL PYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSREKGVEEFFIPEEAPVEEEK EEKAPMFKIVRNKRVNLKPMDPEEAILQMDMLEHDFFVFQDAETNGTSVVYRRNDGSYGL IETNE >gi|300495894|gb|AEAT01000135.1| GENE 7 6578 - 8980 3642 800 aa, chain + ## HITS:1 COG:SPy1805 KEGG:ns NR:ns ## COG: SPy1805 COG0653 # Protein_GI_number: 15675639 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Streptococcus pyogenes M1 GAS # 1 794 1 781 839 1008 66.0 0 MANILKKLYNADKRELKRFEKIADQVESYADQMAALSDEELQAKTPEFRSRIEKGESLDD LLPEAFAVSREASKRVLGLYPFRVQILGGIALHRGNIAEMMTGEGKTLTATMPVYLNALS GKGVHVVTVNEYLSSRDETEMGQLYRWLGLTVGLNLSTMSPEEKREAYACDVTYSTNSEL GFDYLRDNMVVYKEQMVQRPLNYAIIDEVDSILIDEARTPLIISGEAEQANADYVRADRF VKKLVEDKSDNDADDDEDHGDYKIDWPTKTISLTRTGIQKACDHFGLKNLYDVENQKLVH HIDQALRANYIMLKDIDYVVQDGEVLIVDSFTGRVMEGRRYSDGLHQAIEAKEGVKIQEE SQTQATITYQNYFRMYQKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRQDMPDLLY PTLDSKFKAVVDEIKERHAKGQPILVGTVAIESSERLSHMLDKEHIPHAVLNAKNHAKEA AIIMNAGQRGAVTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGR QGDPGYTRFYLSLEDDLLKRFGGDRVKDFLDRLSDNDDDKVIESRLITHQVESAQKRVEG NNYDTRKQTLQYDDVMRIQREIIYKERMQVIDEQQSLKSVLMPMIHRTIDHQVDMFTQGD RSTWRLDSLRDFIVSSLASEEYVDSEIDFKTFTPDALKQQLYQLVEDNYQEKEAALADPE QMLEFEKVVILRVVDEHWTNHIDAMDQLRQSIGLRGYGQLNPLVEYQDSGYNMFEEMISD IEFDVTRLFMKAQIRNNLSR >gi|300495894|gb|AEAT01000135.1| GENE 8 9187 - 10185 1389 332 aa, chain + ## HITS:1 COG:lin2653 KEGG:ns NR:ns ## COG: lin2653 COG1186 # Protein_GI_number: 16801714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Listeria innocua # 1 326 1 326 327 374 57.0 1e-103 MAEPGFWDNQEKAQKLISETNLLKEKRDSFLALEKDLTDEETALELLRLEADADLQKDTE DQLAKLQEEFHQYELNLLLSGEYDDHNALMEIHPGAGGTEAMDWGNMLLRMYQRYCDSRG LKFEVNNFEPGDEAGLKSVSVRISGKNAYGLLKSEHGVHRLVRISPFDSAKRRHTSFASV EVIPEVDDSIEIDIDPKDLRIDVYRSSGAGGQHINKTSSAVRITHIPTGIVTTSQAQRSQ FQNRDTAMNEMRAKLFHLEEEKKRKEKAALKGEQLDIAWGSQIRSYVFHPYSMVKDHRTG YETADVGGVMDGKLDPFIYAYLQWRLSQENPE >gi|300495894|gb|AEAT01000135.1| GENE 9 10196 - 10498 342 100 aa, chain + ## HITS:1 COG:no KEGG:Ldb0609 NR:ns ## KEGG: Ldb0609 # Name: mp1 # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 1 100 1 100 100 166 99.0 3e-40 MSFTTIILLVLAAVVALALLSVFFKALIALLPVGLVVILLLWLYYRFYWRKKYKLPSRPE PDRFKPGQADPERPRKQAQDVTVRDVDDSEVHDDEHGKTN >gi|300495894|gb|AEAT01000135.1| GENE 10 10473 - 11432 1513 319 aa, chain + ## HITS:1 COG:L4822 KEGG:ns NR:ns ## COG: L4822 COG1493 # Protein_GI_number: 15672600 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Lactococcus lactis # 13 311 10 308 309 297 50.0 2e-80 MTNTVKLTELINDNSNLRVLQGQECVAGKKITVSDVYRPGLELSGYFDFYPADRVQLLGR TEISYAARLDHDLRRKVFEKICQKETPCVLVSRNLPVPVELKEAAEAAGTPILISNDATT YLMSMITQYLAVKLAERSSVHGVLVEVFGMGVLLTGESGVGKSETALALVQHGHRLIADD RVDVYQRDHETVVGEAPRILKHLMEIRGIGIIDVLKLFGIGAIKDETEISLVINLTNWNS KANYDRLGFQENTRIICGIAVPQVTIPVKVGRNMENIVEVAVMNFRAKAMGFDAAKTFDE NLTSLIAENSEEEKGGKAD >gi|300495894|gb|AEAT01000135.1| GENE 11 11432 - 12265 1144 277 aa, chain + ## HITS:1 COG:lin2625 KEGG:ns NR:ns ## COG: lin2625 COG0682 # Protein_GI_number: 16801687 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Listeria innocua # 5 267 8 267 277 261 50.0 8e-70 MTLALNPIAFSIGDIHVRWYGIIIACGILLATFMSIREGQRRQIMSDDFIDLLLWGVPIG FIGARIYYVIFEWGYFSQHPDEIIAIWNGGIAIYGGLIAGAIVLLVFCYRRFLSPFLVLD IVAPGVMAAQVLGRWGNFMNQEAHGAKCSLQYLQNLHLPQFIIDQMYINGSYYKPTFLYE SFFNLIGLIIILSLRHKKHLFKQGEVFMLYLAWYSVVRFFVEGMRTDSLYIFGVIRVSQA LSLLLLIAVVILFVYRRVKVKPKWYLEGSGLKYPYER >gi|300495894|gb|AEAT01000135.1| GENE 12 12271 - 13287 1495 338 aa, chain + ## HITS:1 COG:SP2091 KEGG:ns NR:ns ## COG: SP2091 COG0240 # Protein_GI_number: 15901906 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 4 335 6 334 338 325 50.0 1e-88 MTKISVLGAGSWGSVLASMLADNGHEVALYAHRQVIADEINQDHTNLHYMKDWTLNPSVW ASTDMGQVLKDCDVILFAVPTSAIRSVAKAVRQVLDENGRQPYLVSATKGIEPGTKKLVL QIFKDEIYPDGFDKMIVLSGPSHAENTAQKDLTAITLASTSLDNAAKMQKIFSNDYVRFY TSNDPIGVQVGGAVKNVIAIAAGILAGLGYGDNAKAALMTRGLTEITRLGVAFGGQPWTF SGLSGIGDLIVTCTSVNSRNWRCGYQLGQGKPLDEVLANMGQVVEGATTVKAVYEICDKY SLDMPISASIYKVLYEGAKIDDEIKLMMSRQMGPEIRI >gi|300495894|gb|AEAT01000135.1| GENE 13 13359 - 14291 523 310 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 6 303 3 303 306 206 38 4e-52 MTKEVDVVIIGAGPAGMTAAVYAARANLKTVLLDRGIYGGQMNNTADIDNYPGFVEVQGP ELGEKMYQTVQNAGASYEYGDVQAVKLEGDYKRVITDSEEYLAPAVIIATGSEHKHLNVP GEETYSGHGVSYCAVCDAAFFRDEDVTVIGGGDSAIQEGLYLAQSAKSVTVVHRRDQLRA KPELQEKAFKHPKIKFVWNALTEEIVGEDGKVSGIRYKDKVSGEEKEFATKGVFIYVGVL PVTKALDGLDILDENGWIPTDELMRTRQEGIFAAGDVRPKDLRQVTTAVGEGSVAGQEAY NYLQAKGFLK >gi|300495894|gb|AEAT01000135.1| GENE 14 14413 - 16455 3023 680 aa, chain + ## HITS:1 COG:SP1238 KEGG:ns NR:ns ## COG: SP1238 COG0556 # Protein_GI_number: 15901100 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Streptococcus pneumoniae TIGR4 # 1 664 1 660 662 904 69.0 0 MIKRQDNNKFELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAK MNKPTLVITHNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASI NDEIDQLRHAATSALMSRNDVIVVASVSCIYGLGDPREYAASVLNVYTGQEYERNTLLRD LVNIQYDRNDIDFQRGRFRVRGDVVEVFPAGYSDRAYRIEFFGDEIDRIVEVDPLTGEVH GVRDSISLFPATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLE MLREVGYTNGIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDR NRKQTLIDYGFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNQTSRIVEQVIRPT GLLDPKIEVRPIEGQIDDLVAEINLRIERKERVFVTTLTKKMAEDLTDYLKDLGIKVRYL HSDIKTLERMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLI QTMGRAARNANGEVIMYADRITDSMKLAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDM ISVVKADKEAEKSDSFADLNFDELTAKQKKQMIANLKEQMQDAAKRLDFESAANLRDAII ELEGSVRKPIKKKGKDFNGR >gi|300495894|gb|AEAT01000135.1| GENE 15 16445 - 19303 4053 952 aa, chain + ## HITS:1 COG:SP0186 KEGG:ns NR:ns ## COG: SP0186 COG0178 # Protein_GI_number: 15900123 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Streptococcus pneumoniae TIGR4 # 5 931 4 937 943 1300 69.0 0 MADRKIVIRGAREHNLKDIDVTIPKDQLVVITGLSGSGKSSLAFDTLYAEGRRRYVESLS SYARQFLGQMDKADVDSIDGLNPAISIDQKTTSHNPRSTVGTVTEINDYLRLLWARVGHP YCPNDGTLIQRQSVDQMVTRILDLPERSKIQLLSPVIRGKRGEHKEVFARIRRAGYVRVI VDGELHDASEEFALEKNKRHDIEIVVDRLVIKDGIRSRLFDSAEAALRLSEGYMDVDVIG GEKLSFSEYYACPLCGFTVGEMEPRLFSFNAPFGACPACDGLGMKLAVDPDLVVPDKDKS LAEGALAPWAGSKYYMGMLEQACAALKIPMDKPFKKLTKRQRDIILNGSDKEIHFHLEGD FGVNDTKQPFEGVINNVDRRYAKPMSKFMQEVMGKYMTELPCEVCGGKRLNEKALAVKVN GKNLAEASDLSIKDGLAFFKAVDLSEQEAAIAKPILKEVCDRLNFLVSVGLDYLTLSRSA GTLSGGEAQRIRLATQIGSNLSGVMYVLDEPSIGLHQRDNDRLIASLKRMRDLGNSLIVV EHDDETMRAADYLIDMGPGAGSQGGEVMAAGTPEEVMANPKSLTGQYLRGEKFIPVPLKR RKGSGKKLKLTGAAENNLKNISVEFPLSEFVVVTGVSGSGKSTLVNQILKRVLAQKLNHN SAKPGKYDKLTGWKNIEKVIDIDQSPIGRTPRSNPATYTSVFDDIRTLFAQTNEAKMRGY TKARFSFNVKGGRCETCHGDGILKIEMNFLPDVYVPCEVCHGQRYNSETLEVTYREKNIA QVLDMTISEACDFFVNIPKIHRKLQTIVDVGLGYVKLGQPATTLSGGEAQRMKLASELQK LSTGKNFYILDEPTTGLHTDDIKRLLEVLQRLVDQGNTVLVIEHNLDVIKTADWLIDLGP NGGERGGQVVCTGTPEEVADCPESWTGKYLKPVLGRDKALTESSLANKEKES >gi|300495894|gb|AEAT01000135.1| GENE 16 19400 - 19942 908 180 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0558 NR:ns ## KEGG: LDBND_0558 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 180 1 180 180 260 98.0 1e-68 MFDSVYNEKRGFDWGVFIAGVISVVLSIFLFANPGKGLRGLVIVLAVLLIMQGSAWISMY AGFHGIFGPSWTTLLSGIFDILIGIFFLWDNKVGAYTIAILVAIWFIVDSVIGIVFAWHL RFFETGWYFFFNLLLNILGLVVGVMLLLRPIIAVMSTVYLIAIYLMIFGINEIALAFMHR >gi|300495894|gb|AEAT01000135.1| GENE 17 20065 - 20868 1051 267 aa, chain + ## HITS:1 COG:mll6661 KEGG:ns NR:ns ## COG: mll6661 COG2362 # Protein_GI_number: 13475561 # Func_class: E Amino acid transport and metabolism # Function: D-aminopeptidase # Organism: Mesorhizobium loti # 4 264 2 264 265 179 39.0 5e-45 MEKKIYISCDMEGCAGVTSWEQTHYGHKGYDLALKEMTRETVAAVKACQQAGYQVTVKDG HEDGINLDPALLPAGTELIQGWDSSPEEMMAGISTDYAGAIHIGSHSPAGSSETPLDHTV EHGWYSWVKLNGELASEFTFNSLCAAQYGVPSLFLAGDAGICRRAEDFCPGIVTCATKKG VGSATVNKSPQEVAAGIATGIKEALAGPGGLPLLADEYLLEFCFSSAGRARAASFYPGAE RAGERIVSYRAKSIMELLTAKMFMTEI >gi|300495894|gb|AEAT01000135.1| GENE 18 20877 - 21935 899 352 aa, chain + ## HITS:1 COG:PH0078 KEGG:ns NR:ns ## COG: PH0078 COG3191 # Protein_GI_number: 14590032 # Func_class: E Amino acid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: L-aminopeptidase/D-esterase # Organism: Pyrococcus horikoshii # 1 348 6 344 361 295 48.0 7e-80 MGLKGELFLPRAYQTGEKNDITDVPGIKVGQVTLRKGGVNTGVTAILPGSDIFKQKMLAS GQVINGFGKTTGLVQINELGTLETPILMTNTLAVGTCWTALTRYMLDRNPDIGLTTGTVN PVVMECNDGDLNDIRSLPVKESDALTALALAEGNPPLLEGNVGAGTGMRCLGFKGGIGSA SRLLELGGKKYHVASLVCANFGAFGKLRAGSRLLGQELKDAVLARAKAENNQLYARYQKD QGSIVMVIATDLPLSSRQLGRLARRSAVGLARTGSYIGDGSGDIALAFSTAQRVSHFAKE AESFSFLPDSHLDPVFEAGAETIEEAVLSALVHAETLTGFQGRRVYGLGDFL >gi|300495894|gb|AEAT01000135.1| GENE 19 22037 - 22915 1368 292 aa, chain + ## HITS:1 COG:SPy0652 KEGG:ns NR:ns ## COG: SPy0652 COG1660 # Protein_GI_number: 15674720 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Streptococcus pyogenes M1 GAS # 1 288 1 288 296 301 50.0 1e-81 MHEKHKKQLLILTGMSGAGKTVAAHSLEDVGYFVVDNLPPELLGNFWDLMNTSEDFEKVA VVIDLRVKSFYKDLIDEINSLEDSGQTQATIVFLEASDDTLVARYKETRRLPPLAENGRL LDGIRDERRILTPVRNRSNYILDTSKMTTKELKQKLQSKFGELHKPKFGIEVMSFGFKYG MPIDADIVMDVRFLPNPFYIPELRPFTGLDKRVFNYVMDKDETKVFYGKLLDLLLTAIPG YIDEGKEKLTIAIGCTGGQHRSVSIAQQLARDLSEKYPVDITHREISRYLRK >gi|300495894|gb|AEAT01000135.1| GENE 20 22925 - 23944 1374 339 aa, chain + ## HITS:1 COG:L189428 KEGG:ns NR:ns ## COG: L189428 COG0391 # Protein_GI_number: 15672944 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 17 337 4 326 327 329 50.0 6e-90 MSFGENKIIRIIKRRRPRVVVIGGGTGLPVILQALKKQDAEITAIVTVSDDGGSSGIIRN YINVVPPGDIRNVLVSLSDLSQEKKQIFQYRFESKDSFFSGHAIGNLIIAALSEMQGNIF DAVQNLSAMMEVDGHIYPSANEPLTLNAEFMDGSQSSGEVEITSQHKQIKRVWVTADDGE PAAPSPVIEAIMQADAIVLGPGSLFTSILPNLMIPNVGQAVRETKAEVVYVCNIMTQAGE TVGLSDADHVRVINQHLGGNYIDTALVNGAQIDMTKFHPEDYDEYLKPVANDFAGLQEQN CRVITDDFIDQRSGLVFHDGDKVAREIIDLALQEMFKRK >gi|300495894|gb|AEAT01000135.1| GENE 21 23952 - 24884 1469 310 aa, chain + ## HITS:1 COG:BS_yvcL KEGG:ns NR:ns ## COG: BS_yvcL COG1481 # Protein_GI_number: 16080528 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 310 2 308 316 303 53.0 3e-82 MASYASEVKKELTSIEVHPEHAKAELAAFLRMNAVLSRHDGQISLDIVTENPAIARRIFS LIKTAYGFEPQLIVTRKMKLKKNHQYLVRVAQMVSEIMADLEIYSPKKGFITGVPDKIKY SEQRSMSYLRGAFLASGSVNNPETSRYHLEIYCTYANHSQDLQEIMNKYFDLNAKVTARR SGSIVYLKEAEKIGDFLHVVGAVNAMLAFEDLRIMRDMRNSVNRLVNCDTANLRKTAGAA AKQVEDIELIDQKQGLESLPEKLASLARFRLQHPELSLKELAEQVPDGPISKSGVNHRLK KLHEIAENLR >gi|300495894|gb|AEAT01000135.1| GENE 22 24952 - 25536 934 194 aa, chain - ## HITS:1 COG:lin2612 KEGG:ns NR:ns ## COG: lin2612 COG0740 # Protein_GI_number: 16801674 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Listeria innocua # 2 193 3 194 198 260 69.0 1e-69 MLVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEVNDQMANSIIAQLLFLDAQDNTKDIY MYINSPGGVITSGMAIVDTMNFIKSPVSTIATGMAASMASIILAEGEKGKRFALPHATVL IHQPLGGAQGQATEIQIAAEEILKTRKMINEILAKDSGQDIETIKRDTERDHYMTAQEAK DYGLIDDIMVNQNK >gi|300495894|gb|AEAT01000135.1| GENE 23 25720 - 27216 2414 498 aa, chain + ## HITS:1 COG:no KEGG:LBUL_0560 NR:ns ## KEGG: LBUL_0560 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 308 1 308 400 543 97.0 1e-153 MDKKPLCSLLLAAAFIGQAQTAQAATVSKMPGTKNMGIYAKVTKKGASKKVTTTKYFKYS KIQSTASKKTKKGTYAYIYANGRPLGWVSEKWFVRNKISAAKQIYLVEDDNRFNYKDAIS YVTDAHGTMVDPANGAVKASLSGDKLTFTYGKAKTTVELVKTANPNRNLKPAVSAKKGPK EVASTRKHSGSSKNWNAAHRYGTETSSNRWTSGGLTLATQLWEPRNLSLETNDWRQVGPV MEGLAVNGGWAYSSWYRSAAASDQLKGNIVAFNMKKLNKYQAQYLSPRSYLYKKLSFGKF KSYSQNVKVSPYLRLGHGQSLGARSKYIYVLANENKLPGGASNGFYSEEILQLKKSDLTI NKVWSIRVDVGSSGRYFYNAAFAGDNTMYGVFHNAAFGRYEFWRLNLVNNRWQVSQVTAT QSHFVKQQAGSSPVQGFSVSGSNMYLAFNNLIFKLQTDGTYQKTWKHVSNREIEGLASDG SQLYAQLAQRGEILSGRW >gi|300495894|gb|AEAT01000135.1| GENE 24 27575 - 28555 1594 326 aa, chain + ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 2 318 14 339 344 240 39.0 2e-63 MKKVLAAFAAIYLFLAAALFINIKPAAQKSKEVRVGVLTLMRHPALDEIYRGYKAGLAKS GYKVKIDYQNANNDQSNLKTMAEKLVNSQDQVLFGITTPSSQALANATKKKPIVLGAVTD PKGAGLVKNNKRPGGNITGVSDRAPIKQQLKLIQRFLPRLKTLGIIYTSSDSSAVSGYKQ IVSYCKQMGINYKAYSISNSNDLNQVSQQMLTQVDAVIVPTDNTIAGAMQTLVKNANAAK KPVFPAAGTMVKDGGLATYSVDQYQLGLIGAKMTVQILQGKKPGNMAIRYVEHGTPYLNL KEAKKLGTKVPASFLKEAKSKGTIYK >gi|300495894|gb|AEAT01000135.1| GENE 25 28574 - 29470 1413 298 aa, chain + ## HITS:1 COG:SP1070 KEGG:ns NR:ns ## COG: SP1070 COG4120 # Protein_GI_number: 15900939 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 3 296 1 285 288 243 51.0 3e-64 MNLIVSAIGQGFLWGLLGLGLFLSFRIMNTTDMTVEGTFPLGAAVSVSLIVQGTNPFLAT LAAFVAGALAGLVTALLITKGKIPSLLAGILTMTGIYSIDLMVMGKSNVSLLGKKTIYSL AFLQKLPQYFDSVVAGTILMVLVTCDLIWFLSTDFGQAFIATGDNPQMAKSQGISPQQMT VAGLMISNGLVGLCGAVVAQSNGYADVNMGMGTIVIALASIIISEVVFRNLGLASRLFAV SLGSIIYRLLLLAVLQVGLSSNNLNLISSLVLAACMMLPQVEEKLRLKQTFMKGFKHD >gi|300495894|gb|AEAT01000135.1| GENE 26 29463 - 30227 203 254 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 232 1 221 318 82 28 5e-15 MTSQNLLELTDLEVVVGRGTSEENKILGKLSLKIKPGDFICLLGGNGAGKSTLLNVLAGA IQPTSGKILHAGKDISKESEVKRSSYIARVFQDPKLGTAPRMTVAENLLLAAKRGQKRGL KLRRLKENIPAFKEALEKVNPDLAGKLDLPVDQLSGGQRQALSFVMATYNKPELLLLDEH TAALDPRSSRKLMEATDEQIRAKKITAVMITHHMEDALKYGNRLLVLDHGQISHDYQGQA KQDLTLQDLAALFD >gi|300495894|gb|AEAT01000135.1| GENE 27 30576 - 31724 864 382 aa, chain + ## HITS:1 COG:lin2554 KEGG:ns NR:ns ## COG: lin2554 COG2390 # Protein_GI_number: 16801616 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Listeria innocua # 46 381 11 346 348 261 41.0 1e-69 MEIEAKSCFSYIFKQCGTENDNSVVEKRPTRRMVTLNTDLSLLELLVPDALKIFRQRYLI LEQISLHAPIGRRTVARQLGLSERNIRTETDYLRDQGLIEIKNFGMFLTEKGESVVKDAA PIVDRLFNASQAEVWLAQALGIDRTIIVAGDADLQSRVYDLAGEELNSALNLLLPLADCI VTVMGGKTIAKVAKKLNRSLSENRSLIFVPGRGALGGRVNTESNAVVQEMARATGGSYES LFLPEHVSKDAYRSLVRDPEISGVLQDISQSDVVVHGIGLASEMARRRGYDSVALARLRE NKAVTECFGCFFDEEGHVVERIRQVGLQFENLTNVPHILAIALGTRKAKAIKAYMRNAPH QTWLITDEAAANQILNGSSRLK >gi|300495894|gb|AEAT01000135.1| GENE 28 31762 - 32778 1218 338 aa, chain + ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 4 338 3 333 333 426 66.0 1e-119 MTVKIGINGFGRIGRLAFRRIMDLGEETKDIEVVAINDLTTPAMLAHLLKYDSTHGTFDH EVSATEDSLVVDGKKYRVYAEPQAQNIPWVKNDGVDFVLECTGFYTSKAKSQAHLDAGAK RVLISAPAGNDLKTIVYSVNQDTLTADDTIVSAGSCTTNSLAPMANALNKEFGIEVGTMT TIHAYTATQKVLDGPDRGNNFRNARAAAENIIPHSTGAAKAIGLVLPELNGKLDGHAQRV PVKDGSETELVTILGKKVTAEEVNAAMKKYESPSFAYNADQIVSTDVLGMTAGSIFDPTQ TQVITAGDKQLVKTVAWYDNEYSFTCQMVRTLLHFATL >gi|300495894|gb|AEAT01000135.1| GENE 29 32874 - 34085 1910 403 aa, chain + ## HITS:1 COG:lin2552 KEGG:ns NR:ns ## COG: lin2552 COG0126 # Protein_GI_number: 16801614 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Listeria innocua # 1 403 1 396 396 516 68.0 1e-146 MAKLIVSDVDVKDKKVLVRVDFNVPIKDGVIGDDNRIVAALPTIKYIIENGGKAILLSHL GRIKSDEDKKSLSLAPVAKRLGELLEKPVTFVPSNEGKEVEDAINNMKDGDVVVLENTRF QDIDNDFGKRESKNDPKLGEYWASLGDVFVNDAFGTAHRSHASNVGIATAMKAAGKPAAA GFLLEKEIKFLGNAVANPVHPFVTILGGAKVSDKIGVITNLIPKADHIIIGGGMAYTFLK AQGHNIGKSLVEDDKVEFAKELLEKAGDKLVLPIDHVAATEFNNDAASEVVGQDIPDNEM GLDIGPKTIELFKKTLEGAKTVVWNGPMGVFEMPNFAKGTLEVGRALADLPDATTIVGGG DSTAAAKQLGIAPKLTHISTGGGASLEYLEGKELPGIACVSDK >gi|300495894|gb|AEAT01000135.1| GENE 30 34104 - 34862 1194 252 aa, chain + ## HITS:1 COG:SP1574 KEGG:ns NR:ns ## COG: SP1574 COG0149 # Protein_GI_number: 15901416 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 1 250 1 250 252 328 64.0 7e-90 MSRTPIIAGNWKLNMNPKETVEFVNAVKDQLPDPSKVESVICAPAVDLDALLKAAEGSNL HVGAENCYWENSGAFTGETSPAVLKEMGVQYVIIGHSERREYFHETDEDINKKAKAIFAN GLTPILCCGESLETREAGKENEWVVNQIKAGLEGLTSEQVSKLVIAYEPIWAIGTGKTAS SDQAEEMCKTIRETVKDLYNEETAENVRIQYGGSVKPANVKELMAKPNIDGGLVGGASLV PDSYLALVNYQD >gi|300495894|gb|AEAT01000135.1| GENE 31 35336 - 35902 716 188 aa, chain + ## HITS:1 COG:lin0816 KEGG:ns NR:ns ## COG: lin0816 COG0454 # Protein_GI_number: 16799890 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 1 186 1 185 185 106 32.0 3e-23 MIRKARKSDFEAVYPILSQIFDEMDMDTINRLPESQFYDLIRLGFISENYRYSYNRIWVE TDENDRVRGMICMYPDKAQGIIDVVLRKEMAKVGLPMTTDIFTDKEAQKGEWYIDALAVS PRDWGKGIASRLMELAPKLAKKHGYKKVSLNVDLENPRAQQLYLRKGFKTTNSMTIGDRV YDHMVKEV >gi|300495894|gb|AEAT01000135.1| GENE 32 35859 - 36428 727 189 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0575 NR:ns ## KEGG: LDBND_0575 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 189 1 189 189 374 97.0 1e-102 MIYTLYLTQEGRTGQIPITDEEGKPFGSIRGRLDNPNHTLYLLDTSGNEIGRLFSDGTGL IASYTLDVVHHSLVHVKKVNSPQTNLFYITRLNYWVNGSIKQGSYSFRDGFKKVASVDTV VADKGVTLTCQISREEDTPFILLIAVLFTQWHVTPLKLPDLFPNLNRRQTSTASFFKLLL PYGRKHGRQ >gi|300495894|gb|AEAT01000135.1| GENE 33 36425 - 37309 1460 294 aa, chain - ## HITS:1 COG:SA0517 KEGG:ns NR:ns ## COG: SA0517 COG0561 # Protein_GI_number: 15926237 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 289 1 288 289 157 37.0 2e-38 MIKLIACDLDGTLLNSSMEISDANVQAIKRAQENGIEFMVASGRAPHESQPMLKEYGIDC GFINLNGGLVFDTAGNLIVKNPLKLETAKKICRLLKKEGFYFELVTSNHVYSEDLSQRIT NVAHLMVELNPMLTFKEAVLVSASKPAIVSIQQVPSYEDLMDEPGTEVMKILVFDSRGQY AFTDVIKKIEEIDKLSITSSAADNIEINAAGAQKGQSLLDYAAAKGIKREEIAAIGDNLN DESMIQAAGTGVAMGNAIPQIKTIASFVTKSNNEDGVAWAIDKIIADNQKEQDQ >gi|300495894|gb|AEAT01000135.1| GENE 34 37471 - 38154 800 227 aa, chain + ## HITS:1 COG:BH3850 KEGG:ns NR:ns ## COG: BH3850 COG0692 # Protein_GI_number: 15616412 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Bacillus halodurans # 7 222 6 222 224 254 57.0 1e-67 MKHFIGNDWDQVLTPVFESDEYHKLHDFLKKEYQTRQIYPDMYHIFTAFKLTPFKDTKVV ILGQDPYHNPGQANGMSFSVMPGTPLPPSLRNVYKELYDDVGAQPVNHGYLKRWADQGVL LLNAVLTVPYGQANGHQGKGWEMVTDAAIKALSERGQVVFILWGRFAQNKIPLIDQDKNV IIKSAHPSPFSADRGFFGSRPFSRCNAALKEFGRAPVDWQLPPDPEA >gi|300495894|gb|AEAT01000135.1| GENE 35 38175 - 39164 1635 329 aa, chain + ## HITS:1 COG:L107797 KEGG:ns NR:ns ## COG: L107797 COG0280 # Protein_GI_number: 15673641 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Lactococcus lactis # 1 326 1 325 326 347 58.0 1e-95 MEVFEQLKQLIKQKDKQRIVFPEGEDPRILTAVSRLKQDDLVEPIVLGQKDQVLALAEKA GLDMTGIEIVDYQNSPDFGEMVEKFHERMAGGKHFQTMEEAEAALRDANFYGTMLVYTGQ ADGMVSGAAHSTADTVRPALFILKTKPGMHRISGSFIMERGEEKYVFADCAISIDPTSDQ LVEFAAQSAATAKMIGIDPKVAFLSFSTHGSAKGPQVDKVAEAAKLFKEKYPDIPADGDL QFDAAFVPAVAELKAPGSAVGGRANVFIFPELQSGNIAYKITQRLGNFTAIGPVLQGIAK PVNDLSRGCSADDVYKIGILTAAQAVMEG >gi|300495894|gb|AEAT01000135.1| GENE 36 39175 - 39660 539 161 aa, chain + ## HITS:1 COG:lin2184 KEGG:ns NR:ns ## COG: lin2184 COG0802 # Protein_GI_number: 16801249 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Listeria innocua # 3 145 4 142 153 121 41.0 7e-28 MTELAINSASDMQAFGAALAQSAQPHDLLLLKGDLGAGKTTLTQGFGRALGIKRPVKSPT FTLVREYREGKLPLFHMDFYRLEGDDLASIDLNDYLAEEGVVIIEWPQVIQADLPSDFLE LVLTRVDDSWDSTKRLLELVPHGQRAAAWAENACRLYQEKQ >gi|300495894|gb|AEAT01000135.1| GENE 37 39737 - 40273 854 178 aa, chain - ## HITS:1 COG:CAC0738 KEGG:ns NR:ns ## COG: CAC0738 COG0847 # Protein_GI_number: 15894025 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Clostridium acetobutylicum # 2 160 1 158 306 117 37.0 2e-26 MMNFVAMDFETANQHPASACSLALVLVRESKIIDRFYTVINPQMAFDAQQVKVHDITAED VAGAPTMAEVWPKIQPLFQPGMLVAAHNARFDCNVMKQSLARYGIAEPHYLVLDSLKVSR ELEPGLDNYQLNTVSDLLGVELWHHHNALSDSEACAGILLKEEEKRGSELLKKFVYQV >gi|300495894|gb|AEAT01000135.1| GENE 38 40396 - 41289 1278 297 aa, chain + ## HITS:1 COG:SPy1101 KEGG:ns NR:ns ## COG: SPy1101 COG0812 # Protein_GI_number: 15675084 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 9 296 6 293 295 309 51.0 4e-84 MKLYDLKAQGLDLQENIPLSRYTFTQTGGPAEYLAFPKTLAELKELLAAVKEDQLPITVI GNASNLIIRDKGIKGLVIILTEMKEIKVEADKVHAQAGARIIDTSFAAGEAGLSGLEFAA GIPGSVGGAVFMNAGAYGGETKDCLESATVVTRDGEVKTYTNAELHFSYRHSLLQENGEI VIAATFALKAGDKATILDQMNYLNALRSYKQPLEYPSCGSVFKRPTGHFVGPMLIKAGLQ GKQIGGAQVSTKHAGFIVNKGGATATDYLNLIHYIQKTIKEKDGIALQTEVRIIGEE >gi|300495894|gb|AEAT01000135.1| GENE 39 41330 - 42418 1524 362 aa, chain + ## HITS:1 COG:lin0797 KEGG:ns NR:ns ## COG: lin0797 COG3842 # Protein_GI_number: 16799871 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Listeria innocua # 3 359 5 361 364 462 63.0 1e-130 MEIIKLDHITKQYDDGFVALKDINLELESGKFYSLLGPSGSGKTTILRIIAGFTEASAGK VYFDGQDITNLDASKRHINTVFQNYALFPHLNVYENVAFALKLRRRPESEIREKVKDALH TVRLDGYANREISELSGGQQQRVAIARAIINEPKVLLLDECLSALDKRLRKEMQFELRAI QKKLGITFIFVTHDQEEALAMSDEIFVLNDGEIQQSGSPVDIYDEPVNHFVARFIGDSNI LSGRMIRDFAVEFAGKDFECADAGITPGEKVEVVLRPEDLDITAPAAGKLLVTVQSQLFL GDHFEIKAIGQDGFEWLIHSTNGVQIGQEVGIFFDPEDIHVMRLGETEEEFDARLETYEG ED >gi|300495894|gb|AEAT01000135.1| GENE 40 42421 - 43233 1051 270 aa, chain + ## HITS:1 COG:SP1388 KEGG:ns NR:ns ## COG: SP1388 COG1176 # Protein_GI_number: 15901242 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Streptococcus pneumoniae TIGR4 # 2 265 10 275 275 286 60.0 2e-77 MKKNRLLFLLPYLLWIGLFVIAPLVLILGYSLTDAHSHLTLQNFAAFFSGGTFLRMMANS FWYALLITFFCLLVSYPAALVLTRLKNQQFWLMLIILPTWINLLLKAYAFIGIFSRSGMV NQFLGLFGIGPVGIMFTDFAFIFVATYIEIPFMVMPIYNSLKEIDPALLSASSDLGASFW QTFRYVIWPLSWPGVESGIQAIFIPSLSLFMLTRLIGGNRVITLGTAVEEYFLTTMNWNM GATIGVILIALMSIVMLLTSRKQHKKGIEL >gi|300495894|gb|AEAT01000135.1| GENE 41 43230 - 44033 1183 267 aa, chain + ## HITS:1 COG:lin0799 KEGG:ns NR:ns ## COG: lin0799 COG1177 # Protein_GI_number: 16799873 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Listeria innocua # 1 264 1 265 268 284 62.0 1e-76 MKKTIWGRVYFGLVLLILYLPIFYLIYFSFSSGSSMDHFRHFTWEHYQTLFADKRLLAIL LETIMLALLSSLAATVLGTFGAIAIQRSKEAYRKILLSFNNILIVSPDVIIGASFLILFT ALGFNLGFASVLLSHIAFSVPIVVLMVLPKLKEMDNSLIDAARDLGANNYQVFSQVLLPA LTPGILSGFFMALTYSLDDFAVTFFVTGNGFTTLSVEIYSRARQGIDLEVNALSTIIFFF VLLLVGVYYFLTKRQGKKANKLGGLLR >gi|300495894|gb|AEAT01000135.1| GENE 42 44030 - 45112 1877 360 aa, chain + ## HITS:1 COG:lin0800 KEGG:ns NR:ns ## COG: lin0800 COG0687 # Protein_GI_number: 16799874 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Listeria innocua # 1 359 1 357 357 400 54.0 1e-111 MKKILSAALAILLVSLGLYLGAQQLDSSSGGSASSKKDLIIYNWGDYIDPDLITKFEKQT GYHVIYETFDSNEAMYTKIKQGGTAYDLAVPSDYMITKLRRDNLLDKIDTSRLSNFKYIG KEFLHKSFDEKNEYSVPYFWGTLGIVYNDRYVKKGEIKSWNDLWKKKYQGQILLVDSARD IMGMSLVSMGYSMNDTNSAHLKVAKAKLDKIGKNVKAIVADELKMYMVQNEAWIGVTYSG EAATMMDQDSHIHYVVPAQGSNLWFDNIVIPKTCKNKEAAYKFINFMLEPKNAAQNAEYI GYSTPNTAAQKLLPKSVREDKQFYPPMSTVKNLEVYRDLPSSKVQEYNDLFLEFKMYARN >gi|300495894|gb|AEAT01000135.1| GENE 43 45144 - 45983 1436 279 aa, chain + ## HITS:1 COG:lin2225 KEGG:ns NR:ns ## COG: lin2225 COG1624 # Protein_GI_number: 16801290 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 4 262 2 260 273 277 52.0 1e-74 MQFDFASLWTWHTLSVVLDVLITWYFIYHLTHLIKGTKAVQLANGIILIMVARVLAGWAQ LTTVTFILDQIVSWSVIGIIVIFQPEIRRGLERLGRVSLFSDSENSKREQQEKLVKELDK AIQYMSKRRIGALITLEQKTGLEEYVETGIKLDALVTGELLINIFIPNTPLHDGAVIIKN NRVQVASAYLPLSDNAMIPKSLGTRHRAAVGISEVTDAITVVVSEETGGVTITRNGQFMV DLSQQEYLKYLRAELVTEEKKKQPWPIRLARGIWNWGDK >gi|300495894|gb|AEAT01000135.1| GENE 44 45983 - 46933 1086 316 aa, chain + ## HITS:1 COG:lin2224 KEGG:ns NR:ns ## COG: lin2224 COG4856 # Protein_GI_number: 16801289 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 53 316 52 320 452 130 29.0 3e-30 MHKLIEQKWFYKLFSLLLAIVLVAFVDNTQVNTNNQTKVQETASTEQSLKMALQVSVDTD KYYVTGYPSKVKVTLEGPNALVTSAVNTQNFRVYIDLSKLGVGSHQVLIKVSGLPSQVSC KLSQKSVKVNIQKRKSRTLPVQIGYNKNAVAQGYDIGTPTVSPETVEVTGAQSEVKAIDH VQAQLVVPNGSTETVRRNVLLAAYDAKGHQLNVVISPATARVTLPLSVSKKTVKLKLNAS HGSSKKVYSLTAKEEKVTLYGQKEALKKISSLTLDVDLTDIKSSVTKSFRLPVPSGVAWI SPGSVDVQIEVSDSNN >gi|300495894|gb|AEAT01000135.1| GENE 45 46957 - 48309 2126 450 aa, chain + ## HITS:1 COG:BS_ybbT KEGG:ns NR:ns ## COG: BS_ybbT COG1109 # Protein_GI_number: 16077245 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Bacillus subtilis # 1 449 1 446 448 521 60.0 1e-148 MLKYFGTDGVRGEANKVLTPEMAFKLGRMGGYVLTKEKEDGGQARVLVSRDTRISGEMLE HALISGLLSVGIEVLECGVMTTPGLSYLVQAQGADAGVQISASHNPVEDNGIKFFGSDGL KLSDAKEEEIEELIDTKQDMLPRPSAEGLGTVTDFRDGSNKYIQFLENTIPEDLSGIKVV IDGANGAASAFISRLFADLDVDFTTISTHPNGLNINDHCGATHTARLQEEVVKQGAQLGL AFDGDADRCIAVDENGNEVDGDHIMYVIGSYLADHGRLKKDTIVTTVMSNLGFTKALERR GIKNVRTQVGDRYVSEEMRANGYSLGGEQSGHVIISDYHNTGDGMLTGIHLMLVMKKTGK SLTELLADFKEYPQVLVNVPVKDKNSWKNHQAVVDAIDSVEKDMAGDGRVLVRPSGTQEL LRVMAEGPTQEITQEYVDRIVKVVTTEMGE >gi|300495894|gb|AEAT01000135.1| GENE 46 48458 - 49270 1280 270 aa, chain + ## HITS:1 COG:lin0298 KEGG:ns NR:ns ## COG: lin0298 COG0561 # Protein_GI_number: 16799375 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 4 270 3 268 270 168 37.0 9e-42 MAIKMLAIDLDGTLLTDSKTILPGTYKALQEAKAAGIKIVLTSGRPLSGIKGYAEELGLS GSEEYAILFNGAVVQNLDGRVLISHDLDFGDFNTLLHMQRLSDVNLDFETPDRFYTLDKK ISIRLQIDGSETKNQLWIQDRSDFKKDFTFAKAAYQCDDPDQVDRLWNRLPDWFFQSYAV VRSWPEVVEVGSLAASKGYAVSELASRLGLSNSEVMIFGDQGNDRSMFEIPDIKRVAMGN AIDEIKDLADYVTDTNERDGIAKALRKLVL >gi|300495894|gb|AEAT01000135.1| GENE 47 49322 - 50296 753 324 aa, chain + ## HITS:1 COG:lin2030 KEGG:ns NR:ns ## COG: lin2030 COG1680 # Protein_GI_number: 16801096 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Listeria innocua # 50 314 56 326 335 141 32.0 2e-33 MTTAEIEEKITGIFEEAIRQKTVNGVSYALVDQGGVSRHYLGQAELGQFYDLASLTKVVG TASGIFKEMAAGKISLKDRVGDFFPAACSAVTVKDLLLHTSGLPADLDDVWQYQSPGEVW EAVLATKPLFLPGQESIYSDLNFIILGKILEQVSGQDLSSFLREEIFAPLGMRETGFLLK GKRDNFVKTEITKERGQVWGNVHDETAWQMGGLAGHAGLFSTLDDLARFSSFYLTTASPL VAGLFDYDCFERTLAWIRWQKGCRFLWHSGFTGPGLGLDLENGRALVILASSVYPKRGND AWMLARRQAAKTFFGGGYREEKQE >gi|300495894|gb|AEAT01000135.1| GENE 48 50375 - 50818 525 147 aa, chain + ## HITS:1 COG:SPy1717 KEGG:ns NR:ns ## COG: SPy1717 COG3682 # Protein_GI_number: 15675568 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 6 135 3 132 144 90 40.0 7e-19 MNEDCRISDAEWQVMRVVWTLGQANSSEIIEQLAAKCAWSPSTVKTLLRRLEKKGFLLVD RQGHRFVYRAAKAESEAMQESLTAEFAAMCDMHKGEMLLRLLDDLPLSRSDLEAIAKKAA EKAKTAPEKVGCNCLSTCEHMEGEREC >gi|300495894|gb|AEAT01000135.1| GENE 49 50812 - 51186 583 124 aa, chain + ## HITS:1 COG:SP0728 KEGG:ns NR:ns ## COG: SP0728 COG4633 # Protein_GI_number: 15900625 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 2 123 1 122 123 110 42.0 5e-25 MLVNGLVILAAAALIGLIIWWFFGNFQKSSQQADLANGRQEGQVVVKGGYEPEVLYLKQG VPAEVTFKMEDKTACLSHVVFSSLGVDKDLSKEKLAKVQIPTDKAGEIDYACGMDMFHGK IVVR >gi|300495894|gb|AEAT01000135.1| GENE 50 51186 - 53102 2147 638 aa, chain + ## HITS:1 COG:SP0729 KEGG:ns NR:ns ## COG: SP0729 COG2217 # Protein_GI_number: 15900626 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 3 632 18 659 660 625 54.0 1e-179 MKLTNWRRFWLSLFLALPMLAQMLLMIWGIMLPGIKTYSLIATSLIMLIGAGPYIQSAWA ALKRHQANMNSLIAIGTSVTYIYSLFAYFTGRPVYFESAAFILIFVLLGDALEEKMHDRA AASLNKLLELQASEAEVKRGEDFVKLPLDQVKAGDIIKVRPGGKVPVDGRLVSGQSSVNE AMVTGESMPVAKKPGDKVIGATINGSGSFLMAAEQVGEETMLAQIVQVVKQAQNSRAPIQ KLTDKVANYFVPAVLIVSILAFAIWDVFSPVGPVQAMLYAVSVIVIACPCALGLATPTAL MVASGRSARMGVLIKDGEILEAAAKIKTIVFDKTGTLTVGQPQLVDQMGDKASLSLAASL EANSEHPLAQAIVTSAKEGDQPLLPVSDFLAEEGKGVEGKVAGHLVKVGRADYVSAPDAW RQQAEGLAEAGKTVVYVQKDSSVIGLLALQDAPRPEAKAVLSELKNRGIKTVMLTGDNQQ LAEKIGRQLGIDQVEAGLLPGEKADRLAKLQEAGPVAFVGDGINDAPALSLADVGIAMGS GTDVAKEAGGIVLMTSDLTGVLRALDLSKQTFTRIKLNLFWALIYNLIGIPVAAGLFSFI GVSLSPELAALAMAFSSVSVLLSSLMLNWTKIAGAGKS >gi|300495894|gb|AEAT01000135.1| GENE 51 53255 - 53644 411 129 aa, chain + ## HITS:1 COG:lin2188 KEGG:ns NR:ns ## COG: lin2188 COG0239 # Protein_GI_number: 16801253 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Listeria innocua # 7 129 3 124 129 60 37.0 8e-10 MDTVKNYLSVAFFAFWGGLARYGLTEAFSFYGTVIANLLGCFLLAFLTYFFLRTSNNSRA WLTIGLGTGFVGAFTTFSSFNLDAFKLLLGGQNFGALLYFTGTIAAGFLFAWAGKQAANF AAGKLLERG >gi|300495894|gb|AEAT01000135.1| GENE 52 53649 - 54008 574 119 aa, chain + ## HITS:1 COG:lin2187 KEGG:ns NR:ns ## COG: lin2187 COG0239 # Protein_GI_number: 16801252 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Listeria innocua # 5 116 8 117 118 67 42.0 6e-12 MIFAVGFGASLGAVARYALTSYGKKHWMQGTAYPRPTLLINLTGAFFLGLAFALRLPASV YAFLGTGVLGGYTTFSTLNTEMVSLADNGQKHVLKRYLLASYLGGAVLLTCGYYLGSLL >gi|300495894|gb|AEAT01000135.1| GENE 53 54005 - 54754 849 249 aa, chain + ## HITS:1 COG:no KEGG:Ldb0663 NR:ns ## KEGG: Ldb0663 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 2 238 6 240 256 402 96.0 1e-111 MKKSQLILRKSLCSLAAIISLVALLSSPVTFKMYEVKDYASSLIDTFANQSDGSAMSIAA KAAVESGLKQDLVDQLPDKVEISESHLSLYRLVSRYRQNKRLQSSDLKLPAKNKVQLFMD DLILYLVNSELKVHEGELQQITQIYQLSLWIICVLYLLGVALLLFNRYWSWLPFVLGAAS AFGFQVFIAHTLTEMVQKEVYSKMLFTYSWGSWAGFLLALALAGYLFYLDVCRYRAKGKA NKNKEANNN >gi|300495894|gb|AEAT01000135.1| GENE 54 54983 - 56017 786 344 aa, chain + ## HITS:1 COG:AGl3214_2 KEGG:ns NR:ns ## COG: AGl3214_2 COG2199 # Protein_GI_number: 15891726 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 197 339 14 162 189 77 35.0 5e-14 MKKRAKKAELDKIAQSEVPIALYQSKNKQIKAIAVSKGLCELYGLPAAELKQLLDQDLEA DRVTLMEIHGDVARSTHSWQRPGVAEFSAKQQAISLAKATVSLSKLDLFNEDSLFLTDPQ AIAASFPQLVACYGDNYQLNNSLLAPFYERGELRGLVAVENLNPALNLDFNDLIELTADF VGAKVTGKNLEEQRDTDVLTKLNDRHPYLAKLNFYQKSQTSRTVGVAFMDLNGLKKANDE LGHDAGDKMLIAAGNLISQAFGRDYVYRVGGDEFVVLDDQSSRTEFESHCAAFEKALTQP ASPSISIGAEWCPDSHYLREVVERADRKMRRQKNDFYKSHKRYR >gi|300495894|gb|AEAT01000135.1| GENE 55 56146 - 56556 409 136 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0598 NR:ns ## KEGG: LDBND_0598 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 136 1 136 136 238 97.0 6e-62 MKGFYQPAGKLTACSLGNDGAFLANYVIKNALRVGLGIVSVVMGLTLLLFSIFEPLTSAL KRSLGYYSVASILFAVLQMQEEMQLTVLFGHYHVWRLFTYPVMVLLPFLLIMTINAQLDQ ALNERKSELYAAAKQD >gi|300495894|gb|AEAT01000135.1| GENE 56 56641 - 57099 572 152 aa, chain + ## HITS:1 COG:SP2028 KEGG:ns NR:ns ## COG: SP2028 COG0394 # Protein_GI_number: 15901849 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 152 1 138 142 104 34.0 6e-23 MQKILFLCHGNICRSPMAEFIMKQLLAEAGKADQVEVASAAVTGDEIVGGVGNPMDPRAQ RELAKNGVPFSQHRARLLTREDYDKYDYLIAMDSENFMAMNQICGGDPERKQYKLLQFAG SYADIDDPWYTNDFDLAFQEISRGCRGLLDQL >gi|300495894|gb|AEAT01000135.1| GENE 57 57196 - 57852 999 218 aa, chain + ## HITS:1 COG:XF1747 KEGG:ns NR:ns ## COG: XF1747 COG0702 # Protein_GI_number: 15838348 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Xylella fastidiosa 9a5c # 1 212 1 206 213 108 34.0 8e-24 MKKYVILHPTGRISRLVIKHLLADPQFSDVELELLTQRPELLADLAKGDRIKLTEGAATD LDKILAVTKDADLVFLGKVDDKKFTVISKNLVKASQENGFDRVIELSLAGLYYEIPGEFG TWVDEWVGSGRFLPAREAAHRLEEADLDYTLIRMPALTDWPDVKYSLTGRYDEFVGTSVS RASVAGLVLKIMADPSQYSRASVGISQPETAGYVRPVY >gi|300495894|gb|AEAT01000135.1| GENE 58 57939 - 59570 2452 543 aa, chain - ## HITS:1 COG:STM0969 KEGG:ns NR:ns ## COG: STM0969 COG0531 # Protein_GI_number: 16764329 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Salmonella typhimurium LT2 # 11 475 9 471 473 328 38.0 1e-89 MDELDKKGNYISWQTLAMMAFVTVIGLEDIMYNFQNQGMAVITSWVLMMFLYVVPYALIV GHLGSVFNHEGGGLSSWVRATDGEFLGYFTAWTYWAASIPYVVDTANCLLVDVGWGLTGT DEFEDPKFLSTAMFTAITFVIFILLTLLEHKFSKSMEVLSNIGGWAMFIMTILFVLLAFA GLAKSGGRTATPFTWKTIIPKFDLKYFSTVGMLIYAVNGSELVAPYVTRMKDPKREFPKA MIALALMTCFLTIFGSIALGIYIDANHMPNDLKMNGEYYVFGAMGKQFGVGKLFVYIYAW ASFFYNVALLSVLLDAMTRMLISDTGDKYMPKFLKKTNKDGLPINGYILTVFLSGFIMVL GIFLPDMNDIFNWLLNLNGIISPAVTCWIFYSFMKVRGKNSSKYPSVYRYIKNDTFAWWV GFALLAVTAVATVLGFMPQDVKEGSWVWWYELSINIVACLVLIGLGGIFPGIRRREEEYG LAFDKQQWTWMIALVLGSIVFNVWLGGTTIKLRALYIVIESVIALLAVWLIGRRLPKGAK ASK >gi|300495894|gb|AEAT01000135.1| GENE 59 59830 - 60357 844 175 aa, chain + ## HITS:1 COG:SPy0466 KEGG:ns NR:ns ## COG: SPy0466 COG0225 # Protein_GI_number: 15674584 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 5 173 1 168 169 225 64.0 3e-59 MEKKLDSAIFAGGCFWCMVAPFDTLPGIESVTAGYTGRHVPNPTYEQVCSHTTGHTEAVK IVFDPDLMSYEDLLGYYWQVTDPTDASGQFQDRGDNYRPVIFYNSPEQKAAAEKSKQELA ESGRFDDPIVTKIEPAAPFYAAEDYHQQFYLKHPDRYAAEEAGGRAQFIKEHWGK >gi|300495894|gb|AEAT01000135.1| GENE 60 60406 - 61221 1022 271 aa, chain + ## HITS:1 COG:PM0638 KEGG:ns NR:ns ## COG: PM0638 COG4667 # Protein_GI_number: 15602503 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Pasteurella multocida # 1 269 12 278 280 213 39.0 4e-55 MRGLYTAGVTDVLMKYGIKFDGAVGVSAGVTFGCNYKSLQPGRVLRYNLRYGSRPQFKSW RSWLKTGDLYGADFCYYTLPEVLDPFDTAAFARNPMDFWCVATDVETAQPAYHKLTTGKG RDVAWIRASASIPVFARPVKIGGHAYWDGGVSDSIPVRFLLDKDYDKAVVILTQPAGYQK EPSRLQPVVDRVLKKYPAVVARLRQRHLEYNACLAYIAKEEAAGHLFVFRPSQGIDVSAM EKDPNRLKAVYQVGVRDAKRQLAALKEFLQD >gi|300495894|gb|AEAT01000135.1| GENE 61 61307 - 62188 1564 293 aa, chain - ## HITS:1 COG:ML0337 KEGG:ns NR:ns ## COG: ML0337 COG0803 # Protein_GI_number: 15827093 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Mycobacterium leprae # 6 280 2 283 302 123 27.0 4e-28 MKKTHRQLIIWPILLLTTLFLAGCAKDEQSSKSQIKIVTSTNIYADIAQNIVGKYGKATA LIANGNSDPHDYEPTTNAAKTVADADIIVANGMGYDSWMGNLAASNGKKAVKVGEDLMQL DSSANPHIWYNLNMPKKYVAYLVKKLSKLDKKHASYYQAQGKKYLQKIAKIEKVADGIKG SKAKPVFVSEPVFDYALERTGFKIGNKNFEEATEKETDPSAAVIAQMNEAIKKKQIAFFV NNTQASSDTVKSFVKKAKKQGIPIVEVRETMPNKVSYADWMLANYQKLAKFGD >gi|300495894|gb|AEAT01000135.1| GENE 62 62295 - 62816 773 173 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0607 NR:ns ## KEGG: LDBND_0607 # Name: not_defined # Def: integral membrane protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 173 1 173 173 295 97.0 6e-79 MNDFKFSKREKIYLLLALAVLVMLFISSSMTYHEQKMKAGFIHTYLGWLEDLIHRLNIYY GGVWHNVKTDGSAGFTQFVVRKLAHFTSYFFYGLFAYLGLRRVFVIKWTGPLFVWASAFA FAAMDEFHQFLTGDRTPSVHDVMLDASGALLAIVLAVIFYQVKQRRERKKAAI >gi|300495894|gb|AEAT01000135.1| GENE 63 62899 - 63630 1068 243 aa, chain + ## HITS:1 COG:lin1570 KEGG:ns NR:ns ## COG: lin1570 COG0217 # Protein_GI_number: 16800638 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 238 1 238 241 289 63.0 3e-78 MSGHSKWHNIQGRKNAQDAKRGKVFQKLSREIYMAAKSGGPDPSGNPSLRLVMDKARAAN MPKDNVQRAIKKAEGNSDEHYDEVTYEGYAPGGVAILVEALTDNKNRTASSVRVAFTRNG GSLGATGSVAYMFDRKGYIVIDRSTTDADEDQMLMDVMEAGGDDLQTSDDAYEIYTDAKS FTAVRDALEKAGYQLAVSELTMVPQNTTPVPADKKEQFEKLVDALEDDDDVSNVYTAAAD EEE >gi|300495894|gb|AEAT01000135.1| GENE 64 63816 - 64760 621 314 aa, chain + ## HITS:1 COG:SPy0101 KEGG:ns NR:ns ## COG: SPy0101 COG2804 # Protein_GI_number: 15674324 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Streptococcus pyogenes M1 GAS # 7 312 15 310 312 207 39.0 2e-53 MLEEAVRIRASDIFFLPKKGIYKLRLRAGDLEERPSLTREAGNELINWFKYQAEMDIAEH RRPQVGSMAVNLAGQDYWLRLSSVGDYRGEDSLVIRIIYALGESRYFFPDQFGDLVDLCW LRGMIVTSGPTGSGKTTTMYELARKLSQTKMVMTIEDPVEVYEESFFQAQVNAGAGISYA SLLKAALRHRPDALIIGEIRDEETAHLAVDAALSGHLVLATVHAKSTYQTISRLESLGVK NNELVNCLTAVSYQRLLPGKKGPACLLDLASREDLLAALGQSVRGNFAAWEENLSRLVEK GEISADVARQYKGG >gi|300495894|gb|AEAT01000135.1| GENE 65 64732 - 65730 1133 332 aa, chain + ## HITS:1 COG:SA1373 KEGG:ns NR:ns ## COG: SA1373 COG1459 # Protein_GI_number: 15927123 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Staphylococcus aureus N315 # 7 332 14 355 356 98 22.0 2e-20 MWQGNIKAAKLKQSEQVELLAFLANCLKNGFSLTKSLQLLPLLWPKRKKQLARLDEKMRQ GEELGQLFAGLGFNKTTVTQLDMALSQGRLDESLDQLALLGRMKNEQVKKLEGELAYPVV LAGMMTLILIFMQNFLSVEFAGSSAKQGDLLLLILVFLLVLVIMLVVIAAAYMKKQDYQS FKKLLTWPVFGPVVALYGQYLISYDLGMLLASGFSLQQMCDFACRQAPGSLQEEVGRRAR DAILRGKKVEEVIQKEPFLSQELLMLLQAGSEREELSRQCLLLSRLLFNRLRQKLSKLIV SVQPVCFILIGLCIIGMYLKLLLPIYDSMQQL >gi|300495894|gb|AEAT01000135.1| GENE 66 65752 - 66075 448 107 aa, chain + ## HITS:1 COG:SPy0103 KEGG:ns NR:ns ## COG: SPy0103 COG4537 # Protein_GI_number: 15674326 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Competence protein ComGC # Organism: Streptococcus pyogenes M1 GAS # 10 94 11 94 108 61 40.0 4e-10 MKHLRRFWPKRQRAFTLIEMVIVVAIIATLVLLISPNLLAQKDHADKRTNDAFTTTIKTQ VELYEENTGKKPASFQEMVDAHYLTQKQEEQAEDKKLAIGDFAKGGE >gi|300495894|gb|AEAT01000135.1| GENE 67 66072 - 66509 285 145 aa, chain + ## HITS:1 COG:no KEGG:LDBND_0612 NR:ns ## KEGG: LDBND_0612 # Name: comGD # Def: competence protein comgd # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 145 1 145 145 271 97.0 5e-72 MRQKAFSLLETVITLAIAGMLLGIGEMSFQGFEDKINFDRFCRQAAGLFQEKIRSAAITG KRVVIYNQSSQGKLEVIQDGRHESLKIPDGVTVYTNFNNTSGWTISSDGTTSQAFTLRII KNDQGKKEYGKAYTFLLSWGKINKK >gi|300495894|gb|AEAT01000135.1| GENE 68 66457 - 66765 197 102 aa, chain + ## HITS:1 COG:no KEGG:Ldb0683 NR:ns ## KEGG: Ldb0683 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii # Pathway: not_defined # 15 102 1 88 88 152 97.0 6e-36 MGKHIPFCCRGGRSIKSKQEGFLALEAVVALAIVCIALTAMLTCLSGLKKLEQESSQRAN QALAYRMLKECPVKRVKVRDHEYVLTGKGDLYDETQQKICQK >gi|300495894|gb|AEAT01000135.1| GENE 69 66731 - 67351 436 206 aa, chain + ## HITS:1 COG:no KEGG:LBUL_0615 NR:ns ## KEGG: LBUL_0615 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 2 206 1 205 205 322 98.0 5e-87 MMKPSRRFARSKAFSLLETMVALLVTVICLSLLSSSLKLFTLFEKDRHDPNELVFSYVQF AKFLKKDSQRTYIDLENSNPLKIMFIKEEKKEDKEGEEKIDKAGYVLEMDNGGNNLRVRR SGPDGGNMTLLPIWGATFAARDGLMEVHINEKGKRSILYFKVDKAPEKEKEAEKKTEDQK TDQAKPAKGERPADQRTTASHDNSAD >gi|300495894|gb|AEAT01000135.1| GENE 70 67494 - 68492 1128 332 aa, chain + ## HITS:1 COG:lin1617 KEGG:ns NR:ns ## COG: lin1617 COG0827 # Protein_GI_number: 16800685 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Listeria innocua # 5 330 7 331 332 160 32.0 4e-39 MNRIEELFGQTLEAVECLQEALNVSLADALVETFDNLESGKIRVEMGAPDQKTVAELKER YAALDYKNWSKAQKEQVYGLLVLKAVNDDGRDANQMPTPPLLATVLTLFMDKLLPKRKQV LLDPAVGSGNLLFSVDQQLAAQNHSEDRFDLVGLDNDEEMLNLADVAAHLAGLKADFYCQ DALTGWPVKPDVVVSDLPIGFYANDDNAKNFDLRTKEGHAYAHVLFVEQIVKNLAEDGFA FLLVPQNMLTGTVGADFMPWLASKVYLQAIVQLPSSLFQSKISQKSILIFQNHGQSKPPK EVLLTKLENLKKEESLVALNIKLNEWYTKKDN >gi|300495894|gb|AEAT01000135.1| GENE 71 68526 - 69713 2028 395 aa, chain + ## HITS:1 COG:BS_ackA KEGG:ns NR:ns ## COG: BS_ackA COG0282 # Protein_GI_number: 16079999 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Bacillus subtilis # 1 393 1 395 395 429 55.0 1e-120 MDKILAINSGSSSFKYKLFSLADESVLASGLGDRIGIDGSTFSMKLADGTKHEAEVDLPN QEVAVQTLLDWLKEYGVIADVKEIVGVGHRIVNGGELFPDSAIIDKDNIHKVFDLTNYAP LHNPAEGHGIQAFMNILPDVPQVGVFDTSFHQSMDEVHYIYSLPYEYYEKYKARKYGAHG TSVRYVSGKAAELLGKDLKDLKLVVCHLGSGASVTAVKDGKCYDTSMGFSPLAGVTMGTR SGDVDPSVLQYIMKKEGITDFNEMIDILNHKSGLLGLSGISSDMRDIRNSDDKRAKLADA VFINRVVRYVGSYIAEMGGADAVVFTAGIGEHDDEVREGVMKSLSFMGVDFDDAANKAAN EGFITKEDSKLAGLIIPTDEELMIERDVVRLAKLK >gi|300495894|gb|AEAT01000135.1| GENE 72 70072 - 70254 177 60 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTMIVETSDGMRLDRGSIPLISICLKKARVIDARVFFVEFLSSKMKEFSNICNDKLERAV Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:46:15 2011 Seq name: gi|300495879|gb|AEAT01000136.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00173, whole genome shotgun sequence Length of sequence - 16442 bp Number of predicted genes - 16, with homology - 16 Number of transcription units - 4, operones - 4 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 554 156 ## COG2189 Adenine specific DNA methylase Mod 2 1 Op 2 1/0.000 - CDS 559 - 786 167 ## COG3655 Predicted transcriptional regulator - Prom 833 - 892 5.5 - Term 884 - 922 -0.4 3 1 Op 3 . - CDS 1168 - 2514 1865 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 4 1 Op 4 . - CDS 2517 - 3230 786 ## COG3548 Predicted integral membrane protein - Term 3241 - 3279 5.5 5 2 Op 1 2/0.000 - CDS 3291 - 4217 1489 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase 6 2 Op 2 21/0.000 - CDS 4253 - 5683 2389 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 7 2 Op 3 31/0.000 - CDS 5689 - 7131 371 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 8 2 Op 4 1/0.000 - CDS 7131 - 7436 436 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 9 2 Op 5 4/0.000 - CDS 7448 - 8566 1509 ## COG4851 Protein involved in sex pheromone biosynthesis 10 2 Op 6 5/0.000 - CDS 8590 - 10605 2769 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 11 2 Op 7 . - CDS 10616 - 12877 3511 ## COG0210 Superfamily I DNA and RNA helicases - Prom 12905 - 12964 5.1 - Term 12917 - 12954 3.0 12 3 Op 1 . - CDS 12967 - 13620 990 ## COG1705 Muramidase (flagellum-specific) 13 3 Op 2 . - CDS 13634 - 14257 916 ## LBUL_0411 hypothetical protein - Prom 14290 - 14349 7.9 - TRNA 14372 - 14460 58.1 # Leu AAG 0 0 - Term 14400 - 14436 -1.0 14 4 Op 1 . - CDS 14491 - 14952 460 ## COG3091 Uncharacterized protein conserved in bacteria 15 4 Op 2 . - CDS 14992 - 15510 814 ## COG1131 ABC-type multidrug transport system, ATPase component 16 4 Op 3 . - CDS 15528 - 16106 632 ## LDBND_0403 hypothetical protein - Prom 16326 - 16385 5.0 Predicted protein(s) >gi|300495879|gb|AEAT01000136.1| GENE 1 2 - 554 156 184 aa, chain - ## HITS:1 COG:STM0357 KEGG:ns NR:ns ## COG: STM0357 COG2189 # Protein_GI_number: 16763737 # Func_class: L Replication, recombination and repair # Function: Adenine specific DNA methylase Mod # Organism: Salmonella typhimurium LT2 # 1 183 1 194 652 167 40.0 1e-41 MIKDQLTKNNTVGPNTREIEKLRKVFPHYFDKNGDFMIDRLKELLSSTDVEMRKEGYELK FLGKSYAKLLTSTETKTVLTPIIEHNTKGINAESKNVYMVGDNIDAIKHLLKSYSNEVDC IYIDPPYNTGKKDFVYPDTFEFSKESLAKSAGIEEDEAERILNMAGKSTHSAWLTFMYPR LLLV >gi|300495879|gb|AEAT01000136.1| GENE 2 559 - 786 167 75 aa, chain - ## HITS:1 COG:SPy0544 KEGG:ns NR:ns ## COG: SPy0544 COG3655 # Protein_GI_number: 15674643 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 1 67 1 67 69 69 53.0 1e-12 MAFSYNKLWKILIDKNMNKTALRDAVEITPSTLARLSKNQNVTMEVLGKICEEFHCDIGD IVEYVHNENSKAEKR >gi|300495879|gb|AEAT01000136.1| GENE 3 1168 - 2514 1865 448 aa, chain - ## HITS:1 COG:SP1029 KEGG:ns NR:ns ## COG: SP1029 COG2265 # Protein_GI_number: 15900900 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 448 2 451 543 402 48.0 1e-112 MKKNEIVEVEITDLSYEAMGVGHVNGETVFVNNALPGEVVKAQILKDKKSYAFARISEIV KESPDRVKVPLRQYVQTGLTGLAHLKYDKQLEFKQKQVKELLSKAHLDQIKVAETLPSPL ETGYRNKAQVPVRMVKGQLEIGFFRRHSHDLVPLEDFFTNDPEIDRVLLAVRDILREKRI PAYDEEKHQGQVRYLEVRRGTATGDMMVVLVCLDRDFPGLHAVVDEIKEIAGVKSIFLNH NPKRTNVILGEHDYHLWGKRYIDDKIGDLTFEISPQSFFQINSLQTPRLYKLAIDQAGLT KDDLIVDAYSGIGTIGLSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYAGKAEE LMPKWAAEGLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEA GYTTDLVSPVDMFPQTPHVETVVLMSRV >gi|300495879|gb|AEAT01000136.1| GENE 4 2517 - 3230 786 237 aa, chain - ## HITS:1 COG:L111003 KEGG:ns NR:ns ## COG: L111003 COG3548 # Protein_GI_number: 15672091 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 43 230 124 312 331 112 37.0 7e-25 MITNIKKELARKRSLQPLSPEEQSEWDRLRQYREKAIKESGAKLAEHVMTFNDGVIAIII TIVLVEIADPLSKSAYQDFFSQIFIYLISFFVVANFWYEIHYTFSFYIMRAGKMTMVCDF AFLASLSLIPVMTKWIMGDLSVLSVVCYGIVYFLVQIFELATEIVGMRSSLPHIKTFRKF WGRFSWLRFIWLFLLNLVFILISFVQPRLGMILYLAFPIINFVMPDNRSQRARKGDK >gi|300495879|gb|AEAT01000136.1| GENE 5 3291 - 4217 1489 308 aa, chain - ## HITS:1 COG:L26628 KEGG:ns NR:ns ## COG: L26628 COG1597 # Protein_GI_number: 15672402 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Lactococcus lactis # 4 307 3 302 342 303 52.0 2e-82 MTKRARLIYNPVSGHEQMPKNVSDILDILEQAGYEASAFRTTPAPLSAQNEATRAAKEGF SLVVAAGGDGTINEVVSGIAFLPKEERPRMAIIPAGTTNDYARALKIPRDDVVAAAKVIL KDKVQKMDVGRADFGDGSQKYFVNIAAAGSLAELTYGVSSDVKSALGYAAYLIKGAEMLP NLSECEMRLTFDKGVYEGKLSLLLLGMTNSIGGFEKIMPNAELSDGLFQLIVVKPSDPGN LLRLMALALNGKHVDDPNIIYTKTTSLKAELIGHNRDDKLSVNLDGEEGGMFPVTFENLR ERIEFYVG >gi|300495879|gb|AEAT01000136.1| GENE 6 4253 - 5683 2389 476 aa, chain - ## HITS:1 COG:BH0667 KEGG:ns NR:ns ## COG: BH0667 COG0064 # Protein_GI_number: 15613230 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Bacillus halodurans # 1 476 1 476 476 574 60.0 1e-163 MNFTSTIGLEVHFELKTKSKIFSPSPVTYGAKPNTETNVIDWGYPGTLPMVNKEVYRLGL MVALATHSHVNPVTHFDRKNYFYPDNPKAYQITQFFKPLAENGYVEVEVHGKKKKIHIHE MHIEEDAGKNTHGTNGFSYVDYNRQGVPLLEVVSEPEMTDPDEAVAYLEKLREIVQFTGA SDVKMEEGSMRIDTNISIRPAGQKEFGTKVEMKNLNSFEHVRLSLAYEQKRQQEILLSGG RVRLSTRRFDTNTGKTVLERVKEGDADYRYFPEPDLAPYHIKQEWVDEIAANLPKTADDR RKIYVDEYGLKPYDANVLLQNKESSDFFDATVAAGADPQQAANWINTQVNGYLNEKHAEL KDIALTPENLAAMIKLISDGTISSKIAKKVFAETVANGTDPKKYVEENGMAQLSDESVLA PMVKEVVDANPQSVEDYKNGKDRAIGFLVGQIMKQTRGKANPKVINKLLLADLASR >gi|300495879|gb|AEAT01000136.1| GENE 7 5689 - 7131 371 480 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 15 449 16 436 468 147 30 5e-35 MNYLNETIDSLNDKLKSGAVSADQLAKDTIANIKKTDEKINAFITVDEDAKPAEDLDFNN KLAGVPIAIKDNIITNGLKTTAASHILYNFEPVYESTVVAKLKAAQATIIGKTNMDEFAM GSSTETSYFGDTKNPWNLNKVPGGSSGGSAAAVASGEVVAALGSDTGGSIRQPASFNGIF GIKPTYGRVSRWGLIAFASSLDQIGVMSKRVKDSAEVLNVIAGADDRDATVSEKEVPDYT SFLGKDVKGLRVAVPKEYMSDAVEEGVRKAVEAQIELLRANGAIINEVSLPHTKYVVPTY YIIASSEASANLERYDGIRYGYRAEAKNLDEVFLKSRSEGFGDEVKRRIMLGSFALSAGA YDKFFLQAAKVRTLICQDFDKIFEDNDVIVGPVSTETAFDLNSEISDPVKMYNNDILTIS ANMAGIPAASVPAGLSETTGMPVGFQIMAKRFDEGHVFQVADFIERSNKFYEQTPAGLED >gi|300495879|gb|AEAT01000136.1| GENE 8 7131 - 7436 436 101 aa, chain - ## HITS:1 COG:SP0438 KEGG:ns NR:ns ## COG: SP0438 COG0721 # Protein_GI_number: 15900356 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Streptococcus pneumoniae TIGR4 # 3 96 2 95 100 82 50.0 2e-16 MEKVTNDTIKHVAALAKLEFSEEELAKFTPQMGKILEMAEELQAVDTTGVEETVQVVDRD TVFREDVPEKWQTREEMMKNVPDKSNGFVKVPVIIDKDDNQ >gi|300495879|gb|AEAT01000136.1| GENE 9 7448 - 8566 1509 372 aa, chain - ## HITS:1 COG:lin1869 KEGG:ns NR:ns ## COG: lin1869 COG4851 # Protein_GI_number: 16800935 # Func_class: R General function prediction only # Function: Protein involved in sex pheromone biosynthesis # Organism: Listeria innocua # 5 369 12 370 371 199 34.0 7e-51 MASCSLLLAACGNLKNSDLASNSTTTTSEAKKYETTSSTDGGYSVLLKKGVYKTSPISGL EATNYDNSVDESAMERGLIRVSKKVFSTKDYVIQEGQQLDETTVTNWLGRYSKSNKDGLN LKNNGKTGSTTRNPIILQQIMEEDFYVKSGSSYKLAGISISLGLNSVDYYTKTTDGAEYS TKISLAKRRAFGQKTANTIVSRLHAKKKLKNIPIMVGLFSKTDTDSLVGGTYFSYGTASA NSSKISKWSSVNEKTQVLPTADGASAVSASDESKFTSFKDEIEDYFPNVSGVTATLRYYD GKLAYESIAITTQFYGYLQVQSFAQTVMSRAKKYLGTSSPVEITISSVNDTQAVVAKETA TGSYRMHIYGGN >gi|300495879|gb|AEAT01000136.1| GENE 10 8590 - 10605 2769 671 aa, chain - ## HITS:1 COG:L0304 KEGG:ns NR:ns ## COG: L0304 COG0272 # Protein_GI_number: 15672401 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Lactococcus lactis # 9 661 4 652 654 645 52.0 0 MAESLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDKKYARLLELEAAYPELKSAD SITQRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRVQKAIGHPVAYNVELKIDG LSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAITTEVRGECYMSKEAF AKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAGIDSQHQAI GEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDDLALQADLGNT VKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVQLAGTTVARASLHNPDL LAKLDIRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPYEVPTKCPSCGEDLVHLDKEVA LRCINPSCPAQVEEGITHFASRQAMNIAGLGPKIVKQLIAKDLVHNVADLYYLTADDLSQ LDHFKEKSINNLLAAIDQSRKNSVELVLFGLGIDNVGGKAAQLIARKFKNMSKIASASVQ ELTAIDTIGMTIAESLTAYFQQEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVL TGKLAHYSRAEFTKKLQALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEA ISKIEEKDTEK >gi|300495879|gb|AEAT01000136.1| GENE 11 10616 - 12877 3511 753 aa, chain - ## HITS:1 COG:SPy1267 KEGG:ns NR:ns ## COG: SPy1267 COG0210 # Protein_GI_number: 15675225 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Streptococcus pyogenes M1 GAS # 6 752 4 771 772 745 51.0 0 MSEATILQGLNPQQVQAVKTTEGPLLVIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAI TFTNKAAKEMKEREVKLLGDQAESIWMSTFHALCVRILRRDGHLIGYDRDFSIADPSEQV TLVKRILRQLDLDPKQYLPRNILSQISNAKNRLQTPKQYEASAVGPFEKVVADVYKKYQA SLERDQILDFDDLIMQTLTLFKASPDTLAYYQQKFRYLLVDEYQDTNEAQYELCRLLADG YHNICVVGDADQSIYGWRGANMENILNFEHDYKNAQTVKLEQNYRSTGHILKAANSVIDH NENRKAKKLWTDKGDGEKVHYYQAQSDRDETRFVLAKIKEEVDQKKRRYQDFAVLYRTNA QSRGMEETLVEANVPYQIVGGHKFYDRKEIKDIMAYLKLVANPSDSMSFNRIINVPKRGI GQATTSKLAAFADEMGGGIYEAIRNVELAPISSAAAKKLLAFSDQLTAAIAYAQDHTVSE LTDKILEDFGYIKALKEEEAQGSLEAAARLENLQEFATVTKRFDDNYNEEENPDSSRLSD FLAEVSLLSDQDDLEESDDRVTLMTLHAAKGLEFPVVFLIGMEDNIFPLSRAIKDEDPNQ LEEERRLAYVGITRAREELYLTSAYTRMMYGSKQYNSQSRFIGEIKDEDLDIVASTAPKS STSFLDLDRLPFAKKSQAKAAQPAKIHRASKAAGAVGAEKKGWHPGDQVEHKSWGKGVVI KVTGSGEDMELDIAFASKGNKRLLAAFAPIKKI >gi|300495879|gb|AEAT01000136.1| GENE 12 12967 - 13620 990 217 aa, chain - ## HITS:1 COG:L2183 KEGG:ns NR:ns ## COG: L2183 COG1705 # Protein_GI_number: 15673347 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 6 216 6 204 209 167 43.0 1e-41 MAGHRKTRKGKQTTTILVVRVFAIILLCLGLFVAFRYYRRQALQQEQIRQAELAKQEAAA KLLRQKKAFIKKVGPISQKVDKGTGLLPSITIAQACLESNYGQSALSQKYNNLFGVKGTN PNTSAVMTTREYSNGKWVTVKARFQIYDSYEASIRAHVRLFQQGTSWNKDQYKDVLAAKD YKSQAKALVTDGYATDPDYSTKLINLIEQYNLNKYDN >gi|300495879|gb|AEAT01000136.1| GENE 13 13634 - 14257 916 207 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0411 NR:ns ## KEGG: LBUL_0411 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 207 1 207 207 310 99.0 2e-83 MYDSEARQKTLNLTVSAVFVAILLLEAFIPNVGYITILPGLPAITTIPLTVAVFASLRGP KAGAAFGLVWGLTSLLRAYAAPNGLVTILLFQNPLIALLPRLAAGWAAGLAGQLADKWEK ESRKPLAYALSGLLASAVNTFMVILLSDLVYFSHPQKLALALGAKSGQSLLVILFTALAV NGILEAVFSGLITPLITAPLKKRLKRR >gi|300495879|gb|AEAT01000136.1| GENE 14 14491 - 14952 460 153 aa, chain - ## HITS:1 COG:BH0532 KEGG:ns NR:ns ## COG: BH0532 COG3091 # Protein_GI_number: 15613095 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 2 149 1 151 151 142 51.0 3e-34 MISEQELQQLVESISLESFSRPFLHQAKINRRLKTTGGRYQLSDHHLEFNPLFLKEENLH YLPGIIKHELVHYHLHLAGLGYQHKDRDFKLLLQKVGGSRYAPRLEENKRSRWHYRCRQC GQDYWRQRQVNVKKYFCGRCRGKLEKIAGPLAK >gi|300495879|gb|AEAT01000136.1| GENE 15 14992 - 15510 814 172 aa, chain - ## HITS:1 COG:SP0707 KEGG:ns NR:ns ## COG: SP0707 COG1131 # Protein_GI_number: 15900606 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 1 129 4 141 215 88 34.0 7e-18 MLKVAHVKKSFKKLAVLKDISLETQAGELVHISGVNGCGKSTLFKIIVGLLKADSGEIHT DKDDYLGALIENPGFIEYETAWDNLTFLSHFNHRFQPEKTRDLLKAFDLDPDNPQSVGNY SVGMRQKLGFVNLMKDLRSENKTVIVASHDEIPGLVYDRRLRMKDGILLAEE >gi|300495879|gb|AEAT01000136.1| GENE 16 15528 - 16106 632 192 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0403 NR:ns ## KEGG: LDBND_0403 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 37 192 1 156 156 260 100.0 2e-68 MLKTRYQRLIAITLFLDFVVSLGCGLQFAMDGGEGEMPMYYLNANLISLYIQPGLTVMAA VQILSFRSVRPLLAPRGKMDYFDQRLAQLLFLDLAIYLVFSIVPYFFDKNPCFRYGPAWK GTLLLLMHYLLFIACFMLILLCIKTKYPFFIIVFASTVPILYHYWLEKSWLLPKYANIYD PLWRAIHHMYIL Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:46:29 2011 Seq name: gi|300495855|gb|AEAT01000137.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00049, whole genome shotgun sequence Length of sequence - 21776 bp Number of predicted genes - 23, with homology - 22 Number of transcription units - 14, operones - 8 average op.length - 2.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 4/0.000 - CDS 53 - 1651 1700 ## COG0286 Type I restriction-modification system methyltransferase subunit 2 1 Op 2 . - CDS 1665 - 4685 2503 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases - Prom 4840 - 4899 6.3 + Prom 4919 - 4978 4.4 3 2 Tu 1 . + CDS 5016 - 5858 798 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases 4 3 Op 1 . - CDS 5777 - 6133 343 ## HMPREF0424_0748 hypothetical protein 5 3 Op 2 . - CDS 6139 - 6393 104 ## Clocel_0790 hypothetical protein - Prom 6438 - 6497 4.8 - Term 6466 - 6511 7.1 6 4 Tu 1 . - CDS 6528 - 7727 1413 ## COG0133 Tryptophan synthase beta chain + Prom 8055 - 8114 3.0 7 5 Op 1 . + CDS 8166 - 8810 813 ## gi|300813162|ref|ZP_07093538.1| hypothetical protein HMPREF9264_0667 8 5 Op 2 . + CDS 8831 - 9097 296 ## gi|300813149|ref|ZP_07093525.1| hypothetical protein HMPREF9264_0668 - Term 9500 - 9543 3.2 9 6 Op 1 . - CDS 9561 - 9881 240 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit 10 6 Op 2 . - CDS 9912 - 10946 1333 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - Prom 10987 - 11046 8.6 - Term 11066 - 11100 -0.1 11 7 Tu 1 . - CDS 11134 - 11394 331 ## LDBND_0966 hypothetical protein 12 8 Op 1 . - CDS 11553 - 11669 76 ## 13 8 Op 2 . - CDS 11751 - 12338 294 ## LDBND_0964 hypothetical protein 14 8 Op 3 . - CDS 12326 - 12793 306 ## LDBND_0957 hypothetical protein - Term 12884 - 12925 8.6 15 9 Op 1 . - CDS 12929 - 13099 163 ## gi|325125748|gb|ADY85078.1| Hypothetical protein LBU_0893 16 9 Op 2 . - CDS 13122 - 13724 469 ## LBUL_0952 hypothetical protein - Prom 13841 - 13900 4.4 - Term 14014 - 14055 10.1 17 10 Op 1 . - CDS 14063 - 14608 887 ## COG0790 FOG: TPR repeat, SEL1 subfamily 18 10 Op 2 . - CDS 14665 - 15834 1495 ## LDBND_0950 hypothetical protein - Prom 15875 - 15934 5.0 19 11 Tu 1 . - CDS 15973 - 17121 884 ## COG1929 Glycerate kinase - Prom 17232 - 17291 5.5 + Prom 17241 - 17300 4.0 20 12 Tu 1 . + CDS 17354 - 18430 1233 ## COG0582 Integrase + Term 18484 - 18525 2.4 - Term 18399 - 18441 9.2 21 13 Op 1 15/0.000 - CDS 18499 - 19782 1884 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 22 13 Op 2 . - CDS 19782 - 20789 1386 ## COG0540 Aspartate carbamoyltransferase, catalytic chain - Prom 20826 - 20885 3.3 23 14 Tu 1 . + CDS 21195 - 21713 889 ## COG0778 Nitroreductase Predicted protein(s) >gi|300495855|gb|AEAT01000137.1| GENE 1 53 - 1651 1700 532 aa, chain - ## HITS:1 COG:SPy1906 KEGG:ns NR:ns ## COG: SPy1906 COG0286 # Protein_GI_number: 15675719 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Streptococcus pyogenes M1 GAS # 1 512 1 513 526 580 57.0 1e-165 MAEENSKVSLQSGLFAAADVLRSKMDANEYKNYLLGTVFYKYLSDQQLYKLAEDAGEDDI TLDEAQKIYEESLEEEDLLEEVKDELGYLIEPEYTYTKILDNANDGSFQLNQLGDAFNKL ESQGSSFEGLFDDYDLYSKRLGQNLQKQTDTIAGVLKAIGKLELVKTPGDTLGDAYEYLI SQFASESGKKAGEFYTPQEVSELLARLTLVGKDYSSGMSVYDPAMGSGSLLLNFRKYVPN SSRITYYGQEINTSTFNLARMNMILHHVDLANQKLRNGDTLDEDWPAEETTNFDSVVMNP PYSLKWSADKGFLDDPRFSKYGVLPPKSKADYAFLLHGFYHLKHSGAMAIVLPHGILFRG AAEGKIRQKLLEEGAIDAVIGLPANLFYSTGIPTTIVVLKKDKQDRSVLFIDASKEFEKV KTQNKLRQEDIDKILKTYEERPADVEKYAHLASFDEIKENDFNLNIPRYVDTFEPEPEID LRDVAKELRDIDQQINENEKELVGMLKELTSSDDDIMAGLQSIIEDFEEEIR >gi|300495855|gb|AEAT01000137.1| GENE 2 1665 - 4685 2503 1006 aa, chain - ## HITS:1 COG:SPy1904 KEGG:ns NR:ns ## COG: SPy1904 COG0610 # Protein_GI_number: 15675717 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Streptococcus pyogenes M1 GAS # 4 1001 8 989 992 773 44.0 0 MTLESQLEDNLIAQLTQDVHQWKFRDDLRTVDQLWDNFFRILESNNKDQLNDHPLTPNEK MTVRTAIVKPTFYRATEFMVGANRQVRYHLRREDSSIPDADLLILDNTNIAGGNSVYEVV HQVQLQKKTALNQDRRFDVSLLINGLPVIHIELKAPNVPYKKAFNQIQKYIDEGQFTDIY SFVEMFVVTNGTQTRYISAGQNLNAKFLTAWVDKNNKRVDNYLSFAEEVLSIPAAHHMIA DYVVLDSENKSVILLRPYQIHAIQAIFKASRESKSGYIWHTTGSGKTLTSYKVARNLLQI PSIDKSIFLIDRKDLDMQTTTAFKIYANNDTISVNETNNSYDLADQLTDGDRTVVVTTRQ KMQNMFKRIDELDQLPKRYENLKNMRLAFIVDECHRTITPSQKREIDKFFNRKPLWYGFT GTPIFNENARAKNGQDARTTEELYGPVLHKYTIGDAIRDKMVLGFSIDNQGGSNEDGDEE DTKKMDQIYRSKAHMHSVATAVIKAAYRKQGLISGKKYSAILTTSSIEQAQKYYRIFKKI IDGEDEEFKIPERIKKVAPDFPKIAITYSVSENEDDSESVQDEMKQSLADYNAVYGTNFS MAELDQYNQNVNARLARKKAQYQADNQRLDLVIVVNRLLTGFDSPSLSTLYIDRPPMSPQ DMIQAFSRTNRIFDKDKTWGQIVTYQYPKTFSEKIDDAIVLYSNGGEKYAVAPSWEESKQ SYVSARSKIDMYSFDADGPSIYDASKEEKKKFVKAFQEFDKALAAIKTYDELDTEEGLMQ LGVSDITPDDWEAMRGVYEDILDDLRKDPDEDPDHNDDIDDEYELESFGQKEIDEHYIMN LIQAFLPESSDNQEKASGNEISPETVKEINGYIDELAKTNELLAEIMRKLWQQILQDPAK YAGKQVDELLESLIDQELQSIMREFADKYKVDYDQFRYVMANYDPKLKGNKQKGMNDLLH KERFVDYLNDNPDSDLNKPYRWKSEVREQAKQYYVDKIGPLINREA >gi|300495855|gb|AEAT01000137.1| GENE 3 5016 - 5858 798 280 aa, chain + ## HITS:1 COG:XF1747 KEGG:ns NR:ns ## COG: XF1747 COG0702 # Protein_GI_number: 15838348 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Xylella fastidiosa 9a5c # 2 229 3 213 213 101 30.0 2e-21 MKLLILAANGQIARIVEERILTEDKFKDIDLVLLLRRASHLQSLKDRYPDRVTLVDGDIN NKQVVVDAAKGCDMIFSAVVDHDDAGNNRPTKNIIAAAEANKISRVIETSLLGIYDEVPG KFGKWNRDFCFGGNPEGSSPVNADQLLEDSGEDSGLDYTTLRLPWLNNRPEAKYSITHRH DTYVDVSGSRQSMADVVLKIMADPTFGSRDSLGIADPDTDGLTRPVYFKKNRPAQPAQCL NLMTLSVLNHHFLHYSIPYPITFSSTSLMTSSEMSVTAMR >gi|300495855|gb|AEAT01000137.1| GENE 4 5777 - 6133 343 118 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0424_0748 NR:ns ## KEGG: HMPREF0424_0748 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis # Pathway: not_defined # 1 115 138 252 252 196 79.0 3e-49 MVERSLHFLEVYGPKLLDGFTFEGGYTDTVSKGAGDLTTVDTLWDFKVSKRKVQKEHTLQ LLMYWRMGLHSVHPEFQSIKYLGIYNPRLNQVYRIAVTDISEDVIREVEEKVIGYGML >gi|300495855|gb|AEAT01000137.1| GENE 5 6139 - 6393 104 84 aa, chain - ## HITS:1 COG:no KEGG:Clocel_0790 NR:ns ## KEGG: Clocel_0790 # Name: not_defined # Def: hypothetical protein # Organism: C.cellulovorans # Pathway: not_defined # 1 84 45 129 250 90 54.0 2e-17 MVGLAVDYLTRFMSGASPQEAFEISLRGASNLGEDALAAKLLAEVKGLEDSSITNAIKLT RFDVYYRAGLSYKPVSEIKQRFRT >gi|300495855|gb|AEAT01000137.1| GENE 6 6528 - 7727 1413 399 aa, chain - ## HITS:1 COG:FN0317 KEGG:ns NR:ns ## COG: FN0317 COG0133 # Protein_GI_number: 19703662 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase beta chain # Organism: Fusobacterium nucleatum # 5 395 2 392 395 504 64.0 1e-142 MTEATAEKKEMFYGEFGGQYVPAEIQAELDEIAEEFEKVKDDPDFNAELDQLLRDYSGRS TPLYFAESLTKRLGGAKIYLKREDLNHLGAHKINNALGQVLIAKRLGKKRIIAETGAGQH GVATAAVAARFGMKCTIYMGAKDCERQRLNVFRMRLMGAEVTPVTAGTQVLEDAVAAAFQ DLAQNLDTTFYLVGSAVGPYPYPQMVERFQRVISKEARQQFLDQVGRLPDAVIACVGGGS NAIGAFGEFIPDKEVRLIGAEGAGKGADTPENAATLTNGKVGINDGMKSYVLQDDEGNIL PAYSISAGLDYPGIGPVHSFLKDSGRAEYYPITDDEAVAAFKLLSETEGIIPALESSHAL AQAIKMVPEMDPDQIVMVNLSGRGDKDVNQVAAYLGEGI >gi|300495855|gb|AEAT01000137.1| GENE 7 8166 - 8810 813 214 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300813162|ref|ZP_07093538.1| ## NR: gi|300813162|ref|ZP_07093538.1| hypothetical protein HMPREF9264_0667 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] hypothetical protein HMPREF9264_0667 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 1 214 6 219 219 324 100.0 2e-87 MAGALAAAVTVGLVAAPKAEASSAKYTIIHYRTVKKYKHGMKANFSYQLPQLKGSSAAVK KINKDIKKSLVTEKKNAKQLFNYAKDGANNGFKNLSYYDATTAKITYNKNNVVSFKSEMK WWAGGVAEDNIGSWTYSLKSGKKLTVYDVAQGSQASIKKKLVKGAKKFGAGNVYFKSTNL KKMNFVLKKGKVYVYPQVYGYNMDKYFTLPARYK >gi|300495855|gb|AEAT01000137.1| GENE 8 8831 - 9097 296 88 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300813149|ref|ZP_07093525.1| ## NR: gi|300813149|ref|ZP_07093525.1| hypothetical protein HMPREF9264_0668 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] hypothetical protein HMPREF9264_0668 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] # 1 88 1 88 88 122 100.0 8e-27 MKKKYVVASALALAMSVGLVTSPKAEASSSAKCYFKQYKTVRKYKHGIKAIFAYKLPQLK GNSAAIKEINKSLRKNYTAELKAQEGTI >gi|300495855|gb|AEAT01000137.1| GENE 9 9561 - 9881 240 106 aa, chain - ## HITS:1 COG:L178933 KEGG:ns NR:ns ## COG: L178933 COG0599 # Protein_GI_number: 15673518 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Lactococcus lactis # 3 103 2 102 102 129 59.0 2e-30 MAEKQTAGRDYLGKLAPKFAELNDDVLFGEVWAREEKLSARDRSMITIAALFSAGLYPQL KAHLELGKKHGITKEEAVEIVTQLAFYCGWPKAWSTFPLIEEVYGD >gi|300495855|gb|AEAT01000137.1| GENE 10 9912 - 10946 1333 344 aa, chain - ## HITS:1 COG:L190278 KEGG:ns NR:ns ## COG: L190278 COG1063 # Protein_GI_number: 15673531 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Lactococcus lactis # 1 343 1 347 348 421 60.0 1e-117 MKAAYFVKKGLVEAREVEDATLEQDTDAVIRVIRACVCGSDLWWFRGISDRPEGTVGHEA IGIVEAVGDKVDNVKVGDFVIAPFTHGCMKCKICKAGFDGNCPNVEVGGNKGYQSEKLRF KNASALVKIPGQPSDYTEEQLNDLLTLSDVMATGYHAAASAEVKPGDAVAVIGDGAVGLC GVIAAKLLGAEKIILLSHHEDRAALGKEFGATDIVSERGEDAVKKVLELTDGYGADAVLE CVGASSSIDQAGQIARAGAIVGRVGVPQKEPETNKFFWKNVGWRGGIANVTTYDQEVLLG AVLKGEIHPGKVFTKSFDLDHVQDAYEAMDQRQAIKSLLVVADK >gi|300495855|gb|AEAT01000137.1| GENE 11 11134 - 11394 331 86 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0966 NR:ns ## KEGG: LDBND_0966 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 86 93 178 178 121 94.0 9e-27 MAEGDGRLGPVELQELLAANNMSEEEFAVREFEKGTTIVTGGENGSTKSITPYYLDEKTG YVQAGAELEVKNPVDKVIVIGTKESN >gi|300495855|gb|AEAT01000137.1| GENE 12 11553 - 11669 76 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKSEEEIARVELDAGLKEVDDGDKNEALAKLRLSLGWN >gi|300495855|gb|AEAT01000137.1| GENE 13 11751 - 12338 294 195 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0964 NR:ns ## KEGG: LDBND_0964 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 137 47 183 183 220 91.0 2e-56 MLDMIKRSPATYKTAKPENLSLQLCNLKGLKEKTTEELLSREQEEELQAFMQEIGQGTAY DKISDFCKNPLFIEPLRKLLPYSQNLSTKLTKFERNQRLDRRKYKDALNLLELLYPKGSV TTTEERMRQYVKRIVKIQTERRVYVVRTQEVSESFSSIFKEKDGMMYLAMRRPLPGKAAG LNWLTETRRKVSQLL >gi|300495855|gb|AEAT01000137.1| GENE 14 12326 - 12793 306 155 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0957 NR:ns ## KEGG: LDBND_0957 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 125 1 125 159 249 96.0 3e-65 MYGFRELGAEIVPYHFIDEIEEKIGPKDIVLDYIEQCQWVFKEFGHPTYMDCYPEILKPF LKRKIWRDTINSFSRNEKKWLAGYFIKPVKDKAFTWKIIRNTADLIACGSSMEDYEILVS EPICISRGTVLKDILSTFGKRLNTKKKNTPRECWI >gi|300495855|gb|AEAT01000137.1| GENE 15 12929 - 13099 163 56 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|325125748|gb|ADY85078.1| ## NR: gi|325125748|gb|ADY85078.1| Hypothetical protein LBU_0893 [Lactobacillus delbrueckii subsp. bulgaricus 2038] # 1 56 277 332 332 63 96.0 6e-09 MFTISFLILLIFLTIVAVPVAIAAFLLKVSFKILGWLIGICFILALLISLLLIIVM >gi|300495855|gb|AEAT01000137.1| GENE 16 13122 - 13724 469 200 aa, chain - ## HITS:1 COG:no KEGG:LBUL_0952 NR:ns ## KEGG: LBUL_0952 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_BAA-365 # Pathway: not_defined # 1 131 1 131 138 223 96.0 3e-57 MLDGFSGQYRIWLVINKFLNHSLIPFLGYFVIHIWVRHSKYDRLLAVLLPGNVLFQLASI ATGWTFSIDQNNHYHQGRYYYVYFIICIIVIFAIVSAYHQFEQKTFSGDRLFMFYTFFVV FLGIVIQEVSGGALRMTSLTIAIGMCFLLNRFNNFTQKVSDMKISRNNVVMRTDIMTGIV KARRLTVRACLGYLKLVFRG >gi|300495855|gb|AEAT01000137.1| GENE 17 14063 - 14608 887 181 aa, chain - ## HITS:1 COG:PM1611 KEGG:ns NR:ns ## COG: PM1611 COG0790 # Protein_GI_number: 15603476 # Func_class: R General function prediction only # Function: FOG: TPR repeat, SEL1 subfamily # Organism: Pasteurella multocida # 9 146 30 160 172 60 28.0 2e-09 MDKIGATWLDRGAEAYRQGDYELALQCYKKAADYGNSQAMCNLGYIYAFGRVGEADQEKA FYYFTQASLAGNPNAFYKLGDAFRFGNFVKRNDEIAFQYYSMAESVLQEGDEDMIAEIDY RLALCYARGWGTDQRWDLALKYINEAQLYAYRNKQHGEYNWQKTSQRINKLHDEIVSEMF S >gi|300495855|gb|AEAT01000137.1| GENE 18 14665 - 15834 1495 389 aa, chain - ## HITS:1 COG:no KEGG:LDBND_0950 NR:ns ## KEGG: LDBND_0950 # Name: not_defined # Def: hypothetical protein # Organism: L.delbrueckii_bulgaricus_ND02 # Pathway: not_defined # 1 389 1 401 401 663 93.0 0 MKEYYLDYREQLRNILDALDDSSTSLRLGAVAIENLLTLARVDLDDEDEEDSDDSDAIEE ADSGGDLADAETEDKKQVKIIRHEEPTASIHYQLCRFSRALKGGSFYTEQGDLVSEINEL AVKNLNVENGDLVELDPSSQPPRVVRMVEAGNLPSNIATMSYGVVERDPAGDLYVSRSAM GESLSECAGIDRYEVPAIIDARQTETGFIHEGDIVDLAWYKNSPSNMIVRWVSQTKGEEA PKKKKPAEKKVKSEKEDKDKGESVTTLNFDLHGRSVAVVIGNELRSQEIQKMVGEHHGRC KVIDAFKFSDTESFYKHALKRADVTVMVQNLNKHSTSKALRKYAKRLAIADSAGLSSIER AIYRAMHGLPAYETSTQPIAYPVKELALS >gi|300495855|gb|AEAT01000137.1| GENE 19 15973 - 17121 884 382 aa, chain - ## HITS:1 COG:L79277 KEGG:ns NR:ns ## COG: L79277 COG1929 # Protein_GI_number: 15672838 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Lactococcus lactis # 3 374 4 376 385 376 56.0 1e-104 MLKFITASDSFKESLSAKAACQAMADGIKRVFPEAEVIQVPMADGGEGTVDAILSCIPGE KVEKMVTGPDGRRLLASYGLINDGECAVIETAAASGLGLLAKKDRDPMTATTFGTGELLL DALKRGVKKIIVGLGGSATNDGGAGLAQALGVRFLDKNGQELPFGGGSLDQLAGIDTSGL APRLKEAEIILASDVTNPLTGPNGASAVFGPQKGADKEMVQKLDASLHHYAAVIKEQVGK DVENVPGSGAAGGLEAGFLAFSNCQMQAGAQIVIEESHLAEKMRDADYVFTGEGGIDFQT KFGKTPYAVAQVAKKLGIPVFALAGQVGDGIDSLYEAGFTGIFGILPGICSLPEALAGGG GNLARTSENVARVVKAARVNLQ >gi|300495855|gb|AEAT01000137.1| GENE 20 17354 - 18430 1233 358 aa, chain + ## HITS:1 COG:SP1159 KEGG:ns NR:ns ## COG: SP1159 COG0582 # Protein_GI_number: 15901024 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Streptococcus pneumoniae TIGR4 # 1 348 1 355 356 276 46.0 4e-74 METKKYLSLIDREMAQMPDFVKEYQLETRHSLTTSYQYLTEIRRFFSWLIAENFTQAKSP SQVLPSDLEKLSRSDVMLYLDKLEHSRNKQGHLNSPTTVNRSLNALRSLYKYLTITADKN NGEPYFDRNVMLKINSLPYTSTLNYRAHALEAHMYTGNLKYQFMDFLDQKFAGLCSGRAL SSFKQNKERDMAVIALILGTGIRVSECAGVDIKDLNLKEATLDITRKGGQRDSVPVADWT LPYLEKYLAIRADRYKAPATNKAFFLTSYHQECRRMTTNAIEKMVGKYSAAFGHPLTPHK LRHTVASELYQATKDQVMVAQQLGQKGTSATDLYTHVDQREQRAALNASAKQNKSSSD >gi|300495855|gb|AEAT01000137.1| GENE 21 18499 - 19782 1884 427 aa, chain - ## HITS:1 COG:SA1044 KEGG:ns NR:ns ## COG: SA1044 COG0044 # Protein_GI_number: 15926784 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Staphylococcus aureus N315 # 4 421 3 421 424 443 53.0 1e-124 MAILLKNGLVYQEGEFINEDVLISGSKIQAIGLDLPEEGAEVYDLKGKLLAPGLVDIHEH YREPGFTYKETIKTGSEAAARGGFTMVCTMPNVDPVPDDLETFEKQVALNEANSCVHLKQ YGAITEDLTSDRVVDMAALKEAGAFAFSNDGHGIQQAGTMYEAMQEAAKVGLAICEHIQD DSLYHHGVMNAGKKAKELGLPGILGVSESAQLARDLVLAQATGVHYHACHVSTKESVELI RIAKEYGINVTAEAAPHHLLLSEEEIDGNDGYYKMNPPLRSKEDQFALIEGMLDGTIDLI ATDHAPHSREEKAGDMRKAAFGIIGNETAFACLYTKFVKSGQMDLSLLLDLMSYQPAKLF GLDAGVLAPGKEADLAVFDLDHAEKLAEEDYLSKGVNTPFTGQEVYGMTALTFVSGKLVY KSKHFAD >gi|300495855|gb|AEAT01000137.1| GENE 22 19782 - 20789 1386 335 aa, chain - ## HITS:1 COG:SPy0832 KEGG:ns NR:ns ## COG: SPy0832 COG0540 # Protein_GI_number: 15674868 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Streptococcus pyogenes M1 GAS # 18 329 5 307 311 346 57.0 3e-95 MTTVSQNQVVVETEDEQDNLLRLPYFVSVEQLSADDVLHLLQRAQYFKNGGEVPALSRPI FCTNMFFENSTRTHTSFEVAERRLGLTVIPFDPSHSSVNKGENLYDTELTMASLGIELSV IRHPENAYYNEIIRPKEGQHLQMGLVNAGDGSGQHPSQSMLDMMTIYNEFGHFDGLKIMI VGDLTSSRVARSNMEILNTLGAEVYFSGPEYWYDAEEFSKYGTYVKNIDDEIPELDVLML LRVQHERHNGAEAKTEQLDAKDYNAAYGLNQRRYDMLKDDAIIMHPGPINRGVEWDGDLV EAPKSRYAVQMHNGVFVRMAMIEAVLRGRKLGGLE >gi|300495855|gb|AEAT01000137.1| GENE 23 21195 - 21713 889 172 aa, chain + ## HITS:1 COG:MA1774 KEGG:ns NR:ns ## COG: MA1774 COG0778 # Protein_GI_number: 20090624 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Methanosarcina acetivorans str.C2A # 10 142 41 189 220 58 29.0 5e-09 MKFTKLLKSRKSIRTYTGKPADKKQVKKIIEAAELAPVARGLYENYQLTIINDPKLLKEI DQEAAMMFGDLESHPLYGVPTLILVSAKKQDEMAYASAGIIAHNMVLAAENKGLGACYLF GAAAALATHPETVMKLDLPAGFMPVCGVGIGETEEELTIRDQKLDRIGINEI Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:47:20 2011 Seq name: gi|300495848|gb|AEAT01000138.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00006, whole genome shotgun sequence Length of sequence - 9518 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 4, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 52 - 1113 1249 ## COG3274 Uncharacterized protein conserved in bacteria + Term 1325 - 1362 6.2 + Prom 1291 - 1350 1.8 2 2 Tu 1 . + CDS 1371 - 2636 628 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 + Term 2649 - 2684 4.4 + TRNA 2731 - 2803 64.2 # Thr GGT 0 0 + Prom 3046 - 3105 1.5 3 3 Tu 1 . + CDS 3130 - 4641 1034 ## COG1002 Type II restriction enzyme, methylase subunits + Term 4880 - 4924 -1.0 4 4 Op 1 . + CDS 5122 - 5970 202 ## COG1002 Type II restriction enzyme, methylase subunits 5 4 Op 2 . + CDS 5972 - 7966 1141 ## LLKF_0604 DNA helicase 6 4 Op 3 . + CDS 7950 - 9194 672 ## BSU06780 hypothetical protein + Term 9202 - 9263 7.6 Predicted protein(s) >gi|300495848|gb|AEAT01000138.1| GENE 1 52 - 1113 1249 353 aa, chain + ## HITS:1 COG:RSc3292 KEGG:ns NR:ns ## COG: RSc3292 COG3274 # Protein_GI_number: 17548009 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 7 350 1 334 336 98 27.0 2e-20 MAHKQRVAYLDYLRLVAILGVITIHVATSINFYRQDYASLNWQILSFWDGLSRFCVPVFI MISGAVFLNPDFDLSWEKLFKKYLRRIVVSYLIWQLIYCGWYYFAKGGDLVTVAKFLIGS YDHLWYLPMIAGLYLVTPLLRPLARRRQLLEYYLSLALLFAWLLPTGLDLIRLWPNPPKH MADALAAFKRLLGKLDLQTVMGFGGYYMAGYYFSQVHMSKRNLYFVQALGLLGAGATIVL SGWLTAKASHLRLTLYSYDSFFVLLESSAVFLSLQTLKPRLWSEEVLGELAGSVMGIYLL HPLLIYYWSKTPVWQLAASNSAWLPGLVILIFASSLAIVWLLRRSRFLARWLL >gi|300495848|gb|AEAT01000138.1| GENE 2 1371 - 2636 628 421 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 5 421 8 418 418 246 37 5e-65 MANFDILEDLKWRGAINQETDEEGLRDYLAKHDDLALYCGTDPTGDSLHIGHLIPFMILK RFQLAGYKPVIVIGGGTGSIGDPSGRSTERVLQSEETIKHNEEALTAQMVKLFGTENFRI VNNRDWLGKMTLLEFLRDYGKLFQVNNMLNKEVVASRLENGISFTEFSYQILQAIDFYIL NRDHGVQMQIGGADQWGNITAGIDLIHRLEGADRPAFGLTIPLMLKADGTKFGKSAGGAV WLDPEKTSPYEFYQFWINQDDRDVIKYLKYFTFLNHEEIDALEEKVKTEPWKREAQKRLA EEVTKFVHGEEGLKEAQTVTEALFSGNVKDLTTKQVEIALAKAPSAESGAEKKNLVDFLV DTKIESSKRQAREDVNNGAIYVNGDRIQDTDFEVDPAAAFDGKFVIIRKGKKKYTLVHIK G >gi|300495848|gb|AEAT01000138.1| GENE 3 3130 - 4641 1034 503 aa, chain + ## HITS:1 COG:BS_yeeA KEGG:ns NR:ns ## COG: BS_yeeA COG1002 # Protein_GI_number: 16077744 # Func_class: V Defense mechanisms # Function: Type II restriction enzyme, methylase subunits # Organism: Bacillus subtilis # 6 495 1 486 879 575 58.0 1e-164 MGTNEMAITEYEDKIQEIIDKNDHDSFITDFLSVYEKIPRSTITKLRKGIGRVNLSKEPG EVYLKNKLYYKETDQPLMQVYVDLERKVSDLGSKPRYIFVTDFKDILAKDTKTDDSLSIK FEDLPQYFEFFLAWNGIEKVDFDKENPADVRAAERFAKLYDIITRDNPTATAHGLNLFLI RLLFCLFAEDTGMFKRDEFTNDIMAYTKADGSDLDDFIKKLFENLDVHEEQRDASLPSWV KKYPYVDGDLFIEPHESLKFTTESRTKIIDAGKKLDWTSINPDILGSMLQAVASEDKRSH LGMHYTSVPNIMKVIKPLFLDDLREEFENAKGNVDRLNELYARIGKIKFMDPACGSGNFL IITYKELRQLEIDILKELNNMGTSTMYVPSVTLDQFYGIEIEDFACDVTRLSLWIAEHQM NVKLHQEIKDAVRPTLPLKKAGDIVCGNALRLDWSKILPHEEKDEVYLFGNPPYLGSSLQ DKKQKEDMELLFKSVLSKYKNLV >gi|300495848|gb|AEAT01000138.1| GENE 4 5122 - 5970 202 282 aa, chain + ## HITS:1 COG:BS_yeeA KEGG:ns NR:ns ## COG: BS_yeeA COG1002 # Protein_GI_number: 16077744 # Func_class: V Defense mechanisms # Function: Type II restriction enzyme, methylase subunits # Organism: Bacillus subtilis # 4 276 618 875 879 257 46.0 1e-68 MVKGSQPSDGGNLILSQEDANKVKGEIPNNILRRYVGAKDYINGYSRYCLWMNDKTYKEY KNVPLIQDRVSKVYSFRQSAKSSAARKGSTTPWEFLQRGEYASAYGEDIVTNKRTIVAPR VSSESRMYIPFGIVDSSVIISDSAMAIYDAPLWLLGLLESRIHMTWLRAVGGRLKTDYRY SAGLVYNTFPVPEMSTRRKNEIENLVLNILDIREEEGGTLAELYGSPLAEKNPKPMNARL LEAHQELDRVVDRAYKPSGFKDDAERLSMLLEMYAEKVKDVK >gi|300495848|gb|AEAT01000138.1| GENE 5 5972 - 7966 1141 664 aa, chain + ## HITS:1 COG:no KEGG:LLKF_0604 NR:ns ## KEGG: LLKF_0604 # Name: not_defined # Def: DNA helicase # Organism: L.lactis_KF147 # Pathway: not_defined # 5 656 1 638 641 747 59.0 0 MLKNVSDNIVEINYHQTGKSTNTNELGMREMQAKVYAKRNSQYLLVKAPPASGKSRALMF VALDKLANQGVKKVIVAVPERSIGKSFKNTELAKYGFYEDWIVDPQYDLTLPGGDMGKVD KLVEFLKNDDPSARIAICTHATLRFAYERIENDHVFDDVMVAIDEFHHVSADDSSVLGQA LKNILRNSTAHVFAMTGSYFRGDSAPILTPDDEAMFDKVTYTYYEQLDGYRYLKSFGIDY KFYQGSYLEAIDKALDTTKKTIVHIPNVNSGESTKDKYGEVDAIFDAIGSVVGQDENTGI YTIKDKETGQLLKVADLVTEDGREKVQEYLRTMNSADDLDILIALGMAKEGFDWSFAEQA LTIGYRHSLTEVVQIIGRVTRDSSNKSHSQFTNLIEQPDAKNEDVEYAVNQILKAISASL LMEQVLAPQIHLKPRKHEHDPQPSDDDNNGGANIYVKGLAEITSDKVRNILENDMNDLQA AILQDSAVKKGIAADVAAEEMNKILIPKVIMTRYPDLTDDEVEQVRQYTVAQINLQHAET DTAVDEQGKTNDFLKMADKFVNIDDLDINLIDSINPFQRAYDVISQNINSDVLRKIQSAI DANKYKFDEQELIFLYPKIKQFVVENSRKPSKDSHDEMEVKLAYALSALKVLRAKKGAQN GQAN >gi|300495848|gb|AEAT01000138.1| GENE 6 7950 - 9194 672 414 aa, chain + ## HITS:1 COG:no KEGG:BSU06780 NR:ns ## KEGG: BSU06780 # Name: yeeC # Def: hypothetical protein # Organism: B.subtilis # Pathway: not_defined # 23 406 25 380 382 241 40.0 3e-62 MDKPIRSLEDIFADPDAATLLAPDKKPVINYDPDVEGFKEIIDWVKQHGGKEPQKKMDLT ERKMFSRLKGIRNNPDRCQKLKEYDELHLLGEADGSSEKEREAKAIKQEKMDFDSLDDIL TDDSLLFDDSQEDMELNSKLFDTAKFKQILTKKQEEEKSVRNKMDGFSKYEPMFKQIQAG ISSGQRQLVKFQNPEKNLKEHRFYILNGQLIYIEAIGDLQLRESSDSKSRKDARAHVIYE NGTENFPFIRGLASSLYGSKQRRTVPGYIVTEPMQKEYKLTNDDYVTGYVYVLKSLSQNP QILEIEKEHDLYKVGVTENTVEERTANAENEPTYLYAPIQIVEKIKVINLNAKTLEKTIH HALAEYRLDVDIKAANGKIIHPMEWFVVDLNTIETVVGKLITQLRVKQLDGMQN Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:47:40 2011 Seq name: gi|300495829|gb|AEAT01000139.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00045, whole genome shotgun sequence Length of sequence - 16075 bp Number of predicted genes - 18, with homology - 18 Number of transcription units - 6, operones - 6 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 79 - 138 4.0 1 1 Op 1 36/0.000 + CDS 301 - 822 423 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 2 1 Op 2 46/0.000 + CDS 843 - 1043 345 ## PROTEIN SUPPORTED gi|104774347|ref|YP_619327.1| 50S ribosomal protein L35 3 1 Op 3 . + CDS 1088 - 1444 591 ## PROTEIN SUPPORTED gi|104774346|ref|YP_619326.1| 50S ribosomal protein L20 + Term 1452 - 1500 10.2 + Prom 1465 - 1524 6.3 4 2 Op 1 1/1.000 + CDS 1553 - 2662 1823 ## COG1161 Predicted GTPases 5 2 Op 2 9/0.000 + CDS 2673 - 3311 874 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 6 2 Op 3 6/0.000 + CDS 3376 - 3897 825 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 7 2 Op 4 . + CDS 3939 - 4286 487 ## COG0799 Uncharacterized homolog of plant Iojap protein 8 2 Op 5 . + CDS 4290 - 5444 1439 ## COG1323 Predicted nucleotidyltransferase 9 2 Op 6 1/1.000 + CDS 5444 - 6022 930 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein + Term 6036 - 6088 5.2 + Prom 6067 - 6126 7.1 10 3 Op 1 40/0.000 + CDS 6202 - 6915 1078 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 11 3 Op 2 . + CDS 6908 - 8500 1953 ## COG0642 Signal transduction histidine kinase + Term 8510 - 8563 13.5 - Term 8505 - 8544 9.3 12 4 Op 1 2/0.500 - CDS 8589 - 9551 1534 ## COG0706 Preprotein translocase subunit YidC 13 4 Op 2 . - CDS 9585 - 9857 369 ## COG1254 Acylphosphatases - Prom 9907 - 9966 6.5 + Prom 9844 - 9903 5.0 14 5 Op 1 . + CDS 9923 - 10687 1240 ## COG0566 rRNA methylases + Prom 10689 - 10748 5.5 15 5 Op 2 1/1.000 + CDS 10769 - 11119 638 ## COG1733 Predicted transcriptional regulators + Term 11347 - 11391 8.0 16 6 Op 1 40/0.000 + CDS 11401 - 12450 1635 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit 17 6 Op 2 . + CDS 12450 - 14861 3639 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 18 6 Op 3 . + CDS 14932 - 15420 973 ## COG0782 Transcription elongation factor + Term 15424 - 15459 1.1 Predicted protein(s) >gi|300495829|gb|AEAT01000139.1| GENE 1 301 - 822 423 173 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 3 165 1 164 166 167 50 4e-41 MILNESIRAREVRLINAEGEQVGVVSRNEALRQASDAGLDLTLISPNAKPPVAKILDYGK YRFEQQKKLKESRKNSKQVSVKEIRLSPAIEGNDFETKLKHARKFLEKEGAKVRVSIRFR GRAITHKELGQQVLEKMAEETSDIAVVTSRPKMEGRQMFLMLSPKSDKDKNKQ >gi|300495829|gb|AEAT01000139.1| GENE 2 843 - 1043 345 66 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|104774347|ref|YP_619327.1| 50S ribosomal protein L35 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 66 1 66 66 137 100 5e-32 MPKMKTHRASAKRFKRTGNGGLKRHHAFTGHRFHGKTKKQRRHLRKAAMVSRSDLKRIKQ MLSQMR >gi|300495829|gb|AEAT01000139.1| GENE 3 1088 - 1444 591 118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|104774346|ref|YP_619326.1| 50S ribosomal protein L20 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] # 1 118 1 118 118 232 100 1e-60 MPRVKGGTVTRARRKKVLKLAKGYRGSKHVQFKAASTQLFVSYKYAFRDRKKRKSEFRRL WIARINAAARQNGLSYSKMMHGLKLAGVDMNRKMLADIAYNDEKTFAALAETAKKALA >gi|300495829|gb|AEAT01000139.1| GENE 4 1553 - 2662 1823 369 aa, chain + ## HITS:1 COG:SP1749 KEGG:ns NR:ns ## COG: SP1749 COG1161 # Protein_GI_number: 15901581 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 3 369 2 368 368 370 50.0 1e-102 MSEEIRCIGCGAALQSQDKQLPGYLPASALAKVENGEREEVYCQRCFRLRHYNEIMPVSL DNDDFLALLNTMAEKKALIVNVVDLFDFSNSLISSLKRFVGTNDFILVGNKLDLFPKNSK ESKIKDWMRQEANRMGLYPKDIFLISAAKKKNLDTLIDYLNKHSQDQDVYFVGTTNVGKS TLINAIIDEMGDVQDLITTSRFPGTTLDQIEIPLDNGHFLVDTPGILTDKQLASRLDPKD LDLASPKKPLKPATYQLLPGNTIFLAGLGRIDYLKGPSTSFTIYAARGMYIHRTKTEKAD EFYQKHVGELLSPPGPNSDLPPLKGQEYSIKYRSDVLFAGVGFITVPEGCVIKAYTPGGI GLGTRRALI >gi|300495829|gb|AEAT01000139.1| GENE 5 2673 - 3311 874 212 aa, chain + ## HITS:1 COG:SPy0308 KEGG:ns NR:ns ## COG: SPy0308 COG1057 # Protein_GI_number: 15674475 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Streptococcus pyogenes M1 GAS # 25 211 24 210 210 169 44.0 5e-42 MDSLVDFSKETQVKVQTAESQRKGKQIGIMGGTFNPVHMAHLVAAEQAMTKLHLDEVWFI LDNIPPHKDAPLNVSARDRATMLDLATRDNPRFRVKLLELFRGGVSYTIDTMRYLTKKAP ENTYYLIMGSDQVNSFHKWKNAEELAKLATLVGIRRPGYPQDPQYSMIWVDAPDIRLSST AIRRAVSTGTSIRYLVPDKVREYIEEKGLYRD >gi|300495829|gb|AEAT01000139.1| GENE 6 3376 - 3897 825 173 aa, chain + ## HITS:1 COG:SPy0309 KEGG:ns NR:ns ## COG: SPy0309 COG1713 # Protein_GI_number: 15674476 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Streptococcus pyogenes M1 GAS # 2 172 22 192 197 157 43.0 8e-39 MMNEKRFAHCVRVSETARTLAKLNGYDEDKAALAGFVHDYAKQIPVEEYIKVIKEEGFDP DLLNWNRAIWHGIVGSWFIKRDLGITDPEILTAVYRHTTGDVEMTTLDQIVFVADYIEPG RTFAGVEEARKTSYADLASGVGYELAHTLAFLVQKRSKIYPRTLAAYNVWAAE >gi|300495829|gb|AEAT01000139.1| GENE 7 3939 - 4286 487 115 aa, chain + ## HITS:1 COG:BH1328 KEGG:ns NR:ns ## COG: BH1328 COG0799 # Protein_GI_number: 15613891 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Bacillus halodurans # 1 113 1 113 117 102 43.0 1e-22 MKSEELLDLVLNAISERHGEDTEAYDMRGISILADYFVATSATSSRQLHAIANSIIEACH EANFYDYRVEGNHDSEWLLVDLGDVVVNIFSEDARAFYNLEKLWADGKRVEIEED >gi|300495829|gb|AEAT01000139.1| GENE 8 4290 - 5444 1439 384 aa, chain + ## HITS:1 COG:BH2585 KEGG:ns NR:ns ## COG: BH2585 COG1323 # Protein_GI_number: 15615148 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Bacillus halodurans # 1 345 1 363 416 214 34.0 3e-55 MSVVGIVAEYNPFHSGHEFLMNQARLIAGDDPIIAVMSGNYVQRGEMAILDKWSRARSAI EAGADLVFELPFSYAVQAADMFATGGVDLLTRLGAKSLVFGVEDANLNFEYFGDRISKIP RQRQEFADYSQTYSTQYNQMVAREVGHEVSEPNAILGLAYAVANANLGSPLKLSPVNRVG AGHDDILQREAAVQSASAIRNLLLNGAERSELEQWLPKGEIAAFDQEKVLPNWELLFPFL KYRLESASIKELQQIYQMSEGLEYKFKAEIHLAENFADFLRRVKSKRYTYSRLRRLSLYT LLNVTEADVLNSYDHVSTMLLAYSKRGRKYLKQQRKDFEIDIVSKVDRKNAQEGTLGLQV RVDRLFEQIVGADQNFGRRPLEVN >gi|300495829|gb|AEAT01000139.1| GENE 9 5444 - 6022 930 192 aa, chain + ## HITS:1 COG:SPy0334 KEGG:ns NR:ns ## COG: SPy0334 COG1399 # Protein_GI_number: 15674493 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Streptococcus pyogenes M1 GAS # 37 177 34 178 178 73 32.0 2e-13 MLELSIFQIKNSREPLTQISADLTFADGFYQRAKDLVYEVKSAHVEGQLFYDEPFVTGNF QVEADLLVPSSRSLEAVPLKQKFSFVENYSDHEPTQEEKELGLMIIPLDDDRIDVQTAVE DNMLLNIPSTVLTKEEAEEDLYPEGQGWEVMSEQDFAGQKKDQVNPAFAQLQGLLDKMQA EEDKDKAEDEEK >gi|300495829|gb|AEAT01000139.1| GENE 10 6202 - 6915 1078 237 aa, chain + ## HITS:1 COG:L0131 KEGG:ns NR:ns ## COG: L0131 COG0745 # Protein_GI_number: 15673576 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Lactococcus lactis # 3 234 5 230 230 263 60.0 2e-70 MPKILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNG LEIARRVRQSKATPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVK IEKDASKDKLPRQKVVKFKDLTIETANRIVHRGDGKTVDLTKREYNLLMTLIENKNNVVG RDQLLNKIWGPESNIETNVVEVYVRYLRNKIDIPGQPSYIKTVRGTGYMVRDEEDNA >gi|300495829|gb|AEAT01000139.1| GENE 11 6908 - 8500 1953 530 aa, chain + ## HITS:1 COG:lin1415 KEGG:ns NR:ns ## COG: lin1415 COG0642 # Protein_GI_number: 16800483 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 17 502 12 478 483 274 34.0 2e-73 MLKQNAASGKKGTRHVSLIVRWVSIVAMTIMVSFLVFSAVVYNTVKQEALSQQKDTSNEV VNVLRKRLIDIDDELEITNVVQQLSPNTRRILTGGPALSENNNSNSSVFGDSVLSTVTNP DMTVAIYNLRNEIVFHNGDSAPKLVKFTSESKSVVKEGRDGQSSLYVYRKVRNRKSHKLT GYIVVKNQMTGYNRLISRTLKAMLWLSILGISLAIVISYLVVHSVVRPINKMSKVAREVN ADPNSTARIPELHRNDELEELALSFNMMLDRMQKYIEQQKQFVSDVSHELRTPVAVIEGH LSMLKRWGKDDPQVLEESIDASISEAERMKHLIQEMLDLTRAEQISVHYPNAIAEPMEVL TRVVGDMGMVHPDFKISLEVEDLDPDTKIQIFQGHLEQILIILIDNGIKYSTDRKEIAVA AGQSGQEMQIVVQDYGEGISDEDKKKIFNRFYRVDKARTREKGGNGLGLSIAQKLVESYH GTIDVESVLGQGSQFRITFPVLTDEEVKELESREEQKQAGTESPKQDPTI >gi|300495829|gb|AEAT01000139.1| GENE 12 8589 - 9551 1534 320 aa, chain - ## HITS:1 COG:L164312 KEGG:ns NR:ns ## COG: L164312 COG0706 # Protein_GI_number: 15672551 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Lactococcus lactis # 19 320 6 307 307 161 35.0 1e-39 MKKIKKRLLPVSLLALLPLFLTACASQTSKNGSLKAPTSGPYYWIYEWIGLPLQHITVNI AHAIGGASGAGWAIVIITLGVRVILMPLMLSQQHKATLQQEKMHLLQPQMQLLQKAMKTP GMTPDQQMALTGLQREIYSKNNVSMTGGMGCLPLLIQMPIMIGIYQAVAYSNALAKSTFF GISLSSKSMVLAIIATVFALIQSYVAMIGIPEEQKKTMQATMLMNPIMTFFFSMSFSGAL ALYWAVGNLVMVIQQLITTFIVQPRAKKRVSKELADSPIVEVVTQAKLDQILKPAPEQKP TSQPKSGDLRKRNQGKQKRK >gi|300495829|gb|AEAT01000139.1| GENE 13 9585 - 9857 369 90 aa, chain - ## HITS:1 COG:BS_yflL KEGG:ns NR:ns ## COG: BS_yflL COG1254 # Protein_GI_number: 16077831 # Func_class: C Energy production and conversion # Function: Acylphosphatases # Organism: Bacillus subtilis # 1 90 1 90 91 66 35.0 1e-11 MQTWELLAHGVVQGVGFRWSVQMLAQKMKLPGSVRNNPDGTVTIVIQGTPTDLVKFKAEL PNAAPYAQISRLDTKVLPEMEQMHSFHVLY >gi|300495829|gb|AEAT01000139.1| GENE 14 9923 - 10687 1240 254 aa, chain + ## HITS:1 COG:lin1181 KEGG:ns NR:ns ## COG: lin1181 COG0566 # Protein_GI_number: 16800250 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Listeria innocua # 1 251 1 248 252 203 44.0 2e-52 MQERTSVNNPQIKAIGKLQQKKYREESGYYLIEGFHLVEEALKASVKYREILATEAALSR LAQLGLAYDESKLIKISQSVASHLSSTKNSQDIFMTVKINQSEHFAFSYGKWVLLDDLAD PGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIKADLPDAIASLKA ADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIAALADEKLYIPIKGRAESL NAAVAAGIMIYHFS >gi|300495829|gb|AEAT01000139.1| GENE 15 10769 - 11119 638 116 aa, chain + ## HITS:1 COG:CAC0849 KEGG:ns NR:ns ## COG: CAC0849 COG1733 # Protein_GI_number: 15894136 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 16 115 2 101 102 82 44.0 2e-16 MTELAEQDVPCCKNAENYEMCARFVKAFEIIGKKWNGLIISSLCDTKAMRFRDLAHAVGA CSDRVLVERLRELEVDGIVKRSKDAEKKIVLYTLTPKGAELKPVFNQVHIWADKWA >gi|300495829|gb|AEAT01000139.1| GENE 16 11401 - 12450 1635 349 aa, chain + ## HITS:1 COG:lin1184 KEGG:ns NR:ns ## COG: lin1184 COG0016 # Protein_GI_number: 16800253 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Listeria innocua # 3 348 1 346 350 444 58.0 1e-124 MDLFDRLKDLREQGLAEIKEAESEKSLNDVRVKLVGKKGELTQILHQMKDVAPEKRREVG QKVNELRDLFNENLASAKDNLIEKAIEARLEAEKIDVTLPGRRKHVGSKHPIRIIQDDLE RFFIGMGYQVVQGPEIESEHYNFEMLNLPKDHPARDMQATFYVDADHLLRSQTSPVQART MEKHDFDKGDLKMISPGKVYRRDDDDATHSHQFMQMEGLVVGKNISLSDLKGTLELVAKH EFGQDRETRLRPSYFPFTEPSVEMDVSCFECGGKGCAICKNTGWIEVLGAGIVHPNVLSA AGIDPSVYSGFAFGLGLDRFAILKYGIDDIRDFYSDDVRFLQQFRQEED >gi|300495829|gb|AEAT01000139.1| GENE 17 12450 - 14861 3639 803 aa, chain + ## HITS:1 COG:SP0581_2 KEGG:ns NR:ns ## COG: SP0581_2 COG0072 # Protein_GI_number: 15900491 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 150 803 2 655 655 481 41.0 1e-135 MLVSYNWLKDFLNMDGVDPYALAEKLTRSGVEIASTVHPEDGLSKLVVGHILTCEKIEGT HLNKTTVDVGEDEARQIVCGAPNVAAGQDVIVALPGSHLPGGIKIKKGKLRGIESNGMIC GLQELGFSDSVVPPKYADGIWVFHDPDLKPGDSVFAALGMDDYVLDFDITPNRADTSSME GAAYEVGALIDQKPKIEDVVLKEDGADWTGDFTAVADEKIAPKYYLRKLTGVKIAESPLW LQARLWNAGIRPINNVVDATNYVMLLTGQPMHAYDAKLFDKTKKIEVRLAKEGEKLQLLN EKEIDLDPQDIVITDGEQAVGLAGVMGGLNSEVTEETTDVILEAAVFDPALTRKAALRHD NRTDASALFEKGINWDNTQKALDICALILRANAGATVLAGEIKASDLDKEAVVITTTASR TNKILGTDLSMDEIVKILGKLNFPVAVNGDEYTVTVPNRRWDIFIDSDIFEEIGRIYGYD NIKSTHPATGELTGGYAADEVKVRHLRQLLEGQGLSETINYSLTSEELATTFVKKALAPV KVNWPLNSARTTMRQNLICGLLDTVAYNFARKQTELQLFENGRVYDMEGGDYHEHEHLAA AYVGLAGESNWQHKDEVVDFYYVKGQLEDVFEMIGVKDVEYRAEAIKGMHPTRTAGIYVN DEYIGLIGQISPVLTMTDKNFAGKEIYVYELNLDALLPLMAKGVKSKPAPKYPAVQRDLS ILVDEDVTNAQVESCIKENAGKYLVSVEVIDVYQGAHLAAGKKSLAYRLTFLNEAETLTD VVVTKAIDNVQAALEEKLEANIR >gi|300495829|gb|AEAT01000139.1| GENE 18 14932 - 15420 973 162 aa, chain + ## HITS:1 COG:lin1531 KEGG:ns NR:ns ## COG: lin1531 COG0782 # Protein_GI_number: 16800599 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Listeria innocua # 3 153 4 154 160 140 53.0 1e-33 MPEKIYEMTAEGKKQLEEELQNLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRL EERIDAVSEQLKYAVIVDTDAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGK ISNESPIGKALLGHKKGETVKINVDSANVSYDVVINDVKTTD Prediction of potential genes in microbial genomes Time: Tue Jul 12 15:47:41 2011 Seq name: gi|300495827|gb|AEAT01000140.1| Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00249, whole genome shotgun sequence Length of sequence - 658 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 249 - 308 4.2 1 1 Tu 1 . + CDS 333 - 657 242 ## COG2452 Predicted site-specific integrase-resolvase Predicted protein(s) >gi|300495827|gb|AEAT01000140.1| GENE 1 333 - 657 242 108 aa, chain + ## HITS:1 COG:MJ0014 KEGG:ns NR:ns ## COG: MJ0014 COG2452 # Protein_GI_number: 15668185 # Func_class: L Replication, recombination and repair # Function: Predicted site-specific integrase-resolvase # Organism: Methanococcus jannaschii # 1 108 4 107 213 67 35.0 5e-12 MSEYMSISKAAEYLNVAKSTLRNWEAEGLITPLRTASNQRRYTKEMLDEVLQGNVKASKP KKLLTIGYCRVSSGYQKEDLQRQKDVVSRYCEVNGYQFKIIQDVGSGL